BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781101|ref|YP_003065514.1|
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter
asiaticus str. psy62]
         (472 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/472 (100%), Positives = 472/472 (100%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA
Sbjct: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT
Sbjct: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH
Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH
Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL
Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL
Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR
Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ
Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472


>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/472 (75%), Positives = 408/472 (86%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWTFHDLL AIQG ++G VP+ FV GISIDSRSIAP+EAFFAIKG HYDGHDF+LHA
Sbjct: 1   MSNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQK A LVV+N +M+ASIG LS+PVF V+DVL ALNKLA AARLRS+A IIAITGSVGKT
Sbjct: 61  VQKSACLVVINAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML +ALSS  K +  I SYNNHIGVPLTLA+MP D +FGIFELGMSHLGEIRFLTH
Sbjct: 121 TAKEMLKLALSSAGKIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEIRFLTH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPHIA+ITTIAPAHL NFSGIEEIASAK+EIFEGLEKTGT+ LN DDSFFE LK KSH
Sbjct: 181 LVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFLKEKSH 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LGI  +Y+FG+S +ADF+L   +QCSE+S M VQLQGKS EVVHH +G HMAQN+L TL
Sbjct: 241 LLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAVGRHMAQNILATL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIVS+L A ++ AI+ +S+F+P++GRGKRYRCAL +GFFTLIDESYNANP SM+AAISVL
Sbjct: 301 GIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTSMRAAISVL 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQISPHG+GRRIAVLGDM EMGE ++SFHIDLAE+L  YNISHVWLSG HVLALK+ALP+
Sbjct: 361 SQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVLALKNALPK 420

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +HVHY E +D   LFIQSSL+DGDV+V+KSS+SCGF+ L+ LLLEEF  IQ
Sbjct: 421 DMHVHYRERIDDFLLFIQSSLIDGDVIVIKSSHSCGFHSLVELLLEEFTLIQ 472


>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/469 (52%), Positives = 330/469 (70%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSIAP EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVE 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RPH+A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD++ AI AL+   P++GRGKR+R ++  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P   GRRIAVLGDM EMGE +Q  H DL   L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP
Sbjct: 420 SVHVEYRENTGELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468


>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 477

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++  + G   G +P+G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L++V+   + ++G L++P+  V+DVL AL +L +A+R RS+A IIA+TGSVGKT
Sbjct: 60  MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD+  AI+AL+   P++GRGKR+R  +  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P G GRRIAVLGDM EMGE +Q  H DLA  L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468


>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRS  P  AFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GE+R L  
Sbjct: 120 TTKEMLRHVLAPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEVRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD+  AI+AL+   P++GRGKR+R ++  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P G GRRIAVLGDM EMG+ +Q  H DLA  L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468


>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
 gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
          Length = 486

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/475 (50%), Positives = 327/475 (68%), Gaps = 6/475 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ AI G S G +P+G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAIVGRSFGAMPEG-ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA ++V++   + ++G L++P   VDDVL AL +L VAAR R++A IIA+TGSVGKT
Sbjct: 60  MANGAAMIVISEARLPAMGRLTVPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H  EIR L  
Sbjct: 120 TTKEMLRRTLSPSGKVHASVASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V PH+A+ITTIAPAHL NF  I EIA+AKAEIF+G+   G + LN D+  FE L+  + 
Sbjct: 180 MVEPHVAIITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAAL 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ ++SFG+   AD +L ++    E S + + + G++MEV     G H+A+N L  L
Sbjct: 240 AAGVEHVHSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V ++ AD+D AI AL+    ++GRG+R++  +  G+FTLIDESYNANPASM+AAI++L
Sbjct: 300 GTVMLVDADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGE-----GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +  SP        GRRIAVLGDM EMG+ +Q  H +LA  L    I +VWL+G  + AL+
Sbjct: 360 ATSSPDANVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGPEMAALR 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           DALP S++V Y E  + L  F+ +S+  GDV++VKSS   GF +++  LL++FPA
Sbjct: 420 DALPESVYVEYRENTEELAEFVLNSVAPGDVLMVKSSLGTGFGKIVTALLDKFPA 474


>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 479

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/472 (51%), Positives = 330/472 (69%), Gaps = 3/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSIA  EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGALPEG-ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L  A+R RS+A IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAIS 358
           G+V I+ AD++ AI AL+   P++GRGKR+R ++    G FTLIDESYNANPASM+AAI+
Sbjct: 300 GVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIA 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+   P G GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++L
Sbjct: 360 LLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           P S+HV Y E    L  ++ +++  GDV++VKSS   GF +++  LL++FPA
Sbjct: 420 PESVHVEYREKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 471


>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652]
 gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 470

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/463 (51%), Positives = 323/463 (69%), Gaps = 3/463 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A+ G   G +P+G + GISIDSRSI   EAFFAIKG   DGHD+   A+  GA L+V
Sbjct: 1   MIAAMAGRPFGALPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+   + ++G L++P+  V+DVL AL +L  A+R RS+A IIA+TGSVGKTTTKEML   
Sbjct: 60  VSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHV 119

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  ++RP +AVI
Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + +LG++ I+S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  LG+V I+ AD
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           ++ AI AL+   P++GRGKR+R ++    G FTLIDESYNANPASM+AAI++L+   P G
Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           E    L  ++ +++  GDV++VKSS   GF +++  LL++FPA
Sbjct: 420 EKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 462


>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
 gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
          Length = 470

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/461 (51%), Positives = 321/461 (69%), Gaps = 3/461 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A+ G   G +P+G + GISIDSRSI   EAFFAIKG   DGHD+   A+  GA L+V
Sbjct: 1   MIAAMAGRPFGTLPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+   + ++G L++P+  VDDVL AL +L  A+R RS A IIA+TGSVGKTTTKEML   
Sbjct: 60  VSEARLPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHV 119

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  ++RP++AVI
Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + +LG++ I+S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  LG+V I+ AD
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           ++ AI AL+   P++GRGKR+R ++    G FTLIDESYNANPASM+AAI++L+   P G
Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           E    L  ++ +S+  GDV++VKSS   GF +++  LL++F
Sbjct: 420 EKTSELTEYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKF 460


>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
 gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
          Length = 477

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/470 (50%), Positives = 315/470 (67%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  D++    G  +G +P G + GISIDSR++   EAFFAIKG   DGHD+   A
Sbjct: 1   MNWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAGL+VV    + ++G L++P+  V+DVL AL KLA+AAR R+ A IIA+TGSVGKT
Sbjct: 60  VANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+   + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIAPAHL NF  IEEIASAKAEIFEGLE  G + LN D++ FE L+  + 
Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQLEEAAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ I +FG+   ADF+L  ++  S  S +   L G++ E+  +  G H+A N +  L
Sbjct: 240 DQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V++  A++D A + L      +GRG+R+R  +  G F LIDESYNANPASM+AAI+VL
Sbjct: 300 GAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++    G GRR+AVLGDM EMGE S   H +LA  L    I HVWL+G  + AL+DALP 
Sbjct: 360 AETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGEAMAALRDALPD 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+ V +  T   L  F    +  GD ++VKSS   GF +++  LL+++PA
Sbjct: 420 SVTVIWFPTTAELADFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469


>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
 gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
          Length = 477

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/472 (51%), Positives = 318/472 (67%), Gaps = 1/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  DL+ A+ G  +G +P G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MTLLWTIEDLVAAMTGRPVGTMPPG-ITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA L+VVN   + ++G L++P+  VDDVL AL +LA+AAR RS+A I+A+TGSVGKT
Sbjct: 60  VANGAALMVVNEAKLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   + +A + S+NNH GVPLTLARMP    +G+FE+GM+H GEI  L  
Sbjct: 120 TTKEMLRQVLAPSGEVHAAVASFNNHWGVPLTLARMPATAQYGVFEIGMNHSGEITPLVQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITTIAPAHL NF+ ++EIA AKAEIF G+   G + LN+D+ +FE L+ K+ 
Sbjct: 180 MVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLNHDNPYFEYLEHKAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI  I+SFG+   A+F+L ++   +E S     + G++ EVV    G H+A+N +  L
Sbjct: 240 EAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRHIAENAMAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +L AD+D A+ ALS   P +GRG+R+R     G FTLIDESYNANPASM+AAI+VL
Sbjct: 300 GAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P GEG RIAVLGDM EMGE S+  H DLA  L    I HVWL+G  + AL+  LP 
Sbjct: 360 AAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAGPLLAAGIEHVWLAGPAMAALRAQLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           ++ V    T + L  F  +S+  GDVV+VKSS   GF +++  LL+ +P + 
Sbjct: 420 TVSVASFNTAEDLAAFAVASVHGGDVVMVKSSLGIGFGKIVAALLDNYPPLD 471


>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
 gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
          Length = 477

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/470 (49%), Positives = 318/470 (67%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++    G  +G +P G + GISIDSR++   EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA L+VV    + ++G L++P+  V+DVL AL KLA+AAR R+ A IIA+TGSVGKT
Sbjct: 60  VANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+   + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIAPAHL NF  IEEIA+AKAEIFEG+E+ G++ LN D++ FE L+  + 
Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ I +FG+   ADF+L  ++  +  S +   L G++ E+  +  G H+A N +  L
Sbjct: 240 EAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V++  A++D A++AL      +GRG+R+   +N G F LIDESYNANPASM+AAI+VL
Sbjct: 300 GAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++    G GRR+AVLGDM EMGE S   H +LA  L    I HVWL+G  + AL+DALP 
Sbjct: 360 AETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPD 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+ V +  T   L  F    +  GD ++VKSS   GF +++  LL+++PA
Sbjct: 420 SVTVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469


>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/471 (47%), Positives = 311/471 (66%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT +D+++A++G   G +P G + GISIDSRS+ P EAFFAIKG  +DGHDF+  A+  
Sbjct: 5   LWTSNDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAMAA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKTTTK
Sbjct: 64  GAGLLVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H  EIR L  +VR
Sbjct: 124 EALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLVKMVR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F+ L+  +   G
Sbjct: 184 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELAEKAG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  +D++LR+ K     S M V++ G     V  G+ G H+ QNML  LG 
Sbjct: 244 VEHIATFGENARSDYRLREVKLHPTCSCMTVKI-GTHEAAVKVGMPGRHIVQNMLAVLGA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 303 ADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHS 362

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  + ALK+ALP  
Sbjct: 363 TTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNALPVE 422

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDV++VKSS   GF +++  L+ +FP ++
Sbjct: 423 IQTEYRQSTDELLPLVIKAVRPGDVIMVKSSKGIGFSKIVKTLISQFPPVE 473


>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
          Length = 476

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/471 (47%), Positives = 309/471 (65%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   D+++A++G   G +P G + GISIDSRS+ P EAFFAIKG  +DGHDF+  A+  
Sbjct: 5   LWKSDDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMAA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKTTTK
Sbjct: 64  GAGLIVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H  EIR L  +VR
Sbjct: 124 EALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLVKMVR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F+ L+  +   G
Sbjct: 184 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELAEKAG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  +D++LR+ K     S M V+  G     V  G+ G H+ QNML  LG 
Sbjct: 244 VEHIVTFGENARSDYRLREVKLHPTCSCMTVK-AGTHEAAVKVGMPGRHIVQNMLAVLGA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 303 ADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHS 362

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  + ALK+ALP  
Sbjct: 363 TAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNALFIGGPDMSALKNALPVE 422

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           IH  Y ++ D L   +  ++  GDV++VKSS   GF +++  L+ +FP ++
Sbjct: 423 IHTEYRQSTDELLPLVVKTVRPGDVIMVKSSKGIGFSKIVKALISQFPPVE 473


>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis B2/94]
 gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M644/93/1]
 gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M13/05/1]
 gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M490/95/1]
 gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti B1/94]
 gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           sp. F5/99]
 gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
 gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
          Length = 481

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/471 (48%), Positives = 307/471 (65%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHLS+F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
 gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
          Length = 481

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/471 (47%), Positives = 305/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            AGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  DAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. 83/13]
 gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
 gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
          Length = 481

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHIVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella neotomae 5K33]
 gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
          Length = 481

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
 gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
          Length = 481

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
           Abortus 2308]
 gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis bv. 5 str. 513]
 gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 9 str. C68]
 gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
           Cpn60:Cytoplasmic peptidoglycan synthetases,
           C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
           2308]
 gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis M5-90]
          Length = 481

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
 gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
          Length = 481

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHL 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
 gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
          Length = 481

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  G+ G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGMPGRHIVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis bv. 3 str. 686]
 gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
 gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
          Length = 481

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/471 (47%), Positives = 305/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
 gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
          Length = 481

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL  F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHIVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP S++AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  +   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I + Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQIEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
 gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
          Length = 481

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/471 (47%), Positives = 305/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +F ++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFDENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
 gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
          Length = 477

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+IA  EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTCSDLLAAMNGRPVGNLPEGII-GISIDSRTIAKGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A +IA+TGSVGKT
Sbjct: 60  LANGASLLVVSEGKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A I S+NNH GVPLTLARMP   +FGIFE+GM+H GEIR LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEIRPLTA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ K G   +N D   FELL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELLERAAV 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  I+SFG +  ++++L ++   +E S +   + G++ EV     G H+A+N L  +
Sbjct: 240 AAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGAPGRHIAENALAVV 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +  AD+D  + +L+   P++GRG R+R  +  G  TLIDESYNANPASM+AAIS+L
Sbjct: 300 AAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIA+LGDM EMGE + + H  LAE +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGITDVWLAGPDIAHLRDALPG 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + E +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHREAVGDLTSYALGAVAAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
 gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
          Length = 477

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/469 (46%), Positives = 308/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLGAMNGRPVGNLPEG-ITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   D+G+FE+GM+H GEIR LT 
Sbjct: 120 TTKEMLRHMLSPLGRVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEIRPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ +++IA+AKAEIFEG+   G   +N D + +ELL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELLEKAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  ++ FG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 TAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    +L+   P++GRG R+R  +  G+ TLIDESYNANPASM+AAI++L
Sbjct: 300 AAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNANPASMRAAITLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIA+LGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTGTEMAHLRDALPS 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS S G  +++  LL+  P
Sbjct: 420 EVSVVHRDLVSDLTAYALGAVAAGDVVMVKSSKSTGCAKIVQALLDAHP 468


>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
 gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
          Length = 481

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/471 (47%), Positives = 304/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +V 
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVC 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
 gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
          Length = 481

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/471 (47%), Positives = 304/471 (64%), Gaps = 4/471 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+  
Sbjct: 10  LWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK
Sbjct: 69  GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +VR
Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +   G
Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++ I +FG++  AD++LR  K     S M V++ G     V  GI G H+ QNML  LG 
Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367

Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP  
Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           I   Y ++ D L   +  ++  G VV+VKSSN  GF +++  L+ +FP ++
Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGYVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
 gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
          Length = 477

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/469 (46%), Positives = 307/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   DFG+FE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+   G   +N D + ++LL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  ++SFG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    + +   P++GRG R+R  +  G  T+IDESYNANPASM+AAIS+L
Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIAVLGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Sinorhizobium meliloti 1021]
 gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
 gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti 1021]
 gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
          Length = 477

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/469 (46%), Positives = 306/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L   AR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   DFG+FE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+   G   +N D + ++LL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  ++SFG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    + +   P++GRG R+R  +  G  T+IDESYNANPASM+AAIS+L
Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIAVLGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
          Length = 477

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT   L+ A+ G  +G +P+G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MNLLWTSEALVTAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VAAR RS+A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   LS++ K +A   S+NNH GVPLTLARMPVD D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPVDCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEG+E  G   LN DD+ F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDGAAILNRDDARFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  M       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +++AD+D  + AL+    + GRGKR+      G  TLIDESYNANPASM AA+++L
Sbjct: 300 GAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + AL +ALP 
Sbjct: 360 NTTPVAGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMKALAEALPA 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            I   Y      L   + ++L  GDVV++KSS   GF +L++ LL +FPA
Sbjct: 420 EIQTEYRAGAAELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 469


>gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           schoenbuchensis R1]
          Length = 473

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/472 (46%), Positives = 298/472 (63%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL  + G S+G +P+ F +GISIDSRS+   + FF IKG   DGHDF   A
Sbjct: 1   MTVLWDKQTLLSVMNGLSVGCLPETF-SGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGAG++VV  + +A +  L+ P+  V DVL AL KLA AAR RSKA IIA+TGSVGKT
Sbjct: 60  YAKGAGVLVVAQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ + YA +GS+NN  GVPLTLARMP D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALGTVGRVYANLGSFNNCWGVPLTLARMPADSDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A+IT IA  H+  F  +EEIA AKAEIFEGL+  G   LN D  FF  L  K+ 
Sbjct: 180 LVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEGLDDEGVALLNADSHFFSRLVQKAE 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S+ A++Q ++    ++ S M +    + + V     G H+ QN+L  L
Sbjct: 240 QCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIGAPGRHIVQNILGVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
            +  ++ AD+     AL+ F   +GRG RYR +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GR+IA+LGDM E+G  S+  H DL + + +   + V+L G  +  L D L 
Sbjct: 360 LAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVFLVGKAMKFLADELS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             I V+YSE ++ L   I   + +GD++++KSS+S G  R++  LL+ +  I
Sbjct: 420 TYIKVYYSEYIEELLPLILQEISEGDLIMIKSSHSVGLSRIVVALLDRYKKI 471


>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
          Length = 477

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/472 (46%), Positives = 301/472 (63%), Gaps = 3/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  ++ +A+ G  +G +P G V GISIDSR++   +AFFAIKG  +DGHDF   A
Sbjct: 1   MSLLWTVQEMTEAMDGRPLGNLPDG-VTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV    + ++G L+ P+  V+DVL AL  L  AAR RS+A IIAITGSVGKT
Sbjct: 60  IATGAALLVVAEAKLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           ++KEML  AL    + +A   S+NNH GVPLTLARMP    +G+FE+GM+H  EIR L  
Sbjct: 120 SSKEMLRRALEPSGEVHASAASFNNHWGVPLTLARMPASAQYGVFEVGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIA AHL NF  + EIA+AKAEI EG+ K G + LN D+  F  LK ++ 
Sbjct: 180 MVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVLLNRDNEKFSWLKKRAS 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
            L    + +FG+   AD++L   K  ++ S +  ++ GK   VV  G  G H+ QN L  
Sbjct: 240 ELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARI-GKDDVVVKIGAPGRHLVQNALAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG V +  AD+  A  AL+    ++GRG R+  +++ G F LIDESYNANPASM+AA+ +
Sbjct: 299 LGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNANPASMRAALEL 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        GRRIAVLGDM EMG+ ++  H +LAE +   +   V LSG  + AL+D L 
Sbjct: 359 LRDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCLSGSEMKALRDELG 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +   Y +T D L   +++ L DGDVV+VKSS   GF R++  LL+++P +
Sbjct: 419 NEVETVYRDTADDLADHLKNVLRDGDVVMVKSSLGIGFGRIVKALLDKYPVL 470


>gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
 gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
          Length = 472

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/473 (46%), Positives = 303/473 (64%), Gaps = 4/473 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW   +L+ AI G  IG +P+ F +G+SIDSR++A  + FF IKG H DGHDF L A
Sbjct: 1   MTALWNKQELITAIDGVVIGNIPETF-HGVSIDSRALAEGDIFFCIKGHHLDGHDFALQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG+++V    +  +  +S P+  V DVL AL KL  AAR RS+A IIAITGSVGKT
Sbjct: 60  YARGAGVLIVAEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L++    +A + S NN  GVPLTLARMPV+ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQVLATAGNVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT I   H+  F  +EEIA AKAEIFEGL++ G   LN D +FF  L  K+ 
Sbjct: 180 LVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEGLDEEGIAILNADSAFFSYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+++NAD+Q R  +  +  S M V++ G+  EV     G H+ QN L  +
Sbjct: 240 QCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                +  D+D+ + +LS F P++GRG RYR +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359

Query: 360 LSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           L+   P GE GRRIAVLGDM E+GE S+  H DL + + L   + V+L G  + +L   L
Sbjct: 360 LAT-GPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDL 418

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              + VHY+E ++ +   + + +  GD++++KSSNS     ++  LL+ + A+
Sbjct: 419 SADVKVHYAENIEKILPLLLTEISPGDLLMIKSSNSLCSSNIVTALLDRYKAV 471


>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
 gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
          Length = 473

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/473 (45%), Positives = 307/473 (64%), Gaps = 4/473 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G++IG +P+ F +GISIDSR++   + FF IKG H DGHDF + A
Sbjct: 1   MKALWDKQALITAIDGYAIGEIPETF-SGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA +++V  + +A +  +S P+  V DVL AL KLA AAR RSKA IIA+TGSVGKT
Sbjct: 60  YERGAAVLIVAENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE+L   L+++ K +A   S NNH GVPLTLARMPV+ ++G+FE+GM+H  EIR L  
Sbjct: 120 TTKEVLKQVLATVGKVHANSASLNNHWGVPLTLARMPVESNYGVFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT I+ AH+  F  +EEIA AKAEIFEGL++ G   LN DD FF  L  K+ 
Sbjct: 180 LVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADDDFFPYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K I SFG++KN+D+Q +  +  ++ S M V + G+   +     G H+ QN L  +
Sbjct: 240 QCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                +  D++  + +LS F P++GRG RYR +L + G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           L+ I P G EGRRIA+LGDM E+G  S+  H DL + + L   + V+L G  +  L   L
Sbjct: 360 LA-IGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFLFGEAMKFLATDL 418

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              + VHY+E ++ +   I + + +GD++++KSS+S     +++ LL+ +  +
Sbjct: 419 AAYVKVHYAENIEKILPLILAEISNGDLLMIKSSHSLYSSDIVSALLDRYKVV 471


>gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
 gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
          Length = 473

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/472 (45%), Positives = 298/472 (63%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G  +G +P+ F +G+SIDSR++A  + FF IKG H DGHDF   A
Sbjct: 1   MTALWDKKALVAAINGVVMGSMPETF-SGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GAG+++V    +  +  +S P+  V DVL AL KLA AAR RS+A IIAITGSVGKT
Sbjct: 60  YERGAGVLIVAEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL+     +A + S NN  GVPLTLARMP++ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALAMTGNVHANLASLNNCWGVPLTLARMPIESDYGIFEIGMNHRDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT I   H+  F  +EEIA AKAEIFEGL++ G   LN D  FF  L  K+ 
Sbjct: 180 LVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEGLDEKGIAILNADSDFFSYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+SKNAD+Q R  +  +++S M V+++ +  EV     G H+ QN L  +
Sbjct: 240 KCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                +  +++  + +   F  ++GRG RYR +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      EGRRIA+LGDM E+GE S+  H DL + + L   + V+L G  + +L   L 
Sbjct: 360 LATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   + + +  GD+++VKSSNS     ++  LL+ + A+
Sbjct: 420 AGVKVHYAENIEKILSLLLAEISSGDLLMVKSSNSLCSSNIVTALLDRYKAV 471


>gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mesorhizobium loti MAFF303099]
 gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium
           loti MAFF303099]
          Length = 477

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/470 (47%), Positives = 306/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   L+ A+ G  +G +P+G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MSLLWTSDALVAAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VAAR RS+A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   LS++ K +A   S+NNH GVPLTLARMP + D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPDNCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEGLE  G   LN DD  F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDGRFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  M       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   ++ AD++    AL+    + GRGKR+      G  TLIDESYNANPASM AA+++L
Sbjct: 300 GAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + AL +ALP 
Sbjct: 360 NATPVTGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMRALAEALPG 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            I + Y   ++ L   + ++L  GDVV++KSS   GF +L++ LL ++PA
Sbjct: 420 DIKMEYRAGVEQLKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKYPA 469


>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 503

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/467 (45%), Positives = 287/467 (61%), Gaps = 2/467 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW    +  A+    +G +P   ++GISID+R++   +AFFAI+G  +DGHDF+  A + 
Sbjct: 5   LWDVDAMAAAMHARPLGDLPAA-ISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV+   + ++G +  P+  VDDVL A+++LA AAR RSKATI+A+TGSVGKTTTK
Sbjct: 64  GAALHVVSEQKLPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   L++  K +A   S+NNH GVPL+LAR+P D  F IFE+GM+H GEIR L  LVR
Sbjct: 124 EALRHGLAAEGKVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEIRPLVKLVR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT IAPAHL +F  ++EIA AKAEIFEGL   GT  LN DD     L   +   G
Sbjct: 184 PHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPLATMARKAG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  I +FG+S  ADF+L  +    E S ME  + G+++ V     G HMAQN+L  LG  
Sbjct: 244 VTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAVLGAA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQ 362
           S+  AD+     AL  +   +GRG R    +   G   LIDESYNANPASM+AA+ VLS 
Sbjct: 304 SLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALDVLSA 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             P   GRRIAVLGDM E+G+ +   H  L E +    +  V+L+G  + AL D L   +
Sbjct: 364 SRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGDEMKALDDVLESRV 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              + E    L   +  ++  GDVV+VK+S S GF  L++ LL  +P
Sbjct: 424 RREWHENAGELLESLLKTMRTGDVVMVKASKSIGFSPLVDKLLALYP 470


>gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 485

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/478 (46%), Positives = 304/478 (63%), Gaps = 9/478 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   L+ A+ G  +G +P G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MSLLWTSEALVAAMDGRPLGPMPDG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VA+R RS A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L ++ K +A   S+NNH GVPLTLARMP D D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLQAVGKVHASAQSFNNHWGVPLTLARMPDDCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEGLE  G   LN DD+ F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDARFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  +       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPAS 352
           G   ++ AD+D    AL+    + GRGKR+          +   G  TLIDESYNANPAS
Sbjct: 300 GAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSHPGGLITLIDESYNANPAS 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+++L+     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + 
Sbjct: 360 MAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAALADLIVGTGTQTVFLGGPEMR 419

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           AL +ALP  I   Y   ++ L   + ++L  GDVV++KSS   GF +L++ LL +FPA
Sbjct: 420 ALAEALPADIKTEYRAGVEELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 477


>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
 gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
          Length = 473

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/473 (44%), Positives = 294/473 (62%), Gaps = 4/473 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F  GISIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMNGFTVGCLPETF-PGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  +  P+  V DVL +L KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S+NN  GVPLTLARMP+D D+ IFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASFNNCWGVPLTLARMPIDSDYAIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGLDKDGIALLNADDHFFSYLLQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S  AD+Q ++ ++    S M V L  K + +     G HM QN L  L
Sbjct: 240 QFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + AD+   + AL+ F  ++GRG  Y+ +L N G F LIDESYNANP SM+AA+ +
Sbjct: 300 AACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNANPTSMRAALDL 359

Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           L+   P G  GRRIA+LGDM E+G+ S+  H DL + + +  +  V+L G  +  L + L
Sbjct: 360 LAT-GPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLVGKEMKFLANDL 418

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              ++V +SE ++ +   + S + +GD++++KSS       ++  +L+ +  I
Sbjct: 419 SSHVNVCHSENIEEILPLVFSEISNGDLIMIKSSRRIYLSNIVTAILDRYKVI 471


>gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/472 (44%), Positives = 288/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F +G+SIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTVGCLPEIF-SGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  ++ P+  V DVL AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EE+A AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S +AD+Q+++       S M V    K M +     G HM QN L  L
Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + AD+     AL  F  ++GRG  Y+ +L N G F LIDESYNANP SM+ A+ +
Sbjct: 300 AACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMGVLASDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + V+++E ++ +   + S + +GD++++KSS+      ++  +L  +  I
Sbjct: 420 AYVTVYHAENIEEIVPLVFSEISNGDLIMIKSSHHIYLSNIVAEILNRYKVI 471


>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mesorhizobium sp. BNC1]
 gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chelativorans sp. BNC1]
          Length = 477

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/470 (45%), Positives = 293/470 (62%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  DL+ A+ G   G +P+G V GISIDSR++   EAFFAIKG  +DGHDF   A
Sbjct: 1   MTLLWTSDDLVAAVGGRPFGALPEG-VTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GAGL+V++ + + ++G L++P   V DVL AL  LA AAR RS+  +IA+TGS GKT
Sbjct: 60  MAAGAGLLVISEEKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  ALSS+   +A   S+NNH GVPL+LAR+P   DF IFE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHALSSVGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPLTQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+PHIA++T IA AHL +F  ++EIA AK EIF G+   G   +N DD  F+LL   + 
Sbjct: 180 LVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADMAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ ++ FG++  + F+L + +   + S + +++ G+ +       G HM QN L  +
Sbjct: 240 EAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIGAPGRHMVQNALSVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +  ADV   + AL  F  + GRGK +   + +G FTLIDESYNANPASMKAA+ VL
Sbjct: 300 GAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANPASMKAALQVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   GRRIAVLGDM E+G  S+  H  L ++++      + L+G  + AL D  P 
Sbjct: 360 DSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLLAGTEMKALADNAPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              V Y  T++ L   +   L  GD ++VKSSN  G  RL+++LL+ +PA
Sbjct: 420 GRLVEYRPTVEELQPLLLELLQPGDAIMVKSSNGIGLSRLVDVLLKNYPA 469


>gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp.
           1-1C]
          Length = 472

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/472 (44%), Positives = 288/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G +IG +P+ F  G+SIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTIGCLPEIF-PGVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  ++ P+  V DVL AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S +AD+Q+++ +     S M V    K M +     G HM QN L  L
Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + AD+     AL  F  ++GRG  Y+ +L N G F LIDESYNANP SM  A+ +
Sbjct: 300 AACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G+RIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVGGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLVGKEMGVLARDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + V+++E ++ +F  + S + +GD++++KSS+      ++  +L  +  I
Sbjct: 420 AYVTVYHAENIEEIFPLVFSEISNGDLIMIKSSHHIYLSNIVTEILNRYKVI 471


>gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR
           15-3]
          Length = 473

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/472 (44%), Positives = 289/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F +GISIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTVGCLPEVF-SGISIDSRTLVEGDVFFCIKGRHLDGHDFATHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +   + P+  V DV  AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL +  K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETAGKVHANLSSLNNCWGVPLTLARMPIDSDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ ++T IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  I SFG+S  A++Q ++       S M V L  K + +     G HM QN L  L
Sbjct: 240 QCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + A++   + AL  F  ++GRG  Y+ +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      +GRRIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMRVLASDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             I V++++ ++ +F  + S + +GD++++KSS+      ++N +L  +  I
Sbjct: 420 PHITVYHAQDIEEIFPLVFSEISNGDLIMIKSSHRIYLSNIVNEILSRYKVI 471


>gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
 gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/474 (43%), Positives = 291/474 (61%), Gaps = 10/474 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW    L++A++   +G+   G + GISIDSRS+   +AFFAI G  +DGHDF+ +A + 
Sbjct: 5   LWETGVLIEAMRARPVGMDLPGGITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV+   + ++G +  P+  VDDVL AL +LA AAR RSKA IIA+TGSVGKTTTK
Sbjct: 65  GAALHVVSEKRLPALGRMQAPMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS+    +A + S+NNH GVPL+LAR+P D  F IFE+GM+H GEIR L  LVR
Sbjct: 125 EALRQGLSACGSVHASVASFNNHWGVPLSLARLPADSRFAIFEIGMNHPGEIRPLVKLVR 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH A++T IA AHL +F  ++EIA AKAEIFEG+   G+  +N DD+    L A + A G
Sbjct: 185 PHAAIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGSAIINADDAKCMRLAAAAKAAG 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  + +FG+++ ADF++ ++   +E + +   + G+ + V     G H AQN L  LG  
Sbjct: 245 VTNVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQ 362
            +  AD+    +AL+ +   +GRG+R++  +   G   L D+SYNANPASM+AAI  L+ 
Sbjct: 305 HVAGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLAN 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
                 GRRIAVLGDM E+G  S + H +LAE L    I+ V L G  +  L +AL    
Sbjct: 365 AKLSENGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARVLLVGEEIKPLAEALGDEE 424

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              + H   +E  + LF    S +  GD ++VK+S S G  +++  L++ +P I
Sbjct: 425 IECTTHKTPTEAEEQLF----SDMRAGDAIMVKASRSIGLEKVVAALVDRYPPI 474


>gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
 gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
          Length = 473

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 204/469 (43%), Positives = 290/469 (61%), Gaps = 2/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G  IG +P+ F +GISIDSR++   + FF IKG H DGHDF   A
Sbjct: 1   MTALWDKQALIAAIDGFVIGCMPETF-SGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG+++V  + +  +  +S P+  V DVL AL KLA AAR RS+A IIAITGSVGKT
Sbjct: 60  YARGAGVLIVAENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L+++ K +A + S NN  GVPLTLARMPV+ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQVLATVGKVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHADEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ ++T IA  H+  F  ++ IA AKAEIFEGL++ G   LN D+ FF  L  K+ 
Sbjct: 180 LVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEGLDEEGVALLNADNGFFSYLVRKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+++N+D+Q R  +  ++ S M V + G+   +     G H+ QN L  +
Sbjct: 240 QCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGRHIVQNSLAVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
               ++  D      +LS F  ++GRG RY+  L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G  S+  H DL + +   + + V+L G  +  L   L 
Sbjct: 360 LATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFLFGEAMKFLAIDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + V+Y+E ++ +   I + + +GD++++KSS S     ++  LL+ +
Sbjct: 420 AYVKVYYAENIEKILPLIFAEISNGDLLMIKSSRSLYSSDIVTALLDHY 468


>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
 gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
          Length = 476

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 202/468 (43%), Positives = 278/468 (59%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +PLWT    ++A  G   G      + GISIDSR++ P +AF AI G   DGHD+++ A+
Sbjct: 3   DPLWTLDAFVEAAGGRLQGDA-GAEITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAM 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA + +V  D +  + +    V  VDD L AL K+ VAAR RS A I+A+TGSVGKT 
Sbjct: 62  EAGASVALVGEDRLPDLPADGRYVV-VDDPLEALRKIGVAARDRSNARIVAVTGSVGKTG 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L + L+   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI  L  +
Sbjct: 121 TKEALRLTLAESGKVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNHAGEISPLVKM 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+ +ITT+ P HL  F  +E+IA AKAEIF+GLE  G   LN D+  F+LLK  + A
Sbjct: 181 VRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLAAA 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I++FG+  +AD  L+K       S ++  + G+ +       G H  +N L  L 
Sbjct: 241 AGVSKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLT 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V  L AD+  A  AL      +GRG+  R  + +G F LIDESYNANPASMKAA++VL 
Sbjct: 301 AVVDLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +      GRRIAV+GDM E+G  +   H +L + ++  NI  V+ +G H+ AL   LP  
Sbjct: 361 EAPVTRPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAVYCAGPHMHALWKLLPHD 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           +  HY E    L   + S +  GDVV++K S       L+  L +E+P
Sbjct: 421 LRGHYCEEAKDLEDVLLSDVRSGDVVMIKGSLGTRMGPLVEALKKEYP 468


>gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
 gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
          Length = 476

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/472 (42%), Positives = 277/472 (58%), Gaps = 10/472 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +PLWT    + A  G + G V    + GISIDSR++ P +AF AIKG   DGHD++  A+
Sbjct: 3   DPLWTSEVFIDACGGTAKGDV-GAHITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFG----VDDVLGALNKLAVAARLRSKATIIAITGSV 117
           + GA L +V  D   S+G L  P  G    VDD L A+  L VAAR R+ A I+A+TGSV
Sbjct: 62  EAGASLALVAED---SLGDL--PDDGRYVVVDDPLEAMRALGVAARARTNARIVAVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT TKE L +AL+   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI  
Sbjct: 117 GKTGTKEALRLALAPSGKVHASVASFNNHWGVPLTLARMPADTDFGVFEIGMNHAGEITP 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +VRPH+A+ITT+   H+  F  +E+IA AKAEIF GLE  G   LN D+  ++LL+ 
Sbjct: 177 LVQMVRPHVAIITTVEAVHIEFFESVEKIAQAKAEIFNGLEPDGVAILNRDNKQYDLLRF 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +    ++ + +FG+  + D  L+      + + +E  + G+ +       G H+ QN L
Sbjct: 237 LAATAAVRNVQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSL 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V+ L AD+     AL      +GRG++ R ++  G   LIDESYNANPASM+AA 
Sbjct: 297 AVLTAVADLGADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAF 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           SVL+Q +  G GRRIAV+GDM E+G  +   H +L   +    I  V+ +G H+ AL D 
Sbjct: 357 SVLAQATLGGSGRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPHMAALWDK 416

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           LP  +  H+ E    L   +   +  GDVV++K S       L+  L +E+P
Sbjct: 417 LPDDVKAHHREEAKDLIELLLKDVQPGDVVMIKGSLGTRMGPLVEALKKEYP 468


>gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
 gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis]
 gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
          Length = 472

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/473 (44%), Positives = 284/473 (60%), Gaps = 5/473 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL A+ G +IG +P+ F  G+SIDSR++   + FF IK    DGHDF   A
Sbjct: 1   MTVLWDQKILLSAMDGVAIGCLPESF-PGVSIDSRTLVKGDIFFCIKN-RLDGHDFAAQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GAG +V+  + +  +  LS P+  V DVL AL +LA  AR RSKA IIA+TGSVGKT
Sbjct: 59  LARGAGALVIAQNRLDDMKQLSAPLIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L ++ K +A I S+NN  GVPLTLA+MP+D D+GIFE+GM+H  EIR L  
Sbjct: 119 TTKEALKKVLQTVGKVHANIASFNNCWGVPLTLAQMPLDSDYGIFEIGMNHKDEIRSLVK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT IA  H+  F  +EEIA AKAEIFEGL+  G   LN D  FF  L  K+ 
Sbjct: 179 LVCPHVALITHIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAE 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K I SFG+S  AD+Q ++       S M V+  G+ + +     G H+  N L  +
Sbjct: 239 QCNVKKILSFGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAISV 359
                + AD+     ALS F   +GRG RYR +L  G  F LIDESYNANP SM+AA+++
Sbjct: 299 AACDAVGADLSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNL 358

Query: 360 LSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           LS I P G  GRRIAVLGDM E+G  S+ FH  L + +     + V+L G  +  L   L
Sbjct: 359 LS-IGPVGACGRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFLFGKEMKFLAVDL 417

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              + VHY+E ++ +   I + +  GD+++VKSS+S     ++   L+ +  I
Sbjct: 418 SSYVEVHYAEHVEEILPLIFTEISKGDLIIVKSSHSTHSSHIVAAFLDRYKVI 470


>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Azorhizobium caulinodans ORS 571]
 gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
           caulinodans ORS 571]
          Length = 476

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 209/465 (44%), Positives = 274/465 (58%), Gaps = 4/465 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T  ++L A  G + G +    V GISID+R++ P +AFFAI G + DGH ++  A++ 
Sbjct: 6   LYTPEEILAATGGTARGTLAD--VTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALEN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV  D V   G    P+  V DVLGAL  L  AAR RS+A I+A+TGSVGKTTTK
Sbjct: 64  GASLAVVAADRVQ--GLPDGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L IALS+  +T+A   SYNNH GVPL+LAR P    +G+FE+GM+H GEI  L  +VR
Sbjct: 122 EALRIALSADGETHASAASYNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPLVRMVR 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVITT+   H++ FSGIEEIA AKAEIF+GLE  GT  LN D+  F+ L A + A G
Sbjct: 182 PHVAVITTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVASARAKG 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +K I SFG     + +L+        S +   + G  +       G H+ QN L  L  V
Sbjct: 242 VKNIVSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAV 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D+  A  AL+   P  GRG     +++ G  TL+DESYNANPASM+AAI VLS+ 
Sbjct: 302 RLLGGDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRT 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRRIAVLGDM E+G      H +LAE L    I  V+ +G  + AL + LP S  
Sbjct: 362 PVGPRGRRIAVLGDMLELGTEGAQHHRELAEALEAGKIDRVFCAGPLMHALWEVLPSSRK 421

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             Y+     L   I +++  GD ++VK SN      L+  L E F
Sbjct: 422 GGYAVHASHLEPLISAAIRAGDTLMVKGSNGSRMGPLVKALAERF 466


>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
          Length = 478

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 205/466 (43%), Positives = 276/466 (59%), Gaps = 2/466 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   + +A+     G +P+  +NGISIDSR+IAP EA+FAIKG  +DGH F+  A++ 
Sbjct: 5   LWTTAAMAEAMHATRSGALPES-INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G GL V+     A   S  +P+  V DVL  L  LA AAR R++A I+A+TGSVGKT+TK
Sbjct: 64  GGGLAVIAQSQRAKF-SGDLPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   L +   T+    S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  LVR
Sbjct: 123 EALRTVLQAQGATHVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAGEIEPLVKLVR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+S F  L  ++ A G
Sbjct: 183 PHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFARLAERAKACG 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  I +FG++++AD +L      +E S +   +    +       G HMA N L  L   
Sbjct: 243 VARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAAS 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +++  D+  +  AL+ F P  GRG R+   L  G  TLIDESYNANPASM AA+SVL ++
Sbjct: 303 TLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRV 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +   +GRRIAVLGDM E+G   +  H  LA  ++   I  V+  G  +  L DALP +  
Sbjct: 363 AIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFCCGPLMHDLWDALPSARK 422

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             YSET  GL   + + +  GD ++VK S       ++  L + FP
Sbjct: 423 GGYSETSVGLESQLVAGVRAGDAIMVKGSLGSRMKVIVTALEKNFP 468


>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
            [Ahrensia sp. R2A130]
 gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
            [Ahrensia sp. R2A130]
          Length = 1015

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/472 (40%), Positives = 280/472 (59%), Gaps = 10/472 (2%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            PLWT   + +A +G     +P G     + G+SID+RS+ P +A+FAI+G  +DGH F+ 
Sbjct: 542  PLWTLDAMGEATKGW----LPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVA 597

Query: 59   HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             A   GA + VV  D V  +      +  VDDVL AL +L +AAR R+ A ++AITGSVG
Sbjct: 598  AAHAAGATVSVVAKDWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVG 657

Query: 119  KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KTTTKEML   L++    +A + S+NNH GVPLTLARMP D DF + E+GM+H GEI  L
Sbjct: 658  KTTTKEMLRTGLAACGHVHAAVASFNNHWGVPLTLARMPADSDFAVIEIGMNHPGEITPL 717

Query: 179  THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + RPH+A+I  +A  HL  F  ++EIA AK+EIF+GL   GT  LN DD    ++  +
Sbjct: 718  VQMTRPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNADDERLPIMLDR 777

Query: 239  SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +    +     FG++ +AD +L K       S +   + G+ + +     G H+AQN L+
Sbjct: 778  ATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNALV 837

Query: 299  TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             L +  +  AD+     AL+     +GRG++++ ++ QG   LIDESYNANP SM A++ 
Sbjct: 838  VLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASLD 897

Query: 359  VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +L    P   GRRIAVLGDM E+G  S   H D+A+ +S   IS V+L+G  + AL+D L
Sbjct: 898  LLGSREPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRALRDTL 957

Query: 419  --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               + +HV + +T D +   +   +  GDVV+VK+S    F ++IN LLE +
Sbjct: 958  MNTKGVHVTWCDTADEIGAILADEIRSGDVVMVKASLGMAFAKVINHLLERY 1009



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 156/376 (41%), Gaps = 46/376 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +++DSR + P   F A+ G   DG  F+  AV+ GA  V+ + D  A IG +S+PV 
Sbjct: 24  ITNVTVDSRKVKPGGLFIAVSGSAQDGAKFVPMAVENGAVAVLADRD--ADIGKISVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-------TIALSSIKKTYAC 139
              ++  AL  +A     R    I A+TG+ GKT+    L         A+ ++  T   
Sbjct: 82  RNGNIRKALANIASRFHPRQPEIIAAVTGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL---GMSH---------LGEIRFLTHLVRPHIA 187
                +  G   T    PV +   + EL   G++H         L ++R     VR  +A
Sbjct: 142 FAPGRSDYGSLTTPD--PVKLHELLDELAGEGVTHCAMEASSHGLDQMRL--DGVRLAVA 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE---LLKAKSHALGI 244
             T +   HL   + IEE  +AK  +F  L K G   + Y D  F    +  A+ H L +
Sbjct: 198 GFTNLGRDHLDYHADIEEYLTAKLRLFGDLLKPGQPAVIYADDEFSGRVIDHAEFHGLDV 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT+   G+       +++ +Q       EV   G++  V     G     N L+  G+  
Sbjct: 258 KTVGREGEF----IAVKRIEQHRTSQVAEVVCDGETYRVELPLAGEFQLANALVAAGMAI 313

Query: 305 ILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   A  AL+      GR    GK       +G    +D  Y   P +++   +VL
Sbjct: 314 ASGMEAKAAFIALTTLEGASGRLELIGK-----TTEGAACYVD--YAHKPEALE---NVL 363

Query: 361 SQISPHGEGRRIAVLG 376
           + + P+  G+ + V G
Sbjct: 364 AALRPYTTGQLVLVFG 379


>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
            protein [Pseudovibrio sp. JE062]
 gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
            protein [Pseudovibrio sp. JE062]
          Length = 1257

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 206/467 (44%), Positives = 273/467 (58%), Gaps = 2/467 (0%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            PLW   D L+A+ G   G +    + GISIDSR+I P EAFFAIKG ++DGH F   AV+
Sbjct: 785  PLWLLSDFLEAVDGDVHGDLADD-ITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVE 843

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             GA + VV+ + +  +      V  VDDVL AL +L VAAR RSKA IIA+TGSVGKT T
Sbjct: 844  AGASVAVVSREKLGELPEGGRYV-AVDDVLKALERLGVAARARSKARIIAVTGSVGKTGT 902

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            KE L + LS    T+A + S+NNH GVPLTLARM  D +FGIFE+GM+H GEI  L  +V
Sbjct: 903  KEALRLCLSKSGITHAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEITPLVKMV 962

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RPH+A++TT+ P HL  F+ +E+IA AKAEIF G+E  G   LN D+  ++LL+  +   
Sbjct: 963  RPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLLRYLAAVA 1022

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            G+K I SFG    A    +K     + S +   + G+ +       G H   N L  L  
Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            V  L A++  A  AL+     +GRG +    +N G   L+DESYNANPASM+AAI++++ 
Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +     GRRIAVLGDM E+G  S   H DLA  L    I  V+  G H+  L + LP   
Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVGTHMKVLWERLPAQT 1202

Query: 423  HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               YSET D L   + S +   D+V+VK S       L++ L + FP
Sbjct: 1203 RGAYSETSDKLEKDLLSEVRPNDIVMVKGSLGTRMGPLVDALKKRFP 1249



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 156/373 (41%), Gaps = 36/373 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSI 83
           ++G++ DSR++ P   F A+KG   DG  FI  AV  GA  ++++ D +       +  +
Sbjct: 27  ISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAGAAAILIDADRIDDDIRKKAKQV 86

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT----------KEMLTIALSSI 133
           P+   +D    L  +A A   R    ++A+TG+ GKT+             +++ +L +I
Sbjct: 87  PLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTSVAVFVRQIFEYAGLVSASLGTI 146

Query: 134 KKTYACIGSYN-----NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHI 186
               +   SY      + + +   L R+  D   GI    M  S  G  +     VR   
Sbjct: 147 GTVTSTGQSYGGLTTPDPVSLHEDLKRLAED---GITHAAMEASSHGLDQHRLDGVRIVA 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T +   H+     +E+   AK  +F   L   G + ++ +  F + +   +   G+K
Sbjct: 204 AGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVIDPEAQFADRVLEVAKERGLK 263

Query: 246 TIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T  +  FG+    D ++R  +       +E++       V     G     N L+  G+ 
Sbjct: 264 TFTTGFFGE----DLKVRSVQPEGFSQVLELETAEGVFSVALPLAGDFQVSNALIAAGLA 319

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 + TA++AL+V     GR +      N G    +D  Y   P +++   +VL+ +
Sbjct: 320 IAAGVPLQTALEALTVLRGAPGRIEHVGTREN-GALVFVD--YAHKPEALE---NVLAAL 373

Query: 364 SPHGEGRRIAVLG 376
            P   GR I+V G
Sbjct: 374 RPFAPGRLISVFG 386


>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
 gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
          Length = 476

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 201/470 (42%), Positives = 278/470 (59%), Gaps = 3/470 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN PLWT  D +    G   G + Q  + GISIDSR+I   EAFFAIKG  +DGHDF+  
Sbjct: 1   MNAPLWTRDDFIAGANGTPKGELGQD-ITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGT 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA + VV+ D + S+ S    +  VDD L A+ +LAVA+R RS A I+A+TGSVGK
Sbjct: 60  ALANGASVAVVSADKLDSLPSTGRYLI-VDDPLAAMERLAVASRARSNARIVAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L +AL    K +A + S+NNH GVPLTLARMP DVDFG+FE+GMS  GEI  L 
Sbjct: 119 TGTKEALRLALGRSGKVHASVASFNNHWGVPLTLARMPADVDFGVFEIGMSAPGEITPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A ITT+   HL  F  +E IA AKAEIF+GLE  G   LN D++ F+LL   +
Sbjct: 179 RMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQFDLLMFLA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  ++ I +FG+++NAD      ++ +  S +  ++ G+ +       G H   N L  
Sbjct: 239 KADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L  ++  A +AL+     +GRG+     L +G   L+DESYNANPASM+AA+SV
Sbjct: 299 LTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +      GRRIAVLGDM E+GE     H +L++ ++   +  ++  G  +  L D +P
Sbjct: 359 LGEAEITPPGRRIAVLGDMRELGEDGPKLHAELSDPVNEAGVEALFCVGPQMKQLWDRVP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           + + V Y+E    L   +   +  GDVV+VK S       L+  L  ++P
Sbjct: 419 QGLRVMYAEQAADLQDHLLQEIRSGDVVMVKGSLGTRMGPLVEALKTDYP 468


>gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
 gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
          Length = 479

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/470 (43%), Positives = 278/470 (59%), Gaps = 4/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PLWT   L  A+ G  IG  P   + G+SID+R++ P + FFAI+G + DGH ++  A
Sbjct: 4   IEPLWTPDALAAAVGGTLIG-APARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMA 62

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA L VV  D V ++   +  +  VDDVLGAL     AAR R++A I+ +TGSVGKT
Sbjct: 63  ADRGAALSVVERDRVGTLPEGAA-LLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L +AL +   T+A   SYNNH GVPL+LARMP    +G+FELGM+H GEI  L  
Sbjct: 122 TTKEALLLALGADGPTHASAASYNNHWGVPLSLARMPASSAYGVFELGMNHAGEIEPLVK 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITTI P H++ F  +E IA AKAEIF G+E  G   LN D+  FE L A + 
Sbjct: 182 MVRPHVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGAAVLNRDNPHFERLAAAAR 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A GI+ I  FG++ +A  +L   K  ++ S     + G+++       G H+ QN L  L
Sbjct: 242 AAGIQNIVGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVL 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               ++ AD+  A  ALS   P  GRG R    +  GF TLIDESYNANPASM+AA++VL
Sbjct: 302 AAARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                 G GRR+AVLGDM E+G   ++ H D+A   +  ++  V+ +G  + AL +ALP 
Sbjct: 362 GTAPVEGRGRRLAVLGDMLELGPRGEAMHADIAPAAASADL--VFCAGPLMRALWEALPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +    ++     L   +   L  GDVV+VK SN      L   L+E FPA
Sbjct: 420 NRRGAWAPDARALLPLVAERLRGGDVVMVKGSNGSRMGPLARALVERFPA 469


>gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
 gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
          Length = 478

 Score =  342 bits (876), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 209/478 (43%), Positives = 278/478 (58%), Gaps = 24/478 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   + +A+    +G +P+G V GISIDSR+IAP EA+FAIKG  +DGH F+  A++ 
Sbjct: 5   LWTIAAMAEAMSAERVGALPEG-VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G G+ V+     A      +P+  V DVL  L  LA A+R R+ A IIA+TGSVGKT+TK
Sbjct: 64  GGGVAVIAQSHRAEFPD-DLPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   L +  KT+A   S+NNH GVPL+LAR P    F IFE+GM+H GEI  L  LVR
Sbjct: 123 EALRTVLQAQGKTHASAASFNNHWGVPLSLARCPSSARFAIFEIGMNHAGEIEPLVKLVR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+S F  L+ K+ A G
Sbjct: 183 PHLAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKAKASG 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----MEVVHHGIGY-------HM 292
           +  I +FG++  AD +L           ++V L G+      +++HH + Y       HM
Sbjct: 243 VSRIVTFGENAKADARL-----------LDVALHGECSAVHADLLHHDVTYKVGVPGRHM 291

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N L  L   ++  AD+  +  AL+ F P  GRG R    L  G  TLIDESYNANPAS
Sbjct: 292 AMNSLAVLAATTLAGADLALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPAS 351

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA++VL Q +    GRRIAVLGDM E+G   +  H  LA  ++   I  V+  G  + 
Sbjct: 352 MTAAMNVLGQTAIGPRGRRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMR 411

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           AL DALP +    Y+E    L   + + +  GD ++VK S       ++  L + FP+
Sbjct: 412 ALWDALPSAKKGGYAEDSAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFPS 469


>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
 gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
          Length = 498

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 197/464 (42%), Positives = 278/464 (59%), Gaps = 2/464 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   L+  ++    G  P+    G+SID+R++ P + FFAI G + DGHD++  A+
Sbjct: 22  EPLWTGLGLVAPLEARISGGAPRRGATGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAAL 81

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KGA   VV+     S+  L  P++ V DDVL AL +L VAAR R++A I A+TGSVGKT
Sbjct: 82  EKGALAAVVDEAHAESLARLG-PLYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKT 140

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L +ALS+  +T+A + SYNNH GVPLTLARMP   +FG+FE+GM+H GEI  LT 
Sbjct: 141 STKEALRLALSAAGRTHASVASYNNHWGVPLTLARMPRQTEFGVFEIGMNHQGEITPLTR 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITT+AP H+ NF+G+E IA AKAEIF GLE  G   L  D+  FE L A + 
Sbjct: 201 MVRPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPGGVAILPADNPQFERLAAAAK 260

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + SFG  K+A+ +L   +  ++ S +E  + G+ +       G H+A N L  L
Sbjct: 261 RSAAGLVTSFGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVL 320

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L  D   A + L+ F  + GRG+R       G FTLIDESYNANPASM+AA  + 
Sbjct: 321 LAAKALGVDPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLA 380

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             ++P   GRR+AVLGDM E+G  +   H  LA+ L+  +   V+ +G     L DALP 
Sbjct: 381 GALAPPSPGRRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVFAAGPLCKHLFDALPA 440

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++   + E    +   + +++  GD+V+VK SN      ++  L
Sbjct: 441 AMRGEWRENAQMIAPAVAAAVHAGDLVIVKGSNGSKMSAVVEAL 484


>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Xanthobacter autotrophicus Py2]
 gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 203/444 (45%), Positives = 261/444 (58%), Gaps = 1/444 (0%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GISIDSR++ P +AFFAI G + DGH ++  A+  GA L VV  D          P+ 
Sbjct: 43  VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVARDRADGF-PADAPLL 101

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDDVL AL  +A AAR RSKA I+A+TGSVGKTTTKE L IAL +  +T+A   SYNNH
Sbjct: 102 VVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTKEALRIALGADGETHASAASYNNH 161

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPL+LAR P +  +G+FE+GM+H GEI  L  LVRPH+A++TT+ P H++ FS IEEI
Sbjct: 162 WGVPLSLARFPREARYGVFEIGMNHPGEITPLVRLVRPHVAIVTTVEPVHIAQFSSIEEI 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AKAEIF+G+E  G   LN D+  F+ LKA + A GI  I SFG  + AD +L+     
Sbjct: 222 ADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARGISRIVSFGSGEGADVRLKDAALK 281

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S  S     + G  +       G H+ QNML  L    +  AD+  A  ALS   P  GR
Sbjct: 282 SYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAAKLAGADMALAALALSHLKPPPGR 341

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G   +  L  G  TL+DESYNANPASM+AA+ VLS+      GRRIAVLGDM E+G   +
Sbjct: 342 GVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRTPVGPRGRRIAVLGDMLELGPDGE 401

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  LAE +    I  V+  G  + AL  ALP      Y+     L   + +++  GD 
Sbjct: 402 AHHAGLAEAIVAAKIDQVYCCGPQMHALWQALPSERRGGYAIHATHLEPMVAAAIRVGDT 461

Query: 447 VVVKSSNSCGFYRLINLLLEEFPA 470
           ++VK SN      L+  L E F A
Sbjct: 462 LMVKGSNGSRMGPLVKKLAERFRA 485


>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 479

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 203/468 (43%), Positives = 268/468 (57%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  D + A  G ++   P   V GISIDSR++AP +A+FAI+G  +DGHDF+  A+
Sbjct: 4   QPLWT-SDAIIAAMGAAVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L VV T           P+  VDDVL  L  L  AAR R  A +IA+TGSVGKT+
Sbjct: 63  KAGAALAVVETAQRGKFAP-DAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +  +T+A + S+NNH GVPLTLAR P  V + +FE+GM+H GEI  L  +
Sbjct: 122 TKEALRGVLGAQGETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+  F+ L A +  
Sbjct: 182 VRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFKRLTASARK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I SFG    AD +LR     ++ S ++  + G  +    +  G H+A N L  L 
Sbjct: 242 AGVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+  A  AL+   P  GRG R    L QG  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                G+GRRIAVLGDM E+G      H  LA  +    +  V+  G  +  L DAL   
Sbjct: 362 SAEISGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCCGPLMHNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+ET   L   + +++  GDV+++K S       ++  L + FP
Sbjct: 422 KRGGYAETAAALESQVVAAVRSGDVLMIKGSLGSRMKTIVTALEKRFP 469


>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
 gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
          Length = 487

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 271/470 (57%), Gaps = 6/470 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG  P+  V G SID+RS+ P + FFAI+G   DGHDF+  A+ 
Sbjct: 5   PLWTPAALEAATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALD 62

Query: 63  KGAGLVVV---NTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV          +G  L++P  G D VL A+ +L +AAR R+ A IIA+TGSVG
Sbjct: 63  KGAGAAVVAEVRAKEFEGVGPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTL RMP D  FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     + +FG+ + AD    +     + S ++  + G  +       G H+A N L 
Sbjct: 243 AQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS++AA++
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  L +AL
Sbjct: 363 TLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEAL 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P ++    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 423 PMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [polymorphum gilvum SL003B-26A1]
 gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polymorphum gilvum SL003B-26A1]
          Length = 476

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 209/471 (44%), Positives = 283/471 (60%), Gaps = 6/471 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT    + A  G  +G VP G + GISIDSR++ P +AF AI+G  +DGHDF+  A+
Sbjct: 3   QPLWTRDAFVDATGGSVLGDVP-GAIGGISIDSRTLQPGDAFVAIEGERFDGHDFVAAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L +V  D +  + +    V  VDD L AL  LA AAR RS A I+A+TGSVGKT 
Sbjct: 62  EAGAALALVARDRLERLPADGRYVV-VDDPLEALRGLARAARARSHARIVAVTGSVGKTG 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L +AL    +T+A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEI  L  L
Sbjct: 121 TKEALRLALERSGRTHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHAGEITPLVAL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  F  +E+IA AKAEIF GLE  G   LN D++ F+LL   +  
Sbjct: 181 VRPHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPGGVAILNRDNAQFDLLTFLARN 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I +FG+   AD   ++    +  S ++ ++ G+ +       G H+ +N L  L 
Sbjct: 241 AGVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLL 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
            V  L AD+  A  AL      +GRG + R  L  G  TLIDESYNANPASM+AA+ VL 
Sbjct: 301 AVVELGADLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQVLG 360

Query: 361 -SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            +Q+SP   GRRIAVLGDM E+GE + + H  L E ++   +  V+ +G H+  L + LP
Sbjct: 361 DAQVSP--PGRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRRLWELLP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 Y+E   GL   ++  L  GDVV++K S       L+  L +E+PA
Sbjct: 419 VHRRAAYAEEAAGLAAMLKEDLRPGDVVMIKGSLGTRMGPLVEALKQEYPA 469


>gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
 gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
          Length = 498

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 197/453 (43%), Positives = 264/453 (58%), Gaps = 10/453 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           LWT  D   A  GH  G  P  +   G++IDSR +AP + F AI+GP++DGH F+  A+ 
Sbjct: 7   LWTARDAAAATGGHLTG--PSAWAATGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGAALA 64

Query: 63  KGAGLVVVN--TDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            GA   +V+   D + +   L I PV    D L A+  + V AR    A II +TGSVGK
Sbjct: 65  AGAVAALVDHPPDGLPADAPLLIAPV----DPLEAMAAMGVVARANCGARIIGVTGSVGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L   LS+   TYA  GS NNH GVPL+LAR+P D  +G+FELGM+H GEI  L+
Sbjct: 121 TGTKETLRHVLSAQGATYATEGSLNNHWGVPLSLARLPADSAYGVFELGMNHAGEIGPLS 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+PH+A+ITT+  AHL  FSG+E IA AKAEIFEGL+  G   LN D+  +  L A +
Sbjct: 181 RQVKPHVAIITTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAAA 240

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G+  ++ FG  + AD +L      +  S +   ++G+ ++      G H   N L  
Sbjct: 241 RRHGLSHVWGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSV 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L  DV TA +ALS     +GRG R R  L QG FTLIDESYNA+PA+M A + V
Sbjct: 301 LLAVKALGGDVATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEV 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I P   GRR+AVLGDM E+G+ + + HI LAE L    +  V   G H+ AL D LP
Sbjct: 361 LGKIDPGAGGRRVAVLGDMRELGDRADALHIALAEPLRAAQVDTVHACGPHMRALFDRLP 420

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            ++   ++ET   L   + + +  GDV++VK S
Sbjct: 421 EAMRGVWTETSVELAPIVAAGVKGGDVIMVKGS 453


>gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 479

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 201/467 (43%), Positives = 268/467 (57%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A++  + G +P+  V GISIDSR++AP +A+FAIKG  +DGHDF+  A+ 
Sbjct: 5   PLWTSDAMAEAMRAAASGSLPRD-VFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV     A   +   P+  VDDVL  L +L  AAR R  A IIA+TGSVGKT+T
Sbjct: 64  AGAALAVVERAQRAKFAA-DAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +  +T+A + S+NNH GVPL+LAR P DV + +FE+GM+H GEI  L  +V
Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+ +ITT+ P HL  FSGIE IA AKAEIF GL   GT  LN D++ F+ L   +   
Sbjct: 183 RPHLVIITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGTAVLNRDNAMFKRLTDSARKA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+  + SFG    AD +L      ++ S +   + G+ +       G H+A N L  L  
Sbjct: 243 GVGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + AD+  A  ALS   P  GRG R      Q   TLIDESYNANPASM AA+ VL Q
Sbjct: 303 AETVGADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQ 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +    +GRRI VLGDM E+G      H DLAE +    I  V+  G  +  L DAL    
Sbjct: 363 VPVGPQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+ET   L   + +++  GDV+++K S       ++  L + FP
Sbjct: 423 RGGYAETAAALESQVVAAIRAGDVLMIKGSLGSRMKTIVTALEKRFP 469


>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 479

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 264/467 (56%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A++    G +P   + GISIDSR++ P +A+FAI+G  +DGH F+  A+ 
Sbjct: 5   PLWTASAMAEAMRATPSGALPDA-IFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GAGL VV         +   P+  VDDVL AL  L+ A+R R  A +IAITGSVGKT+T
Sbjct: 64  AGAGLAVVERAQRDKFPA-DAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L     +  +T+A + S+NNH GVPL+LAR P    F +FE+GM+H GEI+ L  LV
Sbjct: 123 KEALRAVFGAQGETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHPGEIQPLVALV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  F  +E IA AKAEIF GLE  G + LN D+  F  L+ ++ A 
Sbjct: 183 RPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQFARLRKRAKAH 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  I SFG  + AD +L       E S +   + G+ +       G HMA N L  L  
Sbjct: 243 GISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMAINSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A   LS   P  GRG R+   +  G  TLIDESYNANPASM AAI+VL Q
Sbjct: 303 AELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQ 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   +GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL    
Sbjct: 363 AAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQLWDALSTGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+E    L   + +++  GDV++VK S       ++  L   +P
Sbjct: 423 RGGYAEDAAALESQVIAAIRGGDVIMVKGSLGSRMKTIVTALERRYP 469


>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 486

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 188/467 (40%), Positives = 263/467 (56%), Gaps = 7/467 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   L+  +Q    G VP     GISID+R++   + FFAIKG + DGHD++  A  K
Sbjct: 15  LWTPLGLVTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAK 74

Query: 64  GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA   VV+    D +A+ G    P++ V +VL AL +L  AAR R +A ++A+TGSVGKT
Sbjct: 75  GAMAAVVDEAHADRLAAHG----PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKT 130

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L+     +A + SYNNH GVPLTLARMP D  FGIFE+GM+H GEI  L  
Sbjct: 131 STKEALRLVLTQGGSVHASVASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGEITPLVG 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITT+AP HL  F  +E IA AKAEIF GL   G   ++ D   FE L   + 
Sbjct: 191 MVRPHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPGGVAIIHRDIPQFERLAEAAR 250

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I SFG  + AD +L      S+ S ++  +QG+++       G H A+N L  L
Sbjct: 251 HSPAGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVL 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    ++ A   L+   P+ GRG++       G F LIDESYNANPASM+AA+ + 
Sbjct: 311 LAAKACGVPLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMA 370

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +   G GRRIA+LGDM E+G  +   H  LA++L       V+ +G  +  L DALP 
Sbjct: 371 GTLPLEGVGRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAGPLMRHLYDALPS 430

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +    + L   + +++   D+V+VK SN      L+  L ++
Sbjct: 431 GLRGEWRAKAEDLVPIVGATVQRNDIVLVKGSNGSRMKLLVESLKDK 477


>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
 gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
          Length = 487

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 189/482 (39%), Positives = 268/482 (55%), Gaps = 30/482 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG  P+  V G SID+RS+ P + FFAI+G   DGHDF+  A++
Sbjct: 5   PLWTPAALEAATGGRLIG-TPRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62

Query: 63  K----------------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           K                GAG V            L++P  G D VL A+ +L +AAR R+
Sbjct: 63  KGAGAAVVAEARAKEFEGAGPV------------LAVPGEGEDPVLDAMRRLGLAARART 110

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIA+TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RMP D  FG+FE
Sbjct: 111 GAAIIAVTGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +GM+H  EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N
Sbjct: 171 IGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVIN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+  +E L A + A     + +FG+ + AD    +     + S ++  + G  +     
Sbjct: 231 RDNPNYERLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQLG 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H+A N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESY
Sbjct: 291 TPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESY 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANPAS++AA++ L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+ 
Sbjct: 351 NANPASIRAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFA 410

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G  +  L +ALP  +    + T +G+   + ++L  GD V+VK SNS    R++  +  
Sbjct: 411 VGPLMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKA 470

Query: 467 EF 468
            +
Sbjct: 471 RY 472


>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
 gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
          Length = 487

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/470 (40%), Positives = 272/470 (57%), Gaps = 6/470 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG  P+  V G SID+RS+ P + FFAI+G   DGHDF+  A+ 
Sbjct: 5   PLWTPAALEAATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALD 62

Query: 63  KGAGLVVVNTDMVAS---IGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV          +GS L++P  G D VL A+ +L +AAR R++A I+A+TGSVG
Sbjct: 63  KGAGAAVVAEARAKEFEGVGSVLAVPGEGDDPVLDAMRRLGLAARARTEAAIVAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTL RMP    FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     + +FG+   AD +  +     + S ++  + G  +       G H+A N L 
Sbjct: 243 AQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS++AA++
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  L +AL
Sbjct: 363 TLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEAL 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P ++    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 423 PMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
 gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/468 (41%), Positives = 260/468 (55%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + +A+     G +P+  V GISIDSR++AP +A+FAI+G  +DGHDF+  A+
Sbjct: 4   EPLWTSDAMAEAMAATRSGTLPRD-VFGISIDSRTLAPGDAYFAIRGDVHDGHDFVAAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA L VV         +   P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+
Sbjct: 63  NAGAALAVVEKAQRDKFAA-DAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+A + S+NNH GVPLTLAR P  V + +FE+GM+H GEI  L  +
Sbjct: 122 TKEGLRSVLGAQGPTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSG+E IA AK+EIF GLE  G   LN D   F+ L A +  
Sbjct: 182 VRPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMFDRLSANALR 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L 
Sbjct: 242 ANVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+  A  A+S   P  GRG R    +  G  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AAELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +     +GRRIAVLGDM E+G  +   H  L   +    I  V+  G  +  L DAL   
Sbjct: 362 RAEIGAQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+     L   + +++  GD V+VK S       +IN + + FP
Sbjct: 422 KRGGYAGDATALESQVVAAIRAGDAVMVKGSLGSRMKTIINAIEKRFP 469


>gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
          Length = 479

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 195/464 (42%), Positives = 270/464 (58%), Gaps = 8/464 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  D+L A  G + G       +G+SIDSR++   + F AI G + DGH ++  A++
Sbjct: 4   PLWTKEDVLAATGGKAEGAAWS--ASGVSIDSRTLEAGDLFVAIIGENSDGHAYVEGALK 61

Query: 63  KGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           KGA   +V+  T+ + + G L I    V D L ALN L  AAR R+KA ++A+TGSVGKT
Sbjct: 62  KGAAAAIVSAPTEAMRAAGPLVI----VTDTLAALNALGRAARARTKAKVVAVTGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            TKE L + LS    T+A   SYNN  GVPL+LARMP    FGIFE+GM+H GEI  L+ 
Sbjct: 118 GTKEALKLILSEQGATHASAASYNNLWGVPLSLARMPAATRFGIFEVGMNHPGEITPLSK 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +++ITT+   H+  F  +E+IA AK EIF+GL+K G   LN D+  +E L+AK+ 
Sbjct: 178 LVEPFVSLITTVEAVHMEFFDSVEQIADAKGEIFDGLQKGGVAILNRDNPHYERLRAKAE 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G   I SFG+ + AD +L K     + S +   + G+ +       G H+  N L  L
Sbjct: 238 KSGAGRIISFGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAML 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  L AD+  A  A++     +GRG+R+  +   G FTL+DESYNANP SM+AA+  L
Sbjct: 298 ACVHALEADLAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDAL 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +  P G GRRIAV+GDM E+GE S   H  LA+ +    I  V+  G H+  L  ALP 
Sbjct: 358 GRAKPEGNGRRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVFACGPHMRELYKALPA 417

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    Y+ET   L   ++ ++  GDVV+VK S       L++LL
Sbjct: 418 AAQGAYAETSAELGPLLRDAVEPGDVVMVKGSLGSRMGPLVDLL 461


>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
 gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
          Length = 474

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 181/465 (38%), Positives = 261/465 (56%), Gaps = 6/465 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+   L+ A++    G +P+   +GISID+R++AP + FFAIKG   DGHDF+  A ++
Sbjct: 6   LWSGLGLVGALRARVSGGLPRD-ASGISIDTRTLAPGDLFFAIKGEARDGHDFVAAAFER 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+     ++   + P++ V DV  +L +L   AR RS A ++ +TGSVGKT+TK
Sbjct: 65  GAAGAVVDEAHAGALAGRA-PLYVVKDVQESLERLGARARERSAAYVVGVTGSVGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    LS     +A   SYNN  GVPL+LARMP    FG+FE+GM+H GEI  L  LV 
Sbjct: 124 EMAAAVLSRFGAAHASAASYNNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAALAPLVE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +AP HL +F+ +E IA AK+EIF G+   G   LN DD  FE +   + A  
Sbjct: 184 PHVALVTRVAPVHLEHFACLEAIADAKSEIFSGVVDGGVAILNRDDETFERMLEAAAASR 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++ FG S+ A  +L  +     ++ +E  + G+ +       G H A N L  L I 
Sbjct: 244 AAHVFGFGVSEGAQARLLSYD--PRENSVEADIFGRRLRYRIGAPGRHFALNSLAVLTIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D+  A  AL+ F P +GRG+R +        TLIDESYNANP SM+AA+ +L   
Sbjct: 302 HVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTLIDESYNANPTSMRAALELLGAE 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            P   GRR+AVLGDM E+G  +   H +LA  L    +  ++ +G  +  L  A P  + 
Sbjct: 362 RPI--GRRVAVLGDMLELGPSAAELHAELASDLEAAGVDLLFTAGPLMARLYYAAPERMR 419

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +  T   L   +  SL  GDVV++K SN     R++  +  +F
Sbjct: 420 GAHRATARELEEAVLDSLGAGDVVMIKGSNGSRMTRIVEAIRTKF 464


>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 477

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 185/455 (40%), Positives = 257/455 (56%), Gaps = 10/455 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            PLWT  ++ +A+     GI P      V G+SIDSR++   + F AIKG   DGH FI 
Sbjct: 8   KPLWTGAEIARAL-----GIAPPAADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFIT 62

Query: 59  HAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            A   GA   +V+ D    +  +   P+F VDD   AL +L   AR R+ A I A+TGSV
Sbjct: 63  AAFDNGAAGALVSRDYAPQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSV 122

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML + L     T+A + SYNN +GVPL+LARMP    FG+FE+GM+H GEI  
Sbjct: 123 GKTTTKEMLRVMLGESGPTHASVKSYNNFMGVPLSLARMPAASRFGVFEIGMNHAGEIVP 182

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  LVRPH+A++T +AP H+  F+   EIA AKAEIFEGLE+ G   L  D+  FE L A
Sbjct: 183 LAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPADNPHFESLAA 242

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +     + +  FG S  A+ +L  +++  E S +   +  + +       G H+AQN +
Sbjct: 243 FARERSARVV-PFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPGRHLAQNAV 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  VS+L  +V+ A  AL+ F   EGRG+       +G   +IDESYNANPASM AA+
Sbjct: 302 AALAGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNANPASMHAAL 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL  + P    RRIAVLGDM E+G  +  FH  LA  +    I  V+ +G  + +L ++
Sbjct: 362 DVLGAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVFCAGPLMASLHES 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           LP      ++   + L   +  ++  GD V++K S
Sbjct: 422 LPAEKRGGWANASEDLRGPVLDAVCGGDAVMIKGS 456


>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
 gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
          Length = 487

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/482 (39%), Positives = 266/482 (55%), Gaps = 30/482 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG  P+  V G SID+RS+ P + FFAI+G   DGHDF+  A++
Sbjct: 5   PLWTPAALEAATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62

Query: 63  K----------------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           K                GAG V            L++P  G D VL A+ +L +AAR R+
Sbjct: 63  KGAGAAVVAEARAKEFEGAGPV------------LAVPGEGDDPVLDAMRRLGLAARART 110

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I+A+TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RM  D  FG+FE
Sbjct: 111 GAAIVAVTGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMLEDTRFGVFE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +GM+H  EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N
Sbjct: 171 IGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVIN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+  +E L A + A     + +FG+   AD    +     + S ++  + G  +     
Sbjct: 231 RDNPNYERLLAHAQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQLG 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H+A N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESY
Sbjct: 291 TPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESY 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANPAS++AA+S L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+ 
Sbjct: 351 NANPASIRAALSTLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFA 410

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G  +  L +ALP  +    + T +G+   + ++L  GD V+VK SNS    R++  +  
Sbjct: 411 VGPLMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRSGDAVMVKGSNSMRMVRIVEAVKA 470

Query: 467 EF 468
            +
Sbjct: 471 RY 472


>gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 196/451 (43%), Positives = 265/451 (58%), Gaps = 2/451 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  ++  A++    G +P   + GISIDSR++AP EA+FAIKG  +DGH F+  A+
Sbjct: 4   RPLWTLDEMAAAMRAEGRGTLPAA-ITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L VV         +L +P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+
Sbjct: 63  KAGAALAVVEAARRDQF-ALELPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +  KT+  + S+NNH GVPL+L+R P D  F +FE+GM+H GEI  L  +
Sbjct: 122 TKEALRGVLGAQGKTHVSVASFNNHWGVPLSLSRCPADARFAVFEIGMNHAGEITPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSG+E IA AKAEIFEG+E  G + LN D++ F  L+  +  
Sbjct: 182 VRPHVAIITTVEPVHLEFFSGVEAIADAKAEIFEGVEPDGAVVLNRDNAQFARLQECARK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           LGI  I +FG  + AD +L         S +  ++ G  +       G HMA N L  L 
Sbjct: 242 LGIAKIVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             S+  AD+  A  ALS   P  GRG R   A+  G   LIDESYNANPASM AA++VL 
Sbjct: 302 AASLAGADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +     +GRRIAVLGDM E+G  S   H DL   +   ++  ++  G  +  L +AL   
Sbjct: 362 EAKVGTQGRRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGPLMRNLWNALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               Y+E    L   + +++  GDV++VK S
Sbjct: 422 RRGGYAEDAAALESQVTAAIRSGDVIMVKGS 452


>gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris TIE-1]
          Length = 479

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 200/468 (42%), Positives = 260/468 (55%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + +A+     G +P+  V GISIDSR++AP +A+FAIKG  +DGHDF+  A+
Sbjct: 4   QPLWTSDAMAEAMAATRSGTLPRD-VYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA L VV     A       P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+
Sbjct: 63  NAGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+A + S+NNH GVPL+LAR PVD  F +FE+GM+H GEI  L  +
Sbjct: 122 TKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPVDSRFAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA+ITT+   HL  FSGIE IA AK+EIF GLE  G   LN D   F+ L + +  
Sbjct: 182 VRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALR 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L 
Sbjct: 242 ANVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +  AD+  A  ALS   P  GRG R    +  G  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +    G+GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL   
Sbjct: 362 RAEISGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+     L   + +++  GDVV+VK S       ++  L + FP
Sbjct: 422 KRGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFP 469


>gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
 gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
          Length = 478

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 204/468 (43%), Positives = 267/468 (57%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   +  A++    G +P   + GISIDSR+I P + +FAIKG  +DGH F+  A+
Sbjct: 3   EPLWTLDVMAAAMRAERRGALPAA-ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L V+         +   P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+
Sbjct: 62  KAGAALAVIEAAQRDKFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +  KT+A + S+NNH GVPLTLAR P D  F IFE+GM+H GEI  L  +
Sbjct: 121 TKEALRSVLGAQGKTHASVASFNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLVKM 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA+ITT+ P HL  FSGIE IA AKAEIFEG+E  G + LN D++ F  L+ ++  
Sbjct: 181 VRPHIAIITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGAVVLNRDNAQFARLQRRAKK 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           LGI  I SFG  + AD +L         S +  ++ G  +       G HMA N L  L 
Sbjct: 241 LGIAKIVSFGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAVLA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             S+  AD+  A  ALS   P  GRG R+   +  G  TLIDESYNANPASM AA++VL 
Sbjct: 301 AASLAGADLALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTVLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q     + RRIAVLGDM E+G      H  L E ++   I  V+  G  +  L DAL   
Sbjct: 361 QAGVGTQSRRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMRNLWDALSSG 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+E    L   + +++  GDV++VK S       ++  L + FP
Sbjct: 421 KRGGYAEGSVALESQVVAAIRAGDVIMVKGSLGSRMKVIVTALEKRFP 468


>gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 479

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 260/468 (55%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + +A+     G +P+  V GISIDSR++AP +A+FAIKG  +DGHDF+  A+
Sbjct: 4   QPLWTSDAMAEAMAATRSGTLPRD-VYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA L VV     A   +   P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+
Sbjct: 63  NAGAALAVVEKAQRAKF-APDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+A + S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  +
Sbjct: 122 TKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPADTRFAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA+ITT+   HL  FSGIE IA AK+EIF GLE  G   LN D   F+ L + +  
Sbjct: 182 VRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALR 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L 
Sbjct: 242 ASVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +  AD+  A  ALS   P  GRG R    +  G  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +    G+GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL   
Sbjct: 362 RAEVSGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+     L   + +++  GDVV+VK S       ++  L + FP
Sbjct: 422 KRGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFP 469


>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
 gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
          Length = 487

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 190/470 (40%), Positives = 274/470 (58%), Gaps = 6/470 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG  P+  V G SID+RS+ P + FFAI+G   DGHDF+  A++
Sbjct: 5   PLWTPAALESATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62

Query: 63  KGAGLVVVNT---DMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV     +    +G  L++P    D VL A+ +L +AAR R+ A I+A+TGSVG
Sbjct: 63  KGAGAAVVAAARANEFEGVGPVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTLARMP    FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +HA     + +FG+   AD +  +     + S ++  + G  +       G H+A N L 
Sbjct: 243 AHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVAMNSLG 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L AD+  A  +L+   P  GRG+R    +  G   LIDESYNANPAS++AA++
Sbjct: 303 VLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASIRAALA 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++ + I  V+  G  +  L +AL
Sbjct: 363 TLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVVFAVGPLMAHLFEAL 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P ++    + + +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 423 PMAVRGTAAPSAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 482

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/472 (39%), Positives = 263/472 (55%), Gaps = 6/472 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +L  A  G   G   +  ++G SID+R++ P + FFAI+G   DGHDF+  A
Sbjct: 1   MTALWTREELESATGGCLTGA--ERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDA 58

Query: 61  VQKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GAG  VV+     ++ +    L++P  G D VL A+ +L  AAR R+ A ++A+TGS
Sbjct: 59  LGRGAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTGS 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKT TKE L   LS   +T+A   SYNNH GVPLTL RMP    +G+FE+GM+H  EI 
Sbjct: 119 VGKTGTKEALRHVLSEQGETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEIV 178

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT  VRP IA+ITTIAPAH+ +F+ +  IA AK EIF GL   G   LN D   F+ L 
Sbjct: 179 PLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRLA 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A + A     + +FG+  +AD +  K     + S ++  + G+ +       G H A N 
Sbjct: 239 AHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAALNS 298

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +V  L AD+  A  +L    P  GRG+R    +  G   L+DESYNANP +++AA
Sbjct: 299 LGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVRAA 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++ L+ I     GRRIAVLGDM E+G  +   H  LAE +    +  V+ +G  +  L +
Sbjct: 359 LATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEAARVDLVFTAGPLMRNLFE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ALP S     ++T   L   +  +L  GD V+VK SN     R++  L   +
Sbjct: 419 ALPVSRRGAVADTAADLLEPLARTLRSGDAVMVKGSNGSRMGRIVEALKARY 470


>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
 gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
          Length = 473

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 188/464 (40%), Positives = 255/464 (54%), Gaps = 11/464 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D   A  G S G        G+SID+R+I P + F A+     DGH+F+  A QK
Sbjct: 3   LWTSADAASATGGTSQGTW---TATGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +VN       G  +     VDDVL AL +L  AAR R++A +IAITGSVGKTT K
Sbjct: 59  GASAALVNH---VPDGMDAAKCLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML  ALS   K +A + SYNNH GVPLTL+RMPVD D+ + E+GMS  GEI  L+ + R
Sbjct: 116 DMLKQALSGQGKIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLSRMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITTIAPAHL  F  IE IA  KA IFEGLE  G   +  D     +L   + A  
Sbjct: 176 PHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAAVAH- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG+++ AD +L       + + M +              G H A N +  L  V
Sbjct: 235 AAEVVTFGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVLCAV 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG---FFTLIDESYNANPASMKAAISVL 360
           +   AD   A  ALS + P EGRG+R R  L++       LID+++NANP S+ A + VL
Sbjct: 295 AASGADTTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGLEVL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I+P   GRRIAVLGDM E+G+     H D+A + ++  +  V   G  ++ L  ALP 
Sbjct: 355 AAITPERGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCGPLMVHLDAALPG 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    ++ET   L   +  +L  GDVV+VK S       +++ L
Sbjct: 415 AKRGEHTETAQDLCRAVPRTLRPGDVVLVKGSKGSRVSLVVDAL 458


>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 184/467 (39%), Positives = 250/467 (53%), Gaps = 11/467 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           PLWT  D  +A QG    +   G+  +G+SID+R++ P + F A+     DGHDF   A+
Sbjct: 4   PLWTARDAAEASQGR---LTEGGWAASGVSIDTRTLQPGDLFVALTA-QRDGHDFAQAAL 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  V+V+        + S P   V++VL  L +L   AR RS A  + +TGSVGKT+
Sbjct: 60  DKGAAAVLVSNPE-----ACSGPRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L          +    SYNNH GVPLTLARMP      +FE+GM+H GEI  LT +
Sbjct: 115 VKEALAAVFIKAGPAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEISELTRM 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL N   +E IA AKAEIFEGLE  G   +  DD F   L      
Sbjct: 175 VRPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRLMQAVQG 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G   +  FG +  A  ++  + +  +     + + GK M+      G H A N    + 
Sbjct: 235 SGAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAISVL 360
                  D D A+ ALS   P EGRG  +   L++G    ++DESYNANPASM+AA  VL
Sbjct: 295 AALGAGVDPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P G+ R+IAV+G+M E+G  S++ H  LAE L    +  V   G    AL DALP 
Sbjct: 355 KLRKPSGQDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARALMDALPA 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                + ET +     +     DGDVV+VK SN+ G ++L++ L ++
Sbjct: 415 EHRAAWCETAESAIETLSELARDGDVVLVKGSNASGVHKLVSSLRDK 461


>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
 gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
          Length = 472

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 182/453 (40%), Positives = 257/453 (56%), Gaps = 16/453 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G  +G        G+SIDSRS+ P + F A+ G   DGH+F++    
Sbjct: 14  PLWTADEIAAATGGQVLGDFE---ATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTAD 69

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTT 121
           +GA   +++         ++IP   V+D   AL +L VAAR R+ +    A+TGSVGKT+
Sbjct: 70  RGAAGALISK-------PVAIPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTS 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +   L    K +A + SYNNHIGVPLTLARMP D    +FE+GM+H GEI  L+  
Sbjct: 123 VTRAVEAGLRRAGKAHASVKSYNNHIGVPLTLARMPRDTQRAVFEVGMNHSGEITPLSGF 182

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +RPH   ITT+ P HL NF+ G E +A AKAEIF G+E  G   LN D+ +F LLKA++ 
Sbjct: 183 IRPHAVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAE 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + ++SFG  +    QL ++      + +   L+G ++       G H   N L  L
Sbjct: 243 KAGAE-VWSFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVL 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L  D +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  L
Sbjct: 302 LMLEALDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI VL DM E+G LS  FH DLA  ++  +I  V+ +G  + +L +ALP 
Sbjct: 362 G--AREVAGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFCAGPLMKSLWEALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +    Y+E+   L   + S++  GDVV+VK SN
Sbjct: 420 TRRGGYAESAAELAPQVVSAIRAGDVVMVKGSN 452


>gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
          Length = 466

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/469 (38%), Positives = 270/469 (57%), Gaps = 14/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G +IG      V+GISID+R++   + F A+K    DGH+F+  A
Sbjct: 1   MSALWTSQEAAVATAGQAIG---DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQA 56

Query: 61  VQKGAG--LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           ++KGAG  LV    D VA       P+  V+DV  AL  L  AAR R+ A ++A+TGSVG
Sbjct: 57  LEKGAGAALVTHRPDDVAE----DAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEML   L+   +T+A + SYNNH GVPLTLARMP + +F + E+GM+H GEI  L
Sbjct: 113 KTSTKEMLATMLADQGRTHAAVASYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RPH+A++TT+A  HL  F  +  IA  KA I EGLE  G   LN D +  ++LK +
Sbjct: 173 ARQARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEE 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  LG++ ++ FG+S    ++L + +   E +  +V++ GK +E+    +G H A N L 
Sbjct: 233 AERLGVQHLW-FGESGQG-YRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALG 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V+ L  D   A + L+++ P +GRG R    +  G   ++D+SYNANP SM AA+ 
Sbjct: 291 ALVCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALE 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+      +GR+IA LGDM E+G      H  +A++ ++ +I  +   G  +  L  AL
Sbjct: 351 VLAATPNPEKGRKIAYLGDMGELGPKEAELHRGMADLKAVSDIDCIHCIGPLMANLHAAL 410

Query: 419 PRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           P +    HY+ + D L   +   L  GD+V+ K S S G  ++++ + E
Sbjct: 411 PEARRGKHYATSSDALP-DLAGQLSCGDIVLAKGSLSTGLGKIVDGIRE 458


>gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
 gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 470

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 267/466 (57%), Gaps = 4/466 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PLWT  ++  A+ G   G   +    G+SIDSRSI P + F A++GP++DGHD +  A
Sbjct: 2   IRPLWTSAEVAAAVAGTPSGAAWE--AQGVSIDSRSIEPGDLFIALEGPNHDGHDHVASA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   +V+   +    +   P+  V D + AL  L +A+R RS A I+A+TGSVGKT
Sbjct: 60  LANGAAAALVHK--LPRGTAEDAPLVLVKDTMTALQDLGIASRARSTARIVAVTGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            TKEML +ALS    T+  +GS+NNH GVPL+LARMP  V + IFE+GM+H GEI  L  
Sbjct: 118 GTKEMLALALSDQGATHYSVGSFNNHWGVPLSLARMPTAVQYAIFEIGMNHPGEITPLVR 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITT+   H+  F+   EIA+AKAEIF+G+E  GT  L  D++ F  L   + 
Sbjct: 178 MVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGVETGGTAVLPRDNAHFAYLNDAAR 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG    A  +L       + + +   +  + +       G   A N L  L
Sbjct: 238 TAGLKDIRSFGNHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAVL 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  L ADV+ A  AL+     +GRG+R R  +  G F LIDESYNA+P SMKAAI++L
Sbjct: 298 LAVEALGADVNLAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAML 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + + P   GRRIAVLGDM E+G    S H  +AE +  +NI  V+ +G     L DAL  
Sbjct: 358 ASVRPAKGGRRIAVLGDMLELGPQGPSLHASVAETVESWNIDLVFTAGTLTAHLHDALAA 417

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++   D +   +++ +  GDVV+VK S      R++N L E
Sbjct: 418 PRRGGHAADSDAVAALVKAGVRPGDVVMVKGSAGSRMGRVVNALAE 463


>gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
 gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
          Length = 485

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 192/473 (40%), Positives = 271/473 (57%), Gaps = 8/473 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   +L A  G ++   P   ++G+SID+R++   + FFAI+G   DGHDF+  A+
Sbjct: 3   EPLWTLDAVLAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDAL 62

Query: 62  QKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            +GAG  VV+    A +      +++P  G D VL A+ KLA AAR RS+A I+A+TGSV
Sbjct: 63  ARGAGAAVVSQARAADLAGAGPLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVTGSV 122

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT TKE L   L++   T+A + SYNNH GVPLTL RMP    FG+FE+GM+H GEI  
Sbjct: 123 GKTGTKEALRHVLAAQGATHASVASYNNHWGVPLTLGRMPAASAFGVFEIGMNHAGEIAP 182

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LVRP +AV+TT+ P H+ +F  +  IA AK EIF GLE  G   +N D+  FE L  
Sbjct: 183 LTRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCGLEPGGVAVINRDNPHFERL-- 240

Query: 238 KSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           + HAL  +   I SFG+   AD +  +     + S ++ ++ G  +       G H A N
Sbjct: 241 RDHALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHTALN 300

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  +  V  L AD+  A  +L+   P  GRG+R    L  G   L+DESYNANPAS++A
Sbjct: 301 SLAVMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPASVRA 360

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L+ I   G  RRIAVLGDM E+G  +   H DLA  ++ + I  V+++G  +  L 
Sbjct: 361 ALATLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFVAGPLMAELF 420

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +ALP       + +   L   + + +  GD V+VK SNS    R++  L   +
Sbjct: 421 EALPAGTRGVAAASSADLLDAVVAEIRPGDAVMVKGSNSTRMGRIVEALKARY 473


>gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
 gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
          Length = 492

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 190/464 (40%), Positives = 266/464 (57%), Gaps = 4/464 (0%)

Query: 4   LWTFHDLLQAIQG-HSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           LWT  D   A  G H  G  P  ++  G+SIDSR++ P + F A+KGP++DGHD++  A+
Sbjct: 10  LWTAADAAAATNGRHPTGRTPGHWMATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDAL 69

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +V+  +  ++     PV  VDD L AL  L   ARL ++  +IA+TGSVGKT 
Sbjct: 70  AHGAAAALVSR-LPGNV-PPEAPVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTG 127

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L + L +   T+A  GS NNH GVPL+LAR P D  +G+FELGM+H GEI  L+ +
Sbjct: 128 TKEALKLCLDARGPTFATQGSLNNHWGVPLSLARFPADAHYGVFELGMNHAGEIGPLSRM 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P +A+ITT+   HL  F+ +E IA AKAEIFEG+   GT  LN D+  F  L A +  
Sbjct: 188 VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAART 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I+SFG  + AD  L +    +  S +   ++G+ ++      G H   N L  L 
Sbjct: 248 QGLTRIWSFGTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLL 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            VS    DV  A + LS   P +GRG R R AL +G FT+IDESYNA+P S+ AA +VL 
Sbjct: 308 AVSAAEGDVAAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLG 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +  P   GRRIAVLGDM E+G  + S H  LA+         V+  G ++  L D LP +
Sbjct: 368 KADPGAGGRRIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKFLFDRLPAA 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   ++E    L   +  ++  GDVV+VK S      R+++ L+
Sbjct: 428 LRGRHTEDSAALAPLVADAVRAGDVVMVKGSAGSRMSRVVDALV 471


>gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
 gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
          Length = 465

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 198/459 (43%), Positives = 264/459 (57%), Gaps = 2/459 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A++    G +P   +NGISIDSR+IAP EA+FAIKG  +DGH F+  A++ GA L V
Sbjct: 1   MAAAMRADRRGALPAA-INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V         +   P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+TKE L   
Sbjct: 60  VEAAQRDQFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSV 118

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + +  KT+A + S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  +VRPH+AVI
Sbjct: 119 VDAQGKTHASVASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEITPLVKMVRPHVAVI 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+ P HL  F+GIE IA AKAEIFEG+E  G + LN D++ F  L  ++  LGI  I S
Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGAVVLNRDNAQFARLHGRAKKLGIARIVS 238

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG  + AD +L         S +  ++ G  +       G H+A N L  L   S+  AD
Sbjct: 239 FGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGAD 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  A  ALS   P  GRG R   A+  G   LIDESYNANPASM AA+ VL        G
Sbjct: 299 LALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKLG 358

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           RRIAVLGDM E+G  S   H  LAE ++   +  ++  G  +  L +AL       Y+E 
Sbjct: 359 RRIAVLGDMLELGPKSADLHRGLAEAINANAVDMIFCCGPLMRNLWNALSSGKRGGYAED 418

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              L   + +++  GDV++VK S       +++ L + F
Sbjct: 419 SVALESQVTAAIRSGDVIMVKGSLGSRMKVIVSALEKRF 457


>gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
 gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
          Length = 474

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 184/467 (39%), Positives = 255/467 (54%), Gaps = 10/467 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NPLWT    + A  G  IG  P   V+GISID+R++ P + F A++    DGHDF+  A+
Sbjct: 7   NPLWTSGQAMAATGGMLIG-EPGWTVSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAM 64

Query: 62  QKGAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KGA   +V        G   + P   V D L  L  L  AAR RS A  +A+TGSVGKT
Sbjct: 65  EKGASACLVER------GDTGVEPALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KE L     S    +  + SYNNH GVPLTLARMP D    +FELGM+H GEIR L+ 
Sbjct: 119 SVKEALAAVFRSSGPAHWSVKSYNNHWGVPLTLARMPRDTGRAVFELGMNHAGEIRDLSS 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A+IT IAPAHL +   +E IA AK+EIF+GLE+ G      DD   E +   + 
Sbjct: 179 LVRPHVALITRIAPAHLEHLGSVEAIADAKSEIFDGLEQDGVAIYPSDDPLAERIARHAR 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +  FG S +A  ++ +++   + S     + G          G H A N     
Sbjct: 239 HSCAAFLLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIF 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
              +    D     +ALS    + GRG+  R AL + G FTL+D++YNANP SM AAI+ 
Sbjct: 299 AAAAGAGLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAA 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L    P  +GRRIAVLGDM E+G      H +LA+ L+   +  V   G  +  L DALP
Sbjct: 359 LGAADPGPDGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGRRMKHLHDALP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +++   Y++   G    ++S +  GDVV++K SN  G +++ ++LL+
Sbjct: 419 KTVRAGYAQDAAGGLEQVKSLVRSGDVVLIKGSNGSGLHKIASVLLD 465


>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 182/457 (39%), Positives = 255/457 (55%), Gaps = 17/457 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            PLWT  ++  A  G   G   Q F   G+SID+R+I P + F A+ G   DGH+F+  A
Sbjct: 3   EPLWTAEEIAAATGGKLAG---QAFRAGGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
            +KGA  V+ +  +         P   V D L AL KL  AAR R+ +A   A+TGSVGK
Sbjct: 59  FEKGAAGVIASRQVFG-------PAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+  + +   L+     ++ + SYNNHIGVPLTLARMP      +FE+GM+H  EIR L+
Sbjct: 112 TSVTQAIMAGLTLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIRPLS 171

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +VRPH  VITT+ P H  NF  G   +A AKAEIFEGLE  G   LN D+ +F+LLK +
Sbjct: 172 RMVRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGE 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +   G  T+ +FG  +  D +L  ++  +  + ++ +L GK+++      G H   N + 
Sbjct: 232 AERAG-ATVRTFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L ++  L  D+D  + AL  F P  GRG   +     G FTLIDESYNANP SM +AI+
Sbjct: 291 VLLMLEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIA 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L   +    GRRI  L DM E+G  +++FH  LAE L    I  V+ +G  + +L DAL
Sbjct: 351 TLG--ARETAGRRIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFCAGPLMKSLWDAL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           P +    Y+E+   L   +  ++  GDVV+VK SN  
Sbjct: 409 PPTRRGGYAESAAELAPQVVQAVEPGDVVMVKGSNGS 445


>gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
 gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
          Length = 462

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 180/456 (39%), Positives = 259/456 (56%), Gaps = 16/456 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT  ++ +A+ G   G      V+G+SID+R++ P + F  + G   DGHDF+  AV
Sbjct: 3   DALWTADEIAEAVGGQVAGDF---AVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120
             GA  V+          ++  P   V D   AL  L VAAR R+ +    A+TGSVGKT
Sbjct: 59  ANGAAGVLAAR-------AVDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +    +   L    K +A + SYNNHIGVPLTLARMP D +  +FE+GM+H GEI  L+ 
Sbjct: 112 SVTRAIEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSG 171

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            VRPH   ITT+ P H+ NFS G   +A AKAEI  GL+  G   LN D+ +F+ LK ++
Sbjct: 172 FVRPHAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEA 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +G  T++SFG++  A  +L  ++     + + V L+G+++    H  G H   N L  
Sbjct: 232 EKVG-ATVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCV 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  L    +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  
Sbjct: 291 LLMLEALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKT 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   +    GRR+  L DM E+GE S  FH +LAE ++  N+  V+L+G H+ +L +ALP
Sbjct: 351 LG--ARKVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +    Y+E  + L   +  ++  GDVV+VK SN  
Sbjct: 409 PTRRGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGS 444


>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
 gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
          Length = 475

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 267/467 (57%), Gaps = 4/467 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLW+   L+ A+     G + +    G+SID+R++   + FFAIKG   DGH+F+  A 
Sbjct: 4   EPLWSGLALVGALHARVSGALAR-EATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAF 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KGA   V++    A   S + P+  V DV  +L  L   AR RS A I AITGSVGKT+
Sbjct: 63  EKGAAAAVIDEAHAAEF-SGAGPLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M  + LS   +T+A + SYNN  GVPLTLARMP    FG+FELGM+H GEI  L   
Sbjct: 122 TKDMTRLMLSRFGETHASVASYNNQWGVPLTLARMPAASRFGVFELGMNHAGEITGLVAQ 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+AV+T +A  HL +F+ +E IA AKAEIF  L+  G   +N DD+ +E L A +  
Sbjct: 182 VRPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSALD-GGVAIINRDDATYERLAAAAAP 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I+SFG+S+ A+ +L  +K   +   +E  + GK +       G H+A N L  L 
Sbjct: 241 TA-GHIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALL 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I ++   DV+ A   L+ F P  GRG R +     G FTLIDESYNANP SM++A  +L 
Sbjct: 300 IAAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSMRSAFELLG 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +P   GRRIAVLGDM E+G      H +LA  L+      ++ +G  + +L  A P +
Sbjct: 360 ATTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFTAGPLMASLYYAAPNA 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +   +  T   L   + ++L  GDVV+VK SNS    R++  + ++F
Sbjct: 420 MRAAHRRTALELEEAVLAALRAGDVVMVKGSNSSRMSRIVAAVRQKF 466


>gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
 gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
          Length = 466

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/463 (39%), Positives = 260/463 (56%), Gaps = 10/463 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT ++   A  G + G      V+G+SID+R+IAP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTANEAAAATGGRAQG---DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+   V        P+  VDDV   L  L  A+R R+ A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVSR--VPEGVPADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L    R
Sbjct: 117 EMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAKPAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+A  HL  F  +E IA  KA I EGLE  G   LN D +   +L+  +  LG
Sbjct: 177 PHVAMVTTVAAVHLEAFDNVEGIAREKAAIMEGLEPGGVAVLNADIAEAHVLRDVASDLG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +   + FG+S + D+ L       E++       G+ +E+    +G H A N L  L  V
Sbjct: 237 VSARW-FGESAS-DYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGALACV 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L AD   A  +L+++ P +GRG R    L  G  TL+D+SYNANP SM AA++VL+  
Sbjct: 295 EALGADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVLAAT 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G+GRRIA  GDM E+G      H  LA++ ++  I  +   G  + AL +ALP    
Sbjct: 355 P--GQGRRIAYAGDMKELGPQEVELHAGLADLDAVKGIDKIHCIGPLMRALHEALPEGKR 412

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +T       + S +  GD+V+ K S S    ++++ + E
Sbjct: 413 GGWYQTSAEAVPGLASEIQGGDIVLAKGSLSMALAKIVDGIRE 455


>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 198/476 (41%), Positives = 268/476 (56%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PLWTF +L  A+     G+ P+G     V GISID+R++   + F A+K    DGHDF
Sbjct: 1   MQPLWTFSEL-SAV----FGVAPEGGTDQPVTGISIDTRTLQAGDLFVALKD-QRDGHDF 54

Query: 57  ILHAVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIA 112
           +  A + GA   +V+   V  A  G+L    F V D L AL  L  AAR R    A +IA
Sbjct: 55  VSPAFKAGAAAALVSEGYVRRAEDGAL----FRVSDTLKALEALGRAARDRLSPDARVIA 110

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKT TKEML   LS +  T+A   SYNNH GVPLTLARMP +  FG+FE+GM+H 
Sbjct: 111 VTGSAGKTGTKEMLRACLSHLGVTHASEKSYNNHWGVPLTLARMPRETRFGVFEIGMNHA 170

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEIR LT +VRPH A+ITT+   HL +F  +E IA AK EIFEGL   GT  + +D+   
Sbjct: 171 GEIRPLTKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGTAIIKFDNPHA 230

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             LKA +  LG K + +FG S  AD          + S + V+L  + + +     G H+
Sbjct: 231 ARLKAIAERLGAKAV-TFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMPGRHI 289

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A+N L     +  + AD++TA+  L+   P  GRG R    L+ G   LIDESYNANPAS
Sbjct: 290 AENALAVAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYNANPAS 349

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+AA++ L+ +      RRIAVLGDM E+G  +   H  L + +    I  ++  G H+ 
Sbjct: 350 MRAALATLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGIDVIFACGPHMK 409

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L DALP+S    Y++T   L   + S L  GD V+VK+SN      ++  L  ++
Sbjct: 410 GLYDALPKSKRGGYAQTSSLLQPAVLSELRGGDAVMVKASNGTRLGAVVEALKSKY 465


>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
 gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 186/479 (38%), Positives = 266/479 (55%), Gaps = 26/479 (5%)

Query: 3   PLWTFHDLLQAI--------QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           PLWT  +++ A         +G ++G  P   V G+S D+RS+A  + F A+ G   DGH
Sbjct: 5   PLWTVREIIAATGAALRGAGEGETLGERP---VYGLSFDTRSLAKGDLFIALSGAR-DGH 60

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DF   A  KGA   ++ T   A + S ++P   VDD L AL  LA AAR R    ++A+T
Sbjct: 61  DFAQAAADKGAAAALL-THRPADL-SEALPGLMVDDPLRALEDLARAARQRCFGALVAVT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTKEML  ALS + + +A   S+NNHIGVP++LA +P    FG+FE+GM+H GE
Sbjct: 119 GSVGKTTTKEMLRAALSPLGEVHAAAKSFNNHIGVPISLASLPQQAAFGVFEIGMNHAGE 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  LVRPH+A+IT++A  HL NFS ++ IA AKAEI  G+ + G   L  D+ ++E 
Sbjct: 179 ITPLVDLVRPHVAIITSVAAVHLENFSSVDGIADAKAEILSGIRRGGAAVLPSDNPYYER 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQGKSMEVVHHGI-G 289
           L +++   G++ I  FG    A   +  W          S  E+ + G+   V+  G+ G
Sbjct: 239 LVSRARECGVERIVPFGFGDGARPGI--WGTAPVMIEGGSRTEIAIAGER-HVLELGVPG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +   + L  D+++ I+ L+ F    GRG R+   +      ++DESYNAN
Sbjct: 296 THQVSNALAVIAAGAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNAN 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SM +A++ L +  P   GRR+AVLG+M E+G  S + H  LA  +     + VWL+G 
Sbjct: 356 PTSMASALAQLGETEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIEDAGTARVWLAGS 415

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  L+DALP      ++     L   +  SL  GDVV+ K SN+ G    I  LLE F
Sbjct: 416 GMAPLRDALPADRVAEWAPKAPDLLSNLVDSLEQGDVVLFKGSNAAG----IGALLEAF 470


>gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
          Length = 475

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 181/452 (40%), Positives = 258/452 (57%), Gaps = 10/452 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  + + A  G  +G   Q   +G++ID+R++ P + F A+ G   DGHD++  A+Q 
Sbjct: 5   LWTRAEAVVATGGTPLGRDWQ--ASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQT 62

Query: 64  GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA   +V+    D+ AS      P+  V D L  L +L  AAR RS A I A+TGSVGKT
Sbjct: 63  GASAALVSRRPADLAASA-----PLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            +KEML  AL++   T+A  G+ NNHIG PL+LAR   D  F +FELGM+H  EIR L+ 
Sbjct: 118 GSKEMLAAALAAYGTTHASKGNLNNHIGAPLSLARFSRDAAFAVFELGMNHPEEIRPLSR 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH A+IT +   H   F+GIE+IA AKAEIF+GLE  GT+ LN D+S F  L   + 
Sbjct: 178 LVRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHAG 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I+ I  FG   +A+ +L         + ++ ++ G+ M     GIG H A N L   
Sbjct: 238 RLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGVA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L  D    + AL       GRG + + +L  G  TLIDESYNA+P +++AA++V 
Sbjct: 298 ATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPPAVRAALAVF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++  P    RRIAVLGDM E+G  +   H  LAE +       V+L G  + AL  ALP 
Sbjct: 358 AETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFLVGPEMAALAAALPA 417

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++   ++++ + L   + +++  GDVV+VK S
Sbjct: 418 ALVAGHADSSEALAATVAAAVAPGDVVLVKGS 449


>gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
 gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
          Length = 462

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 180/452 (39%), Positives = 255/452 (56%), Gaps = 16/452 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  ++ QA+ G   G        G+SID+RS+   + F  + G   DGHDF+  AV  
Sbjct: 5   LWTADEIAQAVGGQVAGDF---AATGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVAN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           GA  V+    + A       P   V+D   AL  L VAAR R+ +    A+TGSVGKT+ 
Sbjct: 61  GAAGVLAAQPVDA-------PAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSV 113

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              +   L    K +A + SYNNHIGVPLTLARMP D +  +FE+GM+H  EI  L+  V
Sbjct: 114 TRAVEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSFV 173

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +PH   ITT+ P H+ NF  G   +A AKAEIF GL   G   LN D+ +F+ LK ++  
Sbjct: 174 QPHAVAITTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAEK 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G  T++SFG+++ A  +L  +    E++ + V L+G+++       G H   N L  L 
Sbjct: 234 VG-ATVWSFGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLL 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L    +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  L 
Sbjct: 293 MLEALDVPRETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLG 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GRRI VL DM E+GE S  FH +LAE ++  N+  V+L+G H+ +L +ALP +
Sbjct: 353 --ARKVAGRRIVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSLWEALPPT 410

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
               Y+   + L   +  ++  GDVV+VK SN
Sbjct: 411 RRGGYAVVTEKLTAELAGAIRPGDVVMVKGSN 442


>gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
 gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
          Length = 469

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 183/444 (41%), Positives = 258/444 (58%), Gaps = 16/444 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGSLSIP 84
           V+GISID+R++ P + F A+K    DGHDF+  A+ KGAG  LV    D VA+      P
Sbjct: 24  VSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALVTHRPDGVAA----DAP 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V+DV  AL  L   AR R++A +IAITGSVGKT+TKEML   L+   +T+A + SYN
Sbjct: 79  LLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTSTKEMLACMLADQGRTHAAVASYN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+A  HL  F  + 
Sbjct: 139 NHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFEDVA 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  KA I EGLE  G   LN D    ++L A++  LG+   + FG+S   +++L   K
Sbjct: 199 GIAREKAAIMEGLEPGGVAVLNADIDEAQVLAAEAQGLGVAHQW-FGESAT-EYKLLSTK 256

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E +  EV+   + M++    +G H A N L  L  V+   ADV  A + LS++ P +
Sbjct: 257 ISGEATLAEVRCGPEQMQLTIQSLGAHFAMNALGALACVAAAGADVQRAAQVLSLWSPVQ 316

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMC 379
           GRG R   A+  G   L+D+SYNANP SM AA++VL+     G     +GR+IA LGDM 
Sbjct: 317 GRGARVEVAMEGGKLLLLDDSYNANPTSMAAALAVLAATPDLGADAGVKGRKIAYLGDMG 376

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQ 438
           E+G    + H  LA++ +L  I  +   G  +  L  ALP +    HY+ + D +   + 
Sbjct: 377 ELGPQEVALHAGLADLAALETIDTIHCIGPLMAHLHQALPAAQRGFHYATSAD-VLPDLP 435

Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462
           S L  GD+V+ K S S G  ++++
Sbjct: 436 SQLGCGDIVLAKGSLSAGLSKIVD 459


>gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 480

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 199/470 (42%), Positives = 265/470 (56%), Gaps = 9/470 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +  A++    G  P   V G+SIDSR++ P +A+FAIKG  +DGH F+  A++ 
Sbjct: 6   LWTLDAMASAMRAERSG-APSDVVFGLSIDSRTLTPGDAYFAIKGEAHDGHAFVAAALEA 64

Query: 64  GAGLVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA + VV     D  A+   L I    VDDVL AL  LA AAR R +  +IA+TGSVGKT
Sbjct: 65  GAAVAVVAREQRDQFAADARLLI----VDDVLEALRDLARAARARLEGQVIAVTGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L    ++  +T+A + S+NNH GVPL+LAR P    F +FE+GM+H GEI  L  
Sbjct: 121 STKEALRAVFAAQGETHASVASFNNHWGVPLSLARCPASARFAVFEIGMNHAGEIEPLVG 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A+ITT+ P HL  F GIE IA AKAEIF GLE  G + LN D++ F  L   + 
Sbjct: 181 LVRPHVAIITTVEPVHLEFFDGIEAIADAKAEIFAGLESGGAVVLNRDNAQFTRLAECAE 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A GIK I SFG    AD +L       + S +  ++ G+++       G H A N L  L
Sbjct: 241 ARGIKRIVSFGADGRADAKLIDIALQPDCSAIRAEIGGQTVTYKLGMPGRHQAINSLAVL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISV 359
               +  AD+  A   LS   P  GRG R R  ++  G  TLIDESYNANPASM AA++V
Sbjct: 301 AAAELAGADLALAALTLSQVVPAAGRGVRKRLEISHSGEATLIDESYNANPASMAAALNV 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   +P  +GRRIAVLGDM E+G  S   H  L   +    I  V+  G  +  L DAL 
Sbjct: 361 LGGAAPGPQGRRIAVLGDMLELGPRSAELHAGLNAAVKANAIDTVFCCGPMMRHLWDALS 420

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                 Y+E    L   +  ++  GDV++VK S       +++ L + +P
Sbjct: 421 TGKRGGYAENSAALESHVVGAVRAGDVIMVKGSLGSRMKTIVSALEKRYP 470


>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
 gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
          Length = 463

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 248/442 (56%), Gaps = 11/442 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           VNGISID+R+I P + F A+K    DGHDF+  A++KGAG  +V+   + VA       P
Sbjct: 23  VNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSHIPEGVAE----DAP 77

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V+DV  AL  L  A R R+KA ++A+TGSVGKT+TKEML   L+   +T+A + SYN
Sbjct: 78  LLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQGRTHAAVASYN 137

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH GVPLTLARMP D ++ + E+GM+H GEI  L+   RPH+A++TT+A  HL  F  + 
Sbjct: 138 NHWGVPLTLARMPADTEYAVIEIGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDVA 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  KA I EGLE  G   LN D     +L+  +   G+ T + FG++ + D+ L++ +
Sbjct: 198 GIAREKAAIIEGLEPGGIAVLNADLEETPVLRDVAQDAGVATRW-FGQTSD-DYCLQEAQ 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + +   +    +        +G H A N    L  +  L AD++ A+  L  + P +
Sbjct: 256 LSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGALAAIEALGADLELALAGLQGWSPVK 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R+   L  G  T++D++YNANP S+ AA++VL+      EGRRIA L DM E+G  
Sbjct: 316 GRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVLAATPT--EGRRIAYLADMKELGPE 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
               H  LA+  +L  I  V   G  +  L  ALP +    + ET       + + +  G
Sbjct: 374 EARLHAGLADHPALAKIDAVHCIGPLMKHLYAALPENKRGTWVETSAEAASALPAQIQGG 433

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           DVV+ K S S    R+++ + E
Sbjct: 434 DVVLAKGSLSMAVARVVDAIRE 455


>gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
 gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
          Length = 494

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 183/446 (41%), Positives = 254/446 (56%), Gaps = 4/446 (0%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LS 82
           V G+SID+R++   + FFAI+G   DGHDF+  A+ +GAG  VV+    A +      + 
Sbjct: 36  VAGLSIDTRTLKVGDLFFAIRGETRDGHDFVRDALARGAGAAVVSQARAAELAGSGPLVV 95

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P  G D VL A+  LA AAR RS A ++A+TGSVGKT TKE L   L++   T+A + S
Sbjct: 96  VPEAGDDPVLAAMRALAAAARARSAARVLAVTGSVGKTGTKEALRHVLAAQGTTHASVAS 155

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNH GVPLTL RMP    FG+FE+GM+H GEI  L  LVRP IA++TT+ P H+ +F  
Sbjct: 156 YNNHWGVPLTLGRMPAGSAFGVFEIGMNHAGEIAPLARLVRPEIAIVTTVEPVHIEHFRS 215

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +  IA AK EIF GLE  G   LN D+  FE L A + A     I SFG+   AD +  +
Sbjct: 216 LSGIADAKGEIFCGLEPGGIAILNRDNPHFERLSAHALASRAGRIVSFGEHPQADVRAER 275

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + S ++  + G  +       G H A N L  +  V  L AD+  A  +L+  HP
Sbjct: 276 IVMRPDLSIVDASVLGVPVTYQLGTPGRHTALNSLAVMAAVHALGADLALAALSLAQLHP 335

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GRG+R    L +G   L+DESYNANPAS++AA++ L+ I   G+GRRIAVLGDM E+G
Sbjct: 336 PVGRGERTLLRLREGEALLVDESYNANPASVRAALATLAGIEIRGQGRRIAVLGDMLELG 395

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +   H +LA  +  + I  V+ +G  +  L ++LP       + T   L   + S + 
Sbjct: 396 SEAPRLHRELAASVEQHGIDLVFAAGPMMAELFESLPAGTRGVAAPTSAELLDAVLSEIR 455

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468
            GD V++K SNS    R++  L   +
Sbjct: 456 PGDAVMIKGSNSIRMGRIVEALKARY 481


>gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 464

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/440 (40%), Positives = 245/440 (55%), Gaps = 13/440 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPV 85
           +G+SID+R++ P + F A+K    DGHDF+  A++KGA   +V    D VA+      P+
Sbjct: 24  SGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALVTHIPDDVAA----DAPL 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDDV  AL  L  AAR R KA ++ +TGSVGKT+TKEML   LS   +T+A + SYNN
Sbjct: 79  LIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASVASYNN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H GVPLTLARMP D ++ + E+GM+H GEI  L    RPH+A++TT+A  HL  F  +  
Sbjct: 139 HWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLARQARPHVALVTTVAAVHLEAFESVAG 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA  KA IFEGLE  GT  +N D    ++L+  +   G   I  FG++ + D++L    Q
Sbjct: 199 IAHEKAAIFEGLEAGGTAIVNADLDHTDILRTCAARHG-AVIVDFGRTAS-DYRLTGVTQ 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +  +  G+ +       G H A N L  L     L  D+D AI  L+ + P  G
Sbjct: 257 SPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGALAACVALGVDLDAAIAGLAKWAPVTG 316

Query: 326 RGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           RG R R AL + G   L+D+SYNANP SM AA+ VL+        RRIA LGDM E+G  
Sbjct: 317 RGVRERLALPDGGQIELLDDSYNANPTSMAAALDVLAAAQ---GARRIAFLGDMKELGPQ 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            ++ H  LA+V ++  I  V   G  + AL +ALP      + ET D +   +   +  G
Sbjct: 374 ERAMHAGLADVPAMARIDKVHCIGPLMRALHEALPEDKRGLWFETSDEMARHLPGLVQAG 433

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D V+ K S S    R+++ L
Sbjct: 434 DAVLAKGSLSMALARIVDGL 453


>gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 470

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 190/479 (39%), Positives = 262/479 (54%), Gaps = 29/479 (6%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-- 57
           MN PLWT  +   A+ G   G  P     G+SIDSR++ P + F A++GP++DGHD +  
Sbjct: 1   MNRPLWTSAEAAAAVAGTPSG--PAWEARGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS 58

Query: 58  ----------LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
                     +H + KG     V  D          P+  V D + AL  L VA+R RS 
Sbjct: 59  ALAGGAAGALVHKLPKG-----VQDDA---------PLILVRDTMTALQDLGVASRARSS 104

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A I+A+TGSVGKT +KEML +ALS    T+  +GS+NNH GVPL+LARMP    + IFE+
Sbjct: 105 AHIVAVTGSVGKTGSKEMLALALSDQGVTHYSLGSFNNHWGVPLSLARMPAGSRYAIFEI 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GM+H GEI  L  +VRPH+AVITT+   H+  F+   EIA+AKAEIF+G+E  G   L  
Sbjct: 165 GMNHPGEITPLVRMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPR 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D++ F  L   +   GI  I SFG    +  +L       + + +   L  + +      
Sbjct: 225 DNAHFAFLAEAAAKAGITHIRSFGNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGV 284

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N L  L  V  L ADV+ A  AL+     +GRG+R R  ++ G F LIDESYN
Sbjct: 285 AGRQWATNSLAVLLAVEALGADVNLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYN 344

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P SMKAAI+ L+ + P   GRRIAVLGDM E+G      H  +AE +  +NI  V+ +
Sbjct: 345 ASPVSMKAAIAALASVKPAKGGRRIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTA 404

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           G     L DAL       ++   D +   +++++  GDVV+VK S      R++N L E
Sbjct: 405 GILTAHLHDALAEQRRGGHAADSDAVSALVKAAVRPGDVVMVKGSAGSRMGRVVNALAE 463


>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
 gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
          Length = 477

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 181/477 (37%), Positives = 251/477 (52%), Gaps = 30/477 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G   G        G+SID+R+IAP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAQEAAAATGGQVAG---DWDATGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+       G     +  VDDV   L KL +AAR R +A ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVSH---VPEGVDPARLLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +  K +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ + R
Sbjct: 116 EMLRCVLGAQGKVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLSRMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +APAHL+ F  +E IA  K  IFEGLE  GT  +N D     +L+  + A  
Sbjct: 176 PHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMAQARA 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE------QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              I  FG++     ++ +   C        ++W    L   ++       G H A N +
Sbjct: 236 AHVI-DFGEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVP------GRHFAVNGM 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASM 353
             L +   L  D   A+ AL  + P  GRG R    L+    Q    LID++YNANPAS+
Sbjct: 289 GVLAVAHALGLDRALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASL 348

Query: 354 KAAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            A++ VL+   P         GRRIA +GDM E+GE   + H  LA   S+  I  V   
Sbjct: 349 GASLEVLAAAEPRDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKIDVVHCV 408

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G  +  L  ALP     H++E    +   ++  L  GDVV+VK S S    R+++ +
Sbjct: 409 GPLMRELWTALPYEKRGHWTEDSRAMAARVRHDLDAGDVVLVKGSLSMALSRVVDAI 465


>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
 gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
          Length = 478

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 172/466 (36%), Positives = 258/466 (55%), Gaps = 19/466 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  ++  A +G   G      V+GISIDSR +A  + F A+K    DGH+++  A++K
Sbjct: 5   LWTSKEIAAATKGEMTG---DWKVSGISIDSREVAKGDLFVALK-DLRDGHEYVSSAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   ++++D         +P   VD+ L AL  L +AAR RSKA   AITGSVGKT+ K
Sbjct: 61  GAAGALISSDCG------DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+     S  K +  + S+NNH GVPLTLARMP D    IFE+GM+  GEI   + +VR
Sbjct: 115 EMIAQIFRSKGKAHWNVKSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIAPRSRMVR 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HAL 242
           P IA++T IA AHL     IE +A  K++IF GLE  G   L  +D FF+ +KA+     
Sbjct: 175 PQIALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEPNGVAILPREDDFFDYMKARVFDCQ 234

Query: 243 GIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              ++ SFG +++ AD +L  ++     S     + G+++    + IG H   N ++ + 
Sbjct: 235 PTASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAVLAIL 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +       A   L  + P  GRG      +  G  TL+D+SYNANP SM+A ++ L 
Sbjct: 295 VGRLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGLAALG 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q S    GR+IA+LG+M E+G  +   H DL + +    +S ++L+G  +L L+D+   +
Sbjct: 355 QRS----GRKIAILGEMRELGPDADKLHADLKDPILKAGVSELFLAGDGLLPLRDSCSNN 410

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +   V ++ T   L L +  SL+ GDVV++K SN+ G   + N L
Sbjct: 411 ENEPGVCWASTSKELVLMVNKSLISGDVVLIKGSNASGIASVANAL 456


>gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
 gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
          Length = 477

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 187/485 (38%), Positives = 261/485 (53%), Gaps = 31/485 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G    +      +G+SID+RSIAP + F A+K    DGHDF+  A++K
Sbjct: 2   LWTAAEAAAATGGR---VASDWVASGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   +      S  +  VDDV   L  L  AAR R    ++A+TGSVGKT+TK
Sbjct: 58  GAAAALVSR--IPEGVDNSEKLLLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS     +A   SYNNH GVPLTLARMP D DF + E+GM+H GEI  L  + R
Sbjct: 116 EMLRTVLSEQGTVHAAEKSYNNHWGVPLTLARMPKDADFAVIEIGMNHPGEIAPLARMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +APAHL+ F  +E IA  KA IFEGLE  G    N D +   +L+ K+    
Sbjct: 176 PHVAMVTIVAPAHLAAFENLEGIAREKASIFEGLEPDGIAIYNGDLAVSGILRDKAAETA 235

Query: 244 IKTIYSFGKSKNADFQLRKWK---QC---SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            K+I SFG++     +L   +    C   + ++W  V L  K M       G H A N +
Sbjct: 236 RKSI-SFGETAGTHHRLTSVQVMDACTVATGRAW-RVPLLFKVMVP-----GRHFAMNAM 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----NQGFFTLIDESYNANPASM 353
             + ++S L  D   A+ AL+ ++P  GRG R +  L    ++    LID++YN+NPAS+
Sbjct: 289 GVMAVISALRLDRALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASL 348

Query: 354 KAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            AA+ VL+    H       +GRRIA LGDM E+G    + H  LA    +  I  V   
Sbjct: 349 GAALEVLAAAGTHDHVGRRDKGRRIAYLGDMKELGAQEVTLHEALATSPWIEKIDLVHCV 408

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL--L 465
           G  + AL   LPR    H++ET D +   +   L  GDVV+ K S S G  R+++ +  +
Sbjct: 409 GPLMRALWMKLPREKRGHWTETADKMAEGVVRDLDAGDVVLAKGSLSMGLGRVVDAIRKM 468

Query: 466 EEFPA 470
            + PA
Sbjct: 469 RQAPA 473


>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 459

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 182/470 (38%), Positives = 244/470 (51%), Gaps = 23/470 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            PLWT   + QA  G    I    F V+G++ DSR +   + F A+KG + DGH FI  A
Sbjct: 3   TPLWTARTIAQATGG----IASADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  +V  T       ++  P   V D   ALN L  A+R RS   II +TGS GKT
Sbjct: 59  IAAGAAGIVCET-------AIDHPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKT 111

Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL   +  K +  + SYNNH+GVPL+LARMP   DFGIFE+GM+H GE+  L
Sbjct: 112 GTKEALFAALDRFRPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGELAAL 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRPH+A++TTIAPAH+  F   E IA AK EIFEGLE  GT  + +D   +  L+AK
Sbjct: 172 TRIVRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGTAIIPFDSPHYARLRAK 231

Query: 239 S--HALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  HA     I SFG ++ AD +   W       S +  Q+Q   +       G H   N
Sbjct: 232 AEQHA---AHIVSFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVAN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L  V  +  D+  A  A +      GRG R+R A+  G   +IDESYNANPASM A
Sbjct: 289 SLAVLAAVKAVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASMAA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I    Q++     R++A+LG M E+G   +++H  LA  L    +    L G  +  L 
Sbjct: 349 TI---GQLAGESADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFALLVGEEMAPLA 405

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            AL   I   +          +   +  GD V+VK SNS G   ++  L+
Sbjct: 406 KALEGRIDFAHVPAHPDATARLGGLIRPGDAVLVKGSNSVGLSHVVTALI 455


>gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 256/469 (54%), Gaps = 15/469 (3%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN PLWT  D+  A  G +           ISID+R++   + F A+K    DGHDF+  
Sbjct: 1   MNRPLWTSSDMELATGGDASAAFE--VTGSISIDTRTLQKGDLFVALKD-QRDGHDFVEA 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA   +V+  M         PV  V+DVL AL ++ +AAR+R  A   A+TGS GK
Sbjct: 58  AFKAGAAGALVSRPMPGG------PVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEML     +    +  + S+NNH GVPLTLARMP +    +FE+GM+  GEI   +
Sbjct: 112 TSVKEMLAQIYRAHGPAHWNVKSFNNHWGVPLTLARMPEETQRAVFEIGMNTPGEIAPRS 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH  ++T IA AHL     +E IA  KA IF GLE  GTI L  DD+F + L  ++
Sbjct: 172 QMVRPHTGIVTCIAAAHLQGLGSVEGIAEEKANIFAGLESGGTIILPADDTFLDYLSERA 231

Query: 240 HAL-GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +      + +FG S +A  ++  ++     S +EV + G+ + V  + +G H AQN+  
Sbjct: 232 RSFCPTGNVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVAA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
            L   S  +  V    +ALS + P  GRG      L   G  TLID++YNANPASM+AA+
Sbjct: 292 ALLAASQASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASMRAAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+Q       RR+A LGDM E+G+ S + H  LA  +    +  V+L G  +  L +A
Sbjct: 352 KGLAQ---RAGTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFLVGAEMQHLSEA 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           LPR +    + T D L+  +Q +L  GDV+++K SN+ G  R+ + L +
Sbjct: 409 LPRDLQQVSAPTADELWNQLQKALRAGDVLLIKGSNASGMGRIADRLRQ 457


>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
 gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
          Length = 462

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 175/462 (37%), Positives = 254/462 (54%), Gaps = 11/462 (2%)

Query: 4   LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           LW+  D ++A  G S I  V     NGISID+R++   + F A+K    DGH++I  A +
Sbjct: 3   LWSSKDAVKATSGVSRINWV----ANGISIDTRTLKMGDLFVALK-DQRDGHEYIKIAFE 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V+   V      ++P+  VDDVL AL  +A  AR R++A +I ITGSVGKT+T
Sbjct: 58  NGAAAALVSR--VPDGLDENLPLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTST 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L +  KT+A   SYNNH GVPLTLARMP + DF + E+GM++  EIR L  L 
Sbjct: 116 KEMLKSILIANGKTHAAERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLAKLA 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  +A++  +AP HL  F  IE IA AKAEIFE L  +    +N D S F++L      +
Sbjct: 176 KLDVAIVLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQKV 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K I +FG +  AD++L    +   ++++  ++            G H A N +     
Sbjct: 236 RSKLI-TFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  +        S +    GRGKR    +  G   LIDESYNANP SM+AAI+VLSQ
Sbjct: 295 AEAVGIERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLSQ 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 GR++A+LGDM E+GE    FH +LA++ S+  I  ++L G  +  LK  LP   
Sbjct: 355 --SEASGRKVAILGDMGELGENEMLFHSNLAKIQSIKAIDILYLVGPMMRCLKKELPSQK 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              + E++D L   I++ ++  D ++VK SN     +++  L
Sbjct: 413 QCLWFESVDALIKEIENLVIINDTIMVKGSNYTKVSKIVEKL 454


>gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
 gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 257/476 (53%), Gaps = 21/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  G +          G+SID+RSI P E F A+K    DGHDF+  A
Sbjct: 1   MAVLWTSIDAAVATGGRATRPF---MATGLSIDTRSIRPGEMFVALKD-VRDGHDFVADA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+   +    S   P+  V DVL AL  L  A R R++A +IA+TGSVGKT
Sbjct: 57  LKKGAACALVSR--IPEGCSEEDPLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS+  + +A   S+NNH GVP+TLARMP + DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRAVLSAQGRVHAAEASFNNHWGVPITLARMPAEADFAVIEVGMNHPGEISPLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAK 238
           + RPH A+ITT+A AHL  F  +++IA  KA IF+GLE  GT  +    + +   L  AK
Sbjct: 175 MARPHAAMITTVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAK 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     + +FG +  +D++L   K   + + ++ +  GK M       G H A N L 
Sbjct: 235 ARA---GQVVTFGPAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALG 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMK 354
            L +   + AD   A   + ++ P  GRG R R  L+       F L D+++NANPASM+
Sbjct: 292 VLALARAVGADPAVAALDIGLWAPPAGRGTRERIWLDLIDEAQSFDLFDDAFNANPASME 351

Query: 355 AAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A + VL+   P         GRR+A+LGDM E+G      H  +AE+ ++ +I  V L+G
Sbjct: 352 AGLEVLAGQVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAG 411

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             + AL +ALPR     + ET   L       +  GDVV+VK S       +++ L
Sbjct: 412 PRMRALHEALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKGSKVSLVVDAL 467


>gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 174/442 (39%), Positives = 244/442 (55%), Gaps = 14/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           V+GISID+R+IAP + F A+     DGHDF+  A+ KGAG  +V+   + V   G L + 
Sbjct: 23  VSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSRIPEGVGEDGRLLL- 80

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              VDDV   L  L  A R R++A ++A+TGSVGKT+TKEML   L +  +T+A + SYN
Sbjct: 81  ---VDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVASYN 137

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+A  HL  F  + 
Sbjct: 138 NHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFDDVA 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  KA I EGLE  G   LN D +  ++L+A   A G + + SFG++   D++L   +
Sbjct: 198 GIAREKAAIMEGLEPGGVAVLNADIAEADILRAA--ARGARQL-SFGRAAQ-DYRLTGVE 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                +          +       G H A N L  L     L AD   +++ L  + P +
Sbjct: 254 VADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALGADAGQSLQGLERWTPYK 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R   +L  G  TL D+SYNANP S+ AA+ VL+        RR+A LGDM E+G  
Sbjct: 314 GRGARETISLAGGPVTLFDDSYNANPTSVGAALEVLAGTPGT---RRVAFLGDMKELGPE 370

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
               H  LA + ++  +  V   G  + AL DALP +    ++ET   +   + + +  G
Sbjct: 371 ELPLHAGLAALPAMERVDQVHCIGPLMRALFDALPEAKRGRWTETGAEMLAELPALVAPG 430

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           D V+VK S S G  RL++ L E
Sbjct: 431 DAVLVKGSLSMGLARLVDGLRE 452


>gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Asticcacaulis excentricus CB 48]
 gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Asticcacaulis excentricus CB 48]
          Length = 462

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 173/457 (37%), Positives = 246/457 (53%), Gaps = 12/457 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PLWT  +LL+A  G   G+          GI+ DSR + P + F A+ G   DGHDF+
Sbjct: 1   MTPLWTGTELLKATGGTFAGLSGDASALHATGITFDSRQVQPGDIFLALSGVR-DGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A  +GA   +    +         P   V DVL AL KL   AR R+ A   A+TGSV
Sbjct: 60  GQAFAQGAVCALTRKPVDGG------PCLMVPDVLKALEKLGAYARDRAPAMRGAVTGSV 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+  +M+  ALS   + ++ + S+NNHIGVPLTLARMP D +  +FE+GM+H  EI  
Sbjct: 114 GKTSVTQMVMAALSRAGRAHSAVKSFNNHIGVPLTLARMPADTERAVFEIGMNHANEITP 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L+ LV P   +ITT+   H  NF  G E +  AKAEIF+GL+  G   LN D+ +F  L 
Sbjct: 174 LSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGGLAILNADNHWFAELN 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++  +G K +  FG+++ AD  L   +    ++ +   L G+ +       G H A N 
Sbjct: 234 ERASEMGAK-VQCFGEAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   L  D  T + ALS F   +GRG  ++ A+  G  TLIDESYNANP SM A 
Sbjct: 293 LSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVAT 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++ L+       GRRIAV+ DM E+G      H  LA  L+   +  V+++G  + AL D
Sbjct: 353 LNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVDQVFVAGPLMRALWD 412

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            LP ++   Y+ T   L   ++++L   D+V++K SN
Sbjct: 413 VLPEALRGAYAATAAELLEPLKTALRPNDIVMIKGSN 449


>gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 474

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 185/464 (39%), Positives = 249/464 (53%), Gaps = 23/464 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  D + A  G            G+SID+R+IA  + F A+K    DGH+F+  A
Sbjct: 1   MNALWTSQDAIAATGG---ACTVDWVAEGVSIDTRTIAKGDLFVALK-DQRDGHEFVAQA 56

Query: 61  VQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +  GA   +V+   D VA       P+  V +VL AL  L  AAR R+ A ++A+TGSVG
Sbjct: 57  LAAGASAALVDHIPDNVAP----DAPLLIVPNVLTALEALGTAARARTSAKVVAVTGSVG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEML + LS+  K +A   SYNNH GVPLTLARMP D DF + E+GM+H GEI  L
Sbjct: 113 KTSTKEMLRVMLSTQGKCHAAEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L +P I +ITT+A  HL+ F  I+ IA  K+ +F GL + G   +N D    ++L   
Sbjct: 173 AKLTQPDIGLITTVAAVHLAAFDNIQGIAVEKSALFSGLTENGVAIVNGDLETSDVLMNA 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +     KTI  FG     +F L       +Q+  + Q    +        G H A N L 
Sbjct: 233 AQG---KTILRFGSDAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALG 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG----FFTLIDESYNANPASMK 354
            L  VS L AD+  A   L+ + P  GRG++    L++G      TLID++YNANP S+ 
Sbjct: 290 ALASVSALGADMGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVA 349

Query: 355 AAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AAI +LS  +P        +GRRIAVLGDM E+G      H  LAE+  +  I  V   G
Sbjct: 350 AAIEILSVSNPIDNIGRIRKGRRIAVLGDMLELGTEEHQLHAGLAELKEIAKIDLVHCVG 409

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             + +L  A+P S   H+ ET   L   ++S L  GDVV+VK S
Sbjct: 410 PLMKSLWSAVPNSKRGHWFETSSKLAELMKSQLDAGDVVLVKGS 453


>gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 175/447 (39%), Positives = 244/447 (54%), Gaps = 17/447 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+SID+R++ P + F A+     DGHDF+  A+ KGAG  +V+   +      + P+ 
Sbjct: 23  VSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVS--RIPEGVRTTDPLL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DVL AL +L  A R R++A ++AITGSVGKT+TKEML   L    + +A   SYNNH
Sbjct: 80  VVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHAAEASYNNH 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPLTLARMP + DF + E+GM+H GEI  LT L RPH+A+ITT+A  HL  F  +E I
Sbjct: 140 WGVPLTLARMPRETDFAVIEIGMNHPGEIAPLTRLARPHVALITTVAAVHLEAFENVEGI 199

Query: 207 ASAKAEIFEGLEKTGTIFL--NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           A  KA I+EGLE  G   L    D +   L +A   A  ++T   FG       QL    
Sbjct: 200 AREKAAIYEGLEPAGVAILPGEIDTTTILLAEADKRAGRVET---FGLGAANTLQLTHLD 256

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                +  ++++   +  V     G H A N +  LG V  L  DV  A + L+ + P  
Sbjct: 257 LTDTATVAQIEVGEVTHLVRLATPGRHFAMNAVAVLGAVRALGGDVTLAARDLTFWTPPA 316

Query: 325 GRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLSQISP-HG-----EGRRIAVL 375
           GRG R    L+   +   TLID+++NANP SM AA+ VL+   P HG      GRR+AVL
Sbjct: 317 GRGTREFVQLDPVEREGVTLIDDAFNANPTSMAAALEVLAATKPAHGHGRIARGRRVAVL 376

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G    + H  LA++  L  I  V  +G  +  L  ALP      +SE  + L  
Sbjct: 377 GDMLELGPDEAALHAGLADLDHLDAIDQVHCAGPLMHHLWAALPAEKQGRWSEKAEDLAA 436

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              + +  GDV++VK S      R+++
Sbjct: 437 EAHNLIDAGDVLLVKGSKGSRVSRVVD 463


>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/439 (39%), Positives = 240/439 (54%), Gaps = 4/439 (0%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+ IDSR++   + F A+ G   DGH  +  A+  GA   +V+  + A I +  + V  
Sbjct: 37  TGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSR-IPAGIATDRLLV-- 93

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L  LA A+R R    ++ +TGS+GKT TKEMLT AL    + +A  G+ NNH 
Sbjct: 94  VEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLNNHF 153

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTLARMP D D  + ELGM+H GE+  L  L RPH+A+IT +A  HL  F  +E IA
Sbjct: 154 GLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVEAIA 213

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AKAEI EG+E  GT+ LN D+ FFE L+  + A GI    SFG    AD ++      +
Sbjct: 214 DAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCAVDA 273

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             + +   +    +       G H A N L  L +V  L  D+ +A   L+   P  GRG
Sbjct: 274 NGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPRGRG 333

Query: 328 KRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           +R   +L   G   +ID++YNA+P S+ AA++ LS   P   GRRIAVLGDM E+G  + 
Sbjct: 334 RRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGPQAA 393

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H DLA++     I  V+ +G  +  L DALP S    ++   D L   + ++L  GDV
Sbjct: 394 KLHADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLVLAALRPGDV 453

Query: 447 VVVKSSNSCGFYRLINLLL 465
           V+VK S      R +  LL
Sbjct: 454 VMVKGSKGSLVSRTVTALL 472


>gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 463

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 174/467 (37%), Positives = 255/467 (54%), Gaps = 16/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    + +A++G +        V  ++ DSR I   + FFA+KG   DGH+++  A
Sbjct: 1   MKALWQSEAIARAVKGTASADFS---VRNVAFDSREIQKGDLFFALKGTESDGHNYVEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA   VV       +  +  P   VDD   AL  LAVA+R R+   II ITGSVGKT
Sbjct: 58  FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TKE L +AL  +  +K +  + SYNNH+GVPL+LARMP +  FGIFE+GM+H GE+  L
Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A+IT IAPAH + F+    IA AK+EIFEGL   G   + +D  + +LL AK
Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + I SFG  + A  + +   ++   +  +   ++ + +         H   N +
Sbjct: 231 AQEKKAE-IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +V  +  D+  A  AL      +GRG+R+   +  G   +IDESYNANPASM A I
Sbjct: 290 AVLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L    P  + RRI +LGDM E+G+ S ++H  LA+ LS   + HV L G  + AL+++
Sbjct: 350 KALEN-EPK-DKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEES 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L   I     E  D     +   L   D+++VK SNS G   +++ L
Sbjct: 408 LAGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSAVVSSL 454


>gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 254/462 (54%), Gaps = 12/462 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A +G S          G+SID+R++ P + F A+K    DGHDF+  A++K
Sbjct: 3   LWTATEAAGATKGRS---TTDWQATGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+   +        P+  VDDV   L  L  AAR R+ A ++ +TGSVGKT+TK
Sbjct: 59  GAGAALVSR--IPEGVPEDAPLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +  KT+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L H  R
Sbjct: 117 EMLASILETRGKTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAHQAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+ ++TT+A  HL  F  +  IA+ KA +F+GL   GT  +N D     +L++++ A G
Sbjct: 177 PHVGLVTTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQARG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I  FG+    D+ L   +Q ++    + ++    +       G H A N L  L   
Sbjct: 237 AK-IVEFGRMAR-DYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAAC 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQ 362
             L  D+D AI  L  + P +GRG R   AL N     L+D+SYNANP SM+AA+ VL+ 
Sbjct: 295 VELGVDLDQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAA 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +     RRIA LGDM E+G   Q+ H  +A+V ++  +  V   G  + AL  ALP   
Sbjct: 355 SAGQ---RRIAFLGDMKELGAQEQAMHAAIADVAAMAQVDQVHCIGPLMRALHQALPEGK 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              ++ET  G+ L +   + DGD V+ K S S    ++++ L
Sbjct: 412 RGLWAETSAGMALHLPELIRDGDAVLAKGSLSMALAQIVDGL 453


>gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 187/485 (38%), Positives = 260/485 (53%), Gaps = 40/485 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G    +     V G+SID+R++ P + F A+     DGHDF+  A
Sbjct: 1   MSALWTGVEAAAATGGR---LTRDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+   V      + P+  VDDVL AL  +  AAR R+KA I+A+TGSVGKT
Sbjct: 57  LEKGAAAALVS--RVPEGLPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L++  +T+A   SYNNH GVPLTLARMP D ++G+ ELGMSH GEI  L+ 
Sbjct: 115 STKEMLRTVLAAAGRTHASEASYNNHWGVPLTLARMPADTEYGVLELGMSHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+PH+ VITT+A AH   F  IE IA  KA IFEGL   GT  +N D +   +L A + 
Sbjct: 175 MVQPHVGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAK 234

Query: 241 ALGIKTIYSFGKSKN-----ADFQLRKW-KQCSEQSW-----MEVQLQGKSMEVVHHGIG 289
             G + I +FG++        D ++R      S ++W     M+V   G+          
Sbjct: 235 DKGARVI-TFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGR---------- 283

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QG-FFTLIDES 345
            H A N L  +     L  D   A+ AL+ + P  GRG R   +L+   +G  F LID++
Sbjct: 284 -HFAVNALAVIAAADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDA 342

Query: 346 YNANPASMKAAISVLSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           YNANP SM AA+ VL+   P         GRR+AVLGDM E+G    + H  LAE  +L 
Sbjct: 343 YNANPTSMAAALDVLALSEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHALT 402

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               +   G  + AL  ALP +   ++  T + +   I      GDVV+VK S       
Sbjct: 403 AADLIVCVGTRMKALHAALP-AERAYWLATPEEILPHITRIADAGDVVLVKGSKGSRVSI 461

Query: 460 LINLL 464
           +++ L
Sbjct: 462 IVDAL 466


>gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 463

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 173/467 (37%), Positives = 254/467 (54%), Gaps = 16/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    + +A++G +        V  ++ DSR I   + FFA+KG   DGH+++  A
Sbjct: 1   MKALWQSEAIARAVKGTASADFS---VRNVAFDSREIQKGDLFFALKGTESDGHNYVDAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA   VV       +  +  P   VDD   AL  LAVA+R R+   II ITGSVGKT
Sbjct: 58  FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TKE L +AL  +  +K +  + SYNNH+GVPL+LARMP +  FGIFE+GM+H GE+  L
Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A+IT IAPAH + F+    IA AK+EIFEGL   G   + +D  + +LL AK
Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + I SFG  + A  + +   ++   +  +   ++ + +         +   N +
Sbjct: 231 VQEKKAE-IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +V  +  D+  A  AL      +GRG+R+   +  G   +IDESYNANPASM A I
Sbjct: 290 AVLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L    P  + RRI +LGDM E+G+ S ++H  LA+ LS   + HV L G  + AL+++
Sbjct: 350 KALEN-EPK-DKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEES 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L   I     E  D     +   L   D+++VK SNS G   +++ L
Sbjct: 408 LAGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSTVVSSL 454


>gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis BS107]
          Length = 470

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 177/446 (39%), Positives = 251/446 (56%), Gaps = 12/446 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GISID+RSIA  + F A+K    DGHDF+  A++KGAG  +V+      +G    P+ 
Sbjct: 23  VDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR-RPEGVGD-DAPLL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDDV  AL  L  A R R+ A +IA+TGSVGKT+TKEML   LS   +T+A + SYNNH
Sbjct: 80  LVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASYNNH 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+AP HL  F GIE I
Sbjct: 140 WGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGIEGI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKW 263
           A+ KA I +GLE  G   LN D +   +L++ +  +    +  FG         + L   
Sbjct: 200 AAEKAAIIDGLEPGGVAVLNADIAEAPILQSVAERV-THDVQWFGTGTGPIAPTYHLTAT 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               +++   V L       +H   +G H A N L  L  ++ L  D+  A+++LS++ P
Sbjct: 259 TLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLWSP 318

Query: 323 KEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             GRG R   +L   QG   L+D+SYNANP S+ AA++V    +P   GRRIA LGDM E
Sbjct: 319 VTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAV-LAATPCA-GRRIAYLGDMKE 376

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G   Q  H DLA++ ++  +  +   G  + AL  ALP      +  T D +   +   
Sbjct: 377 LGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPAEKRGGHYATSDDVRADLAGQ 436

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  GDVV+ K S S    ++++ + E
Sbjct: 437 IAAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
 gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
          Length = 463

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 180/442 (40%), Positives = 255/442 (57%), Gaps = 11/442 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           V+GISID+R++AP + F A+K    DGHDF+  A+ KGAG  +V+   + VA  GS   P
Sbjct: 23  VDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQALAKGAGAALVSHIPEGVAE-GS---P 77

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDDV  AL  L  A R R+KA ++A+TGSVGKT+TKEML   L+   +T+A + SYN
Sbjct: 78  LLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHAAVASYN 137

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH GVPLTLARMP D +F + ELGM+H GEI  L+   RPH+A++TT+A  HL  F  + 
Sbjct: 138 NHWGVPLTLARMPADTEFAVIELGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDVA 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  KA I EGLE  G   LN D     +L+A + A GI+T + FG+S +A ++L+  +
Sbjct: 198 GIAREKAAIIEGLEPGGVAVLNADLDETPVLRAVAEAAGIETRW-FGQSADA-YRLKDAE 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + +   + L G+ +      +G H A N    L  V  L  D+D A+  L+ + P +
Sbjct: 256 LDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLALGGDLDLALAGLAGWSPVK 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R+   L  G  T++D++YNANP SM AA++VL+       GRRIA L DM E+G  
Sbjct: 316 GRGARFTVDLPSGSVTVLDDAYNANPTSMAAALTVLAATP--ATGRRIAYLADMKELGPQ 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             + H  LA   +L  I  +   G  +  L DALP +    + ET       + + +  G
Sbjct: 374 EAALHAALAAHPALDRIDQIHCIGPLMKHLFDALPATKRGIWVETSAEAATALPTHISGG 433

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           D V+ K S S    R+++ + E
Sbjct: 434 DAVLAKGSLSMAVARVVDAIRE 455


>gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
 gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
          Length = 470

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 187/472 (39%), Positives = 267/472 (56%), Gaps = 21/472 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G +IG      VNGISID+RSIA  + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAEETAAATGGVAIG---DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+        S   P+  V+DV   L  L  A R R+ A +IA+TGSVGKT+TK
Sbjct: 59  GAGAALVSRRPEGV--SEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L    R
Sbjct: 117 EMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+AP HL  F GIE IA+ KA I +GLE  G   LN D +   +L+A +    
Sbjct: 177 PHVAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEPGGVAVLNADIAEAPILQAVA-GRA 235

Query: 244 IKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNML 297
            + +  FG  +      ++L       +++  EV L   QG  +++    +G H A N L
Sbjct: 236 AQDVQWFGTGQGPIAPSYRLVATTLRGDETEAEVTLPGGQGHRLQI--QSLGAHFAMNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKA 355
             L  ++ L  D+  A+++LS++ P  GRG R   +L   QG   L+D+SYNANP S+ A
Sbjct: 294 GALACLAALDLDLTKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAA 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++V    +P  EGRRIA LGDM E+G    + H  LA++ ++ ++  V   G  + AL 
Sbjct: 354 ALAV-LAATPC-EGRRIAYLGDMKELGPQEAALHAALADLPAMADLDAVHCIGPLMGALH 411

Query: 416 DALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ALP      HY+ + D +   +   +  GDVV+ K S S    ++++ + E
Sbjct: 412 AALPADKRRGHYASSAD-VLADLPGQIGAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 470

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 177/447 (39%), Positives = 252/447 (56%), Gaps = 14/447 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GISID+RSIA  + F A+K    DGH+F+  A++KGAG  +V+        S   P+ 
Sbjct: 23  VDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSRRPEGV--SEDAPLL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDDV   L  L  A R R+ A +IA+TGSVGKT+TKEML   LS   +T+A + SYNNH
Sbjct: 80  LVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASYNNH 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+AP HL  F GIE I
Sbjct: 140 WGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGIEGI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKW 263
           A+ KA I +GLE  G   LN D +   +L++ +  +    +  FG         + L   
Sbjct: 200 AAEKAAIMDGLEPGGVAILNADIAEAPILQSVAERV-TSDVQWFGTGTGPIAPTYHLTGT 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               +++   V L G     +H   +G H A N L  L  ++ L  D+  A+++LS++ P
Sbjct: 259 TLRGDETEAVVMLPGGQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLWSP 318

Query: 323 KEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             GRG R   +L   QG   L+D+SYNANP S+ AA++VL+       GRRIA LGDM E
Sbjct: 319 VTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGDMKE 376

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQS 439
           +G   Q  H DLA++ ++  +  +   G  + AL  ALP      HY+ + D +   +  
Sbjct: 377 LGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPADKRGGHYATSHD-VRADLAG 435

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +  GDVV+ K S S    ++++ + E
Sbjct: 436 HIAAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 485

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 180/469 (38%), Positives = 259/469 (55%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   D  +A  G ++G      V+GISID+RSI   + F A+K    DGH+F+  A+ K
Sbjct: 3   LWIAPDAAKATGGKAVG---DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQALAK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V    V    +   P+  V+DVL AL  L  A R R++A ++AITGSVGKT+TK
Sbjct: 59  GAGAALVT--HVPEGVAKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS+  +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  + R
Sbjct: 117 EMLRDVLSAQGRTHASVASYNNHWGVPLTLARMPQDTEFAVIEIGMNHPGEIAPLAKMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+++ITT+A AHL  F  I+ IA+ KA I  GLE  G   LN D     +LK+K+ A+ 
Sbjct: 177 PHVSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEPDGVAILNADIETAHVLKSKAEAMH 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  ++ FG S + ++ L         + +E  + G  +       G H A N L  L   
Sbjct: 237 INAVW-FGASAD-EYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGALASA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG----FFTLIDESYNANPASMKAAISV 359
             L AD+  A ++++ + P  GRG R   AL+         LID++YNANP S+ AA+ V
Sbjct: 295 EALGADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPTSLSAALDV 354

Query: 360 LS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+       I    +GRRIA LGDM E+G+   + H  +A +  + ++  +   G  +  
Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGDDENAMHEAVARLSCIEHLDMIHCVGPLMRG 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             +ALP +   H+ ET   +   +   L  GDVV+ K S S G  R+++
Sbjct: 415 CYEALPDAKRGHWFETSAEMASTVGRDLDAGDVVLAKGSLSMGLARVVD 463


>gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
 gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
          Length = 481

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 181/465 (38%), Positives = 262/465 (56%), Gaps = 22/465 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +  +A  G + G      V+G+SID+R++A  + F A+K    DGHDF+  A
Sbjct: 1   MSALWTAREAAEATGGTAQG---DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQA 56

Query: 61  VQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           + KGAG  +V+   + VA+      P+  V+DVL AL  L  AAR RS+A ++A+TGSVG
Sbjct: 57  LGKGAGAALVSHIPEGVAA----DAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEML   L+   +T+A   SYNNH GVPLTLARMP D  F + E+GM+H GEI  L
Sbjct: 113 KTSTKEMLRTVLARQGRTHAAEASYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEIAPL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L RPH+A++TT+A AHL  F  IE IA  KA IFEGLE  G   +N D     +L+  
Sbjct: 173 ARLARPHVAMVTTVAAAHLEAFENIEGIAREKAAIFEGLEPGGIAVVNADLDTTPILEEA 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +   G  +I  FG +K  D+ L   +   +++ +  ++QG++        G H A N L 
Sbjct: 233 ATRAG-ASIRRFG-TKARDYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMNGLG 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGF-FTLIDESYNANPASMK 354
            L  V+ L  D   A   L+++ P  GRG R    ++   QG+   LID+++NANP S++
Sbjct: 291 ALAAVAALGGDAGRAAPDLALWQPPAGRGTREDVMMDEARQGWVLDLIDDAFNANPTSLE 350

Query: 355 AAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AA+ VL+  +P         GRRIA+LGDM E+G    + H D+A    +  +  V   G
Sbjct: 351 AALEVLAAATPRDNVGRIARGRRIAILGDMLELGPNEIAVHTDIATWPLIAQLDTVHCVG 410

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             +  L  ALPR+    +++  + +   +   +  GDVV+VK S 
Sbjct: 411 PRMRHLWQALPRAQRGTWADMAEEMVAELPDLVDAGDVVLVKGSK 455


>gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus
           denitrificans PD1222]
 gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paracoccus denitrificans PD1222]
          Length = 461

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 253/463 (54%), Gaps = 20/463 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           LWT  D  +A  G +     + F V G+SID+R+I P + F A++    DGHDF+  A++
Sbjct: 3   LWTSQDAAEATGGRAT----RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALE 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V+   +    +   P+  V DVL AL  L  A R R +  ++AITGSVGKT+T
Sbjct: 58  KGACAALVSR--IPEGVAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTST 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM  +AL+   + +A   SYNNH GVPLTLARMP D DF I E+GM+H GEI  L  L 
Sbjct: 116 KEMARVALAGQGRVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLARLA 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHA 241
           RPH+A++TT+A AHL  F  IE IA  K  IF GL + GT  +  D    +LL+     A
Sbjct: 176 RPHVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRDCADDA 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I  +  FG+   A  +  K +     + +  ++ G++++ +    G H   N +  L 
Sbjct: 236 AAI--VIGFGQQGMA--RPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGMLA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +S   ADV  A K LS + P  GRG       +     LID++YN+NP S+ A ++ L+
Sbjct: 292 ALSAAGADVAEAAKHLSDWRPPLGRG----AVEDLDGIRLIDDAYNSNPTSLSAGLATLA 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +++    GRR+A+LGDM E+G    + H  +A   ++  +  V  +G  + AL +ALP+ 
Sbjct: 348 RLT---GGRRVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQG 404

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               ++ET   L   +   +  GD+V+VK S S     +++ L
Sbjct: 405 RRGMHAETAAELAGKVGELVASGDIVLVKGSKSSKVSTVVDAL 447


>gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
 gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
          Length = 486

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 174/464 (37%), Positives = 237/464 (51%), Gaps = 24/464 (5%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q+I   + G     F  +G+ +DSR + P + F A+KG   DGH FI  A  KGA   + 
Sbjct: 27  QSIASATGGTASHAFQASGVEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFAKGAVAAIT 86

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +         +  P   V D   AL+ LA AAR R  A  IA+TGSVGKT  KE +  +L
Sbjct: 87  DR-------PVDFPHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASL 139

Query: 131 SSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +  A   + SYNNH+GVPL+LARMP    FG+FE+GM+H GEI  L+  VRPH+A+
Sbjct: 140 DRASRGAAHRSVRSYNNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAPLSDHVRPHVAL 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           ITTIAPAH+ N   +E IA  KA+IF GL   GT  +  D  +   +   + ALG+  + 
Sbjct: 200 ITTIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAKALGVNVV- 258

Query: 249 SFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +FG+S++AD + L      +  S +   L    +       G H   N L  +  V    
Sbjct: 259 TFGRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAG 318

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D+ +A  AL+     +GRG R+      G   L+DESYNANPASM+A +  L Q   H 
Sbjct: 319 GDLASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAH- 377

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------- 420
             RR+AVLG M E+G+ +  FH  +AE L+   I HV L G  + AL   L R       
Sbjct: 378 --RRVAVLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELGRMPANSLG 435

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                       + +    +  L  GD V+VK SNS G  RL+ 
Sbjct: 436 FAPSFAQCDSPAEAIAALEEYGLTHGDAVLVKGSNSVGLGRLVQ 479


>gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
 gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
          Length = 464

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 172/454 (37%), Positives = 243/454 (53%), Gaps = 12/454 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWTF +L +A  G   G+      +GI+ DSR++ P + F A++G   DGHDF+  A   
Sbjct: 9   LWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFAS 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTT 122
           GA L V    +      L +P     DV  AL  +AV AR R+  T    +TGSVGKT+ 
Sbjct: 68  GAVLAVTRRPIEGG-ACLLVP-----DVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +M+   L    + ++ I S+NNHIGVPLTLARMP D +  +FE+GM+H  EI  L+  V
Sbjct: 122 TQMVMQGLQQAGRAHSAIKSFNNHIGVPLTLARMPADTERAVFEIGMNHADEITPLSEFV 181

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            PH  VITT+   H  NF  G   +A+AKAEIF+GL   G   LN D+ +F+ L  K+  
Sbjct: 182 APHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLAILNADNRWFDHLSTKARG 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G   + +FG++   D QL + +   +++ +  +  G+ +       G H A N L  L 
Sbjct: 242 SG-ALVAAFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALL 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L  D+DT++ AL  F   EGRG+        G  T+IDESYNANP SM A ++ L 
Sbjct: 301 MLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSMTATLASLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q      GR++AVL DM E+G      H  LAE +    +  V+L+G  +  L DALP  
Sbjct: 361 QRET--AGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYLAGPLMKHLWDALPSG 418

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +   Y+ T   L   +   L  GDVV++K SN  
Sbjct: 419 LKGGYAATAADLLAAVTEGLQAGDVVMLKGSNGS 452


>gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acidiphilium cryptum JF-5]
 gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium cryptum JF-5]
          Length = 451

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 245/452 (54%), Gaps = 17/452 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  DL  A  G    +  +    G+SIDSR+IAP E F A+     DGHDF+  A
Sbjct: 1   MSGLWSARDLAVATNG--TWLRGEADATGVSIDSRTIAPGELFVALADAR-DGHDFVPDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+V  D+ A       P   V+DV  AL +L    R RS+A ++A+TGSVGK+
Sbjct: 58  EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS+   T+A   S+NNHIGVPLTLAR+P + DF + E+GM+H GEI  L+ 
Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+ VIT I  AHL     +E IA  KAE+  G+   G   L     F   L  ++ 
Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPR-GPFLSRLARRAR 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G++ + SFG    A+ +L + +  ++   +   +    +       G HMA N +  L
Sbjct: 231 D-GVRVV-SFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L  D   A  AL  F P  GRG R R  ++    TL+DESYNA+  S++AA+ VL
Sbjct: 289 AAAAALGLDPAQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G+ +   H DLA+ +S      V+  G H+  + D LP 
Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLADAVSGV-ADLVFACGPHMRVMFDELPE 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                ++     L   ++++L  GDVV+VK S
Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGS 435


>gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 489

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 249/479 (51%), Gaps = 34/479 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  ++  A  G +        V+G+ IDSR +   + FFA+KG + DGH ++  A  +
Sbjct: 22  LWTSEEIAAATGGRASAPF---AVSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFGR 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV     A  G    P   V +   AL  L  AAR R  A II +TGS GKT  K
Sbjct: 79  GAAGAVVEH---ACFG----PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGVK 131

Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E L  AL  +S  + +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GE+  LT L
Sbjct: 132 EALYAALDRASRGRAHRSVKSYNNHVGVPLSLARMPARTSFGVFEMGMNHAGELAALTRL 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A++TTIAPAH+ +F+G E IA AKAEIFEGLE  G   +  D+  FE L+AK+  
Sbjct: 192 VRPHVAIVTTIAPAHIGHFAGEEAIADAKAEIFEGLEPGGVAIIPADNRHFEHLRAKA-T 250

Query: 242 LGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L  + + SFG +K+A  + L         + +   L G+ +       G H   N L  +
Sbjct: 251 LHAERVISFGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAVM 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAA 356
             V  +  D+  A  AL+      GRG R+    + G  +    LIDESYNANPASM   
Sbjct: 311 AAVEAIGGDLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAVT 370

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L Q       RR+A+LG M E+G     +H +LA  ++   +  + L G  + AL D
Sbjct: 371 LRQLGQTP---AARRVAILGAMRELGADEARYHAELAGPVAEGKVDRLILVGGEMTALAD 427

Query: 417 ALPRSIHVHYSETMDGLFLFIQS-----------SLVDGDVVVVKSSNSCGFYRLINLL 464
           AL +S     +  +D     +Q+            +  GD ++VK SNS G   L+  L
Sbjct: 428 ALGKSGSAALAGAID--VAHVQTAAEAAECLAADGVRGGDAILVKGSNSVGLGALVRSL 484


>gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 477

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 170/473 (35%), Positives = 250/473 (52%), Gaps = 20/473 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G   G       NG+SID+R++ P + F A+K    DGH+F+  A+  
Sbjct: 3   LWTATEAAEATGGRVQG---DWACNGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDS 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GAG  +V T +   +G    P+  V+DV  AL  L  A  ARL  +A + A+TGSVGKT+
Sbjct: 59  GAGAALV-THVPEGVGE-DAPLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTS 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML        K +A + SYNNH GVPLTLARMP D D+ + E+GM+H GEI  L   
Sbjct: 117 TKEMLLAIFGDQGKAHASVDSYNNHWGVPLTLARMPRDTDYAVIEIGMNHPGEIAPLAKQ 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +PH A++T +A  HL  F  +  IA  KA IF+G+E  G   +N D    +++  K+  
Sbjct: 177 AQPHAAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPGGVAVINADHDHSDIVLDKALE 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++   +FG+ K   + L   K   E +  + ++ G  +       G H A N L  L 
Sbjct: 237 RGLRET-TFGR-KGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----NQGFFTLIDESYNANPASMKAAI 357
           +   L AD   A+++L  + P  GRG R +  L    N     LID+SYNANP SM AA+
Sbjct: 295 VAEALGADRALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMAAAL 354

Query: 358 SVLS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+       I    +GRRIA +GDM E+G  + + H  LA++ +   +  V   G  +
Sbjct: 355 EVLAASEVTHDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVGPLM 414

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            A  D LP      ++ET + +   +++ L  GDVV++K S S     +++ +
Sbjct: 415 KAFYDNLPEHQRGDWTETAEEMLQGLRARLDSGDVVLIKGSLSMKLGSIVDAI 467


>gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli GR56]
          Length = 247

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 180/248 (72%), Gaps = 1/248 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+  EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTDDMIAAMAGRPFGTLPEG-ITGISIDSRSISSGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGKLGLASRERSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQVLSPSGKVHASVASFNNHWGVPLTLARMPGDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIY 248
           +LGI+ I+
Sbjct: 240 SLGIEHIH 247


>gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
 gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
          Length = 476

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 238/442 (53%), Gaps = 15/442 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+    G+SID+R++   + F A+     DGHDF+  A+ KGA   +V+   V       
Sbjct: 19  PEWQATGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVS--HVPQGVPED 75

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P+  V DV  AL  L  A R R    ++A+TGSVGKT+TKEML   LS   KT+A + S
Sbjct: 76  APLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVAS 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNH GVPLTLARMP D +F + E+GM+H GEI  L  +  PH+A+ITT+A AHL  F  
Sbjct: 136 YNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALITTVAAAHLEAFED 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           I  IA  KA IFEG+   G   LN D     +L AK+    ++ I +FG+    DF+L +
Sbjct: 196 ITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRLRDI-TFGE-HGYDFKLMR 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + + +  Q+    +    +  G H A N L  + +++ L  DV  A+ +L  + P
Sbjct: 254 ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVALALGSLGRWTP 313

Query: 323 KEGRGKRYRCALN----QGFFTLIDESYNANPASM------KAAISVLSQISPHGEGRRI 372
            +GRG+R R  L+    + F  LID+SYNANP SM       AA  V + I    +GRRI
Sbjct: 314 YKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAKVTNDIGRVSKGRRI 373

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           A LGDM E+G    + H  LA + +   I  +   G  + AL DALP      + ET + 
Sbjct: 374 AYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDALPEPQRGTWFETAEE 433

Query: 433 LFLFIQSSLVDGDVVVVKSSNS 454
               +++ +  GDVV+ K S S
Sbjct: 434 AATRVKTHIDSGDVVLAKGSLS 455


>gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
          Length = 476

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 176/472 (37%), Positives = 244/472 (51%), Gaps = 19/472 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G + G        G+SID+R++   + F A+     DGH+F+  A++K
Sbjct: 3   LWTAAEAARATGGEARG---DWTALGVSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   V        P+  V DVL  L  L  AAR R    I+A+TGSVGKT+TK
Sbjct: 59  GAAAALVSR--VPENVPADAPLLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   +   ++ +A   SYNNH GVPLTLARMP D + GI E+GM+H GEI  L  L R
Sbjct: 117 EMLRTVIGGQRRVHAAEASYNNHWGVPLTLARMPRDTEVGIIEIGMNHPGEIAPLARLAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+  AHL  F  I+ IA  KA IF GL   G   +N D     +L+A + A G
Sbjct: 177 PHVAMITTVGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAEATG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +FG++     +L K       +  E ++            G H A N L  L +V
Sbjct: 237 AH-ILTFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVV 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             L  D   A   LS + P  GRG R R  L+    +  F LID+++NANP SM AA+ V
Sbjct: 296 RALGLDRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAALEV 355

Query: 360 LSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           ++   P      H  GRRIA+LG+M E+G    + H  LA++ +   +  V   G  + A
Sbjct: 356 IAAARPKDNVGRHARGRRIAILGEMLELGPDELALHAGLADLPATAELDVVHCVGKRMRA 415

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464
           L +ALP      ++E    L     + LVD GDVV+VK S       +++ L
Sbjct: 416 LYEALPPGNRGRHTEKASDLAAK-AARLVDAGDVVLVKGSKGSKVSEVVDAL 466


>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
 gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
          Length = 458

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 241/471 (51%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++ QA  G  +   P   V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MTDLWTSEEIAQATGG--VASAPFA-VSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+        +++ P   V D   AL  L   +R R +  ++ +TGSVGKT
Sbjct: 58  FGQGAAGAIVSQ-------TIAQPHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKT 110

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL  +   + +  + SYNNH+GVPL+L+RMP +  FG+FE+GM+H GE+  L
Sbjct: 111 GTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--K 236
           T  VRPH+A++T IAPAH+  F   E+IA AKAEIFEGLE  GT  + YD      L  K
Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A+ HA     I +FG    AD + R+        + +   L G  +       G H   N
Sbjct: 231 AEKHA---ARILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSN 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L  V  L  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM A
Sbjct: 288 ALAVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMAA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
               L Q+      RRIAVLG M E+G+ S+  H  L E L+   + +  L G  +  L 
Sbjct: 348 ---TLKQLGREQADRRIAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLVGEEMDPLA 404

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL   +   +          I++ +  GD ++VK SN  G  RL+  L E
Sbjct: 405 QALGGVMAFDHVPDAARAIDLIRNEMRAGDAILVKGSNGIGLSRLVAALQE 455


>gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 459

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 246/454 (54%), Gaps = 21/454 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ LWT   LL A  G         F  +G+SID+R++ P + F A++G + DGHD    
Sbjct: 1   MSALWTREALLAATGGR----FSMPFDAHGVSIDTRTLEPADLFVALQGDNGDGHDHAEA 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA  V+ + D          P   V+D + AL  L   AR R   T+ A+TGSVGK
Sbjct: 57  ALARGAAGVLAHRDGPG-------PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGK 109

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEML  AL+     +A   SYNNH GVPLTLAR+P      + E+GM+H GEI  L 
Sbjct: 110 TTTKEMLRTALAPFGPVHAAYASYNNHWGVPLTLARLPESARSCVVEIGMNHAGEIAPLA 169

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RPH+A+ITT+  +H+ +   IE IA  KA +F GL   G   +  D      L A++
Sbjct: 170 ALARPHVAIITTVERSHIGHLGSIEAIADEKAALFSGLAADGVAIMPADSPMLPRLMAQA 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + +FG   N+  +L++ +  ++ S +++ ++G+S+       G HMA N L  
Sbjct: 230 ---APHRVMTFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V     D   A  AL  FH   GRG +   ALN G   L+DESYNA+ AS++AA+ V
Sbjct: 287 LSAVDAAGFDPHPAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGFHVLALKDAL 418
           L +++P    RRI VLGD+ E+G+ + + H  LA+ + +  +++  +  G  +  L DAL
Sbjct: 347 L-RLTP--ASRRIVVLGDILELGDQAVAEHAGLAQDIAACADLA--FTCGPMMRHLFDAL 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           P S+   +      L   + +++ DGD ++VK S
Sbjct: 402 PASVRGAHEADSASLAPVVSAAIRDGDTILVKGS 435


>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
 gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
          Length = 461

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 188/477 (39%), Positives = 264/477 (55%), Gaps = 23/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +L  A  G  +G  P   V GISID+RS+AP + F A+KG + DGH  I  A
Sbjct: 1   MSLLWTREELETATGGTFLGNAPVS-VTGISIDTRSLAPGDLFIALKGDNSDGHAHIATA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           ++KGA  V+ +     S   L+ P +  V D +  L KLA+AAR R K  ++A+TGSVGK
Sbjct: 60  LEKGAAAVLAH-----SAEGLTDPRILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEML + L+    T+A   SYNNH GVPLTLAR+P +  F I E+GM+H GEI  L 
Sbjct: 115 TTTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREAAFCISEIGMNHPGEILPLA 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELL 235
            +V+P +AVITTI  AHL +   ++ IA+ KA I   L   G I +  DD+    FF   
Sbjct: 175 KMVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITAL-PAGGIAIMPDDAHGTPFFTAA 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             K+ A+    ++  G +  +   L   +  ++ S  +V + GK+  V     G H+A+N
Sbjct: 234 AVKAQAV----LWPCGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            ++ L   + L ADV  A  AL+ F P +GRG   + A   G  TL+DESYNA+ AS++A
Sbjct: 290 AVVALAACAALGADVAKAAAALAAFRPGKGRGALTKIA--GGAITLLDESYNASAASIRA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+ V+  I      RRIAVLGDM E+GE S S H       +      V+  G ++  L 
Sbjct: 348 ALDVVRHIP---ATRRIAVLGDMRELGEFSISEH-QALAAPTASAADLVFCCGSYMKTLF 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           DALP S    ++E+   L   + ++L  GD V+VK S       +I   L   PA++
Sbjct: 404 DALPPSKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIA-ALNALPAVE 459


>gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
          Length = 476

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 173/461 (37%), Positives = 247/461 (53%), Gaps = 18/461 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G +     Q    G+SID+R++   + F A+     DGHDF+  A+ K
Sbjct: 3   LWTSAEAAEATGGTTTS---QWNATGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQALDK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   V        P+  V+DV GAL  L  A R R    ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVS--HVPPGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   + +A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  +  
Sbjct: 117 EMLLAMLSDQGRAHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAA 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+A AHL  F  I  IA  KA IFEG+   G   LN D     +L AK+    
Sbjct: 177 PHVALITTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQDCR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ I +FG+    DF+L +     + + +  ++    +    +  G H A N L  + ++
Sbjct: 237 LRDI-TFGE-HGYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVM 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
           + L  DV  A+ +L  + P +GRG+R R  L+    + F  LID+SYNANP SM AA+ V
Sbjct: 295 AALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEV 354

Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L      + I    +GRRIA LGDM E+G    + H  LA + +   I  +   G  + A
Sbjct: 355 LAAAEVTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRA 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L DALP      + E  +     +++ +  GDVV+ K S S
Sbjct: 415 LYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVLAKGSLS 455


>gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
 gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
          Length = 451

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 174/452 (38%), Positives = 244/452 (53%), Gaps = 17/452 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  DL  A  G    +  +    G+SIDSR+ AP E F A+     DGHDF+  A
Sbjct: 1   MSGLWSARDLAVATNG--TWLRGEADATGVSIDSRTTAPGELFVALADAR-DGHDFVPDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+V  D+ A       P   V+DV  AL +L    R RS+A ++A+TGSVGK+
Sbjct: 58  EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS+   T+A   S+NNHIGVPLTLAR+P + DF + E+GM+H GEI  L+ 
Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+ VIT I  AHL     +E IA  KAE+  G+   G   L     F   L  ++ 
Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPR-GPFLSRLARRAR 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G++ + SFG    A+ +L + +  ++   +   +    +       G HMA N +  L
Sbjct: 231 D-GVRVV-SFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L  D   A  AL  F P  GRG R R  ++    TL+DESYNA+  S++AA+ VL
Sbjct: 289 AAAAALGLDPVQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G+ +   H DLA+ +S      V+  G H+  + D LP 
Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLADAVSGV-ADLVFACGPHMRVMFDELPE 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                ++     L   ++++L  GDVV+VK S
Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGS 435


>gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
 gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 498

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 183/471 (38%), Positives = 248/471 (52%), Gaps = 26/471 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+  ++  A  G + G        G+ +DSR + P + F A+KG   DGH F+  A   
Sbjct: 36  LWSAQEIAAATGGTASGDFQ---CAGVEMDSRDVRPGDLFVALKGESMDGHRFVEKAFAA 92

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V          +  P   V+D   AL  LA AAR R+ A  I +TGSVGKT  K
Sbjct: 93  GAAAALVER-------PVDWPHVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGVK 145

Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E +  AL  SS  + +  + SYNNH+GVPL+LARMP    +G+FE+GM+H GEI  LT  
Sbjct: 146 EAIFAALEKSSRGQAHRSVRSYNNHVGVPLSLARMPARSRYGVFEMGMNHAGEIAGLTDH 205

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+AVITTIAPAH+ N   IE IA AKAEIFEGL K GT  +  D   +E L+A +  
Sbjct: 206 VRPHVAVITTIAPAHIENLGSIEAIADAKAEIFEGLVKGGTAVIPADSEQYEQLRASAEK 265

Query: 242 LGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            G+ TI SFG++ +AD + L      +  S +  Q++   +       G H   N L  L
Sbjct: 266 RGV-TIVSFGRADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAVL 324

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     D+  A  AL+     +GRG R+  A+  G   LIDESYNANPASM+A +  L
Sbjct: 325 AAVQAAGGDLGAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASMRATLRQL 384

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q       RRIAVLG M E+G+    FH  LAE +   ++ +  L G  +LAL   L +
Sbjct: 385 GQTPAT---RRIAVLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGDEMLALARHLGK 441

Query: 421 S---------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +            H     + +    +  L  GD ++VK SNS G  +L++
Sbjct: 442 AGSGTLGKTPAFAHCDGPAEAIAALQEYGLTAGDAILVKGSNSIGLGKLVD 492


>gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
 gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
          Length = 477

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 173/474 (36%), Positives = 254/474 (53%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  GH+     +    G+SID+R+IA  + F A+K    DGH+F+  A
Sbjct: 1   MTALWTSADAAAATGGHT---TQEWDAQGVSIDTRTIAQGDLFVALKDVR-DGHEFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V T   A + +   P+  V DVL AL  L  AAR R+ A I AITGSVGKT
Sbjct: 57  LDQGAAAALV-THRPADVPA-DAPLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L    K +A   SYNNH GVPLTLARMP D D+ + E+GMS+ GEI  L+ 
Sbjct: 115 STKEMLRAVLEKQGKCHAAEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEITPLSQ 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +PH+A++TT+A AHL++F  +  IA  KA I +GLE  G   LN D     +L+  + 
Sbjct: 175 MTQPHVAMLTTVAAAHLASFDNLAGIAVEKASIMDGLEPGGVAVLNGDIETSGILQDHAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG + +  FG++   D+ ++  +   + + +     G++        G H A N +  L
Sbjct: 235 KLGARQVL-FGETA-PDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKR----YRCALNQGFFTLIDESYNANPASMKAA 356
            +   L AD   A   +  + P  GRG R       A +     L+D+++NANP S+ AA
Sbjct: 293 AVAEALGADPVAAALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAA 352

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+  +P        +GRR+A+LGDM E+G+  Q  H ++A    L ++  V  +G  
Sbjct: 353 LEVLAAATPTDNVGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPL 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +L L  ALP     H++ET   L L     +  GDVV+VK S       +++ +
Sbjct: 413 MLHLWQALPEEQRGHWAETAAELVLQAPRLVDAGDVVLVKGSKGSKVSLVVDAI 466


>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
 gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
          Length = 472

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 236/468 (50%), Gaps = 25/468 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  D+  A+ G   G       +G++ DSR + P + F A+KG   DGH F+  A  
Sbjct: 4   PLWTAFDIAAAVDGEVYGDF---RTDGVTFDSREVGPGDLFIALKGETTDGHRFLDKAFA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V+        +   P   V D + AL+ L  AAR R    +I +TGSVGKT T
Sbjct: 61  AGAAGAIVSD-------ACDGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGT 113

Query: 123 KEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE L   L      + +  + SYNNH GVPL+LARMP D   G+FE+GM+H GE+  LT 
Sbjct: 114 KEALYACLDRALPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELAALTR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRPH+A++T IAPAH + F+   +IA AK EIF+GL+  G   + YD    + L   AK
Sbjct: 174 LVRPHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIAAAK 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            HA     I +FG  + AD   +        + + + L    +       G H   N + 
Sbjct: 234 PHA---ARILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-----LIDESYNANPASM 353
            +  V  +  D+  A  A +      GRG+R   A+  G        LIDESYNANPASM
Sbjct: 291 VIAAVWAVGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASM 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            A I +L +       RR+AVLG+M E+G  S  +H DLA  L    +    L G  + A
Sbjct: 351 AATIKMLGR---ERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMAA 407

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           L +AL   I   +    D     I++ +  GD +++K SN+ G  RL+
Sbjct: 408 LANALEGRIEFEHVPDADAAIESIEAKIAPGDAILIKGSNAIGLSRLV 455


>gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
          Length = 480

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 187/480 (38%), Positives = 256/480 (53%), Gaps = 35/480 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G +         +G+SID+R++AP + F A+K    DGH+F+  A++K
Sbjct: 3   LWTAAEAARATGGDN---RTDWTADGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALEK 58

Query: 64  GAG--LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA   LV    + VA+      P+  V DVL AL  L  AAR R+ A + AITGSVGKT+
Sbjct: 59  GAAAALVTHRPEGVAA----DAPLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +KEML  AL    +T+A   SYNNH GVPLTLARMP D ++ I E+GM+H GEI  L  L
Sbjct: 115 SKEMLRAALERQGRTHAAEASYNNHWGVPLTLARMPADTEYAIVEIGMNHPGEIAPLARL 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPH+A++T +APAHL  F  IE IA  KA IFEGLE  GT  +N D     +L+A + A
Sbjct: 175 ARPHVAMVTIVAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEA 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWK---QCSEQS---W-MEVQLQGKSMEVVHHGIGYHMAQ 294
                I SFG       +L   K    C+  S   W  EV L+  +        G H A 
Sbjct: 235 A-GAEIVSFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATE-------GAHFAV 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANP 350
           N L  L   + L AD   A+  L+ + P  GRG R    L+ G       LID+++NANP
Sbjct: 287 NALGCLATAAALGADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANP 346

Query: 351 ASMKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           AS+ AA+ VL+   P       G+GRRIA+LGDM E+G  +   H  +A+  ++ ++  V
Sbjct: 347 ASLAAALEVLAAARPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLV 406

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G  +  L  ALP      + E  + L       +  GDVV+VK S      R+++ +
Sbjct: 407 HCVGPLMRELHRALPDGRRGRWVENAEDLAAKAARLVDPGDVVLVKGSKGSRVSRVVDAI 466


>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
 gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
          Length = 449

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 245/459 (53%), Gaps = 14/459 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L +A+   +I I      N +  +S+ +   + F  ++G + DGHD++L A+ K
Sbjct: 2   IWNSETLSKAL---AITISNSINCNEVQFNSKDVKKGDLFIVLQG-NRDGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  +       +  VDD    L K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIVSKQVEINDKD---KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L I L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKILLQYDSLVFASRGNFNNRLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIFE   K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADINCYNKIVSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  +Y+FG S N   QL  ++   EQ  ++ ++  KS+E+    I  H A+N    L I+
Sbjct: 235 INRVYNFGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANIPPNKGRGE----IINIQNSRIICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H +L   +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPPKIV 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             Y + +D L   I       +++++K S      ++++
Sbjct: 408 KKYFKNVDELITHITDLFESNELILIKGSRGIKLDKIVD 446


>gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. HTCC2601]
          Length = 477

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 178/477 (37%), Positives = 256/477 (53%), Gaps = 30/477 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D   A  G   G       NG+SID+R+IA  + F A+K    DGHDF+  A++ 
Sbjct: 3   LWTAKDAAAATGGQVAG---DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQALEN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+  +   +   ++ +  VDDV   L  L  AAR R++A ++A+TGSVGKT+TK
Sbjct: 59  GASAALVSR-IPEGVDPANLLI--VDDVQAGLEALGRAARARTRARVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML + L +  + +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ + R
Sbjct: 116 DMLRVVLGAQSRVHAAEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSDMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +APAHL+ F  +E IA  KA IFEGLE  GT  +N D     LL A   A  
Sbjct: 176 PDVAMITIVAPAHLAAFESLEGIAREKAAIFEGLEPGGTAVVNGDLPVSPLLVAAGEARA 235

Query: 244 IKTIYSFGKSKNADFQLR------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              I +FG+++    ++              ++W    L   S+       G H A N +
Sbjct: 236 AHVI-TFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVP------GRHFAVNGM 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASM 353
             L +   L  D   A+ AL  +    GRG+R    L+         LID++YNANPAS+
Sbjct: 289 GVLAVAHALGLDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANPASL 348

Query: 354 KAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            A++ VL+             GRRIA LGDM E+G    + H  +A++ ++  I  V   
Sbjct: 349 AASLEVLAGAKTRDGVGRVSHGRRIAYLGDMKELGATEAALHRAVADLPAMERIDLVHCV 408

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G  +  L  ALP+    H++ET DG+   ++  +  GDVV+VK S S G  R+++ +
Sbjct: 409 GPLMRTLWQALPQHKRGHWTETADGMAARVRHDMDAGDVVLVKGSLSTGLGRVVDAI 465


>gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 481

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 256/474 (54%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PLWT  +   A  G +     + F   G+SIDSR++ P + F A+K    DGH F+  
Sbjct: 1   MTPLWTSDEASAATGGRAT----RAFSATGVSIDSRTLRPGDLFVALKD-QRDGHAFVAQ 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA   +V+   +    +   P+  V DVL AL  L  AAR RS+A +I +TGSVGK
Sbjct: 56  ALANGAAAALVS--RIPDGLTDGAPLLLVPDVLEALAALGRAARARSRARVIGVTGSVGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEML  AL      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L 
Sbjct: 114 TSTKEMLRAALRGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLA 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RPH+A+ITT+APAHL  F  +  IA  KA I EGLE  G   L  D     +L A++
Sbjct: 174 RLARPHLALITTVAPAHLEAFDSMTAIAEEKAAILEGLEPGGLAILPADLEVTPVLAARA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            ALG+  + +FG+S  AD++L   +   E +        ++        G H A N L  
Sbjct: 234 SALGVPAM-TFGQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAV 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356
           L     L  D+      L ++ P  GRG R R AL   ++  F LID+++NANPAS+ A+
Sbjct: 293 LAAAEALGLDLTITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAAS 352

Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + +L+ ++P         GRRIA+LGDM E+G    + H  +A+  +L  I+ V   G  
Sbjct: 353 LELLAAMAPTDGVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466


>gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
 gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
          Length = 459

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 174/467 (37%), Positives = 244/467 (52%), Gaps = 21/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  ++  A  G + G      V+G++ DSR + P + F A+ G   DGH F+  A  +
Sbjct: 3   LWTADEIATATGGQASGAFA---VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQAFAQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ D          P   V D   AL  L  A+R R++ATII +TGSVGKT+ K
Sbjct: 60  GAAGALVSADT-------PHPHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKTSAK 112

Query: 124 EMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E L  AL      + +  + SYNNH GVPL+LARMP DV  G+FE+GM+H GE+  LT +
Sbjct: 113 EALYAALERGWHGRVHRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSALTAM 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA++T IAPAH   F     IA AK EIF+GLE  GT  + YD    + L A +  
Sbjct: 173 VRPHIAIVTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGTAIIPYDSPHRDRLIAAAKP 232

Query: 242 LGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + I +FG    AD   +   +  +  S++  +L  + +       G H   N L  L
Sbjct: 233 YAAR-IVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALAVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     D+  A  AL+      GRG R+R A       +IDESYNANPASM+A ++VL
Sbjct: 292 AAVDAAGGDLGLAGLALAELGGLAGRGARFRAANGA---LIIDESYNANPASMRATLAVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++  P   GR +AVLG+M E+G+ S  +H  LAE +   ++  V L G  +  L  AL  
Sbjct: 349 AE-EP---GRHVAVLGEMRELGDDSADYHAGLAEPILAAHVEKVLLVGESMAPLAAALEG 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +          + S +   DVV++K SN  G  R++  L +E
Sbjct: 405 RVDFVHVTDAKAAQAALASIIAPNDVVLIKGSNGVGLARVVAGLGQE 451


>gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
 gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
          Length = 476

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 178/469 (37%), Positives = 249/469 (53%), Gaps = 35/469 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+  +   A  G   G      V+G+SID+R++   + F A++    DGH+F+  A+ K
Sbjct: 3   LWSAQEAAAATGGRVTG---DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQALAK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V + +   +G    P+  V+DV   L  L  A R RS+A ++A+TGSVGKT+TK
Sbjct: 59  GAAAALV-SHVPEGVGG-DAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L    +T+A   SYNNH GVPLTLARMPVD  F + E+GM+H GEI  L  + R
Sbjct: 117 EMLRDVLRHQGRTHAAEASYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEIAPLARMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HA 241
           PH+AVITT+A AHL  F  IE IA  KA IFEGLE  G   +N D +   +L+A++  HA
Sbjct: 177 PHVAVITTVAAAHLEAFEDIEGIAREKASIFEGLEPGGVAVINADIATAPILRAEAVRHA 236

Query: 242 LGIKTIYSFGKSKNADFQL------RKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294
                I SFG ++ A  +L       +      ++W       +S  V   G+ G H A 
Sbjct: 237 ---ARILSFGTARGAHHRLLNVELHDRVTVGHARAW-------RSPLVYKVGVPGRHFAM 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGF-FTLIDESYNANP 350
           N L  L +V +L  D   A+  L+ + P  GRG R    L+    G    LID+++NANP
Sbjct: 287 NALAVLAVVQVLGCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANP 346

Query: 351 ASMKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            SM AA+ VL+   P         GRRIA+LGDM E+G    + H  LA++  +  I  +
Sbjct: 347 TSMAAALEVLAAAQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEI 406

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              G  + AL + L       ++ T + L       +  GDVV+VK S 
Sbjct: 407 HCVGPRMRALWEVLSEGRQGRWAATAEDLAAQAHRLIDAGDVVLVKGSK 455


>gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
          Length = 476

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 178/468 (38%), Positives = 258/468 (55%), Gaps = 28/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  LWT H  + A QG     V QG     G+SID+R++ P + F A+K    DGHDF+ 
Sbjct: 1   MTALWTAHQAVAATQG-----VTQGDWVATGVSIDTRTLQPGDLFVALKDVR-DGHDFVA 54

Query: 59  HAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            A++KGA   +V+   D VAS      P+  V DVL  L  L +AAR RS A I AITGS
Sbjct: 55  MALEKGAAAALVSHRPDGVAS----DAPLLVVPDVLKGLEALGIAARARSTARIAAITGS 110

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKT+TKEML   LS   K +A   SYNNH GVPLTLARMP D DF + E+GMS+ GEI 
Sbjct: 111 VGKTSTKEMLRTVLSRQGKCHAAEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEIA 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+ + RPH+A++TT+A AHL++F  +  IA+ KA I +GLE  G   LN D +   +L+
Sbjct: 171 PLSRMARPHVAMVTTVAAAHLASFESLAGIAAEKATIVDGLEPGGIAVLNGDVATTAILQ 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++  +G + +  FG++  A +++   +   + + +     G          G H   N 
Sbjct: 231 DRAGDIGAQIVL-FGETAGA-WRISDLRISRDVTVIGATSPGHDYLFKLSVPGRHFGLNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFT--LIDESYNANPAS 352
           +  L +V+ L AD   A   L+++ P  GRG R   +  L   F T  L+D+++NANP S
Sbjct: 289 VGVLAVVAALGADPVAASLDLALWVPPAGRGTREIIQLDLANEFETIDLMDDAFNANPTS 348

Query: 353 MKAAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           + A++ V++   P        +GR+IA+LGDM E+G    + H  +A+   L  +  +  
Sbjct: 349 LAASLEVIAAGQPQDGVGRIVKGRKIAILGDMLELGTDEVAMHAAMAQNPHLQQLDLIHC 408

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSN 453
           +G  +  L +ALP+     ++ T         + LVD GDVV+VK S 
Sbjct: 409 AGPLMRHLWEALPQGKRGQWAATAA-ELAAQATRLVDTGDVVLVKGSK 455


>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 461

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 186/479 (38%), Positives = 261/479 (54%), Gaps = 27/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +L  A  G  +G      V GISID+R++   + F A+KG + DGH  I  A
Sbjct: 1   MSLLWTREELETATGGTFLGNTSVS-VTGISIDTRTLTHGDLFIALKGDNSDGHAHITTA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA  ++ ++    + G     +  V D +  L KLA AAR R K  ++A+TGSVGKT
Sbjct: 60  LEKGAAAILAHS----AEGFTDPRILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L+    T+A   SYNNH GVPLTLAR+P +  F I E+GM+H GEI  L  
Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEILPLAK 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLK 236
           +V+P +AVITTI  AHL +   ++ IA  KA I   L K G I +  DD+    FF    
Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPK-GGIAIVPDDAHGTEFFTAEA 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K+ A+    +++ G + ++   L      ++ S  +V +QGK+  V     G H+A+N 
Sbjct: 235 EKAQAV----LWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ---GFFTLIDESYNANPASM 353
           +  L   + L ADV  A  AL+ F P +GRG     AL Q   G  TL+DESYNA+ AS+
Sbjct: 291 VAALAACAALGADVAKAANALADFRPGKGRG-----ALTQIVGGAITLLDESYNASAASI 345

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA+ VL  I      RRIAVLGDM E+GE S S H       +      V+  G ++  
Sbjct: 346 RAALDVLRHIP---ATRRIAVLGDMRELGEFSISEH-QALAAPAASAADLVFCCGSYMKT 401

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           L DALP S    ++E+   L   + ++L  GD V+VK S       +I   L   PA++
Sbjct: 402 LFDALPPSKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIA-ALNALPAVE 459


>gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
 gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
          Length = 463

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 241/456 (52%), Gaps = 19/456 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  LW   DLL A  GH            G+SID+R++ P + F A++G + +GHD +  
Sbjct: 1   MTLLWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHVAR 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA  VV + D           +  VDD L A+  +A  AR R    ++A+TGSVGK
Sbjct: 61  ALEAGAACVVAHEDC-----GTDPRILRVDDTLAAMQAMARYARARFGGRMLAVTGSVGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ K+ML  AL++   T+  + SYNNH GVPLTLAR+P    + + E+GM+H GEI  L 
Sbjct: 116 TSVKDMLHAALAACGPTHCAVASYNNHWGVPLTLARLPAGAAYCVCEIGMNHAGEIAPLA 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN---YDDSFFELLK 236
            +VRP +AV+TT+A +HL     +E IA  KAEI   L + G   +       +FFE   
Sbjct: 176 AMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRGGIGIIPDGVSGQAFFERNA 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A++ A    T++  G  +         +  +  S   ++L G   E      G HMA N 
Sbjct: 236 AQAGA----TVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVGEAHVSAPGRHMAANA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++ LG      AD+  A+  L+ F P  GRG   +  + Q    L+DESYNA+PAS++AA
Sbjct: 292 MLALGAACAAGADMARAVAGLATFRPGAGRGAMTK--VMQDKVALLDESYNASPASVQAA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + +L  ++P   GRR+AVLGDM E+G  +   H+ L   +   N   V+  G ++  L D
Sbjct: 350 LDLLGLVAP---GRRVAVLGDMLELGAFAGHEHVSLLPAVR-ANADIVFCCGPNMKTLFD 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            LP S+   ++     L   ++++L  GD V+VK S
Sbjct: 406 TLPPSLRGAWTPDSGQLAPLVRAALRAGDTVMVKGS 441


>gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
          Length = 479

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 252/474 (53%), Gaps = 28/474 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G +          G+SID+R++ P + F A+     DGHDF+  A+ K
Sbjct: 3   LWTAAEAARATGGRA---STDWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V + +   + +   P+  VDDV  AL  +  AAR R++A ++AITGSVGKT+TK
Sbjct: 59  GAAAALV-SHVPPGVDAARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LSS  +T+A   SYNNH GVPLTLARMP D  F + E+GM+H GEI  L+ + R
Sbjct: 118 EMLRDVLSSHGRTHAAEASYNNHWGVPLTLARMPADTQFAVIEIGMNHPGEIAPLSRMAR 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+APAHL+ F  +E IA  KA IFEGLE+ G    N D +   +L A + A  
Sbjct: 178 PHVAMVTTVAPAHLAAFESLEGIAREKASIFEGLEEGGAAVYNGDLAVSPIL-ADTAARH 236

Query: 244 IKTIYSFGKS-----KNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              + SFG+S     +     L+     +E ++W    L    +       G H A N +
Sbjct: 237 AAHLLSFGESPAMHHRVTRITLKNACTVAEGRAWRSPVLFKIMVP------GRHFAVNAM 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASM 353
             L +      D    + +L  + P  GRG R R  L+         LID+SYNANPAS+
Sbjct: 291 GVLAVTHARGLDRAKVVTSLGQWQPGSGRGARERIVLDIVDAHVVVELIDDSYNANPASL 350

Query: 354 KAAISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            AA+ VL+   P  +      GRRIA LGDM E+G    + H  LAE  ++  I  V   
Sbjct: 351 GAALEVLAAAVPSNDMGRVSKGRRIAYLGDMKELGRTEAALHAALAEHPAMALIDRVHCV 410

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           G  +  L + LP      ++ET D +   +   L  GDVV+ K S S G  R++
Sbjct: 411 GPLMRHLWEVLPDGKRGRWTETADEMAANVARDLDAGDVVLAKGSLSMGLARVV 464


>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
 gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
          Length = 449

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 237/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N + ++S+ +   + F A+KG   DGHD+ L A+ KGA  V+V+  +  +       +  
Sbjct: 23  NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITDKD---KILL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L I L      +A  G++NN++
Sbjct: 79  VDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNFNNYL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D+++ I ELGM+H GEIR L  +++P+IAVIT I+ AHL  F+ +EEIA
Sbjct: 139 GLLINLASMADDMEYAILELGMNHKGEIRELVQILKPNIAVITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIFE   K     +N D + +  + +    L I  +Y+FG   N   QL  ++   
Sbjct: 199 EAKCEIFENFSKNDIAVINADTNCYSKILSILKNLYIDRVYNFGILHNTHAQLVLYEHLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            Q  ++ ++  KS+E+    I  H A+N  + L I+ IL  D++ A   L+  +P +GRG
Sbjct: 259 AQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLIIDILGKDIEIAANHLANIYPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +N     +I + YNA+P SM+AA+  L Q+       + A++GDM E+G+ S+ 
Sbjct: 319 D----IINIQNARVICDYYNASPKSMQAALEYLKQVMAEN---KTAIIGDMLELGKNSKL 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H +L   +     S ++L G +   + D LP  I   Y + +D L   I       D++
Sbjct: 372 LHEELVPYILDVGCSKIYLVGVNTKYIYDLLPSKIAKKYFKNVDELITHITDLFKGNDLI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGLKLDKIVD 446


>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
 gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
          Length = 449

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 238/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +   + F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGDLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEIND---KYKIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L ++L      +A  G++NN +
Sbjct: 79  VDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +EEIA
Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSSKTSAELILYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V    I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----MINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L + I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELIMHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 477

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 252/474 (53%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PLWT  +      G +     + F   G+SID+RS+ P + F A+     DGH F+  
Sbjct: 1   MTPLWTSDEAAATTGGRAT----RAFAATGVSIDTRSLGPGDLFVALTD-QRDGHAFVAE 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGK
Sbjct: 56  ALARGAAAALVSRRPEGL--PEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+
Sbjct: 114 TSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++
Sbjct: 174 RLARPHLALITTVAAAHLEAFDSLSAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            ALG+  + +FG++ +AD++L   +   E +       G +        G H A N L T
Sbjct: 234 AALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALAT 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356
           L     L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A+
Sbjct: 293 LAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAAS 352

Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  
Sbjct: 353 LELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466


>gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
 gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
          Length = 472

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 174/474 (36%), Positives = 246/474 (51%), Gaps = 26/474 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D   A  G + G   +   +G+SID+R+IA  + F A+     DGHDF+  A+ K
Sbjct: 3   LWTATDAAAATGGRTSG---EWAASGVSIDTRTIAKGDLFVALADIR-DGHDFVGMALDK 58

Query: 64  GAG--LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA   LV    + VA       P+  V +VL AL  L  AAR R+ A +I ITGSVGKT+
Sbjct: 59  GAAAALVTHRPEGVAD----DAPLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   L +  K +A   SYNNH GVPLTLARMP D +F I E+GM+H GEI  L  +
Sbjct: 115 TKEMLRTVLQAQGKIHAAEASYNNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAKM 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +   A+ITT+APAHL  F  + EIA  KA I EGL   G +  N D   +++++  + A
Sbjct: 175 AQLDAAMITTVAPAHLEAFGSVAEIAVEKAAITEGL--NGPLIANRDIETWDVIRDVAAA 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +  + FG   +A F L   +     + +  +  G  + +     G H A N L  + 
Sbjct: 233 AETQVTW-FGAQADA-FVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAVA 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAI 357
           +   + AD+  A   ++ + P  GRG R    L+         L D+++NANP SM+A++
Sbjct: 291 VCDAVGADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRASL 350

Query: 358 SVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+   P        +GRRIAVLGDM E+G      H D+A   SL  ++ V   G  +
Sbjct: 351 EVLAATQPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPRM 410

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464
            +L D LP      + E + G       SL+D GDV++VK S       +++ L
Sbjct: 411 RSLYDVLPEGQRGQWVE-IAGELAGKAHSLIDAGDVILVKGSKGSKVSLIVDAL 463


>gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
          Length = 450

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 243/436 (55%), Gaps = 13/436 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            N I  +S+ I   + F A++G + DGHD+I  A+ +GA  V+V+  +  +  +    + 
Sbjct: 22  TNEIQFNSKDIKKGDLFIALQG-NKDGHDYIQDAINQGASAVIVSKQVDIADKN---KII 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA+  R  S A  IAITGSVGKT+TKE L   L     T+A  G++NNH
Sbjct: 78  LVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNFNNH 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+ + LA MP D +F IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +E+I
Sbjct: 138 LGLLINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEDI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIFE  +K G   +N D + ++ + +    L I+ I++FGKS +A+  L  ++  
Sbjct: 198 AEAKCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHNFGKSSSAELIL--YEIS 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            EQ  ++ ++    +E     I  H A+N    L I+ +L  D++ A   L      +GR
Sbjct: 256 GEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLNKAAGYLKNIPMTKGR 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           GK     +N G   +I + YNA+P SMKAA+  L Q+       + A++G+M E+G+ S+
Sbjct: 316 GK----IINIGNSRIICDYYNASPTSMKAALEYLKQMPA---TNKTAIIGEMLELGQNSE 368

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H +L   +     S V+L G +   + DALP  I   Y + +D L         + ++
Sbjct: 369 RLHKELVPYILDSGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIASTNDLFKNDEL 428

Query: 447 VVVKSSNSCGFYRLIN 462
           +++K S      ++I+
Sbjct: 429 ILIKGSRGIKLDKIID 444


>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
 gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
           rickettsii]
 gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 449

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +     F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L + L      +A  G++NN +
Sbjct: 79  VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +EEIA
Sbjct: 139 GMLINLASMADDTEYAIFELGMNHQGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSAKTSAELMLYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V    I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L   I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 458

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 179/472 (37%), Positives = 244/472 (51%), Gaps = 21/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++ QA  G  +   P   V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MTALWTSEEIAQATGG--VASAPFA-VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+        +++ P   V D   AL  LA A+R R +  ++ +TGSVGKT
Sbjct: 58  FGQGAAGAIVSE-------AIAQPHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKT 110

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL  I   + +  + SYNNH+GVPL+L+RMP +  +G+FE+GM+H GE+  L
Sbjct: 111 GTKEALFHALDRICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--K 236
           T  VRPH+A++T IAPAH+  F   E+IA AKAEIFEGLE  GT  + YD      L  K
Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A+ HA     I +FG    AD   R+        + +   L G  +       G H   N
Sbjct: 231 AEKHA---ARILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSN 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L  V  +  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM A
Sbjct: 288 ALAVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMAA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
               L Q+     GRRIAVLG M E+G+ S+  H  L E L   ++ +  L G  +  L 
Sbjct: 348 ---TLKQLGREQAGRRIAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGDEMQPLA 404

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +AL   I   +          IQ  +  GD ++VK SN  G  RL+  L E+
Sbjct: 405 EALGGVIAFDHVPDAAKATDLIQGEMRAGDAILVKGSNGIGLSRLVAALQEK 456


>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
 gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
          Length = 449

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 236/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +     F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L + L      +A  G++NN +
Sbjct: 79  VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +EEIA
Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSAKTSAELILYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V+   I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINKKVLDVMIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L   I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           8C-3]
          Length = 216

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 157/216 (72%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           EAFFAIKG   DGHD+   A+  GA L+VV+   + ++G L++P+  VDDVL AL +L  
Sbjct: 1   EAFFAIKGDRVDGHDYASMAMANGASLLVVSEARLPAMGRLTVPMIVVDDVLAALGRLGQ 60

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A+R RS+A IIA+TGSVGKTTTKEML   LS   K +A + S+NNH GVPLTLARMP D 
Sbjct: 61  ASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDT 120

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+G+FE+GM+H GEIR L  ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  
Sbjct: 121 DYGVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPG 180

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           G + LN D+  F  L   + +LG++ I+SFG+   A
Sbjct: 181 GHVVLNRDNDQFNFLDRTAQSLGVEHIHSFGQHAKA 216


>gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           6-diaminopimelate--D-alanyl ligase [Rickettsia
           montanensis]
          Length = 449

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +   + F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGDLFIALQG-NRDGHDYVLDAIDKGAAAVIISKQVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  I ITGSVGKT+TKE L + L      +A  G++NN +
Sbjct: 79  VDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +EEIA
Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSSKTSAELILYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V    I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L   I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELMTHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
 gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
          Length = 449

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +     F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L + L      +A  G++NN +
Sbjct: 79  VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +EEIA
Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSAKTSAELILYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V    I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L   I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYINDLLPAKIAKKYFKNVDELITHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
 gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
          Length = 449

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +     F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L + L      +A  G++NN +
Sbjct: 79  VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +EEIA
Sbjct: 139 GMFINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSAKTSAELILYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V    I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L   I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
 gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
          Length = 463

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 256/467 (54%), Gaps = 14/467 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 1   MWCAKSMGAAVRGLCLG-KDWTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59

Query: 64  GAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120
           GA   VV+   V  A  G    P+  V D L AL+ +A   RLR ++A +IAITGS GKT
Sbjct: 60  GAVAAVVDEAYVPTADCG----PLVAVKDTLQALHDIATM-RLRDTRAKVIAITGSAGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ 
Sbjct: 115 TTKYVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + 
Sbjct: 175 IARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAE 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +   + I SFG    AD Q+ + ++ S    + ++  G+ ++        H+A ++ +T 
Sbjct: 235 SYCARII-SFGVGAGADVQIFRREEPSNS--ITLRCFGEELQCNLKSGARHLAYSVAITA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +    + D+  A  A+  F P EGRGK +          L+D++YNANP SM AAI  L
Sbjct: 292 AVGRAFSIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S ++     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+
Sbjct: 352 SNLNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHILALYDVLPQ 411

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   H+++  + L   ++  +  GD V+VK S +     ++  LLE
Sbjct: 412 HLSGGHFADHGEAL-AHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457


>gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
 gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
          Length = 450

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 153/436 (35%), Positives = 242/436 (55%), Gaps = 13/436 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            N I  +S+ I   + F A++G + DGHD+I  A+ +GA  V+V+  +  +  +    + 
Sbjct: 22  TNEIQFNSKDIKKGDLFIALQG-NKDGHDYIQDAINQGASAVIVSKQVDIADKN---KII 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA+  R  S A  IAITGSVGKT+TKE L   L     T+A  G++NNH
Sbjct: 78  LVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNFNNH 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+ + LA MP D +F IFELGM+H GEIR L  +++P+IA+IT I+ AHL  F+ +E+I
Sbjct: 138 LGLLINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEDI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIFE  +K G   +N D + ++ + +    L I+ I++F KS +A+  L  ++  
Sbjct: 198 AEAKCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHNFDKSSSAELIL--YEIS 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            EQ  ++ ++    +E     I  H A+N    L I+ +L  D++ A   L      +GR
Sbjct: 256 GEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLNKAAGYLKNIPMTKGR 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           GK     +N G   +I + YNA+P SMKAA+  L Q+       + A++G+M E+G+ S+
Sbjct: 316 GK----IINIGNSRIICDYYNASPTSMKAALEYLKQMPA---TNKTAIIGEMLELGQNSE 368

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H +L   +     S V+L G +   + DALP  I   Y + +D L         + ++
Sbjct: 369 RLHKELVPYILDLGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIASTNDLFKNDEL 428

Query: 447 VVVKSSNSCGFYRLIN 462
           +++K S      ++I+
Sbjct: 429 ILIKGSRGIKLDKIID 444


>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
          Length = 449

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 234/435 (53%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +     F A++G + DGHD++L A+ KGA  V+++  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD   AL K+A+  R  SKA  IAITGSVGKT+TKE L + L      +A  G++NN +
Sbjct: 79  VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEIR L  +++P+I +IT I+ AHL  F+ +EEIA
Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNITMITNISEAHLEFFNSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF    K     +N D + +  + +    L I  I+SFG+S     +L  ++   
Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSAKTSAELILYENLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ +++ ++  K ++V    I  H  +N    L I+ IL  D++ A   L+   P +GRG
Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + A++GDM E+GE S+ 
Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L + +     S V+L G +   + D LP  I   Y + +D L   I       +++
Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
 gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
          Length = 476

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 256/465 (55%), Gaps = 10/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 14  MWCAKSMGAAVRGLCLG-KDWTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   VV  D V+   +   P+  V D L AL+ +A   RLR ++A +IAITGS GKTTT
Sbjct: 73  GAVAAVV--DEVSVPTADCGPLVAVKDTLRALHDIATM-RLRDTRAKVIAITGSAGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + 
Sbjct: 130 KYVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIA 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + + 
Sbjct: 190 RPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I SFG    AD Q+ + ++ S    +  +  G+ ++        H+A ++ +T  +
Sbjct: 250 CARII-SFGVGVGADVQIFRREEPSNS--VTFRCFGEELQYNLKSGARHLAYSVAITAAV 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
               + D+  A  A+  F P EGRGK +  A       L+D++YNANP SM AAI  LS 
Sbjct: 307 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ +
Sbjct: 367 LNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHL 426

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              H+++  + L   ++  +  GD V+VK S +     ++  LLE
Sbjct: 427 RGGHFADHGEAL-AHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 470


>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
 gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
          Length = 463

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 256/465 (55%), Gaps = 10/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 1   MWCAKSMGAAVRGLCLG-KDWTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   VV  D V+   +   P+  V D L AL+ +A   RLR ++A +IAITGS GKTTT
Sbjct: 60  GAVAAVV--DEVSVPTADCGPLVAVKDTLRALHDIATM-RLRDTRAKVIAITGSAGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + 
Sbjct: 117 KYVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIA 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + + 
Sbjct: 177 RPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I SFG    AD Q+ + ++ S    +  +  G+ ++        H+A ++ +T  +
Sbjct: 237 CARII-SFGVGVGADVQIFRREEPSNS--VTFRCFGEELQYNLKSGARHLAYSVAITAAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
               + D+  A  A+  F P EGRGK +  A       L+D++YNANP SM AAI  LS 
Sbjct: 294 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ +
Sbjct: 354 LNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHL 413

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              H+++  + L   ++  +  GD V+VK S +     ++  LLE
Sbjct: 414 RGGHFADHGEAL-AHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457


>gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
 gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
          Length = 478

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 178/467 (38%), Positives = 249/467 (53%), Gaps = 31/467 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+  + + A QG S          G+SID+R++ P + F A+     DGH+F+  A+ K
Sbjct: 3   LWSAKEAVAATQGRSTA---DWQATGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQALAK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   +        P+  V+DV   L  L  AAR RS+A ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVSR--IPEGLPAEAPLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L    +T+A   SYNNH GVPLTLARMPVD +F + E+GM+H GEI  L  + R
Sbjct: 117 EMLRDVLGHQGRTHAAEASYNNHWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLACMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVITT+A AHL  F  I+ IA  KA IFEGLE  G   +N D +   +L+AK+ A  
Sbjct: 177 PHVAVITTVAAAHLEAFENIDGIAKEKASIFEGLEPGGVAVINADIATTPILRAKA-AQH 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE------QSWMEVQLQGKSMEVVHHGI-GYHMAQNM 296
              I SFG ++ A  +L   +          ++W       +S  V   G+ G H A N 
Sbjct: 236 AARILSFGTARGAHHRLLNVELHDHVTVGHARAW-------RSPLVYKVGVPGRHFAMNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGF-FTLIDESYNANPAS 352
           L  L +  +L  D   A+  L+ + P  GRG R    L+    G    LID+++NANP S
Sbjct: 289 LAVLAVAQVLGCDRAVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTS 348

Query: 353 MKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           M AA+ VL+   P         GRRIA+LGDM E+G    + H  LA++  +  I+ +  
Sbjct: 349 MAAALEVLAAAHPRDGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHC 408

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            G  + AL D LP +    +  + + L       +  GDVV+VK S 
Sbjct: 409 VGPRMRALWDILPEARRGRWVASAEELAAQAHRLIDAGDVVLVKGSK 455


>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 458

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 253/468 (54%), Gaps = 21/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G   G+    + + IS D+RSI   + F A+KG  +DGHDF+  A  KG
Sbjct: 4   WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121
           A   VV+ D   +      P+  V D L AL+ +A +  +R+    A +I ITGSVGKTT
Sbjct: 64  AVAAVVSEDKYRNF-----PLIIVQDTLKALHNMA-SYYIRNILVNAKVITITGSVGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+ML   L     ++   G+ NN+IG+P T+ + P D  + I E+GMS  GEI+ L+ +
Sbjct: 118 TKDMLNTVLLHYGVSHVNEGNLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT I PAH+ NFS + +IA AK EI  G++  GT+ LN D+  ++ L + ++ 
Sbjct: 178 SNPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSNAN- 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTL 300
              + + SFGK+++A   L +  +      ++++L  G+ M       G H A + L+  
Sbjct: 237 ---RNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVT 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L  D+     AL  F   EGRG  ++   N     LI++SYNANP SMKAAI  L
Sbjct: 294 AVLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTL 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              S     R++A+LGDM  +G  S  FH +L + +   N++ V   G  +L L   LP 
Sbjct: 354 GTYS---NLRKVALLGDMLGLGNESIVFHTELLDSIVEQNVNKVHTVGKFMLELNKLLPE 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +I   + +  + L   + + +   DV++VK S+       ++L+++EF
Sbjct: 411 NIKGMHFDDSNQLKSNLANIVQGNDVILVKGSHGMR----MDLVVQEF 454


>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
 gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
          Length = 509

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 266/520 (51%), Gaps = 74/520 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121
           A   +V+     S      P+  V D L AL+ +A +  +R+    A +IA+TGSVGKTT
Sbjct: 64  AVAAIVSEGKYKSF-----PLMIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+ +GEI+ L+ +
Sbjct: 118 TKDMLHTVLSQYGVSHASEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L   SHA
Sbjct: 178 SNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL--SSHA 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS------------------------------- 270
              + + SFGK KNA+  L    +  E S                               
Sbjct: 236 --NRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYN 293

Query: 271 --WMEVQLQGKSMEVVHHGI-------------------GYHMAQNMLMTLGIVSILTAD 309
             W+     G +   V + +                   G H A ++L    +V  L  D
Sbjct: 294 KDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLD 353

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +     AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S     
Sbjct: 354 LSKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ--- 410

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSE 428
           R++A+LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   H+++
Sbjct: 411 RKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFND 470

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + + L   + + + + D ++VK S        ++L++ EF
Sbjct: 471 S-NQLKSDLANIIQNNDAILVKGSRGMK----MDLIVREF 505


>gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
 gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
          Length = 478

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 183/475 (38%), Positives = 258/475 (54%), Gaps = 22/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  D   A  G S  +      +G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MAPLWTSTDAATATGGRSTTVW---QAHGVSIDTRTLQPGDLFVALKDVR-DGHDFVAAA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+   +    + + P+  V DVL  L  L  A R R++A +I +TGSVGKT
Sbjct: 57  LAKGAAAALVSR--IPEGVAANAPLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLAR+P   DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRCMLLGQGSVHAAEASYNNHWGVPLTLARLPATADFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKS 239
           + R H+A+ITTIA AHL+ F G+E IA  KA I +GLE  G   L  D +    LL+A S
Sbjct: 175 MARLHVALITTIATAHLAAFDGLEGIAREKATIIQGLEPGGIAVLPTDLAVSPVLLRAAS 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               ++++ +FG +K+ADFQ+      ++ + ++    G    +     G H A N +  
Sbjct: 235 ---AVRSL-TFGTAKSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGC 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAA 356
           L +   L+ D   A   L  + P  GRG R R    A++   F LID++YNANPAS+ AA
Sbjct: 291 LAVAEALSLDPTIATHDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAA 350

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRRIA+LGDM E+GE   + H+ +A    L  IS +   G  
Sbjct: 351 LEVLAASQPTDGVGRIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHCVGPL 410

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464
           +  L DALP+     +  T   L L   ++LVD GD+V+VK S       +++ L
Sbjct: 411 MRGLHDALPKRQRGEWVATAPEL-LARAATLVDAGDIVLVKGSKGIKVSLMVDGL 464


>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 475

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 248/469 (52%), Gaps = 20/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVN-------GISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           LWT  +LL A  GH       G  +       G+SID+R++A  + F A+ G + DGH  
Sbjct: 6   LWTGTELLTATGGHFRASPHPGAASCEGLRATGVSIDTRTLAAGDIFVALVGENSDGHAH 65

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+  GA +V+ + D     G     +  VDD L ALN +A  AR R    +IA+TGS
Sbjct: 66  ITRALDAGAAVVIAHRD----PGVEDARILLVDDTLSALNAMAAFARTRFAGRMIAVTGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTTTK+ML  AL +   T+  + SYNNH GVPLTLAR+P    F + E+GM++ GEI 
Sbjct: 122 VGKTTTKDMLRHALGACGPTHWAVASYNNHWGVPLTLARLPASAMFCVCEVGMNNPGEIA 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  +VRP +AVITTI  AHL +   +E IA  K+++   L + G   +  D +   +  
Sbjct: 182 PLAQMVRPDVAVITTITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTGMAIFA 241

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++   G + +++ G    +  ++  +++  +       + G S  V  H  G HMA N 
Sbjct: 242 TQARNHGAR-LWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ L     + AD+  A++ L+ F P  GRG      +  G  +L+DESYNA+ AS++A 
Sbjct: 301 LVALTAAYAVGADMACAVRGLADFRPGAGRGAIT--PILHGQASLLDESYNASVASIRAT 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALK 415
           + VL Q+      RRIAVLGDM E+G  ++  H   L +V    ++  V+  G ++  L 
Sbjct: 359 LDVLGQVPAR---RRIAVLGDMLELGAFARDQHESLLPDVREHADL--VFCCGPNMKYLF 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           D LP S    ++     L   +++++  GD ++VK S      ++++ L
Sbjct: 414 DLLPPSRRGAWAPDAATLAPQVRAAMRAGDAILVKGSLGLKMRQVVDAL 462


>gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
 gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
          Length = 463

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 177/470 (37%), Positives = 242/470 (51%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  ++ +A  G +        V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MSDLWTSAEIAEATGGAASAPF---AVSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+        ++  P   V D   AL  L +A+R R    +I +TGSVGKT
Sbjct: 58  FAQGAAGAIVSD-------AVDHPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKT 110

Query: 121 TTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L +AL  ++  + +  + SYNNH+GVPL+LARMP D  +GIFE+GM+H GE+  L
Sbjct: 111 GTKEALYLALDRAAPGQAHRSVKSYNNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--K 236
           TH VRPH A++T IAPAH+  F    +IA AKAEIFEGLE      + YD      L  K
Sbjct: 171 THQVRPHAAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAAAIIPYDSPHVATLYNK 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A+ HA     I +FG S  AD   L      +  + +  +L    +       G H   N
Sbjct: 231 AERHA---ARILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSN 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L  V  +  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM A
Sbjct: 288 ALAVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
               L Q+      RRIAVLG M E+G  S   H  LA+ L+   I    L G  +  L 
Sbjct: 348 ---TLKQLGREHADRRIAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAEMAPLA 404

Query: 416 DALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           DAL  ++ + H  +    + L I+  +  GD ++VK SN  G  RL+  L
Sbjct: 405 DALEGTMAYAHVPDAASAIPL-IKKEMRAGDAILVKGSNGIGLSRLVAAL 453


>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 455

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 256/454 (56%), Gaps = 24/454 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W  ++++ A  G        G  N  IS D+R+I   + F A+KG ++DGHDF+  A  K
Sbjct: 4   WNTNNIIDATGGRG----KSGCHNLNISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKT 120
           GA   VV+ D   ++     PV  V D L AL+ +A +  +R+    A +IAITGSVGKT
Sbjct: 60  GAAAAVVSEDKYRNL-----PVIVVQDTLKALHDMA-SYYIRNVLVNAEVIAITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+ML   LS    ++   G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ 
Sbjct: 114 TTKDMLHTVLSQYGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P+IAVIT I P H+ NFS + +IA AK EI  G++  GT+ LN D+ +++ L   SH
Sbjct: 174 ISNPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYL--LSH 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
               + + SFG+S++A   L    +  +   ++++L    +   +  + G H   ++L  
Sbjct: 232 V--DRDVVSFGRSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAV 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++  L  ++     AL  F+  +GRG  ++   N     LID+SYNA+PASMKAAI  
Sbjct: 290 VAVIQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S     R++A+LGDM E+G  S +FH+ L + +  Y++  V+  G  +L L   LP
Sbjct: 350 LGIYSNR---RKVALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVGKFMLKLHRLLP 406

Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +I   H++++ + L   + + + + DVV+VK S
Sbjct: 407 GNIKGTHFNDS-NQLKSNLANIVQNNDVVLVKGS 439


>gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
 gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
          Length = 478

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 169/461 (36%), Positives = 248/461 (53%), Gaps = 18/461 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G +IG       +G+SID+R++AP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAKEAESATGGRAIG---DWSCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V    V    + + P+  V+DVL AL  L  AAR R++A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVT--HVPEGVAENAPLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML    +   + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  + +
Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++TT+A  HL  F+ + EIA  KA +F+GL+  G   +N D     +L AK+    
Sbjct: 177 PDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +  FG+     ++L   +   + + +     G  +       G H A N L  L   
Sbjct: 237 LREV-EFGE-HGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             + AD+  A  +L  + P +GRG R    L+         LID+SYNANP SM AA+ V
Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEV 354

Query: 360 LS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+       I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  + +
Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMKS 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L D LP      ++ET   L   + S L  GDVV+ K S S
Sbjct: 415 LYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLS 455


>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 264/520 (50%), Gaps = 74/520 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121
           A   +V+     S      P+  V D L AL+ +A +  +R+    A +IA+TGSVGKTT
Sbjct: 64  AIAAIVSEGKYKSF-----PLIIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ +
Sbjct: 118 TKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L   SHA
Sbjct: 178 SNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL--SSHA 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS------------------------------- 270
              + + SFGK KNA+  L    +  E S                               
Sbjct: 236 --NRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYN 293

Query: 271 --WMEVQLQGKSMEVVHHGI-------------------GYHMAQNMLMTLGIVSILTAD 309
             W+     G +   V + +                   G H A ++L    +V  L  D
Sbjct: 294 KDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLD 353

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +     AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S     
Sbjct: 354 LSKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ--- 410

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSE 428
           R++A+LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   H+++
Sbjct: 411 RKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFND 470

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + + L   + + + + D ++VK S        ++L++ EF
Sbjct: 471 S-NQLKSDLANIIQNNDAILVKGSRGMK----MDLIVREF 505


>gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 478

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 246/461 (53%), Gaps = 18/461 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G +IG       +G+SID+R++AP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAKEAESATGGRAIG---DWTCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V    V    +   P+  V+DVL  L  L  AAR R++A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVT--HVPEGVAEDAPLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML    +   + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  + +
Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++TT+A  HL  F+ + EIA  KA +F+GL+  G   +N D     +L AK+    
Sbjct: 177 PDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +  FG+     ++L   +   + + +     G  +       G H A N L  L   
Sbjct: 237 LREV-EFGE-HGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             + AD+  A  +L  + P +GRG R    L+         LID+SYNANP SM AA+ V
Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEV 354

Query: 360 LS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+       I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  + +
Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMKS 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L D LP      ++ET   L   + S L  GDVV+ K S S
Sbjct: 415 LYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLS 455


>gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 489

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 244/472 (51%), Gaps = 27/472 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+  ++ +A  G + G       +G+ +DSR + P + F A+KG   DGH FI  A   
Sbjct: 26  LWSADEIAEATGGVASGDFQ---CSGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFAA 82

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+         +  P   V+D   AL+ LA AAR R +AT IA+TGSVGKT  K
Sbjct: 83  GAAAAIVDR-------PIDWPHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGVK 135

Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E +  AL  +S  + +  + SYNNH+GVPL++ARM     +G+FE+GM+H GEI  L   
Sbjct: 136 EAIFSALDRASRGQAHRSVRSYNNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAPLADH 195

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRP +AVITTIAPAH+ N   +E IA  KA+IF GL+  G   +  D   FE LKA + A
Sbjct: 196 VRPDVAVITTIAPAHIENLGSLEAIADEKAQIFTGLKPGGAAIIPADSEQFERLKAHAEA 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            G + ++SFG++ +A  +L      +    S +  Q+    +       G H   N L  
Sbjct: 256 AGAE-VFSFGRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLAV 314

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  +  D+  A  AL      +GRG R+  A   G   LIDESYNANPASM+A ++ 
Sbjct: 315 MACIYAVGGDLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLTQ 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q       RRIAVLG M E+GE S  FH  L E +    + +  L G  +  L   + 
Sbjct: 375 LGQTP---ASRRIAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKMG 431

Query: 420 RS---------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +            H +   + +    +  L  GD ++VK SN+ G  RL++
Sbjct: 432 TAHANGLGNPPAFAHCAGPAEAIAALEEFGLNAGDAILVKGSNAVGLGRLVD 483


>gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
 gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
          Length = 478

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 247/463 (53%), Gaps = 22/463 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G ++G       +G+SID+R++   + F A+K    DG DF+  A++K
Sbjct: 3   LWTATEAAAATGGRAVG---DWSCDGVSIDTRTLQAGDLFVALKDVR-DGQDFVATALEK 58

Query: 64  GAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           GAG  +V+   D VA       P+  VDDVL  L  L  AAR R+ A ++A+TGSVGKT+
Sbjct: 59  GAGAALVSRVPDGVAD----DAPLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML    +   + +A + SYNNH GVPLTLARMPVD D+ + E+GM+H GEI  L  L
Sbjct: 115 TKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPVDTDYAVIEIGMNHPGEISPLAIL 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A++TT+A  HL  F  +  IA  KA IF+GLE  G   +N D     +L AK+  
Sbjct: 175 TKPDAAMVTTVAAVHLEAFDDVAGIALEKAAIFDGLEPGGVAVINADIDHAAILMAKAVD 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             ++ I  FG++    F+L+  +   + + ++    G  +       G H A N L  L 
Sbjct: 235 RRLRDI-EFGENAY-HFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGALA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAI 357
           +   + AD+  A  +L  + P +GRG R    L+    +   +LID+SYNANP SM AA+
Sbjct: 293 VAQAMGADLALAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAAAL 352

Query: 358 SVLS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+       I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  +
Sbjct: 353 EVLAASEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLM 412

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +L D +P      ++ T   L   + + L  GDVV+ K S S
Sbjct: 413 RSLYDLIPAHQRGDWAATSAELLPGLGAHLDSGDVVLAKGSLS 455


>gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 479

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 173/450 (38%), Positives = 237/450 (52%), Gaps = 18/450 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           V G+SID+R +AP + F A+     DGHDF+  A+  GAG  +V+   + VA       P
Sbjct: 24  VTGVSIDTRELAPGDLFVALTA-ARDGHDFVAQALAAGAGAALVSRIPEGVAE----DAP 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V DV  AL  L  A R R++A +IAITGSVGKT+ KEM+  AL+S  + +A   S+N
Sbjct: 79  LLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAAERSFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH GVPLTLARMP   +  + E+GM+H GEI  L  + RPH A+ITTIA AHL     +E
Sbjct: 139 NHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAALITTIAAAHLEALGSLE 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  KA IFEGLE  G   +  D     +L+A +   G + I SFG       +L   +
Sbjct: 199 AIAVEKASIFEGLEPDGLAVIPGDLPQTPILRAAAEDAGAR-IESFGTGAGNTHRLSDVQ 257

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                +    QL G  M +     G H  +  L  L  V+ + AD   A+ AL  + P  
Sbjct: 258 AVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGADPARALMALGAWAPPS 317

Query: 325 GRGKRYRCALNQGF----FTLIDESYNANPASMKAAISVLSQISPH------GEGRRIAV 374
           GRG R R  L+         LID+++NANP SM AA+ +L+Q +P        +GRRIA+
Sbjct: 318 GRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQAAPAHDIGRIAKGRRIAI 377

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G    + H  LA   ++  I+ V   G  + AL  ALP      + ET   L 
Sbjct: 378 LGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAALPEDKRGRWVETAQALV 437

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               + +  GDVV+VK S       +++ L
Sbjct: 438 PHAHALVDAGDVVLVKGSKGSRVSLVVDAL 467


>gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 164/464 (35%), Positives = 252/464 (54%), Gaps = 8/464 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT   L  A  G   G  P   V G+SID+R++AP + F A+ G + DGH  +  A
Sbjct: 1   MTVLWTRAALQDATGGTFTGQAPVA-VTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +++   V    S    +  V D + ALN L   AR R    ++A+TGSVGKT
Sbjct: 60  LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML +AL +I  T+    SYNNH GVPLTLAR+P+D  F + E+GM+H GEI  L  
Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP +A++TTIA AHL +   +E IA  K+++   L   G I +  DD+  + + A+  
Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAG-IAIVPDDATGQPIFAEQA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T++  G+  ++   +      +E S   V + G+S+ V  +  G H+ +N    L
Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L AD+ TA  AL+ F P  GRG      +  G   L+DESYNA+  S++++++VL
Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALK--PILGGRAALLDESYNASVLSVRSSLAVL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +      RR+AVLGD+ E+G  +++ H  L   + L +   V+ SG  +  L D LP 
Sbjct: 357 GLLP---ATRRMAVLGDIRELGAFARAEHESLLSAV-LAHADLVFCSGPDMKYLFDLLPP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S    ++     L   ++ ++   DV++VK S       ++++L
Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVSVL 456


>gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 247/452 (54%), Gaps = 8/452 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT   L  A  G   G  P   V G+SID+R++AP + F A+ G + DGH  +  A
Sbjct: 1   MTVLWTRAALQDATGGTFTGQAPVA-VTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +++   V    S    +  V D + ALN L   AR R    ++A+TGSVGKT
Sbjct: 60  LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML +AL +I  T+    SYNNH GVPLTLAR+P+D  F + E+GM+H GEI  L  
Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP +A++TTIA AHL +   +E IA  K+++   L   G I +  DD+  + + A+  
Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAG-IAIVPDDATGQPIFAEQA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T++  G+  ++   +      +E S   V + G+S+ V  +  G H+ +N    L
Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L AD+ TA  AL+ F P  GRG      +  G   L+DESYNA+  S++++++VL
Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALK--PILGGRAALLDESYNASVLSVRSSLAVL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +      RR+AVLGD+ E+G  +++ H  L   + L +   V+ SG  +  L D LP 
Sbjct: 357 GLLP---ATRRMAVLGDIRELGAFARAEHESLLSAV-LAHADLVFCSGPDMKYLFDLLPP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           S    ++     L   ++ ++   DV++VK S
Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGS 444


>gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 477

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 182/476 (38%), Positives = 255/476 (53%), Gaps = 22/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PLWT  +   A  G +     + F   G+SID+RS+ P + F A+     DGH F+  
Sbjct: 1   MTPLWTSDEAAAATGGCAT----RAFAATGVSIDTRSLGPGDLFVALAD-QRDGHAFVAE 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           A+ +GA   +V+       G L    P+  V DVL  L  L  AAR R++A ++ +TGSV
Sbjct: 56  ALARGAAAALVSR----RPGGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSV 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  
Sbjct: 112 GKTSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAP 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A
Sbjct: 172 LSRLARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAA 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ ALG+  + +FG++ +AD++L   +   E +       G +        G H A N L
Sbjct: 232 RAAALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNAL 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMK 354
            TL     L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM 
Sbjct: 291 ATLAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMA 350

Query: 355 AAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A++ +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G
Sbjct: 351 ASLELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVG 410

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             + AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L
Sbjct: 411 PRMRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466


>gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
 gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
          Length = 493

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 244/479 (50%), Gaps = 33/479 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           PL  +H   +AI     G     F V G+ +DSR +   + F A+KG   DGH F+  A 
Sbjct: 23  PLTLWHS--KAIAEAVGGTASSDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDKAF 80

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +V+         +  P   V+D   AL  LA AAR R++A II +TGSVGKT 
Sbjct: 81  ANGAAAAIVDR-------PVDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTG 133

Query: 122 TKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
            KE +  +L    +  A     SYNNH+GVPL+LARMP    FGIFE+GM++ GEI  LT
Sbjct: 134 VKEAIFASLERASRGAAHRSTRSYNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEGLT 193

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             VRPH+AVITTIAPAH+ N   +E IA AKAEIF GLE  G   +  D   FE L+  +
Sbjct: 194 TQVRPHVAVITTIAPAHIENLGSMEAIADAKAEIFAGLEPGGVAVIPADSEHFERLRLAA 253

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-------EVQLQGKSMEVVHHGIGYHM 292
             +   ++ SFG++ NAD +L      +    +         +  G+    V    G H 
Sbjct: 254 LRMS-ASVVSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAE-PGDHW 311

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +  V     D+  A  AL+     +GRG R+      G   LIDESYNANPAS
Sbjct: 312 VINSLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPAS 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+A ++ L Q       RRIAVLG M E+G+ +  FH  L+E L   ++ +  L G  + 
Sbjct: 372 MRATLAQLGQTP---SSRRIAVLGSMKELGDFAAKFHAGLSEPLIAADVDYALLVGDEMR 428

Query: 413 ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           AL   L +             H +   + + L  +  +V GD V+VK SNS G  +L++
Sbjct: 429 ALARELGKPAFNSLGNPLEWEHCNSAEEAIGLLQEFGIVAGDAVLVKGSNSVGLGKLVD 487


>gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase precursor
           [Rhodobacter sphaeroides KD131]
          Length = 477

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 181/474 (38%), Positives = 253/474 (53%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PLWT  +   A  G +     + F   G+SID+RS+ P + F A+     DGH F+  
Sbjct: 1   MTPLWTSDEAAAATGGCAT----RAFAATGVSIDTRSLGPGDLFVALTD-QRDGHAFVAE 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGK
Sbjct: 56  ALARGAAAALVS--RCPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+
Sbjct: 114 TSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++
Sbjct: 174 RLARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            ALG+  + +FG+S +AD++L   +   E +       G +        G H A N L T
Sbjct: 234 AALGVPAV-TFGQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALAT 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356
           L     L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A+
Sbjct: 293 LAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAAS 352

Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  
Sbjct: 353 LELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466


>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Mississippi]
          Length = 456

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 243/439 (55%), Gaps = 10/439 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ISID+R++ P + F AIKG ++DGH F+  A  KGA   VV  D V+   +   P+  V 
Sbjct: 20  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV--DEVSVPTADCGPLVAVK 77

Query: 90  DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D L AL+ +A   RLR ++A +IAITGS GKTTTK +L+ ALS   K Y    +YNN IG
Sbjct: 78  DTLRALHDIATM-RLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNNLIG 136

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PL  A +  D +F + E+GM+  GE+  L+ + RP +AVIT + PAHL  F  +E + +
Sbjct: 137 MPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITNVGPAHLEFFESVEGVLA 196

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+F  ++      LN+D  ++  ++A + +   + I SFG    AD Q+ + ++ S 
Sbjct: 197 AKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYCARII-SFGVGAGADVQIFRREEPSN 255

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +  +  G+ ++        H+A ++ +T  +    + D+  A  A+  F P EG  K
Sbjct: 256 P--VTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAFSIDLTQARGAMEEFVPLEG-SK 312

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +          L+D++YNANP SM AAI  LS ++     RR+A+LGDM E+G  S  +
Sbjct: 313 VHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVAILGDMLELGSGSCHY 372

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVV 447
           H  L E +   NI  V+  G H+LAL D LP+ +   H+++  + L   ++  +  GD V
Sbjct: 373 HRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLRGGHFADHGEAL-AHLERIIKPGDGV 431

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +VK S +     ++  LLE
Sbjct: 432 LVKGSFATKLSLVVKHLLE 450


>gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 477

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 253/474 (53%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PLWT  +   A  G +     + F   G+SID+RS+ P + F A+     DGH F+  
Sbjct: 1   MTPLWTSDEAAAATGGCAT----RAFAATGVSIDTRSLGPGDLFVALAD-QRDGHAFVAE 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGK
Sbjct: 56  ALARGAAAALVSRRPEGL--PEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+
Sbjct: 114 TSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++
Sbjct: 174 RLARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            ALG+  + +FG++ +AD++L   +   E +       G +        G H A N L T
Sbjct: 234 AALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALAT 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356
           L     L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A+
Sbjct: 293 LAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAAS 352

Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  
Sbjct: 353 LELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466


>gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
 gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
          Length = 476

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 234/454 (51%), Gaps = 14/454 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  ++  A  G   G      + G++ +SR I   + F A+KG   DGH+F  +A 
Sbjct: 7   RPLWTAAEVAAATGGVLHG--DDRPITGLTYNSREIVAGDLFLALKGAR-DGHEFAANAF 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
             GA   +V    V    S+ +P     D L  L  L VAAR R+      A+TGSVGKT
Sbjct: 64  AAGAAAALVERP-VEGGASVVVP-----DTLHGLEALGVAARERAPHVKRGAVTGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +  + +   L      +A I SYNNHIGVPLTLARMPV+    +FE+GM+  GEI  L+ 
Sbjct: 118 SVTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMPVETRRAVFEIGMNAPGEIAPLSR 177

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            V PH A +TT+ P H+  F+ G   +A  KA IF+GL   GT   N D +F  +L   +
Sbjct: 178 FVAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGTAVANGDVAFSGVLCDAA 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A+G + +  FG     D +L  ++  +E + +  +L G+ ++      G H   N L  
Sbjct: 238 RAVGARLVV-FGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  L   ++T ++AL+ F P  GRG+    A+  G FTLIDESYNANP SM A    
Sbjct: 297 LLMLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKS 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        GRRI VL DM E+G+ S + H  LA+ +    +  V  +G  +  L DALP
Sbjct: 357 LGARPT--AGRRIVVLTDMLELGDQSHALHEGLAQPIEAAGLDLVHAAGPEMRRLYDALP 414

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            S    + ET   L     +    GD+V+VK SN
Sbjct: 415 ASRRGLWRETAVELAAEASALAEAGDIVMVKGSN 448


>gi|296534967|ref|ZP_06897261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264705|gb|EFH11036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 395

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/341 (39%), Positives = 196/341 (57%), Gaps = 4/341 (1%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTKEML   L+++  T+A + SYNN  G+PLTLARMP D  +G+ E+GM+H 
Sbjct: 29  ITGSVGKTTTKEMLRHGLAALAPTHAAVASYNNQWGLPLTLARMPRDSAYGVLEIGMNHR 88

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  L  PH+A ITT+  AH+ +   +EEIA  KA+I +GL     + L  D + F
Sbjct: 89  GEIAPLARLAAPHVAAITTVEAAHIGHLGSLEEIAEEKADIMQGLAPGAPVVLPRDSASF 148

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             L  ++ A G++ + +FG    A+++L  ++  +E     + L+G++  +     G H+
Sbjct: 149 ARLAGRAEAAGLRMV-TFGADPAAEYRLLDYRGGAESGLATLSLRGETHALALAAPGRHL 207

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N L  + +   L AD    + AL+ F P  GRG R    L  G   LID+SYN  P +
Sbjct: 208 ALNALAAIALAEALGADRAGFLAALTEFRPGAGRGGRVVLDLPGGSALLIDDSYNGQPPA 267

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHV 411
           M+A + VL    P   GRRIAVLGDM E+GE   + H   L +VL+  ++  V+  G  +
Sbjct: 268 MRAGLGVLGSQIPGPGGRRIAVLGDMRELGEHGPALHASLLPDVLAAADM--VFCCGALM 325

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             L DALP +    + ++ D L   ++ ++  GDV++VK S
Sbjct: 326 RGLYDALPENRRAAHRDSSDELAPLVRQAVRPGDVILVKGS 366


>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 483

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 174/471 (36%), Positives = 242/471 (51%), Gaps = 23/471 (4%)

Query: 3   PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           PLWT  ++     G      +VP   ++ I++DSR       F A+ G   DGHDF+  A
Sbjct: 4   PLWTVDEICTHTSGIMAETAMVPAP-IDHITMDSRMCRKGSLFVALPGAQADGHDFLAKA 62

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
               A   +V T D+   +  + +P     D L AL  LAVA R R K  +IAITGSVGK
Sbjct: 63  ANADASAALVTTPDISIELAQIIVP-----DCLAALTALAVAGRNRFKGAMIAITGSVGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKEML   L +  +++A  G++NNHIG+PL+LA +P    F I E+GM+H GEI  LT
Sbjct: 118 TGTKEMLAHLLRACGQSHANEGNFNNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAKLT 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP IA+IT IA  H  +F  I+ IA+AKAEIFEG+   GT  LN DD FF  L   +
Sbjct: 178 RIARPDIAMITRIAAVHSGHFESIDAIANAKAEIFEGMHG-GTAVLNIDDPFFPHLSQAA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLM 298
            + GI  I +FG   +A+F L   +Q ++   +E  L G  +   H G+ G H A N L 
Sbjct: 237 KSAGISRIVTFGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVS-FHLGMSGQHWAMNSLG 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V  L  D   A  +L+ F    GRG  +    N    ++ID+SYNA+PASM AA++
Sbjct: 296 VLACVHALGEDPVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALA 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLA-L 414
                + H +   I VL DM E+G  S + H D+   ++     HV   G    H  A +
Sbjct: 356 PFLTGARHTD---IMVLSDMLELGSHSAAAHDDIVATVASIGPRHVIAIGDDFAHAFAKV 412

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  I    +   D L   +Q+     D + +K S   G +R+ N +L
Sbjct: 413 AHDCDVIIANDPAHATDMLARLVQAD----DTIFIKGSKGSGAWRVTNAVL 459


>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
 gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl ligase [Rickettsia typhi]
 gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
          Length = 448

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 233/435 (53%), Gaps = 12/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +   + F A++G   DGHD+I  A+ KGA  V+V+  +  +       +  
Sbjct: 23  NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   AL K+A+  R  SKA  IAITGSVGKT+TKE L I L      +A  G++NN++
Sbjct: 79  VNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNFNNYL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEI  L  +++P+IA+I+ I+ AHL  F+ IEEIA
Sbjct: 139 GLLINLASMADDTEYAIFELGMNHKGEISELVQILKPNIAMISNISEAHLEFFNSIEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF+   K     +N  ++ +  + +    L I  IYSFG+SK A  +L  +K   
Sbjct: 199 EAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYSFGRSK-ASAELIFYKTLG 257

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ  ++  +  K +++    I  H A N    L I+ IL  D++ A   L+     +GRG
Sbjct: 258 EQVHLKYYINNKFIDITIPFIPKHFANNYTGVLLIIDILGKDIEIAANYLADISITKGRG 317

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +N     +I + YNA+P SMKAA+  L Q+       + +++G+M E+G  SQ 
Sbjct: 318 E----IINIQNSRVICDYYNASPQSMKAALEYLKQVPADN---KTSIIGEMLELGWNSQR 370

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H +L   +     + V+L G +   + D LP  I   + + ++   + I       +++
Sbjct: 371 LHEELVPYILDSGCTKVYLIGAYTKYIYDLLPTKISKKFFKNVEEFIMHITDLFEYSELI 430

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 431 LIKGSRGVKLDKIVD 445


>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
           [Rickettsia prowazekii str. Madrid E]
 gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
           2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
           [Rickettsia prowazekii]
 gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           prowazekii Rp22]
          Length = 449

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 230/435 (52%), Gaps = 11/435 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  +S+ +   + F A++G   DGHD+I  A+ KGA  V+V+  +  +       +  
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKD---KIIL 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++   AL K+A+  R  SKA  IAITGSVGKT+TKE L I L      +A  G++NN++
Sbjct: 79  VNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNFNNYL 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ + LA M  D ++ IFELGM+H GEI  L  +++P+IA+I  I+ AHL  F  +EEIA
Sbjct: 139 GLLINLASMADDTEYAIFELGMNHQGEISELVQILKPNIAMINNISEAHLEFFHSLEEIA 198

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF+   K     +N  ++ +  + +    L I  IYSFG S  A  +L  +K   
Sbjct: 199 EAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYSFGHSSKASAKLILYKTLG 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ  ++  +  K +++    I  H A N    L I+ IL  D++ + K L+     +GRG
Sbjct: 259 EQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLIIDILGKDIEISAKYLADIALTKGRG 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           K     +N     +I + YNA+P SMKAA+  L Q+       + +++G+M E+G  SQ 
Sbjct: 319 K----IINIQNSRVICDYYNASPQSMKAALEYLKQVPADN---KTSIIGEMLELGWNSQR 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H +L   +     + V+L G +   + D LP  I   + + ++ L   I       +++
Sbjct: 372 LHEELVPYILDAGCTKVYLVGAYTKYIYDLLPNKISKKFFKNVEELITHITDLFEYSELI 431

Query: 448 VVKSSNSCGFYRLIN 462
           ++K S      ++++
Sbjct: 432 LIKGSRGVKLDKIVD 446


>gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
 gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
          Length = 502

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 155/514 (30%), Positives = 255/514 (49%), Gaps = 71/514 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L +A+    I I      N +  +S+ +   + F A+KG + DGHD++L A+ K
Sbjct: 2   IWNSETLSKAL---GITISNSINCNEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDAIDK 57

Query: 64  GAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V+   D+V         +  VDD   AL K+A+  R  SKA  IAITGSVGKT+
Sbjct: 58  GANAIIVSKHIDIVDKN-----KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTS 112

Query: 122 TKEMLTIALS-------------------------------------SIKKTY------- 137
           TK  L   L+                                     S + TY       
Sbjct: 113 TKGALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEVS 172

Query: 138 -------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                  A  G++NNH+G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT
Sbjct: 173 YIKGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 232

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++ AHL  F+ +E+IA AK EIFE   K     +N + + +  + +    L I  IY+F
Sbjct: 233 NVSEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYNF 292

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G S N   +L  +    +Q  ++ ++  K++E+    I  H A+N +  L I++IL  ++
Sbjct: 293 GASYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKNL 352

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+       
Sbjct: 353 DIAANHLANISPTKGRGE----MINIQNCCVICDYYNASPQSMKAALEYLKQVPAEN--- 405

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           + A++GDM E+G+ S++ H +L   +   + S V+L G +   + + LP  I   Y + +
Sbjct: 406 KTAIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIYNLLPFKIAKKYFKNV 465

Query: 431 DGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLIN 462
           D L   I  +    + +++++K S      ++++
Sbjct: 466 DELITHITVTDLFKNNELILIKGSRGIKLDKIVD 499


>gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 474

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 232/456 (50%), Gaps = 14/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           PLWT  ++  A  G   G V   F  NG++ +SR I P + F A+KG   DGHDF   A 
Sbjct: 7   PLWTAQEIAVATGGRIEGGV---FDANGLTYNSREIEPGDLFLALKG-ARDGHDFAASAF 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII-AITGSVGKT 120
             GA   +V   +         P   V D L AL  L  AAR R+      A+TGSVGKT
Sbjct: 63  AAGAAGALVERPVDGG------PCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +  + +   L      +A I SYNNHIGVPLTLARM   V+  +FE+GM+  GEI  L  
Sbjct: 117 SVTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMHPSVERAVFEIGMNAPGEIGPLAR 176

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +V+PH A +TT+ P H+  F+ G   +A+ KA IF+GL   G   +N D+ + ELL   +
Sbjct: 177 MVQPHAACVTTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGLAVINGDNPWVELLHQAA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G + + +FG     D +L  +    E + +  ++ G++        G+H   N L  
Sbjct: 237 LRAGAR-VATFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAV 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++  L   V+TA++AL+ F P +GRG+     L +G FTLIDESYNANP SMKA    
Sbjct: 296 ILMLDALDVPVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGFLS 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        GRR+ VL DM E+G+ S++ H  LA  +    I  V  +G  +  L DA+ 
Sbjct: 356 LGAKPVERRGRRVVVLTDMLELGDQSEALHAGLATAIEAAAIDVVHAAGPQMRHLYDAIS 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 ++ T   L           D+V+VK SN  
Sbjct: 416 PERRGVWAGTAAALADQAADLAGPDDIVMVKGSNGS 451


>gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 510

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 248/487 (50%), Gaps = 40/487 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   D+  A  G   G      V+G + DSR +   + F A+KG + DGH F+  A  K
Sbjct: 20  LWRAADIAAATGGKLGG--GDFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAFLK 77

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121
           GA   +V         +++ P   V D +  L  LA AAR R      +I +TGS GKT 
Sbjct: 78  GAAGALVEQ-------AVAHPHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGKTG 130

Query: 122 TKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
            KE L  AL  SS  + +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GE+  LT
Sbjct: 131 VKEALFAALDRSSRGRAHRSVKSYNNHVGVPLSLARMPARTRFGVFEMGMNHAGELSALT 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KA 237
            LVRPH+A++TTIAPAH+ +FSG   IA AKAEIFEGLE  G   +  D     LL   A
Sbjct: 191 RLVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEPGGVAIVPADSPHCALLVAHA 250

Query: 238 KSHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVH-----HGIGYH 291
           + HA     + +FG +++AD +L       +  + +  +   ++             G H
Sbjct: 251 QRHA---GLVITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAH 307

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYN 347
            A N L  +  V+ +  D+  A  AL+      GRG R+  A + G  +    LIDESYN
Sbjct: 308 WAANSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYN 367

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANPASM A I+ L         RR+AVLG M E+GE   ++H  LAE ++   I  V L 
Sbjct: 368 ANPASMSATIAALGATPAR---RRVAVLGAMRELGEGEAAYHAALAEPIAAAGIDRVVLV 424

Query: 408 GFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           G  + AL DAL ++           VH +   +       +    GD ++VK SNS G  
Sbjct: 425 GAEMAALADALGKNAQGALAAGFDMVHVATAAEAAECLAAAGPQGGDAILVKGSNSVGLG 484

Query: 459 RLINLLL 465
            L+  L+
Sbjct: 485 ALVKALI 491


>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
 gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
          Length = 490

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 245/470 (52%), Gaps = 23/470 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+++A  G  +       +   SIDSRS +    F  I G   D H FI  A++   
Sbjct: 28  TIKDIVEACSGQLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKING 87

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  D     G  + P   V D + A+ K+    R R    ++A+TGSVGKTTT+EM
Sbjct: 88  ATFTSEHDEPLE-GFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTREM 146

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L+S KK +  IG+ N+ IGVPLTL+ +  + +  + E+GMS  G+I  LT+++RP+
Sbjct: 147 ISTVLASQKKVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERGQIEKLTNMIRPN 206

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I  +H++     E I   K +I +GL + G +FLN DD F    + K   L  K
Sbjct: 207 VAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLAPYRGK---LSHK 263

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           T + +G  K  D++         Q+     + E ++  K MEVV   +G H  +N L+ L
Sbjct: 264 TFF-YGMDKACDYRAENVHVKDGQTIFHFFYKEGKVV-KDMEVVLGTMGEHNVRNALVAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   +  D+  A KAL  FH     G+R +    +   TLID++YNA+P SMKA++SVL
Sbjct: 322 GVAHQMGLDMKAAAKALVTFH-----GQRQQMHTLKS-CTLIDDTYNASPDSMKASVSVL 375

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKD 416
           S +    +GRRIA L DM E+GE  + +H ++ + ++   +  V     LS   +  ++D
Sbjct: 376 SSMEG-VKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEVAAYGELSEEILKGVED 434

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              R +  H+ E+ D L  ++ + +   DV+++K+SN      +    L+
Sbjct: 435 NNERIVVKHF-ESRDALKDYLLTYVHPDDVLLLKASNGMKLKEIAEAFLQ 483


>gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 948

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 231/442 (52%), Gaps = 15/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +   SI+S++I   + FFAIKG + DG+ ++  A Q GA LV+ N          S    
Sbjct: 510 IKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQ------KKSKKKI 563

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L  L + +   R    + II+ITGS GKT+ KE+L   LS I        S+NN 
Sbjct: 564 VVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPKSFNNK 623

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPL+L  +  + +FGIFE+GM   GEI +L+ +++P + VIT I+ AH+ NF  I ++
Sbjct: 624 FGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQV 683

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK+EI   ++  G + LN DD F+  L  K        I++F  K+K+A+  L K  +
Sbjct: 684 ALAKSEIINNIKTNGILVLNQDDRFYN-LHKKIAKKKNINIFTFSLKNKSANIYLEKIVK 742

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE- 324
              +  + V +  K +      I  +  +N+L T+ I+SI     DT     ++F   E 
Sbjct: 743 EKSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFK---DTQKLEKNIFLDYEI 799

Query: 325 --GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GRG   +  LN+    ++DESYN+NP S+K+AI    ++      +++ +L DM E+G
Sbjct: 800 AKGRGDIIKVKLNKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKKKL-ILSDMLELG 858

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S+  H++  + ++  ++ ++ + G H+L     L +       +    +   I++ L 
Sbjct: 859 NYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDLN 918

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           + D +++K SNS G   L+N L
Sbjct: 919 NNDYLMIKGSNSTGLNNLVNKL 940



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 107/477 (22%), Positives = 190/477 (39%), Gaps = 72/477 (15%)

Query: 16  GHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           G+ +  + + F N    G+S +S        FFAI+G   DG  FI HA++KGA  V+++
Sbjct: 4   GNFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGA-TVIIS 62

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 I +  +      +V   L++L+   +      +IA+TG+ GK++  +     L+
Sbjct: 63  EQKFEGIKN-KVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLN 121

Query: 132 SIKKTYACIGSY-----------NNHIGVPLTLARM-----PVDVDFGIFE-----LGMS 170
              K  A IG+            +N    P+ L+++        +D  I E     L  +
Sbjct: 122 LGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSHGLKQN 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDD 229
            L  ++F T        + T ++  HL       +   +K  +FE L K  GTI    D 
Sbjct: 182 RLDGLKFNT-------TIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIIT--DS 232

Query: 230 SFFELLKAKSHALGIK-TIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              E    K  +L  K  + +  KS N       Q R  KQ      +E++   K  ++ 
Sbjct: 233 KIPEYKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQI-----VEIKYNQKHYKLQ 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + IG    +N+ M +          D  +K  S      GR ++     N     L   
Sbjct: 288 INLIGKIQLKNLFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVIL--- 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            Y   P ++K   + L+ +    E +RI  V G  C  G   +     + ++ + Y    
Sbjct: 345 DYAHTPDALK---TCLTNLKEQFENKRIFIVFG--CG-GNRDKDKRPIMGKIANQY-CDR 397

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------IQSSLVD---GDVVVV 449
           V+L+  +    +D  P+ I +   +T+D   +F        I  +++D   GD++V+
Sbjct: 398 VYLTDDNP---RDENPKKIRLAIKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVI 451


>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
          Length = 457

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 241/474 (50%), Gaps = 42/474 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +A  G  I    +  +  I IDSR +   + F AI G   DGH+FI  AV+ GA
Sbjct: 5   TLAQIAEAASGKIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSAVENGA 64

Query: 66  GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTK 123
             V+V+      I   S + V  VDD   AL  +A   R++ K   I AITGSVGKT+TK
Sbjct: 65  KAVIVDR----QINDYSNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGKTSTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L+   KT    G+YNN IG+PLTL R+    +F + E+GMS  GEI  L  L R
Sbjct: 121 DMIAAVLAQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLAELAR 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT + PAH+     IE +A+AK E+ + L+K+GT  LNYD+ +   +    ++  
Sbjct: 181 PQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAENFNS-- 238

Query: 244 IKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +FG S  AD Q+   K+ +   +   ++  QGK ++   +  G H   N L  + 
Sbjct: 239 --KLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYLNKPGKHNIYNALAAI- 295

Query: 302 IVSILTADVDTAIKALSVFHPK---EGRGK------RYRCALNQGFFTLIDESYNANPAS 352
                      AI  L+  +PK   +G  K      R      +    +I++SYNANP S
Sbjct: 296 -----------AIGFLNNMNPKGIQDGLSKIDFSDLRMEIKELENGAIVINDSYNANPIS 344

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
           ++AA+ VL+++      R+IAVL  M E+G++ +  H+++ E ++  NI  +   G    
Sbjct: 345 VRAALDVLAEMKGK---RKIAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLITVGEIAE 401

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                A + A+P      +++    L  F++ +L   D++++K S S    +++
Sbjct: 402 LIAEGAERTAMPVEKIYSFADKASTL-KFLKDNLKKDDLLLIKGSRSNQMEKIV 454


>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
          Length = 446

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++GP++D +DFI  A ++GA   VVN  +       ++P+  V 
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNRAV-----KTTLPLICVS 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +     I +TGS GKTTT+ +L           A   S+NN+IGV
Sbjct: 80  DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D  + + ELG +H GEI +LT L +P +A+IT   P HL  F  +E +A A
Sbjct: 140 PLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EIFEGL   GT  +N DD F E  +  +H+   + I SFG ++ AD   +     S+ 
Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRPLAHS---RRIISFGINQPADVMAKNITLNSDG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326
           +   ++ L    +E+    IG H   N L             D     L    P +GR  
Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K YR A+      +ID+SYNANP S+ AAI+VL++   H     + VLGDM E+G+ +
Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + FH ++ +      +  ++  G       +A  ++   H+ +  + L   +++ L    
Sbjct: 367 EQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK S S     + + LLEE
Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446


>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
 gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 446

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++GP++D +DFI  A ++GA   VVN      +   ++P+  V 
Sbjct: 25  VSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLICVS 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +     I +TGS GKTTT+ +L           A   S+NN+IGV
Sbjct: 80  DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D  + + ELG +H GEI +LT L +P +A+IT   P HL  F  +E +A A
Sbjct: 140 PLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EIFEGL   GT  +N DD F E  +  +H+   + I SFG ++ AD   +     S+ 
Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326
           +   ++ L    +E+    IG H   N L             D     L    P +GR  
Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K YR A+      +ID+SYNANP S+ AAI+VL++   H     + VLGDM E+G+ +
Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + FH ++ +      +  ++  G       +A  ++   H+ +  + L   +++ L    
Sbjct: 367 EQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK S S     + + LLEE
Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446


>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
 gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
          Length = 446

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++GP++D +DFI  A ++GA   VVN      +   ++P+  V 
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLIFVS 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +     I +TGS GKTTT+ +L           A   S+NN+IGV
Sbjct: 80  DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D  + + ELG +H GEI +LT L +P +A+IT   P HL  F  +E +A A
Sbjct: 140 PLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EIFEGL   GT  +N DD F E  +  +H+   + I SFG ++ AD   +     S+ 
Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326
           +   ++ L    +E+    IG H   N L             D     L    P +GR  
Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K YR A+      +ID+SYNANP S+ AAI+VL++   H     + VLGDM E+G+ +
Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + FH ++ +      +  ++  G       +A  ++   H+ +  + L   +++ L    
Sbjct: 367 EQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK S S     + + LLEE
Sbjct: 425 VVLVKGSFSMRMGNIAHALLEE 446


>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
 gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
          Length = 446

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++GP++D +DFI  A ++GA   VVN      +   ++P+  V 
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLIFVS 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +     I +TGS GKTTT+ +L           A   S+NN+IGV
Sbjct: 80  DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D  + + ELG +H GEI +LT L +P +A+IT   P HL  F  +E +A A
Sbjct: 140 PLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EIFEGL   GT  +N DD F E  +  +H+   + I SFG ++ AD   +     S+ 
Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326
           +   ++ L    +E+    IG H   N L             D     L    P +GR  
Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K YR A+      +ID+SYNANP S+ AAI+VL++   H     + VLGDM E+G+ +
Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + FH ++ +      +  ++  G       +A  ++   H+ +  + L   +++ L    
Sbjct: 367 EQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK S S     + + LLEE
Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446


>gi|71082737|ref|YP_265456.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 948

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 230/442 (52%), Gaps = 15/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +   SI+S++I   + FFAIKG + DG+ ++  A Q GA LV+ N          S    
Sbjct: 510 IKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQ------KKSKKKI 563

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L  L + +   R    + II+ITGS GKT+ KE+L   LS I        S+NN 
Sbjct: 564 VVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPKSFNNK 623

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPL+L  +  + +FGIFE+GM   GEI +L+ +++P + VIT I+ AH+ NF  I ++
Sbjct: 624 FGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQV 683

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK+EI   ++  G + LN DD F+  L  K        I++F  K+K+A+  L K  +
Sbjct: 684 ALAKSEIINNIKTNGILVLNQDDRFYN-LHKKIAKKKNINIFTFSLKNKSANIYLEKIVK 742

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE- 324
              +  + V +  K +      I  +  +N+L T+ I+SI     DT     ++F   E 
Sbjct: 743 ERSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFK---DTQKLEKNIFLDYEM 799

Query: 325 --GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GRG   +  L +    ++DESYN+NP S+K+AI    ++      +++ +L DM E+G
Sbjct: 800 TKGRGDIIKVKLKKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKKKL-ILSDMLELG 858

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S+  H++  + ++  ++ ++ + G H+L     L +       +    +   I++ L 
Sbjct: 859 NYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDLN 918

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           + D +++K SNS G   L+N L
Sbjct: 919 NNDYLMIKGSNSTGLNNLVNKL 940



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 191/477 (40%), Gaps = 72/477 (15%)

Query: 16  GHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           G+ +  + + F N    G+S +S        FFAI+G   DG  FI HA++KGA  V+++
Sbjct: 4   GNFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGAT-VIIS 62

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 I +  +      +V   L++L+   +      +IA+TG+ GK++  +     L+
Sbjct: 63  EQKFEGIKN-KVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLN 121

Query: 132 SIKKTYACIGSY-----------NNHIGVPLTLARMPVD-----VDFGIFE-----LGMS 170
              K  A IG+            +N    P+ L+++  D     +D  I E     L  +
Sbjct: 122 LGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSHGLKQN 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDD 229
            L  ++F T        + T ++  HL       +   +K  +FE L K  GTI    D 
Sbjct: 182 RLDGLKFNT-------TIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIIT--DS 232

Query: 230 SFFELLKAKSHALGIK-TIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              E    K  +L  K  + +  KS N       Q R  KQ      +E++   K  ++ 
Sbjct: 233 KIPEYKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQI-----VEIKYNQKHYKLK 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + IG    +N+ M +          D  +K  S      GR ++     N     L   
Sbjct: 288 INLIGKIQLKNLFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVIL--- 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            Y   P ++K   + L+ +    E +RI  V G  C  G   +     + ++ + Y    
Sbjct: 345 DYAHTPDALK---TCLTNLKEQFENKRIFIVFG--CG-GNRDKDKRPIMGKIANQY-CDR 397

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------IQSSLVD---GDVVVV 449
           V+L+  +    +D  P+ I +   +T+D   +F        I  +++D   GD++V+
Sbjct: 398 VYLTDDNP---RDENPKKIRLAIKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVI 451


>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
 gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
          Length = 446

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++GP++D +DFI  A ++GA   VVN      +   ++P+  V 
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLICVS 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +     I +TGS GKTTT+ +L           A   S+NN+IGV
Sbjct: 80  DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D  + + ELG +H GEI +LT L +P +A+IT   P HL  F  +E +A A
Sbjct: 140 PLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EIFEGL   GT  +N DD F E  +  +H+   + I SFG ++ AD   +     S+ 
Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326
           +   ++ L    +E+    IG H   N L             D     L    P +GR  
Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K YR A+      +ID+SYNANP S+ AAI+VL++   H     + VLGDM E+G+ +
Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + FH ++ +      +  ++  G       +A  ++   H+ +  + L   +++ L    
Sbjct: 367 EQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK S S     + + LLEE
Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446


>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
 gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
          Length = 463

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 226/445 (50%), Gaps = 25/445 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R IA  + F A++G ++DGHD++  A + GA   VV+     +  S+ +P   V
Sbjct: 30  GVSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDK----ADPSMGLPQIRV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D + AL +LA+A R  S A  +AITGS GKTT +EM+   LS +  T A  G+ NNHIG
Sbjct: 86  SDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVGNTLATEGNLNNHIG 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  +   G  ELG S LGEI    ++VRP + ++T    AHL  F G + +  
Sbjct: 146 VPLTLFRLSPEHQLGAIELGASGLGEIAHTVNIVRPEVVILTNAGQAHLEGFGGYDNVVR 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI +G  +TG + LN DD  F+L + ++    +  + S   S+ AD+         +
Sbjct: 206 AKGEIIDGAPETGLVVLNSDDPAFDLWRQRAGQRRVAGV-SGRASEGADYVPNDIHSDGD 264

Query: 269 QSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGR 326
                 Q   G S +V     G H   N L+ +     L AD + AIKA L+   P +G 
Sbjct: 265 VRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAARELGAD-NEAIKAGLAALKPVKG- 322

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +  +     T+ID+SYNANPASMKAA+ VL+         R+AVLG M E+G+ S 
Sbjct: 323 --RLQMMVLTPKLTVIDDSYNANPASMKAALDVLAARPAS----RVAVLGAMAELGQDSL 376

Query: 387 SFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + H ++ E      I  +   G     +V    DA    +   + + +  LF        
Sbjct: 377 ALHREIGEFARARGIERLIAVGPGCEGYVEGFGDAA--EVCASHDDAVRRLF----EGPA 430

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           +   V+VK S S    R++  + E+
Sbjct: 431 ESQTVLVKGSRSSAMDRVVEGIQEK 455


>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
 gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
          Length = 456

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 224/453 (49%), Gaps = 36/453 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+S DSR +A  + F  + G  ++GH F   A Q+G   V+ N            PV
Sbjct: 26  LIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRSEPNP--PEGKPV 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD L AL KLA A R +    ++ +TGS GKTTTK+M+   L +  K +   G+YNN
Sbjct: 84  ILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTEGNYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  MP D +  I E+GMS  GEI FLT L RP IAVIT I  +HL      E 
Sbjct: 144 HIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           IA AK EI  GL K GT+    D+    E L    +        +FG+    D+QL    
Sbjct: 204 IAEAKLEIVNGLSKEGTLIYVGDEPLLTERLNQPPY-----DTKTFGEDPAFDYQLEDMT 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLG---IVSILTADVDTAIKA 316
           Q  E +   V+        + +G     +G H  +N L  +    ++++  A +   +  
Sbjct: 259 QTEEGTAFRVR-------GIENGFFIPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTK 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L V       G R           +I+++YNA+P SMKAAI ++ Q+   G G++I VLG
Sbjct: 312 LKV------TGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQMK--GYGKKILVLG 363

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDAL---PRSIHVHYS-ETMD 431
           DM E+GE  ++FH ++ + ++  +I  ++  G       K AL   P    +H++ E  D
Sbjct: 364 DMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPEHRVLHFNPEEKD 423

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            L   ++     GD+++VK+S       +I  L
Sbjct: 424 SLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 456


>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 446

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 224/442 (50%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++GP++D +DFI  A ++GA   VVN      +   ++P+  V 
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLICVS 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +     I +TGS GKTTT+ +L           A   S+NN+IGV
Sbjct: 80  DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D  + + ELG +H GEI +LT L +P +A+IT   P HL  F  +E +A A
Sbjct: 140 PLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EIFEGL   GT  +N DD F E  +  +H+   + I SFG ++ AD   +     SE 
Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSEG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326
           +   ++ L    +E+    IG H   N L             D     L      +GR  
Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVSVKGRLV 316

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K YR A+      +ID+SYNANP S+ AAI+VL++   H     + VLGDM E+G+ +
Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + FH ++ +      +  ++  G       +A  ++   H+ +  + L   +++ L    
Sbjct: 367 EQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK S S     + + LLEE
Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446


>gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
 gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 231/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ NF     IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H ++A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 TNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 1313]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 240/464 (51%), Gaps = 22/464 (4%)

Query: 8   HDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++++A+ G  I G V   F N IS DSR+I   + F  + G  +DGH++I  A++ GA 
Sbjct: 7   EEVVKAVGGTLISGEVNTVFYN-ISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGAL 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   +     G + I V    D L AL  LAV  R + K   + ITGSVGKT+TKEM+
Sbjct: 66  GSLTQKETEPFPGKVLIKV---SDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMV 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   K     G++NN IGVPLT+  +    +  + E+GMS  GEI  LT +V+P I
Sbjct: 123 AAVLSKGFKVLKNQGNFNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDI 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I  +H+        I  AK EIFEGL + G   LN DD   +LL   ++ L  +T
Sbjct: 183 AIITNIGVSHIEKLGSKNNILKAKMEIFEGLNEKGLAILNGDD---KLLYGLNNLLKFRT 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++ +G  +  D +    +   E+ S  +++++GK   V     G H   N L  + +   
Sbjct: 240 VF-YGMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIE 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +  ++ +  F P    GK     +N     +I+++YNA+P SM+AAI VL  IS 
Sbjct: 299 LGIPPEKIVEGIEEFSP----GKMRLDIINYNGLKIINDAYNASPQSMEAAIDVLKDIS- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----VLALKDALPRS 421
            GEGR  AVLGDM E+GE S+S H+++ +  +   I ++   G +    V    +A  + 
Sbjct: 354 -GEGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGEYRSNIVRGAVEAGAKE 412

Query: 422 IHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V  + + MD    F++  +  GDV++VK S       ++N+L
Sbjct: 413 EKVFEFKDNMDAA-KFLKEFVKSGDVLLVKGSRGMKMEEIVNIL 455


>gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0031]
          Length = 474

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+ Y I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580]
 gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580]
          Length = 491

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 224/453 (49%), Gaps = 36/453 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+S DSR +A  + F  + G  ++GH F   A Q+G   V+ N            PV
Sbjct: 61  LIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRSEPNP--PEGKPV 118

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD L AL KLA A R +    ++ +TGS GKTTTK+M+   L +  K +   G+YNN
Sbjct: 119 ILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTEGNYNN 178

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  MP D +  I E+GMS  GEI FLT L RP IAVIT I  +HL      E 
Sbjct: 179 HIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREG 238

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           IA AK EI  GL K GT+    D+    E L    +        +FG+    D+QL    
Sbjct: 239 IAEAKLEIVNGLSKEGTLIYVGDEPLLTERLNQPPY-----DTKTFGEDPAFDYQLEDMT 293

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLG---IVSILTADVDTAIKA 316
           Q  E +   V+        + +G     +G H  +N L  +    ++++  A +   +  
Sbjct: 294 QTEEGTAFRVR-------GIENGFFIPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTK 346

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L V       G R           +I+++YNA+P SMKAAI ++ Q+   G G++I VLG
Sbjct: 347 LKV------TGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQMK--GYGKKILVLG 398

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDAL---PRSIHVHYS-ETMD 431
           DM E+GE  ++FH ++ + ++  +I  ++  G       K AL   P    +H++ E  D
Sbjct: 399 DMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPEHRVLHFNPEEKD 458

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            L   ++     GD+++VK+S       +I  L
Sbjct: 459 SLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 491


>gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
          Length = 455

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 221/452 (48%), Gaps = 30/452 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I P   +  +  DSRSI PQ  F A+KG  +DGHDF   AV+ GA  ++V  ++      
Sbjct: 18  IGPDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHEL-----P 72

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L +P   V D   A+ ++    R   +   IA+TGS GKT+ KEM+   LS   K     
Sbjct: 73  LDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVLYTA 132

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NN IGVPLTL R+    +FG+FELG +H GEI + + LV+P +A++  +A AHL  F
Sbjct: 133 GNFNNEIGVPLTLLRLEEGDEFGVFELGANHRGEIDYTSSLVKPDVALVNNVASAHLEGF 192

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +  +A+AK+EIF  L   GT  +N DDSF  ++K    A       +F     AD Q 
Sbjct: 193 GSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMK---EAASEHKQLTFAIEAAADLQG 249

Query: 261 RKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                    + C + S++      + + V     G H   N L   GI   L   +   +
Sbjct: 250 SGLEPDLLGRYCFKMSYLN-----QEVSVTLPLSGRHQVSNALAAAGICLTLGLPLSEIV 304

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             LS+  P +GR          G   +ID+SYNANPAS+ AAI  L +I    +G R  V
Sbjct: 305 SGLSLLEPVKGR----MLPTQLGRVRVIDDSYNANPASVSAAIDWLQEI----DGYRCLV 356

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGD+ E+G+ +   H +L E+  +  I  ++  G        A     H    + ++ L 
Sbjct: 357 LGDLGELGDNASLLHTELGELAKIRGIEALFSLGELSANASTAFGGVHHQELEQVVNNLV 416

Query: 435 LFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465
             I    + GDV V+VK S S    R++  L+
Sbjct: 417 NHINQ--LQGDVTVLVKGSRSAKMERVVEALI 446


>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
 gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
          Length = 444

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 226/443 (51%), Gaps = 26/443 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GIS+DSRSI P E F A++G  YDGH ++  A Q GA   VV       +    +P+  V
Sbjct: 23  GISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHGAAAAVVE-----EVIETDLPLVLV 77

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   AL +LA   R +    II +TGS GKTTT+EM+   L+ +    A   ++NN IG
Sbjct: 78  EDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTREMIRSILAEMGPVLANFKNFNNAIG 137

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PLTL  +  +  + + E+G +H GEI +LTH+ +P IA+IT I PAHL  F  I  +A 
Sbjct: 138 LPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQPDIALITNIGPAHLQGFGSILRVAE 197

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QC 266
           AKAEIF GL + G   LN  D+  ++L+  S         +FG ++N DF  R+ +  + 
Sbjct: 198 AKAEIFSGLAQKGVAILNAADNHRDILEKASAQY---RRVNFGLTQNCDFYARQIQLDKT 254

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +++ V   G+ + +  +  G H   N L    +   +  +       L    P  GR
Sbjct: 255 GRPTFLLVS-SGEEIIIRLNLSGQHHVMNALAAAAVARQVGVEFSVIQSGLEKMQPLSGR 313

Query: 327 GKRYRCALNQGF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                  +N+      TLID+SYNANP+S+ AA+ +L+    H +G RI VLGDM E+G+
Sbjct: 314 ------VINRTTKTGATLIDDSYNANPSSVAAALKLLA----HYKGLRILVLGDMSELGK 363

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            + ++H  + E+     I  V+  G   L+ + A     H  +      L L ++  +  
Sbjct: 364 SAGAYHRQMGELAKALTIDKVYTCGD--LSEETAKAFGAHGKHYSNHQKLILALKPDVQK 421

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
              +++K S +    ++   L++
Sbjct: 422 NVTILIKGSRNAQMEKVAAALMD 444


>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 459

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 233/451 (51%), Gaps = 17/451 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+ +AI+G+ I   P   + G+S++SR     + FFA+KG  +DGHDF+  A++ GA   
Sbjct: 7   DIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGALAA 66

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+  +    G     +  V DV  AL  LA   R R K  ++ +TGSVGKTTTK++   
Sbjct: 67  VVSRPVSLPQGLGERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLTAT 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L +  +T    G+YNN IGVPLTL R+    +  + E+ M +LGEI  L  +  P   +
Sbjct: 127 CLEARFQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELASIALPTCGI 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  + P HL N   +E IA AK E+F+ +++ G + +N D+    LL   +    +K + 
Sbjct: 187 IVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNP---LLVEAAEKYAVKKV- 242

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            FG   N D +L      SE++ ++  L G++ E      G H+A N++   G+   L  
Sbjct: 243 RFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFCLPFPGSHLAYNVIAAAGVAVRLGV 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D+      +  F P     +R       G  T+ID+ YNANP SMKA + VLS ++    
Sbjct: 303 DLADIQSKIRSFSPS---SRRLNIKTGLGGITIIDDCYNANPVSMKAGLEVLSDVAA--- 356

Query: 369 GR-RIAVLGDMCEMGELSQSFHIDL---AEVLSLYNISHVWLSGFHV-LALKDA-LPRSI 422
           GR R+AVLGDM E+G      H ++   A  L +  +  V     H+  A K+A L +  
Sbjct: 357 GRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGELARHIGEAAKEAGLDKER 416

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +H+S+  +    +++S L    VV++K+S 
Sbjct: 417 ILHFSDK-ELAIAYLKSDLPAEAVVLIKASR 446


>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
 gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
          Length = 454

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 230/451 (50%), Gaps = 31/451 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I+ +  + GIS DSR I P E F A++G  +DGH+F   AV+KGA  ++++  + + + +
Sbjct: 24  IISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGATALILDKKL-SVLST 82

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             IP F V++ L A  ++A   R + +  IIA+TGSVGKTTTKE++   LS+  K +  I
Sbjct: 83  NEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELIAAVLSTAGKVHKSI 142

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YNN IGVP TL  +     +G+ E+ M   GEI  LT + RP I VIT +  AH+   
Sbjct: 143 GNYNNEIGVPKTLLELDHTHHYGVIEMAMRAKGEISLLTEITRPTIGVITNVGTAHIGRL 202

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E IA AK E+   + +     LN+D+S             ++T  +F + K   + L
Sbjct: 203 GSQEAIAEAKCELLAQMSQDSIAILNHDNSLL-----------LETASTFWQGKTITYGL 251

Query: 261 RKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  +  +   ++++GK   +     G H A N L  L +  +L  D     + L+V
Sbjct: 252 EGGDLSGQLINPQTLRVEGKEFPLPLP--GRHNALNYLAALAVAKVLDLDWTPLTEGLTV 309

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  GR +R++   N     ++DE+YNA   SM AA+ +L +       R IAVLG M 
Sbjct: 310 NLPS-GRSRRHQLPNN---ILILDETYNAGLESMLAALQLLKETPGK---RHIAVLGTMK 362

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLF 434
           E+GE S  FH  + + +    I H+ +        H+ A  D +  S    + E ++   
Sbjct: 363 ELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAGADGVATSCFKTHQEVVN--- 419

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++Q  +  GD ++ K+SNS    R++N L+
Sbjct: 420 -YLQGLIKSGDRILFKASNSVELNRVVNDLI 449


>gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Enterococcus sp. 7L76]
          Length = 457

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H ++A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 TNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 466

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/450 (31%), Positives = 236/450 (52%), Gaps = 17/450 (3%)

Query: 4   LWTFH--DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + TF+  DL++ + G  +   P    NG+SIDSR+I   E +FA++G  YDGHDFI  A+
Sbjct: 1   METFYLKDLMRVVGGKFVKGNPGFSANGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAI 60

Query: 62  QKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVG 118
            KGA  VV + D +  + S   S+ +   +D L +L + A + R + K+  IA ITGS G
Sbjct: 61  NKGAAAVVCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+L    +   +T +  G++NN IG+PL++  +  D+++ +FE+G S  GEI+ L
Sbjct: 121 KTTTKEILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLRGEIKIL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + ++ P   +IT +  +HL  F   + +   K  +F+ +++TG I +N DD F  L+ A 
Sbjct: 181 SDILNPDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEF--LMTAP 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +    + I +F     AD   +  K  S +   E+  +G S+++     G     N L 
Sbjct: 239 QYVS--RKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +         +D     +  F P + R +      +     LI+++YNANP+SMK AI 
Sbjct: 297 AVACAIGFGFSLDEIKCGIENFMPPKMRMETLVTGTD---VVLINDAYNANPSSMKKAIQ 353

Query: 359 VLSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            + Q      G++I  VLGDM E+G+ S  +H +L + ++ +++S V L G      K+A
Sbjct: 354 AVLQ---SYSGKKINLVLGDMLELGDKSADYHSELGKFINAHDVSSVHLLGEMSFYTKEA 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           L  + +V +S   D L   ++    + D V
Sbjct: 411 L-NTKNVFHSRNSDSLLTQLKQIPAEDDCV 439


>gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2141]
 gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0645]
          Length = 474

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0012]
          Length = 474

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVESSNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 457

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
 gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
          Length = 454

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 232/470 (49%), Gaps = 27/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    ++L+  + + + I  +  V GI+ DSR I+  E F A++G ++DG++F   AV+K
Sbjct: 7   LKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAVEK 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+ + V  I S +IP F V D L A  K+A   R +    +IA+TGSVGKTTTK
Sbjct: 67  GAIAIIVDRE-VPVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS   K +    +YNN IGVP TL  +    D+ + E+ M   GEI  LT + R
Sbjct: 126 ELIAAVLSQRGKVHKTRANYNNEIGVPKTLLELDKSHDYAVIEMAMRAKGEIALLTEIAR 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT +  AH+      E IA+AK E+ E +       LN+D+              
Sbjct: 186 PTLGIITNVGTAHIGRLGSTEAIAAAKCELLEQMSPDTIAILNHDNPLL----------- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTL 300
           I+T +   + +   + L       +     +  Q   +E ++  +   G H A N L  L
Sbjct: 235 IETAHKVWQGETLTYGLEGGDLVGQL----IDAQTLRVEGINFPLPIPGRHNALNYLAAL 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L  D     + L+V  P  GR +R++   +     L+DE+YNA   SM AA+ +L
Sbjct: 291 AVAKVLNLDWTPLTEGLTVNLPS-GRSRRHQLPND---VLLLDETYNAGLESMIAALELL 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
            Q       R IAVLG M E+G+ S  FH  + E +   NI H+ +      A + A+  
Sbjct: 347 KQTPGQ---RHIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLTDDPQAQEIAVGA 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             +     +T   L   +Q  +  GD ++ K+SNS G  R++  LL + P
Sbjct: 404 DGVTTQCWQTHQALVQQLQEMIKPGDRILFKASNSVGLNRVVESLLNDQP 453


>gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1346]
          Length = 474

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I   + F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4000]
 gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0017]
 gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0027]
 gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4244]
 gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0312]
 gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1302]
 gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1341]
 gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309B]
 gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309A]
 gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1467]
          Length = 474

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
 gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
          Length = 474

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYTP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2137]
          Length = 474

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAKLTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0043]
 gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF]
          Length = 474

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
 gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
          Length = 457

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYTP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAKLTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
 gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
          Length = 474

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 222/439 (50%), Gaps = 19/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR +   + F AIKG H+DG+ F+  A+  GA  V+      +SI   S  V  V 
Sbjct: 30  ITTDSRKVKQGDLFIAIKGEHFDGNHFVDMALDNGAVAVL------SSISHKSPRVITVP 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + AL KLA   R      +I+ITGS GKTTTK+M+  AL+S    Y   G++NN IG+
Sbjct: 84  DTVKALGKLASGYRDMLDIPVISITGSSGKTTTKDMIFYALNSQCNAYRTEGNFNNEIGM 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+     + D  I E+GMS LGEI +L  + +P+I VIT I  AHL      E+I  A
Sbjct: 144 PLTILNSDEEHDVMILEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQEKIFEA 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   + +   + +N +D F   L    +   IKT   FG S + D+  + +    + 
Sbjct: 204 KMEITSFMHEKDILLVNGEDKFLRNLDKDVYQPMIKT---FGFSNSCDYFCKNYDYREDS 260

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +   + G  +      +G H   N L  LG+ S+L  D+  A K+L  F P + R + 
Sbjct: 261 TDICAMIDGLEVNYTIPSLGKHNILNSLAALGVASVLQMDLQKAAKSLIDFQPSKLRMQI 320

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +    +   T+I++SYNANP S+K+ +S+L++       RRIA+LGDM E+G  S  +H
Sbjct: 321 EK----KDGITIINDSYNANPDSVKSVLSILAE---KNNVRRIAILGDMLELGRDSDKYH 373

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDV 446
             + E  +      + +  F     + AL   +   +     T +     I+  +  GDV
Sbjct: 374 RQIGECAAHSCDILIGIGMFSDYMREGALEHGMDEGFCYSFRTQEESVTTIKDIMRVGDV 433

Query: 447 VVVKSSNSCGFYRLINLLL 465
           V++K S      +LI+L+ 
Sbjct: 434 VLLKGSRGMAMEKLIDLIF 452


>gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 457

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0630]
          Length = 474

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +       F + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
 gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
          Length = 455

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/438 (33%), Positives = 218/438 (49%), Gaps = 20/438 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     F A+KG  +DGHDF   AV+ GA  ++V+ ++      L+I    V 
Sbjct: 27  VSSDSRVIPEHTLFVALKGEKFDGHDFANMAVENGATALLVDHEL-----PLNIAQLIVK 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A+  L    R   +   +A+TGS GKT+ KEM+   LS   K     G++NN IGV
Sbjct: 82  DTQKAMGDLGAYLRELIQPKSVALTGSNGKTSVKEMVATILSQRHKVLYTAGNFNNEIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D +FG+FELG +H GEI + + LV+P +A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLEADDEFGVFELGANHQGEIDYTSSLVKPDVALVNNVASAHLEGFGSLAGVACA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+EIF  L  TGT  +N DD F  ++ + S +    T  +FG    AD Q    +  S  
Sbjct: 202 KSEIFNHLAATGTAVINADDQFASVMLSASMSF---TQLTFGVESEADIQASDLEADSVG 258

Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +  ++    +S+ +     G H   N L    I       +D     LS+  P +GR  
Sbjct: 259 CYRFKLSYMQESVLIALPLSGRHQVSNALAATAICLSFGLTLDEIKLGLSLLLPVKGR-- 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                   G   +ID+SYNANPAS+ AAI  L +I    EG R  VLGD+ E+G+ +   
Sbjct: 317 --MLPTQLGRVRVIDDSYNANPASVTAAIDWLQEI----EGHRCLVLGDLGELGDNASLL 370

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-V 447
           H +L E++    +  ++  G        A     H+     ++ L   I+   + GDV V
Sbjct: 371 HTELGELIKQRGLDSLFTLGELSANASRAFGVDGHISLERLVEDLIKNIKQ--LQGDVTV 428

Query: 448 VVKSSNSCGFYRLINLLL 465
           +VK S S    R++  L+
Sbjct: 429 LVKGSRSAKMERVVEALI 446


>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
          Length = 493

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 206/409 (50%), Gaps = 14/409 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WT  ++++A  G ++    +    G+SIDSR+IA  E F AIKG ++DGH F    V++G
Sbjct: 7   WTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAFAEAVVEQG 66

Query: 65  AGLVVVNTD-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              +V+N       +   + +  +    VD+   AL  LA   R R+  +++AITGS GK
Sbjct: 67  IKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVVAITGSNGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEM    +S    T +  G+ NN IG+PLTL ++     + + ELGM+H GEI  L 
Sbjct: 127 TSTKEMANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGMNHPGEIARLA 186

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I +IT I   HL     IE + +AK E+ +G++  GT  LN DD     L  K+
Sbjct: 187 EICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADDERVMCLARKT 246

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + +  FG S+NA  +    +     +   ++L   S+ V  +  G  M  N L  
Sbjct: 247 ----TRNVIYFGLSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMVSNALAA 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +  +L          L  F P +G   R      Q   T+ID+SYNANP SM+AAI  
Sbjct: 303 ASVGYLLNLSAQEIKSGLENFAPVKG---RMNITTLQNGVTIIDDSYNANPDSMEAAIKS 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           L+ +   G+ R   V GDM E+G  S++ H  + E+ +   I  ++ +G
Sbjct: 360 LAGL--KGKNRGALVAGDMLELGIYSETLHKKIGELCAECGIERLYATG 406


>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
 gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 234/465 (50%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +       +  I I+S+     + F  I G   DGH FI  A+Q  A
Sbjct: 45  TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESALQVAA 104

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    D V       I V   DD + AL  +    R R    ++A+TGSVGKTTT+EM
Sbjct: 105 ATLTSEHDNVVVSDKAYIRV---DDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 161

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T A+S+  K +   G+YN+  G P+T++RM  + D  + ELG+   GE+  LT + +P 
Sbjct: 162 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDAAVLELGIGEPGEMDILTDIAQPD 221

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+TTI  AH+     +E     K  I +G+ K GT+++N DD     +K +       
Sbjct: 222 ICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGTLYINGDDPMLYAVKDEIPC---- 277

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
            +Y++G  +  DF+    +     S  ++ + G  +  V  G+ G H  +N L+ + +  
Sbjct: 278 KVYTYGCGEGMDFRATNIRMEDGYSIYDM-VHGDDVVTVKVGVMGLHNVRNSLVAMAVSH 336

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    + + KA   F     RG R +     G +T+ID++YNA+P SMKA+  VL  + 
Sbjct: 337 QLGVPYEKSSKAFENF-----RGLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMK 391

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              EGR+  VLGDM E+G+ S  +H ++ E L    I  V + G H   +K+AL      
Sbjct: 392 C--EGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVIGEHAQKIKEALDEC-DT 448

Query: 425 HYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y++T+     + + +++ + +   D+V++K+SN      ++N+L
Sbjct: 449 KYAKTVSFTDTEEIAIYLMALMKPEDIVLLKASNGMNLSEVVNIL 493


>gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1342]
          Length = 474

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ +LA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVINEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYVP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Coprococcus sp. ART55/1]
          Length = 455

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 234/465 (50%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +       +  I I+S+     + F  I G   DGH FI  A+Q  A
Sbjct: 5   TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESALQTAA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    D V       I V   DD + AL  +    R R    ++A+TGSVGKTTT+EM
Sbjct: 65  ATLTSEHDNVVVSDKAYIRV---DDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T A+S+  K +   G+YN+  G P+T++RM  + D  + ELG+   GE+  LT + +P 
Sbjct: 122 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDVAVLELGIGEPGEMDILTDIAQPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VITTI  AH+     +E     K  I +G+ + GT+++N DD     +K +       
Sbjct: 182 ICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGTLYINGDDPMLYAVKDEIPC---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
            +Y++G  +  DF+    +     S  ++ + G  +  V  G+ G H  +N L+ + +  
Sbjct: 238 KVYTYGCGEGMDFRATNIRMEDGYSVYDM-VHGDDVVTVKVGVMGLHNVRNSLVAMAVSH 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    + + KA   F     RG R +     G +T+ID++YNA+P SMKA+  VL  + 
Sbjct: 297 QLGVPYEKSSKAFENF-----RGLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              EG++  VLGDM E+GE S  +H ++ E L    I  V + G H   +K+AL  +   
Sbjct: 352 C--EGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVIGEHAQKIKEALD-ACDT 408

Query: 425 HYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y++T+     + + +++ + +   D+V++K SN      ++N+L
Sbjct: 409 KYAKTVSFTDTEEIAIYLMALMKPEDIVLLKGSNGMKLSEVVNIL 453


>gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 457

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +       F + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 459

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/471 (31%), Positives = 242/471 (51%), Gaps = 25/471 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A  G  I    +  V+ IS D+R+I   E F A+KG  +DGHDF+  A+ KG 
Sbjct: 6   TVEDILEATNGVLIKGDIREKVDSISTDTRNINEDEVFIALKGEKFDGHDFVKDAILKGV 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++++ + +A  G+  I V  V D L AL  +A   R + K  +I +TGS GKTTTK +
Sbjct: 66  KGIIISRE-IAVEGN--IFVIRVQDTLKALQDIANYYRRKLKTKVIGVTGSSGKTTTKNL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS + KTY    ++NN IGVPL++     DVDF + E+ M + GEI  L+ +  P 
Sbjct: 123 IGKLLSIVGKTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEISLLSKIAEPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSHA 241
           I VIT I  AH+      E I  AKAEIFE +++ G   LN DD F    +E LK K   
Sbjct: 183 IGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRIYEKLKIKK-- 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTL 300
                 Y+FG  + +D +    ++  E   +++    GK +++       ++ +N+L++L
Sbjct: 241 ------YTFGFDERSDLRGEIVEKNEENYLLKINFPDGKDIKLSLPIYPLNIYRNLLLSL 294

Query: 301 GIVSILTADVDTAIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            ++ +++ +   +++    F  PK+    R      +    +ID++YNANP SM+ AI  
Sbjct: 295 LVLWVISPESVYSLEKDFYFDLPKQ----RLNLKRKENGLVIIDDTYNANPDSMRTAIEY 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR+I +LGDM E+G+ S   H ++ E +   NI      G  +    D   
Sbjct: 351 LDLLKSS--GRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIFYGPEMRKALDTYQ 408

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 +++S+  + +   +++SL  GD ++VK S +      +  L +E 
Sbjct: 409 NLDKKRIYWSKDPEEIKSILKNSLCAGDTILVKGSRAMYMENFVKFLEDEL 459


>gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis 62]
          Length = 457

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V     L  PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDVPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
 gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
          Length = 474

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +   L  PV  V D L A+ KLA     + +  +IA+TGS GK TTK+
Sbjct: 80  CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+    ++    M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
 gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
          Length = 501

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 232/465 (49%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D++ A  G  +       + G+ IDSR     + F  + G   DGH FI  A+++ +
Sbjct: 51  TVKDIVNATGGFLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEPAMERAS 110

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    D V        P   VDD + AL  +    R R     I +TGSVGKTTT+EM
Sbjct: 111 ATLTSEHDNVVISEK---PFIRVDDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREM 167

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+ + +  +   G+ N+ IGVP+TL+RM    D  + E+G+S  G++  L+ +VRP 
Sbjct: 168 IAAAVGTGRHCFQTNGNENSQIGVPMTLSRMTDGYDAAVIEMGISEPGQMEILSDIVRPS 227

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I  AH+      E I   K  I   +++ G + LN DD    LL+     +  +
Sbjct: 228 ICVVTMIGVAHIEFMKTQENIRDEKLSIVNHMKENGLLLLNGDDP---LLREIKDDMSCQ 284

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T+ +FG  +  DFQ     QC EQ    +    G+++ VV   +G H  +N L  + +  
Sbjct: 285 TL-TFGIDEVCDFQGSDV-QCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGIAVAY 342

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   + TA KA   F      G+R R    +  +T++D++YNA+P SMKA+I VL  + 
Sbjct: 343 QLGIPMATAAKAFEHFE-----GQRQRIIRMENRYTILDDTYNASPDSMKASIDVLCDLD 397

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G++ AVL DM E+G+ S S+H  + E L    I  V + G   L +K AL      
Sbjct: 398 C--KGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVVGEKALDIKKALDEC-DT 454

Query: 425 HYSET---MDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y++T   MD   + L++ + +   D+V++K SNS     ++ +L
Sbjct: 455 KYAKTFSFMDNEEVALYLMAIMKPEDIVLLKGSNSMKLNEIVKIL 499


>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
 gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
          Length = 466

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 225/451 (49%), Gaps = 31/451 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +  DSR I P   F  +KG   DGH +I  A++ GA   + + D   +   +  P+ 
Sbjct: 27  IDSVEFDSRLITPGALFVPLKG-ATDGHSYIDKAIENGAVAALWSND--PNEAPVGFPII 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A+   A A     K  ++ ITGS GKTTTK+M   ALS+  K +   G+YNN 
Sbjct: 84  QVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAALSTALKVHKTNGNYNND 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GMS  GEI FL+ L  P + VIT I   H+      E I
Sbjct: 144 IGLPKTILDMPEDTEVIVLEMGMSGAGEISFLSKLAEPDVVVITMIGENHIEFLGSRENI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYD-----DSFFELLKAKSHALGIK---TIYSFGKSKNADF 258
           A AK EI +GL++ GT     D     D     LK  +  +G+     I++F    +  F
Sbjct: 204 AKAKLEILDGLKEEGTFIYPGDEPLIVDQMPTDLKQSTLTIGLNDDHDIFAFDVMMD-QF 262

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q   +   S +  ME+ L G          GY++ QN L  LG+       ++     L+
Sbjct: 263 QSTFYTNLSPELKMEIPLSG----------GYNV-QNALYALGVAYSFGLSMEQVRPNLA 311

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     RG   R  L+     +++++YNA+P++MKA I   S I+  G  ++I VLGDM
Sbjct: 312 EFSITPDRGSWERGILDT---QILNDTYNASPSAMKAVIRNFSAIASKGMSQKILVLGDM 368

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH---VHYSET-MDGL 433
            E+G  S   H ++A V+ L    HV+L G  +  L DAL  + +H   + Y E+  + L
Sbjct: 369 LELGAFSDELHREIATVIGLNTFKHVFLYGPRIQPLVDALIEKGMHPDLITYIESDKEAL 428

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +++ L   D V+VK+SN  G   L+  L
Sbjct: 429 IEQVKAILQPEDKVLVKASNGMGLIELVEAL 459


>gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
 gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
          Length = 460

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 224/446 (50%), Gaps = 19/446 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR I P   F A+KG  +DGHDF   A++ GA  ++V  ++     +  IP  
Sbjct: 24  VQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVEREL-----AFDIPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 79  IVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  +G+FELG +H GEI + + LVRPH+A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVRPHVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HALGIKTIYSFGKSKNA-DFQLRKWK 264
           A AK+EI+  L++ GT  +N DD+F ++++ K+ H   +      G +K   D      K
Sbjct: 199 AQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYKQLSFSQQEGAAKRQIDVIATGHK 258

Query: 265 QCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             S+  +   +   G+S EVV    G H   N L    +   L  ++    + LS   P 
Sbjct: 259 ANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAASVCIALGLNLTEIAEGLSQLTPV 318

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E+G+
Sbjct: 319 KGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +   H +L ++     I  ++ +G        A     H   +  ++ L   I    + 
Sbjct: 371 NAPLLHAELGQLARQQGIDALFCTGTLTQHTSHAFGAEHHDSVATLVEKLIKHINQ--LP 428

Query: 444 GDV-VVVKSSNSCGFYRLINLLLEEF 468
           G V V+VK S S    R+++ L   F
Sbjct: 429 GQVTVLVKGSRSAAMERVVDGLTVAF 454


>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
 gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
          Length = 459

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 18/449 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L++A+ G  +   P     G++ DSR +     F  + G  +DGHD+I      GA + 
Sbjct: 8   ELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCFNAGATVC 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +  +    G  +I V   DD   AL  LA   R +    ++ ITGSVGKT+TK+M++ 
Sbjct: 68  LTSKQIPTVTGCTAILV---DDTAKALRDLAAWYRRKFDIPVVGITGSVGKTSTKDMVSC 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS   K     G++NN IG+PLT+  +    +  + E+GMS  GEI  LT + RPHIA+
Sbjct: 125 VLSQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISRLTAIARPHIAI 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  +H+      E I  AK EI E L+K G + LN DD     LK K   L  +T++
Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKGK---LSFRTVF 241

Query: 249 SFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +G +  +D+    ++   EQ +  E+ +      V     G H   N L  +     + 
Sbjct: 242 -YGMNVGSDYTALNYQPKGEQGTTFEISVNDCLYNVEIPVPGIHNVYNALAAIAAGIEMK 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  I  +  F P    G   +  +N     +I+++YNA+P SM+AAI+VL +IS   
Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLQEIS--S 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIH 423
           E R IAVLGDM EMG++S+  H  + + +    I+++   G     +  A+         
Sbjct: 355 ESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTVGLDSRMISQAVADYGNSQTE 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +H+ E       +I   ++ GD +++K S
Sbjct: 415 IHHFENNKEALKYILEIVMPGDYILIKGS 443


>gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine
           bacterium HP15]
          Length = 462

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 223/450 (49%), Gaps = 36/450 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFG 87
           G+S D+R++ P + F A++G ++DGH F+  A+ KGA GLVV   D      +L++P   
Sbjct: 30  GVSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDTPDT-----NLALPQLV 84

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L AL +LA A R  S A I+AITGS GKTT KEM    LS + KT +  G+ NNHI
Sbjct: 85  VNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMGKTLSTKGNLNNHI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +  +G+ ELG S LGEI     L +P +A++T    AHL  F   E I 
Sbjct: 145 GVPLTLFGLSPEHQYGVIELGASGLGEIAHTVALAKPRVAILTNAGEAHLEGFGSYENIV 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-------ADFQL 260
            AK EI +G+   G + LN DD  F   ++++ A  +  +   G   +        D   
Sbjct: 205 LAKGEIIDGVASDGLMVLNGDDPAFAQWRSRAGARRVAGVSRLGAEADYHAVIDGQDAGT 264

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R ++      W+          V     G H   NML+ +     L A     +  L+  
Sbjct: 265 RTFQVSGPDGWL--------CRVTLGLEGDHNITNMLLAIAATRELGASDQAIVAGLASV 316

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +    +      TLID+SYNANP+SMKAA+ VL+  +    G++IAVLG M E
Sbjct: 317 APVKGRLQVLELSPE---MTLIDDSYNANPSSMKAALGVLAGRA----GQKIAVLGAMAE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  + + H ++      + I  +   G       D    S  +  S         ++S+
Sbjct: 370 LGAKANALHREVGVCAREHGIDRLITVGPGCEGYADGFGESTELGLSHEQ-----AVESA 424

Query: 441 LVDGD---VVVVKSSNSCGFYRLINLLLEE 467
           + D +    V+VK S S    R++  + E+
Sbjct: 425 IGDKNTPLTVLVKGSRSSAMERVVEGIKEK 454


>gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
 gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
          Length = 460

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 146/470 (31%), Positives = 228/470 (48%), Gaps = 27/470 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A++ GA
Sbjct: 5   SLEALSQHLSAHRVG--DDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V  ++     +  +P   V D   A+  +    R +     +A+TGS GKT+ KEM
Sbjct: 63  VALLVEREL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + LVRPH
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPH 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F ++++ K+      
Sbjct: 178 VALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAKQY--- 234

Query: 246 TIYSFGKSKNA-----DFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299
              SF + + A     D      K  SE  +  +    G+S EV     G H   N L  
Sbjct: 235 KQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI+ 
Sbjct: 295 ASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRIRLIDDSYNANPVSVGAAIAW 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G        A  
Sbjct: 351 LKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFG 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
              H   +  ++ L   I    + G V V+VK S S    R+++ L   F
Sbjct: 407 AEHHDSVATLVEKLIKHINQ--LPGQVTVLVKGSRSAAMERVVDGLTVAF 454


>gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
 gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
          Length = 460

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 221/449 (49%), Gaps = 25/449 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR I P   F A+KG  +DGHDF   A++ GA  ++V  ++     +  +P  
Sbjct: 24  IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVEREL-----AFDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 79  IVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  +G+FELG +H GEI + + LVRPH+A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EI+  L+  GT  +N DD+F ++++ K+         SF + + A     D    
Sbjct: 199 AQAKSEIYNHLQSGGTAIINADDAFADVMRVKAKQY---KQLSFSQQEGAAKRQIDVIAT 255

Query: 262 KWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  SE  +  +    G+S EV     G H   N L    +   L   +    + LS  
Sbjct: 256 GHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAAASVCIALGLSLKEIAEGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ +   H +L ++     I  ++ +G        A     H   +  ++ L   I   
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFGAEHHDSVATLVEKLIKHINQ- 426

Query: 441 LVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
            + G V V+VK S S    R+++ L   F
Sbjct: 427 -LPGQVTVLVKGSRSAAMERVVDGLTVAF 454


>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
 gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
          Length = 515

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 230/474 (48%), Gaps = 29/474 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + QA+ G    +  QG    I  D+R I   + F A+ G ++DG+ F+  A+  
Sbjct: 49  IWDCQQIAQAVGGI---LAKQGSPGSICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105

Query: 64  G-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G AG +  +      +G +      V D L AL+KLAV AR R +  ++ ITGS GKTTT
Sbjct: 106 GCAGAIGRSMPTDWPVGFVE-----VSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTT 160

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K M+ +AL S+   +   GS NNHIGVPLTL  +P      + E+GM+HLGEI  L+ + 
Sbjct: 161 KAMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRIC 220

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + V+  + PAH+ N   +E++A AK E+F    +     LN DD     +     A+
Sbjct: 221 KPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPDAM 280

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----GYHMAQNMLM 298
               I  FG+S+ +D +L   +  S    ++  LQ + +           G H+A N   
Sbjct: 281 ----IRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + + L   +  A +++S F P    G R R         LI+++YNANP SM  A+ 
Sbjct: 337 AACVATSLGVPLKAASESISKFSPV---GMRSRLEAISSNIQLINDAYNANPMSMTVALE 393

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+ +    +GR++  LGDM E+G+ ++  H+   + +      HV + G    A  DAL
Sbjct: 394 ILASV--ECKGRKVVALGDMLELGDFARGAHM---KAIKCCQEVHVDVIGTAGPAFSDAL 448

Query: 419 P----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                    V   E    L   + + +  GDVV+VK S       +++ +  +F
Sbjct: 449 NGLELEKCEVVKCENSAALAEELTARVTPGDVVLVKGSRGMRMELVVDAIKRKF 502


>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
 gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
          Length = 460

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/470 (31%), Positives = 227/470 (48%), Gaps = 27/470 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A++ GA
Sbjct: 5   SLEALSQHLSAHRVG--DDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V   +     +  +P   V D   A+  +    R +     +A+TGS GKT+ KEM
Sbjct: 63  VALLVERQL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + LVRPH
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPH 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F ++++ K+      
Sbjct: 178 VALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVKAKQY--- 234

Query: 246 TIYSFGKSKNA-----DFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299
              SF + + A     D      K  SE  +  +    G+S EV     G H   N L  
Sbjct: 235 KQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI+ 
Sbjct: 295 ASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAW 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G        A  
Sbjct: 351 LKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFG 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
              H   +  ++ L   I    + G V V+VK S S    R+++ L   F
Sbjct: 407 AEHHDSVATLVEKLIKHINQ--LPGQVTVLVKGSRSAAMERVVDGLTVAF 454


>gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 461

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 224/445 (50%), Gaps = 14/445 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  ++ D+R + P   F  +KG   DGHD+I  A+Q GA  V+    D+    G   I  
Sbjct: 27  IESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQAGATAVLWGKKDLTPPEG---ICA 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L A  KLA     +    ++ ITGS GKTTTK+M   AL +  + Y   G++NN
Sbjct: 83  IWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGKTTTKDMTAAALGARYRVYKTQGNFNN 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+P T+  MP   +  + E+GMS+  EI FL+ L RP +  IT I  +H+      E 
Sbjct: 143 DIGLPQTILDMPESTEALVLEMGMSNFHEIEFLSKLARPEVVAITLIGESHMEQLGSKEG 202

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI  GL++ GT      +       A++       I + G+  + +   +  + 
Sbjct: 203 IAKAKLEILSGLQEKGTFIYPAHEDLITAGIAQAEKPATFKIVTVGEG-SKELSTKNIEL 261

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S+ +  E+    +++ V    +G +   N L+ + I   L   +   + AL+ F   + 
Sbjct: 262 YSDHTAFELVTPTETVAVTLPVLGAYNVSNALLAIEIARTLEVPLSDIVSALANFELTKN 321

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +    Q    +++++YNA+P +MK+ I   S +S    GRR+ VLGD+ E+GE S
Sbjct: 322 RTQWVK---GQNGVAILNDAYNASPIAMKSVIQ--SFVSVEATGRRVLVLGDIRELGEHS 376

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLV 442
           +  H  ++EV+S   ++ V+L G  + AL DAL     +   H+    + L   +++ L 
Sbjct: 377 KELHASISEVISPSEVALVYLYGEEMEALYDALKDQFEIAALHHYMDKEALIADLKAELK 436

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           +GD V++KSSN  G   +++ L  E
Sbjct: 437 EGDQVLIKSSNGTGLLAVVDALKAE 461


>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
 gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
          Length = 515

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 230/474 (48%), Gaps = 29/474 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + QA+ G    +  QG    I  D+R I   + F A+ G ++DG+ F+  A+  
Sbjct: 49  IWDCQQIAQAVGGI---LAKQGSPGSICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105

Query: 64  G-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G AG +  +      +G +      V D L AL+KLAV AR R +  ++ ITGS GKTTT
Sbjct: 106 GCAGAIGRSMPRDWPVGFVE-----VSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTT 160

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K M+ +AL S+   +   GS NNHIGVPLTL  +P      + E+GM+HLGEI  L+ + 
Sbjct: 161 KAMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRIC 220

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + V+  + PAH+ N   +E++A AK E+F    +     LN DD     +     A+
Sbjct: 221 KPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPDAM 280

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLM 298
               I  FG+S+ +D +L   +  S    ++  LQ +    S        G H+A N   
Sbjct: 281 ----IRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + + L   +  A +++S F P    G R R         LI+++YNANP SM  A+ 
Sbjct: 337 AACVATSLGVPLKAASESISKFSPV---GMRSRLEAICSDIQLINDAYNANPMSMTVALE 393

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+ +    +GR++  LGDM E+G+ ++  H+   + +      HV + G    A  DAL
Sbjct: 394 ILASV--ECKGRKVVALGDMLELGDFTRGAHM---KAIKCCQELHVDVIGTAGPAFSDAL 448

Query: 419 P----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                    V   E    L   + + +  GDVV+VK S       +++ +  +F
Sbjct: 449 NGLELEKCEVVKCENSAALAEELTARITPGDVVLVKGSRGMRMELVVDAIKRKF 502


>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
 gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
          Length = 457

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 192/370 (51%), Gaps = 24/370 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R++   E F A+KGP++DGH FI  A QKGA  V+V+  +      + I  F V+
Sbjct: 24  INTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVDHKV-----DVDIAQFIVN 78

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  +  A   +     IAITGSVGKTT KEM    LS      A  G++NN IGV
Sbjct: 79  DTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNFNNDIGV 138

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     F + ELG +HLGEI + T + +P +AV+  +APAHL  F  +  +A A
Sbjct: 139 PLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSLMGVAKA 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265
           K EIF+GL++ G   +N D  F +    K     IK    F  S+  D     W +    
Sbjct: 199 KGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIK---RFSTSEKLDI----WAEDISL 251

Query: 266 -CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + ++   +  + K + V     G H   N L+   + S L   +D    AL+     +
Sbjct: 252 DANARASFTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALATMGDVK 311

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR      +      T++D++YNAN  S+KAAI +LS +    +G RI  LGDM E+GE 
Sbjct: 312 GRVNLIEVS---DMLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGELGED 364

Query: 385 SQSFHIDLAE 394
           ++ +H ++ E
Sbjct: 365 ARKYHQEVGE 374


>gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
 gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
          Length = 433

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 193/390 (49%), Gaps = 29/390 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G SID+R+I P   + A++G  +DGHDF+  A QKGA  ++V  D+V  +     P   V
Sbjct: 26  GCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQKGASAIIVERDVVCDL-----PTLRV 80

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI-------ALSSIKKTYACIG 141
            D   AL  LA   R R    ++AITGS GKTTTKEML         A S+     A  G
Sbjct: 81  ADTRKALGDLARFWRQRFDLPVVAITGSNGKTTTKEMLKTIFTQKISAESNEINVLATQG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IGVPLTL  +  +  + I E+G +H GEI +LT + +P +A IT  APAHL  F 
Sbjct: 141 NLNNDIGVPLTLFNLQANHRYAIIEMGANHAGEIAYLTQMAKPSVATITQCAPAHLEGFK 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQ 259
            +E +A AK EIF  L + G   +N DD++  L    A SH      I +F     AD  
Sbjct: 201 SVEGVALAKGEIFSHLTEDGIAIINNDDAYTTLWHELAASH-----QINTFALENTADVT 255

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   Q +E S   +    KS   +H  + G H   N L            ++   + L 
Sbjct: 256 AKDI-QLNEDSCDFILHTQKSDIAIHLPLPGQHNIMNALTASACALACGCSLEIIQQGLQ 314

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P +GR + ++        TLID++YNANP S+ AA+++LS   P        +LGDM
Sbjct: 315 NMQPVKGRLQLHKI----NGITLIDDTYNANPTSLNAALAILSNYPP----PYWLILGDM 366

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+G+ S  FH    +      + H+W  G
Sbjct: 367 KELGQKSAEFHQQAGQRAREVGVEHLWAIG 396


>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
 gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
          Length = 441

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 142/436 (32%), Positives = 216/436 (49%), Gaps = 27/436 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +   + F A+KG  +DGH F+  A ++GA  VVV  ++    G  ++ V   +D L
Sbjct: 27  DSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVEREVPVKEGKFALVV---EDSL 83

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  +A+  R   K  ++ I GS GKTTTKE++   LS++ K      +YN+ IGVPL+
Sbjct: 84  KALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVCKTPKNYNSQIGVPLS 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A  P D DF + E+G S  G++  LT LV PH+ VIT+I   HL  F  ++++     E
Sbjct: 144 VANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSIGEEHLETFGCLDDVILGNGE 203

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I EG+          +D    L    +H   ++    FG+      Q  K       +  
Sbjct: 204 ILEGMR---------EDHVAVLPSYVAHCYRVERAVLFGEGTPLSAQDLKL------TVE 248

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            V+   K  E+        + +N+L +LG++  L  D  T +  L+ F P EG   R+R 
Sbjct: 249 GVRFVVKGKEIFLPVPSLALVENILCSLGVMEALGVDWTTLLDKLTTFRPVEG---RFRT 305

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G  T+ID+SYNANP S+K AI  LS +    EG RIAVLGDM E+GE ++  H D+
Sbjct: 306 LSVMG-ATIIDDSYNANPLSVKKAIESLSLM----EGHRIAVLGDMLELGEKAEELHRDV 360

Query: 393 AEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               +   I      G+ +  A  +A    +   Y E    +   ++  L +G +++VK 
Sbjct: 361 GRWCAEKRIDECIFYGYWMRYAFHEAKRLGVSTIYLEDKGEVVQHLRKKLREGTIILVKG 420

Query: 452 SNSCGFYRLINLLLEE 467
           S       +I  LL+E
Sbjct: 421 SRGMKMEEVITQLLQE 436


>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 472

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 221/445 (49%), Gaps = 13/445 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+  DSR + P + F  + G   DGHD+I  A++ GA   + + +  A+     I + 
Sbjct: 27  VTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQAIKNGAVATLWSKEAQAAPAD-QIAIV 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A+  LA   R      +I ITGS GKTTTK+M    L +  K +   G+YNN 
Sbjct: 86  LVDDTLVAMQALANYYRNSLNPKVIGITGSNGKTTTKDMTANVLKAKYKVHKTEGNYNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL +MP D    + E+GMS  GEI  L+ + +P IAVIT I  +HL        I
Sbjct: 146 IGLPYTLLQMPADTQVVVCEMGMSDFGEIEVLSKIAQPDIAVITLIGESHLEFLGSRANI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL++ G      ++    LL+    ALG +   SFG    ADF     K+ 
Sbjct: 206 AKAKLEILKGLKEDGLFIYPANEP---LLQEAGQALGDRA-RSFGLDNTADFYAYDLKED 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +++    +  + +  +   +G +   N ++ L +   L   ++ AI  LS F   + R
Sbjct: 262 KNKTYFHTNIDDQVLCSIPV-MGAYNVGNAMIALTVAQELKVPIEQAIFQLSQFKLTKNR 320

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              +  A N    ++++++YNA+P S+KA +   SQ+    EGRR+  LGD+ E+G  S 
Sbjct: 321 -LEWLTASNGA--SILNDAYNASPTSIKAVLKSFSQVETQAEGRRLVALGDVKELGPESA 377

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLV 442
           ++H  L++ +    I+ V+L G  +  L  AL    P+    +       L   IQ+ L 
Sbjct: 378 NYHAALSQEIDPKKIAKVYLLGPQMQHLYQALQAKFPKQALYYTENDHKALVATIQADLQ 437

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
             D ++VKSS       ++  L+ E
Sbjct: 438 VQDHLLVKSSLGTDMLYVVGKLIGE 462


>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
 gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
          Length = 452

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 217/449 (48%), Gaps = 40/449 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R++ P + F A+ G  +DGH+++  A++KGA  V+++  M      +++P   V 
Sbjct: 28  VSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRM-----EVTVPFLQVA 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +L +  RLR +  ++AITGS GKTT K M+   L    +     G+ NNHIG 
Sbjct: 83  DTTEALGRLGLYNRLRFENPVVAITGSSGKTTVKGMMATLLRQQNEVLVTRGNLNNHIGA 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    D+ + ELG S LGEI +   L RP ++++T    AHL  F  +E I   
Sbjct: 143 PLTLLRLSDSDDYAVIELGASGLGEIAYTAELARPTVSILTNAGNAHLEGFGSVEGIVKT 202

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265
           K EI + L   G   LN D  +FE  + ++   G + + SFG++ +AD +    +     
Sbjct: 203 KGEIIDALADDGVAVLNADSPYFEEWQKRA---GSRRVISFGETLSADIRATDIQSNANG 259

Query: 266 -CS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            C+       EQS +++ + GK           H   N L        L       +  L
Sbjct: 260 CCAFTLHINDEQSQVQLSVMGK-----------HNVFNALACAAACVALDMPPKLIVSGL 308

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            +F   EGR    +  LN     +ID+SYNANPAS++AA+ VL+  S H     I VLGD
Sbjct: 309 QLFEGVEGR-LLEKQGLNGS--RIIDDSYNANPASVRAAVDVLASRSSH----TIFVLGD 361

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  +   H ++        I   +  G       DA     + H+  + D L  F+
Sbjct: 362 MAELGVETHLAHAEVGAYAREAGIDEFFALGEFSRKAADAF--GDNAHWFASHDNLIRFL 419

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              L     V+VK S S    R++N ++E
Sbjct: 420 TKKLNKDVTVLVKGSRSSHMDRVVNDIVE 448


>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
 gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 226/451 (50%), Gaps = 20/451 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L A  G  +    +  +  ISIDSR++   + F  + G   D H FI  A   GA  V
Sbjct: 8   DILSATGGRLLCGSEEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAAAV 67

Query: 69  VVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + +  D + S    + P   V+D   AL  +    R R    ++ ITGSVGKTTT+EM+ 
Sbjct: 68  LTSRHDAMDS----ARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMVA 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            ALS+    Y   G++N+ +GVP+T++ +  + + G+ ELGMS  GE+  +  + +  +A
Sbjct: 124 CALSARYSVYKTPGNHNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQMA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I   H+      + I   K  I +GL + G +FLN DD F +  KAK    G +TI
Sbjct: 184 VITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKE---GCRTI 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G  +N D++                   K + V    +G H   N +++L + +   
Sbjct: 241 Y-YGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVRLAVMGSHNVLNAMVSLAVAAECG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++ A K L  F     R + Y+     G  T+ID++YNA+P SMKA + VL  I+   
Sbjct: 300 IPMEKAAKCLEAFTGFRNRQQIYQT----GGITVIDDTYNASPVSMKAGLEVLGSITKA- 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIH 423
             RRIAVL DM E+G+ + S+H ++ E ++ + +  +     L+G    A+K+  P  I 
Sbjct: 355 -KRRIAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVTLGELAGEIARAVKEHAP-CIQ 412

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           V      D L  +++  L +GD V+ K SNS
Sbjct: 413 VKEFMEQDPLVSYLKEELKEGDCVLFKGSNS 443


>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 233/467 (49%), Gaps = 17/467 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A +G  I    +  V+ IS DSR+I   + F A+KG  +DGH+F+  A+ KGA
Sbjct: 6   TVEDILKATKGILIKGNFKDKVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDAILKGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V+ D+     +    +  V D L AL  +A        A +I ITGS GKTTTK +
Sbjct: 66  KGVIVSRDVNLEDKAF---IIKVQDTLKALQDIANYYLKTLNAKVIGITGSSGKTTTKNL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L  I K Y    ++NN IGVPL++     DVDF + E+ M   GEI  L+ +  P 
Sbjct: 123 VGRLLKLIGKVYVSKENFNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLLSKIAEPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  AH+      E I  AKAEIF+ +++ G   LN DDSF   +  + H   IK
Sbjct: 183 IGVITNIGWAHIGRLGSREAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYERLH---IK 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             Y+FG  + +D +     +  E   + +    GK + +       ++ +N+L  L ++ 
Sbjct: 240 K-YTFGFEEGSDLRGLILDKGKESYTLGLYFPDGKRLTLSLPVYPLNIYRNLLSALLVLW 298

Query: 305 ILTADVDTAIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++ +    +K    F  PK+    R     N+    +ID++YNANP SMK AI  L  +
Sbjct: 299 SISPESIYRVKEDFDFTLPKQ----RLDVKRNKDGLVIIDDTYNANPDSMKTAIEYLELL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                GR++A+LGDM E+G  S   H ++ E +   NI  + L G  +    D   +   
Sbjct: 355 DVP--GRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVLYGQEMKKALDEFEKIDW 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             VH+S+  + +   ++ SL   D V++K S +      +  L +E+
Sbjct: 413 SKVHWSDNPEEIKSILRRSLQPKDTVLIKGSRAMRMEDFVKFLEDEY 459


>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
 gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
          Length = 455

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 231/463 (49%), Gaps = 26/463 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q + G  IG   +  +  +  DSRSI  +  F A+KG  +DGHDF   A++ GA
Sbjct: 5   TLSLLSQRLNGRLIGSDTE--ILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+ ++     +L IP   V D   A+ ++    +   +   +A+TGS GKT+ KEM
Sbjct: 63  SALLVSREL-----ALDIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K     G++NN IGVPLTL R+  D ++G+FELG +HLGEI + + LV+P 
Sbjct: 118 VASILSQHHKVLYTAGNFNNEIGVPLTLLRLEGDEEYGVFELGANHLGEIDYTSSLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  +E +A AK+EIF  L   G   +N DD F ++++  +      
Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHLSADGIAVINLDDPFADVMRGAASQF--- 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
           T  +F     AD +  +    S   +        S E +   + G H   N L    I  
Sbjct: 235 TQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAATAICL 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++  +  L +  P +GR   +      G   +ID+SYNANPAS+ AAI  L +I 
Sbjct: 295 SLGLSLEEVLSGLKLVEPVKGRMLPHEL----GRVRIIDDSYNANPASVGAAIDWLQEI- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G R  VLGD+ E+G+ +   H +L E      I  ++  G     L +    +   
Sbjct: 350 ---DGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFTLG----ELSENTAAAFGG 402

Query: 425 HYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINLL 464
            + + +  L L + +++  + GDV V+VK S S G  R++  L
Sbjct: 403 QHQQELAPLVLCLINTINQLQGDVTVLVKGSRSAGMERVVEAL 445


>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
 gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
          Length = 457

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 224/458 (48%), Gaps = 25/458 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F  +  A     I ++    ++GI+ DSR I P E F A++G ++DGHDF   AV KGA 
Sbjct: 10  FRKIFSANLNSEIDVIDDFLIDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAI 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+   ++   +  IP   V D L A  ++A   R +    +IAITGSVGKTTTKE++
Sbjct: 70  ALIVD-HHISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  LS+    +    +YNN IGVP TL  +    D+ + E+GM  L EI  L+ + RP I
Sbjct: 129 SAVLSNYGIVHKTKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTI 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT +  AH+      E IA AK E+   +    T   N+D+S             ++T
Sbjct: 189 GLITNVGTAHIGRLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLL-----------VQT 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                K +   + L       E   ++ Q L+ + M+      G H A N L  + +   
Sbjct: 238 AKKVWKGETISYGLEGGDITGE--LLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKC 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +  ++ +SV  PK GR +RY+ +   G   L+DE+YNA   SMKAA+ +L +I  
Sbjct: 296 LKLDCNVLMQGISVNLPK-GRSRRYQLS---GDILLLDETYNAGLESMKAALELLKEIPG 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIH 423
               R +A+LG M E+GE S   H ++ E      I H  V +     +A+ D     + 
Sbjct: 352 Q---RHLAILGTMKELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADG-ALGMV 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                T + L   +   +  GD ++ K+SNS G  R++
Sbjct: 408 TECLPTQEELIKRLTEIVQPGDRLLFKASNSVGLNRVV 445


>gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 458

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 218/440 (49%), Gaps = 15/440 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+G+S D+R+I     +  +KG  +DGH F+  A+ KGA  V+ +           +PV
Sbjct: 26  MVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSE--TEGSPPADVPV 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD L AL +LA   R +  A +I ITGS GKTTTK+++   L++  K     G+ NN
Sbjct: 84  IVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL R+  DV+  + E+GMS+ GEI  L+++  P  A+IT I  +HL      E 
Sbjct: 144 HIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI  GL+K G    N D+    L    +H    + + +FG+    D+   +   
Sbjct: 204 IAQAKLEILSGLKKNGLFVYNGDEPL--LASRVAHLPLPEHVLTFGQGNKNDY-YPESVH 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 M    Q  +       +G H   N L  L +        +   +ALS       
Sbjct: 261 LQANGMMFTIRQAANRSFFLPILGKHHVYNALAALAVARFFDVSWENVQEALSRLQVTR- 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R      +  +T+I+++YNANP SMKAA+ +L +++  G  +++AVLGDM E+G+  
Sbjct: 320 --MRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT--GYKKKMAVLGDMLELGDRE 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSG---FHV-LALKDALPRSIHVHYSETMDGLFLFIQSSL 441
             FH ++  +L    + +V+  G    H+ LA +   P    V+  E    L   + + +
Sbjct: 376 VEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPDG-RVNAYEDKRALAKDLLAVV 434

Query: 442 VDGDVVVVKSSNSCGFYRLI 461
             GDV+++K+S       L+
Sbjct: 435 SPGDVILLKASRGMKLEELL 454


>gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 947

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 218/435 (50%), Gaps = 14/435 (3%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           I+S+ +   + FFAIKG   DG+ F+  + ++ A L VVN        S  I V    + 
Sbjct: 515 INSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQNKLNHSRQIKV---KNT 571

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L  ++   R      IIAITGS GKTT KE+L   L+ I K      SYNN  GVPL
Sbjct: 572 LKFLTNVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNKISKVSISPKSYNNKFGVPL 631

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +L  +    +FGI E+GM   GEI +L+ ++ P + VIT I  AH  NF  I++IA AK+
Sbjct: 632 SLFNINQKDEFGILEVGMDKKGEIDYLSKIIEPDVGVITNINYAHAKNFKNIKQIALAKS 691

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQS 270
           EI + +   G I LN DDSFF+L    +    IK I SFG K+  AD +L   K   ++ 
Sbjct: 692 EIIDNIRLYGFIVLNADDSFFKLHYNIAKKKNIKVI-SFGIKNHKADIKLINIKPFRKKF 750

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + + L  K    +      +   N+L  L ++SI              F    GRG   
Sbjct: 751 RINISLNNKRKYFLLSNDFQNNIYNILSALAVISIYKNIFKLDKNIFYDFKIPGGRGDHS 810

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               N     LID+SYN+NP S+K+AI    +I+   +  +  ++GDM E+G  S+  H 
Sbjct: 811 VIKFNNKKINLIDQSYNSNPLSLKSAIKNYDKINLK-KSNKYMLIGDMLELGSHSRRLHR 869

Query: 391 DLAEVLSLYNISHVWLSG-FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +A +++  NI  V++ G    +  KD   A    I ++ S+ ++     I+  L + D 
Sbjct: 870 SVAPIINKSNIDKVYVKGKMASIIFKDISKAKKGRILLNKSQIIE----LIRKDLNNNDY 925

Query: 447 VVVKSSNSCGFYRLI 461
           +++K+S + GF  ++
Sbjct: 926 LMIKASLATGFNDIV 940



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 162/394 (41%), Gaps = 48/394 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           + +GIS D+++I     FFAIKG  +DG++FI  A+ KG+ ++V     V S+ +  I  
Sbjct: 18  YFSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVT-EKKVKSVQN-GILY 75

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---- 141
              ++V   L + A     +    +IA+TG+ GK++        L    K  A IG    
Sbjct: 76  IHTNNVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILKLNNKKVASIGTLGV 135

Query: 142 -SYNNHIGV------PLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRP 184
            S N ++ +      P+ LA++   +     E          L  + L  ++F +     
Sbjct: 136 KSKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNS----- 190

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALG 243
              + T ++  HL     ++   +AK  +FE L +K G +  +     F+ +K  +    
Sbjct: 191 --GIFTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLITDQLIPEFKKIKKITINKR 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +K +Y+    KN + Q+       E    +++L      +  + IG    +N+LM +   
Sbjct: 249 LK-LYALNDKKN-NLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAA 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++  +  +    P EGR ++     N     L    Y   P ++K  +  L + 
Sbjct: 307 KNSNIGLNKILNKIYKLKPVEGRFEKIGKIKNHSKVIL---DYAHTPDALKTCLLNLREQ 363

Query: 364 SPHGEGRRIAVL---------GDMCEMGELSQSF 388
            P    ++I VL             +MG+++  F
Sbjct: 364 FP---AKKIIVLFGCGGNRDQNKRSKMGKIASYF 394


>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 460

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 227/469 (48%), Gaps = 47/469 (10%)

Query: 20  GIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           G+VP G +        ++ DSR + P   F A  G  +DGHDF   A+++GA  VVVN  
Sbjct: 12  GLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNH- 70

Query: 74  MVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSK--ATIIAITGSVGKTTTKEM 125
                     PV GV +    L        + + A  RS+    ++ +TGSVGKTTTK+M
Sbjct: 71  ----------PVPGVPEEKAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              ALS   +T    G+ NN +G+P TL R+    ++ + E+GMSH GEI  L    RP 
Sbjct: 121 TYAALSGFGETIKTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT I  +H+ N    E I  AK EI  GL +   + LNYDD F       +H   ++
Sbjct: 181 VGIITCIGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAH---VR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            ++     +NAD      +Q ++     ++ Q     VV+   +G H   N L      +
Sbjct: 238 PVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAAT 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    I+ LS F   E  G+R +   ++G  T+I++ YNANP SMKAA+++     
Sbjct: 298 RLGCDAKRVIRGLSNF---EQTGRRQKVVDSEG-VTVIEDCYNANPDSMKAALAMFKDFP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALP 419
                RR A+LGDM E+GELS+  H +L  + +   +  +   G       V+A    + 
Sbjct: 354 CK---RRFALLGDMLELGELSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGV- 409

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++H   Y E  D L   +Q     GD ++VK+S+     +++++  EE
Sbjct: 410 ETLHADSYREAADALLSRVQP----GDAILVKASHGMALEKVLDIFYEE 454


>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 471

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 211/425 (49%), Gaps = 27/425 (6%)

Query: 12  QAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           Q +QG  I     I     + G+S D+R I P + F A+ GP++DGH FI  A Q GA  
Sbjct: 11  QQVQGELIRSEKSIAANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKFIDTAAQGGAVA 70

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+V+  +   +  +      V D   AL +L  A +       +AITGS GKTT KEM+ 
Sbjct: 71  VIVSRKVDTELAQIL-----VSDTKEALGRLGQAIKREVAPKTVAITGSSGKTTVKEMVA 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K  A  G++NN IGVPLTL R+  D +F + ELG +HLGEI + T LV+P +A
Sbjct: 126 AILSRRGKVLATKGNFNNDIGVPLTLLRLEADHEFAVVELGANHLGEIAYTTELVKPDVA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I   A AHL  F  +  +A AK+EIF+GL K G    N D  F+     K   L  +  
Sbjct: 186 TIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQ-- 243

Query: 248 YSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +F     AD+  +        C++  ++ V   GK + +     G H   N L++  + 
Sbjct: 244 -AFSTKDEADYYAQDVVLGLNGCAD--FLMVTPLGK-VSISLPLPGLHNVSNALVSAALA 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A++      L       GR +  + +   G   ++D++YNAN AS+ AAI +L   
Sbjct: 300 IEVGANLQDVQAGLQYMAQVSGRLQVKQLS---GQVKVLDDTYNANVASVNAAIDLLGSF 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    GR++ VLGDM E+GE ++ +H  + E      I  ++  G    +  D   +S +
Sbjct: 357 A----GRKVLVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSASDVYQKSGY 412

Query: 424 VHYSE 428
            H+S+
Sbjct: 413 -HFSD 416


>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
 gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
          Length = 458

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 218/440 (49%), Gaps = 15/440 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+G+S D+R+I     +  +KG  +DGH F+  A+ KGA  V+ +           +PV
Sbjct: 26  MVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSE--TEGSPPADVPV 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD L AL +LA   R +  A +I ITGS GKTTTK+++   L++  K     G+ NN
Sbjct: 84  IVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL R+  DV+  + E+GMS+ GEI  L+++  P  A+IT I  +HL      E 
Sbjct: 144 HIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI  GL+K G    N D+    L    +H    + + +FG+    D+   +   
Sbjct: 204 IAQAKLEILSGLKKNGLFVYNGDEPL--LASRVAHLPLPEHVLTFGQGNKNDY-YPESVH 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 M    Q  +       +G H   N L  L +        +   +ALS       
Sbjct: 261 LQANGMMFTIRQAANRSFFLPILGKHHVYNALAALAVARFFGVSWENVQEALSRLQVTR- 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R      +  +T+I+++YNANP SMKAA+ +L +++  G  +++AVLGDM E+G+  
Sbjct: 320 --MRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT--GYKKKMAVLGDMLELGDRE 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSG---FHV-LALKDALPRSIHVHYSETMDGLFLFIQSSL 441
             FH ++  +L    + +V+  G    H+ LA +   P    V+  E    L   + + +
Sbjct: 376 VEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPDG-RVNAYEDKRALAKDLLAVV 434

Query: 442 VDGDVVVVKSSNSCGFYRLI 461
             GDV+++K+S       L+
Sbjct: 435 SPGDVILLKASRGMKLEELL 454


>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 458

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 224/466 (48%), Gaps = 19/466 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   + +     +  G    G+    SIDSR+I P E FFA+KG   DGHD++  A+ +
Sbjct: 5   LWRIAEFIHGTGDYRAGAEALGY----SIDSRTIKPGELFFAVKGERLDGHDYVQAALDR 60

Query: 64  GAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA   VV+ +  A   G+ ++ V   DD L AL++LA   R      ++ +TGS GKTTT
Sbjct: 61  GAVAAVVSREFPARFNGTRNLLV--ADDPLLALHRLAEMVRSLWHHPVVGVTGSAGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   L+S  K     G+ NNH G+PL L ++  + +  + E+GMSH GEI  L  L 
Sbjct: 119 KECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P+  V+T +AP HL NF  I  IA AK E+   L + G   LN DD F        H  
Sbjct: 179 QPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRGGCAVLNADDEFVSQFGRDFHG- 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              T+  FG  + ADF+    +   +  S  +++ + K        IG H   N L  + 
Sbjct: 238 ---TVLMFGVKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALAAVA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +++AI +L    P + RG+    A      T++++ YN+NP ++ A +  L+
Sbjct: 295 VGVHHGIAIESAIASLKTLKPADKRGEVVEIA----GATVVNDCYNSNPKALNAMVDALA 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++      RRI + G+M E+G   +  H D  + +       V + G     ++ A    
Sbjct: 351 KMPAQ---RRIVIAGEMLELGPEGEHLHRDSGKHMKGIVDHLVGVRGLAQAMVEGAKSAG 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   +  T +    ++ +++  GD V++K+S      R +    E+
Sbjct: 408 VEAEFVATPEEAGDWLAANIRPGDAVLLKASRGVKLERALERWKEK 453


>gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
          Length = 483

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 232/460 (50%), Gaps = 21/460 (4%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           + + GH  G     F+  +S D+R I   + + A++G  +DG DF   A++ GA  V++N
Sbjct: 9   KVLHGHIKGPTDARFM-AVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATAVLMN 67

Query: 72  TDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
            D   +   +  P   +  V D   AL +LA   R +    ++AITGS GKTT KEML  
Sbjct: 68  ADSFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVKEMLAS 127

Query: 129 ALSSIKKT----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L S   +     A  G++NN IG+PLTL ++     + + E+GM+H GEI +LT +  P
Sbjct: 128 VLRSAAGSDDAVLATKGNFNNDIGMPLTLLQLNAQHRYAVIEMGMNHPGEIDYLTRIACP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++A+I   + AHL     +E +A AK EIF GL+  G+  +N DD F  L +  +   G 
Sbjct: 188 NVALINNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGSAIINADDEFAPLWRCLA---GA 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++  FG S ++D  +  W+       ++V+       V     G H A+N L       
Sbjct: 245 NSLLEFGLSGHSDV-VGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNALAVTAAAI 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +++ +  LS F    GR +R      +G   LID++YNANPAS+KAAI+VL+ +S
Sbjct: 304 ALNLSLESIVAGLSKFSGVAGRLQRKPA--REG-AVLIDDTYNANPASLKAAIAVLAAMS 360

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G+R+ VLGDM E+GE + +FH  +   +    I +++  G   L+ +      +  
Sbjct: 361 ----GQRVLVLGDMGELGEDTAAFHAGIGINVRESGIENLYALG--ELSREAVREFGVGA 414

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + E +D L   +   L  G  V+VK S      R++  L
Sbjct: 415 LHFEHIDALLAELDKELKVGTTVLVKGSRFMKMERVVKHL 454


>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 445

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 210/388 (54%), Gaps = 26/388 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L + ++G   G  PQ  V G SIDSR +   + FFA+KG  +DGHDF+  AV +GA   
Sbjct: 5   ELAKVLRGELRGD-PQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGC 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV  D V   G  SI V    +   AL +LA+  R   +  ++ + GSVGKTTTKE++  
Sbjct: 64  VVERD-VEHAGKFSIKVSSTQE---ALRELALYRRGIFRGEVVGVAGSVGKTTTKELIHH 119

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS+   ++   G+ N+ IG+PL +  MP++VD+ + ELG S +G++  L  + +P + V
Sbjct: 120 LLSNAAASFRSEGNLNSQIGLPLVVCNMPLEVDYAVLELGASAVGDVERLVEVAQPKVRV 179

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           IT +   HL +F  +E++     EIF G  E +  +  +Y   +++L + +        +
Sbjct: 180 ITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPHYALEYYDLPRER--------V 231

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG+    D    K +   + +  E   +G S+ ++  G+     QN+L   G+++ L 
Sbjct: 232 TTFGEG--GDLNAGKVRLSLKGTEFEFWGEGFSVPLLSRGV----VQNVLAAFGVLTSLG 285

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     +AL  F P +GR       LN G F ++D++YNANP S++ A++ L+ +    
Sbjct: 286 YDPRDFREALKSFTPPQGR----MNLLNFGNFFVVDDTYNANPPSVRNALTTLASLQTT- 340

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEV 395
             +++AVLGDM E+G  S  +H ++ ++
Sbjct: 341 -SKKVAVLGDMLELGVESGRYHAEVGKL 367


>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 460

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 227/469 (48%), Gaps = 47/469 (10%)

Query: 20  GIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           G+VP G +        ++ DSR + P   F A  G  +DGHDF   A+++GA  VVVN  
Sbjct: 12  GLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNH- 70

Query: 74  MVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSK--ATIIAITGSVGKTTTKEM 125
                     PV GV +    L        + + A  RS+    ++ +TGSVGKTTTK+M
Sbjct: 71  ----------PVPGVPEEKAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              ALS   +T    G+ NN +G+P TL R+    ++ + E+GMSH GEI  L    RP 
Sbjct: 121 TYAALSGFGETIKTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT I  +H+ N    E I  AK EI  GL +   + LNYDD F       +H   ++
Sbjct: 181 VGIITCIGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAH---VR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            ++     +NAD      +Q ++     ++ Q     VV+   +G H   N L      +
Sbjct: 238 PVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAAT 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    I+ LS F   E  G+R +   ++G  T+I++ YNANP SMKAA+++     
Sbjct: 298 RLGCDAKRVIRGLSNF---EQTGRRQKVVDSEG-VTVIEDCYNANPDSMKAALAMFKDFP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALP 419
                RR A+LGDM E+GELS+  H +L  + +   +  +   G       V+A    + 
Sbjct: 354 CK---RRFALLGDMLELGELSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGV- 409

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++H   Y E  D L   +Q     GD ++VK+S+     +++++  EE
Sbjct: 410 ETLHADSYREAADALLSRVQP----GDAILVKASHGMALEKVLDIFYEE 454


>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SS3/4]
          Length = 462

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 223/447 (49%), Gaps = 19/447 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSI 83
            +N I +DSR +   + F  I G   D H F+    +KGAG V+ +   +    +   S 
Sbjct: 25  MLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLTSEHKEKTEEMAETSC 84

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VDD   AL  +    R R    I+ +TGSVGKTTT+EM+  ALS+    Y   G+ 
Sbjct: 85  AWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMIAAALSARFHVYKTPGNS 144

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +GVP+T++ +  + + G+ ELGMS  GE+  +  + +P +AVIT I   H+      
Sbjct: 145 NSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAKPDVAVITNIGITHIEQLGSR 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I   K  I +GL   G + LN DD      + K   +G+KT+Y +G  +  D++    
Sbjct: 205 ENIYREKLTIQDGLSDGGILILNGDDDMLCRTRGK---VGVKTVY-YGTGETCDYRAVDL 260

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                ++       GK+ +V+ + +G H   N L  + +       ++ A + L  FH  
Sbjct: 261 VLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNALAAIAVCCERGMTMEEAAEGLLTFHGF 320

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R + Y      G FT++D+SYNA+PASMKAA+ V   ++     R IAVL DM E+G 
Sbjct: 321 KHRQQVY----ADGRFTVMDDSYNASPASMKAALDVFQGLTGK---RHIAVLADMKELGG 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQS 439
              ++H ++ E  +   +  V   G    +L + + R++     V +S+  + +  ++++
Sbjct: 374 NYLAYHREVGEYAANSGVDLVVTLGEACRSLAEGV-RAVKEIPVVEFSDCGE-MVKYLEA 431

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + DGD V+ K SNS G   + +  +E
Sbjct: 432 EIRDGDCVLFKGSNSMGLSAVADQFVE 458


>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
 gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
          Length = 457

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 223/458 (48%), Gaps = 25/458 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F  +  A     I ++    ++GI+ DSR I P E F A++G  +DGHDF   AV KGA 
Sbjct: 10  FRKIFSANLNSEIDVIDDFLIDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAI 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+   ++   +  IP   V D L A  ++A   R +    +IAITGSVGKTTTKE++
Sbjct: 70  ALIVD-HHISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  LS+    +    +YNN IGVP TL  +    D+ + E+GM  L EI  L+ + RP I
Sbjct: 129 SAVLSNYGIVHKTKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTI 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT +  AH+      E IA AK E+   +    T   N+D+S             ++T
Sbjct: 189 GLITNVGTAHIGRLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLL-----------VQT 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                K +   + L       E   ++ Q L+ + M+      G H A N L  + +   
Sbjct: 238 AKKVWKGETISYGLEGGDITGE--LLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKC 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +  ++ +SV  PK GR +RY+ +   G   L+DE+YNA   SMKAA+ +L +I  
Sbjct: 296 LKLDCNVLMQGISVNLPK-GRSRRYQLS---GDILLLDETYNAGLESMKAALELLKEIPG 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIH 423
               R +A+LG M E+GE S   H ++ E      I H  V +     +A+ D     + 
Sbjct: 352 Q---RHLAILGTMKELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADG-ALGMV 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                T + L   +   +  GD ++ K+SNS G  R++
Sbjct: 408 TECLPTQEELIKRLTEIVQPGDRLLFKASNSVGLNRVV 445


>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 460

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 229/463 (49%), Gaps = 35/463 (7%)

Query: 20  GIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-- 71
           G+VP  F+        ++ DSR + P   F A  G  +DGHDF   A++ GA  VVVN  
Sbjct: 12  GLVPADFIREEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVNHP 71

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + V +  ++  P     D   A+  +    R +    ++ +TGSVGKTTTK+M   AL+
Sbjct: 72  VEGVPAEKAILCP-----DSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALA 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              +T    G+ NN +G+P TL R+  + ++ + E+GMSH GEI  L    RP + +IT 
Sbjct: 127 GFGETIKTEGNQNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITC 186

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I  +H+ N    E I  AK EI  GL +   + LNYDD F    K  +H   +K ++   
Sbjct: 187 IGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDKFLRAAKLPAH---VKPVWFSL 243

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADV 310
             +NAD      +Q  +     ++ Q +   VV    +G H   N L      + L  D 
Sbjct: 244 ADENADVCALSIRQEEDGMSFVLEDQEEGTFVVKIPAMGKHNVANALAAYCAATRLGCDP 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              IK LS F   E  G+R +   ++G  T+I++ YNANP SMKAA+++  +       R
Sbjct: 304 RGVIKGLSNF---EQTGRRQKVVHSKG-VTVIEDCYNANPDSMKAALAMFKEFPCK---R 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIHV- 424
           R A+LGDM E+GELS+  H +L  + +  ++  +   G +     V+A    + +++H  
Sbjct: 357 RFALLGDMLELGELSREAHEELGRLAAESDLYCLVTYGENAKRTAVVAAAKGV-KTLHAN 415

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +Y E  D L   I+     GD ++VK+S      +++ +   E
Sbjct: 416 NYREAADALLNRIEP----GDALLVKASRGMALEKVLEIFYAE 454


>gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 456

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 220/451 (48%), Gaps = 20/451 (4%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +  Q  + G + D+R++   + F  +KG H++GH F+  A +KG   V+   D       
Sbjct: 21  VFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLW--DRSEPNPP 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V  VDD L AL KLA A        +I +TGS GKTTTK+ML   L +  + +   
Sbjct: 79  KERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTA 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P  AVIT I  +H+ + 
Sbjct: 139 GNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E IA AK EI  GL + G +F   D+    LL+ K++     T   +G+  + D +L
Sbjct: 199 GSREGIAEAKLEIINGLREDGVLFYFGDEP---LLREKAYTCRTTT---YGEGADNDLRL 252

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           ++ KQ  E ++  +    +S  +    +G H   N +             + A   LS  
Sbjct: 253 KEIKQAEEGTYFTIDGIDRSFFIPV--LGRHNVMNAMGAYAAGIYFGITPENAALGLSRL 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                 G R      +   ++++++YNA+P SMKAAI ++  +   G  +++ VLGDM E
Sbjct: 311 KVT---GMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK--GYRKKMLVLGDMLE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLF 436
           +G+  ++FH +    ++   I HV+  G     + D   +        HY +  + L   
Sbjct: 366 LGDEEKAFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEEGRVSHYLDKKE-LLEA 424

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           I+ +   GD+++ K+S        +  LLE+
Sbjct: 425 IRENAASGDLLLFKASRGMKLEETVKDLLEK 455


>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
 gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
          Length = 454

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 224/441 (50%), Gaps = 16/441 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ D+R ++    F  + G H++GH F   AV+ GA  V+ N           +PV 
Sbjct: 27  IYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKEANP--PFGVPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA +        ++ ITGS GKTTTK+M+   L +  + +   G++NNH
Sbjct: 85  LVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQTTYQVHKTDGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  MP   +  + E+GMS  GEI FL++L  P  AVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILAMPEGTEIAVLEMGMSAKGEIEFLSNLAEPETAVITNIGESHMQDLGSREAI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL+K GT +   D+    L++ ++ AL  + + +FG++++ D ++    Q 
Sbjct: 205 ADAKCEITKGLKKDGTFYYLGDEP---LIRDRATALS-QQVKTFGEAEDCDIKVTHINQL 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +E +  E Q++G +   +   +G H  +N L  + I      +     + L      +  
Sbjct: 261 AEGT--EFQVEGYAQGFLIPVLGKHNVKNALAAIAIGQHFGLNERQIAQGL---MQTKLT 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +   T+I+++YNA+P SMKAAI ++  +   G   RI VLGDM EMG   +
Sbjct: 316 GMRLELFKTEKGITVINDAYNASPTSMKAAIDLVGDMD--GFANRILVLGDMLEMGSEEE 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG- 444
           ++H +L   +    I HV   G     + +   +S         MD   L  + + V G 
Sbjct: 374 TYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGDARVFSFMDKEELKKKLADVAGP 433

Query: 445 -DVVVVKSSNSCGFYRLINLL 464
            DVV+VK+S       +I  L
Sbjct: 434 DDVVLVKASRGMRLEEVITAL 454


>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
 gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
          Length = 470

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 222/446 (49%), Gaps = 24/446 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GISIDSR+    + FFAI+G  +DGH F+  A+ +GA   VV    V   GS  +   
Sbjct: 27  VAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGAAACVVKRGEVTDPGSQLL--L 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDDV  AL + A   R +  A +I +TGSVGKTTT+ M+  ALSS         ++NN 
Sbjct: 85  EVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSMIYTALSSCLTGIQSPANFNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVPL++A +     F + EL  SH+GEIR L  +  P I VIT I  +HL +F  +++I
Sbjct: 145 FGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K E+FE L  TG   +  DD F + L +++ A  ++     G  +N D Q    +Q 
Sbjct: 205 AETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKVR----IGLGENNDLQAVSIEQD 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +     V  Q   + VV    G H     L  + +   L        ++L  +    GR
Sbjct: 261 QQGISFRVNGQQYLLPVV----GRHFVNAALAAIAVARELGISEQDVAESLRNYSTVPGR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH-GEGRRIAVLGDMCEMGELS 385
             + +     G +T+ID++YNA+P SM+AA  VL     H G G+RI VLGDM E+G  +
Sbjct: 317 CHQMQI----GDWTVIDDTYNASPDSMRAACQVLHD---HVGTGKRIMVLGDMLELGPET 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG-----LFLFIQSS 440
           + +H +L  ++    +  ++  G    ++     RS  + +++ +       L   +   
Sbjct: 370 ERYHRELGILVCQAGVDLLFACGKQATSVAQG-ARSAGMSHTKIITAADVELLAEDVTDL 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466
           L  GDVV+VK S      RL+  L +
Sbjct: 429 LEPGDVVLVKGSRGMRMERLLQHLQQ 454


>gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 463

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 216/445 (48%), Gaps = 18/445 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            G V G+S DSRS+   + F  ++GP +DGHDFI  AVQ GA +  ++ +++A    L +
Sbjct: 22  DGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGA-VACLSEEVIAG---LPV 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V D L AL  LA A R      ++A+TGS GKTTTKEML   L+   +     G++
Sbjct: 78  PVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEMLAGILALRGEGLKTEGNF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P TL R+  D  + + ELGMS  GEI  L  + RP I VIT + PAHL     +
Sbjct: 138 NNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDIGVITNVGPAHLETLHNL 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A AK E+F  L   GT  +N DD     L     A G++ +  +G   +A+ +    
Sbjct: 198 QGVARAKGELFAALPAGGTAVINGDDPRVLQLPV---ANGVRRLI-YGCGSDAEVRAEDI 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   + L G+S  V     G +   N L        L       ++ L  F   
Sbjct: 254 AVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHALKVGGAQIVEGLEAFRSC 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR      A      TL+++ YNANP ++KAA+S L ++   G GRRIAVLGDM E+G+
Sbjct: 314 AGRMAVAELASGA---TLLEDFYNANPLAVKAALSALDEMP--GSGRRIAVLGDMLELGD 368

Query: 384 LSQSFH----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            +   H    +D ++ + L  +           A +  +P    V   ++ D     +  
Sbjct: 369 AASEMHRQTGLDASKCVDLLILLGERAEDTAAGARQGGMPPQ-SVWVVKSHDEAVQLLAG 427

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            L  GD V+VK S      ++ N L
Sbjct: 428 ILRPGDRVLVKGSRGMTMEKICNAL 452


>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 457

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 220/447 (49%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++G++ D+R +   + F  +KG H++GH F+  A +  AG+  V  D        + 
Sbjct: 24  QTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFE--AGVAAVLWDRSEPNPPENQ 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL +LA A        +I +TGS GKTTTK+M+   L +  + +   G++
Sbjct: 82  AVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTRYRVHKTGGNF 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP D +  + E+GMS  GEI  L+ L  P  AVIT I  +H+ +    
Sbjct: 142 NNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL++ G +    D+   +    K+++   KT   +G     D+QL+  
Sbjct: 202 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----KTYSCQTKT---YGAGAQNDYQLQDV 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q  E +   ++   K+  +    +G H   N +  +   +      + A K LS     
Sbjct: 255 SQSEEGTHFTIKGMEKTFFIPI--LGKHNVMNAMAAIAAGAYFGITPEDAAKGLSGLKV- 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R          ++I+++YNA+P SMKAAI +   +   G G+++ VLGDM E+G+
Sbjct: 312 --TGMRLELIKTDSGISIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           L ++FH +   V+S   I  V+    L  F          +    HY+E  D L   ++ 
Sbjct: 368 LEETFHKECGAVISPEKIDRVFTYGKLGAFIAEGALKHFEKERVSHYTEKKD-LLQAVKE 426

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   GD+++ K+S       ++  L+E
Sbjct: 427 NASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
 gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 217/448 (48%), Gaps = 20/448 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  + G + D+R++   + F  +KG H++GH F+  A +KG   V+   D          
Sbjct: 24  QTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLW--DRSEPNPPEGR 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL  LA A        +I +TGS GKTTTK+ML   L +  + +   G++
Sbjct: 82  AVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTAGNF 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P  AVIT I  +H+ +    
Sbjct: 142 NNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL + G +F   D+    LL+ K++     T   +G   + D +L++ 
Sbjct: 202 EGIAEAKLEIINGLREDGVLFYFGDEP---LLRQKTYTCRTTT---YGAGADNDLRLKEI 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           KQ  E ++  +    +S  +    +G H   N +             + A   LS     
Sbjct: 256 KQAEEGTYFNIDGIDRSFFIPV--LGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R      +   ++++++YNA+P SMKAA+ ++  +   G  +++ VLGDM E+G+
Sbjct: 314 ---GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMK--GYRKKMLVLGDMLELGD 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQS 439
             ++FH +    ++   I HV+  G     + D   R        HY +  + L   IQ 
Sbjct: 369 EEKAFHEECGAAVNPAEIDHVFTYGTLGAFIADGARRHFEEGRVSHYLDKKE-LLHAIQE 427

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               GD+++ K+S       ++  LLE+
Sbjct: 428 MAASGDLLLFKASRGMKLEEIVKDLLEK 455


>gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
 gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
          Length = 425

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 220/439 (50%), Gaps = 33/439 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88
           +S DSR+I     FFA+KGP+++G++F + A+ +GA L VV+  D       + +P    
Sbjct: 16  VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEGDFPDEPRCIRVP---- 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL +LA+  RL+ KA II +TGS GKTTTKE++   LS   +T A  G+ NNHIG
Sbjct: 72  -DALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + +  I E+G +H GEIR L+ + +P    IT    AHL  F G+E +  
Sbjct: 131 VPLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFGYITNFGKAHLEGFGGVEGVIR 190

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K+E++E L E+  TIF+N DD   FE L   ++ +G      F     A  Q++     
Sbjct: 191 GKSELYENLMERGATIFMNADDPVQFEKLAGYANCVG------FSTRNPAYMQIKNLTDG 244

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  V+LQ   + V     G +   N  ++  I        +   +AL  + P   R
Sbjct: 245 P-----AVRLQVDDVVVQTQLTGRYNFSNCAVSACIGKHFGVPAEAIAEALESYIPANNR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELS 385
            +     + +G   ++ ++YNANP SM AA+  L+++ SP    R+IA+LGDM E+G  +
Sbjct: 300 SQ----LIERGNLRILLDAYNANPTSMAAALENLAEMDSP----RKIAILGDMFELGAEA 351

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + H  +       N   ++L G H      ALP +    ++     L     + L    
Sbjct: 352 AAEHEAVGRFALSKNPEKLYLVGQHF--YDTALPAARFPDFAALSREL---KANPLTGPA 406

Query: 446 VVVVKSSNSCGFYRLINLL 464
            V++K S      R++  L
Sbjct: 407 TVLIKGSRGMALERVLEFL 425


>gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 459

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 152/479 (31%), Positives = 236/479 (49%), Gaps = 46/479 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   ++G  IG     F++ +S DSR++  Q  F A+KG ++DGH F   AV  GA
Sbjct: 5   SLSELATRLKGQLIG--DDLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V  ++  +   L      V++   A+ ++    R +   T +A+TGS GKT+ KEM
Sbjct: 63  NALLVERELPINATQLI-----VNNSQKAMGEIGAYVREQVAPTCVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   +     G++NN IGVPLTL R+    +FG+FELG +H GEI + + LV+P 
Sbjct: 118 IATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEIDYTSSLVKPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSH---- 240
           +A++  +A AHL  F  +E +A AK+EIF  +   GT  +N DD+F + +L+A SH    
Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHISTGGTAVINADDAFADVMLQASSHVKQL 237

Query: 241 ALGIKTIYS-----FGKSKNADFQLR-KWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHM 292
             G+K   S     F     AD   R  +  C  +E   +E+ L G+           H 
Sbjct: 238 CFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRVELPLAGR-----------HQ 286

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    I   L   +    + LS+  P +GR          G  T+ID+SYNANPAS
Sbjct: 287 VSNALAATSICIALGLSLPLICQGLSLLQPVKGR----MLPSQLGRVTVIDDSYNANPAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           + AAI  L +I    +G R  VLGD+ E+G+ +   H +L E+     +S ++  G    
Sbjct: 343 VGAAIDWLQEI----KGNRCLVLGDLGELGDNAALLHRELGELAKAKGVSALFCVG---- 394

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQ--SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L +    +    +   +DGL    +Q  + L     V+VK S S    R++  L   +
Sbjct: 395 TLSEGASHAFGSKHYHDIDGLVAGLVQYINELPADITVLVKGSRSARMERVVEALTTAY 453


>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 484

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 153/480 (31%), Positives = 221/480 (46%), Gaps = 27/480 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +++QA+ G +I  V    VNG+S+DSR++     FFAIKG HYDG  FI  A   GA
Sbjct: 7   SLEEVIQAVNGKAISNVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQAFDAGA 66

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VVV+      I    +P+  VDDV  AL  LA   R +  A II ITGS GKTTTKEM
Sbjct: 67  IGVVVSKQGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKTTTKEM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS          S+NN IGVPLT+  +     +GI E+G +  GEI  L+ +  P 
Sbjct: 127 LYHLLSHFAPVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPGEILRLSEIGLPD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVI  I+  HL     IE +A  K +I + L++ G    N D+    L    +   G  
Sbjct: 187 IAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNP---LCCEIADKFGGN 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------------GKSMEVVHHGIGYHM 292
            I SFG  +NA  +    K+    S   + +               +  E+     G+H 
Sbjct: 244 KI-SFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRLCGVKGGGRRQFEIQLQVPGHHN 302

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L +  +   L  D+     A   F   + R    +     G  T I+++YNANP S
Sbjct: 303 ISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQQI----GNVTFINDAYNANPES 358

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           + AA+    +I     GR+I + GDM E+G+ S + H +L E  S  N+  +W  G +  
Sbjct: 359 VFAALKYFEEIDA--AGRKIFICGDMLELGKESHALHKELGEKASTLNLDLLWTVGKYAS 416

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               A KD       V    ++D +  +      + DV+++K S       +I+   E F
Sbjct: 417 DIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIKGSRGMHMETIIDKYREYF 476


>gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 195/385 (50%), Gaps = 25/385 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA  V+V  +    +    +P   
Sbjct: 17  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVERE----VADAPLPQLL 72

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKTT KEML   L +     +   A  G+ 
Sbjct: 73  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 133 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+I  AK EI EGL   GT  LN DD  F+  KA++    + T +S  + + ADF+    
Sbjct: 193 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 250

Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q   +  M  +LQG + E  V  + +G H   N L        L   +D  +  L    
Sbjct: 251 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 309

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR       L      +ID+SYNANPASM AAI +LS  S    GR + VLGDM E+
Sbjct: 310 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 362

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           G  ++  H ++      +V +LY +
Sbjct: 363 GSWAEQAHREVGAYAAGKVSALYAV 387


>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 459

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 220/449 (48%), Gaps = 18/449 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L +A+ G  +   P     G++ DSR +     F  + G  +DGHD+I    + GA + 
Sbjct: 8   ELAEAVTGKLLWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVC 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +  +    G  ++ V   DD   AL  LA   R +    ++ ITGSVGKT+TK+M++ 
Sbjct: 68  LTSKPIPEVAGCSAVLV---DDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSC 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS         G++NN IG+PLT+  +    +  + E+GMS  GEI  LT + RP IA+
Sbjct: 125 VLSQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRLTAIARPDIAI 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  +H+      E I  AK EI EGL K G + LN DD   + LK K   L  +T+ 
Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGK---LPFRTVL 241

Query: 249 SFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +G    +D+    ++   EQ +  E+ +      V     G H   N L  +     + 
Sbjct: 242 -YGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIEMK 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  I  +  F P    G   +  +N     +I+++YNA+P SM+AAI+VL +IS   
Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISSG- 355

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIH 423
             R IAVLGDM EMG +S+  H  + E +    I+++      SG    A+ D+    I 
Sbjct: 356 -SRSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITVGQDSGMISQAVADSGNGEIK 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           + + E+      +I   ++ GD +++K S
Sbjct: 415 LRHFESNKEALKYILGIVMPGDYILIKGS 443


>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Marinobacter aquaeolei VT8]
 gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Marinobacter aquaeolei VT8]
          Length = 465

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 194/372 (52%), Gaps = 17/372 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           + +G+S D+RS+   + F A++G  +DGH+F+  A+++GA   VV+T+    I  ++IP 
Sbjct: 29  WFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQGAVAAVVDTE----ITDVAIPQ 84

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D + AL  LA   R  S A ++AITGS GKTT +EM    L+ +  T    G+ NN
Sbjct: 85  LVVSDTVQALADLASGNRSESAARLVAITGSSGKTTVREMTGAILAGMGPTLVTEGNLNN 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL R+  D  FG  ELG S LGEI     + RP +A++T    AHL  F   + 
Sbjct: 145 HIGVPLTLFRLTPDHQFGAIELGASGLGEIAHTVSITRPQVAILTNAGQAHLEGFGSYQN 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I  AK EI +G+   G + LN DD  F+   A++    +  +   G    AD+       
Sbjct: 205 IVLAKGEIIDGVPADGAVVLNRDDPAFDQWHARAGQRRVLGVSRMGHPA-ADYHAEAI-M 262

Query: 266 CSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            ++Q +  + L   S    +V    G H   N L+ L     L A        L      
Sbjct: 263 ATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNALLALAACRELGATDQQVQSGLMQVEAV 322

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMG 382
           +GR +  + A +    TLID+SYNANPASMKAA+ VL S  +P     R+AVLG M E+G
Sbjct: 323 KGRLQVLKPASD---LTLIDDSYNANPASMKAALDVLASYPAP-----RLAVLGAMAELG 374

Query: 383 ELSQSFHIDLAE 394
           + ++  H  + E
Sbjct: 375 DEAEELHRQVGE 386


>gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           loihica PV-4]
 gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella loihica PV-4]
          Length = 456

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 224/460 (48%), Gaps = 51/460 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR +  Q  F A+KG  +D HDF   AV  GA  ++V  ++      ++ P  
Sbjct: 24  VSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMDGASALLVEREL-----PIAAPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +   A+ ++    +       +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 79  IVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVATILSTQHQVLYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTL R+    ++G+FELG +HLGEI + + LV+P +A++  +A AHL  F  +E +
Sbjct: 139 VGVPLTLLRLEPQHEYGVFELGANHLGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKN-ADFQLRKW 263
           A AK+EIF  L K G   +N DD+F ++++  A SH     T  SF    N AD    + 
Sbjct: 199 AKAKSEIFLHLAKDGVAVINADDAFADVMRRAAASH-----TQLSFSSQGNPADVSADEL 253

Query: 264 KQ----C--------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                 C         EQ  + + L G+           H   N L    I   L   +D
Sbjct: 254 SADALGCYRFRIAYLDEQRTVSLPLSGR-----------HQVSNALAATSICLALGLSLD 302

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             ++ L    P +GR +  R     G F LID++YNANPAS+ AAI  L +I    EG R
Sbjct: 303 EIVQGLMRLQPVKGRMQPTRL----GRFLLIDDTYNANPASVGAAIDWLQEI----EGNR 354

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             VLGD+ E+G+ +   H  L E      I  ++  G    A  +A       H+++ +D
Sbjct: 355 CLVLGDLGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRASSEAFAGK---HFTD-LD 410

Query: 432 GLFLFIQS---SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L + + S    L     V+VK S S    R++  L+  F
Sbjct: 411 ALVVDLVSYFNQLTGKVTVLVKGSRSARMERVVEALIAAF 450


>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 224/482 (46%), Gaps = 27/482 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  DL+ A  G  +       +  IS+DSR +   + F  I G + D H F+  A+  G
Sbjct: 6   FTCRDLVLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNG 65

Query: 65  AGLVV---------VNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           A  V          V  D++   G        ++S     V D   AL    +  R R K
Sbjct: 66  AAAVFTSRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQK 125

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ ITGSVGKTTT+EM+  ALS+    Y   G+ N+ +GVP+T+A +P     G+ EL
Sbjct: 126 LPLVGITGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQIGVIEL 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GMS  GE+  +  + R   AV+T I   H+      + I   K  I +G+ + G++ LN 
Sbjct: 186 GMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAENGSLILNG 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +  +    G +    +G S +  ++       +         + K + V    
Sbjct: 246 DDRLLRSVIPE----GNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLRV 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G HM  N L  L +       ++ A   L  F   +GR + +     +G  T+ID+SYN
Sbjct: 302 MGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTL---KGGITVIDDSYN 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P SMKA + VL  + P G GRRIAVL DM E+G  +  FH ++ E ++++ +  V L 
Sbjct: 359 ASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQVVLL 418

Query: 408 GFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G     +   L  S   + V + E ++ +  ++  +L  GD V+ K SNS    + +  L
Sbjct: 419 GGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLFKGSNSMKLSQAVRHL 478

Query: 465 LE 466
            E
Sbjct: 479 EE 480


>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 456

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 219/451 (48%), Gaps = 20/451 (4%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +  Q  + G + D+R++   + F  +KG H++GH F+  A +KG   V+   D       
Sbjct: 21  VFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLW--DRSEPNPP 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V  VDD L AL KLA A        +I +TGS GKTTTK+ML   L +  + +   
Sbjct: 79  KERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTA 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P  AVIT I  +H+ + 
Sbjct: 139 GNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E IA AK EI  GL + G +F   D+    LL+ K++     T   +G+  + D +L
Sbjct: 199 GSREGIAEAKLEIINGLREDGVLFYFGDEP---LLREKAYTCRTTT---YGEGADNDLRL 252

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           ++ KQ  E ++  +    +S  +    +G H   N +             + A   LS  
Sbjct: 253 KEIKQGEEGTYFTIDSIDRSFFIPV--LGRHNVMNAMGAYAAGIYFGITPENAALGLSRL 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                 G R      +   ++++++YNA+P SMKAAI ++  +   G  +++ VLGDM E
Sbjct: 311 KVT---GMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK--GYRKKMLVLGDMLE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLF 436
           +G+  + FH +    ++   I HV+  G     + D   +        HY +  + L   
Sbjct: 366 LGDEEKVFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEEGRVSHYLDKKE-LLEA 424

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           I+ +   GD+++ K+S        +  LLE+
Sbjct: 425 IRENAASGDLLLFKASRGMKLEETVKDLLEK 455


>gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 228/467 (48%), Gaps = 25/467 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GL 67
           ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA  +
Sbjct: 8   EIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAV 67

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    + V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GKTTTK+M+ 
Sbjct: 68  ITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L ++  P +A
Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLKNIAEPQVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243
           V T I  AH+      E I  AK E+ E  ++   I LN DD     +     +K +  G
Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKYSSKYYRYG 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           IK+    G+ K  D      K+  +     ++ +    E+     G H   N L  + + 
Sbjct: 248 IKS----GEIKACDI-----KKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAAICVG 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                +V+   +AL  F P    GK     + +G   +ID+ YNANP SMKAA+SVL  +
Sbjct: 299 LEFGINVEDMAEALKDFQP----GKMRLNIIEKGDMKIIDDVYNANPDSMKAALSVLRDL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419
                 R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG    +     K    
Sbjct: 355 PAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGM 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  ++    T + +   ++  + +GD ++VK S      +++  L E
Sbjct: 412 KGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458


>gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
 gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
          Length = 462

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 223/446 (50%), Gaps = 15/446 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIP 84
            +  +S D+R ++    F  +KG   DGHD+I  A+ +GA  V     D     G  +I 
Sbjct: 26  MIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVFWGRQDQTPPEGICAI- 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              VDD L A  +LA     + +  +I ITGS GKTTTK+M    L+S  + Y   G++N
Sbjct: 84  --WVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKDMTAAVLASRYRVYKTQGNFN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+P T+  MP D +  + E+GMS  GEI FL+ L +P +A IT I  +H+ N     
Sbjct: 142 NDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKPSVAAITLIGESHMENLGSRA 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK EI +GL + G+I    ++   E    +  A     +  FG+  ++  Q    +
Sbjct: 202 GIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEHFKVLPFGEGSSSVIQAENIQ 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + +  ++ ++     V    +G +   N L  L +       ++ AI+A+  F   +
Sbjct: 262 LFEDHTIFDL-VKPSKQSVQLPVLGAYNVNNALAALQVGLECGVPLEQAIEAIQQFELTK 320

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +            +++++YNA+P +MK+ I   + ++   +GR+I VLGD+ E+GE 
Sbjct: 321 NRTQWVDGIHGS---KILNDAYNASPIAMKSVIQSFTSVAT--KGRKIVVLGDIRELGEQ 375

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSET-MDGLFLFIQSS 440
           S++ H  ++EV+   +I  V+L G  + AL +AL     + H+HY E     L   ++  
Sbjct: 376 SKALHASISEVMFPEDIQEVYLYGEEMSALFEALKTRFEASHLHYVENDKQALIRLLEEE 435

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466
           L   D V+VKSSN  G   ++  L E
Sbjct: 436 LRQNDQVLVKSSNGTGLLSVVEALKE 461


>gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
 gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
          Length = 469

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 228/456 (50%), Gaps = 25/456 (5%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G +P+ F + +S D+RS+ P   F A+ GP++D + ++  AV  GA  ++ +     S  
Sbjct: 26  GTLPEVF-HSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGASGILCSRPPAQS-- 82

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L IP++ V D L A+ +LA A R    A  I ITGS GKTT KEML + +SS  +T   
Sbjct: 83  -LPIPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEMLGLIVSSRYRTGIT 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NNHIG+PLTL   P D    + E+GMS  GEI  L  L +P I ++T I  AH++ 
Sbjct: 142 RGNLNNHIGLPLTLLNCPSDRTHLVLEMGMSAPGEIAHLAELAQPQIGIVTNILAAHVAG 201

Query: 200 FSG------IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-K 252
           F G      +  IA AK E+ + L   G   L   D    LL++ +       I SFG +
Sbjct: 202 FGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTGC----AILSFGPQ 257

Query: 253 SKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           S  AD          +     + L  G+   +   G G H+  N +        L  D  
Sbjct: 258 SSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVAACAAAYGLGLDAA 317

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + LS F  ++GRG        Q    +++++YNAN  +M+ A+  LS ++P    +R
Sbjct: 318 AMQEGLSRFKLQKGRGSVEH---GQVGCRILNDTYNANVGAMRVALEALSHMAP--APQR 372

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSE 428
           IAVLGDM E+GE + + H +LA+ +    I  ++L+G H+ AL  AL  S  +   HY++
Sbjct: 373 IAVLGDMLELGEAADTLHAELAQTILALGIQRIFLAGPHMAALYQALQSSPGLQLFHYAD 432

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  L   +   +  GD V+VK S      R++  L
Sbjct: 433 PV-ALAKDLSHYVGHGDAVLVKGSRGMRMERVVEAL 467


>gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 469

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 147/473 (31%), Positives = 251/473 (53%), Gaps = 26/473 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHY-DGHDFILHAV 61
           +W+  DL  A+     G+     VNGI   +S+ I P + F A++  +  DGH F+  A+
Sbjct: 5   IWSAADLTAAL-----GVPVNVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDAL 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
            +GA  V+V+  +  +       +  V++ + AL++LA   R + K  T I ITGSVGKT
Sbjct: 60  ARGADAVIVSKLIDNNTND---KIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE++    S+  KT+A   ++NN +G+ L LA +P++ ++ IFEL     GE++ L  
Sbjct: 117 STKEIMFKVFSTHYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELCTRSPGELQKLVK 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++  +IAV+T I  AH   F+ +E +  AK EIF GL   G   +N D  FF       +
Sbjct: 177 ILPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYIN 236

Query: 241 ALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            LGI  +++FG  + ++ ++    +   +++S + +   G  ++     +GY  A N+  
Sbjct: 237 KLGINNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + +I   +++   + ++     EGRGK Y    +     +ID+ YNANPASMK A+ 
Sbjct: 297 VMLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALD 356

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L QI      R++A+LGDM E+G  ++  H++L   +  YNI HV   G  +  + + L
Sbjct: 357 LLDQIKAK---RKVAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVISIGSLMKNVYELL 412

Query: 419 PRSIHV-HYSE----TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           P  + + HY+     T+D L   +     D D V++K SN    ++++  LLE
Sbjct: 413 PAELKLSHYNNINELTVDQLLPLLH----DKDYVLIKGSNRMRLWQVVENLLE 461


>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
          Length = 462

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 237/482 (49%), Gaps = 50/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            TF +++ A+QG    +V QG     N IS D+R I   + F A+KG +++G+++I  A 
Sbjct: 4   MTFDEIVNAVQGK---VVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVAS 60

Query: 62  QKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             GA + +++      D +         +  V+D   AL +LA A R +    +I ITGS
Sbjct: 61  DNGASMCIIDEIKYREDEIEK----GTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGS 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK++L  ALSS  K +   G++NN IG+PL + ++    D  + E+GM++L EI 
Sbjct: 117 NGKTSTKDLLAAALSSKYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLNEIH 176

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            +    +P IA+IT +  +H+ N    E I  AK EI +  +K   + +N D+    L  
Sbjct: 177 RMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDL--LSG 234

Query: 237 AKSHALGIKTI-YSFGKSKNA-DFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGI--GY 290
            KS+   I T     G + NA D +L+       ++++E  V+  GK  E   H    G 
Sbjct: 235 VKSNKFSIYTTGMENGNNLNACDIELK-------ENFVEFSVEENGKKFEETFHVEIPGK 287

Query: 291 HMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEG--RGKRYRCALNQGFFTLIDES 345
           H   N L+ +    IL     D+   +K L     +    +GK+         F ++++ 
Sbjct: 288 HTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLIKGKK---------FNILNDC 338

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SMKAAI VL  +      RRIAVLG M E+GE S   H ++ E  +   +  + 
Sbjct: 339 YNANPDSMKAAIDVLKNVES---SRRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLL 395

Query: 406 LSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             G +  A ++    S    Y    +  +G+   +   L +GD V+VK+S S  F +++ 
Sbjct: 396 TFGEYNKAFEEGFKSSTKAEYKAFDDYSEGIKYLVNGYLKEGDTVLVKASRSMKFEKIVE 455

Query: 463 LL 464
            L
Sbjct: 456 EL 457


>gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
 gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 458

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 194/385 (50%), Gaps = 25/385 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA   +V  +    +    +P   
Sbjct: 26  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKTT KEML   L +     +   A  G+ 
Sbjct: 82  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+I  AK EI EGL   GT  LN DD  F+  KA++    + T +S  + + ADF+    
Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259

Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q   +  M  +LQG + E  V  + +G H   N L        L   +D  +  L    
Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR       L      +ID+SYNANPASM AAI +LS  S    GR + VLGDM E+
Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           G  ++  H ++      +V +LY +
Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396


>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
 gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
          Length = 448

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 225/470 (47%), Gaps = 44/470 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PL    ++L A   H  G +    V G++ D+RS+ PQE F A  G ++DGH F   AVQ
Sbjct: 6   PLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFAESAVQ 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V+  + A+   L +P     D L A  +L    R + +  IIAITGSVGKTTT
Sbjct: 66  QGAIAAIVDHPIDAATPQLVVP-----DTLVAYQRLGQWWRQQFQIPIIAITGSVGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+++  L +         +YNN IGVP TL  +  D D+ + E+GM   GEI  L+ + 
Sbjct: 121 KELISAVLGTAGSVLKTEANYNNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAELSQIA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT +  AH+      E IA AK E+   +       LN D+S   +  A++   
Sbjct: 181 QPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQMPAESLAVLNADNSLL-IETAQTVWS 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNML 297
           G +  Y      + D Q               QL  ++++V  H       G H A N L
Sbjct: 240 GAQVTYGL---DSGDLQ--------------GQLADQTLQVADHSFPLPLPGAHNALNYL 282

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I   L  D+    + +S+  P  GR ++     +     ++DE+YNA   SM+AA+
Sbjct: 283 AALAIAQHLHLDLAPLQQGISLELPS-GRARKLTLPND---VVVLDETYNAGLESMQAAL 338

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVL 412
            +L+Q    GE RRIAVLG M E+GE +   H  +  ++   NI  + +      G  + 
Sbjct: 339 HLLAQTP--GE-RRIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLILDQGPEGTALA 395

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           A    +P      +   MD L   IQ     GD ++ K+S+S G  R+++
Sbjct: 396 AGTTTVPTEQFAEHQALMDYLDQHIQP----GDRLLCKASHSVGLDRIVD 441


>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
 gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
          Length = 455

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 220/444 (49%), Gaps = 20/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ D+R +   + F  + G +++GH F+  A + G   V+ N          ++ + 
Sbjct: 27  IQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENGVSAVLWNKSEPNPPQDQAVIL- 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD LGAL +L+ A        +I +TGS GKTTTK+ML   L +  + +   G++NNH
Sbjct: 86  -VDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKDMLHAVLQTQFRVHKTEGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  MP D +  + E+GMS  GEI  LT L  P  AVIT I  +H+ +    E I
Sbjct: 145 IGLPLTVLSMPEDTEVAVLEMGMSGKGEIDLLTRLANPEAAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+K G +    D+    LL  +S++   KT   FG  +  D+QL   KQ 
Sbjct: 205 AEAKLEITNGLKKDGILIYIGDEP---LLNKRSYSCRTKT---FGADEGNDYQLEDVKQT 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + +   ++   K+  +    +G H   N +            V+ A K LS        
Sbjct: 259 EDGTHFSIKGIDKTFFIPV--LGKHNVLNAIAAFAAGIHFGITVENAAKGLSGLKV---T 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R     ++   ++I+++YNA+P SMKAAI ++   S  G G+++ VLGDM E+G+L Q
Sbjct: 314 GMRLELLKSESGVSIINDAYNASPTSMKAAIELIE--SMEGYGKKMLVLGDMLELGDLEQ 371

Query: 387 SFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            FH +   V++   I +V+    L  F          +    H+++  + L   +     
Sbjct: 372 EFHTECGAVINPAAIDYVFTYGKLGAFIAAGAHRHFDQERVSHFNDKAE-LLQAVAEKAE 430

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
            GD+++ K+S       ++  L++
Sbjct: 431 KGDLILFKASRGMKLEEIVKDLMK 454


>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 233/469 (49%), Gaps = 29/469 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA  V
Sbjct: 8   EIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAV 67

Query: 69  VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    D V  +   S+ V  V++ L AL+K+A     +     IA+TGS GKTTTK+M+ 
Sbjct: 68  ITARLDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGKTTTKDMIA 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L ++V+P +A
Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIVKPQVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243
           V T I  AH+      E I  AK E+ E  ++   I LN DD     +     +K +  G
Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLG 301
           IK+    G+ K  D +         +  ++  L+ K++E  +   I G H   N L  + 
Sbjct: 248 IKS----GEIKACDIE-------KGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAIC 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      +V+   +AL  F P    GK     + +G   +ID+ YNANP SMKAA+SVL 
Sbjct: 297 VGLEFGINVEDMAEALKDFQP----GKMRLNIIEKGDIKIIDDVYNANPDSMKAALSVLR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG    +     K  
Sbjct: 353 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNMSKYIAEESKVC 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  ++    T + +   ++  + +GD ++VK S      +++  L E
Sbjct: 410 GMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458


>gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 194/385 (50%), Gaps = 25/385 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA   +V  +    +    +P   
Sbjct: 26  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVERE----VADAPLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKTT KEML   L +     +   A  G+ 
Sbjct: 82  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+I  AK EI EGL   GT  LN DD  F+  KA++    + T +S  + + ADF+    
Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259

Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q   +  M  +LQG + E  V  + +G H   N L        L   +D  +  L    
Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR       L      +ID+SYNANPASM AAI +LS  S    GR + VLGDM E+
Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           G  ++  H ++      +V +LY +
Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396


>gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas aeruginosa PAb1]
          Length = 458

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 194/385 (50%), Gaps = 25/385 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA   +V  +    +    +P   
Sbjct: 26  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVERE----VADAPLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKTT KEML   L +     +   A  G+ 
Sbjct: 82  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+I  AK EI EGL   GT  LN DD  F+  KA++    + T +S  + + ADF+    
Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259

Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q   +  M  +LQG + E  V  + +G H   N L        L   +D  +  L    
Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR       L      +ID+SYNANPASM AAI +LS  S    GR + VLGDM E+
Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           G  ++  H ++      +V +LY +
Sbjct: 372 GSWAEEAHREVGAYAAGKVSALYAV 396


>gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 469

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 230/445 (51%), Gaps = 37/445 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I     + A+KGP+++GHDFI  A   GA  V+ + ++     + S+PV  V+
Sbjct: 29  VSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGASAVIASENV-----TTSLPVISVE 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  L  A +       IAITGS GKTT KEM    L+      A  G++NN IGV
Sbjct: 84  DTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEMCAAILARRGNVLATNGNFNNDIGV 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    ++ + ELG +HLGEI + T+LV+P +A I   A +HL  F  +  +A A
Sbjct: 144 PLTLLRLEPHHEYAVMELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARA 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQ 265
           K+EIF+GLEK G   +N D  F E  + K       T +S  +  +ADFQ          
Sbjct: 204 KSEIFKGLEKDGVAIVNVDSQFAEFWQGKLKQTKTLT-FSPQQKNDADFQAEDITIGLDG 262

Query: 266 CSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           C+  S+  V  QG+ ++++   G+  H   N L+   +   + A+++     L       
Sbjct: 263 CA--SFHLVCPQGEIAIQLTIPGV--HNVGNALVAAALTLQVGANLENVRDGLIAMQQVS 318

Query: 325 GRGKRYRCALNQGFFT----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           GR       LN    T    L+D++YNAN AS+ AAI  LS  S    G R+ VLGDM E
Sbjct: 319 GR-------LNVKQLTDQVRLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQS 439
           +GE ++ +H  + E      I++++  G  VL+    A+      H+S+ ++ L   ++S
Sbjct: 368 LGEKARFYHEQVGEYAKQKGINYLYTMG--VLSQSASAVFNENGGHFSD-VESLLAAMES 424

Query: 440 SLV--DGDV-VVVKSSNSCGFYRLI 461
            L+    D+ ++VK S S    R++
Sbjct: 425 DLLVQQRDISILVKGSRSSKMERVV 449


>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
 gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
          Length = 469

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 225/486 (46%), Gaps = 57/486 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T +++ +A  G  IG    G  + +S DSR +AP E F A++G  +DGHDFI+ AV K
Sbjct: 3   MFTLNEIAEATGGRVIGEA-AGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSK 61

Query: 64  GAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           G  + +      A        G++ +P     D L AL  LA   R R     + +TGS 
Sbjct: 62  GVTIFLAEESWAAKHELPKGAGAVLVP-----DTLRALGDLAAYHRRRFNLKTVCVTGSN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML   L+         G+ NN IG+PLT+ R+     + +FE+GMS  GEI  
Sbjct: 117 GKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDR 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--- 234
           L  +  P + +IT   PAHL     +E +A AK E+F  L+       N DD        
Sbjct: 177 LAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPT 236

Query: 235 -LKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            L       G++       +I S GK +   F LR              L     +V   
Sbjct: 237 HLNVTRLTFGLRGAEVSSASIQSLGK-RGESFTLR--------------LPDGEQQVTLS 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L        L    D   + L  F P +   KR++     G  TLID+SY
Sbjct: 282 AYGRHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYD---KRFQLEEVAG-VTLIDDSY 337

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANPASM AA++ L ++   GEGR +AVLGDM E+G  ++  H +L + L+  N+  ++L
Sbjct: 338 NANPASMAAALTTLKEL--QGEGRLVAVLGDMLELGLGTEEAHRELGK-LAAGNVDRLYL 394

Query: 407 SGFHVL-----ALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            G  V      AL+  LP +  V    + +    L  F+Q     GD ++ K S      
Sbjct: 395 LGKLVEETAKGALEAGLPAADLVLGRDHDQLAQELLSFVQP----GDCILFKGSRGMKMD 450

Query: 459 RLINLL 464
           ++  L+
Sbjct: 451 KVAQLV 456


>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
 gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
          Length = 461

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 138/405 (34%), Positives = 197/405 (48%), Gaps = 16/405 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +  ++  A+ G  I   P+  +  ISIDSR+I P + F AI G  +DGH FI  A
Sbjct: 1   MIPM-SLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGK 119
           V KGA  ++V+  + A  G   + +  V+D   AL  LA   R+  K  T+I ITGS GK
Sbjct: 60  VSKGARALIVDHSIKAYPG---VGIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L          G+ NN+ G+PLTL  +  D +  + E+GMS LGEI  L 
Sbjct: 117 TTTKDMIASVLKEKYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIELLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT + P HL N   +  +A  K E+ EGL   G   LNYD+ +   +  K 
Sbjct: 177 SISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDM--KD 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNML 297
           +  G K IY +G S  AD      K   +   +      + +   +     G H   N L
Sbjct: 235 YVEGKKVIY-YGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERITLQKPGKHNVYNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L  D       L        R    R   N+   TLI+++YNANP SMKAAI
Sbjct: 294 AAIAVARYLRVDWGGIKNGLYNIDLSSLRWD-VRDLGNE--ITLINDTYNANPLSMKAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                I+     R I VLG M E+G++ +  H+DL   ++  N+ 
Sbjct: 351 EATFDIAQE---RVITVLGGMLELGDMEEKAHVDLGRYVAERNVD 392


>gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
 gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea]
 gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
          Length = 455

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 192/367 (52%), Gaps = 17/367 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+I  Q  F A+KG  +DGH+F   AV+ GA  ++V+ ++      L+I    V 
Sbjct: 27  VSSDSRAIPEQTLFVALKGDKFDGHNFANTAVENGAIALLVDHEL-----PLNITQVIVK 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A+ +L    +   +   +A+TGS GKT+ KEM+   LS   K     G++NN IGV
Sbjct: 82  DTQRAMGELGAYLKELIQPRSVALTGSNGKTSVKEMVATILSQRHKVLYTAGNFNNEIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D +FG+FELG +H GEI + + LV+P +A++  +A AHL  F  +E +ASA
Sbjct: 142 PLTLLRLEADDEFGVFELGANHKGEIDYTSSLVKPDVALVNNVASAHLEGFGSLEGVASA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+EIF  L  TGT  +N DD F  ++ A S      T  +FG    AD Q    +     
Sbjct: 202 KSEIFNHLTPTGTAIINADDGFASVMLAASTDY---TQLTFGIDSAADIQASDLEADPMG 258

Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +  ++    +++ +     G H   N L    I       +D      S+  P +GR  
Sbjct: 259 CYRFKLSYLRETLLIALPLPGRHQVSNALAATAICLSFGLTLDEIKLGFSLLVPVKGR-- 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                   G   +ID+SYNANPAS+ AA+  L +I    EG R  VLGD+ E+G+ +   
Sbjct: 317 --MLPTQLGRVRVIDDSYNANPASVTAAVDWLHEI----EGHRCLVLGDLGELGDNAPLL 370

Query: 389 HIDLAEV 395
           H +L E+
Sbjct: 371 HTELGEL 377


>gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS678]
          Length = 460

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 197/388 (50%), Gaps = 22/388 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR I     F A+KG  +DGHDF   A++ GA  ++V  ++   I  L +P  
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A+  + V  R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 82  ---DCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +FGIFELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F + +  K+         SF +   A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   +   G+S +VV    G H   N L    +   L   +    + LS  
Sbjct: 256 GHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ +   H +L ++     I  ++ +G
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395


>gi|58038639|ref|YP_190603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
 gi|58001053|gb|AAW59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
          Length = 373

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 204/372 (54%), Gaps = 11/372 (2%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL  L   AR R +  ++AITGSVGKTTTK+ML +ALS+I  T+A + SYNNH GVPLTL
Sbjct: 3   ALVDLGRNARARFRGKVVAITGSVGKTTTKDMLKVALSAIGPTHAAVASYNNHWGVPLTL 62

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           AR+P D  F I E+GM+H+GEI  L   VRP +A+ITTI  AHL +   IE IA  K+++
Sbjct: 63  ARLPQDARFCISEIGMNHIGEIAPLAAQVRPDVAIITTIGTAHLGHMGSIEAIAQEKSDL 122

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L   G   +  D +  E  +    A G   ++  G S+ A  ++      +E S   
Sbjct: 123 FSALSDKGIAIVPDDAAGQEHFQTALPA-GC-ALWRSGFSETAQLRIENLHCSAEGSHFS 180

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           + L      V     G H+A+N  + LG V+ L  DV  A  AL  F P  GRG+  R  
Sbjct: 181 LHLPSGIQNVTLTAPGEHLARNAALALGAVAALGEDVAVAATALQNFVPGAGRGQ-MRTI 239

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           LN     L+DESYNA+  S++AA++ L+ +      R IA LGD+ E+G  + + H  LA
Sbjct: 240 LND--VRLLDESYNASTPSVRAALATLALLPAQ---RHIAALGDIRELGTFADAEHRSLA 294

Query: 394 EVLSLYNISHV-WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +  ++ N   + +  G H+ AL DALP  +   Y+     L   +  +L  GD+++VK S
Sbjct: 295 D--AVQNAKAIAFCCGPHMRALYDALPSELQGGYAADAASLAPLLLKALRPGDLLLVKGS 352

Query: 453 NSCGFYRLINLL 464
                  +I++L
Sbjct: 353 FGSRMRDVISVL 364


>gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           denitrificans OS217]
 gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella denitrificans OS217]
          Length = 457

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 219/443 (49%), Gaps = 22/443 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+I     F A+KG  +D HDF   A++ GA  ++V  ++     +L IP   V 
Sbjct: 27  VSTDSRAIPAACLFVALKGERFDAHDFAATAIENGAKALLVEREL-----ALDIPQLIVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +   A+ ++    R       +A+TGS GKT+ KEML   LS   +     G++NN IGV
Sbjct: 82  NSQKAMGEIGALVRDIVSPICVALTGSNGKTSVKEMLASILSQGHQVLYTAGNFNNEIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    ++G+FELG +H GEI + + LVRP +A++  I  AHL  F  IE IA A
Sbjct: 142 PLTLLRLSQADEYGVFELGANHKGEIDYTSSLVRPRVALVNNIGSAHLEGFGSIEGIAEA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+EIF  L   G   +N DD+F EL+K K+ A   +  +S   + NAD Q       +  
Sbjct: 202 KSEIFNHLSADGVAVINADDAFCELMKTKAKAFK-QLSFSREANTNADIQATGLNMNAAG 260

Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +  QG+ + V     G H   N L    +   L   +   +  L+   P +GR +
Sbjct: 261 CYGFTIHYQGQQLAVQLPLAGIHQVSNALAASAMCLALGISLTDIVSGLARLAPVKGRMQ 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +      G   +ID+SYNANP+S+ AAI  L     + +G    VLGD+ E+G+ +   
Sbjct: 321 PHTL----GRLLVIDDSYNANPSSVSAAIDWLK----NRDGFCCLVLGDLGELGDNAAHL 372

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--- 445
           H  + +      I  ++  G   L+   +L      HY+E +  L + + S++       
Sbjct: 373 HAQVGQQAKEAQIDALFCCG--SLSENTSLAFG-SPHYAE-LPALLVELTSAIKANRGAV 428

Query: 446 VVVVKSSNSCGFYRLINLLLEEF 468
            V+VK S S    R++  LL  +
Sbjct: 429 TVLVKGSRSARMERVVENLLNAY 451


>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis XB6B4]
          Length = 470

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 216/460 (46%), Gaps = 41/460 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G  IDSR +     F A+KG   DGH FI    +KGA  V+   ++    G    P  
Sbjct: 28  IAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVLSEQELSEPAG----PYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+  LGA+ KLA   R      ++ ITGSVGKT+TKEM+   LS         G++NN 
Sbjct: 84  RVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQKYNVLKTEGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++    +  + E+G+S  GE+  L  +  P I VIT I   HL N    + I
Sbjct: 144 IGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E FE L   GT  LN DD        +   +  K +  +G  K A  +L K +Q 
Sbjct: 204 LKAKTESFEHLTPEGTAVLNGDDDKL----CEKKMVNGKPVVFYGIGKEA--KLAKTEQ- 256

Query: 267 SEQSWMEVQLQGKSME---------VVHHG----------IGYHMAQNMLMTLGIVSILT 307
            E+   E ++    +E         V+H G           G H   N L  + +   L 
Sbjct: 257 GEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             VD   + +       GR       +++G  T+ID+ YNANP SMKA+I VL+  +P  
Sbjct: 317 LSVDEMKRGIESVKTIGGRSN----LIHKGGMTIIDDCYNANPVSMKASIDVLAA-AP-- 369

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHV 424
            GR+IAVLGDM E+GE  Q  H  + E      I  ++ +G     L  A+    +   V
Sbjct: 370 -GRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAGALSENLAQAVGKCSKETEV 428

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           HY +T D L   +   +  GD V+VK+S+  GF  ++  L
Sbjct: 429 HYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQL 468


>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
 gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
          Length = 458

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 227/456 (49%), Gaps = 42/456 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G+S D+R+I     +  +KG  ++GH F+  A +KGA   + +     +     +P+
Sbjct: 26  MIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEAFEKGAAAALWSKHEPNA--PTDVPL 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL +LA A R + +A II +TGS GKTTTK+M+   L ++ +     G+ NN
Sbjct: 84  IFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGKTTTKDMIASLLGTVYRVQKTEGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL R+  + ++ + E+GMS  GEI  L+ L  P +++IT I  +HL      E 
Sbjct: 144 HIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLSTLAEPDVSIITNIGESHLQELGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA+AK EI +GL++ G +F+ + D    LL+ +     +  + +FG +   D+     + 
Sbjct: 204 IATAKFEIVKGLKRDG-LFIYHGDE--PLLQTRVENANLSHVQTFGMAPTNDYYPLDIR- 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                   VQ  G + +V            +G H   N L  + +      D+D      
Sbjct: 260 --------VQADGTTFKVNRWPNETFRMPLLGRHHVMNALAAIAVARFAFVDID------ 305

Query: 318 SVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              H KEG         R          T+I+++YNA+P SM+AA+ +L Q++  G  ++
Sbjct: 306 ---HIKEGFLRLSVTKMRTEVIKRSDGVTIINDAYNASPTSMRAALELLGQLT--GYRKK 360

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSE 428
           IA++GDM E+GE   +FH  + E++    I +V   G    A+ +   +      V   +
Sbjct: 361 IAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLTYGERAKAIAERASKRFSEGRVRAYD 420

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               L   ++  +  GDV+++K+S       +I+LL
Sbjct: 421 DKSELAADVRGIIEAGDVILLKASRGMKLEEIISLL 456


>gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa]
          Length = 458

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 193/385 (50%), Gaps = 25/385 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA   +V  +    +    +P   
Sbjct: 26  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKT  KEML   L +     +   A  G+ 
Sbjct: 82  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTAVKEMLASILRTQAGDAESVLATRGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+I  AK EI EGL   GT  LN DD  F+  KA++    + T +S  + + ADF+    
Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259

Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q   +  M  +LQG + E  V  + +G H   N L        L   +D  +  L    
Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR       L      +ID+SYNANPASM AAI +LS  S    GR + VLGDM E+
Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           G  ++  H ++      +V +LY +
Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396


>gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
 gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
          Length = 458

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 217/435 (49%), Gaps = 26/435 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+G+ IDSR I     +  + G H DGH ++  A ++GA   +   D+       ++P+
Sbjct: 27  LVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQKDVPNP--PANVPL 84

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   +L +L+ + R   +A ++ ITGS GKTTTK+M+   LS   K     G++NN
Sbjct: 85  LIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFKVQKTEGNFNN 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H GVPLTL  +  D +  + E+GMS  GEI FLT + RP +A+IT I  AH+ N    E 
Sbjct: 145 HQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGSREA 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI EGL + G +    D+   +  +   +  GI+T  +FGK    D    +WKQ
Sbjct: 205 IADAKLEITEGLPENGLLIYMGDEPLLQ--ERVPNITGIRT-KTFGKGHGNDLYPVEWKQ 261

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +  S       G         I +++   +L    +++ L A +      +     + G
Sbjct: 262 ETSGSTFRTNASGD--------IDFYLP--VLGEYNVINSLAAILAGREFGMPFEEIRAG 311

Query: 326 RGKRYRCALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
            GK    A+            +I+++YNA+P SM+AAI ++ Q    G GR+I VLGDM 
Sbjct: 312 LGKTRLSAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQF--EGTGRKILVLGDML 369

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFI 437
           E+GE   +FH ++   L+   I  V+  G    ++A     P +  V   E    L   +
Sbjct: 370 ELGEKEAAFHREVGRDLNPEKIDFVFTYGKLGRLIAEACDFPDN-RVFAFEDKKRLIDML 428

Query: 438 QSSLVDGDVVVVKSS 452
           +  +  GD+V+VK+S
Sbjct: 429 KGKIGAGDLVLVKAS 443


>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
 gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
          Length = 454

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 223/441 (50%), Gaps = 16/441 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++ D+R ++    F  + G H++GH F   AV+ GA  V+ N           +PV 
Sbjct: 27  IHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKETNP--PEGVPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA +        ++ ITGS GKTTTK+M+   L +  + +   G++NNH
Sbjct: 85  LVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQTTYQVHKTDGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  MP   +  + E+GMS  GEI FL++L  P  AVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILSMPKGTEIAVLEMGMSAKGEIEFLSNLAEPDAAVITNIGESHMQDLGSREAI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL++ GT +   D+    L++ ++  L  + + +FG++ + D ++    Q 
Sbjct: 205 ADAKCEITKGLKEDGTFYYLGDEP---LIRERATQLS-QQVKTFGEADDCDIKVTHINQL 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +E +  E Q++G +   +   +G H  +N L  + I      +     + L      +  
Sbjct: 261 AEGT--EFQVEGYAQGFLIPVLGKHNVKNALAAIAIGQHFGLNERQIAQGL---MQTKLT 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +   T+I+++YNA+P SMKAAI ++  +   G   RI VLGDM EMG   +
Sbjct: 316 GMRLELFKTEKGITVINDAYNASPTSMKAAIDLVGDMD--GFANRILVLGDMLEMGSEEE 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG- 444
           ++H +L   +    I HV   G     + +   +S         MD   L  + + V G 
Sbjct: 374 TYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGDTRVFSFMDKEELKKKLADVAGP 433

Query: 445 -DVVVVKSSNSCGFYRLINLL 464
            DVV+VK+S       +I  L
Sbjct: 434 DDVVLVKASRGMRLEEVITAL 454


>gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS155]
 gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella baltica OS155]
          Length = 460

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 197/388 (50%), Gaps = 22/388 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR I     F A+KG  +DGHDF   A++ GA  ++V  ++   I  L +P  
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 82  ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +FGIFELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F + +  K+         SF +   A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   +   G+S +VV    G H   N L    +   L  ++    + LS  
Sbjct: 256 GHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVCIALGLNLTEIAEGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ +   H +L ++     I  ++ +G
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395


>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
 gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
          Length = 449

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 226/461 (49%), Gaps = 21/461 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A  G  +    +  VNG + D+R I     +  + G + DGH +I  A   GA  +
Sbjct: 5   EIIEATNGQLLSGDMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLGASSI 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +        +      V  V D L A++ +A   R+  +  ++ ITGSVGKT+TK+M+  
Sbjct: 65  IT----AHKVHYPDKNVILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKDMIYS 120

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            +S+  KT   +G+YNNHIG+PLT+ R+  + +  I E+GM+HLGEI  LT +  P +A 
Sbjct: 121 VVSTKYKTLKTLGNYNNHIGLPLTILRLQ-NEEVMILEMGMNHLGEIEHLTQIALPDVAA 179

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  AH+      E+I  AK EI  GL+  GT+ +N D+     + A+++ +      
Sbjct: 180 ITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVNAENYHM-----I 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G++++ D +    +   E S+ ++  QG+   V     G H   N L+ + I   L  
Sbjct: 235 RVGQNEDCDLKAIDVELRLEDSYFDIDYQGQRYHVHVPVSGEHFVYNALIAIAIGLSLDI 294

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D++  I  +  F   + R        N     +ID +YNAN  SMK++++VL+Q      
Sbjct: 295 DMNLCIAGVEHFELTKNRMDMIELKDN---IKVIDGTYNANLDSMKSSLAVLAQYPK--- 348

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVH 425
            R+IAVL DM E+GE  Q+ H ++   +   NI  +   G    +++    +L      H
Sbjct: 349 -RKIAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCVGEASCYIVEKAQSLGLKNAYH 407

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +    L  ++   L   D +++K SN      ++  L E
Sbjct: 408 FEDNQ-ALMTYLDEMLEPEDTILIKGSNGMHLKEVVEHLKE 447


>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 448

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 237/470 (50%), Gaps = 31/470 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   ++ +A+ G          V+  S++S++I+    F  +KG  +DGHDF+  A+Q 
Sbjct: 3   LW-LSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEALQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           GA   + + +    I ++ +P   V D L AL  LA   R + K  T+I +TGSVGKT+T
Sbjct: 62  GAISFISHKE----IENVRVPYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS   KT+   G+ NNHIG+P ++  MP D    +FE+GMS+ GEI  L+ + 
Sbjct: 118 KEYIFNVLSCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLSQIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P+I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +    
Sbjct: 178 KPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK-- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + + G    ++F+ +  ++   Q+    ++ G +  +      +H   N L  + I
Sbjct: 236 --RKVVTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--KSFNFHDIYNSLFAIAI 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +IL  D     +A+     ++ R KR    + +G  T++D++YNA+  SM +AI  + +
Sbjct: 290 GTILGIDRQLVKEAIR----QKERLKRRFEVIKKGSITIVDDTYNASTHSMLSAIDSICE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDA 417
                +G++I VLGDM E+GE S+  H  +   +    I  V  +G   F++   A K  
Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAKKKE 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             R+  V   E +D L    +  +     ++ K+S       +++  L+E
Sbjct: 402 GSRAYFVSKDECLDVL----KREVTTNSTILFKASRGIKLDEIVDEFLKE 447


>gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
 gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
          Length = 443

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 231/438 (52%), Gaps = 21/438 (4%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDF---ILHAVQKGAGLVVVNTDMVASIGSLSIPVF-- 86
           IDSR +     F  IKGP+ DGH +   +L   ++   +   N+  + ++ + +  +F  
Sbjct: 16  IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSIYLKNLKNSNRVIFCN 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L  +N   +   L +    I ITGS GKT+ K++L   L+  KK+Y    SYNN+
Sbjct: 76  STKDFL--INLARIKRYLLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKSYKSQKSYNNN 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL    ++ +F I+ELGM++ GEI  L+++++P++A+IT I  AHL N   I+ I
Sbjct: 134 IGLPYTLVNQNINSEFNIYELGMNNFGEIDSLSNILKPNLAIITNIGEAHLGNLGSIKNI 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AKAEI + + K GTI LN+D  FF  L  K        + SFG +  A      +K  
Sbjct: 194 AKAKAEIIKNITKQGTIILNHDCKFFNQL-KKISKKNKIKVLSFGSTSKATVS---YKVI 249

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +E++L     ++  + I  +M  NML+ + ++S    ++  +    +      GR
Sbjct: 250 SLNE-IEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFKLNIRKSKNYFNKIKNTRGR 308

Query: 327 GK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   ++R  +      +ID+SYN+NP+S+K++I+   ++S   + ++I V+GDM E+G+ 
Sbjct: 309 GNIVKFRKEI-----IIIDDSYNSNPSSLKSSINQFEKLST--KKKKILVIGDMLELGKF 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S+  H ++   LS    + + L G     +   +  +    Y E ++    + ++ L++ 
Sbjct: 362 SKKKHGEIGNYLSKMGFNRILLVGKDSKEIYKKIKSTFWCKYFENINIFSKYFKNVLIEN 421

Query: 445 DVVVVKSSNSCGFYRLIN 462
            +++ K+SN  G  +L+N
Sbjct: 422 SIIMFKASNGVGLNKLLN 439


>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 436

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 210/427 (49%), Gaps = 27/427 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G  IDSR +     F A++G  +DGHDF   A  +GA   +V   +    G   + V  
Sbjct: 25  SGFCIDSREVKEGNVFVALRGGRHDGHDFAQEAFSRGAVGAIVQRGIKVPKGKFYVLV-- 82

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            DD L AL ++A+  R      +I + GS GKTTTKEM+   LS I K      +YN+ I
Sbjct: 83  -DDTLEALRRIALYRRRLFTGRVIGVAGSAGKTTTKEMIAFLLSKIGKVCKTPKNYNSQI 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+P ++A    D  F + E+G S  G+++ L  L +PH+ VIT I   HL  F  ++++ 
Sbjct: 142 GLPFSIANFEEDCQFWVVEMGASQKGDVKNLVKLAKPHVRVITAIGEEHLETFGCLDDVI 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               EIFE +++     L          K  SH   +K + +FG  +  D Q    K   
Sbjct: 202 VGNGEIFEDMQERDVAVLP---------KYVSHCYELKNVITFG--EGGDLQATNIKLSK 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E    +V+    S+ V    +     +N L +LG++  L  +       L+ F P   R 
Sbjct: 251 EGITFQVEDVSLSLRVPSLAV----LENALCSLGVLKALGYNWKELSHHLANFSPAPQRF 306

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R    +G F +ID++YNANP S++ A+  LS      +G RIA+LGDM E+G +S++
Sbjct: 307 HLIR----KGSFLIIDDTYNANPPSVRKALLSLSLF----DGYRIALLGDMLELGPMSEA 358

Query: 388 FHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           +H ++ ++ +   I      G H+  A ++ L   +  ++S + +    ++ S + +G V
Sbjct: 359 YHREVGKLCAELGIDACIFYGTHMRFAYEECLRHGVLCYHSSSKEEALRYLSSLIREGSV 418

Query: 447 VVVKSSN 453
           ++VK S 
Sbjct: 419 ILVKGSR 425


>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 472

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 219/471 (46%), Gaps = 16/471 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N  +T  +++QA  G      P    +GI+IDSR+    + F AI G   DGHDF+  A+
Sbjct: 4   NVTFTLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAI 63

Query: 62  QKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             G   +V++         A +  L +    V D   AL K+A   R     +I AITGS
Sbjct: 64  NGGVRGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGS 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTKE+    L++  + +   G++NN IG+P TL  +     + + ELGM+H GEI 
Sbjct: 124 NGKTTTKELTAAVLAAKYRVHKSTGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIA 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  P I VIT + P HL     +E + +AK E+ E +    T  LN DD     L 
Sbjct: 184 RLTQICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENMANK-TAVLNLDDKLVSTLA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K      +T+  FGK   A  + +  K  +E     + L+ + + V     G  M  N 
Sbjct: 243 DKYQG---ETVL-FGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNA 298

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +             AL   +P +GR        +     LID++YNANPAS  AA
Sbjct: 299 LAAAAVGVSAGVSPKEIRDALETVNPVKGRQNVVSLGND---VQLIDDAYNANPASFAAA 355

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALK 415
           +  L  ++   +GR I  + DM E+G+ S   H++L  + +   +S +++SG++     K
Sbjct: 356 VMTLQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYAGWTAK 415

Query: 416 DALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            A    + +   + +    +   +  ++   D ++VK SNS G   ++  L
Sbjct: 416 GAREAGMGIDQVFIDEKPNIVTRLAEAVQAKDRILVKGSNSTGMSEVVQGL 466


>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis M50/1]
          Length = 470

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 213/456 (46%), Gaps = 33/456 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G  IDSR +     F A+KG   DGH FI    +KGA  V+   ++    G    P  
Sbjct: 28  IAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVLSEQELSDPAG----PYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+  LGA+ KLA   R      ++ ITGSVGKT+TKEM+   LS         G++NN 
Sbjct: 84  RVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQKYNVLKTEGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++    +  + E+G+S  GE+  L  +  P I VIT I   HL N    + I
Sbjct: 144 IGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265
             AK E FE L   GT  LN DD   + L  K    G   + Y  GK        +  K 
Sbjct: 204 LKAKTESFEHLTPEGTAVLNGDD---DKLCEKKMVNGKPVVFYGIGKEAKPAKTEQGEKY 260

Query: 266 CSEQSWMEVQLQGKSME----VVHHG----------IGYHMAQNMLMTLGIVSILTADVD 311
            +E+      ++   ++    V+H G           G H   N L  + +   L   VD
Sbjct: 261 LAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVD 320

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + +       GR       +++G  T+ID+ YNANP SMKA+I VL+  +P   GR+
Sbjct: 321 EMKRGIESVKTIGGRSN----LIHKGGMTIIDDCYNANPVSMKASIDVLAA-AP---GRK 372

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE 428
           IAVLGDM E+GE  Q  H  + E      I  ++ +G     L  A+    +   VHY +
Sbjct: 373 IAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAGALSENLAQAVGKCSKETEVHYFK 432

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           T D L   +   +  GD V+VK+S+  GF  ++  L
Sbjct: 433 TKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQL 468


>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
 gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
          Length = 451

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 224/463 (48%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L A  G  +       +N +S DSR + P   F  I G   + H F+  A++ G 
Sbjct: 5   TIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDGG 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    +          P+  V D L A+ ++A   R +    II ITGSVGKTTT+EM
Sbjct: 65  ASLTQEHEQAEG----PHPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTREM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    + +  +G+ N+ +GVPLTL R+      G+ E+GMS  G+I  L  ++RP+
Sbjct: 121 IAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV+T +  +H+      + I   K +I  GL + G ++LN D+        + H   + 
Sbjct: 181 AAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMI-----RKHIGYVT 235

Query: 246 TIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             Y  FG SK+  ++    K+ + Q+      +     V+ + +G H   N L  + +  
Sbjct: 236 HPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMREPVILNVLGNHNVSNALAAIALGL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T  + L+ F      G+R       G +T+ID++YNA+P SMKA + +LS   
Sbjct: 296 AYDVPMETIKRQLATF-----SGQRQNILKIHG-YTVIDDAYNASPDSMKAGLKILSDY- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GR++AVL DM E+G  S  +H ++ E L   +I+ ++++G       +A  +   S
Sbjct: 349 -QDSGRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKEYAEAAQKKNLS 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +  + D L  +++  L + DVV++K+SN    Y +   L
Sbjct: 408 LKTKWFSSNDELISYLKDYLKEHDVVLIKASNGMKLYEVAKAL 450


>gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
 gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
          Length = 458

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 193/385 (50%), Gaps = 25/385 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA   +V  +    +    +P   
Sbjct: 26  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKTT KEML   L +     +   A  G+ 
Sbjct: 82  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+I  AK EI EGL   GT  LN DD  F+  KA++    + T +S  + + ADF+    
Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259

Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q   +  M  +LQG + E  V  + +G H   N L        L   +   +  L    
Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLGGIVAGLQALQ 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR       L      +ID+SYNANPASM AAI +LS  S    GR + VLGDM E+
Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           G  ++  H ++      +V +LY +
Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396


>gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
 gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
          Length = 460

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 22/388 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR I     F A+KG  +DGHDF   A++ GA  ++V  ++   I  L +P  
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 82  ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +FGIFELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F + +  K+         SF +   A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   +   G+S +VV    G H   N L    +   L   +    + LS  
Sbjct: 256 GHKANADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ +   H +L ++     I  ++ +G
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395


>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 448

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 230/470 (48%), Gaps = 31/470 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   ++ +AI G          V   SI+S++I     F  +KG  +DGHDF+  A+Q 
Sbjct: 3   LW-LSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   +   D       + +P   V D L AL  LA  AR + +   ++ +TGSVGKT+T
Sbjct: 62  GAISFISQKDF----EDIKVPYIKVQDSLLALQSLACYARRKLNDLKVVGVTGSVGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + 
Sbjct: 118 KEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKLSQIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I +IT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +    
Sbjct: 178 KPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDILNLHKKELK-- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + + G    ++F+ +  ++   Q+    ++ G +  +      +H   N L  + +
Sbjct: 236 --RKVVTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--ESFNFHDIYNSLFAIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +IL  D     +A+     ++ R KR    + +G  T++D++YNA+  SM +AI  + +
Sbjct: 290 GTILEVDRQLVKEAIR----QKERLKRRFEVIKKGSITVVDDTYNASTHSMLSAIDSICE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDA 417
                EG++I VLGDM E+GE S+  H  +   +    I  V  +G   +     A K  
Sbjct: 346 F----EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAIYIFDEAKKKE 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             R+  V   E +D L    +  +     ++ K+S       +++  L+E
Sbjct: 402 GSRAYFVSKDECLDVL----KREVTSNSTILFKASRGVKLDEVVDEFLKE 447


>gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
 gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
          Length = 460

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 22/388 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR I     F A+KG  +DGHDF   A++ GA  ++V  ++   I  L +P  
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 82  ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +FGIFELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTSADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F + +  K+         SF +   A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   +   G+S +VV    G H   N L    +   L   +    + LS  
Sbjct: 256 GHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ +   H +L ++     I  ++ +G
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395


>gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
 gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
          Length = 455

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 214/440 (48%), Gaps = 18/440 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR++  +  F A+KG ++DGH+F+  A + GA  V+V  ++  ++  +      VD
Sbjct: 27  VSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAENGARAVLVERELPDAVAQII-----VD 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +   A+  +    R +     +A+TGS GKT+ KEM+   LS   +     G++NN IGV
Sbjct: 82  NSQRAMGDIGAYVREKLAPVCVALTGSNGKTSVKEMVATILSQQHQVLYTAGNFNNEIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     FG+FELG +H GEI + + LV+P +A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLQAGDQFGVFELGANHAGEIDYTSSLVKPSVAMVNNVASAHLEGFGSLAGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+EIF  +   G   +N DD+F  ++ A S  L   T  +F     AD +          
Sbjct: 202 KSEIFNHVATDGIAVINADDAFAAVMLAASQHL---TQLTFAIDAAADVKATALHADKGG 258

Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +  ++    +   VV    G H   N L    I   L   +    + LS+  P +GR  
Sbjct: 259 RYSFDISYADQVESVVLPLAGRHQVLNALAASSICLALGMSLSFINQGLSLLEPVKGRML 318

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             R     G  T+ID+SYNANPAS+ AAI  L +IS    G R  VLGD+ E+G+ +   
Sbjct: 319 PTRL----GRVTVIDDSYNANPASVGAAIDWLQEIS----GNRCLVLGDLGELGDNAALL 370

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H +L        +  ++  G        A   + H +  E ++ L  +I  S  D   ++
Sbjct: 371 HNELGAEAKAKGVDALFCVGELSEGASHAFGAAHHRNIDELVEKLMTYINESNAD-ITIL 429

Query: 449 VKSSNSCGFYRLINLLLEEF 468
           VK S S    R++  L   F
Sbjct: 430 VKGSRSARMERVVEALTMAF 449


>gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
 gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
          Length = 460

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 22/388 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR I     F A+KG  +DGHDF   A++ GA  ++V  ++   I  L +P  
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 82  ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +FGIFELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F + +  K+         SF +   A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   +   G+S +VV    G H   N L    +   L   +    + LS  
Sbjct: 256 GHKANADGCYRFMLNYLGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ +   H +L ++     I  ++ +G
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395


>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 454

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 228/450 (50%), Gaps = 30/450 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GIS D+R+I     F A++G ++DG ++I  A +KGA   VVN D   +I     PV
Sbjct: 25  MVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD+    +  LA       K  +IAITGS GKTTTK++++  L    K      +YNN
Sbjct: 82  IEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+  T+  +  D +  + E+G  + GEIR LT++  P IA+IT I  +HL N    E 
Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI EGL++ G   LN DDS    +K + + L  KTI +FG   ++D+++   K 
Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDSILREVK-QEYKLPEKTI-TFGIKPDSDYRMEMIKA 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S   +     ++E+    +G+H   N  M++ +  ++  D     K L      E 
Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDIAKGLKNI---EL 312

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R    L   F  L D SY +NP S+ + +   +    HG  R+IAVLGDM E+G+  
Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLE--TAYGLHGYSRKIAVLGDMLELGDNE 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436
            + H ++ + ++   I +V  +G     L + + +    +++E  D +F F         
Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 424 LQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-63q42]
 gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile ATCC 43255]
          Length = 457

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 223/464 (48%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K HA  +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHAYKL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT   FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 244 KT---FGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +  
Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
              +GRR+A+LGD+ EMGE+S+  H  L    S+ N   +   G + + + +   +    
Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
 gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
          Length = 453

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 225/452 (49%), Gaps = 36/452 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +  DSR + P + F A+KG  +DGHD+    + +GA  V+++ D+ A+      P 
Sbjct: 21  LIQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSEGATAVLLSHDVGAT------PA 74

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKTYACIG 141
             V+D   AL +LA   R +    + AITGS GKT+ KEML     +A  +     A  G
Sbjct: 75  VLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVKEMLAAILRVAAGADDAVLATQG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PLTL R+     + + E+GM+H GEI +LT + RP +A+I     AHL    
Sbjct: 135 NLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLTRIGRPDVALINNATAAHLGGLG 194

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADF 258
            +E +A AK EIFEGL   G   +N DDSF  L ++ +   G + I  FG +     A +
Sbjct: 195 SVEGVAKAKGEIFEGLADDGVAVINADDSFAGLWQSLA---GRRRIVRFGLNAGDVTAGY 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            L         +  ++QL   + E   H    G H  +N L    +   +   +D   + 
Sbjct: 252 AL-------HSAGCDLQLSTPAGERALHLPVPGLHNIRNALAATAVALSMGVSLDAVAEG 304

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F   +GR +R       G   LID++YNANPASM+AAI VL+  S    G+R+ V+G
Sbjct: 305 LAGFAGVKGRLQRKPG--RHGAL-LIDDTYNANPASMRAAIDVLASHS----GKRLLVVG 357

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           DM E+GE   + H +L        +  +  L      A++   P + H    ET++GL  
Sbjct: 358 DMGELGENEAALHAELGAYAKAAGVDALHALGRLSAGAVEAYGPGASH---HETVEGLAA 414

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  +L     V+VK S      R+I+LL ++
Sbjct: 415 ALLPALDADTTVLVKGSRFMRMERVIDLLQDQ 446


>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
 gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
          Length = 487

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 221/460 (48%), Gaps = 25/460 (5%)

Query: 20  GIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--M 74
           G+ PQ     +  +  DSRS+   + F A +G  +D H F+  A+ +GA   +V  D  +
Sbjct: 29  GVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKALAQGAVCAIVQEDYRL 88

Query: 75  VASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             +     +PV  GV D L A  +LA   R R    +IAITGS GKTTTKEM+   ++  
Sbjct: 89  PPAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGSNGKTTTKEMVAQVVAQR 148

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            KT    G+ NN IGVP TL ++       + E+G+   G+   L  + RP I VIT I 
Sbjct: 149 WKTLKTEGNLNNRIGVPQTLFQLAPRHQAAVIEMGVDQQGQTTRLCEIARPTIGVITNIG 208

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           P HL  F  +E  A AKAE+ + L + G + LN DD +F+ L A++       + +FG S
Sbjct: 209 PDHLEFFGSMEGSAQAKAELLDHLPQDGAVVLNADDEYFDYLAARAQC----RVVAFGIS 264

Query: 254 KNADFQ---LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             A  +   +R  ++      + V  + +  E+     G H   N L    +  +L    
Sbjct: 265 PKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEIRIRAQGQHNVSNALAAAAVGYVLGLSG 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L+ F P      R + +L+ G   +I++ YNANPASMKAA+ +L+++   G G+
Sbjct: 325 TAIAEGLAKFRPA---AMRSQISLSHG-VQVINDCYNANPASMKAAVQLLAEL---GRGK 377

Query: 371 R-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVH 425
           R IA LGDM E+G  S+  H ++   L+   I H+   G     L +   +    S  + 
Sbjct: 378 RSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACGVLGRELAEGARQAGMASDRIT 437

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      +   +  GDVV+VK+S      +++  ++
Sbjct: 438 ELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVEAVM 477


>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
          Length = 469

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/390 (33%), Positives = 201/390 (51%), Gaps = 26/390 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R I+    F A+ GP+++GH F   A Q GA  ++ +  + A +     PV 
Sbjct: 24  ITNVSTDTREISADSLFIALVGPNFNGHVFANEARQNGAVAMIASEPVEAHM-----PVI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL  L    + +     + ITGS GKTT KEM T  L       +  G++NN 
Sbjct: 79  MVEDTKAALGALGAYVKQKVAPKTVGITGSSGKTTVKEMTTAILKECGSVLSTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + ++ + E+G +H+GEI + T LV+P +A I   A +HL  F  +  +
Sbjct: 139 IGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTGLVKPDVATIVNAAASHLEGFGSLFGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF----GKSKNADFQLRK 262
           A AK+EIF+GL K+GT  LNYD  F++    K   L  + IYSF       K AD+   +
Sbjct: 199 ARAKSEIFKGLSKSGTAILNYDSQFYDFWLGK---LDNELIYSFSLNSAPGKGADYSASQ 255

Query: 263 ----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               +  C+    M   +   ++E+   GI  H   N L+   +   + A ++     L+
Sbjct: 256 VGLAFNGCA-HFIMHTPIGEMNIELTLPGI--HNVGNALLAAALSINVGASLENVRDGLA 312

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                +GR +  + +       L+D+SYNAN AS+ AAI +LS      EGRR+ VLGDM
Sbjct: 313 KIQHVKGRLEVKQLSEK---VRLLDDSYNANVASVTAAIKLLSSY----EGRRVLVLGDM 365

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+G+ ++ +H  + E+    +I   +  G
Sbjct: 366 AELGDQARHYHEQVGELAKSESIEMFYTLG 395


>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
 gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
          Length = 452

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 213/448 (47%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR++ PQ  F   KG H DGH F+  ++Q GA      T           P+ 
Sbjct: 26  IKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSIQDGAAAAFYQTGQEIDSSLEEQPLI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +LA A     +  +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 86  YVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLKTQFKVKKTQGNYNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D D  I E+GMS   EI  L+ +  P IAVIT I  +H+ +      I
Sbjct: 146 IGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWK 264
           A AK+EI  GL+  G    + D+   +      H   +K   + S G  +N  +      
Sbjct: 206 AKAKSEIVTGLKDNGIFIYDGDEPLLQ-----PHVAQVKHAKLISVGLEQNNTY------ 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318
            C+  S     +        H+    +G H  +N  + + +   + +    +   IK + 
Sbjct: 255 VCTIDSNQNDGIAFNINNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQ 314

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           +       G R    + +   T+I+++YNA+P SMKA+I  LS +    EGR+I +L D 
Sbjct: 315 L------TGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM----EGRKILILADC 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFI 437
            E+G+ SQ  H ++ E L   NI  ++  G     + +   P   H  + E+ + +   +
Sbjct: 365 LELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQPYVSHAQHFESKEAIIEQL 424

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  LV GD V+VK S       ++N ++
Sbjct: 425 KKELVAGDKVLVKGSRGNKLEDIVNAII 452


>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 448

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 229/466 (49%), Gaps = 23/466 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   ++ +AI G          V   SI+S++I     F  +KG  +DGHDFI  A+Q 
Sbjct: 3   LW-LSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   +   D       L +P   V+D L AL  LA   R + +   ++ +TGSVGKT+T
Sbjct: 62  GAISFISQKDF----DDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + 
Sbjct: 118 KEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +    
Sbjct: 178 KPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK-- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + + G    ++F+ +  ++   Q+    ++ G +  +      +H   N L  + +
Sbjct: 236 --RKVVTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--ESFNFHDIYNSLFAIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +IL  D +   +A+     ++ R KR    + +G  T++D++YNA+  SM +AI  + +
Sbjct: 290 GTILGVDRELIKEAIR----QKERLKRRFEVIKKGSITIVDDTYNASTHSMLSAIDSICE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D + +  
Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEVKKKD 401

Query: 423 HVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               Y  T D     ++  +     ++ K+S       +++  L+E
Sbjct: 402 GTKAYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447


>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 553

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 203/413 (49%), Gaps = 36/413 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G S DSR+I   EAFFA+KG ++DGH F+  AV+ GA  +VV+    A +    +P   V
Sbjct: 36  GTSTDSRTIKRCEAFFALKGENFDGHAFVERAVRAGAVALVVSDLKCAELWQAELPTILV 95

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA--CIG-SYNN 145
           +D L AL KLA   R     T++AITGSVGKT+T+EM+  AL   + T A  C G + NN
Sbjct: 96  EDTLTALQKLAAYYRQNYLHTLVAITGSVGKTSTREMIAAAL---RPTLAVSCTGENLNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP T+ ++    D  + E+GM H G++  L+ L +P IAVIT I   H+        
Sbjct: 153 EIGVPQTVLKVRSACDVAVVEMGMDHAGDLTKLSRLAQPDIAVITNIGYCHIEQLGSQMA 212

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------- 258
           I  AKAEI  GL+  G + LN DD F   L A+     IK  +    +   D        
Sbjct: 213 IMRAKAEIINGLKADGVLLLNADDPFLRQLAAEQKG-KIKQAFVALNTCPPDLPGDCLVA 271

Query: 259 ---------------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
                          +L++     +   ME  +    +  +   + G H   N L  L  
Sbjct: 272 TDVKIEVDGCASFIIKLQQAPDLEKYGTMEAFVDSNRLPRIKLPVPGEHHVINALFGLAT 331

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L   +  A   L  F      G R R  +N     LI+++YNA P S++A +  L  
Sbjct: 332 AHLLHQPLTLAANGLRDFSVI---GNRQRI-MNADGVVLINDTYNAAPESIRAGVKTLCF 387

Query: 363 ISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           ++ H E RR IAVLG + E+G ++   H +L   L+  +++ +WL G +V A+
Sbjct: 388 LA-HSEKRRAIAVLGGIAELGNMADRLHYELGRYLATADLAEIWLCGPYVAAV 439


>gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
 gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
          Length = 492

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 155/496 (31%), Positives = 237/496 (47%), Gaps = 65/496 (13%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +L +A+ G  + +  P G     ++ DSR +     F A  G   DGH F+  A   
Sbjct: 5   TAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVPQAAAA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSVGK 119
           GA L +   +++   G+   P   V DV+ A+  LA  V  RLR+    T++A+TGSVGK
Sbjct: 65  GAVLNLTEREVLDDTGA-PYPSVVVADVVQAMGALASHVLQRLRAAHPVTVVAVTGSVGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L    ++   T A   SYN  +GVPLT+     D +F + E+G +H+G IR+L 
Sbjct: 124 TTTKDLLHGIFAAEGPTVAPRNSYNGEVGVPLTVFTAEQDTEFFVVEMGATHIGNIRYLC 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRP +  +  +  AH   F G+E IA AK E+ E L   GT  LN DD+    ++ ++
Sbjct: 184 EMVRPDVGAVLCVGSAHAGEFGGVENIARAKGEMVECLAPEGTAVLNDDDARVRPMRERT 243

Query: 240 HALGIKTIYSFGKSKN----ADFQLRKWKQ--------CSEQSWMEVQLQGKSMEVVHHG 287
            A     + SFG+            R W +        C   S+      G +  V    
Sbjct: 244 TA----RVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCP--SFTLHFPDGSAFPVHSRL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----GFFTLID 343
           IG H   N+L    +        +     L      EG G R R  + +       T+++
Sbjct: 298 IGVHHVTNLLAAASVAWAAGVAPERIAAGL------EGTGARSRWRMERTERSDGVTVVN 351

Query: 344 ESYNANPASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ++YNANP SMKAA+  L+Q+    + H   R IAV+G M E+G+ + S H DL ++L   
Sbjct: 352 DAYNANPQSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAHADLGQLLVRL 411

Query: 400 NISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLF--------------LFIQSSLVDG 444
           NIS       HV+A+ D A P    V+ + T++G +                +++ L  G
Sbjct: 412 NIS-------HVVAVGDLARP----VYTAATLEGSWGEEALWVPDAEAAEEHLRAVLRPG 460

Query: 445 DVVVVKSSNSCGFYRL 460
           D+V++KSSN+ G   L
Sbjct: 461 DIVLLKSSNAAGLNHL 476


>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
 gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 144/469 (30%), Positives = 228/469 (48%), Gaps = 24/469 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++++A  G  I       +NG+S DSR++ P + F A+ G  YDGHDFI +AV  GA
Sbjct: 4   TVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+++ D         IP+  V+D L AL +LA   R     T++AITGS GKTTTKE 
Sbjct: 64  SAVMLSKDT----ADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKEF 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS         G+ NN IG+PLT+  +     + + E+GMS LGEI  L  + RPH
Sbjct: 120 IYAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLADIARPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H+      + I  AK E+F+         LN DD     L +    L  +
Sbjct: 180 IGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTLHS---VLPCR 236

Query: 246 TIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +Y  + GK       +R +K      +  V   G+  ++  +  G+H   N L    ++
Sbjct: 237 VLYFSTRGKGDIKVLNIRLYKN-GYYCYTAVLPDGQREDIYLNIAGFHNVYNSLA--AVL 293

Query: 304 SILTADVD-TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             + A+V    IKA +   +    R + ++   +     LID++YNANP SM+AAI VL 
Sbjct: 294 VGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPD---IQLIDDTYNANPDSMRAAIEVLC 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +      R+IAVLGDM E+G ++++ H +L  +++   I  +   G     + D    S
Sbjct: 351 DLD---SARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDVLVTVGRLAHFIADGAEAS 407

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +++   + D    ++   +  GD +++K S+      ++  L E
Sbjct: 408 GMDAHNIYRFNSNDDAISWLDEHITHGDAILIKGSHGMHMDEIVKYLQE 456


>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-66c26]
 gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-76w55]
 gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-97b34]
 gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-37x79]
 gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
 gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile QCD-32g58]
 gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
          Length = 457

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/464 (30%), Positives = 223/464 (48%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR  + Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K H   +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHVYKL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT   FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 244 KT---FGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +  
Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
              +GRR+A+LGD+ EMGE+S+  H  L    S+ N   +   G + + + +   +    
Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 456

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 224/446 (50%), Gaps = 20/446 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  V G+SID+R+I   + F   +G   +GH F+  A +KGA   +   D       L 
Sbjct: 20  PETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGAAASLWMIDEPNPPAHL- 78

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P+  V+D   AL K+A   R   +AT I ITGS GKT++K++L  ALS   K    IG+
Sbjct: 79  -PLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTSSKDILAGALSPYFKVQKTIGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN +G+P+T+ ++  D +  + E+GMS  GEI FLT+L RPH A+IT I  AH+ +   
Sbjct: 138 FNNQLGLPITILQLDEDTEVSVLEMGMSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGS 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA AK EI +GL + G +F + D+   + L AK+  L  +   +FG S+  +    +
Sbjct: 198 REGIAKAKFEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKTQ---AFGFSQELNLAASQ 254

Query: 263 WKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K  ++ S   V+  +QG     V   +G H  +N L  + +   L    +   +AL   
Sbjct: 255 IKATAQGSSFHVEGLIQGDFFISV---LGEHQVKNTLSAMLVSKSLGLTDEQIREALKKV 311

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + R +        G    I+++YNA P SM AAI  + Q +   E  +  VLGDM E
Sbjct: 312 VLTDMRMQLVPV----GDLLFINDAYNAAPTSMHAAIQFVEQTTIRNE--KWLVLGDMLE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSET-MDGLFLF 436
           +G   +  H  +A  +    IS+V L G  +  L + L  +    H+ YSE     +   
Sbjct: 366 LGNEEKKMHEGIAGHIHPEEISYVCLYGPRMKWLYNKLQETFDAEHLVYSENEYAPIIEK 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462
           IQS   +  +++VK S      ++I+
Sbjct: 426 IQSHATNESILLVKGSRGMKLEKIIH 451


>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
 gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
          Length = 457

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 219/447 (48%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++G++ D+R +   + F  +KG  +DGH F+  A +  AG+  V  D        + 
Sbjct: 24  QTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFE--AGVAAVLWDRSVPNPPENH 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL +LA A        +I +TGS GKTTTK+M+   L +  + +   G++
Sbjct: 82  AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P  AVIT I  +H+ +    
Sbjct: 142 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL++ G +    D+   +     +++   KT   +G   + D+QL+  
Sbjct: 202 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGTHNDYQLQDV 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q  E +   ++   K+  +    +G H   N +  +   +      + A K LS     
Sbjct: 255 SQSEEGTHFTIKGIEKTFFIPI--LGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKV- 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R          ++I+++YNA+P SMKAAI +   +   G G+++ VLGDM E+G+
Sbjct: 312 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           L ++FH +   V+S   I  V+    L  F          +    HY+E  D L   ++ 
Sbjct: 368 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKD-LLQAVKE 426

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   GD+++ K+S       ++  L+E
Sbjct: 427 NASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 457

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 24/464 (5%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++++A+ G  I G +   F N ++ DSR +   + F  + G  +DGHD+I+ + ++G   
Sbjct: 8   EIVKAVNGVLISGDLNTEFSN-VTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQGVSG 66

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +   D     G + I V   +D L AL  L+   R +     + ITGSVGKT+TK+M++
Sbjct: 67  CLTQKDTAGYEGKVVIKV---EDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTKDMVS 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+         G++NN IGVPLT+  +    +  + E+GMS  GEI  LT +V+P IA
Sbjct: 124 SVLNKKFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTSIVKPDIA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +H+      + I  AK EIFEGL+  G + LN DD+    LK   + L  +T+
Sbjct: 184 IITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLK---NLLNYRTV 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +G     D+Q        EQ +  E+ +  ++ +V     G H   N L  +     L
Sbjct: 241 F-YGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAIAAGIEL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V   I+ +  F P    GK     ++     +I+++YNA+P SM+AAI+VL  I+  
Sbjct: 300 NIPVKDIIEGIGEFSP----GKMRLNIMDHNGIKIINDAYNASPQSMEAAINVLKDIA-- 353

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRS 421
           G+ R IAVLGDM E+G+++   H+ + +      +S++   G +       ALK     +
Sbjct: 354 GDNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAVGENGKNIAEGALKAGAEEA 413

Query: 422 IHVHYSETMD-GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H+ +  + G FL   +    GDV+VVK S       ++NLL
Sbjct: 414 RVFHFKDNSEAGKFLLDFTK--PGDVLVVKGSRGMKMEEIVNLL 455


>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 220/471 (46%), Gaps = 32/471 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T     +  QG  +G    G V+ +  DSR   P + F A+KG  +D HDF+   V +
Sbjct: 1   MMTLSQAARFAQGRLVG--ADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVAR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +V +   +A    +       DD   AL +LA   R    A  I +TGS GKTT K
Sbjct: 59  GAAALVRDGFELAGASLIQAG----DDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVK 114

Query: 124 EMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EML   L   +      A  G++NN IG+PLTL ++     + + E+GM+H GE+ +LT 
Sbjct: 115 EMLAAILRAHAGADAVLATAGNFNNDIGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLTG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++     AH  +F   E++A AKAEIFEGL   G   +N DD+   L +A   
Sbjct: 175 LTRPQVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLIDAGVAVVNADDANLPLFRA--- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G     SFG    AD   R     +  S   +      + V     G H  +N L   
Sbjct: 232 AAGSHRQLSFGLGL-ADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +    + LS F   +G   R +   +    T+ID+SYNANP SMKA I VL
Sbjct: 291 AAALALEVPLAAIAEGLSAFAGAKG---RLQIKQSPRGLTVIDDSYNANPDSMKAGIDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R  V+GD+ E+GE + + H ++ E   L  I  ++       AL +A  R
Sbjct: 348 AGLP----GPRCFVMGDIGELGEAAPALHAEVGEHARLRGIEQLF-------ALGEASRR 396

Query: 421 SIHVHYS-----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++          +++D L   + S L  G  V+VK S      R++  L++
Sbjct: 397 AVQAFGGAGQGFDSIDELLECLDSRLASGTAVLVKGSRFMRMERVVEHLMQ 447


>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile 630]
 gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Clostridium
           difficile]
          Length = 457

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 143/464 (30%), Positives = 222/464 (47%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K H   +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHVYKL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT   FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 244 KT---FGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +  
Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
              +GRR+A+LGD+ EMGE+S+  H  L    S+ N   +   G + + + +   +    
Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens 200]
          Length = 460

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 227/451 (50%), Gaps = 29/451 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR +     F A+KG  +DGHDF   A++ GA  ++V  ++     +L+IP  
Sbjct: 24  IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVEREL-----ALNIPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 79  IVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    ++G+FELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F +++  K+     K ++ F + + A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADVMSVKARPY--KQLH-FSQQEGAAKRRIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   ++  G+S +V     G H   N L    +   L   +      LS  
Sbjct: 256 GHKADADGCYRFMLKYLGESCDVKLPLAGRHQVSNALAAASVCIALGLSLTDIAHGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRIRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQ 438
           +G+ +   H +L ++     I  ++ +G    AL     ++    + E++  L   L   
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG----ALSQHTSQAFGAEHHESVAVLVEKLIKH 423

Query: 439 SSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
            + + G V V+VK S S    R+++ L   F
Sbjct: 424 INQLPGQVTVLVKGSRSAAMERVVDGLTVAF 454


>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 448

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 202/392 (51%), Gaps = 32/392 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   ++ +A+ G          V   SI+S+SI     F  ++G  +DGHDF+  A+Q 
Sbjct: 3   LW-LSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEALQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   +   D       L +P   V D L AL  LA  AR + +   ++ +TGSVGKT+T
Sbjct: 62  GAISFISQKDF----DDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS   + +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + 
Sbjct: 118 KEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIT 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +    
Sbjct: 178 KPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEFK-- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-----GIGYHMAQNML 297
             + + + G    ++F+ +  ++            G S EV ++        +H   N L
Sbjct: 236 --RKVVTIGIENESNFRAQNVQK---------HQNGFSFEVDNYTYFIKSFNFHDIYNSL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + +IL  D +   +A+     ++ R KR    +N+G  T++D++YNA+  SM +AI
Sbjct: 285 FAIAVGTILEIDRELIKEAIR----QKERLKRRFEVINKGSITVVDDTYNASTHSMLSAI 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
             + +     +G++I VLGDM E+GE S+  H
Sbjct: 341 DSICEF----DGKKILVLGDMLELGEFSEEEH 368


>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
 gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
          Length = 463

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 229/474 (48%), Gaps = 42/474 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+   + G   G+  + F   V G+S D+R+I     +  +KG  ++GH F+  A+ 
Sbjct: 10  TLRDIQSMVDGR--GLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAID 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+             +PV  VDD L AL +LA   R +    +I ITGS GKTTT
Sbjct: 68  KGASAVLWAE--TEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTT 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M+   L++  K     G+ NNHIGVPLTL R+  D +  + E+GMS+ GEI  L+++ 
Sbjct: 126 KDMIAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  AVIT I  +HL      E IA AK EI  GL+K G +F+ + D    + +     L
Sbjct: 186 EPDAAVITNIGESHLQELGSREGIAQAKLEILSGLKKNG-LFVYHGDEPLLVNRVPDLPL 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHMA 293
             + +  FG+  + D+  +          + VQ  G +   VH           +G H  
Sbjct: 245 P-EHVLRFGQGSDNDYYPKA---------VHVQANGTTF-TVHQAPNRSFFLPILGKHHV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPA 351
            N L  + +        +   +A S          R R  L   +  +T+I+++YNANP 
Sbjct: 294 YNALAAIAVARFFHVSWEKIQEAFSQLQV-----TRMRMELIETKKGWTIINDAYNANPT 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           SMKAA+ +L +++  G  ++IAVLGDM E+G+    FH ++  +L    + +V+  G   
Sbjct: 349 SMKAALQLLHELT--GYEKKIAVLGDMLELGDQEVEFHREIGAMLRPEMVDYVFTYGALA 406

Query: 409 FHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            H+ LA +   P    V   E    L   + + +  GDV+++K+S       L+
Sbjct: 407 RHIALAAQPFFPDG-RVKAYEDKQSLAKDLLAVVSSGDVILLKASRGMKLEELL 459


>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 455

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 222/456 (48%), Gaps = 40/456 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G++ID R + P  AF A  G   DGH F+  A ++GA + VV  D+  ++G   
Sbjct: 23  PNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALG--- 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P   V + L A+  LA   R + +  ++ ITGS GKTTTKEM+   LS+I        +
Sbjct: 80  -PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGKTTTKEMVAAVLSAIGPCVYTSAN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +G+PLT+ +        + E+GM  LG+I  L  + RP+I VIT I   H+     
Sbjct: 139 QNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGS 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA AK E+   L K G   LN DD +   ++ ++ A     I  +G S+  D     
Sbjct: 199 QENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRTTA----RILWYGMSEGCDI---- 250

Query: 263 WKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTADVDTA 313
             + +  +W +   +G S EV   HG        +G H   N L  + +   L   ++  
Sbjct: 251 --RATSVAWSQ---EGMSFEVDTPHGTATMRIRLLGQHNVMNALAAIAVGQTLGLSLEDI 305

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L     + GR +     ++ G  T+ID++YNA+P+S+ A++ VL +I+    G R+A
Sbjct: 306 EKGLGRVEAQRGRLR----LVDAGDVTVIDDAYNASPSSVAASLEVLERIAR--PGHRVA 359

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSE 428
           VLGDM E+GE++   H D+   ++   +  +   G         A +  +P    V +  
Sbjct: 360 VLGDMLELGEMAVQAHRDVGRRVASAGVDRLLCVGELAAEMARAAEEAGVP---EVRHFN 416

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++ L   ++S L  GDVV+VK+S      R ++ +
Sbjct: 417 GLEELLASVRSYLQPGDVVLVKASRGVQLDRAVDAI 452


>gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 481

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 217/447 (48%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++G++ D+R +   + F  +KG  +DGH F+  A +  AG+  V  D        + 
Sbjct: 48  QTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFE--AGVAAVLWDRSVPNPPENH 105

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL +LA A        +I +TGS GKTTTK+M+   L +  + +   G++
Sbjct: 106 AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 165

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P  AVIT I  +H+ +    
Sbjct: 166 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 225

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL++ G +    D+   +     +++   KT   +G   + D+QL+  
Sbjct: 226 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGAHNDYQLQDV 278

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q  E +   +  +G         +G H   N +  +   +      + A K LS     
Sbjct: 279 SQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKV- 335

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R          ++I+++YNA+P SMKAAI +   +   G G+++ VLGDM E+G+
Sbjct: 336 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 391

Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           L ++FH +   V+S   I  V+    L  F          +    HY+E  D L   ++ 
Sbjct: 392 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKQFEKDRVSHYTEKKD-LLQAVKE 450

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   GD+++ K+S       ++  L+E
Sbjct: 451 NASKGDLILFKASRGMKLEEIVKDLIE 477


>gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thiomicrospira crunogena XCL-2]
 gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 474

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/417 (33%), Positives = 208/417 (49%), Gaps = 32/417 (7%)

Query: 5   WTFHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           W   DL++A+ G      +G  P  F + +S D+R++     + AIKG H+DGH FI  A
Sbjct: 3   WNLADLVEAVNGVLAGELLGDEPVVFTS-VSTDTRTLKSGALYIAIKGEHFDGHAFIGEA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
           V++GA  V+++  M        +P   VDD   A  + A   R + S   ++ +TGS GK
Sbjct: 62  VRQGAVAVLISEPM-----ETVVPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK +L   LS   +  +  G+ NN  G+P TL  +    D+ + E+G +H+ EI +LT
Sbjct: 117 TTTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVKEIAYLT 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P +AVIT  A AHL  F  +E +   K EI +G+ + G   LN D   FE    KS
Sbjct: 177 QIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVCEGGKAVLNTDSPGFEYWIEKS 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSMEVVHHGI-GYH 291
             LG+  I +FG+++ A+ Q+  + Q   Q       +W  +    +  EVV   + G+H
Sbjct: 237 QQLGLSVI-TFGQARFANVQVTDFTQAENQITFTLDLNWQNI----RQAEVVTMPVLGFH 291

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N          L          L  F    GR ++ +  L QG   LID+SYNANP+
Sbjct: 292 NAMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSK--LPQGL--LIDDSYNANPS 347

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           S+KAAI  L Q+     G     LG M E+G  S++ H D+A       ++H+ L G
Sbjct: 348 SVKAAIDALVQLP----GPSAVCLGGMAELGAESEALHQDVAAFAKAKGVTHLLLFG 400


>gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           sp. W3-18-1]
 gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens CN-32]
 gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. W3-18-1]
 gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 226/451 (50%), Gaps = 29/451 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR +     F A+KG  +DGHDF   A++ GA  ++V  ++     +L+IP  
Sbjct: 24  IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVEREL-----ALNIPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+  +    R +     +A+TGS GKT+ KEM+   LS+  +     G++NN 
Sbjct: 79  IVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKYQVLYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    ++G+FELG +H GEI + + LVRP++A++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261
           A AK+EIF  L+  GT  +N DD+F +++  K+     K ++ F + + A     D    
Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADVMSVKARPY--KQLH-FSQQEGAAKRRIDVIAT 255

Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             K  ++  +   +   G+S +V     G H   N L    +   L   +      LS  
Sbjct: 256 GHKADADGCYRFMLNYLGESCDVKLPLAGRHQVSNALAAASVCIALGLSLTDIAHGLSQL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR +  +     G   LID+SYNANP S+ AAI+ L +IS +    R  VLGD+ E
Sbjct: 316 TPVKGRMQPSQL----GRIRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQ 438
           +G+ +   H +L ++     I  ++ +G    AL     ++    + E++  L   L   
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG----ALSQHTSQAFGAEHHESVAVLVEKLIKH 423

Query: 439 SSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
            + + G V V+VK S S    R+++ L   F
Sbjct: 424 INQLPGQVTVLVKGSRSAAMERVVDGLTVAF 454


>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 223/463 (48%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L A  G  +       +N +S DSR + P   F  I G   + H F+  A++ G 
Sbjct: 5   TIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDGG 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    +          P+  V D L A+ ++A   R +    II ITGSVGKTTT+EM
Sbjct: 65  ASLTQEHEQAEG----PHPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTREM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    + +  +G+ N+ +GVPLTL R+      G+ E+GMS  G+I  L  ++RP+
Sbjct: 121 IAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV+T +  +H+      + I   K +I  GL + G ++LN D+        + H   + 
Sbjct: 181 AAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMI-----RKHIGYVT 235

Query: 246 TIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             Y  FG S++  ++    ++   Q+      +     V+ + +G H   N L  + +  
Sbjct: 236 HPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKEPVILNVLGDHNVSNALAAIALGL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T  + L+ F      G+R       G +T+ID++YNA+P SMKA + +LS   
Sbjct: 296 AYEVPMETIKRQLATF-----SGQRQNILKIHG-YTVIDDAYNASPDSMKAGLKILSDYK 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GR+IAVL DM E+G  S  +H ++ E L   +I+ ++++G       +A  +   S
Sbjct: 350 --DSGRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKKYAEAAQKKNLS 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +  + D L  +++  L + DVV++K+SN    Y +   L
Sbjct: 408 LKTKWFSSNDELISYLKDYLKENDVVLIKASNGMKLYEVAKAL 450


>gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 221/474 (46%), Gaps = 20/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T  D+L A  G  +        +G+S DSR++ P E F  ++G  +DGHD++  A  +
Sbjct: 2   LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPGELFIPLRGERFDGHDYLDAARAR 61

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  L +V    +A       +    VDD L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVRLTLVERQWLAGRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+   +     G+ NN IGVP  L R+     + + E+GMS  GEI  L  +V
Sbjct: 122 KEMLAAILARTGEGLKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEFGEIDRLAEIV 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT   PAHL     +E +A AK E+F  LE   +   N DD       +     
Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDPLIARCPSPE--- 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G+K + SFG  +  D      +   ++     ++L    + V  H  G H   N L    
Sbjct: 239 GVKRV-SFGL-RGGDVTAEDVENLGKKGQRFTLRLPNGRVTVTLHAFGSHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +   + L  F P     +R+      G   LID+SYNANPASM AA++ L 
Sbjct: 297 AARVLGVAPEEIARGLGEFMPY---ARRFNLE-EVGDVVLIDDSYNANPASMAAALTTLR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
           +I   G GR +AVLGDM E+G  ++  H  L   L+   +  +++ G         AL+ 
Sbjct: 353 EIK--GSGRAVAVLGDMLELGIGAEEAHRQLGR-LAATCVDRLYVLGAMAGTVAAGALEG 409

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            L    HV  +     +   ++ +   G++++VK S      R+   + E F A
Sbjct: 410 GLEER-HVTIAADHGEIVADLRRTAATGEMILVKGSRGMAMDRVAEGIREAFAA 462


>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 458

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 218/469 (46%), Gaps = 41/469 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W+  ++   + G   G        G+S D+RS+   + F A+ GP YDGH F+   +  
Sbjct: 3   IWSLAEIASKVGGELHG--GDTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSDDL-P 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            AG+      MV+ +    +P   VDD   AL +LA A R     T++A+TGS GKTT K
Sbjct: 60  AAGV------MVSRLLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML+        T A  G+ NN IGVPLTL  M  +  + + E+G +H GEI +LT L R
Sbjct: 114 EMLSAIAREHAPTLATRGNLNNDIGVPLTLLEMARNHRYAVVEMGANHHGEIAYLTSLAR 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   PAHL  F  IE ++ AK EI+ GL   G   +N DD + +     +    
Sbjct: 174 PDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGPDGVAVINADDIYADYWYGLNPG-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + SFG    A+    +W+       + + + G+   +     G H A N L      
Sbjct: 232 -RRVISFGLDHVAEVS-GEWQAPGS---LRLHMNGRVHALELAFPGRHNALNALAAAAAA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +  ++ L+  HP  G   R      +G   L+D+SYNANPAS +AA+ VLS  
Sbjct: 287 LGAEIPEEAILRGLARVHPVSG---RLVAVPGRGGALLLDDSYNANPASTRAALEVLSG- 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             HG G R  VLGDM E+G+  ++ H ++        I H     FH +      P S H
Sbjct: 343 --HG-GERCMVLGDMGELGDEGETLHAEIGARARELGIEH-----FHAVG-----PLSAH 389

Query: 424 --------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     +      L   ++  L  G  V+VK S S    R++  L
Sbjct: 390 AVRAFGEGAQHHPDQAALIEALRPMLHAGMTVLVKGSRSARMERVVQAL 438


>gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
 gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 471

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 238/442 (53%), Gaps = 12/442 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           +  +S+ I P + F A++  +  DGH F+  A+ +GA  V+V + ++ +  +  I +  V
Sbjct: 29  VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIV-SKLIDNNANDKIIL--V 85

Query: 89  DDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           ++ + AL++LA   R + K  T I ITGSVGKT+TKE++    S+  KT+A   ++NN +
Sbjct: 86  NNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTYYKTFASRKNFNNLL 145

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ L LA +P++ ++ IFEL  S  G ++ L  ++  +IAV+T I  AH   F+ +E + 
Sbjct: 146 GMLLNLASVPINTEYAIFELSTSSPGGLQKLVKILPLNIAVLTNINSAHTEFFNSLEHLT 205

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265
            AK EIF GL   G   +N D  F+       + LGI  +++FG  + A+  +    +  
Sbjct: 206 EAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINKLGINNVFTFGTHQEANSNITNYYYDA 265

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +++S + +   G   +     +GY  A N+   + + +I   +++   + ++     EG
Sbjct: 266 DNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVMLVSNICKINLNKVTEVINTLRNYEG 325

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           RGK Y    +     +ID+ YNANPASMK A+ +L QI      R++A+LGDM E+G  +
Sbjct: 326 RGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLGQIKAK---RKVAILGDMLELGNNT 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG 444
           +  H++L   +  YNI HV   G  +  + + LP  + + HY+   +     +   L D 
Sbjct: 383 KEHHLNLVTYIKKYNI-HVIAIGSLMKNVYELLPAELKLSHYNNINELPVDQLLPLLHDK 441

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           D V++K SN    +++I  LLE
Sbjct: 442 DYVLIKGSNRMRLWQVIENLLE 463


>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 481

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 217/447 (48%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++G++ D+R +   + F  +KG  +DGH F+  A +  AG+  V  D        + 
Sbjct: 48  QTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFE--AGVAAVLWDRSVPNPPENH 105

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL +LA A        +I +TGS GKTTTK+M+   L +  + +   G++
Sbjct: 106 AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 165

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P  AVIT I  +H+ +    
Sbjct: 166 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 225

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL++ G +    D+   +     +++   KT   +G   + D+QL+  
Sbjct: 226 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGTHNDYQLQDV 278

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q  E +   +  +G         +G H   N +  +   +      + A K LS     
Sbjct: 279 SQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKV- 335

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R          ++I+++YNA+P SMKAAI +   +   G G+++ VLGDM E+G+
Sbjct: 336 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 391

Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           L ++FH +   V+S   I  V+    L  F          +    HY+E  D L   ++ 
Sbjct: 392 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKD-LLQAVKE 450

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   GD+++ K+S       ++  L+E
Sbjct: 451 NASKGDLILFKASRGMKLEEIVKDLIE 477


>gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 462

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 221/451 (49%), Gaps = 23/451 (5%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G +  +S DSR+I  Q  F A+KG  +DGHDF+  A++ GA  ++V+  +V    +  I 
Sbjct: 22  GVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLVDHLLVDHPFAADIA 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V D   A+ K+    R       +A+TGS GKT+ KEML   LS   +     G++N
Sbjct: 82  QIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEMLATILSQHHQVLFTAGNFN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVPLTL R+    ++G+FELG +H GEI + + LV P +A++  +  AHL  F  +E
Sbjct: 142 NEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSSLVLPQVALVNNVGNAHLEGFGSLE 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A AK+EIF  L   GT  +N DD F + +  +S     +    F +  N D  +    
Sbjct: 202 GVAQAKSEIFNHLTPDGTAIINADDKFADFMLQQSQG---RKHLRFSREMNVDADVTATD 258

Query: 265 QCSEQS---WMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             ++ +      +   G+  EVV   + G H   N L    +   L   +    +  ++ 
Sbjct: 259 IVADANGCYRFTLTFDGQQ-EVVQLPLAGLHQVSNALAAASMCIALDISLYDIAQGFALL 317

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR + +    + G   LID+SYNANP S+ AAI+ L Q     +G R  VLGD+ E
Sbjct: 318 KPVKGRMQPH----DLGRVLLIDDSYNANPTSVSAAINWLQQ----RDGYRCLVLGDLGE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ +   H  +   +    I  ++  G       +A       H+    + L + +Q  
Sbjct: 370 LGDNAAPLHASIGLQVKNAAIESLFCCGQLSANTSEAFGSE---HFC-AQEPLIVALQKQ 425

Query: 441 LVD--GDV-VVVKSSNSCGFYRLINLLLEEF 468
           L    G++ V+VK S S    R+++ LL+ +
Sbjct: 426 LASTTGNITVLVKGSRSAAMERVVDSLLDAY 456


>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
 gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 457

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 217/447 (48%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++G++ D+R +   + F  +KG  +DGH F+  A +  AG+  V  D        + 
Sbjct: 24  QTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFE--AGVAAVLWDRSVPNPPENH 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL +LA A        +I +TGS GKTTTK+M+   L +  + +   G++
Sbjct: 82  AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P  AVIT I  +H+ +    
Sbjct: 142 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL++ G +    D+   +     +++   KT   +G   + D+QL+  
Sbjct: 202 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGTHNDYQLQDV 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q  E +   +  +G         +G H   N +  +   +      + A K LS     
Sbjct: 255 SQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKV- 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R          ++I+++YNA+P SMKAAI +   +   G G+++ VLGDM E+G+
Sbjct: 312 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           L ++FH +   V+S   I  V+    L  F          +    HY+E  D L   ++ 
Sbjct: 368 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKD-LLQAVKE 426

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   GD+++ K+S       ++  L+E
Sbjct: 427 NASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
 gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
          Length = 450

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 222/449 (49%), Gaps = 42/449 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  D+R I P E F A++G ++DGHDF+ HA+ +GA   +V++D      +  + V  V 
Sbjct: 33  IQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQGAIAAIVDSDY----ENADVAVLQVR 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +L    R R    +I +TGSVGKTTTKE++   L++  + +   G++NN IGV
Sbjct: 89  DTLQAYQQLGRWWRDRLNIPVIGVTGSVGKTTTKELIAAVLATEGRVHKTFGNFNNEIGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + D+ + E+ M   G+IR LT + RP+I VIT +  AH+      E IA A
Sbjct: 149 PKTLLELDTEHDYAVVEMAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSEEAIARA 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+   + +     LN+D+    LL A +  +    + ++G S   D Q       ++ 
Sbjct: 209 KCELLAEMPEDSVAILNHDNP---LLMATAQQVWSGEVVTYGLS-GGDIQ----GVLTDN 260

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             ++V      M +     G H A N L  L +  +L  D  T    + V  P  GR +R
Sbjct: 261 QTIKV----GEMRLPLPLPGRHNASNFLAALAVAQVLGIDWSTLQNGVKVNMPT-GRSQR 315

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +    +     L+DE+YNA P +M AA+ +L+        R+IAVLG M E+GE S   H
Sbjct: 316 FTLPHD---IILLDETYNAAPEAMTAALQLLADTPGK---RKIAVLGAMKELGERSLQLH 369

Query: 390 IDLAEVLSLYNISHVWLSGFHVLAL-KDA---------LPRSIHVHYSETMDGLFLFIQS 439
             + E      +  + L G  VL   KDA         +P      +++ +  L  F+Q+
Sbjct: 370 QRVGET-----VQRLQLDGLLVLVDGKDAQAIAQSAEGIPSECFTTHADLVARLKTFVQA 424

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               GD ++ K+++S G  R++N    EF
Sbjct: 425 ----GDRILFKAAHSVGLDRVVNQFRAEF 449


>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
 gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
          Length = 448

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 187/384 (48%), Gaps = 21/384 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
             G+S D+RS+ P   F A+KG ++DGH F+  A +KGA   ++   +       S+P  
Sbjct: 21  AQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQTI-----EDSLPQV 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R R +  ++A+TGS GKTT KEM+   L       A  G+ NN 
Sbjct: 76  EVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASVLGGAGSVLATQGNLNND 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +     F + E+G +   EI +L+ LVRP +A+IT   PAHL  F  ++ +
Sbjct: 136 IGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRPQVALITNAGPAHLDGFGDLKGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIF+G+   G   LN DD  F   +  +  L    +  FG +++A+         
Sbjct: 196 ARAKGEIFQGVNPGGVAVLNADDPHFSYWRDLAGEL---PVIGFGLTQSAEVTAHHLAAH 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           SE S   +        V     G H   N L    +   L  D D    AL+      GR
Sbjct: 253 SEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVAIALGLDRDQISAALAALPSIPGR 312

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R A   G   L+D++YNANPAS+KAA+ +L++      G R  VLGD  E+GE + 
Sbjct: 313 LQIRRGA---GGMRLLDDTYNANPASLKAALELLAEFP----GERFLVLGDFAELGEEAA 365

Query: 387 SFH------IDLAEVLSLYNISHV 404
             H         A V  LY + H+
Sbjct: 366 PLHRMMGKQARAAGVNRLYTLGHL 389


>gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
 gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
          Length = 458

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 190/386 (49%), Gaps = 27/386 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+I P + F A+ GP +DGHD++     KGA   +V  +    +    +P   
Sbjct: 26  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143
           V D   AL +L    R +    + A+TGS GKTT KEML   L +     +   A  G+ 
Sbjct: 82  VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+IT    AH+  F G 
Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVGLTRPHVAIITNAGTAHVGEFGGP 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK 262
           E+I  AK EI EGL   GT  LN DD  F   KA+++    + + +F  +   ADF    
Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFATWKARANG---RPLLTFSLEQAQADFHAAD 258

Query: 263 WKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             Q   +  M  +L G + E  V  + +G H   N L        L   +D  +  L   
Sbjct: 259 L-QRDARGCMGFRLHGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQAL 317

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR       L      +ID+SYNANPASM AAI +L   S    GR + VLGDM E
Sbjct: 318 QPVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILGGFS----GRTVLVLGDMGE 370

Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401
           +G  ++  H ++      +V +LY +
Sbjct: 371 LGSWAEQAHREVGAYAAGKVSALYAV 396


>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 452

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 213/448 (47%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR++ PQ  F   KG H DGH F+  ++Q GA      T           P+ 
Sbjct: 26  IKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTGQEIDSSLEEQPLI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +LA A     +  +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 86  YVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLKTQFKVKKTQGNYNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D D  I E+GMS   EI  L+ +  P IAVIT I  +H+ +      I
Sbjct: 146 IGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWK 264
           A AK+EI  GL+  G    + D+   +      H   +K   + S G  ++  +      
Sbjct: 206 AKAKSEIVTGLKDNGIFIYDGDEPLLQ-----PHVAQVKHAKLISVGLEQHNTY------ 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318
            C+  S     +        H+    +G H  +N  + + +   + +    +   IK + 
Sbjct: 255 VCTIDSNQNDGIAFNINNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQ 314

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           +       G R    + +   T+I+++YNA+P SMKA+I  LS +    EGR+I +L D 
Sbjct: 315 L------TGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM----EGRKILILADC 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFI 437
            E+G+ SQ  H ++ E L   NI  ++  G     + +   P   H  + E+ + +   +
Sbjct: 365 LELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQPYVSHAQHFESKEAIIEQL 424

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  LV GD V+VK S       ++N ++
Sbjct: 425 KKELVAGDKVLVKGSRGNKLEDIVNAII 452


>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 448

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 203/387 (52%), Gaps = 22/387 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   ++ +A+ G          V   SI+S+SI     F  +KG  +DGHDF+  A+Q 
Sbjct: 3   LW-LSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEALQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   +   D       L +P   V D L AL  LA  AR + +   ++ +TGSVGKT+T
Sbjct: 62  GAISFISQKDF----DDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS   + +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + 
Sbjct: 118 KEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +    
Sbjct: 178 KPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEFK-- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + + G    ++F+ +  ++   Q+    ++ G +  +      +H   N L  + +
Sbjct: 236 --RKVVTIGIENESNFRAQNVQK--HQNGFSFEVGGYTYFI--KSFNFHDIYNSLFAIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +IL  D +   +A+     ++ R KR    +N+G  T++D++YNA+  SM +AI  + +
Sbjct: 290 GTILEIDRELIKEAI----LQKERLKRRFEVINKGSITVVDDTYNASTHSMLSAIDSICE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +G++I VLGDM E+GE S+  H
Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEH 368


>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. m3-13]
          Length = 453

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 225/453 (49%), Gaps = 48/453 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-GAGLVVVNTDMVASIGSLSIPV 85
           V G+S D+R     + +  I G +++GH F+  A++K GA       D       L++ V
Sbjct: 27  VEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKKGAVASFWQKDQPEPPTDLNLIV 86

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD + AL  LA + R +    ++ ITGS GKTTTK+M+T  L +  + +   G+YNN
Sbjct: 87  --VDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTKDMVTSVLETTFRVHKTAGNYNN 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  M  D +  + E+GMS  GEI  L+ + +P  AVIT I  +H+ +    E 
Sbjct: 145 HIGLPLTILSMKEDTEVAVLEMGMSGRGEIELLSSIAKPDAAVITNIGESHMQDLGSREG 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWK 264
           IA AK EI  GL++ G + +N D+         +  +G KT +  FG   N D+Q +   
Sbjct: 205 IAEAKLEIAAGLKQDGKLIINGDEPLL------TDRVGGKTNVIPFGLKANNDYQAK--- 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHM----AQNMLMTLG---IVSILTADVDTAIKAL 317
                            +++  GIG H      +  +  LG   + + L A +   +  +
Sbjct: 256 -----------------DIMLKGIGTHFIIEETEYFIPVLGAHNVTNALAAIIVGELFGV 298

Query: 318 SVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           S  + K+G       G R       G +T+I+++YNA+P SM+AA+ +L  +   G G++
Sbjct: 299 SEENRKKGLEQLVITGMRNEVVETSGGWTVINDAYNASPTSMRAALDLLGSLD--GYGKK 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---SGFHVLALKDALPRSIHVHYSE 428
           IAVLGDM E+G++ ++FH ++ + +   N+ +V+     G  +      +    HV    
Sbjct: 357 IAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVFTFGALGMEIAKGAQEVMEPSHVKPFM 416

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               L   ++  L +GDVV+VK S       +I
Sbjct: 417 NKQELTRELRPLLENGDVVMVKGSRGMKLEEVI 449


>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
 gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
          Length = 457

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 221/464 (47%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++  T+ +N DD F   LK K H   +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTLKEKEHVYKL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT   FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 244 KT---FGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +  
Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
              +GRR+A+LGD+ EMGE+S+  H  L    S+ N   +   G + + + +   +    
Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
 gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
          Length = 460

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 230/473 (48%), Gaps = 25/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++F+++ +A     +     G    +SIDSR+I   + F A+KG  +DGHDF+++A +KG
Sbjct: 4   FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++        S    VF V D   A   LA   R+R    ++A+TGS GKTTTK+
Sbjct: 64  ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LSS     +   + NN IG+ LTL  +  + D  + E+GM   G+I+ L ++ +P
Sbjct: 124 MISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIKELCNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSH 240
            I VIT +  +H+      E IA AK E+ + L + G   LN DDSF     E  K +  
Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKGRVI 243

Query: 241 ALGIKTIYS-FG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G+   Y+ +G K    +F  +    C ++++ +V L+          +G H   + L 
Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAF-KVNLK---------LLGIHNVYDALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 IL  DV    + LS F P+ GR    +  +      +ID++YNANP SM+ A+ 
Sbjct: 294 ATSTARILGVDVTKIQRVLSDFSPRAGR----QSLIEINGIKIIDDAYNANPLSMEMALR 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA 417
            L QIS      +  VL DM E+GE  + FH ++  +   +     + +        K A
Sbjct: 350 SLKQISAK---NKYLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGA 406

Query: 418 LPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             + + + YS +T       I +    GDV ++K S+S   Y + +LL EE  
Sbjct: 407 KEKGMKMIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459


>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
          Length = 457

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 235/480 (48%), Gaps = 47/480 (9%)

Query: 3   PLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            L  F +++ A+ G   I      + N IS D+R I     F A+KG +++ +D+I+ A 
Sbjct: 2   ELLKFEEIVNAVGGKVHINSGNHKYTN-ISTDTRKITKDSIFIALKGDNFNANDYIVDAS 60

Query: 62  QKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            KGA L +V+  +   S  + +  +  V++   AL  LA   R +    II ITGS GKT
Sbjct: 61  DKGANLCIVDEINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK++   ALSS  K +   G++NN +G+PL +  +    D  + E+GMS+  EI  L  
Sbjct: 121 STKDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFEEIHRLAK 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P IA+IT I  +H+ N    E I  AK EI +   K   + +N ++   + +K+  +
Sbjct: 181 VAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNKENDLLKNVKSNEY 240

Query: 241 ALGIKTIYSFGKSKNADFQLR---------KWKQC--SEQSWMEVQLQGKSMEVVHHGIG 289
            L      S G  K+ D+            ++  C   E+    + + GK      H I 
Sbjct: 241 KL-----MSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGK------HNIL 289

Query: 290 YHMAQNMLMTLGIVSILTADVD-----TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             M       L IV+  + D++       IK LSV         R       G FT++D+
Sbjct: 290 NSM-------LAIVAGRSLDIEYDKLKQGIKNLSV------TSMRLDIVKKDG-FTIVDD 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYNA+P SMKAAI V++ I  +   R+IA+LG M E+G+ S  FH ++AE     NI  +
Sbjct: 336 SYNASPDSMKAAIDVITTIKGN---RKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFL 392

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G    A K+    +++     T++    FI S+L + D+++VK+S S  F  ++N L
Sbjct: 393 ITVGEFNEAYKEGYNNNLNFKEFNTIEKAADFITSNLKEKDIILVKASRSMQFEYIVNKL 452


>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
 gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 196/394 (49%), Gaps = 25/394 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VADVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARA- 233

Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             G   + SF +S   ADF      R  + C       +   G+++ V  + +G H   N
Sbjct: 234 --GAHKVVSFARSNPKADFHASDIGRDARGCPS---FTLHGAGETVAVQLNVLGEHNVSN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        +   +      L+   P +GR    + A N     +ID+SYNANP SM A
Sbjct: 289 ALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPTSMCA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AI +L+  S    GR + VLGD+ E+G+ ++  H
Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375


>gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 448

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 226/461 (49%), Gaps = 22/461 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++  AI G          V   SI+S++I     F  +KG  +DGHDFI  A+Q GA   
Sbjct: 7   EIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISF 66

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLT 127
           +   D       L +P   V+D L AL  LA   R + +   ++ +TGSVGKT+TKE + 
Sbjct: 67  ISQKDF----DDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIF 122

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + +P I 
Sbjct: 123 NVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPDIG 182

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +      + +
Sbjct: 183 VITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK----RKV 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G    ++F+ +  ++   Q+    ++ G +  +      +H   N L  + + +IL 
Sbjct: 239 VTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--ESFNFHDIYNSLFAIAVGTILG 294

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +   +A+     ++ R KR    + +G  T++D++YNA+  SM +AI  + +     
Sbjct: 295 VDRELIKEAIR----QKERLKRRFEVIKKGSITIVDDTYNASTHSMLSAIDSICEF---- 346

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-Y 426
           +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D + +      Y
Sbjct: 347 DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVICTGKDAFYIFDEVKKKDGTKAY 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             T D     ++  +     ++ K+S       +++  L+E
Sbjct: 407 FVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447


>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
 gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
          Length = 445

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 232/471 (49%), Gaps = 37/471 (7%)

Query: 4   LWTFHDLLQA-IQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           L T  DLLQA +QG  H +G+     V  +  DSR + P   F A++G  +DGHDFI  A
Sbjct: 4   LQTVADLLQAPLQGDPHLLGLP----VQALCTDSRRLQPGSVFVALRGERFDGHDFIPQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+       S   +  P F V D L A  ++A A R +    ++AITGS GKT
Sbjct: 60  LSKGAVAVI-------SQRPVEGPHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  ALS          ++NN IGV  TL R+  +  F + E+ M   GEIR L  
Sbjct: 113 TTKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRRLAQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP  A+IT I  AH+      E IA+AK E+ + L + G   LN +D    LL A + 
Sbjct: 173 MARPTHALITHIGTAHIGRLGSREAIAAAKCELLQELGQ-GIAVLNGEDP---LLLATAA 228

Query: 241 ALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +L      ++G ++     LR +W   ++     V ++G ++ V     G H A N +  
Sbjct: 229 SLWSGKTLTYGLAQG---DLRGEWDPQAQT----VTVEGLTLPVPLP--GRHHALNWMGV 279

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L  + +   + L +  P EGR +  + A   G   + DE+YNA+P +M AA+ +
Sbjct: 280 LAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLA---GDVEIWDETYNASPEAMIAALHL 336

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA 417
           L+Q +     RR A+LG M E+GE +   + ++    +   +  VWL      +  L D 
Sbjct: 337 LAQTAGK---RRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLDPDGEMQPLVDE 393

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            P +  V   E    L   +Q  +  GD ++ K++ +    R+++  L+ +
Sbjct: 394 KP-AAEVERFEEASALVEGLQQQVRAGDRLLFKAARAVELERVLHRFLQAW 443


>gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 455

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 186/375 (49%), Gaps = 32/375 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+SIDSR+IAP + F A+ GP +DGHD++     KGA   +V  ++  S    ++P   
Sbjct: 26  DGVSIDSRAIAPGQLFVALAGPRFDGHDYLNEVAAKGAVAALVEREVTNS----TLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   AL +L    R      + AITGS GKTT KEML   L +     A  G+ NN +
Sbjct: 82  VNDTRQALGQLGALNRAAYGNPVAAITGSSGKTTVKEMLASILRTRGPVLATRGNLNNDL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +    + ELG S LGEI +   + +PH+AV+     AH+  F G E+I 
Sbjct: 142 GVPLTLLELAPEHSAAVIELGASRLGEIAYTVGMTKPHVAVLNNAGTAHVGEFGGPEKIV 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI EGL+  G   LN DD  FE+ K ++           G+ K   F L       
Sbjct: 202 EAKGEIIEGLDADGVAVLNLDDKAFEIWKTRA-----------GERKVLTFALSNLAANF 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVSILTADVDTA---------IKAL 317
             S ++   +G     +H   G    Q N+L T  + + L A              +  L
Sbjct: 251 YASDLDRDARGCPAFNLHSPDGAERVQLNLLGTHNVANALAAAAAAHALGVSLPGIVAGL 310

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           +   P +GR       L      +ID++YNANP+SM AA+ +L+  S    GR + VLGD
Sbjct: 311 NAVQPVKGRSV---AQLASNGMRVIDDTYNANPSSMCAAVDILAGFS----GRTVLVLGD 363

Query: 378 MCEMGELSQSFHIDL 392
           + E+GE +Q  H D+
Sbjct: 364 IGELGEWAQQGHHDV 378


>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
 gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
          Length = 457

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 224/455 (49%), Gaps = 51/455 (11%)

Query: 24  QGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           QG    GI  D+R + P E F A++G ++DGH F+  A+++GA  +   TD V       
Sbjct: 38  QGLTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGA--IAAITDQVLPG---D 92

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYAC 139
            P   V D L A   L    R   +  +IA+TGSVGKTTTKE++   L    S+ KT A 
Sbjct: 93  FPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTKELIAAVLGLQGSVLKTEA- 151

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             +YNN IGVP TL ++  D  + + E+GM  LGEI  LT + RP IAVIT +  AH+  
Sbjct: 152 --NYNNEIGVPKTLLQLTTDHAYAVIEMGMRGLGEIASLTRIARPDIAVITNVGTAHIGR 209

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               E IA AK E+   +  T    LN D+    L++  +     KT+ S+G +      
Sbjct: 210 LGSREAIAQAKCELLAEMPTTSVAVLNADNPL--LIETATEVWSGKTL-SYGLTAG---D 263

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAI 314
           LR              LQG  +EV          G H A N L  L +  +L  D    +
Sbjct: 264 LRG------------HLQGDMLEVEGQCFPLPLPGQHNALNYLAALAVAKLLGLDWKPLL 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + L V  P EGR K +R   +     L+DE+YNA P SM+AA+ +L+Q       RR+AV
Sbjct: 312 QGLQVNLP-EGRAKSHRLGED---VVLLDETYNAGPESMEAALRLLAQTPGK---RRLAV 364

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSET 429
           LG M E+G+ +   H  + + +   N+  + +      G  ++     LP      ++E 
Sbjct: 365 LGPMRELGDYALELHYQIGQKVRELNLDGLLVLDMGEEGTALVKGAAPLPSQQFATHTEL 424

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++    ++Q S+  GD ++ K+S+S G  R++N L
Sbjct: 425 VN----YLQDSIQPGDRLLFKASHSVGLDRVVNSL 455


>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 460

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 23/449 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  VNG+  D+R + P + F  + G H DGHDFI +A++ GA   +  +D    +  ++I
Sbjct: 25  QTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAIKGGAVATLWASDHTDRL-PVAI 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACI 140
           P   VDD L A  KL+     +    +IA+TGS GKTTTK+M+   LS   ++ KTY   
Sbjct: 83  PALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVLSGEFNVTKTY--- 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ LV P +A+IT I  AH+  F
Sbjct: 140 DNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFF 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              ++IA AK EI  GL+  G    + D+    LL  ++  +    + +FG+S   D   
Sbjct: 200 GTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQVDFSKM-TFGRSHTDDVFA 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K       +  EV L     +V    +G +   N L  + +  +        I+ LS F
Sbjct: 256 TKTSDGQYNTSFEVNLW-PDKKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHF 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + R +      N+G   L D  YN+NP + +  ++  SQ      GRRI VLGDM E
Sbjct: 315 DLTKNRTEWLTG--NKGEKILSD-VYNSNPTAAREVLTAFSQTDVM--GRRIVVLGDMLE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFL 435
           +G+ S   H  LA  +    I+ V+L G  + AL + L     P ++H + ++ +D L  
Sbjct: 370 LGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQADQLDQLSD 429

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  +   D V++K+S+      ++  L
Sbjct: 430 DLKRDIQPNDEVMLKASHGIHLENIVEKL 458


>gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
 gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
          Length = 430

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 194/382 (50%), Gaps = 23/382 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R+I     FFA+KG +++G++F   A+++GA  VVV+           I V   
Sbjct: 15  GVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKEHYILV--- 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +VL +L KLA+  R      I+AITGS GKTTTKE++   L    KT A  G+ NNHIG
Sbjct: 72  QNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M    +FGI E+G +H  EI FL  +  P    IT    AHL  F  +E +  
Sbjct: 132 VPLTLLSMDDHTEFGIVEMGANHPLEIEFLCTIANPDYGYITNFGKAHLEGFGSLEGVVK 191

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           AK E+++ L E+   IFLN DD      +  +H       +SFG+S  AD QL      S
Sbjct: 192 AKTELYKNLQERHKLIFLNIDDEVQRKHENYNHT------FSFGESNEADVQL------S 239

Query: 268 EQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            QS +   QL   + +      G + A+NM   L I        +    ALS + P   R
Sbjct: 240 YQSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKFEEIQTALSNYSPDNNR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +    A N    T+I ++YNANP SM AA+    Q+  + +  +IA+LGDM E+G  + 
Sbjct: 300 SQTLNTASN----TIIMDAYNANPTSMHAALENFKQLKTNKQ--KIAILGDMFELGSSAV 353

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           + H  +A  +   + +  +L G
Sbjct: 354 TEHQIIANYVQNSDFAETYLLG 375


>gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pseudoalteromonas atlantica T6c]
 gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 471

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/425 (32%), Positives = 206/425 (48%), Gaps = 27/425 (6%)

Query: 12  QAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           Q +QG  I     I     + G+S D+R I   + F A+ GP++DGH FI  A   GA  
Sbjct: 11  QQVQGEIIRSENSIAEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQTSGAIA 70

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           VVV+  +   +  +      V D   AL  L  A +       +AITGS GKTT KEM+ 
Sbjct: 71  VVVSRQVETPLAQIL-----VSDTKAALGLLGQAVKREVAPKTVAITGSSGKTTVKEMVA 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K  A  G++NN IGVPLTL R+    +F + ELG +HLGEI + T LV+P +A
Sbjct: 126 AILSRRGKVLATKGNFNNDIGVPLTLLRLEAQHEFAVVELGANHLGEIAYTTELVKPDVA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I   A AHL  F  +  +A AK+EIF+GL K G    N D  F+     K   L  +  
Sbjct: 186 TIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQ-- 243

Query: 248 YSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             F     AD+  +        C++  ++ V   GK + +     G H   N L++  + 
Sbjct: 244 -RFSTQGEADYYAQDVVLGLSGCAD--FLMVTPIGK-VSITLPLPGIHNVSNALVSAALA 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A++      L       GR +  + +   G   ++D++YNAN AS+ AAI +L   
Sbjct: 300 IEVGANLQDVQAGLQYMAQVSGRLQVKQLS---GQVKVLDDTYNANVASVNAAIDLLGSF 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    GR+I VLGDM E+GE ++ +H  + E      I  ++  G    +  D   +S +
Sbjct: 357 A----GRKILVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSASDVYQKSGY 412

Query: 424 VHYSE 428
            H+S+
Sbjct: 413 -HFSD 416


>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 460

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 23/449 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  VNG+  D+R + P + F  + G H DGHDFI +A++ GA   +  +D    +  ++I
Sbjct: 25  QTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAIKGGAVATLWASDHTNRL-PVAI 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACI 140
           P   VDD L A  KL+     +    +IA+TGS GKTTTK+M+   LS   ++ KTY   
Sbjct: 83  PALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVLSGEFNVTKTY--- 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ LV P +A+IT I  AH+  F
Sbjct: 140 DNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFF 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              ++IA AK EI  GL+  G    + D+    LL  ++  +    + +FG+S   D   
Sbjct: 200 GTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQVDFSKM-TFGRSHTDDVFA 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K       +  EV L     +V    +G +   N L  + +  +        I+ LS F
Sbjct: 256 TKTSDGQYNTSFEVNLW-PDKKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHF 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + R +      N+G   L D  YN+NP + +  ++  SQ      GRRI VLGDM E
Sbjct: 315 DLTKNRTEWLTG--NKGEKILSD-VYNSNPTAAREVLTAFSQTDVM--GRRIVVLGDMLE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFL 435
           +G+ S   H  LA  +    I+ V+L G  + AL + L     P ++H + ++ +D L  
Sbjct: 370 LGDKSSQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQADQLDQLSD 429

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  +   D V++K+S+      ++  L
Sbjct: 430 DLKRDIQPNDEVMLKASHGIHLENIVEKL 458


>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 23/449 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  VNG+  D+R + P + F  + G H DGHDFI +A++ GA   +  +D    +  ++I
Sbjct: 25  QTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFIENAIKGGAVATLWASDHTDRL-PVAI 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACI 140
           P   VDD L A  KL+     +    +IA+TGS GKTTTK+M+   LS   ++ KTY   
Sbjct: 83  PALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVLSGEFNVTKTY--- 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ LV P +A+IT I  AH+  F
Sbjct: 140 DNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFF 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              ++IA AK EI  GL+  G    + D+    LL  ++  +    + +FG+S   D   
Sbjct: 200 GTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQVDFSKM-TFGRSHTDDVFA 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K       +  EV L     +V    +G +   N L  + +  +        I+ LS F
Sbjct: 256 TKTSDGQYNTSFEVNLW-PDKKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHF 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + R +      N+G   L D  YN+NP + +  ++  SQ      GRRI VLGDM E
Sbjct: 315 DLTKNRTEWLTG--NKGEKILSD-VYNSNPTAAREVLTAFSQTDVM--GRRIVVLGDMLE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFL 435
           +G+ S   H  LA  +    I+ V+L G  + AL + L     P ++H + ++ +D L  
Sbjct: 370 LGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQADQLDQLSD 429

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  +   D V++K+S+      ++  L
Sbjct: 430 DLKRDIQPNDEVMLKASHGIHLENIVEKL 458


>gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
 gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
          Length = 455

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 182/367 (49%), Gaps = 22/367 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+SIDSRS+   E F A+ GP +DGHD++     KGA   +V  +    + ++ +P   
Sbjct: 26  SGVSIDSRSVGAGELFVALAGPRFDGHDYLADVQAKGAVAALVERE----VANVDLPQLV 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL +L    R      ++AITGS GKTT KEML   L +    +A  G+ NN +
Sbjct: 82  VADSRLALGQLGALNRAGYDKPVVAITGSSGKTTVKEMLACILRTRGPVHATRGNLNNDL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL  +       + ELG S +GEIR+   L +P + +I     AH+  F G E+I 
Sbjct: 142 GAPLTLLEIAPQHSAAVIELGASRIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPEKIV 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQL----RK 262
            AK EI EGL + GT  LN DD  F + KA++ A     + SF +S   ADF      R 
Sbjct: 202 EAKGEILEGLGEGGTAILNLDDKAFAIWKARAAA---HKVISFARSDARADFHATDIGRD 258

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            + C       +   G S+ V  + +G H   N L        +   +      L+   P
Sbjct: 259 ARGCPS---FTLHGAGASVAVQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLNAMQP 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R    +      +ID+SYNANP SM AAI +L+  S    GR + VLGD+ E+G
Sbjct: 316 VKG---RTVAQIAPSGVRVIDDSYNANPTSMCAAIDILAGFS----GRTVLVLGDIGELG 368

Query: 383 ELSQSFH 389
           + ++  H
Sbjct: 369 QWAEEGH 375


>gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
 gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
          Length = 470

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 219/474 (46%), Gaps = 20/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L++  D+ +A  G   G      V G+S DSR++ P E F  ++G  +DGHD++  A  +
Sbjct: 2   LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDR 61

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  +V+     +        +    VDD L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L          G+ NN IG+P  L R+     + + E+GMS  GEI  L  + 
Sbjct: 122 KEMLAAILGQTGPGLKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFGEIDRLAEIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT   PAHL     +E +A AK E+F  L   G    N DD       +     
Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDPLIARCPSPD--- 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G++ + SFG   NAD      +         + +L  +S+ V     G H   N L    
Sbjct: 239 GVRRV-SFGL-HNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +T  + L  F P     +R+      G   LID+SYNANPASM AA++ L 
Sbjct: 297 AAHVLGVPTETIARGLGEFSPY---ARRFNLE-EVGDVILIDDSYNANPASMAAALTTLR 352

Query: 362 QISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALP 419
           +I     GRR +AVLGDM E+GE ++  H  L  +L+   +  ++ + G   +    AL 
Sbjct: 353 EIRA---GRRAVAVLGDMLELGEGAEEAHRQLG-LLAATCVDRLYVMGGMAGIVAAGALE 408

Query: 420 RSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +    V  + + D +   ++ +   GD ++VK S      R+   + E F A
Sbjct: 409 GGLADDAVTVATSHDAIVADLRRTTAAGDFILVKGSRGLAMDRVAEKMREVFVA 462


>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
 gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
          Length = 455

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 196/394 (49%), Gaps = 25/394 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A+ G  IG        G+SIDSRS+   + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALSGRQIG--ADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VADVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G E+I  AK EI EGL + G   LN DD  F +  A++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARA- 233

Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             G   + SF +S   ADF      R  + C      ++   G++++V  + +G H   N
Sbjct: 234 --GSHKVVSFARSNPKADFHATDIGRDARGCPS---FKLHGAGETVDVQLNVLGEHNVSN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        +   ++     L+   P +GR    + A N     +ID+SYNANP+SM A
Sbjct: 289 ALAAAAAAHAVGLSLNGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPSSMCA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AI +L+  S    GR + VLGD+ E+G+ ++  H
Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375


>gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 475

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 225/464 (48%), Gaps = 33/464 (7%)

Query: 23  PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V+G+S  DSR + P   FFA  G   DGH F+  A+  GA LVVV+ ++      +
Sbjct: 26  PRTVVDGLSTTDSREVVPGSIFFAKPGETTDGHLFVPQALDSGAALVVVDREL-----DV 80

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137
           + P   V+D + AL +LA  V AR+R+     I+ ITGS GKTTTK +L   L     T 
Sbjct: 81  AGPQLVVEDTVVALGELAADVIARVRALGNLRIVGITGSNGKTTTKNLLRAILEQSGPTI 140

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A   S+NN +G P+T+  +     + + E+  S +GEI  L  + RP I ++  +  AH 
Sbjct: 141 APRASFNNEVGAPVTMLEVSERTQYLVAEMSASGIGEIARLVGMARPDIGIVLKVGLAHA 200

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F GIE+  +AK E+   L ++    LN DD     +  K+ A     +  FG    A 
Sbjct: 201 GEFGGIEKTLAAKTEMVSDLLESDVAVLNLDDPRVASMADKTAA----HVLWFGLDDRAA 256

Query: 258 FQLRKWKQCSEQSWMEVQLQG------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +    +  S  +   ++L G       S  V  H +G H   N L        L   +D
Sbjct: 257 VRASDIRSTSRGTSFVLRLPGADGGDAASRPVRFHVLGEHHVMNALAAAAAAHTLGIGID 316

Query: 312 TAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             +  L        R +R+R  +    G  T+I+++YNA+P SM AA+  L+QI+  GE 
Sbjct: 317 RIVGGLEAVQ----RAERWRMEVLGGAGGVTVINDAYNASPDSMSAALKTLAQIAGPGE- 371

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV 424
           R IAVLG+M E+GE S   H  +  +     I  + + G      H+ A+ +       +
Sbjct: 372 RTIAVLGEMSELGEFSGEEHDRVGLLAVRLGIDQLVVVGPPARRMHITAINEGSWDGESL 431

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++ E+ D  +  ++ +L  GD V+VKSSNS G   L + L E F
Sbjct: 432 YF-ESQDAAYDHLKETLRAGDTVLVKSSNSAGLRFLGDRLGELF 474


>gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 457

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 238/472 (50%), Gaps = 29/472 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  ++L A +G  +       V+GIS DSR+I P + F  +KG  ++G  FI  A+  
Sbjct: 2   ILTVKEILDATEGKLLSGDINICVSGISTDSRTIKPGDLFIPLKGERFNGEKFIDDALNV 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+  +  +T+ +        P+  V+D   AL+++A   R +     IA+TGS GKTTTK
Sbjct: 62  GSASLTESTNCIRHDNK---PIIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS        IG++NN IG+PLTL  +  D D  + E+GMS  GEIR L ++  
Sbjct: 119 DMIYDVLSMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEIRRLKNIAS 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHAL 242
           P++AV T I  AH+      E I  AK+E+ E  +   T+ +N DD    ++L+ K    
Sbjct: 179 PNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEKK---- 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G K + ++G + N D +    +   E S  +V + G  ++V  +  G H   N L  + I
Sbjct: 235 GPKFV-TYGIN-NGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAICI 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 + +   KAL+ F P   R       ++     +I++ YNANP+SMKAA+SVL  
Sbjct: 293 GIQFDVNKEDIRKALAKFQPSAMR----LNIIDVAGIKIINDVYNANPSSMKAALSVL-- 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRS 421
              + E R++AVLG+M E+G+     H ++ E +   +I  +   G + L + D A+ + 
Sbjct: 347 -GGYTERRKVAVLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYALKIADGAIEKG 405

Query: 422 IH-------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++        + +E +D     I++ + + D+ +VK S       ++  L E
Sbjct: 406 MNNDNVFRCANNAEAID----VIKNIMKESDIFLVKGSRGMEMEEIVKFLQE 453


>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
          Length = 447

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 218/443 (49%), Gaps = 23/443 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VNG + D+R I P   +  + G   DGHD+I  A  KGA   + N      I   S  V 
Sbjct: 23  VNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAAATLTNR----PIEDDSHNVI 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D + AL  LA   R+ S A +I ITGS GKT+TK+M+   +S    T    G++NN+
Sbjct: 78  LVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMIASVISQQYTTLKTQGNFNNN 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R   + +  + E+GM+HL EI +LT +  P IA IT I  AH+      E I
Sbjct: 138 IGLPLTILRYNGE-EVMVIEMGMNHLEEIDYLTKIALPDIAAITNIGTAHIGELGSRENI 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EI  G+   GT+ +N D+     +    H  GI ++ + G   +AD +       
Sbjct: 197 LQAKMEIVHGMNH-GTLVVNNDNDLLSTV----HPEGI-SLKTIGIESDADLKATDIILN 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S   V++ G+   V  +  G H   N L+ + I  +L   ++  I+ +  F   + R
Sbjct: 251 EDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQIGLLLDIPMEKCIRGIETFELTKNR 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                         +ID +YNAN  SMK++I VLS  +     R+IAVLGDM E+G+  +
Sbjct: 311 NDILTL---DRHIRVIDGTYNANLDSMKSSIDVLSGYTD----RKIAVLGDMLELGDYEE 363

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVD 443
           + H  +   L   NI  +   G     + D + ++   I  H+ +    L  ++Q  L +
Sbjct: 364 TLHRAVGAHLLKKNIDLILTVGPAARYISDEVNKAKPGIAYHFDDNA-SLSAYLQECLEE 422

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
            DVV+VK+SN      +IN L E
Sbjct: 423 NDVVLVKASNGMHLKEVINDLKE 445


>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 461

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 216/444 (48%), Gaps = 25/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN     SI  + IP F
Sbjct: 36  ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----SIDGVHIPQF 91

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L AL K+A A R      IIA+TGS GKTT KEM+   L   + ++A  G+ NNH
Sbjct: 92  VVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNH 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I+ +
Sbjct: 150 IGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV 209

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           A +K EI +GL  TG   +N DD+   F++ L A       K I  F     AD   +  
Sbjct: 210 ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIAD------KKILRFSSLHPADIYAQDI 263

Query: 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +     ++   + L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 264 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 323

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      Q   T+ID++YNAN  S+  A+ VLS   P   GR+I V GDM E+G
Sbjct: 324 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RP---GRKIFVFGDMGELG 376

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A       H+  + + L   +++ L 
Sbjct: 377 EWTTQHHREVGVAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 434

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 435 PDTTVLVKGSRSSAMENVVHRLVQ 458


>gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 452

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S PV 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNTLV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + L   D V+VK S       ++N L+
Sbjct: 424 TNDLKAHDCVLVKGSRGMKLEEVVNALI 451


>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
 gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
          Length = 452

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 221/449 (49%), Gaps = 33/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPV 85
           +NG++IDSRSI+    F   KG + DGH F+  A+Q GAG          SI  ++S P+
Sbjct: 26  INGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKG--TSIDENVSGPI 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN
Sbjct: 84  IWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E 
Sbjct: 144 EIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQL 260
           IA AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L
Sbjct: 204 IAKAKSEITIGLKDNGTFIYDGDEPLLKPHVNEVENAKCISIGVAT----------DNAL 253

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                  + + +   +  K     H+    +G H  +N  + + +   L    +T  + L
Sbjct: 254 VCSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNL 309

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                    G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD
Sbjct: 310 KNVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGD 362

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLF 436
           + E+GE S+  HI +   L   +I  ++  G     + ++  + +    +  + D +   
Sbjct: 363 VLELGENSKEMHISVGNYLEEKHIDVLYTFGNEAKYIYESGQQHVEKAQHFNSKDDMIEV 422

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + S L   D V+VK S       ++N L+
Sbjct: 423 LTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 515

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 213/452 (47%), Gaps = 34/452 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR + P   + A  G H DGH FI  A++ GA L++   ++  + G    P   V 
Sbjct: 32  ICTDSREVQPGSVYVAKPGEHSDGHTFIEAAIEAGAILIIAEREIADAQGQ-PFPAIIVA 90

Query: 90  DVLGALNKLAVAA----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           D + A+  +A       R   + T++ ITGS GKTTTK++L   L  +  T A IGSYN 
Sbjct: 91  DAVQAMGDIAAEVVQLIRANGEVTVLGITGSAGKTTTKDLLAGILRQLGPTVAPIGSYNG 150

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +GVPLT+ +  +   F + E+G + +G I +L  LV+P I V+  I  AH   F G+E 
Sbjct: 151 EVGVPLTVFQADLTTRFLVIEMGATRIGHIEYLAGLVKPDIGVVLGIGSAHAGEFGGVEN 210

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-----KNADFQL 260
           IA AK E+ E L  TGT  LN  D     + +++    +  +  FG+      +     L
Sbjct: 211 IAQAKGELVEALSPTGTAVLNLGDGRVSAMASRT----VAPVLWFGEEGLRIPEGQTSVL 266

Query: 261 RKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
               Q    +     L+   G S  +    IG H   N+L          AD +T  + L
Sbjct: 267 AGNVQVGSNATPSFDLRFPDGSSWPIRSGLIGIHHVNNLLAAAAAAWAAGADGETIARGL 326

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG---------E 368
               PK  R +  R     G  T+I+++YNANP SM+AA+ VL+++   G         +
Sbjct: 327 DGQGPKS-RWRMERSERADG-VTVINDAYNANPDSMRAALRVLAELGRGGADENGKILPQ 384

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
            R  AVLG M ++G  S   H  L +V+   NIS + + G      H+ A+ +       
Sbjct: 385 RRTWAVLGPMFQLGAESIREHNALGQVVVRLNISRLLVIGAEARALHIGAINEGSWGEES 444

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           VH  + +D  +  +Q  L  GD+V+ KS +  
Sbjct: 445 VHVPD-LDSAYALLQEELKPGDIVLFKSGHDA 475


>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
          Length = 460

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 230/473 (48%), Gaps = 25/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++F+++ +A     +     G    +SIDSR+I   + F A+KG  +DGHDF+++A +KG
Sbjct: 4   FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++        S    VF V D   A   LA   R+R    ++A+TGS GKTTTK+
Sbjct: 64  ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+++ LSS     +   + NN IG+ LTL  +  + D  + E+GM   G+I  L ++ +P
Sbjct: 124 MISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIEELCNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSH 240
            I VIT +  +H+      E IA AK E+ + L + G   LN DDSF     E  K +  
Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKGRVI 243

Query: 241 ALGIKTIYS-FG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G+   Y+ +G K    +F  +    C ++++ +V L+          +G H   + L 
Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAF-KVNLK---------LLGIHNVYDALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 IL  DV    + LS F P+ GR    +  +      +ID++YNANP SM+ A+ 
Sbjct: 294 ATSTARILGVDVTKIQRVLSDFSPRAGR----QSLIEINGIKIIDDAYNANPLSMEMALR 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA 417
            L QIS      +  VL DM E+G+  + FH ++  +   +     + +        K A
Sbjct: 350 SLKQISAK---NKYLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGA 406

Query: 418 LPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             + + + YS +T       I +    GDV ++K S+S   Y + +LL EE  
Sbjct: 407 KEKGMKMIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459


>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 461

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 216/442 (48%), Gaps = 18/442 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR +A    F  + G   DGH FI+ A  +GA   + + +  +S+     P+ 
Sbjct: 26  INTIEFDSRQLASGSLFIPLGG-KTDGHQFIMDARSQGAKAALWSKE--SSLAPEGFPIL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A+  LA+    +    +IA+TGS GKTTTK+M+   L+    TY   G+YNN 
Sbjct: 83  EVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTKDMIAAVLAKKYITYKTQGNYNNQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP + +  + E+GM H  EI FL+ L  P +A IT I  AH+ N    +EI
Sbjct: 143 IGLPYTILHMPEETEMLVLEMGMDHADEIDFLSQLASPTVAAITMIGEAHIENLGSRQEI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK  I +GL + G + +  ++   + L A S     +TI +FG +  ADF   +  Q 
Sbjct: 203 AKAKMGITKGLVEDGLLIIPENEPLLKPLTANS----TQTIKTFGFTNEADF--VECVQL 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E++    +L G  +       G +   N  + L I            + L+  H  + R
Sbjct: 257 EEKNKTTFKLSGYQLPFTIPVPGKYNVDNACIALIIGKWFQVPEKEMQQTLAEVHLTKNR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N G   L D  YNANP ++   +    Q+  +  GRRI VLGDM E+G  S+
Sbjct: 317 TEWVTA--NNGVEILSD-VYNANPTAVSLVLDSFGQMFTN--GRRIVVLGDMLELGATSK 371

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDG--LFLFIQSSLV 442
             H  L++ L    I  V+L G  +  L   L ++   HVHY   M+   L ++++++L 
Sbjct: 372 MMHQQLSKHLFPAIIQEVFLYGTEMKNLFLILEKTYGNHVHYYPKMEKEHLIVYLKATLQ 431

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D+++VK SN      +I  L
Sbjct: 432 PNDLLLVKGSNGMRLTEVIEAL 453


>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
          Length = 438

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S PV 
Sbjct: 12  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPVI 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 71  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 130

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 131 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 190

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 191 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 240

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 241 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 296

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 297 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 349

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 350 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 409

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D ++VK S       ++N L+
Sbjct: 410 TSDLKAHDRILVKGSRGMKLEEVVNALI 437


>gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 460

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 205/392 (52%), Gaps = 28/392 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L QA++G  IG      ++ +S D+R+IA Q  F A+KG  +D HDF   A   GA
Sbjct: 5   SLASLAQAVEGQLIG--SDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATI--IAITGSVGKTT 121
             ++V+  +      + +P   V D   AL  L   + A+L  +  +  +A+TGS GKTT
Sbjct: 63  VALLVSRHL-----PVELPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM    L++  K  A  G++NN IG PLTL R+  +  + + ELG +HLGEI + T+L
Sbjct: 118 VKEMCAAILATKGKVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHLGEISYTTNL 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P +A+I  +A AHL  F  ++ +A AK EIFEGL K  T  +N   +  EL    +  
Sbjct: 178 VKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASNDRELW---APL 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMT 299
           L  K + +F   + ADF     +  S+  +   +L      V  H   +G H   N L  
Sbjct: 235 LADKNVITFSSEEQADFFASDIELDSD-GYPHFELHSPQGSVAIHLSQLGLHNVSNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL--IDESYNANPASMKAAI 357
             + S+L A +    + L      +G     R A++Q    L  ID++YNA+ AS+KAAI
Sbjct: 294 AALTSVLGATLAEIKQGLETATNVKG-----RVAVSQPMVGLRVIDDTYNASVASVKAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +L+      +G+R  +LGDM E+GE S++ H
Sbjct: 349 DLLASY----QGQRWFILGDMAELGEESENLH 376


>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
          Length = 452

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S PV 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D ++VK S       ++N L+
Sbjct: 424 TSDLKAHDRILVKGSRGMKLEEVVNALI 451


>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 452

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 216/445 (48%), Gaps = 25/445 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           + G++IDSR+I     F   KG + DGH F+  A++ GAG        D+  ++     P
Sbjct: 26  IKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDIDDNVKG---P 82

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA A        +I +TGS GKTTTK+M+   L +  K     G+YN
Sbjct: 83  IIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PLT+  + +D +  I E+GMS   EI  L+++  P IAVIT I  +H+ +    E
Sbjct: 143 NEIGLPLTILELDLDTEISILEMGMSGFHEIELLSNIAEPDIAVITNIGESHMQDLGSRE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+EI  GL+K GT   + D+   E      H   IK           D  L    
Sbjct: 203 GIAKAKSEITIGLKKEGTFIYDGDEPLLE-----PHVKKIKHAKCLSVGLKQDNALVCEV 257

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + SE   +   + G      H+    +G H  +N  + + I   L    +T    ++   
Sbjct: 258 EHSENDGIAFSINGNE----HYKLPILGIHNMKNAAIAIAIGHELGLKYETIQHNINHVQ 313

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +R+   +     T+I+++YNA+P SMKAAI  LSQ+    EGR+I VL D  E+
Sbjct: 314 LTGMRMERH---ITDDDITIINDAYNASPTSMKAAIDTLSQM----EGRKIIVLADSLEL 366

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSS 440
           GE S+S H ++   L   NI  +   G     + D   + + HV Y      L  ++ ++
Sbjct: 367 GENSRSMHEEVGAYLEGKNIHTLLTYGKDAKYISDIGGQFVDHVEYFIDKQQLTQYLINN 426

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           LV  D V+VK S       ++N L+
Sbjct: 427 LVANDKVLVKGSRGNKLEEVVNKLI 451


>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
 gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 230/469 (49%), Gaps = 29/469 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA  V
Sbjct: 7   EIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAV 66

Query: 69  VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    D V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GKTTTK+M+ 
Sbjct: 67  ITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 126

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L ++  P +A
Sbjct: 127 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQVA 186

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243
           V T I  AH+      E I  AK E+ E  ++   I LN DD     +     +K +  G
Sbjct: 187 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 246

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLG 301
           IK+    G+ K  D +        E+  ++  L+ K++  E+     G H   N L  + 
Sbjct: 247 IKS----GEIKACDIE-------KEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAIC 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      +V+   +AL  F P    GK     +  G   +ID+ YNANP SMKAA+SVL 
Sbjct: 296 VGLEFGINVEDMAEALKDFQP----GKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG    +     K  
Sbjct: 352 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVC 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  ++    T   +   ++  + +GD ++VK S      +++  L E
Sbjct: 409 GMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 457


>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Oceanobacillus iheyensis HTE831]
 gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
           [Oceanobacillus iheyensis HTE831]
          Length = 455

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 233/468 (49%), Gaps = 23/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T   L +    H   I     +  ++ D+R  +    +  I G  +DGH+FI  A++ 
Sbjct: 2   LFTVQWLAELFPKHQGKISTDITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKN 61

Query: 64  GAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA   + +  + + S    S PVF V+D + A+ +LA +       T++ +TGS GKTTT
Sbjct: 62  GAIATLWDKSIPLPSEWDNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  + +  KT A  G+ NNHIG+PLT+  M  D +  + E+GMS  GEI  L+ + 
Sbjct: 122 KDLITSVVKTSYKTTATQGNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   VIT I  +H+ N    + IA AK EI EG++  G +F++ D+    LL  ++  +
Sbjct: 182 EPDYTVITNIGESHIENLGSRKGIAKAKLEIIEGIKSNGNLFIDDDEP---LLAKENIDM 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I   G +K +D  +   K   +++  EV  +   + +    +G H A+N    + I
Sbjct: 239 DDSQIIGIGFTKESDINISNVKVHPDRTTFEVTDKPYHVNL----LGEHHAKNAAFAISI 294

Query: 303 ---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              ++I   ++  A   L V       G R+          +I+++YNA+  SMKA+I V
Sbjct: 295 GKALNISHENIQLAFNKLEV------TGMRFELETGINGVHIINDAYNASATSMKASIQV 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + ++   G   ++ VLGD+ E+G  S+ +H  +AEV+    IS ++  G     + D + 
Sbjct: 349 VKEM--EGFQNKVLVLGDILELGTYSEHYHRSIAEVID-SRISEIYTYGEQAFYIYDEIT 405

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    ++VHY +  + +   ++  L +  +++ K+S    F   I  L
Sbjct: 406 KQHPKVNVHYIKQREDVVPSLKEHLNNQTLILFKASRGMKFEMFIKEL 453


>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 452

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 461

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 230/469 (49%), Gaps = 29/469 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA  V
Sbjct: 8   EIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAV 67

Query: 69  VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    D V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GKTTTK+M+ 
Sbjct: 68  ITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L ++  P +A
Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243
           V T I  AH+      E I  AK E+ E  ++   I LN DD     +     +K +  G
Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLG 301
           IK+    G+ K  D +        E+  ++  L+ K++  E+     G H   N L  + 
Sbjct: 248 IKS----GEIKACDIE-------KEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAIC 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      +V+   +AL  F P    GK     +  G   +ID+ YNANP SMKAA+SVL 
Sbjct: 297 VGLEFGINVEDMAEALKDFQP----GKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG    +     K  
Sbjct: 353 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVC 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  ++    T   +   ++  + +GD ++VK S      +++  L E
Sbjct: 410 GMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458


>gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
 gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
          Length = 447

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 208/438 (47%), Gaps = 35/438 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           IS DSR I P   FFA++G  +DG+ F   A++KGA   VV+   + +     +  +  V
Sbjct: 42  ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKADRLIVV 101

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  L  LA   R      I+AITGS GKTTTKE+++  L+   + YA  G+ NNHIG
Sbjct: 102 DDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNNHIG 161

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  DV+FGI E+G S  GEI  L  +  P+  ++T I  AHL  F G E +  
Sbjct: 162 VPLTLLAMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNIGRAHLEGFGGPEGVRR 221

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ L +T G +F+  +D     + A+   L                      +C 
Sbjct: 222 GKGELYDWLARTGGRVFVPANDPVLMSMAAERETLA--------------------AECY 261

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +  +         V HH  G +   N+   + +      D +    A+  + P   R 
Sbjct: 262 PTTLAD--------GVEHHLEGDYNRFNVAAAVAVGRYFGVDDERIRYAVGSYRPDNHRS 313

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           ++ R   N    TLI + YNANP+SM+A++    Q    G  R+I +LGDM E+G+ S +
Sbjct: 314 QKIRTGQN----TLILDCYNANPSSMQASLVNFRQEPLEGCTRKILILGDMLELGDWSDA 369

Query: 388 FHIDLAEVLSLYNISHVWLSGFH-VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            H  +  + +    + + L G H   A +    R        + + L   ++   V   +
Sbjct: 370 EHRHIISLAAEIPDARILLVGPHFAKAYRSLESRPADTTLYPSQEVLAAELRKHPVSQAL 429

Query: 447 VVVKSSNSCGFYRLINLL 464
           ++VK S+S G  RL +LL
Sbjct: 430 ILVKGSHSIGLERLADLL 447


>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
 gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
          Length = 462

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 224/455 (49%), Gaps = 51/455 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVV---VNTDMVASIGSLSIPV 85
           I+ D+R++   E F A+KGP++DGH FI  A QKGA G++V   V+TD         I  
Sbjct: 27  INTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQKGAIGVIVDHAVDTD---------IAQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F V D   AL  +  A   +     IAITGSVGKTT KEM    LSS     A  G++NN
Sbjct: 78  FVVADTRIALGTIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSSKGDVLATKGNFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+     F + ELG +H+GEI + T + +P +AV+  +A AHL  F  ++ 
Sbjct: 138 DIGVPLTLLRLEPQHRFAVIELGANHIGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLQG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------- 258
           +A AK EI++GL++ G   +N D  F +    K   L  + I  F  S+  D        
Sbjct: 198 VAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLDK---LATRNIKCFSSSEKLDIWAEDISL 254

Query: 259 --QLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             Q R  +  C++Q  + V+L            G H   N L+   + S     ++    
Sbjct: 255 DAQARASFTLCTKQHSVPVKLALP---------GKHNISNALIAAALTSEFDVSLEDIAS 305

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+     +GR      + +    T+ID++YNAN  S+KAAI +LS I    +G RI  L
Sbjct: 306 ALATMGEVKGRVNLIEASDS---LTIIDDTYNANVKSVKAAIDLLSDI----QGHRILAL 358

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGL 433
           GDM E+GE ++ +H ++ E      I  ++  G       D   LP     H+S   + +
Sbjct: 359 GDMGELGEDARKYHQEVGEYALAQGIDELFTLGVLSKCASDVFGLPNR---HFS-NREQM 414

Query: 434 FLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLL 465
              IQ+S+   D    +VVK S S     L+  L+
Sbjct: 415 LQQIQNSISKVDKKITLVVKGSRSSRMELLVTDLV 449


>gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida BIRD-1]
          Length = 455

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 195/394 (49%), Gaps = 25/394 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VAGVDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARA- 233

Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             G   + SF +    ADF      R  + C       +   G+++ V  + +G H   N
Sbjct: 234 --GAHKVVSFARGNPKADFHASDIGRDARGCPS---FTLHGAGETVAVQLNVLGEHNVSN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        +   +      L+   P +GR    + A N     +ID+SYNANP SM A
Sbjct: 289 ALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPTSMCA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AI +L+  S    GR + VLGD+ E+G+ ++  H
Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375


>gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 447

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 217/438 (49%), Gaps = 24/438 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GIS D+R I P   FFA+KG +++G+ F   A++ GA   V++ +       L      
Sbjct: 32  DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEY----HLKDKTIL 87

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+DVL  L  LA A R      ++A+TGS GKTTTKE++   LS   KT A  G+ NNHI
Sbjct: 88  VEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGNLNNHI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  + + GI E+G +H+GEI  LT +  P    IT    AHL  F  ++ + 
Sbjct: 148 GVPLTLLSMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYITNFGKAHLEGFGSVQGVI 207

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+++ L    GT+FLN DD        ++  LG    + F   +  D  +      
Sbjct: 208 KGKSELYDYLIAHKGTLFLNLDDPI------QAEKLGSTHTFCFSAHQETDLNIVYH--- 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + Q +   Q     + V  + +G +   N+     I +      +   +AL  + PK  R
Sbjct: 259 TAQPFANFQFD--EITVNSNLMGQYNTINLAAAAAIGTFFKISAEDIKEALEAYVPKNNR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     +N G  T+I ++YNANP SM+AA+   + +    +G +IA LGDM E+GE S 
Sbjct: 317 SQ----IINNGDQTIILDAYNANPTSMEAALRNFAGLER--QGPKIAFLGDMFELGETSA 370

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A + +  +I H+ L G H         +   V+  +  + L + +Q +L D   
Sbjct: 371 YEHQFIANLAAQLDIDHLILLGSHFEKTNTTAFKFTDVNQLKEQN-LPVSLQKALADA-T 428

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S       L++L+
Sbjct: 429 ILIKGSRGMKLETLLDLV 446


>gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS]
 gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS]
          Length = 851

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 195/382 (51%), Gaps = 10/382 (2%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P   V  V  AL  LA+A R      I+A+TGS GKT+T  M+   L           +
Sbjct: 56  VPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKRPTKN 115

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +N   GV   +A +  +    + E+  S L   G  R   +++RP +A+IT+I  AHL  
Sbjct: 116 FNTFDGVNGEVANL-TNEAIAVIEVAASFLSQRGGPR--PNVLRPEVAMITSIGEAHLEY 172

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   + +A  K+ +F+ L   GT  +  D   ++ +  ++ A G  T+ SFG   +AD  
Sbjct: 173 FGSPQGVAEVKSNVFD-LMSRGTAVIPRDADTYDYMVQRARAAGATTV-SFGAHPSADAH 230

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           L  +   +    +E ++ G+ +      +G H A+N +  LG+V+ L  D   A  AL+ 
Sbjct: 231 LLSY--SAADGVVEAEIFGERITYELGALGRHFARNSVGALGVVAALGLDWRRAAGALAS 288

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GRG  +      G FTLID++YNANP+S++AAI +LS+ +    GRRIAVL DM 
Sbjct: 289 SREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERATPPRGRRIAVLADML 348

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G  S+ FH  LAE L    I  V+L G  + AL D LP  I   Y  T+DGL   +  
Sbjct: 349 ELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEIRGQYYPTVDGLQAALDR 408

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
              DGDVV+ K SN    ++++
Sbjct: 409 EFADGDVVLFKGSNGTELHKVV 430


>gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O11]
          Length = 452

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WIEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
 gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 226/474 (47%), Gaps = 35/474 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++++A +G+         V  I IDSR      AF AI G + D H +I  A   G 
Sbjct: 5   TVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +VN      I S  + +  VDD   AL  +    + +     I ITGSVGKTTT++M
Sbjct: 65  RVFIVNKGKDIDIKS-DMNIIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  ALSS + T     ++NNH GVPLTL  +    +  + E+GMS  GEI +L ++V P 
Sbjct: 124 VYAALSSERATLKNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGEIEYLANMVNPK 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVI+ I  +H+ N    E I  AK EI  G  K  T+ +N DD F   L+       + 
Sbjct: 184 VAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLSTLRDAERDYDLI 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T   FG  KN D     +    +    E  + G   ++    +G H   N +  + + ++
Sbjct: 244 T---FGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAAIAVGTV 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   + LS F   E  G R +     G +T+I+++YNA+P SM+A++S+L +   
Sbjct: 301 EGISMEGIKRGLSNF---EATGMR-QDIRKIGEYTVINDTYNASPDSMEASLSILGRY-- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWL------SGFHVL 412
             EGRRIAVLGDM EMG+L++  H       +D ++V+     S V++      +GF V 
Sbjct: 355 --EGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNSDVIITVGESAVFINKEAEENGFDV- 411

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   S H    E    L   I  S   GD ++ K+S    F + +  + E
Sbjct: 412 ------KNSYHFDNLEDAKKLLGEIMQS---GDTMLFKASRGMKFEKFVEYVKE 456


>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
 gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 235/472 (49%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++++   G  +G      + G+S DSR+I   E F  + GP++DGHDFI  A +KGA
Sbjct: 5   TIKEVIKYTSGEYLGNQFNIQITGVSTDSRTINKGELFVPLTGPNFDGHDFIERAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             ++ + +  + + +L I  +  VD+   AL  L+   R       +AITGSVGKTTTKE
Sbjct: 65  AAILCDKNKRSKVDNLPIKNIIFVDNPQSALLSLSAYYRRLFDIPFVAITGSVGKTTTKE 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+   K     G+ NN IG+PLT+ R+      G+ ELGMS LGEI  +  +VRP
Sbjct: 125 MTAEILNMRFKVLKTSGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMASVVRP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  AH+      + IA AK EI E L +     LN D    EL  A+   +  
Sbjct: 185 KIAVITNIGIAHIEKLGSKQNIARAKMEILEPLGENDLAVLNGDCQ--ELWDARKTIVP- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLGI 302
           KT++ FG+ +  D + R  K  S  + +E  + G   E+    +  G H   N L  + +
Sbjct: 242 KTVF-FGQER-GDIKARNIKSNS-TNELEFDIYGCYGEMTFKALLPGIHNVNNALAAIAV 298

Query: 303 ---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAI 357
              + +   ++      L +           R    + +F   +ID++YNANP SMK+A+
Sbjct: 299 GFEMGLTKEEIQQGFLNLKL--------PEMRLQFKKSYFGADIIDDAYNANPDSMKSAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSLYNISHVWLSGFHVLA 413
             L Q S +G+ +R  +LGDM E+G+LS+  H ++    AE   ++     +   F   A
Sbjct: 351 DFLQQYS-YGK-KRAVILGDMLELGDLSEKAHFEIGKYAAERADIFIAVGNYAQSFKKGA 408

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L+  L  S ++H   T+      I+  + D D++++K+S      ++   L+
Sbjct: 409 LQGHLD-SRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRGMKMEQITQTLV 459


>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 448

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 228/470 (48%), Gaps = 31/470 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   ++ +A+ G          V+  S++S++++    F  +KG  +DGHDF+  A+Q 
Sbjct: 3   LW-LSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEALQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           GA   +   +      ++ +P   V D L AL  LA   R + K  T+I +TGSVGKT+T
Sbjct: 62  GAISFISQKEF----KNVRVPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   L+   KT+   G++NNHIG+P ++  MP D    +FE+GMS+ GEI  L+ + 
Sbjct: 118 KEYIFNVLNYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKLSQIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT I  AH+ N      I  AK+EI +G+   G + +N D+    L K +    
Sbjct: 178 KPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMADDGMLIINNDNDILNLHKGELK-- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K I + G    + F+ +  ++       EV      +E       +H   N L  + +
Sbjct: 236 --KRIITIGIENESHFRAKNVQRHQNGFSFEVDNYTYFIE----SFNFHDIYNSLFAIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             IL  D     +A+     ++ R KR    + +G  T+ID++YNA+  SM +AI  + +
Sbjct: 290 GIILGIDRQLIKEAIR----RKERLKRRFEIIQKGSITVIDDTYNASTHSMLSAIDSICE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDA 417
                +G++I VLGDM E+GE S+  H  +   +    I  V  +G   F++   A K  
Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAKKKE 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             R+  V   E +D L    +  +     ++ K+S       +++  L+E
Sbjct: 402 GSRAYFVSKDECLDVL----EREVTSNSTILFKASRGIKLDEIVDEFLKE 447


>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
 gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
          Length = 450

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 224/440 (50%), Gaps = 28/440 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR+I   + F A+KG ++DG+ F   A++ GA  V+V+   V +      P   V D  
Sbjct: 28  DSRNIVAGQLFVALKGANFDGNAFAQEALELGAAAVLVSDASVQAE-----PRIVVADTR 82

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNNHIG 148
            AL +LA   R +    ++A+TGS GKTTTKEML+  LS +    A +    G+ NN IG
Sbjct: 83  LALGELAKYWRQKFAMPVVAVTGSNGKTTTKEMLSAILSVVAGAKASVHATYGNLNNDIG 142

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL +M     + + E+GM+HLGEI +LTH+ +P +A+I     AH+      E IA 
Sbjct: 143 VPLTLLKMQPAHQYAVVEMGMNHLGEIDYLTHIAQPDVALINNAGIAHIGELGSRENIAK 202

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           AK EIF GL+  G   +N D  +    K+   H    + I +FG    AD   R  +   
Sbjct: 203 AKGEIFAGLKSDGVAVINADSDYAYYWKSLNPH----RKIVTFGLKNPADVSARYQEN-- 256

Query: 268 EQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  V L   S EV V   + G H   N L        L   ++   + L+ F    G
Sbjct: 257 -DGYASVVLATASDEVSVQLNVQGEHNISNALAAGATAYALGVSLNDIGRGLASFTGVYG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R +  +N     +ID++YNANP SMKAAI+VL++++    G++I VLGDM E+G  +
Sbjct: 316 RLER-KAGINGA--VVIDDTYNANPDSMKAAINVLAKLA----GKKILVLGDMGELGADA 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +S H ++        ++ ++  G   L+++ A        +  + + +   +  +L  G 
Sbjct: 369 KSMHAEVGAYAKAAGLTTLYCLGN--LSVETARSFGAGAEHFSSPEAIAQAVLPALAQGT 426

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            V+VK S      R++NLL+
Sbjct: 427 TVLVKGSRFMQMERVVNLLV 446


>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 484

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 151/485 (31%), Positives = 231/485 (47%), Gaps = 44/485 (9%)

Query: 6   TFHDLLQAIQGHSI---GIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  ++ +A+ G  +       Q  V+G+   DSR I P   F A  G   DGH F   AV
Sbjct: 20  TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLFAPWAV 79

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSV 117
           + GA L++V  ++      L +P   V DV+ AL +LA  V AR+R+  +  ++A+TGS 
Sbjct: 80  EAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGELRMVAVTGSN 134

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK +L   L +  +T + + S+NN +G PLT+ ++     F + E+G S LGEI  
Sbjct: 135 GKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVTRSTRFLVAEMGASGLGEITR 194

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P + ++ T+  AH   F GIE     K E+ + L    T  LN DD     +  
Sbjct: 195 LIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRVASMSD 254

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNM 296
           K+ A     +  FG+   A  +       +  +   + L  G +  V    +G H   N 
Sbjct: 255 KTQA----PVLWFGRDARAAVRATDIVASAAGTTFTLHLPDGSTRPVSFRVLGEHHVTNA 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKA 355
           L        L  D D  + AL        R +R+R   L     T+I+++YNA+P SM A
Sbjct: 311 LAAAAGAWALGVDGDAIVSALQTVQ----RAERWRMEVLGGNGVTVINDAYNASPDSMAA 366

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  L+QI    E R +AVLG+M E+GE S+  H  +  +    NI  + + G       
Sbjct: 367 ALRTLAQIRGP-EQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPA---- 421

Query: 416 DALPRSIHVHY--SETMDGLFLFIQSS----------LVDGDVVVVKSSNSCGFYRLINL 463
               R +H+      + DG  +F + +          L DGD+V+VKSSNS G   L + 
Sbjct: 422 ----RRLHLEAIGQGSWDGESIFAEDAAEAREILDGILRDGDLVLVKSSNSAGLRFLGDE 477

Query: 464 LLEEF 468
           L E++
Sbjct: 478 LGEKY 482


>gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 470

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 235/464 (50%), Gaps = 44/464 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V  I+ D+R+I+  E F AI G   DG+ F   A+  GA + V+  D  A+  + + P 
Sbjct: 25  LVTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAGA-VAVLTADPAAACATGAAPE 83

Query: 85  -VFGVDDVLGALNKLA-VAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            V  VDD + AL +LA   A +  K       +I +TGSVGKTTTK++L   L       
Sbjct: 84  RVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSVGKTTTKDLLAHLLGQRGPII 143

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  GS+NN +G+PLT+ R        + E+G  H+G + +LT +V P ++V+  +A AHL
Sbjct: 144 APPGSFNNELGMPLTVLRADESTSTLVLEMGADHIGNLAYLTGIVAPDVSVVLAVARAHL 203

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY--SFGKSKN 255
             F GIE +A AK+E+ EG  + G + LNYDD   E ++  +     K +Y  + G  ++
Sbjct: 204 GEFGGIENVARAKSELVEGTREGGVVVLNYDD---ERVRDMAKLAPGKVVYFSASGACRD 260

Query: 256 ----ADFQLRKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +D  L K  Q S        +S +E++L G      HH      A  + +  GI  
Sbjct: 261 GVWASDVTLNKTGQASFILHYGQSESRVELKLIG-----AHHVANALAAATVALVCGI-- 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQI 363
               ++D   + L+    +   G  +R  +  +   T+ID+SYNANP SMKA ++ L+ +
Sbjct: 314 ----ELDDCARLLT----EANAGSPHRMDVWERNGTTIIDDSYNANPDSMKAGLTALAHL 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSI 422
             H   R+IAVLG M E+GE S++ H  + E+++   I  +   G  +   +  A    +
Sbjct: 366 GTH--RRKIAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGPGLSPTILTARQGGV 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VH +  +      +   L +GDVV++K SN  G +RL + L E
Sbjct: 424 EVHETLNVAEATQLLTGLLAEGDVVLLKGSNGSGVWRLADALKE 467


>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
 gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
          Length = 460

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 35/456 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R+I     +  IKG  ++GH F+  A++ GA   + N D         I V 
Sbjct: 27  IEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENGALATLWNKD--EENPPTDISVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA + R      ++ ITGS GKTT K+M+   L +  +     G++NNH
Sbjct: 85  LVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLDTTYRVLKTDGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R+    D  + E+GMS  GEI FL++L  P +A+IT I  +HL +    + I
Sbjct: 145 IGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  TG +  N D+    LL ++      +T+ +FG S+  D         
Sbjct: 205 AEAKLEITSGLAPTGQLVYNGDEP---LLTSRVVNPVFETV-TFGSSEQNDLY------- 253

Query: 267 SEQSWMEVQLQGKSMEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              S +  +  G +  V            +G H   N L  + +      D +T  K L 
Sbjct: 254 --PSAISAEELGTTFTVSRETTYPFFIPVLGKHNVHNALSAIAVGHYFGLDNETIAKGL- 310

Query: 319 VFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
               KE +    R  L       T I+++YNA+P S+KAAI+++  +   G  ++I VLG
Sbjct: 311 ----KELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL--EGYKQKILVLG 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGL 433
           DM E+G+  + FH ++ E +    I +V   G   + ++     +     V + E  D L
Sbjct: 365 DMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAEDKVMHFEEKDEL 424

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              + +     DVV+VK+S       +I+ ++ + P
Sbjct: 425 VKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460


>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
 gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
          Length = 455

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 191/394 (48%), Gaps = 25/394 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + P+ +   L+  + G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPM-SLSQLVPLLNGQQIG--ADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VADVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAAEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP + VI     AH+  F G E+I  AK EI EGL + G   LN DD  F   KA++ 
Sbjct: 175 LTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFATWKARA- 233

Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             G   + SF +S   ADF      R  + C      ++   G+  +V  + +G H   N
Sbjct: 234 --GAHKVISFARSDARADFHASAIGRDARGCPS---FQLHGAGEVAQVQLNVLGEHNVSN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        +   +      L+   P +G   R    +      +ID+SYNANP SM A
Sbjct: 289 ALAAAAAAHAVGLSLAGIAAGLAAVQPVKG---RTVAQIAPSGVRVIDDSYNANPTSMCA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AI +L+  S    GR + VLGD+ E+G+ ++  H
Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375


>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
 gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
          Length = 467

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 221/475 (46%), Gaps = 57/475 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T +++ +A  G  IG    G  + +S DSR +AP E F A++G  +DGHDFI+ AV +
Sbjct: 1   MFTLNEIAEATGGRMIG-EGAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQ 59

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           G  + +         ++    G++ +P     D L AL  LA   R R     + +TGS 
Sbjct: 60  GITVFLAEESWAERHELPKGAGAVLVP-----DTLRALGDLAAYHRRRFNLKTVCVTGSN 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML   L+         G+ NN IG+PLT+ R+     + +FE+GMS  GEI  
Sbjct: 115 GKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDR 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--- 234
           L  +  P + +IT   PAHL     +E +A AK E+F  L+       N DD        
Sbjct: 175 LAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSACPT 234

Query: 235 -LKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            L       G++       +I S GK +   F LR              L     +V   
Sbjct: 235 HLNVTRLTFGLRGAEVSSASIQSLGK-RGESFTLR--------------LPDGEQQVTLS 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L        L    +   + L  F P +   KR++     G  TLID+SY
Sbjct: 280 AYGRHNIYNALAAAAAAHALGVSGEVIRQGLEEFSPYD---KRFQLEEVAG-VTLIDDSY 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANPASM AA++ L ++   GEGR +AVLGDM E+G  ++  H +L + L+  ++  + L
Sbjct: 336 NANPASMAAALTTLKEL--QGEGRLVAVLGDMLELGLGTEEAHRELGK-LAAGSVDRLCL 392

Query: 407 SGFHV-----LALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            G  +      AL+  LP +  V    + +    L  F+Q     GD ++ K S 
Sbjct: 393 LGKLIDETAKGALEAGLPETDLVLGRDHEQLAQELLTFVQP----GDCILFKGSR 443


>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 232/469 (49%), Gaps = 29/469 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GL 67
           ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA  +
Sbjct: 8   EIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAV 67

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    + V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GKTTTK+M+ 
Sbjct: 68  ITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L ++  P +A
Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLKNIAEPQVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243
           V T I  AH+      E I  AK E+ E  ++   I LN DD     +     +K +  G
Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLG 301
           IK+    G+ K  D +         +  ++  L+ K++E  +   I G H   N L  + 
Sbjct: 248 IKS----GEIKACDIE-------KGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAIC 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      +V+   +AL  F P    GKR    +  G   +ID+ YNANP SMKAA+SVL 
Sbjct: 297 VGLEFGINVEDMAEALKDFQP----GKRRLNIIEIGDIKIIDDVYNANPDSMKAALSVLR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG    +     K  
Sbjct: 353 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVC 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  ++    T + +   ++  + +GD ++VK S      +++  L E
Sbjct: 410 GMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458


>gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
 gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
          Length = 496

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 226/463 (48%), Gaps = 41/463 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           IVP   V     DSR       + A  G H DGHDF+  A ++GA LV+   ++  + G 
Sbjct: 23  IVPTSVVT----DSRESTHGSLYVAKPGEHADGHDFVDAAFERGAVLVLGEREVTDADGR 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALS 131
              P   V+D + A+  LA  +  R +A         T+I ITGS GKTTTK++L   LS
Sbjct: 79  -PFPAVVVEDAVLAMGALAAESVRRIRAERASRGEDFTVIGITGSAGKTTTKDLLAGVLS 137

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +   T A  GSYN  +GVPLT+        F + E+G + LG I++L  +V+P I V+  
Sbjct: 138 TAGATVAPQGSYNGEVGVPLTVFAADATTRFLVIEMGATGLGHIKYLAEMVKPDIGVVLV 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA--LGIKTIYS 249
           +  AH   F G+E IA  K E+ E L + GT  +N DD     ++A++ A  LG    ++
Sbjct: 198 VGTAHAGEFGGVENIAKTKGELVEALSEHGTAVINLDDGRVAAMRARTKAKVLG----FT 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNML---MTLGI 302
              +   + + R     + Q + +  L     G ++EV    IG H   N+L        
Sbjct: 254 SSPATTEEVEARNV-VVNGQGFPDFDLVLPDGGPAVEVRSRLIGGHHVTNLLAAAAAAFA 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I  AD+ T++ + S       R +  R     G  T+I+++YNANP SM+AA+  L+ 
Sbjct: 313 AGIPAADIATSLSSQSAAS----RWRMERTERADG-VTIINDAYNANPESMRAALRSLAD 367

Query: 363 ISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +   G+GRR  AVLG M E+GE S   H  +   +   NIS + + G    AL  +  + 
Sbjct: 368 L---GQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREARALYISAIQE 424

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                   ++ET++  +  +Q  L  GD+V+ KSSN  G   L
Sbjct: 425 GSWGDECSFTETVEEAYELLQRELEPGDLVLFKSSNGVGLRHL 467


>gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 452

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + L   D V+VK S       ++N L+
Sbjct: 424 TNDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
 gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
          Length = 459

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 224/455 (49%), Gaps = 38/455 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S DSR++  +  F A+KG ++DGH+F   AV  GA  ++V  ++   I +  I V 
Sbjct: 24  IDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGANALLVEREL--PIDAAQIVVA 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                +G   ++    R +   T +A+TGS GKT+ KEM+   LS   +     G++NN 
Sbjct: 82  NSQRAMG---EIGAYVREQLAPTCVALTGSNGKTSVKEMIATILSQQHRVLYTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +FG+FELG +H GEI + + LV+P +A++  +A AHL  F  +E +
Sbjct: 139 IGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGLVKPSVAMVNNVASAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSH----ALGIKTIYS-----FGKSKNA 256
           A AK+EIF  +   GT  +N DD+F + +L+A SH      G+K   S     F     A
Sbjct: 199 AKAKSEIFNHVTVGGTAVINADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIA 258

Query: 257 DFQLR-KWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           D   R  +  C  +E   +E+ L G+           H   N L    I   L   +   
Sbjct: 259 DSYGRYAFSLCYGAEVHRVELPLAGR-----------HQVSNALAATSICLALGLSLAHI 307

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + LS   P +GR       L  G  T+ID+SYNANPAS+ AAI  L +I    +G R  
Sbjct: 308 CQGLSQLKPVKGR--MLPSVL--GRVTVIDDSYNANPASVGAAIDWLQEI----KGNRCL 359

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           VLGD+ E+G+ +   H +L  +     ++ ++  G        A     +    + + GL
Sbjct: 360 VLGDLGELGDNAALLHRELGALAKAKGVNSLFCVGTLSEGASHAFGSKHYQDIDDLVAGL 419

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +I + L     V+VK S S    R++  L   F
Sbjct: 420 IQYI-NELPAEITVLVKGSRSARMERVVEALTTAF 453


>gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
 gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
          Length = 455

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 232/453 (51%), Gaps = 32/453 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P    +G+SI+SR+IA  + F A+ G   DGH+F+     + +GLVV + D       L 
Sbjct: 21  PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLADVTDRASGLVVSSADT-----DLP 75

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P + V+D   AL +LA   R     T+IA+TGS GKT+ K++++  L      +A  G+
Sbjct: 76  LPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAILGGFGTVHATKGN 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NNHIGVPLTL  M  D DF + E+G S   EI +L  + +P I++I  +  AHL  F  
Sbjct: 136 LNNHIGVPLTLLDMQQDSDFAVIEMGASAGSEISYLCSIAKPQISLINNVQSAHLEGFGS 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKN------ 255
           +E IA+AK EI+ GL+  GT  LN D  +    +A+  AL G +   +F    +      
Sbjct: 196 VEGIAAAKGEIYSGLDTDGTAILNLDQPW----QAEWMALIGDRECITFSVDDDCADISA 251

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314
           +D +L +   C     +   +  +S +VV+  I G H   N L          A ++  +
Sbjct: 252 SDIELMESGCCRFTLHLFTDMSLES-QVVNLAIPGRHSVSNALAAAACAVAAGASIEQIV 310

Query: 315 KALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             L      +   +R +   L QG   +ID+SYNA+P S++AAI VL+   P   GRR+ 
Sbjct: 311 SGL---EAAQSPARRLQAKDLAQG-GQIIDDSYNASPESVRAAIDVLAS-RP---GRRVM 362

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG- 432
           VLGDM E+G  ++  H ++ +  S   I  ++  G ++ A   A+ +  H    E++   
Sbjct: 363 VLGDMAELGADAEQLHSEVGDYASSAGIDQLYTLG-NLSAAASAVFKGHHFTDLESLKAP 421

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           LF  I+ S +    ++VK S S     ++++L+
Sbjct: 422 LFNEIEHSDL---TLLVKGSRSSKMDLVVDMLV 451


>gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans
            PD1222]
 gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222]
          Length = 1020

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 222/443 (50%), Gaps = 26/443 (5%)

Query: 32   IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVD 89
            ID R     E      G H+D HD  L A+Q    A +V    + +A       P+  V 
Sbjct: 584  IDRRMAMKHELSDFTAGKHWDIHDQ-LPALQGRIAAAMVARPVEGLAP----GFPLLQVP 638

Query: 90   DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-SYNNHIG 148
            D L AL +L VA R R K  ++A+TGS GKT+   ML  A++  +K       +YN+ +G
Sbjct: 639  DPLHALIQLGVAGRNRLKGHVVAVTGSAGKTSQSLMLMAAMAKDRKVIGNSALNYNSRVG 698

Query: 149  VPLTLARMPVDVDFGIFELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNF-SGIEEI 206
            +   LA  P   D  + E  ++ +   +F    L+RP I ++T IAP+H+     G+E +
Sbjct: 699  ILHLLANTPPSTDLVVVEAAVTAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSGQGLETV 758

Query: 207  ASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            A  KA + EG+   GT+ LN +  F+++   +AK   L    + +FG  ++AD +L  + 
Sbjct: 759  ARRKANLVEGIAPGGTLLLNREIDFYDVFLDRAKQRDL---CVVTFGAGEDADLRLVGYD 815

Query: 265  QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q + +  ++ +L G  + +      G HMA N L  +G+  +L  D+   ++ L  F P 
Sbjct: 816  QATGR--VKARLPGGGLLDYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPA 873

Query: 324  EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            EGRG   R        T++D+SYNANP SM+AA+S  + +     GRRI +LGDM E+G+
Sbjct: 874  EGRGAVSRVEFEGCPLTVVDDSYNANPVSMQAALSTFAGMK--VAGRRILILGDMAELGK 931

Query: 384  LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQ 438
             +  +H  LA  +       V L G  +  L D L +S        HY   ++ L   + 
Sbjct: 932  DASRYHRGLAAQILKIRPDEVLLCGPLMQELWDELSKSGAGRVDGAHYPR-VEVLLSNLA 990

Query: 439  SSLVDGDVVVVKSSNSCGFYRLI 461
              L  GD V++K+SNS G  R++
Sbjct: 991  GHLRSGDTVLLKASNSVGLGRIM 1013


>gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2,
           6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax
           paradoxus EPS]
 gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus EPS]
          Length = 479

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 207/430 (48%), Gaps = 26/430 (6%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL  T     Q I G  +   P   +  +  D+R++A  + F A+KG  +D +DF+  
Sbjct: 4   MTPLNMTLAQAQQWIPGSRLVGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQ 63

Query: 60  AVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +KGA   + +  +  A +  L +P     D L AL  L    R + +  +IA+TGS G
Sbjct: 64  AKEKGAIAAIAHHGLEAAGLAGLEVP-----DSLVALGALGAGWRAQFELPLIAVTGSNG 118

Query: 119 KTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTT  +M+   L + +  +  A  G++NN IGVPLTL R+       + ELGM+H GEI 
Sbjct: 119 KTTVTQMIAAILVAFRADRALATAGNFNNEIGVPLTLLRLRARHQHAVLELGMNHPGEIA 178

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+ + RP IA++      H    + +E +A   A +F  L   GT    Y D+F  L  
Sbjct: 179 RLSAISRPTIALVNNAQREHQEFMATVEAVAIENAAVFAVLPDDGTAVFPYGDTFTSLWT 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMA 293
             +H  G +   +FG+ + AD  L   +WKQ    +W + V+    + +   H  G H A
Sbjct: 239 DMAHDGGSRRCMTFGEDEGADISLESAEWKQG---AWAVRVRTPLGNFDASLHIAGRHNA 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPAS 352
            N L            +D   + LS F P +GR K     L N+   TL+D+SYNANP S
Sbjct: 296 GNALAATACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDS 355

Query: 353 MKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
           + AAI VL+ +  PH     + VLGDM E+G  +  FH ++        I  V+  G   
Sbjct: 356 VIAAIDVLAGLPGPH-----LLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYTLGTET 410

Query: 411 ---VLALKDA 417
              + A +DA
Sbjct: 411 AHTIAAFQDA 420


>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 205/399 (51%), Gaps = 15/399 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +++ A  G  +       ++GIS DSR+I   E F  +KG +++G  F+  A++ 
Sbjct: 2   ILSVKEIIDATSGKLLSGDINSTISGISTDSRTIKEGELFIPLKGENFNGEMFVEDALKI 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+  +   T+ V ++G  + PV  VD+   AL+K+A   R + +   IA+TGS GKTTTK
Sbjct: 62  GSASL---TESVNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS         G++NN IG+PLT+ R+    D  I E+GMS  GEIR L ++  
Sbjct: 119 DMIYDVLSMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIRRLKNIAD 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++AV T I  AH+      E I  AK+E+ E  ++  T+ LN DD     L  K     
Sbjct: 179 PNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLTNKKGPQY 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I      G  K  D + ++     E    +V + G  M+V  +  G H   N L  + I 
Sbjct: 239 ITYGIDNGDVKAFDIEYKE-----ESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAICIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +   KAL+ F P   R       L+     +I+++YNANP SMKAA+SVL + 
Sbjct: 294 IKFGVNKEDMRKALAEFQPSAMR----LNILDVSGIKVINDAYNANPGSMKAALSVLKE- 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + + R++AVLG+M E+GE S   H ++ + +   NI 
Sbjct: 349 --YKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENID 385


>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. 18P13]
          Length = 454

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 224/469 (47%), Gaps = 24/469 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+ G ++   P   V  IS D+R+I P   F A++G  +DGH F   A ++GA
Sbjct: 5   TLTEIAQAV-GGTLSNCPDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V V +D V        P   VD    AL   A   R + +   + +TGSVGKTTTK M
Sbjct: 64  --VAVISDHVIP----DCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + + LS+  KT    G+ NN IG+P TL  +       + E+GMS  GEI  L+    P 
Sbjct: 118 IALVLSTHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H++     E I  AK EI +G+     + +N DD +   LK        +
Sbjct: 178 IGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPLKTTLS----R 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +Y++G  KNA    R  +  SE       L  QG    V    IG H   N      I 
Sbjct: 234 PVYTYG-IKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNGAAAFCIG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +   + +    AL  + P +G  +  +   ++   T+I + YNA+P SM+A++SVL Q+
Sbjct: 293 MLAGMEPEEIAGALRTYQP-DGMRQNIQQIDDK---TVILDCYNASPDSMRASLSVLGQL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSI 422
           S    GRRI VLGDM E+GE S+  H  +  +++   +  ++  G     + ++A  + +
Sbjct: 349 SV--TGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRYIAEEAAKQGV 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            V +    + L   ++ SL  GD V+ K+S       +   L   FPA+
Sbjct: 407 PVQHFTEKEALTEQLRRSLQPGDAVLFKASRGMQLESVAKAL---FPAL 452


>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 452

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   +G + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CCVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIGVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
 gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 228/485 (47%), Gaps = 60/485 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            + ++LL+A+ G  I      F N + ID+R I     +FAI G  ++G+ F++ A  KG
Sbjct: 3   LSLNELLEAMNGELIVKGKTDF-NSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKG 61

Query: 65  AGLVVV--------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           A + +V        NTD + +       V  V+D   AL  LA   R +    +I +TGS
Sbjct: 62  ASIAIVDEILFDLNNTDNLQT-------VIKVEDTEKALLNLANYYRKKLGLKVIGVTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+++   LS   K +   G++NN IG+PL +  +   +D  + E+GMS+LGEI 
Sbjct: 115 CGKTSTKDLIAAFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGEID 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L +  RP IAVIT I  +H+ N    E I  AK+EIF   ++T T+ +N +D    LLK
Sbjct: 175 VLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDE--NLLK 232

Query: 237 AKSHALGIKTI--------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            K     I  I        Y+F      D      K  +E+S   + + GK         
Sbjct: 233 IKDKCFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGK--------- 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             H   N ++ + +   L    D   K +        R +     + +   T+I++ YNA
Sbjct: 284 --HNILNSMLAVEVAKKLNVTFDEMKKGIKNLEATSMRLQ----VIKRNKITIINDCYNA 337

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P SMK+++ VL   S +  GR+IA+LG M E+GE +   HI++      Y ++ V L  
Sbjct: 338 SPDSMKSSMDVL---SSYKTGRKIAILGTMNELGEEAVKSHIEVGN----YALTKVDLL- 389

Query: 409 FHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             V   KD   +              E +D L   I+    + DVV+VK+S    F  ++
Sbjct: 390 IAVGEYKDYFKKGFTGENIITFATKEECIDKLDTIIK----ENDVVLVKASRGMKFEDIV 445

Query: 462 NLLLE 466
           + L E
Sbjct: 446 SSLEE 450


>gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
 gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
          Length = 447

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 226/462 (48%), Gaps = 29/462 (6%)

Query: 11  LQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L  I+ H+ G +   +    ++G+SIDSR+I     F   KG H DGH ++  A+ KGA 
Sbjct: 8   LNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGAY 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D  A      +PV  V+D L AL +L+ A        +IA+TGS GKTTTK+M+
Sbjct: 68  AALWQRD--AGEVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDMI 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   K     G+YNN IG+PLTL ++  D +  I E+GMS  GEI  L+H+  PHI
Sbjct: 126 EAVLSPHFKVKKTQGNYNNEIGLPLTLCQLDEDTEISILEMGMSGFGEISLLSHIAEPHI 185

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A IT I  +H+ +    E IA AK EI +GL  TG +F + D++  + L   +     K 
Sbjct: 186 AAITNIGESHMRDLGSREGIAKAKYEITDGL--TGPLFYDGDEALLKPLVKDN-----KD 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +  G +++ ++ + +     +     +Q +      +   +G H A+N  + + I S L
Sbjct: 239 AHRIGFNEDNEYYIHEMIMQDKH----LQFKVNDDTYIVPTLGSHNARNATIAIAIGSYL 294

Query: 307 ---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ +++ L +       G R      +    LI+++YNA+P SMKAAI  +SQ+
Sbjct: 295 GLSPEQINHSLQQLKL------TGMRMEQLEGKDGALLINDAYNASPTSMKAAIDTVSQM 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  +I V GD+ E+GE    +H  +   L    I +V+ +G     +  A      
Sbjct: 349 DSE---VKIIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNAARHISKAAEPFTT 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           V + +T + L   ++  L     V+ K+S       +IN LL
Sbjct: 406 VQHFDTKEALTNHLKGMLNAHTSVLFKASRGMKLETIINELL 447


>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 217/465 (46%), Gaps = 25/465 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+A   H  G         IS D+RS+ P   F A++G  +D HDF+  A   GAG  
Sbjct: 60  DVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGA 119

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV             P++ V D L AL  LA   R R +  + A+ GS GKTTTKEM+  
Sbjct: 120 VVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGA 179

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L++        G+ NN +GVPLTL R+       + E GM+  GEI  LT +++P   +
Sbjct: 180 ILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGL 239

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT + P HL     +E +A A+ E+F  L       +N DD       AK    G     
Sbjct: 240 ITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAK----GRGKRL 295

Query: 249 SFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +FG++++AD +L + + +  E   + V+ QG+   V  H IG H A N      +   L 
Sbjct: 296 TFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALG 355

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +  ++ L    P     +R          T++D+ YNANPASM AA+  L  +   G
Sbjct: 356 YSPEECVRGLESARPY---ARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAG 412

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL-------AEVLSLYNISHVWLSGFHVLA-LKDALP 419
            GR +AVLGDM E+G      H  L       A++++ +        GF   + L DA  
Sbjct: 413 -GRAVAVLGDMLELGPGELEEHAALGTRAAGRAQLVAFFGPRSE--KGFQAASGLGDAT- 468

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H++E +  L  ++   L  GDVV+VK+S      R++  L
Sbjct: 469 ----AHFTE-VGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 508


>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 450

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 224/444 (50%), Gaps = 24/444 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +   SI+S+SI     F  +KG  +DGHDFI  A+ +GA   +   D+       S P 
Sbjct: 24  LIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGAISFITQKDVNTE---KSCPY 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             V+D L A+  LA A R + K  I I ITGSVGKTTTKE +   LS+  ++Y   G++N
Sbjct: 81  LKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKTTTKEYVFNVLSNKFRSYKNEGNFN 140

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P ++  +P +V     E+GMS+ GEI FL+ + +P+I +IT I  AH+ N     
Sbjct: 141 NHIGLPYSILNIPDEVKVATLEMGMSNFGEISFLSKIAKPNIGIITNIGVAHIENLKTRY 200

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            I  AK+EI +G+   G + +N D+   ++L +  H L  K + + G   +ADF+ +  +
Sbjct: 201 NIFLAKSEIQDGMPNDGILIINNDN---DILYSHRHELKRKVV-TVGIENDADFRAKDIQ 256

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +     +  V      +E       +H   N L  + +  IL  + +   K +     K 
Sbjct: 257 KVDNGFFFVVSNHKYFIE----SFNFHDIYNSLFAIAVGEILGIEKEAIEKGIL---KKC 309

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G  +R+      G  T++D+SYNA+  SM +AI+ +   S    G++I VLGDM E+GE 
Sbjct: 310 GLRRRFEVIKKDG-LTVVDDSYNASTHSMMSAINGVCGFS----GKKILVLGDMLELGEF 364

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSL 441
           S+  H  + + +    I  +  +G     + D + +   SI  +Y+   + L +  +   
Sbjct: 365 SEQEHRKVGKYIVSKPIDVIICTGKDAFYIFDEVRKNSSSIKAYYASKEECLNILKKEIE 424

Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465
           ++  VV+ K+S       L++  L
Sbjct: 425 IET-VVLFKASRGMKLDELVDNFL 447


>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Staphylococcus aureus 04-02981]
 gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 452

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 218/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  L  ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 467

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 217/465 (46%), Gaps = 25/465 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+A   H  G         IS D+RS+ P   F A++G  +D HDF+  A   GAG  
Sbjct: 9   DVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGA 68

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV             P++ V D L AL  LA   R R +  + A+ GS GKTTTKEM+  
Sbjct: 69  VVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGA 128

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L++        G+ NN +GVPLTL R+       + E GM+  GEI  LT +++P   +
Sbjct: 129 ILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGL 188

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT + P HL     +E +A A+ E+F  L       +N DD       AK    G     
Sbjct: 189 ITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAK----GRGKRL 244

Query: 249 SFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +FG++++AD +L + + +  E   + V+ QG+   V  H IG H A N      +   L 
Sbjct: 245 TFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALG 304

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +  ++ L    P     +R          T++D+ YNANPASM AA+  L  +   G
Sbjct: 305 YSPEECVRGLESARPY---ARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAG 361

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL-------AEVLSLYNISHVWLSGFHVLA-LKDALP 419
            GR +AVLGDM E+G      H  L       A++++ +        GF   + L DA  
Sbjct: 362 -GRAVAVLGDMLELGPGELEEHAALGTRAAGRAQLVAFFGPRSE--KGFQAASGLGDAT- 417

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H++E +  L  ++   L  GDVV+VK+S      R++  L
Sbjct: 418 ----AHFTE-VGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 457


>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
 gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
          Length = 473

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/453 (31%), Positives = 221/453 (48%), Gaps = 31/453 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+  DSR+I P   F  I G  +DGH+F+   +  GAG      D       L  P+
Sbjct: 26  IIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGGAGAAFWQRDHQPVPADL--PL 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL  LA A    S+A ++ ITGS GKTT K+M++  L +    +   G+YNN
Sbjct: 84  IFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKDMVSALLETTYNVHKTQGNYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  M  D D  + E+GMS   EI  L+++ RP + VIT +  AHL      EE
Sbjct: 144 HIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREE 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNAD----- 257
           IA AK EI  G++  G +  + D+     + A+   +   G++T ++FG     D     
Sbjct: 204 IARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKPEGLRT-FTFGNQDTNDDYPTG 262

Query: 258 --FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             F  R     S +   E    G S+ +    +G H   N L  + + + L    D AI+
Sbjct: 263 LMFHARGIIFTSSRHAGE----GFSLPL----LGRHNVVNALAAMAVATHLGIG-DEAIR 313

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S F   +    R          T+++++YN++P ++KAA+ VL  +   G  RRIAVL
Sbjct: 314 --SGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGDMK--GYRRRIAVL 369

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDALPRSIHVHYSETMD 431
           GDM E+G+  +SFH ++ E LS  N   V+  G   L      K   P    + +++  +
Sbjct: 370 GDMLELGQREESFHAEIGEYLSPDNADLVFTYGPLSLHTANKAKARFPEGAVLSFTDK-E 428

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            L   +   + + D+V+VK+S       +++ L
Sbjct: 429 KLIEALLEQVTEKDIVLVKASRGMRLEHVVDAL 461


>gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 252

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 154/243 (63%), Gaps = 6/243 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLW    L  A  G  IG  P+  + G SID+RS+ P + FFAI+G   DGHDF+  A+ 
Sbjct: 5   PLWIPSALEAATGGRLIG-EPRA-IRGASIDTRSLEPGDLFFAIRGEARDGHDFVQAALD 62

Query: 63  KGAGLVVV---NTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV     D  A  G  L++P  G D VL A+ +L +AAR RS+A I+A+TGSVG
Sbjct: 63  KGAGAAVVAASRADDCAGAGPVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTLARMP    FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEAAQFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D++ FE L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNANFERLLAH 242

Query: 239 SHA 241
           + A
Sbjct: 243 AQA 245


>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida F1]
 gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas putida F1]
          Length = 455

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 195/394 (49%), Gaps = 25/394 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V     AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VAGVDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGGIAILNLDDKAFDIWKARA- 233

Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             G   + SF +S   ADF      R  + C       +   G+++ V  + +G H   N
Sbjct: 234 --GAHKVVSFARSNPKADFHASDIGRDARGCPS---FTLHGAGETVAVQLNVLGEHNVSN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        +   +      L+   P +GR    + A N     +ID+SYNANP SM A
Sbjct: 289 ALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPTSMCA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AI +L+  S    GR + VLGD+ E+G+ ++  H
Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375


>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
 gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
          Length = 454

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 30/450 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GIS D+R+I     F A++G ++DG ++I  A +KGA   VVN D   +I     PV
Sbjct: 25  MVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD+    +  LA          +IAITGS GKTTTK++++  L    K      +YNN
Sbjct: 82  IEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+  T+  +  D +  + E+G  + GEIR LT++  P IA+IT I  +HL N    E 
Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI EGL++ G   LN DD     +K + + L  K I +FG   ++D+++   K 
Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDPILREVK-QEYKLPEKNI-TFGIKPDSDYRMEMIKA 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S   +     ++E+    +G+H   N  M++ +  ++  D     K L      E 
Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDIAKGLKNI---EL 312

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R    L   F  L D SY +NP S+ + +   +    HG  R+IAVLGDM E+G+  
Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLE--TAYGLHGYSRKIAVLGDMLELGDNE 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436
            + H ++ + ++   I +V  +G     L + + +    +++E  D +F F         
Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 424 LQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus bromii L2-63]
          Length = 450

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 216/467 (46%), Gaps = 23/467 (4%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ +A  G  +G   +    +  +  DSR +     F AIKG   DGHDFI     
Sbjct: 4   FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEKCFA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +       +  + + P   V   L A+ K+  A R +    +I I+GSVGKT+T
Sbjct: 64  QGAVCALCE----KAPENATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS   KT+   G+ NN +GVPLTL  MP D +  + E+G+S  GE+  L+ +V
Sbjct: 120 KEMLYAVLSQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMTRLSEMV 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V+T I   HL N    + +  AK E+F+   +     LN DD     +K  +   
Sbjct: 180 QPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVKTVN--- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G K ++ FG     DF  +  K   +   +  +     +++V    IG +M  N L    
Sbjct: 237 GKKPVF-FGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNIDVEIPAIGTYMVTNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +     ++ +     R       +N G   +ID+ YNANP S++A++  LS
Sbjct: 296 AGKLLGLTDEEIANGVASYKTVGSRAN----VINTGKIKIIDDCYNANPTSVRASLDTLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +    +GR++A+LGDM E+G      H D         I  V   G     L   L + 
Sbjct: 352 NL----DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVITVG----ELAKELAKG 403

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 +T++     I  ++  GDVV+VK+S+S  F  ++  L + F
Sbjct: 404 ADGKAFDTIEDAKPEILKTIKSGDVVLVKASHSMQFENIVEFLKQNF 450


>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
 gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
          Length = 460

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 35/456 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R+I     +  IKG  ++GH F+  A++ GA   + N D         I V 
Sbjct: 27  IEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENGAVATLWNKD--EENPPTDISVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA + R      ++ ITGS GKTT K+M+   L +  +     G++NNH
Sbjct: 85  LVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLDTTYRVLKTDGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R+    D  + E+GMS  GEI FL++L  P +A+IT I  +HL +    + I
Sbjct: 145 IGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  TG +  N D+    LL ++      +T+ +FG S+  D         
Sbjct: 205 AEAKLEITSGLAPTGQLVYNGDEP---LLTSRVVNPVFETM-TFGSSEQNDLY------- 253

Query: 267 SEQSWMEVQLQGKSMEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              S +  +  G +  V            +G H   N L  + +      D +T  K L 
Sbjct: 254 --PSAISAEELGTTFTVSRETTYSFFIPVLGKHNVHNALSAIAVGHYFGLDNETIAKGL- 310

Query: 319 VFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
               KE +    R  L       T I+++YNA+P S+KAAI+++  +   G  ++I VLG
Sbjct: 311 ----KELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL--EGYKQKILVLG 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGL 433
           DM E+G+  + FH ++ E +    I +V   G   + ++     +     V + E  D L
Sbjct: 365 DMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAEDKVMHFEEKDEL 424

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              + +     DVV+VK+S       +I+ ++ + P
Sbjct: 425 VKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460


>gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS]
 gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS]
          Length = 1299

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 195/382 (51%), Gaps = 10/382 (2%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P   V  V  AL  LA+A R      I+A+TGS GKT+T  M+   L           +
Sbjct: 504 VPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKRPTKN 563

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +N   GV   +A +  +    + E+  S L   G  R   +++RP +A+IT+I  AHL  
Sbjct: 564 FNTFDGVNGEVANLTNEA-IAVIEVAASFLSQRGGPR--PNVLRPEVAMITSIGEAHLEY 620

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   + +A  K+ +F+ L   GT  +  D   ++ +  ++ A G  T+ SFG   +AD  
Sbjct: 621 FGSPQGVAEVKSNVFD-LMSRGTAVIPRDADTYDYMVQRARAAGATTV-SFGAHPSADAH 678

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           L  +   +    +E ++ G+ +      +G H A+N +  LG+V+ L  D   A  AL+ 
Sbjct: 679 LLSY--SAADGVVEAEIFGERITYELGALGRHFARNSVGALGVVAALGLDWRRAAGALAS 736

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GRG  +      G FTLID++YNANP+S++AAI +LS+ +    GRRIAVL DM 
Sbjct: 737 SREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERATPPRGRRIAVLADML 796

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G  S+ FH  LAE L    I  V+L G  + AL D LP  I   Y  T+DGL   +  
Sbjct: 797 ELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEIRGQYYPTVDGLQAALDR 856

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
              DGDVV+ K SN    ++++
Sbjct: 857 EFADGDVVLFKGSNGTELHKVV 878


>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 449

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 205/397 (51%), Gaps = 32/397 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR++A  E F A+ GP++DGHDFI+ A  +GA   +V  D +       IP+  V
Sbjct: 10  GVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGIPLIRV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------------- 135
            +   AL +LA   R R    ++A+TGS GKTT KEM+   L    +             
Sbjct: 70  QNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEEMRTDAPDA 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             A  G+ NN IG+PLTL R+     + + E+GM+H GEI +L+ L +P +A+IT    A
Sbjct: 130 VLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVALITNAGDA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSK 254
           H+     +E +A AK EIFEGL++ G   +N DD    L +  +   G + I  FG KSK
Sbjct: 190 HIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDPHNRLWRELA---GNRQIIDFGLKSK 246

Query: 255 ---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              +AD++L         + + + L     E      G H  +N L    +   +   + 
Sbjct: 247 AKVSADYKL-----TFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGVSLK 301

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           T    LS F   +GR +R +C +     TLID+ YNANP S++AA++VL++     EG++
Sbjct: 302 TIASGLSTFGGVKGRMQR-KCGVRGA--TLIDDCYNANPDSVRAALAVLARA----EGKK 354

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + VLGDM E+G+  + FH  + +   +  I  +   G
Sbjct: 355 VLVLGDMGELGDKGREFHEQIGDEARIAGIDELMALG 391


>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
 gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
          Length = 454

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 195/400 (48%), Gaps = 17/400 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L   +QG   GI      +G+S D+RS+AP   F  ++G  +DGH FI  A +KGA   
Sbjct: 11  ELASVVQGRLQGI--NIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAA 68

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           ++   +     +  +P   V D   AL +LA   R R    I+A+TGS GKTT KEM+  
Sbjct: 69  LLEQRI-----NDPLPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMIAS 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L  ++   A  G+ NN IGVPLTL  +     F + E+G +  GEI +L+ L RP +A+
Sbjct: 124 ILGWVEPILATRGNLNNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRPQVAL 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +  +  L    + 
Sbjct: 184 ITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPHFSYWRDLAGGL---PVM 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            FG S++A+   R     ++ S   +      +++     G H   N L        L  
Sbjct: 241 GFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAAIALGV 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      +L+      GR +  R     G   L+D++YNANPAS++AA+ +L++      
Sbjct: 301 DRQHLSASLAALPSIPGRLQIRR---GIGGMRLLDDTYNANPASLQAALELLAKFP---- 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           G R  VLGD  E+GE +   H  + +      ++ ++  G
Sbjct: 354 GERALVLGDFAELGEEAAPLHQAMGKQARAAGVNRLYTLG 393


>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 438

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 214/453 (47%), Gaps = 40/453 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85
           +  I +DSR       F  I G H DGHDFI  AV++GA  V+ + D+         +  
Sbjct: 14  IEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKKYPEVRF 73

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V D   AL ++    + R +  +I +TGS GKTT + ML +ALSS ++ +   G+ N+
Sbjct: 74  WQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVFQTAGNANS 133

Query: 146 HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
            +GVP+TL ++     +  + ELGMS  GE+  +  + R  +A+IT I  AH+ N    E
Sbjct: 134 QLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENLKTKE 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            I   K  I +G      ++LN +D     L + + H LGI    S GK           
Sbjct: 194 NILLEKLHILDGAADGAALYLNGEDPLLASLTEERIHDLGI----SLGKR---------- 239

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   +E+       E+     G+HM QN    L +   L    +  ++AL  F   
Sbjct: 240 --------VELHFYRAEEEIPLSAAGHHMQQNAAAALAVSLDLGLQREGVLRALRGFSGL 291

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GRG++    L++    ++D+SYNA+P ++KA++ VLS+       R+IA+L DM E+GE
Sbjct: 292 KGRGEKL---LSRSGIGILDDSYNASPDALKASLLVLSKEKGR---RKIALLSDMLELGE 345

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---------KDALPRSIHVHYSETMDGLF 434
            S+  H D    LS   I  V L G   L +         +    R I V +    + L+
Sbjct: 346 RSEELHEDCGAFLSSLPIDRVLLYGEKSLGILRGIRREEKRRGDGRQIPVSHFSNAEELY 405

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      GD+V+ K S+S G  RL+    EE
Sbjct: 406 RELLREAAPGDLVLFKGSHSMGLSRLVERFREE 438


>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 452

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 223/451 (49%), Gaps = 37/451 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIK 315
                 + + +   +  K     H+    +G H  +N  + + +   + ++   +   +K
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLK 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +S+       G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +L
Sbjct: 311 NVSL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILIL 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434
           GD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D + 
Sbjct: 361 GDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMI 420

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + + L   D V+VK S       ++N L+
Sbjct: 421 EVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 452

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + L   D V+VK S       ++N L+
Sbjct: 424 INDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
 gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
          Length = 475

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/488 (29%), Positives = 227/488 (46%), Gaps = 39/488 (7%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P ++  +LL+A+ G  +       + G+S D+R +     +  +KG ++DGHDF+  AV+
Sbjct: 7   PQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVK 66

Query: 63  KGAGLVVVN--------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           KGAG V+V+        T    + G L I V   DD L AL  LA   R      +IAIT
Sbjct: 67  KGAGGVLVDVHHAFILETGSKKTDGCLKILV---DDTLKALGDLARFWRRAVGRPVIAIT 123

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEM    L          G+ NN IG+PLTL RM    D  + ELG +  GE
Sbjct: 124 GSSGKTTTKEMTAAILEQTFSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGTNARGE 183

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I+ LT +  P I ++T I PAHL     +E I   K +++  + K+G    N DD     
Sbjct: 184 IKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADDEAMAP 243

Query: 235 LKAKSHALGIKTIYSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
           L+          + ++G +  AD     + KW +  +   +     G    VVH    G 
Sbjct: 244 LRRSWQG----KMLTYGITSRADMTASDIAKWGESGQSFTLNA---GSESTVVHLSAFGM 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L    +       ++   + L  FHP   R + +   L  G F L+D++YNANP
Sbjct: 297 HNIYNALAAAALSRAAGIGINEISQGLRNFHPVAARFEVH--FLPNGAF-LVDDTYNANP 353

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           AS++ A+  +  +   G  R + VL DM E+G+ ++  H  +    +  ++  ++L G  
Sbjct: 354 ASVREALKTIQTLK--GNHRSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSL 411

Query: 409 ---FHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                  A+K  +     + +    E +D +  F+++    GD ++VK S       ++ 
Sbjct: 412 SRSTAAGAIKGGMTEERILFFEDPEEILDDVLSFVEA----GDWILVKGSRLMKMEEIVK 467

Query: 463 LLLEEFPA 470
            +L+  PA
Sbjct: 468 KILDRTPA 475


>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
 gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
          Length = 454

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 30/450 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GIS D+R+I     F A++G ++DG ++I  A +KGA   VVN D   +I     PV
Sbjct: 25  MVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD+    +  LA          +IAITGS GKTTTK++++  L    K      +YNN
Sbjct: 82  IEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+  T+  +  D +  + E+G  + GEI  LT++  P IA+IT I  +HL N    E 
Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI EGL++ G   LN DD     +K + + L  KTI SFG   ++D+++   K 
Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDPVLREVK-QEYKLPEKTI-SFGIKPDSDYRMEMIKA 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S   +     ++E+    +G+H   N  M++ +  ++  D     K L      E 
Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDVAKGLKKI---EL 312

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R    L   F  L D SY +NP S+ + +     +  HG  R+IAVLGDM E+G+  
Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLETAYGL--HGYSRKIAVLGDMLELGDNE 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436
            + H ++ + ++   I +V  +G     L + + +    +++E  D +F F         
Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +Q  +VD  +++VK+S++  F +L+  + E
Sbjct: 424 LQELIVDNTLILVKASHAMQFDKLVEQIKE 453


>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 473

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 216/456 (47%), Gaps = 39/456 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----- 85
           +IDSR I+  E FFA+KG H DGH F+  A + GA L VV+T+   +             
Sbjct: 32  AIDSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTE 91

Query: 86  ---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                V D L AL KLA   R +    I+ I GS GKTTTKEM    L +  +  A  G+
Sbjct: 92  NLFLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKEMTAAVLGTTFRVVATEGN 151

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NNHIGVPLTL R+  D +  + E+G++H GE+  L  +  P   +IT I   H      
Sbjct: 152 FNNHIGVPLTLFRLRDDTEIAVVEMGINHHGEMNELCQIAEPTHGLITNIGHEHCEFLGT 211

Query: 203 IEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------N 255
            EEIA A+ E++  L +T G+ F+N DD    L    +  L ++T+Y   +         
Sbjct: 212 PEEIAMAEGELYRYLSRTGGSGFVNADDG---LASQTAGELNLQTLYGIEQPNLGLNIWA 268

Query: 256 ADFQLRK-----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            + QL +     +K C+ +  + + LQ           G H   N L    I     A +
Sbjct: 269 KEVQLNQQGCASFKICTPKQALTLNLQIS---------GRHNVYNALAAAAIGLNFGAKL 319

Query: 311 DTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++   AL  F PK G  +  R CA      T++++SYNANP SM++A+  L+ +    +G
Sbjct: 320 ESVKLALEHFVPKSGSKRMERICAAG---LTILNDSYNANPESMRSALGTLASLIC--DG 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           ++I +LGDM E+G +S++ H  L E +    I   +  G  +       P     H++ T
Sbjct: 375 KKIVLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGFGNAMKWTCQEAPNKCKGHFN-T 433

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +   ++     GD ++ K S       ++  LL
Sbjct: 434 KSEMVQALKEVAAPGDALLFKGSRGMKMEEVLEALL 469


>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
 gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
          Length = 454

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 30/450 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GIS D+R+I     F A++G ++DG ++I  A +KGA   VVN D   +I     PV
Sbjct: 25  MVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD+    +  LA          +IAITGS GKTTTK++++  L    K      +YNN
Sbjct: 82  IEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+  T+  +  D +  + E+G  + GEIR LT++  P IA+IT I  +HL N    E 
Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI EGL++ G   LN DD     +K + + L  KTI + G   ++D+++   K 
Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDPILREVK-QEYKLPEKTI-TLGIKPDSDYRMEMIKA 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S   +     ++E+    +G+H   N  M++ +  ++  D     K L      E 
Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDIAKGLKNI---EL 312

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R    L   F  L D SY +NP S+ + +   +    HG  R+IAVLGDM E+G+  
Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLE--TAYGLHGYSRKIAVLGDMLELGDNE 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436
            + H ++ + ++   I +V  +G     L + + +    +++E  D +F F         
Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 424 LQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
 gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
          Length = 452

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 222/451 (49%), Gaps = 37/451 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIK 315
                 + + +   +  K     H+    +G H  +N  + + +   + +    +   +K
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNRIYQNLK 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +S+       G R      +   T+I+++YNA+P SM+AAI  L+ ++    GRRI +L
Sbjct: 311 NVSL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLNTLT----GRRILIL 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434
           GD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D + 
Sbjct: 361 GDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMI 420

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + S L   D V+VK S       ++N L+
Sbjct: 421 EVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
 gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
          Length = 467

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 215/448 (47%), Gaps = 21/448 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGSLS 82
            V G+  DSR    Q  F  + G  +DGH+++   V + +    +   N     S  ++ 
Sbjct: 25  MVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEASAAAFLWQKNHGAPPSENAIE 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                V+D L AL  LA A    +  +++ ITGS GKTTTK+++   L +  K +   G+
Sbjct: 85  -----VEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHKTEGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNHIG+PLT+  MP D D  I E+GMS  GEIR L ++ +P +A+IT I  +HL     
Sbjct: 140 YNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQPDVAIITNIGESHLLQLGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNADFQ 259
             EIA AK EI  GL+  G +  N D+     + A+S  +   G+K +++FG +   D  
Sbjct: 200 RAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVKPEGLK-LFTFGLATGNDDY 258

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +     E S       GK    +   +G H   N L  L +      D D   K LS 
Sbjct: 259 PTEITSDGEGSLFITAQSGKEAFRLPL-LGQHNVVNGLAALAVARHFNVDADHIRKGLSS 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                 R +   C       T+++++YNA+PASMKAAI  LS      +GR++AVLGDM 
Sbjct: 318 LKLTGMRIEVVNCP---NGLTVLNDAYNASPASMKAAIQTLSAYKT--DGRKVAVLGDML 372

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLF 436
           E+G   + FH ++    + +++  ++     G  +      L  + +VH       L   
Sbjct: 373 ELGPEEKQFHEEIGIFAAKHDVEVLFTYGALGTSIAQGAQGLMPTANVHAYTDKQELIQH 432

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +Q  L   D+V+VK+S       +++ L
Sbjct: 433 LQVYLHANDIVLVKASRGMRLEEIVDAL 460


>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
 gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
          Length = 452

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 218/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  L  ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 459

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 228/446 (51%), Gaps = 23/446 (5%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  IG     +++ I  DSR +   + F A+KG ++DG DF+  AV KGA  V+V+  M 
Sbjct: 15  GELIGDKTSCWISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVDR-MQ 73

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              G L++PV  V D L AL  +A+  R    A IIAITGS GKT+TKEM+   L    K
Sbjct: 74  PGFGPLAVPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQKYK 133

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           T    G++NN IG+PL+L +M    ++G+FELG +H GEI  L+ ++ P I ++T I  A
Sbjct: 134 TVCTSGNFNNQIGLPLSLLQMDKTTEYGVFELGTNHPGEIATLSRIIAPDIVIVTNIGSA 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+ +F  +E IA  K ++   +   G   L  DD + + L  +S     + I+  G  +N
Sbjct: 194 HVGHFGSVEAIAQEKTDLLTFVSARGFAILGTDDFWSKRLHVRSAG---RVIW-VGDRQN 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM--TLGIVSILTADVDTA 313
           +   L +           +  + +  EV    +   MA+N L    +G +S L+++  T 
Sbjct: 250 SLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSLSSEEIT- 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L      EGR   +   +  GF  ++D+SYNANP SM +A+  L +  P    ++I 
Sbjct: 309 -RGLEKTSFPEGRLTVH--PIKNGF--VLDDSYNANPQSMLSALRALVEY-PF-SSKKIV 361

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLG M E+G+ +++ H ++        +SHV + G +   + + L     P       ++
Sbjct: 362 VLGSMGELGDKARASHFEVGSFAGGLPLSHVIVVGPYGEDVYEGLRSSSFPIDCIFRTAD 421

Query: 429 TMDGLFLFIQSSLVDGDV-VVVKSSN 453
           T +  F      L++G+V V+VK S 
Sbjct: 422 TEEAFFCL--HKLLNGNVTVLVKGSR 445


>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
 gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
          Length = 452

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 219/463 (47%), Gaps = 17/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF+++ +A+ G  I    +   N +SID+R ++    F AI G +++G+ FI +AVQKG
Sbjct: 1   MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 60

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A L +V+            I +  V+D   AL  LA   R      ++AITGS GKT+TK
Sbjct: 61  AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L S  + +   G++NN IG+PL + ++    +  + E+GM+H  EI  +    R
Sbjct: 121 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    E I  AK EI +   K   + +N D+        K H   
Sbjct: 181 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL-----KKHEF- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K+I     S N +  L     C  +   E ++QG+ +  V +  G H  +N ++++   
Sbjct: 235 -KSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGEKL--VLNMPGKHNIENAMLSIAAA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K L        R       +N     ++D+SYNA+P SM AAI V   +
Sbjct: 292 LKLGLTFEEIRKGLKDLELTAMR----LDIVNGENIVIVDDSYNASPDSMIAAIDVTKNL 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +   RRIAVLG M E+GE S   H ++       NI  + + G    A  D      +
Sbjct: 348 KGN---RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               ET + L  F+++ +  GD+ ++K+S    F  ++  L E
Sbjct: 405 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 447


>gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Paenibacillus polymyxa SC2]
 gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus polymyxa SC2]
          Length = 467

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 218/446 (48%), Gaps = 17/446 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIP 84
            V G+  DSR       F  + G  +DGH ++   V ++GA   +   D  A     ++ 
Sbjct: 25  MVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSERGATAYLWQKDHGAPP---TVN 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V+D L AL  LA A    +  +++ ITGS GKTTTK+++   L +  K +   G+YN
Sbjct: 82  AIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHKTEGNYN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+PLT+  MP D D  + E+GMS  GEIR L ++ +P +AVIT I  +HL       
Sbjct: 142 NHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQPDVAVITNIGESHLLQLGSRT 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRK 262
           EIA AK EI  G++  G +  N D+     + A+   +  +   +++FG + + D    +
Sbjct: 202 EIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVKPEGLELFTFGLAADNDDYPTE 261

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                E S       G+    +   +G H   N L  L +      D D   K LS    
Sbjct: 262 ITSDGEGSLFITAQSGQEAFRLPL-LGQHNVVNGLAALAVARHFNVDADHIRKGLSSLKL 320

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +  +C+      T+++++YNA+PASMKAAI  LS       GR+IAVLGDM E+G
Sbjct: 321 TGMRIEVVKCSDG---LTVLNDAYNASPASMKAAIQTLSAYKTG--GRKIAVLGDMLELG 375

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSETMDGLFLFIQ 438
              + FH ++    + +NI  ++  G    ++    +  +P + +VH       L   ++
Sbjct: 376 AEEKQFHEEIGRFAAKHNIEALFTYGALGASIAQGAQGTMP-TANVHAYTDKQKLIQHLR 434

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           S L   D+V+VK+S       +++ L
Sbjct: 435 SYLHADDIVLVKASRGMRLEEIVDAL 460


>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
 gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
          Length = 452

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 223/451 (49%), Gaps = 37/451 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIK 315
                 + + +   +  K     H+    +G H  +N  + + +   + ++   +   +K
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLK 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +S+       G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +L
Sbjct: 311 NVSL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILIL 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434
           GD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D + 
Sbjct: 361 GDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMI 420

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + + L   D V+VK S       ++N L+
Sbjct: 421 EVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 466

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 221/461 (47%), Gaps = 45/461 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           GIV QG V     DSR I     F  + G  +DGHDF    +Q GAG  +       S G
Sbjct: 24  GIVVQGVVT----DSRQITKGCLFVPLAGERFDGHDFASDCLQAGAGACL----WALSKG 75

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +   P   VDD L AL  LA +    + A ++ ITGS GKTTTK+++   LS+  K +  
Sbjct: 76  TPPGPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKDLVYALLSTTYKVHKT 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NNHIG+PLT+  MP D +  + E+GMS  GEI  L+ +  P  AV+T I  +HL  
Sbjct: 136 KGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEPETAVVTNIGESHLLQ 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFG-KSKN 255
               EEIA AK EI  G++  G    N D+     + A+   +   G++T  +FG + +N
Sbjct: 196 LGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLAEPSTVKPEGLQT-ATFGLRPEN 254

Query: 256 ---------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                     D Q       SE   +E+ L           +G H   N L  + +    
Sbjct: 255 DQYPTGILFTDHQTLFTPHGSEGDPLELPL-----------LGEHNVSNALAAITVARHY 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               + AI+    F   E  G R      +   T+++++YNA+P SMKAA+ VL  +   
Sbjct: 304 GVG-EAAIR--EGFSKVELTGMRIEVITGRSGITILNDAYNASPTSMKAALGVLEHMK-- 358

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDALPRS 421
           G  ++IAVLGDM E+G+    +H ++ E+L+   +  ++  G    H+   A K   P  
Sbjct: 359 GYRKKIAVLGDMLELGDSEADYHREIGEMLTPGTVDQLFTCGPLSRHIAEGAKKQLDPNF 418

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           IH +  ++   L   + S L   DVV+VK+S       ++ 
Sbjct: 419 IHAYTDKSE--LIRKLVSLLHPQDVVLVKASRGMKLEEVVE 457


>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Paris]
 gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Paris]
 gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 445

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 145/444 (32%), Positives = 215/444 (48%), Gaps = 25/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN      I  + IP F
Sbjct: 20  ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQF 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L AL K+A A R      IIA+TGS GKTT KEM+   L   + ++A  G+ NNH
Sbjct: 76  VVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I+ +
Sbjct: 134 IGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           A +K EI +GL  TG   +N DD+   F++ L A       K I  F     AD   +  
Sbjct: 194 ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIAD------KKILRFSSLHPADIYAQDI 247

Query: 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +     ++   + L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 248 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      Q   T+ID++YNAN  S+  A+ VLS   P   GR+I V GDM E+G
Sbjct: 308 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RP---GRKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A       H+  + + L   +++ L 
Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442


>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 461

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 231/478 (48%), Gaps = 33/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL T+ ++ +A  G  +     G V G+S DSRS+   + F  + G  +DGHDFI +A
Sbjct: 1   MKPL-TYEEVAKATGGR-VEKSFSGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            + GA   +   D    + +L++  PV  VDD   AL +LA   R       +AITGSVG
Sbjct: 59  FEAGASATLCAEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   L+   +     G++NN IG+PLTL R+  D   G+ E+GMS  GEI  L
Sbjct: 119 KTTTKEMIAAVLTRRYRVLKNEGNFNNEIGLPLTLFRLE-DHQVGVVEMGMSGFGEISRL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +V+PH+AVIT I  +H+      E IA AK EI E L K   + LN D      L AK
Sbjct: 178 SAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSP---ELYAK 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              L  +T+Y FG  K             +    +V        V     G H   N L 
Sbjct: 235 RGTLTPRTVY-FGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +       +D   + L    P + R +  +         +ID+ YNA+P SMKAA++
Sbjct: 294 AIAVGLEFGLSIDEIRRGLMELKPTKMRLEFKKTPFGA---VVIDDCYNASPDSMKAALN 350

Query: 359 VLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAE--------VLSLYNISHVWLSGF 409
           VL ++   GEGRR +A+LGDM E+G+ +   H ++          ++ + N +     G 
Sbjct: 351 VLREL---GEGRRKVAILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNHAEDLAKGA 407

Query: 410 HVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               L    PR IH   +  E +D L   ++    D D+++VK+S       +++ L+
Sbjct: 408 TEAGLG---PRFIHTFSTNKEAIDRLGELVE----DCDIILVKASRGMKLEEIVDFLV 458


>gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum EA 2018]
          Length = 455

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 219/463 (47%), Gaps = 17/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF+++ +A+ G  I    +   N +SID+R ++    F AI G +++G+ FI +AVQKG
Sbjct: 4   LTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 63

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A L +V+            I +  V+D   AL  LA   R      ++AITGS GKT+TK
Sbjct: 64  AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L S  + +   G++NN IG+PL + ++    +  + E+GM+H  EI  +    R
Sbjct: 124 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    E I  AK EI +   K   + +N D+        K H   
Sbjct: 184 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL-----KKHEF- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K+I     S N +  L     C  +   E ++QG+ +  V +  G H  +N ++++   
Sbjct: 238 -KSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGEKL--VLNMPGKHNIENAMLSIAAA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K L        R       +N     ++D+SYNA+P SM AAI V   +
Sbjct: 295 LKLGLTFEEIRKGLKDLELTAMR----LDIVNGENIVIVDDSYNASPDSMIAAIDVTKNL 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +   RRIAVLG M E+GE S   H ++       NI  + + G    A  D      +
Sbjct: 351 KGN---RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               ET + L  F+++ +  GD+ ++K+S    F  ++  L E
Sbjct: 408 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 450


>gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 463

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 242/452 (53%), Gaps = 33/452 (7%)

Query: 27  VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           +N ISIDSR I  ++   F AIKG  ++G  FI  +++ GA + V+N   V    +++IP
Sbjct: 24  INSISIDSRKIFNKKNCLFIAIKGKKFNGECFIKESIKNGA-VAVINARKV----NINIP 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V + + +L +L+   R  SKA IIAITGS GKT+ KE++   L++   T A   ++N
Sbjct: 79  HLIVKNTIISLLRLSKWIRENSKAKIIAITGSSGKTSVKEIIFNILNTFSNTIATKKNFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N+IGVPLTL R+  + +F I E+G +  GEI+  ++L++P IA+I  I+ +HLS F  I 
Sbjct: 139 NNIGVPLTLLRLNKNHNFAIIEVGGNKFGEIKTSSNLIKPDIALINNISESHLSGFKSIN 198

Query: 205 EIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQL 260
            ++ AK EIF G++  K G I LNY+ + ++  K K   L    ++ FG  K+K   F L
Sbjct: 199 GVSKAKEEIFSGIQGKKNGIIVLNYNSNDWKEWKKK---LKDNLVFWFGIIKNKKKYFYL 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  K+ +      +  Q +  EV    IGYH   N +  + I  ++ A +++    L   
Sbjct: 256 KNIKKENFCIKFSISTQKEECEVSLPLIGYHNLFNAMAAIAISFLVGASMESIKYGLKKS 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +P + R   +   LN+    +ID+SYNAN  SM +AISVL+ +     G +I ++GD+ E
Sbjct: 316 YPFKRR--LFPIFLNKNKI-IIDDSYNANVGSMISAISVLNNM----PGYKIIIIGDILE 368

Query: 381 MGELSQ-SFHIDLAEVLSLYNISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLF 434
           +G+  +   H ++   +S   I+ V+  G+      + + K     +I    SET+  + 
Sbjct: 369 LGKQKEIIIHKNIGFFISKSKINKVFSIGYLSYFSSIFSKKGKHFYNIDYLISETIKMI- 427

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                S      V++K SN    Y ++ +L E
Sbjct: 428 -----SRYPIITVLIKGSNKTDAYNIVKMLQE 454


>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
 gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
          Length = 450

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 214/457 (46%), Gaps = 37/457 (8%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I   P   V+GI+ DSRSI   +AF A+KG +++GHDFI  A++KGA  ++V  D   S+
Sbjct: 22  ISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIEKGAATLIV--DQPVSV 79

Query: 79  GSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            S S IPVF V + L    +LA   R +    +IAITGSVGKTTTKE++   L++  K +
Sbjct: 80  NSSSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATQGKVH 139

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             + +YNN IGVP TL  +    +  + E+GM   GEI  L  + RP IAVIT +  AH+
Sbjct: 140 KTLANYNNEIGVPKTLLELDETHNSAVIEMGMRGRGEIALLAQITRPTIAVITNVGTAHI 199

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                   IA AK E+      +    LNYD        AK    G    Y F       
Sbjct: 200 GRLGSEAAIAEAKCELLAESPSSSIAVLNYDHPLLT-ETAKRVWQGETITYGFSGGDIVG 258

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L             +++ G    +     G H A N +  L +  IL  D  +  + +
Sbjct: 259 ELL---------DLTTLRVNGLDFNLPLS--GRHHALNFMAALAVAKILGIDWTSLQEGI 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            V  P  GR KRY+ A +     L+DE+YNA   SM AA+ +L         R IAVLG 
Sbjct: 308 KVNLPS-GRAKRYQLATD---ILLLDETYNAGLESMLAALDLLKATPGQ---RHIAVLGT 360

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S+  H  + E +    I  +++       L D          +  +D      
Sbjct: 361 MKELGSFSEQLHRQVGERVQKLGIDRLFV-------LVDDPEAKFIAEAATAVDCECFQT 413

Query: 438 QSSLVD--------GDVVVVKSSNSCGFYRLINLLLE 466
            + L++        GD ++ K+S+S G  R++  L++
Sbjct: 414 HADLINRLKEVIDFGDRILCKASHSVGLNRVVEELIQ 450


>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 442

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 229/454 (50%), Gaps = 26/454 (5%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSL 81
           P   + G S+DSR +   + F  + G   DGH+FI  A+  GA   +VN D+ ++   S+
Sbjct: 4   PDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRHSV 63

Query: 82  SIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTY 137
             P V  V+D L AL ++A   R +   +++A+TGS+GKTTTK+M+   L+   SI KT+
Sbjct: 64  HPPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSILKTH 123

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+ N+ IG+PL L  +       + E+GM++ GEI  L  L RP++ VIT IA +H+
Sbjct: 124 ---GNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRIAESHI 180

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E IA AK E+ E L   GT  LN DD++   L++K        +  +G + + D
Sbjct: 181 EKLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPG----EVLYYGLT-DGD 235

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 +   +++  ++    KS ++    IG H   N L  + +  +   D+  +I+AL
Sbjct: 236 LSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGLDLTQSIRAL 295

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F    G   R +   ++    +ID++YNAN  S  AA  VL+ +  +   RRIAVLGD
Sbjct: 296 EGF---TGTSMRNQIKYHKDMI-IIDDTYNANVQSTLAAFDVLTNLPLN---RRIAVLGD 348

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDG 432
           M E+G+ ++  H  + E        ++   G         A K  +P   ++H ++    
Sbjct: 349 MFELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKLGMPEHQNIHVADREQA 408

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +Q  +  GD ++VK S      +++N LL+
Sbjct: 409 IQRILQ-IVKSGDGILVKGSRGMAMEKIVNSLLK 441


>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
 gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
          Length = 454

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 214/459 (46%), Gaps = 19/459 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L  A+QG   G       +G+S D+RS+ P   F A++G  +DGH FI  A +KGA
Sbjct: 8   SLRELTSAVQGRLQGA--NVAASGVSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              ++   +     +  +P   V D   AL +LA   R R    I+A+TGS GKTT KEM
Sbjct: 66  SAALLEQAI-----NDPLPQIEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKEM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L   +   A  G+ NN IGVPLTL  +     F + E+G +  GEI +L+ L RP 
Sbjct: 121 IASVLGWREPVLATRGNLNNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRPQ 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +  +  L   
Sbjct: 181 VALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPCFSYWRDLAGEL--- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG SK+A+   R     +  S   +       ++     G H   N L        
Sbjct: 238 PVIGFGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATIA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D      +L+      GR +  R     G   L+D++YNANPAS +AA+ +L++   
Sbjct: 298 LGVDRQHLSASLAALSSVPGRLQIRR---GIGGMRLLDDTYNANPASFQAALELLAKFP- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R  VLGD  E+GE + S H  + +      ++ ++  G       +A  R   +H
Sbjct: 354 ---GERALVLGDFAELGEEAASLHRIMGKQARAAGVNRLYTLGRLGAFAAEAFGRGA-LH 409

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + E    L   +Q  L     ++VK S      +++ +L
Sbjct: 410 FLEQRS-LLEVLQEELHPNITLLVKGSRCMRMEQIVAVL 447


>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 146/466 (31%), Positives = 222/466 (47%), Gaps = 34/466 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + I G  I    +  V+G+ IDSR    +  FFA+ G   +GHDF L A + GA  VV
Sbjct: 9   LSKMINGKIIRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVV 68

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V  + +       I V   +D L AL  +A + + R     +A+TGS GKTTTK+M    
Sbjct: 69  VKRE-IEGADCFQIKV---EDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASV 124

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   KT   IG++N+  GVPLTL  +    +  + E+GM+H GEI  ++ LV P +A+I
Sbjct: 125 LSKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISELVEPDLAMI 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   H+ N    E I  AK EI +GL+K GT+ +N DD FF     K +      +  
Sbjct: 185 TNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFF-----KDYTNDEFNVVK 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G + + DF+       S+ +   V   GK+          +   N L  +        +
Sbjct: 240 VGIN-HGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFHFGLN 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + L  F P    G R +     G  TLID++YN+NP ++K A+ +L++I   G  
Sbjct: 299 YEQIKEGLDDFMP---TGNRMKIEEVNG-ITLIDDTYNSNPEALKEALGLLNRIG--GNN 352

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R++AVLGDM E+GE S+  H    +  +   +         +LA  D     I       
Sbjct: 353 RKVAVLGDMLELGEKSEEEHEACGKAAAENGVE-------LLLACGDYAMHYIKGAGENG 405

Query: 430 MD---GLFLFIQSSLV--------DGDVVVVKSSNSCGFYRLINLL 464
           MD    L+ F ++ LV        +GD V+VK+S    F  +++ +
Sbjct: 406 MDPGKALYFFEKNYLVEEVFDFLKEGDFVLVKASRGMKFEDVVDAI 451


>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 456

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/448 (31%), Positives = 221/448 (49%), Gaps = 28/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+S DSR++   + F  +KGP+YDGHD++  AV+ GA   +        +G L +PV 
Sbjct: 25  INGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAVEHGAAACLSEE----VVGGLPVPVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA   R      ++A+TG+ GKT+TKEML   L+         G++NN 
Sbjct: 81  QVEDTLQALGELARTIRSGFDGPVLAVTGTTGKTSTKEMLASILAQGSDGLKTEGNFNNL 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTLAR+  +  + + ELGMS  GEI  LT + +P +A+IT +   HL+    IE +
Sbjct: 141 IGLPLTLARLSDEHRWMVLELGMSQHGEIERLTEIAQPDVALITNVGAGHLAGVGNIEGV 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+F GL+   T  +N DD+    L       G++ I         DF L    Q 
Sbjct: 201 ARAKGELFSGLKAGATAVVNRDDALIAALPIPD---GVRVI---------DFSLTYQTQV 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              S    Q    ++ V    +       G H   N L        +   ++     L  
Sbjct: 249 RATSIDSGQQASFTLHVGESQVRVELPLPGRHQVYNALAAAAAAHAVGCSLEQIATGLGC 308

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR +     L  G  T++D+SYNANP SM+AA+SVLS      +G +IAVLGDM 
Sbjct: 309 VKMAAGRLEVR--TLPHG-ATVLDDSYNANPQSMQAALSVLSDWPC--QGTKIAVLGDML 363

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G++SQ+ H +L  + +      +    +    LK  + +        + D +  +++ 
Sbjct: 364 ELGDVSQACHEELGRLAAQRAEQVLCYGDWAAAVLKGVVEQGGQGAICTSHDEILDWLER 423

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + + D ++VK S      ++++ LL +
Sbjct: 424 QVREDDCILVKGSRGMRMEKVVHALLAQ 451


>gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 479

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 215/450 (47%), Gaps = 24/450 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR + P   F A+ G   DGHDF   A++ GA  V+    +        +P   V 
Sbjct: 31  VVIDSREVRPGSLFAALPGERVDGHDFARKAIEAGATAVLAARPV--GTADAPVPAIVVP 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV+ A+  LA A   R  AT++A+TGS GKT+TK+++   L     T    GS NN IG+
Sbjct: 89  DVIAAMGALARAVVERLDATVVALTGSAGKTSTKDLIAQLLQRRGPTVWTPGSLNNEIGL 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT           + E+G    G IR+L  L  P I ++  +  AH+  F G E+IA A
Sbjct: 149 PLTAMSADEATLHLVLEMGARGKGHIRYLATLTPPRIGLVLNVGTAHIGEFGGREQIAEA 208

Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           K E+ E L   E+ G   LN DD     + +++ A   +T+  FG++++AD +    +  
Sbjct: 209 KGELVEALPPAEEGGVAVLNADDPLVRAMMSRTKA---RTVL-FGEAEDADVRAGNVRLA 264

Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +    +       EV     G H   N L    +   L   VD    ALS    + G
Sbjct: 265 DGGRPAFTLHTPTGCSEVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALS----EAG 320

Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMG 382
           +  R+R  + +     T+++++YNANP SM+AA+  L  +     GRR  AVLG M E+G
Sbjct: 321 QLSRWRMEVTERSDGVTVVNDAYNANPESMRAALRALVAMGAATPGRRTWAVLGQMAELG 380

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLF 436
           E S + H  +  +    N+S +   G    A  D   ++        VH S+    + L 
Sbjct: 381 EESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWLDMGAKNEGSWGEESVHVSDVRAAVDL- 439

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++S L  GDVV+VK+S S G  RL   LL+
Sbjct: 440 LRSELRPGDVVLVKASRSVGLERLAQALLD 469


>gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
 gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
          Length = 447

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 213/438 (48%), Gaps = 19/438 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  IS D+RS+   + + A+KG ++DGH ++  A+ KGAG VVV      ++    +P  
Sbjct: 25  VTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQD----ALPDCPVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + D    L  LA   R R    +IA+TGSVGKT+T+ MLT          A  G++NN 
Sbjct: 81  VLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFKLQPGLLATEGNFNND 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP T  R+       + ELG +   EI +L    RPHI+++   A AH   F G+E +
Sbjct: 141 IGVPKTWFRLTDQHQRVLLELGANAQQEIAWLGSFSRPHISLLLNAAEAHTEGFGGLEGV 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K EI +     G + LN DD  +     ++   G + I +FG+  +AD  L  +K  
Sbjct: 201 RQGKGEIIDATHSEGGVVLNKDDPAYNRWLKQA---GDRKIVTFGRHSDADVCLLSFKNN 257

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S  S   + +    + V    +G HMA N         +         + LS   P+ GR
Sbjct: 258 SHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAAATAWLAGVSALDIAQGLSAMQPEPGR 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +    +++ G   LI ++YNANPAS +AAI VL  +   GE   + + GDM E+G+ S 
Sbjct: 318 MEPVD-SMHGG--ALIHDAYNANPASFRAAIDVLEDL---GE-DTLLIAGDMAELGDESA 370

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H ++  + +   I H+W  G   L + DA       H+ E+++ L   + + L     
Sbjct: 371 NLHREVG-LYARGKIQHIWSVGKESLQISDAFGG----HHFESIEELLAMLPAKLETETA 425

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK S S G  R+++ L
Sbjct: 426 VLVKGSRSSGLERVVDAL 443


>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
 gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
          Length = 476

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 231/485 (47%), Gaps = 49/485 (10%)

Query: 1   MNPLW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P W   +  ++++A+ G+ +   P+      + DSR + P + F+A+KG  +DGHDF+
Sbjct: 1   MAPRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPGDLFWALKGERFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             AV++GA  VVV  +   S+ +   I V  VD+ L AL  LA   R +  A + AITGS
Sbjct: 61  HQAVREGASGVVVQREYTISVENRPEIAVIAVDNTLRALGDLAAWWRRQHTAKLAAITGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM    L    KT    G++NN IG+P+TL ++       + E+GM+H GEI 
Sbjct: 121 SGKTTAKEMTAAILEMENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEMGMNHKGEIA 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----- 231
            LT +  P  A I  +  AHL     ++ +A AK E+         I LN DD+      
Sbjct: 181 RLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNGDDAVLMKHA 240

Query: 232 ---------FELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                    F + K    HA+ I+T       K   F LR W   S+ +W  +QL     
Sbjct: 241 TKFDRKFVTFGMKKGNHIHAVNIET----KGLKGIRFDLR-W---SDDTW-PIQLPVS-- 289

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L    I   L   V+   + L  F   +G   R++C   +G   L
Sbjct: 290 -------GVHNVKNALAAAAIALSLKEPVENIARGLRNFKGVKG---RFQCIPLEGDIIL 339

Query: 342 IDESYNANPASMKAA-ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ID++YNANP++++ A +S L  +    +GR I  LGDM E+GE + S H +    ++   
Sbjct: 340 IDDTYNANPSALETALLSALKMVDR--DGRLIVGLGDMLELGEAAVSAHREAGSRIAESG 397

Query: 401 ISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            S ++  G H   +++      +P S HV  SET D L   I       DV+ +K S   
Sbjct: 398 ASRLFFMGTHGEHVRNGAIAAGMP-SNHVIISETHDELTANIIRKARPKDVIFLKGSRKM 456

Query: 456 GFYRL 460
            F ++
Sbjct: 457 QFEKV 461


>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 460

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 217/398 (54%), Gaps = 46/398 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           + G+ IDS+ I     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 33  MQGVCIDSKKIKEGNLFVPIIRVK-DGHDYVKEAIDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K++++  LS+  + +  
Sbjct: 83  PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKDIISTILSTTHRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258
               EEI+ AK EI +GL++ G +  N D++   LL  K++ L ++   SFG+    D  
Sbjct: 203 LGSREEISKAKLEIIDGLKEEGLLLYNGDET---LLSRKNNVLVLEC-KSFGEKDTNDLF 258

Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               QL ++    K    +   +V L GK   +++  +G  + Q         ++ T  +
Sbjct: 259 PTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-NILNTIVGIAVGQ-------FYNVPTEKI 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A++ +++ H       R++    +  FT+I++++NA+P+SMKAAI  L +++ +   +
Sbjct: 311 QDALRQINITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KK 362

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +I V+GDM E+G+ ++++H ++ ++L+  NIS+V+  G
Sbjct: 363 KIIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYG 400


>gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 451

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 222/449 (49%), Gaps = 34/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKS-KNADFQL 260
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T  +   S  + D   
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTG 264

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKAL 317
             +   +E   + +             +G H  +N  + + +   + +    +   +K +
Sbjct: 265 ISFTINNEHYDLPI-------------LGKHNMKNATIAIAVGHELGLTYNIIYQNLKNV 311

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+       G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD
Sbjct: 312 SL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGD 361

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLF 436
           + E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   
Sbjct: 362 VLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEV 421

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + S L   D V+VK S       ++N L+
Sbjct: 422 LTSDLKAHDRVLVKGSRGMKLEEVVNALI 450


>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
 gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
          Length = 457

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 234/477 (49%), Gaps = 35/477 (7%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            L  F ++++A++G           N IS D+R I     F A+KG +++ +D+I+ A  
Sbjct: 2   ELLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASV 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KG+ L +V+      S  + +  +  V++   AL  LA   R +    +I ITGS GKT+
Sbjct: 62  KGSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++   ALSS  K +   G++NN +G+PL +  +    D  + E+GMS+  EI  L  +
Sbjct: 122 TKDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFDEIHRLAKV 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P IA+IT I  +H+ N    E I  AK EI +   +   + +N ++   + +K+  + 
Sbjct: 182 AKPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKENDLLKTVKSNDYK 241

Query: 242 LGIKTIYSFGKSKNADFQLR---------KWKQC--SEQSWMEVQLQGKSMEVVHHGIGY 290
           L      S G  K+ D+            ++  C   E+    + + GK     H+ +  
Sbjct: 242 L-----MSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGK-----HNILNS 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            +A     TLGI       +   IK LSV         R       G FT++D+SYNA+P
Sbjct: 292 MLAIVAGRTLGIE---YDKLKQGIKNLSV------TSMRLDIVKKDG-FTIVDDSYNASP 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM+AAI V++ I  +   R+IA+LG M E+G+ S  FH ++AE     NI  +   G  
Sbjct: 342 DSMRAAIDVINTIKGN---RKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVGEF 398

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             A K+     I+    +T++    FI ++L   D+++VK+S S  F  ++N L ++
Sbjct: 399 NEAYKEGYNNDINFMAFDTIEDASDFITNNLNKEDIILVKASRSMKFEYIVNKLKDK 455


>gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O46]
          Length = 452

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 218/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +    +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+
Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S L   D V+VK S       ++N L+
Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Lens]
 gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Lens]
          Length = 445

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 214/444 (48%), Gaps = 25/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN      I  + IP F
Sbjct: 20  ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQF 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L AL K+A A R      IIA+TGS GKTT KEM+   L   + ++A  G+ NNH
Sbjct: 76  VVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I+ +
Sbjct: 134 IGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           A +K EI +GL  TG   +N DD+   F++ L A       K I  F     AD   +  
Sbjct: 194 ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIAD------KKILRFSSLHPADIYAQDI 247

Query: 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +     ++   + L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 248 RLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      Q   T+ID++YNAN  S+  A+ VLS       GR+I V GDM E+G
Sbjct: 308 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSGRP----GRKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A       H+  + + L   +++ L 
Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442


>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
 gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
          Length = 457

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 225/457 (49%), Gaps = 52/457 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--------------AGLVVVNTDMV 75
           +  DSR+I P + F A++G  +DGH ++L A+Q G              AG+VV NT + 
Sbjct: 25  VGTDSRNIVPGQLFIALRGERFDGHAYVLQALQSGAAAALVAEAQPGMAAGVVVKNTRL- 83

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--- 132
                             AL +LA   R R    + AITGS GKTT KEM+   L +   
Sbjct: 84  ------------------ALGQLAAVWRNRFSIPVAAITGSNGKTTVKEMVASILRAEAG 125

Query: 133 -IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 A  G+ NN IG+PLTL R+     + + E+GM+H GEIR+L+ + RP +A++  
Sbjct: 126 DSNAVLATRGNLNNDIGLPLTLLRLRPSHKYTVAEMGMNHFGEIRYLSQMARPTVALVNN 185

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              AHL     +E IA AK EIFEGL   G   +N DD +  L    +   G   I +FG
Sbjct: 186 ATSAHLGGLGSVEGIARAKGEIFEGLALEGMAVINADDLYAPLW---TELAGEHDILTFG 242

Query: 252 KSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +K AD     + +  +   +M+  + G +  +   G+  H  +N L    +   + A  
Sbjct: 243 LAKMADVTANYELRADTSYVYMKSPIGGIAFNLQVAGL--HNVRNALAASTVAIAMGARP 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           ++  K L  F   +GR  ++R  + Q    +ID++YNANPASM+AAI VL+   P   G+
Sbjct: 301 ESIAKGLEAFDGVDGR-LQHRAGIGQAL--VIDDTYNANPASMRAAIDVLAA-RP---GK 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           R+ VLGDM E+GE + + H ++ +      I+ ++  G   L +  A     H HY +T 
Sbjct: 354 RLLVLGDMGELGETAAAMHTEIGQYAREAGINGLYTLGDLSLEMSKAFGDPAH-HY-KTP 411

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + L   +   +    VV+VK S      R++ L++ E
Sbjct: 412 EQLVAGLCHEMDANTVVLVKGSRFMRMERVVQLIVSE 448


>gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 453

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 213/447 (47%), Gaps = 26/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR+I     F   KG + DGH F+  A++ GAG      D+  S  ++  P+ 
Sbjct: 26  IQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLS-ENIEGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL  LA A        +IA+TGS GKTTTK+M+   L++  K     G+YNN 
Sbjct: 85  WVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLNTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D D  I E+GMS   EI  L+ +  P IAVIT I  +H+ +    E I
Sbjct: 145 IGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK+EI  GL+  GT   + D+    LLK     +      S G  +           C
Sbjct: 205 AQAKSEITIGLKPNGTFIYDGDEP---LLKPHVEQIQQANCISIGLEQGNSL------VC 255

Query: 267 SEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           S     E+  +G +  + H        +G H  +N  + + I   L    +T    +   
Sbjct: 256 SVNE--EIDTEGIAFTINHQQQYELPILGIHNMKNAAIAIAIGQELGLSYETIQHNIKRV 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R +R+     +   T+I+++YNA+P SMKAAI  LS ++    GR+I VLGD+ E
Sbjct: 314 KLTGMRMERHET---EQQVTVINDAYNASPTSMKAAIDTLSNMN----GRKIIVLGDVLE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQS 439
           +G+ SQS H ++   L    I  +   G     + +   + +   H+    D L   I  
Sbjct: 367 LGDNSQSMHEEVGSYLQNKQIDQLITFGSEATFIYNTGKQYVDEAHHFNDKDKLISHITQ 426

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   D V++K S       +++ L++
Sbjct: 427 IVQPEDKVLIKGSRGMKLEEVVDALIK 453


>gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces albus J1074]
 gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
 gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
          Length = 474

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 214/451 (47%), Gaps = 30/451 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR  AP   F A  G   DGHD+   AV+ GA  V+           + +P   VD
Sbjct: 31  VVIDSRLAAPGSLFAAFAGERADGHDYAATAVETGAVAVLATR-------PVGVPALVVD 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  AL  LA A   R   T++A+TGS GKT+TK+++   L+ +  T    GS NN IG+
Sbjct: 84  DVERALGALARAVVERLGTTVVALTGSAGKTSTKDLVAQLLTRVAPTVWTPGSLNNEIGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT  R   D    + E+G   +G IR+LT L  P I V+  +  AH+  F G E+IA A
Sbjct: 144 PLTALRAEADTRHLVLEMGARGIGHIRYLTGLTPPRIGVVLNVGSAHIGEFGGREQIAQA 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+ E L + G   LN DD +   + +++ A     + +FG++  AD +    +  +E 
Sbjct: 204 KGELVEALPEDGVAILNADDRYVRDMASRTKA----RVVTFGEAPEADIRAENVR-LTEN 258

Query: 270 SWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 L   S   +V     G H   N L    + S L   VD   +ALS         
Sbjct: 259 GRPAFTLHTPSGCGDVTMRLYGEHHVSNALAAAAVASELGMPVDEIAQALSEAESL---- 314

Query: 328 KRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI---AVLGDMCEMG 382
            R+R  + +     T+++++YNANP SM+AA+  L  +     G      AVLG M E+G
Sbjct: 315 SRWRMEVTERPDGVTIVNDAYNANPESMRAALRALVAMGGARRGEGGRTWAVLGQMAELG 374

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLF 436
           + + + H  +  +    N+S +   G        + A  +       VH S+    + L 
Sbjct: 375 DEALTEHDAVGRLAVRLNVSKLVAVGGREAAWLQMGAYNEGSWGEESVHVSDAQAAVDL- 433

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++S L  GDVV+VK+S S G  ++   LL +
Sbjct: 434 LRSELRPGDVVLVKASRSVGLEKVAAALLAD 464


>gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 426

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 216/437 (49%), Gaps = 28/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R +   + FFA+KGP+++G+ F   A++ GA  VVV+   V       +    VD
Sbjct: 16  VTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQDDRYVL----VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L +LA   R      I+AITGS GKTTTKE++   +S   KTYA +G+ NNHIG+
Sbjct: 72  DVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNLNNHIGI 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M   ++FGI E+G +H  EI      V P+  +I  +  AHL  F G E +   
Sbjct: 132 PLTLLAMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLINNVGKAHLEGFGGFEGVKKG 191

Query: 210 KAEIFEGL-EKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L E  G  F+N  ++   E+   ++  L       +G  +N+DF   K+ +  
Sbjct: 192 KGELYQYLFETNGIAFINSKNEHLMEMSPFEAPVL-------YG--RNSDFYNAKFLKSD 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                   + G    V    +G +   N+L  L I          A +A+  + P   R 
Sbjct: 243 PFVAF---IAGNEELVETKLVGDYNFDNILAALCIGKYFGVPSIAANQAIEQYDPTNNRS 299

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N+    +I +SYNANP SM+AAI   + +       ++ +LGDM E+GE S+ 
Sbjct: 300 QIVKTEKNE----VILDSYNANPTSMRAAIENFASLQKE---NKVVILGDMYELGEESEV 352

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H ++  +L+L   + + L G ++ A   A        Y +T +    F+ S+ +    +
Sbjct: 353 EHANIGALLNLLTDTKIILIGKNMAA---ASKECTAAAYMDTKEAAVNFLVSNQILNSTI 409

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S   G   L+ LL
Sbjct: 410 LLKGSRGMGLESLMPLL 426


>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 442

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 183/362 (50%), Gaps = 23/362 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G S+D+R+    + +FA++GP++DGHDFI  AV+K A  +VV        G L +P    
Sbjct: 25  GWSVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVER-AYGVPGELVVP---- 79

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL  L   AR     T+I +TGS GKTTTK+ +   L+S       +G++NNH+G
Sbjct: 80  -DTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAIAHLLASEMPVGKTVGNFNNHVG 138

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL+L R+P     G+ E+GM+H GEIR L  + RP I V+T +  AH+  F  IE IA 
Sbjct: 139 VPLSLLRLPDGCRAGVIEMGMNHSGEIRELGAIARPEIGVVTNVGYAHVEFFDSIEGIAL 198

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+ EGL   G   LN DD       A      I    +FG S++A  ++R     + 
Sbjct: 199 AKRELIEGLTPDGVAVLNADDPRVAGFSAVHPGRSI----TFGLSEHA--EIRAEDVAAH 252

Query: 269 QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 +  G   E    G+ G H   N+L  + + ++          A++ F   + RG
Sbjct: 253 AGGTRFRALGMEFET---GLSGRHAVMNLLAAIAVATVFGIAPARMRDAVASFAAGKMRG 309

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R           + ++ YN+NP + ++ I VL +       RRIAVLG+M E+G  +  
Sbjct: 310 ER----TEHNGIVIWNDCYNSNPEAAQSMIDVLRETPAR---RRIAVLGEMLELGHAADE 362

Query: 388 FH 389
            H
Sbjct: 363 LH 364


>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosomonas eutropha C91]
 gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosomonas eutropha C91]
          Length = 457

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 213/452 (47%), Gaps = 34/452 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR++ P + F A+ G  +DG  FI  A++KGA   +V+TD V            V
Sbjct: 26  GVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMVSTDTVIVPTKSDFGWIKV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSYNN 145
           +D      +LA   R      ++A+TGS GKTT KEM+              A  G+ NN
Sbjct: 86  NDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGNVLATTGNLNN 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP  L ++       + E+GM+H GEI +L+ L  P IAVIT    AH+ +    E 
Sbjct: 146 DIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAVITNAGTAHIEHLGTTEA 205

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EIF GL   G   +N DD++ +L +      G + I  FG +  A  + ++   
Sbjct: 206 IARAKGEIFTGLGAQGIAIINADDAYAQLWR---QLAGSRQILDFGITNPAAIRAQQMSS 262

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            SE +W+ +QL    +E+     G H   N L      +       +  + L  F    G
Sbjct: 263 SSEAAWL-LQLPDDKVEITLQVPGRHNIYNALAAAAAATAAGISTTSIAEGLHNFMGTPG 321

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++ +  L Q    LID++YNANP SM+AA++VL+++     G++I ++GDM E+G  +
Sbjct: 322 RLQK-KVGLYQSI--LIDDTYNANPDSMQAALNVLAEMP----GKKILIMGDMGELGTDA 374

Query: 386 QSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             FH  + +         +L+L  +S   ++GF   A            Y   +D L   
Sbjct: 375 AGFHYTIGQQAAKAGIDALLALGELSQQTVAGFGSGA-----------QYFADLDTLLEK 423

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  L     V+VK S      R+I  L + +
Sbjct: 424 AKDCLGKNVSVLVKGSRFMRMERVIEQLQDRY 455


>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 452

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 218/448 (48%), Gaps = 31/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S P+ 
Sbjct: 26  INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+YNN 
Sbjct: 85  WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    E I
Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           A AK+EI  GL+  GT   + D+        E+  AK  ++G+ T          D  L 
Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +   +  K     H+    +G H  +N  + + +   L    +T  + L 
Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G R      +   T+I+++YNA+P SM+AAI  L  ++    GRRI +LGD+
Sbjct: 311 KVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT----GRRILILGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437
            E+GE S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   +
Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + L   D V+VK S       ++N L+
Sbjct: 424 INDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mollicutes bacterium D7]
 gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. D7]
          Length = 450

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 215/444 (48%), Gaps = 19/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G S DSR       +  I G  YDGHDFI  A   GA  ++  TD +  I      V 
Sbjct: 23  ITGFSQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNGASAII--TDRL--IEDDKHVVI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VD+ L AL K+A   R   K  ++ ITGSVGKT+T++M+   +    KT    G+YNN+
Sbjct: 79  LVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVVKQQYKTLKTEGNYNNN 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R+  D +  I E+GM+HL E+  L+ +  P I+ IT +  AH+      E I
Sbjct: 139 IGLPLTILRLK-DEEVMILEMGMNHLNEMEELSRIACPDISAITNVGTAHIGELGSRENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EI  G+    T+ +N D+     ++  +       +   G    A F+  K    
Sbjct: 198 LKAKLEIVAGMSDGSTLVINGDNDMLSTVRFDNFK-----VVKVGVDCAAVFKAEKVILM 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S   +   GK  +VV    G H   N L+ + I   L   ++  I+ +S F   E  
Sbjct: 253 DDHSEFTINYNGKVYQVVVPVPGNHFVLNALVAIAIGINLEIPMEKCIQGISQF---ELT 309

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            KR      +   TLID +YNA+  SMK++I VL+  S     R+IAVL DM E+GE S+
Sbjct: 310 KKRMDVIELKNNITLIDGTYNASEDSMKSSIDVLATYSR----RKIAVLADMLELGEFSE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             H  + + ++   I  +   G     + D  AL     ++Y      +  +++++L + 
Sbjct: 366 QLHRSVGKYVAEKQIDVLVAVGREAKFMSDSAALSGMAEIYYCNNNQEVVNYLKNNLQND 425

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
           DVV++K SN      ++  + E+F
Sbjct: 426 DVVLLKGSNGMKLKDVVTKIEEKF 449


>gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
 gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
          Length = 462

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 216/431 (50%), Gaps = 20/431 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVF 86
           +  D+R +  +  F  + G + DGH FIL A++ GA   + +    D+   + +   PV 
Sbjct: 30  VDFDTRKLVKESLFVPLIG-NNDGHQFILKAIENGARASLWSKSLKDLPFEVAA-DFPVI 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL  LA     +    ++ ITGS GKTTTK+M    LSS  + +   G++NNH
Sbjct: 88  QVEDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMTDAVLSSQYRVHKTQGNFNNH 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P+T+  MP+D +  I E+GM+H GEI+ L+ L  P +A+IT I  +H+  F     I
Sbjct: 148 IGLPITILEMPIDTEVVILEMGMNHAGEIKVLSDLAEPDVAIITMIGESHIEFFGSRAGI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265
           A AK EI  GL++ G +    ++    LL+ +   L  K + +FG +   D + L    Q
Sbjct: 208 ADAKMEISSGLKENGVLIYPGEEP---LLQERVTFLTDKQLKTFGTAAENDLYPLNIDAQ 264

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++ S+     +   M +    +G +   N L  L    +L   +  +   L+ F   + 
Sbjct: 265 MNQTSF--TTNETPDMTISLPVLGTYNVNNALAALMAGIVLGVPIQKSAPKLAKFQLTKN 322

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   +   +N     +++++YNANP +MKA +   S      EG++I +LGDM E+GE S
Sbjct: 323 R-TEWLVGINGS--RILNDAYNANPTAMKAVLDNFSTF--ENEGKKIVILGDMLELGEHS 377

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSL 441
              H+ + E L+   I  V L G  +  L ++L  +       +++   + L    +  +
Sbjct: 378 SELHLSIKESLNPNQIKKVILYGEEMSVLYESLQETFANDNLFYFTGDKEPLIQLAKEQI 437

Query: 442 VDGDVVVVKSS 452
             GD V++KSS
Sbjct: 438 EPGDYVLIKSS 448


>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
 gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
          Length = 452

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 185/364 (50%), Gaps = 14/364 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+RS++P + F A+ G HYDG+ F+  AV  GA   + +  + A+I     P   VD
Sbjct: 27  VCTDTRSVSPGDLFVALAGDHYDGNQFVSDAVIAGAVAAITSEAVTAAI-----PSVKVD 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL ++A   R R    ++A+TGS GKTTTKEM+   L    +  A   ++NN IGV
Sbjct: 82  DTRFALGQIARLNRRRFSGPVVALTGSAGKTTTKEMVARILCERGEVLATEANFNNEIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +     F + E+G SH+G+I +LT    P IAV+T     H+  F  IE +A  
Sbjct: 142 PLTLLAIDPSHQFAVVEMGASHIGDIAYLTQFAEPTIAVLTNAMAVHIEGFGSIEAVAKT 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EIFE L + G   +N D+ FF+    ++    + T   +  S N  +      Q +  
Sbjct: 202 KGEIFENLPEGGVAIINQDEPFFQQWLQQAGKASVVTFSKYDTSANY-YASNIHIQTNAS 260

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +  E+ L  +++ +    +G H   N +          A VD   K L    P +GR K 
Sbjct: 261 TVFELHLAQQTITIKLALLGEHNVLNAVAAAAAAMTAGATVDDVKKGLESVRPVDGRLK- 319

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A      T+ID++YNA+P S+ AAI VLS  S    GRR  +LG M E+G L++  H
Sbjct: 320 ---ASADSNRTVIDDTYNASPGSVMAAIDVLSGFS----GRRCLILGTMAELGGLAEKSH 372

Query: 390 IDLA 393
            D+A
Sbjct: 373 RDVA 376


>gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Halanaerobium
           praevalens DSM 2228]
          Length = 465

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 190/377 (50%), Gaps = 34/377 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85
           V  I IDSR +     F AI G + DGH ++  AV+ GA  V+V+ +  A   +  ++ V
Sbjct: 26  VKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEAVKNGASAVIVDRNSPAIQAAYPNLSV 85

Query: 86  FGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---G 141
             V+D   AL  +A   R +     +I ITGS GKTTTK+M+    S + + Y C+   G
Sbjct: 86  LKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAGKTTTKDMI---FSVLSEKYYCLKTEG 142

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IG+PLTL R+    DF I E+GMS L EI  L  +  P I +IT IA AHL    
Sbjct: 143 NYNNQIGLPLTLLRLDGREDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLG 202

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E IA AK E+ + L    T  LNYD+ + + +   S A   +TIY FG  K AD ++ 
Sbjct: 203 SLENIAQAKKELIDNLTAADTAILNYDNQYTKKIGTNSKA---QTIY-FGFEKGADARIE 258

Query: 262 KW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALS 318
            +     +E    E   Q K+ + + +  G H   N+L  L I          A K  L 
Sbjct: 259 NYFFNSKTETLKFEFTYQAKNYKFIFNKAGKHNLYNILPALII----------AFKYKLK 308

Query: 319 VFHPKEGRGKRYRCALNQGFFTL------IDESYNANPASMKAAISVLSQISPHGEGRRI 372
               ++G  K    +L   F  L      I++ YNANP S+KAA+ VL QI      R+I
Sbjct: 309 PEEIQKGLLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALDVLEQIKAK---RKI 365

Query: 373 AVLGDMCEMGELSQSFH 389
           A+L  M E+GE S   H
Sbjct: 366 AILASMLELGEKSLKKH 382


>gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
 gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
          Length = 430

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 214/438 (48%), Gaps = 24/438 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R+I P   FFA+KG +++G++F   A+ KGA + +V+ +  A      I    V
Sbjct: 15  GVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDNYI---FV 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L AL +LA   R      ++AITGS GKTTTKE++   L+   KT +  G+ NNHIG
Sbjct: 72  EDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL RM    + G+ E+G +H GEI FLT +  P    IT    AHL  F GIE +  
Sbjct: 132 VPLTLLRMDETTEVGVVEMGANHQGEIEFLTEIALPDYGYITNFGKAHLEGFGGIEGVIK 191

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E++  L+     +FLN DD   +   + SH      +++FG S+ A   +      +
Sbjct: 192 GKSELYTHLKNHKKLLFLNLDDEIQQRQDSYSH------VFTFGSSEKAAVSIDYTISQN 245

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGR 326
              +               G          +T+G+   +    +  AIK  S   P   R
Sbjct: 246 GPEYASFTYNNDVFNTQLTGQYNAYNAAAALTIGLYFKVPFKAIKEAIKEYS---PSNNR 302

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N    TL+ ++YNANP SM ++I   S ++      +  ++GDM E+G+ S+
Sbjct: 303 SQIQKTKNN----TLLLDAYNANPTSMGSSIINFSNLNT--PLSKTLIIGDMLELGQYSK 356

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + E+ +   + +V+L G H    K+      +  +  T + L  F+ ++ ++   
Sbjct: 357 EEHQSIVELCNSKGLKNVYLVGKH---FKETSTPEEYQKFDNTTE-LKTFLTANPINNSY 412

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      ++I  L
Sbjct: 413 ILIKGSRGIALEKIIENL 430


>gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 455

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 219/459 (47%), Gaps = 29/459 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA   +        
Sbjct: 15  SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+   LS     +
Sbjct: 74  --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP+T+  M    +  + E+GM H G++  L+ LVRP + VIT I  AH+
Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDHPGQLHHLSELVRPDVCVITMIGEAHI 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   ++IA AK EI + L++ G    N D+   E   AK             K + + 
Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239

Query: 258 FQLRKWKQ---CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           F  R+       + +S+M     ++ G + +     IG H   N L  + +      + +
Sbjct: 240 FGFREEDTVFATTFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL+ F P   R +  +  + +    ++D+ YN+NP ++KA  +   Q+     GRR
Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVKAVTTSFGQVMVEDGGRR 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426
           IAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       ++H + 
Sbjct: 357 IAVLGDMLELGDESADLHASLATSLDPAIINELYLYGPEMKNLYDALVDKYPAENLHYYP 416

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
 gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
          Length = 449

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 202/399 (50%), Gaps = 23/399 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ G++ DSR +   + F A KG   DGHD++     + A        +V     + I  
Sbjct: 24  YIQGLNFDSRHVQSGDLFVAFKGDKADGHDYV-----EAARARGAVAALVERWVPVEITQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL + A + R  S AT + ITGS GKTT K  +   LS+   T A  G+YNN
Sbjct: 79  IRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKTTVKSTVAHILSAQGATSATQGNYNN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL  +  +  F + E+G    G+I +L  LV P++ ++T + PAH+  F  I+ 
Sbjct: 139 EIGVPLTLLELGPEDQFAVVEMGARFKGDIAYLCALVEPNVRILTAVLPAHMETFGSIDV 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA  K EIF+G++ T    +  D  +    + ++       I +FG S+  D Q+     
Sbjct: 199 IAQTKGEIFDGMKPTDVAVMPGDSPYLSAWQTRAAG----KIVTFGYSEANDIQI---LD 251

Query: 266 CSEQSWMEVQLQGKS----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            S++ +  + L+ ++     EVV   +G H A N+  ++G        +DT +  ++   
Sbjct: 252 VSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAASVGACLACGMSLDTIVAQVASVQ 311

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR  R    +     TL+D+SYNA+P +M+ A++ L + SP   G R+A+LG M E+
Sbjct: 312 AVQGRLARI---ILSDKTTLVDDSYNASPEAMRQALAALER-SP---GARLAILGPMAEL 364

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           G  S  +H  + E     +++ +WLSG     L D+  R
Sbjct: 365 GVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDSRLR 403


>gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 452

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 187/367 (50%), Gaps = 20/367 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG- 87
           G+S DSR++ P + F A+ G  +DGH FI  A++ GA   +V+ D        + P FG 
Sbjct: 24  GVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAILP---TQPDFGW 80

Query: 88  --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             V D    L +LA + R R    ++A+TGS GKTT KEM+         ++   A  G+
Sbjct: 81  IKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFRCEFGLENVLATTGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN IGVP  L ++       + E+GM+H GEI +L+ L  P IAVIT    AH+     
Sbjct: 141 LNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLAAPTIAVITNAGTAHIEYLGT 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA AK EIFEGLE+ G   +N DD    L +      G + +  F  +  A    R+
Sbjct: 201 TEAIARAKGEIFEGLEEQGVAIINADDPHARLWR---QLAGNRPVVDFSMNGTAAVSARQ 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               S   W+ +QL   ++E+     G H   N L      +       +  + L  F  
Sbjct: 258 PAHPSGDRWL-LQLPDDTIEITLQVPGRHNVYNALAAAAAATAAGISTSSIAEGLHSFRG 316

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR ++ +  LN+    LID++YNANP SM+AA++VL+++     G++I ++GDM E+G
Sbjct: 317 VPGRLQK-KTGLNRSV--LIDDTYNANPDSMQAALNVLAEMP----GKKILIIGDMGELG 369

Query: 383 ELSQSFH 389
             + +FH
Sbjct: 370 ADTATFH 376


>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
          Length = 458

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 220/451 (48%), Gaps = 17/451 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLS 82
           + G+S DSR++ P   + A+ G   DGHDF+  A   GA L +V+ D+  S      +  
Sbjct: 12  LTGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAH 71

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  VDDV  A++ LA A R   KA I+ +TGSVGKTTT+ ++   L+S  +     G+
Sbjct: 72  AAVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGN 131

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN +G+P TL +     +  + E+GM  LG+I  L  + RP   VIT +  +HL     
Sbjct: 132 FNNELGMPYTLLQTEPSCEVLVLEMGMDGLGQIADLARIARPKYGVITNVGVSHLERLGT 191

Query: 203 IEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHAL--GIKTIYSFGKSKNADFQ 259
            + IA AKAE+ EGL +  G  FL  D  + + +   + A+  GI+ +   G ++N+D  
Sbjct: 192 RDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIRIVRFDGTAENSDVY 251

Query: 260 LRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   + +    +  +G+S        G H   N      +       +D    ALS
Sbjct: 252 ATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGLEFGIALDQVAAALS 311

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P+ GR    R   ++GF  + D++YNA+P SM AA++VL+  S    GRRIAVLGDM
Sbjct: 312 GVEPESGRQALKRS--SRGFL-VFDDAYNASPESMAAALNVLASFSAS--GRRIAVLGDM 366

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G      HI+  +  +   I  +   G     + DA  +      S           
Sbjct: 367 GELGSAEVEGHINTGKAAAQAGIDMLVCVGAMSRYIADAARKGGMAVKSVIEVADADAAA 426

Query: 439 SSLVD----GDVVVVKSSNSCGFYRLINLLL 465
           ++++D    GDVV+VK+S+  G  R++  ++
Sbjct: 427 TTVLDIAQPGDVVLVKASHFMGLDRVVERVV 457


>gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 236/507 (46%), Gaps = 56/507 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50
           M P+ T   + +A+QG  I  VPQ   G  +G          DSR +     F AI G  
Sbjct: 7   MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 63

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-- 108
            DGHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR  +    
Sbjct: 64  VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRAAGTPF 121

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G
Sbjct: 122 TLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN D
Sbjct: 182 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 241

Query: 229 DS-------------FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           D+              F    A   A       + GKS        +       S+   +
Sbjct: 242 DAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G +  V     G H   N L    +  +L   + +  + LS    ++ R   +R A++
Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 357

Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H 
Sbjct: 358 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHE 417

Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435
            + E  +   I  V   G    H  AL  AL +            +  VH+   +D    
Sbjct: 418 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 477

Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460
            +++   D D  VV++K S++ G   L
Sbjct: 478 LVRALAGDHDDTVVLLKGSHASGLSAL 504


>gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 441

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 236/471 (50%), Gaps = 52/471 (11%)

Query: 9   DLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           D+L A IQG        G V G+S +SR + P + F A+   + DGH +I  A+Q+GA  
Sbjct: 10  DILNADIQG-------SGQVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAA 61

Query: 68  VVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+V+   D+   + ++ +P     D L AL +L    R      ++AITGS GKTTTK+M
Sbjct: 62  VLVDDQHDIPNDVPAVIVP-----DTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKDM 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               ++   KT+    ++NN IGVP+TL  MP D +  + ELGM   G++  L+ LV P 
Sbjct: 117 TAAVMAKRYKTFKTPENFNNEIGVPMTLLTMPADTEVLVVELGMDRPGQLTALSKLVVPD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I  AH+  F    +IA AK EI  GL+  G + + +D+         + A   +
Sbjct: 177 VAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLCIPFDEPLL------TQADVAQ 230

Query: 246 TIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  FG   +A            +++   + L G          GY++  N L  +    
Sbjct: 231 QVVVFGDGVSAVQGDATTTTFTYQETRFAIPLIG----------GYNI-MNALAAVSAGI 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI- 363
           +L  D+D A++AL  F   + R +R   A       LI + YN+NP ++ A ++ L  I 
Sbjct: 280 LLHIDLDDAVEALQTFDLTKNRTERLVTARG---VNLISDVYNSNPTAVAAVLATLKAIP 336

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---- 419
           +PH    +  VLGDM E+GE + + H +LA+ +   N++ V+L G   L   +  P    
Sbjct: 337 APH----KYVVLGDMLELGEQAATLHANLAKEILAANVTGVYLVG--QLFTANTAPILAP 390

Query: 420 --RSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              S H+H  +T  +D L   +++    GDV+++K+S+      ++N L++
Sbjct: 391 HFDSEHLHLYDTHQLDALIADLKTLGDAGDVILLKASHGIHLENVVNALVQ 441


>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 513

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 236/507 (46%), Gaps = 56/507 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50
           M P+ T   + +A+QG  I  VPQ   G  +G          DSR +     F AI G  
Sbjct: 1   MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 57

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-- 108
            DGHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR  +    
Sbjct: 58  VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRAAGTPF 115

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G
Sbjct: 116 TLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN D
Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 235

Query: 229 DS-------------FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           D+              F    A   A       + GKS        +       S+   +
Sbjct: 236 DAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 295

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G +  V     G H   N L    +  +L   + +  + LS    ++ R   +R A++
Sbjct: 296 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 351

Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H 
Sbjct: 352 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHE 411

Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435
            + E  +   I  V   G    H  AL  AL +            +  VH+   +D    
Sbjct: 412 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 471

Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460
            +++   D D  VV++K S++ G   L
Sbjct: 472 LVRALAGDHDDTVVLLKGSHASGLSAL 498


>gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
 gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
          Length = 459

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 199/376 (52%), Gaps = 33/376 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N ++ D+RS+ P + F A++G ++DGH F+  A ++GA   VV+    A    + +P   
Sbjct: 29  NAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDCIDAA----VDLPQLL 84

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L AL +LA   R  S AT+IAITGS GKTT +EM    L  +       G+ NNHI
Sbjct: 85  VSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQQMGPALITQGNLNNHI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +  FG  ELG S L EI +   +V+P +A++T    AHL  F   + I 
Sbjct: 145 GVPLTLFGLAPEHRFGAIELGASGLNEIAYTVAMVKPQVAILTNAGQAHLEGFGSYQNIV 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI +G+   G + LN DD  F+    ++    + ++   G +  AD+++       
Sbjct: 205 LAKGEIIDGVADDGLVVLNRDDPAFDQWLVRAGRRRVASVSRAGHA-GADYKV------I 257

Query: 268 EQSWMEVQLQGKSMEVVHHGIGY---HMAQNMLMTLGIVSILTADVDTAIKA-----LSV 319
             +  +VQ+ G    +    +G    H   N  M       L A  +  IKA     L+V
Sbjct: 258 AGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELGA-TNEHIKAGLEQVLAV 316

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDM 378
                 +G+ +   L QG +TLID+SYNANPAS+KAA++VL++  SP     RIAVLG M
Sbjct: 317 ------KGRLHIQPLAQG-WTLIDDSYNANPASIKAALAVLAKRPSP-----RIAVLGAM 364

Query: 379 CEMGELSQSFHIDLAE 394
            E+GE +   H ++A+
Sbjct: 365 AELGEQAAQLHREVAQ 380


>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
          Length = 459

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 234/470 (49%), Gaps = 20/470 (4%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P +T  ++ +A       +  + F + I  D+R I P   F A KG  ++G DF+  AV+
Sbjct: 2   PAFTLDEVREATGAQLYKMEHEEFTD-IVTDTRKITPGVLFLAFKGERFNGEDFVRDAVE 60

Query: 63  KGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KGA  V+V+T    A +  L   V   +D L A  +LA A R+R    ++AITGS GKTT
Sbjct: 61  KGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++    LS+         +YNN IG+PLTL  +  +    + E+GM  L +I  +  +
Sbjct: 121 TKDLTAAVLSARGPVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEAMAPI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P + ++T +   H+     IE IA AK+E+ E +   GT+ LN D+ +   +++++  
Sbjct: 181 AAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAMRSQARE 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE-----QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            G++ + +FG  K AD  +R  ++  E     ++  +++ +G+        +G H   N 
Sbjct: 241 -GVR-VLTFGIEKEAD--VRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHNVYNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +     L     T  +A S     +    R+    +   + +I+++YNA+P SMKAA
Sbjct: 297 LAAIAAGFALGL---TPAEAASGLRNLKATKMRFEVQ-DVKTYHVINDAYNASPMSMKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  LS+++   +GR+IAV+GDM E+G +S+  H ++   L+ +  + V   G     + D
Sbjct: 353 IETLSELT---KGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVTRGQMGAFIAD 409

Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    V  +++ +    ++   L  GD ++ K S      ++I+LL
Sbjct: 410 GAEEGGVPQVFRADSHEAAADYLHKILEPGDTILFKGSRGMQMEKIIDLL 459


>gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
 gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
          Length = 458

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 220/441 (49%), Gaps = 23/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R+I   + F A+KGP++DGH+++  A +KGA   +V T       +L +P + V 
Sbjct: 30  INTDTRAINHGDVFIALKGPNFDGHNYLDVATRKGAAAAIVETPNT----NLDLPQWCVG 85

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +L +A+R +    +I +TGS GKTT K ML    S    T A  G+ NNHIGV
Sbjct: 86  DSYKALGELGLASREKFNGKVIGVTGSCGKTTVKGMLAAICSLAGSTVATRGNLNNHIGV 145

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL+L R+  +  F + E G S   EI++L  L++PH+A++  I P H+  F  +E IA  
Sbjct: 146 PLSLMRLANEHQFAVIEAGTSGPNEIKYLAELIQPHVAIVNNIMPVHVEGFGSVEAIAID 205

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQC 266
           KA ++ GL + G   LN   +    L     AL  K I  F      + A+ +++  +Q 
Sbjct: 206 KAHLYRGLVEGGVGVLNVASAQQPTL---LDALQGKKITRFNPELTDEAAEVRVQNIEQD 262

Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +  ++     ++G+ +E+    +G H   N L        +   V+   + L  +   +G
Sbjct: 263 TFGRAEFSAIIEGEEVELKLGVLGAHNVANALAAASAARAVGISVELIKRGLEKYTGDKG 322

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R  +N+   T+ID++YNA+P S+KAAI   +Q       R   VLGDM E+GE+ 
Sbjct: 323 RMQLAR--VNEK-LTVIDDTYNASPGSVKAAIDYAAQFE-----RSAIVLGDMGELGEMR 374

Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            S H ++        I  +W +G       +   P +      E +      + SS V  
Sbjct: 375 NSAHEEIGRYAQQKQIKQLWCTGEASRFTAQGYGPHAKWFEDKEQLKQALPMLCSSEV-- 432

Query: 445 DVVVVKSSNSCGFYRLINLLL 465
            VV+VK S S    +++N LL
Sbjct: 433 -VVLVKGSRSTRMEQIVNALL 452


>gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 455

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 26/374 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+SIDSR+I   + F A+ GP +DGHD++     KGA   +V  ++  S    ++P   
Sbjct: 26  DGVSIDSRAIKAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVADS----TLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL +L    R      + A+TGS GKTT KEML   L +    +A  G+ NN +
Sbjct: 82  VKDTRQALGQLGALNRAAFTKPVAAVTGSSGKTTVKEMLASILRTRGSVHATRGNLNNDL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +    + ELG S LGEI +   L +PH+A++     AH+  F G E+I 
Sbjct: 142 GVPLTLLELAPEHSAAVIELGASRLGEIAYTVGLTKPHVAILNNAGTAHVGEFGGPEKIV 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI EGL   G   LN DD  F + K +  A G K +     +  ADF         
Sbjct: 202 EAKGEIIEGLAADGVAVLNLDDKAFGIWKTR--AAGRKVLTFALSNTQADFH-------- 251

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             S +    +G     +H   G    Q N+L T  + + + A        +S+F    G 
Sbjct: 252 -ASDLATDARGCPAFNLHSPEGVERVQLNLLGTHNVANAMAAAAAAHALGVSLFGIATGL 310

Query: 327 GK------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           G       R    L +    +ID++YNANP SM AA+ +L+  S    GR + VLGD+ E
Sbjct: 311 GAVQPVKGRTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGFS----GRTVLVLGDIGE 366

Query: 381 MGELSQSFHIDLAE 394
           +G+ ++  H D+ E
Sbjct: 367 LGDWAEQGHRDVGE 380


>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
 gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
          Length = 466

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 195/372 (52%), Gaps = 22/372 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR++   E F A+ G  +DG  F+ +A +KGA   ++  D   +  S   PV  V
Sbjct: 24  GVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQKDAEPAGLSGDFPVIRV 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM----LTIALSS-------IKKTY 137
            D    L +LA   R R    +I +TGS GKTTTKEM    L +A S         ++  
Sbjct: 84  QDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIAAILRVAASDNAIINDPAERVL 143

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+ NN IGVP  L R+     + + E+GM+HLGEI +LT L RP+IAVIT    AH+
Sbjct: 144 ATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLARPNIAVITNAGAAHI 203

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E +A AKAEI  GL+++GT   N DD +  L +      G + I  FG ++ A 
Sbjct: 204 EGLGSVEAVARAKAEILVGLDQSGTAIFNADDRYASLWR---ECAGAREIIDFGLTEKAR 260

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                ++     + ++++L   ++EV     G H   N L    +   L    +  +  L
Sbjct: 261 VSA-VYRLGRLVNTLQLRLPDATVEVKLQAPGVHNIYNALAAAAVAWSLGIKKEWIVAGL 319

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F    GR ++ +C L+     LID++YNANP S++AA++VL+      EG++I VLGD
Sbjct: 320 ERFQSVHGRLQK-KCGLHHA--VLIDDTYNANPESVRAALAVLAAA----EGKKILVLGD 372

Query: 378 MCEMGELSQSFH 389
           M E+G+L+   H
Sbjct: 373 MGELGQLAIDLH 384


>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
 gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
          Length = 519

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 237/507 (46%), Gaps = 56/507 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50
           M P+ T   + +A+QG  I  VPQ   G  +G          DSR +     F AI G  
Sbjct: 7   MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 63

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKA 108
            DGHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR  + +  
Sbjct: 64  VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRTVGTPF 121

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G
Sbjct: 122 TLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN D
Sbjct: 182 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 241

Query: 229 DSFFELLK-------------AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           D+    +              A   A       + GKS        +       S+   +
Sbjct: 242 DAHVATMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G +  V     G H   N L    +  +L   + +  + LS    ++ R   +R A++
Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 357

Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H 
Sbjct: 358 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHE 417

Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435
            + E  +   I  V   G    H  AL  AL +            +  VH+   +D    
Sbjct: 418 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 477

Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460
            +++   D D  VV++K S++ G   L
Sbjct: 478 LVRALAGDHDDTVVLLKGSHASGLSAL 504


>gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 451

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 213/441 (48%), Gaps = 17/441 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+SIDSR I     F   KG + DGH FI  A+  GAG V    +   S G+   P+ 
Sbjct: 26  INGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKHSEGNQG-PII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   LS+  K     G+YNN 
Sbjct: 85  WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P IAVIT I  +H+ +    E I
Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+    LLK   + +    + S G + ++ +        
Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVK 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +E     +       E  H  I G H  +N  + + I   L  +       +        
Sbjct: 262 NEG----IHFTINQKEHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R+  + N    T+I+++YNA+P SMKAAI  LS +    +GR+I +L D+ E+G  S
Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444
           Q  H  + E L   NI  ++  G     + D+    +    Y +  D L   + S +   
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPE 430

Query: 445 DVVVVKSSNSCGFYRLINLLL 465
           D V+VK S       +++ LL
Sbjct: 431 DKVLVKGSRGMKLEEIVDALL 451


>gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 469

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 217/465 (46%), Gaps = 41/465 (8%)

Query: 23  PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V   ++ DSR   P   F A+ G   DGHD+ L AV+ GA  V+           +
Sbjct: 23  PEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYALSAVKAGAAAVLATR-------PV 75

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P   VDDVL A  +L   + A       I+AITGS GKT+TK+++   L +  +  A 
Sbjct: 76  GVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITGSAGKTSTKDLIAQLLPAAGRVVAT 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             S+NN IG+PLT++      D+ + E+G   +G IR LT +  PHI+V+T +  AH+  
Sbjct: 136 PESFNNEIGLPLTISMADPSTDYLVLEMGARGIGHIRDLTRIAPPHISVVTNVGTAHIGE 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-- 257
           F G ++IA AK EI E L  +G   LN DD     + A++ A     + SFG S  A   
Sbjct: 196 FGGRDKIAVAKGEIVEALPASGLAVLNADDPLVLAMAARTTA----RVSSFGLSDEATVR 251

Query: 258 --------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                   F    +   + +    V LQ      V + +    A      L +  I  AD
Sbjct: 252 ATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSNSL-AAAAVAREAGLSVADI--AD 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           + +A  A S +        R   +      T+++++YNANP SM++++  L+ ++   E 
Sbjct: 309 LLSAATARSRW--------RMEVSARADGVTVVNDAYNANPDSMRSSLEALATMARGPEQ 360

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHV 424
           R IAVLG M E+G  S++ H  +  + +  ++  +       +G+   A   A      V
Sbjct: 361 RAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIVFVGGEEAGWMRQAAAAAGAGGRAV 420

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           H  +  D     +  +L  GDVV+VK+S      RL   LL+  P
Sbjct: 421 HVPD-QDAALQHLSDTLRAGDVVLVKASRGIQLQRLAERLLQPDP 464


>gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
 gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
          Length = 470

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 212/453 (46%), Gaps = 20/453 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           PQ  +N +S D+R       F A+KG  +D HDFI  A+ +GA  V+    +        
Sbjct: 23  PQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPL-----DEQ 77

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P   V+D   AL  L  A +       IAITGS GKTT KEML   +       A  G+
Sbjct: 78  TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAIIGQQYNVLATAGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     + + ELG +H GEI + T L RP +A++  ++ AH+  F  
Sbjct: 138 FNNDIGVPLTLLRLEAQHQYAVVELGANHAGEIAYTTSLTRPDVAILNNVSAAHVEGFGS 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +  +A AK EIF+GL + G     Y+  +    +   +    K + +FG S+ AD +  +
Sbjct: 198 VHGVAKAKTEIFQGLPEDGLAITPYESEYLPCWR---NVRAGKRLQTFGLSEQADVRASQ 254

Query: 263 WKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +  S  Q   ++ +  +   V     G H  +N L        +    +     L+   
Sbjct: 255 IELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALAASAAALEVGMSAEEIATGLANVA 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR    +   N    T+ID++YNA+ AS KAA+ +L       +G  I VLGDM E+
Sbjct: 315 PVKGRLTPMQLTEN---VTVIDDTYNASVASTKAALDLLGSY----QGTTIMVLGDMAEL 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE---TMDGLFLFI- 437
           G  ++++H D+ +      IS  +  G    +  +        H+S     +D +   I 
Sbjct: 368 GAEARAYHEDVGDHAIQAGISKFFTLGVLSQSASEVFNGRGGKHFSSFATLVDEILQTIT 427

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           Q S+ +   V+VK S S    R++N L E + +
Sbjct: 428 QRSVSEHVTVLVKGSRSSHMERVVNALQEHYKS 460


>gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 433

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 213/423 (50%), Gaps = 28/423 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL + ++G  + I     V   +IDSRS      F  +KG + DGH +I  A++K +   
Sbjct: 5   DLAKVVEGKILNIEEDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYIEDALKKWSVGY 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +    +    G L      V D   AL K+A+  R +S  T++ ITGS GKT+TKE+L  
Sbjct: 64  LTEKPLNFKNGIL------VKDTYQALKKIAIYKR-KSIDTVVGITGSSGKTSTKELLNF 116

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS+  KTYA  G+YNN IGVPLTLA  P +    I E+G   +G+I +L ++V P I V
Sbjct: 117 VLSNFYKTYATSGNYNNEIGVPLTLANTPENTHIAIIEMGAGKVGDIDYLNNIVNPDIGV 176

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           + ++  AH+  F   E I   K EIF           +Y    F+LL      L  K   
Sbjct: 177 LVSVGHAHVEKFGSFENIIKGKGEIFNT--------SHYHVLPFDLLNYYKDKL--KKFI 226

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG+  N   ++   K   E +  +V  + + +++        + +N+    G++  L  
Sbjct: 227 TFGEEGN--IKVYDIKIIPEGTTGKVAYKNQVLDLTIPIFNKGIFKNIGAVAGVLYHLGL 284

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D   ++K L  F+  +GRGK  +     G  T+ID+SYNANP S+K AI  L++I     
Sbjct: 285 DPIESLKVLKEFNQIQGRGKIIKI----GNLTIIDDSYNANPLSVKNAIETLNEIPT--- 337

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
             ++ VLGDM E+GE S+  H  +A+ +   +I +V+L G     +K  L    +V +++
Sbjct: 338 -VKVLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFLYGEETKYIKQELEGKKYVLHTD 396

Query: 429 TMD 431
             +
Sbjct: 397 KKE 399


>gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 460

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 24/370 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R++   E F A+KGP++DGH FI  A QKGA  V+V   +      + IP F V 
Sbjct: 27  INTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVQHKV-----DVDIPQFIVS 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  +  A   +     IAITGSVGKTT KEM    LS      A  G++NN IGV
Sbjct: 82  DTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     F + ELG +HLGEI + T + +P +AV+  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLEPQHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265
           K EIF+GL+  G   +N D  F +    K     +K    F  ++  D     W +    
Sbjct: 202 KGEIFDGLKDDGVAIVNCDSEFSQYWLDKLEGRNVK---CFSTTEKLDI----WAENITL 254

Query: 266 -CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + ++   +  + K + V     G H   N L+   + S     ++    AL+     +
Sbjct: 255 DANARASFTLCTKNKQVPVTLALPGKHNISNALIAAALTSEFDVTLEEIANALATMGDVK 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR      +      T++D++YNAN  S+KAAI +LS +    +G RI  LGDM E+GE 
Sbjct: 315 GRVNLIEVS---DLLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGELGED 367

Query: 385 SQSFHIDLAE 394
           ++ +H ++ E
Sbjct: 368 ARKYHQEVGE 377


>gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 442

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 226/447 (50%), Gaps = 32/447 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+S DSR +   + F A+   + DGHD++  A+ KGA  V+V  D    I S  IP 
Sbjct: 22  IVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLV--DDRHQIDS-KIPA 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L AL +L    R +    ++AITGS GKTTTK+M +  + S  KT+    ++NN
Sbjct: 78  IIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMASAIMGSQYKTFKTPENFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL  MP D +  + ELGM  LG++  L+ LV P IA+IT I  AH+  F   E 
Sbjct: 138 EIGVPLTLLTMPDDTEVLVVELGMDRLGQLTTLSELVSPDIAIITMIGEAHIEFFKTREN 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI +GL+  GT+ + YD+      + K      + + +FG+       ++    
Sbjct: 198 IAKAKLEITKGLKSQGTLLIPYDEPLLTNAQVK------QNVQTFGQD------IKDINS 245

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S ++    Q    ++ +    +G +   N L  +    +L  ++  A +AL  F   + 
Sbjct: 246 SSSKTIFTYQNTRFAIPL----LGRYNIMNALAAISAGILLHIELKNAAEALQHFDLTKN 301

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++   +       LI + YN+NP ++ A ++ L +I P     +  VLGDM E+GE +
Sbjct: 302 RTEQLTTSHG---VNLISDVYNSNPTAVAAVLATL-KIIP--ATHKYVVLGDMLELGEQA 355

Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPR---SIHVHYSET--MDGLFLFIQS 439
              H  LAE +   N+  V+L G      L   L R   S H+H  ET  +  L   +Q+
Sbjct: 356 ARLHACLAETVINANVDGVYLVGPLMNKYLYPILQRRFDSAHLHQYETDQLAELIKDLQT 415

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +GDV+++K+S+      ++N L++
Sbjct: 416 LGENGDVILLKASHGIHLENVVNALVK 442


>gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
 gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
          Length = 467

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 222/446 (49%), Gaps = 19/446 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  D+R + P   F  + G   DGH +I  A+  GA   + + D  A   S  + V 
Sbjct: 27  ITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSAD-PAQAPSDDLAVV 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL  LA   R      ++ +TGS GKTTTK+M  + L +  + +   G+YNN 
Sbjct: 86  FVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHKTQGNYNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL +MP D    + E+GMS  GEI+ L+ + +P IA IT I  +HL        I
Sbjct: 146 IGLPYTLLQMPEDTQVAVIEMGMSDFGEIKQLSEIAQPDIAAITLIGESHLEFLGSRAGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIY--SFGKSKNADFQLRKW 263
           A AK EI  GL+  G +    ++   E     S    I + IY  SFG + +AD      
Sbjct: 206 AQAKLEILYGLKPNGVLLYPANEPLIE-----SEMPEIDQPIYLRSFGFTDHADAFAYDM 260

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +  ++++ +  L+  ++      +G +   N L+ L +  +L   ++ AI  L+ F   
Sbjct: 261 VEEVDRTYFKTNLE-PNVTCTIPVLGAYNVSNALIALSVAELLDVPLEQAIFQLANFQLT 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +      +QG   L++++YNA+P S+ A +  L+ ++     RRIAVLGD+ E+GE
Sbjct: 320 ANRLE--WLTTHQG-ARLLNDAYNASPTSVLAVLKSLAALNLAPGQRRIAVLGDVRELGE 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSETMD--GLFLFIQ 438
            S   H  LA+ L+  +   V+L G  + +L + L     + H+ Y E  D   L   +Q
Sbjct: 377 ASAQLHRSLAQGLAPESFERVYLFGPEIASLYETLQDRYEASHLFY-EPADHSRLIAQLQ 435

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L D D+V+VKSS      +++  L
Sbjct: 436 ADLTDKDLVLVKSSFGTDLLQVVTAL 461


>gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 441

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 229/452 (50%), Gaps = 38/452 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            G + G++ +S+ +   + F A+   + DGH++I +A+  GA  V+V+   V +     I
Sbjct: 19  NGLITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKHVINT---KI 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   VDD L AL +L    R +   TIIAITGS GKTTTK+ML   +++  +T+    ++
Sbjct: 75  PAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPENF 134

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  MP + +  + ELGM   G++  L+ LVRP +A+IT I  AH+  F   
Sbjct: 135 NNEIGVPMTLLMMPENTEVLVVELGMDRPGQLTVLSRLVRPDVAMITMIGEAHIEFFKTR 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA AK EI  GL+  G +F+ +D+         + A+  + +  FG+  N        
Sbjct: 195 ANIARAKLEIVSGLKSDGVLFIPFDEPLL------TEAIVQRQVILFGQGVN------NI 242

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  S+ +    Q    ++ ++    GY++  N L  +    +L  D+    KAL  F   
Sbjct: 243 EAFSDHTMFVYQNTQFAIPLIG---GYNI-MNALAAISAGILLHIDLKKVAKALQTFDLT 298

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMG 382
           + R +R   A       LI + YN+NP ++ A ++ L  I +PH    +  VLGDM E+G
Sbjct: 299 KNRTERLVTARG---VVLISDVYNSNPTAVAAVLATLKAIPAPH----KYVVLGDMLELG 351

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--------RSIHVHYSETMDGLF 434
           + +   H +L + +    +  V+L G   L  K+  P           H + ++ +D L 
Sbjct: 352 DQANKLHANLGQKVLDSGVDGVYLVG--PLLNKNMAPIIQAHIDSVDFHQYATDQLDQLR 409

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L +Q+    GDV+++K+S+      ++N L++
Sbjct: 410 LDLQTLGEKGDVILLKASHGIHLETVVNALMK 441


>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
           [Bifidobacterium bifidum PRL2010]
 gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 513

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 237/507 (46%), Gaps = 56/507 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50
           M P+ T   + +A+QG  I  VPQ   G  +G          DSR +     F AI G  
Sbjct: 1   MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 57

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKA 108
            DGHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR  + +  
Sbjct: 58  VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRAVGTPF 115

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G
Sbjct: 116 TLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN D
Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 235

Query: 229 DS-------------FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           D+              F    A   A       + GKS        +       S+   +
Sbjct: 236 DAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 295

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G +  V     G H   N L    +  +L   + +  + LS    ++ R   +R A++
Sbjct: 296 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 351

Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H 
Sbjct: 352 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHE 411

Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435
            + E  +   I  V   G    H  AL  AL +            +  VH+   +D    
Sbjct: 412 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 471

Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460
            +++   D D  VV++K S++ G   L
Sbjct: 472 LVRALAGDHDDTVVLLKGSHASGLSAL 498


>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
             G  ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +      P+
Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPK 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V   ++ + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 415 D-RVKAYDSKEELIKELQAVVDAKDVVLVKASRGMKLEEVITML 457


>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 451

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 213/441 (48%), Gaps = 17/441 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+SIDSR I     F   KG + DGH FI  A+  GAG V    +   S G+   P+ 
Sbjct: 26  INGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKHSEGNQG-PII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   LS+  K     G+YNN 
Sbjct: 85  WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P IAVIT I  +H+ +    E I
Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+    LLK   + +    + S G + ++ +        
Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVK 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +E     +       E  H  I G H  +N  + + I   L  +       +        
Sbjct: 262 NEG----IHFTINQKEHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R+  + N    T+I+++YNA+P SMKAAI  LS +    +GR+I +L D+ E+G  S
Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444
           Q  H  + E L   NI  ++  G     + D+    +    Y +  D L   + S +   
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPE 430

Query: 445 DVVVVKSSNSCGFYRLINLLL 465
           D V+VK S       +++ LL
Sbjct: 431 DKVLVKGSRGMKLEEVVDALL 451


>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
 gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
          Length = 458

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 227/464 (48%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        S  +  ++  + ++       +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQSTGTHFKMN-RDETSSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLG 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
             G  ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +      P+
Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V   ++ + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457


>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
 gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 235/471 (49%), Gaps = 33/471 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A QG  I    +  + GIS DSR +   E F  +KG  YDG DF+  A+ KGA  V
Sbjct: 8   EIVRATQGKLIKGSLKDKIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAV 67

Query: 69  VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    D +  +      +  V+D L AL+K+A   R +     +A+TGS GKTTTK+M+ 
Sbjct: 68  LTARLDNIEYLKDFPFNIIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGKTTTKDMIA 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L ++V+P +A
Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLKNIVKPQVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------AKSHA 241
           V T I  AH+      E I  AK E+ E  ++   I LN DD    LLK      +K + 
Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDM--LLKILQQYSSKYYR 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMT 299
            GIK+    G+ K  D +         +  +E  L+ K++E  +   I G H   N L  
Sbjct: 246 YGIKS----GEIKACDIE-------KGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      DVD   +AL  F P    GK     + +G   +ID++YNANP SMKAA++V
Sbjct: 295 ICVGLEFGVDVDDMAEALKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
           L         R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG    +     K
Sbjct: 351 LRDFPGK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNTSKYIAEESK 407

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +  ++    T + +   ++  + +GD+++VK S      +++  L E
Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQE 458


>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
 gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
          Length = 460

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 14/384 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S D+R+I     +  + G  ++GH F+  A QKGA  V+            S+P  
Sbjct: 27  VSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWAE--AEGTPPESVPAI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA   R +    ++ +TGS GKTTTK+M+   LSS  +     G+ NNH
Sbjct: 85  VVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIAALLSSQYRVQKTEGNLNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +    D  + E+GMS  GEI  LT + RP+ AVIT I  AHL      E I
Sbjct: 145 IGVPLTLLALEEGTDIAVVEMGMSGFGEIEQLTTIARPNAAVITNIGEAHLQELGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK- 264
           A AK EI  GL+  G    + D+    EL+ +       + + +FG+ ++ D+     + 
Sbjct: 205 AKAKLEILSGLQGDGLFVYHGDEPLLAELVPSLPLP---QHVVTFGEGEDNDYYPTTVRI 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + +  S++  +L  +++ +    +G H   N L  + +        +    ALS      
Sbjct: 262 EAAGTSFVINELPRQTLFIPV--LGKHHVYNALAAIAVARFFGVSWENIAAALSRLQVTR 319

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +       FT+I+++YNA+P SM+AA+ +L+++   G  ++IAVLGDM E+G+ 
Sbjct: 320 MRTEVVKTKRG---FTVINDAYNASPTSMRAALMLLTELD--GYRKKIAVLGDMLELGDK 374

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408
              FH  + E+L    + +V+  G
Sbjct: 375 EVEFHQAIGEMLRPEMVDYVFTYG 398


>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
 gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
          Length = 458

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 222/446 (49%), Gaps = 27/446 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S D+R+I     +  ++G  ++GHDF+  AVQKGA  V+             +PV 
Sbjct: 27  VSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKGAAAVLWAER--EGTPPEGVPVV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA   R +    +I +TGS GKTTTK+M+   LS+  +     G+ NNH
Sbjct: 85  VVDDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTKDMIAALLSTHYRVQKTEGNLNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +    +  + E+GMS  GEI  LT + RP  AVIT I  AHL      E I
Sbjct: 145 IGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWK- 264
           A AK EI  GL   G +F+ + D    LL  +   L + + + +FG  +  D+     + 
Sbjct: 205 AKAKLEILAGLHHDG-LFVYHGDE--PLLTERVPKLPLPRHVVTFGAGEQNDYYPTDVRI 261

Query: 265 QCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSV 319
           +    S++   L G++  M V    +G H   N L  + +      D   +D ++  L V
Sbjct: 262 EAGGTSFVINALPGRTLFMPV----LGKHYVYNALAAIAVARFFGIDWEGIDASLSRLQV 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R      +  FT+I+++YNA+P SM+AA+ +L ++S  G  ++IAVLGDM 
Sbjct: 318 TR------MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQELS--GYRQKIAVLGDML 369

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLF 436
           E+G+   +FH ++ EVL    + +V+  G    H+ A          V   +    L   
Sbjct: 370 ELGDEEVAFHREIGEVLRPGMVDYVFTYGPLSHHIAAAAAPFFDDGRVREFDDKAALAEA 429

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++S     D+V++K+S       L+ 
Sbjct: 430 VRSVATSDDIVLLKASRGMKLEELLR 455


>gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
 gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
          Length = 452

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 220/452 (48%), Gaps = 35/452 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G  ID+R++   + FFA+ G   DGH+F+  A + GA   VV       +  + +P  
Sbjct: 24  VKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGASAAVVER----YLEDVDLPQC 79

Query: 87  GVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V D   AL  LA   R +   T  +A+TGS GKTT KEML   LS++  T A  G++NN
Sbjct: 80  VVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEMLKQILSAVGSTCATQGNFNN 139

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G+PLTL R+  +  F + E+G S  GEI +LT + +P +A++    PAHL  F  I  
Sbjct: 140 DLGLPLTLLRVGREHQFAVLEMGASQFGEIEYLTQVAKPDVALVNNAGPAHLDGFKDISG 199

Query: 206 IASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +A  K EI+ GL + G   +N DD    ++  L A       KT+ SFG   +AD Q  +
Sbjct: 200 VARGKGEIYNGLGEKGIAIINADDIHADYWRSLCAD------KTVVSFGLENSADVQ-GQ 252

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           W   S+   + +Q+ G  ++     I     G H A+N +    +      D+D   K L
Sbjct: 253 W--SSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAAAVALAAGVDLDAVEKGL 310

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV-LSQISPHGEGRRIAVLG 376
           S   P  G   R      +G F LID++YNANPAS+ A I V L    P         LG
Sbjct: 311 SKVRPVAG---RMVPMTARGGFYLIDDTYNANPASLMAGIDVALDMQRPV-----WLALG 362

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL 435
           D+ E+G+ S++ H  L E +    +  ++  G      K+A  R        ++ + L  
Sbjct: 363 DLAELGDNSETVHAQLGEQVQQRGVQRLFTLGEQS---KNAAERFGEGAAAFDSPEALAQ 419

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            I++      V++VK S S    R++ LL EE
Sbjct: 420 QIETLATRDVVLLVKGSRSSRMERVVRLLSEE 451


>gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 468

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 224/453 (49%), Gaps = 29/453 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G++ DSR +   + F  + G + DGH +I  A++ GA   +  +D    +    
Sbjct: 28  PDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGAVATLWASDHADDVPE-D 85

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYAC 139
           +PV  V D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KT+A 
Sbjct: 86  LPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVLSTQFNVTKTHA- 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+P +AVIT I  AH+  
Sbjct: 145 --NFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEF 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   + IA AK EI  GL++ GT   N D+   +  +AK  +   +T   FG        
Sbjct: 203 FGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQ-ERAKEVSQHQRT---FGLDDTNTLA 258

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                    Q+  +  L   +   +   +G +   N L  L +          A +A++ 
Sbjct: 259 GSDITTSRAQTQFKTSLWPDNTYTIPM-MGAYNVNNALAALLVADTFHIRPAAAQQAIAS 317

Query: 320 FHPKEGRGKR---YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           F P E R +    YR         ++ + YN+NP + +  ++  + +    +G+RIAVLG
Sbjct: 318 FVPTENRTEWLTGYRGE------AILSDVYNSNPTAARRVLAAFAAVP--TKGQRIAVLG 369

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431
           DM E+GE S + H+ LA  L    I+ V+L+G H+ AL + L       ++H + ++   
Sbjct: 370 DMLELGEQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQP 429

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            L   + +++   D V++K S+     +++  L
Sbjct: 430 QLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 462


>gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
 gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
          Length = 468

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 200/432 (46%), Gaps = 42/432 (9%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W    L QA QG+      P+G +  I  DSR     +AF A+KG  +D HDF+   VQ+
Sbjct: 14  WDASQLQQATQGYWHNNRQPEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +   I  L      V D   AL  L    R +  K  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVEQPLDVDIFQLI-----VSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELRPEHQYAVMELGASHQGEIDYTSKLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI++ +   GT  L  DD F + +K    A+
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYQHIAVDGTAILPADDDFTDQIK---QAI 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYH 291
             + + SFG             Q  E     V L  +S E   H             G H
Sbjct: 246 QTQKMLSFG-------------QDGEIYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEH 292

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             QN L        +  D++  ++ LS     +GR       +  G    ID++YNANP 
Sbjct: 293 NVQNALAATAFALAIGIDLNNIVQGLSAAQGAKGR----LNFIQHGHHLFIDDTYNANPG 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+AA  VL+Q +    G ++ V GD+ E+G+ S   H  L   L+   + ++   G   
Sbjct: 349 SMRAAAGVLAQQT----GIKVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIVAVGEFA 404

Query: 412 LALKDALPRSIH 423
            A++     S H
Sbjct: 405 GAMQQGAASSDH 416


>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
 gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
          Length = 458

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
             G  ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +      P+
Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V   ++ + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457


>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 458

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
             G  ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +      P+
Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V   ++ + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457


>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           coahuilensis m4-4]
          Length = 456

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/447 (31%), Positives = 215/447 (48%), Gaps = 21/447 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+G+ ID+R +     F   KG + DGH F+   ++KGAG      +  A      +PV
Sbjct: 26  LVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKGAGAAF--WEKSAGPAPEGLPV 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL  L+ A R      ++ +TGS GKTTTK++L   LS+  + +   G+YNN
Sbjct: 84  IVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDILFALLSTKYRVHKTEGNYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  +P D +  + E+GMS  GEIR LT +  P  A+IT I  +HL +    E 
Sbjct: 144 HIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALPDAAIITNIGESHLQDLGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I+ AK EI EGL+  G    N D+    LL+ +    G  +  +FG+  +      K   
Sbjct: 204 ISKAKFEIVEGLKSEGLFVYNGDEP---LLQERVKGYG-GSKETFGRHSSNTMYPTKLAP 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   V +   S E  H  I G H   N +  + I            K LS      
Sbjct: 260 SGFGTTFSVNV---SDEEFHLPILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKLT- 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G R   +      T+I+++YNA+P+S KAAI +L  IS    G+R  V+ DM E+G  
Sbjct: 316 --GMRLEVSTGAKGETIINDAYNASPSSTKAAIDLLQTIST--TGKRYFVVSDMLELGPN 371

Query: 385 SQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            ++FH ++   ++  +I  V     LS F     K+ LP    +H+ E    L  +++  
Sbjct: 372 EEAFHHEVGTYVT-DDIDCVLTYGPLSSFIAEGAKETLPEDRVIHFDEK-SALIAYLKVV 429

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   D V+VK+S       ++  L +E
Sbjct: 430 VKSDDTVLVKASRGMKMEEVVLALQKE 456


>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 451

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 217/465 (46%), Gaps = 29/465 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D+ +A   H I         G++IDSR +  +  F   KG + DGH F+  A++ G
Sbjct: 12  WISCDIDEAYLEHQI--------KGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG          S  S+  P+  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 64  AGASFYEKGQDIS-DSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  +     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P
Sbjct: 123 MIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+        K H   +
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEPLL-----KPHVENV 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLG 301
           K         N +  L    + S+   +   +  K     H+    +G H  +N  + + 
Sbjct: 238 KNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKE----HYELPILGIHNMKNATIAIA 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   L  D +T  K +S       R +R+    NQ   T+I+++YNA+P SMKAAI  LS
Sbjct: 294 IGHELGLDYNTIQKNISNVQLTGMRMERH-VTDNQ--ITVINDAYNASPTSMKAAIDTLS 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
               H  GR+I VL D  E+GE SQ  H D+   L    I  +   G     +     + 
Sbjct: 351 ----HMNGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGNDAKFISRTGGQF 406

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  V Y    + L  +++S L   D V++K S       ++N L+
Sbjct: 407 VEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451


>gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 473

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 208/403 (51%), Gaps = 19/403 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q + G S G  P   V G SIDSR++ P + F+A+ G + DGH F+  A +KGA
Sbjct: 15  TLQKITQQLCGRSAG-SPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQFVTAAFEKGA 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV+  +    G    P   V+DV  AL + +   R   +A +I +TGSVGKTTT++M
Sbjct: 74  AAAVVSQPVTREAG----PCIQVEDVAAALAEASFEHRNSLEALMIGLTGSVGKTTTRQM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS      A   ++NN +GVPL+L  +    ++ + E+G S  GEI  L  LV+P 
Sbjct: 130 LHAVLSKAYTGTASRENFNNRLGVPLSLLGISEADEYAVIEMGASAQGEIGALGELVQPE 189

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T IAPAHL  F  IE + S K+E+F+ L ++G   L         ++ + H+    
Sbjct: 190 IALLTQIAPAHLDGFGSIEGVISGKSELFDNLPESGLAVLPEHLYVMPAIRRRIHS---- 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G+  +AD  L   +  S Q  ++ +  G S  +  +  G H A +  + + I   
Sbjct: 246 RVLTVGQGPSADICLNNIRLDSGQ--LKFECDGDSFRM--NAPGKHFASSAGLCVAIARE 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L          L  F P EGR     C    G +T++D++YNA+P SM A +  L Q S 
Sbjct: 302 LGLTTAQIQAGLENFSPVEGRC----CRRMIGDWTVLDDTYNASPISMSAGLVSLLQTSV 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            G   RIA+LGDM  +GE ++ +H  L + ++   I ++ + G
Sbjct: 358 SGP--RIAILGDMLCLGEHAKYYHRKLGQEVARTGIDYLLVYG 398


>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
 gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
          Length = 450

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 25/464 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T     + + G  I   P    N    DSR +   + F+A+KG  +DG+ F+ +AV  GA
Sbjct: 6   TLGSFAKIVDGRIIQGNPLMPFNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNAVDAGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V +      I   +  +  V++ L AL  LA   R RS   ++AITGS GK+TTK+M
Sbjct: 66  SALVADKFFADKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKSTTKQM 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L     +     A +G+ NN  G+P +L  +     FG+FELG S  G+I  +     P 
Sbjct: 126 LLSICKTSGPARANMGNLNNQFGLPFSLLEIDSKDKFGVFELGASKKGDILEIGKPTLPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT ++ AHL  F  ++ +   K E+ + L   G +  N DD+  + LK +     I 
Sbjct: 186 VAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFGGILVFNSDDAMLKKLKTEYKGKAI- 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--HMAQNMLMTLGIV 303
              SFG    AD Q++  K       +E   +G   EV    + +  H   N        
Sbjct: 245 ---SFGFKSGADLQIKNKKN------LEFVYKG---EVFSFDLQFEKHNKLNAAAAAAGA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D   K L+ +     R +  +     G    I + YNANPASMK AI++L++ 
Sbjct: 293 IALGLYKDNIEKGLAAYEAMPMRMEERKI----GNVDFILDCYNANPASMKNAITLLAK- 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
                G R+AVLGDM E+G  S  +H  LA++L    I +++LSG  + A  +AL     
Sbjct: 348 --RKAGPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFLSGPEMAAAAEALKTKNP 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  + YS         ++  L +G   ++K+S S  + ++++ L
Sbjct: 406 AAKLKYSLEYKDWAQDLKEVLKNGGTCLIKASRSMNYEKILDCL 449


>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 454

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 219/446 (49%), Gaps = 24/446 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR++ P E F A+KG ++DGHD+   AV+ GA  VVV+ ++  S     + VF V
Sbjct: 22  GVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVSHEV--SGLPAGVAVFMV 79

Query: 89  DDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +D L A  +LA A RLR +   + AITGS GKT+TK++L   LS         G++NN I
Sbjct: 80  EDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLLAACLSCKYNVVKTQGNFNNEI 139

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+P TL  +  D D  + E+GM  LG+I  L  +  P   +IT +   H+     +E I 
Sbjct: 140 GLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIAEPDSGLITNVGETHMELLGSMENIG 199

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK+EI   L + G   LN D+ +      K+ A   K +Y FG  +N DF+        
Sbjct: 200 KAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKA---KVVY-FGLGENCDFRGSDIVTSG 255

Query: 268 EQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +      +  G+++ V    IG H   N L    I       V  A+ A ++   +  
Sbjct: 256 AGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSA--IAGAFCYGVPMAVSAQALATARL- 312

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGE 383
            G R    +  G  T I+++YNA+PASM+AA+  L++   + HG+ R IAVL DM E+G+
Sbjct: 313 TGSRQEI-VYIGDITFINDAYNASPASMEAALKTLAEAKKAAHGKARTIAVLADMLELGD 371

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHV-HYSETMDGLFLFIQ 438
           +S+  H  +        +  V   G     + D       +S H     E  D L L   
Sbjct: 372 ISEDAHRRVGRWAVENGVDFVLTYGPQAAYIADEAAELGGKSKHCADRQEAADALRLMAS 431

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    GD++++K S+S    +++ L 
Sbjct: 432 A----GDIILLKGSHSMQVDKMLELF 453


>gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 442

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 226/447 (50%), Gaps = 32/447 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+S DSR +   + F A+   + DGHD++  A+ KGA  V+V  D    I S  IP 
Sbjct: 22  IVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLV--DDRHQIDS-KIPA 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L AL +L    R +    ++AITGS GKTTTK+M +  + S  KT+    ++NN
Sbjct: 78  IIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMASAIMGSQYKTFKTPENFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL  MP D +  + ELGM   G++  L+ LV P IA+IT I  AH+  F   E 
Sbjct: 138 EIGVPLTLLTMPDDTEVLVVELGMDRPGQLTTLSELVSPDIAIITMIGEAHIEFFKTREN 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI +GL+  GT+ + YD+      + K      + + +FG+       ++    
Sbjct: 198 IAKAKLEITKGLKSQGTLLVPYDEPLLTNAQVK------QNVQTFGQD------IKDINS 245

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S ++    Q    ++ +    +G +   N L  +    +L  ++  A +AL  F   + 
Sbjct: 246 SSSKTIFTYQNTRFAIPL----LGRYNIMNALAAISAGILLHIELKNAAEALQHFDLTKN 301

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++   +       LI + YN+NP ++ A ++ L +I P     +  VLGDM E+GE +
Sbjct: 302 RTEQLTTSHG---VNLISDVYNSNPTAVAAVLATL-KIIP--ATHKYVVLGDMLELGEQA 355

Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPR---SIHVHYSET--MDGLFLFIQS 439
            S H  LAE +   N+  V+L G      L   L R   S H+H  ET  +  L   +Q+
Sbjct: 356 ASLHACLAETVINANVDGVYLVGPLMNKYLYPILQRRFDSAHLHQYETDQLAELIKDLQT 415

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +GDV+++K+S+      ++N L++
Sbjct: 416 LGENGDVILLKASHGIHLENVVNALVK 442


>gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 460

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 218/446 (48%), Gaps = 33/446 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+RSI   E F A+KGP++DGH FI  A Q GA  V+V   +      + IP F V 
Sbjct: 27  INTDTRSICSGEVFLALKGPNFDGHKFIAQAKQNGAIGVIVQHKV-----DVDIPQFIVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  +  A   +     IAITGSVGKTT KEM    LS      A  G++NN IGV
Sbjct: 82  DTRLALGIIGGAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     F + ELG +HLGEI + T + +P +AV+  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLEPQHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---C 266
           K EIF+GL+  G   +N D  F +    K   L  + +  F  S+  D     W +    
Sbjct: 202 KGEIFDGLKDDGVAIVNCDSEFSQYWLDK---LDGRKVTRFSSSEKLDI----WAENISL 254

Query: 267 SEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            E +     L  K+ ++ V   + G H   N L+   + S     ++    AL+     +
Sbjct: 255 DENARASFTLCTKNAQIPVKLALPGKHNISNALIAAALTSEFDVTLEDIANALATMGDVK 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR      +      T++D++YNAN  S+KAAI +LS +    +G RI  LGDM E+GE 
Sbjct: 315 GRVNLINVS---DLLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGELGEE 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLV 442
           ++ +H ++ E      I+ ++  G       D   LP     H+S   + +   IQ+S+ 
Sbjct: 368 ARQYHQEVGEYALEQGINELFTLGVLSRYASDVYGLPNR---HFS-NREQMLQQIQTSIK 423

Query: 443 DGD---VVVVKSSNSCGFYRLINLLL 465
             D    +VVK S S     L+  L+
Sbjct: 424 KVDKKTTIVVKGSRSSRMELLVTDLV 449


>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 443

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 224/446 (50%), Gaps = 32/446 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ +SR +   + F A+     DGH ++  A+ +GA  V+V+ +   S     +P  
Sbjct: 24  VTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDALDRGAAAVLVDDNHAIS---EKLPAI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +LA   R +    +IAITGS GKTTTK+M    +S++ KT+    ++NN 
Sbjct: 80  IVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTKDMTAAIVSTVFKTFKTPNNFNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL  MP D +  + ELGM   G++  L+ LV+P IA+IT I  AH+  F     I
Sbjct: 140 IGVPMTLLSMPEDTEVLVVELGMDRSGQLTMLSQLVQPDIAIITMIGEAHIEFFKTRANI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G +F+ +D+         + A+ ++ +  FG++ +A          
Sbjct: 200 AKAKLEITNGLKADGVLFIPFDEPLL------TQAVIMQRVVWFGQNIDA---------- 243

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E +        K+       IG +   N L  +    +L  D+  A++AL  F   + R
Sbjct: 244 VETASDHTNFIYKNTRFAIPLIGGYNIMNALAAISAGILLHIDLKKAVQALQTFDLTKNR 303

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R   A  +G   LI + YN+NP ++ A ++ L  I       +  VLGDM E+GE + 
Sbjct: 304 TERLVTA--RGVI-LISDVYNSNPTAVAAVLATLKAIPAQ---HKYVVLGDMLELGEQAN 357

Query: 387 SFHIDLAEVLSLYNISHVWLSG--FH---VLALKDALPRS-IHVHYSETMDGLFLFIQSS 440
             H  L + +   N+  V+L G  F+      LK     S +H + ++ +  L L +Q+ 
Sbjct: 358 ELHAGLGQKVLDANVDGVYLVGKLFNQNMAPMLKTQFESSDVHQYTTDQLAKLTLDLQTL 417

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466
              GDV+++K+S+      ++N L+E
Sbjct: 418 GEAGDVILLKASHGIHLENVVNALIE 443


>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 455

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/428 (32%), Positives = 215/428 (50%), Gaps = 27/428 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GISID+R+I   + F   +G H +GH ++  A +KGAG  +   D         IP+ 
Sbjct: 24  VSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGAGASLWQKDEPNPPDG--IPLL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL ++A A RL  KA  I ITGS GKT+TK++L   L+   K    IG++NN 
Sbjct: 82  FVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGNFNNQ 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+P+T+ ++  D +  + E+GMS  GEI FLT L +PH+ VIT I  AH+ +      I
Sbjct: 142 LGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGI 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI +G++  G +F + D+   + L AK   +      +FG +  N  +       
Sbjct: 202 AQAKFEIIQGMQPEGLLFYDGDEPLLQELVAKEQHI---NAVAFGLEPDNLLYADHIHAN 258

Query: 266 CSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S+     ++G     V   +G H  +N L+ + I + L  + +    +L      +
Sbjct: 259 ANGSSFTTHGMIEGDFFISV---LGKHQVKNTLIAMLISNQLGLNNEQIRTSLEHVVLTD 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMCEMG 382
            R ++ +   N   F  I+++YNA P S+KAAI  +  S I P     +  VLGDM E+G
Sbjct: 316 MRMQQVQGT-NGALF--INDAYNAAPTSVKAAIQFIATSTIRP----EKWLVLGDMLELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--------HYSETMDGLF 434
              Q FH  LAE ++   I +V L G  +  L + L               Y+  ++ L 
Sbjct: 369 PDEQRFHEGLAEYINEQEIDYVCLFGARMTHLYEVLKEDFEADRLLYTEDDYTAIIEKLE 428

Query: 435 LFIQSSLV 442
           L  +SS+V
Sbjct: 429 LANESSIV 436


>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 458

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A    V T  V  + +   ++PV  V+D L AL  LA   R +    +I +TGS GKT+T
Sbjct: 65  A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L 
Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +
Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237

Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ 
Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   + L         G R          T+I+++YNA+P +M+AA  +++
Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417
            +   G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +     
Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            P    V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457


>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
 gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
          Length = 458

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P
Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457


>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
 gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SID+R I     +  I+G  +DGH F+  A++ GA   +   ++      ++IPV 
Sbjct: 27  VQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP--PVNIPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL  LA + R +    +I +TGS GKT+TK+++T  L++  K     G++NNH
Sbjct: 85  FVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT I  AHL +    + I
Sbjct: 145 IGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    N D+      +  S  L  +TI +FG ++  ++        
Sbjct: 205 AEAKLEIVTGLQDGGVFVYNGDEPLL-TNRVPSMNLAAETI-TFGDARANNYYPTSVTLQ 262

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  ++ ++  Q +++      +G H   N L ++ I        +   + L         
Sbjct: 263 ATGTYFKMN-QDENIVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMT--- 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +   T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+   
Sbjct: 319 GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 376

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
            FH ++ +++    IS+V+  G
Sbjct: 377 QFHYEVGKLIDPARISYVFTYG 398


>gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 480

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 220/468 (47%), Gaps = 26/468 (5%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           Q H I    +     + IDSR + P   F A+ G   DGHDF   AV  GA  V+    +
Sbjct: 16  QPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAARAVADGAVAVLAARPV 75

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            A+     +P   V DV  AL  LA A  LR  AT++A+TGS GKT+TK+++   L    
Sbjct: 76  PAAAADAPVPSIVVPDVQAALGALARAVVLRLDATVVALTGSAGKTSTKDLIAQLLRRHG 135

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T    GS NN IG+PLT           + E+G    G IR+LT L  P + ++  +  
Sbjct: 136 PTVWTPGSLNNEIGLPLTAMSADETTRHLVLEMGARGKGHIRYLTDLTPPRLGLVLNVGT 195

Query: 195 AHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           AH+  F G E IA AK E+ E L    + G   LN DD     +  ++ A   +T+  FG
Sbjct: 196 AHIGEFGGREAIAEAKGELVEALPAAAEGGVALLNADDPLVRAMATRTKA---RTVL-FG 251

Query: 252 KSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           ++ +AD +    +       S+      G S EV     G H   N L    +   L   
Sbjct: 252 EAADADVRAENVRLADGGRPSFTLHTPTGCS-EVTMRLYGEHHVSNALAAAAVAHELGMS 310

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHG 367
           VD    ALS    + G+  R+R  + +     T+++++YNANP SM+AA+  L  +   G
Sbjct: 311 VDEIAVALS----EAGQLSRWRMEVTERRDGVTVVNDAYNANPESMRAALRALVAMGTAG 366

Query: 368 E---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
           +   GR  AVLG M E+GE S + H  +  +    N+S +   G    A  D   ++   
Sbjct: 367 QAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWLDMGAKNEGS 426

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                VH S+    + L ++S L  GDVV+VK+S S G  R+   LLE
Sbjct: 427 WGEESVHVSDVRAAVDL-LRSELRPGDVVLVKASRSVGLERVAQALLE 473


>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 460

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 33/456 (7%)

Query: 22  VPQGFVNG-----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DM 74
           VP    +G     +  DSR+I P   F A+KG  +DGH F+  A++ GA   VV+   + 
Sbjct: 13  VPMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVSEVPEG 72

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSI 133
           VA+   + +P     D L A  ++A   RL  K  T+IAITGS GKT+TK+ +   L   
Sbjct: 73  VAADRCVVVP-----DTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGER 127

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +      ++NN IG+P TL  +  D +  + E+GM  LG+IR + H+  P  AVIT + 
Sbjct: 128 YRVIKTQANFNNEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVG 187

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E IA AK+EI E        FLN DD    +++  +       ++++G  
Sbjct: 188 DTHLELLGSLENIAKAKSEILEDFTPKNHAFLNGDDPRVSVMETGA------AVHTYGID 241

Query: 254 KNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            +AD    K  + S      V     ++ G + +V    IG H   N L  + +  +   
Sbjct: 242 SDADV---KAVEISADGLRTVFTYRSRITGATQKVQLPLIGRHNVMNALAAVAVGEVYGV 298

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHG 367
                 + L         G R    L+ G  T+I+++YNA+PASM+AA+  L   +   G
Sbjct: 299 PDAAIARGLENLKMT---GMRQEI-LHFGPVTVINDAYNASPASMEAALRTLGDVVKSQG 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHY 426
           +GR IAVL DM E+G  SQS H  +    S Y ++ +   G     + +A  ++ + VHY
Sbjct: 355 KGRAIAVLADMLELGAHSQSGHAQVGTWCSQYGVTELVCYGPESRFMAEAAQKAGVPVHY 414

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++        +   +   DVV++K S+    ++LI+
Sbjct: 415 AQDRGEAARVLARLVRPDDVVLLKGSHGMEVFKLID 450


>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
          Length = 415

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 220/424 (51%), Gaps = 25/424 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I+P   F A+KG +Y+ ++F   A+ KGA  V+++     +  +    +  V+
Sbjct: 16  VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTDEN---KMLLVN 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L AL +LA   R +    IIA+TGS GKTTTKE++ + LS   KT A IG+ NNHIGV
Sbjct: 73  NSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D D  I E+G +H  EI  L  +  P    IT    AHL  F GIE +   
Sbjct: 133 PLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFGGIEGVIKG 192

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  L+    T F+N DDS  E    K+  +  +  +S   +K A+  + K +    
Sbjct: 193 KSEMYTYLKTHNKTAFVNLDDSIQE---EKTQHIN-RYTFSTDNNKKANIIINKIEA--- 245

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +++++  G  +E+  + IG + + N+ + + I +          +A+  + P   R +
Sbjct: 246 NPFVKIKYNG--IEIQSNLIGIYNSNNINVAISIGTYFNVSEQDIKQAIENYIPANNRSQ 303

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                + +G   +I ++YNANP+SM AAIS   Q+    +G +IA LGDM E+GE S + 
Sbjct: 304 ----LIEKGNNKIILDAYNANPSSMAAAISNFQQL----DGSKIAFLGDMFELGEESLTE 355

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + E +  +   + +  G +  + K       H+HY  + +  F+  + + ++ + ++
Sbjct: 356 HKKIIESILNHTSINFYFIGKNFYSSK---IEKEHIHYYTSFED-FVENKPNGINNNTIL 411

Query: 449 VKSS 452
           +K S
Sbjct: 412 IKGS 415


>gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
 gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
          Length = 454

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 135/411 (32%), Positives = 204/411 (49%), Gaps = 26/411 (6%)

Query: 4   LWTFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L T  D+L A + G  + I      + +S D+R++     F A+ G  +D HDF+  A Q
Sbjct: 6   LTTLQDVLNAELIGQDVTI------DAVSSDTRTLGKGALFIALVGERFDAHDFVETAKQ 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  +     +V+ +  + +P   V D   AL +L    + +     IA+TGS GKTT 
Sbjct: 60  NGASAL-----LVSKVVDIDLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCGKTTV 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
           KEML   LS   +T    G++NN IGVPLTL R+ P D D+ + ELG +H+GEI + T L
Sbjct: 115 KEMLAAILSQKGQTLYTAGNFNNDIGVPLTLLRLTPFD-DYAVIELGANHIGEIAYTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P +A++T +A AHL  F  ++ +A AK EIF+GL   G   +N D +  +        
Sbjct: 174 VKPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDFWTPALEG 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTL 300
             + T+   GK   AD++                +    +  V   + G H   N ++  
Sbjct: 234 KQVLTMTVTGKP--ADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVANAVLAA 291

Query: 301 GIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + + + V  D  ++ L    P +GRG     +  +    LID+SYNA+ A+MKAA+ 
Sbjct: 292 IAATKIDSRVTMDDVVRGLGSVSPVKGRGA---ISFPRPGLRLIDDSYNASLAAMKAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           +L       +G +I VL DM EMGE + S H D+A  LS  +I  V   G 
Sbjct: 349 LLDSF----DGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLTYGL 395


>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
 gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
          Length = 461

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SID+R I     +  I+G  +DGH F+  A++ GA   +   ++      ++IPV 
Sbjct: 30  VQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP--PVNIPVI 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL  LA + R +    +I +TGS GKT+TK+++T  L++  K     G++NNH
Sbjct: 88  FVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT I  AHL +    + I
Sbjct: 148 IGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    N D+      +  S  L  +TI +FG ++  ++        
Sbjct: 208 AEAKLEIVTGLQDGGVFVYNGDEPLL-TNRVPSMNLAAETI-TFGDARANNYYPTSVTLQ 265

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  ++ ++  Q +++      +G H   N L ++ I        +   + L         
Sbjct: 266 ATGTYFKMN-QDENIVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMT--- 321

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +   T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+   
Sbjct: 322 GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 379

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
            FH ++ +++    IS+V+  G
Sbjct: 380 QFHYEVGKLIDPARISYVFTYG 401


>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 455

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 226/474 (47%), Gaps = 36/474 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +F + ++ + G  +    P   V G++ID R + P  AF A  G   DGH F+  
Sbjct: 1   MTPM-SFANFVRVVGGTPVLHEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA + VV  D+  ++G    P   V + L A+  LA   R + +  ++ ITGS GK
Sbjct: 60  AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   L ++        + NN +G+PLT+ +        + E+GM  LG+I  L 
Sbjct: 116 TTTKEMVAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+I VIT I   H+      E IA AK E+   L   G   LN DD +   ++ ++
Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRT 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGY 290
            A     I  +G  +  D       + +  +W +   +G S EV   HG        +G 
Sbjct: 236 SA----RILWYGMGEGCDI------RATSVTWSQ---EGMSFEVDTPHGTATLRIRLLGQ 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + +   L   +      L     + GR +     ++ G  T+ID++YNA+P
Sbjct: 283 HNVMNALAAIAVGQTLGISLGDIQIGLGRVEAQRGRLR----LVDAGDVTVIDDAYNASP 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           +S+ A++ VL +I+    G R+AVLGDM E+GE++   H ++   ++   +  +   G  
Sbjct: 339 SSVGASLEVLERIAR--PGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCVGVL 396

Query: 411 VLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            + +  A   +    V +   ++ L   + S L  GDVV+VK+S      R ++
Sbjct: 397 AVEMARAAEEAGVPVVRHFNALEELLASVGSYLQPGDVVLVKASRGVQLDRAVD 450


>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Ames]
 gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Sterne]
 gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A1055]
 gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Vollum]
 gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Australia 94]
 gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus anthracis CI]
 gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Ames]
 gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A    V T  V  + +   ++PV  V+D L AL  LA   R +    +I +TGS GKT+T
Sbjct: 65  A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L 
Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +
Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237

Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ 
Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   + L         G R          T+I+++YNA+P +M+AA  +++
Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417
            +   G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +     
Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            P    V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457


>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SSC/2]
          Length = 452

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 236/467 (50%), Gaps = 27/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG- 64
           T  D+L+A  G  +   P   ++ +S +S  I P   F  I G   D H FI +A+++G 
Sbjct: 5   TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L   +T+      S + P   V D L A+ ++A   R +    II +TGSVGKTTT+E
Sbjct: 65  ACLTQEHTE-----ASGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTRE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    K +  IG+ N+ +GVPLTL  +  + + G+ E+GMS  G+I  L +++ P
Sbjct: 120 MIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++ V+T +  +H+      + I   K +I  GL + G +FLN D+        + H   +
Sbjct: 180 NVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMI-----RKHIDYV 234

Query: 245 KTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           K  Y F G +++  ++  K ++   Q+  E         +  + +G H   N L  + I 
Sbjct: 235 KKPYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIG 294

Query: 304 SILTADVD-TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             L  DV  +AIKA LS F      G+R +  ++   + LID++YNA+P SMKA++S+LS
Sbjct: 295 --LRYDVPMSAIKAQLSTF-----SGQR-QNIIHVNDYILIDDAYNASPDSMKASLSILS 346

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDAL 418
           +      GR+IAVL DM E+G  S  +H ++   ++   ++ ++++G    H +      
Sbjct: 347 EFKTR--GRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKE 404

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             S+H     +   L  F+++ L   DVV++K SN      +   L+
Sbjct: 405 NPSLHTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALM 451


>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
 gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SID+R I     +  I+G  +DGH F+  A++ GA   +   ++      ++IPV 
Sbjct: 27  VQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP--PVNIPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL  LA + R +    +I +TGS GKT+TK+++T  L++  K     G++NNH
Sbjct: 85  FVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT I  AHL +    + I
Sbjct: 145 IGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    N D+      +  S  L  +TI +FG ++  ++        
Sbjct: 205 AEAKLEIVTGLQDGGVFVYNGDEPLL-TNRVPSMNLAAETI-TFGDARANNYYPTSVTLQ 262

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  ++ ++  Q +++      +G H   N L ++ I        +   + L         
Sbjct: 263 ATGTYFKMN-QDENVVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMT--- 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +   T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+   
Sbjct: 319 GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 376

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
            FH ++ +++    IS+V+  G
Sbjct: 377 QFHYEVGKLIDPARISYVFTYG 398


>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU028]
          Length = 451

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 145/443 (32%), Positives = 210/443 (47%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+SIDSR I     F   KG + DGH FI  A+  GAG V    +   S G+   P+ 
Sbjct: 26  INGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKYSEGNQG-PII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   LS+  K     G+YNN 
Sbjct: 85  WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P IAVIT I  +H+ +    E I
Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+        K H   +K         N+D         
Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEPLL-----KPHVNQVKNAKLISIGLNSDNTYTCHMND 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +   +   +  K  E  H  I G H  +N  + + I   L  +       +        
Sbjct: 260 VKNEGIHFTINQK--EHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R+  + N    T+I+++YNA+P SMKAAI  LS +    +GR+I +L D+ E+G  S
Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSGM----KGRKILILADVLELGPNS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLV 442
           Q  H  + E L   NI  ++  G     + D+    I V  ++  D     IQ   S + 
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFGKEASYIHDS--GKIFVKEAKYFDNKEQLIQTLISQVK 428

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
             D V+VK S       +++ LL
Sbjct: 429 PEDKVLVKGSRGMKLEEVVDALL 451


>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
 gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 227/464 (48%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + ++       +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETSSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
             G  ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +      P+
Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V   ++ + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457


>gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
 gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
          Length = 465

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 222/434 (51%), Gaps = 20/434 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSI 83
           +  ++ D+R +     F  + G + DGH+FIL AV+ GA + + +    D+   + +   
Sbjct: 28  ITSVNFDTRKLVKDSLFVPLLG-NNDGHNFILKAVENGAAVSLWSKPLKDLPLELEN-EF 85

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+D L AL  LA     +    ++ ITGS GKTTTK+M    LSS  + +   G++
Sbjct: 86  PIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMADAVLSSQYRVHKTQGNF 145

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P+T+  MP++ +  I E+GMS  GEI+ L+ L +P +A+IT I  +H+  F   
Sbjct: 146 NNHIGLPITILEMPIETEVVILEMGMSRAGEIKVLSDLAKPDVAIITMIGESHIEFFGSR 205

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRK 262
             IA AK EI  GL++ G +    ++    LL+ +   L    + +FG S   D + L  
Sbjct: 206 AGIADAKMEICSGLKENGVLIYPGEEP---LLQERVAVLKGSQLKTFGTSPENDLYPLNI 262

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             Q ++ S+  V  +   + V    +G +   N L  L     L   ++ +   L+ F  
Sbjct: 263 DAQMNQTSF--VTNERPDLVVSLPVLGTYNVNNALAALMAGMTLGISIEKSAPKLAQFQL 320

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            + R +  +  +N+   ++++++YNANP +MKA +   S  +    G++I VLGDM E+G
Sbjct: 321 TKNRTEWLK-GINES--SILNDAYNANPTAMKAVLDNFSTFT--NTGKKIVVLGDMLELG 375

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG--FHVL--ALKDALPRSIHVHYSETMDGLFLFIQ 438
           E S   H+ + + L    I  V L G   +VL   LK         +++   + L  F++
Sbjct: 376 EQSTQLHLSVKDSLDPTQIEKVVLYGEQMNVLYEVLKGKFDEENLSYFTGAKEPLIQFVK 435

Query: 439 SSLVDGDVVVVKSS 452
             +  GD +++KSS
Sbjct: 436 KQIEHGDYILLKSS 449


>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 456

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 201/367 (54%), Gaps = 13/367 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSRSIA  E F A++G ++DGHD++  A  +GA   +V TD    + +LS+P+  
Sbjct: 22  SGVSTDSRSIAAGELFVALRGENFDGHDYVAAAKARGAAAAIVATDAAEGLQALSLPLVQ 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNN 145
           V +   +L  LA   R R    ++A+TGS GKTTTKEM+   L +   +   A  G++NN
Sbjct: 82  VAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILKAAYGEAVLATQGNFNN 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLTL R+       I ELGM+H GEI +L  + RP +A++T    AHL+    +E 
Sbjct: 142 DIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIARPTVALVTNAQRAHLAGMGSLEA 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA+ K  I+ GL++TG    N DD + +L +++   L + T   FG  + AD    K+  
Sbjct: 202 IAAEKGSIYTGLDETGVAVFNADDPWAKLWRSQCRGLRMMT---FGFEQAADVT-GKFHL 257

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +S + +       +VV    G H A+N L            +      LS F   +G
Sbjct: 258 HGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALAAGISLTAVQAGLSAFRGLKG 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R R AL+     L+D++YNANP S++A I VL+       G++I VLGDM E+GE+S
Sbjct: 318 RLQR-RTALHGA--VLLDDTYNANPDSVRAGIDVLAATI----GKKILVLGDMGEIGEMS 370

Query: 386 QSFHIDL 392
             FH ++
Sbjct: 371 AQFHDEI 377


>gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
 gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
          Length = 460

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 216/444 (48%), Gaps = 17/444 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  DSR I     F A+KG  +D HDF    V++GAG ++V+  +      +  P  
Sbjct: 30  INTVKTDSRKIVCGGLFIALKGEKFDAHDFAADVVKQGAGALLVSRRL-----DIDCPQV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+ KLA   R +SKA ++A+TGS GKT+ KEM    L     T    G++NN 
Sbjct: 85  VVKDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  F + ELG +H+GEI + T + RP  A++  +  AHL  F  +  +
Sbjct: 145 IGVPLTLFRLTEEHQFAVIELGANHIGEIAYTTAMTRPESALVNNLFSAHLEGFGSLAGV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIF GL   GT  +N D + +   +           +S   +  ADF      + 
Sbjct: 205 AKAKGEIFAGLAPEGTAIINLDSNDWGNWQHGIREQQRVWHFSVTPAAGADFYATDIVEQ 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   +      +E++    G H   N L    +   + A ++     LS      GR
Sbjct: 265 PLATHFCLHTPIGKIELILPLPGRHNVANALAASALAISVGASLEDICAGLSALKAVPGR 324

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              +   L+ G  T++D++YNAN  SM AA +VLSQ+S    G R+ V+GDM E+G+ + 
Sbjct: 325 --LFPIHLSAG-KTVLDDTYNANTGSMIAAANVLSQMS----GYRVMVVGDMGELGKQAA 377

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF-LFIQSSLVDG 444
             H ++ + ++  NI  V+  G     + DA  R  H  + +E +  L  L  Q  ++  
Sbjct: 378 ECHREVGKAVATTNIDKVFSVGTLSSHISDASGRGQHFANKTELVAALLPLLEQHEMIS- 436

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
             +++K S S     ++N L E F
Sbjct: 437 --ILIKGSRSTAMEEVVNALKENF 458


>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 454

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 218/398 (54%), Gaps = 46/398 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS++I     F  I     DGH ++  A+  GA         VAS+   S    
Sbjct: 27  IHGVCIDSKNIKEGNLFVPIIRVK-DGHGYVKEAMDNGA---------VASLWKKSYGTP 76

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K++++  LS+  + +  
Sbjct: 77  PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKDIISTILSTTHRVHKT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 137 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLET 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258
               EEI+ AK EI +GL++ G +  N D++   LL  K++ L ++   SFG+    D  
Sbjct: 197 LGSREEISKAKLEIIDGLKEEGLLLYNGDET---LLSRKNNVLVLEC-KSFGEKDTNDLF 252

Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               QL ++    K    +   +V L GK   +++  +G  + Q         ++ T  +
Sbjct: 253 PTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-NILNTIVGIAVGQ-------FYNVPTEKI 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A++ +++ H       R++    +  FT+I++++NA+P+SMKAAI  L +++ +   +
Sbjct: 305 QDALRQINITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KK 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +I V+GDM E+G+ ++++H ++ ++L+  NIS+V+  G
Sbjct: 357 KIIVIGDMLELGKEAETYHREIGKMLNQENISYVFTYG 394


>gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 450

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 218/444 (49%), Gaps = 27/444 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +   + F A++G   +G DF+  A+ +GAG V+V+         +S P  
Sbjct: 27  IQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQGAGGVLVDI-------PVSAPGV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL  L    R R    ++A+TGS GKTT KE+LT  L+      A  G+ NNH
Sbjct: 80  LVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVKEVLTAILNQSGPVLATRGNQNNH 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTLAR+  +  + + E+GM+H GE+  L+ L RP +A+I   APAHL     +  I
Sbjct: 140 VGVPLTLARLGPEHRYAVLEMGMNHPGELTLLSGLARPTLALINNAAPAHLEGLGSVAAI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A+AK EI  GL+  G   LN DD F +    ++       ++ F            W+  
Sbjct: 200 AAAKGEILSGLDNRGLTILNGDDPFADFWAERAPG----EVWRFSLEHRPTRVRGHWR-A 254

Query: 267 SEQSW--MEVQL-QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            EQ    +EV+  QG+ ++E+     G H  +N+L        L   +    +A++    
Sbjct: 255 HEQGGGHLEVRAPQGQFTLEIPLP--GQHNGRNVLAATTAALALDIPIPQIQRAVAGLQT 312

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR  ++R   +     ++D++YNANPAS++AA+ VL+       G+RI VLGDM E+G
Sbjct: 313 IPGR-LQWRSGPHGS--RMLDDTYNANPASLEAALRVLAAQP----GQRILVLGDMGELG 365

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +  +H     +     +  ++  G   LA + A     +      +  L   +   L 
Sbjct: 366 PEAALYHHQAGLLARQLGVERLYTLG--SLAEEAANAFGTNAEAFSELPPLLAALHRRLD 423

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
           +  VV++K S +    R++  L E
Sbjct: 424 EETVVLIKGSRAARMERVVQALGE 447


>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
 gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
          Length = 453

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 224/471 (47%), Gaps = 32/471 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L++  +G  I      +++G +IDSR I   + F  IKG   DGH FI  A +KG 
Sbjct: 5   SLEQLVKITEGRLIQTGTTDWISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                 T+ +     +S+ +  V+  L A+  LA   R R    +IA+TGS GKTTTK++
Sbjct: 65  STSFTETEALDFPEGISVVL--VESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   KT    G++NN  G+P TL  +  + +  + E+GM HL +IR     VRPH
Sbjct: 123 IASVLSQKYKTLKTQGNFNNEYGIPQTLFNLQPEHEIAVIEMGMDHLDDIRKSIGEVRPH 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VIT I  AH+      + I +AK EIFE +       LN DD +   +K       + 
Sbjct: 183 ISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDIALLNGDDVYLNKIKEDEEPFSVV 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G+    D  L+  +  S    +     G+     + GI  H   N L  + +   
Sbjct: 243 RVGIKGE----DLSLKAEQVDSSAQGIRFVADGEHFHFAYPGI--HNVYNCLTAIWLGRY 296

Query: 306 LTADVDTAIKALSVFHPKEGRGK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                +   + L  F P   R    R R A      T+I++SYNANP +MKAA+ +L  +
Sbjct: 297 YQMTHEEIQRGLDAFKPSGNRMDIVRVREA------TVINDSYNANPDAMKAALDMLWDM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDL-------AEVL-SLYNISHVWLSGFHVLALK 415
                 RR+AVLGDM EMGE+++S H+++       A+VL ++   S  ++ G    +L 
Sbjct: 351 GKS--CRRLAVLGDMLEMGEMAESGHLEIGAYAAEKADVLIAVGPESKAYIKGAGA-SLA 407

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           D         ++   +G    ++  +  GDV+++K+S      + + ++ E
Sbjct: 408 DE-----RCFWTADAEGAGKLLRKLMAPGDVILIKASRGVHLEKTLKMIQE 453


>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
 gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
          Length = 451

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 216/465 (46%), Gaps = 29/465 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D+ +A   H I         G++IDSR +  +  F   KG + DGH F+  A++ G
Sbjct: 12  WISCDIDEAYLEHQI--------KGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKDG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG          S  S+  P+  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 64  AGASFYEKGQDIS-DSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  +     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P
Sbjct: 123 MIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+        K H   +
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEPLL-----KPHVENV 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLG 301
           K         N +  L    + S+   +   +  K     H+    +G H  +N  + + 
Sbjct: 238 KNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKE----HYELPILGIHNMKNATIAIA 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   L  D +T  K +S       R +R+    NQ   T+I+++YNA+P SMKAAI  LS
Sbjct: 294 IGHELGLDYNTIQKNISNVQLTGMRMERH-VTDNQ--ITVINDAYNASPTSMKAAIDTLS 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
               H  GR+I VL D  E+GE SQ  H D+   L    I  +   G     +       
Sbjct: 351 ----HMNGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGNDAKFISRTGGHF 406

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  V Y    + L  +++S L   D V++K S       ++N L+
Sbjct: 407 VEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451


>gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli]
          Length = 452

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALTAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442
           ++ H+ + E      I  V   G    A+  A    +  H+++    +  L L I    V
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               ++VK S S     ++  L E
Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448


>gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 235/467 (50%), Gaps = 27/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG- 64
           T  D+L+A  G  +   P   ++ +S +S  I P   F  I G   D H FI +A+++G 
Sbjct: 5   TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L   +T+      S + P   V D L A+ ++A   R +    II +TGSVGKTTT+E
Sbjct: 65  ACLTQEHTE-----ASGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTRE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    K +  IG+ N+ +GVPLTL  +  + + G+ E+GMS  G+I  L +++ P
Sbjct: 120 MIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++ V+T +  +H+      + I   K +I  GL + G +FLN D+        + H   +
Sbjct: 180 NVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMI-----RKHIDYV 234

Query: 245 KTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           K  Y F G + +  ++  K ++   Q+  E         +  + +G H   N L  + I 
Sbjct: 235 KKPYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIG 294

Query: 304 SILTADVD-TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             L  DV  +AIKA LS F      G+R +  ++   + LID++YNA+P SMKA++S+LS
Sbjct: 295 --LRYDVPMSAIKAQLSTF-----SGQR-QNIIHVNDYILIDDAYNASPDSMKASLSILS 346

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDAL 418
           +      GR+IAVL DM E+G  S  +H ++   ++   ++ ++++G    H +      
Sbjct: 347 EFKTR--GRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKE 404

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             S+H     +   L  F+++ L   DVV++K SN      +   L+
Sbjct: 405 NPSLHTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALM 451


>gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
 gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
          Length = 454

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 147/475 (30%), Positives = 224/475 (47%), Gaps = 38/475 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+   ++G   G   Q  +  ++ D+R+I     F A+ G  +D HDF   A  KGA
Sbjct: 5   TLSDIANIVEGTQSGGEVQ--IQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAADKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V   +      + IP   V D   AL  L      R     +AITGS GKTT KEM
Sbjct: 63  AALIVERQL-----DIDIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS + +     G++NN IGVPLTL R     DF + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILSGLGQVLYTAGNFNNDIGVPLTLLRSTPQDDFSVIELGANHIGEIAYTTALVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  ++ + +AK EI++GL   GT  +N D     +    S  L  K
Sbjct: 178 IAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALINLDSQGESIW---SEVLQDK 234

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + +F K + NADF        SE         G  +  +H  IG    Q  L+    V+
Sbjct: 235 NLITFSKQNTNADFYGSDIAMSSE---------GYPLFTLHTPIGNVELQLSLLGEHNVA 285

Query: 305 ILTADVDTAIKALSVFHP-KEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              A    AI+  +     K G        +R          TLID+SYNA+  +MKAA+
Sbjct: 286 NAVAASALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLTEHITLIDDSYNASVPAMKAAV 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+Q     +G+R  +LG+M E+G  S + H ++ +  + +   HV   G     + D 
Sbjct: 346 DLLAQFK---QGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLTYGEDAKVISD- 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEEF 468
           L   +H    ++ D +  +I+ +L+        ++VK + S G Y + N L E +
Sbjct: 402 LCGGMHF---QSHDSMLEYIERNLIQLNQTSHTLLVKGALSAGMYTIANALKETY 453


>gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 462

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 219/446 (49%), Gaps = 20/446 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     +  I G + +GH ++  A+  GA  V+   +   +     I V 
Sbjct: 30  IQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNGARAVL--WERREANPPKEIVVI 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL +LA A R +    ++ +TGS GKT+TK++L   L+    T   +G+YNN 
Sbjct: 88  LVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKDILASVLAKHFITQKTLGNYNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +  + +  + E+GM +L E+ FLT +VRP IA+I+ +  AHL N   +E I
Sbjct: 148 IGVPLTLLSLSENCEAAVVEMGMENLQELSFLTQIVRPDIAIISNVGTAHLENLGTMENI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI EGL + G +  N D         +    G   I +FGK +  D  + + +Q 
Sbjct: 208 ARAKMEITEGLGEHGLLIYNGDQQLLRNAAIEKQIPGCIKIRTFGKDEQNDVVVHQVRQL 267

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +     ++ Q   +++    IG H A N          L  D +   +  +       R
Sbjct: 268 PDGLCFSIKDQVYHLDM----IGKHQAMNATAAWIAARALGLDEEEIAQGFASVEKTGLR 323

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELS 385
            +  R  +NQ    ++++SY +NP S  AA+  + +   P+    ++AVLGDM E+GE S
Sbjct: 324 NELVR--VNQCL--ILNDSYKSNPQSALAAVDTMEEFDIPY----KLAVLGDMLELGETS 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
              H  L + +S Y++  V   G    +     +D +  ++  H+++  + L  +++  +
Sbjct: 376 DMIHYTLGKDISSYHLQEVLTIGDMACYIAQGARDNMEHTLVRHFTDK-EELLNYLRPYM 434

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
               +++VK S       +++ L++E
Sbjct: 435 HKECMLLVKGSRGMKLDEVVDELVKE 460


>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 471

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 215/460 (46%), Gaps = 37/460 (8%)

Query: 23  PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS- 80
           P   V G  + DSR   P   F A  G   DGHD+    V+ GA         VA +GS 
Sbjct: 23  PSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYARAVVETGA---------VAVLGSR 73

Query: 81  -LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + +P   VDDV  AL  LA     R  AT++A+TGS GKT+TK+++   L +   T   
Sbjct: 74  PVGVPAIVVDDVQRALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRTKAPTVFT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            GS NN IG+PLT      +  F + E+G   +G IR+LT L  P I ++  +  AH+  
Sbjct: 134 PGSLNNEIGLPLTALSATAETRFLVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHIGE 193

Query: 200 FSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           F G E+IA AK E+ E L   E+ G   LN DD + + + A++ A     +  FG+S  A
Sbjct: 194 FGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAMAARTTA----RVLLFGESDEA 249

Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D +        + Q    +       +V     G H   N L    +   L         
Sbjct: 250 DVRAENVTLTAAGQPSFSLHTPSGCSDVTMRLYGEHHVSNALAAAAVAHELGMSAKEIAT 309

Query: 316 ALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI- 372
           ALS    + G   R+R  + +     T+++++YNANP SMKAA+  L+ +   G GRR  
Sbjct: 310 ALS----EAGSLSRWRMEVTERPDGVTIVNDAYNANPESMKAALRALAAM---GRGRRTW 362

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHY 426
           AVLG M E+G+ + + H  +  +    N+  +   G        + A  +       VH 
Sbjct: 363 AVLGRMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHV 422

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S+    + L ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 423 SDAQAAVDL-LRSELRPGDVVLVKASRSVGLESVAQALLE 461


>gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 460

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 233/470 (49%), Gaps = 29/470 (6%)

Query: 10  LLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           + QA+ G  +G  +V  G V     DSR       + A  G   DGH+FI  A+  GA  
Sbjct: 8   IAQAVNGKLLGADVVVSGSV---ETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVC 64

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEM 125
            +V    + +     I V      LG L K+ +  RLR+     I+ ITGSVGKTTTK++
Sbjct: 65  AIVTNPSIGNPEHTRILVEDATYALGLLAKVHIE-RLRATGDLRIVGITGSVGKTTTKDL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L+    T A + S+NN +G+PLT  +   +  + + E+G S +G + +LT LV P 
Sbjct: 124 TAGILAKFAPTVAPVASFNNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLTGLVSPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V  ++  AHL  F  +  +A AKAE+ EG+++ G + LN DD     ++  +H     
Sbjct: 184 LGVELSVGRAHLGGFGSVAGLARAKAELVEGVKENGLVILNLDDPNVAAMETVAH---TP 240

Query: 246 TIY--SFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTL 300
            +Y  + G  K AD   R     + S  S+ E    G+ +  VH G +G H   N L  +
Sbjct: 241 VVYFSALGNEK-ADIYARNVTLDEFSHASF-EAVTTGEVIP-VHLGLVGAHQVNNALAAI 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I      ++   + AL+    K     R     ++G  T ID+SYNANP SMKA ++VL
Sbjct: 298 SICQGFGLELPEIVAALNGM--KAASPHRMSIVESRG-ATFIDDSYNANPDSMKAGLAVL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
           ++   H   +RIAVLG+M E+GE S   H ++ E++    +  +   G    A + A+P 
Sbjct: 355 AKQGEHAN-QRIAVLGEMMELGETSAQLHQEVGEMVVATQVDLLITLGEG--AKEIAVPL 411

Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             ++ H H     + + L ++  +V GDVV +K SN  G +++ +  + E
Sbjct: 412 TEKTTHFHAGSVAEAVKL-LEEKVVAGDVVFLKGSNGSGVWKVADKFVAE 460


>gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
 gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae]
 gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
          Length = 428

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 223/438 (50%), Gaps = 29/438 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +SID+R I     FFAIKG ++D + F   A+  GA  VV++ +    I   +I V   +
Sbjct: 16  LSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYF-IDDRTILV---N 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +L+   R   K  I+A+TGS GKTTTKE++ + LS   KT A IG+ NNHIGV
Sbjct: 72  NSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL     + + GI E+G +H  EI FL  + +P    IT    AHL  F G++ +   
Sbjct: 132 PLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGYITNFGKAHLEGFGGVQGVIEG 191

Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS 267
           K+E+++ L K   T+F+N +D           + GIK  ++FG +K +AD +++      
Sbjct: 192 KSEMYQYLLKNNKTVFVNLEDPI-----QIEKSTGIKN-FTFGVNKESADLKIKNI---- 241

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGR 326
            Q+   V ++ +  +V  H IG + A N+   + I      + D  IK A+  + P   R
Sbjct: 242 -QANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVE-DALIKEAIENYIPANNR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     L +G   +I ++YNANP+SM  AI+   Q+       +I +LGDM E+G  S 
Sbjct: 300 SQ----LLKKGSNEIILDAYNANPSSMAVAITNFLQLENQ---NKIMILGDMFELGNESH 352

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + + LS  N S  +L G    +  +    + ++ + ET D    ++++     + 
Sbjct: 353 EEHKAIVDSLSNQNKSKCYLIG---KSFYENKISNENIQFYETFDAFAAYLKTIEFKDNT 409

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      R ++ +
Sbjct: 410 ILIKGSRGMALERTLDYI 427


>gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Clostridium botulinum H04402 065]
          Length = 462

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 230/471 (48%), Gaps = 33/471 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V +++  S G +  S  V  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIV-SEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  ++   +P
Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMSEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241
            IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K   
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298
                +Y  G  K  DF        +E    ++  QGK+      G+   G H   N L 
Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKC-FGVNVPGKHNVLNSLT 295

Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKA
Sbjct: 296 AIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI V+  I      R IA+LG M E+G      H +++E      I  ++  G    A K
Sbjct: 349 AIDVMKNIKGK---RTIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYK 405

Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 406 EGFEEINKENYKSFLNNQEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
 gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
          Length = 425

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 216/437 (49%), Gaps = 29/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I     FFA+KG +++G+++   A++KGA   +V+ +  A+    S     V 
Sbjct: 16  VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYAT----SDKTILVK 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L KLA   R    A +I +TGS GKTTTKE++   LSS  KT A IG+ NNHIGV
Sbjct: 72  DVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +H  EI FL  L +P    IT    AHL  F  +E +   
Sbjct: 132 PLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNFGKAHLEGFGSVEGVIEG 191

Query: 210 KAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++  L    +IFLN DD     ++ K     IK  Y F  +K   F+++       
Sbjct: 192 KSELYDYLLANQKSIFLNADDP----IQHKKLGHYIKK-YGFTTAKKEYFKIKFL----- 241

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S   V L  + +E+    IG +   N    + +      +++    A+  + P+  R +
Sbjct: 242 ISDPYVSLSVEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDIKTAIESYIPQNNRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +      +I ++YNANP SMK A+   + +S  GE  +IA LGDM E+G  S   
Sbjct: 302 ----IIESNGTRIILDAYNANPTSMKVALENFNSLS--GE-PKIAFLGDMFELGATSNEE 354

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDVV 447
           H ++A++ S  +IS V+L G +    K  L +       +  + L L++    L     +
Sbjct: 355 HQNIADLTSSLDISEVFLVGDNFYRTKTPLKK------FKNYEALALYLADVELPSNSTI 408

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      RL+ LL
Sbjct: 409 LIKGSRGMALERLLELL 425


>gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
           algicola DSM 14237]
 gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
           algicola DSM 14237]
          Length = 436

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 214/437 (48%), Gaps = 30/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           IS D+R +     FFA+KG ++DG+ +   A++ GA   V++ +  A S  ++ +P    
Sbjct: 28  ISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDATILVP---- 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL  L +LA   R   K  +IA+TGS GKTTTKE++   L +  KT A +G+ NNHIG
Sbjct: 84  -DVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVGNLNNHIG 142

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  D +  I E+G +H  EI FL ++  P    IT    AHL  F   E +  
Sbjct: 143 VPLTLLAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGYITNFGKAHLEGFGSFEGVIK 202

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E+++ L+K    IF N DD   EL   K      K  +S   S   + QL++     
Sbjct: 203 GKSELYDYLQKDEKPIFFNADD---ELQANKLSNYINKFGFSETDSHYYNIQLKEADPF- 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 VQ+  ++ E+V + IG +   N    + +       +D     +  + P   R 
Sbjct: 259 ------VQIIFENQEIVSNLIGAYNFINCCAAIIMGKYFNVSIDQIKNGIERYIPSNNRS 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     L Q    +I ++YNANP+SMKAA+   S++      ++I  LGDM E+G  +  
Sbjct: 313 Q----VLTQNTNEIILDAYNANPSSMKAALDNFSKLKT---TKKIVFLGDMFELGSTAPE 365

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +AE+ S  N +  +L G +     D     +    S   + L +F++++      +
Sbjct: 366 EHQHIAELTSALNFTEAFLIGENF----DVTTSDLKTFKS--FNELAVFLKTNTFKDASI 419

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      R+++LL
Sbjct: 420 LIKGSRGMALERVLDLL 436


>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
 gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
          Length = 469

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 149/488 (30%), Positives = 225/488 (46%), Gaps = 61/488 (12%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   + QA+ G  H  G      +  I+IDSR +A    F AIKG   DGHDFI    +
Sbjct: 4   MTLRAMTQAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIGQCFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+   ++     S       V+  L AL  LA+  R      ++ ITGSVGKT+T
Sbjct: 64  KGAACVISEKELPDEEHSY----IQVESSLQALKDLALLYRNNLDVKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE ++  LS   +    +G++NN IG+PLT+ R+  D +  + E+G+S  GE+  L+ + 
Sbjct: 120 KETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRLSKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT I   HL N    + I  AK EIF  +   G + LN DD   + L   S   
Sbjct: 180 QPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNPDGIVILNGDD---DKLSTISQVH 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------------- 288
           G + +  FG S          K         + L G S  +  HG+              
Sbjct: 237 GKRPLV-FGISNKDGVYADNIKS--------LGLDGTSFTI--HGLDTADKYSTFDMTVP 285

Query: 289 --GYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+HM  N +    + S+L   + +++  ++ L       GR       + +  FT+ID
Sbjct: 286 VPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTI---AGRNN----IIKENGFTIID 338

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + YNANP SMKA++ VL        GR++A+LG M E+GE  +  H D+   L   +I  
Sbjct: 339 DCYNANPVSMKASLDVLDTAI----GRKVAILGSMFELGENEKQMHYDVGMYLGTKDID- 393

Query: 404 VWLSGFHVLALKDALPRS----------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V ++   + A   A  R+            VH  ET D +   I   L  GD +++K+S+
Sbjct: 394 VLITAGDLAAQIAAGTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIKASH 453

Query: 454 SCGFYRLI 461
              F +++
Sbjct: 454 GMEFSKVV 461


>gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2]
          Length = 471

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 226/463 (48%), Gaps = 63/463 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S D+R+I     + A+KG +++GH+F   A   GA  ++ +  +     ++SIPV 
Sbjct: 24  VSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGASAIIASEPV-----NVSIPVV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL  L  A +       IAITGS GKTT KEM    L       A  G++NN 
Sbjct: 79  YVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEMCAAILERRGSVLATNGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    ++ + ELG +HLGEI + T+LV+P +A I   A +HL  F  +  +
Sbjct: 139 IGVPLTLLRLEHHHEYAVMELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRK-- 262
           A AK+EIF+GL  +GT  +N D  F +  + K   L  K + +F   +   ADF      
Sbjct: 199 ARAKSEIFKGLGDSGTAIVNVDSQFADFWQGK---LKQKRVLTFSPMQKNEADFTAEDII 255

Query: 263 --------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                   ++ CS +    +QL      ++    G H   N+L+   +   L A ++   
Sbjct: 256 VGLDGCAAFQLCSNEGEAAIQL------IIP---GIHNVGNVLVAAALTMQLGATLENVR 306

Query: 315 KALSVFHPKEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             L      +GR      G + R         L+D++YNAN AS+ AAI  LS  S    
Sbjct: 307 DGLLAMKQVKGRLNVKTLGSQVR---------LLDDTYNANVASVNAAIDTLSTFS---- 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVL-----ALKDALPRS 421
           G  + +LGDM E+GE ++ +H    E +  Y +S    +L  F VL     A+ DA P  
Sbjct: 354 GINVLILGDMKELGEKARFYH----EQVGNYALSKGIDYLYSFGVLSQSASAVFDAAPGK 409

Query: 422 IHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLI 461
              H+++ +D L   ++  L     D+ ++VK S S    R++
Sbjct: 410 NGEHFTD-IDSLVSALEQDLQVEQQDISILVKGSRSSRMERVV 451


>gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
 gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
          Length = 452

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++VN  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVNRPL-----DIDLPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ HI + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
 gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
          Length = 449

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 211/446 (47%), Gaps = 23/446 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++ I  DSR +     F  + G   DGH+F   A +KGA     +   +     L I
Sbjct: 19  QTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQAQEKGAIAAFWSHPTIQPPEGLMI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               V D L A  KLA   + +    +IAITGS GKTTTK+M+   ++   KTY   G++
Sbjct: 78  --IEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKTTTKDMVDAVVAQQFKTYKTQGNH 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+   P D +  + E+GM H GEI  L+HL +P +A IT I  AH+ N    
Sbjct: 136 NNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSHLAQPDVAAITLIGEAHIENLGSR 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL+  G   +  D+       A+      + + +FG  +  + +    
Sbjct: 196 EGIAKAKMEITAGLDPAGFFMIPADEPLLTPYLAEL----TQQVETFGLGE-GNLKGTIQ 250

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++  EQ+   V  Q  ++ V    IG +  +N L+ +GI   L  + +     L+ F   
Sbjct: 251 EETQEQTAFTVADQVYTIPV----IGGYNVKNALIAIGIGRYLGIEEEKIKAGLADFQLT 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R +  + A       ++ + YNANP +M   +    ++     GRRIAVL DM E+G 
Sbjct: 307 KNRTQWLKAANGAA---ILSDVYNANPTAMGLVLDSFRKLPLT--GRRIAVLADMLELGP 361

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQ 438
            S   H  +A+ L       ++L G  + ALK AL +S     +H    E    L   +Q
Sbjct: 362 DSAKMHAGMADHLD-ERFDLIFLYGSEMQALKRALDQSRLADRVHFFSKEEKAALITQLQ 420

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
             L   D +V+K SN  G   +I+ L
Sbjct: 421 KELQPTDSIVLKGSNGMGLVEVIDSL 446


>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 205/407 (50%), Gaps = 37/407 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GISID+R+I   + F   +G H +GH F++ A +KGAG  +   D          P+ 
Sbjct: 24  VSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGAGASLWQKDEPNP--PEGYPLL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL ++A A R   KA  I ITGS GKT+TK++L   L+   K    IG++NN 
Sbjct: 82  FVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGNFNNQ 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+P+T+ ++  D D  + E+GMS  GEI FL+ L RPH+ VIT I  AH+ +      I
Sbjct: 142 LGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSKLARPHMTVITNIGEAHMQDLGSRAGI 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-----GIKT---IYSFGKSKNADF 258
           A AK EI +G++  G +F + D+   + L AK   L     G+++   +Y+     NAD 
Sbjct: 202 AKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQHLQSVPFGLESNNLLYADNIHANAD- 260

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
                   +    ME    G     V   +G H  +N L+ + I   + +    + T+++
Sbjct: 261 ----GSHFTTHGMME----GDFFISV---LGRHQVKNTLVAMLISHKLGLSNEQIRTSLE 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIA 373
            + +         R +  L       I+++YNA P S+KAAI  +  S I P     +  
Sbjct: 310 HVVL------TDMRMQQILGTNGALFINDAYNAAPTSVKAAIQFMATSTIRP----EKWL 359

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           VLGDM E+G   + FH  LAE ++   I +V L G  +L L   L +
Sbjct: 360 VLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYKILEK 406


>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 458

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A    V T  V  + +   ++PV  V+D L AL  LA   R +    +I +TGS GKT+T
Sbjct: 65  A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L 
Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +
Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237

Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ 
Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   + L         G R          T+I+++YNA+P +M+AA  +++
Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417
            +   G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +     
Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            P    V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457


>gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
 gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
          Length = 452

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 216/448 (48%), Gaps = 26/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I P   F A+ G  +D HDF  +AV+ GA  ++V+  +       S P  
Sbjct: 24  IEQVSTDTRTIEPGSLFVALVGERFDAHDFASNAVEAGASALLVSKAL-----DCSTPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL K+        +   +AITGS GKTT KEM+   + +  +     G++NN 
Sbjct: 79  LVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + DF + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQLVQPDIAMVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRK--W 263
             AK EI++GL+      +N D    E  +     L  K +  F  S + ADF  R    
Sbjct: 199 KQAKGEIYQGLKPGSVAIVNLDSHGGEYWQ---QVLADKRVVHFSVSDDSADFFARNITM 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E S+  V  QG +  V    IG H   N L    +   L A ++     L   H  
Sbjct: 256 STAGEASFELVSRQG-TFSVELGIIGQHNVANALAASALAFELGATIEMVQSGLK--HLA 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+    +L     TLID+SYNA+  +MKAA  +LS       G R  +LG+M E+G+
Sbjct: 313 KVKGRVESVSLTDK-ITLIDDSYNASVPAMKAAADLLSSFG----GVRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +   HV   G    A   A+       + +T + +  FI+  L +
Sbjct: 368 ESLALHRQVGEHAAPFKFEHVLTFG----ADAKAISEQCQGKHFDTHESMIEFIKQQLAN 423

Query: 444 ---GDVVVVKSSNSCGFYRLINLLLEEF 468
                 ++VK +NS G  ++   L E +
Sbjct: 424 HNGAQTLLVKGANSAGMSKIAAALKEMY 451


>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
 gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
          Length = 466

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 217/457 (47%), Gaps = 33/457 (7%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P  +   +  D+R++ P   F A+ G  +D H F+  A + GA   VV         
Sbjct: 21  GPAPAAYAT-VCTDTRALTPGCLFVALVGERFDAHAFVDAAAKGGAAGAVVARGRPLPAL 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              + ++ VDD L AL  L    R R +  + A+ GS GKTTTKEM+   L++       
Sbjct: 80  PDGLTLYEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKTTTKEMVGAILATRGPALKT 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IGVPLTL R+       + E+GM+  GEI  L  +V+P   VIT + P HL  
Sbjct: 140 EGNLNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLARVVQPDAGVITVVQPEHLEG 199

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              IE +A+A+ E+F+ +    TI +N DD+   L+ A++   G + + +FG++++AD +
Sbjct: 200 LGSIEGVAAAEGELFQEMGHGTTIVVNVDDA---LIPAQAERSGAQRL-TFGRAEHADVR 255

Query: 260 LRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           L   K    +  +  V+  G+   V  H +G H AQN      +   L    +  ++ L 
Sbjct: 256 LADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAAFAVALALGYTPEECVRGLE 315

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P     +R      Q   T+ID+ YNANPASM AA+  L  + P   GR + VLGDM
Sbjct: 316 SARPYS---RRLNVVDGQHGVTVIDDCYNANPASMDAALETLGTLVP-ASGRAVVVLGDM 371

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----------VHYS 427
            E+G      H  L   +     SH  L+ F         PRS+             H++
Sbjct: 372 LELGPGELEEHARLGGQIP----SHAALAAFFG-------PRSLKGWEAASMGESAAHFT 420

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + ++ L  ++   L +GDVV+VK S      R++  L
Sbjct: 421 D-VEPLMAWLAPRLREGDVVLVKGSRGMRLERVVAAL 456


>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
 gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
          Length = 468

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 153/488 (31%), Positives = 227/488 (46%), Gaps = 58/488 (11%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   + G     V   F V GI+ D+R++   E F A++G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           + A+ KGA   VVN +   S      P+  V D L A   LA + R R    II +TGSV
Sbjct: 61  VAAIAKGALCAVVNREFAVS--HPEFPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+    L+  
Sbjct: 179 LTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNR--RLMST 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVHHGIGYH 291
            +      TI ++G                E   ++ +L G        +E+     G H
Sbjct: 237 ATQVWSGTTI-TYGL---------------EGGILQGELLGHETIRVAGIELPLPLPGSH 280

Query: 292 MAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            A N L  L ++  +     +A +        LS+  P +GR KRY  A +     L+DE
Sbjct: 281 NASNFLAALAVLRAIAGWETSAEELYAPLSTGLSLQMP-QGRAKRYHLAQD---ILLLDE 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNA   S  AA+ +L++   +   R IAVLG M E+GE S  FH  +       N+  +
Sbjct: 337 TYNAGLESTLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGL 393

Query: 405 WL-----------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           ++            G  V+   D         +   +D +  F++     GD V+ K+SN
Sbjct: 394 FILADLAEAQAMAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKP----GDRVLFKASN 449

Query: 454 SCGFYRLI 461
           S G  R++
Sbjct: 450 SVGMNRVV 457


>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
 gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
          Length = 458

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A    V T  V  + +   ++PV  V+D L AL  LA   R +    +I +TGS GKT+T
Sbjct: 65  A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L 
Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +
Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237

Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ 
Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   + L         G R          T+I+++YNA+P +M+AA  +++
Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417
            +   G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +     
Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            P    V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVIMML 457


>gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 451

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/385 (34%), Positives = 190/385 (49%), Gaps = 27/385 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV  GA  +
Sbjct: 8   DLAQVLDARLIG--EDGEITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAVAAGASAL 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V  ++     SL+IP   V D L  L  +    R R    ++AITGS GKTT KEM T 
Sbjct: 66  LVEREL-----SLAIPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTTVKEMTTA 120

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    +  A  G++NN +GVPLTL R+     F + ELG +H GEI + T L RP  A+
Sbjct: 121 ILRHEGEVLATAGNFNNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSLARPDAAL 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D +F+     K  A GI   +
Sbjct: 181 INNVAAAHLEGFGSLEGVFHAKSEIFEGLSEQGTAIVNADSAFW----PKWQAAGIHCAF 236

Query: 249 SFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           S  + +N  F  R      + C+E  ++ V   G+ + +     G H   N L       
Sbjct: 237 SI-EDQNQPFHARGIALNGQGCAE--FVMVTPNGE-LSLTLAIPGRHNVANALAAAAGCL 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A + +    L    P +GR     C    G  TL+D++YNA+  S+ A I  L+ + 
Sbjct: 293 ALGASLASVKAGLEQMAPVKGR----FCVQRWGGLTLVDDTYNASVESVLAGIDALTAMG 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389
               G ++ V GDM E+GE S   H
Sbjct: 349 ----GYKVLVFGDMKELGEESAEQH 369


>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
          Length = 455

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 218/459 (47%), Gaps = 29/459 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA   +        
Sbjct: 15  SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+   LS     +
Sbjct: 74  --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP + VIT I  AH+
Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   ++IA AK EI + L++ G    N D+   E   AK             K + + 
Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239

Query: 258 FQLRKWKQ---CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           F  R+       + +S+M     ++ G + +     IG H   N L  + +      + +
Sbjct: 240 FGFREEDTVFATTFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL+ F P   R +  +  + +    ++D+ YN+NP ++KA  +   Q+     GRR
Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPIAVKAVTTSFGQVMVEDGGRR 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426
           IAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       ++H + 
Sbjct: 357 IAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPAENLHYYP 416

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes shahii WAL 8301]
          Length = 417

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 207/437 (47%), Gaps = 35/437 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA++G  +DG+ F+  A++KGA   V +   VA+       V  VD
Sbjct: 14  ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQRIVL-VD 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R      I+AI+GS GKTTTKE+++  L+   + YA  G+ NNHIGV
Sbjct: 73  DTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M  D +FG+ E+G S  GE+  L  +  P+  ++T I  AHL  F G E +   
Sbjct: 133 PLTLLAMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNIGLAHLEGFGGPEGVRRG 192

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+F+ L   G   F+  DD     + A+  +L             AD    ++   S 
Sbjct: 193 KGELFDFLAANGGHAFVPADDEILTGMAAERDSL-------------AD----EYYSASL 235

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +E  L+G            +   N+   + +        +    A++ + P   R +
Sbjct: 236 ADGIENHLEGS-----------YNRFNIAAAVAVGRYFDVPDERIRHAIASYVPDNNRSQ 284

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R   + N    TL+ + YNANP+SM+A++            RR+ +LGDM E+G+ S+  
Sbjct: 285 RIGTSRN----TLVADCYNANPSSMRASVGNFLAEPLEERQRRVLILGDMLELGDWSERE 340

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  + E+ +    + + L G       D L  +  +V    T D L   ++ S V+  +V
Sbjct: 341 HAAIIEMAAQDPEAELLLVGPEFAKAYDGLAEKPANVTLCPTRDDLISLLKVSPVEHSLV 400

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK S+  G  + +  L
Sbjct: 401 LVKGSHGMGLEQALEAL 417


>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
 gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
          Length = 473

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 215/465 (46%), Gaps = 55/465 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+  DSR+I P   F  I G  +DGH+F+   +  GAG      D       L  P+
Sbjct: 26  IIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASGAGAAFWQRDHQPVPADL--PL 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL  LA      S+A ++ ITGS GKTT K+M++  L +    +   G+YNN
Sbjct: 84  ILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKDMVSALLETTYNVHKTQGNYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  M  D D  + E+GMS   EI  L+++ RP + VIT +  AHL      EE
Sbjct: 144 HIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREE 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNAD----- 257
           IA AK EI  G++  G +  + D+     + A+   +   G++T Y+FG     D     
Sbjct: 204 IARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKPEGLRT-YTFGNQDTNDDYPTG 262

Query: 258 --FQLRK---WKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIV 303
             F  R      +        + L G+              H GIG    ++    L + 
Sbjct: 263 LMFHARGIIFTSRLHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFAHLKLS 322

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S+    V+TA                          T+++++YN++P ++KAA+ VL  +
Sbjct: 323 SMRIEAVETAFG-----------------------VTVLNDAYNSSPTAVKAAVDVLGDM 359

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDALP 419
              G  RRIAVLGDM E+G+  +SFH ++ + LS  N   V+  G   L      K   P
Sbjct: 360 K--GYRRRIAVLGDMLELGQREESFHAEIGDYLSPDNADLVFTYGPLSLHTANKAKARFP 417

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               + +++  + L   +   + + D+V+VK+S       +++ L
Sbjct: 418 EGAVLSFTDK-EKLIEALLEQVTEKDIVLVKASRGMRLEHVVDAL 461


>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 459

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 231/476 (48%), Gaps = 47/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A +G+ I   P+   N +SID+R +     + AIKG ++DG+DF++ A+ KGA
Sbjct: 5   TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64

Query: 66  GLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L +++         L+   +  V++   AL +LA   R +    +I +TGS GKT+TK+
Sbjct: 65  ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  ALS   K +   G++NN IG+PL +  +    D  + E+GMS L EI+ L+ + RP
Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+ N    E I  AK EI     K   + +N+DD +   +    + L I
Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-I 243

Query: 245 KTIYSFGKSKNADFQ----LRKWKQCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K   S    KN D +    + K   C     +S   + + GK           H   N L
Sbjct: 244 KA--SISDDKNIDLKGESLVLKEDSCEFKLNESKFYIPMPGK-----------HNISNAL 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + +     L  +     K    F   E    R     N+G  T+I+++YNA+P SMKAAI
Sbjct: 291 LAIACARELGVEDQLINKG---FLNIEATSMRLDIEKNKG-ITIINDTYNASPDSMKAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHVWLSG 408
            V+  +      RRIAV+G M E+GE S  +H ++           ++++   +  +  G
Sbjct: 347 EVMKNLKGK---RRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGEFAKAYSEG 403

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           F+         ++  +  +E  +G   ++ S + + D+++VK+S S  F  ++  L
Sbjct: 404 FN--------NKNSSIELAEK-EGAIAYLTSEIREEDIILVKASRSMKFETIVEAL 450


>gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum WCFS1]
 gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
 gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum WCFS1]
 gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
          Length = 462

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 29/453 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G++ DSR +   + F  + G + DGH +I  A++ GA   +  +D    +    
Sbjct: 22  PDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGAVATLWASDHADDVPE-D 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYAC 139
           +PV  V D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KT+A 
Sbjct: 80  LPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVLSTQFNVTKTHA- 138

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+P +AVIT I  AH+  
Sbjct: 139 --NFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEF 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   + IA AK EI  GL++ GT   N D+   +  +AK  +   +T   FG        
Sbjct: 197 FGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQ-ERAKEVSQHQRT---FGLDDTNTLA 252

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                    Q+  +  L   +   +   +G +   N L  L +          A +A++ 
Sbjct: 253 GSDITTSRAQTQFKTSLWPDNTYTIPM-MGAYNVNNALAALLVADTFHIRPAAAQQAIAS 311

Query: 320 FHPKEGRGKR---YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           F P E R +    YR         ++ + YN+NP + +  ++  + +    +G+RIAVLG
Sbjct: 312 FVPTENRTEWLTGYRGE------AILSDVYNSNPTAARRVLAAFAAVP--TKGQRIAVLG 363

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431
           DM E+G+ S + H+ LA  L    I+ V+L+G H+ AL + L       ++H + ++   
Sbjct: 364 DMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQP 423

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            L   + +++   D V++K S+     +++  L
Sbjct: 424 QLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 456


>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 455

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 206/431 (47%), Gaps = 17/431 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +             I V 
Sbjct: 24  ITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PEGIAVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++NN 
Sbjct: 81  EVDDPLAAMQTLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L RP +AVIT I  AH+  F   ++I
Sbjct: 141 IGVPMTVLEMKPNTEILVLEMGMDRPGQLHHLSELTRPDVAVITMIGEAHIEFFGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L + G    N D+    LL+ ++  L  +   +FG   +       +K  
Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFEDDDTVHATGFKSY 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   +    +   +    IG H   N +  + +        +    +LS F P   R
Sbjct: 257 MHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANR 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +  + +   + I   YN+NP +++A I+   Q+     GRRIAVLGDM E+GE S 
Sbjct: 315 MEWEKGDVGEAIMSDI---YNSNPTAVRAVITSFGQVEVKDGGRRIAVLGDMLELGENSP 371

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHY--SETMDGLFLFIQSSL 441
             H +L++ L    I+ V+L G  +  L DAL     S H+HY   + MD +   +++ +
Sbjct: 372 KLHAELSDTLDPQIINEVYLYGPEMKNLYDALQGKYESEHLHYYTKDQMDRMIDDLKNDI 431

Query: 442 VDGDVVVVKSS 452
              D+VV+K S
Sbjct: 432 KSDDIVVLKGS 442


>gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
 gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
          Length = 456

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 193/394 (48%), Gaps = 28/394 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF +L QA+    +        +G+SIDSR+I P + F A+ GP +DGHD++     KGA
Sbjct: 6   TFSELSQALSARVLS--SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDVAAKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V  ++  S    ++P   V D   AL +L    R      + A+TGS GKTT KE+
Sbjct: 64  VGALVQCEVPES----TLPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKTTVKEL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L +     A  G+ NN  G PLTL  +  +    + ELG S +GEI +   L +PH
Sbjct: 120 LAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+I     AH+  F G E+I  AK EI EGL+ +GT  LN DD  FE  +A+  A G K
Sbjct: 180 VAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRAR--AAGRK 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVS 304
            +     +  ADF           S + V  +G     +H   G    Q N+L    + +
Sbjct: 238 VLTFAVLNAAADFH---------ASDITVDARGCPSFTLHTPQGREPVQLNLLGNHNVAN 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGK------RYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L A        +S+F    G G       R    L      +ID++YNANP+S+ AA+ 
Sbjct: 289 ALAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANPSSINAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +L       +GR++ VLGD+ E+GE ++  H ++
Sbjct: 349 LLKGF----DGRKVLVLGDIGELGEWAEQGHREV 378


>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
 gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
          Length = 458

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 202/389 (51%), Gaps = 24/389 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S D+R+I     +  ++G  ++GHDF+  A QKGA  V V            +PV 
Sbjct: 27  VSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGA--VAVLWAEREGTPPEGVPVV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA   R +    +I +TGS GKTTTK+M+   LS+  +     G+ NNH
Sbjct: 85  VVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLSTHYRVQKTEGNLNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +    +  + E+GMS  GEI  LT + RP  AVIT I  AHL      E I
Sbjct: 145 IGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWK- 264
           A AK EI  GL   G +F+ + D    LL  +   L + + + +FG  +  D+     + 
Sbjct: 205 AKAKLEILAGLHHDG-LFVYHGDE--PLLTERVPKLSLPRHVVTFGAGEQNDYYPTDVRI 261

Query: 265 QCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSV 319
           +    S++   L G++  M V    +G H   N L  + +      D   +D A+  L V
Sbjct: 262 EAGGTSFVINALPGRTLFMPV----LGKHHVYNALAAIAVARFFGIDWEGIDAALSRLQV 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R      +  FT+I+++YNA+P SM+AA+ +L ++S  G  ++IAVLGDM 
Sbjct: 318 TR------MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQELS--GYRQKIAVLGDML 369

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           E+G+   +FH ++ EVL    + +V+  G
Sbjct: 370 ELGDEEVAFHREIGEVLRPGMVDYVFTYG 398


>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
 gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
          Length = 458

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 223/451 (49%), Gaps = 37/451 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88
           I+ D+R I   + F A+ G ++DGH FI  A++KGA +V++  + +V S   +S  V G 
Sbjct: 32  INTDTREIQKGDVFIALSGKNFDGHLFIREAIEKGASIVILEQEALVNSTYKVSHIVVG- 90

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              L A  ++A   R + K  IIAITGSVGKTTTKE++  +L    + +    +YNN IG
Sbjct: 91  -SALKAYQQIANWWRNKYKIPIIAITGSVGKTTTKELIAASLGMYGQVHKTYDNYNNEIG 149

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL ++    D+ + E+GM  L EIR LT +++P I +IT I  AH+      E IA 
Sbjct: 150 VPRTLLKLSKHHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQ 209

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WK 264
           AK E+   +       LN DD   ELL        +KT     K K   + L K     K
Sbjct: 210 AKCELLSEMSLDSIAILNNDD---ELL--------MKTAMRIWKGKTITYGLNKGDIIGK 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++++   ++++G +  +     G H A N L  L +   L  D     K + V  P +
Sbjct: 259 LINDRT---LRVEGLNFPLPLS--GRHNAINYLAALAVTKSLNLDWKKFTKQIKVEMP-Q 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR ++       G   L+DE+YNA   SMKAA+++L         R IAVLG M E+G  
Sbjct: 313 GRSQKNYLP---GDIILLDETYNAGLESMKAALNMLKDTPGK---RHIAVLGAMKELGVN 366

Query: 385 SQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLFI 437
           S  FH ++ E      I   ++ +      A+ + +      R+I V    + + LF  +
Sbjct: 367 SSQFHREVGETAQALGIDVLYILIRDEEARAIPNGIKNIDGVRNIKVICCLSPEKLFEQL 426

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + +GD ++ K+SNS     L+  + + F
Sbjct: 427 INDISEGDRILFKASNSVKLKSLVEQICKYF 457


>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
 gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
          Length = 458

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P
Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITML 457


>gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 488

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 216/465 (46%), Gaps = 43/465 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           GI P   V     DSR   P   + A  G H DGHDFI  A + GA L +V        G
Sbjct: 22  GITPTSVVT----DSREATPGSLYVAKPGEHADGHDFIAAAFESGAVLALVERPAARPDG 77

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLR---------SKATIIAITGSVGKTTTKEMLTIAL 130
           S S P   V+D + A+  LA  A  R          + T++ ITGS GKTTTK++L    
Sbjct: 78  S-SYPSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELTVVGITGSAGKTTTKDLLAGLF 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +S   T A  GSYN  +GVPLT+ +      + + E+G + +G IR+L  +V+P I V+ 
Sbjct: 137 ASQGSTVAPKGSYNGEVGVPLTVFQADEGTRYLVIEMGATGIGHIRYLADMVKPDIGVVL 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH   F G++ IA AK E+ EGL   GT  +N DD     +++++ A    T+  F
Sbjct: 197 AVGTAHAGEFGGVDNIALAKGEMVEGLSADGTAIINLDDDRVAAMRSRTTA----TVLGF 252

Query: 251 ---GKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNML---MTLGI 302
              G+   A   L            ++QL G      V    IG H   N+L        
Sbjct: 253 SAEGRGGAAVQALSADTNEHGNPEFDLQLPGSDGPQHVASKLIGAHHTGNLLAAAAAAFA 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVL 360
             +  AD+   +        K+    R+R    +     T+I+++YNANP SM+AA+  L
Sbjct: 313 AGMSGADIAAGLS-------KQSAASRWRMERTERADGVTVINDAYNANPESMRAALRTL 365

Query: 361 SQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +   G GRR  AVLG M E+G+ S   H  +   +   NIS + + G    AL  +  
Sbjct: 366 ADL---GRGRRTWAVLGAMLELGDDSIREHTAVGTQVVRLNISRLVVVGREARALYVSAV 422

Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +         ++E  D  +  + + L  GD+V+ KSSNS G   L
Sbjct: 423 QEGSWGDECLFAENPDEAYELLNAELEPGDLVLFKSSNSVGLRHL 467


>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
 gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
          Length = 456

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 26/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ IDSR + P   F AI G   + H FI   V+ GA  VV + D+    G    P  
Sbjct: 28  VSGVVIDSRKVQPGYLFVAIDGERVNAHKFIPDTVKAGAMCVVSHEDL----GETDFPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+    AL  +A   R      ++ ITGSVGKT+TKEM+   L+     +  +G++NN 
Sbjct: 84  LVESTGQALLDIAKLYRDSFDMKVVGITGSVGKTSTKEMIASVLAQKYHVHKTLGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            G+P+T+  MP D +  + E+G++H GE+R L+ +  P I VIT I  AHL  F   E I
Sbjct: 144 WGLPITIFDMPEDTEVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-Q 265
              K+++ + ++  G+I LN DD   +LL   S   G+  ++ FG   N  F+    + Q
Sbjct: 204 LQEKSQMIQDMKNGGSIILNGDD---DLLSKMSPVKGVTPVF-FGMGDNCAFRADNIEPQ 259

Query: 266 CSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNML--MTLGIVSILTAD-VDTAIKALSVFH 321
               +   + L+ G S + +    G HM  N +    +G    LTAD +   I++L    
Sbjct: 260 GLRGTSCTITLKDGSSFDCLVPVPGIHMVSNAVAGAAVGYTLGLTADEIKAGIESLPSI- 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR       +      ++D+ YNANP SMKA+I VL+       GR++AVLG+M E+
Sbjct: 319 --PGRNH----IIETDHMIILDDCYNANPISMKASIDVLNM----AIGRKVAVLGNMGEL 368

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQS 439
           G+ +++ H ++    +  N+  V   G    +L +   +  +    +    +     I  
Sbjct: 369 GDTAEALHAEVGTYAAEQNVDLVCGIGDLTRSLVEEASKGANTEALWFADNESFIQAIPD 428

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + DGD V+VK+S+   F ++++ L E
Sbjct: 429 IIKDGDNVLVKASHGMNFPQIVHALEE 455


>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
 gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
          Length = 468

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 226/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 21  QMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 80

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 81  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 139 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 198

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 199 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPGMNLAAETV-TF 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I        
Sbjct: 257 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 315

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 316 EEMKEGLVTL---QMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 370

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G+    FH ++ +++    ISHV+  G     + +      P    V  
Sbjct: 371 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 429

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 430 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 467


>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 468

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 224/451 (49%), Gaps = 29/451 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           I+ D+R +   + F A++G H+DG  F   A+++GA  V+V+    A+ + +L     GV
Sbjct: 31  ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90

Query: 89  ---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +D L A   +A A R++    ++AITGS GKTTTK++    LS   K      +YNN
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G+PLTL  +  +    + E+GM  +G+I  L  +  P I ++T +   H+     IE 
Sbjct: 151 EVGLPLTLLGITPEDTAAVVEIGMRGMGQIAALAPITAPSIGIVTNVCEVHMELLGSIEN 210

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AKAE+   +   GT+ LN DD     +++ S A G++ + ++G S  AD +    + 
Sbjct: 211 IAKAKAELVTAIPAGGTVILNADDPRVAAMRS-SAADGVR-VMTYGISAAADVRAEALQC 268

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFHP 322
            ++ S   V   G+  E      G H   N L  L    ++ +   ++   +  L+    
Sbjct: 269 MADGSRFMVTWDGERHEYAIPLPGRHNVSNALAALAAGFVLGMTPQEMQVGLTHLTA--- 325

Query: 323 KEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                ++ R  ++Q G +TLI+++YNA+P+SM+A++   + + P   GRRIAVLGDM E+
Sbjct: 326 -----EKMRYEVHQIGAWTLINDAYNASPSSMRASLETTAALYP---GRRIAVLGDMLEL 377

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLF 436
           G  ++  H D+    +    + V   G      H  A     P     +++ +      +
Sbjct: 378 GAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTHEAAEAAGCP---ACYHAASHADAAAY 434

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++S L+DGD V+ K S      ++I  L  E
Sbjct: 435 LRSHLMDGDTVLFKGSRGMRMEQIIAALTGE 465


>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/461 (29%), Positives = 225/461 (48%), Gaps = 22/461 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L  A  G  I        + I IDSR +     F  I G + D H F+      G 
Sbjct: 12  TVKELAAATGGELISGNENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAVYNSGC 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + + +   +      +I +  VDD   AL  L    R +    ++ +TGSVGKTTT+EM
Sbjct: 72  KVAISSKKDIFLKKDFNIVL--VDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKTTTREM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +ALS +K  +    ++N+ +GVP+TL+R+  D + G+ ELGMS   E+  +  +V   
Sbjct: 130 VALALSDLK-VFKTPNNFNSQVGVPITLSRIK-DEEIGVIELGMSKFDEMEKIAKIVNCD 187

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I  AH+ N    E I + K  I +G+++   +FLN D+   +LL       GI 
Sbjct: 188 CALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADN---DLLNNSPKREGI- 243

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IY F  +K N D +          +  E    ++GK++ V  +  G H   N L  L +
Sbjct: 244 -IYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVHLNVFGEHQISNALAALAV 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLS 361
                  +++A K L  F     RG  +R  L  +G  T+ID++YNA+P SMKA+IS+L 
Sbjct: 303 ADHYNLSIESAAKHLEDF-----RGFSHRQELIIRGGLTVIDDTYNASPDSMKASISILK 357

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPR 420
             +     R+IA+L DM E+GE  ++ H ++ + ++    +  V+  G     +   +  
Sbjct: 358 GFNAK---RKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGELAKEIISNINE 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           ++     E  + L  FI+  L DGDV ++K SNS   + ++
Sbjct: 415 NVLTKSFEDNETLENFIREYLKDGDVCLLKGSNSMKLFDVV 455


>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 455

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 218/459 (47%), Gaps = 29/459 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA   +        
Sbjct: 15  SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+   LS     +
Sbjct: 74  --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP + VIT I  AH+
Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   ++IA AK EI + L++ G    N D+   E   AK             K + + 
Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239

Query: 258 FQLRKWKQ---CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           F  R+       + +S+M     ++ G + +     IG H   N L  + +      + +
Sbjct: 240 FGFREEDTVFATTFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL+ F P   R +  +  + +    ++D+ YN+NP +++A  +   Q+     GRR
Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVRAVTTSFGQVMVEDGGRR 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426
           IAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       ++H + 
Sbjct: 357 IAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEENLHYYP 416

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
 gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
          Length = 458

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 209/434 (48%), Gaps = 28/434 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GI+IDSR++ P + F A+ G   DGH++I  AV  GA   +V   + A +     P  
Sbjct: 25  VSGITIDSRAVTPGDLFVALPGERVDGHNYIDAAVANGAIAALVEHPVDADV-----PCL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L AL+ +  A+R  S++ +IAITGS GKTT K +     +    T A  G+YNN 
Sbjct: 80  RVSSCLAALSDIGRASRDFSRSLVIAITGSCGKTTVKNLCRSIFTQAGPTVATAGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTLAR+  +  F I E+G +  G+I  L  L RP I  +     AHL  F  + ++
Sbjct: 140 IGVPLTLARLDDETRFAIVEMGATRRGDIAHLCALARPSITTVLNAMEAHLEGFGSVADV 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265
           A  KAEIF+GL   GT  LN D  +  L + +    G  T+ YS G  +  D  +   + 
Sbjct: 200 ADIKAEIFDGLGAQGTAILNLDQPWVSLWRERIARAGADTVSYSLG--EEGDITVADLRD 257

Query: 266 CSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              Q S   +++ G+   V     G H   N L    + +    D+ T +  L     + 
Sbjct: 258 LGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAAAALATAAGLDLGTIVTGLEQAEAES 317

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +      ++   TLID+SYNANP S++AAI +L+  +    G  + +LG+M E+GE 
Sbjct: 318 GRLRAESLGEDK---TLIDDSYNANPGSVRAAIDLLAATA----GNSLLILGEMLELGEE 370

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQS 439
           S   H ++        ++         + + DAL  ++        +  T D L   +  
Sbjct: 371 SAERHREMGARAREQGVT-------RFVGIGDALKPAVETFGSTGQWYPTRDALTAALPE 423

Query: 440 SLVDGDVVVVKSSN 453
            L   D ++VK S 
Sbjct: 424 LLEQSDTLLVKGSR 437


>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 454

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 7   QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 67  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 125 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 185 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 242

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I +      
Sbjct: 243 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 302 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G     FH ++ +++    ISHV+  G     + +      P    V  
Sbjct: 357 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 415

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 416 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 453


>gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
 gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
          Length = 459

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 221/441 (50%), Gaps = 17/441 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G++IDSR ++P + F A+ G   DGHDF+  A+ +GA   +V   +      +SIP   
Sbjct: 26  SGVAIDSRQVSPGDLFIALPGERVDGHDFVDAAIARGAIAALVERPV-----QVSIPCLQ 80

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + L AL+++  A+R  S + ++AITGS GKTT K +     S    T A  G+YNN I
Sbjct: 81  VSNCLDALSEIGRASRDLSASVVVAITGSCGKTTVKNLCRSIFSEAGSTVATAGNYNNEI 140

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTLAR+  D  + I E+G +  G+I  L  L RP I  +     AHL  F  + ++A
Sbjct: 141 GVPLTLARLQDDTRYAIVEMGATKRGDIAHLCTLARPSITTVLNAMEAHLEGFGSVADVA 200

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQC 266
             KAEI++GL  +G   +N D  +  L + +    G + + YS   S +AD  +   ++C
Sbjct: 201 DIKAEIYDGLGSSGAAIVNLDQPWVPLWRDRIAQAGAQALSYSLDDS-SADLYVSGLQEC 259

Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E S   + ++G+S  + +   G H   N L    +       +D  +  L     + G
Sbjct: 260 GLEGSAFTLHIRGESRALKYPLPGRHSVANALAAAALAIAAGLSLDQIVVGLEHAQAEPG 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R   ++   TLID+SYNANP S++AAI++L+  +    G  + +LG+M E+G  S
Sbjct: 320 RLQSERLGNDK---TLIDDSYNANPGSVRAAITLLAATA----GESLLILGEMLELGAES 372

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H ++ E+  L  I+     G  V    +A     +  +  + + L   +   L   D
Sbjct: 373 PERHAEMGELARLSGITRFVGVGEAVRPAVEAF--GANGQWFASREALTPKLADLLGASD 430

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
            ++VK S       +++ L E
Sbjct: 431 TILVKGSRGAAMESVLSALRE 451


>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I +      
Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 306 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G     FH ++ +++    ISHV+  G     + +      P    V  
Sbjct: 361 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 419

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 420 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 457


>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 190/385 (49%), Gaps = 29/385 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+SIDSR+I   + F A+ GP +DGHD++     KGA   +V  ++  S    ++P   
Sbjct: 26  SGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVPDS----TLPQLL 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL +L    R      + A+TGS GKTT KEML   L +    +A  G+ NN +
Sbjct: 82  VKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRGPVHATRGNLNNDL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL  +  +    + ELG S +GEI +   + RPH+A+I     AH+  F G E+I 
Sbjct: 142 GAPLTLLELAPEHTAAVIELGASRIGEIAYTVAMTRPHVAIINNAGTAHVGEFGGPEKIV 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----RK 262
            AK EI EGL+  G   LN DD  F + KA++     + + SF     +ADF      R 
Sbjct: 202 EAKGEILEGLDSAGIAVLNLDDKAFPIWKARAAG---RQVLSFALTDSSADFFASDIGRD 258

Query: 263 WKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            + C            K +E V  + +G H   N L        +   +   +  L+   
Sbjct: 259 ARGCPSFKLHSP----KGVEAVQLNLLGTHNVANALAAAAAAHAMGVSLFGIVTGLNAVQ 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +G   R    L +    +ID++YNANP SM AA+ +L+  S    GR + VLGD+ E+
Sbjct: 315 PVKG---RTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGFS----GRTVLVLGDIGEL 367

Query: 382 GELSQSFHIDL-----AEVLSLYNI 401
           GE ++  H ++      +V +LY +
Sbjct: 368 GEWAEQGHREVGAYAAGKVSALYAV 392


>gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)]
 gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces lividans TK24]
 gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
 gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           coelicolor A3(2)]
 gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
          Length = 471

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 209/449 (46%), Gaps = 36/449 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVDD 90
           DSR   P   F A  G   DGHDF    V+ GA         VA +GS  + +P   VDD
Sbjct: 34  DSREAGPGSLFVAFVGERADGHDFAARVVEAGA---------VAVLGSRPVGVPAIVVDD 84

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  AL  LA     R   T++A+TGS GKT+TK+++   L     T    GS NN +G+P
Sbjct: 85  VQAALGALARHVVRRLGTTLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLP 144

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT      +  F + E+G   +G IR+LT L  P I  +  +  AH+  F G E+IA AK
Sbjct: 145 LTALTATDETKFLVLEMGARGIGHIRYLTELTPPKIGAVLNVGSAHIGEFGGREQIAQAK 204

Query: 211 AEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC- 266
            E+ E L   E+ G   LN DD     + +++ A     +  FG+S  AD +    +   
Sbjct: 205 GELVEALPPAEEGGAAILNADDPLVRAMASRTKA----KVILFGESGEADVRAENVRLTD 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + Q    +     + +V     G H   N L    +   L    D    ALS    + G 
Sbjct: 261 TGQPSFSLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIATALS----EAGS 316

Query: 327 GKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGE 383
             R+R  + +     T+++++YNANP S KAA+  L  +   G+GRR  AVLG M E+G+
Sbjct: 317 LSRWRMEVTERPDGVTVVNDAYNANPESTKAALRALVAM---GKGRRTWAVLGKMAELGD 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            + + H  +  +    N+S +   G        + A  +       VH S+    + L +
Sbjct: 374 EALAEHDAVGRLAVRLNVSKLVAVGGREARWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 432

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +S L  GDVV+VK+S S G   +   LLE
Sbjct: 433 RSELRPGDVVLVKASRSVGLESVATALLE 461


>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
 gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P
Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITML 457


>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
 gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
          Length = 469

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 156/493 (31%), Positives = 219/493 (44%), Gaps = 54/493 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++ +A  G  IG   Q  V  +S DSR +AP E F  +KG  +DGHDFI  A  +
Sbjct: 3   MFTLQEIAEATGGRLIGEA-QAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAGR 61

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    ++    +A+ G         V+D L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVTAFLMAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+         G+ NN IG+PLTL R+     + + E+GMS  GEI  L  + 
Sbjct: 122 KEMLARILAQTGPGLKTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGEIDRLAEIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----------- 231
            P + +IT   PAHL     +E +A AK E+F  L++      N DD             
Sbjct: 182 DPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDPLVSSCPTHLNVT 241

Query: 232 ---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              F L  A+  +  IK++   G+S    F LR              L     +V     
Sbjct: 242 RLTFGLRGAEVSSASIKSLGKEGES----FTLR--------------LPDGEEQVTLKAY 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L        L          L  F P +   KR++     G  TLID+SYNA
Sbjct: 284 GRHNIYNALAAAAAAHALGVPGQVIRLGLEEFTPYD---KRFQLEEVAG-VTLIDDSYNA 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNISH 403
           NPASM AA++ L +++  G  R  AVLGDM E+G  ++  H +L     A V  LY    
Sbjct: 340 NPASMAAALATLKEVA--GGARTAAVLGDMLELGLGTEEAHRELGGKAAATVERLY---- 393

Query: 404 VWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             L G      K AL   +    + ++ T + L   + + L  GD V+ K S      ++
Sbjct: 394 -LLGGLATEVEKGALEAGLSPERIVHAATHEELARELAAWLEPGDCVLFKGSRGMKMEKV 452

Query: 461 INLLLEEF-PAIQ 472
              + E   P  Q
Sbjct: 453 ATAVKEALAPKTQ 465


>gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 535

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/450 (31%), Positives = 212/450 (47%), Gaps = 42/450 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           + DSR + P   F A  G   DGH+F+  A  KGA L +V   +    G L  P   VDD
Sbjct: 33  TTDSREVIPGTLFVAKPGEVTDGHNFVSGAFDKGAVLALVERPVKDERGIL-YPSIQVDD 91

Query: 91  VLGALNKLAVAA--RLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V+ A+ K+A  A  ++RS    T+I ITGS GKTTTK++L   LSS  +T A +GSYN  
Sbjct: 92  VVLAMGKIAQYAVEKMRSLGDLTVIGITGSAGKTTTKDLLAAILSSQGETIAPVGSYNGE 151

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLT+ R      + + E+G  H+G I +L ++V P   VI  +  AH   F G++ I
Sbjct: 152 VGVPLTVFRADESTRYLVIEMGADHVGNIEYLANIVHPDHGVILKVGTAHAGEFGGVDNI 211

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-- 264
              K E+ EG+   GT+ LN DD     + A++ A     +  FG  +   ++       
Sbjct: 212 ERTKGELAEGIRTGGTLILNADDERVARMSARASA----PVTYFGVGEKPQYERYTAALG 267

Query: 265 -QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              ++    E  L+       E+    IG H   N+L      +  T   +  +   ++ 
Sbjct: 268 LHTNDAGCPEFTLRLPDASEYEISSKLIGEHHVCNIL------AAATVAYNAGVPGDAIA 321

Query: 321 HPKEGRG--KRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVL 375
           H     G   ++R A        T+I+++YNANP SM AA+  L+Q+    + RR  AVL
Sbjct: 322 HALNNTGALSKWRMARTDRADGVTVINDAYNANPESMTAALRTLAQLGRGAKPRRTWAVL 381

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---------- 425
           G M E+GE S   H  L  ++   NIS +   G       +A P     H          
Sbjct: 382 GAMLELGEASLEEHDRLGRLVVRMNISKLIAVG------NEAKPAYNAAHLEGSWGNEAT 435

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + ET       +++ L  GD+V+ KSSN  
Sbjct: 436 WVETPQEALNILRAELRSGDIVLFKSSNGA 465


>gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
           27126]
          Length = 431

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 186/380 (48%), Gaps = 40/380 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           + A+KGP+++GHDFI  A + GA  V+ + D+     + S+PV  V+D   AL  L  A 
Sbjct: 4   YLALKGPNFNGHDFISTAEKAGASAVIASEDV-----ATSLPVIMVEDTKEALGLLGAAV 58

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +       IAITGS GKTT KEM    L       A  G++NN IGVPLTL R+    ++
Sbjct: 59  KAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFNNDIGVPLTLLRLEPQHEY 118

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + ELG +H+GEI + T+LV+P +A I   A +HL  F  +  +A AK+EIF+GL   G 
Sbjct: 119 AVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGSDGV 178

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSE------QSWM 272
             +N D  F E  + K       T +S  +  +ADF+          C+       Q  M
Sbjct: 179 AVVNVDSQFSEFWQGKLKQTKTLT-FSPQQKNDADFRAEDITIGLDGCAAFHLVCPQGDM 237

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +QL            G H   N L+   +   + A ++     L       GR      
Sbjct: 238 SIQLTIP---------GVHNVGNALVAAALTLQVGASLENVRDGLLAMKQVSGR------ 282

Query: 333 ALNQGFFT----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            LN    T    L+D++YNAN AS+ AAI  LS  S    G R+ VLGDM E+GE ++ +
Sbjct: 283 -LNVKQLTEQVRLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKELGEKARFY 337

Query: 389 HIDLAEVLSLYNISHVWLSG 408
           H  + E      I++++  G
Sbjct: 338 HEQVGEYAKQKGINYLYTMG 357


>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I        
Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G+    FH ++ +++    ISHV+  G     + +      P    V  
Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 419

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
 gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPGMNLAAETV-TF 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I        
Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G+    FH ++ +++    ISHV+  G     + +      P    V  
Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 419

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
 gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
          Length = 454

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 212/449 (47%), Gaps = 33/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  D+RS+   + F A++G  +DGH FI  A+  GA + VV    V  +G  ++  F
Sbjct: 30  INNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGA-IAVVTDRPVEGLGE-TVAQF 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A   +A   R R    II +TGSVGKTTTKE++   LS     +    +YNN 
Sbjct: 88  LVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFGNVHKTRANYNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL  +  D DF I E+ M   G+I  L  + +P I +IT +  AH+        I
Sbjct: 148 IGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGSELAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+        T  LN D+           AL ++T   F + K   + L      
Sbjct: 208 AEAKCELLAHQPPESTAILNRDN-----------ALLMETAQRFWQGKTITYGLEGGDVH 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  + L G S+ +   G+  H A N L  + +   L  D       L+V  PK GR
Sbjct: 257 GTVDGENLILDGVSLPLPLAGV--HNASNYLAAIAVAQCLGLDWQQLQSGLTVELPK-GR 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +RY+   +     L+DE+YNA   SM A++ +L+        RR+AVLG M E+G+   
Sbjct: 314 ARRYQWGQD---VVLLDETYNAGLESMLASLDLLANTPGK---RRLAVLGAMKELGDYGP 367

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALK---DALPRSIH-VHYSETMDG--LFLFIQSS 440
           +FH  +        +  + L G  +LA     DA+    + V      DG  L   ++++
Sbjct: 368 TFHQRVGA-----KVKALGLDGLFLLANDPNTDAIAAGANGVETQSFSDGPSLVAALKTT 422

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           L  GD ++ K+SNS G   +++ LL E P
Sbjct: 423 LQPGDRLLFKASNSVGLGAVVSQLLAENP 451


>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P
Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V   +  + L   +Q+ +   DVV+VK+S       +I +L
Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITML 457


>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
 gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
          Length = 454

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 7   QMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 67  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 125 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 185 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPGMNLAAETV-TF 242

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I        
Sbjct: 243 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 302 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G+    FH ++ +++    ISHV+  G     + +      P    V  
Sbjct: 357 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 415

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 416 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 453


>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
 gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
          Length = 454

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 219/442 (49%), Gaps = 15/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R I     +  I+G  +DGH F+  AV+ GA   +   D+     +L  PV 
Sbjct: 23  IQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDVANPPENL--PVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L++  K     G++NNH
Sbjct: 81  FVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT I  AHL +    E I
Sbjct: 141 IGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G    N D+      +     L  +T+ +FG ++  D+        
Sbjct: 201 AEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TFGDARANDYYPTTVTLQ 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +  ++  + +++      +G H   N L ++ I        +   + L         
Sbjct: 259 ATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMT--- 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R          T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+   
Sbjct: 315 GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAKKIVVLGDMLELGDQEV 372

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSLV 442
            FH ++ +++    ISHV+  G     + +      P    V   +  + L   +Q+ + 
Sbjct: 373 QFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKAYDNKEELVKDLQAVVD 431

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             DVV++K+S       +I +L
Sbjct: 432 VKDVVLIKASRGMKLEEVITML 453


>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
 gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
          Length = 451

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 213/439 (48%), Gaps = 25/439 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N I+ D+R I   + F A+KG  +DGH FI +A+ KGA  V+V+ + V+ I S  I  
Sbjct: 25  LINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAIAKGAIGVIVDHE-VSVISSKRITQ 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L A  ++A   R +    II ITGSVGKTTTKE++   L    K +    +YNN
Sbjct: 84  IIVKDTLIAYQEIANWWRNKLTIPIIGITGSVGKTTTKELIAAVLGVYGKVHKTQANYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP TL  +  + D+ + E+ M   GEI  L+ + RP I +IT +  AH+      E 
Sbjct: 144 EIGVPKTLLSLTTNHDYAVIEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGSREA 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK E+   + K     LN+DD              ++T     + K   + L     
Sbjct: 204 IAEAKCELLAEMPKDSIAILNHDDQRL-----------METAARIWQGKTITYGLEGGDI 252

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E    ++ L+ + ++      G H A N L  L +   L  D +   + ++V  PK G
Sbjct: 253 TGELLDNQI-LRVEGIDFPLPLPGRHNALNYLAALAVTKQLNLDWNLLTQGVTVDLPK-G 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++Y  + N     L+DE+YNA   SMKAA+ +L         R +AVLG M E+GE S
Sbjct: 311 RSQQYSLSNN---IVLLDETYNAGLESMKAALQLLKDTPGK---RHLAVLGTMKELGEAS 364

Query: 386 QSFHID---LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
              H +   +AE L +  + ++ +      A+   + ++I      T + L   +   + 
Sbjct: 365 AQLHQEVGAMAEKLGIDGL-YILVDDPEAQAITQGV-KTIETECFPTHEHLIERLTQVIQ 422

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GD ++ K+SNS G  R++
Sbjct: 423 PGDRILFKASNSVGLNRVV 441


>gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
 gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
          Length = 536

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 196/393 (49%), Gaps = 30/393 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  DSR I     F AI G H DGHD++ +A + GA + +V   +V       I V  
Sbjct: 56  NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIV-EHVVEGTNLNQIVVNN 114

Query: 88  VDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + LG L K  L +   L    TII ITGSVGKTTTK+ML   LS++ +T A +GS+NN
Sbjct: 115 SVEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLDETVAPVGSFNN 174

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IG+PLT  ++  +  F I E+G +H+GEI  LTH+  P +A++  +  AHL  F  +E 
Sbjct: 175 NIGLPLTALQVGSNTRFLIAEMGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVER 234

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNA-------- 256
           IA AK+EI  GL   G   LN DD   + + A S  +  K +  FG+ +KN         
Sbjct: 235 IAQAKSEIVRGLLPHGIAVLNSDD---KRVSAMSCLVENKHVRWFGRNAKNGLLESASKD 291

Query: 257 DFQLRKWK---QCSEQSWMEVQLQGKSMEVVHH-----GI-GYHMAQNMLMTLGIVSILT 307
           D+QL           ++   +  +  S ++V+H      I G H   N L    +   L 
Sbjct: 292 DYQLSASNIKLDSFGKAVFTITERSNSSDLVNHIEVHLAIQGEHNVMNALAAANVARYLG 351

Query: 308 ADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-----S 361
             +D     LS V H    R +    + N   FTLID+S+NANP SMKA I  L      
Sbjct: 352 MTLDDIASVLSKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAYEND 411

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             S   +  RIAVLG M E+G      H ++ E
Sbjct: 412 SCSASSKPFRIAVLGSMLELGSNEDELHTNIGE 444


>gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc fallax KCTC 3537]
          Length = 451

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 223/448 (49%), Gaps = 28/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++ DSR +   + F A+   + DGHD+I +A+  GA  V+V++           P  
Sbjct: 24  ISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENALANGAHAVLVDSQHQLK---EDWPAV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A+ KL    R +    ++AITGS GKTTTK+M     +   +T+    +YNN 
Sbjct: 80  IVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDMAAEIANQQYRTFKTPENYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL  MP   +  I ELGM   G++  L+HLV P IA+IT I  AH+  F     I
Sbjct: 140 IGVPMTLLSMPESTEVLIVELGMDRPGQLTVLSHLVEPDIAIITMIGEAHIEFFKTRRNI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           A AK EI  GL+  GT+ +  D+     E+   + H      + +FG + +AD       
Sbjct: 200 AKAKLEIINGLKAEGTLIIPNDEPLLTQEISHIEQH------VKTFG-TIDADVNATDIS 252

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + QS   +  Q  ++ +    +G +   N L  +   ++L  D+  A KAL  F   +
Sbjct: 253 VENNQSQFNINQQKFAIPM----LGRYNIMNALAAITAGNLLHIDLKNAQKALLDFDLTK 308

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +           T+I + YN+NP ++KA ++ L  +S   +G+R  VLGDM E+G+ 
Sbjct: 309 NRTEILHTTHG---VTIISDVYNSNPTAVKAVLATL--VSREVQGKRYVVLGDMLELGQQ 363

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           +   H  LAE +   +I  V+L G       + +  K      +H +  + +D L   + 
Sbjct: 364 AGIMHAGLAESVQESHIDGVYLVGELMRKHLYPILQKHFDQTQLHQYAKDQLDDLVSDLN 423

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                GDV+++K+S+     R+++ L++
Sbjct: 424 KLGQQGDVMLLKASHGIHLERVVDELMK 451


>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
 gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
          Length = 458

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +    +  
Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V      + L   +Q+ + + DVV+VK+S       +I +L
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457


>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
 gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
          Length = 455

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 217/459 (47%), Gaps = 29/459 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA   +        
Sbjct: 15  SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+   LS     +
Sbjct: 74  --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP + VIT I  AH+
Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   ++IA AK EI + L++ G    N D+   E   AK             K + + 
Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239

Query: 258 FQLRKWKQCSE---QSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           F  R+         +S+M     ++ G + +     IG H   N L  + +      + +
Sbjct: 240 FGFREEDTVFATIFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL+ F P   R +  +  + +    ++D+ YN+NP +++A  +   Q+     GRR
Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVRAVTTSFGQVMVEDGGRR 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426
           IAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       ++H + 
Sbjct: 357 IAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEENLHYYP 416

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
 gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
          Length = 458

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +    +  
Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V      + L   +Q+ + + DVV+VK+S       +I +L
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457


>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 224/467 (47%), Gaps = 23/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           ++PLWT  ++ +A+ G    IV +G    I  D+R++ P + FFAI+G ++D H+FI   
Sbjct: 48  ISPLWTVDEIAEAVNG---TIVQRGPPGPICTDTRTLEPGQWFFAIRGENFDAHEFITPE 104

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +     + V+   +  +     + + G  + L +L K+A  AR +    ++ +TGS GKT
Sbjct: 105 LGHKGCVGVIGNWVCPNWDKGFVEMGG--ETLTSLEKMANYARNKFHGCLVGVTGSAGKT 162

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+ M+ + L S+   +   G+ NN IGV L+L  +P +V F + ELGM   GEI  L  
Sbjct: 163 TTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMELAR 222

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP I VI  +  AHL NF+ +EE+A AK EI    +      LN DD     L     
Sbjct: 223 KARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVPH- 281

Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G+K +  FG+    D +    K        + ++   + +E V    G H+AQN   T
Sbjct: 282 --GVKKVL-FGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACAT 338

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L   +     +LS F P      R    + +    +I++ YNANP S KAAI +
Sbjct: 339 AAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVSTKAAIEL 395

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
           L  I    +G+R+A+LGDM E+G+     H     +LSL   SH   + L G   L   +
Sbjct: 396 LKNID--CKGKRVAILGDMLELGQAETVSH---EMMLSLCCDSHFDLIALVGKRFLRAAE 450

Query: 417 ALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            L      ++ YS   + L   I   L   DV++VK S      +++
Sbjct: 451 NLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVV 497


>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 458

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/428 (34%), Positives = 217/428 (50%), Gaps = 26/428 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR    +  F  + G  +DGHD+I      GA L  + +    S+    I +  V+D  
Sbjct: 33  DSRQKVNKGLFVPLIGEKFDGHDYIDDVKAMGA-LATLTSKKNDSVHQDLITI-AVEDTQ 90

Query: 93  GALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            AL  L VA    SK    IIAITGSVGKTTTKEM+   L +  K +  +G+YNN IGVP
Sbjct: 91  KAL--LDVARYYSSKVDRPIIAITGSVGKTTTKEMVAAVLETTLKVHKTVGNYNNEIGVP 148

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T+  +  D    + E+GM+H GE+  LT +V+P  AVIT I  AH+ +    E I  AK
Sbjct: 149 KTMFALSEDDQVSVIEMGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESREGILKAK 208

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI EGL+  GT+ +N D+    LL  K     I    +FG     D+ +         +
Sbjct: 209 LEILEGLKPEGTVIINGDEP---LLMGKKQDNWI----TFGFDPRLDYCVSNVVTYGVFT 261

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V       ++     G HMA N L+ + I   L    D  IK ++ +  ++ R    
Sbjct: 262 EAVVYTPNSVFKIKIPSPGVHMALNALIAIIIAEKLEIPRDKIIKGIANYKSEKMR---- 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               N G FT+ID++YNAN  SM AA+ VL       + R+IA+LGD+ E+G+ S+S H 
Sbjct: 318 MNITNVGNFTVIDDTYNANYDSMVAAMKVLGNYLT--KNRKIAILGDIFELGKYSESIHR 375

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQ--SSLVD-G 444
           +L E ++   I+ V+  G     + DA+   P + +V  S+      LFI+  S  ++ G
Sbjct: 376 NLGEYIASSRINCVFTIGDAAAYITDAIINSPNNKNV-TSKHFKNKELFIKEWSQYINAG 434

Query: 445 DVVVVKSS 452
           D+V+VK+S
Sbjct: 435 DIVLVKAS 442


>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 456

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 225/467 (48%), Gaps = 22/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++     G  I   P   VNG+  DSR     + F A++G   DGHDF L A+++G
Sbjct: 4   YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQG 63

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  L+V  T  V       + V  V D + AL +LA   R R    ++A+TGS GKT+TK
Sbjct: 64  ATALLVTKTVTVPP----QVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KT    G+YNN +G+PLTL  +       + E+GM   GEI  L  L +
Sbjct: 120 DMIAAVLNTRYKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLLARLAK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  AHL     ++ IA+AKAE+ + +   G   LN D    EL    S   G
Sbjct: 180 PTGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSP--ELRNQVSRCQG 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               YS   +   D   R  +        ++   G + E+     G H   N +  +G+ 
Sbjct: 238 QVWFYSI--NGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       ++ L+     E  G R    +     T+I++ YNANP+S KAA+ VL+++
Sbjct: 296 LRLGIPFTDIVRGLAQV---ELTGMRLEI-IKANNMTVINDVYNANPSSTKAALKVLAEV 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDAL 418
           +P   GR+IAVLG+M E+G L++S H ++ E  +L  ++ +   G         A+K  L
Sbjct: 352 AP---GRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKGGL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           P    VH+ +        ++  +  GD ++VK S S     ++  L+
Sbjct: 409 PGD-RVHHCDNNKLAIEVLRQVMQPGDTILVKGSRSMHMEEIVQALV 454


>gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412]
 gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
 gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412]
 gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
          Length = 452

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + DF + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   I+S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALIARIKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Pseudomonas entomophila L48]
 gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Pseudomonas
           entomophila L48]
          Length = 455

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 179/368 (48%), Gaps = 26/368 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+SIDSRS+   + F A+ GP +DGHD++     KGA   +V  +    I  + +P   V
Sbjct: 27  GVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVERE----IADVDLPQLVV 82

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D   AL +L    R      ++AITGS GKTT KEML   L +    +A  G+ NN +G
Sbjct: 83  ADSRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLAAILRTRGPVHATRGNLNNDLG 142

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            PLTL  +  +    + ELG S +GEIR+   L +P + +I     AH+  F G E+I  
Sbjct: 143 APLTLLEIAPEHSAAVIELGASRMGEIRYTVGLTKPQVVIINNAGTAHVGEFGGPEKIVE 202

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----RKW 263
           AK EI EGL + GT  LN  D  F++ + ++   G   I SF   +  ADF      R  
Sbjct: 203 AKGEILEGLGEGGTAILNLADKAFDIWRKRA---GTHRILSFALDNPQADFHASDIGRDA 259

Query: 264 KQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + C         L G   S+ V  + +G H   N L        +   +      L+   
Sbjct: 260 RGCP-----SFTLHGPDGSVPVQLNLLGIHNVSNALAAAAAAHAVGLSLSGIAAGLNAVQ 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +G   R    +      +ID+SYNANP SM AAI +L+  S    GR + VLGD+ E+
Sbjct: 315 PVKG---RTVAQVAPSGVRVIDDSYNANPTSMCAAIDILAGFS----GRTVLVLGDIGEL 367

Query: 382 GELSQSFH 389
           G+ ++  H
Sbjct: 368 GQWAEEGH 375


>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 212/425 (49%), Gaps = 31/425 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + + G  + +     +N   IDSR +   + F  +KG + DGH +I  A++KGA    
Sbjct: 6   LKKIVNGEFLNLKENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYF 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
               +    G L      V D   AL ++    R + KA +I ITG+ GKT+TKE++   
Sbjct: 66  SEKPLNFKNGIL------VKDTYQALVEVGKHKRNQVKA-VIGITGTSGKTSTKELMNFV 118

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS++  TYA  G+YNN IGVPLTLA +P ++D  I E+G   +G+I +L  +V   I+V+
Sbjct: 119 LSNLASTYATQGNYNNEIGVPLTLANIPENIDLTIIEMGAGKVGDIDYLGKMVNQDISVL 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIY 248
            ++   H+  F   E +   K EIF           N  D  + +L ++       K   
Sbjct: 179 VSVGHGHVGKFGSFENVIKGKGEIF-----------NCGD--YSVLPSELKKFYNPKNPI 225

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G  ++ D ++R  K   + +   ++ +   +E+        + +N+    G++     
Sbjct: 226 TYG--EDGDIEIRDIKIVKDGTVGVIKYKNDKIELKIPVYNIGVFKNIGAVAGVLYHFGY 283

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D    ++ L  F    GRG+     +N G FT+ID+SYNANP S+K AI +L+ +    E
Sbjct: 284 DPIKNLEVLKDFKSSSGRGE----IINIGNFTIIDDSYNANPLSVKNAIDILNSM----E 335

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G +I VLGDM E+G+ SQ  H ++ + L++  I ++ L G     + + +     V + +
Sbjct: 336 GFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGNETKYVFEEIDDKSRVKHFD 395

Query: 429 TMDGL 433
             DG+
Sbjct: 396 NKDGI 400


>gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Kitasatospora setae KM-6054]
          Length = 467

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 224/477 (46%), Gaps = 27/477 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +  QA+ G   G  PQ  + G +  D+R I P   F  ++G   DGHD+   AV  G
Sbjct: 5   TLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAKAVADG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTK 123
           A + V+ T  V       +P   VDDV+ AL +LA A   R+    I+ +TGS GKT+TK
Sbjct: 65  A-VAVLATRPV------GVPAILVDDVVVALGRLARAVVARAADVRIVGLTGSSGKTSTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L+   +T    GS NN IG PLT  R+       + E+G  H G+I +LT +  
Sbjct: 118 DLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPSTRHLVMEMGARHKGDIEYLTGITP 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++  I  AHL  F   E IA AK E+ E L   G   LN DD     + +++ A  
Sbjct: 178 PTVGLVLNIGTAHLGEFGSREGIAEAKGEMVEALSPEGVAVLNADDPLVRAMSSRTRA-- 235

Query: 244 IKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  FG+S +A  +    +   + +    +     S  V     G H   N L    +
Sbjct: 236 --RVVLFGESPDAHVRATDVRLDATGRPQFTLSTPAGSAPVRLRLYGEHHVSNALAAAAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVL 360
              L   VD   +ALS    + G   R+R  +       T+++++YNANP SM+AA+  L
Sbjct: 294 AVELGMPVDRVAEALS----EAGALSRWRMEVVDRADGLTVVNDAYNANPESMRAALRAL 349

Query: 361 SQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           + ++  G  RR   AVLG+M E+GE S   H  +  +    +I+ +   G    A  +  
Sbjct: 350 ATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRLDITKLVAVGGREAARMELG 409

Query: 419 PRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            R+      E++     D     ++S +  GDVV+VK+S S G  R+   LL +  A
Sbjct: 410 ARNEGSWGEESVLVSDADAAIELLRSQVRPGDVVLVKASRSVGLERVAEALLADGAA 466


>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
 gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
          Length = 458

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 229/466 (49%), Gaps = 20/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64

Query: 65  AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A    V T  +  + +   ++PV  V+D L AL  LA   R +    ++ +TGS GKT+T
Sbjct: 65  A----VATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L 
Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L
Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNL 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I
Sbjct: 240 AAETV-TFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   K L         G R          T+I+++YNA+P +M+AA  +++ 
Sbjct: 298 AKHFGVTWEEMKKGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNG 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----L 418
           +   G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      
Sbjct: 355 LD--GFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINF 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           P    V   +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 413 PNE-RVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEIITML 457


>gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 771

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/459 (31%), Positives = 222/459 (48%), Gaps = 23/459 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           ++PLWT  ++ +A+ G    IV +G    I  D+R++ P + FFAI+G ++D H+FI   
Sbjct: 309 ISPLWTVDEIAEAVNG---TIVQRGPPGPICTDTRTLEPGQWFFAIRGENFDAHEFITPE 365

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +     + V+   +  +     + + G  + L +L K+A  AR +    ++ +TGS GKT
Sbjct: 366 LGHKGCVGVIGNWVCPNWDKGFVEMGG--ETLTSLEKMANYARNKFHGCLVGVTGSAGKT 423

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+ M+ + L S+   +   G+ NN IGV L+L  +P +V F + ELGM   GEI  L  
Sbjct: 424 TTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMELAR 483

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP I VI  +  AHL NF+ +EE+A AK EI    +      LN DD     L     
Sbjct: 484 KARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVPH- 542

Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G+K +  FG+    D +    K        + ++   + +E V    G H+AQN   T
Sbjct: 543 --GVKKVL-FGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACAT 599

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L   +     +LS F P   R +     + +    +I++ YNANP S KAAI +
Sbjct: 600 AAVAVALGVSLPQVGISLSRFIPVSMRSE---LEVAKTGIKIINDVYNANPVSTKAAIEL 656

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
           L  I    +G+R+A+LGDM E+G+     H     +LSL   SH   + L G   L   +
Sbjct: 657 LKNID--CKGKRVAILGDMLELGQAETVSH---EMMLSLCCDSHFDLIALVGKRFLRAAE 711

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            L      ++ YS   + L   I   L   DV++VK S 
Sbjct: 712 NLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSR 750


>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
 gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
          Length = 458

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 225/459 (49%), Gaps = 18/459 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +    +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYS 249
            I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + + T   +
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNLATETVT 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG ++  D+        +  +  ++  + +++      +G H   N L ++ I       
Sbjct: 246 FGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVT 304

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  
Sbjct: 305 WEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFA 359

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVH 425
           ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +      P    V 
Sbjct: 360 KKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVK 418

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 419 AYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 462

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 216/432 (50%), Gaps = 17/432 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  DSR I   + F  +   H DGHD+I +A+  GA   +  +D    +  L+IP  
Sbjct: 28  LTGVCFDSRKIQAGQLFVPLVAEH-DGHDYIDNAIAGGASATLWASDHADRL-PLTIPAL 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD+L A  +L+     +    +IA+TGS GKTTTK+M+   LSS         ++NN 
Sbjct: 86  VVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTTTKDMIAAILSSTFNVTKTQDNFNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+ +M  + +F + E+GM   G++ FL+ L RP +AVIT I  AH+  F   ++I
Sbjct: 146 IGLPYTILQMESNTEFLVAEMGMDRPGQLDFLSKLARPDVAVITMIGEAHIEFFGTRDKI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQ 265
           A AK EI  GL+  G    + D+    LL  ++  +    I  +FG+  + D      K 
Sbjct: 206 ADAKMEITHGLKADGFFVYDGDEP---LLTERAQQVDESVIKATFGRKDSNDVFAIDSKD 262

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              Q+   V L  + ++     IG +   N L  + +  I           L+ F   + 
Sbjct: 263 GQYQTQFHVNLWPE-IDFTIPMIGDYNVNNALAAISVGRIFRIHPQMMADKLAKFDLTKN 321

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +    +  +    ++ + YN+NP + K  ++     +   +GRRIAVLGDM E+G  S
Sbjct: 322 RTQWLSGSKGE---RILSDVYNSNPTAAKEVLTAFKNTTT--KGRRIAVLGDMLELGTQS 376

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440
           ++ H  LA+ L   +I  V+L G  + AL + L     P ++H + ++ +D L   +Q+ 
Sbjct: 377 KAMHASLADALDPASIPVVYLIGADMDALYEKLKPVYAPENLHYYQADQLDELTSDLQAE 436

Query: 441 LVDGDVVVVKSS 452
           L   D V++K+S
Sbjct: 437 LSADDEVLLKAS 448


>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
 gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
          Length = 458

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +    +  
Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V      + L   +Q+ + + DVV+VK+S       +I +L
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457


>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
           uraniireducens Rf4]
 gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter uraniireducens Rf4]
          Length = 468

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 190/388 (48%), Gaps = 14/388 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++++A  G  IG      V+G+S DSR +A  E F A+KG  +DGHD++  AV +
Sbjct: 1   MFTIDEIIEATGGTRIG-SGNDAVSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVAR 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V  D +A     +  ++  V D L AL  LA   R R    ++ ITGS GKTTT
Sbjct: 60  GVRAFLVAADRLAGKQPPNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+         G+ NN IG+PL L R+     + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSEPGEIDRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT    AHL +   +E +A AK E+F  L+  G    N DD       A +   
Sbjct: 180 NPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDPLISRCPAPA--- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G+K + SFG  + A+      +    +     ++L G  + V     G H   N L    
Sbjct: 237 GVKRL-SFGL-RGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  D +     L  F P +   KR+     +G   L+D+SYNANPASM AA+  L 
Sbjct: 295 AAHLLGVDPELIRSGLEEFTPYD---KRFSLEEIRGVV-LVDDSYNANPASMAAALVTLR 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH 389
            I    E R IA+LGDM E+G  S + H
Sbjct: 351 DIRE--ESRAIAILGDMLELGTGSVAAH 376


>gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 453

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 221/463 (47%), Gaps = 31/463 (6%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +QG  +G      ++ +S D+R I P+  F A+ G  +D H F   A+  GA  ++V   
Sbjct: 13  VQGQLLG--ADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERA 70

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +   +  +      V +   AL KL      + +   IAITGS GKTT KEM+   LS+ 
Sbjct: 71  LDVDVAQIV-----VSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAK 125

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +     G++NN IGVPLTL R     DF + ELG +H+GEI + T LV+P +A++  +A
Sbjct: 126 GQVLYTAGNFNNDIGVPLTLLRSSQKDDFAVIELGANHIGEIAYTTQLVKPDVALVNNVA 185

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-K 252
            AHL  F  ++ +  AK EI++GL    T  +N D    EL    S  L  K + +F   
Sbjct: 186 AAHLEGFGSMDGVKQAKGEIYQGLAPGKTALVNLDSHGGELW---SQVLVDKHVKTFSVN 242

Query: 253 SKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTAD 309
            +NADF   +    Q  E S++    QG+  + V  GI G H   N L    +   + A 
Sbjct: 243 QQNADFFASQIALNQAGEASFILHTPQGE--QPVTLGILGQHNVSNALAASALAMEMGAS 300

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++     L+     +GR    +         LID+SYNA+  +MKAAI +L+  S    G
Sbjct: 301 IEEVAVGLAQLSAVKGRVDVSQLT---PMIRLIDDSYNASVPAMKAAIELLASFS----G 353

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            R  +LG+M E+G  S + H  + E  + +   +V   G     +          H+S  
Sbjct: 354 CRWLILGNMAELGTESLALHQQVGEHAAPFQFDYVLTYGEDARVISQQCQGQ---HFSTH 410

Query: 430 MDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            D +  FI+  L        V++VK +NS G  +++  L E+F
Sbjct: 411 QD-MLTFIEQQLEVRASQSHVLLVKGANSSGMSKIVAALKEKF 452


>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 462

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 229/473 (48%), Gaps = 37/473 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V +++  S G +  S  V  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIV-SEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P
Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241
            IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K   
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNM 296
                +Y  G  K  DF        +E    ++  QGK+    + G      G H   N 
Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT---AYKGFSVNVPGKHNVLNS 293

Query: 297 LMTLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           L  +    ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SM
Sbjct: 294 LTAIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KAAI V+  I      R IA+LG M E+G      H +++E      I  ++  G    A
Sbjct: 347 KAAIDVMKNIKGK---RAIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEA 403

Query: 414 LKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++        +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 404 YREGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 454

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 216/445 (48%), Gaps = 23/445 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR I   + F   KG + DGH +   A+  GAG      D   +    + PV 
Sbjct: 26  IKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGATFFQRDSTLT-APTNGPVV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L AL +LA A       T+IA+TGS GKTTTK+ML   LS   +     G+YNN 
Sbjct: 85  FVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDMLENVLSGKFRVQKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI  L+++ +P  AVIT I  +H+ +    E I
Sbjct: 145 IGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+    LLK     L      S G S   D       QC
Sbjct: 205 AKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSAHQVSVGLSAKNDM------QC 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S +E  +     + V + I   G H  +N  + + +  I+    +   + L+     
Sbjct: 256 QMVSHLEEGITFTVNDDVTYTISILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLT 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R +++  A N     +I+++YNA+P SMKAAI  LS    H +G  I VLGD+ E+GE
Sbjct: 316 DMRMQKF-MAPNGAM--VINDAYNASPTSMKAAIDTLS----HMKGETILVLGDVLELGE 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441
            S+  H  +   L    I  ++  G   +A+ +     ++  +H+ +  D L  ++ S +
Sbjct: 369 QSRQLHESVGSYLENKGIHQLYTFGEGAMAIHEKGKAYVNEAIHFDQK-DKLMRYLTSIV 427

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466
               VV+VK+S       ++  L+E
Sbjct: 428 EQHSVVLVKASRGMHLEEVVEALVE 452


>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 468

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 21  QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 80

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 81  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 139 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 198

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 199 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I +      
Sbjct: 257 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 315

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 316 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 370

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G     FH ++ +++    I+HV+  G     + +      P    V  
Sbjct: 371 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE-RVKA 429

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 430 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 467


>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
 gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
          Length = 455

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 216/454 (47%), Gaps = 19/454 (4%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA   +        
Sbjct: 15  SVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+   L+     +
Sbjct: 74  --PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVH 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP + VIT I  AH+
Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNA 256
             F   ++IA AK EI + L++ G    N D+   E   AK     IK   S FG  +  
Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAK-----IKQDKSTFGFREED 246

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 ++     +  EV    +  ++    IG H   N L  + +      + +   +A
Sbjct: 247 TVFATTFRSYMHHATFEVNDSEQQFKIPM--IGKHNVSNALAAISVGRHFGENYEQIAQA 304

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F P   R +  +  + +    ++D+ YN+NP ++KA  +   Q+     GRRIAVLG
Sbjct: 305 LANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVKAVTTSFGQVMVKDGGRRIAVLG 361

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMD 431
           DM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       ++H +  + M+
Sbjct: 362 DMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAANLHYYPQDEMN 421

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   +++ +   D+V++K S+     ++++ L+
Sbjct: 422 HMIDDLKNDIKPDDIVMLKGSHGMHLEKVLDRLM 455


>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 215/467 (46%), Gaps = 49/467 (10%)

Query: 20  GIVPQGFVNG-----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+ P+GF +      ++ DSR + P   F A  G  +DGHDF   A+++GA  VV+N   
Sbjct: 12  GLAPEGFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNH-- 69

Query: 75  VASIGSLSIPVFGVD--------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                    PV GV         D   A+  +    R +    ++ +TGSVGKTTTK+M 
Sbjct: 70  ---------PVEGVPAERAVISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMT 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             A++    T    G+ NN +G+P T+ R+  D ++ + E+GMSH GEI  L    RP +
Sbjct: 121 YAAIAGFGNTIKTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I  +H+ N    E I  AK EI  GL +   + LN DD F       +H   ++ 
Sbjct: 181 GIITCIGVSHIGNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAALPTH---VRP 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIV 303
           ++     +NAD      +Q  E   M   L  K+    EV    +G H   N L      
Sbjct: 238 VWFSLGDENADVCALDVRQ--EGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALAAYAAA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L    +  I  L+ F   E  G R +  ++ G   +I++ YNANP SMKAA+++  + 
Sbjct: 296 TRLGLAPEGVIAGLADF---EQTGMRQKI-VHAGSMDVIEDCYNANPDSMKAALAMFKEY 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDA-L 418
                 RR A+LGDM E+G +S   H +L    +   ++ +   G        A KDA L
Sbjct: 352 PCK---RRFALLGDMLELGGMSAPAHEELGRQAAEAGLTALVTYGPEAARTARAAKDAGL 408

Query: 419 PRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +H   Y +  D L     + +  GD ++VK+S      + + L 
Sbjct: 409 ADVVHAEDYRQAADALL----ARMAPGDALLVKASRGMALEKALALF 451


>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
 gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
          Length = 454

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 7   QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 67  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 125 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 185 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 242

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I +      
Sbjct: 243 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 302 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G     FH ++ +++    I+HV+  G     + +      P    V  
Sbjct: 357 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE-RVKA 415

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 416 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 453


>gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
 gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
          Length = 452

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL K G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPKNGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
 gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I +      
Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 306 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G     FH ++ +++    I+HV+  G     + +      P    V  
Sbjct: 361 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE-RVKA 419

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 420 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 457


>gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
 gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
          Length = 457

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 193/385 (50%), Gaps = 23/385 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+ IDSR +     +  I+G + +GH F+  A+  GA  V+   +         + V  V
Sbjct: 28  GVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVL--WERREPNPPKEVTVILV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   AL  LA A R +    +I ITGS GKT+TK+++   ++    T   +G++NN IG
Sbjct: 86  EDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYITQKTMGNFNNEIG 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL     +V+ G+ E+GM +LGE+ FLT+LVRP IA+IT +  AHL N   +E IA 
Sbjct: 146 VPLTLLSFSQNVEVGVVEMGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIAR 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           AK EI EGL   G +  N D     + L+A   + GI  + SFG  +  D+ + +   C 
Sbjct: 206 AKVEIAEGLRDGGMLIYNGDQPLLKDALRAAQLSGGI-ALRSFGTQQGNDYIVHEV--CQ 262

Query: 268 EQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           ++  +   +     +V  H   IG H A N          L        +AL  F   E 
Sbjct: 263 QKEGLSFYIN----DVACHLDMIGKHQAMNATAAWIAAKALQV---CEAEALKGFESIEK 315

Query: 326 RGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            G R    + +Q    ++++SY +NP S  AA+  L +   P+    ++AVLGDM E+GE
Sbjct: 316 TGLRNELVSFDQAL--ILNDSYKSNPQSALAALDTLEEFDIPY----KLAVLGDMLELGE 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            S   H  L + L  Y++  V   G
Sbjct: 370 TSDQIHYQLGKDLKNYHLQEVLTIG 394


>gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
          Length = 448

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 196/393 (49%), Gaps = 25/393 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G SIDSR++   E F AI+G ++DG ++I  A++KG+  ++      +S    S     V
Sbjct: 30  GFSIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGSSWIIT-----SSKNHKSNRCIYV 84

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNN 145
            +    L K+A          IIAITGS GKTTTKEM+   L       +     G+ NN
Sbjct: 85  KNTKETLCKIASYLVGEVSPKIIAITGSNGKTTTKEMVANILYQHYPKNEILVTKGNLNN 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLTL  +  +    + E+GM+H  EI  L  +  P IAVIT I  AHL NFS    
Sbjct: 145 DIGLPLTLFNLKKNHTIVVLEMGMNHQDEITKLCKIAPPDIAVITNIGEAHLENFSSKNG 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI  G +K G   L  DD +F  L  KS  L ++ I SFG +KN++ +L     
Sbjct: 205 IAKAKKEILLGAKKNGIAILPRDDVYFNYL--KSDCLYLRCI-SFGINKNSNIRL----- 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + S   + +  + + +    +G     NM   + + + L    +T IK +      EG
Sbjct: 257 --DLSSKVLTVDEEKINIESSLLGKENLMNMAAAVSVANALELPTETIIKGMKTIDSIEG 314

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +    A N     +ID++YN+NP+SM  AI VL Q     + ++I ++GDM E+G LS
Sbjct: 315 RLEVKITASN---IKIIDDTYNSNPSSMMMAIDVLDQF----KQKKILIVGDMAELGPLS 367

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           + +H D+   +   NI  V   G     L D L
Sbjct: 368 KKYHTDIGHYILEKNIDLVMGIGNMTKYLIDVL 400


>gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 453

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 205/412 (49%), Gaps = 30/412 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  HD++  ++    GI P   +  ++ DSR+I     F A+ G  +D H F  +AV  G
Sbjct: 4   FMLHDIITILRAKVYGINP--MIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVLAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++VN  +      L+IP   V+D L AL +L+   R +  A +IA+TGS GKT+ KE
Sbjct: 62  ASAILVNRQL-----PLNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L    K  A  G+ NN IGV LTL R+    DF I ELG +H+GEI    +LV P
Sbjct: 117 MTASILRQCGKVLATQGNLNNDIGVSLTLLRLTPQDDFAIIELGANHIGEISSNANLVLP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA++  I+ +HL+ F  +  +A AK EIF  L   G + LN + + +   +  S     
Sbjct: 177 EIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVILNENSNDWLNWQQGSKC--- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLG 301
           KT++ F  +K  + Q    K  S    M   L   QG S +V    +G H   N L    
Sbjct: 234 KTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQG-SCQVQLPMLGKHNITNALAASA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   + A++      LS   P  GR    +  + +    LID+SYNAN  SM AA  VLS
Sbjct: 293 LAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVGK---LLIDDSYNANVNSMIAAAQVLS 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHV 404
           ++     G  + V+GDM E+GE    +H         + + +VLS+ N+S++
Sbjct: 350 EM----PGYLVMVVGDMAELGEKEIKYHQQVGKFIAMVGINKVLSIGNLSYI 397


>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
           ATCC 33323]
 gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
 gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
          Length = 455

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 216/454 (47%), Gaps = 19/454 (4%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA   +        
Sbjct: 15  SVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+   L+     +
Sbjct: 74  --PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVH 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP + VIT I  AH+
Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNA 256
             F   ++IA AK EI + L++ G    N D+   E   AK     IK   S FG  +  
Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAK-----IKQDKSTFGFREED 246

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 ++     +  E+    +  ++    IG H   N L  + +      + +   +A
Sbjct: 247 TVFATTFRSYMHHATFEINDSEQQFKIPM--IGKHNVSNALAAISVGRHFGENDEQIAQA 304

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F P   R +  +  + +    ++D+ YN+NP ++KA  +   Q+     GRRIAVLG
Sbjct: 305 LANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVKAVTTSFGQVMVQDGGRRIAVLG 361

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMD 431
           DM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       ++H +  + M+
Sbjct: 362 DMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAANLHYYPQDEMN 421

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   +++ +   D+V++K S+     ++++ L+
Sbjct: 422 HMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
 gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
          Length = 464

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 202/391 (51%), Gaps = 34/391 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ DSR+      FFA++G  +D H F+    Q+GA ++VV      +  ++S+P  
Sbjct: 27  VDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAKILVVEH----ADPAVSVPQL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V +   AL +LA+  R +    + A+TGS GKTT KEM    L    K    +    G+
Sbjct: 83  VVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVKEMTAAILQQTAKNADEVLFTAGN 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H GEI + T L RP +A++  +APAHL+ F  
Sbjct: 143 FNNDIGVPLTLLRLTDQHRFAVIELGANHAGEIAYTTQLARPDVALVNNVAPAHLAGFGS 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++ +A AK EI++GL + G   +N D ++  + +       IK  +S   S+ AD   R 
Sbjct: 203 LQGVAKAKGEIYQGLTENGIAVINQDCNYLPMWQQNIAQHPIKR-FSLTHSE-ADIYARA 260

Query: 263 WKQ---------CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            +          C+ Q  +E++L           +G H   N L    +   L A +D  
Sbjct: 261 IQHTNIGFSFVLCTPQGEIEIEL---------PYLGLHNVSNALAAASLAIALGATLDDV 311

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L++   K  +G+ +   +N    TL+D++YNAN  S+KAAISVL   +P  +  ++ 
Sbjct: 312 KKGLAL--GKRVKGRLFPIEVNSQ-LTLLDDTYNANVDSLKAAISVLYS-AP--QQVKVL 365

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           V+GDM E+GE ++  H  +AE     N+  V
Sbjct: 366 VVGDMAELGESTEQCHRQVAEAALNANLDQV 396


>gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 462

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 223/453 (49%), Gaps = 29/453 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G++ DSR +   + F  + G + DGH +I  A++ GA   +  +D    +    
Sbjct: 22  PDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGAVATLWASDHADDVPE-D 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYAC 139
           +PV  V D L AL +L      +    ++A+TGS GKTTTK+M+   L +   + KT+A 
Sbjct: 80  LPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVLGTQFNVTKTHA- 138

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+P +AVIT I  AH+  
Sbjct: 139 --NFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEF 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   + IA AK EI  GL++ GT   N D+   +  +AK  +   +T   FG        
Sbjct: 197 FGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQ-ERAKEVSQHQRT---FGLDDTNTLA 252

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                    Q+  +  L   +   +   +G +   N L  L +          A +A++ 
Sbjct: 253 GSDITTSRAQTQFKTSLWPDNTYTIPM-MGAYNVNNALAALLVADTFHIRPAAAQQAIAS 311

Query: 320 FHPKEGRGK---RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           F P E R +    YR         ++ + YN+NP + +  ++  + +    +G+RIAVLG
Sbjct: 312 FVPTENRTEWLTGYRGE------AILSDVYNSNPTAARRVLAAFAAVP--TKGQRIAVLG 363

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431
           DM E+G+ S + H+ LA  L    I+ V+L+G H+ AL + L       ++H + ++   
Sbjct: 364 DMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQP 423

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            L   + +++   D V++K S+     +++  L
Sbjct: 424 QLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 456


>gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
 gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
          Length = 452

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ HI + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
 gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
          Length = 452

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/448 (31%), Positives = 217/448 (48%), Gaps = 26/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +S D+R+I P   F A+ G  +D HDF L+AV+ GA  ++V+  +         P  
Sbjct: 24  INAVSTDTRTIEPGALFVALVGERFDAHDFALNAVEAGATALLVSRAL-----DTQTPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L        +   +AITGS GKTT KEM+   + +  +     G++NN 
Sbjct: 79  LVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + DF + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQLVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRK--W 263
             AK EI++GL       +N D +  E  +     L  K + +F      AD+   K   
Sbjct: 199 KQAKGEIYQGLAPGSAAIVNLDSNGGEHWQ---EVLADKQVKTFSVLDSTADYFAHKITM 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E S+  +   G   EV    IG H   N L    +   L A ++     L   H  
Sbjct: 256 NNSGEASFELLSPMG-GFEVKLGIIGQHNVANALAATALAFELGASIEMVQSGLR--HLA 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+    AL +   TLID+SYNA+  +MKAA  +LS      +G R  +LG+M E+G+
Sbjct: 313 KVKGRVESIALTEK-ITLIDDSYNASVPAMKAAADLLSSF----KGVRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +   HV   G    A   A+ +     + +T D +  FI+  L  
Sbjct: 368 ESLALHRQVGEHAAPFKFEHVLTYG----ADARAISQQCQGTHFDTHDAMIEFIKQQLPL 423

Query: 444 GD---VVVVKSSNSCGFYRLINLLLEEF 468
            D    ++VK +NS G  ++   L E +
Sbjct: 424 HDCAQTLLVKGANSAGMSKIAAALKEMY 451


>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
 gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
          Length = 489

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 145/409 (35%), Positives = 196/409 (47%), Gaps = 26/409 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+ G  +   VP      IS   DSR I P   F AI G   DGHDF+
Sbjct: 1   MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAAR--LRSKATIIA 112
                +GA   +V+ +    I    +P   V++    LGAL K  +  R  L S  T+I 
Sbjct: 60  PKVGAQGAVAALVDHE----IAGAQVPQIVVENTVKALGALAKHNIERRRALESPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK++L   LS +  T A +GS+NN IG+PLT  ++     F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVVEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSE---QSWMEVQLQGKSMEVVHH 286
             + A + A     +  FG  +  D QL       +C +    S++     G+   V   
Sbjct: 236 AAMSAIAPA----DVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLG 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDES 345
             G H   N L    +   L   +D     LS V      R         +  FTLID+S
Sbjct: 292 ICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDS 351

Query: 346 YNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDL 392
           +NANP SMKA +  LS+     E +  RIAVLG M E+G      H D+
Sbjct: 352 FNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDV 400


>gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 454

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 216/445 (48%), Gaps = 23/445 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR I   + F   KG + DGH +   A+  GAG      D   +    + PV 
Sbjct: 26  IKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGATFFQRDSTLT-APTNGPVV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L AL +LA A       T+IA+TGS GKTTTK+ML   LS   +     G+YNN 
Sbjct: 85  FVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDMLENVLSGKFRVQKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  I E+GMS   EI  L+++ +P  AVIT I  +H+ +    E I
Sbjct: 145 IGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+    LLK     L      S G S   D       QC
Sbjct: 205 AKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSAHQVSVGLSAKNDM------QC 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S +E  +     + V + I   G H  +N  + + +  I+    +   + L+     
Sbjct: 256 QMVSHLEEGITFTVNDDVTYTIPILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLT 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R +++  A N     +I+++YNA+P SMKAAI  LS    H +G  I VLGD+ E+GE
Sbjct: 316 DMRMQKF-MAPNGAM--VINDAYNASPTSMKAAIDTLS----HMKGETILVLGDVLELGE 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441
            S+  H  +   L    I  ++  G   +A+ +     ++  +H+ +  D L  ++ S +
Sbjct: 369 QSRQLHESVGAYLENKGIHQLYTFGEGAMAIHEKGKAYVNEAIHFDQK-DKLMRYLTSIV 427

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466
               VV+VK+S       ++  L+E
Sbjct: 428 EQHSVVLVKASRGMHLEEVVEALVE 452


>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
          Length = 455

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 218/445 (48%), Gaps = 19/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR +     F  +KG   DGHDFI  A+  GA   +         G+   P+ 
Sbjct: 24  ISSVAFDSRKLNENSLFVPLKG-ERDGHDFINSAIANGAVATLWEKGHPNKPGNF--PLI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A+ +LA     +    ++ ITGS GKTTTK+M+   LS     +    ++NN 
Sbjct: 81  EVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M    +  + E+GM   G++  L+ LV+P + VIT I  AH+  F   ++I
Sbjct: 141 IGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L++ G    N D+    LL+ ++  +  +   +FG S        ++K  
Sbjct: 201 ADAKMEITDFLKEDGEFIYNGDEP---LLRQRAEKI-TQVKSTFGFSDQDTIHALEFKSY 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +        +   +    IG H   N +  + +        D    +LS F P   R
Sbjct: 257 MHHASFVTNSSEQKFSIPM--IGKHNVSNAMAAICVGHHFGESDDEIAASLSDFTPTANR 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELS 385
            +  +  + +    ++D+ YN+NP + KA ++   Q+  P G GRRIAVLGDM E+G  S
Sbjct: 315 MQWRKGDVGE---DIMDDIYNSNPTAAKAVLTSFGQVEVPEG-GRRIAVLGDMLELGAAS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440
              H  LA+ L    I+ V+L G  +  L++A+     P ++H +  + M+ +   +++ 
Sbjct: 371 AELHASLADKLDPLVINEVYLYGPEMKNLEEAIKGKYVPDTLHYYPQDKMERMIDDLKND 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   D+V++K+S+     +++  LL
Sbjct: 431 IHSNDIVMLKASHGMHLDKVLERLL 455


>gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia fergusonii B253]
          Length = 452

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
 gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
          Length = 458

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT +  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +    +  
Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V      + L   +Q+ + + DVV+VK+S       +I +L
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457


>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 458

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 219/443 (49%), Gaps = 17/443 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+R I     +  I+G  +DGH F+  AV+ GA   +   D+     +L  PV 
Sbjct: 27  IQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDVANPPENL--PVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL  LA   R +    +I +TGS GKT+TK+++T  L++  K     G++NNH
Sbjct: 85  FVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT I  AHL +    E I
Sbjct: 145 IGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQ 265
           A AK EI  GL++ G    N D+    LL  +   +  I    +FG ++  D+       
Sbjct: 205 AEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNLIAETVTFGDARANDYYPTTVTL 261

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +  +  ++  + +++      +G H   N L ++ I        +   + L        
Sbjct: 262 QATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMT-- 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R          T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+  
Sbjct: 319 -GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQE 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSL 441
             FH ++ +++    IS+V+  G     + +      P    V   +  + L   +Q+ +
Sbjct: 376 VQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPNE-RVKAYDNKEELVKELQAVV 434

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
              DVV+VK+S       +I +L
Sbjct: 435 DAKDVVLVKASRGMKLEEVITML 457


>gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LF82]
 gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 452

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli M863]
 gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli STEC_7v]
          Length = 452

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
 gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
          Length = 457

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 187/392 (47%), Gaps = 31/392 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SIDSR I     F   KG + DGH F+  A++KGA       D+      L +P+ 
Sbjct: 27  IQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDAIEKGAAAAFWQKDVPNP--PLHLPIL 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA + R   K  +  ITGS GKTTTK+M    LS   K     G+YNNH
Sbjct: 85  IVEDTLTALQELARSYRDELKIKVAGITGSNGKTTTKDMTANLLSLQYKVQKTEGNYNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  D +  + E+GMS  GEI FLT L RP   +IT I  +HL +    E I
Sbjct: 145 IGLPLTILALEEDTEIAVLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           A AK EI  GL++ G +    D+    E LK+ + +  ++T   FG++   D      KQ
Sbjct: 205 AEAKLEIVNGLQENGLVIYYGDEPLLDEKLKSYNGSAALRT---FGRTGKNDVYPMDIKQ 261

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324
               S                GI     +  L  LG  ++L A       A   V + K 
Sbjct: 262 NDSGSTF--------------GINVSSGKFYLPVLGTHNVLNALAAMIAAAHFGVPYEKM 307

Query: 325 GRG--------KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             G         R      Q    +I+++YNA+P SM AAI +++ +   G  ++I VLG
Sbjct: 308 NEGFASLKLTNMRMELLEGQSGEKIINDAYNASPTSMNAAIELIANLP--GYKKKILVLG 365

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           DM E+G   + FH    + +    + +V+  G
Sbjct: 366 DMLELGPQEEDFHYSTGKSVDPEKVDYVFTFG 397


>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
 gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
          Length = 536

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 195/396 (49%), Gaps = 36/396 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82
           N +  DSR I     F AI G H DGHD++ +A + GA + +V      T++   + + S
Sbjct: 56  NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVEGTNLNQIVVNNS 115

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           I   G    L A + L +   L    TII ITGSVGKTTTK+ML   LS++ +T A +GS
Sbjct: 116 IEALG----LLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVAPVGS 171

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN+IG+PLT  ++  +  F I E+G +H+GEI  LTH+  P +A++  +  AHL  F  
Sbjct: 172 FNNNIGLPLTALQVGSNTRFLIAEMGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGS 231

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNA----- 256
           +E IA AK+EI  GL   G   LN DD   + + A S  +  K +  FG++ KN      
Sbjct: 232 VERIAQAKSEIVRGLLPHGIAVLNSDD---KRVSAMSCLVENKHVRWFGRNVKNGLLESA 288

Query: 257 ---DFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVS 304
              D+QL     K     +  +   +    S  + H  +     G H   N L    +  
Sbjct: 289 SKDDYQLSASNIKLDSFGKAVFTTTERSNSSNLMNHIEVHLAIQGEHNVMNALAAANVAR 348

Query: 305 ILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--- 360
            L   +D     LS V H    R +    + N   FTLID+S+NANP SMKA I  L   
Sbjct: 349 YLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAY 408

Query: 361 --SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                S   +  RIAVLG M E+G      H ++ E
Sbjct: 409 ENDSCSASSKPFRIAVLGSMLELGSNEDELHTNIGE 444


>gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Leadbetterella
           byssophila DSM 17132]
 gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leadbetterella
           byssophila DSM 17132]
          Length = 433

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 208/430 (48%), Gaps = 23/430 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI+ D+R+I     FFA+KG  ++G+ F   A+Q GA   VV+    AS+      ++  
Sbjct: 15  GITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDD---ASLKGKERMIY-C 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +DVL  L  LA   R +    +IA+TGS GKTT KE+LT  L    K +A  G+ NNHIG
Sbjct: 71  EDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVLGQKYKVHATKGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  MP D    I E+G +H  EI  L  +  P    IT +  AHL  F G E I  
Sbjct: 131 VPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIAEPTHGFITNLGKAHLEGFGGEEGIRK 190

Query: 209 AKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+F+ L+++G I F+N +D     ++A +    I  I  +G  ++A       K+ S
Sbjct: 191 GKGELFDFLKQSGGIVFVNANDP---KVRALAEERNILPIVYYGDDEDALL----IKEES 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E  + GK+        G +   NM     I        D A +A++ ++P   R 
Sbjct: 244 PVVVFESPVSGKTYTTFIG--GKYNFDNMQTAHAIGRYFDVSEDKACEAIAHYNPDNNRS 301

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N      I ++YNANP+SM+A++     +    +  ++ VLGDM E+G+ S++
Sbjct: 302 QHVMVGTNH----FIMDAYNANPSSMEASLKSFGALKT--DSPKVVVLGDMYELGDYSEA 355

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + ++LS      V L G ++ A    LP++ +     +M    L       +   +
Sbjct: 356 EHAAIGKLLSELKFDDVVLFGENMKAALAFLPKAYYFTDKFSMHNWLL---DRKYENTYI 412

Query: 448 VVKSSNSCGF 457
           +VK S S G 
Sbjct: 413 LVKGSRSTGL 422


>gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli CFT073]
 gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli CFT073]
 gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ABU 83972]
 gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 153-1]
          Length = 452

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGCHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
 gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
          Length = 452

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRQAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
 gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
          Length = 462

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 228/470 (48%), Gaps = 31/470 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V +++  S G +S    V  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIV-SEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P
Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241
            IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K   
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMT 299
                +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  
Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTA 296

Query: 300 LG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKAA
Sbjct: 297 IACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I V+  I      R IA+LG M E+G      H +++E      I  ++  G    A ++
Sbjct: 350 IDVMKNIKGK---RTIALLGSMMELGAEGYRAHREVSEYAREKGIDLLFSIGEFSEAYRE 406

Query: 417 ALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 407 GFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
 gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
          Length = 453

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 147/452 (32%), Positives = 215/452 (47%), Gaps = 41/452 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR+  P + F A+KG H+D HDF+   + +GA   +V  D         + + 
Sbjct: 22  VTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVRQDFALP----GVALV 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD   AL +LA   R R +  ++ ITGS GKTT KEMLT  L++        A  G++
Sbjct: 78  QVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLTAILAAHAGRDTVLATAGNF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202
           NN IG+PLTL  +     + + E+GM+H GEIR+LT L RP +A++     AHL   FSG
Sbjct: 138 NNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTGLARPRVALVNNALRAHLGGGFSG 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
             +IA AK+EIFEGL + G   +N DD    + +A +     + + SFG  + AD   R 
Sbjct: 198 TADIARAKSEIFEGLAEDGVAVINADDPHAAIFRAAAA---GRRLLSFGLGE-ADVNARD 253

Query: 263 ---------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                    +  CS Q  + V L            G H  +N L        L   +   
Sbjct: 254 VTLSDTAAHFVLCSPQGDVAVALPAP---------GEHNVRNALAAAAAALALEVPLAAI 304

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRI 372
              L+ F    GR +R          TLID++YNANP SMKA I VL Q ++P     R 
Sbjct: 305 AAGLAGFAGVRGRLQRKHAGNGA---TLIDDTYNANPDSMKAGIDVLLQALAP-----RW 356

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            V+GD+ E+GE + + H ++        +  +   G   L+   A       ++ +T+D 
Sbjct: 357 FVMGDIGELGENAAALHAEVGAYARERGLDALLTLGD--LSRHAAAAFGATANHFDTLDA 414

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L  ++ S L     V+VK S      R++  L
Sbjct: 415 LLSYLDSHLPADATVLVKGSRFMRMERVVEHL 446


>gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 EDL933]
 gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. EC1212]
 gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1125]
 gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1044]
          Length = 452

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIVWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H++E    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFAEKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 489

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 145/409 (35%), Positives = 196/409 (47%), Gaps = 26/409 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+ G  +   VP      IS   DSR I P   F AI G   DGHDF+
Sbjct: 1   MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAAR--LRSKATIIA 112
                +GA   +V+ +    I    +P   V++    LGAL K  +  R  L S  T+I 
Sbjct: 60  PKVGAQGAVAALVDHE----IAGAQVPQIVVENTVKALGALAKHNIERRRALESPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK++L   LS +  T A +GS+NN IG+PLT  ++     F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSE---QSWMEVQLQGKSMEVVHH 286
             + A + A     +  FG  +  D QL       +C +    S++     G+   V   
Sbjct: 236 AAMSAIAPA----DVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLG 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDES 345
             G H   N L    +   L   +D     LS V      R         +  FTLID+S
Sbjct: 292 ICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDS 351

Query: 346 YNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDL 392
           +NANP SMKA +  LS+     E +  RIAVLG M E+G      H D+
Sbjct: 352 FNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDV 400


>gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 488

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 215/459 (46%), Gaps = 31/459 (6%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           GI P   V     DSR       + A  G + DGHDF+  A   GA L +V   +++  G
Sbjct: 22  GITPLSVVT----DSREATQGSLYVAKPGENADGHDFVGSAFAAGATLALVEHPVLSPDG 77

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIAL 130
           +   P   V D + A+ KLA  +  R +A         T+I ITGS GKTTTK++L   L
Sbjct: 78  T-PYPSVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVIGITGSAGKTTTKDLLAGIL 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S+   T A  GSYN  IGVPLT+     D  + + E+G + +G I +L  +V+P I V+ 
Sbjct: 137 SAHGTTVAPKGSYNGEIGVPLTVFTAGTDTRYLVIEMGATGIGHISYLVDMVKPDIGVVL 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH   F G+E IA AK E+ EGL  +GT  +N DD     ++A++ A  +    + 
Sbjct: 197 AVGTAHAGEFGGVENIAQAKGELVEGLAASGTAIINLDDERVAAMQARTSA-SVLGFTAE 255

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306
           G+   A   L            ++ L G   +  HH     IG H   N+L         
Sbjct: 256 GRPGAAVQALNADTNAEGNPEFDLLLPGG--DTPHHVSSRLIGAHHTGNLLAAAAAAWAA 313

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  I A         R +  R     G  T+I+++YNANP SM+AA+  L+ +   
Sbjct: 314 GVSGED-IAAALSSQAAASRWRMERTERADG-VTIINDAYNANPESMRAALRTLADL--- 368

Query: 367 GEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421
           G+GRR  AVLG M E+GE S   H  +   +   NIS + + G    AL  +  +     
Sbjct: 369 GQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREARALYVSAVQEGSWG 428

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
               ++E  +  +  + + L  GD+V+ KSSNS G   L
Sbjct: 429 DECIFAEDAEEAYELLSAELEPGDLVLFKSSNSVGLRHL 467


>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus
           cereus Q1]
 gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus Q1]
 gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 226/465 (48%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419
              G  ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P
Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V   +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLIKASRGMKLEEVITML 457


>gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 189/401 (47%), Gaps = 19/401 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L  AI    IG    G V  ++ D+R + P   F A++G  +DGHDF   A++ GA
Sbjct: 5   TLQTLADAIGATLIG--ADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALEGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++VN  +     +L +P   V D   AL +L    R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVNRRL-----ALDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G+ NN IGVPLTL R+    DF + ELG +H+GEI +   L RPH
Sbjct: 118 SAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +E   +  HAL  +
Sbjct: 178 SALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIVNVDSNDWE---SWQHALTEQ 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ F     A  DF     +  +  +   +        V+    G H   N L    + 
Sbjct: 235 RVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAAALT 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +    + L+      GR    R    Q    L+D+SYNAN  SM AA  VL  +
Sbjct: 295 MSVGASLTQVQQGLAGLQAVPGRLFPIRLGEQQ---LLLDDSYNANVGSMSAAAEVLGNM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                G R+ V+GDM E+G  +++ H  + +      I  V
Sbjct: 352 P----GYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKV 388


>gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
          Length = 446

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 177/366 (48%), Gaps = 30/366 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89
           +DSR   P   F A  G H DGHD+   A + GA         VA +GS   S+P   V+
Sbjct: 30  LDSRQAEPGGLFVAFAGEHADGHDYAERAGRAGA---------VAVLGSRPTSLPTVVVE 80

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           DV  AL  LA  V ARLR   T++ +TGS GKT TK++L   LS    T A  GS NN +
Sbjct: 81  DVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSGAGPTVATTGSLNNEL 140

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R      F + E+G  H G+I  LT LV P IAV+  +  AHL  F     IA
Sbjct: 141 GVPLTMLRAQAATRFLVLEMGARHEGDIAELTGLVAPDIAVVLNVGVAHLGEFGSRAAIA 200

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265
            AK E+ +GL   GT  LN DD       A    L    + +FG++  AD Q+      +
Sbjct: 201 RAKGELVQGLVPGGTAVLNADDPRV----ASMSVLTDGPVLTFGRTDPADVQVLDVVLDR 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV--FHPK 323
               S   ++    S  +    +G H A N              +D A  AL+     P 
Sbjct: 257 LGRPSCT-LRTVDTSARLALPLVGAHQALNASAAAAAALAAGVPLDLATTALTTASLSPW 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
               +   C       TL+++SYNANP S +AA+  LS I     GRRIAVLG+M E+G+
Sbjct: 316 RMELRDLACG-----ATLLNDSYNANPDSTRAALDALSAIE---GGRRIAVLGEMLELGD 367

Query: 384 LSQSFH 389
            S++ H
Sbjct: 368 GSEAEH 373


>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coprococcus catus GD/7]
          Length = 456

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 216/455 (47%), Gaps = 38/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q    G+ IDSR I P   F A KG   DGH FI     KGA  V+        +G    
Sbjct: 26  QETAKGVVIDSRQIEPGYIFVATKGERVDGHRFIPDVFAKGALAVICEVLPEEDLG---- 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V+D   AL + A   R +    ++ ITGSVGKT+TKE +   L    K +   G+Y
Sbjct: 82  PCILVEDSFMALKQAAAFYRQQLNIRVVGITGSVGKTSTKEFIAAVLVEKYKVHKTAGNY 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+PLT+  +  D    + E+G++  GE+  L+ + RP I V+T I   HL N    
Sbjct: 142 NNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEVARPDICVMTNIGQCHLENLIDR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + I  AK+EIF+ +   GT+ +N DD       A  H +  K   +FG +K+       W
Sbjct: 202 DGILRAKSEIFDFMNPEGTVIVNGDDDKL----ATIHDVYGKAPITFGMNKDNAI----W 253

Query: 264 KQCSEQSWMEVQLQGKSMEV------VHHGI---GYHMAQNML--MTLGIVSILTADVDT 312
               E       L G   ++      VH  I   G HM  N +    +G+   +T +  T
Sbjct: 254 ADHIENRG----LLGSRADIHMGDVLVHANIPLPGEHMIYNAMAAAAVGVQFDMTKEEIT 309

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A     + H +   G+ +   +  G   +ID+ YNANP SMKAAI +L+  +P   GR++
Sbjct: 310 A----GISHVEAVAGRSH--LIEAGDKVVIDDCYNANPVSMKAAIDLLA-TAP---GRKV 359

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPRSIHVHYSETMD 431
           A+LGDM E+GE  ++ H ++ +  +   I  +  + G      + A  +     + E  +
Sbjct: 360 AILGDMFELGENERAMHREVGQYAAEKGIDLILCVGGLSSEMYEGAAEKGGEARHFEIRE 419

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L   +Q  L  GD V+VK+S+S  F  ++  + E
Sbjct: 420 ALEAVLQDLLQPGDTVLVKASHSMAFENIVQNIQE 454


>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
 gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
          Length = 536

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 195/396 (49%), Gaps = 36/396 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82
           N +  DSR I     F AI G H DGHD++ +A + GA + +V      T++   + + S
Sbjct: 56  NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVEGTNLNQIVVNNS 115

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           I   G    L A + L +   L    TII ITGSVGKTTTK+ML   LS++ +T A +GS
Sbjct: 116 IEALG----LLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVAPVGS 171

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN+IG+PLT  ++  +  F I E+G +H+GEI  LTH+  P +A++  +  AHL  F  
Sbjct: 172 FNNNIGLPLTALQVGSNTRFLIAEMGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGS 231

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNA----- 256
           +E IA AK+EI  GL   G   LN DD   + + A S  +  K +  FG++ KN      
Sbjct: 232 VERIAQAKSEIVRGLLPHGIAVLNSDD---KRVSAMSCLVENKHVRWFGRNVKNGLLESA 288

Query: 257 ---DFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVS 304
              D+QL     K     +  +   +    S  + H  +     G H   N L    +  
Sbjct: 289 SKDDYQLSASNIKLDSFGKAVFTTTERSNSSDLMNHIEVHLAIQGEHNVMNALAAANVAR 348

Query: 305 ILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--- 360
            L   +D     LS V H    R +    + N   FTLID+S+NANP SMKA I  L   
Sbjct: 349 YLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAY 408

Query: 361 --SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                S   +  RIAVLG M E+G      H ++ E
Sbjct: 409 ENDSCSASSKPFRIAVLGSMLELGSNEDELHTNIGE 444


>gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 452

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
 gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
          Length = 423

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 30/438 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ DSR I P   FFA+KG +++G+ +   A++KGA   +V+     +    S     V
Sbjct: 14  NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVT----SEQTILV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L +L KLA   R +    II++TGS GKTTTKE++   LS    T A  G+ NNHIG
Sbjct: 70  NDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLNNHIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  D + GI E+G +H  EI FL+ +  P    IT    AHL  F GIE +  
Sbjct: 130 VPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGYITNFGKAHLEGFGGIEGVII 189

Query: 209 AKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E+++ L+ +   IF+N DD+     K         T Y FG S   D  +   +  +
Sbjct: 190 GKSELYDYLKASDKFIFVNGDDT-----KQVERTQDANT-YVFGGSDTYDLSI---EFLT 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               +   + GK ++     IG +   N+   + I +    + D   +A+  + P   R 
Sbjct: 241 ANPMVSCAVDGKKIQ--SQLIGSYNFSNIAAAIAIGTYFKVNSDDIKEAIEAYIPSNNRS 298

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N+    +I ++YNANP SMKAA+   S ++   +  +IA LGDM E+G+ ++ 
Sbjct: 299 QILTKNTNK----IILDAYNANPTSMKAALDNFSDLT---DTSKIAFLGDMFELGDSAKE 351

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDV 446
            H  + +  +   I  ++L G +   + ++    I +H + E++   F  +++S      
Sbjct: 352 EHQFINDYAASLEIEKIYLIGEN-FGITNSTNEKIVIHSTFESLKENFPALENS-----T 405

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      R++ LL
Sbjct: 406 LLIKGSRGMALERILELL 423


>gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
 gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
          Length = 458

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 214/449 (47%), Gaps = 33/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+RS+ P + F A++G H+DGH +I  A++KGA  VVV+T        +++P + V 
Sbjct: 24  VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDTVQA----EIAVPQWVVK 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + AL  +A   R   +  ++ +TGS GKT+ K ML         T A  G+ NNHIGV
Sbjct: 80  DTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCRQAGPTVATAGNLNNHIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+     F I E G S  GEI +LT L++P +A++  + PAH++ F  ++ IA  
Sbjct: 140 PQTLMRLEQQA-FAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAHMAGFGSLDAIAQE 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-----KNADFQLRKWK 264
           K +I+ G      + +N DD++ +   A++   GI TI  F  S     KN+      + 
Sbjct: 199 KGDIYGGSNLRCAV-INLDDNYAQEFLARNG--GITTI-GFTASPIQYEKNSGVDTLIYG 254

Query: 265 QCSEQSWM-----EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +C     M     ++ L+G    V     G H   N L        L    +   K +S 
Sbjct: 255 ECLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAHELIAKGVSQ 314

Query: 320 FHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           F    GR +R   +C       TLI+++YNANP SM+AA + L+          + V+GD
Sbjct: 315 FQGVAGRMQRVSTKCC-----HTLINDTYNANPGSMRAAANYLAHAK-----HSVMVVGD 364

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G    + H DL        I +++  G   L+ +          + E    L   +
Sbjct: 365 MGELGSDELAQHFDLGRYAKSQKIKNLFAVG--ELSKQTVAGFGEGATWFEDKVALASAL 422

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           Q   +   VV+VK S S     +I LL++
Sbjct: 423 QQQDLSDAVVLVKGSRSAKMEEVIELLVK 451


>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
 gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 456

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 218/455 (47%), Gaps = 33/455 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + GI  DSR IA    F A++G  +DGH F+  A   GA  ++V   +     S  
Sbjct: 28  PNLPITGICTDSRQIAAGNLFVALRGETFDGHQFVDQAAAAGAIALMVEAPL-----SSD 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P   V + L A  +L    R +  A +IA+TGSVGKTTTKEM+   LS          +
Sbjct: 83  LPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGKTTTKEMIAAVLSHYGAVLKTEAN 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVP TL ++     F + E+GM   GEI  L+ + +P +AVIT +  AH+     
Sbjct: 143 FNNEIGVPKTLLQLEPHHQFAVIEMGMRARGEIALLSQIAQPDVAVITNVGTAHIGRLGS 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA AK E+   +   GT  LN D     LL   +     +TI ++G        LR 
Sbjct: 203 REAIAQAKCELLAEMPPGGTAVLNADSPL--LLPTVAQVWSGRTI-TYGLEGGT---LRG 256

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             Q  +     + + G++  V     G H A N L  LG++  L  + D     L++  P
Sbjct: 257 IYQPPQ----TLHVGGRTYTVPL--AGAHHALNFLAALGVLQALDVESDRLPVQLTLELP 310

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GRG RYR   +     L+DE+YNA   SM AA+ +L  +      R +AVLG M E+G
Sbjct: 311 S-GRGGRYRLEPD---ILLLDETYNAGLESMVAALHLLRSLPGQ---RHLAVLGPMRELG 363

Query: 383 ELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA---LPRSIHVHYSETMDGLFLFI 437
             S SFH  +   ++  ++  +++   G    AL      +P      + E ++ L   +
Sbjct: 364 AFSLSFHEQVGATVAQLDLDGLFILDQGEEGAALAQGAGQIPTQQFGSHEELVEYLLREL 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           Q+    GD ++ K+S++    R++N L + +P +Q
Sbjct: 424 QA----GDRLLFKASHAVALDRVVNQLRQRWPKLQ 454


>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 458

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I        
Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P    V  
Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPNE-RVKA 419

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
 gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
          Length = 452

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 458

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 218/441 (49%), Gaps = 17/441 (3%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+SID+R +     +  I+G  +DGH F+  A++ GA   +   D+     ++  PV  V
Sbjct: 29  GVSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESGAVATLWKRDVQNPPANM--PVIFV 86

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L AL  LA   R +    ++ +TGS GKT+TK+++T  L++  K     G++NNHIG
Sbjct: 87  EDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNHIG 146

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PLT+  +  D +  + E+GMS  GEI FL+ L RP+ A+IT I  AHL +    + IA 
Sbjct: 147 LPLTILNLEEDTEIAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAE 206

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI  GL++ G    N D+      +     L ++TI +FG ++  D+        + 
Sbjct: 207 AKLEIVTGLQEGGVFVYNGDEPLL-TNRVPKMDLAVETI-TFGDARANDYY---PTSVTL 261

Query: 269 QSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           Q+        +   V+ +   +G H   N L ++ I        +   + L         
Sbjct: 262 QATGTHFTMNRDENVLFYLPVLGKHNVYNALASMAIAKYFGVTWEEMKQGLVTLQMT--- 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R          T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+   
Sbjct: 319 GMRMEVVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAKKIVVLGDMLELGDQEV 376

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS--SLVD- 443
            FH ++ +++    IS+V+  G     + +    +      +  D     +++   +VD 
Sbjct: 377 QFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVKNLKDIVDM 436

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            DVV+VK+S       +I +L
Sbjct: 437 EDVVLVKASRGMKMEEIITML 457


>gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
 gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
          Length = 427

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 217/439 (49%), Gaps = 29/439 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  D+R I     FFA+ G +++G+ F   A++ GA  VV++      +   +I     
Sbjct: 15  GICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGETILT--- 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  L KLA   R      I+A+TGS GKTTTKE++   LS    T A  G+ NNHIG
Sbjct: 72  DNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  + + GI E+G +HL EI  L H+ +P+   IT    AHL  F  +E +  
Sbjct: 132 VPLTLLSMTKETEIGIVEMGANHLKEIETLCHIAQPNYGYITNFGKAHLEGFGSLEGVIK 191

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K E+++ + K+ G +F+N +D+   EL K +         Y+FG   N D +++  +  
Sbjct: 192 GKTELYKHIVKSDGLLFVNANDAKQLELTKKEKR-------YTFGNEGN-DCEIKLLEAT 243

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   + +  QG+S+    + IG +   N+   + I            +A+  + P   R
Sbjct: 244 KE---LIISYQGQSIN--SNLIGLYNYHNIAAAIAIGQYFKVSATKVKEAIEEYIPTNNR 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     + Q   T+I ++YNANP+SM AA+    Q   +    +I +LGDM E+GE + 
Sbjct: 299 SQ----IIKQNGHTIILDAYNANPSSMTAALDNFKQTVGN---NKILILGDMFELGETAS 351

Query: 387 SFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             H  +A+ +S  NI + V+L G +   +K     + H+H   T + L   ++    +  
Sbjct: 352 KEHQAIADKISSQNIGNTVYLVGENFSKIK---TDNKHMHLCPTFEALQSNLKHQKPNNA 408

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      R + LL
Sbjct: 409 TILIKGSRGMALERTLKLL 427


>gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
 gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
          Length = 1056

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 201/402 (50%), Gaps = 12/402 (2%)

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            K AG +    D+ +       PV  V D + A+  +   AR R   +++A+TGS GKTT 
Sbjct: 657  KPAGFMTTEPDLASGQQG---PVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAGKTTV 713

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              ML  ALS+         + N   GV   LA +P +    + EL    +G++     + 
Sbjct: 714  VAMLAHALSAWGNVAKSNHNANLPAGVAWNLASIPWETPHVVLELA---IGKMAISARMA 770

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RP +A+ T + PAHL   S + +IA  K+ IF G+E   T  LN D   ++ +   +   
Sbjct: 771  RPKVAIFTNVLPAHLGEKSTVTDIARTKSAIFLGMEPGDTAVLNRDMLEWDTVHDAASRR 830

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++ I ++G S+    QL ++   S  +    +++ + +  +    G HMA N L  L  
Sbjct: 831  KLE-IVTYGTSEECMCQLLRYDAASRHA--HARIRNREVSFLIGAAGSHMALNGLAVLAA 887

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +S+L   ++ AI  L  F    GRG+     L+    T+ID++YNANP SM+AA   L++
Sbjct: 888  ISVLGHPLEPAIAQLESFAALPGRGEEIHLLLDGRRLTVIDDAYNANPGSMRAA---LAR 944

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +  H  GRRIAVLG+M E+G    ++H +LA  +   +I  V+++G        AL  S 
Sbjct: 945  LGDHIGGRRIAVLGEMAELGPGRAAYHTELAAFIQDRSIDEVYVTGDLYSDFWKALSPSS 1004

Query: 423  HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               Y+E+   L   ++  LVDGD V+ K S+S G + L+  L
Sbjct: 1005 RGLYAESRQALKEILRERLVDGDTVLFKGSHSTGMHELVEWL 1046


>gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase
           [Clostridium sticklandii DSM 519]
 gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Clostridium sticklandii]
          Length = 457

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 176/359 (49%), Gaps = 20/359 (5%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + + AIKG ++DG+DFI  A+   A +++ N        S +  V  V+D +
Sbjct: 32  DSRKIQENDCYIAIKGENFDGNDFIEQAINNKASVILSNRQ------SSNKEVITVEDTV 85

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  +A    ++     +A+TGS GKTTTK+ML    +    T+   G+YNN IG+PLT
Sbjct: 86  IALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYVFNEHFSTHRTDGNYNNEIGLPLT 145

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    +  IFE+GMS LGEI +L  +VRP+IA+IT I   H+      E I  AK E
Sbjct: 146 ALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNIAIITNIGSCHIEILKSQENIFKAKME 205

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQS 270
           I   L     + +N DD +   L    +   +   Y FG+    + QLR   +K    QS
Sbjct: 206 ISNYLNNDDYLIVNGDDKYLTSLSENEYKFNL-IKYGFGE----ECQLRASDYKAVDGQS 260

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V   G +       IG H   N L  +    I     +     L  F P + R +  
Sbjct: 261 EFWVTGMGINRRFTLPAIGLHNVSNALSAIAAGLIYKIPTEKIQAGLMKFQPSKLRMQ-- 318

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              L +     I++SYNANP SM+A   V++    +  GR+IA+LGDM E+GE S + H
Sbjct: 319 --ILEKNNIKYINDSYNANPESMEA---VITSFESYARGRKIAILGDMLELGEFSVAAH 372


>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 462

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 226/468 (48%), Gaps = 31/468 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA L 
Sbjct: 8   EIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALC 67

Query: 69  VVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +V +++  S G +  S  V  V++   AL  LA   R +    ++AITGS GKT+TK+++
Sbjct: 68  IV-SEINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLV 126

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P I
Sbjct: 127 GAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPDI 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I  +H+ N    E I  AK E+ +   K   + +N DD F    ++         
Sbjct: 187 AIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNFESDKF-----K 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLG 301
           +Y  G  K  DF        +E    ++  QGK+    + G      G H   N L  + 
Sbjct: 242 VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT---AYKGFSVNVPGKHNVLNSLTAIA 298

Query: 302 I---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               + I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKAAI 
Sbjct: 299 CGRALDINYKDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAAID 351

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           V+  I      R IA+LG M E+G      H +++E      I  ++  G    A ++  
Sbjct: 352 VMKNIKGK---RTIALLGSMRELGNEGYRAHREVSEYAREKGIDLLFSIGEFGEAYREGF 408

Query: 419 PRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 409 GEINKENYKSFLNNKEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
 gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
          Length = 452

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    L+    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ HI + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
 gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
          Length = 458

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%)

Query: 12  QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA   + 
Sbjct: 11  QMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D+     +L  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+++T  L
Sbjct: 71  MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+ A+IT
Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +T+ +F
Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G ++  D+        +  +  ++  + +++      +G H   N L ++ I        
Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L         G R          T+I+++YNA+P +M+AA  +++ +   G  +
Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426
           +I VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P    V  
Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPNE-RVKA 419

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  + L   +Q+ +   DVV++K+S       +I +L
Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Photorhabdus asymbiotica]
          Length = 459

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 21/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++  ++ D+R +     F A+KG  +D HDF   AV+ GAG +     +V+ + +++ P 
Sbjct: 29  YIRDVTTDNRKVENGSLFIALKGERFDAHDFSADAVKAGAGAL-----LVSRVLAINCPQ 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   A+ KLA   R +SKA ++A+TGS GKT+ KEM    L     T    G+ NN
Sbjct: 84  VVVEDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+    +F + ELG SH+GEI +   +VRP  A++  +  AHL++F  +  
Sbjct: 144 DIGVPLTLFRLTEQHEFAVVELGASHVGEIAYTVEMVRPETALVNNLFAAHLADFGSLAS 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR-- 261
           IA AK EIF GL + GT  +N + + +   +     +G KT+  +S  ++  ADF     
Sbjct: 204 IAKAKGEIFTGLPEKGTAIINVESNDWAYWQ---QVIGDKTVQRFSMQQASGADFYATDI 260

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + KQ +    +   +   S E+     G H   N L    +   + A +      LS   
Sbjct: 261 QVKQLTTDFCLHTPI--GSTEINLPLPGKHNVANALAASALAISVGATLRDIRLGLSELR 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR   +   L +G   L+D++YNAN  SM  A+ VLSQ+     G R+ V+GD+  +
Sbjct: 319 AVPGR--LFPINLAEGKL-LLDDTYNANVGSMTVAVQVLSQMP----GYRVMVVGDIGAL 371

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           GE S+ +H  + E  +   I  V+  G
Sbjct: 372 GEQSEDYHRQIGETAASCGIDRVFSVG 398


>gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TW10509]
          Length = 452

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
 gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
          Length = 452

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMAVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    +   NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLVENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ HI + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 226/463 (48%), Gaps = 17/463 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA  V
Sbjct: 8   EIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAV 67

Query: 69  VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    D +  +      V  V+D L AL+K+A   R +     +A+TGS GKTTTK+M+ 
Sbjct: 68  LTARLDNIEYLRDFPFNVIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGKTTTKDMIA 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L ++V+P +A
Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLKNIVKPQVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T I  AH+      E I  AK E+ E  ++   I LN DD     +  +  +      
Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQYSS----KY 243

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G  KN + +    ++  +     ++ +    E+     G H   N L  + +     
Sbjct: 244 YRYG-IKNGEIKACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEFG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            DVD   + L  F P    GK     + +G   +ID++YNANP SMKAA++VL       
Sbjct: 303 VDVDDMAEVLKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNVLRDFPGK- 357

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH 423
             R+IAVLGDM E+GE S   H ++ ++++  +I  +  SG    +     K    +  +
Sbjct: 358 --RKIAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGNTSKYIAEESKVCGMKENN 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    T + +   ++  + +GD+++VK S      +++  L E
Sbjct: 416 IFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQE 458


>gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
 gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
          Length = 452

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLYPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
 gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
          Length = 468

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 220/447 (49%), Gaps = 21/447 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           I+ D+R +   + F A++G ++DG  F   A+++GA  V+V+    AS+  +L+    GV
Sbjct: 31  ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90

Query: 89  ---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +D L A   +A A R++    ++AITGS GKTTTK++    LS   K      +YNN
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G+PLTL  +  +    + E+GM  +G+I  L  +  P I ++T +   H+     IE 
Sbjct: 151 EVGLPLTLLSITPEDTAAVVEIGMRGMGQIAALAPIAEPSIGIVTNVCEVHMELLGSIEN 210

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AKAE+   +   GT+ LN DD     +++ S A G++ + ++G S  AD +    + 
Sbjct: 211 IAKAKAELVTAIPAGGTVILNADDPRVAGMRS-SAADGVR-VMTYGISAAADVRAEALQC 268

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++ S   V   G+  E      G H   N L  L    +L        + L+    ++ 
Sbjct: 269 MADGSRFMVTWGGERHEYAISLPGRHNVSNALAALAAGFVLGMTPQEMQEGLTHLTAEKM 328

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R + ++     G +TLI+++YNA+P+SM+A++   + + P   GRR+AVLGDM E+G  +
Sbjct: 329 RYEVHQV----GAWTLINDAYNASPSSMRASLETTAALYP---GRRVAVLGDMLELGTAA 381

Query: 386 QSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           ++ H D+   ++    + V   G      H  A     P   H            +++  
Sbjct: 382 EAAHRDVGRRVAELGFAMVVTYGRQAQWTHETAEAAGCPDCCHAASHADA---AAYLRRH 438

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L+DGD V+ K S      ++I  L  E
Sbjct: 439 LMDGDTVLFKGSRGMRMEQIIAALTGE 465


>gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UTI89]
 gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli APEC O1]
 gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
 gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli UTI89]
 gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli APEC O1]
 gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IHE3034]
 gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UM146]
 gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 110-3]
 gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 16-3]
 gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H252]
 gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H263]
 gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
          Length = 452

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechocystis sp.]
          Length = 454

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 211/449 (46%), Gaps = 33/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  D+RS+   + F A++G  +DGH FI  A+  GA + VV    V  +G  ++  F
Sbjct: 30  INNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGA-IAVVTDRPVEGLGE-TVAQF 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A   +A   R R    II +TGSVGKTTTKE++   LS     +    +YNN 
Sbjct: 88  LVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFGNVHKTRANYNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL  +  D DF I E+ M   G+I  L  + +P I +IT +  AH+        I
Sbjct: 148 IGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGSELAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+        T  LN D           +AL ++T   F + K   + L      
Sbjct: 208 AEAKCELLAHQPPESTAILNRD-----------NALLMETAQRFWQGKTITYGLEGGDVH 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  + L G S+ +   G+  H A N L  + +   L  D       L+V  PK GR
Sbjct: 257 GTVDGENLILDGVSLPLPLAGV--HNASNYLAAIALAQCLGLDWQQLQSGLTVELPK-GR 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +RY+   +     L+DE+YN    SM A++ +L+        RR+AVLG M E+G+   
Sbjct: 314 ARRYQWGQD---VVLLDETYNDGLESMLASLDLLANTPGK---RRLAVLGAMKELGDYGP 367

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALK---DALPRSIH-VHYSETMDG--LFLFIQSS 440
           +FH  +        +  + L G  +LA     DA+    + V      DG  L   ++++
Sbjct: 368 TFHQRVGA-----KVKALGLDGLFLLANDPNTDAIAAGANGVETQSFSDGPSLVAALKTT 422

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           L  GD ++ K+SNS G   +++ LL E P
Sbjct: 423 LQPGDRLLFKASNSVGLGAVVSQLLAENP 451


>gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei Ss046]
 gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii Sb227]
 gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ATCC 8739]
 gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SE11]
 gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sp. D9]
 gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046]
 gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227]
 gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli ATCC 8739]
 gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11]
 gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)]
 gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli BL21(DE3)]
 gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Escherichia coli 042]
 gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli W]
 gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 85-1]
 gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           dysenteriae CDC 74-1112]
 gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           flexneri CDC 796-83]
 gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli EC4100B]
 gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli EPECa14]
 gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E128010]
 gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LT-68]
 gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1180]
 gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1357]
 gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli KO11]
 gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H120]
 gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H489]
 gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TA007]
 gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 117-3]
 gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1167]
 gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 5216-82]
 gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 3594-74]
 gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Escherichia coli UMNK88]
          Length = 452

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 459

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 215/445 (48%), Gaps = 19/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR + P   F  IKG   DGH FI  A+Q GA   +   D         +P  
Sbjct: 26  VTSVQFDSRQLTPGSLFVPIKG-QRDGHQFIEQAIQAGAVATLWAKDH-EDTRPADLPSI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL KLA     +    ++AITGS GKTTTK+M    L++         ++NN 
Sbjct: 84  EVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLATEFNVVKTEANFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + ELGM   G++ FL+ LV+P IAVIT I  AH+  F   + I
Sbjct: 144 IGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL++ G    + D+    LL  ++ A+ ++   +FG     D         
Sbjct: 204 ADAKMEITDGLKEDGCFIYDGDEP---LLAERAKAVDVEQ-RTFGMKNENDVFASDVAGT 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             ++  ++ L  + +EV    IG +  +N L  + +       V  + +AL+ F+  + R
Sbjct: 260 DTETSFKINLDPE-VEVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNR 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    QG   L D  YN+NP + KA ++  +       GRR  VLGDM E+GE + 
Sbjct: 319 TEWLKG--RQGERILSD-VYNSNPTAAKAVLNSFAHTKKT--GRRFVVLGDMLELGENAD 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439
             H  LA+ L+      V+L G H+ AL   L         ++H++ +  +  L   +Q 
Sbjct: 374 QMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQ 433

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            +   D V++K+S+     +++  L
Sbjct: 434 MIKADDCVLLKASHGIHLEKVVEQL 458


>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
 gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 207/445 (46%), Gaps = 22/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ + IDSR +     F AI+G   DGH FI   ++ GA   +        I + S P  
Sbjct: 28  VSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIRDGALCALSEK----RIENASYPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  +A   R      ++ +TGSVGKT+TKEM+   L          G++NN 
Sbjct: 84  LVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTSTKEMIASVLGEKYNVLKTAGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + ELG+S+ GE+  L  + RP I VIT I  AHL +    + I
Sbjct: 144 IGLPLTIFNIREEHEVAVLELGISNFGEMERLAKIARPDICVITNIGVAHLEHLKSRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EIF  +   G+I LN DD   + L     A GI+ ++ FG   + DF   + + C
Sbjct: 204 LKAKTEIFLYMNPNGSIILNGDD---DKLSTVHPANGIQPVF-FGLDDSRDFYADQVESC 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324
             +    V     S    H  I G HM  N L  +     L  + D  IKA +    P  
Sbjct: 260 GLRGTNAVFHTPNSTFSAHISIPGEHMVLNALAGIAAGYALGMN-DEEIKAGIEALVPLA 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR       +     T+ID+ YNANPAS KA++ VL++     + R+IAVLGDM E+G  
Sbjct: 319 GRNN----LIETDSLTIIDDCYNANPASTKASLDVLAK----ADTRQIAVLGDMFELGPT 370

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +  H ++ +  +   I  +   G    H+            V Y ET D  F      L
Sbjct: 371 EKQMHYEVGKYAAGLGIDILVCIGQLSEHMATGASEQCSKTQVFYFETKDDFFEQADRIL 430

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466
              D V+VK+SN   F  ++++L E
Sbjct: 431 NPKDTVLVKASNGMKFSEIVSVLKE 455


>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halorhodospira halophila SL1]
 gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Halorhodospira halophila SL1]
          Length = 450

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 200/438 (45%), Gaps = 28/438 (6%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V G+++DSR       F A+ G   DGHDF   A  +GA + V+ T  V ++     P
Sbjct: 23  GAVTGVALDSRRATSGSLFVALPGARCDGHDFADDAAARGA-VAVLGTRPVGAL-----P 76

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V+D   AL  L    R RS   ++A+TGS GKTT KE+L   L+    T A  G+ N
Sbjct: 77  TLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKTTVKELLAAMLAESGPTLATEGNRN 136

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N +GVP  L R+     F + E+G +  GEI  LT   +P + V+T   PAHL  F  ++
Sbjct: 137 NLLGVPEMLCRLGAGHRFAVIEMGANAPGEIAQLTAWAQPDVGVVTNAGPAHLEGFGSLD 196

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A AK E+F+GL + G   LN DD F  L +  +   G +   +FG          +++
Sbjct: 197 GVARAKGELFQGLPRQGVAVLNADDDFCGLWREMA---GARRCLTFGADAG------QFR 247

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S +E+ L G  M      +G H AQN+       + L     T +  +S      
Sbjct: 248 HRGHGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAACAAALEVPARTILDRISSAAAVP 307

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLGDMCEMG 382
           GR +  R   + G + L+D++YNANPAS++AAI  ++  Q +P        +LG M E+G
Sbjct: 308 GRLELRRG--DHGGW-LVDDTYNANPASLQAAIDTVTGFQAAPW------LLLGAMGELG 358

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +  +H           +  +W  G       +A          +    L    ++ L 
Sbjct: 359 AETAEWHSRAGRRARAAGVERLWTLGEAAAPAAEAFGEGGRCF--DNASALIEACRAELP 416

Query: 443 DGDVVVVKSSNSCGFYRL 460
              VV++K S S    R+
Sbjct: 417 ADAVVLIKGSRSAAMERV 434


>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
 gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
          Length = 451

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 217/445 (48%), Gaps = 32/445 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  DSR++   E F A++G  +DGH F+  A+ KGA   +V+ +      +   PV  V
Sbjct: 32  GIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIAKGAIAAIVDFEY----ENPGFPVLRV 87

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L A  ++    R R    +I +TGSVGKTTTKE++   L +  + +   G+YNN IG
Sbjct: 88  KDTLKAYQQIGRWWRDRFNIPVIGVTGSVGKTTTKELIAAVLGTKGQVHKTYGNYNNEIG 147

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL  +  + D+ + E+ M   G+I  LT + RP I VIT +  AH+      E IA 
Sbjct: 148 VPKTLLELGAENDYAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAE 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+   +       +N+D+    LL A +  +    + ++G S   D Q     Q  +
Sbjct: 208 AKCELLAEMAADSVAIINHDNP---LLMATAAKVWHGEVLTYGFS-GGDIQ----GQLLD 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              MEV      +++     G H A N L  L +  +L  D       + V  P  GR +
Sbjct: 260 NDQMEV----AGIQLPLPLPGRHNATNFLAALAVAKVLGIDWSNLKAGVEVDMPT-GRSQ 314

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+    +     ++DE+YNA P +M A++ +L+        R+IAVLG M E+GE SQ  
Sbjct: 315 RFTLPND---VIILDETYNAAPEAMIASLQLLADTPGK---RKIAVLGAMKELGERSQQL 368

Query: 389 HIDLAEVLSLYNISH--VWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           H  + E +   N+    V + G    A+    + +P      ++E +  L  F+Q+    
Sbjct: 369 HQRVGETVRKLNLDGLLVLVDGEDAEAMALSAEGIPSECFATHAELVARLKTFVQT---- 424

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
           GD ++ K+++S G  R++N L  EF
Sbjct: 425 GDRLLFKAAHSVGLDRVVNQLRAEF 449


>gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 455

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/431 (32%), Positives = 213/431 (49%), Gaps = 33/431 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GISID+R+I   + F   +G   +GH F+  A +KGAG  +   D         IP+ 
Sbjct: 24  VSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGAGASLWQKDEPNP--PEGIPLL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL ++A A R   KA  I ITGS GKT+TK++L   L+   K    IG++NN 
Sbjct: 82  FVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGNFNNQ 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+P+T+ ++  D +  + E+GMS  GEI FLT L +PH+ VIT I  AH+ +      I
Sbjct: 142 LGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGI 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +G++  G +F + D+   + L AK   L      +FG   N           
Sbjct: 202 AQAKFEIIQGMQPDGLLFYDGDEPLLQELVAKEMHL---NAVAFGLEPNNLLYADHIHAN 258

Query: 267 SEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFH 321
           +  S       ++G     V   +G H  +N L+ + I   + +    + T+++ + +  
Sbjct: 259 ANGSSFTTHGMIEGDFFISV---LGKHQVKNTLVAMLISHQLGLKNEQIRTSLEHVVLTD 315

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMC 379
            +  + +    AL       I+++YNA P S+KAAI  +  S I P     +  VLGDM 
Sbjct: 316 MRMQQVQGTNGAL------FINDAYNAAPTSVKAAIQFIATSTIRP----EKWLVLGDML 365

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVH--YSETMD 431
           E+G   Q FH  LAE +    I +V L G      + VL  +    R ++    Y+  ++
Sbjct: 366 ELGPDEQRFHEGLAEEIDEQEIDYVCLFGPRMTHLYEVLKERFGAERLLYAEDDYTAIIE 425

Query: 432 GLFLFIQSSLV 442
            L L  +SS+V
Sbjct: 426 KLKLANESSIV 436


>gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 454

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 215/448 (47%), Gaps = 35/448 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     I   P  
Sbjct: 29  IEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFESGA---------VATFSEKEISGHPYL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  KLA     + +  +IA+TGS GKT+TK+M+   L++  KTY   G+YNN 
Sbjct: 79  LVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+G  HLG+I  L+ + +PHIAV+T I  AHL  F   E+I
Sbjct: 139 IGLPYTVLHMPDDTEKIVLEMGQDHLGDIHLLSEIAQPHIAVVTLIGEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G+   G +    D      L         + +  FG+++    +  +  + 
Sbjct: 199 AQGKMQITDGMNSHGILIAPGDPIIDPYLPEN------QMVIRFGENQEIFVKSIEESKN 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S      V  Q  ++ +     G + A N ++   +  +L    +  I+AL        R
Sbjct: 253 SLSFTTNVLNQALTLPLS----GKYNATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   +QI+P+ +G++IA+L DM E+G  S 
Sbjct: 309 TE-WKKASNGA--DILSDVYNANPTAMRLILETFTQIAPNQDGQKIALLADMKELGPSSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKD------ALPRSIHVHYSETMD---GLFLFI 437
             H  L E L+  +I+H+   G  + AL         + +      ++T D    L   +
Sbjct: 366 DLHCQLIEALNPDDINHLIFYGKDIEALAQLASQLYPIGKVFFFRKTDTEDQFEDLCHHV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           Q  L   D ++VK S+S     ++N LL
Sbjct: 426 QEILGANDQILVKGSHSMNLEEVVNRLL 453


>gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 184/380 (48%), Gaps = 17/380 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F A++G ++DGHDF   A + GAG ++VN  +     +L +P  
Sbjct: 24  VTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQAREGGAGALLVNRRL-----ALDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L    R +  A ++A+TGS GKT+ KEM    L          G+ NN 
Sbjct: 79  LVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEMSAAILGLCGNVLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    DF + ELG +H+GEI +   L RPH A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWK 264
           A AK EIF GL   GT  +N D + +E  +   HAL  + ++ F     A  DF     +
Sbjct: 199 AQAKGEIFAGLPPQGTAIVNADSNDWENWQ---HALTEQRVWRFSPQAGAGVDFYASAVR 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +  +   +       +V+    G H   N L    +   + A +    + L+      
Sbjct: 256 SDAAGTHFTLHTPAGQCDVLLPLPGRHNIANALAAAALTMSVGATLTQVQQGLAGLQAVP 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR    R   +Q    L+D+SYNAN  SM AA  VL     H  G R+ V+GDM E+G  
Sbjct: 316 GRLFPIRLGEHQ---LLLDDSYNANVGSMSAAAEVLG----HMPGYRVMVVGDMAELGAE 368

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           +++ H  + +      I  V
Sbjct: 369 AEACHRRVGQAARAAGIDKV 388


>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 458

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 225/464 (48%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G  ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +    +  
Sbjct: 356 D--GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413

Query: 424 VHYSETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  D    L   +Q+ +   DVV++K+S       +I +L
Sbjct: 414 TERVKAYDNKEELAKELQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
 gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
          Length = 462

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 225/469 (47%), Gaps = 29/469 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    + +    S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHAL 242
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K    
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK---- 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTL 300
               +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +
Sbjct: 242 ----VYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAI 297

Query: 301 G---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKAAI
Sbjct: 298 ACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            V+  I      R IA+LG M E+G      H +++E      I  ++  G    A ++ 
Sbjct: 351 DVMKNIKGK---RTIALLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREG 407

Query: 418 LPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 408 FEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKEL 456


>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Clostridium botulinum F str. 230613]
          Length = 462

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 229/471 (48%), Gaps = 33/471 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V +++  S G +  S  V  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIV-SEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L+   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P
Sbjct: 125 LVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241
            IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K   
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298
                +Y  G  K  DF        +E    ++  QGK+      G+   G H   N L 
Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC-FGVNVPGKHNVLNSLT 295

Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKA
Sbjct: 296 AIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI V+  I      R IA+LG M E+G      H +++E      I  ++  G    A +
Sbjct: 349 AIDVMKNIKGK---RTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYR 405

Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 406 EGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
 gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
          Length = 462

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 228/470 (48%), Gaps = 31/470 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V +++  S G +S    V  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIV-SEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P
Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241
            IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K   
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMT 299
                +Y  G  K  DF        +E    ++  +GK+       +  G H   N L  
Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSLTA 296

Query: 300 LG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKAA
Sbjct: 297 IACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I V+  I      R IA+LG M E+G      H +++E      I  ++  G    A ++
Sbjct: 350 IDVMKNIKGK---RTIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYRE 406

Query: 417 ALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 407 GFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
 gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 209/447 (46%), Gaps = 28/447 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN + ID+R +     F AI+G  +DGHDFI  A + GA   V + ++         P  
Sbjct: 43  VNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESGAAAAVSDREI-----ETDRPYI 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  LA   R      ++ +TGSVGKTTTKEM+   LS+  KT    G+ NN 
Sbjct: 98  LVKDTREALLDLARCYRRAFDGLVVGVTGSVGKTTTKEMIAAVLSAGYKTLKTQGNLNNA 157

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  +    +  + E+GMS LGEI  LT    P I VIT I  +HL      E I
Sbjct: 158 IGLPRTIFELDSTYEAAVIEMGMSALGEISLLTRTALPDIGVITNIGVSHLETLGTRENI 217

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
             AK EI EG+     + +N D+   + ++        + + + G  + +AD++    + 
Sbjct: 218 LKAKLEILEGMAPGAPLVINGDNDLLQTVQLD------RPVLTCGIDNPDADYRAVNIQP 271

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +  ++     ++ V+   IG H   N L    +      +      AL  + P   
Sbjct: 272 RGFDTEFDIVYGENAVHVLLPAIGEHNVLNALFGFAVGRFAGMEDAAIATALGTYTPS-- 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R       G   LI++ YNA+P SM+AA++ L Q+S    GR+IAVLGDM E+G +S
Sbjct: 330 -GMRQNTRTVNGVM-LIEDCYNASPDSMRAALTTLQQLSCA--GRKIAVLGDMLELGPVS 385

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-----LPRSIHVHYSETMDGLFLFIQSS 440
           Q  H +  E+     +  ++   F  L+ + A     +P   HV + +    L   +   
Sbjct: 386 QQAHAEAGELAQKCGVDALFC--FGALSRETAKHGEGIP---HVEWFDDKQSLAQSLSGF 440

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  GD V+ K+S       +I+ + ++
Sbjct: 441 VQPGDAVIFKASRGMKLEEVIHAVFDK 467


>gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 225/511 (44%), Gaps = 64/511 (12%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  D+ +   G  S G  P+  V G +  DSR I     F A+ G + DGHDF   A+ +
Sbjct: 5   TLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQSAIDR 64

Query: 64  GA-GLVVV-------------------NTDMVASIGSLSIPVFGVDDVLGALNKLA--VA 101
           GA G +V                    N+D+ A+      P      V+  + KLA  VA
Sbjct: 65  GAVGALVARDVGVPAVILPPVEQIEGDNSDLAAND-----PDGSARAVVAGMAKLAAHVA 119

Query: 102 ARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             L  K    I  ITGS GKT+TK+++   L+   +T A  GS+NN IG+P T+ R   D
Sbjct: 120 TTLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTED 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            DF + E+    +G I  LTH+  P I V+  +  AHL  F   E IA AK E+ E L  
Sbjct: 180 TDFLVAEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEALPA 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQ 277
            G   LN DD     + +++ A  +   +S     NA++          +  S+      
Sbjct: 240 DGIAILNADDELVAGMASRTKARVV--CFSTDPRSNAEYVAEGITLDDVARASFTMHSPN 297

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  +V     G H   N L T  +      D  T  +ALS  H       R        
Sbjct: 298 SEPQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLS--VNRMDVNTRAD 355

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVL 396
             T+I+++YNANP SM+A I+ L   +    G R IAVLG+M E+GE S   H  L   L
Sbjct: 356 GVTVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVEAHTALGNEL 415

Query: 397 SLYNISHVWLSG-------------------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
           + Y ++H+ + G                      L ++DA  R      SE +  + L  
Sbjct: 416 ARYRVTHLVVVGESAETAALLSRAAERGIESVSALDIEDATER-----VSEILRTVPLGE 470

Query: 438 QS--SLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++     D DVV+VK+SN+ G +R+   LL+
Sbjct: 471 ENWRDRPDRDVVLVKASNAAGLWRVAERLLD 501


>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 458

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 227/464 (48%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 IAETVTFGDARANDYYPTTVALQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G  ++I VLGDM E+G     FH ++ +++    I++V+  G     + +    +  
Sbjct: 356 D--GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFTYGKLGAQIAEGAKINFP 413

Query: 424 VHYSETMDGLFLFIQS--SLVD-GDVVVVKSSNSCGFYRLINLL 464
           +   +  D     ++   ++VD  DVV++K+S       +I +L
Sbjct: 414 IERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEVITML 457


>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/491 (29%), Positives = 226/491 (46%), Gaps = 51/491 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +LL+A  G+ +       V  IS+DSR++   + F  I G   D H F+  A+  GA
Sbjct: 5   TVKELLEATGGNLLHGQEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGA 64

Query: 66  GLVVVNT-----DMVASI------------GSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            +V  +      D+ A +             +L      V D   AL  L    R     
Sbjct: 65  AVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSL 124

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++ ITGSVGKTTT+EM+  ALS+  K Y   G+ N+ +GVP+T+A +P   + G+ ELG
Sbjct: 125 PLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGVIELG 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           MS  GE+  +  + R   AV+T I  AH+      E I   K  I EG+   G +FLN D
Sbjct: 185 MSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILFLNGD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287
           D     +  K    G K +  +G  ++ D++       +E   +E   +G  +    HG 
Sbjct: 245 DPLLASVVPKE---GRKKVL-YGLGRDCDYR-------AEDLHLE---EGYPVFTAVHGD 290

Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G HM  N +  L +       ++ A  AL  F   +GR + +      G 
Sbjct: 291 CRVRVRLKVMGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIF----EWGG 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+ID+SYNA+P SMKA + VL  +   GE R+IAVL DM E+G  ++ FH ++   +  
Sbjct: 347 VTVIDDSYNASPVSMKAGLEVLDSVK--GE-RKIAVLADMKELGPDTERFHAEIGAYIGE 403

Query: 399 YNISHVWLSGFHVLALKDAL--PRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + +  V L G     +   +   R+   H   +++     ++  ++ +GD ++ K SNS 
Sbjct: 404 HPLDMVLLLGELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILFKGSNSM 463

Query: 456 GFYRLINLLLE 466
                +  L E
Sbjct: 464 KLSEAVKHLKE 474


>gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 456

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR IAP + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   V
Sbjct: 27  GVSTDSRGIAPGQLFVALTGPRFDGHEYLEQVAGKGAVGALVEHEVEGA----SLPQLVV 82

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   +      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 83  LDTRKALAQLGAMNRNAFVDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  + D  + ELG S +GEI F   L +PH+A+IT    AH+  F G
Sbjct: 138 LNNELGVPLTLLELAPEHDAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGG 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF--- 258
            + I  AK EI EGL+ TGT  LN DD  F + + ++   G + + +F   +  AD    
Sbjct: 198 PDRIVEAKGEILEGLDATGTAVLNLDDKAFPIWQLRA---GERKVMTFALNNPAADLHAT 254

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            LR+  +      +   L    +++  + +G H   N L        L   ++     L+
Sbjct: 255 DLRRDARGCPAFMLNSPLGAAPVQL--NLLGTHNVANALAAAAAACALGVSLEGIAAGLN 312

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P +GR       +      +ID++YNANPAS+ AA+ +L+  S    GR + VLGD+
Sbjct: 313 NVQPVKGRAV---AQIASNGVRVIDDTYNANPASINAAVDILTGFS----GRTVLVLGDI 365

Query: 379 CEMGELSQSFHIDL-----AEVLSLYNI 401
            E+G+ ++  H ++      +V +LY +
Sbjct: 366 GELGDWAEQGHREVGAYAAGKVSALYAV 393


>gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 185/380 (48%), Gaps = 17/380 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R ++    F A+KG  +D HD+   AV+ GA  ++V+  +      + +P  
Sbjct: 24  IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKRL-----HIDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L    R +S A ++A+TGS GKT+ KEM    L          G++NN 
Sbjct: 79  LVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  F + ELG +H+GEI + T LVRP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264
           A AK EIF GL   G   +N D + F   +     L  KT++ F      N DF      
Sbjct: 199 AQAKGEIFSGLPVDGVAIVNADSNDFPHWQVT---LNHKTVWRFSPQAACNIDFFASDVA 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ +   +       +V+    G H   N L    +   + A ++     LS      
Sbjct: 256 VLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALAMSVGATLEAVKAGLSQLQAVP 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR   +  AL++G   L+D+SYNAN  SM AA  VL+ +     G R+ V+GDM E+G+ 
Sbjct: 316 GR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLADMP----GYRVMVVGDMGELGDD 368

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           +   H  + E   +  I  V
Sbjct: 369 APECHRQVGEAARVAGIDCV 388


>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
 gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
          Length = 473

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 194/391 (49%), Gaps = 39/391 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +SI++R+++  + F AIKG  +DGH F+ +A  +GA  +VV  ++V S     +P + V 
Sbjct: 30  VSINTRTMSVGDLFVAIKGDQFDGHQFVANAQNQGAIALVVEKEIVDS----DLPQWLVG 85

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKTYACIGSYNN 145
           D   AL  +A A R      I+AITGS GKTT K ML     +A+S     +A  G+ NN
Sbjct: 86  DTTLALGHIAEAQRDNFLGKIVAITGSSGKTTVKGMLESILRVAVSD--HVFATKGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPL+L  +     + + E+G S +GEI++LT + +P +A+I  +  AH+  F  I+ 
Sbjct: 144 HIGVPLSLLSLKSQHQYAVIEMGASAVGEIQYLTQMAKPDVAMINNVMSAHVEGFGSIDN 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSF---------------FELLKAKSHALGIKTIYSF 250
           IA  K EI+ GL   G   +N  D +               F      S+A+ + ++ + 
Sbjct: 204 IAKGKGEIYNGLTNAGVAVINIADKYAPQWLEQNSQRQTLLFSASTDVSNAMDMNSVANI 263

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A    +K   C++    ++QL  KS E+    +G H   N L        L   +
Sbjct: 264 ----TATNVKQKHNGCAK---FDLQLLEKSTEINLSVLGMHNVANALAASTCAYALNISI 316

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + LS F    G   R  C       T+ID+SYNANP S  AAI VLS +S     +
Sbjct: 317 EDIAQGLSEF---TGVAGRLHCLEGVNDSTVIDDSYNANPNSFCAAIDVLSDMSA----K 369

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            + V+GDM E+G+ S S H  +    +  NI
Sbjct: 370 TVLVMGDMAELGDDSDSEHEKIGRYANEKNI 400


>gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
 gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
          Length = 418

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 217/436 (49%), Gaps = 35/436 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I     FFA+KG +++G+ F   A++ GA   +V+ ++  +  ++ +    V 
Sbjct: 16  VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEVYQTQDAIIL----VP 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R + KATII +TGS GKTTTKE++   LS   KT A  G+ NNHIGV
Sbjct: 72  NVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  MP+D + GI E+G +H  EI FL+ +  P    IT    AHL  F G+E +   
Sbjct: 132 PLTLLSMPIDTEMGIVEMGANHQKEIEFLSSICEPDFGYITNFGKAHLEGFGGVEGVIKG 191

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  LE+   I F+N DD   ++ K K+    I TI  F  S      L++      
Sbjct: 192 KSELYHFLEQNNKIAFINPDDKI-QVDKTKN----ITTI-PFLPS----IALKEANPF-- 239

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                VQL   ++ +  + IG +   N+ + + I +      D   +A+  +     R +
Sbjct: 240 -----VQLSYDNLVINSNLIGTYNYTNIAIAITIGNYFKVKDDVIKEAIEGYESTNNRSQ 294

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +NQ    +I ++YNANP+SMK A+     +       +I +LGDM E+G+     
Sbjct: 295 ----IINQNSNVIILDAYNANPSSMKVALENFHALKA---DHKIVILGDMFELGDARLEE 347

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +  + +  N +  +  G H    K+      + +  +T D      ++++     ++
Sbjct: 348 HQQIVNMATQMNFNGYYFVGEHFYQTKE------NENLFKTFDDFKNDFENNIPSNSSIL 401

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      R++ LL
Sbjct: 402 IKGSRGMRLERVVELL 417


>gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 577

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/408 (34%), Positives = 189/408 (46%), Gaps = 39/408 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLSIPVFGV 88
           DSR +     F AI G   DGHDF+  A + GA + +V      D   +     I V   
Sbjct: 73  DSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENS 132

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + LG L K  +  R  L +  +II ITGSVGKTTTK+ML   LS++  T A IGS+NN 
Sbjct: 133 VEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNE 192

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT  ++  +  F I E+G +H+GEI  LT +  P +AV+  +  AHL  F  +E I
Sbjct: 193 IGLPLTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERI 252

Query: 207 ASAKAEIFEGLEKTGTIFLNYDD-------SFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           A AK+EI  GL   G   LN DD       S  +  K +       T   F  S N ++Q
Sbjct: 253 AQAKSEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQ 312

Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEV------VHHGI-GYHMAQNMLMTLGIVSILTADVD 311
           L        E    E  L  K+ +       VH  I G H   N +    +      ++D
Sbjct: 313 LSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLD 372

Query: 312 TAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH---- 366
           +  K L  V H    R +  + + N   FTLID+S+NANP SMKA I  L     H    
Sbjct: 373 SIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHD 432

Query: 367 -------------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                            RIAVLG M E+G    + H  + E ++ +NI
Sbjct: 433 LNVNTEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNI 480


>gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus epidermidis FRI909]
          Length = 451

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 209/443 (47%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+SIDSR I     F   KG + DGH FI  A+  GAG V    +   S   +  P+ 
Sbjct: 26  INGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKENRYS-EEIQGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   LS+  K     G+YNN 
Sbjct: 85  WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL  +  D +  I E+GMS   +I  L+++ +P IAVIT I  +H+ +    E I
Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPDIAVITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+        K H   +K         N+D         
Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEPLL-----KPHVTQVKDAKLISIGLNSDNTYTCHMND 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +   +   +  K  E  H  I G H  +N  + + I   L  +       +        
Sbjct: 260 VKNEGIHFTINQK--EHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R+  + N    T+I+++YNA+P SMKAAI  LS +    +GR+I +L D+ E+G  S
Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLV 442
           Q  H  + E L   NI  ++  G     + D+    I V  ++  D     IQ   S + 
Sbjct: 371 QVMHKQVGEYLKDKNIDVLYTFGKEASYIHDS--GKIFVKEAKHFDQKEQLIQTLISQVK 428

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
             D V+VK S       +++ LL
Sbjct: 429 PEDKVLVKGSRGMKLEEVVDALL 451


>gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 466

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 175/363 (48%), Gaps = 16/363 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+RS+ P + F A+KG H+D H+F+  A  +GA   +    +  +     +P   V 
Sbjct: 27  VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQHGLREA----GLPGLEVA 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHI 147
           D   AL +LA   R +    +IA+TGS GKTT  +M+   L + K     A  G+ NN I
Sbjct: 83  DTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILRAWKPDAALATEGNLNNDI 142

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+      G+ ELGM+H GEI +L HL RP +A++      HL   + +E +A
Sbjct: 143 GVPLTLLRLRASHQVGVIELGMNHPGEIAYLAHLARPSVALVNNAQREHLEFMATVEAVA 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
                +   L+  G      DD +  + +  +   G + + +F  +  AD     +W+  
Sbjct: 203 QENGSVLASLDADGIAVFPADDVYTAVWRRLA---GERQVLTFALAAPADVTASARWEGD 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q  +E Q     +E   H  G H  +N L            +      LS F P +GR
Sbjct: 260 GWQ--VEAQTPSGPIEFSLHIAGRHNVKNALAATASALAAGVPLSFIAAGLSAFVPVKGR 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     L     TLID++YNANP SM+AAI VL+++     G R+ V+GDM E+G    
Sbjct: 318 SRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLAELP----GPRLLVMGDMAEVGSQGP 373

Query: 387 SFH 389
            FH
Sbjct: 374 QFH 376


>gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 576

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/408 (34%), Positives = 189/408 (46%), Gaps = 39/408 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLSIPVFGV 88
           DSR +     F AI G   DGHDF+  A + GA + +V      D   +     I V   
Sbjct: 72  DSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENS 131

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + LG L K  +  R  L +  +II ITGSVGKTTTK+ML   LS++  T A IGS+NN 
Sbjct: 132 VEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNE 191

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT  ++  +  F I E+G +H+GEI  LT +  P +AV+  +  AHL  F  +E I
Sbjct: 192 IGLPLTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERI 251

Query: 207 ASAKAEIFEGLEKTGTIFLNYDD-------SFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           A AK+EI  GL   G   LN DD       S  +  K +       T   F  S N ++Q
Sbjct: 252 AQAKSEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQ 311

Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEV------VHHGI-GYHMAQNMLMTLGIVSILTADVD 311
           L        E    E  L  K+ +       VH  I G H   N +    +      ++D
Sbjct: 312 LSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLD 371

Query: 312 TAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH---- 366
           +  K L  V H    R +  + + N   FTLID+S+NANP SMKA I  L     H    
Sbjct: 372 SIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHD 431

Query: 367 -------------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                            RIAVLG M E+G    + H  + E ++ +NI
Sbjct: 432 LNVNTEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNI 479


>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 460

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 222/448 (49%), Gaps = 37/448 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           + G+ IDS+ I     F  I     DGHD++  A++KGA   +       S G     IP
Sbjct: 33  MQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGAAASLWK----KSYGDPPKGIP 87

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL K+A   R  S   +I ITGS GKT  K++++  LS+  + +   G+ N
Sbjct: 88  IIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKDIISTILSTTYRVHKTKGNLN 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IG+PLT+  M  D +F I E+GMS  G+IR L  + +P +A+IT I  +HL      E
Sbjct: 148 SQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSRE 207

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----QL 260
           EIA AK EI +GL   G    N D+    LL    + LGI+     GK  N  F    QL
Sbjct: 208 EIAKAKFEIVDGLNDGGLFLYNGDEP---LLSQNINMLGIEGKSFGGKYTNDLFPTNVQL 264

Query: 261 RKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            ++    K    +   +V L GK           H   N ++ + +       ++   +A
Sbjct: 265 DEYGVHFKLNHSKIQYDVPLHGK-----------HNIFNTIVGIAVGQFYKVPIEKIQEA 313

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L   +  +    R++    +  FT+I++++NA+P+SMKAAI  L +++ +   ++I V+G
Sbjct: 314 LQQINITQ---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KKKIIVIG 368

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ ++++H ++ E+L+  +I +V+  G     + +   ++ H    ++ D     
Sbjct: 369 DMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHTGKIKSFDNKAKI 428

Query: 437 IQSSL---VDGDVVVVKSSNSCGFYRLI 461
            +  L      DVV++K S       ++
Sbjct: 429 AEEVLKVITKKDVVLLKGSRGMALEEIV 456


>gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15]
          Length = 452

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L       G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
 gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
          Length = 465

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 224/448 (50%), Gaps = 28/448 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N +  DSR       F A+KG ++DGH F+  A  +GA  ++V   +V S    ++P 
Sbjct: 23  IINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVE-HLVES----NLPQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL  +A   R +    +I ITGS GKTT KEM+   L       A  G++NN
Sbjct: 78  VIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVASILRQKGNLLATQGNFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL R+     + + E+G +H+GEI +   L +P ++VI  +  AH+  F  +E 
Sbjct: 138 HIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCASLAKPDVSVINNVEAAHIEGFGSVEG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A AK+EI++ L + GT  +N D +F +  +      G++ I +  + K+A+F       
Sbjct: 198 VAKAKSEIYQALSEEGTAVINLDSNFAD--QWIEQFAGLQKI-TVSRHKDANFVA---DN 251

Query: 266 CSEQS------WMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           C  Q        M+    G S  + V   + G H   N L+   + S   AD++     L
Sbjct: 252 CQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSNALVAAALASAAGADMEIIKVGL 311

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 +GR  +++ A   G   +ID++YNA+ AS+KAAI  L+ +S    G ++ VLGD
Sbjct: 312 ETMVSVKGRLNQFKAA--NGAL-IIDDTYNASVASVKAAIDYLTSLS----GTKVLVLGD 364

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G+ S+ +H ++ E     NIS + +SG  V    +A        + E  + L   +
Sbjct: 365 MAELGDESEQYHREVGEYAKENNISQLLVSGHWVKYSTEAFGDK--AQWFENKELLVSHL 422

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S +     ++VK S S    ++++ L+
Sbjct: 423 NSVIQSDYKILVKGSRSAQMEQVVDALV 450


>gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
 gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
          Length = 457

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 216/448 (48%), Gaps = 25/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +S D+R++     F AI G  +D HDF   AV+  A  ++V   +      L+I   
Sbjct: 28  INAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEANASALLVERKL-----DLNITQV 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +L+     +     +AITGS GKTT KEM+   L    K     G++NN 
Sbjct: 83  VVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAGNFNND 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R     D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  I+ +
Sbjct: 143 IGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGV 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQ 265
             AK EIF+GL    T  +N + +  +     +  L  KT+ +F + S+ AD+     + 
Sbjct: 203 KQAKGEIFQGLAAGDTAIVNLESNGGDFW---NEVLADKTVLTFSEGSREADYFAENIEI 259

Query: 266 CSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + ++  ++Q    +  V    IG H   N L    +     A +D     L+     +
Sbjct: 260 NDQGEACFDMQTPQGATAVELGIIGQHNVTNALAAAALSIQFGATLDEIKSGLANLISVK 319

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +  + + N     LID+SYNA+  +MKAA  +LS      +G+R  +LG+M E+G+ 
Sbjct: 320 GRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLSSF----KGQRWLILGNMAELGDE 372

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-- 442
           S + H  + E  + +   HV   G     + +    +   H++ T   +   I+  L   
Sbjct: 373 SLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCNGT---HFA-THQAMIAHIEQHLRLP 428

Query: 443 --DGDVVVVKSSNSCGFYRLINLLLEEF 468
                 ++VK +NS G  ++   L E F
Sbjct: 429 ENASHTLLVKGANSAGMSKIAAALKENF 456


>gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 454

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 222/448 (49%), Gaps = 37/448 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           + G+ IDS+ I     F  I     DGHD++  A++KGA   +       S G     IP
Sbjct: 27  MQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGAAASLWK----KSYGDPPKGIP 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL K+A   R  S   +I ITGS GKT  K++++  LS+  + +   G+ N
Sbjct: 82  IIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKDIISTILSTTYRVHKTKGNLN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IG+PLT+  M  D +F I E+GMS  G+IR L  + +P +A+IT I  +HL      E
Sbjct: 142 SQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSRE 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQL 260
           EIA AK EI +GL   G    N D+    LL    + LGI+     GK  N     + QL
Sbjct: 202 EIAKAKFEIVDGLNDGGLFLYNGDEP---LLSQNINMLGIEGKSFGGKYTNDLFPTNVQL 258

Query: 261 RKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            ++    K    +   +V L GK           H   N ++ + +       ++   +A
Sbjct: 259 DEYGVHFKLNHSKIQYDVPLHGK-----------HNIFNTIVGIAVGQFYKVPIEKIQEA 307

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L   +  +    R++    +  FT+I++++NA+P+SMKAAI  L +++ +   ++I V+G
Sbjct: 308 LQQINITQ---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KKKIIVIG 362

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ ++++H ++ E+L+  +I +V+  G     + +   ++ H    ++ D     
Sbjct: 363 DMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHTGKIKSFDNKAKI 422

Query: 437 IQSSL---VDGDVVVVKSSNSCGFYRLI 461
            +  L      DVV++K S       ++
Sbjct: 423 AEEVLKVITKKDVVLLKGSRGMALEEIV 450


>gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 455

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 218/450 (48%), Gaps = 31/450 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A + GA  +    D+         P  
Sbjct: 26  LNQIEFDSRKITEGDLFLPLKG-ERDGHDFIDLAFENGAVAIFSEKDLPGK------PHL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A   LA     + +  +IA+TGS GKT+TK+M++  LS+  KTY   G+YNN 
Sbjct: 79  LVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+G  H+G+I  L+ + RP IAV+T +  AHL  F   ++I
Sbjct: 139 IGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSRDKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I +   DS  +     S+    + +  FG  +  +    + ++ 
Sbjct: 199 AQGKMQIVDGMDSNG-ILIAPGDSIID-----SYLPENQMVIRFGDHQELNVTDIREEKD 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S      V     S+ +     G + A N ++   +  +L    +  I+AL        R
Sbjct: 253 SLTFTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G  S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDGLFLF 436
           + H  L + LS   I  +   G  +  L     +  P   HV +      ++  + +   
Sbjct: 366 ALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFRKNQQADQFEDMVRQ 424

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 425 VQQLLAPSDQILLKGSNSMGLAKLVNRLVE 454


>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
 gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
          Length = 458

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 202/389 (51%), Gaps = 24/389 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S D+R+I     +  ++G  ++GHDF+  A QKGA  V+             +PV 
Sbjct: 27  VSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGAAAVLWAER--EGTPPEGVPVV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +LA   R +    +I +TGS GKTTTK+M+   LS+  +     G+ NNH
Sbjct: 85  VVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLSTHYRVQKTEGNLNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +    +  + E+GMS  GEI  LT + +P  AVIT I  +HL      E I
Sbjct: 145 IGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAKPDAAVITNIGESHLQELGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWK- 264
           A AK EI  GL   G +F+ + D    LL  +   L + + + +FG  +  D+     + 
Sbjct: 205 AKAKLEILAGLHHDG-LFVYHGDE--PLLTERVPKLPLPRHVVTFGAGEQNDYYPTDVRI 261

Query: 265 QCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSV 319
           +    S++   L G++  M V    +G H   N L  + +      D   +D ++  L V
Sbjct: 262 EAGGTSFVINALPGRTLFMPV----LGKHHVYNALAAIAVARFFGIDWEGIDASLSRLQV 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R      +  FT+I+++YNA+P SM+AA+ +L ++S  G  ++IAVLGDM 
Sbjct: 318 TR------MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQELS--GYRQKIAVLGDML 369

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           E+G+   +FH ++ EVL    + +V+  G
Sbjct: 370 ELGDEEVAFHREIGEVLRPGMVDYVFTYG 398


>gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 155-74]
          Length = 452

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S      +  L E
Sbjct: 426 VITILVKGSRSAAMEEAVRALQE 448


>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
 gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
          Length = 974

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 192/391 (49%), Gaps = 38/391 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R++   + FFA+ G  +D HDF+  A   GA   VV+  +      + +P   V
Sbjct: 541 GVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWV-----DVDLPQIKV 595

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   AL   A   R R    ++A+TGS GKT+ KEML    S   +  A  G+ NN IG
Sbjct: 596 EDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEGRVLATSGNLNNDIG 655

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+     F + ELG +H+GEI +   LVRP  A+IT +  AHL  F     IA 
Sbjct: 656 VPLTLLRLDDSYQFAVIELGANHVGEIAYTVGLVRPDAALITNVGEAHLEGFGSRNNIAK 715

Query: 209 AKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           AK+EI+ GL   G   +N DD +   F  L A  + L     +S   ++           
Sbjct: 716 AKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNASRNVL----TFSIENTR---------AN 762

Query: 266 CSEQSW---------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           C  +SW         +EV + G+ +++  + IG H   N L          A + +    
Sbjct: 763 CFAKSWSLDPVGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAAARAAGASLTSIRDG 822

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+   P +GR   +  +L  G +  ID++YNANP+SM+AAI  L+++       ++ +LG
Sbjct: 823 LNKLQPFKGR--MFPKSL--GRWHWIDDTYNANPSSMRAAIDALARLDEP----KVLILG 874

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            M E+GE S   H D+    +   I  +++S
Sbjct: 875 RMGELGEQSAKLHADIGAYAARAGIRRLFIS 905



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 137/327 (41%), Gaps = 35/327 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83
            V+G+  DSR +   + F A+KG H DG D+I  A+++GA  V+ +   V++   ++   
Sbjct: 24  MVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLADRVGVSAEQVVNAHG 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            V   DD+   L    +A+R   + +    +IA+TG+ GKTT   +L   L  + ++   
Sbjct: 84  NVIWRDDLRSELGD--IASRFYDEPSKQMRVIAVTGTNGKTTVSHLLVRLLMRLGESAKT 141

Query: 140 IGS----YNNHIGVPLT------------LARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182
           IG+    + +H+ +PL             LA    D   F   E     L + R     V
Sbjct: 142 IGTLGYGHPDHL-IPLANTTPDAIQLHEILAACREDGARFVAMEASSHGLDQGRL--GCV 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKSH 240
               AV T I   HL     ++    AKA++  + GL     + LN DD+    + A + 
Sbjct: 199 EISTAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLR---NLVLNADDAGVAKMAAVAE 255

Query: 241 ALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G+K ++ S     N D  L +         ++++++ +        +G     N+L  
Sbjct: 256 H-GVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFNVANILAV 314

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326
           L  +          + AL    P +GR
Sbjct: 315 LAALVSEGFSASLVVDALKEIAPVKGR 341


>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
 gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 209/443 (47%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+SIDSR I     F   KG + DGH FI  A+  GAG V    +   S   +  P+ 
Sbjct: 26  INGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKENRYS-EEIQGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA A        +IA+TGS GKTTTK+M+   LS+  K     G+YNN 
Sbjct: 85  WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL  +  D +  I E+GMS   +I  L+++ +P IA+IT I  +H+ +    E I
Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPDIAIITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    + D+        K H   +K         N+D         
Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEPLL-----KPHVTQVKDAKLISIGLNSDNTYTCHMND 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +   +   +  K  E  H  I G H  +N  + + I   L  +       +        
Sbjct: 260 VKNEGIHFTINQK--EHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R+  + N    T+I+++YNA+P SMKAAI  LS +    +GR+I +L D+ E+G  S
Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLV 442
           Q  H  + E L   NI  ++  G     + D+    I V  ++  D     IQ   S + 
Sbjct: 371 QVMHKQVGEYLKDKNIDVLYTFGKEASYIHDS--GKIFVKEAKHFDQKEQLIQTLISQVK 428

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
             D V+VK S       +++ LL
Sbjct: 429 PEDKVLVKGSRGMKLEEVVDALL 451


>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
 gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
          Length = 455

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 221/476 (46%), Gaps = 39/476 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  + Q   G      PQG V  +  DSRS+   + F A++G  +DGH FI  A ++GA
Sbjct: 5   TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGV---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
              +V  +  A +     P FGV    + L AL +L    R      +I +TGS GKT+T
Sbjct: 65  AGAIVE-EFPAEL----PPGFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++    L    +     G+ NNHIG+PLTL R       G+FE+GM+H GEI  L  + 
Sbjct: 120 KDLTASVLGENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  AH+      E IA  K  + E L  +GT+ L+ +D F   + A++ A 
Sbjct: 180 APEVGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAARTKAD 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    + G+   +D      +  +  +   +  +G++        G HM +N ++ +  
Sbjct: 240 VVLAGINKGEVFASDL-----RPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAISV 359
                  ++     LS     +GR       L Q       +ID++YNANP S+ AA+  
Sbjct: 295 GRAFGLSLEECAAGLSKLRLTKGR-------LEQKMIRGIQVIDDTYNANPDSVAAALRT 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV--------WLSGFHV 411
           L+ +     GRRIAVLG M E+G  ++  H  + EV +  ++  V        W++    
Sbjct: 348 LASMPAV--GRRIAVLGRMGELGVEAERGHRLVGEVAAQTHVDSVIGVGEEAQWIT---E 402

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            A +  + + + V  +E    +   +  +   GD+V++K S S    R++  LL +
Sbjct: 403 AAWRGGVEKVVRVESTEEATKVLRDLAKA---GDLVLIKGSRSARMERIVEGLLAQ 455


>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
 gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
          Length = 453

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 217/466 (46%), Gaps = 26/466 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L+  + GH  G  P   V G ++DSR I   E F A+ G   DGHD++  A   GA
Sbjct: 5   SLSRLVADLGGHLRG--PDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSAARTAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
              ++   +        +P + V D  G L  L    R    AT I+A+TGS GKTT KE
Sbjct: 63  AAALLERAV-----PEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGKTTVKE 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L+    T A  G+YNN +GVPLTL R+     + + ELG S  G+IR LT  VRP
Sbjct: 118 MLAAILARHGATLATSGNYNNELGVPLTLCRLQRRHRYAVLELGASAPGQIRRLTQWVRP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT   PAHL  F  +  +A  K E+FE L   G   +N DD+F  L +  +     
Sbjct: 178 SVGVITNAGPAHLDGFGSVAGVARGKGELFETLPDDGIAVINVDDAFANLWQRLARP--- 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +   +FG  + A+ +       +    +E++  G+ + V    +G H  Q   +     +
Sbjct: 235 RRCITFGLDRRAEVR----ATTAADGQLELRWDGRVLPVRLPLLGRHN-QLNALASAATA 289

Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +       AI+A L    P  GR   +R  +  G   ++D++YNANPAS+ AAI VL++ 
Sbjct: 290 LALELPGAAIRAGLEAMRPVPGR-LCWREGI--GGARILDDTYNANPASLAAAIRVLAEN 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     RR  VLGDM E+GE +   H    ++     +  +++ G   LA   A    + 
Sbjct: 347 SQ----RRWLVLGDMAELGETAGRLHRRAGQLARAGGVERLFVIGE--LAAASAAGFGLG 400

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               +  + L   +   L     V++K S S     + + L  + P
Sbjct: 401 AECFDDREALVKALSGGLGPDIAVLIKGSRSAAMDIVADRLAADKP 446


>gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401]
 gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 4343-70]
 gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-218]
 gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-272]
 gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-227]
          Length = 452

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S      +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 453

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 187/380 (49%), Gaps = 17/380 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R ++    F A+KG  +D HD+   AV+ GA  ++V+  ++     +  P  
Sbjct: 24  IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKRLL-----VDEPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R +S A ++A+TGS GKT+ KEM    L          G++NN 
Sbjct: 79  LVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  F + ELG +H+GEI + T LVRP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264
           A AK EIF GL   G   +N D + F   +     L  KT++ F      + DF      
Sbjct: 199 AQAKGEIFSGLPVDGVAIVNADSNDFPHWQVM---LNHKTVWRFSPQAACDIDFFASDVD 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ +   +       +V+    G H   N L    +   + A ++     LS      
Sbjct: 256 VLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALAMSVGATLEAVKSGLSQLQAVP 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR   +  AL++G   L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+ 
Sbjct: 316 GR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGDE 368

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           +   H  + E   +  I  V
Sbjct: 369 APECHRQVGEAARVAGIDRV 388


>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 452

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 196/393 (49%), Gaps = 17/393 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  + IDSR++   + FF I G   DGH+F   AV+ GA  VV +  +      L +PV 
Sbjct: 24  VGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGACAVVASAPL-----DLDVPVL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA A R +++A +I ++GS GKTT KEML   LS+  +T     + NN 
Sbjct: 79  LVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTVKEMLAQVLSAAGRTAKNFRNLNNQ 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PL++  M  D DF + ELG+S  G++  L +++ P  A++  I   HL     +  +
Sbjct: 139 IGLPLSILEMDGDEDFWVLELGISRPGDMDELGYILAPDAALLVNIGACHLEGLGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  KA + + + K G   +N D  + EL++ +S     K +   G    AD+   + +  
Sbjct: 199 AEQKAVLLDHVRKGGFACVNAD--YPELMQ-ESTKRSPKLVTFSGTGARADYSCLRQENV 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +       ++  + +       G H+A+N+   + +   L     T   ALS + P   R
Sbjct: 256 AGAISYTFRVGHEELRCTVSA-GIHVAENLAAVVAMAMELGMTFATIESALSAYSPVAQR 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGELS 385
             + R     G +  ID++YNANP SM  +I    ++   GEG+R+  VLGDM E+G  S
Sbjct: 315 FVQTRV----GTWLFIDDTYNANPVSMARSIGEAKRL---GEGKRLVLVLGDMLELGRDS 367

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              H +L  +++    SH +  G +   +KD L
Sbjct: 368 VRAHRELGGLIADTGASHCFFQGRYAEDVKDGL 400


>gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 459

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 208/432 (48%), Gaps = 22/432 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+S DSR+I     +  + G  +DG  F+     KGA   +++ D      ++SIP  
Sbjct: 27  ISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKGASAFLIDRDYEIK-NNISIPYI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL  LA + R      +I ITGS GKTTTK++L   LS+  KT   IG+ NN 
Sbjct: 86  RVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKDLLYEVLSTKYKTQKTIGNLNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP T+  +  D +  + ELG    G+I   +++  P IA+IT I  +HL N    E I
Sbjct: 146 IGVPKTILSLNEDTEIAVVELGTDKFGDISLTSNIALPDIAIITNIGDSHLHNLKSKEGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQ 265
             AK EI EGL   G    N DD   E +K +  +  + + I SFG   + DF +++   
Sbjct: 206 LKAKMEIVEGLSDDGIFIYNGDD---ETMKKEIDSYKVDQKIISFGLEDDNDFVVKEIP- 261

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  + +     G++ ++    +G H   N    L I +IL  D +     L    P   
Sbjct: 262 -STPAKVSFSHDGETYDIPL--LGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANN 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R       +    F ++D+SY +NP S+++ ++    +   G   +I VLGDM E+G+  
Sbjct: 319 RS----SMIELDGFDVLDDSYKSNPQSLRSGLATCKLLD--GYNNKIVVLGDMLELGDKE 372

Query: 386 QSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDALPRSIHVHYSETMDGLFLFIQSS 440
              H ++   +   +I +    G   +H+   AL +  P+    H+++  D L   ++S 
Sbjct: 373 DELHYEVGLDIDPKDIHYCLFFGDLSYHMYKGALNN-FPKDRAFHFTDK-DDLIDKLKSF 430

Query: 441 LVDGDVVVVKSS 452
           +    +V VK S
Sbjct: 431 ITKSTLVFVKGS 442


>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
 gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
          Length = 453

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 219/455 (48%), Gaps = 42/455 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR+I     F   KG + DGH F+  A++ GAG      D V+    +  P+ 
Sbjct: 26  IQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKD-VSLPKDIEGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD L AL  LA A        +IA+TGS GKTTTK+M+   L++   +KKT    G+Y
Sbjct: 85  WVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIECVLNTEFNVKKTQ---GNY 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+  +  + D  I E+GMS   EI  L+ +  P IAVIT I  +H+ +    
Sbjct: 142 NNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADF 258
           E IA AK+EI  GL+  GT   + D+        ++ +AK  ++G++   S   S N   
Sbjct: 202 EGIAQAKSEITIGLKSNGTFIYDGDEPLLKPHVEQIKEAKCISIGLEQGNSLVCSVND-- 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDT 312
                         +V+ +G +  + H        +G H  +N  + + +   L     T
Sbjct: 260 --------------QVETEGIAFTINHQQEYELPILGIHNMKNAAIAIAVGQELGLSYKT 305

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +        R +R+     +   T+I+++YNA+P SMKAAI  LS ++    GR+I
Sbjct: 306 IQHNIKRVKLTGMRMERHET---EQQVTVINDAYNASPTSMKAAIDTLSNMN----GRKI 358

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMD 431
            VLGD+ E+G+ SQ  H ++   L   +I  +   G     + +     +   H+    +
Sbjct: 359 IVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLITFGSEATFIHNTGKSYVDEAHHFNDKE 418

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L  ++   +   D V++K S       +++ L++
Sbjct: 419 KLISYMTHIVQPDDNVLIKGSRGMKLEEVVDALIK 453


>gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 469

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 152/485 (31%), Positives = 230/485 (47%), Gaps = 44/485 (9%)

Query: 6   TFHDLLQAIQGHSI---GIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  ++ +A+ G  +       Q  V+G+   DSR IA    F A  G   DGH F   AV
Sbjct: 5   TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLFAPAAV 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSV 117
           + GA L++V  ++      L +P   V DV+ AL +LA  V AR+R+     ++A+TGS 
Sbjct: 65  EAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGDLRMVAVTGSN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK +L   LS+  +T + + S+NN +G PLT+ ++     F + E+G S LGEI  
Sbjct: 120 GKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVTRTTRFLVAEMGASGLGEITR 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P + ++ T+  AH   F GIE     K E+ + L    T  LN DD     +  
Sbjct: 180 LIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRVSSMSD 239

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNM 296
           K+ A     +  FG+   A  +       +  +   + L  G    V    +G H   N 
Sbjct: 240 KTEA----PVLWFGRDARAAVRATDIVASAAGTTFTLHLPDGSERPVSFRVLGEHHVTNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKA 355
           L        L  D D  + AL        R +R+R   L     T+I+++YNA+P SM A
Sbjct: 296 LAAAAGAWALGVDGDAIVSALQTVQ----RAERWRMEVLGGNGVTIINDAYNASPDSMAA 351

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  L+QI    E R +AVLG+M E+GE S+  H  +  +    NI  + + G       
Sbjct: 352 ALRTLAQIRGP-EQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPA---- 406

Query: 416 DALPRSIHVH--YSETMDGLFLFIQSS----------LVDGDVVVVKSSNSCGFYRLINL 463
               R +H+      + DG  +F + +          L DGD+V+VKSSNS G   L + 
Sbjct: 407 ----RRLHLEAIAQGSWDGESIFAEDAAEAREILDRILRDGDLVLVKSSNSAGLRFLGDE 462

Query: 464 LLEEF 468
           L E++
Sbjct: 463 LGEKY 467


>gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia fergusonii ECD227]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 219/445 (49%), Gaps = 25/445 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           ++ H+ + E      I  V   G   HV++        +  H+++    L   ++S + +
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHVISTTSG----VGEHFADKT-ALITHLKSLIAE 423

Query: 444 GDV--VVVKSSNSCGFYRLINLLLE 466
             V  ++VK S S     ++  L E
Sbjct: 424 QQVITILVKGSRSAAMEEVVRALQE 448


>gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 536]
 gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia
           coli 536]
 gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 60-1]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H  + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
 gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
          Length = 455

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 202/434 (46%), Gaps = 17/434 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  ++ DSR I     F  ++G   DGH+FI  A+  GA   +             I
Sbjct: 21  QTVITSVAFDSRKITDGGLFVPLEG-ERDGHEFIASAINNGASATLWKKGHPNK--PEDI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L A+ +LA     +   T++ ITGS GKTTTK+M+   LS     +    ++
Sbjct: 78  AVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   
Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSR 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI + L + G    N D+    LL+ ++  L  +   +FG           +
Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAEKLD-QAKATFGFRDEDTVHATGF 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     +   V    +   +    IG H   N +  + +        +    +LS F P 
Sbjct: 254 KSYMHHATFTVNDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPT 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +    +   + I   YN+NP +++A ++   Q+     GRRIAVLGDM E+G+
Sbjct: 312 ANRMEWEKGDAGESIMSDI---YNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGK 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438
            S   H  LA+ +    I+ V+L G  +  L DAL     P  +H +  E  D +   ++
Sbjct: 369 KSPELHAGLADTMDPQIINEVYLYGSEMKNLYDALQGKYEPEHLHYYTQEQTDRMIDDLK 428

Query: 439 SSLVDGDVVVVKSS 452
           + +   D+VV+K S
Sbjct: 429 NDIKSDDIVVLKGS 442


>gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 448

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/466 (30%), Positives = 221/466 (47%), Gaps = 27/466 (5%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +T  ++ Q   G  + G  P+  ++G+  D+R+      F A++GP +DGHDF+  A + 
Sbjct: 4   YTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAARKA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V      S G    P   V D L AL  LA A R     ++ A+TGS GKTT K
Sbjct: 64  GAAAVLVQR---PSPG----PGVLVADPLAALQVLAAAWRRELGTSLAAVTGSCGKTTVK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L       A  G+ NNHIGVPLTLA +  +    + E+GM+H GEI  LT + R
Sbjct: 117 EILAAMLRQSGPCLATRGNLNNHIGVPLTLAELGPEHRHAVVEMGMNHAGEIAVLTRMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I    PAH+ N   I  IA+AK EI EGL   G   +N DD + +    ++    
Sbjct: 177 PDLALINNAGPAHIENLGSIAAIAAAKGEILEGLSAHGIAVINGDDEYADYWAERAPG-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++ F           +W+   +   ++++    ++ +     G H   N+L      
Sbjct: 235 --EVWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVSLRIPLSGRHNGANVLAATTAA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D   +A+    P  G   R +    +G   ++D++YNANPAS++AA+ VL++ 
Sbjct: 293 LALNLGLDQIARAVEALTPAPG---RLQWREGKGGSRILDDTYNANPASVEAALRVLAEQ 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                GRR  VLGDM E+G  ++  H  +        I  V    F + +L     R+  
Sbjct: 350 P----GRRYLVLGDMAELGADAELHHQQMGGHARALGIDGV----FTLGSLSRTTSRAFG 401

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               H+ E  + L   + S L    VV+VK S +    R++  L E
Sbjct: 402 PAGTHFVER-EALVDAVLSMLAPDAVVLVKGSRAAHMERVVAALTE 446


>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 455

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 212/445 (47%), Gaps = 26/445 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR       F AI G H DGH FI     +GA  V+       + G    P  
Sbjct: 28  VADIVTDSRRAKEGSLFAAICGEHVDGHRFIPQVYAQGALCVLCEKAPAEAQG----PYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+  L AL  +A   R +    ++ ITGSVGKT+TKEM+   LS   +     G++NN 
Sbjct: 84  LVESTLKALMAIAEFYRQQLDIKVVGITGSVGKTSTKEMIASVLSEKYRVLKTPGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLT+ ++  + +  + E+G++H GE+  L+ + RP + VIT I   HL      + +
Sbjct: 144 LGLPLTVFQLTEEDEVAVLEMGINHFGEMHRLSKIARPDVCVITNIGTCHLEFLGDRDGV 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHALGIKTIYSFGKSKNADFQLRK 262
             AK+EIF+ +   G I LN DD     LK          GI+   +   +   +  L+ 
Sbjct: 204 LRAKSEIFDFIAPDGQIVLNGDDDKLSALKEVRGITPQFFGIEHACAIRATDIENAGLKG 263

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K C      E      S  V     GYHM  N L    +   L   ++   + +     
Sbjct: 264 VK-CRIHDGTE------SFAVTIPIPGYHMVLNALAATAVGRALGMSLEEIRRGIEKL-- 314

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +  G R+R  L  G  T++D+ YNANP SMKA++ VL+  +P   GR+IAVLGDM E+G
Sbjct: 315 -QALGGRFR-ILEAGGITVVDDCYNANPMSMKASLGVLAD-AP---GRKIAVLGDMGELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQS 439
           E  Q  H ++    +  +I   +  G     + + + R      V  +++++ +   +  
Sbjct: 369 ENEQQLHGEVGRFAAGLDIPVFFCVGALCRYMAEEIRRLSPEKQVITADSVEEVLRLLPD 428

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
           S+  GD V+VK+S++  F +++  L
Sbjct: 429 SVQKGDTVLVKASHAMHFEKIVEAL 453


>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
          Length = 453

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 214/459 (46%), Gaps = 48/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +    GI+ D+R++   E F A++G ++DGH F+  A++ GA   VV+    +    L +
Sbjct: 24  RAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIAAVVDRSWESE--GLDL 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+D L A   +A   R +    +IA+TGSVGKTTTKE++   L++         +Y
Sbjct: 82  PLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKELIAAVLTTKGNVLKTQLNY 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP TL  +     + + E+GM   GEI FLT + RP IAVIT +  AH+      
Sbjct: 142 NNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPTIAVITNVGTAHIGRLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK E+   +       LN D+           AL + T     + +   + L K 
Sbjct: 202 EAIAQAKCELLAEMPNDSIAILNSDN-----------ALLMATAAKVWQGETLAYGLEKG 250

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             C E     +  +  S++ ++  +   G H A N L  L +  +L    +     LSV 
Sbjct: 251 NLCPEL----IDDRTISIDSINLPLPLPGRHNAVNYLAALAVAKVLGVSWEPLKGGLSVD 306

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P  GR KRY  A +     ++DE+YNA   SM AA+ +L+        R IAVLG M E
Sbjct: 307 LPS-GRAKRYELAND---IVILDETYNAGLESMIAALKLLADTPGK---RHIAVLGTMKE 359

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHVHY 426
           +GE S  FH  + E     N+  +++              +G   + L D       V  
Sbjct: 360 LGERSLEFHRQVGEKARELNLDALFILADFEEASAIATGAAGLPFVELGDI----TQVDA 415

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            E M      +Q  +  GD ++ K+S+S    R++ LL+
Sbjct: 416 REMMAK---RLQEFVKAGDRILFKASHSVELNRVVQLLV 451


>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
 gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
          Length = 455

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 219/467 (46%), Gaps = 47/467 (10%)

Query: 19  IGIVPQGFV--------NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           +G+ PQ  V         G++ D+R++   E F A+ G  +DGH+F   AV+KGA   +V
Sbjct: 15  LGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQAVEKGAIATIV 74

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              + +   ++++P   V D L A   L    R +    ++AITGSVGKTTTKE++  AL
Sbjct: 75  KKGVFSK--TVTLPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTTKELVAAAL 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S     +    +YNN IGVP TL  +  + D+ + E+GM  L EI  LT + +P +A+IT
Sbjct: 133 SQFGTVFKTRANYNNEIGVPKTLLGLTTEHDYAVVEMGMRGLEEIALLTQIAKPTVALIT 192

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH+        IA AK E+   L   GT  LN+DD+             + T   F
Sbjct: 193 NVGTAHIGRLGSRAAIAQAKCELLRELPTDGTAVLNHDDARL-----------MSTAARF 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIV 303
                  + L            +V+ Q    +++  G+       G H A N+L  +  +
Sbjct: 242 WSGTQITYGLEGG---------DVRGQIAGSDIIVDGVKIPLPLPGRHNALNLLSAIATL 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +     +  SV  P  GR +R++   +     L+DE+YNA     +A I+ L  +
Sbjct: 293 KALNLNWQQLSQGFSVPMPA-GRSQRHQLPND---ILLLDETYNAG---AEATIAALELL 345

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRS 421
           +     R IAVLG M E+G  S   H  + + ++   +  + +        A+ D+  RS
Sbjct: 346 ADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLILADPIEAKAMADS-ARS 404

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +     +  D L   +++ L  GD ++ K+S S    ++++ LL++F
Sbjct: 405 VPSQQFDNHDQLAQCLKAQLQAGDRLLFKASRSVEMDKVVDQLLKDF 451


>gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T]
 gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2002017]
 gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2747-71]
 gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-671]
 gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2930-71]
 gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-304]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPALVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S      +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 463

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 227/470 (48%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WT   ++ A++G  +   P   V+ IS D+RS+   + F A+ G  +DGHDFI  AV+KG
Sbjct: 3   WTVAQIVDAVRGRLMAGDPALPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKG 62

Query: 65  AGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VVV +     ++ + S+ V  VDD L AL +LA   R R    +  ITGS GKT+TK
Sbjct: 63  AAVVVVASGRGEGAVRAGSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L          G+ NN IGVPLTL  M    +  + E+G++  GE+  L  +  
Sbjct: 123 ELLAAILEHRHGILKNRGNLNNQIGVPLTLLTMDPTHEAAVIEMGINVPGEMARLVEIAG 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT I PAHL     ++ I   K  +++ L+  G   +N DD   + L+A S  L 
Sbjct: 183 PTLGLITNIQPAHLEGLGSLDGILKEKGRLWDALDAEGIAVVNLDD---QRLRAYSKRLA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +T+    +   A  ++    +  E S    + L  +++ VV   +G H  +N L     
Sbjct: 240 ARTVTCSVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAA 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +    +     L+ + P    G+R +    +    LID++YNANP SM AA+     
Sbjct: 300 AWAMGEPGEAISAGLAAYRPV---GQRMQIRHMEDGRVLIDDTYNANPESMLAAVRAALA 356

Query: 363 ISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK------ 415
           +     G+  IAVLG+M E+G  S + H +L   +    +S +   G   LA +      
Sbjct: 357 VC---RGKPCIAVLGEMRELGADSAALHRELGRRIGAMGLSGLITLGE--LAARIGEGAV 411

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +A  +     ++++ D +  +++   +D   ++VK S      R++  +L
Sbjct: 412 EAGMKPAACRHAKSHDQVVEWLRERKIDASWILVKGSRGMTMERVVEGML 461


>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
 gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
          Length = 468

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 216/456 (47%), Gaps = 19/456 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +++QA  G  IG   +  V+G+S DSRS+   + F A+KG  +DGH+FI  A+ K
Sbjct: 1   MLSIDEIIQATGGTLIGSGGK-MVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAK 59

Query: 64  GAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V  D + A   + +     V + L AL  LA   R +    +I ITGS GKTTT
Sbjct: 60  GVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L          G+ NN IG+PL L RM     + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT    AHL++   +E +A AK E+F+ L+  G    N DD     L     A 
Sbjct: 180 EPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDPLISRLPT---AA 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G+  + SFG  + A+      K    E     ++L    + V     G H   N L    
Sbjct: 237 GVSRL-SFGL-RGAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNIYNALAAAA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +  D  T    L  F P +   KR+      G   LID+SYNANPAS+ AA+  L 
Sbjct: 295 AAHAIGLDHQTIRAGLEEFTPYD---KRFHVE-QVGDIVLIDDSYNANPASIAAALVTLK 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DA 417
            I    + R IAVLGDM E+G  + + H ++  +L+   +  +++ G +   +     D 
Sbjct: 351 DIRQ--QNRAIAVLGDMLELGSGAPAAHREVG-LLAATCVERLYVMGEYAETVAAGAVDG 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              + H++ + +   +   ++  +  GD ++VK S 
Sbjct: 408 GMGADHIYVAGSHGEIVEDLRRKVTKGDNILVKGSR 443


>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Lactobacillus crispatus ST1]
 gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus ST1]
          Length = 455

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 201/434 (46%), Gaps = 17/434 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  ++ DSR I     F  ++G   DGH+FI  A+  GA   +             I
Sbjct: 21  QTVITSVAFDSRKITDGGLFVPLEG-ERDGHEFIASAINNGASATLWKKGHPNK--PEDI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L A+ +LA     +   T++ ITGS GKTTTK+M+   LS     +    ++
Sbjct: 78  AVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   
Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSR 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI + L + G    N D+    LL+ ++  L  +   +FG           +
Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAEKLD-QAKATFGFRDEDTVHATGF 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     +   V    +   +    IG H   N +  + +        +    +LS F P 
Sbjct: 254 KSYMHHATFTVNDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPT 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +    +   + I   YN+NP +++A ++   Q+     GRRIAVLGDM E+G+
Sbjct: 312 ANRMEWEKGDAGESIMSDI---YNSNPTAVRAVLTSFGQVEVKDNGRRIAVLGDMLELGK 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438
            S   H  L + L    I+ V+L G  +  L DAL     P  +H +  E  D +   ++
Sbjct: 369 NSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHLHYYTQEQTDRMIDDLK 428

Query: 439 SSLVDGDVVVVKSS 452
           + +   D+VV+K S
Sbjct: 429 NDIKSDDIVVLKGS 442


>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 469

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 227/471 (48%), Gaps = 28/471 (5%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +++QA QG    +V QG   G    I IDSR   P   F AI G   DGH F+  A Q+
Sbjct: 7   EEVVQATQGQ---LVCQGMDGGEITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQE 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    +V+ +   +       +  VD+    L  +A   R       + ITGSVGKTTT+
Sbjct: 64  GCRFFLVSNESYITDRFKDSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTR 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L+S   T     +YNN  GVPLTL R+       + E+GMS  GEI +L ++VR
Sbjct: 124 DMVYSVLASKFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEIEYLANIVR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHA 241
           P I +IT I  +H+ +    E I  AK EI  G ++T ++ +N DDS+   EL + ++  
Sbjct: 184 PKIGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERYRNSQ 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                +YSFG     D   +  +    +++      + ++ E     +G H  +N +  +
Sbjct: 244 KDSYKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAAI 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I    ++   K L  F   E R    +  +    FTLI++ YNA+P SM AA+ VL
Sbjct: 304 LAGHITGMTMEEISKGLLDFVATENR----QDIIKTDRFTLINDVYNASPDSMIAALKVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLA 413
                + + RR+A+LGD  EMG+ ++  H       ID A+++     +  ++    V A
Sbjct: 360 ---KLYKDRRRVAILGDCLEMGQYAEEGHRRVGYQSIDKADIIITAGHAAKFIG---VEA 413

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++     S   H+ ET + L   +   + DGDV+++K+S    F  ++ +L
Sbjct: 414 MERGFDLSRVFHF-ETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVL 463


>gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 480

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 230/467 (49%), Gaps = 27/467 (5%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            ++    + F   +SIDSR +   + F A+     DGH F+  A + GA   ++     A
Sbjct: 22  RTVAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDAAKAGAAFAIIERHFEA 81

Query: 77  SIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              SL  S+P   V D + AL  LA + R      ++ ITGSVGKT+T+ ML   L +  
Sbjct: 82  EFASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVGKTSTRSMLYEVLQARY 141

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                  ++NN +G+PL++  +    D F + E+G    G+I  L  + +P + VIT+I 
Sbjct: 142 SGRQSPANFNNTLGLPLSILELECTRDEFAVLEMGAGQRGDIARLCEIAQPEMGVITSIG 201

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL+ F     +A +KAE+FE L + G  F    D F  +LK K+H    +T+ + G+ 
Sbjct: 202 LAHLATFGTPLSVAESKAELFESLPENGVAFFPGHDPFALVLKDKAHC---RTV-TVGED 257

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADV 310
              D+ +++ +   +     +  Q   +  V      H  QN  + + +   V I  A++
Sbjct: 258 TVNDWTIQQVRAVRDGYRFVMDGQDYFIRTV----ARHFVQNAGLAIAVGREVGISNAEI 313

Query: 311 DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 L+ + P  G     RC+L      T++D+ YNA+P++M AA+  L ++    E 
Sbjct: 314 ---ADQLAKWQPVSG-----RCSLIPHPSLTILDDCYNASPSAMAAALRTLEELGEREET 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHY-- 426
           R IAVLGDM E+GE+S+  H  + ++    +I  +   G H  L  K A   ++ +H   
Sbjct: 366 RTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFILAVGQHADLIAKAAKATNLSLHRLA 425

Query: 427 -SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +  ++  ++ ++  + +GDV++VK S S G  R++  L    PA++
Sbjct: 426 VARDVEMAWMLLECWIEEGDVILVKGSRSMGLERIVENLRSFQPAVR 472


>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
 gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
          Length = 445

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/478 (28%), Positives = 227/478 (47%), Gaps = 62/478 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + ++G  +G  P   V   SIDSR+I   E F  +KG  +D H+FI  A +KGA
Sbjct: 4   TSQTLAKILKGSLVG-SPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+   ++    G   I V      L +L ++A   R   K  +I + GS GKTTTKE+
Sbjct: 63  VGVISEREVDVPPGKFLIKV---RSTLESLREIAKFKRENFKGKVIGVAGSAGKTTTKEL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  LS   K Y   G+ N+ +G+PL +A   ++ DF + E G S  GEI+ L  + +PH
Sbjct: 120 LSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKNLIEITKPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +ITT+   HL  F  +E +    AE          +F    D+F+ ++          
Sbjct: 180 VRLITTLGEEHLEGFGSLEGVIWGNAE----------MFCRISDNFYAVIP--------- 220

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH-------------- 291
                GK  +  F L K     E+     +LQ +++EV   G+ +               
Sbjct: 221 -----GKFLDTLFFLPKKISFGERG----ELQAQNVEVSEKGVSFEVEGEKFFISVPSLG 271

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           + +N+L    ++ +L   +    +AL  F P EGR K +    N   F LID++YNANP 
Sbjct: 272 LVENILACFCVLKVLGFTLKEFKEALKEFSPVEGRMKVF----NLKNFILIDDTYNANPV 327

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S++ AI  +          ++ +LGDM E+GE S+  H ++  +L+   +  + L+ F+ 
Sbjct: 328 SLRNAIKSVGAFKRD----KVFILGDMLELGEHSKELHEEVGRLLN--TVKGIRLAIFYG 381

Query: 412 LALK---DALPRSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLL 464
             +K   D+  +S    Y++T + +  FI+ +L   +G  V++K S       +++ L
Sbjct: 382 DEMKYAYDSFNKS-KKFYAKTKEEMLQFIEENLKEFEGCAVLIKGSRGMKLEEVVDFL 438


>gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
 gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
          Length = 454

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 23/449 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +S D+R+I     F A+ G  +D H+F   AV  GAG ++V   +      +++P 
Sbjct: 23  LIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRL-----DVNVPQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL + A       K   +AITGS GKTT KEM+   L    K     G++NN
Sbjct: 78  IVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ 
Sbjct: 138 DIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK- 262
           +  AK EI++GL   G   +N D +     +AK    L  K + +F +S  +ADF     
Sbjct: 198 VKQAKGEIYQGLSAGGIAIVNLDSNG----EAKWDEVLADKKVITFSQSNTDADFFASNI 253

Query: 263 -WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 E S+ + +    + +E+    IG H   N +    I   + A ++     L   
Sbjct: 254 VLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASIIALQMGATLEEVRAGLK-- 311

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G+    AL++    LID+SYNA+  +MKAA+ +L+       G+R  +LG+M E
Sbjct: 312 HLNKVKGRVEVEALSEK-IKLIDDSYNASVPAMKAAVDLLAAFP----GQRWLILGNMAE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439
           +GE S + H  + E  +     HV   G     + D L + IH   + E ++ +   +  
Sbjct: 367 LGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISD-LCQGIHFETHQEMIEYIKQHLDQ 425

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++ +   ++VK +N    + +   L E +
Sbjct: 426 AVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus torques L2-14]
          Length = 461

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 217/449 (48%), Gaps = 24/449 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++IDSR +     F AIKG   DGH FI   ++ GA   +   D+    G +  P  
Sbjct: 28  VSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVMEAGALCSLSEQDL----GDVDYPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  LA   R      ++ ITGSVGKT+TKEM+   LS         G++NN 
Sbjct: 84  RVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTSTKEMIASVLSEKYNVLKTEGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G+SH G+++ L  + RP + VIT I  AHL N    + I
Sbjct: 144 IGLPLTVFNIREEHEVAVLEMGISHFGDMKPLAKIARPDVCVITNIGYAHLENLGTRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K+ + + +   G++  N DD   + LK+ +   G   +Y FG + +  F +   ++ 
Sbjct: 204 LKEKSSMTDYMNPKGSVIFNGDD---DKLKSYTSRDGRTPVY-FGLTSSCPFHVENIERK 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +      +   S    H  I G HM  N L  + +   L  D +   + +    P  G
Sbjct: 260 GLKGTYAEFVTPTSRFHAHISIPGDHMIYNALAGVAVGYALGMDNEEIARGIEKLVPIAG 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R       +    +T+ID+ YNANPASMK+++ VL+    + + R++A+LGDM E+G   
Sbjct: 320 RNN----LIEAKHYTIIDDCYNANPASMKSSLDVLA----YADTRKVAILGDMGELGADE 371

Query: 386 QSFHIDLAEVLSLYNISHV----WLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQ 438
            + H ++    +  N   +     LS     A K+   A  +++ V + +T +  +  ++
Sbjct: 372 LAMHREVGAYAAFKNTDVLVCIGALSKDMAEAAKETVLATEKNMKVFHFDTKEDFYQNMR 431

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             L D D +++K+S+   F  ++  L EE
Sbjct: 432 QILKDNDTILIKASHFMEFPEIVKKLSEE 460


>gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           boydii ATCC 9905]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G     +  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHTISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
 gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli AA86]
 gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 216/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANNDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L       G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
 gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 212/439 (48%), Gaps = 25/439 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N I+ D+R+I   + F A+KG  +DGH F   A+ KGA  +++N  +  +  +  IP 
Sbjct: 25  LINEINTDTRNITENDIFLALKGDKFDGHLFAEKAIDKGAIALILNHKISVN-STKKIPQ 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L A  ++A   R + K  II ITGSVGKTTTKE+++  L    K +    +YNN
Sbjct: 84  IIVKDTLIAYQEIANWWRNKVKIPIIGITGSVGKTTTKELISAVLGVYGKVHKTQANYNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP TL  +    D+ + E+ M   GEI  L+ +  P I +IT +  AH+      E 
Sbjct: 144 EIGVPKTLLAITTSDDYAVIEMAMRARGEIALLSQIACPTIGIITNVGTAHIGRLGSREA 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK E+   +       LN+DD    L++  +     KTI ++G  +  D   +    
Sbjct: 204 IAEAKCELLAEMPTDSIAILNHDDQ--RLMETAAKVWQGKTI-TYG-LEGGDITGK---- 255

Query: 266 CSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                 +E Q L+ K M+      G H A N L  L +   L  D    I+ ++V  P +
Sbjct: 256 -----VLENQILRVKGMDFPLPLPGRHNALNYLAALAVTQQLNLDWHPLIQGVTVNLP-Q 309

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR ++Y     +    L+DE+YNA   SMKAA+ +L         R +AVLG M E+G+ 
Sbjct: 310 GRSQQYSL---ENDIILLDETYNAGLESMKAALQLLKDTPGK---RHLAVLGTMKELGDA 363

Query: 385 SQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           S   H ++ E      I   ++ +      A+   + +++      T + L   +   + 
Sbjct: 364 SAQLHQEVGETAETLGIDGLYILVDDPEAQAIAQGV-KTVETECFPTHEQLIQRLTEIIK 422

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GD ++ K+SNS G  R++
Sbjct: 423 PGDRILFKASNSVGLNRVV 441


>gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
 gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIYV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H  + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Arthrospira platensis NIES-39]
          Length = 468

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 155/495 (31%), Positives = 228/495 (46%), Gaps = 72/495 (14%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   I G         F V GI+ D+R++   E F A+ G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   VV+ +   S      P+  V D L A   LA + R R    +I +TGSV
Sbjct: 61  AAAIAKGALCAVVSREFAVS--HPEFPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+    L+  
Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNR--RLMST 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------GY 290
            +      TI ++G                E   ++ +L G     V  GI       G 
Sbjct: 237 ATQVWAGTTI-TYGL---------------EGGILQGELLGHETIRV-EGIDLPLPLPGS 279

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHP---------KEGRGKRYRCALNQGFFTL 341
           H A N L  L   ++L A     I A  ++ P          +GR KRY  A +     L
Sbjct: 280 HNASNFLAAL---AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADD---IML 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +DE+YNA   S  AA+ +L++   +   R IAVLG M E+GE S  FH  +       N+
Sbjct: 334 LDETYNAGLESTLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETERLNL 390

Query: 402 SHVWL--------------SGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             +++               G   + ++D A P++    +   +D +  F++     GD 
Sbjct: 391 DGLFILADLAEAQAMAEGAMGVDFIDIQDLASPQA----HQLMIDKVLAFLKP----GDR 442

Query: 447 VVVKSSNSCGFYRLI 461
           V+ K+SNS G  R++
Sbjct: 443 VLFKASNSVGMNRVV 457


>gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
 gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
          Length = 464

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 220/463 (47%), Gaps = 46/463 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S D+R    +  FFA+KG ++D HD++  AV++G   VVV  +    +  L +P  
Sbjct: 25  VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDVDVPQLIVP-- 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
              D   AL +LA   R++     IAITGS GKTT KEM    L  + +    +    G+
Sbjct: 83  ---DTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVAQDPDAVLFTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H GEI +   LV+P +A++  +A AHL  F  
Sbjct: 140 FNNDIGVPLTLLRLESKHKFAVIELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-R 261
           +E +A AK EI++GL + G   + Y+           H++  +  Y + +  NAD +L  
Sbjct: 200 VEGVAQAKGEIYQGLSENGIAIMEYE-----------HSVRYQKKYWYEQIGNADTRLFS 248

Query: 262 KWKQCSEQSWMEVQLQGK----SMEVVHHG--------IGYHMAQNMLMTLGIVSILTAD 309
              + S+    E++L       ++  +  G        +G H   N +    +   L   
Sbjct: 249 VMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKINLPYLGLHNVSNAVAAASLALCLGVS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++     L      +GR        N     L+D++YNAN +S+K+AI VL Q   + + 
Sbjct: 309 LEQIKAGLEKKSYVKGRLFPIEPCPN---LLLLDDTYNANVSSLKSAIDVLRQ---YDKF 362

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-- 427
            RI  +GDM E+G  S S H  +A+   + N+  V   G     +  A      VH+S  
Sbjct: 363 FRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVISSACD---GVHFSDK 419

Query: 428 -ETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRLINLLLEEF 468
            E ++ +   IQ  L    VV +VK +       +INL+ ++F
Sbjct: 420 TELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKF 462


>gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
 gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
          Length = 452

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 220/444 (49%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A + GAG ++V+  +       ++P  
Sbjct: 24  LDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVSRPL-----DTNLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL   G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFTGLSANGIAIMNADNN--DWLNWQS-IIGDRKVWRFSPNAANSDFSATNVHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324
            S  +   +Q    S++V+    G H   N L     +S+       AIKA L       
Sbjct: 256 TSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA-ALSMAVGATHEAIKAGLKDLQAVP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR    + A NQ    L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G  
Sbjct: 315 GRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAE 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S++ H+ +        I  V  +G    A+ DA    +  H+++    L   +++ + + 
Sbjct: 368 SEACHVQVGVAAKAAGIDRVLSTGKLSQAISDA--SGVGEHFADK-SALAAHLKALIAEH 424

Query: 445 DV--VVVKSSNSCGFYRLINLLLE 466
            V  ++VK S S     ++  L E
Sbjct: 425 QVMTILVKGSRSAAMEEVVRALQE 448


>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
 gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
          Length = 456

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 189/386 (48%), Gaps = 22/386 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G++IDSR + P + F AI G   DGHD++  A+++GAG  +V   +     S ++P  
Sbjct: 28  VSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQV-----SSALPQL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL       R      ++ ITGS GKTT K ML   LS      A  G+ NN 
Sbjct: 83  IVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAGSVVATKGNQNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTLA +  D ++ + ELG    G+I  L  + RP+IA++  +APAHL+NF  ++ I
Sbjct: 143 LGVPLTLADLNNDTEYAVLELGAGKPGDIARLCEMARPNIAILLNVAPAHLANFGSLDAI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKT-IYSFGKSKNADFQL--RK 262
           +  K  + + L   G   +N DD   F+      H     T   +FG +  AD+Q    +
Sbjct: 203 SKTKGALLDDLPADGLAVINADDPRVFDW-----HVRASPTRCLTFGMNCKADYQAIDLQ 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K  S   ++ +Q   + +EV  +  G     N L    +   L     T  + L+   P
Sbjct: 258 LKGFSGSDFV-LQTPEQDVEVTLNVPGRQGIYNALAAAAVADALGISAITIREGLAAVKP 316

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GRG     A+     +LID++YNANP +++AAI VL+   P   GRR  VLG M E+G
Sbjct: 317 APGRGG---VAVLSPDASLIDDTYNANPVAVRAAIDVLAS-EP---GRRRLVLGAMLELG 369

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
              +  H +L        +  +W  G
Sbjct: 370 LDEEKLHAELGVYAREAGLDELWAVG 395


>gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrospira platensis str. Paraca]
          Length = 465

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 155/496 (31%), Positives = 228/496 (45%), Gaps = 72/496 (14%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   I G         F V GI+ D+R++   E F A+ G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   VV+ +   S      P+  V D L A   LA + R R    +I +TGSV
Sbjct: 61  AAAIAKGALCAVVSREFAVS--HPEFPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+    L+  
Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNR--RLMST 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------GY 290
            +      TI ++G                E   ++ +L G     V  GI       G 
Sbjct: 237 ATQVWAGTTI-TYGL---------------EGGILQGELLGHETIRV-EGIDLPLPLPGS 279

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHP---------KEGRGKRYRCALNQGFFTL 341
           H A N L  L   ++L A     I A  ++ P          +GR KRY  A +     L
Sbjct: 280 HNASNFLAAL---AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADD---IML 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +DE+YNA   S  AA+ +L++   +   R IAVLG M E+GE S  FH  +       N+
Sbjct: 334 LDETYNAGLESTLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETERLNL 390

Query: 402 SHVWL--------------SGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             +++               G   + ++D A P++    +   +D +  F++     GD 
Sbjct: 391 DGLFILADLAEAQAMAEGAVGVDFIDIQDLASPQA----HQLMIDKVLAFLKP----GDR 442

Query: 447 VVVKSSNSCGFYRLIN 462
           V+ K+SNS G  R++ 
Sbjct: 443 VLFKASNSVGMNRVVE 458


>gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
 gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
          Length = 428

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 188/369 (50%), Gaps = 24/369 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I     F A+KG ++D + F   A++KGA  VV++     S   +      V+
Sbjct: 17  VSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDN----SKFYIDERTLLVE 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R     TII +TGS GKTTTKE++   L     T A IG+ NNHIGV
Sbjct: 73  DSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R   D + GI E+G +H  EI FL  + +P    IT    AHL  F G+E +   
Sbjct: 133 PLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGYITNFGKAHLEGFGGVEGVIKG 192

Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS 267
           K+E++  ++    T+F+N DD    L K KS+ L   T YSF  ++  AD  + K     
Sbjct: 193 KSELYNYIKNNNKTVFINADDP---LQKEKSNNL---TTYSFSTNETEADVTISKV---- 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +   VQ+      +  H IG + A N+   + I            +A+  + P+  R 
Sbjct: 243 -VANPMVQISFNDETINSHLIGIYNANNINAAITIGHYFKISDKLIKEAIENYIPENNRS 301

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N+    +I ++YNANP+SM+AAI+   Q+    +  +IA+LGDM E+GE S  
Sbjct: 302 QLIEKNGNK----IILDAYNANPSSMQAAITNFIQLE---DNSKIAILGDMFELGEESLL 354

Query: 388 FHIDLAEVL 396
            H  + E L
Sbjct: 355 EHKKIIEFL 363


>gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 472

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 228/459 (49%), Gaps = 36/459 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           ++ ++ D+R+++  E F AIKG   DG +    A+  GA   VV +D   ++ S + P  
Sbjct: 30  ISSLTADTRTVSGGEVFAAIKGARVDGAELAGAALSAGA-RAVVTSDPSTAVASGADPAR 88

Query: 85  VFGVDDVLGALNKLAVAARLRSKA------TIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           V  VDDV  A+  LA A   R++A       ++A+TGSVGKTT K++L   + S     A
Sbjct: 89  VIVVDDVEKAIGALARANLQRARAEGNPALKVVAVTGSVGKTTVKDLLASLVESRGPVIA 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             GS+NN +G+P+T+ R        + E+G  H+G I +LT +  P  + +  +A AHL 
Sbjct: 149 PPGSFNNELGLPITVLRTDAGTATLVLEMGADHVGNIDYLTSIAPPDASAVLIVARAHLG 208

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F GI+ +  AK+E+  G  + G + LN DD     +   +H      + +F      D 
Sbjct: 209 EFGGIDNVGRAKSELVTGTREGGVVVLNADDPRVAAMAGLAHG----PVLTFSARGAGDV 264

Query: 259 QLRKWKQCSE--QSWMEVQLQGKS---MEVV--HHGIGYHMAQNMLMTLGIVSILTADVD 311
             R     ++   S+  V  +G++   + +V  HH      A  +  +LG   I TA + 
Sbjct: 265 AARNIDVGADGRASFTLVTPEGEADVKLRLVGEHHVANALAAAALAHSLG---IPTAQIA 321

Query: 312 TAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           + + A+    P       +R  +   G  T+ID+SYNANP SM+A ++ L ++   G GR
Sbjct: 322 STLSAVGAASP-------HRMDVFEAGGATVIDDSYNANPDSMRAGLAALERL---GRGR 371

Query: 371 R-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSE 428
           R +AVLG+M E+GE S   H  + +  +   ++ +   G     L  A     +   ++ 
Sbjct: 372 RKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAVGEEARPLASAAEAEGVDATWAA 431

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +G    + ++L  GDVV+VK SN  G +++ + L EE
Sbjct: 432 GPEGALRELDAALAAGDVVLVKGSNGSGVWKVADSLREE 470


>gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
 gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
          Length = 463

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 218/462 (47%), Gaps = 45/462 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S D+R    +  FFA+KG ++D HD++  AV++G   VVV  +    +  L +P  
Sbjct: 25  VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDVDVPQLIVP-- 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
              D   AL +LA   R++     IAITGS GKTT KEM    L  + +    +    G+
Sbjct: 83  ---DTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVVQDPDAVLFTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R      F + ELG +H GEI +   LV+P +A++  +A AHL  F  
Sbjct: 140 FNNDIGVPLTLLRFEPKHQFAVIELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYSFG-KSKNADFQL 260
           IE +A AK EI++GL   G   + Y+ S   L K   H  +G      F  + K +D+  
Sbjct: 200 IEGVAQAKGEIYQGLNGKGIAIMEYEHSV--LWKKYWHEQIGDAETRLFSTQGKKSDYYA 257

Query: 261 RKWK----------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           ++ +           C+E   +E+ L           +G H   N +    +   L   +
Sbjct: 258 QEIRLTETGSQFKLCCTEHGEIEINLP---------YLGLHNVSNAVAAASLALCLGVSL 308

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L      +GR        N     L+D++YNAN +S+K+AI VL Q   + +  
Sbjct: 309 EQIKAGLEKKSYVKGRLFPIEPCPN---LLLLDDTYNANVSSLKSAIDVLRQ---YDKFF 362

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--- 427
           RI  +GDM E+G  S S H  +A+   + N+  V   G     + DA      VH+S   
Sbjct: 363 RIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVISDACD---GVHFSDKT 419

Query: 428 ETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRLINLLLEEF 468
           E ++ +   IQ  L    VV +VK +       +INL+ ++F
Sbjct: 420 ELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKF 461


>gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei 53G]
          Length = 452

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A ++     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLNAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 476

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 203/392 (51%), Gaps = 20/392 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W+   +    QG  +   P   ++GI+ DSR + P++ +  I G   DGHDFI  A   G
Sbjct: 18  WSVEAVAAITQGKVVH--PGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANG 75

Query: 65  AGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+ ++D + A  G +   + GV D   A+  LA A R R    ++A+TGS GKTTTK
Sbjct: 76  AAAVLCDSDHLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTK 135

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   +T    G++NN +GVPLTL ++    +  + E+GM+H GEI      VR
Sbjct: 136 DLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGEVR 195

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI VIT I  AHL N    E    AK EIF  +EK     +N DD +   + A+ +   
Sbjct: 196 PHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDIALINGDDPYLRRIVARDY--- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +    +  +AD +    ++  + S +  +  G        GI  H   N L+ + I 
Sbjct: 253 -RVVRVGIREPDADLKAEAIRE--DLSGLYFEADGVPFHFKWPGI--HNVYNCLIAIWIG 307

Query: 304 SILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                D D AI+A L  F P    G R + A   G    ++++YNANP SM+AA+  +  
Sbjct: 308 RYYHLD-DAAIQAGLDAFVPS---GNRMQMA-EVGGLRFVNDAYNANPESMRAAMDTVCA 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           ++   EGR+IAVLGDM E+GE ++++H  + E
Sbjct: 363 VA---EGRKIAVLGDMLEIGENAEAWHRAVGE 391


>gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
 gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
          Length = 452

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 214/448 (47%), Gaps = 33/448 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           +N I  DSR I   + F  ++G   DGH+FI  A   GA         VA+    +I   
Sbjct: 26  INAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGA---------VATFSEKNITSD 75

Query: 84  -PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P   V D L A   LA     + +  +IA+TGS GKTTTK+M+   L++  KTY   G+
Sbjct: 76  YPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTKDMIATILATTYKTYKTQGN 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNN IG+P T+  MP D +  + E+G  HLG+I  L++L  PHIAV+T I  AHL  F  
Sbjct: 136 YNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTHPHIAVVTLIGEAHLEFFGS 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E+IA  K +I +G++  G +    D      L  K      + +  FG    AD  +  
Sbjct: 196 REKIAEGKMQITQGMDGHGILIAPADKIINSFLPEK------QKVIRFG----ADEDIFV 245

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +    ++++  +      E+     G + A N ++   +  +L    +  I AL+  + 
Sbjct: 246 TELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNL 305

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+G
Sbjct: 306 TRNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELG 362

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HY---SETMDGLFLF 436
           +   + H  +   L    I  ++L G  + AL D + +   V   +Y   ++ +D L   
Sbjct: 363 DSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQ 422

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           IQ  L   D +++K SNS    +++  L
Sbjct: 423 IQKVLGPNDQILLKGSNSMKLAQVVECL 450


>gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 451

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 191/383 (49%), Gaps = 28/383 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88
           +S DSR +   E F A++GP++ G DF+  A  KG G V     +VA       +P   V
Sbjct: 33  VSTDSRRLQAGELFIALRGPNFRGEDFL--AAAKGQGAVAA---IVAEYQPDADLPQIVV 87

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL  LA   R RS+A   AITGS GKT+TKE+L   L +  +T A +G+ NN IG
Sbjct: 88  ADTLAALQALARDRRERSQAQFFAITGSNGKTSTKEILQRLLQTRGQTLATLGNLNNDIG 147

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  +  + + E+G +H GEI  L  L RP +A+IT +APAHL+ F  +E + +
Sbjct: 148 VPLTLLRLRDEDRYAVIEMGANHPGEIAALVALARPDVALITNVAPAHLAGFGTLEGVIA 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+EI+      G I LN D       + + H    +  Y+F  S N D  +      ++
Sbjct: 208 AKSEIYA--HSDGAIVLNLDLPAAARWQDQFHD---RPQYTF--SLNIDADVTAHDLAAD 260

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFHPKEG 325
            S   +++ G    V    +G H   N L       +  +  A +   +  L++   +  
Sbjct: 261 GSRFVLRVDGSDYPVAWQLVGRHNIMNALAACTAARLAGVSGAQMQATLTGLALHQSR-- 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                  A+  G  T+ D++YNANPAS KAAI VL+  +P      + + G M E+G   
Sbjct: 319 -----LAAIRVGAHTIYDDTYNANPASFKAAIDVLA-AAPQS----LIIAGAMGELGAEE 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
            + H D+A   +   IS  W  G
Sbjct: 369 VALHHDVATYAATRGISAFWSVG 391


>gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
 gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
          Length = 452

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    L+    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFTDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 462

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 224/469 (47%), Gaps = 29/469 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    + +    S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHAL 242
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K    
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK---- 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTL 300
               +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +
Sbjct: 242 ----VYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAI 297

Query: 301 G---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKAAI
Sbjct: 298 ACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            V+  I      R I +LG M E+G      H +++E      I  ++  G    A ++ 
Sbjct: 351 DVMKNIKGK---RTITLLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREG 407

Query: 418 LPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 408 FEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKEL 456


>gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
 gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
          Length = 454

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 23/449 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +S D+R+I     F A+ G  +D H+F   AV  GAG ++V   +      +++P 
Sbjct: 23  LIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRL-----DVNVPQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL + A       K   +AITGS GKTT KEM+   L    K     G++NN
Sbjct: 78  IVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ 
Sbjct: 138 DIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK- 262
           +  AK EI++GL   G   +N D +     +AK    L  K + +F +S  +ADF     
Sbjct: 198 VKQAKGEIYQGLSAGGIAIVNLDSNG----EAKWDEVLADKKVITFSQSNTDADFFASNI 253

Query: 263 -WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 E S+ + +    + +E+    IG H   N +    I   + A ++     L   
Sbjct: 254 VLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASIIALQMGATLEEVRAGLK-- 311

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G+    AL++    LID+SYNA+  +MKAA+ +L+       G+R  +LG+M E
Sbjct: 312 HLNKVKGRVEVEALSEK-IKLIDDSYNASVPAMKAAVDLLAAFP----GQRWLILGNMAE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439
           +GE S + H  + E  +     HV   G     + D L + IH   + E ++ +   +  
Sbjct: 367 LGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISD-LCQGIHFETHQEMIEYIKQHLDQ 425

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++ +   ++VK +N    + +   L E +
Sbjct: 426 AVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 462

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 228/471 (48%), Gaps = 33/471 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V +++  S G +     +  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIV-SEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L+   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P
Sbjct: 125 LVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241
            IA+IT I  +H+ N    E I  AK EI +   K   + +N DD   S FE  K K   
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298
                +Y  G  K  DF        +E    ++  QGK+      G+   G H   N L 
Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC-FGVNVPGKHNVLNSLT 295

Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++ I   D+ T IK L      +    R      +G FT+I++ YNA+P SMKA
Sbjct: 296 AIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI V+  I      R IA+LG M E+G      H +++E      I  ++  G    A +
Sbjct: 349 AIDVMKNIKGK---RTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYR 405

Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        +Y   ++      +I++ + DGD++++K+S +     ++  L
Sbjct: 406 EGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456


>gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
 gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
          Length = 453

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 216/476 (45%), Gaps = 49/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   AV  GA  ++
Sbjct: 9   LAQLTQGQLIG--DDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALL 66

Query: 70  VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V         +L +PV  V   D   AL +L      R +   +AITGS GKTT KEM+ 
Sbjct: 67  VER-------ALDLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T LVRP +A
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPDVA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E     +  L  K +
Sbjct: 180 LVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADKQV 236

Query: 248 YSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNM 296
            +F   S+ ADF             + +  QGK+  V+H            IG H   N 
Sbjct: 237 TTFSASSEQADFYATD---------IVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    I     A +      L    P +GR    + + N     LID+SYNA+  +MKAA
Sbjct: 288 IAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDN---IKLIDDSYNASVPAMKAA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + +L   +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +  
Sbjct: 345 VDLLGSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQ 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                   H+S+  + L  +I+ +L + +     V+VK +NS G  ++   L E +
Sbjct: 401 LCGGK---HFSDHGE-LIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 57-2]
          Length = 452

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A +Q    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAESQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2]
 gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 206/428 (48%), Gaps = 18/428 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D+ +A+       V +   +G+S DSR+I  Q+ F A++G  +DGH FI   V++G
Sbjct: 7   WRVADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV               F VD+ L AL  LA   RLR+   ++AITGS GKT+T++
Sbjct: 67  VRGFVVKKGQKIPKDVPGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTRK 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M          T    G+ NN IG+PLTL  + +D ++ + E+GM+H GEI  L  +  P
Sbjct: 127 MTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLDHEWAVVEMGMNHGGEIHRLGSIALP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LG 243
            I VIT  +  HL     +E +A AKAE+   +   G+  LN DD  F +  A   A   
Sbjct: 187 DIGVITNTSHCHLEGLGTVEGVARAKAELLPHVRVHGSAVLNLDDPRFPIFSAAVRANTA 246

Query: 244 IKTIYSFGKSK-NADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           I+ I  F   + N D          E+   +  V     + EV  H     M  N L   
Sbjct: 247 IENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVFLHTPARFMVSNALAAA 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAIS 358
           G        +D   + L  F P+ G     R  L  GF   T+ID++YNANP S+ AA+ 
Sbjct: 307 GAALAAGISMDVIKQGLEAFEPEPG-----RMHLEPGFNHTTIIDDTYNANPGSVGAALE 361

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVL--A 413
            L +++ +G G  IAVLGDM E+G  ++ FH ++  + +   IS ++  G    HV+  A
Sbjct: 362 TLERVTQNGVG--IAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGPMADHVIHGA 419

Query: 414 LKDALPRS 421
           +K   P S
Sbjct: 420 VKAGFPGS 427


>gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
 gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
          Length = 459

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 213/445 (47%), Gaps = 19/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR + P   F  IKG   DGH FI  A+Q GA   +   D         +P  
Sbjct: 26  VTSVQFDSRQLTPGSLFVPIKG-QRDGHQFIEQAIQAGAVATLWAKDH-EDTRPADLPSI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL KLA     +    ++AITGS GKTTTK+M    L++         ++NN 
Sbjct: 84  EVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLATEFNVVKTEANFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + ELGM   G++ FL+ LV+P IAVIT I  AH+  F   + I
Sbjct: 144 IGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL++ G    + D+    LL  ++ A+ ++    FG     D         
Sbjct: 204 ADAKMEITDGLKEDGCFIYDGDEP---LLAERAKAVDVEQ-RMFGMKNENDVFASDVAGT 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             ++  +  L  + +EV    IG +  +N L  + +       V  + +AL+ F+  + R
Sbjct: 260 DTETSFKTNLDPE-VEVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNR 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    QG   L D  YN+NP + KA ++  +       GRR  VLGDM E+GE + 
Sbjct: 319 TEWLKG--RQGERILSD-VYNSNPTAAKAVLNSFAHTKKT--GRRFVVLGDMLELGENAD 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439
             H  LA+ L+      V+L G H+ AL   L         ++H++ +  +  L   +Q 
Sbjct: 374 QMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQ 433

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            +   D V++K+S+     +++  L
Sbjct: 434 MIKADDCVLLKASHGIHLEKVVEQL 458


>gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
 gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
          Length = 452

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 211/449 (46%), Gaps = 35/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+    + F A++G  +DGH+++  A   GA   +V+  +      L +P + VD
Sbjct: 25  VGTDSRADCTGQLFVALRGERFDGHEYVAAAQAAGAVAAMVDQPL-----PLDLPQWVVD 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D    L +LA A R R    +IAITGS GKTT KEM+   LS   +  A  G+ NN IG+
Sbjct: 80  DTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVKEMVAAILSQAGRVRATRGNLNNDIGM 139

Query: 150 PLTL--ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           PLTL  AR   D DF + E+G +H GEI ++T + RP +A+IT    AHL  F  +E +A
Sbjct: 140 PLTLLSAR---DEDFLVLEMGANHHGEIGYMTEIARPEVALITNAGRAHLEGFGSVEGVA 196

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------ 261
            AK EI  GL + G   ++ D  +  L +  +     + + +F     AD          
Sbjct: 197 RAKGEIARGLPEDGVFVVSGDSPYLGLWRELAEG---RRMLTFALDGAADLTAGTESIGV 253

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +W     ++    ++  ++  +     G H  +N L        L  D       L    
Sbjct: 254 EWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALAASAGALALGLDRAAIAAGLESLT 313

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P +GR     C        +ID+SYNANP S+ AAI+VL+ ++    GRR  VLGD+ E+
Sbjct: 314 PVKGRLYPRLCR----EIGVIDDSYNANPDSIAAAIAVLAGLT----GRRTLVLGDLGEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQ 438
           G  +   H ++ E      +  +    F V  L     R+      H+++  D L   ++
Sbjct: 366 GADAARLHAEIGEQAHAAGLDRL----FTVGTLSAEASRAFGAGAEHFAD-QDALLNRLK 420

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + L  GD V+VK S      R++  L  E
Sbjct: 421 ADLKPGDRVLVKGSRLARMERIVEALCAE 449


>gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
 gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
          Length = 452

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 214/448 (47%), Gaps = 33/448 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           +N I  DSR I   + F  ++G   DGH+FI  A   GA         VA+    +I   
Sbjct: 26  INAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGA---------VATFSEKNITSD 75

Query: 84  -PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P   V D L A   LA     + +  +IA+TGS GKTTTK+M+   L++  KTY   G+
Sbjct: 76  YPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTKDMIATILATTYKTYKTQGN 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNN IG+P T+  MP D +  + E+G  HLG+I  L++L  PHIAV+T I  AHL  F  
Sbjct: 136 YNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTHPHIAVVTLIGEAHLEFFGS 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E+IA  K +I +G++  G +    D      L  K      + +  FG    AD  +  
Sbjct: 196 REKIAQGKMQITQGMDGHGILIAPADKIISSFLPEK------QKVIRFG----ADEDIFV 245

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +    ++++  +      E+     G + A N ++   +  +L    +  I AL+  + 
Sbjct: 246 TELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNL 305

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+G
Sbjct: 306 TRNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELG 362

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HY---SETMDGLFLF 436
           +   + H  +   L    I  ++L G  + AL D + +   V   +Y   ++ +D L   
Sbjct: 363 DSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQ 422

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           IQ  L   D +++K SNS    +++  L
Sbjct: 423 IQKVLGPNDQILLKGSNSMKLAQVVECL 450


>gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 217/456 (47%), Gaps = 31/456 (6%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I   P   V+GI+ DSRSI   +AF A+KG +++GHDFI  A+ +GA  ++V+  +  + 
Sbjct: 22  ISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIARGAAALIVDQPVSVNY 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            S +IPVF V + L    +LA   R +    +IAITGSVGKTTTKE++   L++  K + 
Sbjct: 82  SS-NIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATRGKVHK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            + +YNN IGVP TL  +    D  + E+GM   GEI  L  + +P IAVIT +  AH+ 
Sbjct: 141 TLANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIG 200

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                  IA AK E+      +    LNYD        AK    G    Y F       F
Sbjct: 201 RLGSESAIAEAKCELLSESPSSSIAVLNYDHPLLT-ETAKRVWQGETITYGF-------F 252

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 +  + + + V     ++ +     G H A N +  L +  IL  D  +  + + 
Sbjct: 253 GGDIVGELLDLTTLRVNGLDFNLPLS----GRHHALNFMAALAVAKILGIDWTSLQQGIK 308

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V  P  GR KRY+   +     L+DE+YNA   SM AA+ +L         R +AVLG M
Sbjct: 309 VNLPS-GRAKRYQLEPD---ILLLDETYNAGLESMLAALDLLKATPGQ---RHLAVLGTM 361

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL------SGFHVLALKDALPRSIHVHYSETMDG 432
            E+G  S+  H  + E +    I  +++      + F   A           H ++ ++ 
Sbjct: 362 KELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIAEAATGVACECFQTH-ADLINR 420

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L   I S    GD ++ K+S+S G  R++  L+ + 
Sbjct: 421 LKEVIDS----GDRILCKASHSVGLNRVVEELISDI 452


>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
 gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
          Length = 445

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 141/469 (30%), Positives = 221/469 (47%), Gaps = 37/469 (7%)

Query: 11  LQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L AI G ++   PQ        G+S D+R + P   F A+ G  +DGHD++  A Q GA 
Sbjct: 5   LTAILGENLRRSPQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQAGAI 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +  +        +P + V+D L A   L    R +    +I ITGSVGKT+TKE++
Sbjct: 65  ALITSRPL-----ETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGITGSVGKTSTKELI 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  K      ++NN IGVP TL  +  D DF + E+ M   GEI  L  + +P I
Sbjct: 120 AGILGTQGKVLKTEANFNNEIGVPKTLLNLTPDHDFAVIEMAMRGPGEIARLAEIAQPTI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT +  AH+      E IA AK E+ E + K     LN D+   ELL A +  +    
Sbjct: 180 GIITNVGTAHIGRLGSREAIAKAKCELLEFMPKDSVAMLNADN---ELLMATAATVWSGE 236

Query: 247 IYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             S+G S+     ++      + ++Q +  V L G+           H A N L  LG++
Sbjct: 237 TLSYGFSQGDLTGEYIAPDQVKVADQVF-PVPLAGQ-----------HNALNYLAALGVM 284

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L          +S+  PK   G+  R  L      L+DE+YNA   SM AA+ +L Q 
Sbjct: 285 QVLGFGWQGLTTEISLAMPK---GRSQRIVLPNDIV-LLDETYNAGLESMLAALDLLKQT 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPRS 421
              G+ R IAVLG M E+GE S++ H  + E      +   +V +      A+ D     
Sbjct: 341 P--GD-RHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVLVDDPEAQAIADGALGV 397

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + + +    L   +++++  GD ++ K+SNS G  R++  L + + A
Sbjct: 398 PSLCFPDHRS-LIEHLRANMQPGDRLLFKASNSVGLSRVVEALQQTYSA 445


>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
 gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
          Length = 454

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 215/461 (46%), Gaps = 42/461 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +++QA++G S G      V  IS D+R+I     F A+KG ++DGHDF   A++ GA 
Sbjct: 6   LSEIIQAVRG-SYGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQAMEAGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            VV              PV G     VD    AL   A   R R    ++ ITGSVGKTT
Sbjct: 65  AVVTER-----------PVDGARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   +S   KT     ++NN +G+P TL  +       + E+GM+H GEI  ++  
Sbjct: 114 TKEMIWSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMSTS 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + VIT I  +H+ N    E I  AK EI +G      + L+ DD       +K   
Sbjct: 174 CKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDDRIL----SKVQV 229

Query: 242 LGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            G + I+ +  S K++D         S+     +    + +    + +G H  +N L   
Sbjct: 230 YGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAF 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + + L  D    I  L+ F P+   G R       G   ++D  YNA P SMKA++SVL
Sbjct: 290 CVGAALGMDNADIIAGLADFRPE---GMRQNIIEENGVTYILD-CYNAAPDSMKASLSVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHV 411
            Q+S    GRRIAVLGDM E+G+ S  +H  + E         +L     S+ ++ G   
Sbjct: 346 GQVSVR--GRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNYYIEG--- 400

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            A      R+   H+ ++ + L   ++  L +GD V+ K S
Sbjct: 401 -ACDKGFDRANTAHF-DSREELAEHLKGILKEGDAVLFKGS 439


>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 460

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 207/398 (52%), Gaps = 46/398 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           + GI IDS+ I     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 33  IQGICIDSKKIKKGNLFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LS+  + +  
Sbjct: 83  PKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKDIINTILSTTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSKIAQPDVAIITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258
               EEIA AK EI +GL+  G    N D+    LLK K+  L      +FG+    DF 
Sbjct: 203 LGSREEIAKAKLEIIDGLKDEGLCLYNGDEPL--LLKNKN--LSSINCKAFGEKYTNDFF 258

Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               QL ++    K        +V L GK   +++  +G  + Q         ++    +
Sbjct: 259 PTNVQLDEYGIHFKLNDSNIQYDVPLHGKH-NILNAIVGIAIGQ-------YYNVPVEKI 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A++ +++ H       R++    +  FT+I++++NA+P+SMKAAI     ++ +   +
Sbjct: 311 QKALRQVNITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETFQTLNAY--KK 362

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G
Sbjct: 363 KIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYG 400


>gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
          Length = 452

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 218/444 (49%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +        +P  
Sbjct: 24  LDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVSRAL-----DTDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A I+A+TGS GKT+ KEM    LS   KT    G+ NN 
Sbjct: 79  VVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTAAILSRCGKTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL   G   +N D++ +   +   + +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFTGLSANGIAIMNADNNDWLNWQ---NIIGDRKVWRFSPNAANSDFSATNVHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324
            S  +   +Q    S++V+    G H   N L     +S+       A+KA L       
Sbjct: 256 TSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA-ALSMAVGATPEAVKAGLKDLQAVP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR    + A NQ    L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G  
Sbjct: 315 GRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAE 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S++ H+ + E      I  V  +G    A+  A    +  H+++    L   +++ + + 
Sbjct: 368 SEACHVQVGEAAKTAGIDRVLSTGKLSQAISHA--SGVGEHFADKT-ALVAHLKALIAEH 424

Query: 445 DV--VVVKSSNSCGFYRLINLLLE 466
            +  ++VK S S     ++  L E
Sbjct: 425 QIITILVKGSRSAAMEEVVRALQE 448


>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 451

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 212/398 (53%), Gaps = 46/398 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+SI     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 24  IHGVCIDSKSIKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 73

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VDD L AL +LA   R      +I ITGS GKTT K++++  LS+  + +  
Sbjct: 74  PKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTVKDIISTILSTTHRVHKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P I +IT I  +HL  
Sbjct: 134 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSIIAQPDIVIITMIGHSHLET 193

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258
               EEIA AK EI +GL+  G    N D+    LLK K+  L   T  +FG+    D  
Sbjct: 194 LGSKEEIAKAKLEIIDGLKDEGLCLYNGDEPL--LLKNKN--LSSITCKAFGEKYTNDLF 249

Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               QL ++    K    +   +V L GK   +++  +G  + Q         ++ T  +
Sbjct: 250 PTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-NILNAIVGIAVGQ-------FYNVPTEKI 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A++ +++ H       R++    +  FT+I++++NA+P+SMKAAI  L  ++ +   +
Sbjct: 302 QKALRQVNITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQTLNAY--KK 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           ++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G
Sbjct: 354 KMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYG 391


>gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia sp. 4_1_40B]
 gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli H736]
 gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
 gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli]
 gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli DH1]
 gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Escherichia coli ETEC H10407]
 gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia coli DH1]
 gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1520]
 gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
          Length = 452

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442
           ++ H+ + E      I  V   G    A+  A    +  H+++    +  L L I    V
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               ++VK S S     ++  L E
Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448


>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
 gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
          Length = 456

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 207/454 (45%), Gaps = 44/454 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR I     F AI+G   DGH FI  ++  GA   V        I S S P  
Sbjct: 28  VTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIHDGALCAVSEK----RIESASYPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+    AL  +A   R   +  ++ I+GSVGKT+TKEM+   L          G++NN 
Sbjct: 84  MVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTSTKEMIASVLGQKYNVLKTEGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G+S  GE+  L  + RP + V+T I  AHL      E I
Sbjct: 144 IGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSREGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+F  +   G I LN DD     +   +H   I+ ++         F L      
Sbjct: 204 LKAKTEMFLYMNPKGDIILNGDDDMLASVTPANH---IEPVF---------FGLDPALAY 251

Query: 267 SEQSWMEVQLQGKSMEV--------VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           S +    + L+G S            H  I G HM  N L  + +  +L  +     + +
Sbjct: 252 SAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAAIAVGRVLGMNDGEIRQGI 311

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               P  GR       +   F T+ID+ YNANPASMKA++ VLS+     +G  +A+LGD
Sbjct: 312 ESLVPLAGRNN----LIETEFLTIIDDCYNANPASMKASLDVLSK----AKGHTVAILGD 363

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETM 430
           M E+G  +   H +  E  +   I  +   G+    L + + R        + VH+ +T 
Sbjct: 364 MFELGPKAHEMHCETGEFAAEAGIDELICIGY----LSEDIARGAVSANPEMEVHHFDTK 419

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 I + +   D ++VK+S++  F  ++ +L
Sbjct: 420 TEFLDHIDTLINKDDTILVKASHAMEFPEIVEIL 453


>gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E482]
          Length = 452

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442
           ++ H+ + E      I  V   G    A+  A    +  H+++    +  L L I    V
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               ++VK S S     ++  L E
Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448


>gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
 gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 219/445 (49%), Gaps = 22/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ D+R ++    F A++G  +D HDF+  A+  GA  ++V+  +  ++  + +   
Sbjct: 24  VDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMAAGASALLVSKHVTVAVPQVVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +LA   R +S A ++A+TGS GKT+ KEM    L    +T    G+ NN 
Sbjct: 82  ---DTRIALGQLAGWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+     + + ELG +H GEI + T + RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLNASHQYAVVELGANHQGEIAYTTEITRPETALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWK 264
           A AK EIF+GL   GT  LN D + +   +   H+L  KT++ F  +  A  DF     K
Sbjct: 199 AKAKGEIFQGLPINGTAILNADSNDWPHWQ---HSLHSKTVWRFSSAPQADSDFSATDVK 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             S  +   +     S+ +     G H   N L    +   + A +    K LS  H + 
Sbjct: 256 VTSSGTHFVMITPAGSIAIQLPLPGRHNIANALAAAALALSVDAPLSAIQKGLS--HLQA 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G+ Y  AL +    L+D+SYNAN  SM AA  VLS++     G R+ V+GDM E+G+ 
Sbjct: 314 VPGRLYPVALAENKL-LLDDSYNANVGSMTAAAQVLSEMP----GYRVMVVGDMGELGDE 368

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           ++  H ++ E   L  I  V   G     + +A     H+     +      +Q+ L + 
Sbjct: 369 AEECHREVGEAARLAGIDKVLSVGKMSHLISEASGAGEHLQDKAAVTA---RLQTLLAEH 425

Query: 445 DV--VVVKSSNSCGFYRLINLLLEE 467
           DV  ++VK S S    +++  L E+
Sbjct: 426 DVITILVKGSRSAAMEQVVQSLQEK 450


>gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
 gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
          Length = 453

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 216/476 (45%), Gaps = 49/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   AV  GA  ++
Sbjct: 9   LAQLTQGQLIG--DDAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALL 66

Query: 70  VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V         +L +PV  V   D   AL +L      R +   +AITGS GKTT KEM+ 
Sbjct: 67  VER-------ALDLPVAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T LVRP +A
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPDVA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E     +  L  K +
Sbjct: 180 LVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADKQV 236

Query: 248 YSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNM 296
            +F   S+ ADF             + +  QGK+  V+H            IG H   N 
Sbjct: 237 TTFSASSEQADFYATD---------IVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    I     A +      L    P +GR    + + N     LID+SYNA+  +MKAA
Sbjct: 288 IAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDN---IKLIDDSYNASVPAMKAA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + +L   +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +  
Sbjct: 345 VDLLGSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQ 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                   H+S+  + L  +I+ +L + +     V+VK +NS G  ++   L E +
Sbjct: 401 LCGGK---HFSDHGE-LIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 453

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 187/380 (49%), Gaps = 17/380 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R +A    F A+KG  +D HD+   AV+ GA  ++V+  +      +++P  
Sbjct: 24  IDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHL-----PINVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L    R +S A ++A+TGS GKT+ KEM    L          G++NN 
Sbjct: 79  LVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  F + ELG +H+GEI + T LVRP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264
           A AK EIF GL   G   +N D + F   +     L  KT++ F      + DF      
Sbjct: 199 AQAKGEIFSGLPADGVAIVNADSNDFPHWQVM---LNHKTVWRFSPQAACDIDFFASDVD 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ +   +       +V+    G H   N L    +   + A ++     LS      
Sbjct: 256 VLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLAMSVGATLEAVKAGLSQLQAVP 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR   +  AL++G   L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+ 
Sbjct: 316 GR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGDE 368

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           +   H  + E      I  V
Sbjct: 369 APECHRQVGEAARAAGIDRV 388


>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 196/393 (49%), Gaps = 23/393 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A+ G  I    +G  N IS D+R I     F A+KG +++G+D+ + A++KGA ++
Sbjct: 7   EIIKAVDGEIIVKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKGASII 66

Query: 69  VVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +++ D+   I  L     +  V D   AL  LA   R +    ++ ITGS GKT+TK+++
Sbjct: 67  IID-DVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTKDLV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   K +   G++NN IG+PL +  +  D D  + E+GMS+ GEI  L  +  P +
Sbjct: 126 AAFLSGKYKVFKTQGNFNNEIGLPLMIFELSKDYDIAVLEMGMSNFGEINKLASIALPDV 185

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHAL 242
             IT I  AH+      E I   K  I +  E   ++ +N ++   + +    K     +
Sbjct: 186 GAITNIGVAHIEYLKTRENILKEKMSITDFFENKNSLIVNCENDMLKTIVECDKFNLERV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLG 301
           G  + Y+   SKN        K  SE +  +V     ++     + +G H   N L+ + 
Sbjct: 246 GYDSTYNL-YSKN-------IKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIGIQ 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   K L  F+    R +     +N+  FT+I++SYNANP SMKAA+ VL 
Sbjct: 298 IARNFGLTFEEMEKGLGNFNATSMRLE----VINKDKFTIINDSYNANPDSMKAALEVLK 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             S     R+IAVLG M E+G+ ++  HI + E
Sbjct: 354 NYSGS---RKIAVLGTMGELGDYAEEAHIQVGE 383


>gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 455

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 211/446 (47%), Gaps = 20/446 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +            +I
Sbjct: 21  QTVITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++
Sbjct: 78  AVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   
Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTR 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI + L + G    N D+    LL+ ++  L  +   +FG           +
Sbjct: 198 DKIADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFRDEDTVHATGF 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     +   +    +   +    IG H   N +  + +        +    +LS F P 
Sbjct: 254 KSYMHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPT 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +    +   + +   YN+NP +++A ++   Q+     GRRIAVLGDM E+G+
Sbjct: 312 ANRMEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGK 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438
            S + H  L++ L    I+ V+L G  +  L DAL     P  +H +  + MD +   ++
Sbjct: 369 NSPALHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYKPEHLHYYTKDQMDRMIDDLK 428

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           + +   D+VV+K S+  G Y L N+L
Sbjct: 429 NDIKSDDIVVLKGSH--GMY-LENVL 451


>gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli]
 gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli K-12]
          Length = 452

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 215/444 (48%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A    AG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPERALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442
           ++ H+ + E      I  V   G    A+  A    +  H+++    +  L L I    V
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               ++VK S S     ++  L E
Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448


>gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK160]
          Length = 456

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 216/444 (48%), Gaps = 31/444 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR I P   F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDD
Sbjct: 30  EFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL--SERPVAEGAYIL----VDD 82

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           VL A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P
Sbjct: 83  VLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLP 142

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T+  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K
Sbjct: 143 YTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGK 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +  
Sbjct: 203 MQIADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSL 254

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +     + +++   G  Y+    M+     +    +D D A +A S       R + +
Sbjct: 255 SFDCNFLEQKIDLPVTG-KYNATNAMIAAYAALQEGVSDADIA-QAFSELELTRNRTE-W 311

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  ++S H 
Sbjct: 312 KKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHG 369

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSS 440
            +   L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  
Sbjct: 370 SMITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREK 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L   D +++K SNS    +L+  L
Sbjct: 429 LTPADQILLKGSNSMNLAKLVEDL 452


>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
 gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 480

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 142/463 (30%), Positives = 221/463 (47%), Gaps = 48/463 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84
           +G  IDSR +   E FFA+ G   DGHD+I  A QKGA +V+   + +     + +P   
Sbjct: 15  SGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGK 74

Query: 85  -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V+  L A+  LA A R    A ++AITGS GKTTTK+M+   LS   + +  + + 
Sbjct: 75  ALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEKYRVHKNMENQ 134

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P+T+   P + +  I E+GM  LG+I FL  + RP I VIT I   H+      
Sbjct: 135 NNELGLPMTILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVITNIGTTHMELLGSQ 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDD-------------SFFELLKAKSHALGIK--TIY 248
           + IA AK E+ E L +TG+  LN +D             +FF  L+ + H   ++   + 
Sbjct: 195 QAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQDSHQTFFYGLEGRFHEPDLRGMNLT 254

Query: 249 SFG----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLG 301
            FG    + +    Q+    +C+   + EV  +       H  +   G H   + L  L 
Sbjct: 255 PFGILGTRFQVGHRQVGHGDRCA-VPFAEVAAEVGQKTCPHVSLPLPGEHNVLDALAALS 313

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISV 359
           +  +L   ++   + L+          R R  L+QG    TLI + YNANP SMKA++ V
Sbjct: 314 VGILLDVSLEEGCRGLAAMELS-----RMRLELHQGPEGSTLISDVYNANPTSMKASLQV 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
           L +    G    +A+LG+M E+GE S+  H ++ + ++   IS +   G         AL
Sbjct: 369 LKE---RGGASTLAILGEMYELGEASREGHYEVGQTVAELGISELITVGPLAEEIACGAL 425

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSN 453
           +  L P+ IH       +G     Q  L D   G  V++K+S 
Sbjct: 426 EKGLSPQRIHSFPDR--EGAIKKAQELLADLNQGTWVLIKASR 466


>gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 3431]
          Length = 452

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442
           ++ H+ + E      I  V   G    A+  A    +  H+++    +  L L I    V
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               ++VK S S     ++  L E
Sbjct: 427 --ITILVKGSRSASMEEVVRALQE 448


>gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 452

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 219/438 (50%), Gaps = 21/438 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A + T    L+      GR    +
Sbjct: 262 FTLQTPRGSIDVLLPLPGRHNIANALAAAALSMAVGATLTTIKAGLATLKAVPGRLFPVQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ HI 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHIQ 374

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVV 449
           + E      I  V  +G    A+  A    +  H+++    L   +++ L +  +  ++V
Sbjct: 375 VGEAAKAAGIDRVLSTGKRSQAISHA--SGVGEHFADKA-ALIARLKALLQEQPMMTILV 431

Query: 450 KSSNSCGFYRLINLLLEE 467
           K S S     +++ L E+
Sbjct: 432 KGSRSAAMEDVVHALQEK 449


>gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 455

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 206/431 (47%), Gaps = 18/431 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSRS+  Q A F       DGH+F+  A Q GA   +   D         IP+ 
Sbjct: 25  ITSVSFDSRSLE-QGALFVPLIASNDGHEFVEAAKQNGACAALWQKDHENR--PQGIPLL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL K+      +    ++AITGS GKTTTK+M+   LS+         ++NNH
Sbjct: 82  IVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKDMIAAVLSTQFNVAKTHDNFNNH 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM H GE+  L HL+ P +AVIT I  AH+  F   + I
Sbjct: 142 IGVPMTVLSMEPNTEILVVEIGMDHFGELDHLVHLLDPDVAVITMIGEAHIEFFKTRDRI 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI   L++ G +  N D+    LL  ++  L  +T  +FG   N D Q +     
Sbjct: 202 ADAKMEITHALKEDGLLVYNGDEP---LLIERAEKLDFET-KTFGTGANVDLQAQNIVSD 257

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +E++   V+ Q   +      IG +  +N L  L + S    D  + +KAL  F     R
Sbjct: 258 AEKTSFRVK-QWPELNFTIPMIGAYNVKNALAALCVGSEFQIDPRSMVKALEHFDLTRNR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  + +       ++ + YN+NP +    ++     +    GRR AVLGDM E+GE   
Sbjct: 317 TEWVKAS---NGADILSDVYNSNPTACAEVLTAFQ--NAETTGRRYAVLGDMLELGEQGP 371

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSL 441
             H  LA+ +    +  V+L G  +  L +AL        IH + +   + L   ++  L
Sbjct: 372 KMHAGLADKIDPKKVDEVFLCGPLMKNLAEALTDKFDQGKIHHYATGEKEQLVSDLKERL 431

Query: 442 VDGDVVVVKSS 452
              D+V++K S
Sbjct: 432 RSEDMVMLKGS 442


>gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
 gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
          Length = 454

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 218/448 (48%), Gaps = 23/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I     F A+ G  +D HDF   AV+ GAG ++V   +     ++++P  
Sbjct: 24  IESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQKTL-----NVNVPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL ++A       +   +AITGS GKTT KEM+   L    K     G++NN 
Sbjct: 79  VVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHVGEIEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK-- 262
             AK EI++GL   G   +N D +     +AK    L  K + +F ++  +ADF      
Sbjct: 199 KQAKGEIYQGLAAGGIAIVNLDSNG----EAKWDQVLADKKVITFSQNNTDADFYASNIV 254

Query: 263 WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                E S+ + +    + +E+    IG H   N +    I     A ++     L   +
Sbjct: 255 LNAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASIIALQFGATLEEVRTGLKHLN 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR +    + N     LID+SYNA+  +MKAA+ +LS      +G+R  +LG+M E+
Sbjct: 315 KVKGRVEVEELSDN---IKLIDDSYNASVPAMKAAVDLLSAF----QGQRWLILGNMAEL 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSS 440
           GE S + H  + E  +     HV   G     + + L   IH   + E +D +   +  +
Sbjct: 368 GEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDGIHFETHQEMIDYIKQHLDQA 426

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +   ++VK +N    + +   L E +
Sbjct: 427 GPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Clostridium cf. saccharolyticum K10]
          Length = 476

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 216/439 (49%), Gaps = 28/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-------VASIGSLS 82
           ISIDSR+   +  F  + G   DGH FI+ A+++GA  V  +           A+     
Sbjct: 29  ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 88

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                VDD   AL +L    R R    ++ ITGSVGKTTT+EM+  ALS+    +    +
Sbjct: 89  AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSAGFHVFKTPAN 148

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ +GVPLTL+++    + G+ ELGMS  GE+  +  +    +AVIT +   H+ N   
Sbjct: 149 HNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLGT 208

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--- 259
            E I   K +I +G+   G +FLN D+    + +A+    G KT+Y FG  +NAD++   
Sbjct: 209 RENILREKLKIQDGMRADGPVFLNGDNDLLGISRARE---GHKTVY-FGTGENADYRAVD 264

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +R  + C   + +  +   + + V    +G H   N L  L +       ++ A + L  
Sbjct: 265 IRLERGCPSFTMVHGE---RRIPVTLSVMGEHNVLNALAALAVADYNGVPLEAAAEKLRE 321

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G   R +    QG  T+ID++YNA+P SMKAA+ VLS        RR+AVL DM 
Sbjct: 322 FT---GFKNRQQIREKQG-ITVIDDTYNASPDSMKAALRVLSSFGQA--RRRVAVLADMK 375

Query: 380 EMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           E+G   + FH ++ E L+   +  +     L+G      ++  P S+        + +  
Sbjct: 376 ELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGARERRP-SLQTAAFTDREKMTE 434

Query: 436 FIQSSLVDGDVVVVKSSNS 454
           F++  L  GD V+ K SNS
Sbjct: 435 FLKRELSAGDCVLFKGSNS 453


>gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
 gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
          Length = 456

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 178/370 (48%), Gaps = 24/370 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+IAP + F A+ GP +DGHD++     KGA   +V  +    + +  +P   V 
Sbjct: 28  VGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAAKGAVAALVERE----VANAPLPQLLVA 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHI 147
           D   AL +L    R      + A+TGS GKT+ KEML   L +       A  G+ NN +
Sbjct: 84  DTRLALGQLGALNRQAFTGPLAAVTGSSGKTSVKEMLAAILRAGLNGAVLATRGNLNNDL 143

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL  +  +   G+ ELG +H+GEI +   L RP + +IT    AH+  F G E+I 
Sbjct: 144 GAPLTLLELAPEHRAGVIELGANHVGEIAYTVSLTRPQVTIITNAGNAHVGEFGGPEKIV 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ----LRK 262
            AK EI EGL + G   LN DD  F   + ++       + SF  +   ADF      R 
Sbjct: 204 QAKGEILEGLAQDGVAVLNLDDKAFSTWQRRAAG---HQVLSFALRDTRADFHGSDLARD 260

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            + C  Q +      G S+ +  + +G H   N L        L   +    K L    P
Sbjct: 261 ERGC--QGFTLRSPVG-SVRIQLNLLGEHNVANALAACAAAHALGLPLVAMAKGLENLQP 317

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR       L      +ID+SYNANP SM AA+ +L+  S    GR + VLGDM E+G
Sbjct: 318 VKGRAV---AQLAPNGMRVIDDSYNANPVSMCAAVDILAGFS----GRTVLVLGDMGELG 370

Query: 383 ELSQSFHIDL 392
           E ++  H D+
Sbjct: 371 EWAEQGHRDV 380


>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
 gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
          Length = 480

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 216/439 (49%), Gaps = 28/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-------VASIGSLS 82
           ISIDSR+   +  F  + G   DGH FI+ A+++GA  V  +           A+     
Sbjct: 33  ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 92

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                VDD   AL +L    R R    ++ ITGSVGKTTT+EM+  ALS+    +    +
Sbjct: 93  AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSAGFHVFKTPAN 152

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ +GVPLTL+++    + G+ ELGMS  GE+  +  +    +AVIT +   H+ N   
Sbjct: 153 HNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLGT 212

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--- 259
            E I   K +I +G+   G +FLN D+    + +A+    G KT+Y FG  +NAD++   
Sbjct: 213 RENILREKLKIQDGMRADGPVFLNGDNDLLGISRARE---GHKTVY-FGTGENADYRAVD 268

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +R  + C   + +  +   + + V    +G H   N L  L +       ++ A + L  
Sbjct: 269 IRLERGCPSFTMVHGE---RRIPVTLSVMGEHNVLNALAALAVADYNGVPLEAAAEKLRE 325

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G   R +    QG  T+ID++YNA+P SMKAA+ VLS        RR+AVL DM 
Sbjct: 326 FT---GFKNRQQIREKQG-ITVIDDTYNASPDSMKAALRVLSSFGQA--RRRVAVLADMK 379

Query: 380 EMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           E+G   + FH ++ E L+   +  +     L+G      ++  P S+        + +  
Sbjct: 380 ELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGARERRP-SLQTAAFTDREKMTE 438

Query: 436 FIQSSLVDGDVVVVKSSNS 454
           F++  L  GD V+ K SNS
Sbjct: 439 FLKRELSAGDCVLFKGSNS 457


>gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
 gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
          Length = 453

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 215/476 (45%), Gaps = 49/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   AV  GA  ++
Sbjct: 9   LAQLTQGQLIG--DDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALL 66

Query: 70  VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V         +L +PV  V   D   AL +L      R +   +AITGS GKTT KEM+ 
Sbjct: 67  VER-------ALDLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T LVRP +A
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPDVA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E     +  L  K +
Sbjct: 180 LVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADKQV 236

Query: 248 YSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNM 296
            +F   S+ ADF             + +  QGK+  V+H            IG H   N 
Sbjct: 237 TTFSASSEQADFYATD---------IVLDTQGKASFVLHTPEERIPVSLGIIGQHNVANA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    I     A +      L    P +GR    + + N     LID+SYNA+  +MKAA
Sbjct: 288 IAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDN---IKLIDDSYNASVPAMKAA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + +L   +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +  
Sbjct: 345 VDLLGSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQ 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                   H+S   + L  +I+ +L + +     V+VK +NS G  ++   L E +
Sbjct: 401 LCGGK---HFSNHGE-LIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
 gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
          Length = 469

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 217/445 (48%), Gaps = 17/445 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPV 85
           I+ D+R I+  + F A++G  +DG DF   A+++GA  V+V T +  S    +      V
Sbjct: 31  ITTDTRKISSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKGTV 90

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD L A   +A A R++    +IAITGS GKTTTKE+    LS   K      +YNN
Sbjct: 91  LKADDGLRAYQAIAHAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRGKVCRTAENYNN 150

Query: 146 HIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
            +G+PLTL  + V  DF  + E+GM  LG+I  L  +  P I ++T +   H+     IE
Sbjct: 151 EVGLPLTLLGI-VPEDFAAVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLGSIE 209

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AKAE+ E +   GT+ LN DDS    +++ + A G++ I ++    +AD +    +
Sbjct: 210 NIAKAKAELVEAIPSGGTVILNADDSRVAAMRSFA-ADGVR-ILTYAIDADADVRAEALQ 267

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ S   V    +  E      G H   N   TL  ++   A   T  +  +     E
Sbjct: 268 CAADGSRFMVTYANERHEYAVSLPGRHNVSN---TLAALAAGFALGLTPQEMQAGLRNIE 324

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   RY    + G +  I+++YNA+P+SM AA+   + + P   GR+IAVLGDM E+G  
Sbjct: 325 GTKMRYETE-SVGAWMFINDAYNASPSSMHAALETTAALYP---GRKIAVLGDMLELGAA 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLV 442
           ++  H  +    +    + V   G     + +A   +      ++ET +     ++  L 
Sbjct: 381 AEEAHRMIGRRAAELGFAAVVTYGPQARWIHEAAEETGCAACFHAETHEEAAQLLRKILS 440

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           DGD V+ K S      ++I LL  E
Sbjct: 441 DGDTVLFKGSRGMRMEQVIALLTGE 465


>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
 gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
          Length = 468

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 228/468 (48%), Gaps = 57/468 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLS- 82
            +  I+ D+R++ P E F A++G ++DGH+F+  A++KGA  V+V  +  + + I  LS 
Sbjct: 29  LITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSN 88

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IP+  V++ L A  K+A   R R    +I++TGSVGKTTTKE++   L++  K      
Sbjct: 89  NIPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQGKVMKTEA 148

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IGV  TL ++  + ++ + E+ M   GEI  LTH+  P I +IT +  AH+    
Sbjct: 149 NYNNEIGVAKTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLITNVGTAHIGRLG 208

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E IA AK E+   +  +    LNYD+    L++  +     +T +++G          
Sbjct: 209 SVEAIAEAKCELLREMSDSSIAILNYDNQ--RLIETAAKVWSGET-FTYGLEGG------ 259

Query: 262 KWKQCSEQSWMEVQLQGK---SMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVD 311
                         LQGK   S  +   G+       G H A N L  L ++ +L     
Sbjct: 260 -------------NLQGKLIDSQTINVEGVDLPLPLPGSHNASNYLAALAVLKVLHGK-- 304

Query: 312 TAIKALSVFHPKEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             I A ++F            G R R    +    ++DESYNA   SM AA+++L++   
Sbjct: 305 -NIPAKTLFQSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPG 363

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFH---VLALKDALPRS 421
               R IAVLG M E+G  S  FH  +  V+   NI  ++ L+ F     +A   A  + 
Sbjct: 364 K---RHIAVLGTMKELGNKSILFHQQVGNVVKNLNIDGLFILADFEEAKAMATGAASLQF 420

Query: 422 IHVHYSETMD----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           I V  + T D     L  ++Q  L  GD V+ K+S+S    +++ LL+
Sbjct: 421 IKVE-NITADNAHHNLAKYLQEFLQPGDRVLFKASHSVELNKVVELLI 467


>gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
 gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
          Length = 452

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFTGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A  D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAGAALAMSVGATRDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+   +   +  H+++    L   +++ + +  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAI--GVASGVGEHFADKT-ALIAHLKTLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
 gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
          Length = 431

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 213/437 (48%), Gaps = 21/437 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R I     FFA+KGP++D ++F   A+++GA LVV+  D            F  
Sbjct: 15  GVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVI--DDPKYFIEDDERYFLA 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L  L  LA   R +    II +TGS GKTT+KE+L   L +  KT A +G+ NNHIG
Sbjct: 73  KDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +P D +  I E+G +  G+I  L  +  P    IT I  AHL    G   +  
Sbjct: 133 VPLTLLSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFITNIGRAHLEGMGGPAGVLK 192

Query: 209 AKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+F+ L    GT+F+N  D    +L   +       +Y        DF    + + +
Sbjct: 193 TKTELFQFLRANKGTVFINSQDP---VLSNMAKRFDKPVLY----PAKGDFCEVGFVEAN 245

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              +++  ++G     +   IG +   N+   L +      ++  AI+A+  + P   R 
Sbjct: 246 --PFVKFTVEGTEEVYLSSLIGAYNFGNIANALAVGKYFEVEMKGAIEAIVNYQPSNMRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N     +I ++YNANP+SM+ AI    +++  G+  ++ +LGDM E+GE ++ 
Sbjct: 304 QLLEKRSN----LIILDAYNANPSSMEVAIRTFGEMT--GKKHKMIILGDMFELGEHAEE 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L E++S Y I  V  +G  +++     P++++     +      ++Q S ++  ++
Sbjct: 358 EHAKLGEIISEYEIEKVCFTGKLIVSALARYPKALYFPDPFSFRN---WLQDSQLEDYLI 414

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S       L++ +
Sbjct: 415 LIKGSRGMKLEGLVDFI 431


>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 220/454 (48%), Gaps = 37/454 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S D+R+I     F A+ G ++D HDFI  AV KGA  ++V+  +      ++ P  
Sbjct: 24  VSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVIKGAAALIVSQKL-----QITTPHI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL KL        K   +AITGS GKTT KEMLT  LS   +     G++NN 
Sbjct: 79  LVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKTTVKEMLTSILSQKGQVLFTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + DF + ELG +H+GEI + T LV P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRAKPEDDFAVIELGANHIGEIDYTTRLVNPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSK----NADF 258
             AK EI+ GL+      +N D +    + ++L  K+    +KT+ S   SK      D 
Sbjct: 199 MQAKGEIYNGLKSGAVAVINLDSNGGQYWQDVLADKT----VKTV-SMNDSKADYFATDI 253

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           QL +     E S++     G+ + +    +G H   N L    +     A ++     L+
Sbjct: 254 QLNER---GEASFIMTTPIGECV-IQLSLVGQHNVANALSATSLALEFGASLEDVKSGLN 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +     LN+    LID+SYNA+  +MKAAI +LS       G+R  +LG+M
Sbjct: 310 QLTKVSARAEVIE--LNKQ-IRLIDDSYNASVPAMKAAIDLLSNY----RGKRWLILGNM 362

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+GE S + H  + +  + +   +V   G     + +    S  +H+ +    +  FI+
Sbjct: 363 AELGEESLALHRQVGQHAAPFRFDYVLTYGADAKVISE---ESDGIHFCD-HQSMIDFIK 418

Query: 439 SSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             L         ++VK + S G   ++  + E F
Sbjct: 419 KQLGHEKAQQQTLLVKGALSAGMSVVVKAIKESF 452


>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 205/445 (46%), Gaps = 16/445 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  ++ +S+ I P   F  +K    DGHDFI  A+  GA   +   D   +     IPV
Sbjct: 26  LITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQDAIDHGAQATLWAND--PADAPSEIPV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   A   LA          +IA+TGS GKTTTK+M    LS+    Y   G+YNN
Sbjct: 83  IQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGKTTTKDMTAATLSTTFNVYKTQGNYNN 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +GVP T+  MP D +  + E+GMS  GEIRFL  L    +AVIT I  +H+      E 
Sbjct: 143 QLGVPFTILSMPEDTEVLVVEMGMSGPGEIRFLAQLCPMDVAVITMIGESHIEFLGSREN 202

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI EGL++ GT     D+   +  +A      IK I   G   + D        
Sbjct: 203 IAKAKLEILEGLKEDGTFIYPGDEPLVD--QAVVDMPEIKKI-RVGLDDSEDVYAENIVN 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E +     L   ++E+     G +  +N LM   +       V+     LS F   + 
Sbjct: 260 EREHTHFYTNL-SPNVELSIPVSGDYNVKNALMACAVAYSQGLAVEQIKTPLSQF---KL 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGEL 384
              R    + +    +++++YNANP++M+A I   SQ+  P     ++ VLGDM E+G+ 
Sbjct: 316 TANRSEWLMGKDDIQILNDTYNANPSAMRAVIRNFSQLERPAVTSHKVLVLGDMLELGKY 375

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQS 439
           S S H  +AE +   +I  V+L G  + AL  AL     P     +Y E    L   +  
Sbjct: 376 SASMHASIAEEIDSPHIDGVYLYGKEMQALARALQEKGYPEDKIHYYPEDKAALIKDLLD 435

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            +   D ++VK+S+  G   ++  L
Sbjct: 436 QVQSQDQILVKASHGMGLAEVVAAL 460


>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
 gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
          Length = 455

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 231/473 (48%), Gaps = 29/473 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            L  F ++++AI G  I I       N +S D+R I     F A+KG +++ +D+I+ A 
Sbjct: 2   ELLKFEEIVEAIHG-KIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEAS 60

Query: 62  QKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +KGA L +V+ ++  +   L  +  V  V +   AL  LA   R +    +I ITGS GK
Sbjct: 61  KKGANLCIVD-EIKFNENDLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++   ALSS  K +   G++NN IG+PL +  +    D  + E+GMS   EI  L 
Sbjct: 120 TSTKDLTAAALSSKFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEIHRLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP IA+IT I  +H+ N    E I  AK EI +   +   + +N ++   + + +  
Sbjct: 180 KVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDISSDD 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +      + S G ++   ++              V    K+ +      G H   N L+ 
Sbjct: 240 YK-----VISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLA 294

Query: 300 LGIVSILTADVDT---AIKALSVFHPKEG--RGKRYRCALNQGFFTLIDESYNANPASMK 354
           +    +L  + D     IK LSV   +    +GK+         FT++D+ YNA+P SMK
Sbjct: 295 IAAGRVLNIEYDKLKEGIKNLSVTSMRLDIVKGKK---------FTIVDDCYNASPDSMK 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI V++ I+     R+IAVLG M E+G  S  FH ++AE  +  NI  +   G    A 
Sbjct: 346 AAIDVMNTITGK---RKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGEFNEAY 402

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           K+   +  +    ET++    F  +++   D+++VK+S S  F  ++N L ++
Sbjct: 403 KEGFNK--NSKQFETIEDAAEFTTNNINKDDIILVKASRSMKFEYIVNKLKDK 453


>gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 222/471 (47%), Gaps = 34/471 (7%)

Query: 13  AIQGHSI-GIV--PQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           A   H++ G+V  P G +  N +  DSR++ P   F A++G  +D HDF+     +GA  
Sbjct: 19  AASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAA 78

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           VVV          L++P   V D   AL ++A   R++ +  +I +TGS GKTT KEM+ 
Sbjct: 79  VVVER----VPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIA 134

Query: 128 IALSSI--KKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             L++   ++ Y    G++NN IGVPLTL R+       + E+GM+H GEI  L+ +  P
Sbjct: 135 TILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + ++      H    + +E +A     +   L   G      DD F  L + ++   G 
Sbjct: 195 TLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDDFTPLWREEA---GA 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299
           + + SFG S  AD     ++  +  S ++V ++G        +V    +G H  +N L  
Sbjct: 252 RRVLSFGLSAQADVSA-SYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAA 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                     ++  ++ L  F P  GR +R      +    +ID++YNANP S++AAI V
Sbjct: 311 AACALGAGIAIEAVVRGLESFAPVNGRLQRKEA---RSGALVIDDTYNANPDSVRAAIDV 367

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKD 416
           L+ I+    G R+ VLGDM E+G+    FH ++        I   +  G    H +    
Sbjct: 368 LAAIA----GPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVTAYG 423

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           A P+ +   +H+ + +  L   ++ +   G  V+VK S      R++  L+
Sbjct: 424 ATPQGVAQALHFDD-IAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLV 473


>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
 gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
          Length = 462

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 220/471 (46%), Gaps = 33/471 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGAS 65

Query: 67  LVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           L +V   N D    IG  S  V  V+    AL  LA   + +    ++AITGS GKT+TK
Sbjct: 66  LCIVSEINFDK-EKIGKSSY-VIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +
Sbjct: 124 DLVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    E I  AK E+ +   K   + +N D+      ++  +   
Sbjct: 184 PDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLSNFESDKYK-- 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLM 298
              +   G  K  DF         E    +V  QG   E  + G      G H   N L 
Sbjct: 242 ---VCKIGTEKKFDFNGENLNLEEESIEFDVLEQG---ETAYKGFNVNVPGKHNVLNSLT 295

Query: 299 TLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    +L     D+ T IK L      +    R      +G FT+I++ YNA+P SMKA
Sbjct: 296 AIACGKVLDMNYEDIQTGIKNL------KATSMRLDIIKEKG-FTIINDCYNASPDSMKA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI V+  +      R IA+LG M E+G      H +++E      I  ++  G    A K
Sbjct: 349 AIDVMKNVKGK---RTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYK 405

Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        +Y   ++      +I++ + DGD+++VK+S +     ++  L
Sbjct: 406 EGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILVKASRAMKLEEIVKEL 456


>gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
 gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
          Length = 456

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 179/369 (48%), Gaps = 22/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+IA  + F A+ GP +DGHD++     KGA   +V  +    + +  +P   V 
Sbjct: 28  VGTDSRTIAADQLFVALNGPRFDGHDYLAEVAAKGAVAALVERE----VANAPLPQLLVA 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHI 147
           D   AL +L    R   K ++ A+TGS GKT+ KEML   L +       A  G+ NN +
Sbjct: 84  DTRVALGQLGALNRQAFKGSLAAVTGSSGKTSVKEMLASILRAGLNGAVLATRGNLNNDL 143

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL  +  +   G+ ELG +H+GEI +   L +P +A+IT    AH+  F G E+I 
Sbjct: 144 GAPLTLLELVPEHRAGVIELGANHVGEIAYTVSLTQPQVAIITNAGNAHVGEFGGPEKIV 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKW 263
            AK EI EGL   G   LN DD  F  +  +  A G K +    +   ADF      R  
Sbjct: 204 EAKGEILEGLPSDGVAVLNLDDKAF--VTWQRRAAGRKVLSFALRDTRADFHGSDLARDE 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           + C  Q +      G S  +  + +G H   N L        L   +   ++ L    P 
Sbjct: 262 RGC--QGFTLRSPIG-SARIQLNLLGEHNVANALAACAAAHALGMPLVAMVQGLESLQPV 318

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR       L      +ID+SYNANP SM AA+ +L+  S    GR + VLGDM E+GE
Sbjct: 319 KGRAV---AQLAPNGVRVIDDSYNANPVSMCAAVDILAGFS----GRTVLVLGDMGELGE 371

Query: 384 LSQSFHIDL 392
            ++  H D+
Sbjct: 372 WAEQGHRDV 380


>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
 gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
          Length = 483

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 133/400 (33%), Positives = 189/400 (47%), Gaps = 46/400 (11%)

Query: 22  VPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------- 70
           +P  + N     +  DSR + P   F A+ G   DGH F+   V +GA   +V       
Sbjct: 8   LPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTA 67

Query: 71  ---NTDMVASIGSLSIP---------------VFGVDDVLGALNKLAVAARLRSKATIIA 112
              N D VA    L  P               +  VDD L AL ++AV  R     T+I 
Sbjct: 68  LASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMFTPTVIG 127

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKT+TKE++    S   +T     S+N+ + +P TL  +  D    + E+GM   
Sbjct: 128 ITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAA 187

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEIRFL  L RP I ++T + P+HL     IE IA+AKAE+ E L   G   LN DD   
Sbjct: 188 GEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRV 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVHHGIG 289
             + +++ A     + ++G + NAD +L      S   +   + V  +G+S  +    IG
Sbjct: 248 AAMASRTAA----RVLTYGYAPNADVRL--LDVVSHGLYGIELTVGYEGQSHRLTTPLIG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A   L  +    +L  D D   + L     + G   R R    Q   T+ID++YNA 
Sbjct: 302 RHHAYTALAAIAAGLVLGLDWDAIAEGLR----EPGEQLRLRIVPGQHGTTIIDDTYNAA 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           P S  AA+ VL++     +GRRIAVLG+M E+G  S   H
Sbjct: 358 PLSTIAALQVLAET----KGRRIAVLGEMLELGAASVEGH 393


>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
 gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
          Length = 459

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 29/458 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++L+A+ G  +      +  G++ D+R+I+P E F A++G  +DGH F+  A   G
Sbjct: 4   FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACING 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V+++          ++ V  V +   AL  LA   R++    ++A+TGS GKTTTK 
Sbjct: 64  ASMVIISERSSFKAVPRTVSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKN 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   ++S     A   ++NN IG+ LTL  M  + +  + E+GM  LG+I  L  +  P
Sbjct: 124 MIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQIAELCRIAAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V+T +  +H+      E IA AK E+ E L   G   LN DD +  +++      G 
Sbjct: 184 TIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPY--VIRMGDTFSG- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  +G + N      + +  +  +        ++ +V  + +G H   N L       
Sbjct: 241 -NIIGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  DV+   KALS F P  G  +++   +N    T+ID+SYNANP SM+ A   + Q++
Sbjct: 300 VLGIDVNRIQKALSEFLP--GAQRQFFTEING--VTVIDDSYNANPLSMEMAFHAMRQVN 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                    VLGDM E+GE  + FH +L ++ +  NI      GF  +     L R I  
Sbjct: 356 GK---HYFLVLGDMGELGEKEEQFHYELGKIAA--NI------GFDGMITVGKLSRHIAM 404

Query: 423 --------HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   ++    T +  +  +Q  +  GDVV+VK S
Sbjct: 405 GARDAGKTNIMECTTCEDAWQRLQKMIQSGDVVLVKGS 442


>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
 gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
          Length = 463

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 187/384 (48%), Gaps = 46/384 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R+I   E F AIKGP++DGH F+  AV +GA  V+V+  +      + +P F V 
Sbjct: 27  INTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVAQGAVAVIVDHSV-----KVQVPQFIVP 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL KL  A         IAITGSVGKTT KEM    LS   +  A  G++NN IGV
Sbjct: 82  DARLALGKLGAAVMAEVNPKTIAITGSVGKTTVKEMCAAILSQHGEVLATKGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     + + ELG +H+GEI + T LV+P +AV+  +A AH+  F  ++ +A A
Sbjct: 142 PLTLLRLEPKHQYAVIELGANHIGEIAYTTDLVKPDVAVVCNVAAAHIEGFGSLDGVAQA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265
           K EIF GL+  G   +N D  + +       +L   T+  F  S+    QL  W +    
Sbjct: 202 KGEIFSGLKAGGIAVINADSPYVDYWLT---SLDKSTLCQFSMSQ----QLDVWPENIHL 254

Query: 266 ----------CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                     C+    + VQL            G H   N L+   +   L   +    +
Sbjct: 255 DKLGRAGFDLCTPTERIAVQLPIA---------GKHNITNALIACALTLPLGVTLAHVAQ 305

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+     +GR             T+ID++YNAN  S+KA I +L QI    EG +I   
Sbjct: 306 GLASMPMVQGRVNLIEV---NDSLTVIDDTYNANVQSVKAGIDLLGQI----EGHQIFAF 358

Query: 376 GDMCEMGELSQSFHIDLAEVLSLY 399
           GDM E+G  ++ +H    E + LY
Sbjct: 359 GDMGELGADARQYH----EEVGLY 378


>gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 192/394 (48%), Gaps = 28/394 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF++L QA+    +        +G+SIDSR+I P + F A+ GP +DGHD++     KGA
Sbjct: 6   TFNELAQALSARVLS--SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDVAAKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V  ++  S    ++P   V D   AL +L    R      + AITGS GKTT KE+
Sbjct: 64  VGALVQREVADS----ALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKEL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L +     A  G+ NN  G PLTL  +  +    + ELG S +GEI +   L +PH
Sbjct: 120 LAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRIGEIAYTVALTKPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+I     AH+  F G E+I  AK EI EGL+ +GT  LN DD  FE  + +  A G K
Sbjct: 180 VAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRVR--AAGRK 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVS 304
            +     +  ADF           S + V  +G     +H   G  H+  N+L    + +
Sbjct: 238 VLTFAVLNAAADFH---------ASNITVDARGCPSFTLHSPQGSEHVQLNLLGNHNVAN 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGK------RYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L A        +S+F    G G       R    L      +ID++YNAN +S+ AAI 
Sbjct: 289 ALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSVCAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +L       + R++ VLGD+ E+G+ ++  H ++
Sbjct: 349 LLKGF----DTRKVLVLGDIAELGDWAEQSHREV 378


>gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
 gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
          Length = 468

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 200/421 (47%), Gaps = 31/421 (7%)

Query: 5   WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L++A QG+      P+  +  I  DSR     +AF A+KG  +D HDF+   + K
Sbjct: 14  WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDK 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V   +      L +    V D   AL +L    R ++ +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  +  AHL  F G E I  AK+EI+  + K GT  +   D F + ++   HA+
Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG  +  D    +    ++ +   +       EV     G H  QN       
Sbjct: 246 QTTRVLSFG--EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAI 357
              +   +D  +  L +    +GR       LN     Q  F  ID++YNANP SM+AA 
Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGR-------LNFISHKQHLF--IDDTYNANPTSMRAAG 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKD 416
            VL+Q S    G ++ V GD+ E+G+ +   H  L   L   +I+ V   G F   AL+ 
Sbjct: 355 EVLAQQS----GIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFVVTIGEFAPAALEG 410

Query: 417 A 417
           A
Sbjct: 411 A 411


>gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae Sd197]
 gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
 gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
          Length = 452

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ +        I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EACHVQVGGAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
 gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
          Length = 466

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 225/457 (49%), Gaps = 25/457 (5%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P   + G+  DSR+IAP + F A+KG ++DGHDF+  A+Q GA   +V      +  
Sbjct: 19  GQAPAQAMAGVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAALVERGFNPTAA 78

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +    VDD   AL +LA A R    A I+A+TGS GKT+TKEM+   L    + +  
Sbjct: 79  GQCL--LRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQRFEVHKT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NNHIG+PLTL  +  +    + E+GM+  GEI +L  + RP +AVIT + PAHL  
Sbjct: 137 KGNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVITNVGPAHLGP 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              IE +A+AKAE+F+ L       +N DD    LL   +  L  + I +FG    A  +
Sbjct: 197 LGSIEAVAAAKAELFQALGPEAVAAVNLDDP---LLAPWADKLPCRVI-TFGLDPKAQAR 252

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            R       +    +++  +  E V     G H  +N L    + + L  +       + 
Sbjct: 253 ARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVGAGLGLEAWQIKDGVE 312

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F P +G   R      +G   LID++YNANPAS+ A +  L+ +S  G+G  + ++GDM
Sbjct: 313 AFTPTKG---RLENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGKGHGL-IMGDM 368

Query: 379 CEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            E+G  +   H  +           VL++  ++   ++G     L  A P+++   ++E 
Sbjct: 369 GELGPEAPRLHRQVGRQAVEFGCKFVLAVGQMADEVVAGAREAGL--AAPKAL--AFAE- 423

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +D L       + +G  V+VK S +    R+I  L E
Sbjct: 424 VDQLIDASPRVIGEGWTVLVKGSRAARMERVIQRLQE 460


>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
 gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 206/444 (46%), Gaps = 19/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G S DSR ++P   +  I G  +DGHDFI +A + GA  V+   D+  S       + 
Sbjct: 23  ITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENGASAVISGRDIDDS----EHIII 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL  +A   R   K  ++ ITGSVGKT+T++M+   +    KT    G+YNN 
Sbjct: 79  KVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVIKQQYKTLKTEGNYNNA 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R+  D    + E+GM+HL E+  L+ +  P I+ IT +  AH+      E I
Sbjct: 139 IGLPLTILRLK-DEQVMVLEMGMNHLKEMEELSMIACPDISAITNVGTAHIGELGSRENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EI  G+     + +N D+     ++     +G   +   G     DF+       
Sbjct: 198 LKAKMEIINGMSDNSMLVINNDNDMLSTVE-----VGRLNLIRVGIDNGVDFKANNVVLS 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E S    + +GK   V     G H   N L+ + I   L    +  IK +  F     R
Sbjct: 253 DEGSTFNFEYKGKVYFVDVPVPGKHFVMNALIAIAIGLQLDISPEQCIKGVKEFELTRNR 312

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                   N    TLID +YNA+  SMK++I VL+  +     R+IAVL DM E+G+ S+
Sbjct: 313 MDIVELKNN---ITLIDGTYNASEDSMKSSIDVLATYTR----RKIAVLADMLELGKYSE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDG 444
             H ++   ++   I  +   G     + DA  ++    + Y  + + +  ++   +   
Sbjct: 366 QLHRNIGMYVAKNKIDILVAVGKESKYIIDAASKAGVKQICYCNSNEEVINYLGKIIQSN 425

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
           DV++ K SN      ++ L+ E+ 
Sbjct: 426 DVILFKGSNGMKLGNVVALMKEKL 449


>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 466

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 212/457 (46%), Gaps = 54/457 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ D+R++ P + F A++G  +DGHD+   A++KGA  V+ N D    +    IP  
Sbjct: 30  VYGITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRDQGYHLQD--IPQL 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  +LA   R +    +IA+TGS GKTTTKE++   LS+         +YNN 
Sbjct: 88  QVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELIAAVLSTQGNILKTQANYNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL  +  + D+ + E+ M   G+I  LT + RP I VIT +  AH+      + I
Sbjct: 148 IGVPKTLLELDSNHDYAVIEMAMRGSGQIALLTQIARPTIGVITNVGTAHIGLLGSEDAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+   +  T    LN+D+              + T  +  + +   F L      
Sbjct: 208 AKAKCELLAQMPDTSMAILNHDNQRL-----------MDTAATVWQGETLTFGLNGGD-- 254

Query: 267 SEQSWMEVQLQGKSMEVVH---HGI-------GYHMAQNMLMTLGIVSILTADVDTAIKA 316
                    +QGK +++      GI       G H A N L  L +   L  D     K 
Sbjct: 255 ---------VQGKLIDLFRLMVDGITFPLPLPGEHNALNYLAALAVAKHLQIDWTPLRKG 305

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           LSV     GR +RY    +     ++DE+YNA   +M AA+ +L+Q       R IA+LG
Sbjct: 306 LSV-QMSGGRSQRYELPND---IVILDETYNAGFEAMIAALHLLAQTPGK---RHIAILG 358

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----ALPRSIHVHYSETM-- 430
            M E+G+ S+  H  + +      +  V+++      LKD    A+ R I    SE    
Sbjct: 359 SMKELGDHSEQLHQQVGQKAQQLQLDAVFIT------LKDREAEAITRGISALPSEGFAE 412

Query: 431 -DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            D L   +   +  GD ++ K+S S G  R+++   E
Sbjct: 413 DDALVQHLTEFVQPGDRLLFKASRSVGLDRVLHQFRE 449


>gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 454

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 210/449 (46%), Gaps = 35/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +   P  
Sbjct: 29  IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVAGHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A   LA     + +  +IA+TGS GKTTTK+M+   LS+  KTY   G+YNN 
Sbjct: 79  WVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +PHI V+T I  AHL  F   E+I
Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I +   D+  +    +S     + +  FG    A+  ++  ++ 
Sbjct: 199 AEGKLQIVDGMDSDG-ILIAPADTIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E       +  + + +     G + A N ++   +  +L    D  ++AL        R
Sbjct: 251 KESLTFTTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   S+I  +  G++IAVL DM E+GE S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437
             H  +   LS   +  +   G  +  L     +      V+Y       +  D +   +
Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           Q  L   D +++K SNS    +++  L E
Sbjct: 426 QKVLQPADQILLKGSNSMQLAKVVEALEE 454


>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
          Length = 460

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 228/457 (49%), Gaps = 55/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I   + DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNMKEGNLFVPIIRMN-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 83  PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               EEIA AK EI +GL   G    N D+    LL    + LGI++    GK  N  F 
Sbjct: 203 LGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLGIESKSFGGKYTNDLFP 259

Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307
                         VQL   G   ++ H  I Y    H   N+  T+ GI       + T
Sbjct: 260 TN------------VQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 307

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++ +++         R++    +  FT+I++++NANP+SMKAAI  L +++ + 
Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKLNAY- 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H    
Sbjct: 361 -KKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYHAGKV 419

Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           ++ D      +  L      DVV++K S       ++
Sbjct: 420 QSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIV 456


>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
 gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 221/454 (48%), Gaps = 21/454 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A+ G  +    +  +  ISIDSR++   + F  + G   D H F+  A + GA 
Sbjct: 6   IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +       G ++  +  V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  ASLTSEHDTCPEG-ITGALIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  +T+    ++N+ +GVP+T++ +    + G+ ELGMS  GE+  +  + R   
Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEVIADIARVDT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+ N    E I   K  I +G++K GT+FLN D+     ++AK    G +T
Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD---GCET 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + +G   N  ++         +   ++      + VV   +G H   N L  L +    
Sbjct: 242 SF-YGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A +AL  F   + R + Y     +G  T+ID++YNA+P SMKA I VL+ ++  
Sbjct: 301 HVPLADAAEALKTFDGFKNRQQIY----EKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              RRIAVL DM E+GE +  FH ++   L    +  V   G    AL   + R +    
Sbjct: 357 --KRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYG----ALAKEIARGVEGKV 410

Query: 427 SETM------DGLFLFIQSSLVDGDVVVVKSSNS 454
             T+      + +  +++  L +GD V+ K SNS
Sbjct: 411 KTTVFEEEQKEEMTEYLEKLLREGDAVLFKGSNS 444


>gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 452

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 212/443 (47%), Gaps = 25/443 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R  A    F A+KG  +D HDF+  A+  G   ++V+  +      + +P   V 
Sbjct: 27  VTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVSKRL-----PVELPQVVVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +S A I+A+TGS GKT+ KEM    L    +T    G++NN IGV
Sbjct: 82  DTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTAAILRECGETLYTTGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +  + + ELG +H GEI + + LVRP  A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLKPEHRYAVIELGANHQGEIAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268
           K EIF GL   GT  +N D + +   +   HA   KTI+ F   + ++DF        ++
Sbjct: 202 KGEIFSGLPLNGTAIINSDSNDWPHWQQALHA---KTIWRFSPEQADSDFYAANVTISAQ 258

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +      ++V+    G H   N L    +   + A +    + LS      GR  
Sbjct: 259 GTHFTLHSPQGDVDVILPLPGRHNIANALAASALALSVGAPLSAVRQGLSTLKAVPGR-- 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +  AL+     L+D+SYNAN  SM AA  VL+ +     G R+ ++GDM EMG  +   
Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGMP----GYRVMIVGDMAEMGAEAAEC 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444
           H  +   +    I  V  +G     + DA    +  H+++        L L  Q   +  
Sbjct: 372 HRQVGNAIRHAGIDKVLSTGSLSHGISDA--SGVGEHFADKAALGARALELLAQHQHI-- 427

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
             ++VK S S    +++ +L E+
Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449


>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
 gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
          Length = 455

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 234/477 (49%), Gaps = 43/477 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            L  F ++++AI G  I I       N +S D+R I     F A+KG +++ +++I+ A 
Sbjct: 2   ELLKFEEIVEAIHG-KIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEAS 60

Query: 62  QKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +KGA L +V+ ++  + G L  +  V  V++   AL  LA   R +    II ITGS GK
Sbjct: 61  KKGANLCIVD-EIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++   AL S  K +   G++NN IG+PL +  +   +D  + E+GMS   EI  L 
Sbjct: 120 TSTKDLTAAALGSKFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGMSDFSEIHRLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP IA+IT I  +H+ N    E I  AK EI +   K   + +N ++   + + +  
Sbjct: 180 KVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNENDLLKDISSND 239

Query: 240 HALGIKTIYSFGKSKNA-----DFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + + I   ++ G +  A     D    ++  C   E     + + GK           H 
Sbjct: 240 YNI-INIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGK-----------HN 287

Query: 293 AQNMLMTLGIVSILTADVDT---AIKALSVFHPKEG--RGKRYRCALNQGFFTLIDESYN 347
             N L+ +    +L  + D     IK LSV   +    +G++         FT++D+ YN
Sbjct: 288 ILNSLLAIAAGRVLNIEYDKLKDGIKNLSVTSMRLDIVKGEK---------FTIVDDCYN 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P SM+AAI V++ I      R+IAVLG M E+G  S  FH ++AE     N+  +   
Sbjct: 339 ASPDSMRAAIDVMNTIKGK---RKIAVLGTMKELGVDSYKFHKEVAEYADSKNVDLLITV 395

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G    A K+   ++      ET++    FI +++   D+V+VK+S S  F  ++N L
Sbjct: 396 GEFNEAYKEGFNKT--SKQFETIEDAAEFITNNINKDDIVLVKASRSMKFEYIVNKL 450


>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
 gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
          Length = 497

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/418 (32%), Positives = 195/418 (46%), Gaps = 49/418 (11%)

Query: 7   FHDLLQAIQGHSIG---IVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             +LL  +Q   I     +P  + N     +  DSR + P   F A+ G   DGH F+  
Sbjct: 4   LDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLAD 63

Query: 60  AVQKGAGLVVV----------NTDMVASIGSLSIP---------------VFGVDDVLGA 94
            V +GA   +V          N D VA    L  P               +  VDD L A
Sbjct: 64  VVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFA 123

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++AV  R     T+I ITGSVGKT+TKE++    S   +T     S+N+ + +P TL 
Sbjct: 124 LQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLL 183

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D    + E+GM   GEIRFL  L RP I ++T + P+HL     IE IA+AKAE+ 
Sbjct: 184 GLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELP 243

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--- 271
           E L   G   LN DD     + +++ A     + ++G + NAD +L      S   +   
Sbjct: 244 ESLPADGWCILNADDHRVAAMASRTAA----RVLTYGYAPNADVRL--LDVVSHGLYGIE 297

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + V  +G+S  +    IG H A   L  +    +L  D D   + L     + G   R R
Sbjct: 298 LTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLR----EPGEQLRLR 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               Q   T+ID++YNA P S  AA+ VL++     +GRRIAVLG+M E+G  S   H
Sbjct: 354 IVPGQHGTTIIDDTYNAAPLSTIAALQVLAET----KGRRIAVLGEMLELGAASVEGH 407


>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
 gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
          Length = 451

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 220/452 (48%), Gaps = 39/452 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           +NG++IDSR I     F   KG + DGH F+  A++ GAG       T++   I     P
Sbjct: 26  INGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELSEDIEG---P 82

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V+D L AL  LA A        +IA+TGS GKTTTK+M+   L++  K     G+YN
Sbjct: 83  IIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLTTEFKVKKTQGNYN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PLT+  +  D +  I E+GMS   EI  L+ + +P IAVIT I  +H+ +    E
Sbjct: 143 NEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPDIAVITNIGESHMQDLGSRE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+EI  GL++ GT   + D+    LLK     L    + S G   +         
Sbjct: 203 GIAKAKSEITIGLKENGTFIYDGDEP---LLKPHLEQLNKARLISVGLGNSNTL------ 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            C      +++ +G +  +          +G H  +N  + + I   L    +T    ++
Sbjct: 254 VCHVD---DIETEGIAFTINDKESFTLPILGTHNMKNATIAIAIGHELGLSYETIKDNIN 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +R++   N    T+I+++YNA+P SMKAAI  LS +    EGR+I +L D+
Sbjct: 311 HVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM----EGRKILILADV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHV-HYSETMDGL 433
            E+GE SQS H ++   L+   I  ++  G     +    ++ +P + H    SE +  L
Sbjct: 364 LELGENSQSMHEEVGAYLNNKAIDVLYTYGDEARFIFNIGQNEVPTAQHFDDKSELIKEL 423

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + ++    + D ++VK S       ++  L+
Sbjct: 424 KIIVK----ENDKILVKGSRGMKLEEVVEALI 451


>gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
 gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
          Length = 491

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 216/470 (45%), Gaps = 52/470 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I P   V     DSR       + A  G   DGHDFI  A ++GA L +V  +     G+
Sbjct: 23  ITPSAVVT----DSREATEGSLYVAKPGESADGHDFIGAAFERGAVLALVEREGPDGAGA 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLR---------SKATIIAITGSVGKTTTKEMLTIALS 131
              P   V D + A+  LA  +  R         ++ T+I ITGS GKTTTK++L   LS
Sbjct: 79  -PYPAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFTVIGITGSAGKTTTKDLLAGILS 137

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +   T +  GSYN  +GVPLT+ +   D  + + E+G + +G IR+L  +VRP I V+  
Sbjct: 138 AEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGATGIGHIRYLADMVRPSIGVVLG 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I  AH   F G++ IA AK E+ E L  +GT  +N DD     + +++ A     +  F 
Sbjct: 198 IGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDDGRVAAMTSRTTA----NVLGFS 253

Query: 252 KSKNADFQLRKWK----QCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                D      +    + +     E +L    + +  +V    IG H   N+L   G  
Sbjct: 254 AQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRSRLIGAHHVTNLLAAAGAA 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    +LS       R +  R     G  T+I+++YNANP SM+AA+  L+ +
Sbjct: 314 YAAGVTGERIAASLST-QTAASRWRMERTERPDG-VTIINDAYNANPESMRAALRTLADL 371

Query: 364 SPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
              G GRR  AVLG M E+G+ S   H+ +   +   NIS + + G           RS+
Sbjct: 372 ---GRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNISRLVVVGREA--------RSL 420

Query: 423 HVH------------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +V             ++E+ D  +  +Q  L  GD+V+ KSSNS G   L
Sbjct: 421 YVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVLFKSSNSVGLRHL 470


>gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
 gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
          Length = 453

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 213/445 (47%), Gaps = 19/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  ISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEHELDADCSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + K   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  IE +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL +     +N D +  E  K     L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKT---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S+  V   G+ ++V    IG H   N L    +   + A +      L+     
Sbjct: 256 NALGVASFTLVTPIGE-VDVELGIIGQHNVANALAAAALSLEMGASLAEIAHGLAHLSKV 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR         +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+G+
Sbjct: 315 KGRVDLTHL---RDDITLIDDSYNASVPAMKAAVDLLGSFS----AVRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + ++   V   G     + D         + + M  +   I+     
Sbjct: 368 ESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGR 427

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
             V++VK +NS G  ++   L E+F
Sbjct: 428 AQVLLVKGANSAGMSKIAAALKEKF 452


>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
 gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
          Length = 467

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 220/456 (48%), Gaps = 49/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R++ P EAF A++G  +DGH F+  A+ +GA   +V+ D  A   + ++P+ 
Sbjct: 30  VIAITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQGAVCAIVDADFTAD--NPNLPLL 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A   +A   R +    II +TGSVGKTTTKE++   L +    +    +YNN 
Sbjct: 88  TVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTKELIAAVLGTQGNVHKTQANYNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL ++    ++ + E+ M   GEI  LT + RP I +IT +  AH+      + I
Sbjct: 148 IGVPKTLLQLNSHHNYAVIEMAMRARGEIALLTQIARPTIGLITNVGTAHIGRLGSEQAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+   + +     LN D     L+   +     +T+ ++G  +  D Q       
Sbjct: 208 AEAKCELLAEMPQNSVAVLNCD--HHRLMDTAATVWSGETL-TYGL-EGGDLQGELIDAH 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT------ADVDTAIK-ALSV 319
           +        L+ + +++     GYH A N L  L +  I+        ++ T ++  LSV
Sbjct: 264 T--------LRVEGLDLPLPLPGYHNASNFLAALAVFKIIQGQGLSPTELYTPLQTGLSV 315

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P EGR KRY  + +     ++DE+YNA   SM AA+ +L +       R IAVLG M 
Sbjct: 316 QLP-EGRAKRYELSND---IVILDETYNAGLESMIAALKLLMETPGQ---RFIAVLGTMK 368

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHVH 425
           E+GE S  FH  + ++    N+  +++               G  V+ +      +IH  
Sbjct: 369 ELGERSLEFHQKVGKMAQELNLDALFILADAEEAIAMATGAKGLSVVEIGKMEVENIHNQ 428

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +E    L  FIQ     GD ++ K+S+S   YR++
Sbjct: 429 IAEQ---LIEFIQP----GDRILFKASHSVELYRVV 457


>gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 436

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 201/399 (50%), Gaps = 29/399 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + + G  + +V    +N   IDSR +   + F  +KG + DGH +I  A++KGA    
Sbjct: 6   LKKIVNGEFLNLVKNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYF 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
               +    G L      V D   AL ++    R + +  +I ITG+ GKT+TKE++   
Sbjct: 66  SEKPLNFKNGIL------VKDTYQALVEVGKHKRNQVRV-VIGITGTSGKTSTKELMNFV 118

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS++  TYA  G+YNN IGVPLTLA +P   DF I E+G   +G+I +L  +V   I+V+
Sbjct: 119 LSNLASTYATQGNYNNEIGVPLTLANIPESTDFAIIEMGAGKVGDIDYLGKIVNQDISVL 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++   H+  F   E +   K EIF      G    NY     EL K  +     K   +
Sbjct: 179 VSVGHGHVEKFGSFENVIKGKGEIFN----CG----NYSVLPSELKKFYNP----KNPIT 226

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G  ++ D +++  K   + +   ++ +   +E+        + +N+    G++  L  D
Sbjct: 227 YG--EDGDIEIKDIKIVKDGTVGIIKYKNDKIELKIPVYNIGVFKNIGAVAGVLYHLGYD 284

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
               ++ L  F     RG+  +     G FT+ID+SYNANP S+K AI +L+ +    EG
Sbjct: 285 PIKNLEVLKDFKSSSQRGEIIKI----GNFTIIDDSYNANPLSVKNAIEILNSM----EG 336

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            +I VLGDM E+GE SQ  H ++ ++L+   I ++ L G
Sbjct: 337 FKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYG 375


>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 465

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 223/452 (49%), Gaps = 20/452 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
           P     G SIDSR++A  + FFA+KG  +DGHDF+  A+ +GA   VV+    A +  L 
Sbjct: 21  PARPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRGAVGAVVSRARAAELLPLI 80

Query: 82  -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               +  VDD L AL +LA A R      ++ +TGS GKTTTKE +   L +  +     
Sbjct: 81  DHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTKEAIAAVLGAGYRVLKSQ 140

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN+ G+PL L R+  + +  + E+GM+H GEI  L  +  P   V+T +  AH+ NF
Sbjct: 141 GNLNNNFGLPLQLLRLDTEDEIAVIEMGMNHAGEITALARIAMPDWGVVTNVGKAHVENF 200

Query: 201 S-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           + GI  +A AK E+ + L   G  FLN DD++        H      +  FG+   A  +
Sbjct: 201 TDGIAGVARAKYELVQALPAEGIAFLNCDDAYVSQFGRDFHG----RVILFGRGPCAHLR 256

Query: 260 LRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           + + +   +E + + V  +G+   +  H +G H   N L  L +       ++   +AL 
Sbjct: 257 VEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAALAVGLAAEIPLEIGARALE 316

Query: 319 VFHPKEGRGK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                E RG+   +R A      +++++ YN+NP ++KA I+ L  +  +   R I V G
Sbjct: 317 SLRADEKRGQIIPWRGA------SIVNDCYNSNPEALKAMIATLMGMPGN---RHILVAG 367

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           +M E+G  + + H    E  +   +   V + G     +  A        Y ET +   +
Sbjct: 368 EMLELGAEAPALHAACGEAAAAAKVDIVVGVRGAASQIVDAARRAGADAVYVETPEDAGI 427

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +++++L +GD V++K+S      R +++L  E
Sbjct: 428 WLKANLREGDAVLLKASRGVRLERALDVLQAE 459


>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium cellulovorans 743B]
          Length = 395

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 197/395 (49%), Gaps = 29/395 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A +G+ I   P+   N +SID+R +     + AIKG ++DG+DF++ A+ KGA
Sbjct: 5   TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64

Query: 66  GLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L +++         L+   +  V++   AL +LA   R +    +I +TGS GKT+TK+
Sbjct: 65  ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  ALS   K +   G++NN IG+PL +  +    D  + E+GMS L EI+ L+ + RP
Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+ N    E I  AK EI     K   + +N+DD +   +    + L I
Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-I 243

Query: 245 KTIYSFGKSKNADFQ----LRKWKQCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K   S    KN D +    + K   C     +S   + + GK           H   N L
Sbjct: 244 KA--SISDDKNIDLKGESLVLKEDSCEFKLNESKFYIPMPGK-----------HNISNAL 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + +     L  +     K    F   E    R     N+G  T+I+++YNA+P SMKAAI
Sbjct: 291 LAIACARELGVEDQLINKG---FLNIEATSMRLDIEKNKG-ITIINDTYNASPDSMKAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            V+  +      RRIAV+G M E+GE S  +H ++
Sbjct: 347 EVMKNLKGK---RRIAVVGTMKELGENSFEYHKEM 378


>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
 gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
          Length = 455

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 221/454 (48%), Gaps = 21/454 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A+ G  +    +  +  ISIDSR++   + F  + G   D H F+  A + GA 
Sbjct: 6   IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +       G ++  +  V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  ASLTSEHDTCPEG-ITGALIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  +T+    ++N+ +GVP+T++ +    + G+ ELGMS  GE+  +  + R   
Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEVIADIARVDT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+ N    E I   K  I +G++K GT+FLN D+     ++AK    G +T
Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD---GCET 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + +G   N  ++         +   ++      + VV   +G H   N L  L +    
Sbjct: 242 SF-YGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A +AL  F   + R + Y     +G  T+ID++YNA+P SMKA I VL+ ++  
Sbjct: 301 HVPLADAAEALKTFDGFKNRQQIY----EKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              RRIAVL DM E+GE +  FH ++   L    +  V   G    AL   + R +    
Sbjct: 357 --KRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYG----ALAKEIARGVEGKV 410

Query: 427 SETM------DGLFLFIQSSLVDGDVVVVKSSNS 454
             T+      + +  +++  L +GD V+ K SNS
Sbjct: 411 KTTVFEEEQKEEMTEYLEKLLREGDAVLFKGSNS 444


>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 420

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 215/447 (48%), Gaps = 50/447 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  DSR +   + FFA+KG +++G+ F   A++ GA  +V++ +++ ++   +  VF V
Sbjct: 13  GICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLD-EIIENLNYNNSDVFFV 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +VL  L   A   R +   TII ITGS GKTT KE+L   LS    T+A  G+YNNHIG
Sbjct: 72  KNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGNYNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +    D  I E+G +H+GEI+ L  +  P    IT    AHL  F GIE +  
Sbjct: 132 VPLTLLNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYITNFGLAHLEGFGGIEGVIK 191

Query: 209 AKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADFQLRKW 263
            K+E++E L+K  +I F+N +DS   L    S  +    G+   Y  G            
Sbjct: 192 GKSELYEHLDKNNSISFVNPNDS-IALKNCNSQNIEFTDGVNFFYKSG------------ 238

Query: 264 KQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                       L G S    E++ +  G +   N+L  + I      +     K ++ +
Sbjct: 239 ------------LLGVSFGNEEILTNLTGSYQENNVLAAITIGRNFELEDSKIAKGIANY 286

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---VLSQISPHGEGRRIAVLGD 377
            P+  RG+ ++   N    T+  ++YNANP SM+A++     L +  PH     + + G 
Sbjct: 287 IPQNNRGQIFKTGKN----TIFLDAYNANPTSMEASLRNAVNLYKKMPH-----VYIAGG 337

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           + E+GE S+S H  + E+     I + W  G      +  +P   + +Y +T   L   +
Sbjct: 338 LLELGEYSKSQHQRMIEIFQELEIENAWFIGKQF--EESQMPEK-YYNYRDTAQALEA-L 393

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   + G+ + +K S S     L++ L
Sbjct: 394 RGKQIHGNFIWIKGSRSFALEALLDEL 420


>gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 455

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 216/447 (48%), Gaps = 31/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   DGH+FI  A Q GA       ++         P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  KLA     + +  +IA+TGS GKT+TK+M++  LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++IA  
Sbjct: 142 PYTVLHMPNDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G++  G I +   DS  +    ++     + +  FG  +  +    + ++ S  
Sbjct: 202 KMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFGDHQELNVTDIREEKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I+AL        R + 
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTE- 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G  S + H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDGLFLFIQS 439
             L + LS   I  +   G  +  L     +  P   HV +       +  + +   +Q 
Sbjct: 369 SQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFEDMVRQVQQ 427

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L   D +++K SNS G  +L+N L+E
Sbjct: 428 LLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 195/388 (50%), Gaps = 33/388 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I P   FFA+KG +++G+DF L A+ +GA   VV+  M        I +  V 
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDETM-----DQDIRIIQVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL   A + R      +  +TGS GKTT KE++   LS+  KT+A  G+ NNH+GV
Sbjct: 68  DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M  D +  I E+G +H  EI  L  + +P I  IT    AH+  F G+E I   
Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187

Query: 210 KAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++   E    + +N+DDS  +  K K H       + FG SK        WK  S+
Sbjct: 188 KSELYDFAFEHQTQVMVNFDDS-LQSEKTKDH-----NRFGFGHSKGG----VTWKSTSD 237

Query: 269 QSWMEVQLQ--GKSMEVVHHGIGYHMAQNM--LMTLGI-VSILTADVDTAIKALSVFHPK 323
             +  +QL+  G S  +     G+    N+    TLG+   +   D+ TA++A   + P 
Sbjct: 238 NEFASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDIKTALEA---YVPS 294

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +   N     ++ ++YNANP SM  +I    +    G    + +LGDM E+G+
Sbjct: 295 MNRVEWRKTQYN----AVLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGK 346

Query: 384 LSQSFHIDLA-EVLSLYNISHVWLSGFH 410
            S+  H  +  EV+SL    +  L G H
Sbjct: 347 ASKVEHEAIVREVISLDMAQNCILIGEH 374


>gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 452

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 215/447 (48%), Gaps = 24/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I     F A+ G  +D HDF   A   GA  ++V+  +      + +P  
Sbjct: 24  IESVSTDTRTIESGSLFVALVGERFDAHDFAGQAASAGASALLVSKAV-----DVQVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL KL        +   +AITGS GKTT KEM+   ++   +     G++NN 
Sbjct: 79  LVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKTTVKEMVASIMTQKGQVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + DF + ELG +H+GEI + T LV P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSQPEDDFAVIELGANHVGEIAYTTQLVNPDVAMVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWK- 264
             AK EI++GL+      +N D +  E  +     L  KT+ +F  S N A+++ R    
Sbjct: 199 KRAKGEIYQGLKPGSVAIVNLDSNGGEHWR---EVLSDKTVKTFSLSDNSAEYKARNVTM 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + ++   +Q    S +V    IG H   N L    +   L A  +     L+     +
Sbjct: 256 NVNGEASFTIQTPETSFDVKLGIIGQHNVSNALAATALSLELGATTEMIASGLANLSKVK 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +      +     LID+SYNA+  +MKAA  +L+      +G R  VLG+M E+GE 
Sbjct: 316 GRVETVDLTDS---IRLIDDSYNASVPAMKAAADLLNSF----DGVRWLVLGNMAELGEE 368

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S + H  + E  + +   HV   G    A+ D       +H+ +T D +  FI+  L   
Sbjct: 369 SLALHRQVGEHAAPFKFEHVLTFGADTKAISDVCQG---MHF-DTHDHMIEFIEQQLSQQ 424

Query: 445 D---VVVVKSSNSCGFYRLINLLLEEF 468
                ++VK +NS G  ++   L E +
Sbjct: 425 TGPHTLLVKGANSAGMSKIAAALKEMY 451


>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 460

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 226/457 (49%), Gaps = 55/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +  
Sbjct: 83  PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +AVIT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               +EIA AK EI +GL + G    N D+        K+ ++  KT   FG+    D  
Sbjct: 203 LGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLS-RNNKTSSVNCKT---FGEKDTNDL- 257

Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307
                         VQL   G   ++ H  I Y    H   N+  T+ GI       + T
Sbjct: 258 ----------FPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFSKVPT 307

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++ +++         R++    +  FT+I++++NA+P+SMKAAI  L +++ + 
Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAY- 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H+   
Sbjct: 361 -KKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 419

Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           ++ D      +  L      DVV++K S       ++
Sbjct: 420 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIV 456


>gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 467

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 179/383 (46%), Gaps = 15/383 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S DSR+I P E +  + G  +DG  FI     KGA   +++ D      ++SIP  
Sbjct: 35  IKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKECEDKGAEAFIID-DPTKINKTVSIPYV 93

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  LA A R      +I ITGS GKTTTK++L   LS   KT    G+ NN 
Sbjct: 94  RVADTKKALQDLATAYRKELSCKVIGITGSNGKTTTKDLLYKILSEKYKTQKTCGNLNNE 153

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP T+  +  D +  I ELG  + G+I   + +V+PHIA+IT I  AHL N      I
Sbjct: 154 IGVPKTVLSLDPDTEVAIIELGTDNFGDISLTSRMVKPHIAMITNIGDAHLHNLKTRSGI 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQ 265
             AK EI EG+E  G    N DD     +K +     IK  + SFG+S  ADF++   K 
Sbjct: 214 LKAKLEILEGMEDDGIFIYNIDDP---TMKEEIPTYDIKQKVLSFGRSDKADFKIVFEK- 269

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  S +    +    EV    +G H   N    + I  +L  + +            + 
Sbjct: 270 -SPTSIIRFSHENDHFEVPL--MGEHNIYNAAAVVMISEMLGLNKEMIDAGFMEVKSSQN 326

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +   C      F ++D+SY +NP S+ A +     +   G  R+I  L DM E+GE  
Sbjct: 327 RTELLEC----DGFDILDDSYKSNPQSLLAGLETTYML--EGYKRKIVCLADMLELGENE 380

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
              H ++ + L    I +    G
Sbjct: 381 VDLHREVGKKLDSKKIDYALFYG 403


>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
 gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
          Length = 453

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 219/447 (48%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF+  AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G     + D         + + M  +   I+   
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               V++VK +NS G  ++   L E+F
Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
 gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
          Length = 456

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 224/476 (47%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF+++   ++  + +   P      +  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A         VA++    +   P   VDDVL AL +LA     + K  + A+TGS GKTT
Sbjct: 63  A---------VATLSEKELDDYPSILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ +
Sbjct: 114 TKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTI 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + ++T I  AHL  F    EIA  K +I  G+++ G + +  D    + L ++ + 
Sbjct: 174 AQPKVGIVTLIGEAHLEFFKSRHEIAKGKMQIANGMKEGGLLIVPADKIINDFLPSQQN- 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG  +  D  L K ++  +    E      ++++     G + A N ++   
Sbjct: 233 -----VVRFGPDE--DIFLTKLEERKDSLTFETNFLDNAIDL--PVTGKYNATNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        D   KA +       R + ++ A N     ++ + YNANP +M+  +   S
Sbjct: 284 VALKEGVTQDKIQKAFATLELTRNRTE-WKKAKNGA--DILSDVYNANPTAMRLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDA 417
            I  + +GR++AVL DM E+G  S+  H  +   L+   +S ++L G  + AL    K+ 
Sbjct: 341 TIPFNEKGRKLAVLADMKELGADSKQMHGAMITSLNPEILSEIFLYGEDMAALFAYAKEI 400

Query: 418 LPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            P     HY       +    L   ++ +L   D +++K SNS     L+  L  E
Sbjct: 401 FPPG-KAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEELENE 455


>gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri VA-6]
          Length = 452

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 215/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI     L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIARTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S      +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H+ + E      I  V   G    A+  A    +  H+++    L   ++S + +  
Sbjct: 369 EDCHVQVGEAAKAAGIDRVLSMGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 229/497 (46%), Gaps = 53/497 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+QG  I     +          DSR I     F AI G   DGHD++
Sbjct: 1   MMPM-SLEEIAQAVQGRLIAGTAAIDTPVATSTFTDSRQIVEGSVFVAIAGERVDGHDYV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAAR--LRSKATIIA 112
                +GA   +V+ +    I    +P   V+D    LGAL K  +  R  L +  T+I 
Sbjct: 60  SKVGAQGAVAAIVDHE----IDGAGVPQIVVEDTVLALGALAKHNIERRRALETPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+++   L+ I  T A +GS+NN IG+PLT  ++  +  F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLMKALLAHIGPTIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIRGLVPGGLSVLNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---CSE---QSWMEVQLQGKSMEVVHH 286
               A   A+    +  FG  +N D +     Q   C E    S++     G+  EV   
Sbjct: 236 ----AAMSAIAPGDVMWFGLPQNNDGKPAISAQHVHCDELDHPSFILDNGDGEHAEVTLG 291

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALN-----QGF 338
             G H   N L    +   L     DV +A+  ++   P       +R A++     +  
Sbjct: 292 ICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISP-------HRMAVSIVNKQETS 344

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVL 396
           FTLID+S+NANP SMKA +  L +     E +  R+AVLG M E+G   +  H+ +    
Sbjct: 345 FTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHVGIGRYA 404

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-----------HVHYSETMDGLFLFIQSSLVD-- 443
               +  +   G    A  DAL  ++           HV +   +D     +    V+  
Sbjct: 405 LEGGVDALLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTRLAVEHP 464

Query: 444 GDVVVVKSSNSCGFYRL 460
           G VV++K S++ G   L
Sbjct: 465 GAVVLLKGSHASGLSAL 481


>gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychromonas ingrahamii 37]
 gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychromonas ingrahamii 37]
          Length = 489

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 196/413 (47%), Gaps = 49/413 (11%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +A  G  I    P+   N IS D+R I   + F A++G  YD H F+  AVQ+G
Sbjct: 18  TLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQG 77

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
           AG ++++    + +     P   V D   AL  LA   R +  +    AITGS GKTTTK
Sbjct: 78  AGALLIDQKKRSDL-----PCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTK 132

Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           E+L+  L     + +   A  G++NN IG+PLTL R+     + + ELG +HLGEI +  
Sbjct: 133 ELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVELGANHLGEIAYTA 192

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-------- 231
            L +P +A+I  + PAHL  F  ++ +A AK EI+  L  TG   +N D  F        
Sbjct: 193 QLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNLDSDFASEYLTQL 252

Query: 232 ---------FELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                    F     K+H      I+ S GK   A F+L        Q+ + +QL     
Sbjct: 253 KKLNRQVFTFSKESEKAHVSASNIIFSSLGK---ASFRLNVMLNRDPQA-ISIQL----- 303

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               +  G H   N L    +   L  ++      L +    EGR       LN+   TL
Sbjct: 304 ----NLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRE--LNK-LVTL 356

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           ID++YNANPAS+K AI +L Q +       + VLGDM E+G+ S+  H  + E
Sbjct: 357 IDDTYNANPASVKVAIDLLQQYASS----HLLVLGDMAELGDFSEHEHFLIGE 405


>gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 195/388 (50%), Gaps = 33/388 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I P   FFA+KG +++G+DF L A+ +GA   VV+  M        I +  V 
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDETM-----DQDIRIIQVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL   A + R      +  +TGS GKTT KE++   LS+  KT+A  G+ NNH+GV
Sbjct: 68  DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M  D +  I E+G +H  EI  L  + +P I  IT    AH+  F G+E I   
Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187

Query: 210 KAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++   E    + +N+DDS  +  K K H       + FG SK        WK  S+
Sbjct: 188 KSELYDFAFEHQTQVMVNFDDS-LQSEKTKDH-----NRFGFGHSKGG----VTWKSTSD 237

Query: 269 QSWMEVQLQ--GKSMEVVHHGIGYHMAQNM--LMTLGI-VSILTADVDTAIKALSVFHPK 323
             +  +QL+  G S  +     G+    N+    TLG+   +   D+ TA++A   + P 
Sbjct: 238 NEFASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDIKTALEA---YVPS 294

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +   N     ++ ++YNANP SM  +I    +    G    + +LGDM E+G+
Sbjct: 295 MNRVEWRKTQYN----AVLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGK 346

Query: 384 LSQSFHIDLA-EVLSLYNISHVWLSGFH 410
            S+  H  +  EV+SL    +  L G H
Sbjct: 347 ASKVEHEAIVREVISLDMAQNCILIGEH 374


>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 483

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 154/493 (31%), Positives = 237/493 (48%), Gaps = 50/493 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ +  ++ +A+ G  IG         N +S DSR   P   F AI+G H DGHDF+ 
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDADSESRSTNTVS-DSRQAGPGSVFVAIRGEHVDGHDFVA 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAI 113
               +GA + +V+ +    + S  +P   V D + AL +LA    +R +       II +
Sbjct: 59  KTAGQGATVAIVDHE----VESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGL 114

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+G
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD    
Sbjct: 175 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI- 288
            +      L    +  FG   + + ++R     +++S    +  V   G     VH GI 
Sbjct: 235 PMA----GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLID 343
           G H   N L    +        +T  + L+  H        +R AL+    +G  FTLID
Sbjct: 290 GRHNVMNALAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLID 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +S+NANP SMKA ++ L   + + +G+   R+A+LG M E+G    + H  +    +   
Sbjct: 346 DSFNANPDSMKAGLNGLKAWNSN-DGKDPFRVALLGAMLELGADETALHTSIGTYAAELG 404

Query: 401 ISHVWLSGF----HVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVV 447
           I  +   G     H+ AL  AL              VH  +  + L + +  +  D  VV
Sbjct: 405 IDAIIAVGSAQDQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLARNHPDA-VV 463

Query: 448 VVKSSNSCGFYRL 460
           ++K S++ G   L
Sbjct: 464 LLKGSHASGLSAL 476


>gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
 gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
          Length = 454

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 210/449 (46%), Gaps = 35/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +   P  
Sbjct: 29  IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVAGHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A   LA     + +  +IA+TGS GKTTTK+M+   LS+  KTY   G+YNN 
Sbjct: 79  WVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +PHI V+T I  AHL  F   E+I
Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I +   D+  +    +S     + +  FG    A+  ++  ++ 
Sbjct: 199 AEGKLQIVDGMDSDG-ILIAPADTIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E       +  + + +     G + A N ++   +  +L    D  ++AL        R
Sbjct: 251 KESLTFMTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   S+I  +  G++IAVL DM E+GE S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437
             H  +   LS   +  +   G  +  L     +      V+Y       +  D +   +
Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           Q  L   D +++K SNS    +++  L E
Sbjct: 426 QKVLQPADQILLKGSNSMQLAKVVEALEE 454


>gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 470

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 193/411 (46%), Gaps = 17/411 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ + T    L+ I G ++       ++ +  D+R+I P + F A++G  +D +D +  A
Sbjct: 1   MSAMMTLSHALKLIPGATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+ +  + AS     +P   V++   AL  LA   R +    +IA+TGS GKT
Sbjct: 61  FAKGAAAVLCHAGLTASAYPAGLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKT 120

Query: 121 TTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T  +M+   L   +      A +G++NN IGVPLTL RM       + ELGM+H GEI  
Sbjct: 121 TVTQMIASILHAHAPDGAALATVGNFNNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAV 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      HL     IE +A     +   L +TGT     DD +  L + 
Sbjct: 181 LAAMAQPTVALVNNAQREHLEFMHTIEAVARENGSVLSSLPETGTAVFPADDDYAPLWRE 240

Query: 238 KSHALGIKTIYSFGKSK-NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293
            S     + + +F +    ADF +R   W+   + +W  V    +        I G H  
Sbjct: 241 LSAG---RVVATFARGDAGADFVVRSASWQ---DGAWQVVAGTPQGELRYRLAIAGRHNV 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L              T  + L  F P +GR +  +       FTL+D++YNANP SM
Sbjct: 295 KNSLAAAACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSM 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +AAI VL+ +     G R+ V+GDM E+GE   +FH +         I HV
Sbjct: 355 RAAIDVLADLP----GPRLLVMGDMGEVGEQGPAFHAEAGRYARDAGIEHV 401


>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
          Length = 460

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 227/457 (49%), Gaps = 55/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 83  PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               EEIA AK EI +GL   G    N D+    LL    + LGI++    GK  N  F 
Sbjct: 203 LGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLGIESKSFGGKYTNDLFP 259

Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307
                         VQL   G   ++ H  I Y    H   N+  T+ GI       + T
Sbjct: 260 TN------------VQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 307

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++ +++         R++    +  FT+I++++NANP+SMKAAI  L +++ + 
Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKLNAY- 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H    
Sbjct: 361 -KKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYHAGKV 419

Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           ++ D      +  L      DVV++K S       ++
Sbjct: 420 QSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIV 456


>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
 gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
          Length = 468

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 215/445 (48%), Gaps = 16/445 (3%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIP 84
           GI+ D+R +   + F A++G  +DG DF   A++ GA  V+    V+      +  +S  
Sbjct: 30  GITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMSGA 89

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V GV D L A  ++A A R++    ++A+TGS GKTTTKE+   ALS          +YN
Sbjct: 90  VIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRTAANYN 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PLTL  M  +    + E+GM   G+I  L  +  P + ++T +   H+     IE
Sbjct: 150 NEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIVTNVGETHMELLGSIE 209

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AKAE+   +   G + LN DD+    ++A++ A G++ I ++G    AD + +  +
Sbjct: 210 NIARAKAELVAAIAPGGIVILNADDARVVAMRAQA-ADGVR-ILTYGIRAEADIRAQALR 267

Query: 265 Q-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             C+E  +M V   G+  +     +G H   N L  L     L          LS   P 
Sbjct: 268 SACNETRFM-VTYGGERHDYAVPLLGRHNVYNALAALAAGFALGLSPQEMQAGLSRLAPP 326

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R + +      G +T I+++YNA+PASM+AA+   +++ P   GRRIAVLGDM E+G 
Sbjct: 327 KMRYEVHHV----GAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGA 379

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   H  +    +    + V   G     + +A   +     ++ T +     ++  L 
Sbjct: 380 ASAEGHRSVGRTAAAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLA 439

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           DGD V+ K S       ++ L   E
Sbjct: 440 DGDTVLFKGSRGMRMEHIMELAAGE 464


>gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
 gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
          Length = 454

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 209/447 (46%), Gaps = 35/447 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +   P  
Sbjct: 29  IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVAGHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A   LA     + +  +IA+TGS GKTTTK+M+   LS+  KTY   G+YNN 
Sbjct: 79  WVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +PHI V+T I  AHL  F   E+I
Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I +   D+  +    +S     + +  FG    A+  ++  ++ 
Sbjct: 199 AEGKLQIVDGMDSDG-ILIAPADTIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E       +  + + +     G + A N ++   +  +L    D  ++AL        R
Sbjct: 251 KESLTFTTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   S+I  +  G++IAVL DM E+GE S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSET-----MDGLFLFI 437
             H  +   LS   +  +   G  +  L        P     ++ +T      D +   I
Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPIGKVYYFKKTADENQFDAMLETI 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Q  L   D +++K SNS    +++  L
Sbjct: 426 QKVLQPADQILLKGSNSMQLVKIVEAL 452


>gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 465

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 209/452 (46%), Gaps = 41/452 (9%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L QA QG      +P+  +  I  DSR     +AF A+KG  +D HDF+     +
Sbjct: 14  WTAEQLQQATQGEWFRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  + +V   + + I  L      V D   AL  L    R +++   +IA+TGS GKTTT
Sbjct: 74  GCQIAIVERPIDSDIAQLI-----VKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  F + ELG +H GEI + ++LV
Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRPEHQFAVMELGANHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A I  I  AHL  F G + I  AK+EI+  +   GT  +  DD F   ++  +   
Sbjct: 189 QPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILPDGTAIVPSDDDFTATIRQNA--- 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   I SFG+    D    + +   + +   +     S  V     G H  QN       
Sbjct: 246 GNHPILSFGEG--GDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS 361
              +   +D  ++ L     ++ +G + R    Q   +  ID++YNANP SM+AA  VL 
Sbjct: 304 ALAIGIPLDDIVQGL-----EQAQGAKGRLNFIQHQNYLFIDDTYNANPTSMRAAAKVLL 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------------- 408
           Q     +G ++ V+GD+ E+G+ S   H DL   L    + H+ + G             
Sbjct: 359 Q----QQGLKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVVVGEFAEAAQQGSGCA 414

Query: 409 --FHVLALK-DALP---RSIHVHYSETMDGLF 434
              H  A + DALP     +  H  ++M  LF
Sbjct: 415 ENLHAFATQADALPFLINLVQTHQPQSMSFLF 446


>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
 gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
          Length = 451

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 228/453 (50%), Gaps = 47/453 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 24  MHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 73

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 74  PKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGITGSNGKTTVKDIIGGILSSTYRVHKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 134 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 193

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258
               EEIA AK EI +GL   G    N D+    LL    + LGI++    GK  N  F 
Sbjct: 194 LGSREEIAKAKFEIIDGLNDDGLFLYNGDEP---LLSQNINMLGIESKSFGGKYTNDLFP 250

Query: 259 ---QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              QL ++    K  + +   +V L GK           H   N ++ + +       ++
Sbjct: 251 TNVQLDEYGVHFKLNNTKIQYDVPLHGK-----------HNILNAIVGIAVGQFYKVPIE 299

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL   +  +    R++    +  FT+I++++NA+P+SMKAAI  L +++ +   ++
Sbjct: 300 KIQEALQQINITQ---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--EKK 354

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H    ++ D
Sbjct: 355 IIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFTYGALSEIVAEEARKNYHTEKVQSFD 414

Query: 432 G---LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               +   I   +   DVV++K S       ++
Sbjct: 415 NKDEIAEEILKVITKKDVVLLKGSRGMALEEIV 447


>gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
 gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
          Length = 459

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 211/442 (47%), Gaps = 15/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I P + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 28  ITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL ++A       K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 86  LVEDTLLALQEMAKKYIQEVKPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 146 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   Y+++        SH  G     +FGKS+ A+         
Sbjct: 206 AKAKLEITAGLSPSGILIYPYEEALL-----LSHIDGDFRQLTFGKSQEAEIYPLAIHAE 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +E +      +   +E+    IG H   N + T+     +  + +   KAL      E  
Sbjct: 261 AEGTAFVTNWE-PDLEIFVPIIGEHNVFNAMATMLAAREIGIEGEKIQKALRNM---ERS 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R      +    +++++YN++P ++K  +     +   G+ R+  VL DM E+GELS+
Sbjct: 317 KSRLEWLTTKNGTRILNDAYNSSPTALKTVLKTFMHMDSQGK-RKYLVLADMLELGELSE 375

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVD 443
             H + AEVL    +  V+L G  + A ++     I    V + +T + L   + + +  
Sbjct: 376 QLHKESAEVLEEGAVEKVFLYGEAMKAFEEVAKIKIGQRKVQHFDTKESLETALLNEMDG 435

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
            + ++VK S   G   ++  L+
Sbjct: 436 NEWILVKGSYGMGLKDVVENLI 457


>gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 459

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 198/386 (51%), Gaps = 21/386 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR +     F A+KG  +D HDF   AV+ GAG +     +V+ +  ++ P  
Sbjct: 30  ISDVTTDSRRVGNGSLFIALKGERFDAHDFFADAVKAGAGAL-----LVSRVLDINFPQV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+ KLA   R +S A ++A+TGS GKT+ KEM    L     T    G+ NN 
Sbjct: 85  VVKDTRLAMGKLASWVRQQSNARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    +F + ELG SH+GEI +   + RP  A++  +  AHL++F  +  I
Sbjct: 145 IGVPLTLFRLTEQHEFAVVELGASHVGEIAYTVEMARPETALVNNLFAAHLADFGSLASI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR--K 262
           A AK EIF GL + GT  +N + + +   +     +G KT+  +S  ++  ADF     +
Sbjct: 205 AKAKGEIFTGLSEKGTAIINMESNDWAHWQ---QVIGDKTVQRFSMQQASGADFYATDIQ 261

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            KQ +    +   +    + +   G  +++A  +  +   +S+     D     L +   
Sbjct: 262 VKQLTTDFCLHTPIGSTEINLPLPG-KHNVANALAASALAISVGATLQDI---RLGLSEL 317

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           K   G+ +   L +G   L+D++YNAN  SM  A+ VLSQ+     G R+ V+GD+  +G
Sbjct: 318 KAVPGRLFPINLAEGKL-LLDDTYNANVGSMTVAVQVLSQMP----GYRVLVVGDIGALG 372

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
           E S  +H  + E ++   I+ V+  G
Sbjct: 373 EQSADYHRQIGETVASCGINSVFSVG 398


>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 453

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 203/432 (46%), Gaps = 20/432 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           ++ +  DSR + P   F    G   DGH F   A Q GA  ++ N   D V +  ++ +P
Sbjct: 21  IHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVPADRTVVVP 80

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
               D  L A+ ++A   R+     II +TGSVGKTTTKE     LS+   T    G+ N
Sbjct: 81  ----DSAL-AMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFGNTLKTEGNQN 135

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP TL R+    ++ + E+GM H GEI  LT  VRP   +IT I  +HL N    E
Sbjct: 136 NEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLENLGTRE 195

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            I  AK EI  GL     + LN D+      +       ++ ++ FG  + AD +    +
Sbjct: 196 NILKAKMEICAGLPDGAPLVLNADNDLLPTAQVPGR---LRAVW-FGIEQEADVRAENIQ 251

Query: 265 QCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             ++  ++  V  +     V     G H   + L      + L  D     KALS +   
Sbjct: 252 TGAQGTTFTLVDREYGRFPVSIPTAGLHTVYDALSAYAAATRLGLDPANCAKALSRY--- 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +  G R    + +G  T+I++ YNA+P SMKAAISVL  +      R+IA+LGDM E+G+
Sbjct: 309 QTTGMRQHI-VERGGVTVIEDCYNASPDSMKAAISVLKALP---NKRKIALLGDMLELGD 364

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442
            S+  H    E ++   +  +   G     + +A   R +   + +    +   +Q  + 
Sbjct: 365 ASEEGHRHTGEWVAEAGVDTLIAYGPRSAVMAEAAQARGVTTVHCQKAQEVLQCLQQFVQ 424

Query: 443 DGDVVVVKSSNS 454
            GD ++ K+S++
Sbjct: 425 PGDALLAKASHA 436


>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate
           [Bacillus cereus Q1]
 gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus Q1]
          Length = 451

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 227/457 (49%), Gaps = 55/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 24  IHGVCIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 73

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 74  PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 134 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 193

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               EEIA AK EI +GL   G    N D+    LL    + LGI++    GK  N  F 
Sbjct: 194 LGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLGIESKSFGGKYTNDLFP 250

Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307
                         VQL   G   ++ H  I Y    H   N+  T+ GI       + T
Sbjct: 251 TN------------VQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++ +++         R++    +  FT+I++++NANP+SMKAAI  L +++ + 
Sbjct: 299 EKIQEALQQINITQ------MRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKLNAY- 351

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H    
Sbjct: 352 -KKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYHAGKV 410

Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           ++ D      +  L      DVV++K S       ++
Sbjct: 411 QSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIV 447


>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 434

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 200/395 (50%), Gaps = 22/395 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I P   FFA++G +++G+ +   A+++GA   VV+   +A+     +    VD
Sbjct: 16  VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQDRCIV----VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +    IIAITGS GKTTTKE++   L S    +   G+ NNHIGV
Sbjct: 72  DVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL ++   ++  + E+G +H GEI  L  +  P   +IT I  AHL  F GIE +   
Sbjct: 132 PLTLLQLDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNIGKAHLEGFGGIEGVKKG 191

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-- 266
           K+E++  L +T G  F+N D+ F   L +     G++    + +S +     + ++    
Sbjct: 192 KSELYRYLAETDGLAFVNNDEPFLVELSS-----GVRKRIFYERSDDPAPNHKPYEVVLL 246

Query: 267 SEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             Q ++ V    ++ +++  G   +G H  QN+   + +             A+  ++P 
Sbjct: 247 QLQPFIRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGKKIKAAIENYNPN 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +      N    +++ ++YNANP+SM+  +   S+ SP  +  RIA+LGDM E+GE
Sbjct: 307 MNRSQWVSWGTN----SILLDAYNANPSSMEVTLRSFSE-SPASQ--RIAILGDMFELGE 359

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            S   H  +A++    N   V L G H  A+   L
Sbjct: 360 SSAVEHERVAQLAQSLNFEQVILVGQHFAAIARQL 394


>gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
          Length = 463

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 214/435 (49%), Gaps = 19/435 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGS--- 80
              G SIDSR+I   E FFA++G   DGHD++  A+  GA   VV+   +  A++     
Sbjct: 23  LAQGYSIDSRTIGAGELFFAVRGERVDGHDYVETALADGAVAAVVSMRWLKPATVEEGKL 82

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L +P    D VL ++ KLA   R      II +TGS GKTTTKE +   LS+        
Sbjct: 83  LRVPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGKTTTKECIAQVLSAKFHVLKSE 142

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN  G+PL L ++  + +  + E+GM+H GEIR L  +  P  AV++ +AP HL +F
Sbjct: 143 GNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVHLEHF 202

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
             GIE IA AK E+ E L   G   LN DD   E + A    +  +T+  +G       +
Sbjct: 203 PDGIEGIARAKYELVEALPADGIAILNGDD---ERVAAFGKGMRGRTVL-YGTLPGLTVR 258

Query: 260 LRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             + ++   + +   V + G+  ++    +G H   N L  + +      D+     AL 
Sbjct: 259 AVEIEEAGLDGTRFRVGIVGRVQKIHLRLMGRHNVLNALAAVAVGLQSGIDLKDCCLALE 318

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P E RG+     + +    +I++ YN+NP +++A +  L +       RRI + G+M
Sbjct: 319 QMRPTEKRGE----VIERHGAKIINDCYNSNPRALEAMVEALRKTKAT---RRIVMAGEM 371

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G    + H +    ++  ++  V + G     ++ A    +  ++ ET +    +++
Sbjct: 372 LELGPEGAALHRECGIAMAGMDVV-VGVRGLAASLVEGAESEGVEANFVETPEAAGEWLR 430

Query: 439 SSLVDGDVVVVKSSN 453
            +L +GDVV++K+S 
Sbjct: 431 ENLREGDVVLMKASR 445


>gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 452

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TAIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ HI
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHI 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 456

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   
Sbjct: 26  DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   +      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI F   L +PH+A+IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELTPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
           G ++I  AK EI EGL  +GT  LN +D  F + + ++   G + I +F      AD   
Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253

Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  + C      S     +VQL         + +G H   N L        L   +
Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L+   P +GR    + A N     +ID++YNANPAS+ AA+ +L+  S    GR
Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFS----GR 357

Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
            + VLGD+ E+GE ++  H D+      +V +LY +
Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393


>gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 456

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   
Sbjct: 26  DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   +      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI F   L +PH+A+IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
           G ++I  AK EI EGL  +GT  LN +D  F + + ++   G + I +F      AD   
Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253

Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  + C      S     +VQL         + +G H   N L        L   +
Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L+   P +GR    + A N     +ID++YNANPAS+ AA+ +L+  S    GR
Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFS----GR 357

Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
            + VLGD+ E+GE ++  H D+      +V +LY +
Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393


>gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
 gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
          Length = 453

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGQV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G+     L     TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKGRVDMTQLRDD-ITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G +   + D         + + M  +   I+   
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKYAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               V++VK +NS G  ++   L E+F
Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
 gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
          Length = 485

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 226/476 (47%), Gaps = 37/476 (7%)

Query: 21  IVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDM 74
           +VP    +  V G + DSR + P   + A+ G  +DG DF ++A+  GA   LV+ + D 
Sbjct: 17  VVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALDAGAACLLVMRSPDE 76

Query: 75  VASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             ++ +      +  V+D   A   LA A R R   ++IAITGS GKTTTK ++   L+ 
Sbjct: 77  ALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSGKTTTKNLVRDVLAR 136

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                A  G+ NN +GVP TL R   D  F + E+GM   G+I  L   VRP +A++T +
Sbjct: 137 AGSVVATQGNQNNELGVPATLLRAEEDTQFVVVEMGMRGRGQIESLCRFVRPDMALVTNV 196

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHA--LGIKTIYS 249
             +H+      + IA AKAEI  G++  TG  F+N  D F  +L A   A   G++ ++ 
Sbjct: 197 GESHIELLGSRDGIARAKAEIIAGVKANTGIAFINASDDFASMLPAYGSADERGVEILFF 256

Query: 250 FGKSKN-ADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGI----------GYHMAQNM 296
            G  K  A +  +   +      S +E+   G +   +H             G H   N 
Sbjct: 257 DGSGKEPASYAAQDGIEVPSTFASDIELDEAGCARFTLHTPTGTASVHLALAGLHNVHNA 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                + S +       + AL      +GRG+  R A       ++D++YNANP SMKA+
Sbjct: 317 TAAAAVGSQVGLSASVIVDALEKATSLDGRGRVVRTASG---VVVVDDAYNANPDSMKAS 373

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-----WLSGFHV 411
           +   + +  H  GR IAVLGDM E+G+ ++  H  +  +++   I  +        G   
Sbjct: 374 LGSFAAM--HFAGRHIAVLGDMGELGDTAEEAHARIGSLVASLPIDLIICVGSLACGIAR 431

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLLLE 466
            A+   +P    +  ++    L   +  SLV+ GD ++VK+S+S G   ++  L++
Sbjct: 432 AAVAAGMPEDAAICVTDASAALDQVV--SLVNAGDGILVKASHSVGLEAVVKGLVK 485


>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 454

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 227/457 (49%), Gaps = 55/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 27  IHGVCIDSKNMKEGNLFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 76

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VD+ L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 77  PKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIESILSSTYRVHKT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +P +AVIT I  +HL  
Sbjct: 137 KGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               +EIA AK EI +GL + G    N D+        K+ ++  KT   FG+    D  
Sbjct: 197 LGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLS-RNNKTSSVNCKT---FGEKDTNDL- 251

Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307
                         VQL   G   ++ H  I Y    H   N+  T+ GI       + T
Sbjct: 252 ----------FPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVPT 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++ +++         R++    +  FT+I++++NA+P+SMKAAI  L +++ + 
Sbjct: 302 EKIQEALQQINITQ------MRFQFLTAKKGFTIINDAWNASPSSMKAAIETLQKLNAY- 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H+   
Sbjct: 355 -KKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 413

Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           ++ D      +  L      DVV++K S       ++
Sbjct: 414 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIV 450


>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
          Length = 456

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 206/462 (44%), Gaps = 26/462 (5%)

Query: 8   HDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            D++ A+ G  I  G++ Q  +  I+ DSRS      F  +KG  +DGH+FI    +KG 
Sbjct: 6   QDIISAVGGKCIQEGLIKQP-IEVITTDSRSQVTNGLFVPLKGDRFDGHEFIKSVYEKG- 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+    M   +    +    V+D   AL  L    R +    ++ ITGSVGKT+TKEM
Sbjct: 64  --VIATLTMEDKVIDPRLWTIKVEDTRQALLDLGHYYRNQFTVPVVGITGSVGKTSTKEM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS     +   G++NN IG+PLTL +M    +  + E+GM+H  EI  L+    P 
Sbjct: 122 VAAVLSGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEIHRLSLAAAPE 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT +  +H+ N    E I  AK EI +GL   G + LN D+   +LL         K
Sbjct: 182 VAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDN---DLLSTVGELPFNK 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y    S   D+         E +   V        +    +G HM  N L  + +   
Sbjct: 239 VTYGLNTSN--DYYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNTLAAIAVAQY 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        K L  + P + R        NQ   T+ID++YNA+P SM+AA+ VL     
Sbjct: 297 LGLSKAEIQKGLESYAPAKMR-MHLETYDNQ--ITVIDDTYNASPDSMEAALKVLRDYDT 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419
             +GR+IAVLGDM EMGE +   H  +    +   I  V+  G      F     ++  P
Sbjct: 354 --KGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDRVYAVGTLAEYIFKGAKEQEGAP 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 Y  T +     +Q  L   D V+ K+S    F  ++
Sbjct: 412 ----TFYYPTKEAFIEVMQRELQAEDTVLFKASRGMHFEEML 449


>gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
 gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
          Length = 456

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 214/458 (46%), Gaps = 49/458 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           +N I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     IP  
Sbjct: 26  LNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFENGA---------VATFSEKEIPGK 75

Query: 85  -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               V D L A   LA     + +  +IA+TGS GKT+TK+M+   L++  KTY   G+Y
Sbjct: 76  PYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNY 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP D +  + E+G  H+G+I  L+ + +PHIAV+T I  AHL  F   
Sbjct: 136 NNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAKPHIAVVTLIGEAHLEFFGSR 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQL 260
           E+IA  K +I +G++  G I +   D   +    ++  L       FG ++     D Q 
Sbjct: 196 EKIAEGKMQIIDGMDSHG-ILIAPGDPIIDPYLPENQML-----IRFGDNQEIYVKDIQE 249

Query: 261 RKWKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           RK       + ++    + L GK           + A N ++   +  +L  + D  I+A
Sbjct: 250 RKNSLTFTTNVLDRAITLPLSGK-----------YNASNAMIAAYVGKLLAVEDDDIIEA 298

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L      + R + ++ A N     ++ + YNANP +M+  +   S ++P  +G++IAVL 
Sbjct: 299 LENIQLTKNRTE-WKKAANGA--DILSDVYNANPTAMRLILESFSSLTPENQGKKIAVLA 355

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYS 427
           DM E+G  S   H  +   LS   I H+   G  + +L     +   +            
Sbjct: 356 DMKELGPKSVELHQQIITALSPDKIDHLVFYGNDIESLAQLASQMYPIGKVYFFKKTEDQ 415

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  D +   ++  L   D +++K SNS    +L+  L+
Sbjct: 416 DQFDAMANHVKEILEANDYLLLKGSNSMHLDQLVEQLV 453


>gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
 gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
          Length = 457

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 224/471 (47%), Gaps = 27/471 (5%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +     +  L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAADDTAIVNLESNGGDFW---NDVLA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            K++ +F +S +      K    +EQ  +  ++Q    S+ V    IG H   N L    
Sbjct: 237 DKSVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     A +D     L+     +GR +  + + N     LID+SYNA+  +MKAA  +LS
Sbjct: 297 LSIQFGASLDEVKNGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +    +
Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCNGT 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVV----VVKSSNSCGFYRLINLLLEEF 468
              H++ T   +   I+  L   + V    +VK +NS G  ++   L E F
Sbjct: 410 ---HFT-THQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456


>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
 gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
          Length = 458

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 11/404 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G +  G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA + R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLMA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-KDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             G  ++I VLGDM E+G+    FH ++ +++    I+ V+  G
Sbjct: 357 --GFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFTYG 398


>gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
 gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC 49946]
 gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
          Length = 452

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 213/443 (48%), Gaps = 25/443 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R  A    F A+KG  +D HDF+  A+  G   ++V+  +      + +P   V 
Sbjct: 27  VTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVSKRL-----PVELPQVVVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +S A I+A+TGS GKT+ KEM    L    +T    G++NN IGV
Sbjct: 82  DTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTAAILRECGETLYTTGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +  + + ELG +H GEI + + LVRP  A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLKPEHRYAVIELGANHQGEIAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268
           K EIF GL   GT  +N D + +   +   HA   KT++ F   + ++DF        ++
Sbjct: 202 KGEIFSGLPLNGTAIINSDSNDWPHWQQALHA---KTVWRFSPEQADSDFYAANVTISAQ 258

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +      ++V+    G H   N L    +   + A +    + LS      GR  
Sbjct: 259 GTHFTLHSPLGDVDVILPLPGRHNIANALAASALALSVGAPLSAVRQGLSTLKAVPGR-- 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +  AL+     L+D+SYNAN  SM AA  VL+ +     G R+ ++GDM EMG  +   
Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGMP----GYRVMIVGDMAEMGAEAAEC 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444
           H  +   +    I  V  +G     + DA    +  H+++     +  L L  Q   +  
Sbjct: 372 HRQVGNAIRHAGIDKVLSTGSLSHGISDA--SGVGEHFADKAALGVRALELLAQHQHI-- 427

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
             ++VK S S    +++ +L E+
Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449


>gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 480

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 189/386 (48%), Gaps = 34/386 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I   + F A+KG ++DG  F+  A   GA   VVN D         +P+  V+
Sbjct: 25  VSTDTRTIQQGDLFIALKGENFDGARFVAQAAMAGAVAAVVNRDAGLRTQDSGVPLLFVE 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-------------- 135
           D   AL +LA   R +    ++AITGS GKTT KEML+  L    K              
Sbjct: 85  DTRLALGELAAYWRAQFDIPLVAITGSNGKTTVKEMLSAILRQKIKDDSYDRSLAPRERV 144

Query: 136 ---------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                      A  G++NN IG+PLTL R+  +  + + E+GM+H  EI +LT +  P +
Sbjct: 145 GECDDADRFVLATKGNFNNDIGMPLTLLRLRANHRYAVIEMGMNHPNEIDYLTRIACPDV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++     AHL     +E +A AK EIF GL+  GT  +N DD+   L ++ +   G   
Sbjct: 205 ALVNNATGAHLQGLGTVEGVARAKGEIFAGLKDDGTAVINADDAHAALWRSLA---GKHR 261

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  F     A+ Q  KW        + V+     M +V    G H A+N L        L
Sbjct: 262 VLDFSLEHPANIQ-GKWVVQGYGGELLVRTPAGEMRIVLQVPGEHNARNALAAATAALAL 320

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                T +  L  F    GR +R +    +   TLID++YNANPASM AA+ VL+Q    
Sbjct: 321 QIPSATIVTGLQGFGGVAGRLQRKQA---KNGATLIDDTYNANPASMHAALEVLAQ---- 373

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDL 392
            +G+RI VLGDM E+GE +  FH ++
Sbjct: 374 AKGKRIFVLGDMGELGEDAAQFHREI 399


>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
 gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
          Length = 444

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 217/451 (48%), Gaps = 36/451 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +   + F A+   H DGH +I  A+  GA  V+V+     +     IP  
Sbjct: 22  ITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGAVAVLVDDQHAITP---DIPAI 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +L    R      +IAITGS GKTTTK+M    LS+  KT+    +YNN 
Sbjct: 78  IVPDTLLALQRLGQYRREMVNPKVIAITGSNGKTTTKDMTAAILSTKFKTFKTPENYNNE 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL  MP D +  + ELGM   G++  L+HLV P IA+IT I  AH+  F   + I
Sbjct: 138 IGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPDIAIITMIGEAHIEFFQTRDNI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL+  G + + +D+        KS          FG+  +A   L      
Sbjct: 198 ARAKLEITQGLKSDGILLVPFDEPLLTQAAVKSDR------QYFGEKVSAIQALATVTTF 251

Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           + EQ    + + G+           +   N L  +    +L+ D+  A  AL  F   + 
Sbjct: 252 TFEQQKFAIPVMGR-----------YNVMNALAAISAGKLLSIDLKHAALALKNFDLTKN 300

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R   +QG   LI + YNANP ++ A +S L  +      R+  VLGDM E+G  +
Sbjct: 301 RTE--RLVTSQGVV-LISDVYNANPTAVAAVLSTLKSLPAR---RKYVVLGDMLELGTQA 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSG--FH-----VLALKDALPRSIHVHYSETMDGLFLFIQ 438
              H +L   +   ++  V+L G  F+     +L  K  + R +H++ ++ +  L   + 
Sbjct: 355 NHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKMGVER-VHLYQTDQLKQLASDLL 413

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           +    GDV+++K+S+      ++  L  E P
Sbjct: 414 AISQPGDVILLKASHGIHLEEVVQQLTSEQP 444


>gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1056]
          Length = 456

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 216/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I P + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  MAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++       
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++V  A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPLGKVHYFIKNDEKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
 gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
          Length = 455

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 174/365 (47%), Gaps = 18/365 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +  DSR+I   + F A+ GP +DGH F+     KGA   +V   M      L +P   
Sbjct: 26  DSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAVAALVQRTMP----ELGLPQLQ 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL +L    R      + A+TGS GKTT KEML   L +     A  G+ NN +
Sbjct: 82  VADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEMLASILRTRGPVLATRGNLNNDL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +    + ELG S +GEI +   L RP +A+IT    AH+  F G E+I 
Sbjct: 142 GVPLTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQVAIITNAGTAHVGEFGGPEKIV 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC 266
            AK EI EGL   G   LN DD  F++ + ++     + + SF   + +ADF  R   Q 
Sbjct: 202 EAKGEILEGLPADGIAVLNRDDPAFDIWQRRAAG---RRVLSFALDASDADFLARDI-QP 257

Query: 267 SEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +      L+G + E  +  + +G H   N L        L   +      L    P +
Sbjct: 258 DARGCPAFTLRGPAGEARIQLNLLGRHNVANALAAASAAHALGMPLVGIRAGLESLQPVK 317

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR              +ID+SYNANPASM+AAI +L+  S    GR +  LGDM E+G  
Sbjct: 318 GRAV---AQFAPSGVRVIDDSYNANPASMRAAIDILAGFS----GRTLLALGDMGELGAW 370

Query: 385 SQSFH 389
           ++  H
Sbjct: 371 AEEGH 375


>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
 gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
          Length = 464

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 214/445 (48%), Gaps = 38/445 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-PVFGV 88
           +  DSRS+   + F A+KG ++DGH F   A+ +GA  V++      S  +L++ P   V
Sbjct: 25  VGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLI------SDRTLNVQPAILV 78

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKTYACIGSYN 144
           DD   +L +LA   R +    + A+TGS GKTT KEML      A        A +G+ N
Sbjct: 79  DDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVKEMLASILRAACDQPDAVLATVGNLN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+PLTL ++     + + E+GM+H GEI +L+ + +P +A+I     AH+      E
Sbjct: 139 NHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGKPTVALINNAGNAHIGELGSFE 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK EIFEGL    T  +N DD F  L    +   G + I +FG    AD    +++
Sbjct: 199 AIARAKGEIFEGLAADATAVINADDVFAPLWLDLA---GQRKIMTFGLKNKADVT-AQYQ 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +  S +E+     +++V     G H   N L        + A +      L  +   +
Sbjct: 255 LHASASDIEITTPQGAVKVSLPTPGLHNVMNALAATSTALAMGASLQAVSIGLENYAGVK 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR ++ +  LN     +ID++YNANP SMK AI VL  +S    G +I VLGDM E+G+ 
Sbjct: 315 GRLQQ-KAGLNGAL--VIDDTYNANPMSMKVAIDVLMAMS----GEKILVLGDMGELGDN 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHV------HYSETMDGLFLFI 437
           +   H ++         S+   SG   L  L D    +         HY+   D L   +
Sbjct: 368 AAEMHAEIG--------SYAKASGLKSLFVLGDMSAETAKTFGAGAKHYTTPQD-LVTDL 418

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462
           +  +  G  V+VK S      R++N
Sbjct: 419 RKQMQQGTNVLVKGSRFMAMERVVN 443


>gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 470

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 216/462 (46%), Gaps = 33/462 (7%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V G +  DSR I P + F A  G   DGH F+  AV++GA L +V  ++   +  +
Sbjct: 25  PDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFVGTAVERGAALAIVERELDDPVSQI 84

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            +P     D + AL+ LA  V AR+R   +  I+ ITGS GKTTTK +L   LS   +T 
Sbjct: 85  VVP-----DAVTALSDLARDVVARVREHGRLRIVGITGSNGKTTTKNLLARILSDEGETV 139

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           +   S+NN +G PLT+ R+  D  F + E G S  G I  L  LV P + V+  +  AH 
Sbjct: 140 SPRASFNNEVGAPLTMLRVTEDTRFLVSEFGASAPGAIAHLAGLVTPDVGVVLMVGMAHA 199

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F GIE    AK+E+     + G   LN DD     ++  +   G + +  FG+ + A 
Sbjct: 200 GGFGGIESTFRAKSELVHATREGGLAVLNVDDPRVAAMEPFARERG-QDVRWFGRGERAA 258

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +    +  +  +  ++ + G+   +    +G H   N L  L   + L      AI  L
Sbjct: 259 VRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNALAALATATALGVPAAEAIARL 318

Query: 318 SVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                 E    R+R   L      +I+++YNA+P SM AA+  L+QI+  GE R +AVLG
Sbjct: 319 ETVEIAE----RWRMQPLGSDRVRIINDAYNASPDSMAAALRTLAQITGPGE-RTVAVLG 373

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---- 432
            M E+GE +   H  +  +     I  + + G       +A    +      + DG    
Sbjct: 374 AMSELGEYADEEHDRVGLLAVRLRIQRIVVIG------PEARRMYLEAIAQGSWDGEAVF 427

Query: 433 ------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                  + ++ + L DGD V+VKSSNS G   L + L E F
Sbjct: 428 FADADAAYDYLATELRDGDRVLVKSSNSAGLRFLGDRLGELF 469


>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 222/455 (48%), Gaps = 40/455 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ +  ++ +A+ G  IG         N +S DSR   P   F AI+G   DGHDF+ 
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDADSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVA 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAI 113
              ++GA + +V+ +    + S  +P   V D + AL +LA    +R +       II +
Sbjct: 59  KTAEQGATVAIVDHE----VESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGL 114

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+G
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD    
Sbjct: 175 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI- 288
            +      L    +  FG   + + ++R     +++S    +  V   G     VH GI 
Sbjct: 235 PMA----GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLID 343
           G H   N L    +        +T  + L+  H        +R AL+    +G  FTLID
Sbjct: 290 GRHNVMNALAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLID 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +S+NANP SMKA ++ L   + + +G+   R+A+LG M E+G    + H  +    +   
Sbjct: 346 DSFNANPDSMKAGLNGLKAWNSN-DGKDPFRVALLGAMLELGADETALHTSIGTYAAELG 404

Query: 401 ISHVWLSGF----HVLALKDALPRSIHVHYSETMD 431
           I  +   G     H+ AL  AL        S ++D
Sbjct: 405 IDAIIAVGSAQDQHLDALAQALADGARQSQSASVD 439


>gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK408]
          Length = 456

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 216/444 (48%), Gaps = 31/444 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR I P   F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDD
Sbjct: 30  EFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL--SERPVAEGAYIL----VDD 82

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           VL A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P
Sbjct: 83  VLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLP 142

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T+  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K
Sbjct: 143 YTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGK 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +  
Sbjct: 203 MQIADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSL 254

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +     + +++   G  Y+    M+     +    ++ D A +A S       R + +
Sbjct: 255 SFDCNFLEQKIDLPVTG-KYNATNAMIAAYAALQEGVSEADIA-QAFSELELTRNRTE-W 311

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  ++S H 
Sbjct: 312 KKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHG 369

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSS 440
            +   L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  
Sbjct: 370 SMITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREK 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L   D +++K SNS    +L+  L
Sbjct: 429 LTPADQILLKGSNSMNLAKLVEDL 452


>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 459

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 220/449 (48%), Gaps = 53/449 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +     F  ++G H DGH ++  A   GA   +  +D    + +   PV 
Sbjct: 26  VTSVSFDSRHLEKGALFVPLQGAH-DGHQYVETAFTNGAAATLWASDH--ELTNSDHPVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            V D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KTYA   ++
Sbjct: 83  VVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTKDMIASILSTQLNVTKTYA---NF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV P IAVIT I  AH+  F   
Sbjct: 140 NNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTR 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------- 252
           + IA AK EI  GL++ G    + D+    LL  ++  +  +T   FG+           
Sbjct: 200 DRIADAKMEIVNGLKEDGLFVYDGDEP---LLNERAANITQQTT-RFGRQLTDDLYATSV 255

Query: 253 ---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              S++ +F++ +W    EQ  + +             +G +   N L  + +   L   
Sbjct: 256 NAGSRSIEFKVNEW--PDEQFTIPM-------------VGEYNVNNALAAMAVAKRLHIS 300

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +    AL+     E R + ++    +    ++ + YN+NP + K  +  L+++    +G
Sbjct: 301 PNHIKTALANVELTENRAEWFKS---KNGAQILSDVYNSNPTAAKQVLKTLAEMPV--QG 355

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------SIH 423
           RRIAVLGDM E+GE +   H  LAE ++   I  V+L G  +  L+  L        +IH
Sbjct: 356 RRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAHLQAKLQEQGYPAAAIH 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + ++ +D L   +++ L   D+V++K+S
Sbjct: 416 YYQADQLDQLTAALEADLHPADMVLLKAS 444


>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 445

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/473 (30%), Positives = 233/473 (49%), Gaps = 37/473 (7%)

Query: 4   LWTFHDLLQ-AIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           L T  DLLQ  +QG  H +G+     V  I  DSR + P   F A++G  +DGH+FI  A
Sbjct: 4   LRTVADLLQTPLQGDPHLLGLP----VQAICTDSRQLQPGSVFVALRGERFDGHNFIPQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA + V++   VA       P F V D L A  ++A   R +   +++AITGS GKT
Sbjct: 60  LARGA-VAVISQRPVAG------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  ALS          ++NN IGV  TL +M  +  F + E+ M   GEIR L  
Sbjct: 113 TTKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPEHQFVVLEMAMRGPGEIRRLAQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A+IT I  AH+        IA+AK E+ + L + G   LN +D    LL + + 
Sbjct: 173 MAQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQELGQ-GVALLNGEDP---LLLSTAA 228

Query: 241 ALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +L      ++G  +     LR +W   ++     V ++G ++ V     G H A N +  
Sbjct: 229 SLWSGQTLTYGLDQG---DLRGEWDPQAQ----TVTVEGLTLPVPLP--GRHHALNWMGV 279

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  +  L  D +   + +++  P EGR +  + A   G   + DE+YNA+P +M AA+ +
Sbjct: 280 LAALRSLGLDWERLREPIALPTPLEGRNRHLKLA---GDVEIWDETYNASPEAMIAALHL 336

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA 417
           L+Q    G+ RR A+LG M E+GE +   + ++    +   +  + L      +  L D 
Sbjct: 337 LAQTP--GK-RRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLDPEGEMQPLLDQ 393

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            P +      E +  L   +   +  GD ++ K++ +    R+++  L+E+ A
Sbjct: 394 KP-AAQTERCEEVSELLEILLHHVQAGDRLLFKAARAVELERVLHRFLQEWQA 445


>gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 456

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 190/386 (49%), Gaps = 30/386 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR IAP + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 26  DGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+     R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+ +IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260
           G E I  AK EI EG+E +GT  LN +D  F + + ++    I T      + +    +L
Sbjct: 197 GPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGPRNILTFALADAAADFHAGEL 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +      M   L   S +V  + +G H   N L        L   ++  +  L+  
Sbjct: 257 SRDARGCPSFTMASPL--GSAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR       +      +ID++YNANP S+ AA+ +L+  +    GR + VLGD+ E
Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367

Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401
           +GE ++  H D+      +V +LY +
Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393


>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 451

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 187/381 (49%), Gaps = 34/381 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SIDSR I  Q  F   KG H DGH ++  A++ GAG             ++  P+ 
Sbjct: 26  IKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLD-ENIDGPII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL  LA A        +IA+TGS GKTTTK+M+   L    K     G+YNN 
Sbjct: 85  WVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKTTTKDMIESVLKPQFKVKKTQGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++ +D +  I E+GMS   EI  L+ L +P IA+IT I  +H+ +    E I
Sbjct: 145 IGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK+EI  GL+  G    + D+    LL+  ++ +    + SFG  KN+D  L    + 
Sbjct: 205 AKAKSEITLGLKPGGLFIYDGDEP---LLEPYANEIQNADLVSFG--KNSDNTLVSTIET 259

Query: 267 SEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALS-- 318
                  ++  G +  + H        +G H  +N  + + +   L     T    L   
Sbjct: 260 -------IKDHGIAFTINHDEHYELPILGEHNMKNATIAIAVGKRLNLTYQTIFNNLKNV 312

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V       G R      +    +I+++YNA+P SMKAAI  LS +    EGR+I VLGD+
Sbjct: 313 VL-----TGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTLSGM----EGRKIIVLGDV 363

Query: 379 CEMGELSQSFHIDLAEVLSLY 399
            E+G  SQ  H    E + LY
Sbjct: 364 LELGPDSQIMH----EAVGLY 380


>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 205/428 (47%), Gaps = 23/428 (5%)

Query: 7   FHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +L + +QGHSIG  VP   +  I IDSR++ P   F A+KG  +DGH F   A   GA
Sbjct: 6   LKELAEVLQGHSIGDNVP---ITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQSHGA 62

Query: 66  -GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            GL      +   +  + +P   V D   AL +LA   R +    ++A+TGS GKT+ KE
Sbjct: 63  VGL------LSECLLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L          G++NN IGVPLTL R+  + DF + ELG S  G+I     L RP
Sbjct: 117 MTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAALSRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              +IT +A AHLS F  ++ +A AK EI   L  TGT  ++   +  +  K KS   G 
Sbjct: 177 ENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHA--TSHDWPKWKSVFRG- 233

Query: 245 KTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           K ++ FG  K K  DF      +    +   +     S ++     G H   N L    +
Sbjct: 234 KRLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLPLPGLHNVLNALAASAL 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + AD+    KALS   P  GR   +   L  G   L+D++YNAN  SM AA  ++S 
Sbjct: 294 AISVGADLSAISKALSELKPVPGRA--FPMILGPGKL-LLDDTYNANVGSMIAATEMMSN 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +     G R+ V+GDM E+GE S++ H  +  ++    I  V+  G+    + D++    
Sbjct: 351 MP----GYRVMVVGDMAELGEQSKNCHKKIGNIMRQAGIDKVFSLGYLSKFMTDSIEHGE 406

Query: 423 HVHYSETM 430
           H    E +
Sbjct: 407 HFTQREKL 414


>gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
 gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
          Length = 457

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 224/471 (47%), Gaps = 27/471 (5%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I  +  AK EIF+GL    T  +N + +  +     +  L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSINGVKQAKGEIFQGLAAGDTAIVNLESNGGDFW---NDVLA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            K++ +F +S +      K  + +EQ  +  ++Q    S+ V    IG H   N L    
Sbjct: 237 DKSVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     A +D     L+     +GR +  + + N     LID+SYNA+  +MKAA  +LS
Sbjct: 297 LSIQFGASLDEVKNGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +    +
Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCNGT 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVV----VVKSSNSCGFYRLINLLLEEF 468
              H++ T   +   I+  L   + V    +VK +NS G  ++   L E F
Sbjct: 410 ---HFT-THQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456


>gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
          Length = 455

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 17/434 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +            +I
Sbjct: 21  QTVITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++
Sbjct: 78  AVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   
Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTR 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI + L + G    N D+    LL+ ++  L  +   +FG           +
Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAKKLD-QVKATFGFRDEDTVHATGF 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     +   +    +   +    IG H   N +  + +        +    +LS F P 
Sbjct: 254 KSYMHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPT 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +    +   + +   YN+NP +++A ++   Q+    +G RIAVLGDM E+G+
Sbjct: 312 ANRMEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGK 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438
            S + H  L++ L    I+ V+L G  +  L DAL     P  +H +  + MD +   ++
Sbjct: 369 SSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLK 428

Query: 439 SSLVDGDVVVVKSS 452
           + +   D+VV+K S
Sbjct: 429 NDIKPDDIVVLKGS 442


>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 460

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 214/447 (47%), Gaps = 27/447 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR ++P   F  I G   DGHDFI  AV  GA   +   D      +  +P  
Sbjct: 26  VTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTAGAVATLWAEDHQERRPA-DLPSI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + L AL KLA     +    ++AITGS GKTTTK+M    L +         ++NN 
Sbjct: 84  LVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLEAEYNVVKTKANFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+  M  + +  + E+GM   G++ FL+ LV+P IAVIT I  AH+  F   E I
Sbjct: 144 LGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRERI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL++ G    N D+    LL+ ++  L ++  Y FG   + D      +  
Sbjct: 204 ADAKMEITDGLKEDGCFVFNGDEP---LLEQRAKDLNVEQ-YRFGLKADNDVSASDIQGT 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +  +  L  ++  V    +G +   N L  + +      D+    +AL  F   + R
Sbjct: 260 DTSTMFKTNLDEETT-VTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKNR 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +       +   + +   YN+NP + +A +   + ++   EGRR+ VLGDM E+GE + 
Sbjct: 319 TEWLTGKKGERILSDV---YNSNPTAARAVLDSFANVNT--EGRRLVVLGDMLELGENAD 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH----VHYSET------MDGLFL 435
             H  LAE L+    + V+L G H+ AL+  L    I+    VHY ET       D L  
Sbjct: 374 QMHASLAEKLNAKRFAQVYLIGPHMKALEKRLIDEDIYSKDAVHYYETGELKRLTDDLST 433

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            IQ++    D +++K+S+      +++
Sbjct: 434 EIQAN----DSILLKASHGIHLENVVD 456


>gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 452

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TA+KA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAVKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ HI
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHI 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 453

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 220/448 (49%), Gaps = 25/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF+  AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320
                 S+  V   G   EV V  GI   M Q+ +      + L+ ++  ++  +   + 
Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E
Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S + H  + E  + +    V   G     + D         + + M  +   I+  
Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V++VK +NS G  ++   L E+F
Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 378

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 188/375 (50%), Gaps = 38/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL------VVVNTDMVASIGS 80
           +NG++IDSR+I     F   KG + DGH F+  A++ GAG         +N D+      
Sbjct: 26  INGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDIEG---- 81

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
              P+  V+D L AL  LA A        +IA+TGS GKTTTK+M+   L++  K     
Sbjct: 82  ---PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLTTEFKVKKTQ 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ +  P IAVIT I  +H+ + 
Sbjct: 139 GNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E IA AK+EI  GL++ GT   + D+    LLK+    L    + S G   +     
Sbjct: 199 GSREGIAKAKSEITIGLKENGTFIYDGDEP---LLKSHLEQLNKARLISVGLGNSNTL-- 253

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAI 314
                C      +++ +G +  +          +G H  +N  + + I   L    +T  
Sbjct: 254 ----VCHVD---DIETEGIAFTINDKESFTLPILGTHNMKNATIAIAIGHELGLSYETIK 306

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             ++       R +R++   N    T+I+++YNA+P SMKAAI  LS +    EGR+I +
Sbjct: 307 DNINHVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM----EGRKILI 359

Query: 375 LGDMCEMGELSQSFH 389
           L D+ E+GE SQS H
Sbjct: 360 LADVLELGENSQSMH 374


>gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20]
 gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae
           Rd KW20]
          Length = 457

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 208/429 (48%), Gaps = 25/429 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+S+P  
Sbjct: 25  VEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+  
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSA 252

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +     S+ S   +      +E+    +G H  +N L    +   + A + T +KA  + 
Sbjct: 253 KNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNALAATALAMNVGATL-TDVKA-GLE 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + +G+ +   +      L+D++YNAN  S+ AAI VL       +  RI  +GDM E
Sbjct: 311 QRSQVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKGY----DAFRILCVGDMKE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE S + H ++ + ++L N+  V   G     + +A+        +E +D L   I++ 
Sbjct: 366 LGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVPLIENQ 425

Query: 441 LVDGDVVVV 449
           L     VVV
Sbjct: 426 LQQNKKVVV 434


>gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 456

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 30/386 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR IAP + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 26  DGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+     R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +  +L +PH+ +IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVNLTKPHVVIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260
           G E I  AK EI EG+E +GT  LN +D  F + + ++    I T      + +    +L
Sbjct: 197 GPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGEL 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +      M   L   S +V  + +G H   N L        L   ++  +  L+  
Sbjct: 257 SRDARGCPSFTMASPL--GSAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR       +      +ID++YNANP S+ AA+ +L+  +    GR + VLGD+ E
Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367

Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401
           +GE ++  H D+      +V +LY +
Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393


>gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
 gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
          Length = 481

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 212/452 (46%), Gaps = 47/452 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-------GSLSIPV 85
           DSR +     F  +KG  +DGHD++  A + GAG+++VN D  A +        +++  V
Sbjct: 37  DSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAIDDARAMNTSV 96

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V   L A+ +LA           I ITGSVGKTT K+M+   L S   TY   G++N+
Sbjct: 97  ISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLPSAMNTYKTKGNFNS 156

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLT   MP D    +FELGM   GEI  L+ ++ P +A+IT I  +H+      E 
Sbjct: 157 LIGLPLTALSMPRDTSLCVFELGMDAKGEIDRLSEIIAPDVAIITKIGVSHVERLGSREN 216

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I  AK+EI   ++  GT+ L  D+   E    K +  G   +        A      +  
Sbjct: 217 IFRAKSEIVNHIKPGGTLILGVDED--EQYLKKENFTGNFNVIEVTAKHYAGVDSNTYCV 274

Query: 266 CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFH 321
            + +  ME    +  G   E +   I  H   N L   L I   L  D+D       +  
Sbjct: 275 ENVRDDMEGIRFEFSGGGYEKIPVTINTHGIHNALNAGLAIACGLQFDID-------LES 327

Query: 322 PKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            KEG        KR      +G  T ID+SYNA+P SM +A+ VLSQIS   +GR +AVL
Sbjct: 328 IKEGLKNVNFTAKRLEIK-EKGGITFIDDSYNASPESMSSALRVLSQIS---KGRMVAVL 383

Query: 376 GDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
           GDM E+G+ S+ FH         + + E++++      ++ GF   A  +     + + +
Sbjct: 384 GDMNELGKDSEDFHKRIGRLVFDLGIEELIAVGEKGRGYIEGFSEAAEIEGKKNDVQIVW 443

Query: 427 SE----TMDGLFLFIQSSLVDGDVVVVKSSNS 454
            E      D  F  I     +GD V++K+SN+
Sbjct: 444 IEDSKKCRDACFKHIS----EGDWVLLKASNA 471


>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
 gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
          Length = 454

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 216/457 (47%), Gaps = 38/457 (8%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++++A++G S G      V  IS D+R+I     F A+KG ++DGHDF   A++ GA  V
Sbjct: 8   EIIEAVRG-SYGYPANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKAMELGAIAV 66

Query: 69  VVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATI--IAITGSVGKTT 121
           V              PV G     VD    AL  L  A+  RSK  I  + ITGSVGKTT
Sbjct: 67  VTER-----------PVDGARCLIVDSTAQAL--LDSASYYRSKFDIPLVGITGSVGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   LS   KT     ++NN +G+P TL  +       + E+GM+H GEI  ++  
Sbjct: 114 TKEMIYSVLSRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMSTS 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I VIT I  +H+ N    E I  AK EI +G      + L  DD       AK+  
Sbjct: 174 CKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDDKLL----AKAEI 229

Query: 242 LGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            G + ++ +  S K+ D         S+     +  + + +    + +G H  +N L   
Sbjct: 230 YGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARINCLGEHNVKNALAAF 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +    + +  I  L+ F P+   G R       G  T + + YNA P SMKA++SVL
Sbjct: 290 CAGAAAGMENEDIIAGLADFRPE---GMRQNIITENG-MTFVLDCYNAAPDSMKASLSVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALK 415
           SQIS    GRR AVLGDM E+G+ +  +H  + E +       +   G +       A  
Sbjct: 346 SQISVR--GRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKNSTYYIEGACD 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               R    H+ E+ + L  +++++L +GD V+ K S
Sbjct: 404 KGFDRENTKHF-ESHEELVEYLKANLKEGDAVLFKGS 439


>gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri DSM 4166]
          Length = 458

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 212/446 (47%), Gaps = 34/446 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+I P + F A+ GP +DGH ++     KGA   +V  ++  +     +P   V 
Sbjct: 28  VSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVAREVEGA----PLPQLVVA 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL +L    R   K  + AITGS GKT+ KEML   L S        A  G+ NN 
Sbjct: 84  DTRLALGRLGALNREAFKGPVAAITGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNND 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G PLTL  +  +    + ELG S +G+I +   LVRP +++IT    AH+  F G E+I
Sbjct: 144 LGAPLTLLELSAEHRSAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--W 263
             AK EI +GL  TGT  LN DD  + +   +   +  K I SFG  +  ADF      +
Sbjct: 204 VQAKGEILDGLSATGTAVLNRDDKAYPIWAER---VAGKRIVSFGLDNPPADFSAGSIAY 260

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q    +++     G ++ V  + +G H   N L        L    +  +  L    P 
Sbjct: 261 DQRGCPNFVLTGPLG-NLRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPV 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR      A       LID+SYNANPAS+ AAI VL+  +    GR I VLGDM E+GE
Sbjct: 320 KGRAVAQMLANG---VRLIDDSYNANPASICAAIDVLASFA----GRTILVLGDMGELGE 372

Query: 384 LSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            ++  H D+      +V +LY +  +     H +A      R    H+ +    L   ++
Sbjct: 373 WAEQGHRDVGAYAAGKVDTLYAVGPLM---AHAVAAFGQGAR----HFPDQAS-LIESLR 424

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    G  +++K S S    ++++ L
Sbjct: 425 AEQGSGTTILIKGSRSAAMDKVVDAL 450


>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
 gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 209/449 (46%), Gaps = 26/449 (5%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G +  ++ D+R       F AIKG  +D HDF+  AV  G   ++V+  +   +  + + 
Sbjct: 22  GAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVTAGCSGLLVSQRLPVEVSQVVVA 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                D   AL +LA   R RS+A I+A+TGS GKT+ KEM    L    +T    G+ N
Sbjct: 82  -----DTRIALGQLAAWVRQRSEARIVALTGSSGKTSVKEMTAAILRQCGETLYTAGNLN 136

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVPLTL R+     + + ELG +H  EI + T LVRP  A++  +A AHL  F  + 
Sbjct: 137 NDIGVPLTLLRLKPQHQYAVIELGANHQDEIAYTTDLVRPETALVNNLAAAHLEGFGSLA 196

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRK 262
            +A AK EIF GL   GT  +N D + +   ++  H    KT++ F   + A  DF    
Sbjct: 197 GVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQSALHG---KTVWRFSPDRQADSDFYASG 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++ +   +      ++V     G H   N L    +   + A +    + LS    
Sbjct: 254 VTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALAASALALSVGAPLSAVCQGLSTLKA 313

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR   +  AL+     L+D+SYNAN  SM AA  VL+++     G R+ ++GDM EMG
Sbjct: 314 VPGR--LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMIVGDMAEMG 366

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM----DGLFLFIQ 438
             +   H  +   +    I  V  +G     + DA    +  H+++        L L  Q
Sbjct: 367 AEAAECHRQVGNAIRHAAIDKVLSTGSLSHGISDA--SGVGEHFADKTALGARALELLAQ 424

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +    ++VK S S    +++ +L E+
Sbjct: 425 HQQI---TLLVKGSRSASMEKVVQILQEK 450


>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
 gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
          Length = 455

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 211/443 (47%), Gaps = 20/443 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S D+R +     F A+KG ++D HDF+    +KG   VV   + +    +  +P   
Sbjct: 24  DGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVA--ERIPE--NYPLPALI 79

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144
           V D   AL  +A   R      ++ +TGS GKTT KEM+     +        A  G++N
Sbjct: 80  VADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFKTAFGEDGRLATSGNFN 139

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVPLT+ RM  +    + ELGM+H+GE+ +L+ + +P + ++      H      + 
Sbjct: 140 NDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIAQPTVGLVNNAQREHQEFMQTVL 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A     +   L + GT     D+ + +L    +   G + I +FG  K+A     ++K
Sbjct: 200 AVAEENGTVIRSLPENGTAVFPADEPYSDLW---TRYAGARQIRTFGLGKDAKVS-GQYK 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                + + ++ +GKS  V     G H  +N L           D  T +K L  F P  
Sbjct: 256 NEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSAGIDWQTIVKGLEAFSPVH 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR ++ + A N     LID++YNANP S++AAI VL+++S    G+ I VLGDM E+G  
Sbjct: 316 GRLEK-KNAFNGAL--LIDDTYNANPDSVRAAIDVLAELS----GKGIFVLGDMGEVGND 368

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            + FH+++ E      ISH +  G        A   S   H+ + M+ +   ++  L   
Sbjct: 369 GERFHVEVGEYAKERQISHFFTFGEMARFASKAYGNSGR-HF-DNMNEMNAVLEQLLEPD 426

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
             V+VK S      R++N L+ +
Sbjct: 427 MTVLVKGSRFMKMERVVNQLMNK 449


>gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
 gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
          Length = 454

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 207/443 (46%), Gaps = 27/443 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA--GLVVVNTDMVASIGSLSIP 84
           VN ++ D+R I P   F A++G  +D HDF+  A   GA   LV    D   +       
Sbjct: 22  VNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVEHEQDCFDN------- 74

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D    L +LA     +     +A+TG+ GKTT KEM    L   + T A  G++N
Sbjct: 75  VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAATMLG--EGTLATNGNFN 132

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N +GVPLTL R+  +  + + ELG +  GEI + + L RP + ++T +  AHL  F  ++
Sbjct: 133 NDVGVPLTLLRLRAEHRYAVIELGANAPGEIAWTSSLTRPQVVLVTNVTGAHLEGFGSMQ 192

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKW 263
            IA AKAEIF G  + G   +N DDSF +    K+ A G+  +  S  +S  A   L   
Sbjct: 193 GIADAKAEIFTGCTQGGQAIVNNDDSFADFFAEKARAAGLTVVRVSMDESTRAGADLYAE 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                +   E  LQ     V+    G H   N LM    V  L A +   +  L+   P 
Sbjct: 253 NIVLHRDSAEFVLQPLGDAVLVPLPGAHQVSNALMACAAVRALGASLPQVLPRLAALKPV 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMG 382
            GR    + A   G  T++D++YNANP S++AAI  L +Q +P     ++ VLG+M E+G
Sbjct: 313 PGR-MHIQSA---GTGTVVDDTYNANPGSVRAAIDWLAAQPAP-----QMLVLGEMGELG 363

Query: 383 ELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
             + S    L E      I+  V ++G    A       +I   Y +  +    +    L
Sbjct: 364 PQADSLVEALGEYAQQAGIAGLVVMTGAAAAARGYGEAANIAKDYQQAAN----WSAPVL 419

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  V+VK S S G   ++ LL
Sbjct: 420 EQGGTVLVKGSRSAGMEAVVRLL 442


>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
 gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
          Length = 452

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/405 (32%), Positives = 203/405 (50%), Gaps = 50/405 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ I   +    P  F  G+S D+R+I     F  + G  +DGHD++  A+ KGA    
Sbjct: 7   LLKGIITKNNPSAPLSFT-GVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQ--- 62

Query: 70  VNTDMVASIGSLSIPV----------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                 AS+ + S+PV            V+D L AL  +A A   +++ T++A+TGS GK
Sbjct: 63  ------ASLWATSVPVPESLKNEDRLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT K++L   L+ +   Y   G+YNNHIG+PLT+  MP +    I E+GMS LGEI  L+
Sbjct: 117 TTVKDLLYATLAPLGSIYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P IAV+T I  +HL      E IA AK EI  GL+ TG +FL+ D+         S
Sbjct: 177 KLATPDIAVVTNIGESHLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLL------S 230

Query: 240 HAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHM 292
           H +  G++T+    ++K     L            E +  G S  +  H      IG H 
Sbjct: 231 HYVKEGVQTVGFSSENKIVIHDL------------EAREDGYSFTIDEHSYDIKLIGEHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N    + +   L    +   ++L      + R ++      Q    L++++YNA+P S
Sbjct: 279 VKNAAYAVSVALHLGLSPEQVARSLERVAISKMRLEKIE---GQKGALLLNDAYNASPTS 335

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           MKAAI  L +  P+ E +++AVLGD+ E+G   ++ H  +A+ ++
Sbjct: 336 MKAAIKTL-KAYPNYE-KKVAVLGDIYELGIDEEALHRSVADEIT 378


>gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 455

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 17/434 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +            +I
Sbjct: 21  QTVITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++
Sbjct: 78  AVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   
Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTR 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI + L + G    N D+    LL+ ++  L  +   +FG           +
Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAKKLD-QVKATFGFRDEDTVHATGF 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     +   +    +   +    IG H   N +  + +        +    +LS F P 
Sbjct: 254 KSYMHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPT 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +    +   + +   YN+NP +++A ++   Q+    +G RIAVLGDM E+G+
Sbjct: 312 ANRMEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGK 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438
            S + H  L++ L    I+ V+L G  +  L DAL     P  +H +  + MD +   ++
Sbjct: 369 NSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLK 428

Query: 439 SSLVDGDVVVVKSS 452
           + +   D+VV+K S
Sbjct: 429 NDIKPDDIVVLKGS 442


>gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
 gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
          Length = 457

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 208/429 (48%), Gaps = 25/429 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+S+P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+  
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSA 252

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +     S+ S   +      +E+    +G H  +N L    +   + A + T +KA  + 
Sbjct: 253 KNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNALAATALAMNVGATL-TDVKA-GLE 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + +G+ +   +      L+D++YNAN  S+ AAI VL       +  RI  +GDM E
Sbjct: 311 QRSQVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKGY----DAFRILCVGDMKE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE S + H ++ + ++L N+  V   G     + +A+        +E +D L   I++ 
Sbjct: 366 LGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVPLIENQ 425

Query: 441 LVDGDVVVV 449
           L     VVV
Sbjct: 426 LQQNKKVVV 434


>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/478 (30%), Positives = 217/478 (45%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +++  D++    G  +     G   G+S DSR+    E F  ++G  +DGHDFI  A
Sbjct: 1   MSAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRA 60

Query: 61  VQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +++G   +V                + +  V + L AL  LA   R R    +IAITGS 
Sbjct: 61  IKRGVRALVAAEAWWQRQNHQFPKDLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSC 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+ + L+S  +      + NN IG+P TL  +    +  + E+GM+H GEIR 
Sbjct: 121 GKTTTKEMIALVLASRFRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMNHFGEIRR 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP IAV+T +  AHL     +E +A AKAE+ +GL   G I  N DD   + L+A
Sbjct: 181 LAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADD---QRLRA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVHHGIGYHMAQ 294
             H    +T+ SFG    A  Q     QC    W    E++ QGK   +     G H   
Sbjct: 238 ALHHFKGQTL-SFGFDPGAQIQAGPPCQCG--VWGQRAEIRHQGKIWPLELQLPGRHQLY 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L    +   +AL  F    G   R +   +     + ++ YNANP SM 
Sbjct: 295 NALAAAAVGLALGLPAEQISQALGRF---AGLKHRSQMQCHTSGIHIFNDCYNANPGSMA 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VW---LSGF 409
            A+  L+ +    +GR +A LGDM E+G  +   H  L  + +   +    VW       
Sbjct: 352 MALQTLASLK--NQGRAVAALGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSV 409

Query: 410 HVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              AL   +P S   +   ++E  D     I+     GD ++VK S      +L+  L
Sbjct: 410 RQGALAAGMPHSRIYLVASHAEGAD----IIRGFCRPGDTLLVKGSRGATMEKLLACL 463


>gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 46P47B1]
          Length = 494

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 207/465 (44%), Gaps = 61/465 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QAIQG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQAIQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPIMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         S+ V    IG H   N L        L   ++   K L    P +G
Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +
Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
              H  L   L+L  I HV   G H+     A+   +SI  HY++
Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTATAINEQKSIARHYTD 453


>gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes sp. HGB5]
          Length = 414

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 198/437 (45%), Gaps = 38/437 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA+ G  +DG+ F   A+ KGA  VVV+ D  A  G  ++ V    
Sbjct: 14  ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVD-DPAAVSGDRTVLV---G 69

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R      I+AI+GS GKTTTKE+++  L+   + YA  G+ NNHIGV
Sbjct: 70  DTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNNHIGV 129

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M  D +FG+ E+G S  GEI  L  +  P+  ++T I  AHL  F G E I   
Sbjct: 130 PLTLLAMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNIGRAHLEGFGGPEGIRRG 189

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+ + L    G  F+  +D     + A+   L  +                       
Sbjct: 190 KGELLDYLAANGGRAFVPREDQTLTNMAAERDGLAAE----------------------- 226

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V L      + HH  G +   N+   + +      D +    A+  + P   R +
Sbjct: 227 --YYSVTLADG---IAHHLEGDYNRFNIAAAVAVGRYFDIDGERIRHAVGSYMPDNNRSQ 281

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     N    TLI + YNANP+SM+A++         G  RR+ +LGDM E+G  S+  
Sbjct: 282 RTETERN----TLIVDCYNANPSSMRASVLNFLAEPAGGRSRRVLILGDMLELGAWSEQE 337

Query: 389 HIDLAEVLSLYNISHVWL-SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H D+  + +    + + L  G    A     P+  +     + + L   ++   V+   V
Sbjct: 338 HRDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSREELIAELRRRPVENAFV 397

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK S   G  + +  L
Sbjct: 398 LVKGSRGIGLGKALEEL 414


>gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella kingae ATCC 23330]
          Length = 454

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 186/362 (51%), Gaps = 20/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR     + F A+ G ++D HDF+   + KGA  +V   D V   G L     
Sbjct: 24  INRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALVSRDDFVGVSGCLK---- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD L AL KLA A R      +  ITGS GKTT KEMLT  L          A  G++
Sbjct: 80  -VDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLTTVLREKFGADAVLATAGNF 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL  +     + + E+GM+H GE+  LT + +P++A++     AH+   F+G
Sbjct: 139 NNHIGLPLTLLNLRESHRYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNG 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +++IA AK+EI++G+++ G   L  DD+   + +A    LG++T  +FG ++  D     
Sbjct: 199 VDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQAACKDLGLQT-QTFGFAQ-GDIHAEN 256

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K     S  ++    + + +     G H   N      +            + L+ F  
Sbjct: 257 VKLQPLVSEFDLVQGSERVHITLPVAGKHNVSNACAAATLALAGGVKFTEIARGLANFAN 316

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEM 381
            +GR +      N    T++D++YNANP SMKAA+ VL+++ +PH     + V+GDM E+
Sbjct: 317 IKGRLQVKHGIKNS---TILDDTYNANPDSMKAALDVLAKMPAPH-----VFVMGDMGEL 368

Query: 382 GE 383
           GE
Sbjct: 369 GE 370


>gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 452

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TAIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
 gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
          Length = 449

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 17/402 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVF 86
           G+S D+R I P   F A+KG ++DG+ F   A+  GA   +V+   VA     S +    
Sbjct: 20  GVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTDRCL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL  LA   R      +I +TGS GKTTTKE++   LS     YA  G+ NNH
Sbjct: 80  LVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNLNNH 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +    +  I E+G +H  EI FL  +  P   +IT I  AHL  F GIE +
Sbjct: 140 IGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGLITNIGKAHLEGFGGIEGV 199

Query: 207 ASAKAEIFEGLEKTG-TIFLN-YDDSFFELLKAKSHALGIKTIYS---FGKSKNADFQLR 261
              K E+++ L +   T+F+N  D +   + + +  ++  +T ++   F  + N D    
Sbjct: 200 RIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTFAEAIFYPAANPD---E 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +      +S + V       E+  H  G +   NML  L I        + A +A++ ++
Sbjct: 257 ETTTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGVSPEEANRAIADYN 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R ++    + +G  T++ ++YNANP+SM AAI    Q +     R+  +LGDM E+
Sbjct: 317 PTNNRSQQ----VIKGTNTVLLDAYNANPSSMAAAI---QQFAATPAKRKAVILGDMYEL 369

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           G+ S++ H  L ++++  N   V L+G  +    + LP++ +
Sbjct: 370 GDESEAEHAALGKLIAESNFDLVILAGKDMRFALEYLPKAYY 411


>gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
 gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
          Length = 463

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 207/437 (47%), Gaps = 16/437 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R++   + F A++G  +D HDF+  A  +    +VV     A    + +P   V 
Sbjct: 37  VSTDTRTLDAGDLFIALRGERFDAHDFLAQAEARQPCAMVVEKFNPA----IQLPQLVVA 92

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL ++A   R      ++AITGS GKTT K ++   L    +T A  G+ NNHIGV
Sbjct: 93  DSTLALGQVAALNRSLFTGPLVAITGSSGKTTVKTLVASILGECGETLATRGNLNNHIGV 152

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +     F + E+G S   EI +   L +P +A+I  + PAH+  F  I  +A+A
Sbjct: 153 PLTLLELEERHQFAVIEMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSIAGVANA 212

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+EI+ GL   G   +N DD+F    +      G KT+     + +A+ +    +  SE 
Sbjct: 213 KSEIYGGLVTGGIAVVNIDDAFAP--QWIQQLAGKKTLTVSLANPDANCRAEAIEYASEH 270

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              ++ +  + + ++ +  G H  +N LM       L A ++   + L+ F P  GR  R
Sbjct: 271 LAFDLLIHRQRLRIILNAQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPVAGRMSR 330

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R   N     +ID+SYNANP S++AAI VL+Q         I VLGD+ E+GE +   H
Sbjct: 331 QRGIHNA---LIIDDSYNANPGSVRAAIDVLAQAEDS-----ILVLGDLAELGETATEQH 382

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L +     +I+ ++  G                H++E    L   I   L  G  V+V
Sbjct: 383 AALGDYAKQKHINRLFTLGVLTANTSSHFGEGAQ-HFTERNQLLAALI-PLLTSGTTVLV 440

Query: 450 KSSNSCGFYRLINLLLE 466
           K S S     ++  L E
Sbjct: 441 KGSRSSKMDLVVRELCE 457


>gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 452

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TAIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 456

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 206/424 (48%), Gaps = 55/424 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + P+ TF +LL  +    +G       +G+S DSR I   + F A+ GP +DGH+++   
Sbjct: 2   LKPM-TFAELLVPLDARRVG--GDCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------LGALNKLAVAARLRSKATIIAIT 114
             KGA   +V  ++  +    ++P   V D       LGA+N+ A   +      + A+T
Sbjct: 59  AAKGAVGALVEREVEGA----TLPQLVVLDTRKALAQLGAMNRNAFVDK-----PVAAVT 109

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GE
Sbjct: 110 GSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGE 169

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +   L +PH+A+IT    AH+  F G ++I  AK EI EGL+ TGT  LN +D  F +
Sbjct: 170 IAYTVSLTKPHVAMITNAGSAHVGEFGGPDKIVEAKGEILEGLDATGTAVLNLEDKAFPI 229

Query: 235 LKAKSHALGIKTIYSFGKSKNA------DFQLRKWKQC------SEQSWMEVQLQGKSME 282
            + ++   G + + +F  +  A      D   R  + C      S     +VQL      
Sbjct: 230 WRKRA---GNRAVLTFALADTAADLYASDLS-RDARGCPGFTLNSPLGKAQVQL------ 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              + +G H   N L        L   ++  +  L+   P +GR       +      +I
Sbjct: 280 ---NLLGAHNVTNALTAAAAACALGVSLEGIVTGLNNVQPVKGRAV---AQIASNGVRVI 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEVLS 397
           D++YNANPAS+ AA+ VL+  +    GR + VLGD+ E+G+ ++  H ++      +V +
Sbjct: 334 DDTYNANPASINAAVDVLTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSA 389

Query: 398 LYNI 401
           LY +
Sbjct: 390 LYAV 393


>gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 456

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   
Sbjct: 26  DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   +      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI F   L +PH+A+IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELASEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
           G ++I  AK EI EGL  +GT  LN +D  F + + ++   G + I +F      AD   
Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253

Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  + C      S     +VQL         + +G H   N L        L   +
Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L+   P +GR    + A N     +ID++YNANPAS+ AA+ +L+  +    GR
Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFT----GR 357

Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
            + VLGD+ E+GE ++  H D+      +V +LY +
Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393


>gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 468

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 210/440 (47%), Gaps = 49/440 (11%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89
           ID R   P   F A  G H DGHD+   A + GA         VA +GS   ++P   VD
Sbjct: 26  IDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGA---------VAVLGSRPTTLPTVVVD 76

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL +LA  V A LR   T++AITGS GKT+TK+M+   LSS   T A  GS+NN +
Sbjct: 77  DAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKDMIEAVLSSAAPTVATSGSFNNEL 136

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R      F + E+G  H+G+I  LT LV P IAV+T +  AHL  F   E IA
Sbjct: 137 GVPLTMLRADATTRFLVLEMGARHIGDIAELTGLVAPDIAVVTNVGQAHLGEFGSREAIA 196

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265
            AK+E+  GL   GT  L+ DD     +      L    + +FG  + A  ++R     +
Sbjct: 197 VAKSELVRGLAGGGTAVLHADDPRVLAMS----DLTDGPVLTFGAGERAGVRVRDLALDR 252

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S+  ++    +  V    +G H A N              +  A  AL+       
Sbjct: 253 LGRPSFA-LRHDDATAVVTLPFVGAHWALNAAAAAAAGLAAGVGLGQAATALNTASI--- 308

Query: 326 RGKRYRCALN--QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              ++R  L    G  TL+++SYNANP S +A +  L+ I      RRIAVLG+M E+GE
Sbjct: 309 --SKWRMELRALSGGATLLNDSYNANPESTRAGLDALAAIEAR---RRIAVLGEMLELGE 363

Query: 384 LSQSFHIDLAE--------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            S+  H ++          VL++   + V   G    A+  ALP       +  +D    
Sbjct: 364 TSRDAHHEIGTYAATRADLVLTVGEAAAVIADGAGAKAV--ALP-----DNAAAID---- 412

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
           +++S L  GDVV+VK S   
Sbjct: 413 WLRSHLAPGDVVLVKPSRGA 432


>gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
          Length = 450

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 205/442 (46%), Gaps = 22/442 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R +     F A+KG  +DGHDF   AV  GAG ++V+  ++     +  P   V 
Sbjct: 24  VTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAGALLVSKRLL-----VGAPQLVVK 78

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL + A   R +  A ++A+TGS GKT+ KEM    L    K     G++NN IGV
Sbjct: 79  DTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGKVLYTAGNFNNDIGV 138

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 139 PLTLLRLTPEYDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267
           K EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF     +   
Sbjct: 199 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFAPQAAEDIDFYATDVQITP 255

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +   +     ++ +     G H   N L    +   + AD+    + L       GR 
Sbjct: 256 QATHFTLHSPFGTVAIELPLPGRHNIANGLAAAALAMSVGADLAAVRQGLMQLQAVPGR- 314

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             +   L  G   L+D++YNAN  SM AA  VL+++     G R+ V+GDM E+G+ +  
Sbjct: 315 -LFPIQLAAGKL-LLDDTYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGDTAID 368

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGD 445
            H  + E      I  V   G     L DA     H      +      L  +  ++   
Sbjct: 369 CHRQVGEAAKQAGIDKVLSVGTLSQTLSDASGNGEHFQDKSALAARVSELLSEHPVI--- 425

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
            V++K S S     ++  L E+
Sbjct: 426 TVLIKGSRSAAMENVVRALQEK 447


>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
 gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 222/471 (47%), Gaps = 35/471 (7%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++ +A  G  +G   +    + G+  DSR I     +    G   DGHDFI     
Sbjct: 4   MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQVFD 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +   D+    G    P   V+ V  AL  +A   R +    II ITGSVGKT+T
Sbjct: 64  KGALCTLSEKDLNNPKG----PYIKVESVATALKDIAEFYRKQLSCKIIGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L    K     G+YNN IG PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 120 KEIIASVLEEKFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMHRLAKVS 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHA 241
           RP + VIT I   HL N    + +  AK E+F+   K   + LN DD     +K    HA
Sbjct: 180 RPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVKEVNGHA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                ++ FG   + D    K++    Q + ++++   K ++ V    GYHM  N +  +
Sbjct: 240 ----PVF-FGIDTDRDVMAIKYESLGIQGTKVKIKYFDKELDTVIPIPGYHMIYNAMAAV 294

Query: 301 GIVSI--LTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            I S   +T D +D+ I+ L         G R       G  T+ID+ YNANP SMKA+I
Sbjct: 295 CIGSYFGMTLDEIDSGIRNLKAI------GGRNNIFTTNG-ITVIDDCYNANPMSMKASI 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +VLSQ +    GR++A+LGDM E+GE S+  H ++ +         V +        + A
Sbjct: 348 NVLSQAN----GRKVAILGDMFELGENSKKLHKEVGQAAVGKVDILVCIGNLSKDIAEAA 403

Query: 418 LPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  Y    ++  D L  +I+    +GD V++K+SN   F  ++  L
Sbjct: 404 IEGGCNTLYFPNKADFEDNLSAYIK----EGDTVLIKASNGMKFKTIVEKL 450


>gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 456

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   
Sbjct: 26  DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   +      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI F   L +PH+A+IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
           G ++I  AK EI EGL  +GT  LN +D  F + + ++   G + I +F      AD   
Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253

Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  + C      S     +VQL         + +G H   N L        L   +
Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L+   P +GR    + A N     +ID++YNANPAS+ AA+ +L+  +    GR
Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFT----GR 357

Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
            + VLGD+ E+GE ++  H D+      +V +LY +
Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393


>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 461

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 224/474 (47%), Gaps = 27/474 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++L+ ++  ++G+  +     +++  DSR  A    F+ IKG  +D H F+    + 
Sbjct: 7   TIGEMLEILETEAVGVPARTLKRKVNLCMDSRESAKGVVFWPIKGARFDAHQFVSQMEKD 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + VVN   +     +  PV   +D   AL KLA   +   K   +AITGS GKTTTK
Sbjct: 67  GALMSVVNQTAIDPNFKMYAPV---EDTTKALLKLAKGYQRLFKLKKVAITGSNGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    LS    T+A  G++NNHIGVP+TL ++    +  + E+G S   EIR L+    
Sbjct: 124 EMTKAVLSMKYNTHATKGNFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRPLSLATE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  +HL     ++ + + K  I  GL++ GT+ +N DD     +KA  H   
Sbjct: 184 PDIAVITNIGASHLERLGDLDGVFNEKINITAGLKENGTLIVNADDERLCKVKATKHY-- 241

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + +FG  +     +  KW +  C++               V +  G H   + L  +
Sbjct: 242 --KVVTFGVRRGVVKPEKLKWTENLCADFYVGRTHF-------VLNVPGDHNLYDALAAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L        KAL+ F     R +      N   F +I + YNANP+S K A+  L
Sbjct: 293 AVGQALRIPKGDIAKALAGFTSTSMRME----IKNANGFKVISDCYNANPSSTKMALQTL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALP 419
             +    EG+RIAVLGDM E+G+ S + H  +  ++   N   +   G      ++ A  
Sbjct: 349 GNMRV--EGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLLAVGKDAKKYVEGAKS 406

Query: 420 RSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           R + +V Y ET+  +   +   + +GD+++VK S      +++  LL   P  +
Sbjct: 407 RGMKNVQYFETVPEVISMLGEVVAEGDILLVKGSRGMHMEQVVEALLHMVPVFK 460


>gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 452

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSCPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRLVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TAIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 222/468 (47%), Gaps = 18/468 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P ++  +L  A  G  +G  P   + G+S D+R+I P   F A++G  +DGH ++  A  
Sbjct: 4   PRFSPDELAAATGGRWMG-APPAELAGVSTDTRTIVPGALFVALRGERFDGHAYLGEASA 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           K             +     +PV  V D L AL  +A   R R    ++ +TGS GKTTT
Sbjct: 63  K---GAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +EM+   L++        G+ NN +GVPLTL  +  +    + E+GM+H GEI  L  + 
Sbjct: 120 REMIAGILATRGPVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIARLAAIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P++ V+T  A AHL     ++ +A AKAE+++GL+ TG +  N DD    +LK ++ A 
Sbjct: 180 EPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDP--RMLK-RAQAA 236

Query: 243 GIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI--GYHMAQNMLM 298
           G + + ++ G  +  D  + +     +     V   G     VH  G+   ++       
Sbjct: 237 GKRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGLVGAHNAVNAAAA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +S+  +D + A + L+   P    G+R R         L+D+ YNANPASM AA+ 
Sbjct: 297 AAAAISLGCSDREIA-QGLAAVRPV---GRRLRLERLASGLRLVDDCYNANPASMSAALR 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDA 417
            L  ++   + R +AVLGDM E+G   +  H +L    +   +  +   G       + A
Sbjct: 353 TLVDLA-RPDARAVAVLGDMLELGAFEEPAHRELGGEAARAGVRLLAAFGPRSRATAEAA 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLL 464
               +   +++ MD L  + +++L    DV++VK S      RL+  L
Sbjct: 412 RAAGLETFHTDDMDALVRWARTALAPPSDVLLVKGSRGMKLERLVEAL 459


>gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
 gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
          Length = 453

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 219/451 (48%), Gaps = 31/451 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G+     L     TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKGRVDMAPLRDD-ITLIDDSYNASVPAMKAAVELLGSFS----AVRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G     + D        H+  T   +  FI+  +
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL----CQGHHFATHQDMMTFIEQHI 421

Query: 442 VD----GDVVVVKSSNSCGFYRLINLLLEEF 468
                   V++VK +NS G  ++   L E+F
Sbjct: 422 EQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 452

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRLVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TAIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
 gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
          Length = 453

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 218/465 (46%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L  A+    IG   Q  ++ ++ D+R I     F A+KG  +D HDF   AV+ G+
Sbjct: 5   SLQTLADALNAELIGTDTQ--IDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGS 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   AL +L    R +  A ++ +TGS GKT+ KEM
Sbjct: 63  GALLVSKRL-----PVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + DF + E+G +H GEI + T L RP 
Sbjct: 118 TAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIEMGANHAGEIAYTTALARPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  ++ AHL  F  +  +A AK EIF+GL + G   +N D++ +   +   H L  K
Sbjct: 178 TALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVINADNNDWANWQ---HKLNGK 234

Query: 246 TIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F  +  +  DF           +   +     S++V     G H   N L    + 
Sbjct: 235 TVWRFSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLPVPGRHNIANALAAAALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A  +     L+     +GR   +   +++G  TL+D+SYNAN  SM AA  VL+++
Sbjct: 295 MSVGASPENVRAGLATLQSVKGR--LFPIVISEG-KTLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+  +GDM E+G  S+  H  + E +    I  V+  G     + D      H
Sbjct: 352 P----GYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRIISDVSGCGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           +   E    L   + S L +  V  V++K S S    +++  L E
Sbjct: 408 L---EDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
 gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
          Length = 453

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G+     L     TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKGRVDMAPLRDD-ITLIDDSYNASVPAMKAAVELLGSFS----AVRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G     + D         + + M  +   I+   
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               V++VK +NS G  ++   L E+F
Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus helveticus H10]
          Length = 455

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 203/431 (47%), Gaps = 17/431 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +            +I V 
Sbjct: 24  ITSVAFDSRKITTGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PKNITVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VD+ L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++NN 
Sbjct: 81  EVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   ++I
Sbjct: 141 IGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L + G    N D+    LL+ ++  L  +   +FG           +K  
Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFRDEDTVHATGFKSY 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   +    +   +    IG H   N +  + +        +    +LS F P   R
Sbjct: 257 MHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANR 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +  + +   + +   YN+NP +++A ++   Q+     GRRIAVLGDM E+G+ S 
Sbjct: 315 MEWEKGDVGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSP 371

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSL 441
             H  L + L    I+ V+L G  +  L DAL     P ++H +  + MD +   +++ +
Sbjct: 372 ELHAGLCDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDI 431

Query: 442 VDGDVVVVKSS 452
              D++V+K S
Sbjct: 432 KPDDIIVLKGS 442


>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Ruminococcus obeum A2-162]
          Length = 456

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 28/446 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR I     F  I G   D H FI   + KGA    + T     +     P  
Sbjct: 28  VSAITTDSRKIEKDCLFVPIVGERVDAHRFIPDVMAKGA----LATLSERELSDADYPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +   L A+  +A     + +  +I ITGSVGKT+TKE++   L    +T    G++NN 
Sbjct: 84  QITSSLQAVKDIAEFYLQQLQLPVIGITGSVGKTSTKEVIASVLKEKYRTLKTQGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLT+ R+  D    + E+G+S  GE+  LT + +P   VIT I   HL N    + +
Sbjct: 144 LGLPLTVFRLREDDQIAVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDRDGV 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----R 261
             AK EIF  +  +G I LN DD     ++      G+K ++ FG     D        R
Sbjct: 204 LKAKTEIFRSMLPSGHIVLNGDDDKLATVEGYH---GVKPVF-FGLDAKRDVYADQIVSR 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             K  S      + +   + +V+    G HM  N L    +  I    ++   + +    
Sbjct: 260 GLKGVS----CRIHMGEDAFDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIKRGIESLE 315

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR K     +    F ++D+ YNANP SMKA++ VL      GEGRR+A+LGDM E+
Sbjct: 316 TIRGRFK----MIETENFLVVDDCYNANPMSMKASLDVLHD----GEGRRVAILGDMGEL 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQ 438
           GE   S H ++ E  +   I      G   L + +A  ++     VHY +  + L   + 
Sbjct: 368 GENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEAARKADPDFEVHYEKDRESLLKNLG 427

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  GD ++VK+S+   F  +++ L
Sbjct: 428 GYVRKGDTILVKASHFMKFEEVVDAL 453


>gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 452

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+      TA+KA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAVKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa
           DSM 4126]
 gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa
           DSM 4126]
          Length = 436

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 219/441 (49%), Gaps = 27/441 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  DSR +     FFA+KGP+++G+ F   A+++GA  VV++          +I V   
Sbjct: 16  GICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNTILV--- 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L AL  LA   R +    I+ ITGS GKTT+KE++   L++  K +A  G+ NNHIG
Sbjct: 73  EDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL+L  +  D +  I E+G +H+GEI     + +P   +IT I  AH+  F G E I  
Sbjct: 133 VPLSLLSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLITNIGKAHIGEFGGFENIII 192

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K+E+F+ L+K  G  F+N  D+  + ++ + S+A+          ++  D QL+  K  
Sbjct: 193 GKSELFDFLKKNDGVPFINTQDAVLKNMEKRFSNAITF-------PNEGDDLQLKPEKGT 245

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +++    +G S  +  H +G     N+   L I       ++ AI+A   + P+  R
Sbjct: 246 ---AFLRYSTEGFS-HIDTHLVGQFNYLNVAAALCIGKYFEVTMEKAIEATQEYMPENMR 301

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +       +T++ ++YNANP SM+ A+  LS I        + +LGDM E+G+ ++
Sbjct: 302 SQMIKT----DNYTILLDAYNANPDSMELAMKSLSAIE---NTESVVILGDMLELGDTAE 354

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGD 445
             H  L E+     IS  +  G  +   + A  +     Y ET D L   + +  L  G 
Sbjct: 355 LEHEKLGELAVDLGISKRYYCGKQI---QSASKKDNFGKYFETKDELIEHLTAKPLKKGS 411

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
            +++K S       ++  L++
Sbjct: 412 TILIKGSRKNALEEIVPFLVK 432


>gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis CO72]
          Length = 494

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 152/466 (32%), Positives = 208/466 (44%), Gaps = 63/466 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     + + + I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WHQDNLKQATQGQWHHSDK--AEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    R R +A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGDLG---RFRREAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIY-SFGKS----KNADFQLRKWKQCSEQSWMEVQLQG------------- 278
             S       +Y SFG+     + A  +         +    V + G             
Sbjct: 239 QASK---FTNLYLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATH 295

Query: 279 --------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                          S+ V    IG H   N L        L   ++   K L    P +
Sbjct: 296 STFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPK 355

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR  R    L    + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ 
Sbjct: 356 GRLMR----LPMDGYCIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDA 407

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
           +   H  L   L+L  I HV   G H+     A+   + I  HY++
Sbjct: 408 ADDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTD 453


>gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 456

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  ++    +P   V
Sbjct: 27  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGAV----LPQLVV 82

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 83  LDTRKALAQLGAMNRNAFLDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260
            + I  AK EI EGL+  GT  LN +D  F + + ++   G + + +F  S + AD    
Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALSDSAADVYAS 254

Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              R  + C      S      VQL         + +G H   N L        +   ++
Sbjct: 255 ELSRDARGCPGFIINSPLGTARVQL---------NLLGTHNVSNALAAAAAGCAMGVPLE 305

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L+   P +GR       +      +ID++YNANPAS+ AA+ +L+  +    GR 
Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIVSNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358

Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
           + VLGD+ E+G+ ++  H ++      +V +LY +
Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393


>gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
 gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
          Length = 458

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 215/448 (47%), Gaps = 19/448 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSL 81
           P+  V  +  DSR + P + FFA+ G  +DGH+FI     KG A +V   T M   +   
Sbjct: 22  PETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVAERTRMTGKMPEC 81

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + V  VD+   AL +LA   R   +  IIA+ GS GKT+TKE+L   L     T     
Sbjct: 82  GVIV--VDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELLAGVLKKRLNTLWSEA 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           S+NN IGVP TL R+       + E+G +H GE+  L  +++P   +IT+I   HL  F 
Sbjct: 140 SFNNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVSMIQPKFGIITSIGREHLEFFG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A  +  + E L   G +FLN D  + + +  ++ A    T+   G     D+++ 
Sbjct: 200 DVAGVADEEGWLAELLPADGKLFLNGDSDWTKQIARRTRA----TVVRVGFGAGNDWRVT 255

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             K   +    +V    KS+   +    +G H A N    L + + L    D   + LS 
Sbjct: 256 DAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATFALAVGAELGLTRDHLEQGLS- 314

Query: 320 FHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
               + +  + R  L N     +ID++YNAN  SM AA++ L ++     GRR+AVLGDM
Sbjct: 315 ----DCKSAKMRLQLSNWNGICVIDDAYNANADSMLAALNTLQEMPCV--GRRVAVLGDM 368

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLF 436
            E+G  S++ H ++   ++   ++ ++  G    A+  +   +     SE  D       
Sbjct: 369 AELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSARDAGLAEASEFDDVPAAAAA 428

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +++ L  GDVV++K+S S    RL  +L
Sbjct: 429 VKNFLKAGDVVLLKASRSTRLERLFEML 456


>gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 454

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 21/447 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R+I     F A+ G  +D H+F   A + GAG ++V   +      ++ P  
Sbjct: 24  IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRL-----DVNAPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA       +   +AITGS GKTT KEM+   L          G++NN 
Sbjct: 79  VVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  IE +
Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
             AK EI++GL+  G   +N D +   L ++    L  K + +F   +  ADF       
Sbjct: 199 KQAKGEIYQGLQAGGIAIVNLDSNGDTLWQS---VLADKKVITFSHNNSQADFYASNVTM 255

Query: 266 CSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             E      + +    + +E+    IG H   N +    I   + A V+     L   + 
Sbjct: 256 NEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASIIALHMGATVEEIQFGLLNLNK 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    + +       LID+SYNA+  +MKAA+ +L        G+R  +LG+M E+G
Sbjct: 316 VKGRVDVEQLS---STIKLIDDSYNASVPAMKAAVDLLGAF----RGQRWLILGNMAELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSL 441
           E S + H  + E  +     HV   G     + + L   IH   + E +D +   +  ++
Sbjct: 369 EESLALHRQVGEHAAPQKFEHVLTYGADAKIISE-LCHGIHFETHQEMIDYIKQHLDQTV 427

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            D   ++VK +N    + +   L E F
Sbjct: 428 SDQHTILVKGANGARMFEVAAALKEYF 454


>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
 gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
          Length = 444

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 210/453 (46%), Gaps = 45/453 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R+I P   +FA+KG  ++G+ F   A+ KGA   V++ D    I   ++ V   
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVID-DPAYHIADKTLLV--- 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L +LA   R + K  +I ITGS GKTTTKE++   LS      A  G+ NN+IG
Sbjct: 70  DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H GEI FL  +  P    IT+I  AHL  F   E +  
Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ L+    TI  N D+   E L    +      +YSFG  +  +  +    QC 
Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLENYN-----NVYSFGVGEGVNVSV----QCL 240

Query: 268 EQSWMEVQLQGKSMEVVHHG-------------------IGYHMAQNMLMTLGIVSILTA 308
               +++Q    S++    G                   +G +   N+  ++        
Sbjct: 241 STQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                 K +  + P+  R +     L  G  T++ ++YNANP+SM AAI  L  +S +  
Sbjct: 301 STKAIQKGIESYIPQNNRSQ----LLQWGSNTVLLDAYNANPSSMTAAIDNL--LSMNSF 354

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
             ++ +LGDM E+G+ +   H  + + L+ +  + V+L G +    K   P+       E
Sbjct: 355 PNKVLILGDMFELGDYATQEHQSIVDKLTEHQWAGVYLIGKNFKQTKAPYPQ------YE 408

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           T +      ++      ++++K S      RLI
Sbjct: 409 TFEEFREVFKNLSFQDSLILIKGSRGMALERLI 441


>gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
 gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
          Length = 513

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 218/469 (46%), Gaps = 40/469 (8%)

Query: 27  VNGISIDSRSIAPQE----AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           ++ + IDSR+I        AF A+KGP++DGH F    +++G  L++V+  + A   +  
Sbjct: 33  IDDLVIDSRAIKEHSDKCSAFLALKGPNFDGHRFAEQVIKQGCQLLIVDHHLSAVTDTAQ 92

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + V    D   AL K+A   +       + ITGS GKTT KEM+   LS + K  A  G+
Sbjct: 93  LIV---SDTRIALGKIAAFVKKEVAPKTVGITGSSGKTTVKEMVAAILSRLGKVLATNGN 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+    DF + E+G +H+GEI + T L +P +AVI  IA AHL  F  
Sbjct: 150 FNNDIGVPLTLLRLDNSHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGD 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +  +A AK EIF GL + G    N D  +    + +   L  KT+ +F     A+    K
Sbjct: 210 LCGVARAKGEIFSGLGENGVALYNKDTKYTSKWQWR---LTDKTVRTFSCVNKANCYSEK 266

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                +       LQ +    V      G H   N +    I     A ++     L+  
Sbjct: 267 VS-LDKNGCASFTLQSEQGSCVMTLTVPGKHNVCNAVAAAAIALEFGASLEDIQLGLAQM 325

Query: 321 HPKEGR-------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            P +GR        K+  C +      LID+SYNAN  S KAA  +LS       G+++ 
Sbjct: 326 QPVKGRLNLHQLENKKTGCNVK-----LIDDSYNANLESAKAAAQLLSSYP----GKQLL 376

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----VHYSE 428
           +LGDM E+G  ++S+H ++        ++ +   G    +  DA  +  H      H+++
Sbjct: 377 ILGDMGELGSEARSYHQEVGGFAKHLQLNTLLSLGVLSQSASDAFAKDNHKNDQSQHFNQ 436

Query: 429 TMD---GLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEFPAI 471
             D    LF  +   L  G     ++VK S S     ++  +++ F  +
Sbjct: 437 RADLMTHLFTMLSQQLSVGQQDIAILVKGSRSAHMEHVVTEIIDWFEQM 485


>gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 454

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 213/455 (46%), Gaps = 49/455 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     I   P  
Sbjct: 29  IEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFENGA---------VATFSEKEISGHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  +LA     + +  +IA+TGS GKT+TK+M+   L++  KTY   G+YNN 
Sbjct: 79  LVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+G  H+G+I  L+ +V+PHIAV+T I  AHL  F   E+I
Sbjct: 139 IGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIVQPHIAVVTLIGEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-----IYSFGKSKNADFQLR 261
           A  K +I +G+   G +    D      L      +         + S  +SKN+   LR
Sbjct: 199 AQGKMQITDGMNSHGILIAPGDPIIDPYLPENQMVIRFGENQEIFVNSIEESKNS---LR 255

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL--GIVSILTADVDTAIKALSV 319
                 EQ+ + + L GK          Y+    ML      ++++   D+  A++ + +
Sbjct: 256 FTTNVLEQA-LTLPLSGK----------YNAINAMLAAYVGKLLAVAEEDILEALEHIQL 304

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G    ++ A N     ++ + YNANP +M+  +   +QI P+  G++IA+L DM 
Sbjct: 305 ----TGNRTEWKKASNGA--DILSDVYNANPTAMRLILETFAQIVPNQGGQKIALLADMK 358

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSETM 430
           E+G  S   H  L + L+  +I H+   G  +  L     +   +            +  
Sbjct: 359 ELGPSSVDLHCQLIQALNPDDIDHLIFYGQDIEPLAQLASQMYPIGKVFFFKKTEAEDQF 418

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + L+  +Q  L   D +++K S+S     ++N LL
Sbjct: 419 EDLYHHVQEILGSNDQILIKGSHSMHLEEIVNRLL 453


>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 455

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 203/431 (47%), Gaps = 17/431 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +            +I V 
Sbjct: 24  ITSVAFDSRKITTGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENITVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VD+ L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++NN 
Sbjct: 81  EVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   ++I
Sbjct: 141 IGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L + G    N D+    LL+ ++  L  +   +FG           +K  
Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFRDEDTVHATGFKSY 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   +    +   +    IG H   N +  + +        +    +LS F P   R
Sbjct: 257 MHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANR 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    +   + +   YN+NP +++A ++   Q+     GRRIAVLGDM E+G+ S 
Sbjct: 315 MEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSP 371

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSL 441
             H  L++ L    I+ V+L G  +  L DAL     P ++H +  + MD +   +++ +
Sbjct: 372 ELHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDI 431

Query: 442 VDGDVVVVKSS 452
              D++V+K S
Sbjct: 432 KPDDIIVLKGS 442


>gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC7]
          Length = 494

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    IP   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVKCDIPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         S+ V    IG H   N L        L   ++   K L    P +G
Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +
Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
              H  L   L+L  I HV   G H+     A+   +SI  HY++
Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTD 453


>gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 427

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 211/442 (47%), Gaps = 37/442 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I     F A+KG ++D + F   A+ KGA  V+++     +     I V    
Sbjct: 16  VSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKDKMILVL--- 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    IIA+TGS GKTTTKE++ + LS      A IG+ NNHIGV
Sbjct: 73  DSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL     D D GI E+G +H  EI  L  +  P+   IT    AHL  F GI+ +  A
Sbjct: 133 PLTLLSFDEDTDIGIVEMGANHQKEIELLCSIAEPNFGYITNFGKAHLEGFGGIDGVIKA 192

Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  LE+   T F+N DD   E+   K+  +     YSF  +K +D ++        
Sbjct: 193 KSELYNYLEENKQTAFVNLDD---EIQNQKTMQI---MRYSFSIAKESDVKI----DFVV 242

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            + M V++  K M++  H IG + A N+   + I        D    A+  + P   R +
Sbjct: 243 ANPM-VEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIADDDIKDAIQNYIPTNNRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 N     +I ++YNANP+SM+AAI+   Q+       +IA+LGDM E+G  S   
Sbjct: 302 LIEKNSN----NIILDAYNANPSSMEAAITNFIQLKAKD---KIAILGDMFELGNDSLIE 354

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSI---HVHYSETMDGLFLFIQSSLV 442
           H  + E         ++++G  +      KD     I   ++H+ +T +      ++   
Sbjct: 355 HKKIIE---------LFINGPEIETYFIGKDFYCNKIEMKNIHFFDTYESFSKSFKTRKT 405

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             + +++K S      R + +L
Sbjct: 406 SKNTILIKGSRGMSLERTLEIL 427


>gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 190/386 (49%), Gaps = 30/386 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR IAP + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 26  DGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+     R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+ +IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260
           G E I  AK EI EG+E +GT  LN +D  F + + ++    I T      + +    +L
Sbjct: 197 GPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGEL 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +      M   L   S +V  + +G H   N L        L   ++  +  L+  
Sbjct: 257 SRDARGCPSFTMASPL--GSAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR       +      +ID++YNANP S+ AA+ +L+  +    GR + VLGD+ E
Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367

Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401
           +GE ++  H D+      +V +LY +
Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393


>gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 463

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 203/413 (49%), Gaps = 29/413 (7%)

Query: 6   TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++    +G  +G V  P   V+G+S D+R++     +  +KG  +DGH F + AV+ 
Sbjct: 4   TLREITHWTRGKLVGGVSDPHLLVDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + N + V       IP+  V+D L AL +LA   R   +  ++ ITGS GKTTTK
Sbjct: 64  GAAAALWNRE-VPLPKDPPIPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L++  + +   G+ NNHIG+PLTL  MP D +  + E+GM+H GEI  L+ +  
Sbjct: 123 DLTAAILATRYRVHRTQGNLNNHIGLPLTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAA 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++T I  AHL        IA AK EI EG+  TGT+ ++ D+       A      
Sbjct: 183 PDLALVTNIGEAHLEFLGSRGAIADAKLEIREGMPSTGTLIIDGDEPLLRERLAGEERPV 242

Query: 244 IKTIYSFGKSKNA---DFQLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           I+    FG+S +    D +L+      +   +  +  E  L GK           H A N
Sbjct: 243 IRV--GFGESNDDRILDLELKGRAGIAFTSSATDTRFETGLMGK-----------HNALN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+ +    +L    +T I+        EG G+R   +       ++D+SYNA+P +++A
Sbjct: 290 ALLGIQAARLLGL-TETGIR--EGLKGAEGSGRRLETSTASNGMLVVDDSYNASPTAVRA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AI  L+ +  + E  +  +LGDM E+G   ++ H ++        I  V+  G
Sbjct: 347 AIDWLTSLEDYEE--KWVLLGDMLELGVQEEALHREVGSYAVQQGIPRVFTLG 397


>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
 gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
          Length = 461

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 206/450 (45%), Gaps = 15/450 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V  +S +SR + P   F  I G   D H FI  A+  GA       +       L 
Sbjct: 22  PNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAACFTQQEPEEGFKYLD 81

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  V D   AL + A   R R    ++ +TGSVGK++TKEM+  ALS  K+ +   G+
Sbjct: 82  GAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKRVHKTAGN 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YN+ IG+PLT+  +    +  + E+GMS+ GE+  L+ +  P  AV+T I  +H+     
Sbjct: 142 YNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEMERLSAIASPTSAVVTNIGISHIEQLKT 201

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E I + K  I + + + G ++LN DD   + L+          I  +G   + D++   
Sbjct: 202 QENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRESYTG----KIVWYGMESDCDYRAVN 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + +  E+     + +++   +G H   N L  + +       +D     L  +  
Sbjct: 258 IDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAIAVAYDQGLTLDDIRCGLLTY-- 315

Query: 323 KEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            EG   R +   L++   T+ID+SYNA+P S+K+ I VL  +     G++IAVL DM E+
Sbjct: 316 -EGLAMRQQIHELDK--ITVIDDSYNASPDSIKSGIGVLMAVK--STGKKIAVLADMLEL 370

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQ 438
           GE S   H++L    +   +  V   G     + +      R I V    T D  F  ++
Sbjct: 371 GERSAQAHLELGAYAAASGVDAVLTVGREAEKIAEGAAEESRKILVKACGTNDEAFAELE 430

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             L DGD V+VK S       ++  LL ++
Sbjct: 431 KILNDGDCVLVKGSRGMHTDEIVQKLLTKY 460


>gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 377

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 193/396 (48%), Gaps = 50/396 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 7   SGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLV 62

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 63  VLDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 117

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F 
Sbjct: 118 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFG 177

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL 260
           G + I  AK EI EGL   GT  LN +D  F + + ++   G + + +F  + + AD   
Sbjct: 178 GPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRA---GDRNVLTFALTDSAADVYA 234

Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               R  + C      S      VQL         + +G H   N L        +   +
Sbjct: 235 SELSRDARGCPAFTLNSPLGTARVQL---------NLLGTHNVSNALAAAAAGCAMGVPL 285

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +L+  +    GR
Sbjct: 286 EGIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GR 338

Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
            + VLGD+ E+GE ++  H ++      +V +LY +
Sbjct: 339 TVLVLGDIGELGEWAEQGHREVGAYAAGKVSALYAV 374


>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 459

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 217/448 (48%), Gaps = 24/448 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           QG VN    D+R +     F  + G   DGHDFI  A  KGA L  ++   + ++   S 
Sbjct: 32  QGAVN----DNRKVEKDFLFIPMVGARVDGHDFIEDAFSKGA-LASLSERKLENV---SG 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V+D   AL ++A   R++    +I + GSVGKT+TKEML+  L++        G++
Sbjct: 84  PYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGKTSTKEMLSSVLATKFNVLKTEGNF 143

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+ R+  +    + E+G+S  GE+  L  + +P   V+T I   HL      
Sbjct: 144 NNEIGLPLTICRIKDEHQVAVVEMGISDFGEMHRLGDIAKPDYVVMTNIGQCHLEFLKSR 203

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + I  AK E+FE + K GT+ LN DD   +L+ A +  LG+  I+ +G +          
Sbjct: 204 DGILQAKTEVFEHMPKNGTVILNGDDD--KLINADT--LGLNKIF-YGLNGQEVSASDIV 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +    +   + L G+S E      G H   N L    +  +L    +   K L      
Sbjct: 259 AEGMTGTRAVINLFGESFEATIQLPGTHNVMNALAAAAVGKVLGLSNEEIKKGLEKASTI 318

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR       +     T+ID+ YNANP SMKA+I VL + +P   GR IAVLGDM E+G+
Sbjct: 319 AGRNN----VIEVRDITIIDDCYNANPVSMKASIEVLGK-AP---GRTIAVLGDMGELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSS 440
             +  H ++ + L   +I +V+  G     + ++L +   S   H+   ++ +   +   
Sbjct: 371 DERQLHYEIGQTLEDNHIGYVFTVGDLSEEINNSLSQKNSSCMAHHYTNVEAMLEDLLPI 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +  GD ++VK+S+   F  ++  +   F
Sbjct: 431 IRGGDTILVKASHFMNFSTVVEAIQTRF 458


>gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 469

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 192/399 (48%), Gaps = 44/399 (11%)

Query: 5   WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   LL+A QG+ +    P   +  I  DSR     +AF A+KG  +D H FI    ++
Sbjct: 14  WTAAQLLEATQGYWLNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V+  + A +  L +P     D   AL +L    R ++ +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVSQPIDAEVCQLVVP-----DTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS I  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + ++LV
Sbjct: 129 KEMLGSILSRIAPTLVTRGNLNNDLGVPVMLLELHPEHQYAVMELGASHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  I  AHL  F G + I  AK+EI+  +   GT  +   D F + ++    A+
Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIR---QAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV---VHHGI--------GYH 291
             + + SFG                E    E++LQ +S         G+        G H
Sbjct: 246 QTEQVLSFGAG-------------GEIFATEIELQAQSATFKLNTPQGVRQVNLPFAGEH 292

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANP 350
             QN          +   +D  +  L     ++  G + R   + QG   LID++YNANP
Sbjct: 293 NVQNATAAAAFALAIGISLDDIVLGL-----EQAVGAKGRLNFIQQGRHLLIDDTYNANP 347

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            SM+AA  VL+Q     EG R+ V+GD+ E+G  +   H
Sbjct: 348 TSMRAAAEVLAQ----QEGVRVMVMGDIGELGSSAAQQH 382


>gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
 gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
          Length = 440

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 216/438 (49%), Gaps = 30/438 (6%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGSLSIPVFGVD 89
           IDSR       F  +KG   DGHDFI  A++KG+   L  + TD    I         VD
Sbjct: 29  IDSRKAQKDSFFVPLKGSKADGHDFIDDALKKGSSGYLTSIETDYKNGIL--------VD 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL ++ +  R + K  +  ITG+ GKTTTKE+L   LS I + YA  G+YNN IG+
Sbjct: 81  DTLKALTEIGIFKRKKLKKAV-GITGTSGKTTTKEILRFLLSDIFRVYATEGNYNNEIGL 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL+ +P + + G+FELG S  G+I  L  + +P + V+T++   H+  F   E +   
Sbjct: 140 PLTLSNIPENTEVGVFELGASKRGDISKLVSISKPEVRVLTSVGHGHIEGFGSFEGVVQG 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EIF+G E +    L  D   + + + K +        +FG S  AD ++ +     E 
Sbjct: 200 KGEIFDGGEIS---VLPEDLKIYYMDRLKKYV-------TFGISDYADIKISEINITPEG 249

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   V  +   + +        +  N+   L ++  L  +   + + L  F   EGRGK 
Sbjct: 250 TAGTVSYKNDKIRITVPVYSRALFNNIAAALSVLYALDINPVRSAEKLRDFSLPEGRGK- 308

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               L +G  T+ID+SYNANP S+K AI  LS I       R+ +LGDM E+G+LS+  H
Sbjct: 309 ---VLRKGSLTVIDDSYNANPLSVKNAIETLSGIPSF----RVLILGDMLELGDLSEQMH 361

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVV 448
           I + + +   +I  + L G         +    + ++ +  + L+  +  S+ D + V++
Sbjct: 362 IKVGKEILSSDIDLILLYGRETYHTYTVIKDKKNSYHFDDKEKLYRKLMDSIKDKECVLL 421

Query: 449 VKSSNSCGFYRLINLLLE 466
           VK S       +I  +L+
Sbjct: 422 VKGSRGMRMEDIIEKVLQ 439


>gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
 gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
          Length = 453

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 219/448 (48%), Gaps = 25/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320
                 S+  V   G   EV V  GI   M Q+ +      + L+ ++  ++  +   + 
Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E
Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S + H  + E  + +    V   G     + D         + + M  +   I+  
Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V++VK +NS G  ++   L E+F
Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
 gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
          Length = 454

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 219/448 (48%), Gaps = 21/448 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +S D+R+I     F A+ G  +D H+F   AV  GAG ++V   +      +++P 
Sbjct: 23  LIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVDAGAGALLVQKHL-----DVNVPQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL +LA       +   +AITGS GKTT KEM+   L    K     G++NN
Sbjct: 78  VVVSDTKMALGELASWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ 
Sbjct: 138 DIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRK-- 262
           +  AK EI++GL       +N D S     ++    L  K + +F +S + AD+      
Sbjct: 198 VKQAKGEIYQGLAAGSIAIVNLDSSGETKWES---VLADKEVITFSQSNSAADYYASNIV 254

Query: 263 WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                E S+ + +    + +E+    IG H   N +    I   + A ++     L   H
Sbjct: 255 MNAAGEASFNLHIAASSQEIELSLGIIGQHNVANAIAASIIALQMGATLEEVRAGLK--H 312

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G+    AL++    LID+SYNA+  +MKAA+ +L+       G+R  +LG+M E+
Sbjct: 313 LNKVKGRVEVEALSEK-IKLIDDSYNASVPAMKAAVDLLAAFP----GQRWLILGNMAEL 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSS 440
           GE S + H  + E  +     HV   G     + + L + IH   + E ++ +   +  +
Sbjct: 368 GEESLALHRQVGEYAAPQKFEHVLTYGADAKVISE-LCQGIHFETHQEMIEYIKQHLDQA 426

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + +   ++VK +N    + +   L E +
Sbjct: 427 VPENHTILVKGANGARMFEVAAALKEYY 454


>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 475

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 143/450 (31%), Positives = 215/450 (47%), Gaps = 24/450 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR + P   F A+ G H DGHD+   AV+ GA  V V      S     +P   V 
Sbjct: 31  VVIDSREVRPGSLFAALPGEHVDGHDYARGAVEAGA--VAVLATRPVSTPDAPVPALVVP 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV+ A+  +A A   R   T++A+TGS GKT+TK+++   L     T    GS+NN IG+
Sbjct: 89  DVVAAMGAIARAVVERLGTTVVALTGSAGKTSTKDLIAQLLQRHGPTVWTHGSFNNEIGL 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT  R        + E+G    G IR+LT L  P I ++  +  AH+  F G E+IA A
Sbjct: 149 PLTALRADTTTQHLVLEMGARGKGHIRYLTDLTPPRIGLVLNVGTAHIGEFGGREQIAEA 208

Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           K E+ E L   E  G   LN DD     + +++ A   +T+  FG++ +A  +    +  
Sbjct: 209 KGELVEALPSAEDGGVAVLNADDPLVRAMASRTKA---RTVL-FGEAGDAHVRASNVRLA 264

Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +    +       +V     G H   N L    +       VD    ALS    + G
Sbjct: 265 DGGRPAFTLHTPTGCGDVTMRLYGEHHVSNALAAAAVAHETGMSVDEIAVALS----EAG 320

Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMG 382
           +  R+R  + +     T+++++YNANP SM+AA+  L+ +     GRR  AVLG M E+G
Sbjct: 321 QLSRWRMEVTERSDGVTVVNDAYNANPESMRAALRALAAMGAATPGRRTWAVLGPMAELG 380

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLF 436
           + S + H  +  +    N+S +   G    A  D   ++        VH S+    + L 
Sbjct: 381 DESLAEHDAVGRLAVRLNVSKLVAVGGREAAWLDMGAKNEGSWGEESVHVSDVRAAVDL- 439

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++S L  GDVV+VK+S S G  +L   LLE
Sbjct: 440 LRSELRPGDVVLVKASRSVGLEQLAQALLE 469


>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 214/460 (46%), Gaps = 47/460 (10%)

Query: 24  QGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           Q ++N  G+S D+R+I P   +FA+KG  ++G+ F   A+ KGA   V++ D    I   
Sbjct: 7   QRYINSAGVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVID-DPAYHIADK 65

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           ++ V   DDVL  L +LA   R + K  +I ITGS GKTTTKE++   LS      A  G
Sbjct: 66  TLLV---DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQG 122

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN+IGVPLTL  +  + D  I E+G +H GEI FL  +  P    IT+I  AHL  F 
Sbjct: 123 NLNNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFG 182

Query: 202 GIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             E +   K E+++ L+    TI  N D+   E L    +      +YSFG  +  +   
Sbjct: 183 SFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLENYN-----NVYSFGVGEGVNVS- 236

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG-------------------IGYHMAQNMLMTLG 301
               QC     +++Q    S++    G                   +G +   N+  ++ 
Sbjct: 237 ---AQCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVA 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                        K +  + P+  R +     L  G  T++ ++YNANP+SM AAI  L 
Sbjct: 294 FGRYFKLSTKAIQKGIESYIPQNNRSQ----LLQWGSNTVLLDAYNANPSSMTAAIDNL- 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S +    ++ +LGDM E+G+ +   H  + + L  +  + V+L G +    K   P+ 
Sbjct: 349 -LSMNSFPNKVLILGDMFELGDYATQEHQSIVDKLKEHQWAGVYLIGKNFKQTKAPYPQ- 406

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               Y    +   +F + S  D  ++++K S      RLI
Sbjct: 407 ----YETFEEFREVFKKLSFQD-SLILIKGSRGMALERLI 441


>gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 456

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   V
Sbjct: 27  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 82

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 83  LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260
            + I  AK EI EGL+  GT  LN +D  F + + ++   G + I +F  + + AD    
Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNILTFALTDSAADVYAS 254

Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              R  + C      S      VQL         + +G H   N L        +   ++
Sbjct: 255 ELSRDARGCPAFNLNSPLGTARVQL---------NLLGTHNVSNALAAAAAGCAMGVPLE 305

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L+   P +GR       +      +ID++YNANPAS+ AA+ +L+  +    GR 
Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358

Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
           + VLGD+ E+G+ ++  H ++      +V +LY +
Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393


>gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
 gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
          Length = 453

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 217/449 (48%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  ISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELEADCSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A+ +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   +  + + ELG +H+GEI + T LV+P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL +     +N D +  E  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S++ V   G+ ++V    IG H   N L    +   + A +      L+  H  
Sbjct: 256 NALGVASFILVTPIGE-VDVELGIIGQHNVGNALAAAALSLEMGASLAEVRHGLA--HLS 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+     L +    LID+SYNA+  +MKAA+ +L   S      R  +LG+M E+G+
Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +    V   G     + D        H+  T   +  FI+  +  
Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423

Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468
                 V++VK +NS G  ++   L E+F
Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|144897230|emb|CAM74094.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 304

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 171/306 (55%), Gaps = 6/306 (1%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +FELGM+H GE+  LT +VRPH+AVITTI   H + F+  E+IA AKAEIF G+E  GT+
Sbjct: 1   MFELGMNHAGELIPLTKMVRPHVAVITTIEAVHSAFFATTEDIADAKAEIFLGVEAGGTV 60

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  D+  F  L A + A GI    SFG   +AD ++       + + +   L+  ++  
Sbjct: 61  ILPRDNRHFRRLAAAAKAAGISHRQSFGSHIDADARMLDCAVDPDDTAVFALLRDHALAF 120

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L  V  L  D + A ++L+   P +GRG+R+  A   G   +ID
Sbjct: 121 RVGVPGLHWGMNALAVLLAVGALGGDAEKASQSLAAMRPPKGRGERHVVAWKGGSIEVID 180

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ESYNA+P SMKAAI+ L+   P   GRRIAVLGDM E+G+ + + H  LAE  +L+N   
Sbjct: 181 ESYNASPVSMKAAIATLAAARPGKGGRRIAVLGDMLELGDSAPALHAHLAEAAALWNTDL 240

Query: 404 VWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V  +G  +  L  ALP   R IH   S  + GL   I++ +  GDVVVVK S      ++
Sbjct: 241 VCTAGPLMAHLHQALPATRRGIHAANSTELAGL---IKTVIKPGDVVVVKGSAGSRMAQV 297

Query: 461 INLLLE 466
           +  LLE
Sbjct: 298 VKALLE 303


>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 483

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 147/451 (32%), Positives = 216/451 (47%), Gaps = 32/451 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ +  ++ +A+ G  IG         N +S DSR   P   F AI+G   DGHDF+ 
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVA 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
               +GA + +V+ + V S G   I V    D LG L +  +  R  L     II +TGS
Sbjct: 59  KTAGQGATVAIVDHE-VKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI 
Sbjct: 118 VGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     + 
Sbjct: 178 RLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMA 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI-GYH 291
                L    +  FG   + + ++R     +++S    +  V   G     VH GI G H
Sbjct: 238 ----GLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIPGRH 292

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLIDESY 346
              N L    +        +T  + L+  H        +R AL+    +G  FTLID+S+
Sbjct: 293 NVMNALAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLIDDSF 348

Query: 347 NANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SMKA ++ L   + +   E  R+A+LG M E+G    + H  +        I  +
Sbjct: 349 NANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAI 408

Query: 405 WLSGF----HVLALKDALPRSIHVHYSETMD 431
              G     H+ AL  AL        S ++D
Sbjct: 409 IAVGSAQDQHLDALAQALADGARQSQSASVD 439


>gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 453

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 219/448 (48%), Gaps = 25/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320
                 S+  V   G   EV V  GI   M Q+ +      + L+ ++  ++  +   + 
Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E
Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S + H  + E  + +    V   G     + D         + + M  +   I+  
Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V++VK +NS G  ++   L E+F
Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
          Length = 966

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 230/476 (48%), Gaps = 22/476 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  D+ +A +   +        + I  D+R IA    F A++G  +DG DF   AV+KG
Sbjct: 501 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 560

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D   +    +  V    D L A  ++A A R +    ++AITGS GKTTTK+
Sbjct: 561 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 620

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +         +YNN IG+PLTL  +    +  + E+GM  LG+I  L  L  P
Sbjct: 621 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 680

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T +   H+     IE IA AKAE+ E +E  GT+ LN DD+    ++ K+ A G+
Sbjct: 681 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKA-GV 739

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGI-----GYHMAQNML 297
           + + +FG S++AD  +R       +  M   L+ K+    +  H +     G H   N L
Sbjct: 740 RVV-TFGLSRDAD--VRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNAL 796

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    +L   +    + L+V   ++ R    +C    G +T ++++YNA+P S +A++
Sbjct: 797 AAIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKC----GAYTFVNDAYNASPVSTRASL 852

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+++     GR+IAVLGDM E+G  S+S H  + E  +    + V   G     + +A
Sbjct: 853 KTLAEMFA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEA 909

Query: 418 LPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             ++  V   E M   +     ++  L  GD V+ K S       +I LL +   A
Sbjct: 910 -AKAGGVPLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 964



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 35/276 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +L   ++G  I       +  I  DSR +     F AI+G H DGH FI  AV+K
Sbjct: 1   MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVG 118
           GA  ++   ++    G+ +  V  V ++  AL  +        +R   K  II ITG+ G
Sbjct: 61  GACAILTEREIEIPEGAAA--VLRVPNLAAALEVIVPFFHDYPSR---KMRIIGITGTNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYN---NHIGVPL------------TLARMPVD-VDF 162
           KTTT  M    L         IG+         +P+            TLA M    +DF
Sbjct: 116 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 175

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG- 221
            + E+    L + R     +    AV T +   HL     +E    AKA +F+ + + G 
Sbjct: 176 VVMEVSSHALDQNRVAG--IEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGA 233

Query: 222 ----TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
               T  +N DD+  E + A  HA      Y+  K 
Sbjct: 234 KEGKTAVVNDDDAAGETMLA--HAKCAHLTYAVKKE 267


>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 460

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 225/457 (49%), Gaps = 55/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS++I     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +  
Sbjct: 83  PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +AVIT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               +EIA AK EI +GL + G    N D+        K+ ++  KT             
Sbjct: 203 LGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLS-RNNKTSSVNCKTFSE---------- 251

Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307
               K  ++     VQL   G   ++ H  I Y    H   N+  T+ GI       + T
Sbjct: 252 ----KDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 307

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++ +++         R++    +  FT+I++++NA+P+SMKAAI  L +++ + 
Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAY- 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H+   
Sbjct: 361 -KKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAEFVAEEARKNYHIGKV 419

Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           ++ D      +  L      DVV++K S       ++
Sbjct: 420 QSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIV 456


>gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           parahaemolyticus 10329]
          Length = 454

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 21/447 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R+I     F A+ G  +D H+F   A + GAG ++V   +      ++ P  
Sbjct: 24  IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVEKRL-----DVNAPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA       +   +AITGS GKTT KEM+   L          G++NN 
Sbjct: 79  VVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  IE +
Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
             AK EI++GL+  G   +N D +   L ++    L  K + +F   +  ADF       
Sbjct: 199 KQAKGEIYQGLQAGGIAIVNLDSNGDALWQS---VLADKKVITFSHNNSQADFYASNVTM 255

Query: 266 CSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             E      + +    + +E+    IG H   N +    I   + A V+     L   + 
Sbjct: 256 NEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASIIALHMGATVEEIQFGLLNLNK 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    + +       LID+SYNA+  +MKAA+ +L        G+R  +LG+M E+G
Sbjct: 316 VKGRVDVEQLS---STIKLIDDSYNASVPAMKAAVDLLGAF----HGQRWLILGNMAELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSL 441
           E S + H  + E  +     HV   G     + + L   IH   + E +D +   +  ++
Sbjct: 369 EESLALHRQVGEHAAPQKFEHVLTYGADAKIISE-LCHGIHFETHQEMIDYIKQHLDQTV 427

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            D   ++VK +N    + +   L E F
Sbjct: 428 SDQHTILVKGANGARMFEVAAALKEYF 454


>gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
 gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
          Length = 452

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 187/383 (48%), Gaps = 16/383 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ++ D+R +     F A+ G  +D HDF   A+  GA  ++V+  +      +S+P  
Sbjct: 24  LNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGAQALLVSKHL-----PVSVPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  +L+   R +S A ++A+TGS GKT+ KEM    L    +T    G+ NN 
Sbjct: 79  VVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVP+TL R+  +  + + ELG +H GEI + T LV+P  A++  +A AHL  F  +  +
Sbjct: 139 YGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQ 265
           A AK EIF+GL   G   LN + + +   +     L  KT++ F     A DF  R  + 
Sbjct: 199 AKAKGEIFQGLPANGIAILNEESNDWPNWQT---TLQDKTVWRFSPQAAACDFSARDIRI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +   ++      E+V    G H   N L    +   + A +    + L       G
Sbjct: 256 AQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R + +Q    L+D+SYNAN  SM AA+ VLS++     G R+ V GDM E+G+ +
Sbjct: 316 RLFPVRLSAHQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVLVAGDMAELGDET 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
           +  H ++ +      I  V   G
Sbjct: 369 EKCHREIGDAARDAGIDRVLSCG 391


>gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 453

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 184/387 (47%), Gaps = 31/387 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R +     F A+KG  +D HD+   AV+ GA  ++V+  +      + +P  
Sbjct: 24  IEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHL-----PIDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    L +L    R +S A ++A+TGS GKT+ KEM    L          G++NN 
Sbjct: 79  LVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  F + ELG +H+GEI + T LVRP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIF GL   G   +N D + F   +     L  KT++ F      D         
Sbjct: 199 AQAKGEIFAGLPADGVAIVNADSNDFPHWQVT---LNHKTVWRFSPQAACDIDFFA---- 251

Query: 267 SEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
              S ++V  QG            +V+    G H   N L    +   + A ++     L
Sbjct: 252 ---SDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLAMSVGATLEAVKAGL 308

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S      GR   +  AL++G   L+D+SYNAN  SM AA  VL+++     G R+ V+GD
Sbjct: 309 SQLQAVPGR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGD 361

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ +   H  + E   +  I  V
Sbjct: 362 MGELGDDAPECHRQVGEAARVAGIDRV 388


>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
 gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
          Length = 499

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 189/373 (50%), Gaps = 26/373 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F AI G   DGHDF+     +GA   +V+ + VA  G   +P   VDD +
Sbjct: 42  DSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHE-VADAG---VPQIVVDDTV 97

Query: 93  GALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            AL +LA     R +A     T+I ITGSVGKTTTK+++   LS++ +T A +GS+NN I
Sbjct: 98  RALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEI 157

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLT  ++     F + E+G +H+GEI  LT LV P IAV+  +  AHL  F   E IA
Sbjct: 158 GLPLTALKVNAGTRFLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIA 217

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC 266
            AK+EI +GL   G   LN +D     +     A G    +   + +  D  +     +C
Sbjct: 218 QAKSEIVKGLVPGGVTVLNANDEHVAAMSGI--APGEVLWFGLPQRRTPDRMVAAENVRC 275

Query: 267 SEQSWMEVQLQGKSMEV--VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            E      +L+    E   V+ GI G H   N L    +V  L   +D     L+     
Sbjct: 276 DELDHPSFELRDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVK-- 333

Query: 324 EGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAISVLSQISPHGEGR--RIAVLG 376
             R   +R A++     +  FTLID+S+NANP SMKA +  L +   + E +  RIAVLG
Sbjct: 334 --RISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLG 391

Query: 377 DMCEMGELSQSFH 389
            M E+G   ++ H
Sbjct: 392 AMLELGPDERALH 404


>gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 454

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 221/459 (48%), Gaps = 21/459 (4%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++++A+ G  I     G  N IS D+R I     F A+KG +++G+ + + A++KGA +
Sbjct: 6   QEVIEAVNGEIIVKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKGASV 65

Query: 68  VVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           V+V+      + + S G+    V  V D   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 66  VIVDEIKFEKEDLKSKGT----VIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTST 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +  D D  + E+G S+ GEI  L  + 
Sbjct: 122 KDLIAAFLSGKYKVFKTQGNFNNEIGLPLMIFELNKDYDVAVLEMGTSNFGEINTLAGIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IA IT +  AH+      E I   K  I +  +    + +N ++   + +K + H  
Sbjct: 182 LPDIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDDSCLVINCENDMLKTVKDEDHK- 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I  I   G  K+ +   +  +  SE +  +   + +      + +G H   N L+ + I
Sbjct: 241 NI-NIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNALLGIQI 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   K L  F     R +     +    FT+I++SYNANP SMKAAI+VL  
Sbjct: 300 SKDLGLKFEEMEKGLDNFKATSMRLE----FIKHNKFTIINDSYNANPDSMKAAINVLKS 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +     R+IAVLG M E+G+ +   H ++ E  +      +  +G +  + K+    + 
Sbjct: 356 YTGD---RKIAVLGTMGELGDYANIAHKEVGE-FAKGKADILLTTGEYKDSYKEGFGTNT 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            V   +T D L   + S + D D ++VK+S S  F  +I
Sbjct: 412 LVF--DTKDDLIKSLNSMIKDEDTILVKASRSAKFEEII 448


>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 448

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 216/472 (45%), Gaps = 37/472 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D+ +A+ G + G     F   ++ DSR+      F A+KG  +DGH++I  AV +G
Sbjct: 5   WLTDDIAKAVGGAAEGD-SVAFTR-VTTDSRADCSGALFVALKGDRFDGHEYIDAAVSQG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+      A +  + +P     D L  L +L    R R    + A+TGS GKTT KE
Sbjct: 63  AVAVMAQAKANADVAQIIVP-----DSLAGLGRLGALNRSRFNGPVAAVTGSAGKTTVKE 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS         G++NNHIGVPL+L ++  +    +FELG S +GEI +   L RP
Sbjct: 118 LLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEEHRSAVFELGASAVGEIAYTVALARP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++   A  H+  F  +  I  AK EI  GL + G   LN DD+ F    A     G 
Sbjct: 178 QVAILNNAAAVHVEGFGDLASIVKAKGEIVCGLPEDGVAVLNKDDANF---SAWVEMAGA 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGI-------GYHMAQN 295
           + + SFG   +A  + +          + ++L G +  +     GI       G H  +N
Sbjct: 235 RKVISFGLDDSAMVRAQN---------IHLELNGSTFRLSAPEGGIDATLPLPGAHNVRN 285

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        L   ++     L+   P +GR  +    L      ++D++YNA+P SMKA
Sbjct: 286 ALAAAAAALALGWTLEEVRDGLASAAPVKGRMNKL---LGINGSVILDDTYNASPTSMKA 342

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL++      GRRI  LG M E+G +++  H ++A+      +  +   G      +
Sbjct: 343 AIDVLARYP----GRRIVALGHMGELGSVAEDAHREVAQYARDNGVDMLLGIGRWAAEYR 398

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +       V    T D +  +++  L     V+VK S S     ++  ++E+
Sbjct: 399 EGFGDESPV--VTTHDDIAAWLRERLDSNTTVLVKGSRSAAMENVVKQIVEK 448


>gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 456

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   V
Sbjct: 27  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 82

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 83  LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260
            + I  AK EI EGL+  GT  LN +D  F + + ++   G + + +F  + + AD    
Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYAS 254

Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              R  + C      S      VQL         + +G H   N L        +   ++
Sbjct: 255 ELSRDARGCPAFTLNSPLGTARVQL---------NLLGTHNVSNALAAAAASCAMGVPLE 305

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L+   P +GR       +      +ID++YNANPAS+ AA+ +L+  +    GR 
Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358

Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
           + VLGD+ E+G+ ++  H ++      +V +LY +
Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393


>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 968

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 230/476 (48%), Gaps = 22/476 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  D+ +A +   +        + I  D+R IA    F A++G  +DG DF   AV+KG
Sbjct: 503 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 562

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D   +    +  V    D L A  ++A A R +    ++AITGS GKTTTK+
Sbjct: 563 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 622

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +         +YNN IG+PLTL  +    +  + E+GM  LG+I  L  L  P
Sbjct: 623 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 682

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T +   H+     IE IA AKAE+ E +E  GT+ LN DD+    ++ K+ A G+
Sbjct: 683 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKA-GV 741

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGI-----GYHMAQNML 297
           + + +FG S++AD  +R       +  M   L+ K+    +  H +     G H   N L
Sbjct: 742 RVV-TFGLSRDAD--VRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNAL 798

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    +L   +    + L+V   ++ R    +C    G +T ++++YNA+P S +A++
Sbjct: 799 AAIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKC----GAYTFVNDAYNASPVSTRASL 854

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+++     GR+IAVLGDM E+G  S+S H  + E  +    + V   G     + +A
Sbjct: 855 KTLAEMFA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEA 911

Query: 418 LPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             ++  V   E M   +     ++  L  GD V+ K S       +I LL +   A
Sbjct: 912 -AKAGGVPLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 966



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 35/276 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +L   ++G  I       +  I  DSR +     F AI+G H DGH FI  AV+K
Sbjct: 3   MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVG 118
           GA  ++   ++    G+ +  V  V ++  AL  +        +R   K  II ITG+ G
Sbjct: 63  GACAILTEREIEIPEGAAA--VLRVPNLAAALEVIVPFFHDYPSR---KMRIIGITGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYN---NHIGVPL------------TLARMPVD-VDF 162
           KTTT  M    L         IG+         +P+            TLA M    +DF
Sbjct: 118 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG- 221
            + E+    L + R     +    AV T +   HL     +E    AKA +F+ + + G 
Sbjct: 178 VVMEVSSHALDQNRVAG--IEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGA 235

Query: 222 ----TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
               T  +N DD+  E + A  HA      Y+  K 
Sbjct: 236 KEGKTAVVNDDDAAGETMLA--HAKCAHLTYAVKKE 269


>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
 gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
          Length = 456

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 222/468 (47%), Gaps = 32/468 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W    + QA+QG  IG      ++G+S D+R+I   + F A+ G ++D HDF+  A+  G
Sbjct: 3   WLLSQVAQAVQGRLIGADVS--IDGVSTDTRAITEGQLFIALAGENFDAHDFLAPAIAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V  +     G   +P   VDD   AL +LA A R +    +IA+TGS GKTTTKE
Sbjct: 61  ATALMVADESKVPTG---VPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKE 117

Query: 125 MLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           M+   L +       +  G+ NN IG+PLTL  +       + E+GM+H GEI +L  + 
Sbjct: 118 MVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYLAPIG 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +A+IT    AHL     ++E+A  K  IF GL   G   +N DD++  L +  +   
Sbjct: 178 APTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADDAYAGLWRGMA--- 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + + +FG    AD    K +Q   +  +E+        ++    G H A+N +     
Sbjct: 235 GGRPVRTFGIDNAADVSA-KVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAA 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +   I  L  F   +GR +R      QG   ++D++YNANP S++A I VL+ 
Sbjct: 294 CLAAGIPMVAVIAGLEAFSGVKGRLQRRTG--KQG-AEILDDTYNANPDSVRAGIDVLAA 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 GR++ VLGDM E+GE S  +H ++        I  ++       AL +A  +++
Sbjct: 351 TI----GRKLLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLF-------ALGEAAQQAV 399

Query: 423 H------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   HY   +D L   +   L     V+VK S      R+ + L
Sbjct: 400 RNFGEGAKHYC-NVDKLIAAVDKELGPETTVLVKGSRFMKMERVADAL 446


>gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   V
Sbjct: 27  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 82

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 83  LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260
            + I  AK EI EGL+  GT  LN +D  F + + ++   G + + +F  + + AD    
Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYAS 254

Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              R  + C      S      VQL         + +G H   N L        +   ++
Sbjct: 255 ELSRDARGCPAFTLNSPLGTARVQL---------NLLGTHNVSNALAVAAASCAMGVPLE 305

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L+   P +GR       +      +ID++YNANPAS+ AA+ +L+  +    GR 
Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358

Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
           + VLGD+ E+G+ ++  H ++      +V +LY +
Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393


>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
 gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 30/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           ++ I+ DSR I     F  I G   D H FI   + KGA         +A++    +P  
Sbjct: 28  ISAITTDSRKIEKDCLFVPIVGERVDAHRFIPDVMTKGA---------LATLSERELPEA 78

Query: 85  ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD  L A+  +A     + +  ++ ITGSVGKT+TKE++   L    +T    G
Sbjct: 79  DYAYIQVDASLQAVKDIAEFYLEQLQIPVVGITGSVGKTSTKEVIASVLKEKYRTLKTQG 138

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN +G+PLT+ R+  +    + E+G+S  GE+  LT + +P   VIT I   HL N  
Sbjct: 139 NFNNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLG 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             + +  AK EIF+ ++  G I LN DD   +L+  + +  G+K ++ FG +   D    
Sbjct: 199 DRDGVLKAKTEIFQSMKPNGHIVLNGDDD--KLITVREYN-GVKPVF-FGLNSERDVYAD 254

Query: 262 KWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + +    +     + L   + +V+    G HM  N L    +  I    ++   + +   
Sbjct: 255 QIESKGLKGVACRIHLGEDAFDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESL 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               GR K     +    F ++D+ YNANP SMKA++ VL      GEGRR+A+LGDM E
Sbjct: 315 ETIRGRFK----MIETDKFLVVDDCYNANPMSMKASLDVLHD----GEGRRVAILGDMGE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFI 437
           +GE   + H  +    ++  I      G   + + +A  ++     V+Y +T + L   +
Sbjct: 367 LGEDEAALHEGVGIHAAICGIDACVCVGDLAVHIAEAARKANPDFPVYYEKTRESLLEHL 426

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  GD ++VK+S+   F  ++  L E
Sbjct: 427 NDYVQKGDTILVKASHFMKFEEVVKALEE 455


>gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 452

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 16/377 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A +      L+      GR    +
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ HI 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHIQ 374

Query: 392 LAEVLSLYNISHVWLSG 408
           + E      I  V  +G
Sbjct: 375 VGEAAKAAGIDRVLSTG 391


>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
 gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
          Length = 443

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 208/455 (45%), Gaps = 45/455 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R+IA    +FA+KG  ++G+ F   A++KGA   V+  D VA     S  +  V
Sbjct: 13  GVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVI--DEVAY--QTSDKMILV 68

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL  L +LA   R   K  +I ITGS GKTTTKE++   LS      A  G+ NN+IG
Sbjct: 69  SDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQQLNVVATQGNLNNNIG 128

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H GEI FL ++ +P    IT+I  AHL  F   E +  
Sbjct: 129 VPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSFEGVIQ 188

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ L+    TI  N D+   E L A          YSFG  K  +  +    QC 
Sbjct: 189 TKGELYDYLKAHQKTIIANADNPITEALLAD-----YDNDYSFGVGKGVNVAV----QCV 239

Query: 268 EQSWMEVQLQGKSMEVVHHG-------------------IGYHMAQNMLMTLGIVSILTA 308
               + +Q +  S +    G                   +G +   N+   +        
Sbjct: 240 GTQPVTIQFEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTNIAAAVAFGKFFKL 299

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   + +  + P+  R +  +   N    T++ ++YNANP+SM AAI  L  +S   E
Sbjct: 300 SNEAIKRGIEAYIPQNNRSQLMQWGSN----TVLLDAYNANPSSMAAAIDNLLTMSD--E 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            +++ +LGDM E+G  +   H  + + L  Y    V+L G +    +   P+       E
Sbjct: 354 KKKVLILGDMFELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQ------YE 407

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           T +       +   +  ++++K S      RLI +
Sbjct: 408 TFEAFKEVFPTLSFNNCLLLIKGSRGMALERLIQV 442


>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium longum subsp. longum F8]
          Length = 480

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 213/446 (47%), Gaps = 31/446 (6%)

Query: 6   TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ +A+ G  IG         N +S DSR   P   F AI+G   DGHDF+     +
Sbjct: 2   SVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA + +V+ + V S G   I V    D LG L +  +  R  L     II +TGSVGKTT
Sbjct: 61  GATVAIVDHE-VKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI  LT +
Sbjct: 120 TKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARLTRI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     +      
Sbjct: 180 APPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMA----G 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI-GYHMAQNM 296
           L    +  FG   + + ++R     +++S    +  V   G     VH GI G H   N 
Sbjct: 236 LANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIPGRHNVMNA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLIDESYNANPA 351
           L    +        +T  + L+  H        +R AL+    +G  FTLID+S+NANP 
Sbjct: 295 LAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLIDDSFNANPD 350

Query: 352 SMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           SMKA ++ L   + +   E  R+A+LG M E+G    + H  +        I  +   G 
Sbjct: 351 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGS 410

Query: 410 ----HVLALKDALPRSIHVHYSETMD 431
               H+ AL  AL        S ++D
Sbjct: 411 AQDQHLDALAQALADGARQSQSASVD 436


>gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 7169]
 gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC1]
          Length = 494

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         S+ V    IG H   N L        L   ++   K L    P +G
Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +
Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
              H  L   L+L  I HV   G H+     A+   +SI  HY++
Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTATAINEQKSIARHYTD 453


>gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
 gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
          Length = 459

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 202/440 (45%), Gaps = 19/440 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+RS+   + F A+KG  +D HDF+  A  +GA   + +  + A+     +P   V 
Sbjct: 27  VHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQGAVAAIAHHGLAAA----GLPGLEVA 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHI 147
           D   AL +LA   R +    +IA+TGS GKTT  +M+   L + K T  +A  G+ NN I
Sbjct: 83  DSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVTQMIAAILRAWKSTQAFATEGNLNNDI 142

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+      G+ ELGM+H GEI +L  L +P +A++      HL   + +E +A
Sbjct: 143 GVPLTLLRLRASHAVGVVELGMNHPGEIAYLAALAKPGVALVNNAQREHLEFMATVEAVA 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                + + L   G      DD +  + +  +   G + + +F ++  AD   +   Q S
Sbjct: 203 RENGSVLQALGTDGIAVFPADDDYTAIWRGLA---GARRVLTFAQTGPADVTAQ--AQWS 257

Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              W +  +     ++   H  G H  +N L            +      LS F P +GR
Sbjct: 258 GDCWQVAARTPAGPLDFPLHIAGRHNVKNALAATACALAAGVPLPVIAAGLSEFAPVKGR 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     L     TLID++YNANP SM+AAI VL+++       R+ V+GDM E+G+   
Sbjct: 318 SRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLAELP----APRLLVMGDMGEVGDQGP 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            FH +         I  ++  G        A       H+S+  D L   + + L     
Sbjct: 374 QFHEEAGRYAHARGIEQLFTLGAQSQRASTAF--GAGRHFSQMAD-LAAAVVAELPQAGS 430

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           V+VK S      +++ ++ +
Sbjct: 431 VLVKGSRFMKMEQVVQVIAD 450


>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
          Length = 471

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 223/464 (48%), Gaps = 46/464 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           V G SIDSR++   E FFA+ G  +DGH+F+  A++ GA   VV+   V S        L
Sbjct: 24  VVGYSIDSRTVGAGELFFAVMGERFDGHEFVKTALEAGAVAAVVSMRWVVSAEVDPCKLL 83

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P  G D VL AL KLA   R      +I +TGS GKTTTKE +   L++  K     G
Sbjct: 84  RVP-DGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKTTTKECVAAVLAAKFKVLKSAG 142

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NNH GVPL L R+  +    + E+GM+H GEI  L  +  P  AV++ +A  HL  F+
Sbjct: 143 NLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFA 202

Query: 202 -GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G+E IA AK E+ + L   G  FLN DD F         A        FG S+ AD + 
Sbjct: 203 DGMEGIARAKKELVDALPAAGVAFLNADDVFVSTFGEGHEA------RMFGLSETADVRG 256

Query: 261 RKWKQCS-EQSWMEVQLQGKSMEVVHHG------IGYHMAQNML--MTLGIVSILTADVD 311
            + K    E     VQ+  +   V          +G H   N L  + +G+ S +T  + 
Sbjct: 257 VEVKNVGLEGMQFVVQVTAREGRVADKMRARIALLGEHNVYNALAAIAVGLESGMT--LG 314

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             + AL    P + RG+     +      LI++SYN+NP +++A +  L  I     GR 
Sbjct: 315 ECVFALDSVVPSDKRGEM----IEWHGARLINDSYNSNPRALEAMVDALMAIEG---GRH 367

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------LSGFHVLALKDALPRSIH 423
           I + G+M E+G+ +   H      ++   +  V         L+G   ++  +AL     
Sbjct: 368 IVIAGEMLELGQDAGKLHAASGRQMAKRGVDVVVGVRGFAESLAGVAKMSGAEAL----- 422

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + +T +    +++++L +GDVV++K+S      + +  L+E+
Sbjct: 423 --FVKTPEEAGAWMKANLREGDVVLLKASRGVRLEKALASLVED 464


>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 480

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 213/446 (47%), Gaps = 31/446 (6%)

Query: 6   TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ +A+ G  IG         N +S DSR   P   F AI+G   DGHDF+     +
Sbjct: 2   SVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA + +V+ + V S G   I V    D LG L +  +  R  L     II +TGSVGKTT
Sbjct: 61  GATVAIVDHE-VKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI  LT +
Sbjct: 120 TKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARLTRI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     +      
Sbjct: 180 APPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHVVPMA----G 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI-GYHMAQNM 296
           L    +  FG   + + ++R     +++S    +  V   G     VH GI G H   N 
Sbjct: 236 LANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIPGRHNVMNA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLIDESYNANPA 351
           L    +        +T  + L+  H        +R AL+    +G  FTLID+S+NANP 
Sbjct: 295 LAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLIDDSFNANPD 350

Query: 352 SMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           SMKA ++ L   + +   E  R+A+LG M E+G    + H  +        I  +   G 
Sbjct: 351 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGS 410

Query: 410 ----HVLALKDALPRSIHVHYSETMD 431
               H+ AL  AL        S ++D
Sbjct: 411 AQDQHLDALAQALADGARQSQSASVD 436


>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
 gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
          Length = 457

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 209/445 (46%), Gaps = 42/445 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI+ D+R++ P + F A++G  +DGH++   AV+KGA  V+      + +  L  P+  V
Sbjct: 32  GITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGALTVIAEATNASQLEGL--PLIQV 89

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           ++ L A  ++A   R + +  +IA+TGSVGKTTTKE++   LS+         +YNN IG
Sbjct: 90  ENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELIAAVLSTKGTVLKTQANYNNEIG 149

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL  +  D D+ + E+ M   G+I  LT +  P + VIT +  AH+      E IA 
Sbjct: 150 VPKTLLELTPDHDYAVIEMAMRGSGQIAELTEIANPTVGVITNVGTAHIGLLGSTEAIAK 209

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+   +   G   LN+D+              I T     + +   + L       +
Sbjct: 210 AKCELLAHMSNNGVAVLNHDNQRL-----------IDTAAQVWQGQTLTYGLEGGDVQGQ 258

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E+ L+ + ME      G H A N L  L I  +L  D +T    L+V  P  GR +
Sbjct: 259 LIAPEI-LKVEGMEFPIPLPGRHNALNYLAALAIGKLLGVDWETLRNGLNVELPP-GRSQ 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           RY    +     ++DE+YNA   SM AA+ +L+Q       R IAVLG M E+G  S   
Sbjct: 317 RYELPND---VVILDETYNAGVESMVAALEMLAQTPGK---RHIAVLGAMKELGTQSGEL 370

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKD------------ALPRSIHVHYSETMDGLFLF 436
           H  + + +   N     L G  +L  +             ++P       +  ++ L  F
Sbjct: 371 HQQVGQKVEQLN-----LDGLRILVDESDPEAEAIATGVTSVPVESFCDSNPLVEHLLEF 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLI 461
           +Q     GD ++ K+S+S G  +++
Sbjct: 426 VQP----GDRLLFKASHSVGLDQVV 446


>gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
 gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
          Length = 468

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 200/421 (47%), Gaps = 31/421 (7%)

Query: 5   WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L++A QG+      P+  +  I  DSR     +AF A+KG  +D H+F+   + K
Sbjct: 14  WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNK 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V   +      L +    V D   AL +L    R ++ +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  +  AHL  F G E I  AK+EI+  + K GT  +   D F + ++   HA+
Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG  +  D    +    ++ +   +       EV     G H  QN       
Sbjct: 246 QTTQVLSFG--EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAI 357
              +   +D  +  L +    +GR       LN     Q  F  ID++YNANP SM+AA 
Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGR-------LNFISHKQHLF--IDDTYNANPTSMRAAG 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKD 416
            VL+Q S    G ++ V GD+ E+G+ +   H  L   L   +I+ +   G F   AL+ 
Sbjct: 355 EVLAQQS----GIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFLIAVGEFAPAALEG 410

Query: 417 A 417
           A
Sbjct: 411 A 411


>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           cholerae LMA3894-4]
          Length = 453

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G     + D         + + M  +   I+   
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               V++VK +NS G  ++   L E+F
Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
 gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
          Length = 493

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 189/373 (50%), Gaps = 26/373 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F AI G   DGHDF+     +GA   +V+ + VA  G   +P   VDD +
Sbjct: 36  DSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHE-VADAG---VPQIVVDDTV 91

Query: 93  GALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            AL +LA     R +A     T+I ITGSVGKTTTK+++   LS++ +T A +GS+NN I
Sbjct: 92  RALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEI 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLT  ++     F + E+G +H+GEI  LT LV P IAV+  +  AHL  F   E IA
Sbjct: 152 GLPLTALKVNAGTRFLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIA 211

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC 266
            AK+EI +GL   G   LN +D     +     A G    +   + +  D  +     +C
Sbjct: 212 QAKSEIVKGLVPGGVTVLNANDEHVAAMSGI--APGEVLWFGLPQRRTPDRMVAAENVRC 269

Query: 267 SEQSWMEVQLQGKSMEV--VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            E      +L+    E   V+ GI G H   N L    +V  L   +D     L+     
Sbjct: 270 DELDHPSFELRDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVK-- 327

Query: 324 EGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAISVLSQISPHGEGR--RIAVLG 376
             R   +R A++     +  FTLID+S+NANP SMKA +  L +   + E +  RIAVLG
Sbjct: 328 --RISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLG 385

Query: 377 DMCEMGELSQSFH 389
            M E+G   ++ H
Sbjct: 386 AMLELGPDERALH 398


>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
 gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
          Length = 452

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 33/466 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  + Q +   SI        N IS DSR+I   + F A++G  +DGH F+   + KGA
Sbjct: 13  TFQKISQTLSDKSI--------NKISTDSRTIQENDIFIALQGDKFDGHRFVDEVIDKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++VN + V+   +  IP   V D L A  ++A   R   K  II ITGSVGKTTTKE+
Sbjct: 65  IALIVNHE-VSVKSTKEIPQIVVKDTLIAYQEIANWWRNHVKIPIIGITGSVGKTTTKEI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L      +    +YNN IGVP TL  +  + ++ + E+ M   GEI  L+ +  P 
Sbjct: 124 IAAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQIACPT 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT +  AH+      + IA AK E+   + +     LN+DD              ++
Sbjct: 184 IGIITNVGTAHIGRLGSRQAIAEAKCELLAEMPENSVAILNHDDQRL-----------VE 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T  +  + K   + L       E   +E Q L+ + M+      G H A N L  L +  
Sbjct: 233 TAATVWQGKTITYGLEGGDITGE--LLENQILRVEGMDFPLPLPGRHNALNYLAALAVTK 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    ++ ++V  P +GR ++Y     +    L+DE+YNA   SMKAA+ +L   +
Sbjct: 291 ELNLDWTFLMEGVTVNLP-QGRSQQYSL---KNDVILLDETYNAGLESMKAALQLLKD-T 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSI 422
           P    R +AVLG M E+ + S   H ++ E      I  +++        A+   +  +I
Sbjct: 346 PG--TRHLAVLGTMKELADASAELHREVGETAEKLAIDALFILVDDPQSQAITKGVT-TI 402

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 T + L   ++  +  GD ++ K+SNS G  R++  +L++ 
Sbjct: 403 ETQSFPTHEQLIQRLREVIQPGDRILFKASNSVGLNRVVEAVLQQL 448


>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
 gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
          Length = 453

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G     + D         + + M  +   I+   
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               V++VK +NS G  ++   L E+F
Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
 gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
          Length = 474

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 205/430 (47%), Gaps = 47/430 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ QA QG  +        ++ I+ D+R++A Q  F A+KG ++D H F+ +A+  G
Sbjct: 5   TLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDNAISTG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTK 123
           A  +     +V       I +  V D   AL  L+   R + K    IAITGS GKTT K
Sbjct: 65  AKAL-----LVEQASDHDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNGKTTCK 119

Query: 124 EMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           E+L+  L           A  G++NN IGVPLTL R+  +  F + ELG +H GEI +  
Sbjct: 120 ELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGEINYTA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV+P +A+I  I  AHL  F  +  +AS+K EI+  L+  GT  +N D  F +   ++ 
Sbjct: 180 QLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQTYLSQL 239

Query: 240 HALGIKTIYSFGKS----------------KNADFQLR-KWKQCSEQSWMEVQLQGKSME 282
            A G + I++F ++                 NA+F L  K   C+    + +++ G+   
Sbjct: 240 QAQG-QCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPICTGTQSISLKIPGQ--- 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   H   N L    +   L   ++   K L+      GR  R        F T+I
Sbjct: 296 --------HNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEV---NDFLTII 344

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YNAN AS+KAAI+VL   S     ++  +L DM E+G  ++  H  + E  ++ N+ 
Sbjct: 345 DDTYNANSASVKAAINVLCATST----KQALILSDMGELGTHTELEHQKVGEYAAMQNVP 400

Query: 403 HVWLSGFHVL 412
            +   G H L
Sbjct: 401 LLLAVGTHSL 410


>gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 464

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 217/457 (47%), Gaps = 40/457 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     +  I G + +GH ++  A++ GA  V+   +         + V 
Sbjct: 30  IQGVCIDSRKVVEGNLYIPIHGVNNNGHAYVQQAIEHGAKAVL--WERKEQNPPHEVVVI 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +LA A R +    ++ ITGS GKT+TK++L   L+    T   +G++NN 
Sbjct: 88  LVEDTTVALQQLAKAYRDQLNLKVVGITGSNGKTSTKDILASVLAKHFITQKTLGNFNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +  + +  + E+GM +L E+ FLT++VRP IA+I+ +  AHL N   +E I
Sbjct: 148 IGVPLTLLSLSENCEAAVVEMGMENLNELSFLTNIVRPDIAIISNVGTAHLENLGTMENI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI EGL + G +  N D         +    G   I +FGK  + D  +    Q 
Sbjct: 208 AKAKLEIVEGLNEHGLLIYNGDQQLLRDAAVEKQIPGYIKIRTFGKEAHNDVIVSHVHQL 267

Query: 267 --------SEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                   +E  W            V+H   IG H A N          L    +   + 
Sbjct: 268 EDGLRFSINEDDW------------VYHLDMIGKHQAMNATAAWIAAKALGLSEEEIAEG 315

Query: 317 LSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAV 374
              F   E  G R     +NQ    ++++SY +NP S  AA+  + +   P+    ++AV
Sbjct: 316 ---FASVEKTGLRNELVKVNQCL--ILNDSYKSNPQSALAAVDTMEEFDIPY----KLAV 366

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETM 430
           LGDM E+GE S   H  L + +S Y+I  V   G    +     +D +  ++  H+++  
Sbjct: 367 LGDMLELGETSDMIHYTLGKDISRYHIQEVLTIGDMACYIAQGARDNMEHTLVRHFTDK- 425

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + L  +++  +    +++VK S       ++++L++E
Sbjct: 426 EALISYLKPYMHKECMLLVKGSRGMKLDEVVDVLVQE 462


>gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
 gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
          Length = 470

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 220/467 (47%), Gaps = 29/467 (6%)

Query: 9   DLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           D L +I G  + + P G    +  ++IDSR       F  ++G   DGH ++  A Q+GA
Sbjct: 12  DQLASIVGARL-VAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGA 70

Query: 66  GLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IAITGS 116
              +V   + +  GS  +         +  V D L AL  L        +  I I +TGS
Sbjct: 71  SAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIGVTGS 130

Query: 117 VGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKT+TKEML   LS    + +A  G+ N+ IGVPL++  +  + +  I E+G+ H+GE+
Sbjct: 131 SGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDHVGEM 190

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +V+P++AV+T I  AHL  F   E IA  KA+IF   +     F+  D+ FF +L
Sbjct: 191 DVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEFFHVL 250

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                     T   +G +    F+   W+    +    V L  K + +   G G HM +N
Sbjct: 251 VEGWRG----TFLPYGPATVEGFE--GWESRGLEG---VILSWKGLRIPLQGYGEHMVRN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   L        + L  + P  GRG+        G + L+D  YNANP SM+A
Sbjct: 302 ALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELKEIG---GVWFLVD-CYNANPESMRA 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++  +  +   G  RRI VLG M E+G+ + S H  L + L+ Y    V L G  + A  
Sbjct: 358 SLEGVRGLK--GIRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEMEAAF 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             L     V +  T++     + S + +GD+V++K S + G  R+I 
Sbjct: 416 AVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQ 462


>gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 455

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 217/454 (47%), Gaps = 39/454 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV- 85
           +N I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +P  
Sbjct: 26  LNQIEFDSRKITEGDLFLPLKG-ERDGHDFIDLAFENGA---------VATFSEKELPGK 75

Query: 86  --FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               V+D L A   LA     + +  +IA+TGS GKT+TK+M++  LS+  KTY   G+Y
Sbjct: 76  PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNY 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP D +  + E+G  H+G+I  L+ + RP IAV+T +  AHL  F   
Sbjct: 136 NNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSR 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRK 262
           ++IA  K +I +G++  G I +   DS  +    ++     + +  FG     D+Q L  
Sbjct: 196 DKIAQGKMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFG-----DYQELNV 244

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                E+  +       +  V     G + A N ++   +  +L    +  I+AL     
Sbjct: 245 TDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQL 304

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R + ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G
Sbjct: 305 TANRTE-WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELG 361

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDG 432
             S + H  L + LS   I  +   G  +  L     +  P   HV +       +  + 
Sbjct: 362 PDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFED 420

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 421 MGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 470

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 220/467 (47%), Gaps = 29/467 (6%)

Query: 9   DLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           D L +I G  + + P G    +  ++IDSR       F  ++G   DGH ++  A Q+GA
Sbjct: 12  DQLASIVGARL-VAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGA 70

Query: 66  GLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IAITGS 116
              +V   + +  GS  +         +  V D L AL  L        +  I I +TGS
Sbjct: 71  SAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIRIGVTGS 130

Query: 117 VGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKT+TKEML   LS    + +A  G+ N+ IGVPL++  +  + +  I E+G+ H+GE+
Sbjct: 131 SGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDHVGEM 190

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +V+P++AV+T I  AHL  F   E IA  KA+IF   +     F+  D+ FF +L
Sbjct: 191 DVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEFFHVL 250

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                     T   +G +    F+   W+    +    V L  K + +   G G HM +N
Sbjct: 251 VEGWRG----TFLPYGPATVEGFE--GWESRGLEG---VILLWKGLRIPLQGYGEHMVRN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   L        + L  + P  GRG+        G + L+D  YNANP SM+A
Sbjct: 302 ALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELKEIG---GVWFLVD-CYNANPESMRA 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++  +  +   G  RRI VLG M E+G+ + S H  L + L+ Y    V L G  + A  
Sbjct: 358 SLEGVRGLK--GVRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEMEAAF 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             L     V +  T++     + S + +GD+V++K S + G  R+I 
Sbjct: 416 AVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQ 462


>gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
 gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
          Length = 458

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 211/446 (47%), Gaps = 34/446 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+I P + F A+ GP +DGH ++     KGA   +V  ++  +     +P   V 
Sbjct: 28  VSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVAREVEGA----PLPQLVVA 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL +L    R   K  + AITGS GKT+ KEML   L S        A  G+ NN 
Sbjct: 84  DTRLALGRLGALNREAFKGPVAAITGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNND 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G PLTL  +  +    + ELG S +G+I +   LVRP +++IT    AH+  F G E+I
Sbjct: 144 LGAPLTLLELSAEHRSAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--W 263
             AK EI +GL  TGT  LN DD    +   +   +  K I SFG  +  ADF      +
Sbjct: 204 VQAKGEILDGLSATGTAVLNRDDKACPIWAER---VAGKRIVSFGLDNPLADFSAGSIAY 260

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q    +++     G S+ V  + +G H   N L        L    +  +  L    P 
Sbjct: 261 DQRGCPNFVLTGPLG-SLRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPV 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR      A       LID+SYNANPAS+ AAI VL+  +    GR I VLGDM E+GE
Sbjct: 320 KGRAVAQMLANG---VRLIDDSYNANPASICAAIDVLASFA----GRTILVLGDMGELGE 372

Query: 384 LSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            ++  H D+      +V +LY +  +     H +A      R    H+ +    L   ++
Sbjct: 373 WAEQGHRDVGAYAAGKVDTLYAVGPLM---AHAVAAFGQGAR----HFPDQAS-LIESLR 424

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    G  +++K S S    ++++ L
Sbjct: 425 AEQGSGTTILIKGSRSAAMDKVVDAL 450


>gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 455

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 217/454 (47%), Gaps = 39/454 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV- 85
           +N I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +P  
Sbjct: 26  LNQIEFDSRKITEGDLFLPLKG-ERDGHDFIDLAFENGA---------VATFSEKELPGK 75

Query: 86  --FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               V+D L A   LA     + +  +IA+TGS GKT+TK+M++  LS+  KTY   G+Y
Sbjct: 76  PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNY 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP D +  + E+G  H+G+I  L+ + RP IAV+T +  AHL  F   
Sbjct: 136 NNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSR 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRK 262
           ++IA  K +I +G++  G I +   DS  +    ++     + +  FG     D+Q L  
Sbjct: 196 DKIAQGKMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFG-----DYQELNV 244

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                E+  +       +  V     G + A N ++   +  +L    +  I+AL     
Sbjct: 245 TDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQL 304

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R + ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G
Sbjct: 305 TANRTE-WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELG 361

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDG 432
             S + H  L + LS   I  +   G  +  L     +  P   HV +       +  + 
Sbjct: 362 PDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFED 420

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 421 MGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis
           glossinidius str. 'morsitans']
 gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 455

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 206/446 (46%), Gaps = 24/446 (5%)

Query: 30  ISIDSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +  DSR  S A    F A+KG  +D HDF   AV  GA  ++VN  +      L +P   
Sbjct: 27  VVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNRRL-----PLDVPQLV 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL +L    R +  A ++A+TGS GKT+ KEM    L    +  A  G++NN I
Sbjct: 82  VADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGRVLATEGNFNNDI 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+    DF + ELG +HLGEI + T LVRP  A++  ++ AHL+ F  +  +A
Sbjct: 142 GVPLTLLRLTPAHDFAVIELGANHLGEIAWTTDLVRPETALVNNLSAAHLAGFGSLSGVA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EIF GL   G   LN D   +   +     LG K ++ F                S
Sbjct: 202 QAKGEIFAGLPANGCGILNADSHDWPHWQ---QVLGHKAVWRFAVQAAGGVDFFASDIES 258

Query: 268 EQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +Q  +   L     E  V     G H   N L    +   + A++      L+      G
Sbjct: 259 DQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACALALSVGAELPAVAAGLAQLQAVPG 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   +  AL  G   ++D+SYNAN  SM AA  VL+++     G R+ V+GDM E+GE +
Sbjct: 319 R--LFPIALGAGRL-MLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELGEEA 371

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVD 443
              H  + E ++L  I  V   G     + +A  R  H      +      L  + +++ 
Sbjct: 372 AECHRQVGEAVALAGIDKVLSVGSLSHLIGEASGRGEHFQDKTALTARLAQLLSEQAVM- 430

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
              V+VK S S    +++  L E+ P
Sbjct: 431 --TVLVKGSRSAAMEQVVRALQEKAP 454


>gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 103P14B1]
 gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis O35E]
 gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 101P30B1]
          Length = 494

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         S+ V    IG H   N L        L   ++   K L    P +G
Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +
Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
              H  L   L+L  I HV   G H+     A+   +SI  HY++
Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTD 453


>gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 198/396 (50%), Gaps = 50/396 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   
Sbjct: 26  DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   +      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI F   L +PH+A+IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
           G ++I  AK EI EGL  +GT  LN +D  F + + ++   G + I +F      AD   
Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLH- 252

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVSILTA---------DV 310
                    S +    +G     ++  +G    Q N+L  L + + L A          +
Sbjct: 253 --------ASDLSNDARGCPGFTINSPLGVAQVQLNLLGALNVTNALAAAAAACALGVTL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L+   P +GR    + A N     +ID++YNANPAS+ AA+ +L+  +    GR
Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFT----GR 357

Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401
            + VLGD+ E+GE ++  H D+      +V +LY +
Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393


>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
 gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
          Length = 487

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 198/418 (47%), Gaps = 49/418 (11%)

Query: 7   FHDLLQAIQGHSIGIV---PQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             +LL A+Q  +   V   P  +V+     + +DSR + P   F A+ G   DGH ++  
Sbjct: 4   LDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYLPD 63

Query: 60  AVQKGAGLVVVNTDMVASIGS--------------------LSIP-----VFGVDDVLGA 94
            V++GA   +V+   +A++                       ++P        VDD L A
Sbjct: 64  VVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPLCA 123

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L + AV  R     T+I ITGSVGKT+TKE++   +S   +T     S+N+ I +P TL 
Sbjct: 124 LQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITLPATLL 183

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D    + E+GM   GEIRFL  L RPHI ++T + P+HL     IE IA+AKAE+ 
Sbjct: 184 GLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLERLGSIEAIANAKAELP 243

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--- 271
           E L   G   LN DD     +  ++ A     + ++G + +AD  +R  +  S   +   
Sbjct: 244 ESLPPDGWCILNADDPRVAAMAKRTPA----HVVTYGFAPHAD--VRAVEVISHGLYGIE 297

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + V  QG+   +    IG H A   L  +    ++  D +     L       G   R R
Sbjct: 298 LTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAIAAGLR----DPGERLRLR 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               Q   T+ID++YNA P S  AA+ VL++      GRRIAVLG+M E+G  ++  H
Sbjct: 354 VVNGQQGVTIIDDTYNAAPLSTIAALEVLAETP----GRRIAVLGEMLELGSATEEGH 407


>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
          Length = 450

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   I+ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAIKQNLAATDSIMLKGSNSMGLFEVVEQL 446


>gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
 gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
          Length = 482

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 187/385 (48%), Gaps = 27/385 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASI 78
           P     G++IDSR + P   F A  G   DG+DF L A++ GAG VV+  D    +VA  
Sbjct: 22  PDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDEVVAMA 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                 V   DD    L +LA   R R + T+I +TGS+GKTTTK++L   LS   + +A
Sbjct: 82  RDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSKRYRVHA 141

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+PLT+   P D    + E+GM+  GEI  LT   +P   +IT +  +H+ 
Sbjct: 142 TAGNYNNLIGLPLTILSAPADTQMLVLEMGMNDFGEISRLTACAQPTFGIITKVGTSHIG 201

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIF--------LNYDDSFFE-LLKAKSHALGIKTIYS 249
                E IA AKAEI EG+  +   F        L+ +D F   +++  +   GI  + +
Sbjct: 202 MLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYIIERYARPAGIDVVLA 261

Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI---VS 304
            G S + D      +   + ++  ++  +  S    H  I G     N L    +   + 
Sbjct: 262 -GTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPGAQSVPNALFAAAVAHRLG 320

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   ++D A  +L      E  G+R +         +ID+SYNA+P SM A + +L  + 
Sbjct: 321 VPAFEIDEAFASL------EMTGRRAQVRHAACGARVIDDSYNASPESMAAGLDLLGSLP 374

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389
             G   RIAVLG+M EMG+ +   H
Sbjct: 375 CSGT--RIAVLGEMGEMGDEAPRLH 397


>gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
 gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
          Length = 455

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 215/447 (48%), Gaps = 31/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   +GH+FI  A Q GA       ++         P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRNGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++IA  
Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G++  G I +   DS  +    ++     + +  FG  +  +    + ++ S  
Sbjct: 202 KMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFGDHQELNVTDIREEKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I+AL        R + 
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTE- 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G  S + H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDGLFLFIQS 439
             L + LS   I  +   G  +  L     +  P   HV +       +  + +   +Q 
Sbjct: 369 SQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFEDMVRQVQQ 427

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L   D +++K SNS G  +L+N L+E
Sbjct: 428 LLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
 gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 210/447 (46%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N + IDSR +     F A+KG  +D HDF+    ++GAG ++VN  +      +  P  
Sbjct: 30  INTVEIDSRKMVRGGLFIALKGEKFDAHDFVADVAKQGAGALLVNRRL-----EIDCPQV 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++   A+ KLA   R +SKA I+A+TGS GKT+ KEM    L     T    G++NN 
Sbjct: 85  VVENTRLAMGKLAAWVRQQSKARIVALTGSSGKTSVKEMTAAILCQRGHTLYTAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  +  F + ELG +H+GEI +   +  P  A++  +  AHL  F  +  +
Sbjct: 145 IGVPLTLFRLTEEHQFAVIELGANHIGEIAYTAEMTCPESALVNNLFAAHLEGFGSLAGV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKW 263
           A AK EIF GL   GT  +N D + +    +  S     + ++ F  S    ADF     
Sbjct: 205 AKAKGEIFAGLSSAGTAIINLDSNDWTHWQQGMSEP---QAVWRFAVSPVPEADFYATDI 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    +   +     ++EV     G H   N L    +   + A +      L    P 
Sbjct: 262 QEQPLATSFCLHTPIGNIEVTLPLPGKHNIANALAASALAISVGASLSDIRAGLLELKPV 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR    R A  +    ++D++YNAN  SM AA + LSQ+     G  + V+GDM E+G+
Sbjct: 322 SGRLFPIRLAEGK---IVLDDTYNANIGSMIAAANTLSQMP----GYHVMVVGDMGELGD 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF-LFIQSSL 441
            +   H  + E L+   I  +   G     + +   R  H  + +E +  L  L  Q  +
Sbjct: 375 QTVECHRQVGEALASTKIDKIMSVGEFSSHISETSGRGQHFANKAELVAALLPLLEQHEM 434

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +    +++K S S     ++N L E F
Sbjct: 435 IS---ILIKGSRSAAMEEVVNTLKENF 458


>gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
 gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 220/477 (46%), Gaps = 43/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   LLQ   G  I    Q  +   +S DSR I     F A+KG  +D HDF    V  G
Sbjct: 5   TLSQLLQVTHGRVINEGNQELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQVVDAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V+  +      ++ P   VDD   A+ +LA   R +SKA ++ +TGS GKT+ KE
Sbjct: 65  AAALLVDHQL-----DINCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGKTSVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L    KT    G+ NN IGVPLTL R+  D  F + E+G +H  EI + T++V+P
Sbjct: 120 MTASILVQRGKTLYTAGNLNNDIGVPLTLFRLTHDHQFAVIEMGANHPHEIEYTTNIVKP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              ++  +  AHL  F   E +A AK EI++GL   GT  +N  DS+ +  + K      
Sbjct: 180 EAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGTAIVNL-DSYSDKWQFKPRQTVW 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  YS  + ++ADF     +     +   +      +++     G H   N+L    +  
Sbjct: 239 R--YSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDITLPLPGMHNIANVLAASALSI 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A ++   + L+      GR    R   N+    +ID++YNAN  SM AAI+VL+ + 
Sbjct: 297 SVGATLEEISQGLASTKAVPGRLYPVRLGDNK---VVIDDTYNANDGSMIAAINVLATLP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLS----GFHV 411
               G RI V+GDM E+G  +   H           L +VLS+  +S +       G H 
Sbjct: 354 ----GYRILVVGDMGELGHYAHDCHQRVGIAAKQAGLDKVLSVGQLSEIISQSSECGEHF 409

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +D L R I            L  Q+ +V    ++VK S S     ++N L E F
Sbjct: 410 TVKQDLLTRLIP-----------LTQQNDVVS---ILVKGSRSSAMEDVVNALKECF 452


>gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 456

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 215/447 (48%), Gaps = 41/447 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG----- 87
           DSR +   + F  +KG   DGHDFI  A  +GA   +              PV G     
Sbjct: 32  DSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSER-----------PVAGGAYIL 79

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN I
Sbjct: 80  VDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEI 139

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+P T+  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA
Sbjct: 140 GLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIA 199

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K +I +GL+K G + +  D    E L A         +  FG   +AD  L + ++  
Sbjct: 200 QGKMQIADGLKKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERK 251

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +    +     + +++   G  Y+    M+     +    ++V  A +A S       R 
Sbjct: 252 DSLSFDCNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNR- 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             ++ A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S
Sbjct: 309 TEWKKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGANSKS 366

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFI 437
            H  +   L+   ++H++L G  + AL D   + I+    V+Y       +  + L   +
Sbjct: 367 MHGSMITSLNPEIVTHLFLYGQDMEALYD-YAKEIYPPGKVYYFIKNDEKDQFEQLTKAV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + +L   D +++K SNS    +L+  L
Sbjct: 426 RENLTPADQILLKGSNSMNLAKLVEDL 452


>gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895]
          Length = 452

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 219/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF  +A + GAG ++V+  +        +P  
Sbjct: 24  IDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVSRPL-----DCDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL   G   +N D++ +   +     +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIYTGLPVNGIAIMNADNNDWLNWQG---IIGDRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q     ++V+    G H   N L    +   + A +D AIK   + + K  
Sbjct: 256 TSHGTEFTLQTPTGDIDVLLPLPGRHNIANALAAAALSMAVGATLD-AIKT-GLANLKAV 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+ +   LN     L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G  S
Sbjct: 314 PGRLFPIQLNDNQL-LLDDSYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V  +G    A+ +A    +  H+++    L   + + + +  
Sbjct: 369 EACHVQVGEAAKAAGIDSVLSTGKLSQAIGNA--SGVGEHFADK-SALVARLNTLIAEHQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           +  ++VK S S     ++  L E
Sbjct: 426 IITILVKGSRSAAMEEVVRALQE 448


>gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 451

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 191/385 (49%), Gaps = 27/385 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV  GA  +
Sbjct: 8   ELAQVLDARLIG--EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAVAAGASAL 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V  ++      L+IP   V D L  L +L    R R    ++AITGS GKTT KEM T 
Sbjct: 66  LVEREL-----PLAIPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTTVKEMATA 120

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L       A  G++NN +GVPLTL R+     F + ELG +H GEI + T L +P  A+
Sbjct: 121 ILRQEGDVLATAGNFNNEVGVPLTLLRLEPQHRFAVMELGANHPGEIAWTTSLAKPDAAI 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D+ F+     K  A GI   +
Sbjct: 181 INNVAAAHLEGFGSLEGVFHAKSEIFEGLGEGGTAIVNADNEFW----PKWQARGIHCAF 236

Query: 249 SFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           S  + +   F  R      + C+E  ++ V  QG+ + +     G H   N L       
Sbjct: 237 SI-EDQRQPFHARNVVINQQGCAE--FVMVTPQGE-ISLTLAIPGRHNVANALAAAAGTL 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A + +    L +  P +GR     C    G  TL+D++YNA+  S+ A I  L+ +S
Sbjct: 293 ALGASLASVKAGLELMAPVKGR----FCVQRWGGLTLVDDTYNASVESVLAGIDALTAMS 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389
               G ++ V GDM E+GE S   H
Sbjct: 349 ----GYKVLVFGDMKELGEESAEQH 369


>gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 153/487 (31%), Positives = 220/487 (45%), Gaps = 33/487 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+QG  + G          S   DSR I     F AI G   DGHD++
Sbjct: 1   MMPM-SLEEIAQAVQGRLVAGTAAANTPVATSAFTDSRQIVEGSVFIAIAGERVDGHDYV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIA 112
            H   +GA   +V+ +    I    +P   V+D + AL  LA     R +A     T++ 
Sbjct: 60  PHVGAQGAVAAIVDHE----IADADVPQIVVEDTVLALGLLAKHNIERRRALGTPFTVVG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+++   LS +  T A +GS+NN IG+PLT  ++  +  F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLMKALLSHMGSTVAPVGSFNNEIGLPLTSLKVNAETRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIHGLVPGGLSVLNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIG 289
             + A +    +      G   N     +  + C E       L+   G+  EV     G
Sbjct: 236 AAMSAFAPGDVMWFGLPNGDGGNPAITAQHVR-CDELDHPSFTLKNGDGEHAEVTLGICG 294

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            H   N L    +   L   +D    ALS V      R         +  FTLID+S+NA
Sbjct: 295 QHNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTVNKQETSFTLIDDSFNA 354

Query: 349 NPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SMKA +  L +     E +  RIAVLG M E+G   +  H+ +        +  +  
Sbjct: 355 NPDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHVGIGRYALEGGVDALLT 414

Query: 407 SGFHVLALKDALPRSI-----------HVHYSETMDGLFLFIQSSLVD--GDVVVVKSSN 453
            G    A  DAL  ++           HV +   +D     +    V+  G VV++K S+
Sbjct: 415 VGSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTRLAVEHPGAVVLLKGSH 474

Query: 454 SCGFYRL 460
           + G   L
Sbjct: 475 ASGLSAL 481


>gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
 gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
          Length = 453

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  K + +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKNVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321
                 S+  V   G+    V  GI   M Q+ +      + L+ ++  ++  +   + H
Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+
Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H  + E  + +    V   G     + D         + + M  +   I+   
Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               V++VK +NS G  ++   L E+F
Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 452

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 16/377 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A +      L+      GR    +
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+ 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGTESEACHLQ 374

Query: 392 LAEVLSLYNISHVWLSG 408
           + E      I  V  +G
Sbjct: 375 VGEAAKAAGIDRVLSTG 391


>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 468

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 219/468 (46%), Gaps = 12/468 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A  G  +G  P   V+G+S D+R++A  + F A+KG  +D HD +  A 
Sbjct: 7   TPHFTSDELAAATGGRWLG-APPAAVDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +   P   V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSGAWAAAHPAPPRPALAVADTLAALGAIARFHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     +E +A AKAE++EGL   G   +N DD+   +LK +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADDA--RMLK-RGVA 242

Query: 242 LGIKTI-YSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            G + + ++ G+ +  D   L    Q  E     + +  + + V   G+           
Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302

Query: 300 LGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +I     D  I + L+   P    G+R R         L+D+ YNANPASM AA+ 
Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAALE 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD 416
           VL  ++     R +AVLGDM E+G      H  L    +   ++ +   G      A   
Sbjct: 360 VLRDLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAATAGVAVLAAFGPRARATAEAA 419

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    ++E +D L  F++  L   DV++VK S      RL+  L
Sbjct: 420 RAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEAL 467


>gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
          Length = 454

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 21/447 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R+I     F A+ G  +D H+F   A + GAG ++V   +      ++ P  
Sbjct: 24  IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRL-----DVNAPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA       +   +AITGS GKTT KEM+   L          G++NN 
Sbjct: 79  VVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  IE +
Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPVIALVNNVAAAHLEGFGSIEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
             AK EI++GL+  G   +N D +   L ++    L  K + +F   +  ADF       
Sbjct: 199 KQAKGEIYQGLQAGGIAIVNLDSNGDALWQS---VLADKKVITFSHNNSQADFYASNVTM 255

Query: 266 CSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             E      + +    + +E+    IG H   N +    I   + A V+     L   + 
Sbjct: 256 NEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASIIALHMGATVEEIQFGLLNLNK 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    + +       LID+SYNA+  +MKAA+ +L        G+R  +LG+M E+G
Sbjct: 316 VKGRVDVEQLS---STIKLIDDSYNASVPAMKAAVDLLGAF----HGQRWLILGNMAELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSL 441
           E S + H  + E  +     HV   G     + + L   IH   + E +D +   +  ++
Sbjct: 369 EESLALHRQVGEHAAPQKFEHVLTYGADAKIISE-LCHGIHFETHQEMIDYIKQHLDQTV 427

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            D   ++VK +N    + +   L E F
Sbjct: 428 SDQHTILVKGANGARMFEVAAALKEYF 454


>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
 gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
          Length = 450

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFELSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   ++ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYFEKEKNKLIEAVKQTLESTDSIMLKGSNSMGLFEVVEQL 446


>gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK353]
          Length = 456

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 214/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  +D   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SDRPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  AAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    A+     ++ S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVAEA-AITQSFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 ASNGA--DILSDVYNANPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 35/447 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +   P  
Sbjct: 29  IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVEGHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A   LA     + +  +IA+TGS GKTTTK+M+   LS+  KTY   G+YNN 
Sbjct: 79  LVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +PHI V+T I  AHL  F   E+I
Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I +   DS  +    +S     + +  FG    A+  ++  ++ 
Sbjct: 199 AKGKLQIVDGMDSDG-ILIAPVDSIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +       +  + + +     G + A N ++   +  +L    D  ++AL        R
Sbjct: 251 KDSLTFTTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   S+I  +  G++IAVL DM E+GE S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437
             H  +   LS   +  +   G  +  L     +      V+Y       +  D +   +
Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPLGKVYYFKKTADEDQFDDMLKTV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Q+ L   D +++K SNS    +++  L
Sbjct: 426 QTVLQPADQILLKGSNSMHLAKVVEAL 452


>gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
 gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
          Length = 452

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 219/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q+   S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQIPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
 gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
          Length = 453

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 217/449 (48%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  ISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELEADCSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   +  + + ELG +H+GEI + T LV+P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL +     ++ D +  E  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLREGAVAIVSLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S+  V L G+ ++V    IG H   N L    +   + A +      L+  H  
Sbjct: 256 NALGVASFTLVTLIGE-VDVELGIIGQHNVANALAAAALSLEMGASLAEIRHGLA--HLS 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+     L +    LID+SYNA+  +MKAA+ +L   S      R  +LG+M E+G+
Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +    V   G     + D        H+  T   +  FI+  +  
Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423

Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468
                 V++VK +NS G  ++   L E+F
Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 452

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 16/377 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A +      L+      GR    +
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+ 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374

Query: 392 LAEVLSLYNISHVWLSG 408
           + E      I  V  +G
Sbjct: 375 VGEAAKAAGIDRVLSTG 391


>gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
 gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
          Length = 453

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 216/449 (48%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  ISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELEADCSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   +  + + ELG +H+GEI + T LV+P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL +     +N D +  E  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S+  V   G+ ++V    IG H   N L    +   + A +      L+  H  
Sbjct: 256 NALGVASFTLVTPIGE-VDVELGIIGQHNVANALSAAALSLEMGASLAEIRHGLA--HLS 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+     L +    LID+SYNA+  +MKAA+ +L   S      R  +LG+M E+G+
Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +    V   G     + D        H+  T   +  FI+  +  
Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423

Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468
                 V++VK +NS G  ++   L E+F
Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
 gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
          Length = 451

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 194/385 (50%), Gaps = 27/385 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L Q +    IG    G +  +S D+R++     F A++G  +D HDF   AVQ GA  +
Sbjct: 8   ELAQVLDARLIG--DDGEITVVSTDTRTLGAGALFVALRGERFDAHDFCEQAVQAGASAL 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V  ++      L+IP   V D L  L +L    R R    ++AITGS GKTT KEM T 
Sbjct: 66  LVEREL-----PLAIPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTTVKEMATA 120

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L +  +  A  G++NN +GVPLTL R+     F + ELG +H GEI + T L +P  A+
Sbjct: 121 ILRNEGEVLATAGNFNNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSLAKPDAAI 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D+ F+   + +    GI+  +
Sbjct: 181 INNVAAAHLEGFGSLEGVFHAKSEIFEGLSEGGTAIVNADNEFWPKWRER----GIQCAF 236

Query: 249 SFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           S  + ++  F  R      + C+E  ++ V  QG+ + +     G H   N L       
Sbjct: 237 SI-EGQSQPFHARNLVLNERGCAE--FVMVTPQGE-LSLTLAIPGRHNVANALAAAAGCL 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A + +    L    P +GR     C    G  TL+D++YNA+  S+ A I  L+ + 
Sbjct: 293 ALGASLGSVKAGLEQMAPVKGR----FCVQRWGGLTLVDDTYNASVESVLAGIDALTAMG 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389
               G ++ V GDM E+GE S   H
Sbjct: 349 ----GFKVLVFGDMRELGEESAEQH 369


>gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 460

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 191/396 (48%), Gaps = 38/396 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPV 85
           V  IS D+R       FFA+KG H+D H+++  AV +GA  LVV   D       +S+P 
Sbjct: 25  VENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVAQGANALVVERADT-----QISVPQ 79

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGS 142
             V D   AL +LA   + +     +A+TGS GKTT KEM    L S   +++     G+
Sbjct: 80  LIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKTTVKEMTASILQSAVGVEQVLFTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H GEI + T LV+P++A++  +A AHL  F  
Sbjct: 140 FNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAYTTGLVQPNVALVNNVAAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
           +E +A+AK EI+ GL+  G   +N +  +       +  +G   +  F    N ADF   
Sbjct: 200 LEGVATAKGEIYRGLQPDGVAIINKEHDYRSTW---AQDIGAHRVQYFAYQDNTADFYAD 256

Query: 262 K---------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                     +  C+ Q    + L           +G H  +N L    +   + A +  
Sbjct: 257 NVIFHEAGSTFDLCTPQGKTTIHLP---------YLGEHNVKNALAASALAMNVGATLAQ 307

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L V    +GR    +   N     L+D++YNAN  S+++AI VL +     +  RI
Sbjct: 308 IKQGLEVRTQVKGRLYPVQPCDN---LLLLDDTYNANVDSLQSAIRVLQKY----DAFRI 360

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            V+GDM E+GE SQ  H  +AE      +  V+  G
Sbjct: 361 LVVGDMAELGENSQICHQQVAECAKAAKLERVYSFG 396


>gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
 gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
          Length = 476

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 207/444 (46%), Gaps = 29/444 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89
           DSR   P   + A  G   DGH F+  A  KGA         VA++ S  +   P   VD
Sbjct: 36  DSREAEPGSLYVARIGESMDGHQFVGAARDKGA---------VAALTSRPVDELPCVVVD 86

Query: 90  DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DV  A   ++ A   R +  T+I ITGS GKT+TK++L   L +   T A +GSYN+ +G
Sbjct: 87  DVQAAFVAISRAVLERATDLTVIGITGSSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVG 146

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+ R+  D  F + E+G   +G I +LT +  P I V+  +  AH+  F   E IA 
Sbjct: 147 VPLTVTRVTADTRFLVVEMGARGIGHINYLTRIAPPQIGVVLNVGTAHVGEFGSREAIAR 206

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AKAE+ E L   G   LN DD     +  ++ A     +   G++  A  +       S+
Sbjct: 207 AKAELVEALPSDGVAVLNADDPVVRAMADRTSA----RVVLVGEAAEAAVRAEDVTVGSD 262

Query: 269 -QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++   V        +    +G H   N L  L +       +DTA  +++    + G  
Sbjct: 263 GRATFRVTTPAGGATIALRLVGRHHVGNALAVLAVALECGIPLDTATTSIA----EAGIV 318

Query: 328 KRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGEL 384
            R+R  + +     T+++++YNANP SM+AA+S L  +   GEGRR  AVLG M E+G+ 
Sbjct: 319 SRWRMEVTERPDGVTVVNDAYNANPDSMRAALSALESM---GEGRRTWAVLGSMLELGDE 375

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443
           S + H ++        +  + + G     + D  P     + +    D     +++ +  
Sbjct: 376 SDTDHAEVGAEAQQRGVDELLVVGETARPMADIRPVDGTRIRWVADADAAEALLRAEVAP 435

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
            DVV+ KSS   G   L + L  E
Sbjct: 436 PDVVLFKSSRDAGLRWLGDRLTAE 459


>gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
 gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
          Length = 428

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 189/385 (49%), Gaps = 23/385 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     +FA+ G  ++G+DF + A+  GA   VV+    A        ++ V 
Sbjct: 16  VSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVD---AAKYKDHPGCIY-VA 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL  L    R   KA +I++TGS GKTTTKE++   LS    T A +G+ NNHIGV
Sbjct: 72  DVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL+L  +    +F + E+G +H  EI FL  L +P    IT    AHL  F G++ +   
Sbjct: 132 PLSLLNIKESTEFAVIEMGANHQKEIEFLCALAQPDFGCITNFGKAHLEGFGGVQGVIKG 191

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K+E+++ L     TI  N +D      L+   H++      SFGK + + +     K   
Sbjct: 192 KSELYQYLIANNKTILYNNEDPIQAGALRQYDHSI------SFGKDQESTYTTSILK--- 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             + +++Q Q  ++    +G   + A N ++   I       +     A+  + P   R 
Sbjct: 243 SNTSVKIQFQDTTINTSLYGA--YNATNCMIAASIGRHFDVPIQDIKNAIESYKPNNNRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +     G   L+ ++YNANP+SM+ AI   S+++      +I VLGDM E+GE +  
Sbjct: 301 ELRQI----GPHMLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIVVLGDMFELGETAAK 356

Query: 388 FHIDLAEVLSLYNISHVWLSG--FH 410
            H  +   L L  I+ + L G  FH
Sbjct: 357 EHQAIVAQLKLSKINRIILIGALFH 381


>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
 gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
          Length = 463

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 208/446 (46%), Gaps = 27/446 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++IDSR +     F AIKG   DGH FI   + +GA   +   D+    G ++ P   V 
Sbjct: 31  VAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMDQGAICSLSEQDL----GDVTYPYIQVA 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
               AL  LA   R      ++ I+GSVGKT+TKEM+   LS         G++NN IG+
Sbjct: 87  SCTEALKDLAEHYRRSLDIKVVGISGSVGKTSTKEMIASVLSEKYCVLKTEGNFNNEIGL 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  +  + +  + E+G+SH G++  L  + RP + VIT I  AHL N    + I   
Sbjct: 147 PLTVFNLRKEHEVAVLEMGISHFGDMEPLAKIARPDVCVITNIGYAHLENLGTRDGILKE 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F+ +   GT+ LN DD   + L+  +   GI+ +Y FG      F   + ++   +
Sbjct: 207 KTSMFDFMNPDGTVILNGDD---DKLRGYTSERGIQPVY-FGLDPACPFHAEQIQKMGLK 262

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +   +   S    H  I G HM  N L  + +   L    +  I+ +    P  GR  
Sbjct: 263 GTVATFVTPSSSFSAHVSIPGDHMISNALAGVAVGYALGMKDEEIIRGIEKLVPIAGRNN 322

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +    +T+ID+ YNANPASMK+++ VL+      + R +A+LGDM E+G   +  
Sbjct: 323 ----LIEAEHYTIIDDCYNANPASMKSSLDVLA----FADTRTVAILGDMGELGADEKKM 374

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----------VHYSETMDGLFLFIQ 438
           H ++        IS +   G     + +A   +            V++ +T +  +  + 
Sbjct: 375 HAEVGSYAVKKGISLLICIGTLSAEMANAARTASEASSDSDTKTLVYHFDTKEAFYRQMD 434

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
             L + D V+VK+S+   F  ++  L
Sbjct: 435 QLLKEQDTVLVKASHFMEFPEIVKRL 460


>gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 452

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 194/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+       AIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLAAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 456

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 190/386 (49%), Gaps = 30/386 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 26  DGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+     R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+ +IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260
           G + I  AK EI EG+E +GT  LN +D  F + + ++    I T      + +    +L
Sbjct: 197 GPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASEL 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +      M+  L   S +V  + +G H   N L        L   ++  +  L+  
Sbjct: 257 SRDARGCPSFTMDSPL--GSAQVQLNLLGTHNVTNALAAAAAAGALGVSLEGIVAGLNNV 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR       +      +ID++YNANP S+ AA+ +L+  +    GR + VLGD+ E
Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367

Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401
           +GE ++  H D+      +V +LY +
Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393


>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 454

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 211/448 (47%), Gaps = 25/448 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  ++G+SIDSR+I     F   KG + DGH F+  A++ GAG      D       +  
Sbjct: 23  QHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGAGAAFYQNDAKPD-HEIEG 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  VDD L AL +LA A        +IA+TGS GKTTTK+M+   L    K     G+Y
Sbjct: 82  PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSNGKTTTKDMIESVLKPAFKVKKTQGNY 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P IAVIT I  +H+ +    
Sbjct: 142 NNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPDIAVITNIGESHMQDLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI  GL+  G    + D+    LLK     L      S G +++        
Sbjct: 202 EGIARAKFEIVSGLKPGGVFIYDGDEP---LLKPHVDTLKDTEAISIGLAQDNSV----- 253

Query: 264 KQCS--EQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             CS  +   M +     + E  H+ I   G H  +N  + + I  IL    +   + +S
Sbjct: 254 -VCSVEQHDAMGIAFTLNTNE--HYQIPILGTHNMRNAAIAISIGKILGLSYEEIQENIS 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R + +R   N    ++I+++YNA+P SMKAAI  L+ +    +GR+I +L D+
Sbjct: 311 KVKLTGMRMELHRTDSN---ISVINDAYNASPTSMKAAIDTLAAM----DGRKILILADV 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFI 437
            E+GE S   H  + + L    I+ +   G   + + +    ++   H+    + L  FI
Sbjct: 364 LELGENSAEMHASVGDYLQDKGINLLLTFGDEAVHIYENGKANVDEAHHFNHKNELIEFI 423

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  D +++K S       + + L+
Sbjct: 424 TQHAQAEDEILIKGSRGMKLEEVSDALI 451


>gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
 gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
          Length = 453

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 200/389 (51%), Gaps = 25/389 (6%)

Query: 10  LLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GL 67
           LL++I +G  +    +GF +G+S D+R       F  +KG  +DGH FI  A++ GA G 
Sbjct: 7   LLKSIAKGSRLKEDRRGF-SGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGA 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    + V      +  ++ V+D L AL  LA A R +    +I ITGS GKTTTK+++ 
Sbjct: 66  LWKEQEPVPEQLPETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVA 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+     +   G+ NNHIGVPLTL  MP D  + + E+GM+H GEI  LT + +P+ A
Sbjct: 126 SVLAGTAAVHKTKGNLNNHIGVPLTLLAMPEDCTYAVVEMGMNHAGEISTLTQIAKPNAA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT+I  AH+ +    E IA+AK EI +GL K   +  + D+        ++        
Sbjct: 186 IITSIGDAHIEHLGSREGIAAAKMEIADGLIKESWLLFDGDEPLLSPYNEQAET------ 239

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL- 306
            + G S  A  ++   K   E  ++   L G   ++    +G H  +N    + +   L 
Sbjct: 240 -TVGFSDQAATKISDVKTL-ENGYV-FYLNGARWQLTM--LGKHNVKNAAYAILLAQKLG 294

Query: 307 --TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A +   + +L++       G R          T+I+++YNANP SMKAAI  + ++ 
Sbjct: 295 FSNAMIQKQLSSLAI------TGMRLEKLKGPNGSTIINDAYNANPTSMKAAIETVKEL- 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           PH + RR+ VLGD+ E+G+  ++ H  +A
Sbjct: 348 PHYK-RRVLVLGDIYELGQDEEALHKSVA 375


>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
 gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
          Length = 472

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 214/474 (45%), Gaps = 74/474 (15%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+  DSR+I P   F  I G  +DGH+F    +  GAG      D         +P+
Sbjct: 26  IIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASGAGAAFWQRDHQPVP---DLPL 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL  LA A    + A ++ ITGS GKTT K+M++  L +  K +   G+YNN
Sbjct: 83  ILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKDMVSALLETTYKVHKTQGNYNN 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  M  D D  + E+GMS   EI  L+ + RP + VIT I  AH+      EE
Sbjct: 143 HIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSREE 202

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNAD----- 257
           IA AK EI  G++  G +  + D+   + + A+   +   G+ T ++FG  +  D     
Sbjct: 203 IARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKPEGLNT-FTFGNQETNDDYPTG 261

Query: 258 --FQLRKWKQCSEQSWME---VQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIV 303
             F  R     S +   E   + L G+              H GIG    ++    L + 
Sbjct: 262 LMFHARGIIFTSNRHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFANLKLS 321

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S+    V+T                           T+++++YN++P ++KAA+ VL  +
Sbjct: 322 SMRIEAVETPFG-----------------------VTVLNDAYNSSPTAVKAAVDVLGDM 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G  +RIAVLGDM E+G+    FH ++ + LS  N   V+  G          P S+H
Sbjct: 359 K--GYRKRIAVLGDMLELGQREGEFHAEIGDYLSPDNADLVFTYG----------PLSVH 406

Query: 424 VHYSETM---DGLFL-------FIQSSL---VDGDVVVVKSSNSCGFYRLINLL 464
                 +   DG  L        I S L    + D+V+VK+S       +++ L
Sbjct: 407 TAERAKLRFPDGAVLSFTDKEKLIASVLEHVSEKDIVLVKASRGMRLEHVVDAL 460


>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 493

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 198/401 (49%), Gaps = 30/401 (7%)

Query: 9   DLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++ QA+ G  +   GI   G        DSR +     F AI G   DGHDF+     +G
Sbjct: 8   EIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQG 67

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGK 119
           A   +V+ + VA  G   +P   VDD + AL +LA     R +A     T+I ITGSVGK
Sbjct: 68  AVAALVDHE-VADAG---VPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H+GEI  LT
Sbjct: 124 TTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHVGEIANLT 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D     +    
Sbjct: 184 SLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHVAAMSGI- 242

Query: 240 HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV--VHHGI-GYHMAQN 295
            A G    +   + +  D  +     +C E      +L+    E   V+ GI G H   N
Sbjct: 243 -APGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANP 350
            L    +   L   +D     L+       R   +R A++     +  FTLID+S+NANP
Sbjct: 302 ALAAATVAHRLGMPLDRIAAGLADVK----RISPHRMAVSAIVKPEARFTLIDDSFNANP 357

Query: 351 ASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFH 389
            SMKA +  L +   + E +  RIAVLG M E+G   ++ H
Sbjct: 358 DSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALH 398


>gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 400

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 213/430 (49%), Gaps = 39/430 (9%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           FFA+KG +++G+ F   A++KGA  V+++ ++  +  S +I V   ++VL  L +LA   
Sbjct: 2   FFALKGDNFNGNTFSTEALKKGAKYVIID-ELEYNTSSQTILV---ENVLETLQQLATYH 57

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      II +TGS GKTTTKE++   LS    T A  G+ NNHIGVPLTL  M  D + 
Sbjct: 58  REYLNIPIIGLTGSNGKTTTKELINTVLSKKYNTTATKGNLNNHIGVPLTLLSMTKDTEI 117

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221
           GI E+G +HL EI FL+++ +P    IT    AHL  F  I+ + + K+E++  L     
Sbjct: 118 GIVEMGANHLKEIEFLSNIAKPDFGYITNFGKAHLEGFGSIQGVINGKSELYNYLITYKK 177

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWME----V 274
            IF N DD+   +   K     +K+ +S               Q   Q   +++E    V
Sbjct: 178 HIFFNADDT---IQNEKLSNYNLKSGFS--------------NQTQNQLNINFLEANPFV 220

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L+ +   +    IG +   N+   + I S           A+  + P   R +     +
Sbjct: 221 TLKFQDQIITSQLIGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNNRSQ----II 276

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N+    +I ++YNANP SMKAA+   S ++      +IA LGDM E+G+ +Q+ H ++ +
Sbjct: 277 NKNSNKIILDAYNANPTSMKAALENFSNLNA---TYKIAFLGDMFELGDEAQAEHQNITD 333

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +++  NI+ V+L G +  + K     +  +   +T + L     +  +    +++K S  
Sbjct: 334 LITTLNINTVYLIGTNFNSTK---TENKKIKQYKTFEALKKSFNTIDITNATLLIKGSRG 390

Query: 455 CGFYRLINLL 464
               R+++L 
Sbjct: 391 MALERIVDLF 400


>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
 gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
          Length = 470

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 211/457 (46%), Gaps = 18/457 (3%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+L A +    +G      +  + IDSR++ P   F  I G  +DGH+F   AV KG
Sbjct: 4   TLSDILTATKAVGDVGERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +  +         PV  V D + AL  LA A R +  A ++ +TGS GKTT KE
Sbjct: 64  AAAVLADRPLTGL--PDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVKE 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L  +  T     ++NNHIG+PL++        + + ELG+S  GE+  L  +  P
Sbjct: 122 LTAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDAYWVMELGISRPGEMEPLAAIAEP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF--LNYDDSFFELLKAKSHAL 242
            +AVI  + PAHL     +  +A+ K ++F  L   G     ++Y + +   L       
Sbjct: 182 DVAVIHNVGPAHLEALGDVAGVAAEKTKLFNFLRPGGVALASMDYPELWEAALAVFPRVR 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G+ T    GK ++A ++ +      E +    ++L    MEV     G H A+N+L    
Sbjct: 242 GLST-KGQGKGRSAPYRAKYLGALPEGRGRFFLKLGELEMEVETPLTGGHFAENILAAAT 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              IL A        L      E   +R+ C   QG +T+ID++YNANP SM+ AI+   
Sbjct: 301 SAHILGAGEKQIAAGLETAVMPE---QRFYC-RRQGCYTIIDDTYNANPLSMRRAIAAAV 356

Query: 362 QISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +   +G+ +  VLG+M EMG  ++  H  L E  +      V+  G H  A+ + L R
Sbjct: 357 ETA---QGKPLVLVLGEMREMGAHAEEEHAKLGEAAAASGARAVFYRGAHAEAVGEGLTR 413

Query: 421 SIHVHYSETMDGLFLF---IQSSLVDGDVVVVKSSNS 454
             +      +D    F   + +  + G V + K S S
Sbjct: 414 GGYAGRFAVVDTPAAFCDMLAAMDLRGGVFLFKGSRS 450


>gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK150]
          Length = 456

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 214/443 (48%), Gaps = 33/443 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I P   F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++       
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYR 331
           E     + +++   G  Y+    M   +   + L   V  A  A +    K  R +  ++
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAM---IAAYAALQEGVSEAAIAQAFSELKLTRNRTEWK 312

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  
Sbjct: 313 KAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGS 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSL 441
           +   L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L
Sbjct: 371 MITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKL 429

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
              D +++K SNS    +L+  L
Sbjct: 430 TPTDQILLKGSNSMNLAKLVEDL 452


>gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 423

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 189/384 (49%), Gaps = 25/384 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ D+R       FF ++G  ++G++F+  A++KGA  VV N    + +    +    V
Sbjct: 13  GVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQAIL----V 68

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L +LA+  R      IIA+TGS GKTTTKE++   L+   +T    G++NNH+G
Sbjct: 69  EDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNFNNHLG 128

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + D  I E+G +H GEI  L  +  P    IT    AHL  F   E +  
Sbjct: 129 VPLTLLRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYITNFGRAHLEGFGSFEGVIQ 188

Query: 209 AKAEIFEGLEKTGT-IFLNYDDSF-FELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264
           AK+E++  L+K    IF   D+     LL       G    YSF    +K A+ QL  +K
Sbjct: 189 AKSELYNYLKKDNKRIFFCQDNEIQVRLLN------GYSNTYSFSMEGNKKANLQLSLYK 242

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +      + V+L  +   +  H IG + A N+   + I +      +  I  +  + P  
Sbjct: 243 ES-----LLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKEAIIHGIEGYIPTN 297

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +    A   G   L+D +YNANP+SM AAI    +I       +I +LGDM E+G+ 
Sbjct: 298 NRSQFVEKA--HGNKILMD-AYNANPSSMHAAIEAFKEIPS---ANKILILGDMKELGDY 351

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408
           S + H  L   ++LY    V L G
Sbjct: 352 SPAEHQQLVNDIALYPWEAVLLVG 375


>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
          Length = 464

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 222/473 (46%), Gaps = 33/473 (6%)

Query: 11  LQAIQGHSIG-IVPQGFVNGI---SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           +QAI     G I+ +G V+ I   S D+R+I     F  + G  +DGH FI  A++ GA 
Sbjct: 6   IQAIARACNGTIIKKGSVDTIGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQ 65

Query: 67  LVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            V V    NT  + +     + +  V D L AL  ++V  R       I +TGSVGKT+T
Sbjct: 66  AVFVQEGHNTKTIQAFND--VWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTST 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++++  LS     +  +G++NN IG+PLTL  +  +    + E+GMS  GEIR L  +V
Sbjct: 124 KDLISGVLSGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGEIRDLVDMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I  +H+ +    E I  AK EI    ++   + +N DD +   +       
Sbjct: 184 HPEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDDEYLRCIHKDDKDY 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              T+  +G S   DF     +   E+ S   V++ G+++      +G H   N L  + 
Sbjct: 244 ---TVIFYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVW 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   + L  F P + R +     + +G   +I+++YNA+P SMKAA+ VL 
Sbjct: 301 IGLKYHMTFEEIQRGLDGFQPSKMRLE----VITKGRMKIINDAYNASPDSMKAALDVLD 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
            +  +   R+IAVLG+M EMG  S+  H  +    +  NI  +   G       + A K 
Sbjct: 357 HMKSN---RKIAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGEMANWIGLEAKKY 413

Query: 417 ALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +  +   H     E ++ L  F+Q      D ++VK S       ++N L E
Sbjct: 414 GIEENSIRHVFNNKEAIEMLGQFVQEE----DAILVKGSRGMAMEEIVNFLQE 462


>gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
 gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
          Length = 457

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 227/473 (47%), Gaps = 31/473 (6%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVQRKL-----DLNITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R     D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +  K     L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWK---DVLA 236

Query: 244 IKTIYSFGKSKN-ADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            K + +F +S + AD+    +R  +Q   ++  ++Q    +++V    IG H   N L  
Sbjct: 237 DKNVLTFSESDDTADYFATNIRINEQG--EACFDMQTPQGAIDVELGIIGQHNVANALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +     A +      L+     +GR +  + + N     LID+SYNA+  +MKAA  +
Sbjct: 295 AALSIQFGATLAEIKSGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS      +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +   
Sbjct: 352 LSSF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCN 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +   H++ T + +   I+  L   +     ++VK +NS G  ++   L E F
Sbjct: 408 GT---HFA-THEAMIAHIEQHLSLPENAPHTLLVKGANSAGMSKIAAALKENF 456


>gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
 gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
          Length = 495

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 223/463 (48%), Gaps = 46/463 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           IDSR + P + F A  G H DGHDF+  A   GA L +V TD  A+    S+P   VDDV
Sbjct: 33  IDSREVGPGDLFAAFLGEHVDGHDFLDAARTAGAALSLV-TDAAAA-AEHSLPAVRVDDV 90

Query: 92  LGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             AL  LA A          +  ++A+TGS GKT TK++L   L S   T A +GS+NN 
Sbjct: 91  RDALAALARAQLARARQENPQLVVLAVTGSAGKTGTKDLLGTILRSAGPTVAPVGSFNNE 150

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLT+ ++  +  F + E+G   +G I  LT + RP ++++  +  AHL  F  ++ I
Sbjct: 151 LGLPLTVLQVTGETRFLVLEMGARGIGHIAELTEIARPDVSLVLNVGSAHLGEFGSVDAI 210

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+ + L   G   LN +D     +  +S A  +   ++ G  + A+  L      
Sbjct: 211 ARAKGELVDALAPGGRAILNAEDRLVAAMAERSAAPVVTWGFTTGDVRGAELTL------ 264

Query: 267 SEQSWMEVQLQGKSMEVVHHG--------------IGYHMAQNMLMTLGIVSILTADVDT 312
            EQ+ +   L+  +     HG              +G H  Q   +   + + L A VD+
Sbjct: 265 DEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGEH--QAANVLAALTAALMAGVDS 322

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR- 371
           A    ++       G+R +  L  G   +ID++YNANP S++ A+  L+ +     GRR 
Sbjct: 323 ASATAALDGATLASGQRMQV-LRAGGALIIDDAYNANPDSLRQALKTLAHL-----GRRH 376

Query: 372 --IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIH 423
             IAVLG+M E+G  +   H ++  +    NI  +++ G       H  +L+ +      
Sbjct: 377 RTIAVLGEMLELGPDTVRLHDEIGRLAVRLNIGQLYVVGEGAAPIHHGASLEGSF--GGE 434

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             Y +T++     ++  +  GD V++KSS   G  R+   L+E
Sbjct: 435 SEYLDTVEEAIAVLERIVQPGDAVLLKSSRDAGLRRIAAPLVE 477


>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 419

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 179/364 (49%), Gaps = 35/364 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +NG+  D+R       F A+ G ++D HD+I HA + GA  ++ +  +       ++PV
Sbjct: 24  IINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAVAIIASKQV-----KTNLPV 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD   AL+ +A       K T++AITGS GKTTTK ML   L+    T    G+ NN
Sbjct: 79  IKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNMLANILNLKAPTLKTQGNLNN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVP+TL  +     F + E+G +HLGEI+ L  +  PHIAV+T    AH+  F G   
Sbjct: 139 HLGVPMTLLMLEPKHQFAVIEMGANHLGEIKHLRDITHPHIAVVTNTLDAHIGEFGGFNN 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK EI+    +     +N + +F   +             SFGK  +       +  
Sbjct: 199 LVKAKGEIYHTNSQN---IVNTNTTFTGDI-------------SFGKDGDV------FAS 236

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                  ++ ++ + + V    +G H  +N L        L  D++T  K L     ++G
Sbjct: 237 NINSHQFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYALDIDINTIKKGLEKTQAEKG 296

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R       +++   T+ID++YNA+P SM+AAI  L       +G +IAVLG M E+G  S
Sbjct: 297 R----LTIIHRQGLTIIDDTYNASPQSMRAAIDALLSF----DGEKIAVLGSMAELGNDS 348

Query: 386 QSFH 389
           ++FH
Sbjct: 349 KTFH 352


>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
 gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
          Length = 453

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 218/448 (48%), Gaps = 25/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320
                 S+  V   G   EV V  GI   M Q+ +      + L+ ++  ++  +   + 
Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E
Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S + H  + E  + +    V   G     + D         + + M  +   I+  
Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V++VK +NS G  ++   L E+F
Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
          Length = 455

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD+I +AV  GA   +   D  
Sbjct: 13  GCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYIANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 12P80B1]
          Length = 494

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         S+ V    IG H   N L        L   ++   K L    P +G
Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKG 356

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +
Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
              H  L   L+L  I HV+  G H+     A+   + I  HY++
Sbjct: 409 DDEHTKLGHQLALLEIDHVFTLGNHMAHTAAAINEQKPIARHYTD 453


>gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 456

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 185/372 (49%), Gaps = 25/372 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 26  DGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVEGA----ALPQLV 81

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+     R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 82  VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+ +IT    AH+  F 
Sbjct: 137 NLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260
           G + I  AK EI EG+E +GT  LN +D  F + + ++    I T      + +    +L
Sbjct: 197 GPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASEL 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +      M+  L   +++V  + +G H   N L        L   ++  +  L+  
Sbjct: 257 SRDARGCPSFTMDSPL--GNVQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +GR       +      +ID++YNANP S+ AA+ +L+  +    GR + VLGD+ E
Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367

Query: 381 MGELSQSFHIDL 392
           +GE ++  H D+
Sbjct: 368 LGEWAEQGHHDV 379


>gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
 gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
          Length = 456

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 209/444 (47%), Gaps = 35/444 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89
           DSR I   + F  +K    DGHDFI  A + GA         VA++    +   P   VD
Sbjct: 32  DSRLIGKGDLFVPLKVAR-DGHDFIETAFENGA---------VATLSEKEVEGHPYLLVD 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVLGA  KLA     +S+  ++A+TGS GKTTTK+ML   LS+  KTY   G+YNN IG+
Sbjct: 82  DVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKDMLAQLLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP   +  + E+G  HLG+I  L+ +  P  A++T I  AHL  F    EIA  
Sbjct: 142 PYTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHPKAAIVTLIGEAHLEFFKDRTEIAKG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G+   G + +  D    + L  +      + +  FG+   AD ++ K  +  + 
Sbjct: 202 KLQIADGMPAGGLLLVPADPIVEDFLPNQ------QELVRFGEG--ADIRITKLDERKDS 253

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E     +++++   G  Y+    M+ +   V++     + AI+A   F   E    R
Sbjct: 254 LTFEANFLEEAIDLPVTG-KYNATNAMIASY--VALKEGVSEEAIRA--SFKGLELTKNR 308

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      ++ + YNANP +M+  +   S I  +  GR++AVL DM E+GE S   H
Sbjct: 309 TEWKKAGNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQSIDLH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFIQSS 440
             +   LS   +  V   G  +  L     +     HV+Y       +  + L   ++ S
Sbjct: 369 NQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDLVKQVKES 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L + D +++K SNS    +L+  L
Sbjct: 429 LKEQDQILIKGSNSMNLAKLVEEL 452


>gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
 gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
          Length = 465

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 212/464 (45%), Gaps = 65/464 (14%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L +A QG  + G +PQG +  I  DSR     + F A+KG  +D HDF+     +
Sbjct: 14  WTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTT 121
           G  + +V   +   I  L      V D   AL  L  A R +  A   +IA+TGS GKTT
Sbjct: 74  GCQIAIVEHPIDVDIAQLV-----VKDTRLALGDLG-AYRRKQNAHLKVIALTGSSGKTT 127

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + ++L
Sbjct: 128 TKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNL 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+PH+A I  I  AHL  F G E I  AK+EI+  +   G   +   D F   ++  + A
Sbjct: 188 VQPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGVAIVPAADDFTADIRNSAQA 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGY 290
               +  SFG             Q  +    E++L+ +S+    H             G 
Sbjct: 248 ---HSNLSFG-------------QGGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGE 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNAN 349
           H  QN          +  ++D  ++ L     ++ +G + R    Q    L ID++YNAN
Sbjct: 292 HNVQNATAATAFALAIGIELDDIVEGL-----EQAQGAKGRLNFIQHQNHLFIDDTYNAN 346

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P SM+AA  VL Q     +G ++ V+GD+ E+G+ S   H DL   L+   +  + + G 
Sbjct: 347 PTSMRAAAQVLLQ----QQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVVVGE 402

Query: 409 --------------FHVLALK-DALP---RSIHVHYSETMDGLF 434
                          H  A + +ALP   + I  H  ++M  LF
Sbjct: 403 YANAALQGSSHSEKLHAFATQAEALPFLIQLIQTHQPQSMSFLF 446


>gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 435

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 221/471 (46%), Gaps = 47/471 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ + ++G  IG    G VN I  DSR++     F  ++G + DGH FI  A Q GA  
Sbjct: 4   EEVAKIVKGKLIG---NGKVNSIEFDSRNVKKGSLFVPLRG-NRDGHQFIKDAFQNGASG 59

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +    +    G   I V    +   A   L    R     T IAITGSVGKTTTKE+LT
Sbjct: 60  TLSERTLPIPEGKFLIEV---KNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKELLT 116

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
              S   KTY  + S+NN +G+  TL+ +P+D +  I ELG +  GEI  L  +V+P I+
Sbjct: 117 HVFSKFFKTYRNVKSFNNILGLTYTLSNLPLDTELYIQELGTNRQGEIPELVEIVKPEIS 176

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T +  AH + F  I +I   K  I E     G I       F E  K+K      +TI
Sbjct: 177 VVTAVEKAHTAGFKDISDIVKEKLSITE-----GAILSIVPIQFKEFSKSK------ETI 225

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG+    D +L   +    ++   ++  G+ ++      G  +  + L+ +G+  +  
Sbjct: 226 -TFGRE--GDIKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAEVFK 282

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS-QISP 365
            +++   + +  F P E      R  + Q     LID+SYNANP SM+ AI VLS Q  P
Sbjct: 283 VNIEKVSELIRTFTPPE-----MRLTVEQLNKVILIDDSYNANPKSMENAIKVLSLQELP 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419
                ++A++G+M E+GE S+  H  + E+L+   +  +   G      F V   K +  
Sbjct: 338 -----KVAIIGEMLELGEESKKEHEKIGELLNHAKVETLIAYGKETESTFKVFKGKKS-- 390

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 Y  + + L  FI++    G  V+VK S      ++  ++ E + +
Sbjct: 391 ------YFTSQEELIKFIKTFHFQGKAVLVKGSRGNRLEKIARIIRERYKS 435


>gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
 gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
          Length = 453

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 218/448 (48%), Gaps = 25/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +   
Sbjct: 24  VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL+      +N D +  +  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320
                 S+  V   G   EV V  GI   M Q+ +      + L+ ++  ++  +   + 
Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H  + +G R   A  +   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E
Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S + H  + E  + +    V   G     + D         + + M  +   I+  
Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V++VK +NS G  ++   L E+F
Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
          Length = 450

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S S H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNL--LTKGRRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   I+ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 446


>gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC8]
          Length = 496

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 206/467 (44%), Gaps = 63/467 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQGK------------- 279
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 280 ----------------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                           S+ V    IG H   N L        L   ++   K L    P 
Sbjct: 297 TFTLNTNIDIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPP 356

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+
Sbjct: 357 KGRLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGD 408

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
            +   H  L   L+L  I HV   G H+     A+   +SI  HY++
Sbjct: 409 AADDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTD 455


>gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
 gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
          Length = 427

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 213/442 (48%), Gaps = 22/442 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R + P   F A+KG  +DGHDF   A+  GAG ++V+  ++     +  P   V 
Sbjct: 1   MTIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLL-----VEAPQLVVK 55

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN IGV
Sbjct: 56  DTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGV 115

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 116 PLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 175

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267
           K EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF     +   
Sbjct: 176 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHGAEDIDFFASDVRITP 232

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + ++  +     ++ +     G H   N L    +   + A +    + L+      GR 
Sbjct: 233 KTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVRQGLTQLQAVPGR- 291

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             +   L+ G   L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+GE +  
Sbjct: 292 -LFPIELSAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVD 345

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGD 445
            H  + +      +  V   G    AL +A     H     T+      L ++  ++   
Sbjct: 346 CHRQVGDAAKQAGVDKVLSVGVLSQALSEASECGEHFQDKNTLTARVSELLLEHPVI--- 402

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
            V++K S S     ++  L E+
Sbjct: 403 TVLIKGSRSAAMENVVRALQEK 424


>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 450

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 214/449 (47%), Gaps = 35/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           +  +  DSR I     F  + G   DGH+FI  A+  GA          AS  SL +   
Sbjct: 22  ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGAS---------ASFWSLPVEQA 71

Query: 84  ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
               PV  V D L A+ +LA     +  A ++AITGS GKTTTK++    LS   KTY  
Sbjct: 72  PKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKT 131

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ + +P  A IT I  AH+ N
Sbjct: 132 QGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQPKAAAITMIGEAHIEN 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               E IA AK EI +GL   G + +  D+     L A      ++T+ +FG   N D  
Sbjct: 192 LGSREGIAKAKMEITDGLVPDGLLVVPSDEPLLTPLTATL----VQTVTTFGIG-NGDVH 246

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                +   Q+  +  ++G++  +   G  Y++  N L+   I       +    + L+ 
Sbjct: 247 AEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALIAYTIGRFFGLSIPEIRQGLAH 302

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               + R   +  A N     ++ + YNANP +M   +     +    +GRRIAVL DM 
Sbjct: 303 VSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLDTFKNLP--TKGRRIAVLADML 357

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFL 435
           E+G+ S + H  ++E +     + ++L G  + ALK+ L    P+    ++ +  + L  
Sbjct: 358 ELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQKYPQLPVFYFEKEKNKLIE 417

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++ +L   D +++K SNS G + ++  L
Sbjct: 418 AVKQNLESTDSIMLKGSNSMGLFEVVEQL 446


>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 457

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 13/384 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++NG+SID+R+I   + +  I G  ++GH+FI  A+  GA   +   D    I ++  P 
Sbjct: 26  WINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGATATL--WDKNQPIPNIDFPF 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L A+  LA A R +    II ITGS GKT+TK++L   L ++ KT+  +G+ NN
Sbjct: 84  ILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDILFNILQTVYKTHKTLGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL  M  + +  + E+GMS LGEI  L+ +    +A+IT     H+++   +E 
Sbjct: 144 HLGVPLTLLEMAENTEIAVIEMGMSGLGEIELLSKIASSDVAIITNSTNVHINDLGSVEN 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWK 264
           I  AK EI EGL+  G +F+ + DS    L+     L +K    +FG +++ D+ ++   
Sbjct: 204 ILKAKLEIIEGLKPHG-LFIYFGDS--PPLRVGVEKLDLKQKKVTFGINRDNDYTVKLIS 260

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +E  + E+ +   S  +    +G H   N    + +       ++   + +       
Sbjct: 261 SENEGIYFEL-VGSDSPRLFLSMLGNHQIYNAAAAIAVAQYFNITLEKIQEGMLKIEATG 319

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +C      F ++++SY +NP S+++ +  +     + +  +I VLGDM   GE 
Sbjct: 320 MRNELIKC----NGFDILNDSYKSNPISLRSVLDTMYSFKKYKQ--KIVVLGDMFGTGEN 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408
             + HID+ E +    I +V+  G
Sbjct: 374 EITTHIDIGEEIDPSQIDYVFTIG 397


>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
 gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
          Length = 450

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 214/449 (47%), Gaps = 35/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           +  +  DSR I     F  + G   DGH+FI  A+  GA          AS  SL +   
Sbjct: 22  ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGAS---------ASFWSLPVEQA 71

Query: 84  ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
               PV  V D L A+ +LA     +  A ++AITGS GKTTTK++    LS   KTY  
Sbjct: 72  PKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKT 131

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ + +P  A IT I  AH+ N
Sbjct: 132 QGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQPKAAAITMIGEAHIEN 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               E IA AK EI +GL   G + +  D+     L A      ++T+ +FG   N D  
Sbjct: 192 LGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL----VQTVTTFGIG-NGDVH 246

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                +   Q+  +  ++G++  +   G  Y++  N L+   I       +    + L+ 
Sbjct: 247 AEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALIAYTIGRFFGLSIPEIRQGLAH 302

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               + R   +  A N     ++ + YNANP +M   +     +    +GRRIAVL DM 
Sbjct: 303 VSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLDTFKNLP--TKGRRIAVLADML 357

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFL 435
           E+G+ S + H  ++E +     + ++L G  + ALK+ L    P+    ++ +  + L  
Sbjct: 358 ELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQKYPQLPVFYFEKEKNKLIE 417

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++ +L   D +++K SNS G + ++  L
Sbjct: 418 AVKQNLESTDSIMLKGSNSMGLFEVVEQL 446


>gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 452

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF   A + GAG ++VN  +      + +P  
Sbjct: 24  IDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKL-----DIDLPQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  VVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + DF + ELG +H GEI +   L RP  A++  +A AHL  F  +E +
Sbjct: 139 IGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL   G   +N D++  + L  +S  +G +  + F   + ++DF       
Sbjct: 199 AKAKGEIYTGLPDNGIAIMNADNN--DWLNWQS-IIGSRKTWRFSPNAADSDFTATHIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +      +EV+    G H   N L    +   + A  D     L+      G
Sbjct: 256 TSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAAALSMAVGATHDAIKTGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A N+    L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G+ S
Sbjct: 316 RLFPVQLAENK---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMAELGDES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ HI + E      +  V  +G    A+  A    +  H+++    L   +++ + +  
Sbjct: 369 EACHIQVGEAAKAAGLDCVLSAGKLSQAISHA--SGVGEHFADKA-ALIERLKTLIAEKQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           +  V+VK S S     +++ L E
Sbjct: 426 IVTVLVKGSRSAAMEEVVHALQE 448


>gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
 gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
          Length = 453

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 212/442 (47%), Gaps = 19/442 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I  +  F A+ G  +D HDF   AV  GA  ++V  ++ A    L +      
Sbjct: 27  VSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVERELDADCSQLVVA----- 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN IGV
Sbjct: 82  DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R   + D+ + ELG +H+GEI + T LV+P +A++  +A AHL  F  I+ +  A
Sbjct: 142 PLTLLRSTAEDDYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGVKRA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KWKQC 266
           K EI++GL       +N +    +L K     L  KT+ +F  +  NADF  R  +    
Sbjct: 202 KGEIYQGLRAGAVAIVNLESHGGDLWKTD---LADKTVKTFSTTDHNADFYPRDVRLNAL 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S+  V   G+ ++V    IG H   N L    +   + A +      L+  H  + +
Sbjct: 259 GVASFTLVTPIGE-VDVELGIIGQHNVANALAAAALSLEMGASLAEIRHGLA--HLAKVK 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     L Q   TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+G+ S 
Sbjct: 316 GRVDLTHLRQD-ITLIDDSYNASVPAMKAAVDLLGGFSA----VRWLILGNMAELGDESL 370

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + E  + ++   V   G     + D         + + M  +   I+       V
Sbjct: 371 ALHQQVGEHAAPFSFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGRAQV 430

Query: 447 VVVKSSNSCGFYRLINLLLEEF 468
           ++VK +NS G  ++   L E+F
Sbjct: 431 LLVKGANSAGMSKIAAALKEKF 452


>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
 gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
          Length = 450

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   I+ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 446


>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
           ATCC 367]
 gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis ATCC 367]
          Length = 461

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 208/440 (47%), Gaps = 36/440 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR + P   F  + G H DGH FI  A+  GA   +   D+ ++      PV 
Sbjct: 26  VTSVAFDSRHLQPGGLFIPLTGEH-DGHQFIQSAIDHGAVATLWARDLASAPADF--PVI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD L AL  LA     +    ++A+TGS GKTTTK+M+   LS+   + KT+A   ++
Sbjct: 83  QVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTKDMIAAVLSTQFNVTKTHA---NF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+T+  M  + +  + E+GM   G++ FL+ LV P +A+IT I  AH+  F   
Sbjct: 140 NNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLSQLVSPDLALITMIGEAHIEFFGTR 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----- 258
           ++IA AK EI  GL   G    N D+    LL+ ++  L  + + +FG+    D      
Sbjct: 200 DKIADAKMEITHGLSDDGVFVFNGDEP---LLRERATELTQRQV-TFGQQGTDDLFATDV 255

Query: 259 -QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                    +   W EV             IG +   N L  L +  +     ++A +AL
Sbjct: 256 TGTPTTTSFTTNQWPEVTFTIPM-------IGTYNVNNALAALSVAMLYRIRPESAKQAL 308

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           +     E R +    A       ++ + YN+NP + K  ++  SQ      G+R  VLGD
Sbjct: 309 ATVSLTENRAEWVTSASGAA---ILSDVYNSNPTAAKEVLTAFSQTPV--TGQRYVVLGD 363

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMD--G 432
           M E+G+ + + H  LA  +    I HV+L G H+    A        + V + ET D   
Sbjct: 364 MLELGDQADAMHASLASAIDATKIDHVYLVGPHMLALQAALAQQQPQLAVSHYETTDLAT 423

Query: 433 LFLFIQSSLVDGDVVVVKSS 452
           L + +Q+ L   D +++K S
Sbjct: 424 LTVDLQNQLTADDQILLKGS 443


>gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 461

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 210/450 (46%), Gaps = 23/450 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R   P   FFA+KG  +DGH+++  AV +G   VVV+         + +P  
Sbjct: 25  IESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVAQGCTAVVVDHPC-----EIDVPQL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R   +   +AITGS GKTT KEM    L         +    G+
Sbjct: 80  VVKDTRLALGRLAAWLRRELEPLTVAITGSCGKTTVKEMTAAILQRTAGDDEAVLFTEGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+    ++ + ELG +H GEI +  HL  P +A++  ++ AHL  F  
Sbjct: 140 FNNDIGVPLTLLRLTEKHEYAVIELGANHAGEIAYTAHLTMPDVALVNNVSAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR 261
           +E +A AK EI+ GL   G   LN D ++          +  +   SF      AD+   
Sbjct: 200 VEGVAQAKGEIYSGLTPDGVAILNLDSNYAHYWGGD---INDREFESFAYDHVGADYYAE 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K       S   +     ++++    +G H   N +    +   + A ++   + L   +
Sbjct: 257 KIMLSEYGSRFTLNTPKGAIKIELPYLGKHNVANAVAASALAMNVGASLEDIKRGLE--N 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   +G+ +   L+     L+D++YNAN AS+K+AISVLS    + E  RI   GDM E+
Sbjct: 315 PSHVKGRLFPIQLSTNLL-LLDDTYNANVASVKSAISVLSD---YREAFRIFAFGDMAEL 370

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGLFLFIQSS 440
           G+ + S H ++A+     N+  V   G     +  A    +H    E +   L   I   
Sbjct: 371 GDETISCHQEVADFAKAANLDLVVTYGSESAVVSKACG-GVHFSNKEALIASLKEIISHQ 429

Query: 441 LVDGD--VVVVKSSNSCGFYRLINLLLEEF 468
           L + +  V++ K S S     +IN L + F
Sbjct: 430 LKENEDIVLLAKGSRSMKMEDVINSLKDRF 459


>gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37]
          Length = 447

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 212/433 (48%), Gaps = 39/433 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89
           +D R   P   F A  G H DGHD+   A + GA         VA +GS   ++P   V+
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGA---------VAVLGSRPTTLPTVVVE 81

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LA  V ARLR + T++ +TGS GKT+TK++L   LS    T A IGS NN +
Sbjct: 82  DARAALQALAAHVVARLRDRLTVVGLTGSQGKTSTKDLLAAVLSHTGSTVATIGSLNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R   D  F + E+G   +G I  LT LV   +AV+  +  AH+  F   E IA
Sbjct: 142 GVPLTMLRTTPDTRFLVLEMGARGIGHIAELTALVALDVAVVLNVGQAHIGEFGSREAIA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRK 262
           +AKAE+ +GL   GT  LN DD    +++A +    +    +FG++++A     D  L +
Sbjct: 202 TAKAELLQGLVPGGTAILNADDPRVLVMRALTDGPAL----TFGRAEHAHVRVLDLALDR 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             + +      ++    S  V    +G H A N              +D     L+    
Sbjct: 258 LGRPA----FTLRTADASAPVALPLVGAHQALNASAAAAAGLAAGIPLDVTAATLATASL 313

Query: 323 KEGRGKRYRCALN--QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                 ++R  L    G  +L+++SYNANP S +AA+  L+ I     GRRIAVLG+M E
Sbjct: 314 -----SKWRMELRGLSGGVSLLNDSYNANPDSTRAALDALAAIE---AGRRIAVLGEMRE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S++ H  + E  +      V +        + A  R++ +  +   D    +++ +
Sbjct: 366 LGDDSEAEHRAIGEYAARAADLVVAVGEAAAPIAEGAGDRAVALADN---DAAVDWLRRA 422

Query: 441 LVDGDVVVVKSSN 453
           L  GDVV+VK+S 
Sbjct: 423 LTAGDVVLVKASR 435


>gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
 gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
          Length = 433

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 222/451 (49%), Gaps = 24/451 (5%)

Query: 18  SIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           SIG + Q ++N   +  D+R+I P   FFA+KG  +D + F   A++ GA   +++ +  
Sbjct: 3   SIGSLYQHYLNHSTVCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEAY 62

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            +     +    V DVL AL  LA   R +    ++ +TGS GKTTTKE++   LS   K
Sbjct: 63  QTNERCLL----VSDVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYK 118

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           T+A  G+ NNHIGVPL++  +  +++  + E+G +H  EI FL  + +P   +IT I  A
Sbjct: 119 TFATRGNLNNHIGVPLSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLITNIGMA 178

Query: 196 HLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F G E +   KAE+F  L++ +G  F+N ++ +  LL+    A   K +Y   +S 
Sbjct: 179 HLDGFGGFEGVKKGKAELFAYLKQHSGFAFINRNNPY--LLEMSEKAQLSKVVYYGTESS 236

Query: 255 NA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           N    +L K     E SW   Q +     +  +  G +  +N+L  + I           
Sbjct: 237 NTVAGKLLKTDPFIELSW---QSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVEI 293

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              LS + P   R +  + A N    T+I + YNANP+SM AA   L+ I       +  
Sbjct: 294 NAGLSGYFPNNNRSQLTKTASN----TVICDFYNANPSSMAAA---LTNIELLKGSNKTV 346

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           ++GDM E+GE S   H+++ E     +I+ +   G H    K    ++   H+  T    
Sbjct: 347 IIGDMFELGEESAKQHLNIIEQAEKLDIATLIFIGKHFYHAK----QNHKGHFFATPAEA 402

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             F++++ +   ++++K S      +L+ LL
Sbjct: 403 AAFLKTNPLKNALILLKGSRGMALEQLMPLL 433


>gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 460

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 207/413 (50%), Gaps = 12/413 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  IS +SR+      F AIKG ++DGH F   +V+ G+ L +++  ++    S+  P  
Sbjct: 30  IQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGS-LAILSEKIL----SIDHPQI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ + A+ +LA   R +S A  IAITGS GKT+ KEM    LS +  T +   + NN 
Sbjct: 85  IVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILSQVGSTISTKKNNNNS 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GV LTL R+     + + E+G S LGEI+F + +V P + +I  +  +HL  F     +
Sbjct: 145 LGVLLTLLRVNEFHQYVVIEIGASQLGEIKFSSKIVNPDVVLINNLFASHLKGFGSFSNL 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           + AK+EIF GL K  T  +N D+   +  K K   L     +S  K K + F      + 
Sbjct: 205 SRAKSEIFFGLSKFNTAVINLDNHDIKHWKHKIRNLSKVWFFSLKKKKKSHFYSNTISEK 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     ++        V  H  G H   N + +  +   + A +D   K L  FHP +GR
Sbjct: 265 NFFMKFDIHTPFGIARVSSHLAGLHNISNSIASAALSISVGAKIDQIEKGLKNFHPIDGR 324

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                 +  +    ++D++YN+N  SMK+AI VLS++     G R+ V+GDM E+G+ S 
Sbjct: 325 MYPVYISSEK---IILDDTYNSNFGSMKSAIDVLSKM----PGYRVLVVGDMLELGQYSS 377

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            +H  ++ ++   N++ +   G + L +  +    +H H  + +    +++ S
Sbjct: 378 FYHKKISRIIQNKNLNTIISFGKYSLFISQSFQNGMHFHSKKKLTKKLIYLIS 430


>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
 gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
          Length = 470

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 24  TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 79

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 80  S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 130

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 131 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 250

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 251 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 302 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 358

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 359 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 416

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   ++ +L   D +++K SNS G + ++  L
Sbjct: 417 NQKYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQL 466


>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
           [Bacillus cereus E33L]
 gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus E33L]
          Length = 454

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 208/399 (52%), Gaps = 48/399 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS+++     F  I     DGH+++  A+  GA    +++    S G+    IP
Sbjct: 27  IHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDNGA----ISSLWKKSYGTPPKGIP 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 82  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +AVIT I  +HL      +
Sbjct: 142 SQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRK 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----Q 259
           EIA AK EI +GL + G    N D+  F     K+  +  KT   FG+    D      Q
Sbjct: 202 EIAKAKLEIIDGLRENGLFLYNGDEPLFS-RNNKTSGVNCKT---FGEKDTNDLFPTNVQ 257

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILTAD 309
           L ++              G   ++ H  I Y    H   N+  T+ GI       + T  
Sbjct: 258 LDEY--------------GVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVPTEK 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  A++ +++         R++    +  FT+I++++NA+P+SMKAAI  L +++ +   
Sbjct: 304 IQEALQQINITQ------MRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAY--K 355

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           ++I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G
Sbjct: 356 KKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYG 394


>gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
 gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
          Length = 460

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 196/387 (50%), Gaps = 47/387 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I  +  F A+KG  +D HDF   A   GA  ++V+  +      + +P  
Sbjct: 24  IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKPL-----PVELPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKAT------IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V D   AL  +   A L+++ T       +A+TGS GKTT KEM    L++  +  A  
Sbjct: 79  VVSDTRIALGMMG--AWLKAQMTEKYGLKTLALTGSCGKTTVKEMSAAILANKGQVLATA 136

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV+P++A+I  IA AHL  F
Sbjct: 137 GNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEIFYTTNLVKPNVALINNIAAAHLEGF 196

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             ++ +A AK EIFEGL + GT  +N+   D + ++ L A+   L   T      S  AD
Sbjct: 197 GSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQPLLAEHQVLTFST-----DSHQAD 251

Query: 258 FQLRKWK----------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +   K K           C+    +++ L    M  V + +    A  + ++LG      
Sbjct: 252 YFAEKIKITTQGLACFTMCTPIGKIDINLALAGMHNVSNALA---AAALTVSLGAT---L 305

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           ADV   ++ ++    +    + Y          LID++YNA+ A++KAAI VL+      
Sbjct: 306 ADVKAGLETMANVKGRLDITEPY------ARLRLIDDTYNASVAAVKAAIDVLASF---- 355

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAE 394
           EG+R  + GDM E+GE S + H ++ E
Sbjct: 356 EGKRYFIFGDMAELGEESDNLHREVGE 382


>gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 434

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 228/442 (51%), Gaps = 32/442 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88
           I+IDSR   P+  FFA+KG + DG+ F   A+Q GA   V++  D+ A    + +P    
Sbjct: 17  ITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDPDVAADDRYIVVP---- 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL A+ +LA   R + KA IIA+TG+ GKTTTKE++   L+   K      ++NNHIG
Sbjct: 73  -DVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTERNHNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  +  FG+ E+G +H GEI  L  + +P   +IT    AHL  F   E +  
Sbjct: 132 VPLTLLRLTEEDQFGVIEMGANHKGEIASLCDIAQPDFGIITNFGRAHLEGFGSFEGVIE 191

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ--LRKWK 264
           AK E+F+ L E  G +F+N  +S   + KAK    GI  I S+G  +  AD    +    
Sbjct: 192 AKTELFDYLREHKGRVFINIGNSNI-VEKAK----GIGNI-SYGINNDKADVSGYITGQN 245

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            C   SW   +    +  V  H +G +  +N+L  + +      + +   +AL  + P+ 
Sbjct: 246 PCISVSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEVEPNDINEALCGYIPEN 305

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N     LI ++YNANP+SM AA+   + +  PH    ++ +LGDM EMG+
Sbjct: 306 HRSQYMKTDRND----LIIDAYNANPSSMAAALRNFNSLPYPH----KMVILGDMLEMGD 357

Query: 384 LSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            +   H ++  ++ +  +I  V L G  + A  D+  ++       T+D L  +++++  
Sbjct: 358 TAVEDHEEIVNIIRNQLSIDEVLLVG-EIFASIDSGYKTF-----VTVDDLSAYLEANPP 411

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
               V++K SN  G  R+I  L
Sbjct: 412 KDTAVLLKGSNGIGLERIIAYL 433


>gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
 gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
          Length = 444

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 205/416 (49%), Gaps = 53/416 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           ++ A     I  +  G++ G        +S D+R++   + F A++G H+ G DF+  A 
Sbjct: 1   MIAAWTAKEIATIVGGYLRGNDDWRALEVSTDTRTLTAGQLFIALRGEHFCGEDFLQTAQ 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++GA  V+V          + IP   V+D L AL  LA A R +S A II +TG+ GKT+
Sbjct: 61  ERGAVAVIVQ-----EYREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKTS 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   LS+  KT A +G+ NN IGVPLTL R+  +  F + E+G +H  +I  L  +
Sbjct: 116 TKEMLYRILSAQGKTLATVGNLNNDIGVPLTLLRLQNEHRFAVIEMGANHPRDIERLVKI 175

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +AVIT ++ AHL  F  ++ +A+AK+EI+     +G + +N D        A    
Sbjct: 176 VCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRF--SSGALVVNAD---LPQAAAWLQE 230

Query: 242 LGIKTIYSFGKSKNAD------------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            G ++I +F   ++A             F L    Q +E +W   QL G+      H + 
Sbjct: 231 FGHRSIQTFALEQSAQWTAADISDNGQRFTLMHLAQRAEIAW---QLCGR------HNVA 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             +A     +   VS+       + +AL     ++ R      AL+    TL D++YNAN
Sbjct: 282 NALAATAAASFAGVSLA-----QSAQALQGLRLQQSR----LVALHVRHHTLYDDTYNAN 332

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           PAS KAAI V+ + + H     + + G M E+G  S + H ++A       I H W
Sbjct: 333 PASFKAAIEVI-KTAAHS----LVIAGKMGELGAQSAALHAEVAAFAREKGIKHFW 383


>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
 gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 182/384 (47%), Gaps = 18/384 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR++     F A++G  +D HDF+    ++    +V  T        L++P   
Sbjct: 24  DGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIVAET----VPDGLTVPALI 79

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYN 144
           V D   AL ++A   R + K  +I +TGS GKTT KEM+   L +   +    A  G++N
Sbjct: 80  VQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMIAAILEAACGVDNYLATRGNFN 139

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVPLTL R+       + ELGM+H GEI  L+ +  P + ++      H    + +E
Sbjct: 140 NDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIAEPTVGLVNNAQREHQEFMASVE 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A     +  GL   G      DD F  L +        + + +FG S +AD +   + 
Sbjct: 200 AVAQENGAVLAGLPADGIAVFPADDEFTPLWR---QLAAQRKVLTFGFSDDADVRC-SYS 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +  S ME+    +   V     G H  +N L  +     +    D   + L  F P  
Sbjct: 256 ANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIACALAIGIATDAIARGLQAFAPVS 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +R + A N     +ID++YNANP S++AAI VL+Q+S      RI VLG+M E+G  
Sbjct: 316 GRLQR-KLAANGAL--VIDDTYNANPDSVRAAIDVLAQMSAP----RILVLGEMGEVGND 368

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408
            + +H ++       +I +V   G
Sbjct: 369 GRQYHEEIGAYARAKSIEYVLTLG 392


>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
 gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
          Length = 450

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   ++ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQL 446


>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfotomaculum reducens MI-1]
 gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfotomaculum reducens MI-1]
          Length = 457

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 226/461 (49%), Gaps = 35/461 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++ Q I G  +   P   + GI  DSR   P+E F A++G   DGHDF   A+++G
Sbjct: 4   YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V+ ++     +  IPV  V + L AL +LA   R R    ++A+TGS GKT+TK+
Sbjct: 64  ASALLVSREITGI--APQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KT    G++NN +G+PLTL  +  +    + E+GM   GEI FL  L +P
Sbjct: 122 MIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDFLAGLAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243
             AVIT I  AHL     +E IA AK E+   + + G   LN D  +  EL +     + 
Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGELARNCQGKVW 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302
           + ++   G     D Q    +         +   G   E+     G H   N L  +G+ 
Sbjct: 242 LYSLEGIG-----DLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVG 296

Query: 303 --VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +   ++   +  L + H       R +   + G   +I+++YNANP+S KAA+ VL
Sbjct: 297 LQLGLQLEEIAQGLAQLCLTH------SRLQILSSNGRV-IINDTYNANPSSTKAALKVL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHV 411
            + +     R+IAVLG+M E+G+L QS H ++ E         ++S+ N++  W++    
Sbjct: 350 KETA---RSRKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGNLAQ-WITQG-- 403

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             LK  L +       E  + + + +   L  GD ++VK S
Sbjct: 404 -GLKGGLSQERVFQCQENSEAVEV-LGKILKPGDTILVKGS 442


>gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 455

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 214/448 (47%), Gaps = 27/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           +  ++ DSR I+    F  IKG   DGHDF+  A++ GA   +         G+ + P  
Sbjct: 24  ITSVAFDSRKISQGALFVPIKG-ERDGHDFVGSAIEAGASATLWEA------GNPNKPEG 76

Query: 85  --VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  V D L A+  LA     +   T+++ITGS GKTTTK+M+   L+     Y    +
Sbjct: 77  IAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAKRFNVYKTQAN 136

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +AVIT I  AH+  F  
Sbjct: 137 FNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLVRPDVAVITMIGEAHIEFFGS 196

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            ++IA AK EI + L++ G    N D    E L A+  A   +   +FG + +       
Sbjct: 197 RDKIADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLPQDKSTFGFADSDSIHASD 252

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFH 321
            +     S+ ++   G   E     IG H   N +  + +V     + D  I A L+ F 
Sbjct: 253 LRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFV 309

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +  +    +   + I   YN+NP ++KA  +   Q+    +GRRIAVL DM E+
Sbjct: 310 PTANRMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLEL 366

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLF 436
           G  S   H  LA  L    I+ ++L G  +  L  AL      +++H +  + M  L   
Sbjct: 367 GSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEMSHLIDD 426

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++S +   D+V++K S+     R+++ L
Sbjct: 427 LKSDIHSQDIVLLKGSHGMHLERVLDRL 454


>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
 gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
          Length = 472

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 204/447 (45%), Gaps = 24/447 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87
           ISIDSR++   + F AI+G  +DGHDFI   + +GAG V+++    + I +      G  
Sbjct: 24  ISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGGVMIDQAHASRINTPRATGRGAR 83

Query: 88  --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D + AL  LA   R      + AITG+ GKT+TKEM  +      +  A  G++NN
Sbjct: 84  VVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTKEMAAMVCGRRYRVLATTGNFNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLTL R+       I E+GM+  GEI  L  +  P + V+  +   HL     I+ 
Sbjct: 144 EIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICEPDMGVVLNVGAGHLEGVENIDG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A AKAE+ E L    T  +N DD    ++K      G   + ++G  + AD      ++
Sbjct: 204 VARAKAELLEALTDKDTAIVNADD--MRVMKMAQKVRG--RVVTYGMRQKADITAASVRR 259

Query: 266 CSEQSWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              +   ++ L    + + V     G  M  N L    I + L          L  F P 
Sbjct: 260 QDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAAIGAGLGLSAPEIKAGLENFSPV 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R      +  FTL+D++YNANP SMKAA++ L ++   G GR I ++GDM E+G+
Sbjct: 320 PG---RMTITQTRAGFTLVDDTYNANPESMKAALAGLREL--KGAGRGILIMGDMFELGD 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            +   H     + +   +  ++++G          A     P  I +   ET   +   +
Sbjct: 375 HAPVMHGKTGVMAAESGVDRLYVTGEFAEAVAGGAAAAGMTPEKIMIESKET---IIEAV 431

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
              L  GD V+VK S       ++  L
Sbjct: 432 CPVLEPGDWVLVKGSRGMRMETVVQAL 458


>gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli WV_060327]
 gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli RN587/1]
          Length = 452

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   +N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S
Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ H+ + E      I  V   G    A+  A    +  H+S+    L   ++S + +  
Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           V  ++VK S S     ++  L E
Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448


>gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
 gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
          Length = 455

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D  
Sbjct: 13  GCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK405]
          Length = 456

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SEHPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKEGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++   A +A S       R + ++ 
Sbjct: 257 ECNFLDQRIDLPVTG-KYNATNAMIAAYAALQEGVSEAAIA-QAFSKLELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AANGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREELT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
 gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
          Length = 457

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 214/438 (48%), Gaps = 22/438 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I IDSR       F  + G   D H F+      G  + + +   + S    +I +  V
Sbjct: 28  NIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGCRVAISSRKDIFSKPDFNIVL--V 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D + AL  L +  R +    ++ +TGSVGKTTT+EM  +ALS +K  +    ++N+ +G
Sbjct: 86  EDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREMTALALSDLK-VFKTPNNFNSQLG 144

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP+T++R+  D + GI ELGMS  GE+  +  +V    A+IT I  AH+ N    E I S
Sbjct: 145 VPVTISRI-TDEEIGIIELGMSLFGEMERIAKIVGCDSAIITNIGTAHIENLHTKENIRS 203

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS 267
            K  I +G++    +FLN D+   ++L       GI  IY F  +K N D          
Sbjct: 204 EKFHIMDGMKAGSVVFLNADN---DMLSNPPKREGI--IYKFFSAKGNTDCDYYATDIVF 258

Query: 268 EQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +  E    +  +S++V  +  G H   N L+ L +      D+++A K LS F     
Sbjct: 259 HNAMPEFTAHICDRSIKVTLNVFGEHQVSNALVALAVAHHYNLDIESASKHLSSF----- 313

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           RG  +R  L +    T+ID++YNA+P SMKA++S+L         R+IAVL DM E+G  
Sbjct: 314 RGFSHRQELIELKNLTVIDDTYNASPDSMKASLSILKDFRAR---RKIAVLADMKELGAD 370

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              FH ++ E +S  N+    +     LA +      I     ++ + L  ++   L DG
Sbjct: 371 EVKFHREVGEFIS-ENVKPDAVFSVGELAREIVNCTDIFGKSFDSNEALEKYLLEYLEDG 429

Query: 445 DVVVVKSSNSCGFYRLIN 462
           DV + K SNS   + +++
Sbjct: 430 DVCLFKGSNSMRLFDVVD 447


>gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 465

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 183/388 (47%), Gaps = 23/388 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     +  I G   +GH ++  A+  GA  V+   +         + V 
Sbjct: 27  IQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANGAKAVL--WERKEPNPPKEVVVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL  LA A R +    ++ ITGS GKT+TK++L   L     T   +G+YNN 
Sbjct: 85  LVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKDILASLLQEHYITQKTLGNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +  +V+  + E+GM +LGE+ FLTH+V P IA+I+ +  AHL N   +E I
Sbjct: 145 IGVPLTLLSLSENVEAAVIEMGMENLGELSFLTHMVEPDIAIISNVGTAHLENLKTMENI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI EGL++ G    N D    +    ++   G   I +FG     D+ +    Q 
Sbjct: 205 AKAKLEIVEGLKEHGLFIYNGDQEILQNAVTQAQIPGHIRIRTFGVKPQNDYVISHITQK 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   +   L           IG H A N          L          LSV   +EG 
Sbjct: 265 RE--GVSFCLNDDVCPYHVDMIGKHQAMNATAAWIAAKAL---------GLSVEEIREGY 313

Query: 327 GKRYRCALNQ-----GFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCE 380
               +  L       G   ++++SY +NP S  AA+  + +   P+    +IAVLGDM E
Sbjct: 314 QNIEKTGLRNELVDFGNCLILNDSYKSNPQSALAALDTMEEFDVPY----KIAVLGDMLE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ S   H  L + L+ Y+++ V   G
Sbjct: 370 LGDTSDMIHYTLGKDLAKYHLNEVLTIG 397


>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
 gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
          Length = 461

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 195/405 (48%), Gaps = 24/405 (5%)

Query: 6   TFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL+A+ G  +G     +  V+G+  DSR I P   F  + G  +DGH +I  A++ 
Sbjct: 5   TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEA 64

Query: 64  GAGLVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA   +   V TD       +      V +   AL  LA   + R +   + ITGSVGKT
Sbjct: 65  GAAGCLTARVRTDYREDKFYIQ-----VGNTERALRDLAAWYKDRFQIPFVGITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K+M+   LS   K     G++NN+IG+PLTL R+      G+ E+GM   GEI +L+ 
Sbjct: 120 TAKDMIAAVLSVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEIDYLSD 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKS 239
           +VRP + VIT I  AH+      E I  AK E+   + K  G + LN DD     L+ K+
Sbjct: 180 IVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKT 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNML 297
               ++ ++  GK+++AD++  +       S +   +    ME  V    +G HM    L
Sbjct: 240 P---VQAVFC-GKAEDADYRA-QVTGGDGVSHIHCHITTPKMERDVKIPALGEHMIYPTL 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   +        D     ++ F P      R      +G  T++D+SYNANP SM+AAI
Sbjct: 295 IAAAVGEHFGLTPDEIEDGIARFVPTR---MRMNVIQREGEITILDDSYNANPQSMRAAI 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           SVL+         ++A+LGDM E+G  + + H  + + L    I 
Sbjct: 352 SVLADTH---SSWKVAILGDMFELGPYAPALHAGVGDYLGKRGID 393


>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 461

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 188/374 (50%), Gaps = 21/374 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPV 85
           V  IS D+R +     FFA+KG ++D H ++  AV +GA  +VV       I S L +P 
Sbjct: 25  VENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVAQGAVALVVQ-----KINSHLDVPQ 79

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----G 141
             V+D   AL +LA   R      ++A+TGS GKTT KEM    L         +    G
Sbjct: 80  LVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKTTVKEMTASILQKSAVNSDTVLFTEG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN IGVPLTL R+  +  F + ELG +H GEI + T L +P +A++  +A AHL  F 
Sbjct: 140 NFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIAYTTSLAKPDVALVNNVAAAHLEGFG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
            IE +A AK EI+ GL  +G   +N + ++   +K  +  +G + I  F  +   ADF  
Sbjct: 200 SIEGVAQAKGEIYRGLPASGVAIINKEHNYS--IKW-AQEIGERAIQYFAYQDATADFYA 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +     S  E+      + +    +G H  +N L    +   + A +    K L + 
Sbjct: 257 DNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNALAATALAMNVGASLTQVKKGLEMR 316

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +   N     L+D++YNAN  S+++AISVL + S      RI ++GDM E
Sbjct: 317 SQVKGRLFPIQPCEN---LLLLDDTYNANVDSLQSAISVLQKYSAF----RILIVGDMAE 369

Query: 381 MGELSQSFHIDLAE 394
           +GE SQ  H  +A+
Sbjct: 370 LGENSQLCHQQVAD 383


>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
 gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
          Length = 452

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 209/435 (48%), Gaps = 21/435 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +G V+ +S D+R++ P   F A++G  +DGHD+I  A++ GA   V +       G    
Sbjct: 17  EGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGGAACAVAHERRDYGAG---- 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V +   AL  LA A R R     + ITGSVGKTTTK+M+  A+S+  +T    G+ 
Sbjct: 73  PVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKDMIAAAVSAGFQTLKTEGNL 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P TL  +    +  + E+GM   GEI  L  + RP + VIT I  +H+      
Sbjct: 133 NNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADVARPTLGVITNIGVSHIEQLGSR 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I  AK E+ + L     +FL  DD   +LLK  S        Y   ++          
Sbjct: 193 ENIMKAKLELADALPDGAPLFLCGDD---DLLKKVSIPRLDVRFYGV-ENPACALHAADI 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   Q+   +Q  G  +      IG H  +N +   G+   L    +    AL+ + P 
Sbjct: 249 READAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVGMALGIPAEKCAAALAAYVPS 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R R  ++ G  T++++ YNA+P SM+AA++ LS +     GRRIAVLG M E+G 
Sbjct: 309 ---GMRQR-VVHWGSVTVVEDCYNASPDSMRAALTTLSAM--RCAGRRIAVLGGMLELGA 362

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            SQ+ H ++    +   +  +   G    ++    K+    S    +S+  D L   ++ 
Sbjct: 363 YSQAAHREVGRAAAGAGVDLLLAYGGDACYYSQGAKEGGVES--ETFSDKAD-LLARLRG 419

Query: 440 SLVDGDVVVVKSSNS 454
           +L  GD+V VK S  
Sbjct: 420 ALGPGDIVWVKGSRG 434


>gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
 gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
          Length = 452

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 188/383 (49%), Gaps = 16/383 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ++ D+R +     F A+ G  +D HDF   A+  GA  ++V+  +      +++P  
Sbjct: 24  LNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGAQALLVSKHL-----PVAVPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  +L    R +S A ++A+TGS GKT+ KEM    L    +T    G+ NN 
Sbjct: 79  VVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGETLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVP+TL R+  +  + + ELG +H GEI + T LV+P  A++  +A AHL  F  +  +
Sbjct: 139 YGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF+GL   G   LN  D   + L  + + L  KT++ F  ++   DF  R  + 
Sbjct: 199 AKAKGEIFQGLPAHGIAILN--DESNDWLNWQ-NTLQDKTVWRFSPQAGECDFSARDIRI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +   +     + E+V    G H   N L    +   + A +    + L       G
Sbjct: 256 AQDGTHFVMNTPRGTAEIVLPLPGRHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R + +Q    L+D+SYNAN  SM AA+ VLS++     G ++ V GDM E+GE +
Sbjct: 316 RLFPVRLSAHQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYQVLVAGDMAELGEET 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
           +  H ++ E      +  V   G
Sbjct: 369 EKCHREIGEAAREAGLDRVLTCG 391


>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
 gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
          Length = 450

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    ++ +  + L   ++ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQL 446


>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 318

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 157/269 (58%), Gaps = 13/269 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121
           A   +V+     S      P+  V D L AL+ +A +  +R+    A +IA+TGSVGKTT
Sbjct: 64  AIAAIVSEGKYKSF-----PLIIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ +
Sbjct: 118 TKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L   SHA
Sbjct: 178 SNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL--SSHA 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
              + + SFGK KNA+  L    +  E S
Sbjct: 236 --NRNVISFGKDKNAEVCLLNLIRNDESS 262


>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 455

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 231/464 (49%), Gaps = 28/464 (6%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L   I+G+S  ++     + ++ DSR I     F  +KG   DGHDFI  A+  GA  V 
Sbjct: 12  LDTTIEGNSDPVI-----SSVAFDSRKINENALFVPLKG-ERDGHDFINSAIANGA--VA 63

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              +        + PV  VDD L A+ +LA     +    ++ ITGS GKTTTK+M+   
Sbjct: 64  TLWEKGHPNKPDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAV 123

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV+P + VI
Sbjct: 124 LSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDVCVI 183

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIY 248
           T I  AH+  F   ++IA AK EI + L++ G    N D+    LL+ ++  +   K+ +
Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEP---LLRQRAEKISQAKSTF 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            F   ++  + L         S++    + K S+ +    IG H   N +  + +     
Sbjct: 241 GFN-DQDTIYALEFKSYMHHASFVTSSSEQKFSIPM----IGKHNVSNAMAAICVGHHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PH 366
              D    +LS F P   R +  +  + +    ++D+ YN+NP + KA ++   Q+  P 
Sbjct: 296 ETDDEIAASLSNFTPTANRMQWRKGDVGE---DIMDDIYNSNPTAAKAVLTSFGQVEVPE 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
           G GRRIAVLGDM E+G  S + H  LAE L    I+ V+L G  +  L++A+     P S
Sbjct: 353 G-GRRIAVLGDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAPAS 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K+S+     +++  LL
Sbjct: 412 LHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455


>gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
 gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
          Length = 463

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 29/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   DGH+FI  A Q GA       ++         P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++IA  
Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G+   G +    D      L         + +  FG  +  D    +  + S  
Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I AL       G    
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G+ S   H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440
             L + L+  NI  +   G H+  L     +   +  VHY       +  + +  ++Q+ 
Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   D +++K S+S    +L++ L+ +
Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455


>gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 464

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 147/462 (31%), Positives = 228/462 (49%), Gaps = 49/462 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR++ P + F A++G  +DG  F   A+Q+GA  VV++      +         VD
Sbjct: 31  VTTDSRTLRPGDLFVALRGERFDGGAFAAQALQQGAAGVVLDRAQAPDLAQ----ALRVD 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNN 145
           D   AL +LA A R R    ++AITGS GKTT KEML   L       A +    G+ NN
Sbjct: 87  DTRLALGRLAQAWRQRFAIPLVAITGSNGKTTVKEMLAAILRVEAGDAAAVLHTEGNLNN 146

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPL L R+     + + E+GM+H GEI +LT L RP IA++     AH+     +E 
Sbjct: 147 DIGVPLMLLRLRDHHQYAVLEMGMNHAGEIDYLTRLARPDIAIVNNALTAHIGFLGSVEN 206

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLR 261
           IA AK EIF GL   G    N DD    L +  +     + +  FG     S   D++  
Sbjct: 207 IARAKGEIFNGLTDAGIAVFNADDPHAGLWREANRQ---RCVVDFGLVHATSVRGDYRAD 263

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           ++      S + V L   ++++     G H   N L  +     L     + +  L+ F 
Sbjct: 264 EFG-----SALTVTLPNATLDIALQVPGEHNVMNALAAVAGAFALDVSHRSVVAGLAGFG 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR +R + AL+    T+ID++YNANP S+KAA++VL+Q  P   G++I VLGDM E+
Sbjct: 319 GVKGRLQR-KAALHGS--TVIDDTYNANPDSVKAALAVLAQ-QP---GKKIFVLGDMGEL 371

Query: 382 GELSQSFHIDL---------AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           G+ + S H ++           +L+L ++S   ++ F   A+          H+ E ++ 
Sbjct: 372 GDDAASMHEEIGVAARAAGVGRLLALGDLSCATVAAFGTGAM----------HF-ERIEE 420

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE--EFPAIQ 472
           L   +++ L  G VV+VK S      R++    E  + P +Q
Sbjct: 421 LLAELENELAPGTVVLVKGSRFMQMERVVKSFTEASDAPGMQ 462


>gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 465

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 223/458 (48%), Gaps = 41/458 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR ++    F  + G H++GH F+  A++  A   VV       +    +P +
Sbjct: 29  VGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEAQAAVVARKDHHPVPE-GLPHW 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A  +L +  R +    ++A+TGS GKTTT+E++  AL+ + +  A  G+ NN 
Sbjct: 88  IVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLASAGNNNND 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTL +   D    + E+GM  +GEI  L+   +P +AVIT I  AH+        I
Sbjct: 148 VGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSRAAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIKTIYSFGKSKNADFQLR 261
           ASAK EI   L+  G I +   DS  E     + + +   + ++        + AD   R
Sbjct: 208 ASAKCEITTCLKPRGVIVIPAGDSLLEDALERIWRGRVIRVAVQDNQQLEPPEIADLHRR 267

Query: 262 KWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +     C + +  E+ L+GK+  +   G+  H A N+++ L +   L    + ++  
Sbjct: 268 PLPKADLVGCVDLAKGELLLEGKAYTLPLEGM--HNACNLMLALAVARELDV-CNESLSN 324

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L V  P  GR +R    L  G FT++DE+YNA+P +++AA+ +L+ I P   GR  AVLG
Sbjct: 325 LKVDVPG-GRSRR----LKVGNFTVLDETYNASPEAVQAALELLA-IQP---GRHFAVLG 375

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----------HVLALKDALPRSIHVHY 426
            M E+G+ S + H  +AE         + L G            +    ++LP   H+  
Sbjct: 376 TMLELGDQSVALHRQVAE-----RAVQIGLDGLVVVAAGAEAEAMATAAESLP---HLAV 427

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +     +Q+ L  GDVV++K+S      +LI LL
Sbjct: 428 VANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465


>gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 456

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 218/452 (48%), Gaps = 33/452 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR I     F  +   + DGH ++  A+  GA   +   D   +I   SI V 
Sbjct: 25  ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +L     ++    ++AITGS GKTTTK+M    L++    +    ++NN 
Sbjct: 83  PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +AVIT I  AH+  F   + I
Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G + +N D+    LL  K+  +  + + +FG   N D  +R     
Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNND--MRAMDIV 256

Query: 267 SE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           S+         +W EV           + IG +   N L  L + +I    VD   KAL+
Sbjct: 257 SDATKTSFKVATWPEVDF-------TINMIGAYNVFNALAALSVGNIYHIPVDKMQKALA 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R +       +    ++ + YN+NP ++K  +    Q+    EG+RI VLGDM
Sbjct: 310 SFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDM 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFL 435
            E+GE +   H DLA+ ++   I  V+L G  +  L + L        +H+ +  D L L
Sbjct: 365 LELGEKAAEMHSDLAQAINPDRIDSVYLCGELMGYLAEKLREKFDETQIHHYQKDDLLTL 424

Query: 436 F--IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +++ L+  D+V++K+S+      +++ L+
Sbjct: 425 TSDLKNELMPDDIVLLKASHGIHLENVVSELI 456


>gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
 gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 197/390 (50%), Gaps = 26/390 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   L Q  QG  I   P     ++ +S DSR IA    F A+KG  +D HDF    V  
Sbjct: 5   TLAQLAQITQGQ-IESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQVVVT 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V   +     ++  P   V D   A+ +LA   R +S+A I+ +TGS GKT+ K
Sbjct: 64  GAKALLVERKL-----NVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGKTSVK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    LS   KT    G+ NN IGVPLTL R+  D +F + E+G +H  EI + T++V+
Sbjct: 119 EMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTTNIVK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++  +  AHL+ F   E +A+AK EI++G+ + GT  +N  DS+ E  + +     
Sbjct: 179 PEAALVNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGTAIVNL-DSYSEKWQFQPR--- 234

Query: 244 IKTI--YSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +T+  YS      ADF     + KQ +    +   +   S+++     G H   N+L  
Sbjct: 235 -QTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPV--GSVDITLPLPGRHNIANVLAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A ++     ++      GR    R + ++    ++D++YNAN  SM AAI V
Sbjct: 292 SALAISVGASLEDIKNGIAKTQAVPGRLYPVRLSEHK---VVLDDTYNANDGSMIAAIQV 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           L ++     G RI V+GDM E+G+ ++  H
Sbjct: 349 LEKMP----GYRILVVGDMGELGDYAEDCH 374


>gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
 gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
          Length = 453

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 216/449 (48%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S DSR+I  +  F A+ G  +D HDF   A+  GA  ++V  ++ A    L +   
Sbjct: 24  ISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQRELEADCSQLVVA-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL +L      + +   +AITGS GKTT KEM+   LS   +     G++NN 
Sbjct: 82  ---DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   +  + + ELG +H+GEI + T LV+P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263
             AK EI++GL +     +N D +  E  KA    L  KT+ +F  +  NADF  R  + 
Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S+  V   G+ ++V    IG H   N L    +   + A +      L+  H  
Sbjct: 256 NALGVASFTLVTPIGE-VDVELGIIGQHNVANALSAAALSLEMGASLAEIRHGLA--HLS 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+     L +    LID+SYNA+  +MKAA+ +L   S      R  +LG+M E+G+
Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +    V   G     + D        H+  T   +  FI+  +  
Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423

Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468
                 V++VK +NS G  ++   L E+F
Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 463

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 29/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   DGH+FI  A Q GA       ++  +      P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGT------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++IA  
Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G+   G +    D      L         + +  FG  +  D    +  + S  
Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I AL       G    
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G+ S   H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440
             L + L+  NI  +   G H+  L     +   +  VHY       +  + +  ++Q+ 
Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   D +++K S+S    +L+  L+ +
Sbjct: 429 LNPFDQILLKGSHSMSLEKLVERLVTD 455


>gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 463

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 214/450 (47%), Gaps = 35/450 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---F 86
           I  DSR I   + F  +KG   DGH+FI  A Q GA         VA+     +P     
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGA---------VATFSEKELPGKPHL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A  KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN 
Sbjct: 79  LVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++I
Sbjct: 139 IGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G+   G +    D      L         + +  FG  +  D    +  + 
Sbjct: 199 AQGKMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKD 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S      V     S+ +     G + A N ++   +  +L    +  I AL       G 
Sbjct: 253 SLTFTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGN 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G+ S 
Sbjct: 308 RTEWKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV--LA-LKDALPRSIHVHY------SETMDGLFLFI 437
             H  L + L+  NI  +   G H+  LA L   +  +  VHY       +  + +  ++
Sbjct: 366 ILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYSAEQVHYFLKTEQEDQFEAMAQYV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           Q+ L   D +++K S+S    +L++ L+ +
Sbjct: 426 QNILNPFDQILLKGSHSMSLEKLVDRLVTD 455


>gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232]
 gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes
           MGAS8232]
 gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 463

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 29/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   DGH+FI  A Q GA       ++         P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELSGK------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++IA  
Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G+   G +    D      L         + +  FG  +  D    +  + S  
Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I AL       G    
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G+ S   H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440
             L + L+  NI  +   G H+  L     +   +  VHY       +  + +  ++Q+ 
Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   D +++K S+S    +L++ L+ +
Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455


>gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
 gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
          Length = 494

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 205/465 (44%), Gaps = 61/465 (13%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   +L QA QG   HS     +     I  D+R I   + F AIKG  +D HDFI +A 
Sbjct: 9   WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           Q+GA   +V       +    +P   V D   AL  L    + R  A    T+IA+TGS 
Sbjct: 67  QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +
Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236
              +VRP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+ ELLK
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238

Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278
             S     K   SFG+     + A  +         +    V + G              
Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296

Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         S+ V    IG H   N L        L   ++   K L    P +G
Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  R    L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +
Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428
              H  L   L+L  I HV   G H+     A+   + I  HY++
Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTD 453


>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 459

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 211/447 (47%), Gaps = 25/447 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G++ DSR +   + F  ++G   DGH+F+  A Q GA   +   D   S      P  
Sbjct: 26  VSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQNGASATLWAADR--SYEDDGYPRI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD L AL +L      +    ++A++GS GKTTTK+M+   LS+   + KTYA   ++
Sbjct: 83  VVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTKDMIASILSTQMNVTKTYA---NF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M  + +  + E+GMSH GE+  L+ LV P IAV+T I  AH+  F   
Sbjct: 140 NNAIGVPVTLLNMESNTEAVVVEMGMSHFGELDELSKLVTPDIAVLTMIGEAHIEFFGSR 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + IA AK EI  GL + GT   N D+      +AK    G KT   FG+  + D      
Sbjct: 200 DRIADAKMEITHGLREDGTFVYNGDEPLLR-ERAKDLKQGQKT---FGRQLDNDIYATSV 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +Q       +V L     E     IG +   N +  + +  +L          L+     
Sbjct: 256 EQSDHDLRFKVNLWPDE-EFTIPMIGEYNVNNAMAAMMVGHLLHVTPSHLKIGLANVELT 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R +       Q    ++ + YN+NP ++K  +  L+++     GRR+ VLGDM E+G+
Sbjct: 315 ENRAE---WLTGQQGEKILSDVYNSNPTAVKEVLETLNELPE--TGRRLIVLGDMLELGD 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438
            S   H  LA  +   +   V+L G  + ALKD L     P +   HY+       +   
Sbjct: 370 ASAKLHAGLATEIDHQHFQKVFLVGNEMTALKDQLLADGYPAADLKHYASDDQDQLIDDL 429

Query: 439 SSLVDG-DVVVVKSSNSCGFYRLINLL 464
              +   D+V++K S+      ++N L
Sbjct: 430 QKTIQADDIVLLKGSHGIHLENVLNAL 456


>gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 459

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 187/364 (51%), Gaps = 24/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR     + F A+ G ++D HDF+   + KGA  +V   D V   G L     
Sbjct: 29  INRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALVSRDDFVGVSGCLK---- 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD L AL KLA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 85  -VDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLATVLREKFGADAVLATAGNF 143

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202
           NNHIG+PLTL  +  +  + + E+GM+H GE+  LT + +P++A++     AH+   F+G
Sbjct: 144 NNHIGLPLTLLNLRENHRYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNG 203

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +++IA AK+EI++G+++ G   L  DD+   + +A    L ++T  +FG ++  D     
Sbjct: 204 VDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQAACKNLNLQT-QTFGFAQ-GDIHAEN 261

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  S  ++ +QG   E VH  +   G H   N      +       +    + L+ 
Sbjct: 262 LVLQPLASEFDL-IQGS--ECVHITLPVAGRHNVSNACAAAALALAGGVKLTEIARGLAN 318

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F   +GR +      N    T++D++YNANP SMKAA+ VL+++       R+ V+GDM 
Sbjct: 319 FANIKGRLQVKHGIKNS---TILDDTYNANPDSMKAALDVLAKMP----APRVFVMGDMG 371

Query: 380 EMGE 383
           E+GE
Sbjct: 372 ELGE 375


>gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
 gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
          Length = 476

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 206/449 (45%), Gaps = 31/449 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR   P   F A  G   DGHDF    V+ GA  V+ +         + +P   V+DV 
Sbjct: 34  DSREAGPGSLFVAFVGERVDGHDFAARVVEAGAAAVLASR-------PVGVPAIVVEDVQ 86

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA     R   T++A+TGS GKT+TK+++   L     T    GS NN IG+PLT
Sbjct: 87  AALGALARHVVGRLGTTLVALTGSAGKTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLT 146

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 +  F + E+G   +G IR+LT L  P + ++  +  AH+  F G E+IA AK E
Sbjct: 147 ALTATEETKFLVLEMGARGIGHIRYLTGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGE 206

Query: 213 IFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
           + E L   E+ G   LN DD     + +++ A     +  FG+S  AD +    +   S 
Sbjct: 207 LVEALPPAEEGGAAILNADDPLVRAMASRTKA----KVILFGESDEADVRAENVRLTDSG 262

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q    +     + +V     G H   N L    +   L    D   +ALS    + G   
Sbjct: 263 QPSFRLHTPSGACDVTMRLYGEHHVSNALAAAAVAHELGMPADEIARALS----EAGSLS 318

Query: 329 RYRCALNQ--GFFTLIDESYNANPAS---MKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           R+R  + +     T+++++YNANP S      A++ + + S    GR  AVLG M E+G+
Sbjct: 319 RWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAMGKASQAKGGRTWAVLGKMAELGD 378

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            + + H  +  +    N+S +   G        + A  +       VH S+    + L +
Sbjct: 379 EALAEHDAVGRLAVRLNVSKLVAVGGREAAWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 437

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +S L  GDVV+VK+S S G   +   LLE
Sbjct: 438 RSELRPGDVVLVKASRSVGLESVAQALLE 466


>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 451

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 217/445 (48%), Gaps = 32/445 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  D+R + P E F A+ G  +DGH F+  A+ +GA   +V+     +     +PV  V
Sbjct: 32  GIQTDTRVLQPGEIFLALGGEKFDGHQFVEMAITRGAVAAIVDY----TYNYPDLPVIKV 87

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            + L A  +LA   R +    +I +TGSVGKTTTKE++   L +  K +   G++NN IG
Sbjct: 88  SNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIAAVLGTRGKVHKTHGNFNNEIG 147

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL  +    DF + E+ M   G+I  LTH+ +P+I VIT +  AH+      + IA 
Sbjct: 148 VPKTLLELSQGDDFAVIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGSEQAIAE 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+   +       LNYD+    LL A +  +    + S+G S   D Q +       
Sbjct: 208 AKCELLAEMPNDSVAVLNYDNP---LLMATAKQVWSGEVISYGFS-GGDIQGKL------ 257

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             + +V++ G ++ +   G+  H   N L  L +  +L  D       ++V  P +GR +
Sbjct: 258 VDYQKVEVGGMTLPLPLAGV--HNGSNFLAALAVAKVLGVDWKLLEAGINVTMP-QGRSQ 314

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            ++   +     ++DE+YNA P +M AA+ +L+Q       R+IAVLG M E+GE S   
Sbjct: 315 SWKLPRD---IMILDETYNAAPEAMLAALELLAQTPGR---RKIAVLGAMKELGERSTKL 368

Query: 389 HIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           H  + E +   N+  + +         ++     +P     ++S+ +  L  ++Q     
Sbjct: 369 HQQVGETVKKLNLDGLLVLVDGPDAETIVTSAQGIPCERCHNHSDLVSLLKTYVQP---- 424

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
           GD ++ K+++S G  +++     E 
Sbjct: 425 GDRLLFKAAHSVGLEKVVQQFCGEI 449


>gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
 gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
          Length = 466

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 208/449 (46%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   + A+I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPIDANIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTTEIREAAKSH-----HIMSFGTGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL   +     S++ +   G+           H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHTPQGS---SFVRLPFAGE-----------HNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +D  +K L     ++ +G + R   + +     ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLDDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAQLPLDHIIAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 455

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 212/447 (47%), Gaps = 18/447 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+RS+ P   F  + G H DGH+ +  A+ K A           +    ++ +F
Sbjct: 18  IQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAAALSKEAAAAFWKRGY-PNPPEDAVLIF 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +L+   R +  A II ITGS GKTTTK+++   L +  + +   G+ NNH
Sbjct: 77  -VDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNH 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL ++  D +  + E+GMS  GEI  L+ L +P +A+IT I  AHL      EEI
Sbjct: 136 IGLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEI 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI  GL+  G    N D+   + +  +          SFG KS N  + +     
Sbjct: 196 ARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIG 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S+   +LQ    E     +G H   N L  +     L    +   + L        
Sbjct: 256 NDGSSF---RLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQGLRDVQLS-- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R      +  FT+++++YNA+PA+ KA +S++ Q+   G   +  VL DM E+GEL 
Sbjct: 311 -GMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLK--GYRHKYVVLADMLELGELE 367

Query: 386 QSFH-------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           + FH        +LAE   L  I      G ++     A    ++ ++ E    +   ++
Sbjct: 368 EQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALK 427

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +   DVV+VK+S       ++N LL
Sbjct: 428 EVIHPEDVVLVKASRGMKLEDVVNFLL 454


>gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
 gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
          Length = 500

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 195/411 (47%), Gaps = 47/411 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  D+R I   + F AI+G ++DGHD++  A  KGA L +V+  + + +     P   V 
Sbjct: 33  IITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKGAVLAIVSRAVESDL-----PQLVVT 87

Query: 90  DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D   AL KL    R +     ++AITGS GKTT KEML   L+ I  T    G+ NN +G
Sbjct: 88  DTKLALGKLGAYRRDQHPNLKVVAITGSSGKTTAKEMLGSILNRIAPTLITRGNLNNDLG 147

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP+ L  +     + + ELG +H+GEI + T LV+P +A +  I  AHL  F G + IA 
Sbjct: 148 VPMMLLELTDAHRYAVMELGANHVGEIAYTTQLVKPDVACVLNIGTAHLGEFGGRDNIAK 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWK 264
            K+EI++GL   GT  + + D +F+ L   +     + I +FG+      +A   +++ K
Sbjct: 208 TKSEIYQGLSDAGTAIVPFGDDYFDTLLNNAQQF-TQNILTFGERDVSLADAGVDMQQAK 266

Query: 265 QCSEQSWMEVQLQG--------------------------KSMEVVHHGIGYHMAQNMLM 298
           +        V L G                          +S  V  +  G H   N L 
Sbjct: 267 EIGLTDEDTVLLMGDVFADDVEVGNTSTFSLNFNFEIDEIESQNVSLNFAGEHNISNALA 326

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +D   K L    P +GR       +  G  TLID++YNANP+++ AA  
Sbjct: 327 AAACAQALGLSIDDIAKGLDAAKPAKGR----LNFIEFGKHTLIDDTYNANPSAVLAATQ 382

Query: 359 VL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           VL SQ +P      + VLGD+ E+G+ +Q  H  L E ++   ++ ++  G
Sbjct: 383 VLVSQGAP-----TMLVLGDIGELGDAAQEEHRKLGEAIAASGVTVLYTVG 428


>gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius CECT 5713]
          Length = 456

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 219/452 (48%), Gaps = 33/452 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR I     F  +   + DGH ++  A+  GA   +   D   +I   SI V 
Sbjct: 25  ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +L     ++    ++AITGS GKTTTK+M    L++    +    ++NN 
Sbjct: 83  PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +AVIT I  AH+  F   + I
Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G + +N D+    LL  K+  +  + + +FG   N D  +R     
Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNND--MRAMDIV 256

Query: 267 SE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           S+         +W EV       +   + IG +   N L  L + +I    VD   KAL+
Sbjct: 257 SDATKTSFKVATWPEV-------DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALA 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R +       +    ++ + YN+NP ++K  +    Q+    EG+RI VLGDM
Sbjct: 310 SFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDM 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFL 435
            E+GE +   H DLA+ ++   I  V+L G  +  L + L        +H+ +  D L L
Sbjct: 365 LELGEKAAEMHSDLAQAINPDRIGSVYLCGELMGYLAEKLREKFDETQIHHYQKDDLLTL 424

Query: 436 F--IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +++ L+  D+V++K+S+      +++ L+
Sbjct: 425 TSDLKNELMPDDIVLLKASHGIHLENVVSELI 456


>gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 455

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D  
Sbjct: 13  GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii SDF]
 gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii]
          Length = 466

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 212/467 (45%), Gaps = 70/467 (14%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W    L QA QG+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      
Sbjct: 14  WIAQQLQQATQGYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAAN 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   + A I  L      V D   AL +L    R + ++  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPIDAEIAQLV-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V
Sbjct: 129 KEMLGSILSRLAPTLINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSH 240
           +PH+A I  I  AHL  F G + I  AK+EI+  +   G   +   D F   ++  AKSH
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH 248

Query: 241 ALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 I SFG              ++A+FQL                QG S  V     
Sbjct: 249 -----QIMSFGAGGDVFATEIELLPQSANFQLHT-------------PQGSSF-VRLPFA 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYN 347
           G H  QN    +     L   ++  +K L     ++ +G + R   + +     ID++YN
Sbjct: 290 GEHNVQNATAAVAFALALGVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYN 344

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
           ANP SM+AA  VL Q +    G ++ V+GD+ E+G+ S   H DL   L+   + H+   
Sbjct: 345 ANPTSMRAAAQVLLQQN----GIKVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIVAV 400

Query: 407 ----------SGFHVLALK------DALP---RSIHVHYSETMDGLF 434
                     +G H   LK      +ALP     I  H  ++M  LF
Sbjct: 401 GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
 gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
          Length = 461

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 208/447 (46%), Gaps = 16/447 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  IS DSR I     F A+ G  +D HDFI    +KG+  V+VN ++      +  
Sbjct: 27  QLIIKSISTDSRKIDEDCLFIALAGERFDAHDFIADVKEKGSVAVLVNREI-----DVDC 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V D   A+ ++A   R  S A I+A+TGS GKT+ KEM    L    +T    G+ 
Sbjct: 82  PQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGSSGKTSVKEMTASILRHCGETLYTHGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +  F + ELG +H+GEI +  ++V+P  A++  +  AH+  F  +
Sbjct: 142 NNDIGVPLTLFRLAPEHRFAVIELGANHIGEIAYTVNMVKPDSALVNNLFSAHIEGFGSL 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EIF  L++ GT  +N D +   L +   +A   K  +S    +NADF   + 
Sbjct: 202 EGIAQAKGEIFTHLKEQGTAIINLDSNDLPLWEHHLNARQTKWSFSLSAQRNADFYPTEI 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   +      +EV     G H   N L    +     A ++     LS    K
Sbjct: 262 AVKQFITNFTLHTPEGCVEVTLPLPGRHNIANALAASALALSAGATLEDIRLGLSTL--K 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMG 382
              G+ Y   L  G   L D++YNAN  SM A + VLSQ+     G +I  V GDM E+G
Sbjct: 320 AVPGRLYPVELTTGKMVL-DDTYNANDGSMIAGLQVLSQLP----GYKIFFVAGDMAELG 374

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSL 441
           + S+  H D+        I  V   G H   + D      H  + ++ +  L   +Q   
Sbjct: 375 KDSEKCHRDVGRFAHNAGIDSVLTVGEHSHFISDENQGGQHFAFKADLLAQLIPLLQQH- 433

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            D   V+VK S S     ++N L E F
Sbjct: 434 -DVVSVLVKGSRSSAMEDIVNALKECF 459


>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
           propionicus DSM 2379]
 gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter propionicus DSM 2379]
          Length = 469

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 174/365 (47%), Gaps = 15/365 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S DSR++A  + F  ++G  +DGHDFI     KG   V+ +      I    + V 
Sbjct: 23  VSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAAVLADQSFDGEI-PPGLTVV 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL  LA A R R    ++ ITGS GKTTTKEML   L          G+ NN 
Sbjct: 82  RVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTKEMLATILEQTGPGLKTAGNLNNL 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P  L R+     + + E+GMS  GEI  L  +  P   ++    PAHL +   +E +
Sbjct: 142 IGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAAPQTGIVLNACPAHLESMGSVEGV 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+   L   G   +N DD    L+  +    G++ + +FG   +AD +  +    
Sbjct: 202 ARAKGELLLRLPAGGCAIINADDP---LIAGQPSPPGVRRL-TFGLG-DADVRATEITSL 256

Query: 267 --SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               QS++ + L    + VV    G H   N L        L    +     L  F P +
Sbjct: 257 GIGGQSFL-LHLGEIVLPVVLWSYGRHAVYNALAAAAAAHGLGIAAELIQSGLERFRPYD 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              KR++   + G   LID+SYNANPASM+AA++ L ++   G GR    LGDM EMG  
Sbjct: 316 ---KRFQLE-DVGGLVLIDDSYNANPASMEAALTTLGEL--KGGGRAFVALGDMLEMGSN 369

Query: 385 SQSFH 389
               H
Sbjct: 370 EAELH 374


>gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
 gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
          Length = 455

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D  
Sbjct: 13  GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
 gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
          Length = 457

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 194/385 (50%), Gaps = 17/385 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SI+SR++ P   F   KG H DGH F+  A++KGA   +   D+      L +P+ 
Sbjct: 27  IKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDALRKGAAAALWQQDVPNP--PLHLPIL 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A+ +L+ A R      +  ITGS GKTT K+M    LS   K     G+YNNH
Sbjct: 85  VVEDTLKAVQQLSEAYRNELDIKVAGITGSNGKTTVKDMTARLLSLRYKVQKTEGNYNNH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL  +  D +  + E+GMS  GEI FLT L RP + +IT I  +HL +      I
Sbjct: 145 LGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARPDVVMITNIGESHLQDLGSRAGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQLRKWKQ 265
           A AK EI EGL+  G I  + D+    LLK + +   G   + SFGK ++      +  Q
Sbjct: 205 AKAKLEIIEGLKDDGMIIYHGDEP---LLKDRLNGYSGPAKVRSFGKGQSNSIYPVRIDQ 261

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + S  +  L    ME     +G H   N L  +     L    +   +  +       
Sbjct: 262 EEKGSVFQANLS--DMEYHLPVLGVHNVMNALCAMEAAHFLGIPYEQMNEGFASL----- 314

Query: 326 RGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R  L++G     +I+++YNA+P SM+AAI ++S++S  G   ++ VL DM E+G+
Sbjct: 315 KLTAMRMELSEGCKGEKVINDAYNASPTSMRAAIDLVSELS--GYSIKVLVLADMLELGD 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
               FH ++ + +    I +V   G
Sbjct: 373 DEVRFHREIGQAIDPEKIDYVLTFG 397


>gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1087]
          Length = 456

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++   A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYTALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. RCC307]
 gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. RCC307]
          Length = 464

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 211/446 (47%), Gaps = 32/446 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR++ P + F  ++G  +DGHDF+  AV  G    ++  D    +    +    VD
Sbjct: 37  ISTDSRALQPGDLFIPLRGERFDGHDFLDAAVSVGVAGALIARDWAGYVPE-QLATVVVD 95

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  ++A+A R +    ++A+TGS GKTTT+E++   LS +    + +G+ NN IGV
Sbjct: 96  DTLSAYQQIALAWRRQLHCPVVAVTGSAGKTTTRELIKACLSPLGAIESSVGNENNDIGV 155

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+ R        + E+GM  LGEI  L+    P +AVIT I  AH+        IA A
Sbjct: 156 PRTMLRSNSSHAGLVLEMGMRGLGEIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQA 215

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCS 267
           K EI + L+ +G + +   D   E          +  ++S    + A  D  L       
Sbjct: 216 KCEITDRLKPSGLLVIPAGDPLLE--------AEVSRVWSGRVQRVALSDDPLEPGTPAP 267

Query: 268 EQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  W+  QLQG+S+E+   G+       G H A+N L+ L     L    +  ++ LSV 
Sbjct: 268 D--WV-AQLQGQSIELASQGLKLINPLEGRHNARNFLLALAAAQELGVTAEQ-LRDLSVS 323

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P  GR +R R         ++DE+YNA+P +M A++ +L Q      G R AV+G M E
Sbjct: 324 LPG-GRARRLRI----NGVNILDETYNASPEAMLASLELLKQ---QPGGHRYAVVGTMLE 375

Query: 381 MGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           +G+ S S H  + E  +   +    V  SG    AL         +    + +     ++
Sbjct: 376 LGDQSLSLHRQVGEKATALGLDGLVVVASGPEASALMQGAAGLSKLVCVASPEAAAEPLK 435

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
             L  GD V++K+S      RLI LL
Sbjct: 436 QLLRPGDHVLLKASRGIALERLIPLL 461


>gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 415

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A +      L+      GR    +
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+ 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374

Query: 392 LAEVLSLYNISHVWLSG 408
           + E      I  V  +G
Sbjct: 375 VGEAAKAAGIDRVLSTG 391


>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
 gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
          Length = 450

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 220/470 (46%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 4   TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 60  S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    +  +  + L   I+ +L   D +++K SNS G + ++  L
Sbjct: 397 NQKYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 446


>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
 gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 22/434 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR I P + F A++G  +DGHDF+  A+  GA   +V+ D        +  +  VD
Sbjct: 32  LTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAGHLLQVD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A  ++A   R R    +I ITGSVGKTTTKE++   L+          +YNN IGV
Sbjct: 92  NTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLKTEANYNNEIGV 151

Query: 150 PLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P T+ ++  D  +  + E+GM   G+I  L  + +P+IAVIT +  AH+      + IA 
Sbjct: 152 PKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAE 211

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+   L  TG   LN D+     L A +  L +    ++G  +N D Q     Q  +
Sbjct: 212 AKCELLAQLSGTGLAILNADN---HRLIATAQRLNLPRCRTYGL-QNGDLQ----GQLID 263

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              + V+ Q   + +     G H A N L  L I   L  D + A + LSV  P +GR +
Sbjct: 264 LETLVVEGQRFRLPLP----GAHNALNFLAGLAIAQELGLDWE-AFRDLSVTLP-QGRAR 317

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R   + +     L+DE+YNA   SM AA+ +L+        RRIAVLG M E+G+ S+++
Sbjct: 318 RIELSPD---IVLLDETYNAGLESMLAALQLLADTPGQ---RRIAVLGTMKELGDFSETY 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  + E  +   +  + +       A   A   +I        + L   ++ S+  GD +
Sbjct: 372 HRQVGEKAAALGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSELRQSVQTGDRL 431

Query: 448 VVKSSNSCGFYRLI 461
           + K+S S    R++
Sbjct: 432 LFKASRSVALDRIL 445


>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
 gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
          Length = 470

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 213/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         + +G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNIIGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468


>gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 458

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 219/446 (49%), Gaps = 25/446 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SI 83
           F   I +DSR I   + F A+ G + DGHDFIL A  +GA   +V++     I  L   I
Sbjct: 28  FSGLIRVDSRKIEEGDLFVALSGKNMDGHDFILDAFSRGAHCALVSSSWGEKIRDLPEGI 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142
            V  V D    L K+A   RL+    +IA+TGSVGKT+T+EM+ +AL  S    Y    S
Sbjct: 88  RVIEVADPEQGLIKIA-RHRLKGLKNVIAVTGSVGKTSTREMIFLALGGSSSGVYRARSS 146

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N  IG  LT+A MP D    I E+G +H GEI  +  L     AVIT IAPAHL     
Sbjct: 147 HNTRIGCALTVAEMPEDTSVLILEMGTNHPGEISEMVDLYPVDTAVITEIAPAHLEGLGS 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQ 259
           +E +  AK EI E       IF   +      +K +S     + + S G S +    D +
Sbjct: 207 LEGVLDAKLEILESPNLRKVIFNGDNPMLSSAVKERSFGKNWQAL-SVGSSGSYVLEDIR 265

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           L +W++    S +  + QG+S   +   + G H A  + +       L    + A   LS
Sbjct: 266 L-EWQERPVLSMIIGEKQGRSSYGIKAKLTGIHNASLLGIAWATAVELGISPEEASIRLS 324

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P  GRG       ++G   ++DESYNANP SM+A + +++Q SP    +R+ +LG+M
Sbjct: 325 SIKPYHGRG----VLKDRGGILVLDESYNANPKSMEALLDLVAQ-SPFPREKRLLILGEM 379

Query: 379 CEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE S S H + L + L L     V+L G   ++LK        V   E ++ L   +
Sbjct: 380 GELGEGSLSLHEEILKKALPL---GTVFLFGSMWISLKPP------VKVYEDIESLSSDL 430

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463
           +S L  G  + +K S + G  RL+ +
Sbjct: 431 KSLLSKGYFIAIKGSRTNGLERLMEI 456


>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 447

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 186/373 (49%), Gaps = 34/373 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV--D 89
           +DSR       F A  G H DGH +   A Q GA  V         +GS   P+  V  +
Sbjct: 31  LDSRRAQQGSLFLAFAGEHVDGHAYAEQAGQAGAAAV---------LGSRPTPLPTVVAE 81

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LAV    RLR + T+  +TGS GKT+TK++L   LSS  +T A  GS+NN +
Sbjct: 82  DTQAALQALAVHVVGRLRDRLTVFGVTGSQGKTSTKDLLAAVLSSAGQTIATFGSFNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R      F   E+G  HLG+I  LT LV P IAV+  +  AHL  F   E IA
Sbjct: 142 GVPLTMLRTEATTRFLALEMGARHLGDISELTGLVAPDIAVVLNVGQAHLGEFGSREAIA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-----LRK 262
            AK E+ +GL   GT  LN DD     ++    +L  + + +FG++++AD +     L +
Sbjct: 202 KAKGELVQGLAPGGTAVLNADDPRVAAMR----SLTDRPVLTFGRTEHADVRALGLALDR 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             + S      ++    S  V    +G H A N    +    +    +DTA   L+    
Sbjct: 258 LGRPS----FTLRTADASAPVSLPHVGAHQALNASAAVAAGLVAGVPLDTAAAMLATASL 313

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEM 381
              R +    A       L+++SYNANP S +AA+  L+ I    EGRR IAVLG+M E+
Sbjct: 314 SRWRMEPRDLASGA---ILLNDSYNANPDSTRAALDALAAI----EGRRHIAVLGEMLEL 366

Query: 382 GELSQSFHIDLAE 394
           G+ S+ +H  + E
Sbjct: 367 GDDSEVWHRAVGE 379


>gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1]
          Length = 456

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SEHPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++       
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++V  A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPLGKVHYFIKNDQKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 423

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A +      L+      GR    +
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+ 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374

Query: 392 LAEVLSLYNISHVWLSG 408
           + E      I  V  +G
Sbjct: 375 VGEAAKAAGIDRVLSTG 391


>gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 452

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 193/378 (51%), Gaps = 18/378 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T    G++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H G I +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGAIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330
             +Q    S++V+    G H   N L     +S+       AIKA L+      GR    
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLAAIKAGLAALKAVPGRLFPI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+
Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373

Query: 391 DLAEVLSLYNISHVWLSG 408
            + E      I  V  +G
Sbjct: 374 QVGEAAKAAGIDRVLSTG 391


>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 444

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 229/465 (49%), Gaps = 25/465 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  DLL A  G  +    + F    SID+R+I   + FFA+KG   DGH+F+  A+ K
Sbjct: 1   MFTLDDLLIATGGKLVSKGNEIFKEA-SIDTRTIGKNDLFFALKGSKKDGHEFVDEALIK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +G VV   +    +   +  V  VDD L +L  LA   R + K  IIA+ GS GKTTTK
Sbjct: 60  ASGAVVSKNE---GMDFKNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS   K     G++NN+IGVPL ++R+  + +  + ELG +  G+I+ L  +V 
Sbjct: 117 ELIASFLSKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKELCDIVY 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A+IT I   H+  F  I+ +   + EI   L    T+F N DD F  L+       G
Sbjct: 177 PDYALITNIGYEHIEGFGSIQGVREGELEI---LPYVKTVFANGDDKF--LMDGLKRYSG 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +FG SK  DF+       ++    +      +  V    +G +   N+   + + 
Sbjct: 232 --QILTFGMSKECDFRAENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNLTGAIAVA 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L     +  +    F   + RG+  +    + FF    ++YNANP+SMK A   L ++
Sbjct: 290 TFLGISKCSIQQITESFTSVKMRGEIIKINGVEIFF----DAYNANPSSMKVA---LQEL 342

Query: 364 SPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRS 421
           +   +GRR +AVLGDM E+GE +   H ++ + ++   I   + +  F    +K+AL   
Sbjct: 343 TRRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFIGVGKF----IKNALRYV 398

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +++ +     F++  L   ++V++K S +    +++ +L E
Sbjct: 399 NGYVFNDPIQAA-EFLKKELKGSEIVLIKGSRAMKLEKILEILKE 442


>gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
 gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
          Length = 457

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 224/478 (46%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q ++  + + + P   +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V ++   VA+      P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  A-VVTLSEKKVANQ-----PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+ + G++ L   DS  E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-RPGSLLLAPADSIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QTLDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIRQAFQNLDLTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELSQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  +GL   +++SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTADEDQFEGLVKQVKASLGTNDQILLKGSNSMNLAKLVESLENE 455


>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium DO]
 gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
 gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
          Length = 470

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 220/470 (46%), Gaps = 38/470 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A+  GA
Sbjct: 24  TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 79

Query: 66  GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                     AS  SL +       PV  V D L A+ +LA     +  A ++AITGS G
Sbjct: 80  S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 130

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L
Sbjct: 131 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A 
Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 250

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+ +FG   N D       +   Q+  +  ++G++  +   G  Y++  N L+
Sbjct: 251 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I       +    + L+     + R   +  A N     ++ + YNANP +M   + 
Sbjct: 302 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 358

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L
Sbjct: 359 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 416

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               P+    +  +  + L   I+ +L   D +++K SNS G + ++  L
Sbjct: 417 NQKYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 466


>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 192/392 (48%), Gaps = 18/392 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120
            KGA  +V+    V  +    + V    D L AL  LA   R R +   ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPVVLVP---DTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFL 178
           T KEM    L   ++     G+ NN +G+PL+L  +PV+    F + E+GM+  GEI  +
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSL--LPVEHSHRFAVLEMGMNRPGEIARM 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A+
Sbjct: 206 AEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAAR 265

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   G + I ++G+++NA  +    +   E      + +      V    +G H   N L
Sbjct: 266 T---GQQRI-TYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNAL 321

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + +            L+ + P     KR +         LID++YNANP+SM AA+
Sbjct: 322 AAAALATAAGVSPAEIAAGLAAYRPF---AKRMQLQPFIAGLKLIDDTYNANPSSMLAAL 378

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           + +  +    + R +AVLGDM E+GE S + H
Sbjct: 379 ATVHNLRR--QRRVVAVLGDMLELGEQSVAAH 408


>gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
 gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
          Length = 434

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 197/405 (48%), Gaps = 39/405 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I     FFA+KG  +DG+ +   A+QKGA   VV+   VA+     +     +
Sbjct: 18  VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDPTVANGDRFLL----FE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R      ++A+TGS GKTTTKE++   LS    TYA  G+ NNHIGV
Sbjct: 74  DGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLNNHIGV 133

Query: 150 PLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           PLT+  + P   +  + E+G +H  EI  L+ + +P   +IT I  AHL  F G+  I  
Sbjct: 134 PLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQPTHGLITNIGKAHLEGFGGVSGIIK 193

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+F+ L +K GT+F+N        + +K  A G    Y                 CS
Sbjct: 194 GKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAFGEIVFY-----------------CS 236

Query: 268 EQSWMEVQLQGKSMEVVH---------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           E S +   L  ++  VV          H  G +   N+   L +      +   A +A++
Sbjct: 237 ENSPINPTLIEENPNVVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADAYEAVA 296

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +     + +G  T+I ++YNANP+SM AA++   ++      R+I +LGDM
Sbjct: 297 TYEPDNNRSQ----IVKKGTNTVIMDAYNANPSSMAAAVANFGRME---AARKILILGDM 349

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            E+G+ +   H+ L + ++      V L+G  +     ALP++ +
Sbjct: 350 FELGDAAPEEHLALGKQIAGEKFDVVILAGKLMQHALPALPKAYY 394


>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
 gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
          Length = 457

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 216/467 (46%), Gaps = 38/467 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L  A++G       +    G+  D+R       F A++GP +D H+ +       A
Sbjct: 5   TGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV-------A 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +     +V  +  +  P   V D   AL +LA   R RS+A +IA+TGS GKTTTKEM
Sbjct: 58  ADLPAAVLLVERVLDVPHPQVVVADTGEALGRLAQHWRRRSRARVIALTGSNGKTTTKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L  +   +A  G+ NN IGVPLTL  MP D D+ + E+G +H GEI  +     P 
Sbjct: 118 LRCILEGVGSVHATQGNLNNEIGVPLTLLAMPEDTDYAVIEMGANHAGEIGRMARWTEPM 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSF--FELLKAKSHAL 242
           +A+IT    AHL  F  +E +A AKAEIF GL  + GT  +N DD F  + L   + H  
Sbjct: 178 VAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFADYWLSLNEHHHC 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              ++   G+ +        W Q  ++  + +   G+ + +     G H+A N +     
Sbjct: 238 QRFSLEGGGEIEGV------W-QAPDRLRLTILGAGRDLRLAS--PGRHVAANAIAAAAA 288

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + +   +D     L+ + P +GR +      +     L D++YNANP S++A + VL+ 
Sbjct: 289 ANAVGVAIDAIANGLAGWTPVQGRLQEL---WHVSGARLWDDTYNANPDSLRAGLEVLAA 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +     GRRI VLG M E+G  +   H +   +     +        + LAL +A   S 
Sbjct: 346 MP----GRRILVLGAMGELGAETPVLHRETGALARAMGVD-------YCLALGEAARDSA 394

Query: 423 HV-----HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +    D L   +++ L D   V++K S S    R+I  L
Sbjct: 395 EAFGEGGEWFADHDALRTRLEALLEDETTVLIKGSRSQHMERIIEGL 441


>gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
 gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
          Length = 489

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 150/489 (30%), Positives = 223/489 (45%), Gaps = 39/489 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M P+ T  ++ +A+ G  +     VP+G V  + +S DSR +     F AI+G   DGHD
Sbjct: 2   MMPM-TIGEVAEAVAGRLVEGANGVPEGAVALHAVS-DSRQVENGSVFVAIQGERVDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TI 110
           ++     +GA   +V+ ++  +    ++P   VD+ + AL  LA A   R +A     TI
Sbjct: 60  YVASVADQGAVAAIVDHEVPGA----AVPQIVVDNTVTALGDLAKANIARRRASGEPFTI 115

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGSVGKTTTK++    LS++  T A +GS+NN IG+PLT   +     + + E+G +
Sbjct: 116 IGITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNNEIGLPLTALTVGEHTRYFVAEMGAN 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H+GEI  LT +  P IAV+  +  AHL  F  +E IA AK EI  GL   G   LN DD 
Sbjct: 176 HVGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPNGIAMLNTDDE 235

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGKSMEVVHH 286
             E + A   A G    +   +S      L      ++     S+  V   G+  +V   
Sbjct: 236 HVEAMSAV--APGEVLRFGIDESNAGRDALHACDIVTDSFDRASFTMVAGDGEQSQVALA 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDES 345
             G H   N L    +   L   ++   + L    H    R            FTLID+S
Sbjct: 294 IPGAHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVSTVERGGARFTLIDDS 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +NANP SM A +  L++ S  G   R+AVLG M E+G   +  H  +    + + I  V 
Sbjct: 354 FNANPDSMHAGLDGLARWS-EGAQYRVAVLGAMLELGGDEKQLHRSIGAYAAEHGIDEVV 412

Query: 406 LSGFHVLALKDALPRSIH--------------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             G       DAL   +                H +   D + + I     +G VV++K 
Sbjct: 413 AVGSPTDQALDALAGELAQGAKNADGAMAVEWAHSAAQADDMIVRIAREH-EGTVVLLKG 471

Query: 452 SNSCGFYRL 460
           S++ G   L
Sbjct: 472 SHASGLSTL 480


>gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 463

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 209/447 (46%), Gaps = 29/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   DGH+FI  A Q GA       ++         P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELSGK------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F    +IA  
Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G+   G +    D      L         + +  FG  +  D    +  + S  
Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I AL       G    
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G+ S   H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440
             L + L+  NI  +   G H+  L     +   +  VHY       +  + +  ++Q+ 
Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   D +++K S+S    +L++ L+ +
Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455


>gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 455

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D  
Sbjct: 13  GCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
 gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
          Length = 471

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 204/438 (46%), Gaps = 32/438 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR   P   F A  G   DGHDF    V  GA  V+ +         + +P   V+DV 
Sbjct: 34  DSREAVPGSLFVAFVGERVDGHDFAAAVVAAGAVAVLASR-------PVGVPAIVVEDVQ 86

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA     R  AT++A+TGS GKT+TK+++   L +   T    GS NN IG+PLT
Sbjct: 87  AALGALARHVVNRLGATLVALTGSAGKTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLT 146

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 D  F + E+G   +G IR+LT L  P + V+  +  AH+  F G E+IA AK E
Sbjct: 147 ALSATEDTRFLVLEMGARGIGHIRYLTELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGE 206

Query: 213 IFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
           + E L   E  G   LN DD     + +++ A     +  FG+S  AD +    +   S 
Sbjct: 207 LVESLPAAEDGGAAILNADDPLVRAMASRTKA----KVILFGESDEADVRAENVRLTDSG 262

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q    +     + +V     G H   N L    +   L         ALS    + G   
Sbjct: 263 QPSFRLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSATEIATALS----EAGSLS 318

Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELS 385
           R+R  + +     T+++++YNANP SM+AA+  L  +   G+GRR  AVLG M E+G+ +
Sbjct: 319 RWRMEVTERPDGVTVVNDAYNANPESMRAALRALVAM---GKGRRTWAVLGKMAELGDEA 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            + H  +  +    N+S +   G        + A  +       VH S+    + L ++S
Sbjct: 376 LAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAIDL-LRS 434

Query: 440 SLVDGDVVVVKSSNSCGF 457
            L  GDVV+VK+S S G 
Sbjct: 435 ELRPGDVVLVKASRSVGL 452


>gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
          Length = 454

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 209/447 (46%), Gaps = 35/447 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86
           I  DSR I   + F  +KG   DGHDFI  A + GA         VA+     +   P  
Sbjct: 29  IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSERKVEGHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  +LA     + +  +IA+TGS GKTTTK+M+   LS+  KTY   G+YNN 
Sbjct: 79  LVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +PHI V+T I  AHL  F   ++I
Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSRDKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I +   DS  +    +      + +  FG    A+  +   ++ 
Sbjct: 199 AKGKLQIVDGMDSDG-ILIAPADSIVDPYLPEG-----QMVIRFGDG--AEISVNDLQES 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +       +  + + +     G + A N ++   +  +L    D  ++AL        R
Sbjct: 251 KDSLTFTTNVINRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   S+I  +  G++IAVL DM E+GE S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANSGGKKIAVLADMKELGEQSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437
             H  +   LS   +  +   G  +  L     +      V+Y       +  D +   +
Sbjct: 366 ELHKRMIMSLSPDVLDTLIFYGEDIAELAQLASQMFPLGKVYYFKKTADEDQFDDMLKTV 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Q+ L   D +++K SNS    +++  L
Sbjct: 426 QTVLQPADQILLKGSNSMHLAKVVEAL 452


>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 192/392 (48%), Gaps = 18/392 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120
            KGA  +V+    V  +    + V    D L AL  LA   R R +   ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPVVLVP---DTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFL 178
           T KEM    L   ++     G+ NN +G+PL+L  +PV+    F + E+GM+  GEI  +
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSL--LPVEHSHRFAVLEMGMNRPGEIARM 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A+
Sbjct: 206 AEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAAR 265

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   G + I ++G+++NA  +    +   E      + +      V    +G H   N L
Sbjct: 266 T---GQQRI-TYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNAL 321

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + +            L+ + P     KR +         LID++YNANP+SM AA+
Sbjct: 322 AAAALATAAGVSPAEIAAGLAAYRPF---AKRMQLQPFIAGLKLIDDTYNANPSSMLAAL 378

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           + +  +    + R +AVLGDM E+GE S + H
Sbjct: 379 ATVHNLRR--QRRVVAVLGDMLELGEQSVAAH 408


>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
 gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
          Length = 454

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 212/453 (46%), Gaps = 50/453 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  D+R + P E F A++G  +DGH+F+  A+ KGA   +V+      +     PV  V 
Sbjct: 33  IQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAIAAIVDYAYENPV----FPVLQVT 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  ++    R      +I +TGSVGKTTTKE++   L++  + +   G++NN IGV
Sbjct: 89  DTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTTKELIAAVLATKGQVHKTYGNFNNEIGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + DF + E+ M   G+I  LT + RP I VIT +  AH+   S  E IA A
Sbjct: 149 PKTLLELGAEHDFAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLSSEEAIAEA 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+   +       LNYD     +  AK    G    Y F      D Q +        
Sbjct: 209 KCELLAEMPNDSVAILNYDSPLL-METAKKFWQGKVISYGF---SGGDIQGK-------- 256

Query: 270 SWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                 +  +++EV   G+     G H A N L  L +  +L  D  +    + V  P  
Sbjct: 257 -----LIDNETVEVAGIGLPLPLPGRHNATNFLAALAVAKVLEIDWQSLQAGVIVNMPN- 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +R+    +     ++DE+YNA P +M AA+ +L+ I      R+IAVLG M E+GE 
Sbjct: 311 GRSQRFTLPND---VIILDETYNAAPEAMLAALQLLADIPGK---RKIAVLGVMKELGER 364

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---------LPRSIHVHYSETMDGLFL 435
           SQ  H  + E++              ++  KDA         +P      +++ +  L  
Sbjct: 365 SQQLHQQVGEMVQ----KLNLDGLLLLVDSKDAEFIANSAKGIPCECFATHADLIARLKT 420

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           F+Q+    GD ++ K+++S G  R++N L  E 
Sbjct: 421 FMQA----GDRLLFKAAHSVGLDRVVNQLRLEL 449


>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
 gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 212/449 (47%), Gaps = 39/449 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85
           IS+DSR+++  + F  I G   D H FI  A+  G G V V T     I  +   +    
Sbjct: 29  ISLDSRNMSGLDLFVPIVGEKVDAHRFICQAI--GNGAVAVFTSAHRDISQVEKAIADWE 86

Query: 86  --------------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                           V+D   AL  L    R R    ++ ITGSVGKTTT+EM+  ALS
Sbjct: 87  SRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPLVGITGSVGKTTTREMIAAALS 146

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +    Y   G+ N+ +GVP+T++ +P + +  + ELGMS  GE+  +  +     AV+T 
Sbjct: 147 AGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVIELGMSEPGEMEKIARVACVDSAVVTN 206

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I  AH+      E I   K  I +G+   G +F+N DD     ++A+    G + I  +G
Sbjct: 207 IGIAHIEQLGSQENILREKLHIQDGMNPEGILFVNGDDPLLADIQAE----GGRRIIRYG 262

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S   +++    +   E   +   + G K   V    +G HM  N +  L + +    D+
Sbjct: 263 MSAGCEYRAEDVR-LDEGYPVFTAVHGEKRTPVRLQVMGTHMVGNAMAALAVAAEYGVDM 321

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGE 368
           + A + L  F   +GR + +      GF   T+ID+SYNA+P SMKA + VLS + P   
Sbjct: 322 EEAARKLGEFGGYKGRQQIH------GFQGMTIIDDSYNASPVSMKAGLEVLSSMKPG-- 373

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--- 425
            R+IAVL DM E+G  +  FH ++   ++ + +  V L G    A+ + L  +       
Sbjct: 374 ARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLLYGELAAAIGEGLREAGGQSPFL 433

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              +++ +  +++     GD ++ K SNS
Sbjct: 434 LCGSLEQVKEWLKRETKSGDCILFKGSNS 462


>gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 456

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 221/470 (47%), Gaps = 32/470 (6%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF+++   ++  + +   P      +  DSR I   + FF +KG   DGH FI+ A + G
Sbjct: 4   TFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VD+VL AL +LA     + K  + A+TGS GKTTTK+
Sbjct: 63  AAATLSEKELD------DYPYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + ++T I  AHL  F    EIA  K +I +G++    + +  D    + L ++ +    
Sbjct: 177 KVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGMKDGTLLVVPADKIINDFLPSQLN---- 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG  +  D  L K ++  +    E      ++++     G + A N ++   +  
Sbjct: 233 --VVRFGPDE--DIFLTKLEERKDSLSFETNFLDNAIDL--PVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D   KA +       R + ++ A N     ++ + YNANP +M+  +   S I 
Sbjct: 287 KEGVTQDKIQKAFATLELTRNRTE-WKKAKNGA--DILSDVYNANPTAMRLILETFSTIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPR 420
            + +GR++AVL DM E+G  S+  H  +   L+   +S ++L G  + AL    K+  P 
Sbjct: 344 FNEKGRKLAVLADMKELGVDSKQMHSAMITSLNPEILSEIFLYGEDMAALFAYAKEIFPP 403

Query: 421 SIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               HY       +    L   ++ +L   D +++K SNS     L+  L
Sbjct: 404 G-KAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEKL 452


>gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 456

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 198/397 (49%), Gaps = 30/397 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q +  + IG   Q  V  I+ D+R       FFA+KG H+D H ++  AV++GA
Sbjct: 5   TTQQLAQILNANLIGD-GQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVEQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV      +  ++S P   V D   AL +LA   R +    I+A+TGS GKTT KEM
Sbjct: 64  TALVVQK----ANTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKTTVKEM 119

Query: 126 LTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               L         +    G++NN IGVPLTL R+     F + ELG +H GEI + THL
Sbjct: 120 TASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEIDYTTHL 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A++  +A AHL  F  IE +A AK EI+ GL   G   +N + ++ EL + +   
Sbjct: 180 AQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTPNGMAIINSEHNYIELWQKE--- 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +G   I  F      D++    +     S +M V  +G S+E+    +G H  +N L   
Sbjct: 237 IGSHAIQYF---NGGDYKAENVEHSPNGSTFMLVSPKG-SIEINLPYLGEHNVKNALAAT 292

Query: 301 GI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            +   V    ADV   ++     H  + +G+ +   +N+    L+D++YNAN  S++AAI
Sbjct: 293 ALAMNVGASLADVKAGLE-----HRSQVKGRLFPIQVNENLL-LLDDTYNANVDSLQAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            VL       +  RI ++GDM E+GE S   H  + E
Sbjct: 347 DVLKGY----DAFRILLVGDMKELGEDSLKCHQQVGE 379


>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
          Length = 509

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/446 (31%), Positives = 221/446 (49%), Gaps = 25/446 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++IDSR+++  + F A+ G   DGHD+   A  +GA LV+   ++        +P   V 
Sbjct: 71  VTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQGAVLVLSQKNIKG------VPCVVVA 124

Query: 90  DVLGALNKLAVA--ARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           D   AL  LA A  ARLR K    +I +TGS GKTTTK+++   L++        GS NN
Sbjct: 125 DTQRALGDLARAHLARLREKGHIRVIGVTGSAGKTTTKDLMGQMLATYGNVVVPAGSLNN 184

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G+PLT+ +     DF + E+G S +G++ +LT +    IAV+  +  AHL  F   E 
Sbjct: 185 ELGLPLTVLKADETTDFLVTEMGASAVGDLHYLTSIAPLDIAVVLIVGLAHLGGFGSAEL 244

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWK 264
           +A AK+E+  GL   G   LN DD     +K  +H      + +FG  + AD + +    
Sbjct: 245 VAQAKSELVTGLLPQGIAVLNADDHRVIAMKELAHG----QVRTFGSVRGADMRAINART 300

Query: 265 QCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             + ++  +V+   G +  V    +G H   N L  L  V+ L   +D A  ALS     
Sbjct: 301 DAAGRAHFDVETTAGDTASVTLTLVGEHHVTNALAALTAVTALGMPLDQAAVALSAARAT 360

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMG 382
                R          T+ID+SYNANP SM+AA+  L+ ++  G  RR +AVLG+M E+G
Sbjct: 361 S--PHRMDVVDRPDGVTIIDDSYNANPDSMRAALRALATVA--GRQRRTVAVLGEMRELG 416

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQ 438
             S+++H D+  ++   NIS + + G     + D   +       V     ++     + 
Sbjct: 417 PQSRTYHDDIGRLVVRLNISRLIVVGQGAQGIADGALQEGSWGDEVVEVADLNAAHAALN 476

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
             L   DVV++K+S+  G ++L + L
Sbjct: 477 DYLQPNDVVLIKASHGSGLWQLADEL 502


>gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
 gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
          Length = 471

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 187/385 (48%), Gaps = 17/385 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88
           +  D+R++A  + F A+KG  +D ++F+  A  +GA   + +  +  A +  L +P    
Sbjct: 28  VHTDTRTLAEGDLFVALKGERFDANEFLADAKARGAVAAIAHGGLEAAGLAGLEVP---- 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNH 146
            D L AL  L    R +    +IA+TGS GKTT  +M+   L + +  +  A  G++NN 
Sbjct: 84  -DSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVTQMIAAVLVAFRGDRALATAGNFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       + ELGM+H GEI  L  + RP +A++      HL   + +E +
Sbjct: 143 IGVPLTLLRLRAKHQHAVVELGMNHPGEIARLAAIARPTVALVNNAQREHLEFMATVEAV 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWK 264
           A     +F  + + GT    + D F  L    +H    +   +FG+ ++AD  L   +W+
Sbjct: 203 ALENGAVFSFVPEDGTAVFPHGDEFAPLWNDMAHDGATRRCMTFGEHEDADISLVAAEWQ 262

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           Q + Q  +   L     +   H  G H   N L             +T  + LS F P +
Sbjct: 263 QGAWQVRIRTPL--GDFDAQLHIAGRHNVVNALAATACALATGIPPETIARGLSAFEPVK 320

Query: 325 GRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           GR K     L  G   TL+D+SYNANP S++AAI VL+ +     G R+ VLGDM E+G 
Sbjct: 321 GRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVLAALP----GPRLLVLGDMGEVGN 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            +  FH ++ +      I  V+  G
Sbjct: 377 RAPEFHAEVGDWARQRGIEAVYALG 401


>gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 455

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 213/448 (47%), Gaps = 27/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           +  ++ DSR I+    F  IKG   DGHDF+  A++ GA   +         G+ + P  
Sbjct: 24  ITSVAFDSRKISQGALFIPIKG-ERDGHDFVGSAIEAGASATLWEA------GNPNKPEG 76

Query: 85  --VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  V D L A+  LA     +   T+++ITGS GKTTTK+M+   L+     Y    +
Sbjct: 77  IAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAKRFNVYKTQAN 136

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVP+T+  M    +  + E+GM   G++  L+ L RP +AVIT I  AH+  F  
Sbjct: 137 FNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGS 196

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            ++IA AK EI + L++ G    N D    E L A+  A   +   +FG + +       
Sbjct: 197 RDKIADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLPQDKSTFGFADSDSIHASD 252

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFH 321
            +     S+ ++   G   E     IG H   N +  + +V     + D  I A L+ F 
Sbjct: 253 LRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFV 309

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +  +    +   + I   YN+NP ++KA  +   Q+    +GRRIAVL DM E+
Sbjct: 310 PTANRMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLEL 366

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLF 436
           G  S   H  LA  L    I+ ++L G  +  L  AL      +++H +  + M  L   
Sbjct: 367 GSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEMSHLIDD 426

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++S +   D+V++K S+     R+++ L
Sbjct: 427 LKSDIHSQDIVLLKGSHGMHLERVLDRL 454


>gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           CECT 5716]
          Length = 459

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 25/466 (5%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + G
Sbjct: 4   SLAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK+
Sbjct: 63  AKATLWAKDHPYDPAD-GYPRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTKD 121

Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   L++   + KTYA   ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L
Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+    LL+ ++  
Sbjct: 179 TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAK 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L  +T  +FG+  + D          +     V      +  +   +G +   N L  + 
Sbjct: 236 LSQQT-KTFGRQLDDDLYATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMT 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  ++        +AL      E R +    A  +    ++ + YN+NP ++K  ++ L+
Sbjct: 294 VGKLMHVTPANMKQALQNVELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLA 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I     G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++
Sbjct: 351 TIPV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKA 408

Query: 422 ------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 +H + +     L   +Q+SL  GDVV++K+S+     +++
Sbjct: 409 GYPAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVL 454


>gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 481

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 229/478 (47%), Gaps = 39/478 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +T   +   + G   GI PQ  ++ G+  DSR ++P + F A +G   +G +F   A+  
Sbjct: 4   FTAQQIADIVGGELYGIDPQTTLSAGVETDSREVSPGDIFVARRGETTNGIEFAPSAIAA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA   +V  + V ++G  ++P   V D   AL KLA A+   LR   T+IAITGS GKT+
Sbjct: 64  GA--AIVIAEAVPTVGDDTLPSCVVTDATVALGKLASASVEALRETMTVIAITGSSGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            K+++++ L+   +T     SYNN +GVPLT  R   +  F + E+G   +G + +LT L
Sbjct: 122 VKDLVSVLLAGEGETVYPPNSYNNEVGVPLTALRAGEETRFLVLEMGARSIGNLAYLTSL 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RP IAV   +  AH   F  I+  A AKAE+ E L++ G   LN DD     ++    A
Sbjct: 182 IRPDIAVELNVGAAHSGVFGSIDNTARAKAELVESLQEPGWAVLNADDPRVRDMQ-NVLA 240

Query: 242 LGIKTIY-SFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
            G+ T++ S G+    D  +  W        + +S   + L G+    V    +G H   
Sbjct: 241 QGVNTMWFSEGEPTRPDTTV--WASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHVS 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352
           N L    +  +      + +  L+      G   R+R  L  +    T+I+++YNANP S
Sbjct: 299 NALAAATVAHLCGVTARSIVTTLATA----GAASRWRMELVDSPNGVTVINDAYNANPDS 354

Query: 353 MKAAISVLSQISPHGEG-------RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           M+AA+  L+++   G G       R +AVLG+M E+G+ S   H  +  ++   NIS   
Sbjct: 355 MRAALITLAEM---GRGDDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTI 411

Query: 406 LSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             G      +    L+ +        + E +      +QS L  GD+V+ KSS   G 
Sbjct: 412 AVGEGARPIYQAANLEGSWGN--EAAWVENISEARDLLQSELQPGDIVLFKSSRDAGL 467


>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella longbeachae NSW150]
 gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella longbeachae NSW150]
          Length = 441

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 210/445 (47%), Gaps = 29/445 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI IDSR +     F AI+G  +DGHDFI  A  +GA   VV+      +  + IP F
Sbjct: 20  LTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSH----RVEGVHIPQF 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D + AL K+A A R      +IA+TGS GKTTTKEM+   L S   +++  G+ NNH
Sbjct: 76  VVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAILPS--PSHSTKGNLNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG PL++ ++     + +FELG +H GEI     +V P + +I  IAPAH+  F  I+ +
Sbjct: 134 IGAPLSVFQLNSQHRYAVFELGANHPGEIAHTVAIVHPDVTLINNIAPAHVEGFGSIDGV 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI +GL   GT  +N DD++          L  K +  F     AD   +  +  
Sbjct: 194 ARAKGEIHQGLSSAGTAIVNDDDAYAHFW---DELLLDKKVLRFSIEHPADVYAQDVQLD 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           S+       +       +H  + G H  +N L        +        + L++F   +G
Sbjct: 251 SQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGLSAKEIQQGLNLFSGVKG 310

Query: 326 R-----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           R     GK      NQ   T+ID++YNAN  S+  A+ VL++      G++I V GDM E
Sbjct: 311 RLTVLTGK------NQS--TVIDDTYNANLRSVLVALEVLAE----HPGKKIFVFGDMGE 358

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  +   H ++        I  +   G       +A    +   Y  + + L   + + 
Sbjct: 359 LGVWATQHHQEVGIAARRLGIDQLLCCGSKSRLAAEAF--GVGGEYFTSQEQLVQNLVAK 416

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           L    VV+VK S S    ++++ L+
Sbjct: 417 LSADTVVLVKGSRSSAMEKIVHQLV 441


>gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
 gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
          Length = 454

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 185/365 (50%), Gaps = 27/365 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL KLA A R      +  ITGS GKTT KEML   L      +   A  G+
Sbjct: 81  --VDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT +  P++A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQL 260
           G+ +IA AK+EI+EGL   G   +  +D+     +A +  L I+T   + G     + +L
Sbjct: 199 GVGDIAKAKSEIYEGLLSDGVALIPCEDANIATFEAATVQLNIQTFGIASGDVHAENIEL 258

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +    C+     ++    + + VV    G H   N +    +       +      L  F
Sbjct: 259 KPL-SCT----FDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNF 313

Query: 321 HPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              +G     R  + QG    TLID++YNANP SMKAAI VL+ +       RI V+GDM
Sbjct: 314 SNIKG-----RLNIKQGIKGATLIDDTYNANPDSMKAAIDVLAAMP----APRIFVMGDM 364

Query: 379 CEMGE 383
            E+GE
Sbjct: 365 GELGE 369


>gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 427

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 196/393 (49%), Gaps = 36/393 (9%)

Query: 26  FVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLS 82
           FV+  SI  D+R I     FFA+KG ++DG+ +   A++KGA   V+ N D+      L 
Sbjct: 11  FVDSSSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRKIL- 69

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                V +VL  L  LA   R + K  I+AITGS GKTTTK++++  LS   K  A  G+
Sbjct: 70  -----VKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGN 124

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NNHIGVPLTL     ++D GI E+G +H  EI  L  +  P+   IT    AHL  F G
Sbjct: 125 LNNHIGVPLTLLSFTAELDLGIIEIGANHQKEIESLCKIAEPNYGYITNFGKAHLEGFGG 184

Query: 203 IEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           +E +   K+E+++ L    G IF N DD   ++ KA ++       YS G+   +D ++ 
Sbjct: 185 VEGVIKGKSELYDYLIHHDGLIFFNRDDD-IQVKKAVNYK-----NYSIGEKPLSDCRV- 237

Query: 262 KWKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                   ++M+    V+L+   +++    IG +  +N+   +G+        D   +A+
Sbjct: 238 --------TFMDANPFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKDEIKEAI 289

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F  +E R +     + +    ++ ++YNANP SMKAA+    ++S   +     +LGD
Sbjct: 290 ENFEAEEMRSQ----VIEKNDLKILLDAYNANPTSMKAALESFKKMSSQSQ---TVILGD 342

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           M E+GE +   H  + +     N   +   G H
Sbjct: 343 MFEIGETTLEEHRQILKTCETLNFDSILACGEH 375


>gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Shewanella amazonensis SB2B]
 gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella amazonensis SB2B]
          Length = 455

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 210/442 (47%), Gaps = 24/442 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +  DSR +     F A+KG  +DGH+F   A   GA  ++V  ++      L++P  
Sbjct: 24  VSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVEREL-----PLALPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A+ ++    R       +A+TGS GKT+ KEM+   LS         G++NN 
Sbjct: 79  VVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATVLSQHHSVLFTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    ++G+FELG +H GEI + + LVRP ++++  +  AHL  F     +
Sbjct: 139 IGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSSLVRPSVSLVNNVGSAHLEGFGSEAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK+EI+  L + G   +N DD + E +  K   L  K + +FG    A+   R+    
Sbjct: 199 AEAKSEIYLHLAQDGVGIVNLDDRYAETMLNK---LKGKRVLTFGLGAGAEITAREVTAD 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +   +      G     V   + G H   N L T  I   L   +      L+   P +G
Sbjct: 256 AFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALATAAICIALGLPLQEIAAGLAKLAPVKG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    +     G   L+D+SYNANP S+ AAI  L +IS +    R  VLGD+ E+G+ +
Sbjct: 316 RMMPRQL----GRLLLVDDSYNANPNSVGAAIDWLKEISTN----RTLVLGDLGELGDNA 367

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVD 443
              H +L +      +  ++  G    +L     ++    + E +D L   L    + V+
Sbjct: 368 ALLHFELGQKAKEAGLDSLFCLG----SLSRHASQAFGSKHFEELDALVSELINYINGVE 423

Query: 444 GDV-VVVKSSNSCGFYRLINLL 464
           GDV ++VK S S    R++  L
Sbjct: 424 GDVTLLVKGSRSAAMERVVEAL 445


>gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 452

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           I+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF        S  + 
Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +Q    S++V+    G H   N L    +   + A +      L+      GR    +
Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+ 
Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374

Query: 392 LAEVLSLYNISHVWLSG 408
           + E      I  V  +G
Sbjct: 375 VGEAAKAAGIDRVLSTG 391


>gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae T3T1]
          Length = 456

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 191/383 (49%), Gaps = 37/383 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGS 80
           Q  V  I+ D+R       FFA+KG H+D H ++  AV++GA  +VV   NT+       
Sbjct: 22  QAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVEQGAAALVVQQANTE------- 74

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           ++ P   V D   AL +LA   R +     +A+TGS GKTT KEM    L         +
Sbjct: 75  IATPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKTTVKEMTASILQQTAGNPEAV 134

Query: 141 ----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G++NN IGVPLTL R+     F + ELG +H GEI + THL +P  A++  +A AH
Sbjct: 135 LFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEIDYTTHLAQPEAALVNNVAAAH 194

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSK 254
           L  F  IE +A AK EI+ GL + G   +N + ++ EL + +  SHA+     Y  G+  
Sbjct: 195 LEGFGSIEGVARAKGEIYRGLTQNGVAIINSEHNYIELWQKEIGSHAIQ----YFNGR-- 248

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVD 311
             D++    K     S   +     S+E+    +G H  +N L    +   V    ADV 
Sbjct: 249 --DYKAENVKHSPNGSTFTLVSPKGSIEINLPYLGEHNVKNALAATALAMNVGASLADVK 306

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             ++     H  + +G+ +   +N+    L+D++YNAN  S++AAI VL       +  R
Sbjct: 307 AGLE-----HRSQVKGRLFPIQVNENLL-LLDDTYNANVDSLQAAIDVLKGY----DAFR 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
           I ++GDM E+GE S   H  + E
Sbjct: 357 ILLVGDMKELGEDSLKCHQQVGE 379


>gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 461

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 200/413 (48%), Gaps = 27/413 (6%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   +S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + G
Sbjct: 4   TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQG-ERDGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A         VA+    +I   P   V++ L A  KLA     + +  +IA+TGS GKT+
Sbjct: 63  A---------VATFSERAISGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ +
Sbjct: 114 TKDMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRI 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIAV+T I  AHL+ F   E+IA  K +I +G++  G I +   D   +     S  
Sbjct: 174 ARPHIAVLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNG-ILIAPGDPILDPYLPDS-- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  +  +   K+C +       +  + + +     G + A N ++   
Sbjct: 231 ---QMVIRFGDHQ--ELVVEDIKECKDSLTFRTNVLPRPVTIPL--TGKYNATNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+AL        R +  + A       L+ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVPDEDIIEALEAVKLTRHRTEWLKAA---NGADLLADVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            I  +  G++IAVL DM E+G  S + H  +   L    I  +   G  + AL
Sbjct: 341 AIPANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRIDQLVFYGDDIQAL 393


>gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
 gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
          Length = 478

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 213/450 (47%), Gaps = 31/450 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV- 88
           + IDSR +     F A  G   DG+ +I  A+  GA +V  + +   +    +  V    
Sbjct: 29  VEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDATL 88

Query: 89  -----DDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                DD    L +LA A R L    T++A+TGSVGKTTTK+ML   +++ ++ +A  G+
Sbjct: 89  LRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDMLRAGIATQRRVHATAGN 148

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IG+P+T+   P D +  + E GM+H GEI  LT   RP IAVIT +  +H+     
Sbjct: 149 HNNLIGLPMTILSAPKDAEVLVCECGMNHKGEILRLTRCCRPTIAVITNVGTSHIGLLGS 208

Query: 203 IEEIASAKAEIFEGLEKTG----TIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNAD 257
            E IA AKAEI EG+E  G    T+ L     F   +  K +   GI  +     S   D
Sbjct: 209 RENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSEKFARPKGIDVVCV--GSHAGD 266

Query: 258 FQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
               +     E+S      V   G    V     G     + LM L  +++L  D D A+
Sbjct: 267 ILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSDALMALEAITLLGLDRDMAL 326

Query: 315 KALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            A++   P      R R ++        +ID+SYNA+P+SM AA+ VLS++     GRRI
Sbjct: 327 DAIATMPP-----TRMRLSVLHAVCGARIIDDSYNASPSSMAAALDVLSRMPTR--GRRI 379

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----HVHYS 427
           A+LG++ E+G+  +  H  +   ++   I  V   G           +++      +   
Sbjct: 380 AILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFVGKDAAREMAEAAKTMGLSEDAIELV 439

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           E+++ +   I   L D D V+VK+S + G 
Sbjct: 440 ESVEDVMKIIPPILKDTDTVLVKASRAAGL 469


>gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1057]
          Length = 456

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 213/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I P + F  +KG   DGHDFI  A   GA   +  +D   + G    P   VDDVL
Sbjct: 32  DSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGAAATL--SDHPVAEG----PYLLVDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A   LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L   ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADYK------LVRFG--PDADIFLTCLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +     K +++   G  Y+    M+     +    ++V  A +A S       R + ++ 
Sbjct: 257 DCNFLEKRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
          Length = 455

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 22/434 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR I P + F A++G  +DGHDF+  A+  GA   +V+ D        +  +  VD
Sbjct: 32  LTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAGHLLQVD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A  ++A   R R    +I ITGSVGKTTTKE++   L+          +YNN IGV
Sbjct: 92  NTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLKPEANYNNEIGV 151

Query: 150 PLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P T+ ++  D  +  + E+GM   G+I  L  + +P+IAVIT +  AH+      + IA 
Sbjct: 152 PKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAE 211

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+   L  TG   LN D+     L A +  L +    ++G  +N D Q     Q  +
Sbjct: 212 AKCELLAQLSGTGLAILNADN---HRLIATAQRLNLPRCRTYGL-QNGDLQ----GQLID 263

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              + V+ Q   + +     G H A N L  L I   L  D + A + LSV  P +GR +
Sbjct: 264 LETLVVEGQRFRLPLP----GAHNALNFLAGLAIAQELGLDWE-AFRDLSVTLP-QGRAR 317

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R   + +     L+DE+YNA   SM AA+ +L+        RRIAVLG M E+G+ S+++
Sbjct: 318 RIELSPD---IVLLDETYNAGLESMLAALQLLADTPGQ---RRIAVLGTMKELGDFSETY 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  + E  +   +  + +       A   A   +I        + L   ++ S+  GD +
Sbjct: 372 HRQVGEKAAALGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSELRQSVQTGDRL 431

Query: 448 VVKSSNSCGFYRLI 461
           + K+S S    R++
Sbjct: 432 LFKASRSVALDRIL 445


>gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 422

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 203/386 (52%), Gaps = 26/386 (6%)

Query: 26  FVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           F+N  GIS D+R I     FFA+KG +++G+ +   A+ +GA  VV++ +         +
Sbjct: 7   FLNSTGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEEQFKKDDRYIL 66

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VDDVL  L +LA   R      II++TGS GKTTTKE++   L+   KT A +G+ 
Sbjct: 67  ----VDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNL 122

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPLTL  M  D + GI E+G +H+GEI  L ++ +P    IT    AHL  F   
Sbjct: 123 NNHIGVPLTLLSMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYITNFGKAHLEGFGSE 182

Query: 204 EEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           E +   K+E+++ L+    I F+N +D+     K      G+KT ++FG  K +D     
Sbjct: 183 EGVVIGKSELYKHLKSHDKIVFVNSNDA-----KQVDLTKGMKT-FTFG-LKQSDV---- 231

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           W      + + V++   ++ +  + IG + + N+   + I           ++A+  + P
Sbjct: 232 WVSFKNVNPL-VEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDKHIVEAVENYVP 290

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +     + +   T++ ++YNANP+SMK A+  L  ++   +  + A+LGDM E+G
Sbjct: 291 SNNRSQ----IIKKDNLTILLDAYNANPSSMKVALENLQALN---DTPKYAILGDMFELG 343

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
             ++  H+ +A++ +  ++  V L G
Sbjct: 344 ASAKKEHMSIAKLAASIHLDGVLLVG 369


>gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9]
 gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9]
          Length = 452

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 196/398 (49%), Gaps = 28/398 (7%)

Query: 4   LWTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T H++ +A+    QG + G         +  DSR+I   + F A+KG  +D HDF+  
Sbjct: 1   MLTLHEVAEALFAVRQGDNTGFTR------VVTDSRAIRAGDLFVALKGERFDAHDFVAD 54

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            + +GA   VV  D          P+  V D   AL +LA   R R    +  ITGS GK
Sbjct: 55  VLARGAAGAVVRCDFDLP----GAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGK 110

Query: 120 TTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           TT KEML   L+     +   A  G++NN IG+PLTL  +       + E+GM+H GE+ 
Sbjct: 111 TTVKEMLRGMLAQWLGDEAVLATGGNFNNDIGMPLTLLGLRDTHRAAVIEMGMNHAGELT 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +L+ L RP +A++     AH+ +F  +E IA AKAEIF GL   G   +N DD   +L  
Sbjct: 171 YLSGLARPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAGLAADGVAVINRDDPNRDLFV 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +     + I  FG +   D      +  ++ S + +        V+    G HM  N 
Sbjct: 231 AAAAG---RRIVEFGLAAG-DVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    + S +   +   +  L  F    GR   +R A++    T+ID++YNANP S++AA
Sbjct: 287 LAACAVASAMGVPLPAMVAGLQAFAGVPGR-LAFRRAVSG--LTVIDDTYNANPDSVRAA 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           I+VL+  S    GRR  V GD+ E+GE + + H ++ +
Sbjct: 344 IAVLAARS----GRRWLVFGDLGELGEGAPALHAEIGQ 377


>gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
 gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
          Length = 470

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 219/475 (46%), Gaps = 33/475 (6%)

Query: 10  LLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +  A+ G   GI P   V G ++ DSR +     F A+ G   DGHD++    + GA  V
Sbjct: 9   IADAVGGELAGIDPAAVVTGAVAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGA-TV 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
            + T  V        P   V D   AL +LA  V A+L  + T+I +TGS GKT+TK+++
Sbjct: 68  SLTTRPVDGC-----PCIVVADTQVALGELARYVVAQL-PELTVIGLTGSQGKTSTKDLI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              ++    T A  GS+NN IG PLT  +   D  + + E+G  HLG+I +L  +  P +
Sbjct: 122 AQLVAPYGPTVAPTGSFNNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYLCRITPPKV 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +  +H+  F   + IA AK E+   +   GT  LN DD     + +++     +T
Sbjct: 182 GLVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGTAVLNADDPRVAAMASRTE----QT 237

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN------MLMT 299
           I +FG++  AD +    +   E +    +   G+S  V    IG H   N        + 
Sbjct: 238 IRTFGEAPEADVRATDLEVDGEGRPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G+     AD   A   +S          R          T+I+++YNANP S++AA+  
Sbjct: 298 VGLTPEQVADGLNAAARVSQ--------ARMEVVERPDGVTVINDAYNANPDSVRAALKA 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA 417
           L  I    E R  AVLG+M E+G+ S + H  +  +    +++ +     G   + L  +
Sbjct: 350 LVAIGRAREARTWAVLGEMLELGDSSATEHDAVGRLAVRLDVNRLLAVGEGAKPIHLGAS 409

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           L  S      Y  T+      ++  L  GDVV+VKSS +     L + LLE  PA
Sbjct: 410 LEGSWGNESAYVATIAEALELLRGELRSGDVVLVKSSKAANLRSLADALLETAPA 464


>gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 451

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 209/397 (52%), Gaps = 44/397 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     +GH+++  A+  GA         VAS+   S    
Sbjct: 24  IHGVCIDSKNMKEGNLFVPII-RMKNGHEYVKEAMDNGA---------VASLWKKSYGTP 73

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 74  PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P +AVIT I  +HL  
Sbjct: 134 KGNFNSQIGLPLTILEMERDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 193

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---- 255
               EEIA AK EI +GL   G    N D+    LL    + L I++    GK  N    
Sbjct: 194 LGSREEIAKAKFEIIDGLNDDGLFLYNGDEP---LLSQNINMLSIESKSFGGKYTNDLFP 250

Query: 256 ADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            + QL ++    K  + +   ++ L GK   +++  +G  + Q          + T  + 
Sbjct: 251 TNVQLDEYGVHFKLNNTKIQYDIPLHGKH-NILNAIVGIAVGQ-------FYKVSTEKIQ 302

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A++ +++         R++    +  FT+I++++NA+P+SMKAAI  L +++ +   ++
Sbjct: 303 EALQQINITQ------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KKK 354

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + V+GDM E+G+  +++H ++ ++L+  +I +V+  G
Sbjct: 355 MIVIGDMLELGKKGETYHREIGKMLNEKSIQYVFTYG 391


>gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
 gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
          Length = 442

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 214/454 (47%), Gaps = 45/454 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  DSR + P   F AI+G  +DGHDFI  A  +GA   VV      ++  ++IP F
Sbjct: 20  ITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVVKY----AVDGITIPQF 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL K+A A R      +IA+TGS GKTTTKEM+   L     ++A  G+ NNH
Sbjct: 76  VVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAILPV--PSHATKGNLNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG PL++ ++     + +FELG +H GEI     +V P + +IT IAPAH+  F  I+ +
Sbjct: 134 IGAPLSVLQLTSQHRYAVFELGANHPGEISHTVAIVHPDVTLITNIAPAHIEGFGSIDGV 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIK---TIYSFGKSKNADF 258
           A AK EI +GL  +G   +N DD++       L+  K+    I+    +Y+       D 
Sbjct: 194 ARAKGEIHQGLSTSGIAVVNDDDAYAHFWDDILVDKKTLRFSIEHPAEVYA------QDI 247

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            L  +  C++ S +   L    ++      G H  +N L        +   +      L+
Sbjct: 248 HLDAYG-CAQFSLI---LPNGRIDTQLQVPGLHNVRNALAAAACCHAVGVAIKDIQHGLN 303

Query: 319 VFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            F   +GR     GK      NQ   T+ID++YNAN  S+  A+ VL++      G++I 
Sbjct: 304 NFGGVKGRLMILSGK------NQS--TVIDDTYNANLRSVLVALEVLAE----RPGKKIF 351

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDG 432
           V GDM E+G  +   H ++        I  +   G F  LA         H    E +  
Sbjct: 352 VFGDMGELGAWATQHHQEVGLAARRLGIDLLLSCGSFSKLATDSFGAGGEHFTNQELLAQ 411

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +     L    VV+VK S S    +++N LL 
Sbjct: 412 NLI---EKLSPDTVVLVKGSRSSAMEKIVNKLLN 442


>gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
 gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
          Length = 452

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 203/444 (45%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN ++ D+R+I P   F A++G  +D HDF+  A   GA   +V+ +  +   ++     
Sbjct: 21  VNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVDREQDSFESAVR---- 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    L +LA     +     +A+TG+ GKTT KEM    L     T A  G++NN 
Sbjct: 77  -VADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMAAAMLGD--GTLATHGNFNND 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTL R+  +  F + ELG +  GEI + + L RP + ++T +  AHL  F  ++ I
Sbjct: 134 VGVPLTLLRLRAEHRFAVIELGANAPGEIAWTSSLTRPQVVLVTNVTGAHLEGFGSMQGI 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQ 265
           A AKAEIF G    G   +N DDSF +    K+ A G+  +  S  +S      L     
Sbjct: 194 ADAKAEIFGGCTPGGQAIINNDDSFADFFAEKARAAGLTVVRVSMDESTRTGADLYAENI 253

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +   E  LQ     V     G H   N LM    V  L  ++   +  L+   P  G
Sbjct: 254 ALHRDRAEFVLQPLGEAVTVPLPGAHQVSNALMACAAVRALGVNLPQVLPRLAALKPVPG 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
           R    + A   G   ++D++YNANP S++AAI  L +Q +P      + VLG M E+G  
Sbjct: 314 R-MHIQAA---GAGAVVDDTYNANPGSVRAAIDWLAAQPAPQ-----MLVLGAMGELGPQ 364

Query: 385 SQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + S   +L E      +S  V ++G    A        I   Y +       +    L  
Sbjct: 365 ADSLVEELGEYARQAGLSGLVAMTGAAAAARGYGEAAKIAEDYQQAAS----WSAPVLAQ 420

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
           G  V+VK S S G   ++  L +E
Sbjct: 421 GGTVLVKGSRSAGMEAVVQRLTQE 444


>gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
          Length = 476

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 218/469 (46%), Gaps = 40/469 (8%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V G +  DSR + P   F A+ G H DGHDF   AV            ++A+    
Sbjct: 22  PGHVVTGPVVTDSREVEPGGLFVALPGEHVDGHDFAAGAVAA------GAALVLAARALP 75

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALS 131
            +P   V DV  AL  LA A  ARLR  AT        +I +TGSVGKTTTK++L     
Sbjct: 76  GLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKDVLAQLCG 135

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +   T A + S+NN IG+PLT+ R      F + E+G S  G + +LT +  P +AV+  
Sbjct: 136 AAGPTVAPVRSFNNEIGLPLTVLRADEQTRFLVLEMGASGPGHLTYLTDIAPPDVAVVLV 195

Query: 192 IAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +  AHL  F  GI+ +A AK+EI  GL   G   LN DD     +   +    +     F
Sbjct: 196 VGQAHLGGFGGGIDAVARAKSEIVAGLLPDGVAVLNGDDPRVRAMADVAPGRAVL----F 251

Query: 251 GKSKNADFQLR--KWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGI--- 302
           G + +A+ ++   +       ++  V + G+   + +V    +G H   N L        
Sbjct: 252 GAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHHVHNALAAAAASLQ 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V +   +V   + A     P      R          T++D+SYNANP SM+AA+  L+ 
Sbjct: 312 VGLTLDEVAAGLTAADALSP-----HRMHVVDRADGVTVVDDSYNANPDSMRAALKALAV 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           I+   E R +AVLG+M E+G+  ++ H  +  ++   NI    + G    A++D      
Sbjct: 367 IAGR-ERRSVAVLGEMLELGDEHRTAHDAIGRLVVRLNIGLTVVVGEGARAIRDGANHEG 425

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V   + +D    F+   L  GDVV+VKSS   G +RL + L+E 
Sbjct: 426 SWGDEVVLVDDVDTAAAFLAQELRAGDVVLVKSSYGAGLWRLGDELVER 474


>gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1058]
          Length = 456

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 213/444 (47%), Gaps = 31/444 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR I P + F  +KG   DGHDFI  A   GA   +  +D   + G    P   VDD
Sbjct: 30  EFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGAAATL--SDHPVAEG----PYLLVDD 82

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           VL A   LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P
Sbjct: 83  VLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLP 142

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T+  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K
Sbjct: 143 YTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGK 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +I +GL K G + +  D    E L A         +  FG   +AD  L   ++  +  
Sbjct: 203 MQIADGLRKDGLLIVPADKIVNEFLPADYK------LVRFG--PDADIFLTCLEERKDSL 254

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +     K +++   G  Y+    M+     +    ++V  A +A S       R + +
Sbjct: 255 SFDCNFLEKRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-W 311

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H 
Sbjct: 312 KKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHG 369

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSS 440
            +   L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  
Sbjct: 370 SMITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREK 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L   D +++K SNS    +L+  L
Sbjct: 429 LTPADQILLKGSNSMNLAKLVEDL 452


>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 472

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 205/449 (45%), Gaps = 24/449 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           + IDSR++     F A++G H DGH +I     KGA   +V      S G+ + P     
Sbjct: 33  VVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAWYESEGAPAAPEGCGF 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D +  L +LA   R      +IA+ GS GKTTTKEM+   L +        G+ NN
Sbjct: 93  LVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAVLGTGFTVQTSKGNLNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++       + E+G++H GE+  L  L RP   ++T I   HL     +E 
Sbjct: 153 HLGVPLTLLQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNIGHEHLEFLLNLEG 212

Query: 206 IASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +A+ +  +F  L++  GT F+N DD +      K  A G+   +++G + ++    +   
Sbjct: 213 VAAEETRLFRYLQQHGGTCFVNADDLWL-----KEAAEGLTGSFTYGTADDSQIACQARH 267

Query: 265 QCSEQSW---MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              ++S     E    G S  +  H IG H   N L    + +     ++   K L    
Sbjct: 268 IAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAAVGTYFGLSLEQIKKGLEALR 327

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  G  KR     + G   LI+++YNAN  SM+ AI  L  I     G++IAVLGDM E+
Sbjct: 328 PSPGW-KRLEVQ-DAGGVVLINDTYNANSDSMRLAIDALVDIPC--SGKKIAVLGDMLEL 383

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQ 438
           GE     H      +    I  ++  G H            H HY    + +D L + +Q
Sbjct: 384 GEAGIVEHEKTGRYIQQSPIDLLFTYGRHARLYGIEAGARCHGHYENRQKLLDELKMVVQ 443

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                GD V+ K+S S     ++  L++E
Sbjct: 444 P----GDAVLFKASRSMRLELVVEALIKE 468


>gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 25/466 (5%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + G
Sbjct: 4   SLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK+
Sbjct: 63  AKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKD 121

Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   L++   + KTYA   ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L
Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+    LL+ ++  
Sbjct: 179 TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAK 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L  +T  +FG+  + D          +     V      +  +   +G +   N L  + 
Sbjct: 236 LSQQT-KTFGRQLDDDLYATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMT 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  ++        +AL      E R +    A  +    ++ + YN+NP ++K  ++ L+
Sbjct: 294 VGKLMHVTPANMKQALQNVELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLA 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I     G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++
Sbjct: 351 TIPV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKA 408

Query: 422 ------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 +H + +     L   +Q+SL  GDVV++K+S+     +++
Sbjct: 409 GYPAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVL 454


>gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
 gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
          Length = 539

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 225/477 (47%), Gaps = 41/477 (8%)

Query: 10  LLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           +++A  G +IG+     Q + +  + DSR +     F A  G   DGH FI  A ++GA 
Sbjct: 9   IIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGAT 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKTTT 122
           L +V  +++   G +  P   V DV+ A+  LA  +    R + + T+I ITGS GKTTT
Sbjct: 69  LALVEREVLDEQG-MPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGITGSAGKTTT 127

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L    +    T A +GSYN+ +GVPLT+ R      + + E+G  H+G I +L ++ 
Sbjct: 128 KDLLAAIFAPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVGNIEYLANIA 187

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P    I  +  AH   F G++ I   K E+ EG++ TG++ LN DD    +L+  S ++
Sbjct: 188 HPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDE--RVLRMASRSV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWK------QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMA 293
              T +  G+  +A+ Q  +        + ++    E  L+   G   E+    IG H  
Sbjct: 246 APITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQLIGEHHV 305

Query: 294 QNML--MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            N+L   T+   S ++ +    I           + +  R     G  T+I+++YNANP 
Sbjct: 306 HNLLAAATIAYNSGISGE---KIARALNKAAAASKWRMARTDRADG-VTVINDAYNANPE 361

Query: 352 SMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           SM AA+  L+Q+          PH   R  AVLG M E+G+ S   H  +  ++   NIS
Sbjct: 362 SMAAALRTLAQLGRTVDPATGQPH---RTWAVLGAMLELGDASVEEHDRIGRLVVRMNIS 418

Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +   G     + +A            + +T +     +++ +  GD+V+ KSSN  
Sbjct: 419 KLIAVGDETKPIYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGA 475


>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 192/392 (48%), Gaps = 18/392 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120
            KGA  +V+    V  +    + V    D L AL  LA   R R +   ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPVVLVP---DTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFL 178
           T KEM    L   ++     G+ NN +G+PL+L  +PV+    F + E+GM+  GEI  +
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSL--LPVEHSHRFAVLEMGMNRPGEIARM 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A+
Sbjct: 206 AEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAAR 265

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   G + I ++G+++NA  +    +   E      + +      V    +G H   N L
Sbjct: 266 T---GQQRI-TYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNAL 321

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + +            L+ + P     KR +         LID++YNANP+SM AA+
Sbjct: 322 AAAALATAAGVSPAEIAAGLAAYRPF---AKRMQLLPFIAGLKLIDDTYNANPSSMLAAL 378

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           + +  +    + R +AVLGDM E+GE S + H
Sbjct: 379 ATVHNLRR--QRRVVAVLGDMLELGEQSVAAH 408


>gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 179/366 (48%), Gaps = 19/366 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SIDSR+I     +  I G  +DG  FI      G+   +++ +      S++IP  
Sbjct: 27  IKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLIDKNFKIP-KSINIPYI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL  LA A R      IIAITGS GKTT+K ++   LS   K     G+ NN 
Sbjct: 86  IVDDTQKALRDLARAYRKELDIKIIAITGSNGKTTSKNIIHSVLSEKYKVEKTHGNLNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT+     D D G+ E+G    GEI  LT++ RP +A+IT I  AHL      E I
Sbjct: 146 IGVPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWK 264
           A AK EI EGL+  G    N DD   E+LK    S+ +  KTI SFG     DF++   +
Sbjct: 206 AKAKLEILEGLKDDGIFLYNGDD---EILKKVLPSYEIKQKTI-SFGMGDKVDFKVEAKE 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPK 323
             S  +    + +  S+ +    +G H   N     G +++L   + D +   + V   K
Sbjct: 262 YTSTSTNFSYKDENYSVPL----LGSHQVYN-----GALAVLIGKLFDLSYDQIKVGLSK 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     + +  F ++D++Y +NP S+K  + +   +   G   +I VLGDM E+G+
Sbjct: 313 SSNNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGFLD--GYLNKIVVLGDMLELGD 370

Query: 384 LSQSFH 389
              + H
Sbjct: 371 DELNLH 376


>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
 gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
          Length = 477

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 148/492 (30%), Positives = 224/492 (45%), Gaps = 54/492 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A+ G  I +      +  +IDSR + P   F A+ G   DGH F+  A Q GA
Sbjct: 3   TLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQNGA 62

Query: 66  GLVVVNTDMVASIGSLS----------------IP----VFGVDDVLGALNKLAVAARLR 105
            L +V  D+     +L                 IP       V++ L AL +LA   R R
Sbjct: 63  ILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWRRR 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGSVGK+TTKE++   LS   +T    G+ NN IG+PLTL R+    +  + 
Sbjct: 123 LNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERAVL 182

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G    GEI  L  + +P + VIT I   H       E IA  K+E+ + L   G   L
Sbjct: 183 EMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGGYAIL 242

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----VQLQGKS 280
           N+DD +   +  K+ A     I  +G +  A      W    E   +E     +  + +S
Sbjct: 243 NHDDPWVRWMADKTQA----QILYYGLTPEAHL----WADEIETMGLEGIRFRLHYRRES 294

Query: 281 MEVVHHGIGYHMAQNML--MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQG 337
             V    IG+H  Q  L    +GIV  LT           + H  +    + R  A+   
Sbjct: 295 FSVRVPLIGHHSVQTALRATAVGIVEGLTWG--------EIIHGLQRSPTQLRLVAVRSS 346

Query: 338 FFTLI-DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH----IDL 392
              LI D++YNA+P S  A++ +L ++    +GRRIAVLGDM E+G   QS H    +  
Sbjct: 347 SGALILDDTYNASPESTLASLQILHEM----KGRRIAVLGDMLELGPYEQSGHEKVGVRA 402

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           AEV  +  ++   LS     A ++A  +   + +          ++  L +GDVV++K S
Sbjct: 403 AEVADVL-VAVGELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGDVVLIKGS 461

Query: 453 NSCGFYRLINLL 464
           +     R+++ L
Sbjct: 462 HGLRMDRIVSAL 473


>gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
 gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
          Length = 453

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 209/445 (46%), Gaps = 24/445 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R +     F A++G  +D HD+   AV  GA  ++V+  +      + +P  
Sbjct: 24  ISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNDGAAALLVSKHL-----PIDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM    L          G++NN 
Sbjct: 79  VVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP  A++  +A AHL  F  +E +
Sbjct: 139 IGVPLTLFRLMPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNA--DFQLRKW 263
           A AK EIF GL   G   LN D       +A+ H AL  KT + F     A  DF     
Sbjct: 199 AQAKGEIFSGLPAQGVAILNADSHD----EARWHDALAGKTRWRFSPQARAGVDFYASDV 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   +      + V     G H   N L    +   + A +D     L+     
Sbjct: 255 GISERGTDFVLHTPAGDIAVTLPLPGRHNIANALAAAALSLAVGASLDAVKAGLAQLQAV 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR   +  AL  G   L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+
Sbjct: 315 PGR--LFPIALAPGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELGQ 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSL 441
            +Q+ H  + E     NI  V   G     + DA     H      +      L  Q + 
Sbjct: 368 DAQACHRQVGEAARKANIDKVLSVGVLSALIGDASGTGEHFDNKTALIARLRALVAQHNT 427

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466
           +    V++K S S    ++++ L E
Sbjct: 428 I---TVLIKGSRSAAMEQVVHALQE 449


>gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
 gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
          Length = 433

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 209/437 (47%), Gaps = 28/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R+I+    FFA++G  ++ ++F   A+++GA   +++     +     +    V 
Sbjct: 17  VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIIDDQQYHTDERCIL----VP 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL  LA + R+  +  +I +TGS GKTTTKE++   LS   +T+A  G+ NNHIGV
Sbjct: 73  DVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +  D++  + E+G +H  EI  L  +  P   +IT +  AHL  F G E +   
Sbjct: 133 PLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGLITNVGMAHLDGFGGFEGVKKG 192

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           KAE++  L ++ G  F+N D+ +  L  A +  L     Y   +S      L       E
Sbjct: 193 KAELYAHLKQQQGKAFINNDNPYL-LEMAHTAQLSDIVYYGSERSNTISGALNSTDPFLE 251

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            SW   Q QG    V     G +  +N+L  + I    +   +   K LS + P+  R +
Sbjct: 252 LSW---QKQGSEFSVGTQLTGAYNFENILAAICIGDFFSLTPEQINKGLSGYAPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    T+I + YNANP+SM AA+  +  +       ++ ++GDM E+G  S   
Sbjct: 309 LTKTEHN----TVICDFYNANPSSMNAALKNMDSLHA---ANKVVIIGDMFELGSESAEQ 361

Query: 389 HIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           H+ +  +L   N++   L      FH   +  +       HY E+     +++Q   V  
Sbjct: 362 HLQI--ILQATNMTLDTLIFIGKNFHQAGMGHS------GHYFESPADAAVYLQQQPVKD 413

Query: 445 DVVVVKSSNSCGFYRLI 461
            ++++K S      +L+
Sbjct: 414 SLILLKGSRGMALEQLL 430


>gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
          Length = 463

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 209/447 (46%), Gaps = 29/447 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I   + F  +KG   DGH+FI  A Q GA       ++         P   V+
Sbjct: 29  IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA     + +  +IA+TGS GKT+TK+M+   LS+  KTY   G+YNN IG+
Sbjct: 82  DCLKTFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  AHL  F   ++IA  
Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I +G+   G +    D      L         + +  FG  +  D    +  + S  
Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V     S+ +     G + A N ++   +  +L    +  I AL       G    
Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAVL DM E+G+ S   H
Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440
             L + L+  NI  +   G H+  L     +   +  VHY       +  + +  ++Q+ 
Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKAEQEDQFEAMAQYVQNI 428

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   D +++K S+S    +L++ L+ +
Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455


>gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners
           AB-1]
 gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
 gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
          Length = 455

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D  
Sbjct: 13  GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 455

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 21/457 (4%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  + +     V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D  
Sbjct: 13  GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS    
Sbjct: 72  NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P + VIT I  A
Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254
           H+  F   ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    
Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313
           N+   +      S        +    ++     IG H   N L  + +       DV+ A
Sbjct: 243 NSTDTIYATNFNSYMHHASFAINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIA
Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428
           VLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  +
Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 419 HMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
          Length = 457

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  VV+  +      S+SIP  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGAVAVVIQQEN----SSISIPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L     +   +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAASSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDVWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSSQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +  RI  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFRILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + +   N+  V   G     + DA+         + +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVKSSNLDLVCSYGNESAVISDAVLGKHFTDKVDMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIETQLQQNKKVVV 434


>gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
 gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
          Length = 457

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 221/478 (46%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + + I     +     DSR I  ++ F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLANLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+ + G++ L   D   E     ++    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAE-GSLLLAPADPIVE-----AYLPAD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKTNFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           I     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 IALQEGVSEEQIRQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTENQDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103]
 gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103]
          Length = 452

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 190/387 (49%), Gaps = 25/387 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ++ D+R +     F AI G  +D HDF   A+ KGA  ++V+  +      +S+P  
Sbjct: 24  LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVSKHL-----PVSVPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  KLA   R ++ A ++A+TGS GKT+ KEM    L    +T    G+ NN 
Sbjct: 79  VVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCGETLHTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVP+TL R+  +  + + ELG +H GEI + T LVRP  A++  +A AHL  F  +E +
Sbjct: 139 FGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTDLVRPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL   GT  LN D + +   +   H    KT++ F  ++ + DF     + 
Sbjct: 199 AKAKGEIFYGLPARGTAILNADSNDWPRWQENLHG---KTVWRFSPQAADCDFGAHDIRI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +   ++      +++    G H   N L    +   + A +      L       G
Sbjct: 256 RQDGTHFVMRTPRGEADIILPLPGRHNIANALAAAALALSVDAPLSAVQAGLKSLQSVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R + +Q    ++D+SYNAN  SM AA  VLS++     G R+ V+GDM E+G+ S
Sbjct: 316 RLFPVRLSEHQ---LILDDSYNANVGSMVAAAQVLSEMP----GYRVMVVGDMAELGDES 368

Query: 386 QSFHID---------LAEVLSLYNISH 403
           + FH +         L  VLS    SH
Sbjct: 369 EKFHREVGLAAKAAGLDRVLSTGQFSH 395


>gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
 gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
          Length = 455

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 181/364 (49%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL KLA A R      +  ITGS GKTT KEML   L      +   A  G+
Sbjct: 81  --VDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLACVLRHRFGNEAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT +  P++A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYSVIEMGMNHFGELSLLTQIAGPNVALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI+EGL   G   +  +D+     +A +  L  +T        +A+    
Sbjct: 199 GVGDIAKAKSEIYEGLLSDGIALIPCEDANIATFEAATAQLNAQTFGVASGDVHAENIEL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    + + VV    G H   N +    +       +      L  F 
Sbjct: 259 KPLSCE----FDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  + QG    TLID++YNANP SMKAAI VL+ +       RI V+GDM 
Sbjct: 315 NIKG-----RLNIKQGIKGATLIDDTYNANPDSMKAAIDVLAAMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
 gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
          Length = 493

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 207/467 (44%), Gaps = 57/467 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIG---------SL 81
           IDSR + P   F A+ G   +GH F+   + +GA G +V  T++ A            +L
Sbjct: 36  IDSREVEPGTLFVALAGERTNGHTFLPDVIARGALGALVSRTEIEARTTILARTPRRWAL 95

Query: 82  SIPVFG---------------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             PV G               VDD L AL +LAV  R +   T++ ITGSVGKT+TKE L
Sbjct: 96  VNPVTGAGLDSATPGVCLLIAVDDPLMALQRLAVYHRRQLTPTVVGITGSVGKTSTKEAL 155

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS    T     S+N+   VP TL ++    +  + E+GM   GEIRFL  L RP I
Sbjct: 156 AALLSQRFCTLKSKRSFNSEATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLARPQI 215

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T + P HL      E I  AKAE+ E L + G   LN DD     ++  ++A     
Sbjct: 216 GLVTNVGPTHLERLKSQEAIWYAKAELVEELPRDGWAVLNADDPLVWAMRDMTNA----R 271

Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           ++S+G + +A      W    E        M V  Q + + +    IG H     L  + 
Sbjct: 272 VFSYGLAPHATL----WANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMS 327

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  IL  +    I  L+          R R    Q   TLID++YNA P S  AA+ +L 
Sbjct: 328 VGLILGMEWPAMIAGLT----DPAAQARLRVVAGQHATTLIDDTYNAAPISTLAALDLLG 383

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLAL 414
                  GRR+A+LGDM E+G   +  H         +A++L       +W++     A 
Sbjct: 384 ATP----GRRVAILGDMLELGSAEEEGHRQVGQRAAQVADLLVTVGQRAIWIAE----AA 435

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           + A   S H+    T       ++  L+ GD +++K+S       ++
Sbjct: 436 RQAGMPSAHILVCMTNAEAIASVRPRLMPGDHILLKASRGMALEEIV 482


>gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
 gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 193/385 (50%), Gaps = 19/385 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ IS D+R++A    F A++G  +D H F+  AV KGA   VV+      +  +SIP  
Sbjct: 27  VSHISTDTRTVAAGALFLALQGERFDAHQFVAQAVAKGAVAAVVSR----PLADVSIPQI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL ++A   R +    I+AITGS GKTT KEM    L       A  G+ NN 
Sbjct: 83  LVADTRIALGQIAAWVRAQLDLQIVAITGSCGKTTLKEMCAAILQQAAPVLATQGNLNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL R+  D  + + ELG +H GEI + T LV+P +AVI  +A AHL+ F  +  +
Sbjct: 143 IGVPQTLLRLTPDDRYAVVELGANHPGEIAWTTSLVKPDVAVINNVAAAHLAGFGSLRGV 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL  +GT  +N D  F++  +     L ++T +SFG ++  ADF+     Q
Sbjct: 203 AVAKTEIFSGLSDSGTAVINADSEFYDWWR---EILSVRT-FSFGVENPKADFRAENITQ 258

Query: 266 CSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             EQ      L      +++     G H   N L    + + L   +      L+   P 
Sbjct: 259 -DEQGIAAFTLISPLGQIDIQLPIPGLHNVSNALAAAAVTTSLGLSLVQVQSGLANMLPV 317

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR    + + +    TLID++YNA+  S+ AAI  L+ + P   G R+   GDM E+G 
Sbjct: 318 KGRFCVQKLSDD---LTLIDDTYNASVQSVMAAIDTLA-VMP---GYRVLAFGDMGELGA 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            +   H  + E   L  +  V+  G
Sbjct: 371 DAADLHRQIGEHARLKKLDAVFTVG 395


>gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
          Length = 504

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 212/458 (46%), Gaps = 32/458 (6%)

Query: 30  ISIDSRSIAPQEAFFAIK-GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           ++ DSR +  +   +  K G   DGHDFI  A+  GA  V+      A  G+ + P   V
Sbjct: 30  VTPDSREVTAEGTLYVAKPGERADGHDFIDTALGAGAAAVLAERATHAPDGA-AHPAIIV 88

Query: 89  DDVLGALNKLA--VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +D + A+  LA  V  R+R  S  T+I ITGS GKTTTK++L   L++   T A +GSYN
Sbjct: 89  EDAVLAMGALAREVVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYN 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +GVPLT+ R  +D  F + E+G  H+G I +L  +VRP I V+  +  AH  +F G+ 
Sbjct: 149 GEVGVPLTVFRAELDTRFLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVA 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---------LGI-KTIYSFGKSK 254
            IA  K E+ E L   G   LN DD     + A++ A          G+ +        +
Sbjct: 209 NIARTKGELVEALGPDGVAVLNLDDERVAGMAARTAAPITWFTADERGVTRAAEDVAAGR 268

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTA 308
            +     +  +  +Q      LQ G     V H +     G H   N+L           
Sbjct: 269 ASGLVAARDVRSDDQERPVFDLQVGTDEAAVRHPVASGLTGLHHVHNVLAAAAAAHAAGM 328

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     + L    P   R +  R     G  T+I+++YNANP SM+AA+  L+ +     
Sbjct: 329 DPAEIARGLDGLGPAS-RFRMERTDRADG-VTIINDAYNANPESMRAALRTLATLG-RSS 385

Query: 369 GRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422
           GRR  AVLG+M E+G+     H  + E +   NI+ + + G      ++ AL +      
Sbjct: 386 GRRTWAVLGEMLELGDARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEG-SWGE 444

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             H+ +       F+   L  GD+V+VKSSN  G   L
Sbjct: 445 EAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNGVGLAAL 482


>gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 180/366 (49%), Gaps = 19/366 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SIDSR+I     +  I G  +DG  FI      G+   +++ +      S++IP  
Sbjct: 27  IKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLIDKNFKIP-KSINIPYI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL  LA A R +    IIAITGS GKTT+K ++   LS   K     G+ NN 
Sbjct: 86  IVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTSKNIIHSVLSEKYKVEKTHGNLNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+     D D G+ E+G    GEI  LT++ RP +A+IT I  AHL      E I
Sbjct: 146 IGLPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWK 264
           A AK EI EGL+  G    N DD   E+LK    S+ +  KTI SFG     DF++   +
Sbjct: 206 AKAKLEILEGLKDDGIFLYNGDD---EILKKVLPSYDIKQKTI-SFGMGDKVDFKVEARE 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPK 323
             S  +    + +  S+ +    +G H   N     G +++L   + D +   + V   K
Sbjct: 262 YTSTSTNFSYKDENYSVPL----LGSHQVYN-----GALAVLIGKLFDLSYDQIKVGLSK 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     + +  F ++D++Y +NP S+K  + +   +   G   +I VLGDM E+G+
Sbjct: 313 SSNNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGFLD--GYLNKIVVLGDMLELGD 370

Query: 384 LSQSFH 389
              + H
Sbjct: 371 DELNLH 376


>gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 459

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 25/466 (5%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + G
Sbjct: 4   SLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK+
Sbjct: 63  AKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTKD 121

Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   L++   + KTYA   ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L
Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+    LL+ ++  
Sbjct: 179 TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAK 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L  +T  +FG+  + D          +     V      +  +   +G +   N L  + 
Sbjct: 236 LSQQT-KTFGRQLDDDLYATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMT 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  ++        +AL      E R +    A  +    ++ + YN+NP ++K  ++ L+
Sbjct: 294 VGKLMHVTPANMKQALQNVELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLA 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I     G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++
Sbjct: 351 TIPV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKA 408

Query: 422 ------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 +H + +     L   +Q+SL  GDVV++K+S+     +++
Sbjct: 409 GYPAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVL 454


>gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
 gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 216/456 (47%), Gaps = 20/456 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+L A      +G      +  + IDSR++ P   F  + G   DGH F   AV+KG
Sbjct: 4   TLSDILAATGAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +  +         PV  V D + AL +LA A R R  A ++A++GS GKTT KE
Sbjct: 64  AAAVLADRPLAGL--PEGTPVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVKE 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L  +  T     ++NN IG+PL++     +    + ELG+S  GE+  L  +  P
Sbjct: 122 LTAAILGKVGPTAKNYKNFNNRIGLPLSMLEAGENDALWVMELGISAPGEMAPLASIAEP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-G 243
            +AVI  + PAHL     +  +A+ K  +F  L   GT   + D  + EL  A   A  G
Sbjct: 182 DVAVIHNVGPAHLQALGDVAGVAAEKTFLFRSLRPGGTALASMD--YPELWDAARAAFPG 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           ++ + +  K + A ++ +     SE +    ++L    +EVV    G H A+N+L     
Sbjct: 240 VRGMST--KGQAAPYRAKYLGAISEGRGRFFLKLDDLELEVVTPLTGGHFAENILAAAAA 297

Query: 303 VSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             IL A + + A    +   P++    R+ C   QG +TLID++YNANP SM+ AI+  +
Sbjct: 298 ARILGAGEPEIAAGLATAVMPEQ----RFFC-RRQGCYTLIDDTYNANPLSMRRAIAAAA 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           + +       + VLG+M EMG  +++ H  L E  +    + V+  G H  A+ + L RS
Sbjct: 353 ETAQARP--LVLVLGEMREMGAHAEAEHGKLGEAAAASGANAVFYHGAHAEAVGEGLTRS 410

Query: 422 IHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +       +T D     +      G V + K S S
Sbjct: 411 GYAGRFAVVDTPDAFLGALAPMGFGGGVFLFKGSRS 446


>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
           ferrireducens T118]
 gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodoferax ferrireducens T118]
          Length = 480

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 183/383 (47%), Gaps = 25/383 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSL 81
            +  +  D+R++AP + F A++G H+D HDF+  A  +GA   V       D+ A + ++
Sbjct: 28  LIERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVAAVCQASDAGDVEAKLRAV 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTY-AC 139
            +P   V D   AL +LA   R +    +IA+TGS GKTT  +M+   L + K + Y + 
Sbjct: 88  GLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAILRAYKPQAYLST 147

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IGVPLT+ R+    +  + ELGM+H GEI  L  + +P +A++      HL  
Sbjct: 148 QGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHPGEIATLAAIAQPTVALVNNAQREHLEF 207

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--GKSKNAD 257
            + +E +A     + + L   G      DD++  L   K+   G + +  F         
Sbjct: 208 MATVERVAQENGSVIDALPAHGVAVFPADDTYSPLWADKA---GSRVVMRFGSAADGAGA 264

Query: 258 FQLRKWKQCSEQSWMEVQLQ------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            Q+R    C +  W  V  Q        +++      G H  +N L  +         + 
Sbjct: 265 AQVR----CLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKNSLAAVACTLAAGVPLK 320

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + LS F P +GR +     +     TL+D+SYNANP S++AAI VL+ +     G R
Sbjct: 321 HIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRAAIDVLASLP----GPR 376

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
           + VLGDM E+G+    FH +  +
Sbjct: 377 LLVLGDMGEVGDQGPQFHAEAGQ 399


>gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis HI4320]
 gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus
           mirabilis HI4320]
          Length = 460

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 202/446 (45%), Gaps = 15/446 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  IS DSR I     F A+ G  +D HDFI    QKGA  V+VN  +      +  
Sbjct: 27  QLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI-----DVEC 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V D   A+  +A   R  S A I+A+TGS GKT+ KEM    L    +T    G+ 
Sbjct: 82  PQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILRHCGETLYTHGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +  F + ELG +H+GEI +  ++V+P  A++  +  AH+  F  +
Sbjct: 142 NNDIGVPLTLFRLTPEHRFAVIELGANHIGEIAYTVNMVKPDSALVNNLFSAHIEGFGSL 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + IA AK EIF GL++ GT  +N   +   L +   ++   +  +S      ADF     
Sbjct: 202 QGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQHFNSRQTQWSFSLSADSQADFYPTNI 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   +      + +     G H   N L    +   + A +    + L+V    
Sbjct: 262 VVNQLTTDFTLHTPEGGVAITLPLPGRHNIANALAASALALSVGATLTDIQQGLAVLKAV 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR   Y   L  G   L D++YNAN  SM A + VLSQ+     G +I V GDM E+GE
Sbjct: 322 PGR--LYPVELTTGKIVL-DDTYNANDGSMIAGLQVLSQLP----GYKIFVAGDMAELGE 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLV 442
            S+  H D+        I  V   G +   +        H  + ++ +  L   +Q    
Sbjct: 375 DSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQENKGGEHFSFKADLLTQLIPLLQQH-- 432

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468
           D   V+VK S S     ++N L E F
Sbjct: 433 DVVSVLVKGSRSSAMEDIVNALKECF 458


>gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 442

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 221/450 (49%), Gaps = 39/450 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+KG +++G+ F   A+++G    VV+      IG+    +  VD
Sbjct: 17  ITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVDESTPDMIGNEQYII--VD 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R     TII ITG+ GKTTTKE+L   L+        +G+ NN IGV
Sbjct: 75  NVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNLNNDIGV 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  +V P+ A+IT +  AHL  F   + +   
Sbjct: 135 PKTLLRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALITNVGRAHLQGFGSFDGVKRT 194

Query: 210 KAEIFEGLE---KTGTIFLNYDDS-----FFELLKAKSH-----ALGIKTIYSFGKSKNA 256
           KAE+++ +E   +   IF+N + +     F    K++S+        ++  +    + N 
Sbjct: 195 KAELYDFMEAHNRANNIFINAESADLLEMFSTHCKSESYIAYSPTNSVEASFVAEITANN 254

Query: 257 DFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            F   +WK+ + +S  W  V           H IG +   NML  + I   +  +     
Sbjct: 255 PFVSFRWKETNNESDTWHNVGT---------HLIGAYNIANMLAAVSIGRTMGVESKDIC 305

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           KAL  + P   R +  + A N    T+I ++YNANP SMKAA+    ++      R++ +
Sbjct: 306 KALENYIPSNNRSQLIKTAHN----TIIMDAYNANPTSMKAALENFIKMDVE---RKMVI 358

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+GE+S   H  + ++L+L     VWL G   +A ++           E ++ + 
Sbjct: 359 LGDMKELGEVSNCEHQKICDLLNLAQFDCVWLVGKEFMATQNDFKS------FENVEQVI 412

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +Q + V    ++VK SN  G   L ++L
Sbjct: 413 AELQQTDVQNFCILVKGSNGIGLACLKDVL 442


>gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
 gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
          Length = 465

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 44/465 (9%)

Query: 23  PQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           P+G     V  I+ DSR ++    F AIKG   DGH FI  +   GA   +       + 
Sbjct: 20  PEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIPGSFADGALAALAEV----AP 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                 V  V   L A+  +A     +  A ++ I GSVGKT+TKEM+   L+   +T  
Sbjct: 76  AETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIGSVGKTSTKEMVAAVLAQKYRTLK 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NN +GVPLT  RM  + + G+ E+G++H GE+  L  + RP   V T +  AHL 
Sbjct: 136 TEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGEMHRLAKITRPDTVVFTNVGTAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                + I  AK+E+F+ +++ G + +N DD   + L   S   G+  +  FG  +    
Sbjct: 196 FLGSRDGILKAKSEVFDFMDEKGHVIVNGDD---DKLSTISEVHGVAPV-RFGIGEQGYS 251

Query: 259 QLRK-WKQCSEQSWME-----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                W        +E     +  +  S EV+    G HM  N L    +  +    ++ 
Sbjct: 252 HPNDVWADGIVSHGLEGISCVIHTEAGSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQ 311

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +  + P  GR       +    +T+ID+ YNANP SMKA+IS+L +      GRR+
Sbjct: 312 IRSGIESYMPLSGRFH----IIKGDSYTVIDDCYNANPGSMKASISILKEAL----GRRV 363

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           A+LGDM E+GE  +++H ++    +   I  +   G    AL +A+ ++  V Y ET   
Sbjct: 364 AILGDMGELGEKEKAYHEEVGAYAAEQGIDLICCVG----ALSEAMAKAA-VDYMETHPE 418

Query: 433 LFLFIQ-----SSLVD--------GDVVVVKSSNSCGFYRLINLL 464
               ++      +L+D         D ++VK+S++ GF R+++ L
Sbjct: 419 AHCLVRHYPTVEALMDDCGEILEKNDTILVKASHAMGFGRIVSGL 463


>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
          Length = 473

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 208/459 (45%), Gaps = 28/459 (6%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V G +  DSR + P   F AI+G   DGH F   AV  GA  V+ +         +
Sbjct: 23  PERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAVLADH-------PV 75

Query: 82  SIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +P   VDD +  L +LA     L     +I ITGS GKT+TK++    L+ +  T A  
Sbjct: 76  GVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDLGAQVLARLGPTVAPT 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           GS N  +G+PLT+ R   D  F + E     +G I +L  +  P I V+  +  AHL  F
Sbjct: 136 GSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAYLCRIAPPRIGVVLNVGSAHLGEF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E IA AK E+ E L   GT  LN DD     ++ ++ A     + +FG S +AD + 
Sbjct: 196 GSREAIAQAKGELVEALPADGTAVLNADDPLVLGMRHRTRA----RVVTFGTSADADVRA 251

Query: 261 RK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +      +  S+      G  + V     G H   N L    +  +L    +    AL 
Sbjct: 252 TEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHVSNALAVATVAWVLGLGAEEIAAALR 311

Query: 319 VFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P      R+R  +       T+I+++YNANP SM AA++ L+  +     RRIAVLG
Sbjct: 312 EARPL----SRWRMEVTTRDDGVTVINDAYNANPESMTAALTALAAAT---AARRIAVLG 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM----DG 432
            M E+G  + + H ++ E  +   +  + + G     + D   R      + T+      
Sbjct: 365 PMAELGPAAPAAHAEVGETAARVGVDWLIVVGADATPIADGARRGGLAAEAVTVVPDAAA 424

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
               +  +L  GDVVV+K+S S G  ++   LL + PA+
Sbjct: 425 ATALLTPALRAGDVVVIKASRSYGLEQVAAALLAQTPAV 463


>gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 456

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 218/452 (48%), Gaps = 33/452 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR I     F  +   + DGH ++  A+  GA   +   D   +I   SI V 
Sbjct: 25  ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +L     ++    ++AITGS GKTTTK+M    L++    +    ++NN 
Sbjct: 83  PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +AVIT I  AH+  F   + I
Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G + +N D+    LL  K+  +  + + +FG   N D  +R     
Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNND--MRAMDIV 256

Query: 267 SE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           S+         +W EV           + IG +   N L  L + +I    VD   KAL+
Sbjct: 257 SDATKTSFKVATWPEVDF-------TINMIGAYNVFNALAALSVGNIYHIPVDKMQKALA 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R +       +    ++ + YN+NP ++K  +    Q+    EG+RI VLGDM
Sbjct: 310 SFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDM 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFL 435
            E+GE +   H +LA+ ++   I  V+L G  +  L + L        +H+ +  D L L
Sbjct: 365 LELGEKAAEMHNNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQIHHYQKDDLLTL 424

Query: 436 F--IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +++ L+  D+V++K+S+      +++ L+
Sbjct: 425 TSDLKNELMSDDIVLLKASHGIHLENVVSELI 456


>gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
 gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
          Length = 452

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 194/383 (50%), Gaps = 16/383 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ D+R +     F A+KG  +D HDF+  A + GAG ++V+  +     + S+P  
Sbjct: 24  VDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGAGALLVSRKL-----ACSLPQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    L    KT    G+ NN 
Sbjct: 79  VVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGKTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + +F + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTREHEFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G   LN D++  + L  +S  +G + ++ F   +  +DF     + 
Sbjct: 199 AKAKGEIFTGLPQDGIAILNADNN--DWLNWQS-VIGDRQVWRFSPNAAGSDFTASDIQV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   ++    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAMAVGAGLDAVKAGLAKLQAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   +  +L Q    L+D+SYNAN  SM AA  VLS +     G R+ V+GDM E+G+ S
Sbjct: 316 R--LFPISLAQHKL-LLDDSYNANVGSMTAAAQVLSDMP----GYRVLVVGDMAELGDES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
           ++ H  + E      I  V+  G
Sbjct: 369 EACHRQVGEAAKAAGIDRVFSVG 391


>gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
 gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
          Length = 465

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 213/456 (46%), Gaps = 31/456 (6%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V G + IDSR++ P   F AI+G   DGHDF   AV+ GA  V+ +  + A     
Sbjct: 23  PRAVVRGPVVIDSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPVDA----- 77

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             P   V D + AL  LA A  A L S  T+I +TGS GKT+TK++L    + I  T A 
Sbjct: 78  --PAVVVGDTVTALADLATAVCADLPST-TVIGVTGSAGKTSTKDLLARLTARIGPTIAP 134

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           + S+NN IG PLT+ +   D  + + EL     G I  L  +  P I V+  +  AHL  
Sbjct: 135 VESFNNEIGHPLTVLKAGEDTRYLVLELSARDAGHISHLARIAPPRIGVVLNVGTAHLGV 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F G + IA AK E+ E L   G   LN DD     +  ++ A     +  +G++++A  +
Sbjct: 195 FGGKDAIAKAKGELVEALPADGVAVLNADDPLVAAMARRTDA----RVAWYGRAESAAVR 250

Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                     ++   ++    +  VV    G H  +N L        L   V T  + LS
Sbjct: 251 AEGVTLDDRGRAAFTLRTPSGAAPVVLRLYGEHAVENALAAAAAAYELGLPVATIAEELS 310

Query: 319 VFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P+     R+R  +       T+I+++YNANP SM+AA   L  ++  G  RR AV+ 
Sbjct: 311 EAEPR----SRWRMEVTDRADGVTVINDAYNANPDSMRAAFGALDALA--GGRRRFAVIA 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VL----ALKDALPRSIHVHYSET 429
            + E+GE S + +  +  + +   +  +++ G     VL    A  D +P +  V +   
Sbjct: 365 ALRELGEESAALNEGVGRMAAGAGLEGLFVVGPDAGPVLAGAGAAVDGVPSATRVTHVAD 424

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  + + LV GDVV+VK   + G  R+   L+
Sbjct: 425 AQEAAAALSALLVPGDVVLVKGPRAAGLERVAAALV 460


>gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK49]
          Length = 456

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 211/442 (47%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +    +V     L      VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSERPVVEGAYIL------VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +     +S+++   G  Y+    M+     +    ++   A +A S       R + ++ 
Sbjct: 257 DCNFLEQSIDLPVTG-KYNATNAMIAAYAALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++ VL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLVVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    V Y       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVQYFVKNDEKDQFEQLKQAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxidans DMS010]
 gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxydans DMS010]
          Length = 451

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 184/374 (49%), Gaps = 27/374 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G  +D+R I   + F A+KG H DGHD++  A +           +V+ I   ++P  
Sbjct: 25  VSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQAREA-----GAAAALVSEIQDDALPQL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV  A   +A A + + KA ++AITGS GKT+ KEM+T  L  +    A  G+ NN 
Sbjct: 80  VVADVRKAFAHIARAWQQQCKARVVAITGSNGKTSVKEMVTTMLKQVGSVTATQGNLNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTL+ +  D DF + E+G +H GEI  L ++V P IAVI  IA AHL+ F  +E +
Sbjct: 140 LGVPLTLSCLNQDDDFAVIEMGTNHHGEIAELVNIVVPDIAVINNIAAAHLAGFGSLEGV 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K  I++GL   G   +N D  +  L +     +G +   SF     AD +    +  
Sbjct: 200 AKEKGAIYDGLAANGIAVVNADMPYQRLWQP---LIGDRKTISFSLESEADIKADYIQLD 256

Query: 267 SEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              S   V +     +V HH      G H   N L  + +   L   VD  +K LS+   
Sbjct: 257 PASSHFLVNID----DVSHHFNLPLPGMHNVNNALAAIAVAVALDIPVDAMVKGLSLM-- 310

Query: 323 KEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              R   +R  + QG     LID++YNANP S   A++ L+      +G    VLGD  E
Sbjct: 311 ---RSVPHRLQVRQGVNDSRLIDDTYNANPGSYLQALNTLTAF----QGEHWLVLGDFGE 363

Query: 381 MGELSQSFHIDLAE 394
           +G  + + H  + +
Sbjct: 364 LGIDNDNIHQQMGQ 377


>gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 10403S]
          Length = 457

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 26  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455


>gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 518

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 149/486 (30%), Positives = 226/486 (46%), Gaps = 47/486 (9%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASI-- 78
           P   V+G +  DSR I P   F A+ G H DGH+F   A+ +GA  V+   D+ VA++  
Sbjct: 23  PHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLAAKDVGVAAVIM 82

Query: 79  -------GSLS-----IPVFGVDDVLGALNKLA--VAARLRSK--ATIIAITGSVGKTTT 122
                  G  S      P      V+  ++KLA  VA+ L ++   +I+ ITGS GKT+T
Sbjct: 83  PKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIVGITGSAGKTST 142

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS+  +T A  GS+NN +G P T+ R      F + E+    +G I  L  + 
Sbjct: 143 KDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCTESTKFLVAEMSARGIGHIAHLATIA 202

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKS 239
            P   V+  I  AHL  F   E IA+AK E+ E L      G   LN DD     +  ++
Sbjct: 203 PPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALPSAAEGGVAILNADDPLVAGMAPRT 262

Query: 240 HALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A   + +   G+   AD+          +  S+       +   V  +  G H   N L
Sbjct: 263 RA---RVVTFSGQHGAADYYATDISLDDVTRASFTLHSPHNEPQRVELNVFGAHQVSNAL 319

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +      D  T  ++LS  H +   G R          T+I+++YNANP SM+A I
Sbjct: 320 AAAAVGIESGIDAATVARSLSSAHGES--GNRMDVQTRADGVTVINDAYNANPDSMRAGI 377

Query: 358 SVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLAL 414
           + L   +    G R IAVLG+M E+G  S S H +L   L+ Y ++H+   G +  + AL
Sbjct: 378 AALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELARYRVTHLVAVGDNDAMDAL 437

Query: 415 KD-ALPRSIHVHYSETMDGLFLFIQSSLV------DG-------DVVVVKSSNSCGFYRL 460
           KD A  R I+V  +  ++     +Q+ L       +G       DVV+VK+SN+ G + +
Sbjct: 438 KDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYERDARDVVLVKASNALGLWAV 497

Query: 461 INLLLE 466
            N LL 
Sbjct: 498 ANALLR 503


>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
 gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
          Length = 456

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 218/471 (46%), Gaps = 57/471 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I     + G+  D+R+I P   F  I G  ++GHDF+  A+ +GA   + +T    + 
Sbjct: 19  INISEDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKAALWSTKEADAP 78

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             L  P+  V+D + AL +LA        A +IA+TGS GKTTTK+M+     ++ K   
Sbjct: 79  EDL--PLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKDMMAAVCETLWKVQK 136

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLT+  +  D +  I E+GMS  GEI  L+ +  P  A+IT I  +HL 
Sbjct: 137 TQGNFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEPDAAIITNIGESHLQ 196

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HALGIKTIYSFG-KSKNA 256
           +    E IA AK EI +GL+    +  + D+     L  +S H L      +FG +  N 
Sbjct: 197 DLGSRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQSPHPL-----LTFGHRDTNR 251

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            F                       E+VH  +G  +++  N + +  I  +   +V  AI
Sbjct: 252 YF---------------------PQEIVHEPNGTRFNVGGNEIGSYFITVLGAHNVLNAI 290

Query: 315 KALSV--------------FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++               F   +  G R          T+I+++YNA+P S+KAA+ ++
Sbjct: 291 AVIATARWFGIEDHKINLGFQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELV 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVLALKDA 417
             +  H    +  VLGDM E+GE  + FH D   ++    I+ V+  G    H+   K A
Sbjct: 351 QDMKGH--QNKYVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFTYGTLSEHI--QKGA 406

Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L R      +H+S+    L   ++S L   D+V++K S       +   LL
Sbjct: 407 LRRFEEERAMHFSDK-PALISHLKSVLKSDDLVLIKGSRGMKLEEVAEALL 456


>gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 455

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 217/446 (48%), Gaps = 21/446 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D        +IPV 
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHANR--PENIPVL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS     +    ++NN 
Sbjct: 81  VVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M    +  + E+GM   G++  L+ +V P + VIT I  AH+  F   ++I
Sbjct: 141 IGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQ 265
           A AK EI + L++ G    N D+    LL+A++  L  ++  + F    N+   +     
Sbjct: 201 ADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF----NSTDTIYATNF 253

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKE 324
            S        +    ++     IG H   N L  + +       DV+ A +AL+ F P  
Sbjct: 254 NSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA-QALANFVPTA 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIAVLGDM E+G  
Sbjct: 313 NRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAA 369

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQS 439
           S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  + MD +   ++ 
Sbjct: 370 SHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLRE 429

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   D+V++K S+     +++  LL
Sbjct: 430 DIKPHDIVMLKGSHGMHLEKVLEHLL 455


>gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
 gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
          Length = 427

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 218/453 (48%), Gaps = 44/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R + P   F A+KG  +DGHDF   AV  GAG ++V+  ++  +G    P   V 
Sbjct: 1   MTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL--VGG---PQLVVK 55

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN IGV
Sbjct: 56  DTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGV 115

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 116 PLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 175

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267
           K EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF     +  S
Sbjct: 176 KGEIFAGLPAKGTAIINADSNDWPHWQETLHH---KRVWRFAPHGAEDIDFFASDVRIAS 232

Query: 268 EQSW-----------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           + ++           +E+ L G+     H+      A  + M++G       +  T ++A
Sbjct: 233 QVTYFTLHSPFGTVAIELPLPGR-----HNIANALAAAALAMSVGASLAAVREGLTQLQA 287

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +         G+ +   L  G   L+D+SYNAN  SM AA  VL+++     G R+ V+G
Sbjct: 288 VP--------GRLFPIELAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVG 334

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF-- 434
           DM E+GE +   H  + E      I  V   G     L DA     H     T+      
Sbjct: 335 DMGELGETAVDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDASGCGEHFQDKNTLAARVSE 394

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L ++  ++    V++K S S     ++  L E+
Sbjct: 395 LLLEHPVI---TVLIKGSRSAAMEDVVRALQEK 424


>gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter sp. 638]
 gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterobacter sp. 638]
          Length = 452

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 220/443 (49%), Gaps = 21/443 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ D+R I P   F A+KG  +D HDF   A + GAG ++V+  +      + +P  
Sbjct: 24  VDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKENGAGALLVSRKL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +    ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  VVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + ++ + ELG +H GEI +   L RP  A++  +A AHL  F  +E +
Sbjct: 139 IGVPMTLLRLTEEHEYAVIELGANHQGEIAWTVDLTRPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL + G   +N D++ +   +   + +G +  + F   + N+DF       
Sbjct: 199 AKAKGEIYGGLPENGIAIMNADNNDWLNWQ---NIIGSRKTWRFSPNAANSDFSATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   ++     ++V+    G H   N L    +   + A  D AIK   + + K  
Sbjct: 256 TSHGTEFTLKTPTGDVDVLLPLPGRHNIANALAAAALSMAVGATHD-AIKT-GLLNLKAV 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+ +   L +    L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G+ S
Sbjct: 314 PGRLFPIQLAEKKL-LLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMAELGDES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++ HI + +      I  V  +G    A+  A    +  H+++    L   ++  + +  
Sbjct: 369 EACHIQVGDAAKASGIDCVLSAGKLSQAISQA--SGVGEHFADKT-ALITRLKKLVAEHQ 425

Query: 446 V--VVVKSSNSCGFYRLINLLLE 466
           +  V+VK S S     +++ L E
Sbjct: 426 IVTVLVKGSRSAAMEEVVHALQE 448


>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 454

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 213/449 (47%), Gaps = 33/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFG 87
           ++ DSR + P   F A  G  +DGHDF   A++ GA  VV+N   + V    S+  P   
Sbjct: 28  VTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVLNHPVEGVPEEKSVICP--- 84

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             D   A+  L    R +    ++ +TGSVGKTTTK+M   A++    T    G+ NN +
Sbjct: 85  --DSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTIKTEGNQNNEL 142

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+P T+ R+  +  + + E+GMSH GEI  L+   RP + +IT I  +H+ N    E I 
Sbjct: 143 GLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIGNLGSQENIC 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI  GL +   + LN DD F        H   ++ ++     +NAD      +Q  
Sbjct: 203 KAKLEICAGLPEGAPLVLNGDDPFLRKAVLPDH---VRPVWFSLGDENADVCALSIQQ-- 257

Query: 268 EQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           ++  M   L+     +  V    +G H   N L      + L  +    I  L+ F   E
Sbjct: 258 DEKGMSFVLEDHEEGTFLVKIPAMGRHNVANALAAYCAATRLGLNARRVIAGLADF---E 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G R +    +G   +I++ YNANP SMKAA+++  +       RR A+LGDM E+G++
Sbjct: 315 QTGMRQKVVHARG-VDVIEDCYNANPDSMKAALAMFREYPCK---RRFALLGDMLELGDI 370

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH-YSETMDGLFLFIQ 438
           S++ H ++        + ++   G       V+A    LP ++H   Y++  + L   +Q
Sbjct: 371 SRAAHEEVGRQAVENKVDYLVTYGEQAKRIAVVAAAKGLP-TLHADTYAQAAETLLDKMQ 429

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                GD ++VK+S      +++ +  +E
Sbjct: 430 P----GDALLVKASRGMALEKVLEIFYKE 454


>gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 461

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 199/413 (48%), Gaps = 27/413 (6%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   +S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + G
Sbjct: 4   TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQG-ERDGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A         VA+    +I   P   V++ L A  KLA     + +  +IA+TGS GKT+
Sbjct: 63  A---------VATFSERAISGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ +
Sbjct: 114 TKDMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRI 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIA++T I  AHL+ F   E+IA  K +I +G++  G I +   D   +     S  
Sbjct: 174 ARPHIALLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNG-ILIAPGDPILDPYLPDS-- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  +  +   K+C +       +  +   V     G + A N ++   
Sbjct: 231 ---QMVIRFGDHQ--ELVVEDIKECKDSLTFRTNVLPRP--VTLPLTGKYNATNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+AL        R +  + A       L+ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVPDEDIIEALETVKLTRHRTEWVKAA---NGADLLADVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            I  +  G++IAVL DM E+G  S + H  L   L    I  +   G  + AL
Sbjct: 341 AIPANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQAL 393


>gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae DSM 12163]
          Length = 452

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 207/443 (46%), Gaps = 25/443 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R       F A+KG  +D HDF+L A+  G   ++V+  +   +  + +      
Sbjct: 27  VTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVSKRLPVDVSQVVVA----- 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +S A I+A+TGS GKT+ KEM    L    +T    G+ NN IGV
Sbjct: 82  DTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     + + ELG +H GEI + T LVRP  A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLKPQHRYAVIELGANHQGEIAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268
           K EIF GL   GT  +N + + +   +   H    KT++ F   + ++DF        ++
Sbjct: 202 KGEIFSGLPLNGTAIINGESNDWPHWQQALHG---KTVWRFSPGQADSDFYASDVIISAQ 258

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +      ++V     G H   N L    +   + A +    + LS      GR  
Sbjct: 259 GTHFTLHSPQGDVDVTLPLPGRHNIANALAASALALSVGAPLSAVRRGLSTLKAVPGR-- 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +  AL+     L+D+SYNAN  SM AA  VL+ +     G R+ ++GDM EMG  +   
Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGM----PGYRVMIVGDMAEMGAEAAEC 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444
           H  +   +    I  V  +G     + DA    +  H+++        + L  Q   +  
Sbjct: 372 HRQVGNAIRHAGIDKVLSTGLLSHGISDA--SGVGEHFADKAALGARAIELLAQHQHI-- 427

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
             ++VK S S    +++ +L E+
Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449


>gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
 gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
          Length = 460

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 201/446 (45%), Gaps = 15/446 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  IS DSR I     F A+ G  +D HDFI    QKGA  V+VN  +      +  
Sbjct: 27  QLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI-----DVEC 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V D   A+  +A   R  S A I+A+TGS GKT+ KEM    L    +T    G+ 
Sbjct: 82  PQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILRHCGETLYTHGNL 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +  F + ELG +H+GEI +   +V+P  A++  +  AH+  F  +
Sbjct: 142 NNDIGVPLTLFRLTPEHRFAVIELGANHIGEIAYTVDMVKPDSALVNNLFSAHIEGFGSL 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + IA AK EIF GL++ GT  +N   +   L +   ++   +  +S      ADF     
Sbjct: 202 QGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQHFNSRQTQWSFSLSADTQADFYPTDI 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   +      + +     G H   N L    +   + A +    + L+V    
Sbjct: 262 VVNQLTTDFTLHTPEGCVAITLPLPGRHNIANALAASALALSVGATLTDIQQGLAVLKAV 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR   Y   L  G   L D++YNAN  SM A + VLSQ+     G +I V GDM E+GE
Sbjct: 322 PGR--LYPVELTTGKIVL-DDTYNANDGSMMAGLQVLSQLP----GYKIFVAGDMAELGE 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLV 442
            S+  H D+        I  V   G +   +        H  + ++ +  L   +Q    
Sbjct: 375 DSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQENEGGEHFSFKADLLTQLIPLLQQH-- 432

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468
           D   V+VK S S     ++N L E F
Sbjct: 433 DVVSVLVKGSRSSAMEDIVNALKECF 458


>gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arsenophonus nasoniae]
          Length = 452

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 189/369 (51%), Gaps = 16/369 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++N ++ +SR    +  F A+KG H+DGH F   A   GA  ++V   +     ++  P 
Sbjct: 21  WLNAVTTNSRQRPIKGLFIALKGKHFDGHHFAEQATIAGASALLVERPL-----TIHCPQ 75

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   A+ KLA   R +SKA +I +TGS GKT+ KEM+   L+    T    G++NN
Sbjct: 76  VIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLFTEGNFNN 135

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+  + ++ + E+G +H+GEI + T++VRP   ++  +  AHL  F  +  
Sbjct: 136 DIGVPLTLFRLTAEHEYAVIEMGANHIGEIAYTTNMVRPDSVLVNNLFAAHLEGFGSLTG 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKW 263
           +A AK EIF+GL + GT  +N     ++    +S+    +T++ F   K + ADF     
Sbjct: 196 VAKAKGEIFQGLAEQGTAVINLASHDWK--NWQSYFKQQQTLWRFSLTKQQQADFYAENI 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S  S  E+        +     G H   N L    +   + A ++     L+   P 
Sbjct: 254 AIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALAMSVGATLEQVSLGLAHVQPV 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR   Y   L  G   ++D++YNAN  SM AA  VLSQ+     G RI V+GDM E+G+
Sbjct: 314 SGR--LYPIYLAPGKL-ILDDTYNANTGSMIAAADVLSQMP----GYRILVVGDMGELGD 366

Query: 384 LSQSFHIDL 392
            ++  H ++
Sbjct: 367 KTEKCHQEV 375


>gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
 gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
          Length = 466

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 207/449 (46%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+   V  G  + +V   + A I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG+      
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGEGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL                QG S  V     G H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSF-VRLPFAGEHNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++  +K L     ++ +G + R   + +     ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 539

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 220/475 (46%), Gaps = 37/475 (7%)

Query: 10  LLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           +++A  G +IG+     Q F +  + DSR +     F A  G   DGH FI  A ++GA 
Sbjct: 9   IIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGAT 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKTTT 122
           L +V  +++   G +  P   V DV+ A+  LA  +    R + + T+I ITGS GKTTT
Sbjct: 69  LALVEREVLDEQG-VPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGITGSAGKTTT 127

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L    +    T A +GSYN+ +GVPLT+ R      + + E+G  H+G I +L ++ 
Sbjct: 128 KDLLAAIFTPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVGNIEYLANIA 187

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P    I  +  AH   F G++ I   K E+ EG++ TG++ LN DD    +L+  S ++
Sbjct: 188 HPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDE--RVLRMASRSV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWK------QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMA 293
              T +  G+   A+ Q  +        + ++    E  L+   G   E+    IG H  
Sbjct: 246 APITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQLIGEHHV 305

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L     V+  +      I           + +  R     G  T+I+++YNANP SM
Sbjct: 306 HNLLAA-ATVAYNSGISGEKIARALNKAAAASKWRMARTDRADG-VTVINDAYNANPESM 363

Query: 354 KAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            AA+  L+Q+          PH   R  AVLG M E+G+ S   H  +  ++   NIS +
Sbjct: 364 AAALRTLAQLGRTVDPATGQPH---RTWAVLGAMLELGDASVEEHDRIGRLVVRMNISKL 420

Query: 405 WLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              G       +A            + +T +     +++ +  GD+V+ KSSN  
Sbjct: 421 IAVGDETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGA 475


>gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 452

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 201/414 (48%), Gaps = 58/414 (14%)

Query: 17  HSIGIVPQGFVNGI-------SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + +  + QG +NG+       S DSR+I  Q  F A+ G  +D H F+  A ++GA  ++
Sbjct: 7   NEVANICQGRLNGVNTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEEQGAVALL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+ ++ +S+     P   V D   A   L      +  +  IA+TGS GKTT KEML   
Sbjct: 67  VSHEVDSSL-----PQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKTTVKEMLASI 121

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L    +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T LVRP +A++
Sbjct: 122 LKRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFSVIELGANHQNEIAYTTQLVRPDVALV 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             IA AHL  F  IE +A AK EIFEGL++  T   N D +    L   S     KT+ S
Sbjct: 182 NNIAAAHLEGFGSIEGVAKAKGEIFEGLKENATAIYNLDSNG---LPRWSDLFENKTVLS 238

Query: 250 FGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---- 304
           F +  N ADF           S +E+   G S   ++  +G     +++++L I+     
Sbjct: 239 FSQENNQADFH---------ASNIEINGLGASSFTLNTPVG-----SIVVSLTIIGKHNV 284

Query: 305 --------------ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                            AD+   +++L     +  +G+     L  G   +ID++YNA+ 
Sbjct: 285 SNAVAAAALAVQANCTLADIQQGLQSL-----ENVKGRVAVEVLPSG-LKVIDDTYNASV 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +MKAA+ +L   +    G R  VLG+M E+G+ S + H ++ E  + Y    V
Sbjct: 339 PAMKAAVDLLGGFN----GSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQV 388


>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Brevibacillus brevis NBRC 100599]
          Length = 460

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 182/365 (49%), Gaps = 11/365 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPV 85
           ++ +  D+R +     F A+ G   DGHDF+L A ++GA   +V N + +         +
Sbjct: 26  LSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALVSNQEKIPGDLPNDFGL 85

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L    KLA A R       IAITGS+GKTT K+++   L+S    Y    ++NN
Sbjct: 86  ILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGKTTVKDIVAHVLASRSPVYKTYKNFNN 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPL+L +M  +    + ELGM+H GEI  L  LV+P I+VIT I  +H+  F   E+
Sbjct: 146 HIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLASLVQPDISVITFIGESHIEYFGTREK 205

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AKAE+       G + LN D  +  L+   +H    + +Y +  ++ AD    + + 
Sbjct: 206 IALAKAELLPHTALDGLVLLNKDSEYLRLI---AHLYPGELMY-YSVNEKADIWAEQIET 261

Query: 266 CSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +  +V L  G+  E      G H   N L  + I   L  D +    ALS     +
Sbjct: 262 VEGGTRFKVYLASGEYFEAFLPLHGRHSVLNALPAVAIAKRLGMDTEQIAYALSTV---Q 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+     +     I ++YNA+P SM+AA+   +++ P  E  RI VLGDM E+G  
Sbjct: 319 LSAMRFEQINGKHATVYISDAYNASPVSMEAAVRTFAELYP--ECARIVVLGDMYELGPD 376

Query: 385 SQSFH 389
           S++ H
Sbjct: 377 SRAMH 381


>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 460

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 223/447 (49%), Gaps = 30/447 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR +     F  ++G   DGH ++  A   GA   +  +D   +  +   P+ 
Sbjct: 26  ITSVAFDSRQLDSGALFIPLQGAQ-DGHQYVESAFANGAVATLWASDHDVTT-TEDQPIL 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            VDD L +L +L+     +    ++A+TGS GKTTTK+M    LS+   + KT+A   ++
Sbjct: 84  VVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTKDMTASILSTQLNVTKTHA---NF 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M    +  + E+GM   G++ FL+ LV P  AVIT I  AH+  F   
Sbjct: 141 NNEIGVPVTLLNMESSTEVVVVEMGMDRPGQLDFLSKLVSPDFAVITMIGEAHIEFFGTR 200

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI  GL++ GT   N D+    LL+ ++  +  + + +FG+    DF     
Sbjct: 201 DKIADAKMEIVHGLKEDGTFIFNGDEP---LLQERAANVEQRKV-TFGRQLTDDFYATSV 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVF 320
            Q       +V  +    E     +G +   N L  + +   + I  A +  A+K + + 
Sbjct: 257 NQHETSIDFKVN-EWPDEEFTIPMVGEYNVNNALAAIAVGKQLHITPAHIKKALKNVEL- 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              E R +    A  QG   L D  YN+NP + K  +  + ++     G+RIAVLGDM E
Sbjct: 315 --TENRAEWVNGA--QGERILSD-VYNSNPTAAKQVLKTIEELPT--TGKRIAVLGDMLE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------SIHVHYSETMDGLF 434
           +G+ S   H  LA  +    I  V+L G  +  L+DAL +      +IH + +  +D L 
Sbjct: 368 LGDASARLHASLAANIDPKKIEEVYLVGSEMENLQDALEKQGYPASAIHHYSTAELDKLV 427

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           + +Q+++   D+V++K+S+     +++
Sbjct: 428 VDLQATISADDLVLLKASHGIHLEKVL 454


>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
 gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 20/374 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S D+RSI P + F  + G ++DGH ++  A+Q+GA   +  T           P+ 
Sbjct: 14  IAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETKRELPQELADAPLL 73

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +LA + R      +I ITGS GKTTTK+M+   L +  K +   G+ NNH
Sbjct: 74  FVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLGTAYKVHKTAGNLNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++  + D  + E+GMS  GEI  LT++ RP +AVIT I  AHL      E I
Sbjct: 134 IGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIGDAHLLQLGSREGI 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK---TIYSFGKSKNADFQLRKW 263
           A AK EI  GL   G +  N D+    LL A+   + +     + +FG  ++ D+     
Sbjct: 194 AKAKLEIAHGLHSGGILLYNGDEP---LLAAELAGMSLPEGTQLQTFGLGESNDWSAADI 250

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI---VSILTADVDTAIKAL 317
           +  +  S   V+ +G+      + I   G H   N L  + I     I   ++   +  L
Sbjct: 251 EVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGRRFGISEENIRNGLIGL 310

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            +       G R +         +++++YNANP +++AAI ++ Q+S  G  R+  VLGD
Sbjct: 311 EL------TGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLS--GFRRKWIVLGD 362

Query: 378 MCEMGELSQSFHID 391
           M E+G   +S H +
Sbjct: 363 MRELGPEEESLHFE 376


>gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 484

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 201/412 (48%), Gaps = 13/412 (3%)

Query: 48  GPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           G  YD     L  V Q+GA  VV+  D + +     + V+   D   AL +L  AAR  +
Sbjct: 60  GRGYDKDRESLQRVKQRGARAVVL--DAIPAEVPEGLSVYLAPDTSLALAQLGQAARALA 117

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ +TG+VGK+TTK  L I L+   +T+    ++N++ GV LTLA  P D +F + E
Sbjct: 118 SHPLVCVTGTVGKSTTKRGLAILLARCGRTHESQRNFNHYHGVTLTLADTPKDTEFSVLE 177

Query: 167 LGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              S L        L+  P +AVIT I   H   +  +E IA  K+ +F GL+  GT  L
Sbjct: 178 FS-SDLPRYTLPKALIAAPDVAVITEIQYDHTDCYPTLEAIADQKSLLFRGLKPEGTAVL 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--W-MEVQLQGKSME 282
           N D  +F  + A + + G   + +FG S  AD  L   + CS Q   W +  +   +S+ 
Sbjct: 237 NRDSPYFARMHAAARSYGAARVLTFGCSPLADVAL---QDCSRQRSGWQVRARCLDQSLT 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L  L  V  L  D +  + A S   P          A+  G   LI
Sbjct: 294 YTLPLPGRHDVRNSLAMLAGVVALGQDPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLI 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+++NPAS++AA+  L+  +    GRR+ VLG + E+GE S + H  LA+++ L+ I 
Sbjct: 354 DDSFSSNPASLRAALETLALQAEGSPGRRLLVLGAIDELGERSDALHASLADLILLHRID 413

Query: 403 HVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            V+  G H      ALP   + +H +E  + L   + + L   D +V+K S 
Sbjct: 414 RVYAYGSHTRHTCAALPDHLVALHTTEARE-LTQVLMADLQPDDWLVLKFSR 464


>gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116]
          Length = 454

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 216/448 (48%), Gaps = 23/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+RSI     F A+ G  +D HDF   AV+ GAG ++V   +  ++  + +   
Sbjct: 24  IESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQKRVNVNVPQVVVG-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL ++A       +   +AITGS GKTT KEM+   L    K     G++NN 
Sbjct: 82  ---DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK-- 262
             AK EI++GL   G   +N D +      AK    L  K + +F +S  +ADF      
Sbjct: 199 KQAKGEIYQGLAAGGIAIVNLDSNG----GAKWDEVLADKNVITFSQSNADADFYASNIV 254

Query: 263 WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                E S+ + +    + +E+    IG H   N +    I   + A ++     L   +
Sbjct: 255 MSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASIIALKMGATLEEIRSGLKHLN 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR +    +       LID+SYNA+  +MKAA+ +L+      +G+R  +LG+M E+
Sbjct: 315 KVKGRVEVEELSDK---IKLIDDSYNASVPAMKAAVDLLAAF----QGQRWLILGNMAEL 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSS 440
           GE S + H  + E  +     HV   G     + + L   IH   + E +D +   +  +
Sbjct: 368 GEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDGIHFETHQEMIDYIKQHLDQA 426

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + +   ++VK +N    + +   L E +
Sbjct: 427 VPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
 gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
          Length = 470

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468


>gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
 gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
          Length = 474

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 179/383 (46%), Gaps = 46/383 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIG 79
           P   + G+S D+R++ P   F A+KG  +DGHD +  A   GA   +V   N D      
Sbjct: 21  PDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGAAAAIVSHLNPD------ 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + +P   V+D L AL  L    R +    +IAITGS GKTT K++L    +    T A 
Sbjct: 75  -IDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQLLASICAQAGPTLAT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           +G+ NN IGVPLTL  +  D+D F + E+G +HLGEI  LT L RP + +IT    AH+ 
Sbjct: 134 LGNLNNDIGVPLTLLSLS-DIDQFAVIEMGANHLGEIARLTALARPDVGLITMAGTAHVG 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F  ++ I   K E+F GL       +N D            + G    ++ G ++   F
Sbjct: 193 EFGSVDAIVQGKGELFVGLVPEAQAVINLD------------SYGADRWWAMGSAQRNGF 240

Query: 259 QLRKWKQCSEQSWM-EVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSIL 306
            L    +     W  E     + + +  +G            G H A N+L  + +    
Sbjct: 241 TLNNDPRA---RWTGEYNATTERLTIFENGQLLIESQPLPLPGAHNATNLLAAVAVARTA 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  +  L+ F P  GR     C+      T+I+++YNANP SM AA+  L      
Sbjct: 298 GFSKEIILAGLNSFTPPAGRMSLVACSEQ---LTVINDTYNANPESMCAALDYLV----G 350

Query: 367 GEGRRIAVLGDMCEMGELSQSFH 389
             G  +AVLGDM E+G+LS + H
Sbjct: 351 RPGLHLAVLGDMGELGDLSAALH 373


>gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 218/456 (47%), Gaps = 44/456 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ID+R + P   F A+KG  +DGHDF   AV  GAG ++V+  ++     ++ P  
Sbjct: 25  ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLL-----VAAPQL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN 
Sbjct: 80  VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNND 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +
Sbjct: 140 IGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGV 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF---QLR 261
           A AK EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF    +R
Sbjct: 200 AQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFAPLGAEDIDFFASDVR 256

Query: 262 KWKQCSEQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              Q +  +         +E+ L G+     H+      A  + M++G       +  T 
Sbjct: 257 ITPQVTHFTLHSPFGTVGIELPLPGR-----HNIANALAAAALAMSVGASLAAVREGLTQ 311

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           + A+         G+ +   L  G   L+D+SYNAN  SM AA  VL+++     G R+ 
Sbjct: 312 LPAVP--------GRLFPIELAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVM 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V+GDM E+GE +   H  + E      I  V   G     L DA     H     T+   
Sbjct: 359 VVGDMGELGETAVDCHRQVGEAAQQAGIDKVLSVGTLSQTLSDASGCGEHFQDKNTLAAR 418

Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              L ++  ++    V++K S S     ++  L E+
Sbjct: 419 VSELLLEHPVI---TVLIKGSRSAAMENVVRALQEK 451


>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 482

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 202/422 (47%), Gaps = 31/422 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +   ++G   G   Q   +G  IDSR +   E FFA+ G   DGHD+I  A QK
Sbjct: 1   MWDSQRIADLVRGELTGD-SQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQK 59

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA +V+   + +     + +P    +  V+  L A+  LA A R    A ++AITGS GK
Sbjct: 60  GASVVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   +T+  + + NN +G+P+T+ +   + +  I E+GM  LG+I FL 
Sbjct: 120 TTTKDMVAAVLSEKYRTHKNLENQNNELGLPMTILKATENTEVLILEMGMRGLGQIAFLC 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---------- 229
            +  P I VIT I   H+      E IA AK E+ E L +TG+  LN +D          
Sbjct: 180 DIACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWSVKQAEHD 239

Query: 230 ---SFFELLKAKSHA--LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              +FF  L+ + H   L  +++  FG +    FQ            +  +    S+ V 
Sbjct: 240 SHRTFFYGLEGRFHEPDLRGRSLTPFG-TLGTCFQAEMGHGDRSLVPLGEKQAASSVTVR 298

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLI 342
               G H   + L  L +  +L   ++   + L+          R R  L  G    TLI
Sbjct: 299 LPLPGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELS-----RMRLELQPGPGGSTLI 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + YNANP SMKA++ VL +    G    +A+LG+M E+G+  ++ H ++ + ++   IS
Sbjct: 354 SDVYNANPTSMKASLQVLKE---RGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGIS 410

Query: 403 HV 404
            +
Sbjct: 411 EL 412


>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes Clip81459]
 gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 457

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+      +  PV 
Sbjct: 26  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PMDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455


>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
 gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
          Length = 447

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+      +  PV 
Sbjct: 16  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PMDFPVI 73

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 74  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 134 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 194 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 249 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 301

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 302 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 361 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 420

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 421 MNGNEWILVKGSYGMGLKDVVENLI 445


>gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
 gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
          Length = 460

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 33/380 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I  +  F A+KG  +D HDF   A + GA  ++V+  +      + +P  
Sbjct: 24  IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAKALLVSKPL-----PVELPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKAT------IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V D   AL  +   A L+++ T       +A+TGS GKTT KEM    L++  +  A  
Sbjct: 79  VVSDTRIALGMMG--AWLKAQMTEKYGLQTVALTGSCGKTTVKEMSAAILANKGQVLATA 136

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV+P++A+I  IA AHL  F
Sbjct: 137 GNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEISYTTNLVKPNVALINNIAAAHLEGF 196

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             ++ +A AK EIFEGL + GT  +N    D + ++ L A    L   T      S  AD
Sbjct: 197 GSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQPLLADHQVLTFST-----DSHQAD 251

Query: 258 FQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +   + K  ++    +      GK +++     G H   N L    +   L A +     
Sbjct: 252 YFAEEIKITTQGLACFTMCTPIGK-IDINLALAGIHNVSNALAAAALTVSLGATLADVKA 310

Query: 316 ALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L      +GR      CA       LID++YNA+ A++KAAI VL+      EG+R  +
Sbjct: 311 GLETMANVKGRLDITEPCA----GLRLIDDTYNASVAAVKAAIDVLASF----EGKRYFI 362

Query: 375 LGDMCEMGELSQSFHIDLAE 394
            GDM E+GE S + H ++ E
Sbjct: 363 FGDMAELGEESDNLHREVGE 382


>gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica W22703]
          Length = 454

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 218/456 (47%), Gaps = 44/456 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ID+R + P   F A+KG  +DGHDF   AV  GAG ++V+  ++     +  P  
Sbjct: 25  ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLL-----VEAPQL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN 
Sbjct: 80  VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTSGNFNND 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +
Sbjct: 140 IGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGV 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264
           A AK EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF     +
Sbjct: 200 AQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHGAEDIDFFASDVR 256

Query: 265 QCSEQSW-----------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              + ++           +E+ L G+     H+      A  + M++G       +  T 
Sbjct: 257 ITPKTTYFTLHSPLGTVAIELPLPGR-----HNIANALAAAALAMSVGASLAAVREGLTQ 311

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++A+         G+ +   L  G   L+D+SYNAN  SM AA  VL+++     G R+ 
Sbjct: 312 LQAVP--------GRLFPIELAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVM 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V+GDM E+GE +   H  + E      I+ V   G     L DA     H     T+   
Sbjct: 359 VVGDMGELGETAVDCHRQVGEAAKQAGINKVLSVGALSQTLSDASGCGEHFQDKNTLAAR 418

Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              L ++  ++    V++K S S     ++  L E+
Sbjct: 419 VSELLLEHPVI---TVLIKGSRSAAMENVVRALQEK 451


>gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 457

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 213/457 (46%), Gaps = 39/457 (8%)

Query: 24  QGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           + F+N   ISIDSR+I   + F AIKG  +DGH F+   ++KG   VV+   M  S+  +
Sbjct: 23  EDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKGVKSVVIKKGMQKSL-PI 81

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             P + V+D L A  KLA+  R +    I+AITGSVGKTTTKEM+   L  + +      
Sbjct: 82  DFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMMGEVLKKLGRIKLSYS 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN IGV LT+    V+    + E+GM  LG+I  L+    P IAVIT I  AH+    
Sbjct: 142 NFNNEIGVGLTILDTDVEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLG 201

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNA 256
             + I  AK EI + L   G + +  +DS       E  K +   + +  I +  +    
Sbjct: 202 SKKNITYAKCEISKFLNPKGVVIIPANDSLLEETLKEFWKGRVIKVELLNIENQNERFKK 261

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D  LR +   S ++   + +Q  + E+     G+H A N L   G+   L  D  +  K 
Sbjct: 262 DDNLRGFYNPSNKT---ISIQENTFEISFG--GFHNASNFLFAYGVAKELGIDFSSFNKF 316

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              F    GR K  +        T+ DESYNA+P S+KA I  L +  P  +     + G
Sbjct: 317 --NFASLGGRNKILKSVKT----TIYDESYNASPESVKACIKTLLE-KPRNQ---FFIFG 366

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            M E+GE S+ +H    E+ +L N S +       L + D     I+ +Y +      + 
Sbjct: 367 SMQELGEESEKYH---KEIFNLINNSDIE----KCLFICDKKNERIYANYLKDNKKFLVL 419

Query: 437 ---------IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    I  S   GD +++K S      ++I L+
Sbjct: 420 NNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 457

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 212/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+S+P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNIKNALAATALAMNVGAKLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 452

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 207/461 (44%), Gaps = 51/461 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ D+R ++P + F A+ G  +DGH+F+  A   GA   VV+  + + +  +     
Sbjct: 24  VTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSRRVASPLAQIE---- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  LA AAR      ++A+TG+ GKTT KEML   LS +  T A  G+ NN 
Sbjct: 80  -VADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEMLAAILSRVHPTLATRGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P TL  +       + ELG +HLGEI + T L  P +AVIT +  AH+  F GI  I
Sbjct: 139 IGAPQTLLALSSAHRRAVIELGANHLGEIAWTTSLAIPDVAVITNVTGAHVGEFGGIGRI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AKAEI  GL  +GT  LN DD F+ + +  +   G   +  FG    A  +      C
Sbjct: 199 AQAKAEILLGLSASGTAVLNRDDRFYPMWRELA---GDAEVLDFGLDPAARVRAEALA-C 254

Query: 267 SEQSWMEVQL--QGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +       L   G S+  V    +G +  +N L +      L    +  +  L      
Sbjct: 255 DDDGRYAFTLFVDGVSLGRVRLALLGRYNVRNALASAAAAWALRVPAEDIVAGLEACRTM 314

Query: 324 EG--------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            G        RG R           L+D++YNANP +++AA++VL+++       R   L
Sbjct: 315 PGRMMNVPGIRGTR-----------LLDDTYNANPGAVRAALAVLAEMPAP----RWCFL 359

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-------RSIHVHYSE 428
           G + E+G  S+  H DL  V     I  +   G       DA P       R  H    +
Sbjct: 360 GALGELGAESERLHADLGRVARELKIDFLGTFG------ADARPAVAAFGDRGCHF---D 410

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               L  +    L  G  V+VK S S G  RLI  L  + P
Sbjct: 411 DWAALVRYAHDHLPPGASVLVKGSRSAGMERLIADLRTDAP 451


>gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
          Length = 453

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 215/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+   + + I     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVVTLTEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E     ++    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----AYLPAD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK       +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLIERKDSLTFNANFLE---QDLDLPVT----GKYNATNA-MIAA 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIRL--AFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               HV Y       +  + L   ++ SL   D +++K SNS    +L+  L+
Sbjct: 401 FPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLM 453


>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
 gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
          Length = 470

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+      +  PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PMDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 384 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 MNGNEWILVKGSYGMGLKDVVENLI 468


>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 451

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 184/371 (49%), Gaps = 34/371 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  + +DSR +AP   F A+ G   DGHDFI  A ++GA   +V  D     G   +PV 
Sbjct: 24  VGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRGAAAALVERD-----GDWPLPVV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  L  A R R  A ++ +TGS GKTT KEM+   L+    T A  G+ NN 
Sbjct: 79  RVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKEMIAAILARRGATLATRGNLNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTL R+  +  + + E+G +  GEI  LT +  P +AVIT   PAHL  F  +  +
Sbjct: 139 LGVPLTLLRLDREHRYAVIEMGANAPGEIARLTAIAAPEVAVITNAGPAHLEGFGDLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           A AK E+F GL   G   +N DD    +++ L       +G +    FG+  +AD +   
Sbjct: 199 ARAKGELFLGLPDAGVAVVNADDPQAPTWYAL-------VGDRRCLRFGRGADADVRA-- 249

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN---MLMTLGIVSILTADVDTAIKALSV 319
               +     E+Q+ G    V     G H   N          + +   D+   ++A S 
Sbjct: 250 -TAETAGGHFELQIPGGRHPVRLPLPGRHNVMNALAAAAVAVALEVPLGDIVAGLEACSG 308

Query: 320 FHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              + + R  R  C        ++D++YNANPAS++AA+ VL+  + HGE  R  VLGDM
Sbjct: 309 VAGRLQWRTGREDC-------RILDDTYNANPASLQAALDVLA--AEHGE--RWLVLGDM 357

Query: 379 CEMGELSQSFH 389
            E+G  +++ H
Sbjct: 358 GELGAGAEALH 368


>gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Haemophilus influenzae F3031]
 gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3031]
          Length = 457

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 212/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+S+P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 463

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 226/482 (46%), Gaps = 80/482 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ DSR +   + F AIKG   DGHD+I  AV +GA  +V++      I   S+   
Sbjct: 26  VGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAVSRGAQALVLSRTPSIQIPE-SVLAL 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD + AL KLA   R +  A  I ITGSVGKT+TKE+    LS    T     SYNN 
Sbjct: 85  EVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTSTKEVTASILSRKFVTLRSQKSYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG+PLTL  +  +V+  + E+G ++ +GEI +L  + +P I V+  +  AH+     +E 
Sbjct: 145 IGLPLTLLGLTPEVEVAVLEMGGAYRMGEIEYLCSIAKPFIGVVIVVGYAHIGRMGSLER 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKW 263
           IA  K+E+   L   G   LN DD   + +    K+H +                    W
Sbjct: 205 IAENKSELVRSLPSEGFAILNRDDHRVKAMADVTKAHVV--------------------W 244

Query: 264 KQCSEQSWME---------------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               E+S++                + +  +S +V    +G H    +L ++ +  ++  
Sbjct: 245 YGLDEESYIRATDVVSEGLNGIRFVLHIGDRSYQVKAPLLGRHSVHTILASVAVAHVMGM 304

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPH 366
           +    + A+    P        R  +N+G    T++D++YNANP SM AA+++L+ I   
Sbjct: 305 EDQEIVHAIKELPPG------LRLIVNKGINGSTILDDTYNANPTSMLAALNLLNDI--- 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDL----AEVLS-LYNISHV-----------WLSGFH 410
            EG RIAVLGDM E+G  ++  H+ +    AEV   LY +  +            ++   
Sbjct: 356 -EGHRIAVLGDMAELGHFTEEGHLKVGARAAEVCDKLYTVGELAQIIARGALQAGMNPGD 414

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           V+ LKD         Y E +D     ++  L +GDVV+VK+S      +L+  L  +   
Sbjct: 415 VVTLKD---------YQEAID----VLKRDLHEGDVVLVKASRIVSLDKLVAALTVQNEV 461

Query: 471 IQ 472
           +Q
Sbjct: 462 VQ 463


>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 224/469 (47%), Gaps = 23/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   D+++A +G  +       +  +S DS SI     F  I G   D H FI  A+  G
Sbjct: 4   FYVRDIVKATKGEVLCGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI---IAITGSVGKTT 121
           A + V+ ++     G+  +P   V +   AL ++    +   K  I   I +TGSVGKTT
Sbjct: 64  A-VAVLTSEHDEMTGN--VPYIRVSNTTMALQEIG---KYYGKLMIMPKIGVTGSVGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+  ALS+  K +   G+ N+ IGVPLTL +M  D    + E+GMS  GE+  L+ L
Sbjct: 118 TKEMIACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPDDQIAVIEMGMSMRGEMSRLSEL 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSH 240
           V    AVIT I  +H+      + I   K  I + +  K G +F+N DD+     K++  
Sbjct: 178 VELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDAILNKHKSELR 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299
                 I +FG   + D+     K  +      V ++ K S +   + +G H  +N L+ 
Sbjct: 238 ----HRIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNALVA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V  AIKAL+ +   EG   R +     G  T+ID+SYNA+P SMKA I V
Sbjct: 294 IAVAERHGIEVTEAIKALAGY---EGVSMRQQITDVNG-VTIIDDSYNASPDSMKAGIDV 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   + +  GR+IAVL DM E+G+ S  +H ++   ++   I  + L G     + D   
Sbjct: 350 LCDYNNN--GRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILFGTMAANIGDGFN 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            S  +   +  + +  ++  +L  GD ++ K S        ++ L E +
Sbjct: 408 GSYKLF--KKREEINEYLLKNLKSGDAILFKGSRGMKLNECVDFLKENY 454


>gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/419 (30%), Positives = 194/419 (46%), Gaps = 22/419 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +   I  L
Sbjct: 32  IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVDIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + S+  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A  I T    G     D +L
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKAHRISTFGVGGDVYATDVEL 266

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  + +   +     S  V     G H  QN    +     +   ++  ++ L   
Sbjct: 267 -----LPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGL--- 318

Query: 321 HPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             ++ +G + R   + +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ 
Sbjct: 319 --EQAQGAKGRLNFIQKSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGVKVMVMGDIG 372

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFI 437
           E+G+ S   H DL   L+   + H+   G F   AL+ A   S  V   +T      F+
Sbjct: 373 ELGDSSWQEHYDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAEALPFL 431


>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
 gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
          Length = 468

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 219/468 (46%), Gaps = 12/468 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A +G  +G  P   V G+S D+R+++P + F A+KG  +D HD +  A 
Sbjct: 7   TPQFTPDELAAATRGRWLG-APPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +   P   V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSEAWAAAHPAPPRPALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     ++ +A AKAE++EGL   G   +N DD+   +LK +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA--RMLK-RGVA 242

Query: 242 LGIKTI-YSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            G + + ++ G+ +  D   L    Q  E     + +  + + V   G+           
Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302

Query: 300 LGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +I     D  I + L+   P    G+R R         L+D+ YNANPASM AA+ 
Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAALD 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD 416
           VL  ++     R  AVLGDM E+G      H  L    +   ++ +   G      A   
Sbjct: 360 VLRDLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAA 419

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    ++E +D L  F++  L   DV++VK S      RL+  L
Sbjct: 420 GAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEAL 467


>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 200/451 (44%), Gaps = 34/451 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFG 87
           GI  D+R+    + F A+KG  +D H+F+  AV++GA GL+V   + +         +  
Sbjct: 27  GIGTDTRAQLQGQLFIALKGEAFDAHNFLDKAVEQGASGLLVHEENALIEKLKDKATILL 86

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L AL KL   AR  S A I+ ITGS GKTTTKE     + S    +   GS+NNH 
Sbjct: 87  VPDTLKALQKLGNWARHESSARIVGITGSNGKTTTKEFTAALVGSSMDVHYNKGSFNNHW 146

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL ++P + D  I E+GM+H GEI  L H+  P + V T +  AH+  F  IE++A
Sbjct: 147 GVPFTLLQLPPNKDVAIIEMGMNHAGEITELVHIAEPDVVVCTMVGRAHMEFFGTIEKVA 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI+E          N D++       ++H + +K    F K++   F        S
Sbjct: 207 EAKEEIYEAAGDQTVRIYNLDNT-------QTHNMYVKARDKFPKARILTF-------SS 252

Query: 268 EQSWMEVQLQGKSMEV----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           E    +V L   SM +    +   IG       +   G  ++       ++       P 
Sbjct: 253 EDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLMAAASVGLAVGMTPA 312

Query: 324 EGRGKRYRCALNQGFFTLID---------ESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +       C  N G   L+          ++YNANP SMKA I  +  ++    GR++ V
Sbjct: 313 QVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALIDNMKLLTV--PGRKVGV 370

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETM 430
            G M E+G  S + H +L   +       V+  G    A    L     +++ +   +  
Sbjct: 371 FGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDDADAFAKGLSSAGYKNLALIEKDYK 430

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           D     +   L  GD+ VVK+S      R +
Sbjct: 431 DSSGQDLAGFLKTGDIAVVKASRGTKLERFV 461


>gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
 gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
          Length = 452

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 219/446 (49%), Gaps = 25/446 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +        +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKAGGAGALLVSRPL-----DCDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMAAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + DF + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQ 265
           A AK EI+ GL + G   +N D++  + L  +S  +G + ++ F   + ++DF       
Sbjct: 199 AKAKGEIYSGLPENGIAIMNADNN--DWLNWQS-VIGDRKVWRFSANAADSDFTATNVHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324
            S  +   +Q    S++V+    G H   N L    +     A +  AIKA L+      
Sbjct: 256 TSHGTEFTLQTPVGSIDVLLPLPGRHNIANALAAASLSMAAGAPL-AAIKAGLANLKAVP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  
Sbjct: 315 GRLFPVQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAE 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S++ H+ +        I  V  +G    A+ +A    +  H+++      +    +LV+ 
Sbjct: 368 SEACHLQVGNAAKAAGIDRVLSTGKLSQAISEA--SGVGEHFADKT--ALIARLKALVEE 423

Query: 445 D---VVVVKSSNSCGFYRLINLLLEE 467
                ++VK S S     ++  L E+
Sbjct: 424 QQMITILVKGSRSAAMEEVVRALQEK 449


>gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK115]
          Length = 456

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SEHPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKIVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L   ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTCLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+ +   +    ++   A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIASYAALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 433

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 203/444 (45%), Gaps = 35/444 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           IS D+R I P   FFA+KG  +D + F   A+  GA   V+ N D      ++S     V
Sbjct: 16  ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNGDY-----NVSQKCILV 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L  LA   R +     + +TGS GKTTTKE++   LS    TYA  G+ NNHIG
Sbjct: 71  DDVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+  +   V+  + E+G +H  EI  L  + +P   +IT +  AHL  F G E +  
Sbjct: 131 VPLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGGAEGVKK 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKS------KNADFQL 260
            K E+++ L+ + G IF+N D      + A+     ++   S  G +      +N+ +  
Sbjct: 191 GKGELYDYLKTSKGVIFVNQDSKVLTDMVAERALTDVQYYGSDIGNNISGELLENSPYLK 250

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +WK    +++  VQ Q           G +   N+L  + I        D     LS +
Sbjct: 251 LRWK-IKNEAYHTVQSQ---------LTGAYNMDNLLAAICIGHYFKLSPDEINTGLSGY 300

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +  + A N    TLI + YNANP+SM  AI  + ++     GR++ +LGDM E
Sbjct: 301 QPHNNRSQIVKTASN----TLICDYYNANPSSMFVAIENIGKLPA---GRKVVILGDMFE 353

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE S   H  + +      I      G       + +  +    Y    D +  F +S 
Sbjct: 354 LGEESAVEHESVIQKAMQTAIDERIFIGAEFYKQSELVNATF---YRSVEDAIGAF-KSR 409

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
            V    +++K S      RL++L 
Sbjct: 410 PVKNATILIKGSRGMALERLVDLF 433


>gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
 gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
          Length = 455

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 209/456 (45%), Gaps = 41/456 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N    DSR IA  + F  +KG   DGHDFI  A + GA L +   ++       S P  
Sbjct: 26  LNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFENGAALTLSEKEVA------SHPYI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDDVL A   LA     ++   + A+TGS GKTTTK+ML   LS+  KTY   G+YNN 
Sbjct: 79  LVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTNYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+G  HLG+I  L+ L  P  A++T I  AHL+ F    EI
Sbjct: 139 IGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLIGEAHLAFFKDRSEI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKW 263
           A  K +I +G+ + G +    D      L  K        +  FG+       D   RK 
Sbjct: 199 AKGKLQIVDGMPEGGLLLAPSDSIVDSYLPTKQQ------VVRFGQGAELEVTDLVERKD 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDTAIKALSVF 320
               + +++E   Q   + V     G + A N ++   +     +    +  A + L + 
Sbjct: 253 SLTFKTNFLE---QALDLPVT----GKYNATNAMIASYVALQEGVPEEQIHQAFQNLELT 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             +      ++ A N     ++ + YNANP +MK  +   S I  +  G+++AVL DM E
Sbjct: 306 RNR----TEWKKATNGA--DILSDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKE 359

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMD 431
           +G+ S   H  +   LS   +  V   G  +  L     +     HV+Y       +  +
Sbjct: 360 LGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIGHVYYFKKTADEDQFE 419

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   ++ SL   D +++K SNS    +L+  L E+
Sbjct: 420 AMTKQVKESLGAHDQILLKGSNSMNLAKLVESLQED 455


>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 265

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 135/234 (57%), Gaps = 2/234 (0%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ++I+S+ +  +  FFAIKG + DGH F+   ++K + ++VV  +      +L     
Sbjct: 23  INNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVIVVKNNFKVPKNNLH-KFI 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   + +L   A   RL S+   + ITGS GKTT K ML+  L    KT++   S+NNH
Sbjct: 82  KVRSPIRSLENFAKYQRLTSQGKFVGITGSFGKTTLKYMLSFFLEQYGKTFSSPKSFNNH 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            G+PL+L+  P +  F IFELGMS   EI  L+ ++RP I VIT I PAHL NF  ++ +
Sbjct: 142 FGLPLSLSNTPKNSQFNIFELGMSSSREIDKLSQILRPDIGVITNIGPAHLKNFKNLKAV 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             AKAEI   +++ G I LN DD +F  L   ++   +K I +F KSK A+ QL
Sbjct: 202 CLAKAEIMNHIQENGYIVLNKDDFYFNTLFKIANNKKLKII-TFSKSKKANVQL 254


>gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 456

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 214/443 (48%), Gaps = 33/443 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +    +  +      P   VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEA------PYILVDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A   LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  KAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR 331
           E     + +++     G + A N  M     ++     +TAI +A S       R + ++
Sbjct: 257 ECNFLEQRIDL--PVTGKYNATNA-MIAAYAALQEGVSETAIAQAFSKLELTRNRTE-WK 312

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  
Sbjct: 313 KAANGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGS 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSL 441
           +   L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++ SL
Sbjct: 371 MITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGRVHYFVKNDEKDQFEQLTKAVRESL 429

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
              D +++K SNS    +L+  L
Sbjct: 430 TPADQILLKGSNSMNLAKLVEDL 452


>gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
 gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB056]
 gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB058]
 gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB059]
 gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
          Length = 466

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 206/449 (45%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+   V  G  + +V   + A I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL                QG S   +    G H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSFVRLPFA-GEHNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNANPASMKAAISVLSQISP 365
              ++  +K L     ++ +G + R    Q    L ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKTPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 464

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 227/479 (47%), Gaps = 57/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F +++ A+ G  I          +S D+R I  ++ F A+KG  ++G+ +   A  KG
Sbjct: 4   MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKG 63

Query: 65  AGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A + +V  D V    + I   +  V  V D   AL  LA   + +    +I ITGS GKT
Sbjct: 64  ASICIV--DEVYFKKSEINECT-SVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++T  LS+  K +   G+ NN IG+P  + R+    D  + E+GM++ GEI  +  
Sbjct: 121 TTKDLITSVLSAKFKVFKTEGNLNNQIGLPHMIFRLNNSYDVAVLEMGMNNRGEIHSMAK 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP IAVIT +  AH+ N    E I +AK EI +   K  T+ +N D+     LK    
Sbjct: 181 AARPDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVINSDNDMLSNLKEDRF 240

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRK----WKQCSEQSWME----VQLQGKSMEVVHHG 287
                 I   G  +N+     D ++++    +  C     ME    V + GK   V++  
Sbjct: 241 -----NIRRVGLEENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGK-YNVLNSL 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +     + + MT G +     +++T    + +      +GK+         F +I++SYN
Sbjct: 295 LAVACGRILNMTYGEIREGLKNIETTAMRMEIC-----KGKK---------FNVINDSYN 340

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
           ANP SMKAAI VL         RR+AVLG M E+G+ S   H ++ +         +++L
Sbjct: 341 ANPESMKAAIDVLKNFKSK---RRVAVLGTMGELGDESCRMHEEVGKYAGENGIDILIAL 397

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
              +  +  GF V   K+    S    Y+ET++     ++  +V+GD V++K+S    F
Sbjct: 398 GEYAEDFKRGFQVTN-KNGKCISFDT-YAETLE---FLLKKCIVEGDTVLIKASRVMKF 451


>gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 466

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 226/457 (49%), Gaps = 41/457 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGS 80
           +  ++  S  +     F  ++G + DGH+FI  A+ +GA   +V  D        +   +
Sbjct: 30  ITTVTTASTEVEKNSLFIPLRG-NRDGHEFIGDALSRGASYFLVEEDHPIRKNFDSKERA 88

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +IPV    D L +L KLA   R R    +IA+TGS GKTTTKE+L   L ++++    +
Sbjct: 89  KAIPV---KDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEPVLVV 145

Query: 141 --GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IG+P TL R+       + ELGM+H GEI  LT + +P  A+ITTI  AH+ 
Sbjct: 146 TEKNYNNEIGLPFTLFRISDRTRIVVCELGMNHKGEIARLTQIAKPDFALITTIGTAHIE 205

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                + IA AK E+ EGL K G +F      + ++LK+     G + I       N  F
Sbjct: 206 FLGSQKNIAKAKVEVAEGLVKGGKLFYPDTGEYSKILKSTLRRHGSRLILV---KPNHIF 262

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            + + +           L+ +  E+  +  GY + +N+ + +  +  +    +  +K +S
Sbjct: 263 SVLQKRPSG------FLLEYRDKEIEWNLPGYKLLENLAIAIACLETVGVPTEWILKGIS 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGD 377
            F   +      R  L +G +++I+++YNAN  SM +++ V  Q++   +G+    VLGD
Sbjct: 317 TFKSVDK-----RLNLQKGKYSIINDTYNANYESMLSSLEVTDQLA---DGKEFYVVLGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKD------ALPRSIHVHYSETM 430
           M E+G+ SQ FH +L +  S + N+  ++  G   L +++        PR    H++ T 
Sbjct: 369 MKELGKHSQKFHKELGKKCSEFQNLKGLFTFGTDSLWIREEFVKRTTFPR-FSEHFAGTE 427

Query: 431 DGLFLFIQS---SLVDGDVVVVKSSNSCGFYRLINLL 464
           +GL   ++    ++  G +V+ K+S      R ++ L
Sbjct: 428 EGLVKLVRKFSQTVPKGSIVLAKASRGIQLERFVDSL 464


>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
 gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 217/438 (49%), Gaps = 37/438 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLS 82
           Q F   +S D+R+I     F  +KG  ++GHD++  A++ GA   +      V +     
Sbjct: 21  QSFT-AVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEGQPVPAALPDD 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             ++ V D L AL ++A A R++    +I ITGS GKTTTK++L   LS   +TY   G+
Sbjct: 80  FQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDILASLLSLEGETYKTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNHIG+PLT+  MP    + I E+GMS  GEI  L+ + +P +A++T I  +H+     
Sbjct: 140 YNNHIGLPLTILAMPSTCKYLILEMGMSGYGEIERLSEIAKPDLAIVTNIGESHMEQLGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
              IA AK EI EGL   G +F++ D+   +  K  S       I   G + +AD  +  
Sbjct: 200 RAGIAKAKMEIKEGLSPAGFLFIDSDEPLLDGWKQSS-------IMRVGFN-HADILVEN 251

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---ILTADVDTAIKALSV 319
                +    +  ++G   E+    +G H  +N    + +     ++T+ + T ++ +S+
Sbjct: 252 VAATVD--GYQFDIEGHHFELSL--LGKHNVKNAAYCIAVARKFGLVTSKIQTGLRQISL 307

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                   +  +   N+G   +++++YNA+P SM AAI  L  I P  E +R+ VLGDM 
Sbjct: 308 -----TSMRLEKLTGNKGEL-IVNDAYNASPTSMIAAIDALKAI-PSYE-KRVVVLGDMF 359

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ- 438
           E+G   ++ H  +A+V++   I+HV   G      K     + H+  S T D +  F   
Sbjct: 360 ELGTEEEALHKSVAQVIT-PPITHVLTLGDRA---KWIYEEASHISSSSTFDEMAHFTTK 415

Query: 439 -------SSLVDGDVVVV 449
                  S LVD   V++
Sbjct: 416 QELADHLSKLVDQKTVIL 433


>gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 457

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 211/431 (48%), Gaps = 35/431 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+S+P   V 
Sbjct: 28  INTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQLVVK 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNN 145
           D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G++NN
Sbjct: 84  DTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGNFNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  +  
Sbjct: 144 DIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKW 263
           +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ ++  
Sbjct: 204 VVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSVKNV 255

Query: 264 KQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318
            Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++  S
Sbjct: 256 -QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLEQRS 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  + DM
Sbjct: 314 -----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCVADM 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L   I+
Sbjct: 364 KELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVPLIE 423

Query: 439 SSLVDGDVVVV 449
           + L     VVV
Sbjct: 424 NQLQQNKKVVV 434


>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 468

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 218/468 (46%), Gaps = 12/468 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A +G  +G  P   V G+S D+R+++P + F A+KG  +D HD +  A 
Sbjct: 7   TPQFTPDELAGATRGRWLG-APPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +       V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSEAWAAAHPAPPRAALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     ++ +A AKAE++EGL   G   +N DD+   +LK +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA--RMLK-RGVA 242

Query: 242 LGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMT 299
            G + + ++ G+ +  D  + +    S +    V   G     VH  G+           
Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302

Query: 300 LGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +I     D  I + L+   P    G+R R         L+D+ YNANPASM AA+ 
Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAALD 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD 416
           VL  ++     R  AVLGDM E+G      H  L    +   ++ +   G      A   
Sbjct: 360 VLRDLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAA 419

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    ++E +D L  F++  L   DV++VK S      RL+  L
Sbjct: 420 GAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEAL 467


>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 428

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 204/434 (47%), Gaps = 27/434 (6%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD---------MVASIGSLSIPVFGVDDVLG 93
           F A+ G  +DGHDF+  A+Q G+  VV+  D         ++A  G     ++ V D + 
Sbjct: 2   FLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTVL 61

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A  +LA   R      ++A+TGS GKTTT+E++   L+ +    A  G+ NN +GVPLTL
Sbjct: 62  AYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNENNDLGVPLTL 121

Query: 154 ARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            R+  D D   + E+GM  LGEI  L+   +P +AVIT I  AH+      E IA AK E
Sbjct: 122 LRL-TDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRLGSREAIAQAKCE 180

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I   L+  G + +   D   +   A      +  I   G    A+     W    + +  
Sbjct: 181 ITTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAEA---DWVGQEDPAAG 237

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            V + G ++ +     G H A+N+++ L +   L    +  ++ L V  P  GR +R   
Sbjct: 238 SVVVDGVAVPLPLE--GRHHARNLMLALAVARHLGVGPER-LQQLHVALPG-GRSRR--- 290

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            L  G   L+DE+YNA+P ++ A++ +L+       GRR AVLG M E+G+ S + H  +
Sbjct: 291 -LAVGGIRLLDETYNASPEAVLASLELLAT---QAGGRRYAVLGTMLELGDKSLALHRRV 346

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVK 450
           A      ++  + +          A   +     +   + +     +Q  L  GD V++K
Sbjct: 347 ARRAIELDLDGLLIVDGGAEGEAMAAEAAGMSRLALVPSPEAAAAVLQPWLAPGDTVLLK 406

Query: 451 SSNSCGFYRLINLL 464
           +S S    RLI LL
Sbjct: 407 ASRSVALERLIPLL 420


>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 210/444 (47%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KE     LS    T    G+ NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEXTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPXTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL + G    N D++  + L  +S  +G + ++ F   + N+DF       
Sbjct: 199 AKAKGEIFSGLPENGIAIXNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    S++V+    G H   N L    +   + A +D     L+      G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSXSVGATLDAIKAGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    + A NQ    L+D+SYNAN  S  AA+ VL++      G R+ V+GD  E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSXTAAVQVLAEXP----GYRVLVVGDXAELGAES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442
           ++ H+ + E      I  V   G    A+  A    +  H+++    +  L L I    V
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               ++VK S S     ++  L E
Sbjct: 427 --ITILVKGSRSAAXEEVVRALQE 448


>gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
 gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
          Length = 456

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 217/444 (48%), Gaps = 17/444 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR I     F  +   + DGH ++  A+  GA   +   D   +I   SI V 
Sbjct: 25  ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +L     ++    ++AITGS GKTTTK+M    L++    +    ++NN 
Sbjct: 83  PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +AVIT I  AH+  F   + I
Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G + +N D+    LL  K+  +  + + +FG   N D         
Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNNDMCAMDIVSD 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + ++  +V      ++   + IG +   N L  L + +I    VD   KAL+ F     R
Sbjct: 259 ATKTSFKVA-TWPEVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANR 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +       +    ++ + YN+NP ++K  +    Q+    EG+RI VLGDM E+GE + 
Sbjct: 318 TEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDMLELGEKAA 372

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLF--IQSSL 441
             H +LA+ ++   I  V+L G  +  L + L        +H+ +  D L L   +++ L
Sbjct: 373 EMHSNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNEL 432

Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465
           +  D+V++K+S+      +++ L+
Sbjct: 433 MSDDIVLLKASHGIHLENVVSELI 456


>gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
 gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
          Length = 466

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 205/449 (45%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A I  L
Sbjct: 32  IPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL                QG S  V     G H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSF-VRLPFAGEHNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++  +K L     ++ +G + R   L +     ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFLQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
 gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
          Length = 504

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 203/444 (45%), Gaps = 30/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSRS      F A+KG  +DG+ F   A+QKG    VV+    A  G     +  VD
Sbjct: 82  VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAGDARFIL--VD 139

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA A R R    +I ITG+ GKTT+KE+++  LS     +A   +YNN +GV
Sbjct: 140 DALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNNDVGV 199

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + D  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 200 PRTLLGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLITNVGRAHLQGFGSFEGVKRT 259

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ L+   G +FLN  ++    +  +        I ++G+   AD Q  +   C+ 
Sbjct: 260 KGELYDFLKAHGGLLFLNESNADLTEMAEQRE---FDRIVTYGQDSTADVQ-GQVVSCAP 315

Query: 268 --EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             + +W  +   Q    + EV    +G +   NML  + +             AL  + P
Sbjct: 316 FLKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVTAQQVNHALENYIP 375

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCE 380
           +  R +    A N+    LI ++YNANP+SM AAI    L Q+       ++A+LGDM E
Sbjct: 376 RNNRSQLTETAHNR----LIVDAYNANPSSMSAAIENFRLMQVE-----NKMAILGDMRE 426

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE S   H  +   L    I  VWL G      + A  +   V   +        I+  
Sbjct: 427 LGEASGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRKFRDVEEVKAE------IERR 480

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
             +G  +++K SN    + L  LL
Sbjct: 481 RPEGHYILIKGSNGIKLFELPALL 504


>gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
 gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27]
 gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma
           whipplei TW08/27]
 gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
          Length = 464

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 218/443 (49%), Gaps = 26/443 (5%)

Query: 27  VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +NG + IDSR+I+  + F A  G  +DGH+F+  A Q GA L +V       +  + +P 
Sbjct: 28  INGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIV-----TRVQEIDLPQ 82

Query: 86  FGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V +V  A++ +A   +L   R   T+I ITGS GKTTTK +L   LS    T A  G+
Sbjct: 83  LLVGNVTEAMHAIA-GFKLCLSRDTITVIGITGSNGKTTTKSVLAYVLSKFGNTVATHGN 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN IG P+T++R+     + + E G    G+I  L  +  P IAV+ +   AH+     
Sbjct: 142 QNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKIAVPDIAVLLSAGHAHVEKSGS 201

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E + S KAE+   L +   + LNYDD        +   L +   Y FG  K A F+   
Sbjct: 202 LESVCSMKAELARDLPEGSKVLLNYDD-------PRIARLSVGNRYYFGTDKRAHFRASH 254

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +    ++   V  Q  S+EV    IG H   N+L  L  + +L  D +   + +S  +P
Sbjct: 255 VETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALSTLVLLGFDAEVCARYISEVNP 314

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR +     +  G F++I ++YNA+  S+K A+  L  +    + RRIAVLG + +MG
Sbjct: 315 IDGRMQY----IPLGDFSIIHDAYNASFESVKCALDSLVVLGSLAK-RRIAVLGRIHDMG 369

Query: 383 ELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQ 438
           EL+Q  +  L +     +I+  V +S   +  +   L + +    + + E ++     I 
Sbjct: 370 ELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAKGVPNKEIVWFEDLETAKHEIF 429

Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461
                GD+V+ K+SN+  F  L+
Sbjct: 430 DLFSPGDIVLFKASNAENFSSLV 452


>gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK72]
          Length = 456

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 214/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYLL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL + G + +  D    E L           +  FG   +AD  L + ++       
Sbjct: 205 IADGLRENGLLIVPADKIVNEFLPTGCD------LVRFG--PDADIFLTRLEERKNSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++V  A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  ++S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           furnissii NCTC 11218]
          Length = 453

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 218/449 (48%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+RSIA    F A+ G  +D H+F   AV  GA  ++V   +      +++P  
Sbjct: 24  IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERAL-----DVNVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +   AL +L      +     +AITGS GKTT KEM+   LS+  +     G++NN 
Sbjct: 79  VVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R     D+ + ELG +H+GEI +   LV+P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRK--W 263
             AK EI++GL    T  +N D     L ++    L  K++ +F  ++ +ADF  R    
Sbjct: 199 KRAKGEIYQGLSAGNTAVVNLDSQGGALWQS---VLADKSVKTFSVTEHSADFYPRDIVL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E S++ V   G  + V    IG H   N L    +   + A +      L+  H  
Sbjct: 256 NAAGEASFVLVTPIG-DVAVKLGIIGKHNVGNALAASALAIEMGATLADIQHGLA--HLS 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+     L     TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+GE
Sbjct: 313 KVKGRVDVTELTD-HITLIDDSYNASVPAMKAAVDLLGGFS----ATRWLILGNMAELGE 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +   +V   G     + D        H++   D + +FI+  L  
Sbjct: 368 ESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDVCHGR---HFASHQD-MIMFIEQHLEQ 423

Query: 444 GD----VVVVKSSNSCGFYRLINLLLEEF 468
                 V++VK +NS G  +++  L E++
Sbjct: 424 QPDRTHVLIVKGANSAGMSKIVAALKEKY 452


>gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
 gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
          Length = 457

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 211/446 (47%), Gaps = 33/446 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I P + F  +KG   DGHDFI  A + GA + +   ++         P   V+DVL
Sbjct: 32  DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEQEVADH------PYILVEDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A   LA     ++   + A+TGS GKTTTK+ML   LS+  KTY   G+YNN IG+P T
Sbjct: 85  TAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L  P  A++T +  AHL+ F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKLQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +G+EK G++ L   D   E      +    + +  FG    A+ ++ +  +  +   +
Sbjct: 205 IADGMEK-GSLLLAPADPIVE-----DYLPTEQKVVRFGPG--AELEITELTERKDSLTL 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS--ILTADVDTAIKALSVFHPKEGRGKRY 330
           +     KS+++   G  Y+    M+ +   +   +    +  A + L +   +      +
Sbjct: 257 KANFLEKSLDLPVTG-KYNATNAMIASYVALQEGVTEEQIGQAFQNLELTRNR----TEW 311

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + A N     ++ + YNANP +MK  +   S I  +  G+++AVL DM E+G+ S   H 
Sbjct: 312 KKAANGA--DILSDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKELGDQSVQLHN 369

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFIQSSL 441
            +   LS   +  V   G  +  L     +     HV+Y       +  + +   ++ SL
Sbjct: 370 QMILSLSSDALDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMVKQVKESL 429

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
              D +++K SNS    +L+  L  E
Sbjct: 430 GAHDQILLKGSNSMNLAKLVESLENE 455


>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
 gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
          Length = 452

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 216/465 (46%), Gaps = 25/465 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG S       F++ IS D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATQGTSAHTDNIKFLD-ISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A G +V     V  I  +      VD+ L A   LA   R R    ++AITGS GKTTTK
Sbjct: 63  ATGAIVEKGRAVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L +         +YNN IG+P TL R+  + +  + E+GM  LG+I  L  +  
Sbjct: 118 EMVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +    
Sbjct: 178 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG-- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            KTI ++G  +NA       +   +      +   +  ++    IG H   + L  +   
Sbjct: 236 -KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +T  K LS F    G   R      +    L D +YNANP+SM  AI  L Q+
Sbjct: 294 RVLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419
                 R+IA+LGDM E+G+ S+  H ++ ++L+    S V+  G    F     K A  
Sbjct: 350 EGK---RKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +        M   +  I+     GDV++VK S      R++  L
Sbjct: 407 TAFRCKSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448


>gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 447

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 211/430 (49%), Gaps = 31/430 (7%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           ++D R   P   F A  G + DGHDF+  A + GA  V+            S+P   V D
Sbjct: 30  ALDGRKAEPGGLFVAFAGEYADGHDFVDQAARAGAAAVL-------GTRPTSLPTVVVQD 82

Query: 91  VLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              AL +LA  V  RLR   T++ +TGS GKT TK+++   LSS   T A  GS NN +G
Sbjct: 83  AREALQRLAKHVVDRLRPGLTVVGVTGSQGKTGTKDLIAAVLSSAAPTVATAGSLNNELG 142

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+ R   +  F + E+G  H+G+I  LT LV P +AV+  +  AHL  F     IA 
Sbjct: 143 VPLTMLRADAETRFLVLEMGARHVGDIAALTDLVAPDVAVVLNVGRAHLGEFGSRGAIAK 202

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQC 266
            KAE+ +GL   GT  LN DD       A  H L    + +FG++++AD Q+      + 
Sbjct: 203 TKAELVQGLAPGGTAVLNADDPRV----AAMHTLTDGPLLTFGRAEHADVQVLYLVLDRL 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S+       +++ V    IG H + N    +         ++ A KAL+        
Sbjct: 259 GRPSFTVRTADARAV-VTLPLIGAHQSLNAAAAVTAGLAAGVPLEAATKALATASL---- 313

Query: 327 GKRYRCALN--QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             ++R  L    G  TL+++SYNANP S +AA+  L+ I      RRIAVLG+M E+G  
Sbjct: 314 -SKWRMELRGLAGGATLLNDSYNANPDSTRAALDALAAIE---AARRIAVLGEMRELGPS 369

Query: 385 SQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +++ H  +    +   +I     +  H +A   A PR++ +  +   D    +++  L  
Sbjct: 370 TETEHRAIGRYAAHRADIILAVGAPAHPIATA-AGPRALTLPDN---DAALAWLREHLAA 425

Query: 444 GDVVVVKSSN 453
           GDVV+VK+S 
Sbjct: 426 GDVVLVKASR 435


>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium cylindroides T2-87]
          Length = 453

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 216/469 (46%), Gaps = 29/469 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++   +    +G      + G+ IDSR I     +  + G   DGH FI   +QKG 
Sbjct: 5   TIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSVIQKGV 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         I    VDD L AL  LA A        +I +TGS GKT+ K+M
Sbjct: 65  KATLWQKDHTPY--PEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSNGKTSCKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    S  KKT    G+ NN IG+PLT+  +  DV+  I E+GM + GEI FLTH+ RP 
Sbjct: 123 LYSIFSQEKKTQKTQGNRNNEIGLPLTVLDLDKDVEVAILEMGMENKGEIDFLTHIARPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALG 243
           +++ITTI  AH+ N  G ++IA AK EI E L K G +FL YD    E+ +   +     
Sbjct: 183 VSIITTIGSAHMENLGGKKQIAQAKLEILENL-KPGGLFL-YDKESPEIQECLLEMDIDP 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K + SFG   N D  +      +E   +E      + ++  + +G   A+N L  + + 
Sbjct: 241 SKRLVSFG--FNGDISIISSIDYTENG-IEFYCSSLTDKITLNALGDFQAKNALPCIYVA 297

Query: 304 SILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLS 361
                 +D  I   S+    K+    + R AL +     +ID++Y +NP S KAAI  L 
Sbjct: 298 ------LDQKISTSSILKGLKDLEMTKMRTALLKVHDAKIIDDTYKSNPESAKAAIDTLM 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDA 417
           ++      + IAVL DM ++G      H  +       N+  V+    LS + + A    
Sbjct: 352 KVQAK---KHIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYATGPLSKYTIKAC--- 405

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +I   + ET D +   ++  L +   +++K S +     +++ L E
Sbjct: 406 --TNIESKWFETKDEIVEELKHLLNEDCAILIKGSRAMHMDEIVDKLKE 452


>gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
 gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
          Length = 485

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 149/473 (31%), Positives = 227/473 (47%), Gaps = 41/473 (8%)

Query: 23  PQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G V    +  DSR + P   F A+ G H DGHD+   AV  GA LV+   ++  + G 
Sbjct: 25  PHGLVVAGAVVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVLGARELTGADGR 84

Query: 81  LSIPVFGV--DDVLGALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIAL 130
           L   V     +  LG L +  V  RLR+ +         ++ ITGSVGKTTTK++L    
Sbjct: 85  LLPVVVVPDVERALGDLAR-EVLVRLRAASLEPGGPGLRVVGITGSVGKTTTKDLLAQLC 143

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S   T A + S+NN IG+PLT+ R      F + E+G S  G + +LT +  P +AV+ 
Sbjct: 144 GSAGPTVAPVRSFNNEIGLPLTVLRADESTRFLVLEMGASGPGHLTYLTDIAPPDVAVVL 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL  F GIE +A+AK+EI +GL   G   LN DD     ++    AL    + +F
Sbjct: 204 VVGHAHLGGFGGIEAVATAKSEIVQGLLPDGVAVLNADDPRVLAMR----ALAPGDVVTF 259

Query: 251 GKSKNADFQLRKWKQCSEQSW-----MEVQ--LQGKSMEVVHHGIGYHMAQN---MLMTL 300
           G S  A  Q+R      ++S      +E +     +++ V    +G H   N      T 
Sbjct: 260 GASTGA--QVRAHDVVVDRSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNALAAAATG 317

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V +   +V   + A     P      R          T+ID+SYNANP SM+AA+  L
Sbjct: 318 LAVGLTLDEVAVGLGAADALSP-----HRMHVVERPDGVTVIDDSYNANPDSMRAALKAL 372

Query: 361 SQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + ++  G  RR +AVLG+M E+G+ ++  H  +  ++   N+    + G    A++D   
Sbjct: 373 AVLA--GRDRRSVAVLGEMLELGDEAREAHDAIGRLVVRLNVGLTVVVGEGARAIRDGAN 430

Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                   V  ++ ++    F+   L  GDVV+VKSS   G ++L +LL+ E 
Sbjct: 431 HEGSWGDEVVLADDLETAARFLDEELRPGDVVLVKSSYGAGLWQLGDLLVGEV 483


>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
 gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
          Length = 470

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 192/406 (47%), Gaps = 43/406 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + + HD  +A+  H      +G  + +  D+R++AP + F A++G  +DGHDF+  A + 
Sbjct: 1   MMSLHDATRALACHGARATGEGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+    A      +P+  VDD   AL  LA A R R    +I +TGS GKTT K
Sbjct: 61  GAAAAMVDAAWSAGKADAGLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVK 120

Query: 124 EMLTIALS--------SIKKTYACIGSYNNHIGVPLTLARMPVDVDF---GIFELGMSHL 172
           EM    L           +   A  G+ NN IG+PLTL  +    DF    + E+GM+H 
Sbjct: 121 EMCAAILRVQASRDGFGEESVLATRGNLNNDIGMPLTLLEL---RDFHRAAVIEMGMNHP 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--- 229
           GEI +L+ L +P +A++     AHL     ++E+A  K  I+EGL   G   +N DD   
Sbjct: 178 GEIGYLSALAQPTVALVNNAQRAHLQGMGSVDEVAREKGAIYEGLGGAGVAVINADDPHA 237

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHH 286
            ++  L A       + I +FG    AD   R    C+ +   S +E+ +    ++    
Sbjct: 238 GYWRSLNAG------RPIVTFGIDHPADVSAR----CTLRGLGSRLELDIPQGKIDFALQ 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLID 343
             G H  +N L            ++   + L+ F    GR +R    R AL      ++D
Sbjct: 288 VPGLHNVRNALGAAAACLAAGVPLEAVAEGLAGFAGTRGRLQRRSGPRGAL------ILD 341

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +SYNANP S++  I VL+ +  H       VLGDM E+GE S   H
Sbjct: 342 DSYNANPDSVRVGIDVLAAMPGH----TWLVLGDMGEVGETSAQVH 383


>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 460

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 224/454 (49%), Gaps = 49/454 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  K +  
Sbjct: 83  PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYKVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +P +AVIT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258
               +EIA AK EI + L + G    N D+        K+ ++  KT   FG+    D  
Sbjct: 203 LGSRKEIAKAKLEIIDWLRENGLFLYNGDEPLLS-RNNKTSSVNCKT---FGEKDTNDLF 258

Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               QL ++    K    +   +V L GK           H   N ++ + +       +
Sbjct: 259 PTNVQLDEYGVHFKLNHSKIQYDVPLHGK-----------HNIFNTIVGIAVGQFYKVPI 307

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   +AL   +  +    R++    +  FT+I++++NA+P+SMKAAI  L +++ +   +
Sbjct: 308 EKIQEALQQINITK---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KK 362

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           ++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H    ++ 
Sbjct: 363 KMIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYHTGKIKSF 422

Query: 431 DGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
           D      +  L      DVV++K S       ++
Sbjct: 423 DNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIV 456


>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 460

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 186/367 (50%), Gaps = 19/367 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR I P E F A+ G  +D HDF+    Q GA  V+V + +  ++ +L   V  V 
Sbjct: 29  VNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAAVIV-SRLPENVEALGCGVIEVP 87

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA A R      +I ITGS GKT+TK+++   L    +  A +G++NNHIG+
Sbjct: 88  DTLLALQQLARAYRELLNPLVIGITGSNGKTSTKDLVAAVLRKKYQVCATLGNFNNHIGL 147

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+ RM    +  + E+GM+H GEI  L  + RP  A+IT I  AH+      E IA  
Sbjct: 148 PLTILRMEEGDNCAVLEMGMNHHGEIAVLAGIARPDAAIITNIGVAHIEYMGSREGIAQE 207

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +   +   G + LN +D F   + A+SHA  +      G     D      +  +  
Sbjct: 208 KGTLAAAVPHGGVVVLNANDDFSSSIAARSHARVVLAGVGEG-----DVVATLTESGARG 262

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEG 325
           S+  +   G+ +  VH  + G HM  N  +   +     ++  D+  A+  + +      
Sbjct: 263 SFFSLNFDGRVVVAVHLPVPGEHMVGNAALAAAVGWHFGVVPQDIAAALGEVQLTK---- 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R +    +G  T++D+SYNANP SM+A +  L+ +     GRR+AVLG M E+G  +
Sbjct: 319 --GRVQVKFWRG-VTVLDDSYNANPDSMRAGLKTLAALQI--PGRRVAVLGRMGELGPHA 373

Query: 386 QSFHIDL 392
           +S H ++
Sbjct: 374 ESSHREV 380


>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
 gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
          Length = 470

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     ++  G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMNSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 384 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 MNGNEWILVKGSYGMGLKDVVENLI 468


>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
          Length = 466

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 212/434 (48%), Gaps = 19/434 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + IDSR+++P   F  I G   DGH+F + AV KGA  V+ +  +         PV 
Sbjct: 26  IEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSKGAAAVLADRPLAGL--PEGTPVL 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D + AL KLA A R R++A ++A++GS GKTT KE+    L+ +  T     ++NN 
Sbjct: 84  LVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVKELTAAILAKVGPTAKNFKNFNNK 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PL++          + ELG+S  GE+  L  +  P +AVI  + PAHL     +  +
Sbjct: 144 IGLPLSMLEAGETDRLWVMELGISAPGEMAPLAAIAEPDVAVIHNVGPAHLEALIDVAGV 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A+ K+ +F  L   G    + D   +  L A + A+         K  +A ++ +     
Sbjct: 204 AAEKSRLFAALRPGGVALASMD---YPELWAAAKAVRPDVRGMSVKGGSAPYRAKYLGAL 260

Query: 267 SE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKE 324
           SE +    ++L G  +EVV    G H A+N+L       +L A  +     L S   P++
Sbjct: 261 SEGRGRFFLRLDGLELEVVTPLTGGHFAENILAAAASARLLGATEEQIATGLESAVMPEQ 320

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGE 383
               R+ C    G +TLID++YNANP SM+ AI+  ++ +   +G+ +  VLG+M EMG 
Sbjct: 321 ----RFFC-RRHGCYTLIDDTYNANPLSMRRAIATAAEAA---QGKPLVLVLGEMREMGA 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SS 440
            ++  H  L E  +      V+  G H  A+ + L R  +      +D   +F Q   S+
Sbjct: 373 QAEDEHHKLGEEAAASGAKAVFYHGGHAQAVGEGLARKGYAGLFAVVDTPEMFTQTVASA 432

Query: 441 LVDGDVVVVKSSNS 454
            + G V + K S S
Sbjct: 433 GLRGGVYLFKGSRS 446


>gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 459

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 144/480 (30%), Positives = 221/480 (46%), Gaps = 39/480 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           L +F ++  A+QG  +      +GF +G+S DSR++ P++ F  ++G H DGH F+  A+
Sbjct: 2   LLSFDEVCAAVQGARVCDARGARGF-DGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEAL 60

Query: 62  QKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAIT 114
           QKGA   +++       + VA           V D L AL  LA     +  A I I IT
Sbjct: 61  QKGAVATLIDQRYPHAGEYVAWCTRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGIT 120

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTT KEM     S   +  A  G+ N+ IG+P +L  +  + + GIFELGM+  GE
Sbjct: 121 GSSGKTTVKEMARAVFSERYRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGE 180

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +R L  ++ PH A+IT +  AH+      + IA  K EIF    +    F+  DD++   
Sbjct: 181 MRTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVP-DDAYRVF 239

Query: 235 LKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           L    +  G   +Y  G    A    D  LR  +   +  W+ V L            G 
Sbjct: 240 LSNIPY--GRVVVYDQGGRGLATEVIDEGLRGSRVLYQGRWIRVPLP-----------GV 286

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A+N L  + + + +    +   + +    P  GR     CA      T + + YNANP
Sbjct: 287 HNAKNALAVIALAAQVGLPAEEIQRGMERVKPPFGR-SHVVCA----SLTFLLDCYNANP 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            SM AA+ + + IS      ++ VLGDM E+G  +   H  +  + +  +   V++ G  
Sbjct: 342 DSMAAALHLCAHISAVS---KVYVLGDMGELGVTAAEAHYRVCVLAAASDARAVYVFGPE 398

Query: 409 FHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           F     K +  R  ++    E +  L   + + L  GD V+VK S S    RL  LL +E
Sbjct: 399 FCRAVRKVSWGRKRVYAFALEELSALQETLDAQLRRGDFVLVKGSRSVALERLEPLLRKE 458


>gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
 gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
          Length = 464

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 192/380 (50%), Gaps = 31/380 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  IS D+R    +  FFA+KG  +D HD++  A+++G   +VV  ++     ++++P  
Sbjct: 25  VENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVEREL-----AVNVPQI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139
            V+D   AL +LA   +       +A+TGS GKTT KEM    L   +K  AC       
Sbjct: 80  IVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKIL---QKVTACEDQVLYT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN +GVPLTL R+  +  F + ELG +H+GEI + T + +P   ++  +A AHL  
Sbjct: 137 FGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEG 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF---GKSKN- 255
           F  +  +A AK EI+ GL+  G   +N    + E  K     +G   + SF   G+ K+ 
Sbjct: 197 FGSLAGVAQAKGEIYRGLKAGGKAIVNLAHYYPEWQK----EIGDHELQSFCYTGEDKDS 252

Query: 256 -ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            ADF     +     S   +      +E+    +G H   N L    +   + AD+ TA+
Sbjct: 253 YADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSNALAATALAMAVGADL-TAV 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           KA  +      +G+ Y   + +     ID+SYNAN  SMK+A+SVL Q        RI V
Sbjct: 312 KA-GLEQRSAVKGRLYPIEIKENVL-FIDDSYNANVDSMKSAVSVLKQYPAF----RIFV 365

Query: 375 LGDMCEMGELSQSFHIDLAE 394
           +GDM E+G+ S + H ++A+
Sbjct: 366 VGDMAELGKDSPACHQEVAD 385


>gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Pantoea ananatis AJ13355]
          Length = 452

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 188/387 (48%), Gaps = 25/387 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ++ D+R +     F AI G  +D HDF   A+ KG   ++V+  +      +S+P  
Sbjct: 24  LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVSKHL-----PVSVPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  KLA   R ++ A ++A+TGS GKT+ KEM    L    +T    G+ NN 
Sbjct: 79  VVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCGETLHTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVP+TL R+  +  + + ELG +H GEI + T LVRP  A++  +A AHL  F  +E +
Sbjct: 139 FGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTDLVRPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EIF GL   GT  LN D + +   +   H    KT++ F  ++ + DF     + 
Sbjct: 199 AKAKGEIFYGLPARGTAILNADSNDWPRWQENLHG---KTVWRFSPQAADCDFGAHDIRI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +   +       +++    G H   N L    +   + A +      L       G
Sbjct: 256 RQDGTHFVMHTPRGEADIILPLPGRHNIANALAAAALALSVDAPLSAVQAGLKRLQSVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R + +Q    ++D+SYNAN  SM AA  VLS++     G R+ V+GDM E+G+ S
Sbjct: 316 RLFPVRLSEHQ---LILDDSYNANVGSMVAAAQVLSEMP----GYRVMVVGDMAELGDES 368

Query: 386 QSFHID---------LAEVLSLYNISH 403
           + FH +         L  VLS    SH
Sbjct: 369 EKFHREVGLAAKAAGLDRVLSTGQFSH 395


>gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
 gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 459

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 218/450 (48%), Gaps = 25/450 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +     F  ++G   DGH ++  A   GA   +  +D    I   + P+ 
Sbjct: 26  VTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTNGAVASLWASDH--EITDQTHPLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            V D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KTYA   ++
Sbjct: 83  VVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVAKTYA---NF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV P IAVIT I  AH+  F   
Sbjct: 140 NNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTR 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI  GL++ GT+  N D+    LL+ +   L  + +  FG+  + +      
Sbjct: 200 DKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLAQRQM-RFGRQLSNNLYATSV 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                Q    V  +    E     +G +   N L  + +  IL        +AL+     
Sbjct: 256 HDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELT 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R +  +    +    ++ + YN+NP + K  +  +++ +P   GRRIAVLGDM E+G+
Sbjct: 315 ENRAEWVKGKNGE---QILSDVYNSNPTAAKEVLKTIAE-TPVA-GRRIAVLGDMLELGD 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFI 437
            +   H  LAE +    I+ V+L G  +  LKD L         IH + +  +  L   +
Sbjct: 370 AAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADL 429

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++L   D+V++K+S+      ++  L  E
Sbjct: 430 TATLTGEDIVLLKASHGIHLEEVLTALKAE 459


>gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2866]
          Length = 457

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  VVV  +      S+ +P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVAQGAVTVVVQQEN----SSILVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 466

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 182/385 (47%), Gaps = 21/385 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +   I  L
Sbjct: 32  IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVDIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + S+  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A  I T    G     D +L
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKAHRISTFGVGGDVYATDVEL 266

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  + +   +     S  V     G H  QN    +     +   ++  ++ L   
Sbjct: 267 -----LPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGL--- 318

Query: 321 HPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             ++ +G + R   + +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ 
Sbjct: 319 --EQAQGAKGRLNFIQKSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGVKVMVMGDIG 372

Query: 380 EMGELSQSFHIDLAEVLSLYNISHV 404
           E+G+ S   H DL   L+   + H+
Sbjct: 373 ELGDSSWQEHHDLGRDLAELPLDHI 397


>gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
 gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
          Length = 464

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 200/401 (49%), Gaps = 32/401 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q ++G  +G   +  V  IS D+R    +  FFA+KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLKGKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
               L   +K  AC        G+ NN +GVPLTL R+  +  F + ELG +H+GEI + 
Sbjct: 119 TAKIL---QKVTACEDQVLYTFGNLNNDLGVPLTLLRLIPEHKFAVVELGANHIGEIAYT 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K  
Sbjct: 176 TEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIVNLAHYYPEWQK-- 233

Query: 239 SHALGIKTIYSF---GKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +G   + SF   G+ K+  ADF     +     S   +      +E+    +G H  
Sbjct: 234 --EIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNV 291

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   + AD+ TA+KA  +      +G+ Y   +       ID+SYNAN  SM
Sbjct: 292 SNALAATALAMAVGADL-TAVKA-GLEQRSAVKGRLYPIEIKDNVL-FIDDSYNANVDSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           K+A+SVL Q        RI V+GDM E+G+ S + H ++A+
Sbjct: 349 KSAVSVLKQYPAF----RIFVVGDMAELGKDSPACHQEVAD 385


>gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
 gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
          Length = 449

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 220/463 (47%), Gaps = 25/463 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++ +A  G  +G   Q  ++ +S DSR I  Q  F A+ G  +D HDFI    ++GA  +
Sbjct: 5   EIAKACDGRLVGADCQ--ISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGATAL 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V+ ++       ++P   V D   AL  +A            A+TGS GKTT KEML  
Sbjct: 63  LVSKEV-----DTTLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEMLAS 117

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+   +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T L +P++A+
Sbjct: 118 ILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQPNVAL 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  IA AHL  F  IE +A AK EIFEGL++ G    N D +    L   S     K + 
Sbjct: 178 VNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENGIAIYNLDSNG---LPKWSSLFEGKQVV 234

Query: 249 SFGKSKN-ADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           SF  + + ADF     +     E S+     +G S++V    IG H   N +    +   
Sbjct: 235 SFAMNDSCADFYASNIEVNAIGEPSFQLNTPKG-SIQVSLGIIGKHNVANAVAAAALAIQ 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             + ++   + L      +GR      A       +ID++YNA+  +MKAA+ +L     
Sbjct: 294 ANSSLNDIQQGLQELGSVKGRVAVETLASG---LKVIDDTYNASVPAMKAAVELLGGF-- 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +G+R  VLG+M E+GE S + H ++ E  + Y    V   G     + + L    H  
Sbjct: 349 --KGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISE-LCNGRHFE 405

Query: 426 YSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
               ++  +L  +  L+  +   V+VK +NS     +++ L E
Sbjct: 406 TRSDLNA-YLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 447


>gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 452

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 218/444 (49%), Gaps = 23/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ D+R +     F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  IEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKL-----DIDLPQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R + +  ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  VVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + ++ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTHEHEYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL   G   +N D++  + L  +S  +G +  + F   + N+DF       
Sbjct: 199 AKAKGEIYTGLPDDGIAIMNADNN--DWLNWQS-IIGSRKTWRFSPNAANSDFSATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324
            S  +   +      +EV+    G H   N L     +S+       AIKA L+      
Sbjct: 256 TSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAA-ALSMAVGASHAAIKAGLANLKAVP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR    + A N+    L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G+ 
Sbjct: 315 GRLFPIQLAENK---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMAELGDE 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S++ H+ + E      +  V  +G    A+ DA    +  H+++    L   +++ + + 
Sbjct: 368 SEACHVQVGEAAKAAGLDRVLSAGTLSKAISDA--SEVGEHFADK-SALIERLKALITEK 424

Query: 445 DV--VVVKSSNSCGFYRLINLLLE 466
            +  V+VK S S     +++ L E
Sbjct: 425 QIVTVLVKGSRSAAMEEVVHALQE 448


>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 457

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 26  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     ++  G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMNSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455


>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 457

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 26  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     ++  G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMNSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGDAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455


>gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 455

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 208/444 (46%), Gaps = 19/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I+    F  IKG   DGHDF+  A++ GA   +             I V 
Sbjct: 24  ITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGHPNK--PEGIAVL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A+  LA     +   T++ ITGS GKTTTK+M+   L+     Y    ++NN 
Sbjct: 81  EVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M    +  + E+GM   G++  L+ L RP +AVIT I  AH+  F   ++I
Sbjct: 141 IGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L++ G    N D    E L A+  A   +   +FG + +        +  
Sbjct: 201 ADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLSQDKSTFGFADSDSIHASDLRST 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
              S+ ++   G   E     IG H   N +  + +V     + D  I A L+ F P   
Sbjct: 257 MHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFVPTAN 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +    +   + I   YN+NP ++KA  +   Q+     GRRIAVL DM E+G  S
Sbjct: 314 RMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440
              H  LA  L    I+ ++L G  +  L  AL      +++H +  + M  L   ++S 
Sbjct: 371 ADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQNLHYYPEDEMSHLIDDLKSD 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           +   D+V++K S+     R+++ L
Sbjct: 431 IHSQDIVLLKGSHGMHLERVLDRL 454


>gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 456

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 211/447 (47%), Gaps = 29/447 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A +KGA        +         P  
Sbjct: 26  LNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEKGAAATFSEHPIEGK------PYL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A   LA     + +  +IA+TGS GKT+TK+M+   L++  KTY   G+YNN 
Sbjct: 79  LVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNYNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP + +  + E+G  H+G+I  L+ + +P IAV+T +A AHL  F   E+I
Sbjct: 139 IGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIAQPRIAVLTIVAEAHLEFFGSREKI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +I +G++  G I L   D   +      +    + +  FG+ +    +  K  + 
Sbjct: 199 AQGKMQIVDGMDSHG-ILLAPGDPIID-----PYLPDNQMVIRFGEGEEIFVKDIKEDKN 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S      V  Q  ++ +     G + A N ++   +  +L    +  ++AL      + R
Sbjct: 253 SLTFTTNVLDQAVTLPLS----GKYNATNAMIAAYVGKLLAVSDEDIVEALESVQLTKNR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + ++ A N     ++ + YNANP +M+  +   S I  + +G++IAVL DM E+G  S 
Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMQLILETFSNIPNNPDGKKIAVLADMKELGPDSV 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY---SETMDG---LFLFI 437
           S H  L   LS   I  +   G  +  L     +     HV++    E +D    L    
Sbjct: 366 SLHSKLIMSLSPEKIDTLIFYGQDIQELSQLASQMFPIGHVYFFKKDEQLDQFEELCQLT 425

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  L   D +++K SNS    RL+  L
Sbjct: 426 KEKLGQNDQILLKGSNSMHLDRLVEYL 452


>gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Erwinia sp. Ejp617]
          Length = 452

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 206/443 (46%), Gaps = 25/443 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R       F A+KG  +D HDF+L A+  G   ++V+  +   +  + +      
Sbjct: 27  VTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVSKRLPVDVSQVVVA----- 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +S A I+A+TGS GKT+ KEM    L    +T    G+ NN IGV
Sbjct: 82  DTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+     + + ELG +H GEI + T LVRP  A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLKPQHRYAVIELGANHQGEIAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268
           K EIF GL   GT  +N +   +   +   H    KT++ F   + ++DF        ++
Sbjct: 202 KGEIFSGLPLNGTAIINGESHDWPHWQQALHG---KTVWRFSPGQADSDFYASDVIISAQ 258

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +      ++V     G H   N L    +   + A +    + LS      GR  
Sbjct: 259 GTHFILHSPQGDVDVTLPLPGRHNIANALAASALALSVGAPLSAVRRGLSTLKAVPGR-- 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +  AL+     L+D+SYNAN  SM AA  VL+ +     G R+ ++GDM EMG  +   
Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGM----PGYRVMIVGDMAEMGAEAAEC 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444
           H  +   +    I  V  +G     + DA    +  H+++        + L  Q   +  
Sbjct: 372 HRQVGNAIRHAGIDKVLSTGLLSHGISDA--SGVGEHFADKAALGARAIELLAQHQHI-- 427

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
             ++VK S S    +++ +L E+
Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449


>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 458

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 189/380 (49%), Gaps = 26/380 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+RS+     F A+KG  +DGHDF+L AV KGA  VVV      +  +L +PVF V 
Sbjct: 31  VYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAKGAAGVVVAARE-ETFAALPVPVFAVP 89

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A   LA   R R    +IA+TGSVGKT+T++M+   LS   + +    ++NN IG+
Sbjct: 90  DTLRAYQALARFHRRRFALPVIAVTGSVGKTSTRQMIASVLSQKLRVWQTEKNFNNEIGL 149

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+GM   G+I  L  +  P I V+T +  +H+      E IA A
Sbjct: 150 PKTLLGLTAEHEACVVEMGMRGPGQIAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKA 209

Query: 210 KAEIFEGLEKTGTIFLNYDD----SFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKW 263
           K E+   L  TGT  LN DD    +  +L + K   +   +      G+ +  D  L   
Sbjct: 210 KGELPAALPATGTAVLNQDDWRVAAMAKLCRGKVIGYGTSVGAAVRAGEIQTDDKGLSFI 269

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +C +Q++        ++ V    +G H   N L  +    +L        K L+ +   
Sbjct: 270 CRCFDQTFR------ATVPV----LGKHHVYNALAAVATARLLGLSETQMCKGLAAYA-- 317

Query: 324 EGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              G   R  L + G +T I+++YNANPASM+ A+  L+ +      ++IAVLG M E+G
Sbjct: 318 ---GVPMREELVHVGPYTFINDAYNANPASMEEAVQTLAAVKKE---QKIAVLGGMLELG 371

Query: 383 ELSQSFHIDLAEVLSLYNIS 402
           + +   H  L + ++  +I+
Sbjct: 372 DWTVREHELLGKKIAAASIT 391


>gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
 gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri]
 gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
          Length = 459

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 136/450 (30%), Positives = 219/450 (48%), Gaps = 25/450 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +     F  ++G   DGH ++  A   GA   +  +D    I   + P+ 
Sbjct: 26  VTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTNGAVASLWASDH--EITDQTHPLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            V D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KTYA   ++
Sbjct: 83  VVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVAKTYA---NF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV P IAVIT I  AH+  F   
Sbjct: 140 NNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTR 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI  GL++ GT+  N D+    LL+ +   L  + +  FG+  + +      
Sbjct: 200 DKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLAQRQM-RFGRQLSNNLYATSV 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                Q    V  +    E     +G +   N L  + +  IL        +AL+     
Sbjct: 256 HDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELT 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R +  +    +    ++ + YN+NP + K  +  +++ +P   GRRIAVLGDM E+G+
Sbjct: 315 ENRAEWVKGKNGE---QILSDVYNSNPTAAKEVLKTIAE-TPVA-GRRIAVLGDMLELGD 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSET-MDGLFLFI 437
            +   H  LAE +    I+ V+L G  +  LKD L     P     HY+ + +  L   +
Sbjct: 370 AAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGYPAEDIYHYAASDLQQLIADL 429

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++L   D+V++K+S+      ++  L  E
Sbjct: 430 TTTLTGDDIVLLKASHGIHLEEVLTALKAE 459


>gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 479

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 206/449 (45%), Gaps = 32/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A + GA       D+ A    +     
Sbjct: 48  INQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFENGALATFTEKDLPADQAHIL---- 102

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  KLA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 103 -VDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 161

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +P  AV+T I  AHL  F   ++I
Sbjct: 162 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+     + +  D      L +         +  FG    A+  + +  + 
Sbjct: 222 AQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEF 273

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +        L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 274 KDHLTFSTNFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 330

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 331 R-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQS 387

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHY------SETMDGLFL 435
              H  +   L+   I  V   G  +  L   L   I    HV+Y       +  D +  
Sbjct: 388 VQLHTQMILSLTPDAIDTVIFYGEDIAELS-QLASQIFPLGHVYYFKKTADEDQFDAMVK 446

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            I+ SL + D +++K SNS    +++  L
Sbjct: 447 HIKESLGEHDQILLKGSNSMNLAKVVEEL 475


>gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 504

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 207/448 (46%), Gaps = 43/448 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89
           DSR I P + F  +KG   DGHDFI  A + GA         VA+     +   P   V+
Sbjct: 80  DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA---------VATFSEKVVEGHPYILVE 129

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A   LA A   ++K  + A+TGS GKTTTK+ML   LS+   TY   G+YNN IG+
Sbjct: 130 DVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGL 189

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP   D  + E+G  HLG+I  L+ L  P  A++T I  AHL  F    EIA  
Sbjct: 190 PYTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKG 249

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQC 266
           K +I +G+ + G + +  D      L  K      +T+  FG  +     +   RK    
Sbjct: 250 KLQIADGMPEGGLLVVPADPIVDAYLPEK------QTVVRFGPDEEIFITELIERKDSLT 303

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEG 325
              +++E   +   + V     G + A N  M    V++     + AI+ +         
Sbjct: 304 FRANFLE---EAIDLPVT----GKYNATNA-MIAAYVALQEGVSEAAIRDSFETLQLTRN 355

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R + ++ A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+GE S
Sbjct: 356 RTE-WKKASNGA--DILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQS 412

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   LS   +  V   G  +  L     +     HV+Y       +  + +   
Sbjct: 413 VDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQ 472

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++ SL + D +++K SNS    +L+  L
Sbjct: 473 VKESLKEQDQILIKGSNSMNLAKLVEEL 500


>gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915]
          Length = 447

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 208/442 (47%), Gaps = 53/442 (11%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IPVFGVD 89
           +D R   P   F A  G H DGHDF   A Q GA         VA +GS    +P   VD
Sbjct: 31  LDGREARPGGLFVAFDGEHVDGHDFAGQAGQAGA---------VAVLGSRPTVLPTVVVD 81

Query: 90  DVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           DV  AL  LA     RLR+  T+IA+TGS GKT+TK+ L   L+S+  T A + + NN +
Sbjct: 82  DVQAALQALAAHVLARLRAGLTVIAVTGSQGKTSTKDQLGAVLASVAPTIATVANRNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R   +  F + E+G  H G+I  LT+L    +AV+  +  AHL  F   E I 
Sbjct: 142 GVPLTVLRAGPETRFLVLEMGARHTGDIAMLTNLYPLDVAVVLNVGTAHLGEFGSREAIG 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------ 261
            AK E+  GL   GT  LN DD    L+++ S       + +FG + +AD ++R      
Sbjct: 202 RAKGELVRGLVPGGTAVLNADDPRVALMRSLSDG----PVLTFGYADHADVRVRDLTLDR 257

Query: 262 ----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                +  C+  + + V L           +G H A N              +D A   L
Sbjct: 258 FGRPSFTLCTADASVGVTLP---------FVGGHQAGNASAATAAALAAGVSLDVAAAVL 308

Query: 318 SVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAV 374
                      ++R  L       TL+++SYNA+P S +AA+  L  +    EG RRIAV
Sbjct: 309 GTASL-----SKWRMELRHLTSGVTLLNDSYNASPDSTRAALDALLAV----EGARRIAV 359

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGL 433
           LG+M E+G+ S++ H  + E  +      V   G  V  L D A  R++ +  +   D  
Sbjct: 360 LGEMRELGQASEAEHRAVGE-YAAARADMVIAIGETVRPLADGAGDRAVVLADN---DAA 415

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
             ++  +L  GDVV+VK+S   
Sbjct: 416 VKWLHGNLAAGDVVLVKASRGA 437


>gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
 gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
          Length = 464

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 200/401 (49%), Gaps = 32/401 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q ++G  +G   +     IS D+R    +  FFA+KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
               L   +K  AC        G+ NN +GVPLTL R+  +  F + ELG +H+GEI + 
Sbjct: 119 TAKIL---QKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIAYT 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K  
Sbjct: 176 TEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK-- 233

Query: 239 SHALGIKTIYSF---GKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +G   + SF   G+ K++  DF  +  +     S   +      +E+    +G H  
Sbjct: 234 --EIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGEIEINLPYLGEHNV 291

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   + AD+ TA+KA  +      +G+ Y   + +     ID+SYNAN  SM
Sbjct: 292 SNALAATALAMAVGADL-TAVKA-GLEQRSAVKGRLYPIEIKENVL-FIDDSYNANVDSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           K+A+SVL Q        RI V GDM E+G+ S + H ++A+
Sbjct: 349 KSAVSVLKQYPAF----RIFVAGDMAELGKDSPACHQEVAD 385


>gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 464

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 212/464 (45%), Gaps = 61/464 (13%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R I P   +FA+KG  +DG+ F   A+ KGA L V++            P + +
Sbjct: 28  GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDN-----------PAYQI 76

Query: 89  D-------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           D       DVL AL +LA   R   K  II ITGS GKTTTKE++   LS   +  A  G
Sbjct: 77  DERTLLVPDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IGVPLTL  +  + D  I E+G +H  EI  L+ +  P    IT+I  AHL  F 
Sbjct: 137 NLNNAIGVPLTLLSIKPETDIAIVEMGANHPHEIADLSRIAEPDYGYITSIGKAHLEGFG 196

Query: 202 GIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--- 257
             E +   KAE+++ L+    TI  N DD+       +S   G   +YSFG +   +   
Sbjct: 197 SFEGVIKTKAELYDYLKAHQKTIIYNADDTL-----QQSLVEGYANVYSFGTTDEVNVPV 251

Query: 258 -----------FQLRKWKQCSEQS-----WMEVQLQGKSMEV--VHHGIGYHMAQNMLMT 299
                      F      Q  E +     +++  ++G S     V H +G +   N+   
Sbjct: 252 ACVAVQPVSIRFSEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGSYNFNNIAAA 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-S 358
           +              + +  + P   R +      N    TL+ ++YNANP+SM AAI +
Sbjct: 312 VAFGRYFRLPAAAIKRGIEKYVPHNNRSQLMAWGTN----TLLLDAYNANPSSMAAAIHN 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+   P+   +++ +LGDM E+G+ + + H  + + L+ +    V+L G H    K   
Sbjct: 368 VLTM--PNFT-KKVLILGDMFELGDYAAAEHQQIVDSLTPHQWEGVYLVGQHFAQTKSPY 424

Query: 419 PRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           P+       ET +     F Q +  D  ++++K S      RLI
Sbjct: 425 PQ------YETFEAFQEAFKQLTFTDS-LILIKGSRGMALERLI 461


>gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 427

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 185/381 (48%), Gaps = 22/381 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  DSR I     FF+++G +++G+ F   A++ GA   V++ +         I V   
Sbjct: 15  GVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKENYIQV--- 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  L +LA   R + K  II ITGS GKTTTKE++   L +  KTY   G+ NNHIG
Sbjct: 72  DNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL+L  +  + +F + E+G +H+GEI  L+ +  P+   IT    AHL  F   E +  
Sbjct: 132 VPLSLLEISENTEFAVIEMGANHIGEIELLSKIAEPNYGYITNFGKAHLEGFGSEEGVIK 191

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E++E L E +G IF N DD      K K         + FGK       L K    +
Sbjct: 192 GKSELYEFLTESSGFIFYNSDDE-----KQKHILSNYNKKFGFGKEAGDLNYLVK----A 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E   + V++  K+ +    G  Y++  N++  + I   L   V+     +S +     R 
Sbjct: 243 ENPNIVVEVNNKTFKSTLFG-NYNIP-NVISAISIGIFLGVPVEKVKNGISDYISSNNRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N     +I ++YNANP+SM  AI             ++ +LGDM E+G     
Sbjct: 301 QILKINSN----NVILDAYNANPSSMLLAIKAFQNAELE---NKVLILGDMFELGRDENK 353

Query: 388 FHIDLAEVLSLYNISHVWLSG 408
           FH ++ +  +  +I  V+L G
Sbjct: 354 FHQEIVDYCNNLDIERVFLVG 374


>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes str. Scott A]
          Length = 470

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 211/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 384 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 MNGNEWILVKGSYGMGLKDVVENLI 468


>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 455

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 206/443 (46%), Gaps = 17/443 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F  ++G   DGHDF+  A+  GA   +             I V 
Sbjct: 24  ITSVAFDSRKITDGGLFVPLEG-ERDGHDFVAGAINNGASATLWKKGHPNKPDD--IAVL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A+  LA     +   T++ ITGS GKTTTK+M+   LS     +    ++NN 
Sbjct: 81  EVDDPLEAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQENFNNG 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P + VIT I  AH+  F   ++I
Sbjct: 141 IGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVCVITMIGEAHIEFFGTRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L + G    N D+    LL  ++  +  +   +FG   N       ++  
Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLAERAKKIN-QAKATFGFEDNDTVYATGFRSY 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   +    +   +    IG H   N +  + +        +    +L+ F P   R
Sbjct: 257 KHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGHHFGESDEEIAASLANFTPTANR 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +  + +   + +   YN+NP +++A ++   QI     GRRIAVLGDM E+G+ S 
Sbjct: 315 MEWEKGDVGEDIMSDV---YNSNPTAVRAVLNSFGQIEMPNGGRRIAVLGDMLELGKKSP 371

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSL 441
             H  LA  L    I+ V+L G  +  L +AL       S+H + ++ MD +   +++ +
Sbjct: 372 ELHAGLANSLDPQVINEVYLIGDEMKHLYEALQTKYSEESLHYYQADHMDHMIDDLKNDI 431

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
              D+VV+K S+     +++  L
Sbjct: 432 KPNDIVVLKGSHGMHLEKVVARL 454


>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
 gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
          Length = 437

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 186/377 (49%), Gaps = 31/377 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  D+R + P E F A+ G  +DGH F+  A+ +GA   +V+     +    ++PV  V
Sbjct: 32  GIQTDTRVLQPGEIFLALGGEKFDGHQFVEMAIARGAVAAIVDY----TYDYPNLPVIKV 87

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            + L A  +LA   R +    +I +TGSVGKTTTKE++   L +  K +   G++NN IG
Sbjct: 88  SNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIASVLGTRGKVHKTYGNFNNEIG 147

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL  +    DF + E+ M   G+I  LTH+ +P+I VIT +  AH+      + IA 
Sbjct: 148 VPKTLLELSEGDDFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSEQAIAE 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLRKWK 264
           AK E+   +       LNYD+    +  AK    G    Y F     + K  D+Q     
Sbjct: 208 AKCELLAEMPNDSVAVLNYDNPLL-MTTAKQVWSGEVISYGFSGGDIQGKLVDYQ----- 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                   ++++ G ++ +   G+  H   N L  L +  +L  D       ++V  P +
Sbjct: 262 --------KIEVGGMTLPLPLTGV--HNGSNFLAALAVAKVLDVDWKLLEAGINVTMP-Q 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR + ++   +     ++DE+YNA P +M AA+ +L+Q       R+IAVLG M E+GE 
Sbjct: 311 GRSQSWKLPKD---IMILDETYNAAPEAMLAALELLAQTPGR---RKIAVLGAMKELGER 364

Query: 385 SQSFHIDLAEVLSLYNI 401
           S   H  + E +   N+
Sbjct: 365 SAKLHQQVGETVRKLNL 381


>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9902]
 gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9902]
          Length = 449

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 219/466 (46%), Gaps = 39/466 (8%)

Query: 11  LQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L A  G  +G  P     +  I  DSRS+   + F  + G ++DGH F+      GA   
Sbjct: 8   LIACWGAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAA 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV       + S  +  + VDD L A  +LA+  R      ++A+TGS GKTTT+E++  
Sbjct: 68  VVEQSWSDPLPS-DLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRA 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           AL+ +   +   G+ NN IGVPLT+          + E+GM   GEI  L+    P +AV
Sbjct: 127 ALAPLGDVHCSEGNNNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAV 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  AH+      E IA+AK EI   L+  G + +   D+  E   +K        ++
Sbjct: 187 ITNIGTAHIGRLGSREAIAAAKCEITAALKSDGVVVIPAGDALLETALSK--------VW 238

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIV 303
           S G+      ++R        +     +    +EV  H +     G H A+N+L+ L + 
Sbjct: 239 S-GRV----VRVRLADDTPVAADCIGAIDAGQLEVGAHRLPLPLEGRHNARNVLLALAVA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D   ++ A+ V  P  GR +R    L QG  TL+DE+YNA+P ++ AA+++LS  
Sbjct: 294 DQLGVD-SASLNAMEVSVPG-GRNRR----LVQGGLTLLDETYNASPEAVMAALTLLSS- 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA---L 418
                GRR AVLG M E+G  S   H D+A   +   +  + +   G    A+ +A   L
Sbjct: 347 ---QPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGL 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           PR   V   E        ++  L  GDVV++K+S      RL+ LL
Sbjct: 404 PRLAVVSSPEDA---AKPLKEWLRPGDVVLLKASRGVALERLLPLL 446


>gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
 gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 200/399 (50%), Gaps = 10/399 (2%)

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            +  G++  + D+ A +  L  PV  V D   A+  +   AR +    ++A+TGS GKTT 
Sbjct: 632  RPVGVITSDPDVQAQLKDL--PVLHVADTGKAILAMGSYARKQMSGAVLAVTGSAGKTTL 689

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              ML  AL++  +T A   + N   G+   LA +  D    + E+ + ++G+   +    
Sbjct: 690  VAMLADALNAYGQTAASAFNANLPHGLSWNLASINWDTPHVVLEVAVGNMGKSALI---A 746

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RP+I++ T I PAHL   S I +IA  K+ IF G+     + LN D   +E +   +   
Sbjct: 747  RPNISIFTNIQPAHLGKSSTITDIARTKSMIFRGMSAGSIVILNRDMLEWETVYQAAMEQ 806

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  I ++G +  +DFQL       + +   V+++G+ +       G HMA N +  L  
Sbjct: 807  DLN-IVTYGTTAQSDFQLVDHDALRQSA--TVRIRGRDITYPIGAAGLHMALNSVAVLAA 863

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            V  L   ++ A++ ++ F    GRG+     L+    T+ID +YNANP SM+AA+  L  
Sbjct: 864  VLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNANPGSMQAALEHLRD 923

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +  H   RR+AVLG+M E+G  +   H DLA V+    I  V++ G       + LP + 
Sbjct: 924  MK-HAR-RRVAVLGEMAELGPEAPMLHADLAAVVERCGIDRVYVMGELYTGFWEQLPAAR 981

Query: 423  HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               ++ ++D L   +   L D DVV++K SNS G + ++
Sbjct: 982  RGRHTNSLDELKSALSEELADEDVVLLKGSNSTGIHHIV 1020


>gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes 220]
          Length = 457

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 211/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 26  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455


>gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 440

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 202/440 (45%), Gaps = 27/440 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I  DSR I   + F  +KG   DGHDFI  A   GA ++  +   V     L     
Sbjct: 26  VNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A   LA     ++K  +IA+TGS GKTTTK+M+   LS   KTY   G++NN 
Sbjct: 79  -VDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNNE 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM H G+I FL+ L +P +A+IT I  AHL      E I
Sbjct: 138 IGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K  I  GL   G +    D      +         + I  FG     D  + K  + 
Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPEN------QKISRFGLP-GEDLFITKLIEH 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILT-ADVDTAIKALSVFHPKE 324
            E+   E     +S+ +   G  Y+    ML   +G+   LT A++  A+K + +   + 
Sbjct: 249 KERLTFETNFLDESITIPVPG-KYNATNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRT 307

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              K    A       L+ + YNANP +M+  +     I  +  GR+IAVL DM E+G  
Sbjct: 308 EWNKSKNGA------DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPT 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   H ++ + +    I  V+L G  +  L D +     V Y   +D L   + + L   
Sbjct: 362 AAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKPVSYFTDLDLLTESLSADLKPA 420

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D V+ K SNS     ++  L
Sbjct: 421 DQVLFKGSNSMKLSEVVEKL 440


>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
 gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
          Length = 460

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 180/384 (46%), Gaps = 14/384 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+S DSR+I     +  + G  +DG  FI     KGA   + +TD      ++SIP 
Sbjct: 26  LIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKGASAFLADTDCKIK-NNISIPY 84

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             V+D L +L  LA A R   K T +I ITGS GKTTTK++L   L    K    IG+ N
Sbjct: 85  IRVEDTLKSLQDLARAYRSELKNTKVIGITGSNGKTTTKDLLYEVLKEKYKVQKTIGNLN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP T+  +  D +  I E+G    G+I   T++ RP IA+IT I  +HL      E
Sbjct: 145 NEIGVPKTILSLDEDTNIAIVEMGTDSFGDISLTTNISRPDIAIITNIGDSHLEKLKTKE 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            I  AK EI EGL + G    N DD   +  +  S+ +  K I SFG+  + DF ++   
Sbjct: 205 GILKAKMEIVEGLSQDGYFIYNGDDPTMK-KEISSYEVKQKMI-SFGEEDDNDFVVK--- 259

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             S+ +  +V             +G H   N  +T+ + S+L    D   K LS   P  
Sbjct: 260 -SSDDNRGKVSFTHDGETYTIPLLGSHNIYNGGVTVLVSSLLGLSTDQIKKGLSEVTPAN 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R       +    F ++D+ Y +NP S+++ +     +   G   +I VLGDM E+G+ 
Sbjct: 319 NRS----SIIEFEGFDVLDDCYKSNPQSLRSGLKTTKLLG--GYDSKILVLGDMLELGDS 372

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408
               H  +   +   +I +    G
Sbjct: 373 EDDLHYQVGSEIDPKDIDYCLFFG 396


>gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 466

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 204/448 (45%), Gaps = 67/448 (14%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL                QG S   +    G H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSFVRLPFA-GEHNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  +K L+     +GR    + A +      ID++YNANP SM+AA  VL Q +  
Sbjct: 308 GVSLEDIVKGLAQAQGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQQN-- 361

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLALK 415
             G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   LK
Sbjct: 362 --GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLK 419

Query: 416 ------DALP---RSIHVHYSETMDGLF 434
                 +ALP     I  H  ++M  LF
Sbjct: 420 AFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 457

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 212/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+S+P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEISYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QGS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
 gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
          Length = 467

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 211/452 (46%), Gaps = 46/452 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR       FFA++G   DGH F   AV+ GA L+V    +      + +    V+
Sbjct: 32  VQTDSRLSTAGSIFFALRGETTDGHLFAHTAVENGATLIVAERAL-----DIDVAQIIVN 86

Query: 90  DVLGALNKLA--VAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           D + AL  LA  V AR+R      ++A+TGS GKTTTK ML   L    +T A  GS+NN
Sbjct: 87  DGVTALQALARAVVARVRENGQLKVLAVTGSNGKTTTKNMLRTILEREGETVAPKGSFNN 146

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G P+T+  +     + + E+G   +G+I  L  +V P + ++  +  AH+  F     
Sbjct: 147 DVGAPITMLGVTNSSKYLVVEMGADGIGDITRLQSIVMPDVGIVLMVGLAHIGKFGDAAT 206

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            A AK+E+   L    T  LNYDD     +  ++ A    T+  FG   ++D    + + 
Sbjct: 207 TALAKSEMVTALPPQSTAVLNYDDGRVRAMAPQTEA----TVNFFGLDSHSDVWADEIEA 262

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +  +  ++ +  + + V    +G H   N L  +     L   V  +  AL        
Sbjct: 263 SARGTAFDLHVADEVVPVQLRILGEHHVTNALAAITAARALGIPVQRSAVALESID---- 318

Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMG 382
           R +R+R  L +  G  T+I+++YNA+P SM AA+  L Q + P  E R +AVLG++ E+G
Sbjct: 319 RAERWRMELLEAPGGITVINDAYNASPDSMAAALKTLVQVVGP--ENRSVAVLGEIAELG 376

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---------- 432
           E +   H  +  ++   N+  + + G            + H+H +  ++G          
Sbjct: 377 EYANEEHDRIGRLIVRLNVQKLIVVGHA----------ARHIHNAAGLEGSWDGESVLVD 426

Query: 433 ----LFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                +  ++  L  GDVV+VKSSNS G   L
Sbjct: 427 NVEEAYAVLREELRGGDVVLVKSSNSAGLRHL 458


>gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 455

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 208/444 (46%), Gaps = 19/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I+    F  IKG   DGHDF+  A++ GA   +             I V 
Sbjct: 24  ITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGHPNK--PEGIAVL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A+  LA     +   T++ ITGS GKTTTK+M+   L+     Y    ++NN 
Sbjct: 81  EVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M    +  + E+GM   G++  L+ L RP +AVIT I  AH+  F   ++I
Sbjct: 141 IGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L++ G    N D    E L A+  A   +   +FG + +        +  
Sbjct: 201 ADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLSQDKSTFGFADSDSIHASDLRST 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
              S+ ++   G   E     IG H   N +  + +V     + D  I A L+ F P   
Sbjct: 257 MHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDGEIAAGLANFVPTAN 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +    +   + I   YN+NP ++KA  +   Q+     GRRIAVL DM E+G  S
Sbjct: 314 RMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440
              H  LA  L    I+ ++L G  +  L  AL      +++H +  + M  L   ++S 
Sbjct: 371 ADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQNLHYYPEDEMSHLIDDLKSD 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           +   D+V++K S+     R+++ L
Sbjct: 431 IHSQDIVLLKGSHGMHLERVLDRL 454


>gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 209/441 (47%), Gaps = 25/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGV 88
           +  DSR I     F  + G   DGH+F   A   GA   +  +  +    G L IPV   
Sbjct: 25  VEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHPTIQPPQGILVIPV--- 80

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D + A  +LA A + +    IIAITGS GKTTTK+M+   ++   +TY   G++NN +G
Sbjct: 81  KDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTYKTQGNHNNELG 140

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+   P D    I E+GM H GEI  L+ L  P  A IT I  AH+ N    E IA 
Sbjct: 141 VPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITLIGEAHIENLGSREGIAK 200

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI  GL+K G   +  D+   +           +TI +FG ++  D Q    ++  +
Sbjct: 201 AKMEITAGLKKDGFFMIPVDEPLLDPFVPNL----TQTIETFGLTE-GDLQGDIVEESQD 255

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q+   V     ++ V    +G +  +N L+ +G+        +   + L+ F   + R  
Sbjct: 256 QTIFTVAGTTFTLPV----LGGYNVKNALIAIGLGRHFGVSNEAIKEGLAHFQLTKNR-T 310

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           ++  A N     ++ + YNANP +M   +    ++    EGRRIAVL DM E+G  S   
Sbjct: 311 QWVTAGNGA--AILSDIYNANPTAMGLVLDSFRKLPL--EGRRIAVLADMLELGPDSAQM 366

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHY--SETMDGLFLFIQSSLVD 443
           H  +A  L   +   V+L G  + AL+  L   P +  V Y  ++    L   ++ +L  
Sbjct: 367 HEQMAAHLD-DSFQLVFLYGKEMQALQKRLAQSPLADKVRYFATDEKPQLIASLKETLEP 425

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            D +V+K SN  G   +++ L
Sbjct: 426 SDSLVIKGSNGMGLSEVVDAL 446


>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
 gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
          Length = 470

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 211/454 (46%), Gaps = 39/454 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTG--------TIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           A AK EI  GL  +G        T+ L N D  F +L   KS A  I  +    +++   
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLLLGNIDGDFRQLTFGKSEAAEIYPLEIRAEAEGTS 276

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAI 314
           F +  W+                +E+    IG H   N +  +     + I    + +A+
Sbjct: 277 F-VTNWE--------------PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSAL 321

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K +      E    R           +++++YN++P ++K  +     +  +G+ ++  V
Sbjct: 322 KNM------ERSKSRLEWITTNSGARILNDAYNSSPTALKTVLKTFMHMDSNGK-QKYLV 374

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMD 431
           L DM E+G+LS   H + AEVL    I+ ++L G  + A        I    + + +T +
Sbjct: 375 LADMLELGDLSTKLHQESAEVLENDTIAKIFLYGDAMKAFGAVAEAKIGQGKLQHFDTKE 434

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            L + + S +   + ++VK S   G   ++  L+
Sbjct: 435 SLEMALLSEITGNEWILVKGSYGMGLKDVVENLI 468


>gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
 gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
          Length = 457

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +G+  VVV  +      S+ +P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVAQGSVAVVVQQEN----SSILVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNIKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 469

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 218/475 (45%), Gaps = 52/475 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A+ G  +G  P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
           A+  GA + V+ T  V+ +     P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AISAGA-VAVLGTREVSGV-----PMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   +  + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   + + ++
Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPSDGLAVLNADDPRVDAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
           + A     +  +G+S+ AD +            S+  V  +G +   V  G+ G H   N
Sbjct: 234 TRA----RVVRYGESERADVRAVDVTLDGRGRPSYTLVTPEGSAP--VRLGLTGRHQVSN 287

Query: 296 MLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L    +   + +   D+  A+  L +        +R          T+ID+SYNANPAS
Sbjct: 288 SLAAAAVGRELGLPLPDLAAALNELGLVST-----RRMDVFERPDGVTVIDDSYNANPAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A+  L+ +   GEGR +AVLG M E+G+     H  +  + +   +  + + G    
Sbjct: 343 TGVALRALASM--RGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVG---- 396

Query: 413 ALKDALPRSIHVHYSETMDG------LFLFIQSSLVD--------GDVVVVKSSN 453
             + A P    +H   T  G      + L  Q++ V+        GDVV+VK S 
Sbjct: 397 --EPAAP----IHEGATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR 445


>gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
 gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
          Length = 1110

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 202/410 (49%), Gaps = 31/410 (7%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +    +KG  LV+ +       G        V +   AL KLA+A R   +  +I +TGS
Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQY----LEVRNTFTALIKLALARRAAFRGRVIGVTGS 426

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTT   M+T  L    + Y  I ++N+  GVP ++A +P    + + E+GM     I 
Sbjct: 427 VGKTTVCSMVTSLLGVHGEVYKNIANFNHQPGVPKSIANIPRTARYAVIEMGMGAKRTIL 486

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               LVRPH AV+T I   H+     +  + + K EI  G+E  GT+ LN D ++F  L 
Sbjct: 487 PKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWGVESGGTVVLNRDSAYFATL- 545

Query: 237 AKSHALGIK----TIYSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVH 285
              H L ++     I +FG+   AD        C+E       QS ++V++  ++ +   
Sbjct: 546 ---HGLALQRSDINILTFGQHPQADI-------CAEEIVLEPVQSVIQVRVFQQTFKYTL 595

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDE 344
              G HMA N L+ + ++     D+ T++        +  R ++ R     G    ++D+
Sbjct: 596 SLPGMHMALNSLIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGARIQILDD 655

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+NANPAS+++ + +L  + P  EGRRI VL DM EMG  +  +H  LA+ ++   I  +
Sbjct: 656 SFNANPASIRSNLHLLELMRPESEGRRILVLSDMGEMGSEALHYHTALAQDINDSQID-I 714

Query: 405 WLS-GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +LS G +  AL   +   I H H++ +++ L  F+Q  +  GD+V  K S
Sbjct: 715 FLSIGDYCHALDQLIENRITHKHFN-SVEALETFLQEVVRSGDIVSFKGS 763


>gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
          Length = 480

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 207/469 (44%), Gaps = 42/469 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +     FFA+KG  +D HD+++ AV++G   VVV          +++P  
Sbjct: 25  VETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVEQGNTAVVVE-----HACEVNVPQI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML------TIALSSIKKTYA-- 138
            V D   AL  LA   +       +AITGS GKTT KEM       T   S++K T    
Sbjct: 80  VVADTRLALGHLAQWLKSELNPLTVAITGSSGKTTVKEMTASILQQTARKSAVKNTEVFF 139

Query: 139 ----------------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                             G++NN IGVPLTL R+  +  F + ELG +H GEI + T LV
Sbjct: 140 TGSNHGKANFADAVLFTQGNFNNDIGVPLTLLRLQPEHRFAVIELGANHAGEIDYTTKLV 199

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  +A AHL  F  ++ +A AK EI+ GL + G   +N D  +  L   +   +
Sbjct: 200 RPDVALINNVAAAHLEGFGSLDGVARAKGEIYRGLSEDGIAVVNSDCHYLSLWDKE---I 256

Query: 243 GIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + SF  +   AD+     +     S   +     S+++    +G H   N L    
Sbjct: 257 AGHRMQSFSATNPEADYWAENIRMTESGSAFTLHSPDGSIDISLPYLGAHNIDNALAATA 316

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   + A++      L    P +GR        N     L+D++YNAN  S+K+AI VL 
Sbjct: 317 LAMNVGAELCDVKAGLEQRSPVKGRLFPIEPCNN---LLLLDDTYNANVDSLKSAIGVLK 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 E  RI  +GDM E+GE S+  H  +A      N+  V   G     +  A   +
Sbjct: 374 NY----EAFRILAVGDMAELGENSRECHRQVANYAKSANLDCVACFGAETAVIAQACNGT 429

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468
                +   + L   I   L +   VV+  K S S     +I +L  +F
Sbjct: 430 HFTDKTVMANYLAAVIDEKLKNNQRVVLLAKGSRSQKMEDVIAILKRKF 478


>gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 459

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 215/448 (47%), Gaps = 21/448 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR    +  FFA+KG H+D H ++  AV++G    VV     + I  L     
Sbjct: 25  VENVSTDSRQSISKGLFFALKGEHFDAHHYLDKAVEQGCIAAVVERQTNSPIAQLV---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L      +  +    G+
Sbjct: 81  -VKDTRLALGQLAKWLREKINPKTVAMTGSSGKTTIKEMTAAILQQSAVDFDDVLFTHGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H+GEI + T L +P +A++  +A AHL  F  
Sbjct: 140 FNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIAYTTALAQPDVALVNNVAAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++ +A+AK EI+ GL   GT  +N   ++ +  +A+     ++  +++   K AD+    
Sbjct: 200 LDGVATAKGEIYRGLTSNGTAIINLAHNYQQKWQAEIADHSVQ-YFAYDNPK-ADYYAEN 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + +   +     S+++    +G H   N L    +   + A +      L++   
Sbjct: 258 IVFSEQGASFLLHTPKGSIQIHSSYLGEHNVSNALAATALAMNVGASLQDVQNGLAMKSQ 317

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR        N     L+D++YNAN  SMK+AISVL +        R+ V+GDM E+G
Sbjct: 318 VKGRLFPIEPCEN---LLLLDDTYNANVDSMKSAISVLQKYPAF----RVFVVGDMAELG 370

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSL 441
           + +Q  H ++A+      +  V LS  +   +  A+    H    +E    L   I+  L
Sbjct: 371 DNTQLCHQEVADFAHAAKLDLV-LSCGNASEVISAVNSGKHFTDKTELASYLISVIKQQL 429

Query: 442 VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
            +  VVV VK S S     +I+LL + F
Sbjct: 430 TEQKVVVLVKGSRSMKMENVIDLLKDSF 457


>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 458

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 205/438 (46%), Gaps = 27/438 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R++ P   F A+ G   DGH+F+  AV KGA  VVV         S+++    V 
Sbjct: 27  VSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAAGVVVERPF-----SINVTQIVVK 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA+  R +    +I ITGS GKTTTK+++   L       A   ++NN +GV
Sbjct: 82  DTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLVKAVLRQKYNVCATEKNFNNELGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL     + + GI E+GM  LGEI  L  + RP I +IT I  AHL      E IA A
Sbjct: 142 PLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQENIARA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+ + L   G   +N +  + + + A    + +K  Y FG  +  D  ++K+ Q  E 
Sbjct: 202 KSELIKNLPGDGVAIINGESPYIKEIVAN---IPVKK-YFFG-HRAGDLYIKKFSQ--ED 254

Query: 270 SWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +     G    E      G H A N L  +     L   V    K LS     E  G 
Sbjct: 255 DGLRFITAGILEEEFFLPLFGVHNAVNALAAILTALTLGVRVPLIKKGLSEV---ELTGM 311

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R       G   +I + YNA+P SM+AA+ VL+      +GR+IAVLG+M E+G+   + 
Sbjct: 312 RLEIQF-IGSMKIIKDYYNASPTSMEAALKVLAGTGQ--KGRKIAVLGEMYELGDFETTG 368

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLV 442
           H  + EV S   +  +   G     + +        P++I    ++   G FL   + L 
Sbjct: 369 HRRVGEVASKLGVDFLITVGPKAREIGNGALAGGMSPQNIFHFATKEEAGSFLL--NFLK 426

Query: 443 DGDVVVVKSSNSCGFYRL 460
             D V++K+S    F  L
Sbjct: 427 PEDTVLLKASRGMKFEEL 444


>gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 447

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 211/436 (48%), Gaps = 41/436 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89
           +D R   P   F A  G H DGHD+   A + GA         VA++GS    +P   V+
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGA---------VATLGSRPTPLPTVVVE 81

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LA  V ARLR   T++ +TGS GKT+TK++L   LSS   T A IGS NN +
Sbjct: 82  DAQSALQALAAHVVARLRDGLTVVGLTGSQGKTSTKDLLAAVLSSAAPTIATIGSLNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R      F   E+G  H+G+I  LT LV P IAV+  +  AHL  F   E IA
Sbjct: 142 GVPLTMLRADPATRFLALEMGARHIGDIAELTGLVAPDIAVVLNVGQAHLGEFGSREAIA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265
             K E+ +GL   GT  L  DD     +++ +       + +FG+ ++AD ++      +
Sbjct: 202 RTKGELVQGLAPGGTAVLGADDPRVVAMRSLTDG----PVLTFGRVEHADVRVLDLALDR 257

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S+  ++    S  V    +G H A N              +D A  AL+     + 
Sbjct: 258 LGRPSFT-LRTADASAPVTLPLVGGHQALNASAAAAAGLAAGVPLDVAAAALATASLSQW 316

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +    A      TL+++SYNANP S +AA+  L+ I     GRRIAVLG+M E+G+ S
Sbjct: 317 RMELRDLACGA---TLLNDSYNANPDSTRAALDALAAIE---GGRRIAVLGEMRELGDGS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL------FLFIQS 439
           ++ H  + E    Y  S   +    V+A+ +A  R I     E +  L        +++ 
Sbjct: 371 EAEHRAVGE----YAASRADV----VVAVGEAA-RPIADGAGERVVALADNNAAVDWLRG 421

Query: 440 SLVDGDVVVVKSSNSC 455
            L  G+VV+VK+S   
Sbjct: 422 HLAAGEVVLVKASRGA 437


>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 470

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 211/446 (47%), Gaps = 23/446 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VD+ L +L +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265
           A AK EI  GL  +G +   ++++        S+  G     +FGKS+ A+ + L    +
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LSNINGDFRQLTFGKSEAAEIYPLEIHAE 271

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHP 322
               S+  V      +E+    IG H   N +  +     + I    + +A+K +     
Sbjct: 272 AEGTSF--VTNWEPELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKM----- 324

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G
Sbjct: 325 -ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKYL-VLADMLELG 382

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQS 439
           ELS   H + AEVL    I  V+L G  + A        I    V + +T + L   + S
Sbjct: 383 ELSTKLHRESAEVLEKDTIEKVFLYGEAMKAFGTVAETKIGQGKVQHFDTKESLETALLS 442

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   + ++VK S   G   ++  L+
Sbjct: 443 EVNGNEWILVKGSYGMGLKDVVENLI 468


>gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 432

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 212/442 (47%), Gaps = 32/442 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+++G    +V+    A+ G     +  V+
Sbjct: 16  VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGGDERYIL--VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R + K  +I +TG+ GKTTTKE+    LS         G+ NNHIGV
Sbjct: 74  DVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  D    + E G +HLGEI+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLELSPDHTIAVIETGANHLGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQLRK 262
           K E+++ L  K GT+F+++D    + +    H +   +      S      + A F   +
Sbjct: 194 KGELYDYLRAKHGTVFIDHDSEDLKRIAGGVHQICYGSPCDEVLSVEGEVLECAPFLKFR 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           W+    + W EVQ            IG +  QNML    I      +VD+  +AL+ + P
Sbjct: 254 WRPAGGE-WQEVQTG---------LIGAYNMQNMLAAATIGRTFGVEVDSINRALAAYEP 303

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           K  R +      N+    L+ ++YNANP SM+AAI     +      RR+ +LGDM E+G
Sbjct: 304 KNNRSQLMETDDNK----LLVDAYNANPTSMRAAIENFRDMKVE---RRMVILGDMGELG 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E S   H  +A++L      HVWL G    A +    R+      ++++ +   ++    
Sbjct: 357 ESSWKAHQAIADLLVESGFEHVWLVGPKFKAARHPF-RTF-----DSVEQVKKALEIKKP 410

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K S+S   Y L + L
Sbjct: 411 KGYYILIKGSHSTRLYDLPDFL 432


>gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
 gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
          Length = 427

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 195/407 (47%), Gaps = 28/407 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  D+R I     FF +KG ++DG+ F   A+Q+GA   VV+       G   +    V
Sbjct: 13  GIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKTIL----V 68

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L AL  LA   R + +  II ITGS GKTT+KE++++ LS+    +   G+ NNHIG
Sbjct: 69  DDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNLNNHIG 128

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL ++    +  + E+G +  G+I+ L  +  P   +IT I  AHL  F  +E +  
Sbjct: 129 VPLTLLQLNTTHEIAVIEMGANKPGDIKELVEIALPTHGIITNIGRAHLEGFKSLEGVIK 188

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+F  L +  G IF N +D         SH       + +  SK    +L       
Sbjct: 189 TKTELFNFLAQNRGHIFANKEDE-----TITSHLPSNTHNHFYNDSKELHGELISLNPFV 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +W E      S ++  + +G +   N L  + I        +   KA+S + P   R 
Sbjct: 244 NMTWSEPNY--TSSDIHTNLVGEYNFINFLAAIRIGRFFGISAENCNKAISDYQPTNNRS 301

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N    TLI + YNANP SM++A+S  ++I  H    +I +LGDM EMG+ + +
Sbjct: 302 QVTKTEKN----TLIVDCYNANPTSMRSALSSFAKIDNHA---KIFILGDMREMGDEAPA 354

Query: 388 FHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYSETM 430
            H ++     +     + LSGF +    L  K   P +I +  ++ +
Sbjct: 355 VHEEV-----IQQTIDLRLSGFFIGEEFLKFKGTHPNAIFLKSTDPL 396


>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
 gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
          Length = 466

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 216/465 (46%), Gaps = 25/465 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG +       F++ IS D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 18  FTLSQVVEATQGANAHTDNIKFLD-ISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 76

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A G +V     V  I  +      VD+ L A   LA   R R    ++AITGS GKTTTK
Sbjct: 77  ATGAIVEKGRAVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 131

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L +         +YNN IG+P TL R+  + +  + E+GM  LG+I  L  +  
Sbjct: 132 EMVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 191

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +    
Sbjct: 192 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG-- 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            KTI ++G  +NA       +   +      +   +  ++    IG H   + L  +   
Sbjct: 250 -KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +T  K LS F    G   R      +    L D +YNANP+SM  AI  L Q+
Sbjct: 308 RVLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419
                 R+IA+LGDM E+G+ S+  H ++ ++L+    S V+  G    F     K A  
Sbjct: 364 EGK---RKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 420

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +        M   +  I+     GDV++VK S      R++  L
Sbjct: 421 TTFRCKSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 462


>gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 440

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 205/440 (46%), Gaps = 27/440 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I  DSR I   + F  +KG   DGHDFI  A   GA ++  +   V     L     
Sbjct: 26  VNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  KLA     ++K  +IA+TGS GKTTTK+M+   LS   KTY   G++NN 
Sbjct: 79  -VDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNNE 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM H G+I FL+ L +P +AVIT I  AHL +    E I
Sbjct: 138 IGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAVITLIGEAHLEHMGSRENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K  I  GL   G +    D      +         + I  FG     D  + K  + 
Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPDN------QKIIRFGLP-GEDLFITKLVEH 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGI-VSILTADVDTAIKALSVFHPKE 324
            E+   E     +S+ +   G  Y+    ML   +G+   +  A++  A+K + +   + 
Sbjct: 249 KEKLTFETNFLDESITIPVPG-KYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNR- 306

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                ++ A N     L+ + YNANP +M+  +     I  +  GR+IAVL DM E+G  
Sbjct: 307 ---TEWKKAKNGA--DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPS 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   H D+ + +    I  V+L G  +  L + +     V Y   +D L   + + L   
Sbjct: 362 AAQLHKDILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKAVSYFTDLDLLTESLSADLKPT 420

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D V+ K SNS     ++  L
Sbjct: 421 DQVLFKGSNSMKLSEVVEKL 440


>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-003]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 26  ITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALFSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455


>gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 528

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 214/459 (46%), Gaps = 52/459 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-----ASIGSLSIPVFG 87
           DSR  A    F A  G   DGHDF+  AV KGA  V+   D        + GS+     G
Sbjct: 41  DSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVLAAPDDAYRKPWTARGSVPTVTVG 100

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D+L AL+ LA A  ARL  + T+I +TGS GKTTTK+++      +  T A  GS+NN
Sbjct: 101 DGDLLRALSALATAHLARL-PRTTVIGLTGSAGKTTTKDLIGRLTRELGPTVAPKGSFNN 159

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G P+T+ R   D  + + E+G   +G I+ LT +  P I V+  +  AHL  F  +E 
Sbjct: 160 ELGFPITVLRTDEDTRYLVAEMGARGIGHIKHLTTIAPPRIGVVLNVGSAHLGEFGSVEA 219

Query: 206 IASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           IA AK E+   +        ++ G   LN DD+    + A++       +  FG+S +AD
Sbjct: 220 IAEAKGELAAAVPESGNCNPDRDGVAILNADDARVRGMAARTKG----RVVLFGESPDAD 275

Query: 258 FQLRKWKQCSE--QSWMEVQLQGKS---MEVVHHGIGYHMAQNML------MTLGIVSIL 306
            +    +  S+   S+  +   G+      V    +G H   N L      + LG+    
Sbjct: 276 VRAEDVRVGSDGRASFTLLYRDGEGPHRYPVALRLVGEHQVSNALAAAATGLELGLAGEK 335

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQIS 364
            A+V      LS   P      ++R A+ +     T+++++YNANP SM+AA+  L+ ++
Sbjct: 336 VAEV------LSAAEPD----SKWRMAIGESADGVTVLNDAYNANPESMRAALKTLATMA 385

Query: 365 PHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               G R  AVLG M E+G+ S   H  +  +    NI+     G    A+      S+ 
Sbjct: 386 RARPGARSWAVLGTMAELGDDSAVEHDAVGRLAVRLNIAQTVAVGAGAAAIHSGA--SME 443

Query: 424 VHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             Y+         D    F+++    GDVV+VK+S + G
Sbjct: 444 GSYNGESVAVPDADAALAFVRAGARPGDVVLVKASRAIG 482


>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
 gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 209/448 (46%), Gaps = 36/448 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+ IDSR +     F AI G + + H FI   ++KGA  VV + D+    G    P   V
Sbjct: 30  GVVIDSRKVEKDYLFVAIDGENVNAHKFIPDTIEKGALCVVSHEDL----GDTDFPYILV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +    AL  +A   R     T++ ITGSVGKT+TKEM+   +S   K +  +G++NN  G
Sbjct: 86  ESTGQALLDIAKLYRDSFDVTVVGITGSVGKTSTKEMIASVVSQKYKVHKTLGNFNNEWG 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +P+T+  M    +  I E+G++H GE+R L+ +  P I VIT I  AHL  F   E I  
Sbjct: 146 LPITIFEMDESHEVVILEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQ 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+++ + ++  G+I LN DD   +LL       G+  +  FG +++         QC  
Sbjct: 206 EKSQMIQDMKNGGSIILNGDD---DLLSKMGPVKGVTPVL-FGTNEDC--------QCYA 253

Query: 269 QSWMEVQLQ----------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              + + L+          G++ + +    G HM  N L    + + L    D     + 
Sbjct: 254 SGIVPMGLKGTACTIHLPDGEAFDCLIPTPGAHMVSNALAGAAVGAALGLTADEIKAGIE 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                 GR       ++ G   ++D+ YNANP S KAAI VL        GR++AVLG+M
Sbjct: 314 AHTTLPGRNN----IISTGSLMILDDCYNANPVSTKAAIDVLDMAI----GRKVAVLGNM 365

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLF 436
            E+G   +  H ++ E  + + I  V   G     + ++  +  S   H+          
Sbjct: 366 GELGNNEKELHREVGEYAAKHGIDVVCGIGDLAKEITESAAKGASTETHWFAAKQDFLAE 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   + +GD V+VK+S+   F  ++  L
Sbjct: 426 MHHIIKEGDNVLVKASHGMQFPEIVEQL 453


>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
 gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
          Length = 456

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 210/446 (47%), Gaps = 21/446 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+S D+R I     F  + G  +DGH+F   AV+KGA  V    D       L   +
Sbjct: 26  IIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKGA--VATLWDKRHPTPYLDAGI 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD+ L A  KLA +    + A ++ ITGS GKT TK++L   L    + +    + NN
Sbjct: 84  IIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKDILASILKENFRVHNTAKNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP T+  M +D +  + E+GM   GEI+ LT++ RP IAVIT I  +HL      E 
Sbjct: 144 EIGVPKTIMEMDLDDEVVVLEMGMERFGEIKTLTNIARPDIAVITNIGDSHLLELGTKEN 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKW 263
           IA AK EI EGL+  G    N DD   E+L+   K + +  K I   G  +++D  +R  
Sbjct: 204 IARAKFEILEGLKPDGVFIFNNDD---EVLREVIKEYTITQKVI-KIGTREDSDVIIRPI 259

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +   E S   +     S+      IG H   N  + + I  +L  +    ++ LS     
Sbjct: 260 RSDEEGSSFSIGEYAYSIPF----IGKHQIYNASVAITIAGLLGMNYGDIVRGLSRVKLT 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R    ++   F ++++ Y +NP S+ + I  +  +   G   +I +L DM E+GE
Sbjct: 316 ---GMRMEL-IHLSSFDVLNDCYKSNPQSLTSCIETVYTMK--GYKNKILILSDMLELGE 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFLFIQSS 440
             +  H  + E +    I +V   G     + +   R+ +V+   + ET + +   ++  
Sbjct: 370 NERKLHFSVGEKIDRNKIDYVICIGDLAKEIYNGANRNFNVNNLFHFETNEEVVNKVREL 429

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +  +++VK S      ++I +L E
Sbjct: 430 ISEDTLIMVKGSRGMKLEKIIEMLKE 455


>gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 465

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 219/458 (47%), Gaps = 41/458 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR ++    F  + G H++GH F+  A++      VV       +    +P +
Sbjct: 29  VGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEVQAAVVARKDHHPVPE-GLPHW 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A  +L +  R +    ++A+TGS GKTTT+E++  AL+ + +  A  G+ NN 
Sbjct: 88  IVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLASAGNNNND 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVPLTL +   D    + E+GM  +GEI  L+   +P +AVIT I  AH+        I
Sbjct: 148 VGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSRAAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIKTIYSFGKSKNADFQLR 261
           ASAK EI   L+  G I +   D   E     + + +   + ++        + AD   R
Sbjct: 208 ASAKCEITTCLKPRGVIVIPAGDLLLEDALERIWRGRVIRVAVQDNQQLEPPEIADLHRR 267

Query: 262 KWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +     C + +  E+ L+G +  +   G+  H A N+++ L +      ++D   ++
Sbjct: 268 PLPKADLVGCVDLAKGELLLEGNAYTLPLEGM--HNACNLMLALAVAR----ELDVCKES 321

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           LS        G+  R  L  G FT++DE+YNA+P +++AA+ +L+ I P   GR  AVLG
Sbjct: 322 LSNLKVDVPGGRSRR--LKVGNFTVLDETYNASPEAVQAALELLA-IQP---GRHFAVLG 375

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----------ALKDALPRSIHVHY 426
            M E+G+ S + H  +AE         V L G  V+              +LP   H+  
Sbjct: 376 TMLELGDQSVALHRQVAE-----RAVQVGLDGLVVVAAGAEAEAMATAAGSLP---HLAV 427

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +     +Q+ L  GDVV++K+S      +LI LL
Sbjct: 428 VANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465


>gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 223/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++FL   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLFLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QVLDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+ L+  H +  R +  ++ A+N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAVNGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
 gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
          Length = 458

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 193/396 (48%), Gaps = 23/396 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SIDSR I     F   KG   DGH F+  A++ GA   +   D+      L  P+ 
Sbjct: 27  IGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSGAAASLWEKDVPNPPEGL--PII 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L AL  LA A R      ++ ITGS GKTTTK+M+   LS   K     G++N+H
Sbjct: 85  IVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKDMVANLLSLKYKVQKTQGNFNSH 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +    +  + E+GMS  GEI  L+++  P  A+IT I  +HL +    E I
Sbjct: 145 IGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQDLGSREGI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A+AK EI  GL++ G +F+ Y +    LLK +        + +FGK           K  
Sbjct: 205 ATAKMEIISGLKEDG-LFVYYGEE--PLLKERIDKDWKFKVETFGKGTENTLYPLDVKTT 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S  +V  +  + EV+   +G H   N L ++ +      +     +A       + R
Sbjct: 262 DSGSVFKVNAEPDT-EVMLPVLGEHNVMNALASMLVAKEFDVEYKEMPEAFQQLKLTQMR 320

Query: 327 -----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                GKR    LN        ++YNA+P SM+AAI +LS +   G G++I V GDM E+
Sbjct: 321 MEMMEGKRGEKILN--------DAYNASPTSMRAAIGLLSGL--QGYGKKILVAGDMLEL 370

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           G   +++H ++ + +    I  V+   F  LA + A
Sbjct: 371 GPNEENYHYEVGQEVQKGKIDLVFT--FGTLARQTA 404


>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes LO28]
          Length = 447

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 16  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 73

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 74  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 134 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 194 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 249 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 301

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 302 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 361 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 420

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 421 IKGNEWILVKGSYGMGLKDVVENLI 445


>gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
 gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
          Length = 485

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 211/455 (46%), Gaps = 44/455 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R+I   + F A+ G ++DGHD+I  AV +GA   +V+  +     S  IP   V+
Sbjct: 58  IATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRPI-----STDIPQLVVN 112

Query: 90  DVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D   AL +LA   R + K  T+IAITGS GKTT KEML      +  T    G+ NN +G
Sbjct: 113 DTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNNDLG 172

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP+ L  +     + I ELG +H+GEI + T +V+P +A I  I  AHL  F   E I  
Sbjct: 173 VPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGICQ 232

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKW 263
            KAEI+  L  +    +   D F   L     K  SH +G      FG   N D      
Sbjct: 233 TKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG------FG---NTDVSASHL 283

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E+S  ++ +  +  ++     G H   N L        L  D++  +  L    P 
Sbjct: 284 DVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIDINDIVVGLENARPA 343

Query: 324 EGRGKRYRCALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +GR       LN    G   LID++YNANP S++AA  VL+  +    G ++ VLGD+ E
Sbjct: 344 KGR-------LNSQLLGMHRLIDDTYNANPHSVRAAAKVLAAQT----GTQVMVLGDIAE 392

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLF 436
           +G+ + S H  L   ++   I+ +   G    + V   ++     I  H     D L  +
Sbjct: 393 LGDAAVSEHQSLGRTIATTGINVLLCVGEYAPYTVAGAQEI--SDISAHAFTDKDSLLQY 450

Query: 437 IQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
           +Q  L +       V+ K S S     LIN L+EE
Sbjct: 451 LQPYLQEPQAQPCTVLFKGSRSMEMETLINALVEE 485


>gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
 gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
          Length = 466

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 207/449 (46%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL   +     S++ +   G+           H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHTPQGS---SFVRLPFAGE-----------HNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++  +K L     ++ +G + R   + +     ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
 gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
          Length = 458

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 215/462 (46%), Gaps = 44/462 (9%)

Query: 20  GIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           G VP  Q  +  +  DSR +     F  ++G  +DGH F+  A ++G    VV  D    
Sbjct: 21  GAVPNLQQRLGPVCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDS--- 77

Query: 78  IGSLSIPV------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                IPV      + VDD L A  ++A   R    + ++AITGS GKTTT+E++  AL+
Sbjct: 78  ----DIPVPQSLLHWIVDDTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALA 133

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVI 189
            +    A IG+ NN +GVPLTL  + VD      + E+GM   GEI  L+    P IAVI
Sbjct: 134 PLGAVQASIGNNNNDVGVPLTL--LGVDEQHAAVVVEMGMRGPGEIERLSRCAEPEIAVI 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I  AH+      E IA+AK EI   L   G + +   D   +   A+  +  ++ +  
Sbjct: 192 TNIGTAHIGRLGSREAIAAAKCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVAL 251

Query: 250 FGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              + +++     L  +   + +    + L   S        G H A+N ++ + +   L
Sbjct: 252 VDDANDSEHVADDLGDYNPLTGR----ISLGNDSYNCPLE--GRHNARNFMLAIAVARTL 305

Query: 307 -TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A  D  +  L V  P  GR ++ +     G  T++DE+YNA+P ++ AA+ +L+    
Sbjct: 306 GVAPAD--LVQLKVEVPG-GRNRKRQI----GSLTILDETYNASPEAVFAALDLLAA--- 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH---IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
              GRR AVLG M E+G  S   H   ID A  L+L  +  V  +G    A+ DA  R  
Sbjct: 356 -QPGRRFAVLGTMLELGTDSVGLHRAVIDHAATLNLDGLVVV-ATGAEAKAMSDASSRWP 413

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                ET +     +   L  GD V++K+S      RL+ LL
Sbjct: 414 QFQQVETPEQAAEPLIEWLRPGDTVLLKASRGIALERLLPLL 455


>gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
 gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 216/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H+++QA+   + + I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V ++   VA+      P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  A-VVTLSEKEVANH-----PYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+   G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-APGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVIRFGQGAELEVTDLIERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAA 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIR--QAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            IS +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AISANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
           Clip11262]
 gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           innocua Clip11262]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 208/454 (45%), Gaps = 39/454 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 26  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFL---------NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           A AK EI  GL  +G +           N D  F +L   KS A  I  +    +++   
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTS 263

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAI 314
           F +  W+                +E+    IG H   N +  +     + I    + +A+
Sbjct: 264 F-ITNWE--------------PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSAL 308

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K +      E    R      +    +++++YN++P ++K  +     +   G+ + + V
Sbjct: 309 KNM------ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKYL-V 361

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMD 431
           L DM E+G+LS   H + AEVL    I  ++L G  + A K      I    V + +T +
Sbjct: 362 LADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFDTKE 421

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            L   + S +   + ++VK S   G   ++  L+
Sbjct: 422 SLETALLSEINGNEWILVKGSYGMGLKDVVENLI 455


>gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL J1-023]
          Length = 470

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 210/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  D+R I   + F    G   DGH+F+  A + GA       D+         PV 
Sbjct: 39  ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS  A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGDFRQLTFGKSDEAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A K      I    V + +T + L   + S 
Sbjct: 384 LSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAETKIGQGKVQHFDTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 INGNEWILVKGSYGMGLKDVVENLI 468


>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
 gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
          Length = 476

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 207/465 (44%), Gaps = 45/465 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G  IDSR +     F  ++G   DGH FI    +KGA  V+    +    G    P  
Sbjct: 28  IQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFEKGALAVLSEEKLENPAG----PYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L A+ K+A   R      ++ ITGSVGKT+TKEM+   L+         G+ NN 
Sbjct: 84  LVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTSTKEMIASVLAQKYNVLKTEGNLNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++  +    + E+G+S  GE+  L+ +  P I VIT I   HL N    + I
Sbjct: 144 IGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS--------------FFELLKAK--------SHALGI 244
             AK E F  L   G   LN DD               F+ + KA         +  L  
Sbjct: 204 LKAKTESFAHLTPDGIAVLNGDDDKLCDKKVVNGKPAVFYGIEKAAKVAETEEGTKTLAE 263

Query: 245 KTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           KT+Y+    +  D    K      S+++  EV     +MEV     G H   N L  + +
Sbjct: 264 KTVYAT-NVEAVDLTGTKAAIHYPSKETGGEV-----TMEVTIPIAGEHNVYNALAAVSV 317

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D   + +       GR       +++   T+ID+ YNANP SMKA+I VLS 
Sbjct: 318 ARELGLTCDEMKRGIESVQTIGGRSN----LIHKNGITIIDDCYNANPVSMKASIDVLS- 372

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---P 419
              +  GR+IAVLGDM E+G   +  H  + E  +   I  ++  G     +  A+    
Sbjct: 373 ---NAPGRKIAVLGDMGELGAEEKQLHYMVGEHFAGKGIDALYCVGTLSQEITKAVRANS 429

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +  VH+ E    L   +   +  GD V+VK+S+  GF  ++  L
Sbjct: 430 SATEVHHYEDKADLIKDLVKEVKSGDTVLVKASHFMGFPEIVKEL 474


>gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2
           ,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 473

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 219/475 (46%), Gaps = 30/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + + G S  I  P   V G + IDSR +AP   F A  G   DGHD+   AV+ 
Sbjct: 5   SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYARRAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                      V +   + +P   V+DV+GAL  LA A   R   T++ +TGS GKT+TK
Sbjct: 65  -------GAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAGKTSTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L     T    GS NN IG+P+T      + +  + E+G   +G IR+L  L  
Sbjct: 118 DLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAETEHLVLEMGARGIGHIRYLADLTP 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + +++ A  
Sbjct: 178 PRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASRTRA-- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  FG++  AD +  K +  ++ +   E+       +V     G H   N L    +
Sbjct: 236 --RVLLFGEAPEADVRGEKVRMTADGRPAFELHTPTGCSDVTMRLYGEHHVSNALAAAAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPAS---MKAAI 357
              L   V    +ALS    + G   R+R  + +     T+++++YNANP S      A+
Sbjct: 294 AHELGMSVTEIAEALS----EAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALRAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHV 411
           + + Q      GR  AVLG M E+G+ S + H  +  +    N+S +   G        +
Sbjct: 350 AAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQL 409

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A  +       VH S+    + L ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 410 GAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
 gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
          Length = 457

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 26  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455


>gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 466

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 212/455 (46%), Gaps = 30/455 (6%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V+G + IDSR +     F A  G   DGHD+   AV+ GA  V+           +
Sbjct: 23  PSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYADQAVRAGAVAVLAQR-------PV 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P   V+DV  AL  LA     R  AT++A+TGS GKT+TK+++   L     T    G
Sbjct: 76  GVPAIVVEDVQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           S NN IG+PLT      +  F + E+G   +G I +LT L  P I ++  +  AH+  F 
Sbjct: 136 SLNNEIGLPLTALTATEETRFLVLEMGARGIGHISYLTDLTPPKIGLVLNVGSAHIGEFG 195

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G E+IA AK E+ E L   G   LN DD     + +++ A     +  FG+S  AD +  
Sbjct: 196 GREQIAQAKGELVEALPAEGAAILNADDPLVRAMASRTKA----KVILFGESGEADVRAE 251

Query: 262 KWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             +   S Q    +     + EV     G H   N L    +   L         ALS  
Sbjct: 252 NVRLTDSGQPAFMLHTPSGASEVTMRLYGEHHVSNALAAAAVAHELGMSATEIATALS-- 309

Query: 321 HPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGD 377
             + G   R+R  + +     T+++++YNANP SM+AA+  L+ +   G+GRR  AVLG 
Sbjct: 310 --EAGSLSRWRMEVTERPDGVTIVNDAYNANPESMRAALRALAAM---GKGRRTWAVLGK 364

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMD 431
           M E+G+ + + H  +  +    N+  +   G        + A  +       VH S+   
Sbjct: 365 MAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQA 424

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + L ++S L  GDVV+VK+S S G   +   LL+
Sbjct: 425 AVDL-LRSELRPGDVVLVKASRSVGLESVAQALLD 458


>gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
 gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
          Length = 437

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 213/437 (48%), Gaps = 17/437 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R+I P   FFA+ G  ++G+ F   A++ GA L +V  D    I    I V  V 
Sbjct: 16  ISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIV--DEPIPIVDERIEV--VS 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L  LA   R + +  +I +TG+ GKTTTKE+L   LS     YA  G+ NNHIGV
Sbjct: 72  NVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +   ++  I E+G +H+GEI FL  + RP + +IT +  AHL  F   E +  A
Sbjct: 132 PLSVLAIDSAIELAIIEMGANHIGEIAFLCGIARPELGLITNVGKAHLEGFGSFEGVKQA 191

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E++E LE+  G +FL  D++   L  A +        Y   KS N   +L        
Sbjct: 192 KGELYEWLEEHKGVLFLQGDNNHL-LSMANNKTFKQIITYGLDKSNNISGELLSVNPVLN 250

Query: 269 QSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             W  ++  G   +VV  H  G +  +N+L  + +      + +   + ++ + P   R 
Sbjct: 251 LGWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGLYFGLNPEEINRGITAYSPTNNRS 310

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N    T+I + YNAN +SM AA+  L  I  H E +++++LGDM E+GE + +
Sbjct: 311 QITQTEKN----TVICDYYNANASSMWAALDNLESI--HAE-KKVSILGDMFELGEEAPT 363

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L E +    +      G +    +        + Y E++D     +Q   +D   V
Sbjct: 364 EHRRLIERIRGMKLYRKIFVGRNFFGQRQ---EEHDIEYYESLDAAKQALQEKPLDNTTV 420

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K+S    F  L+  L
Sbjct: 421 LLKASRGMAFEGLLQYL 437


>gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB900]
          Length = 466

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 206/449 (45%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++A+FQL                QG S+  +    G H  QN    +     L
Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSLVRLPFA-GEHNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++  +K L     ++ +G + R   + +     ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 467

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 220/442 (49%), Gaps = 15/442 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIPVFG 87
           I IDSR   P   F AI G + DGH +I  A   G    +V+   D++  +   SI    
Sbjct: 34  IVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILDQLDGSSIVC-- 91

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+   A+ +LA   + +    ++ ITGSVGKTTT++M+   +S+  +T     + NN  
Sbjct: 92  VDNTELAMGQLAKYYKNKFDIPVVGITGSVGKTTTRDMVYAVVSNKFRTLKNEKNLNNQF 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+  +    +  + E+GMS  GEI +L  +VRP IAVI+ I  +H+ +    E I 
Sbjct: 152 GVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHLGSQEGIF 211

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI +   +   + +N DD +   L+A+  A+   ++ SFGK       L+  +   
Sbjct: 212 KAKMEISDYFSEDSCLIVNGDDEYLSKLRAEKDAISY-SLCSFGKDWKNTIVLKSIENLD 270

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++   V+L+ K  E     +G H   N +  + +   L  ++D   + L  F     R 
Sbjct: 271 NKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSAILVGLRLGMNIDEIRQGLMNFVATGDR- 329

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +  +N G + +I++ YNA+P SM A++ VL   + + + R++A+LGD  EMG+  + 
Sbjct: 330 ---QNIINTGKYLVINDVYNASPDSMIASLKVL---ALNKDRRKVAILGDCLEMGDYEEE 383

Query: 388 FH--IDLAEV-LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            H  + L  V  S   I+    + F  +  ++      ++++ +T   L   +++ L D 
Sbjct: 384 GHRRVGLQSVRRSDVIITQGKAARFIGIEAQEHGFDLSNIYHFDTKKELIEDLKNILEDQ 443

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           D ++VK+S    F  ++N L E
Sbjct: 444 DAILVKASRGMAFEDIVNYLKE 465


>gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
 gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
          Length = 453

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 218/449 (48%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+RSIA    F A+ G  +D H+F   AV  GA  ++V   +      +++P  
Sbjct: 24  IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERAL-----DVNVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +   AL +L      +     +AITGS GKTT KEM+   LS+  +     G++NN 
Sbjct: 79  VVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R     D+ + ELG +H+GEI +   LV+P +A++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKPDVALVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRK--W 263
             AK EI++GL    T  +N D     L ++    L  K++ +F  ++ +ADF  R    
Sbjct: 199 KRAKGEIYQGLSAGYTAVVNLDSQGGALWQS---VLADKSVKTFSVTEHSADFYPRDIVL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E S++ V   G  + V    IG H   N L    +   + A +      L+  H  
Sbjct: 256 NAAGEASFVLVTPIG-DVAVKLGIIGKHNVGNALAASALAIEMGATLADIQHGLA--HLS 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + +G+     L     TLID+SYNA+  +MKAA+ +L   S      R  +LG+M E+GE
Sbjct: 313 KVKGRVDVTELTD-HITLIDDSYNASVPAMKAAVDLLGGFS----ATRWLILGNMAELGE 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E  + +   +V   G     + D        H++   D + +FI+  L  
Sbjct: 368 ESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDVCHGR---HFASHQD-MIMFIEQHLEQ 423

Query: 444 GD----VVVVKSSNSCGFYRLINLLLEEF 468
                 V++VK +NS G  +++  L E++
Sbjct: 424 QPDRTHVLIVKGANSAGMSKIVAALKEKY 452


>gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 472

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 217/478 (45%), Gaps = 56/478 (11%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           Q H +  +       + IDSR +     F A  G   DGHD+   AV+ GA  V+     
Sbjct: 16  QPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAERAVEAGAVAVLAAR-- 73

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 + +P   VDDV+ AL  LA AA  R   T++A+TGS GKT+TK+++   L    
Sbjct: 74  -----PVGVPAIVVDDVVAALGALARAAVERLGTTVVALTGSAGKTSTKDLIAQILERKA 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T    GS NN IG+PLT  R   +    + E+G   +G I +L  L  P I ++  +  
Sbjct: 129 PTVWTPGSLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYLAGLTPPRIGLVLNVGS 188

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AH+  F   E IA AK E+ E L + G   LN DD     + +++ A     +  FG++ 
Sbjct: 189 AHIGEFGSREAIAQAKGELVEVLPEDGAAVLNADDPLVRAMASRTKA----RVILFGEAP 244

Query: 255 NAD---------------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +AD               F L     CS+   + ++L G+     HH      A  +   
Sbjct: 245 DADVRGENVRLTDDGRPAFALHTPTGCSD---VTLRLYGE-----HHVSNALAAAAVAHE 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAI 357
           LG+     AD  +    LS          R+R  + +     T+++++YNANP SMKAA+
Sbjct: 297 LGMSVTEIADALSGAGTLS----------RWRMEVTERPDGVTVVNDAYNANPESMKAAL 346

Query: 358 SVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L+ +    +   GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGQEASW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+    + L ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 407 LQLGAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEKVALALLE 463


>gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes FSL R2-561]
          Length = 470

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468


>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 470

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468


>gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Micromonospora sp. L5]
 gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora sp. L5]
          Length = 469

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 218/475 (45%), Gaps = 52/475 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A+ G  +G  P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
           A+  GA + V+ T  V  +     P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AISAGA-VAVLGTREVPGV-----PMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   +  + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   + + ++
Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPDDGLAVLNADDPRVDAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
           + A     +  +G+S++AD +            S+  V  +G +   V  G+ G H   N
Sbjct: 234 TRA----RVVRYGESEHADVRAVDVTLDGRGRPSYTLVTPEGSAP--VRLGLTGRHQVSN 287

Query: 296 MLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L    +   + +   D+  A+  L +        +R          T+ID+SYNANPAS
Sbjct: 288 SLAAAAVGRELGLPLPDLAAALNELGLVST-----RRMDVFERPDGVTVIDDSYNANPAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A+  L+ +   GEGR +AVLG M E+G+     H  +  + +   +  + + G    
Sbjct: 343 TGVALRALASM--RGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVG---- 396

Query: 413 ALKDALPRSIHVHYSETMDG------LFLFIQSSLVD--------GDVVVVKSSN 453
             + A P    +H   T  G      + L  Q++ V+        GDVV+VK S 
Sbjct: 397 --EPAAP----IHEGATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR 445


>gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes Finland 1988]
          Length = 466

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 35  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 92

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 93  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 152

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 153 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 212

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 213 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 267

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 268 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 320

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 321 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 379

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 380 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 440 IKGNEWILVKGSYGMGLKDVVENLI 464


>gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
 gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
          Length = 459

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 217/450 (48%), Gaps = 25/450 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +     F  ++G   DGH ++  A   GA   +  +D    I   + P+ 
Sbjct: 26  VTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTNGAVASLWASDH--EITDQTHPLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            V+D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KTYA   ++
Sbjct: 83  VVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVTKTYA---NF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M  + +  + E+GM    ++ FL+ LV P IAVIT I  AH+  F   
Sbjct: 140 NNEIGVPVTLLNMESNTEAVVVEMGMDRFDQLDFLSKLVNPDIAVITMIGEAHIEFFGTR 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++IA AK EI  GL++ GT+  N D+    LL+ +   L  + +  FG+  + +      
Sbjct: 200 DKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLTQRQM-RFGRQLSNNLYATSV 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                Q    V  +    E     +G +   N L  + +  IL        +AL+     
Sbjct: 256 HDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELT 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R +  +    +    ++ + YN+NP + K  +  +++     +GRRIAVLGDM E+G+
Sbjct: 315 ENRAEWVKGKNGE---QILSDVYNSNPTAAKEVLKTIAETPV--DGRRIAVLGDMLELGD 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFI 437
            +   H  LAE +    I+ V+L G  +  LKD L         IH + +  +  L   +
Sbjct: 370 AAPKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADL 429

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++L   D+V++K+S+      ++  L  E
Sbjct: 430 TATLTGEDIVLLKASHGIHLEEVLTALKAE 459


>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
 gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
          Length = 451

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 222/476 (46%), Gaps = 45/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T + L++ +    + I         +GI  D+R I P E F A +G  +DGH+FI  A+ 
Sbjct: 6   TLNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFISSAIA 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V+ D      +  +PV  V + L A  KL    R R    +I +TGSVGKTTT
Sbjct: 66  RGAIAAIVDDDYE----NPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L +        G+YNN IGVP TL  +  + D+ + E+ M   G+I  L  + 
Sbjct: 122 KELIAAVLGTKGNVLKTYGNYNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAELAQIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT +  AH+      E IA AK E+   + K     LN+D+    LL A +   
Sbjct: 182 RPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNP---LLMATAAKF 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++G S   D Q        + + +EV      + +     G H A N L  L +
Sbjct: 239 WSGEVLTYGLS-GGDVQ----GSLVDNAIVEV----AGLRLPLPLPGRHNATNYLAALAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  +  +    +SV  P  GR +R+    +     ++DE+YNA P +M AA+ +L+ 
Sbjct: 290 AKVLGIEWSSLQAGVSVNMPT-GRSQRFSLPND---VLILDETYNAAPEAMLAALQLLAD 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413
                  R+IAVLG M E+GE S   H  + E      + ++ L G  VL          
Sbjct: 346 TPGK---RKIAVLGAMKELGERSAQLHQRVGET-----VRNLKLDGLLVLVDGEDAEAIA 397

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              + +P      +++ +  L  F+Q     GD ++ K+++S G  R+++ L  EF
Sbjct: 398 RSAEGIPSECFATHADLVARLTTFVQG----GDRLLFKAAHSVGLDRVVSQLRAEF 449


>gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
 gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
          Length = 485

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 226/482 (46%), Gaps = 48/482 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  DLL+   G +   V    V   ++ DSR + P   + A  G   DGH FI  A   G
Sbjct: 5   SLTDLLEITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDGARAAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSK--ATIIAITGSVGKT 120
           A L +    +         P   V+D + A+ K+A  + + L++K  A ++ ITGS GKT
Sbjct: 65  AVLSLAER-ITHDEERREHPAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVVGITGSAGKT 123

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   LS    T + IGSYN  +GVPLT+     +  + + E+G + +G + +LT 
Sbjct: 124 TTKDLLAGILSQAAPTVSPIGSYNGEVGVPLTVFSATEETKYFVIEMGATGIGHLNYLTD 183

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V PH+ V+  +  AH   F G+E I  AK E+ E L+  G   LN +D     +++++ 
Sbjct: 184 MVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEALDTEGIAILNAEDPRVARMESRAR 243

Query: 241 ALGIKTIYSFG----KSKNADFQLRKWKQ---CSEQSWMEVQLQ---GKSMEVVHHGIGY 290
           +     +  FG    K +NA      W      + +   E+ L+   G S  +    +G 
Sbjct: 244 S----QVRFFGTGAVKPENAGV----WASDVVVNAEGQPELTLEFPNGYSKRITSGLLGR 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCAL--NQGFFTLIDESY 346
           H   N+L      + L  D+D  + A  +    EGR  G R+R          ++I+++Y
Sbjct: 296 HHVSNILAAA--NAALALDIDPELIAAGL----EGRAAGSRWRMERLERADGVSIINDAY 349

Query: 347 NANPASMKAAISVLSQISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           NANP SM+AA+  L+++    +G    R  AVLG+M E+G+ S   H  L  +    NI 
Sbjct: 350 NANPESMRAALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLGRMAVRMNIK 409

Query: 403 HVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + + G      K A   ++         +Y E ++     ++  L  GD+ + KSSN  
Sbjct: 410 KLVVVG---RGAKPAYNSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGDIALFKSSNGA 466

Query: 456 GF 457
           G 
Sbjct: 467 GL 468


>gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2846]
          Length = 457

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+ +P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
 gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
          Length = 465

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 190/393 (48%), Gaps = 30/393 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  ++ +A  G   G  P+  ++    G++IDSR +     F AI G   + H FI   +
Sbjct: 15  TLRNITKACHGEYRG--PENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIPDTI 72

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KGA  V+ + D+    G    P   V+    AL   A   R      ++ ITGSVGKT+
Sbjct: 73  KKGAMCVISHEDL----GETDFPYILVESTGQALLDTAKLYRDSFDIKVVGITGSVGKTS 128

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   LS     +  +G++NN  G+P+T+  M       + E+G++H GE+R L+ +
Sbjct: 129 TKEMIASVLSQKYCVHKTLGNFNNEWGLPITIFEMNEKHQVAVLEMGVNHFGEMRRLSSV 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD   +LL+     
Sbjct: 189 ASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGSILLNGDD---DLLRDMGPV 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMT 299
            G+   + FG  KN  F     +      S   + L  G+S + +    G HM QN L  
Sbjct: 246 KGVDPEF-FGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCIVPLPGAHMVQNALAG 304

Query: 300 LGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
             +   + +  A++   I+ L       GR       +      ++D+ YNANP SM+A+
Sbjct: 305 TAVGYQLGLTPAEIKAGIEGLPSI---PGRNN----IIQTDKIIILDDCYNANPISMQAS 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           + VL+       GR++AVLGDM E+GE  +  H
Sbjct: 358 LDVLNMAI----GRKVAVLGDMGELGETGKELH 386


>gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36]
 gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 217/442 (49%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L++L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSNLAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++V  A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  ++S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
 gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
          Length = 424

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 192/385 (49%), Gaps = 32/385 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG+  D+RS+   + +FA+KG +++G+ F   A++ GA L +V+     +  S+      
Sbjct: 14  NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRSVL----- 68

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II ITGS GKTTTKE++   LS      A  G+ NNHI
Sbjct: 69  VDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNLNNHI 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    + GI E+G +H GEI+ L  + +P+   IT    AHL  F G E + 
Sbjct: 129 GVPLTLLTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++  L E    +F+N  D   E+   +S  +  KT   FG S++      ++   
Sbjct: 189 KGKSELYNYLRENNELVFINDQD---EIQVRQSANIVSKT---FGSSQS------EYPVY 236

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E     +++      +  + IG +   N+ + + + +     +      +  + P   R
Sbjct: 237 LEDGSGNLKITVGETTITSNLIGTYNFSNIAVAMAMGNHFDVPLTHIKNGIEKYVPSNNR 296

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     +++  + +I ++YNANP SM AA+  L     +     IA +GDM E+GE S+
Sbjct: 297 SQ----IIDKDTYKIILDAYNANPTSMAAALKNLQATGTNA----IAFIGDMFEVGETSK 348

Query: 387 SFH---IDLAEVLSLYNISHVWLSG 408
           + H   +DLA  L   NIS V+  G
Sbjct: 349 AEHQAILDLAHNL---NISKVYAIG 370


>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 465

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 193/389 (49%), Gaps = 11/389 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D +  I G  I    +  +  ISIDSR+I   E FFAIKG  +DGHDF++ A++ 
Sbjct: 3   IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRA 62

Query: 64  GAGLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            A   VV+ + V    ++     + GV+D   AL  LA   R      +I ITGS GKTT
Sbjct: 63  EAVGAVVDNEQVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTT 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+++   L +  KT    G+YNN  G+PLTL R+    +  + EL M  LG+I+ L  +
Sbjct: 123 TKDLVASVLETKFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGDIKTLCQI 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I V+T +   HL      E IA AK+E+ E L  TGT  LN DD +   +  ++ A
Sbjct: 183 AQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQMADETKA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                I  +G+    + Q  +     E      V  Q +   +     G +   N L  +
Sbjct: 243 ----EILYYGRESGNNLQASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALAAV 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   L  +++   + L+   P +  G R      +   TLI+++YNANP SM+A + +L
Sbjct: 299 GVGLKLGLNINEIQQGLA--EP-DLTGMRGEIKELKDDITLINDAYNANPTSMEAGLDLL 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH 389
             I    +G  IAVLGDM E+G  ++  H
Sbjct: 356 VDIGTD-KGGLIAVLGDMLELGSAAEEAH 383


>gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
 gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 216/456 (47%), Gaps = 44/456 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ID+R +     F A+KG  +DGHDF  +AV  GAG ++V+  ++     +  P  
Sbjct: 21  ITEVTIDTRQVTGGCLFVALKGERFDGHDFAENAVAAGAGALLVSKRLL-----VGAPQL 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN 
Sbjct: 76  VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNND 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  ++ AHL  F  +  +
Sbjct: 136 IGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGSLAGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLR 261
           A AK EIF GL   GT  +N D + +   +   H    K ++ F      D      ++R
Sbjct: 196 AQAKGEIFAGLPANGTAIINADSNDWPHWQETLHH---KRVWRFSSQAGEDIDFFASEVR 252

Query: 262 KWKQCSE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              Q +            +E+ L G+     H+      A  + M++G      AD+   
Sbjct: 253 ITAQATHFTLHSPFGTQAIELPLPGR-----HNIANALAAAALAMSVG------ADLAAV 301

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L+      GR    + A+ +    L+D+SYNAN  SM AA  VL+++     G R+ 
Sbjct: 302 RQGLTQLQAVPGRLFPIQLAVGK---LLLDDSYNANVGSMTAAAQVLAEMP----GYRVM 354

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V+GDM E+G+ +   H  + E      +  V   G     L DA     H    +T+   
Sbjct: 355 VVGDMAELGDTAIDCHRQVGEAAKHAGVDKVLSVGKLSQTLSDASSCGEHFQDKDTLAAR 414

Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              L ++  ++    V++K S S     ++  L E+
Sbjct: 415 VSELLLEHPII---TVLIKGSRSAAMENVVRALQEK 447


>gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
 gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 225/477 (47%), Gaps = 45/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T + L Q  QG  +        +  +S DSR I     F A+KG  +D H+F    V+ G
Sbjct: 5   TLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQVVEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V+  +      ++ P   V+D   A+ ++A   R +SKA ++ +TGS GKT+ KE
Sbjct: 65  ATALLVDHQL-----DVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGKTSVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L     T    G+ NN IGVPLTL R+  +  F + E+G +H  EI + T++V+P
Sbjct: 120 MTASILGQRGNTLYTAGNLNNDIGVPLTLFRLTDEYQFAVIEMGANHPHEIEYTTNIVKP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +  AHL+ F   E +A AK EI++GL + GT  +N  DS+ +  +  S     
Sbjct: 180 ETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTAIVNL-DSYSDKWQFGSR---- 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T++ +  ++ ADF     +     +   +      +E+     G H   N+L    +  
Sbjct: 235 QTVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEITLPLPGVHNIANVLAASALAI 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A ++   + ++      GR    R +  +    ++D++YNAN  SM AAI+VL+++ 
Sbjct: 295 SVGATLEDIKQGIATTKAVPGRLFPVRLSDTK---VVLDDTYNANDGSMIAAINVLAKMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLS----GFHV 411
               G RI V GDM E+G+ +   H           L +VLS+  +S +       G H 
Sbjct: 352 ----GYRILVAGDMGELGDYAHECHERVGLAAKQAGLDKVLSVGQLSEIISQSSERGEHF 407

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +D L R I            L  Q+ +V    ++VK S S     ++N L E F
Sbjct: 408 TVKQDLLTRLIP-----------LAQQNDVVS---ILVKGSRSSAMEDVVNALKECF 450


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 191/399 (47%), Gaps = 24/399 (6%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL A QG       Q    G S D+R I P E F A++G   DGHD++  A+++GA  ++
Sbjct: 7   LLAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLL 66

Query: 70  VNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V T  + S+          I    V+D   AL   A     R + TIIA+ G VGKT+ K
Sbjct: 67  VETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E +   LS    T+    +YN+ +G+PL+L R+    ++ + ELG  H GE+  L  +V+
Sbjct: 127 EAIASVLSRNYATFRSWKNYNDLLGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMVK 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHAL 242
           PHI ++T +AP  L  F  +E +A   +E+   L   G  +LN  D+   E++       
Sbjct: 187 PHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDARLVEIVAHYQQQR 246

Query: 243 G--IKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           G  +  I   G  +  + Q+R  W+  S    +E + +  ++ +    +G      ML  
Sbjct: 247 GSAVPDIRPLGIREINETQIRVGWEGLS--FTLEQEGEMGTLTLASRLLGRQHISTMLAA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT--LIDESYNANPASMKA 355
             I        +   +AL    P EGR       LN   G +   L+D+++NA+P S+ A
Sbjct: 305 YRIGRACGMSAEEVSEALEQLGPIEGR-------LNPLPGVYESRLLDDTHNASPGSVLA 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  L +++  G G+RIA+LG+M  +G     ++  + E
Sbjct: 358 GLQALDELTNEG-GKRIAILGEMLNLGYYQDDWYEQIGE 395


>gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 460

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 193/382 (50%), Gaps = 13/382 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ D+R I P+  F A+ G ++D H F+  A+ KGA  +++            IP  
Sbjct: 30  IHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEKQCYPK---NVIPQI 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +   AL K+A   R ++ AT+IAITGS GKT+ KEM +  L +   T +   + NN+
Sbjct: 87  IVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCGNTISTFQNLNNN 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +     + I ELG ++  +I + T + +P+IA+I  I  +HL+ F  +  +
Sbjct: 147 IGVPLTLLNLNKSHKYAILELGANYPKDIEYTTKITKPNIALINNIYHSHLAGFKSLFGV 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIF GL K G    N D +++   K K + L  K I +F   KN+          
Sbjct: 207 AQAKQEIFLGLRKNGIAIYNKDSNYWS--KWKKNLLTQKII-NFSIKKNSTIFASNITTS 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S  ++      + V    +GYH   N L    I   +   ++     LS     + R
Sbjct: 264 NQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINIPLEIIKIGLSSLPILKNR 323

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R  LN+ + T+I+++YNAN ASM  AI +L  IS    G ++ V GDM E+G+   
Sbjct: 324 LQIIR--LNK-YKTIINDTYNANTASMIVAIKILENIS----GYKLFVAGDMLELGKNDV 376

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
            +H  +   +   NI+ V+  G
Sbjct: 377 LYHKIIGNTIYNSNINEVFSIG 398


>gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 471

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 211/458 (46%), Gaps = 38/458 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GIS DSR++ P + + A++G  +DGH FI  A+  GA  V+  T++      + +P   
Sbjct: 25  TGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDAGAAAVL--TEVFPE--RVRVPTLW 80

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYN 144
           V D   AL  LA   R R +  +IA+TGS GKTT KEM+    +A    +  +A  G++N
Sbjct: 81  VPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAKEMIAAILVAHLGAEAAFATRGNFN 140

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVPLTL R+      G+ E+GM+H GEI  L  + +P +A++      H     G E
Sbjct: 141 NDIGVPLTLLRLSDAHRMGVVEMGMNHPGEIAGLAAMTQPSVALVLNAQREHQEFMDGPE 200

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-----KSKNADFQ 259
             A     +F  L  +G      DD    + +A +     + + +FG      +  AD Q
Sbjct: 201 ATARENGTVFGALAASGVAVFPGDDPCTPIWQALAQG---QRVLNFGLVADEAALEADVQ 257

Query: 260 LRK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                          + +       +L    +++  +  G H  +N L        L   
Sbjct: 258 STPDAGTPYLSVAAARDARPEHFRARLGEALVDIRLNIAGRHNVRNALAAAACTLALGVP 317

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGE 368
           V+  ++ L+ F P  GR +R   A  QG   LID++YNANP SM+AAI VL+ Q +P   
Sbjct: 318 VEAIVRGLAAFEPVSGRLRRTHTA--QG-VPLIDDTYNANPDSMRAAIDVLADQPAP--- 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
             R+ V+GDM E G  +++FH ++ E      I  VW  G  + A   A      V Y E
Sbjct: 372 --RLMVMGDMGETGAQAEAFHREVGEYAVSRAIEQVWAVGKDMKAAAQAG----GVQYWE 425

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           T++ L      +      ++VK S      R++    E
Sbjct: 426 TVEALLAEHPQAPAGIASILVKGSRFMKMERVVRAWAE 463


>gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 220/478 (46%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+   + + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V ++   VA+      P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  A-VVTLSEKEVANH-----PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   DS  E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADSIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG        D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGPGAELEITDLVERKNSLTFKANFLE---QALDLPVT----GKYNATNAMIAAY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVDTVIFYGEDIAELSQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVFYFKKTADEDQFEDLVKKVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
 gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
          Length = 406

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 196/420 (46%), Gaps = 19/420 (4%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           G  +DGHDFI  A  KGA   VVN      I  + IP F V   L AL K+A A R    
Sbjct: 2   GERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQFVVVSPLMALAKIAAAHRQEMS 57

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             IIA+TGS GKTT KEM+   L   + ++A  G+ NNHIGVPL++  +     + +FEL
Sbjct: 58  CPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNHIGVPLSMLALNKQHRYAVFEL 115

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G +H GEI     +V+P +++I  IAPAH+  F  I+ +A +K EI +GL  TG   +N 
Sbjct: 116 GANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPTGVAIVND 175

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHH 286
           DD++          +  K I  F     AD   +  +     ++   + L    +E+   
Sbjct: 176 DDAYAHFW---DDLIADKKILRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQ 232

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L        +    +   + L+ F   +G   R      Q   T+ID++Y
Sbjct: 233 VPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKG---RMTMLSGQNQSTVIDDTY 289

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S+  A+ VLS       GR+I V GDM E+GE +   H ++        I  +  
Sbjct: 290 NANLRSVLTALEVLSGRP----GRKIFVFGDMGELGEWTTQHHREVGIAARQLGIDKLMS 345

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G H      A       H+  + + L   +++ L     V+VK S S     +++ L++
Sbjct: 346 CGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLTPDTTVLVKGSRSSAMENVVHRLVQ 403


>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale M104/1]
          Length = 464

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 219/479 (45%), Gaps = 42/479 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           TF ++ +A +G  IG   Q    + G  IDSR +     F  IKG   DGH FI    ++
Sbjct: 10  TFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFIPTVFEQ 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+   ++    G    P   V+    A+ KLA   R      ++ ITGSVGKT+TK
Sbjct: 70  GAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L+ +  
Sbjct: 126 EMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRLSTMSC 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + VIT I   HL      + +  AK E FE +       LN DD     ++  +   G
Sbjct: 186 PDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTVN---G 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME------VQLQGKSMEVVHHGIGYHMAQNML 297
              IY +GK   +D     +    E    +      V  +G+  +   H  G H   N +
Sbjct: 243 KPAIY-YGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGE-FDAHIHIPGEHNVYNAM 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYNANPAS 352
               +   L          L++   K G  K    A    F      T+ID+ YNANP S
Sbjct: 301 AAAAVGLQL---------GLTIAEIKAGIEKAETIAGRTNFIKTHGMTVIDDCYNANPVS 351

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           MK++I VLS    H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G   L
Sbjct: 352 MKSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAG--EL 405

Query: 413 ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           A + A         + +HY E  + +   + S + +GD ++VK+S+   F +++  L E
Sbjct: 406 AKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464


>gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
 gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
          Length = 468

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 194/389 (49%), Gaps = 45/389 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S D+R+++    F A+KG  +D HDF  +A+  GA  ++V+  +      + +P  
Sbjct: 24  VANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMDNGAAALLVSRHL-----PVELPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D   AL  L    +   +       IA+TGS GKTT KEM    LS      +  G+
Sbjct: 79  VVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGSCGKTTVKEMAAEILSQKGNVLSTAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+  + +F + ELG +H  EI + T+LV+P +A++  +A AHL  F  
Sbjct: 139 FNNDIGVPLTLLRLTAEHEFAVIELGANHQQEIAYTTNLVKPQVALVNNLAAAHLEGFGS 198

Query: 203 IEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  +A AK EIFEGL          T  +N D +   + +       +KT +S     +A
Sbjct: 199 LAGVAKAKGEIFEGLTAPLNDSGLSTAIINVDSNDLAMWQPLLAQHAVKT-FSL-TDIDA 256

Query: 257 DFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN------MLMTLG-IVSILTA 308
           DF        SE ++   ++    ++++     G H   N      + MT+G  +  + A
Sbjct: 257 DFSATDIFINSEGRACFTMRTSAGTIDITLTLAGIHNVSNALAAAALAMTVGATLEQVKA 316

Query: 309 DVDTAIKA---LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            ++  +     + V HP+EG               LID++YNA+ AS+KAAI +L+  + 
Sbjct: 317 GLEQVVNVKGRVDVSHPREG-------------LRLIDDTYNASVASVKAAIDLLASFT- 362

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
              G+R  VLGDM E+GE S S H ++AE
Sbjct: 363 ---GQRWFVLGDMAELGEESASLHREVAE 388


>gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes J0161]
          Length = 457

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 26  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + +L DM E+G+
Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-ILADMLELGD 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455


>gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter sp. PRwf-1]
 gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. PRwf-1]
          Length = 505

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 205/435 (47%), Gaps = 45/435 (10%)

Query: 4   LWTFHDLLQA---IQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +WT   LL A   + G  IG+            I  D+R I   + F AI G ++DGH F
Sbjct: 12  IWTPEQLLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSF 71

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115
           +  AV+KGA   +V+      +  +++P   VDD   A  ++A   R +     +IA+TG
Sbjct: 72  VASAVEKGAIATIVSQ----PLSEVNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTG 127

Query: 116 SVGKTTTKEMLTIALSSIKKTYACI--------GSYNNHIGVPLTLARMPVDVDFGIFEL 167
           S GKTT KEML    + ++   A +        G+ NN  GVP+ L  +     + + EL
Sbjct: 128 SSGKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLEL 187

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G +H+GEI +   +V+P +A I  I  AHL  F G + IA  KAEI++ L +  T  +  
Sbjct: 188 GANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQPLTQASTAVVPC 247

Query: 228 DDSFFELL--KAKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQ--L 276
           DD + + L   AK H     TI  FG        +K       + K  + QS  ++   +
Sbjct: 248 DDDYSDQLMSTAKQH---TDTIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAI 304

Query: 277 QGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +GK+   + V+    G H   N L             +   + L+     +GR  R R  
Sbjct: 305 EGKAPAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRL- 363

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   +ID++YNANP SM+AA  VL+      EG RI VLGD+ E+G+ + S H  L 
Sbjct: 364 ---GQHHIIDDTYNANPNSMRAAADVLAA----QEGTRILVLGDIGELGDDAVSEHYKLG 416

Query: 394 EVLSLYNISHVWLSG 408
           E ++   + ++  +G
Sbjct: 417 EAIANKAVDYMLCAG 431


>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 417

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/390 (34%), Positives = 192/390 (49%), Gaps = 30/390 (7%)

Query: 9   DLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++ QA+ G  +   GI   G        DSR +     F AI G   DGHDF+     +G
Sbjct: 14  EIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQG 73

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGK 119
           A   +V+ + VA  G   +P   VDD + AL +LA     R +A     T+I ITGSVGK
Sbjct: 74  AVAALVDHE-VADAG---VPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H+GEI  LT
Sbjct: 130 TTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHVGEIANLT 189

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D     +    
Sbjct: 190 SLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHVAAMSGI- 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV--VHHGI-GYHMAQN 295
            A G    +   + +  D  +     +C E      +L+    E   V+ GI G H   N
Sbjct: 249 -APGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMN 307

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANP 350
            L    +   L   +D     L+       R   +R A++     +  FTLID+S+NANP
Sbjct: 308 ALAAATVAHRLGMPLDRIAAGLADVK----RISPHRMAVSAIVKPEARFTLIDDSFNANP 363

Query: 351 ASMKAAISVLSQISPHGEGR--RIAVLGDM 378
            SMKA +  L +   + E +  RIAVLG M
Sbjct: 364 DSMKAGLDGLIRWHANDERQPFRIAVLGAM 393


>gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 457

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 216/443 (48%), Gaps = 33/443 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +    +         P   VDDVL
Sbjct: 32  DSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGATATLSERPVAEG------PYVLVDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A   LA     ++   ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  AAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ + +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKPKTGIVTLVGEAHLEFFGSRTEIAKGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +G++K G + +  D    + L  +      + +  FG   +AD  L + ++  +    
Sbjct: 205 IADGMKKGGLLLVPADKIVNDFLPDQ------QKVVRFG--PDADICLTRLEERKDSLTF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYR 331
           E     +++++   G  Y+    M+ +   V++     ++AI+ A +       R + ++
Sbjct: 257 EANFLEQAIDLPVTG-KYNATNAMIASY--VALQEGVSESAIRQAFAQLELTRNRTE-WK 312

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A N     ++ + YNANP +M+  +   S I     GR+ AVL DM E+G  S+  H  
Sbjct: 313 KAANGA--DILSDVYNANPTAMRLILETFSAIPASQGGRKAAVLADMKELGADSKLMHGA 370

Query: 392 LAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHY------SETMDGLFLFIQSSL 441
           +   L+   I+ ++L G  + AL    ++  P +  VHY       +  + L   +++ L
Sbjct: 371 MITSLNPEVITDLFLYGEDMEALYVYAREIYPPN-RVHYFVKNADKDQFEDLTKTVKTWL 429

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
              D +++K SNS    +L+ +L
Sbjct: 430 QSSDQILLKGSNSMKLDKLVEVL 452


>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
 gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
          Length = 470

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + +L DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-ILADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468


>gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
 gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
          Length = 504

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 149/482 (30%), Positives = 218/482 (45%), Gaps = 46/482 (9%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           PQ  V G +  DSR I P   F A+ G   DGHDF   A+  GA L++V    V     L
Sbjct: 23  PQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRP-VEQPALL 81

Query: 82  SIPV-----------FGVDD------VLGALNKLA------VAARLRSKATIIAITGSVG 118
           + PV           F  D       VL A++KLA      +AA       ++ +TGS G
Sbjct: 82  AAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTDVLAAE--EGMVVVGVTGSAG 139

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L    +T A  GS+NN IG+P T  R   D  F + E+    +G I+ L
Sbjct: 140 KTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFLVSEMSARGVGHIQHL 199

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELL 235
           T +  P + V+  +  AHL  F   + IA AK E+ E L      G   LN DD     +
Sbjct: 200 TTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEALPAAADGGLAVLNADDDKVAAM 259

Query: 236 KAKSHALGIK--TIYSFGKSK-NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             ++ A  ++  T  + G +   AD+     +    +  S+M     G+ + V     G 
Sbjct: 260 DKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPVGEPVRVELSVFGA 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L    +   +  D  T    LS            R   + G  T+I++SYNANP
Sbjct: 320 HQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMDVRTRESDG-VTIINDSYNANP 378

Query: 351 ASMKAAISVLSQISPHGEGRRI----AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            SM+A I  L+  +   +GRR     AVLG M E+GE +   H +L  VL+   I H  +
Sbjct: 379 ESMRAGIDALAYTA---KGRRDAASWAVLGQMGELGEDASDEHAELGHVLAQRRIDHAVI 435

Query: 407 --SGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +G +  AL +A   S +     E +DG   ++  SL   DVV++K+S S G + +   
Sbjct: 436 VGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQDVVLIKASYSDGLWAVAEG 495

Query: 464 LL 465
           LL
Sbjct: 496 LL 497


>gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 504

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 149/482 (30%), Positives = 218/482 (45%), Gaps = 46/482 (9%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           PQ  V G +  DSR I P   F A+ G   DGHDF   A+  GA L++V    V     L
Sbjct: 23  PQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRP-VEQPALL 81

Query: 82  SIPV-----------FGVDD------VLGALNKLA------VAARLRSKATIIAITGSVG 118
           + PV           F  D       VL A++KLA      +AA       ++ +TGS G
Sbjct: 82  AAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTDVLAAE--EGMVVVGVTGSAG 139

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L    +T A  GS+NN IG+P T  R   D  F + E+    +G I+ L
Sbjct: 140 KTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFLVSEMSARGVGHIQHL 199

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELL 235
           T +  P + V+  +  AHL  F   + IA AK E+ E L      G   LN DD     +
Sbjct: 200 TTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEALPAAADGGLAVLNADDDKVAAM 259

Query: 236 KAKSHALGIK--TIYSFGKSK-NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             ++ A  ++  T  + G +   AD+     +    +  S+M     G+ + V     G 
Sbjct: 260 DKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPVGEPVRVELSVFGA 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L    +   +  D  T    LS            R   + G  T+I++SYNANP
Sbjct: 320 HQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMDVRTRESDG-VTIINDSYNANP 378

Query: 351 ASMKAAISVLSQISPHGEGRRI----AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            SM+A I  L+  +   +GRR     AVLG M E+GE +   H +L  VL+   I H  +
Sbjct: 379 ESMRAGIDALAYTA---KGRRDAASWAVLGQMGELGEDASDEHAELGHVLAQRRIDHAVI 435

Query: 407 --SGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +G +  AL +A   S +     E +DG   ++  SL   DVV++K+S S G + +   
Sbjct: 436 VGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQDVVLIKASYSDGLWAVAEG 495

Query: 464 LL 465
           LL
Sbjct: 496 LL 497


>gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
 gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
          Length = 473

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 210/449 (46%), Gaps = 28/449 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR +AP   F A  G   DGHD+     Q+              +G   +P   VD
Sbjct: 31  VVIDSREVAPGSLFAAFAGERVDGHDY----AQRAVEAGAAAVLAARPVG---VPAIVVD 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV+GAL  LA AA  R   +++A+TGS GKT+TK+++   L     T    GS+NN IG+
Sbjct: 84  DVVGALGALARAAVERLGTSVVALTGSAGKTSTKDLIAQLLQRHGPTVWTPGSFNNEIGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT      + +  + E+G   +G IR+LT L  P I ++  +  AHL  F   E IA A
Sbjct: 144 PLTALSATAETEHLVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHLGEFGSREAIAQA 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K E+ EGL + G   LN DD     + +++ A     +  FG++  AD +  K +   + 
Sbjct: 204 KGEMVEGLPEDGCAVLNADDPLVRAMASRTKA----RVLLFGEAPEADVRGEKVRMTPDG 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +   E+       +V     G H   N L    +   L   V    +ALS    + G   
Sbjct: 260 RPVFELHTPTGCSDVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALS----EAGTLS 315

Query: 329 RYRCALNQ--GFFTLIDESYNANPAS---MKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           R+R  + +     T+++++YNANP S      A++ + Q      GR  AVLG M E+G+
Sbjct: 316 RWRMEVTERGDGVTVVNDAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGD 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            S + H  +  +    N+S +   G        + A  +       VH S+    + L +
Sbjct: 376 ASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 434

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +S L  GDVV+VK+S S G  ++   LLE
Sbjct: 435 RSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
 gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
          Length = 457

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 209/448 (46%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A   GA       ++ A    +     
Sbjct: 26  LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  +LA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L++L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+   G++ L   D   +L    +       +  FG    A+  + +  + 
Sbjct: 200 AQGKMQMQDGMPD-GSLLLVPCDPIVDLFLPSNLE-----VVRFGDG--AELTVSELTEY 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +      + L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   L+   I  V   G  +  L     +     HV+Y       +  D +   
Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQ 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+ SL + D +++K SNS    +++  L
Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453


>gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
 gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
          Length = 504

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 209/455 (45%), Gaps = 32/455 (7%)

Query: 33  DSRSIAPQEAFFAIK-GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           DSR +  +   +  K G   DGHDFI  A+  GA  V+      A  G+ + P   V+D 
Sbjct: 33  DSREVTAEGTLYVAKPGERADGHDFIDAALGAGAAAVLAERATHAPDGA-AHPAIIVEDA 91

Query: 92  LGALNKLA--VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           + A+  LA  +  R+R  S  T+I ITGS GKTTTK++L   L++   T A +GSYN  +
Sbjct: 92  VLAMGALAREIVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEV 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R  +D    + E+G  H+G I +L  +VRP I V+  +  AH  +F G+  IA
Sbjct: 152 GVPLTVFRAELDTRSLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIA 211

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---------LGI-KTIYSFGKSKNAD 257
             K E+ E L   G   LN DD     + A++ A          G+ +        + + 
Sbjct: 212 RTKGELVEALGPDGVAVLNLDDERVAGMAARTAAPITWFTADERGVARAAEDVAAGRASG 271

Query: 258 FQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVD 311
               +  +  +Q      LQ G     V H +     G H   N+L           D  
Sbjct: 272 LVAARDVRADDQERPLFDLQVGTDEAAVRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPA 331

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L    P   R +  R     G  T+I+++YNANP SM+AA+  L+ +     GRR
Sbjct: 332 EIARGLDGLGPAS-RFRMERTDRADG-VTIINDAYNANPESMRAALRTLATLG-RSSGRR 388

Query: 372 I-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH 425
             AVLG+M E+G+     H  + E +   NI+ + + G      ++ AL +        H
Sbjct: 389 TWAVLGEMLELGDARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEG-SWGEEAH 447

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           + +       F+   L  GD+V+VKSSN  G   L
Sbjct: 448 FVDDAAQAEAFLTEHLRPGDLVLVKSSNGVGLAAL 482


>gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Weissella cibaria
           KACC 11862]
          Length = 454

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 204/453 (45%), Gaps = 36/453 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V   + DSR       F  +   + DGHD++  AV  GA + +   D         +P  
Sbjct: 24  VTSTTFDSRKAEAGSLFVPLVAAN-DGHDYVASAVANGATVTLWQADHPNV--PTDVPTL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  +LAV    + +  ++AI+GS GKTTTK+ +    +S  KT     ++NN 
Sbjct: 81  VVADTLVAFQQLAVYYLKQVQPKVVAISGSNGKTTTKDFVAAIGASTFKTVKTPANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP T+  MP D +  + E GM   G++ FL+ +V P IAV+T I  AH+  F   E I
Sbjct: 141 IGVPTTILSMPADTELLVIEFGMDRPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K EI  GL+  G +  N D+    LL+ ++         +FG + + D         
Sbjct: 201 ADGKMEIIAGLQPNGVLVYNGDEP---LLRERAGQHAFLHTATFGLNPDNDLY------- 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMA-------QNMLMTLGIVSILTADVDTAIKALSV 319
              S + +   G + +     + YH+         N L  + +  +L    D   +AL+ 
Sbjct: 251 --ASTIAMNPVGATFQTDKSAMTYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALA- 307

Query: 320 FHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               E      R     G F   ++ + YN+NP + K  +   ++      GRRIAVLGD
Sbjct: 308 ----EAPITENRTEWLAGNFGGKILSDVYNSNPTAAKEVLHFFAETPV--TGRRIAVLGD 361

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDG- 432
           M E+GE   + H  LAE L    I HV+L G  + +L+D L    P      YS+     
Sbjct: 362 MLELGEAGPALHASLAEKLDPATIQHVYLVGDIMASLEDVLSVNYPAGTVKRYSKDDKAT 421

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L   +Q+ L   D V++K S+      ++  L+
Sbjct: 422 LIADLQADLTADDAVLLKGSHGIHLEEVVTALV 454


>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 468

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 226/483 (46%), Gaps = 41/483 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   +++A  G  +   P   + GIS D+R+I   + F A++G  +DGH FI  A
Sbjct: 1   MEPI-SLSKIIEATGGTLLSGTPDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +V+ +    + S +I +  V D L  L  +A   R      +IA+TGS GKT
Sbjct: 60  FKKGAIGAIVSRE----VESKNI-IIKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   KT    GSYNN +GVPLTL  M       + E+  + LG I+ L  
Sbjct: 115 TTKEMLGYILTREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGGIKRLCE 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P + V+T I   HL      E +   K+E+ E L + G   LN DD +   +K  S 
Sbjct: 175 IAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLKMKEISR 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K I +FG    ++F     +     +++E  L   +  V  + I Y    N L  +
Sbjct: 235 T---KRIVTFGVENKSEFSASNIRVG--DTFLEFTLNN-NYRVKLNTISYCNVYNGLAAI 288

Query: 301 GIVSILTA-DVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASM 353
            +  ++    ++  I  L  F     R +        R   N+    +I++ YNANP SM
Sbjct: 289 AVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNANPQSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHV 404
           + A+  + +++ +    +IA+LG+M E+GE +  FH  + ++         +++ +++  
Sbjct: 349 QEALVAVGKMNSY--TNKIAILGEMLELGEKAPEFHYQIGKICADCGFDMLITVGDLAQY 406

Query: 405 WLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G    A  + +PR    + V+  E  D L   ++     GD+V++K S       ++
Sbjct: 407 MAHG----AEDEGMPRENIFVSVNNVEASDRLLRILRP----GDIVLIKGSRGMKMEEIV 458

Query: 462 NLL 464
             L
Sbjct: 459 ERL 461


>gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
 gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
          Length = 456

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 221/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + + I P   +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEIA------NHPYILVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEIIDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+  +  H +  R +  ++ A N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIRQ-AFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGINDQILLKGSNSMNLAKLVESLENE 455


>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
 gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
          Length = 452

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 215/465 (46%), Gaps = 25/465 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +L+A +G S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVLEATKGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 62

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A G +V     V  I  +      VD+ L A   LA   R R    ++AITGS GKTTTK
Sbjct: 63  ATGAIVEKGRSVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  
Sbjct: 118 EMVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT +  +H+      E IA AK E+   L +     LN DD +   +KA      
Sbjct: 178 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPY---VKAMDRLAK 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            KTI ++G  +NA       +   +      +   +  ++    IG H   + L  +   
Sbjct: 235 GKTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +T  K LS F    G   R      +    L D +YNANP+SM  AI  L Q+
Sbjct: 294 RVLGIKSNTIRKGLSEFS---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419
                 R+IA+LGDM E+G+ S+  H ++  +L+    S V+  G    F     K A  
Sbjct: 350 EGK---RKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +   +    M   +  I+     GDV++VK S      R++  L
Sbjct: 407 TTFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448


>gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
 gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
          Length = 457

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 215/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+   + + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVEG------YPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSKLAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVEDYLPTD------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV- 303
           K +  FG+   AD ++    +  +    +    G+++++     G + A N ++   +  
Sbjct: 231 KKVVRFGQG--ADLEVTDLIERKDSLTFKANFLGQALDL--PVTGKYNATNAMIAAYVAL 286

Query: 304 --SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +    +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S
Sbjct: 287 QEGVSEEQIHQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AILANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
 gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
          Length = 457

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 210/431 (48%), Gaps = 35/431 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+ +P   V 
Sbjct: 28  INTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQLVVK 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNN 145
           D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G++NN
Sbjct: 84  DTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGNFNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  +  
Sbjct: 144 DIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLVG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKW 263
           +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ ++  
Sbjct: 204 VVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSVKNV 255

Query: 264 KQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318
            Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++  S
Sbjct: 256 -QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLEQRS 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  + DM
Sbjct: 314 -----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCVADM 363

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L   I+
Sbjct: 364 KELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVPLIE 423

Query: 439 SSLVDGDVVVV 449
           + L     VVV
Sbjct: 424 NQLQQNKKVVV 434


>gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 459

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 178/365 (48%), Gaps = 17/365 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GISIDSR+I     +  I G  +DG  FI      GA   +++ +      S+SIP  
Sbjct: 27  IKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSGAVAFLIDENYKIP-KSISIPFV 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  LA A R      IIAITGS GKTT+K ++   LS   K     G+ NN 
Sbjct: 86  KVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKNLIHSVLSEKYKVEKTQGNLNNE 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL         G+ E+G    GEI  LT++ +P +A+IT I  AHL      E I
Sbjct: 146 IGVPLTLLDFSDKTQIGVVEMGTEDFGEISLLTNIAKPDMAMITNIGDAHLLKLKSREGI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWK 264
           A AK EI EGL+  GT   N DD   E+LK    S+ +  KTI S+GK    +F++  + 
Sbjct: 206 AKAKLEILEGLKADGTFIYNGDD---EILKKVLPSYTIKQKTI-SYGKEDGVNFKV--YP 259

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +    ++ +   + +  +V    +G H   N  + + I  +     +     L+      
Sbjct: 260 KEFSSTYTKFSYENEDYKVPL--LGTHQVYNGALAVLIGKLFNLSYEEIDNGLAKVSNNA 317

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +     + +  F ++D++Y +NP S+K  + +   +   G   +I VLGDM E+G+ 
Sbjct: 318 NRNE----LIERNGFDILDDAYKSNPQSLKQGLELAGFLD--GYLNKIVVLGDMLELGDG 371

Query: 385 SQSFH 389
            ++ H
Sbjct: 372 EKNLH 376


>gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
 gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
          Length = 451

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 222/441 (50%), Gaps = 29/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+    E F A++G  +DG +FI   +++     + N +      +    V    
Sbjct: 29  VNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ--KYNARYAVVESGK 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
             L  L+KL +    +   T +AITGS GKTTTK+++   L +     A +   G+YNN 
Sbjct: 87  KFLIELSKLILK---KLSLTKVAITGSNGKTTTKDLIVHFLKNKFNDDAVLFTKGNYNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PL++ +      F +FE+G +H GEI  L  ++RP+I++IT I  AH+ NF   E+I
Sbjct: 144 IGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNISIITNIGDAHIGNFGSKEKI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K +IF  L+      LN DD +F++L   + + G     S   + N D  +  +K C
Sbjct: 204 AEEKKQIFNFLKTNELKILNKDDEYFQIL---NQSPGKTFCIS---NNNDDSDVLSFKSC 257

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E + +E+  + +S+++     G H  QN  +    +  +  D     K         GR
Sbjct: 258 -ELNMIELTHKFQSIKIKFQLTGQHNLQNFAIACAALINIGIDFQELEKYFGNLESTNGR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            K+Y    N     LID+SYN+NP+S+ +AI  L+Q     E  +I ++GDM E+G+L+ 
Sbjct: 317 FKKYIFKDN---IELIDDSYNSNPSSLISAIDHLNQ----SEKNKILIIGDMGELGQLTD 369

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVD 443
            +H+ + E +    I+ V   G    A K A+ +   ++ +++S T + L      ++  
Sbjct: 370 QYHLQIIEEILKTKINIVLTMG---KAFKAAIKKNNENLILNFS-TYEDLLDKALPAIKK 425

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
             +++VK+S   GF  +++ L
Sbjct: 426 DTIILVKASRFMGFENIVSQL 446


>gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 457

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 216/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+   + + I     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A         VA++    I   P   VDDVL A   LA     ++   + A+TGS GKTT
Sbjct: 63  A---------VATLSEKEIANHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+ML   LS+  KTY   G+YNN IG+P T+  MP + +  + E+G  HLG+I  L+ L
Sbjct: 114 TKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKLVLEMGQDHLGDIHLLSEL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P  A++T +  AHL+ F    EIA  K +I +G+   G++ L   D   E     ++ 
Sbjct: 174 AHPKTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGM-APGSLLLAPADPIVE-----AYL 227

Query: 242 LGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              K +  FG+       D   RK     + +++E   Q   + V     G + A N  M
Sbjct: 228 PADKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-M 279

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               V++     +  I+    F   E    R           ++ + YNANP +MK  + 
Sbjct: 280 IASYVALQEGVSEEQIR--QAFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 440

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 199/429 (46%), Gaps = 27/429 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I  DSR I   + F  +KG  Y GHDFI  A   GA ++  +   V     L     
Sbjct: 26  VNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A   LA     ++K  +IA+TGS GKTTTK+M+   LS   KTY   G++NN 
Sbjct: 79  -VDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNNE 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM H G+I FL+ L +P +A+IT I  AHL      E I
Sbjct: 138 IGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K  I  GL   G +    D      +         + I  FG     D  + K  + 
Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPEN------QKISRFGLP-GEDLFITKLIEH 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILT-ADVDTAIKALSVFHPKE 324
            E+   E     +S+ +   G  Y+    ML   +G+   LT A+++ A+K + +   + 
Sbjct: 249 KERLTFETNFLDESITIPVPG-KYNATNAMLAAYVGLHYGLTEAEINKALKEVELTRNRT 307

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              K    A       L+ + YNANP +M+  +     I  +  GR+IAVL DM E+G  
Sbjct: 308 EWKKSKNGA------DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPT 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   H ++ + +    I  V+L G  +  L D +     V Y   +D L   + + L   
Sbjct: 362 AAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKPVSYFTDLDLLTESLSADLKPA 420

Query: 445 DVVVVKSSN 453
           D V+ K SN
Sbjct: 421 DQVLFKGSN 429


>gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 455

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/444 (29%), Positives = 207/444 (46%), Gaps = 19/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I+    F  IKG   DGHDF+  A++ GA   +             I V 
Sbjct: 24  ITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGHPNK--PEGIAVL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A+  LA     +   T++ ITGS GKTTTK+M+   L+     Y    ++NN 
Sbjct: 81  EVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M    +  + E+GM   G++  L+ L RP +AVIT I  AH+      ++I
Sbjct: 141 IGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFLGSRDKI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI + L++ G    N D    E L A+  A   +   +FG + +        +  
Sbjct: 201 ADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLSQDKSTFGFADSDSIHASDLRST 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
              S+ ++   G   E     IG H   N +  + +V     + D  I A L+ F P   
Sbjct: 257 MHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFVPTAN 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +    +   + I   YN+NP ++KA  +   Q+     GRRIAVL DM E+G  S
Sbjct: 314 RMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440
              H  LA  L    I+ ++L G  +  L  AL      +++H +  + M  L   ++S 
Sbjct: 371 ADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEMSHLIDDLKSD 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           +   D+V++K S+     R+++ L
Sbjct: 431 IHSQDIVLLKGSHGMHLERVLDRL 454


>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 465

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 184/387 (47%), Gaps = 13/387 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++  AI G+ +   P   V G+S DSR I P  AF A+KG  +DGHDFI  A+  GA
Sbjct: 5   TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGAALSGGA 64

Query: 66  GLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
              +  +     +  L     +  VDD L AL KLA   R +  K  +I +TGS GKTTT
Sbjct: 65  AAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIGVTGSSGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ++   LS + K     G++NN IG+P+TL R+       + E+ M   GEI  L  + 
Sbjct: 125 KNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGKGEIASLAAIA 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I   HL     I  IA+AK E+   L   G   LN D+ +   L A     
Sbjct: 185 RPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWCRRLAATCPC- 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + ++   + +   +      +  E ++      GK + V     G H  ++ L  L +
Sbjct: 244 --RVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRHNVEDALAALAV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  + +T  ++L+ + P E   +  R     G   + +++YNANP SM+AA+  L  
Sbjct: 302 GFSLGVEPETMARSLADW-PAEDLRQDLRP--GPGGSLVFNDAYNANPESMEAALQALGA 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +     GRR+AVLG M E+G      H
Sbjct: 359 LP----GRRVAVLGAMLELGPAEVELH 381


>gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
 gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
          Length = 477

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 205/439 (46%), Gaps = 33/439 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + IDSR +     F A+ G   DGH F+      GA   VV+++  +  GS         
Sbjct: 32  VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD + A  +LA A R R    +I I GS GKTTTKEM+   LS+  K     G+YNN
Sbjct: 92  LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGNYNN 151

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++  D +  + E+G++H GE+ FL  + RP   ++T I   HL  F  ++ 
Sbjct: 152 HLGVPLTLFQLRRDTEMAVIEMGINHPGEMAFLASIARPTHGLLTNIGHEHLEFFGSLDG 211

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYS---------FGKSKN 255
           +A A+AE+F+ LE + GT F+N DD     L A   +L  K  Y          + +   
Sbjct: 212 VAKAEAELFDYLEVSGGTAFVNLDD---HRLAAAGASLSRKICYGAVPGEPCAWWAEEVG 268

Query: 256 ADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +D   R  +  CSE         G    V  + IG H   N +    + +      +   
Sbjct: 269 SDRVGRIAFTLCSE--------AGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQIA 320

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L    P  G  KR    L  G   +++++YNANP S++ A+  L+ +     GR++AV
Sbjct: 321 SGLGELMPASGW-KRMEL-LEAGGVVVLNDTYNANPDSVRLALDTLASLDC--SGRKLAV 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +GDM E+G  +   H  +   +    I   V +        ++A  R +  H+ ETMD L
Sbjct: 377 IGDMLELGGNAALEHESIGNYIRQLPIDGCVTIGPLAGSCCQNAQERCLG-HF-ETMDDL 434

Query: 434 FLFIQSSLVDGDVVVVKSS 452
             F+   +  GD V+ K S
Sbjct: 435 DAFLGDYVRPGDAVLFKGS 453


>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 453

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 229/467 (49%), Gaps = 34/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ GA
Sbjct: 4   TLNEVLKAIDGELLIKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63

Query: 66  GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            + +++ ++   +  L+    V  V+D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 64  TVAIID-EVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  L ++ R
Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNEIHRLANIAR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +  +H+      E I   K  I +  +K  T+ +NY++   + +  +S+   
Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYENDMLQKVN-ESNEFK 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I+ I   G  K  D      +   E  S+  V   G+      + +G H   N L+ + I
Sbjct: 242 IEKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +     L+ F     R +     + +  FT+I++ YNA+P SMK+A+SVL  
Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLE----FIKKNNFTIINDCYNASPDSMKSALSVLKT 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--------VLSLYNISHVWLSGFHVLAL 414
            S     R+IAVLGDM E+GE ++S H  + +        VL+       + SGF     
Sbjct: 355 YSG---SRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTTGEFREDYKSGFG---- 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           KD +  +         + L  ++ + + DGDV++VK+S S  F  ++
Sbjct: 408 KDTVTFNCK-------EELKNYLCNLIKDGDVILVKASRSAKFEDIV 447


>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
 gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
          Length = 425

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 185/380 (48%), Gaps = 22/380 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I     FFA+KG +++G+ +   A++KGA   VV+    A    ++     VD
Sbjct: 16  VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYA----INNKFILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +L    R + KA +I +TGS GKTTTKE++   +    KT A +G+ NNHIGV
Sbjct: 72  DVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +HL EI FL+ L  P    IT    AHL  F   E +   
Sbjct: 132 PLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAEPDYGYITNFGKAHLEGFGSTEGVIQG 191

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++ L      +FLN DD   E        LG         S N+++   K +  S 
Sbjct: 192 KSELYKYLTTNQKHVFLNADDPIQE------SKLGTYVKKIGFSSNNSNY--FKIELLSA 243

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             ++ +++  K + +    +G +   N    + +       +    +A+  + P   R +
Sbjct: 244 DPFVTIKV--KDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLIKEAIEGYTPANNRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                L Q  + +I ++YNANP SM AA+   + I       +I  LGDM E+G  +++ 
Sbjct: 302 ----ILEQNGYKIILDAYNANPTSMAAALDNFNGIKA---AHKIVFLGDMFELGTTAETE 354

Query: 389 HIDLAEVLSLYNISHVWLSG 408
           H  +A+     N +  +L G
Sbjct: 355 HQHIADKACKMNFTTTFLVG 374


>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
 gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
          Length = 466

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 215/465 (46%), Gaps = 25/465 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +L+A +G S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 18  FTLSQVLEATKGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 76

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A G +V     V  I  +      VD+ L A   LA   R R    ++AITGS GKTTTK
Sbjct: 77  ATGAIVEKGRSVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 131

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  
Sbjct: 132 EMVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 191

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT +  +H+      E IA AK E+   L +     LN DD +   +KA      
Sbjct: 192 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPY---VKAMDRLAK 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            KTI ++G  +NA       +   +      +   +  ++    IG H   + L  +   
Sbjct: 249 GKTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +T  K LS F    G   R      +    L D +YNANP+SM  AI  L Q+
Sbjct: 308 RVLGIKSNTIRKGLSEFS---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419
                 R+IA+LGDM E+G+ S+  H ++  +L+    S V+  G    F     K A  
Sbjct: 364 EGK---RKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 420

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +   +    M   +  I+     GDV++VK S      R++  L
Sbjct: 421 TTFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 462


>gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
 gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
          Length = 456

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 205/448 (45%), Gaps = 43/448 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89
           DSR I P + F  +KG   DGHDFI  A + GA         VA+     +   P   V+
Sbjct: 32  DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA---------VATFSEKVVEGHPYILVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A   LA A   ++K  + A+TGS GKTTTK+ML   LS+   TY   G+YNN IG+
Sbjct: 82  DVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP   D  + E+G  HLG+I  L+ L  P  A++T I  AHL  F    EIA  
Sbjct: 142 PYTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQC 266
           K +I +G+ + G + +  D      L  K      + +  FG  +     +   RK    
Sbjct: 202 KLQIADGMPEGGLLVVPADPIVNAYLPEK------QKVVRFGPDEEIFITELIERKDSLT 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEG 325
              +++E   +   + V     G + A N  M    V++     + AI+ +         
Sbjct: 256 FRANFLE---EAIDLPVT----GKYNATNA-MIAAYVALQEGVSEAAIRDSFETLQLTRN 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+GE S
Sbjct: 308 R-TEWKKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQS 364

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   LS   +  V   G  +  L     +     HV+Y       +  + +   
Sbjct: 365 VDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQ 424

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++ SL + D +++K SNS    +L+  L
Sbjct: 425 VKESLKEQDQILIKGSNSMNLAKLVEEL 452


>gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
 gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
          Length = 457

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 206/448 (45%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A   GA       ++ A    +     
Sbjct: 26  INQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDNGALATFTEKELPADQAHIL---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  KLA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+   G++ L   D   +     +       +  FG    A+  + +  + 
Sbjct: 200 AQGKMQMQDGMPD-GSLLLVPSDPIVDPFLPSN-----LDVVRFGDG--AELTVSELTEF 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +        L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 252 KDHLTFSTNFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILTALANLQLTKN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   L+   I  V   G  +  L     +     HV+Y       +  D +   
Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKIADEDQFDAMVKH 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+ SL + D +++K SNS    +++  L
Sbjct: 426 IKESLGEHDQILLKGSNSMNLAKVVEEL 453


>gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 452

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 24  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+G
Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGELG 368

Query: 383 E 383
           E
Sbjct: 369 E 369


>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
 gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
          Length = 476

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 202/439 (46%), Gaps = 31/439 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + IDSR       F A+ G   DGH F+      GA   VV+ +     G+         
Sbjct: 34  VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD + A  +LA A R R    +I I GS GKTTTKEML   LS+        G+YNN
Sbjct: 94  LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGNYNN 153

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL +M  D +  + E+G++H GE+ FL+ L +P   ++T I   HL  F  ++ 
Sbjct: 154 HLGVPLTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNIGHEHLEFFGSLDG 213

Query: 206 IASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW- 263
           +A A+A +F  LE   GT F+N DD     L A   +L  KT Y  G    A    R W 
Sbjct: 214 VADAEAALFRYLEAHGGTAFVNLDD---HRLAAAGASLSRKTGY--GAQPGAG---RAWW 265

Query: 264 -KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +Q        V     S   VH  +    A   +    +++ + A    A   L+  H 
Sbjct: 266 AEQIGADRVGRVSFTLCSESGVHQPV----AMQFVGRHNVINAVAASAVGAHFGLAPAHI 321

Query: 323 KEG-------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG       +G +       G   +++++YNANP S++ A+  L+ I     GRRIAVL
Sbjct: 322 AEGLGTLLPAKGWKRMELFEDGGIVVLNDTYNANPDSVRLALDTLAAIECR--GRRIAVL 379

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           GDM E+G+ S   H  +   +    + + + L     L  + A  R +  H+  TMD L 
Sbjct: 380 GDMLELGDNSAIEHESIGRYIRQLPLDACLTLGDAAQLICEQAGGRCLR-HFG-TMDELR 437

Query: 435 LFIQSSLVDGDVVVVKSSN 453
            F+   +  GD ++ K S 
Sbjct: 438 GFLSEYVQPGDALLFKGSR 456


>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes L99]
          Length = 470

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + +  
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
           +E +      +   +E+    IG H   N +  +     + I    + +A+K +      
Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+
Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + + 
Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLAE 443

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468


>gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
 gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
          Length = 454

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 25/449 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+RSI     F A+ G  +D H+F   AV+ GAG ++V   +  ++  + +   
Sbjct: 24  IESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQKRVNVNVPQVVVG-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL ++A       +   +AITGS GKTT KEM+   L    K     G++NN 
Sbjct: 82  ---DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   D D+ + ELG +H+GEI + T LV+P IA++  +A AHL  F  I+ +
Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRK--- 262
             AK EI++GL   G   +N D +      AK    L  K + +F +S NAD        
Sbjct: 199 KQAKGEIYQGLAAGGIAIVNLDSNG----GAKWDEVLADKNVITFSQS-NADAYFYASNI 253

Query: 263 -WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 E S+ + +    + +E+    IG H   N +    I   + A ++     L   
Sbjct: 254 VMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASIIALKMGATLEEIRSGLKHL 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +  +GR +    +       LID+SYNA+  +MKAA+ +L+      +G+R  +LG+M E
Sbjct: 314 NKVKGRVEVEELSDK---IKLIDDSYNASVPAMKAAVDLLAAF----QGQRWLILGNMAE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439
           +GE S + H  + E  +     HV   G     + + L   IH   + E +D +   +  
Sbjct: 367 LGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDGIHFETHQEMIDYIKQHLDQ 425

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++ +   ++VK +N    + +   L E +
Sbjct: 426 AVPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP
           32953]
 gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 193/388 (49%), Gaps = 39/388 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R +     F A+KG  +DGHDF   A+  GAG ++V+  ++  +G    P   V 
Sbjct: 32  VTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLL--VGG---PQLVVK 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL + A   R +  A I+A+TGS GKT+ KEM    L          G++NN IGV
Sbjct: 87  DTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAGNFNNDIGV 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 147 PLTLLRLTAEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF---QLRKWK 264
           K EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF    +R   
Sbjct: 207 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHAAEHIDFYASDVRITP 263

Query: 265 QCSEQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           Q +  +         +E+ L G+     H+      A  + M++G      AD+    + 
Sbjct: 264 QLTSFTLHSPFGTVAIELPLPGQ-----HNIANALAAAALAMSVG------ADLAAVRQG 312

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+      GR   +   L +G   L+D+SYNAN  SM AA  VL+++     G R+ V+G
Sbjct: 313 LAQLQAVPGR--LFPVPLAEGKL-LLDDSYNANVGSMIAAAQVLAEMP----GYRVMVVG 365

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHV 404
           DM E+GE +   H  + E   L  +  V
Sbjct: 366 DMAELGETAADCHRQVGEAAKLAGVDKV 393


>gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM 10]
 gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis FV-1]
 gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis CO92]
 gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10]
 gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CO92]
 gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D106004]
 gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D182038]
 gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 458

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 193/388 (49%), Gaps = 39/388 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R +     F A+KG  +DGHDF   A+  GAG ++V+  ++  +G    P   V 
Sbjct: 32  VTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLL--VGG---PQLVVK 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL + A   R +  A I+A+TGS GKT+ KEM    L          G++NN IGV
Sbjct: 87  DTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAGNFNNDIGV 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 147 PLTLLRLTAEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF---QLRKWK 264
           K EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF    +R   
Sbjct: 207 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHAAEHIDFYASDVRITP 263

Query: 265 QCSEQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           Q +  +         +E+ L G+     H+      A  + M++G      AD+    + 
Sbjct: 264 QLTSFTLHSPFGTVAIELPLPGQ-----HNIANALAAAALAMSVG------ADLAAVRQG 312

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+      GR   +   L +G   L+D+SYNAN  SM AA  VL+++     G R+ V+G
Sbjct: 313 LAQLQAVPGR--LFPVPLAEGQL-LLDDSYNANVGSMIAAAQVLAEMP----GYRVMVVG 365

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHV 404
           DM E+GE +   H  + E   L  +  V
Sbjct: 366 DMAELGETAADCHRQVGEAAKLAGVDKV 393


>gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 486

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP G    I  DSR+I+  + F  +KG   DGH+FI  A   GA         +A+I   
Sbjct: 55  VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 101

Query: 82  SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            I   P   V D L A   LA     +    +IA+TGS GKTTTK+M+   LS+  KTY 
Sbjct: 102 EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 161

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P IAV+T I  AHL 
Sbjct: 162 TQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 221

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E+IA  K +I +G+   G +    D      L A    +       FG  +  + 
Sbjct: 222 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 273

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q+ + K+  E+  +  +      ++     G + A N ++   +  +L    +  + AL 
Sbjct: 274 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 331

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +  + A       ++ + YNANP +M+  +   S I  +  G++IA+L DM
Sbjct: 332 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 388

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429
            E+GE S   H  +   +   +I  +   G  +  L     +   +            + 
Sbjct: 389 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPIGKVYFFKKNQEVDQ 448

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D L   ++ +L + D +++K SNS    +++++L
Sbjct: 449 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 483


>gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 454

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 190/398 (47%), Gaps = 40/398 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           +N I  DSR+I   + F  ++G   DGHDFI  A + GA         VA+    +I   
Sbjct: 19  LNQIEFDSRNITKGDLFLPLQG-ERDGHDFIDLAFENGA---------VATFSERAISGR 68

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V++ L A  KLA     + +  +IA+TGS GKT+TK+M+   L+   KTY   G+Y
Sbjct: 69  PYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGNY 128

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP D +  + E+G  H+G+I+ L+ + RPHIAV+T I  AHL+ F   
Sbjct: 129 NNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARPHIAVLTLIGEAHLAYFGSR 188

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQL 260
           E+IA  K +I +G++  G I +   D   +     S     + +  FG  +     D + 
Sbjct: 189 EKIAEGKMQIVDGMDSNG-ILIAPGDPILDPYLPDS-----QMVIRFGDHQELVVEDIKE 242

Query: 261 RK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           RK    +K       + + L GK           + A N ++   +  +L    +  I+A
Sbjct: 243 RKDSLTFKTNVLPRPVTIPLTGK-----------YNATNAMIAAYVGRLLAVPDEDIIEA 291

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L        R +  + A       L+ + YNANP +M+  +   + I  +  G++IAVL 
Sbjct: 292 LEAVKLTRHRTEWIKAA---NGADLLADVYNANPTAMRLILETFAAIPANLNGKKIAVLA 348

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           DM E+G  S + H  L   L    I  +   G  + AL
Sbjct: 349 DMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQAL 386


>gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
 gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
          Length = 466

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 195/423 (46%), Gaps = 30/423 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +   I  L
Sbjct: 32  IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A  I T    G     D +L
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKAHRISTFGVGGDVYATDIEL 266

Query: 261 ----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 +   + Q    V+L            G H  QN    +     +   ++  ++ 
Sbjct: 267 LPQSTNFTLHTPQGISAVKLPFA---------GEHNVQNATAAVAFALAIGIGLEDIVQG 317

Query: 317 LSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L     ++ +G + R   + +  +  ID++YNANP SM+AA  VL Q     +G ++ V+
Sbjct: 318 L-----EQAQGAKGRLNFIQKSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGLKVMVM 368

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLF 434
           GD+ E+G+ S   H DL   L+   + H+   G F   AL+ A   S  V   +T     
Sbjct: 369 GDIGELGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAEAL 428

Query: 435 LFI 437
            F+
Sbjct: 429 PFL 431


>gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
 gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
          Length = 473

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 218/471 (46%), Gaps = 57/471 (12%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V G +  DSR++     F A  G   DGHD+   AV  GA  V+           L
Sbjct: 23  PELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVGAGAVAVLATR-------PL 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P   VDDV  AL  LA     R   T+IA+TGS GKT+TK+++   LS    T    G
Sbjct: 76  GVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTGKTSTKDLIAQLLSRRGPTVWPPG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PLT  R+  D    + E+G   +G IR+LT L  P I ++  +  AH+  F 
Sbjct: 136 NLNNEIGLPLTALRVTRDTRHLVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFG 195

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---- 257
           G E+IA AK E+ E L ++G   LN DD     +  ++ A     +  FG++ +A+    
Sbjct: 196 GKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPRTRA----RVLLFGEADDAEVRAE 251

Query: 258 -----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                      F LR    C E   + ++L G+     HH      A  +   LG+ +  
Sbjct: 252 NVTLTDTGRPRFLLRTPTGCGE---VTLRLYGE-----HHVSNALAAAAVAHELGMPAEE 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQIS 364
            A      ++LS          R+R  + +     T+++++YNA+P S++AA+  L  + 
Sbjct: 304 IALGLNEARSLS----------RWRMEVTERPDGVTIVNDAYNASPDSVRAALRALVAMG 353

Query: 365 PHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALK 415
                  GR  AVLG M E+G+ S + H  +  +    N+S +   G        + A  
Sbjct: 354 SAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWLRMGAYN 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +       VH S+T   + L ++  L  GDVV+VK+S + G  ++   LLE
Sbjct: 414 EGSWGEESVHVSDTQAAIDL-LRGELRPGDVVLVKASRAAGLEKVAQALLE 463


>gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 440

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 205/440 (46%), Gaps = 27/440 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I  DSR I   + F  +KG   DGHDFI  A   GA ++  +   V     L     
Sbjct: 26  VNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  KLA     ++K  +IA+TGS GKTTTK+M+   LS   KTY   G++NN 
Sbjct: 79  -VDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNNE 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM H G+I FL+ L +P +AVIT I  AHL +    E I
Sbjct: 138 IGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAVITLIGEAHLEHMGSRENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K  I  GL   G +    D      +         + I  FG     D  + K  + 
Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPDN------QKIIRFGLP-GEDLFITKLVEH 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGI-VSILTADVDTAIKALSVFHPKE 324
            E+   E     +S+ +   G  Y+    ML   +G+   +  A++  A+K + +   + 
Sbjct: 249 KEKLTFETNFLDESITIPVPG-KYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNR- 306

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                ++ A N     L+ + YNANP +M+  +     I  +  GR+IAVL DM E+G  
Sbjct: 307 ---TEWKKAKNGA--DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPS 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   H ++ + +    I  V+L G  +  L + +     V Y   +D L   + + L   
Sbjct: 362 AAQLHKEILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKAVSYFTDLDLLTESLSADLKPT 420

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D V+ K SNS     ++  L
Sbjct: 421 DQVLFKGSNSMKLSEVVEKL 440


>gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316]
 gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
 gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
          Length = 455

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP G    I  DSR+I+  + F  +KG   DGH+FI  A   GA         +A+I   
Sbjct: 24  VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70

Query: 82  SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            I   P   V D L A   LA     +    +IA+TGS GKTTTK+M+   LS+  KTY 
Sbjct: 71  EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+P T+  MP D +  I E+G  HLG+I  L+ + +P IAV+T I  AHL 
Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E+IA  K +I +G+   G +    D      L A    +       FG  +  + 
Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q+ + K+  E+  +  +      ++     G + A N ++   +  +L    +  + AL 
Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +  + A       ++ + YNANP +M+  +   S I  +  G++IA+L DM
Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429
            E+GE S   H  +   +   +I  +   G  +  L     +   +            + 
Sbjct: 358 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPIGKVYFFKKNQEVDQ 417

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D L   ++ +L + D +++K SNS    +++++L
Sbjct: 418 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452


>gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
          Length = 457

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 222/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              ++T +  AHL+ F    EIA  K +I +G+  +G++FL   D   E      +    
Sbjct: 177 KTVIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLFLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QVLDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+ L+  H +  R +  ++ A+N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAVNGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 461

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 209/446 (46%), Gaps = 23/446 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGSLSIPVFG 87
           +SIDSR I P + F  + G H DGH FI  A +KGA       + ++    G   + V  
Sbjct: 27  VSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEKGAAGCFAAFSKNVTHPEG---MTVIS 83

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   AL  L+   R + +  ++A+TGSVGKTTTK+M+  ALS   KT    G+ NNH+
Sbjct: 84  VEDPEQALQDLSAFYRRKFQLPVVAVTGSVGKTTTKDMIAAALSPELKTLKTEGNLNNHL 143

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL L R+    +  + E+GMS  GEI  L  L  P +AVIT I  +HL      E IA
Sbjct: 144 GVPLMLTRLDSTYEAAVLEMGMSGYGEIDLLAKLALPTVAVITNIGESHLEMLGSREGIA 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK E+   L   G   +N D+    LL      LG + I +FG  ++A  +        
Sbjct: 204 RAKCELLGHLAADGVAVVNADEP---LLVPHIKGLGCRVI-TFGFDEHATVRCTDIINDE 259

Query: 268 EQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                 ++ +G   +EVV    G H   N++  L +  +L  D     +  S        
Sbjct: 260 AGKRAIIEQEGFAPLEVVPPLPGRHNIYNLMAALAVGRLLGVDDSVLTEGFSRVRLS--- 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R           +I+++YNA+P ++ AA  VL++++   +  R AVLGDM E+G+  +
Sbjct: 317 GMRLETVTTPAGIQVINDAYNASPTAVSAAFDVLAELAK--DAARFAVLGDMLELGDWEE 374

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSS 440
             H      ++ +N+S + + G     + D        P+   V+  E+       I   
Sbjct: 375 EGHRQTGRQVARHNLSGLLVLGERAQLIADGAVAAGYPPQ--RVYRCESHAQAAQVIAKI 432

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466
              GD V++K S       ++ +LLE
Sbjct: 433 ARAGDWVLLKGSRGMRMEDVLAVLLE 458


>gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 463

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 35  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 91  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 150

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 151 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 210

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 211 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 270

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 271 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 326

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+G
Sbjct: 327 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGELG 379

Query: 383 E 383
           E
Sbjct: 380 E 380


>gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
 gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
          Length = 467

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 132/413 (31%), Positives = 198/413 (47%), Gaps = 35/413 (8%)

Query: 5   WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W+   L QA QG+ +    P G +  I  DSR     +AF A+KG  +D HDFI     +
Sbjct: 14  WSIEQLQQATQGYWLNDKKPAGQIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V+  + A I  L      V+D   AL +L    R ++ +  +IA+TGS GKTTT
Sbjct: 74  GCEIAIVSRPVDADICQLV-----VEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + +V
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPVMLLELRPEHQYAVMELGASHQGEIDYTSKMV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI+  + +T  I     D F E+++A   A+
Sbjct: 189 QPHVAGIINIGTAHLGEFGGRDGICRAKSEIYAHISETSII--PAADDFAEVIRA---AV 243

Query: 243 GIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +   SFG       +D  L      ++ S   +     S  V     G H  +N    
Sbjct: 244 RTEKSLSFGAGGEVYASDVVLE-----AQSSSFTLNTPQGSKTVQLPFAGEHNVENATAA 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAA 356
                 +   +D  +  L      +GR       LN      +  ID++YNANP SM+AA
Sbjct: 299 AAFALAIGIGLDDIVAGLEQAVGAKGR-------LNFIPHKDYLFIDDTYNANPGSMRAA 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSG 408
             VL+Q     +G R+ V GD+ E+G  +   H  L  +++S+  I+ V   G
Sbjct: 352 AEVLAQ----QQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVAVG 400


>gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 466

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 54/439 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           DGH+FI  A+ KGA   +V        ++     S +IPV    + L AL KLA   R R
Sbjct: 54  DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPV---KNTLTALGKLASFHRSR 110

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFG 163
               +IA+TGS GKTTTKE+L   L +++++   +   +YNN IG+P TL ++       
Sbjct: 111 FDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLPFTLFKISDQTRVV 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + ELGM+H GEI  L+ + +P  A+ITTI  AH+      + IA AK EI EGL+K G +
Sbjct: 171 VCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAKGEIVEGLKKGGKL 230

Query: 224 FLNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           F      + ++LK K+   G K        I+S  + K++ F                 L
Sbjct: 231 FYPNTGEYSKILKNKTRKHGNKLVLTKSEKIFSILQKKSSGF----------------LL 274

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K+ ++  +  G  + +N+ + +  +  +    +   + +  F     +    R  L  
Sbjct: 275 EYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSF-----KSSNKRLDLQN 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEV 395
           G +++I+++YNAN  SM +++ V  Q++   +G+   AVLGDM E+GE S+ FH  L + 
Sbjct: 330 GKYSVINDTYNANYESMISSLEVADQLA---DGKEFYAVLGDMKELGEYSKEFHKKLGKK 386

Query: 396 LSLY-NISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQS---SLVDGD 445
            S + N+  ++  G     +++        PR    H+  T +GL   I     ++ +G 
Sbjct: 387 CSEFQNLKGLYTFGTDAFWIQEEFVKRTSSPR-FSEHFPGTQEGLSELIHKFLQTIPEGS 445

Query: 446 VVVVKSSNSCGFYRLINLL 464
           +V+ K+S      R +  L
Sbjct: 446 IVLAKASRGIQLERFVEAL 464


>gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 220/439 (50%), Gaps = 30/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+      FFA+KG +++G+++   A+  G    +V+    A+  ++ +    V+
Sbjct: 16  VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVDESKYATRPNIIL----VE 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L KLA   R + K  +I ITG+ GKTTTKE++T  LS      A  G+ NNHIGV
Sbjct: 72  DCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELITSVLSQEYNVLATQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  I E+G SH+GEI+ L+ +  P+  VIT I  AH+  F   E +  A
Sbjct: 132 PLTLLRIKKEHEIAIIEMGASHVGEIKVLSEMAMPNYGVITNIGHAHIEGFGSYENVIKA 191

Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E++E +  T  G IF++YD+S   LL+  S   GI +IY +G  ++        K  S
Sbjct: 192 KGELYEYIRSTRDGKIFIDYDNS---LLREMSE--GITSIY-YGLEEDL---FISGKVLS 242

Query: 268 EQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + ++E + +   +  +V  + IG +   N L  + I   L        KA+  + P   
Sbjct: 243 IRPFLEFEWKFGTRRNKVKTNLIGEYNLSNALAAITIGKYLGVKASLICKAIEEYQPTNN 302

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N     LI ++YNANP SM AA+     +  +    ++ +LGDM E+G  +
Sbjct: 303 RSQLKETDRNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDT 355

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +A+ +S +N   V   G +   +    PR       + +D L  +++ + +   
Sbjct: 356 DLEHQKVADYVSHHNFDRVIFVGDNFSRIITDYPR------FKDLDSLKYYLKENPIADS 409

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      R I++L
Sbjct: 410 YILLKGSRGVQLERCIDVL 428


>gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 458

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 181/377 (48%), Gaps = 17/377 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R + P   F A++G  +DGHDF   A + GA  ++V+  +      L +P   V 
Sbjct: 27  VTTDTRKLTPGCLFIALQGESFDGHDFAARACEAGAAALLVSRRL-----PLGVPQLLVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +  A ++A+TGS GKT+ KEM    L+         G+ NN IGV
Sbjct: 82  DTRLALGQLAAWVRSQVPARVVALTGSSGKTSVKEMSAAILAQCGNVLYTAGNLNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    DF + ELG +H+GEI +   L RPH A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLAGVARA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCS 267
           K EIF GL   GT  +N D + ++  +    AL  + ++ F     +  DF   + +   
Sbjct: 202 KGEIFSGLPAQGTAIINADSNDWDNWQ---QALPTQRVWRFSPQAGSGVDFYASEVRSEV 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +   +      + V     G H   N L    +   + A +    + L+  H   GR 
Sbjct: 259 DGTHFVLHTPTGEIAVTLPLPGRHNIANALAAAALTMSVGASLTQVRQGLAGLHAVPGRL 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R    Q    L+D+SYNAN  SM AA  VL  +     G R+ V+GDM E+G  +++
Sbjct: 319 YPIRLGEQQ---LLLDDSYNANVGSMSAAAEVLGAMP----GYRVMVVGDMAELGVEAEA 371

Query: 388 FHIDLAEVLSLYNISHV 404
            H  + E      I  V
Sbjct: 372 CHRRVGEAARAAGIDKV 388


>gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK678]
          Length = 456

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++   A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYTALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 456

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 205/448 (45%), Gaps = 43/448 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89
           DSR I P + F  +KG   DGHDFI  A + GA         VA+     +   P   V+
Sbjct: 32  DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA---------VATFSEKVVEGHPYILVE 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A   LA A   ++K  + A+TGS GKTTTK+ML   LS+   TY   G+YNN IG+
Sbjct: 82  DVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGL 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+  MP   D  + E+G  HLG+I  L+ L  P  A++T I  AHL  F    EIA  
Sbjct: 142 PYTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKG 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQC 266
           K +I +G+ + G + +  D      L         +T+  FG  +     +   RK    
Sbjct: 202 KLQIADGMPEGGLLVVPADPIVDAYLPEN------QTVVRFGPDEEIFITELIERKDSLT 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEG 325
              +++E   +   + V     G + A N  M    V++     + AI+ +         
Sbjct: 256 FRANFLE---EAIDLPVT----GKYNATNA-MIAAYVALKEGVSEAAIRDSFETLQLTRN 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+GE S
Sbjct: 308 R-TEWKKASNGA--DILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQS 364

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   LS   +  V   G  +  L     +     HV+Y       +  + +   
Sbjct: 365 VDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQ 424

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++ SL + D +++K SNS    +L+  L
Sbjct: 425 VKESLKEQDQILIKGSNSMNLGKLVEEL 452


>gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2]
          Length = 466

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 206/449 (45%), Gaps = 69/449 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A I  L
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAEIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253
            G + I  AK+EI+  +   G   +   D F   ++  AKSH      I SFG       
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261

Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  ++ +FQL   +     S++ +   G+           H  QN    +     L
Sbjct: 262 TEIELLPQSVNFQLHTPQGS---SFVRLPFAGE-----------HNVQNATAAVAFALAL 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++  +K L     ++ +G + R   + +     ID++YNANP SM+AA  VL Q + 
Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414
              G ++ V+GD+ E+G+ S   H DL   L+   + H+             +G H   L
Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418

Query: 415 K------DALP---RSIHVHYSETMDGLF 434
           K      +ALP     I  H  ++M  LF
Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447


>gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
 gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
          Length = 457

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A   GA       ++ A    +     
Sbjct: 26  LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  +LA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L++L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+     + +  D      L +         +  FG    A+  + +  + 
Sbjct: 200 AQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEY 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +      + L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   L+   I  V   G  +  L     +     HV+Y       +  D +   
Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQ 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+ SL + D +++K SNS    +++  L
Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453


>gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
 gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
          Length = 453

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 185/389 (47%), Gaps = 27/389 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  D+R +     F A+ G  +D HDF+  A+  GA  ++V+  +  ++  +     
Sbjct: 24  VGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVSKHLPVAVPQVV---- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +L    R ++KA ++A+TGS GKT+ KEM    L    +T    G+ NN 
Sbjct: 80  -VADTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            GVP+TL R+  D D+ + ELG +H GEI + T L RP  A++  +A AHL  F  +  +
Sbjct: 139 FGVPMTLLRLTKDHDYAVIELGANHQGEIAYTTDLTRPETALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-------DFQ 259
           A AK EIF GL   GT  +N D +  +L   +   +G KT++ F     A       D Q
Sbjct: 199 AKAKGEIFAGLPAHGTAIINADSN--DLANWQPQLVG-KTLWRFSPQPQAEVEFGASDIQ 255

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           LR     ++ +   +      + +     G H   N L    +   + A +      L+ 
Sbjct: 256 LR-----ADATSFTLHTPRGDIAITLPLPGRHNIANALAAAALALSVDAPLSAIQAGLTK 310

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  GR    R A +Q    LID+SYNAN  SM AA  VL  +     G R+ V+GDM 
Sbjct: 311 LQPVPGRLFPVRLAEHQ---LLIDDSYNANVGSMTAAAQVLGDMP----GYRVMVVGDMA 363

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           E+G+ +++ H  + E      I  V  +G
Sbjct: 364 ELGDEAEACHRQVGEAAKAAGIDCVLSTG 392


>gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 457

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 210/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+ +P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     +GR    +   N     L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRSQV---KGRLLPIQVTPN---LLLLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 455

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 212/469 (45%), Gaps = 23/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+    +L + +QG   G     F N +  DSR IA    F A+ G ++DG+D++   
Sbjct: 2   MRPM-RLSELQEPLQGRITG-EDVCFTN-VFTDSRQIAKNGLFVALVGENFDGNDYVEAV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA        +V+   S ++P   V+D   AL +L    R      ++AITGS GKT
Sbjct: 59  AENGA-----VAALVSRSSSSALPQLCVEDTQTALGRLGAFNRDLYTGPLVAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K ++   LS    T A  G++NN +GVPLTL R+  + +F + E+G +  G+I +L  
Sbjct: 114 TAKNLINGVLSQRGATLATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWLCE 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +AV+    PAH+ +F  +E IA  K EIF+ L       +N D  + E  KA++ 
Sbjct: 174 LGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKARA- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G  TI  F  + +A     + +    +  S++ V  +G  ++V     G H   N L 
Sbjct: 233 --GTATILDFSLNGDAAVVATQIESHGIAGSSFVAVTPKG-CVDVSLRLPGEHNIANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +       +D     L    P  G   R    +      +ID+ YNANP S  AAI 
Sbjct: 290 AIAVGLACELALDEIAAGLESVAPVAG---RLSVQVAASGALVIDDCYNANPGSALAAID 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+      EG+   V+G M E+GE S   H  L        ++  W  G  +    DA 
Sbjct: 347 TLAA----SEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVGAELKVAVDAF 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  + E  D   +   +S   GD V++K S      R++  L+ +
Sbjct: 403 GE--RGRWFEHCDQAVVAASASFSQGDTVLIKGSRGARMERVLQALVPD 449


>gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 466

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 192/419 (45%), Gaps = 22/419 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     + F A+KG  +D HDF+      G  + +V   +   I  L
Sbjct: 32  IPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVDIAQL 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V D   AL +L    R + ++  +IA+TGS GKTT KEML   LS +  T    
Sbjct: 92  V-----VADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  F + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A  I T    G     D +L
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEIHKAAQAHRISTFGVGGDIYATDIEL 266

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  + +   +     +  V     G H  QN    +     L   ++  ++ L   
Sbjct: 267 -----LPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFALALGIGLEDIVQGL--- 318

Query: 321 HPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             ++ +G + R   + +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ 
Sbjct: 319 --EQAQGAKGRLNFIQKSPYLFIDDTYNANPNSMRAAAQVLLQ----QQGIKVMVMGDIG 372

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFI 437
           E+G+ S   H DL   L+   + H+   G F   AL+ A   S  V   +T      F+
Sbjct: 373 ELGDSSWQEHHDLGHDLAQLPLDHIIAVGQFASAALEGADSHSNKVKAFQTQAEALPFL 431


>gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
 gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
          Length = 453

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 186/380 (48%), Gaps = 17/380 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R +     F A++G  +D HD+ + AV  GA  ++V+  +      + +P  
Sbjct: 24  ISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVNNGAAALLVSKHL-----PIDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM    L          G++NN 
Sbjct: 79  VVDDTRLALGVMAGWVRQQSRARVVALTGSSGKTSVKEMAASILRQCGNVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP  A++  +A AHL  F  +E +
Sbjct: 139 IGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWK 264
           A AK EIF GL   G   +N D +     +     L  KT++ F        DF     +
Sbjct: 199 AQAKGEIFGGLPAQGVAIINADSNDEARWQ---DVLTGKTLWRFSPQGHDGVDFYASDIR 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                +   +      + V     G+H   N L    +   + A ++     L       
Sbjct: 256 VSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAATALALTVGASLEAVKVGLEQLQAVP 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR   +  AL  G   L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+ 
Sbjct: 316 GR--LFPIALAPGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELGQD 368

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           +Q+ H  + E     NI  V
Sbjct: 369 AQACHRQVGEAARKANIDKV 388


>gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
 gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
          Length = 455

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP G    I  DSR+I+  + F  +KG   DGH+FI  A   GA         +A+I   
Sbjct: 24  VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70

Query: 82  SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            I   P   V D L A   LA     +    +IA+TGS GKTTTK+M+   LS+  KTY 
Sbjct: 71  EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P IAV+T I  AHL 
Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E+IA  K +I +G+   G +    D      L A    +       FG  +  + 
Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q+ + K+  E+  +  +      ++     G + A N ++   +  +L    +  + AL 
Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +  + A       ++ + YNANP +M+  +   S I  +  G++IA+L DM
Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429
            E+GE S   H  +   +   +I  +   G  +  L     +   +            + 
Sbjct: 358 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEELAQLASQMFPIGKVYFFKKNQEVDQ 417

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D L   ++ +L + D +++K SNS    +++++L
Sbjct: 418 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452


>gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae
           TIGR4]
 gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 457

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 215/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
 gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
          Length = 452

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 221/445 (49%), Gaps = 19/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SI++R++ P + F   +G + +GH ++  A++ GA   +   D   +   L  P+ 
Sbjct: 23  ITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELGASASLWQRDEPGAPEDL--PLL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL ++A A R    A +I ITGS GKT+TK+++   L    K     G++NN 
Sbjct: 81  FVEDCEVALQEMARAYRDELSAMVIGITGSNGKTSTKDLVASVLKPYFKVQKTPGNFNNQ 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLT+  +  D    + E+GMS  G+I FL+ L RP  A+IT I  AHL +    E I
Sbjct: 141 LGLPLTILSLEEDTKVAVLEMGMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G +F + D+   +    ++   G+    SFG   N +  +   K  
Sbjct: 201 AEAKFEITAGLQQHGKLFYDGDEPLLQPF-MEAFPQGV----SFGFDDNNELTVTDIKAT 255

Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  S+M   +   +  +    +G H  +N L  + +        +   K+L      + 
Sbjct: 256 ESGSSFMVSGIIDAAFTIPV--LGEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDM 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  + A N   F  I+++YNA P+SM AA++ + + +   + ++  VLGDM E+G+  
Sbjct: 314 RMQMIQ-ADNGAIF--INDAYNAAPSSMNAALNFIRETT--MKDKKWVVLGDMLELGDDE 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVD 443
           QS+H  L++ +S  N+  V L G  +  L D L  +    + +SE   G  + +     +
Sbjct: 369 QSYHEALSKCIS-DNLVGVCLYGPRMKWLYDKLQPTYGGRLLWSEADYGPIIDLLKKYTN 427

Query: 444 GD-VVVVKSSNSCGFYRLINLLLEE 467
            D V++VK S       +I   + E
Sbjct: 428 KDSVILVKGSRGMALENVIEPFVNE 452


>gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
 gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
          Length = 453

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 193/394 (48%), Gaps = 24/394 (6%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I + P    N +  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV    V    SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  C---VVTLSEV----SLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 116 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VIT    AHL  F   EEIA  K +I +G+E    + +       +LL   SH   I
Sbjct: 176 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPAYPIADKLL--PSHVDLI 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG+   AD Q+    +  +     V       ++     G + A N ++   +  
Sbjct: 234 R----FGEQ--ADLQVTSLVESKDSLTFTVNFM--DGDIFLPVTGKYNATNAMVASYVGK 285

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +    AL+  +    R   ++ A N     ++ + YNANP +M+  +   S I 
Sbjct: 286 TLGVSNEAIKSALASLNLTRNR-TEWKKAANGA--DILSDVYNANPTAMRLILETFSSIP 342

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +  G++IAVL DM E+G  SQS  +    +LSL
Sbjct: 343 ANEGGKKIAVLADMKELG--SQSVELHNQMILSL 374


>gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
 gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
          Length = 473

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 203/449 (45%), Gaps = 28/449 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR +     F A  G   DGHD+   AV+            V +   +  P   VD
Sbjct: 31  VVIDSREVRQGSLFAAFAGERVDGHDYARAAVEA-------GAVAVLAARPVGCPAIVVD 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV+ AL  LA A   R    ++A+TGS GKT+TK+++   L     T    GS NN IG+
Sbjct: 84  DVVAALGALACAVVERLGTAVVALTGSAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT      +    + E+G   +G I +L  L  P I ++  +  AHL  F   E IA A
Sbjct: 144 PLTALTATAETRHLVLEMGARGVGHIHYLAQLTPPTIGLVLNVGSAHLGEFGSREAIAQA 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K E+ E L + G   LN DD     + A++ A     +  FG++ +AD +    +   + 
Sbjct: 204 KGELVEALPEDGVAVLNADDPLVRAMAARTQA----RVVLFGEAPDADVRGENVRLTDDG 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    +       +V     G H   N L    +   L   V    +ALSV     G   
Sbjct: 260 RPAFALHTPTGCSDVTLRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSVA----GTLS 315

Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCEMGE 383
           R+R  + +     T+++++YNANP SMKAA+  L+ +        GR  AVLG M E+G+
Sbjct: 316 RWRMEVTERPDGVTVVNDAYNANPESMKAALRALAAMGKAARAEGGRTWAVLGQMAELGD 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            S + H  +  +    N+S +   G        + A  +       VH S+    + L +
Sbjct: 376 ASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 434

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +S L  GDVV+VK+S S G  ++   LLE
Sbjct: 435 RSELRPGDVVLVKASRSVGLEKVALALLE 463


>gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
 gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
          Length = 462

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 213/438 (48%), Gaps = 31/438 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR + P   F  ++G   DGH+FI  A   GA    V  D +     L  P   
Sbjct: 27  TGVAFDSRRLKPGMLFVPLRG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 83

Query: 88  VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V D L A+ KLA    L +    ++AITGS GKTTTK+M    L++         +YNN 
Sbjct: 84  VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F    +I
Sbjct: 144 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----- 260
           A AK EI +GL++ GT   N D+    LL +++  +  ++  +FG   +N  F       
Sbjct: 204 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 259

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R   + + + W E+      M       G +   N L  L +        +   KAL+ F
Sbjct: 260 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALAHF 312

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +    R +  +      ++ + YNANP +MKA I   S+      GR IAVLGDM E
Sbjct: 313 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEF--QTAGRHIAVLGDMLE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435
           +GE S++ H  LA+ L  + I  V+L G  + AL +AL    P+  +H +  +    +  
Sbjct: 368 LGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 427

Query: 436 FIQSSLVDGDVVVVKSSN 453
            +Q+ +   D+V++K+S+
Sbjct: 428 DLQNDVGHDDMVLLKASH 445


>gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
 gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
          Length = 457

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 221/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELGITDLVERKDSLTFKVNFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 191/382 (50%), Gaps = 13/382 (3%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ +I+G  +    +  VNG+ IDSR + P   FFA KG   DGHDF+  A + GA  V+
Sbjct: 8   VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+     +       +  V+D L AL  LA A R      ++A+TGSVGKT+TK++L + 
Sbjct: 68  VSRGDCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDILALC 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L S  KT    G+YNN IG+PLTL ++       + E+ M   GE+  L  + +P  A+I
Sbjct: 128 LQSRFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLATIAQPSSALI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           + +   HL     +E IA AKAE+   L       +N D     LL+        K  Y 
Sbjct: 188 SNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSP---LLEEAVRPYAAKK-YR 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           FG SK+ DF++   +   +   +E++L   G+S ++         A N +    +  +L 
Sbjct: 244 FGYSKSCDFRIE--ETIIKNQGIEIRLICLGQSEKLFLPLPSRRWAMNAVAAAAMAFLLG 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++    +L  F+P  G  +     L  G   +I+++YNANP SM  A+    ++    
Sbjct: 302 VPLEEIKSSLLNFNP--GSKRLEIIPLPDG-GKIINDTYNANPLSMINALETSRELQE-- 356

Query: 368 EGRRIAVLGDMCEMGELSQSFH 389
           +G+ +AVLGDM E+G+  Q  H
Sbjct: 357 KGKLVAVLGDMLELGDYEQEGH 378


>gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
 gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
          Length = 457

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A   GA       ++ A      + + 
Sbjct: 26  INQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGALATFTEKELPAD----QVHIL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  KLA     +++  +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VDDALEAFQKLAAYYLEKTEVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+     + +  D      L +         +  FG    A+  +    + 
Sbjct: 200 AQGKMQMQDGMPDGSLLLVPSDPIVNPFLPSNLE------VVRFGDG--AELTVSDLTEF 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +        L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 252 KDHLTFSTNFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   L+   I  V   G  +  L     +     HV+Y       +  D +   
Sbjct: 366 VQLHTQMILSLTPDAIDMVIFYGEDIAELSQLASQMFPLGHVYYFKKTADEDQFDAMVKQ 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+ SL + D +++K SNS    +++  L
Sbjct: 426 IKESLGEHDQILLKGSNSMNLAKVVEEL 453


>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 440

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 215/443 (48%), Gaps = 37/443 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+ +DSR++   + F  +KG   DGHD+I   + KGA  V+V+      I +L +   
Sbjct: 23  VQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDVIGKGAVAVLVD----HKIDNLDVCQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD + AL   A A R    AT I ITGS GKT+TK++L   LS +  + A   + N  
Sbjct: 79  IVDDTMAALQLFAKAYRDTLNATFIGITGSNGKTSTKDILFSILSRVGNSIATYKNQNTE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG  L L RM  D +FGIFE+G+ ++G++  +   +RP   ++ ++APAH+ NF  IE I
Sbjct: 139 IGTYLNLFRMNDDTEFGIFEMGLDYVGDVAVMAECIRPDAGLVMSLAPAHMMNFDSIEHI 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           AS K  IF+ +      F   D   FE  ++ SH       ++FG +++ ++ +      
Sbjct: 199 ASEKMRIFDFVTHKDLSFYQGD---FEQYRSISHGE-----HTFGFNEDNEWVVSDVS-- 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK------ALSVF 320
           S    +  +L G +     + +G H A N    + ++S L  D D  I+      AL+  
Sbjct: 249 SNNHGISFKLDGVAYS--SNLLGNHQASNCAGVIALLSKLGID-DAVIREGLNHVALTSL 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             +          + +G   ++ ++Y +NP S K A+ +L+     G+  R+A+L DM E
Sbjct: 306 RTE---------LVEKGNALVLLDAYKSNPISAKYALDLLAHYEYDGD--RVAILSDMVE 354

Query: 381 MGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           +G  S   H+++ + +   NI  +H     F   AL D+   +      +T +     + 
Sbjct: 355 LGPESHKAHLEVLDCIQDLNIKMAHTLGPEFKK-ALSDSRLDASRFTNDDTFEAFVERVT 413

Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461
               +  ++++K S S    RL+
Sbjct: 414 PCFDEHAMILIKGSRSYQLERLM 436


>gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus ND03]
          Length = 457

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A   GA       ++ A    +     
Sbjct: 26  LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  +LA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L++L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+     + +  D      L +         +  FG    A+  + +  + 
Sbjct: 200 AQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEY 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +      + L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   L+   I  V   G  +  L     +     HV+Y       +  D +   
Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQ 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+ SL + D +++K SNS    +++  L
Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453


>gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
 gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           35/02]
 gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI18]
 gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA6140]
 gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID24-1]
 gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI2]
 gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
          Length = 452

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 24  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAA+ VL+++       RI V+GDM E+G
Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 368

Query: 383 E 383
           E
Sbjct: 369 E 369


>gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMD-9]
 gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus LMD-9]
          Length = 457

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 30/448 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGHDFI  A   GA       ++ A    +     
Sbjct: 26  LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A  +LA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L++L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++ +G+     + +  D      L +         +  FG    A+  + +  + 
Sbjct: 200 AQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEY 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +      + L G   +V     G + A N ++   +   L    +  + AL+     + 
Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE S
Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436
              H  +   L+   I  V   G  +  L     +     HV+Y       +  D +   
Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQ 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+ SL + D +++K SNS    +++  L
Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453


>gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA19]
 gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 452

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 24  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAA+ VL+++       RI V+GDM E+G
Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 368

Query: 383 E 383
           E
Sbjct: 369 E 369


>gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
 gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
          Length = 455

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP G    I  DSR+I+  + F  +KG   DGH+FI  A   GA         +A+I   
Sbjct: 24  VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70

Query: 82  SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            I   P   V D L A   LA     +    +IA+TGS GKTTTK+M+   LS+  KTY 
Sbjct: 71  EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P IAV+T I  AHL 
Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E+IA  K +I +G+   G +    D      L A    +       FG  +  + 
Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q+ + K+  E+  +  +      ++     G + A N ++   +  +L    +  + AL 
Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +  + A       ++ + YNANP +M+  +   S I  +  G++IA+L DM
Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429
            E+GE S   H  +   +   +I  +   G  +  L     +   +            + 
Sbjct: 358 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPIGKVYFFKKNQEVDQ 417

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D L   ++ +L + D +++K SNS    +++++L
Sbjct: 418 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452


>gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 466

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 54/439 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           DGH+FI  A+ KGA   +V        ++     S +IPV    + L AL KLA   R R
Sbjct: 54  DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPV---KNTLTALGKLASFHRSR 110

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFG 163
               +IA+TGS GKTTTKE+L   L +++++   +   +YNN IG+P TL ++       
Sbjct: 111 FDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLPFTLFKISDQTRVV 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + ELGM+H GEI  L+ + +P  A+ITTI  AH+      + IA AK EI EGL+K G +
Sbjct: 171 VCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAKGEIVEGLKKGGKL 230

Query: 224 FLNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           F      + ++LK K+   G K        I+S  + K++ F                 L
Sbjct: 231 FYPNTGEYSKILKNKTRKHGNKLVLTKSDKIFSILQKKSSGF----------------LL 274

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K+ ++  +  G  + +N+ + +  +  +    +   + +  F     +    R  L  
Sbjct: 275 EYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSF-----KSSNKRLDLQN 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEV 395
           G +++I+++YNAN  SM +++ V  Q++   +G+   AVLGDM E+GE S+ FH  L + 
Sbjct: 330 GKYSVINDTYNANYESMISSLEVADQLA---DGKEFYAVLGDMKELGEYSKEFHKKLGKK 386

Query: 396 LSLY-NISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQS---SLVDGD 445
            S + N+  ++  G     +++        PR    H+  T +GL   I     ++ +G 
Sbjct: 387 CSEFQNLKGLYTFGTDSFWIQEEFVKRTSSPR-FSEHFPGTQEGLSELIHKFLQTIPEGS 445

Query: 446 VVVVKSSNSCGFYRLINLL 464
           +V+ K+S      R +  L
Sbjct: 446 IVLAKASRGIQLERFVEAL 464


>gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 433

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 31/388 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI I+S+ +     FFA+KG ++DG+ F   A+  GA + +V+ ++  S    +I  F V
Sbjct: 15  GIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVD-NIKYSFSHKNI--FFV 71

Query: 89  DDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----Y 143
            + L +L +LA+  RL+ ++  IIAITGS GKTTTKE+ T  LS   K Y  + S    +
Sbjct: 72  KNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILS---KKYEVVHSTEKNF 128

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLTL  MP +    + E+G +   EI+ +  ++ P+   IT    AHL  F  I
Sbjct: 129 NNHIGIPLTLLSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYITNFGKAHLEGFKNI 188

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--- 260
           + +   K E++  L+K         D   +L+    H+LGI   Y F +  N+D  +   
Sbjct: 189 KGVIRGKLELYNFLKKNKKKVFVNGDDPIQLI----HSLGIDR-YIFSERINSDVDVPIK 243

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             WK+   +S + +    K M++V   +G +   N+   + I +     +    KA+  +
Sbjct: 244 YFWKKTDLKSVLCI----KDMQIVSSLVGSYNLYNIASAITIGNYFKVPLKKIKKAVEDY 299

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +     L +    +I + YNANP+SM   ++  ++I    +G +IA+LGDM E
Sbjct: 300 IPNNYRSQ----ILEKENVKIIVDCYNANPSSMIETLTFFNKI----QGNKIAILGDMLE 351

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G  S+  H  +   L   NI+ ++L G
Sbjct: 352 LGSFSKKEHAKIISFLEKSNINAIFLIG 379


>gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
 gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
          Length = 456

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V ++   VA+      P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AA-VTLSEKRVANH-----PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADPIVEDYLPTD------ 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +   KA         R   ++ A N     ++ + YNANP +MK  +   S
Sbjct: 284 VALQEGVSEEQIHKAFQNLELTRNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
 gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
          Length = 463

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 35  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 91  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 150

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 151 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 210

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 211 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 270

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 271 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 326

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAA+ VL+++       RI V+GDM E+G
Sbjct: 327 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 379

Query: 383 E 383
           E
Sbjct: 380 E 380


>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
          Length = 466

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+L    G   G   P      +  DSR++ P + F A++G  +DGHDF+  AV++G
Sbjct: 3   SLRDVLDGTAGMLRGSAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V       + +L IP+  VDD L AL +LA   R      + A+TGSVGKT+TKE
Sbjct: 63  AAGALVEARWAEELANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTSTKE 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVR 183
            +   L+   +      S+N  +G+ L L  +  + D  + E G ++ LGE+R L  L  
Sbjct: 123 AIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGEVRELCALAE 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T ++ AHL+    IE IA + AE+ E L   G   LN DD    L+  ++ A  
Sbjct: 183 PRIGVVTNVSYAHLARMGTIERIAQSIAELPESLPADGVAVLNGDDFRVRLMAERTPA-- 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHMAQ 294
              +  +G S +   +  + +           L G S ++V  G         +G H   
Sbjct: 241 --RVLLYGLSPDCHVRAEEIESRG--------LDGISFDLVAFGERNRVRLPLLGQHSVH 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           + L  + +   L   ++   + L  FH    + +        G  TL+D++YNA+PAS  
Sbjct: 291 HALAAIAVGYELGLTLE---EMLPGFHDPRVQVRLLTVPGING-ATLLDDTYNASPASCM 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AA+S+L++I      RRIAV GDM E+G   +  H
Sbjct: 347 AALSLLAEIPAQ---RRIAVFGDMYELGWYEEEGH 378


>gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
 gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
          Length = 487

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 216/489 (44%), Gaps = 37/489 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHAV 61
           T  D+L A  G  +       +NG   +SR I         F  I G   D H+FI   V
Sbjct: 4   TVQDILNATNGRLLNGSADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVV 63

Query: 62  QKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + GA    +    ++ + IG  +     V+D   AL    +  R +     I ITGSVGK
Sbjct: 64  ENGAKAFFIKKGHELPSGIGETA--AIEVEDTEAALLDTGLWYREKFNIPFIGITGSVGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+  ALSSI   +   G+ N+ IG+PLTL  +    +  I E+G+S   E+  L 
Sbjct: 122 TTTKEMVAAALSSIN-IHKTKGNANSTIGLPLTLFGLEPCNEAAIIEMGISEFHEMEKLV 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP+ A+ T +  AH+ N    E I   K  I +       +F+N DD     + A++
Sbjct: 181 EAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFTADSVLFINADDELLMKVAAEN 240

Query: 240 HAL---GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYH 291
                  +K I +FG ++ ADF           +      + ++ E V   I     G H
Sbjct: 241 SEFRPKNVKHIVTFGINEKADFYASSITISDSGTDFVANYKSENGEAVSEQIHLKTLGLH 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L  + +   L      + K L+ + P  GRG      +     T+ID++YNA+P 
Sbjct: 301 NVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGN----IIKSNGLTIIDDTYNASPD 356

Query: 352 SMKAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406
           SMKA++ ++ ++    E   RR  V  D+ E+GE +++ H  + E +  YN  +      
Sbjct: 357 SMKASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHYKVGEYIKFYNKENTENKID 416

Query: 407 --------SGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                   S   +L +K  D     +  H+S  ++    +++S L  GD +VVK S    
Sbjct: 417 CLITVGKDSEQIILGVKSEDLETNPVTRHFSTNVEASD-YLKSLLKKGDAIVVKGSRGMQ 475

Query: 457 FYRLINLLL 465
              +IN +L
Sbjct: 476 TEEIINSIL 484


>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
 gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
          Length = 471

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 208/446 (46%), Gaps = 29/446 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P   F  ++G  +DGH F+ +AV++GA    V  D   ++    +  + V+
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVARDCAHAVPD-GLLHWRVE 90

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R +  A ++A+TGS GKTTT+E++  AL+ +    A   + NN IGV
Sbjct: 91  DTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTTRELIRSALAPLGDVQASDSNNNNDIGV 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL     +    + E+GM   GEI  L+    P IAVIT I  AH+        IASA
Sbjct: 151 PLTLLGAHREHAAVVVEMGMRGAGEIERLSRCAEPQIAVITNIGTAHIGRLGSRAAIASA 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   L   G + +   D+  E   ++     I  +   G       ++      +  
Sbjct: 211 KCEITAALSPLGIVVIPAGDALLEDALSRCWTGRILRVALDGDEPENGPEV---SGLTSG 267

Query: 270 SWMEVQLQG----KSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 L G    +   +  +G+       G H A+N ++ L +   L   + T I+AL 
Sbjct: 268 DLPTPDLVGHFLPEDQSLAFNGLRFHCPLEGRHNARNFMLALAVAQELKVSLQT-IQALD 326

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V  P  GR +R    L+ G   L+DE+YNA+P ++ AA+ +L+    H  GRR AVLG M
Sbjct: 327 VQVPG-GRNRR----LSLGGIALLDETYNASPEAVFAALQLLA----HQPGRRYAVLGTM 377

Query: 379 CEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            E+G  S   H  +A+    L L  +  V   G    A++ A          ET +   L
Sbjct: 378 LELGSRSVDLHRRVAQKAVDLQLDGLV-VVAGGEEGEAMEVAAGSLSRFERVETPEQAAL 436

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   L  GD V++K+S      RLI
Sbjct: 437 PLAEWLKPGDTVLLKASRGVALERLI 462


>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 483

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 221/463 (47%), Gaps = 53/463 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +     F  ++G H DGH ++  A   GA   +  +D    + +   PV 
Sbjct: 50  VTSVSFDSRHLERGALFIPLQGAH-DGHQYVETAFTNGAAATLWASDH--ELTNNGHPVL 106

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143
            V D L AL +L      +    ++A+TGS GKTTTK+M+   LS+   + KTYA   ++
Sbjct: 107 VVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQLNVTKTYA---NF 163

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV P IAVIT I  AH+  F   
Sbjct: 164 NNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTR 223

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------ 257
           + IA AK EI  GL++ G +  + D+    LL  ++  +  +T   FG+    D      
Sbjct: 224 DRIADAKMEIVNGLKEDGLLVYDGDEP---LLNERAAKVAQQT-SRFGRQLTDDLYATSV 279

Query: 258 --------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                   F++ +W    EQ  + +             +G +   N L  + +   L   
Sbjct: 280 TAGPRSISFKVNEW--PDEQFTIPM-------------VGEYNVNNALAAMVVAKRLHIS 324

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 AL+     E R + ++    +    ++ + YN+NP + K  +  L+ +    +G
Sbjct: 325 PAHIKTALANVELTENRAEWFKS---KNGAQILSDVYNSNPTAAKQVLKTLAAMPV--QG 379

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIH 423
           RRIAVLGDM E+G+ +   H  LA  ++   I  V+L G  ++ L+  L        +IH
Sbjct: 380 RRIAVLGDMLELGDAAPRLHASLATEINPAQIQEVYLIGTEMVHLQSKLLEQGYPATAIH 439

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +++  +  L   +++ L   D+V++K+S+     +++  + E
Sbjct: 440 YYHANQLGQLTATLEADLTASDMVLLKASHGLHLEQVLAAIKE 482


>gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
 gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
          Length = 452

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 219/463 (47%), Gaps = 25/463 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++ +A  G  +G   Q  ++ +S DSR I  +  F A+ G  +D HDFI    ++GA  +
Sbjct: 8   EIAKACDGRLVGADCQ--ISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAVQEQGATAL 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V+ ++       ++P   V D   AL  +A            A+TGS GKTT KEML  
Sbjct: 66  LVSKEV-----DTTLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKTTVKEMLAS 120

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+   +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T L +P++A+
Sbjct: 121 ILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQPNVAL 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  IA AHL  F  IE +A AK EIFEGL++ G    N D +    L   S     K + 
Sbjct: 181 VNNIAAAHLEGFGSIEGVAKAKGEIFEGLQENGIAIYNLDSNG---LPKWSSLFEGKQVV 237

Query: 249 SFG-KSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           SF     +ADF     +     E S+     +G +++V    IG H   N +    +   
Sbjct: 238 SFAMDDSSADFYASNIEVNAIGEPSFQLNTPKG-NIQVSLGIIGKHNVANAVAAAALAIQ 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A ++   + L      +GR      A       +ID++YNA+  +MKAA+ +L     
Sbjct: 297 AHASLNDIQQGLQELGSVKGRVAVETLASG---LKVIDDTYNASVPAMKAAVDLLGGF-- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +G+R  VLG+M E+GE S + H ++ E  + Y    V   G     + + L    H  
Sbjct: 352 --KGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISE-LCNGRHFE 408

Query: 426 YSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
               ++  +L  +  L+  +   V+VK +NS     +++ L E
Sbjct: 409 TRSDLNA-YLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 450


>gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
 gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
          Length = 457

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 210/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+ +P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNIKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     +GR    +   N     L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRSQV---KGRLLPIQVTPN---LLLLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 452

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 24  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SM+AAI VL+++       RI V+GDM E+G
Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMGELG 368

Query: 383 E 383
           E
Sbjct: 369 E 369


>gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14]
          Length = 453

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 36/392 (9%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I +      N +  DSR +   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV    V    SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  C---VVTLSEV----SLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 116 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VIT    AHL  F   EEIA  K +I +G+E    + +  D    +LL   SH   I
Sbjct: 176 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL--PSHVDLI 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM------ 298
           +    FG  + AD Q+    +  +     V       ++     G + A N ++      
Sbjct: 234 R----FG--EQADLQVTSLVESKDSLTFTVNFMDG--DIFLPVTGKYNATNAMVASYVGK 285

Query: 299 TLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           TLG+        D AIK AL+  +    R   ++ A N     ++ + YNANP +M+  +
Sbjct: 286 TLGV-------PDEAIKSALASLNLTRNR-TEWKKAANGA--DILSDVYNANPTAMRLIL 335

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              + I  +  G++IAVL DM E+G  S   H
Sbjct: 336 ETFTSIPANEGGKKIAVLADMKELGSQSVDLH 367


>gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
 gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
          Length = 463

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 35  VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 91  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 150

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 151 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 210

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 211 VGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFKTATFNLNTCTFGVDSGDVRAENIVLK 270

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 271 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 326

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAA+ VL+++       RI V+GDM E+G
Sbjct: 327 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 379

Query: 383 E 383
           E
Sbjct: 380 E 380


>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale DSM 17629]
          Length = 464

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 140/479 (29%), Positives = 219/479 (45%), Gaps = 42/479 (8%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           TF ++ +A +G  IG   +    + G  IDSR +     F  IKG   DGH FI +  ++
Sbjct: 10  TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIPNVFEQ 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+   ++    G    P   V     A+ KLA   R      ++ ITGSVGKT+TK
Sbjct: 70  GAAIVLSEHELKDPAG----PYVLVGSTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L+ +  
Sbjct: 126 EMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRLSTMSC 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + VIT I   HL      + +  AK E FE +       LN DD     ++  +   G
Sbjct: 186 PDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTVN---G 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME------VQLQGKSMEVVHHGIGYHMAQNML 297
              IY +GK   +D     +    E    +      V  +G+  +   H  G H   N +
Sbjct: 243 KPAIY-YGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGE-FDAQIHIPGEHNVYNAM 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYNANPAS 352
               +   L          L++   K G  K    A    F      T+ID+ YNANP S
Sbjct: 301 AAAAVGLQL---------GLTIAEIKAGIEKAETIAGRTNFIKTHGMTVIDDCYNANPVS 351

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           MK++I VLS    H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G   L
Sbjct: 352 MKSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAG--EL 405

Query: 413 ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           A + A         + +HY E  + +   + S + +GD ++VK+S+   F +++  L E
Sbjct: 406 AKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464


>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
 gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
          Length = 455

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 214/463 (46%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + +Q  +     +  V GI  D+R I   + F    G   DGH+F+  A + GA
Sbjct: 4   TLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  D+         P+  VDD L AL + A          +IA+TGS GKTTTK++
Sbjct: 64  SAAFWQKDVPNPPADF--PLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L    + +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P 
Sbjct: 122 LSGMLRETFRVHRTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSQIAQPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+      EEIA+AK EI  GL+  G +F+   D   E L  +  AL  +
Sbjct: 182 IAIITNIGEAHIEYLGSREEIANAKFEIVTGLKADG-LFIYPGD---EPLLTEHTALPAR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++ +FG++  A       K  SE+       Q    E     IG H   N +  +     
Sbjct: 238 SV-TFGRTDQATIFATTIK-TSEEGTTFTTNQTADREFYVPIIGEHNVFNSMAAMLAAFE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  + +T   AL   H    + +       +G   +++++YN++P ++K  ++    +  
Sbjct: 296 LGVEPETIQTALR--HIDRSKSRLEWLTTPKG-SRILNDAYNSSPTALKTVLNTFLNMPT 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
               ++  VL DM E+G+ S+  H + A  L    ++ V+L G  +    D     I   
Sbjct: 353 --AAKKYLVLADMLELGDFSEQLHQESARTLENGEVAGVFLYGTAMKNFADEAASLIGQE 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            VHY    + L   + ++L   + ++VK S S G   ++  L+
Sbjct: 411 KVHYFTDKEALTDAVSNALTGNEWILVKGSYSMGLKDVVEKLM 453


>gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
 gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
          Length = 457

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 144/477 (30%), Positives = 222/477 (46%), Gaps = 40/477 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E        L I
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE------DYLPI 229

Query: 245 -KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            K +  FG+       D   RK     + +++E   Q   + V     G + A N  M  
Sbjct: 230 DKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIA 281

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISV 359
             V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP +MK  +  
Sbjct: 282 SYVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     
Sbjct: 339 FSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLAS 398

Query: 420 RSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 399 QMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
 gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
          Length = 452

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 213/464 (45%), Gaps = 23/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATQGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVD----GIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  D    + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KTI ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 236 KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F    G   R      +    L D +YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420
                R+IA+LGDM E+G+ ++  H ++ ++L+    S V+  G    F     K A   
Sbjct: 351 GK---RKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +    M   +  I+     GDV++VK S      R++  L
Sbjct: 408 TFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448


>gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
 gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
          Length = 456

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 214/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGH+FI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP + +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 ILHMPENTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   ++D  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDSDIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++   A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 ASNGA--DILSDVYNANPTAMRLILETFSTIPTNPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    V Y       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D +++K SNS    +L+  L
Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452


>gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 436

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G       
Sbjct: 8   VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 63

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143
            VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G++
Sbjct: 64  KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 123

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F G
Sbjct: 124 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 183

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI+ GL   G   +  +D+   + K  +  L   T         A+  + K
Sbjct: 184 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 243

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 244 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 299

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR    +  +     TLID++YNANP SMKAA+ VL+++       RI V+GDM E+G
Sbjct: 300 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 352

Query: 383 E 383
           E
Sbjct: 353 E 353


>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
          Length = 481

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 180/373 (48%), Gaps = 18/373 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR       F AIKG   DGH F+     +GA   +V+ ++  +    ++P   V+D +
Sbjct: 33  DSRQAGSGAVFVAIKGERVDGHGFVDKVADQGAAAAIVDHEVACT----TMPQIVVEDTV 88

Query: 93  GALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            AL  LA        +L     +I +TGSVGKTTTK++L+  LS++  T A IGS+NN I
Sbjct: 89  AALGLLAKHNIDRRRQLPGAFDLIGLTGSVGKTTTKDLLSALLSTLGPTVAPIGSFNNEI 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLT  R+  D  F + E+G +H+GEI  LT +  P+  ++  +  AHL  F   E IA
Sbjct: 149 GLPLTALRVNADTRFFVAEMGANHIGEIARLTRIAPPNTVIVLRVGVAHLGEFGSRERIA 208

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK+EI +GL   GT  LN DD +  ++     A G    +  G +++++         +
Sbjct: 209 QAKSEIVQGLLPGGTAVLNADDDY--VVPMAQFASGDVLWFGQGHTRDSEVHADHIAADA 266

Query: 268 EQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         +V VH GI G H   N L    +       +    + L+  H    
Sbjct: 267 ADHAEFTMTDAHGEQVAVHLGIPGRHNVMNALAAATVALRYGMPLTAIAQTLAAQHTISP 326

Query: 326 RGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEM 381
                     QG  F LID+S+NANP SMKA +  L   + + +GR   R+A+LG M E+
Sbjct: 327 HRMALSTVSRQGASFELIDDSFNANPDSMKAGLDGLRAWNAN-DGRQPFRVALLGAMLEL 385

Query: 382 GELSQSFHIDLAE 394
           G   +  H  + E
Sbjct: 386 GADERELHASVGE 398


>gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 144/477 (30%), Positives = 222/477 (46%), Gaps = 40/477 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E        L I
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE------DYLPI 229

Query: 245 -KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            K +  FG+       D   RK     + +++E   Q   + V     G + A N  M  
Sbjct: 230 DKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIA 281

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISV 359
             V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP +MK  +  
Sbjct: 282 SYVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     
Sbjct: 339 FSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLAS 398

Query: 420 RSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 399 QMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
 gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
          Length = 457

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 217/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIKTAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
 gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
          Length = 474

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 220/467 (47%), Gaps = 36/467 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL    ++  A+ G  +   P   V G +  DSR + P   F A  G   DGHD+   
Sbjct: 1   MIPL-RLAEVAAAVGGRLVAADPTAAVTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
           A++ GA + V+ T  V ++     P+  VDD   AL +LA A   R    T+I +TGS G
Sbjct: 60  AIRAGA-VAVLGTRPVPAV-----PMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++    S +  T A  GS+NN +G P T  +   D  + + E G   +G IR+L
Sbjct: 114 KTSTKDLIAALTSRLGPTVAPPGSFNNELGHPYTALQAGPDTRYLVLEKGARGVGHIRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AH+  F   E IA AK E+   L   G   LN DD     +  +
Sbjct: 174 CDVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVLNADDGLVAAMATR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
           + A  I+    +G++  AD +       +    S+  V  +G++   V  G+ G H   N
Sbjct: 234 TQARVIR----YGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAP--VRLGLTGRHQVSN 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASM 353
            L    +      ++   +  L++   + G     R  + +     T+ID+SYNANPASM
Sbjct: 288 SLAAAAVAR----ELGMPLTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASM 343

Query: 354 KAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           + A+  L+ I   G+ RR +AVLG M E+G      H+++  + +   +  + + G    
Sbjct: 344 EVALRALASI---GQRRRTVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVVGEAAA 400

Query: 413 ALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            + +    S+       V  ++  D + + ++  L  GDVV+VK S 
Sbjct: 401 PIHEGA-TSVRDWGGESVQLTDQADAVEV-LRGDLRPGDVVLVKGSR 445


>gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 217/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLVPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 191/407 (46%), Gaps = 64/407 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA--GLVVVNTDMVASIGSLSIP 84
           + G++IDSR+I     F   KG + DGH FI  A++ GA        T++   +     P
Sbjct: 26  IKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGAVASFSEKGTELSEDVEG---P 82

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V+D L AL  LA A        +IA+TGS GKTTTK+M+   L++  K     G+YN
Sbjct: 83  IIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSNGKTTTKDMIESVLTTEFKVKKTQGNYN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PLT+  +  D +  I E+GMS   EI  L+ +  P IAVIT I  +H+ +    E
Sbjct: 143 NEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSRE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+EI  GL+  GT   + D+          H                       K
Sbjct: 203 GIAKAKSEITIGLKDNGTFIYDGDEPLL-----TPHV----------------------K 235

Query: 265 QCSEQSWMEVQLQGKSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q  +   + V L   +  V H       GIG+ +  +    L I+ I   ++  A  A++
Sbjct: 236 QIQQAKLISVGLGDANSLVCHVDDVETEGIGFTINNDESYVLPILGI--HNMKNAAIAIA 293

Query: 319 VFHP--------KEG---------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           V H         KE          R +R++   N    T+I+++YNA+P SMKAAI  LS
Sbjct: 294 VGHELGLPYATIKENIRHVQLTGMRMERHQTDDN---VTVINDAYNASPTSMKAAIDTLS 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            +    EGR+I +L D+ E+G  SQ  H ++   L   +I  ++  G
Sbjct: 351 SM----EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFTYG 393


>gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 457

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 214/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGQDIAQLAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 462

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 213/456 (46%), Gaps = 53/456 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P   F  ++G ++DGH F+  A  +GA   VV+ D    I   ++  + VDD L
Sbjct: 31  DSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAKAAVVSKDSTVQIPE-NLICWRVDDTL 89

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA+  R R    ++A+TGSVGKTTT+E++T  L+++    +   + NN IGVP T
Sbjct: 90  QAYQQLALLHRQRLSIPVVAVTGSVGKTTTRELITACLTTLGAITSTSDNNNNDIGVPQT 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + +        I E+ M  LGEIR L+    P IAVIT I  AH+      + IA AK E
Sbjct: 150 ILQADFSDAALILEMAMRGLGEIRRLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCE 209

Query: 213 IFEGLEKTGTIFLNYDDSFFE----------LLKAKSHALGIK-TIYSFGKSKNAD---- 257
           I   L  +GT+ +   D   +          +++     LG + T  S+ K    D    
Sbjct: 210 ITTCLNPSGTVIIPAGDPLLDSILSEKWPGRIIRVGLMPLGEEHTSASYIKKNAVDLLGV 269

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L       ++  + + L+G     +H+ + + +A  + + LGI          ++  +
Sbjct: 270 LDLNNNSLSVDKEALTLPLEG-----MHNAVNFMLAIAVALELGI----------SLSNM 314

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           +  H K   G R  C    G  T++DESYN++P S+KA++ +L        GR  AVLG 
Sbjct: 315 NNLHVKTPCG-RNSC-FTYGNLTVLDESYNSSPESVKASLDLLVT----KPGRHFAVLGT 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF- 436
           M E+G+ S  FH       SL     V LS   V+ + D       V   + +    +F 
Sbjct: 369 MFELGDESIKFH-------SLIMQHAVDLSLDGVIVVSDGEEAEAMVAVGKQLPNFSIFS 421

Query: 437 --------IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +QS L  GD +++K+S   G  +L+  L
Sbjct: 422 QPEEALPYLQSILKPGDNLLLKASRKIGLEKLLPFL 457


>gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
 gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
          Length = 609

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 201/403 (49%), Gaps = 36/403 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LVV +   +         V 
Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVVADNTNIKDK-----RVV 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 250 KVIDTIATMQDLATKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +          LG   +   G ++N D+++  ++  
Sbjct: 370 FKAKTELLEFVDKKNT-FVCGDDEY----------LGKLDVNKVGFNENNDYKIESYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323
           ++ S  +  L GK  E+    +G H   N  +T+ +   + +   ++   +K + + +  
Sbjct: 419 NKGS--KFVLDGKEYEM--SLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNM- 473

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R++  +  G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE
Sbjct: 474 -----RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGE 525

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              ++HID+   L    I  ++L G  +    D   ++    Y
Sbjct: 526 NEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568


>gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 442

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 216/453 (47%), Gaps = 31/453 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR    +  FFA+KG ++D H ++  A ++G    VV      +I  L     
Sbjct: 8   VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEGNIARLI---- 63

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI--GS 142
            V D   AL +LA   R +    ++A+TGS GKTT KEM+   L  S++         G+
Sbjct: 64  -VKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDVLFTQGN 122

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H+GEI + T L +P +A++  +  AHL  F  
Sbjct: 123 FNNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGS 182

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261
           I+ +A+AK EIF GL K G   +N   ++ +  +A    +G   +  F   +  ADF   
Sbjct: 183 IDGVATAKGEIFRGLTKNGVAIINLAHNYQQKWQAD---IGRHAVQYFAYDNPRADFYAE 239

Query: 262 KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKA 316
           +    SEQ  S++    QG+ +++    +G H   N L    +   V   TA V   ++ 
Sbjct: 240 QI-HFSEQGASFLLHTPQGR-VQINSPYLGEHNISNALAATALSMNVGATTAQVKKGLET 297

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            S+      +G+ +     +    L+D++YNAN  SMK+AISVL +        R+ V+G
Sbjct: 298 PSLV-----KGRLFPIQPCENLL-LLDDTYNANVGSMKSAISVLQKYPAF----RVFVVG 347

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ +Q  H ++ E      +  V   G     +            +E +  L   
Sbjct: 348 DMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAVNSGRHFTDKTELVTYLTPI 407

Query: 437 IQSSLVDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           IQ  L    VVV VK S S     +I+LL   F
Sbjct: 408 IQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 440


>gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 452

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 200/382 (52%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +SI+S  +  Q+A F     + DGH+FI  A+  GA  +     +V+    ++IP  
Sbjct: 23  IQTVSINSNEVN-QDALFVAIVANRDGHEFIPSAIANGAKAL-----LVSKKQDINIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             ++ +  L  LA   R   K  II++TGS GKTT KEM+   L   KK +   G++NN+
Sbjct: 77  VCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGG-KKVHFTQGNFNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G S  GEI+    +++P++A+IT +  +HL N   ++ +
Sbjct: 136 LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L K G   +N DD   E + A +  L  K I     +++AD  +  ++  
Sbjct: 196 MIEKGELLKALPKDGVCIVNLDD---ERIPAYADKLDCKKITCSMSNQDADIIILDYQVT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   +++++  K        IG H   N +  L I S++ A ++      +  + K  +
Sbjct: 253 PELYDVKIRIFNKEYSYQLPNIGKHNLSNSM--LAIASVVAAGLEPNDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     LN    TL+D++YNA+  +++AAI+ L++     +G+++  +  M E+G+  +
Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIADLAEF----DGKKVIAITSMRELGDEGE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L+   + +++L G
Sbjct: 366 NYHRKMGQWLNKAGLDNIFLFG 387


>gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
 gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
          Length = 457

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 36/392 (9%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I +      N +  DSR +   + F  +KG   DGHDFI  A + G
Sbjct: 8   TLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV    V    SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK+
Sbjct: 67  C---VVTLSEV----SLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 120 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VIT    AHL  F   EEIA  K +I +G+E    + +  D    +LL   SH   I
Sbjct: 180 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL--PSHVDLI 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM------ 298
           +    FG  + AD Q+    +  +     V       ++     G + A N ++      
Sbjct: 238 R----FG--EQADLQVTSLVESKDSLTFTVNFMDG--DIFLPVTGKYNATNAMVASYVGK 289

Query: 299 TLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           TLG+        D AIK AL+  +    R   ++ A N     ++ + YNANP +M+  +
Sbjct: 290 TLGV-------PDEAIKSALASLNLTRNR-TEWKKAANGA--DILSDVYNANPTAMRLIL 339

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              + I  +  G++IAVL DM E+G  S   H
Sbjct: 340 ETFTSIPANEGGKKIAVLADMKELGSQSVDLH 371


>gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter cryohalolentis K5]
 gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter cryohalolentis K5]
          Length = 482

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 210/453 (46%), Gaps = 36/453 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R+I P + F A+ G ++DGHD++  A+ +GA   +V    +A+  + SIP   V 
Sbjct: 51  IATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIV-ARPIATADANSIPQLVVS 109

Query: 90  DVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D   AL +LA   R + +  T+IAITGS GKTT KEML      +  T    G+ NN +G
Sbjct: 110 DTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNNDLG 169

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP+ L  +     + I ELG +H+GEI + T +V+P +A I  I  AHL  F   E I  
Sbjct: 170 VPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGICQ 229

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKW 263
            KAEI+  L  +    +   D F   L     K  SH +G      FG +   D      
Sbjct: 230 TKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG------FGST---DVSASHL 280

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E+S  ++ +  +  ++     G H   N L        L  +V   +  L    P 
Sbjct: 281 DVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIEVSDIVVGLENARPA 340

Query: 324 EGRGKRYRCALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +GR       LN    G   LID++YNANP S++AA  VL+  +    G ++ VLGD+ E
Sbjct: 341 KGR-------LNSQLLGMHRLIDDTYNANPHSVRAAAKVLAAQT----GTQVMVLGDIAE 389

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFL--- 435
           +GE + S H  L   ++   I+ +   G +     +       I+ +     D L     
Sbjct: 390 LGEAAVSEHQSLGRTIATTGINVLLCVGEYAPYTVEGAQEISDINAYAFTDKDSLLAYLK 449

Query: 436 -FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++Q+       V+ K S S     LIN L+EE
Sbjct: 450 PYLQAQQAQPCTVLFKGSRSMEMETLINALVEE 482


>gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 218/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLILAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 456

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 183/384 (47%), Gaps = 23/384 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F N IS+DSR+I  +E F AIKG ++DGH+F+   ++KG   VV+   M  ++     
Sbjct: 26  QSFKN-ISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGVKAVVIKEGM-QNLLPYKF 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P + V D L A  KLA+  R +    ++ ITGSVGKTTTKEM+   L  + K      ++
Sbjct: 84  PFWTVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLSQLNF 143

Query: 144 NNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           NN IGV LT+    +D DF     I E+GM  LG+I  L+    P IAVIT I  +H+  
Sbjct: 144 NNEIGVGLTI----LDSDFKDKTLILEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGI 199

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF 258
               E I  AK EI + L   G + +  +D F  E LK   +   IK        K    
Sbjct: 200 LGSKENITYAKCEITKHLNPKGVVIIPANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSL 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                +    +S   V ++ K  E+     G+H A N L    +   L        K   
Sbjct: 260 NKTNLQGFYNRSNNSVIIEDKIFEISFQ--GFHNAFNFLFVYAVAKELGIKFKDTNKF-- 315

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    GR K     L     T+ DE+YNA+P S+KA I+ L   +P+       + G M
Sbjct: 316 NFVSLNGRNK----ILKSKKTTIYDETYNASPESVKACINNLLD-NPNN---HFLIFGSM 367

Query: 379 CEMGELSQSFHIDLAEVLSLYNIS 402
            E+G  SQ +H DL E++   +I 
Sbjct: 368 QELGNKSQKYHKDLFELIDRSDIK 391


>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 479

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 207/452 (45%), Gaps = 31/452 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P   F A  G   DGHDF   AV  GA + V+ T  V       +P   VD
Sbjct: 31  VVTDSRRVGPGSLFTAFAGERADGHDFAERAVADGA-VAVLATRPVG------VPAIVVD 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  AL  LA     R   T +A+TGS GKT+TK+++   L     T    G+ NN IG+
Sbjct: 84  DVTAALGALARHVVERLGTTTVALTGSAGKTSTKDLIAQLLERKGPTVYPEGNLNNEIGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT  R     +  + E+G  ++G+IR+LT LV P I ++  +  AHL  F   E IA A
Sbjct: 144 PLTALRADESTEHLVLEMGARYIGDIRYLTGLVPPRIGLVLNVGTAHLGEFGSRERIAEA 203

Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           K E+ E L   E+ G   LN DD     +  ++ A     +  FG+  +AD +    +  
Sbjct: 204 KGEMVESLPSGEEGGVAVLNADDPLVRAMAERTRA----RVVLFGEHSSADIRAANVRLT 259

Query: 267 SE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + +    +       +V     G H   N L    +   L    D    ALS    + G
Sbjct: 260 RQGRPAFTLHTPTGCSDVTMRLYGEHHVSNALAAAAVAHELGLSADEIALALS----EAG 315

Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPAS---MKAAISVLSQISPHGEGRRIAVLGDMCE 380
              R+R  + +     T+++++YNANP S      A++ + Q +    GR  AVLG M E
Sbjct: 316 TLSRWRMEVTERPDGVTIVNDAYNANPESMRAALRALAAMGQGAQSRGGRTWAVLGLMAE 375

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLF 434
           +G+ + + H  +  +    N+S +   G        + A  +       VH S+    + 
Sbjct: 376 LGDEALAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVD 435

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L ++S L  GDVV+VK+S S G  R+   LL+
Sbjct: 436 L-LRSELRPGDVVLVKASRSVGLERVAQALLD 466


>gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
 gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
          Length = 464

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/401 (31%), Positives = 198/401 (49%), Gaps = 32/401 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q ++G  +G   +     IS D+R    +  FF +KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
               L   +K  AC        G+ NN +GVPLTL R+  +  F + ELG +H+GEI + 
Sbjct: 119 TAKIL---QKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFTVVELGANHIGEIAYT 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K  
Sbjct: 176 TEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK-- 233

Query: 239 SHALGIKTIYSF---GKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +G   + SF   G+ K++  DF     +     S   +      +E+    +G H  
Sbjct: 234 --EIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNV 291

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   + AD+ TA+KA  +      +G+ Y   + +     ID+SYNAN  SM
Sbjct: 292 SNALAATALAMAVGADL-TAVKA-GLEQRSAVKGRLYPIEIKENVL-FIDDSYNANVDSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           K+A+SVL Q        RI V GDM E+G+ S + H ++A+
Sbjct: 349 KSAVSVLKQYPAF----RIFVAGDMAELGKDSPACHQEVAD 385


>gi|163854998|ref|YP_001629296.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella petrii DSM 12804]
 gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bordetella petrii]
          Length = 943

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 178/382 (46%), Gaps = 17/382 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+RSI   E F A+ G  +DGH ++  A   GA   +V       +   S+P   + 
Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIV----AHPVDGASLPQLVLG 561

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146
           D   AL ++  A R R    +I + GS GKTTTKEM+   L+  +      A  G++NN 
Sbjct: 562 DTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGNFNND 621

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       + ELGM+H GEI  L  L  P +A++T     H      +E +
Sbjct: 622 IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALVTNAQREHQEFMHSVEAV 681

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A       E L + G      DD    + +A++   G + +  FG     D    +    
Sbjct: 682 AQENGASIEALPEDGVAVFPGDDPHCGIWEAQA---GARRVLRFGLQPGLDVYAEQIDAT 738

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   V     S ++V    G H  +N L  +       A +  A++ALS F    GR
Sbjct: 739 PHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGAVRALSAFSAVAGR 798

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R    L+ G   LID++YNANP S++AA+ VL+++       R  VLGDM E+G+   
Sbjct: 799 MQRQ--TLDDGTI-LIDDTYNANPDSVRAAVDVLARLP----APRALVLGDMGEVGDNGP 851

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           + H ++ E    + I  ++  G
Sbjct: 852 AMHREVGEYARQHGIDTLYTLG 873



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR +A  + F A  G   DG  FI  A+ +GA  V+        + +    V  V 
Sbjct: 28  LRLDSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPAPGDVAT-DARVRAVP 86

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+   L +LA     R  +  +++A+TG+ GKT+  + +   L+   K    IG+    +
Sbjct: 87  DLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGTLGAML 146

Query: 148 GVPLTLARMPVDVDF---------------GIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               TL       D                    L  S +G  +     VR  +A  T +
Sbjct: 147 PDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAGFTNL 206

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +E    AKA +F+         +N DD+  E L  ++   G+   Y+   
Sbjct: 207 TRDHLDYHGSMERYEQAKARLFQ-WPGLAAAVINADDAAGERLL-RTLPRGLALGYTQQD 264

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              A FQ R+ +  +      +       +VV   +G H   N+L+  G++  L   +  
Sbjct: 265 VPTA-FQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGWPLAQ 323

Query: 313 AIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             +AL+   P  GR +       R   A  +G   ++D  Y+  P S+  A++ L  ++ 
Sbjct: 324 LARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVD--YSHTPDSLARALAALRPVAD 381

Query: 366 HGEGRRIAVLG 376
              GR + + G
Sbjct: 382 ARGGRLVCLFG 392


>gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           tropica CNB-440]
 gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinispora tropica CNB-440]
          Length = 471

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 214/466 (45%), Gaps = 35/466 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL +  ++  A+ G  +   P   V G +  DSR + P   F A  G   DGHD+   
Sbjct: 1   MIPL-SLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A++ GA + V+ T +VA +     P+  VDD   AL +LA A   R    T++ +TGS G
Sbjct: 60  AIRAGA-VAVLGTRVVAGV-----PMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++    + +  T A  GS+NN +G P T  +   +  + + E G   +G + +L
Sbjct: 114 KTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPETRYLVLEKGARGVGHVSYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AH+  F   E IA AK E+   L   G   LN DD     +  +
Sbjct: 174 CEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPAEGLAVLNADDDLVAAMATR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
           + A     +  +G++  AD +       +    S+  V  +G++   V  G+ G H   N
Sbjct: 234 TRA----RVVRYGEAAEADVRAVDVVLDERGRPSFTLVTPEGRAP--VRLGLTGRHQVSN 287

Query: 296 MLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L    +   L     ++ TA+  L +        +R          T+ID+SYNANPAS
Sbjct: 288 SLAAAAVARELGMPVTELATALGELGLVS-----SRRMDVFERVDGVTVIDDSYNANPAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+  L+        R IAVLG M E+G   Q  H+++  + +   +  + + G    
Sbjct: 343 MAAALRALAGFRRR---RTIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVVGEAAA 399

Query: 413 ALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSN 453
            + +    S+     E++      G    ++  L  GDVV+VK S 
Sbjct: 400 PIHEGA-TSVRDWEGESVQLTDQAGAVEVLRGDLRPGDVVLVKGSR 444


>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
 gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
          Length = 451

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 213/446 (47%), Gaps = 32/446 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  D+R I P E F A +G  +DGH+F+  A+  GA   +V+ D      +   PV  
Sbjct: 31  SGIQTDTRIIKPGEVFLAFRGEKFDGHEFVQTAIANGAIAAIVDDDYE----NPGFPVLQ 86

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + L A  KL    R R    +I +TGSVGKTTTKE++   L +    +   G++NN I
Sbjct: 87  VSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTTTKELIAAVLGTKGNIHKTYGNFNNEI 146

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL  +  + D+ + E+ M   G+I  LT +  P I VIT +  AH+      E IA
Sbjct: 147 GVPKTLLELNAEHDYAVIEMAMRGRGQIAELTQIANPTIGVITNVGTAHIELLGSEEAIA 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK E+   + K     LN+D+    LL A +       + ++G S   D Q        
Sbjct: 207 EAKCELLAEMPKDSVAILNHDNP---LLMATAGKFWSGEVLTYGLS-GGDIQ----GSLV 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + + +EV      + +     G H A N L  L +  +L  +  +    +SV  P  GR 
Sbjct: 259 DNAIVEV----AGLRLPLPLPGRHNATNYLAALAVAKVLGIEWSSLQAGVSVNMPT-GRS 313

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R+    +     ++DE+YNA P +M AA+ +L+        R+IAVLG M E+GE S  
Sbjct: 314 QRFSLPND---VLILDETYNAAPEAMLAALQLLADTPGK---RKIAVLGAMKELGERSAQ 367

Query: 388 FHIDLAEVLSLYNISH--VWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLV 442
            H  + E +    +    V + G    A+    + +P      +++ +  L  F+Q    
Sbjct: 368 LHQRVGETVRNLKLDGLLVLVDGEDAEAIAKSAEGIPSECFATHADLVARLTTFVQG--- 424

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468
            GD V+ K+++S G  R+++ L  EF
Sbjct: 425 -GDRVLFKAAHSVGLDRVVSQLRAEF 449


>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 453

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 229/467 (49%), Gaps = 34/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ GA
Sbjct: 4   TLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63

Query: 66  GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            + +++ ++   +  L+    V  V+D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 64  TVAIID-EVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  LT++ R
Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +  +H+      E I   K  I +  ++  T+ +NY++   + +  + H   
Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKVN-EDHEFK 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I+ I   G  K  D      +   E  S+  V   G+      + +G H   N L+ + I
Sbjct: 242 IEKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +     L+ F     R +     + +  FT+I++ YNA+P SMK+A+SVL  
Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLE----FIKKNNFTIINDCYNASPDSMKSALSVLKT 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAE-VLSLYNISHVWLSGFHVLAL 414
            S     R+IAVLGDM E+G+ ++S H       I  A+ +L+       + SGF     
Sbjct: 355 YSG---SRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKSGFG---- 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 ++  +  E +     ++ + + DGDV++VK+S S  F  ++
Sbjct: 408 ----KGAVSFNCKEDLQN---YLCNLIKDGDVILVKASRSAKFEDIV 447


>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 464

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 193/396 (48%), Gaps = 41/396 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG H+D H ++ +AV++G   VVV  +       +S+P 
Sbjct: 24  MVETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVEQGCVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM-------LTIALSSIKKTYA 138
             V D   AL +LA   + +     +A+TGS GKTT KEM       +T+    +  T+ 
Sbjct: 79  IVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTVCEDEVLYTF- 137

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 138 --GNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTAITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYTGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           F    W +      +E+ L G           +E+    +G H   N L    +   + A
Sbjct: 256 F----WAEN-----VELDLSGSHFTLHSPQGEIEINLPYLGAHNVSNALAATSLAMAVGA 306

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D++ AIK + +    + +G+ Y   +NQ    LID++YNAN  SMK+A++VL        
Sbjct: 307 DLN-AIK-VGLEQRSQVKGRLYPVEVNQHCL-LIDDTYNANVDSMKSAVAVLKNYPAF-- 361

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             RI  +GDM E+G+ S + H  +A+ +   N+  V
Sbjct: 362 --RIFAVGDMAELGDESAACHQQVADFVREANLDLV 395


>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 457

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 207/450 (46%), Gaps = 36/450 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G++IDSR +     F AIKG   DGHDFI   ++ GA   +   D+    G +     
Sbjct: 28  VSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVMENGALCALSEKDL----GDVPYSYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  LA   RL     ++ ITGSVGKT+TKEM+   L          G++NN 
Sbjct: 84  LVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTSTKEMIASVLEQKYSVLKTEGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G++   E+  L  + RP I VIT I   HL N    + +
Sbjct: 144 IGLPLTIFNIREEHEVAVLEMGINEFEEMHRLAKVARPDICVITNIGFCHLENLIDRDGV 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+F+ +     I LN DD   + L    +  GI  ++ FG ++  D+        
Sbjct: 204 LRAKTEMFDFMRDGAQIILNGDD---DKLITVQNVKGIIPVF-FGLTERHDYYATDVHSL 259

Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +   + L   ++    H  G HM  N L    +   L    +   K +    P  G
Sbjct: 260 GLKGTSCILHLPNGTVNANIHLPGAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSG 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R       +    F +ID+ YNANP SMKA++ VLS    +  GR++A+LGDM E+GE  
Sbjct: 320 RNN----LIETDDFLIIDDCYNANPVSMKASLDVLS----NALGRKVAILGDMGELGEDE 371

Query: 386 QSFH-----------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           ++ H            DL  +  +  ++  +++G + +  K          Y  T +   
Sbjct: 372 KALHYGVGVYAAKKETDL--ICCIGTLAQEFVNGANSVTSKS------ETLYFATKEEFL 423

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             + S +  GD ++VK+S+S  F  ++  L
Sbjct: 424 SQMHSIVKKGDTILVKASHSMEFPEIVEAL 453


>gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 463

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 212/438 (48%), Gaps = 31/438 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR + P   F  ++G   DGH+FI  A   GA    V  D +     L  P   
Sbjct: 28  TGVAFDSRRLKPGMLFVPLRG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 84

Query: 88  VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V D L A+ KLA    L +    ++AITGS GKTTTK+M    L++         +YNN 
Sbjct: 85  VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F    +I
Sbjct: 145 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ-----L 260
           A AK EI +GL++ GT   N D+    LL +++  +  ++  +FG   +N  F       
Sbjct: 205 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 260

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R   + + + W E+      M       G +   N L  L +        +   KAL  F
Sbjct: 261 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALVHF 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +    R +  +      ++ + YNANP +MKA I   S+      GR IAVLGDM E
Sbjct: 314 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEF--QTAGRHIAVLGDMLE 368

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435
           +GE S++ H  LA+ L  + I  V+L G  + AL +AL    P+  +H +  +    +  
Sbjct: 369 LGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 428

Query: 436 FIQSSLVDGDVVVVKSSN 453
            +Q+ +   D+V++K+S+
Sbjct: 429 DLQNDVGHDDMVLLKASH 446


>gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 477

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 34/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ISIDSR I  +E F AIKG ++DGH+FI +A+++GA  ++    +     +L   VFG D
Sbjct: 46  ISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIVFGTD 105

Query: 90  -------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                  + + A++ +A   R R +  +I ITGSVGKTTTKE+L   L   + T +  G+
Sbjct: 106 FSFIKVPNTILAMHDIARGFRQRIEK-VIGITGSVGKTTTKEILKTLLKGYQ-TVSTFGN 163

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IG+PL+L R   +  FGIFE+ M   GEI  L  +  P I +IT IA +H+     
Sbjct: 164 FNNEIGLPLSLFRAKKNDKFGIFEMAMRSKGEISQLCSIAMPDIGIITRIAESHIGLLGS 223

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDS-----FFELLKAKSHALGIKTIYSFGKSKNAD 257
           +E IA AK EI   L+   + FLN++       F E+LK K      K +  FGK   +D
Sbjct: 224 MENIARAKGEI---LDFVDSAFLNFNCKYSRKIFGEMLKDKKGKP--KEVIWFGKE--SD 276

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIK 315
             ++  +     S +E  L G+    V       + Q   +L ++ +   L  D +    
Sbjct: 277 LYIKSHEIFIHGSRLE--LSGRFGNFVLRAPNIFLPQFEPLLASVAVARFLGLDWNEIND 334

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  +HP +GR    +     G   +ID+SYNA   S    +  +  +   G  R+I V 
Sbjct: 335 NLQGYHPLQGRFLIKKL----GDQIVIDDSYNATCTSFLKGLETIKSLK-FGNRRKIFVF 389

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-MDGLF 434
           GD+ E G+ S+  H  + + +   +   V+  G   +    ++ R+  + +    +D + 
Sbjct: 390 GDILEAGDKSRDLHKKVIKKIEELDPFLVYFVGTEFVK---SVGRNSKLRFKNLGIDEVK 446

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +   L   D+V +K SNS   ++++ L
Sbjct: 447 EDLAKILSKEDLVYIKGSNSTKTWKVLEL 475


>gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 459

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 208/448 (46%), Gaps = 21/448 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR    +  FFA+KG ++D H ++  A ++G    VV      +I  L     
Sbjct: 25  VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEGNIARLI---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI--GS 142
            V D   AL +LA   R +    ++A+TGS GKTT KEM+   L  S++         G+
Sbjct: 81  -VKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDVLFTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H+GEI + T L +P +A++  +  AHL  F  
Sbjct: 140 FNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261
           ++ +A+AK EIF GL + G   +N   ++ +  +A    +G   +  F   +  ADF   
Sbjct: 200 LDGVATAKGEIFRGLTENGVAIINLAHNYQQKWQAD---IGRHAVQYFAYDNPRADFYAE 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +     + ++  +      +++    +G H   N L    +   + A      K L    
Sbjct: 257 QIHFSEQGAYFLLHTPQGRVQINSPYLGEHNISNALAATALAMNVGATTAQVKKGLET-- 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   +G+ +     +    L+D++YNAN  SMK+AISVL +        R+ V+GDM E+
Sbjct: 315 PSLVKGRLFPIQPCENLL-LLDDTYNANVGSMKSAISVLQKYPAF----RVFVVGDMGEL 369

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ +Q  H ++ E      +  V   G     +            +E +  L   IQ  L
Sbjct: 370 GDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAVNSGRHFTDKTELVTYLTPIIQQQL 429

Query: 442 VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
               VVV VK S S     +I+LL   F
Sbjct: 430 AQQKVVVLVKGSRSMKMEEVIDLLKGNF 457


>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
 gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 474

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 197/391 (50%), Gaps = 23/391 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +F D+++A+ G    ++ +G   G   IS DSR +   + F A+KG  ++G++++  A +
Sbjct: 16  SFDDIVRAVSGK---VILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASK 72

Query: 63  KGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KGA + +V+     S   S    +  V +   AL +LA   R +    II +TGSVGKTT
Sbjct: 73  KGASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTT 132

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+++   L    K +   G++NN IG+P  L ++    +  + E+GM+  GEI  +   
Sbjct: 133 TKDIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKA 192

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP IAVIT +  AH+ N    + I +AK EI +   K  T+ +N D+     L+ K+  
Sbjct: 193 ARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNF- 251

Query: 242 LGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               T+   G  +N+D   + +   + C E    +  ++ +   +++    Y++  N L+
Sbjct: 252 ----TLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIV-NSLL 306

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +    +L    D   + +        R +  R    +  FT+I++ YNANP SMKAAI 
Sbjct: 307 AISCGRLLNMSYDEIREGVKNIKLTSMRMEIIR----KKEFTIINDCYNANPESMKAAID 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           VL +   +   R+IAVLG M E+GE +   H
Sbjct: 363 VLKEFKSN---RKIAVLGTMGELGEEAYKMH 390


>gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 458

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 195/404 (48%), Gaps = 30/404 (7%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+ G  IG   Q  ++ +  D+R +     F A+KG  +D HDF   AV KGAG ++V+ 
Sbjct: 12  AVNGQLIGADTQ--ISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSK 69

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            +      +  P   V D   AL  L    R +  A IIA+TGS GKT+ KEM    L  
Sbjct: 70  RL-----PIDAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQ 124

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                   G++NN IGVPLTL R+  + +F + ELG +H+GEI +  +LV+P  A++  +
Sbjct: 125 CGNVLYTAGNFNNDIGVPLTLLRLEPEHEFAVVELGANHVGEIAYTVNLVKPESALVNNL 184

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG 251
           A AHL  F  +  +A AK EIF+GL   GT  +N D + +   + K +H    + ++ F 
Sbjct: 185 AAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEKITH----QRVWRFS 240

Query: 252 K--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              ++  DF     +   + +  E+     ++ V+    G H   N L    +   + A 
Sbjct: 241 PQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATALTMSVGAT 300

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++   + LS      GR    R    Q    ++D++YNAN  SM AA  VL  +     G
Sbjct: 301 LENVRQGLSELKAVPGRLFPIRLNAQQ---LILDDTYNANVGSMTAAAQVLGSMP----G 353

Query: 370 RRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHV 404
            R+ V+GDM E+G   +  H  +          +VLS+  +SH+
Sbjct: 354 YRVMVVGDMGELGTEEEDCHRQVGIAAREAGIDKVLSVGRLSHL 397


>gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
 gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 218/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E Q+    +   ++     +A  + +  G
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S
Sbjct: 290 VSE---EQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L   + + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLVSQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
 gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
          Length = 463

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 197/392 (50%), Gaps = 23/392 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            +F D+++A+ G    ++ +G   G   IS DSR +   + F A+KG  ++G++++  A 
Sbjct: 4   MSFDDIVRAVSGK---VILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESAS 60

Query: 62  QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KGA + +V+     S   S    +  V +   AL +LA   R +    II +TGSVGKT
Sbjct: 61  KKGASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++   L    K +   G++NN IG+P  L ++    +  + E+GM+  GEI  +  
Sbjct: 121 TTKDIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVK 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP IAVIT +  AH+ N    + I +AK EI +   K  T+ +N D+     L+ K+ 
Sbjct: 181 AARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNF 240

Query: 241 ALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                T+   G  +N+D   + +   + C E    +  ++ +   +++    Y++  N L
Sbjct: 241 -----TLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIV-NSL 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + +    +L    D   + +        R +  R    +  FT+I++ YNANP SMKAAI
Sbjct: 295 LAISCGRLLNMSYDEIREGVKNIKLTSMRMEIIR----KKEFTIINDCYNANPESMKAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            VL +   +   R+IAVLG M E+GE +   H
Sbjct: 351 DVLKEFKSN---RKIAVLGTMGELGEEAYKMH 379


>gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 209/446 (46%), Gaps = 23/446 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I P + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 26  ITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA+      +  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 84  LVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      +EI
Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265
           A AK EI  GL  +G +   Y+++        S   G     +FGKS  ++ + L    +
Sbjct: 204 AKAKLEITAGLNPSGILIYPYEETLL-----LSQIDGDFRQLTFGKSTESEIYPLEIHAE 258

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHP 322
               S+  V      +E+    IG H   N +  +     + I    + TA+K +     
Sbjct: 259 AEGTSF--VTNWEPDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNM----- 311

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R      +    +++++YN++P +++  +     +   G+ + + VL DM E+G
Sbjct: 312 -ERSKSRLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMDSKGKPKYL-VLADMLELG 369

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQS 439
           ELS   H + AEVL    I  V+L G  + A        I    V + +T + L   +  
Sbjct: 370 ELSVLLHQESAEVLEEGTIEKVFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLK 429

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   + ++VK S   G   ++  L+
Sbjct: 430 EITGNEWILVKGSYGMGLKDVVENLI 455


>gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV104]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 220/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E  L    + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLEQVL---DLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
 gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 214/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKELA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+I KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTIYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    +IA  K +I +G+  + ++ L   D   E     S+    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSDIAKGKMQIADGM-SSNSLLLAPADPIVE-----SYLPAD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIR--QAFQDLELTRNRTEWKKAANGADVLSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   I  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVIDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 222/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V ++   VA+      P   VDDVL A   L+     ++   + A+TGS GKTTTK+
Sbjct: 63  AA-VTLSEKKVANH-----PYILVDDVLTAFQTLSAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS   KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSITYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G++ +G++ L   D+  E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMD-SGSLLLAPADTIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 455


>gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 181/386 (46%), Gaps = 19/386 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVF 86
           +GIS DSR+      F A++G  +D H F+      G     V   +V  +   + IP  
Sbjct: 24  DGISTDSRTAPAGSLFVALRGEKFDAHKFM-----DGLAARGVAAVVVERVPKGMEIPAL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIGSY 143
            V D   AL  +A   R +    +I +TGS GKTT KEML   L +        A  G++
Sbjct: 79  IVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAILGTALGADHFLATRGNF 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLT+ R+       + ELGM+H GEI  L+ + +P + ++      H      +
Sbjct: 139 NNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIAQPTLGLVNNAQREHQEFMVSV 198

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A     +   L   G      DD +  L +  + A+G + + +FG S +AD     W
Sbjct: 199 EAVAKENGAVISALPANGIAVFPADDPYAPLWRGLATAIGQRKVMTFGFSDDADVSC-SW 257

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     S ++V+   ++  V     G H  +N L  +     +   +D  ++ L+ F P 
Sbjct: 258 KADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIACALGIGIGIDAIVRGLAAFAPV 317

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMG 382
            GR +R   A       +ID++YNANP S++AAI VL+Q  SP     R+ VLGDM E+G
Sbjct: 318 NGRLQRKHAASGA---QVIDDTYNANPDSVRAAIEVLAQAPSP-----RVLVLGDMGEVG 369

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
              + +H ++        I H++  G
Sbjct: 370 NDGRQYHEEVGAYARGRGIQHLFTLG 395


>gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 217/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALYLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
 gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 462

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 212/438 (48%), Gaps = 31/438 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR + P   F  ++G   DGH+FI  A   GA    V  D +     L  P   
Sbjct: 27  TGVAFDSRRLKPGMLFVPLRG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 83

Query: 88  VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V D L A+ KLA    L +    ++AITGS GKTTTK+M    L++         +YNN 
Sbjct: 84  VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F    +I
Sbjct: 144 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ-----L 260
           A AK EI +GL++ GT   N D+    LL +++  +  ++  +FG   +N  F       
Sbjct: 204 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 259

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R   + + + W E+      M       G +   N L  L +        +   KAL  F
Sbjct: 260 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALVHF 312

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +    R +  +      ++ + YNANP +MKA I   S+      GR IAVLGDM E
Sbjct: 313 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEF--QTAGRHIAVLGDMLE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435
           +GE S++ H  LA+ L  + I  V+L G  + AL +AL    P+  +H +  +    +  
Sbjct: 368 LGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 427

Query: 436 FIQSSLVDGDVVVVKSSN 453
            +Q+ +   D+V++K+S+
Sbjct: 428 DLQNDVGHDDMVLLKASH 445


>gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 218/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLMPADPIVE-----DYLQTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
 gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
          Length = 455

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 183/354 (51%), Gaps = 16/354 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ I  D+R++A  + F A+ G  +DGH+F+  A   GA  +VV+  + +++     P 
Sbjct: 23  MVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEASGAAALVVSRPVDSAL-----PQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D L AL ++    R       +AITGSVGKT+ KEM     + +  T A  G+ NN
Sbjct: 78  ILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKTSVKEMTAAIFAQVGPTLATRGNLNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP+TL  +  +  F + ELG +H GEIR+ + L  PH AVI  I  AHL  F GIE 
Sbjct: 138 TIGVPMTLLELTPEHRFAVIELGANHAGEIRYTSSLALPHAAVINNIRGAHLEGFGGIEG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A AK+EI+E L + GT  +N DD +   L  +   LG +  +++     AD       +
Sbjct: 198 VARAKSEIYEHLGEAGTAIVNLDDEWAPWLLER---LGDQNRFTYSSRGPADLWASALSR 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            ++  +  +  +G++  +V   + G H   N L    + S  TA++     A  +     
Sbjct: 255 DADGCYHFLLHRGEAEVLVRLPLPGRHQVDNALAAAALAS--TAELSLEQIASGLAQAPT 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
             G+    AL+ G   LID+SYNAN AS  AAI ++++     +G  + V GDM
Sbjct: 313 VAGRTQMTALS-GEVMLIDDSYNANAASTMAAIDLMAER----DGSSLLVFGDM 361


>gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11]
          Length = 607

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 200/403 (49%), Gaps = 36/403 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +         V 
Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTNIKDK-----RVV 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 250 KVTDTIATMQNLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +          LG   +   G ++N D+++  ++  
Sbjct: 370 FKAKTELLEFVDKKNT-FVCGDDEY----------LGKLDVNKVGFNENNDYKIENYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323
           ++ S  +  L GK  E+    +G H   N  + + +   + +   ++   +K + + +  
Sbjct: 419 NKGS--KFVLDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNM- 473

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R++  +  G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE
Sbjct: 474 -----RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGE 525

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              ++HID+   L    I  ++L G  +    D   ++    Y
Sbjct: 526 NEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568


>gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
 gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 217/456 (47%), Gaps = 50/456 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     F A+KG  +D HDF    V+ GA  ++V  ++      +  P   V 
Sbjct: 33  VSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVEREL-----DVDCPQVIVA 87

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +   ++ +LA   R +S+A ++ +TGS GKT+ KEM    LS   KT    G+ NN IGV
Sbjct: 88  NTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAGNLNNDIGV 147

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D+ + E+G +H  EI + T++V+P  A++  +  AHL+ F   E +A A
Sbjct: 148 PLTLFRLTHEYDYAVIEMGANHPNEIAYTTNIVKPESALVNNLFAAHLAGFGSPEGVARA 207

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR--KWKQ 265
           K EI++GL   GT  +N  DS+    + +      +T+  YS      ADF     + KQ
Sbjct: 208 KGEIYQGLPDEGTAIVNL-DSYSPHWQFQPR----QTVWYYSLKPQDKADFYPSDIEVKQ 262

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S    +   +   ++ +   G+  H   N+L    +   + A ++     L+    K  
Sbjct: 263 LSTNFTLHTPVGQIAITLPLPGM--HNIANVLAASALAISVGATLEDIRNGLATT--KAV 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+ Y   L+     L D++YNAN  SM AAI+VL+++     G RI + GDM E+G+ +
Sbjct: 319 PGRLYPVQLSPTKVVL-DDTYNANDGSMIAAINVLAKMP----GYRILIAGDMGELGDYA 373

Query: 386 QSFH---------IDLAEVLSLYN----ISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           Q  H           L +VLS+      IS     G H    KD L R I          
Sbjct: 374 QDCHQRVGIAAKDAGLDKVLSVGTLSEMISQFSECGEHFAFKKDLLTRLIP--------- 424

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             L  Q+ +V    ++VK S S     ++N L E F
Sbjct: 425 --LVQQNEVVS---ILVKGSRSSAMEDVVNALKECF 455


>gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
          Length = 432

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 205/461 (44%), Gaps = 37/461 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + ++G  +G    G   G+  DSR IA  E F  +KG   DGH FI  A  +GA   +
Sbjct: 6   LAEIVKGELVG---SGRFGGVHFDSREIAKGELFIPVKG-RRDGHLFINDAFSRGAAGTL 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
               +    G   + V    D L A  +LA   R + K T+I +TGSVGKTTTKE+L   
Sbjct: 62  TERRVELPPGKFQVVV---RDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKELLGKL 118

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L   +  Y    S+NN +GV  TL+ +P    F + ELG +  GEI  LT  V+PH+AV+
Sbjct: 119 LG--RNCYTSKKSFNNLLGVCYTLSNLPESARFLVQELGTNSPGEIARLTKTVKPHVAVV 176

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+  AH   F  +E I   K  I EG E    + +         LK    A    T+  
Sbjct: 177 TTVGKAHTQGFKTLEAIKKEKLSITEGAE-VAVVPVE--------LKEMCRADKCLTV-- 225

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               +    +++ W     ++   ++   + +++     GY +     +   +   L   
Sbjct: 226 ---GRGGTVEVKNWGIKGGRTLFTLKAGKEELQLESSIPGYSIVNAAAVAAAVALELGIP 282

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +   +K +  F P      ++RC++ +    TLID+ YNANP SM+ A+ VL+  +    
Sbjct: 283 LRELVKVVREFSPP-----KHRCSVERLPNGTLIDDCYNANPVSMENAVRVLASFN---- 333

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYS 427
           G ++AVLG+M E+GE     H  L E+L+   I  +   G      +K    +  H    
Sbjct: 334 GPKVAVLGEMLELGEEGPKEHRKLGELLNALGIEELIAFGAQTEETVKTFKGKGFHFTNR 393

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           E       FI      G  V+VK S        + L+ E  
Sbjct: 394 EE---FIKFISEFPFRGKTVLVKGSRGNRLEEAVELIRERL 431


>gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
 gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
          Length = 457

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++  AV +GA  +VV  +      S+ +P  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE   + H ++ + ++L N+  V   G     + +A+         E +D L  
Sbjct: 361 ADMKELGENFLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVSGKHFTDKVEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIETQLQQNKKVVV 434


>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 456

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 200/454 (44%), Gaps = 38/454 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +  DSR       F  I G   D H FI   ++ GA    + T     + +   
Sbjct: 25  QEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIPQVMEAGA----LATLSERVLDNADF 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V+  L A+  +A     + +  ++ ITGSVGKT+TKE++   L+    T    G++
Sbjct: 81  PYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVGKTSTKEVIASVLNQKYHTLKTQGNF 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+PLT+ R+    +  + E+G+S  GE+  L  + RP   VIT I   HL N    
Sbjct: 141 NNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDR 200

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             +  AK EIF+ L   G I LN DD              + T+  + K K   F +   
Sbjct: 201 NGVLKAKTEIFKFLRPEGHIVLNGDDD------------KLITVKEYEKIKPVFFGMSNE 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTA 313
            Q      +   L+G +   +H G           G HM  N L    + +I     D  
Sbjct: 249 CQVYGDKIVSRGLKGMTC-TIHLGDTAFTVDIPMPGRHMVYNALAAAAVGNIYGLTTDQI 307

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              +    P  G   R+R  +    F ++D+ YNANP SMKA++ VL      G GR+IA
Sbjct: 308 KAGIESLEPISG---RFR-MIETDKFLIVDDCYNANPMSMKASLDVLQD----GAGRKIA 359

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM 430
           VLGDM E+GE     H ++ E     +I  +  +G     + +   R+   + V Y    
Sbjct: 360 VLGDMGELGENEVQLHEEVGEHAGKCDIDVLICTGKLCRNMAERAQRTNPDLKVIYEPDR 419

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L   ++  + DGD ++VK+S+   F  ++  L
Sbjct: 420 ESLLEHLEGYVQDGDTILVKASHFMKFEEVVTKL 453


>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
 gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
          Length = 463

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 210/471 (44%), Gaps = 22/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T  D+L A++G  +G        ++ +  DSR+I     F  + G  +DGH +I 
Sbjct: 1   MEPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYIT 59

Query: 59  HAVQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            A++ GA       D  + + G   I    VD    AL  LAV  + +    ++A+TGSV
Sbjct: 60  SALEGGAAACFTQRDRESYLPGKCYI---RVDHTQRALRDLAVWYKKKFDIPVVAVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+M+   L    K     G+ N  IG   TL R+       + E+GM+H GEI  
Sbjct: 117 GKTTTKDMVAAVLGEHYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNHPGEIEV 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           ++ + +P + +IT I  +H+ +    E I  AK EIF   +      LN DD     L+ 
Sbjct: 177 MSAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPLLRTLEG 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I   G +   D+         +     EV+    S +V    +G HM    
Sbjct: 237 KLP----EPILWCGGAPGLDYTADHLVSDGTSNVCCEVKTPHTSCQVEIPALGSHMIYPT 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKA 355
           LM   +        +   + +  F P + R       + +G   T+++++YNANP SM+A
Sbjct: 293 LMAAAVAEHFGVTAEEFRRGVLHFAPTKMRMN----IIQRGEDITILNDTYNANPQSMRA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+ VLS+      GR+IAVLGDM E+G L+ + H  +   L    I  +   G     + 
Sbjct: 349 AVEVLSKTH---SGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAVGELAKNIY 405

Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           DA   ++   VHY  T +     +   +     ++VK+S    F  L   L
Sbjct: 406 DAAREAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRGMAFEDLTEYL 456


>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 462

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 186/395 (47%), Gaps = 28/395 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85
           VN +  DSR   P + FF ++G   DGH F   A  +GA  +V + D+    GS+ + PV
Sbjct: 26  VNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAHRDL----GSIQNTPV 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---- 141
             VDD L AL +L    RL++   ++ ITGS GKTTTKE+L    + + KT   +G    
Sbjct: 82  LAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEIL----AEVLKTRFTVGKNHK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN +G+PL+L     D DF I ELG+++  ++  L  ++ P  A+I  + P HL    
Sbjct: 138 NWNNQLGLPLSLLMQKGDEDFWIMELGINNTTDMDELGEILLPDAALILNVGPCHLEGLG 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A AKA + + L      F+N D  + +L +       + T +   +   AD ++ 
Sbjct: 198 DVSGVARAKARLLDYLRAEHRAFINLD--YPDLKREAGARPDLNTTWFSSRDPEADCRVS 255

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S  +   + L  + +       G H  +N+     +        D     L    
Sbjct: 256 H----SRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVALEYGMQPDEIQAGLEKSS 311

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             E R     C    G +T+ID+SYNANP SM+AA+     ++  G+   + VLGDM E+
Sbjct: 312 LPEQR----MCISRSGDWTIIDDSYNANPMSMQAALETARSLASGGD--LVLVLGDMAEL 365

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG---FHVLA 413
           G      H DL   L     + ++ +G    HVL+
Sbjct: 366 GRDEARAHRDLGRSLCAGAFTALFYNGDNLEHVLS 400


>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
 gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
          Length = 457

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 205/453 (45%), Gaps = 41/453 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+ IDSR +     F AI G + + H FI   ++KGA  V+ + D+    G       
Sbjct: 28  VGGVVIDSRKVQKDYLFVAIDGENVNAHQFIPDTIEKGALCVISHEDL----GDTDFSYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+    AL  +A   R      ++ ITGSVGKT+TKEM+   ++   K +  IG++NN 
Sbjct: 84  LVESTGQALLDIAKLYRDSFDVKVVGITGSVGKTSTKEMIASVVAQKYKVHKTIGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            G+PLT+  +  D    I E+G++H GE+R L+ +  P I VIT I  AHL  F   E I
Sbjct: 144 WGLPLTIFELNEDHQVAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFKTREGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWK 264
              K+++ + ++  GTI  N DD         S A  IK  T   FG   N  F     +
Sbjct: 204 LQEKSKMIQDMKDGGTIIFNGDDDLL------SQAGPIKGATPILFGLGDNCQFYADNIQ 257

Query: 265 QCS-EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSV 319
                 +   + L  + S E V    G HM  N L    +   + + + ++   I+ L  
Sbjct: 258 PMGLRGTSCTIHLPDEYSFECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLPS 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
              +    K  R         ++D+ YNANP SMKAAI VL        GR++AVLG+M 
Sbjct: 318 IPGRNNIIKTDR-------LIILDDCYNANPVSMKAAIDVLDMAI----GRKVAVLGNMG 366

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL------ 433
           E+G   +  H ++ E  + + I  V   G     L D          S +  GL      
Sbjct: 367 ELGNNEKVLHREVGEYAAAHGIDLVCGIGHLAKELVDGATNG-----SSSTRGLWFENKA 421

Query: 434 -FLFIQSSLV-DGDVVVVKSSNSCGFYRLINLL 464
            FL     L+ DGD V+VK+S+      ++  L
Sbjct: 422 DFLDAMKDLIKDGDNVLVKASHGMDLTTIVEAL 454


>gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 497

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 187/373 (50%), Gaps = 22/373 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V+  + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYVALRGERFDGHDFAADAVAQGASGLLVDRLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             V++   AL ++A A   R +AT +IA+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VLVENTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLSILEEAGRVDGTTVYAN 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D D  I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNAD 257
              +  +A  K+ I+  L   G   +N DD+F    + + HA  +  + +  +G   +AD
Sbjct: 198 LGSLLGVARTKSAIYAALPADGVAVINADDAFGAWFEQQLHAQPVHGRRVLRYGLQASAD 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R  + Q     +  V  QG++ ++     G H   N L   G+       +      
Sbjct: 258 LTARGLRLQDGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAAAGLALGAGIALPIIAAG 316

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+   P  GR  +    L+ G   LID+SYNANP S+ AAI  L+       G    VLG
Sbjct: 317 LAQARPVAGR--QIAHTLSSGAV-LIDDSYNANPGSLDAAIDTLAA----APGAGWLVLG 369

Query: 377 DMCEMGELSQSFH 389
           DM E+G   ++ H
Sbjct: 370 DMRELGPEGKALH 382


>gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora
           bispora DSM 43833]
 gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermobispora bispora
           DSM 43833]
          Length = 455

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 211/458 (46%), Gaps = 45/458 (9%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V G + IDSR++ P   F AIKG   DGHDF   A   GA  V+ +  + A     
Sbjct: 23  PEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLASRPVDA----- 77

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             P   V DV+ AL  LA A        T++ +TGS GKTTTK++L      I  T A +
Sbjct: 78  --PAVIVRDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDLLAGLTERIGPTVAPV 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           GS+NN IG PLT+ +      F + EL   ++G I +LT +  P I V+  +  AH+  F
Sbjct: 136 GSHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAYLTRIAPPRIGVVLNVGAAHIGVF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E IA AK E+ E L + G   LN DD +   +  ++ A     +  FG+S  A  + 
Sbjct: 196 GGREAIAKAKGELVEALPEDGVAVLNADDPYVREMAGRTRA----RVTWFGRSAEARIRA 251

Query: 261 RK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                       +  C+      V+L+      +H   G HM  + L    +   L   V
Sbjct: 252 ENETLDERGRASFTLCTPSGSAPVRLR------LH---GAHMVPDALAAAAVAYELGLPV 302

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               + LS   P+     R+R  +       T+I+++YNA+P S++AA + L  +   G+
Sbjct: 303 VAIAEELSRAEPR----SRWRMEVTDRADGVTVINDAYNASPDSVRAAFAALRAM---GD 355

Query: 369 G-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           G RR AV+  M E+GE     + +   + +   +  + + G     +    P +IHV  +
Sbjct: 356 GRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDDAGPILAGAPGAIHVPDT 415

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              D     + S L  GDVV+VK   + G  R+   +L
Sbjct: 416 ---DAAARELASRLAPGDVVLVKGPRAAGLERVAAAVL 450


>gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
 gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
          Length = 438

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 180/364 (49%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 8   VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGALK--- 64

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             V D L AL KLA A R      +  ITGS GKTT KEML   L      +   A  G+
Sbjct: 65  --VGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLATAGN 122

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT +  P++A++     AH+   F 
Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVGCGFD 182

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI+EGL   G   +  +D+     +A +  L  +T   FG + + D    
Sbjct: 183 GVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNAQT---FGVA-SGDIHAE 238

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +        ++    + + VV    G H   N +    +       +      L  F 
Sbjct: 239 NIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFS 298

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  + QG    TLID++YNANP SMK AI VL+ +       RI V+GDM 
Sbjct: 299 NIKG-----RLNIKQGIKGATLIDDTYNANPDSMKVAIDVLAAMP----APRIFVMGDMG 349

Query: 380 EMGE 383
           E+GE
Sbjct: 350 ELGE 353


>gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK355]
          Length = 454

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 212/443 (47%), Gaps = 33/443 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +    +      L      VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGAYIL------VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   + D  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDTDIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR 331
                 + +++     G + A N  M     ++     +TAI +A S       R + ++
Sbjct: 257 GCNFLEQRIDL--PVTGKYNATNA-MIAAYAALQEGVSETAIAQAFSELELTRNRTE-WK 312

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  
Sbjct: 313 KAANGA--DILSDVYNANPTAMRLILETFSTIPANSGGRKLAVLADMKELGADSKSMHGS 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSL 441
           +   L+   ++ ++L G  + AL D   + I+    VHY       +  + L   ++ SL
Sbjct: 371 MITSLNPEILTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVRESL 429

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
              D +++K SNS    +L+  L
Sbjct: 430 TSADQILLKGSNSMNLAKLVEDL 452


>gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 473

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 30/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + + G S  I  P   V G + IDSR +AP   F A  G   DGHD+   AV+ 
Sbjct: 5   SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYARRAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                      V +   + +P   V+DV+GAL  LA A   R   T++ +TGS GKT+TK
Sbjct: 65  -------GAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAGKTSTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L     T    GS NN IG+P+T        +  + E+G   +G IR+L  L  
Sbjct: 118 DLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAATEHLVLEMGARGIGHIRYLADLTP 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + +++ A  
Sbjct: 178 PRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASRTRA-- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  FG++  AD +  K +   + +   E+       +V     G H   N L    +
Sbjct: 236 --RVLLFGEAPEADVRGEKVRMTPDGRPAFELHTPTGCSDVTMRLYGEHHVSNALAAAAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPAS---MKAAI 357
              L   V    +ALS    + G   R+R  + +     T+++++YNANP S      A+
Sbjct: 294 AHELGMSVTEIAEALS----EAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALRAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHV 411
           + + Q      GR  AVLG M E+G+ S + H  +  +    N+S +   G        +
Sbjct: 350 AAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQL 409

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A  +       VH S+    + L ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 410 GAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 455


>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 199/421 (47%), Gaps = 54/421 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W  H +  A+ G    ++ +G    I  D+R++   + F A+ G ++DGH F+  A +K
Sbjct: 116 MWDAHAIAHAVHGK---VLAEGGAGSICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172

Query: 64  GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
               VV N      S G + +      D L AL  LA   R R    ++ +TGSVGKTT 
Sbjct: 173 QCAGVVANWVPHGWSRGFVQVE----GDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228

Query: 123 KEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + M T+AL  +    +   G++NN IGV LTL R+       + ELGM+H GEI  L + 
Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +P + V+  + PAH+ NF  G+EE+A+AK EIF          +N DD    L  A   
Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP---LAMAVPL 345

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----------------------- 277
             G++ +  FG+ + +D +L   K  +    + V L+                       
Sbjct: 346 PAGVRVV-RFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404

Query: 278 ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +E      G H+A N      + + L   +++  ++LS+F P +      RC +
Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPID-----MRCQV 459

Query: 335 ------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 +     +I++ YNANP S++A++ +L  +      RRIA+LGDM E+GE+S S 
Sbjct: 460 EAVGPASHVQILVINDCYNANPMSVEASLQLLQSVK---SNRRIALLGDMFELGEISLSS 516

Query: 389 H 389
           H
Sbjct: 517 H 517


>gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 485

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 214/474 (45%), Gaps = 60/474 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP------- 84
           IDSR    +  F A++G   DGH+F+  A  +GA   +V    V+S+ +L  P       
Sbjct: 36  IDSRLATSECLFVALRGERVDGHEFLADAAARGARGALVRRSKVSSL-TLERPYVVIDPV 94

Query: 85  --------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                         +  VDD   ALN+LA   R      +I ITGSVGKT+TKE+    L
Sbjct: 95  TGEGLERATPDTMLLIAVDDPQAALNRLAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVL 154

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +T     SYN+   +P+ L ++  D    + E+GM   GEI  L  L RP + ++T
Sbjct: 155 QRSFRTLKSPRSYNSEATLPIVLLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVT 214

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + P+HL     IE I  AK+E+ + L + G   LN DD     +   + A      + +
Sbjct: 215 NVGPSHLERMGSIEAIQRAKSELPQALPEDGFAILNIDDPRVRAMAEVTRA----RPFFY 270

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G    AD     W    E       LQG S  V + G G H+    L  LG  S+ TA  
Sbjct: 271 GLDPAADL----WADAIESRG----LQGVSFRVHYQGDGLHLT---LPLLGRHSVHTALA 319

Query: 311 DTAI--------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +         +A+      EG   R          TLID++YNA+PASM+AA+++L++
Sbjct: 320 AASAGLLLGMEWEAIIAGLRSEGAQLRLLAVPGINQTTLIDDTYNASPASMQAALNLLAE 379

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLALK 415
           +    +GRRIA+LGDM E+G + +  H        ++A++L        W++     A +
Sbjct: 380 L----DGRRIAILGDMLELGSIEEEAHRMVGARAAEVAQILIAVGQRARWIANE---AQQ 432

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             LP +  V+  +  D      ++ L  GD V++K S       +++ L    P
Sbjct: 433 AGLP-ADQVYAVDDNDAAAHLARNLLAPGDFVLIKGSRGMFMETIVSQLQAHRP 485


>gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia
           stali symbiont]
          Length = 453

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 200/440 (45%), Gaps = 18/440 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R +     F A+ G  +D +DF   A+  GA  ++VN  +     ++ +P   V 
Sbjct: 27  VTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALLVNRRL-----AVDVPQVVVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A  +L    R ++KA ++ +TGS GKT+ KEM    L    +T    G+ NN  GV
Sbjct: 82  DTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEMTAAILRQCGETLYTAGNLNNDYGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+     + + E+G +H GEI + T+LVRP  A++  +A AHL  F  +  +A A
Sbjct: 142 PMTLLRLTPQHAYAVIEMGANHQGEIAYTTNLVRPETALVNNLAAAHLEGFGSLAGVAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--S 267
           K EIF GL   GT  +N D +     +++      K ++ F     AD + R       +
Sbjct: 202 KGEIFGGLPVHGTAIINADSNDLPNWQSQ---FADKILWRFSPQPMADAEFRASDIVLRA 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +   +      + V     G H   N L    +   + A +      L    P  GR 
Sbjct: 259 DATLFTLHTPRGDIAVELPLPGRHNIANALAAAALALSVDAPLTAIQSGLKTLQPVPGRL 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R A NQ    L+D+SYNAN  SM AA  VL  +     G R+ V+GDM E+G+ +++
Sbjct: 319 FPIRLAGNQ---LLLDDSYNANVGSMTAAAQVLGDMP----GFRVMVVGDMGELGDEAEA 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + E      I  V  +G     + ++  R  H      +      + S   D   +
Sbjct: 372 CHRQVGEAAKAAGIDCVLSTGSFSHLISESSGRGEHFASKAELTERLRTLLSQHAD-ITI 430

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +VK S S    +++  L E+
Sbjct: 431 LVKGSRSAAMEQVVQSLQEK 450


>gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 452

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 198/382 (51%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +SI+S  I  Q+A F     + DGHDFI  A+  GA  +     +V+    ++IP  
Sbjct: 23  IQTVSINSNEI-KQDALFVAIVANRDGHDFIPSALSYGAKAL-----LVSKKQDINIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R   K  II++TGS GKTT KEM+   L   KK +   G++NN+
Sbjct: 77  VCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGG-KKVHFTQGNFNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G S  GEI+    +++P++A+IT +  +HL N   ++ +
Sbjct: 136 LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L K G   +N DD   E + A +  L    I     +++AD  +  ++  
Sbjct: 196 MIEKGELLKALPKDGFCIVNLDD---ERIPAYADKLDCNKITCSMSNQDADIIILDYQVI 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   +++++  K        IG H   N +  L I S++ A ++      +  + K  +
Sbjct: 253 PELYDVKIRIFDKEYSYQLPNIGKHNLSNSM--LAIASVVAARLEPNDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     LN    TL+D++YNA+  +++AAI+ L++     +G+++  +  M E+G+  Q
Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIADLAEF----DGKKVIAITSMRELGDEGQ 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L+   + +++L G
Sbjct: 366 NYHRKMGQWLNKAGLDNIFLFG 387


>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 199/421 (47%), Gaps = 54/421 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W  H +  A+ G    ++ +G    I  D+R++   + F A+ G ++DGH F+  A +K
Sbjct: 116 MWDAHAIAHAVHGK---VLAEGGAGSICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172

Query: 64  GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
               VV N      S G + +      D L AL  LA   R R    ++ +TGSVGKTT 
Sbjct: 173 QCAGVVANWVPHGWSRGFVQVE----GDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228

Query: 123 KEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + M T+AL  +    +   G++NN IGV LTL R+       + ELGM+H GEI  L + 
Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +P + V+  + PAH+ NF  G+EE+A+AK EIF          +N DD    L  A   
Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP---LAMAVPL 345

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----------------------- 277
             G++ +  FG+ + +D +L   K  +    + V L+                       
Sbjct: 346 PAGVRVV-RFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404

Query: 278 ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +E      G H+A N      + + L   +++  ++LS+F P +      RC +
Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPID-----MRCQV 459

Query: 335 ------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 +     +I++ YNANP S++A++ +L  +      RRIA+LGDM E+GE+S S 
Sbjct: 460 EAVGPASHVQILVINDCYNANPMSVEASLQLLQSVK---SNRRIALLGDMFELGEISLSS 516

Query: 389 H 389
           H
Sbjct: 517 H 517


>gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 457

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 219/475 (46%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E Q+    +   ++     +A  + +  G
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S
Sbjct: 290 VSE---EQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENE 455


>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 452

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 212/466 (45%), Gaps = 23/466 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  +++ A  G   G V   F + IS D+R+I     F A++G  +DGHDFI  A++KG
Sbjct: 4   FTLQEIIDATSGTCKGDVSLQFKD-ISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    V++ L A   LA   R R +  ++AITGS GKTTTKE
Sbjct: 63  ATAAIVEKGRSVD----GIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+         ++NN IG+P TL ++  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT +  +H+      E IA AK E+   L       LN DD F   +KA S     
Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHF---VKAMSSIAEG 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT+ ++G   NA       +   +      +   +  +V    IG H   + L  +    
Sbjct: 236 KTV-TYGIHSNATVIGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAAIAAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        K LS F    G   R      +    L D +YNANP+SM  +I  L Q+ 
Sbjct: 295 VLGVKSSKIKKGLSDFT---GTPMRQEIVAFEDIVILND-AYNANPSSMSESIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIH 423
                R+IA+LGDM E+G+ ++  H  +  +L+    S V+  G       K+A    + 
Sbjct: 351 GK---RKIAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFTFGEAANFIAKEAKLAGLE 407

Query: 424 VHYSET---MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           VH   +   M   +  I+     GDV++VK S      R++  L E
Sbjct: 408 VHRCNSHLEMANAYNDIREK---GDVILVKGSRGLRMERVVEELKE 450


>gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 457

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 216/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAYLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E Q+    +   ++     +A  + +  G
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S
Sbjct: 290 VSE---EQIHQAFQDLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
 gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
          Length = 440

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ID+R +     F A+KG  +DGHDF   AV  GAG ++V+  ++     +  P  
Sbjct: 11  ITEVTIDTRQVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL-----VGAPQL 65

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL + A   R +  A ++A+TGS GKT+ KEM+   L          G++NN 
Sbjct: 66  VVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNND 125

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  ++ AHL  F  +  +
Sbjct: 126 IGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGSLAGV 185

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264
           A AK EIF GL   GT  +N D   +   +   H    K ++ F    +++ DF     +
Sbjct: 186 AQAKGEIFAGLPANGTAIINADSHDWPHWQETLHN---KRVWRFSPHAAEDIDFYASDVR 242

Query: 265 QCSEQSW-----------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              + ++           +E+ L G+     H+      A  + M++G      AD+   
Sbjct: 243 ITPQTTYFILHSPFGIVDIELPLPGR-----HNIANALAAAALAMSVG------ADLAAV 291

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L+      GR   +   L  G   L+D+SYNAN  SM AA  VL+++     G R+ 
Sbjct: 292 RQGLTQLQAVPGR--LFPIQLAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVM 344

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           V+GDM E+G+ +   H  + E      +  V   G   LAL DA
Sbjct: 345 VVGDMAELGDTAVDCHRQVGEAAKQAGVDKVLSVGTLSLALSDA 388


>gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
 gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 209/447 (46%), Gaps = 32/447 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F A  G   DGHDF    V+ GA  V+ +         + +P   VDDV 
Sbjct: 34  DSREVESGSLFVAFAGERVDGHDFAAAVVEAGAVAVLASR-------PVGVPAIVVDDVQ 86

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA     R  AT++A+TGS GKT+TK+++   L S   T    GS NN IG+PLT
Sbjct: 87  TALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLT 146

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 +  F + E+G   +G IR+L  L  P + ++  +  AH+  F G E+IA AK E
Sbjct: 147 ALSATEETKFLVLEMGARGIGHIRYLADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGE 206

Query: 213 IFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSE 268
           + EGL   E  G   LN DD     + +++ A     +  FG+S  AD +    +     
Sbjct: 207 LVEGLPPAEDGGAAILNADDPLVRAMASRTKA----RVILFGESDEADVRAENVRLTAGG 262

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q    +       +V     G H   N L    +   L    D   +ALS    + G   
Sbjct: 263 QPSFSLHTPSGCSDVTMRLYGEHHVSNALAAAAVAHELGMSADEIARALS----EAGSLS 318

Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELS 385
           R+R  + +     T+++++YNANP SM+AA+  L+ +   G+GRR  AVLG M E+G+ +
Sbjct: 319 RWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM---GKGRRTWAVLGKMAELGDEA 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            + H  +  +    N+  +   G        + A  +       VH S+    + L ++S
Sbjct: 376 LAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDL-LRS 434

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L  GDVV+VK+S S G   +   LLE
Sbjct: 435 ELRPGDVVLVKASRSVGLESVAQALLE 461


>gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 934

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 182/366 (49%), Gaps = 17/366 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+RSIA  + F A+KG  +DGH ++  A++ GA   VV     A    +++P F + 
Sbjct: 500 ISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDTA----VALPQFVLG 555

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL +++   R +    ++A+TGS GKTTTKEM+          + + A  G+ NN 
Sbjct: 556 DTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRGNLNND 615

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT+ R+       +FELGM+H GEI  L  + +P +A++      H      +E +
Sbjct: 616 IGVPLTVLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVALVNNAQREHQEFMLTVEAV 675

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     + + L   G      DD++ +L    +   G +T+  FG S + D    +    
Sbjct: 676 ARENGTVIDMLPVDGIAVFPGDDAYSDLW---AELAGTRTVLRFGFSPDFDVYADQIHAE 732

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   +     S  +     G H  +N L            +++ ++ L  F+P  GR
Sbjct: 733 PTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSGR 792

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + +  A   G + LID++YNANP S++AAI VL+++    +G+R+ VLGDM E+G    
Sbjct: 793 MQPHALA---GGYQLIDDTYNANPDSVRAAIDVLAEL----DGKRVLVLGDMGEVGANGD 845

Query: 387 SFHIDL 392
           + H ++
Sbjct: 846 AMHAEV 851



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 29/371 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           + +D+R ++  + FFA  G   DG D+I  AV+ GA  +V+  D  AS   ++ +PV  V
Sbjct: 23  LCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQADDRASATPAIDVPVLAV 82

Query: 89  DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
            D+ G L  +      R     +++A+TG+ GKT+  + L  AL++       IG+    
Sbjct: 83  PDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAALNAEGTPCGTIGTLGVT 142

Query: 144 ---NNHIGVPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               N++G  LT          LA M       +  L  S +G  +     VR  IA  T
Sbjct: 143 LPNGNNLGGVLTTPDVLSMHRSLATMRA-AGAQVVALEASSIGLDQGRLDQVRIVIAAFT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     ++    AK  +F      G + +N DD   + L   +        YS 
Sbjct: 202 NLTHDHLDYHGTLDNYQRAKFSLFAWPGLRGAV-VNVDDPAGKQL-VSTLPPASTLAYSI 259

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A  Q +            V  +  +++++   +G H   N+L+  G++  L  D+
Sbjct: 260 SGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQLLTRLVGEHNVANLLLVTGVLQQLGWDL 319

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               + LS     EGR +         A +     ++D  Y   P ++K A+  L  ++ 
Sbjct: 320 SRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVD--YAHTPDALKRALLALRDVAR 377

Query: 366 HGEGRRIAVLG 376
              G+ I V G
Sbjct: 378 VRGGKLICVFG 388


>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
 gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
          Length = 459

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 205/453 (45%), Gaps = 38/453 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR I     F  IKG   DGH FI   ++KGA  +   +++V  + ++S P  
Sbjct: 28  VAGVAIDSRKIEKDWLFIPIKGARVDGHSFIPQVMEKGA--LCTLSEVV--LENVSHPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VD    AL  +A   R      ++ ITGSVGKT+TKEM+   L          G++NN 
Sbjct: 84  LVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTSTKEMIASVLEQKYHVLKTAGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G++H GE+  L  + RP I VIT I   HL N    + I
Sbjct: 144 IGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMARPDICVITNIGLCHLENLIDRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWK 264
             AK E+F+ ++    I LN  DD    +   K      +T   FG S   D F      
Sbjct: 204 LKAKTEMFDFMQPDAKIILNGDDDKLITVTDVKG-----QTPMFFGLSTELDAFADNIHT 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +     + L    ++ +    G HM  N L    +   L    +   K +    P  
Sbjct: 259 HSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGALVGRELGLTAEEIKKGIESLTPVS 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR       L      +ID+ YNANP S KA+I VLS      E R++A+LGDM E+GE 
Sbjct: 319 GRNNMI---LTDSLL-IIDDCYNANPVSTKASIDVLSG----AETRKVAILGDMFELGED 370

Query: 385 SQSFH-----------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
            +  H           IDL  V+ +  +S    +G   L+  + +     VH+    D  
Sbjct: 371 EKELHRQVGVHASEKGIDL--VICIGELSKATAAGAEELSAGNQV-----VHFDTKAD-F 422

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           F  +   L   D ++VK+S+   F  ++  L E
Sbjct: 423 FTKMNELLHKDDTILVKASHGMEFPEIVTRLQE 455


>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
 gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
          Length = 464

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 218/482 (45%), Gaps = 52/482 (10%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           TF ++ +A +G  IG   +    + G  IDSR +     F  IKG   DGH FI    ++
Sbjct: 10  TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIPTVFEQ 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+   ++    G    P   V+    A+ KLA   R      ++ ITGSVGKT+TK
Sbjct: 70  GAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L+ +  
Sbjct: 126 EMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRLSTMSC 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------- 236
           P + VIT I   HL      + +  AK E FE +       LN DD     ++       
Sbjct: 186 PDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTVNGKPA 245

Query: 237 ---AKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               K  A G+ K++Y+    +N  F   K    + +   +  +         H  G H 
Sbjct: 246 IYYGKESASGVHKSVYTT-NIENLGFDGMKAHFVTPEGEFDAHI---------HIPGEHN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N +    +   L          L++   K G  K    A    F      T+ID+ YN
Sbjct: 296 VYNAMAAAAVGLQL---------GLTIAEIKSGIEKAETIAGRTNFIKTHGMTVIDDCYN 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SMK++I VLS    H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +
Sbjct: 347 ANPVSMKSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAA 402

Query: 408 GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           G   LA + A         + +HY E  + +   + S + +GD ++VK+S+   F +++ 
Sbjct: 403 G--ELAKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVE 460

Query: 463 LL 464
            L
Sbjct: 461 AL 462


>gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
 gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
          Length = 450

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 17/390 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R +     F A+KG  +DGHDF   AV  GAG ++V+  ++     + +P   V 
Sbjct: 24  VTIDTRKVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL-----VGVPQLVVK 78

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL + A   R +  A ++A+TGS GKT+ KEM    L          G++NN IGV
Sbjct: 79  DTRLALGQFAAWIRQQVPARVVALTGSSGKTSVKEMTAAILRECGNVLYTAGNFNNDIGV 138

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 139 PLTLLRLTAEYDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCS 267
           K EIF GL   GT  +N D + +   +   H    K ++ FG   +++ DF     +   
Sbjct: 199 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFGLQAAEDIDFYATDVQITP 255

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +   +     ++ +     G H   N L    +   + AD+    + L       GR 
Sbjct: 256 QATHFTLHSPFGTVTIELPLPGRHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGR- 314

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             +   L  G   L+D++YNAN  SM AA  VL+++     G R+ V+GDM E+GE +  
Sbjct: 315 -LFPIQLATGKL-LLDDTYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAID 368

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            H  + E      I  V   G     L DA
Sbjct: 369 CHRQVGEAAKQAGIDKVLSVGTLSQTLSDA 398


>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 20/385 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR +A    F A++G  +D H F+    ++    VV           L++P   
Sbjct: 24  DGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKVAAVVAEK----IPAGLNVPALI 79

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144
           V D   AL ++A   R +    +I +TGS GKTT KEM+   L +        A  G++N
Sbjct: 80  VPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFN 139

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVPLTL R+       + ELGM+H GEI  L+ + +P + ++      H      +E
Sbjct: 140 NDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVE 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A     +   L   G      DD+F  L   +S+A   KT+ +FG S +AD +   + 
Sbjct: 200 AVAQENGAVLASLPADGVAVFPADDAFTPLW--RSYAAQRKTL-TFGFSADADVRC-TYA 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                + M V    +   +     G H  +N L  +     +    +  ++ L  F P  
Sbjct: 256 ANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVS 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGE 383
           GR +R   A       +ID++YNANP S++AAI VL+Q+ SP     RI VLGDM E+G 
Sbjct: 316 GRLQRKLAASGA---LVIDDTYNANPDSVRAAIDVLAQMASP-----RILVLGDMGEVGN 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
             + +H ++        I HV   G
Sbjct: 368 DGRQYHEEIGAYARANGIEHVLALG 392


>gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
 gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 219/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ QA+   + + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLTPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
 gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
          Length = 464

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 217/453 (47%), Gaps = 28/453 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V  +  D+R   P+ A FFA+KG  ++GH F+  A  KGA   VV+      +   
Sbjct: 22  PDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAEAGAKGALGAVVS-----RLPEQ 76

Query: 82  SIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            +P    +  V DVL AL +LA   R  +   +I +TGS GKTTTK++L   L+   +  
Sbjct: 77  PLPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGSTGKTTTKDLLAAVLAVRHRVL 136

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+ NN IGVPLTL  +  + +F + E+ M   GEI  L+ L  P+ AVIT I  AHL
Sbjct: 137 ATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALSALAEPNAAVITNIGEAHL 196

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +  IA AK EI + +   G   L  +  F E    +      K IY FG+S  A 
Sbjct: 197 ERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRCRG---KVIY-FGESDKAQ 252

Query: 258 FQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            +L  +    E+  +  V+      E      GYH A N    + I   L    +   + 
Sbjct: 253 VRLLSYTSLGEKGCVFRVRTATGEEEYQLPLPGYHNALNCTAVIAIARQLGFSPEEVQEG 312

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVL 375
              F   +  G R      +G FT+I+++YNANPASM  A+ VL+++   G+GRR +AVL
Sbjct: 313 ---FRRVQTSGMRLEIEHWRG-FTVINDAYNANPASMAGALEVLAEL---GKGRRKVAVL 365

Query: 376 GDMCEMGELSQSFHIDLAE----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           GDM E+GE + + H ++ E    V  L  +           AL   +P    V    T++
Sbjct: 366 GDMLELGERTVAAHREVGEKAAAVADLLVVVGERARDLAAGALSAGMPPD-RVLAVATVE 424

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                + + L   +V++VK+S + G  R++  L
Sbjct: 425 EAIRQLMNELEGDEVLLVKASRAMGLERVVQAL 457


>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 453

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 228/467 (48%), Gaps = 34/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ GA
Sbjct: 4   TLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63

Query: 66  GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            + +++ ++   +  L+    V  V D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 64  TVAIID-EVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  LT++ R
Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +  +H+      E I   K  I +  ++  T+ +NY++   + +  + H   
Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKVN-EDHEFK 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I+ I   G  K  D      +   E  S+  V   G+      + +G H   N L+ + I
Sbjct: 242 IEKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +     L+ F     R +     + +  FT+I++ YNA+P SMK+A+SVL  
Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLE----FIKKNNFTIINDCYNASPDSMKSALSVLKT 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAE-VLSLYNISHVWLSGFHVLAL 414
            S     R+IAVLGDM E+G+ ++S H       I  A+ +L+       + SGF     
Sbjct: 355 YSG---SRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKSGFG---- 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 ++  +  E +     ++ + + DGDV++VK+S S  F  ++
Sbjct: 408 ----KGAVSFNCKEDLQN---YLCNLIKDGDVILVKASRSAKFEDVV 447


>gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
 gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
          Length = 493

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 208/444 (46%), Gaps = 25/444 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V    +DSR + P   F A+ G   DGHDF   AV             V +   +S+P 
Sbjct: 26  LVTAAVVDSRLVEPGALFVALPGARVDGHDFAAGAVAA-------GARAVLAARPVSVPA 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D  GAL  LA   R  +KAT++AITGS GKTTTK++L   L S+  T A  GS+NN
Sbjct: 79  VLVADPAGALMALAAHVRTLTKATVLAITGSSGKTTTKDLLADLLGSLGPTLAPPGSFNN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIE 204
            IG+PLTL R+  D ++   E+G   +G I  L  + RP + V+  +  AH+  ++ G  
Sbjct: 139 EIGLPLTLLRLEPDTEYVALEMGARGIGHIAALCQVARPQVGVVINVGSAHVGEYADGRA 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK E+ E    T  + LN DD     ++ ++     + + +FG + +AD +  +  
Sbjct: 199 GIAQAKGELAEA--ATDVVVLNADDPLVAAMRPRAAG---RRVVTFGVAADADVRAERIA 253

Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              + ++  ++    +   V    +G H   N L        +      A  AL+   P+
Sbjct: 254 LDAAGRASFDLVTDAERHRVALALVGEHQVGNALAAAAAALAVGMTPTAAAAALAAARPR 313

Query: 324 EGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISPHG--EGRRI-AVLGDM 378
                R+R  +        +++++YNANP SM+AA+  L  +   G  + RR  AVLG M
Sbjct: 314 ----SRWRMEVTTAPSGLVVVNDAYNANPESMRAALRALVGLGADGGPDRRRTWAVLGPM 369

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+G  +++ H +L    +   +    + G       + A      V +   +D     +
Sbjct: 370 GELGTAAEAEHAELGRFAARLGVDRTVVIGEAARPLAQAAAGAGARVDWVADVDAAAELL 429

Query: 438 QSSLV-DGDVVVVKSSNSCGFYRL 460
            ++ + D DVV+VK+S + G  R+
Sbjct: 430 ATAALGDADVVLVKASRAAGLERV 453


>gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
 gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
          Length = 478

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 222/483 (45%), Gaps = 49/483 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + +  D  +A+  H    V QG V  + +  DSR I P + F A++G  +DGH+F+  A+
Sbjct: 9   MMSLLDASRALSAHHA--VAQGAVRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAAL 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +V+       G  S+P+  VDD   AL  LA   R R    +I +TGS GKTT
Sbjct: 67  KAGAAAAMVDARGFTEFGDASLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTT 126

Query: 122 TKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            KEM    L +  +          A  G+ NN IG+PLTL  +       + E+GM+H G
Sbjct: 127 VKEMCAEILRAQARRDGAGDEAVLATRGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPG 186

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---S 230
           EI +LT L RP +A++     AHL     + E+A  K  I++GL   G   +N DD    
Sbjct: 187 EIAYLTGLARPTVAIVNNAQRAHLQGLGTLGEVAQEKGAIYQGLGAAGVAVVNADDPHAG 246

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHHG 287
           ++  L A       + I SFG  + AD       +C+     S + +       EV    
Sbjct: 247 YWRDLNAG------RPIVSFGIDQPADVA----GECTLHGLGSQLHIAAPQGRGEVELQV 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESY 346
            G H A N L             + A++ L+++   EG RG+  R +  QG   ++D+SY
Sbjct: 297 PGLHNASNALGAAAACLAAGVVFEAALEGLALY---EGTRGRLQRRSGPQG-AVILDDSY 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP S++A I VL+    H       VLGDM E+G+ S   H ++        I  ++ 
Sbjct: 353 NANPDSVRAGIDVLASTPGH----TFLVLGDMGEVGQTSAQVHDEIGGYAKSKGIDGLY- 407

Query: 407 SGFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 AL +A   ++       H+ ++++ L   +   L    VV+VK S      R+ 
Sbjct: 408 ------ALGEASAIAVRNFGEGAHHFDSVEALVAALAPRLDADAVVLVKGSRFMKMERVA 461

Query: 462 NLL 464
           + L
Sbjct: 462 DAL 464


>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
 gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
          Length = 466

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 216/473 (45%), Gaps = 48/473 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++ +A+ G  +   P   V G +  DSR       F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAEAVGGRLVAADPAALVTGPVEFDSRKAGAGGLFVAFPGEKVDGHDYAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
           AV  GA  V+   ++        +P+  V D L A+ +LA A   R  A T+I +TGS G
Sbjct: 60  AVAGGAVAVLGTREVP------GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   D  F + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLTVRLGPTVAPPGSFNNELGHPWTALQADQDTRFLVLEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   +++ A+
Sbjct: 174 CEVVPPRISVVLNVGVAHLGEFGSVENIALAKGELVESLPADGLAVLNADDPLVDVMAAR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
           + A     +  +G++ +AD +            ++  V  +G +   V  G+ G H   N
Sbjct: 234 TAA----RVVRYGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSA--AVRLGLTGRHQVSN 287

Query: 296 MLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L    +   L    A++  A+  L +        +R          T+ID+SYNANPAS
Sbjct: 288 SLAAAAVARELGMPLAELAAALGELGLVST-----RRMDVFERPDGVTVIDDSYNANPAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A+  L+ +   G GR +AVLG M E+GE  +  H+++  + +   +  + + G    
Sbjct: 343 TAVALRALAGM--RGAGRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVVG---- 396

Query: 413 ALKDALPRSIHVHYSETMD------------GLFLFIQSSLVDGDVVVVKSSN 453
             + A P  IH   +   D                 ++S L  GDVV+VK S 
Sbjct: 397 --EPAAP--IHEGATAVEDWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR 445


>gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
 gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV200]
 gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 219/475 (46%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E Q+    +   ++     +A  + +  G
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S
Sbjct: 290 VSE---EQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENE 455


>gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
 gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 219/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ QA+   + + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLTPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
 gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
          Length = 482

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 207/455 (45%), Gaps = 21/455 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V  ++ DSRS+ P + F A+ G  +D HDF+   V +GA  V+V+    A +    
Sbjct: 26  PDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSG 85

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139
           + V  V D   AL +LA   R +    ++A+TGS GKTT KEM++   +         A 
Sbjct: 86  VAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFACAVGEDARLAT 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I      H   
Sbjct: 146 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLATIAQPTVALINNAQREHQEF 205

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255
              +E +A+  A +   L   G      D +    +  L +A   A G + +  FG    
Sbjct: 206 MVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLDFGIEGG 262

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A          ++   ++VQ  G         +G H A+N L             +   +
Sbjct: 263 AVSA--TVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAATACALAAGIAPEVIAQ 320

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           ALS F P +GR +R +  ++ G   ++D++YNANP S++AAI  L+ +       R  VL
Sbjct: 321 ALSAFAPVKGRLQR-KPGVHGGL--VVDDTYNANPDSVRAAIDALATLP----APRWLVL 373

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G    +FH ++        I  V  +G     + DA       H++ + + L  
Sbjct: 374 GDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGGGAR-HFA-SAEALIE 431

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               ++  G  V+VK S      R+++ L+ + PA
Sbjct: 432 QGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 452

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 211/442 (47%), Gaps = 19/442 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF+  A + GAG ++V+  +      + +P  
Sbjct: 24  IDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKENGAGALLVSRKL-----DIDLPQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    L     T    G+ NN 
Sbjct: 79  VVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + +F + ELG +H GEI +   L  P  A++  +A AHL  F  +E +
Sbjct: 139 IGVPMTLLRLTKEHEFAVIELGANHQGEIAWTVSLTCPEAALVNNLAAAHLEGFGSLEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL   G   +N D++  + L  +S  +G +  + F   + N+DF       
Sbjct: 199 AKAKGEIYTGLPADGIAIMNADNN--DWLNWQS-IIGSRKTWRFSPNAANSDFTATNIHV 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +      ++V+    G H   N L    +   + A  D     L+      G
Sbjct: 256 TSHGTEFTLNTPTGGVDVLLPLPGRHNIANALAAAALSMAVGASHDAIKTGLANLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R      A N+    L+D+SYNAN  SM AA+ VLS++     G R+ V+GDM E+G+ S
Sbjct: 316 RLFPIPLAENK---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMGELGDES 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDG 444
           ++ HI + E      +  V  +G    A+  A     H    +E ++ L   I    +  
Sbjct: 369 EACHIQVGEAAKAAGLDCVLSAGKLSQAISQASGVGEHFATKAELIERLNALIAEKQI-- 426

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
             V+VK S S     +++ L E
Sbjct: 427 VTVLVKGSRSAAMEEVVHALQE 448


>gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
 gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
          Length = 457

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 209/450 (46%), Gaps = 34/450 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I   + F  +KG   DGH+FI  A + GA       D+ A    +     
Sbjct: 26  INQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFENGALATFTEKDLPADQAHIL---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A  KLA     ++   +IA+TGS GKTTTK+M+   L++  +TY   G+YNN 
Sbjct: 81  -VEDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T   MP D +  + E+G  H+G+I  L+ L +P  AV+T I  AHL  F   ++I
Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQ 265
           A  K ++ +G+     + +  D      L +         +  FG+  +    +L ++K 
Sbjct: 200 AQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLE------VVRFGEGSDLTVSELTEYKD 253

Query: 266 --CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 ++++ Q+   ++ V     G + A N ++   +        +    AL+     
Sbjct: 254 HLTFSTNFLDGQI---TLPVT----GKYNATNAMVAAYVAKHWGVTEENIFSALANLQLT 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R   ++ A N     ++ + YNANP +MK  +   S I  +  G++IAVL DM E+GE
Sbjct: 307 KNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGE 363

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLF 434
            S   H  +   L+   I  V   G  +  L     +     HV+Y       +  D + 
Sbjct: 364 QSVQLHTQMILSLAPDAIDTVIFYGEDIADLSQLASQMFPIGHVYYFKKTADEDQFDAMV 423

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             I+ SL + D +++K SNS    R++  L
Sbjct: 424 KRIKESLGEHDQILLKGSNSMNLARVVEEL 453


>gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 457

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 140/478 (29%), Positives = 219/478 (45%), Gaps = 42/478 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+   + + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V ++   VA+      P   VDDVL A   LA     +S   + A+TGS GKTTTK+
Sbjct: 63  A-VVTLSEKEVANH-----PYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+   P D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTEKLVLEMGQDHLGDIHLLSKLAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+   G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-APGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEVTDLIERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIAAY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S I  +  G++IAVL DM E+G+ S   H  +   LS   ++ V   G  +  L    
Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLNTVIFYGEDIAELSQLA 397

Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 398 SQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
 gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
          Length = 457

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   +++ +     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V ++   VA+      P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AA-VTLSEKKVANH-----PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPIVEDYLPTD------ 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLIERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIR--QAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGVNDQILLKGSNSMNLAKLLESLENE 455


>gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 457

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 205/451 (45%), Gaps = 43/451 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  DSR + P   FFA+ G  +DG+ F   A +  A +VV     V      S  V  V
Sbjct: 29  GVCTDSRHLPPHAVFFALGGEKFDGNLFAPEASRTAAAVVV---SRVEEGMDPSCAVILV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L AL KLA   R     T+I +TGS GKT+TK++    LS   +T A  G+ NNHIG
Sbjct: 86  EDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQGFRTIATQGNLNNHIG 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++ R     +  ++E+GM+H GE+  L  + RP I +IT+I  +H+      E IA 
Sbjct: 146 VPLSILRATPSDEAAVWEMGMNHSGELAPLCEMTRPKIGIITSIGTSHMEYLGSRENIAR 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---------FQ 259
            K  +   L + G +    D  + ++++  + A  I      G  +  +         F 
Sbjct: 206 EKCTLARCLPEDGFMIFPADCDYADMIRQSTRAACIDCGIGAGTVRAENPVSTENGTRFI 265

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           L     C E    EV+L       VH   G HM  N L+            +     L+ 
Sbjct: 266 LSIPDFCRE----EVELP------VH---GRHMVTNALLAAAAGWAAGLAKEQIASGLN- 311

Query: 320 FHPKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               + R  G R  C    G   ++D++YNANP SM+AA+  ++ +S    GRR AVLG 
Sbjct: 312 ----QARLTGGRLHCTRINGIL-VVDDTYNANPDSMQAALHTVAGLS--CTGRRFAVLGR 364

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-----RSIHVHYSETMDG 432
           M E+G  S+  H+ +        +  V   G     + DA+      +S+H   +E    
Sbjct: 365 MGELGAFSEEGHVLVGRTAEELRLDCVVSVGTDAARITDAISPNAFTQSLHFGSAEEA-- 422

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +++S    GD+V+ K S      +++NL
Sbjct: 423 -AEWLRSHTAPGDIVLFKGSRLARMEQVMNL 452


>gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 467

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 186/386 (48%), Gaps = 18/386 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + + ++G  IG      ++ +S D+R+      F A+KG ++D HDF    V++      
Sbjct: 9   IAEQVEGRLIG--SDCTIDAVSTDTRADLTDALFIALKGKNFDAHDF----VEQAIAKGA 62

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                   + S    +  V++   AL +L  A + +     +A+TGS GKTT KEML   
Sbjct: 63  AAIICEKKVDSECRQII-VENSRHALGRLGAAIKAKVAPKTVAVTGSNGKTTVKEMLAAI 121

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS      A  G++NN IGVPLTL R+  +  + + ELG +H GEI + T LV+P +A++
Sbjct: 122 LSIRHPVLATQGNFNNDIGVPLTLLRLQEEHKYAVVELGANHPGEISYTTDLVKPDVAIL 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++ AH+  F  +  +A AK EIF G+   GT     D  F+   +     +  KT   
Sbjct: 182 NNVSAAHVEGFGSLHGVARAKTEIFRGVGGQGTAITPRDSEFYPCWQRACSDMQWKT--- 238

Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           FG S +AD         SE      + L G++ ++     G H   N L      S L  
Sbjct: 239 FGLSDSADVYASDVTLNSEGHPSFTLHLGGETKQLELKLSGRHNVLNALSAAAAASELGI 298

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++     L    P +GR    + +       +ID++YNA+ AS KAA+ +L       +
Sbjct: 299 SLNDIANGLQQVQPAQGRLTTIKVS---DHLRIIDDTYNASVASTKAALDLLGSY----Q 351

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAE 394
           G RI VLGDM E+G  ++++H D+ E
Sbjct: 352 GYRIFVLGDMGELGADARAYHEDIGE 377


>gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 464

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 221/451 (49%), Gaps = 40/451 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           +DSR ++    F A+ G   DGHD    AV  GA LV+ + ++        +P   VDDV
Sbjct: 31  VDSRKVSAGALFVALVGESSDGHDHAAGAVADGAALVLASRELDG------LPCVVVDDV 84

Query: 92  LGALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             AL  +A     RLR+     + A+TGSVGKTTTK++L   LS    T     S+NN I
Sbjct: 85  TRALGLVAAEHLRRLRASGPLQVAAVTGSVGKTTTKDLLGHVLSESGPTVMPRASFNNEI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLT+     +  + + E+G S  G++ +LT +  P ++++  +  AHL  F G++ +A
Sbjct: 145 GLPLTVLEAGPETRYLVLEMGASAPGDLTYLTGIAPPDVSIVLAVGAAHLGGFGGLDGVA 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-----LRK 262
            AK+EI  GL   G   LN DD     ++     L    + +FG  ++A  +     + +
Sbjct: 205 RAKSEIVTGLRPEGVAVLNADDHRVVAMR----DLAPSRVVTFGTVRDAGVRAHRVSVDR 260

Query: 263 WKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             + S Q  +  +    S+ +V  HH      A    + LG+      D+DTA   +S  
Sbjct: 261 LGRVSCQVVVGERTADLSLRLVGEHHLTNALAALTAAVELGV------DLDTAAALVSSV 314

Query: 321 HPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGD 377
                    +R A+ +     T+ID+SYNANP SM+AA+  L+ ++  G  RR +AVLG+
Sbjct: 315 DAA----SPHRMAVTERPDGVTVIDDSYNANPDSMRAALKALAVVA--GRDRRSVAVLGE 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGL 433
           M E+G  S+  H ++  ++   NI  + + G     L D   +       V   E +   
Sbjct: 369 MLELGPDSRDQHDEIGRLVVRLNIKLLVVVGAGASGLADGATQEGSWGEEVVEVEDVPAA 428

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             F+   L  GDVV+VKSSN  G +RL + L
Sbjct: 429 ERFLAEELRSGDVVLVKSSNGSGLWRLGDAL 459


>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
 gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
          Length = 473

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 188/375 (50%), Gaps = 13/375 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VASI 78
           P   V+ I+ DSR++    AF A+KG   DGHDF   A+  GA LV+V  D+    +A  
Sbjct: 23  PLSRVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFA 82

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                 +  V D   AL+ LA A R    A ++ +TGSVGKTTT+ +    LS+  KT +
Sbjct: 83  REAGCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVLSARFKTES 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NN +G+PLT+   P D +  + E+GM   G+I  L  + RP  A+IT +  AHL 
Sbjct: 143 TKGNFNNELGLPLTVLTAPKDCEALVVEMGMDGRGQIARLAAVARPERAIITNVGTAHLE 202

Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKN 255
                E IA AKAEI E L +  G  FL  D  F + +   A+    GI+ +   G+   
Sbjct: 203 YLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERGIRVVRFGGEGHA 262

Query: 256 ADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +D    +    +E +    +  QG+S        G H  QN      I       +    
Sbjct: 263 SDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIGLSYGMSLPDVC 322

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL+    + GR    R  + +G + L+D++YNA+P SM A++SVLS  S  G   RIAV
Sbjct: 323 HALAGAQAQAGRQALLR--MPEG-YRLLDDAYNASPESMAASLSVLSSFSTSGS--RIAV 377

Query: 375 LGDMCEMGELSQSFH 389
           LGDM E+G  S + H
Sbjct: 378 LGDMGELGSASDAGH 392


>gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 503

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/430 (30%), Positives = 209/430 (48%), Gaps = 30/430 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  V+V+  + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             VD+   AL ++A A   R +AT ++A+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VVVDNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256
              +  +A  K  I+  L   G   +N DD+F   FE  + +S  +  + +  +G   +A
Sbjct: 198 LGSLLGVARTKGAIYAALPADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGLQASA 256

Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +   R+ +       +  V  QG++ ++     G H   N L   G+   L A +   + 
Sbjct: 257 EITARQLRLHTGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A  +   +   G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VL
Sbjct: 314 ADGLAQARAVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGL 433
           GDM E+G    + H           +  ++  G    A   A      V   ++E +D L
Sbjct: 369 GDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGARVFATHAELIDAL 428

Query: 434 FLFIQSSLVD 443
               Q+ LVD
Sbjct: 429 ----QADLVD 434


>gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           zeae Ech1591]
 gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae
           Ech1591]
          Length = 453

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 19/382 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +S D+R +     F A++G  +D HD+   AV  GA  ++V+  +      + +P 
Sbjct: 23  IISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGAAALLVSKHL-----PIEVPQ 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM    L          G++NN
Sbjct: 78  LVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEMTASILRQCGNVLYTAGNFNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP  A++  +A AHL  F  +E 
Sbjct: 138 DIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG--KSKNADFQLRK 262
           +A AK EIF GL   G   +N D +     +A+    L  KT++ F   +    DF    
Sbjct: 198 VAQAKGEIFGGLPAQGVAIINADSND----EARWQDVLAGKTLWRFSPQECDGVDFYAGD 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +     +   +      + V     G H   N L    +   + A ++     L     
Sbjct: 254 IRISERGTDFVLHSPMGDIAVTLPLPGRHNIANALAATALALAVGASLEAVKVGLEQLQA 313

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR   +  AL  G   L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G
Sbjct: 314 VSGR--LFPIALAPGKL-LLDDSYNANVGSMTAAVHVLAEMP----GYRVMVVGDMAELG 366

Query: 383 ELSQSFHIDLAEVLSLYNISHV 404
           + +Q+ H  + E     NI  V
Sbjct: 367 QDAQACHRQVGEAACKANIDKV 388


>gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM
           22836]
          Length = 429

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 136/438 (31%), Positives = 218/438 (49%), Gaps = 27/438 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R+      FFA+KG +++G+++   A+ +G    VV+ +  A+  ++ +    V 
Sbjct: 16  ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPNIIL----VK 71

Query: 90  DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D L  L +LA   R +  K  IIAITG+ GKTTTKE++   LS      A  G+ NNHIG
Sbjct: 72  DSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + +  I E+G SH+GEIRFL  +  P+  +IT +  AH+  F   E +  
Sbjct: 132 VPLTLLRIKKEHEIVIVEMGASHVGEIRFLAEMALPNYGLITNLGHAHIEGFGSFENVVK 191

Query: 209 AKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           AK E++E +   K G IF++Y +    LL+  S   GI +IY +G   +  F   K    
Sbjct: 192 AKGELYEFIRSTKDGKIFIDYSNL---LLREMSE--GITSIY-YGLEDDL-FISGKVTSI 244

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +E +   K  +V  + IG +   N L  + I   L        KA+  + P   R
Sbjct: 245 SPFLALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASLICKAIEEYVPTNNR 304

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N     LI ++YNANP SM AA+     +  +    ++ +LGDM E+G  + 
Sbjct: 305 SQLKKTEKNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDTD 357

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A+ +S +N   V   G +   +K   PR       + +D L  +++   V+   
Sbjct: 358 MEHQKIADYISDHNFERVMFIGDNFSRVKTKYPR------FKNLDDLKEYLKKDPVEDSY 411

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      + I++L
Sbjct: 412 ILLKGSRGVQLEKCIDML 429


>gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 212/442 (47%), Gaps = 39/442 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR + P   F  + G   DGH+FI  A   GA    V  D +     L  P   
Sbjct: 28  TGVAFDSRRLKPGMLFVPLHG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 84

Query: 88  VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V D L A+ KLA    L +    ++AITGS GKTTTK+M    L++         +YNN 
Sbjct: 85  VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F    +I
Sbjct: 145 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGI---KTIYSF---GKSKNA 256
           A AK EI +GL++ GT   N D+       + +       G+    T+++    G   + 
Sbjct: 205 ADAKMEITDGLKEDGTFIFNGDEPLLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHT 264

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +F + +W + +      + + G+          Y++  N L  L +        +   KA
Sbjct: 265 EFTVEQWPELT----FSIPIMGE----------YNVV-NALAALLVGRRFHVKPEAMQKA 309

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F     R +     + +    ++ + YNANP +MKA I   S+      GR IAVLG
Sbjct: 310 LAHFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFQ--TAGRHIAVLG 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMD 431
           DM E+G+ S++ H  LA+ L  + I  V+L G  + AL +AL    P+  +H +  +   
Sbjct: 365 DMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKS 424

Query: 432 GLFLFIQSSLVDGDVVVVKSSN 453
            +   +Q+ +   D+V++K+S+
Sbjct: 425 TMIRDLQNDVGHDDMVLLKASH 446


>gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 136/438 (31%), Positives = 212/438 (48%), Gaps = 31/438 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR + P   F  + G   DGH+FI  A   GA    V  D +     L  P   
Sbjct: 27  TGVAFDSRRLKPGMLFVPLHG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 83

Query: 88  VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V D L A+ KLA    L +    ++AITGS GKTTTK+M    L++         +YNN 
Sbjct: 84  VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F    +I
Sbjct: 144 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----- 260
           A AK EI +GL++ GT   N D+    LL +++  +  ++  +FG   +N  F       
Sbjct: 204 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 259

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R   + + + W E+      M       G +   N L  L +        +   KAL+ F
Sbjct: 260 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALAHF 312

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +    R +  +      ++ + YNANP +MKA I   S+      GR IAVLGDM E
Sbjct: 313 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEFQ--TAGRHIAVLGDMLE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435
           +G+ S++ H  LA+ L  + I  V+L G  + AL +AL    P+  +H +  +    +  
Sbjct: 368 LGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 427

Query: 436 FIQSSLVDGDVVVVKSSN 453
            +Q+ +   D+V++K+S+
Sbjct: 428 DLQNDVGHDDMVLLKASH 445


>gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
 gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
          Length = 428

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 217/439 (49%), Gaps = 30/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           ++ DSR+      FFA+KG  +DG+ +   A+  G    V+ N D    IG  +I V   
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF--IGERTILV--- 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G+ NNHIG
Sbjct: 71  DNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  D +  + E+G SH G+I+ L  + +P+  +IT +  AHL  F   E +  
Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFGSFEGVIK 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ + +T G IF+N D+ +      K  A GI+ + ++G  + A F       C+
Sbjct: 191 TKGELYDYMRRTKGKIFINQDNKYL-----KEIANGIEQV-TYGSDETA-FAWGCVVSCN 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E + QGK   V  H IG +   N L+ + +        +   +A++ + P   R 
Sbjct: 244 PYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERISRAITAYEPTNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELS 385
           +  +   N+    LI ++YNANP+SMK A+   +   +SP     +  +LGDM E+G  S
Sbjct: 304 QLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSP-----KALILGDMRELGPTS 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H ++   +   N   V+L G H    + A  +    +   T + L   ++ + ++G 
Sbjct: 355 DELHTEVVARIKEGNYDKVFLCGEH---FQKAAGKDFTTY--ATTEELIEALRKNPLEGY 409

Query: 446 VVVVKSSNSCGFYRLINLL 464
            V++K S+     R++ +L
Sbjct: 410 HVLIKGSHGMALERVVEVL 428


>gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
          Length = 428

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 217/439 (49%), Gaps = 30/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           ++ DSR+      FFA+KG  +DG+ +   A+  G    V+ N D    IG  +I V   
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF--IGERTILV--- 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G+ NNHIG
Sbjct: 71  DNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  D +  + E+G SH G+I+ L  + +P+  +IT +  AHL  F   E +  
Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFGSFEGVIK 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ + +T G IF+N D+ +      K  A GI+ + ++G  + A F       C+
Sbjct: 191 TKGELYDYMRRTKGKIFINQDNKYL-----KEIANGIEQV-TYGSDETA-FAWGCVVSCN 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E + QGK   V  H IG +   N L+ + +        +   +A++ + P   R 
Sbjct: 244 PYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERISRAIAAYEPTNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELS 385
           +  +   N+    LI ++YNANP+SMK A+   +   +SP     +  +LGDM E+G  S
Sbjct: 304 QLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSP-----KALILGDMRELGPTS 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H ++   +   N   V+L G H    + A  +    +   T + L   ++ + ++G 
Sbjct: 355 DELHTEVVARIKEGNYDKVFLCGEH---FQKAAGKDFTTY--ATTEELIEALRKNPLEGY 409

Query: 446 VVVVKSSNSCGFYRLINLL 464
            V++K S+     R++ +L
Sbjct: 410 HVLIKGSHGMALERVVEVL 428


>gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
 gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
          Length = 470

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 182/393 (46%), Gaps = 35/393 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F AIKG  +D HDF+    ++    V+V      +  + ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV----ARTPENWNVPAIRVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL  LA   R + +  ++A+TGS GKTT KEM+     A        A  G++NN 
Sbjct: 85  DTRAALGALARGWRRQFEMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL R+       + ELGM+H GE   L  L  P +AV+      H    + +E +
Sbjct: 145 IGLPLTLFRLHAAHRLAVVELGMNHPGETELLAKLAEPTVAVVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   GT     DD++  + +    A G + I         DF L   ++ 
Sbjct: 205 ALEHASVIHALSPQGTAVFPADDAYASIWRVA--ATGNRII---------DFALNSAERT 253

Query: 267 SEQSWMEVQLQGKSM---------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +E + ++    GK +         +V    +G H A N L            +D   + L
Sbjct: 254 TEAA-VKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNALAATSAALAAGVSLDAIQRGL 312

Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375
             F   +GR +  + AL      T+ID++YNANP SM+AAI VL S+ SP     R+ V+
Sbjct: 313 ESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAIDVLASRASP-----RVLVM 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           GDM E+G+   +FH ++        I  ++  G
Sbjct: 368 GDMGEVGDNGPAFHREIGAYAKERGIDALYAMG 400


>gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 424

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 209/441 (47%), Gaps = 36/441 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG+  D+RS+   + + ++KG +++G+ F   A++ GA L V++        ++      
Sbjct: 14  NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYTVL----- 68

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II +TGS GKTTTKE++   LS    T A  G+ NNHI
Sbjct: 69  VDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKGNLNNHI 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    + GI E+G +H GEI  L  + +P+   IT    AHL  F G E + 
Sbjct: 129 GVPLTLLSMDSTTEIGIVEMGANHQGEIAMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++  L     + F+N  D           A GI T+ +FG +++      K+   
Sbjct: 189 KGKSELYNYLRDNEEMAFINDTDKL-----QVEKATGI-TLQTFGSTES------KYPIS 236

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  ++L  K+  +    IG +   N+ + + + +     +D     +  + P   R
Sbjct: 237 LVDGSESLKLSFKNTTINSQLIGIYNYSNIAVAIAMGTYFDVSIDQIKSGIEEYIPANNR 296

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     + +  + +I ++YNANP SM AA+  L   +       IA +G+M E+G  S+
Sbjct: 297 SQ----IIKKDSYRIILDAYNANPTSMAAALENLKATNT----TTIAFIGNMFEVGVTSK 348

Query: 387 SFH---IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + H   +DLA  LS   I  V+  G        ++P+ ++    E  +       S + +
Sbjct: 349 AEHQAMLDLAHHLS---IDQVYAIGPDFCT---SVPQ-VNQEVYEDYNAFAKAYSSKIPN 401

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  V++K S      R++NLL
Sbjct: 402 GATVLIKGSRGMKMERILNLL 422


>gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
 gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
          Length = 611

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 200/403 (49%), Gaps = 36/403 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +         V 
Sbjct: 203 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTNIKDK-----RVV 253

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 254 KVIDTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 313

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 373

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +          LG   +   G ++N D+++  ++  
Sbjct: 374 FKAKTELLEFVDKKNT-FVCGDDEY----------LGKLDVNKVGFNENNDYKIESYEFS 422

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323
           ++ S  +  L GK  E+    +G H   N  + + +   + +   ++   +K + + +  
Sbjct: 423 NKGS--KFVLDGKEYEM--SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNM- 477

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R++  +  G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE
Sbjct: 478 -----RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGE 529

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              ++HID+   L    I  ++L G  +    D   ++    Y
Sbjct: 530 NEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 572


>gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 434

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 194/393 (49%), Gaps = 20/393 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P   FFA+KG  +DG+ F   A++KG  L VV+   V       +    VD
Sbjct: 16  VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDERYLL----VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R      +I ITG+ GKTTTKE++   LS+        G+ NNHIGV
Sbjct: 72  DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +    I E+G +  G+I  LT + RP+  +IT I  AHL  F  +E +   
Sbjct: 132 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNFGLITNIGRAHLQGFGSLEGVRRT 191

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ +   G I FLN+DD           + G++++ S+G S  AD  +R     + 
Sbjct: 192 KEELYDFIRAEGGILFLNFDDDTL-----IDMSQGLQSV-SYGTS--ADATVRGLIVANN 243

Query: 269 QSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             ++ + L   S E  V  + +G +   N L  +          +  + AL+ + P   R
Sbjct: 244 TPYLCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKPSNNR 303

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +           +LI ++YNANP SM+AA+     +  H +   + +LGDM E+G  S+
Sbjct: 304 SQWIETERGN---SLIVDAYNANPVSMRAALDNFDSL--HTDKPLVLILGDMNELGAESK 358

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             H+ L E ++      + L G  + AL D+ P
Sbjct: 359 REHMALLERINTGRYRQILLCGPCLTALADSFP 391


>gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
          Length = 456

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 178/356 (50%), Gaps = 22/356 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR     + F A+ G ++D HDF+   + KGA  +V  +D+    G   +P     D L
Sbjct: 34  DSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIVSRSDLAGVAGCFFVP-----DTL 88

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNNHIGV 149
            AL ++A A R      +  ITGS GKTT KEML   L +        A  G++NNHIG+
Sbjct: 89  HALQQMAAAWRKAVNPFVFGITGSSGKTTVKEMLAAVLRAKFGADAVLATAGNFNNHIGL 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIAS 208
           PLTL  +     + + E+GM+H GE+  LT +  P  A++     AH+   F+G+ +IA 
Sbjct: 149 PLTLLNLRGHHRYAVIEMGMNHFGELAALTRIAAPDTALVNNAMRAHIGCGFNGVADIAR 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+EI++GL + G   L  +D+   + +A  +  G+KT+ +FG ++  D           
Sbjct: 209 AKSEIYQGLPENGVALLPAEDANLPVFQAACN--GLKTL-TFG-AEQGDIHAENIDLQPL 264

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S  ++    + + V     G H   N      +       +      L+ F   +GR +
Sbjct: 265 SSTFDLVYGTERVRVSLPAAGRHNVANACAAAALAVQAGVSLAEIAIGLAAFGNIKGRLQ 324

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGE 383
           + R   N     ++D++YNANP SMKAA+ VL+ Q +P     R+ V+GDM E+GE
Sbjct: 325 QKRGIRNA---LILDDTYNANPDSMKAALDVLAKQPAP-----RVFVMGDMGELGE 372


>gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
 gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
          Length = 452

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 16/369 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF   A   GAG ++V+  +     +  +P  
Sbjct: 24  IDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  +LA   R +    ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  +  + + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL + G   LN D++ +   +A    +G + ++ F   + N+DF     + 
Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    +++V+    G H   N L    +   + AD+      L+      G
Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLQAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R   +Q    L+D+SYNAN  SM AA+ VLS++     G R  V+GDM E+G  S
Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRTMVVGDMAELGAES 368

Query: 386 QSFHIDLAE 394
            + H ++ E
Sbjct: 369 AACHREVGE 377


>gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 468

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 209/447 (46%), Gaps = 36/447 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----VFG 87
           +DSR++ P + F A +G   DGH +I  A+ +GA +V+     V+       P    +FG
Sbjct: 36  VDSRAVEPGDGFAAFQGESTDGHLYIESALARGASVVLAERGRVSEKLPAQWPQVTFIFG 95

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                 AL +LA A   RL     + A+TGSVGKTTT+  L   +S+ ++T+A  G+YN 
Sbjct: 96  HRSET-ALAELARAYLVRLPDLKHVAAVTGSVGKTTTRSFLARIMSASQRTHAASGNYNT 154

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG  + +   P DV   + E+G +H GEI  +     P  A IT +APAHL  F  ++ 
Sbjct: 155 LIGCSVAVLSAPFDVQCLVLEMGANHPGEIAQMVSFFPPTAAAITEVAPAHLEGFGSVQG 214

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--W 263
           +   KA IF G      + LN D+     L ++ +      + +FG+  +  F+  +  W
Sbjct: 215 VLREKAGIFGGGRLKDAV-LNADNPLLAELASQINT----PVTTFGRDGSLSFEDDRLEW 269

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +  + S   +   G  + V     G H    +   L +   +      A++    F   
Sbjct: 270 DEGFKVS-ARLCYSGDRVPVSVRLSGKHGLYPLCCALALAVRMGVPFRQAVREAVSFESL 328

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GRG+  R  L  G F LIDESYNA+P SM AAI  L ++     GR+ A+LG M E+G 
Sbjct: 329 PGRGEVVR--LQNGAF-LIDESYNASPKSMTAAIQSLGEVQIR--GRKFALLGSMGELGA 383

Query: 384 LSQSFHIDLAEVLSLYNI------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            + + H  + EV               W SG    A  + L     V  +  + GL    
Sbjct: 384 GASAAHQQVMEVARGQGFDWWGAYGSDWQSGAK--ATDNLLTDWEEVRRA--VAGL---- 435

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +L  GDV++VK S++CG  RL+  L
Sbjct: 436 --NLRSGDVLLVKGSHACGLERLVKEL 460


>gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
 gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
          Length = 427

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 208/441 (47%), Gaps = 22/441 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ID+R +     F A+KG  +DGHDF   AV  GAG ++V+  ++     +  P   V 
Sbjct: 1   MTIDTRKVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL-----VGAPQLVVK 55

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL + A   R +  A ++A+TGS GKT+ KEM+   L          G++NN IGV
Sbjct: 56  DTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNNDIGV 115

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 116 PLTLLRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAKA 175

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267
           K EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF     +   
Sbjct: 176 KGEIFAGLPANGTAIINADSNDWPHWQEMLHN---KRVWYFSPRGAEDIDFYASDVRITP 232

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +   +     ++ +     G H   N L    +   + AD+    + L+      GR 
Sbjct: 233 QATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQGLAQLQAVPGR- 291

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             +   L+ G   L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+ +  
Sbjct: 292 -LFPIQLSAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVLVVGDMAELGDTAVD 345

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGD 445
            H  + E      +  V   G     L DA     H     T+      L ++  ++   
Sbjct: 346 CHRQVGEAARQAGVDKVLSVGSLSQTLSDASGNGEHFQDKNTLAARVSELLLEHPVI--- 402

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
            V++K S S     ++  L E
Sbjct: 403 TVLIKGSRSAAMENVVRALQE 423


>gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
 gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54]
 gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
          Length = 457

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 216/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E Q+    +   ++     +A  + +  G
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S
Sbjct: 290 VSE---EQIHQAFQDLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 452

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 16/369 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF   A   GAG ++V+  +     +  +P  
Sbjct: 24  IDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  +LA   R +    ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  +  + + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL + G   LN D++ +   +A    +G + ++ F   + N+DF     + 
Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    +++V+    G H   N L    +   + AD+      L+      G
Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLQAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R   +Q    L+D+SYNAN  SM AA+ VLS++     G R  V+GDM E+G  S
Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRTMVVGDMAELGAES 368

Query: 386 QSFHIDLAE 394
            + H ++ E
Sbjct: 369 AACHREVGE 377


>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens str. 13]
 gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
           perfringens str. 13]
          Length = 453

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGNFSENIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 457

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 226/468 (48%), Gaps = 25/468 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++ H++   +    IG+     ++ I+I+S  I  Q  F A+ G  +DGHDF   A+  G
Sbjct: 4   FSLHEIAPVLNAKYIGM--DLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++VN  ++     L +P   V D   AL  LA   R +  + +IAITGS GKT+ KE
Sbjct: 62  AQALLVNHHIL-----LDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M T  L     T A  G++NN IGVP+TL R+    +F I ELG S  GE+  L+ +V  
Sbjct: 117 MTTSILKECGHTIATQGNFNNMIGVPITLLRLTKKNNFAIIELGTSSPGELVQLSKIVAA 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++A++  + PAHLS F  + +I   K +IF  L+  GT  +N D     L +     L  
Sbjct: 177 NVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGIINADSHALSLWRK---PLKG 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGI 302
           K+++ F    N           SE++ +   L     +  VV   +G H   N L    +
Sbjct: 234 KSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLSMLGTHNVANALAASAL 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + A++   +  L   + K   G+ +   L +G   L+D++YN+N  SM +AI VL+ 
Sbjct: 294 AFSVGANLSEVVYGLE--NIKTLPGRLFPIILGEGKL-LLDDTYNSNVGSMISAIHVLTT 350

Query: 363 ISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +     G RI V+ DM E+G+  S  +H  + ++++  NI+ +   G     +     + 
Sbjct: 351 M----PGYRILVVSDMLELGKYKSIKYHCYIGKLIATTNINKILTIGSVSCCISKICGKG 406

Query: 422 IHVHYSETMDGLFLFIQS--SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            H       + L ++I+   S+ +   V+VK S      ++IN + +E
Sbjct: 407 KHF---RNKNKLIIYIKQMLSIHNSISVLVKGSRGFKMEQIINAIRDE 451


>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
 gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
          Length = 462

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 189/396 (47%), Gaps = 24/396 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           ++T   L     G  IG  P+   V+GIS DSR+I P E F  ++G  +DGHD++    +
Sbjct: 1   MFTPEQLTTITHGRLIG--PETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTE 58

Query: 63  KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +   + + N   +       ++    V D L AL  LA A R R   T+I +TGS GKTT
Sbjct: 59  RRIQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   L  + +     G+ NN IG+P  L ++  +  + + E+GMS  GEI  L  +
Sbjct: 119 TKEMLAAILDQVDQGLKTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEPGEIDRLAEI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKA 237
             P I ++    PAHL +   +E +A AK E+ + ++  G   +N DD    S  +   A
Sbjct: 179 ACPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRIASLHQNPSA 238

Query: 238 KSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +  + GIK      ++  A   + + +K  + +  +E++L+          +G H   N 
Sbjct: 239 RRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLK---------ALGQHNIYNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L     +  L   ++T  + L  F P  GR      + N+    LID+SYNANPAS  AA
Sbjct: 290 LAAAAGLLELVG-LETIAEGLEAFVPYTGRFHLETLSNNR---LLIDDSYNANPASCAAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ++ L  I   G  R    LGDM E+G      H  L
Sbjct: 346 LATLQGIK--GNRRAFVALGDMLELGRDELELHRQL 379


>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 453

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 216/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPSAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLILGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
          Length = 483

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 221/472 (46%), Gaps = 60/472 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84
           DSR ++  + F A+ G + DGH F+    ++G  + +V+ D         A+   L  + 
Sbjct: 31  DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRTEILNQGWATADELDQLT 90

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134
           V  V D   AL +LA A   +LR++A         +I ITGS GKTTTK++    LS+  
Sbjct: 91  VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 150

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T A + S+NN +G+PLT+    V  ++ + E+G S  G+I +LT +    +A++  +  
Sbjct: 151 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 210

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL ++S +E +A+ KA I E L  +G   LN DD   E +  ++     + +Y F   K
Sbjct: 211 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 266

Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301
           N      D +L +  + S      +    VQLQ   +   HH      A  +    G   
Sbjct: 267 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNAVAAAAIAHVAGMTP 323

Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I ++L+     +   +++ H  +G               LID++YNANP S++AA+ V
Sbjct: 324 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 370

Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415
              I+  G  RR+  VLGDM E+GE S   H ++    +   IS +   G    H+ +  
Sbjct: 371 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 427

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            AL R    H           +Q  +  GD+++VK S+  G ++L   + E 
Sbjct: 428 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLAQEIEER 479


>gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
          Length = 471

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 209/449 (46%), Gaps = 36/449 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVDD 90
           DSR   P   F A  G   DGHDF    V             VA +G+  + +P   VDD
Sbjct: 34  DSREAGPGSLFVAFAGERVDGHDFAAAVVG---------AGAVAVLGTRPVGVPAIVVDD 84

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  AL  LA     R  AT++A+TGS GKT+TK+++   L     T    GS NN IG+P
Sbjct: 85  VQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLP 144

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT      +  F + E+G   +G IR+L  L  P I ++  +  AH+  F G E+IA AK
Sbjct: 145 LTALSATEETRFLVLEMGARGIGHIRYLAGLTPPKIGLVLNVGSAHIGEFGGREQIAQAK 204

Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC- 266
            E+ E L    + GT  LN DD +   + +++ A     +  FG+S  AD      +   
Sbjct: 205 GELVEALPSEAEGGTAILNADDPYVRAMASRTKA----KVILFGESGEADVSAENVRLTD 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + Q    +     + +V     G H   N L    +   L    D    ALS    + G 
Sbjct: 261 TGQPAFRLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIAVALS----EAGS 316

Query: 327 GKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGE 383
             R+R  + +     T+++++YNANP SM+AA+  L+ +   G+GRR  AVLG M E+G+
Sbjct: 317 LSRWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM---GKGRRTWAVLGKMAELGD 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
            + + H  +  +    N+S +   G        + A  +       VH S+    + L +
Sbjct: 374 EALAEHDAVGRLAVRLNVSKLVAVGGREAAWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 432

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +S L  GDVV+VK+S S G   +   LLE
Sbjct: 433 RSELRPGDVVLVKASRSVGLEGVAQALLE 461


>gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 464

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 184/387 (47%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM   A   ++K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEM---AAKILQKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +E+    +G H   N L    +   + AD+      L
Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 + +G+ Y   +N      ID++YNAN  SMK+A+SVL          RI  +GD
Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ S++ H  +A+ +   N+  V
Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395


>gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 509

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 229/506 (45%), Gaps = 60/506 (11%)

Query: 11  LQAIQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-- 65
           + AI G S+  V  P   V G +  DSR +     F A+ G   DGHDF   A+++GA  
Sbjct: 9   IAAITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVA 68

Query: 66  ---------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA 108
                      ++V      +  + +  ++  D+      V+GAL+ LA  V +RL ++ 
Sbjct: 69  VLAARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQ 128

Query: 109 --TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ +TGS GKT+TK++L     +  +T A  GS+NN +G+P T  R      F + E
Sbjct: 129 GLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCDEHTRFLVAE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTI 223
           +    +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L      G  
Sbjct: 189 MSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEALPAAADGGVA 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGK 279
            LN DD F   +  ++ A  +   YS  + + AD Q      +    +  S+       +
Sbjct: 249 VLNADDPFVASMAPRTQAKVV--YYSANRPQAADAQYYATDIELDDVARPSFTFHAPGVE 306

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M +     G H   N L      + + + V+  + A ++   +     R      +   
Sbjct: 307 PMSIKLQVFGKHQVSNALAAA--AAAIESGVEPTVAARALSGHQTSSAHRMDVRTRRDGV 364

Query: 340 TLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           T+ID+SYNANP SM AAI+ L+  S    + R IAVLG+M E+G  +   H  L  VLS 
Sbjct: 365 TVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRILGSVLSK 424

Query: 399 YNISHVWL--SGFHVLALKDALPRSIHVHYSET------------MDGLFLFIQSSLVD- 443
           Y+++H+     G H +A+ +A     H H  +T            ++ +     + + D 
Sbjct: 425 YHVNHLVAVGEGAHTVAMVEAA----HAHGIQTELCPDIEAATAAVENILRVAPAGVEDW 480

Query: 444 -----GDVVVVKSSNSCGFYRLINLL 464
                 DVV+VKSSN+   +R+   L
Sbjct: 481 SARAAKDVVLVKSSNAQRLWRVAEQL 506


>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. WH 7803]
 gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 7803]
          Length = 471

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 211/453 (46%), Gaps = 37/453 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P   F  ++G  +DGH F+  AV++GA    V +D   ++    +  + V 
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVASDCAHAVPD-GLLHWKVA 90

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R +  A ++A+TGS GKTTT+E++  AL+ +    A   + NN IGV
Sbjct: 91  DTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELIRSALAPLGDVQASDSNNNNDIGV 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL          + E+GM   GEI  L+    P IAVIT I  AH+        IASA
Sbjct: 151 PLTLLGAHRSHAAVVVEMGMRGAGEIERLSCCAEPEIAVITNIGTAHIGRLGSRAAIASA 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   L   G + +   D+  E   ++     I  +   G        +      +  
Sbjct: 211 KCEITAALSPRGVVVIPAGDALLEDALSRCWTGRILRVSLEGDEPEGGPDVSGLTSAALP 270

Query: 270 SWMEVQL-QGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +   V + Q +   +   G+       G H A+N ++ L + S L   + + ++A+ V  
Sbjct: 271 APDLVGVFQPEDQSLAFQGLRFRCPLEGRHNARNFMLALAVASELEVPLHS-LEAMDVAM 329

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  GR KR    L+ G  +L+DE+YNA+P ++ AA+ +L+    H  GRR AVLG M E+
Sbjct: 330 PG-GRNKR----LSMGGVSLLDETYNASPEAVLAALELLA----HQPGRRFAVLGTMLEL 380

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----------ALPRSIHVHYSETMD 431
           G  S   H  +A+         + L G  V+A  D          +L R   V   E   
Sbjct: 381 GSRSVELHRRVAQ-----RAVDLKLDGLVVVAGGDEGDVMEATACSLSRFTRVQTPEDA- 434

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              L ++  L  GD V++K+S      RLI +L
Sbjct: 435 --ALPLRGWLKPGDTVLLKASRGVALERLIPVL 465


>gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
 gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
          Length = 452

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 214/448 (47%), Gaps = 26/448 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I     F A+ G  +D HDF   AV+ GAG +     +V+ I    +P  
Sbjct: 24  IESVSTDTRAIDAGALFVALVGERFDAHDFAAQAVESGAGAL-----LVSRIVESDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L        +   +AITGS GKTT KEM+   +    +     G++NN 
Sbjct: 79  LVKDTKLALGQLGALVHQSCQTPTVAITGSAGKTTVKEMVASIMEQKGRVLFTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D+ + E+G +H+GEI + T+LV+  +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTPEDDYAVIEMGANHIGEIAYTTNLVKADVALVNNVAAAHLEGFGSLDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
             AK EI++GL+      +N D +  E   +    L  K +  F     +ADF   K   
Sbjct: 199 KQAKGEIYQGLKPGSVAIINLDSNGGEYWHS---VLADKLVKRFSVMDSDADF-FAKDIS 254

Query: 266 CSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +     E  L     +V +  GI G H   N L    +   L A+++     L+     
Sbjct: 255 LNSSGEAEFTLVSPVGDVAIKLGIVGQHNVANALAATALALELGANLEMVQSGLAQLSKV 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +     LN     LID+SYNA+  +MKAA  +L+  +    G R  +LG+M E+G+
Sbjct: 315 KGRVEVIE--LND-TIKLIDDSYNASVPAMKAAADLLASFT----GIRWLILGNMAELGD 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV- 442
            S + H  + E  + +   HV   G    A+ D       +H+S +   +  +I+  L  
Sbjct: 368 ESLALHRQVGEHAAPFKFEHVLTYGADAKAISDECGG---IHFS-SHQSMIDYIKQHLAQ 423

Query: 443 --DGDVVVVKSSNSCGFYRLINLLLEEF 468
             +   ++VK +NS G  ++   + E +
Sbjct: 424 HQEQQTLLVKGANSAGMSKVATAVKEMY 451


>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 456

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 217/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 7   LNLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKG 66

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 67  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 126 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  + +
Sbjct: 186 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGSLPSAEYKI 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 246 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L+     E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 301 AKELGVSFEEMKRGLNNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 357 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 413

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 414 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 456


>gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 138/461 (29%), Positives = 214/461 (46%), Gaps = 32/461 (6%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+  A  G  +  +P+ +V+ I+ D+R     + F A++GPH+DGH F          L+
Sbjct: 7   DIQCATGGEWLHGMPE-WVSEIATDTRGFKSGQCFLALRGPHFDGHRFAAPIADAACALI 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLT 127
                M     SL +P   V+D L AL  +A A R++ K  T++AI+GS GKT+ + +L 
Sbjct: 66  GDARGM-RYWESLPVPQLQVEDTLRALGDIAHAWRMQLKQTTVVAISGSFGKTSLRSLLQ 124

Query: 128 IALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              S++     A   + NN IGVP TL  +P D    + E G+S +GE+  L+ +V+P +
Sbjct: 125 HGFSALGLHVSATTANLNNLIGVPKTLLAVPADATLALIECGISEVGEMERLSAIVQPDV 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIK 245
           AV+T I  AH     G+  +   KA +F  L  TG      +    +L +   S    + 
Sbjct: 185 AVLTGITNAHGEGLGGLAGVVEEKAALFSHL-NTGAWCALGEGVADQLGRHHISQPADLL 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +     S   D Q   +++  EQS +E+ L  +     H     H+A  ++M L    +
Sbjct: 244 DVEQSELSWRLDGQCLHFQRGDEQSQIELSLPAR-----HWATNMHLAACIIMRL----M 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A ++   +AL+ +    G   R +     G   ++D+SYNANP SM+AAI  L  +  
Sbjct: 295 PEARLNDVAQALASWQAPAG---RMQVRTGSGGCKVLDDSYNANPVSMQAAIDTLVAMP- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIH 423
              G RIAVLGDM E+GE S   H      L +  I  ++L G   H LA      R   
Sbjct: 351 ---GCRIAVLGDMAELGEASLGAHTG----LDVSGIDKLYLVGPKMHALAAGSGTARWYP 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H +          + S      V+VK S S     ++N+L
Sbjct: 404 DHRAAAAS----LSRESFGPDATVLVKGSRSMALETVVNVL 440


>gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
 gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
          Length = 452

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 184/379 (48%), Gaps = 16/379 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  IDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGALLVSRKL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    L     T    G+ NN 
Sbjct: 79  VVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  +  + + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQ 265
           A AK EIF GL   G   LN D++  + L  +S  +G + ++ F  +   +DF       
Sbjct: 199 AKAKGEIFSGLPANGIAILNADNN--DWLNWQS-VIGDRKVWRFSPNLATSDFSATNIHI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   ++     ++V+    G H   N L    +   + A +      L+      G
Sbjct: 256 TSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASALAMAVGAPLQAIKAGLAKLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R      A NQ    L+D+SYNAN  SM AA  VLS++     G R+ V+GDM E+G+ +
Sbjct: 316 RLFPVHLAENQ---LLLDDSYNANVGSMTAAAQVLSEMP----GYRVMVVGDMAELGDEA 368

Query: 386 QSFHIDLAEVLSLYNISHV 404
           ++ H  + E      I  V
Sbjct: 369 EACHQQVGEAAKAAGIDKV 387


>gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
 gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
          Length = 466

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 212/440 (48%), Gaps = 33/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+++G    V++    A  G++      VD
Sbjct: 55  VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGTIL-----VD 109

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L AL +LA   R + K  +I ITG+ GKTTTKE+++  LS    T    G++NNHIGV
Sbjct: 110 NCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNNHIGV 169

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ L H+  P   +IT +  AHL  F   E +   
Sbjct: 170 PLTLLRLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNVGKAHLQGFGSFEGVIRT 229

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L   G  TIF+  ++ +   +     A G+ T   +G++    +   +   CS
Sbjct: 230 KGELYDFLRAKGGATIFIQNENPYLNGI-----AEGL-TCVRYGQTAGL-YVSGELISCS 282

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                    +G S EV  H IG +   NML    I        D    AL+ + P   R 
Sbjct: 283 PFLSFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDDISSALASYLPHNNRS 342

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386
           +    A N+    LI ++YNANP SM AA+    QI +PH    ++ +LGDM E+GE S+
Sbjct: 343 QLKETADNK----LIVDAYNANPTSMMAALKNFRQIEAPH----KMVILGDMKELGEASR 394

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + + L       V L G    A   +     HV      D +   I+     G  
Sbjct: 395 EEHQKVVDYLKECGFDRVVLVGPEFAAATHSYQTFQHV------DEVLADIRMHKPQGYY 448

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           +++K SNS      ++LLLE
Sbjct: 449 ILIKGSNSMK----LSLLLE 464


>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
 gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
          Length = 482

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 207/455 (45%), Gaps = 21/455 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +GA  V+V+    A +    
Sbjct: 26  PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSG 85

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139
           + V  V D   AL +LA   R +    ++A+TGS GKTT KEM++   +         A 
Sbjct: 86  VAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFACAVGEDARLAT 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I      H   
Sbjct: 146 AGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLATIAQPTVALINNAQREHQEF 205

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255
              +E +A+  A +   L   G      D +    +  L +A   A G + +  FG    
Sbjct: 206 MVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLDFGIEGG 262

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A          ++   ++VQ  G         +G H A+N L             +   +
Sbjct: 263 AVSA--TVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAATACALAAGIAPEVIAQ 320

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           ALS F P +GR +R +  ++ G   ++D++YNANP S++AAI  L+ +       R  VL
Sbjct: 321 ALSAFAPVKGRLQR-KPGVHGGL--VVDDTYNANPDSVRAAIDALATLP----APRWLVL 373

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G    +FH ++        I  V  +G     + DA       H++ + + L  
Sbjct: 374 GDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGGGAR-HFA-SAEALIE 431

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               ++  G  V+VK S      R+++ L+ + PA
Sbjct: 432 QGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
 gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 218/471 (46%), Gaps = 33/471 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q ++G  I         GIS DSR + P   F A+KG ++D H F+     K  
Sbjct: 4   TLSQIRQWVRGSRI--TADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V  + V    +  +P   V D   A+ ++A   R R    ++ +TGS GKTT KEM
Sbjct: 62  AAVLV--ERVPE--NYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEM 117

Query: 126 LTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +     +   +   A  G++NN +GVPLT+ R+       + ELGM+H+GE+ +L  + +
Sbjct: 118 IASIFRTAWGENCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++      H      +E +A     +   L + G      DD++  L     +A G
Sbjct: 178 PTVGLVNNAQREHQEFMQSVEAVARENGTVIRMLPENGIAVFPADDAYSSLWAG--YAGG 235

Query: 244 IKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +T+ +FG SK+AD    +++ K K     + + + L G+ +E+     G H  +N +  
Sbjct: 236 RQTM-TFGFSKDADVSAAYRIEKGK-----TRLVMSLAGEQVEMSLSTSGRHNVRNAMAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                          + L  F P  GR +R + A N     LID++YNANP S++AAI V
Sbjct: 290 AACCLAAGIGKLEIAEGLEKFVPVRGRLER-KTAFNGAL--LIDDTYNANPDSVRAAIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +   G    I VLGDM E+GE  + FH ++        I+H +  G       +A  
Sbjct: 347 LADMPSDG----IFVLGDMGEVGEEGERFHAEVGAYARERRINHFFTFGEMARFASEAYG 402

Query: 420 RSI-HVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
           +   H    E M+G+      +LV  D+ ++VK S      R++  L+ + 
Sbjct: 403 KEARHFMDLEEMNGVL----KALVKPDMAILVKGSRFMRMERVVEQLMNDM 449


>gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 457

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 216/475 (45%), Gaps = 37/475 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +   D+L  I+    G +       I IDSR+    + F AIKG ++DGH+F+   + K
Sbjct: 5   FFEIKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   VV+   M   +   + P + V D L A  KL +  R +    ++AITGSVGKTTTK
Sbjct: 65  GVKSVVIKEGMQKLLPD-NFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L+ + K      ++NN IGV LT+     +    + E+GM  LG+I  L+   +
Sbjct: 124 EMVGEVLNKLGKIKLSHANFNNEIGVGLTILATDKEDKVLVLEMGMRGLGQIENLSKYSK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-----SFFELLKAK 238
           P IAVIT I  AH+      + I  AK EI + L   G + +  +D     +  E  K +
Sbjct: 184 PDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              + +  I +   S   D  LR +   S ++   + ++    E+     G+H A N L+
Sbjct: 244 VTKVELLNIENQNDSFKKDNNLRGFYNPSNKT---ILIEENIFEISFE--GFHNASNFLL 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L  D ++  K    F    GR K  +        T+ DESYNA+P S+KA I 
Sbjct: 299 AYAVAKELGIDFESFNKF--DFVSLGGRNKILKSVKT----TIYDESYNASPESVKACIK 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +  P     +  + G M E+GE S+ FH    E+ +L N S +       L + D  
Sbjct: 353 TLLE-KPR---NKFFIFGSMQELGEESEKFH---KEIFNLINNSDIE----KCLFICDKK 401

Query: 419 PRSIHVHYSETMDGLFLF---------IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + I+ +Y +      +          I  S   GD +++K S S    ++I L+
Sbjct: 402 NKKIYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRSWQLEKIIELI 456


>gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 220/476 (46%), Gaps = 38/476 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L       E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPAAPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELGITDLVERKDSLTFKVNFLE---QALDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP +MK  +   
Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +
Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399

Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 483

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 60/465 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84
           DSR ++  + F A+ G + DGH F+    ++G  + +V+ D         A+   L  + 
Sbjct: 31  DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRAEILNQGWATAEELDQLT 90

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134
           V  V D   AL +LA A   +LR++A         +I ITGS GKTTTK++    LS+  
Sbjct: 91  VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 150

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T A + S+NN +G+PLT+    V  ++ + E+G S  G+I +LT +    +A++  +  
Sbjct: 151 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 210

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL ++S +E +A+ KA I E L  +G   LN DD   E +  ++     + +Y F   K
Sbjct: 211 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 266

Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301
           N      D +L +  + S      +    VQLQ   +   HH      A  +    G   
Sbjct: 267 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNALAAAAIAHVAGMTP 323

Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I ++L+     +   +++ H  +G               LID++YNANP S++AA+ V
Sbjct: 324 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 370

Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415
              I+  G  RR+  VLGDM E+GE S   H ++    +   IS +   G    H+ +  
Sbjct: 371 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 427

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            AL R    H           +Q  +  GD+++VK S+  G ++L
Sbjct: 428 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKL 472


>gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 483

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 60/465 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84
           DSR ++  + F A+ G + DGH F+    ++G  + +V+ D         A+   L  + 
Sbjct: 31  DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRAEILNQGWATAEELDQLT 90

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134
           V  V D   AL +LA A   +LR++A         +I ITGS GKTTTK++    LS+  
Sbjct: 91  VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 150

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T A + S+NN +G+PLT+    V  ++ + E+G S  G+I +LT +    +A++  +  
Sbjct: 151 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 210

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL ++S +E +A+ KA I E L  +G   LN DD   E +  ++     + +Y F   K
Sbjct: 211 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 266

Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301
           N      D +L +  + S      +    VQLQ   +   HH      A  +    G   
Sbjct: 267 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNAVAAAAIAHVAGMTP 323

Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I ++L+     +   +++ H  +G               LID++YNANP S++AA+ V
Sbjct: 324 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 370

Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415
              I+  G  RR+  VLGDM E+GE S   H ++    +   IS +   G    H+ +  
Sbjct: 371 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 427

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            AL R    H           +Q  +  GD+++VK S+  G ++L
Sbjct: 428 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKL 472


>gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
          Length = 480

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 60/465 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84
           DSR ++  + F A+ G + DGH F+    ++G  + +V+ D         A+   L  + 
Sbjct: 28  DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRTEILNQGWATAEELDQLT 87

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134
           V  V D   AL +LA A   +LR++A         +I ITGS GKTTTK++    LS+  
Sbjct: 88  VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 147

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T A + S+NN +G+PLT+    V  ++ + E+G S  G+I +LT +    +A++  +  
Sbjct: 148 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 207

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL ++S +E +A+ KA I E L  +G   LN DD   E +  ++     + +Y F   K
Sbjct: 208 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 263

Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301
           N      D +L +  + S      +    VQLQ   +   HH      A  +    G   
Sbjct: 264 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNAVAAAAIAHVAGMTP 320

Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I ++L+     +   +++ H  +G               LID++YNANP S++AA+ V
Sbjct: 321 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 367

Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415
              I+  G  RR+  VLGDM E+GE S   H ++    +   IS +   G    H+ +  
Sbjct: 368 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 424

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            AL R    H           +Q  +  GD+++VK S+  G ++L
Sbjct: 425 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKL 469


>gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
 gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
          Length = 457

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 217/471 (46%), Gaps = 32/471 (6%)

Query: 8   HDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + GA 
Sbjct: 6   HEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFIETAFENGAA 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK+ML
Sbjct: 65  VTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDML 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P  
Sbjct: 119 AHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPKT 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         K 
Sbjct: 179 AIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPVVEDYLPTD------KK 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  FG+   A+ ++    +  +    +     +++++   G  Y+    M+ +   V++ 
Sbjct: 233 VVRFGQG--AELEITDLVERKDSLTFKANFLNQALDLPVTG-KYNATNAMIASY--VALQ 287

Query: 307 TADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +  I+  +  H +  R +  ++ A N     ++ + YNANP +MK  +   S I  
Sbjct: 288 EGVSEEQIRQ-AFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
           +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +     
Sbjct: 345 NEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIG 404

Query: 423 HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 405 HVYYFKKTEDRDQFEDLVKQVKESLGTNDQILLKGSNSMNLAKLVESLENE 455


>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 168/367 (45%), Gaps = 17/367 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ + IDSR       F AI+G   DGH FI   +++GA   V   D+    G +     
Sbjct: 28  VSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGALCAVSEEDL----GDVPYSYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  +A   R      ++ I+GSVGKT+TKEM+   LS         G++NN 
Sbjct: 84  KVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTSTKEMIASVLSQKYSVLKTEGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G+S   E+  L  + RP I V+T I  AH+ N    + I
Sbjct: 144 IGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+F  + + GTI LN DD   + L+  S   GI  +Y FG  ++  F        
Sbjct: 204 LKAKTEMFAYMNENGTIILNGDD---DKLRGYSPENGITPVY-FGLDESCGFHAENISGK 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                        S    H  I G HM  N L    +   L          +    P  G
Sbjct: 260 GLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAG 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R       FT+ID+ YNANP SMKA++ VL+      + R+ A+LGDM E+GE  
Sbjct: 320 RNNLIRAP----HFTIIDDCYNANPTSMKASLDVLA----FADTRKAAILGDMFELGENE 371

Query: 386 QSFHIDL 392
           +  H ++
Sbjct: 372 KQMHREV 378


>gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1059]
          Length = 456

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 214/442 (48%), Gaps = 31/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +  ++   + G+  +    VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLTTTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++       
Sbjct: 205 IADGLRKDGLLIVPADKIINEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++V  A +A S       R + ++ 
Sbjct: 257 ECNFLEERIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442
              L+   ++ ++L G  + AL D   + I+    V Y       +  + L   ++  L 
Sbjct: 372 ITSLNPEIVTDLFLYGQDIEALYD-YAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLT 430

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             D V++K SNS    +L+  L
Sbjct: 431 PADQVLLKGSNSMNLAKLVEDL 452


>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
 gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 8102]
          Length = 449

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 203/447 (45%), Gaps = 27/447 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V  I  DSR +     F  + G  +DGH F+      G    VV+ D  A + S  
Sbjct: 22  PDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVSLDWTAPLPS-G 80

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  + VDD L A  +LA+  R +    ++A+TGS GKTTT+E++   L+ +    A  G+
Sbjct: 81  LLHWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQASDGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN IGVPLT+     D    + E+GM   GEI  L+    P +AVIT I  AH+     
Sbjct: 141 NNNDIGVPLTVLGAGSDHAALVIEMGMRGPGEIARLSRCTEPDVAVITNIGTAHIGRLGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADF--Q 259
            E IA+AK EI   L   G + +   D   E  L A      ++          AD    
Sbjct: 201 REAIATAKCEITAALHPQGVVVIPAGDPLLEQALAAVWQGRVLRVRLEDDPDITADLIGA 260

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            R  +   +++ + + L G+           H A+N+L+ L + S L  D  +A + L V
Sbjct: 261 ARNDRLLLDEASIPLPLDGR-----------HNARNLLLALAVGSHLGVDPASAAQ-LQV 308

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  GR +R    L QG  TL+DE+YNA+P     A   L    P   GRR AVLG M 
Sbjct: 309 NIPG-GRNRR----LQQGGLTLLDETYNASP-EAVLAALDLLADQP---GRRFAVLGTML 359

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           E+G+ S   H  +A   +   +  V L   G    A+ + +     +    T +   + +
Sbjct: 360 ELGDRSIELHQQVAARAAALKLDGVVLVDGGDEGQAMANVVSCLDRLALVATPEAAAVPL 419

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
              L  GDVV++K+S      RLI LL
Sbjct: 420 GQWLQAGDVVLLKASRGVALERLIPLL 446


>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
 gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
          Length = 483

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 168/367 (45%), Gaps = 17/367 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ + IDSR       F AI+G   DGH FI   +++GA   V   D+    G +     
Sbjct: 38  VSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGALCAVSEEDL----GDVPYSYI 93

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  +A   R      ++ I+GSVGKT+TKEM+   LS         G++NN 
Sbjct: 94  KVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTSTKEMIASVLSQKYSVLKTEGNFNNE 153

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G+S   E+  L  + RP I V+T I  AH+ N    + I
Sbjct: 154 IGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGI 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+F  + + GTI LN DD   + L+  S   GI  +Y FG  ++  F        
Sbjct: 214 LKAKTEMFAYMNENGTIILNGDD---DKLRGYSPENGITPVY-FGLDESCGFHAENISGK 269

Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                        S    H  I G HM  N L    +   L          +    P  G
Sbjct: 270 GLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAG 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R       FT+ID+ YNANP SMKA++ VL+      + R+ A+LGDM E+GE  
Sbjct: 330 RNNLIRAP----HFTIIDDCYNANPTSMKASLDVLA----FADTRKAAILGDMFELGENE 381

Query: 386 QSFHIDL 392
           +  H ++
Sbjct: 382 KQMHREV 388


>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
 gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
          Length = 452

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 217/444 (48%), Gaps = 34/444 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +S D+R+I     F A+ G  +D H F   AV  GAG ++V+  +     S  +P  
Sbjct: 24  INSVSTDTRNIEQGALFVALVGERFDAHHFTHQAVDSGAGALLVSKPV-----SGDVPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L            +AITGS GKTT KEM+   +    +     G++NN 
Sbjct: 79  VVKDTKLALGQLGALVHQTCLTPTVAITGSCGKTTVKEMIASIMEQKGQVLFTAGNFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R   + D  + ELG +H+GEI + T LV+P +A++  +A AHL  F  ++ +
Sbjct: 139 IGVPLTLLRSTPEDDVAVIELGANHIGEIAYTTRLVQPDVALVNNVAAAHLEGFGSMDGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
             AK EI++GL+      +N D    D + E+L  K     +KT +S   S +ADF    
Sbjct: 199 KQAKGEIYQGLKAGSVAIVNLDSNGGDYWQEVLADKL----VKT-FSLTDS-SADFTASD 252

Query: 262 -KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               +  E S++    QG+ ++V    IG H   N L    +   L A ++     L+  
Sbjct: 253 ISLNEIGEASFVLKTPQGE-IKVTLGIIGQHNVANALAATALALELGASLEMIQSGLASL 311

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +  +GR +     LNQ    LID+SYNA+  +MKAA  +L+      +G R  +LG+M E
Sbjct: 312 NKVKGRVELIE--LNQQ-IKLIDDSYNASVPAMKAAADLLAGF----KGVRWLILGNMAE 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439
           +G+ S + H  + +  + +   +V   G    A+ +    R    H S     +  FI+ 
Sbjct: 365 LGDESLALHRQVGQHAAPFKFEYVLTFGADAKAISEECGGRHFEDHQS-----MIDFIKQ 419

Query: 440 SL---VDGDVVVVKSSNSCGFYRL 460
            +   ++   ++VK +NS G  ++
Sbjct: 420 QIEQHLEPQTLLVKGANSAGMSKV 443


>gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 484

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 217/474 (45%), Gaps = 34/474 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+   + + +    ++     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 31  TIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 89

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 90  ATVTLSEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTKD 143

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 144 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 203

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 204 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIEDYLPTD------ 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           K +  FG    A+ ++    +  +    +    G+++++   G  Y+    M+   +G+ 
Sbjct: 258 KKVVRFGSG--AELEVTDLIERKDSLTFKANFLGQALDLPVTG-KYNATNAMIAAYVGLQ 314

Query: 304 SILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ + +  A + L +   +      ++ A N     ++ + YNANP +MK  +   S 
Sbjct: 315 EGVSEEQIRQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFSA 368

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I  +  G++IAVL DM E+G  S   H  +   LS   +  +   G  +  L     +  
Sbjct: 369 IPANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLDTIIFYGEDIAELAQLASQMF 428

Query: 423 ---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 429 PIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 482


>gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1005

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 225/473 (47%), Gaps = 29/473 (6%)

Query: 9   DLLQAIQGHSIGIVP----QGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++++A +GH   + P    Q  V+ +  IDSR +   E F A+KG + DGH FI    +K
Sbjct: 537 EVVEAGRGHGDSLPPSQPPQEMVSPVVVIDSREVRGGELFIALKGENADGHCFIGTVFEK 596

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA   +V+       GS+  P        DD +  L +LA   R +    ++AI GS GK
Sbjct: 597 GASWAMVSRQWYEEQGSVDPPPGKGFIVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGK 656

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   L +  + +   G+ NNH+GVPLTL ++  D D  + E+G++H GE+  L 
Sbjct: 657 TTTKEMVASVLGTGFRVHMSEGNRNNHLGVPLTLLQLRGDTDIAVVEMGINHPGEMVLLA 716

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAK 238
            +  P  A++T I   HL     ++ + +A+  +F+ L ++G I F+N DD      +  
Sbjct: 717 AIGSPTHALLTNIGHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDP-----RIS 771

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQ------CSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + A G+     +G +  ++     W +          S++   + G S  V  +  G H 
Sbjct: 772 AAASGMAGSVPYGMATRSEHSC--WARDISVNSAGALSFLLCSIAG-SEPVTLNFTGKHN 828

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N +    +       +    + L    P  G  KR    L+     +++++YNAN  S
Sbjct: 829 VMNAIAAATVGHYFGLSLCQIREGLERLTPAPGW-KRLEV-LDACGVRILNDTYNANSDS 886

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+ AI  L  +   G G+R+AVLGDM E+G   +  H  +   L   ++  ++  G    
Sbjct: 887 MRKAIDALCDLP--GAGKRVAVLGDMLELGLAGEVEHQAIGNYLQQSSVDLLFTFGESAR 944

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               A+P     H+ E+ + L   +++ L +GD+V+ K S      ++++ L+
Sbjct: 945 LFGRAVPERYRGHF-ESREALLEALRTVLQEGDIVLFKGSRGMKLEQVVDALI 996



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 153/364 (42%), Gaps = 40/364 (10%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G ++ ++ DSR + P   F AIKG   DG  FI  AV++GA  V+   +   S  +L   
Sbjct: 35  GAISMVTSDSREVLPGSLFVAIKGYATDGGRFIRSAVERGAAAVIC--EEFPSDPALPCL 92

Query: 85  VFGVDDVLGALNKLAVAARL-RSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              V D   A   LA AAR+   KA+    II +TG+ GKTTT +++T  L++   +   
Sbjct: 93  YIKVAD---ARKALAEAARIFYGKASDQLLIIGVTGTNGKTTTAKLITAMLNANGISAGY 149

Query: 140 IGSYNNHIG---VPL-----------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           IG+    IG   +PL            L R  ++       + +S    +    + +R H
Sbjct: 150 IGTNMCRIGELEIPLDRTTPEAHGLHALFRQMLEAGCKAAVMEVSSHALVLQRVYGIRFH 209

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK------- 238
            A+ T +   HL     + + A AK ++F+ L   G   LN DD + E + A+       
Sbjct: 210 AALFTNLTQEHLDFHETMHDYAEAKQQLFDQLSPDGFAVLNIDDPYAEQMAARVADDKIY 269

Query: 239 --SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +   G++   S  +   AD      +     S + +    +S+E+     G     N+
Sbjct: 270 CCTMQRGLQPALSCSRLFAADL----LQGTLASSTIVLHFPDESVEMQVKLPGNFNVMNV 325

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    I + +         ALS     EGR +R   +  QG+   +D  Y   P ++  A
Sbjct: 326 LEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGES-RQGWMAFVD--YAHTPDALFKA 382

Query: 357 ISVL 360
           +  L
Sbjct: 383 LDAL 386


>gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC
           334]
 gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei ATCC 334]
          Length = 462

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 213/452 (47%), Gaps = 33/452 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F  ++G   DGH+FI  A   GA    V  D +     L   V 
Sbjct: 26  VTGLAFDSRKLKPGMLFVPLRG-ERDGHEFIPAAATAGAVATFVAADHLPVTTKLITLV- 83

Query: 87  GVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V D L A+ +LA    L +    ++AITGS GKTTTK+M    L++         +YNN
Sbjct: 84  -VPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNN 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   ++
Sbjct: 143 EIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDK 202

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGI---KTIYSFGKSKNADF 258
           IA AK EI +GL+  GT   N D+   +    K        G+    TI++   S +   
Sbjct: 203 IADAKMEITDGLKDDGTFIFNGDEPLLQERAKKITQERETFGLHPENTIFAHSISGH--- 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R   + + ++W ++      M       G +   N L  L +        +   KAL+
Sbjct: 260 --RNHTEFTVEAWPDLTFSIPIM-------GEYNVVNALAALLVGRKFHVKPEIMQKALA 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R +     + +    ++ + YNANP +MKA I   S+ +    GR IAVLGDM
Sbjct: 311 HFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFT--ATGRHIAVLGDM 365

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGL 433
            E+GE S + H  LAE L    +  V+L G  + AL D L        +H +  +  + +
Sbjct: 366 LELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADTLAAKYPADQLHYYPLDDKEQM 425

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +Q+ +   D+V++K+S+      +++ L+
Sbjct: 426 TRDLQNDVNHDDMVLLKASHGLHLETVLSALV 457


>gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
 gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
          Length = 451

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 213/443 (48%), Gaps = 34/443 (7%)

Query: 30  ISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---- 84
           IS DSR S    + F AIKG  +DG+ F L    KG    ++      S  ++++P    
Sbjct: 35  ISTDSRDSFDSTKLFLAIKGDKFDGNKFALETYNKGCRYFIL------SDQTINMPDNAK 88

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           VF  DD +    KLA   R R    II++TGS GKTTTKE+  + LS+  K     G++N
Sbjct: 89  VFYTDDTILFFIKLAREYRRRFNIPIISVTGSCGKTTTKELTHLFLSTKYKALKTEGNFN 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP T+  +    +  + E GM+H  E+  ++  +  +  +I  + P H+++   IE
Sbjct: 149 NEIGVPKTMFNLDTSYEIAVIEAGMNHKNELLRISECIEANTVIINNVEPVHIAHLGSIE 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AKAE+F   ++     +N + +  ++LK ++    IK I        AD  +++  
Sbjct: 209 NIAYAKAELFNHTKENANAVINKNTNCADILKKEAKRNNIKNIIE------AD--IKEIV 260

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +  + S+     + K +   H+ +G     N+L  L    I   D+      L  +  ++
Sbjct: 261 KKDDNSF-----EYKGIIFNHNLVGDFNLYNVLSALKAAEIYNIDLKKCADILLNYQSQK 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +     +N     +I++ YN+NPA++K  +  LSQ     E ++IAV+GDM E    
Sbjct: 316 NRMQ----IINIKGCNIINDCYNSNPAALKNMLKYLSQ---RNESKKIAVIGDMLETETE 368

Query: 385 SQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + S+H ++   ++ L NI  V   G H   + + +  +   +Y E        ++  L D
Sbjct: 369 NSSYHKEIGNNINELKNIDTVIAVGEHSKDIYNIV--NCEKYYFENAQSAIEKVKDFLKD 426

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
              +++K+S   GF  +I+ + E
Sbjct: 427 NTAMLIKASLGMGFAVIIDSIKE 449


>gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 471

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 205/442 (46%), Gaps = 14/442 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           + IDSR +   E F A+KG   DGH ++ +  Q+GA  V+V+ +     GS   P     
Sbjct: 31  VVIDSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGF 90

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD +  L +LA   R      ++AI GS GKTTTKEM+   L++        G+ NN
Sbjct: 91  IVTDDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASVLATGFTVQMSQGNRNN 150

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++  D    + E+G++H GE+  LT + RP   ++T I   HL     ++ 
Sbjct: 151 HLGVPLTLLQLRPDTGIAVVEVGINHPGEMEELTAIARPTHGLLTNIGHEHLEFLIDLDG 210

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +A+A+ ++F  L+++ GT F+N DDS    L+A   AL    IY          + R   
Sbjct: 211 VAAAETQLFTYLQESGGTAFVNGDDS---RLRAAGEALEGPVIYGTADLPGRICRARDIS 267

Query: 265 QCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            C +     V       E V  +  G H   N +    +       +    + L    P 
Sbjct: 268 VCRDGRISFVLCSADRTEPVTLNFTGKHNVINAVAAAAVGLHFGLPLSRIREGLESLVPA 327

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G  KR    ++ G   +++++YNAN  SM+ AI  L  +    EG+RIAVLGDM E+G 
Sbjct: 328 PGW-KRLE-VMDSGGLRILNDTYNANSDSMRLAIDALCDLPC--EGKRIAVLGDMLELGA 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                H  +   +    +  +++ G     +    P S   H+S T + L   +   + D
Sbjct: 384 AGDVEHESIGRYIHGSRVDLLYVYGEKARLICRESPGSCQGHFS-THEELLEALLEGVHD 442

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
           GD ++ K S      R++  L+
Sbjct: 443 GDAILFKGSRGMKLERVVESLI 464


>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 452

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 213/464 (45%), Gaps = 23/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A  G S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATAGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    V++ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVE----GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KTI ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 236 KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F    G   R      +    L D +YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420
                R+IA+LGDM E+G+ S+  H ++ ++L+    S V+  G    F     K A   
Sbjct: 351 GK---RKIAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +    M   +  I+     GDV++VK S      R++  L
Sbjct: 408 TFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448


>gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J1-208]
          Length = 418

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 205/434 (47%), Gaps = 31/434 (7%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F    G   DGH+F+  A + GA       D+         PV  V+D L AL +LA   
Sbjct: 3   FVPFVGNVRDGHEFVNQAREMGAVATFWQKDVPNP--PTDFPVILVEDTLLALQELAAKY 60

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
             + K  +IAITGS GKTTTK+++   + +  K +   G++NNHIG+P T+  MP D + 
Sbjct: 61  IQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEV 120

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEIA AK EI  GL  +G 
Sbjct: 121 AVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGI 180

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQ--CSEQSWMEVQLQ 277
           +   ++++         +  G     +FGKS+ A+    ++R   +  C   +W      
Sbjct: 181 LIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTCFITNWE----- 230

Query: 278 GKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +E+    IG H   N +  +     + I    + +A+K +      E    R     
Sbjct: 231 -PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ERSKSRLEWIT 283

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +    +++++YN++P ++K  +     +   G+ + + VL DM E+G+LS   H + AE
Sbjct: 284 TKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGDLSTKLHQESAE 342

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           VL    I  V+L G  + A  +     I    VH+ +T + L   + S +   + ++VK 
Sbjct: 343 VLESDTIEKVFLYGDAMKAFGEVAEAKIGQGKVHHFDTKESLETALLSEIKGNEWILVKG 402

Query: 452 SNSCGFYRLINLLL 465
           S   G   ++  L+
Sbjct: 403 SYGMGLKDVVENLI 416


>gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 464

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 188/387 (48%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +E+    +G H   N L    +   + A ++ A+KA 
Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLAMAVGAGLN-AVKA- 313

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            +    + +G+ Y   +NQ    LID++YNAN  SMK+A++VL          RI  +GD
Sbjct: 314 GLEQRSQVKGRLYPVEVNQHCL-LIDDTYNANVDSMKSAVAVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ S + H  +A+ +   N+  V
Sbjct: 369 MAELGDESAACHQQVADFVREANLDLV 395


>gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
 gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 198/407 (48%), Gaps = 31/407 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC 266
           K E++E L   G   IF++ D+   E L A S  L   T   +G + +   +   K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGREGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420
             H  +A+ L       V L+G               V+ALK++L R
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFKDVVALKESLER 407


>gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Photobacterium profundum SS9]
 gi|46914748|emb|CAG21525.1| hypothetical
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Photobacterium profundum SS9]
          Length = 468

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 190/392 (48%), Gaps = 51/392 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S D+R+++    F A+KG  +D HDF  +A+  G   ++V+  +      + +P  
Sbjct: 24  VANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMDNGVAALLVSRHL-----PVELPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D   AL  L    +   +       +A+TGS GKTT KEM+   LS      A  G+
Sbjct: 79  VVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGSCGKTTVKEMVAEILSQKGNVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+  + +F + ELG +H  EI + T+LV+P +A+I  +A AHL  F  
Sbjct: 139 FNNDIGVPLTLLRLTPEHEFAVIELGANHQQEIAYTTNLVKPQVALINNLAAAHLEGFGS 198

Query: 203 IEEIASAKAEIFEGLE--------KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           +  +A AK EIFEGL          T  I L+ +D    L     HA+   ++       
Sbjct: 199 LAGVAQAKGEIFEGLTAPLNGSGLSTAIINLDSNDVAMWLPFLAQHAVKTFSLTDI---- 254

Query: 255 NADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +ADF        SE ++   +     S ++     G H   N L    +   + A ++  
Sbjct: 255 SADFSATDIFINSEGRACFTMCTPEGSTDITLTLAGTHNVSNALAAAALAMAVGATLEQ- 313

Query: 314 IKA-----------LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +KA           + V HP+EG               LID++YNA+ AS+KAAI +L+ 
Sbjct: 314 VKAGLEQVVNVKGRVDVSHPREG-------------LRLIDDTYNASVASVKAAIDLLAS 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +    G+R  VLGDM E+GE S S H ++AE
Sbjct: 361 FT----GQRWFVLGDMAELGEDSASLHREVAE 388


>gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
 gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
          Length = 452

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 185/370 (50%), Gaps = 16/370 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF   A   GAG ++V+  +     +  +P  
Sbjct: 24  IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +    ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  +  + + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL + G   LN D++ +   +A    +G + ++ F   + N+DF     + 
Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    +++V+    G H   N L    +   + AD+      L+      G
Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R   +Q    L+D+SYNAN  SM AA+ VLS++     G R  V+GDM E+G  S
Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRAMVVGDMAELGAES 368

Query: 386 QSFHIDLAEV 395
            + H ++ EV
Sbjct: 369 AACHREVGEV 378


>gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 464

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 188/387 (48%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTAITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +E+    +G H   N L    +   + A ++ A+KA 
Sbjct: 256 FWAENVELGLSGSHFTLHSPQGEIEINLPYLGAHNVSNALAATSLAMAVGAGLN-AVKA- 313

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            +    + +G+ Y   +NQ    LID++YNAN  SMK+A++VL          RI  +GD
Sbjct: 314 GLEQRSQVKGRLYPVEVNQHCL-LIDDTYNANVDSMKSAVAVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ S + H  +A+ +   N+  V
Sbjct: 369 MAELGDESAACHQQVADFVREANLDLV 395


>gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Brevibacterium linens BL2]
          Length = 488

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 222/478 (46%), Gaps = 34/478 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++  A+ G   G+ P+  ++ G+  DSR + P + + A +G  +DG +F   AV+ GA L
Sbjct: 8   EIATAVSGELYGVDPETKLSAGVVTDSREVGPGDIYVARRGESFDGIEFAAAAVEAGAAL 67

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAITGSVGKTTTK 123
           ++   + V ++   ++P   V D   AL +LA     + R   + T+IAITGSVGKTT K
Sbjct: 68  II--GESVPTLDDATLPTVLVSDATEALGQLAKCNIESLREAGEITVIAITGSVGKTTVK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L+   +T     SYNN +GVPLT  R      F + E+G   +G + +LT LVR
Sbjct: 126 DLAADLLAGEDETVWPPNSYNNEVGVPLTALRAGETTRFLVLEMGARSIGNLAYLTSLVR 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239
           P IAV   +  AH   F  IE  A AKAE+ E L       LN DDS      E+L    
Sbjct: 186 PDIAVELAVGTAHSGVFGSIENTARAKAELVESLSAGSVAILNADDSRVAGMREVLSPDV 245

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVHHG-IGYHMAQ 294
             L      S  +   + D  +R     ++ S      + L G+  + V    IG H   
Sbjct: 246 STLWFSQRESLPEWVADEDSVVRGTGVTTDASGHATFSLNLPGEEPQDVRLALIGEHHVG 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352
           N L +  I       + + +  LS          R+R  L  +    T+++++YNANP S
Sbjct: 306 NALASAAIAHACGVGMKSIVTTLSTSSA----ASRWRMELIDSPSGVTVLNDAYNANPES 361

Query: 353 MKAAISVLSQISPHGEGRR----IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           M+A++  L+ +    E  R     AVLG+M E+GE S S H D+ E++   NI+   + G
Sbjct: 362 MRASLKTLASMGRGDEESRPRRTFAVLGEMLELGEESISAHSDIGELVVRLNITRTIVVG 421

Query: 409 ------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                 F+   L+ +        +  T       + + L  GD+V+ KSS   G   L
Sbjct: 422 DGAKPIFNAANLEGSWGN--EAAWVPTAAEAKDLLNAELAPGDIVLFKSSRDAGLRYL 477


>gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
 gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
          Length = 474

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 217/476 (45%), Gaps = 27/476 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++     G  +   PQ  V+ G+ IDSR       F A+ G H DGH ++  A + 
Sbjct: 4   MTADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRVAHEN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKA----TIIAITGSV 117
           GA   +V T +V   G  +  +  VDD   AL  LA  V AR R  A     ++ ITGSV
Sbjct: 64  GATTSLV-TRLVPDAGDGAQVL--VDDAQRALGDLARHVLARRREVADEPPVVVGITGSV 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L+ +   +A  GS NN +G+PLT+ R P D    + E+G    G + +
Sbjct: 121 GKTSTKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDARVVVAEMGADAPGNLTY 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT +  P +AV+ T+  AHL+ F  ++ +A+ K+E+  GL   G   LN DD      + 
Sbjct: 181 LTSIAPPDVAVVLTVGRAHLAGFGSVDAVAATKSELVSGLAPGGFAVLNADDE-----RV 235

Query: 238 KSHALGIKTIYSFGKS-----KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            + A     + +FG        +   +          +++     G+ + V    +G H 
Sbjct: 236 AAMARLAPRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTPDGEEVPVTLALVGEHH 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L        L   +  A  A ++ +       R          T++D++YNANP S
Sbjct: 296 VTNALAA--AAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDGVTVVDDAYNANPES 353

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++AA+  L  I+   E R +AVLG+M E+G+ S+  H  +  V    N+  + + G    
Sbjct: 354 VRAALKALVAIAGR-ERRSVAVLGEMLELGDSSRDEHDAVGRVAVRLNVDKLVVVGEGAR 412

Query: 413 ALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A+               ++  +D    ++ + L  GDVV+VKSS   G   L + L
Sbjct: 413 AMHTGASHEGSWGDEALFAPDLDAARAYLATELRPGDVVLVKSSKGAGLAALADEL 468


>gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           dadantii Ech703]
 gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech703]
          Length = 453

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 186/385 (48%), Gaps = 33/385 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R +     F A++G ++D HD+   AV  GAG +VV   +      + +P   V 
Sbjct: 27  VSTDTRKLTAGCLFVALRGENFDAHDYAADAVAGGAGALVVCKRL-----PIEVPQLVVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  LA   R +S A ++A+TGS GKT+ KEM    L          G++NN IGV
Sbjct: 82  DTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMTASILRQCGNVLYTAGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + DF + ELG +H+GEI + T LV+P  A++  IA AHL  F  +  +A A
Sbjct: 142 PLTLLRLAPEHDFAVIELGANHIGEIAYTTELVKPETALVNNIAAAHLEGFGSLAGVAQA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267
           K EIF+GL + G   +N D +     +    +L  KT++ F    + +ADF     +   
Sbjct: 202 KGEIFDGLPENGVGIINADSNDIARWQP---SLAGKTLWRFSSQPASSADFLASDVRAAD 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR- 326
             +   +      ++V     G H   N L    +   + A ++     LS      GR 
Sbjct: 259 LGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAISVGASLEAVKLGLSRLQAVPGRL 318

Query: 327 -------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                  GKR           L+D+SYNAN  SM AA  VL+++     G ++ V+GDM 
Sbjct: 319 FPILLAPGKR-----------LLDDSYNANVGSMTAAAQVLAEMP----GYQVMVVGDMA 363

Query: 380 EMGELSQSFHIDLAEVLSLYNISHV 404
           E+G+ +++ H  +     L  I  V
Sbjct: 364 ELGQEAEACHRQVGAAAKLAGIDKV 388


>gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
 gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 196/407 (48%), Gaps = 31/407 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+   E L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGGEGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420
             H  +A+ L       V L+G               V+ALK++L R
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFQDVVALKESLER 407


>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
          Length = 453

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
 gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
          Length = 432

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 196/407 (48%), Gaps = 31/407 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+   E L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGGEGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420
             H  +A+ L       V L+G               V+ALK++L R
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFKDVVALKESLER 407


>gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
 gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
          Length = 478

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/440 (30%), Positives = 197/440 (44%), Gaps = 29/440 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGSLSI 83
           I  DSR + P   F  + G  +DGH F+  A+++GA  V+   D +++      + S   
Sbjct: 28  IGTDSRELEPGCLFVPLVGERFDGHGFLAAALEQGALAVLAQRDRLSAEQAEALVRSSGG 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            ++ VDD   A  +L    R +  A +IA+TGS GKTTT+E++   LS +    A +G+ 
Sbjct: 88  RIWLVDDTQAAYQELGRLWRRQGSAPVIAVTGSAGKTTTRELIRAVLSPLGPVLASVGNE 147

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL +   +    + E+GM  LGEI  L+    P I VIT I  AH+      
Sbjct: 148 NNDIGVPLTLLKAGGEHRAVVVEMGMRGLGEIERLSRCAEPDITVITNIGTAHIGRLGSR 207

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNADFQ--- 259
           E IA+AK EI   L   G + +   D   E  L A      I+       +     Q   
Sbjct: 208 EAIATAKCEIVAALRPDGLVVIPAGDPLLEASLAAVWSGRVIRVALQDDPTGPQPGQLLG 267

Query: 260 -LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            LR         W   +   +         G H A+N+L+ L + S L  D    +  L 
Sbjct: 268 RLRAGTDGDRLIWGRAEPGAREHSTELPLPGRHNARNLLLALAVASELGVD-PLQLSRLE 326

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V  P  GR +R R     G   ++DE+YNA+P +M AA+ +L+       GRR A LG M
Sbjct: 327 VALPG-GRSRRIRL----GEIEVLDETYNASPEAMLAALDLLASQG----GRRFAALGTM 377

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGL 433
            E+GE S   H  + E      +  + +      G  +LA    LPR   V   E     
Sbjct: 378 LELGEQSTELHRRVGERARALGLDGLVIVAGGAEGEALLAGAAGLPRLQRVDSPEDAAQT 437

Query: 434 FLFIQSSLVDGDVVVVKSSN 453
            L     L  GD +++K+S 
Sbjct: 438 LL---GWLEPGDHLLLKASR 454


>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
 gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
          Length = 453

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 214/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    + +
Sbjct: 183 SPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPNAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLCFGDFSKNIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 453

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 216/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLVVCGNDDFLGALPSAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
 gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
          Length = 437

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 209/438 (47%), Gaps = 26/438 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GIS D+R++     F A++G +++G+ +   A+  GA  V+V+   + ++G+ SI V   
Sbjct: 20  GISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDPKLKNLGANSIVV--- 76

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L +LA   R +    II ITGS GKTTTKE++   LS   K  A  G+ NNHIG
Sbjct: 77  EDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNLNNHIG 136

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  +    I E+G +HL EI+ L  +  P+   IT    AHL  F G++ +  
Sbjct: 137 VPLTLLELTKEHQIAIIEMGANHLDEIKNLCCISLPNWGYITNFGKAHLEGFGGVDGVIK 196

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E++  L E+   I +N DD   ++ + K++      + SFG  K   FQ+      +
Sbjct: 197 GKSELYNHLIEQQQKILINGDDP-LQIKQTKNYP-----VSSFGHGKENTFQI-----ST 245

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +   E+QL         +  G +   N+   +    I      +  KA+  +     R 
Sbjct: 246 NEKDDELQLTYNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPTKSIQKAIQKYQATNNRS 305

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           ++ +        ++I ++YNANP SM+ AI    +I+     + + ++GDM E+G  S+ 
Sbjct: 306 QKIKIKNT----SIILDAYNANPTSMEHAIKAFKKIATQ---KSVLIMGDMKELGVESEK 358

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDV 446
            H  + +         + L G      KD    +  V   + ++    FI + S +D D 
Sbjct: 359 EHQQIVDYCLEMKFEQIDLIGPLFSKTKDV---ADMVRKHKNLNSFTNFINAQSQLDFDH 415

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S S     L+ L 
Sbjct: 416 IMIKGSRSMKLETLLPLF 433


>gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 464

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 183/387 (47%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +E+    +G H   N L    +   + AD+      L
Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 + +G+ Y   +N      ID++YNAN  SMK+A+SVL          RI  +GD
Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ S++ H  +A+ +   N+  V
Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395


>gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
 gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
          Length = 503

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 190/374 (50%), Gaps = 24/374 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  V+V+  + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             VD+   AL ++A A   R +AT ++A+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VVVDNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256
              +  +A  K  I+  L   G   +N DD+F   FE  + +S  +  + +  +G   +A
Sbjct: 198 LGSLLGVARTKGAIYAALPADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGLQASA 256

Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +   R+ +       +  V  QG++  +     G H   N L   G+   L A +   + 
Sbjct: 257 EITARQLRLHTGGAQFTLVTPQGEA-PIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A  +   +   G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VL
Sbjct: 314 ADGLAQARAVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368

Query: 376 GDMCEMGELSQSFH 389
           GDM E+G    + H
Sbjct: 369 GDMRELGAEGVALH 382


>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
 gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
          Length = 444

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 23/424 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R I     FFA+KG  ++G+ F   A+ KGA +VVV  D   ++    I +  V 
Sbjct: 31  VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVV--DEPQNLQDDRIIL--VK 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L +L  LA A R   +  +I +TGS GKTT+KE++   L    + +   G+ NNHIGV
Sbjct: 87  NGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNNHIGV 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +P +    + E+G +HL EI  L+ + +P +  +T    AHL  F G E +   
Sbjct: 147 PLTLLSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNFGHAHLEGFGGFEGVVKG 206

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  L E   T+ +N DD   +L +AK+    +++  SF  SKN   Q     +  E
Sbjct: 207 KSELYNFLHEHHKTVLINADDP-LQLQQAKA----VESQISF--SKNESTQATYCIELKE 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               ++Q+  + + +  +  G +   N+   +                +  ++P   R +
Sbjct: 260 NVNNKIQVVVEDVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEIKNGIENYYPANHRSQ 319

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                + +  +TL+ ++YNANP+SM+A+++  S      +G +  +LGDM E+GE S+  
Sbjct: 320 ----LIQKDKYTLLMDAYNANPSSMEASLNNFSTF----DGSKTVILGDMFELGESSKVN 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +A++        ++L G +   ++        + + E  D L  +++   ++   ++
Sbjct: 372 HQKIAQLTKDLGFEKIYLVGNNFSKIEGDFS---DIQFFEDRDSLVNYLKKHPIETKNIL 428

Query: 449 VKSS 452
           +K S
Sbjct: 429 IKGS 432


>gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 464

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 183/387 (47%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +E+    +G H   N L    +   + AD+      L
Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 + +G+ Y   +N      ID++YNAN  SMK+A+SVL          RI  +GD
Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ S++ H  +A+ +   N+  V
Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395


>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
 gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
          Length = 453

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 218/467 (46%), Gaps = 21/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+IR L  + 
Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIRELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N +   +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L+     E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLNNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVIKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +++ +  E ++ L   I     +GD+++VK+S S  F  +   LLE+
Sbjct: 411 TVYKNKEELINDLLNII----CEGDIILVKASRSLKFEEITKALLEK 453


>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 421

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 183/384 (47%), Gaps = 25/384 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ D+R       FF ++G ++DG+ F+  A++KGA  VV +     S     +    V
Sbjct: 11  GVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKAIV----V 66

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL +LA   R +    IIA+TGS GKTTTKE++   L+         G+ NNH+G
Sbjct: 67  KDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNLNNHLG 126

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + D  I E+G +H GEI  L  +  P    IT    AHL  F   E +  
Sbjct: 127 VPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYITNFGRAHLEGFGSFEGVIR 186

Query: 209 AKAEIFEGLEKTG-TIFLNYDDSF-FELLKAKSHALGIKTIYSFG--KSKNADFQLRKWK 264
           AK+E+++ L+K    IF + D+S   ELL+      G +  YSF     + A+ QL   K
Sbjct: 187 AKSELYQYLKKDNKCIFFSEDNSLQRELLE------GYEPTYSFSLEGREGANLQLSLLK 240

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S   V L+    E     IG + A N+   + I        +   + +  + P  
Sbjct: 241 -----SIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAEAIRRGVEGYIPTN 295

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +       +G   L+D +YNANP+SM AAI     +       ++ +LGDM E+G  
Sbjct: 296 NRSQ--FVEKTRGNRVLMD-AYNANPSSMHAAIEAFQALP---SAHKVLILGDMKELGAY 349

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408
           S+  H  L   ++ Y  + V L G
Sbjct: 350 SEREHQQLVTDIATYPWTAVLLIG 373


>gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 503

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 190/374 (50%), Gaps = 24/374 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  V+V   + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVARGASGVLVERLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             VD+   AL ++A A   R +AT ++A+TGS GKT+ K +L   L+   +      YA 
Sbjct: 79  VVVDNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILTEAGRVDGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D D  I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256
              +  +A  K  I+  L   G   +N DD+F   FE  + +S  +  + +  FG   +A
Sbjct: 198 LGSLLGVAQTKGAIYAALPAGGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRFGVQASA 256

Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +   R+ +       +  V  QG++ ++     G H   N L   G+   L A +   + 
Sbjct: 257 EITARQLRLHPGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A  +   +   G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VL
Sbjct: 314 AAGLAQARAVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAA--QGEG--WLVL 368

Query: 376 GDMCEMGELSQSFH 389
           GDM E+G    + H
Sbjct: 369 GDMRELGAEGVALH 382


>gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 417

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 172/374 (45%), Gaps = 51/374 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R       F A+ G ++D HD+I  A Q GA  +V N  +     +  +P   VD
Sbjct: 26  VCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGAVAIVANKPV-----NNQLPTLVVD 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   ALN +A       K  +IAITGS GKTTTK ML   L+    T    G+ NNH+GV
Sbjct: 81  DTQIALNTIASWHLKNIKPIVIAITGSNGKTTTKNMLANILNLQAPTLKTQGNLNNHLGV 140

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL  +     + + E+G +HLGEI  L  LV P+IA++T    AH+  F G + +  A
Sbjct: 141 PMTLLTLEEQHQYAVIEMGANHLGEIAHLCSLVNPNIAIVTNTLDAHIGEFGGFDNLVKA 200

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK------SK--NADFQLR 261
           K EI+          +N  D+F   +             SFGK      SK  N  F L 
Sbjct: 201 KGEIYSNNSHN---IVNTQDTFTGDV-------------SFGKGGDIFASKLVNNKFDLN 244

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +KQ               + V  + IG H  +N L        L  D++   + L V  
Sbjct: 245 IYKQ--------------KISVTLNLIGTHNIENALAASTCAYALGIDINLIKQGLEVTK 290

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            + GR +     +N   F +ID++YNANP S   A+  L   S    G +I VLG M E+
Sbjct: 291 AEHGRLE----VINTKKFRIIDDTYNANPHSTTTALKALQDFS----GEKIVVLGAMREL 342

Query: 382 GELSQSFHIDLAEV 395
           G  S+  H+ + ++
Sbjct: 343 GNDSEELHLKIGQL 356


>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 211/449 (46%), Gaps = 28/449 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFG- 87
           +SIDSR +     F A+ G   DGH F+    ++GA +V+V+ +  ++ GS L  P  G 
Sbjct: 33  VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92

Query: 88  --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  L +LA   R      ++ + GS GKTTTKEML   LS+  + +    + NN
Sbjct: 93  LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL  M  + +  + E+G++H GE+  LT + RP   ++T I   HL     ++ 
Sbjct: 153 HLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDG 212

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKS--------HALGIKTIYSFGKSKNA 256
           +A A+  +F  L++T GTIF+N DD                  H     +      S   
Sbjct: 213 VARAERALFSFLDETGGTIFVNNDDPRLRDAATDPQRHILYGMHCGDCCSCRGGALSVLP 272

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D  LR +   SE+   E++L         +  G H   N L    +      +     + 
Sbjct: 273 DGSLR-FMLYSERGDEEIRL---------NFTGRHNVLNALAAAAVGIFFGIEPREVRRG 322

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L    P+EG  KR    ++ G  TL++++YNANP SM+ AI  L  +    +GRRIAV+G
Sbjct: 323 LEGLVPREG-WKRLE-VVSAGGVTLLNDTYNANPDSMRLAIDALLDMP--CQGRRIAVIG 378

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+     H    + L+  ++  ++  G    ++    P     H++ + + LF  
Sbjct: 379 DMLELGDAGPGEHEATGKYLAGSSVDMIFSFGELAGSICFLNPGRCRGHFT-SREKLFDA 437

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   L +GD V+ K S        +  +L
Sbjct: 438 LSRELEEGDTVLFKGSRGMKLEETVTAIL 466


>gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
 gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 450

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 177/385 (45%), Gaps = 29/385 (7%)

Query: 11  LQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LQ + G  + G +P   V G+  D+R++AP   F A++G  +DGHD+   AV  GA LV+
Sbjct: 9   LQTLLGAEAEGTLPMS-VRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGAALVI 67

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                      +++P   V D L A   LA   R R    ++A+TGS GKTTT+E++   
Sbjct: 68  AER-------PVAVPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTRELIRAV 120

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L++     A  G+ NN +GVP  L ++     + + E+GM   GEI  L     P++ VI
Sbjct: 121 LATAGPVLAPPGNENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPNVGVI 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  AH+        IA AK E+   L  +G   LN +D    L  A+ H  G    Y 
Sbjct: 181 TNVGSAHIGRLGSHAAIADAKCELLAELPCSGIAVLNGEDERL-LSTARRHWAGPVLTYG 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D            S+  V L    +  +    G H   N L  L +   L  +
Sbjct: 240 L---DAGDVM---------GSFDGVHLHVDGIAFIPPLPGRHNHLNFLAALAVARHLGLE 287

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +    + L       G   R R    +G   LIDE+YN+ P S +AA++ L+ +     G
Sbjct: 288 LLQVRERLKDLQLPTG---RSRVIALEGDVQLIDETYNSAPESARAALAWLAGLP----G 340

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394
           RRIAVLG M E+GE S+  H  L E
Sbjct: 341 RRIAVLGQMRELGEFSRELHRVLGE 365


>gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 468

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 196/396 (49%), Gaps = 14/396 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  + IDSR + P + F  + G   DGH F   AV+KGA  V+    +    G+   PV 
Sbjct: 24  VTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGAVAVLAQRPLPEVDGA---PVL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  LAVA R   ++ ++A+TGS GKTT KE++   L++         + NN 
Sbjct: 81  LVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVKELIAQTLAAEMSVAKNHKNLNNQ 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PL++     + D  + E+G+S  G++  L  +  P +AVI  I PAHL     +  +
Sbjct: 141 IGLPLSMLAASGEEDVWVMEVGISRQGDMEELAPIASPDLAVIHNIGPAHLEGLGSLRGV 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQLRKWKQ 265
           A AKA +   + + G   +N D  + EL +A       ++ + +  +++ A +       
Sbjct: 201 AEAKAHLLTSVRRGGAAIVNRD--YPELWEAAQRIFPSVRAMST--QNEKAPYFCTYLGP 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +     ++L+ + +EV    +G H A+N++       +L     + ++AL+     + 
Sbjct: 257 SQQGGVFLLRLEDERLEVDLPFLGAHFAENVVAAASAAYLLGMSAGSIVQALAKAQLPD- 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +R+  A + GF TLID++YNANP SM  AI   ++++  G    + VLGDM E+G  +
Sbjct: 316 --QRF-AAHHLGFGTLIDDTYNANPLSMSRAIQAATELA--GNRPLVLVLGDMLELGSEA 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++ H+ L E  +    + V   G    A+   L ++
Sbjct: 371 EAEHVRLGERAAASGCAAVVYRGGFAKAVARGLAQA 406


>gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 460

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 193/387 (49%), Gaps = 47/387 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R+I  +  F A+KG  +D HDF   A   GA  ++V+  +      + +P  
Sbjct: 24  ISAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKRL-----PVDLPQL 78

Query: 87  GVDDVLGALNK----LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D   AL +    L V    +     +A+TGS GKTT KE+    L++     A  G+
Sbjct: 79  VVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGSCGKTTVKEISAAILATKGNVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IG PLTL R+  +  + + ELG +H  EI + T+LV+P +A+I  +A AHL  F  
Sbjct: 139 FNNDIGAPLTLLRLTPEYQYAVIELGANHQQEISYTTNLVKPDVALINNLAAAHLEGFGS 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLR 261
           ++ +A AK EIFEGL   G   +N D +   L +     L    + +F   + +AD+   
Sbjct: 199 LKGVAKAKGEIFEGLSDGGIAIVNLDSNDLPLWQP---LLAQHQVLTFSATASDADYHAE 255

Query: 262 K----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG-IVSILTADV 310
           +          +  C+    ++V L   ++  +H+      A  + ++LG  ++ + A +
Sbjct: 256 RININAQGLACFTMCTPIGKVDVNL---TLAGMHNVANALAAAALTISLGATLAEVKAGL 312

Query: 311 DTAIKA---LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           +T       L +  P+ G               LID++YNA+ A++KAAI VL+      
Sbjct: 313 ETMANVKGRLDITEPRAG-------------LRLIDDTYNASVAAVKAAIDVLANF---- 355

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +G+R  +LGDM E+G+ S + H ++ E
Sbjct: 356 QGQRYFILGDMAELGDESDNLHREVGE 382


>gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 473

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 199/451 (44%), Gaps = 15/451 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +GA  V+V+    A++   +
Sbjct: 20  PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRPPAATLDMTN 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139
           + V  V D    L +LA   R +    ++A+TGS GKTT KEM++   +         A 
Sbjct: 80  VAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDARLAT 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I      H   
Sbjct: 140 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMINNAQREHQEF 199

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADF 258
              +E +A   A +   L   G      D +   E       A G + +  FG    A  
Sbjct: 200 MVSVEAVAEEHAAVLAALPADGVAVYPRDAANGGEFAPVWQAAAGSRRVLDFGIEAGA-- 257

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   +E   ++VQ  G+   +    +G H A+N L             +   +AL 
Sbjct: 258 VTGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAATACALAAGVAPEVIAQALG 317

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F P +GR +R +   + G   +ID++YNANP SM+AAI  L+ +       R  VLGDM
Sbjct: 318 NFAPVKGRLQR-KQGTHGGL--VIDDTYNANPDSMRAAIDALATLP----APRWLVLGDM 370

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G    +FH ++        I  V  +G       DA       H++   D L     
Sbjct: 371 GEVGSQGPAFHEEIGAYARTRGIDAVLATGELARHTVDAFGAGAQ-HFASAED-LIEHGL 428

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++     V+VK S      R++  L+ + P
Sbjct: 429 GAIAPAATVLVKGSRFMRMERIVEALVLKDP 459


>gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
 gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
          Length = 478

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 202/446 (45%), Gaps = 45/446 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S D+R+I   + F A+ G ++D + F+  A ++GA   +V         ++ IP  
Sbjct: 24  ITAVSTDTRTIKAGDLFIALSGDNFDANRFVATAAEEGAIAAIVTKKQ-----AVDIPQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  L    R      + A+TGS GKTTTKEML   L  +  T A  G++NN 
Sbjct: 79  IVKDSRIALGLLGKMVREHVAPKVAALTGSNGKTTTKEMLAAILKLVAPTLATAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+     F + ELG +H  EI + T LV P + +I  +  AHL  F  ++ +
Sbjct: 139 IGVPLTLLRLQQQHQFAVMELGANHKKEIAYTTGLVLPDVVLINNVDAAHLEGFGDLQGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--- 262
           ASAK+EI  G+++ G   LN DD F+     K  A   +   SF     NAD+       
Sbjct: 199 ASAKSEILSGVKQQGIAVLNRDDKFYPYWLRKVDA---QRQVSFSVVDDNADYFAADIEF 255

Query: 263 -------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                  +K C+      + L            G H   N L    I S    D+ T  +
Sbjct: 256 DNAGNPTFKLCTSNGDCTINLAVA---------GRHNVANALAAAAIASCFGIDISTIKR 306

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L      +GR K  +         +ID+SYNAN AS+KAAI+VL+    H     + V+
Sbjct: 307 GLESMVNVQGRLKISQLTPR---IRIIDDSYNANIASVKAAINVLT----HFPSTNVLVM 359

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G  +   H  +        + HV+  G        A+ R   +   E+  G   
Sbjct: 360 GDMGELGSSTADMHQQVGHYAQQQQVDHVYTCG--------AVSREAALTAGES--GRAF 409

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLI 461
             QS+LVD  V +V ++     + L+
Sbjct: 410 LAQSALVDALVELVTTAPDTQMFTLL 435


>gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 432

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 187/386 (48%), Gaps = 26/386 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+++G    +V+    A +G     +  V+
Sbjct: 16  VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEAEYA-VGDDERYIL-VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L +LA   R + K  +I +TG+ GKTTTKE+    LS         G+ NNHIGV
Sbjct: 74  DVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  +    + E G SH GEI+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLELTSEHTIAVIETGASHPGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQLRK 262
           K E+++ L  K GT+F+N+D    + +    H +   +      S      + A F   +
Sbjct: 194 KGELYDYLRAKHGTVFINHDSEDLKRIAGGLHQICYGSPCDEVLSVEGEVLECAPFLKFR 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           W+    + W EVQ            IG +  QN+L    I      +VD   +AL+ + P
Sbjct: 254 WRPAGGE-WQEVQTG---------LIGAYNMQNLLAAATIGRTFGVEVDAVNRALAAYEP 303

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           K  R +      N+    L+ ++YNANP SM+AAI     +      RR+A+LGDM E+G
Sbjct: 304 KNNRSQLTETDDNK----LLVDAYNANPTSMRAAIENFRDMKVE---RRMAILGDMGELG 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
           + S   H  +A++L      HVWL G
Sbjct: 357 DCSWKAHQAIADLLVESGFEHVWLVG 382


>gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
 gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
          Length = 525

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 208/439 (47%), Gaps = 67/439 (15%)

Query: 6   TFHDLLQAIQGH-------SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           T  +  QA+ G        S  I  Q  V+    DSR + P   F AIKG   DGH ++ 
Sbjct: 5   TLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDGHAYLE 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA---------VAARLRSKAT 109
            A   GA   VV+ ++  +    S+P   V+D + AL  LA         +A + R+  T
Sbjct: 65  QAAAAGAVAAVVDHEVAGA----SLPQILVEDTVRALGFLARHNIEKRRSLAGQARTPFT 120

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGSVGKTTTK+++   LS +  T A  GS+NN IG+PLT  ++  +  F + E+G 
Sbjct: 121 IVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLVAEMGA 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +GEI +LT + RP +AV   +  AHL  F  +E I  AK+E+   L  +G   LN +D
Sbjct: 181 SAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKSELVRALPPSGLAILNEND 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW----------------ME 273
               L+   +   G++ +  FG  ++   + R  +  SE ++                ++
Sbjct: 241 ENIRLMPEMT---GVRNLLWFGLHEDRPDEDRSDE--SETAYPSVPSAMSAAEIYGDQVQ 295

Query: 274 VQLQGKSMEVVH--HGIGYHMA------QNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           V  Q +    VH   G G  M+       N++  L  + +  A +D   +A++     +G
Sbjct: 296 VDDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYA-MDLPTEAIAGILAHQG 354

Query: 326 RGKRYRCALNQG--------FFTLIDESYNANPASMKAAISVLSQISPHGEGR------- 370
               +R  + Q          FTLID+S+NANP SMKA +  L+    H E R       
Sbjct: 355 AQSPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAW--HAESRTRDERPY 412

Query: 371 RIAVLGDMCEMGELSQSFH 389
           R+AVLG M E+G   +  H
Sbjct: 413 RVAVLGSMLELGPNEKELH 431


>gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 503

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 186/375 (49%), Gaps = 26/375 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V   + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACI 140
             V D   AL ++A + +      ++A+TGS GKT+ K +L   L    +      YA  
Sbjct: 79  VVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATP 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL   
Sbjct: 139 GNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNAD 257
             +  +A  K  I+  L   G   +N DD+F   FE       A G + I  +G    AD
Sbjct: 199 GSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPAQG-RCIVRYGLQIGAD 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ + Q     +  V  QG++ +V     G H   N L   G+   L A +   + A
Sbjct: 258 ITARELQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIA 314

Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L+  HP  GR  +    L  G   LID+SYNANP S+ AAI  L+     GEG    V
Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLV 367

Query: 375 LGDMCEMGELSQSFH 389
           LGDM E+G    + H
Sbjct: 368 LGDMRELGAEGLALH 382


>gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 503

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 186/374 (49%), Gaps = 24/374 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V   + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACI 140
             V D   AL ++A + +      ++A+TGS GKT+ K +L   L    +      YA  
Sbjct: 79  VVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATP 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL   
Sbjct: 139 GNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNADF 258
             +  IA  K  I+  L   G   +N DD+F    + +  A  +  + I  +G    AD 
Sbjct: 199 GSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPVQGRCIVRYGLQIGADI 258

Query: 259 QLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA- 316
             R+ + Q     +  V  QG++ +V     G H   N L   G+   L A +   + A 
Sbjct: 259 TARELQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIAA 315

Query: 317 -LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+  HP  GR  +    L  G   LID+SYNANP S+ AAI  L+     GEG    VL
Sbjct: 316 GLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368

Query: 376 GDMCEMGELSQSFH 389
           GDM E+G    + H
Sbjct: 369 GDMRELGAEGLALH 382


>gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
 gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
          Length = 440

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 180/387 (46%), Gaps = 20/387 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A++KG    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDERYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 193

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQC 266
           K E+++ L+  G  +FLN  +     L   +       I ++G+ + AD Q  +     C
Sbjct: 194 KGELYDFLKAHGCLLFLNESNPD---LTEMAEQRAFDRIITYGQDETADVQGYVVSCAPC 250

Query: 267 SEQSWMEVQLQGKS-----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +  W    L          EV  H IG +   NML  + I             AL  + 
Sbjct: 251 LKFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYV 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM E+
Sbjct: 311 PHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFQLMEVEN---KMAILGDMREL 363

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           G+ S   H  + E+L   +I +VWL G
Sbjct: 364 GDASAEEHQKVVELLKATDIRNVWLVG 390


>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 458

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 215/443 (48%), Gaps = 30/443 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGV 88
           +  DSR I P   F A+KG  +D HDF+  A+Q GA G++V         G + +    V
Sbjct: 29  VCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLGAHGVIVSRMQHDLPDGDILL----V 84

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L AL +LA   R +    ++A+TGS GKTTTK+M++  L +       +G++NN IG
Sbjct: 85  DDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKDMISALLETKYLVLKTLGNFNNEIG 144

Query: 149 VPLTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +PLTL  + +D   G  + E+GM  LGEI FL  +  P   VIT I   HL     +E I
Sbjct: 145 LPLTL--LGLDESHGAVVVEMGMRGLGEIDFLARIACPTAGVITNIGETHLERLGTVENI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265
           A AK E+   +   G   LN DD +    +  +H    K I Y    S +      K   
Sbjct: 203 ARAKTELLPHIPVGGYAVLNGDDPW---QRKYAHLTRAKVIFYGMDHSNHVYADNIKCNM 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNML--MTLGIVSILTADVDTAIKALSVFHP 322
            +  S+    ++ K  +V H  + G H   N L  +T+G+   L+ ++      +     
Sbjct: 260 GAGASF--TVIRDKIAKVFHLPVPGRHNIYNALAAITVGLQEGLSWEM-----CMEGLQN 312

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
               G R +     G   +I+++YNANPAS KAA+ +L+++     G+++AVLGDM E+G
Sbjct: 313 VVLSGMRLQIIDCNG-LKIINDTYNANPASSKAAVRILAEMPC--AGKKVAVLGDMYELG 369

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG---FHVL-ALKDALPRSIHVHYSETMDGLFLFIQ 438
           + +   H ++ E +    I  +   G    H+  A K A     +++ S   +     + 
Sbjct: 370 QRTVQGHREVGETVQNLKIDILVTVGELALHIAEAAKAAGMDRKNIYVSRNNNEALEILN 429

Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461
           + L  GD+V+VK S      +++
Sbjct: 430 NILKAGDLVLVKGSRGMKMEKIV 452


>gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
 gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
          Length = 430

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 176/371 (47%), Gaps = 29/371 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP G    I  DSR+I+  + F  +KG   DGH+FI  A   GA         +A+I   
Sbjct: 24  VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70

Query: 82  SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            I   P   V D L A   LA     +    +IA+TGS GKTTTK+M+   LS+  KTY 
Sbjct: 71  EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+P T+  MP D +  I E+G  HLG+I  L+ + +P IAV+T I  AHL 
Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E+IA  K +I +G+   G +    D      L A    +       FG  +  + 
Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q+ + K+  E+  +  +      ++     G + A N ++   +  +L    +  + AL 
Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  R +  + A       ++ + YNANP +M+  +   S I  +  G++IA+L DM
Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357

Query: 379 CEMGELSQSFH 389
            E+GE S   H
Sbjct: 358 KELGEQSVDLH 368


>gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Francisella cf. novicida 3523]
          Length = 453

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 196/382 (51%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  V     +V+    L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIIANRDGHEFIPSAIANGAKAV-----LVSKKQDLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKTT KEM+   L S KK +   G++NN+
Sbjct: 77  VCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVKEMIVTLLGS-KKVHFTQGNFNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P +VDF + E G +  GEI+    +++P+IA+IT +  +HL N   ++ +
Sbjct: 136 LGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGASHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L K G   +N DD   E + A +  L  K I     +++AD  +  ++  
Sbjct: 196 MIEKGELLKALPKDGFCIVNLDD---ERIPAYADKLDCKKITCSMSNQDADILILDYQVT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   +++++  K        IG H   N +  L I S++ A  +      +  + K  +
Sbjct: 253 PELYDVKIRIFDKEYSYQLPNIGKHNLSNSM--LAIASVVAAGFEPNSFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     LN    TL+D++YNA+  +++AAI  L++     +G+R+  +  M E+G+ ++
Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLAEF----DGKRVIAITSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L+  N+  ++L G
Sbjct: 366 NYHRKMGQWLNKANLDKIFLFG 387


>gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4]
 gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei
           5_1_36/D4]
          Length = 432

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 196/407 (48%), Gaps = 31/407 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+   E L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGGEGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420
             H  +A+ L       V L+G               V+ALK++L R
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFQDVVALKESLER 407


>gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
 gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
          Length = 467

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 191/382 (50%), Gaps = 35/382 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R       FFA+KG H+D H ++  A+ +G   +VV   M+     ++ P  
Sbjct: 25  VETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIAQGCIALVVEQRML-----INAPQI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI------ 140
            V D   AL +LA   + +     IAITGS GKTT KEM   A   ++K  AC       
Sbjct: 80  IVADTRLALGELAKWLKAKLNPKTIAITGSSGKTTVKEM---AAKILQKLTACADEVLYT 136

Query: 141 -GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN +GVPLTL R+     F + ELG +HLGEI + T + +P   V+  +A AHL  
Sbjct: 137 SGNLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIAYTTSITQPDACVVNNVAAAHLEG 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLN---YDDSFFELL---KAKSHALGIKTIYSFGKS 253
           F  +  +A AK EI+ GL   G   +N   Y  ++   +   K +S AL     Y   + 
Sbjct: 197 FGSLAGVAQAKGEIYRGLPPEGIAIINQASYSSAWQTEIGSRKVQSFAL-----YPSAEH 251

Query: 254 KNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           K  DF         +  ++M    QG+ +E+    +G H   N+L    +V  + AD+  
Sbjct: 252 KPVDFSAENVHLHLNGSTFMLHSPQGE-IEINLPYLGEHNVSNVLAASALVMAVGADL-A 309

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           AIKA  +  P   +G+     +N+ +  LID++YNAN  SMK+A+ VL       +  RI
Sbjct: 310 AIKA-GLEQPVAVKGRLCPLPINR-YCLLIDDTYNANVDSMKSAVQVLKNY----QAFRI 363

Query: 373 AVLGDMCEMGELSQSFHIDLAE 394
             + DM E+G+ S + H ++A+
Sbjct: 364 FAVADMGELGKDSVACHQEVAD 385


>gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
 gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
          Length = 439

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 209/437 (47%), Gaps = 24/437 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           + DSRSI  +  +  I+G   DGH FI  AV +GA   +    +   +  + I V  V+D
Sbjct: 25  ATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQGAIATLWKKGI--PLPEMDITVLEVED 82

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL  +A     +    +IAITGS GKT+TK+M+   L    +T+   G++N+ IG+P
Sbjct: 83  PLQALQIIAKRYLQQVAPKVIAITGSNGKTSTKDMIESVLKQSFRTHKTAGNFNSDIGMP 142

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT+  MP++ +  + E+GM+  G+I  L++L  P IA++T I  +H     G   IA AK
Sbjct: 143 LTILMMPIETEVAVLEMGMNGFGDIELLSNLAEPDIALVTNIGESHAEQVGGRTGIAQAK 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI  GL+  G +F++ D+     + A+         Y   +++ A F    +K      
Sbjct: 203 LEIRSGLKPNGHLFVDGDEPLLGEVPAERIGYHATNTYVIEQAE-ATFIGTTFK------ 255

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                  G +  +    +G H  +N    +     L    D     L+       R +R 
Sbjct: 256 -----FDGTTFSIPV--LGKHQVRNAAYAIATAKALGLTDDVIQAGLNDVQLTPMRMER- 307

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              L  G   +I+++YNA+P SM AAI  ++ +   G   ++ VLGDM E+G+  +  H 
Sbjct: 308 ---LMYGQTAIINDAYNASPTSMNAAIETIATLD--GFTNKVVVLGDMYELGQQERLLHA 362

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + + ++L  +SH  L G     + D +   ++ V +++T++     +Q  L    V+++
Sbjct: 363 SVGKKIAL-PVSHAILVGGKGRYIADGIADPTVQVQFADTVEEAARLLQPLLGQQTVILL 421

Query: 450 KSSNSCGFYRLINLLLE 466
           K+S      ++   L E
Sbjct: 422 KASRGLALEQIFTFLNE 438


>gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 433

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 194/389 (49%), Gaps = 31/389 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+Q+G   VVV+       G     +  VD
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDEAEYCVQGDERYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL A   LA   R      I+ ITG+ GKTTTKE+L   L         +G++NN IGV
Sbjct: 74  NVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGEKYNVLYTLGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  LV P +A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193

Query: 210 KAEIFEGLE--KTGTIFLNYDDSF-------FELLKAKSHALGIKTIYSFGKSKNADFQL 260
           K E+++ +   K G +F++ ++          +L+K  + A     ++  GK  +A   L
Sbjct: 194 KGELYDFMRQSKRGKVFVDANNPHLMGIAEGLDLVKYGTPAR--PDLFVSGKVVSAAPFL 251

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R   Q    +W EVQ          H +G +   NML  + +   L    D A +AL+ +
Sbjct: 252 RFAWQREGGAWNEVQT---------HLVGAYNVLNMLAAISVGLYLGVSADEANRALAHY 302

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMC 379
            P   R +    A N+    LI ++YNANP SM  A++    +  PH    ++A+LGDM 
Sbjct: 303 VPSNNRSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVPH----KMAILGDML 354

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           E+G +S+S H  +A+ LS   +  VWL G
Sbjct: 355 ELGAVSESAHQAIADQLSQLALDEVWLVG 383


>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
          Length = 453

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 462

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 195/423 (46%), Gaps = 55/423 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  H++   I    +G      +N ISI S  I  Q  F A+ G  YDGHDF+  AV  G
Sbjct: 4   FRLHEIACFINAKCVG--SDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++VN  +     SL IP   V D   AL K+A   R +  + IIAITGS GKT+ KE
Sbjct: 62  AKALLVNRYV-----SLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L       A   +YNN IGV +TL ++   +DF + ELG + LGE++ L  +V  
Sbjct: 117 MTASILKECGTVIATQKNYNNFIGVSITLLKLTYGIDFAVVELGSNKLGELKKLGEIVGA 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALG 243
            +A++  I  +HLS F  +  I   K +IF G+        +N D               
Sbjct: 177 DVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINLDS-------------- 222

Query: 244 IKTIYSF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI------------- 288
               YSF  G S   +F+ +KW     +  + V     ++ +  HGI             
Sbjct: 223 ----YSFVQGNSILLNFK-KKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPI 277

Query: 289 -----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N+L    +   + A +   +  L   +   GR   +   LN+G   LID
Sbjct: 278 FMPILGIHNISNILAASALSFAVGASLSNIVHGLQKMNALPGR--LFPFILNRGKLCLID 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYNI 401
           ++YNAN  SM AAI+VLS +     G RI V+ DM E+G+L  ++ +H  +  ++   NI
Sbjct: 336 DTYNANIGSMIAAINVLSFM----PGYRILVVSDMLELGDLKMARYYHCYIGRLILGSNI 391

Query: 402 SHV 404
            ++
Sbjct: 392 DYI 394


>gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
          Length = 464

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 201/416 (48%), Gaps = 45/416 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +SI+S+ +   + F AI+G    G+ F+  A++KGA   V +++ V      +   F
Sbjct: 21  INNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGA-FAVYDSEAVKIDEKYAERAF 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  L K A   R      +I ITGS GKTT K+M+   LS   K     G+YNNH
Sbjct: 76  FVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEGNYNNH 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL R   D DF I E+GMS  GEI  L  +  P I VIT I  +HL      E +
Sbjct: 136 IGLPFTLLRAEKDDDFIILEMGMSDFGEIDLLGQIALPDINVITNIGESHLEFLKTKENV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS----HALGIKTIYSFGKSKN------- 255
             AK EI   ++   T+ +N DD + + +KA++     AL ++      K+ +       
Sbjct: 196 FLAKTEIIPHIK--STLVINGDDKYLKNVKAENIEIVRALNLRNNEYEDKTSDFYYGDIH 253

Query: 256 -----ADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                 +F L+ + K C  QS +E   +        + +G H   N++M + +      +
Sbjct: 254 FDESGTNFFLKYFGKMC--QSTVERNYKT-------NVLGEHNVLNLVMAIAVAKQFGME 304

Query: 310 ---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A+K + +       G R++   N G  T I+++YNA+P SMK ++   S I   
Sbjct: 305 DKIISEAVKNIEL------TGMRFQIIEN-GNTTYINDAYNASPMSMKKSLETFSLI--F 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +  +I VLGDM E+GE     H DL + +   N   ++L G  + +L + +  ++
Sbjct: 356 NDKLKIMVLGDMLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKENM 411


>gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 458

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 207/461 (44%), Gaps = 50/461 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F  + G + DGHDFI  A + GA  V               PV 
Sbjct: 26  VTSVAFDARELRPGALFVPLAG-NRDGHDFINQARENGA--VATLWASARDDQPTDFPVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  +LA    L+    ++AITGS GKTTTK+M    L S    +    ++NN 
Sbjct: 83  LVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTKDMTAAVLGSQYNIHKTQANFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP T+  M  + +  + E+GM   G++  L+ +  P +A IT I  AH+  F   ++I
Sbjct: 143 IGVPQTILSMEANTEILVIEMGMDRPGQLHALSEIAMPDVAAITMIGEAHIEFFKTRDKI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSF----GKSKNAD 257
           A AK EI + L++ G +  + D+        +L +    +    T+Y      G++K   
Sbjct: 203 ADAKMEITDFLKEDGLLVYDGDEPLLNERVGDLERETFGSATTNTLYPIQVRAGETK-TQ 261

Query: 258 FQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           F+L  W   +     E+ + G      ++  +  G  YH+   ++               
Sbjct: 262 FKLNAWPDVA----FEIPMMGAYNVNNALAAILIGQHYHIKPEVMS-------------- 303

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP-HGEGRR 371
             KAL+ F     R +       Q    ++ + YN+NP    AAI VL   S    +GRR
Sbjct: 304 --KALANFEVTRNRTEWLVGTAGQ---RMLSDVYNSNPT---AAIEVLRNFSHFETDGRR 355

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSE 428
           IAVLGDM E+G  S+  H  LA VL    I  V+L G  +  L D L     +  +HY E
Sbjct: 356 IAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIYPAEQLHYFE 415

Query: 429 TMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 L   +  ++   D+VV+K+S+     +++  L  E
Sbjct: 416 KTQQPELITALAETIQPSDLVVLKASHGLHLEKVVAALTTE 456


>gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 509

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 229/506 (45%), Gaps = 60/506 (11%)

Query: 11  LQAIQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-- 65
           + AI G S+  V  P   V G +  DSR +     F A+ G   DGHDF   A+++GA  
Sbjct: 9   IAAITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVA 68

Query: 66  ---------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA 108
                      ++V      +  + +  ++  D+      V+GAL+ LA  V +RL ++ 
Sbjct: 69  VLAARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQ 128

Query: 109 --TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ +TGS GKT+TK++L     +  +T A  GS+NN +G+P T  R      F + E
Sbjct: 129 GLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCDEHTRFLVAE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTI 223
           +    +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L      G  
Sbjct: 189 MSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEALPAAADGGVA 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGK 279
            LN DD F   +  ++ A  +   YS  + + AD Q      +    +  S+       +
Sbjct: 249 VLNADDPFVSSMAPRTQAKVV--YYSANRPQAADAQYYATDIELDDVARPSFTFHAPGVE 306

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M +     G H   N L      + + + V+ A+ A ++   +     R      +   
Sbjct: 307 PMSIKLQVFGKHQVSNALAAA--AAAIESGVEPAVVARALSGHQTSSAHRMDVRTRRDGV 364

Query: 340 TLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           T+ID+SYNANP SM AAI+ L+  S    + R IAVLG+M E+G  +   H  L  VLS 
Sbjct: 365 TVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRILGSVLSK 424

Query: 399 YNISHVWL--SGFHVLALKDALPRSIHVHYSET------------MDGLFLFIQSSLVD- 443
           Y++ ++     G H +A+ +A     H H  +T            ++ +     + + D 
Sbjct: 425 YHVDYLVAVGEGAHTVAMVEAA----HAHGIQTELCPDIEAATAAVENILRVAPAGVEDW 480

Query: 444 -----GDVVVVKSSNSCGFYRLINLL 464
                 DVV+VKSSN+   +R+   L
Sbjct: 481 SARAAKDVVLVKSSNAQRLWRVAEQL 506


>gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
 gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
          Length = 455

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 208/445 (46%), Gaps = 22/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V   + DSR + P   F  +   + DGH ++  A   GA + +   D   ++ S  +PV 
Sbjct: 24  VTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNGATVALWQADH-QNVPS-HLPVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  +LA     +    ++A++GS GKTTTK+ +     +  KT     ++NN 
Sbjct: 81  IVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKDFIAAIGQTSYKTVKTPENFNNE 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP T+  MP D +  + E+GM H G++ FL+ LV+P IA++T I  AH+  F   E I
Sbjct: 141 IGVPQTILSMPTDTELLVIEIGMDHPGDLTFLSKLVKPDIALLTMIGEAHIEFFKTRERI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K EI  GL++ G +  N D+    L +   HA  +    SFG +   D    +    
Sbjct: 201 ADGKMEIINGLKEHGHLVFNGDEPLL-LERVGQHAHLLHD--SFGLNSTNDLFASEIDMT 257

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q+  +     +   +     G +   N L  + +  +L        +AL+     E  
Sbjct: 258 PVQASFKTNQSAQRFTIPM--TGRYNVTNALSAITVGHLLHISDKKIAQALA-----EAP 310

Query: 327 GKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R     G F   ++ + YN+NP + K  +   +      +G+RIAVLGDM ++G+ 
Sbjct: 311 ITENRTEWLDGQFGGKILSDVYNSNPTAAKEVLHFFADTP--TQGKRIAVLGDMLQLGDA 368

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYS-ETMDGLFLFIQS 439
           S + H  L E L+   I+HV+L G  + +L++AL    P      Y+ +  + L   + +
Sbjct: 369 SPALHASLMENLNPDKIAHVYLVGEEIKSLEEALLPIYPAGTVKRYAIDDPESLLKDLLA 428

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            L   D +++K S+      ++N L
Sbjct: 429 DLTSDDTIMLKGSHGVHLENIVNQL 453


>gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 503

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 188/375 (50%), Gaps = 26/375 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V   + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACI 140
             V D   AL ++A + +      ++A+TGS GKT+ K +L   L    +      YA  
Sbjct: 79  VVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATP 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL   
Sbjct: 139 GNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNAD 257
             +  +A  K  I+  L   G   +N DD+F   FE  + ++  +  + I  +G    AD
Sbjct: 199 GSLLGVAQTKGAIYAALPADGVAVINADDAFGIWFE-QQLQAQPVQGRCIVRYGLQIGAD 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ + Q     +  V  QG++ +V     G H   N L   G+   L A +   + A
Sbjct: 258 ITARQLQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIA 314

Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L+  HP  GR  +    L  G   LID+SYNANP S+ AAI  L+     GEG    V
Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLV 367

Query: 375 LGDMCEMGELSQSFH 389
           LGDM E+G    + H
Sbjct: 368 LGDMRELGAEGLALH 382


>gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
 gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
          Length = 478

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 200/452 (44%), Gaps = 17/452 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +GA  V+V+    A++   +
Sbjct: 25  PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRPPAATLDMTN 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139
           + V  V D    L +LA   R +    ++A+TGS GKTT KEM++   +         A 
Sbjct: 85  VAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDARLAT 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I      H   
Sbjct: 145 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMINNAQREHQEF 204

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADF 258
              +E +A   A +   L   G      D +   E  +    A G + +  FG    A  
Sbjct: 205 MVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYARVWKAAAGSRRVLDFGMDAGA-- 262

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   ++   +EVQ  G+   +    +G H A+N L             +   +AL 
Sbjct: 263 VTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATACALAAGVAPEVIAQALG 322

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F P +GR +R +   + G   +ID++YNANP SM+AAI  L  +       R  VLGDM
Sbjct: 323 NFAPVKGRLQR-KQGTHGGL--VIDDTYNANPDSMRAAIDALVTLP----APRWLVLGDM 375

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFI 437
            E+G    +FH ++        I  V  +G       DA  P + H   +E    L    
Sbjct: 376 GEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDAFGPGAQHFASAED---LIEHG 432

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             ++     V+VK S      R++  L+ + P
Sbjct: 433 VPAIAPAATVLVKGSRFMRMERIVEALVLKDP 464


>gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
 gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
          Length = 457

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 215/475 (45%), Gaps = 36/475 (7%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V ++   +A+      P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  A-VVTLSEKEIANH-----PYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTKYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+    ++ L   D   E     ++    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-APDSLLLAPADPIVE-----NYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N  M   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QVLDLPVT----GKYNATNA-MIAS 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++     +  I+    F   E    R           ++ + YNANP +MK  +   S
Sbjct: 283 YVALQEGVSEEQIR--QAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     + 
Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400

Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 401 FPIGHVYYFKKTEDKDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVECLENE 455


>gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
 gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
          Length = 449

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 203/441 (46%), Gaps = 25/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR I     F  + G   DGH+F   A   GA   + +   +       I V  V 
Sbjct: 25  VEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHPTIEP--PQDILVIPVT 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + A  +LA A + +    II ITGS GKTTTK+M+   ++   +TY   G++NN +GV
Sbjct: 82  DTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYKTQGNHNNELGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+   P D    I E+GM H GEI  L+ L  P  A IT I  AH+ N    E IA A
Sbjct: 142 PLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITLIGEAHIENLGSREGIAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI  GL+K G   +  D+   E           +TI +FG ++  D Q    ++  +Q
Sbjct: 202 KMEITAGLKKDGFFMMPADEPLLEPFVPNL----TQTIETFGLTE-GDLQGDIVEESQDQ 256

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGK 328
           +   V     ++ V    +G +  +N L+ +GI        D AIK  L+ F   + R  
Sbjct: 257 TIFTVAGTTFTLPV----LGGYNVKNALIAIGIGRHFGV-ADEAIKEGLAHFQLTKNR-T 310

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           ++  A N     ++ + YNANP +M   +    ++     GRRIAVL DM E+G  S   
Sbjct: 311 QWVTAGNGA--AILSDIYNANPTAMGLVLDSFRKLPLA--GRRIAVLADMLELGPDSAQM 366

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVD 443
           H  +A  L   +   V+L G  + AL+      AL   +     +    L   +  +L  
Sbjct: 367 HEQMAAHLD-DSFQLVFLYGKEMQALQKRLANTALADKVRYFAIDEKPQLIASLIETLEP 425

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            D +V+K SN  G   +++ L
Sbjct: 426 SDSLVIKGSNGMGLSEVVDAL 446


>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           luteolum DSM 273]
 gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium luteolum DSM 273]
          Length = 476

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 206/442 (46%), Gaps = 40/442 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--- 87
           +IDSR+I     F A++G   DGH F+    ++GA   +V+ +   S+    +P  G   
Sbjct: 34  AIDSRAIDGPGIFIALRGESTDGHRFVQDVFRRGADFAMVSREW-HSLEKDPVPPPGKAY 92

Query: 88  --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D    L +LA   R      ++ I GS GKTTTKEM    L +  K +   G++NN
Sbjct: 93  IVVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKEMTAAVLRTGFKVHVSRGNFNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVP+TL  M  D +  + E+G++H GE+  LT + RP   ++T I   HL     +E 
Sbjct: 153 HLGVPITLLGMRRDTEIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEG 212

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +  A+ ++F+ L++  GTIF+N DDS        S       +Y  G  +         +
Sbjct: 213 VRLAERKLFDWLDRCRGTIFVNADDSRLADAATDSER---HVLYGTGSPEG--------R 261

Query: 265 QCSEQSWMEVQLQGK----------SMEVVHHGIGYHMAQNMLMTLGI---VSILTADVD 311
            CS +S + V   G+            +V     G H  QN +    +     + TA V 
Sbjct: 262 ICSAES-VSVGHGGRVSFTLTAGAVREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVK 320

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             ++ L    P+ G  KR   +  +G  T+I+++YNANP SM+ A+  L+ +     GRR
Sbjct: 321 AGLEGLL---PESGW-KRLELS-EEGGVTIINDTYNANPDSMRLALDTLADMPC--SGRR 373

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           IAV+GDM E+G  ++  H  +   L+   I   +  G         LP     H++   D
Sbjct: 374 IAVIGDMLELGATAEDEHRSIGRYLAGLPIDMFFTFGALAGLGGRELPERCRGHFT-GRD 432

Query: 432 GLFLFIQSSLVDGDVVVVKSSN 453
            L   +Q  +  GD V+ K S 
Sbjct: 433 ELLHALQEEVRSGDAVLFKGSR 454


>gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
 gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 217/457 (47%), Gaps = 39/457 (8%)

Query: 18  SIGIVPQGFVNG---------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           S+G  P GF  G         +SIDSR I     FFA+KG   DGH+++  A + GA   
Sbjct: 12  SVG-TPAGFALGEAVEWCDPSVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCA 70

Query: 69  VVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VVN +  +    S+         V D + AL +LA   R +    +I I GS GKTTTKE
Sbjct: 71  VVNREWYSRHAESVHQEGWRYLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKE 130

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L +  K +   G+ NNH+GVPLTL  +    D  + E+G++H GE+  LT + RP
Sbjct: 131 MTAAVLGTTYKVHMSKGNLNNHLGVPLTLFGLRDTHDLAVVEMGINHPGEMELLTSIARP 190

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             A++T I   HL     ++ +A A+  ++ + + + GT+F+N  D+   LL A   A  
Sbjct: 191 DFALLTNIGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDA--RLLAA---ARE 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           I+    +G  ++ +     W +      + ++   +     S+ ++ H  G H   N + 
Sbjct: 246 IQNRVDYGPERDGNL---IWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVA 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + S     ++   + L    P +G  KR    +  G   + +++YNANP S+  A+ 
Sbjct: 303 AAAVGSCFNVPLNAIAEGLGSLVPADGW-KRLE-FIEAGGIRIFNDTYNANPDSVTMALK 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-VLALKDA 417
            + +I     GRR+ V  DM E+GE+S + H  +  +++      V+  G H  L+   A
Sbjct: 361 TVCEIPC--SGRRVLVFADMLELGEVSDAEHRRMGALVAQLPFDAVYTYGEHAALSCLSA 418

Query: 418 LP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            P  R  +  ++  +D L  ++       D++++K S
Sbjct: 419 GPKCRGHYTSHAHLLDALKAYLSQD----DLLLLKGS 451


>gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
 gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
          Length = 461

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 222/459 (48%), Gaps = 41/459 (8%)

Query: 23  PQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGS 80
           P G  +  + +DSR       FFA+KG   DG  ++    +KGA  VVV     A ++  
Sbjct: 28  PNGKRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVVPKSRAAEALAR 87

Query: 81  LSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +  PV   +DVL +L++LA     R  S  TI  ITGS GK+TTKE L    + +  T  
Sbjct: 88  VRCPVLAAEDVLSSLHELAQNYVQRFPSVKTI-GITGSCGKSTTKEALARITAVLGSTAK 146

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ N+  G+PL++  +     +G+FE+G+ H+GE+  +  +++P IA++T +  +HL 
Sbjct: 147 TPGNLNSEYGLPLSIFGLDETSRYGVFEMGIDHVGEMDRMVGMLKPSIALLTNVGISHLE 206

Query: 199 NFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                E IA  KA IF  GLE     F++      +L++  +    ++  Y   +    D
Sbjct: 207 KMGSQEIIAEQKARIFHPGLEAG---FVSSSCKHLDLIQTIAARSLVR--YDAKEISAVD 261

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L  W+   E     V+            +G H+ ++++  + +   L A+     +AL
Sbjct: 262 LGLDGWQLTYEGHTFTVK-----------SVGRHLLEDVVGAIKVGRYLGANAGDIAEAL 310

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F P  GR   +R  +     T+ID+SYNA+  S  + ++ LS +S   +G +  VLG 
Sbjct: 311 EGFEPMHGRSFVHRSDV-----TIIDDSYNASLDSTNSILTYLSGLS--WKGSKKVVLGP 363

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYSETMDGL 433
           M E+G+LS+  H  +A  ++  + +  +L G  +    L LK    R   V Y++  + L
Sbjct: 364 MKELGKLSRQAHRMVARTVAASSFNQTYLFGSEMEEASLELKKLGYRG-QVKYTKDFEEL 422

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
              +Q  L  GD+ ++K+S S    RLI       P+IQ
Sbjct: 423 ESMVQKQLKGGDLFLLKASRSVAMERLI-------PSIQ 454


>gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
 gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
          Length = 449

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 203/441 (46%), Gaps = 25/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR I     F  + G   DGH+F   A   GA   + +   +       I V  V 
Sbjct: 25  VEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHPTIEP--PQDILVIPVT 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + A  +LA A + +    II ITGS GKTTTK+M+   ++   +TY   G++NN +GV
Sbjct: 82  DTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYKTQGNHNNELGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+   P D    I E+GM H GEI  L+ L  P  A IT I  AH+ N    E IA A
Sbjct: 142 PLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITLIGEAHIENLGSREGIAKA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI  GL+K G   +  D+   E           +TI +FG ++  D Q    ++  +Q
Sbjct: 202 KMEITAGLKKDGFFMMPADEPLLEPFVPNL----TQTIETFGLTE-GDLQGDIVEESQDQ 256

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGK 328
           +   V     ++ V    +G +  +N L+ +GI        D AIK  L+ F   + R  
Sbjct: 257 TIFTVAGTTFTLPV----LGGYNVKNALIAIGIGRHFGV-ADEAIKEGLAHFQLTKNR-T 310

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           ++  A N     ++ + YNANP +M   +    ++     GRRIAVL DM E+G  S   
Sbjct: 311 QWVTAGNGA--AILSDIYNANPTAMGLVLDSFRKLPLA--GRRIAVLADMLELGPDSAQM 366

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVD 443
           H  +A  L   +   V+L G  + AL+      AL   +     +    L   +  +L  
Sbjct: 367 HEQMAAHLD-DSFQLVFLYGKEMQALQKRLANTALADKVRYFAIDEKPQLIASLIETLEP 425

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            D +V+K SN  G   +++ L
Sbjct: 426 SDSLVIKGSNGMGLSEVVDAL 446


>gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
 gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
          Length = 469

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 180/387 (46%), Gaps = 20/387 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A++KG    +++    A  G     +  VD
Sbjct: 45  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDERYIL--VD 102

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+     +    +YNN +GV
Sbjct: 103 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 163 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 222

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQC 266
           K E+++ L+  G  +FLN  +     L   +       I ++G+ + AD Q  +     C
Sbjct: 223 KGELYDFLKAHGCLLFLNESNPD---LTEMAEQRAFDRIITYGQDETADVQGYVVSCAPC 279

Query: 267 SEQSWMEVQLQGKS-----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +  W    L          EV  H IG +   NML  + I             AL  + 
Sbjct: 280 LKFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYV 339

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM E+
Sbjct: 340 PHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFQLMEVEN---KMAILGDMREL 392

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           G+ S   H  + E+L   +I +VWL G
Sbjct: 393 GDASAEEHQKVVELLKATDIRNVWLVG 419


>gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M13399]
          Length = 452

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 177/364 (48%), Gaps = 23/364 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  AS+       
Sbjct: 23  LVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----A 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA A R      +  ITGSVGKTT KEML   L          A  G+
Sbjct: 79  LKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 455

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/468 (29%), Positives = 225/468 (48%), Gaps = 32/468 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TFH++ Q +           F   + +DSR +   + F A+ G   DGH F+    +KGA
Sbjct: 7   TFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKGA 66

Query: 66  GLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +V+ D +  +  +  +P+ GVDDVL AL KLA     + +  I+AITGSVGKTTTK 
Sbjct: 67  AAAIVSNDFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTTTKH 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +L   L          G+ N+ IG+PL+ L       D  I E+GM+  G I+ L  +  
Sbjct: 127 LLFQLLQKHFSVAFSPGNQNSQIGLPLSILNHYHGHEDVLILEMGMTAQGHIQKLIEIAP 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T +   H++    +E IA AK EI     KT    +  +  F+ LL    H  G
Sbjct: 187 PDIAIVTALELVHVAGVHSLENIAHAKREILTH-PKTMLGLIPSEIPFYALL----HETG 241

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLG 301
                SF   S  AD+ LR+     +Q       QG S  +     +G H   N L  + 
Sbjct: 242 TCRKQSFSTLSIQADYCLRE----QDQHLQIRDSQGLSPLLPRLPFLGKHNQHNFLAAIS 297

Query: 302 IVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               L    +D+   I  L++  P+    +R    + +G    I++SYNA   S+KAA+ 
Sbjct: 298 ACRALGMTWSDIQQVIPTLTL--PE----RRLEQVIKKGIL-FINDSYNAALTSVKAALD 350

Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            L    Q S    G+RI V+G+M E+G  S++ H ++  +LSL  +  +   G   L ++
Sbjct: 351 ALPPPLQFS----GKRIGVIGEMVELGTFSEACHREVG-ILSLAKLDLMICYGDGCLPIE 405

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +   + +  VH + T + +   ++  ++ GDVV++K SN    ++++ 
Sbjct: 406 EVWKKHNKPVHLTLTFEQVIAELKQHVLPGDVVLLKGSNKKQLWKVLE 453


>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 209/442 (47%), Gaps = 21/442 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + IDSR +   + FF I+G ++DGH+F+  A   GA  VVV+  M         P  
Sbjct: 26  IAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDAGAVAVVVSQFMPEFEDK---PTI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D + AL ++A   R++S A +IA+TGS GKTT KEML   LS     +    + NN 
Sbjct: 83  MVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVKEMLAHVLSGSGSVHKNFMNLNNQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PL++     +  + + ELG+S   ++  L  + +P +A++  I PAHL     +E +
Sbjct: 143 LGLPLSMLEATGEETYWVMELGISLPHDMGELGPIAQPDMAIVHNIGPAHLEGLGSLENV 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K+ +F+ +   G      D    ELL   ++ +     +S  + +NA++        
Sbjct: 203 ADQKSSLFKYIRPEGVALCCKD---HELLWEAANKISKPVPFS-SQDENAEYYSTLLHTL 258

Query: 267 SEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPKE 324
            + S    ++   ++ EV+    G H A+N          L  ++ + A +  +V  PK+
Sbjct: 259 PDGSGRFLIKAGEETAEVILPTCGSHFAENAAAVTCAAHQLGMELTEIAERLATVELPKQ 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+ C    G +TLID+SYNANP SM  AI    +I+   +   + VLGDM E+GE 
Sbjct: 319 ----RFHCH-THGKWTLIDDSYNANPLSMNRAIDTAKRIA--DDRPLVLVLGDMLELGEE 371

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   H DL   ++       +  G H   +      S  V   + ++ L    +  L D 
Sbjct: 372 AGCAHCDLGSKIAETKPDATFYHGKHYSEVASQTNGSTLVPVKQPIEFLNGIHELGLSDA 431

Query: 445 DVVVVKSSNSCG----FYRLIN 462
            VV+ K S SC     FY L N
Sbjct: 432 -VVLFKGSRSCHMEDYFYALNN 452


>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
 gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
          Length = 448

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 178/384 (46%), Gaps = 18/384 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+ +A  G  IG      +N +  D+R I     F A+KG  +DGHD+I  AVQ+GA
Sbjct: 6   TLSDIAKACDGELIG--EDCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQAVQEGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V V +D V  + +  + VF      G + +L    R   K  ++ ITGS GKTT K+ 
Sbjct: 64  --VGVVSDRVVDVPNY-VKVFDTTLAYGVIARLI---RDAFKGPVVCITGSNGKTTVKDW 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L  +L+  K       + NN IGVP TL  +  D D  + E G S  GEI  L  +  P 
Sbjct: 118 LAQSLTD-KNVLKTRANLNNQIGVPQTLLELDADNDVAVIEAGTSFTGEIPLLAKVAFPD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T    +H     GIE+IA  K  +  G     ++ LN DD +F+     +   G +
Sbjct: 177 IVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNASVVLNSDDEYFDYWCGLA---GDR 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +YSFG +++AD      +  +E S       G +  V   G G H   N +    ++++
Sbjct: 234 QVYSFGFTESADLYASDIELGAESSLAMFHYDGMAQLVTIAGAGKHQIANGMAV--VLAM 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D    A  +  P    G+  R     G   LI++ YNA+P S++AAI VLS  S 
Sbjct: 292 LIIGIDFKQAADKLASPVLVSGRLERLKTKNGAL-LINDCYNASPKSVEAAIDVLSIQSV 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH 389
                   +LG + E+G      H
Sbjct: 351 E---ETWLILGGLAELGAQRDDIH 371


>gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
 gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
          Length = 452

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 184/369 (49%), Gaps = 16/369 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF   A   GAG ++V+  +     +  +P  
Sbjct: 24  IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +    ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  +  + + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL + G   LN D++ +   +A    +G + ++ F   + N+DF     + 
Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +Q    +++V+    G H   N L    +   + AD+      L+      G
Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R   +Q    L+D+SYNAN  SM AA+ VLS++     G R  V+GDM E+G  S
Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRAMVVGDMAELGAES 368

Query: 386 QSFHIDLAE 394
            + H ++ E
Sbjct: 369 AACHREVGE 377


>gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
 gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
          Length = 461

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 219/472 (46%), Gaps = 50/472 (10%)

Query: 5   WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKG------------ 48
           ++  ++ + + G  I I      + FV+ +  DSR I     F  I              
Sbjct: 3   YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62

Query: 49  ---PHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVA 101
                 DGH FI  A++ GA         VAS    I   S+P+  V D   AL  LA  
Sbjct: 63  YTIAEKDGHKFINSALKNGA---------VASFADHIVQTSLPLILVSDTQLALWALAKN 113

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
              +     IA+TGS GKTTTK+++   LS   K +  + S NN IGVP T+  MP D +
Sbjct: 114 YLNKINPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTE 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+GM HLG++  L+ ++ P+IA+IT I  AH+  F   ++IA AK EI +GL+K G
Sbjct: 174 IAVIEMGMDHLGQLTALSKMLEPNIALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDG 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKS 280
           T   + D+    LLK ++     + + +FG+ ++ +F    W  Q  ++  +  ++  ++
Sbjct: 234 TFIYDGDEI---LLKERADLFSGEKV-TFGEKESNNF----WVSQIEDKKRLSFKVNQET 285

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V  + +G   A N    + +         T  +        + R +    +  +   T
Sbjct: 286 YSV--NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGE---T 340

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + YN+NP +   AI +L       +G++I VLGDM E+G+   S H+ L   +    
Sbjct: 341 IISDVYNSNPTAAIKAIEILKDFPT--QGKKILVLGDMLELGDQEVSLHLALKAPIERAA 398

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+L G  + +L  A+      +    +  L   +QSSL   DVV++K+S
Sbjct: 399 FDEVYLVGPIMKSL--AVKMQARWYDKAFLTDLSRDLQSSLSKNDVVLLKAS 448


>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 321

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 162/329 (49%), Gaps = 62/329 (18%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +W    L +A+     GI    F+N   +  +S+ +   + F A++G   DGHD++L A+
Sbjct: 2   IWNSETLNKAL-----GITISNFINCNEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAI 55

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  V+V+  +  +       +  V+D   AL K+A+  R  SKA  IAITGSVGKT+
Sbjct: 56  DKGAVAVIVSKQIDIADKD---KIILVEDCFEALQKMALYKRENSKAKFIAITGSVGKTS 112

Query: 122 TKEML-------------------------------TIALSSIKKT-------------- 136
           TKE L                               T A + +++               
Sbjct: 113 TKEALKTLLTEANYKSLDLLYNEANKEEFEGNTERSTAAYTLVREDVSTGLTYKLPLEAS 172

Query: 137 ------YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                 +A  G++NNH+G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT
Sbjct: 173 YIRGLIFASRGNFNNHLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 232

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I+ AHL  F+  EEIA AK EIFE   K     +N D + +  + +    L I  I+SF
Sbjct: 233 NISEAHLEFFNSFEEIAEAKCEIFENFSKNDIAVINADTNCYNKILSILKKLSITDIHSF 292

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G+S     +L  ++   EQ +++ ++  K
Sbjct: 293 GRSSKTSAELVLYENLGEQVYLKYKINNK 321


>gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
 gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
          Length = 470

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 176/377 (46%), Gaps = 35/377 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F AIKG  +D HDF+    ++    V+V      +  + S+P   V 
Sbjct: 29  VSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV----ARTPENWSVPAIRVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL  LA   R +    ++A+TGS GKTT KEM+     A        A  G++NN 
Sbjct: 85  DTREALGALARGWRRQFDLPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL R+       + ELGM+H GE   L  L  P +AV+      H    + +E +
Sbjct: 145 IGLPLTLFRLHAAHRLAVVELGMNHPGETEQLAKLAEPTVAVVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   GT     DD++  + +    A G + I         DF L   ++ 
Sbjct: 205 ALEHASVIHALSPEGTAVFPADDAYASIWRVA--ATGNRII---------DFALNNAERT 253

Query: 267 SEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +E + ++    GK          ++V    +G H A N L            +D   + L
Sbjct: 254 TEAA-VQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNALAATSAALAAGVSLDAIQRGL 312

Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375
             F   +GR +  + AL      T+ID++YNANP SM+AAI VL S+ SP     R+ V+
Sbjct: 313 ESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDVLASRESP-----RVLVM 367

Query: 376 GDMCEMGELSQSFHIDL 392
           GDM E+G+    FH ++
Sbjct: 368 GDMGEVGDNGPVFHREI 384


>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 458

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 204/473 (43%), Gaps = 27/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +  A  G      P   V G++ DSR   P + F A+ G   DGHDF   A
Sbjct: 1   MQPL-SLAQIATATGGRVTDADPATQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGK 119
           V+ GA  V+           L +P   V+D L AL   A A     +   +IA+TGS GK
Sbjct: 60  VEAGAVAVLAAR-------PLGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   L     T    GS+NN IG+PLT      D    + E+G    G I +LT
Sbjct: 113 TSTKDLIAQVLDRAGATVFTQGSFNNEIGLPLTALEATADTRHLVVEMGARGQGHIAYLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLK 236
            +  P I  +  +  AH   F G +  A AK E+ E L    + G   LN DD     + 
Sbjct: 173 GITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMS 232

Query: 237 AKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A++ A     + +FG  + AD +          ++   +        V    +G H   N
Sbjct: 233 ARTKA----EVVTFGVERAADVYATGVALDGRGRASFTLHTPAGQAPVRLQVVGEHQVPN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            L    +      DV+    AL+   P  EG   R R        T++D++YNAN  S  
Sbjct: 289 ALAAAAVAGAAGMDVEQIGGALTAAVPVSEG---RMRVTERPDGVTVVDDAYNANTDSTS 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSGFHV 411
           AA+  L+ +     GR IA+LG+M E+G+ S+  H     LA  L +  +  V  +  H 
Sbjct: 346 AALRALAHLGRESGGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVGRAEAHA 405

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           LA  D       V       G +L  +  L  GDVV+VK +N+     L + L
Sbjct: 406 LA--DEYGPGGQVVADRDAAGEWLE-RYGLRAGDVVLVKGANALKLGELADAL 455


>gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 464

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 183/387 (47%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQTFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +++    +G H   N L    +   + AD+      L
Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIKINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 + +G+ Y   +N      ID++YNAN  SMK+A+SVL          RI  +GD
Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G+ S++ H  +A+ +   N+  V
Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395


>gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           L20]
 gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 464

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 182/387 (47%), Gaps = 23/387 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   S D+R       FFA+KG ++D H ++ +AV++G+  VVV  +       +S+P 
Sbjct: 24  LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139
             V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC      
Sbjct: 79  IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135

Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP+TL R+     F + ELG +H+GEI + T + +P   ++  +A AHL 
Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257
            F  +E +A AK EI+ GL+  G   +N    + +  K    H L   +     +   AD
Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F     +     S   +      +E+    +G H   N L    +   + AD+      L
Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 + +G+ Y   +N      ID++YNAN  SMK+A+SVL          RI  +GD
Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           M E+G  S++ H  +A+ +   N+  V
Sbjct: 369 MAELGGESEACHQQVADFVREANLDLV 395


>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 438

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 204/443 (46%), Gaps = 25/443 (5%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V+  SIDSRS  P + F  I     DGHDFI  AVQ GA + + +     ++G+ +
Sbjct: 19  PDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAPVYLTDRAPDPALGATA 77

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + V    D   AL  L    R     +++ +TGSVGKT+TK++L   L +  +T A   S
Sbjct: 78  VQVA---DTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLLAGVLGTTFRTAASEKS 134

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN +G+PLTL   P D +  + E+G   +G I  L  +  P + V+T +   HL  F  
Sbjct: 135 FNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSIASPTVGVLTRVEAVHLEMFGS 194

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++++A AK E+ E L   G   LN D      + +++ A     + ++G    AD +   
Sbjct: 195 LDDVAQAKGELVEALPADGLAVLNADHPVVAAMTSRTSA----RVLTYGVDPGADVRATD 250

Query: 263 WKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                E ++   +     +  V     G H   N L        +   ++   + L   +
Sbjct: 251 IVLDDELRASFTLHSPWGTTAVRLGARGEHQVSNALAAAAAGGGIGVPIEKIAEGLLGAN 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                G R   +      T+I+++YNANP SM A +S L++I     GRR AVLG M E+
Sbjct: 311 LS---GLRMELSTTAAGVTIINDAYNANPTSMAAGLSALARID---AGRRFAVLGTMAEL 364

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S + H ++A+         V L G  V+A+ +    +   H S  +DG    +   L
Sbjct: 365 GDDSAAAHREVAD-------QAVAL-GVTVIAVDEPAYGAGVTHVS-GVDGAVDAL-GDL 414

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             GD V+VK S      R+   L
Sbjct: 415 RSGDAVLVKGSRVAALERVAQAL 437


>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 453

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KG
Sbjct: 4   LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A + +V+ ++   +  L   + +  V +   AL  LA   R +    ++ ITGS GKT+T
Sbjct: 64  AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  + 
Sbjct: 123 KDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    + +
Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +KT    G  +N     +        S   V    K  E      G H   N+++ + I
Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L      E    R       G F+++++ YN++P ++K+AI V+  
Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+      
Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V+  E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 411 TVY--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
 gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
          Length = 474

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 209/452 (46%), Gaps = 31/452 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR + P   F A +G H DGHD+   AV             V +   + +P   V 
Sbjct: 31  VVIDSRQVEPGSLFAAFEGEHVDGHDYAGRAVAA-------GAVAVLAARPVGVPAIVVP 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  AL  LA     R    ++A+TGS GKT+TK+++   L     T    GS NN IG+
Sbjct: 84  DVEKALGALARTVVERLGTDVVALTGSAGKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT  +   +    + E+G   +G I +LT L  P I ++  +  AH+  F G E IA A
Sbjct: 144 PLTALKATAETRHLVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREAIAQA 203

Query: 210 KAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           K E+ E L    + G   LN DD     + A++ A   +T+  FG++++AD +  + +  
Sbjct: 204 KGELVEALPSEAEGGVAVLNADDLLVRAMSARTKA---RTVL-FGEAEDADVRATEVRMT 259

Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + Q    +       +V     G H   N L    +  +L    +    ALS      G
Sbjct: 260 PAGQPSFTLHTPTGCSDVTLRLYGEHHVSNALAAAAVAHVLGMPAEEIATALS----GAG 315

Query: 326 RGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCE 380
              R+R  +   +   T+++++YNANP SM+AA+  L  +   G+   GR  AVLG M E
Sbjct: 316 TLSRWRMEVTEREDGVTIVNDAYNANPESMRAALRALVAMGEAGKADGGRTWAVLGPMAE 375

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLF 434
           +G+ S + H  +  +    N+S +   G        + A  +       V  S+    + 
Sbjct: 376 LGDDSLAEHDAVGRLAVRLNVSRLVAVGGREASWLQLGAYNEGSWGEESVLVSDAQAAVD 435

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L ++S L  GDVV+VK+S S G  R+   LL+
Sbjct: 436 L-LRSELRPGDVVLVKASRSVGLERVALALLD 466


>gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
 gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 211/441 (47%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G     V  V+
Sbjct: 16  VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDTRYIV--VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  NSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I   
Sbjct: 134 PLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGIIKT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L   K  TIF++ D+ + + +    H +   +   +Y  G  + N+ +   +W
Sbjct: 194 KGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSEDGLYINGHVTGNSPYLTFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K  +E  + EVQ +          IG +   N L  + I      + +   KAL+ + P+
Sbjct: 254 KTDNESKYHEVQTR---------LIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM A+IS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAE---NKMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +A+ L       V L G    A      R  +  Y + +  L   +Q     
Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAAT-----RHSYQSYPD-VTALIAELQREKPC 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      ++  L
Sbjct: 412 GKTILIKGSNGIKLSSVVEYL 432


>gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
 gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
          Length = 433

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 187/383 (48%), Gaps = 19/383 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  ++G+ F   A++KG    +++    A  G+  + +  V 
Sbjct: 16  ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEGNDRLIL--VK 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  K+A   R      +I ITG+ GKTT+KE+++  LS         G++NN +GV
Sbjct: 74  DALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNVGRAHLEGFGSFEGVKLT 193

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ L+     +FLN  +     + A+ +    + I S+G++   + Q  +   C+ 
Sbjct: 194 KGELYDYLKANDCLLFLNESNPDLSEMAAQRN---FERIISYGQNDMVNVQ-GEIIDCAP 249

Query: 268 --EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                W EV  + K  EV+ H +G +   NML  + +    +        AL  + P   
Sbjct: 250 FLHFRWREVGSEWK--EVMTHLVGAYNLDNMLAAIALGLHFSVAPQQICHALETYVPSNN 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N+    L+ ++YNANP+SM AAI     ++      ++A+LGDM E+GE++
Sbjct: 308 RSQLTETVHNK----LVVDAYNANPSSMVAAIENFRLMNVEN---KMAILGDMRELGEVT 360

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
              H  + E L    +++VWL G
Sbjct: 361 DVEHQKVVEQLKAAGLTNVWLVG 383


>gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 459

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 186/375 (49%), Gaps = 24/375 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR       FFA+KG ++D HD+++ A ++G    VV      +I  L     
Sbjct: 25  VENVSTDSRKAVNNGLFFALKGENFDAHDYVMKAAEQGCVAAVVEHPTEGNIAQLI---- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +    ++A+TGS GKTT KEM    L      +  +    G+
Sbjct: 81  -VKDSRLALGQLAKWLREKINPKVVAMTGSSGKTTVKEMTASILQQCAVDFDDVLFTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H+GEI + T L +P +A++  +  AHL  F  
Sbjct: 140 FNNDIGVPLTLLRLTEKHKFAVIELGANHIGEIAYTTALAQPDVALVNNVMAAHLEGFGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261
           ++ +A+AK EIF GL   G   +N   ++ +  + +   +G   +  F   +  ADF   
Sbjct: 200 LDGVATAKGEIFRGLTHHGVAIINQAHNYQQKWQKE---IGQHEVQYFSYDNPQADFYAE 256

Query: 262 KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              Q SEQ  S++    QG ++++    +G H   N L    +   + A +    K L  
Sbjct: 257 HI-QFSEQGASFVLHTPQG-NVQIDSPYLGEHNVSNALAATALAMNVGATLAQVKKGLET 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P   +G+ +          L+D++YNAN  SMK+AISVL +        R+ V+GDM 
Sbjct: 315 --PSLVKGRLFPIHPCDNLL-LLDDTYNANVGSMKSAISVLQKYPAF----RVFVVGDMG 367

Query: 380 EMGELSQSFHIDLAE 394
           E+G+ +   H ++ E
Sbjct: 368 ELGDNTPLCHQEVGE 382


>gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 452

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 179/364 (49%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA A R      +  ITGSVGKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
 gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 208/430 (48%), Gaps = 30/430 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G     V  V+
Sbjct: 16  VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDTRYIV--VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  NSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I   
Sbjct: 134 PLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGIIKT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L   K  TIF++ D+ + + +    H +   +   +Y  G  + N+ +   +W
Sbjct: 194 KGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSEDGLYINGHVTGNSPYLTFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K  +E  + EVQ +          IG +   N L  + I      + +   KAL+ + P+
Sbjct: 254 KTDNESKYHEVQTR---------LIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM A+IS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAE---NKMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +A+ L       V L G    A      R  +  Y + +  L   +Q     
Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAAT-----RHPYQSYPD-VTALIAELQREKPC 411

Query: 444 GDVVVVKSSN 453
           G  +++K SN
Sbjct: 412 GKTILIKGSN 421


>gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
 gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis CU385]
 gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
          Length = 439

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 25/368 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 8   VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 64

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 65  --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 122

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+   F 
Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 182

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 183 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 243 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 298

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 349

Query: 380 EMGELSQS 387
           E+GEL + 
Sbjct: 350 ELGELGED 357


>gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 503

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 22/373 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V   + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             V +   AL ++A A+  R +AT ++A+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VVVKNTELALARIA-ASMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNAD 257
              +  +A  K  I+  L   G   +N DD+F    + +  A  +  + I  +G    AD
Sbjct: 198 LCSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPVQGRRIVRYGLQIGAD 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ + Q     +  V  QG++ +V     G H   N L   G+       +      
Sbjct: 258 ITARQLQLQAGATQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLALGAGIALPVIAAG 316

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+  HP  GR  +    L  G   LID+SYNANP S+ AAI  L+     GEG    VLG
Sbjct: 317 LAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 369

Query: 377 DMCEMGELSQSFH 389
           DM E+G    + H
Sbjct: 370 DMRELGAEGLALH 382


>gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58]
 gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria
           meningitidis MC58]
          Length = 455

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 25/368 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGELSQS 387
           E+GEL + 
Sbjct: 366 ELGELGED 373


>gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia proteamaculans 568]
 gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia
           proteamaculans 568]
          Length = 453

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 210/455 (46%), Gaps = 44/455 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R +     F A+KG  +D HDF + AV  GAG ++V+  ++     + +P   V 
Sbjct: 27  VTTDTRQVTTGCLFVALKGERFDAHDFAVDAVAAGAGALLVSKRLL-----VEVPQLVVK 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +    ++A+TGS GKT+ KEM    L    +     G++NN IGV
Sbjct: 82  DTRLALGQLAAWVRQQVPTRVVALTGSSGKTSVKEMAAAILRECGEVLYTAGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267
           K EIF GL   G   LN D++ +   ++    L  KT++ F    ++  DF         
Sbjct: 202 KGEIFAGLPADGVAILNADNNDWPHWQSM---LDGKTVWRFSPQAAEGVDFFAS------ 252

Query: 268 EQSWMEVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                +VQ+ GK  +   H             G H   N L    +     A ++   + 
Sbjct: 253 -----DVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALAAAALAMSAGASLEAVRQG 307

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L       GR   +  AL+     L+D+SYNAN  SM AA  VL+++     G R+ V+G
Sbjct: 308 LKQLQAVPGR--LFPIALSDHQL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVG 360

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF-- 434
           DM E+G  ++  H  + E   L  +  V   G     L +A     H      +      
Sbjct: 361 DMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQVLTEASGNGEHFQDKAAVIARVAE 420

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           L  + +++    V++K S S    +++  L E+ P
Sbjct: 421 LLSEHAVI---TVLIKGSRSAAMEQVVRALQEKAP 452


>gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
 gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
          Length = 476

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 23/389 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+ KG    +V+    A  G+    +  VD
Sbjct: 51  VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAGNNRFIL--VD 108

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A  +LA   R      +I ITG+ GKTT+KE+++  L+   K +  +G++NN IGV
Sbjct: 109 NALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNNDIGV 168

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  M  D +  + E+G SH  +I  L   V P   +IT +  AHL  F   E + + 
Sbjct: 169 PRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKNT 228

Query: 210 KAEIFEGLEK-TGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQ-------- 259
           K E+++ L+     +FLN  +    E+ + +      + + ++G+   AD +        
Sbjct: 229 KGELYDYLKAHNALLFLNESNPDLVEMAEQRE----FERVITYGQDNTADVKGEVVSCAP 284

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           L K+   + QS    Q+     EV  + IG +   NML  + I      +      AL  
Sbjct: 285 LLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHFGVEPQKICHALES 344

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           + P   R +      N+    LI ++YNANP+SMKAAI     +       ++A+LGDM 
Sbjct: 345 YVPSNNRSQLTETKDNK----LIVDAYNANPSSMKAAIENFRLMDIKN---KMAILGDMR 397

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           E+G+++   H  + + L    + +VWL G
Sbjct: 398 ELGDVTAEEHQRVVDELIASGLENVWLVG 426


>gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 187/380 (49%), Gaps = 21/380 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR       FFA+KG   DG+ F   A+ KGA   V++           + V   +
Sbjct: 21  VSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDNPRYYQEDERYLLV---N 77

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    IIAITGS GKTTTKE++   LS     YA  G++NNHIGV
Sbjct: 78  DTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGNFNNHIGV 137

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P++L  +    +  + E+G +H+GEI  L  +V+P   +IT I+ AHL  F GI  +   
Sbjct: 138 PISLLSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNISHAHLEGFGGINGVIKG 197

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  L++ G + F+N  DS   LL   +    +  IY     +  D+   + K   E
Sbjct: 198 KSELYTYLKQHGGVPFINSADSV--LLNVANGF--VNPIYY---PQKGDYYYCELK---E 247

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   V    +S  V    IG H   N+   L I      + +    A+  ++P   R +
Sbjct: 248 ANPYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMVNTAIQAYNPSNNRTQ 307

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                + +G  +++ ++YNANPAS++AA+   S +       ++ +L DM E+GE S +F
Sbjct: 308 ----LIKKGTNSILLDAYNANPASVQAALESFSFLK---SMYKVLILADMNELGEESLAF 360

Query: 389 HIDLAEVLSLYNISHVWLSG 408
           H  + E  +  +   + L G
Sbjct: 361 HQAIIEKTAQQDYDAILLHG 380


>gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK330]
          Length = 456

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 210/441 (47%), Gaps = 29/441 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F  +KG   DGHDFI  A  +GA   +    +      L      VDDVL
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGTYIL------VDDVL 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            +  +LA     + +  ++A+TGS GKTTTK+ML   L++  KTY   G+YNN IG+P T
Sbjct: 85  TSFLRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  MP D +  + E+G  HLG+I  L+ L +P   ++T +  AHL  F    EIA  K +
Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +GL K G + +  D    E L A         +  FG   +AD  L + ++  +    
Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     + +++   G  Y+    M+     +    ++   A +A S       R + ++ 
Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGISEAAIA-QAFSELELTRNRTE-WKK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N     ++ + YNANP +M+  +   S I  +  GR++AVL DM E+G  S+S H  +
Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPTNLGGRKLAVLADMKELGADSKSMHGSM 371

Query: 393 AEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHY-----SETMDGLFLFIQSSLVD 443
              L+   ++ ++L G  + AL    K+  P    +++      +  + L   ++  L  
Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPGKVLYFIKNDEKDQFEQLTKAVREKLTP 431

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            D +++K SNS    +L+  L
Sbjct: 432 TDQILLKGSNSMNLAKLVEDL 452


>gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 205/462 (44%), Gaps = 56/462 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           +    IDSR  +    F A++G   DGHDFI  A  +G    +V    +A    L +   
Sbjct: 30  IRSACIDSREASVDGLFVALQGERVDGHDFIAAAAARGVRAALVQRGRLADPSQLGLDRP 89

Query: 85  ---------------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                                +  VD  L A+++LA   R +    ++ ITGSVGKT+TK
Sbjct: 90  FVLLDPDQGQIANEAPANAFFLISVDQTLTAMHRLATRYRQQQDLVVVGITGSVGKTSTK 149

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L+   +T+    SYN+   +PL +  +  +    + E+G+ + G++  LT + +
Sbjct: 150 EVLAAMLAPTMRTHKSPRSYNSENTLPLVVLGIEPEHQIAVLEMGIYNKGDLALLTTIAQ 209

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I ++T +  +HL     IE +A AK+E+ + L   G   LNYDD     ++  + A  
Sbjct: 210 PQIGIVTNVGASHLERMHTIENVAEAKSELVQALPADGWAILNYDDQRVRAMQQVTKA-- 267

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWM-----EVQLQGKSMEVVHHGIGYHMAQNMLM 298
              ++++G    AD     W    E   +     +   +G+   +    IG H     L 
Sbjct: 268 --QVFTYGLDPEADL----WADNIESRGLDGIGFDAHYRGEQWHIKLPLIGLHSVHTALA 321

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +  +L    D+ I+ L     +     R       G  TLID++YNA+P S  AA++
Sbjct: 322 AAAVGIVLGLSWDSLIQGL-----RSSAQLRLLSYPAVGGATLIDDTYNASPVSCIAALN 376

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHV 411
           +L+++    +GRRIAV GDM E+G   +S H        D+ + L +      W+     
Sbjct: 377 LLAEL----QGRRIAVFGDMAELGPHDESGHRLVGVRAADVVDQLYVVGEKARWIGEE-- 430

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            A++  LP    VH       L   +QS+L   D V+VK S 
Sbjct: 431 -AIEVGLPAE-QVHVLPDKAALIAALQSTLQANDYVLVKGSR 470


>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
 gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
          Length = 457

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 205/448 (45%), Gaps = 20/448 (4%)

Query: 21  IVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           I+ QG  N     I  D+R+I     F A++G  +DGHDFI  AV  G   V+V+ D   
Sbjct: 17  ILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIVD-DAGR 75

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                   +F V + L A   LA+  R R    ++A+TGSVGKT+T+ ++   LS     
Sbjct: 76  LYPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTSTRSLIATVLSQKYNV 135

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                ++NN IG+P TL ++  +    + E+GM  LG+I+ L  +  P I V+T +  +H
Sbjct: 136 LQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGLGQIKELADIAEPTIGVVTNVGKSH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +        IA AK E+ E L   GT  LN DD     +  K      KT+ SFG  +NA
Sbjct: 196 IELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRVAAMAEKCKG---KTV-SFGIKENA 251

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                  K   +      +   + M+V    +G H   N L  + +  +L        K 
Sbjct: 252 PVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVYNALAAVAVGRLLGMSEHQMQKG 311

Query: 317 LSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L+ +     +G   R  L +    T I+++YNANPASM  A+  L  ++    GR+IAVL
Sbjct: 312 LAEY-----KGVPMRQELIHLEDLTFINDAYNANPASMAEAVHTLMSVAS---GRKIAVL 363

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGL 433
           G M E+G+ +++ H  +  +L+      +   G     + D   +    +V+   T    
Sbjct: 364 GGMLELGDWTKAEHEKIGALLAAEKADALIALGDEATYIADGAEQKGMKNVYKVRTHKEG 423

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              ++   V GD +++K S      +++
Sbjct: 424 AEILRKIAVAGDTILLKGSRGFAMEKIL 451


>gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha275]
 gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 452

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA   R      +  ITGSVGKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 222/458 (48%), Gaps = 44/458 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P   F AI G   DG DF   AV  GA LV+   ++        +PV  VDDV 
Sbjct: 32  DSRLVEPGALFAAIPGARVDGADFAAGAVADGAVLVLAAREID------GLPVVVVDDVA 85

Query: 93  GALNKLA--VAARLRSK---ATIIAITGSVGKTTTKEMLTI-----ALSSIKKTYACIGS 142
            AL  LA  V  RLR+      + +ITGS GKTTTK++L       A      T A  GS
Sbjct: 86  AALGDLARVVLERLRAANPAVKVFSITGSAGKTTTKDLLGRLVAGEAADGGSDTIAPTGS 145

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ IG+PLT+ R        + ELG    G+I +L  +VRP IAVI  +  AH+  F  
Sbjct: 146 FNSEIGLPLTVLRGTAATRKLVLELGADKPGDIGYLASIVRPQIAVILMVGTAHIEFFGS 205

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA AKAE+  GL   GT  LN DD     L  ++ ALG + + +FG+  +AD +   
Sbjct: 206 QEAIADAKAEVLGGLVPGGTAVLNADDERVLGLAPRATALGHR-VVTFGRVPSADVRAED 264

Query: 263 WK-QCSEQSWMEVQLQGK-----------SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                + ++   ++++G+            + V    +G H   N L       +     
Sbjct: 265 VTVDATGRASFTLRVRGRVAAAGEVADDLRLPVSLRLVGEHHVSNALAAATAAILAGTAP 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               + LS   P    G  +R A+ +     T++D++YNANP SM+AA+  ++ ++  G 
Sbjct: 325 SVVAERLSAAEP----GSPHRMAVTERPDGITVVDDAYNANPESMRAALRSVAVMA--GR 378

Query: 369 GRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422
            RR +AVLG+M E+GE +++ H  +  ++   NI  + + G      H  A+++      
Sbjct: 379 TRRSVAVLGEMRELGEGARAAHDAIGRLVVRLNIKLLVVVGDGAYHIHEGAMQEGSWGEE 438

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            V +   +D     +   L  GDVV+VK+SN  G ++L
Sbjct: 439 TV-FVPDLDAARAELAERLRPGDVVLVKASNGSGLWQL 475


>gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
 gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
          Length = 436

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 218/440 (49%), Gaps = 29/440 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG ++DG+ +   A++ GA  V+V+   V   G     +  V 
Sbjct: 17  ITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVDNPEVVIEGDDRYIL--VH 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL ++A   R   K  IIAITG+ GKTTTKE++   L    KT+   G+ NNHIGV
Sbjct: 75  DSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNLNNHIGV 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M    +  + E+G +H GEI+ LT +V P   +IT +  AHL  F  +E +   
Sbjct: 135 PLTILSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNVGKAHLEGFGSLEGVIRT 194

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQ 265
           K+E+++ L  +K GT F+N+DDS   L+K    A GI  + ++G S++     ++     
Sbjct: 195 KSELYDYLKEKKNGTAFINFDDSI--LMK---QAEGISHLITYGTSESTSVCGKIDDSSL 249

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                W +  L      +    IG +   N+L  + I       ++   +AL  + P+  
Sbjct: 250 TLSLEWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDIKEALEQYTPQNN 309

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   NQ    LI ++YNANP SM AA++    +       ++ +LGDM E+G+ S
Sbjct: 310 RSQFKKTESNQ----LIIDAYNANPTSMLAALNNFCNLKAE---HKMVILGDMRELGKDS 362

Query: 386 QSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442
              H  + + L+ + +I  V L G       D   ++ H   H+ +  +     + + + 
Sbjct: 363 LLEHQKIIDFLTKHKDIEKVLLVG-------DEFCKTNHPYTHFKDVNEVKNYLVSNPIT 415

Query: 443 DGDVVVVKSSNSCGFYRLIN 462
           D   +++K SN    + L++
Sbjct: 416 D-HTILIKGSNGIRLFTLVD 434


>gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 432

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 211/441 (47%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G     V  V+
Sbjct: 16  VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEGDTRYIV--VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  NSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I   
Sbjct: 134 PLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGIIKT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L   K  TIF++ D+ + + +    H +   +   +Y  G  + N+ +   +W
Sbjct: 194 KGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSEDGLYINGHVTGNSPYLTFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K  +E  + EVQ +          IG +   N L  + I      + +   KAL+ + P+
Sbjct: 254 KTDNESKYHEVQTR---------LIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM A+IS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAE---NKMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +A+ L       V L G    A      R  +  Y + +  L   +Q     
Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAAT-----RHSYQSYPD-VTALIAELQREKPC 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      ++  L
Sbjct: 412 GKTILIKGSNGIKLSSVVEYL 432


>gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640]
 gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06]
          Length = 452

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 176/363 (48%), Gaps = 23/363 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  AS+        
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143
            VDD L AL  LA A R      +  ITGSVGKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGNDAVLATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A+      AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNAMRAHIGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + K
Sbjct: 200 VGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFKTATLNLNTRTFGIDSGDVHAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGNERAAVVLPVPGRHNVHNAAAAAALALAAGLGLNDVAEGLKGFSN 315

Query: 323 KEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM E
Sbjct: 316 IKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGE 366

Query: 381 MGE 383
           +GE
Sbjct: 367 LGE 369


>gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
 gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
          Length = 467

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 222/496 (44%), Gaps = 67/496 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G    +   G  V  + +DSR +     F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV               S+G    P   V D   AL  LA   R  + AT++A+TGS GK
Sbjct: 60  AVAA----GASAVLAARSVGE---PAVIVPDPPSALAALAAYVRDLAAATVVAVTGSAGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L  +  T A  GS+NN IG+PLTL R   D  F + E+G    G I  L 
Sbjct: 113 TTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGPGHIATLC 172

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + RP + V+  +  AHL  ++ G   IA+AK E+ E   +   + LN DD     +  +
Sbjct: 173 AVARPAVGVVLNVGSAHLGEYADGRLGIAAAKGELAEAASE--AVVLNADDPLVAAMAVR 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG---------I 288
           + A     + +FG+   AD +            ++V   G+ S +++ HG         +
Sbjct: 231 TTA----EVITFGEGGRADVR---------AGAVDVDRLGRASFDLLAHGEHHRVTLGLV 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESY 346
           G H   N L    +   L    D    ALS   P+     R+R  +        +++++Y
Sbjct: 278 GAHQVPNALAAAAVAIRLGLSPDRVAAALSAARPR----SRWRMEVTSTAAGVVVVNDAY 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP SM+AA+  L  +   G+GR  AVLG M E+G+ + + H    +VL  +    V L
Sbjct: 334 NANPESMRAALKALVDM--RGKGRAFAVLGPMGELGDAAAAEH----DVLGRF---AVRL 384

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------------GDVVVVKSS 452
               ++A+    P + H+H   +++G +      + D               DVV+VK+S
Sbjct: 385 GVDRLIAVG---PAARHIHLGASLEGSWDGESVEVTDAEEAVALVAAQAGPDDVVLVKAS 441

Query: 453 NSCGFYRLINLLLEEF 468
            S G  R+   L+  F
Sbjct: 442 RSFGLERVAEALVTRF 457


>gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
 gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
          Length = 462

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 216/487 (44%), Gaps = 70/487 (14%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +   SIG+     +N IS +S  I  +  F A+ G  YDGHDFI  AV  GA  V+VN  
Sbjct: 13  LNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAVMAGAQAVLVNRY 72

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +     S+++P   V D   AL K+A   R R  + +IAITGS GKT+ K M    L + 
Sbjct: 73  V-----SVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKTSVKNMTVSILKNC 127

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               +  G+ NN IGVP+TL  +    DF + ELG + LGE+  L+ +V   +A++  I 
Sbjct: 128 GTVVSTQGNQNNLIGVPITLLNLTYQSDFAVIELGSNQLGELNKLSKIVAADVALVNNIF 187

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +HLS F  ++ I   K EIF GL   G + +N D                         
Sbjct: 188 ISHLSGFRSLKSIQQEKGEIFSGLACNGQVVINGDS------------------------ 223

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSME-------VVHHGI------------------ 288
            NA F      Q  ++ W  + ++ K M+       +  HG+                  
Sbjct: 224 -NAVFMWNSMLQLKKRWWFSIYVK-KEMDFFANNICIYPHGVRFILSSPYGVAPVFLSIL 281

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    +   + A++   +  L    P  GR   Y   LN G   L+D++YN+
Sbjct: 282 GRHSVSNALAASALAFSVGANLSEIVYGLQNIQPLPGR--LYPILLNDGKLLLLDDTYNS 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWL 406
           N  SM  AI+VLS + P   G RI V+ DM E+GE  ++  +H  +A ++S   I  +  
Sbjct: 340 NVGSMIEAINVLS-VMP---GYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILT 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFL---FIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            G     +        H H    +    L     Q++ +    ++VK S S    R++++
Sbjct: 396 IGNISYLISKNCKEGKHFHNKNKLIRYLLNNILFQNTYIS---ILVKGSRSFQMERIVDI 452

Query: 464 LLEEFPA 470
           + ++F  
Sbjct: 453 IRDQFEC 459


>gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
 gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
          Length = 448

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 219/429 (51%), Gaps = 43/429 (10%)

Query: 30  ISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR      + F AIKG  ++G+DF L    KG    +++ ++  ++   +  V+  
Sbjct: 33  ISTDSREDFNENKLFLAIKGDKFNGNDFALDTYNKGCRFFILSENI--NMPKDANVVYTN 90

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D VL  + KLA   R R    +++ITGS GKTTTKE+  + L +  KT    G++NN IG
Sbjct: 91  DSVLFFI-KLAREYRRRFNIKVVSITGSCGKTTTKELTALFLGTKYKTLKTEGNFNNEIG 149

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP T+  +    +  + E GM+H  E+  ++  +     +I  + P H++    +E IA 
Sbjct: 150 VPKTIFNLDDSYEMAVIEAGMNHKNELLRISEAIEADTVIINNVEPVHIAFLGSLENIAL 209

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+E+F   ++   I  N + +  ++L +++    IK I        AD  +++ K+ ++
Sbjct: 210 AKSELFNNAKENAII--NKNTNKVDILLSEAKNKKIKNIIE------AD--IKEIKKIND 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG- 327
            S++      K++   H+ IG    QN+LM L    +   D++   KAL+ +  ++ R  
Sbjct: 260 NSFV-----YKNVTFNHNLIGDFNLQNILMALKAAELYNIDLEECAKALTNYQNQKNRMQ 314

Query: 328 --KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             K   C+       +I++ YN+NP ++K   ++L  +S   E R+IA++GDM E    +
Sbjct: 315 IIKINNCS-------IINDCYNSNPTALK---NMLIYLSKREEKRKIAIIGDMLETETQN 364

Query: 386 QSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            SFH ++   + SL NI+ V   G +   + + +  S  +H+ +  + +     ++++D 
Sbjct: 365 SSFHKEIGIFINSLKNINEVITVGDNSQKIDNEVTCS-KMHFKKVEESI-----NTIID- 417

Query: 445 DVVVVKSSN 453
              ++K+SN
Sbjct: 418 ---IIKNSN 423


>gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
 gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
          Length = 440

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 204/446 (45%), Gaps = 32/446 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+ KG    +V+    A      I +  V+
Sbjct: 16  VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEKEYADPTDKRIIL--VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+   K +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  D +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+     +FLN  ++    + A+        I ++G+   AD Q    K  S 
Sbjct: 194 KGELYDYLKAHDALLFLNESNADLTEMAAQRE---FDRIITYGQDDTADVQ---GKVISC 247

Query: 269 QSWMEVQLQGKSM----------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             +++ + Q  S+          EV  H IG +   NML  + I             AL 
Sbjct: 248 APFLKFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHFGVTPQQINHALE 307

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM
Sbjct: 308 SYIPHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFRLMEVE---HKMAILGDM 360

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G  S   H  + E+L    +++VWL G      ++ L  +      + +D +   I 
Sbjct: 361 RELGAASAEEHQKVVELLKAAGLTNVWLVG------EEFLKTNTDFRKFKNVDEVKAEIA 414

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
               +   +++K SN    + L +LL
Sbjct: 415 HHQPENHYILIKGSNGIRLFELPDLL 440


>gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M01-240013]
          Length = 479

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 51  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 107

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA   R      +  ITGSVGKTT KEML   L          A  G+
Sbjct: 108 --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 165

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 166 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 225

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 226 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 285

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 286 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFS 341

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 342 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 392

Query: 380 EMGE 383
           E+GE
Sbjct: 393 ELGE 396


>gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
 gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
          Length = 479

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 51  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 107

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA   R      +  ITGSVGKTT KEML   L          A  G+
Sbjct: 108 --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 165

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 166 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 225

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 226 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 285

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 286 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 341

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 342 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 392

Query: 380 EMGE 383
           E+GE
Sbjct: 393 ELGE 396


>gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240149]
          Length = 436

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 8   VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 64

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA   R      +  ITGSVGKTT KEML   L          A  G+
Sbjct: 65  --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 122

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 182

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 183 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 243 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 298

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 349

Query: 380 EMGE 383
           E+GE
Sbjct: 350 ELGE 353


>gi|187479354|ref|YP_787379.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella avium 197N]
 gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bordetella avium 197N]
          Length = 939

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 178/366 (48%), Gaps = 17/366 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S D+RS+A  E F AI G ++DGH ++  A             +   +   S+P  
Sbjct: 500 VAGVSTDTRSVAADEIFVAISGENFDGHRYLAQAQAA----GACAAVVAHRVSDSSLPQL 555

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSY 143
            + +   AL +LA A R R    +IA+TGS GKTTTKEM++  L++ +      A  G++
Sbjct: 556 VLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNF 615

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLTL R+       + ELGM+H GEI +L  + +  +A++      H     G+
Sbjct: 616 NNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGV 675

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A     +   L + G      DD +  +    +   G + +  FG     D   +K 
Sbjct: 676 EAVARENGAVLSALPEDGVAVYPGDDVYTPIWDELA---GARRVLRFGLQPGLDVYAQKI 732

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +  +  +V       ++V    G H  +N L  +       A + +A++AL  F   
Sbjct: 733 RPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAV 792

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +R   +       LID++YNANP S++ AI VL+Q+     G R+ VLGDM E+G+
Sbjct: 793 KGRMQRKETSNGT---ILIDDTYNANPDSVRVAIEVLAQLP----GPRVLVLGDMGEVGD 845

Query: 384 LSQSFH 389
              + H
Sbjct: 846 EGPAMH 851



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 25/241 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS---IGSLSIPVF 86
           + +DSR ++P + F A +G   DG  +I  A+  GA +V+ ++D +       S  +PV 
Sbjct: 30  LRLDSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDALTQSVVADSRVLPVA 89

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG----- 141
           G+  +LG L       +  +  T++A+TG+ GKT+  + L  AL+ + K    IG     
Sbjct: 90  GLRGMLGELAD-GWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGTLGGL 148

Query: 142 -----SYNNHIGVP--LTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIAVITT 191
                S   ++  P  +TL R+   + D G   + +  S +G  +     VR   A  T 
Sbjct: 149 LPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAGYTN 208

Query: 192 IAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           +   HL     +E+  +AKA +F   GL+      +N DD+    L AK   +G+ + Y+
Sbjct: 209 LTRDHLDYHGTMEQYEAAKALLFNWPGLQAA---VINADDAAGRRLLAK-LPVGLASAYA 264

Query: 250 F 250
            
Sbjct: 265 I 265


>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
          Length = 458

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 206/449 (45%), Gaps = 34/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ DSR  AP   F  I G   DGH FI + ++ GA   +   ++  +      P  
Sbjct: 28  VTAITSDSRQAAPGCLFVPIVGERVDGHSFIPNVMEAGALATLSQKELPEA----RFPYI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L A+  +A     + K  ++ ITGSVGKT+TKE++   L          G++NN 
Sbjct: 84  QVASSLQAVKDIAKFYLEQLKIPVVGITGSVGKTSTKEVIASVLKEKYHILKTQGNFNNE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLT+ R+    +  + E+G+S  GE+  L  + RP   VIT I   HL      + +
Sbjct: 144 LGLPLTVFRLRDYHEIAVLEMGISDFGEMSRLADIARPDTCVITNIGQCHLEFLGDRDGV 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----AD-FQLR 261
             AK E+F  L++ G   LN DD     ++      G + I+ FG +      AD  Q R
Sbjct: 204 LKAKTEVFRYLKEGGRAILNGDDDKLATIR---QVQGKEPIF-FGMNPAFPVYADQIQSR 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML--MTLGIVSILTADVDTAIKALSV 319
             K  S      + L      V     G HM  N L    +G+V  LT   +   + +  
Sbjct: 260 GLKGMS----CRIHLPEAEFAVEIPMPGQHMVYNALAAAAVGMVHGLTP--EQIRRGIES 313

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  GR +     +    F ++D+ YNANP SMKA++ VL        GR++A+LGDM 
Sbjct: 314 LEPISGRFR----MIETDHFLIVDDCYNANPVSMKASLDVLKD----ALGRKVAILGDMG 365

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFL 435
           E+GE  +  H ++ +      +  +  +G    +   A K A P ++ V Y      L  
Sbjct: 366 ELGEQEKELHAEVGDHAGRCGLDLLICTGSLSRYMSEAAKAANP-NLEVIYEVDSKKLER 424

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + S L DGD ++VK+S+   + RL+  L
Sbjct: 425 NLFSYLRDGDTILVKASHFMHYERLVQRL 453


>gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
 gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
          Length = 474

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 186/386 (48%), Gaps = 43/386 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----I 83
            G  IDSR +     F A  G + DG+DF   AVQ GAG VV+  +  A + SL+     
Sbjct: 27  RGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAGAVVMTREPEAELVSLAQDKGC 86

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +   DD    L +LA   RL     ++ ITGS+GKTTTK++L   L+   + +A  G++
Sbjct: 87  AILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTTKDVLAAVLAKRYRVWATKGNF 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+   P D +  + E+GM+H  EI  L+    P++A+++ I  +H+      
Sbjct: 147 NNLIGMPLTVLSAPADTEVLVLEMGMNHFHEIERLSQSANPNLAIVSKIGTSHIGILGSR 206

Query: 204 EEIASAKAEIFEGLEKTGT----IFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADF 258
           E IA AKAEI +G+   G     + L  +D F   ++   +   GI  + + G S + + 
Sbjct: 207 ENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDTFAQPAGIDVMLA-GVSDDDEV 265

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------- 308
           + R  +         V  +G+ +  +  G G  +   ML   G+ S+  A          
Sbjct: 266 RARDVR---------VDDEGRPVFTLDFGQGETI-DTMLAIPGVQSVPNAVKAAAVAYRL 315

Query: 309 -----DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +D A + L++       G R      +    +ID+SYNA+  SM A + +L  +
Sbjct: 316 GVTPEQIDAAFRGLTI------TGHRQEIKRAKSGARVIDDSYNASAESMAAGLDLLCSL 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFH 389
           S  G   R+A+LG+M EMG+ +   H
Sbjct: 370 SCTGS--RMAILGEMGEMGDEAPRMH 393


>gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 432

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 213/448 (47%), Gaps = 42/448 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR+      F A+KG +++G+ F   A++ G+   +V  D  A + +       V
Sbjct: 15  GVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIV--DEAAYVPAGDTHYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  L +LA   R R    II ITG+ GKTTTKE+++  LS         G+ NN IG
Sbjct: 73  DNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +   HL  F   E +  
Sbjct: 133 VPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVIR 192

Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNA 256
            K E+++ L + G  TIF++ D+ +   L     A G+  I S+G+          + N+
Sbjct: 193 TKGELYDYLRQKGDSTIFIHQDNPYLTKL-----AWGLNPI-SYGEQDGLYVNGHVTGNS 246

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            + + +WK   E S  EV  +          IG +   N L  + I      + +   +A
Sbjct: 247 PYLIFEWKSGKEGSLHEVHTR---------LIGEYNLSNALAAVTIGCFFGVEPEKIDQA 297

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ + P+  R +  + A N    TLI ++YNANP SM A+IS    +     G+++ +LG
Sbjct: 298 LNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILG 350

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ S   H  + + L   +   V L G    A +   P      Y +    L   
Sbjct: 351 DMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPT-----YPDA-PALIAE 404

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +Q +   G  +++K SN      +++ L
Sbjct: 405 LQKNKPCGKTILIKGSNGIKLNTVVDYL 432


>gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
 gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
          Length = 437

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 183/387 (47%), Gaps = 23/387 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+QKG    VV+    A        +  VD
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKADDGRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  LS     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ L+   G +FLN  ++    + A+        I ++G+ + AD Q      C+ 
Sbjct: 194 KGELYDFLKAHDGLLFLNESNADLMEMAAQRE---FSRIITYGQDETADVQ-GNVVSCAP 249

Query: 268 --EQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             + +W  +  Q  S   EV  H IG +   NML  + I             AL  + P 
Sbjct: 250 FLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIPH 309

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEM 381
             R +    A N+    LI ++YNANP+SM AAI    L Q+       ++A+LGDM E+
Sbjct: 310 NNRSQLTETAHNR----LIVDAYNANPSSMAAAIENFRLMQVKD-----KMAILGDMREL 360

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           G  S   H  + ++L    I +VWL G
Sbjct: 361 GAASGEEHQKVVDLLKNTGIDNVWLVG 387


>gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
          Length = 457

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 200/404 (49%), Gaps = 28/404 (6%)

Query: 8   HDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +++L  I+  S G   + F+N   ISIDSR++   + F AIKG ++DGH F+   + KG 
Sbjct: 9   NNVLGDIKNLSEG--KKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKGV 66

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV+   M   + S + P + V+D   A  KLA+  R +    I+AITGSVGKTTTKEM
Sbjct: 67  KSVVIKKGMQKLLPS-NFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEM 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+ + +      ++NN IGV LT+    ++    + E+GM  LG+I  L+    P 
Sbjct: 126 IGGVLNKLGRIKLSHANFNNEIGVGLTILAADIEDKVLVLEMGMRGLGQIENLSKYSEPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSH 240
           IAVIT I  AH+      E I  AK EI + L   G + +  +D F      E  K +  
Sbjct: 186 IAVITNIGTAHIGLLGSKENITHAKCEISKFLNPEGVVIIPANDPFLEKTLKEFWKGRVI 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            + +  I +  +S   D  LR +   S ++   + ++  + E+     G+H A N L   
Sbjct: 246 KVRLLNIANQKESIKKDDNLRGFYNPSNKT---ILIEENTFEISFE--GFHNASNFLFAY 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  D  ++ K    F   +GR K  +        T+ DESYNA+P S+KA I  L
Sbjct: 301 AVAKELGIDFASSNKF--DFVSLDGRNKILKSVKT----TIYDESYNASPESVKACIKNL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +  P     +  + G M E+G+ S+ +H    E+ +L N S +
Sbjct: 355 LE-KPRN---KFFIFGSMQELGKESEKYH---KEIFNLINNSDI 391


>gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
 gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
          Length = 461

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 218/472 (46%), Gaps = 50/472 (10%)

Query: 5   WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKG------------ 48
           ++  ++ + + G  I I      + FV+ +  DSR I     F  I              
Sbjct: 3   YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62

Query: 49  ---PHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVA 101
                 DGH FI  A++ GA         VAS    I   S+P+  V D   AL  LA  
Sbjct: 63  YTIAEKDGHKFINSALKNGA---------VASFADHIVQTSLPLILVSDTQLALWALAKN 113

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
              +     IA+TGS GKTTTK+++   LS   K +  + S NN IGVP T+  MP D +
Sbjct: 114 YLNKINPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTE 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+GM HLG++  L+ ++ P+I++IT I  AH+  F   ++IA AK EI +GL+K G
Sbjct: 174 IAVIEMGMDHLGQLTALSKMLEPNISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDG 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKS 280
           T   + D+    LLK ++     + + +FG+ ++ +F    W  Q  ++  +  ++  ++
Sbjct: 234 TFIYDGDEI---LLKERADLFSGEKV-TFGEKESNNF----WVSQIEDKKRLSFKVNQET 285

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V  + +G   A N    + +         T  +        + R +    +  +   T
Sbjct: 286 YSV--NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGE---T 340

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + YN+NP +   AI +L      G  ++I VLGDM E+G+   S H+ L   +    
Sbjct: 341 IISDVYNSNPTAAIKAIEILKDFPTRG--KKILVLGDMLELGDQEVSLHLALKAPIERAA 398

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+L G  + +L  A+      +    +  L   +QSSL   DVV++K+S
Sbjct: 399 FDEVYLVGPIMKSL--AVKMQARWYDKAFLTDLSRDLQSSLSKNDVVLLKAS 448


>gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
          Length = 453

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 170/335 (50%), Gaps = 11/335 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N + I+S+ +   + F A+KG + DG+ F   A ++GA L V +     +  S++  +  
Sbjct: 25  NNVVINSKEVKKGDIFLALKGTNVDGNSFFKEAYERGAILTVFDNPYFYNKASINKVL-- 82

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   A+    +     + A  +AITGSVGKTTTK++L    S   ++Y    +YNN +
Sbjct: 83  VEDSFNAIKSFGIWKLKNNFAKRVAITGSVGKTTTKKLLYEIFSKQYQSYMSYKNYNNEL 142

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ ++ A +P +VD+  FE+G +  GEI+  T  +RP +AVIT IA +H+  F  + EIA
Sbjct: 143 GIAISCANIPDEVDYAFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLNEIA 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           + K  I E  +    ++LN +D+ +     K   +  K I++ G S+ ADF++   K   
Sbjct: 203 AEKFSIAE-TDSVKELWLNENDTVY----LKDEIVKNKKIFTVGFSEKADFRIIDIKSLD 257

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V+      +   +   YH   N  M  G+      + D   +A+  F P+E RG
Sbjct: 258 GGYEFYVKFNRDKFKFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLPEEKRG 317

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             Y    N     +ID++YNA+  S+ AA+  L +
Sbjct: 318 VVY----NYENIAIIDDTYNASIDSITAALKSLDK 348


>gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC
           13032]
 gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC
           13032]
          Length = 514

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 208/478 (43%), Gaps = 46/478 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSRS+ P   F A+ G   DGHDF   A++KGA  V+   ++   + ++ +P   + 
Sbjct: 31  VEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREV--DVPAIVVPPVKIQ 88

Query: 90  D----------------VLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEML 126
           +                V+ AL++LA       VA     +  ++AITGS GKT+TK+ +
Sbjct: 89  ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGH---QLNVVAITGSAGKTSTKDFI 145

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L     T A  GS+NN +G+P T  R   D  + + E+    +G I+ LT +  P I
Sbjct: 146 ATVLDQDGPTVAPPGSFNNELGLPHTALRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRI 205

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTI-FLNYDDSFFELLKAKSHALG 243
           A +  +  AHL  F   E IA AK EI E L  +KTG +  LN DD F   +  ++ A  
Sbjct: 206 AAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARV 265

Query: 244 IKTIYSFGKSKNADFQLRKWK-----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      G++K +D+    W          ++   +  +  S  V     G H   N L 
Sbjct: 266 VWFTTDAGQAKKSDY----WATSISLDAVARASFTLNTKDGSWPVTLQVFGEHQVANALA 321

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I        +  +  L           R          T+I++SYNANP SM+A I+
Sbjct: 322 AAAIAMEAGVAPELVVAGLEAH--SAASAHRMDVKTRADGVTIINDSYNANPDSMRAGIA 379

Query: 359 VLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLAL 414
            L+   S   E    AVLG M E+G+ +   H +L   L+ YN+  +   G +       
Sbjct: 380 ALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELAKYNVQELVAVGENPNCAALA 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           + A    +  H    +D     +   +   DVV+VK+SN+   +R+   L    P ++
Sbjct: 440 ESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLVKASNADRLWRVAEALHGMVPGLK 497


>gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 450

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 207/439 (47%), Gaps = 34/439 (7%)

Query: 30  ISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---- 84
           IS DSR +    + F AIKG  +DG+ F L    KG    ++      S  S+ +P    
Sbjct: 35  ISTDSRDNFDENKLFLAIKGEKFDGNKFALETYNKGCRYFIL------SDASIKLPDDAV 88

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           VF  DD +    KLA   R R    +I+ITGS GKTTTKE+  + LS+  K     G+ N
Sbjct: 89  VFYADDTILFFIKLAREYRRRFNIPVISITGSCGKTTTKELTHLFLSTKYKALKTEGNLN 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP T+  +    +  + E GM+H  E+  ++  +  +  +I  + P H++    IE
Sbjct: 149 NEIGVPKTIFNLDDSYEIAVIEAGMNHENELLRISEAIEANTVIINNVEPVHIAYLGSIE 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+E+F    +     +N + +  ++L+ ++    IK I        AD      K
Sbjct: 209 NIAYAKSELFNHTRENANAVINKNTNCIDILEKEASRNNIKNIIE------ADI-----K 257

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +  ++     +  G + +  H+ IG     N+L  L    +   D+      L  +  ++
Sbjct: 258 EIIKKDDNTFEYNGITFK--HNLIGDFNLHNVLSALKAAELYDVDLQKCADILITYESQK 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +     +N     +I++ YN+NPA++K  I  LSQ S   E ++IAV+GDM E    
Sbjct: 316 NRMQ----IINIKGCNVINDCYNSNPAALKNMIKFLSQRS---ESKKIAVIGDMLETETE 368

Query: 385 SQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + S+H D+ ++++ L NI  V   G H   + D +  +   +Y E        ++  L  
Sbjct: 369 NSSYHKDIGKIINELKNIDTVIAVGKHSKDIYDTV--NCEKYYFENAQSSVEKVKEFLKY 426

Query: 444 GDVVVVKSSNSCGFYRLIN 462
              +++K+S   GF  +I+
Sbjct: 427 DTAMLIKASLGMGFAVIID 445


>gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 433

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 188/388 (48%), Gaps = 29/388 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+Q+G    VV+             +  VD
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDEAEFCPPNDERYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A   LA   R      I+ ITG+ GKTTTKE+L   L         +G++NN IGV
Sbjct: 74  DVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQKYNVLYTLGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  LV P +A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193

Query: 210 KAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADFQLRKWK 264
           K E+++ +   K G +F++ ++          H +GI     + ++G     D      K
Sbjct: 194 KGELYDFMRQSKRGKVFIDANN---------PHLMGIAEGLDLVTYGTPARPDL-FVSGK 243

Query: 265 QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             S   ++    Q   G   EV  H +G +   NML  L +   L    + A +AL+ + 
Sbjct: 244 VVSAAPFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAEDANRALANYV 303

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCE 380
           P   R +    A N+    LI ++YNANP SM  A++    +  PH    ++A+LGDM E
Sbjct: 304 PSNNRSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVPH----KMAILGDMLE 355

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G +SQS H  + + LS   +  VWL G
Sbjct: 356 LGAVSQSAHQAIVDQLSQLALDEVWLVG 383


>gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
 gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
          Length = 455

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 192/438 (43%), Gaps = 21/438 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R + P   F A+ G  +D HDFI  A + GA   +V            +P   V 
Sbjct: 30  ITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVERRQ-----DDPLPQLEVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  L  A RL     ++A+TG+ GKTT K+ML   LS    T A  G+ NN  G 
Sbjct: 85  DTRLALGLLGRARRLAWGGPLVAVTGNSGKTTVKQMLATILSRSGATLATRGNLNNDFGA 144

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL  +  +    + ELG +HLGEI +   L  P +AVIT +  AH+  F G+  IA A
Sbjct: 145 PMTLLELDGEHRRAVVELGANHLGEIAWTASLAMPDVAVITNVTGAHVGEFGGMGRIAQA 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268
           K EI  GL + G   LN DD +F    +++   G + +  FG       +      C E 
Sbjct: 205 KGEILGGLSRDGVAVLNRDDRYFRFWASQA---GSREVLDFGLEDEGRLRAETL-VCDEF 260

Query: 269 -QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +    +   G+ +  V   + G H   N L        L AD    +  L    P  GR
Sbjct: 261 GRYAFTLSFDGRELGRVQLALMGRHNVANALAAAAAALALRADPADVLAGLEEVEPVAGR 320

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              +     +    L+D++YNANP ++KAA+  L+ +       R  +LG M E+GE S 
Sbjct: 321 LGVF---AGRNGARLLDDTYNANPGAVKAALETLATLPAP----RWCLLGAMGELGEASA 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +H ++        I  +   G        A     + H+ +  + L   +   L  G  
Sbjct: 374 HWHAEVGHHARTLGIDFLGTLGEAARPASRAFGEGGY-HFDD-REALTRHVLHHLPPGAS 431

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK S S G   ++  L
Sbjct: 432 VLVKGSRSAGMEHVVTAL 449


>gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 420

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 183/386 (47%), Gaps = 16/386 (4%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L AL +L+   R +  A II ITGS GKTTTK+++   L +  + +   G+ NNHI
Sbjct: 42  VDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNHI 101

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTL ++  D +  + E+GMS  GEI  L+ L +P +A+IT I  AHL      EEIA
Sbjct: 102 GLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIA 161

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC 266
            AK EI  GL+  G    N D+   + +  +          SFG KS N  + +      
Sbjct: 162 RAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIGN 221

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S+   +LQ    E     +G H   N L  +     L    +   + L         
Sbjct: 222 DGSSF---RLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQGLRDVQLS--- 275

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +  FT+++++YNA+PA+ KA +S++ Q+   G   +  VL DM E+GEL +
Sbjct: 276 GMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLK--GYRHKYVVLADMLELGELEE 333

Query: 387 SFH-------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            FH        +LAE   L  I      G ++     A    ++ ++ E    +   ++ 
Sbjct: 334 QFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKE 393

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   DVV+VK+S       ++N LL
Sbjct: 394 VIHPEDVVLVKASRGMKLEDVVNFLL 419


>gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 471

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 217/468 (46%), Gaps = 37/468 (7%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           Q H I          + IDSR++ P   F A +G   DGHD+   AV             
Sbjct: 16  QSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAEQAVAA-------GAAA 68

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           V +   L +P   VDDV  AL +LA  V  RL +K  ++A+TGS GKT+TK+++   L  
Sbjct: 69  VLATRPLGVPAIVVDDVQSALGRLARFVVERLGTK--VVALTGSAGKTSTKDLIAQVLQR 126

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              T    GS NN IG+PLT  R   + +  + E+G   +G IR+LT L  P I ++  +
Sbjct: 127 KGPTVWTPGSLNNEIGLPLTALRATEETEHLVLEMGARGIGHIRYLTELTPPRIGLVLNV 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
             AH+  F G E+IA AK E+ E L    E  G   LN DD     + +++ A     + 
Sbjct: 187 GTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRAMASRTKA----RVL 242

Query: 249 SFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            FG++ +A  +    +     Q    +       +V     G H   N L      + + 
Sbjct: 243 LFGEADDAAVRAENVRLTELGQPTFTLHTPTGCSDVTMRLYGEHHVSNALAA----AAVA 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISP 365
            ++D +   +++   +     R+R  + +     T+++++YNANP SM+AA+  L+ +  
Sbjct: 299 HELDMSASEIALALSEADTLSRWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM-- 356

Query: 366 HGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDAL 418
            G+GRR  AVLG M E+G+ +   H  +  +    N+  +   G        + A  +  
Sbjct: 357 -GKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGS 415

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                VH S+    + L ++  L  GDVV+VK+S S G  R+   LLE
Sbjct: 416 WGEESVHVSDAQAAVDL-LRRELRPGDVVLVKASRSVGLERIAQALLE 462


>gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
 gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
          Length = 478

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 202/455 (44%), Gaps = 23/455 (5%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  ++ DSR++ P + F A+ G  +D HDF+   V +GA  V+V+    A++   +
Sbjct: 25  PDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRAPAATLDVTN 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139
           + V  V D    L +LA   R +    ++A+TGS GKTT KEM++   +         A 
Sbjct: 85  VAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDARLAT 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I      H   
Sbjct: 145 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMINNAQREHQEF 204

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255
              +E +A   A +   L   G      D +    +  + KA   A G + +  FG    
Sbjct: 205 MVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYAPVWKA---AAGSRRVLDFGMDAG 261

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A          ++   +EVQ  G+   +    +G H A+N L             +   +
Sbjct: 262 A--VTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATACALAAGVAPEVIAQ 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  F P +GR +R +   + G   +ID++YNANP SM+AAI  L  +       R  VL
Sbjct: 320 ALGNFAPVKGRLQR-KQGTHGGL--VIDDTYNANPDSMRAAIDALVTLP----APRWLVL 372

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLF 434
           GDM E+G    +FH ++        I  V  +G       DA  P + H   +E    L 
Sbjct: 373 GDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDAFGPGAQHFASAED---LI 429

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                ++     V+VK S      R++  L+ + P
Sbjct: 430 EHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDP 464


>gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans
           C54]
          Length = 954

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 183/370 (49%), Gaps = 23/370 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+S D+R I   E F A+ G ++D H+++  A ++GA   VV   +  S    S+P 
Sbjct: 514 LVKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERGACAAVVAHAVPES----SLPQ 569

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGS 142
             + D   AL ++  A R R K  ++A+TGS GKTTTKEM++  L+  +      A  G+
Sbjct: 570 LVLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGN 629

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN IGVPLT+ R+  +    +FELGM+H GEI  L  +  P +A++T     H      
Sbjct: 630 LNNDIGVPLTVLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVALVTNAQREHQEFMHT 689

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +E +A         L   G      D+ +   ++ L A   AL       FG     D  
Sbjct: 690 VEAVALENGAAIAALPADGVAVYPGDEPYAAIWDRLAAPRRAL------RFGLQPGLDVY 743

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +     + +   V     S ++     G H  +N L  +       A +D A++AL+ 
Sbjct: 744 AEQILADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAG 803

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F P  GR  +Y+  L+ G   LID++YNANP S++AAI VL++I+    G R+ VLGDM 
Sbjct: 804 FSPVAGR-MQYK-KLSDGTL-LIDDTYNANPDSVRAAIDVLARIA----GTRVLVLGDMG 856

Query: 380 EMGELSQSFH 389
           E+G+   + H
Sbjct: 857 EVGDNGPAMH 866



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 158/385 (41%), Gaps = 49/385 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------- 82
           + +DSR I P + F A  G   DG  +I  A+  GA  V+      A+I + +       
Sbjct: 31  LKLDSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTPM 90

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG- 141
           +PV G+  +LG L       R  S   ++A+TG+ GKT++ + +  AL    K    IG 
Sbjct: 91  LPVTGLRALLGELGDTWY-GRPSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGT 149

Query: 142 ---------SYNNHIGVP--LTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                    +   H+  P  LT+ R+   + D G   + M  S +G  +     VR  +A
Sbjct: 150 LGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             T +   HL     +E   +AKA +F   GL       +N DD     L A   A    
Sbjct: 210 AYTNLTRDHLDYHGTMERYEAAKASLFRWPGLSAA---VVNADDEAGRRLIASLPA---- 262

Query: 246 TIYSFGKSKNAD------FQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +   G S +AD       + R  +  ++ Q +  V   G++ ++V   +G H   N+L+
Sbjct: 263 DLSVMGYSLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEA-QIVTRLLGAHNVSNLLL 321

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR-------GKRYRCALNQGFFTLIDESYNANPA 351
             G++  L        + L+   P +GR           +    +G   ++D  Y+  P 
Sbjct: 322 VAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVD--YSHTPD 379

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           S+  A+  L  ++    GR + V G
Sbjct: 380 SLARALMALRPVAQARAGRLVCVFG 404


>gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
 gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
          Length = 452

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 16/369 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R +     F A+KG  +D HDF   A   GAG ++V+  +     +  +P  
Sbjct: 24  IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +    ++A+TGS GKT+ KEM    LS    T    G+ NN 
Sbjct: 79  IVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  +  + + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265
           A AK EI+ GL + G   LN D++ +   +A    +G + ++ F   + N+DF     + 
Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   +     +++V+    G H   N L    +   + AD+      L+      G
Sbjct: 256 TSHGTEFTLHTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    R   +Q    L+D+SYNAN  SM AA+ VLS++     G R  V+GDM E+G  S
Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRAMVVGDMAELGAES 368

Query: 386 QSFHIDLAE 394
            + H ++ E
Sbjct: 369 AACHREVGE 377


>gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola]
          Length = 453

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 203/417 (48%), Gaps = 52/417 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ I I+++ I P   F A+ G ++D H FI  A++KG   ++ +  + + I  +    
Sbjct: 23  LIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAIITHKHIKSHISYII--- 79

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V +   AL ++A   R ++ A I+AITGS GKTT KEM    L     T + IG+ NN
Sbjct: 80  --VQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEMTASILRKYGNTISTIGNLNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVP+TL ++     + + ELG +  GEI +++++ +P I +I  I  +HL  F  +  
Sbjct: 138 NIGVPITLLQLNKYHKYAVIELGANQPGEISYISNMTQPEIILINNIQYSHLQGFKSLLG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWK 264
           ++ AK+EIF GL+  G + +N D   F   K K +      IY S  K +N++F      
Sbjct: 198 VSQAKSEIFSGLKPNGKVIINLDSHHFS--KWKKNIKNNHVIYFSIKKKQNSNFFSSNIT 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML----------MTLGIVSILTADVDTAI 314
             S  +   +     ++ +    +GY    N L          + L I+ I  AD     
Sbjct: 256 IDSYGTTFVMHTPNGTINISLPFLGYQNISNALAASALAFALKIPLNIIQIGLADTPIIS 315

Query: 315 KALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           + L   + +P +                LID++YN+N ASM  AI VL ++     G +I
Sbjct: 316 RRLQSIILNPDK---------------ILIDDTYNSNVASMITAIKVLEKM----PGYKI 356

Query: 373 AVLGDMCEMGELSQSFH---------IDLAEVLSLYNISH----VWLSGFHVLALKD 416
            V+GDM E+GE S  +H          D+ ++ S+ NIS+    ++ +G H L  KD
Sbjct: 357 LVIGDMSELGENSFLYHRMIGNAANLSDINKIFSIGNISNEITDIFHNGKHFLHKKD 413


>gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110]
          Length = 459

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 215/466 (46%), Gaps = 43/466 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH----------- 50
            P+WT  ++ +A+   + G  P   ++ ++ DSR + P   F A+ G             
Sbjct: 3   GPIWTVAEVARALG--AAGSFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGGFISAFASA 60

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKAT 109
            DG +F   A   GA  ++V  +    I  + +P   V D L   L  LA AAR R    
Sbjct: 61  RDGWEFADKAEAAGAAAMIVPHE----IAGIRVPQIVVKDTLIDGLWGLARAARARFNGP 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I +TGS GKT+TKE L    ++    YA   S+NN  GVPLTL     D    + E+GM
Sbjct: 117 VIGLTGSAGKTSTKEFL----AAYPNAYASPSSFNNFWGVPLTLCNARPDASLWVVEMGM 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +  GEI  L+ L RP +A++  + P HL     +E I   K  I  GL + G + L    
Sbjct: 173 NQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVSIALGLPEDGVLVLPAG- 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                LKA         +  FG  ++A+          E SW  V + GK         G
Sbjct: 232 -----LKASEWK---GKVVRFG--EHAEVHEVTHAPHGE-SWQVVAMIGKKQIAFSLTPG 280

Query: 290 Y-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             H  QN L  L   SI  A++D A  A+ +       G+    A+  G  T+ID+S+N 
Sbjct: 281 APHRVQNALAAL--ASIRAANLDAATLAIKLDRVGIMTGRGVEQAV--GGVTVIDDSFNG 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NPAS+ AA+  L   +  G GRRIAVLGDM E+G+ + S+H  L +   L  I  V+  G
Sbjct: 337 NPASVAAALHSLQARNVTG-GRRIAVLGDMLELGDDAPSYHTGLTK--HLDGIDGVYCVG 393

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSN 453
             +  L + LP    + + +    L     +SL+  GDVVVVK S 
Sbjct: 394 PLMRHLFEVLPSGKALGWHDDPATLKPGEVASLLKAGDVVVVKGSK 439


>gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
          Length = 607

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 32/401 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+  NTD+          V
Sbjct: 199 IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDIKDK------RV 248

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YNN
Sbjct: 249 IKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNN 308

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + 
Sbjct: 309 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDN 368

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E ++K  T F+  DD +   L            +   K K+ DF  +  K 
Sbjct: 369 VFKAKTELLEFVDKENT-FVCGDDEYLGKLDVNKIGFNGNNTH---KIKSYDFSNKGSKF 424

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +    E+ L GK   + +  I   +A+ + +T         ++   +K + + +    
Sbjct: 425 ILDGKEYEMSLLGKH-NISNTAIAIELAKKIGLT-------DEEIQKGLKEIKISNM--- 473

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R++  +  G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE  
Sbjct: 474 ---RFQ-EIKIGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENE 527

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             +H+D+   L    I  ++L G  +    D   ++    Y
Sbjct: 528 VDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568


>gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG]
 gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF]
 gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
 gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
          Length = 473

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 213/465 (45%), Gaps = 57/465 (12%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V G +  DSR++     F A  G   DGHD+   AV             V +   L
Sbjct: 23  PELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVAA-------GAVAVLATRPL 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P   VDDV  AL  LA     R    +IA+TGS GKT+TK+++   LS    T    G
Sbjct: 76  GVPAIVVDDVTAALGALARTVVERLGTAVIAMTGSAGKTSTKDLIAQLLSRRGPTVWPPG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PLT  R+  +    + E+G   +G IR+LT L  P I ++  +  AH+  F 
Sbjct: 136 NLNNEIGLPLTALRVTEETRHLVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFG 195

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---- 257
           G E+IA AK E+ E L ++G   LN DD     +  ++ A     +  FG++ +A+    
Sbjct: 196 GKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPRTRA----RVLLFGEADDAEVRAE 251

Query: 258 -----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                      F LR    C E   + ++L G+     HH      A  +   LG+ +  
Sbjct: 252 NVTLTDTGRPRFLLRTPTGCGE---VTLRLYGE-----HHVSNALAAAAVAHELGMPAEE 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQIS 364
            A   +  ++LS          R+R  + +     T+++++YNA+P S++AA+  L  + 
Sbjct: 304 IALGLSEARSLS----------RWRMEVTERPDGVTIVNDAYNASPDSVRAALRALVAMG 353

Query: 365 PHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALK 415
                  GR  AVLG M E+G+ S + H  +  +    N+S +   G        + A  
Sbjct: 354 SAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWLRMGAYN 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +       VH S+T   + L ++  L  GDVV+VK+S + G  ++
Sbjct: 414 EGSWGEESVHVSDTQAAIDL-LRGELRPGDVVLVKASRAAGLEKV 457


>gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 613

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 32/383 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+  NTD+          +
Sbjct: 203 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDVKDE------RI 252

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  +  LA+  R +    ++ ITGS GKTTTK+++   LS   KT    G+YNN
Sbjct: 253 IKVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNN 312

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + 
Sbjct: 313 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDN 372

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E + K  T F+  DD +  L K   + +G     ++ K ++  F  +  K 
Sbjct: 373 VFKAKTELLEFVNKENT-FVCGDDKY--LAKLDVNKIGFNNSNTY-KIESYKFSDKGSKF 428

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +    E+ L GK   + +  I   +A+ + +T         +++  +K + + +    
Sbjct: 429 VLDGKEYEMSLLGKH-NISNTAIAIELAKKIGLT-------DEEIENGLKEIKISNM--- 477

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R++  +  G    I+++YNA+P SMKAAI  L++I  + +  ++A+LGDM E+G+  
Sbjct: 478 ---RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKVAILGDMLELGDNE 531

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
             +HID+   L    I  ++L G
Sbjct: 532 IDYHIDVLNYLLDKKIKLIYLYG 554


>gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
 gi|27887168|gb|EAA24272.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
          Length = 611

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 199/404 (49%), Gaps = 38/404 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  + +DSR +     FFAI     +G+ ++   + KG  LV+  NTD+          V
Sbjct: 203 IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGTSLVIADNTDIKDK------RV 252

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YNN
Sbjct: 253 IKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNN 312

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + 
Sbjct: 313 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDN 372

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E ++K  T F+  DD +          LG   +   G ++N  +++  ++ 
Sbjct: 373 VFKAKTELLEFVDKENT-FVCGDDEY----------LGKLDVNKVGFNENNTYKIESYEF 421

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHP 322
            ++ S  +  L GK  E+    +G H   N  + + +   + +   ++   +K + + + 
Sbjct: 422 SNKGS--KFILDGKEYEM--SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNM 477

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R++  +  G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+G
Sbjct: 478 ------RFQ-EIKIGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELG 528

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
           E    +H+D+   L    I  ++L G  +    D   ++    Y
Sbjct: 529 ENEVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 572


>gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
 gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
          Length = 450

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 182/361 (50%), Gaps = 20/361 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I+ DSR+    + FFA+ G ++D HDF+   + KGA  VV   D  +  G L     
Sbjct: 24  INQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSRGDCASFSGCLK---- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143
            VDD L AL  LA A R +    +  ITGS GKTT KEML   L +        A  G++
Sbjct: 80  -VDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLASILRTAHGADAVLATAGNF 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202
           NNHIG+PLTL  +       + E+GM+H GE+  LT +  P++A++     AH+   F+G
Sbjct: 139 NNHIGLPLTLLNLREPHRHAVIEMGMNHAGELATLTRIAAPNVALVNNAMRAHIGCGFNG 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +++IA AKAEI++GL + G   L  +D    + +A   A   KT+ +FG +   D     
Sbjct: 199 VDDIARAKAEIYQGLPENGIAILPAEDDHLAIFQATVSAF--KTL-TFGATV-GDVHAEN 254

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               +  S  ++   G    V     G H   N      +            + L+ F  
Sbjct: 255 IALEALSSTFDLVYNGNRQAVQLPVAGKHNISNACAAAALAIAGGLRQPEIARGLAAFSN 314

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR +R +  + Q    ++D++YNANP SMKAA+ VL+++       R+ V+GDM E+G
Sbjct: 315 IKGRLQR-KNGIRQTL--ILDDTYNANPDSMKAALDVLAKLP----APRVFVMGDMGELG 367

Query: 383 E 383
           E
Sbjct: 368 E 368


>gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M04-240196]
          Length = 452

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A+I     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALINNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 478

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 178/362 (49%), Gaps = 17/362 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P + F AIKG   DGH FI H   +      + T  V  +    + +  V DV+
Sbjct: 38  DSRQVKPGDLFIAIKGAKVDGHAFI-HKAAQAGASAALCTHPVEDVPEGFLQIV-VPDVV 95

Query: 93  GALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
            AL+  A A  R + + T I ITGS GKT+TKE +   L     T   + SYN  IG PL
Sbjct: 96  AALHATARARTRRQPETTYIGITGSNGKTSTKEAIAAVLERHAPTLKTLASYNTEIGYPL 155

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL R+     + + E+G   +GE++ L+ +  P  +VIT +  +HL  F   E++  AK+
Sbjct: 156 TLLRLEPQHRYAVLEMGAQWVGELKMLSGITCPDWSVITNVGASHLGYFGSQEQVVIAKS 215

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQ 269
           E+ + L   G   LNYDD     +  K+ A   + IY +G+ + AD +  K    Q   +
Sbjct: 216 ELVQVLSPDGIALLNYDDPNVRAMNTKTSA---RVIY-YGQGEGADVRASKPGGDQLFGR 271

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S++ +  Q + + V  H  G H     L    +       +D   +AL    P + RG+ 
Sbjct: 272 SFV-LSYQDQEVPVQLHIPGEHGIAIALAAAAVGCAAGLPLDVIRQALEDLKPAKRRGE- 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMCEMGELSQS 387
                     TLID+SYNAN  S+ A    +  S ++PH  G+R AVLGD+ E+G+ ++ 
Sbjct: 330 --IKPGPNGSTLIDDSYNANRQSILAIAQAMHGSTLAPH--GKRWAVLGDILELGQYARE 385

Query: 388 FH 389
            H
Sbjct: 386 EH 387


>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 470

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 222/468 (47%), Gaps = 44/468 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           IQG      P   V  ++ D+R +A  E F A++G  +DGHDF   AV +GA  ++V+ +
Sbjct: 18  IQGE-----PSARVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGACGLLVSRE 72

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +    G   + V  V D L AL  LA+  R R    +IA+TGS GKTTTK++LT  L++ 
Sbjct: 73  VSVPSG---VAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDLLTAVLAAR 129

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVD----FGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +  A   + NN IG+PLTL    +DVD      + ELGM   GEI  L  +  P   VI
Sbjct: 130 FRVLATRENLNNEIGLPLTL----LDVDPVHEVAVVELGMRAPGEIDLLARICEPTGGVI 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL     +  IA AK E+ + +  +G   L+ +    +    +        +  
Sbjct: 186 TNIGETHLELLGSVANIARAKGELLDHIPPSGFAVLHAESPGMDEQARRCRG----RVVR 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+S++ADF+L  ++   + S   V+  G   E      G H A N L  + +   L   
Sbjct: 242 FGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVGLELGLA 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           V      L     ++ R    R A+   G  T+I+++YNA+PAS+KAA+ VL++I+    
Sbjct: 302 VSEIRAGL-----EQARASSLRQAIVKAGGLTIINDTYNASPASVKAALEVLAEIAA--- 353

Query: 369 GRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-----ALPRS- 421
           GR  +A+LG M E+G  S   H ++    +   +  +   G   + + D      LP S 
Sbjct: 354 GRSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTMGELAVGIADGAREAGLPASR 413

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               H    ET+D        ++    V++VK S +    R++  L E
Sbjct: 414 IWACHT-LEETVDTARRLAGENV----VILVKGSRAFQMERIVKGLAE 456


>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
 gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
          Length = 488

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 206/442 (46%), Gaps = 23/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85
           +  DSR +     F  + G  +DGH F+  A + GA        +VA+  + S+P     
Sbjct: 58  VCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGA-----QAALVAAGSNASLPEGLLH 112

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V D   A  +LA   R +  A ++A+TGS GKTTT+E++  AL+S+    A   + NN
Sbjct: 113 WRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAGKTTTRELIRAALASLGPIQASASNNNN 172

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL          + E+GM   GEI  L+   +P IAVIT I  AH+      E 
Sbjct: 173 DIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERLSRCAQPDIAVITNIGTAHIGRLGSREA 232

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA+AK EI   L+  G + +   D   E   A+     I  +   G     + QL     
Sbjct: 233 IAAAKCEITAALKLDGVVVIPAGDPLLETALARVWQGRIHRVALVGDPGLTNSQLPAAND 292

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++       L     +      G H A+N L+   + S L  D D+ + AL V  P  G
Sbjct: 293 LADVDEQSGVLTLGEFDYRMPLAGRHNARNWLLARAVASGLNVDSDSLV-ALDVDVPG-G 350

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R    L  G  T++DE+YNA+P ++ AA+ +L+Q  P   GRR AVLG M E+G+ S
Sbjct: 351 RNRR----LKLGALTVLDETYNASPEAVLAALDLLAQ-QP---GRRFAVLGTMLELGDES 402

Query: 386 QSFH---IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            + H   ++ A  L L  +  V  SG    A+ +A           + +     ++  L 
Sbjct: 403 AALHRAVVERAVALKLDGLVVV-TSGAEATAMAEAGASLERFAVVASPEAAAEPLRGWLS 461

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            GD +++K+S      RL+  L
Sbjct: 462 AGDCLLLKASRGVALERLLPAL 483


>gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
 gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
          Length = 427

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           I+ DSR+      FFA+KG  +DG+ +   A+  G    V+ N D    IG  +I V   
Sbjct: 16  ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G++NNHIG
Sbjct: 71  DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F   E +  
Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ + ++ G IF+  ++ + +     S A GI+ I ++G   +A F   +   C 
Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  + QGK   V  H IG +   N+L  + +        +   +A++ + P   R 
Sbjct: 244 PFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385
           +  +   N+    LI ++YNANP+SMK A+   +   + P     +  +LGDM E+G  S
Sbjct: 304 QFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              H ++ E +       V+L G H   + K+  P +       T + +   ++   + G
Sbjct: 355 DELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMVEELRKQPLKG 407

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K S+S G  +L ++L
Sbjct: 408 YHILIKGSHSMGLEKLADIL 427


>gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 503

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 192/375 (51%), Gaps = 26/375 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V+  + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVDRLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             V++   AL ++A A   R +AT ++A+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VVVENTELALARVA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P + DF I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257
              +  +A  K  I+  L   G   +N DD+F    + +  +  +  + I  +G   +AD
Sbjct: 198 LGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLQISAD 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ + Q     +  V  QG++ +V     G H   N L   G+   L A +   + A
Sbjct: 258 ITARQLQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIA 314

Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L+  HP  GR  +    L  G   LID+SYNANP S+ AAI  L+     G+G    V
Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GDG--WLV 367

Query: 375 LGDMCEMGELSQSFH 389
           LGDM E+G    + H
Sbjct: 368 LGDMRELGAEGVALH 382


>gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
 gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
          Length = 510

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 205/455 (45%), Gaps = 34/455 (7%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+ P   V  + IDSR +AP   F A+ G   DGHDF   AV             V +  
Sbjct: 22  GVDPAAPVTSVVIDSRQVAPGSLFVALPGERVDGHDFAAAAVGA-------GALAVLAAR 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK----- 134
            + +P   V D    L  LA   R R  AT+I +TGS GKTTTK++L   L         
Sbjct: 75  PVGVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLLGGHGEAGGP 134

Query: 135 ----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T A IGS+NN IG+PLT+ R   +  F + E+G   +G I  L  L RP + ++ 
Sbjct: 135 GGLGATVAAIGSFNNEIGLPLTMLRAEPETRFVVLEMGARGIGHIATLCALARPQVGLVL 194

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +  AH+  ++ G   IA AK E+ E   +   + LN DD     + A+  A     +  
Sbjct: 195 NVGSAHVGEYADGRRGIAVAKGELAEAASE--LVVLNADDPLVASMAARVQA--SAKVVL 250

Query: 250 FGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           FG   +AD +  + +   + ++  ++   G+   +    +G H   N L        L  
Sbjct: 251 FGTGASADVRAERIEVDAAGRAAFDLLASGECHRLRLGLVGAHQVANALAAAAAAIGLGL 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPH 366
               A  AL    P+     R+R  +    G   +++++YNANP SM+AA++ L  I   
Sbjct: 311 APADAAAALERARPR----SRWRMEVTTTPGGVVVLNDAYNANPESMRAALAALLDI--R 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
           G+GR  AVLG M E+G  +   H +L  +++   +  +   G   L + +A    +    
Sbjct: 365 GDGRAWAVLGPMGELGAGAAEAHRELGRLVASLGVPRLVAVGPGALGVHEAAREDVAWAG 424

Query: 427 SET----MDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             T    +D    F+   +  GDVV+VK+S S G 
Sbjct: 425 ESTWVSGVDEAVAFLGGQVRPGDVVLVKASRSFGL 459


>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
 gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
          Length = 457

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 209/467 (44%), Gaps = 47/467 (10%)

Query: 20  GIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVAS 77
           G+V Q    +G+S D+RSI   + F A+ GP++DGHD++  A  KGA   VV  +D V+ 
Sbjct: 16  GLVTQDVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSRSDSVSR 75

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             +     + VDD   AL  +A A R R +  + A+TGS GKTT KEML   LS   +  
Sbjct: 76  KAA-----WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVKEMLHAILSQNAEVL 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+ NN IGVPLTL  +    +  + E G S  GEI + T +  P +A++     AHL
Sbjct: 131 ATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTDISCPDVAILNNAMGAHL 190

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             F  ++ +  +KAEIF  L +TG    +N DD   +     SH  G+  + +F  S   
Sbjct: 191 EGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWW--LSHTEGLPRL-TF--SARG 245

Query: 257 DFQLRKWKQ--------C------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           D +   W          C           ++VQLQ          +G H   N L     
Sbjct: 246 DLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQ---------VMGQHNVANALAAASA 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           VS     +      L  F    GR +  + A       +ID+SYNANP S+ AA+ +L  
Sbjct: 297 VSAQGMSLKDIASGLGSFSAVSGRMRPLKSARGA---LVIDDSYNANPGSVNAAMDLLVS 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVLALKDALP 419
           +     G  + VLGDM E+G  +   H  +    +       W  G    H +A  DA  
Sbjct: 354 LP----GESVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAYDAAA 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                H+ ++ + L   +      G  +++K S S    R++  L E
Sbjct: 410 GKQGQHF-KSHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTE 455


>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
          Length = 456

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 183/381 (48%), Gaps = 22/381 (5%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            + G+ P   V  I  DSR +   E F  + G  +DGH F+  A   G    VV      
Sbjct: 17  QAAGVDPAAPVGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGRAG 76

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +    +  + VDD L A  +LA+  R +  A ++A+TGS GKTTT+E++  AL  +   
Sbjct: 77  DV-PPGLLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLGPV 135

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A  G+ NN IGVPLTL +   +    + E+GM  LGEI  L+   +P +AVIT I  AH
Sbjct: 136 MASSGNENNDIGVPLTLLKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAVITNIGTAH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +      E IA+AK EI   L+  G + +   D   E          I+ ++S    + A
Sbjct: 196 IGRLGSREAIATAKCEITSQLKPDGLLVIPAGDPLLE--------QAIQAVWSGRVQRVA 247

Query: 257 ---DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D  + +     E       L  +   +     G H A+N+L+ + +   L   +  A
Sbjct: 248 LAGDPGVDQADLLGELDETNDLLSVRGERIRLPLAGRHNARNLLLAVAVAQELGVGL-PA 306

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +  L V  P  GR +R    L  G   ++DE+YNA+P ++ AA+ +L++      GRR A
Sbjct: 307 LADLDVEVPG-GRNRR----LQLGGLRVLDETYNASPEAVLAALELLARQP----GRRFA 357

Query: 374 VLGDMCEMGELSQSFHIDLAE 394
           VLG M E+GE S + H  +AE
Sbjct: 358 VLGSMLELGEQSVALHRQVAE 378


>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 446

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 28/438 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+IDSR +     FFA KG   DGH +I  A+ KGA   V+  +          P+  V 
Sbjct: 26  ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDENYYDANK---PLVLVK 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A+ +L      +     I ITGSVGKT+TK +L++ LS   K Y    ++NN +GV
Sbjct: 83  DTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNNELGV 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +  + + +   + IFE+G ++ GEI+ L+  ++P + +IT +  +H+  F  ++EI   
Sbjct: 143 AIVTSNIDLGAQYAIFEIGTNNPGEIKSLSEFLQPDVGIITGVGHSHIGRFGSLKEITKE 202

Query: 210 KAEIFEGLEKTGTIFLN--YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K  I EG++K G +++N   D S++         + +K    FG SK++D  + +     
Sbjct: 203 KLAISEGVKKDGVLWINDGVDTSYYNF----PEGINVK---KFGFSKDSDIYIEELNVEK 255

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E +++      +    ++H    H A N L  + +        +   + L  F P EGRG
Sbjct: 256 EVNFIVNFNNFRYCFRINHPFS-HFAVNALPAIALAFENQFHYEEIYRGLDKFVPVEGRG 314

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  R   N+    +I+++YNA   ++ +A+  LS+I      ++IA+LG+M E+    + 
Sbjct: 315 EIIRTQ-NK---IIINDTYNAGFEAVLSAVENLSKIDAP---KKIAILGEMAEIDGFEEK 367

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-V 446
            +  L   +   N  + +L G    + KD      +V Y +    L   I + ++ GD V
Sbjct: 368 LYSRLKNEVEKRNDIYFYLVG---ESFKD-FQSLENVSYFKDKSEL---INADILKGDGV 420

Query: 447 VVVKSSNSCGFYRLINLL 464
            +VK+S S  F  L+  L
Sbjct: 421 YLVKASRSKRFEELVEYL 438


>gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M0579]
          Length = 463

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 177/364 (48%), Gaps = 23/364 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++       
Sbjct: 34  LVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAALKD----A 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L      +   A  G+
Sbjct: 90  LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRHRFGNEAVLATTGN 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 150 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 209

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 210 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVL 269

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 270 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 325

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 326 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 376

Query: 380 EMGE 383
           E+GE
Sbjct: 377 ELGE 380


>gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
 gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
          Length = 420

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 188/391 (48%), Gaps = 16/391 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  +DG+ F   A++KG  L VV+   V       +    VD
Sbjct: 2   VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDERYLL----VD 57

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R      +I ITG+ GKTTTKE++   LS+        G+ NNHIGV
Sbjct: 58  DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 117

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +    I E+G +  G+I  LT + RP+  +IT I  AHL  F  +E +   
Sbjct: 118 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNIGRAHLQGFGSLEGVRRT 177

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ +   G I FLN+DD           + G++++ S+G S +A  + R     + 
Sbjct: 178 KGELYDFIRAEGGILFLNFDDDTL-----IDMSQGLQSV-SYGTSADATVRGRIVANNTP 231

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +++        V  + +G +   N L  +          +  + AL+ + P   R +
Sbjct: 232 YLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKPSNNRSQ 291

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                      +LI ++YNANP SM+ A+     +  H +   + +LGDM E+G  S+  
Sbjct: 292 WIETERGN---SLIVDAYNANPVSMRVALDNFDSL--HTDKPLVLILGDMNELGAESKRE 346

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           H+ L E ++      + L G    AL D+ P
Sbjct: 347 HMALLERINTGRYRQILLCGPCFTALADSFP 377


>gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus influenzae 10810]
          Length = 457

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 206/434 (47%), Gaps = 35/434 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ D+R       FFA+KG  +D H ++     +      V   +     S+SIP  
Sbjct: 25  VEEINTDTRKSVSNSLFFALKGEKFDAHQYL----DQAVAQGAVAVVVQQENSSISIPQL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142
            V D   AL +LA   R +     +A+TGS GKTT KEM    L         +    G+
Sbjct: 81  VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPAHL  F  
Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260
           +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK    D+ +
Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252

Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315
           +   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    ADV   ++
Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +   I  +
Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E +D L  
Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420

Query: 436 FIQSSLVDGDVVVV 449
            I++ L     VVV
Sbjct: 421 LIENQLQQNKKVVV 434


>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
 gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
          Length = 466

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 180/411 (43%), Gaps = 17/411 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+ T       I G SI        + +  DSR++ P + F A+KG  +D HDF+   V
Sbjct: 4   QPMTTLQQAAGWIAGASISGDATCSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+  +      + +P   V D    L +LA   R       +A+TGS GKTT
Sbjct: 64  ARGAAAVMVSRKV-----DVDVPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTT 118

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++        A  G+ NN IG+PLT+ R+       + ELGM+H GE  +L
Sbjct: 119 VKEMIAAIFAAAVGEGDRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGETIYL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKA 237
             + +P +AV+T     H      +E +A   A     L   G      D +S       
Sbjct: 179 AGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHASAIAALPADGVAVFPVDAESGGAYAAI 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A G + + SFG   +AD +     +   Q  ++V    +   +  H +G H  +N L
Sbjct: 239 WRQAAGTRKVLSFGTDASADVRATVSLENGVQV-LDVTAPDRRFTLRLHVLGVHNVRNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                      DV      ++ F   +G   R +         +ID++YNANP SM+AAI
Sbjct: 298 AATACALAAGVDVAAIQAGIAGFTAVKG---RLQVKHTPAGTVVIDDTYNANPDSMRAAI 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            VL+  +      R+ VLGDM E+G+    FH ++        I  +W +G
Sbjct: 355 DVLAGFATP----RLLVLGDMGEVGDQGPMFHTEIGAYARERGIDALWATG 401


>gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 500

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 214/482 (44%), Gaps = 59/482 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----------VASIG 79
           +  DSR +AP   F A+ G   DGHD++  A ++GA L +V   +            + G
Sbjct: 31  VEFDSRKVAPGSIFMALPGATVDGHDYVAAAGEQGAALAIVGRPVGYPALLAPASERAEG 90

Query: 80  SLSIPVFGVDD------VLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +  VFG D+      VL A++KLA     V A       ++ +TGS GKT+TK+++  
Sbjct: 91  TDNSAVFGADEEGYGAAVLAAVDKLARHNTDVLAD-EEGMVVVGVTGSAGKTSTKDLIGA 149

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L  + +T A  GS+NN IG+P T  R      F + E+    +G I  LT +  P I V
Sbjct: 150 LLGDLGETVAPPGSFNNEIGLPYTALRASRGTKFLVSEMSARGVGHIAHLTTVTPPKIGV 209

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIK 245
              +  AHL  F   E IA AK E+ E L   E  G   LN DD     ++ ++ A  + 
Sbjct: 210 ELNVGSAHLGEFGSREAIAQAKGELVEALPAAEDGGIAILNADDDAVIAMRHRTRAR-VV 268

Query: 246 TIYSFGKSK---NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM---- 296
           T     +SK    AD+     +  + +  S+      G+ +++     G H   N     
Sbjct: 269 TFALDERSKTGERADYWASDIRLDEVARASFRLHHPYGEPVDIRLGVFGAHQVSNALAAA 328

Query: 297 -------LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                  ++   +  +L   V  +   + V   ++G              T+I++SYNAN
Sbjct: 329 AVAVESGMLPASVARVLGNHVAASANRMDVRTRRDG-------------ATIINDSYNAN 375

Query: 350 PASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           P SM+A I  L+  +    E    AVLG M E+GE S   H +L + L    I H  +  
Sbjct: 376 PESMRAGIDALAYTAGGRPEASSWAVLGQMGELGEESAEEHTELGKFLGTRGIDHAVIVG 435

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +G +  A+ DA     +     E +D    F+   +   DVV+VK+S S G + +   LL
Sbjct: 436 TGVNQRAIADAAREHGVDTRSVEDVDAAVNFVDQHVKPKDVVLVKASYSDGLWAVAEGLL 495

Query: 466 EE 467
            +
Sbjct: 496 AD 497


>gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
 gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
          Length = 461

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 203/463 (43%), Gaps = 64/463 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFIL--HAVQKGAGLVVVNTDMVASIGS--LSIPVFG 87
           +DSR   P   F A+ G H DGHD+    HAV                +GS     P   
Sbjct: 31  VDSRQAVPGGLFVAVVGEHVDGHDYAAGAHAV----------------LGSRPTEAPTIV 74

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D + AL KLA     R  AT++A+TGS GKT TK+ L   LS+   T A  GS+NN +
Sbjct: 75  VRDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTKDYLARILSAAGSTVATSGSFNNEL 134

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLT+ R   +  + + E+G   +G I+ L  +  P +A +  +  AH+  F   + IA
Sbjct: 135 GLPLTVLRAHPETRYLVLEMGARRIGHIKHLCEIAPPDVAAVLNVGTAHIGEFGSRDSIA 194

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------ 261
            AK EI   L+  GT  LN  D     + +++ A     + ++G   +AD   R      
Sbjct: 195 FAKGEIVAALQPEGTAVLNAGDPLVAEMTSRTRA----RVLTWGPD-DADVSERGSEVDD 249

Query: 262 ----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN---MLMTLGIVSILTADVDTAI 314
                ++   +  W  V+LQ           G H AQN          V I  AD+   +
Sbjct: 250 LGRPSFEIGYDDEWYPVRLQQS---------GLHQAQNALAAATMALAVGIPLADIAAGL 300

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            A +   P      R           +++++YNANPAS+ AA+  L+ I      R +AV
Sbjct: 301 SAATASSP-----MRMEVHERADGLIVVNDAYNANPASVVAALESLAVIGRRRHRRTVAV 355

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG-- 432
           LG+M E+G  S   H+ +    +      V + G     + + L        +   DG  
Sbjct: 356 LGEMLELGRESFDGHVRVGRAAARLGTDIVVVVGAAAGGIVEGL----EAVAAWRGDGVV 411

Query: 433 ------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                    +++ +++ GDVV+VK+S+    + + + LL+  P
Sbjct: 412 AEEVEEALEWVRENVLSGDVVLVKASHGVALWEVADALLDTDP 454


>gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. 2_1_7]
 gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
 gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
          Length = 427

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           I+ DSR+      FFA+KG  +DG+ +   A+  G    V+ N D    IG  +I V   
Sbjct: 16  ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G++NNHIG
Sbjct: 71  DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F   E +  
Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ + ++ G IF+  ++ + +     S A GI+ I ++G   +A F   +   C 
Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  + QGK   V  H IG +   N+L  + +        +   +A++ + P   R 
Sbjct: 244 PFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385
           +  +   N+    LI ++YNANP+SMK A+   +   + P     +  +LGDM E+G  S
Sbjct: 304 QFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              H ++ E +       V+L G H   + K+  P +       T + +   ++   + G
Sbjct: 355 DELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMVEELRKQPLKG 407

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K S+S G  +L ++L
Sbjct: 408 YHILIKGSHSMGLEKLADIL 427


>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
 gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
          Length = 453

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 16/394 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   DL + +    + I     + GI+IDSR +   + F    G + DGH++I  A +KG
Sbjct: 3   YLVKDLEKILNAKKVNITSDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEKG 62

Query: 65  AGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   + +  D V+S       +  V+D   A+  LA        A  IAITGS GKTTTK
Sbjct: 63  AAASLSLKDDFVSSNN-----IIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++T  LS+  K +   G++NN +GVPLT+   P D +  + E+G    G++ FL+ LV 
Sbjct: 118 DIITSVLSTKYKVHKTQGNFNNELGVPLTILAAPEDSEILVLEMGADGFGQLDFLSKLVE 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+  VIT I  +H+  F   E IA AK EI  G++K G    N D+    LLK+   +  
Sbjct: 178 PNYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGDEV---LLKSLVDSSD 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T  S G++   D  L  +    ++  ++ +L     +      G H   N++    I 
Sbjct: 235 FNTT-SCGENNYNDIILENYTITRDR--IDFKLNISDEQYFTKLKGKHNLFNIMFATAIA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S +    +   KA+   +  E  G R +    +    +I+++YNA+P SMKA + V+S  
Sbjct: 292 SKIGLTNEEIRKAIE--NTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVVSSF 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                  +  VLG M E+G    ++H ++ E +S
Sbjct: 350 DDF--DFKTLVLGSMFELGPNEVNYHAEVGEYIS 381


>gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
 gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
          Length = 475

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 175/393 (44%), Gaps = 35/393 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +S DSRS  P + F AIKG  +D HDF+     +      V+  +VA + G  S+P   V
Sbjct: 34  VSTDSRSAGPGDLFVAIKGDRFDAHDFLADVAARN-----VSAALVARVPGGWSVPALRV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNN 145
            D    L  LA   R +    ++A+TGS GKTT KEM+     A   +    A  G++NN
Sbjct: 89  ADTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVDARLATAGNFNN 148

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLTL R+       + ELGM+H GE   L  +  P +AV+      H    + +E 
Sbjct: 149 DIGLPLTLFRLNAAHRLAVVELGMNHPGETSLLAKIAEPTVAVVNNAQREHQEFMATVEA 208

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A   A +   L   G      DD++  + +    A G + +         DF L   ++
Sbjct: 209 VALEHASVIHALTPDGIAVFPADDAYASIWRVA--ATGNRIV---------DFALNTAER 257

Query: 266 CSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +E +         + +Q       +    +G H A N L            +D   + L
Sbjct: 258 TTEAAVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALAATSAALAAGVSLDAIKRGL 317

Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375
             F   +GR +    AL      T+ID++YNANP SM+AAI VL S  SP     R+ V+
Sbjct: 318 ESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAIDVLASHASP-----RVLVM 372

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           GDM E+G+    FH ++        I  ++  G
Sbjct: 373 GDMGEVGDNGPEFHREIGAYAKERGIDALYAMG 405


>gi|33603177|ref|NP_890737.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella bronchiseptica RB50]
 gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella bronchiseptica RB50]
          Length = 945

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 17/375 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I   E F A+ G ++DGHD++  A   GA   VV       +  +++P   + 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLG 565

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146
           D L AL ++  A R      ++A+TGS GKTTTKEM++  L+  +      A  G++NN 
Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       +FELGM+H GEI  L  +  P +A++T     H      +E +
Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +   L + G      D+ +  +    +   G + +  FG     D    +    
Sbjct: 686 AHENGAVISALPEDGVAVYPGDEPYAAIWDKLA---GARRVLRFGLQPGLDVYAERVVTQ 742

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   +     S E+     G H  +N L  +       A + T I AL+ F    GR
Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +  ++ G   LID++YNANP S +AAI VL+++       R  VLGDM E+G+   
Sbjct: 803 MQHRQ--MSDGTV-LIDDTYNANPDSARAAIDVLARLP----APRALVLGDMGEVGDNGP 855

Query: 387 SFHIDLAEVLSLYNI 401
           + H ++ +    + I
Sbjct: 856 AMHREVGDYAREHGI 870



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 32/372 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFG 87
           + +DSR I P + F A  G   DG  F+  A+ +GA  ++  T+   VA  G+ ++PV  
Sbjct: 32  LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQ 91

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------ 141
           +  +LGAL       R     +++AITG+ GKT+  + L   L+ + K    IG      
Sbjct: 92  LRTLLGALAD-EWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALL 150

Query: 142 ----SYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITT 191
               S    +  P  LT+ R              L  S +G E   L H +R  +A  T 
Sbjct: 151 PDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDH-IRIAVAGFTN 209

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     ++    AKA +F+  +    + +N DD   E L A   A  +KT YS  
Sbjct: 210 LTRDHLDYHGTMQRYEQAKAALFQWPDLQAAV-VNADDPAGERLLASLPA-ALKTGYSL- 266

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   AD   R  +  +      + L     ++V   +G H   N+L+  G +S L   + 
Sbjct: 267 QGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGWPLP 326

Query: 312 TAIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              + L+   P +GR +       ++  A  QG   ++D  Y   P ++  A++ L  ++
Sbjct: 327 QIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVD--YAHTPDALARALTALRPVA 384

Query: 365 PHGEGRRIAVLG 376
               GR + V G
Sbjct: 385 QARGGRLVCVFG 396


>gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
 gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
          Length = 432

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 192/386 (49%), Gaps = 26/386 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G     +  VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +V P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L K    T+F+++D+++   +    + +   T   +Y  G+ + N+ +   +W
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAEGLNLIPYGTEDDLYVNGRITGNSPYLTFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K   +         GKS +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 254 KAGKD---------GKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382
             R +  +   N    TLI ++YNANP SM AA+     +  PH    ++ +LGDM E+G
Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH----KMLILGDMRELG 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
             S + H  +A+ L       VWL G
Sbjct: 357 AESAAEHQKIADYLKECAFEKVWLVG 382


>gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
 gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
          Length = 427

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           I+ DSR+      FFA+KG  +DG+ +   A+  G    V+ N D    IG  +I V   
Sbjct: 16  ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G++NNHIG
Sbjct: 71  DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F   E +  
Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ + ++ G IF+  ++ + +     S A GI+ I ++G   +A F   +   C 
Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  + QGK   V  H IG +   N+L  + +        +   +A++ + P   R 
Sbjct: 244 PFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385
           +  +   N+    LI ++YNANP+SMK A+   +   + P     +  +LGDM E+G  S
Sbjct: 304 QFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              H ++ E +       V+L G H   + K+  P +       T + +   ++   + G
Sbjct: 355 DELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMTEELRRQPLKG 407

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K S+S G  +L ++L
Sbjct: 408 YHILIKGSHSMGLEKLADIL 427


>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
 gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
          Length = 560

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 132/519 (25%), Positives = 219/519 (42%), Gaps = 93/519 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R +     F    G   D H FI  A ++GA   +   D+   +G    P  
Sbjct: 47  IAGVVTDNRQVERDFLFIPFVGEKVDAHRFIPQAFEQGAACSLSEEDLTDPVG----PCI 102

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+    AL  +A   R + K  ++ I GSVGKT+TKEM+   LS         G++NN 
Sbjct: 103 RVESSQRALMDIAAYYRRQLKLPLVGIIGSVGKTSTKEMVASVLSRHYSVLKTEGNFNNE 162

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P+T+ ++       + E+G+ + G++  L  + RP+I VIT I  AHL      + I
Sbjct: 163 IGMPMTVLKIRDHHQVAVVEMGIDNFGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGI 222

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA------LGIKTIYS----------- 249
            ++K E+F+ L    ++ LN DD     ++    A      LG+ +  +           
Sbjct: 223 LASKTEVFDYLADGASVILNGDDDHLNCIRRAGGARIIFYGLGVDSSAAAREKDKDKLAR 282

Query: 250 --------FGKSKNAD------FQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGI--- 288
                     K+K+ D      F +       ++ + +++    L    ME +       
Sbjct: 283 LNGQIAEHLAKAKDRDGLADGCFDMSAAYTDQERLARETYRAENLSALGMEGMSASFITP 342

Query: 289 -----------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H   N L    +   L  D+D     +       GR       L+ G
Sbjct: 343 EGDFEAVIPIPGEHNVYNALAAAAVGQSLGLDLDEIKAGMETASTISGRAH----FLHLG 398

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             TLID+ YNANP+SM+A+++VL++     +GRRIAVLGDM E+GE + + H +L E  +
Sbjct: 399 GLTLIDDCYNANPSSMRASLAVLAR----AKGRRIAVLGDMGELGENAPAMHYELGERAA 454

Query: 398 LYNISHVWLSGFHVLALKDALPRS----------------------------IHVHYSET 429
              I  ++ +G    AL   + R                             + ++    
Sbjct: 455 EEGIDMLYAAG----ALGREIARGASDASLNRREEGAFFAEEGGGAHRREKPMEIYACPD 510

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            D L   +   L +GD V+VK+S+  GF  ++  + E +
Sbjct: 511 RDALLADLLGRLKEGDTVLVKASHFMGFEEVVKAIQESY 549


>gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
 gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 212/448 (47%), Gaps = 42/448 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR+      F A+KG +++G+ F   A++ G+   +V+       G     +  V
Sbjct: 15  GVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAGDTHYIL--V 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  L +LA   R R    II ITG+ GKTTTKE+++  LS         G+ NN IG
Sbjct: 73  DNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +   HL  F   E +  
Sbjct: 133 VPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVIR 192

Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNA 256
            K E+++ L + G  TIF++ D+ +   L     A G+  I S+G+          + N+
Sbjct: 193 TKGELYDYLRQKGDSTIFIHQDNPYLTKL-----AWGLNPI-SYGEQDGLYVNGHVTGNS 246

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            + + +WK   E S  EV  +          IG +   N L  + I      + +   +A
Sbjct: 247 PYLIFEWKSGKEGSLHEVHTR---------LIGEYNLSNALAAVTIGCFFGVEPEKIDQA 297

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ + P+  R +  + A N    TLI ++YNANP SM A+IS    +     G+++ +LG
Sbjct: 298 LNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILG 350

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ S   H  + + L   +   V L G    A +   P      Y +    L   
Sbjct: 351 DMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPT-----YPDA-PALITE 404

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +Q +   G  +++K SN      +++ L
Sbjct: 405 LQKNKPCGKTILIKGSNGIKLNTVVDYL 432


>gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
 gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
          Length = 471

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 212/458 (46%), Gaps = 33/458 (7%)

Query: 23  PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V G  + DSR + P   F A  G   DGHDF    V+ GA  V+ +         +
Sbjct: 23  PSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAAAVVEAGAAAVLASR-------PV 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P   V DV  AL  LA     +   T++A+TGS GKT+TK+++   L     T    G
Sbjct: 76  GVPAIVVPDVQAALGALARHVVRKLGTTLVALTGSAGKTSTKDLVAQVLRRKAPTVFTPG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           S NN IG+PLT      +  F + E+G   +G IR+LT L  P I ++  +  AH+  F 
Sbjct: 136 SLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYLTGLTPPKIGLVLNVGTAHIGEFG 195

Query: 202 GIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           G E+IA AK E+ E L   E+ G   LN DD     + +++ A     +  FG+S  AD 
Sbjct: 196 GREQIAQAKGELVEALPSAEEGGAAILNADDPLVRAMASRTKA----RVILFGESGEADV 251

Query: 259 QLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +        + Q    +     + +V     G H   N L    +   L   V     AL
Sbjct: 252 RAENVTLTDAGQPAFRLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSVSEIATAL 311

Query: 318 SVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AV 374
           S    + G   R+R  + +     T+++++YNANP SM+AA+  L+ +   G+GRR  AV
Sbjct: 312 S----EAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM---GKGRRTWAV 364

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSE 428
           LG M E+G+ + + H  +  +    N+  +   G        + A  +       VH S+
Sbjct: 365 LGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHVSD 424

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + L ++S L  GDVV+VK+S S G   +   LL+
Sbjct: 425 AQAAIDL-LRSQLRPGDVVLVKASRSVGLESVAQALLD 461


>gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis ES14902]
          Length = 452

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
 gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
          Length = 432

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 209/448 (46%), Gaps = 42/448 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR+      F A+KG  ++G+ F   A++ G+   VV+    A  G     +  V
Sbjct: 15  GVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAGDTHYIL--V 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  L +LA   R +    II ITG+ GKTTTKE+++  LS        +G+ NN IG
Sbjct: 73  DNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNLNNPIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + + G+ E+G SH G+I+ L  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPLTLLRLKAEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIR 192

Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNA 256
            K E+++ L + G  TIF++ D+ +   +     A G+  + ++G+          + N+
Sbjct: 193 TKGELYDYLRRQGNSTIFIHQDNPYLTQI-----AWGLNPV-TYGEEDNLYINGHVTGNS 246

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            +   +WK        EVQ Q          IG +   N L  + I      +     KA
Sbjct: 247 PYLTFEWKAGKAGERHEVQTQ---------LIGDYNFPNALAAITIGHFFGVEAAKIDKA 297

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  + P+  R +  + A N    TLI ++YNANP SM AAIS    +     G ++ +LG
Sbjct: 298 LHEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLAAISNFHNMQ---AGGKMLILG 350

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ S   H  + + L  Y    V L G    A +   P      Y +    L   
Sbjct: 351 DMRELGKDSPGEHQKIVDCLEEYGFKDVALVGELFAATRHTYPT-----YPDA-PALIAE 404

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +Q +   G  +++K SN      +++ L
Sbjct: 405 LQKNKPCGKTILIKGSNGIKLNTVVDYL 432


>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
 gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
          Length = 482

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 208/461 (45%), Gaps = 23/461 (4%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           H +G  P   +  ++ DSR++ P + F A+ G  +D HDF+   V +GA  V+V+  +  
Sbjct: 22  HLVG--PDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLAG 79

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--- 133
           ++    + V  V D   AL +LA   R +    ++A+TGS GKTT KEM++   +     
Sbjct: 80  ALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFARAVGE 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           +   A  G+ NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I    
Sbjct: 140 EARLATAGNLNNDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLATIAQPTVALINNAQ 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYS 249
             H      +E +A   A +   L   G      D +    +  L +A   A G + +  
Sbjct: 200 REHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLD 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG    A          ++   ++V             +G H A+N L            
Sbjct: 257 FGIEGGAVSA--TVTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAATACSLAAGIA 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   +ALS F P +GR +R +  ++ G   ++D++YNANP S++AAI  L+ +      
Sbjct: 315 PEVIAQALSAFAPVKGRLQR-KPGVHGGL--VVDDTYNANPDSVRAAIDALATLP----A 367

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            R  VLGDM E+G    +FH ++        I  V  +G     + DA       H++ +
Sbjct: 368 PRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLATGELARHMVDAFGSGAR-HFA-S 425

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 426 AEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
 gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
          Length = 452

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAA+ VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis 961-5945]
          Length = 452

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAA+ VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|33598266|ref|NP_885909.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella parapertussis 12822]
 gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella parapertussis]
          Length = 945

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 17/375 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I   E F A+ G ++DGHD++  A   GA   VV       +  +++P   + 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLG 565

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146
           D L AL ++  A R      ++A+TGS GKTTTKEM++  L+  +      A  G++NN 
Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       +FELGM+H GEI  L  +  P +A++T     H      +E +
Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +   L + G      D+ +  +    +   G + +  FG     D    +    
Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLA---GARRVLRFGLQPGLDVYAERVVTQ 742

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   +     S E+     G H  +N L  +       A + T I AL+ F    GR
Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +  ++ G   LID++YNANP S +AAI VL+++       R  VLGDM E+G+   
Sbjct: 803 MQHRQ--MSDGTV-LIDDTYNANPDSARAAIDVLARLP----APRALVLGDMGEVGDNGP 855

Query: 387 SFHIDLAEVLSLYNI 401
           + H ++ +    + I
Sbjct: 856 AMHREVGDYAREHGI 870



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 32/372 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFG 87
           + +DSR I P + F A  G   DG  F+  A+ +GA  ++  T+   VA  G+ ++PV  
Sbjct: 32  LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQ 91

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------ 141
           +  +LGAL       R     +++AITG+ GKT+  + L   L+ + K    IG      
Sbjct: 92  LRTLLGALAD-EWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALL 150

Query: 142 ----SYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITT 191
               S    +  P  LT+ R              L  S +G E   L H +R  +A  T 
Sbjct: 151 PDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDH-IRIAVAGFTN 209

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     ++    AKA +F+  +    + +N DD   E L A   A  +KT YS  
Sbjct: 210 LTRDHLDYHGTMQRYEQAKAALFQWPDLQAAV-VNADDPAGERLLASLPA-ALKTGYSL- 266

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   AD   R  +  +      + L     ++V   +G H   N+L+  G +S L   + 
Sbjct: 267 QGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGWPLP 326

Query: 312 TAIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              + L+   P +GR +       ++  A  QG   ++D  Y   P ++  A++ L  ++
Sbjct: 327 QIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVD--YAHTPDALARALTALRPVA 384

Query: 365 PHGEGRRIAVLG 376
               GR + V G
Sbjct: 385 QARGGRLVCVFG 396


>gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
 gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
          Length = 607

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 200/421 (47%), Gaps = 43/421 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F + L+ +Q           +  + +DSR +     FFAI     +G+ ++   + KGA 
Sbjct: 190 FEEFLKKVQ-----------IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGAS 234

Query: 67  LVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           LV+  NTD+          V  V D +  +  LA   R +    ++ ITGS GKTTTK++
Sbjct: 235 LVIADNTDIKDK------RVIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDI 288

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   KT    G+YNNHIG+P TL  +  +  F + E+GMS LGEIR L  +  P+
Sbjct: 289 VYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPN 348

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  +H+      + +  AK E+ E ++K  T F+  DD +   L          
Sbjct: 349 YAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKENT-FVCGDDEYLGKLDVNKVGFNGN 407

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +   K ++ DF  +  K   +    E+ L GK   + +  I   +A+ + +T      
Sbjct: 408 NTH---KIESYDFSNKGSKFILDGKEYEMSLLGKH-NISNTSIAIELAKKIGLT------ 457

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++   +K + + +       R++  +  G    I+++YNA+P SMKAAI  L++I  
Sbjct: 458 -DEEIQKGLKEIKISNM------RFQ-EIKIGNDIYINDAYNASPMSMKAAIDTLNEI-- 507

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           + +  +IA+LGDM E+GE    +H+D+   L    I  ++L G  +    D   ++    
Sbjct: 508 YNDKYKIAILGDMLELGENEVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEE 567

Query: 426 Y 426
           Y
Sbjct: 568 Y 568


>gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 428

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 210/434 (48%), Gaps = 28/434 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  ++G+ F   A+ +G    VV+    A   S  +    VD
Sbjct: 16  VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGESYIL----VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R + K  II ITG+ GKTTTKE+++  LS   K     G+ NNHIGV
Sbjct: 72  DCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 132 PLTLLRLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNVGKAHLLGFGSFEGVIKT 191

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L + G  TIF+  ++S+   L A +H L       +G++    F   K   CS
Sbjct: 192 KGELYDFLREKGNATIFIQNENSY---LNAIAHGL---HCVRYGQASGL-FVSGKLLSCS 244

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E   +  +  V  H IG +   N L ++ +        +   +ALS + P+  R 
Sbjct: 245 PFLAFEWMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDICEALSTYMPQNNRS 304

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386
           +     ++ G   LI ++YNANP SM AA+    Q+ +PH    ++ +LGDM E+GE S 
Sbjct: 305 Q----LVDTGRNKLIVDAYNANPTSMMAALENFRQVQAPH----KMVILGDMKELGEASL 356

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +   L       V L+G    A+  A     + H+ + +D +   ++ S   G  
Sbjct: 357 EEHRKIVGFLDGCRFDRVMLAGPEFKAVASA-----YEHF-DNVDAVKEALEKSKPVGFT 410

Query: 447 VVVKSSNSCGFYRL 460
           +++K SNS    +L
Sbjct: 411 ILIKGSNSMKLSQL 424


>gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
 gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
          Length = 463

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 178/362 (49%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 35  VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 91

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 92  --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 150 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 209

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 210 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 269

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 270 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFS 325

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SM+AAI VL+++       RI V+GDM E+
Sbjct: 326 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMGEL 378

Query: 382 GE 383
           GE
Sbjct: 379 GE 380


>gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 503

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 24/374 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV  GA  V+V+  + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVACGASGVLVDRLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             V++   AL ++A A   R +AT ++A+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VVVNNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D D  I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256
              +  +A  K  I+  L   G   +N DD+F   FE  + +S  +  + +  +G   +A
Sbjct: 198 LGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGVQASA 256

Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +   R+ +       +  V  QG++ ++     G H   N L   G+   L A +   + 
Sbjct: 257 EITARQLRLHPGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A  +   +   G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VL
Sbjct: 314 AAGLAQARPVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368

Query: 376 GDMCEMGELSQSFH 389
           GDM E+G    + H
Sbjct: 369 GDMRELGAEGVALH 382


>gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 177/362 (48%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAALDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G  +IA AK+EI++GL + G   +  +D    + +  S     +T        +A+  + 
Sbjct: 199 GTNDIAKAKSEIYQGLGEDGLALIPCEDEHAAVFQTSSQGHQQQTFGVDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       +D   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAGALALAAGLSLDDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis G2136]
          Length = 436

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 8   VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 64

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 65  --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 122

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 182

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 183 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 243 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 298

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAA+ VL+++       RI V+GDM 
Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMG 349

Query: 380 EMGE 383
           E+GE
Sbjct: 350 ELGE 353


>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 211/448 (47%), Gaps = 22/448 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR++ P + F  + G  +DGH+F+  A  KGA  ++    +     S  IPV  V 
Sbjct: 28  IQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKGASAIIAQQPLFDL--SAGIPVLLVQ 85

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R     T++A+TGS GKT+TKE +   L    +      ++NN +GV
Sbjct: 86  DTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKECIAGVLGRRGQAAKSYKNWNNRLGV 145

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL +     + +F + E G+S  GE+  L  ++ P +AV+T +AP HL     +  +   
Sbjct: 146 PLNILSFSGEEEFWVLEAGISEPGEMAALASIIAPDVAVVTNVAPVHLEGLVDVPTVVEE 205

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  + + L   GT+ L+ D  + EL +  + A+  KT +S  +++ A +     +     
Sbjct: 206 KLHLCDHLTHNGTLVLSVD--YPELSQRAASAVCPKTYFSV-QAEKAPYWCEPIQDPEVY 262

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              ++   G   E        +MA+N+     +   L  +V+  +  L      E RG+ 
Sbjct: 263 GRFQLSCDGVRTEFDLPWAADYMAENLAAAACVGHRLGLEVEEIVAGLQTAELPEHRGQL 322

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               L  G   +ID++YNANP SM+ AI   ++ +  GE   + VLG+M E+G  +++ H
Sbjct: 323 L--TLPGGI--VIDDAYNANPHSMQRAIRAAARRA--GERPLVLVLGEMAELGPDAEAAH 376

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK------DALPRSIHVHYSETMDGLF-LFIQSSLV 442
             L  V+     + V+  G H  A+       D   R   V   + ++  +  F + S  
Sbjct: 377 TQLGRVVGAVAPTAVYYQGEHADAVDCGAREVDPDLRIQRVRSPQDLENAWGAFAKRS-- 434

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +V+VK S S    + I +L +EF A
Sbjct: 435 --PLVLVKGSRSGRMEQYIQVLQKEFGA 460


>gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis 8013]
          Length = 452

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 178/362 (49%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SM+AAI VL+++       RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 482

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 220/471 (46%), Gaps = 42/471 (8%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V+G + IDSR   P   F A+ G   DGHDF   AV  GA   +V+  + A     
Sbjct: 23  PEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFAASAVADGAAAALVSRPVDAP---H 79

Query: 82  SIPVFGVDDVLGALNKLA--VAARLR------SKATIIAITGSVGKTTTKEMLTIALSSI 133
            +   G + V+ AL +LA  VA  L        +A ++A+TGS GKTTTK+++   ++ +
Sbjct: 80  LLAEGGDEGVVAALTRLARHVARELSDPRRGAERAEVVAVTGSSGKTTTKDLIAQVVARM 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T A  GS+NN IG PLT+ R      + + E     +G I  L  +  P I V+  + 
Sbjct: 140 GPTVAPAGSFNNEIGHPLTVLRADTGTRYLVLEAAARGIGHIAHLCGVAPPRIGVVLNVG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSHALGIKT 246
            AH+  F   + IA AK E+ E L          G   LN DD     + A++ A     
Sbjct: 200 SAHMGEFGDRDAIAKAKGELVEALPPGAADRGAGGVAVLNADDPRVNAMAARTRA----R 255

Query: 247 IYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + ++G  ++A  +      ++    S+  + L G++  V    +G H   N L    +  
Sbjct: 256 VVTYGLGEDATVRATDVVMRETGAPSFT-LHLAGRTARVELALVGAHQVHNALAAAAVAD 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQI 363
            L   VD   +AL    P      R+R  + +    TL++++YNANP SM+AA++ L  +
Sbjct: 315 ELGMGVDEIAEALGAATPV----SRWRMEVTEHAGATLVNDAYNANPESMRAALTTLGAL 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------ALK 415
           +   + R IAVL  M E+GE     H  + E+ +   ++H+ + G            A +
Sbjct: 371 AR--DRRSIAVLAHMAELGEGGGVEHERIGELAARTGVAHLVVVGEAAEGIAVGAEGAAR 428

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             L +   V  ++  +     +++ +  GDVV+VK S   G  R+I+L+ E
Sbjct: 429 QGLWQGECVRVADVHE-AAAAVRARMRTGDVVIVKGSRVAGLERVIDLITE 478


>gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
 gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
          Length = 417

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 185/381 (48%), Gaps = 29/381 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R I   + F+A+ G ++DG++++  A+ KGA   V +     +  S+++    V
Sbjct: 13  GVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVTV----V 68

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L  LA   R      II++TGS GKTTTKE++   L         +G+ NNHIG
Sbjct: 69  EDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQQFNVKGTLGNLNNHIG 128

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+       + G+ E+G +HL EI  L+ +  P   +IT    AHL  F   + I  
Sbjct: 129 VPLTILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGLITNYGKAHLEGFGSEKNIII 188

Query: 209 AKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E+FE L+  G T  + + D   E LK    + GI+   +   S          K   
Sbjct: 189 GKSELFEHLKAHGKTAIVGHWDQ--EQLK---RSQGIERFITSTDS----------KLIK 233

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            + ++ ++ +G+  +     IG +   NML+   +  I      + +  LS + P   R 
Sbjct: 234 AEPYISLEFEGQKSDT--QLIGEYNYHNMLLAAAVGQIFNMSTTSILNGLSQYTPNNNRS 291

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +      +I ++YNANP+SM  A   LS +S   E  +IAVLGDM E+G+ S++
Sbjct: 292 Q----IIQSDNVKIILDAYNANPSSMSVA---LSNLSKQKESHKIAVLGDMFELGKYSKT 344

Query: 388 FHIDLAEVLSLYNISHVWLSG 408
            H  + ++     +   +L G
Sbjct: 345 EHQKIVDLTKQLGLDQTYLIG 365


>gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
          Length = 468

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 176/375 (46%), Gaps = 31/375 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S G  ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----STGEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+     A   ++   A  G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++           GI  + + G ++  DF L    + 
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY----------AGIWRVAATG-NRIVDFALHGLGRD 253

Query: 267 S--------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +        + S + +      ++V  + +G H A+N L            +      L 
Sbjct: 254 TPAAVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNALAATAAALAAGVPLAAVKAGLE 313

Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F P +GR +    AL      T+ID++YNANP SM+AAI VL+  S      R+ V+G+
Sbjct: 314 AFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACS----APRVLVIGE 369

Query: 378 MCEMGELSQSFHIDL 392
           M E+G+   +FH ++
Sbjct: 370 MGEVGDEGPAFHREI 384


>gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
 gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
          Length = 482

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 203/473 (42%), Gaps = 52/473 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P     G+ IDSR++ P   F A  G   DG+ F   A++ GAG VV+  +    +  L+
Sbjct: 22  PDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRELVDLA 81

Query: 83  IP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +     +   +D    L +LA   R R + T+I ITGS+GKTTTK++L   L+   + +A
Sbjct: 82  LEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAKRYRVHA 141

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++N+ IG+PLT+   P D    + E+GMS  GEI  L+   +P   +IT +  +H+ 
Sbjct: 142 TAGNFNSLIGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQPTFGIITKVGTSHIG 201

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIF--------LNYDDSFFELLKAKSHALGIKTIYSF 250
                E IA AKAEI  G+  +   F        L+ +D F   +           I +F
Sbjct: 202 MLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFI-----------IENF 250

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNML 297
            +    D  L       +     ++L              G S +      G     N L
Sbjct: 251 ARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQSVPNAL 310

Query: 298 MTLGIVSILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
               +   L     ++D A   L +       G+R +         +ID+SYNA+P SM 
Sbjct: 311 FAAAVAHRLGVPGFEIDEAFGELQM------TGRRTQVRHAACGARVIDDSYNASPESMA 364

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLA 413
           A +++ S +   G   RIAVLG+M E+G+ ++  H  +    +    S  + + G +   
Sbjct: 365 AGLNLFSTLPCTGS--RIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARV 422

Query: 414 LKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           + DA          V    + D L       + + D+V+VK S   G  R + 
Sbjct: 423 MADAARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLVKGSRFVGLDRFVE 475


>gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 432

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 212/442 (47%), Gaps = 32/442 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G     +  VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +  P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L K    T+F+++D+++   +    + +   T   +Y  G+ + N+ +   +W
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAEGLNLIPYGTEDDLYVNGRITGNSPYLTFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K   +         GKS +V    IG +   N L  + I      +     +ALS + P+
Sbjct: 254 KAGKD---------GKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALSGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382
             R +  +   N    TLI ++YNANP SM AA+     +  PH    ++ +LGDM E+G
Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH----KMLILGDMRELG 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  +A+ L       VWL G    A + +     +V   E +  L    ++   
Sbjct: 357 AESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQTYPNVQ--EVIKEL----EADKP 410

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN      +++ L
Sbjct: 411 KGYTILIKGSNGIKLCSVVDYL 432


>gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
 gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 179/385 (46%), Gaps = 17/385 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  ++ D+R +     F A+KG  +D HDF  +A+  GAG ++V+  ++     + +P 
Sbjct: 1   MITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSKRLL-----VDVPQ 55

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL + A   R +    ++A+TGS GKT+ KEM    L          G++NN
Sbjct: 56  IVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNN 115

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  
Sbjct: 116 DIGVPLTLLRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALVNNLAAAHLEGFGSLAG 175

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A AK EIF GL   G   +N D   +   +     L  K ++ F      D        
Sbjct: 176 VAQAKGEIFAGLPANGIAIINADSHDWSHWQT---TLAHKQVWRFSPLGGEDIDFYATDL 232

Query: 266 CSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             EQ  M   L      VV      G H   N L    +   + AD+D     LS     
Sbjct: 233 RIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADLDAVRVGLSQLKAV 292

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR   +   L  G   L+D++YNAN  SM AA+ VL+++     G R+ V GDM E+GE
Sbjct: 293 PGR--LFPLVLADGKL-LLDDTYNANVGSMTAAVQVLAEMP----GYRVMVAGDMAELGE 345

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            ++  H  +     L  I  V   G
Sbjct: 346 TAEDCHRQVGNAAKLSGIDKVLTVG 370


>gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium resistens DSM 45100]
          Length = 516

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 203/467 (43%), Gaps = 45/467 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----- 84
           +  DSR I P   F A+ G   DGHD+   A ++GA L+VV   + A   +L  P     
Sbjct: 43  VEFDSRRIKPGGIFMALPGAQVDGHDYAASAAEQGAALLVVGKRVGAP--ALVAPSVELR 100

Query: 85  -------VFGVDD------VLGALNKLAVAARLRSKA-------TIIAITGSVGKTTTKE 124
                   F  D       VL A+++LA   R  + A       T++ +TGS GKT+TK+
Sbjct: 101 QEASNASAFEHDTQGHGAAVLAAIDRLA---RFNTDALVAEHGMTVVGVTGSAGKTSTKD 157

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L     T A  GS+NN IG+P T  R      + + E+    +G IR LT +  P
Sbjct: 158 LIGAILREAGPTVAPPGSFNNEIGLPYTALRAEEGTKYLVSEMSARGVGHIRHLTEVTPP 217

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +I V+  +  AHL  F   + IA AK E+ E L + G   LN DD     + A++HA  +
Sbjct: 218 NIGVVLNVGSAHLGEFGSRDAIAQAKGELVEALPENGLAVLNADDDKVAAMAARTHARVV 277

Query: 245 K------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQN 295
           +      T    G+    D+      Q  E +     L    G  + V     G H   N
Sbjct: 278 RFSTSQETCEWAGREVAVDYYASDI-QLDEVARARFALHHPYGDPVAVELGVFGAHQVSN 336

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +            +AL+            R     G  T+I++SYNANP SM+A
Sbjct: 337 ALAAAAVGMECGMSATDVARALNGHVAASVNRMDVRTRARDG-VTIINDSYNANPESMRA 395

Query: 356 AISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVL 412
            I  L+  +   +G    AVLG M E+G+ +   H DL   LS   I H  +  +G +  
Sbjct: 396 GIDALAYTASGRDGAESWAVLGQMGELGDDATEAHADLGHSLSQRRIRHAVIVGNGVNQQ 455

Query: 413 ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           AL  A     +  H  E  D    F+  SL   DVV+VK+S S G +
Sbjct: 456 ALAHAAREDGVDTHVVEDADAAVNFLDLSLRKSDVVLVKASYSDGLW 502


>gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
 gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
          Length = 475

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 210/448 (46%), Gaps = 42/448 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI+ DSR+      F A+KG  ++G+ F   A++ G+   VV+    A  G     +  V
Sbjct: 58  GITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAGDTRYIL--V 115

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  L +LA   R +    II ITG+ GKTTTKE+++  LS        +G+ NN IG
Sbjct: 116 DNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNLNNPIG 175

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + + G+ E+G SH G+I+ L  +  P   +IT +  AHL  F   E +  
Sbjct: 176 VPLTLLRLTTEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIR 235

Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------NA 256
            K E+++ L + G  TIFL+ D+ +      +  A G+  I ++G+            N+
Sbjct: 236 TKGELYDYLRRQGNSTIFLHQDNPYL-----REIARGLNPI-TYGEENSLYINGHVTGNS 289

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            +   +W+   E  + +V  +          IG +   N L  + I      + +   KA
Sbjct: 290 PYLAFEWRAGKEGEFHQVHTR---------LIGEYNFPNALAAVTIGHFFGVEAEKIDKA 340

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ + P+  R +  + A N    TLI ++YNANP SM AAI     +      +++ +LG
Sbjct: 341 LNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLAAIGNFRNMQAE---KKMLILG 393

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ S   H  + + L  Y    V L G    A      R  +  Y +    L   
Sbjct: 394 DMRELGKDSAEEHQRIVDYLEEYGFEDVILVGELFAAT-----RHTYTTYPDA-PALIAA 447

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +Q +   G  +++K SN      +++ L
Sbjct: 448 LQKNKPCGKTILIKGSNGIKLNTVVDYL 475


>gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M6190]
          Length = 436

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 8   VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 64

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 65  --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 122

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+   F 
Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 182

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 183 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 243 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 298

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 349

Query: 380 EMGE 383
           E+GE
Sbjct: 350 ELGE 353


>gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 452

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 177/362 (48%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  +A A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +G   R    +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+
Sbjct: 315 NIKG---RLNVKVGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis WUE 2594]
          Length = 452

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  +A A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 176/375 (46%), Gaps = 31/375 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S G  ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----STGEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+     A   ++   A  G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++           GI  + + G ++  DF L    + 
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY----------AGIWRVAATG-NRIVDFALHGLGRD 253

Query: 267 S--------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +        + S + +      ++V  + +G H A+N L            +      L 
Sbjct: 254 TPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPLAAVKAGLE 313

Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F P +GR +    AL      T+ID++YNANP SM+AAI VL+  S      R+ V+G+
Sbjct: 314 AFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACS----APRVLVIGE 369

Query: 378 MCEMGELSQSFHIDL 392
           M E+G+   +FH ++
Sbjct: 370 MGEVGDEGPAFHREI 384


>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
          Length = 456

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 176/360 (48%), Gaps = 16/360 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   F A++G  +DG+ ++  A +KGA + +      A       PV  VD
Sbjct: 29  VSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIAL------AERPCPGWPVVLVD 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL  LA A R R    ++ +TGSVGKT+TKEM+   LS   +T    G+ NN IG+
Sbjct: 83  DAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEGNLNNLIGM 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+++  +    +  +FE+GMS  GEI  L+ +  P I VIT I  +H+      E I  A
Sbjct: 143 PMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVITNIGVSHIEMLGSQENILKA 202

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI +G+   G + LN DD     ++     +    I + G +  A+    + +  +E 
Sbjct: 203 KLEILDGMRPGGKLILNGDDPLLAGVQTDKAEVITYGIENTGCAYTAE----EVESGAEG 258

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   ++  G S+       G H   N L    +  +L  + DT       + P   R K 
Sbjct: 259 TAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRVLGMEPDTIAAGFLQYAPTGYRQKI 318

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R     G  T +++ YNA+P SM++A  VL  +     GRR+AVL DM E+G+ +   H
Sbjct: 319 ERV----GGVTFVEDCYNASPDSMRSAFDVLRTVQKT--GRRLAVLADMLELGDTAPDAH 372


>gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240355]
          Length = 436

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 178/365 (48%), Gaps = 25/365 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIP 84
            V+ I  DSR     + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L   
Sbjct: 7   LVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK-- 64

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIG 141
              VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G
Sbjct: 65  ---VDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAG 121

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NF 200
           ++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++  +  AH+   F
Sbjct: 122 NFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNVLRAHVGCGF 181

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  +
Sbjct: 182 DGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIV 241

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K   C      ++    +   VV    G H   N      +       ++   + L  F
Sbjct: 242 LKPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGF 297

Query: 321 HPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM
Sbjct: 298 SNIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDM 348

Query: 379 CEMGE 383
            E+GE
Sbjct: 349 GELGE 353


>gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 496

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 182/378 (48%), Gaps = 34/378 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR +     F AI G H DGHDF+  A ++GA   +V  ++  A I  + +P     D 
Sbjct: 36  DSRQVVDGALFVAIAGEHVDGHDFVDAAARQGAAAALVEREIKSAPIAQIVVP-----DT 90

Query: 92  LGALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           + AL  LA A     KA     TII ITGSVGKTTTK++L   LS+  +T A  GS+NN 
Sbjct: 91  VAALGALAKANLEARKAIDEPFTIIGITGSVGKTTTKDLLHALLSTQGETVAPKGSFNNE 150

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT  ++     + + E+G +H+GEI  LT +  P IAV+  +  AHL  F  +E I
Sbjct: 151 IGLPLTALKVGERTRYLVAEMGANHIGEIARLTKIAPPDIAVVLKVGVAHLGEFGSVERI 210

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK+EI  G        LN DD   E + A S  +    ++ FG  K     +  +   
Sbjct: 211 AQAKSEIVRGEAPNAITVLNADD---ERVAAMS-GIAKGDVFWFGIDKAQAHDIDGYMAA 266

Query: 267 SEQSWME--------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            + +  +        V  QG    V     G H   N L    +  +L   ++   + L+
Sbjct: 267 DDIALDDLGHPVFELVSSQGVEQRVSLGIGGRHNVMNALAAASVAKLLGMPLERIAQVLA 326

Query: 319 VFHPKEGRGKRYRCALNQ-----GFFTLIDESYNANPASMKAAISVLSQISPHGEGR--R 371
                  R   +R A+++       FTLID+S+NANP SM+A I  L       + +  R
Sbjct: 327 DTR----RISPHRMAVSEVERDGARFTLIDDSFNANPDSMRAGIDGLMAWRSQEDQQPYR 382

Query: 372 IAVLGDMCEMGELSQSFH 389
           +AVLG M E+G    + H
Sbjct: 383 VAVLGSMLELGSDEHNLH 400


>gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis OX99.30304]
          Length = 452

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 178/362 (49%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  +A A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A+I     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALINNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
 gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
          Length = 453

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 209/458 (45%), Gaps = 44/458 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ++ D+R I P   F A+KG  +D HDF   A+  GAG ++V+  +      L  P  
Sbjct: 24  INEVTTDTRQITPGCLFVALKGERFDAHDFAADALAAGAGALLVSKRL-----PLGAPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R +  A ++A+TGS GKT+ KEM    L    +     G++NN 
Sbjct: 79  VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGEVLYTAGNFNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+    DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264
           A AK EIF GL   G   +N D++ +   + +   L  KT++ F    +   DF      
Sbjct: 199 AQAKGEIFAGLPADGVAIINADNNDWPHWQTQ---LVGKTVWRFSPQATDGVDFFAS--- 252

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSILTADVDTA 313
                   E+ + GK  +   H             G H   N L    + + + A ++  
Sbjct: 253 --------EISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAAALATSVGASLEAV 304

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L       GR   +   L  G   L+D+SYNAN  SM AA  VL+++     G R+ 
Sbjct: 305 RVGLGQLQAVPGR--LFPIQLKPGQL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVL 357

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V GDM E+G+ ++  H  + E   L  I  V   G     L  A  +  H      +   
Sbjct: 358 VAGDMAELGDEAEECHRQVGEAARLAGIDKVLTVGSLSQLLSAASGQGEHFQDKAAVIAR 417

Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              L  + +++    V++K S S    +++  L E+ P
Sbjct: 418 VAELLTEHTVI---TVLIKGSRSAAMEQVVRALQEKAP 452


>gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
 gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
          Length = 466

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 207/452 (45%), Gaps = 29/452 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P + F A+KG  +D HDFI   V +GA  V+V+ D+ A + ++  P     
Sbjct: 32  VHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVSRDVDAGVPAIVAP----- 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL +L    R +     +A+TGS GKTT KEM+    ++     +  A  G+ NN 
Sbjct: 87  DTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRLATGGNLNND 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R+       + ELGM+H GE  +L  + +P +AV+T     H      +E +
Sbjct: 147 IGLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTVAVVTNAQREHQEFMVSVEAV 206

Query: 207 ASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           A   A     L   G  +F   ++S  +       A G + + SFG +  AD Q      
Sbjct: 207 AHEHAAAIAALPADGVAVFPLDEESGGQHAAIWRAAAGTRRVLSFGTAGEADVQATVALV 266

Query: 266 CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              Q  M+V+  G + E VH G +G H  +N L            V    + L+ F   +
Sbjct: 267 DGVQV-MQVRAPGHAFE-VHLGLLGTHNVRNALAATACALAAGVQVPAIQQGLAAFKAVK 324

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +     G   +ID++YNANP SM+AAI VL+  +      R+ V+GDM E+G+ 
Sbjct: 325 G---RLQVKHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP----RLLVIGDMGEVGDQ 377

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMD---GLFLFIQ 438
             +FH ++        I  +W +G    H +    A  R    H+    D    L     
Sbjct: 378 GPAFHTEIGGYAQALGIEALWATGELATHAVQAFGAQGR----HFERAADLARALEEDAG 433

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            ++     V+VK S      R++  L+ + PA
Sbjct: 434 GTVAKAGAVLVKGSRFMRMERMVAALVADTPA 465


>gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
 gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
          Length = 478

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 187/424 (44%), Gaps = 38/424 (8%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP++T H+    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   NPMFTLHEAAALIPGATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVA 65

Query: 62  QKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            +      V+  +VA +       ++P+  V D    L  LA   R +    ++A+TGS 
Sbjct: 66  ARN-----VSAALVARVPDGWDVSAVPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSN 120

Query: 118 GKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GKTT KEM+     A     +  A +G++NN IG+PLTL R+       + ELGM+H GE
Sbjct: 121 GKTTVKEMIASIFAAAVGANERLATVGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGE 180

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              L  +  P +A++      H    + +E +A   A +   L   G      +D++  +
Sbjct: 181 TSLLAKIAEPTVALVNNAQREHQEFMATVEAVALEHASVIHALNPEGVAVFPANDAYASI 240

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--------EQSWMEVQLQGKSMEVVHH 286
            +    A G + +         DF L   ++ +        +   + ++    + EV   
Sbjct: 241 WRVA--ATGNRIV---------DFALNTAERTTAAAVTGRFDGKRLSIETPEGAFEVTLQ 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDES 345
            +G H A N L            +D   + L  F   +GR + +          T+ID++
Sbjct: 290 VLGDHNAHNALAATSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDT 349

Query: 346 YNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           YNANP SM+AAI VL S  SP     R+ V+GDM E+G+    FH ++        I  +
Sbjct: 350 YNANPDSMRAAIDVLASHASP-----RVLVMGDMGEVGDHGPEFHREIGAYAKERGIDAL 404

Query: 405 WLSG 408
           +  G
Sbjct: 405 YAMG 408


>gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
 gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
          Length = 468

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
            + S + +   G  ++V  + +G H A+N L            +  AIKA L  F P +G
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
           R +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+
Sbjct: 321 RLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375

Query: 384 LSQSFHIDL 392
              +FH ++
Sbjct: 376 EGPAFHREI 384


>gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11A3]
          Length = 457

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 222/483 (45%), Gaps = 53/483 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           L   +++L  I+  S G   + F+N   ISIDSR++   + F AI+G ++DGH F+ + +
Sbjct: 5   LSELNNVLGDIKNLSEG--KRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KG   VV+   M   + S + P + V+D L A  KLA+  R +    IIAITGSVGKTT
Sbjct: 63  DKGVQSVVIKKGMQRLLPS-NFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   L+ + +      ++NN IGV LT+    ++    + E+GM  LG+I  L+  
Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATEIEDKALVLEMGMRGLGQIENLSKY 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLK 236
             P IAVIT I  AH+      + I  AK EI + L   G + +  +D F      E+ K
Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKYLNPEGVVIIPANDPFLEKTLKEVWK 241

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCS------EQSWMEVQLQGKSMEVVHHGIGY 290
            +   + I  I +   S   +  LR +   S      E++  E+ L+           G+
Sbjct: 242 GRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFEISLE-----------GF 290

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N L    +   L  D  +  K    F    GR K  +        T+ DESYNA+P
Sbjct: 291 HNASNFLFAYAVAKELGIDFASFNKF--DFAILGGRNKILKSVKT----TIYDESYNASP 344

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S+KA I  L +  P     +  + G M E+GE S+ +H    E+ +L N S +    F 
Sbjct: 345 ESVKACIKNLLE-KPRN---KFFIFGSMQELGEQSEKYH---KEIFNLINNSDIEKCVF- 396

Query: 411 VLALKDALPRSIHVHYSETMDGLFLF---------IQSSLVDGDVVVVKSSNSCGFYRLI 461
              + D      + +Y +      +          I  S   GD V++K S      ++I
Sbjct: 397 ---ICDKKNEKSYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSVLIKGSRFWQLEKII 453

Query: 462 NLL 464
            L+
Sbjct: 454 ELI 456


>gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
 gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
          Length = 418

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 206/434 (47%), Gaps = 37/434 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+RSI     FFA+KG +++G+ F   A+ +GA L +++ D     G  +I V   D+VL
Sbjct: 19  DTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIID-DAAYFTGPKTILV---DNVL 74

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  LA   R + K  ++A+TGS GKTTTKE+++  LS   +T A  G+ NNHIGVPLT
Sbjct: 75  ETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHGNLNNHIGVPLT 134

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L  M    + GI E+G +H  EI FL  L  P    IT    AHL  F G+E +   K+E
Sbjct: 135 LLSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITNFGKAHLEGFGGMEGVVMGKSE 194

Query: 213 IFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++  L     T F+N  D+       K     I  +Y F +S    F+       S   +
Sbjct: 195 LYTFLHTHQKTAFINPKDAL-----QKEKTTDIAHVY-FPES--ITFK-------SAAPF 239

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++V  +   ++    G   +      + +G+   I   ++ TAI   S + P   R +  
Sbjct: 240 VKVAFEDLEIQSNLVGDYNYANIAAAIAIGLYFKIPKQEIKTAI---SEYVPSNNRSQII 296

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A NQ    L+ ++YNANP+SMKAA+S  + +       +  +LGDM E+G  +   H 
Sbjct: 297 HTANNQ----LLLDAYNANPSSMKAAVSNFANLKA---AFKTVILGDMFELGTTAAEEHQ 349

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           ++ +        + +  G          P+       +T + L   + +  +  + +++K
Sbjct: 350 EMVDFTDACCFENTYYVGALFSGTTTKNPQ------FKTFEALEKHLHAQPLRKNSILIK 403

Query: 451 SSNSCGFYRLINLL 464
            S      RL+N+L
Sbjct: 404 GSRGMRLERLLNVL 417


>gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
          Length = 480

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 222/484 (45%), Gaps = 36/484 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D L+ I G   G         ++ DSR I   + F A+ G H DGH F+    ++G  + 
Sbjct: 4   DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 63

Query: 69  VV--NTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT------- 109
           VV  N D +          +G L +    VDD   AL K+A A   +LRS+A        
Sbjct: 64  VVTKNRDEILAQDWATEEELGKLIL--LQVDDAQIALGKIAQAHLEQLRSRARNGSGKLK 121

Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + E+G
Sbjct: 122 LVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVLEMG 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   LN D
Sbjct: 182 ASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAILNAD 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +  ++   G    +S  K+        K    S  S+      GK+ +V    I
Sbjct: 242 DPRVEAMSGRT--AGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKA-QVEMQLI 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L          A + T   A ++ H       R           LID++YNA
Sbjct: 299 GAHHVSNALAA--AAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDLIDDAYNA 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I    L G
Sbjct: 357 NPDSVKAALDVLSKYA--ASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP--VLIG 412

Query: 409 FHVLALKDALPRSIHVHYSE---TMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +A    L  S   H  E   T+D       +Q  +   D++++K S+    ++L   
Sbjct: 413 VGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQS 472

Query: 464 LLEE 467
           + E 
Sbjct: 473 IEER 476


>gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
 gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 182/392 (46%), Gaps = 33/392 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+QKG    VV+    A        +  VD
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKADDGRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  LS     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK------ 262
           K E+++ L+   G +FLN  +S  +L++  +       I ++G+ + AD Q         
Sbjct: 194 KGELYDFLKAHDGLLFLN--ESNVDLMEMAAQR-EFSRIITYGQDETADVQGNVVSCAPF 250

Query: 263 ----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               W+  S Q          + EV  H IG +   NML  + I             AL 
Sbjct: 251 LKFIWQALSHQP------SSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALE 304

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLG 376
            + P   R +    A N+    LI ++YNANP+SM AAI    L Q+       ++A+LG
Sbjct: 305 NYIPHNNRSQLTETAHNR----LIVDAYNANPSSMAAAIENFRLMQVKD-----KMAILG 355

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           DM E+G  S   H  + ++L    I +VWL G
Sbjct: 356 DMRELGTASGEEHQKVIDLLKNTGIDNVWLVG 387


>gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei NCTC 13177]
 gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
 gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
          Length = 468

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
            + S + +   G  ++V  + +G H A+N L            +  AIKA L  F P +G
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
           R +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+
Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375

Query: 384 LSQSFHIDL 392
              +FH ++
Sbjct: 376 EGPAFHREI 384


>gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei K96243]
 gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
 gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia pseudomallei K96243]
 gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
          Length = 468

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
            + S + +   G  ++V  + +G H A+N L            +  AIKA L  F P +G
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
           R +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+
Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375

Query: 384 LSQSFHIDL 392
              +FH ++
Sbjct: 376 EGPAFHREI 384


>gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 503

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 26/375 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V   + A    LS+P 
Sbjct: 23  MIDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVGRLLPA----LSVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139
             V++   AL ++A A   R +AT ++A+TGS GKT+ K +L   L    +      YA 
Sbjct: 79  VVVENAELALARVA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +PH+A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257
              +  +A  K  I+  L   G   +N DD+F    + +  +  +  + I  +G   +AD
Sbjct: 198 LGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLHISAD 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ + Q     +  V  QG++ +V       H   N L   G+   L A +   + A
Sbjct: 258 ITARQLQLQAGAAQFTLVTPQGEA-QVALPLPARHNVLNALAATGLA--LGAGIALPVIA 314

Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L+  HP  GR  +    L  G   LID+SYNANP S+ AAI  L+     G+G    V
Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GDG--WLV 367

Query: 375 LGDMCEMGELSQSFH 389
           LGDM E+G    + H
Sbjct: 368 LGDMRELGAEGVALH 382


>gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 492

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 209/449 (46%), Gaps = 28/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  + IDSR + P   F A+ G   DGHDF   AV  GA  V+   +         +P  
Sbjct: 27  VTSVVIDSRQVGPGALFVALPGERVDGHDFAAGAVAAGAVAVLGARET-------GVPTV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL  LA   R  + AT++ +TGS GKTTTK++L   L  +  T A +GS+NN 
Sbjct: 80  -VADPAAALAALAAHLRDLAPATVVGVTGSAGKTTTKDLLADLLGRLGPTVAAVGSFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
           IG+PLTL R   D  F + E+G   +G I  L  + RPH+ ++  +  AH+  ++ G   
Sbjct: 139 IGLPLTLLRTEPDTAFVVLEMGARGIGHIATLCAVARPHVGLVLNVGSAHVGEYADGRNG 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA+AK E+ E    TG + LN DD     +  ++ A     + +FG++  AD +  + + 
Sbjct: 199 IAAAKGELAE--AATGLVVLNADDPLVAAMAGRAGA----QVVTFGRAAAADVRAERVEV 252

Query: 266 CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +       L G     +  G +G H   N L    + + L      A  AL    P+ 
Sbjct: 253 GGDGRAAFDLLAGGERHRLRLGLVGAHQVANALAAAAVATSLGLAPAEAAAALEEARPR- 311

Query: 325 GRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
               R+R  +        ++++SYNANP SM+AA++ L  +   G GR  AVLG M E+G
Sbjct: 312 ---SRWRMEVTTTPDGVVVLNDSYNANPESMRAALTALMDM--RGAGRAWAVLGPMGELG 366

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQ 438
             + + H  L  + +   +S +   G     +  A       +    +   +D     + 
Sbjct: 367 ADADAAHDTLGRLAAGLGVSRLVAVGAGARRVHQAAEHEGAWAGESTWVPGVDEAVALLA 426

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +  GDVV+VK+S S G  R+   L  +
Sbjct: 427 AQVRPGDVVLVKASRSFGLERVATGLTAD 455


>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 463

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 226/467 (48%), Gaps = 16/467 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + H ++   +G  I    +  VN IS D+R +  +  F  + G  +DGH FIL A+++GA
Sbjct: 5   SIHKIITVCKGKMILEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGA 64

Query: 66  GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +V       +G L+   V  V+D L AL ++    R  S    I +TGS GKTTTK+
Sbjct: 65  IGALVQKGQEFPLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +        G+ NN IG+PLTL  +    + G+ E+GM+ LGEI  L   V+P
Sbjct: 125 MIAGILETNFNVLKNEGNLNNQIGLPLTLFNLEPCHEIGVLEMGMNSLGEILSLAKTVQP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAVIT +  +H+ +    E I +AK EI   L +   + +N DD F + +K +S    I
Sbjct: 185 HIAVITNVGFSHIEHLGSQENILTAKMEITTRLREKDYLLINGDDPFLKTVKEESKTYRI 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   FG   + D          E  +  +V +Q K         G H   N L+ L  V
Sbjct: 245 IT---FGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALW-V 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +       AI+    F   E    R    +  G   +I+++YNA+P SMKAAI+VL+Q 
Sbjct: 301 GLHYQMTPLAIQ--KGFDRLELSKMRLEI-VTYGDVKVINDAYNASPDSMKAAITVLNQS 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSI 422
           +     R+IA+LGD+ EMG  ++  H  +   ++   + ++   G     + ++A+ +  
Sbjct: 358 TGI---RKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITVGKSAQWIAREAVEQGF 414

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              H++ + + D     +++ L   DVV+VK S       ++N + E
Sbjct: 415 SQAHIYQTPSNDLAIKVLKTLLSPRDVVLVKGSRGMKMEEIVNFIQE 461


>gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
 gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
          Length = 455

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 179/364 (49%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAALKGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SM+AAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 483

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 224/484 (46%), Gaps = 36/484 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D L+ I G   G         ++ DSR I   + F A+ G H DGH F+    ++G  + 
Sbjct: 7   DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 66

Query: 69  VV--NTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT------- 109
           VV  N D +          +G L +    VDD   AL K+A A   +LRS+A        
Sbjct: 67  VVTKNRDEILAQDWATEEELGKLIL--LQVDDAQIALGKIAQAHLEQLRSRARNGSGKLK 124

Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + E+G
Sbjct: 125 LVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVLEMG 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   LN D
Sbjct: 185 ASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAILNAD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +  ++   G    +S  K+        K    S  S+      GK+ +V    I
Sbjct: 245 DPRVEAMSGRT--AGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKA-QVEMQLI 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    I  +          AL    P +   + +   L  G   LID++YNA
Sbjct: 302 GAHHVSNALAAAAIAHVAGMATHEIAAALHHATP-QSEHRMHLVHLADG-VDLIDDAYNA 359

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I    L G
Sbjct: 360 NPDSVKAALDVLSKYA--ASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP--VLIG 415

Query: 409 FHVLALKDALPRSIHVHYSE---TMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +A    L  S   H  E   T+D       +Q  +   D++++K S+    ++L   
Sbjct: 416 VGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQS 475

Query: 464 LLEE 467
           + E 
Sbjct: 476 IEER 479


>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
          Length = 464

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 211/471 (44%), Gaps = 42/471 (8%)

Query: 5   WTFHDLLQAIQGH----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            +  ++ +A+ G     + G VP      +++DSR++AP + F A+ G   DGHDF+  A
Sbjct: 4   MSLAEVAEAVGGRLTPDAAGTVP----GKVTVDSRAVAPGDLFVAVPGERVDGHDFLTAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---SKATIIAITGSV 117
                         + +    ++P   VD+ + AL +LA A   R        I ITGS 
Sbjct: 60  AAA------GAVAALTTRPDGALPCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSS 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L++   T +  GSYNN IG+PLT+     D  F + E+G    G I  
Sbjct: 114 GKTSTKDLLGQVLATAGATVSPPGSYNNDIGLPLTVLDADEDTRFLVLEMGSRGRGHIAR 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP + V+  +  AHL  F   + IA AK E+ E L   GT  LN DD     +  
Sbjct: 174 LCRVARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEALPAEGTAVLNADDPRVIGMAP 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++ A     + + G+S  AD +        + ++   +   G+   V    +G H   N 
Sbjct: 234 RTRA----RVVTTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMK 354
           L   G         D    ALS   P+     R+R  + +     T+++++YNANP SM+
Sbjct: 290 LSAAGAALAAGMAPDAVAAALSAAEPR----SRWRMEVTRRDDGVTVVNDAYNANPESMR 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA++ L+ +      RR+AVLG M E+G  +   H  L        +  V   G   + +
Sbjct: 346 AALAALAGLPAR---RRVAVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGI 402

Query: 415 KDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNSCGF 457
            D    ++     E    + +         +   LV GDVV+VK+S S G 
Sbjct: 403 ADG---ALAAGAREGEGAVRVPDRAAARELLTEVLVPGDVVLVKASRSYGL 450


>gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
 gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
          Length = 457

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 18  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 74  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 134 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 194 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
            + S + +   G  ++V  + +G H A+N L            +  AIKA L  F P +G
Sbjct: 251 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 309

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
           R +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+
Sbjct: 310 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 364

Query: 384 LSQSFHIDL 392
              +FH ++
Sbjct: 365 EGPAFHREI 373


>gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
 gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
          Length = 483

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 222/484 (45%), Gaps = 36/484 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D L+ I G   G         ++ DSR I   + F A+ G H DGH F+    ++G  + 
Sbjct: 7   DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 66

Query: 69  VV--NTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT------- 109
           VV  N D +          +G L +    VDD   AL K+A A   +LRS+A        
Sbjct: 67  VVTKNRDEILAQDWATEEELGKLIL--LQVDDAQIALGKIAQAHLEQLRSRARNGSGKLK 124

Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + E+G
Sbjct: 125 LVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVLEMG 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   LN D
Sbjct: 185 ASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAILNAD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +  ++   G    +S  K+        K    S  S+      GK+ +V    I
Sbjct: 245 DPRVEAMSGRT--AGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKA-QVEMQLI 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L          A + T   A ++ H       R           LID++YNA
Sbjct: 302 GAHHVSNALAA--AAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDLIDDAYNA 359

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I    L G
Sbjct: 360 NPDSVKAALDVLSKYA--ASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP--VLIG 415

Query: 409 FHVLALKDALPRSIHVHYSE---TMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +A    L  S   H  E   T+D       +Q  +   D++++K S+    ++L   
Sbjct: 416 VGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQS 475

Query: 464 LLEE 467
           + E 
Sbjct: 476 IEER 479


>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
           [Chlamydophila psittaci 6BC]
          Length = 436

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 215/444 (48%), Gaps = 31/444 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 14  ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLELI 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 72  VVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNSQ 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT IA  H+ NF   G++
Sbjct: 132 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQ 191

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K+ I   L  +    L  D  ++     +S +   K  ++F   + ADF    +K
Sbjct: 192 GIAEEKSHI---LRNSRVQLLPKDSPWYSYFMKQSVS-AEKFSFAF-YDETADFY---YK 243

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              + S +    +G     V     Y  A  N+L++L +  +L   VD  I +       
Sbjct: 244 AIRKDSVVISTPEGDIDFAV--AFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLP 301

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R+  ++  G   +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G 
Sbjct: 302 P---MRFEQSVRNG-IQIINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGN 355

Query: 384 LSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            S+  H  +A + LS    ++ I   WL   H+L        +  V +  +  G+   ++
Sbjct: 356 HSEEGHTVVANKALSKASIIFFIGEKWLPIRHLLKHD-----TCEVSFYPSAQGIEEILK 410

Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462
             +  GD+V++K S S     L++
Sbjct: 411 KVVQQGDIVLLKGSRSLALESLLS 434


>gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
          Length = 432

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 205/431 (47%), Gaps = 32/431 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A+++G+   +V+    A  G+    +  VD
Sbjct: 16  VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAGNTHYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L KLA   R +    II ITG+ GKTTTKE++   LS         G+ NNHIGV
Sbjct: 74  NCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    D  + E+G SH G+IR L  +  P   +IT +  AHL  F   + +   
Sbjct: 134 PLTLLRLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNVGKAHLEGFGSFDGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L + G  TIF+++D+ + + +    + +   T   +Y  G+ + N+ +   KW
Sbjct: 194 KGELYDYLRRRGDSTIFIDHDNPYLKEIAWGLNMIPYGTEDELYVNGRITGNSPYLTFKW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K   E    EVQ Q          IG +   N+L  + I      +     KAL+ + P+
Sbjct: 254 KAGKEGERHEVQTQ---------LIGEYNFPNVLAAVTIGRFFGVEPAKIDKALAEYVPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N     LI ++YNANP SM AAIS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----ILIVDAYNANPTSMMAAISNFRNMQAE---NKMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLV 442
            S   H  + + L      +V L G    A +       H + +      L   +Q    
Sbjct: 358 DSAEEHQKIVDYLEKCGFGNVILVGEQFAATR-------HGYLTCPNASALIEALQKDRP 410

Query: 443 DGDVVVVKSSN 453
            G  +++K SN
Sbjct: 411 AGKTILIKGSN 421


>gi|254303960|ref|ZP_04971318.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324152|gb|EDK89402.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 608

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 196/404 (48%), Gaps = 38/404 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  + +DSR +     FFAI     +G+ ++   + KG  LV+  NTD+          +
Sbjct: 199 IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGVSLVIADNTDVKDE------RI 248

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V + +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YNN
Sbjct: 249 LKVSNTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSAKAKTLKTEGNYNN 308

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + 
Sbjct: 309 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDN 368

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E + K  T F+  DD +   L           +   G + N + ++  ++ 
Sbjct: 369 VFKAKTELLEFVNKENT-FVCGDDEYLAKL----------DVNRIGFNDNNNHKIESYEF 417

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHP 322
             + S  +  L GK  ++    +G H   N  + + +   V +   ++ + +K + + + 
Sbjct: 418 SDKGS--KFILDGKEYKI--SLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNM 473

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R++  +  G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+G
Sbjct: 474 ------RFQ-EIKIGEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELG 524

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
           E    +HID+   L    I  ++L G  +    D   +S    Y
Sbjct: 525 ENEVDYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKSKSEEY 568


>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
 gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci RD1]
 gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
          Length = 448

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 215/444 (48%), Gaps = 31/444 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 84  VVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT IA  H+ NF   G++
Sbjct: 144 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K+ I   L  +    L  D  ++     +S +   K  ++F   + ADF    +K
Sbjct: 204 GIAEEKSHI---LRNSRVQLLPKDSPWYSYFMKQSVS-AEKFSFAF-YDETADFY---YK 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              + S +    +G     V     Y  A  N+L++L +  +L   VD  I +       
Sbjct: 256 AIRKDSVVISTPEGDIDFAV--AFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLP 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R+  ++  G   +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G 
Sbjct: 314 P---MRFEQSVRNG-IQIINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGN 367

Query: 384 LSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            S+  H  +A + LS    ++ I   WL   H+L        +  V +  +  G+   ++
Sbjct: 368 HSEEGHTVVANKALSKASIIFFIGEKWLPIRHLLKHD-----TCEVSFYPSAQGIEEILK 422

Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462
             +  GD+V++K S S     L++
Sbjct: 423 KVVQQGDIVLLKGSRSLALESLLS 446


>gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 462

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 28/390 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F  ++G   DGH+FI  A   GA    V  D +     L   V 
Sbjct: 26  VTGLAFDSRKLKPGMLFVPLRG-ERDGHEFIPVAATAGAVATFVAADHLPVTTKLITLV- 83

Query: 87  GVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V D L A+ +LA    L +    ++AITGS GKTTTK+M    L++         +YNN
Sbjct: 84  -VPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNN 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   ++
Sbjct: 143 EIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDK 202

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGI---KTIYSFGKSKNADF 258
           IA AK EI +GL+  GT   N D+   +    K        G+    TI++   S +   
Sbjct: 203 IADAKMEITDGLKDDGTFIFNGDEPLLQERAKKITQERETFGLHPENTIFAHSISGH--- 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R   + + ++W ++      M       G +   N L  L +        +   KAL+
Sbjct: 260 --RNHTEFTVEAWPDLTFSIPIM-------GEYNVVNALAALLVGRKFHVKPEIMQKALA 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R +     + +    ++ + YNANP +MKA I   S+ +    GR IAVLGDM
Sbjct: 311 HFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFT--ATGRHIAVLGDM 365

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+GE S + H  LAE L    +  V+L G
Sbjct: 366 LELGEQSPALHASLAEALDPKEVQVVYLYG 395


>gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 507

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 191/392 (48%), Gaps = 37/392 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  D+R I   + F AI G ++DGH+F+  A++KGA  V+V+      I +L++P   VD
Sbjct: 49  IITDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVS----QPIEALAVPQLKVD 104

Query: 90  DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIK--------KTYACI 140
           D   A  ++A   R + +K  +IA+TGS GKTT KEML    + ++         T    
Sbjct: 105 DTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQSTTLVTR 164

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN  GVP+ L  +     + + ELG +H+GEI + T +V+P +A I  I  AHL  F
Sbjct: 165 GNLNNDFGVPMMLLELEQQHRYAVLELGANHVGEIAYTTAMVKPDVACILNIGTAHLGEF 224

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGI-------------K 245
            G + IA  KAEI++ L ++ T  + +DD + + L   AK H   +             K
Sbjct: 225 GGRDNIAKTKAEIYQSLTESSTAVVPFDDDYTQQLTAVAKQHTPHVIHYGWQHLQHNSDK 284

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S  +    + Q    + C +  + ++  Q   +++     G H   N L        
Sbjct: 285 ADSSQPQVYATEVQTTALQSCFKLHF-DLDSQTSVVDITLPMSGEHNVSNALAA--AACA 341

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             + +   + A  +      +G+  R  L  G   +ID++YNANP SM+AA  VL+  + 
Sbjct: 342 YASGIAPEVIAAGLNQATSSKGRLGRQTL--GMHHIIDDTYNANPNSMRAAADVLAAQA- 398

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              G ++ VLGD+ E+G+ S   H  L + ++
Sbjct: 399 ---GYKVLVLGDIGELGDASSEEHYKLGQAIA 427


>gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R]
 gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 514

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 207/478 (43%), Gaps = 46/478 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSRS+ P   F A+ G   DGHDF   A++KGA  V+   ++   + ++ +P   + 
Sbjct: 31  VEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREV--DVPAIVVPPVKIQ 88

Query: 90  D----------------VLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEML 126
           +                V+ AL++LA       VA     +  ++AITGS GKT+TK+ +
Sbjct: 89  ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGH---QLNVVAITGSAGKTSTKDFI 145

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L     T A  GS+NN +G+P T  R   D  + + E+    +G I+ LT +  P I
Sbjct: 146 ATVLGQDGPTVAPPGSFNNELGLPHTALRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRI 205

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTI-FLNYDDSFFELLKAKSHALG 243
           A +  +  AHL  F   E IA AK EI E L  +KTG +  LN DD F   +  ++ A  
Sbjct: 206 AAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARV 265

Query: 244 IKTIYSFGKSKNADFQLRKWK-----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      G++  +D+    W          ++   +  +  S  V     G H   N L 
Sbjct: 266 VWFSTDAGQANKSDY----WATSISLDAVARASFTLNTKDGSWPVALQVFGEHQVANALA 321

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I        +  +  L           R          T+I++SYNANP SM+A I+
Sbjct: 322 AAAIAMEAGVAPELVVAGLEAH--SAASAHRMDVKTRADGVTIINDSYNANPDSMRAGIA 379

Query: 359 VLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLAL 414
            L+   S   E    AVLG M E+G+ +   H +L   L+ YN+  +   G +       
Sbjct: 380 ALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELAKYNVQELVAVGENPNCAALA 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           + A    +  H    +D     +   +   DVV+VK+SN+   +R+   L    P ++
Sbjct: 440 ESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLVKASNADRLWRVAEALHGMVPGLK 497


>gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
          Length = 452

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 177/362 (48%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIRVGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  LA   R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKVWRENVNPFVFGITGSGGKTTVKEMLAAILRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKMATLNLNTRTFGIDSGDVHAENIML 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 613

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 193/382 (50%), Gaps = 30/382 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +I      + 
Sbjct: 203 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIAD-----NIDVKDERII 253

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA+  R +    ++ ITGS GKTTTK+++   LS   KT    G+YNNH
Sbjct: 254 KVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNH 313

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + +
Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNV 373

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E + K  T F+  DD +  L K   + +G     ++ K ++  F  +  K  
Sbjct: 374 FKAKTELLEFVIKENT-FVCGDDEY--LAKLDVNKIGFNNSNTY-KIESYKFSDKGSKFV 429

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +    E+ L GK   + +  I   +A+ + +T         +++  +K + + +     
Sbjct: 430 LDGKEYEMSLLGKH-NISNTAIAIELAKKIGLT-------DEEIENGLKEIKISNM---- 477

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R++  +  G    I+++YNA+P SMKAAI  L++I  + +  ++A+LGDM E+G+   
Sbjct: 478 --RFQ-EIKIGEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKVAILGDMLELGDNEI 532

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
            +HID+   L    I  ++L G
Sbjct: 533 DYHIDVLNYLLDKKIKLIYLYG 554


>gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
          Length = 430

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 212/439 (48%), Gaps = 28/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R   P   FFA++G  ++G+ F   A+  G  L VV+   V     L +    VD
Sbjct: 16  ITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCALAVVDDPSVVDDDRLIL----VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +    +I ITG+ GKTTTKE+++  LS         G++NNHIGV
Sbjct: 72  DVLTTLQALAAFHRHQFTGPVIQITGTNGKTTTKELVSAVLSERYNVLFTQGNFNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+       + E G +H GEI+ L+ +V P   +IT +  AHL+ F   E +   
Sbjct: 132 PKTLLRLNASHQIAVIETGANHPGEIKLLSEIVDPDCGLITNVGKAHLAGFGSFEGVIRT 191

Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L       +F+N D+ +   L+  +H L   T    GK  + + ++     C 
Sbjct: 192 KGELYDYLRTKSDAFVFINADNPY---LQPIAHDLLRITYGRPGKDYDVEGEVLTCDPCL 248

Query: 268 EQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               +  +++G +  EV    IG +   N+L  + +        +   +A++ + P   R
Sbjct: 249 N---LRFRIKGGAWQEVKTQLIGAYNIDNILAAVAVGVRFGVTPEQISRAIAAYCPTNNR 305

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELS 385
            +  R A N    TLI ++YNANP SM AA+     I  PH    ++A+LG M E+G  S
Sbjct: 306 SELLRTATN----TLIVDAYNANPTSMAAALDNFQLIKHPH----KMAILGGMRELGNAS 357

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  + + ++   +  +WL G      ++  P +    Y  +++ +   ++   +   
Sbjct: 358 AQEHQAIIDKVATMALDDIWLVG------EEFQPFAERYRYFPSVEAVEQQLREHPLHDS 411

Query: 446 VVVVKSSNSCGFYRLINLL 464
           ++++K SNS   YRL + L
Sbjct: 412 LILIKGSNSQHLYRLPDYL 430


>gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 463

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 211/445 (47%), Gaps = 40/445 (8%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  V G +  DSR I P   F A  G H DGHDF   AV  GA   +V+ ++ A     
Sbjct: 23  PETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAAAAVADGAVAALVSREVDA----- 77

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             P   VDDV  A  KLA A   R  +  II +TGS GKT+TK+++     ++  T A  
Sbjct: 78  --PSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSAGKTSTKDVMAELCRALGPTVAPE 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN IG+P T+ ++     + + E     +G I +L  +  P IAV+  +  AH+  F
Sbjct: 136 GTLNNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDYLCGIAPPGIAVVINVGTAHMGEF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             ++ IA AK E+ E +   G + LN DD+    ++ ++       + +FG++++AD + 
Sbjct: 196 GTVDGIARAKGELAEAVAPGGVVILNADDARVAAMRDRA----RARVVTFGEAESADIRA 251

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT------LG-----IVSILTAD 309
                 + Q    +     S  V     G H   N L        LG     I S+++  
Sbjct: 252 TDVVSEAGQPRFTLHTPNGSAPVALKLYGAHHVSNTLAAAAVAVELGMAAEAIASVVSGP 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  + + + VF   +G              T+ID+SYNANP+SM AAI+ L+ +    E 
Sbjct: 312 LSLSPRRMDVFTRADG-------------TTVIDDSYNANPSSMAAAINALADLGK--ES 356

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R+IAVLG M E+G+ +++ H+ + E+ +  +I  V        A+ +    +  + Y   
Sbjct: 357 RKIAVLGYMAELGDETEAAHLQVGELAARNDIDIVISVEEVAAAIAEGAGLAGSIAYGVD 416

Query: 430 MDGLFLFIQSSLVD-GDVVVVKSSN 453
                +     L+D GDVV+VK S 
Sbjct: 417 DQAEAIAKLDELLDVGDVVLVKGSR 441


>gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 432

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 212/442 (47%), Gaps = 32/442 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G     +  VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +  P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L K    T+F+++D+++   +    + +   T   +Y  G+ + N+ +   +W
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAEGLNLIPYGTEDDLYVNGRITGNSPYLTFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K   +         GKS +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 254 KAGKD---------GKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382
             R +  +   N    TLI ++YNANP SM AA+     +  PH    ++ +LGDM E+G
Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH----KMLILGDMRELG 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  +A+ L       VWL G    A + +     +V   E +  L    ++   
Sbjct: 357 AESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQTYPNVQ--EVIKEL----EADKP 410

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN      +++ L
Sbjct: 411 KGYTILIKGSNGIKLSSVVDYL 432


>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
 gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
          Length = 466

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 180/380 (47%), Gaps = 17/380 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSRS+ P + F A+KG  +D HDFI   V +GA  V+V+ ++ A + ++  P     D  
Sbjct: 35  DSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSREVDAGVPAIVAP-----DTR 89

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGV 149
            AL +L    R +     +A+TGS GKTT KEM+    ++    ++  A  G+ NN IG+
Sbjct: 90  IALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEEQRLATGGNLNNDIGL 149

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+ R+       + ELGM+H GE  +L  + +P +AVIT     H      +E +A  
Sbjct: 150 PLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVITNAQREHQEFMVSVEAVAHE 209

Query: 210 KAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            A     L   G      D +S         +A G +   SFG S+ AD           
Sbjct: 210 HAAAIAALPANGVAVYPLDAESGGAYAPVWRNAAGARRALSFGTSQRADVHATVTLVDGA 269

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q  M+V+  G + +V    +G H  +N L  +         V    + L+ F   +G   
Sbjct: 270 QV-MQVRAPGHAFDVRLALLGEHNVRNALAAIACALAAGVHVPAIQRGLAGFQAVKG--- 325

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R +     G   +ID++YNANP SM+AAI VL+  +      R+ VLGDM E+G+   +F
Sbjct: 326 RLQVKYTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP----RVLVLGDMGEVGDQGPAF 381

Query: 389 HIDLAEVLSLYNISHVWLSG 408
           H ++        I  +W +G
Sbjct: 382 HQEIGAYAKARGIGTLWATG 401


>gi|330721151|gb|EGG99273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-22C6-diaminopimelate--D-
           alanyl-D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 376

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 182/377 (48%), Gaps = 15/377 (3%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++   AL  L    R   K  ++A+TGS GKTT KEM    L  +  T A  G++NN +
Sbjct: 2   VENCRDALGLLGSINRESFKGPMLAMTGSAGKTTVKEMSAAILGQLGNTLATAGNFNNDL 61

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL R+  +  + + ELG S +GEI +   LV+P +A+IT  A AH+  F  +  + 
Sbjct: 62  GAPLTLLRLAKEHQYAVLELGASSIGEIAYTAGLVKPDVAIITNAAEAHIEGFGCLNNVV 121

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWK-Q 265
            AK EI + L  +G   +N DD      K K+ A   +  ++S  ++  ADF  R ++ Q
Sbjct: 122 QAKGEILDALPPSGVAVINGDD--LNAYKWKARAGDRRQLVFSLNENSGADFFARSYELQ 179

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +     E+     +++V  + +G H   N L      S L A +      L    P  G
Sbjct: 180 ANGGFAFELVSPEGAIKVTLNHLGKHNIANALAAAAATSELGATLLQIKTGLEAVGPVAG 239

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R       L+ G   +ID+SYNANP S++AAI VLSQ   H    +I VLGDM E+G+ +
Sbjct: 240 R--LTGITLSSG-ARIIDDSYNANPESLRAAIDVLSQCPGH----KILVLGDMAELGDTA 292

Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              H + A       I ++   G     A ++  P+    H  E  D L   +++ +   
Sbjct: 293 LHDHQEAARYARNQGIDNLMTVGSLSAHAAREFGPQG---HAFENHDSLIETLRNRINGH 349

Query: 445 DVVVVKSSNSCGFYRLI 461
             V+VK S S    R++
Sbjct: 350 TTVLVKGSRSAHMERIV 366


>gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
          Length = 455

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 176/362 (48%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ +  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D  A  G+L    
Sbjct: 24  VSRVVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G  +IA AK+EI++GL + G   +  +D    + +  S     +T        +A+  + 
Sbjct: 199 GTNDIAKAKSEIYQGLGEDGLALIPCEDEHAVVFQTTSQDHQQRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       +D   + L  F 
Sbjct: 259 KPLSCE----FDLVCGNERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLDDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SMKAAI VL+++S      RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMS----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|225629826|ref|ZP_03787749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591321|gb|EEH12438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 352

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 175/360 (48%), Gaps = 65/360 (18%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+GM+  GEI+ L+ +  P+IAVIT I PAH  NFS + ++A AK EI  G++  G
Sbjct: 1   YLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNG 60

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----------- 270
           T+ L+ D+ +++ L   SHA   + + SFGK KNA+  L    +  E S           
Sbjct: 61  TLVLSRDNKYYDYLS--SHA--NRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPV 116

Query: 271 ----------------------WMEVQLQGKSMEVVHHGI-------------------G 289
                                 W+     G +   V + +                   G
Sbjct: 117 LDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQG 176

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A ++L    +V  L  D+     AL  F   +GRG  ++   N+ +  LID+SYNA+
Sbjct: 177 EHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVKYNKKYIHLIDDSYNAS 236

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PASMK AI  LS  S     R+IA+LGDM E+G+ S  FH DL ++++  NI  V+  G 
Sbjct: 237 PASMKTAIKTLSTYSNQ---RKIALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGK 293

Query: 410 HVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +L L + LP +I   H++++ + L   + + + + D ++VK S        ++L++ EF
Sbjct: 294 FMLELHELLPDNIRGTHFNDS-NQLKSDLANIIQNNDAILVKGSRGMK----MDLIVREF 348


>gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
          Length = 448

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 173/382 (45%), Gaps = 17/382 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++ P + F A++G  +DGH+F+  A + GA   +    +  ++  L +P     
Sbjct: 28  VHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGAVAAIAEHGLSDALPGLQVP----- 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHI 147
           D L AL +LA   R R    ++A+TGS GKTT  +M+   L +      +A  G+ NNHI
Sbjct: 83  DALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQMVAAILRAAHGDAAFATRGNLNNHI 142

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +      G+ ELGM+H GEI  L  + RP IA++      H    + +E +A
Sbjct: 143 GVPLTLLGLEPAHAAGVVELGMNHPGEIAELAAIARPTIALVNNAQREHQEFMATVEAVA 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               +    L   G      DD +  L +  +   G +   +F     AD   R   Q  
Sbjct: 203 RENGQAIAMLPPDGVAVFPADDDYTPLWRELA---GARRTITFALDGAADLTARATWQGD 259

Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              W +E+      +       G H  +N L                   L+ F P  GR
Sbjct: 260 R--WRVEMATPAGPLVTTLAVAGRHNVKNALAAAACALAAGVAPAAIAAGLTAFQPVAGR 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R A   G  TL+D+SYNANP S  AA++VL+ +     G R  VLGDM E+GE   
Sbjct: 318 SQAARLATAHGEITLVDDSYNANPDSALAAVAVLAALP----GPRWLVLGDMGEVGERGP 373

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
            FH ++        I  VW +G
Sbjct: 374 EFHAEVGAAARAAGIETVWTAG 395


>gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 458

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84
           +GI  D+R + P   F +++G H+DG+ F + A+++G    +V  D ++ I  +      
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALV--DDLSYIDEVDESDAD 75

Query: 85  -----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                ++  D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A 
Sbjct: 76  LRERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHAT 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+YNN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS 
Sbjct: 136 QGNYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSG 195

Query: 200 FSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---- 254
           F   E +  AK+E++  L E +G  F N +D         S+  G+ T+Y  G +     
Sbjct: 196 FGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTL-----ISNLNGLPTVYYNGTTSPRVT 250

Query: 255 -----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  +  L K + C +++       G+S ++    +G +   N+L  + +      D
Sbjct: 251 GAVLPTDESGLLKIEWCDQET-------GESYQLATKLVGDYNLNNILAAITVGLHFGLD 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  +A++ + P+  R +       QG   ++D  YNANP+SM+ A+S    +   G  
Sbjct: 304 PKTINEAVTNYQPRNERSQVLP-PTAQGNRVILD-CYNANPSSMEVALSSYFTMDCQGLN 361

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVH 425
           R + +LGDM E+G+ ++S HI +   +  Y + +     +  G +  AL+ A   S H  
Sbjct: 362 RML-ILGDMNELGDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFALQ-ARYGSEHFI 419

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +   L  +          +++K SNS
Sbjct: 420 FFPSATALKQYFTRHQPQHSFILIKGSNS 448


>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 465

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 227/477 (47%), Gaps = 42/477 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +  A+ G  +G  P   V G  + DSR  +    + A +G + DGH F+  A+++GA  V
Sbjct: 8   IADAVSGRLVG--PDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAV 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKE 124
           +   ++  ++  +      V+D   AL  LA A    LRS+ T  +IA+TGSVGKTTTK+
Sbjct: 66  IAERELEEAVAQII-----VEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS    T A   S+NN +G+PLT  +        + E+G S  G I +LT +V P
Sbjct: 121 LLLQILSEDGPTVAPKLSFNNEVGLPLTALQADETTRHLVLEMGASGPGHISYLTDIVSP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+   +  AH+  F G E +A+AKAE+  G    G + LN DD   E +     A G 
Sbjct: 181 DVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAM--APMATGP 238

Query: 245 KTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +S      AD +  + +  +    S+  V  +G S  V    +G H   N L     
Sbjct: 239 IVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRG-SAPVSLALVGRHHVSNALAAAAG 297

Query: 303 VSILTADVDTAIKALS---VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              L  D+DT    LS      P   R   +   +     TLID+SYNAN  SM+A I+ 
Sbjct: 298 ALTLGMDLDTVAAVLSGARALSPH--RMDVHDLDIEGTALTLIDDSYNANLDSMRAGIAA 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---------SHVWLSGFH 410
           L+ I    +  RIAVLG+M E+GE S+S H  +  +++   +         SH +L G  
Sbjct: 356 LASIGR--DAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYLEGAS 413

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +A      R++    S+    +  F +    +G VV+VK S     +++ ++L E+
Sbjct: 414 GVA-----NRTVASDPSDAARLVARFAE----EGAVVLVKGSYGSQSWQVADILREK 461


>gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
 gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
          Length = 468

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHTLGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
            + S + +   G  ++V  + +G H A+N L            +  AIKA L  F P +G
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
           R +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+
Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375

Query: 384 LSQSFHIDL 392
              +FH ++
Sbjct: 376 EGPAFHREI 384


>gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
 gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 205/418 (49%), Gaps = 16/418 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +F ++++A+ G ++ G  P G V G+  DSR++ P   F  I G  +DGHDF + A++ G
Sbjct: 4   SFEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
           A  ++V+ +   ++    +P+  V+D + AL KLA   R R  +  +I +TG+ GKTT K
Sbjct: 64  AAALLVSRNPFDAV--PPVPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTVK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   LS    T     + NN IG+PL++     +  F + E G+SH  ++  L  ++ 
Sbjct: 122 ELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGEEAFWVMEAGISHPNDMDELGAILE 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I  + P H +   G    A  K+++   L   GT  ++ D   +  L  ++ A+ 
Sbjct: 182 PDLALILNVGPGHAAGL-GDRGTAHYKSKLLAHLAPGGTAIISAD---YPDLAREARAVR 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + ++     +  D++        E   +  + L G S++V     G   A+N++    +
Sbjct: 238 QELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDGVSIDVEAPFRGAFGAENVIAVAAV 297

Query: 303 VSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              L    +      +    PK+    R+ C+   G + +ID+SYNANP S    +   +
Sbjct: 298 AHRLGLGAEEIAAGFAGAALPKQ----RFACS-RAGDWLVIDDSYNANPLSFSRMLEAAA 352

Query: 362 QIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +++  H +   + VLG+M E+G LS+  H +L  +++      V   G H+   +D L
Sbjct: 353 EMAGDHADRPLVCVLGEMGELGSLSEDEHRNLGRLVADIKPRLVCWKGGHLEEFEDGL 410


>gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W]
 gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II]
          Length = 462

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 28/390 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F  ++G   DGH+FI  A   GA    V  D +     L   V 
Sbjct: 26  VTGLAFDSRKLKPGMLFVPLRG-ERDGHEFIPAAATAGAVATFVAADHLPVTTKLITLV- 83

Query: 87  GVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V D L A+ +LA    L +    ++AITGS GKTTTK+M    L++         +YNN
Sbjct: 84  -VPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNN 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+  F   ++
Sbjct: 143 EIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDK 202

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGI---KTIYSFGKSKNADF 258
           IA AK EI +GL+  GT   N D+   +    K        G+    TI++   S +   
Sbjct: 203 IADAKMEITDGLKDDGTFIFNGDEPLLQERAKKITQERETFGLHPENTIFAHSISGH--- 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R   + + ++W ++      M       G +   N L  L +        +   KAL+
Sbjct: 260 --RNHTEFTVEAWPDLTFSIPIM-------GEYNVVNALAALLVGRKFHVKPEIMQKALA 310

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R +     + +    ++ + YNANP +MKA I   S+ +    GR IAVLGDM
Sbjct: 311 HFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFT--ATGRHIAVLGDM 365

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+GE S + H  LAE L    +  V+L G
Sbjct: 366 LELGEQSPALHAGLAEALDPKEVQVVYLYG 395


>gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 424

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 23/376 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  D+RSI P   FFA+KG  ++G+ F L A++ GA   VV+ +    +G     +  V 
Sbjct: 13  ICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDEN----VGD-DERLIKVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A+   A+  R       I +TGS GKTTTKE+    L +  K +A  G++NNHIGV
Sbjct: 68  DVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGNFNNHIGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+   P + +  I E+G +H  EI  L  +  P +  IT    AHL  F G+E I   
Sbjct: 128 PLTILSAPKETEMLIVEMGANHQKEIGQLASIAEPTLGYITNYGKAHLEGFGGVEGIIKG 187

Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K+E+++ + +   G   +N DD+    ++ +  A   +T  +FGK+ NA F     ++  
Sbjct: 188 KSELYDYIAQNEEGVALVNADDA----IQLEKSAACRRT--TFGKT-NAQFTYTV-EEKD 239

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E + ++  +   S  +  +  G     N+   + +           ++AL+ + P   R 
Sbjct: 240 EFAGIQFSIATASYTIQSNLSGSFNCTNLAAAVALGRYCDVPAPAIVQALTDYLPAMNRV 299

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   NQ    L+D +YNANP SM  +I   ++    G      VLGDM E+GE S +
Sbjct: 300 EWRKTPSNQ---VLLD-AYNANPTSMSLSIENFAKWHKDG----WLVLGDMFELGEESAA 351

Query: 388 FHIDLAEVLSLYNISH 403
            H  + +++   N+  
Sbjct: 352 EHRAIVKLVQRINMEE 367


>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
          Length = 535

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 187/394 (47%), Gaps = 57/394 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR       F AI G H DGH ++      GA   +V+ ++  S    S+    VD
Sbjct: 45  VVIDSRQAHEGSLFVAINGEHADGHAYVATLGDSGALAAIVDHEIPQS----SVVQLVVD 100

Query: 90  DVLGALNKLA---VAARLRSKA--------TIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           D + AL +LA   +A R    A        +I+ ITGSVGKTTTK++L   L  + +T A
Sbjct: 101 DTVKALGELARHNLAQRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGELGETVA 160

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +GS+NN +G+PLT  ++     F I E+G +HLGEI  LTH+  P +AV+  +  AHL 
Sbjct: 161 PVGSFNNELGLPLTALQVGPSSRFLIAEMGANHLGEIANLTHIAPPDVAVVLKVGNAHLG 220

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSK 254
            F  +E IA AK+EI  G    G   LN DD     + A +  L    G++         
Sbjct: 221 EFGSVERIAQAKSEIVRGEVPGGMTILNADDPHVAAMDAIAPGLVRWFGLEHATEHDDYV 280

Query: 255 NAD-----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
            AD           F LR+    S+ ++ +V+L          GI G H   N L    +
Sbjct: 281 TADHVRMDDDGHAVFTLRQ----SDGAYQQVRL----------GIPGAHNVMNALAATAV 326

Query: 303 VSILTADVDTAIKALSVFHPKEGRG-KRYRCALN------QGFFTLIDESYNANPASMKA 355
                  +   ++ L     ++ R    +R A++      +  FTLID+S+NANP SM+A
Sbjct: 327 AQYFGLPLRHIVQVL-----EQVRAISPHRMAISIVRRPERPEFTLIDDSFNANPDSMRA 381

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            I  ++  +      RIAVLG M E+G    + H
Sbjct: 382 GIDGIAAFNAAEPMLRIAVLGAMLELGPDETALH 415


>gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 468

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325
            + S + +   G  ++V  + +G H A+N L            +  AIKA L  F P +G
Sbjct: 262 LDGSLLVIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320

Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
           R +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+
Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375

Query: 384 LSQSFHIDL 392
              +FH ++
Sbjct: 376 EGPAFHREI 384


>gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 467

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 220/478 (46%), Gaps = 41/478 (8%)

Query: 9   DLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           +LL+ ++GH     P+G  F      DSR+I     F A++G   DGHD +  A  +G  
Sbjct: 9   ELLEGVEGHWFSSPPKGELFWINAGTDSRTILSGNVFVALRGLRTDGHDHLEQAAARGTT 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNK---LAVAARLRSKATIIAITGSVGKTTTK 123
           L VV       I  ++IP   V+D L AL K   L +AA  R+   +I++TGSVGKTTT+
Sbjct: 69  LAVVER----GIPGVNIPQIVVEDTLVALRKMGALVLAAHRRAGHRLISLTGSVGKTTTR 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L     ++   G+ NN IGVPLTL   P    + + E+G+ + G++  L  L+ 
Sbjct: 125 ELIRTGLPP-GASHGSSGNENNEIGVPLTLLSWPPSARWCVLEVGIRNPGDMDILAPLLS 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               ++T +AP HL     +E +   K+++  G+ + G   +  +    E         G
Sbjct: 184 ADTGLVTAVAPVHLETLGTLEGVWKEKSKLLRGVVEGGCRIVPEEIRRTE---------G 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++S    +     L ++ +      + +  +GK++  +               LG  
Sbjct: 235 RDPLFSDPTRRLLGVSLDRFPEADVSGEL-LSPEGKAVLSLRRPPLRLPLPWPSRALGWC 293

Query: 304 SILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +++          D+ +A + +S++    GR +R   + + G   L+D  YNANPASM  
Sbjct: 294 ALMALAALAAEGVDLASAAERISLYRGYSGRMERR--SHSSGLLLLLDH-YNANPASMSE 350

Query: 356 AISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A   LS+     +G R  AVLGDM E+GE SQ FH ++ E  ++  ++ VW  G    + 
Sbjct: 351 AFEWLSRERGIRQGARAYAVLGDMLELGEGSQGFHREIGERAAMAGVAGVWYRGEQKSSF 410

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDG------DVVVVKSSNSCGFYRLINLLLE 466
            +   R     +      +F   +S L  G      D+++VK S       ++  LLE
Sbjct: 411 VEGFLRGGGKEFQIRDASVF---ESDLKSGRGPGPEDILLVKGSRGMKLEEVVATLLE 465


>gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
 gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
          Length = 433

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 196/400 (49%), Gaps = 31/400 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A++ G+   VV+    A  G     +  VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTGDAHYII--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    II ITG+ GKTTTKE+++  LS         G+ NN IGV
Sbjct: 74  NCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLNNSIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHALGIKT------IYSFGK-SKNADFQ 259
           K E+++ L +     TIF++YD+ +   L+  ++ L   T      +Y  G+ + N+ + 
Sbjct: 194 KGELYDYLRRRKEGSTIFIHYDNPY---LREIAYGLNQITYGSEEELYVSGRVTGNSPYL 250

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +WK   E         GK+ +V    IG +   N L  + I      +     KAL+ 
Sbjct: 251 TFEWKAGKE---------GKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKIDKALAE 301

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           + P+  R +  R A N    TLI ++YNANP SM A+IS   ++       ++ +LGDM 
Sbjct: 302 YTPQNNRSQLKRTADN----TLIIDAYNANPTSMMASISNFCKMEA---AHKMLILGDMR 354

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           E+G+ S   H  + + L   +  HV L G    A + + P
Sbjct: 355 ELGKDSAEEHQKIIDYLEECHFEHVMLVGELFAATRHSYP 394


>gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis N1568]
          Length = 452

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 178/363 (49%), Gaps = 21/363 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIP 84
            V+ I  DSR     + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L   
Sbjct: 23  LVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK-- 80

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIG 141
              VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G
Sbjct: 81  ---VDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NF 200
           ++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+   F
Sbjct: 138 NFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGF 197

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  +
Sbjct: 198 DGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIV 257

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K   C      ++    +   VV    G H   N      +       ++   + L  F
Sbjct: 258 LKPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGF 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E
Sbjct: 314 SNIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGE 366

Query: 381 MGE 383
           +GE
Sbjct: 367 LGE 369


>gi|33593958|ref|NP_881602.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella pertussis Tohama I]
 gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella pertussis Tohama I]
 gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
          Length = 945

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 176/375 (46%), Gaps = 17/375 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I   E F A+ G ++DGHD++  A   GA   VV       +  +++P   + 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLG 565

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146
           D L AL ++  A R      ++A+TGS GKTTTKEM++  L+  +      A  G++NN 
Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       +FELGM+H GEI  L  +  P +A++T     H      +E +
Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +   L + G      D+ +  +    +   G + +  FG     D    +    
Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLA---GARRVLRFGLQPGLDVYAERVVTQ 742

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   V     S  +     G H  +N L  +       A + T I AL+ F    GR
Sbjct: 743 AHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +  ++ G   LID++YNANP S +AAI VL+++       R  VLGDM E+G+   
Sbjct: 803 MQHRQ--MSDGTV-LIDDTYNANPDSARAAIDVLARLP----APRALVLGDMGEVGDNGP 855

Query: 387 SFHIDLAEVLSLYNI 401
           + H ++ +    + I
Sbjct: 856 AMHREVGDYAREHGI 870



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 32/372 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFG 87
           + +DSR I P + F A  G   DG  F+  A+ +GA  ++  T+   VA  G+ ++PV  
Sbjct: 32  LRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQ 91

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------ 141
           +  +LGAL       R     +++AITG+ GKT+  + L   L+ + K    IG      
Sbjct: 92  LRTLLGALAD-EWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALL 150

Query: 142 ----SYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITT 191
               S    +  P  LT+ R              L  S +G E   L H +R  +A  T 
Sbjct: 151 PDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDH-IRIAVAGFTN 209

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     ++    AKA +F+  +    + +N DD   E L A   A  +KT YS  
Sbjct: 210 LTRDHLDYHGTMQRYEQAKAALFQWPDLQAAV-VNADDPAGERLLASLPA-ALKTGYSL- 266

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   AD   R  +  +      + L    +++V   +G H   N+L+  G +S L   + 
Sbjct: 267 QGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGWPLP 326

Query: 312 TAIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              + L+   P +GR +       ++  A  QG   ++D  Y   P ++  A++ L  ++
Sbjct: 327 QIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVD--YAHTPDALARALTALRPVA 384

Query: 365 PHGEGRRIAVLG 376
               GR + V G
Sbjct: 385 QARGGRLVCVFG 396


>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 459

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 207/461 (44%), Gaps = 45/461 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           PQ  V G++ DSR ++P + F A++G    DGHDF   AV+ GA  V+           L
Sbjct: 22  PQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAAR-------PL 74

Query: 82  SIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +P   VDD L AL   A A     S+  ++A+TGS GKT+TK+++   L     T    
Sbjct: 75  DVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGATVFTQ 134

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           GS+NN IG+P+T      D    + E+G    G I +LT +  P I  +  +  AH   F
Sbjct: 135 GSFNNEIGLPITALEATADTRHLVVEMGARGQGHIAYLTQITPPRIGAVLNVGTAHAGEF 194

Query: 201 SGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            G E  A AK E+ E L    + G   LN DD+    + A++ A     + +FG  ++AD
Sbjct: 195 GGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAAMSARTKA----RVVTFGVERSAD 250

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH----------HGIGYHMAQNMLMTLGIVSILT 307
                       + + +  QG++   +H            +G H   N L    +     
Sbjct: 251 VY---------ATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNALAAAAVAEAAG 301

Query: 308 ADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            D     KAL+      EG   R R        T+++++YNAN  S  AA+  L+ +   
Sbjct: 302 MDAAQIGKALTAAESLSEG---RMRVTERPDGVTVVNDAYNANADSTAAALRALAHLGRE 358

Query: 367 GEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             GR IA+LG+M E+G  S   H     LA VL +  +  V      VLA +        
Sbjct: 359 RAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLVAVGEGDARVLATE--YGPDGR 416

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           V  ++   G +L  + +   GDVV+VK SN+ G   L + L
Sbjct: 417 VEATKAAAGEWLS-RYNFRAGDVVLVKGSNALGLGELADAL 456


>gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 426

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 172/367 (46%), Gaps = 26/367 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R       F A+ G ++D HD+I  A Q GA  ++ N     S+ S  +P+  V
Sbjct: 25  GVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGAVAIIAN----KSVDS-QLPILVV 79

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   AL+ +A       K  +IAITGS GKTTTK ML   LS    T    G+ NNH+G
Sbjct: 80  NDTQTALSTIASWHLQNIKPIVIAITGSNGKTTTKNMLANILSLQAPTLKTQGNLNNHLG 139

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP+TL  +     + + E+G +HLGEI  L  +V P IA++T    AH+  F G + +  
Sbjct: 140 VPMTLLTLEKQHQYAVIEMGANHLGEISHLRKIVNPDIAIVTNTLDAHIGTFGGFDNLVK 199

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI+    K              ++  +S   G  +    G +K +      +     
Sbjct: 200 AKGEIYSKNSK-------------NIINTQSIFTGDVSFTPHGNTKVSGNNGDIFASNIV 246

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +  ++ +  + + +  + IG H   N L     V  L  D++   + L     + GR +
Sbjct: 247 NNKFDLNIHQQKISITLNLIGIHNIDNALAASACVYPLGIDINLIKQGLEATKAEPGRLE 306

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                ++   F +ID++YNANP S   A+  L   S    G +I VLG M E+G  S+ F
Sbjct: 307 ----IIHTKQFRIIDDTYNANPYSTIIALKTLQNFS----GEKIIVLGTMEELGNYSKMF 358

Query: 389 HIDLAEV 395
           H  + ++
Sbjct: 359 HFKIGQL 365


>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 478

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 220/459 (47%), Gaps = 37/459 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------ 80
           ++G++IDSR++ P   F A++G   DGH ++  A + GA  V+V+ +  A +        
Sbjct: 32  IDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAGASAVLVDHEKSACVEGGWAAFA 91

Query: 81  --LSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTY 137
               + V  V+D L AL +L+     R    + IA+TGS GKTTTKE+L   LS    T 
Sbjct: 92  THSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAVTGSSGKTTTKELLGSVLSMKAPTV 151

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+ N+ IG+PL L  +     FG+FELG++ +GE+  L+ L  P   +IT I  AH 
Sbjct: 152 VNPGNLNSEIGLPLALFGVGPADHFGVFELGINRIGEMELLSSLYHPQHLLITNIGTAHS 211

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
               G E +   K ++   ++  G +F   DD   + LK++  +L  +    +G +    
Sbjct: 212 GPLGGKEGVFREKTKVLAHMQGEGFVFYPEDDDRIDALKSRYPSLAFRP---YGPATLTG 268

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L   +    + W+   L+ + + + +  +G H  QN    + +   L    +    AL
Sbjct: 269 --LETVEDLGTEGWL---LRYRGVSIHYPLLGQHNLQNGCGVIALAFELGVSPELIGAAL 323

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S   P  G     RC L +G  +++D+ YNAN  S +     ++ +    +GR++ V G 
Sbjct: 324 SAAAPVAG-----RCRLLRGAISVLDDCYNANLDSSERVFEYIASLP--WDGRKVIVFGS 376

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHV---HYSE 428
           M E+G  S   H    + ++   +  V+L G      F  ++ + ++ + +H     + E
Sbjct: 377 MKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSESFREISDQGSMSQILHFSENQFDE 436

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + L  F++    +GD+V++K S + G  RLI LL  E
Sbjct: 437 LSERLLAFVR----EGDLVLLKGSRTMGLERLIPLLQHE 471


>gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
 gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
          Length = 458

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 180/383 (46%), Gaps = 17/383 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSRS+ P + F A++G  +D HDFI   V +GA  V+V+ ++ A++ ++  P     
Sbjct: 24  VHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSREVDAAVPAIVAP----- 78

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL +L    R +     +A+TGS GKTT KEM+    ++     +  A  G+ NN 
Sbjct: 79  DTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRLATGGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ R+       + ELGM+H GE  +L  + +P +AVIT     H      +E +
Sbjct: 139 IGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVITNAQREHQEFMVSVEAV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           A   A     L   G      D +S          A G + + SFG ++ AD      + 
Sbjct: 199 AHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAAGTRRVLSFGTTQQADVHA-TVEL 257

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 M+V+  G + EV    +G H  +N L  +         V      L+ F P +G
Sbjct: 258 VDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACALAAGVHVPAIQAGLAEFKPVKG 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R +         +ID++YNANP SM+AAI VL+  +      R+ VLGDM E+G+  
Sbjct: 318 ---RLQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFA----APRVLVLGDMGEVGDQG 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
            +FH ++        I  +W +G
Sbjct: 371 PAFHDEIGAYAQARGIEVLWATG 393


>gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
 gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
          Length = 446

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 221/457 (48%), Gaps = 48/457 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G++F   A++KG    V++      I      +  V+
Sbjct: 16  VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQKEY-QIQEDERYIL-VE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R      II ITG+ GKTTTKE+L   L+     +   G++NN IGV
Sbjct: 74  DCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L  +  P  A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLCLKPEHEMAVVEMGASHPGDIQSLVTVAEPDYALITNVGRAHLQGFGSFEGVMRT 193

Query: 210 KAEIFEGLEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----- 261
           KAE+++ +++    G +F+N D+ + + +  ++H   +K +  + ++   D  +R     
Sbjct: 194 KAELYDYMQQHKPQGLVFINQDNEYLKEM-FRTHCPNVKAM-GYAQTDRPDISIRGEVVS 251

Query: 262 -------KWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +W++ +       +  W EVQ Q          IG +   NML  + I S   
Sbjct: 252 CAPYLKFRWRKTAAAPSPREDTRWHEVQTQ---------LIGAYNLDNMLAAITIGSHFG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    AL+ + P   R +    A N+    LI ++YNANP SM+AA++   ++    
Sbjct: 303 VSDEQINHALAGYVPSNNRSQLQITAHNK----LIVDAYNANPTSMEAALTNFQRMDV-- 356

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             +++A+LGDM E+G++S + H  + ++++  N+  VWL G         L +     + 
Sbjct: 357 -PKKMAILGDMRELGDVSMAEHQKIVDLIATLNLDKVWLVGEEFGRTNTTLRK-----FK 410

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +T + +   ++     G  +++K SN    ++L  LL
Sbjct: 411 DT-EAVREALRQEPPQGYYILIKGSNGIKLFQLPELL 446


>gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
 gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
          Length = 455

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 177/364 (48%), Gaps = 25/364 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++ G+L    
Sbjct: 24  VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAALDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRGNVNPFVFGITGSGGKTTVKEMLAAVLRHRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G  +IA AK+EI++GL + G   +  +D    + +  S     +T        +A+  + 
Sbjct: 199 GTNDIAKAKSEIYQGLGEDGLALIPCEDEHAAMFQTTSQGHQQRTFGVDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       +D   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLILDDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM 
Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365

Query: 380 EMGE 383
           E+GE
Sbjct: 366 ELGE 369


>gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
 gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
          Length = 468

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 17/368 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S + +   G  ++V  + +G H A+N L            +      L  F P +GR
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIKVGLEAFAPVKGR 321

Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+ 
Sbjct: 322 LQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376

Query: 385 SQSFHIDL 392
             +FH ++
Sbjct: 377 GPAFHREI 384


>gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 495

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 186/368 (50%), Gaps = 28/368 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIP 84
            ++ +  D+R+++    + A++G   DGHDF   A+ +GA GL+V        + +L +P
Sbjct: 23  MIDAVGNDTRALSNGSLYVALRGERVDGHDFAADALAQGASGLLVERL-----LPTLGVP 77

Query: 85  VFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YA 138
              V +   AL ++A A   R +AT +IA+TGS GKT+ K +L   L+   +      YA
Sbjct: 78  QVVVQNTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILTEAGRVDGTTVYA 136

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN IG+PL +   P D D  I+E+G    G+I +LT + RP +A++  IAPAHL 
Sbjct: 137 TPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIARPQVALVNNIAPAHLE 196

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNA 256
               +  +A  K  I+  L   G   +N DD+F    + + HA  +  + +  +G   +A
Sbjct: 197 RLGSLLGVAQTKGAIYAALPSDGVAVINADDAFGAWFEQQLHAQPVPGRRVLRYGLQASA 256

Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D + R+ + Q     +  V  QG++ +V     G H   N L   G+   L A +   I 
Sbjct: 257 DIRARQLRLQADGAQFTLVTPQGEA-QVTLPLPGRHNVLNALAATGLA--LGAGIALPII 313

Query: 316 A--LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           A  L+   P  GR   +R     G   L+D+SYNANP S+ AAI  L+     G+G    
Sbjct: 314 AAGLAQARPVAGRQIAHRL---PGGAVLVDDSYNANPGSLDAAIDALAAAP--GDG--WL 366

Query: 374 VLGDMCEM 381
           VLGDM E+
Sbjct: 367 VLGDMREL 374


>gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 427

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 179/380 (47%), Gaps = 45/380 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+  +  + +DSR I     FFAI+    +G+ ++  A+ KGA LV+ +          
Sbjct: 15  LPKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIAD-----RYSGN 65

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              V  V++ +  + +LA   R   K  +IAITGS GKTTTK+++   LS   +T   +G
Sbjct: 66  HEKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLG 125

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +HL    
Sbjct: 126 NYNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLK 185

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +  AK E+   L + G    + DD F + + A             G  +  D+++ 
Sbjct: 186 TRENVFKAKTELLPYLPE-GCFITSGDDVFLKKIPA----------IHVGYDERNDYRIF 234

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL---- 317
            +K+   +S    QL  K  E+     G H   N  M + I   +  D  T  + L    
Sbjct: 235 GYKKKDRRSSF--QLNDKQYEIPLE--GKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIE 290

Query: 318 ---SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                F   E +G +Y           I+++YNA+P SM  A+  L + +      +IAV
Sbjct: 291 LSPMRFERSEYQGTKY-----------INDAYNASPISMGVALDSLVETTAEC---KIAV 336

Query: 375 LGDMCEMGELSQSFHIDLAE 394
           LGDM E+GE   +FH D+ E
Sbjct: 337 LGDMLELGEKEVTFHKDVIE 356


>gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11H7]
          Length = 457

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 211/481 (43%), Gaps = 49/481 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    D+L  I+    G +       ISIDSR+    + F AIKG ++DGH F+   + K
Sbjct: 5   LLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   VV+   M   +   + P + V+D L A  KL +  R +    ++AITGSVGKTTTK
Sbjct: 65  GVKSVVIKKGMQKLLPD-NFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L  + K      ++NN IGV LT+     +    + E+GM  LG+I  L+    
Sbjct: 124 EMVGEVLKKLGKIKLSHSNFNNEIGVGLTILAADKEDKVLVLEMGMRGLGQIENLSKHSE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKA----- 237
           P IAVIT I  AH+      + I  AK EI + L   G + +  +D    E L+      
Sbjct: 184 PDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243

Query: 238 --KSHALGIKTIY-SFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             K   L IK    SF K+ N    LR  +   +E   +E      S E      G+H A
Sbjct: 244 VIKVELLNIKDQKGSFKKNDN----LRGFYDPLNETILIEENTFKISFE------GFHNA 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   L  D ++  K    F    GR K  +        T+ DESYNA+P S+
Sbjct: 294 SNFLFAYAVAKELGIDFESFNKF--DFVSLGGRNKILKSVKT----TIYDESYNASPESV 347

Query: 354 KAAISVLSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            A I  L      G+ R +  + G M E+GE S+ +H    E+ +L N S +    F   
Sbjct: 348 NACIKNLI-----GKPRNKFFIFGSMQELGEESEKYH---KEIFNLINNSDIEKCFF--- 396

Query: 413 ALKDALPRSIHVHYSETMDGLFLF---------IQSSLVDGDVVVVKSSNSCGFYRLINL 463
            + D     I+  Y +      +          I  S   GD +++K S      ++I L
Sbjct: 397 -ICDKKSEKIYTKYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIEL 455

Query: 464 L 464
           +
Sbjct: 456 I 456


>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 259

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 139/256 (54%), Gaps = 9/256 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++  A++G  IG        GIS D+R++   + F A+ G  +DGH+F+  AV +G
Sbjct: 4   FTVSEVCLAVKGSLIGGSAGAIFTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQG 63

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A G+++   D+V   G   I V   DD   AL  LA   RLR    +IA+TGS GKTTTK
Sbjct: 64  AAGVLISRRDIVIPSG---IAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M    L+S  K      +YNN IG+PLTL  +  D    + E+GM   GEIR L  +  
Sbjct: 121 DMTAAVLASRFKVLKTEANYNNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIRELAEVAL 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+T +   H+     +E IASAKAE+ E +++ G + LN D+ +   +++K+ A  
Sbjct: 181 PTVGVVTNVGETHIELLGSLENIASAKAELVENIQE-GLVILNADNPYVYAMRSKTKA-- 237

Query: 244 IKTIYSFGKSKNADFQ 259
              +  FG +  AD +
Sbjct: 238 --AVIFFGLNSQADVR 251


>gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 468

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 17/368 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S + +   G  ++V  + +G H A+N L            +      L  F P +GR
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIKVGLEAFAPVKGR 321

Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+ 
Sbjct: 322 LQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376

Query: 385 SQSFHIDL 392
             +FH ++
Sbjct: 377 GPAFHREI 384


>gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
 gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
          Length = 433

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 213/468 (45%), Gaps = 51/468 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L Q  Q H +          I+ DSR       F A+KG  +DG+ F   A++KG   V
Sbjct: 5   ELYQIYQAHPV----------ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYV 54

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V+    A  G     +  V+D L    +LA   R      ++ ITG+ GKTTTKE+++ 
Sbjct: 55  IVDEKEYAKEGEERYIL--VEDCLTTFKELAREHRRHFDIPVVGITGTNGKTTTKELVSA 112

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L          G++NN +GVP TL R+  + +  + E+G SH G+IR L   V P   +
Sbjct: 113 VLGEKFNVMFTQGNFNNDVGVPKTLFRLSPENEIAVVEMGASHPGDIRKLVEYVEPTCGM 172

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTI 247
           IT +  AHL  F   E +   K E+++ L      +F+N D+   E L   +    I  +
Sbjct: 173 ITNVGRAHLQGFGSFEGVKKTKGELYDYLAANDALVFINADN---EHLMQMAEQRNINRL 229

Query: 248 YSFGKSKNAD----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            ++GK +N D          F   +W+  S   W EVQ          H IG +   NML
Sbjct: 230 ITYGKDENCDVWGEVISCAPFLKFRWRTES-FDWHEVQT---------HLIGSYNIDNML 279

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I             AL  + P   R +    A N+    L+ ++YNANP+SM AAI
Sbjct: 280 AAITIGLHFDVKPQQIDHALENYIPSNNRSQLEETAHNK----LVVDAYNANPSSMAAAI 335

Query: 358 SVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                +  PH    ++A+LG M E+GE+S   H  + + L    + +VWL G      KD
Sbjct: 336 ENFRMMDVPH----KMAILGQMGELGEVSHEEHQKVVDQLQTAGLENVWLVGDE---FKD 388

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +P S      + ++ +   ++++      +++K SNS   ++L  LL
Sbjct: 389 -IPCSYRKF--QNVEEVKEALKANQPHDHYILIKGSNSVKLFQLPELL 433


>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 471

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 182/374 (48%), Gaps = 20/374 (5%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V+ I+ D+R+++    + A++G  +DGHDF   A+ +GA  ++V   +      + 
Sbjct: 20  PDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLVERLL-----DVD 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P   V+D   AL ++A   +    A ++AITGS GKT+ K ++   L    + YA  G+
Sbjct: 75  APQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALVLSVLQQAGQAYANPGN 134

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN IG+PL +   P D DF I+E+G    G+I +LT + RP ++++  IA AHL     
Sbjct: 135 RNNEIGLPLAVIDAPEDADFAIYEMGAGKPGDIAYLTDIARPDVSLVNNIAAAHLERMGD 194

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +  +A+ K  I+  L   GT  +N DD+F   FE    +    G + +  FG   +A+  
Sbjct: 195 LLGVATTKGAIYAALPAGGTAVVNADDAFGAWFEQEVVRPAGTG-RQLLRFGLDASAEVT 253

Query: 260 LRKWKQCSEQS-WMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            R  +  +E S ++ V  QG+ ++E+     G H  +N L    I       +      L
Sbjct: 254 ARDVQAGAEGSRFVLVTPQGEAAIELALP--GRHNVRNALAAAAIGLACGVSLAAIAAGL 311

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               P  GR   +      G   L+D+SYNANP S+ AAI  L+            VLGD
Sbjct: 312 GQARPVAGRQVAHGL---PGGVVLVDDSYNANPGSVAAAIDALAASGDEA----WLVLGD 364

Query: 378 MCEMGELSQSFHID 391
           M E+G  + + H D
Sbjct: 365 MRELGPEAATLHAD 378


>gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
          Length = 427

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 216/440 (49%), Gaps = 33/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           I+ DSR+      FFA+KG  +DG+ +   A+  G    V+ N D    IG  +I V   
Sbjct: 16  ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G++NNHIG
Sbjct: 71  DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F   E +  
Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ + ++ G IF+  ++ + +     S A GI+ I ++G   +A F   +   C 
Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  + QGK   V  H IG +   N+L  + +        +   +A++ + P   R 
Sbjct: 244 PFLVFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385
           +  +   N+    LI ++YNANP+SMK A+   +   + P     +  +LGDM E+G  S
Sbjct: 304 QFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              H ++   +       V+L G H   + K+  P +       T + +   ++   + G
Sbjct: 355 DELHAEVVAQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMVEELRKQPLKG 407

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K S+S G  +L ++L
Sbjct: 408 YHILIKGSHSMGLEKLADIL 427


>gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis TXDOH]
          Length = 468

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 176/375 (46%), Gaps = 31/375 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S G  ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----STGEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +   A  G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGERARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++           GI  + + G ++  DF L    + 
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY----------AGIWRVAATG-NRLVDFALHGLGRD 253

Query: 267 S--------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +        + S + +      ++V  + +G H A+N L            +      L 
Sbjct: 254 TPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPLAAVKAGLE 313

Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F P +GR +    AL      T+ID++YNANP SM+AAI VL+  S      R+ V+G+
Sbjct: 314 AFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACS----APRVLVIGE 369

Query: 378 MCEMGELSQSFHIDL 392
           M E+G+   +FH ++
Sbjct: 370 MGEVGDEGPAFHREI 384


>gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
 gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 183/377 (48%), Gaps = 17/377 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R +     F A+KG  +D HDF   AV  GAG ++V+  +     +L  P   V 
Sbjct: 27  VKTDTRKVTAGCLFVALKGERFDAHDFAAAAVAAGAGALLVSQRL-----ALDAPQLVVA 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +LA   R +  A ++++TGS GKT+ KEM    LS   +     G++NN IGV
Sbjct: 82  DTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVKEMTAAILSECGEVLYTAGNFNNDIGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    DF + ELG +H+GEI + + L RP  A+I  +A AHL  F  +  +A A
Sbjct: 142 PLTLLRLQPQHDFAVIELGANHIGEIAYTSALARPQAALINNLAAAHLEGFGSLAGVAQA 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EIF GL   G   +N D++ +   ++    L  KT++ F     A  +    +   + 
Sbjct: 202 KGEIFTGLPTDGVAIINADNNDWPHWQSM---LDGKTVWCFSPQATAGVEFFASEVRGDG 258

Query: 270 SWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  + QL     S E+V    G H   N L    +   + A +    + LS      GR 
Sbjct: 259 NGTQFQLHSPFGSAEIVLPLPGRHNVANALAAAALAMSVGASLKAVRQGLSQLQAVPGRM 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                A N+    L+D+SYNAN  SM  A  VL+++     G R+ V+GDM E+G  +Q 
Sbjct: 319 FPIVLAANK---LLLDDSYNANVGSMTTAAQVLAEMP----GYRVMVVGDMDELGAEAQE 371

Query: 388 FHIDLAEVLSLYNISHV 404
            H  + E      I  V
Sbjct: 372 CHRQVGEAARRAGIDKV 388


>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 469

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 146/475 (30%), Positives = 223/475 (46%), Gaps = 28/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T  +L +   G  I   P   ++ +S D+R +   E FFA+ G  +D H+F+  A
Sbjct: 1   MKPV-TLKELERIACGRIIQGDPGTVLSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG +VV+       G   +PV  V++ L AL  LA   R    A ++A+TGS GKT
Sbjct: 60  AGAGAGCLVVSRTADLPAG---VPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKT 116

Query: 121 TTKEM----LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           TTK+M    L+  L ++K      G++NN IG+PLTL R+    +  + E+ M   GEI 
Sbjct: 117 TTKDMTASILSTRLRTLKSE----GNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEID 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  + +P  AVIT I  AHL     +  IA+AK E+ E +   G   LN +  F     
Sbjct: 173 ALCRIAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRREA 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +      K IY +G    AD +    +     S  EV L G+  E      G H   N 
Sbjct: 233 GRCRG---KVIY-YGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G+   L    +   + L+        G R    +      +I+++YNANPAS KAA
Sbjct: 289 LAAIGVARELGLTWEEVARGLAAVTLT---GMRLEI-IEAKNLRIINDAYNANPASAKAA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-----WLSGFHV 411
           + VL +++  G  R +AVLG+M E+G  +   H ++ E  +   +S +       +G   
Sbjct: 345 LQVLKEMA--GGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGDLAAGIAE 402

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL   LP       ++ M    + ++  + DGDVV+VK S       ++  LL+
Sbjct: 403 GALDAGLPAERIFRCADNMQAAGI-LEELIRDGDVVLVKGSRGMKMEEIVRCLLK 456


>gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 177/363 (48%), Gaps = 23/363 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  AS+        
Sbjct: 24  VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143
            VDD L AL  LA A R      +  ITGSVGKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGNDAVLATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A+      AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNALRAHIGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + K
Sbjct: 200 VGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFKTATLNLNTRTFGIDSGDVHAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315

Query: 323 KEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            +G     R  +  G    TLID++YNANP SMKAAI+VL+++       RI V+GDM E
Sbjct: 316 IKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAINVLARMP----APRIFVMGDMGE 366

Query: 381 MGE 383
           +GE
Sbjct: 367 LGE 369


>gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 452

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 16/379 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P  
Sbjct: 24  IDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVSRKL-----DIDLPQL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   A  +LA   R +  A ++A+TGS GKT+ KEM    L     T    G+ NN 
Sbjct: 79  VVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYTAGNLNND 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP+TL R+  + ++ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +
Sbjct: 139 IGVPMTLLRLTPEHEYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQ 265
           A AK EIF GL   G   LN D++  + L  +S  +G + ++ F  +   +DF       
Sbjct: 199 AKAKGEIFTGLPANGIAILNADNN--DWLNWQS-VIGDRKVWRFSPNLDTSDFSATNIHI 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  +   ++     ++V+    G H   N L    +   + A +      L+      G
Sbjct: 256 TSHGTEFTLRTPTGDVDVLLPLPGRHNIANALAASALAMAVGAPLQAIKAGLAKLKAVPG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R        NQ    L+D+SYNAN  SM AA  VLS++     G R+ V+GDM E+G+ +
Sbjct: 316 RLFPVHLGENQ---LLLDDSYNANVGSMTAAAQVLSEMP----GYRVMVVGDMAELGDEA 368

Query: 386 QSFHIDLAEVLSLYNISHV 404
           ++ H  + E      I  V
Sbjct: 369 EACHQQVGEAAKAAGIDKV 387


>gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 609

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 191/401 (47%), Gaps = 32/401 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+  NTD+          +
Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDIADE------RI 248

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YNN
Sbjct: 249 VKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNN 308

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P T+  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + 
Sbjct: 309 HIGLPYTILNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDN 368

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E + K  T F+  DD +   L           +   G +++ +F++  ++ 
Sbjct: 369 VFKAKTELLEFVNKENT-FVCGDDVYLAKL----------DVNKIGFNEDNNFRIESYEF 417

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + S  +  L GK  E+    +G H   N  + + +   +    +   + L        
Sbjct: 418 SDKGS--KFTLDGKEYEM--SLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSM 473

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE  
Sbjct: 474 RFQEIRV----GEDIYINDAYNASPTSMKAAIDTLNEI--YDDKYKIAILGDMLELGEDE 527

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             +H+++   L    I  ++L G  +    D   ++    Y
Sbjct: 528 VKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568


>gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 211/447 (47%), Gaps = 42/447 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A++ G+  V+++    A  G     +  V+
Sbjct: 16  VTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEAEYALAGDSHYIL--VN 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    II ITG+ GKTTTKE++   LS         G+ NNHIGV
Sbjct: 74  NCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLRAEHDLGIIEMGASHPGDIKELVDITEPEYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------NAD 257
           K E+++ L   K  TIF+++D+ +      ++ A G+  I S+G +           N+ 
Sbjct: 194 KGELYDYLRERKNSTIFIHHDNLYL-----RNMARGLNLI-SYGSADELYVNGHVTGNSP 247

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           + + +W+   +         G+S EV    IG +   N L  + I        +    AL
Sbjct: 248 YLIFEWRAGKD---------GESHEVKTQLIGEYNFANALAAVTIGHFFEVASEKIDAAL 298

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             + P+  R +  + A N    TLI ++YNANP SM+A+IS    +       ++ +LGD
Sbjct: 299 REYTPQNNRSQLKQTADN----TLIIDAYNANPTSMQASISNFRNMEVE---NKMLILGD 351

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G+     H  +A+ L+      V L G    A K   P      Y +    +   +
Sbjct: 352 MRELGKDGPKEHQKIADFLAECGFKDVMLVGEQFAAAKHNFPT-----YPDA-PAVIEVL 405

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Q S   G  +++K SN      +I+ L
Sbjct: 406 QKSKPHGKTILIKGSNGIKLSTVIDYL 432


>gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
 gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
          Length = 524

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 183/391 (46%), Gaps = 35/391 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR ++    F AIKG   DGHD++  A + GA   +V   +  ++    +P  
Sbjct: 37  ITSVVTDSRQVSEGSLFVAIKGERVDGHDYVNQAARAGACAALVEHPVEGAV----LPQL 92

Query: 87  GVDDVLGALNKLAV--AARLRSKA-------TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            V D +G+L +LA    +R R  A       T++ ITGSVGKTTTK+++   L +   T 
Sbjct: 93  VVTDTIGSLGRLARYNISRRRQIALAEGKDFTVVGITGSVGKTTTKDLVKDLLQTAGTTI 152

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A +GS+NN IG+PLT  ++     + + E+G S  GEI +LT LV P IAV   +  AHL
Sbjct: 153 APVGSFNNEIGLPLTAVKVDETTRYFVAEMGASAAGEIAYLTRLVPPDIAVELKVGAAHL 212

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF------- 250
             F  ++ I  AK+E+ + L   G   LN  D    L+   +HA    T+  F       
Sbjct: 213 GGFGSVDGIRQAKSELVQALTSQGIAVLNAQDPNIRLMTGSTHA---STLVWFSDGRIDP 269

Query: 251 ----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               G S+   F      +  ++      L    +  +   +G     N++  L  VS+ 
Sbjct: 270 QNLPGDSRKQIFIYATDTRQDQEDHPSFTLHLPDLPGIPVTLGLSGVHNVMNALAAVSVA 329

Query: 307 TA-DVDTAIKALSVFHPKEGRGKRYRCA---LNQG-FFTLIDESYNANPASMKAAISVLS 361
               V     A  +F+ K     R   +   L  G  FTLID+S+NANP SMKA +  LS
Sbjct: 330 YCLGVRPQTIASVLFNHKAMSPHRMAVSLVTLTAGESFTLIDDSFNANPDSMKAGLDALS 389

Query: 362 QISPHGEGR---RIAVLGDMCEMGELSQSFH 389
                  G    +IAVLG M E+G   +  H
Sbjct: 390 GWKSAESGNEPVKIAVLGSMLELGPREEDLH 420


>gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
 gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
          Length = 609

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 190/401 (47%), Gaps = 32/401 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+  NTD+          +
Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDIADE------RI 248

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YNN
Sbjct: 249 VKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNN 308

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + 
Sbjct: 309 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDN 368

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E + K  T F+  DD +   L           +   G +++ +F +  ++ 
Sbjct: 369 VFKAKTELLEFVNKENT-FVCGDDVYLAKL----------DVNKIGFNEDNNFIIESYEF 417

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + S  +  L GK  E+    +G H   N  + + +   +    +   + L        
Sbjct: 418 SDKGS--KFTLDGKEYEM--SLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSM 473

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE  
Sbjct: 474 RFQEIRV----GEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGEDE 527

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             +H+++   L    I  ++L G  +    D   ++    Y
Sbjct: 528 VKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568


>gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 466

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 214/467 (45%), Gaps = 58/467 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           +  DSR+I     F  + G  +DGH F+    +KG     ++ D      +L+IP     
Sbjct: 30  VCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFISKDC-----NLAIPEELLY 84

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + VDD   A  KLA   R      ++A+TGS GKTTT+E++  +L  + +  A   + NN
Sbjct: 85  WQVDDTQEAYQKLAFLHRRLFSIPVVAVTGSAGKTTTRELIHSSLVPLGEVLATSNNNNN 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVP TL +  V+    + E+ M  LG+I  L+    P IAVIT I  +H+      + 
Sbjct: 145 DIGVPFTLLKANVNHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQN 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFEL--------------LKAKSHALGIKTIYSFG 251
           IASAK EI   +   G + +   D   E               +++KS+        S  
Sbjct: 205 IASAKCEIAAHMNPNGFVIIPAGDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQ 264

Query: 252 KSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             KN D+        W+   +    ++ LQG+           H A N +  L +   L 
Sbjct: 265 TKKNVDYLGVLDSDNWQITYDGIIFQMPLQGR-----------HNAINFMFALAVAYELN 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D+ I+ LSV  P  GR      +L  G   ++DE+YNA+P S+ A++ +L+      
Sbjct: 314 VPLDS-IRNLSVNLPP-GRNH----SLTFGNINVLDETYNASPESVIASLDLLAT----K 363

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH------VWLSGFHVLALKDALPRS 421
            GR  AVLG+M E+GE +  +H    E +  ++I+       + ++G    A+  A    
Sbjct: 364 PGRHFAVLGNMYELGEKTIDYH----EQIVQHSIATGLTGLVICVNGPEAEAMLLAGQPL 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            ++    T +  FL ++S L  GD +++K+S      R++ LL E +
Sbjct: 420 SYIEVVSTPEDAFLILKSWLNSGDYLLLKASRKVSLERILPLLKEAY 466


>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
          Length = 473

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 208/465 (44%), Gaps = 59/465 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   + F A+ G   DGH ++L A + GA  +VV  + V +   L++P   V+
Sbjct: 43  VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVV--EHVET--GLNVPQLVVE 98

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNNH 146
           +   A   +A A R R    + A+ GS GKTTT +M+   L++   ++  +A  G++NN 
Sbjct: 99  NSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIHATEGNFNND 158

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP TL  +       + E GM+H GE+  L   +RP + ++T     H +    + E 
Sbjct: 159 VGVPHTLLGLHCGCRAAVVEAGMNHRGEMARLADWIRPTVVLMTNAQREHQAYLETVAEA 218

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265
           A     +   L   G      DD   ++  + + A G++T+ Y+  +   AD +      
Sbjct: 219 AFENGLLIAALPNDGVAVYPADDPCADVWASYALARGVRTLTYATAEGVAADVRGE---- 274

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKA 316
                     + GK + ++ +GI         G H   N +           DVD   + 
Sbjct: 275 ---------LVPGKGLRLLAYGIDRVIGLQVQGAHNIHNAVGAAAAALAQQIDVDAIAEG 325

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F    GRG R     +   FTLID++YN NP S  A+I++L++  P     RI + G
Sbjct: 326 LAAFKALPGRGARM---ASPAGFTLIDDAYNCNPDSAIASIAMLAEEKP----ARIFLFG 378

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---- 432
           DM E+G  ++ +H ++        I + W +G          P S H   +  +DG    
Sbjct: 379 DMGELGRDAELWHAEVGGAAKTLGIDYFWAAG----------PLSKHAAEAFGIDGVRGR 428

Query: 433 -------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                  L   +    + G  V VK+S+S GF +++   L+ FPA
Sbjct: 429 WFADRDELIAHLPELPLKGATVAVKASHSSGFGKVVE-TLKHFPA 472


>gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 458

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 224/449 (49%), Gaps = 40/449 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84
           +GI  D+R + P   F +++G H+DG+ F + A+++G    +V  D ++ I  +      
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALV--DDLSYIDEVDESDAD 75

Query: 85  -----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                ++  D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A 
Sbjct: 76  LRERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHAT 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+YNN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS 
Sbjct: 136 QGNYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSG 195

Query: 200 FSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---- 254
           F   E +  AK+E++  L E +G  F N +D         S+  G+ T+Y  G +     
Sbjct: 196 FGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTL-----ISNLNGLPTVYYNGTTSPRVT 250

Query: 255 -----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  +  L K + C +++       G+S ++    +G +   N+L  + +      D
Sbjct: 251 GAVLPTDESGLLKIEWCDQET-------GESYQLATKLVGDYNLNNILAAITVGLHFGLD 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  +A++ + P   R +       QG   ++D  YNANP+SM+ A+S    +   G  
Sbjct: 304 PKTINEAVTNYQPHNERSQVLP-PTAQGNRVILD-CYNANPSSMEVALSSYFTMDCQGLN 361

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVH 425
           R + +LGDM E+G+ ++S HI +   +  Y + +     +  G +  AL+ A   S H  
Sbjct: 362 RML-ILGDMNELGDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFALQ-ARYGSEHFI 419

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +   L  +          +++K SNS
Sbjct: 420 FFPSATALKQYFTRHQPQHSFILIKGSNS 448


>gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
 gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
          Length = 481

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 223/490 (45%), Gaps = 44/490 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  D+L+A     +     G V  +++DSR  A   AF A  G   DG+ F   A+ + A
Sbjct: 5   SVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARAA 64

Query: 66  GLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVG 118
            +V+         +     G   +   G DD    L +LA A  RL  + T++ +TGSVG
Sbjct: 65  TVVLTGPAPKGCAEAAERHGCALLRAEG-DDGEEFLLRLAGAWRRLNPQWTVVGVTGSVG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   L +  + +A  G++NN IG+PLTL       +  + E+GM+H GE+  L
Sbjct: 124 KTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGELSRL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--------IFLNYDDS 230
               RP +A+IT +  +H+      E IA AKAEI  G+  + +        + L  D+ 
Sbjct: 184 AACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDND 243

Query: 231 FFELLKAKSHA-LGIKTIYSFGKSKN---------ADFQLRKWKQCSEQSWMEVQLQGKS 280
           F  L++ +  A  G++ ++  G+  +          D  L +++      W E    G  
Sbjct: 244 FAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMP 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H+  ++L+ + I   L  D   A+  ++          R       G   
Sbjct: 304 --------GRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTH---MRLEVVTAPGRPR 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+SYNA+P+S+ AA+ VL  ++    GRR+AVLG++ E+G+ +   H  +    +   
Sbjct: 353 MIDDSYNASPSSVAAALDVLCSMA--CTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKP 410

Query: 401 ISHVWLSGFH--VLALKDALPRSIHVHYSETMDGL---FLFIQSSLVDGDVVVVKSSNSC 455
           +  + L G H      + AL         E +D +      I   L + D+V+ K+S + 
Sbjct: 411 LDLLVLVGTHDAAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVLAKASRAS 470

Query: 456 GFYRLINLLL 465
           G  R +  +L
Sbjct: 471 GLDRFVKGVL 480


>gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
 gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
          Length = 434

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 205/445 (46%), Gaps = 41/445 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85
           V+ I +DSR    +  F  IKG   DGH FI  A++ GA  +    D    S     +  
Sbjct: 12  VDKIILDSREDCTKGLFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSELSKEYPEVRF 71

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+  + AL  L   AR      +I +TGSVGKTTT+ M+  ALS  K  +   G+ N+
Sbjct: 72  ISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETKGNANS 131

Query: 146 HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
            +G+P+TL  M  +  +  + ELG+S  GE+  +  +    IAV T I  AHL N    E
Sbjct: 132 QLGLPITLFSMAKENKEISVIELGISIPGEMHRIGEIASCDIAVFTNIGSAHLENLKTKE 191

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSK-NADFQLRK 262
                K  I EG +K  +++L   D+    L + K  A+G       G+ K N  F  +K
Sbjct: 192 NTCFEKMHILEGNQKEVSLYLPKKDAILGTLTEEKIRAMGF-----LGEKKLNLFFYEKK 246

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                E+  + V              G HM  N  + + I   L       ++ L  F  
Sbjct: 247 -----EEIPLSVP-------------GEHMEDNASVAMAIGLSLGLHKQKLLQGLLEFQG 288

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GRG R      +    +ID+SYNA+P SMKA++ VL+  S  G  R+IAVLGDM E+G
Sbjct: 289 LKGRGGRLS---TEDGIMIIDDSYNASPDSMKASLKVLA--SEKGAKRKIAVLGDMNELG 343

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-----LPRSIHVHYSETMDGLFLFI 437
           +   ++H ++ E+L    I  ++  G     ++ A     LP     +  E    L   I
Sbjct: 344 DNEIAYHREIGELLKSLPIDALFTLGKKGEEIRKAMGEKLLPGKACFNLEELSLSLEEEI 403

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462
           +     GD+++ K+SNS    ++I 
Sbjct: 404 KP----GDLLLFKASNSLSLSKVIQ 424


>gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
 gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
          Length = 454

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 205/451 (45%), Gaps = 37/451 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SI 83
           ++ I  DSR IA  + F  +KG   DGH+FI  A + GA         VA+   +    +
Sbjct: 26  IHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFENGA---------VATFSRIELDDV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V D L A   LA     +    +IA+TGS GKTTTK+M+   L++  K Y   G+Y
Sbjct: 76  PYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTKDMIHDVLATTYKIYKTQGNY 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP      + E+G  HLG+I  L+ + +P I ++T I  AHL  F   
Sbjct: 136 NNEIGLPYTVLHMPDSTQKLVLEMGQDHLGDIDLLSKIAQPKIGIVTLIGEAHLEFFGSR 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+IA  K +I  G+ K GT+ +  D    + L         + +  FG  +  D  L + 
Sbjct: 196 EKIAQGKMQIANGMAKDGTLIVPADKIINDYLPDN------QKVVRFGPDQ--DIFLTEL 247

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHP 322
            +  +     V      +E+   G  Y+    ML T   V  L    D AI+ AL     
Sbjct: 248 VERKDSLSFAVNFMDGLIELPVTG-KYNATNAMLATY--VGQLEGVADEAIRSALKNLVL 304

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            + R   ++ A N     ++ + YNANP +MK  +     +  +  G++IA+L DM E+G
Sbjct: 305 TKNR-TEWKKASNGA--DILADVYNANPTAMKLILETFLTLPANEGGKKIALLADMKELG 361

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSETMD-----GL 433
           + S   H  +   L+  ++  +   G  +  L        P     ++ +T +      L
Sbjct: 362 KDSVQMHSQMIRALNPEDLDTLICYGEDIAELAQLASQVFPMGKVYYFKKTAEEDQFADL 421

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +Q+ L   D +++K SNS    +++  L
Sbjct: 422 VKQVQTILQPADQILLKGSNSMQLDKVLEAL 452


>gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
 gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
          Length = 474

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 211/467 (45%), Gaps = 59/467 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR +     F A  G H DGH +   AV             V +   + +P   V 
Sbjct: 31  VVIDSRKVEAGSLFAAFAGEHVDGHAYAERAVAA-------GAAAVLAARPVGVPAIVVP 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  AL  LA A   R    ++A+TGS GKT+TK+++   L S   T    GS NN IG+
Sbjct: 84  DVEKALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLQSHAPTVWTPGSLNNEIGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT  +   +    + E+G   +G I +LT L  P I ++  +  AH+  F G E+IA A
Sbjct: 144 PLTALQATAETRHLVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAQA 203

Query: 210 KAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------- 257
           K E+ E L      G   LN DD     + A++ A   +T+  FG++++AD         
Sbjct: 204 KGELVEALPAEADGGVAVLNADDLLVRAMSARTKA---RTVL-FGEAEDADVRATEVRMT 259

Query: 258 ------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                 F L     CS+   + ++L G+     HH      A  +   LG+ ++   ++ 
Sbjct: 260 PGGRPAFTLHTPTGCSD---VTLRLYGE-----HHVSNALAAAAVAHVLGMSAM---EIA 308

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE- 368
           TA+              R+R  + +     T+++++YNANP SM+AA+  L  +      
Sbjct: 309 TALSGAGTL-------SRWRMEVTERADGVTIVNDAYNANPESMRAALRALVAMGGAARA 361

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPR 420
             GR  AVLG M E+G+ S + H  +  +    N+S +   G        + A  +    
Sbjct: 362 TGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWG 421

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              V  S+    + L ++S L  GDVV+VK+S S G  R+   LLE 
Sbjct: 422 EESVLVSDAQAAVDL-LRSELRPGDVVLVKASRSIGLERVALALLER 467


>gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 613

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 198/407 (48%), Gaps = 37/407 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           V  + +DSR +     FFAI     +G+ +I   + KGA LV+  NTD+V         +
Sbjct: 203 VKNVVMDSRKVTEGSLFFAIN----NGNSYIKDVLDKGASLVIADNTDVVDE------RI 252

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YNN
Sbjct: 253 VKVSDTVATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNN 312

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + 
Sbjct: 313 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDN 372

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E ++K  T F+  DD +  L K   + +G     ++ + ++ +F  +  K 
Sbjct: 373 VFKAKTELLEFVDKEDT-FVCGDDVY--LAKLDVNKIGFNEENNY-RIESYEFSDKGSKF 428

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +    ++ L GK   + +  I   +A+ + +    +     D+  +            
Sbjct: 429 TLDGKEYQMSLLGKH-NISNTAIAIELAKKIGLGEEEIEEGLKDIKIS------------ 475

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R++  +  G    I+++YNA+P SM AAI  L++I  + +  +IA+LGDM E+GE  
Sbjct: 476 -GMRFQ-EIRVGQDIYINDAYNASPTSMMAAIDTLNEI--YNDKYKIAILGDMLELGEEE 531

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYS 427
             +H+++   L    I  ++L G  +     + +K+        HYS
Sbjct: 532 VKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKFEEHRFCHYS 578


>gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
          Length = 427

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 180/380 (47%), Gaps = 45/380 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+  +  + +DSR I     FFAI+    +G+ ++  A+ KGA LV+ +          
Sbjct: 15  LPKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIAD-----RYSGN 65

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              V  V++ +  + +LA   R   K  +IAITGS GKTTTK+++   LS   +T   +G
Sbjct: 66  HEKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLG 125

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +HL    
Sbjct: 126 NYNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLK 185

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +  AK E+   L + G    + DD F + + A             G  +  D+++ 
Sbjct: 186 TRENVFKAKTELLPYLPE-GCFISSGDDVFLKKIPA----------IHVGYDERNDYRIF 234

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL---- 317
            +++   +S    QL  K  E+     G H   N  M + I  ++  D  T  + L    
Sbjct: 235 GYQKKDRRSSF--QLNDKQYEIPLE--GKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIE 290

Query: 318 ---SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                F   E +G +Y           I+++YNA+P SM  A+  L + +      +IAV
Sbjct: 291 LSPMRFERSEYQGTKY-----------INDAYNASPISMGVALDSLVETTAEC---KIAV 336

Query: 375 LGDMCEMGELSQSFHIDLAE 394
           LGDM E+GE   +FH D+ E
Sbjct: 337 LGDMLELGEKEVTFHKDVIE 356


>gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase
           D-alanyl-D-alanine-adding enzyme;
           D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 459

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 217/455 (47%), Gaps = 51/455 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGS--LSIPV 85
           IS  S+ I     F  ++G   DGH++I  A++ GA   L   N  ++ ++ +      +
Sbjct: 33  ISTSSKEIQKNTLFVPLRG-ERDGHEYIADALKAGATGFLCEKNHPILKNLSNEDQKKAI 91

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSY 143
           F V D L AL  LA   R R    +IAITGS GKT+TK++L    S +  K       +Y
Sbjct: 92  F-VKDTLIALGTLANFHRNRFCPIVIAITGSSGKTSTKDLLGGLFSFLGSKSLVVTEKNY 150

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP TL R+       I E+GM+H GEI  L+ +  P  A+IT I  AH+ N    
Sbjct: 151 NNEIGVPFTLFRITERTQVVICEMGMNHRGEINRLSKMAEPTHALITNIGSAHIENLKSR 210

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA  K +I  GL   G +F+  D  F  L +AK             ++K ++  L+ W
Sbjct: 211 ENIAEEKIDIINGLRPNGVLFVPDDLDF--LGRAKQ------------RTKKSNVNLKIW 256

Query: 264 K--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT--LGIVSI----LTADVDTAIK 315
           K  +  E     VQ  G  +E     I +++  + L++   G++++       DV+    
Sbjct: 257 KHSKNPELKVNIVQKNGFLLEWRMEKIQWNIPGSKLLSNVRGMIAVGNFFQIPDVEMKKT 316

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-V 374
             +   P +      R  + +GF+T+ID+SYNANP SM ++I    Q   + + + I  V
Sbjct: 317 IRTYKSPNK------RLNIKKGFYTIIDDSYNANPESMLSSIDASIQ---YAQNKPIVWV 367

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETM 430
           LG M E+G+ S+ +H ++ + L  Y      L GF      D LP    V    H+   +
Sbjct: 368 LGTMKELGKFSKFYHEEIGKNLKKY--PKGTLLGFG----DDTLPMVKQVSNGKHFQSKV 421

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           D L  FI+  +    V++VK S S     +++ L+
Sbjct: 422 D-LVEFIKKEIPKQAVILVKGSRSMKMEEIVSELV 455


>gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
 gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
          Length = 464

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 184/385 (47%), Gaps = 41/385 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V   S D+R       FFA+KG ++D H ++ +AV +G   VVV  +       + +P  
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVEREC-----EIDVPQL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139
            V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC       
Sbjct: 80  VVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEQEVLYT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN +GVP+TL R+     + + ELG +H+GEI + T + +P   ++  +A AHL  
Sbjct: 137 FGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEG 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADF 258
           F  +  +A AK EI+ GL++ G   +N    + +  K     +G + + SF     ++D 
Sbjct: 197 FGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK----EIGSREMQSFSYIGSDSDS 252

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTAD 309
               W +      +E+ L G    +    G        +G H   N L    +   + A 
Sbjct: 253 YADYWAED-----VELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSNALAATSLAMSVGAT 307

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++ A+KA  +      +G+ Y   +N      ID++YNAN  SMK+AISVL     +   
Sbjct: 308 LE-AVKA-GLEQRSMVKGRLYPVQINDHCL-FIDDTYNANVDSMKSAISVLENYPAY--- 361

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394
            RI  +GDM E+GE S   H ++A+
Sbjct: 362 -RIFAVGDMAELGEESSKCHQEVAD 385


>gi|51246753|ref|YP_066637.1| putative bifunctional
            UDP-N-acetylmuramoylalanyl-D-glutamate--2,
            6-diaminopimelate
            ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
            ligase [Desulfotalea psychrophila LSv54]
 gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
            [Desulfotalea psychrophila LSv54]
          Length = 1014

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 217/485 (44%), Gaps = 44/485 (9%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            WT   L+ A  G  IG +    + G ++ DSRS+     F A++G ++DGH ++   V  
Sbjct: 542  WTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAA 601

Query: 64   GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGK 119
            GA  +VV      +   L+ P   V D   AL  +A A R      +K  ++ ITGS GK
Sbjct: 602  GAACLVVEK----ARPDLTCPQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGK 657

Query: 120  TTTKEMLTIALSSIKKTYA---------CIGSYNNHIGVPLTLARMPVDV--DFGIFELG 168
            TT KEM    L+S+    A           G++NN IG+PL+L  +P+D      + E+G
Sbjct: 658  TTIKEMTASILASLWPAGAEYPENVVLKTEGNFNNLIGLPLSL--LPLDNMHRAAVLEMG 715

Query: 169  MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            M+  GEI  L  + +P I  +  +  AHLS    IE +A AK E+F        + +N D
Sbjct: 716  MNSPGEIARLAEIAQPDICCVANVHAAHLSGLGSIEGVARAKEELFAHAPVDSILVVNLD 775

Query: 229  DS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHH 286
            D    E+ K        K  YS   + +AD            S    + L  +S  V   
Sbjct: 776  DPHVVEMAKGYEQK---KICYSLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLD 832

Query: 287  GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             +G H   N L   GI     A        L  +     R +R R + N   +T+I + Y
Sbjct: 833  TLGEHNVSNALAAAGIALAAGASPQQIALGLGSYKTPSKRLERIRTSCN---WTIISDCY 889

Query: 347  NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            NANPASM A +  L+ ++  GE ++IA++GDM E+GE ++  H  +  +    ++ ++ +
Sbjct: 890  NANPASMSAGLRTLATVA--GE-KKIAIVGDMLELGEFAEEAHRQIGSLAGELSLDYLLI 946

Query: 407  SG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCG 456
             G         AL   + +   V    + + +  ++Q+   DG     D+V +K S    
Sbjct: 947  VGEFASFLQQAALNSGMGKE-QVLVFPSKEAIIDWLQAYQADGGLGEKDIVFIKGSRGMQ 1005

Query: 457  FYRLI 461
               LI
Sbjct: 1006 LETLI 1010



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 150/390 (38%), Gaps = 51/390 (13%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V  ++ DSR +A    F A +G   DGH ++  A+ +G  +V+V    V+       P 
Sbjct: 39  LVADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYAHCPA 98

Query: 85  -VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V  V D   A  K+     A    K +++ ITG+ GKTT   +L   L+ +      IG
Sbjct: 99  LVIEVADSQAAYGKILANYFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLGHQVGVIG 158

Query: 142 SYNNH----------IGVPLT----------LARMP-VDVDFGIFE-----LGMSHLGEI 175
           + NN           I   LT          L RM    VD  I E     +  + +G +
Sbjct: 159 TVNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVIMEVSSHAISQARIGAL 218

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE- 233
           RF        +A+ T ++  HL     +E+  SAK  +F   L++ G   +  D    + 
Sbjct: 219 RF-------DLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQT 271

Query: 234 --LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIG 289
             L +      G     S+G+   +D QL  ++    ++   V+L    + +E     +G
Sbjct: 272 EFLQRLHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLVG 331

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESY 346
                N+L  +     L        + +       GR +R        N      +D  Y
Sbjct: 332 RFNIDNLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVD--Y 389

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P ++   +S L  + PHG+   IAV G
Sbjct: 390 AHTPDALDKLLSTLGDV-PHGD--LIAVFG 416


>gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
 gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
          Length = 475

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 183/405 (45%), Gaps = 35/405 (8%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N ++T  +    I G ++          +S DSRS  P + F A+KG  +D HDF+    
Sbjct: 6   NAMFTLREAAALIPGATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVA 65

Query: 62  QKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +      V+  +VA +    ++P   V D    L  LA   R +    ++A+TGS GKT
Sbjct: 66  ARN-----VSAVLVARVPDGWTVPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKT 120

Query: 121 TTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+     A     +  A  G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 121 TVKEMIASIFAAAVGAAERLATAGNFNNDVGLPLTLFRLNAAHRLAVVELGMNHPGETSL 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +AV+      H    + +E +A   A +   L+  G      +D++  + + 
Sbjct: 181 LAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALKPEGVAVFPANDAYASIWRV 240

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--------WMEVQLQGKSMEVVHHGIG 289
              A G + I         DF L   ++ +E +         + ++    +++V    +G
Sbjct: 241 A--ATGNRII---------DFALNTAERATEAAVTGTFDGGLLSIETPEGALQVSLQVLG 289

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNA 348
            H A N L            +D   + L  F   +GR +  R AL       +ID++YNA
Sbjct: 290 DHNAHNALAATSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNA 349

Query: 349 NPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           NP SM+AAI VL S  SP     R+ V+GDM E+G+    FH ++
Sbjct: 350 NPDSMRAAIDVLASHASP-----RVLVMGDMGEVGDNGPEFHREI 389


>gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 450

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 201/432 (46%), Gaps = 33/432 (7%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVFG 87
           +D R   P   F A  G   DGHDF   A + GA         VA +GS    LS  V  
Sbjct: 34  LDGRQAEPGGLFVAFAGDRVDGHDFAEQAGEAGA---------VAVLGSRPTSLSTVVVK 84

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                       V  RLR   T+  +TGS GKT+TK++L   +SS   T A + S+NN I
Sbjct: 85  DVQAAVQALAAYVVGRLRDGLTVAGLTGSQGKTSTKDLLATVVSSTAPTIAAVDSFNNEI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP+T+ R      F + E+G   +G+I  LT LV P +AV+  +  +HLS F   + IA
Sbjct: 145 GVPVTMLRADAASRFLVLEMGARRVGDIADLTGLVAPDVAVVLNVGQSHLSYFGSRQAIA 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265
            AK E+  GL   GT  LN DD     +++ ++      + +FG +++AD ++      +
Sbjct: 205 KAKGELVRGLAPGGTAVLNADDPVVVAMRSLTNG----PVLTFGYAEHADVRVVDLTLDR 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S  S+      G +  V    +G H A N    +         +D A  AL+       
Sbjct: 261 LSRPSFTLRTADGSAF-VELPLVGAHQAHNASAAVAAGLAAGVPLDVAASALATASL--- 316

Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              ++R  L +     TL+++S+N+NP S +AA+  L+ I     GRRIAVLG+M E+G+
Sbjct: 317 --SKWRMELRELDSGATLLNDSFNSNPDSTRAALDALAGIE---GGRRIAVLGEMLELGD 371

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             +S H    E  +      V + G   L    A   ++ +  +   D    +++  +  
Sbjct: 372 DHESEHRAAGEYAAARADVVVAVGGIASLVADGAGDSAVALPDN---DAAIDWLRGHITA 428

Query: 444 GDVVVVKSSNSC 455
           GDVV+VK+S   
Sbjct: 429 GDVVLVKASRGV 440


>gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 487

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 208/461 (45%), Gaps = 46/461 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR+  P   F A+ G   DG D    AV  GA LV+   ++    G+  + V   +
Sbjct: 30  VVVDSRAAGPGSLFVALPGERVDGADHAAGAVAAGASLVLAEREVELPAGAALVVV---E 86

Query: 90  DVLGALNKLA--VAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           D + AL +LA  V  RLRS  +   ++ +TGS GKTTTK++L   L+      A  GS+N
Sbjct: 87  DGVTALGRLARGVLERLRSTGSGPLVVGVTGSQGKTTTKDLLARVLAPAGPVVAPAGSFN 146

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG PLT+ R        + E+G   LG I  L  + RP + V   +  AH   F  +E
Sbjct: 147 NEIGAPLTVLRADRGTVTLVVEMGARGLGHIAALCAIARPDVGVELVVGAAHAGEFGSLE 206

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKW 263
             A AK E+ E L   G   LN DD     +  ++ A     + +FG+  +AD + L   
Sbjct: 207 TTARAKGELVEALPAEGLAVLNADDDRVAAMATRTRA----RVLTFGRGAHADVRALDVE 262

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN----MLMTLGIVSILTADVDTAIKALSV 319
                +    +Q  G    V     G H   N      + LG    L  +V  ++ A + 
Sbjct: 263 LDALARPRFTLQHGGGRARVQLQLHGEHQVTNALAAAAVALGTGRPLE-EVAASLSAATE 321

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDM 378
             P      R +        T++ ++YNANP SM+AA+  L  ++  G GRR  AVLG+M
Sbjct: 322 LSP-----GRMQVVERPDGVTVVHDAYNANPDSMRAALKALVGMA--GAGRRTWAVLGEM 374

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV------------HY 426
            E+G  S+  H  L   +   ++  + + G        A  R ++              +
Sbjct: 375 LELGPASREEHDLLGRTVVRLDVDQLLVVG--------AGARPVYTGAVMEGSWGEEAAF 426

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  +D    F+++ L  GDVV+VKSSN  G  RL   L+ +
Sbjct: 427 ATDVDDALEFLRARLRPGDVVLVKSSNGAGLARLATTLIHD 467


>gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 455

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 175/362 (48%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D  A  G+L    
Sbjct: 24  VSRIVTDSRDICAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSHEDCAALDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142
             VDD L AL  LA A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLKEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G  +IA AK+EI++GL + G   +  +D    + +  S     +T        +A+  + 
Sbjct: 199 GTLDIAKAKSEIYQGLGEDGLALIPCEDEHAAVFQTTSQGHQQRTFGVDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N      +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGNERAAVVLPVPGRHNVHNAAAATALALAAGLSLNDVAEGLQGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
 gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
          Length = 475

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 210/455 (46%), Gaps = 45/455 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+ IDSR +A    F A+ G   DGHDF   A   GA  V+    +      ++ PV 
Sbjct: 26  VTGVVIDSRQVAAGALFVAVAGERVDGHDFAAAAAGAGAVAVLAARPVGVPAVVVADPVA 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                  AL  LA   R RS AT++A+TGS GKTTTK++L   L  +  T A  GS+NN 
Sbjct: 86  -------ALAALAAQVRTRSSATVVAVTGSAGKTTTKDLLADLLGELGPTVAAAGSFNNE 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
           IG+PLT+ R+     F + E+G    G I  L  L RP I V+  +  AHL  ++ G   
Sbjct: 139 IGLPLTVTRIEPATRFAVLEMGARGPGHIAALCELARPRIGVVLNVGSAHLGQYADGRAG 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK E+ E    +  + LN DD     + A++       + +FG+ + AD +    + 
Sbjct: 199 IARAKGELAEA--ASDAVVLNADDPLVAGMAARARG----EVITFGEGERADVRAHDVRV 252

Query: 266 CSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + ++  ++   G+   V    +G H   + L    +   L      A +ALS    + 
Sbjct: 253 GDDGRARFDLVAAGERHPVALTLVGEHQVGSALAAAAVAIRLGLPPARAAEALSRARARS 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGE 383
               R   A+     T+I+++YNANP SM+AA+  L  +S    GRR  AVLG M E+G 
Sbjct: 313 --RWRMEVAVTDTGVTVINDAYNANPESMRAALKTLVDLS---RGRRAWAVLGGMEELGA 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--------- 434
            +   H  L  ++    +  +   G           R+  +H   +++G +         
Sbjct: 368 SADDEHDALGRLVVRLGVEQLVAIG----------ERARRIHLGASLEGSWSGESVWVAD 417

Query: 435 -----LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  ++  LV GDVV+VK+S + G  R+ + L
Sbjct: 418 VEQACTLLREQLVPGDVVLVKASRAFGLERVASEL 452


>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
 gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 468

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 216/471 (45%), Gaps = 23/471 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI--LHAVQK 63
           T  +++ A  G  +   P   V  +  DSR +     F  +KG   D H F+    A   
Sbjct: 6   TVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASGA 65

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A L   +T M A    ++     VD    AL  +A A R R    ++ ITGS GKTTTK
Sbjct: 66  AAALTQEHTRMEAEEAWIA-----VDSTQLALQHIAAAYRQRFSIPVVGITGSAGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM  +ALS+  K     G++N+ IG+PL + +   + +  + E+G+S  GE+  L  +  
Sbjct: 121 EMTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLAQVAE 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AV+T +   H+      E I   K  I +   +   +FLN DD     L+ K+   G
Sbjct: 181 PKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT---G 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
            + ++ +G +   DF+        E +       G+ S+EV+   +G H   + L  L +
Sbjct: 238 YEAVF-YGTAPWCDFRAEGITVQGETTAFRCLAPGRESVEVILPVLGMHHVLDALAALAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +D A  AL  + P   R + Y   +N+    +ID+SYN++P + K+++SVL+ 
Sbjct: 297 AERLGVPLDRAAAALGDYRPLAMRQQIYH--VNE--VAVIDDSYNSSPGAAKSSLSVLAG 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALP 419
                 GRR+AVL DM E+GE S+  H ++    +   +  +   G    A+ +   ++ 
Sbjct: 353 FRA---GRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVGPEAKAVAEGARSVR 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             I     +        ++S L  GD V+VK S       ++  LL +FPA
Sbjct: 410 SGIDCRVFDHNRQAAAELKSFLSPGDAVLVKGSRGMHTDEIVRALL-QFPA 459


>gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 458

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 178/372 (47%), Gaps = 29/372 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N I ID++ I P   F A+ G  +D H FI  A++K     V   ++   +     P 
Sbjct: 23  LINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHV-----PY 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V++   AL ++A   R ++KA I+AITGS GKT+ KEM    L     T + I + NN
Sbjct: 78  IIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNGNTISTIDNLNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVP+TL ++  +  +G+ ELG S  GEI + +++ +P I +I  I  AHL  F  +  
Sbjct: 138 NIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSLLG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           ++ AK+EIF GL+   T+ +N D   F   K       I   +S  K K ++F     K 
Sbjct: 198 VSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNI-LFFSIKKKKYSNFFCSNIKI 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN--------MLMTLGIVSILTADVDTAIKAL 317
               +   +      + +    +GY    N          + + +  I    +DT I + 
Sbjct: 257 HIHSTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS- 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                     KR    + +    LID++YN+N +SM +AI VL ++     G +I V GD
Sbjct: 316 ----------KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERM----PGYKILVTGD 361

Query: 378 MCEMGELSQSFH 389
           M E+GE S  +H
Sbjct: 362 MAELGENSMMYH 373


>gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-064]
          Length = 392

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 190/391 (48%), Gaps = 19/391 (4%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +  PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   
Sbjct: 13  MDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTG 72

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+   
Sbjct: 73  GNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYL 132

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              EEIA AK EI  GL  +G +   ++++         +  G     +FGKS+ A+   
Sbjct: 133 GSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYP 187

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKAL 317
            + +  +E +      +   +E+    IG H   N +  +     + I    + +A+K +
Sbjct: 188 LEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM 246

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 E    R      +    +++++YN++P ++K  +     +   G+ + + VL D
Sbjct: 247 ------ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLAD 299

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLF 434
           M E+G+LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L 
Sbjct: 300 MLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLE 359

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + S +   + ++VK S   G   ++  L+
Sbjct: 360 TALLSEMNGNEWILVKGSYGMGLKDVVENLI 390


>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 487

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 200/463 (43%), Gaps = 38/463 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDF-----------ILHAVQKGAGLVVVNTDMVASI 78
           +  DSR +AP   F A+ G   DGHDF           +L A +  A  V+V      + 
Sbjct: 30  VEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREVDAPAVIVPPVPAEAT 89

Query: 79  GSLSIPVFGVDDVLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           G +++   G  D  GA    A       V  RL  + T++ +TGS GKT+TK+++   L 
Sbjct: 90  GLMAL--AGDTDGSGAAVLAALARLARYVVDRL-PRLTVVGVTGSSGKTSTKDLIAQLLE 146

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +  T A  GS+NN +G P T  R   D    + EL    +G I  L  +  P I  +  
Sbjct: 147 PMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLN 206

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +  AHL  F   E +A AK E+ E L   G   LN DD     + +++ A     +   G
Sbjct: 207 VGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRA----RVVLVG 262

Query: 252 KSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +S  A  +       + +  S+  V  QG S +V     G H   N L    I   L A 
Sbjct: 263 ESPGAHVRAEDIVLDEQARPSFTLVAPQG-SAQVSLPLHGEHHVGNALSAAAIALELGAT 321

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++     LS       R  R   A      T+++++YNANP SM+AA+  L+ ++    G
Sbjct: 322 LEQVADRLSGVRRVSAR--RMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRPG 379

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R  AVLG M E+GE     H ++  +    NI  + + G     +      S+   + E 
Sbjct: 380 RAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGA--SLEGSWGEE 437

Query: 430 ------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +D     +++ L  GDVV+ K+S     +R+   L+E
Sbjct: 438 SVLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 480


>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
          Length = 465

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 208/459 (45%), Gaps = 33/459 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GI+ DSR++ P + +  + G ++DGH+F   ++  GA   +              P+ 
Sbjct: 17  ISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCPVPDELAEAPLV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L AL +LA A R      I+ ITGS GKTTTK++    L +I + +   G+ NNH
Sbjct: 77  LVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAVLGTIYRVHKTAGNLNNH 136

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT+ ++   ++  + E+GMS  GEI  L+ +  P  A+IT +  AH+        I
Sbjct: 137 IGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITNVGDAHMLQLGSRAGI 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL   G +  N D+       A+        +  FG + +  +     +  
Sbjct: 197 AEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFGAAADCQWSASNVQIG 256

Query: 267 SEQSWMEV-----------QLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDT 312
           S+ S  +V           QL+G ++ V     G H   N L  + +     +  A +  
Sbjct: 257 SDASAFDVVSPLLSAEEAEQLRGITLPVP----GAHNVMNALAAIAVAYRFGVPAAQIRD 312

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +  +++       G R +         +++++YNANP +++AA+ ++++++  G  R+ 
Sbjct: 313 GLATVTM------TGMRIQPVDAFNGAKILNDAYNANPTAVRAAVDLVAELT--GYRRKW 364

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVH 425
            VL DM E+G      H  +   ++      V   G     + D       A  R+  V 
Sbjct: 365 VVLADMLELGPEEADLHRGIGAYVTPEKADAVLTWGPLAQYIADGAAVAFEAAGRADDVR 424

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + E  + L  +++  L   D+V+VK S      +++  L
Sbjct: 425 HFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVVQAL 463


>gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 200/463 (43%), Gaps = 38/463 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDF-----------ILHAVQKGAGLVVVNTDMVASI 78
           +  DSR +AP   F A+ G   DGHDF           +L A +  A  V+V      + 
Sbjct: 1   MEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREVDAPAVIVPPVPAEAT 60

Query: 79  GSLSIPVFGVDDVLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           G +++   G  D  GA    A       V  RL  + T++ +TGS GKT+TK+++   L 
Sbjct: 61  GLMAL--AGDTDGSGAAVLAALARLARYVVDRL-PRLTVVGVTGSSGKTSTKDLIAQLLE 117

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +  T A  GS+NN +G P T  R   D    + EL    +G I  L  +  P I  +  
Sbjct: 118 PMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +  AHL  F   E +A AK E+ E L   G   LN DD     + +++ A     +   G
Sbjct: 178 VGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRA----RVVLVG 233

Query: 252 KSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +S  A  +       + +  S+  V  QG S +V     G H   N L    I   L A 
Sbjct: 234 ESPGAHVRAEDIVLDEQARPSFTLVAPQG-SAQVSLPLHGEHHVGNALSAAAIALELGAT 292

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++     LS       R  R   A      T+++++YNANP SM+AA+  L+ ++    G
Sbjct: 293 LEQVADRLSGVRRVSAR--RMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRPG 350

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R  AVLG M E+GE     H ++  +    NI  + + G     +      S+   + E 
Sbjct: 351 RAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGA--SLEGSWGEE 408

Query: 430 ------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +D     +++ L  GDVV+ K+S     +R+   L+E
Sbjct: 409 SVLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 451


>gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 464

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 221/453 (48%), Gaps = 31/453 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +++G+SIDSR+I     F  I G   DGH+F+L AV++GA  ++ + +     G + +PV
Sbjct: 26  YIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVEEGASAILASHNPFE--GEVPVPV 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L  L  LA AAR  +KA +I ITG+ GKTT KE++   L+S  K      ++N 
Sbjct: 84  ILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTVKELVAQLLTSKGKVAKNYLNFNT 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+  ++     D DF + E+G+S+  ++  L  ++ P IA+I  + P HLS  +  + 
Sbjct: 144 QIGMSFSILAAQGDEDFWVMEVGISNPQDMEELGTILTPDIALIINVGPGHLSGLNK-QG 202

Query: 206 IASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-- 261
           +A  KA++   +  E  G + L+Y D   E+ + +S +L    +         D Q R  
Sbjct: 203 VAYHKAQLLRYMKDEGLGIVSLDYPDLVKEVKELRSGSLFFSVL---------DNQCRYY 253

Query: 262 -KWKQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL- 317
            K+    E  +    + L    ++V    +G    +++L +  I   L    D+  + L 
Sbjct: 254 SKYTGIVENGYGTYRLWLDDDIVDVTSPFLGNFGMESVLASATIAHKLGVSSDSIKQQLF 313

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               P+     R+ C    G +  ID+SYNANP SM A I    ++S   +   + VLG+
Sbjct: 314 QAILPQ----NRFSC-FTHGNWLCIDDSYNANPLSMNAVIESTYKLSDE-KKPLVYVLGE 367

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYSETMDGL 433
           M E+G+ S++ H  + + L+    S ++  G  +    + LK    + I    S   +  
Sbjct: 368 MLELGDSSEAEHEKIGKKLAQTGASIIFWKGGMIDNVLIGLKGGGFKGILEKISTEQEFQ 427

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            LF++  L +G ++V K S S      +++ ++
Sbjct: 428 SLFLKHRLDEG-IIVFKGSRSNKMEVFVDVFMK 459


>gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
 gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
          Length = 456

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 202/400 (50%), Gaps = 21/400 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLSI 83
           +GI  D+R + P   F +++G H+DG+ F   A+++G    +V+     D V        
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            ++  D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G+Y
Sbjct: 78  LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F   
Sbjct: 138 NNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFGTP 197

Query: 204 EEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQ 259
           E +  AK+E++  L E  G  F N +D         S+  G+ T+Y  G S         
Sbjct: 198 EGVVKAKSELYAYLREHDGQAFCNGEDKTL-----ISNLNGLPTVYYNGTSSPRITGSVL 252

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   +  W + Q  G+S ++    +G +   N+L  + +      D  T  +A++ 
Sbjct: 253 PTDETGLLKIEWRD-QETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTN 311

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           + P   R +       QG   ++D  YNANP+SM+ A++    +   G  R + +LGDM 
Sbjct: 312 YQPHNERSQVLP-PTAQGNRVILD-CYNANPSSMEVALNSYFTMDSQGLNRML-ILGDMN 368

Query: 380 EMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALK 415
           E+G+ ++S HI +   +  Y + +     +  G +  AL+
Sbjct: 369 ELGDAAESEHITVIRQIRSYLLRYPKMVTYFCGPNFFALQ 408


>gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
 gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
          Length = 431

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 31/430 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIGV
Sbjct: 74  DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264
           K E+++ L K   I F+++D+ +   +    + +   T   +Y  G+ + N+ +   +WK
Sbjct: 194 KGELYDFLRKKDAITFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +         G++ +V    IG +   N L  + I      +     KAL+ + P+ 
Sbjct: 254 AGKD---------GEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQN 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G 
Sbjct: 305 NRSQLKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + +   N   VWL G    A + +     +V   E +  L    Q     
Sbjct: 357 DSPAEHQKIVDYIKESNFEKVWLVGEQFAASEHSFKTYANVQ--EVIKDL----QEDKPK 410

Query: 444 GDVVVVKSSN 453
           G  +++K SN
Sbjct: 411 GYTILIKGSN 420


>gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
 gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
          Length = 464

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 173/371 (46%), Gaps = 22/371 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+RS+ P   + A++G  +DGHDF   A  +GA  ++V   +      + +P  
Sbjct: 24  IDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARGASALLVERLL-----PIELPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIG 141
            V D   AL K+A   +   +  + AITGS GKT+ K +L   L  +     K  YA  G
Sbjct: 79  LVADSELALAKIATGMQRDRETEVFAITGSNGKTSVKSLLLSILQQVAQHAHKVVYANPG 138

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P D D+ ++E+G    G+I +LT + RP  A++  IAPAHL    
Sbjct: 139 NRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARPRYALVNNIAPAHLERMG 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADF 258
            +  +A  K  I+  L   G   +N DD++      + H +G      +  +G    AD 
Sbjct: 199 SLLGVAVTKGAIYAALPADGVAVINVDDAYGRWF--EQHFVGTPARCRVLRYGLEHTADI 256

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R  +  ++ S   +        VV    G H   N L    +      D+      L+
Sbjct: 257 TARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAAASLALAAGVDLALIAAGLA 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P  GR   ++  L  G   L+D+SYNANP S+ AAI  L+     G      VLGDM
Sbjct: 317 EAQPVPGRQIAHQ--LRNGAV-LVDDSYNANPGSLAAAIDALAAAPEEG----WLVLGDM 369

Query: 379 CEMGELSQSFH 389
            E+G  +++ H
Sbjct: 370 RELGPDAEALH 380


>gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
 gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
          Length = 470

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 173/377 (45%), Gaps = 35/377 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSRS  P + F AIKG  +D HDF+   AV+  + ++V  T         ++P   V
Sbjct: 29  ISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVSAVLVTRTPQ-----DWNVPALKV 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNN 145
            D    L  LA   R R    ++A+TGS GKTT KEM+     A        A  G++NN
Sbjct: 84  ADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLTL R+       + ELGM+H GE   L  +  P +AV+      H    + +E 
Sbjct: 144 DIGLPLTLFRLHAAHQLAVVELGMNHPGETSELAKIAEPTVAVVNNAQREHQEFMATVEA 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A   A +   L   G      DD++  + +    A G + +         DF L   ++
Sbjct: 204 VALEHASVIHALSPEGVAVFPADDAYASIWRVA--ATGNRIM---------DFALNSAER 252

Query: 266 CSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +E +         + +      +EV    +G H A N L            +D   + L
Sbjct: 253 TTEAAVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNALAATSAALAAGVSLDAIRRGL 312

Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375
             F   +GR +  +  L      T+ID++YNANP SM+AAI VL S+ +P     R+ V+
Sbjct: 313 ESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAIDVLASRPAP-----RVLVM 367

Query: 376 GDMCEMGELSQSFHIDL 392
           GDM E+G+   +FH ++
Sbjct: 368 GDMGEVGDNGPAFHREI 384


>gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
 gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
          Length = 438

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 222/442 (50%), Gaps = 42/442 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R +   + FFA+KGP+++G+ +   A++KGA   VV+ +   +  +    +   +
Sbjct: 28  VQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVDEE---AYYTQPDKMMLTN 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA+  R       +AITG+ GKTTTKE+++  L+S  KT A  G+ NNHIGV
Sbjct: 85  DALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVSTVLASAFKTTATAGNLNNHIGV 144

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+ R+P D +  + E+G +H  EI     +  P   +IT I  AHL  F   E +  A
Sbjct: 145 PLTILRIPADAEMAVIEMGANHEHEIEAYCKVALPTHGIITNIGKAHLEGFGSPEGVRRA 204

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L    GT+F+  +  +   +       GI+T+ ++G++  AD+     +  ++
Sbjct: 205 KGELYDFLRNNKGTVFVCNEYPYLVDMSK-----GIQTVITYGEAA-ADY---TGQPLAD 255

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQ--------NMLMTLGIVSILTADVDTAIKALSVF 320
            + + V++ G      H GIG   +Q        N++  + +        +    A+S +
Sbjct: 256 SALLSVKVTG------HEGIGQIDSQLVGAYNFPNIMAAVAVGLHFGVPAEKIQHAISSY 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +     + QG  T+I ++YNANP+SMKAAI   + I+     +++ +LG M E
Sbjct: 310 VPSNNRSQ----VMKQGSNTIIMDAYNANPSSMKAAIDNFAGITAE---KKVLLLGGMME 362

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439
           +G+ S + H  L ++L   +   V L G   +       ++ H + Y E      +++Q 
Sbjct: 363 LGDDSVAEHQALVDLLQRTHWHAVVLVGGDFI-------KTNHPYIYQENAAAAAIWLQQ 415

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
                  +++K S S G  ++I
Sbjct: 416 QQFTDTYLLIKGSRSMGMEKVI 437


>gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
 gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
          Length = 431

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 31/430 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIGV
Sbjct: 74  DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264
           K E+++ L K   I F+++D+ +   +    + +   T   +Y  G+ + N+ +   +WK
Sbjct: 194 KGELYDFLRKKDAITFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +         G++ +V    IG +   N L  + I      +     KAL+ + P+ 
Sbjct: 254 AGKD---------GEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQN 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G 
Sbjct: 305 NRSQLKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + +   N   VWL G    A + +     +V   E +  L    Q     
Sbjct: 357 DSPAEHQKIVDYIKESNFEKVWLVGEQFAASEHSFKTYANVQ--EVIKDL----QEDKPK 410

Query: 444 GDVVVVKSSN 453
           G  +++K SN
Sbjct: 411 GYTILIKGSN 420


>gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
          Length = 952

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 179/375 (47%), Gaps = 19/375 (5%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           ++PQ  V+G+S D+R I P E F A+ G ++D H+++  A  +G G          S   
Sbjct: 509 LLPQ--VSGVSTDTRRIGPGELFVALVGENFDAHNYLDQA--EGRGACAAVVAHAVSDSK 564

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TY 137
           L   V G  D   AL ++  A R +    ++A+TGS GKTTTKEM++  L+  +      
Sbjct: 565 LPQLVLG--DTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAMLAEWQGESGRL 622

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+ NN IGVPLTL R+  +    +FELGM+H GEI  L  +  P + ++T     H 
Sbjct: 623 ATAGNLNNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQ 682

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E +A         L   G      D+ +  +  A +     + +  FG     D
Sbjct: 683 EFMHTVEAVAHENGAAIAALPDDGVAVYPGDEPYCAIWDALAEP---RRVLRFGLQPGLD 739

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
               +     + +   V       ++     G H  +N L  +         +D A++AL
Sbjct: 740 VYAEQILADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRAL 799

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S F P  GR +  +  ++ G   LID++YNANP S++ AI VL++I+    G R+ VLGD
Sbjct: 800 SRFAPVAGRMQHKK--MSDGTL-LIDDTYNANPDSVRVAIDVLARIA----GTRVLVLGD 852

Query: 378 MCEMGELSQSFHIDL 392
           M E+G+   + H ++
Sbjct: 853 MGEIGDNGPALHAEV 867



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 156/380 (41%), Gaps = 41/380 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS-IP 84
           + +DSR I P + F A  G   DG  +I  A+  GA  V+        + A+ GS   +P
Sbjct: 31  LKLDSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGSDALQAAAGSTPMLP 90

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V G+  +LG L       R  +   ++A+TG+ GKT++ + +  ALS   K    IG+  
Sbjct: 91  VTGLRALLGELADTWY-GRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGTLG 149

Query: 145 ----------------NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHI 186
                           + + V  TLA M    D G   + M  S +G  +     VR  +
Sbjct: 150 AVLPDGRTLGGDLTTPDVLTVHRTLAAM---RDAGAQAVAMEASSIGIEQGRLDGVRVAL 206

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   HL     +E   +AKA +F     T  + +N DD     L A         
Sbjct: 207 AAFTNLTRDHLDYHGTMERYEAAKARLFNWPGLTAAV-VNADDEAGRRLLATLPTGMAAM 265

Query: 247 IYSFGKSKN--ADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            YS   S +  A  + R  +  S+ Q +  V   G++ ++V   +G H   N+L+  G++
Sbjct: 266 GYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEA-QIVTRLLGAHNVSNLLLVAGVL 324

Query: 304 SILTADVDTAIKALSVFHPKEGR-------GKRYRCALNQGFFTLIDESYNANPASMKAA 356
             L        + L+   P +GR           + +  +G   ++D  Y   P ++  A
Sbjct: 325 YKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVD--YAHTPDALSRA 382

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           ++ L  ++    GR I + G
Sbjct: 383 LTALRAVAVARSGRLICLFG 402


>gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
 gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
          Length = 470

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 34/466 (7%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   + G +  DSR  A    + A  G H DGHDF+  A+  GA  V+       ++   
Sbjct: 20  PDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPAALAVGAAGVLGER----AVDGA 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           S  V  VDDV  A  ++A A   R+    I+ ITGS GKT+TK++L   L+    T A  
Sbjct: 76  SCVV--VDDVELAFAEVARAVVDRAPNLQIVGITGSSGKTSTKDLLGAVLARFAPTIAPY 133

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           GS N+ +GVPLT+ R+     + + E+G S +G I +LT +  P I ++  +  AH+  F
Sbjct: 134 GSLNSEVGVPLTVCRIDEATRYLVAEMGASGVGHIAYLTKIAPPSIGIVLNVGQAHMGEF 193

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +E IA  K E+ E L + G   LN DDS    + +++ A   K I   G  ++AD++ 
Sbjct: 194 GSVEAIARTKGELVEALPQDGVAILNVDDSRVRAMASRTQA---KVIL-VGLGEDADYRA 249

Query: 261 R--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 +     +      G++ +V    +G H   N L  +   + L      A+  + 
Sbjct: 250 TDVSIDEAGRPRYHLTCPLGEA-DVRLALVGEHQVGNSLSVIAAATSLG----LALGDVV 304

Query: 319 VFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVL 375
                 G   R+R  +++  G  TL++++YNANP SM+AA+  L+ +   G  RR IA L
Sbjct: 305 EAVAGAGAASRWRMEVSEVGGGVTLVNDAYNANPDSMRAALRALAHM---GTSRRSIAAL 361

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIHVHYSETMD 431
           G+M E+GE S   H  + ++ +   I  + +    +       + A   +  V   + +D
Sbjct: 362 GEMRELGEASHDEHTAVGQLAAELGIDRLVVVGAGAQAIAQGARTAGMTADAVTTVDDID 421

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE-----FPAIQ 472
                +   +  GDVV+ KSS   G   L + L+EE     FP  +
Sbjct: 422 AAHDVLVEQIAPGDVVLFKSSRDSGLRMLGDRLVEESGTPAFPVTE 467


>gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
 gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 183/388 (47%), Gaps = 21/388 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I +  V 
Sbjct: 16  VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAEPDNERIIL--VS 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R      +I ITG+ GKTT+KE+++  L+   K +  +G+YNN +GV
Sbjct: 74  DALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  M    +  + E+G SH  +I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLITNVGRAHLEGFGSFEGVKKT 193

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ L+     +FLN  +S  +L++  +       I ++G+   AD +      C  
Sbjct: 194 KGELYDYLKAHNALLFLN--ESNPDLVEMATER-NFDRIITYGQDDTADVKGEVISCCPF 250

Query: 268 -EQSWMEV------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + SW         Q+     EV  + IG +   NML  + I      +      AL  +
Sbjct: 251 LKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLHFGVEPHKICHALESY 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +  +   N     LI ++YNANP+SMKAAI     +       ++A+LGDM E
Sbjct: 311 TPTNNRSQLIKTKDNN----LIVDAYNANPSSMKAAIENFRLMEVKN---KMAILGDMHE 363

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G+ +   H  + + +    I +VWL G
Sbjct: 364 LGDATAEEHQRIVDQIDASKIENVWLVG 391


>gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) [imported] - Buchnera sp. (strain APS)
 gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 455

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 178/372 (47%), Gaps = 29/372 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N I ID++ I P   F A+ G  +D H FI  A++K     V   ++   +     P 
Sbjct: 23  LINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHV-----PY 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V++   AL ++A   R ++KA I+AITGS GKT+ KEM    L     T + I + NN
Sbjct: 78  IIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNGNTISTIDNLNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVP+TL ++  +  +G+ ELG S  GEI + +++ +P I +I  I  AHL  F  +  
Sbjct: 138 NIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSLLG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           ++ AK+EIF GL+   T+ +N D   F   K       I   +S  K K ++F     K 
Sbjct: 198 VSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNI-LFFSIKKKKYSNFFCSNIKI 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN--------MLMTLGIVSILTADVDTAIKAL 317
               +   +      + +    +GY    N          + + +  I    +DT I + 
Sbjct: 257 HIHGTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS- 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                     KR    + +    LID++YN+N +SM +AI VL ++     G +I V GD
Sbjct: 316 ----------KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERM----PGYKILVTGD 361

Query: 378 MCEMGELSQSFH 389
           M E+GE S  +H
Sbjct: 362 MAELGENSMMYH 373


>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
 gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
          Length = 459

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 220/474 (46%), Gaps = 41/474 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  ++++A+ G    I+ +G   G   IS D+R I  +  F A+KG  ++G+++   A Q
Sbjct: 5   SLEEIVKAVSGE---ILIKGNELGWEYISTDTRKIEEKAIFIALKGERFNGNEYTASASQ 61

Query: 63  KGAGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGA + +V  D V      I   +  V  V D   AL  LA   + + +  ++AITGS G
Sbjct: 62  KGAFICIV--DEVHFKKEEIKDYT-TVIKVKDTSEALLDLAKYYKSKLEVKVVAITGSTG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++    L +  K +   G++NN IG+PL + ++    D  + E+GMS+ GEI  +
Sbjct: 119 KTSTKDLTASVLGAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEIHKM 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P IA+IT I  +H+ N    + I  AK EI +   +   + +N +D     LK +
Sbjct: 179 AKTALPDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNLKEE 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            + L IKT    G  KN +          +    ++   G  +++     G H   N L+
Sbjct: 239 KYKL-IKT----GLGKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLL 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASM 353
            +    I     +     +        R     GK+         F ++D+SYNA+P SM
Sbjct: 294 AIACGRIFKMSFEEIKNGILDLQTTSMRLDMVEGKK---------FNIVDDSYNASPDSM 344

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KAAI VL  I      R+ AVLG M E+GE +   H ++ +     +++ + L  F    
Sbjct: 345 KAAIEVLCNIKSK---RKFAVLGTMKELGEEAYRAHREIGKYAGEKSVNLIVLGSFSKAY 401

Query: 414 LKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           ++  L  S       ++  ++  + +  ++  +L   DVV+ K+S S  F  ++
Sbjct: 402 IEGYLEGSENKNNRGNILEAKDKEEVINYLDINLNSEDVVLFKASRSEHFEEMV 455


>gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 466

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 183/385 (47%), Gaps = 39/385 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V   S D+R       FFA+KG ++D H ++ +AV +G   VVV  +    I    +P  
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVERECECEI---DVPQL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139
            V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC       
Sbjct: 82  VVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEQEVLYT 138

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN +GVP+TL R+     + + ELG +H+GEI + T + +P   ++  +A AHL  
Sbjct: 139 FGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEG 198

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADF 258
           F  +  +A AK EI+ GL++ G   +N    + +  K     +  + + SF     ++D 
Sbjct: 199 FGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK----EIDSREMQSFSYIGSDSDS 254

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTAD 309
               W +      +E+ L G    +    G        +G H   N L    +   + A 
Sbjct: 255 YADYWAED-----VELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSNALAATSLAMSVGAT 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++ A+KA  +      +G+ Y   +N      ID+SYNAN  SMK+AISVL     +   
Sbjct: 310 LE-AVKA-GLEQRSMVKGRLYPVQINDHCL-FIDDSYNANVDSMKSAISVLENYPAY--- 363

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394
            RI  +GDM E+GE S   H ++A+
Sbjct: 364 -RIFAVGDMAELGEESSKCHQEVAD 387


>gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
          Length = 452

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 175/363 (48%), Gaps = 23/363 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  AS+        
Sbjct: 24  VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----AL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143
            VDD L AL  LA A R      +  ITGSVGKTT KEML   L          A  G++
Sbjct: 80  KVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGNDAVLATAGNF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202
           NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A+      AH+   F G
Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNALRAHIGCGFDG 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +IA AK+EI++GL   G   +  +D+   + K  +  L   T        +A+  + K
Sbjct: 200 VGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFKTATLNLNTHTFGIDSGDVHAENIVLK 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              C      ++    +   VV    G H   N      +       ++   + L  F  
Sbjct: 260 PLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLGLNDVAEGLKGFSN 315

Query: 323 KEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            +G     R  +  G    TLID++YNANP SMKAAI VL+++       RI V+GDM E
Sbjct: 316 IKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGE 366

Query: 381 MGE 383
           +GE
Sbjct: 367 LGE 369


>gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
 gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
          Length = 461

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 203/447 (45%), Gaps = 44/447 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A+QKG    VV+    A      I +  V+
Sbjct: 47  VTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQKDDPRILL--VE 104

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L          G+ NNHIGV
Sbjct: 105 DCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNNHIGV 164

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G SH GEI  LTH+V P   +IT +  AHL  F   E +   
Sbjct: 165 PLTLLRLKPEHEIAVVEMGASHPGEIHMLTHIVEPDYGIITNVGKAHLEGFGSFEGVIRT 224

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS----------KNAD 257
           K E+++ L   K  ++F+  ++ +   +     A G+  I  +G++          K + 
Sbjct: 225 KGELYDYLRSRKNSSVFIQNENPYLNQI-----AEGLNCI-RYGQTEGLYVSGHVLKCSP 278

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F    W    E+   EVQ          H IG +   N+L    I      + +    AL
Sbjct: 279 FLAFAW--IGEKGLHEVQT---------HLIGTYNLDNVLAAAAIGRFFGVEEEEISLAL 327

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S + P+  R +      N     LI ++YNANP SM AA+     +       ++ +LGD
Sbjct: 328 SSYIPQNNRSQLEETPNNH----LIVDAYNANPTSMMAALENFRHVEA---AHKMVILGD 380

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S+  H  + + L   N   V L G     ++ +  +   V      D L   +
Sbjct: 381 MKELGSSSKEEHAKIVDFLDTCNFEKVILVGPEFGCIQTSYEKYPDV------DTLIDHL 434

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +S    G  ++VK SNS    RL   L
Sbjct: 435 KSDCPIGFYILVKGSNSMKLSRLPEFL 461


>gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
 gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
          Length = 1025

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 183/398 (45%), Gaps = 15/398 (3%)

Query: 72   TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            T    +     +PV  V +   A+  L   AR   +  +I +TGS GKTT   ML  AL 
Sbjct: 626  TSAPQAFADAELPVLSVRNNGDAVLALGRYARSMMRGKLIGVTGSAGKTTMVAMLAQALR 685

Query: 132  SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
               K      + N   G+   LA +  D    + EL    +G ++    L RP +AV T 
Sbjct: 686  PWGKVGTSRLNANLPHGIGWNLASIAWDTPHVVMELA---IGRMKQNAALARPDVAVFTN 742

Query: 192  IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSF 250
            IA AHL     +  +A  K+ IFEG+    T  LN D    EL + ++ A+  +  I S+
Sbjct: 743  IAAAHLEFHHDLATVARRKSAIFEGMAAGATAILNAD--MAELARVRALAMARELNIVSY 800

Query: 251  GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            G++  AD +L   K     +++E +     M       G HMA N L  L  +  L+   
Sbjct: 801  GEAPQADIRLISRKG----NFLEAETPSGRMGYHLATPGRHMAVNSLAVLATLHALSLQP 856

Query: 311  DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + AL  F P  GRG      +      LIDE+YNANPASM AA+ +L        GR
Sbjct: 857  HRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEAYNANPASMAAALELLGA---QAGGR 913

Query: 371  RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSET 429
            R+A+LG+M E+G  ++ +H DLA + +  +I  V   G  +     D  PR   +H +  
Sbjct: 914  RVAILGEMLELGPGAEGYHADLAPLATGLSIDVVHAVGPLYARFCADLPPRHRGIH-APD 972

Query: 430  MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  L       + DGD+V+VK S+  G + ++  +  E
Sbjct: 973  LATLHALWPELIRDGDIVLVKGSHGSGVHEIVRAIQAE 1010


>gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
 gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 478

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 220/466 (47%), Gaps = 62/466 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87
           + IDSR I   E F A+KG   DGH F+  A +KGA   +V+ +  +  GS +       
Sbjct: 38  VVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARY 97

Query: 88  --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
               D   A+ +LA   RL+    +I I GS GKTTTKEM    L +    +   G++NN
Sbjct: 98  LVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLRARYSVHMSEGNFNN 157

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL  +    +  + E+G++H GE+  L  +  P   ++T I   HL     ++ 
Sbjct: 158 HLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTHGMLTNIGHEHLEFLRDLDG 217

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +A+A+  ++  ++K+ G +F+N +DS     +    A GI +   +G +           
Sbjct: 218 VANAETALYRYVQKSGGVVFVNREDS-----RLTEAAAGIPSTVGYGIALEG-------- 264

Query: 265 QCSEQSWME-VQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-F 320
              E  W E +++   G+++  +    G     N  +TLG       +V  A+ A +V F
Sbjct: 265 ---EGFWAEDIRMDNLGRALFTLCSSAG-----NAPVTLGFAG--RHNVSNAVAAATVGF 314

Query: 321 H----------------PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           H                P+EG  KR       G  T+++++YNANP S++ A+ +L ++ 
Sbjct: 315 HFGLTQEEIAGGLERLKPEEGW-KRLEFQ-RAGGITIVNDTYNANPDSVRNALDLLCELP 372

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH 423
               G+R+AV+GDM E+G +S   H    E +  Y  S   L  F+    + AL  R+  
Sbjct: 373 V--TGKRVAVIGDMLELGGVSSPEH----EEIGRYAASLDGLDAFYTFGEQAALCCRTAG 426

Query: 424 V----HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +    H+ +  + L   +  SL  GDV+++K S      R+   L+
Sbjct: 427 MKCAGHFMDHGE-LQHLLHESLSPGDVLLLKGSRGMKLERVAEGLM 471


>gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 458

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 178/372 (47%), Gaps = 29/372 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N I ID++ I P   F A+ G  +D H FI  A++K     V   ++   +     P 
Sbjct: 23  LINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHV-----PY 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V++   AL ++A   R ++KA I+AITGS GKT+ KEM    L     T + I + NN
Sbjct: 78  IIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNGNTISTIDNLNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVP+TL ++  +  +G+ ELG S  GEI + +++ +P I +I  I  AHL  F  +  
Sbjct: 138 NIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSLLG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           ++ AK+EIF GL+   T+ +N D   F   K       I   +S  K K ++F     K 
Sbjct: 198 VSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNI-LFFSIKKKKYSNFFCSNIKI 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN--------MLMTLGIVSILTADVDTAIKAL 317
               +   +      + +    +GY    N          + + +  I    +DT I + 
Sbjct: 257 HIHGTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS- 315

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                     KR    + +    LID++YN+N +SM +AI VL ++     G +I V GD
Sbjct: 316 ----------KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERM----PGYKILVTGD 361

Query: 378 MCEMGELSQSFH 389
           M E+GE S  +H
Sbjct: 362 MAELGENSMMYH 373


>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 453

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 183/389 (47%), Gaps = 14/389 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL + +      I     + GI+IDSR +   + F    G + DGH+FI  A +KGA   
Sbjct: 7   DLEKILNAKKANITSNVEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESAFEKGAAAS 66

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +   D   S  +    +  V+D   A+  LA        A  IAITGS GKTTTK+++T 
Sbjct: 67  LSLKDDFVSENN----IIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKTTTKDIITS 122

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS+  K +   G++NN +GVP+T+   P D +  + E+G    G++ FL+ LV P   V
Sbjct: 123 VLSTKYKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADDFGQLDFLSKLVEPDYTV 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  +H+  F   E IA AK EI  G++K G    N D+   + L   S         
Sbjct: 183 ITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGDEVLIKTLVDSSEINAT---- 238

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S G++   D  L  +    ++  ++ +L     +      G H   N++    I S +  
Sbjct: 239 SCGENSYNDIILESYTITRDK--IDFKLNISDEQYFTKLKGKHNLYNIMFATAIASKIGL 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   KA+   +  E  G R +    +    +I+++YNA+P SMKA + V+S       
Sbjct: 297 TNEEIHKAIE--NTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVVSSYDDF-- 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             +  VLG M E+G    ++H ++ E +S
Sbjct: 353 DYKTLVLGSMFELGPNEVNYHGEVGEYIS 381


>gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
 gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
          Length = 430

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 206/447 (46%), Gaps = 32/447 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            NG++ DSR       F A+KG  ++G+ F   ++ +G    VV+    AS  +  I + 
Sbjct: 13  CNGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEPQYASPENPYILL- 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++ L  L +LA   R +    ++ +TG+ GKTTTKE++   L          G++NNH
Sbjct: 72  -VENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQGNFNNH 130

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+  + +  + E+G +H GEI+ L H+  P   +IT +  AHL  F   E +
Sbjct: 131 IGVPLTLLRLKPEHEVAVIEMGANHPGEIKTLVHIAEPDCGIITNVGKAHLEGFGSFEGV 190

Query: 207 ASAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              K E+++ L + G  TIF+  ++     +     A G+  +  +G++   D       
Sbjct: 191 IRTKGELYDYLREKGNATIFIQNENPHLNKI-----AEGLNCV-RYGQTSGLDVS-GTVL 243

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            CS    +     G S EV  H IG +   N L  + I      +      ALS + P+ 
Sbjct: 244 SCSPFLHLGWTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFGVEDTQICHALSSYVPQN 303

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   N    TLI ++YNANP SM AA+    Q+       ++A+LGDM E+GE 
Sbjct: 304 NRSQLVQTESN----TLIVDAYNANPTSMMAALVNFRQMEAE---HKVAILGDMKELGEG 356

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S+  H  + + L+      V L G     L  +     +V   E M      + +  V  
Sbjct: 357 SREEHQKVVDFLNECQFERVILVGPEFAGLSASFEHYENVKEVEAM------LAAHPVQH 410

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFPAI 471
             V++K SNS        + L E PA 
Sbjct: 411 CCVLIKGSNS--------MKLSELPAC 429


>gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 474

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 198/396 (50%), Gaps = 34/396 (8%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WTF  +  A+  G S+   PQ    GIS D+R IA  + F A++G  +D HDF+  A   
Sbjct: 26  WTFERVAAALGTGPSM---PQPLA-GISTDTRRIARGDVFVALRGDRFDAHDFLATAKDA 81

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV +D   ++G L +P + V D L AL +LA   R      +IA+ GS GKT+TK
Sbjct: 82  GAAAFVV-SDATRAVG-LGVPTYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTK 139

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L  ALS   + +A  G+ NN IGVPLTL  +P   D  + ELG +  GE+  L  +  
Sbjct: 140 ELLKAALSGTFEVHATTGNLNNLIGVPLTLLAIPPHADIAVVELGTNAPGEVATLRAMSA 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AV+T+I   HL     +  +   + ++F G+        + + S     +A++    
Sbjct: 200 PDVAVLTSIGEEHLEGLGDLAGVLREECDVFPGVRLAIIPVAHPEVSPMASERAEA---- 255

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMT 299
              + + G + +AD    +W    E + W +V       + VH  +   G H A N ++ 
Sbjct: 256 ---VVTAGLT-DADVAPEQWGLDDEGRPWFDV-------DGVHFTLPLRGAHQAANAMLA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +         +++A   ++       RG         G  T+I+++YNANP SM+AA+++
Sbjct: 305 VAAARACGVPLESAAAGMAAMPVPNMRGVWETI----GQTTVINDAYNANPPSMRAALAL 360

Query: 360 LSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAE 394
           L ++   GEGR R+A LG M E+G  +   H D+A 
Sbjct: 361 LDRV---GEGRQRVAFLGTMRELGAQADVQHDDIAR 393


>gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 446

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 212/452 (46%), Gaps = 38/452 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G++F   A++KG    V+  D              V+
Sbjct: 16  VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVI--DQKEYQIQQDERYILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    II ITG+ GKTTTKE+L   L+     +   G++NN IGV
Sbjct: 74  DCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  +V P  A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265
           KAE+++ +E     G +F+N D+   + +  ++H   +  I YS  +     +Q    K 
Sbjct: 194 KAELYDYMEVNKPNGKVFINQDNPHLQEM-FQAHCPHVHRISYSQTQQTGVSYQ---GKI 249

Query: 266 CSEQSWMEVQLQ-----------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           CS   ++  Q +            +  EV  H +G +   N+L  + I   L        
Sbjct: 250 CSNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAISIGHYLGVQPHEIN 309

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRI 372
            AL+ + P   R +      N     LI ++YNANP SM+AA+   +  Q++P     ++
Sbjct: 310 HALTHYTPSNNRSQLEVTKHN----NLIVDAYNANPTSMEAALVNFAQMQVAP-----KM 360

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           A+LGDM E+GE+S + H  +  +L+   I  +WL G           +       + ++ 
Sbjct: 361 AILGDMRELGEVSVAEHQKIINLLNTLPIQQIWLVGEEFGKTTTTFQK------YKNIEE 414

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   I+     G  +++K SN    ++L  LL
Sbjct: 415 VKETIRQQQPQGFYILIKGSNGIKLFQLPELL 446


>gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 464

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 172/371 (46%), Gaps = 22/371 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+RS+ P   + A++G  +DGHDF   A  +GA  ++V   +      + +P  
Sbjct: 24  IDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLL-----PIELPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIG 141
            V D   AL K+A   +      + AITGS GKT+ K +L   L  +     K  YA  G
Sbjct: 79  LVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVKSLLLSILQQVAQHAHKVVYANPG 138

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P D D+ ++E+G    G+I +LT + RP  A++  IAPAHL    
Sbjct: 139 NRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARPRYALVNNIAPAHLERMG 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADF 258
            +  +A  K  I+  L   G   +N DD++      + H +G      +  +G    AD 
Sbjct: 199 SLLGVAVTKGAIYAALPADGVAVINVDDAYGRWF--EQHFVGTPARCRVLRYGLEHTADI 256

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R  +  ++ +   +        VV    G H   N L    +      D+      L+
Sbjct: 257 TARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNALAAASLALAAGVDLALIAAGLA 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P  GR   ++  L  G   L+D+SYNANP S+ AAI  L+     G      VLGDM
Sbjct: 317 EAQPVPGRQIAHQ--LRNG-AVLVDDSYNANPGSLAAAIDALAAAPEEG----WLVLGDM 369

Query: 379 CEMGELSQSFH 389
            E+G  +++ H
Sbjct: 370 RELGPDAEALH 380


>gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. ND132]
 gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 198/455 (43%), Gaps = 19/455 (4%)

Query: 21  IVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           +  +GF    V  +  DSR++ P + FF I G ++DGH+F   A  KGA  VV +     
Sbjct: 15  LADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALAAAKGACAVVASR---- 70

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            IG +  PV  V D   AL +LA   R    A ++A+TG+ GKTT KEML    S    T
Sbjct: 71  MIGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKTTVKEMLFAVASQKFAT 130

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                ++NN IG+P ++ +   D +  I ELG+S  G++  L  +  P +A+IT + P H
Sbjct: 131 AKNYRNFNNQIGLPTSMLKASADQELWIMELGISRRGDMEELAPVASPDLAIITNVGPGH 190

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L        +ASAK  +   L + G   ++ D  +  L  A    +     +S      +
Sbjct: 191 LEGLGNEAGVASAKTALLRYLRQGGRAVISRD--YPLLWNAALELVDAPVGFSGRDDAES 248

Query: 257 DFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DF         + +    ++      E+     G H A+N+         L    D  + 
Sbjct: 249 DFSAAFLGALPDGRGRFRLRTPDGDGELTAPFCGRHYAENLACVAAAAHCLGLTRDDVVG 308

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +          +R+ C    G  T+ID++YNANP SM  A+    +++  GE   + VL
Sbjct: 309 GVQAMAADP---QRF-CRKIGGGITVIDDTYNANPLSMANALRTARELA--GERPLVLVL 362

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G  +   H +L  V+     + V+  G H L ++        +  +  +D    
Sbjct: 363 GDMRELGAEAVLRHEELGRVIRETAPAMVFYKGDHFLDVERGF--GGFMRRAGDVDEFLE 420

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +   +    V+VK S S G     N L  E  A
Sbjct: 421 AWRELCISEGAVLVKGSRSLGMELYANALCREVNA 455


>gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
 gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
          Length = 452

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 201/440 (45%), Gaps = 26/440 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+ IDSR +     +  I G   DGH F    ++ GA + +   D V        PV 
Sbjct: 27  IHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQTIEDGALISLWQKDHVPY---PDFPVI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L A+  L+ A        +I +TGS GKT+ K+ML    S  KKT    G+ N+ 
Sbjct: 84  LVDDTLRAMQDLSKAYLDELHPLVIGVTGSNGKTSCKDMLYSIFSQEKKTQKTQGNRNSE 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+     D++  I E+GM + GEI  LT + +P I+VIT+I  AH+ N  G  +I
Sbjct: 144 IGLPLTIFDFDEDIEVAILEMGMENKGEITQLTSIAQPDISVITSIGSAHMENLGGKLQI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRK 262
           A AK EI EG ++ G    NY+    + +         K + SFG+    S  +D +  K
Sbjct: 204 AQAKCEILEGTKENGLFLYNYESKEIQEVLCTLDTEN-KNVVSFGQGGDVSITSDIEYDK 262

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + + ++  +  ++        G   A N L  + I        ++ +  L     
Sbjct: 263 EGIVFKCNILDAPVHLRAF-------GDFQAMNALPCIYIAKACHLKEESILNGLKNLEM 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            + R +    ++   +  ++D++Y +NP S KAAI  L ++  +   + IA++ DM ++G
Sbjct: 316 TKMRTQLI--SVKNAY--ILDDTYKSNPESAKAAIDTLMELPAN---KHIAIISDMLDLG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
              +  H D+        +  ++ +G     L        +  + ET D ++   +  L 
Sbjct: 369 SEEKQLHYDVGVYAKEKGVDELYCTG----PLSKETADGFNGKWYETKDEIYEACKPLLD 424

Query: 443 DGDVVVVKSSNSCGFYRLIN 462
              ++++K S +     L++
Sbjct: 425 KDCIIMIKGSRAMKMDTLVD 444


>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
 gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
          Length = 470

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 208/460 (45%), Gaps = 33/460 (7%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V+G + IDSR  AP   F A++G   DGHDF   AV+ GA  V+ +      + + 
Sbjct: 23  PTDTVDGPVVIDSREAAPGSLFVALRGSRVDGHDFAEAAVRAGATAVLCSR----PVDAP 78

Query: 82  SIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            + V G DD + A       AV A L   A II +TGS GKTTTK++L   L  I  T A
Sbjct: 79  HLLVDGGDDAVVAALAKLARAVVAEL-PDADIIGVTGSSGKTTTKDLLAQTLQRIGPTVA 137

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             GS+NN IG PLT+ R      F   E+    +G I  L  +  P I V+  +  AH+ 
Sbjct: 138 PPGSFNNEIGHPLTVLRADQTTRFIALEVAARGVGHIAHLCQIAPPRIGVVLNVGSAHMG 197

Query: 199 NFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
            F   + IA AK E+ E L    + G   LN DD     + +++ A     + S+G + +
Sbjct: 198 EFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDDAVIGMASRTAA----RVVSYGLAPD 253

Query: 256 ADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD +          +    + +   +  V    +G H   N L    ++  L   V    
Sbjct: 254 ADVRAEGIALDERGRPRFTLAIGEDTAPVSLRLVGTHQVHNALAVAAVLRELGEPVTAIA 313

Query: 315 KALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR- 371
            ALS   P      R+R  + +     T+++++YNANP SM AA+  L+ ++    GRR 
Sbjct: 314 AALSEAGPV----SRWRMEVTERPDGVTIVNDAYNANPESMSAALRTLATLA---SGRRA 366

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-- 429
            AVLG M E+G   ++ H  +  +++   +  +   G    ++ D    S+     ET  
Sbjct: 367 FAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITVGEQAASIADGAA-SVADWKGETVT 425

Query: 430 ---MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +      ++  L   D+V++K S   G  ++   L++
Sbjct: 426 VADVTEAVAVLKERLRPKDIVMLKGSRVAGLEQVAEQLID 465


>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
 gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
          Length = 460

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 211/449 (46%), Gaps = 43/449 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85
           +  DSR +     F  + G  +DGH F++ A  + A   VV T       + S PV    
Sbjct: 30  VCTDSRQLVAGAFFVPLVGERFDGHRFLVEAAARPAQAAVVAT-------AWSDPVPPGL 82

Query: 86  --FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             + V+D L A   LA A R +    ++A+TGS GKTTT+E++  AL+ +    A  G+ 
Sbjct: 83  LHWRVNDTLEAYQMLARAHRRQLPCPVVAVTGSAGKTTTRELIRAALAPLGVVQASSGNN 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLT+  +  +    + E+GM   GEI  L+    P IAVIT I  AH+      
Sbjct: 143 NNDVGVPLTVLGVGPEHGAAVIEMGMRGPGEIARLSRCAEPQIAVITNIGTAHIGRLGSR 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA+AK EI   L   G + +   D   E   A+  A  ++ +   G +  +   +R  
Sbjct: 203 EAIAAAKCEITASLAADGLVVIPAGDPLLEAALAQCWAGRVRRVALEGDALES---VRPE 259

Query: 264 KQCSEQSWMEV-----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   ++V     +L+G ++ +     G H A+N+L+ L +   L   +   ++ L 
Sbjct: 260 APVDRLGVVDVCAGVLRLEGLAIRLPLE--GRHNARNLLLALTVAQELGVPL-AQLQDLK 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V  P  GR +R   A  Q    ++DE+YNA+P ++ AA+ +L+    H  GRR AVLG M
Sbjct: 317 VAVPG-GRNRRIELAGIQ----VLDETYNASPEAVFAALELLA----HQAGRRFAVLGAM 367

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSE-TMDG 432
            E+G+ S + H  +AE      +  + L         +      LPR   V   E  +  
Sbjct: 368 LELGDQSVALHRQVAERAVACGLDGLVLVMAGAEADAMAEAAAPLPRLQRVDTPEQAVPV 427

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           L  ++QS    GD +++K+S      RL+
Sbjct: 428 LAAWLQS----GDTLLLKASRGVALERLL 452


>gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase,
           D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp.
           ORS278]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 147/467 (31%), Positives = 211/467 (45%), Gaps = 50/467 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-----------PHYD 52
           LWT  +  +A+     G  P+  ++ ++ DSR++ P   F A+ G              D
Sbjct: 5   LWTVAEAARAL--GLAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRD 62

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATII 111
           G +F  +A Q GA  ++V       I  +++P   V D L   L  LA AAR R    +I
Sbjct: 63  GWEFAANAEQAGAVAMIVPH----RIEGVTVPQLVVTDTLIDGLWALARAARSRFHGPVI 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            +TGS GKT+TKE +    ++     A   S+NN  GVPLTL          + E+GM+ 
Sbjct: 119 GLTGSAGKTSTKEFI----AAYPGASASPSSFNNFWGVPLTLCNADPSASVWVVEMGMNQ 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GEI  LT L +P +A++  + P HL     +E I   K  I  GL   G + L  D + 
Sbjct: 175 KGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRQEKVSIARGLPSGGILVLPADLAA 234

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSW-MEVQLQGKSMEVVHHGIG 289
            E           KTI  FG     D ++R+    +  +SW +   + G S+        
Sbjct: 235 PEWSG--------KTIR-FG----GDAEVRELSHTARGESWDVTADIAGCSVNFALTPGA 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  L  V+    D       L       GRG         G   LID+S+N N
Sbjct: 282 PHRLHNALAALASVAAAGLDPALLAPELGEVGIMTGRGVEQTV----GDIVLIDDSFNGN 337

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PASM AA+  L Q  P   GRRIAV+GDM E+G+ + ++H  +  V  L  I  V+  G 
Sbjct: 338 PASMAAALDGL-QARPV-RGRRIAVIGDMLELGDEAPAYHAKM--VGHLAGIDGVFCVGP 393

Query: 410 HVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSN 453
            +  L +ALP+   + + E   T+D     + + L  GDVVVVK S 
Sbjct: 394 LMRHLFEALPQGRRLGWHEDPVTLDP--KQVAALLAPGDVVVVKGSK 438


>gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
 gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
          Length = 436

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 213/448 (47%), Gaps = 41/448 (9%)

Query: 30  ISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           I+ DSR I P+++ F A++G ++DG+ F   A++KG    +V+             +  V
Sbjct: 17  ITTDSR-ICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQKYQKPDDSRYIL--V 73

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L    +LA   R R    II ITG+ GKTTTKE+++  L          G++NN +G
Sbjct: 74  DNCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGNFNNDVG 133

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+       + E+G SH G+I+ L  +V P   +IT +  AHL  F   E +  
Sbjct: 134 VPKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNVGKAHLQGFGSFEGVIR 193

Query: 209 AKAEIFEGLE-KTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWK 264
            K E+++ L  K G   +F+N D+ +   L   S  L   T+  +GK  + +  ++ +  
Sbjct: 194 TKGELYDYLRAKQGGNKVFINADNPY---LMNISQGL---TLIKYGKRDDCELSVKGEVT 247

Query: 265 QCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318
            CS   +  W   Q  G   EV    IG +   NML    I     I  AD+D   +ALS
Sbjct: 248 GCSPFLDFRWYNTQ-AGHWNEVHTRMIGAYNIDNMLAAACIGLHFGISEADID---EALS 303

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLG 376
            + P   R +      N+    LI ++YNANP SM AAI       +SP     +IA+LG
Sbjct: 304 KYTPSNNRSQLTVTNDNK----LIVDAYNANPTSMHAAIENFKAMHVSP-----KIAILG 354

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G  S+  H  +A+ L   +  +VWL G      K    R  H      ++ +   
Sbjct: 355 DMRELGNASKEEHQRIADELKTADFDNVWLVGEEFYNTKSGF-RKFH-----NIEEVKTA 408

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +Q++   G  +++K SN     +L  LL
Sbjct: 409 LQTNKPKGCYILIKGSNGLHLSQLPELL 436


>gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 474

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 207/467 (44%), Gaps = 31/467 (6%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           Q H I          + IDSR +     F A  G H DGHD+   AV             
Sbjct: 16  QAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAERAVAA-------GAVA 68

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V +   + +P   VDDV  AL  LA A   R    ++A+TGS GKT+TK+++   L    
Sbjct: 69  VLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLDRHA 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T    GS NN IG+PLT  R   +    + E+G   +G IR+LT L  P I ++  +  
Sbjct: 129 PTVWTPGSLNNEIGLPLTALRASDETRHLVLEMGARGIGHIRYLTGLTPPRIGLVLNVGT 188

Query: 195 AHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           AH+  F G E+IA AK E+ E L   E  G   LN DD     + +++ A     +  FG
Sbjct: 189 AHIGEFGGREQIAEAKGELVEALPAAEDGGVAVLNADDPLVRAMASRTKA----RVTLFG 244

Query: 252 KSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           ++  A  +    +     Q    +       +V     G H   N L    +   L   V
Sbjct: 245 EADEAAVRAENVRLTENGQPSFRLHTPTGCSDVTLRLYGEHHVSNALAAAAVAHELGMPV 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +    ALS    + G   R+R  + +     T+++++YNANP SM+AA+  L+ +    +
Sbjct: 305 EEIATALS----EAGTLSRWRMEVTERPDGVTIVNDAYNANPESMRAALRALAAMGRAAQ 360

Query: 369 GRRI---AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419
            R     AVLG M E+G+ S   H  +  +    N+S +   G        + A  +   
Sbjct: 361 ARGARTWAVLGKMAELGDASLVEHDAVGRLAVRLNVSKLVAVGDREASWLQLGAYNEGSW 420

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               VH S+    + L ++S L  GDVV+VK+S S G  ++   LL+
Sbjct: 421 GEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEQVALALLD 466


>gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 459

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 178/372 (47%), Gaps = 41/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V+ I  DSR I   + FFA+ G  +DGHDF    +  GA   VV+ +  A + G+L +  
Sbjct: 28  VSRIVTDSRDIRAGDVFFALDGERFDGHDFAEDVLAAGAAAAVVSREDCAGLRGALQVA- 86

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
               D L AL  LA A R      +  ITGS GKTT KEML   L      +   A  G+
Sbjct: 87  ----DTLEALQTLAQAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGEEAVLATAGN 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201
            NNHIG+PLTL ++     + + E+GM+H GE+  LT + RP  A++     AH+   F 
Sbjct: 143 LNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTRIARPDAALVNNALRAHVGCGFD 202

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADF 258
           G  +IA AK+EI++GL   G   +  +D+  E+ +  S A   +T   FG  K   +A  
Sbjct: 203 GTADIARAKSEIYQGLGADGLALIPCEDANAEIFQTASAAHKQQT---FGVDKGGVHARN 259

Query: 259 QLRKWKQC-------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            + K   C       SE + + + + G+                 L TL  VS       
Sbjct: 260 IVLKPLSCAFDLVCGSETASVSLPVPGRHNVHNAVAAAALALAAGL-TLNEVS------- 311

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                L  F   +GR K  R        TLID++YNANP SMKAAI VL+ +       R
Sbjct: 312 ---DGLKDFSNIKGRLKVKRGIKGA---TLIDDTYNANPDSMKAAIDVLAALP----APR 361

Query: 372 IAVLGDMCEMGE 383
           + V+GDM E+GE
Sbjct: 362 VFVMGDMGELGE 373


>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
 gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
          Length = 453

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 184/393 (46%), Gaps = 14/393 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   DL Q +    I IV    + GI+IDSR +   + F    G + DGH++I  A +KG
Sbjct: 3   YLVKDLEQILNAKKINIVENKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   +   S  +    +  V+D   A+  LA        A IIAITGS GKTTTK+
Sbjct: 63  AAASLSLKEDFTSDNN----IIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L +  K +   G++NN +GVP+T+   P D +  + E+G    G++ FL+ LV P
Sbjct: 119 IITGLLETKFKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADGFGQLDFLSKLVEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              VIT I  +H+  F   E IA AK EI  G++K G    N D+   + L  KS+ +G 
Sbjct: 179 DYTVITNIGESHIEFFGSREGIAKAKFEITNGMKKDGFFVYNGDEVLLKDLVDKSN-IGA 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S G++   +  L  +    +    ++ L  +         G H   N++    I  
Sbjct: 238 T---SCGENDYNNIILENYTITRDHIDFKLNLSDEKFTTKLK--GKHNLFNIMFATAIAE 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   KA+      E    R           +I+++YNA+P SMKA++ V+S   
Sbjct: 293 KLGLSIDEIRKAIE--KTSEITHMRLESIPYGKDSLIINDAYNASPTSMKASVDVVSGFD 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                 +  VLG M E+G     +H ++ E +S
Sbjct: 351 DF--DYKTLVLGSMFELGSKEVQYHSEVGEYIS 381


>gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
 gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
          Length = 458

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 186/390 (47%), Gaps = 26/390 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A+ KG    V++           I +  VD
Sbjct: 34  VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEKEYDDEADDRIIL--VD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTTTKE+L+  LS         G++NN +GV
Sbjct: 92  DCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNNDVGV 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    D  + E+G SH+G+I+ L   V P   +IT +  AHL  F   E +  A
Sbjct: 152 PKTLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNVGRAHLQGFGSFEGVMQA 211

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----------F 258
           K E+++ L+     +FLN  +   E L   +H   ++ I S+G+   A           F
Sbjct: 212 KGELYDYLKACHAPVFLNTSN---EHLVDMAHQRRLERIISYGQDDGAQVWGEVMSCDPF 268

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              +W     +      +Q    EV  H +G +   N+L  + +        +   +AL 
Sbjct: 269 LKLQWGASHAEHHSPTSMQ----EVSTHLVGAYNLDNVLAAITVGLHFGVSEEQIRQALE 324

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +    + N+    LI ++YNANP SM AAI    ++S      R+A+LGDM
Sbjct: 325 SYTPSNNRSQFVETSRNR----LIIDAYNANPTSMAAAIDNFERMSM--TQPRMAILGDM 378

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+GE+S+  H  +A+ L   +I  +WL G
Sbjct: 379 RELGEVSEEEHQKIADSLKASDIDTIWLVG 408


>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
 gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
          Length = 468

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 183/411 (44%), Gaps = 19/411 (4%)

Query: 4   LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T HD    I G + IG     F   +S DSR++   + F A+KG  +D HDF+     
Sbjct: 3   MLTLHDAAALIPGATVIGDGSVAFAR-VSTDSRTVGEGDLFVALKGERFDAHDFLAEVAA 61

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +GA     +  +V+  G L  +P     D   AL  LA   R R    ++A+TGS GKTT
Sbjct: 62  RGA-----SAALVSRAGVLPGLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTT 116

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++        +  G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 117 VKEMIASVFAAAVGQDARLSTAGNFNNDIGLPLTLLRLAPAHRLAVIELGMNHPGETGTL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P IA++      H    + +E +A   A +   L   G      DD +  + +  
Sbjct: 177 ARIAAPTIALVNNAQREHQEFMATVEAVALEHASVIHALGPDGVAVFPADDRYAGIWRVA 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +       I  F  + +           ++   + +      +EV    +G H A+N L 
Sbjct: 237 ATG---NRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
                     + D     L  F P +GR +  R +L       LID++YNANP SM+AAI
Sbjct: 294 ATAAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAAI 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            VL+Q +      R+ V+G+M E+G+   +FH ++        I  ++ +G
Sbjct: 354 DVLAQCA----APRVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATG 400


>gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 464

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 183/385 (47%), Gaps = 41/385 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V   S D+R       FFA+KG ++D H ++ +AV +G   VVV  +       + +P  
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVEREC-----EIDVPQL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139
            V D   AL +LA   + +     +A+TGS GKTT KEM    L   +K  AC       
Sbjct: 80  VVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEQEVLYT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN +GVP+TL R+     + + ELG +H+GEI + T + +P   ++  +A AHL  
Sbjct: 137 FGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEG 196

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADF 258
           F  +  +A AK EI+ GL++ G   +N    + +  K     +  + + SF     ++D 
Sbjct: 197 FGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK----EIDSREMQSFSYIGSDSDS 252

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTAD 309
               W +      +E+ L G    +    G        +G H   N L    +   + A 
Sbjct: 253 YADYWAED-----VELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSNALAATSLAMSVGAT 307

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++ A+KA  +      +G+ Y   +N      ID+SYNAN  SMK+AISVL     +   
Sbjct: 308 LE-AVKA-GLEQRSMVKGRLYPVQINDHCL-FIDDSYNANVDSMKSAISVLENYPAY--- 361

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394
            RI  +GDM E+GE S   H ++A+
Sbjct: 362 -RIFAVGDMAELGEESSKCHQEVAD 385


>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 169/345 (48%), Gaps = 27/345 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPV 85
           + G+  DSR I     F  + G  +DGH +    ++ GAG  +   D   A  G++ +  
Sbjct: 8   IQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPAGAVIV-- 65

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD L AL  LA A        ++ ITGS GKTTTK+M+   LS+  K +   G++NN
Sbjct: 66  --VDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYKVHKTGGNFNN 123

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  MP D +  + E+GMS   EI  L+ + RP +AVIT I  AHL       E
Sbjct: 124 HIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQLGSRHE 183

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFG-KSKNADF--- 258
           IA AK EI  G++  G +  + D+    ++  ++  +   G+ T ++FG    N D+   
Sbjct: 184 IARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGT-FTFGLDHSNDDYPTG 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDTAIK 315
            +   K     S +  + +G  + +    +G H   N L  L +     I   ++ T + 
Sbjct: 243 MMFHSKGIIFTSLLHPE-EGLDLPL----LGQHNVINCLAALAVARHFGITEENIRTGLT 297

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            L +       G R    +     T+++++YNA+P SMKAAI  L
Sbjct: 298 GLHL------TGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDAL 336


>gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 457

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 209/450 (46%), Gaps = 37/450 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ISIDSR+    + F AIKG ++DGH FI   + KG   VV+   M   + S + P + V
Sbjct: 30  NISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKGVKSVVIKKGMQRLLPS-NFPYWAV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   A  KLA+  R +    I+AITGSVGKTTTKEM+   L+ + +      ++NN IG
Sbjct: 89  NDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNEIG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      + I  
Sbjct: 149 VGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITH 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE-LLKA--KSHALGIKTIYSFGKSK--NADFQLRKW 263
           AK EI + L   G + +  +D F E  LK   K   + +K +    + +    D  LR +
Sbjct: 209 AKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGF 268

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S+++   + ++  + E+     G+H A N L    +   L  D  +  K    F   
Sbjct: 269 YNPSKKT---ILIEENTFEISLE--GFHNASNFLFAYAVSKELGIDFASFNKF--DFVSF 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR K  +        T+ DESYNA+P S+KA I  L +  P     +  + G M E+G+
Sbjct: 322 GGRNKILKSLKT----TIYDESYNASPESVKACIKNLLE-KPRN---KFFIFGSMQELGK 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF------- 436
            S+ +H    E+ +L N S +       L + +      + +Y +      +        
Sbjct: 374 ESEKYH---KEIFNLINNSDIE----KCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVP 426

Query: 437 --IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             I  S   GD +++K S      ++I L+
Sbjct: 427 QEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
 gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
          Length = 519

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 185/396 (46%), Gaps = 26/396 (6%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +IP   VDD   AL +LA   R ++  +++ ITGS GKTT KEM+   LS    T    G
Sbjct: 139 TIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGSNGKTTVKEMVAAILSVNADTLFTQG 198

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IGVPLTL R+     + + E+G +H GEI + +   +  +A+IT +  AH+  F 
Sbjct: 199 NLNNDIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTSQYAQADVAIITNVGAAHIEGFG 258

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            I+ +A AK EI + L++ G   LN DD++F+  K+ +   G + + SFG  + AD    
Sbjct: 259 SIDGVAKAKGEIIQTLKQDGVAVLNRDDAYFDYWKSIA---GTRKVISFGIDERADVTAH 315

Query: 262 KWK----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             K      +  +  E+      + V     G H   N L        L  D+    + L
Sbjct: 316 SVKTEIINHAFATTFELVTAKGELTVKLKLAGRHNVVNALAAATACLALDTDLQQIKQGL 375

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               P  GR +     L      +ID++YNAN AS+KA + VL+      +G+R  VLG 
Sbjct: 376 ESVKPVTGRLQPLVSRLGN---IVIDDTYNANSASLKAGLDVLANC----DGKRWLVLGA 428

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDG 432
             E+G  S   H  + E++    +         +LA+      ++ +      + +T + 
Sbjct: 429 FGELGPDSPKIHEQMGELIKSSGV-------VRLLAVGSDAGNTVKIFGEGATFFDTQND 481

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L   ++  L   + +++K S +     ++  L+E F
Sbjct: 482 LIEMLKQELKGDEAILIKGSRAQRMENVVAALVENF 517



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 7  FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++   +QG  +G      ++ +SID+R+I P + + AIKG ++DG++F+  A Q GA 
Sbjct: 5  LSEIAACVQGKLVG--EDVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEAEQAGAV 62

Query: 67 LVVVNTDMVAS 77
            +V+  + A+
Sbjct: 63 AAIVHQGITAT 73


>gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus]
          Length = 463

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 187/395 (47%), Gaps = 53/395 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P   F A  G   DGHDF    V  GA  V+   D          P   V+
Sbjct: 30  VEYDSRKVVPGGLFVAFPGERVDGHDFASAVVAAGAAGVLGTRDT-------GEPGVVVE 82

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D L A+  LA  V ARL  + T++ +TGS GKTTTK+ +   LS +  T A  GS NN +
Sbjct: 83  DSLRAVATLAHEVVARL-PELTVVGLTGSSGKTTTKDYIGQLLSRLGPTVALPGSLNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G P T+ +   D  F + E+G   +G IR LT + RP I V+  I  AH+  F  +E  A
Sbjct: 142 GFPYTVLQAGADTRFLVLEMGARGVGHIRHLTGIARPSIGVVLNIGAAHIGEFGSVEGTA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK E+ E L +TG   LN DD+    + +++ A     + + G++  A  QLR      
Sbjct: 202 LAKGELVEALPQTGVAVLNADDALVSAMASRTGA----RVVTVGEAAGA--QLRA----- 250

Query: 268 EQSWMEVQLQ--GKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTA-----DV 310
               ++V L   G++  V+ HG           G H   N L    +   LTA     D+
Sbjct: 251 ----VDVTLDPAGRASYVLEHGERRGTVRLRVAGRHQVANSLSAAAVA--LTAGLAFDDL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            TA+  +S+        +R          T+ID+SYNANP+S  AA+  L+ +S    GR
Sbjct: 305 VTALSEMSMVSD-----RRMDVFERPDGVTVIDDSYNANPSSTAAALRALAAMSA---GR 356

Query: 371 R-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           R  AVLG M E+GE   S H ++  + +   +  +
Sbjct: 357 RTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRL 391


>gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 468

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 215/465 (46%), Gaps = 39/465 (8%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P    NG +  DSR  AP   + A +G + DGHD++  A + GA   +V   +V      
Sbjct: 19  PDVSANGPVVTDSREAAPGGVYVARRGENADGHDYVASAARAGAVCALVER-VVDLSDCP 77

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTY 137
            I    V D  GAL  LA A    LR+   I  +A+TGSVGKTTTK++L   LS+   T 
Sbjct: 78  PITQVVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKTTTKDLLLQVLSADAPTV 137

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A   S+NN +G+PLT+          + E+G S  G I +LT +  P +A+   +  AH+
Sbjct: 138 APRLSFNNEVGLPLTVLTADESTRHLVLEMGASGPGHIAYLTRIAPPDVAIELVVGHAHM 197

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  +  +A AKAE+ EG  +  T  LN DD     +  ++    ++   S G   +  
Sbjct: 198 GGFGSVAGVAEAKAELIEGSRQGATAVLNADDPNVAAMAPRAKGPVVRFSPS-GVGADVV 256

Query: 258 FQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +  +       S+     +G+     S+   HH      A      LG+   L A   +
Sbjct: 257 AEDVRVDAAGRASFTLAAPEGREPVSLSLVGAHHVANALAAAAGARALGLGLPLIARALS 316

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR- 371
             +ALS  H  + RG R    +     TLID+SYNAN  SM+AA++ L  I   G+GRR 
Sbjct: 317 GARALS-PHRMDVRGLR----IGAVPLTLIDDSYNANIDSMRAAVAALEAI---GKGRRT 368

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSI 422
           IAVL +M E+GE S + H  +  +LS         L   +H +  G        ++P  +
Sbjct: 369 IAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDAHYYSEGAA------SVPDRV 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V   E        +   L D  VV+VK S +   +++ + LLEE
Sbjct: 423 LV---EDPGAALAAVLDRLTDDCVVLVKGSYNSYSWQVADGLLEE 464


>gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 179/396 (45%), Gaps = 17/396 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR I   E F A+K    DGHDF+  A + GA   +V+         + +P   V
Sbjct: 2   GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDRFQE----EIELPQLVV 57

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+V  AL  LA   R   +A ++ ITGS GKTT KE+L   LS    T +  G+ NN IG
Sbjct: 58  DEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVLACLLSGFA-TLSTRGNLNNLIG 116

Query: 149 VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           VP+++ R      +F + E G+S  GE+  L   + P   ++T + PAHL +   +E +A
Sbjct: 117 VPMSMLRPEGASCEFAVLEAGISEPGEMERLAAAINPEWGIVTALGPAHLEDLGTVENVA 176

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K ++F+G  +   +F       +    A    L +K            F     + C 
Sbjct: 177 REKGKLFQG-SRLRRVFAGESCEPYLSDMAAPRVLLVKQDPYLSVEWAFRFSSEAGRTCL 235

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           EQ     ++ G      + G+G  +A N+ + L     +  +VD    AL  + P + R 
Sbjct: 236 EQ-----RIGGSVQRFEYEGLGAGLASNVALALATAFSMGLEVDQLRSALGSWKPSQMRN 290

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +        G    +D  YNANP SM+ +++     +P GE  R+ V+G M E+G  +  
Sbjct: 291 EWKEIG---GRLVFLD-CYNANPISMRDSLATFVSNTPEGE-PRMYVIGCMEELGSEASR 345

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            H +L     L N   + + G    ++   +  S H
Sbjct: 346 LHEELGREFPLRNQDFLLVIGSEAASVLRGMKDSGH 381


>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1
 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2
          Length = 454

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 214/474 (45%), Gaps = 40/474 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   LS+  KTY   G+YNN IG+P T+   P   +  + E G  HLG+I  L+ L RP
Sbjct: 117 XLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHXPEGTEKLVLEXGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G   +G++ L   D   E        L I
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGX-ASGSLLLAPADPIVE------DYLPI 229

Query: 245 -KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            K +  FG+       D   RK     + +++E   Q   + V     G + A N  +  
Sbjct: 230 DKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAXIA- 281

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISV 359
             V++     +  I+ L+  H +  R +  ++ A N     ++ + YNANP + K  +  
Sbjct: 282 SYVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAXKLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  G++IAVL D  E+G+ S   H      LS   +  V   G  +  L     
Sbjct: 339 FSAIPANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQLAS 398

Query: 420 RSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +     HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L
Sbjct: 399 QXFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSXNLAKLVESL 452


>gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL S4-378]
          Length = 394

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 186/397 (46%), Gaps = 37/397 (9%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V++ L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++
Sbjct: 18  PVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 77

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      
Sbjct: 78  NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 137

Query: 204 EEIASAKAEIFEGLEKTGTIFL---------NYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           EEIA AK EI  GL  +G +           N D  F +L   KS A  I  +    +++
Sbjct: 138 EEIAKAKLEITAGLNPSGILIYPHEENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAE 197

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVD 311
              F +  W+                +E+    IG H   N +  +     + I    + 
Sbjct: 198 GTSF-ITNWE--------------PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQ 242

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           +A+K +      E    R      +    +++++YN++P ++K  +     +   G+ + 
Sbjct: 243 SALKNM------ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKY 296

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSE 428
           + VL DM E+G+LS   H + AEVL    I  ++L G  + A K      I    V + +
Sbjct: 297 L-VLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFD 355

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 356 TKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 392


>gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis C6786]
          Length = 468

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 17/368 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+ +  + F A+KG H+D H+F+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+     A +      A  G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 IGLPLTLLRLTAAHRLAVVELGMNHPGETETLARIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +    I      G   +    +      
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYASIWRVAATGNRIVDFALHGAGHDTPAAV---TGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S + +      ++V  + +G H A+N L +          +    + L  F P +GR
Sbjct: 262 LDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAAFAAGVPLAAIRQGLEAFEPVKGR 321

Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            +  R  +      T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+ 
Sbjct: 322 LQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376

Query: 385 SQSFHIDL 392
             +FH ++
Sbjct: 377 GPAFHREI 384


>gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 481

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 204/461 (44%), Gaps = 36/461 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           +  DSR I   E F A+ G  +D HDF+      GAG  ++ N D        ++P   +
Sbjct: 35  VGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISNKDKCPK----NLPAVCI 90

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACI--GSYNN 145
           +D   AL +LA A R+     +  +TGS GKTT KEM+ +I  +++ +++  +  G+ NN
Sbjct: 91  EDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAAVGESHTLVTKGNLNN 150

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PLTL ++       + ELGM+H GE   L  + + +IA+I      H    + +  
Sbjct: 151 DIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQANIALINNAQREHQEFMATVAA 210

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A   A++   L + G      D  F +L +  +    +          NA   +    +
Sbjct: 211 VAQEHADVIRALPQDGIAVFPGDSEFTDLWRKAAADRKVLDFVLSSTQTNASSAV--GGK 268

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +EV  +  S+++  + +G H  +N L    +       +    + L  F P  G
Sbjct: 269 LLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIAAGISLKKIQEGLESFQPVNG 328

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N    TLID+SYNANP S++AAI  L Q    G    I VLGDM E+G+  
Sbjct: 329 RMQAKTIDANH---TLIDDSYNANPDSVRAAIDALKQ---SGNNAWI-VLGDMGEVGDQG 381

Query: 386 QSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             FH ++    +   IS ++         + GF     K AL  + H      MD L   
Sbjct: 382 PEFHQEVGAYAAEQGISKLFALGEQCQFAIQGFESAKGKSALSSATHF---SNMDSLIAQ 438

Query: 437 IQSSLVDGDV-------VVVKSSNSCGFYRLINLLLEEFPA 470
           ++ +L    +       ++VK S      R++  LLEE  A
Sbjct: 439 LRDALHAQALGTNQHLNILVKGSRFMRMERVVQALLEEAKA 479


>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. SR1/5]
          Length = 462

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 204/459 (44%), Gaps = 38/459 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  I+ DSR +     F  + G   D H FI   ++ GA    + T    ++     
Sbjct: 25  QEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIPQVMEAGA----LATLSERTLEGADH 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V   L A+  +A     +    ++ ITGSVGKT+TKE++   L    +T    G++
Sbjct: 81  PYIQVGSSLQAVKDIAEFYLEQLDIPVVGITGSVGKTSTKEVIASVLKEKYRTLKTQGNF 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+PLT+ R+  + +  + E+G+S  GE+  L  + +P   VIT I   HL N    
Sbjct: 141 NNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRLAKIAKPDTCVITNIGTCHLENLGDR 200

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DF 258
           + +  AK EIF+ +++   I LN DD     +K  +    ++ ++ FG  +NA     + 
Sbjct: 201 DGVLKAKTEIFQYVKR--NIVLNGDDDKLSTVKEYN---SMQPVF-FGNGENASVTCENV 254

Query: 259 QLRKWKQCSEQSWMEVQLQGKSME-----VVHHGI---GYHMAQNMLMTLGIVSILTADV 310
           + R  K  S     ++ L+GK  E       H  I   G HM  N L    +  +   + 
Sbjct: 255 ESRGLKGMS----CDICLKGKMAENGEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNA 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     +    P  GR       +    F ++D+ YNANP SMKA++ VL      G GR
Sbjct: 311 EQIKNGIESLEPVSGRFN----MIETDKFMIVDDCYNANPMSMKASLDVLQD----GLGR 362

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYS 427
           ++A+LGDM E+G    + H  +        I      G    H+          + V   
Sbjct: 363 KVAILGDMGELGTDEAALHEGVGVHAGQCRIDACICVGPLAAHIAEKASQTNPDLTVIRE 422

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + ++ L   + + +  GD ++VK+S+   F  ++  L E
Sbjct: 423 KDLESLLKNLNTYVKPGDTILVKASHFMKFENVVKALQE 461


>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 457

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 176/371 (47%), Gaps = 29/371 (7%)

Query: 22  VPQGFVNGIS---IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           V +G VN +S    D+R + P E FFA+KG +YD +DF+     K A  VVV + +++++
Sbjct: 18  VQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQGKAKQAAAVVV-SRVLSAV 76

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            S    V  V D L AL  LA   R      +I +TGS GKT+TK+M+   L    KT  
Sbjct: 77  NS-GTAVLQVQDSLKALQALARYNRQLFNIPVIGVTGSNGKTSTKDMIASVLGVRYKTLK 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+YNN IG+PLTL  M       + E+ M   GEI FL  L RP  AVIT I  AHL 
Sbjct: 136 TSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEIDFLCQLARPTGAVITCIGEAHLE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E IA+AK E+ + +   G   L+ + S    L      L    +  +G     D 
Sbjct: 196 LLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLA----GLTAGKVLFYGTEPQLDI 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +    +  S  S   V +  +  E +   I G H   N L  +G+   L          L
Sbjct: 252 RACDIQTGSNGSKFTV-ITSRGQEDIFLPIPGRHNIINSLAAVGVGLEL---------GL 301

Query: 318 SVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           S+   K G       G R       G  T+I++ YNANP S KAA++ L+ +  H   R+
Sbjct: 302 SLPEIKAGLAEVVLTGMRMEIIKING-ITVINDVYNANPDSSKAALTTLADLG-HNR-RK 358

Query: 372 IAVLGDMCEMG 382
           IAVLG M E+G
Sbjct: 359 IAVLGSMFELG 369


>gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Riemerella anatipestifer RA-YM]
 gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 424

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 190/387 (49%), Gaps = 29/387 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +SIDSR+IA  + FFA  G +++       A+ KGA  V+V      +I   S  +F 
Sbjct: 14  NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQKEYENI---SKNIFY 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L +L++  R +    IIA+TGS GKTT+KE++   LS   K     G+ NNHI
Sbjct: 71  VPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  + +  + E+G +H  EI  L  + +P    +T    AHL  F G+E + 
Sbjct: 131 GVPLTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPDYGYVTNFGKAHLEGFGGVEGVI 190

Query: 208 SAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQ 265
             K+E+++ L+K    I +N +D+  ++ K K ++     I  FG    + DFQL    Q
Sbjct: 191 KGKSELYDYLKKENKQILVNANDT-IQVEKTKDYS----KIICFGTLQSDYDFQLFYDNQ 245

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM--LMTLGIVSILTADVDTAIKALSVFHPK 323
                   V L  +  E++    G +   N+   +TLG+      D +   +A+  + P 
Sbjct: 246 -------RVGLIFEGEEMISQLTGAYNFTNISAAVTLGLH--FGIDKNLIKEAIQEYTPT 296

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +     + +G  TL+ ++YNANP+SM  ++   +  +    G +  ++GDM E+G+
Sbjct: 297 NMRSQ----IMQKGDKTLVLDTYNANPSSMAVSLENFALFN----GCKTVIIGDMLELGD 348

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S+  H  + +     N   +   G H
Sbjct: 349 ASKEEHKTILQKAQSLNFDKIITVGKH 375


>gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha153]
          Length = 452

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 179/362 (49%), Gaps = 21/362 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+  D VA  G+L    
Sbjct: 24  VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142
             VDD L AL  +A A R      +  ITGS GKTT KEML   L          A  G+
Sbjct: 81  --VDDTLTALQMVAKAWRENVDPFVFGITGSGGKTTVKEMLASVLRRRFGDNAVLATAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201
           +NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+   F 
Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        +A+  + 
Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K   C      ++    +   VV    G H   N    + +       ++   + L  F 
Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAVALSLAAGLSLNDVAEGLKGFS 314

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR    +  +     TLID++YNANP SMKAAI VL+++       RI V+GDM E+
Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367

Query: 382 GE 383
           GE
Sbjct: 368 GE 369


>gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis EO147]
          Length = 468

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 17/368 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+ +  + F A+KG H+D H+F+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+     A +      A  G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 IGLPLTLLRLTAAHRLAVVELGMNHPGETETLARIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +    I      G   +    +      
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYASIWRVAATGNRIVDFALHGAGHDTPAAV---TGV 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S + +      ++V  + +G H A+N L +          +    + L  F P +GR
Sbjct: 262 LDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAALAAGVPLAAIRQGLEAFEPVKGR 321

Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            +  R  +      T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M E+G+ 
Sbjct: 322 LQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376

Query: 385 SQSFHIDL 392
             +FH ++
Sbjct: 377 GPAFHREI 384


>gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 514

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 142/497 (28%), Positives = 223/497 (44%), Gaps = 46/497 (9%)

Query: 11  LQAIQGHSI--GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-- 65
           + AI G  +  G  P   V G +  DSR+++    F  + G   DGHDF   AV +GA  
Sbjct: 9   IAAITGGELVDGAEPDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFAGIAVDQGAVA 68

Query: 66  ----------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLAVA----ARLR 105
                     G++V N+D      S +  V   D+      V+ AL+KLA A    A   
Sbjct: 69  CLEGHRTGQPGILVDNSDADELSDSATSYVLEADNTGEGQAVITALSKLARAHTKKAVEE 128

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +  T+I +TGS GKT+TK+++   L    +T A  GS+NN +G P T  ++     + + 
Sbjct: 129 NGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGSFNNELGHPYTALKVGEHTTYLVS 188

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GT 222
           EL    +G I  L  +  P I  +  +  AH+  F   E IA AK E+ E L      G 
Sbjct: 189 ELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGEFGSKENIAQAKGELVEALPPAADGGV 248

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSM 281
             LN DD     ++ ++ A     I +FG    A  +    +     ++   + ++G+  
Sbjct: 249 AVLNADDPLVIGMRNRTSA----RIVTFGMDNPATVRAEDVELDAVARAAFTLCIEGEKA 304

Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GF 338
             +   + G H   N L    +      D ++   ALS    +      YR  +      
Sbjct: 305 RRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALS----EHVSSSEYRMDVRTRADG 360

Query: 339 FTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            T+I++SYNANP SM+A I  L+   S   +    AVLG M E+G+ S + H  LAEVL 
Sbjct: 361 VTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMGELGDDSLTEHAALAEVLY 420

Query: 398 LYNISHVWLSGFHV----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             ++ ++   G +     LAL+ A    ++     T       +   L  GDVV+VK+SN
Sbjct: 421 NRHVDNLVAVGDNTAMGALALE-ARRYGVNTEVVSTTQEAADIVLRHLKPGDVVLVKASN 479

Query: 454 SCGFYRLINLLLEEFPA 470
           +CG + + + +L +  A
Sbjct: 480 ACGLWAVAHTILADPAA 496


>gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus MTCC 5462]
          Length = 462

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 36/390 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +  +P   V D L A+ KLA    L +    ++AITGS GKTTTK+M    L++      
Sbjct: 76  TTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVK 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +AVIT I  AH+ 
Sbjct: 136 TPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGI---KTIYSF- 250
            F    +IA AK EI +GL++ GT   N D+       + +       G+    T+++  
Sbjct: 196 FFKTRAKIADAKMEITDGLKEDGTFIFNGDEPLLVSRAKQVTQSQETFGLHPENTLFAHS 255

Query: 251 --GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G   + +F + +W + +      + + G+          Y++  N L  L +      
Sbjct: 256 ISGHRNHTEFTVEQWPELT----FSIPIMGE----------YNVV-NALAALLVGRRFHV 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   KAL+ F     R +     + +    ++ + YNANP +MKA I   S+      
Sbjct: 301 KPEAMQKALAHFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEF--QTA 355

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIH 423
           GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL    P+  +H
Sbjct: 356 GRHIAVLGDMLELGEQSRTLHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVH 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +  +    +   +Q+ +   D++++K+S+
Sbjct: 416 YYPLDAKSTMIRDLQNDVGHDDMLLLKASH 445


>gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 210/444 (47%), Gaps = 36/444 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    VV+    A   +  I +  VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEAEYAPEDNKHIIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  L+         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + D  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHDLAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260
           K E+++ L +    T+F+++D+ +   L   +  L +       ++Y  G  + N+ +  
Sbjct: 194 KGELYDYLREKDDSTVFIHHDNVY---LMDIARGLNLIPYGSENSLYVNGHVTGNSPYLT 250

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +WK   + +  +VQ Q          IG +   N L  + I      +     +AL+ +
Sbjct: 251 FEWKAGKDGNLHQVQTQ---------LIGEYNFPNALAAVTIGRFFGVESSKIDEALAGY 301

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P+  R +  + A N    TLI ++YNANP SM AA+     ++     R++ +LGDM E
Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---RKMLILGDMRE 354

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  S + H  + E L   +   V L G    +     P      Y+   + L   +Q+ 
Sbjct: 355 LGAESAAEHHKIVEYLQECSFEKVLLVGELFASTNPPYPT-----YANAQE-LIKDLQTE 408

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
              G  +++K SN      ++  L
Sbjct: 409 NPQGYTILIKGSNGIKLSTVVEFL 432


>gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax
           ebreus TPSY]
 gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           ebreus TPSY]
          Length = 482

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 165/370 (44%), Gaps = 26/370 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++A  + F A+KG  +D H F+     +            A +    +P   V 
Sbjct: 40  VHTDTRTLAAGDLFVALKGERFDAHQFL----SQARTAGAAAAIAHAGLADAGLPGIEVP 95

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147
           D L AL  LA   R +    +IA+TGS GKTT  +M+   L + K     A  G++NN +
Sbjct: 96  DTLAALGALATGWRAQRDLPLIAVTGSNGKTTVTQMIAAVLRAWKGDAALATQGNFNNDV 155

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+    +  + ELGM+H GEI  L  + RP +A++      HL     +E +A
Sbjct: 156 GVPLTLLRLRPGHEAAVVELGMNHPGEIANLADIARPTVALVNNAQREHLEFMHTVEAVA 215

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                +   L   GT      D+F  L +  +   G +   +FG++     ++R    C+
Sbjct: 216 HENGSVLSALPADGTAVFPAADAFTPLWRELA---GTRHCLTFGEAAG---EVR----CA 265

Query: 268 EQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              W      + +     + +      G H   N L            + +  + L+ F 
Sbjct: 266 AAQWGDGAWQVRIDTPNGAFDTRLAIAGRHNVTNALAATACALAAGGPLASIARGLAAFA 325

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  GR +           T++D+SYNANP S+ AAI VL+ +     G R+ VLGDM E+
Sbjct: 326 PVNGRSRALAVRCGGRSITVVDDSYNANPDSVHAAIEVLAALP----GPRLLVLGDMGEV 381

Query: 382 GELSQSFHID 391
           G+    FH +
Sbjct: 382 GDQGSQFHAE 391


>gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 431

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 204/430 (47%), Gaps = 31/430 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIGV
Sbjct: 74  DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264
           K E+++ L +K  T F+++D+ +   +    + +   T   +Y  G+ + N+ +   +WK
Sbjct: 194 KGELYDFLRKKDATTFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +         G++ +V    IG +   N L  + I      +     KAL+ + P+ 
Sbjct: 254 AGKD---------GEAHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDKALAEYTPQN 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G 
Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + +   +   VWL G    A + +     +V   E +  L    Q     
Sbjct: 357 DSPAEHQKIVDYIKESDFEKVWLVGEQFAASEHSFKTYANVQ--EVIKDL----QEDKPK 410

Query: 444 GDVVVVKSSN 453
           G  +++K SN
Sbjct: 411 GYTILIKGSN 420


>gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
 gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
          Length = 448

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 212/445 (47%), Gaps = 33/445 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDS+ + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 84  VVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLLSSVYRVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT I   H+ NF   G++
Sbjct: 144 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNFPDQGVQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263
            IA  K++I   L  +    L  D  ++     +S +      +SF    + ADF    +
Sbjct: 204 GIAEEKSQI---LCNSRVQLLPKDSPWYPHFIKQSMS---AEKFSFAFYDETADFY---Y 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHP 322
           K   + S +    +G     V     Y  A  N+L++L +  +L   VD  I +      
Sbjct: 255 KVIRKDSVVISTPEGDIDFAV--AFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQL 312

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R+  ++  G   +I+++YNA P +M AA+  +    P   G+ I +LG M E+G
Sbjct: 313 PP---MRFEQSIRNG-IQIINDAYNACPEAMLAALDAIPH--PSEGGKVILILGHMAELG 366

Query: 383 ELSQSFHIDLA-EVLSLYN----ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
             S+  H  +A + LS  N    I   WL   H++        +  V +  +  G+   +
Sbjct: 367 NYSEEGHTVVANKALSKANIIFFIGEKWLPIRHLVKHG-----ACEVSFYPSAQGIEEML 421

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462
           +  +  GD+V++K S S     L++
Sbjct: 422 KKVVQQGDIVLLKGSRSLALESLLS 446


>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 476

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 208/444 (46%), Gaps = 39/444 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           + IDSR ++    F A+ G   DGH ++    Q GA   +VN     + G    P     
Sbjct: 33  VVIDSREVSEGGLFVALHGERTDGHRYVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGF 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYN 144
             V+D +  L  LAV  R      I+AI GS GKTTTKEM+   L+S     +   G+ N
Sbjct: 93  LVVEDTVAGLQHLAVRYRNTFSIPIVAIGGSNGKTTTKEMVAAVLASDSSAVSMSQGNRN 152

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH+GVPLTL +M    +  + E+G++H  E+  L  LV P   ++T I   HL     ++
Sbjct: 153 NHLGVPLTLLQMRHSTERAVVEVGINHPNEMAMLAELVAPTHLLLTNIGHEHLEFLGDLD 212

Query: 205 EIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DF 258
            +A A+ ++++   + G T F+N DD   E L+A +  +  +  YS  ++ ++     D 
Sbjct: 213 GVAKAETQLYDYARQHGATAFINADD---ERLRAAAEGMPFRIDYSLHEAVDSLVWAEDV 269

Query: 259 QLRK---------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            + +          K  SEQ  + +   G+     H+ +    A  + +  GI       
Sbjct: 270 TVERDGRLSFLLVTKGRSEQERLRLHFTGR-----HNVLNAVAAATVGLQFGI------S 318

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +    + L+   P  G  KR    +  G   L++++YNAN  SM+ AI  L  +  +  G
Sbjct: 319 LHHICEGLAGLQPAPG-WKRLEV-VEVGGVRLLNDTYNANSDSMRRAIDALCDMPCN--G 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           RRIAV+GDM E+G+ ++  H  +A  +    ++ ++  G    A+    P   +  YSE 
Sbjct: 375 RRIAVVGDMLELGDAAEVEHQAVAHYIQRSLVTKLFTFGTQAAAICRHAPELCYGSYSE- 433

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSN 453
              L   +   L +GDVV+VK S 
Sbjct: 434 HSALLDDLLHVLSEGDVVLVKGSR 457


>gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 457

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 210/450 (46%), Gaps = 37/450 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ISIDSR++   + F AIKG ++DGH F+   + KG   VV+   M   + S + P + V
Sbjct: 30  NISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKGMQRLLPS-NFPYWVV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   A  KLA+  R +    I+AITGSVGKTTTKEM+   L+ + +      ++NN IG
Sbjct: 89  NDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNEIG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      + I  
Sbjct: 149 VGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITH 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE-LLKA--KSHALGIKTIYSFGKSK--NADFQLRKW 263
           AK EI + L   G + +  +D F E  LK   K   + +K +    + +    D  LR +
Sbjct: 209 AKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGF 268

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S+++   + ++  + E+     G+H A N L    +   L  D  +  K    F   
Sbjct: 269 YNPSKKT---ILIEENTFEISLE--GFHNASNFLFAYAVSKELGIDFASFNKF--DFVSF 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR K  +        T+ DESYNA+P S+KA I  L +  P     +  + G M E+G+
Sbjct: 322 GGRNKILKSLKT----TIYDESYNASPESVKACIKNLLE-KPRN---KFFIFGSMQELGK 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF------- 436
            S+ +H    E+ +L N S +       L + +      + +Y +      +        
Sbjct: 374 ESEKYH---KEIFNLINNSDIE----KCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVP 426

Query: 437 --IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             I  S   GD +++K S      ++I L+
Sbjct: 427 QEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA2]
          Length = 485

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 204/481 (42%), Gaps = 65/481 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA        IIA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317

Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363
           D  T  +          R   R +         L+++ YNANP SM A+++ +  +    
Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLATR 377

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
               P   G  +AVLGDM E+G+ S   + +   +      +H   +GF V +A+ D   
Sbjct: 378 RVRDPQTRG--VAVLGDMLELGQDSARLNAESGRL-----AAH---AGFDVIIAVGD--- 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG----------DVVVVKSSNSCGFYRLINLLLEEFP 469
            + ++      +G  + +  S V+G          DVV++K+S      R+   + EE  
Sbjct: 425 EAENIAEGARAEGARVIV--STVEGASGSLGWTSHDVVLLKASRGLALERVGREVFEERE 482

Query: 470 A 470
           A
Sbjct: 483 A 483


>gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
 gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
          Length = 447

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 202/454 (44%), Gaps = 40/454 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81
            V  +  DSR +     F  + G   DGH FI  A+  GA         +A+  S+    
Sbjct: 20  IVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGA---------IATFWSVQDQP 69

Query: 82  -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             I V  V D L A+ KLA   R      ++AITGS GKTTTK++    LS   +TY   
Sbjct: 70  EDITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTKDLTASVLSQAFRTYKTQ 129

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YNN IG+P T+  MP D    + E+GM H G++  L+ + RP IA IT I  AH+ N 
Sbjct: 130 GNYNNEIGLPYTILHMPKDTKVVVLEMGMDHAGDLTTLSTIARPDIAAITMIGEAHIENL 189

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
               +IA  K EI   L   G + +  D+     L         + + +FG     D   
Sbjct: 190 GSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGM----TQQVVTFGIDA-GDVAA 244

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              ++ +EQ+   V+ Q   + +    +G +  +N L+   I        +     L   
Sbjct: 245 HILEEHAEQTVFSVKEQDYRIPL----LGTYNVKNALIAYSIGEKFGVTPEQIANGLKNV 300

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + R +       +    L+ + YNANP +M   +    ++    +GRR AVL DM E
Sbjct: 301 QVTKNRTQWLEM---ENGTRLLSDVYNANPTAMGLVLDSFGKLPV--QGRRFAVLADMLE 355

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDA-LPRSIHVHYSETMDGL 433
           +G  S   H  +A+   + N   ++L G  +      LA +D+ +P  + ++ +  +  L
Sbjct: 356 LGPESSVMHAAMAD--HVQNYDGLFLVGEQMDYLAKELAARDSDVP--LELYDANELAAL 411

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              ++  L   D++++K SN     ++++ L  E
Sbjct: 412 IEDLKQLLQPADMLLLKGSNGMKLNQVVDALTSE 445


>gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
 gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
          Length = 452

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  +     +V+    L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQGLDIPQI 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              +++  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAVKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     LN    TL+D++YNA+  +++AAI  L +     +G+R+  +  M E+G+ ++
Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLDEF----DGKRVIAITSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  V+L G
Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387


>gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
 gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
          Length = 370

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 179/380 (47%), Gaps = 33/380 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  +G++ L   D   E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLVPADPIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRIAVLGDM 378
             S I  +  G++IAVL DM
Sbjct: 338 TFSAIPANEGGKKIAVLADM 357


>gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
 gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
          Length = 496

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 197/449 (43%), Gaps = 21/449 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR++   + F A++G  +DG+ F+  A   GA   + +    A++    +P  
Sbjct: 38  VRRVHTDSRTLREGDLFVALRGDRFDGNAFLAQARAAGAVAALCSD--AAALRQAQLPGI 95

Query: 87  GVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACI 140
            V D   AL +LA   R       +  +IA+TGS GKTT  +M    L + K     A  
Sbjct: 96  VVSDTRRALGQLAQGWRQHIARGHRLPLIAVTGSNGKTTVTQMTAAILRAHKPQTMLATE 155

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NN IGVPLTL R+    +  + ELGM+H GEI  L  + RP +A++      H    
Sbjct: 156 GNFNNDIGVPLTLLRLRPRHELAVVELGMNHPGEIAELAAITRPTVALVNNAQREHQEFM 215

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSH-ALGIKTIYSFGKSKN 255
             IE +A     +   L   G      DD++     EL  A+S     +    +     +
Sbjct: 216 HSIEAVARENGAVISALGADGVAVFPSDDAYTGIWHELAGARSRLTFSVNDAAADLHCAD 275

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 +W+   +    EVQ +    ++       G H  +N L            ++  
Sbjct: 276 PALAAPQWQVDDKGGRWEVQARTPAGALRFTLRVAGLHNVKNALAAAACALAAGVPLNAI 335

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L  F P  GR +  R  +     TLID++YNANP S++AAI VL+ +     G R+ 
Sbjct: 336 ARGLESFEPVSGRSRALRLPVAGRELTLIDDTYNANPDSVRAAIDVLASLP----GPRLL 391

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           VLGDM E+G+    FH ++        I  +   G    A   A   +  +H+ + +D L
Sbjct: 392 VLGDMGEVGQEGPRFHAEVGTYARARGIELLHTLGEMSEATTQAF--TGGMHHGQDIDAL 449

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            L + +SL     V+VK S      R++ 
Sbjct: 450 NLVVLASLPQVHSVLVKGSRFMKMERVVQ 478


>gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 460

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 215/453 (47%), Gaps = 43/453 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            +G++ DSR+      F A+KG  +DG+DF L A+ KG    VV+    A +        
Sbjct: 34  CSGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDR---AELAQKEARCL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +LA   R +    II ITG+ GKTTTKE+++  L S     A +G+ NN 
Sbjct: 91  YVEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNLNNQ 150

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL     ++ +G+ E+G SH+G+I  LT +  P   +IT I  AHL  F   E +
Sbjct: 151 IGVPLTLLSFTPEMQYGVVEMGASHIGDIAELTAIAEPDFGLITNIGRAHLEGFGSFEGV 210

Query: 207 ASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR---- 261
             AK E+++ L +  G  ++N DD    LL   S  L ++T Y  G S+ A F+      
Sbjct: 211 TKAKCELYDWLGQHNGEAWVNADDP---LLMQHSAPL-VRTTY--GTSREAFFRASLLDH 264

Query: 262 ----------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                      W++  E   +  QL GK          Y++  N L  + +   L     
Sbjct: 265 PLGYFLAFAFYWQR--ETYRVHTQLVGK----------YNLP-NALAAVAVGLRLGVAPP 311

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             + AL  + P   R +      +     L+ ++YNANP+SM  AI     +S  G   +
Sbjct: 312 DIVMALEHYSPSNSRSQYIANTPHHN--NLVVDAYNANPSSMYTAIENF--LSTSGAQAK 367

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETM 430
             +LGDM E+G  S+  H+ L + L+        +L G    AL+    ++ H+HY  + 
Sbjct: 368 YLILGDMFELGSASREEHLALVQRLARETTDITCYLVGKEFAALESE-AKAPHLHYFPST 426

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + L   ++ + ++   ++VK+S    F  L+ L
Sbjct: 427 EILAEQLRLAPIEHAFILVKASRGMHFESLVEL 459


>gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
          Length = 452

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 205/440 (46%), Gaps = 22/440 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR     + F A++G  ++GH F+  A+ +GA  V+V+ D   S+     P   V 
Sbjct: 28  VSTDSRDDLSNKLFLALRGEKFNGHSFVDKAIDQGASGVLVDVDSGVSLE----PRIVVH 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A + +A   R   +  + +ITGS GKT+ K+ L  +L           ++NNHIGV
Sbjct: 84  NTLLAYHDIARFLRDAFQGRVFSITGSNGKTSVKDWLAQSLEDFGCVLKTQSNFNNHIGV 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL ++  +  F + E G S  GEI  L+  +   + ++T  + +HL  F   + IA  
Sbjct: 144 PKTLIQIENNHQFAVVEAGTSFPGEISILSKTIHADVVIVTNASGSHLEGFGSTKAIAEE 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268
           K ++         + LN+DD FFE  K  +   G +  +SF  S  +AD  +      + 
Sbjct: 204 KGDLITYSSLYSKVILNFDDPFFEYWKGLT---GKREFFSFSLSDASADLYVSDLDLGAS 260

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +S   V  + +S  V     G H   N L  +G  +++  DV   I AL+          
Sbjct: 261 ESSCIVHFRDQSSLVTIPAPGKHQVYNALAVIG--ALMHVDVHF-IDALNKVSKAVQVKG 317

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R    L +    LID+ YNA+P S++AAI VLS   P    ++  VLG + E+G+  +S 
Sbjct: 318 RMEFGLTKNNALLIDDCYNASPTSVEAAIDVLSMQKPI---KKWLVLGALGELGDQEESI 374

Query: 389 HIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           H  L +  +   I  V     ++G  V   K  + R   V+ S+     FL    +L + 
Sbjct: 375 HRGLGKYAAEKKIDCVLAVGPIAGLAVDEFK-KVGREGRVYASKESLAQFLL---TLNNE 430

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             V+VK S S     ++N++
Sbjct: 431 HAVLVKGSRSAKMDDIVNVI 450


>gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
 gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
          Length = 475

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 173/392 (44%), Gaps = 33/392 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F AIKG  +D HDF+     +    V++      +    ++P   V 
Sbjct: 34  VSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAVLITR----TPQDWTVPALKVT 89

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D    L  LA   R +    ++A+TGS GKTT KEM+     A        A  G++NN 
Sbjct: 90  DTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNND 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL R+       + ELGM+H GE   L  +  P +AV+      H    + +E +
Sbjct: 150 IGLPLTLFRLHAAHQLAVVELGMNHPGETLELAKIAEPTVAVVNNAQREHQEFMATVEAV 209

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +             S+  DF L   ++ 
Sbjct: 210 ALEHASVIHALTPEGVAVFPADDAYASIWRVAATG-----------SRIMDFALNSAERI 258

Query: 267 SEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +E +         + +      +EV    +G H A N L            +D   + L 
Sbjct: 259 TEAAVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALAATSAALAAGVSLDAIKRGLE 318

Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLG 376
            F   +GR +  +  L      T+ID++YNANP SM+AAI VL S+ +P     R+ V+G
Sbjct: 319 SFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLASRAAP-----RVLVMG 373

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           DM E+G+   +FH ++        I  ++  G
Sbjct: 374 DMGEVGDNGPAFHREIGAYAKERGIDALYAMG 405


>gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
 gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
          Length = 455

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 213/420 (50%), Gaps = 37/420 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +  F++L QA+ G ++ +    + +      D+R       FFA +G ++DGH+++  AV
Sbjct: 1   MLDFNELCQALNGEAL-VRDANYDDYRAFESDTRKDLTDTVFFAFEGDNFDGHNYLDLAV 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKT 120
           +KGA ++VV  + V  +   S+ +  VDD + A  +L     + +  A    ITGS GKT
Sbjct: 60  EKGARVLVVAKE-VELLTLDSVAMIKVDDTVKAWQRLGHFLLQKQKSARRFGITGSSGKT 118

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +T  +L+  L  I  K+  +  G+ NNHIGV   + R+  D  F   E+G +H GEI  L
Sbjct: 119 STNAILSQLLEFIRPKQVLSTHGNTNNHIGVTQNIVRLKGDESFFSLEVGTNHPGEIADL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V PH A++T++  +H+ NFSGI+ I   K +IF  + + G   +        L+K  
Sbjct: 179 AKIVVPHAAILTSVGASHIGNFSGIDAIFDEKIDIFRYMARDGVAIVPA-----ALVKRI 233

Query: 239 SHALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQ 294
             AL  +   T  SFGK K AD +L  ++   E+S   V+L+ G+S+ +     G H   
Sbjct: 234 EDALPERKDITYISFGKEKYADVRLGSYELGLEKSTFLVKLKSGESLSLESILSGEHQLL 293

Query: 295 NMLMTLGIV-------SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           N+   + ++       S   +D+ +A+ ++++     G   +     +Q   T + + YN
Sbjct: 294 NICACVALLENYQEEYSFTISDLKSALSSVAL----PGMRMKTEKVEDQ---TFVLDCYN 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH---IDLAEVLSLYNISHV 404
           ANP S  A +  +  +   G    + VLGDM E+G++++ +H   +D A+ +  +++  V
Sbjct: 347 ANPQSTSAFLDWVKSVYKSG----VLVLGDMLELGDMAKKYHQEILDKAKAMQGFDLVTV 402


>gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
 gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
          Length = 909

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 179/360 (49%), Gaps = 30/360 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR++   E F AIKG ++DGHDF+        G +V   +  A +       F VD
Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFL--ETIDCIGAIVSKPNPKAKVRQ-----FIVD 545

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY------ 143
           D   A+  +A A R +    +IA+ GS GKTT KEM+    +SI K+YA  G+Y      
Sbjct: 546 DTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMI----ASILKSYAGDGAYFATRGN 601

Query: 144 -NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NNHIGVP +L  +  +    +FELGM+H GEI +L+ L +P IAV+T     H      
Sbjct: 602 LNNHIGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVVTNAQREHQEFMKS 661

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E +A     +F+ L+  G         +  +   +S     K+I +FG++ + +     
Sbjct: 662 VEAVARENGSVFQSLDADGVAIYPRSSPYSYIWDEQSRHC--KSI-TFGEAGSVNATNIS 718

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +   SE S   V ++ + + +    +G H  QN L    I + L+A +D       +   
Sbjct: 719 YD--SEGSSFTVDVESEKLNIHLSILGDHNIQNALA--AIATTLSAGIDKKYIESGLAEF 774

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           K  +G+  +  L  G   ++D++YNANP S+ AAI +L  ++      R  VLGDM E+G
Sbjct: 775 KAVKGRLQKHILKDG-TVILDDTYNANPDSVIAAIDILKTLAT----PRTLVLGDMGEVG 829



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 140/325 (43%), Gaps = 39/325 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87
           + +DSR I   + F A KG   DG +F+  A++ GA  +++  N D+V     L  PV  
Sbjct: 18  LRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDIVV----LQTPVLV 73

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V ++   L +LA A      SK  +IA+TG+ GKT+    ++ AL+SI    A IG+   
Sbjct: 74  VKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGTLGT 133

Query: 146 ------HIGVPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                 ++G  LT          LA + V     I  +  S +G  +     V+  IA  
Sbjct: 134 ILPSGENLGGSLTTPDVLSVHRILATL-VARGIEIVTIEASSIGIEQGRLDSVQIKIAGF 192

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDD----SFFELLKAKSHALG 243
           T +   HL     ++E   AK  +F  +GLE       N DD      +E  KA S  LG
Sbjct: 193 TNLTLDHLDYHKSMQEYEEAKTSLFLRDGLE---CAIFNLDDMAGVRMYEKSKA-SRNLG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               YS   +  A     + +         +QL     +V+    G H   N+L+  G++
Sbjct: 249 ----YSILSNSKAVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVL 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK 328
           S L   V+  ++ ++   P  GR K
Sbjct: 305 SHLNVSVEKIVEIIATIRPVPGRLK 329


>gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
 gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
          Length = 439

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 182/390 (46%), Gaps = 27/390 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       FFA+KG  +DG+ F   A++KG    V++    A  G+  + +  VD
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNGRLIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL    +LA   R R    +I ITG+ GKTTTKE++   L          G++NN +GV
Sbjct: 74  NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------- 261
           K E+++ LE   G +FLN  +     + A+ +      I S+G+ +  + +         
Sbjct: 194 KGELYDFLESHNGLLFLNESNPDLMEMAAQRN---FGRIISYGRDEGGNVEGEVIDCSPF 250

Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              +W+Q         Q+   + EV  H IG +   NML  + +             AL 
Sbjct: 251 LNFRWRQHLHAG----QMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALG 306

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +      N+    LI ++YNANP+SM AAI     +      R++A+LGDM
Sbjct: 307 HYIPSNNRSQLETTEHNR----LIVDAYNANPSSMAAAIDNFKLMKAE---RKMAILGDM 359

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+G +S   H    + L+   I  VWL G
Sbjct: 360 LELGTVSDEEHQKTVDALAAAGIKEVWLVG 389


>gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
 gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 198/432 (45%), Gaps = 19/432 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+S DSR+I     +  + G  +DG  FI     K A   +++ D      ++SIP 
Sbjct: 26  MIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKKAAAFLIDKDYKIK-NNISIPY 84

Query: 86  FGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             VDD L AL  LA A R   S   II ITGS GKTTTK++L   L         IG+ N
Sbjct: 85  IRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTKDLLYEVLKKKFNVQKTIGNLN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP T+  +  D +  I E+G    G+I   T +V+P IA+IT I  +HL      E
Sbjct: 145 NEIGVPKTILSLREDCEVAIVEMGTDSFGDISLTTSIVKPDIALITNIGDSHLEKLKTKE 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            I  AK EI EGL   G    N DD   +      + +  K I SFG++ + DF ++   
Sbjct: 205 GILKAKMEIVEGLNPEGYFIYNGDDPTIK-KDISLYTIKQKKI-SFGENDDNDFVVKDVG 262

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +  + + +     G   E+    +G H   N    L I S+L    +   + L    P  
Sbjct: 263 E--KLAKVSFSHDGDVYEIPL--LGSHNVYNGGACLLISSLLGLSKEQIKEGLLEVTPAN 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +     +    F ++D+ Y +NP S+++ ++    +   G   +I VLGDM E+GE 
Sbjct: 319 NRSR----IIEFDGFDVLDDCYKSNPQSLRSGLNTTKMLG--GYDNKILVLGDMLELGES 372

Query: 385 SQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            +  H  + + +   ++ +      LS +      +  P++   H++   D L   ++S 
Sbjct: 373 EKDLHYQVGKEIDPKDVHYCLFFGELSYYMYQGALENFPKNRLFHFTSKND-LIDKLKSL 431

Query: 441 LVDGDVVVVKSS 452
           +    ++ VK S
Sbjct: 432 ITRSSLLFVKGS 443


>gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC
           6.3.2.10) [Burkholderia rhizoxinica HKI 454]
          Length = 476

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 199/446 (44%), Gaps = 24/446 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P   F A+KG  +D HDF+    ++G   V+V+     S G   +P   V 
Sbjct: 29  VSTDSRSCGPASLFVALKGERFDAHDFLPDLARRGVAAVLVSR----SPGDWRVPAIRVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL  LA   R R    ++A+TGS GKTT KEM+    ++     +  +  G+ NN 
Sbjct: 85  DTRAALGALAAGWRRRFALPLVAVTGSNGKTTVKEMIASIFAAAVGHAQRLSTQGNLNNV 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL ++       + ELGM+  GE + L  +  P IA++      H    + +E +
Sbjct: 145 IGMPLTLLQLAPQHRLAVVELGMNRPGETQQLARIAGPTIALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   GT     DD +  + +  +    I          N+D  ++     
Sbjct: 205 ALEHASVIHALPPDGTAVFPADDPYAGIWRVAATDNRIVDFALRRPGANSDAAVQ--GTT 262

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++   + ++ +  ++EV     G H A+N L            +D   + L  F P  GR
Sbjct: 263 TDTGALRIETRAGALEVSLRAPGEHNARNALAATAAALAAGVGLDAIRRGLETFEPVNGR 322

Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              +   A+     T+ID++YNANP SM+AAI VL+      +  R+ V+GDM E+G+  
Sbjct: 323 LQAKLAQAMPWAGATVIDDTYNANPDSMRAAIDVLTMR----QAPRVLVMGDMGEVGDNG 378

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL------FIQ 438
            +FH ++        +  ++  G    A +DA      H H+ ++ + L         + 
Sbjct: 379 PAFHREVGAYARERGLDALYALGD---ASRDACTAFGPHAHHFDSAEALICALLRQDAVA 435

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           S    G  ++VK S      R++  L
Sbjct: 436 SERAAGATILVKGSRFMRMERVVQAL 461


>gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
          Length = 464

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 201/454 (44%), Gaps = 27/454 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S D+R++ P   + A++G  +DGHDF   A  +GA  ++V   +      + +P  
Sbjct: 24  IDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLL-----PIELPQV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----TIALSSIKKTYACIG 141
            V D   AL K+A   +      + AITGS GKT+ K +L      +A  + K  YA  G
Sbjct: 79  LVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVKSLLLSILQQVARHAHKVVYANPG 138

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P D D+ ++E+G    G+I +LT + RP  A++  IAPAHL    
Sbjct: 139 NRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARPRYALVNNIAPAHLERMG 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADF 258
            +  +A  K  I+  L   G   +N DD++      + H +G      +  +G    AD 
Sbjct: 199 SLLGVAVTKGAIYAALPADGVAVINVDDAYGRWF--EQHFVGTPARCRVLRYGLEHTADV 256

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R  +  ++ S   +        VV    G H   N L    +      ++      L+
Sbjct: 257 TARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAAASLALAAGIELALVAAGLA 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P  GR   ++  L+ G   L+D+SYNANP S+ AAI  L+     G      VLGDM
Sbjct: 317 DAQPVPGRQIAHQ--LHNGAV-LVDDSYNANPGSLAAAIDALAAAPEEG----WLVLGDM 369

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G  +++ H           +  ++  G    A   A       H++ T D L   ++
Sbjct: 370 RELGPDAEALHAQAGLRARAAGLKRLYALGPLSAAAATAFGEGGR-HFA-THDALSQALK 427

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL---EEFP 469
             L  G   +VK S       ++  LL   EE P
Sbjct: 428 DELHAGVRCLVKGSRGSAMDTIVKALLAQGEESP 461


>gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
 gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 193/388 (49%), Gaps = 30/388 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I +  VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260
           K E+++ L  ++  T+F+++D+++   L   +H L +       ++Y  G  + N+ +  
Sbjct: 194 KGELYDYLREKEDSTVFIDHDNAY---LMDIAHGLNLIPYGSEDSLYVNGHVTGNSPYLT 250

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +WK   +    +VQ Q          IG +   N L  + I      +     +AL+ +
Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P+  R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E
Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVK---KKMLILGDMRE 354

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G  S + H  + + L   +   V L G
Sbjct: 355 LGAESAAEHRKIVDFLQECSFEKVLLVG 382


>gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 437

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 188/373 (50%), Gaps = 22/373 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V+  + A    L +P 
Sbjct: 16  MIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPA----LHVPQ 71

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYAC 139
             V +   AL ++A A   R +AT +IA+TGS GKT+ K +L   L+   +      YA 
Sbjct: 72  VVVANTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVDGITAYAN 130

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP +A++  IAPAHL  
Sbjct: 131 PGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLER 190

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257
              +  +A  K  I+  L   G   +N DD+F    + +  +  L  + +  +G   +A+
Sbjct: 191 MGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAE 250

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ +   +   ++    QG++  VV    G H   N L   G+   L A +   I A
Sbjct: 251 ITARQLRLHAAGAQFVLATPQGEA-PVVLPLPGRHNVLNALAATGLA--LGAGIALPIIA 307

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +    +  G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VLG
Sbjct: 308 AGLAQATQVAGRQIAHTLATGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 362

Query: 377 DMCEMGELSQSFH 389
           DM E+G  + + H
Sbjct: 363 DMRELGPEAPALH 375


>gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanine-ligase murF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine-ligase murF
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 445

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 211/450 (46%), Gaps = 34/450 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +G V G  +DSR     E F A++G H DGH ++    QKGA   +V+ +    +    +
Sbjct: 21  EGVVKGFCVDSRLTKKNEVFVALRGEHVDGHAYLNEVKQKGALAAIVDQNYQGPV--FGM 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +F  ++ L AL  LA    L   + ++A+TGS+GKTTTKE +   L     T A  G+ 
Sbjct: 79  HLFRTENPLLALQMLAQKC-LEKTSRVVAVTGSIGKTTTKEFIKTLLEQRYVTAASQGNS 137

Query: 144 NNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           N+ +G+PLT+        D  + E+GM+  G++  L ++  P ++V+TT A  H   F  
Sbjct: 138 NSQVGLPLTVLNHTTGTEDILVLEMGMTEPGQLSTLVNIAHPEVSVLTTAALVHACRFET 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +++IA  KAEIF          L   D   E  +  +     K I     S  AD+ L  
Sbjct: 198 LKDIALTKAEIFSH----SHTRLGVVDREIEAYETIAQIGECKKISFSTVSSRADYHLET 253

Query: 263 WKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +       EV+L  +G+S+ +    + G H   N+L  + +        +   +A+  
Sbjct: 254 VNE-------EVRLKTEGQSISLGKMCLPGKHNLHNLLAAIAVARYFELTWNEIKQAIPF 306

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               E   +R +    +G +  +++SYNA+  S+K+A+  L   +  G+G +IAVLG M 
Sbjct: 307 LKLPE---RRLQFVQKEGVY-FLNDSYNASELSVKSALETLPNAT--GKGYKIAVLGSMM 360

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-----KDALPRSIHVHYSETMDGLF 434
           E+G  S   H  + E  +L  +  ++  G   L +     K   P  + +  SE +  L 
Sbjct: 361 ELGHFSDECHQRVGE-FALNYVDKMYCLGAECLPIVEVWKKANRPVELFMERSELISTL- 418

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              + +L   DVV++K S S   ++++  L
Sbjct: 419 ---KKNLKPADVVLLKGSRSKELWKILEEL 445


>gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
 gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
          Length = 464

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 178/360 (49%), Gaps = 23/360 (6%)

Query: 33  DSRSIAPQEA-----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           DSR  A  +      F A+ G  +D HDF+   + +GA  +V   D +A  GSL      
Sbjct: 34  DSRQAAAADERGTDLFVALVGDKHDAHDFVPAVLAQGALALVSRQDCIALSGSLP----- 88

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144
           V D L AL  LA A R      ++ ITGS GKTT KEML   L          A  G++N
Sbjct: 89  VADTLAALQTLAAAWREAVNPMVLGITGSSGKTTVKEMLAAILRRQFGEAAVLATAGNFN 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGI 203
           NHIG+PLTL  +     + + E+GM+H GE+  LT +  P  A++     AH+   F G+
Sbjct: 149 NHIGLPLTLLALRPQQRYAVIEMGMNHFGELDALTRIACPDAALVNNALRAHIGCGFDGV 208

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +IA AK+EI+ GL ++GT  +  +D + E+ +A   AL ++ I  FG  K  +      
Sbjct: 209 GDIARAKSEIYRGLPESGTALIPAEDEYAEVFRAACRALNLRQI-EFGVDKG-EVHAENV 266

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +        ++  Q +   V     G H   N +    +       +  +  AL+ F   
Sbjct: 267 RLLPLGCRFDLVWQDQRAAVELPVPGKHNVANAVAAAALALQAGVGLSESATALAGFANI 326

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +R +  L     T+ID++YNANP SMKAA+ VL ++       RI V+GDM E+G+
Sbjct: 327 KGRLQR-KAGLRGS--TIIDDTYNANPDSMKAALDVLVELP----APRIFVMGDMGELGD 379


>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
 gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
          Length = 473

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 192/429 (44%), Gaps = 45/429 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR   P   F  I G   DGHD+   AV++GA  V+        +  LS+PV 
Sbjct: 27  VTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQGAVAVLA----ARPLEGLSVPVL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D + AL  +A   R +S A ++ ITGS GKTT KE+L   LS   KT     + NN 
Sbjct: 83  LVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKELLAHVLSRRGKTACNALNLNNQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PL + +   D DF +FE G+SH G++  L  +++P +A+I  +  AH     G   +
Sbjct: 143 VGMPLCMLKTDGDEDFWVFEAGISHEGDMDELGAILQPDLALILNVGAAHTEGL-GERGV 201

Query: 207 ASAKAEIFEGLEKTGTIFL--NYDDSFFE---------LLKAKSHALGIKTIYSFGKSKN 255
           A  K+ +   L   G   +  +YDD   E            A    L  +  Y+ G S  
Sbjct: 202 AWHKSRLLAHLAPEGQALVSADYDDLVREARAVFGDVLFFTASGRPLSYRAAYA-GCSDG 260

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI--LTADVDTA 313
              Q R W            L G+  +V+    G +  +N +       +  LTA+   A
Sbjct: 261 VHGQYRLW------------LDGRPCDVIAPFRGDYGTENCIAVAAAAHMLGLTAEEIAA 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA---AISVLSQISPHGEGR 370
             A +   P+  R  R R    +G + ++D++YNANP SM     A +  +Q  P     
Sbjct: 309 GFADAQLPPQ--RFARSR----RGNWDIVDDTYNANPLSMARMLDAAAESAQKRPF---- 358

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            + VLG+M E+G ++   H  L   L+      V+  G H  A++D L   ++      +
Sbjct: 359 -VVVLGEMRELGGVADREHERLGRHLAQLRPVLVFWRGGHADAVRDGLEHGLYTGKFLPV 417

Query: 431 DGLFLFIQS 439
           D    F+Q+
Sbjct: 418 DSGEAFVQA 426


>gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
 gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
          Length = 434

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 207/448 (46%), Gaps = 42/448 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A++KG    +++    A  G     +   D
Sbjct: 16  VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEKEYAVEGDSRYIL--TD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L    +LA   R +    +I ITG+ GKTTTKE+++  LS         G++NN IGV
Sbjct: 74  NTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNVGRAHLLGFGSFEGVKKT 193

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------- 261
           K E+++ L E    +FLN  +S   L+K       I  + ++G+ ++A+ Q         
Sbjct: 194 KGELYDFLAENDALVFLN--ESNPHLVKMVQQR-NINRVITYGQDEDANIQGEVLSCAPF 250

Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               W++  E    EVQ Q          IG +   NML  + I      D      AL 
Sbjct: 251 LKFNWRKEGEPQLYEVQTQ---------LIGAYNIDNMLAAITIGLHFGVDPVQINHALE 301

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLG 376
            + P   R +      N+    LI ++YNANP+SM AA+       +SP     ++A+LG
Sbjct: 302 NYCPSNNRSQLTVTENNK----LIVDAYNANPSSMAAALENFKVMAVSP-----KMAILG 352

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G +S + H  +A++L   NI  VWL G      ++    + +      +D +   
Sbjct: 353 DMRELGNVSDAEHQKIADMLKECNIDKVWLVG------EEFEKTNCNFTKFHNVDEVKEA 406

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I+   + G  +++K SN    ++L  LL
Sbjct: 407 IRQENLSGYYILIKGSNGIKLFQLPELL 434


>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 164/331 (49%), Gaps = 18/331 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR I P + F A++G  +DGHDF+  A+  GA   +V+ D        +  +  VD
Sbjct: 32  LTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAGHLLQVD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A  ++A   R R    +I ITGSVGKTTTKE++   L+          +YNN IGV
Sbjct: 92  NTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLKTEANYNNEIGV 151

Query: 150 PLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P T+ ++  D  +  + E+GM   G+I  L  + +P+IAVIT +  AH+      + IA 
Sbjct: 152 PKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAE 211

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+   L  TG   LN D+     L A +  L +    ++G  +N D Q     Q  +
Sbjct: 212 AKCELLAQLSGTGLAILNADN---HRLIATAQRLNLPRCRTYGL-QNGDLQ----GQLID 263

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              + V+ Q   + +     G H A N L  L I   L  D + A + LSV  P +GR +
Sbjct: 264 LETLVVEGQRFRLPLP----GAHNALNFLAGLAIAQELGLDWE-AFRDLSVTLP-QGRAR 317

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISV 359
           R   + +     L+DE+YNA   SM AA+  
Sbjct: 318 RIELSPD---IVLLDETYNAGLESMLAALQA 345


>gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 432

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 186/386 (48%), Gaps = 26/386 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIIDEGEYAVEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  + +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  NCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263
           K E+++ L K    TIF+++D+ +   +  +   +   T   +Y  G+ + N+ +   +W
Sbjct: 194 KGELYDFLRKKENSTIFIHHDNPYLMNMSEELDRIYYGTQDGLYINGRITDNSPYLAFEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K  +      +Q Q          IG +   N L  + I      ++    +AL+ + P+
Sbjct: 254 KAGNGNEIHRIQTQ---------LIGEYNFPNALAAITIGHFFGVEMQKIDEALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382
             R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G
Sbjct: 305 NNRSQLKQTTDN----TLIIDAYNANPTSMMAALQNFRNMAVPH----KMLLLGDMRELG 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
             S   H  +   +   N   VWL G
Sbjct: 357 AESNIEHQKIVNYIKDSNFEQVWLVG 382


>gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
 gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
          Length = 431

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 212/443 (47%), Gaps = 35/443 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R +     FFA+KG ++D + F   A+  GA   +V+   +         +F VD
Sbjct: 16  VSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDKQDLPKHPQF---IF-VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +    +I +TG+ GKTTTKE++   LS   KT A +G+ NNHIGV
Sbjct: 72  DVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +H  EI  L  +  P   +IT +  AHL  F G E +   
Sbjct: 132 PLTLLAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGLITNVGKAHLEGFGGFEGVKKG 191

Query: 210 KAEIFEGLEKT-GTIFLNYDD-SFFELLKAKSHALGI-----KTIYSFGK-SKNADFQLR 261
           K E+++ L K  GT+F+N D+    E+ +++S    I        Y FGK   N  +   
Sbjct: 192 KGELYDFLSKNGGTVFINRDNLHLQEMARSRSFKEVIYYGTSSDNYVFGKLIANDPYLTV 251

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +W     +  ++ QL            G +  +N+L  + I   L        + ++ + 
Sbjct: 252 EWSDGENKDEVQSQL-----------TGIYNFENILAAIAIGKKLGLTTQQIHEGINSYK 300

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +  +   N    T+I + YNANP+SM  AI  ++++       ++ +LGDM E+
Sbjct: 301 PQNNRSQIIKTERN----TVIGDFYNANPSSMAVAIENIARLEAD---NKVLILGDMFEL 353

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           GE S + H  + E      I+ V   G      K++  +S+   + + ++ L  ++  + 
Sbjct: 354 GEESGAEHRAVIEKAEKLGIAKVLFVGQEF--FKNSNQKSV---FLKNVEELRTYLHENP 408

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
           V   ++++K S      ++I  L
Sbjct: 409 VHQALILLKGSRGMKLEQVIAYL 431


>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
          Length = 465

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 224/455 (49%), Gaps = 43/455 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR       + A +G   DGH F+  A  +GA  V+V  ++       ++P   V+D  
Sbjct: 30  DSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEV-----DEAVPQIVVEDST 84

Query: 93  GALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            AL  LA A   +LRS     +IA+TGSVGKTTTK++L   +S    T A   S+NN +G
Sbjct: 85  EALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDGPTVAPKLSFNNEVG 144

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PLT+          + E+G S  G I +LT +V P +A+   +  AH+  F G E +A+
Sbjct: 145 LPLTVLLADETTRHLVLEMGASGPGHITYLTDIVAPDVAIELCVGHAHVGGFGGFEGVAA 204

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQC 266
           AKAE+ +G    G + LN DD   E +   +    I+  +S   ++ AD   R  +  + 
Sbjct: 205 AKAELIKGTRPGGPVILNTDDPNVEAMAPLATGRVIR--FSASGNERADVVARDVRLDRA 262

Query: 267 SEQSWMEVQLQGKS---MEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              S+  V  +G++   +++V  HH      A    +TLG+     A V +  +ALS   
Sbjct: 263 DRASFTLVTPEGEAPVELKIVGRHHVANALAAAAGALTLGVGLETVASVLSRARALSPH- 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R   +   ++    TLID+SYNAN  SM+A I+ L+ I    + +RIAVLG+M E+
Sbjct: 322 ----RMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAALASIGR--DSQRIAVLGEMLEL 375

Query: 382 GELSQSFHIDLAEVLSLYNI---------SHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           GE SQS H  +  +++   +         +H +L G   +  ++          ++  D 
Sbjct: 376 GEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPEVPNREV--------AADPQDA 427

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             L ++ +  DG VV+VK S     +++ ++L E+
Sbjct: 428 ARLALEHA-EDGAVVLVKGSFGSQSWQVADILREK 461


>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 511

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 212/489 (43%), Gaps = 52/489 (10%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA------------GLVV 69
           P   V G +  DSR +AP   F    G   DGHDF   A+++GA             +VV
Sbjct: 23  PDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAEKAIEQGAVAVLAAREVGVPAIVV 82

Query: 70  VNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSK--ATIIAITGSVGK 119
             T  +   G+ +  ++  D       V+ AL+ LA  V  +L S+   +II +TGS GK
Sbjct: 83  QPTGRIEGDGA-NADIYANDADGSAAAVVRALSDLAHYVTTKLTSEHDLSIIGVTGSAGK 141

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   L +  +T A  GS+NN IG P T  R  VD  + + EL    +G I+ LT
Sbjct: 142 TSTKDLIATILRNDGETVAPPGSFNNEIGHPYTALRCDVDTKYLVAELSARGIGHIKHLT 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLK 236
            +  P I V+  +  AHL  F   E IA AK E+ E L    + G   LN DD F   + 
Sbjct: 202 DIATPRIGVVLNVGTAHLGEFGSRENIAIAKGELVESLPDVSEGGVAVLNADDPFVAAMA 261

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            ++ A  +    +   +  AD+          +  S+       K + V     G H   
Sbjct: 262 KRTTAKVVTYSSANPPAVGADYYATNITLDNVARPSFTLHAPGVKPVSVTLQVFGVHQVS 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L            V++   +LS    +     R          T+I++SYNANP SM+
Sbjct: 322 NSLAAAAAAIEAGLSVESVADSLSGH--RNASAHRMDVHTRADGVTIINDSYNANPDSMR 379

Query: 355 AAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-- 411
           AAI+ L    S   + R IAVLG+M E+G+ +   H  L   L+ +++  + + G     
Sbjct: 380 AAIAALGYTTSGRPDARSIAVLGEMGELGDDAIEEHYSLGAELAKFDVHTLIVVGETANG 439

Query: 412 -LALKDALPRSIHVHYSETMDGLFLFIQSSLVD-------------GDVVVVKSSNSCGF 457
                 A  R I+   S  +D     I+  L                DVV+VK+SN+   
Sbjct: 440 EAMASAAAERGINTMVSRDIDEAIWHIEDVLNTPPAGVEDWSAREMKDVVLVKASNAQRL 499

Query: 458 Y----RLIN 462
           +    RL+N
Sbjct: 500 WLVSERLLN 508


>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
 gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
          Length = 465

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 27/447 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR       + A +G   DGH F+  A  +GA  V+V  ++  ++  +      V+D  
Sbjct: 30  DSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVDEAVTQIV-----VEDST 84

Query: 93  GALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            AL  LA A   +LRS     +IA+TGSVGKTTTK++L   +S    T A   S+NN +G
Sbjct: 85  EALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDGPTVAPKLSFNNEVG 144

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PLT+          + E+G S  G I +LT +V P +A+   +  AH+  F G E +A+
Sbjct: 145 LPLTVLLADETTRHLVLEMGASGPGHITYLTDIVAPDVAIELCVGHAHVGGFGGFEGVAA 204

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQC 266
           AKAE+ +G    G + LN DD   E +   +    I+  +S   ++ AD  +R  +  + 
Sbjct: 205 AKAELIKGTRPGGPVILNTDDPNVEAMAPLATGRVIR--FSASGNERADVVVRDVRLDRA 262

Query: 267 SEQSWMEVQLQGKS---MEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              S+  V  +G++   +++V  HH      A    +TLG+     A V +  +ALS   
Sbjct: 263 DRASFTLVTPEGEAPVELKIVGRHHVANALAAAAGALTLGVGLETVASVLSRARALSPH- 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R   +   ++    TLID+SYNAN  SM+A I+ L+ I    + +RIAVLG+M E+
Sbjct: 322 ----RMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAALASIGR--DSQRIAVLGEMLEL 375

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSS 440
           GE SQS H  +  +++   +  +   G       +  P   H    ++  D   L ++ +
Sbjct: 376 GEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPEVPHREVAADPQDAARLALEHA 435

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
             DG VV+VK S     +++ ++L E+
Sbjct: 436 -EDGAVVLVKGSFGSQSWQVADILREK 461


>gi|319795793|ref|YP_004157433.1| mur ligase middle domain protein [Variovorax paradoxus EPS]
 gi|315598256|gb|ADU39322.1| Mur ligase middle domain protein [Variovorax paradoxus EPS]
          Length = 1028

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 184/385 (47%), Gaps = 14/385 (3%)

Query: 83   IPVFGVDDVLGALNKLAVAARLRSKATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  V +VL A+ +L   AR      +  + G   G +T   M+  AL+   +     G
Sbjct: 651  VPVLKVPNVLQAVLQLGEHARTEFTGRVCGVLGHGTGSSTVAAMMAGALTVWGEVGQPEG 710

Query: 142  SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            + +   G+   L  MP    + + E+G SH+      + LVRP + V+T ++ A   +  
Sbjct: 711  NISLPSGIAWNLTCMPRHAAYWVLEMGTSHMPAS---SQLVRPSLVVVTGLSAASQKHRG 767

Query: 202  GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQ 259
              +  A   A IF+G+     + LN D   F +    A +H L I T   +G+ ++AD +
Sbjct: 768  PSDAAARMDARIFQGMAAGDNVVLNRDMPEFPIFAEAATAHQLQIVT---YGEHEDADVR 824

Query: 260  LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            L  +     Q+    Q+ G+  ++  +  G HM    +  LG +  L   +  A++  + 
Sbjct: 825  LLAFDHGEVQA----QVAGEPFQLRLNAPGRHMGAAAVAALGALQSLRLPLAAAVEPFAH 880

Query: 320  FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
            F P  GRG  +   +  G F LIDE+Y+ANP+SM+AA+ +LSQ +P    RR+A+LGDM 
Sbjct: 881  FEPPGGRGALHTIHIGGGSFKLIDETYDANPSSMRAALELLSQ-APCEPARRVAILGDMQ 939

Query: 380  EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            E+G  +Q  H+DL   L       V L G  + AL  ++   +  H+   +  L   +  
Sbjct: 940  ELGPAAQRHHLDLEAELLASQPDRVLLCGPLMRALHASIRTKVRSHWFVDVSDLSTALGG 999

Query: 440  SLVDGDVVVVKSSNSCGFYRLINLL 464
             L  GD V+ KSS   G  RL  +L
Sbjct: 1000 LLQPGDWVLAKSSAGVGLSRLARVL 1024


>gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
 gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
          Length = 439

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 182/390 (46%), Gaps = 27/390 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       FFA+KG  +DG+ F   A++KG    V++    A  G+  + +  VD
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNGRLIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL    +LA   R R    +I ITG+ GKTTTKE++   L          G++NN +GV
Sbjct: 74  NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------- 261
           K E+++ LE   G +FLN  +     + A+ +      I S+G+ +  + +         
Sbjct: 194 KGELYDFLESHDGLLFLNESNPDLMEMAAQRN---FGRIISYGRDEGGNVEGEVIDCSPF 250

Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              +W+Q         Q+   + EV  H IG +   NML  + +             AL 
Sbjct: 251 LNFRWRQHLHAG----QIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALG 306

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +      N+    LI ++YNANP+SM AAI     +      R++A+LGDM
Sbjct: 307 HYIPSNNRSQLETTEHNR----LIVDAYNANPSSMAAAIDNFKLMKAE---RKMAILGDM 359

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            E+G +S   H    + L+   I  VWL G
Sbjct: 360 LELGAVSDEEHQKTVDALAAAGIKEVWLVG 389


>gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112]
 gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
          Length = 452

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 189/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  +     +V+    L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQDLDIPQI 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRVT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSFAVKIRIFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     LN    TL+D++YNA+  +++AAI  L +     +G+R+  +  M E+G+ ++
Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLDEF----DGKRVIAITSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  V+L G
Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387


>gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
 gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
          Length = 494

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 227/479 (47%), Gaps = 44/479 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---- 78
           P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA   +V   +  ++    
Sbjct: 23  PRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLA 82

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             L   V  V D   A+  +A   R      +IA+TGS GKTTTK ++   L+S   T A
Sbjct: 83  AELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP TL     D    + E+GM   G++  L   VRP   ++  +  +H+ 
Sbjct: 143 TAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVVNVGESHIE 202

Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGK--- 252
                E IA AKAE+   L E TG  F+N DD + + ++  A+  A  ++T+   G    
Sbjct: 203 LLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETVLFDGSAAA 262

Query: 253 ----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY------HMAQNMLMTLGI 302
               ++    Q  +    +EQ  +E+  QG+    + H +G+        A+  L   G+
Sbjct: 263 AERRAQADAAQTARPAVWAEQ--VELDEQGRPRFRL-HAVGFADAPEEETARCALTLRGL 319

Query: 303 VSILTADVDTAI------------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            ++  A   TA+             AL+   P+ GR +  R    +G FT+++++YNANP
Sbjct: 320 HNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRA---RGGFTVVNDAYNANP 376

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  +   +  +   G  
Sbjct: 377 DSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCVGEL 434

Query: 411 VLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            L + DA  R+      +  + ++  +F  + + +  GD V+VK+S+  G  R++  L+
Sbjct: 435 SLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHFMGLTRVVEGLV 493


>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
 gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
          Length = 468

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 183/415 (44%), Gaps = 45/415 (10%)

Query: 17  HSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
            +  ++P   V G        +S DSRS+   + F A+KG  +D HDF+     +GA   
Sbjct: 8   QAAALIPGAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAA 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT- 127
           +V+ +   +    S+P   V D    L  LA   R R    ++A+TGS GKTT KEM+  
Sbjct: 68  LVSREGAPA----SLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIAS 123

Query: 128 --IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              A   I    +  G++NN IG+PLTL R+       + ELGM+H GE + L  +  P 
Sbjct: 124 IFAAAVGIDARLSTAGNFNNDIGLPLTLLRLSAAHRLAVIELGMNHPGETQTLAKIAAPT 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++      H    + +E +A   A +   L   G      DD +              
Sbjct: 184 VALVNNAQREHQEFMATVEAVALEHASVIHALAPDGVAVFPADDKY-------------A 230

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQN 295
            I+    + NA  DF L    + +  +         + ++      EV    +G H A+N
Sbjct: 231 GIWRVAATGNAILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMK 354
            L            ++     L  F P +GR +  R A+       LID++YNANP SM+
Sbjct: 291 ALAAAAAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMR 350

Query: 355 AAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AAI VL+ Q SP     R+ V+G+M E+G+   +FH ++        I  ++ +G
Sbjct: 351 AAIDVLAQQASP-----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATG 400


>gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
 gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
          Length = 432

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 211/444 (47%), Gaps = 36/444 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I +  VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260
           K E+++ L  ++  T+F+++D+++   L   +H L +       ++Y  G  + N+ +  
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLT 250

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +WK   +    +VQ Q          IG +   N L  + I      +     +AL+ +
Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P+  R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E
Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---KKMLILGDMRE 354

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  S + H  + + L   +   V L G    A     P   + +  E +  L    Q+ 
Sbjct: 355 LGTESAAEHRKIVDFLQECSFEKVLLVGEQFTATHP--PYHTYANAQEVIKEL----QTE 408

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
                 +++K SN      ++  L
Sbjct: 409 KPKDYTILIKGSNGIKLNTVVEFL 432


>gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
 gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
          Length = 459

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 197/410 (48%), Gaps = 37/410 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           +N IS++S+     + F AI+G    G+++I  A++KGA  V  N   D+     +    
Sbjct: 23  INKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYAVYDNAHADIKEEYKN---K 75

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            F V+D +  L K A   R      +I ITGS GKTT K++    LSS  K     G+YN
Sbjct: 76  TFFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGNYN 135

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL R+  D  F I E+GMS  GEI  L  +  P I++IT I  +HL      E
Sbjct: 136 NHIGLPFTLLRLEKDDKFIILEMGMSGFGEIELLGKISNPDISIITNIGESHLEFLHTKE 195

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN---ADFQL 260
            +  AK E+    ++   + +N DD + + +   S    +KTI    K SKN   ++F  
Sbjct: 196 NVFKAKTELLPYTKE--VLIINGDDDYLKNINESS----LKTIKVLRKDSKNIEKSNFYY 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVS---ILTADVD 311
                  + S   ++   K  E           +G H   N+ M + +     I   D++
Sbjct: 250 GNINFDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNILNLTMAIAVAKQFGIEDKDIE 309

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +K + +         R++    +G    I+++YNA+PASMK ++   S+I  + +  +
Sbjct: 310 ETVKNIKLTDM------RFQIT-EKGNTIYINDAYNASPASMKKSLETFSEI--YNDRMK 360

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           IAVLGDM E+GE     H D+ E L    ++ ++L G  + +L D + + 
Sbjct: 361 IAVLGDMLELGENELELHSDIYETLRNIKLNKLYLFGERMKSLYDRVKKE 410


>gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 638R]
          Length = 432

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 193/388 (49%), Gaps = 30/388 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I +  VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260
           K E+++ L  ++  T+F+++D+++   L   +H L +       ++Y  G  + N+ +  
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLT 250

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +WK   +    +VQ Q          IG +   N L  + I      +     +AL+ +
Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P+  R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E
Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---KKMLILGDMRE 354

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G  S + H  + + L   +   V L G
Sbjct: 355 LGTESAAEHRKIVDFLQECSFEKVLLVG 382


>gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL060PA1]
          Length = 485

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 207/480 (43%), Gaps = 63/480 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSI---------------LTADV 310
           +        L   S  +    G     +   LMT+G   +               +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAAWAMNDDI 317

Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363
           D        +ALS    +     R +         L+++ YNANP SM A+++ +  +  
Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
              +   + R +AVLGDM E+G+ S   + +     S    +H   +GF V +A+ D   
Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE-----SGRRAAH---AGFDVIIAVGD--- 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG---------DVVVVKSSNSCGFYRLINLLLEEFPA 470
            + ++      +G  + + S++ D          DVV++K+S      R+   + EE  A
Sbjct: 425 EAKNIAEGARAEGARVIV-STVEDASGSLGWTSHDVVLLKASRGLALERVGRDVFEEREA 483


>gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
          Length = 509

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 221/499 (44%), Gaps = 52/499 (10%)

Query: 14  IQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA----- 65
           I G S+  V  P   V G I  DSR +     F A+ G   DGHD+   A+++GA     
Sbjct: 12  ITGGSLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAIEQGAVAVLA 71

Query: 66  ------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA--T 109
                   VVV      +  + +  ++  D+      V+ AL+ +A  V  RL ++    
Sbjct: 72  ARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTRRLTAEQGLD 131

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ +TGS GKT+TK++L     +   T A  GS+NN +G+P T  R      F + E+  
Sbjct: 132 IVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCDEHTRFLVAEMSA 191

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLN 226
             +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L      G   LN
Sbjct: 192 RGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPSAAEGGVAVLN 251

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSME 282
            DD F   +  ++ A  +   YS  K   +D Q      +    +  S++        + 
Sbjct: 252 ADDPFVAGMAPRTSAKVV--YYSANKPPASDAQYYASDIQLDDVARPSFVLHAPGTDPLP 309

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L      + + + +D  + A ++   +     R      +   T I
Sbjct: 310 VKLQVFGKHQVSNALAAA--AAAIESGMDPQVVANALSGHQNASEHRMDVRTRRDGVTTI 367

Query: 343 DESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           D+SYNANP SM AAI+ L+  S    + R IAVLG+M E+G  + + H  L EVLS Y++
Sbjct: 368 DDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAVAAHRALGEVLSKYHV 427

Query: 402 SHVWLSGFH---VLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVD------GD 445
            H+   G +      ++ A  R I+   S         ++ +     + + D       D
Sbjct: 428 DHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRVAPAGIEDWTGREAKD 487

Query: 446 VVVVKSSNSCGFYRLINLL 464
           VV++KSSN+   +R+   L
Sbjct: 488 VVLIKSSNAQRLWRVAEQL 506


>gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 426

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 196/387 (50%), Gaps = 27/387 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  +S+ +     F A+KG ++DG+ F   A+  GA + +V+   V S       +  V
Sbjct: 5   GIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFSCR----KIIYV 60

Query: 89  DDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNH 146
           DD L  L KLA+  R + +   IIAITGS GKTTTKE+    LS   +K +    + NNH
Sbjct: 61  DDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKNNLNNH 120

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  MP++    + E+G +H  EI  +  +++P    IT    AHL  F  IE I
Sbjct: 121 IGIPLTILSMPINTQISVIEIGANHEKEIDKMCSIIKPDYGYITNFGKAHLEGFKSIEGI 180

Query: 207 ASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRK-W 263
              K E++  L+K    +F+N DD   +L K    ++G+K  I+S  + K ++ +++  W
Sbjct: 181 IRGKLELYNFLKKNKKVVFVNGDDP-IQLDK----SIGMKRYIFSEKEDKKSNVKIKYLW 235

Query: 264 KQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            Q  C  +S + V     + ++    IG +   N+   + I       ++   KA+  + 
Sbjct: 236 NQVGCDLKSILYVD----NTKISSSLIGNYNLYNIASAISIGKYFKISLEKIKKAVEEYI 291

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           PK  R +     +N+    +I + YNANP SM   I  L+  + + +G +IA+LGDM E+
Sbjct: 292 PKNHRSQ----IMNKKNTKIIIDCYNANPTSM---IKALTFFNNNIKGNKIAILGDMLEL 344

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           G  S   H  +   +   NI+  +L G
Sbjct: 345 GFYSNHEHEKIIFFIEKSNINTTFLIG 371


>gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA1]
 gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA1]
 gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA2]
 gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA2]
 gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA1]
 gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA1]
 gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA2]
 gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA1]
 gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA2]
 gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA1]
 gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA2]
 gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL086PA1]
 gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA4]
 gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA1]
 gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA3]
 gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA3]
 gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL067PA1]
 gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA1]
 gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA1]
 gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA2]
 gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA1]
 gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA1]
 gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA2]
 gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA2]
 gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA3]
 gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL078PA1]
 gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA2]
 gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA3]
 gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA1]
 gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA2]
 gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA1]
 gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA2]
 gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL097PA1]
 gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA3]
 gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA2]
 gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA3]
 gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL092PA1]
 gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA2]
 gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA1]
 gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL020PA1]
 gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA2]
 gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes 266]
          Length = 485

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 203/481 (42%), Gaps = 65/481 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317

Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363
           D  T  +          R   R +         L+++ YNANP SM A+++ +  +    
Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLATR 377

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
               P   G  +AVLGDM E+G+ S   + +   +      +H   +GF V +A+ D   
Sbjct: 378 RVRDPQTRG--VAVLGDMLELGQDSARLNAESGRL-----AAH---AGFDVIIAVGD--- 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG----------DVVVVKSSNSCGFYRLINLLLEEFP 469
            + ++      +G  + +  S V+G          DVV++K+S      R+   + EE  
Sbjct: 425 EAENIAEGARAEGARVIV--STVEGASGSLGWTSHDVVLLKASRGLALERVGREVFEERE 482

Query: 470 A 470
           A
Sbjct: 483 A 483


>gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
 gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
          Length = 479

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 203/464 (43%), Gaps = 35/464 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-----------SI 78
           +  D+R + P   F A+ G   DGHDF   AV+ GA  V+   ++ A             
Sbjct: 5   VEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQA 64

Query: 79  GSLSIPVFGVDDVLGALNKLA-------VAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
            S S+ + G  D  GA    A       V  RL +   T+I +TGS GKT+TK+++   +
Sbjct: 65  NSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAGGLTVIGVTGSSGKTSTKDVIAQLI 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +  T A  GS+N+ +G P T  R      F + E+    +G I        P I  + 
Sbjct: 125 EPMGPTVAPPGSFNSELGHPWTALRADASTKFLVLEMSARGVGHIAAAAETTPPRIGAVL 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH+  F   E IA AK E+ E L + G   LN DD     + +++ A     I   
Sbjct: 185 NVGSAHVGEFGSREGIAKAKGELVEALPEDGLAVLNLDDPLVAAMASRTKA----RIVGV 240

Query: 251 GKSKNADFQLRKWKQCSE--QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILT 307
           G+S  A  +       +E   S+  +  +G++ + +  H  G H   N L    I   L 
Sbjct: 241 GESAGAQIRAADITVDAEARPSFRLITPEGEAPVTLPLH--GEHHVGNALSAAAIARELG 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  +   + LS    +  R  R          T++++SYNANP S++A +  L+ +S  G
Sbjct: 299 ATTEEIAQRLSSLQRRSER--RMEVTTRADGVTILNDSYNANPESVRAGLKALASMSRSG 356

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHY 426
             R  AVLG M E+GE S + H  +  ++   NI  + + G    A+ + A         
Sbjct: 357 R-RAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQEAAAMHQGAFQEGSWGEE 415

Query: 427 S---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S     ++     +   L  GDVV+VK+S + G +R+   LL +
Sbjct: 416 SVLVPDVEAAVAVLHDQLRPGDVVLVKASKAAGLWRVAEALLAD 459


>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 482

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 21/455 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +GA  V+V+    A++    
Sbjct: 26  PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAALDLSG 85

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139
           + V  V D   AL +LA   R +    ++A+TGS GKTT KEM++   +         A 
Sbjct: 86  VAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFACAVGEDARLAT 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I      H   
Sbjct: 146 AGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLATIAQPTVALINNAQREHQEF 205

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255
              +E +A+  A +   L   G      D +    +  L +A   A G + +  FG    
Sbjct: 206 MVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLDFGIEGG 262

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A          ++   ++V   G     +   +G H A+N L             +   +
Sbjct: 263 AVSA--TVTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNALAATACALAAGIAPEVIAQ 320

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           ALS F P +GR +R +  ++ G   +ID++YNANP S++AAI  L+ +       R  VL
Sbjct: 321 ALSAFAPVKGRLQR-KPGVHGGL--VIDDTYNANPDSVRAAIDALATLP----APRWLVL 373

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G    +FH ++        I  V  +G     + DA       H++ + + L  
Sbjct: 374 GDMGEVGAQGPAFHQEIGAYARERGIDAVLATGELARHVVDAFGGGAR-HFA-SAEALIE 431

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               ++  G  V+VK S      R+++ L+ + PA
Sbjct: 432 QGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
 gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
          Length = 477

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 190/401 (47%), Gaps = 30/401 (7%)

Query: 2   NPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + L +  ++L+A+ G H +G  P   +  +  DSR +     F  + G + DGH ++  A
Sbjct: 5   DSLLSLEEILEAVNGVHVLGNSPL-CIKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQA 63

Query: 61  VQKGAGLVVVNTDMVASIGSL---------SIPVFGVDDVLGALNKLAVAARLRSK---A 108
           ++KGA +V ++     + G+          S+    V++ L AL K   AAR   K    
Sbjct: 64  IEKGASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQK--SAARYVEKFPHL 121

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             I +TGS GKTTTKE+L   LS   K  +  G+ N+  G+PL++  +  + + G+FE+G
Sbjct: 122 IKIGVTGSSGKTTTKEILVSILSQKYKVISNKGNLNSETGLPLSVFNIRAEHECGVFEMG 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           M+   EI  +  +++P  AV+T I  AH+      E IA  KA+IF      GT  +  D
Sbjct: 182 MNRENEIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYFGGFGTGVIPVD 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D F + LK   + +  K ++ +G   ++       K   +      +     +E +    
Sbjct: 242 DEFSDFLK---NEIDGKVVF-YGNDTDS------VKYICDMGLKGTKFSIDGIETILPLP 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +  ++ L  + +  +L          +S   P  GR +     L+   F ++ + YNA
Sbjct: 292 GKYNYKDALGAIALAQVLGLSSRQISDGISSLKPLSGRSE----ILDGKNFLIMQDCYNA 347

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           NP SM+ AI  +  +    + ++I VLGDM E+G  S+S H
Sbjct: 348 NPDSMEKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAH 388


>gi|239817426|ref|YP_002946336.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239804003|gb|ACS21070.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1024

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 180/383 (46%), Gaps = 10/383 (2%)

Query: 83   IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS-VGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  VDDV  A+  L   AR      +  + GS    +T   ML  AL+   +     G
Sbjct: 647  VPVLQVDDVPQAVLALGAHARTEFTGRVCGVLGSGTAGSTVAAMLADALAVWGEVGRPEG 706

Query: 142  SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            + +   G+   L  MP    + + E+G  H+        LVRP +AV+T ++ A   +  
Sbjct: 707  NVSLPSGMAWNLTCMPRHAAYWVLEMGSPHMLAT---AQLVRPMLAVVTGLSAASQKHRG 763

Query: 202  GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              E  A   + IFEG+    +  LN D   F      + A  ++ I ++G+ K+AD +L 
Sbjct: 764  PSEAAAHMDSRIFEGMAPGDSAVLNRDLPEFATFAEAAMAHQLQ-IVTYGEHKDADVRLL 822

Query: 262  KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +     Q+    Q+ G+  ++  +  G HM  + +  L  +  +   +  A++  + F 
Sbjct: 823  SFDHGEVQA----QVLGEPFQLRLNAPGRHMGASAVAALAALQAMRLKLAAAVEPFAQFE 878

Query: 322  PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            P  GRG  +   +  G F LIDE+Y+ANP+SM+AA+ +LSQ +P    RR+A+LGDM E+
Sbjct: 879  PPGGRGALHTIHIGGGSFKLIDETYDANPSSMRAALELLSQ-APCEPARRVAILGDMQEL 937

Query: 382  GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            G  +Q  H+DL   L       V L G  + AL   +   +  H+   +  L   +   L
Sbjct: 938  GPAAQRHHLDLEPELLASQPDRVLLCGPLMRALHARIRTKVRSHWFVDVSDLSTALGGLL 997

Query: 442  VDGDVVVVKSSNSCGFYRLINLL 464
              GD V+ KSS   G  RL  +L
Sbjct: 998  QPGDWVLAKSSAGVGLSRLARVL 1020


>gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 509

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 138/488 (28%), Positives = 216/488 (44%), Gaps = 50/488 (10%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-----------GLVVV 70
           P   V G I  DSR +     F A+ G   DGHD+   A+++GA             VVV
Sbjct: 23  PDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAIEQGAVAVLAARPVGVPAVVV 82

Query: 71  NTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA--TIIAITGSVGKT 120
                 +  + +  ++  D+      V+ AL+ +A  V  RL ++    I+ +TGS GKT
Sbjct: 83  KPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTRRLTAEQGLDIVGVTGSAGKT 142

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK++L     +   T A  GS+NN +G+P T  R      F + E+    +G IR LT 
Sbjct: 143 STKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCDEHTRFLVAEMSARGIGHIRHLTT 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKA 237
           +  P + V+  +  AHL  F   E IA AK E+ E L      G   LN DD F   +  
Sbjct: 203 ITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPSAAEGGVAVLNADDPFVAGMAP 262

Query: 238 KSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           ++ A  +   YS  K   +D Q      +    +  S++        + V     G H  
Sbjct: 263 RTSAKVV--YYSANKPPASDAQYYASDIQLDDVARPSFVLHAPGTDPLPVKLQVFGKHQV 320

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L      + + + +D  + A ++   +     R      +   T ID+SYNANP SM
Sbjct: 321 SNALAAA--AAAIESGMDPQVVANALSGHQNASEHRMDVRTRRDGVTTIDDSYNANPDSM 378

Query: 354 KAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-- 410
            AAI+ L+  S    + R IAVLG+M E+G  + + H  L EVLS Y++ H+   G +  
Sbjct: 379 HAAIAALAYTSAARPDARAIAVLGEMGELGGEAVAAHRALGEVLSKYHVDHLVAVGDNDN 438

Query: 411 -VLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVD------GDVVVVKSSNSCG 456
               ++ A  R I+   S         ++ +     + + D       DVV++KSSN+  
Sbjct: 439 MRAMVEAAQARGINTTISPDVDAAAAAVEDIIRVAPAGIEDWTGREAKDVVLIKSSNAQR 498

Query: 457 FYRLINLL 464
            +R+   L
Sbjct: 499 LWRVAEQL 506


>gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
 gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
          Length = 500

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 215/490 (43%), Gaps = 45/490 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL------ 58
           T  ++   + G  +G  P   V G +  DSR + P   F A+ G   DGHDF+       
Sbjct: 5   TLGEIAGIVGGRLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVARALDAG 64

Query: 59  -------HAVQ--KGAGLVVVNTDMVASIG-SLSIPVFGVDD-VLGALNKLAVAARLRSK 107
                  H V    GA +VV   D   +   +L+    G    VL AL  LA A+  R  
Sbjct: 65  AAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAVLTALGALARASVDRLV 124

Query: 108 A----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           A     ++ +TGS GKT+TK+++   LS+     A  GS+NN IG P T  R   D DF 
Sbjct: 125 ADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALRADEDTDFL 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--- 220
           + EL     G IR L  L  P I V+  +  AHL  F   E IA+ K E+ E L      
Sbjct: 185 VLELSARAPGNIRELAALAPPRIGVVLNVGTAHLGEFGSREVIAATKGELVEALPDAAHG 244

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQG 278
           G   LN DD     +  ++ A     + + G   +AD +    +   E   S+  V  +G
Sbjct: 245 GVAVLNADDDRVAAMAGRTSA----EVVTVGLGGSADVRAEGVRLDDEVRASFTLVTPRG 300

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           ++ EV     G H   N L    +      DV+    AL        R  R    +    
Sbjct: 301 EA-EVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAEAASER--RMDVRVTADG 357

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEV 395
            T+I++SYNANP SM+AA+  L+ ++  G G   R  AVLG+M E+GE +   H  +   
Sbjct: 358 ITVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAELGEDAVIEHDLIGRF 417

Query: 396 LSLYNISHVWLSGFHVL-------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L   ++S + + G           A+++    S   H + T +     + S L  GD+V+
Sbjct: 418 LVRLDVSQLVVVGLGRPQRAMFQGAIQEGSWGSEAEHVA-TAEEAVEILDSRLEPGDIVL 476

Query: 449 VKSSNSCGFY 458
           VK+S + G +
Sbjct: 477 VKASAAVGLW 486


>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 454

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 204/473 (43%), Gaps = 38/473 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  +L  A  G  +G  P+      V  I  DSR       F  IKG   D HDFI   +
Sbjct: 5   TLKNLALACNGTYVG--PKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQVM 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +K     +   D+    G    P   V   L A+  +A     + +  ++ ITGSVGKT+
Sbjct: 63  EKAVLATLSEKDL----GEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVGKTS 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   L+    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L  +
Sbjct: 119 TKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP+  VIT I   HL      + I  AK EIF+ L+    I LN DD   + L      
Sbjct: 179 ARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDD---DKLVTVQET 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWK-------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            GIK ++ FG   +      K K        C   +  E      S  V+    G H   
Sbjct: 236 KGIKPVF-FGVENHQGIWADKIKPEGLKGISCCIHAGEE------SFSVLIPVPGKHSVY 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +       ++   K +       GR       +    +T+ID+ YNANP SMK
Sbjct: 289 NALAATAVGLTYGLTIEEIRKGIESLQSVSGRFH----IIEAPNYTVIDDCYNANPISMK 344

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A++ VL+       GR++A+LGDM E+G   +  H ++ +  +   I  +   G     +
Sbjct: 345 ASLDVLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDM 400

Query: 415 KDA---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            DA   +     V +    + L   +   L  GD V+VK+S+   F  ++  L
Sbjct: 401 ADAAGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453


>gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9605]
 gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9605]
          Length = 449

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 204/448 (45%), Gaps = 29/448 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  +  DSR +   + F  + G  +DGH F+    +  A   VV+      +    
Sbjct: 22  PDALLGRVCTDSRQLQAGDFFVPLVGERFDGHHFLEQLPEHKAQAAVVSRCWAEPLPP-D 80

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  + VDD L A  +LA+  R      ++A+TGS GKTTT+E++  AL+ +    A  G+
Sbjct: 81  LLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPLGAIQASEGN 140

Query: 143 YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            NN +GVPLT L     D    + E+GM  LGEI  L++   P +AVIT I  AH+    
Sbjct: 141 NNNDVGVPLTVLGATAADAAL-VIEMGMRGLGEIERLSYCTEPDLAVITNIGTAHIGRLG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADF-- 258
             E IA+AK EI  GL   GT+ +   D   E  L A      ++   +      +D   
Sbjct: 200 SREAIAAAKCEITAGLHPQGTVVIPAGDPLLESALSAVWSGRVLRVRLADDPEVESDLVG 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   +   +   + +QL+G+           H A+N+L+ + +   L      A++A+ 
Sbjct: 260 DINGDQLLIDADRLPLQLEGR-----------HNARNLLLAVAVADQLGVS-RRALQAIQ 307

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V  P  GR +R    L QG  TL+DE+YNA+P     A   L    P   GRR AVLG M
Sbjct: 308 VTVPG-GRNRR----LQQGGLTLLDETYNASP-EAVLAALDLLAAQP---GRRFAVLGTM 358

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            E+G+ S   H ++A       +  + L   G    A+ +      H+      +     
Sbjct: 359 LELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAASLPHLQLVSNPEDAAAP 418

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + + L  GD +++K+S      RL+ LL
Sbjct: 419 LAAWLEAGDFLLLKASRGVALERLMPLL 446


>gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA1]
          Length = 485

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 168/389 (43%), Gaps = 37/389 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317

Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363
           D  T  +          R   R +         L+++ YNANP SM A+++ +  +    
Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLATR 377

Query: 364 -SPHGEGRRIAVLGDMCEMGELSQSFHID 391
            +   + R +AVLGDM E+G+ S   + +
Sbjct: 378 RARDPQTRGVAVLGDMLELGQDSARLNAE 406


>gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 452

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 19/383 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  ++V+         L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGTLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEG 325
           S     ++++  +  +     IG H   N+L + L I S++   ++      +  + K  
Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKH---NLLNSVLAIASVVAVGLEPKDFLQNTQNIKNY 309

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           +G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ +
Sbjct: 310 KG-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEA 364

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
           +++H  + + L   N+  ++L G
Sbjct: 365 ENYHRKMGQWLKKANLDKIFLFG 387


>gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
 gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 464

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 203/427 (47%), Gaps = 33/427 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI+    +G+ ++  A++KGA +V+ +             V 
Sbjct: 58  IQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEKGASIVIADHYFEPHE-----RVI 108

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  + +LA   R   K  +IAITGS GKTTTK+++   LS    T   +G+YNNH
Sbjct: 109 SVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTFPTKKTLGNYNNH 168

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +HL      E +
Sbjct: 169 IGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENV 228

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+   L + G    + DD F   LK  S   G+   Y  G     D+++  +++ 
Sbjct: 229 FKAKTELLPYLPQ-GHFITSGDDIF---LKKVS---GVHVGYEEGN----DYRIVSYRK- 276

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            ++     Q++GK  E+     G H   N  M + +  ++    +   + LS       R
Sbjct: 277 -KERMTSFQVRGKDYEICLE--GKHNVMNAAMGIALAEMIGMKPEEIQRNLSQIELSPMR 333

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R+     +     I+++YNA+P SM AA+  L ++      R+ AVLGDM E+GE   
Sbjct: 334 FERFEYRGTE----YINDAYNASPISMFAALDSLEEMKAE---RKFAVLGDMLELGEREI 386

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            FH ++ +     ++  V L G  +      LP    +++ E+ + +  +++        
Sbjct: 387 EFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEGLYHFESKEAIREYLRK--FSEKT 444

Query: 447 VVVKSSN 453
           V++K+S 
Sbjct: 445 VLIKASR 451


>gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 426

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 207/428 (48%), Gaps = 35/428 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI+    +G+ ++  A++KGA +V+ +             V 
Sbjct: 20  IQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEKGASIVIADHYFEPHE-----RVI 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  + +LA   R   K  +IAITGS GKTTTK+++   LS    T   +G+YNNH
Sbjct: 71  SVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTFPTKKTLGNYNNH 130

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +HL      E +
Sbjct: 131 IGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENV 190

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+   L + G    + DD F   LK  S   G+   Y  G     D+++  +++ 
Sbjct: 191 FKAKTELLPYLPQ-GHFITSGDDIF---LKKVS---GVHVGYEEGN----DYRIVSYRK- 238

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            ++     Q++GK  E+     G H   N  M + +  ++    +   + LS       R
Sbjct: 239 -KERMTSFQVRGKDYEICLE--GKHNVMNAAMGIALAEMIGMKPEEIQRNLSQIELSPMR 295

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R+     +     I+++YNA+P SM AA+  L ++      R+ AVLGDM E+GE   
Sbjct: 296 FERFEYRGTE----YINDAYNASPISMFAALDSLEEMKAE---RKFAVLGDMLELGEREI 348

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            FH ++ +     ++  V L G  + LAL + LP    +++ E+ + +  +++       
Sbjct: 349 EFHKEVIQKAMSCHLQAVLLYGTRMKLALHE-LPFHEGLYHFESKEAIREYLRK--FSEK 405

Query: 446 VVVVKSSN 453
            V++K+S 
Sbjct: 406 TVLIKASR 413


>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
 gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
          Length = 468

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  D+R++     + A++G  +D H F   AV +GA  V+V+      +  L +P  
Sbjct: 24  VRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141
            V D   AL  +A A +    + ++A+TGS GKT+ K ML       A  S    YA  G
Sbjct: 80  VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYANSG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P D DF ++E+G   LG+I +LT +V P +A++  IAPAHL    
Sbjct: 140 NRNNEIGLPLAVIAAPDDADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A  K EI+  L   GT  +N DD+F    + +    G   +  FG    AD    
Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADITAY 258

Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              Q SE S  ++ V  QG+ + V     G H   N L    +  +    +      L +
Sbjct: 259 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLPQIAAGLGL 316

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR   +      G   LID+SYNANP S+  AI  L+  +    G    VLGDM 
Sbjct: 317 ARSVPGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTTAA----GPGWLVLGDMR 369

Query: 380 EMG 382
           E+G
Sbjct: 370 ELG 372


>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
 gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
          Length = 468

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 179/413 (43%), Gaps = 26/413 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           W F  +  A+    I  V QG       V  I  DSR +   + F  + G  +D HDF  
Sbjct: 6   WAFEHIATALSKLLIAQVNQGVPELPSAVRLIQTDSRLVEKGDLFVCLIGERFDAHDFAG 65

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++ GA  +V N      +  L I  F V+D   AL  LA A R +    ++A+ GS G
Sbjct: 66  QVMKSGAAALVTN-----RVLDLPIHQFVVNDTRLALGALASAWRQQFDLKVLAVVGSNG 120

Query: 119 KTTTKEML---TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT+KEML     A     +     G+ NN IGVP TL ++       + E+GM+H GEI
Sbjct: 121 KTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVPQTLLKLRPQHQMAVIEMGMNHPGEI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  LV+P + ++T     H      +  +A+     F  L   G       D F    
Sbjct: 181 DYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTHLSSNGCAVFPVSDEFDACW 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A S     K+   FG    ADF++   +    QS + ++     +E+  + IG H   N
Sbjct: 241 QALSTG---KSTLRFGSG--ADFEILPPRSDFGQSAVVLRALDAPIELRPNFIGEHNYAN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                          +     L+ F P  G   R + ALN     LI++SYNANP S+ A
Sbjct: 296 AAGAAAAAHAAGCTHEAIQAGLNAFQPVNG---RLQVALNTPSILLINDSYNANPDSVNA 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A  VL Q +    G  + VLGDM E+G  S  +H ++        + H++  G
Sbjct: 353 ASKVLGQQA----GSTLLVLGDMGEVGNQSDEYHAEVGSYAKQAGVKHLYALG 401


>gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
 gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
          Length = 470

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 171/382 (44%), Gaps = 24/382 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           D+R++   + F A+KG  +D HDF+  A   GA   +    +  A +  L      V D 
Sbjct: 33  DTRTLRAGDLFVALKGERFDAHDFLPQARAAGAVAAIAEHGLAEAGLAGLH-----VADS 87

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGV 149
             AL  L    R R    +IA+TGS GKTT  +M+   L +      +A  G++NN IGV
Sbjct: 88  RAALGTLGANWRARMSLPLIAVTGSNGKTTVTQMIASILRAWVGDAAFATEGNFNNDIGV 147

Query: 150 PLTLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           PLTL R+  D D      + ELGM+H+GEI  L  +  P +A++      H    + +E 
Sbjct: 148 PLTLLRLRQDADTWHRAAVVELGMNHVGEIAQLARMAAPTVALVNNAQREHQEFMASVEA 207

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WK 264
           +A     + E L   GT     DD+   + +A +   G +   +F     +D      W 
Sbjct: 208 VARENGAVIEVLGANGTAVFPSDDAHAAVWQALA---GTRPTLTFSLEGPSDLVAEAVW- 263

Query: 265 QCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             S   W  V      +  +     G+H  +N L            ++   + L  F P 
Sbjct: 264 --SGDHWAAVLHTPAGATAIRLRVAGWHNVKNALAATACALAAGCPLEAVARGLEAFEPV 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +           TL+D+SYNANP S++AAI VL+ +     G R  VLGDM E+G+
Sbjct: 322 KGRSQVKALQRGGRAVTLVDDSYNANPDSVRAAIDVLATLP----GPRWLVLGDMGEVGD 377

Query: 384 LSQSFHIDLAEVLSLYNISHVW 405
              +FH ++    +   I  +W
Sbjct: 378 QGPAFHAEVGRYAAACGIDALW 399


>gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Francisella
           cf. novicida Fx1]
          Length = 453

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  +     +V+    L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQDLDIPQI 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRVT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSFAVKIRVFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+     LN    TL+D++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  V+L G
Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387


>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
 gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
          Length = 452

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 181/389 (46%), Gaps = 22/389 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   DL + +    I +V    + GI+IDSR +   + F    G + DGHD+I  A +KG
Sbjct: 3   YFVKDLEKILNAKKINLVDNKEITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKG 62

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   + +  D V+        +  V+D   A+  LA          I+AITGS GKTTTK
Sbjct: 63  AVASLSLKDDFVSDNN-----IIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++T  L +  K +   G++NN +GVPLT+   P D D  + E+G  + G++ FL+ LV+
Sbjct: 118 DIVTSILETKFKVHKTQGNFNNELGVPLTILAAPEDSDILVLEMGADNFGQLDFLSKLVK 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   +IT I  +H+  F     IA AK EI  G++K G    N D+   + L   S    
Sbjct: 178 PDYTIITNIGESHIEFFGSRAGIAKAKFEITNGMKKDGFFVYNGDEPLLKELVENSSI-- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302
                S G++   D  L  +    ++   ++ +   +        G H   N++  + I 
Sbjct: 236 --NATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFSTTLK--GKHNLFNIMFAVAIA 291

Query: 303 --VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +   ++  AI  +S          R           +I+++YNA+P SMKAA+ V+
Sbjct: 292 KKIGLTNEEIRHAIDNISKI-----TNMRLESITYGEDSLIINDAYNASPTSMKAAVDVI 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           S ++      +  VLG M E+G     +H
Sbjct: 347 SDLNDF--EFKTLVLGSMFELGPNEVEYH 373


>gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris]
          Length = 494

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 186/366 (50%), Gaps = 22/366 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V+  + A    L +P 
Sbjct: 23  MIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPA----LHVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYAC 139
             V +   AL ++A A   R +AT +IA+TGS GKT+ K +L   L+   +      YA 
Sbjct: 79  VVVANTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVDGITAYAN 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP +A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257
              +  +A  K  I+  L   G   +N DD+F    + +  +  L  + +  +G   +A+
Sbjct: 198 MGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAE 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ +   +   ++ V  QG++  VV    G H   N L   G+   L A +   I A
Sbjct: 258 ITARQLRLHAAGAQFVLVIPQGEA-PVVLPLPGRHNVLNALAATGLA--LGAGIALPIIA 314

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +    +  G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VLG
Sbjct: 315 AGLAQATQVAGRQIAHTLTTGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 369

Query: 377 DMCEMG 382
           DM E+G
Sbjct: 370 DMRELG 375


>gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
 gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
          Length = 448

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 35/446 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+ HA Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKHAAQAGAVAAVVSKDYCGD--SFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +         + TI+ ITGS+GKTTTK      LSS+ K YA   SYN+ 
Sbjct: 84  IVNDPTEALKEAGENQSHLFQGTIVGITGSIGKTTTKVFANTFLSSVYKVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIE 204
           + VPL+L     + DF I E+G+S  G ++ L  +V P +AVIT +   H  NFS  GI+
Sbjct: 144 LTVPLSLLMADGNEDFIILEMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFG-KSKNADFQLRK 262
            IA  K  I   L+ +    L  D  ++   +K  S +      +SF   ++ ADF    
Sbjct: 204 GIAEEKGRI---LQNSRVQLLPKDSPWYPHFIKQASSS----EKFSFAFHNETADFY--- 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFH 321
           +K   + S +    +G     +     Y  A  N+L++L +  +L   VD  + +     
Sbjct: 254 YKAIRKDSVIISTPEGDIDFAI--SFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQ 311

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                  R+  ++  G   +I+++YNA P +M AA+  +    P   G+ I +LG M E+
Sbjct: 312 LPP---MRFEQSMRNGI-QVINDAYNACPEAMIAALDAIPH--PSESGKIILILGHMAEL 365

Query: 382 GELSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           G  S+  H  +A + LS    ++ I   WL   HVL        S  V +  +  G+   
Sbjct: 366 GNYSEEGHTIVAKKALSKASIIFFIGEKWLPIQHVLNYG-----SCEVSFHPSAQGIEEI 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++  +  GD+V++K S S     L++
Sbjct: 421 LKKVVQQGDIVLLKGSRSLALESLLS 446


>gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
 gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 210/450 (46%), Gaps = 48/450 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A++ G+   +V+    A  G     +  VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVDEVEYAPAGDPHYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             L  L +LA   R +    II ITG+ GKTTTKE++   LS         G+ NNHIGV
Sbjct: 74  SCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLSPKYTILYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLKAEHDLGIIEMGASHPGDIKELVDIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------NAD 257
           K E+++ L   K  TIF+++D+ +      ++ A G+  I S+G             N+ 
Sbjct: 194 KGELYDYLRERKDSTIFIHHDNLYL-----RNIAWGLNQI-SYGSEDGLYINGHVTGNSP 247

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAI 314
           +   +WK   +    EV+ Q          IG +   N L  + I     + +  +DTA+
Sbjct: 248 YLTFEWKAGKDGEHHEVKTQ---------LIGEYNFANALAAVTIGHFFDVESGKIDTAL 298

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K    + P+  R +  + A N    TLI ++YNANP SM+A+IS    +       ++ +
Sbjct: 299 KE---YTPQNNRSQLKQTADN----TLIIDAYNANPTSMQASISNFHNMEI---DNKMLI 348

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G+     H  + + L+      V L G    A +   P      Y +    + 
Sbjct: 349 LGDMRELGKDGPKEHQKIVDFLTECGFKDVMLVGEQFAAARHDFPT-----YPDA-PAVI 402

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +Q +   G  +++K SN      +I+ L
Sbjct: 403 EALQKNKPHGKTILIKGSNGIKLSTVIDYL 432


>gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL074PA1]
 gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA1]
 gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL007PA1]
 gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL056PA1]
 gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA1]
 gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL045PA1]
 gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA1]
 gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL038PA1]
 gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA2]
 gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA2]
 gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA1]
 gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL099PA1]
          Length = 485

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 203/481 (42%), Gaps = 65/481 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317

Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363
           D  T  +          R   R +         L+++ YNANP SM A+++ +  +    
Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTSMGHVLATR 377

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
               P   G  +AVLGDM E+G+ S   + +   +      +H   +GF V +A+ D   
Sbjct: 378 RVRDPQTRG--VAVLGDMLELGQDSARLNAESGRL-----AAH---AGFDVIIAVGD--- 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG----------DVVVVKSSNSCGFYRLINLLLEEFP 469
            + ++      +G  + +  S V+G          DVV++K+S      R+   + EE  
Sbjct: 425 EAENIAEGARAEGARVIV--STVEGASGSLGWTSHDVVLLKASRGLALERVGREVFEERE 482

Query: 470 A 470
           A
Sbjct: 483 A 483


>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 210/465 (45%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +++ A  G  +   P   V  +  DSR +     F  +KG   D H F+  A   GA
Sbjct: 4   TVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    M        I    VD    AL ++A A R R    ++ ITGS GKTTTKEM
Sbjct: 64  AAALTQEHMRMEAEEAWI---AVDSTQLALQQIAAAYRQRFSIPVVGITGSAGKTTTKEM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +ALS+  K     G++N+ IG+PL + +   + +  + E+G+S  GE+  L  +  P 
Sbjct: 121 TALALSAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLAQVAEPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV+T +   H+        I   K  I +   +   +FLN DD     L+ K+   G +
Sbjct: 181 YAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT---GYE 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T++ +G+    DF+        E +       G +S+EV    +G H   + L  L +  
Sbjct: 238 TVF-YGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVTLPVLGMHHVLDALAALAVAE 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +  A  AL  + P   R + Y   +N+    +ID+SYN++P + K+++SVL+   
Sbjct: 297 RLGVPLKRAAAALRDYRPLAMRQQIYH--VNE--VAVIDDSYNSSPGAAKSSLSVLAGFR 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GRR+AVL DM E+GE S+  H ++    +   +  +   G    A+ +   RS+  
Sbjct: 353 A---GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVGQEAKAVAEG-ARSVRA 408

Query: 425 HYS-ETMDGLFLF---IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +D  +     ++S L  GD V+VK S       ++  LL
Sbjct: 409 GIDCRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVRALL 453


>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
 gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
          Length = 468

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  D+R++     + A++G  +D H F   AV +GA  V+V+      +  L +P  
Sbjct: 24  VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141
            V D   AL  +A A +    + ++A+TGS GKT+ K ML       A  S    YA  G
Sbjct: 80  VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P + DF ++E+G   LG+I +LT +V P +A++  IAPAHL    
Sbjct: 140 NCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A  K EI+  L   GT  +N DD+F    + +    G   +  FG    AD    
Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADVTAY 258

Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              Q SE S  ++ V  QG+ + V     G H   N L    +  +    +      L +
Sbjct: 259 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAGLGL 316

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR   +      G   LID+SYNANP S+  AI  L+  S    G    VLGDM 
Sbjct: 317 ARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTAAS----GPGWLVLGDML 369

Query: 380 EMG 382
           E+G
Sbjct: 370 ELG 372


>gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 465

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  D+R++     + A++G  +D H F   AV +GA  V+V+      +  L +P  
Sbjct: 21  VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141
            V D   AL  +A A +    + ++A+TGS GKT+ K ML       A  S    YA  G
Sbjct: 77  VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P + DF ++E+G   LG+I +LT +V P +A++  IAPAHL    
Sbjct: 137 NCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A  K EI+  L   GT  +N DD+F    + +    G   +  FG    AD    
Sbjct: 197 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADVTAY 255

Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              Q SE S  ++ V  QG+ + V     G H   N L    +  +    +      L +
Sbjct: 256 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAGLGL 313

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR   +      G   LID+SYNANP S+  AI  L+  S    G    VLGDM 
Sbjct: 314 ARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTAAS----GPGWLVLGDML 366

Query: 380 EMG 382
           E+G
Sbjct: 367 ELG 369


>gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 452

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  ++V+         L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVTIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S     ++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  ++L G
Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387


>gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 210/444 (47%), Gaps = 36/444 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I +  VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260
           K E+++ L  ++  T+F+++D+++   L   +H L +        +Y  G  + N+ +  
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHGLNLIPYGSEDALYVNGHVTGNSPYLT 250

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +WK   +    +VQ Q          IG +   N L  + I      +     +AL+ +
Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P+  R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E
Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVK---KKMLILGDMRE 354

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  S + H  + + L   +   V L G    A     P   + +  E +  L    Q+ 
Sbjct: 355 LGAESAAEHRKIVDFLQECSFEKVLLVGEQFTATHP--PYHTYANAQEVIKEL----QTE 408

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
                 +++K SN      ++  L
Sbjct: 409 KPKDYTILIKGSNGIKLSTVVEFL 432


>gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
 gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
          Length = 453

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 189/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  +     +V+    L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQDLDIPQI 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA++T +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMVTNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAVKIRIFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  V+L G
Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387


>gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
 gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
          Length = 391

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 182/393 (46%), Gaps = 22/393 (5%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V+DVL A   LA     ++   + A+TGS GKTTTK+ML   L++  KTY   G+Y
Sbjct: 10  PYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTFKTYKTQGNY 69

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P  A++T +  AHL+ F   
Sbjct: 70  NNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDR 129

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            EIA  K +I +G+EK G +    D    + L         K +  FG    A+ ++ + 
Sbjct: 130 SEIAKGKLQIADGMEKGGVLLAPVDPIVEDYLPTD------KKVVRFGPG--AELEITEL 181

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +  +    +V    +++++   G  Y+    M+ +   V++     +  I+    F   
Sbjct: 182 TERKDSLTFKVNFLEQALDLPVTG-KYNATNAMIASY--VALQEGVTEEQIR--QAFQNL 236

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R           ++ + YNANP +MK  +   S I  +  G++IAVL DM E+G+
Sbjct: 237 ELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGD 296

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLF 434
            S   H  +   ++   +  V   G  +  L     +     HV+Y       +  + + 
Sbjct: 297 QSVQLHNQMILSITPDVLDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMV 356

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             ++ SL   D +++K SNS    +L+  L  E
Sbjct: 357 KQVKESLGAHDQILLKGSNSMNLAKLVESLENE 389


>gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 452

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  ++V+         L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVTIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S     ++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  ++L G
Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387


>gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase
           [Paludibacter propionicigenes WB4]
 gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paludibacter propionicigenes WB4]
          Length = 434

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 216/443 (48%), Gaps = 29/443 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR       FFA+KG ++D + F L A++ G    VV+    A    +      V+
Sbjct: 13  ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYA----IDERFILVE 68

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL +L +LA   R +    +I ITG+ GKTTTKE++   L          G+ NNHIGV
Sbjct: 69  NVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQGNLNNHIGV 128

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL ++  + +  + E+G +H  EI+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 129 PLTLLQLKPEHEIAVIEMGANHPEEIKALAEIAEPDYGIITNVGMAHLEGFGSFEGVKKT 188

Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRK-WKQC 266
           K E++E + K G  IF+N ++     +   S   +  + + S+   KN+  +++     C
Sbjct: 189 KRELYEYIYKAGKAIFINKNNEHLLKMAVDSGFVVNNENVISYSLDKNSSSRIKAVVTDC 248

Query: 267 SEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           S   ++E++    +  S ++    IG + A+N+L  + I      + +     L  ++P+
Sbjct: 249 S--PFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEYFGLNKEELTAGLEKYNPQ 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +      N+    LI ++YNANP SMKAAI   +Q++  G   +  +LGDM E+GE
Sbjct: 307 NNRSQLTITENNK----LIIDTYNANPTSMKAAILNFAQMNVEG---KTLILGDMLELGE 359

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL 441
            S + H  + ++L    ++ V L G +         RS +  Y+  + +  L  +I++  
Sbjct: 360 QSSAEHQGIIDLLKQNKLADVLLVGNNF--------RSTNNPYTCFDEVTELINYIKNKP 411

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
           +    V++K S      +++ LL
Sbjct: 412 ICNKYVLIKGSRGIKLEKVVPLL 434


>gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct]
          Length = 487

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  +     +V+    L IP  
Sbjct: 49  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQGLDIPQV 102

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 103 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 161

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 162 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 222 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 278

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S     ++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 279 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 336

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 337 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 391

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  ++L G
Sbjct: 392 NYHRKMGQWLKKANLDKIFLFG 413


>gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
 gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
          Length = 251

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 5/203 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S D+R +  +  +FA+KG ++DG+ F+  AV+ GA   VV+ D  A I    I V  
Sbjct: 14  NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVD-DEDAMINENCILV-- 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +DVL  L +LA   R      II++TGS GKTTTKE++   L++     A +G+ NNHI
Sbjct: 71  -EDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     D+DFGI E+G +H  EI FL ++ +P   +IT    AHL  F  IE I 
Sbjct: 130 GVPLTLLSFSEDLDFGIVEMGANHQKEIEFLCNIAQPDYGLITNFGKAHLEGFGSIEGII 189

Query: 208 SAKAEIFEGLEKTGT-IFLNYDD 229
             K+E+++ L      +F+N +D
Sbjct: 190 KGKSELYDFLRNNNKLVFINTND 212


>gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 452

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  ++V+         L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTKGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S     ++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  ++L G
Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387


>gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA2]
 gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA3]
 gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA4]
 gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA2]
 gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL103PA1]
          Length = 485

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 206/480 (42%), Gaps = 63/480 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDI 317

Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363
           D        +ALS    +     R +         L+++ YNANP SM A+++ +  +  
Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
              +   + R +AVLGDM E+G+ S   + +     S    +H   +GF V +A+ D   
Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE-----SGRRAAH---AGFDVIIAVGD--- 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG---------DVVVVKSSNSCGFYRLINLLLEEFPA 470
            + ++      +G  + + S++ D          DVV++K+S      R+   + EE  A
Sbjct: 425 EAKNIAEGARAEGARVIV-STVEDASGSLGWTSHDVVLLKASRGLALERVGRDVFEEREA 483


>gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 452

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+  GA  ++V+         L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S     ++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  ++L G
Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387


>gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 431

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 186/385 (48%), Gaps = 25/385 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEGDQRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIGV
Sbjct: 74  DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264
           K E+++ L K   I F+++D+ +   +    + +   T   +Y  G+ + N+ +   +WK
Sbjct: 194 KGELYDFLRKKDAITFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +         G+  +V    IG +   N L  + I      +     +AL+ + P+ 
Sbjct: 254 AGKD---------GERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALAEYTPQN 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G 
Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFQNMTVPH----KMLILGDMRELGA 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            S + H  + + +   +   VWL G
Sbjct: 357 DSPAEHQKIVDYIKESDFEKVWLVG 381


>gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
 gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
          Length = 475

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 206/455 (45%), Gaps = 42/455 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR++ P   F A++G   DGHDF   AV  GA  V+        +   ++P   VD
Sbjct: 30  VVIDSRAVVPGALFVALRGERADGHDFAAAAVAAGAAGVLAQR----PLDDPALPAVIVD 85

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D + AL +LA  V ARL  + T++ +TGS GKT+TK+++   L     T A  GS+NN I
Sbjct: 86  DAVAALGRLAGGVLARL-PQVTVVGVTGSAGKTSTKDLIAQVLRRHGPTVAAEGSFNNEI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLT+ R        + E+G   +G + +L  +  P I V+  +  AHL  F   E IA
Sbjct: 145 GHPLTVLRADEQTRHLVLEMGARGIGHVAYLCRVAPPRIGVVLNVGSAHLGEFGDREAIA 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---------KSKNADF 258
            AK E+ E L   G   LN DD     + A++ A     + +FG           +  D 
Sbjct: 205 RAKGELVEALPADGAAVLNADDPLVRAMAARTAA----EVLTFGRAADADVRAADETLDA 260

Query: 259 QLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           + R ++   + +    V+L+      +H   G H   N L    +       V+   +AL
Sbjct: 261 RGRPRFTLVTPRGSAPVELR------LH---GRHAVGNALAAAAVALRAGMAVEAIARAL 311

Query: 318 SVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           S   P      R+R  + +     T+++++YNANP SM+AA+  ++ ++    GR  A L
Sbjct: 312 SQAAPL----SRWRMEVTERPDGVTVVNDAYNANPESMRAALEAVAHMARAAGGRAFAAL 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---- 431
           G+M E+G  S + H  + + ++    + +   G     L D   R       E +     
Sbjct: 368 GEMAELGARSVAEHEKIGQHVARNGYAGLVAVGEAAAPLLDGA-RQAGSWTGECVQVDDV 426

Query: 432 -GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +   L   DVV+VK S   G  R+   LL
Sbjct: 427 GAAVTALSERLRPRDVVLVKGSRVAGMERVAQGLL 461


>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
 gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
          Length = 468

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  D+R++     + A++G  +D H F   AV +GA  V+V+      +  L +P  
Sbjct: 24  VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141
            V D   AL  +A A +    + ++A+TGS GKT+ K ML       A  S    YA  G
Sbjct: 80  VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P + DF ++E+G   LG+I +LT +V P +A++  IAPAHL    
Sbjct: 140 NRNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A  K EI+  L   GT  +N DD+F    + +    G   +  FG    AD    
Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADVTAY 258

Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              Q SE S  ++ V  QG+ + V     G H   N L    +  +    +      L +
Sbjct: 259 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAGLGL 316

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR   +      G   LID+SYNANP S+  AI  L+  S    G    VLGDM 
Sbjct: 317 ARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTTAS----GPGWLVLGDMR 369

Query: 380 EMG 382
           E+G
Sbjct: 370 ELG 372


>gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL001PA1]
          Length = 485

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 170/391 (43%), Gaps = 41/391 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDI 317

Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363
           D        +ALS    +     R +         L+++ YNANP SM A+++ +  +  
Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +   + R +AVLGDM E+G+ S   + +
Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE 406


>gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 207/431 (48%), Gaps = 31/431 (7%)

Query: 18  SIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTD 73
           S+G++ +G   F+  +  DSR       F AIKG   DGH +I + + +  AG +V    
Sbjct: 9   SLGLIHEGKPFFIKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNLLDENIAGFLVREDF 68

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SS 132
               I +         D + AL  +A   R   KA ++AI GS GKTTTKE++   L   
Sbjct: 69  DCKEILAKGKSCLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGKTTTKELIAHVLPGK 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           + KTY    ++N+ IG+P  +     D+ + + E+G + L +++ LT++ + HI VI++I
Sbjct: 129 VHKTYK---NFNSQIGLPKVVITADDDIGYLVLEMGATALEDVKKLTNIAKQHIGVISSI 185

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL +F  IE +     E+F+       ++     SF++    K + L      SF +
Sbjct: 186 GEEHLESFGSIENVVKGNFEVFDSPNLLSGVYPKAFHSFYK----KEYGL------SFCR 235

Query: 253 SK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            + +AD +++      E +  E+     ++ V+  GI    A++    +G+++    D  
Sbjct: 236 FRDDADIRVKNVYIDEEGTHFEIMGIRLTIPVLSIGI----AESAAAAVGVLASFGIDWK 291

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                   F   +GR +     + +G F +ID++YNANP S+K AI     I    +  +
Sbjct: 292 ELKDRFESFKGVQGRMQ----LIKKGPFRIIDDTYNANPVSVKNAILT---IDSFKDFNK 344

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETM 430
           I VLGDM EMGE S++ H  +  +L   +I++V+L G  +    D L  S   V Y +  
Sbjct: 345 IIVLGDMLEMGEYSKALHEKVGAMLKSSHINNVYLYGSDMKYAYDVLKLSNKEVFYFDNQ 404

Query: 431 DGLFLFIQSSL 441
           + L   +  SL
Sbjct: 405 EELSFHLVKSL 415


>gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 951

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 185/383 (48%), Gaps = 35/383 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +VPQ  + G+S D+R I   E F A+ G ++D H+++  A  +G         +  ++  
Sbjct: 508 LVPQ--IKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARG----ACAAVVAHAVPD 561

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---Y 137
             +P   + D   AL ++  A R +    ++A+TGS GKTTTKEM++  L+  +      
Sbjct: 562 AKLPQLVLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAMLAEWQGEAGRL 621

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+ NN IGVPLTL R+  +    +FELGM+H GEI  L  +  P +A++T     H 
Sbjct: 622 ATAGNLNNDIGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPTVALVTNAQREHQ 681

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E +A         L + G      D+ +  +  A +     + +  FG     D
Sbjct: 682 EFMHSVEAVAHENGAAIAALPEDGVAVYPGDEPYSAIWDALAEP---RRVLRFGLQPGLD 738

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--------GYHMAQNMLMTLGIVSILTAD 309
                    +EQ   +V    +   V   G+        G H  +N L  +       A 
Sbjct: 739 VY-------AEQILADVHAT-RCRVVTPMGVADLTLPVPGLHNLRNALAAIASAIAAGAP 790

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++ A++ALS F P  GR +     ++ G   LID++YNANP S++ A+ VL++++    G
Sbjct: 791 LEGAVRALSGFSPVAGRMQHKH--MSDGTL-LIDDTYNANPDSVRVAVDVLARMA----G 843

Query: 370 RRIAVLGDMCEMGELSQSFHIDL 392
           +R+ VLGDM E+G+   + H+++
Sbjct: 844 KRVLVLGDMGEVGDNGPAMHVEV 866



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 158/386 (40%), Gaps = 54/386 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-----IP 84
           + +DSR I P + F A  G   DG  +I  A+  GA  V+       ++ +++     +P
Sbjct: 31  LKLDSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDAVAAVADQAPMLP 90

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V G+  +LG L       R  ++  ++A+TG+ GKT++ + +  ALS   K    IG+  
Sbjct: 91  VTGLRALLGELADTWY-GRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGTLG 149

Query: 145 ----------------NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHI 186
                           + + V  TLA M    D G   + M  S +G  +     VR  +
Sbjct: 150 AVLPDGRTLGGDLTTPDVLTVHRTLAAM---RDAGAKAVAMEASSIGIEQGRMDGVRVAL 206

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   HL     +E   +AKA +F     T  + +N DD     L A     G+  
Sbjct: 207 AAFTNLTRDHLDYHGTMERYEAAKARLFRWPGLTAAV-INADDEAGRRLIA-----GLPA 260

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNML 297
             + G S +AD ++    +  +   ++   QG+           ++V   +G H   N+L
Sbjct: 261 GMAMGYSLSADPEIPAGMRARD---LQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLL 317

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-------GKRYRCALNQGFFTLIDESYNANP 350
           +  G++  L        + L+   P +GR           + A  +G   ++D  Y   P
Sbjct: 318 LVAGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVD--YAHTP 375

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            ++  A+S L  ++    GR I + G
Sbjct: 376 DALARALSALRAVATARSGRLICLFG 401


>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
 gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
          Length = 454

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 205/471 (43%), Gaps = 34/471 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  +L  A  G  +G  P+      V  I  DSR       F  IKG   D HDFI   +
Sbjct: 5   TLKNLALACNGTYVG--PKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQVM 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +K     +   D+    G    P   V   L A+  +A     + +  ++ ITGSVGKT+
Sbjct: 63  EKAVLATLSEKDL----GEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVGKTS 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   L+    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L  +
Sbjct: 119 TKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP+  VIT I   HL      + I  AK EIF+ L+    I LN DD   + L      
Sbjct: 179 ARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDD---DKLVTVQET 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----VQLQGKSMEVVHHGIGYHMAQNM 296
            GIK ++ FG   +       W    +   ++     +    +S  V+    G H   N 
Sbjct: 236 KGIKPVF-FGVENHQGI----WADEIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +       ++   K +       GR       +    +T+ID+ YNANP SMKA+
Sbjct: 291 LAATAVGLTYGLTIEEIRKGIESLQSVSGRFH----IIEAPNYTVIDDCYNANPISMKAS 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL+       GR++A+LGDM E+G   +  H ++ +  +   I  +   G     + D
Sbjct: 347 LDVLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMAD 402

Query: 417 A---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +     V +    + L   +   L  GD V+VK+S+   F  ++  L
Sbjct: 403 AAGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453


>gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
 gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
          Length = 1024

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 174/364 (47%), Gaps = 8/364 (2%)

Query: 102  ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            AR      ++ +TGS GKTTT  ML  A +      A  G+ N   GV   LA M    D
Sbjct: 665  ARRLFTGKLVGVTGSAGKTTTVAMLKHAFNDSGHISATRGNANLPYGVAWNLASMESGTD 724

Query: 162  FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            + I E+ +  + E   L    RPH+AV+T I  AHL     IE IA  KA IF GL   G
Sbjct: 725  YMILEIAIGRMKESAVLA---RPHVAVVTNIGSAHLEFHKTIETIAKRKARIFWGLVDGG 781

Query: 222  TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +N D   F+L+  +++ +    I ++G+   +  +L       ++  +E+Q++G+  
Sbjct: 782  IAVINRDTECFDLILHEANKVKAVVI-TYGEHSESAVRLININDKDKE--VEIQVEGRIY 838

Query: 282  EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  +  H   NML T  +   L   +D  +K L  F P  GRG+ +   ++     +
Sbjct: 839  IFGSKVLSKHHISNMLCTAAVAIALDLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILV 898

Query: 342  IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYN 400
            IDESYNANP SM+AAI      + +   + I VLGDM ++G+ ++  H+  L E+LS   
Sbjct: 899  IDESYNANPLSMQAAIQGARTTARNRSSKLILVLGDMLQLGDQTEKLHLSLLPEILSP-E 957

Query: 401  ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            I  V L G  +  LK  +     V   ++++     +   +   DVV+ K SNS     L
Sbjct: 958  IRLVVLVGEQMALLKGHITDHAEVIAVDSVEDALEPLIFGIRANDVVMAKGSNSINLNYL 1017

Query: 461  INLL 464
            ++ L
Sbjct: 1018 VDQL 1021


>gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
 gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
          Length = 432

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +++    A  G     +  V+
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEAQYAIEGDRRYIL--VN 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQTHNILYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHQGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           K E+++ L K G  TIF+++D+ +     + L   S+  G     +   + N+ +   +W
Sbjct: 194 KGELYDFLRKKGNSTIFIHHDNPYLMNIAKGLNLISYGSGEDLYVNGCITGNSPYLALEW 253

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K          +  G+   +    IG +   N L  + I      +     +AL+ + P+
Sbjct: 254 K---------AEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGVEDRKIDEALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    A N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G 
Sbjct: 305 NNRSQLKETADN----TLIIDAYNANPTSMAAALQNFRNMTV---SHKMLILGDMRELGT 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            S + H  + + +   +   VWL G
Sbjct: 358 ESLNEHQKIVDYIKESDFEKVWLVG 382


>gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 476

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 192/409 (46%), Gaps = 28/409 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVD 89
           DSR     + F AI G   DGH FI    + G    +  T   D+ A    L +P     
Sbjct: 35  DSRQYERDDLFVAITGARVDGHRFIPAIARAGGAGALCTTLSEDVPAGFLQLVVP----- 89

Query: 90  DVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DV+ AL   A     R   T+ I ITGS GKTTTKE +   L  +  T     SYNN +G
Sbjct: 90  DVVKALQATARVRVQRQPETLKIGITGSSGKTTTKEAIAAVLGRVAPTLKTYASYNNELG 149

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIA 207
            PLTL R+  +  + + E+G   +GE+R L   +  P  +VITT+  AHL +F  +  +A
Sbjct: 150 YPLTLLRLEAEHRYAVLEMGAEWVGELRGLCETIACPDWSVITTVGAAHLKHFGSLANVA 209

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQC 266
            AK+E+ + L   G  FLNYDD     +K K+ A   + IY +G+   A  + L   ++ 
Sbjct: 210 IAKSELVQVLSPEGIAFLNYDDPVVRAMKEKTRA---RVIY-YGQGDGAAVRALHVEERG 265

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S   ++++ + + V     G H     L    + S     +++  ++L    P +GR
Sbjct: 266 LLGSRFTLRIEDEDVPVQLRLPGTHGITTALAAAAVGSAANIPLESIRESLEALSPVQGR 325

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G     A   G  TLID++YNA   S+ A    +   +   +G+R  VLG++ E GE ++
Sbjct: 326 GVVKGGAGPNG-STLIDDTYNAIRHSIIAMAQAMQATTIAPQGKRWVVLGELFEQGEHTR 384

Query: 387 SFHI--------DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             H+         +  ++ L + +  ++ G    AL+  +PR    H+S
Sbjct: 385 DEHLASGLGLAGKVDYLVVLGDNARYYMEG----ALQAGMPRKAIYHFS 429


>gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 494

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 22/366 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++V+  + A    L +P 
Sbjct: 23  MIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPA----LHVPQ 78

Query: 86  FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYAC 139
             V +   AL ++A A   R +AT +IA+TGS GKT+ K +L   L+   +      YA 
Sbjct: 79  VVVANTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVDGITAYAN 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP +A++  IAPAHL  
Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLER 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257
              +  +A  K  I+  L   G   +N DD+F    + +  +  L  + +  +G   +A+
Sbjct: 198 MGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAE 257

Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              R+ +   +   ++    QG++  VV    G H   N L   G+   L A +   I A
Sbjct: 258 ITARQLRLHAAGAQFVLATPQGEA-PVVLPLPGRHNVLNALAATGLA--LGAGIALPIIA 314

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +    +  G++    L  G   LID+SYNANP S+ AAI  L+     GEG    VLG
Sbjct: 315 AGLAQATQVAGRQIAHTLATGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 369

Query: 377 DMCEMG 382
           DM E+G
Sbjct: 370 DMRELG 375


>gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 232/487 (47%), Gaps = 51/487 (10%)

Query: 4   LWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           LW   DL ++I     G   I+P  F    + DSR + P  AF AI+G   DGHD+I  A
Sbjct: 5   LWKVSDLAESIGASWWGEDIILPDFF----TADSREVRPGAAFVAIRGNAEDGHDYIKDA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVA---ARLRSKATIIAIT 114
           + +GA L++     +     LSI    V  V+D +  L ++A A   A L  +  +IAIT
Sbjct: 61  LHQGASLIIAEKGRIPQ--GLSIRDRAVIEVNDSVVDLARMASAYLSACLPDE--VIAIT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTT+E+L      +   +    S+N  IG  LT+  MP   +  I E+G +  GE
Sbjct: 117 GSVGKTTTREVLKKCFEGMPLVFGAEKSFNTLIGCSLTILAMPAGTNVLILEMGTNKPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  +     P   +IT ++ AHL     +E + +AK EI        T+  N D+     
Sbjct: 177 IEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITRS-PHLKTLIFNADNENL-- 233

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----------VQLQGKSMEV 283
               ++A G      +G  K     +RK +    QS  +           ++ +   +  
Sbjct: 234 ----ANAAG----QVYGTCKKIGVGVRKGEVRICQSTFDLVENLPRLKTTIRWEDGVISD 285

Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           ++ G+ G H + +++  L +   L   ++ A++ L       GRG+ +     +    +I
Sbjct: 286 LYCGLWGTHNSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGRVFS---TRAGAVII 342

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+SYNANP+SMKA+++  S +    +GR++A+LG M E+G+     H ++  + S + + 
Sbjct: 343 DDSYNANPSSMKASLNTFSTVEV--KGRKLAILGSMKELGKEESVLHEEI--LRSTHFLD 398

Query: 403 HVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            ++L G       + +P   RS  V  S+ +    + +   +  GD V++K S+S    +
Sbjct: 399 ALFLVGEEWKVPLEKMPEHERSKIVIVSK-VQSFAVELAKMIRSGDGVLIKGSHSHHLEK 457

Query: 460 LINLLLE 466
           ++ +L+E
Sbjct: 458 VVLILME 464


>gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 465

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 196/422 (46%), Gaps = 23/422 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  +  DSR   P   F  + G   DGHDF   AV++GA  V+ +  +      ++ PV
Sbjct: 1   MVTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRPLP----DVAAPV 56

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D + AL  LA   R +++A ++ +TG+ GKT+ KE L   L+   KT     ++NN
Sbjct: 57  LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALNHNN 116

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+P T+     D DF + E G+SH G++  L  ++RP + +I  + P H     G   
Sbjct: 117 QIGMPCTVLNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLILNVGPGHTEGL-GDRG 175

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSK---NADF--- 258
           +A  KA +   L + G   ++ D  + +L++ ++ A G K   +S G  +    AD+   
Sbjct: 176 VAWHKARLLAHLAQGGLGLVSAD--YPDLVR-EAGATGAKLRFFSAGAHEVEYRADYVGP 232

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 + + +    + L G   + V    G + A+N +       +L        + L 
Sbjct: 233 ATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLLGLSPAEIAEGLG 292

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGD 377
                  R  R R     G + +ID++YNANP SM+    +L   +    GR  + VLG+
Sbjct: 293 RAQLPPQRFNRERV----GAWEIIDDTYNANPLSMR---RMLETAAGQARGRAFVPVLGE 345

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G ++++ H +L  +L+    S V+  G H   ++  L R  +      +DG   F+
Sbjct: 346 MGELGAVAEALHEELGRLLADLGPSAVFWKGGHADEVRAGLARGGYDGPWLPVDGPESFM 405

Query: 438 QS 439
            +
Sbjct: 406 AA 407


>gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
 gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
          Length = 470

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 176/397 (44%), Gaps = 43/397 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-----IP 84
           IS DSRS  P + F AIKG  +D HDF+           V   ++ A++ S +     +P
Sbjct: 29  ISTDSRSAGPGDLFVAIKGDRFDAHDFLPD---------VAARNVTAALASRTPQDWNVP 79

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIG 141
              V D    L  LA   R +    ++A+TGS GKTT KEM+     A        A  G
Sbjct: 80  TLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN IG+PLTL R+       + ELGM+H GE   L  +  P +AV+      H    +
Sbjct: 140 NFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSDLAKIAEPTVAVVNNAQREHQEFMA 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E +A   A +   L   G      DD++  + +    A G + +         DF L 
Sbjct: 200 TVEAVALEHASVIHALSPQGIAVFPADDAYASIWRVA--ATGNRIM---------DFALN 248

Query: 262 KWKQCSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             ++ +E +         + +      +EV    +G H A N L            +D  
Sbjct: 249 SAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNALAATSAALAAGVSLDAI 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS-QISPHGEGRR 371
            + L  F   +GR +  +  L      T+ID++YNANP SM+AAI VL+ + +P     R
Sbjct: 309 RRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLAPRPAP-----R 363

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + V+GDM E+G+   +FH ++        I  ++  G
Sbjct: 364 VLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMG 400


>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
 gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
          Length = 449

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 200/441 (45%), Gaps = 19/441 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  +  D+R       + AIKG  +DGH ++  A++ GA  V+   D      S   P+
Sbjct: 24  LVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETALKNGALAVLSQQD------SQVRPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD   A   +A   R      ++AITGS GKTT KE L+  L+   K      + NN
Sbjct: 78  VLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKTTIKEWLSQCLAERVKVLKTEKNNNN 137

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL  +  +    + E G S +GEI  L  +  P IA+I+  + +H   F  IE 
Sbjct: 138 QIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQITTPDIAIISNASGSHYEGFGSIEG 197

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA  K  +  GL   G   LN+DD +F+        L  +   SFG    AD   ++ + 
Sbjct: 198 IAKEKGALLTGLTAEGVAILNHDDPWFDYWVG---LLDKRACVSFGFGSGADLVAKQVEL 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            S+ S   +  QG+   V+H  + G H   N +  L  +  L    ++A ++LS   P  
Sbjct: 255 FSQSSKSILCYQGEEY-VLHLAVPGKHQVANAMAVLLALLNLGVTFESACESLS--RPLV 311

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              +     LN     L D  YNA+P S++AAI VL   S   +G++  VLG + E+GEL
Sbjct: 312 IDKRLEFQYLNSQALVLND-CYNASPKSVEAAIDVLMSQS---QGQKWLVLGALGELGEL 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +  H  L E  +   ++ +   G    +A K    R     Y E       FI+  L  
Sbjct: 368 EEKIHQQLGEYAAFAGVTGLISVGPIAAIAAKAYEERGGVAVYCENNLQAAEFIK-PLGK 426

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            + ++VK S S    ++I +L
Sbjct: 427 ENAILVKGSRSAQMEQIIKVL 447


>gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 370

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 11/327 (3%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     +
Sbjct: 2   LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASN 61

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  
Sbjct: 62  FNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGS 121

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261
           +  +A AK EI+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF   
Sbjct: 122 LAGVAKAKGEIYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAA 178

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S  +   +Q    S++V+    G H   N L    +   + A +      L+   
Sbjct: 179 NIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALK 238

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+
Sbjct: 239 AVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAEL 291

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           G  S++ H+ + E      I  V  +G
Sbjct: 292 GAESEACHLQVGEAAKAAGIDRVLSTG 318


>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 204/477 (42%), Gaps = 56/477 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G++IDSR       F  IKG   DGH FI   +++GA   +    +     S S P  
Sbjct: 28  VSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQGALCTLSEHPL-----SDSFPYI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  +A   R      ++ I+GSVGKT+TKEM+   L          G++NN 
Sbjct: 83  LVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTAGNFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++  + +  + E+G+S   E+  L  + +P I V+T I   HL N    + +
Sbjct: 143 IGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVAQPDICVLTNIGQCHLENLGDRDGV 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL------------------------ 242
             AK E+F       +I LN DD     + A  HA                         
Sbjct: 203 RKAKTEMFAHRRPGASIILNGDDDKLSEI-ATVHAASFSKQDGTTVVPYSDSTHDETSAA 261

Query: 243 ------GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                 G  T   FGK  +  F   + +    + +  ++        V+    G HM  N
Sbjct: 262 SAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSCKIHAPAGDFTVIISIPGAHMVYN 321

Query: 296 ML--MTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L    +GI   LT D + T I+AL    P  GR       +     T++D+ YNANP S
Sbjct: 322 ALAGTAVGIELGLTLDEIKTGIEAL---QPVAGRNHM----IETEHLTILDDCYNANPVS 374

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           MKA++ VLS        R++A+LGDM E+G      H ++    +   +  +   G    
Sbjct: 375 MKASLDVLSTALT----RKVAILGDMFELGTKELLLHREVGTYAAEKKLDLLCCIGTLSK 430

Query: 413 ALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A+ D     +      + Y ET +     + S + + D ++VK+S+   F  +++ L
Sbjct: 431 AMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTILVKASHGMAFEEIVHAL 487


>gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 435

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N + I+S  +   + F AI+G    G+ +I  A +KGA   V+  D      +     F
Sbjct: 25  INNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGA--YVIYDDKTKK--TPYPKAF 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D +  L K A   R      II ITGS GKTT K+++   LS+  K     G+ NNH
Sbjct: 77  LVNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQLLSTKYKGKKTEGNLNNH 136

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P++L R     DF + E+GMS  GEI  L  + +P   +IT I  +HL      E +
Sbjct: 137 IGLPVSLLRAENSDDFLVLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSRENV 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK+EI + ++    +FLN DD F   L       GIK + + GKS  AD++ +     
Sbjct: 197 FKAKSEIIKHVK--AKMFLNGDDPFLGDLP------GIK-VSADGKS-TADYRAKNINLS 246

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323
            + +  ++  +G ++E   + IG H   N+L  + I     I T D+    K + +    
Sbjct: 247 GDGTKFDLN-EGLTLET--NLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKL---- 299

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R++  +  G    I+++YNA+P SM+ AI   S I  + +  ++ +LGDM E+GE
Sbjct: 300 --TAMRFQ-KIENGNIIYINDAYNASPISMEKAILTFSDI--YNDRYKVVILGDMLELGE 354

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
               FH +L ++L     + + L G  +  L + +      H+ E
Sbjct: 355 KDAEFHEELEKILRNTKQNEILLYGSLMKNLYEKIKDMNVFHFDE 399


>gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 482

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 25/478 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +++QA + +         ++G +IDSR++  Q  F A +G   DG+ +   A+  G
Sbjct: 4   CTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAG 63

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117
           A  VV+  +    +  L+      +     DD    L +LA   R ++   T++ +TGS 
Sbjct: 64  ASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSC 123

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+ML   LS+  +TY    ++NN IG+PLT+   P D +  + E+GM+H GEI  
Sbjct: 124 GKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISR 183

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-----YDDSFF 232
           +  + +P IAVIT I  +HL      + IA AKAEI   +    +  L      +D   F
Sbjct: 184 MALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDF 243

Query: 233 ELLKAKSHALGIKTIYS-FGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +++A     + S  G+  ++   + K    +  +     V   G   +V     G
Sbjct: 244 TTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAG 303

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                +    L +  IL    D A  AL   H K+    R           +ID+SYNA 
Sbjct: 304 KACVIDACFALRVCEILGVSYDKACCAL--LHMKQVH-MRMEEIKKPHLPLIIDDSYNAA 360

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PAS+  A+ VL Q +    GRRIA+LG++ E+G  +   H  +   ++  N+  V   G 
Sbjct: 361 PASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGS 418

Query: 410 -HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            H   + +A       S  + Y   +D     ++  L   DV++VK+S S    + + 
Sbjct: 419 DHAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 476


>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 205/477 (42%), Gaps = 56/477 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G++IDSR       F  IKG   DGH FI   +++GA   +    +     S S P  
Sbjct: 28  VSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQGALCTLSEHPL-----SDSSPYI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V     AL  +A   R      ++ I+GSVGKT+TKEM+   L          G++NN 
Sbjct: 83  LVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTAGNFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+ ++  + +  + E+G+S   E+  L  + +P I V+T I   HL N    + +
Sbjct: 143 IGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIAQPDICVLTNIGQCHLENLGDRDGV 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL------------------------ 242
             AK E+F       +I LN DD     + A  HA                         
Sbjct: 203 RKAKTEMFAHRRSGASIILNGDDDKLSEI-ATVHAASFSKQDGTTVVPYSDSTHDETSAA 261

Query: 243 ------GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                 G  T   FGK  +  F   + +    + +  ++        V+    G HM  N
Sbjct: 262 SAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSCKIHTPAGDFTVIISIPGAHMVYN 321

Query: 296 ML--MTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L  + +GI   LT D + T I+AL    P  GR       +     T++D+ YNANP S
Sbjct: 322 ALAGIAVGIELGLTLDEIKTGIEAL---QPVAGRNHM----IETEHLTILDDCYNANPVS 374

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           MKA++ VLS        R++A+LGDM E+G      H ++    +   +  +   G    
Sbjct: 375 MKASLDVLST----ALTRKVAILGDMFELGTKELLLHREVGTYAAEKKLDLLCCIGTLSK 430

Query: 413 ALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A+ D     +      + Y ET +     + S + + D ++VK+S+   F  +++ L
Sbjct: 431 AMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTILVKASHGMAFEEIVHAL 487


>gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
 gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
          Length = 494

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 229/482 (47%), Gaps = 50/482 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---- 78
           P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA   +V   +  ++    
Sbjct: 23  PRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLA 82

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             L   V  V D   A+  +A   R      +IA+TGS GKTTTK ++   L+S   T A
Sbjct: 83  AELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP TL     D    + E+GM   G++  L   VRP   ++  +  +H+ 
Sbjct: 143 TAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVVNVGESHIE 202

Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKN 255
                E IA AKAE+   L E TG  F+N DD + + ++  A+  A  ++T+   G +  
Sbjct: 203 LLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETVLFDGSAAA 262

Query: 256 ADFQLRK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGY------HMAQNMLMT 299
           A+ + +           W   +EQ  +E+  QG+    + H +G+        A+  L  
Sbjct: 263 AERRAQADAAEAARPAVW---AEQ--VELDEQGRPRFRL-HAVGFADAPEEETARCALTL 316

Query: 300 LGIVSILTADVDTAI------------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+ ++  A   TA+             AL+   P+ GR +  R    +G FT+++++YN
Sbjct: 317 RGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRA---RGGFTVVNDAYN 373

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  +   +  +   
Sbjct: 374 ANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCV 431

Query: 408 GFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           G   L + DA  R+      +  + ++  +F  + + +  GD V+VK+S+  G  R++  
Sbjct: 432 GELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHFMGLTRVVEG 491

Query: 464 LL 465
           L+
Sbjct: 492 LV 493


>gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
 gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 491

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 25/478 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +++QA + +         ++G +IDSR++  Q  F A +G   DG+ +   A+  G
Sbjct: 13  CTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAG 72

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117
           A  VV+  +    +  L+      +     DD    L +LA   R ++   T++ +TGS 
Sbjct: 73  ASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSC 132

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+ML   LS+  +TY    ++NN IG+PLT+   P D +  + E+GM+H GEI  
Sbjct: 133 GKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISR 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-----YDDSFF 232
           +  + +P IAVIT I  +HL      + IA AKAEI   +    +  L      +D   F
Sbjct: 193 MALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDF 252

Query: 233 ELLKAKSHALGIKTIYS-FGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +++A     + S  G+  ++   + K    +  +     V   G   +V     G
Sbjct: 253 TTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAG 312

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                +    L +  IL    D A  AL   H K+    R           +ID+SYNA 
Sbjct: 313 KACVIDACFALRVCEILGVSYDKACCAL--LHMKQVH-MRMEEIKKPHLPLIIDDSYNAA 369

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PAS+  A+ VL Q +    GRRIA+LG++ E+G  +   H  +   ++  N+  V   G 
Sbjct: 370 PASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGS 427

Query: 410 -HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            H   + +A       S  + Y   +D     ++  L   DV++VK+S S    + + 
Sbjct: 428 DHAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 485


>gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 475

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 164/369 (44%), Gaps = 17/369 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           V G ++DSR +     FFA+ G   DGH F+  A+  GA   V+   +   +     P  
Sbjct: 25  VAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLAEVLPGGPPPGT 84

Query: 85  -VFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V  V D   AL  LA   R R     ++ ITGSVGKTTTKEM    L          G+
Sbjct: 85  AVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQRFAVLKTAGN 144

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YN  IG+PL L  +       + E+ M  LGEI  L  +  P I V+T +A +HL     
Sbjct: 145 YNTDIGLPLILLDLEDHHQVAVLEMAMRGLGEIARLASIAEPDIGVVTVVAESHLEFLGS 204

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E+IA AK E+ E L   G   LN  D     + A++       + +FG    AD +   
Sbjct: 205 LEKIAQAKGELVEALPADGVAILNAGDPRVRAMAARTR----ARVLTFGVEGGADVRAVA 260

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +     +   +++ G     V   + G       L    +  +L  D D     L    
Sbjct: 261 VESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAVGVVLGLDADAIAAGLGRAR 320

Query: 322 PKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           P        R  + Q G +TL  + YNA+P S  AA+  L Q++  G+ R +A+LGDM E
Sbjct: 321 PAS-----LRSEIRQAGSWTLFIDCYNASPTSTAAALQALRQVA--GDRRAVAILGDMFE 373

Query: 381 MGELSQSFH 389
           +G+ ++  H
Sbjct: 374 LGDWAEEGH 382


>gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 207/493 (41%), Gaps = 74/493 (15%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           PQ  V G +  DSR I   + F A+ G   DGHDF   A++KGA  V V       + ++
Sbjct: 23  PQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAATAIEKGA--VAVLGARPVGVPAI 80

Query: 82  SIPVFGVDD----------------VLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122
            +PV G  D                VL AL  LA        A   T++ +TGS GKT+T
Sbjct: 81  VVPVSGETDNRVMALESDTDGAGAAVLTALGDLAAYCTKSLAADGLTVVGVTGSAGKTST 140

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L  + +T A  GS+NN IG P T  R      F + E+     G I  L  L 
Sbjct: 141 KDLIAAVLRPLGETVAPPGSFNNEIGHPWTALRATASTKFLVLEMSARGEGHIAALAKLA 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V   +  AHL  F   E IA AK E+ E L   G   LN DD+    + +++ A 
Sbjct: 201 PPRIGVELNVGTAHLGEFGSREAIARAKGELVEALPVDGVAVLNADDAAVAAMASRTAA- 259

Query: 243 GIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             + ++ +G    A+ Q+R          ++   +   G +  V     G H   N L +
Sbjct: 260 --RVVF-YG---TAEAQVRATDVVLDAHARAAFTLHTAGGTAPVALKVHGEHQVHNALAS 313

Query: 300 LGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
             +       TA V  A+       P     +R       G  T+++++YNANP +M+AA
Sbjct: 314 AAVGLECGATTAQVAEALSGAGAASP-----RRMDVFTTDGGVTVVNDTYNANPDAMRAA 368

Query: 357 ISVLSQISPHGEG----------RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  L  +S H E           R  AVLG+M E+GE S   H  L   L   +I+    
Sbjct: 369 LRSLVLMSEHDEAGERLPGRDRRRTFAVLGEMGELGEESILEHDRLGRFLVRLDITSTIC 428

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLF--------------LFIQSSLVDGDVVVVKS 451
            G           R++H  +    M+G +                +++ L  GD+V+VK+
Sbjct: 429 VGSS---------RAVHALWQGAVMEGSWGSEAIRVDTRAEAVERLRAELRPGDLVLVKA 479

Query: 452 SNSCGFYRLINLL 464
           S S   + +   L
Sbjct: 480 SKSEKMWEVAESL 492


>gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R3021]
 gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 22.4-21]
          Length = 399

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 186/381 (48%), Gaps = 31/381 (8%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+ +P   V D   AL +LA   R +     +A+TGS GKTT KEM    L         
Sbjct: 16  SILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEA 75

Query: 140 I----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           +    G++NN IGVPLTL R+     F + ELG +H  EI + T LV+P+ A+I  IAPA
Sbjct: 76  VLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPA 135

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKS 253
           HL  F  +  +  AK EI+ GL K G   +N + +  ++ + +  +HA+     Y  GK 
Sbjct: 136 HLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK- 190

Query: 254 KNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTA 308
              D+ ++   Q +EQ  ++  V  QG+ +++    +G H  +N L    +   V    A
Sbjct: 191 ---DYSVKNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLA 245

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           DV   ++  S     + +G+ +   +      L+D++YNAN  S+ AAI VL       +
Sbjct: 246 DVKAGLEQRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----D 295

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
             RI  + DM E+GE S + H ++ + ++L N+  V   G     + +A+        +E
Sbjct: 296 AFRILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVLGKHFTDKTE 355

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +D L   I++ L     VVV
Sbjct: 356 MVDFLVPLIENQLQQNKKVVV 376


>gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
 gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
          Length = 474

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 209/470 (44%), Gaps = 51/470 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++  A+ G  +   P   V G +  DSR +     F A  G   DGHD+   AVQ G
Sbjct: 5   SLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAAAVQAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
           A  V+   ++        +P+  V D L A+ +LA A   R  + T+I +TGS GKTTTK
Sbjct: 65  AAAVLGTREVP------GVPMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++    + + +T A  GS+NN +G P T  +      + + E G   +G +R+L  +  
Sbjct: 119 DLIAQLTARLGETVAPPGSFNNELGHPYTALQAVPSTRYLVLEKGARGIGHVRYLCEVAP 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I+V+  +  +H+  F   E IA AK E+ E L   G   LN DD   + +  ++ A  
Sbjct: 179 PRISVVLNVGVSHIGEFGSQENIALAKGELVEALPADGLAVLNADDPLVDAMAGRTTA-- 236

Query: 244 IKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +  +G++ +AD +       +    ++  V  +G S  V     G H   N L    
Sbjct: 237 --RVVRYGEAAHADVRAVDVTLDERGRPAYTLVTPEG-SATVRLALTGRHQVWNTLAAAA 293

Query: 302 IVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +   L     ++  A+  L +        +R          T+ID+SYNANPASM  A+ 
Sbjct: 294 VARELGMPLVEIAVALGELGLVST-----RRMDVFERTDGVTVIDDSYNANPASMSVALR 348

Query: 359 VLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            L+ +   G GRR  AVLG M E+GE     H ++  + +   +  + + G      + A
Sbjct: 349 ALAGV---GAGRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLLVVG------EAA 399

Query: 418 LPRSIHVHYSETMDG--------------LFLFIQSSLVDGDVVVVKSSN 453
            P    +H+  T  G                  ++S L  GDVV+VK S 
Sbjct: 400 AP----IHHGATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLVKGSR 445


>gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
 gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
          Length = 468

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 177/391 (45%), Gaps = 27/391 (6%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR+  P + F A+KG  +D HDF+     +GA  
Sbjct: 7   GEAARLIPGATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAARGA-- 64

Query: 68  VVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
              +  +VA +   +++P     +   AL  LA   R R    ++A+TGS GKTT KEM+
Sbjct: 65  ---SAALVAHVPAGVTMPAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMI 121

Query: 127 T---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                A        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  L  
Sbjct: 122 ASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEILARLTA 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++      H    + +E +A   A +   L   G      DD++  + +  +    
Sbjct: 182 PTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNR 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I         +  D Q+       E   + +      + V    +G H A+N L      
Sbjct: 242 ILDFALHDAGRQNDAQVTGRLHGGE---LAIDTPAGVVTVRLRALGEHNARNALAATAAA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-S 361
                 +    + L  F P +GR + +   A +    T++D++YNANP SM+AAI VL +
Sbjct: 299 LGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAAIDVLAA 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           Q +P     R+ V+GDM E+G+   +FH ++
Sbjct: 359 QPAP-----RVLVIGDMGEVGDEGPAFHREV 384


>gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
          Length = 467

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 207/466 (44%), Gaps = 56/466 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASI-GS 80
           F   +  DSR + P   F A+ G   DGH F+  AV  GA  V+       +  AS+ GS
Sbjct: 26  FPFSVCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASAVLALRGPGREARASLPGS 85

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +    VD V  AL  LA   R R    +  ITGSVGKTTT++++   L+S++ ++   
Sbjct: 86  ADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTTRDLILRVLASVEPSHGAP 145

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            SYN  IG   T+  MP D    + E G +H GEI  L     P    +T + PAHL   
Sbjct: 146 KSYNTRIGCASTVLGMPPDTRNLVLEYGTNHPGEISALVASFPPQELFLTEVCPAHLEGL 205

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-------LG---------I 244
             ++ + +AK E+ E  +     + N+D++   LL+   HA       LG         I
Sbjct: 206 GDVQGVLAAKLELLESRQAERVTY-NFDNA---LLRDALHASFSAERSLGVGVSGGEVRI 261

Query: 245 KTIYSFGKSKNA--DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +       SK    D  LR+    + +SW    +L G+      H   +  A ++ +  G
Sbjct: 262 ERAEPRWTSKGPVLDLHLRE----AGRSWSFASRLWGR-----QHAYAWAFAWSVALRRG 312

Query: 302 IVSILTADV-DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           +      +V +T++       P  GRG   R   ++    ++DE+YNANPASM  A+  L
Sbjct: 313 VGEEALREVAETSL-------PLPGRG---RVLSDREGLWILDETYNANPASMGVALENL 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +S  G G   A+LG M E+GE S  +H ++  +  L  +    L G     L+  LP 
Sbjct: 363 HLLSSQGAGVSWAILGGMRELGETSPHWHREI--LGKLRGVDGAVLVGEEWAPLRSDLPD 420

Query: 421 SIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLINLL 464
            +        D   L  +    L    ++++K S S G  RL+ L 
Sbjct: 421 QVRW----VPDTAVLLEEGGPVLPKHALLLLKGSRSYGLERLLPLF 462


>gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
 gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
          Length = 453

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 158/326 (48%), Gaps = 12/326 (3%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + +P   V D   AL +LA   R +  A ++A+TGS GKT+ KEM    L    +     
Sbjct: 73  VDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMAAAILRECGEVLYTA 132

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NN IGVPLTL R+    DF + ELG +H+GEI + T L RP  A++  +A AHL  F
Sbjct: 133 GNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGF 192

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF 258
             +  +A AK EIF GL   G   +N D++ +   ++    L  KT++ F    ++  DF
Sbjct: 193 GSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQSM---LNDKTVWRFSPQAAEGVDF 249

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   ++ +   +     +  +     G H   N L    +   + A ++   + L 
Sbjct: 250 FASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAAALAMSVGASLEAVRQGLK 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                 GR   +  AL +    L+D+SYNAN  SM AA  VL+++     G R+ V+GDM
Sbjct: 310 QLQGVPGR--LFPIALTENKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDM 362

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHV 404
            E+G  ++  H  + E   L  I  V
Sbjct: 363 AELGADAEECHRQVGEAARLAGIDKV 388


>gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 18/234 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   V
Sbjct: 23  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 78

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 79  LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 133

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 134 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 193

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            + I  AK EI EGL+  GT  LN +D  F + + ++   G + + +F  + +A
Sbjct: 194 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSA 244


>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus
            DSM 2032]
 gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus
            DSM 2032]
          Length = 1011

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 201/489 (41%), Gaps = 34/489 (6%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            W    LL A  G   G      +  +  DSR + P + F A+KG  +DGH +I  A ++ 
Sbjct: 523  WNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQR 582

Query: 65   AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
            AG +V   + +       +    V D L AL  LA   R  L     + AITGS GKTT 
Sbjct: 583  AGAIV--AEWMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITGSSGKTTV 640

Query: 123  KEMLT-----------IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            KEM+              + ++ KT    G++NN +G+PL+L  +       + E+GM+ 
Sbjct: 641  KEMVASIFAEALQGSRTGMDAVLKTR---GNFNNLVGLPLSLLPLEAGHRLAVVEMGMNV 697

Query: 172  LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             GEI  L  +  P I  I  + PAHL     +  +A+AK E+F G+       +N DD  
Sbjct: 698  PGEIARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRPEAVRVVNLDDPH 757

Query: 232  FELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGI 288
                  K     +G     S G+      +  +     EQ     + ++G    V     
Sbjct: 758  VRAQAKKFAGEQIGFAVTPS-GRKFGPQVRATRPDNLGEQGMRFTLHIEGWRARVTVPVF 816

Query: 289  GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            G H   N +    I        +   + L  + P     KR       G   +++++YNA
Sbjct: 817  GAHNVSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSV--DKRLAVTELPGGLKVVNDAYNA 874

Query: 349  NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            NPASM A +  ++    H   R +A LGDM E+G  S+  H  +  +++      + L+G
Sbjct: 875  NPASMAAGLRTVAAFG-HRGCRHLAALGDMLELGAASEDLHAGIGALVASLGYDFLALTG 933

Query: 409  FHVLALKDALPRS--------IHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYR 459
                 +  A   +        +  +     D ++ +  +  L  GD +++K S      +
Sbjct: 934  MQATVMARAASAAGMKEENIRVFANPRAMADWIYPMLARGDLAAGDWLLIKGSRGMRMEQ 993

Query: 460  LINLLLEEF 468
            L++ L +  
Sbjct: 994  LLDELEQRL 1002



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 6   TFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T   L+QAI   +     G V    V  I+ DSR + P   F A++G   DG  +I  A+
Sbjct: 3   TLAKLVQAIAPGANRRLSGTVLAQPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAI 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
             G G + V  D+   +   ++PV  VDD   AL +LA A      S+  ++AITG+ GK
Sbjct: 63  --GKGCLAVVVDVDEGVDEWNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYN 144
           TT   ++   L +       IG+ N
Sbjct: 121 TTCSWLIEEMLVASGFRPGVIGTVN 145


>gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf
           [Rhodococcus equi 103S]
 gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
           [Rhodococcus equi 103S]
          Length = 506

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 144/506 (28%), Positives = 218/506 (43%), Gaps = 56/506 (11%)

Query: 1   MNPLWTFHDLLQAIQG--HSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD-- 55
           M P+ T   + QA+ G  H +   P   V+G +  DSR I P   F A+ G   DGHD  
Sbjct: 1   MIPM-TLAQIAQAVGGTLHDVDD-PSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHA 58

Query: 56  -------FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAA- 102
                   +     +  G+  +  + + + G+ ++ +    D     VL AL KLA A+ 
Sbjct: 59  AGAVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHDRDGSGAAVLAALGKLARASV 118

Query: 103 -RLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            RL +++  T++ +TGS GKT+TK++L   LS +    A  GS+NN +G P T  R   D
Sbjct: 119 DRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADAD 178

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+   L  
Sbjct: 179 TRFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPS 238

Query: 220 T---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
               G   LN DD     +  ++ A     +   G S NAD +    +   +Q+     L
Sbjct: 239 AADGGVAVLNADDPLVAAMADRTEA----RVVMVGLSGNADVRATDVR-LDDQARASFTL 293

Query: 277 QGKSMEV-----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              +  V     VH   G H   N L    +     A +D    AL    P   R  R  
Sbjct: 294 TCAAGAVPVTLAVH---GEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSAR--RME 348

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSF 388
                   T++++SYNANP SM+AAI  L  ++  G G   R  AVLG+M E+G  S   
Sbjct: 349 VRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVE 408

Query: 389 HIDLAEVLSLYNISHVWL--SGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439
           H  +       +++ + L   G  V A+             +IHV    +       ++ 
Sbjct: 409 HDAIGRFAVRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASA---IALLEQ 465

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            L  GD+V+VK+S S G + + + +L
Sbjct: 466 ELRAGDLVLVKASQSIGLWEVADAVL 491


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 216/467 (46%), Gaps = 32/467 (6%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +Q I G S  I     VN +  DSR I       FFA+ G   DGH+FI    Q G    
Sbjct: 11  IQQIIGASATITHDSMVNNLLTDSRKINNPFTSLFFALSGRR-DGHEFIGDVYQAGVRNF 69

Query: 69  VV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           VV       D++     L      VDDVL AL KLA+  R +    +I ITGS GKT  K
Sbjct: 70  VVFKLPVKVDLLRDANFLV-----VDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIVK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   L + KK      SYN+ IGVPL++ +M    + GIFE G+S  GE+  L  +++
Sbjct: 125 EWLYQLLCADKKIIRNPKSYNSQIGVPLSVWQMDDQHNLGIFEAGISTTGEMERLERMIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I ++T +  AH   FSG E+    K ++F        +   YD     LLK K+   G
Sbjct: 185 PTIGILTHMGSAHDEGFSGPEKKLEEKLKLF---THCSMVIYQYD----ALLKYKARVPG 237

Query: 244 IKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            KT +++ +  +  D  +      S + ++    +GK +E +   I     +N ++    
Sbjct: 238 -KTKFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWAT 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVL 360
           +  L  D   A   L    P        R  L QG    ++ID+SYN++  S++ A++ L
Sbjct: 297 MLALGYDSQVADDRLERLVPVS-----MRMELKQGINNCSIIDDSYNSDFQSLEIALNFL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +Q + H    R  +L D+ + G      +  +A++LS  NI  V   G  + A +     
Sbjct: 352 NQQNQH--QTRTLILSDIFQSGLEQAVLYQQVADLLSQKNIDKVIGVGKAISAQQQLFNI 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   Y++T D L + +    ++ + +++K S S  F R+   L+++
Sbjct: 410 PLKYFYADT-DSLLMALADLTLEDETILIKGSRSFEFERISRALVQK 455


>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 196/445 (44%), Gaps = 30/445 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +IDSR + P   F AI G H DGH +   AV+ GA  V+    + A       P   V D
Sbjct: 28  TIDSRDVPPGGLFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRPVAA-------PHVLVPD 80

Query: 91  VLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
              AL  LA A   R  + + + +TGS GKT+TK++L   L  +  T A  GS+NN +GV
Sbjct: 81  ATVALGLLARATHDRLDRLSTVGLTGSSGKTSTKDLLAHVLEPLAPTVAPTGSFNNELGV 140

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+ R      + + E+G    G I  L  +  P +AV+  +  AH   F  +++ A A
Sbjct: 141 PLTVLRADPSTRYLVVEMGARGRGHIAALCRISPPDVAVVLNVGTAHQGEFGSVDDTAVA 200

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+ E L   GT  LN DD     +  ++       + +FG  +  D +L      +  
Sbjct: 201 KGELVEALGPGGTAVLNADDPRVAAMAGRT----AGQVLTFG--RGGDVRLVDLLTDAAG 254

Query: 270 SWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                   G   E  V   IG H   N   T  +   L  D+ T    L+    +     
Sbjct: 255 HPRITLAHGPDRETFVLPQIGGHHGSNAAATAAVAVALGVDLATVAARLATATVR----S 310

Query: 329 RYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELS 385
            +R A  +      ++D+SYNANP S+ AA+  ++ +   G+ GR + VLG+M E+G  S
Sbjct: 311 PHRMARHVRPDGLVVVDDSYNANPESVAAALRSVADLGAPGDGGRTVVVLGEMLELGADS 370

Query: 386 QSFHID---LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
              H     LA  L +  +  V      V+    AL   +       +      +   + 
Sbjct: 371 ADHHRRIGALARELGIGLVVAVGPGASPVVEGAGALATGV-----PDVAAAVELLHEQVG 425

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
            GD+V+VK+S S    R++  LL +
Sbjct: 426 PGDLVLVKASRSARLERVVTALLAD 450


>gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           sp. RS-1]
 gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseiflexus sp. RS-1]
          Length = 490

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 137/478 (28%), Positives = 211/478 (44%), Gaps = 68/478 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP------- 84
           IDSR    +  F A++G   DGH+F+  A  +GA   +V  D ++++ SL  P       
Sbjct: 41  IDSRQATSECLFVALRGERVDGHEFLADAAARGARGALVRRDKLSNL-SLERPYAVIDPV 99

Query: 85  --------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                         +  VDD   ALN+LA   R +    +I +TGSVGKT+TKE+    L
Sbjct: 100 TGEGLEQATPDSVLLIAVDDPQAALNRLAAYHRGKYHPVVIGVTGSVGKTSTKEVTASVL 159

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +T     SYN+   +P+ L ++  D    + E+GM   GEI  L  L RP + ++T
Sbjct: 160 QRSFRTLKSPRSYNSEASLPIVLLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVT 219

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKT 246
            + P+HL     IE I  AK+E+ + L   G   LN DD    +  E+ +A+        
Sbjct: 220 NVGPSHLERMGSIEAIQRAKSELPQALPDDGFAILNIDDLRVRAMAEVTRARP------- 272

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + +G    AD     W    E       LQG S  V + G  +++    L  LG  S+ 
Sbjct: 273 -FFYGLDPAADL----WADSIESRG----LQGISFRVHYQGDAFYLT---LPLLGRHSVH 320

Query: 307 TADVDTAI--------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           TA    +         +A+      E    R          TLID++YNA+PASM AA++
Sbjct: 321 TALAAASAGLLLGMEWEAIIAGLRDESAQLRLLAVPGVNQTTLIDDTYNASPASMLAALN 380

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHV 411
           +L+++     GRRIA+LGDM E+G + +  H        ++A  L        W++    
Sbjct: 381 LLAELE----GRRIAILGDMLELGSVEEEAHRRVGARVAEVARFLITVGRRARWIADE-- 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            AL+  +     V   +  D       S L  GD+V++K S       ++  L +  P
Sbjct: 435 -ALQAGMAPD-QVWSVDDNDEAADLAMSCLAPGDIVLIKGSRGMLMESIVARLQQRRP 490


>gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
 gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
          Length = 478

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 223/478 (46%), Gaps = 37/478 (7%)

Query: 11  LQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + AI G  +   P   V  G  IDSR +     F A  G H DG+DF + AVQ GAG VV
Sbjct: 9   MTAITGSRLCAGPSDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAAVQAGAGAVV 68

Query: 70  V----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +    + ++ ++       V   +D    L  LA   R R    ++ ITGS+GKTTTK+M
Sbjct: 69  LTREPSRELCSAADQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGSIGKTTTKDM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  + +A IG+ NN IG+PLT+   P D    I E+GMS  GEI  L+    P 
Sbjct: 129 VAALLSTRYRVHATIGNRNNLIGMPLTVLSAPEDTQALILEMGMSASGEIERLSRCAAPT 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKA 237
            A+IT I  +H+      + IA AKAEI  G+        E++  + L+ +D F   +  
Sbjct: 189 HAIITRIGTSHIGMLGSRDAIARAKAEIVSGMIPWSAPECERSPLLVLSSEDDFTSFISD 248

Query: 238 K-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMA 293
           + +   G++ I   G   +AD  +R+ +   +Q     +L    G  ++      G H  
Sbjct: 249 RFAEPAGVR-IALAGTRADADVTVRRCRL-DDQGCASFELSFRDGCQLKANLAAPGAHAV 306

Query: 294 QNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           Q+  +   +   + +   D+  A  AL++         R +  L  G   +ID+SYNA+P
Sbjct: 307 QDAALAAALAYDLGVSPRDMIAAFGALAITS------HRQQIRLASGGAKIIDDSYNASP 360

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM A + +L  +S     RRIAVLG+M E+GE S+  H  +    +   +  +   G  
Sbjct: 361 ESMAAGLDLLLALSG--ARRRIAVLGEMGELGERSERMHALVGAYAAAKQLDLLVCVGHE 418

Query: 411 VL-ALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
               + DA     +P +  +  + +   +     S L  GD+V+VK S   G  R + 
Sbjct: 419 AARTMADAARLMGMP-AHRIEIASSAHAVLDRFGSGLGRGDLVLVKGSRFVGLDRFVE 475


>gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. D2]
 gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 431

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 186/385 (48%), Gaps = 25/385 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDKRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIGV
Sbjct: 74  NCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264
           K E+++ L K   I F+++D+++   +    + +   T   +Y  G+ + N+ +   +WK
Sbjct: 194 KGELYDFLRKKDAITFIHHDNAYLMNIAQGLNLISYGTEDDLYVNGQITDNSPYLAFEWK 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +         G+  +V    IG +   N L  + I      +     +AL+ + P+ 
Sbjct: 254 AGKD---------GERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQN 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G 
Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            S + H  + + +       VWL G
Sbjct: 357 ESPAEHQKIVDYIKESGFEKVWLVG 381


>gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
 gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
          Length = 466

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 212/477 (44%), Gaps = 36/477 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +F +   A+QG  +      +GF + +SIDSR++     F  ++G   DGH +I 
Sbjct: 1   MKNLLSFDETSIAVQGMLLKNHTKARGF-SSVSIDSRTVKDGSLFVPLRGEKQDGHRYIR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------LNKLAVAARLRSKA-- 108
            A++KGA L   +   + S+ S  I    + D   A        L  L  AAR   K   
Sbjct: 60  SALEKGAVLFFADEKFL-SVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFP 118

Query: 109 --TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               + ITGS GKTTTKE+    LS         G+ N+  G+PL++  +  + + GIFE
Sbjct: 119 NLIKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSETGLPLSVFEVRDEHEVGIFE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           LGM+  GE++ +T ++ P   +IT I  AH+      + IA  K +IF   +K    F+ 
Sbjct: 179 LGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQIFSFFDKDCMGFVP 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D  F + L+A    LG    Y        +  L+  K+   +      +  K  E+   
Sbjct: 239 -DCPFTDFLQA--VPLGKVVCYE-------NTTLKNIKKIESKGMYGSTIFYKDEEICFP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N    + +   L   V    + L    P  GR +       QG    + + Y
Sbjct: 289 LAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQ-----FMQGDVDCLFDCY 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP SM AA++V S+     +G++ AVLG M E+G+ S + H  +    +  +I  ++L
Sbjct: 344 NANPDSMSAALAVFSETKV--QGKKAAVLGSMLELGKESAAAHKKICAQAAASDIDFIYL 401

Query: 407 SGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            G  +      +    +++       MD L   +  +L  GD V++K+S      RL
Sbjct: 402 FGKEIGDSGKNINWNGKTVFYFDESEMDALGKALDENLHRGDFVLLKASRGLALERL 458


>gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
          Length = 431

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 186/385 (48%), Gaps = 25/385 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G     +  VD
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDKRYIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIGV
Sbjct: 74  NCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264
           K E+++ L K   I F+++D+++   +    + +   T   +Y  G+ + N+ +   +WK
Sbjct: 194 KGELYDFLRKKDAITFIHHDNAYLMNIAQGLNLISYGTEDDLYVNGQITDNSPYLAFEWK 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +         G+  +V    IG +   N L  + I      +     +AL+ + P+ 
Sbjct: 254 AGKD---------GERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQN 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383
            R +  +   N    TLI ++YNANP SM AA+     ++ PH    ++ +LGDM E+G 
Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            S + H  + + +       VWL G
Sbjct: 357 ESPAEHQKIVDYIKESGFEKVWLVG 381


>gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase
           protein [Xanthomonas albilineans]
          Length = 501

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 20/370 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ IS D+R +A    + A++G  +DGH F   A  +GA  ++V   +      + +P  
Sbjct: 24  IDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLVERRLP----QIELPQI 79

Query: 87  GVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYACI 140
            V D   AL ++A A   R +AT + AITGS GKT+ K +L   L    +      YA  
Sbjct: 80  VVADTQLALARIA-AGMQRGRATRVAAITGSNGKTSVKALLLAILQYACRLDGGSVYANP 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NN IG+PL +   P D D+ I+E+G    G+I +LT +  P ++++  IAPAHL   
Sbjct: 139 GNHNNEIGLPLAVIAAPDDADYAIYEMGAGKPGDIAYLTDIAPPRVSLVNNIAPAHLERM 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +  +A  K  I+  L   GT  +N DD+F    + +  A     +  FG    A    
Sbjct: 199 GSLLGVAQTKGAIYAALPADGTAVINIDDAFGLWFEQQLSAASRPRVLRFGLQHGAHVTA 258

Query: 261 RKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            + +  ++++ ++ +  QG++ E      G H   N L    +   L          L+ 
Sbjct: 259 TRIRMAADRTHFVLLTPQGEA-ETTLPLPGRHNLLNALAAAALALALDVAPARIAAGLAQ 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  GR   +      G   LID+SYNANP S+ AAI  L+ I     G R  VLGDM 
Sbjct: 318 VQPVPGRQISHTL---PGGAVLIDDSYNANPGSLAAAIDALAAIG----GERWLVLGDMR 370

Query: 380 EMGELSQSFH 389
           E+G  +++ H
Sbjct: 371 ELGAGAEALH 380


>gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 509

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 201/475 (42%), Gaps = 51/475 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P   F A+ G   DGHDF   AVQ GA + V+    V     +  P  GVD
Sbjct: 34  VEFDSRAVGPGGLFLALPGARSDGHDFAAAAVQSGA-VAVLAARPVGVPAIVVRPDGGVD 92

Query: 90  DVLGALN------------------KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              GAL                                II +TGS GKT+TK++L   L+
Sbjct: 93  SASGALEHDTDGSGAAVLAALARLAAAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLA 152

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            + +  A  GS+NN +G P T+ R   D DF + E+   H G I  L  +  P +AV+  
Sbjct: 153 PLGEVVAPPGSFNNELGHPWTVLRATRDTDFLVLEMSARHPGNIAALAAIAPPSVAVVLN 212

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +  AHL  F   E IA  KAE+ + +  +G + LN DD     +  ++ A  ++      
Sbjct: 213 VGTAHLGEFGSREAIAKTKAELPQAVGPSGVVILNADDIAVAAMAEQTDARVVRI----- 267

Query: 252 KSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-----VHHGIGYHMAQNMLMTLGIV 303
            S++    +  W       E +     L  +  EV     VH   G H   N L     V
Sbjct: 268 -SRDPGSDIDVWAGPVTLDELARPRFTLHTRDGEVDVNLAVH---GDHQVSNALCA-AAV 322

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++        +           R  R + +      T+I+++YNANP SM+A +  L+ +
Sbjct: 323 ALECGATPQQVADALAAAGPASR-HRMQVSTRADGVTVINDAYNANPDSMRAGLKALAWM 381

Query: 364 S-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLAL 414
           +       P G+ R  AVLG+M E+G+ + + H  +       ++S + +  SG  + A+
Sbjct: 382 ARQTAGGQPGGKRRSWAVLGEMAELGDDAITEHDAIGRFAVRLDVSRLLVVGSGRAMNAM 441

Query: 415 KDALPRSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                         TM    D     ++  L  GDVV+VK+SNS G   L   L+
Sbjct: 442 HHGAVMEGSWGSESTMVADADAALTVLRDELQPGDVVLVKASNSVGLGALAEALV 496


>gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
 gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
          Length = 446

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 212/442 (47%), Gaps = 26/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG  +DG+ F   A++KG    +++    A   +  + +  VD
Sbjct: 24  ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAEADNDRLIL--VD 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    ++A   R   +  +I ITG+ GKTTTKE+++  L+   +     G++NN +GV
Sbjct: 82  DCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNNDVGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 142 PKTLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNVGRAHLLGFGSFEGVKRT 201

Query: 210 KAEIFEGLEK-TGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQ-----LRK 262
           K E+++ L+   G +FLN  ++   E+ + +     +  I ++G+S +A+ Q        
Sbjct: 202 KGELYDYLKAHDGLLFLNESNADLVEMARQRE----MNRIMTYGQSDDANVQGEVLDCAP 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           + + + ++    + + ++ +V  H IG +   NML  + I        +    ALS + P
Sbjct: 258 FLRFTWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVTPEQINHALSHYIP 317

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +    A N+    LI ++YNANP+SM AA+     ++      ++A+LGDM E+G
Sbjct: 318 ANNRSQLEVTAKNK----LIVDAYNANPSSMAAAVENFKLMNVE---HKMAILGDMRELG 370

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E+S   H  L + L+      VWL G      + A  +  +V      D +   I +   
Sbjct: 371 EVSALEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRKFKNV------DEVKAEIAAHCP 424

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +   +++K SN    + L  LL
Sbjct: 425 ENYYILIKGSNGIKLFELPELL 446


>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 465

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 192/409 (46%), Gaps = 18/409 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+   + G +        +N +  DSR++ P + FF I+G ++DGH+F   A  +GA
Sbjct: 4   TLGDVQHCLTGMAEECREFAVINAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + VV + M   +   ++PV  V D + AL +LA   R    + ++A+TG+ GKTT KEM
Sbjct: 64  -VAVVASRMPEGV---TVPVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKEM 119

Query: 126 LTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           L   +S   ++ K Y    + NN IG+P+++ +     +  I ELG+S  G++  L  + 
Sbjct: 120 LAAVVSRKFTVAKNYR---NLNNQIGLPVSMLKADSGQEVWIMELGISVKGDMEELAVIA 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT + P HL     +  +A AK+ + + + + GT  ++ D  + EL  A +   
Sbjct: 177 SPDVAVITNVGPGHLEGLGDVAGVARAKSSLLKYMRQDGTAIVSKD--YPELWAAATELT 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G    +S      +   +        +    ++      E      G H A+N+      
Sbjct: 235 GSPVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQGEFTAPFCGDHYAENVACVAAA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + L    D  +  +      E   +R+ C    G   +ID++YNANP SM    S+ + 
Sbjct: 295 ANALGLPFDDIVAGVQAV---EADCQRF-CCRPMGDALVIDDTYNANPLSM--GRSIRTA 348

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++   +   + VLGDM E+G+ +Q+ H +L  ++       V+  G H 
Sbjct: 349 VAMAKDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAVFFKGAHC 397


>gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
 gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
          Length = 507

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 203/483 (42%), Gaps = 51/483 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS +S+       F  I G   D HDFI  A ++G  + + + D +A  G+  +    V+
Sbjct: 29  ISTNSKVGDSDTLFVPIVGERVDAHDFIADAYRQGIRVTLTSKDEIAE-GTEDMVYIKVN 87

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             + AL +L    R  S   II ITGSVGKTTTKEM+  A S+       IG+ N+ +G+
Sbjct: 88  HTVEALQRLGEYHRDHSNVPIIGITGSVGKTTTKEMIAAAFSTRSNVLKTIGNMNSQVGL 147

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P  +  +    + GI E+GMS  GE+  +  + +P +AV+T I  +H+      E I   
Sbjct: 148 PQMMLMLEDTHEVGIIEMGMSEFGEMERIAKVAKPKMAVVTNIGVSHIGQLKTQENIRKE 207

Query: 210 KAEIFEGLEKTGTIFLNYDDSFF------------------------ELLKAKSHALGIK 245
           K  I     +   + LN DD                           +L +    +L   
Sbjct: 208 KLNIVNYFTEDSILLLNGDDQLLLEIYDEYRKDNSSVKEKTQNNGSVDLSEMTRRSLNKA 267

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTL 300
           ++Y+FG + +        K   E +      +  + E +   I     G H   N L  +
Sbjct: 268 SVYTFGTNPDCTIYADNIKTDGESTTFTFHYKNGTKEELVDDITLSVLGKHNILNALAAI 327

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L  D   A + L  + P   RG+  +        T+ID++YNA+P SMK AI V+
Sbjct: 328 FFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKV----NGITIIDDTYNASPDSMKGAIHVI 383

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN------------ISHVWLSG 408
             +    E ++  V  D+ E+G++S+  H ++ E L+               I  V   G
Sbjct: 384 MDMPK--EHKKFIVFADILELGDISKKCHYEVGEYLAKQCKIEKACGKESTFIDEVITIG 441

Query: 409 FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + D +  +   I+       +  F +I+++L   DV+++K S       ++  L 
Sbjct: 442 EEAKYILDGVRENGEDINTKSFMEREEAFKYIKTNLTKRDVILLKGSRGMKLDLIVERLK 501

Query: 466 EEF 468
           EE 
Sbjct: 502 EEL 504


>gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
 gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
          Length = 461

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 211/443 (47%), Gaps = 41/443 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR+  P   F A+KG  +D HDF+  AV  GA  + V+       G+ S+P  
Sbjct: 24  VASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKAVLSGAAALGVSLG-----GNFSVPCV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSY 143
              D L  L    +  R +  A I A+TGS GKTT KEM   A S +K+ +  +   G++
Sbjct: 79  KCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKTTVKEM---AYSILKQGFNAMCTNGNF 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL R+   +D+ I E G SH  +I+  +  V+   AVIT +  AH+  F   
Sbjct: 136 NNDVGVPLTLLRLDEKLDYAIIEQGASHKEDIKRTSEFVQADAAVITNVGQAHIEGFGSA 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             +   K+EI + +   G I +    S +  E  K    A     + +FG + +   ++ 
Sbjct: 196 YGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDYKEAFLQGKMLTFGYNDDDFVKVS 255

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + K  S++    +  +G+S ++  + +G H AQN      +   L  D       L    
Sbjct: 256 EVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAAAAALCLALGCDFKYIKPGLENTS 315

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR +      N   FTLID++YNA+  ++ + I  LS  +    G ++ V GDM E+
Sbjct: 316 SVKGRLQ----VKNFAGFTLIDDAYNASFNAVLSGIDTLSSFA----GFKVMVFGDMGEL 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLF 434
           G+ + S H    E + LY  + +     ++L     L R       SI  H+ ++ D L 
Sbjct: 368 GDEAVSLH----EKVGLYAKNKI-----NLLLCLGPLSRHSVEKAGSIARHF-DSHDALA 417

Query: 435 LFIQSSLV---DGDVVVVKSSNS 454
            F++  ++   D  V++VK S++
Sbjct: 418 AFLKDEVLKRHDNAVILVKGSHA 440


>gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 328

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 125/235 (53%), Gaps = 18/235 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   
Sbjct: 22  SGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLV 77

Query: 88  VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G
Sbjct: 78  VLDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 132

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F 
Sbjct: 133 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFG 192

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           G + I  AK EI EGL   GT  LN +D  F + + ++   G + + +F  + +A
Sbjct: 193 GPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRA---GDRNVLTFALTDSA 244


>gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 18/234 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   V
Sbjct: 23  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVQGA----ALPQLVV 78

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEML   L +     A  G+
Sbjct: 79  LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 133

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 134 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 193

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            + I  AK EI EGL+  GT  LN +D  F + + ++   G + + +F  + +A
Sbjct: 194 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSA 244


>gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
 gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
          Length = 521

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 148/533 (27%), Positives = 219/533 (41%), Gaps = 83/533 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PL +   L Q +    IGI        V  + IDSR ++    F A+KG  +DGHDF 
Sbjct: 1   MIPL-SLRQLAQVLNAELIGIEHASDHALVTQVVIDSRKLSTGCLFVALKGARFDGHDFA 59

Query: 58  LHAVQKGAGLVVVN-------------------------------------------TDM 74
             A+  GA  ++VN                                            + 
Sbjct: 60  EEAITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNA 119

Query: 75  VAS------IGSLSIPV--FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            AS      + S+ +P+    V D   AL +LA   R +  A ++A+TGS GKT+ KEM 
Sbjct: 120 TASKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMT 179

Query: 127 TIALSSIKKTYA-------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
              L   K             G+ NN IGVPLTL R+  + DF + ELG +HLGEI +  
Sbjct: 180 AAILRQCKTPTKKNSHVLYTSGNQNNDIGVPLTLLRLTAEHDFVVIELGANHLGEIAYSA 239

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP   ++  +A AHL  F  +  +A AK EIF  L   G   +N D   +       
Sbjct: 240 GLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWP------ 293

Query: 240 HALGIKT-----IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           H  G+ +      ++F      DF     K  S+ +   +     S+E+    +G H   
Sbjct: 294 HWQGMLSQQRVWRFAFNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVA 353

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD++   K L+  H   GR   +   L +G   L+D+SYNAN  SM 
Sbjct: 354 NALAAAALAMSVGADLEAIAKGLAQSHATPGR--LFPILLAEGKL-LLDDSYNANVGSMI 410

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA  +L+++     G R+  +GDM E+GE +   H  +        I  V   G     L
Sbjct: 411 AAAQLLAEM----PGYRVMAVGDMGELGETAVDCHRQVGSAARQAGIDKVLSVGTLSQQL 466

Query: 415 KDALPRSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             A     H H    +   L   +Q+  +    +++K S S G   ++  L E
Sbjct: 467 SSASGNGEHFHDQVVLTARLKQLLQAHPI--ITLLIKGSRSSGMENVVQALQE 517


>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
 gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 207/471 (43%), Gaps = 35/471 (7%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----- 76
           P   V G +  D+R +     F A+ G   DGHDF   AV+ GA  V+   ++ A     
Sbjct: 22  PGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQAVEAGAVAVLAAREVDAPAIVV 81

Query: 77  ---SIGSL---SIPVFGVDDVLGALNKLAVAARLR--------SKATIIAITGSVGKTTT 122
              + G     S+ + G  D  GA    A+A   R         + T++ +TGS GKT+T
Sbjct: 82  PPLAAGEAHERSVALTGDKDGSGAAVLAALAKLARYVVQRLAEGELTVVGVTGSSGKTST 141

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L  +  T A  GS+NN +G P T  R   +    + EL     G I  L  + 
Sbjct: 142 KDVIAQLLEPLGPTIAPPGSFNNELGHPWTALRAGAETRHLVLELSARGPGHIAHLAAIA 201

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V+  +  AH+  F   E IA  K E+ E L + G   LN DD     + +++ A 
Sbjct: 202 PPKIGVVLNVGSAHVGEFGSREGIAKTKGELVEALPEDGVAVLNLDDPLVAAMASRTKA- 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMT 299
             + ++  G+S +A  +        E   S+  +   G++ +++  H  G H   N L  
Sbjct: 261 --RVVF-VGESPSAQVRAENITLDDEARASFRLITPAGEAGVKLPLH--GEHHVGNALSA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L A  +     LS    +  R  R          T++++S+NANP SM+A +  
Sbjct: 316 AAVALELGATPEEIATRLSALERRSAR--RMEVVTRPDGVTILNDSFNANPESMRAGLKA 373

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ ++     R  AVLG M E+G  S + H ++  ++   NI+ + + G    A+     
Sbjct: 374 LAAMTRETGRRSWAVLGVMGELGADSVTAHDEIGRLVVRLNIAKLVVIGPEAAAMHQGAH 433

Query: 420 RSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +        T+    +     +   L  GDVV+VK+S + G +R+   LLE
Sbjct: 434 QEGSWGEESTLVPDVEAAAALLHDQLRPGDVVLVKASKAAGLWRVAEALLE 484


>gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
 gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
          Length = 975

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 208/449 (46%), Gaps = 34/449 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR + P   F A++G  +D HDF+  A   GA  ++        + +  +P  
Sbjct: 520 VSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQ----GVAACGLPGI 575

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSY 143
              D L A   LA   R +    +IA+TGS GKTT  +ML   L++ +   +  A  G++
Sbjct: 576 EAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDRRLATQGNF 635

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+PLTL R+       + ELGM+H GEI +L  L  P +A++      H      +
Sbjct: 636 NNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLAEPTVALVNNAQREHQEFMHSV 695

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A     +   L +TG      DD+   +  A++     + +  F   + A+  +   
Sbjct: 696 EAVAHENGSVLAALPQTGVAVFPADDAQTAIWVAQAAG---RRVLRFALREGAEAGVE-- 750

Query: 264 KQCS-----EQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            + S      Q  + +QL   +   EV    +G H A+N L          A +D   + 
Sbjct: 751 AEVSGHAFYRQGQLRLQLHTPTGHAEVGLQLLGRHNARNALAATAAALAAGAPLDAICRG 810

Query: 317 LSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           L  F P  GR   +R RCA ++    LID+SYNANP S++AAI VL+++     GR + +
Sbjct: 811 LEAFAPVAGRLVPRRLRCADDRTLL-LIDDSYNANPDSVRAAIDVLAELP----GRSLLL 865

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMD 431
           LGDM E+G+   +FH ++    +   ++ +W  G        A   +      H  + MD
Sbjct: 866 LGDMGEVGDNGPAFHAEVGTYAAQRGVAALWACGAMTAQAVAAAQAAGLAAAKHQPDLMD 925

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             F    ++L + D V+VK S    F R+
Sbjct: 926 --FTLDAAALREFDTVLVKGSR---FMRM 949


>gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
 gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
          Length = 485

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 205/480 (42%), Gaps = 63/480 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + I +R + P   F A+ G   DGHDF   A   GA  V+V     A +     P   VD
Sbjct: 28  VVIGTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82

Query: 90  DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA   VA         IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLT  R   +  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI E L   G   LN  D+    +  ++    I         +  D  +  W + 
Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261

Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310
           +        L   S  +    G     +   LMT+G                   +  D+
Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDI 317

Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363
           D        +ALS    +     R +         L+++ YNANP SM A+++ +  +  
Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375

Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
              +   + R +AVLGDM E+G+ S   + +     S    +H   +GF V +A+ D   
Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE-----SGRRAAH---AGFDVIIAVGD--- 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG---------DVVVVKSSNSCGFYRLINLLLEEFPA 470
            + ++      +G  + + S++ D          DVV++K+S      R+   + EE  A
Sbjct: 425 EAKNIAEGARAEGARVIV-STVEDASGSLGWTSHDVVLLKASRGLALERVGRDVFEEREA 483


>gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549]
          Length = 453

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++I+S  +  Q+  F     + DGH+FI  A+   A  +     +V+    L IP  
Sbjct: 23  IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANRAKAI-----LVSKKQGLDIPQV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L  LA   R      II++TGS GKT+ KEM+   L   +K +   G+ NN+
Sbjct: 77  VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+T+   P DVDF + E G +  GEI+    +++P+IA+IT +   HL N   ++ +
Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L + G   +N DD   E +   +  L  K I     +  AD  +  ++  
Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRVT 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +++++  +  +     IG H   N +  L I S++   ++      +  + K  +
Sbjct: 253 SNSYAVKIRIFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R+         TLID++YNA+  +++AAI  L++     +G++I  +  M E+G+ ++
Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           ++H  + + L   N+  V+L G
Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387


>gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 526

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 210/474 (44%), Gaps = 46/474 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ---------KGAGLVVVNTDMV----A 76
           +  DSR++ P   F A+ G   DGHDF   AV          +  G+  V  D V    A
Sbjct: 34  VEFDSRAVTPGGLFLALPGARSDGHDFAATAVAAGAVGVLAARPVGVPAVVVDPVRPDPA 93

Query: 77  SIGSLSIPVFGVDD-------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           + G+  +    VD         L  L     A  +    TII ITGS GKT+TK+++   
Sbjct: 94  APGTAGVLEHDVDGSGAAVLAALARLASAVAAELVAGGLTIIGITGSSGKTSTKDLIAAV 153

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+ + +  A  GS+NN +G P T+ R     D+ + E+   H G I  L  +  P IAV+
Sbjct: 154 LAPLGEVVAPPGSFNNELGHPWTVLRATRSTDYLVLEMSARHPGNIAALARIAVPSIAVV 213

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +  AHL  F   E IA+ K+E+ + + ++G + LN DD     +  K+ A     +  
Sbjct: 214 LNVGTAHLGEFGSREVIAATKSELPQSVPESGVVILNADDPAVAAMADKTAA----RVVR 269

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGYHMAQNMLMTLGIVS 304
            G+   A             +     L   + +V     VH   G H   N L    +  
Sbjct: 270 VGRGAEALDVCADGVSLDALARPSFTLHTGAADVPVTLAVH---GDHQVSNALCAAAVAL 326

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A  +    AL+   P      R +    +   T+I+++YNANP SM+A +  L+ +S
Sbjct: 327 ECGATPEQVAAALATAGPVS--RHRMQVTAREDGVTVINDAYNANPDSMRAGLKALAWMS 384

Query: 365 PHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
             G  +GR  AVLG+M E+G+ + + H  +  +    ++S + + G         H   +
Sbjct: 385 RGGASKGRSWAVLGEMAELGDDAITEHDRIGRLAVRLDVSRLIVVGSGRPMSAMLHGAVM 444

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + +   S  +  ++T D     +++ L  GDVV+VK+SNS G   L + L+ + 
Sbjct: 445 EGSF-GSEAIPVADT-DAALEILRAELRPGDVVLVKASNSAGLGALADALVSDV 496


>gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
 gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
          Length = 468

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 202/472 (42%), Gaps = 40/472 (8%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF+     +    
Sbjct: 7   GEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVAAR---- 62

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                 +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT KEM+ 
Sbjct: 63  GAAAALVAHAPAGVAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  D Q+       E   + +     ++ V    +G H A+N L       
Sbjct: 243 LDFALHDAERQNDAQIVGRMHGDE---LAIDTPAGAVTVRLRALGEHNARNALAATAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
                +    + L  F P +GR +    ++      T++D++YNANP SM+AAI VL + 
Sbjct: 300 GAGVALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAAIDVLAAH 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +P     R+ V+GDM E+G+   +FH ++        I  ++       AL DA  R  
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALF-------ALGDA-SRDA 406

Query: 423 HVHYSET---MDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
              Y +T    D +   + + L  G      V+VK S      R+++ L  +
Sbjct: 407 CTAYGDTARHFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum
           aromaticum EbN1]
 gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Aromatoleum aromaticum EbN1]
          Length = 466

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 189/402 (47%), Gaps = 35/402 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T H+  QA+    +  +P  F + +  DSR I   + F A++G  +DGH+F++ A   GA
Sbjct: 2   TLHEAAQALG--VVATMPGNF-SSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADGA 58

Query: 66  GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +V+     +    S +P+  V+D   AL +LA   R R +  +I +TGS GKTT KE
Sbjct: 59  AAALVDARWAGTQPVPSPLPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVKE 118

Query: 125 MLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           M T  L +  +          A  G+ NN IG+PLTL  +       I E+GM+  GEI 
Sbjct: 119 MCTAVLRAQARRDGHGAEAVLATAGNLNNDIGLPLTLLELRSSHRAAIVEMGMNRPGEIA 178

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS---FFE 233
           +L  L RP +AV+T    AHL     +  IA  K  I+E L   G   +N DD+   ++ 
Sbjct: 179 YLAGLARPTVAVVTNAQRAHLQGMGTVIGIAREKGAIYEALGPDGVAVINADDTQAGYWR 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHHGIGY 290
            L A    L    ++S   +  AD       +C+ +   S + +      + V     G 
Sbjct: 239 ELNAARRTL----VFSL--TPRADVA----GECTLRGLGSHLVMTTPAGRIAVDLQVPGE 288

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A+N            A  +   + L+ +    GR +R R   N     ++D+SYNANP
Sbjct: 289 HNARNATGAAAACLAAGASPEAVAEGLAAYTGTRGRLQR-RAGPNGAV--VLDDSYNANP 345

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            S++A I VL+       G++I VLGDM E+G  S   H ++
Sbjct: 346 DSLRAGIDVLAATP----GQKILVLGDMGEIGWTSAQVHDEI 383


>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
 gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
          Length = 473

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 176/373 (47%), Gaps = 26/373 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85
           + IDSR +     F A++G   DGH +I     KGA L VV+    AS G          
Sbjct: 33  VVIDSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS 92

Query: 86  -FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              VDD +  L ++AVA R      + A+ GS GKTTTKE++   L    K +   G+ N
Sbjct: 93  YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELIASVLGVGFKVHMSRGNRN 152

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH+GVPLTL +M  D +  + E+G++H GE+  L  +  P   ++T I   HL     ++
Sbjct: 153 NHLGVPLTLLQMKRDTEIAVVEMGINHPGEMELLASIAMPTHGLLTNIGHEHLEFLHDLQ 212

Query: 205 EIASAKAEIFEGLEKTGTI-FLNYDDSFF-----ELLKAKSHAL-GIKTIYSFGKSKNAD 257
            +A+A+  ++E L+  G + F+N DD +      +L +A  + L G        +S   D
Sbjct: 213 GVAAAETRLYEYLDGHGGVCFVNADDPWLLSAASKLERAVLYGLNGCGEGVPHAESAALD 272

Query: 258 -FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            F    +  C  Q+   V L   S+       G H   N L      S L   +    + 
Sbjct: 273 PFGRPSFMLCLSQACESVTL---SL------TGRHNVVNALAAAAAGSYLGLSLREIKEG 323

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L    P  G  KR       G   +++++YNANP SM+ AI +L  +     GR+IAVLG
Sbjct: 324 LENMIPATGW-KRLEFQ-EAGGVMIVNDTYNANPDSMRLAIDLLCDLQC--SGRKIAVLG 379

Query: 377 DMCEMGELSQSFH 389
           DM E+G  ++  H
Sbjct: 380 DMLELGSSAELEH 392


>gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
 gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
          Length = 451

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 198/455 (43%), Gaps = 45/455 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87
           + +DSR     E F A++G   DGH FI   + KG  L+V          S   P     
Sbjct: 20  VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79

Query: 88  -----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                 +  L +L  + + +  R + T+ AITGSVGKT+ K      L    K +A  G+
Sbjct: 80  LTPERCEYGLASLASVYLKSLERLRETV-AITGSVGKTSAKNDTKALLEGYFKIHAAAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YN  IG  +T+   P D +  + E+G +H GEI  +T  + P IA +T +APAHL NF  
Sbjct: 139 YNTLIGCAVTVLAAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVTEVAPAHLENFGS 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           +E +  AK EIF   E      +N D+    +L  ++  L +  +  FG+     F    
Sbjct: 199 LEGVLQAKTEIFAS-ENLRCAVINGDNG---MLCKRAEELRLPEVIRFGRRGEVLFAREH 254

Query: 262 -KWKQCSEQSWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             W    E+    V+     L G S  +     G H    +   + I   L         
Sbjct: 255 LSW----EKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGRLGLSSREIAA 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +L       GRG+     L++    ++DE YNA+PA++KA+++ +   S    GRR  +L
Sbjct: 311 SLPKCRNSAGRGE---IRLSESGAAILDECYNASPAAVKASLAAMD--SADIPGRRFLIL 365

Query: 376 GDMCEMGELSQSFHIDLAEVL-----SLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           G+M E+G  S S H  + E        LY     W    +V    D        +Y +++
Sbjct: 366 GEMLELGTASVSEHGKIFERALRVSDLLYLFGEEWK---NVDGTAD--------YYYDSI 414

Query: 431 DGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLL 464
           D L   +  +   +GDV++VK S      R++  L
Sbjct: 415 DALIEAVDGTRPGEGDVILVKGSRGNHLERVVRAL 449


>gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 471

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 177/385 (45%), Gaps = 48/385 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----VF 86
           + DSR +   E F A+ G   DGH +I  A+Q GA +V+     +   G   +P    + 
Sbjct: 27  TADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAAIVLAEEKRLRREGVPVLPEKSSII 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L  L +LA        A +I +TGS GKTTTK+M+   L +  + +   G+ N  
Sbjct: 87  AVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTTKDMVAAVLGTKFRVHKNAGNLNTE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P+T+   P D +  + E+GM  LG+I+ L  +  P  AVIT I   HL      E I
Sbjct: 147 IGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLCEISCPCAAVITNIGATHLELLGSRENI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-----SFGK--------- 252
           A AK EI E L + G   LN +D       A  H    KT++      FG+         
Sbjct: 207 ARAKWEIVESLPEEGIAILNTEDKISMEKAASYHG---KTLFYGIEGKFGRPDLWAEEII 263

Query: 253 ---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                   F+ R  K   E   + + L GK     H+ +    A    +  G+      +
Sbjct: 264 PSGDTGTTFRARYKK---ENVLIRLPLPGK-----HNVLDALAALGAGLLNGV------N 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI--DESYNANPASMKAAISVLSQISPHG 367
           +++  +AL             R  +  G    I  ++ YNANPAS+KA+++VL +    G
Sbjct: 310 LESGSQALEGLQISA-----MRLEILPGCHQSIIINDVYNANPASVKASLAVLKE---RG 361

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL 392
             + +AVLG+M E+G  SQS H ++
Sbjct: 362 GAKTVAVLGEMYELGAASQSGHREV 386


>gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
 gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
          Length = 448

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 191/395 (48%), Gaps = 44/395 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +V    +  + +DSR +   + FFAI     +G+++I   + KGA LVV +     +   
Sbjct: 37  VVETNEIGHVVMDSRKVQKGDLFFAIN----NGNNYIEDVLNKGAALVVAD-----NYKG 87

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V  V++ + ++ KLA   R      IIAITGS GKTTTK+M+   LS    T   +
Sbjct: 88  NDKRVIKVENTVESMQKLAQKYREALDIKIIAITGSNGKTTTKDMMYSVLSQKYVTAKTM 147

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+++ +P I VIT I  +HL   
Sbjct: 148 GNLNNHIGVPFTILQLDSKYEVAVLELGMSGFGEIDLLSNIAKPDIGVITNIGDSHLEFL 207

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E +  AK E+ + + K   I    DD F ++L       GIK     G   N ++Q+
Sbjct: 208 KTRENVFKAKTELIKYITKENLIIFG-DDPFLKILD------GIKV----GYGDNNNYQI 256

Query: 261 RKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + +           +++  EV L GK     H+ +   MA  +   +GI      ++   
Sbjct: 257 KNFMDSDKGLSFELDENKYEVALNGK-----HNCLNAAMAVVIGKKMGIP---YEEIKAG 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L +  P      R++  + +     I+++YNA+P S+  ++    ++  + +  +I 
Sbjct: 309 LKNLEL-TP-----MRFQ-KIEKENIVYINDAYNASPISVSFSLETFDKL--YNDTLKIV 359

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           VLGDM E+GE    +H ++ +     +   ++L G
Sbjct: 360 VLGDMLELGENEIEYHKNILDKALNIHTDKIYLYG 394


>gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
 gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
          Length = 356

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 174/374 (46%), Gaps = 33/374 (8%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+  + ++ L   DS  E      +    
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASNSLLLAPADSIVE-----DYLPTD 230

Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           K +  FG+       D   RK     + +++E   Q   + V     G + A N ++   
Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283

Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +     +    +  A + L +   +      ++ A N     ++ + YNANP +MK  + 
Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337

Query: 359 VLSQISPHGEGRRI 372
             S I  +  GR++
Sbjct: 338 TFSAIPANEGGRKL 351


>gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 143/497 (28%), Positives = 221/497 (44%), Gaps = 86/497 (17%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA------------GLVV 69
           P   V G +  DSR + P   F A+ G   DGHDF   AV+ GA             +VV
Sbjct: 23  PAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAEKAVESGAVAVLAARPVGVPAIVV 82

Query: 70  VNTDMVASIGSLSIPVFGVDD------VLGALNKLAVAARLRSKA----TIIAITGSVGK 119
             T  V   G+ +  ++  D+      V+ AL+ LA A   R  A     I+ +TGS GK
Sbjct: 83  EPTGKVEGDGA-NADIYANDEDGSAAAVIQALSALARAVTQRLAAEDGLNIVGVTGSAGK 141

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++     +  +T A  GS+NN +G+P T  R     ++ + E+    +G IR LT
Sbjct: 142 TSTKDLIATIFRAAGETVAPPGSFNNEVGLPYTALRCDEHTEYLVAEMSARGIGHIRHLT 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLK 236
            +  P + V+  +  AHL  F   E IA AK E+ E L      G   LN +DSF   + 
Sbjct: 202 GITAPKVGVVLNVGTAHLGEFGSRENIALAKGELVEALPSAAEGGVAVLNANDSFVAGMA 261

Query: 237 AKSHALGIKTIYSFGKSKNA----------DFQLRKWKQCS------EQSWMEVQLQGKS 280
            +++A   K +Y    +K            D QL    + S        + + V+LQ   
Sbjct: 262 LRTNA---KVVYYSAVAKQGSTPPAQYYATDVQLDDVARASFLMHTPGHAPLPVKLQ--- 315

Query: 281 MEVVHHGIGYHMAQN------MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                   G H   N        + LG+ + L A+  +  + ++  H  + R +R     
Sbjct: 316 ------VFGAHQVSNALAAAAAAIELGLSAELVANALSGHR-IASEHRMDVRNRR----- 363

Query: 335 NQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                TLID+SYNANP SM+ A  ++    +   + R IAVLG+M E+G+ +   H  L 
Sbjct: 364 --DGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMGELGDDALDAHRQLG 421

Query: 394 EVLSLYNISHVWLSGF--HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL------VDG 444
             L+ Y++ H+   G   +  A+ +A   + I+   S  +D     + S L      VD 
Sbjct: 422 AELAKYHVDHLVAVGSSPNTRAMAEAAQAKGINTSVSVDVDEAAKIVDSLLRTPPVGVDD 481

Query: 445 -------DVVVVKSSNS 454
                  DVV+VK+SN+
Sbjct: 482 WPQRDVKDVVLVKASNA 498


>gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
 gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
          Length = 459

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 204/458 (44%), Gaps = 39/458 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V  +  DSR +   + F  + G  +DGH F+    +      VV+        S  
Sbjct: 22  PDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLDKLTEHKVQAAVVSRSWTEPFPS-G 80

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  + VDD L A  +LA+  R      ++A+TGS GKTTT+E++  AL+ +    A   +
Sbjct: 81  LLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPMGAIQASEAN 140

Query: 143 YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            NN +GVPLT L     D    + E+GM   GEI  L+    P +AVIT I  AH+    
Sbjct: 141 NNNDVGVPLTVLGATAADAAL-VIEMGMRGSGEIERLSRCTEPDLAVITNIGTAHIGCLG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQL 260
             E IA+AK EI  GL   GT+ +   D   E  L A      ++   +      +D   
Sbjct: 200 SREAIAAAKCEITAGLHPKGTVVIPAGDPLLESALAAVWSGRVLRVRLADDPVVESDLIN 259

Query: 261 RKWKQCS------------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             W                +   + +QL+G+           H A+N+L+ + +   L  
Sbjct: 260 ADWIGADLVGDINGDQLLIDADRLPLQLEGR-----------HNARNLLLAVAVADQLGV 308

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                ++ + V  P  GR +R    L QG  TL+DE+YNA+P ++ AA+ +L+       
Sbjct: 309 S-RKQLQGMQVTVPG-GRNRR----LQQGGLTLLDETYNASPEAVLAALELLAAQP---- 358

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHY 426
           GRR AVLG M E+GE S   H ++A       +  + L   G    A+ +      H+  
Sbjct: 359 GRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAAPLPHLQL 418

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +   + + + L  GDV+++K+S      RLI LL
Sbjct: 419 VSNPEDAAVPLAAWLNSGDVLLLKASRGVALERLIPLL 456


>gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein
           [UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase ( MurF);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (MurE) ] [Thiomonas sp. 3As]
          Length = 975

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 204/444 (45%), Gaps = 24/444 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR + P   F A++G  +D HDF+  A   GA  ++        +G+  +P  
Sbjct: 520 VSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQ----GVGACGLPGI 575

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSY 143
              D L AL  LA   R +    +IA+TGS GKTT  +ML   L++ +   +  A  G++
Sbjct: 576 EAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDRRLATQGNF 635

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+PLTL R+       + ELGM+H GEI +L  L  P +A++      H      +
Sbjct: 636 NNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLAEPTVALVNNAQREHQEFMHSV 695

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A     +   L +TG       D+   +  A++    +       +++         
Sbjct: 696 EAVAHENGAVLAALPQTGVAVFPAADAQAAIWVAQAAGRRVLRFALREEAEADVEAEVSG 755

Query: 264 KQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                Q  + VQL   +   EV    +G H A+N L          A +D   + L  F 
Sbjct: 756 HAFYRQGQLHVQLHTPAGHAEVGLQLLGRHNARNALAATAAALAAGAPLDAICRGLEAFA 815

Query: 322 PKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           P  GR   +R RCA ++    LID+SYNANP S++AAI VL+++     GR + +LGDM 
Sbjct: 816 PVAGRLVPRRLRCA-DEHTLLLIDDSYNANPDSVRAAIDVLTELP----GRSLLLLGDMG 870

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLF 436
           E+G+   +FH ++    +   ++ +W  G        A   +      H  + MD  F  
Sbjct: 871 EVGDNGPAFHAEVGTYAAQRGVAALWACGAMTAQAVAAAHAAGLAAAKHQPDLMD--FTL 928

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRL 460
             ++L + D V+VK S    F R+
Sbjct: 929 EAAALREFDTVLVKGSR---FMRM 949



 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 104/280 (37%), Gaps = 42/280 (15%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S DSRS+ P E F A  G   D   F+  A+  GA   +V  + V   G     +  VD 
Sbjct: 27  SADSRSLQPGEVFVAWPGAARDPRQFVTQALAAGAAAALVEAEGVQHFGFTDPRILAVDG 86

Query: 91  VLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN---- 144
           +      LA A          ++A+TG+ GKT+       AL++  +    IG+      
Sbjct: 87  LKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLGAGWP 146

Query: 145 -----------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      + + +   LAR+      +   E     L E R     +  H A  T +
Sbjct: 147 DALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAI--HAAAFTNL 204

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE---LLKAKSHALGIKTI 247
              HL     +   A AK  +F   GL+      L+ DD +     L   +S  L ++T 
Sbjct: 205 TQDHLDYHGDMAAYARAKRALFVWPGLQHA---VLDIDDPYAASVLLADCRSRGLQVQTT 261

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHH 286
               K+         W  C+E     VQ   G+ + +VHH
Sbjct: 262 ALIAKT--------DW--CAEDV---VQTSTGQRLTLVHH 288


>gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 433

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 181/361 (50%), Gaps = 14/361 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   FFA+KG +++G+ F   A+Q GA  V+++    A  G   +    VD
Sbjct: 16  VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDGRYIL----VD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL +L KLA   R      +I +TG+ GKTTTKE+L   LS   KTYA  G+ NNHIGV
Sbjct: 72  NVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +   +   + E+G +HL EI FL  +  P   +I+ +  AHL  F   E +   
Sbjct: 132 PLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGLISNVGKAHLEGFGSFEGVKKT 191

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+   GT+FL  D+     + A      + T Y F ++ +   +L K     +
Sbjct: 192 KGELYDYLQNHNGTLFLQADNPHLNEMAATRKISEVVT-YGFAETNDVIGKLLKADPLLQ 250

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             W E + +  S  V     G +  +N L  + +        +     +  + PK  R +
Sbjct: 251 IEWKE-KDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSAEQINTGIERYTPKNNRSQ 309

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    T+I + YNAN +SM AA+  +  I      R++ +LGDM EMG+ S + 
Sbjct: 310 VTKTEHN----TIIADYYNANASSMAAALDNIEVIDA---SRKVIILGDMFEMGDESDAE 362

Query: 389 H 389
           H
Sbjct: 363 H 363


>gi|330888578|gb|EGH21239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 350

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 146/292 (50%), Gaps = 30/292 (10%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGS GKTT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S 
Sbjct: 1   AMTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASR 60

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI F   L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  
Sbjct: 61  VGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKA 120

Query: 232 FELLKAKSHALGIKTIYSFG-KSKNADFQL----RKWKQC------SEQSWMEVQLQGKS 280
           F + + ++   G + I +F      AD          + C      S     +VQL    
Sbjct: 121 FPVWRKRA---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQL---- 173

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                + +G H   N L        L   ++  +  L+   P +GR    + A N     
Sbjct: 174 -----NLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAV-VQIASNG--TR 225

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +ID++YNANPAS+ AA+++L+  +    GR + VLGD+ E+GE ++  H D+
Sbjct: 226 IIDDTYNANPASINAAVNILTGFT----GRTVLVLGDIGELGEWAEQGHRDV 273


>gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
 gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
          Length = 459

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 216/464 (46%), Gaps = 32/464 (6%)

Query: 2   NPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           NP +T  +L +A +G    G +P   V  +  D+R       F A+ G  +D HD++  A
Sbjct: 3   NPTFTGKELAEATRGSWRDGRLPAEAV-AVYTDTRVAGEGRLFLALPGEKFDAHDYLAQA 61

Query: 61  VQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           V  GAG + +  D    +     +PV  VDD L A  K+A   R R  +  ++A+TGSVG
Sbjct: 62  VAAGAGGLCIRRDRAEKLPEPCPVPVLEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVG 121

Query: 119 KTTTKEMLTIALSSIKKTYACI---GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KT+ KE++   L++     A +   G+ NN IGVP  L R+     + + E+G +H GEI
Sbjct: 122 KTSVKEIVRAILTAASSPEAVLYTEGNTNNQIGVPQNLLRLNSRHRYAVIEMGTNHHGEI 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L+ +  P  +++ +IAP HL     +E +A  K+ IF GL ++G   +  D    E+L
Sbjct: 182 EPLSRMAEPLASLVNSIAPCHLEFLGSLEGVAREKSHIFCGLPESGAAVIPADGPAVEVL 241

Query: 236 KAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMA 293
           +  + +     ++ FG+     D   R      E S  E+  + G+   +     G H A
Sbjct: 242 ETAAESY---RVFRFGEDVSRCDAAARYLGGTLEGSRFELSFRTGERFTLEWALTGRHQA 298

Query: 294 QNMLMTLGIVSILTADVDT-AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           +N      +   +    +T A  A+    P    G R +     G  T ++++YNANP S
Sbjct: 299 RNAAAAAALAVAIGIPPETIAAGAVHARLP----GMRSKVTRLDG-VTYVNDAYNANPGS 353

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+AA++ L++ +     R + VLG+M E+G    + H  L E     N    +  G  +L
Sbjct: 354 MRAALANLAEFA--DPARLVLVLGEMRELGGSEAAEHRALVE-----NALQTF-PGVRLL 405

Query: 413 ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +  A    P ++    SE +      +   + DGD+V  K S 
Sbjct: 406 TVGRAFGECPGALRFDRSEEVGETLAKL---VRDGDLVFAKGSR 446


>gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
 gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
          Length = 429

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 196/404 (48%), Gaps = 31/404 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           +  + +DSR +     FFAIKG    G++ +  A++ GA LV+ +  D++    +    +
Sbjct: 22  IKDVCMDSREVKKGSLFFAIKG----GNNHVEEAIKNGAVLVIYDRKDLLIQDEN---TI 74

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +D +  + KLA   R  ++  ++AITGS GKTTTK+++   LS   +T    G++NN
Sbjct: 75  F-TEDTVNFMQKLARDYRKSNQTKVVAITGSNGKTTTKDIIYSVLSQRFRTKKTQGNHNN 133

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P T+     + +  + E+GMS  GEI  L  +  P   +IT I  +HL      E 
Sbjct: 134 HIGLPYTILNAQPEDEVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKNKEN 193

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK E+ E +    TI    DD + + +       GIK     G      F++ ++  
Sbjct: 194 VFKAKGELLEYVHSKNTIVFG-DDYYLKDIH------GIKV----GYGDENTFKISEF-- 240

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKE 324
                  E +L GK+  +  +G    +  +  + LG+ + +  ++++  ++ + +     
Sbjct: 241 IENDKGAEFKLAGKTYRIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVEL----- 295

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R++  + +G    I+++YNANP SMK AI    ++  +    +I VLGDM E+GE 
Sbjct: 296 -TPMRFQ-KIEKGKKLYINDAYNANPTSMKLAIETFDKLY-NKRACKIIVLGDMLELGEK 352

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           S+ +H ++   L      +++L G  +  L         V+Y E
Sbjct: 353 SEEYHKNIKYYLKKSKAEYIFLYGKEMKNLWSVCQDDKRVYYFE 396


>gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
 gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 209/459 (45%), Gaps = 52/459 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--------IGS 80
           G SIDSR+I   E FFA+ G   DGHD++  A+  GA   VV+   +AS           
Sbjct: 26  GYSIDSRTIGAGELFFAVTGDRVDGHDYVEAALANGAVAAVVSNRWLASDEPREVDPCKL 85

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L +P  G + VL A+  LA+  R      +I +TGS GKTTTKEM+   LSS        
Sbjct: 86  LWVP-EGEECVLRAMQLLALRVRQSWGGRVIGVTGSAGKTTTKEMVATVLSSQFSVLKSA 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NNH GVPL L R+  + +  + E+GM+H GEI+ L  +  P   V++ +A  HL  F
Sbjct: 145 GNLNNHFGVPLQLLRLEAEHEVAVIEMGMNHSGEIKRLAEIAEPQWGVVSNVAAVHLEFF 204

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADF 258
            +GI  IA+AK E+ E L   G   LN DD +      +   +G+ ++ Y  G       
Sbjct: 205 PAGIAGIAAAKRELIEALPSDGLAILNGDDEWV-----RGFGVGVDSVLYGLGDE----- 254

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTA 308
                 Q    + +E  L G S   VH G          +G H   N L  + +      
Sbjct: 255 -----AQVRATNVVEAGLDGVSF-TVHAGGDTAEVHLALLGKHNVSNALAAIAVGWKSGM 308

Query: 309 DVDTAIKALSVFHPKEGRGK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            +     AL+     + RG    +R A       L+++SYN+NP ++ A +  L      
Sbjct: 309 TLTACAAALAEMRATDKRGAVIEWRGA------KLLNDSYNSNPKALDAMVDALISTPAT 362

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVH 425
              RRI V G+M E+G    + H      ++   +   V + G     +  A  +++ V 
Sbjct: 363 ---RRIVVAGEMLELGPEGPALHKACGRRMAEQGVDLIVGVRGLAADLVSGAGEKAVFV- 418

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ET +    ++ +++  GDVV++K+S      R +  L
Sbjct: 419 --ETPEAAGNWLTANVKAGDVVLLKASRGVRLERALEKL 455


>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 477

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 173/371 (46%), Gaps = 19/371 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           V G ++DSR + P   FFA+ G   DGH F+  A+  GA   V+   +   +   + P  
Sbjct: 25  VEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLAEVLPDGAPPGT 84

Query: 85  -VFGVDDVLGALNKLAV-AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V  V D   AL  LA    R R+   ++ ITGS+GKTTTKEM    L+         G+
Sbjct: 85  AVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLARRFAVLKSAGN 144

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YN  +G+PLTL  +       + E+ M  LGEI  L  +  P + V+T +A +HL     
Sbjct: 145 YNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEPDVGVVTVVAESHLEFLGS 204

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261
           +E +A AK E+ E L + G   LN  D     + A++ A  +    +FG   + AD +  
Sbjct: 205 LERVAQAKGELVEALPEDGVAILNAGDPRVRAMAARTRARVL----TFGHDGEGADVRAV 260

Query: 262 KWK-QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             + + +  S   +++ G     V   + G       L    +   L  D  T    L+ 
Sbjct: 261 NVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVGVALGLDAATIAAGLA- 319

Query: 320 FHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
               E R    R  + Q G +TL  + YNA+P S +AA+  L Q++  G  R +A+LGDM
Sbjct: 320 ----EARPAALRNEIRQAGPWTLYIDCYNASPTSTRAALHALRQVA--GSRRAVAILGDM 373

Query: 379 CEMGELSQSFH 389
            E+G+ +   H
Sbjct: 374 FELGDWAVEGH 384


>gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
 gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
          Length = 490

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 204/477 (42%), Gaps = 58/477 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R + P   F A+ G   DGHDF   AV  GA  V+   ++ A    ++ PV   
Sbjct: 29  GVEFDTRKLLPGGLFLALPGERVDGHDFAAAAVAAGAAGVLAGREVPAP-SVIAPPVAPA 87

Query: 89  DD-----------------VLGALNKLA--VAARLRSKA-TIIAITGSVGKTTTKEMLTI 128
           D+                 VL AL KLA  V  RL +   T++ +TGS GKT+TK+++  
Sbjct: 88  DEHEGAYVLSGDSDGSGAAVLAALGKLARHVTDRLTAGGLTVVGVTGSSGKTSTKDLIAQ 147

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS    T A  GS+NN +G P T  R   D  + + EL     G I  L  +  P I  
Sbjct: 148 VLSPTGATIAPPGSFNNELGHPWTALRADEDTGYLVLELSARGPGHIADLCAVAPPRIGA 207

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGI 244
           +  +  AHL  F   E +A  K E+ E L + G   LN DD       E  KAK   +G 
Sbjct: 208 VLNVGTAHLGEFGSREGVARTKGELVEALPEDGVAVLNADDPLVLAMAERTKAKVVLVG- 266

Query: 245 KTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +S  + +  D  L +  +      +      VQL       VH   G H   N L  
Sbjct: 267 --EHSRAQVRAVDIVLDEQARPGFTLLTPHGSARVQL------AVH---GPHQVGNALTA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L A        L    P      R          T+++++YNANP S+KAA+  
Sbjct: 316 AAVALELGATPQQVADRLGSAKPISAH--RMEVVDRADGVTVVNDAYNANPESVKAALKS 373

Query: 360 LSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           L+ IS       R  AVLG M E+G  S   H ++  +    +++ + + G    A+   
Sbjct: 374 LATISRSTTPARRSWAVLGPMAELGADSVRAHDEIGRLAVRLDVNRLVVIGDDARAMH-- 431

Query: 418 LPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  H+  S   + + +         ++  +  GDVV+VK+SNS G +R+   LLE
Sbjct: 432 --QGAHLEGSWGEESILVPDVAAAIELLRDEVRPGDVVLVKASNSYGLWRVAEALLE 486


>gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
 gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
          Length = 438

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 207/444 (46%), Gaps = 30/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +SR+      F A+KG  +DG+ F   A+ KG    +++    A   +  + +  VD
Sbjct: 16  ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRLIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA   R R    +I ITG+ GKTTTKE+++  L+         G++NN +GV
Sbjct: 74  DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L     P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ L+     +FLN  ++    +  +     +  I ++G+S +A+ +  +   C+ 
Sbjct: 194 KGELYDYLKAHDCLLFLNESNADLVDMACQRE---MNRIITYGQSDDANVR-GEVIDCAP 249

Query: 268 --EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               SW ++   + + ++ EV  H IG +   NML  + I        +    AL  + P
Sbjct: 250 FLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVTPEQINHALESYVP 309

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +    A N+    LI ++YNANP+SM AAI     ++      ++A+LGDM E+G
Sbjct: 310 ANNRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMRELG 362

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSS 440
           E+S+  H  L + L       VWL G              H ++ +   +D +   I + 
Sbjct: 363 EVSELEHQKLVDKLQADGFQEVWLVGEEF--------GKTHTNFRKFRNVDEVKAEIAAH 414

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
             +   +++K SN    Y L  LL
Sbjct: 415 CPENCYILIKGSNGIKLYELPELL 438


>gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
 gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
          Length = 464

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 199/416 (47%), Gaps = 45/416 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N ISI+S+ +   + F AI+G    G++F+  A++KGA   V ++  +      +   F
Sbjct: 21  INNISINSKELGKNDIFVAIRG----GNNFVNEALEKGA-FAVYDSKTLKIDEKYANRAF 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D +  L   A   R      +I ITGS GKTT K+M+   LS   K     G+YNNH
Sbjct: 76  FVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEGNYNNH 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL R   D  F I E+GMS  GEI  L  +  P I VIT I  +HL      E +
Sbjct: 136 IGLPFTLLRAEEDDKFIILEMGMSGFGEIDLLGQIALPDINVITNIGESHLEFLKTKENV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS----HALGI--------KTIYSFG--- 251
             AK EI   ++   T+ +N DD + + +KA++     AL +         + + +G   
Sbjct: 196 FLAKTEIIPYIK--NTLVINGDDDYLKNVKAENIEVVKALNLGSNEFREKTSDFYYGDVH 253

Query: 252 -KSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                 DF L+ + K C  QS +E   +   +       G H   N++M + +      +
Sbjct: 254 FNESGTDFFLKYFGKIC--QSTVERNYKTNVL-------GEHNVLNLVMAIAVAKQFGME 304

Query: 310 ---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A+K + +       G R++   N G  T I+++YNA+P SM+ ++   SQI  +
Sbjct: 305 DKIISEAVKNIGL------TGMRFQIIEN-GDTTYINDAYNASPMSMEKSLETFSQI--Y 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +  +I VLGDM E+GE     H +L   +       ++L G  + +L + +  ++
Sbjct: 356 NDRLKIMVLGDMLELGENELELHSNLFNTIKNTKFDKLYLFGERMKSLFEKIKENV 411


>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 194/457 (42%), Gaps = 59/457 (12%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+W+   +L A  G   G   +     +S DSR+I   + F A++G  +DGH F+   V
Sbjct: 31  NPVWSLDQVLLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVV 90

Query: 62  QKGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGK 119
           +KGA GLV+ +         + +      D L AL  LA   R++ K   ++AITGS GK
Sbjct: 91  RKGAAGLVLESPPEEPLPVPVVLVA----DTLQALGDLAHYRRMQMKGLKVLAITGSSGK 146

Query: 120 TTTKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           TT KEM    +   +   +     G+ NN IG+PL+L  +     + + E+GM+  GEI 
Sbjct: 147 TTVKEMTAAIMEQGRGRQRVLKTRGNLNNLIGLPLSLLAVDAHHQYAVLEMGMNRFGEIA 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            +  + +P IA IT +  AHL+  + +  +A AK E+F G+    T+ +N DD     L 
Sbjct: 207 RMAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNRDDPRVWRLA 266

Query: 237 AK-----------------------------SHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K                             S  L I  +  +G    +  ++ +     
Sbjct: 267 GKLPQRRITFGRKPGTTVRATRLRSRGEEGMSFTLTIADVTDYGGHGVSGHRVPQVVASG 326

Query: 268 EQSWMEVQLQGKSME---------------VVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
                 V+  G+S +                VH   +G H  QN L    +         
Sbjct: 327 PAPRTSVRKPGRSPQDAVPCDRLLADGWQGRVHIAALGEHNVQNALAAAALALAAGVSPA 386

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L  + P     KR R         LID+SYNANP+SM AA+  +  +  +   + 
Sbjct: 387 EIVAGLEGYRPF---AKRLRIQPFVAGLKLIDDSYNANPSSMLAALETVHNLRRN--RKV 441

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +A+LGDM E+G    + H  + E ++     ++   G
Sbjct: 442 VAILGDMLELGSHGPAAHRFIGEQVARLGFDYLLTVG 478


>gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 430

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 213/428 (49%), Gaps = 26/428 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +SR       FFA++G  +DG+D+I+ A+  GA   V + + +      +  +  V 
Sbjct: 16  ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDRNDLPE----NERIIKVG 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L  LA   R    A IIAITG+ GKTTTKE++   LSS  KT     + NN+IGV
Sbjct: 72  NVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLSSKYKTLYTQENLNNYIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +  F + E+G SH+ EIR L  +  P   +IT +  AHL  F  ++ +  A
Sbjct: 132 PLTLLRLNSEHQFAVIEMGASHVNEIRMLCQIAEPDYGIITNVGKAHLEGFGSLDGVVKA 191

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ + +K G +F N D+    +LK   ++  +  IY +G +  A F   +      
Sbjct: 192 KTELYDFIRDKGGVVFANLDNL---ILKEWYNSFSV--IY-YGTTSKA-FVYGRMIGFDP 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +E        ++V H +G +  +N+L ++ + +    +       ++ + P   R +
Sbjct: 245 TLVLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRINVVIANYIPINNRSQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELSQ 386
             +   N     LI ++YNANP SM+ A+    +  ISP     ++ +LG+M E+G  S+
Sbjct: 305 NCKTKKN----NLIVDAYNANPDSMRVALDNFYKLRISP-----KMVILGEMGELGSYSK 355

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +   L    +  V+L G +       LP S    + +T D L  +++ + V+G  
Sbjct: 356 EEHQKVLNSLWGSKVDKVFLIGRNFEEC--LLPCSGWKLFRQTEDCL-EYLRMTSVEGYH 412

Query: 447 VVVKSSNS 454
           +++K S +
Sbjct: 413 ILIKGSRN 420


>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
 gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
          Length = 456

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 205/445 (46%), Gaps = 19/445 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G++IDSR+++  + F A++G   DGHD++  A   GA   VV   +     ++ IP  
Sbjct: 27  VSGVAIDSRTVSAGDLFVALRGERVDGHDYVAAAHAGGAVAAVVEEPV-----AVEIPQL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   +  L+ +A   R + +  ++ ITGS GKT+ K +L   L+    T A  G+ NN 
Sbjct: 82  QVAASVDVLSLIAGMVREQYRGVLVGITGSAGKTSAKTLLASVLAEAGPTLATSGNQNNE 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+   ++F + E+G    G+I  L  + RP I  +   APAHL+N+  ++ I
Sbjct: 142 IGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCAVARPGITALLNAAPAHLANYDSVDAI 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQ 265
           A  K EI   L        N D  + ++ +  +    ++T   FG SK  D + +    +
Sbjct: 202 ARTKGEILAALGSGDLGVFNGDQRYADVWREMAAPAEVRT---FGMSKGVDVRAINIQYE 258

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +   V+      +V     G     N L  + I   L        + L    P+ G
Sbjct: 259 GYKGTHFRVKTPEDGFDVALKLPGSPGVYNALAAIAIAGALGLSPAAIARGLEKVSPERG 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           RG+  R +       ++D+SYNANP ++ AAI  L+ ++P   GRR  +LG M E+G  +
Sbjct: 319 RGRALRASSGA---QIVDDSYNANPVAVAAAIDTLA-MTP---GRRSLILGPMLELGPKT 371

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             FH ++        +  +   G       +    S   H+++  +   L        GD
Sbjct: 372 DEFHREMGVRAKEAGLDRLITVGEATRPAAEGFGGSPQ-HFAD--NSALLSALPDFTSGD 428

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPA 470
            V+VK S       +++ LL E  A
Sbjct: 429 TVLVKGSRGARLEVVVDALLGELEA 453


>gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 474

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 183/379 (48%), Gaps = 50/379 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVD 89
           DSR I P + F A KG + DGH FI  A + GA   + +T   D+      + +P     
Sbjct: 35  DSRLITPGDLFIARKGTNSDGHHFIPAAARAGALAALCSTPANDVPPDFLQIIVP----- 89

Query: 90  DVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DVL AL+  A A   R K T+ I ITGS GKT+TK+ +   LS    T     SYN+ +G
Sbjct: 90  DVLTALHATARARTQRQKDTVRIGITGSNGKTSTKDAVAAVLSHKAPTLKTYASYNHELG 149

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIA 207
            P+TL  +     + + E+G   +GE+ +L + +  PH ++ITT+  AHL  F   E +A
Sbjct: 150 YPITLLHLEPQHRYAVLEMGAQCVGELTWLCNSIASPHWSIITTVGAAHLEYFGTQERVA 209

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----------- 256
            AK+E+ + L   G   LNYDD     + AK+ A     I  +G  + A           
Sbjct: 210 IAKSELVQVLTPDGFAILNYDDELVRAMAAKTQA----RILYYGTGEGATVRASNIGGDT 265

Query: 257 ----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                F L    Q   Q  ++++L G+      HG+   +A         +S+   D+ +
Sbjct: 266 LFGHSFTLHYHDQ---QQPVQLRLPGE------HGVTIALAAAATGCAAEMSL--DDIAS 314

Query: 313 AIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           A++ LS   P  G     RC +  G    TLID+SYNAN  S+ A  S +   S    G+
Sbjct: 315 ALEDLS---PAPG-----RCEIKPGPNNSTLIDDSYNANRQSIIAITSAMHNTSQAPNGK 366

Query: 371 RIAVLGDMCEMGELSQSFH 389
           R A+LGD+ ++G  +++ H
Sbjct: 367 RWAILGDIFQLGTYARAEH 385


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 201/452 (44%), Gaps = 34/452 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--------NTDMVASIG 79
           +G S DSR  A  E F A++ P  DGH +I  A+  GA  V+         NT M+ +  
Sbjct: 24  SGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAAGATGVICEKPPADLSNTTMIVT-- 81

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                    DD      + A A   +    +I +TGSVGKT+    +   LS +  T+  
Sbjct: 82  ---------DDPALLAARWAAARLRQVAPRVIGVTGSVGKTSATRAIAAVLSGLAPTFRS 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             S+N+ IG+P++LAR+  D  F + E G ++ GE+  LT L  PH+AV+T+ AP  LS 
Sbjct: 133 RRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELHRLTALFPPHVAVVTSAAPMRLSA 192

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F  + ++      +   L   G   +N DD     L   + A     + +FG   + D +
Sbjct: 193 FGSVADLVREYGALVAALPVDGWAVVNGDDPALAGLCDTTRA----RVLTFGTGASCDLR 248

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
               +     + M V  +G+S++ V   IG       L  +G+  +    ++ A + L++
Sbjct: 249 GEAPQYALNGTRMRVCYRGESVDTVIPLIGEPAVGAALAAVGVALVCGMTLERAAERLAL 308

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  G   R R  L +    +ID++  A P++M AA+  L+ +      RRIAVLGD+ 
Sbjct: 309 VEPPAG---RLRPHLARSSAIVIDDTVGAEPSAMLAALRTLAILPAQ---RRIAVLGDLP 362

Query: 380 EMGELSQSFHIDLAEVLSLYNISH---VWL--SGFHVLALKDALPRSIHVHYSETMDGLF 434
               +    +   A +  L   +    +W   +G HV+     +   +      T+ G  
Sbjct: 363 ADSSIPGEQNDTYAAIGRLAARTADLLIWKGDAGTHVMRAVQRVRTGMSATLVHTIAGAL 422

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +   L  GD+V+V    +    RL+  L++
Sbjct: 423 EALPPDLGAGDLVLVCGGATARLERLVAALID 454


>gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
          Length = 468

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 169/366 (46%), Gaps = 27/366 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  D+R++     + A++G  +D H F   AV +GA  V+V+      +  L +P  
Sbjct: 24  VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141
            V D   AL  +A A +    + ++A+TGS GKT+ K ML       A  S    YA  G
Sbjct: 80  VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IG+PL +   P + DF ++E+G    G+I +LT +V P +A++  IAPAHL    
Sbjct: 140 NRNNEIGLPLAVIAAPDNADFAVYEMGAGKSGDIGYLTDIVTPDVALVNNIAPAHLERMG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADF 258
            +  +A  K EI+  L   GT  +N DD+F   FE     +       +  FG    AD 
Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPASC----AVLRFGLQATADV 255

Query: 259 QLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 Q SE S  ++ V  QG+ + V     G H   N L    +  +    +      
Sbjct: 256 TAYSL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAG 313

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L +     GR   +      G   LID+SYNANP S+  AI  L+  S    G    VLG
Sbjct: 314 LGLARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTTAS----GPGWLVLG 366

Query: 377 DMCEMG 382
           DM E+G
Sbjct: 367 DMLELG 372


>gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 428

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 223/466 (47%), Gaps = 43/466 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L  AI+GH I           + DSR I   + F A+KG ++DG+ +   A+++
Sbjct: 1   MTTIEKLYPAIRGHRI-----------TTDSRQIIRGDIFIALKGENFDGNRYAAAALEQ 49

Query: 64  GAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L ++ N D ++    L      V D L  L +LA   R +    I+ ITG+ GKTTT
Sbjct: 50  GAALAIIDNADYLSPGCEL------VADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTT 103

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+    LS   KT+A  G++NNHIGVPLTL  M    +FGI E+G +H GEI+ L  + 
Sbjct: 104 KELCHAVLSKKFKTFATQGNFNNHIGVPLTLLSMDETTEFGIVEMGANHPGEIKTLCEIA 163

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241
            P   +IT I  AHL  F   E I + K  +++  L K G +F+N  D     L ++ H 
Sbjct: 164 DPDFGIITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQL-SRDHK 222

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 Y++G+    D    + KQ        ++ +   + V  H +G +   N +    
Sbjct: 223 R-----YTYGQE--GDLLKGEIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASA 275

Query: 302 I---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           I     I   D+ TAI+    + P   R +  R   N    T+I ++YNANP+SM+A++ 
Sbjct: 276 IGMHFGIDPLDIQTAIEN---YRPSNLRSQLIRSGRN----TIILDAYNANPSSMRASVG 328

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              ++   GE  ++ +LG+M E+G  + + H ++  +    N   ++L G +     D  
Sbjct: 329 NFCEMP--GE-HKVVILGEMLELGTENAAAHEEIVRLTQQGNFDRIFLIGNNFEHCAD-- 383

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +   + + +  +    +++S  ++   + +K S      R++  L
Sbjct: 384 -KCNFITWFKDTESFMEYLKSHPLNDSFIFIKGSRGNKLERIVEYL 428


>gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 423

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 208/437 (47%), Gaps = 31/437 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++IDSR IA  + FFA  G +++       A+  GA  V+V    +    +    +F V 
Sbjct: 16  VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE---LPEFENRDKNIFYVP 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             L  L +LA+  R +     I +TGS GKTTTKE++   LS         G+ NNHIGV
Sbjct: 73  STLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  +  + +  + E+G +H  EI FL  + +P    IT    AHL  F G E +   
Sbjct: 133 PLTILSIKPEHEMAVIEMGANHQKEIEFLCTISQPDFGYITNFGKAHLEGFGGFEGVIKG 192

Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCS 267
           K+E+++ L+    TI +N +D   +L K +++   I    +FGK + N +F+       S
Sbjct: 193 KSELYDYLKNNNRTIVVNENDP-IQLEKTENYPSKI----TFGKETSNYNFE-----SFS 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E+ ++ +  QG  ++ V    G +   N+     +        +    AL ++ P   R 
Sbjct: 243 EEHFVGLIYQG--VKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKIKHALELYTPTNMRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     + +   TL+ ++YNANP+SM A+++         EG +  ++GDM E+G+ S+ 
Sbjct: 301 Q----VVKKEGRTLVLDTYNANPSSMTASLNNFISF----EGSKTIIIGDMLELGDESEK 352

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H ++ ++    +   +   G H  A+      S  + +  T + L  +++   +  + +
Sbjct: 353 EHQNILKLAQDLHFDEIITVGKHFKAV-----NSSDLAFENTTE-LAEYLKQHKIQTENI 406

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      ++I+ +
Sbjct: 407 LLKGSRGIALEKIIDFI 423


>gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 468

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 203/472 (43%), Gaps = 40/472 (8%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF+     +    
Sbjct: 7   GEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVAAR---- 62

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                 +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT KEM+ 
Sbjct: 63  GAAAALVAHAPADVAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  D Q+       E   + +     ++ V    +G H A+N L       
Sbjct: 243 LDFALHDAERQNDAQIVGRMHGGE---LAIDTPAGAVTVRLRALGEHNARNALAATAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
                +    + L  F P +GR +  + ++      T++D++YNANP SM+AAI VL + 
Sbjct: 300 GAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAH 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +P     R+ V+GDM E+G+   +FH ++        I  ++       AL DA  R  
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALF-------ALGDA-SRDA 406

Query: 423 HVHYSET---MDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
              Y +T    D +   + + L  G      V+VK S      R+++ L  +
Sbjct: 407 CTAYGDTARHFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
 gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 448

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 44/395 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +V +  +  + +DSR +   + FFAI     +G+ +I   ++KGA LV+ +     +   
Sbjct: 37  VVEKNEIGHVVMDSRKVQKGDLFFAIN----NGNSYIDDVLEKGAALVIAD-----NYKG 87

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V  V+D +  + +LA   R      +IAITGS GKTTTK+M+   LS    T   +
Sbjct: 88  NDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAKTM 147

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+ +V P I VIT I  +HL   
Sbjct: 148 GNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPDIGVITNIGDSHLEFL 207

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E +  AK E+ + +     I    DD F + L       GIK     G   N ++Q+
Sbjct: 208 KTRENVFKAKTELVKYVSAENLIVFG-DDPFLKDLN------GIKV----GYENNNNYQI 256

Query: 261 RKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + +           E+    V L GK     H+ I   MA  +   +G+      ++   
Sbjct: 257 KNFTDSDEGLSFEMEEKKYTVSLNGK-----HNCINTAMAIVIGKKMGVS---YEEISNG 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L +  P      R++  + +     I+++YNA+P S+  ++    ++  + +  +I 
Sbjct: 309 LKNLEL-TP-----MRFQ-KIEKENIIYINDAYNASPISVSFSLETFDKL--YNDALKIT 359

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           VLGDM E+GE    +H ++ E   + +   ++L G
Sbjct: 360 VLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYG 394


>gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 428

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 44/395 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +V +  +  + +DSR +   + FFAI     +G+ +I   ++KGA LV+ +     +   
Sbjct: 17  VVEKNEIGHVVMDSRKVQKGDLFFAIN----NGNSYIDDVLEKGAALVIAD-----NYKG 67

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V  V+D +  + +LA   R      +IAITGS GKTTTK+M+   LS    T   +
Sbjct: 68  NDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAKTM 127

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+ +V P I VIT I  +HL   
Sbjct: 128 GNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPDIGVITNIGDSHLEFL 187

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E +  AK E+ + +     I    DD F + L       GIK     G   N ++Q+
Sbjct: 188 KTRENVFKAKTELVKYVSAENLIVFG-DDPFLKDLN------GIKV----GYENNNNYQI 236

Query: 261 RKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + +           E+    V L GK     H+ I   MA  +   +G+      ++   
Sbjct: 237 KNFTDSDEGLSFEMEEKKYTVSLNGK-----HNCINTAMAIVIGKKMGVS---YEEISNG 288

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L +  P      R++  + +     I+++YNA+P S+  ++    ++  + +  +I 
Sbjct: 289 LKNLEL-TP-----MRFQ-KIEKENIIYINDAYNASPISVSFSLETFDKL--YNDALKIT 339

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           VLGDM E+GE    +H ++ E   + +   ++L G
Sbjct: 340 VLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYG 374


>gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
 gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
          Length = 429

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 208/461 (45%), Gaps = 39/461 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +++  ++  SI +     + G SIDSR+I   E F  IKG  +DG DF   AV+K 
Sbjct: 3   FGLDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKS 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               +V          +  P   V++ LGAL +LA     +S A  +AI GSVGKTTTKE
Sbjct: 63  KTFAIVEK-------KVDCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTTKE 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS        + + NN IGV  TL R+  D DF + E+G+++ GE+  +     P
Sbjct: 116 LVADFLSCRYSVCRSLENENNIIGVCKTLLRVE-DEDFCVVEVGINNPGEMEEIAAFFEP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243
              +   +   H+ NF  I+ I   K++I   + K+  +  N DD    E  + K ++ G
Sbjct: 175 DNVLFLNVTSTHIGNFENIDAIFKEKSKI---INKSSRLVYNADDEILKEAFEGKENSFG 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                 FG     D + R       ++   V+++  +++       Y +    +      
Sbjct: 232 ---FCFFG-----DCEFRA------ENNNNVKVEDITLKKPFGLNPYTVLSGFVAAFVFG 277

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       L  F P    G R R  + +    ++D  YNAN  SM  AI  L+++
Sbjct: 278 GF--KDETCFNDKLKAFKP---VGYRMRPEILEDKLFILD-CYNANVNSMMHAIDELAKL 331

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +GR++A+LGDM E+G  S+ FH D+   L+  +I  + + G     + DA   +  
Sbjct: 332 ----KGRKLAILGDMLELGSFSERFHRDVGLYLNGKDIDLLAVGG-DAFFIFDAF--NGK 384

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +Y +T       ++  L D D+ ++K+S    F  +   L
Sbjct: 385 KYYCKTKPEAVELLKDKLTDYDIFLLKASRGMRFEDIFTRL 425


>gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
 gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
          Length = 447

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 182/395 (46%), Gaps = 43/395 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G SIDSR++ P + +  I     DGH +I  A+  GA   +   + V       
Sbjct: 19  PDVGVEGASIDSRTLRPGQLYVPIVA-ERDGHAYIPAALDAGAPAYLTEQEPVGGT---- 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                V D   A+ +L V AR R    I  +TGSVGKTTTK++L   L++  +T A   S
Sbjct: 74  --AIRVGDTAAAMLRLGVLARGRVGGAI-GVTGSVGKTTTKDLLAGCLAARFRTAASERS 130

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN +G+PLTL   P    + + E+G    G+I  L  + RP + ++T++  AHL     
Sbjct: 131 FNNELGLPLTLFNAPEAARWAVLEMGARRAGDIERLAAVARPEVGIVTSVDMAHLEYMGD 190

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNA---- 256
           ++ +A  K E+   L  +G   LN+DD     + +   S  LG    YS G   +     
Sbjct: 191 LDGVARVKGELVAALPASGLAVLNFDDPRVRGMASLSASPVLG----YSVGGDADVRADD 246

Query: 257 ---DFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              D  LR +++  S     EV+L       VH   G H   N L    +       ++T
Sbjct: 247 VTLDQDLRARFRLSSPWGQAEVRLG------VH---GLHQVPNALAAATVALWCGVPIET 297

Query: 313 AIKALSVFHPKEGRGKRYRCA---LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              AL+     + +G  +R     +  G   ++D  YNA P S +A +  L+ +   GE 
Sbjct: 298 VAAALA-----QSKGSPWRMEVHHMPDGPLLVVD-CYNAMPTSTEAGLRSLAALP--GE- 348

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           R++A+LG M E+G+ S+S H  +A V     I  V
Sbjct: 349 RKLALLGLMAELGDHSESEHRRIARVAEELGIEAV 383


>gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum GMI1000]
 gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum GMI1000]
          Length = 482

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 206/461 (44%), Gaps = 23/461 (4%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           H +G  P   +  ++ DSR++ P + F A+ G  +D HDF+   V +GA  V+V+   V 
Sbjct: 22  HLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPPVG 79

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--- 133
                 + V  V D   AL +LA   R R    ++A+TGS GKTT KEM++   +     
Sbjct: 80  IPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMISAVFACAVGE 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               A  G+ NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I    
Sbjct: 140 AARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQPTVALINNAQ 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYS 249
             H      +E +A+  A +   L   G      D +    +  L +A   A G + +  
Sbjct: 200 REHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLD 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG    A          ++   ++V   G         +G H A+N L            
Sbjct: 257 FGIEGGAVSA--AVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAATACALAAGIA 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   +ALS F P +GR +R +   + G   +ID++YNANP S++AAI  L+ +      
Sbjct: 315 PEVIAQALSAFAPVKGRLQR-KPGHHGGL--VIDDTYNANPDSVRAAIDALATLP----A 367

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            R  VLGDM E+G    +FH ++        I  V  +G     + +A       H++ +
Sbjct: 368 PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELARHMVEAFGGGAR-HFA-S 425

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 426 AEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
 gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
          Length = 438

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 187/387 (48%), Gaps = 22/387 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG  +DG+ F   A+ KG    +++    A   +  + +  VD
Sbjct: 16  ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRLIL--VD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA   R R    +I ITG+ GKTTTKE+++  L+         G++NN +GV
Sbjct: 74  DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L     P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193

Query: 210 KAEIFEGLEKTGT-IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L+     +FLN  ++   ++ + +     +  I ++G+S +A+ +  +   C+
Sbjct: 194 KGELYDYLKAHDCLLFLNESNADLVDMARQRE----MNRIITYGQSDDANVR-GEVIDCA 248

Query: 268 ---EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                SW ++   + + ++ EV  H IG +   NM   + I        +    AL  + 
Sbjct: 249 PFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVTPEQINHALESYV 308

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +    A N+    LI ++YNANP+SM AAI     ++      ++A+LGDM E+
Sbjct: 309 PANNRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMREL 361

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408
           GE+S   H  L + L       VWL G
Sbjct: 362 GEVSDLEHQKLVDKLQADGFQEVWLVG 388


>gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
 gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
          Length = 475

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 154/490 (31%), Positives = 219/490 (44%), Gaps = 63/490 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q + G   G         +  DSR       + A +G   DGHDF+  A+  GA
Sbjct: 5   TTRQLAQVVGGTLAGDGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEAALGNGA 64

Query: 66  GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
                    VAS+    +P     V DV  A  +LA  +   L     ++A+TGS GKT+
Sbjct: 65  ---------VASLAEREVPGTYVLVPDVQEAFARLARWMVDEL-PDLQVVAVTGSSGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++L   L+    T A I SYN+ +GVPLT+ R+    ++ + E+G S  G I +LT +
Sbjct: 115 TKDLLGQVLAEAGPTIAPIESYNSEVGVPLTVCRIEPTTEYLVAEMGASGPGHIAYLTAI 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P + ++  +  AHL  F   + IA  KA I EGL   G   LN DD    L+ A S  
Sbjct: 175 APPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEGLPADGLAVLNADDP---LVAAMSER 231

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---------------VQLQGKSME-VVH 285
           +    +  F  S +AD   R  +  S  +W E               V+ QG +    VH
Sbjct: 232 VTSGEVQYF--SLDAD---RAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPVH 286

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLI 342
             + G HMA N L  L  V  +  D   A+ ALS          R+R  + +      +I
Sbjct: 287 LRVRGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAI----SRWRMEVTERPDGVMVI 342

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSL 398
           ++ YNANP SM+AA++ L  ++ HG  R  AVL  M E+G  S + H ++    AEV   
Sbjct: 343 NDGYNANPESMRAALTALRDMA-HGR-RTWAVLAGMLELGPDSAARHREVGRHAAEVGVD 400

Query: 399 YNISHVWLS-----GFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             +     +     G H     A +D  P  I VH SE    +   ++  LVD DVV+ K
Sbjct: 401 VVLVVGDTAAPIGEGVHDVSTAAGQDG-PVVISVHDSEEARSV---LEDQLVDQDVVLFK 456

Query: 451 SSNSCGFYRL 460
           SS   G   L
Sbjct: 457 SSRDSGMRVL 466


>gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 452

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 197/439 (44%), Gaps = 24/439 (5%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGVDD 90
           IDSR       F A KG   DG+ +    +Q GA +V+V + D+   I    + V    D
Sbjct: 29  IDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGACMVIVTDEDVYEQIEGNKVLV---AD 85

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL  L      R K   IA+TGSVGKTTTKE+++  L + K+ Y   G++NN +GV 
Sbjct: 86  ALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKELISEVLRTRKRVYTAYGNFNNELGVA 145

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           +  A M +   + +FE+G +  GEI  L+  ++P I V+T I  AH+  F GIE +A  K
Sbjct: 146 ICAANMKMGTSYSVFEMGTNSAGEIEALSKYIKPDICVVTGIGHAHIGRFEGIEGLAKEK 205

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             I  G++K G +++   DS    +   S  L    +  FG    +   L    +  +  
Sbjct: 206 LSIVSGMQKRGVLYIA--DSCRRFV--TSEVLEKTDVRYFGTDMASHIILGDVNRTVDGD 261

Query: 271 WMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +    +   +         Y H   N L  + I           +K +  F PK+GRG  
Sbjct: 262 FYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMAAGLSYTDVMKGIRKFQPKDGRG-- 319

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R     G   +ID++YNA   S+ +A++ L+ I      ++ A +G+M E+    +  +
Sbjct: 320 -RIKEVDG-IKVIDDTYNAGFESVISAMTNLAGIPVE---KKTAFIGEMGEIEGYEEMLY 374

Query: 390 IDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             L +  S L N+  V++             R+ ++   +T +     I  S V    V+
Sbjct: 375 FKLMKKASELTNVEFVFVGKNFA-----RFERTGNIKVVQTREEAMQLI--SKVSCGTVL 427

Query: 449 VKSSNSCGFYRLINLLLEE 467
            K+S    F  LI  L EE
Sbjct: 428 FKASRGQKFEELIRHLEEE 446


>gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 511

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 181/420 (43%), Gaps = 40/420 (9%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA------------GLVV 69
           P   V G +  DSR +     F A+ G   DGHD+   A+ KGA             +VV
Sbjct: 23  PDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYATTAIDKGAVAVLAARPVGVPAIVV 82

Query: 70  VNTDMVASIGSLSIPVFGVDD--------VLGALNKLAVAARLRSKA--TIIAITGSVGK 119
                V   G+ +  ++  D+           +    AV  RL ++   TI+ +TGS GK
Sbjct: 83  EPHGRVEGDGA-NADIYANDEDGSAAAVVAALSAIARAVTQRLAAEQNLTIVGVTGSAGK 141

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++      + +T A  GS+NN IG+P T  R      + + E+    +G IR LT
Sbjct: 142 TSTKDLIATIFREVGETVAPPGSFNNEIGLPYTALRCDEHTRYLVAEMSARGIGHIRHLT 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLK 236
            +  P + V+  +  AHL  F   E IA AK E+ E L   E  G   LN DD F   + 
Sbjct: 202 EITAPRVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPNAEAGGVAVLNADDPFVAAMA 261

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW-------KQCSEQSWMEVQLQGKSMEVVHHGIG 289
            ++ A   K +Y   +++       ++          +  S+       + + V     G
Sbjct: 262 PRTEA---KVVYYSTENRRGGAPAAQYYATDIVLDDVARPSFTLHSPDAEPVAVKLQVFG 318

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L        L    DT   ALS    +     R      +   T+ID+SYNAN
Sbjct: 319 SHQVSNALAAAAAAIELGVSADTVAAALSGH--RLASEHRMDVRTRRDGVTIIDDSYNAN 376

Query: 350 PASMK-AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           P SM+ A  ++    +   + R IAVLG+M E+G  ++  H  L E L+ Y++ H+   G
Sbjct: 377 PDSMRAAIAALAYTAAARPDARSIAVLGEMGELGSDAEQSHRQLGEFLAKYHVEHLIAVG 436


>gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
 gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
          Length = 434

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 200/446 (44%), Gaps = 42/446 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  ++ DSR       F  I G   DGHD+I  AV+KGA +             + IPV
Sbjct: 22  LVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPDNLVVIPV 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                 + AL   A          ++AITGS GKT+TK+M+ + L    KT+   G++N+
Sbjct: 82  ---KSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKTAGNFNS 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G+PLT+ RMP D +  + E+GM+  G+I  L+ L +P +A +T I  +H     G   
Sbjct: 139 DVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSKLAKPDVAFVTNIGESHGEQVGGRTG 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA AK EI  GL+  G + ++ D+    LL  +         Y  G  + AD ++   + 
Sbjct: 199 IAKAKLEIKAGLKADGRLIVDADEP---LLSGQG--------YRVGYDETADGKIEVIET 247

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA--------IKAL 317
             + S  +       ++V    +G H  +N      I   L   +D A        IK  
Sbjct: 248 TFDASIFKYNGDLYELKV----LGAHQIRN--AAYAIACGLAFGLDHAMIQRGLDRIKLT 301

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+   K+  G+ +          LI+++YNA+P SM AAI  +  +   G  +R+ VLGD
Sbjct: 302 SMRMEKQMFGEAH----------LINDAYNASPTSMIAAIETIKSL--EGFSKRVLVLGD 349

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLF 436
           M E+G   Q  H  +   ++   ++   L G     + D +  S ++V    T++     
Sbjct: 350 MYELGADEQMQHEQVGGAVT-SPVTDCILVGDKAKWIADGIQDSRVNVKMVPTVEEAKAL 408

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +        VV++K+S      RL+ 
Sbjct: 409 LHHYQRPDTVVLLKASRGLALERLVQ 434


>gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 468

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 210/451 (46%), Gaps = 40/451 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IPVFG 87
           I  DSR I   + F A+KG   DGH FI  A+ +GA  V++  + ++   S +  I  FG
Sbjct: 33  IKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVILKDEEMSKFTSFNKDISFFG 92

Query: 88  VD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V   DV          A L S   I+A+TGSVGKTTTKE +   L    + +   G+YN 
Sbjct: 93  VPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGNYNT 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +G  LT+   P + +F + E+G +  GEI  + +  RP  +VIT++ P HL  F GI+ 
Sbjct: 153 LLGCCLTILVAPRNTEFLVLEMGANAKGEIGEIANRFRPSSSVITSVDPVHLEGFGGIDG 212

Query: 206 IASAKAEIFEGLEKTGTIFLNYD----DSFFELLK---AKSHALGIKT--IYSFGKSK-- 254
           +  AK EI     K   +F+N D    +S  + LK   +K  ++G  T  IY    S   
Sbjct: 213 VLGAKLEIVTADCK--LLFVNGDSPILNSGIDKLKHRPSKIISVGTSTSCIYRITDSSLR 270

Query: 255 -NADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            + +   RK    S      +E +L GK      H +   +A  +    G+        D
Sbjct: 271 LDGNHYFRKITIDSPFGLKTVESKLWGK-----QHTLIISLAFAVGCEYGVAP------D 319

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L V     GRG   +    +G    IDESYNA+P S+KAAI  L  I     GR+
Sbjct: 320 DIAQGLFVMSLPRGRGAILQS--EEGVL-FIDESYNASPVSVKAAIDNLCLIPSR--GRK 374

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           IAVLG M E+G  +  FH ++ +  +      V + G     +        +V   + M+
Sbjct: 375 IAVLGGMKELGSYANRFHDEILD-YAAKAADQVLIHGSEWKGINKNYK---NVLCLQDME 430

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   +++ L  GDVV+VK S +    R+ +
Sbjct: 431 DIVNHLKAILRTGDVVLVKGSRAYEMERVYD 461


>gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
 gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
          Length = 433

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 196/444 (44%), Gaps = 82/444 (18%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P  AF A+ G    G+ F+  A+  GA  V+ + D+  ++         VD
Sbjct: 23  LTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTDLDVPRAVR--------VD 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNN 145
           D  GAL   A + R ++   ++ ITGS GKTT K     AL +    +  T   I  +  
Sbjct: 75  DARGALFAWARSERAKNP-LVVGITGSAGKTTAKSYAAAALDAHFMPVFNTMPAIACFLV 133

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             G     ++ P+     + E+G+ H+GE+  L  LVRP + V+TTI PAHL  F  +E 
Sbjct: 134 QYGA----SQKPL-----VVEMGIDHIGEMAELMDLVRPDVGVVTTIGPAHLEQFGMVET 184

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA  K +I                     L A+   +G +    F K+        ++  
Sbjct: 185 IAHEKGQI---------------------LTARRALVGSQAAAFFPKA--------QFPH 215

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA------------QNMLMTLGIVSILTADV--- 310
                + +V  +G+ +E+      +               Q     LG+V    A +   
Sbjct: 216 VDSYGFGDVTFRGEGLELSPQAARFRFGGMGVILPLASRVQAEAAVLGMVLAREAGIALA 275

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-G 369
           D A++  +V  P    G RYR  L+ G FT+ID++YNA+P +++AA+  L  + P GE G
Sbjct: 276 DAAVRMSAVEVP----GGRYR--LHPGRFTVIDDAYNASPVAVRAALDALHALKPEGEVG 329

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           RRI+VLG M E+G   +  H   AEV S          G    A      + +      T
Sbjct: 330 RRISVLGRMLELGPTERELH---AEVGSYAREQADLTYGVGEFA------QELGERAFAT 380

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSN 453
           +  L   + + + DGD+V+VK+S 
Sbjct: 381 VPELLADLLNEVRDGDIVLVKASR 404


>gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 505

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 143/493 (29%), Positives = 212/493 (43%), Gaps = 54/493 (10%)

Query: 16  GHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+ + I P   V G +  DSR IAP   F A+ G   +GHDF   A++ GA L +++ DM
Sbjct: 15  GYLVNIDPDAVVPGPVEFDSRKIAPGSVFLALPGARVNGHDFAAQAIKDGATLALLSRDM 74

Query: 75  VASIGSLSIP-VFGVDDVLGALN-----------------------KLAVAARLRSKATI 110
              + ++ IP V  V+    AL                        +L     LR    +
Sbjct: 75  --GVPAVIIPHVEHVETNATALEYDRDGEGEAALAALSKLAHHTVTELVAHHGLR----V 128

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I +TGS GKT+TK+M+   L +  +T A  GS+NN IG P T  R      F + E+   
Sbjct: 129 IGVTGSAGKTSTKDMIATILRTQGETVAPPGSFNNEIGHPYTALRCTESTRFLVAEMSAR 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNY 227
            +G I  L  +  P I  +  +  AHL  F   E IA AK E+ E L   +  G   LN 
Sbjct: 189 GIGHIAHLARIAPPTIGAVLNVGTAHLGEFGSREAIAQAKGELVEALPSADDGGVAILNA 248

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--------WKQCSEQSWMEVQLQGK 279
           DD     +  ++ A  I      G++ +                   +  S+      G+
Sbjct: 249 DDRLVSGMAPRTSARVITFSVKSGEAGDDPADDHDAVIATDVVLDSSARASFTLTMPTGE 308

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  V     G H   N L    +   +   VD    ALS  H       R      +   
Sbjct: 309 SAPVQLQVYGQHQVANALAAAAVGFAVGMSVDEIATALS--HHTAASANRMDVRNRRDGV 366

Query: 340 TLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           T+I++SYNANP SM+A I+ L S +    + +  AVLG M E+G  +   H  + E L  
Sbjct: 367 TIINDSYNANPDSMRAGIAALASTVQAREDAQSWAVLGQMGELGASATDEHYSIGEELGR 426

Query: 399 YNISHVWLSGF----HVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           + I+HV + G       LA   KD+    + V + + +D     + SS+   DVV++K+S
Sbjct: 427 HQINHVVVVGNGVNQRALAHGAKDS---GVDVTHVDDVDAAVDNVWSSVRPDDVVLIKAS 483

Query: 453 NSCGFYRLINLLL 465
            S G +R+   LL
Sbjct: 484 YSDGLWRVAEGLL 496


>gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 456

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 198/438 (45%), Gaps = 25/438 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F N IS+DSR+I   + F AIKG ++DGHDF+   ++KG   VV+  D +  +     
Sbjct: 26  QTFKN-ISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVI-RDGMQHLLPEKF 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P + V + L +  KLA+  R      ++ ITGSVGKTTTKEM+   L  + K      +Y
Sbjct: 84  PYWLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLTQLNY 143

Query: 144 NNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           NN IGV     R  +D DF     I E+GM  LG+I  L+    P IAVIT I  +H+  
Sbjct: 144 NNEIGV----GRTILDSDFKDKILIIEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGI 199

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-F 258
               E I  AK EI + L+ +G + +  +D F E    K+ +  I  +     ++  D  
Sbjct: 200 LGSKENITYAKCEITKYLKPSGVVIIPANDLFLEETLKKNWSGRIIKVDLLDINQKVDSI 259

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             +       +S   + ++ K  E+     G+H A N L    +      +     K   
Sbjct: 260 NKKNLIGFFNRSNNSIIIEDKLFEISLK--GFHNAFNFLFVYAVAKEFGIEFKDTNKF-- 315

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +GR K  +         + DE+YNA+P S+KA I  L     +       + G +
Sbjct: 316 NFLTLDGRNKIIKSKKT----VIYDETYNASPESLKACIINLLNNPNN----HFLIFGSI 367

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            E+G  S+ +H +L + +   +I            +   D L +S    +   ++ + + 
Sbjct: 368 QELGSKSKKYHKELFDFIVKSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGIT 427

Query: 437 IQSSLVDGDVVVVKSSNS 454
           I      GD ++VK S +
Sbjct: 428 INKYTKKGDFILVKGSRN 445


>gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
          Length = 506

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 217/506 (42%), Gaps = 56/506 (11%)

Query: 1   MNPLWTFHDLLQAIQG--HSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD-- 55
           M P+ T   + QA+ G  H +   P   V+G +  DSR I     F A+ G   DGHD  
Sbjct: 1   MIPM-TLAQIAQAVGGTLHDVDD-PSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHA 58

Query: 56  -------FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAA- 102
                   +     +  G+  +  + + + G+ ++ +    D     VL AL KLA A+ 
Sbjct: 59  AGAVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHDRDGSGAAVLAALGKLARASV 118

Query: 103 -RLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            RL +++  T++ +TGS GKT+TK++L   LS +    A  GS+NN +G P T  R   D
Sbjct: 119 DRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADAD 178

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+   L  
Sbjct: 179 TRFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPS 238

Query: 220 T---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
               G   LN DD     +  ++ A     +   G S NAD +    +   +Q+     L
Sbjct: 239 AADGGVAVLNADDPLVAAMADRTEA----RVVMVGLSGNADVRATDVR-LDDQARASFTL 293

Query: 277 QGKSMEV-----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              +  V     VH   G H   N L    +     A +D    AL    P   R  R  
Sbjct: 294 TCAAGAVPVTLAVH---GEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSAR--RME 348

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSF 388
                   T++++SYNANP SM+AAI  L  ++  G G   R  AVLG+M E+G  S   
Sbjct: 349 VRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVE 408

Query: 389 HIDLAEVLSLYNISHVWL--SGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439
           H  +       +++ + L   G  V A+             +IHV    +       ++ 
Sbjct: 409 HDAIGRFAVRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASA---IALLEQ 465

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            L  GD+V+VK+S S G + + + +L
Sbjct: 466 ELRAGDLVLVKASQSIGLWEVADAVL 491


>gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia HI2424]
          Length = 468

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 196/452 (43%), Gaps = 32/452 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR++   + F A+KG  +D HDF+     +          +  +   +++P+  
Sbjct: 27  NRVSTDSRTVGAGDLFVALKGERFDAHDFLGDVAAR----GAAAALVAHAPAGIAMPMIE 82

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYN 144
             +   AL  LA   R+R    ++A+TGS GKTT KEM+     A        A  G+ N
Sbjct: 83  GGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N +G+PLTL R+       + E+GM+H GE   L  L  P +A++      H    + ++
Sbjct: 143 NDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAPTVALVNNAQREHQEFMATVD 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A   A +   L   G      DD++  + +  +    I         +  D Q+    
Sbjct: 203 AVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRILDFALHDAERQNDAQVVGRM 262

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E   + +     ++ V    +G H A+N L            +    + L  F P +
Sbjct: 263 HGGE---LAIDTPAGAVTVRLRALGEHNARNALAATAAALGAGVALSAIRQGLEAFEPVK 319

Query: 325 GRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMG 382
           GR +  + ++   G  T++D++YNANP SM+AAI VL +  +P     R+ V+GDM E+G
Sbjct: 320 GRLQVKQASVGSLGGATVVDDTYNANPDSMRAAIDVLAAHPAP-----RVLVIGDMGEVG 374

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQS 439
           +   +FH ++        I  ++       AL DA  R     Y +T    D +   + +
Sbjct: 375 DEGPAFHREIGAYARERGIDALF-------ALGDA-SRDACTAYGDTARHFDDVGALVSA 426

Query: 440 SLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
            L  G      V+VK S      R+++ L  +
Sbjct: 427 LLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 427

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 209/450 (46%), Gaps = 49/450 (10%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           ++S+ +   + F A+KG  +DGHDFI  A+++GA  V+    +V S   + +        
Sbjct: 11  LNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSDRIVLVK------- 63

Query: 92  LGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              +  LA  ARL+   S  TII ITGS GKTTTKE+L   L   +  +   G+ N   G
Sbjct: 64  -NTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEYG 122

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PL++       +  + E+  +  G+I  L  +  P +AV+  +  AHL  F   E I  
Sbjct: 123 LPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNVGSAHLEFFKSRENIME 182

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI +  +K   +   +DD     L+ K   L    ++ FG +K  D  L  W     
Sbjct: 183 AKLEIVKHSKKDSAVVTFFDDGD---LRKKVPVLRENVLF-FG-TKGGDVVLEDWWYYEN 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVD----TAIKAL-SVFH 321
            +  E ++ G S  +   G  ++  Q  N+  +L ++ +L   VD    + +KA+   F+
Sbjct: 238 STISEYRMFGSSFTIKLPGF-WNRGQLLNLAASLCVMKVLGEKVDVLELSNLKAVPGRFN 296

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            KE  G R           +ID++YNA+P + + AI  L +      GR+ AV+G M E+
Sbjct: 297 VKEVEGVR-----------IIDDTYNASPEAFQMAIEALLKFP----GRKFAVVGAMKEL 341

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSIHVHYSETMDGLFLFIQ 438
           GE S+ FH  L + L         L G +V + +     +     V  +++ + +   + 
Sbjct: 342 GEESKKFHEMLGKQLDA-------LDGVYVFSTEPEAGWIKTRKKVLETDSAEEIARDLY 394

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + +  GD V+ K+S +    R++ +   E 
Sbjct: 395 TRVRKGDTVLFKASRAVRIERVLEIFEREL 424


>gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
          Length = 468

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 175/390 (44%), Gaps = 25/390 (6%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF+     +    
Sbjct: 7   GEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVAAR---- 62

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                 +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT KEM+ 
Sbjct: 63  GAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  D Q+       E   + +     ++ V    +G H A+N L       
Sbjct: 243 LDFALHDAERQNDAQVVGRMHGGE---LAIDTPAGAVTVRLRALGEHNARNALAATAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
                +    + L  F P +GR +  + ++      T++D++YNANP SM+AAI VL + 
Sbjct: 300 GAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAH 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +P     R+ V+GDM E+G+   +FH ++
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384


>gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces oris K20]
          Length = 483

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 149/489 (30%), Positives = 224/489 (45%), Gaps = 39/489 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR  A    F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVLG 65

Query: 65  AGLVVVNTDMVASIGSLSI-----PVFG---VDDVLGALNKLA---------VAARLRSK 107
           A   +V +D+ A+   LS+     P  G   V+D + AL  LA          AA    +
Sbjct: 66  AVGAIV-SDLEAARSGLSLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQAAAERGER 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + E+
Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G S  G I +LT +     A +  I  AH+  F  IE +A+AKAEI  GL   GT  LN 
Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTAILNA 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK-QCSEQSWMEVQLQG--KSMEV 283
           DD+    +   +       + +F  + + AD +        + ++  ++ L G  +   V
Sbjct: 245 DDARAAAMAELA----PARVLTFSVRGRQADLRAENVDLDAAARAAFDLHLPGLAEPSRV 300

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                G H   N L   G+          V   + ++S+  P      R   +   G   
Sbjct: 301 QLAVAGVHNVSNALAAAGLALAAGIAPELVAERLGSVSIESP-----HRMDISELSGDLL 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID+SYNAN  SM AA++VL  ++  G+ RR+ V+ +M E+GE S + H    E+ +   
Sbjct: 356 LIDDSYNANIDSMTAALAVLPALA--GDRRRVVVISEMLELGESSAADHARTGELAARAG 413

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            + +   G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL
Sbjct: 414 AAMLIGIGSTQEALEAAGARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRL 473

Query: 461 INLLLEEFP 469
            + L E  P
Sbjct: 474 ADHLKEVRP 482


>gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
 gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
          Length = 468

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 41/398 (10%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR+  P + F A+KG  +D HDF L  V      
Sbjct: 7   GEAARLIPGAVVHGDPATTFERVSTDSRTAGPGDLFVALKGERFDAHDF-LGDVAARGAA 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
             +   + A    L++PV    +   AL  LA   R R    ++A+TGS GKTT KEM+ 
Sbjct: 66  AALVAHVPAG---LAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSAAHRLAVIELGMNHPGETDVLARLAAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++           GI
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAY----------AGI 232

Query: 245 KTIYSFGKSKNADFQLRK-WKQCSEQ-------SWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             + + G ++  DF L    +Q   Q         + +     ++ V    +G H A+N 
Sbjct: 233 WRVAATG-NRILDFALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKA 355
           L           ++    + L  F P +GR +  R  +      T++D++YNANP SM+A
Sbjct: 292 LAATAAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRA 351

Query: 356 AISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           AI VL +Q +P     R+ V+GDM E+G+   +FH ++
Sbjct: 352 AIDVLAAQAAP-----RVLVIGDMGEVGDEGPAFHREI 384


>gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
 gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
          Length = 435

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 218/449 (48%), Gaps = 42/449 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH+F+ HA Q GA   V++ +      +  +   
Sbjct: 14  ISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGD--NYGLEFV 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +  +      +  II I+GS+GKTTTKE   + LSS+ + +    SYN+ 
Sbjct: 72  RVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLSSVYRVFMSPKSYNSQ 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
           + VPL++     D DF + E+G+S   ++  L  +V+P +AVIT IA  H  +F  GI+E
Sbjct: 132 LTVPLSILMADGDEDFLLLEMGVSEPKDMHNLLSIVQPEVAVITHIATQHTMHFPRGIQE 191

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I   K +I +G   +    L  D  +++ L   S +   K  +SF   + ADF       
Sbjct: 192 IVEEKRQILQG---SSLQLLPKDSPWYKDLCEVSPS-AEKFSFSF-HDQAADF------- 239

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-------QNMLMTLGIVSILTADVDTAIKALS 318
           C    +  +   G +++     I   +A        N+L+++ +  +L   ++  I +L 
Sbjct: 240 C----YKSLDSHGVTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLETPLEHLISSLP 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                +    R+  +L  G   +I+++YNA P +M AA+  L   SP   G+ I +LG M
Sbjct: 296 DL---KLPPMRFEQSLRNGIH-VINDAYNACPEAMLAALEALP--SPSNGGKVILILGHM 349

Query: 379 CEMGELSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
            E+G  S+  H  +A + LS    ++ I   W    H++        S  V +      +
Sbjct: 350 AELGVYSEEGHALVATKALSRAHVIFFIGEKWSPVLHMVQH-----HSCQVEFYSAPHDI 404

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            + ++  +  GDVV++K S S     L+N
Sbjct: 405 EMILKDLVQQGDVVLLKGSRSLALESLLN 433


>gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
 gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
          Length = 478

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 204/450 (45%), Gaps = 37/450 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  ++G+ F L A++KG    +V+ D+          +  VD
Sbjct: 51  ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDEDVANDPR-----IIKVD 105

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L     LA   R +    +I ITG+ GKTTTKE++   LS         G++NN +GV
Sbjct: 106 NCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQKYNVLYTQGNFNNDVGV 165

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L     P   +IT +  AHL  F   E +   
Sbjct: 166 PKTLFRLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITNVGRAHLQGFGSFEGVIKT 225

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFF-------ELLKAKSHALGIKTIYSF--GKSKNADF 258
           K E+++ L   +   IF+N D+          E +    ++      YS   G+    + 
Sbjct: 226 KCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSPYSTDPDNQYSCISGEVLECNP 285

Query: 259 QLR-KWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            L+ +W+    +  M ++ +G+S    +V    IG +   N+L  + +      D    +
Sbjct: 286 FLKFRWR----EPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAIAVGINFGVDRKKIV 341

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL  + P   R +      N     LI ++YNANP+SM+AA+     +       ++A+
Sbjct: 342 AALEAYEPSNNRSQMTVTEKNH----LIVDAYNANPSSMQAALENFKIMQADN---KMAI 394

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LG M E+GE+S   H  + + L   +I  VWL G      ++           + ++ + 
Sbjct: 395 LGAMRELGEVSAEEHQHVVDYLKTSDIKTVWLVG------EEFEDTQCDFRKFKDVEEVK 448

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             I +    G  +++K SNS   Y+L  LL
Sbjct: 449 AAIAAEQPTGHYILIKGSNSTKLYQLPELL 478


>gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 185/407 (45%), Gaps = 67/407 (16%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
            G  + +V   + A I  L      V D   AL +L    R + ++  +IA+TGS GKTT
Sbjct: 4   NGCQVAIVERPIDAEIAQLV-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTT 58

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +
Sbjct: 59  TKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKI 118

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKS 239
           V+PH+A I  I  AHL  F G + I  AK+EI+  +   G   +   D F   ++  AKS
Sbjct: 119 VQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIREAAKS 178

Query: 240 HALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           H      I SFG              ++A+FQL   +     S++ +   G+        
Sbjct: 179 H-----QIMSFGAGGDVFATEIELLPQSANFQLHTPQGS---SFVRLPFAGE-------- 222

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              H  QN    +     L   ++  +K L+     +GR    + A +      ID++YN
Sbjct: 223 ---HNVQNATAAVAFALALGVSLEDIVKGLAQAQGAKGRLNFIQKAPH----LFIDDTYN 275

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
           ANP SM+AA  VL Q +    G ++ V+GD+ E+G+ S   H DL   L+   + H+   
Sbjct: 276 ANPTSMRAAAQVLLQQN----GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAV 331

Query: 407 ----------SGFHVLALK------DALP---RSIHVHYSETMDGLF 434
                     +G H   LK      +ALP     I  H  ++M  LF
Sbjct: 332 GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLF 378


>gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
 gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
          Length = 483

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 221/491 (45%), Gaps = 43/491 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR  A    F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDLG 65

Query: 65  AGLVVVNTDMVASIGSLS------IPV--FGVDDVLGALNKLA---------VAARLRSK 107
           A   +V +D+ A+   LS      +P+    V+D + AL  LA          AA    +
Sbjct: 66  AVGAIV-SDLEAARSGLSQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQAAAEQGDR 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + E+
Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G S  G I +LT +     A +  I  AH+  F  IE +A+AKAEI  GL   G   LN 
Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPEGIAILNA 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG--KSMEVV 284
                    A +     + +    + + AD +        + ++  ++ L G  +   V 
Sbjct: 245 ---DDARAAAMAELAPARVLTFSARGRQADLRAENVDLDAAARAAFDLHLPGLAEPRRVQ 301

Query: 285 HHGIGYHMAQNMLMTLGIVSI------LTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               G H   N L   G+         L AD    + ++S+  P      R   +   G 
Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGLAPELVAD---RLGSVSIESP-----HRMDISELSGD 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             LID+SYNAN  SM AA++VL  ++  G+ RR+ V+ +M E+GE S + H    E+ + 
Sbjct: 354 LLLIDDSYNANIDSMTAALAVLPALA--GDRRRVVVISEMLELGESSAADHARTGELAAR 411

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
              + +   G    AL+ A  R + V   +        I + L DGD V+VK SN  G +
Sbjct: 412 AGAAMLIGIGSTQEALEAARARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAW 471

Query: 459 RLINLLLEEFP 469
           RL + L E  P
Sbjct: 472 RLADHLKEVRP 482


>gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 465

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 39/378 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR+I   + F  + G  +D HD++  A   G    VV ++    +  + +P + V 
Sbjct: 30  ISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAFDLGIQAAVV-SEKYNGLVPIGLPHWVVP 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  ++A+  R      ++A+TGSVGKTTT+E++   LS + +  +  G+ NN IGV
Sbjct: 89  DTLYAYQQIALLHRRNLNLPVVAVTGSVGKTTTRELIRAILSPLGEIVSSRGNENNDIGV 148

Query: 150 PLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P T L+    D  F + E+GM   G+I  L+ +  P IAVIT +  AH+      E IA 
Sbjct: 149 PKTLLSGSETDAAF-VLEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAK 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+EI   L   G + + + D   E    +  +  I  +   G S N       W  C+ 
Sbjct: 208 AKSEITSYLSPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLN-------WLDCNN 260

Query: 269 Q------------SWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +            S +++Q      +G+  ++     G H A N L+ L + + L   + 
Sbjct: 261 EHFAFQDIEPDYISQIDMQNNFILFEGRKFKLPLE--GRHNAMNFLLALTVATELGLSI- 317

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L +  P  GR +   C    G + ++DE+YNA+P S+ A++ +L        GR 
Sbjct: 318 KKLDQLKINMPI-GRNRLVDC----GQYLVLDETYNASPESVIASLELLVS----KPGRH 368

Query: 372 IAVLGDMCEMGELSQSFH 389
            AVLG M E+G  S   H
Sbjct: 369 FAVLGTMLELGSESILLH 386


>gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
          Length = 465

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 39/378 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR+I   + F  + G  +DGHD++  A   G    VV ++    +    +P + V 
Sbjct: 30  ISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAFDLGIQAAVV-SEKYNGLVPTGLPHWVVP 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  ++A+  R      ++A+TGSVGKTTT+E++   LS + +  +  G+ NN +GV
Sbjct: 89  DTLYAYQQIALLHRRNLSLPVVAVTGSVGKTTTRELIRAILSPLGEIVSSRGNENNDVGV 148

Query: 150 PLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P T L+    D  F + E+GM   G+I  L+ +  P IAVIT +  AH+      E IA 
Sbjct: 149 PKTLLSGSETDAAF-VLEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAK 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+EI   L   G + + + D   E    +  +  I  +   G S N       W  C+ 
Sbjct: 208 AKSEITSYLSPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLN-------WLDCNN 260

Query: 269 Q------------SWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +            S +++Q      +G+  ++     G H A N L+ L + + L   + 
Sbjct: 261 EHFALQDIEPDYISQIDMQNNFILFEGRKFKLPLE--GRHNAMNFLLALTVATELGLSI- 317

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  L +  P  GR +   C    G + ++DE+YNA+P S+ A++ +L        GR 
Sbjct: 318 KKLDQLKINMPI-GRNRLVDC----GQYLVLDETYNASPESVIASLELLVS----KPGRH 368

Query: 372 IAVLGDMCEMGELSQSFH 389
            AVLG M E+G  S   H
Sbjct: 369 FAVLGTMLELGSESILLH 386


>gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 17/234 (7%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89
           +D R   P   F A  G H DGHD+   A Q GA         VA +GS   ++P   V+
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGA---------VAVLGSRPTALPTVVVE 81

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LA  V ARLR + T++ +TGS GKT+TK++L   LSS   T A  G+ NN +
Sbjct: 82  DARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAVLSSAAPTIATKGNLNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R      F + E+G   +G++  LT LV   +AV+  +  AHL  F     IA
Sbjct: 142 GVPLTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             K E+  GL   GT  LN DD     +++ +       + +FG +++AD ++R
Sbjct: 202 EGKGELVRGLVPGGTAILNADDPRVVAMRSLTDG----PVLTFGHAEDADVRVR 251


>gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 17/234 (7%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89
           +D R   P   F A  G H DGHD+   A Q GA         VA +GS   ++P   V+
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGA---------VAVLGSRPTALPTVVVE 81

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LA  V ARLR + T++ +TGS GKT+TK++L   LSS   T A  G+ NN +
Sbjct: 82  DARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAVLSSAAPTIATKGNLNNEL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R      F + E+G   +G++  LT LV   +AV+  +  AHL  F     IA
Sbjct: 142 GVPLTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             K E+  GL   GT  LN DD     +++ +       + +FG +++AD ++R
Sbjct: 202 EGKGELVRGLVPGGTAILNADDPRVVAMRSLTDG----PVLTFGHAEDADVRVR 251


>gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 462

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 213/450 (47%), Gaps = 47/450 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS+ P   FFAI+G   DGH+F+  A   GA   VV T  V     +S+P   V 
Sbjct: 32  VSFDSRSVRPNGLFFAIEG-ERDGHEFVQAASDAGAAAAVV-THFV----PVSLPQVLVK 85

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY------ACIG 141
           D   AL  L  A + RSK    +IA+ GS GKTTT +M+   LS IK+ +         G
Sbjct: 86  DTREAL--LDSAKKWRSKFDLPVIAVAGSNGKTTTTQMV---LSIIKERFQKGAWVGTEG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GV L L ++  +     FE+GM+H+GE+R L   + P I  +T     H    +
Sbjct: 141 NLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLA 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----AD 257
            +EE A    E+F  L + G   +N  D F   ++ +  A G   + +FG   +     +
Sbjct: 201 SLEETAKENGEVFAQLPRQGVAVINAADPF--AVEWRKMA-GNNRVVTFGTPDSDVYACE 257

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +   ++  +    ++++L+           G H   N +    ++  +  D+    K L
Sbjct: 258 VEGTAFRLVTPIGQIDIELKVP---------GKHNIVNAVNAAAVLFAMGRDLCDIKKGL 308

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLG 376
             F     RG+     L+ G   +ID+SYNANP SM AA+++LS+   P     +I V G
Sbjct: 309 ENFEAVSHRGE--VVTLDDG-SVVIDDSYNANPDSMNAAVNMLSEYQLP-----KIFVAG 360

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G  S  FH +L E +    I + +  G  +L   +        H+ ET + L   
Sbjct: 361 DMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAVEGYGEGAR-HF-ETQEELLAA 418

Query: 437 IQSSLVDGD-VVVVKSSNSCGFYRLINLLL 465
           ++  +V G   V+ K+SN    ++L + L+
Sbjct: 419 LKEEMVKGPHAVLFKASNFMKLFKLADELV 448


>gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
 gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
          Length = 462

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 213/450 (47%), Gaps = 47/450 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS+ P   FFAI+G   DGH+F+  A   GA   VV T  V     +S+P   V 
Sbjct: 32  VSFDSRSVRPNGLFFAIEG-ERDGHEFVQAASDAGAAAAVV-THFV----PVSLPQVLVK 85

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY------ACIG 141
           D   AL  L  A + RSK    +IA+ GS GKTTT +M+   LS IK+ +         G
Sbjct: 86  DTREAL--LDSAKKWRSKFDLPVIAVAGSNGKTTTTQMV---LSIIKERFQEGAWVGTEG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN +GV L L ++  +     FE+GM+H+GE+R L   + P I  +T     H    +
Sbjct: 141 NLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLA 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----AD 257
            +EE A    E+F  L + G   +N  D F   ++ +  A G   + +FG   +     +
Sbjct: 201 SLEETAKENGEVFAQLPRQGVAVINAADPF--AVEWRKMA-GNNRVVTFGTPDSDVYACE 257

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +   ++  +    ++++L+           G H   N +    ++  +  D+    K L
Sbjct: 258 VEGTAFRLVTPIGQIDIELKVP---------GKHNIVNAVNAAAVLFAMGRDLCDIKKGL 308

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLG 376
             F     RG+     L+ G   +ID+SYNANP SM AA+++LS+   P     +I V G
Sbjct: 309 ENFEAVSHRGE--VVTLDDG-SVVIDDSYNANPDSMNAAVNMLSEYQLP-----KIFVAG 360

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G  S  FH +L E +    I + +  G  +L   +        H+ ET + L   
Sbjct: 361 DMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAVEGYGEGAR-HF-ETQEELLAA 418

Query: 437 IQSSLVDGD-VVVVKSSNSCGFYRLINLLL 465
           ++  +V G   V+ K+SN    ++L + L+
Sbjct: 419 LKEEMVKGPHAVLFKASNFMKLFKLADELV 448


>gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
          Length = 468

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF L  V      
Sbjct: 7   GEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
             +   + A    L++PV    +   AL  LA   R R    ++A+TGS GKTT KEM+ 
Sbjct: 66  AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAATGNPI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  + Q+       E   + +     +M V    +G H A+N L       
Sbjct: 243 LDFALHDAERQVEAQVTGRLHGGE---LAIDTPAGAMTVRLRALGEHNARNALAAAAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
               ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI VL +Q
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +P     R+ V+GDM E+G+   +FH ++
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384


>gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
 gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
          Length = 482

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 180/405 (44%), Gaps = 36/405 (8%)

Query: 2   NPLWTFH---DLLQA-IQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +P+ T H   DLL+A I G  +   G  P    +    D+R++A  + F A+KG  +D H
Sbjct: 8   SPMMTLHQAFDLLRARIPGVRLVGEGATPLARAH---TDTRTLAAGDLFVALKGERFDAH 64

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F+     +            A +    +P   V D L AL  LA   R +    +IA+T
Sbjct: 65  QFL----SQARRAGAAAAIAHAGLADAGLPGIEVPDTLAALGALAAGWRAQRDLPLIAVT 120

Query: 115 GSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M+   L + K     A  G++NN +GVPLTL R+    +  + ELGM+H 
Sbjct: 121 GSNGKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + RP +A++      HL     +E +A     +   L   GT      D+F 
Sbjct: 181 GEIANLADIARPTVALVNNAQREHLEFMHTVEAVARENGSVLSALPADGTAVFPAADAFT 240

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW------MEVQLQGKSMEVVHH 286
            L +  +   G +   +FG++     ++R    C+   W      + +     + +    
Sbjct: 241 PLWRELA---GTRHCLTFGETAG---EVR----CAAAQWGGGAWQVRIDTPNGAFDTRLA 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L            + +  + L+ F P  GR +           T++D+SY
Sbjct: 291 IAGRHNVTNALAATACALAAGVPLASIAQGLAAFAPVNGRSRALAVRCGGRSITVVDDSY 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           NANP S+ AAI VL+ +     G R+ VLGDM E+G+    FH +
Sbjct: 351 NANPDSVHAAIEVLAALP----GPRLLVLGDMGEVGDQGPQFHAE 391


>gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 446

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 186/378 (49%), Gaps = 28/378 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I IDSR +   + F A+KG   DG+DFI  A+++GA   V N        S +  VF   
Sbjct: 21  IRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNR------SSDNPAVFFHP 74

Query: 90  DVLGALNKLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L  +  AA +   + I   IAITGS GKTTTKE+L   LS   K +   G+ N  
Sbjct: 75  DPKKLL--IEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLNTE 132

Query: 147 IGVPLTLARMP---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           IG+P+ +        + D+ IFE G S  G+I FLT LV P IAV+  +  AH  NF+  
Sbjct: 133 IGIPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLNVGTAHRGNFNDE 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            E+   K  IFE L+K  T   N DD   + +++    L  K ++ FG+ +N D ++ K+
Sbjct: 193 TELLQEKCSIFETLQKDSTAITNGDD---KRIRSMISELSCKKLF-FGQ-RNGDLKIMKF 247

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHP 322
                 +++  +  G+       GI ++  Q +      ++ L+  ++  +  ++ +  P
Sbjct: 248 DYSKNNTFVAFKAFGEMKMAKLKGI-WNSGQLLDFGAAYLTALSLKIEEPLLNINRIILP 306

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R        N     LI++ YN++  S+++AI  ++++      R  AV+G + E G
Sbjct: 307 FNNRF----SVENIAGIILINDCYNSSLESVESAIKSIAKLKKE---RTFAVVGSILEQG 359

Query: 383 ELSQSFHIDLAEVLSLYN 400
           + S+  H +L  +L+ ++
Sbjct: 360 KYSKKTHEELGRLLNFFD 377


>gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium diphtheriae]
          Length = 496

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 208/479 (43%), Gaps = 50/479 (10%)

Query: 20  GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFI-------------LHAVQKGA 65
           G  P+  V G +  DSR ++    F A+ G   DGHDF+              H V+  +
Sbjct: 20  GTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVPAALESGAAAALVAHPVKIDS 79

Query: 66  GL-----VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-----LRSKA-TIIAIT 114
           GL     V   T    S  S +        V   L  + + AR     L ++  T++ +T
Sbjct: 80  GLAPAIVVPPATGQQQSANSYATEHDEDGSVAAVLQGMGLIARRVIDTLTAQGLTVMGVT 139

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKT+TK+ML   LS+   T A  GS+NN IG P T  R      + + E+    +G 
Sbjct: 140 GSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHPYTALRCTEQTRYLVAEMSARGIGH 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  +  P I V+  +  AHL  F   E IA AK E+ E L   G   LN DD     
Sbjct: 200 IAHLAQIAPPKIGVVLNVGTAHLGEFGSREVIAQAKGELVEALPHDGVAVLNADDDLVAG 259

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI-GYHM 292
           ++ ++ A   K I     S++AD       +  + +     L  G++  VV   + G H 
Sbjct: 260 MRTRTDA---KVITFSANSQDADVYATDI-ELDDYARARFTLHIGEAENVVTLRVAGQHQ 315

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANP 350
             N L            +D   +ALS           +R AL       T+ID++YNAN 
Sbjct: 316 VSNALAATAAAYAAGIAIDDIAEALS----NHLGASAHRMALMHRSDGATIIDDAYNANT 371

Query: 351 ASMKAAISVLSQI----SPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            SM+A ++ LS      S  GE     AVLG M E+GE S + H ++  +L   N+  + 
Sbjct: 372 ESMRAGLTALSTTAHNKSHKGEASHAWAVLGPMSELGEESVAAHEEIGRLLGELNVHGLI 431

Query: 406 LSGFHV--LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           + G     LAL D   RS    +   +T +   L  Q ++   DV +VK+SN+   YRL
Sbjct: 432 VVGDSADSLALADGARRSNVTTLMARDTAEAADLLDQ-NMGSADVALVKASNA---YRL 486


>gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 184/401 (45%), Gaps = 33/401 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88
           +  DSR +AP + F  I+G  +DGHDF    V++GA +++   D       S  + +  V
Sbjct: 29  VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAERDPFNGECPSADVTIMVV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD + AL +LA   R+RSKA ++ +TG+ GKTT KE+L   L     T     + NN IG
Sbjct: 89  DDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQIG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PL++     +  F + E G+S   ++  L  ++RP I ++  +   H++   G   +A 
Sbjct: 149 LPLSMLEATGNESFWVMEAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGL-GDRGVAY 207

Query: 209 AKAEIFEGLEKTGT--IFLNYDD---------SFFELLKAKSHALGIKTIYS--FGKSKN 255
            K+ +   L + GT  +  +YDD            +   A    +G +  Y      +  
Sbjct: 208 YKSRLLAHLAEGGTGLVCADYDDLVREARSVCRRLQFFSASGRGVGYRAAYDGPVADAAG 267

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI--LTADVDTA 313
           +D  +R            V L G   EVV    G   A+N+        +  L+ +   A
Sbjct: 268 SDGGVR--------GRYRVWLDGSVHEVVAPFRGAFGAENVAAVAAAAHLCGLSGEEIAA 319

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             A +V  P++    R+ CA   G F  ID++YNANP S    +  +++++  G    + 
Sbjct: 320 GLAEAVL-PRQ----RFACA-TVGGFVCIDDTYNANPLSSARMVEAVTEMAAGGP--LVF 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           VLG+M E+GE +   H  L   L+      V+  G +  A+
Sbjct: 372 VLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAV 412


>gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
 gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
          Length = 433

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 182/392 (46%), Gaps = 37/392 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS---LSIPVF 86
           I+ D+R       FFA+ G  ++G+ F   A++ G    VV+    A+      L +P  
Sbjct: 16  ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEPQYANADDDRYLMVP-- 73

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L AL  LA   R +  A II ITG+ GKTTTKE++   L+         G++NNH
Sbjct: 74  ---DSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQGNFNNH 130

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL R+  + + G+ E+G +H GEI  L  +  P   +IT +  AHL  F   E +
Sbjct: 131 IGVPKTLLRLKPEHEVGVIEMGANHPGEIACLAGIAEPDCGMITNVGKAHLEGFGSFEGV 190

Query: 207 ASAKAEIFEGLEK--TGTIFLNYDDSF-------FELLKAKSHALGIKTIYSFGKSKNAD 257
              K E+++ L      T+F++ D+ +         L++          I     S    
Sbjct: 191 IKTKGELYDFLRTKLKSTVFIDNDNPYLCDISQGLNLVRYGCRPAENLLIEGQAASSTPL 250

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            Q R W+  S  +W +V  Q          IG +   N+L    +    +   +    AL
Sbjct: 251 LQFR-WRH-STDAWHDVGTQ---------LIGSYNLTNLLAAACVGLYFSIAPEQIDHAL 299

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLG 376
           S + P   R +    A N+    LI ++YNANP SM AA++   ++  P    +++A+LG
Sbjct: 300 SHYTPGNNRSQLAVTAHNR----LIIDAYNANPTSMNAALTNFEEMDVP----KKMAILG 351

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           DM E+G +S + H  L + L    I  VWL G
Sbjct: 352 DMKELGTVSHAEHQKLVDGLRHSTIHTVWLVG 383


>gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 447

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 30/442 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G +IDS+ + P + FFA+ G   DGH F+ HA   GA   VV+ D      S  + + 
Sbjct: 26  ITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGD--SFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL +         + T++ ITGSVGKTTTKE     LSSI KT+A   SYN+ 
Sbjct: 84  RVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205
           + VPL+L     D D  I E+G+S  G ++ L  +V+P IAVIT I   H  +F  GI+E
Sbjct: 144 LTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQE 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I   K+ I   L+K+    L  D  ++  L++ S     K  +SF     ADF    +K 
Sbjct: 204 ILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPT-AEKFSFSFNDPL-ADF---CYKA 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            S  S + +Q   ++   +     Y  A  N+L+ + +  IL    +  I++L      +
Sbjct: 256 ISRDSVV-IQTPEENY-CLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPEL---K 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+  ++  G   +I+++YNA P +M AA+  L    P   G+ I +LG M E+G  
Sbjct: 311 LPPMRFEHSMRNG-MQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAELGRY 367

Query: 385 SQSFHIDLAEVLS-----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           S+  H  +AE  +     ++ I   W+    VL        S  V +  +   +   ++ 
Sbjct: 368 SEEGHALVAEKAASRGDMIFFIGEKWIPVQSVLK-----SYSCEVSFFSSAQDVKDILKQ 422

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
               GDV+++K S +     L+
Sbjct: 423 VARYGDVILLKGSRALALESLL 444


>gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
 gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF L  V      
Sbjct: 7   GEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
             +   + A    L++PV    +   AL  LA   R R    ++A+TGS GKTT KEM+ 
Sbjct: 66  AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAATGNPI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  + Q+       E   + +     +M V    +G H A+N L       
Sbjct: 243 LDFALHDAERQVEAQVTGRLHGGE---LAIDTPSGAMTVHLRALGEHNARNALAAAAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
               ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI VL +Q
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +P     R+ V+GDM E+G+   +FH ++
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384


>gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599]
 gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 388

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 166/351 (47%), Gaps = 14/351 (3%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GKTTTKEM+   LS    TY  + + N          R+  +    + E G+
Sbjct: 22  VIAVTGSAGKTTTKEMIYSILSLRMPTYKSMYNKNFLGNTRAHTKRIRDEHKAAVLEYGI 81

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
              G +R    +++P + VIT I  AH+ NF G  +++A AK E+   ++ TGT+FLN D
Sbjct: 82  YRSGHLRQHCKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTELIRHMKPTGTVFLNRD 141

Query: 229 DSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +      + + LG  T  I +FGK + AD++  + K        E  L+G+       
Sbjct: 142 CPYSREFVQQPY-LGSFTGKIVTFGKEQEADYKAGRTKIEGNGFRFECSLRGEKESFFVP 200

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   +   VD   + LS F  +  R   YR A N     ++D++Y
Sbjct: 201 IPGEHNLYNALAAIAVAHTMGIPVDDIRRGLSQFRGQRKRLTSYRLANN---IQVLDDTY 257

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++NP + KAAI VLSQ+   G   +IAVL  M EMG+     H D+   LS  N+ +++ 
Sbjct: 258 SSNPDAAKAAIDVLSQV---GHTTKIAVLASMLEMGKYDVKGHEDVGIYLSQKNVDYLYT 314

Query: 407 SGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            G     +  A  RS      V +  +  GL   +   L      +VK SN
Sbjct: 315 LGNSARYIARAAIRSGFPANRVRHCLSKAGLHRRLAKQLKPDTAFLVKGSN 365


>gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
 gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
          Length = 504

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 211/483 (43%), Gaps = 54/483 (11%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV----------VVN 71
           P   V G +  DSR +     F A+ G H DGHD    AV+ G   V          +V 
Sbjct: 23  PSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAASAVEAGVVAVLAARPVGVPAIVV 82

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-------LRSKA-TIIAITGSVGKTTTK 123
           T   + + S ++ +    D  GA    A+A         L +K  T++ +TGS GKT+TK
Sbjct: 83  TPTPSDVPSKAMALEHDTDGSGAAVLAALAKLARASVDGLTAKGLTVVGVTGSAGKTSTK 142

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L   L  +    A  GS+NN +G P T  R   D  F + E+     G I  L ++  
Sbjct: 143 DLLAAVLRPLGPVVAPPGSFNNELGHPWTALRADADTGFLVLEMSARGRGHIASLANIAP 202

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSH 240
           P I V+  +  AHL  F   + IA+AK E+ E L   ++ G   LN DD     +  ++ 
Sbjct: 203 PKIGVVLNVGTAHLGEFGSRDAIAAAKGELAESLPSADEGGVAILNADDPLVAAMAPRTS 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKW---KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           A     +   G+S++A  +       ++   +  +       ++E+  H  G H   N L
Sbjct: 263 A----RVVLVGRSESAHVRATDIVLDEKARARFTLTAPTGSVAVELAVH--GEHQVGNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +     AD++   +ALS       R  R          T++++SYNANP SM+AA+
Sbjct: 317 AAAAVALECGADLEQIAQALSGAAAVSAR--RMDVRDRPDGVTVVNDSYNANPDSMRAAL 374

Query: 358 SVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
             L  ++  G G   R  AVLG+M E+G  S   H  +       ++S + + G    A 
Sbjct: 375 KALVSMARSGRGAARRSWAVLGEMAELGPESVVEHDAIGRFAVRLDVSRLIIVGTGRPA- 433

Query: 415 KDALPRSIHV------HYSET------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                R++H        + E       + G    +++ L  GD+V+VK+S S G + + +
Sbjct: 434 -----RAMHQGAVMEGSWGEESILVPDIAGAVALLEAELAPGDLVLVKASQSIGLWEVAD 488

Query: 463 LLL 465
            +L
Sbjct: 489 TVL 491


>gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 458

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 204/465 (43%), Gaps = 46/465 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-----------PHYD 52
           LWT  ++ +A+     G  P+  ++ ++ DSR++ P   F A+ G              D
Sbjct: 5   LWTVAEVARAL--GLAGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRD 62

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATII 111
           G +F  +A Q GA  ++V       I  +S+P   V D L   L  LA AAR R    +I
Sbjct: 63  GWEFAANAEQAGAVAMIVPH----RIDGISVPQLVVPDTLIDGLWALARAARARFHGPVI 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            +TGS GKT+TKE +    ++     A   S+NN  GVPLTL          + E+GM+ 
Sbjct: 119 GLTGSAGKTSTKEFI----AAYPGASASPSSFNNFWGVPLTLCNADPSASVWVVEMGMNQ 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GEI  LT L +P +A++  + P HL     +E I   K  I  GL   G + L  D + 
Sbjct: 175 QGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRKEKVSIARGLPSDGILVLPVDLAA 234

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E             +  FG    AD          E   +   + G+ +         H
Sbjct: 235 PEW---------PGRVLRFG--AGADVHAMSQVPAGESWDVTADIAGRHLAFSLTPGAPH 283

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  L  V+    D     + L       GRG   R     G   LID+S+N NPA
Sbjct: 284 RLHNALAALASVAAAGLDPVLLARELGEVGIMTGRGVEQRI----GEIVLIDDSFNGNPA 339

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM AA+  L Q  P   GRRIAV+GDM E+G+ + ++H D+  V  +  I  V+  G  +
Sbjct: 340 SMAAALDSL-QARPV-RGRRIAVIGDMLELGDEAPAYHADM--VGHVTGIDGVYCVGPLM 395

Query: 412 LALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSN 453
             L + LP    + + E   T+D     + + L   DVVV+K S 
Sbjct: 396 RHLFEKLPPEKRLGWHEDPATLDA--SQVAALLAPDDVVVIKGSK 438


>gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CMR15]
          Length = 485

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 208/464 (44%), Gaps = 26/464 (5%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-- 74
           H +G  P   +  ++ DSR++ P + F A+ G  +D HDF+   V +GA  V+V+  +  
Sbjct: 22  HLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRRLAD 79

Query: 75  VASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +  +  LS + V  V D   AL +LA   R R    ++A+TGS GKTT KEM++   +  
Sbjct: 80  MPDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMISAVFACA 139

Query: 134 ---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                  A  G+ NN IG+PLTL R+       + ELGM+H GE   L  + +P +A+I 
Sbjct: 140 VGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQPTVALIN 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKT 246
                H      +E +A+  A +   L   G      D      +  L +A   A G + 
Sbjct: 200 NAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYAPLWRA---AAGTRR 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  FG    A          +    ++V             +G H A+N L         
Sbjct: 257 VLDFGIEGGAVSA--AVTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNALAATACALAA 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +   +ALS F P +GR +R +   + G   +ID++YNANP S++AAI  L+ +   
Sbjct: 315 GIAPEVIAQALSAFAPVKGRLQR-KPGHHGGL--VIDDTYNANPDSVRAAIDALATLP-- 369

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
               R  VLGDM E+G    +FH ++        I  V  +G   L + +A       H+
Sbjct: 370 --APRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELTLHMVEAFGGGAR-HF 426

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           + + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 427 A-SAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 469


>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 463

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 215/479 (44%), Gaps = 35/479 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  ++L+  +G   G    G  V  +  DSR I P + F A+ G   DGHDF+  A  
Sbjct: 1   MLTLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V+   V  +     P+  V D +  L  LA   R      ++ ITGS+GK++T
Sbjct: 61  RGAVAALVDRAHVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHL 181
           KE++    S   +      S+NN IG+PL+L  +  D +  + E+G ++  GEI  L  +
Sbjct: 121 KEVVWSVASQRFRAIRSQRSFNNEIGLPLSLMEIGSDTEVVVLEIGGAYAPGEISRLAEI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I V+T ++ +HL+    +E IA+ KAE+   L + G   LN DD    L+  K   
Sbjct: 181 ARPTIGVVTNVSHSHLARMGSLEAIAATKAELPASLPEDGVAVLNGDDLRVRLMADKCRC 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHM 292
             I+    +G + + + +    +           L G S +++  G         +G H 
Sbjct: 241 RVIR----YGLAPDCEVRAENVESHG--------LDGISFDLLVDGGRHHVHVPLLGQHS 288

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
              +L  + +   L   V+  +  L     +     R       G  TLID++YNANP S
Sbjct: 289 VHTVLAGVSVGLALGMSVEETLPGLRDPSIQ----LRLLVVPAIGGATLIDDTYNANPTS 344

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             AA+++L+++      RRIA  GDM E+G   +  H  + +  +   +  ++  G    
Sbjct: 345 SLAALNLLAELPAR---RRIAAFGDMLELGSYEEEGHRIVGKRAAAV-VDRLFTMGPRAR 400

Query: 413 ALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + D    S      V   +T   L   ++ ++ +GDVV+VK S       ++  L + 
Sbjct: 401 IIADEAVASGLAPDAVVAVDTKQDLIDALKETMREGDVVLVKGSRGIQLEHVVAALRDR 459


>gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 423

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           IDSR + P + F AIKG + DGHDF+ HA + GA   +V  D       + +P     + 
Sbjct: 15  IDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKD-TGFENQIIVP--NTVEF 71

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           LG L K  V    + K  II ITGS GKT+TKE++   LSS    +   G+ N+ IG+PL
Sbjct: 72  LGQLAKTIVE---KFKPKIIGITGSNGKTSTKEIVWSVLSSEISAFKNEGNLNSEIGLPL 128

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           ++          I E+    +G+I +L  +  P I V+  +  AH+     +E I   K 
Sbjct: 129 SIINSYRGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSAHVGVAGSVENIFKGKW 188

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I   +E +    +N+DD      K +           FG +   D+ L K +     + 
Sbjct: 189 QI---VENSKEALVNFDDERMRCTKCR----------YFG-TTGGDYILSKREYNGSSTI 234

Query: 272 MEVQLQGKSMEVVHHGIGY---HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +  + +G+  E  +   GY    MA + L+  GI  ++  DV      L+ + P +GR  
Sbjct: 235 LTFEYEGE--EFYYQLPGYWTKPMALSALVAFGIADMI--DVLFNPLNLANYKPLKGRFN 290

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +R   ++G+  LID++YNA+  S KA I  + +  P     R A++G M E+GE S  +
Sbjct: 291 VHR--FSKGY--LIDDTYNASYESFKAGIEEILENFPK---PRYAIVGAMKELGEYSTYY 343

Query: 389 HIDLAEVLS 397
           H  L+E+L 
Sbjct: 344 HKKLSELLE 352


>gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
 gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
          Length = 463

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 199/444 (44%), Gaps = 29/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++A  + F A+KG  +D +  +  A   GA   + +  + A+     +P   V 
Sbjct: 39  VHTDTRTLAAGDLFVALKGERFDANSLLPQARAAGAAAAIAHGALEAA----GLPGVEVP 94

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147
           D L AL  LA   R +    ++A+TGS GKTT  +M+   L + K     A  G++NN +
Sbjct: 95  DTLAALGVLAAGWRAQRTLPLVAVTGSNGKTTVTQMIASVLRAWKGDAALATQGNFNNDV 154

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTL R+    +  + ELGM+H GEI +L  + RP +A++      HL     +E +A
Sbjct: 155 GLPLTLLRLRPAHEAAVVELGMNHPGEIAYLAGIARPTVALVNNAQREHLEFMHTVEAVA 214

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                +   L   G       D+F  L +  +   G     +FG    AD +     Q  
Sbjct: 215 RENGSVLAALCAGGVAVFPAADAFTPLWRELA---GAHRCITFGGDA-ADVRCAH-AQWQ 269

Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + +W + VQ    + + +    G H   N L          A +    + L+ F P +GR
Sbjct: 270 DGAWHLRVQTPQGAFDTLLSIAGRHNVTNALAAAACALAAGAPLAAIARGLAAFEPVKGR 329

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + +          ++D+SYNANP S++AAI VL+++     G R+ VLGDM E+G    
Sbjct: 330 SRAFAVRCQGRAIAVVDDSYNANPDSVRAAIDVLAELP----GPRLLVLGDMGEVGGQGP 385

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVD 443
            FH +         I  V    F + AL      S HV    + E M  L   +++ L  
Sbjct: 386 QFHAEAGAHARSRGIEQV----FALGAL------SAHVAGARHFEDMASLIAAVRAQLPG 435

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
              V+VK S      R++  + EE
Sbjct: 436 VGSVLVKGSRFMKMERVVQAIEEE 459


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 167/375 (44%), Gaps = 38/375 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G + DSR       F A++    DGH FI  A+  GA  VV       S+   SI V  
Sbjct: 24  SGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQ--YAPSVIPASITVII 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +D L  L   A A   +     +AITGSVGKT+TK  +   L+S         S+N  +
Sbjct: 82  CNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLASRYSVLRSPRSFNADL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ +T+A +     + + E G  H GEI  L  L  P I ++T +  AHL  F     IA
Sbjct: 142 GLSVTMAELAAQ-QWAVLEFGADHPGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIA 200

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             KA I + L   G   LN DD     +  ++HA  ++        +NA  ++R      
Sbjct: 201 HEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRV------GQNAACEIR------ 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNM-LMTLGIVSILTADVDTAI------------ 314
              W  V    +S +   H I  H  + + L+  G+ S+  A    A+            
Sbjct: 249 ---WGNVTSTVQSTQFTIH-IPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSLAEMR 304

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +AL+   P  G   R+   + +   T+ID+++NA P S+ AA+  L  +      RRIA+
Sbjct: 305 EALADLRPAHG---RFNPLVGRNGATIIDDTFNAAPESVYAALQTLGSLPAR---RRIAI 358

Query: 375 LGDMCEMGELSQSFH 389
           LGDM E+G  S  FH
Sbjct: 359 LGDMAELGAASARFH 373


>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
          Length = 426

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 210/439 (47%), Gaps = 28/439 (6%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           ++S+ +   + F A+KG  +DGHDFI  A++ GA  V+     V S       +F V+  
Sbjct: 11  LNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD-----RIFLVESS 65

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           + AL KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ N   G+PL
Sbjct: 66  VDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           ++       +  I E+  S  G+I  L  +  P IAV+  +  AHL  F   E I   K 
Sbjct: 126 SILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNAHLEFFGTRERIMETKM 185

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           EI +  ++  T    +DDS       +      KT++ FGK ++ D  L+ W      + 
Sbjct: 186 EIIKYSKENATAVTFFDDSDLRREVPRYR----KTLF-FGK-ESGDSVLKGWWYYEGSTI 239

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            E +   +S+  V     ++  Q  N+  +L ++  L   VD  I  L+      G   R
Sbjct: 240 AEFE-AFESLFTVKLSGYWNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPG---R 293

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +     +G   ++D++YNA+P + + +I  L +      G++ AV+G M E+GE S+ FH
Sbjct: 294 FNVREKEGVL-IVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L + L++ +  +V+LS      +K        +  S+  + +   + + + +GDVV+ 
Sbjct: 349 EELGKRLNVLDGVYVFLSEPEAEWIKS----EKIILKSDDPEDIAKDLAARVTEGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEF 468
           K+S +    R++ +  +E 
Sbjct: 405 KASRAVRIERVLEMFEKEL 423


>gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029]
 gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
 gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029]
 gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
          Length = 447

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 30/442 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G +IDS+ + P + FFA+ G   DGH F+ HA   GA   VV+ D      S  + + 
Sbjct: 26  ITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGD--SFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL +         + T++ ITGSVGKTTTKE     LSSI KT+A   SYN+ 
Sbjct: 84  RVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205
           + VPL+L     D D  I E+G+S  G ++ L  +V+P IAVIT I   H  +F  GI+E
Sbjct: 144 LTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQE 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I   K+ I   L+K+    L  D  ++  L++ S     K  +SF     ADF    +K 
Sbjct: 204 ILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPT-AEKFSFSFNDPL-ADF---CYKA 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            S  S + +Q   ++   +     Y  A  N+L+ + +  IL    +  I++L      +
Sbjct: 256 ISGDSVV-IQTPEENY-CLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPEL---K 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+  ++  G   +I+++YNA P +M AA+  L    P   G+ I +LG M E+G  
Sbjct: 311 LPPMRFEHSMRNG-MQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAELGRY 367

Query: 385 SQSFHIDLAEVLS-----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           S+  H  +AE  +     ++ I   W+    VL        S  V +  +   +   ++ 
Sbjct: 368 SEEGHALVAEKAASRGDMIFFIGEKWIPVQSVLK-----SYSCEVSFFSSAQDVKDILKQ 422

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
               GDV+++K S +     L+
Sbjct: 423 VARYGDVILLKGSRALALESLL 444


>gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
 gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
          Length = 478

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 173/361 (47%), Gaps = 24/361 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGSVGKTTTKEML   + + ++ +A  G++NN IG+PLT+   P D +  + ELGM
Sbjct: 116 VVGVTGSVGKTTTKEMLRRGIGATRRVHATAGNHNNLIGLPLTVLSTPEDTEVLVLELGM 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLN 226
           +H GEI  LT + RP +AVIT +  +H+      + IA AKAEI  G+   G+I    + 
Sbjct: 176 NHAGEITRLTSVARPTVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAFGSIEPTLIQ 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEV 283
                +    A   A   + +     +   D    +     E+      +    G S  V
Sbjct: 236 ASAGDYTKFIADKFARPARVVCKTVGATEDDVMSAQKVILDEKGLPTATISASSGWSRTV 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TL 341
                G  +  ++L+ L  V  L  D+D A +A+     ++    R R ++        +
Sbjct: 296 TLEVPGRVVVDDLLLALEAVETLGLDLDAAAEAI-----EQMPATRMRLSVLDATCGAKI 350

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+SYNA+P S  AA+ VL Q+    EGRRIA++G++ E+G   +  H  +   ++  N 
Sbjct: 351 IDDSYNASPNSTAAALDVLMQMP--AEGRRIALIGEIGELGPEEKRLHGYVGAYIAAKNP 408

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-------DGDVVVVKSSNS 454
             V   G    A ++ +  +  + +SE     F  +  +L         GDV++ K+S S
Sbjct: 409 DFVAFVGTG--AAREMVEAARVMGFSEDKIEQFNDVNEALAVLGPVLKQGDVLLAKASRS 466

Query: 455 C 455
            
Sbjct: 467 A 467


>gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
 gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
          Length = 447

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 30/442 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G +IDS+ + P + FFA+ G   DGH F+ HA   GA   VV+ D      S  + + 
Sbjct: 26  ITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGD--SFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD   AL +         + T++ ITGSVGKTTTKE     LSSI KT+A   SYN+ 
Sbjct: 84  RVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205
           + VPL+L     D D  I E+G+S  G ++ L  +V+P IAVIT I   H  +F  GI+E
Sbjct: 144 LTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQE 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I   K+ I   L+K+    L  D  ++  L++ S     K  +SF     ADF    +K 
Sbjct: 204 ILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPT-AEKFSFSFNDPL-ADF---CYKA 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            S  S + +Q   ++   +     Y  A  N+L+ + +  IL    +  I++L      +
Sbjct: 256 ISGDSVV-IQTPEENY-CLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPEL---K 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+  ++  G   +I+++YNA P +M AA+  L    P   G+ I +LG M E+G  
Sbjct: 311 LPPMRFEHSMRNG-MQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAELGRY 367

Query: 385 SQSFHIDLAEVLS-----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           S+  H  +AE  +     ++ I   W+    VL        S  V +  +   +   ++ 
Sbjct: 368 SEEGHALVAEKAASRGDMIFFIGEKWIPVQSVLK-----SYSCEVSFFSSAQDVKDILKQ 422

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
               GDV+++K S +     L+
Sbjct: 423 VARYGDVILLKGSRALALESLL 444


>gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
 gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
          Length = 489

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 177/406 (43%), Gaps = 23/406 (5%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+RS+   + F A++G  +D HDF+  A   GA   +    + AS     +P   V D L
Sbjct: 37  DTRSLRAGDLFVALRGERFDAHDFLPQAQAAGAVAAIAERGLDAS----GMPGIEVPDSL 92

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVP 150
            AL  LA   R      +IA+TGS GKTT  +M+   L +      +A  G++NNHIGVP
Sbjct: 93  LALQALAAGWRAEHLLPVIAVTGSNGKTTVTQMIAAILRAWLGDAAHATAGNFNNHIGVP 152

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL  +       + ELGM+H GEI  L  + +P +A++      H      +E +A   
Sbjct: 153 LTLLALHAGHRAAVVELGMNHPGEIAELARIAQPTVALVNNAQREHQEFMQTVEAVAREN 212

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +   L   G      DD +  + +  +    + T         AD         ++ S
Sbjct: 213 GCVISALPADGVAVFPADDDYTPIWRELAQPRRVLTFALAEAGVAADC-------VAQAS 265

Query: 271 WMEVQLQGK------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           W     Q +      S+++     G H  +N L            +D   + L+ F   +
Sbjct: 266 WAGDHWQARFDTPAGSIDLALGVAGRHNVKNALAACACALAAGCPLDAVQRGLAGFAAVK 325

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +           TL+D+SYNANP S++AAI VL+ +       R  +LGDM E+G+ 
Sbjct: 326 GRSQVSLLDWGGRQVTLVDDSYNANPDSVRAAIEVLAALP----APRWLLLGDMGEVGDQ 381

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
             +FH ++  + +   I H W +G        A   ++H  +  T+
Sbjct: 382 GPAFHAEVGTLAAQRGIDHFWTAGVLCADAARAYADAVHASHDATL 427


>gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 405

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 189/419 (45%), Gaps = 67/419 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T  +L+    G  I  + + F   +SI+S+   P   FFAI      G+D+   A
Sbjct: 1   MNKLNTLEELI----GKKIFSLKEDF--KVSINSKEATPNSVFFAINK----GNDYAKEA 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA ++    ++    G        V+D +  + + A   R  +K  +I ITGS GKT
Sbjct: 51  ESMGAFVIYDKKELDIHNGHY------VEDSVKFMQEFARRYRKNNKFIVIGITGSNGKT 104

Query: 121 TTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T K++L   LS+   + Y   G+YNNHIG+P T+       +  + E+GMS+LGEI  L 
Sbjct: 105 TVKDILHSVLSNKGVRVYKTQGNYNNHIGLPFTILSAKDSDEILLLEMGMSNLGEIDLLG 164

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++ +P  ++IT I  +HL     +E +  AK EI     K   + +N  D F   L    
Sbjct: 165 YIAKPDYSIITNIGQSHLEYLKTMENVFKAKTEIIPHTSK--KVVVNGKDEFLSKLD--- 219

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G+  +                    E   ++  L G      H+ +   +  ++L  
Sbjct: 220 ---GVIKV--------------------ETKDIKTNLLGD-----HNLLNVSIVDSLLKY 251

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G   +   +++            +G     R  + +G +T I+++YNA+P SMKA++  
Sbjct: 252 MGFDDLCYENIELT----------DG-----RFQIVKGKYTYINDAYNASPISMKASLET 296

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            S+I    E  +I  LGDM E+G   + +H DL+ VL   N   ++L G  +  L + L
Sbjct: 297 FSKIC--NESFKIIALGDMLELGSDEKKYHEDLSYVLRETNFDRLFLYGKRMKYLYEKL 353


>gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans]
          Length = 371

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 148/319 (46%), Gaps = 16/319 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVP 150
           AL ++A   R +    +I +TGS GKTT KEM+   L +        A  G++NN IGVP
Sbjct: 2   ALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVP 61

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+       + ELGM+H GEI  L+ + +P + ++      H      +E +A   
Sbjct: 62  LTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQEN 121

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +   L   G      DD+F  L   +S+A   KT+ +FG S +AD +           
Sbjct: 122 GAVLASLPADGVAVFPADDAFTPLW--RSYAAQRKTL-TFGFSADADVRCTYAANVFGND 178

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            M V    +   +     G H  +N L  +     +    +  ++ L  F P  GR +R 
Sbjct: 179 -MSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRLQRK 237

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFH 389
             A       +ID++YNANP S++AAI VL+Q+ SP     RI VLGDM E+G   + +H
Sbjct: 238 LAASGA---LVIDDTYNANPDSVRAAIDVLAQMASP-----RILVLGDMGEVGNDGRQYH 289

Query: 390 IDLAEVLSLYNISHVWLSG 408
            ++        I HV   G
Sbjct: 290 EEIGAYARANGIEHVLALG 308


>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           petrophila RKU-1]
 gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga petrophila RKU-1]
          Length = 426

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 206/439 (46%), Gaps = 28/439 (6%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           ++S+ +   + F A+KG  +DGHDFI  A++ GA  V+     V S       +F V+  
Sbjct: 11  LNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD-----RIFLVESS 65

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           + AL KLA         T++ ITGS GKTTTKE+L   L + +  +   G+ N   G+PL
Sbjct: 66  VDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           ++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   E I   K 
Sbjct: 126 SILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNAHLEFFGTRERIMETKM 185

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           EI +  ++  T    +DD        +      KT++ FGK +  D  L+ W      + 
Sbjct: 186 EIIKHSKENATAVTLFDDPDLR----REVPCYRKTLF-FGK-EGGDSVLKDWWYYEGSTI 239

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            E +       V   G  ++  Q  N+  +L ++  L   VD  I  L+      GR   
Sbjct: 240 AEFEAFDSLFTVKLSGY-WNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPGRFN- 295

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +    ++D++YNA+P + + +I  L +      GRR AV+G M E+GE S+ FH
Sbjct: 296 ---VREKKDVLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L E L++ +  +++LS      +K    + I +  S+  + +   + S + +GDVV+ 
Sbjct: 349 EELGERLNVLDGVYIFLSEPEAEWIK---SKKI-ILKSDDPEKIAKDLASRVTEGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEF 468
           K+S +    +++ +  +E 
Sbjct: 405 KASRAVRIEKVLEMFEKEL 423


>gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
 gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
          Length = 499

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 205/474 (43%), Gaps = 49/474 (10%)

Query: 23  PQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVV 70
           P+  V G +  DSR I   + F A+ G   DGHD+   AV             G   VVV
Sbjct: 23  PEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAAAAVAAGAAAVLAARPVGVPAVVV 82

Query: 71  NTDMVASIGSLSIPVFGVDDVLG-------------ALNKLAVAARLRSKATIIAITGSV 117
                 S+ + S+ +    D  G             ++ +L+ A  L    T++ +TGS 
Sbjct: 83  EPRRC-SVPATSMALAHDADGSGAAVLAALAALARASVERLSAAGGL----TVVGVTGSS 137

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L+ +    A  GS+NN +G P T  R   D  F + E+    +G I  
Sbjct: 138 GKTSTKDLLAAVLAPLGPVVAPPGSFNNELGHPWTALRATADTRFLVLEMSARGVGHIAA 197

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P I V+  +  AHL  F   E IA AK E+ E L   G   LN DD     + A
Sbjct: 198 LAEVAPPRIGVVLNVGTAHLGEFGSREAIARAKGELVEALPADGLAILNADDPNVAAMAA 257

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQN 295
           ++       +   G S +AD++  + +   EQ+     L     S E+     G H   N
Sbjct: 258 RT----AARVVRVGLSGDADYRASEVR-LDEQARATFTLHTPAGSTEIRLGVHGEHQVGN 312

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    + S   AD+ T   ALS       R    R   +    T++++SYNANP S++A
Sbjct: 313 ALAAAAVASECGADLATVAAALSGARAVSERRMDVRTTADG--VTVVNDSYNANPDSVRA 370

Query: 356 AISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
           A+  L  +S  GE   R  AVLG+M E+GE S   H  +  +    ++  + + G     
Sbjct: 371 ALKALVTMSRAGERPRRSWAVLGEMAELGEESVLEHDGIGRLAVRLDVDRLVVVGTGRPS 430

Query: 409 --FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              H  A+ +       V   + +D     +   +  GDVV+VK+S S G + +
Sbjct: 431 RAMHQGAVMEGSWGEESVLVPD-IDAAVALLDREVEPGDVVLVKASKSVGLWEV 483


>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
 gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
          Length = 426

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 28/439 (6%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           ++S+ +   + F A+KG  +DGHDFI  A++ GA  ++     V S       +F V+  
Sbjct: 11  LNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSD-----RIFLVESS 65

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ N   G+PL
Sbjct: 66  VDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           ++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   E I   K 
Sbjct: 126 SILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKM 185

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           EI +  ++  T    +DD        +      KT++ FGK +  D  L+ W      + 
Sbjct: 186 EIIKHSKENATAVTLFDDPDLR----REVPCYRKTLF-FGK-EGGDSVLKDWWYYEGSTI 239

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            E +       V   G  ++  Q  N+  +L ++  L   VD  I  L+      G   R
Sbjct: 240 AEFEAFDSLFTVKLSGY-WNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPG---R 293

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +     +G   ++D++YNA+P + + +I  L +      GRR AV+G M E+GE S+ FH
Sbjct: 294 FNVREKKGVL-IVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L E L++ +  +++LS      +K    + I +  S+  + +   + S + +GDVV+ 
Sbjct: 349 EELGERLNVLDGVYIFLSEPEAEWIK---SKKI-ILKSDDPEKIAKDLASRVTEGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEF 468
           K+S +    +++ +  +E 
Sbjct: 405 KASRAVRIEKVLEMFEKEL 423


>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum MopnTet14]
          Length = 450

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 207/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV  D      S  + +F
Sbjct: 25  VTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGP--SYGLQLF 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   +L +         +  +I ITGSVGKTTTK      LSS  K +A   SYN+ 
Sbjct: 83  HVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKVFASPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S  G ++ L  ++ P I VIT I   H  NF   G +
Sbjct: 143 LTLPLSILMADGDEDFLLLEMGVSEPGNMKNLLEVIEPTIGVITHIDVQHAMNFLDKGAK 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263
            I   K+ +   LE+ G   L  D S+F     K+        +SF   ++ +DF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLLPKDSSWFPFFMKKNST---AEQFSFSMNNETSDFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD-------TAIKA 316
              S+   +        + VV      +M  N L+ + +  +    +D       + I  
Sbjct: 257 H--SDGVLISAPDGDIELPVVFPYSPAYM--NFLVAVALAWLTNVPMDRLEQVSPSLILP 312

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              F  +E  G R           +I+++YNA+P SM AA+  +  + P G G+R+ +LG
Sbjct: 313 SMRFEQQEYNGIR-----------VINDAYNASPDSMLAALDAVP-VPPEG-GKRVFILG 359

Query: 377 DMCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGL 433
            M E+G+ S   H+ +A   V   + +  +    F V   ++DA   +  + +  +++ +
Sbjct: 360 HMAELGKYSNECHVAVARKAVTKAHVVVFIGEKWFPVRDVVRDA---NCQIEFYGSVNEI 416

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              ++S +  GDVV++K S S     L+
Sbjct: 417 MHVVKSLVRQGDVVLLKGSRSLELETLL 444


>gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           kansasii ATCC 12478]
          Length = 524

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 204/491 (41%), Gaps = 74/491 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVVNTDMVASI 78
           +  DSR+I P   F A+ G H DGHD+   A              G   +VV  +   + 
Sbjct: 34  VEFDSRAIGPGGLFLALPGAHVDGHDYAASAAAAGAVAVLAARPVGVPAIVVTPERSLAE 93

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIAL 130
           G+L+  +    D  GA    A+A   ++ A        TII ITGS GKT+TK+++   L
Sbjct: 94  GALAGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVL 153

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +    A  GS+NN +G P T+ R   D D+ I E+   H G I  L  +  P I V+ 
Sbjct: 154 QPLGVVVAPPGSFNNELGHPWTVLRAGRDTDYLILEMSARHPGNIAALAQIATPAIGVVL 213

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL  F   E IA  K+E+ + + ++G + LN DD     +   + A     +   
Sbjct: 214 NVGTAHLGEFGSREAIARTKSELPQAVPQSGVVILNADDPAVAAMAEVTAA----RVVRV 269

Query: 251 GKSKNADFQLRKWK-QCSEQSWMEVQLQ---GKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
            +    D     W    S       Q     G +   V  G+ G H   N L    +   
Sbjct: 270 SRGSTGDV----WAGPVSLDELARPQFTVHAGATQAEVRLGVYGDHQVSNALCAAAVALE 325

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A +D    AL    P      R +        T+ID++YNANP SM A +  L+ I+ 
Sbjct: 326 CGATLDQVATALGGAGPVS--RHRMQVTTRADGVTVIDDAYNANPDSMGAGLQALAWIAR 383

Query: 366 HGEG---------RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            G G         R  AVLG+M E+G  + + H  +  +    ++S + + G        
Sbjct: 384 GGSGAGSDLAAKRRSWAVLGEMAELGADAIAEHDRVGRLAVRLDVSRLVVVGTG------ 437

Query: 417 ALPRSIH-VHYSETMDGLF---------------------LFIQSSLVDGDVVVVKSSNS 454
              RS+  +H+   ++G +                       +++ +  GDV+++K+SNS
Sbjct: 438 ---RSVSAMHHGAVLEGAWGSWGAGADRGTVNVADADAALELLRAEVQPGDVILIKASNS 494

Query: 455 CGFYRLINLLL 465
            G   L + L+
Sbjct: 495 AGLGALADALV 505


>gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
 gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
          Length = 426

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 185/383 (48%), Gaps = 38/383 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR I     FFAI     +G+ +I   +++GA LV+ +             V  V+
Sbjct: 23  VVMDSRKIEKDSLFFAIN----NGNKYIDEVLERGATLVIAD-----DYSGDDSRVIVVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + A+  LA   R      +IAITGS GKTTTK+M+   LS   +     G+YNNHIG+
Sbjct: 74  DTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQKYRCKKTEGNYNNHIGL 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+ ++    +  + E+GMS  GEI  L  + +P  A+IT I  +HL      E +  A
Sbjct: 134 PFTILQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKTRENVFKA 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI + +     I    DD + + L       GI    + G  KN   ++  +K   E 
Sbjct: 194 KGEIIKYVVSENLIIFG-DDYYLKNLS------GI----TVGYEKNCKKRIENFKDTDE- 241

Query: 270 SWMEVQLQGKSMEV----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +E  L+G + ++     H+ I   MA  + M+L + S    ++      L++  P   
Sbjct: 242 -GIEFSLEGNNYKINLNGKHNCINGAMAVVVGMSLDLTS---EEIQKGFDNLNL-TP--- 293

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R++  + +G    I+++YNA+P SM+ ++    ++  + +  +IAVLGDM E+G+  
Sbjct: 294 --MRFQKIV-KGETLYINDAYNASPISMRYSLETFDKL--YNDRTKIAVLGDMLELGDKE 348

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
             FH ++ +      +  +++ G
Sbjct: 349 IEFHREIIKKALDIKVDRIYIYG 371


>gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria AMMD]
 gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia ambifaria AMMD]
          Length = 468

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF L  V      
Sbjct: 7   GEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
             +   + A    L++PV    +   AL  LA   R R    ++A+TGS GKTT KEM+ 
Sbjct: 66  AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAATGNPI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  + Q+       E   + +     ++ V    +G H A+N L       
Sbjct: 243 LDFALHDGERQVEAQVTGRLHGGE---LAIDTPSGAVTVRLRALGEHNARNALAAAAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
               ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI VL +Q
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +P     R+ V+GDM E+G+   +FH ++
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384


>gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
 gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
          Length = 468

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%)

Query: 16  GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           G +  ++P   V+G        +S DSR++ P + F A+KG  +D HDF L  V      
Sbjct: 7   GEAARLIPGAAVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
             +   + A    L++PV    +   AL  LA   R R    ++A+TGS GKTT KEM+ 
Sbjct: 66  AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122

Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               A        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  L  P
Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++      H    + +E +A   A +   L   G      DD++  + +  +    I
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYAGIWRVAATGNPI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    +  + Q+       E   + +     ++ V    +G H A+N L       
Sbjct: 243 LDFALHDAERQVEAQVTGRLHGGE---LAIDTPSGAVTVRLRALGEHNARNALAAAAAAL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362
               ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI VL +Q
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +P     R+ V+GDM E+G+   +FH ++
Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384


>gi|83596046|gb|ABC25404.1| UDP-MurNAc-pentapeptide synthetase [uncultured marine bacterium
           Ant39E11]
          Length = 364

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 181/391 (46%), Gaps = 49/391 (12%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V+ V + L +L +LA A R+    T+I +TGS GKTT KE+    LS     +A  G++N
Sbjct: 12  VYKVVNALTSLQELAHAHRMNWGGTLIGLTGSNGKTTAKELFRSVLSQSFNVHATDGNFN 71

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+PLTL  +    +  + E+G +H GEI  LT +  P I  IT    AHL  F G++
Sbjct: 72  NHIGLPLTLVGLKKSHEVAVIEMGANHRGEIASLTAIAAPDIGYITNFGQAHLEGFGGVD 131

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +   K E+++ L   G   L  D    ++  A ++ L                      
Sbjct: 132 GVIQGKIELYQWLTSHGKPSLVNDSDPLQIEHAGNNKL---------------------- 169

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV---------DTAI- 314
                S  +V  Q K  + VH  IG   AQ+ L+       L A V         D AI 
Sbjct: 170 ----PSSKDVVCQSKD-QGVHVTIGDTRAQSHLVGDFHSGSLVASVNLGRYMGMADEAIA 224

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K +  + P   RG+      N+ F     ++YNANP+SM+A++  +  + P  E   + +
Sbjct: 225 KGIEAYIPSNNRGQWLTTDSNRIFL----DAYNANPSSMEASLLAVHALHP--ELPHVYI 278

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGL 433
            GD+ EMG   +S H  + +++   N+  V L G   LA  K   PR++ V +  T D L
Sbjct: 279 AGDIFEMGSHEKSAHQSMVDLMQTLNLKTVHLVG---LAFGKAQAPRTM-VKHDNTKDAL 334

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             F +S+ V G +V +K+S       L+  L
Sbjct: 335 AYF-KSNPVRGAMVWIKASRGMALEGLLEAL 364


>gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
 gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
          Length = 448

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 212/444 (47%), Gaps = 31/444 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQAAQAGAVAAVVSKDYCGD--SFGLDLV 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +         + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 84  VVQDTTEALKEAGENQGHLFQGTIVGITGSIGKTTTKTFAKTFLSSVYRVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S  G +R L  +V P I+VIT IA  H  NF   G+ 
Sbjct: 144 LTVPLSLLMADGDEDFIILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINFPDQGVR 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K+ I +    T  I L   DS +     K      K  ++F  ++ ADF    +K
Sbjct: 204 GIAEEKSHILQ----TSRIQLLPKDSPWYSHFIKQSPSSEKFSFAF-YNETADFY---YK 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              + S +    +G     V     Y  A  N+L++  +  +L   VD  I + S     
Sbjct: 256 AIQKDSVIISTPEGDVDFAV--SFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLP 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R+  ++  G   +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G 
Sbjct: 314 P---MRFELSMRNG-IQVINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGN 367

Query: 384 LSQSFHIDLA-EVLSLYN----ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            S+  H  +A + LS  N    I   WLS  H+L        S  V +  +   +   ++
Sbjct: 368 YSEEGHAIVANKALSKANIIFFIGEKWLSSQHLLK-----SSSCEVSFYPSAQSVEEILK 422

Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462
           S +  GD+V++K S +     L++
Sbjct: 423 SVVQQGDIVLLKGSRALALESLLS 446


>gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 503

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 198/451 (43%), Gaps = 35/451 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++   + F A++G  +D ++F+  A   GA   + +   + + G   +P   V 
Sbjct: 39  VHTDTRTLQAGDLFVALRGERFDANEFLAQARAGGAAAALAHPGRLEAAG---LPGIEVP 95

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147
           D L AL  LA   R R    +I +TGS GKTT  +M    L + K    +A  G++NN I
Sbjct: 96  DTLAALGALAAGWRARLDLPLIGVTGSNGKTTVTQMTAAVLRAWKGDAAFATQGNFNNDI 155

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL L R+    +  + ELGM+H GEI  L  + +P +A++      HL     +  +A
Sbjct: 156 GVPLMLLRLRAAHEAAVIELGMNHPGEIAVLAGIAQPTVALVNNAQREHLEFMHTVRAVA 215

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                +   L   G      DD++  L +  +   G +   +FG    +   +R    C+
Sbjct: 216 EENGSVISALPAGGVAVFPADDAYAPLWRGLA---GARRCLAFGMEPGSAAGVR----CT 268

Query: 268 EQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              W        ++  L G    V     G H   N L          A +D   + L+ 
Sbjct: 269 RAHWEAGAWNVHIDTPLGGFDGTV--RIAGRHNVANALAATACALAAGAPLDAIARGLAA 326

Query: 320 FHPKEGRGKRYRCALNQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           F P +GR + +  A+ Q        T +D++YNANP SM AAI VL ++     G R+ V
Sbjct: 327 FEPVKGRSRAFTAAVPQPGGGSRRITAVDDTYNANPDSMHAAIDVLGELP----GPRLLV 382

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMDGL 433
           +GDM E+G+    FH +         I  ++ L    + A++   P++ H    + M  L
Sbjct: 383 MGDMGEVGDQGPQFHAEAGSHARDRGIERLFALGALGIHAVQAFGPQARHF---DDMASL 439

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              ++ +      V+VK S      +++  L
Sbjct: 440 LAAVREAAPSAGSVLVKGSRFMKMEQVVQAL 470


>gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 956

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 204/450 (45%), Gaps = 32/450 (7%)

Query: 23  PQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           P G+      N +SIDSRSI P   F AIKG  YDGH ++   ++      +       +
Sbjct: 527 PNGYQETYSYNYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLN 586

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             S     + V++ L  +  +         A  IA+TGS GKTT KE++   L S     
Sbjct: 587 QFSEENSYYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVL 646

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             + + NN IG+  T+ R+  +  + IFELG +H GEI  L  +  P I +I  I P+HL
Sbjct: 647 KTLANENNIIGLCKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGIILNIGPSHL 706

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   E +   K  +F+            DD  F+ L  +    GI    S G ++N+D
Sbjct: 707 EYFGDEEGVFREKITLFK--RPLALRLYPGDDFRFDYLANE----GI----SIGYNENSD 756

Query: 258 FQLRKWKQCSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +++ + K C++ +   ++   L        H+ I    A  + + LGI      D +   
Sbjct: 757 YRITRHK-CNKDNQSFYLNEDLWFLPYGAPHYAINSAFAIVLGLKLGI------DKEKMQ 809

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL+     E R +  +    +G   LI + YNANP SM+ A+    +++P  E    A+
Sbjct: 810 TALNKPIQLELRNQVEK----RGTGLLILDCYNANPYSMQKALEYWQELNP--EQPHYAI 863

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+GE S  +H  ++ +L+      ++  G +           I  HY+   + + 
Sbjct: 864 LGDMLELGESSILYHQMISAMLAEMRYEKLYTVGNYSRIYHPEKESPI-FHYNTVEELIA 922

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +SL +  +++VK S++    R+I +L
Sbjct: 923 DRKLNSLPENAIILVKGSHAIQLERVIPIL 952



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 167/401 (41%), Gaps = 50/401 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           ++  + +L A+Q HS+ +        + +   +  D+R I P + F  I+G ++DGH+FI
Sbjct: 6   IFVINRILYALQQHSLLVETANLAKLENWQGKVQTDNRKIKPGDIFVCIQGANFDGHNFI 65

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
             A++KGA ++V        I    IP   V D   A   +A    L  K   T+I ITG
Sbjct: 66  NSALEKGAAIIVCR-----EINKRDIPYIKVKDTRKAAAVIARTVMLPQKIPYTLIGITG 120

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVD--------------- 159
           + GKTTT  +L  AL ++      IG+   +I G      R   D               
Sbjct: 121 TNGKTTTSLLLYEALRNLGFRCGWIGTLGYYIEGKAFPSERTTPDIIELNEIFGQMIEAK 180

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           VD+ + E+    L   R   + V+    + + +   HL     +E    AK   FE   K
Sbjct: 181 VDYVVMEVSSHSLSLDRI--YGVKFDYCLFSNLGRDHLDFHQTLENYGKAKMSFFEQGAK 238

Query: 220 TGTI-FLNYDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G+I  +N  D+F     ++LK K        +YS G   +A+FQ    K     S  ++
Sbjct: 239 DGSISVINTADAFGVQIKDMLKEKQ-----AKVYSLG-GNDAEFQYSDIKTDINTSSFKL 292

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +   + V    IG    QN+ +T+  +  L    +    +L    P +GR +R     
Sbjct: 293 IAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSPEAIHNSLKDIPPVQGRLERVENNF 352

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           N G F  ID  Y   P ++   +  +  + PH   +RI  L
Sbjct: 353 NIGIF--ID--YAHTPEAIDNVLKAVEDL-PH---KRILCL 385


>gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
 gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
          Length = 478

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 183/401 (45%), Gaps = 33/401 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88
           +  DSR +AP + F  I+G  +DGHDF    V++GA +++   D       S  + +  V
Sbjct: 29  VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAERDPFNGECPSADVTIMVV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D + AL +LA   R+RSKA ++ +TG+ GKTT KE+L   L     T     + NN IG
Sbjct: 89  GDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQIG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PL++     +  F + E G+S   ++  L  ++RP I ++  +   H++   G   +A 
Sbjct: 149 LPLSMLEATGNESFWVMEAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGL-GDRGVAY 207

Query: 209 AKAEIFEGLEKTGT--IFLNYDD---------SFFELLKAKSHALGIKTIYS--FGKSKN 255
            K+ +   L + GT  +  +YDD            +   A    +G +  Y      +  
Sbjct: 208 YKSRLLAHLAEGGTGLVCADYDDLVREARSVCRRLQFFSASGRGVGYRAAYDGPVADAAG 267

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI--LTADVDTA 313
           +D  +R            V L G   EVV    G   A+N+        +  L+ +   A
Sbjct: 268 SDGGVR--------GRYRVWLDGSVHEVVAPFRGAFGAENVAAVAAAAHLCGLSGEEIAA 319

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             A +V  P++    R+ CA   G F  ID++YNANP S    +  +++++  G    + 
Sbjct: 320 GLAEAVL-PRQ----RFACA-TVGGFVCIDDTYNANPLSSARMVEAVTEMAAGGP--LVF 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           VLG+M E+GE +   H  L   L+      V+  G +  A+
Sbjct: 372 VLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAV 412


>gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA2]
 gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL044PA1]
 gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA3]
 gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp.
           P08]
          Length = 485

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 170/388 (43%), Gaps = 35/388 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + ID+R + P   + A+ G   DGHDF   A   GA  V+      A +     P   VD
Sbjct: 28  VVIDTRKVTPGALYIALPGARVDGHDFTQAAQDAGAAAVLTTRSTDAQV-----PHLIVD 82

Query: 90  DVLGALNKLA--VAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D    L++LA  V A  R +  + IA+TGS GKT+TK+ML   L +   T A +GS+NN 
Sbjct: 83  DGRAGLSRLARHVVATERERGMLTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG PLT  R   D  F + E+G   LG I +LT +V P +A++  +  AHL  F   E I
Sbjct: 143 IGAPLTACRSNEDTSFLVSEMGARGLGHISWLTSIVPPDVAMVLNVGIAHLGEFGSREVI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI   L   G   LN  D+    + +++H   I         +  D ++  W + 
Sbjct: 203 AQAKGEIVGALAPDGWAVLNAADNLIAGMASRTHGH-IAWFSPDADHRRPDAEIEAWAES 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-----------------AD 309
                 ++     ++   + G  +    + L T+G   +                    D
Sbjct: 262 IHAD--DLDRHSFTLAARYGGTTWRSPVS-LTTMGAHQVANAVAATAAALAALAMNDGTD 318

Query: 310 VDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----- 363
             T I+          R   R +         L+++ YNANP SM A+++ +  +     
Sbjct: 319 EQTVIQIAGALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLAAMGHVLAARR 378

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHID 391
           +   + R +AVLGDM E+G  S   + +
Sbjct: 379 ARDPQTRGVAVLGDMLELGADSARLNAE 406


>gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
 gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
          Length = 470

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 208/475 (43%), Gaps = 49/475 (10%)

Query: 21  IVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           ++P   V+G        +S DSR+  P + F A+KG  +D HDF+          V+   
Sbjct: 11  VIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAHNVSAVLATR 70

Query: 73  DMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
               +  +  +P   V  D   AL  LA   R R    ++A+TGS GKTT KEM++   +
Sbjct: 71  ----TPDNFEVPALRVTGDTRTALGALANGWRQRFSLPLVAVTGSNGKTTVKEMISSIFA 126

Query: 132 SI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +        A  G++NN +G+PLTL R+       + ELGM+H GE   L  +  P +AV
Sbjct: 127 AAVGEASRLATAGNFNNDVGLPLTLFRLNETHKLAVVELGMNHPGETALLGKIAEPTVAV 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +      H    + +E +A   A +   L+  G      +D++           GI  + 
Sbjct: 187 VNNAQREHQEFMATVEAVALEHAAVIHALKPEGVAVFPANDAY----------AGIWRVA 236

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---------EVVHHGIGYHMAQNMLMT 299
           + G ++  DF L   +  +E + ++  L+G  +         +V    +G H A N L  
Sbjct: 237 ATG-NRIIDFALNTAEHTTEAA-VKGSLEGSELSIDTAEGHVDVTLQVLGAHNAHNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358
                     +D   + L  F   +GR +  R  L      T+ID++YNANP SM AAI 
Sbjct: 295 TAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNANPDSMLAAID 354

Query: 359 VL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           VL ++ SP     R+ V+GDM E+G+    FH ++        I  ++  G    A +DA
Sbjct: 355 VLAARPSP-----RVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALG---EASRDA 406

Query: 418 LPR-SIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                   H+ + ++ L   + Q++       +VK S      R+++ +    PA
Sbjct: 407 CAAYGDEAHHCDDVEALVAHLKQAAYGAAATYLVKGSRFMKMERVVDAVTSPQPA 461


>gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL N1-067]
          Length = 316

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 2/206 (0%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I P + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 28  ITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA+      +  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 86  LVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      +EI
Sbjct: 146 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF 232
           A AK EI  GL  +G +   Y+++  
Sbjct: 206 AKAKLEITAGLNPSGILIYPYEETLL 231


>gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
 gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
          Length = 501

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 203/479 (42%), Gaps = 56/479 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFG 87
           +  DSR++     F A+ G   DGHDF   AV  G  A L      + A +     P  G
Sbjct: 31  VEFDSRAVTAGGLFLALPGARSDGHDFAATAVASGAVAVLAARPVGVPAVVVDPVAPQHG 90

Query: 88  VDDVLGALNKLAVAARLRSKA------------------TIIAITGSVGKTTTKEMLTIA 129
                G L   A  +     A                  TI+ ITGS GKT+TK+++   
Sbjct: 91  AGGTAGVLEHDADGSGAAVLAALARLAAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAV 150

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+ + +  A  GS+NN +G P T+ R     D+ + E+   H G I  L  +  P I  +
Sbjct: 151 LAPLGEVIAPPGSFNNELGHPWTVLRATESTDYLVLEMSARHPGNIAALARIAPPSIGAV 210

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +  AHL  F   E IA+ K+E+ + + ++G + LN DD     +  K+ A     +  
Sbjct: 211 LNVGTAHLGEFGSREAIAATKSELPQAVPQSGVVILNADDPVVAAMADKTAA----RVVR 266

Query: 250 FGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            G+S +A     +    +     +    +   G+ + V     G H   N L+   +   
Sbjct: 267 VGRSADARTLDVRADGVTLDPLARPAFTLHAGGEQVPVTLAVHGDHQVSNALVAAAVALE 326

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364
             A +     AL+   P      R + +      T+I+++YNANP SM A +  L+ +S 
Sbjct: 327 CGATLTQVAGALAAAGPVS--RHRMQVSTRSDGVTVINDAYNANPDSMTAGLKALAWMSR 384

Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             P G  R  AVLG+M E+GE + + H  +  +    ++S + + G          P S 
Sbjct: 385 QNPEGS-RSFAVLGEMAELGEDTITEHDRIGRLAVRLDVSRLVVVG-------SGRPMSA 436

Query: 423 HVHYSETMDGLF--------------LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +H +  M+G +                ++  L  GDVV+VK+SNS G   L + L+ E
Sbjct: 437 MLHGA-VMEGSWGSEATPVADADAALALLRDELRPGDVVLVKASNSAGLGALADALVSE 494


>gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium gilvum PYR-GCK]
          Length = 504

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 203/479 (42%), Gaps = 56/479 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFG 87
           +  DSR++     F A+ G   DGHDF   AV  G  A L      + A +     P  G
Sbjct: 34  VEFDSRAVTAGGLFLALPGARSDGHDFAATAVASGAVAVLAARPVGVPAVVVDPVAPQHG 93

Query: 88  VDDVLGALNKLAVAARLRSKA------------------TIIAITGSVGKTTTKEMLTIA 129
                G L   A  +     A                  TI+ ITGS GKT+TK+++   
Sbjct: 94  AGGTAGVLEHDADGSGAAVLAALARLAAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAV 153

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+ + +  A  GS+NN +G P T+ R     D+ + E+   H G I  L  +  P I  +
Sbjct: 154 LAPLGEVIAPPGSFNNELGHPWTVLRATESTDYLVLEMSARHPGNIAALARIAPPSIGAV 213

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +  AHL  F   E IA+ K+E+ + + ++G + LN DD     +  K+ A     +  
Sbjct: 214 LNVGTAHLGEFGSREAIAATKSELPQAVPQSGVVILNADDPVVAAMADKTAA----RVVR 269

Query: 250 FGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            G+S +A     +    +     +    +   G+ + V     G H   N L+   +   
Sbjct: 270 VGRSADARTLDVRADGVTLDPLARPAFTLHAGGEQVPVTLAVHGDHQVSNALVAAAVALE 329

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364
             A +     AL+   P      R + +      T+I+++YNANP SM A +  L+ +S 
Sbjct: 330 CGATLTQVAGALAAAGPVS--RHRMQVSTRSDGVTVINDAYNANPDSMTAGLKALAWMSR 387

Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             P G  R  AVLG+M E+GE + + H  +  +    ++S + + G          P S 
Sbjct: 388 QNPEGS-RSFAVLGEMAELGEDTITEHDRIGRLAVRLDVSRLVVVG-------SGRPMSA 439

Query: 423 HVHYSETMDGLF--------------LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +H +  M+G +                ++  L  GDVV+VK+SNS G   L + L+ E
Sbjct: 440 MLHGA-VMEGSWGSEATPVADADAALALLRDELRPGDVVLVKASNSAGLGALADALVSE 497


>gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 487

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 192/464 (41%), Gaps = 36/464 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-----------QKGAGLVVVNTDMVASI 78
           +  DSR +     F A+ G   DGHDF   AV           +  A  V+V        
Sbjct: 30  VEFDSRKVTDGGLFVALPGERADGHDFAASAVAAGAAGVLAAREVDAPAVIVPPLPPGQA 89

Query: 79  GSLSIPVFGVDDVLGALNKLA-------VAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
              S+ + G  D  GA    A       V  RL     T++ +TGS GKT+TK+++   L
Sbjct: 90  HERSVALAGDTDGSGAAVLAALAALARHVVTRLSETGLTVVGVTGSSGKTSTKDLIAQLL 149

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +  T A  GS+NN +G P T  R        + EL     G I  L  +  P I V+ 
Sbjct: 150 EPLGPTVAPPGSFNNELGHPWTALRADRKTRHLVLELSARGPGHIAELAAVAPPRIGVVL 209

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH+  F   E IA  K E+ E L   G   LN DD F   +  ++ A     +   
Sbjct: 210 NVGSAHVGEFGSQEGIARTKGELVEALPAEGVAVLNVDDPFVAEMAQRTSA----RVVGV 265

Query: 251 GKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G+S  AD +    +     ++  ++   G+  EV    +G H   N L    +   L   
Sbjct: 266 GESPKADVRAENVRLDEHARASFDLVAGGERAEVRLQLVGEHHVGNALAAAAVALELGMP 325

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +      LS    +  R  R          T++++SYNANP SM+AA+  L+ ++     
Sbjct: 326 LSEVAAGLSAATRRSER--RMEVTTRSDGVTVLNDSYNANPESMRAALKTLASMT--SSR 381

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R  AVLG M E+G  S S H ++  +    NI+ + + G    A+      S    + E 
Sbjct: 382 RSWAVLGVMSELGADSVSAHDEIGRLAVRLNINRLVVVGEQAAAMHRGA--SHEGSWGEE 439

Query: 430 ------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  D     ++  L   DVV+VK+S     +R+ + LLEE
Sbjct: 440 SVLVPDTDAAVALLREQLRPNDVVLVKASKVAELWRVADALLEE 483


>gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
 gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
          Length = 422

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 201/452 (44%), Gaps = 57/452 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFGV 88
           +DSR + P   F AIKG   DGH +   A+ KGA  VV    +        IP   +  V
Sbjct: 9   VDSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKL------QHIPEEKLITV 62

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D +  L   A     +    +I ITGS GKTTTKE+L   L    + +   G+ N  IG
Sbjct: 63  NDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGK-DRAFRNPGNLNTEIG 121

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PL++        F I E+ M+  G+I  L  +  PH+A++  +  AH       E I  
Sbjct: 122 LPLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILLNVGTAHRGIAGNQEMILR 181

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-- 266
            K ++ E ++K GT  + YD    +        + +K + +FG  K  D+QL  +  C  
Sbjct: 182 GKLQLIENMQKNGTAIVLYDKKLLD-------RISLKPMVTFG-YKKGDYQLVDY--CYI 231

Query: 267 --SEQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             S +++ +    QL      + + G       N+   L  + IL  D +  I  L  F 
Sbjct: 232 DFSTKAFYKTPREQLIFNLKSIWNAG----QLTNISAVLAALDILGIDCNKNI--LENFT 285

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  GR +   C    G + ++D++YNA+  S + A+  + ++      R  AV+G + E 
Sbjct: 286 PVAGRFRVMNC---NGIY-VVDDTYNASIESFETAVETIKKLGK----RSFAVVGSIKEQ 337

Query: 382 GELSQSFHIDLAEVLS------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G+ S   H  L E+L       +YN+ +            + +  S  +  S +   +  
Sbjct: 338 GKYSIETHRKLGEILEKLDGVVVYNVDNEI----------EIMNCSKKIFASNSATEISD 387

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           F++  L+ GDVV+ K+S S    +++ +  EE
Sbjct: 388 FLKRILIPGDVVLFKASRSVQIEKVLQIYTEE 419


>gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL S4-171]
          Length = 309

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I P + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 28  ITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA+      +  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 86  LVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      +EI
Sbjct: 146 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEI 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           A AK EI  GL  +G +   Y+++        S   G     +FGKS  ++
Sbjct: 206 AKAKLEITAGLNPSGILIYPYEETLL-----LSQIDGDFRQLTFGKSTESE 251


>gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
 gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
          Length = 430

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 34/377 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----------DM 74
           GF N ++ DSR++ P   F  ++G   DGH +I  A+Q+GA  V+ +            +
Sbjct: 25  GF-NSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHI 83

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSI 133
           +            V+  L AL   A A   R    + I +TGS GKTTTKE+L    +  
Sbjct: 84  LVLCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASIFAQK 143

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +T    G+ N+  G+PL++  +  + + GIFELGM+  GEI  L  +++P+IAVIT I 
Sbjct: 144 YRTVKNEGNLNSETGLPLSVFTITKEHEVGIFELGMNRKGEIAELAAVLKPNIAVITNIG 203

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AH+      + IA  K  IF   ++T   F+   D + E L+   H      I ++   
Sbjct: 204 TAHIGMLGSKDAIAQEKKHIFSCFDETSVGFVPAQDKYAEFLQDVPHG----KIVTYSAD 259

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDT 312
            +A + L         S  E++ +G   E +H  + G H   N    + +       + +
Sbjct: 260 PDA-YTLEGL------SGAEIRYKG---ETIHLPLPGKHNVHNAFAAIAVAEYCKIPLQS 309

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +       GR +  R     G  T + + YNANP SM A +++ + I     G++I
Sbjct: 310 IKAGIEQMQALFGRSQIIR-----GPVTYLLDCYNANPDSMNAGLALCANIRV--SGKKI 362

Query: 373 AVLGDMCEMGELSQSFH 389
            VL  M E+G  S   H
Sbjct: 363 YVLASMKELGFESHEAH 379


>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 521

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 183/414 (44%), Gaps = 34/414 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+T  ++     G      P   V+GI+ DSR + P + F A+ G   DGHDF   A
Sbjct: 1   MTQLFTAAEIAALTGGRLAAGDPNAGVSGIAWDSRLVRPGDCFVALAGERADGHDFAAQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  V+    + A   ++   V   D +LG                ++ ITGSVGKT
Sbjct: 61  AARGAACVLAARPVPAGDAAV---VVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM    L+   + +   G+ N+ +G+P +LA +  + +  + E+GM   GEI +L  
Sbjct: 118 TTKEMTAAVLAERFRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLAS 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP + V+T +   HL      E IA AK+E+   L   G   LN DD     + A + 
Sbjct: 178 IARPQVGVVTNVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAAATP 237

Query: 241 A----LGIK-------------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           A     G+                 + G++     ++  W   +E +  +  +  +   V
Sbjct: 238 ARVWFYGLTAREAADDAAAAPVATGTAGEAGTPGGRVVGWV-TAENARPDGPMAQRFRLV 296

Query: 284 VHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            H G         G H   N L    +      D++   + LS+F      G R R  + 
Sbjct: 297 CHLGEADVRLPAPGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFR---NAGNRLRL-VE 352

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            G   ++D++YNA PAS+ AA+ V+   +   EGR +AVLGDM E+G L    H
Sbjct: 353 AGGVRILDDTYNAAPASVIAALEVMRGFA-GPEGRCVAVLGDMYELGALEVEGH 405


>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 510

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 209/488 (42%), Gaps = 49/488 (10%)

Query: 4   LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L + H     +QG + + + PQ     + ID+  + P   F  + G H DG D    A  
Sbjct: 28  LVSAHGTPCRLQGSAAVPVGPQ-----VVIDTHQVTPGALFVGLPGEHVDGADLAPQAAG 82

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGK 119
            GA   +V  D+ A +     P   V+D    L+ LA   VA  L       AITGS GK
Sbjct: 83  AGAAAALVGHDVTAGL-----PRLIVEDAGRGLSALATGVVATELARGLITFAITGSSGK 137

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++L   L +   T +  G++NN IGVPL+   +     + + E+G    G++  L 
Sbjct: 138 TSTKDLLAQVLEATGPTVSPAGNHNNEIGVPLSACGVDATTRYLVSEMGSRGKGDVATLC 197

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V P I+ +  +  AHL  F   + IA AK EI E L   G   LN DD     +  ++
Sbjct: 198 RIVPPRISTVLNVGTAHLGEFGSQDAIAEAKGEIVEALPADGWAVLNADDPRVAAMAPRT 257

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------I 288
           +A  I    + G ++ +D +L  +      +   +Q     + V   G           I
Sbjct: 258 NAH-IARWTTTGAARASDAEL--FVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLI 314

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESY 346
           G H   N      +      D      +LS    +       R  L++  G   LI++SY
Sbjct: 315 GAHQVLNATAAATMALAAGLDPAAVAASLSTATTR----SPLRMELHELRGGIALINDSY 370

Query: 347 NANPASMKAAISVLSQI--SPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           NANP SM AA+  ++ +  + H E    R IA+LG+M E+G  S   H  +A + +   I
Sbjct: 371 NANPDSMAAALHAVAAMGAARHDEYPRARTIAILGEMGELGTQSARLHARVARLAADLGI 430

Query: 402 SHVWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             V   G H      A ++   ++      E  D L       LV GD+V+VK+S S   
Sbjct: 431 DIVIALGDHAGTMAQAAREGGAQARAARKEEVADSL------ELVPGDIVLVKASRSMAL 484

Query: 458 YRLINLLL 465
             +   LL
Sbjct: 485 EDITAQLL 492


>gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 497

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 214/464 (46%), Gaps = 37/464 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMV------ASIG 79
           V  +  DSR       F AI G   DGH  +  A   GA   +V N + V      A   
Sbjct: 38  VTDVVTDSRQAEEGSLFVAIVGERTDGHRHVPQAAAAGARAALVSNVEAVRAAMAEAGRD 97

Query: 80  SLSIPVFGVDDVLGALNKLAVA--ARLRSKAT-------IIAITGSVGKTTTKEMLTIAL 130
             S+P+  V D + AL  LA +  A+LR +A+       +IA+TGSVGKTTTK++    L
Sbjct: 98  PESLPLVIVPDTVAALGGLARSHLAQLREQASSRGETLSVIAMTGSVGKTTTKDLTRQIL 157

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++   T A + S+NN IG+PLT+ R      + + E+G S  G I +LT +     A + 
Sbjct: 158 AAQAPTVAPVASFNNEIGLPLTVLRADHTTRYLVLEMGASGSGHIAYLTSIAPLDAAAVL 217

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AH+  F  ++ +A AK+EI  GL  TG   LN DD     ++     L    + +F
Sbjct: 218 MIGHAHMGGFGSVDGVARAKSEIVTGLLPTGVAVLNLDDPRSAAMR----ELAPGRVLTF 273

Query: 251 GKSKNADFQLRKWK-QCSEQSW--MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306
             S +    LR    +  EQ+   +++ L G   E +  G+ G H   N L   G+    
Sbjct: 274 SASGDPRADLRASAVELDEQAHAVLDLHLPGARPERLRLGLPGRHNVTNALAAAGLALAA 333

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISP 365
             D    ++AL+      G    +R  + + G   +ID+SYNAN  SM AA+  L  ++ 
Sbjct: 334 GLDPSQVLQALA----GAGLESPHRMDVRECGGVLVIDDSYNANIDSMTAALEALPALA- 388

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
            G+ RR+ ++ +M E+G  S + H    E L+    + V ++     A      R+  VH
Sbjct: 389 -GQRRRVVIISEMLELGSASHADHTRTGE-LAAAAGAQVLVTIGQGAAPAAQAARAAGVH 446

Query: 426 YSETMDG-----LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             E  D      L     S L   D V++K S+  G +R+ + L
Sbjct: 447 TIELPDAQAAIELLDGGHSPLRPADAVLIKGSHGSGAWRVADHL 490


>gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
 gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
          Length = 436

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 206/454 (45%), Gaps = 53/454 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VNG +IDSRS++  + F  I     DGHDFI  A+  GA   + +   V      +I V 
Sbjct: 20  VNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAPAYLTSAGAVDGAAGAAIIV- 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             DD   AL  L  AAR R    ++ +TGSVGKT+TK++L   L++  +T A   S+NN 
Sbjct: 78  --DDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLLAGLLATTFRTAASEKSFNNE 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL   P D +  + E+G   +G I  L  + +P + +IT +   HL  F  IE +
Sbjct: 136 LGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIGKPTVGIITRVEGVHLELFGNIEAV 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------- 258
           A AK E+ E L   G   LN D      +  ++ A     + +FG +  +D         
Sbjct: 196 ARAKGELVEALPDDGIAVLNADHKHVAAMADRTSA----RVITFGLTPESDVHASAVVID 251

Query: 259 -QLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK- 315
            +LR  ++  S     +++L  +         G H   N L  +     L   ++   + 
Sbjct: 252 DELRASFRLHSPWGETDIRLAAR---------GEHQVPNALAAVAAAGGLGVPLEKFAEG 302

Query: 316 ----ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               ALS        G R     ++   T+++++YNANP SM AA+  L+ ++    GRR
Sbjct: 303 LLGAALS--------GLRMELVTSERGVTILNDAYNANPTSMSAALQSLAALA---AGRR 351

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           IAVLG M E+G  S   H  +A        S     G  V+A+ +    +   H ++   
Sbjct: 352 IAVLGTMAELGHDSAWQHEAIA--------SQARELGIEVIAVGEPTYGADVRHVADVAA 403

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  S L  GD V+VK S      R+   LL
Sbjct: 404 ASAEL--SDLGAGDAVLVKGSRVAELERVAQALL 435


>gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 463

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 212/456 (46%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G    V + D     +  +    
Sbjct: 32  SLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHESECIEYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  ELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + +   IF LN  + +   L  KAK     +K +Y        DF
Sbjct: 212 ELQVIAFEKSKI---IGRNIEIFVLNEMNDYCVYLEKKAKIENPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S        L+GK   + ++ G  Y +      N+   +G +++   L    
Sbjct: 262 ENLNIKSFS-------FLEGKIFYDFIYKGFEYSILLLGRHNIFNAIGCINLALFLGMGE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +       Q  + ++++SYN N  S  A   ++  ++   + +
Sbjct: 315 KEIREGLIETAFQKGRAE----IFTQNGYLILNDSYNGNMGSFMALKDIILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  +LG   E+GE     H DL +     N   ++L G   LA++D+  L      ++SE
Sbjct: 369 KFIILGSFKELGEFEYKTHKDLIQEAISMNFDKIFLIGEEFLAVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium variabile DSM 44702]
          Length = 505

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 200/487 (41%), Gaps = 54/487 (11%)

Query: 20  GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           G  P   V G +  DSR +     + A+ G   DGHDF+  A++ GA LV+       ++
Sbjct: 20  GADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVGPALEAGAALVMAGRPT--AL 77

Query: 79  GSLSIPVFGVD--------------DVLGALNKLAVAARLR---------SKATIIAITG 115
             L  P    +              D LG     AV+   R         ++ T+I +TG
Sbjct: 78  PELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARHSTEVLVAENRLTVIGVTG 137

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT+TK++L    S   +T A  GS NN IG P T+ +      + + E+     G I
Sbjct: 138 SAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPYTVLKAGRTTKYLVAEMSARGQGHI 197

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFF 232
             L  +  P I V+  +  AHL  F   E IA AK E+ E L    + G   LN DD   
Sbjct: 198 AHLARIAPPRIGVVLNVGTAHLGEFGSREGIAQAKGELVEALPPAAEGGVAVLNADDDLV 257

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG- 289
             +  ++ A  +      G    AD++       + +  S++    +G+ ++V     G 
Sbjct: 258 SGMAPRTAARVVYYSADQGADGTADYRASDITLDEVARASFLLHHPEGEPVKVSLGVFGA 317

Query: 290 -----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                   A    +  G+     A   T   A S          R          T+I++
Sbjct: 318 HNVANALAAAAAAIECGLAPSEVASALTGYTAASA--------NRMDVRTRPDGLTVIND 369

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           SYNANP SM+A I  L+  +    G    AVLG M E+GE +   H  +   L+   I  
Sbjct: 370 SYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAELGEDAVGEHTGIGAYLAERGIDR 429

Query: 404 VWLSGFHVLALKDALP-----RSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGF 457
           + + G  V   +DAL        I     + +DG + L   +    GDVV+VK+S S G 
Sbjct: 430 LIVVGHGV--NQDALAAAGEDNGIRTRQVDDVDGAVNLLTGAPTHPGDVVLVKASYSDGL 487

Query: 458 YRLINLL 464
           +R+   L
Sbjct: 488 WRVAERL 494


>gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 242

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 5/198 (2%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 39  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 93

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+T
Sbjct: 94  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK E
Sbjct: 154 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 213

Query: 213 IFEGLEKTGTIFLNYDDS 230
           I+ GL + G   +N D++
Sbjct: 214 IYTGLPENGIAIMNADNN 231


>gi|229083523|ref|ZP_04215861.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
 gi|228699777|gb|EEL52424.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
          Length = 335

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 166/343 (48%), Gaps = 13/343 (3%)

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS LGEI FL+ L RP+
Sbjct: 1   MTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSLGEIEFLSKLARPN 60

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    + IA AK EI  GL+  G    N D+      +  +  L  +
Sbjct: 61  AAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQNGGVFVYNGDEPLL-TNRVPNMNLAAE 119

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           TI +FG ++  D+        +  ++ ++  Q K        +G H   N L ++ I   
Sbjct: 120 TI-TFGDARANDYYPTSVTLQATGTYFKMN-QDKDTVFYLPVLGKHNVYNTLASMAIAKY 177

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 178 FGVTWEEMKQGLVTLQM---TGMRMEIVKTNNGLTVINDAYNASPTAMEAAFHLMNGLD- 233

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRS 421
            G  +++ VLGDM E+G+    FH ++ +++    IS+V+  G     + +      P+ 
Sbjct: 234 -GFAKKVVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPKE 292

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V   +  + L   +Q+ + + DVV+VK+S       +I +L
Sbjct: 293 -RVKVYDNKEELVKELQTVIDEKDVVLVKASRGMKLEEIITML 334


>gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
          Length = 501

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 200/449 (44%), Gaps = 31/449 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++   + F A++G  +D +DF+  A   GA   + +   + + G   +P   V 
Sbjct: 36  VHTDTRTLQAGDLFVALRGERFDANDFLAQARAGGAAAALAHPGRLDAAG---LPGIEVP 92

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147
           D L AL  LA   R R    ++ +TGS GKTT  +M+   L + K    +A  G++NN I
Sbjct: 93  DTLAALGALAAGWRARLDLPLVGVTGSNGKTTVTQMIASVLRAWKGDAAFATQGNFNNDI 152

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL L R+    +  + ELGM+H GEI  L  + RP +A++      HL     ++ +A
Sbjct: 153 GVPLMLLRLRDAHEAAVIELGMNHPGEIAVLAGIARPTVALVNNAQREHLEFMHTVQAVA 212

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                +   L   G       D++  L +  +   G +   +F         +R    C+
Sbjct: 213 EENGSVISALPPDGVAVFPAADTYAPLWRGLA---GTRRCLTFCDRAGVAADVR----CT 265

Query: 268 EQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +  W      +++     + +      G H   N L          A +D   + L+ F 
Sbjct: 266 DARWETGAWNVQIDTPQGAFDGTLRIAGRHNVANALAATACALAAGAPLDAIARGLAAFE 325

Query: 322 PKEGRGKRYRCALNQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           P +GR + +   + Q        T +D++YNANP SM+AAI VL+++     G ++ V+G
Sbjct: 326 PVKGRSRAFVATVAQPGGAPRRITAVDDTYNANPDSMRAAIDVLAELP----GPQLLVMG 381

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           DM E+G+    FH +         I  ++ L    + A++   P++ H    + M  L  
Sbjct: 382 DMGEVGDQGPQFHAEAGGHARERGIGRLFALGALGIHAVQAFGPQARHF---DDMASLLA 438

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++ +  +   V+VK S      +++  L
Sbjct: 439 AVRKAAPESGSVLVKGSRFMKMEQVVQAL 467


>gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/11023]
          Length = 450

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---AERFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI +A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 519

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 129/483 (26%), Positives = 207/483 (42%), Gaps = 82/483 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88
           +  DSR++ P   F A+ G   DGHD    AV  GA  V+    + V +I  ++ PV   
Sbjct: 34  VEFDSRAVGPGGLFLALPGARTDGHDHAEAAVAAGAVAVLAARPVGVPAI--VAPPVDAA 91

Query: 89  DDVLGALNKLA----------------------VAARLRSKATIIAITGSVGKTTTKEML 126
           D + G L   A                      VA  L    TI+ ITGS GKT+TK+++
Sbjct: 92  DALAGVLEHDADGSGAAVLAALAKLARAVAAELVAGGL----TIVGITGSSGKTSTKDLV 147

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+ + +  A  GS+NN +G P T+ R   D D+ + E+   H G I  L  +  P +
Sbjct: 148 AAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTDYLVLEMSARHPGNIAALAEIAPPAV 207

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +  AHL  F   E IA  K+E+ + +  +G + LN DD     +   + A     
Sbjct: 208 GVVLNVGTAHLGEFGSREAIARTKSELPQAVPASGVVVLNVDDPTVAAMAEVTAA----R 263

Query: 247 IYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQ 294
           +   G++++ +      W      S  E+   G ++   H G            G H   
Sbjct: 264 VVRVGRAEHTEAGPSDVW--AGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGDHQVG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +     A V+  + AL+   P      R + +      T+ID++YNANP SM+
Sbjct: 322 NALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQVSTRGDGVTVIDDAYNANPDSMR 379

Query: 355 AAISVLSQIS-----PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A +  L+ I+     P    RR  AVLG+M E+G+ + + H  +  +    ++S + + G
Sbjct: 380 AGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVG 439

Query: 409 FHVLALKDALPRSIH-VHYSETMDG-----------------LFLFIQSSLVDGDVVVVK 450
                      RS+  +H+   M+G                     +++ L  GDVV+VK
Sbjct: 440 TG---------RSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLVK 490

Query: 451 SSN 453
           +SN
Sbjct: 491 ASN 493


>gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteriovorax marinus SJ]
          Length = 455

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 189/422 (44%), Gaps = 41/422 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLS----- 82
           +S DSR+ + +  F  + G ++DG +FI   ++KG   +V   N + +  + +LS     
Sbjct: 23  LSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQD 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSI--KKT 136
           +   GVD  L  L  LA   R++        +  ITGS GKTTTKEML   LSS   K+ 
Sbjct: 83  VTFIGVDSPLATLQSLA-NKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEV 141

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +A  G+ NNHIGVPLT+   P    + I E+G +H+GEI  L  +  P   +I+++  AH
Sbjct: 142 HATKGNLNNHIGVPLTILSAPTCCKYMIVEMGANHVGEISDLCEIAMPEFGIISSVGAAH 201

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  F GIE I   K  +++ + +  T      +N +D +   +         + +  FG 
Sbjct: 202 IGLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYLSQISPS------EVLIKFGD 255

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S + D    + K       +E     +   + +    Y +A         V+I     DT
Sbjct: 256 SSDVDVTYDEGKIVINNVNIENVNILEKYNLSNLASAYLLA---------VNIFPDKKDT 306

Query: 313 AIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-SVLSQISPHG--E 368
            I A S +  P   R +       Q F     ++YNANP SM++++ S +  +   G   
Sbjct: 307 FISAASEYRIPSLNRSEWIERNGKQIFL----DAYNANPTSMESSLNSFVENMKKKGIPL 362

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
              + VLGDM E+G+ ++  H  +A  L      +V   G +       LP  I     E
Sbjct: 363 DDVLFVLGDMNELGDYAKDEHERIARQLDGLGAKNVIFVGNYSKYYMQGLPSGIMFEKKE 422

Query: 429 TM 430
            +
Sbjct: 423 DL 424


>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70]
 gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70s]
 gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis Sweden2]
 gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/150]
          Length = 450

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---AERFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI +A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 300

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 127/239 (53%), Gaps = 21/239 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 83  PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +P +A+IT I  +HL  
Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLKT 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               EEIA AK EI +GL   G    N D+    LL    + LGI++  SFG+    D 
Sbjct: 203 LGSREEIAKAKFEIIDGLHDDGLFLYNGDEP---LLSQNINMLGIES-KSFGRKYTNDL 257


>gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 427

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 183/373 (49%), Gaps = 28/373 (7%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +IDSR++   + FFA  G  ++       A  KGA  V+V      +       +F V  
Sbjct: 20  TIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPAR---DIFYVPS 76

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L  L +LA   R +    +IA+TGS GKTTTKE++   L+         G+ NNHIGVP
Sbjct: 77  TLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLNNHIGVP 136

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL  +    +  + E+G +H  EI  L  + +P    IT    AHL  F G E +   K
Sbjct: 137 LTLLSVRSHHNMAVIEMGANHQKEIEMLCEIAKPTYGYITNFGKAHLEGFGGFEGVIKGK 196

Query: 211 AEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           +E++  L   + TI +N +D+    ++ ++ A G   + +FGK  ++D+    +++ S Q
Sbjct: 197 SEMYSYLRANSQTILVNENDA----IQVENTA-GYSPVITFGKP-DSDYL---FEEVSNQ 247

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGK 328
           +++ ++   ++      G           +LG+   I   ++ TAI+    + P   R +
Sbjct: 248 NFVGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGISFREIKTAIEN---YVPTNMRSQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                L +   TL+ ++YNANP+SM+ ++   ++     EG +  ++GDM E+G  S++ 
Sbjct: 305 ----ILEKNGKTLVLDTYNANPSSMEESLKNFNRF----EGSKTIIIGDMLELGNESEAE 356

Query: 389 H---IDLAEVLSL 398
           H   +DLA  L+ 
Sbjct: 357 HRRILDLAGSLAF 369


>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 471

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 193/420 (45%), Gaps = 27/420 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIP 84
           +G+  DSR +   E FF I G  +DGH F    ++KGA  VV       M         P
Sbjct: 27  SGVQTDSRCVRDGELFFCISGERFDGHTFAAEVLEKGACAVVAERPPFSMDEMQDRQDRP 86

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D + AL +LA+  R+ + A +  ITG+ GKTT KE+L   LS    T     + N
Sbjct: 87  VLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKTTVKELLAHVLSVRGATARNHLNRN 146

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PL++     D  F + E G+S   ++  L  ++RP +AV+  +   HLS   G +
Sbjct: 147 NQIGLPLSMLAATGDERFWVMEAGISQAADMDELGSVLRPDLAVVLNVGQGHLSGL-GDK 205

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A  KA + + + + G   ++ D  + +LL       G   ++S        F      
Sbjct: 206 GVAHYKARLLKHIARGGVGLVSAD--YPDLLAEARKNCGELRLFSAVDPAVPYFCEYAGP 263

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFH 321
               +    V+L+ +  E      G + A+N++       I+ + +A++   ++   +  
Sbjct: 264 AGEGRGLYRVRLESREFETEAPFRGAYGAENVIAVAAAAHILGLTSAEIAEGLRTAEL-- 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCE 380
           P++    R+ C    G + +ID++YNANP S   A  ++   + +  G  +  V+G+M E
Sbjct: 322 PQQ----RFNC-RRYGRWLVIDDTYNANPLS---AGRMVESTAENACGEPVVFVMGEMLE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE +   H +L   L     + V+  G H   +++ L       ++E  +G F+ +  +
Sbjct: 374 LGEAAAQAHTELGRALGRACPAAVFWKGGHGGHVQEGL-------HAEGWNGPFVPVADA 426


>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum Nigg]
          Length = 450

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 209/449 (46%), Gaps = 43/449 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG-------PDY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LS   K +A   
Sbjct: 78  GLQLLHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  NF 
Sbjct: 138 SYNSQLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFV 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF 258
             G + IA  K+ +   LE+ G   L  D S+F     K+ A      +SF   ++ ADF
Sbjct: 198 DKGAQGIAEEKSLL---LERCGIHLLPRDSSWFNFFMKKNAA---ADQFSFSMNNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-L 317
             R     SE   +        + VV      +M  N ++ + +  +    +D   +A  
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPVVFPYTPAYM--NFIIAVALAWLTNVPMDRLEQASQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +    P   G+ + +LG 
Sbjct: 308 SLFLPS----MRFEQQEHNG-IRIINDAYNASPDAMLAALDAVP--IPSEGGKTVFILGH 360

Query: 378 MCEMGELSQSFHIDLA-----EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           M E+G  S   HI +A     +   ++ +   W     V++  DA   +  + +  ++  
Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHVVFFVGEKWSPVREVVS--DA---NCQIEFYGSVSE 415

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +   ++S +  GDVV++K S S     L+
Sbjct: 416 IMHVVKSLVRRGDVVLLKGSRSLELETLL 444


>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
 gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
          Length = 452

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 209/449 (46%), Gaps = 43/449 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 27  VTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG-------PDY 79

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LS   K +A   
Sbjct: 80  GLQLLHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPK 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  NF 
Sbjct: 140 SYNSQLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFV 199

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF 258
             G + IA  K+ +   LE+ G   L  D S+F     K+ A      +SF   ++ ADF
Sbjct: 200 DKGAQGIAEEKSLL---LERCGIHLLPRDSSWFNFFMKKNAA---ADQFSFSMNNETADF 253

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-L 317
             R     SE   +        + VV      +M  N ++ + +  +    +D   +A  
Sbjct: 254 YYRAIH--SEGVLISAPDGDIELPVVFPYTPAYM--NFIIAVALAWLTNVPMDRLEQASQ 309

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +    P   G+ + +LG 
Sbjct: 310 SLFLPS----MRFEQQEHNG-IRIINDAYNASPDAMLAALDAVP--IPSEGGKTVFILGH 362

Query: 378 MCEMGELSQSFHIDLA-----EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           M E+G  S   HI +A     +   ++ +   W     V++  DA   +  + +  ++  
Sbjct: 363 MAELGRYSDECHIAVARKAVTKAHVVFFVGEKWSPVREVVS--DA---NCQIEFYGSVSE 417

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +   ++S +  GDVV++K S S     L+
Sbjct: 418 IMHVVKSLVRRGDVVLLKGSRSLELETLL 446


>gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
 gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
          Length = 468

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 195/450 (43%), Gaps = 32/450 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR++   + F A+KG  +D HDF+     +          +  +   +++P+    
Sbjct: 29  VSTDSRTVGAGDLFVALKGERFDAHDFLADVAAR----GAAAALVAQAPAGIALPMIVGG 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           +   AL  LA   R R    ++A+TGS GKTT KEM+    ++    +A +   G+ NN 
Sbjct: 85  ETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGAHARLATAGNLNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  L  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLAAAHRLAVIELGMNHRGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +    I         +    Q+      
Sbjct: 205 ALEHAAVIHALPPDGVAVFPADDAYASIWRVAATGNRILDFALHDDERQTAAQVTGRLHG 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   + +     ++ V    +G H A+N L            +    + L  F P +GR
Sbjct: 265 GE---LAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVALSAIKQGLESFEPVKGR 321

Query: 327 GK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            + R   A +    T++D++YNANP SM+AAI VL +Q +P     R+ V+GDM E+G+ 
Sbjct: 322 LQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RVLVIGDMGEVGDE 376

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSL 441
             +FH ++        I  ++       AL DA  R     Y E     D +   + + L
Sbjct: 377 GPAFHREVGAYARERGIDALF-------ALGDA-SRDACAAYGEAARHFDDVGTLVDALL 428

Query: 442 VDG----DVVVVKSSNSCGFYRLINLLLEE 467
             G      V+VK S      R+++ L  +
Sbjct: 429 AAGYGADASVLVKGSRYMKMERVVDALTNQ 458


>gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
 gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
          Length = 468

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 192/450 (42%), Gaps = 32/450 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR++   + F A+KG  +D HDF+     +          +  +   +++P+    
Sbjct: 29  VSTDSRTVGAGDLFVALKGERFDAHDFLADVAAR----GAAAALVAQAPAGVALPMIVGG 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           +   AL  LA   R R    ++A+TGS GKTT KEM+     A        A  G+ NN 
Sbjct: 85  ETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  L  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLTAAHRLAVIELGMNHPGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +    I         +    Q+      
Sbjct: 205 ALEHAAVIHALPPDGVAVFPADDAYASIWRVAATGNRILDFALHDDERQTAAQVTGRLHG 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   + +     ++ V    +G H A+N L            +    + L  F P +GR
Sbjct: 265 GE---LAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVALSAIKQGLESFEPVKGR 321

Query: 327 GK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            + R   A +    T++D++YNANP SM+AAI VL +Q +P     R+ V+GDM E+G+ 
Sbjct: 322 LQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RVLVIGDMGEVGDE 376

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSL 441
             +FH ++        I  ++       AL DA  R     Y E     D +   + + L
Sbjct: 377 GPAFHREVGAYARERGIDALF-------ALGDA-SRDACAAYGEAARHFDDVGTLVDALL 428

Query: 442 VDG----DVVVVKSSNSCGFYRLINLLLEE 467
             G      V+VK S      R+++ L  +
Sbjct: 429 AAGYGADASVLVKGSRYMKMERVVDALTNQ 458


>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
          Length = 450

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITYIDVQHAMHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI  A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 450

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI  A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 450

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---AERFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI +A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDTV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
 gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
          Length = 464

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 213/454 (46%), Gaps = 28/454 (6%)

Query: 24  QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MV 75
           Q  V+  S+DSR I  + +    +FA KG   DG  F+ + +  G    V + D     V
Sbjct: 26  QRVVSFYSLDSREINDENSGASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKDYEHLCV 85

Query: 76  ASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +      VF +  +V+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 86  EYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFKRIAITGSNGKTTTKEMLYSILSERY 145

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE+  L+ ++ P I ++T I+ 
Sbjct: 146 KTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYVGEMNLLSEILEPEIVIVTNISY 205

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGK 252
           AH+  F  +E IAS K+EI    + T  + LN    +   L+  AKS +  I   Y    
Sbjct: 206 AHMQAFEDLEMIASEKSEIIT--KSTQMVILNESCPYHSRLREIAKSISPEINIFYFDFN 263

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S     Q++ +   +++   +   +G    ++    G H   N +  + +  +L    + 
Sbjct: 264 S----LQIKSFAFLNDKFSYDFTYKGFDYSILLP--GKHNIFNAISCINLALLLGMSENE 317

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L     ++GR +  R       + ++++SYN N  S  A   ++  +    +G++ 
Sbjct: 318 IRNGLLNADFQKGRAELLRVKD----YLVLNDSYNGNLGSFMALKEMI--LDFEIKGKKF 371

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETM 430
            +LG   E+G+ +   H      + L N   V+L G  F  +  ++ L  +   ++S   
Sbjct: 372 IILGSFKELGKFAYEAHKTAMREVILMNFDKVFLIGEEFQEVKRRENLSLNNLCYFSNFE 431

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           D +  F+ ++L  G  + +K S S    R+++ L
Sbjct: 432 DFIDCFV-NNLESGCFIAIKGSRSNRLERVLDYL 464


>gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria monocytogenes FSL F2-208]
          Length = 346

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 126/247 (51%), Gaps = 12/247 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  D+R I   + F    G   DGH+F+  A + GA       ++         PV 
Sbjct: 39  ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++NNH
Sbjct: 97  LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEI
Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216

Query: 207 ASAKAEIFEGLEKTG--------TIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           A AK EI  GL  +G        T+ L N +  F +L   KS A  I  +    +++   
Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTS 276

Query: 258 FQLRKWK 264
           F +  W+
Sbjct: 277 F-ITNWE 282


>gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 483

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 148/487 (30%), Positives = 221/487 (45%), Gaps = 35/487 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR       F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAHLGSAGALG 65

Query: 65  A-GLVVVNTDMVAS---IGSLSIPVFG---VDDVLGALNKLA---------VAARLRSKA 108
           A G +V + +   S    G    P  G   V+D + AL  LA          AA    + 
Sbjct: 66  AVGAIVSDLEAARSGLSQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRAAADRGERL 125

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T++A+TGSVGKTTTK++    L+    T A   S+NN IG+PLT+        + + E+G
Sbjct: 126 TVVAMTGSVGKTTTKDLTRQLLAPSGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEMG 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G I +LT +     A +  +  AH+  F  IE +A+AKAEI  GL   GT  LN D
Sbjct: 186 ASGPGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTTILNAD 245

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG--KSMEVVH 285
           D+    +   + A  + T  S G++  AD +        + ++  ++ L G  +   V  
Sbjct: 246 DARAAAMAELAPAR-VLTFSSQGRA--ADLRTENVVLDVAARAAFDLHLPGLDEPRRVQL 302

Query: 286 HGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              G H   N L   G+          +   + ++S+  P      R   +   G   LI
Sbjct: 303 SVAGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESP-----HRMDVSELGGDLLLI 357

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+SYNAN  SM AA++VL  ++  G+ RR+ V+ +M E+GE S + H    E+ +    +
Sbjct: 358 DDSYNANIDSMTAALAVLPALA--GDRRRVVVVSEMLELGESSAADHARTGELAAQAGAA 415

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL +
Sbjct: 416 MLIGIGSTQEALEAAGARGVEVVGFDDAATAISQIDALLSDGDAVLVKGSNGSGAWRLAD 475

Query: 463 LLLEEFP 469
            L E  P
Sbjct: 476 HLKEVRP 482


>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276]
 gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276s]
          Length = 450

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI  A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis G/11222]
 gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-EC]
 gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-LC]
          Length = 450

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI  A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q     GDVV++K S S     L+
Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444


>gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 474

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 165/367 (44%), Gaps = 10/367 (2%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           R +A  + +F  K   +D     L +    A   V+   +  S    S+ +  V DV  A
Sbjct: 59  RRLAKNQIYFYSKSRSWDKQLAGLQSTPPAA--AVLPEGISWSSIPKSVAIVRVSDVNQA 116

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +LA     + +  + A+TGS GK+TT  M+T  L   ++     G+ N    +P  L 
Sbjct: 117 IWRLANWNWRQVRPQVAAVTGSAGKSTTTSMVTSILKRSRRVVHTQGNLNTFTYLPSYLL 176

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R+    +F + E+GM     I     +VRP +  +T +  AH     G+  +  AK E+ 
Sbjct: 177 RLSPGDEFLMLEMGMKSFNNIARQCRVVRPEVGAVTNVGEAHAGQLGGVHRVVKAKQELI 236

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +GL    T++LN D    + L  +       ++Y+FG    AD Q    +  +     +V
Sbjct: 237 DGLRPGATLYLNADCLRSKQLSTRRFR---GSVYTFGIRNPADIQGSNIQYSTNGVSFDV 293

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +GK         G H   N L  +GI   L          L+       R +R R + 
Sbjct: 294 MTEGKRGRFFIPTWGDHNVLNALAAIGIARALGIGFHQIRDGLAKVKLPRMRLQRIRGSH 353

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +   TLI++++NANP++MKA +SVL  +S    G  IAVLGDM E+G  +++ H ++  
Sbjct: 354 GR---TLINDAWNANPSAMKAGLSVLRYLSSKRPG--IAVLGDMMELGGYTRAGHREVGR 408

Query: 395 VLSLYNI 401
             +  N+
Sbjct: 409 FAARMNL 415


>gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 216

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 9/223 (4%)

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96
           + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D   A  
Sbjct: 1   MTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTRQAFG 55

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+TL R+
Sbjct: 56  QLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRL 115

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK EI+ G
Sbjct: 116 NHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG 175

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF 258
           L + G   +N D++  + L  +S  +G + ++ F   + N+DF
Sbjct: 176 LPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDF 215


>gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9768]
 gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/11074]
 gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9301]
          Length = 450

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 207/441 (46%), Gaps = 41/441 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D          P +
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G+  +  A  + A+ A  R++       +I ITGSVGKTTTK      LSS+ K +    
Sbjct: 78  GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKVFMSPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           SYN+ + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F 
Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFL 197

Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
             G + I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF
Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADQFSFSMSNETADF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317
             R     SE   +        +  V      +M  N ++ + +  I    +D   + + 
Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S+F P      R+    + G   +I+++YNA+P +M AA+  +  + P G G+ I +LG 
Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360

Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433
           M E+G  S   HI  A   V   + I  V    F V  + +DA  +   +   SE MD +
Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420

Query: 434 FLFIQSSLVDGDVVVVKSSNS 454
              +Q     GDVV++K S S
Sbjct: 421 KALVQQ----GDVVLLKGSRS 437


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 175/380 (46%), Gaps = 9/380 (2%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH +I    QKG    V+N    A+       
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQKGVRNFVINEIPEAASSYTDAN 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V + L +L +LA   R + +  +I ITGS GKT  KE L   LS  +       SYN
Sbjct: 84  FLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTVVKEWLYQILSPDRTITRSPRSYN 143

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++  M    + GIFE G+S +GE+  L  +++P I ++T I  AH  NFS ++
Sbjct: 144 SQIGVPLSVWLMNEHTELGIFEAGISEMGEMEALRPIIQPTIGILTNIGGAHQENFSSVQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +    K ++F+  +    I  N D+        KS     +  +S   S+   F + K  
Sbjct: 204 DKCMEKLQLFKDCD---VIVYNGDNELITSCVTKSLFTAREIAWSTKDSERPLF-IEKIL 259

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +    + ++ +  G   E     I     +N L  L +   L    +T  + +    P  
Sbjct: 260 KDDTGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVALYLMVPPETIAERMLHLEPI- 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +   TLI++SYN++ AS+  A+  + + S      R  +L DM E G+ 
Sbjct: 319 --AMRLEVKEGKNGCTLINDSYNSDFASLDIALDFMMRRSEDKNRERTLILSDMLESGQT 376

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           S+  +  +A+++    + H+
Sbjct: 377 SKLLYRQVADLVHSRKVDHI 396


>gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
 gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
          Length = 467

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 198/451 (43%), Gaps = 43/451 (9%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR + P   F A+ G   DGHDF   AV             V +   L +P   V D   
Sbjct: 34  SRQVGPGTLFVALVGARSDGHDFAAAAVAA-------GAPAVLAARPLGVPAVVVADPSA 86

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL  LA   R  ++AT++A+TGS GKTTTK++L   L+ +  T A  GS+NN IG+PLTL
Sbjct: 87  ALAALAAHVRDIARATVVAVTGSAGKTTTKDLLADLLAELGPTVAAPGSFNNEIGLPLTL 146

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAE 212
            R   D  F + E+G   LG I  L  + RP +  +  +  AH+  ++ G   IA+AK E
Sbjct: 147 LRTEPDTAFVVLEMGARGLGHIATLCAVARPSVGAVLNVGSAHVGEYTDGRLGIAAAKGE 206

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSW 271
           + E  +    + LN DD     +  ++       + +FG+   AD +    +      + 
Sbjct: 207 LAEAAQD--AVILNADDPLVAAMAPRARG----EVITFGEDAAADVRGAGVRVDPLGHAS 260

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            ++   G+   V    +G H   N L        L   +  A  A ++   +     R  
Sbjct: 261 FDLLAGGERHRVTLGLVGAHQVPNALAAA--AVALRLGLSPARTAAALGAARARSRWRME 318

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    +++++YNANP SM+AA++ L  +   G GR IAVLG M E+G+ +   H  
Sbjct: 319 VTRTAAGVVVVNDAYNANPESMRAALATLVDM--RGAGRAIAVLGGMGELGDAADDAHDA 376

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG------- 444
           L  +     I  V   G          P +  +H + +++G +      + D        
Sbjct: 377 LGRLAVRLGIDQVIAVG----------PAARRIHLAASLEGSWDGESRWVADADEAVATV 426

Query: 445 -------DVVVVKSSNSCGFYRLINLLLEEF 468
                  DVV+VK+S S G  R+   ++  F
Sbjct: 427 VALARPDDVVLVKASRSYGLERVAEDVVTRF 457


>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
 gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
          Length = 256

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 4/203 (1%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR  AP   F  +KG   DGH FI   +++GA   +   D      SL+ P  
Sbjct: 28  ITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVMEQGALATLTEEDP----SSLTCPCI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+    AL  +A   R++    ++ ITGSVGKT+TKE +   LS         G++NN 
Sbjct: 84  HVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTSTKETIASVLSRKYNVLKTEGNFNNG 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLT+  +  + +  + E+G+ H GE+  L  + +P I VIT I  AH+ N    + I
Sbjct: 144 IGLPLTIFNLTEEHEVAVLEMGIDHFGEMHELASISQPDICVITNIGLAHMENLGSRDGI 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDD 229
             AK E+F+ L    ++ LN DD
Sbjct: 204 LKAKTEVFDHLRPNASVILNGDD 226


>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 504

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 197/485 (40%), Gaps = 47/485 (9%)

Query: 20  GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           G  P   V G +  DSR +     F A+ G   DGH++   A+ +GA  V V       +
Sbjct: 20  GAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGA--VAVLAARPVDV 77

Query: 79  GSLSIPVFGVDD----------------VLGALNKLA-------VAARLRSKATIIAITG 115
            S+ +P     D                V+ AL+KLA       V A      T++A+TG
Sbjct: 78  PSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLAVGAH---DLTVVALTG 134

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT+TK+ +   LS    T A  GS+NN +G+P T  R      + + E+    +G I
Sbjct: 135 SAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTTHTRYLVAEMSARGIGHI 194

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFF 232
             L  +  P I  +  +  AHL  F     IA AK E+ E L      G   LN DD F 
Sbjct: 195 AHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGELVEALPAAADGGVAVLNADDPFV 254

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-----QSWMEVQLQGKSMEVVHHG 287
             +  ++ A     + +F  +       + W    E     ++   +     S  V    
Sbjct: 255 AAMAPRTTA----RVVTFSTANPPAPGAQYWAGDLELDDVARASFTLHTPRGSWPVSLQV 310

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L    +      D  T +  LS          R          T+I++SYN
Sbjct: 311 FGEHQVANALAAAAVAIEAGVDETTVVSGLSSH--AAASAHRMDVRTRPDGVTVINDSYN 368

Query: 348 ANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ANP SM+A ++ L+   S   +    AVLG M E+G+ +   H  L   L+ Y++  +  
Sbjct: 369 ANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEHRALGAELAKYHVERLIA 428

Query: 407 SG--FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            G   +  AL++ A    +              ++  + DGDVV+VK+SN+   +R+   
Sbjct: 429 VGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDVVLVKASNADQLWRVAEE 488

Query: 464 LLEEF 468
           L   F
Sbjct: 489 LHAMF 493


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 208/455 (45%), Gaps = 26/455 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFF-AIKGPHYDGHDFILHAVQ 62
           +   +L Q +    IG   Q  +     D+R+I  P    F  +KG    G  ++  A Q
Sbjct: 7   YNLGELAQILNAKLIGDKEQT-IEEYYFDTRTIVCPTNGLFITLKGLQKSGAYYLDEAYQ 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSV 117
           KG     + + +V+SI +   P  G     V DVL AL  LA   R R    +  ITGS 
Sbjct: 66  KG-----IRSFLVSSIPAQ--PKDGANYLLVQDVLVALQMLAKHHRQRFTLPLFGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   L +         SYN+ +GVP ++  +    D GIFE G+S   E++ 
Sbjct: 119 GKTVVKEWLYQLLWNEYNIARSPKSYNSQLGVPFSVLLIDEHNDLGIFEAGVSQPNEMQA 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P  A++T I  AHL NF     +A  K ++ E  ++   I    DD   E L +
Sbjct: 179 LRCILQPTTAILTNIGSAHLENFLDRRSLALEKIQLLEAAQE---IIYPADDELIEELIS 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +     K   +FGKS  A  QL++++  + QS +++++ G    ++         QN L
Sbjct: 236 SNPVFDSKRRITFGKSDKATVQLKQYQTINGQSSIDIEISGVLFNIIIPFTDQASIQNAL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    +  L  +++          P E R +  + A+N     LI++++N++  S+K A+
Sbjct: 296 ICCASIYSLNKNLNDYKSKFEKLLPIEMRLE-IKEAINNSI--LINDAFNSDLISLKNAL 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+Q S     R++ VL D+ +     +  +   AE+++ Y+ + + L G  + A K  
Sbjct: 353 DTLAQQS---RERKVLVLTDILQSKLADKELYQKTAELVNPYHFTEIVLIGEKISAYKKL 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                +V    + D     IQ   +  +V+++K S
Sbjct: 410 FKS--YVRAFSSTDDFLRHIQHENIHNEVILLKGS 442


>gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
 gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
          Length = 463

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 218/456 (47%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G    V +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  ELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQTIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVS--ILTADVD 311
           +    K  S        L+GK S + V+ G  Y +      N+   +G ++  +     +
Sbjct: 262 ENLSIKSFS-------FLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             IK  L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  VLG   E+GEL+   H DL +     N   ++L G   L ++D+  L      ++SE
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 219/473 (46%), Gaps = 28/473 (5%)

Query: 1   MNPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFI 57
           M+PL  + H+++  +  +  GI    + + ISIDSRS+   E   FFA+ GP+ D H +I
Sbjct: 1   MDPLTISLHNIIPILDANFQGIDENIYYDTISIDSRSLQNNENTLFFALVGPNNDAHIYI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + KG    VV        G  +  +  V + L AL   A   R      II ITGS 
Sbjct: 61  GDLISKGVKNFVVTYIPKRLTGKANFLI--VKNTLVALQIFARYYRNLFHFPIIGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ +GVPL++  +  + + GIFE G+S   E+  
Sbjct: 119 GKTIVKEWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINENHNLGIFEAGISTKDEMEN 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I ++T I  AH   F+ I E    K ++F  +E    + LN + +    +  
Sbjct: 179 LQKIIQPTIGILTNIGTAHDEGFADISEKIKEKLKLFTAVE---VLILNKNKTIETFIN- 234

Query: 238 KSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                  K I +F  S N   AD   +K K  ++ + + +  QGK  ++    I     +
Sbjct: 235 -------KEINTFTWSTNDQSADVFFQK-KTLNDHALLNITNQGKYFKIKIPFIDEASLE 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + ++  L  D+DT    +S   P E R K  +  +N    TLID+SY+++  S+K
Sbjct: 287 NSMHCILVMLYLKYDLDTIKHRISQLFPVEMRLK-VKNGINNC--TLIDDSYSSDFQSLK 343

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  L     H   ++  +L D+ + G  ++  ++ +++++    I+ V   G  +   
Sbjct: 344 IALDFLENQKQH--LKKTLILSDIYQSGLENEDLYVRVSQLIISNKINRVICIGGVISKY 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           K+     I   Y  T D +  F      + + +++K S    F +++ LL E+
Sbjct: 402 KNKFLNVI--SYLSTNDFIEDFDNLDFTN-ETILIKGSRHFEFEKIVTLLEEK 451


>gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 519

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 207/488 (42%), Gaps = 92/488 (18%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88
           +  DSR++ P   F A+ G   DGHD    AV  GA  V+    + V +I  ++ PV   
Sbjct: 34  VEFDSRAVGPGGLFLALPGARTDGHDHAESAVAAGAVAVLAARPVGVPAI--VAPPVDAA 91

Query: 89  DDVLGALNKLA----------------------VAARLRSKATIIAITGSVGKTTTKEML 126
           D + G L   A                      VA  L    TI+ ITGS GKT+TK+++
Sbjct: 92  DALAGVLEHDADGSGAAVLAALAKLARAVAAELVAGGL----TIVGITGSSGKTSTKDLV 147

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+ + +  A  GS+NN +G P T+ R   D D+ + E+   H G I  L  +  P +
Sbjct: 148 AAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTDYLVLEMSARHPGNIAALAEIAPPAV 207

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----------- 235
            V+  +  AHL  F   E IA  K+E+ + +  +G + LN DD     +           
Sbjct: 208 GVVLNVGTAHLGEFGSREAIARTKSELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRV 267

Query: 236 -KAKSHALGIKTIY----SFGKSKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +A+    G   ++    S  +     F L  +    + Q+ +++ + G           
Sbjct: 268 SRAEHTEAGPSDVWAGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGD---------- 317

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L    +     A V+  + AL+   P      R + +      T+ID++YNAN
Sbjct: 318 -HQVGNALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQVSTRGDGVTVIDDAYNAN 374

Query: 350 PASMKAAISVLSQIS-----PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           P SM+A +  L+ I+     P    RR  AVLG+M E+G+ + + H  +  +    ++S 
Sbjct: 375 PDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSR 434

Query: 404 VWLSGFHVLALKDALPRSIH-VHYSETMDG-----------------LFLFIQSSLVDGD 445
           + + G           RS+  +H+   M+G                     +++ L  GD
Sbjct: 435 LVVVGTG---------RSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALELLRAELQPGD 485

Query: 446 VVVVKSSN 453
           VV+VK+SN
Sbjct: 486 VVLVKASN 493


>gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanyl ligase MurF [Mycobacterium
           tuberculosis H37Rv]
 gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium
           bovis AF2122/97]
 gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis GM 1503]
 gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis K85]
 gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis 210]
 gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Rv]
 gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis AF2122/97]
 gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis W-148]
          Length = 510

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 204/490 (41%), Gaps = 73/490 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+I P   F A+ G   DGHD    AV  GA +V+    +   + ++ +P     
Sbjct: 34  VEFDSRAIGPGGLFLALPGARADGHDHAASAVAAGAAVVLAARPV--GVPAIVVPPVAAP 91

Query: 90  DVLGAL-------------------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +VL  +                        A  +    TII ITGS GKT+TK+++   L
Sbjct: 92  NVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVL 151

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + + +  A  GS+NN +G P T+ R     D+ I E+   H G I  L  +  P I V+ 
Sbjct: 152 APLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVL 211

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL  F   E IA  KAE+ + +  +G + LN DD     + AK   L    +   
Sbjct: 212 NVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVRV 267

Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305
            +    D     W       E +     L     +  V  G+ G H   N L    +   
Sbjct: 268 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 323

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364
             A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+ 
Sbjct: 324 CGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 381

Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            P    R  AVLG+M E+GE + + H  +  +    ++S + + G           RSI 
Sbjct: 382 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSIS 432

Query: 424 -VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCGF 457
            +H+   ++G +   +++                         L  GDVV+VK+SN+ G 
Sbjct: 433 AMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGL 492

Query: 458 YRLINLLLEE 467
             + + L+ +
Sbjct: 493 GAVADALVAD 502


>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
 gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
          Length = 426

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 202/439 (46%), Gaps = 28/439 (6%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           ++S+ +   + F A+KG  +DGHDFI  A++ GA  ++     V S       +F V+  
Sbjct: 11  LNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSD-----RIFLVESS 65

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ N   G+PL
Sbjct: 66  VDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           ++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   E I   K 
Sbjct: 126 SILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKM 185

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           EI +  ++       +DD        +      +    FGK +  D  L+ W      + 
Sbjct: 186 EIIKHSKENAIAVTLFDDP-----DLRKEVPRYRNTLFFGK-EGGDSVLKDWWYYEGSTI 239

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            E +       V   G  ++  Q  N+  +L ++  L   VD  I  L+      G   R
Sbjct: 240 AEFEAFDSLFTVKLSGY-WNGGQLLNIAASLCVMRTLGETVD--IFDLASLKTVPG---R 293

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +     +G   ++D++YNA+P + + +I  L +      G++ AV+G M E+GE S+ FH
Sbjct: 294 FNVREKKGVL-IVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L E L++ +  +V+LS      +K    + I +  S+  + +   + + +  GDVV+ 
Sbjct: 349 EELGERLNVLDGVYVFLSEPEAEWIK---SKKI-ILKSDDPEKIAKDLATRVKKGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEF 468
           K+S +    R++ +  +E 
Sbjct: 405 KASRAVRIERVLEMFEKEL 423


>gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
 gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
          Length = 510

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 211/492 (42%), Gaps = 56/492 (11%)

Query: 19  IGI-VPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           IG+ VP G     V+ +  D+R I P   F A++G   DGHDF   A   GA  V+ +  
Sbjct: 13  IGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDFAATAAAAGAVAVLGSAP 72

Query: 74  MVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTI 128
           + A +  L +P      GV D L AL + +V A +R     ++ +TGS GKT+TK+++  
Sbjct: 73  VSAPLPLLQVPDRPDNAGVLDALAALARASVTALVREHGLQVVGVTGSSGKTSTKDLIAA 132

Query: 129 ALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            L ++     ++  A   S+NN +G P T  R      F + EL     G I  L  +  
Sbjct: 133 VLRAVPGTGPERVIAPPESFNNELGHPYTALRADESTAFLVLELSARGAGHIAALARVAP 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-------IFLNYDDSFFELLK 236
             I  +  +  AHL  F  +E IA AK+E+ + L   G          LN DD+    + 
Sbjct: 193 LRIGAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQPLTGGVAILNADDALVAAMA 252

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             + A     +   G    A  +     Q       +  V  +G S  V    +G H   
Sbjct: 253 ELTAA----EVVMVGTGAAAQVRATDVGQDDADRARFTLVTPEG-SAPVTLRVVGAHQIG 307

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPAS 352
           N L    +   +        +ALS   P      R+R  + +     TLI+++YNANP S
Sbjct: 308 NALTAAAVGRAVGLGPQAIARALSQAEPA----SRWRMEVTELANGVTLINDAYNANPHS 363

Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----- 406
           MKAA+  LS I   G GRR  AVLG+M E+G+ + + H  +  ++    +  + +     
Sbjct: 364 MKAALHSLSTI---GRGRRTWAVLGEMAELGDEATAAHDQIGRLVVRLGVDRLLVVEGPG 420

Query: 407 SGFHVLALKDALPRSIHV------------HYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +           PR++H+                 +D     +   L  GDVV+VK+S S
Sbjct: 421 AATGAAVGGRTAPRALHLGAHLEGSWGGESELVPDVDDAVAILLDELEPGDVVLVKASRS 480

Query: 455 CGFYRLINLLLE 466
            G  R+   L+E
Sbjct: 481 AGLERVALRLIE 492


>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 498

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 181/405 (44%), Gaps = 72/405 (17%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFI--------------------LHAVQKGAGLVVVN 71
           +DSR +AP + FFA+ G   DGHDF+                      A++ G GL+VVN
Sbjct: 31  VDSRKVAPGDVFFALPGEKVDGHDFVPAALAAGAACAVVRRIDDGWTAALRPGQGLIVVN 90

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                             D L AL   A   R +    +IA+TGS GKT+TK++L  A+ 
Sbjct: 91  ------------------DGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTKDLLAAAVG 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           + +      G++NN IG+PLTL  +       I E+GM   G+I  L  + RP + ++T 
Sbjct: 133 AQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALIVEMGMRGKGQIAALCRIARPDVGLLTN 192

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGIKT--- 246
           I P H+     +E IA AK E+ + L   G   +N +D     E L ++   +   T   
Sbjct: 193 IGPVHMELLGSMEAIARAKGELLQSLSDKGKAVVNGEDRQVVAETLSSRCPVVYAGTSPE 252

Query: 247 -----IYSFGKSKNADFQ---LRKWKQCSEQS---------WMEVQLQG---KSMEVVHH 286
                + + G +  A  Q     + +   EQ          ++  Q  G    + E +  
Sbjct: 253 ALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYEESTFEFLLP 312

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDE 344
             G H   N L+ L     +  D   A   L+       R +  R  CA+     TLI++
Sbjct: 313 LPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSLRWETRRFDCAV-----TLIND 367

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +YNANPA+M AA++  ++++  G  R +AVLGDM E+G  +  +H
Sbjct: 368 AYNANPAAMSAALTTAAELA--GPSRLVAVLGDMYELGPEAAEYH 410


>gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
 gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
          Length = 468

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 192/450 (42%), Gaps = 32/450 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR++   + F A+KG  +D HDF+     +          +  +   +++P+    
Sbjct: 29  VSTDSRTVGAGDLFVALKGERFDAHDFLADVAAR----GAAAALVAQAPAGVALPMIVGG 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           +   +L  LA   R R    ++A+TGS GKTT KEM+     A        A  G+ NN 
Sbjct: 85  ETRASLGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  L  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLTAAHRLAVIELGMNHPGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +    I         +    Q+      
Sbjct: 205 ALEHAAVIHALPPDGVAVFPADDAYASIWRVAATGNRILDFALHDDERQTAAQVAGRLHG 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   + +     ++ V    +G H A+N L            +    + L  F P +GR
Sbjct: 265 GE---LAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVALSAIKQGLESFEPVKGR 321

Query: 327 GK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384
            + R   A +    T++D++YNANP SM+AAI VL +Q +P     R+ V+GDM E+G+ 
Sbjct: 322 LQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RVLVIGDMGEVGDE 376

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSL 441
             +FH ++        I  ++       AL DA  R     Y E     D +   + + L
Sbjct: 377 GPAFHREVGAYARERGIDALF-------ALGDA-SRDACAAYGEAARHFDDVGTLVDALL 428

Query: 442 VDG----DVVVVKSSNSCGFYRLINLLLEE 467
             G      V+VK S      R+++ L  +
Sbjct: 429 AAGYGAEASVLVKGSRYMKMERVVDALTNQ 458


>gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
 gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
          Length = 533

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/483 (26%), Positives = 207/483 (42%), Gaps = 82/483 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88
           +  DSR++ P   F A+ G   DGHD    AV  GA  V+    + V +I  ++ PV   
Sbjct: 34  VEFDSRAVGPGGLFLALPGARTDGHDHAESAVAAGAVAVLAARPVGVPAI--VAPPVDAA 91

Query: 89  DDVLGALNKLA----------------------VAARLRSKATIIAITGSVGKTTTKEML 126
           D + G L   A                      VA  L    TI+ ITGS GKT+TK+++
Sbjct: 92  DALAGVLEHDADGSGAAVLAALAKLARAVAAELVAGGL----TIVGITGSSGKTSTKDLV 147

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+ + +  A  GS+NN +G P T+ R   D D+ + E+   H G I  L  +  P +
Sbjct: 148 AAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTDYLVLEMSARHPGNIAALAEIAPPAV 207

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +  AHL  F   E IA  K+E+ + +  +G + LN DD     +   + A  ++ 
Sbjct: 208 GVVLNVGTAHLGEFGSREAIARTKSELPQSVPASGVVVLNVDDPTVAAMAEVTAARVVRV 267

Query: 247 IYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQ 294
             +   ++  +D     W      S  E+   G ++   H G            G H   
Sbjct: 268 SRAEHTEAGPSDV----W--AGPVSLDELARPGFTLYHSHAGGTRQARVQLGVSGDHQVG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +     A V+  + AL+   P      R + +      T+ID++YNANP SM+
Sbjct: 322 NALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQVSTRGDGVTVIDDAYNANPDSMR 379

Query: 355 AAISVLSQIS-----PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A +  L+ I+     P    RR  AVLG+M E+G+ + + H  +  +    ++S + + G
Sbjct: 380 AGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVG 439

Query: 409 FHVLALKDALPRSIH-VHYSETMDG-----------------LFLFIQSSLVDGDVVVVK 450
                      RS+  +H+   M+G                     +++ L  GDVV+VK
Sbjct: 440 TG---------RSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLVK 490

Query: 451 SSN 453
           +SN
Sbjct: 491 ASN 493


>gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 4207]
          Length = 510

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 204/490 (41%), Gaps = 73/490 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+I P   F A+ G   DGHD    AV  GA +V+    +   + ++ +P     
Sbjct: 34  VEFDSRAIGPGGLFLALPGARADGHDHAASAVAAGAAVVLAARPV--GVPAIVVPPVAAP 91

Query: 90  DVLGAL-------------------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +VL  +                        A  +    TII ITGS GKT+TK+++   L
Sbjct: 92  NVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVL 151

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + + +  A  GS+NN +G P T+ R     D+ I E+   H G I  L  +  P I V+ 
Sbjct: 152 APLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVL 211

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL  F   E IA  KAE+ + +  +G + LN DD     + AK   L    +   
Sbjct: 212 NVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVARV 267

Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305
            +    D     W       E +     L     +  V  G+ G H   N L    +   
Sbjct: 268 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 323

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364
             A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+ 
Sbjct: 324 CGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 381

Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            P    R  AVLG+M E+GE + + H  +  +    ++S + + G           RSI 
Sbjct: 382 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSIS 432

Query: 424 -VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCGF 457
            +H+   ++G +   +++                         L  GDVV+VK+SN+ G 
Sbjct: 433 AMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGL 492

Query: 458 YRLINLLLEE 467
             + + L+ +
Sbjct: 493 GAVADALVAD 502


>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 528

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 197/485 (40%), Gaps = 47/485 (9%)

Query: 20  GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           G  P   V G +  DSR +     F A+ G   DGH++   A+ +GA  V V       +
Sbjct: 44  GAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGA--VAVLAARPVDV 101

Query: 79  GSLSIPVFGVDD----------------VLGALNKLA-------VAARLRSKATIIAITG 115
            S+ +P     D                V+ AL+KLA       V A      T++A+TG
Sbjct: 102 PSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLAVGAH---DLTVVALTG 158

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT+TK+ +   LS    T A  GS+NN +G+P T  R      + + E+    +G I
Sbjct: 159 SAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTTHTRYLVAEMSARGIGHI 218

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFF 232
             L  +  P I  +  +  AHL  F     IA AK E+ E L      G   LN DD F 
Sbjct: 219 AHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGELVEALPAAADGGVAVLNADDPFV 278

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-----QSWMEVQLQGKSMEVVHHG 287
             +  ++ A     + +F  +       + W    E     ++   +     S  V    
Sbjct: 279 AAMAPRTTA----RVVTFSTANPPAPGAQYWAGDLELDDVARASFTLHTPRGSWPVSLQV 334

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L    +      D  T +  LS          R          T+I++SYN
Sbjct: 335 FGEHQVANALAAAAVAIEAGVDETTVVSGLSSH--AAASAHRMDVRTRPDGVTVINDSYN 392

Query: 348 ANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ANP SM+A ++ L+   S   +    AVLG M E+G+ +   H  L   L+ Y++  +  
Sbjct: 393 ANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEHRALGAELAKYHVERLIA 452

Query: 407 SG--FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            G   +  AL++ A    +              ++  + DGDVV+VK+SN+   +R+   
Sbjct: 453 VGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDVVLVKASNADQLWRVAEE 512

Query: 464 LLEEF 468
           L   F
Sbjct: 513 LHAMF 517


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 206/448 (45%), Gaps = 30/448 (6%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--- 87
           DSRS+  P+E  FFA++    DGH++I    ++G    VV       +   +  +FG   
Sbjct: 30  DSRSLCFPEETLFFALRSNRNDGHNYIPELYRRGVRCFVVE-----EVPERAAELFGNAN 84

Query: 88  ---VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V     AL +LA   R      I+ ITGS GKT  KE L   LS          SYN
Sbjct: 85  FLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++  +      G+FE G+S  GE++ L  +++P IAV+T I  AH  NFS  E
Sbjct: 145 SQIGVPLSVWLLNSHSQLGVFEAGISQKGEMQALHDIIKPTIAVLTNIGSAHEENFSTPE 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  +FEG E    +  N DD+    +  +++  G    +S   S  A F  +  K
Sbjct: 205 EKCREKLRLFEGAE---IMVYNADDALVTHVLNETNNGGQHLAWSTKSSDAAMFVTKIDK 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           Q +  +   +   G+        I      N ++   +   L  D  T  + +S   P  
Sbjct: 262 QPTHTTIHYIYKGGEPASYSLPFIDEASVCNSIICATVCLHLGLDAHTIGERISKLEPVA 321

Query: 325 GRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R  + +G    TLI++SYN++  S+  A++ +++   H   +R  VL D+ + G
Sbjct: 322 -----MRLEVKEGLNGCTLINDSYNSDINSLDIALNFMNRRPDHNGQQRTLVLSDILQSG 376

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                 + +++ ++    +      G  + A K+ +  +   H+  ++D    FI+SS+ 
Sbjct: 377 LPDAELYREVSSLVEQRGVQKFIGIGPKICANKECIALA-EQHFFASVDE---FIRSSVF 432

Query: 443 DG---DVVVVKSSNSCGFYRLINLLLEE 467
            G   +VV++K + S GF +L  L++++
Sbjct: 433 KGLHNEVVLLKGARSFGFDQLTELMVKK 460


>gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
 gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
          Length = 463

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 209/457 (45%), Gaps = 48/457 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G    +      ++ +  +    
Sbjct: 32  SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF+ N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQSIAFEKSKI---IGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +    K  S        L+GK S + V+ G  Y      ++ LG  +I  A     +   
Sbjct: 262 ESLNIKSFS-------FLEGKFSYDFVYKGFEYS-----ILLLGRHNIFNAIGCINLALF 309

Query: 318 SVFHPKEGRGKRYRCALNQGF--------FTLIDESYNANPASMKAAISVLSQISPHGEG 369
                KE R      A  +G         + ++++SYN N  S  A  +++  +    +G
Sbjct: 310 LGMREKEIREGLIETAFQKGRAEILTKNGYLILNDSYNGNMDSFMALKNMILDLDI--QG 367

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYS 427
           ++  VLG   E+GE S   H DL +     N   ++L G   L ++  + L      ++S
Sbjct: 368 KKFMVLGSFKELGEFSYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKCLYYFS 427

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           E  D    F   SL     +V+K S      R++N +
Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 461

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 177/384 (46%), Gaps = 28/384 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFG 87
           +++DSR +   + F A++G   DGH F+  A+ +GA  ++V    +  I  G        
Sbjct: 30  VALDSREVLSGDLFVALRGNRTDGHAFVGQALSRGARCLLVEISKLEEIRPGLGGASCLA 89

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL ++A          ++ ITGSVGKTTT+E++   L    K +    SYN  I
Sbjct: 90  VPDPELALAEMASHWLKLVSPVVVGITGSVGKTTTREVILSLLGRRFKVHGSPKSYNTLI 149

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+  T+  M    D  + E G S  GEI  L     P   VIT +APAHL     ++ + 
Sbjct: 150 GLSATVMGMDRGCDNLVLEYGTSSFGEISKLVSYFPPDEMVITEVAPAHLERLRDVQGVL 209

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRK---- 262
            AK EI   LE     FL+Y ++  +LL       G+ T+   G   +  D ++      
Sbjct: 210 RAKLEI---LESQRGRFLSY-NADNDLLWGAVTGGGL-TVQRMGVGVRRGDVRISDRRIV 264

Query: 263 WKQCSEQSWMEVQLQGKSMEVVH-----HGIGYHMAQNMLMTLGI-VSILTADVDTAIKA 316
           W     +    +    + +EV       HG  Y +A + +M L   V  L  +V      
Sbjct: 265 WGDDGPRLNFNLHHGDRQLEVSSGLWPLHG-AYPLALSWVMALRFGVEDLFPEVAYG--- 320

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              F P +GRG+  R    +G + L+DESYNANP SM  AI    +++  G  R  AVLG
Sbjct: 321 ---FKPVKGRGRAIRS--REGGW-LMDESYNANPTSMFGAIDSTLELARGGSMRPQAVLG 374

Query: 377 DMCEMGELSQSFHIDLAEVLSLYN 400
            M EMGE S  +H  + + L+ + 
Sbjct: 375 GMLEMGEDSSLWHRRIVDRLNGFQ 398


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 204/448 (45%), Gaps = 30/448 (6%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--- 87
           DSRS+  P+E  FFA++    DGH++I    ++G    VV       + + +  +FG   
Sbjct: 30  DSRSLCFPEETLFFALRSNRNDGHNYISELYRRGVRCFVVE-----EVPARAAELFGDAN 84

Query: 88  ---VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V     AL +LA   R      I+ ITGS GKT  KE L   LS          SYN
Sbjct: 85  FLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++  +      GIFE G+S  GE++ L  +++P+IAV+T I  AH  NF+  E
Sbjct: 145 SQIGVPLSVWLLNSHSQLGIFEAGISQKGEMQALHDIIKPNIAVLTNIGSAHEENFATPE 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  +FEG E    +  N DD     +  +++  G +  +S      A F  +  K
Sbjct: 205 EKCREKLRLFEGAE---VMVYNADDDLVTRVLNETNNKGERLAWSTKSPNAAMFVTKIDK 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           Q +  +   +   G+        I      N ++   I   +  D  T  K +    P  
Sbjct: 262 QPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVVCATICLHVGLDAHTIDKRMRRLEPVA 321

Query: 325 GRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R  + +G    TLI++SYN++  S+  A+  +++   H   +R  VL D+ + G
Sbjct: 322 -----MRLEVKEGLNGCTLINDSYNSDINSLDIALDFMNRRPDHNGQQRTLVLSDILQSG 376

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                 + +++ +     +      G  + A K+++ R    H+  +++    FI+S + 
Sbjct: 377 LPDAELYKEVSSLAEQRGVQKFIGIGPKICANKESI-RLAERHFFASVED---FIRSDVF 432

Query: 443 DG---DVVVVKSSNSCGFYRLINLLLEE 467
            G   +VV++K + S GF +L  L++++
Sbjct: 433 KGLRNEVVLLKGARSFGFDQLTELMVKK 460


>gi|218659512|ref|ZP_03515442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           IE4771]
          Length = 156

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           IDESYNANPASM+AAI++L+   P G GRRIAVLGDM EMGE ++  H DLA  L    I
Sbjct: 17  IDESYNANPASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGI 76

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            HVWL+G  + ALK++LP S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++
Sbjct: 77  EHVWLAGADMAALKESLPESVHVEYREKTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIV 136

Query: 462 NLLLEEFPAI 471
             LL++FP I
Sbjct: 137 AALLDKFPGI 146


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 173/375 (46%), Gaps = 9/375 (2%)

Query: 24  QGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           Q  ++ I  DSRS+  P+E  FFA+K    DGH +I     +G    VV           
Sbjct: 21  QASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYARGVYNFVVAEVPEEMKNCT 80

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +    V +VL AL +LA   R + +  +I ITGS GKT  KE L   LS  K+      
Sbjct: 81  DVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSNGKTVVKEWLYQLLSPDKRIIRSPR 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           SYN+ IGVPL++  M    + GIFE G+S +GE+  L  ++RP I V+T I  AH  NFS
Sbjct: 141 SYNSQIGVPLSVWMMDEHTELGIFEAGISEMGEMETLEPIIRPTIGVLTNIGGAHQENFS 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +++    K  +F   ++   I  N D+       +KS     +  +S    +   F + 
Sbjct: 201 SLQDKCMEKLLLF---KECDVIVYNGDNELIRDCVSKSLFTAREIAWSMKDPERPLF-IE 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K ++ +  + ++ +  G   E     I     +N L  L +   L    +   + ++   
Sbjct: 257 KIEKDAAGTTIKYRYLGFFKEFRIPYIDDASIENSLHCLAVALYLMVPTEVIAERMAHLE 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P      R      +    LI++SYN++ AS+  A+  +++ S     RR  +L D+ E 
Sbjct: 317 PV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARRSEDKARRRTLILSDILET 373

Query: 382 GELSQSFHIDLAEVL 396
           G+  +  +  +AE++
Sbjct: 374 GQPGKLLYRQVAELV 388


>gi|254821976|ref|ZP_05226977.1| hypothetical protein MintA_18732 [Mycobacterium intracellulare ATCC
           13950]
          Length = 419

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 172/392 (43%), Gaps = 61/392 (15%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           VA  LR    I+ ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R   +
Sbjct: 29  VAGGLR----IVGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATPE 84

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            DF + E+   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + + +
Sbjct: 85  TDFLVLEMSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIAQTKSELPQSVPE 144

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----- 274
           +G + LN DD     +   + A  ++   +   S     QL  W      S  EV     
Sbjct: 145 SGVVILNADDPAVAAMAGVTAARVVRVSRAENTSAGPS-QL--W--AGPVSLDEVARPCF 199

Query: 275 -----QLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                   G +   V  G+ G H   N L    +     ADVD    AL+   P      
Sbjct: 200 TLHHRDASGTTQAQVRLGVYGDHQVTNALCAAAVALECGADVDQVAAALAGAGPV----S 255

Query: 329 RYR--CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-------RRIAVLGDMC 379
           R+R          T+ID++YNANP SM+A +  L+ I+ HG G       R  AVLG+M 
Sbjct: 256 RHRMHVTTRADGVTVIDDAYNANPDSMRAGLQALAWIA-HGGGDRPAEKRRSWAVLGEMA 314

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQ 438
           E+GE + + H  +  +    ++S + + G           RS+  +H+   M+G +    
Sbjct: 315 ELGEDAIAEHDRIGRLAVRLDVSRLVVVGSG---------RSMSAMHHGAVMEGSWGSAD 365

Query: 439 SSLVD-----------------GDVVVVKSSN 453
              V+                 GDVV+VK+SN
Sbjct: 366 KGAVNVADGEAALALLRAELQPGDVVLVKASN 397


>gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
 gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
          Length = 449

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 191/445 (42%), Gaps = 31/445 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S D+R+I P   FFA++G  +D HDFI  AV  GA  +VV   +   +  + +P   
Sbjct: 24  DGVSTDTRAIRPGSLFFALRGDRFDAHDFIADAVGGGAAALVVERRIDTPLPQIIVP--- 80

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144
             D   AL   A A R +    +IA+ GS GKTT  +M+   L++    ++  A  G+ N
Sbjct: 81  --DGRRALGAAAAAWRAQFDVPLIAVAGSNGKTTVTQMIAAILAAAFGEERRLATRGNLN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N +G+PL L  +       + ELGM+H GEI +L +L RP +A++T     H    + +E
Sbjct: 139 NDVGLPLMLFELKAGHRIAVLELGMNHPGEIAYLANLARPTVALVTNAQREHQEFMASVE 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
             A     +   L   GT     DD    + +  +   G + +  F +   A      ++
Sbjct: 199 ATAHENGSVIAALPTDGTAVFPADDPCAGIWRKLA---GTRRVIDFARRGTATVS-GTFR 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +  + + +       +      G H   N L             +   + L  F P  
Sbjct: 255 TSAGFAEVSITTPAGCWQANLPLAGEHNVHNALAATAAALAAGVPPEAIRRGLESFRPVA 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG + R         LID++YNANP S++AAI VL+         RI  LGDM E+G  
Sbjct: 315 GRGVQLRTRTGA---RLIDDTYNANPDSVRAAIDVLAGFPQP----RILALGDMGEVGVH 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQS 439
              FH ++       +I         +LAL +    ++       H+  TMD L   + S
Sbjct: 368 GPEFHREIGRYARERDID-------TLLALGELSSETVRTFGTSGHHFGTMDELIAALAS 420

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
           +      ++VK S      R +  L
Sbjct: 421 ADRPEATLLVKGSRFMQMERAVKAL 445


>gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 211/445 (47%), Gaps = 32/445 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I IDSR ++  + F  +KG   DG+DF+  A+ KGA LV  +             V  VD
Sbjct: 19  IVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFDDQ------RVLRVD 72

Query: 90  DVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D    L + A +   +SK +  I ITGS GKTTTKE+ +  LS + + +   G+ N  IG
Sbjct: 73  DTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGNLNTEIG 132

Query: 149 VPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +PL+L    R      +G+FE G S  G+I  L  +V+P IAV+  +  AH+ NF  I+E
Sbjct: 133 LPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVLLNVGSAHVGNFKDIDE 192

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +   K  IF+    +  +    D    E L+  S  L ++ +  FGK ++ DF +  +  
Sbjct: 193 LLQEKLSIFKSKRLSRAVLGGCD----ERLREFSKGLPVEVLL-FGK-EDVDFSIVDFAY 246

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               + +     G    V   GI  +     L+ LG   ++   V     ++ +   K  
Sbjct: 247 DKGDTMLHFFCDGDRF-VRLRGIWSY---GQLLDLGAAYLVARLVGVEEPSVFLNDYKLP 302

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R+  ++ +G  T+I + YN++  S ++AI  + ++      R+IAV G + E G   
Sbjct: 303 FSDRFTVSILKG-ITVISDFYNSSLESWESAILSIEKLRSS---RKIAVAGSILEQGREE 358

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +  H  L E+LS ++ + ++     +  A K+  P  +    S++ + +  ++  ++  G
Sbjct: 359 KRTHERLGELLSKFDETVLFTRDMAINAASKNVKPALV----SDSEEEIAAWLHRNVRSG 414

Query: 445 DVVVVKSSNSC---GFYRLINLLLE 466
           D+V  K+S +    G Y+    L+E
Sbjct: 415 DLVFFKASRAIALEGVYKSFMELIE 439


>gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
 gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
          Length = 525

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 138/513 (26%), Positives = 211/513 (41%), Gaps = 73/513 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF----VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +T  ++ + + G  + I PQ      V G +  DSR++ P   F A+ G   DGHD    
Sbjct: 4   YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAS 63

Query: 60  AVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLA------------------- 99
           AV  GA  V+    + V +I     P    D + G L   A                   
Sbjct: 64  AVAAGAVAVLAARPVGVPAIVVSPEPDVTADALTGVLEHDADGSGAAVLAALAKLAKAVA 123

Query: 100 ---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
              VA  L    TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R 
Sbjct: 124 AELVAGGL----TIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRA 179

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + 
Sbjct: 180 TRGTDYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQA 239

Query: 217 LEKTGTIFLNYDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSW 271
           +  +G + LN DD    +  E+  A+   +G  T    G +   D     W    S    
Sbjct: 240 VPASGVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDV----WAGPVSLDRL 295

Query: 272 MEVQLQ---GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              Q     G +   V  G+ G H   N L    +     A V     AL+   P     
Sbjct: 296 ARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPVS--R 353

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---------------RRI 372
            R + +      T+ID++YNANP SM+A +  L+ I+  GE                R  
Sbjct: 354 HRMQVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIA-RGEAESTAASQPGVRPQSRRSW 412

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHV 424
           AVLG+M E+G  + + H  +  +    ++S + + G        +H   ++ +       
Sbjct: 413 AVLGEMAELGADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAMYHGAVMEGSW--GTEA 470

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 D     +++ +  GDVV++K+SNS G 
Sbjct: 471 VSVPDRDAALALLRAEIQPGDVVLIKASNSAGL 503


>gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
          Length = 470

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 203/443 (45%), Gaps = 43/443 (9%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV----- 88
           SR   P   + A  G   DGHD+   AV             VA +GS   PV GV     
Sbjct: 36  SRDCVPGSLYVARLGEFADGHDYAPAAVA---------AGAVAVLGSR--PVEGVATVVV 84

Query: 89  DDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           DDV  A  ++A     R+ +  I+ ITGS GKT+TK++L   LS+  +T A + S N  I
Sbjct: 85  DDVQTAFGQVARGVVDRAPELRIVGITGSSGKTSTKDLLAAVLSTAGETVAPVNSLNGEI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+ R+     F + E+G   +G I +LT +  P +A++  +  AH+  F     IA
Sbjct: 145 GVPLTVCRVTPTTRFLVAEMGARGIGHIDYLTRIAPPDVAIVLNVGTAHVGEFGSRANIA 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265
           +AK+E+   +   G   LN DD    L+ A +  L  + +   G+S  A+ +       +
Sbjct: 205 AAKSELPRAVRPGGLSILNADDP---LVAAMAGGLASR-VQLVGQSPEAEVRAEATILDE 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               ++  V  +G++   +     +H+  ++ +    + +       A  ALS   P   
Sbjct: 261 LGRAAYDLVTPRGRARVSLRLSGAHHVGNSLAVAAAALELGLPLAQVA-AALSGAVPA-- 317

Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              R+R  + +      +++++YNANP SM+AA+  L+ I+  GE  R AVLG+M E+G 
Sbjct: 318 --SRWRMEITERPDGVVIVNDAYNANPDSMRAALDALAAIATTGE--RWAVLGEMLELGS 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
             +  H  +    +   I HV     G  V    D +P          +D     + S L
Sbjct: 374 DREREHAAIGSYAAGLGIDHVVAVGDGARVYDAPDWVP---------DVDAAHDHLASRL 424

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             GDVV++KSS   G   L + L
Sbjct: 425 RPGDVVLLKSSRDSGLRWLGDRL 447


>gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
 gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
          Length = 463

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 213/456 (46%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G    + + D     +  +    
Sbjct: 32  SLDSREINGDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  DV+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSDVIKLLQTLASVLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMELLSQILKPEIVIITNINYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEKNDYCAYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S        L+GK S + V+ G  Y +      N+   +G +++   L    
Sbjct: 262 ENLNIKSFS-------FLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIREGLIETTFQKGRAE----ILIKNGYLILNDSYNGNMGSFIALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSE 428
           +  VLG   E+GE +   H DL +     N   ++L G   L ++  + L      ++SE
Sbjct: 369 KFIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRYSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERVLNYI 463


>gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
 gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
          Length = 463

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 214/455 (47%), Gaps = 44/455 (9%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G    + + D     +  +    
Sbjct: 32  SLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     R+    IAITGS GKTTTKE+L   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGISYVGEMDLLSQILKPEIVIITNISYAHMQAFR 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
           G++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        D+
Sbjct: 212 GLQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDY 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S         +GK S + V+ G  Y +      N+   +G +++   L    
Sbjct: 262 ENLNIKSFSFS-------EGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIREGLIETTFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
           +  VLG   E+GE +   H DL +     N   ++L G   L ++D+      +++Y   
Sbjct: 369 KFIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVGKYLYYFSE 428

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D    F   SL     +V+K S      R++N +
Sbjct: 429 FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 329

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 7/249 (2%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIP 84
           GI+ D+R +   + F A++G  +DG DF   A++ GA  V+    V+      +      
Sbjct: 30  GITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTPGA 89

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V GV D L A  ++A A R++    ++A+TGS GKTTTKE+   ALS          +YN
Sbjct: 90  VIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRTAANYN 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PLTL  M  +    + E+GM   G+I  L  +  P + ++T +   H+     IE
Sbjct: 150 NEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIVTNVGETHMELLGSIE 209

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+E+ E +   G + LN DD+    ++A++ A G++ I ++G    AD + +  +
Sbjct: 210 NIARAKSELVEAIAPGGIVILNADDARVAAMRAQA-ADGVR-ILTYGIRAKADIRAQALR 267

Query: 265 Q-CSEQSWM 272
             C+E  +M
Sbjct: 268 SACNETRFM 276


>gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
 gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
          Length = 306

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 16/317 (5%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP + +  I E+GM H  EI FL++L +P +A IT I  AH+ N      IA AK EI +
Sbjct: 1   MPDETEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVD 60

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           GL K G++F+  D+   E L  K      + + +FG S+ +  Q     +  EQ+  ++ 
Sbjct: 61  GLAKDGSLFVPSDEPLLEPLVEKV----TQQVITFGFSQESQLQGIVTNEAKEQTSFKI- 115

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                M       G +   N L+ +GI            K L+     + R +  + A  
Sbjct: 116 -SDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAA-- 172

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++ + YNANP +M   +   S++S    G+RIAVLGDM E+G  S + H  +A+ 
Sbjct: 173 -NGAEILSDVYNANPTAMGLVLDSFSKMSKV--GKRIAVLGDMLELGPDSAAMHQAMAQH 229

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           L+   I  V+L G  +  L D L  +     IH    E  + L   ++  L   D+VV+K
Sbjct: 230 LAPDAIEEVFLYGSEMAYLADKLQETYASANIHSFKKEEKNELIEAVKKVLQPEDMVVLK 289

Query: 451 SSNSCGFYRLINLLLEE 467
            SN  G   +I+ LLE+
Sbjct: 290 GSNGMGLREVIDALLEK 306


>gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
 gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
          Length = 525

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 164/381 (43%), Gaps = 41/381 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 132 TIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATRSTDYLILEMS 191

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +G + LN D
Sbjct: 192 ARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQAVPASGVVILNAD 251

Query: 229 D----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQ---GKS 280
           D    +  E+  A+   +G  T    G +   D     W    S       Q     G +
Sbjct: 252 DPAVAAMAEVTAARVVRVGRATATGAGWAGPGDV----WAGPVSLDRLARPQFTMHAGDA 307

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V  G+ G H   N L    +     A V     AL+   P      R R +      
Sbjct: 308 AAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPVS--RHRMRVSTRPDGV 365

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEG---------------RRIAVLGDMCEMGEL 384
           T+ID++YNANP SM+A +  L+ I+  GE                R  AVLG+M E+G  
Sbjct: 366 TVIDDAYNANPDSMRAGLQALAWIA-RGEAESTAASQPGVRPQSRRSWAVLGEMAELGAD 424

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLF 436
           + + H  +  +    ++S + + G        +H   ++ +             D     
Sbjct: 425 AITEHDHIGRLAVRLDVSRLVVVGTGRSMSAIYHGAVMEGSW--GTEAVSVPDRDAALAL 482

Query: 437 IQSSLVDGDVVVVKSSNSCGF 457
           +++ +  GDVV++K+SNS G 
Sbjct: 483 LRAEIQPGDVVLIKASNSAGL 503


>gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 510

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 203/481 (42%), Gaps = 55/481 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+I P   F  + G   DGHD    AV  GA +V+    +   + ++ +P     
Sbjct: 34  VEFDSRAIGPGGLFLRLPGARADGHDHAASAVAAGAAVVLAARPV--GVPAIVVPPVAAP 91

Query: 90  DVLGAL-------------------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +VL  +                        A  +    TII ITGS GKT+TK+++   L
Sbjct: 92  NVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVL 151

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + + +  A  GS+NN +G P T+ R     D+ I E+   H G I  L  +  P I V+ 
Sbjct: 152 APLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVL 211

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL  F   E IA  KAE+ + +  +G + LN DD     + AK   L    +   
Sbjct: 212 NVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVRV 267

Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305
            +    D     W       E +     L     +  V  G+ G H   N L    +   
Sbjct: 268 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 323

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364
             A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+ 
Sbjct: 324 CGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 381

Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALK 415
            P    R  AVLG+M E+GE + + H  +  +    ++S + + G         H   L+
Sbjct: 382 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLE 441

Query: 416 DAL--PRSIHVHYSETM-------DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +A     +   H ++         D     +++ L  GDVV+VK+SN+ G   + + L+ 
Sbjct: 442 EAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVA 501

Query: 467 E 467
           +
Sbjct: 502 D 502


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 164/352 (46%), Gaps = 15/352 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G S DSR     E F A++ P  DGH +I  A+  GA  +V  T    S  +  I    
Sbjct: 29  TGFSYDSRLTGVGELFLALRTPRDDGHAYITDALASGAAGIVCATPPTESANATVI---- 84

Query: 88  VDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           + D    L     A RLR  A  ++ +TGSVGKT+T   +   L+ I  T+    S+N+ 
Sbjct: 85  IADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTSTTRAIAAVLAGIAPTFRSRRSFNSL 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P++LAR+  D  F + E G ++ GE+R LT L  P IAV+T+ +P  LS F  +  +
Sbjct: 145 IGLPVSLARLQDDHRFAVLEYGTAYPGELRRLTTLFPPQIAVVTSASPMRLSAFGSVAGL 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 + E L   G   LN DD     L+A +    +  + +FG     D +    +  
Sbjct: 205 TREFGALVEALPADGWAVLNGDDPTVAALRAVT----LAQVLTFGAGGGCDLRAETLRFG 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + + + +   G S++     +G       L  +G+       ++ A   L+   P  GR
Sbjct: 261 LDGTQVRLSYGGASVDAAIPLLGEPAVGAALAAVGVGLACGMSLEQAAARLAHIEPPAGR 320

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
             R   A N     L+D++  A PA+M AA+  L+ +      RRIAVLGD+
Sbjct: 321 -LRPHPARNGAI--LLDDTVGAEPAAMLAALRTLAALPAR---RRIAVLGDL 366


>gi|215403547|ref|ZP_03415728.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 02_1987]
 gi|289745432|ref|ZP_06504810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
 gi|289685960|gb|EFD53448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
          Length = 463

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 83  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 142

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 143 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 202

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 203 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 254

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 255 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 312

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 313 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 373 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 423

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 424 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 455


>gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 472

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 205/457 (44%), Gaps = 37/457 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR   P   F  + G   DGHDF   AV++GA  V+        +  +++PV  V 
Sbjct: 29  VVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQGAAAVLA----AGPLPGINVPVLVVP 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + AL +LA   R R+KA ++A+TG+ GKTT KE+L   LS   KT     ++NN IG+
Sbjct: 85  DTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLKEVLAQVLSLGGKTARNAMNHNNQIGM 144

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P  +     D  F I E G+S  G++  L  ++RP IAV+      H     G + +A  
Sbjct: 145 PRAVLGTDGDEKFWIMEAGISQQGDMDDLGSVLRPDIAVVLNAGTGHTEGL-GEKGVAWH 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA + + L K G   +  D  + +L++ ++ A      +  G  ++A+F+        + 
Sbjct: 204 KARLLKYLAKGGKGLVCAD--YPDLVR-EARATETDICFFSGSGRDAEFRAVYAGAAPQG 260

Query: 270 SWM---------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + +          + L G+  +V     G + A+N+     +  +L  D+    + L+  
Sbjct: 261 AAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGAENVAAVAAVAHMLGLDLQAIRQGLAQA 320

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMC 379
                R  + +     G + LID++YNANP SM     +L   +    GR  +AVLG M 
Sbjct: 321 RMPAQRFNQVQA----GSWLLIDDTYNANPLSMG---RMLDAAAERAAGRPFVAVLGAML 373

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFI 437
           E+G  +   H  L   L+  N S +   G H   ++  L  + +    +  T  G F+  
Sbjct: 374 ELGSQAAMEHEALGRRLAGLNPSAIVWKGLHAEDVRKGLTLAGYAGPWQVVTDAGEFMKT 433

Query: 438 QSSLVD----------GDVVVVKSSNSCGFYRLINLL 464
             +L D          G VV+ K S S     L+ +L
Sbjct: 434 WQTLQDYGLENKAAKSGGVVLFKGSRSNRLETLVAVL 470


>gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
 gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
          Length = 463

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 213/456 (46%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G    +      ++ +  +    
Sbjct: 32  SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF+ N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQSIAFEKSKI---IGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S        L+GK S + V+ G  Y +      N+   +G +++   L    
Sbjct: 262 ESLNIKSFS-------FLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +     L +  + ++++SYN N  S  A  +++  +    +G+
Sbjct: 315 KEIREGLVETAFQKGRAE----ILTKNGYLILNDSYNGNMDSFMALKNMILDLDI--QGK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSE 428
           +  VLG   E+GE +   H DL +     N   ++L G   L ++  + L      ++SE
Sbjct: 369 KFMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
 gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
          Length = 435

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 55  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 114

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 115 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 174

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 175 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 226

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 227 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 284

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 285 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 344

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 345 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 395

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 396 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 427


>gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis H37Ra]
          Length = 445

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 65  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 124

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 125 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 184

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 185 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 236

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 237 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 294

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 295 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 354

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 355 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 405

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 406 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 437


>gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 427

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 192/450 (42%), Gaps = 81/450 (18%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P  AF A+ G    G+ FI  AV +GA  V+ +     ++         V D  
Sbjct: 33  DSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKAVQ--------VQDPW 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL +L  A R R    ++ +TGSVGKTTTKE L   L+          +   ++  P  
Sbjct: 85  QALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQGLA--------WPAPEGNLNTPPA 136

Query: 153 LAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           LAR    +P      + ELG+  +GE++ L  L +P I V+T IAPAHL     +E +A 
Sbjct: 137 LARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLTAIAPAHLEALGSLEVVAR 196

Query: 209 AKAEIFEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K+++ +   +    T    Y              L +  + ++G               
Sbjct: 197 EKSQLLQASRVRIASTQAARY--------------LSLPEVRTYG--------------- 227

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML--------------MTLGIVSILTADVDT 312
               + E   QG+ + +   G  +   Q  L                L +  +L  D+D 
Sbjct: 228 ----FEEGTFQGRDLTITPEGTRFRYGQRTLHLPYPGYGPALGALAALAVAEVLGQDLDQ 283

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L       GR    R    +G    I ++YNANPAS++A +  L +      GR+I
Sbjct: 284 VCQHLEALRLPPGRMHLVR----RGGVLFIHDAYNANPASVRAGLESLDRFP----GRKI 335

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            VLG M E+G  ++++H++ A + +      V++ G +   +      ++ V  +ET   
Sbjct: 336 VVLGTMKELGPQAEAYHLEAARLAARVAQRAVFV-GEYAPQMARLFEGALAVTDAETARQ 394

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
               +++ +  GDV+ +K+S + G  R++ 
Sbjct: 395 A---LKAQVRPGDVIYLKASRAVGLERVLE 421


>gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi N40]
          Length = 463

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 217/456 (47%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311
           +    K  S        L+GK S + V+ G  Y +      N+   +G +  ++     +
Sbjct: 262 ENLSIKSFS-------FLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             IK  L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  VLG   E+GEL+   H DL +     N   ++L G   L ++D+  L      ++SE
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
 gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
          Length = 439

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 59  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 118

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 119 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 178

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 179 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 230

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 231 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 288

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 289 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 348

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 349 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 399

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 400 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 431


>gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis CDC1551A]
          Length = 431

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 51  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 110

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 111 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 170

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 171 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 222

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 223 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 280

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 281 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 340

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 341 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 391

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 392 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 423


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 201/442 (45%), Gaps = 20/442 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S DSR  AP E F A++ P  DGHD+I  A+  GA  ++ +     S G+    V   DD
Sbjct: 27  SYDSRLTAPGECFVALRTPRADGHDYIPAAIAAGATGILCSWPPADSAGTT---VLLCDD 83

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
               L + A A     + T++ ITGSVGKTT +      L+    T+    S+N+ +G+P
Sbjct: 84  PQTTLLRWASARLAAVQPTVVDITGSVGKTTARRAAAAVLARRAATFQSRRSFNSFLGLP 143

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + +AR+     F + ELG  H GEI  L     P IA++T +  AHL +F  +E IA+ K
Sbjct: 144 IAIARLEDQHRFAVLELGSDHRGEIARLATFFPPKIALVTAVEAAHLRSFGSLEAIAAEK 203

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            ++   L   G   +N D      L  ++ A  I    ++G+ ++ D   R  +   + +
Sbjct: 204 GDLLAALPPKGVAIINGDSPLARALMGRTKAHTI----TYGQGRSCDLSGRGLRYGLDGT 259

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + ++  G  ++V    IG       L  + +      D+   + AL    P  G   R 
Sbjct: 260 LLRLRWCGTEVDVHTPLIGIPGLYAALAGVAVGLACGMDLVDCVAALPHIVPVAG---RL 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-QSFH 389
           R     G   L+D+S++A P +  AA+  L+ +  H   RRIAV+G + ++   S +SF+
Sbjct: 317 RPLPALGGAALLDDSFSAAPPAALAALETLAALPAH---RRIAVVGALSDLPVGSEESFY 373

Query: 390 IDL----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +L    A    L  +   W  G         +  +I V   +T +     +   L  GD
Sbjct: 374 RELGTRAASSTDLLILKGDW--GVVTERAARQINPNIAVQVVDTNEAALAALPPDLGPGD 431

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           +V+VK        R+I  L+++
Sbjct: 432 LVLVKGGAEARMERVIARLVDD 453


>gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
 gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
          Length = 432

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 52  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 111

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 112 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 171

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 172 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 223

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 224 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 281

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 282 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 341

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 342 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 392

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 393 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 424


>gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 392

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 12  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 71

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 72  ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 131

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 132 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 183

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 184 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 241

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 242 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 301

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 302 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 352

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 353 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 384


>gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
 gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
          Length = 464

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 215/456 (47%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S        L GK S + V+ G  Y +      N+   +G +++   L    
Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  VLG   E+GEL+   H DL +     N   ++L G   L ++D+  L      ++SE
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N+ 
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNIF 463


>gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis EAS054]
 gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
 gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
          Length = 391

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 11  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 70

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 71  ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 130

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 131 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 182

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 183 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 240

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 241 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 300

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 301 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 351

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 352 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 383


>gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 454

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 209/461 (45%), Gaps = 48/461 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            +G ++DSR++   E FFA++G   DG DF   A  +GA   V +         L +P  
Sbjct: 26  AHGAAVDSRAVRGGELFFALRG-RLDGADFAPDARARGAVAAVADR-------PLEVPTL 77

Query: 87  GVDDVLGALNKLAV-AARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYN 144
            V+D L AL +LA  + R  + AT++ ITG+VGKTTTK+ L TI  S+ +K  A  G+ N
Sbjct: 78  VVEDPLRALQELARWSLRREASATVVGITGTVGKTTTKDALATILRSAGRKITATQGNLN 137

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PLT+     D +  + E+G +H G+I FL  + RPH+ V+T I+P HL +F  ++
Sbjct: 138 NEIGLPLTVLNAAPDTEVMVLEMGATHPGDIAFLCGIARPHVGVLTAISPVHLDSFGSLQ 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY----SFGKSKNADFQL 260
           ++A  K E+   L +        D +F   +     A+G    +    +FG  + A    
Sbjct: 198 KLAETKGELARSLPE--------DGAFVSPVGVPEAAVGGGRAFGRHITFG-DEGASLWA 248

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              ++  E     V   G+S  V     G H+ + +L   G    L   ++   + LS  
Sbjct: 249 SGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGALALGVALEECARGLSRL 308

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                RG   R   +   +   D+SYNA+PA+M A +   ++ +     R +AVLG M E
Sbjct: 309 RRTGLRGDLLRLRDDILLY---DDSYNASPAAMAAVLRYGARQASSSGRRLVAVLGGMFE 365

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  ++ +H +   + +   +  +   G                 Y+E  DG  +  + +
Sbjct: 366 LGPGAREYHREAGRLAAEVGVDLLVCVGEEA------------GWYAEAFDGEKVLYRDA 413

Query: 441 ----------LVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                     L  GD V+VK S       L   L E    +
Sbjct: 414 GEAARELPHLLRPGDYVLVKGSRGVRLDTLTGRLKESLAVV 454


>gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T92]
 gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
 gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
          Length = 391

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 11  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 70

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 71  ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 130

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 131 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 182

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 183 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 240

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 241 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 300

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 301 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 351

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 352 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 383


>gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T85]
          Length = 384

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 4   TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 63

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 64  ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 123

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284
           D     + AK   L    +    +    D     W       E +     L     +  V
Sbjct: 124 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 175

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G+ G H   N L    +     A V+    AL+   P      R +        T+ID
Sbjct: 176 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 233

Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++
Sbjct: 234 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 293

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440
           S + + G           RSI  +H+   ++G +   +++                    
Sbjct: 294 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 344

Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 345 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 376


>gi|239814044|ref|YP_002942954.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239800621|gb|ACS17688.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1584

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/476 (26%), Positives = 215/476 (45%), Gaps = 36/476 (7%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQG-FVNGI-----------------SIDSRSIAPQEAFF 44
            P+WT   L +   G  +   P G FVN +                 + D  ++A  E + 
Sbjct: 1099 PVWTAEHLQRITGGRWLVEPPPGWFVNSVVRGPRHLPLLPPPALFVAADYDTLAAHENYS 1158

Query: 45   AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                 + D H  +    +K AG VV +   V  +     P+  +DD +  +  L  AAR 
Sbjct: 1159 KRLPGNPDRHADLPSLEKKLAGAVVAHA--VEGLAP-DFPLLQLDDPIRGMIALGEAARA 1215

Query: 105  RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            R K  ++ +TG+VGK++T  ML   L    + +  + +YN+ +GVP  LA +  D D  I
Sbjct: 1216 RFKGLVVGVTGTVGKSSTIAMLRDLLPEAARVHTTVDNYNSRVGVPAMLANLGPDADVCI 1275

Query: 165  FELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-T 222
             E+  S L   R  ++ + RPH+A+IT +  +     S +E+ A+ K+ IF GLE  G  
Sbjct: 1276 LEMAQSGLWMDRGPISLMARPHVAIITEVGLSQTRQASTLEQTAAFKSRIFLGLEPGGVA 1335

Query: 223  IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSM 281
            I  ++     ++++A   AL    I+  G   +A+ + L    +      + +  +G+S 
Sbjct: 1336 IVPDHIPCLAQVVRAA--ALTAGAIWVVGPGPDANIRVLDTHPEPGGGCRVRIATEGRSF 1393

Query: 282  EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPK---EGRGKRYRCALNQG 337
            E +       + +N  +    +  +  D D A   +  V  P    + R  R R  +   
Sbjct: 1394 EYLFPIASAGLVRNSALAFAALLAMGFDADAACARMPGVRLPASVMQVRTLRTRAGIEA- 1452

Query: 338  FFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAE 394
              TLID+S+NA   SM+ A+  +       +    R+I VLG +  +G  SQ+ H  LAE
Sbjct: 1453 --TLIDDSWNAEVMSMRNAMEFVRTYRRADDAPVQRKIGVLGRIVNLGRDSQALHRGLAE 1510

Query: 395  VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L    I H+   G  +  L++ +P  +   + +  + L  ++ + L DGD+V++K
Sbjct: 1511 PLLASGIEHLVTHGAEMRWLREDVPAGLLGPHFDDAEKLADYLGTFLRDGDLVLLK 1566


>gi|317508857|ref|ZP_07966496.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
 gi|316252818|gb|EFV12249.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
          Length = 494

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 172/377 (45%), Gaps = 38/377 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TI+ +TGS GKT+TK++L   L++   T    GSYNN +G P T+ R   +  F + EL 
Sbjct: 119 TIVGVTGSSGKTSTKDLLAQVLATKGSTVGPPGSYNNELGHPWTVLRAGPESVFLVLELA 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225
              +G I  L  + RP I V+  +  AHL  F   E IA AK E+ E L   E  G   L
Sbjct: 179 ARGIGHIAALARIARPRIGVVLGVGSAHLGEFGSRENIAIAKGELVEALPSAEDGGVAVL 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKS-ME 282
           N DD     + A++ A     +  +G S++A+ +    +    +   +  +  QG++ +E
Sbjct: 239 NADDPLVLAMAARTKA----RVVRYGMSESAEIRAADVRVDALARPRFTLITPQGEAPVE 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H  G H  Q           L   +  A  A ++   +    +R +         +I
Sbjct: 295 LQVH--GEH--QAHNALAAAAVALECGLSVAQTAEALSRARAASPRRMQVTERADGAVVI 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYNANP SM+A +  L  ++ +  G   AVLG M E+GE S + H    + L  Y + 
Sbjct: 351 NDSYNANPESMRAGLRALVDMADNSGGVSWAVLGPMGELGEDSIALH----DQLGRYAVR 406

Query: 403 HVWLSGFHVLALKDALPRSIH-VHYSETMDGLF--------------LFIQSSLVDGDVV 447
              LS   +L + D+  RS   +H    ++G +                +   L   DVV
Sbjct: 407 ---LSVKRLLVVGDS--RSAKALHTGAVLEGSWSGEAELVSDWSQAARIVADELGPRDVV 461

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK+S S G +++   L
Sbjct: 462 LVKASQSEGLWQVAESL 478


>gi|108800226|ref|YP_640423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. MCS]
 gi|119869354|ref|YP_939306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. KMS]
 gi|126435849|ref|YP_001071540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium sp. JLS]
 gi|108770645|gb|ABG09367.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. MCS]
 gi|119695443|gb|ABL92516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. KMS]
 gi|126235649|gb|ABN99049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium sp. JLS]
          Length = 497

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 168/379 (44%), Gaps = 45/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     DF + E+  
Sbjct: 130 IVGITGSSGKTSTKDLVAAVLAPLGEVIAPPGSFNNELGHPWTVLRADRSTDFLVLEMSA 189

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            H G I  L  +  P IAV+  +  AHL  F   E IA+ K+E+ + + ++G + LN DD
Sbjct: 190 RHPGNIAALAAIAPPSIAVVLNVGTAHLGEFGSREAIAATKSELPQAVPESGVVILNADD 249

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC---SEQSWMEVQLQGKSMEV--- 283
           S    +   + A     +    +   AD     W       E +     L     EV   
Sbjct: 250 SAVAAMAEVTAA----RVVRVSREPGADI----WADAVTLDELARPRFTLHAAGGEVPVN 301

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             VH   G H   N L    +     A +D    AL+   P      R +    +   T+
Sbjct: 302 LAVH---GDHQVSNALCAAAVALECGATLDQVAAALAGAGPVS--RHRMQVTTREDGVTV 356

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ++++YNANP SM+A +  L+ +S  G  +R   AVLG+M E+G+ S S H  +  +    
Sbjct: 357 VNDAYNANPDSMRAGLKALAWMSRGGAAKRRSWAVLGEMAELGDDSISEHDSIGRLAVRL 416

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--------------LFIQSSLVDGD 445
           ++S + + G    A          +H    M+G +                +   L  GD
Sbjct: 417 DVSRLVVVGTGRSASA--------MHQGAVMEGSWGAEATRVDDADAALALLSDELQPGD 468

Query: 446 VVVVKSSNSCGFYRLINLL 464
           VV+VK+SNS G   L + L
Sbjct: 469 VVLVKASNSAGLGALADSL 487


>gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 463

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 216/456 (47%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVS--ILTADVD 311
           +    K  S        L GK S + V+ G  Y +      N+   +G ++  +     +
Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             IK  L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  VLG   E+GEL+   H DL +     N   ++L G   L ++D+  L      ++SE
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi 80a]
          Length = 463

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 48/457 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311
           +    K  S        L+GK S + V+ G  Y +      N+   +G +  ++     +
Sbjct: 262 ENLSIKSFS-------FLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             IK  L     ++GR +     L +  + ++++SYN N  S  A  +++  +    + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLDI--QSK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYS 427
           +  VLG   E+GEL+   H DL  E +S+ N   ++L G   L ++D+  L      ++S
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLILEAISM-NFDKIFLIGEEFLDVRDSENLVEKCLYYFS 427

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           E  D    F   SL     +V+K S      R++N +
Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
 gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
          Length = 463

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 208/455 (45%), Gaps = 44/455 (9%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82
           S+DSR I         +FA +G   DG  F+ + +  G    +      ++ +  +    
Sbjct: 32  SLDSREIKDDNINVSLYFAYRGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  DV+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSDVIKLLQTLASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++  FE+G S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAGFEVGGSYIGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            ++ IA  K++I  + +E   T  +N D   +   +AK     +K +Y        DF+ 
Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVTNEMN-DYCIYLEKRAKIANPNVKIVY-------FDFES 263

Query: 261 RKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              K  S        L+GK S + V+ G  Y      ++ LG  +I  A     +     
Sbjct: 264 LNIKSFS-------FLEGKFSYDFVYKGFEYS-----ILLLGRHNIFNAIGCINLALFLG 311

Query: 320 FHPKEGRGKRYRCALNQGF--------FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              KE R      A  +G         + ++++SYN N  S  A  +++  +    +G++
Sbjct: 312 MREKEIREGLIETAFQKGRAEILTKNGYLILNDSYNGNMGSFIALKNMILDLDI--QGKK 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSET 429
             VLG   E+GE +   H DL +     N   ++L G   L ++  + L      ++SE 
Sbjct: 370 FMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSE- 428

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D    F  +SL     +V+K S      R++N +
Sbjct: 429 FDKFIDFFLNSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi JD1]
          Length = 463

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 218/457 (47%), Gaps = 48/457 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S        L GK S + V+ G  Y +      N+   +G +++   L    
Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYS 427
           +  VLG   E+GEL+   H DL  E +S+ N   ++L G   L ++D+  L      ++S
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLILEAISM-NFDKIFLIGEEFLDVRDSENLVEKCLYYFS 427

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           E  D    F   SL     +V+K S      R++N +
Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
 gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
          Length = 463

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 48/457 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311
           +    K  S        L GK S + V+ G  Y +      N+   +G +  ++     +
Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             IK  L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYS 427
           +  VLG   E+GEL+   H DL  E +S+ N   ++L G   L ++D+  L      ++S
Sbjct: 369 KFIVLGSFKELGELAYKTHKDLILEAISM-NFDKIFLIGEEFLDVRDSENLVEKCLYYFS 427

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           E  D    F   SL     +V+K S      R++N +
Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
 gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
          Length = 508

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 52/472 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSL--SIP 84
           DSR I     F A+ G   DGHDFI  AV  GA + +   D+      V  +G    +  
Sbjct: 33  DSRKIREGSLFLALPGARVDGHDFIDQAVAAGATMALAARDVGQPAVVVKPLGKQDSNAD 92

Query: 85  VFGVDD------VLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            F  D       VL AL KLA   V    + +  ++ +TGS GKT+TK+M+   L +   
Sbjct: 93  AFAHDPDGSGAAVLEALGKLARYVVDELKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGP 152

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           T A  GS+NN IG P T+ +   +  + + E+    +G +  L  +  P I  +  +  A
Sbjct: 153 TVAPKGSFNNEIGHPYTVLQCTPETKYLVAEMSARGIGHVAHLARIAPPTIGAVLNVGTA 212

Query: 196 HLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIY---- 248
           HL  F   E IA AK E+ E L   E+ G   LN DD +   +  ++ A   K ++    
Sbjct: 213 HLGEFGSREVIAQAKGELVEALPAAEQGGVAVLNADDDYVTGMAPRTQA---KVVFFSAD 269

Query: 249 -SFGKSKNADF-----QLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLG 301
            S  +   AD+     QL  + + S     ++ +  G++  +     G H  Q       
Sbjct: 270 ESSERHATADYRATNVQLDDFARAS----FDLHVPDGRTFPIQLQVYGAH--QVANALAA 323

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + + +D    A ++        +R       G   +I++SYNANP SM+A I  L+
Sbjct: 324 IAVAVESGIDAEQVAKAMAAHVAASERRMDVQQLTGNIVVINDSYNANPDSMRAGIDALA 383

Query: 362 QISP---HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
           + +    H +    AVLG M E+G+ ++  H  L E L    I  +   G     H LA 
Sbjct: 384 RTAAGPTHQDASSWAVLGQMGELGDSAEDEHSSLGEYLVGRGIDRLIAVGESSNVHALAD 443

Query: 415 KDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           K      + ++ S   D       + + +   DVV+VK+S + G +R+ + L
Sbjct: 444 K---AEELGLNTSRVPDTSTAADLVAAEVRPDDVVLVKASYADGMWRVADSL 492


>gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
 gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
          Length = 475

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 170/381 (44%), Gaps = 15/381 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++   + F A+KG  +D + F+  A   GA   + +  + A+     +P   V 
Sbjct: 33  VHTDTRTLQAGDLFVALKGERFDANAFLADARAGGAVAAIAHGGLEAA----GLPGIEVP 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147
           D L AL  LA   R +    +I ITGS GKTT  +M+   L + K    ++  G++NN I
Sbjct: 89  DSLAALGALAAGWRAQFGLPLIGITGSNGKTTVTQMVASILRAWKGEAAFSTQGNFNNDI 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+       + E+GM+H GEI  L  + +P +A++      HL     +  +A
Sbjct: 149 GVPLTLLRLRAAHAAAVIEMGMNHPGEIATLAAIAQPTVALVNNAQREHLEFMHTVRAVA 208

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                +   L   G       D +  L  A +     +   +FG   +       W+Q +
Sbjct: 209 EENGSVLAALPADGVAVFPAGDPYSALWGALA---APRRCVTFGAGGDVRCAQASWRQGA 265

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               M   L   S  +     G H   N L          A +++  + LS F P +GR 
Sbjct: 266 WAVEMVTPLGALSCSL--QIAGQHNVTNALAAAACALAAGAPLESIARGLSAFTPVKGRS 323

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     +     T++D+SYNANP SM+AAI VL+ +       ++ V+GDM E+G+    
Sbjct: 324 RAIGLRVADRQVTVVDDSYNANPDSMRAAIDVLASLP----APQLLVMGDMGEVGDQGPQ 379

Query: 388 FHIDLAEVLSLYNISHVWLSG 408
           FH +         I H++  G
Sbjct: 380 FHAEAGAHARAAGIRHLYALG 400


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 200/441 (45%), Gaps = 10/441 (2%)

Query: 30  ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVF 86
           I  DSRS+  P+E  FFA+K    DGH++I    ++G    VV N     +         
Sbjct: 27  ILTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVVTNVPKGYASDYPGANFL 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + L AL +LA   R      I+ ITGS GKT  KE L   LS          SYN+ 
Sbjct: 87  KVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLYQLLSPSMFVTRSPRSYNSQ 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPL++  M      G+FE G+S  GE+  L  +++P IAV+T +  AH  NFS +EE 
Sbjct: 147 IGVPLSVWLMNEQTQVGVFEAGISMPGEMLALRDIIQPTIAVLTNLGAAHQENFSSMEEK 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K  +F   E   T+  + DD     + A+      + ++   K+  A F ++  ++ 
Sbjct: 207 CREKLILFHDAE---TVIYDGDDEVINKVIAEYPDYKGEKLFWSLKNAEAPFYVKNIEKQ 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              + +    +G+        I     QN +++  + S L    +   K ++   P    
Sbjct: 264 QSVTVITYIYKGEEDSFSIPFIDNASVQNAIISAVVASKLGLSAEDIDKRMTQLEPV--- 320

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R    + Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + G+  +
Sbjct: 321 AMRLEVKVGQHGCTLINDSYNSDINSLDIALDFMNRRPDHRGRRHTLILSDIYQSGQAPE 380

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + + +++++     +      G  +    D +  S    +    + +   + +SL D +V
Sbjct: 381 ALYKEVSDLARKRGVVKFIGIGPELCKQHDVIQISEKFFFPNVEEFIASEVFASLRD-EV 439

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           +++K +   GF +L  LL+++
Sbjct: 440 ILLKGARQFGFDQLTELLVQK 460


>gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
          Length = 463

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 216/456 (47%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311
           +    K  S        L GK S + V+ G  Y +      N+   +G +  ++     +
Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             IK  L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  VLG   E+GEL+   H DL +     N   ++L G   L ++D+  L      ++SE
Sbjct: 369 KFIVLGAFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
 gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
          Length = 477

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 201/449 (44%), Gaps = 30/449 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81
           F+  ++IDSRS      F A+ G   DGH +I  A+ +GA  V+++        +L    
Sbjct: 34  FIRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRT 93

Query: 82  SIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                   + L AL ++A     L +  T I ITGS GKTTTKEML   LS    T    
Sbjct: 94  GTWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQEFPTVKTP 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YN+ +G+PL+L ++     +G+FE+G+ H+GE+  +  ++ P+ AV+T I  +H    
Sbjct: 154 GNYNSTLGLPLSLMQIGDHHKYGVFEMGIDHIGEMDTMLGMLAPNHAVLTNIGISHAEKL 213

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSF-GKSKNADF 258
             I  I + K ++ +        F+  D+   + ++    H  G   I++  G +   D 
Sbjct: 214 GSISAIMTEKGKLLKNARN--GYFMGMDEPSRKAMEHIAGHPQGFWGIHATEGVTGIRDE 271

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            L  W          +  QG  + V    IG H  ++ L  + +   L    +     L 
Sbjct: 272 GLLGWT---------IIYQGTEIHVP--AIGKHSLKDALAAISVARHLGVGEEFIKHGLE 320

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                EGR +     +  G  T+I++ YNA  +S  + +  ++  S  G+ +   VLGDM
Sbjct: 321 KVENLEGRSR-----VVSGDVTVIEDYYNAAASSTTSILDFMAATSWKGDKK--VVLGDM 373

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFL 435
            E+G  S   H  +   L L + S V+L G       + L    +     YS+    +  
Sbjct: 374 KELGRYSDRAHEMIGRRLLLASPSSVFLYGTDTKKTWNILRSGGYAGQLVYSDDEHEVNR 433

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++ ++  GD+V+VK S      + + ++
Sbjct: 434 ALERNIHRGDLVLVKGSRGMAMEKFLPVI 462


>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 490

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 220/476 (46%), Gaps = 25/476 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  +L +A  G  +   P     G+S DSR+IAP  AF A+ G  +DGH F+  A Q+G
Sbjct: 12  FSLDELARATGGRVLRSGPD--ARGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQRG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGS 116
           A   +V+ ++    G  ++ V   +D L AL  LA A R R +A         I+AI GS
Sbjct: 70  AAAFIVSREVALPPGGGAVLV---NDGLTALGALARAHRERWRAGAHPGGPRAIVAIGGS 126

Query: 117 VGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT   +   L+++ +   +A  G+ NN IG+P+TL  +     F + E+G +  GE
Sbjct: 127 AGKTTTTRTIAALLAAVGRGEVHATAGNLNNAIGLPMTLLGLEDRHRFAVVEIGTNQRGE 186

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFE 233
           +  L  +  P +AV+T+I   H      +E++A+ + ++   L   G    N DD    E
Sbjct: 187 VAALARIAGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAALPAEGVALGNGDDVKVVE 246

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---HHGIGY 290
            L+    A   +  Y FG+        R+       S + ++  G+++E+V       G 
Sbjct: 247 QLERAGAAR--RITYGFGERARIRIAGRRPVGVRGTS-VRIERGGEALELVVPLLGEAGA 303

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +          + A +A +   P  G G+     L  G   +ID+SYNANP
Sbjct: 304 LAAAAAVAVVEEAVGEPLSTERAARAAAGLAPP-GDGRLSVRELPDGTV-VIDDSYNANP 361

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGF 409
            SM++++    +++     R + +LG+M E+G L+ + H  L E V +    + V + G 
Sbjct: 362 LSMRSSLRTAVEVAEALGKRLVLLLGEMRELGALAAAEHDALGEQVGAARPAALVAVGGE 421

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + A    +   ++   D      Q  +  GD+V+VK S      R++  L+
Sbjct: 422 AARIARAAEAAGVRAWFAGDADAAAARAQEIVERGDLVLVKGSRGIRMERIVEALV 477


>gi|296166025|ref|ZP_06848476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898624|gb|EFG78179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 444

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 176/399 (44%), Gaps = 62/399 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     D+ + E+ 
Sbjct: 40  TIIGITGSSGKTSTKDLVAAVLEPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLVLEMS 99

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +G + LN D
Sbjct: 100 ARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIARTKSELPQAVPSSGVVVLNVD 159

Query: 229 DSFFELLKAKSHAL------------GIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQ 275
           D     +   + A             G   +++ G S +   + R      + Q  +EV 
Sbjct: 160 DPMVAAMARVTDAWVVRVSRSSHTDSGPSDVWADGVSLDELARPRFTLHAMNAQGTVEVG 219

Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--C 332
           +Q         G+ G H   N L    +     A V+    AL    P      R+R   
Sbjct: 220 VQ--------LGVYGDHQVTNALCAGAVALQCGATVEQVATALEQAGPV----SRHRMHV 267

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-----RRIAVLGDMCEMGELSQS 387
                  T+ID++YNANP SM+A +  L+ I+ HG G     R  AVLG+M E+G+ + +
Sbjct: 268 TTRADGVTVIDDAYNANPDSMRAGLQALAWIA-HGAGAGERRRSWAVLGEMAELGDDAVA 326

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF------------ 434
            H  +  +    ++S + + G           RS+  +H+   M+G +            
Sbjct: 327 EHDRIGRLAVRLDVSRLVVVGTG---------RSMSAMHHGAVMEGSWGASGERGAVSVA 377

Query: 435 ------LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +++ L  GDVV+VK+SN+ G   L + L  +
Sbjct: 378 DADAALALLRAELRPGDVVLVKASNAAGLGTLADALARD 416


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 197/443 (44%), Gaps = 15/443 (3%)

Query: 30  ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84
           I  DSRS+  P+E  FFA+K    DGH++I    ++G    VV +D+  +  S   P   
Sbjct: 27  ILTDSRSLCFPEETLFFALKSERNDGHNYIAELYRRGVRNFVV-SDVPNNFAS-DYPDAN 84

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V + L AL +LA   R      I+ ITGS GKT  KE L   LS          SYN
Sbjct: 85  FLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTIVKEWLYQLLSDDMYVTRSPRSYN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++  +    + GIFE G+S  GE+  L  +++P IAV+T +  AH  NF   E
Sbjct: 145 SQIGVPLSVWLLNKQTEIGIFEAGISEPGEMLALRDIIQPTIAVLTNLGSAHQENFKSKE 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                K  +F   +   TI  N DD          +  G K  +SF   K   F ++  +
Sbjct: 205 AKCREKLILFHDAK---TIVYNMDDEIINDTVESYNYSGEKITWSFKNPKATMF-IKSVE 260

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +    + +    + K  + +   I      N ++   +   L    D   + ++   P  
Sbjct: 261 KRKNDTVINYNFKDKEGKYILPFIDEASISNSIICAIVTLCLGVSTDVLSRRMAKLEPV- 319

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R    + Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + GE 
Sbjct: 320 --AMRLEVKVGQHGCTLINDSYNSDVNSLDIALDFMNRRPDHKGRRHTLILSDIFQSGEK 377

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            ++ + D++++     +      G  + A  D +       +S     +   +  SL D 
Sbjct: 378 PENLYRDVSDLAYKRGVVKFIGVGPELKAHADQIQIPEKFFFSSVEQLINSEVFRSLRD- 436

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
           +V+++K +   GF ++  LL+++
Sbjct: 437 EVILIKGARQFGFDQITELLVQK 459


>gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
 gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
          Length = 463

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 215/456 (47%), Gaps = 46/456 (10%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258
            ++ IA  K++I   + K   IF +N  + +   L  +AK     +K +Y        DF
Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261

Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310
           +    K  S        L GK S + V+ G  Y +      N+   +G +++   L    
Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + L     ++GR +     L +  + ++++SYN N  S  A  +++  ++   + +
Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFIALKNMILDLNI--QNK 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428
           +  VLG   E+GEL+   H DL +     N   ++L G   L ++D+  L      ++SE
Sbjct: 369 KFIVLGAFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             D    F   SL     +V+K S      R++N +
Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
 gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
          Length = 445

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 200/460 (43%), Gaps = 55/460 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVA 76
           P     G +IDSR +   E F A+     DGH +I  A +KGA   +V+        ++ 
Sbjct: 23  PGATFAGFAIDSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPADHQQLID 82

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +  +L +    V D L AL  LA   R + +  ++A+TGS GKTT    L     +   T
Sbjct: 83  AGHALLV----VPDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSACLRTLFPTSAGT 138

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G+YNNHIG+PL++   P D   G+FELGMS  GEI  L  L++P I +IT +  AH
Sbjct: 139 ---TGNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDALAELLQPQIGLITNVGSAH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +        I  AK E    L +  +  +   D    L +A+      + + S G +   
Sbjct: 196 IGKLGSFAAILEAKLE----LARHCSCLIVDGDGQELLDRARQRH---QDVLSVGFTAGC 248

Query: 257 DFQLRKWKQCSEQSWMEVQLQGK-SMEVVH---HGI--------GYHMAQNMLMTLGIVS 304
                   Q   QS ME++ +G   +E+ H   HG+           M +N L+ +    
Sbjct: 249 --------QVFPQS-MELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D       L        R + +R    +G  T I + YN+NP S++AA+   S   
Sbjct: 300 KLGLDQAALQAGLRRVQLPPLRWELHR----RGGNTYIFDCYNSNPGSLRAALEDFS--- 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            H  G R+AVLG+M E+G  S+  H    +V S  N   V   G     L D L   I  
Sbjct: 353 -HYPGYRVAVLGEMRELGAFSEREH---RKVASAINCDLVLTYGDEARFLADELGADIAT 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H     D   +  + +     VV+VK S      RL++ L
Sbjct: 409 HCPTLED---VVARLANCQNAVVLVKGSRGNQMERLLDAL 445


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 193/446 (43%), Gaps = 33/446 (7%)

Query: 27  VNGISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ I IDSR +    A F A+KG   DGHDF+  A + GA   +V+           I +
Sbjct: 25  IDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWTPPFNLKPIFL 84

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V   L AL ++A A RL+    II ITG+ GKT  K++L   LS+ K   A  GS+N+
Sbjct: 85  LKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVCASPGSFNS 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGV L+L  +  D +  I E  +S   E+  L  L+RP   ++T I   HL+  + I+ 
Sbjct: 145 QIGVALSLLTIQKDQELAIIEAAISKKQEMDILADLIRPDYTILTPIGKKHLATLNDIDT 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYD--------DSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           I     ++     KTG + L  D        ++ F        +  +     F  SKN+ 
Sbjct: 205 ITYETLKLVWATSKTGWVLLPNDIYQQFHLKNNLFSSYIWDRDSKCLPHAIPF--SKNSP 262

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKA 316
           F         + S  E Q+            GY    N++      + L+    +   K 
Sbjct: 263 FASHYQLTFPDSSRYEQQMTN----------GYSYFLNLINITSKAAWLSGIKAENIKKI 312

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              ++P+  R + ++  +     T I+E+  ++P S+  A       +P    R+I + G
Sbjct: 313 FEYYYPEPSRTEIWKSPIGA---TFINETSCSDPHSIDRAFKHFEHAAP--SQRKIFIFG 367

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDALPRSIHVHYSETMD 431
            M      +Q+++  + + +S  ++ H+ L G   F  L   +K   P +  + +    +
Sbjct: 368 GMKGNISFAQNYYTKIGKTISKAHLRHLLLFGHQPFKTLIDEVKKISPETEILCFKRCEE 427

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGF 457
            L  ++Q +L   D++++K      F
Sbjct: 428 ALN-YLQKNLQSQDLILIKGDRKIPF 452


>gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
 gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
          Length = 471

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 192/419 (45%), Gaps = 32/419 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           + T    L+ IQ H    +PQ  + G        +  D+R++   + F A+KG  +D + 
Sbjct: 1   MMTLQQALELIQSH----IPQARLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDANQ 56

Query: 56  FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F+  A + GA   + +  +  A +  + +P     D L AL  LA A R R    +IA+T
Sbjct: 57  FLAQAREAGAAAALAHGGLEAAGLAGIEVP-----DSLAALGALATAWRARFALPLIAVT 111

Query: 115 GSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M+   L +   +   A  G++NN IG+PL+L RM       + E+GM+H 
Sbjct: 112 GSNGKTTVTQMVASILRAHAGEAALATRGNFNNSIGLPLSLMRMTAQHRVAVLEMGMNHP 171

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P +A++      H      +E +A     +   L   G       D++ 
Sbjct: 172 GEIAELAAIGQPTVALVNNAQREHQEFMHTVEAVARENGSVLLSLPADGVAVFPAGDTYT 231

Query: 233 ELLKAKSHALGIKTIYSFGKSKN-ADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            L +  + A   +    FG+S + A    R   W   + Q +  V  +G++  V  H  G
Sbjct: 232 PLWRELAAA---RQCLLFGESADGAQVHARDALWLGDAWQ-FTLVTPEGEA-PVRLHIAG 286

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N L            +    + LSVF P +GR +    ++     T+ID+SYNAN
Sbjct: 287 RHNVRNALAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRTVTVIDDSYNAN 346

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           P S+ AAI VL ++       ++ VLGDM E+G+    FH +   +     I+ ++  G
Sbjct: 347 PDSVAAAIEVLRELP----APQLLVLGDMGEVGDQGPQFHAEAGALARSLGIARLFTLG 401


>gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
 gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
          Length = 504

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 203/497 (40%), Gaps = 82/497 (16%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   V G +  DSR +     F A+ G   DGHD    AV+ GA  V+           +
Sbjct: 23  PSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAASAVEAGAVAVLAAR-------PV 75

Query: 82  SIPVFGVDDVLGALNKLAVAAR------------------------LRSKA-TIIAITGS 116
            +P   V    G     A+A                          L +K  T++ +TGS
Sbjct: 76  GVPAVVVSPAPGTGPSKAMALEHDTDGSGAAVLAALAKLARASVDDLTAKGLTVVGVTGS 135

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK++L   L  +    A  GS+NN +G P T  R      F + E+     G I 
Sbjct: 136 AGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTALRADAGTGFLVLEMSARDRGHIA 195

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFE 233
            L  +  P I V+  +  AHL  F   + IA+AK E+ E L   +  G   LN DD    
Sbjct: 196 SLAAIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGELPESLPSADDGGVAILNADDPLVV 255

Query: 234 LLKAKSHALGIKTIYSFGKSKNA---------DFQLR-KWKQCSEQSWMEVQLQGKSMEV 283
            +  ++ A     +   G+S++A         D + R ++   +    + V+L       
Sbjct: 256 AMAPRTSA----RVVLVGRSESAHVRATDIVLDERARARFTLTTAAGSVPVEL------A 305

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           VH   G H   N L    +     AD+D   +ALS      GR  R          T+++
Sbjct: 306 VH---GEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGR--RMDVRDRPDGVTVVN 360

Query: 344 ESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +SYNANP SM+AA+  L  ++  G     R  AVLG+M E+G  S   H  +       +
Sbjct: 361 DSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPESVVEHDAIGRFAVRLD 420

Query: 401 ISHVWLSGFHVLALKDALPRSIHV------HYSET------MDGLFLFIQSSLVDGDVVV 448
           +S + + G    A      R++H        + E       + G    ++  L  GD+V+
Sbjct: 421 VSRLIIVGTGRPA------RAMHQGAVMEGSWGEESILVPDIAGAVALLEKELAPGDLVL 474

Query: 449 VKSSNSCGFYRLINLLL 465
           VK+S S G + + + +L
Sbjct: 475 VKASQSIGLWEVADTVL 491


>gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 463

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 146/295 (49%), Gaps = 19/295 (6%)

Query: 105 RSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YACIGSYNNHIGVPLTLARMPV 158
           R +AT ++A+TGS GKT+ K +L   L    +      YA  G+ NN IG+PL +   P 
Sbjct: 57  RDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPD 116

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D D  I+E+G    G+I +LT + +PH+A++  IAPAHL     +  +A  K  I+  L 
Sbjct: 117 DADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALP 176

Query: 219 KTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEV 274
             G   +N DD+F   FE  + +S  +  + +  +G   +A+   R+ +       +  V
Sbjct: 177 ADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLV 235

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             QG++ ++     G H   N L   G+   L A +   + A  +   +   G++    L
Sbjct: 236 TPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVIAAGLAQARPVAGRQIAQTL 292

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
             G   LID+SYNANP S+ AAI  L+     GEG    VLGDM E+G    + H
Sbjct: 293 PNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLGDMRELGAEGVALH 342


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 172/388 (44%), Gaps = 26/388 (6%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +L   + G   G  P+  +  ++IDSR + P + F A+ G H DGHDF+  A   GA L
Sbjct: 7   RELAALLDGELRGTPPEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAEGAGASL 66

Query: 68  VVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           VV+  D     G    P  G     V D L AL +LA   R      ++A+TGS GKT  
Sbjct: 67  VVLRRDRCPDSG----PGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKTVV 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K  LT  L+   +  +  GS+N+ +GVPL +   P   + G+FE G+S  GE+  L  ++
Sbjct: 123 KTALTALLAGRFRVASSPGSWNSQVGVPLAVLTAPPGTELGVFEAGISAPGEMERLEAIL 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P   V+  +  A+L +F      A  K  +F+G++    + +  DD     L      L
Sbjct: 183 QPDHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWV-IAPDDPLVNALP-----L 236

Query: 243 GIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + I+   G  +    + R      +      Q Q     V  H     +  ++L+ L 
Sbjct: 237 PCRRIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQ-----VTVHTRSRPLVDDLLIALT 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L        + L  +     R + +R        T+I+++ + +P S++ A++ ++
Sbjct: 292 AAHHLGVPAAEMAEVLQDYTFGPTRMETWRTPEG---ITIINDTASDDPLSVQTALATVA 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH 389
              P G GRR+ V G M ++G   Q  H
Sbjct: 349 AF-PEG-GRRLFVFGGMGDLGPCEQREH 374


>gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 196/471 (41%), Gaps = 61/471 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR I   E F A+ G  +D HDF+  A + G G  ++++          +P   V 
Sbjct: 35  VGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISSQDKCPA---DLPAICVS 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACI--GSYNNH 146
           +    L  LA A R      +  +TGS GKTT KEM+ +I  +++ + +  +  G+ NN 
Sbjct: 92  NTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIFKAAVGEQHTLVTKGNLNND 151

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL ++       + ELGM+H GE   L  + + +IA+I      H    + +  +
Sbjct: 152 IGLPLTLLKLRSTDRLAVVELGMNHPGETAQLAVIAQANIALINNAQREHQEFMATVAAV 211

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI---YSFGKSK--------- 254
           A   ++    L   G      D  F  +   +  A G K I    S  ++K         
Sbjct: 212 AEEHSDAIRTLPSDGVAIFPADSEFAGVW--RQAAAGRKVIDFVLSSAQTKASAAVTGCL 269

Query: 255 --NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             N   Q++     SEQ  +EVQL         + +G H  +N L    +       ++ 
Sbjct: 270 LSNGLVQIK-----SEQGTIEVQL---------NTLGSHNVRNALAASAVGIAAGVSLEK 315

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F P  G   R +        TLID+SYNANP S++ AI  L Q          
Sbjct: 316 IKQGLESFSPVNG---RMQAKAIDSSRTLIDDSYNANPDSVRVAIDALKQSG----NLSW 368

Query: 373 AVLGDMCEMGELSQSFHID---------LAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            +LGDM E+G     FH +         +A++ +L       L GF+   +      + H
Sbjct: 369 LILGDMGEVGNQGPEFHREVGAYAAEQGVAKLFALGEQCQFALQGFN--EVNKGGETTSH 426

Query: 424 VHYSETMDGLFLFIQSSLVDGDV-------VVVKSSNSCGFYRLINLLLEE 467
             +   MD L   ++ +L            ++VK S      R++  LLEE
Sbjct: 427 AKHFADMDSLIAQLRDALRSQSSGSNQHLNILVKGSRFMRMERVVQALLEE 477


>gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 496

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 191/382 (50%), Gaps = 13/382 (3%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           S++ P F V+D    L  L ++A+LRS     ++AITGS GKT+T+ M+T  L   +K  
Sbjct: 92  SVTTPQFIVEDSWKFL--LELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE-EKVL 148

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPA 195
              G++N    VPL ++++  + D    E+ ++ L   +   +++L++P IA++T+I  A
Sbjct: 149 ENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQPDIAIVTSIGEA 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGK 252
           HLS+    + +A  KA+IFEGL++ G   +N D   + F  L+ A         +YS   
Sbjct: 209 HLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHD 268

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +  A F +++  Q  E   + V   G+ + +        M  N L  L +   L  ++  
Sbjct: 269 ASRAVF-VKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISP 327

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            IK    F P     +R       G  FT ID+++NA+  SMK AI+    I P  +G +
Sbjct: 328 YIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNK 387

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETM 430
           + +LG + ++G+ ++  H  + E L+    +H++  G H  L  ++       + + +++
Sbjct: 388 VLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKIDDRLQWFDSL 447

Query: 431 DGLFLFIQSSLVDGDVVVVKSS 452
             L   +++ L++  +V+ K S
Sbjct: 448 QELCNDLETKLIEDSLVLAKGS 469


>gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
 gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
          Length = 301

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 13/310 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           + G+ ELGMS  GE+  +  + +  +AVIT I   H+      E I   K  I +GL + 
Sbjct: 2   EIGVIELGMSEPGELTVIAGIAQIQMAVITNIGITHIEQLGSQENIFREKLSIQDGLTEH 61

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G +FLN DD   ELLK  +   G +TIY +G  +N  ++    +  +           + 
Sbjct: 62  GILFLNGDD---ELLKKTTARDGFETIY-YGTGENCHYRAVDVRLENGYPVFTAVCGDEQ 117

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    +G H   N +++L + S+    ++ A K L+ F   + R + Y    + G  T
Sbjct: 118 VPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAAKQLAEFTGFQNRQQIY----HTGGMT 173

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID++YNA+P SMKA + VL+ I  H   RR+AVL DM E+G  S  +H ++   ++ + 
Sbjct: 174 IIDDTYNASPVSMKAGLEVLNSIE-HSR-RRVAVLADMKELGPDSPRYHYEIGTYIAAHP 231

Query: 401 ISHVWLSGFHVLAL-KDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  V + G     + +    ++ H+   E MD   L  ++++ L +GD V+ K SNS   
Sbjct: 232 VDKVAVLGEPAKEIARGVREQAPHILVYEFMDREPLVEWLKTELREGDAVLFKGSNSMEL 291

Query: 458 YRLINLLLEE 467
            ++  + LE+
Sbjct: 292 GKVAAVFLEK 301


>gi|296394968|ref|YP_003659852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
 gi|296182115|gb|ADG99021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
          Length = 491

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 172/382 (45%), Gaps = 36/382 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T++ ITGS GKT+TK+++T  L++   T    GS+NN +G P T+ R   D  F + EL 
Sbjct: 119 TVVGITGSSGKTSTKDLVTQVLATRGATVGPPGSFNNELGHPWTVLRADQDTRFLVLELA 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225
              +G I  L  + +P I V+  +  AHL  F   E IA AK E+ E L   +  G   L
Sbjct: 179 ARTIGHIAELAQIAQPRIGVVLGVGSAHLGVFGSRENIAIAKGELVEALPCADDGGVAVL 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEV 283
           N DD     + +++ A     +  +G +++AD +    +    S  S+  +  QG +  V
Sbjct: 239 NADDPLVSAMASRTRA----RVVRYGMAESADVRAADVRLDPLSRASFTLITPQGDA-PV 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  Q               +  A  A ++   +    +R + A       +++
Sbjct: 294 TLRVHGEH--QAHNALAAAAVAAECGLSPAQTAEALSAAQAASPRRMQVAERADGVVVVN 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +SYNANP SM+A +  L  ++    G   AVLG M E+G+ S   H  L   +       
Sbjct: 352 DSYNANPESMRAGLRALVGMAHQCGGASWAVLGQMGELGDDSIVLHDQLGRFV------- 404

Query: 404 VWLSGFHVLALKDALPRSIH-VHYSETMDGLF--------------LFIQSSLVDGDVVV 448
           V LS   ++ + D+  RS   +H    ++G +                + + L   DVV+
Sbjct: 405 VRLSVDRLVVVGDS--RSAKALHTGAVLEGSWSGEAVLVPDWQSAARLVAAELGPRDVVL 462

Query: 449 VKSSNSCGFYRLINLLLEEFPA 470
           VK+S S G +++   LLE  P+
Sbjct: 463 VKASQSEGLWQVAEALLEPRPS 484


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 184/405 (45%), Gaps = 24/405 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G  P   ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YTIETIAERISARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYS 61

Query: 63  KGAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV+ +    + S          L++    V + L AL KLA   R + +  +I 
Sbjct: 62  RGVRNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIG 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  IFE G+S +
Sbjct: 122 ITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISEM 181

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F 
Sbjct: 182 GEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKNCD---VVIYNGDDEFI 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               AKS     +  +S    +   F  ++ K + C+  S+  +++       +   I  
Sbjct: 239 SNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNT---FILPFIDD 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N L  L     L    +   + ++   P      R      +    LI++SYN++ 
Sbjct: 296 ASIENSLNCLAACLYLMLPAEKITERMATLEPV---AMRLEVKEGKNGCLLINDSYNSDL 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           AS+  A+  L + S     +R  +L D+ E G+ + + +  ++++
Sbjct: 353 ASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQL 397


>gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 496

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 199/465 (42%), Gaps = 48/465 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGV 88
           +  DSR +A  + F A+ G   DGHD+   A+ +GA G++      V ++  +  P   V
Sbjct: 30  VEFDSRKVASGDLFVALSGVKVDGHDYAATAMDQGAAGVLAARPVGVPAV--IVPPATEV 87

Query: 89  DD---------------VLGALNKLA--VAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
           D                VL  + KLA  V  +L ++  T+I ITGS GKT+TK+++   L
Sbjct: 88  DHHSYATEHDTDGSVAAVLEGMAKLARHVVDKLSARGLTVIGITGSAGKTSTKDIVHTIL 147

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T A  GS+NN IG P T  R      + + E+    +G I  L  +  PHI V+ 
Sbjct: 148 ELAGDTVAPPGSFNNEIGHPYTALRCTETTKYLVSEMSARSIGNIAHLAAIAPPHIGVVL 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH+  F   + IA AK E+ E L   G   LN DD +   +  ++ A    T++SF
Sbjct: 208 NVGTAHMGEFGSRDNIARAKGELVEALPADGIAVLNADDDYVAAMADRTSA----TVWSF 263

Query: 251 G------KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  +    D +L    + +      + Q    + +V     G H   N L      
Sbjct: 264 STLHKPVRVAATDIRLDNLSRPTFTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAA 323

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-KAAISVLSQ 362
                D  T  + L     +         A N     +ID++YNANP SM     ++   
Sbjct: 324 LAAGVDFATVAQGLRAHTVRSAHRMDVHHAGND--VIVIDDAYNANPESMRAGLRALALA 381

Query: 363 ISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419
            + +G G R IAVLG M E+G+ + + H++L   ++   I  V + G    A        
Sbjct: 382 AAKNGPGARSIAVLGPMAELGQDATADHVELMRTVAEQGIDLVVVVGTDENARAMINAAA 441

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
               R+I    +       L +   L  GDV++VK+SN+   YRL
Sbjct: 442 AMGLRAIPTADTTQAATEVLKV---LGRGDVILVKASNA---YRL 480


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 209/440 (47%), Gaps = 13/440 (2%)

Query: 32  IDSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +DSR +  P +A +FAI G H++GH+F+     +G    V+  ++ A +   +  +  V 
Sbjct: 30  LDSRKLYNPSQALYFAINGEHHNGHEFVAELYARGVRNFVIEENLPAHVKLPNANILKVT 89

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             + AL ++A A R + +  +I +TGS GKT  KE L   L+   K      SYN+  GV
Sbjct: 90  SAVNALQQVAAAHRNQYQIPVIGVTGSNGKTMVKEWLAKLLAEDFKVVKSPKSYNSQTGV 149

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ +M      GIFE G+S   E+  L  +++P I + T +  AH   F    +  + 
Sbjct: 150 PLSVWQMNKRHTMGIFEAGISAKNEMTALQKVIQPSIGIFTNLGTAHDEGFDNRTQKFAE 209

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCS 267
           K ++FE   K       +  ++ +++   S +      +++GK++ A  +L  ++     
Sbjct: 210 KWKLFEHC-KAVVCCAEHLQTYHDIVTKTSFS---GQPFTWGKNEQAQLRLLDKQTHLTQ 265

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +Q+ ++VQ QG++  +    I     +N+L  +  + +L    D   + ++   P   R 
Sbjct: 266 QQTQLKVQYQGENHFIQAPFIDEASVENILHCVATMCLLGLSFDKIQRRIARLRPVSMRL 325

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  R   N     LID+SYN + A +K A+  +S  +     ++I VL DM + G   + 
Sbjct: 326 ELKRGMRNT---YLIDDSYNNDLAGLKIALDFMS--TQDVNLQKIVVLSDMLQSGLPPEK 380

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +  +A++L    I  V   G  +   + +      V + +T D L   ++ + +   V+
Sbjct: 381 LYQAIAQLLQSKAIDRVIAVGEEIKKHQASFNVLDVVFFDQTKDLLESQVELARLANAVI 440

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +VK +    F  L++ L ++
Sbjct: 441 LVKGARRFRFEHLVHQLQQK 460


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 207/445 (46%), Gaps = 25/445 (5%)

Query: 22  VPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           VP   +N +  DSRS++ P E+ FFAI     +GH++I    Q+     VV ++M     
Sbjct: 17  VPSVEINWLLTDSRSLSFPVESLFFAIHTARNNGHNYIAELYQQNLRYFVV-SEMHPEFE 75

Query: 80  SLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            ++  VF  V+D L AL  LAVA R      +I ITGS GKT  KE L   L +      
Sbjct: 76  KMTDAVFLKVEDSLKALQALAVAHRNAFDIPVIGITGSNGKTVVKEWLYQLLHTDYVITR 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              SYN+ IGVPL++  +      GIFE G+S   E++ L  ++RP I + T +  AH  
Sbjct: 136 SPRSYNSQIGVPLSVWALSESTQLGIFEAGISEPHEMKRLQPIIRPTIGIFTNLGDAHQE 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           NFSG+++    K ++F+  E    +    D+   E+  A+S   G+   +S+GKS  A  
Sbjct: 196 NFSGLKQKCEEKLQLFDQSE---VLVYCSDNKLVEISIAQSAFKGV--FFSWGKSDKATV 250

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL---TADVDTAIK 315
           Q+ + ++    + + ++       V          +N L  + ++  L   TA++   I 
Sbjct: 251 QIVQKEKTVSSTKVVLKYNAVESSVTIPFTDDASIENALQCVAVMLYLGLKTAEIAKRIL 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L     +    +  R  L      +I++SYN++  S+  A+  L+Q +   +  +  +L
Sbjct: 311 LLEAVAMRLEVKEGVRDCL------IINDSYNSDLNSLSIALDFLNQQATAKKLSKTLIL 364

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            D+ + G+ S   +  ++ ++   N+  +   G  +    D         + +T D    
Sbjct: 365 SDILQSGQTSDELYKTVSGLVHNKNVQRIIGIGSEISKHADIFELVDKTFFEQTED---- 420

Query: 436 FIQSSL---VDGDVVVVKSSNSCGF 457
           F++S +   +  +++++K S +  F
Sbjct: 421 FLKSPILRELKNEIILLKGSRTYHF 445


>gi|319791795|ref|YP_004153435.1| UDP-N-acetylmuramoyL-tripeptide--D-alanyL-D-alanine ligase
            [Variovorax paradoxus EPS]
 gi|315594258|gb|ADU35324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
            [Variovorax paradoxus EPS]
          Length = 1592

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 121/499 (24%), Positives = 219/499 (43%), Gaps = 47/499 (9%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNG------------------ISIDSRSIAPQEAFF 44
            P+WT   L Q   G  +   P G+                     ++ D R++A  E F 
Sbjct: 1108 PVWTADQLAQITGGQWLVPPPAGWSVQSVVRLPMHLKVRPGPALFVASDYRTLAAHENF- 1166

Query: 45   AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAA 102
            +     +D HD +     + AG +V +     ++  L    P+  V D + AL  L  AA
Sbjct: 1167 SHAPEDWDQHDDLPRLHTQCAGAIVQH-----AVEGLPPDFPLLQVPDPIRALLSLGAAA 1221

Query: 103  RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            R R K  ++ +TG+VGK++T  M+   L    +    + + N+ +GVP  +A +  DVD 
Sbjct: 1222 RARYKGLVVGVTGTVGKSSTIAMVRDLLPPGARVLTTVENNNSRVGVPGAMASLGPDVDV 1281

Query: 163  GIFELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E+  S L   R    L  RPH+A++T +  +  +  + +E+ A  K+  F GLE  G
Sbjct: 1282 CILEMAQSALWMDRGPISLEARPHVAILTEVGLSQTAKTNTLEKTAEYKSRAFLGLEPGG 1341

Query: 222  -TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +   +     +++KA         +++ G     + +L   +  S    + +  +G+ 
Sbjct: 1342 IAVVSGHIPHLAKVVKAAMRTAA--KVWTVGTGPGDNIRLLDARPESSGCRVRLSFKGRI 1399

Query: 281  MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-------SVFHPKEGRGKRYRCA 333
             E +       + +N  +    +  +  D + A   +       SV   +  R +     
Sbjct: 1400 HEYLFPVASIGLVRNSALAFAAIVAMGFDAEEASARMPNVRLPASVMQVEPLRTR----- 1454

Query: 334  LNQGFFTLIDESYNANPASMKAAIS-VLSQISPHGE---GRRIAVLGDMCEMGELSQSFH 389
             +    TL+D+S+NA   SM+ A+S V S  +P G     R++ VLG +  +GE +++ H
Sbjct: 1455 -SGALVTLVDDSWNAEVMSMRNAMSFVRSYRAPSGNAPVARKVGVLGRIVNLGEQAEAMH 1513

Query: 390  IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              LAE L    I+H+   G  +  L++ +P S+   + +    L L++   L DGD+++V
Sbjct: 1514 RGLAEPLLASGIAHLVTHGDEMRWLREEVPTSLLGPHFDNAAELTLYLGEYLRDGDLLLV 1573

Query: 450  KSSNSCGFYRLINLLLEEF 468
            K       +  I  LL++ 
Sbjct: 1574 KGDRDRSDFGTIPSLLKKL 1592


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 177/376 (47%), Gaps = 11/376 (2%)

Query: 24  QGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           Q  ++ I  DSRS+  P+E  FFA+K    DGH +I     +G    VV TD+   +   
Sbjct: 21  QATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYARGVRNFVV-TDVPEQLSHY 79

Query: 82  SIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +   F  V + L AL +LA   R + +  ++ ITGS GKT  KE +   LS  K      
Sbjct: 80  ADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSNGKTVVKEWIYQLLSPEKVITRSP 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            SYN+ IGVPL++  M    + GIFE G+S +GE+  L  +++P I V+T I  AH  NF
Sbjct: 140 RSYNSQIGVPLSVWMMNEHTELGIFEAGISEMGEMEALQPIIQPTIGVLTNIGWAHQENF 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           S ++     K ++F+  +    I  N D+       +KS     +  +S   ++   F +
Sbjct: 200 SSLQGKCMEKLQLFKDCD---VIIYNGDNELISSCVSKSLFTSREIAWSMKDNERPLF-I 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K ++    + ++ +  G   E     I     +N L  L +   L    +   + ++  
Sbjct: 256 EKIEKDDTGTTVKYRYLGFLKEYRIPFIDDASIENSLNALAVALYLMVSPEDIAERMAHL 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P      R      +    LI++SYN++ AS+  A+  +++ +     RR  +L D+ E
Sbjct: 316 EPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARRTEDKGRRRTLILSDILE 372

Query: 381 MGELSQSFHIDLAEVL 396
            G+ S+  +  +A+++
Sbjct: 373 SGQPSKLLYRQVADLV 388


>gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
 gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 199/450 (44%), Gaps = 30/450 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR++     F  ++G + DGH +I  A++ GA   VV+ D +    +  + +    
Sbjct: 41  VVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLSLCKNY 100

Query: 90  D-----VLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           D     V   L  L  AAR           I ITGS GKTTTKE+L    S    T +  
Sbjct: 101 DASCVAVKNNLKALQDAARYYLSKFPNLYKIGITGSSGKTTTKEILASIYSKKYNTVSTK 160

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ N+  G+PL++  +  + + GIFELGM+  GEI  +  ++ P+ A+IT I  AH+   
Sbjct: 161 GNLNSETGLPLSVFEVRPEHEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGIL 220

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              + IA  K EIF   +     F+  +  F + LK   H     ++++   + ++  Q 
Sbjct: 221 GTKQAIAEEKKEIFSFFKDDSLGFIP-ECEFTDFLKDIPHG----SVFTVSDNDSSLVQ- 274

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               +  +   +  ++  K  E++    G +  +N L+ + +              L   
Sbjct: 275 ----KVEDAGVLGSKIFYKGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAV 330

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P  GR +     +  GF T   + YNANP SMK+AI     I  + E  +  VL  M E
Sbjct: 331 RPLFGRSQ-----VLHGFVTYFLDCYNANPDSMKSAIEFCDSI--NTECAKHYVLASMLE 383

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLF 436
           +G  S   H  + E     N  +++  G  + +  + +     + I+   +   D L   
Sbjct: 384 LGAESDYEHKKIIEDALKSNADNLYFFGDDICSAFEGMNVSSSKKIYKFKTNQFDALKEQ 443

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++ +L   D V++K S S    RL ++L E
Sbjct: 444 LKENLSKDDFVLLKGSRSMELERLESVLKE 473


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 196/434 (45%), Gaps = 31/434 (7%)

Query: 32  IDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IP---V 85
           +DSR I  A +  FFAIKG H+DGH F+  A Q G     V + +V  +  LS  P    
Sbjct: 30  LDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAG-----VRSFVVTKVPELSQFPEANF 84

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V++V+ AL +LA   R +    +I ITGS GKTT KE L   L           S+N+
Sbjct: 85  LLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEWLFQLLYPHYAIIRSPRSFNS 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPL++  +    + GIFE G+S  GE+  L ++++  I + T +  AH   FS   E
Sbjct: 145 QIGVPLSVWGIQAQHELGIFEAGISRKGEMGNLANIIQAKIGIFTMLGEAHNEGFSSKAE 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWK 264
               K  +F   E    I+   D +    +K     LG KT+ +S  +  NAD  + K +
Sbjct: 205 KLREKLLLFA--EVDLLIYRRDDATVHRAIK----DLGRKTLAWSLDQHPNADLYVFKTE 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                + +E + Q     +      +   +N +    ++  L    +   + ++   P  
Sbjct: 259 TFLNHTHLEGRYQSSEQRIALPFTDHASIENAIHCWAVLLHLGLKSEEIAERMAQLEPVA 318

Query: 325 GRGK----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            R +    R  C        +I+++YNA+ +S++  +  + Q   HG  R + VL ++ +
Sbjct: 319 MRMELLDGRNNC-------LIINDTYNADLSSLRLGLQWMRQ-HEHGRNRSL-VLSEILQ 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            G   +  +  +A+++  + +S V   G         LPR IH  + ET + L   +   
Sbjct: 370 SGSSDEKLYRKVAQLIQEHQVSRVIGIGPATAVFATLLPREIHQLHFETTEALLEALPHL 429

Query: 441 LVDGDVVVVKSSNS 454
               +V+++K +  
Sbjct: 430 SFQSEVILIKGARQ 443


>gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
 gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
          Length = 488

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 213/487 (43%), Gaps = 41/487 (8%)

Query: 4   LWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           L +F + ++A+ G  +   G   +     ++ DSR++     F  + G   DGH +IL A
Sbjct: 16  LLSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYILQA 75

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFG---------VDDVLGALNKLAVAARLRSKATII 111
           +++GA +V  + +    +  L +             V + L AL + A AA ++    +I
Sbjct: 76  LEQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTAL-QCAAAAYVKKFPDLI 134

Query: 112 --AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
              ITGS GKTTTKE++   LS         G+ N+  G+PL++ ++  + + GIFE+GM
Sbjct: 135 KIGITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSETGLPLSVFKIRAEHEVGIFEMGM 194

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +  GEI  L +++ P  AV+T I  AH+      + IA  K +IF         F+   D
Sbjct: 195 NRKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFTADCVAFIPAAD 254

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + + L          T+  +G + +   +++             +   + + ++    G
Sbjct: 255 PYADFLAENCGG----TVVRYGVNTDPVSRIKN------AGLAGTEFLYRQVPILLPLPG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                + L    + S +    D     L    P  GR +     +  G  +++ + YNAN
Sbjct: 305 AGNFSDALAAASLASYMGFGADDIKAGLESVRPLFGRSQ-----IIGGPVSVVQDCYNAN 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SM+ A+   + +     GR+IAVLGDM E+G  S+S H+      +      +   G 
Sbjct: 360 PDSMEQALDFFASLDIE-PGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVLLVCIGR 418

Query: 410 HVLALKDALPR-----SIHVH-YSETMDGLF----LFIQSSLVDGDVVVVKSSNSCGFYR 459
            V A  + L R     S+ V  ++++ D +       +   L  GDVV++K S      R
Sbjct: 419 AVSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLLKGSRGMRLER 478

Query: 460 LINLLLE 466
           L   L E
Sbjct: 479 LTPYLTE 485


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 203/468 (43%), Gaps = 22/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQ 62
           +T   +   I  H  G      ++ +  DSRS+A  EA  FFA++    DGH ++    +
Sbjct: 3   YTSEQITALIDAHRFGANSDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYR 62

Query: 63  KGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +G    VV+    D  +   + +  V  V D L AL  LA   R R    ++ ITGS GK
Sbjct: 63  RGVRDFVVSALPDDYASRFPAATFYV--VADPLKALQHLAECHRRRFDIPVVGITGSNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  KE L   LS          SYN+ +GVPL++  +      GIFE G+S  GE+  L 
Sbjct: 121 TIVKEWLYQLLSPQLVVTRSPRSYNSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALR 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAK 238
            +++P I V+T    AH  NF+ +EE  + K  +F+  +    +  + DD    E ++  
Sbjct: 181 PIIQPRIGVMTNTGQAHQENFTSLEEKCAEKLSLFKDAD---VLIYDADDPVVAEGVRQA 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S A G +  +S  K +     +RK    SE++ +      +  +           QN + 
Sbjct: 238 SFA-GDQLAWSRTKDEGP-LVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIH 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAA 356
            L +   L  D     + ++   P        R  + QG     LI++SYN++  S+  A
Sbjct: 296 CLAVCLYLHVDAAVIAQRMARLEPVA-----MRLEVKQGVRGCILINDSYNSDVNSLDIA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  + +       R+  +L D+ + G   +  +  +AE+++   +  +   G  + A++D
Sbjct: 351 LDFMQRRPDRVGMRKTLILSDISQSGMPREQLYAQVAEMVNRRRVDRLIGVGPDLSAMQD 410

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                I   +  T   L    +   +  ++V++K + +  F  L  LL
Sbjct: 411 LF--KIDAVFYPTTKALLESGKVGRLRNEMVLLKGARAYNFEALTELL 456


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 203/454 (44%), Gaps = 35/454 (7%)

Query: 30  ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIPV 85
           I  DSRS+  P+E  FFA++    DGH +I     +G    VV    D  +SI   +   
Sbjct: 27  ILTDSRSLCFPEETLFFALRSERNDGHHYIDELYHRGVRNFVVEQLPDAFSSIYKQA-NF 85

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD+ L AL +L    R      I+ ITGS GKT  KE L+  LS          SYN+
Sbjct: 86  LQVDNSLLALQQLTTWHRSAFTIPIVGITGSNGKTMVKEWLSQLLSFDHNVTRSPKSYNS 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPL++  +    + GI E G+S  GE+  L  +++P I V+T++  AH  NFS IEE
Sbjct: 146 QIGVPLSVWLLNESSEIGIIEAGISKRGEMEALQKIIQPTIGVLTSLGAAHQENFSSIEE 205

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKN 255
               K  +F   + T  +    DD           A+  K I  F           K+K+
Sbjct: 206 KCKEKLLLF---KDTQALVYQMDD-----------AIAAKCIEDFSYDGTLLGWSEKNKD 251

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           A   + K  + +  S +E   Q  +  +     I     QN +    I   L    +T  
Sbjct: 252 AALFVEKISKDTTTSTIEYCWQTATKGKFTLPFIDDASIQNCITCAAISLYLGMKPETLA 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + + +  P      R      Q   TLI++SYN++  S+  A+  +++     +  R  +
Sbjct: 312 ERMPMLEPV---AMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDQQKRARTLI 368

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGL 433
           L D+ + G+  +  + D+AE++    I      G  ++  ++        ++ E + D +
Sbjct: 369 LSDILQSGQTEKQLYCDVAELVQKRGIKKFIGIGSALMRQQEVFDGVEERYFFENVADFI 428

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +SL D +V+++K + S GF +L  LL+++
Sbjct: 429 NSKVFNSLAD-EVILLKGARSFGFDQLTELLVKK 461


>gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 486

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 216/489 (44%), Gaps = 42/489 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR       F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGSAGALG 65

Query: 65  A-GLVVVNTDMVAS------IGSLSIPVFG---VDDVLGALNKLA---------VAARLR 105
           A G +V + +   S       G    P  G   V+D + AL  LA          AA   
Sbjct: 66  AVGAIVSDLEAARSGLIQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRTAADRG 125

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + 
Sbjct: 126 ERLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVL 185

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G I +LT +    +A +  I  AH+  F  IE +A+AKAEI  GL   G   L
Sbjct: 186 EMGASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLPEGVAIL 245

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQG--KS 280
           N DD+    +   +       + +F  ++     LR  +     + +S  ++ L G    
Sbjct: 246 NADDARAAAMAGLA----PAQVLTF-SAQGGPADLRAERIVLDEAARSAFDLHLPGLDGP 300

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQG 337
             V     G H   N L   G+      +   +   + ++S+  P      R   +   G
Sbjct: 301 RRVQLAVAGAHNVANALAAAGLALAAGLEPELIAERLGSVSIESP-----HRMDVSELSG 355

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              LID+SYNAN  SM AA++ L  ++  G  RR+ V+ +M E+GE S + H    E+ +
Sbjct: 356 DLLLIDDSYNANIDSMTAALAALPALA--GGRRRVVVVSEMLELGESSAADHARTGELAA 413

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               + +   G    AL  A  R + V   +        I + L DGD V+VK SN  G 
Sbjct: 414 EAGAAMLIGIGSTQEALDAAGARGVEVVGFDDAAAAISQIDALLSDGDAVLVKGSNGSGA 473

Query: 458 YRLINLLLE 466
           +RL + L E
Sbjct: 474 WRLADHLKE 482


>gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
 gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
          Length = 439

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 200/439 (45%), Gaps = 51/439 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P  AFFA+ G    G +F   AVQ GA  VV + +   ++  ++ P   +    
Sbjct: 36  DSRQVGPGVAFFALPGARTHGREFGQQAVQAGAAFVVSDLNHPGAV-QVARPERAL---- 90

Query: 93  GALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
                LAV   LR   + +++A+ GS GKTTTKE L   L+      A  G+ NN  G  
Sbjct: 91  -----LAVGRALRDQFRGSVLAVGGSSGKTTTKECLAQGLA----WPAPEGNLNNAPG-- 139

Query: 151 LTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           LT     ++   G + ELG+  L E+  LT+L RP I V+T +   HL     +E +   
Sbjct: 140 LTRFFFHLEPAEGCVVELGIDRLLEMAELTYLARPDIGVLTGLGVEHLEGLGNLENVVRE 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           ++ + +              S   L   + +  L +  + ++G  +  DF+    +   E
Sbjct: 200 ESWLLQ-------------VSPLRLASVQAAELLDLPNLVTYG-IEAGDFRAEGVEMGLE 245

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +    + +GK + + + G+G  M    L  L +  +L   +   I+ L+      GR +
Sbjct: 246 AT--RFRFEGKVVHLPYPGVGPVM--GALAALAVARMLDKPLAQTIERLAALRLPPGRMQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R R     G    I ++YNANP S KA ++ L Q  P   GR+  VLG M E+G+ +   
Sbjct: 302 RLRL----GGIDFIHDAYNANPLSFKAGMAFL-QAQP---GRKWLVLGRMAELGQEALKH 353

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H++ A + +  + + V++  F      +A   ++     ET++     +   +  GD+V 
Sbjct: 354 HLEAARLAAAVSPNLVFVGPFAKQQAAEAGGTAV-----ETIEEAVQLLFGKVQPGDLVY 408

Query: 449 VKSSNSCGFYRLINLLLEE 467
           +K+S S G  RL+ L   E
Sbjct: 409 LKASRSVGLERLLELWPRE 427


>gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
 gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
          Length = 475

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 185/420 (44%), Gaps = 31/420 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           + T    L+ IQ H    +PQ  + G        +  D+R++   + F A+KG  +D HD
Sbjct: 1   MMTLAKALELIQTH----IPQARLVGNGQLELARVHTDTRTLQDGDLFVALKGERFDAHD 56

Query: 56  FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F+  A   GA   V +  +  A +  + +P     D L AL  LA A R +    +IA+T
Sbjct: 57  FLSQAQAAGAVAAVASHGLETAGMAGIEVP-----DTLLALGALARAWRAQFDLPLIAVT 111

Query: 115 GSVGKTTTKEMLTIAL-----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           GS GKTT  +M+   L     +  +   A  G++NN IG+PL L RM       + E+GM
Sbjct: 112 GSNGKTTVTQMIASVLRAHVGAQGEAALATRGNFNNSIGMPLNLLRMTGAHRIAVLEMGM 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI  L  + +P +A++      H      +E +A     +   L + G       D
Sbjct: 172 NHPGEIAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLGFLPRDGVAIFPAGD 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
           ++  L    +     ++   FG++             ++ +W       + +  V  H  
Sbjct: 232 TYTPLWTELAAG---RSCLMFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIA 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L            +    K LS F P  GR +     +N    T++D+SYNA
Sbjct: 289 GRHNVRNALAAAACAHAAGVSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+ AAI+VL+++       ++ VLGDM E+G+    FH +   +     I+ V+  G
Sbjct: 349 NPDSVAAAIAVLAELP----APQLLVLGDMGEVGDNGPQFHAEAGALARQSGIAQVFALG 404


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 196/446 (43%), Gaps = 27/446 (6%)

Query: 33  DSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85
           DSRS+  A +  FFA+K    DG  FI    ++G    VV     N D +       +  
Sbjct: 102 DSRSLCFAEETLFFALKTDRNDGQHFIGDLYRRGVFNFVVEHLPDNYDTLYP----DVNF 157

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V + LGAL +LA   R      ++ ITGS GKT  KE L   LS          SYN+
Sbjct: 158 LKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNS 217

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPL++  M      G+FE G+S  GE+  L  +++P I V+T I  AH  NF+ +EE
Sbjct: 218 QIGVPLSVWLMNELTQIGVFEAGISMPGEMASLRSIIQPTIGVLTGIGTAHQENFASMEE 277

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             S K ++F   E    +  N DD        +S   G +  +S  K +NA   ++  ++
Sbjct: 278 KCSEKLKLFHDSE---AVIYNADDDLIARCMEQSGYKGRRMGWS-QKDRNAPLFVKTIEK 333

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               + +     GK  +     I      N +  + +   L    D   + +    P   
Sbjct: 334 KENTTTVTYVYNGKEGQYSIPFIDSASVVNSITCMAVSLYLGLSADDLDRRMQRLEPV-- 391

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R      Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + GE  
Sbjct: 392 -AMRLEVKTGQHGCTLINDSYNSDVKSLDIALDFMNRRPDHKGRRHTLILSDIYQSGESP 450

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS----SL 441
           +  + +++ ++    +      G  + A  D + +     + E++D    FI S    SL
Sbjct: 451 RELYREVSTLVQGRGVEKFIGIGPEISAQSDEI-KVREKFFFESVDS---FISSEVFRSL 506

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
            D +V+++K S S GF  L  LL ++
Sbjct: 507 RD-EVILLKGSRSFGFDLLTELLAQK 531


>gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 475

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 157/356 (44%), Gaps = 17/356 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R++   + F A++GP +D H F+  A                 +    +P   V 
Sbjct: 49  VHTDTRTVQAGDLFVALRGPRFDAHAFLAQARAG----GAAAALAQGGLADAGLPGIEVP 104

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147
           D L AL  LA   R +    +IA+TGS GKTT  +M+   L + +     A  G++NN I
Sbjct: 105 DSLAALALLAAGWRAQFDLPLIAVTGSNGKTTVTQMVAAILRAWQGDAALATQGNFNNAI 164

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTL R+       + ELGM+H GEI  L  + +P +A++      HL     +  +A
Sbjct: 165 GLPLTLLRLRARHTVAVVELGMNHPGEIAALAGIAQPGVALVNNAQREHLEFMHSVAAVA 224

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                +F  L   G      DD +  L +  +     +    FG     D    +W    
Sbjct: 225 RENGSVFASLPAHGVAVFPADDDYQALWQELAAG---RECLRFGAGGAVDGADARW---V 278

Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + +W + +      +    H  G H   N L          A +    + LS F P  GR
Sbjct: 279 DGAWALTLATPQGPVTTRLHIAGRHNVGNALAAAACALAAGAPLAALAQGLSGFSPVPGR 338

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            + +         +++D+SYNANP S++AAI++L+++       R+ VLGDM E+G
Sbjct: 339 SRSFSIRHAGRQISVVDDSYNANPDSVRAAIALLAELP----APRLLVLGDMAEVG 390


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 188/423 (44%), Gaps = 33/423 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G  P   ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YTIETIAERIGARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYS 61

Query: 63  KGAGLVVVNTDMVASI----------------GSLSIPVFG---VDDVLGALNKLAVAAR 103
           +G    VV+ +   +I                 S  IP      V + L AL KLA   R
Sbjct: 62  RGVRNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLAEQHR 121

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            + +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  
Sbjct: 122 EQFQIPVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELA 181

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           IFE G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +
Sbjct: 182 IFEAGISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VV 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSM 281
             N DD F     AKS     +  +S    +   F  ++ K + C+  S+  +++    M
Sbjct: 239 IYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNTFM 298

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 I     +N L  L     L    +   + ++   P      R      +    L
Sbjct: 299 LPF---IDDASIENSLNCLAACLYLMLPAEKITERMTTLEPV---AMRLEVKEGKNGCLL 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  ++++++   I
Sbjct: 353 INDSYNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLINSRGI 412

Query: 402 SHV 404
             +
Sbjct: 413 ERI 415


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 199/459 (43%), Gaps = 52/459 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGV 88
           DSRS+  P+E  FFA+K    DGH++I    ++G    VV TD+  +  S         V
Sbjct: 30  DSRSLCFPEETLFFALKTKRNDGHNYIADLYRRGVRNFVV-TDVPNNYDSAYSGANFLKV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL +LA   R      I+ ITGS GKT  KE L   +S          SYN+ +G
Sbjct: 89  IDTLEALQRLAERHRDAFDIPIVGITGSNGKTMVKEWLYQLMSPDMYVTRSPRSYNSQVG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  M      GIFE G+S  GE+  L  +++P IAV+T +  AH  NF   EE   
Sbjct: 149 VPLSVWLMDKQTRLGIFEAGISEKGEMSALRDIIQPTIAVLTNLGSAHQENFESAEEKCR 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            KA +F   +   TI  + DD     + A     G +  +S      +D Q   + +  E
Sbjct: 209 EKAILFHDAK---TIVYHADDKIVAGVVASLDYRGERLYWS-----TSDRQAPMYIKAVE 260

Query: 269 QSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +     +    ++  ++ G          I      N ++   I   L  D D   + + 
Sbjct: 261 K-----KETAATITYIYKGGIENWYSIPFIDDASVTNSIVCATIALHLGLDADKLDERML 315

Query: 319 VFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              P       KEG   R+ C       TLI++SYN++  S+  A+  +++   H   RR
Sbjct: 316 QLEPVAMRLEVKEG---RHGC-------TLINDSYNSDFNSLDIALDFMNRRPDHQGRRR 365

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             +L D+ + G      + D+ E+ +   +  +   G  + +  D     IH        
Sbjct: 366 TLILSDIFQSGVEPARLYRDVGELAAKRGVEKLIGIGPSISSYAD----EIHTQEKYCFS 421

Query: 432 GLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEE 467
            +  FI S +  G   +V+++K +   GF R+  LL+++
Sbjct: 422 TVADFIHSPVFKGLRNEVILLKGARRFGFDRITELLVQK 460


>gi|56807439|ref|ZP_00365398.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 342

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 22/342 (6%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +TY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  
Sbjct: 6   QTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGE 65

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL  F   ++IA  K +I +G+   G +    D      L         + +  FG  +
Sbjct: 66  AHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQ 119

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             D    +  + S      V     S+ +     G + A N ++   +  +L    +  I
Sbjct: 120 EIDVTGIQEDKDSLTFTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDII 175

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL       G    ++ A N     ++ + YNANP +M+  +   + I+ +  G++IAV
Sbjct: 176 AALQTVT-LTGNRTEWKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAV 232

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY----- 426
           L DM E+G+ S   H  L + L+  NI  +   G H+  L     +   +  VHY     
Sbjct: 233 LADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKAE 292

Query: 427 -SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +  + +  ++Q+ L   D +++K S+S    +L++ L+ +
Sbjct: 293 QEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLVTD 334


>gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
 gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 182/420 (43%), Gaps = 31/420 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           + T    L+ IQ H    +PQ  + G        +  D+R++   + F A+KG  +D HD
Sbjct: 1   MMTLAKALELIQTH----IPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHD 56

Query: 56  FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F+  A   GA   + +  +  A +  + +P     D L AL  LA A R +    +IA+T
Sbjct: 57  FLPQAQAAGAVAAIASHGLEAAGMAGIEVP-----DTLLALGALARAWRAQFDLPLIAVT 111

Query: 115 GSVGKTTTKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           GS GKTT  +M+   L +      +   A  G++NN IG+PL L RM       + E+GM
Sbjct: 112 GSNGKTTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGM 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI  L  + +P +A++      H      +E +A     +   L K G       D
Sbjct: 172 NHPGEIAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGD 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
            +  L    S     +    FG++ +           +  +W       + +  V  H  
Sbjct: 232 EYTPLWTELSAG---RPSLMFGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIA 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L            +    + LS F P  GR +     +     T++D+SYNA
Sbjct: 289 GRHNVRNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+ AAI+VL+++       ++ VLGDM E+G+    FH +   +     I+H +  G
Sbjct: 349 NPDSVAAAIAVLAELP----APQLLVLGDMGEVGDDGPQFHAEAGALAQQAGIAHFFALG 404


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 193/444 (43%), Gaps = 17/444 (3%)

Query: 30  ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           I  DSRS+  P+E  FFA+K    DGH +I    ++G     V     +S          
Sbjct: 27  ILTDSRSLCFPEETLFFALKSDRNDGHRYIPELYRRGVRNFAVEVLPDSSSSYTDANFLK 86

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L AL  LA   R      II ITGS GKT  KE L   L   +       SYN+ I
Sbjct: 87  VADTLKALQMLAKKHRETFHIPIIGITGSNGKTMVKEWLYQLLMPERFVTRSPRSYNSQI 146

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +  +   G+FE G+S   E+  L  ++RP I V+TTI  AH  NF+ IEE  
Sbjct: 147 GVPLSVWLLNENTQIGLFEAGISRPKEMDALREIIRPTIGVLTTIGTAHQENFASIEEKC 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  +F   +   TI    D++    L ++    G    +S  K +NA   + + ++ +
Sbjct: 207 REKLRLFRHAQ---TIVYCTDNALTARLISEESLEGEPIAWS-TKDENAQLYVSRIEKQA 262

Query: 268 EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           E + +  + +     +     I     +N +    +   L        K ++   P    
Sbjct: 263 EHTTVSYRYKNHIEGQYTLPFIDDASVENSITCTAVALYLGIAPAALAKRMAHLEPV--- 319

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R      Q   TLI++SYN++  S+  A+  +++   H   +R  +L D+ + G    
Sbjct: 320 AMRLEVKEGQHGCTLINDSYNSDIHSLDIALDFMNRRPDHKGRKRTLILSDIEQTGRKPA 379

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--- 443
             + +++ + +   +      G  + A  D++  +    + +       FI S   D   
Sbjct: 380 DLYREVSHLAAKRRVEKFIGIGRQLCAHADSIGITDKCFFPDCES----FIHSEAFDKLR 435

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
            +V+++K +   GF RL +LL+++
Sbjct: 436 NEVILIKGARRFGFDRLTDLLVKK 459


>gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
 gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
          Length = 465

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 208/458 (45%), Gaps = 35/458 (7%)

Query: 24  QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           Q  V+  S+DSR I  + +    +FA KG   DG  F+ + +  G    V + D      
Sbjct: 26  QKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKYLIDIGVKCFVCSKDREL--- 82

Query: 80  SLSIPVFGVD---------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            L I     D         +V+  L  LA     +++   IAITGS GKTTTKEML   L
Sbjct: 83  -LCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAITGSNGKTTTKEMLYSIL 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE+  +  ++ P I ++T
Sbjct: 142 SERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGEMNIIAEILNPEIVIVT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIY 248
            ++ AH+  F  ++ +A  K++I    + T  + LN     +  L+  AKS    I   Y
Sbjct: 202 NVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQYVYLEEIAKSVNPNINIFY 259

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                +  + Q+R +   +++   +   +G    ++    G H   N +  + +   L  
Sbjct: 260 ----FEFHNLQIRSFSFINDKFSYDFTYKGCDYSILLP--GKHNICNAISCINLALFLGL 313

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +     L     ++GR +  R       + ++++SYN N +S  A   ++  +    +
Sbjct: 314 SENEIRNGLLHADFQKGRAELVRIKD----YLVLNDSYNGNLSSFMALKEMILDLEI--K 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHY 426
            ++I VLG   E+G+ +   H    E + L N   ++L G    A+K  D+L  +  + Y
Sbjct: 368 DKKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKIFLIGEEFQAVKRVDSLSSNSCLFY 427

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +       ++L  G  + +K S +    R+++ L
Sbjct: 428 FNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465


>gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
 gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
          Length = 475

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 182/420 (43%), Gaps = 31/420 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           + T    L+ IQ H    +PQ  + G        +  D+R++   + F A+KG  +D HD
Sbjct: 1   MMTLAKALELIQTH----IPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHD 56

Query: 56  FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F+  A   GA   + +  +  A +  + +P     D L AL  LA A R +    +IA+T
Sbjct: 57  FLPQAQAAGAVAAIASHGLEAAGMAGIEVP-----DTLLALGALARAWRAQFDLPLIAVT 111

Query: 115 GSVGKTTTKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           GS GKTT  +M+   L +      +   A  G++NN IG+PL L RM       + E+GM
Sbjct: 112 GSNGKTTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGM 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI  L  + +P +A++      H      +E +A     +   L K G       D
Sbjct: 172 NHPGEIAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGD 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
            +  L    S     +    FG++ +           +  +W       + +  V  H  
Sbjct: 232 EYTPLWTELSAG---RPSLMFGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIA 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L            +    + LS F P  GR +     +     T++D++YNA
Sbjct: 289 GRHNVRNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+ AAI+VL+++       ++ VLGDM E+G+    FH +   +     I+H +  G
Sbjct: 349 NPDSVAAAIAVLAELP----APQLLVLGDMGEVGDNGPQFHAEAGALAQQAGIAHFFALG 404


>gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
 gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
          Length = 465

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 208/459 (45%), Gaps = 37/459 (8%)

Query: 24  QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           Q  V+  S+DSR I  + +    +FA KG   DG  F+ + +  G    V + D      
Sbjct: 26  QKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKYLIDIGVKCFVCSKDREL--- 82

Query: 80  SLSIPVFGVD---------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            L I     D         +V+  L  LA     +++   IAITGS GKTTTKEML   L
Sbjct: 83  -LCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAITGSNGKTTTKEMLYSIL 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE+  +  ++ P I ++T
Sbjct: 142 SERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGEMNIIAEILNPEIVIVT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTI 247
            ++ AH+  F  ++ +A  K++I    + T  + LN       + E + AKS    I   
Sbjct: 202 NVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQHVYLEEI-AKSVNPNINIF 258

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y     +  + Q+R +   +++   +   +G    ++    G H   N +  + +   L 
Sbjct: 259 Y----FEFHNLQIRSFSFVNDKFSYDFTYKGCDYSILLP--GKHNICNAISCINLALFLG 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +     L     ++GR +  R       + ++++SYN N +S  A   ++  +    
Sbjct: 313 LSENEIRNGLLHADFQKGRAELVRIKD----YLVLNDSYNGNLSSFMALKEMILDLEI-- 366

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVH 425
           + R+I VLG   E+G+ +   H    E + L N   V+L G    A+K  D+L  +  + 
Sbjct: 367 KDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKVFLIGEEFQAVKRVDSLSSNSCLF 426

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Y    +       ++L  G  + +K S +    R+++ L
Sbjct: 427 YFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV  ++ A + S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG-ELPADMKSFQDA 82

Query: 85  VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  + + L  L KLA   R + +  +I ITGS GKT  KE L   LS  +       SY
Sbjct: 83  NFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH  NF  +
Sbjct: 143 NSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++    K  +F+  +    I  + D+       AKS     +  +S   ++   F +   
Sbjct: 203 QDKCMEKLTLFKDCD---VIIYDGDNELISSCVAKSLFTSREIAWSKKDNERPLF-IESI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    + ++ +  G   E     I     +N L  L +   +    +   + ++     
Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVSPEQITERMARL--- 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    LI++SYN++ AS+  A+  +S+ S   E +R  +L DM E G+
Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKEKKRTLILSDMLETGQ 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
             +  +  +AE++    +  +   G  +   + A  R  I  ++  T + L   ++S L+
Sbjct: 376 SGKLLYRQVAELVHSRGVEKIIGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
            G   +V++VK S +  F R+ + L
Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454


>gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 457

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 207/481 (43%), Gaps = 49/481 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W    L     GH +G      +     D+R +   + F A+     DGHDF+  A+  G
Sbjct: 4   WDPSQLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGARDGHDFVEQALAAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG  +V+  +      L IP   V+D L A+  +  A R      ++ +TGS GKT+TKE
Sbjct: 64  AGSALVSRPL-----DLPIPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVR 183
           ML + L      +A  G++NN IGVP+TL  +  +  +F + E G++  GE+  L  ++ 
Sbjct: 119 MLRLVLGE-SVAHATAGNWNNRIGVPMTLFGLDSERQEFAVIEAGINQPGEMNHLGEMIA 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-----FLNYDDSFFELLKAK 238
             + V+T I  AHL     +E IA+ K+++      +  +      LNY  + F   +A+
Sbjct: 178 ADVVVVTAIEAAHLELLQTVETIANEKSQLMAHARPSALLILPAELLNY--AAFNRYRAR 235

Query: 239 SHAL---------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           + A+         G+ +  S+ + +     L      +     E QL  +S      GI 
Sbjct: 236 AVAVVEAGSPVPEGVLSTVSY-RFEGPRIVLSGEYFAAVGGRCEFQLASQS-----RGI- 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N  + +   ++L      +   +  + P   RG+    A  Q F+    + YNAN
Sbjct: 289 ---RRNAALAMVTAAVLGQPTKVSRVGIENWQPSGDRGRLIESAGRQ-FYV---DCYNAN 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PASM  A+   +   P  E  R  VLG M E+G  +   H +  E         V+L G 
Sbjct: 342 PASMADALDAFAHSVPD-EVPRCYVLGAMNELGADAPRLHRESIEGHDFRPQDRVYLVGP 400

Query: 410 HVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLLL 465
             L      AL ++   + + E ++      +S + D    + +K S S   YRL  LL 
Sbjct: 401 QALLAGYAQALEKAGSQLSFGEKVENF----ESEIADFKGALFLKGSRS---YRLEQLLP 453

Query: 466 E 466
           E
Sbjct: 454 E 454


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 180/407 (44%), Gaps = 15/407 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T  D+ + I    IG  P   ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YTIEDIARIIGARRIGDTPAA-IDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIRDLYT 61

Query: 63  KGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +G    VV+ + +  + + +       +  V + L AL KLA   R R +  +I ITGS 
Sbjct: 62  RGVRNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I E G+S  GE+R 
Sbjct: 122 GKTIVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNGQTELAILEAGISEPGEMRA 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F      
Sbjct: 182 LQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEFINNCVG 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           KS  L  + I    K       + K ++  + + +  +            I     +N L
Sbjct: 239 KS-MLSAREIAWSRKDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPFIDDASIENSL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L    +   + ++   P      R      +    LI++SYN++  S+  A+
Sbjct: 298 NCLAACLYLMLPAEQITERMAKLEPI---AMRLEVKEGKNGCLLINDSYNSDLGSLDIAL 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             L + S     +R  +L D+ E G+ + + +  +A++++   I  +
Sbjct: 355 DFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERI 401


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 205/461 (44%), Gaps = 24/461 (5%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILH 59
           N ++T  D+   +   S  I P   VN ++ DSR I  A    FFA+ G   DGH ++  
Sbjct: 3   NKIYTVQDIATIVAVASELIDPSAIVNTLAYDSRKITDAKHALFFALPG-RRDGHQYVQE 61

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + G    VV  + V     L+     V D L AL +LA   R +    +IAITGS GK
Sbjct: 62  AYRAGVRNFVVRPEAVNITDYLNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  KE L   LS          SYN+ +GVPL+L +M    +  I E G+S +GE+  + 
Sbjct: 122 TIVKEWLYQLLSPEYHIVRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAIE 181

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN--YDDSFFELLKA 237
            +V+P I ++T I  AH   F+  +E    K ++F+  +K   I  N  Y DS  E +  
Sbjct: 182 RMVKPTIGILTNIGHAHDDGFASTKEKTIEKLKLFKDADK---IVYNPTYVDSAIE-VPG 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           + H       +++   K A  ++    K+   Q  +E     +S  +    +     +N+
Sbjct: 238 RHH-------FTWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENL 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    ++  +  +    +  +    P   R +  +   N    ++ID+SY+ + +S+  A
Sbjct: 291 VCCWALMLAIGYEAMVIVDRVKRLLPVSMRLELKKGINNN---SIIDDSYSNDLSSLLIA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L Q   H   R++ +L D+  +G+   + +  +A +L    +  +   G H L    
Sbjct: 348 LDFLKQQQQH--SRKMLILSDLPTVGQNQTALYTKVASMLEGKGLDRLIGVGKH-LRQHA 404

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           AL R +   + +T + L   I    +    +++K S   GF
Sbjct: 405 ALFR-MDTQFFDTTEQLLTNIPKLEIRDSTILIKGSRVFGF 444


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 182/386 (47%), Gaps = 29/386 (7%)

Query: 27  VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-I 83
           +  +S+DSRS+   E+  FFA+KG ++DGHD++    ++G    VV T + A    LS  
Sbjct: 32  ITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVRNFVV-TGLRAGFLPLSGA 90

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             F VD+VL AL +LA   R + KA ++ ITGS GKT  KE L   LS     Y    SY
Sbjct: 91  NFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIVKEWLYQLLSDEPGIYRSPRSY 150

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +GVPL+L  M V     I E G+S  GE+  L  ++RP I + T +  AH  NF   
Sbjct: 151 NSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQAMIRPEIGIFTHLGDAHGENFESR 210

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++  + KA +F    +     +  +    + + ++      K I+  G  KNA  ++ + 
Sbjct: 211 QQKLAEKAILF----RDCRCIIGREGEALDYIASRLRPDVKKMIW--GSGKNATVRVEEK 264

Query: 264 KQCSEQSWMEVQLQGKSMEV---VHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKAL 317
              + +  + V  +  +  +         +    N +  L   GI  +  A+    ++ L
Sbjct: 265 GSTAHERLVAVGYEHVAFTLSIPFPDEASFENCMNAVCVLLLEGISPVFIAERVARLQPL 324

Query: 318 SV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ++    K+G     RC        LI++ YN++ AS + A++ L+      E  ++ +L 
Sbjct: 325 AMRMEIKDGIN---RC-------VLINDYYNSDAASFQLALNTLAMQDAGRE--KVVILS 372

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  + G   +  + ++A +L    +S
Sbjct: 373 DFVDTGTGERELYREVALLLRKAKVS 398


>gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 453

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 184/418 (44%), Gaps = 20/418 (4%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ +  +  A++ GA  +     MV       +P   V++   AL  L    R +    +
Sbjct: 52  YNPNPDVEQAIKNGAAAI-----MVPCKIDCKVPQIIVENTDTALRTLCKHYRKKFDIPV 106

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GKT+TK+++ + LS    T+  + + N+ IGVP+T  ++       + E+G+ 
Sbjct: 107 IAVTGTSGKTSTKDLIALVLSERFNTHKTLSNVNDLIGVPMTTLQINDTHQISVIEIGLR 166

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G I+    +VRP I VIT+I  AH+S+F   E I  AK E+    +K   + +N DD 
Sbjct: 167 SYGHIKKGVDIVRPSIGVITSIGTAHISSFGSKENIMKAKMEVATYFDKNDILIINGDDP 226

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIG 289
               +K K +      I     +   ++  +  +   E+    +   +G+         G
Sbjct: 227 LLSTIKEKPYK-----IIRISLNGKGEYNAKDVRDLGEKGVEFKCDYKGEEHLFKLKVPG 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N +  + I  +   +VD   + +  F P   R    +   N     +I + Y + 
Sbjct: 282 IHNVYNAMFAIAIGDLFDIEVDDVKRGIVKFQPDNLRVNIVKMKNNA---KIILDCYTSE 338

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSG 408
             SMKA I+VL      G  ++IAVLG M   G L++  H ++   V+   +I  +   G
Sbjct: 339 LDSMKAGINVLKSF---GGNKKIAVLGSMYGCGNLTEEIHREIGRYVIGKCDI--LVTVG 393

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   + +     +   + ET +    ++++ +   DV+++         ++ N LL+
Sbjct: 394 GNARYINEEAKDKLEGKHCETKEEACSYLKNIIQKDDVILINGGRILKLEQIANYLLQ 451


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 197/450 (43%), Gaps = 33/450 (7%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85
           DSRS+  P+E  FFA+K    DG+ +I     +G    VV     N DM+    +     
Sbjct: 30  DSRSLCFPEETLFFALKSERNDGYHYIPELYSRGVRNFVVEAIPENWDMLYPQSNF---- 85

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V   + AL +LA   R      +I ITGS GKT  KE L   LS  K       SYN+
Sbjct: 86  LEVSKTIEALQRLATCHRAEFHVPVIGITGSNGKTVVKEWLYQLLSPNKVVTRSPRSYNS 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPL++  +    + G+FE G+S  GE++ L  +++P I V T++  AH  NF+ +EE
Sbjct: 146 QIGVPLSVWLLNEQTEVGVFEAGISERGEMKALREIIQPTIGVFTSLGEAHQENFASLEE 205

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLR 261
               K  +F     T  I    D+       + L  K+  LG        K  NA   ++
Sbjct: 206 KCMEKLCLF---RDTNAIVYPLDEELVVRCIKTLNYKNTILGWSK-----KDSNATLFVK 257

Query: 262 KWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + K+    + +  V  QGK        I     +N + +  I   L  +V T  + +   
Sbjct: 258 EIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSITSAIICLHLGVEVKTLAERMPQL 317

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P      R      Q   TLI++SYN++  S+  A+  +++   H   +R  +L D+ +
Sbjct: 318 EPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRKRTLILSDIFQ 374

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            GE  ++ +  +A +     +      G  ++  + A  +    ++  T+     FI S 
Sbjct: 375 SGEDEKTLYQRVAFLAEKRGVEKFIGIGEGLIRQRKAFNKFGKKYFFATVGS---FISSE 431

Query: 441 L---VDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  +V+++K +   GF +L  LL+ +
Sbjct: 432 AFRELRDEVILLKGARQFGFDQLTELLVNK 461


>gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 488

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 165/367 (44%), Gaps = 29/367 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGS GKT+TK++L   L+ +  T A  GS+NN +G P T  R        + EL  
Sbjct: 130 VVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELGHPWTALRADASTRHLVLELSA 189

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLN 226
              G I  L  +  P I V+  +  AHL  F   E IA AK E+ E L      G   LN
Sbjct: 190 RGPGHIAALCRVAPPRIGVVLNVGRAHLGEFGSPEAIAQAKGELVEALPAGGDGGVAVLN 249

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VV 284
            DD     +  ++ A     + S G+S  A   +R     SE      +L   + E  V 
Sbjct: 250 ADDPAVIGMAPRTAA----RLVSVGRSAGA--TVRAVDVGSEAGRARFRLVSPAGEADVA 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLI 342
              +G H   N L    +   L A  D+   +L    P      R+R   A      T++
Sbjct: 304 LRLVGTHHVGNALAAAAVALELGATPDSVAASLGAAGPV----SRWRMEVADRADGVTVV 359

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++YNANP SM+AA++ L+ +   G GRR  AVLG M E+G    + H ++A       +
Sbjct: 360 NDAYNANPESMRAALTALTDL---GRGRRTWAVLGRMAELGAQEAAAHAEVAAAAGELGV 416

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                    +LA+ +    S   H ++        +++ +  GDVV+VK+S + G  R+ 
Sbjct: 417 G-------TLLAVGEPGYGSAARHVADPAA-ALALLRAEVTPGDVVLVKASRAVGLDRVA 468

Query: 462 NLLLEEF 468
             LL++ 
Sbjct: 469 AALLDDL 475


>gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 511

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 190/382 (49%), Gaps = 13/382 (3%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           S++ P F V+D    L  L ++A+LRS     ++AITGS GKT+T+ M+T  L   +K  
Sbjct: 107 SVTTPQFIVEDSWKFL--LELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE-EKVL 163

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPA 195
              G++N    VPL ++++  + D    E+ ++ L   +   +++L++  IA++T+I  A
Sbjct: 164 ENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQDIAIVTSIGEA 223

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGK 252
           HLS+    + +A  KA+IFEGL++ G   +N D   + F  L+ A         +YS   
Sbjct: 224 HLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHD 283

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           + + D  +++  Q  E   + V   G+ + +        M  N L  L +   L  ++  
Sbjct: 284 A-SRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISP 342

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            IK    F P     +R       G  FT ID+++NA+  SMK AI+    I P  +G +
Sbjct: 343 YIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNK 402

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETM 430
           + +LG + ++G+ ++  H  + E L+    +H++  G H  L  ++       + + +++
Sbjct: 403 VLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKTDDRLQWFDSL 462

Query: 431 DGLFLFIQSSLVDGDVVVVKSS 452
             L   +++ L++  +V+ K S
Sbjct: 463 QELCNDLETKLIEDSLVLAKGS 484


>gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
 gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
          Length = 496

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 190/382 (49%), Gaps = 13/382 (3%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           S++ P F V+D    L  L ++A+LRS     ++AITGS GKT+T+ M+T  L   +K  
Sbjct: 92  SVTTPQFIVEDSRKFL--LELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE-EKVL 148

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPA 195
              G++N    VPL ++++  + D    E+ ++ L   +   +++L++  IA++T+I  A
Sbjct: 149 ENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQDIAIVTSIGEA 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGK 252
           HLS+    + +A  KA+IFEGL++ G   +N D   + F  L+ A         +YS   
Sbjct: 209 HLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHD 268

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           + + D  +++  Q  E   + V   G+ + +        M  N L  L +   L  ++  
Sbjct: 269 A-SRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISP 327

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            IK    F P     +R       G  FT ID+++NA+  SMK AI+    I P  +G +
Sbjct: 328 YIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNK 387

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETM 430
           + +LG + ++G+ ++  H  + E L+    +H++  G H  L  ++       + + +++
Sbjct: 388 VLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKTDDRLQWFDSL 447

Query: 431 DGLFLFIQSSLVDGDVVVVKSS 452
             L   +++ L++  +V+ K S
Sbjct: 448 QELCNDLETKLIEDSLVLAKGS 469


>gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252]
          Length = 538

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 161/354 (45%), Gaps = 23/354 (6%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFEL 167
           TII ITGS GKT+TK ++   LS   +  A  GSYN  +G+   +  ++  +    + E+
Sbjct: 190 TIIGITGSYGKTSTKFIIAEILSLRYQVLATPGSYNTPMGICKVINEQLRPEHQVLVLEM 249

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+ H G+IR L  + RP I V+T + P HL     IE IA  K+E+       G + LN 
Sbjct: 250 GIRHPGDIRELCAIARPDIGVVTAVGPMHLETMGSIEAIAREKSELVACTRPGGPVVLNA 309

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           DD     +  ++   G     S   +  AD   R      E +   V+ +  + +V    
Sbjct: 310 DDPRVAAMAERAR--GPVWRVSVEGNPEADLVARDITYGPEGTRFVVRDETGTEQVFQTR 367

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +  I    +     A++   P E R +  R    +G  T+ID+++
Sbjct: 368 LLGRHNVLNILLALAVGRIFGLRLRQMAHAVARLRPVEHRLQLRR----EGPITVIDDAF 423

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           N+NP   + A+ +L Q      GRRI V   M E+G      +  L   ++ +    V +
Sbjct: 424 NSNPVGARNALEILGQFR---TGRRIVVTPGMVELGAREAEENRALGRFMAQHVDLAVLI 480

Query: 407 SGFHVLALKDALPRS------IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSS 452
                L +++ L  +      IHV  S  E  D    F+++ L  GDVV+ ++ 
Sbjct: 481 GPRRTLPIQEGLREAGFPEDRIHVFRSLFEAQD----FLKTYLQPGDVVLYEND 530


>gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
 gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
          Length = 464

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 24  QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           Q  V+  S+DSR I  + +    +FA KG   DG  F+ + +  G    V + D      
Sbjct: 26  QKIVSFYSLDSREINAKNSSASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKD----CE 81

Query: 80  SLSIPVFGVDD---------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           SL +     D+         V+  L  LA     R+    IAITGS GKTTTKEML   L
Sbjct: 82  SLCLEYLNRDENLVFLLTSNVVILLQNLAAHFITRTSFKRIAITGSNGKTTTKEMLYSIL 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE+  L  ++ P I ++T
Sbjct: 142 SERYKTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYIGEMNLLAEILNPEIVIVT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIY 248
            I+ AH+  F  +E + + K +I    + T  + LN    +   L+  AKS   GI   Y
Sbjct: 202 NISYAHMQAFEDLEIVTAEKGKIMT--KSTQMVILNESCPYHLHLRVMAKSINPGINIFY 259

Query: 249 SFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                   DF   Q+R +   +++ + +   +G    ++    G H   N +  + +  +
Sbjct: 260 -------FDFHSLQIRSFAFVNDKFFYDFTYKGFDYSILLP--GQHNIFNAISCIHLALL 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +     L     ++GR +  R       + ++++SYN N  S  A   ++  +  
Sbjct: 311 LGLSENEIRNGLLHADFQKGRAELLRVKD----YLILNDSYNGNLGSFMALKEMI--LGL 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +G++  +LG   E+G+ +   H      + L N    +L G     +K     ++ ++
Sbjct: 365 EIKGKKFIILGAFKELGKFAYEVHKTAIREVVLMNFDKGFLIGEEFQEVKKIENLALDNL 424

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y    +    +   +L     + +K S S    R+++ L
Sbjct: 425 FYFSNFENFIDYFVKNLESECFIAIKGSRSNRLERILDYL 464


>gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi]
          Length = 397

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 188/381 (49%), Gaps = 39/381 (10%)

Query: 99  AVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           A+A+ L  K +   IAITGS GKTTTKEML   LS   KTY   G+ N+ IG+PL++ R+
Sbjct: 41  ALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILRV 100

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F  ++ IA  K++I   
Sbjct: 101 EGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFKELQAIAFEKSKI--- 157

Query: 217 LEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + K   IF +N  + +   L  +AK     +K +Y        DF+    K  S      
Sbjct: 158 IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDFENLSIKSFS------ 204

Query: 274 VQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADVDTAIKALSVFHPKEG 325
             L GK S + V+ G  Y +      N+   +G +++   L        + L     ++G
Sbjct: 205 -FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKG 263

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +     L +  + ++++SYN N  S  A  +++  ++   + ++  VLG   E+GEL+
Sbjct: 264 RAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNKKFIVLGSFKELGELA 317

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVD 443
              H DL +     N   ++L G   L ++D+  L      ++SE  D    F   SL  
Sbjct: 318 YKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE-FDKFIDFFLKSLEP 376

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +V+K S      R++N +
Sbjct: 377 SVFIVIKGSRFNRLERILNYI 397


>gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae TN]
 gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
 gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl
           -2,6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Mycobacterium leprae]
 gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae]
 gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 517

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 205/488 (42%), Gaps = 63/488 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVVNTDMVASI 78
           +  DSR++ P   F A+ G   DGHD    A+             G   +VV  D     
Sbjct: 34  VEFDSRAVGPGGLFLALPGARSDGHDHAASAIAAGAVAVLAARPVGVPAIVVAPDPRTGD 93

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIAL 130
           G L+  +    D  GA    A+A   ++ A        TII ITGS GKT+TK+++ + L
Sbjct: 94  GGLTGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAVVL 153

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             + +  A   S+NN +G P T+ R     D+ I E+     G I  L  +  P I V+ 
Sbjct: 154 ELLGEVVAPPESFNNELGHPWTVLRATRSTDYLILEMSARRPGNIAALAAIAPPKIGVVL 213

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---I 247
            +  AHL  F   E IA  K E+ + + ++G + LN DD     +   + A  I+     
Sbjct: 214 NVGTAHLGEFGSREAIARTKTELPQAIMQSGVVILNVDDPAVAAMADATVARVIRVSRGS 273

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----VHHGI-GYHMAQNMLMTLGI 302
           YS   S N+           E +     L  +        +  G+ G H   N L    +
Sbjct: 274 YSHPGSPNSPDVWTGPVSLDELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAV 333

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ 
Sbjct: 334 GLECGASVEEVAVALAATGPVS--RHRMQVTTRADGVTVIDDTYNANPDSMRAGLQALAW 391

Query: 363 IS---------PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           I+         P    RR  AVLG+M E+GE S + H  +  +    ++S + + G    
Sbjct: 392 IAHGGTHDKNQPGSCARRSWAVLGEMAELGEDSITEHDRIGRLAVRLDVSRLVVVGGG-- 449

Query: 413 ALKDALPRSIH-VHYSETMDG--------------LFLFIQSSLVDGDVVVVKSSNSCGF 457
                  RSI+ +H    M+G                  +++ +  GDVV++K+S+S G 
Sbjct: 450 -------RSINAMHRGAVMEGSWGLETVNVADPAAALTLLRAEVRPGDVVLIKASHSVGL 502

Query: 458 YRLINLLL 465
             L ++L+
Sbjct: 503 GALADVLV 510


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV  ++ A + S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRSFVVG-ELPADMQSFQDA 82

Query: 85  VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  + + L  L KLA   R + +  +I ITGS GKT  KE L   LS  +       SY
Sbjct: 83  NFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH  NF  +
Sbjct: 143 NSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++    K  +F+  +    I  + D+       AKS     +  +S   ++   F +   
Sbjct: 203 QDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERPLF-IESI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    + ++ +  G   E     I     +N L  L +   +    +   + ++     
Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITERMARL--- 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    LI++SYN++ AS+  A+  +S+ S     +R  +L DM E G+
Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S+  +  +AE++    +  +   G  +   + A  R  I  ++  T + L   ++S L+
Sbjct: 376 SSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
            G   +V++VK S +  F R+ + L
Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV  ++ A + S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVG-ELPADMQSFQDA 82

Query: 85  VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  + + L  L KLA   R + +  +I ITGS GKT  KE L   LS  +       SY
Sbjct: 83  NFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH  NF  +
Sbjct: 143 NSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++    K  +F+  +    I  + D+       AKS     +  +S   ++   F +   
Sbjct: 203 QDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERPLF-IESI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    + ++ +  G   E     I     +N L  L +   +    +   + ++     
Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITERMARL--- 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    LI++SYN++ AS+  A+  +S+ S     +R  +L DM E G+
Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S+  +  +AE++    +  +   G  +   + A  R  I  ++  T + L   ++S L+
Sbjct: 376 SSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
            G   +V++VK S +  F R+ + L
Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV  ++ A + S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVG-ELPADMQSFQDA 82

Query: 85  VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  + + L  L KLA   R + +  +I ITGS GKT  KE L   LS  +       SY
Sbjct: 83  NFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH  NF  +
Sbjct: 143 NSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++    K  +F+  +    I  + D+       AKS     +  +S   ++   F +   
Sbjct: 203 QDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERPLF-IESI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    + ++ +  G   E     I     +N L  L +   +    +   + ++     
Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITERMARL--- 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    LI++SYN++ AS+  A+  +S+ S     +R  +L DM E G+
Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S+  +  +AE++    +  +   G  +   + A  R  I  ++  T + L   ++S L+
Sbjct: 376 SSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
            G   +V++VK S +  F R+ + L
Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 178/393 (45%), Gaps = 10/393 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQK 63
           T  ++   +    IG  P   ++ I  DSRS+  P+E  FFA+K    DGH +I    ++
Sbjct: 4   TIEEITSVMGAERIGNAP-ARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV+         +      V + L AL +L    R + +  ++ ITGS GKT  K
Sbjct: 63  GVRNFVVSDLPENGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  +    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPERIITRSPRSYNSQIGVPLSVWLLNEHTELGIFEAGISEMGEMEALRPIIQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NF+ +++    K ++F+  +    I  N D+       AKS    
Sbjct: 183 PTIGVLTNIGGAHQENFTSLQDKCMEKLQLFKDCD---VIIYNGDNELISSCVAKSLFTA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S   ++   F +    +    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSMKDTERPLF-IESISKDETGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + +    P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVSPEVIAERMLRLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           +     +R  +L D+ E G++S+  +  +A+++
Sbjct: 356 TEDKGRKRTLILSDILESGQVSKLLYRQVADLV 388


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 181/422 (42%), Gaps = 30/422 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T  D+ + I    IG  P   ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YTIEDIARIIGARRIGDRPAA-IDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIRDLYA 61

Query: 63  KGAGLVVVNTDMVASIG-----------------SLSIPVFG---VDDVLGALNKLAVAA 102
           +G    VV+ + +  +G                 +   P F    V + L AL KLA   
Sbjct: 62  RGVRNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKLAEQH 121

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R R +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    + 
Sbjct: 122 RDRFQIPVIGITGSNGKTIVKEWLHQLLSPERMITRSPRSYNSQIGVPLSVWQMSEQTEL 181

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 182 AILEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---V 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD F      KS  L  + I    K       + K ++  + + +  +       
Sbjct: 239 VIYNGDDEFINNCVGKS-MLAAREIAWSRKDMERPLYISKVEKQEDSTVISYRYLDMDNT 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N L  L     L    +   + ++   P      R      +    LI
Sbjct: 298 FTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPV---AMRLEVKEGKNGCLLI 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++  S+  A+  L + S     +R  +L D+ E G+ + + +  +A++++   I 
Sbjct: 355 NDSYNSDLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIE 414

Query: 403 HV 404
            +
Sbjct: 415 RI 416


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 213/492 (43%), Gaps = 52/492 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           ++   + ++I    +G VP   ++ +  DSRS+  P+E  FFA+     DG  +I     
Sbjct: 3   YSIESITESIGARRVGNVP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIADLYA 61

Query: 63  KGAGLVVVNTDMVASI--GSLSI------PVFG----------VDDVLGALNKLAVAARL 104
           +G    V++ +    I  G L I      P             V + L AL KLA   R 
Sbjct: 62  RGVRNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAEQHRN 121

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I
Sbjct: 122 RFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAI 181

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           FE G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    + 
Sbjct: 182 FEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLFKNCD---VVI 238

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGK-SM 281
            N DD F     AKS     +  +S    +   +  ++ K   C+  S+  + +    ++
Sbjct: 239 YNGDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKQDDCTVISYRYLDMDNTFTL 298

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCAL 334
             +         +N L  L     L    +   + ++   P       KEG+     C  
Sbjct: 299 PFIDDA----SIENSLNCLAACLYLMLPAERITERMAKLEPIAMRLEVKEGKNN---C-- 349

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 LI++SYN++  S+  A+  L + S     RR  +L D+ E G+ + + +  +A+
Sbjct: 350 -----LLINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLILSDILETGQNTPTLYRQVAQ 404

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSS 452
           +++   I  +   G  + +   A   +I   +      L   IQ     ++ +++++K +
Sbjct: 405 LVNSRGIERIIGVGNEISSC--AARFNIEKTFYPDTAALIRTIQRGELRLENEIILIKGA 462

Query: 453 NSCGFYRLINLL 464
              GF  L  +L
Sbjct: 463 RKFGFDSLTEVL 474


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV  ++ A + S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG-ELPADMKSFQDA 82

Query: 85  VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  + + L  L KLA   R + +  +I ITGS GKT  KE L   LS  +       SY
Sbjct: 83  NFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH  NF  +
Sbjct: 143 NSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++    K  +F+  +    I  + D+       AKS     +  +S   ++   F +   
Sbjct: 203 QDKCMEKLTLFKDCD---VIIYDGDNELISSCVAKSLFTSREIAWSKKDNERPLF-IESI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++ +  + ++ +  G   E     I     +N L  L +   +    +   + ++     
Sbjct: 259 QKGAHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVSPEQITERMARL--- 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    LI++SYN++ AS+  A+  +S+ S     +R  +L DM E G+
Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
             +  +  +AE++    +  +   G  +   + A  R  I  ++  T + L   ++S L+
Sbjct: 376 SGKLLYRQVAELVHSRGVEKIIGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
            G   +V++VK S +  F R+ + L
Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 188/415 (45%), Gaps = 25/415 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           ++   + +++    +G VP   ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YSIESITESMGARRVGSVP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYA 61

Query: 63  KGAGLVVVNTDMVASIGSLSI--------PVFG---VDDVLGALNKLAVAARLRSKATII 111
           +G    VV+ +    I S  +        PV     V + L AL KLA   R + +  +I
Sbjct: 62  RGVRNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKT  KE L   +S  +       SYN+ IGVPL++ +M    +  IFE G+S 
Sbjct: 122 GITGSNGKTIVKEWLHQLISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISE 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F
Sbjct: 182 PGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFKNCD---VVIYNGDDEF 238

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                AKS     +  +S    +   +  ++ K ++C+  S+  + +           I 
Sbjct: 239 ISNCVAKSMLSAREIAWSRKDMERPLYISKVEKKEECTVISYRYLDMDNT---FTLPFID 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N L  L     L    +   + ++   P      R      +    LI++SYN++
Sbjct: 296 DASIENSLNCLAACLYLMLPAEKITERMAKLEPV---AMRLEVKEGKNGCLLINDSYNSD 352

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             S+  A++ L + S     +R  VL D+ E G+ + + +  +A++++   I  +
Sbjct: 353 LGSLDIALNFLYRRSLVNGLKRTLVLSDILETGQNTPTLYRQVAQLVNSRGIERI 407


>gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
 gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
          Length = 482

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 180/428 (42%), Gaps = 46/428 (10%)

Query: 5   WTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           W+   L  A  G  +  G  P   +    IDSR+  P   F  I     DGHDFI  A+ 
Sbjct: 3   WSPERLAAAASGRLLRAGTRP---IQAAFIDSRTPTPGGLFVPIVA-ARDGHDFIPAALA 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V      ++      V  V D L  L +LA  AR +    ++AITGS GKTTT
Sbjct: 59  AGASATLVGPGRGEAVPEGDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVD---FGIFELGMSHLGEIRFL 178
           +  +  AL +      C  G++NNH+G+PLTL       +     + ELGMS  GE   L
Sbjct: 119 RAFVEAALRTAFDPLICTQGNFNNHLGLPLTLVGGVAGTEPPRAAVLELGMSAPGENDHL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGI--------EEIASAKAE-------IFEGLEKTGTI 223
             +  P + VIT+IA  HL     +        E +A  +A        +  G E     
Sbjct: 179 AQVAGPSVHVITSIALEHLEFMGSLEAIAAAEAEPLAHLRASGGHRPLAVLPGDEPALVP 238

Query: 224 FLNYDDSFFELLK--AKSHALGIK-----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            L   DS   +L+  +   A+G            G    A  +LR  +   E   + + L
Sbjct: 239 HLPGPDSGLRVLRFGSPDAAIGAPLDVAIVAVEVGARTRAVLRLR-GEDGQEDRALSLSL 297

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A+N    + + + L  D+D   +AL    P   RG+     L  
Sbjct: 298 R---------TFGAHNARNAAAAVAVAAHLGLDLDAVARALEAVEPVGDRGRLLELELGG 348

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LI + YNANP SM AA+  L+ +    +G R+AVLGDM E+G    + H ++    
Sbjct: 349 HTHALIADCYNANPGSMSAALGSLAML----DGPRVAVLGDMLELGPDEDALHREVGTEA 404

Query: 397 SLYNISHV 404
           +   I  V
Sbjct: 405 ARLGIDAV 412


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 204/445 (45%), Gaps = 21/445 (4%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV  ++ A + S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG-ELPADMKSFQDA 82

Query: 85  VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  + + L  L KLA   R + +  +I ITGS GKT  KE L   LS  +       SY
Sbjct: 83  NFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH  NF  +
Sbjct: 143 NSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++    K  +F+  +    I  + D+       AKS     +  +S   ++   F +   
Sbjct: 203 QDKCMEKLTLFKDCD---VIIYDGDNELISSCVAKSLFTSREIAWSKKDNERPLF-IESI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    + ++ +  G   E     I     +N L  L +   +    +   + ++     
Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVSPEQITERMARL--- 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R      +    LI++SYN++ AS+  A+  +S+ S     +R  +L DM E G+
Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
             +  +  +AE++    +  +   G  +   + A  R  I  ++  T + L   ++S L+
Sbjct: 376 SGKLLYRQVAELVHSRGVEKIIGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
            G   +V++VK S +  F R+ + L
Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 192/459 (41%), Gaps = 33/459 (7%)

Query: 24  QGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +G V+ +  DSRS+  P+E  FFA++    DGH++I     +G    VV           
Sbjct: 44  EGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYARGVRFFVVEELPCEWEKLY 103

Query: 82  SIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           S   F  V     AL +LA   R      I+ +TGS GKT  KE L   LS  K+     
Sbjct: 104 SQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTVVKEWLYQLLSFSKRVTRSP 163

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            SYN+ IGVPL++  +      GIFE G+S  GE+  L ++++P I V+T++  AH  NF
Sbjct: 164 RSYNSQIGVPLSVWLLNEQTQVGIFEAGISKKGEMEVLRNIIKPTIGVLTSLGDAHQENF 223

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKT--------IY 248
             +EE    K  +F  ++    +   YDD    S  + L  K   LG           I 
Sbjct: 224 VSMEEKCREKLRLFTDVD---VLVYPYDDKLIRSCVDTLSFKGKGLGWSVKDASVSLFIK 280

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
              KS+ +      WKQ  E S+    +   S+             + +  L +   L  
Sbjct: 281 DIKKSELSTTIAYIWKQEKEDSYTIPFIDDASI------------YDSITCLALCLYLGV 328

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +     + +  P      R      Q   TLI++SYN++  S+  A+  +++   H  
Sbjct: 329 KKEVLKARMPLLEPV---AMRLEVKEGQRGCTLINDSYNSDINSLDIALDFMNRRPDHKG 385

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            +R  VL D+ +  E  ++ +  +A +     +      G  ++  + A        +  
Sbjct: 386 RKRTLVLSDILQSAEDDEALYRRVASLAEKRGVEKFIGIGETLICQRKAFNNIKEKCFFT 445

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           T+ G         +  +V+++K +   GF +L  +L+ +
Sbjct: 446 TVGGFLSSDAFRQMHDEVILLKGARCFGFEQLTEMLVNK 484


>gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 516

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 198/486 (40%), Gaps = 55/486 (11%)

Query: 20  GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVV------- 70
           G  P   V G +  DSR +     F A+ G   DGHD+   AV  GA G ++        
Sbjct: 20  GTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAAKAVADGAVGCLLSRPVMDGM 79

Query: 71  ----------------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
                             D  A+   +   V  V   LG + +  +    +    ++ +T
Sbjct: 80  RPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGLIARHVIDILTQKGLVVVGVT 139

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKT+TK+M+    S+   T A  GS+NN IG P T  +   +  F I E+    +G 
Sbjct: 140 GSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTALKCTAETQFLISEMSARGIGH 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  +  P I V   +  AH+  F     IA AK E+ E L + G   LN DD     
Sbjct: 200 IAHLAAIAPPKIGVELNVGTAHVGEFGSQTAIAQAKGELVEALPENGEAVLNADDPLVAQ 259

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           + +++ A    T YS   +  A +        +  +   + ++ +++ ++     G H  
Sbjct: 260 MASRTRAR--VTSYSAVSTAAAVYATDITFDHNACARFRLHIEDENVHQITLLVAGEHQV 317

Query: 294 QNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            N L           D +T   +L+        R     C  N    T+ID++YNAN  S
Sbjct: 318 SNALAAAAAAHAAGIDSETIAHSLNRHVGASAHRMSLVSCPRN---ITVIDDAYNANNES 374

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+A +S L   +        AVLG M E+G  SQ+ H  +     L NI      G H L
Sbjct: 375 MRAGLSALVHTARSRGSSAWAVLGPMGELGRESQTVHAAIG--AELKNI------GVHGL 426

Query: 413 AL--KDALPRSIHVHYSETMDGLFLFIQSSLVDG-----------DVVVVKSSNSCGFYR 459
               +++  R++     +T  G+   +  + ++            DVV+VK+SN+   + 
Sbjct: 427 IAVGENSDSRALATAAEKT--GITTLVARTNLEAAHKLAPLLHADDVVLVKASNAFALWE 484

Query: 460 LINLLL 465
           + + L+
Sbjct: 485 VADELV 490


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 205/479 (42%), Gaps = 34/479 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G   +  ++ +  DSRS++ P+E  FFA+      G  +I     
Sbjct: 3   YTIESIAECIGARRVGEC-EATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYD 61

Query: 63  KGA-GLVVVNTDMV----ASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGS 116
           +G    VV   D        +G LS   F  V + L AL KLA   R   K  II ITGS
Sbjct: 62  RGVRNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIGITGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT  KE L   LS  ++      SYN+ IGVPL++ ++  + + GIFE G+S +GE+ 
Sbjct: 122 NGKTIVKEWLHQLLSPDRRIVRSPRSYNSQIGVPLSVWQLNEEAELGIFEAGISEMGEMN 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  +++P I ++T I  AH  NF  ++E    K  +F+  +    +  N D+       
Sbjct: 182 ALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCV 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           AKS  L  + I    K       + +  +  + + +  +            I     +N+
Sbjct: 239 AKS-MLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIPFIDDASIENV 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNAN 349
           L  L     L    D   + ++   P       KEG+     C        LI++SYN++
Sbjct: 298 LNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSD 347

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G 
Sbjct: 348 LASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVRSRGIDKLIGVGA 407

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + +       ++  ++    + L        +  +V+++K S    F    +LL EE 
Sbjct: 408 EISSCTARFDDALERYFFPNTEALLASNLLKSLHSEVILIKGSRVFNF----DLLSEEL 462


>gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate
           [Corynebacterium glutamicum]
          Length = 293

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 32/255 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSRS+ P   F A+ G   DGHDF   A++KGA  V+   ++   + ++ +P   + 
Sbjct: 31  VEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREV--DVPAIVVPPVKIQ 88

Query: 90  D----------------VLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEML 126
           +                V+ AL++LA       VA     +  ++AITGS GKT+TK+ +
Sbjct: 89  ESNADIYAHEPDGHGAAVVEALSRLARHVVDICVAGH---QLNVVAITGSAGKTSTKDFI 145

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L     T A  GS+NN +G+P T+ R   D  + + E+    +G I+ LT +  P I
Sbjct: 146 ATVLGQDGPTVAPPGSFNNELGLPHTV-RCTTDTKYLVAEMSARGIGHIKHLTEIRPPRI 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTI-FLNYDDSFFELLKAKSHALG 243
           A +  +  AHL  F   E IA AK EI E L  +KTG +  LN DD F   +  ++ A  
Sbjct: 205 AAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARV 264

Query: 244 IKTIYSFGKSKNADF 258
           +      G++K +D+
Sbjct: 265 VWFTTDAGQAKKSDY 279


>gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 523

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 18/316 (5%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAA----RLRSKATI 110
           +LH     A L++V   +  S   + +P   + + L     N  A  A    R  +  +I
Sbjct: 123 LLHYFLSAAALILVTPFLFLSAWLMVLPAAWISEPLEMAIRNHYAADAAKLLRSNNALSI 182

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELG 168
           + ITGS GKT+ K +L   LS +  T    GSYNN +G+ LT+ R  ++    +F  E+G
Sbjct: 183 VGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMGITLTI-RNKLERLHEVFLCEMG 241

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H+ EI  L   V+P   V+T++   HL+ F  +E I   K ++ E L   G  F+N D
Sbjct: 242 ADHVKEIHDLMQFVKPQYGVVTSVGAQHLATFGSMENILHEKMQMIECLPADGIGFVNRD 301

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +++      ++       I  FG S++AD++    +   E +   V  +G+S       +
Sbjct: 302 NAYIRTYSIQNTC----RIVWFGMSEDADYRCCDIRYSEEGTSFTVIQEGQSHRFHTKLL 357

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N  +T  I    T  V   I AL+V   ++     +R  + + F TL+D++YN+
Sbjct: 358 GKHNVVN--ITCAIAVAHTLGVSWEIMALAV---EKLPYVEHRLQVRKSFCTLLDDAYNS 412

Query: 349 NPASMKAAISVLSQIS 364
           NP   + A+ VL Q+ 
Sbjct: 413 NPEGARCALEVLKQMK 428


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 200/444 (45%), Gaps = 21/444 (4%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSRS+  P+E  FFA+K    DGH++I     +G    VV  ++V    +   P      
Sbjct: 30  DSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVV--EVVPEDWATRYPDSNFLK 87

Query: 91  VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+G   AL +LA   R      I+ ITGS GKT  KE L   LS          SYN+ I
Sbjct: 88  VVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +  +   G+FE G+S  GE+  L  +++P I V TT+  AH  NF  +E   
Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKC 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K ++F   E    I  + D+       ++    G K  +S  K+  A F ++  ++  
Sbjct: 208 HEKIKLFHDTE---AIVYSADNEVMAQCLSQYDYKGQKLDWSV-KNTEAAFYIKAIEKKD 263

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGR 326
            ++ +    +G++            +    +T  +VS+ L     T  + ++   P    
Sbjct: 264 IETTVSYVWKGQTEGQYKLPFIDDASVKNSITCAVVSLHLGLTPATISERMAQLEPV--- 320

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R      Q   TLI++SYN++  S+  A+  +++   H   RR  +L D+ + G+  +
Sbjct: 321 AMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDK 380

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VD 443
             +  +A +     +      G  +LA + A       H+  T++    FI S +   + 
Sbjct: 381 DLYNKVAFLCEKRGVEKFIGIGEGLLAQRSAFKHLGEKHFFATVNS---FIHSDVFANLH 437

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
            +V+++K +   GF RL  LL+++
Sbjct: 438 DEVILLKGARQFGFDRLTELLVKK 461


>gi|116070403|ref|ZP_01467672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
 gi|116065808|gb|EAU71565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
          Length = 310

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 154/329 (46%), Gaps = 30/329 (9%)

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLT+          + E+GM   GEI  L+    P +AVIT I  AH+     
Sbjct: 2   HNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAVITNIGTAHIGRLGS 61

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA+AK EI   L+  G + +   D+  E   +K        ++S G+      ++R 
Sbjct: 62  REAIAAAKCEITAALKPDGVVVIPAGDALLESALSK--------VWS-GRV----VRVRL 108

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                  +     +    +EV  H +     G H A+N+L+ L +   L  D   ++ A+
Sbjct: 109 ADDTPVAADCIGVIDAGHLEVGAHRLPLPLEGRHNARNVLLALAVADQLGVD-SASLNAM 167

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            V  P  GR +R    L QG  TL+DE+YNA+P ++ AA+++LS       GRR AVLG 
Sbjct: 168 EVSVPG-GRNRR----LVQGRLTLLDETYNASPEAVMAALALLSS----QPGRRFAVLGT 218

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFL 435
           M E+G  S   H D+A   +   +  + +   G    A+ +A     H+    + +    
Sbjct: 219 MLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGLPHLAVVSSPEDAAK 278

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  L  GDVV++K+S      RL+ LL
Sbjct: 279 PLKEWLRAGDVVLLKASRGVALERLLPLL 307


>gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
 gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
          Length = 519

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 204/497 (41%), Gaps = 81/497 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD---------FILHAVQKGAGLVVVNTDMVASIGS 80
           +  DSR +AP   F A+ G   DGHD          +     +  G+  +    V + G 
Sbjct: 31  VEFDSRKVAPGGLFLALPGARVDGHDHAEAAVAAGAVAVLAARPVGVPAIVVPSVPNDGP 90

Query: 81  LSIPVFGVDD------VLGALNKLA--VAARLRSKAT-------IIAITGSVGKTTTKEM 125
            ++ +   D       VL AL  LA  V   L +  T       ++ +TGS GKT+TK++
Sbjct: 91  SAVMLLEHDTDGSGAAVLHALGLLARAVVDELATDGTPADGGLTLVGVTGSAGKTSTKDL 150

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    +  A  GS+NN +G+P T+ R      F + E+    +G +  LT +  P 
Sbjct: 151 IAALLRECGEVVAPPGSFNNELGLPWTVLRADEKTRFLVLEMSARGVGHVGELTKIAPPK 210

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHAL 242
           I V+  +  AHL  F   E IA AK E+ E L      G   LN DD     + +++ A 
Sbjct: 211 IGVVLNVGTAHLGEFGSREAIAVAKGELVEALPSAADGGVAVLNADDRMVAAMASRTKA- 269

Query: 243 GIKTIYSFGKSKNADF---------QLRK--WKQCSEQS-WMEVQLQGKSMEVVHHGIGY 290
               I   G+S++ D          Q R      CS+ S  + + + G+     HH    
Sbjct: 270 ---RIVFVGQSEDCDVRATDVVVDDQARASFTLNCSQGSARIRLAVHGE-----HHVSNA 321

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A  + +  G+     A V    KA S         +R          T++++SYNANP
Sbjct: 322 LAAAAVALENGLAVADIARVLEGTKAASA--------RRMEVTERADGVTVVNDSYNANP 373

Query: 351 ASMKAAISVLSQISPHGE--GRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            SM+AA+  L  ++      GRR  AVLG+M E+G  S   H  +  +    ++S + + 
Sbjct: 374 DSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEHDAIGRLAVRLDVSKLIVV 433

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------------GDVVVVKSSN 453
           G            S  +H    M+G +      + D              GD+V+VK+S 
Sbjct: 434 GTGRT--------SRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEPGDLVLVKASK 485

Query: 454 SCGFYRLINLLLEEFPA 470
           S   + +   +L   P+
Sbjct: 486 SVELWTVAEAILAATPS 502


>gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei BCC215]
          Length = 300

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS +P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 7894]
 gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 289

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 122/268 (45%), Gaps = 10/268 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++  + +  +       I  F     A          
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            + S + +   G  ++V  + +G H A+
Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNAR 289


>gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
 gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
          Length = 428

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 199/437 (45%), Gaps = 40/437 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR   P   F A+ G    G +++  A  KGA LV+ +    A++        
Sbjct: 29  VRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKGAHLVLSDRPGPATVE------- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +L  A R      ++A+ GS GKTTTKE L   L       A  G+ N  
Sbjct: 82  -VVDTHQALLRLGRALRELFPGQVVAVGGSSGKTTTKEALAQGLG----FPAPPGNQNTA 136

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L R+       + ELG+  +GE+  L  L RPH+AV+T +   HL  F  +E +
Sbjct: 137 PPLARFLLRLDPQAPGCVVELGVDRVGEMAELMGLARPHLAVLTALGEEHLEAFGSLEGV 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              +A    GL       ++   +  E+L+      G+ T Y FG++      LR     
Sbjct: 197 VEEEA----GLLSAPQALVSLQAA--EVLERFGLGRGLPT-YGFGEATFRGENLRLLLHE 249

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S   +  +++      + + G+G   A   L  LG+  +L  +     + L+      GR
Sbjct: 250 SRFRYGALEVH-----IPYPGMG--PALAALAALGVAEMLGLNPKEVAERLAHLVLPPGR 302

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R      +     ++++YNANP S+KA ++ L+ + P   GR+  VLG+M E+GE + 
Sbjct: 303 MERR----EKDGVVFLNDAYNANPLSVKAGLAWLA-LQP---GRKWVVLGEMRELGEEAL 354

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H+++A+  +   +  ++L  +   A   A   S+    +E ++    +++  +  GD+
Sbjct: 355 RLHLEVAQEAARLGLKPLYLGPY---AKAQA---SLGGEAAEGLEEAVGWLKERVQPGDL 408

Query: 447 VVVKSSNSCGFYRLINL 463
           V +K+S S G  R++ L
Sbjct: 409 VYLKASRSVGLERILEL 425


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 118/488 (24%), Positives = 207/488 (42%), Gaps = 47/488 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           ++   + ++I    +G  P   ++ +  DSRS+  P+E  FFA+     DG  +I     
Sbjct: 3   YSIESITESIGARRMGNAP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYITDLYA 61

Query: 63  KGA---------------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G                G + ++  M        +    V + L AL KLA   R + +
Sbjct: 62  RGVRNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHRNQFQ 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  IFE 
Sbjct: 122 IPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAIFEA 181

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 182 GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VVIYNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           DD F     AKS     +  +S    +   +  ++ K   C+  S+  + +         
Sbjct: 239 DDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKRDDCTVISYRYLDMDNT---FTL 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGF 338
             I     +N L  L     L    +   + ++   P       KEG+     C      
Sbjct: 296 PFIDDASIENSLNCLAACLYLMLPAEQITERMARLEPIAMRLEVKEGKNN---C------ 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             LI++SYN++  S+  A+  L + S     RR  VL D+ E G+ + + +  +A++++ 
Sbjct: 347 -LLINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLVLSDILETGQNTPTLYRQVAQLVNS 405

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCG 456
             I  +   G  + +   A   +I   +      L   IQ     ++ +++++K +   G
Sbjct: 406 RGIERIIGVGNEISSC--AARFNIEKTFYPDTAALIRAIQRGELRLENEIILIKGARKFG 463

Query: 457 FYRLINLL 464
           F  L  +L
Sbjct: 464 FDSLTEVL 471


>gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 297

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
          Length = 298

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 91]
          Length = 289

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 14]
          Length = 272

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 198/454 (43%), Gaps = 41/454 (9%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSRS+  P+E  FFA+K    DGH++I     +G    VV T  V    +   P      
Sbjct: 30  DSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVET--VPEDWNRRYPDSNFLK 87

Query: 91  VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+G   AL +LA   R      I+ ITGS GKT  KE L   LS          SYN+ I
Sbjct: 88  VVGSLEALQRLAERHRDEYLVPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +  +   G+FE G+S  GE+  L  +++P I V T +  AH  NF  ++   
Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMSALHDIIQPTIGVFTCLGSAHQENFPSLDAKC 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQC 266
             K  +F     T  I  + DD        +    G K  +S  K + A F ++   K+ 
Sbjct: 208 REKLHLF---HDTQAIVYSLDDEVLNRCLDEYDYKGEKLCWS-AKDEKAVFYIKSIEKKD 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E +       GK             AQ  L  +   S++ + +  A+ AL +       
Sbjct: 264 VETTVTYTWKNGKE------------AQYRLPFIDDASVVNS-ITCAVTALQLGVTPAAL 310

Query: 327 GKR--------YRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           G+R         R  + +G    TLI++SYN++  S+  A+  +++   H   RR  +L 
Sbjct: 311 GERMALLEPVAMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRRRTLILS 370

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           D+ + G+  +  +  +A +     +      G  +L  + A       H+  T++    F
Sbjct: 371 DILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSAFRHLGKKHFFATVNA---F 427

Query: 437 IQSSL---VDGDVVVVKSSNSCGFYRLINLLLEE 467
           I S +   +  +V+++K +   GF RL  LL+++
Sbjct: 428 IHSDVFANLHDEVILLKGARQFGFDRLTELLVKK 461


>gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 303

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++    +A +   G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Deinococcus deserti VCD115]
 gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Deinococcus
           deserti VCD115]
          Length = 433

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 194/438 (44%), Gaps = 64/438 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR  +P  AF A+ G    G+ F+  A+  GA  V+ + D+  +   L +P     
Sbjct: 24  LTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDVPRA---LRVPSQEES 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +   AL   A   R R+ + ++ ITGS GKTT K   + A ++++  Y  +  YN    +
Sbjct: 81  NARDALFAWARQERARN-SLVVGITGSAGKTTAK---SYAAAALEAHYMPV--YNTMPAI 134

Query: 150 PLTLARMPVDVDFG------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
              L      +++G      + E+G+  +GE+  L  LVRP + V+T+I PAHL     I
Sbjct: 135 ACFL------IEYGASDRPLVVEMGIDRIGEMAELVDLVRPDVGVVTSIGPAHLEQLGSI 188

Query: 204 EEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           E IA  K  I +G     G     Y           S   G+++ Y FG   +A   L+ 
Sbjct: 189 EGIAREKGVILQGRRALVGAQAAPY----------YSQNPGVES-YGFGNVTHAGQDLQV 237

Query: 263 WKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             + +  S+  V +       ++     +G  +AQ   + L   +   A V         
Sbjct: 238 TPEGAGFSYGGVDVALPLAAPVQAEAAVLGMVLAQQAGIPLEAAASRLAQVSLP------ 291

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                  G RYR  ++ G +T+ID++YNA+P +++AA+  L  +     GRRI+VLG M 
Sbjct: 292 -------GGRYR--VHPGRYTVIDDAYNASPLAVQAALDALGALP----GRRISVLGRML 338

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G   +  H   A+V S          G    A +      +      T+  L   + +
Sbjct: 339 ELGPTERELH---AQVGSYARERADLTYGVGPFAAE------LGDRAFATVPELLGALTA 389

Query: 440 SLVDGDVVVVKSSNSCGF 457
            + DGDVV++K+S    +
Sbjct: 390 EVRDGDVVLIKASRGISW 407


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 202/452 (44%), Gaps = 35/452 (7%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I  DSRS+  P+E  FFA+K    DGH ++    ++G    VV        G L + 
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVV--------GELPVD 75

Query: 85  VFGVDDV--------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +    D         L  L KLA   R + +  +I ITGS GKT  KE L   LS  +  
Sbjct: 76  LQSFQDANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVV 135

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++P + ++T I  AH
Sbjct: 136 TRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             NF  +++    K  +F+  +    I  + D+       AKS     +  +S   ++  
Sbjct: 196 QENFFSLQDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERP 252

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            F +   ++    + ++ +  G   E     I     +N L  L +   +    +   + 
Sbjct: 253 LF-IESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITER 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ++     E    R      +    LI++SYN++ AS+  A+  +S+ S     +R  +L 
Sbjct: 312 MARL---EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILS 368

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL 435
           DM E G+ S+  +  +AE++    +  +   G  +   + A  R  I  ++  T + L  
Sbjct: 369 DMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL-- 423

Query: 436 FIQSSLVDG---DVVVVKSSNSCGFYRLINLL 464
            ++S L+ G   +V++VK S +  F R+ + L
Sbjct: 424 -LESDLLAGLRNEVILVKGSRAFHFDRISDRL 454


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 211/478 (44%), Gaps = 34/478 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           ++  ++++ I    IG V    ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YSIENIVEIIGAQRIGNV-SATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYA 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFG-----------VDDVLGALNKLAVAARLRSKATII 111
           +G    VV+ +   S+    +  F            V + L AL KLA   R + +  +I
Sbjct: 62  RGVRNFVVSKE---SMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVI 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKT  KE L   LS+ +       SYN+ IGVPL++ +M       IFE G+S 
Sbjct: 119 GITGSNGKTIVKEWLHQLLSAERVIVRSPRSYNSQIGVPLSVWQMNEQSGLAIFEAGISE 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F
Sbjct: 179 PGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEF 235

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGI 288
                AKS     +  +S    +   +  ++ K   C+  S+  + +    ++  +    
Sbjct: 236 ISNCVAKSMLSAREIAWSRKDMERPLYIGKVEKKDDCTVISYRYLDMDNTFTLPFIDDA- 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N L  L     L    +   + +    P      R      +    LI++SYN+
Sbjct: 295 ---SVENSLNCLAACLYLMLPAEKITERMGRLEPV---AMRLEVKEGKNGCVLINDSYNS 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  S+  A++ L + S     +R  +L D+ E G+ + + +  +A++++   I  +   G
Sbjct: 349 DLGSLDIALNFLYRRSLSNGLKRTLILSDILETGQNTSTLYRQVAQLVNSRKIERIIGVG 408

Query: 409 FHVLALKDALPRSIHVHYSETMDGLF-LFIQSSL-VDGDVVVVKSSNSCGFYRLINLL 464
             +     A   +I   +    D L    ++  L ++ +++++K +   GF  L  +L
Sbjct: 409 SEISTC--AARFNIENAFYPNTDALMNAVVKGKLRLENEIILIKGARKFGFDALTEVL 464


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 209/452 (46%), Gaps = 28/452 (6%)

Query: 26  FVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           FV+ ISIDSRS+   PQ  F A+ G + D H +I   ++KG     V        G  + 
Sbjct: 24  FVDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEKGVQNFAVQYIPENVKGKANF 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             F V + L AL +LA   R      II +TGS GKT  KE L   LS          SY
Sbjct: 84  --FVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVKEWLNFLLSPDYNIIRSPKSY 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +GVPL++  +    + GIFE G+S + E+  L  +++P+I V+T I  AH   F  +
Sbjct: 142 NSQVGVPLSVIAINEKHNLGIFEAGISTVNEMVNLEKIIKPNIGVLTNIGSAHDEGFENL 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFG-KSKNADFQL 260
            +  + K  +F   +K+  I    ++   + L   +  + L  + ++S+     +AD  +
Sbjct: 202 TQKINEKLLLF---KKSAVIIYQKNELVDKCLLDFSAQYPLENRALFSWSFADASADVFI 258

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA---QNMLMTLGIVSILTADVDTAIKAL 317
            K +  ++ + ++ Q +    E+ +  I +  +   +N +  L ++     D       +
Sbjct: 259 LKKETKNDSTTIKYQYKD---EIFNLEIPFSDSASIENAISCLLVLLHFEYDFTIIQNRM 315

Query: 318 SVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            + +P E      R  +  G    +LID+SY+++  S+K A+  L   S      +  +L
Sbjct: 316 EMLYPVE-----MRLEVKNGIHNCSLIDDSYSSDFQSLKIALDFLE--SQKKNASKAVIL 368

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            D+ + G  ++  +  +A+++S   I+ V   G  + + +D  P S      +       
Sbjct: 369 SDIFQSGFSNEELYSKVAQLISDNKINRVIGIGTTISSFQDKFPNSTMF---QNTAAFIA 425

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            I++   + + +++K + S  F  +++LL E+
Sbjct: 426 EIENLNFNNETILIKGARSFQFEEIVSLLEEK 457


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 203/458 (44%), Gaps = 49/458 (10%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSRS+  P+E  FFA+K    DG ++I     +G    VV  ++V    +   P      
Sbjct: 30  DSRSLCFPEETLFFALKTERNDGQNYIPELYARGVRNFVV--EVVPEDWATRYPDSNFLK 87

Query: 91  VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+G   AL +LA   R      I+ ITGS GKT  KE L   LS          SYN+ I
Sbjct: 88  VVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +  +   G+FE G+S  GE+  L  +++P I V TT+  AH  NF  +E   
Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKC 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----- 262
             K ++F   E    I  + D+       ++    G K  +S  K+  A F ++      
Sbjct: 208 HEKIKLFHDTE---AIVYSADNEVMAQCLSQYDYKGQKLDWSV-KNTEAAFYIKAIEKKD 263

Query: 263 --------WKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                   WK  +E  +    +   S+E  +    +  H+     +T   +S   A ++ 
Sbjct: 264 IETTVSYVWKGQTEGQYKLPFIDDASVENSITCAVVSLHLG----LTPATISERMAQLEP 319

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L V   KEG   ++ C       TLI++SYN++  S+  A+  +++   H   RR 
Sbjct: 320 VAMRLEV---KEG---QHGC-------TLINDSYNSDFNSLDIALDFMNRRPDHKGRRRT 366

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +L D+ + G+  +  +  +A +     +      G  +LA + A       H+  T++ 
Sbjct: 367 LILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQRSAFKHLGEKHFFATVNS 426

Query: 433 LFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLEE 467
              FI S +   +  +V+++K +   GF RL  LL+++
Sbjct: 427 ---FIHSDVFANLHDEVILLKGARQFGFDRLTELLVKK 461


>gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 460

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 174/389 (44%), Gaps = 29/389 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D   AL KL    R +S+A  I +TGS GKTTTKEM    LS+  K    + + N
Sbjct: 85  VIEVSDPKQALWKLVHWQRAQSRAIFIGVTGSAGKTTTKEMAASILSTKYKVLKSVANNN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203
            +  +P  L  +       + E+GM+  G IR    + +P + ++T +  AH+      +
Sbjct: 145 LYSLMPGNLILLHPKHQVVVLEMGMAGFGNIRKQCLVAKPSLGIVTNVGEAHVGKLGHSL 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             +A AK E+ +GL   GT+ LN DD   + L  +        + + G  K A  +  + 
Sbjct: 205 ANVARAKQELIDGLAPKGTLILNADDPGSKRLNTRRFR---GQVITLGIEKPATIRATRV 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K         +   GK   V +H    G H   N L  + +   L        K L  F 
Sbjct: 262 KYTKNGMSFYI---GK---VPYHIPVWGRHNIYNALAAIAVAKQLNVPTPWIQKGLQNFP 315

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +R +   N   + LI++ YNANP++M A + VL +++  G+ + +AVLGDM  +
Sbjct: 316 APRMRLQRIKGIKN---WLLINDCYNANPSAMVAGLKVLMRVA--GKKQSVAVLGDMHSL 370

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--------RSIHVHYSETMDGL 433
           G+LS   H  + + ++  N S +   G   + +             RS+  +  ET+   
Sbjct: 371 GKLSLQSHRQVGKFVARLNPSTLITVGPQAVQIAKGASAAGYKGKIRSLP-NQPETVAN- 428

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             +++ ++ +G V+  K+S      + +N
Sbjct: 429 --YLRKNIPEGSVLYFKASRKTALEKTVN 455


>gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
 gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
          Length = 472

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 178/425 (41%), Gaps = 77/425 (18%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +IDSR +   + F AIK    DGH F+  A   GA   +V+T   A    L++P   V D
Sbjct: 29  AIDSRQLRRGDVFVAIKSEQRDGHAFLGAAEAAGASAALVSTPDPA----LALPQLVVAD 84

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--------KTYACIGS 142
            L A   +A   R   +  ++ I+GS GKT+TK +L + L +          +  A  G+
Sbjct: 85  PLRAFQAIAREHRRLFRGPVVGISGSAGKTSTKNLLALLLETAAASSDAHAGQVLATEGN 144

Query: 143 YNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            NNH+GVPLTL  + P    F + E G+S  GE+  L  +++P +A+IT +A AH     
Sbjct: 145 LNNHLGVPLTLTLLDPAVHRFAVVEAGISAPGEMAPLAEMIQPDVALITLVAAAHTEELG 204

Query: 202 GIEEIASAKAEIFEGLEKTG-TIFLNY------------------------------DDS 230
           G+  +A  KA +   +  TG  IF  +                              D  
Sbjct: 205 GLAGVAKEKAVLPAAVPPTGIAIFPKHCTEFAAFRELDVQQMVVERADVIRPAQPPRDKV 264

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           FF +     H +      ++G      F LR+                         +  
Sbjct: 265 FFTVSHRDEHTV---VALAYGPPPPLTFTLRR-------------------------VSD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            MAQN  + +     L    ++  + L+ + P + RG+  R     G +  +D  YNANP
Sbjct: 297 GMAQNAALAICAALWLGVPAESIQQRLAQWQPAKLRGELRR---ENGRWLYLD-CYNANP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           ASM  A+     ++P  E  R+ VLG M E+G  +  +H +L   L L       + G H
Sbjct: 353 ASMTDALEAFYGMAPTAEP-RLFVLGGMEELGREAAGYHHELGRALRLRAGDQAVVIGEH 411

Query: 411 VLALK 415
             A++
Sbjct: 412 APAVR 416


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 179/426 (42%), Gaps = 18/426 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAV 61
           ++T   + + I  H   I  + F+     DSRS+  PQ   FFAI+    DGH +I    
Sbjct: 1   MYTLQTIAEKIHAHQCAIRSEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             G    VV  +            F  V DV+ +L K+A   R      ++ +TGS GKT
Sbjct: 61  NHGVRSFVVKDEFDKLTQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L+   +      SYN+ +GVPL++ +M  +    IFE G+S LGE+  +  
Sbjct: 121 IVKEFLYQLLADTYRVVRSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLGEMARIEE 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
           +++P I VIT I  AH  NFS I +    K  +F G ++   I  N D+    +  + L 
Sbjct: 181 VIKPTIGVITNIGSAHQENFSSIAQKVDEKLLLFGGCDR---IVYNMDEPEIVAGLQRLG 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S A G        K   A   +R  +   + + +   + G    +          +N+
Sbjct: 238 LLSRARGWSR-----KDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENV 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +    I+   +    +  S   P E R +      N     +I++ YN +  S+K A
Sbjct: 293 LTCVLTTIIINPSLIDHPELFSKLEPVEMRLELIEGNKNN---LIINDVYNNDINSLKIA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    Q +   +   + +L ++ +     +  +  + E++  Y IS  +  G  + A ++
Sbjct: 350 LDFQQQRATDADLEPVLILTEIQQSALNERPLYSRVGELIGKYRISKFYGIGKELFAYRE 409

Query: 417 ALPRSI 422
             P  I
Sbjct: 410 FFPTEI 415


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 194/445 (43%), Gaps = 23/445 (5%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSRS+  P+E  FFA+K    DGH++I     +G    VV T  V    +   P      
Sbjct: 30  DSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVET--VPEDWNKRYPDSNFLK 87

Query: 91  VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+G   AL +LA   R      ++ ITGS GKT  KE L   LS          SYN+ I
Sbjct: 88  VVGSLEALQRLAERHRDEYLIPVVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +  +   G+FE G+S  GE+  L  +++P I V T +  AH  NF  +E   
Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMSALRDIIQPTIGVFTCLGSAHQENFPSLEAKC 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQC 266
             K  +F     T  I  + DD        +    G K  +S  K + A F ++   K+ 
Sbjct: 208 KEKLHLF---HDTQAIVYSLDDEVLNRCLDEYDYKGEKLCWS-AKDEKAVFYIKSIEKKD 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEG 325
            E +       GK  +     I     +N + T  + ++       A+ + ++   P   
Sbjct: 264 VETTVTYTWKNGKEAQYRLPFIDDASVENSI-TCAVTALQLGVTPAALGERMAQLEPV-- 320

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R      Q   TLI++SYN++  S+  A+  +++   H   RR  +L D+ + G+  
Sbjct: 321 -AMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTD 379

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---V 442
           +  +  +A +     +      G  +L  + A       H+  T++    FI S +   +
Sbjct: 380 KDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSAFRHLGKKHFFATVNA---FIHSDVFANL 436

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
             +V+++K +   GF RL  LL+++
Sbjct: 437 HDEVILLKGARQFGFDRLTELLVKK 461


>gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 496

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 197/475 (41%), Gaps = 68/475 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDF-----------ILHAVQKGAGLVVV-------- 70
           +  DSR +A  + F A+ G   DGHD+           +L A   G   V+V        
Sbjct: 30  VEFDSRKVASGDLFVALSGVKVDGHDYAAAAMDRGAAGVLAARPVGVPAVIVPPATEVDH 89

Query: 71  -------NTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKA-TIIAITGSVGKT 120
                  +TD     GS++        VL  + KLA  V  +L ++  T+I ITGS GKT
Sbjct: 90  HSYATEHDTD-----GSVAA-------VLEGMAKLARYVVDKLSARGLTVIGITGSAGKT 137

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+++   L     T A  GS+NN IG P T  R      + + E+    +G I  L  
Sbjct: 138 STKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTEATKYLVSEMSARSIGNIAHLAA 197

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  PHI V+  +  AH+  F   + IA  K E+ E L   G   LN DD +   +  ++ 
Sbjct: 198 IAPPHIGVVLNVGTAHMGEFGSRDNIARTKGELVEALPADGIAVLNADDDYVAAMADRTS 257

Query: 241 ALGIKTIYSFG------KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMA 293
           A    T++SF       +    D +L    + +      + Q    + +V     G H  
Sbjct: 258 A----TVWSFSTLHKPVRVAATDIRLDNLSRPTFTLIGTDSQKVTHTAQVTLQIFGEHQV 313

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L           D  T  + L     +         A N     +ID++YNANP SM
Sbjct: 314 ANALAAATAALAAGVDFATVAQGLRAHTVRSAHRMDVHHAGND--VIVIDDAYNANPESM 371

Query: 354 -KAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                ++    + +G G R IAVLG M E+G+ + + H++L   ++   I  V + G   
Sbjct: 372 RAGLRALALAAAKNGPGARSIAVLGPMAELGQDATADHVELMRTVAEQGIDLVVVVGTDE 431

Query: 412 LALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            A            R+I    +       L +   L  GDV++VK+SN+   YRL
Sbjct: 432 NARAMINAAAAMGLRAIPTADTTQAATEVLKV---LGRGDVILVKASNA---YRL 480


>gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
 gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
          Length = 543

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 148/327 (45%), Gaps = 28/327 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           LG +N      +      +I +TGS GKT+TK  L   LS    T     SYN  +G+ +
Sbjct: 179 LGFINDARRIVKSSKDLDVIGVTGSYGKTSTKHALNAILSEQFNTLMTPESYNTPMGITI 238

Query: 152 TLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+     P+   F I E+G   +GEI  L  +  P   V+T++ P HL  F  I+ +   
Sbjct: 239 TIRNFLKPIHSKF-IAEMGAYKVGEINELCEIAYPKYGVLTSVGPQHLETFKTIDNVKQT 297

Query: 210 KAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           K E+ E L + G  F+N DD     ++E     +   G   +Y++G  + AD++    + 
Sbjct: 298 KFELIEYLPEDGIGFINIDDENIRDYYE-----NKFQGKCKVYTYGIEREADYRASDIEV 352

Query: 266 CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + +   V  +   +E      +G H   N L ++G+   L   V+    A+    P  
Sbjct: 353 SEKGTTFNVHFKDGRVETFQTKLLGLHNIYNTLASIGLGYELGIPVEKMQMAVRKMKPVT 412

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  R     G FT+ID+++N+NP   K A+ VL Q++    G+RI +   M ++G  
Sbjct: 413 HRLELRR----NGNFTIIDDAFNSNPVGSKMALEVLGQMN----GKRIVITPGMVDLG-- 462

Query: 385 SQSFHIDLAEVLSLY---NISHVWLSG 408
             +   DL +    Y   N  +V L G
Sbjct: 463 --TAQYDLNKAFGTYMKDNCDYVILVG 487


>gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
 gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
          Length = 436

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 192/421 (45%), Gaps = 40/421 (9%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F A+ G    G +F   A+ KGA LV+ +    A++         V+D   AL +L  A 
Sbjct: 53  FVALPGSRAHGREFAGEALAKGASLVLSDRPGRATVE--------VEDPYKALIRLGRAL 104

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      ++A+ GS GKTT KE L   L       A  G+ N    +     ++P +   
Sbjct: 105 RDLFPGPVVAVGGSSGKTTAKEALAQGLG----FPAPEGNQNTAPPLARFFLKLPQEAPG 160

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + ELG+  +GE+  L  L RP +AV+T +   HL  F  ++ +   +     GL K   
Sbjct: 161 AVVELGVDRVGEMAELMELARPDLAVLTALGEEHLLAFGDLKGVVEEEM----GLLKAPM 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             ++      E+L A  H +   T Y FG+   A F+    +   ++S    + +G  + 
Sbjct: 217 ALVSQQAK--EVLLAFGHRVDWPT-YGFGQ---ATFRGEGLELLPQES--RFRYRGLPVR 268

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V + G+G  +     M      +L  D+    + L+      GR +R       G    +
Sbjct: 269 VPYPGLGPALGALAAMA--AAEVLGWDLLEVAERLAHLRLPPGRMERREI----GGVVFL 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +++YNANP S+KA ++ L+       GR+ AVLG+M E+ E +   H+++AE  +   ++
Sbjct: 323 NDAYNANPLSVKAGLAWLAAQP----GRKWAVLGEMRELAEKALELHLEVAEEAARLGLT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++L  F   A   A   ++     E ++    ++++ +  GD+V +K+S + G  R++ 
Sbjct: 379 PLYLGPF---AKAQA---ALGGEAVEDLEAALAWLKARVRPGDLVYLKASRAVGLERILE 432

Query: 463 L 463
           L
Sbjct: 433 L 433


>gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus ATCC 19977]
 gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus]
          Length = 491

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 209/490 (42%), Gaps = 73/490 (14%)

Query: 24  QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVVN 71
           Q  V G +  DSR ++P   F A+ G   DGHD    A +            G   +VV 
Sbjct: 24  QARVTGTVEFDSRQVSPGGLFLALPGARADGHDHARGAAEAGAVAVLAARPVGVPAIVVP 83

Query: 72  TDMVA----------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              VA          S GS +  +     +   + +   A  LR    I+ ITGS GKT+
Sbjct: 84  PTGVARTEVSALEHDSDGSGAAVLAATAALAAEVARRLTARGLR----IVGITGSSGKTS 139

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+++   LS + +  A  GS+NN +G P T+ R      F + EL     G I  L  +
Sbjct: 140 TKDLIAAVLSPLGEVVAPPGSFNNELGHPWTVLRATESTKFLVLELSARRPGNIAELAAI 199

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I V+  +  AHL  F   + IA  K E+ + L   G   LN DD+    + AK+ A
Sbjct: 200 APPSIGVVLNVGTAHLGEFGSRQAIADTKGELPQSLSGGGVAVLNADDAAVAAMAAKTPA 259

Query: 242 LGIKT-------IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             ++T       I++   S + D    ++   + Q  + VQL       VH   G H   
Sbjct: 260 RVVRTSVHHPADIWATEVSVD-DLARARFTLHAGQDSVPVQL------AVH---GEHHVS 309

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +     A +     AL+   P   R  R   +      T+I+++YNANP SM 
Sbjct: 310 NALAAAAVALECGATLAQVAAALAGAGPVSRR--RMEVSTRDDGVTVINDAYNANPDSMM 367

Query: 355 AAISVLSQISPH-GEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           A +  L  ++ H GE RR  AVLG+M E+G  + S H  +       ++S + + G    
Sbjct: 368 AGLKALVSMARHGGEPRRSWAVLGEMAELGPDAISEHDRIGRAAVRLDVSRLVVVGTG-- 425

Query: 413 ALKDALPRSIH-VHYSETMDGLFLFIQSSLVD---------------GDVVVVKSSNSCG 456
                  RS   +H    M+G +   ++ LVD               GDVV+VK+S S G
Sbjct: 426 -------RSQRAMHAGAVMEGSW-GSEAVLVDDPAAAASLLASELAAGDVVLVKASRSAG 477

Query: 457 FYRLINLLLE 466
            + + + LL+
Sbjct: 478 LWVVADELLK 487


>gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 269

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++        A  G++NN 
Sbjct: 85  DTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVKEMIASIFAAAVGEPARLATAGNFNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLTAAHRLAVIELGMNHPGETDTLAKIAAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231
           A   A +   L   G      DD++
Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229


>gi|270055566|gb|ACZ59059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus]
          Length = 680

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 167/363 (46%), Gaps = 24/363 (6%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG+D +     K  GL++  T+   S    ++P   V D + A  KLA+  R + K  ++
Sbjct: 63  DGNDLV-DRQNKEIGLII--TESYISNLKFTVPQIIVKDSVQAFKKLAIYIRNQYKNPVV 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS+GK++T+ ++T  LS         G+ N    +   + ++  + DF + E  ++ 
Sbjct: 120 AITGSMGKSSTRMLITSLLSDFD-VLENRGNNNVRAAIYNNMLKLIKNPDFAVIETSLNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +  +      ++P IA+IT I  AH S F  +++IA  K  +FEGL   G   +N D  +
Sbjct: 179 INYLENTAVYLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRVFEGLADNGVAIVNNDTLY 238

Query: 232 FELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
            + L  KA+ +   + T YS  K  NAD  +   K       + +  Q K  ++   + I
Sbjct: 239 ADYLVDKARENTNNVLT-YSIKKDSNADLTVDNIKYNKGNIGLLINDQNKETDIYQLNTI 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTL 341
              M  N L ++  +  L   +   +  L  F P       KE + K ++        TL
Sbjct: 298 SEGMVSNTLASMLTLKSLKLPIKKDL--LKNFKPFSKILALKEIQTKSHK-------LTL 348

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+++NA+  +M  AI   +  +    G +I  +G + ++G  S   H+ L + L   N 
Sbjct: 349 LDDTHNASLPAMINAIRAFNSQTRFYTGNKIIAIGKISDLGHKSSETHLQLVDELESCNA 408

Query: 402 SHV 404
            ++
Sbjct: 409 DYI 411


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 204/447 (45%), Gaps = 27/447 (6%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85
           DSRS+  P+E  FFA+K    DGH++I     +G    VV     N + + S GS  + V
Sbjct: 30  DSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVVEVVPDNWETLYS-GSNFLKV 88

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            G    L AL +LA   R      I+ ITGS GKT  KE L   LS          SYN+
Sbjct: 89  VGS---LEALQRLAERHRDEFLIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNS 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPL++  +  +   G+FE G+S  GE+  L  +++P I V T++  AH  NF  IE 
Sbjct: 146 QIGVPLSVWLLNENTQVGVFEAGISKPGEMMALRDIIQPTIGVFTSLGTAHQENFPSIEA 205

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
               K  +F     T  I  + DD       A+ +  G +  +S  K  +A F ++  ++
Sbjct: 206 KCKEKLCLF---HDTQAIVYSMDDDVLTHCLAQYNYQGEQLSWS-TKHTDATFYIKSIEK 261

Query: 266 CSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPK 323
              ++ +    + GK  +     I     +N + T  +V++       A+ + ++   P 
Sbjct: 262 KDIETTVTYTWKGGKEAQYKLPFIDDASVENSI-TCAVVALHLGVTQAALAERMAQLEPV 320

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R      Q   TLI++SYN++  S+  A+  +++   H   +R  +L D+ + GE
Sbjct: 321 ---AMRLEVKEGQHGCTLINDSYNSDYNSLDIALDFMNRRPDHKGRKRTLILSDILQSGE 377

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL-- 441
             +  +  +A +     +      G  +LA ++A       H+  T++    FI S +  
Sbjct: 378 DDKELYNKVAFLCEKRGVDKFIGIGEGLLAERNAFKHLGEKHFFATINA---FIHSEVFA 434

Query: 442 -VDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  +V+++K +   GF  L  LL+++
Sbjct: 435 NLHDEVILLKGARQFGFDHLTELLVKK 461


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 177/407 (43%), Gaps = 15/407 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T  ++ Q I    IG +    ++ +  DSRS++ P+E  FFA+     DG  +I     
Sbjct: 3   YTIENIAQIIGARRIGEL-SATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYA 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPV-----FGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +G    VV+ + +    +L  P+       V   L AL KLA   R R +  +I ITGS 
Sbjct: 62  RGVRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I E G+S  GE+R 
Sbjct: 122 GKTVVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAILEAGISEPGEMRA 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F     +
Sbjct: 182 LQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKDCD---VVIYNGDDEFISNCVS 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           KS     + I    +       + K ++    + +  +            I     +N L
Sbjct: 239 KS-IFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDASIENSL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L        + ++   P      R      +    LI++SYN++  S+  A+
Sbjct: 298 NCLAACLYLMLPAGQITERMAKLEPV---AMRLEVKEGKNGCLLINDSYNSDLGSLDIAL 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             L + S     +R  +L D+ E G+ + + +  +A++++   I  V
Sbjct: 355 DFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERV 401


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 203/450 (45%), Gaps = 35/450 (7%)

Query: 33  DSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFG 87
           DSRS+  A +  FFAIK    DG  ++    ++G    VVN   V    ++  P      
Sbjct: 30  DSRSLCFAEETLFFAIKTMSNDGSKYLSDLYKRGVRNFVVNE--VPENYAVLYPNSNFLK 87

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + L AL +LA   R      +I ITGS GKT  KE +   LS          SYN+  
Sbjct: 88  VSNTLDALQRLAERHRDEFAIPVIGITGSNGKTMVKEWIYQLLSPSLIVTRSPRSYNSQT 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +  +   G+FE G+S  GE+  L  +++P I ++TTI  AH  NF+ +EE  
Sbjct: 148 GVPLSVWLLTNNTQLGVFEAGISEPGEMDSLRDIIQPTIGILTTIGDAHQENFTSLEEKC 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           + K ++F     +  +  N D++  +    +    G +   S    K+  +  +  K  +
Sbjct: 208 NEKLKLF---TDSKLLIYNEDNTLVKRCVEQFSFEGQRFSLSRQNEKSTLYVSKVLKNNA 264

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP----- 322
           + S +    +G         I     +N +  L I   L  D +   + ++   P     
Sbjct: 265 D-SVIYYSYKGVEGSYKIPFIDEASIENSIECLAIGLYLGIDKNAIEERMASLEPVAMRL 323

Query: 323 --KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             KEG   R+ C       TLI++SYN++  S+  A+  +S+     E +RI +L D+ +
Sbjct: 324 EVKEG---RHDC-------TLINDSYNSDINSLDIALDFMSRRPDAKERQRILILSDIYQ 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            G+     + +++ ++   +++     G  + A +D   +     +    D    FI S 
Sbjct: 374 TGKPLSQLYSEVSALMKQRSVNQFIGIGPEIYAHQDCFQQQNSSFFLTVQD----FIDSG 429

Query: 441 L---VDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   +  +++++K +   GF ++ +LL+++
Sbjct: 430 LFTNLRNNIILLKGARRFGFDKITDLLVKK 459


>gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
 gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
          Length = 519

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 206/505 (40%), Gaps = 82/505 (16%)

Query: 23  PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD---------FILHAVQKGAGLVVVNT 72
           P   V G +  DSR   P   F A+ G   DGHD          +     +  G+  +  
Sbjct: 23  PSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAEAAVAAGAVAVLAARPVGVPAIVV 82

Query: 73  DMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA-------TIIAITGSV 117
             V + G  ++ +   D       VL AL  LA  V   L ++        T++ +TGS 
Sbjct: 83  PSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVVDELAAEGSASGGGLTLVGVTGSA 142

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++   L    +  A  GS+NN +G+P T+ R      F + E+    +G +  
Sbjct: 143 GKTSTKDLIAALLRERGEVVAPPGSFNNELGLPWTVLRADEKTRFLVLEMSARGVGHVGE 202

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFEL 234
           LT +  P I V+  +  AHL  F   E IA AK E+ E L      G   LN DD     
Sbjct: 203 LTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGELVEALPSAADGGVAVLNADDRMVAA 262

Query: 235 LKAKSHALGIKTIYSFGKSKNADF---------QLRK--WKQCSEQS-WMEVQLQGKSME 282
           + +++ A     I   G+S++ D          Q R      CS+ S  + + + G+   
Sbjct: 263 MASRTKA----RIVFVGQSEDCDVRATDVVVDDQARASFTLNCSQGSARIRLAVHGE--- 315

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
             HH      A  + +  G+     A V    KA S         +R          T++
Sbjct: 316 --HHVSNALAAAAVALENGLAVADIARVLEGTKAASA--------RRMEVTERADGVTVV 365

Query: 343 DESYNANPASMKAAISVLSQISPHGE--GRRI-AVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ++SYNANP SM+AA+  L  ++      GRR  AVLG+M E+G  S   H  +  +    
Sbjct: 366 NDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEHDAIGRLAVRL 425

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------------GD 445
           ++S + + G            S  +H    M+G +      + D              GD
Sbjct: 426 DVSKLIVVGTGRT--------SRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEPGD 477

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPA 470
           +V+VK+S S   + +   +L   P+
Sbjct: 478 LVLVKASKSVELWTVAEAILAATPS 502


>gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 523

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 20/279 (7%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166
           +II ITGS GKT+ K +L   LS +  T    GSYNN +G+ LT+ R  +     +F  E
Sbjct: 181 SIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMGITLTI-RTKLQHLHEVFLCE 239

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +G  H+ EI  L   V+P   V+T++ P HL+ F  ++ I   K ++ E L   G  F+N
Sbjct: 240 MGADHVREIHDLMQFVKPRYGVVTSVGPQHLATFGSMDNILHEKMQMIECLPLDGIGFVN 299

Query: 227 YDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            D+++ +   +K K H      I  FG  ++AD++    +   E +   V  + +     
Sbjct: 300 RDNAYIQSYTIKNKCH------IVWFGMHESADYRCSNIRYSEEGTSFTVTAENQEHSFH 353

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N  +T  I    T  +   I AL+V   ++     +R  + + F TL+D+
Sbjct: 354 TRLLGKHNVVN--ITCAIAVAHTLGISWEIMALAV---EKLPYVEHRLQVRKSFCTLLDD 408

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +YN+NP   + A+ V+ Q+    + +R  +     E+GE
Sbjct: 409 AYNSNPEGARCALEVIKQM----KHKRFIITPGFLELGE 443


>gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 624

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 22/237 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD-FILHAVQ 62
           ++T  D+  A  G    +V       ++ D+R +A  + F A+ G   D H+ F+   +Q
Sbjct: 80  VFTASDIASATGGT---LVRDAAAGSVTTDTRDVAGGKWFLALVGETRDAHEEFVNDELQ 136

Query: 63  KGAGLVVVNTDMVASIGSLSIP-------VFGVDDVLGALNKLAVAARLR--SKATIIAI 113
                   NT+ V  I S   P       V    D   AL +LA   R R      ++ +
Sbjct: 137 --------NTECVGVISSRPPPGSWRKGYVQTACDPTTALQRLASDVRDRFPPDVVVVGV 188

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTT+ +   AL+S+   +   G++NNH+G+PLTL + P DV   + ELGMS LG
Sbjct: 189 TGSVGKTTTRALTARALASLGVVHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALG 248

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
           EI  L  + RP + ++T +APAHLS   G I  +A AKAE+F+G        +N DD
Sbjct: 249 EISTLAKIARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADD 305


>gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
 gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
          Length = 525

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 22/345 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFEL 167
           +I ITGS GKT+ K  LT  LS         GSYN  +GV +T+     P+   F + E+
Sbjct: 179 VIGITGSYGKTSVKHFLTRILSEKYNVVMTPGSYNTPMGVTITIRNHIKPIHEIF-VCEM 237

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G   +G+I+ L +L  P I ++T +A  HL  F  IE I   K E+ + L K G  +LN+
Sbjct: 238 GAKQIGDIKELCNLAHPQIGILTAVADQHLDTFGSIENIQKGKFELIDALPKDGVGYLNF 297

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
           D   +E +K  S    ++   YS  +  +AD+Q R  +  ++     V  +  K ME+  
Sbjct: 298 D---YEYVKNHSPIAHVENHAYSLHQP-DADYQARDLQYTAKGMQFSVYHKNEKVMELET 353

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L+   +       +     A+    P + R +  R   N G  T++D++
Sbjct: 354 KLMGEANMSNILVCCAVALRFDVPIKNIQFAVKNLQPVKHRMELKR---NPGGITILDDA 410

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N+NPA  K A++VL QI     G+++ +   M E+ E     +  L E ++ +    + 
Sbjct: 411 FNSNPAGAKMALNVLKQIE---GGQKVIITPGMIELAEKEYELNKVLGEQIAEHVDYAIL 467

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +     L +++ L      +Y E      L+I  +L D +  ++K
Sbjct: 468 VGPKQTLPIQEGLKNK---NYPEDR----LYIARNLTDANQHLMK 505


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 30/409 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+  P+E  FFAI     +G  +I    +
Sbjct: 20  YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78

Query: 63  KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G    VV ++               M      L +P     + L AL KLA   R   +
Sbjct: 79  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLAEQHRGSFQ 133

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE 
Sbjct: 134 IPVVGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 193

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 194 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 250

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+        KS     +  +S    +   +  R  K+  + + +  +            
Sbjct: 251 DNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKK-EDHTVISYRYLEMDNTFCIPF 309

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    D   + ++   P      R      +    LI++SYN
Sbjct: 310 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 366

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           ++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 367 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 415


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 30/409 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+  P+E  FFAI     +G  +I    +
Sbjct: 20  YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78

Query: 63  KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G    VV ++               M      L +P     + L AL KLA   R   +
Sbjct: 79  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLAEQHRGSFQ 133

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE 
Sbjct: 134 IPVVGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 193

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 194 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 250

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+        KS     +  +S    +   +  R  K+  + + +  +            
Sbjct: 251 DNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKK-EDHTVISYRYLEMDNTFCIPF 309

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    D   + ++   P      R      +    LI++SYN
Sbjct: 310 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 366

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           ++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 367 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 415


>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
 gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
          Length = 1035

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 118/271 (43%), Gaps = 33/271 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGIS---IDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W F     A     +   P+G     S   ID R +AP + + AI+G  +DGH F   A 
Sbjct: 496 WGFPLAEMAAAAGGVLHAPEGCAEAASRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAA 555

Query: 62  QKGAGLVVVNT--------------------DMVASIGSLS---------IPVFGVDDVL 92
             GA  ++V                      D   ++GS++         +PV+G  +  
Sbjct: 556 NAGACALMVERGRAPRDAAGNALKLAVIEVDDTRLALGSVARWHRARWGELPVYGCPNTG 615

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           G  +      R R+   ++ ITGS GKTTTKE++  ALS+    +A   S+NN  GVPLT
Sbjct: 616 GDRDGDNGDERARAAKPVVGITGSAGKTTTKELIAAALSARYAVHATRASFNNETGVPLT 675

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L  +       + E+GM  LG+I +L  L  P +A +     AH+      E I   K+E
Sbjct: 676 LLALMPHHGAAVIEMGMRGLGQIAYLAELSAPTVAAVLNAGTAHIGVVGSAEGIVRGKSE 735

Query: 213 IFEGLEKTG-TIFLNYDDSFFELLKAKSHAL 242
           IF  L + G  ++   D+   E  +A    L
Sbjct: 736 IFAALGEGGVAVYPGDDERLSEYARAAGRVL 766



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 21/254 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR + P + F A++G   DGH ++   +  GA  VVV   +     +  +   
Sbjct: 26  IRAVRDDSRRVGPGDLFVAVRGARTDGHAYLPAVIDAGAAAVVVERAIEDPALAARVTQV 85

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   AL  LA  +A R   +  ++ ITG+ GKTT   ++   L +   T   IG+ +
Sbjct: 86  IVPEGARALGVLAARMAGRPGERMRLVGITGTNGKTTCSYLIESILRAHDATCGVIGTVS 145

Query: 145 NHIG-----VPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              G      P T          L  M        + E+  + L   R     V   +A 
Sbjct: 146 YRYGAREVPAPYTTPTALILQEALGEMVAASCTHAVLEVSSAALAMERLSGTTV--EVAA 203

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T     HL     ++   +AK  +F   L + G   ++ DD     + A +    +  +
Sbjct: 204 FTNFTQDHLDVHGSMDAYRAAKERLFRDHLAENGVAVIDVDDKAAPHMIAAAGERRVVRV 263

Query: 248 YSFGKSKNADFQLR 261
            +   +  AD ++R
Sbjct: 264 SARPGATAADAEVR 277


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 30/409 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+  P+E  FFAI     +G  +I    +
Sbjct: 12  YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70

Query: 63  KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G    VV ++               M      L +P     + L AL KLA   R   +
Sbjct: 71  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLAEQHRGSFQ 125

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE 
Sbjct: 126 IPVVGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 186 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+        KS     +  +S    +   +  R  K+  + + +  +            
Sbjct: 243 DNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKK-EDHTVISYRYLEMDNTFCIPF 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    D   + ++   P      R      +    LI++SYN
Sbjct: 302 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           ++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 359 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 407


>gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Treponema denticola F0402]
          Length = 430

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 26/388 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR++     F  ++G + DGH +I  A++ GA   VV+ D +    +  + +    
Sbjct: 41  VVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLSLCKNY 100

Query: 90  D-----VLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           D     V   L  L  AAR           I ITGS GKTTTKE+L    S    T +  
Sbjct: 101 DASCVAVKNNLKALQDAARYYLSKFPNLYKIGITGSSGKTTTKEILASIYSKKYNTVSTK 160

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ N+  G+PL++  +  + + GIFELGM+  GEI  +  ++ P+ A+IT I  AH+   
Sbjct: 161 GNLNSETGLPLSVFEVRPEHEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGIL 220

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              + IA  K EIF   +     F+  +  F + LK         ++++   + ++  Q 
Sbjct: 221 GTKQAIAEEKKEIFSFFKDDALGFIP-ECEFTDFLKDVPRG----SVFTVSDNDSSLVQ- 274

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               +  +   +  ++  +  E++    G +  +N L+ + +              L   
Sbjct: 275 ----KVEDAGVLGSKIFYRGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAV 330

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P  GR +     +  GF T   + YNANP SMK+AI     I  + E  +  VL  M E
Sbjct: 331 RPLFGRSQ-----VLHGFVTYFLDCYNANPDSMKSAIEFCDSI--NTECAKHYVLASMLE 383

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +G  S   H  + E     N  +++  G
Sbjct: 384 LGAKSDYEHKKIIEDALKSNADNLYFFG 411


>gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
 gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
          Length = 438

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 192/433 (44%), Gaps = 61/433 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR      AF A+ G    G+ FI  A+++GA  V+  TD+  +   L   V  V 
Sbjct: 24  LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVL--TDLPGAASRLPRTV-EVP 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNN 145
           D L AL   A   R ++   ++ +TGSVGKTTTK  +  AL +    +  T   I  +  
Sbjct: 81  DSLAALTAWAQQERAKNP-LVVGVTGSVGKTTTKSYVAAALDAHYMPVYNTIPAIACFLT 139

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             G     +  P+     + E+G+  +GE+  L  LVRP + V+T+I  AHL   S +E 
Sbjct: 140 EFGS----SERPL-----VVEMGIDRVGEMDRLISLVRPDVGVLTSIGAAHLEGLSSLEV 190

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA  K +I   L     +  N    +F            + IY F   +           
Sbjct: 191 IAQEKGKI---LHSPRALVGNQARVWFPE----------QEIYGFSTPELP--------- 228

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-----NMLMTLGIVSILTADVDTAIKALSVF 320
             + S  ++++  +  +  + G   H+            LG+    T  V  A     V 
Sbjct: 229 -VQHSGQDLRVNEQGADFTYRGQTVHLPNAAQVQAEAAVLGLYLAETYGVPLAAAIQRVE 287

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             +   G RY+  ++ G +T+ID++YNA+P +++AA+S L        GRRI+VLG M E
Sbjct: 288 QVQVPSG-RYQ--IHSGRYTVIDDAYNASPLAVQAALSALQNF----RGRRISVLGTMLE 340

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  +   H ++    S    + +    F V    + L    H H   T+  L   +++ 
Sbjct: 341 LGPTAPELHAEVGR--SACESADLC---FGVGPYAELL--GHHAH--RTVPELTAALKAE 391

Query: 441 LVDGDVVVVKSSN 453
           + DGDV++VK+S 
Sbjct: 392 VQDGDVILVKASR 404


>gi|239636818|ref|ZP_04677820.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
 gi|239598173|gb|EEQ80668.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
          Length = 686

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 185/409 (45%), Gaps = 22/409 (5%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           +G+D I  +     GL++  T  V  +    IP   V D + A   LA+  R + K  +I
Sbjct: 63  EGNDLIDKS-NPNVGLIITET-YVEGL-EYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVI 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS+GK++T+ MLT +L          G+ N    +   + ++  + DF + E  ++ 
Sbjct: 120 AITGSMGKSSTR-MLTASLLKDYPIQENRGNNNIRAAIYANMLKLIKNPDFAVIETSLNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +      +  ++P IAVIT I  AH S F+ I+EIA  KA IF GL + G   +N D  F
Sbjct: 179 INHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIINGDTMF 238

Query: 232 FELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + L  +A  +   ++T YS G S ++  +  +         +E+++ G+      +   
Sbjct: 239 ADYLIDQAHQYTQNVQT-YSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFS 297

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             M  N L  + I+  L  ++    + L  F P     K           TLID+++NA+
Sbjct: 298 DGMISNTLAAILILKNL--NIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDTHNAS 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +M  AI      +   +G +I  LG + ++G  S+  H +L   LS  N         
Sbjct: 356 LPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNAD------- 408

Query: 410 HVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++L L D L       ++ H+ Y    + +   ++    +  VV++KSS
Sbjct: 409 YILCLDDDLRPVVNKIKNKHITYYPNKELMINDLKYLCNEDSVVLLKSS 457


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 183/411 (44%), Gaps = 33/411 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T  ++ + I+   IG   Q  +N +  DSRS++ P E  FFA+     DG  +I     
Sbjct: 3   YTIEEITRIIKAKRIG-DNQTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYS 61

Query: 63  KGA-GLVVVNTD--MVASIGSLSIPVFG------VDDVLGALNKLAVAARLRSKATIIAI 113
           +G    V+ N +  ++A   S  I  +       V++ L AL KLA   R +    ++ I
Sbjct: 62  RGVRNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGI 121

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKT  KE L   L+S KK      SYN+ IGVPL+L +M  D D  I E G+S   
Sbjct: 122 TGSNGKTVVKEWLHQILASSKKIVRSPRSYNSQIGVPLSLWQMHSDADVAIIEAGISQPD 181

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  L  ++RP I V+T +  AH  NF  ++E    K ++F+  +    +    D+    
Sbjct: 182 EMGALESMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFKHCD---VVIYEADNDLIS 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +KS     +  +S    +   F +   ++   ++ +  +  G         I     
Sbjct: 239 NCMSKSMLTSREIAWSRYDMERPLF-ISGIQKDENETTISFRYLGLDNYYKIPFIDEASI 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESY 346
           +N +  L I   L    D     ++   P       KEG+     C        +I++SY
Sbjct: 298 ENSIQCLAICLYLMIPADQIRAGMAQLEPIAMRLEVKEGKNN---C-------LIINDSY 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           N++ +S+  A+    + S     +R  +L D+ E G+ + + +  +++++S
Sbjct: 348 NSDLSSLDIALDFHYRRSLQKGLKRTLILSDLLETGQNTSTLYRRVSQLIS 398


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 177/409 (43%), Gaps = 30/409 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   +++      +G  P   ++ +  DSRS+  P+E  FFAI     +G  +I    +
Sbjct: 12  YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70

Query: 63  KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G    VV ++               M      L +P     + L AL KL+   R   +
Sbjct: 71  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLSEQHRGSFQ 125

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE 
Sbjct: 126 IPVIGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 186 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+        KS     +  +S  K       + + ++  + + +  +            
Sbjct: 243 DNEMISNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPF 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    D   + ++   P      R      +    LI++SYN
Sbjct: 302 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           ++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 359 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 407


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 177/409 (43%), Gaps = 30/409 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   +++      +G  P   ++ +  DSRS+  P+E  FFAI     +G  +I    +
Sbjct: 3   YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 61

Query: 63  KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G    VV ++               M      L +P     + L AL KL+   R   +
Sbjct: 62  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLSEQHRGSFQ 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE 
Sbjct: 117 IPVIGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 177 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+        KS     +  +S  K       + + ++  + + +  +            
Sbjct: 234 DNEMISNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPF 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    D   + ++   P      R      +    LI++SYN
Sbjct: 293 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           ++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 350 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 398


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 191/428 (44%), Gaps = 26/428 (6%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           FFAIKG ++D H +I   + KG    VV    + +    +  I    V++ L AL + A+
Sbjct: 9   FFAIKGQNHDAHLYIEELISKGVRYFVVEYIPEHLYEKANFII----VENSLKALQQTAI 64

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R +     + ITGS GKT  KE L   LS          SYN+ +GVPL++  +    
Sbjct: 65  GYRKKFDFPFVGITGSNGKTIVKEWLNFLLSPNHLIVRNPKSYNSQVGVPLSVLGVEGIY 124

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           DFG+FE G+S   E+  L  ++ P   ++T I  AH   F   E     K ++FE     
Sbjct: 125 DFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEGFPNREAKIKEKIKLFEN---C 181

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             IFL  ++S   LL  K      K  +SF  S      L   K+ +  + +  +    S
Sbjct: 182 TDIFLEKNESIEVLLSNKIQ----KHTWSF--SDETAHLLVTQKKENNTTQLTFKNSTTS 235

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V+      +  +N +  +  +  L  D+    K +   +P E R +  +   N     
Sbjct: 236 FSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVGELYPVELRLQAKKGINN---CL 292

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+SY+ +  S+K A+  L Q   H   ++  +L D+   G  S++ +  +  +LS   
Sbjct: 293 VIDDSYSLDYPSLKIALDFLEQQKLH--DKKTIILSDIFNSGIASETLYNQVKNLLSKNK 350

Query: 401 ISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           I  +   G  +   LKD LP  I   ++ T + L  F   S    + ++VK S S  F+ 
Sbjct: 351 IGRIITIGEIINKHLKD-LPNVI--SFATTQEFLQQFNTQSF-QNETILVKGSRSFNFHE 406

Query: 460 LINLLLEE 467
           ++ +LLEE
Sbjct: 407 IV-VLLEE 413


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 202/445 (45%), Gaps = 18/445 (4%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88
           DSRS+  P+E  FFA+K    DGH++I    ++G    VV T++ A+  S         V
Sbjct: 30  DSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVV-TEVPANCASDYPDANFLRV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            + L AL +LA   R      ++ ITGS GKT  KE L   LS          SYN+ IG
Sbjct: 89  VNTLEALQRLAERHRDEFNIPVVGITGSNGKTMVKEWLYQLLSPQMCVTRSPRSYNSQIG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  M    + G+FE G+S  GE+  L  +++P IAV+T I  AH  NF    +   
Sbjct: 149 VPLSVWLMNEQTEVGVFEAGISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCK 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFG---KSKNADFQLRKW 263
            K  +F       T+  N DD   E  L + +S   G +     G   + ++A   ++  
Sbjct: 209 EKLVLFHDAR---TVVYNADDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSI 265

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHP 322
           ++  ++S   V    K  E   + I +    ++  ++ I +I+   +  A   L      
Sbjct: 266 EK--KESATTVTYIYKGGEENWYSIPFIDDASICNSI-ICAIVALRIGIAPDELDRRMQG 322

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R      Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + G
Sbjct: 323 IEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDHKGRRHTLILSDIFQSG 382

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E   + + +++++     +      G  + A  + +  +    +    + +   +  SL 
Sbjct: 383 EEPTALYQEVSDLARERGVVKFIGIGPEICAQSERIQIAEKDFFGSVEEFIVSDVFRSLR 442

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           D +V+++K +   GF RL  LL+++
Sbjct: 443 D-EVILLKGARRFGFDRLTELLVKK 466


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 202/445 (45%), Gaps = 18/445 (4%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88
           DSRS+  P+E  FFA+K    DGH++I    ++G    VV T++ A+  S         V
Sbjct: 30  DSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVV-TEVPANCASDYPDANFLRV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            + L AL +LA   R      ++ ITGS GKT  KE L   LS          SYN+ IG
Sbjct: 89  VNTLEALQRLAERHRDEFNIPVVGITGSNGKTMVKEWLYQLLSPQMCVTRSPRSYNSQIG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  M    + G+FE G+S  GE+  L  +++P IAV+T I  AH  NF    +   
Sbjct: 149 VPLSVWLMNEQTEVGVFEAGISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCK 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFG---KSKNADFQLRKW 263
            K  +F       T+  N DD   E  L + +S   G +     G   + ++A   ++  
Sbjct: 209 EKLVLFHDAR---TVVYNADDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSI 265

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHP 322
           ++  ++S   V    K  E   + I +    ++  ++ I +I+   +  A   L      
Sbjct: 266 EK--KESATTVTYIYKGGEENWYSIPFIDDASICNSI-ICAIVALRIGIAPDELDRRMQG 322

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R      Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + G
Sbjct: 323 IEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDHKGRRHTLILSDIFQSG 382

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E   + + +++++     +      G  + A  + +  +    +    + +   +  SL 
Sbjct: 383 EEPTALYQEVSDLARERGVVKFIGIGPEICAQSERIQIAEKDFFGSVEEFIVSDVFRSLR 442

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           D +V+++K +   GF RL  LL+++
Sbjct: 443 D-EVILLKGARRFGFDRLTELLVKK 466


>gi|213419637|ref|ZP_03352703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 303

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 11/265 (4%)

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  + 
Sbjct: 1   NDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLA 60

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263
            +A AK EI+ GL + G   +N D++  + L  +S  +G + ++ F   + N+DF     
Sbjct: 61  GVAKAKGEIYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANI 117

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S  +   +Q    S++V+    G H   N L    +   + A +      L+     
Sbjct: 118 HVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAV 177

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G 
Sbjct: 178 PGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGA 230

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            S++ H+ + E      I  V  +G
Sbjct: 231 ESEACHLQVGEAAKAAGIDRVLSTG 255


>gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
          Length = 459

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 207/456 (45%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
             G++  S  + P +AFFA+ G    G  +   A+Q GA  +V  +D     G L++P  
Sbjct: 26  ARGVAFHSARVRPGDAFFALPGASSHGLRYADAALQAGAAFIV--SDRPHPRG-LTVP-- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D    L +L   AR   +  +I +TGS GKT+T+ +L    ++    +A  G++N  
Sbjct: 81  ---DPARLLLQLGRVARAALQGPVIGVTGSAGKTSTRALL----AAALGAHATRGNFNT- 132

Query: 147 IGVPLTLARMPVDV---------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              PL LA+  V+          D  + ELG+ H GE+  L  L RP + V+T IAPAHL
Sbjct: 133 ---PLALAQTLVEAWLEDRTGAHDRLVLELGIDHTGEMDELVELTRPTLGVVTLIAPAHL 189

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSF-GKSKN 255
                +E +A  K ++  G+         Y   F  L  A+  AL G  T+Y   G+   
Sbjct: 190 DGLGSVEGVAREKFKLLTGVRHAWVSAQAY--PF--LTPAQRAALQGRLTVYGLDGRETP 245

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              + ++       +     L    + V        +A+N L  L + + L  D   A  
Sbjct: 246 TGGEAKRVTGHFASAAGGGALHALGLRVPLALPSPALAENALCALAVAAHLGVDPAAAAA 305

Query: 316 AL--SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRI 372
            L  +V  P  GR +R++     G  TL+D++YN+NPAS++AA++ L+ +  PH      
Sbjct: 306 RLQGAVLEP--GRLQRHQL----GALTLLDDAYNSNPASVRAALTALAALPRPH-----T 354

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           AVLGDM E+G  S   H  LAE      +  V   G  + AL +A PR++++   + ++ 
Sbjct: 355 AVLGDMLELGAASAELHRALAE--DTAALDAVVAVGPAMRALAEADPRAVYLEAFD-LEA 411

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L   +         ++VK S      RL   LL  +
Sbjct: 412 LLALVPER----GTLLVKGSRGVRLERLTEALLRRY 443


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 199/468 (42%), Gaps = 45/468 (9%)

Query: 14  IQGHSI--GIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +QG  I     P  F+  + IDSR + AP  A FFAI G H+DGH  I    +KG  + +
Sbjct: 35  VQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHAHITEMYKKGVRIFI 94

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEML 126
           V      SI    IP      V  +++ L   A  R K     I+AITGS  KT  KE L
Sbjct: 95  VE----KSISLNEIPQAACIRVKSSVSALQACAAYRRKQLDIPIVAITGSNAKTIVKEWL 150

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  +++         SYN+ IGVPL++  +      GIFE G+S   E++ L  ++ P I
Sbjct: 151 SQTVAADYSVVKSPRSYNSQIGVPLSVWALNERHTIGIFEAGISTTKEMQALQKVIEPTI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            + T I  AH   F   EE    K ++F   +    + +   D   E + A+  A  + T
Sbjct: 211 GIFTNIGSAHDKGFKNREEKIQEKLKLFADCK----VVIYCSDH--EEIHAEITAQHLPT 264

Query: 247 I-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---------HMAQNM 296
             +S   S   ++ +      + +   + Q++ K+ E  H G  Y           A ++
Sbjct: 265 FNWSLQSSATIEYSI------AAKDSFQTQIEVKTKE--HQGFFYLPFVDDASIENALHV 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
             TL  +     +V   I  L      +  G R           LID+SYN + A +  A
Sbjct: 317 ATTLFYLGYSIQEVSRKISGL------QAVGMRLELKEANNDCYLIDDSYNNDLAGLSIA 370

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L  +    E + + +L D+ E G  S   + ++A  L+   +  V   G  +  LK 
Sbjct: 371 LDFLEHVK-QSEVKTV-ILSDVLESGLDSAVLYKEVASYLTTAQVQRVIAIGSQITELKK 428

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +    Y  T +     +  ++ + ++V+VK +    F ++++ L
Sbjct: 429 WY--NGRAEYYPTTEAFIKDLTKTVFEKEIVLVKGARIFQFEKIVSRL 474


>gi|70727423|ref|YP_254339.1| hypothetical protein SH2424 [Staphylococcus haemolyticus JCSC1435]
 gi|68448149|dbj|BAE05733.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 686

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 166/363 (45%), Gaps = 23/363 (6%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG+D + +      GL++  T+   S     IP   V+D + A  +LA+  R +    +I
Sbjct: 63  DGNDLV-NKENGEIGLII--TENYISDLKFEIPQIIVEDSVQAFKQLAIYIRNQYTNPVI 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS+GK++T+ ML  +L          G+ N    +   + ++  + DF + E  M+ 
Sbjct: 120 AITGSMGKSSTR-MLITSLLGDYNVLENRGNNNVRAAIYNNMLKLIKNPDFAVIETSMNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDS 230
           +  +   +  ++P IA+IT I  AH S F  +++IA  K  IF+GL   TG   +N D  
Sbjct: 179 INYLENTSTFLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRIFDGLSSTTGVAIINKDTL 238

Query: 231 FFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
           + + L  K+H      + YS  K   AD  +   K       + +  Q    E+   + I
Sbjct: 239 YADYLIDKAHENASNVLTYSINKDAKADLTVDNIKYNKGSIELSITNQENKSEIYRLNTI 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTL 341
              M  N L +  I+++ + ++    + L+ F P       KE   K ++        TL
Sbjct: 299 SEGMVSNTLAS--ILTLKSLNLPIKQELLNDFKPFSKILALKEIHAKTHK-------LTL 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+++NA+  +M  AI   +  +    G +I  +G + ++G  S   H+ L E L   N 
Sbjct: 350 LDDTHNASLPAMINAIRAFNSQTKFYSGHKIIAIGKISDLGRKSNETHLKLVEELENSNA 409

Query: 402 SHV 404
            ++
Sbjct: 410 DYI 412


>gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
 gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
          Length = 429

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 188/451 (41%), Gaps = 92/451 (20%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR  +P+ AF A+ G    G+ F+  A+  GA  V+ + D+  ++    +P     
Sbjct: 24  LTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLTDLDVPRAV---RVPSQAGQ 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-------IKKTYACIGS 142
               AL   A A R ++   ++ ITGSVGKTT K     AL++            AC   
Sbjct: 81  GAREALFAWARAERAKNP-LVVGITGSVGKTTAKSYAAAALNAHFMPVYNTMPAIACFLI 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                G PL            + E+G+  +GE+  L  LVRP + V+T I  AHL     
Sbjct: 140 EFGASGAPL------------VVEMGIDRVGEMAELVDLVRPDVGVVTAIGAAHLEQLGS 187

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E +A  K  I +G  + G +       F        H       Y FG+          
Sbjct: 188 LEGVAREKGVILQG--RRGLVGTQAAPWF-------PH----TPTYGFGEG--------- 225

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV------------ 310
                      V   G+++ V   G  +   Q + +TL + S + A+             
Sbjct: 226 -----------VTYAGEALTVSPQGAQFTF-QGVPVTLPLASRVQAEAAVLGLALALEAG 273

Query: 311 ----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               + A +  +V  P    G RYR  ++ G FT+ID++YNA+P ++ AA+  L+     
Sbjct: 274 LPLPEAAQRLAAVQVP----GGRYR--VHPGRFTVIDDAYNASPLAVTAALDALATFG-- 325

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             GRRI+VLG M E+G   +  H  +  V +       +  G     L +   R++    
Sbjct: 326 --GRRISVLGRMLELGATERELHAQIG-VHARQKADLTYGVGAFAAELGERAYRTV---- 378

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            E ++ L   ++    DGDVV+VK+S    +
Sbjct: 379 PELLEDLLAEVR----DGDVVLVKASRGISW 405


>gi|150391164|ref|YP_001321213.1| Mur ligase middle domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951026|gb|ABR49554.1| Mur ligase, middle domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 173/376 (46%), Gaps = 38/376 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGM 169
           IAITGS GKTTTKEML   L +  K +    + N         ARM      G + E GM
Sbjct: 46  IAITGSAGKTTTKEMLASILQTKWKIFKSKENKNFQKNTQ-KHARMIKPWHQGVVLEFGM 104

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +     ++P+IAVIT +  AH   F + I+  A AK+E+ + ++  G +++N D
Sbjct: 105 GEANTGKMHCSHIQPNIAVITNVGSAHYGVFGNSIKLTAKAKSELIKYMKPEGILYINND 164

Query: 229 DSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+  +LL+ K    G K  I++      +D+Q    K   +    +V+L  +  +     
Sbjct: 165 DNNSKLLQIK----GFKGEIFTVSIKNKSDYQAVNIKYVDQGMTFQVKLDDQLEDFFIPT 220

Query: 288 IGYHMAQNMLMTLGI----------VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            GYH   N L  +G+          + +   + +  ++ L+ +    G            
Sbjct: 221 FGYHNVINALFAIGVSHHQKFSPSEIKVGLKNYEVPVRRLNHYELPNG------------ 268

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D+SY+ANP + KAAI VL ++      +++ +LG M E+GE S   H ++ + L+
Sbjct: 269 -LVILDDSYSANPEATKAAIDVLVELGK--IKKKLVILGSMLELGEYSIEGHKEVGKYLA 325

Query: 398 LYNISHVWLSGFHVL-----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              +  + + G         A++   P S  + ++++ + + L++Q  +     ++VK S
Sbjct: 326 QNKVDKIVIIGKEARWIGKGAVEAGYPPSRILLFTKSRNKMHLYLQKLIKPNMAILVKGS 385

Query: 453 NSCGFYRLINLLLEEF 468
                 + +N LL+ F
Sbjct: 386 KLMQMNKTLNYLLKNF 401


>gi|167629674|ref|YP_001680173.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592414|gb|ABZ84162.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 599

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 156/357 (43%), Gaps = 42/357 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D   +   A +KG G++V+     ++  + ++ V GV  V  A  +L  A R R KA I+
Sbjct: 52  DPAGYAARAARKGVGVLVLPDRTASAAANAAVAVIGVGSVRDAYFRLVKAYRHRCKARIV 111

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGS GKTTTKEM+   L+   +      +YN   G+  TL R+     FG+ ++G   
Sbjct: 112 AVTGSAGKTTTKEMIAAVLAEAGEVQKNWRNYNGPYGIGYTLFRLRPHHTFGVVKIGAYI 171

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              I F   LV P + VIT I   H +   G E +   K ++   L K G + LN DD  
Sbjct: 172 PNSIDFGARLVAPEVGVITCIGLGHAAALGGGEGVRREKEKLLTHLPKKGLLVLNGDDPG 231

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-------------CSEQSWMEVQLQG 278
              +        ++ +    + +  D  L  W +             C  +  +EV+L G
Sbjct: 232 CRSVDLSRCQAPVRWVGV--ECEREDLSL--WAERIQVHRDGTRFLLCGLEREIEVELPG 287

Query: 279 KSME------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                     ++   +G HM    L    I S LT    T  +    F P    G+R   
Sbjct: 288 FFGRPAVIDALLAAAVGDHMG---LPPESIASGLTKVEYTPRR----FSPIRLPGRRL-- 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                   LID +YNANP SM A++   ++++  G+G  +A+LG M  +GE +   H
Sbjct: 339 --------LIDATYNANPHSMSASLESAAKLAVEGKG--LALLGTMSNLGEEAPEQH 385


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    I  G L +   G 
Sbjct: 14  DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 73

Query: 89  DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           DD                     L AL KLA A R + K  +I ITGS GKT  KE L  
Sbjct: 74  DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 133

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 134 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 194 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N+L  L     L  
Sbjct: 251 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 309

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 310 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 360 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 394


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 197/445 (44%), Gaps = 25/445 (5%)

Query: 30  ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF- 86
           I  DSRS+  P+E  FFA+     +GH +I    Q+G    VV+   V          F 
Sbjct: 27  ILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQRGVRNFVVSAVPVGYDKLYPEANFL 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +LA   R      I+ ITGS GKT  KE L   LS          SYN+ 
Sbjct: 87  KVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTMVKEWLYQLLSPQFYVTRSPRSYNSQ 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPL++  M      G+FE G+S  GE+  L  +++P IAV+T +  AH  NF  IE+ 
Sbjct: 147 IGVPLSVWLMNEQTQVGVFEAGISKPGEMNALRDIIQPTIAVLTNLGDAHQENFGLIEDK 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K  +F   E   T+    DD     +  +    G +  +S  K K A F ++  ++ 
Sbjct: 207 CREKLILFHDAE---TLIYPADDEIISKVITEYDYPGERLYWSM-KDKEAPFFVKFVEKK 262

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---LTADV-DTAIKALSVFHP 322
              + +    +GK        I      N ++   IVS+   +T DV D  ++ L     
Sbjct: 263 ETMTTVTYIYKGKEDWYSLPFIDEASVVNSIVC-AIVSLHLGVTPDVLDQRMQQL----- 316

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R      Q   TLI++SYN++  S+  A+  +++   H    R  VL D+ + G
Sbjct: 317 -EPVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRSRTLVLSDIDQSG 375

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +   + +++ +     ++ +   G  +   +DA+ +    ++  T++    FI+S + 
Sbjct: 376 REASELYREVSNLAVKRGVTKLIGIGPQLTEQQDAI-KVTQKYFFPTVEA---FIKSGVF 431

Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464
                +V+++K +   GF  L  LL
Sbjct: 432 QALRDEVILLKGARRFGFDSLSELL 456


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    I  G L +   G 
Sbjct: 30  DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 89

Query: 89  DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           DD                     L AL KLA A R + K  +I ITGS GKT  KE L  
Sbjct: 90  DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 149

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N+L  L     L  
Sbjct: 267 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 325

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    I  G L +   G 
Sbjct: 30  DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 89

Query: 89  DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           DD                     L AL KLA A R + K  +I ITGS GKT  KE L  
Sbjct: 90  DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 149

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N+L  L     L  
Sbjct: 267 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 325

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    I  G L +   G 
Sbjct: 4   DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 63

Query: 89  DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           DD                     L AL KLA A R + K  +I ITGS GKT  KE L  
Sbjct: 64  DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 124 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 184 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N+L  L     L  
Sbjct: 241 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 299

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 300 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 350 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 384


>gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
 gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 194/446 (43%), Gaps = 56/446 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V  +   S +  P   F A+ G    G  FI  A+ +GA LV+ +    A++      
Sbjct: 35  GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGASLVLADQAGPATLE----- 89

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V+D   AL +L  A R      ++A+ GS GKTTTKE L   L       A  G+ N
Sbjct: 90  ---VEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEALAQGLG----LPAPPGNLN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +      +       + ELG+   GE+  L  L +PH+AV+T +   HL  F  +E
Sbjct: 143 TAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPHLAVLTALGEEHLEAFGTLE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFG----KSKNAD 257
           +    +A +     +  T  +          +A    LG++    +Y F     + ++ +
Sbjct: 203 KAVQEEAHLL----RAPTALVGE--------QAAPLVLGLREDLLVYGFAEGTFRGRDLE 250

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             LR+ +          +  G  + V + G+G   A   L  L    +L   ++   + L
Sbjct: 251 LGLRESR---------FRYGGLHVRVPYPGLG--PAYGALAALAAAEVLGLSLEEVAERL 299

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S      GR +        G    ++++YNANP S+KA +  L+       GR+ AVLG+
Sbjct: 300 SRLTLPPGRMETREV----GGVVFVNDAYNANPLSVKAGLRWLAAQP----GRKWAVLGE 351

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S   H+++AE  +   +S ++L G H  A   A   +      E+++    ++
Sbjct: 352 MRELGRESLRLHLEVAEEAARLGLSPLYL-GPH--ARHQA---AFSGEAVESLEEALAWL 405

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463
           ++ +  GD+V +K+S + G  R++ L
Sbjct: 406 KARVAPGDLVYLKASRAVGLERIVEL 431


>gi|299536847|ref|ZP_07050154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727671|gb|EFI68239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 730

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 177/378 (46%), Gaps = 23/378 (6%)

Query: 101 AARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           + ++ +K T  IIAITGS GKTTTK  +   LS     +     +N           +  
Sbjct: 363 SKQVEAKKTLPIIAITGSAGKTTTKAFIGSILSKKWNVFESKDYWNTTEHTKKHKEEIND 422

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217
                + E GM++ G I     +++P+I+++T I  AH+ NF G +  +A AK+E+  G+
Sbjct: 423 SHQAVVLEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGM 482

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           ++ G + +N DD     L+ +     I T+   G  K AD++    +        +++L 
Sbjct: 483 DQQGLLIVNQDDDNSRYLETQQFKGKIITV---GIKKEADYRAYDLQYKDVGMSFKMKLH 539

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCAL 334
           G+ +E+    +G H   N L  + +  +L     D+ + +     F     R   Y C  
Sbjct: 540 GQEIELYIPILGEHHVYNALNAVAVADLLGFSPLDIQSGLN----FKKPPRRLTIYNCRD 595

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +    T+ID++ +++P  ++AA+ VL+ I+ +   R++A++G M E+G L +  +  + E
Sbjct: 596 D---ITVIDDTVHSHPQGVRAALDVLTNIATN---RKVAIIGQMRELGVLREEEYRKVGE 649

Query: 395 VLSLYNISHVWLSGFHVLALKD-ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +    I      GF    + + A+ + +    VH+    D L + ++  +   D ++VK
Sbjct: 650 YVYDIGIDEFITYGFRTDEMSNAAIAKGMDPSRVHHFINKDQLHVLLEKLIKPHDTILVK 709

Query: 451 SSNSCGFYRLINLLLEEF 468
            ++    +  +  L + F
Sbjct: 710 GASKTNMFETVKFLDQTF 727


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 159/371 (42%), Gaps = 55/371 (14%)

Query: 33  DSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85
           DSR ++  ++  FFAIKG  +DGH FI     KG    VV     N  +   +    +  
Sbjct: 16  DSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVKA 75

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VD  +  L ++A   R +    +I ITGS GKT  KE L   L           SYN+
Sbjct: 76  LLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDKDFDIVKSPRSYNS 135

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGV L++  M      GIFE G+S  GE++ L  +++P I V T I  +H   F    +
Sbjct: 136 QIGVALSVWEMSSRYQLGIFEAGISLPGEMKALQKIIQPTIGVFTNIGSSHSEGFESDRQ 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
               K ++F    K+ T+    D S  E           + + +F   +N + ++  W +
Sbjct: 196 KIREKLQLF---VKSETLIYCRDYSEIE-----------EEVNAFLLEQNPNLKIVSWSK 241

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNMLMTLGIVSILTADVDTAIKALS 318
                  +V+++      +  G  Y +        +N++    I++ L+   D  ++ L 
Sbjct: 242 A------DVEVKDGKAYFLWKGEKYELPFIDAASVENLVHC--ILAALSVKEDWDVRRLR 293

Query: 319 VFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +P       KEGR   Y          +ID++YN +   +K A+  +SQ   H    +
Sbjct: 294 FLNPVEMRLELKEGREDNY----------IIDDTYNNDLGGLKMALQFMSQ--AHTLRGK 341

Query: 372 IAVLGDMCEMG 382
           + +L DM + G
Sbjct: 342 VLILSDMFQTG 352


>gi|23011653|ref|ZP_00051948.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 194

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 94/164 (57%)

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H+A N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   LIDESYNANP
Sbjct: 2   HVAMNSLGVLACIHALGADLARAALSLAGLKPPVGRGERTALRIGGGEAFLIDESYNANP 61

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           AS++AA + L+ +    +GRRIAVLGDM E+G   ++ H +LAE ++   I  V+ +G  
Sbjct: 62  ASIRAAFATLAGVETGPKGRRIAVLGDMKELGAAGEAHHRELAEAVAANGIDLVFTAGPL 121

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  L +ALP ++    +     L   + ++L  GD V+VK SNS
Sbjct: 122 MAHLFEALPVAVRGTAAPKAAELTDAVLATLRPGDAVMVKGSNS 165


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 175/398 (43%), Gaps = 47/398 (11%)

Query: 27  VNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           +  I IDSR+     +  F AIKG  +DGH+FI      G    +++ ++          
Sbjct: 25  IENIFIDSRNAVSNIKNLFIAIKGERHDGHNFIADLYSNGIRNFIIDEEIKVD-KYPEAN 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            F  ++ + AL  LA   R   K  +I ITGS GKT  KE L   + S+   Y    SYN
Sbjct: 84  FFKTENSINALQALAGYKRKNFKGNLIGITGSNGKTIVKEWLAKLIESVYSVYRSPRSYN 143

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + +GVPL+L  +    D+ I E G+S +GE+  L  +++P I + T +  AH   F  +E
Sbjct: 144 SQVGVPLSLWHLNHYQDYAIIEAGISKMGEMEKLEAIIKPKIGIYTNLGTAHDEGFPSLE 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E A  KA++F   + + TI    D  F E+  A         ++S  K +  +F    ++
Sbjct: 204 EKAHQKAQLF---KDSSTIIFCKD--FPEISNA---------LHSLPKLEEKEFIGWSFE 249

Query: 265 QCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILT---------------- 307
             +   ++E + +     + +     +H+ Q        +  +T                
Sbjct: 250 DNTSNYFVETEGRNNGTAIRIPFEEQFHIFQVPFQDYASLENITHCLLLLLHEGLPIKVI 309

Query: 308 ADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            +    IK+L++    K+G+   Y          L+D+SYN +   +  A+   SQ    
Sbjct: 310 QNTLNDIKSLNMRLETKKGKNSTY----------LVDDSYNNDLVGLDTALQFFSQQK-- 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
              +RI +L D+ E G  S+  +  LA+ ++L  ++ V
Sbjct: 358 QFQKRILILSDLLETGLSSEVLYQQLADRIALEKLNLV 395


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 4/188 (2%)

Query: 27  VNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           V  +  DSRS++ +      F A++G ++D HDFI     +G    +V   + AS  +  
Sbjct: 23  VRSVVTDSRSLSCELGCRPMFVAMRGANHDSHDFIADMQSRGVRAFLVERGVEASSCTGE 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                VD+ + AL +LA   R + + T++ ITGS GKT  KE +   L    K Y    S
Sbjct: 83  CGFVQVDNAIEALQRLAAYHRAQFRGTVVGITGSNGKTVIKEWIAEELPEGMKYYRSPKS 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YN+ +GVPL++  +  D +  IFE G+S  GE+  L  ++RP   + T+I  AH  NF  
Sbjct: 143 YNSQLGVPLSVLMLEGDEELAIFEAGISKPGEMERLERIIRPDAVIFTSIGDAHQENFIN 202

Query: 203 IEEIASAK 210
           +E+    K
Sbjct: 203 LEQKCDEK 210


>gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 686

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 184/409 (44%), Gaps = 22/409 (5%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           +G+D I  +     GL++  T  V  +    IP   V D + A   LA+  R + K  +I
Sbjct: 63  EGNDLIDKS-NPNVGLIITET-YVEGL-EYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVI 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS+GK++T+ MLT +L          G+ N    +   + ++  +  F + E  ++ 
Sbjct: 120 AITGSMGKSSTR-MLTASLLKDYPIQENRGNNNIRAAIYANMLKLIKNPYFAVIETSLNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +      +  ++P IAVIT I  AH S F+ I+EIA  KA IF GL + G   +N D  F
Sbjct: 179 INHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIINGDTMF 238

Query: 232 FELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + L  +A  +   ++T YS G S ++  +  +         +E+++ G+      +   
Sbjct: 239 ADYLIDQAHQYTQNVQT-YSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFS 297

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             M  N L  + I+  L  ++    + L  F P     K           TLID+++NA+
Sbjct: 298 DGMISNTLAAILILKNL--NIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDTHNAS 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +M  AI      +   +G +I  LG + ++G  S+  H +L   LS  N         
Sbjct: 356 LPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNAD------- 408

Query: 410 HVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++L L D L       ++ H+ Y    + +   ++    +  VV++KSS
Sbjct: 409 YILCLDDDLRPVVNKIKNKHITYYPNKELMINDLKYLCNEDSVVLLKSS 457


>gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
 gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
          Length = 438

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 194/446 (43%), Gaps = 56/446 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V  +   S +  P   F A+ G    G  FI  A+ +GA LV+ +    A++      
Sbjct: 35  GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGASLVLADQAGPATLE----- 89

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V+D   AL +L  A R      ++A+ GS GKTTTKE L   L       A  G+ N
Sbjct: 90  ---VEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEALAQGLG----LPAPPGNLN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +      +       + ELG+   GE+  L  L +PH+AV+T +   HL  F  +E
Sbjct: 143 TAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPHLAVLTALGEEHLEAFGTLE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFG----KSKNAD 257
           +    +A +     +  T  +          +A    LG++    +Y F     + ++ +
Sbjct: 203 KAVQEEAHLL----RAPTALVGE--------QAAPLVLGLREDLLVYGFAEGTFRGRDLE 250

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             LR+ +          +  G  + V + G+G   A   L  L    +L   ++   + L
Sbjct: 251 LGLRESR---------FRYGGLHVRVPYPGLG--PAYGALAALAAAEVLGLSLEEVAERL 299

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           +      GR +        G    ++++YNANP S+KA +  L+       GR+ AVLG+
Sbjct: 300 ARLTLPPGRMETREV----GGVVFVNDAYNANPLSVKAGLRWLAAQP----GRKWAVLGE 351

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S   H+++AE  +   +S ++L G H  A   A   +      E+++    ++
Sbjct: 352 MRELGRESLRLHLEVAEEAARLGLSPLYL-GPH--ARHQA---AFSGEAVESLEEALAWL 405

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463
           ++ +  GD+V +K+S + G  R++ L
Sbjct: 406 KARVAPGDLVYLKASRAVGLERIVEL 431


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 187/436 (42%), Gaps = 53/436 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G   +  ++ +  DSRS++ P+E  FFA+     +G  +I     
Sbjct: 3   YTIESIAEYIGARRVG-EHEATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYISELYD 61

Query: 63  KGAGLVVVNTDMVASI---------------------GSLSIPVFG----VDDVLGALNK 97
           +G    VV  +    +                       LSI  F     V + L AL K
Sbjct: 62  RGVRNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLKALQK 121

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA A R   K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++ 
Sbjct: 122 LAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLN 181

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  
Sbjct: 182 EEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDC 241

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +    +  N D+       AKS     +  +S    K+ +  L   K   ++    +  +
Sbjct: 242 D---VVIYNGDNELISNCVAKSMLTAREIAWS---CKDIERPLYISKVTKKEDHTVIAYR 295

Query: 278 GKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGK 328
              M+ +     I     +N L  L     L    D   + ++   P       KEG+  
Sbjct: 296 YLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNN 355

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
              C        LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + 
Sbjct: 356 ---C-------ILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATL 405

Query: 389 HIDLAEVLSLYNISHV 404
           +  +A+++    I+ +
Sbjct: 406 YRRVAQLIKSRGINKL 421


>gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
 gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
          Length = 424

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 124/429 (28%), Positives = 190/429 (44%), Gaps = 62/429 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P  AF A+ G    G+ F+  A+  GA  V+ + D   ++         V 
Sbjct: 23  LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAPRAVR--------VP 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
           D   AL   A A R  +   ++ ITGSVGKTT K     AL      +  T   I  +  
Sbjct: 75  DAQVALFAWARAERAHNP-LVVGITGSVGKTTAKAYAAAALDAHFMPVFNTMPAIACFLI 133

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             G     +  P+     + E+G+  LGE+R L  LVRP + V+T+I  AHL  F  +E 
Sbjct: 134 EFG----RSARPL-----VVEMGIDRLGEMRELVDLVRPDVGVVTSIGEAHLEAFGTVET 184

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA  K  I E     G +           ++A     G  T Y FG++  A   L+   +
Sbjct: 185 IAREKGVILEA--PRGLVG----------VQASPFYPGRDT-YGFGEATFAGDALQVSAE 231

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKE 324
            +   + EV +       V        A+  ++ L +  +    V TA + L+ V  P  
Sbjct: 232 AAAFVYGEVPVALPHASKVQ-------AEAAVLGLALAEVAGVPVGTAAERLAGVSVP-- 282

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G RYR  +  G FT+ID++YNA+P S++AA+  L+ +     GR ++VLG M E+G+ 
Sbjct: 283 --GGRYR--VLPGRFTVIDDAYNASPLSVRAALDALAALP----GRHVSVLGRMLELGDT 334

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +  H      +  Y      ++ F V A    L    H     T+  L   + + + DG
Sbjct: 335 ERELHAQ----VGAYARQRADVT-FGVGAFASELGERAHA----TVPDLLADLLAEVRDG 385

Query: 445 DVVVVKSSN 453
           DVV+VK+S 
Sbjct: 386 DVVLVKASR 394


>gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
 gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
          Length = 430

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 200/437 (45%), Gaps = 50/437 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P  AF A+ G    G +F   A+Q GA LV+ +    A  G++      V 
Sbjct: 35  LTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVLTDQ---AHPGAVQ-----VA 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +L  A R     T++ + GS GKTTTKE +   L       A  G+ NN  G+
Sbjct: 87  DPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQGLG----WPAPEGNLNNAPGL 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                R+       + ELG+  LGE+  L +L  PH+ V+TT+   HL     +E +   
Sbjct: 143 AQFFFRLQPHAPGAVVELGIDRLGEMAELCYLAEPHLGVLTTLGAEHLEGLGTLENVIR- 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADFQLRKWKQ 265
                   E+TG +      S   L   ++  L    G+KT Y     +  DF+    + 
Sbjct: 202 --------EETGLL----ASSPVRLASTQAAELVNLPGLKT-YGI---EAGDFRATDLEL 245

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +    +  G+ + + + G G  +     +   +  ++   +D  I+ L+      G
Sbjct: 246 SLDST--RFRFNGQRVYLPYPGFGPLLGALAALA--VAELVGVALDPVIERLAHLQLPFG 301

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R    L++G    ++++YN+NP S++A +  LS    H  GR+  VLG+M E+GE S
Sbjct: 302 RMER----LHKGGLIFLNDAYNSNPLSVRAGLEFLS----HLPGRKWLVLGEMRELGEES 353

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            ++H++ A + +  +   V++  +      +     +     ET++    ++++    GD
Sbjct: 354 LAYHLEAARLAASVSPDVVFVGKYAPAQAAETGKVGL-----ETLEEAKAYLKTHAQAGD 408

Query: 446 VVVVKSSNSCGFYRLIN 462
           +V +K+S S G  +L+ 
Sbjct: 409 LVYLKASRSIGLEQLLE 425


>gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 385

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 83/382 (21%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR     + F  +KG +YD   ++   ++KGA ++       +SI        
Sbjct: 28  IERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGASVITKQKIFGSSIV------- 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDDV  +L  +     +++K  +I ITGS GKTT K+ML   L    K +A   + NN 
Sbjct: 81  -VDDVYSSLLDICANKLIKNKGKVIFITGSYGKTTIKDMLKSLLGD--KCHASKDNENNE 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            G+P T+  MP + ++ + E G  ++G+   ++  +   + ++T IA  HLS F  IE I
Sbjct: 138 FGIPFTILSMPKNTEYLVVECGARNIGDFDLISEKLYCDVFILTAIASNHLSTFKNIENI 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           +  K ++ E L+          D+F +  + K+  +       F K+K            
Sbjct: 198 SKTKLKLKECLKDK--------DNFVDGREIKNKNI-------FEKNK------------ 230

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                               GI       +  TL ++SI     D  +K   +F P  GR
Sbjct: 231 --------------------GI-------IQRTLTLLSI-----DKDLKEF-IFTPTAGR 257

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G   +   ++    +ID++YNA+P       +V++          I VLGDM E+GE   
Sbjct: 258 GNVIKLHGSE----IIDQTYNAHPD------TVIATAMEEDSNNTILVLGDMAELGEDEN 307

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
             H ++   L+ +    ++L+G
Sbjct: 308 KKHENVLNHLADF---QIFLTG 326


>gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 339

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 9/192 (4%)

Query: 31  SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           S+DSR I         +FA KG   DG  F+ + +  G      +    ++ +  +    
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 83  IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             VF +  +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEI 213
            ++ IA  K++I
Sbjct: 212 ELQAIAFEKSKI 223


>gi|224477766|ref|YP_002635372.1| hypothetical protein Sca_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422373|emb|CAL29187.1| hypothetical protein SCA_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 675

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 24/324 (7%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP   V + + A+  LA+  R   +  I+ ITGS+GK++T+ MLT AL+ +K      G+
Sbjct: 91  IPQIVVKNSIKAMKILALYIRKNYRNPIVCITGSMGKSSTRLMLTAALAPLK-VQENRGN 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            N    + L + ++  + D  IFE  ++ L     +  +++P IA++T I  AHLS    
Sbjct: 150 SNTRSAIYLHMCKLAANPDIAIFETSLNALNNRGNMASVLKPDIAIVTGIGSAHLSTIGS 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYD---DSFFE--LLKAKSHALGIKTIYSFGKSKNAD 257
            EEIA  K+ IF GL + G    N D   ++F +   LK  S   G    YS   SK AD
Sbjct: 210 TEEIAEYKSRIFAGLNEKGIAIYNADTLHNAFLKDVALKHTSKVYG----YSTENSK-AD 264

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAI 314
                     E + +   ++ K+ +  H     +   M +N L  L  +  L  +VD  +
Sbjct: 265 L------YTEEITPIRKAVKVKTNDGTHFTVPSVSNGMVENALAVLLTLKHLDINVDEKL 318

Query: 315 KALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             LS      K    K    A      TL+D+++NA+  +M  AI      S   EG +I
Sbjct: 319 DNLSNTQLFKKVLEFKNIHSATENA--TLLDDTHNASLPAMINAIQAFDSQSKFFEGHKI 376

Query: 373 AVLGDMCEMGELSQSFHIDLAEVL 396
             LG + ++GE + + H  L  +L
Sbjct: 377 IALGQISDLGEQTDNVHAKLVPIL 400


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 184/449 (40%), Gaps = 43/449 (9%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG------VD 89
           S+A +  FFAI G H+DGH FI    +KG    V+    +       +  +       VD
Sbjct: 27  SLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREELATYADAQFTKVD 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             L  L  LA   R + +  +I ITGS GKT  KE L   L+          SYN+ +GV
Sbjct: 87  SSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLADEYVIARSPKSYNSQLGV 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ ++       IFE G+S   E++ L  ++RP I + T I  AH   F   ++  + 
Sbjct: 147 PLSVHQLNESHTMAIFEAGISQTQEMQALEAIIRPTIGIFTNIGTAHDQGFRTRKQKVAE 206

Query: 210 KAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K  +F   G     T + + D+    LLKA                 N D +   W    
Sbjct: 207 KLRLFIHAGTLIYCTDYADIDEEVNLLLKA----------------VNPDMRFITWSLTG 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHM-----------AQNMLMTL-GIVSILTADVDTAIK 315
           +++  + ++ G  + +     G+              +N++  L  ++S+ T        
Sbjct: 251 QKATYQGRIAGNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCLVTMLSLRTWSAAELQS 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P   R ++     N     LID+SYN +   ++ A+  L+Q       RRI +L
Sbjct: 311 RLNRLRPVSMRLEQKEGINN---CELIDDSYNNDMVGLQLALRFLNQQGTR--SRRIVIL 365

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            D+ + G+    F+  +  ++    +      G  V++            ++ T + L  
Sbjct: 366 SDVLQTGQPEAEFYEQVGNLMRANEVGQFIGIG-PVVSRNKLFFADGSQFFATTEEFLAQ 424

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           F  S L D   V+VK +    F R+++ L
Sbjct: 425 FSFSELRDS-TVLVKGARPFSFERIVHRL 452


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 2/195 (1%)

Query: 27  VNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +  ISIDSR I +P   F A+KG  +DGH F+  A + GA   +V+ D         I +
Sbjct: 25  IKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQPPYPLKDIIL 84

Query: 86  FGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             V+D L A   LA A R  R++  ++AI GS GKT  K++L   L+   K  A   S+N
Sbjct: 85  LRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMASPESFN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL+L ++    +  + E   S  GE+  L  ++ P   ++T+I   HL     +E
Sbjct: 145 SQIGVPLSLFKIKDSHEIALVEAAFSEPGEMEVLADIIMPEHVILTSIGAKHLHTLGSLE 204

Query: 205 EIASAKAEIFEGLEK 219
             A    ++ + L+K
Sbjct: 205 TTALEMVKLLQPLKK 219


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 211/455 (46%), Gaps = 37/455 (8%)

Query: 27  VNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVAS--IGSLS 82
           ++ + IDSRS I P+ + F       DGH++I  A   G    V+  T+ +A    G  +
Sbjct: 28  ISRLVIDSRSMIDPENSLFFALSAKRDGHEYIPDAYAHGIRNFVISRTEFLADQKAGDYA 87

Query: 83  IPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              F  VDDVL AL +LAV  R +    ++AITGS GKT  KE L   L++         
Sbjct: 88  DANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNGKTIVKEWLYQLLAADFNIVRSPR 147

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           S+N+ IGVPL++  +  +    IFE G+S   E+  L  ++ P + ++T +  AH   FS
Sbjct: 148 SFNSQIGVPLSVWDLTEEHTLAIFEAGISKGEEMDALAAIIYPTVGILTNVGEAHAEGFS 207

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
                   K      L K   +F+ Y   + + +  K   L   T +S+  +++AD Q+ 
Sbjct: 208 S----QKEKLLEKLKLFKEADVFI-YSPEYTQGIPKKD--LPGNTKFSWSLTESADLQIS 260

Query: 262 KWKQCSEQSWMEVQLQGKSMEV---------VHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             +   +++++    +G+ +E          V +GI   +    L+++G       D D+
Sbjct: 261 FIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGI---ICWATLLSMGYSP---EDADS 314

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++ L+    + G     +  +NQ   ++ID+SY+A+ +S+  A+  L+  + H   ++ 
Sbjct: 315 RLEKLN----RVGMRLELKHGINQ--CSVIDDSYSADISSLAIALDFLNLQNQH--PKKT 366

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +L D+ E G   +  + ++A +L    I+ +   G ++ A            YS T D 
Sbjct: 367 LILSDLYETGRKDEELYTEIAALLKQKQINRLIGVGPNISASASQFKLE-SSFYSSTQDF 425

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  F      D + +++K +    F R+  L+ ++
Sbjct: 426 IDQFPAIHFND-ETILLKGARRFEFERISKLITQK 459


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 194/461 (42%), Gaps = 50/461 (10%)

Query: 30  ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84
           I  DSRS+  P+E  FFA+K    DGH +IL    +G    VV T++ A+  S   P   
Sbjct: 27  ILTDSRSLCFPEETLFFALKSGRNDGHRYILELYHRGVRNFVV-TEVPANYAS-DYPQAN 84

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V D L +L +LA   R      I+ ITGS GKT  KE L   LS          SYN
Sbjct: 85  FLKVVDSLESLQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLSDDLFVTRSPRSYN 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + +GVPL++  +      G+FE G+S  GE+  L  +++P IAV+T +  AH  NF   E
Sbjct: 145 SQVGVPLSVWLLNEHSQVGVFEAGISQPGEMLVLRDIIQPTIAVLTNLGDAHQENFVSRE 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                K  +F   +    +  N DDS              + +Y      NA F ++   
Sbjct: 205 AKCKEKLVLFHDAK---IVVYNGDDSLISDCVNALEDFRGERLYWSCSDHNAPFFVKS-- 259

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  +E +    ++  ++ GI    +   +    I +        A  AL++   K+
Sbjct: 260 -------IEKKATATTITYIYKGIESWYSLPFIDDASITNSFAC----AAVALTLGVSKD 308

Query: 325 GRGKR--------YRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              +R         R  + QG    TLI++SYN++  S+  A+  +++   H   R   +
Sbjct: 309 ALDERMLQLEPIAMRLEVKQGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRRHTLI 368

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           L D+ + G  ++  + ++ ++     I      G  + +         H       D  F
Sbjct: 369 LSDIYQSGMTTEELYKEVGKLCQQRGIEKFIGVGKELQS---------HAGLITIKDKFF 419

Query: 435 LFIQSSLVDGD--------VVVVKSSNSCGFYRLINLLLEE 467
                +L++ D        V+++K +   GF +L  LL+++
Sbjct: 420 FENVENLIESDVFKQLHDEVILIKGARRFGFDQLTELLVQK 460


>gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 292

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 26/279 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR++ P + F A+KG  +D HDF+     +GA   +V+     +   L++P     
Sbjct: 29  VSTDSRTVGPGDLFVALKGERFDAHDFLADVAARGAAAALVSH----TPAGLAMPTIEGG 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           +   AL  LA   R R    ++A+TGS GKTT KEM+     A        A  G+ NN 
Sbjct: 85  ETRAALGALAHGWRKRFPLPVVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLNND 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLTL R+       + ELGM+H GE   L  L  P +A++      H    + +E +
Sbjct: 145 VGLPLTLLRLNAAHRLAVIELGMNHPGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A   A +   L   G      DD++           GI  + + G ++  DF L   ++ 
Sbjct: 205 ALEHAAVIHALAPDGVAVFPADDAY----------AGIWRVAATG-NRIVDFALDDGERH 253

Query: 267 SEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++           + +     S+ V    +G H A+N L
Sbjct: 254 TDAQVTGRVDGGALAIDTPAGSITVRLRALGAHNARNAL 292


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 31/389 (7%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSL 81
           V  I  DSRS+  P++  FFA++    DGH +I    ++G    VV+    DM +   + 
Sbjct: 24  VRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRLPEDMTSCPDAN 83

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + V      L AL +LA   R      ++ ITGS GKT  KE L   LS  ++      
Sbjct: 84  FLQVVSP---LKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQLLSPERRVTRSPR 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           SYN+ IGVPL++  +    + G+FE G+S  GE+  L  +++P I V T +  AH  NF+
Sbjct: 141 SYNSQIGVPLSVWNLNEKSEVGLFEAGISEPGEMEALQSVIQPTIGVFTCLGDAHQENFT 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E+    K ++F+  +    +  + DD+       +S   G    +S  + ++    + 
Sbjct: 201 SYEQKCMEKLKLFKDAK---VLVYDMDDACVAGCVNRSAFKGEYFAWS-RQQRDVPLYIA 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             ++   ++ +    +GK        I      N +  L +   L    +T    ++V  
Sbjct: 257 SVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAVCLHLGMSPETIAARMAVLE 316

Query: 322 P-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR-RIA 373
           P       KEGR     C       TLI++SYN++  S+  A+  +++  P   GR R  
Sbjct: 317 PVAMRLEVKEGRSG---C-------TLINDSYNSDYNSLDIALDFMNR-RPDCAGRKRTL 365

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           VL D+ + G   +  +  +A ++++  + 
Sbjct: 366 VLSDIEQAGGAPEDLYGRVARLVAMRGVE 394


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 22/382 (5%)

Query: 31  SIDSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           + DSR I +P+   F AIK    +G  +I  AV+KG  L+V       ++ +  +    V
Sbjct: 28  AFDSRIIYSPKNTGFVAIKTKKNNGEKYIASAVEKGIELIVSEH---KTLDNEHLSWLIV 84

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD +  L KLA           I ITGS GKT  KE L   LS   +      S+N+ IG
Sbjct: 85  DDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKSPKSFNSQIG 144

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +PL+L  +  +   GIFE+G+S   E+  L  +  P I V+T I  AH+SNF   + +  
Sbjct: 145 LPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHISNFKSEKHLVD 204

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQL-RKWKQC 266
            K  +F+  E   +I  N D+    L+  K + L   K + S+G +K+ +  +   WK  
Sbjct: 205 EKISLFKDSE---SIIFNGDNI---LVSNKINTLYSSKNLISYGFNKDNNIHISSNWK-- 256

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q  + VQ   KS              N+L  + ++ +L    +  I+ ++     E R
Sbjct: 257 DRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEMR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N     +I++S+N +  S+K A      I  + + ++  ++ D  E  + + 
Sbjct: 317 LESVNGIKNN---LIINDSFNLDLDSLKIAFEF---IKSYQKPKKSLIITDFTEKSD-AD 369

Query: 387 SFHIDLAEVLSLYNISHVWLSG 408
           + + ++A +++  N + V+L G
Sbjct: 370 NLYQEVASLINEQNFNKVFLIG 391


>gi|289758277|ref|ZP_06517655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
 gi|289713841|gb|EFD77853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
          Length = 364

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 154/371 (41%), Gaps = 52/371 (14%)

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+ + +  A  GS+NN +G P T+ R     D+ I E+   H G I  L  +  P I V+
Sbjct: 5   LAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVV 64

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +  AHL  F   E IA  KAE+ + +  +G + LN DD     + AK   L    +  
Sbjct: 65  LNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVR 120

Query: 250 FGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVS 304
             +    D     W       E +     L     +  V  G+ G H   N L    +  
Sbjct: 121 VSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVAL 176

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+
Sbjct: 177 ECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIA 234

Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             P    R  AVLG+M E+GE + + H  +  +    ++S + + G           RSI
Sbjct: 235 HQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSI 285

Query: 423 H-VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCG 456
             +H+   ++G +   +++                         L  GDVV+VK+SN+ G
Sbjct: 286 SAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAG 345

Query: 457 FYRLINLLLEE 467
              + + L+ +
Sbjct: 346 LGAVADALVAD 356


>gi|218678972|ref|ZP_03526869.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli CIAT 894]
          Length = 117

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 68/103 (66%)

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
           G GRRIAVLGDM EMGE +Q  H DLA  L    I HVWL+G  + ALK++LP S+HV Y
Sbjct: 6   GRGRRIAVLGDMLEMGEYAQKVHSDLAVPLLAAGIEHVWLAGAEMAALKESLPESVHVEY 65

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            E    L  ++  S+V GDV +VKSS   GF +++  LL++FP
Sbjct: 66  RENTSELTDYVLDSVVPGDVFMVKSSLGIGFGKIVAALLDKFP 108


>gi|306820503|ref|ZP_07454136.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551417|gb|EFM39375.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 520

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 145/311 (46%), Gaps = 26/311 (8%)

Query: 96  NKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           NK    AR +       T+I +TGS GKTT K++L   L           +YN  +GV +
Sbjct: 162 NKFINEARQKISSMQNLTVIGVTGSYGKTTVKQILGKLLGKDFNVLITPYNYNTTLGVTI 221

Query: 152 TLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+     P+  D  + E+G   +GEI+ +  +V P   VIT+I   HL  F  ++ I   
Sbjct: 222 TIREYLSPLH-DVFVCEMGAKGVGEIKEICDIVNPKYGVITSIGEQHLETFLSVDNIIKT 280

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSE 268
           K E+ + +   G +FLNYD+   E+++ K      K I S+  + KNADF     K    
Sbjct: 281 KFELADAVPDDGIVFLNYDN---EIIRNKKVD---KNIVSYAVNYKNADFVPYDIKVDEN 334

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S   + + G+ ++     IG H   N+   + +   L     T ++ +      E R +
Sbjct: 335 GSIFYLDIDGEKVKFETKIIGLHNVLNIAGCIAVAYKLGVTRQTLVQRVRQIEQVEHRQQ 394

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE----L 384
                + + F  +ID++YN+NP+  K+A+  LS      +  +I +   M E+GE    L
Sbjct: 395 ----VIKKNFGIIIDDAYNSNPSGAKSALDTLSMF----DMLKIVITPGMVELGEKQSSL 446

Query: 385 SQSFHIDLAEV 395
           ++ F   +A+V
Sbjct: 447 NREFGRQIAKV 457


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 181/386 (46%), Gaps = 23/386 (5%)

Query: 27  VNGISIDSRSI-AP-QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           V G++ DSR+I +P   AF AI      G  +I  A++KG   VV++   + S   ++  
Sbjct: 24  VTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYITSAIEKGIS-VVISQHRIESETDVTWI 82

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  V+D L  + KLA    A+   K TI  ITGS GKT  KE L  +L     T     S
Sbjct: 83  I--VEDSLKFIQKLAKYHFAQFTLKTTI-GITGSNGKTIVKEWLYQSLFDEFITVKSPKS 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ +G+PL+L ++    + GIFE+G+S   E+  L  + +P I V+T I PAH SNF  
Sbjct: 140 FNSQLGLPLSLLKVSARDEIGIFEVGISKPSEMERLADIFKPQIGVLTHIGPAHESNFEN 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            +++   K ++F     +  I  N D+     L  + ++   K + S+G   + D  +  
Sbjct: 200 QKQLIEEKIKLFSD---SDVILFNGDNLLVHSLITERYSS--KKLISYGFETHNDIFI-- 252

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K   ++  + +   G+   +           N L  + ++ +L    D   + +++  P
Sbjct: 253 -KSSPKEGDLSIVYFGEEFNLPAQRRDEATLNNALCVIAVLKVLGFSTDIIREKINMLKP 311

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E R +  +   N     +I++ YN +  S+K A   +++   + +  +  VL D  E G
Sbjct: 312 VEMRLESVKGLRNN---LIINDYYNLDLDSLKIAFQFINE---YNKPAKTLVLTDFVE-G 364

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
           + +   +  ++ + +     HV+L G
Sbjct: 365 KETTLLYQTVSNLTNQQKFQHVFLIG 390


>gi|114330911|ref|YP_747133.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307925|gb|ABI59168.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 617

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 179/387 (46%), Gaps = 43/387 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD- 161
           RLR   + I ITGS GKTTTK++  + LS     Y    SY + + V    A   ++V+ 
Sbjct: 29  RLRH-TSFIGITGSAGKTTTKDLCYLILSGF---YPVAQSYKS-LNVVKATADFVLEVES 83

Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG--IEEIASAKAEIFEG 216
              F I E+  +  G +     LV+P IAV+T I   H   F G  ++ IA  KA++ E 
Sbjct: 84  KHRFSIIEMSGNRPGALDLPLWLVKPEIAVLTNIEKDHFRAFKGESVDGIAREKAKLIEA 143

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQ 275
           L + GT  LN DD   +++  +  A   K I+  GKSK A  +L        Q   + ++
Sbjct: 144 LSENGTAVLNMDDPRVKVIGERCKA---KVIW-VGKSKGATLRLLNATSSYPQPLTLTIK 199

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +G + EV+    G ++A ++L  LG+       +D AI  L++  P EGR +     + 
Sbjct: 200 YEGITHEVITGLHGTYLATSVLCALGVALAAGIRLDQAIPRLALAVPVEGRMQ--PVVMG 257

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-GELSQSFHIDLAE 394
            G  T I +   A   S+   +  LS+ +     R+IAV+G + +  G+ S  +     +
Sbjct: 258 DG-VTFIRDDMKAPAWSLPMVLDFLSEATAV---RKIAVVGSISDFSGDRSDKYKQFARQ 313

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL--FL-------FIQSSLVDGD 445
           VL   ++         V+ + D   R++     E    L  FL       F+Q +L  GD
Sbjct: 314 VLQHADM---------VIFVGDNAHRALRARKDENDSALQGFLTLKEASSFLQKTLRPGD 364

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           +V++K SN      L  L+L+ +  IQ
Sbjct: 365 LVLLKGSNKSD--HLQRLILDRYKPIQ 389


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 197/474 (41%), Gaps = 16/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFIL 58
           M+ L    + L+ IQ H +   P   +  I  DSR + +P ++ FFA++    DGH +I 
Sbjct: 9   MSTLQNILEYLRPIQTHLVDERP---IRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIP 65

Query: 59  HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + G     +   +   +       +  V + L AL ++A   R+R    +I ITGS 
Sbjct: 66  QLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSN 125

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  
Sbjct: 126 GKTVVKEFLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLR 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  ++RP + ++T I  AH  NF  + +    K ++F   +        YD    E+ + 
Sbjct: 186 LQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADH-----FVYDADSDEIQRG 240

Query: 238 KSH-ALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +  L  K I +S    K A + +         + + VQ   +S  V          QN
Sbjct: 241 IDNLGLSDKAIGWSLTPGK-AYYHVSYSHSGDGTTIITVQHADESSTVTIPFADQASIQN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L ++ +L          L+ F   E    R      Q    LI+++YN +  S++ 
Sbjct: 300 ATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRI 359

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+    Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  +   +
Sbjct: 360 ALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQ 419

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           D   RS      + ET D L        +    ++VK +    F R++  L ++
Sbjct: 420 DYFQRSGEGKTAFYETTDQLLADDLLGTITHAEILVKGARQFQFERIVQHLAKQ 473


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 169/395 (42%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSI----- 83
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    +  G L +     
Sbjct: 30  DSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQ 89

Query: 84  -----PVFG----------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                P             V + L AL KLA   R + K  +I ITGS GKT  KE L  
Sbjct: 90  HDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQ 149

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N L  L     L  
Sbjct: 267 SRTDIERPLYISRVTKK-EDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 325

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 169/395 (42%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSI----- 83
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    +  G L +     
Sbjct: 30  DSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQ 89

Query: 84  -----PVFG----------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                P             V + L AL KLA   R + K  +I ITGS GKT  KE L  
Sbjct: 90  HDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQ 149

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N L  L     L  
Sbjct: 267 SRTDIERPLYISRVTKK-EDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 325

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 169/395 (42%), Gaps = 45/395 (11%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSI----- 83
           DSRS++ P+E  FFA+      G  +I     +G    V+  +    +  G L +     
Sbjct: 30  DSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQ 89

Query: 84  -----PVFG----------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                P             V + L AL KLA   R + K  +I ITGS GKT  KE L  
Sbjct: 90  HDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQ 149

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I +
Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AH  NF  ++E    K  +F+  +    +  N D+       AKS     +  +
Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    +   +  R  K+  + + +  +            I     +N L  L     L  
Sbjct: 267 SRTDIERPLYISRVTKK-EDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 325

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             D   + ++   P       KEG+     C        LI++SYN++ AS+  A+  L 
Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410


>gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp.
           P1]
          Length = 352

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 113/258 (43%), Gaps = 32/258 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR   P   F A+ G   DGHDF   AV +GA  V+    + A   ++  P  
Sbjct: 70  VTAVEFDSRKAGPGALFLALPGERADGHDFAAGAVTRGATGVLAGRPVDAP--AVVAPPA 127

Query: 87  GVDD----------------VLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTI 128
            V D                VL AL +LA  V   L   A ++ +TGS GKT+TK++L  
Sbjct: 128 EVRDAHTYLGSVDPDGHGAAVLAALGRLARHVLGALPGLA-VVGVTGSAGKTSTKDLLAA 186

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+   +T A   S+NN +G P T  R        + E      G I  L  +  P I V
Sbjct: 187 VLAPQGRTVAPPESFNNELGTPWTALRADAATRHLVLEFSARGAGHIAALCAVAPPRIGV 246

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLE-------KTGTIFLNYDDSFFELLKAKSHA 241
           +  +  AHL  F     IA+AK E+ E L        + G   LN DD     +++++ A
Sbjct: 247 VLNVGSAHLGEFGSRAGIAAAKGELVEALPPGDLPGGRGGVAVLNADDELVLAMRSRTPA 306

Query: 242 LGIKTIYSFGKSKNADFQ 259
                + +FG+S  AD +
Sbjct: 307 ----RVVTFGRSACADVR 320


>gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 630

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 158/379 (41%), Gaps = 32/379 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++   I ITGS GKTTTKE+  + LS          S N  I V  T+        F I 
Sbjct: 37  TQTQFIGITGSAGKTTTKELCNLILSGSYSVMTTPQSLNTPIIVAETMLATEKKHKFCIM 96

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTI 223
           ELG    G +     L RP I V+T I   H   F   G++ IA  KA++ E L K GT 
Sbjct: 97  ELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAVEKAKLIEALSKNGTA 156

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSME 282
            LN DD   + +  +  A   + I+  GK+  +  +L K   +  E   + V  QGK  E
Sbjct: 157 ILNMDDPRVKAIGERCKA---RVIW-VGKNPESTIRLCKVTSRWPEPLKLTVTYQGKLYE 212

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  H  G  +A ++L  LG+       ++ AI  L    P  G   R +    +   T I
Sbjct: 213 VPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAG---RMQIVTGEDDVTFI 269

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +   A   S+ A    L +       R+IAV+G + +    S   +   A  L  Y   
Sbjct: 270 RDDMKAPYWSLLAPFKFLKEADAL---RKIAVVGSISDFSGDSTMIYKRCARELREY--- 323

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE---TMDGLFL------FIQSSLVDGDVVVVKSSN 453
                   V+ + D   R++     E   T+ G         F+Q +L  GD+V++K SN
Sbjct: 324 -----ADMVIFVGDNAHRALRARKDENDSTLQGFLTLKEASSFLQKTLRPGDLVLLKGSN 378

Query: 454 SCGFYRLINLLLEEFPAIQ 472
                 L  L+L+ +  IQ
Sbjct: 379 KSD--HLQRLILDRYKPIQ 395


>gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
 gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
          Length = 514

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 53/377 (14%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L+ + +  A  GS+NN +G P T+ R     D+ I E+   H G I  L  +  P
Sbjct: 149 LMPAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPP 208

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V+  +  AHL  F   E IA  KAE+ + +  +G + LN DD     + AK   L  
Sbjct: 209 SIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTA 264

Query: 245 KTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLM 298
             +    +    D     W    S +   +  L          G        H   N L 
Sbjct: 265 ARVVRVSRDNTGDV----WAGPVSLERIGQAALYAACPRCPSRGPDSGSAATHQVTNALC 320

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +     A V+    AL+   P      R +        T+ID++YNANP SM+A + 
Sbjct: 321 AAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQ 378

Query: 359 VLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S + + G        
Sbjct: 379 ALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG------ 432

Query: 417 ALPRSIH-VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVK 450
              RSI  +H+   ++G +   +++                         L  GDVV+VK
Sbjct: 433 ---RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVK 489

Query: 451 SSNSCGFYRLINLLLEE 467
           +SN+ G   + + L+ +
Sbjct: 490 ASNAAGLGAVADALVAD 506


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 196/483 (40%), Gaps = 34/483 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFIL 58
           M+ L    + L+ IQ H +   P   +  I  DSR + +P ++ FFA++    DGH +I 
Sbjct: 1   MSTLQNILEYLRPIQTHLVDERP---IRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + G     +   +   +       +  V + L AL ++A   R+R    +I ITGS 
Sbjct: 58  QLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  
Sbjct: 118 GKTVVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEYTLAIFEAGISMPMEMLR 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  ++RP + ++T I  AH  NF  + +    K ++F   +        YD    E+ + 
Sbjct: 178 LQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADH-----FVYDADSDEIQRG 232

Query: 238 ------KSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                    A+G      K  Y    S + D        C+  + +  Q   +S  V   
Sbjct: 233 IDNLGLSDKAIGWSLTPGKAYYHVSYSHSGD--------CT--TTITAQHADESSTVTIP 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  QN    L ++ +L          L+ F   E    R      Q    LI+++Y
Sbjct: 283 FADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAY 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           N +  S++ A+    Q +     + + +L D+ +  +L +  +  + E+++ Y  +    
Sbjct: 343 NNDINSLRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIG 402

Query: 407 SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G  +   +D   RS      + ET D L        +    ++VK +    F R++  L
Sbjct: 403 VGRELCNYQDYFQRSGEGKTAFYETTDQLLADDLLGTISQAEILVKGARQFQFERIVQHL 462

Query: 465 LEE 467
            ++
Sbjct: 463 AKQ 465


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 25/326 (7%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + L AL KLA A R   K  +I ITGS GKT  KE L   LS  +       SYN+ I
Sbjct: 36  VANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQI 95

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++ ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E  
Sbjct: 96  GVPLSVWQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKC 155

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  +F+  +    +  N D+       AKS     +  +S    K+ +  L   K   
Sbjct: 156 MEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAWS---CKDIERPLYISKVTK 209

Query: 268 EQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP--- 322
           ++    +  +   M+ +     I     +N L  L     L    D   + ++   P   
Sbjct: 210 KEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAM 269

Query: 323 ----KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
               KEG+     C        LI++SYN++ AS+  A+  L + S     +R  +L D+
Sbjct: 270 RLEVKEGKNN---C-------ILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDI 319

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHV 404
            E G+ + + +  +A+++    I+ +
Sbjct: 320 LETGQSTATLYRRVAQLIKSRGINKL 345


>gi|317129523|ref|YP_004095805.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474471|gb|ADU31074.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 368

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 162/356 (45%), Gaps = 17/356 (4%)

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + +TGS GK++T   +    ++  K      G+ N        +++   +    + E+G 
Sbjct: 11  VGVTGSAGKSSTTSFINAIFNTRWKNVLTTKGNMNLPKHTKQAVSQFNRNHKAIVLEMG- 69

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             LG      + ++P+I VIT +  AH     + I+E A AK+ +   +   G + LN D
Sbjct: 70  --LGRASNHFNYIQPNIGVITNVGTAHYGKLGNSIKETAKAKSAMIRNIHPRGILLLNND 127

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  +LL  K+       +   G +  +++Q    K  S      V L+GK +       
Sbjct: 128 DTNSKLLDYKNFK---GDLIRVGITSKSEYQATNIKYTSYGMIFGVTLRGKKVYFFIPAF 184

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + I   L   ++     L        R    + +  +G   LID+++NA
Sbjct: 185 GMHNVINALFAIAIADRLNFSINEMKLGLRSCKSPSRRVNVIKLSKPKGAL-LIDDTFNA 243

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S+KAA+ VL+++    + ++IAVLG M E+G+ S+  H ++   L+   I HV+L G
Sbjct: 244 NPQSVKAAVDVLAELG--NKKKKIAVLGSMLELGDYSKKGHQEVGAYLAKKGIKHVFLYG 301

Query: 409 -----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                    A+++ +P   ++ ++   D L   I   L +G VV++K S+     R
Sbjct: 302 KNASYVKTAAIENGIPEK-NILHTTNRDKLHYGILRVLNEGCVVLIKGSHKMKMSR 356


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 173/389 (44%), Gaps = 31/389 (7%)

Query: 27  VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSL 81
           V  I  DSRS+  P++  FFA++    DGH +I    ++G    VV+    DM +   + 
Sbjct: 24  VRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRLPEDMTSCPDAN 83

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + V      L AL +LA   R      ++ ITGS GKT  KE L   LS  K       
Sbjct: 84  FLQVVSP---LKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQLLSPEKNVTRSPR 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           SYN+ IGVPL++  +    + G+FE G+S  GE+  L  +++P I V T +  AH  NF+
Sbjct: 141 SYNSQIGVPLSVWNLDERSEVGLFEAGISEPGEMEALQSVIQPTIGVFTCLGDAHQENFT 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E+    K ++F   +    +  + DD+       +S   G    +S  + ++    + 
Sbjct: 201 SYEQKCLEKLKLF---KDAKVLVYDMDDARVVGCVNRSAFKGEYFAWS-RQRRDVPLYIA 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             ++   ++ +    +GK        I      N +  L +   L    +T    ++V  
Sbjct: 257 SVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAVCLHLGMSPETIAARMAVLE 316

Query: 322 P-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR-RIA 373
           P       KEGR     C       TLI++SYN++  S+  A+  +++  P   GR R  
Sbjct: 317 PVAMRLEVKEGRSG---C-------TLINDSYNSDYNSLDIALDFMNR-RPDCAGRKRTL 365

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +L D+ + G   +  +  +A ++++  + 
Sbjct: 366 ILSDIEQAGGAPEDLYGRVARLVAMRGVE 394


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 197/461 (42%), Gaps = 45/461 (9%)

Query: 30  ISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           I  DSR ++   Q  FFAIKG  +DGH F+      G    VV  +  A  G+L      
Sbjct: 18  ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVV--EEAAFTGALRETAAT 75

Query: 88  VDDV--------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            DD         + AL +L  + R +    ++ I GS GKT  KE L   LS  +   A 
Sbjct: 76  WDDAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVAS 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             SYN+ IGVPL++  +  +    IFE G+S   E+ +L  +++P I + T I PAH   
Sbjct: 136 PKSYNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYLQPVMQPTIGIFTNIGPAHDDG 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   ++  + K  +F  ++K     L Y   + E+ +  S  L         K  NA  +
Sbjct: 196 FRSRKQKITEKLRLFTKVKK-----LIYRKDYHEIDEEISLIL---------KPVNAFLE 241

Query: 260 LRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNML--------MTLGIVSILTA 308
              W      S ++V     + K++  +   +G H  +           +T  IV +L  
Sbjct: 242 TLSWGSNYSGSHVQVTFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDF 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPH 366
            ++ A+    V   K       R  L +G     +ID++YN +   +  A++ L+Q    
Sbjct: 302 GLEPAVIQERVLLLKP---VSMRLELKEGINHSYIIDDAYNNDLQGLAMALNFLAQ--QE 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              R+  +L D+ + G+     +  ++ +LS  +I  +   G  + +       +    Y
Sbjct: 357 QRNRKTVILSDVLQTGQTPTELYKMVSRLLSEKSIDRLIGIGKQISSQASLFDIAEQEFY 416

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +T   L  F   +L D  +V+VK +    F ++++ + ++
Sbjct: 417 DDTDSFLKTFAFPTLAD-TLVLVKGARPFSFEKIVHRIQQK 456


>gi|289677696|ref|ZP_06498586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 302

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 35/254 (13%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + ELG S +GEI +   L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT 
Sbjct: 5   VIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTA 64

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL----RKWKQC------SEQSWM 272
            LN +D  F + + ++   G + + +F  + + AD       R  + C      S     
Sbjct: 65  VLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTA 121

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            VQL         + +G H   N L        +   ++  +  L+   P +GR      
Sbjct: 122 RVQL---------NLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNSVQPVKGRAV---A 169

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +      +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++
Sbjct: 170 QIASNGTRVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREV 225

Query: 393 -----AEVLSLYNI 401
                 +V +LY +
Sbjct: 226 GAYAAGKVSALYAV 239


>gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
 gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 163/349 (46%), Gaps = 19/349 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELG 168
           II ITGS GKT+ K +L   ++    T     SYNN +G+ LT+ +    + +  + E+G
Sbjct: 183 IIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMGITLTIRKQLQSLHEVFLCEMG 242

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H+ EI  L   V+P  +++T I P HLS F  +E I   K +  E L K G  FLN D
Sbjct: 243 ADHVHEISALMAFVKPSWSIVTAIGPQHLSTFQTMEHIVHEKMQAIECLPKDGIGFLNID 302

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +++      ++       I ++G    AD++++      + +  ++ ++G         +
Sbjct: 303 NAWIREYPIQNTC----RIVTYGTHAAADYRIKDIVYSKQGASFKIHVKGVDYAFHTKLL 358

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+   + +   L  ++ + ++ L+   P      + R   +   +T++D++YN+
Sbjct: 359 GKHNVVNIAAGIAVAHCLGIEL-SVLQELTKHLPYVEHRLQLRPTSS---YTMLDDAYNS 414

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N      A+ VL+++    EG+ I V     ++G++ ++ H+ L + L+      V L G
Sbjct: 415 NVEGATYALEVLAKM----EGKHIVVTPGFLDLGDMEENAHVRLGKQLTQVA-DEVILVG 469

Query: 409 FH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            H     V  L+ A   S HV+  E +   F  ++       VV+ ++ 
Sbjct: 470 QHQSKHIVKGLQQAQYDSRHVYVCENIQEAFELLKQLATKDSVVLFEND 518


>gi|291557015|emb|CBL34132.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           V10Sc8a]
          Length = 511

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 30/298 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166
           T++ +TGS GKT+TK  L   L +         SYN  +GV + + R  ++    IF  E
Sbjct: 169 TVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGV-VKVVRGQLNATHEIFLCE 227

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225
           +G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L +K G IFL
Sbjct: 228 MGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGIIFL 287

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NYD+ +     AK      K  YS G     D+           +   V    +  +   
Sbjct: 288 NYDNEYI----AKHECNKNKVTYSLGGG--TDYYADNISVSENGTQFTVHNGNEEKQFTT 341

Query: 286 HGIGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TL 341
             IG H  QN++  + + + L    AD+   +K L            +R  + +G   T+
Sbjct: 342 KLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECV--------PHRLQIIKGTNKTI 393

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEV 395
           ID+++N+NP   KAA+  L+      EG +I V   M E+G    EL++ F    AE+
Sbjct: 394 IDDAFNSNPTGAKAALDTLAVF----EGFKILVSPGMVELGEKEYELNKRFGEQAAEI 447


>gi|323575264|emb|CBY88822.1| hypothetical protein [Staphylococcus aureus]
          Length = 348

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 18/280 (6%)

Query: 52  DGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           +G+++I    ++  GL++  T   DM         P   ++D    L KLA   RL+ K 
Sbjct: 63  EGNEYI-KKDKEDLGLIITETYVPDM-----KFKTPQLVINDSANTLTKLAEEMRLQYKH 116

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFE 166
            ++AITGS+GK++T+ +++  L   K  Y     +NN+I   V L L +M    +F + E
Sbjct: 117 PVVAITGSMGKSSTRMLISAGL---KDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++ L  +   ++L++P+IA++T I  AH+S F  I  I   KA IF+GL   G   +N
Sbjct: 174 VSLNALNAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIIN 233

Query: 227 YDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            D    ++L  +AK +   + T  +   S  A    +  +     + + +   G+     
Sbjct: 234 KDTLHSDILIERAKQNTSNVITYSTHDSS--ATICPKSIQYSKGYTVITIDFNGQKYTYR 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            + I   M +N L T   +S L   ++ A++ LS F P E
Sbjct: 292 INSISDGMVENSLATFATLSHLDIPLERALENLSTFKPFE 331


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 196/483 (40%), Gaps = 34/483 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFIL 58
           M+ L    + L+ IQ H +   P   +  I  DSR + +P ++ FFA++    DGH +I 
Sbjct: 1   MSTLQNILEYLRPIQTHLVDERP---IRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + G     +   +   +       +  V + L AL ++A   R+R    +I ITGS 
Sbjct: 58  QLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  
Sbjct: 118 GKTVVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLR 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  ++RP + ++T I  AH  NF  + +    K ++F   +        YD    E+ + 
Sbjct: 178 LQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADH-----FVYDADSDEIQRG 232

Query: 238 ------KSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                    A+G      K  Y    S + D        C+  + +  Q   +S  V   
Sbjct: 233 IDNLGLSDKAIGWSLTPGKAYYHVSYSHSGD--------CT--TTITAQHADESSTVTIP 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  QN    L ++ +L          L+ F   E    R      Q    LI+++Y
Sbjct: 283 FADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAY 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           N +  S++ A+    Q +     + + +L D+ +  +L +  +  + E+++ Y  +    
Sbjct: 343 NNDINSLRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIG 402

Query: 407 SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G  +   +D   RS      + ET D L        +    ++VK +    F R++  L
Sbjct: 403 VGRELCNYQDYFQRSGEGKTAFYETTDQLLADDLLGTISQAEILVKGARQFQFERIVQHL 462

Query: 465 LEE 467
            ++
Sbjct: 463 AKQ 465


>gi|6332754|dbj|BAA86636.1| hypothetical protein [Staphylococcus aureus]
          Length = 350

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 18/280 (6%)

Query: 52  DGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           +G+++I    ++  GL++  T   DM         P   ++D    L KLA   RL+ K 
Sbjct: 63  EGNEYI-KKDKEDLGLIITETYVPDM-----KFKTPQLVINDSANTLTKLAEEMRLQYKH 116

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFE 166
            ++AITGS+GK++T+ +++  L   K  Y     +NN+I   V L L +M    +F + E
Sbjct: 117 PVVAITGSMGKSSTRMLISAGL---KDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++ L  +   ++L++P+IA++T I  AH+S F  I  I   KA IF+GL   G   +N
Sbjct: 174 VSLNALNAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIIN 233

Query: 227 YDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            D    ++L  +AK +   + T  +   S  A    +  +     + + +   G+     
Sbjct: 234 KDTLHSDILIERAKQNTSNVITYSTHDSS--ATICPKSIQYSKGYTVITIDFNGQKYTYR 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            + I   M +N L T   +S L   ++ A++ LS F P E
Sbjct: 292 INSISDGMVENSLATFATLSHLDIPLERALENLSTFKPFE 331


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 112/494 (22%), Positives = 202/494 (40%), Gaps = 60/494 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62
           +    + Q+I    +G   +  ++ +  DSRS++ P+E  FFA+      G  +I     
Sbjct: 3   YAIESIAQSIGARRVGEY-EVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYD 61

Query: 63  KGAGLVVVNTDMVASI--GSLSI----------PVFG----------------VDDVLGA 94
           +G    V++ +    +  G L I          P+                  V + L A
Sbjct: 62  RGVRNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKA 121

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L KLA   R R    +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ 
Sbjct: 122 LQKLAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVW 181

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F
Sbjct: 182 QLSEEAELGIFEAGISEMGEMGALKRMIKPSIGILTNIGGAHQENFFSLQEKCMEKLTLF 241

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  +    +  + D+       AKS     +  +S       D +   +  C  +     
Sbjct: 242 KDCD---VVIYDGDNELISNCVAKSMLTAREIAWS-----RTDIERPLYISCVTKKEDHT 293

Query: 275 QLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------K 323
            +  + + + +      I     +N+L  L     L    D   + ++   P       K
Sbjct: 294 VIAYRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVK 353

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           EG+     C        LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+
Sbjct: 354 EGKNN---C-------LLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQ 403

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            + + +  +A+++    I  +   G  + +        I  ++    + L        + 
Sbjct: 404 STATLYRRVAQLVQSRGIDKLIGVGPEISSCAARFDDGIERYFFPNTEALLKSELLKSLH 463

Query: 444 GDVVVVKSSNSCGF 457
            +V+++K S    F
Sbjct: 464 SEVILIKGSRVFNF 477


>gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Oceanithermus profundus DSM 14977]
 gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oceanithermus profundus DSM 14977]
          Length = 417

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 159/365 (43%), Gaps = 42/365 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++ P  AF A+ G    G  +   A+ +GA LV+        +         VDD  
Sbjct: 24  DSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVIGPQARDRGLQ--------VDDPY 75

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL +L    R      +  ++GSVGKT+TKE L  AL       A  G+ N    +   
Sbjct: 76  RALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALARALD----WPATEGNLNTPPALTRF 131

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  D +  + ELG+   GE+  L  L  P + V+T IAP HL     +E +A  K +
Sbjct: 132 FWHLSPDAEGAVVELGIDRPGEMDELLELTAPDLGVLTAIAPVHLEGLGSLEAVAREKLK 191

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQ 269
           +         + L + D     L+      G +T Y F  + N      +L     C+E 
Sbjct: 192 LL----AASPLRLAHVD-----LRHWGLPEGTRT-YGFDPAANFAGEALEL----GCAE- 236

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                +  G+++ +   G G  +A    +      +L  DV  A + L    P  GR + 
Sbjct: 237 --TRFRYAGRTLRLGVLGRGAALAALAALA--AAELLGRDVRVAAERLEALKPAPGRLE- 291

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               L  G    +++SYNA+P +++AA+ VL++      G R  VLG M E+G  ++ +H
Sbjct: 292 ---PLRAGGTLWLNDSYNASPKAVEAALEVLARCP----GPRGVVLGTMRELGPEAERWH 344

Query: 390 IDLAE 394
           ++ AE
Sbjct: 345 LEAAE 349


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 161/382 (42%), Gaps = 48/382 (12%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFG 87
           DSRS+  P+E  FFA+K    DGH +I     +G    VV  + V        P      
Sbjct: 4   DSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVV--EQVPEAYETLYPQANFLR 61

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L AL +LA   R      I+ ITGS GKT  KE L   L   ++      SYN+ I
Sbjct: 62  VPHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRIVRSPRSYNSQI 121

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++  +    + GIFE G+S  GE+  L  +++P I V+T++  AH  NF  +EE  
Sbjct: 122 GVPLSVWLLNEQTEVGIFEAGISQPGEMMALRDIIQPTIGVLTSLGAAHQENFRSMEEKC 181

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+    E    ++ + +D     ++  ++  G K                 W  C 
Sbjct: 182 MEKLELMHDTE--AMVYCSDNDIVSRCIRRMNYK-GEKI---------------SWSTCD 223

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-------- 319
           +Q+   V    KS+E  H    +   +N      I  I  A ++  I   +V        
Sbjct: 224 QQAAFYV----KSVENSHITYIWKEEEN---CFDIPFIDEASIEDCITCAAVALRLGLTP 276

Query: 320 -----FHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                  PK E    R      Q    LI++SYN++  S+  A+  +++       +R  
Sbjct: 277 GDLADRMPKLEPVAMRLEVKEGQRGCILINDSYNSDINSLDIALDFMNRREEL--KKRTL 334

Query: 374 VLGDMCEMGELSQSFHIDLAEV 395
           +L DM + G   +  +  ++E+
Sbjct: 335 ILSDMFQSGLSPEKLYAQVSEL 356


>gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 495

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R + P   F A+ G  +DGHD++  A +KGA   +V+  + A     S P+  V
Sbjct: 35  GVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRPVEA-----SGPLLIV 89

Query: 89  DDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYN 144
            D   AL  LA   V  R      ++ +TG+ GKTTT+E+L + LS   ++ +    ++N
Sbjct: 90  GDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSREGRRPHTNRQNWN 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP TL          + E+G+   G++ +L+ ++   ++++T++   HL     IE
Sbjct: 150 NEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMEYLSSVLVSDVSIVTSVGEGHLETLGSIE 209

Query: 205 EIASAKAEIFEGLEKTGTIFLNYD 228
            +   K+ +   +   G I L  D
Sbjct: 210 GVWKEKSNLLNWVRPGGGIVLPLD 233



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 26/156 (16%)

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-------SPHG 367
           K L  F P  GR +  R    +G   L+D  YN+NP S++ A    +++       +  G
Sbjct: 334 KHLEKFAPLPGRMQEKRTP--EGALLLLDH-YNSNPLSLQGAFQWCTEVWKKEASLAGGG 390

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---------- 417
            G+ +AVLGDM E+GE S   H     + +    S ++  G      ++           
Sbjct: 391 PGKLLAVLGDMLELGEDSSRLHRKAGLIAAETPFSAIFYKGDFFQDFREGYLSGKGEAAR 450

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L R     YS    G+F     +L  GDVV+VK S 
Sbjct: 451 LTRLSGPPYS--GQGVF----PALRRGDVVLVKGSR 480


>gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
 gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
          Length = 529

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 29/379 (7%)

Query: 96  NKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           N+   AAR     R    I+ ITGS GKT+TK +L   L+          SYN  +GV  
Sbjct: 165 NRFLRAAREKLAQRPDLIIVGITGSYGKTSTKFILGTLLTQKFNVLVTPDSYNTPMGVCR 224

Query: 152 TL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +  R+  + +  + E+G    G+IR L  LV P I V+T + P HL  F  +E +A  K
Sbjct: 225 VVNERLKPEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAVGPVHLETFGSVEAVARTK 284

Query: 211 AEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            E+ + L   G   +NYD+ +  EL K   H      +  +G        +      SE+
Sbjct: 285 YELIKSLPPDGLAVMNYDNPYCRELAKETRHV----QVEGYGLESPGARLVVSDVHVSEK 340

Query: 270 SWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               V   +  G+S       +G H   N+L  + +   L   +      +    P   R
Sbjct: 341 GTTFVLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLSLRQIAAGIGQLQPVPHR 400

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R     G   +ID+++N+NP   + A+ VLS  S    GR++ V   M E+G   +
Sbjct: 401 LQLIR----SGGVYVIDDAFNSNPTGTEVALEVLSGFS----GRKVVVTPGMVELGGEEE 452

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSS 440
            ++ +  + ++     HV L G           L   LPR   V    +++     +Q  
Sbjct: 453 RYNREFGQRMAQV-CDHVILVGPERTKPIAAGLLDGGLPRD-RVSVVTSLEEATAVLQQL 510

Query: 441 LVDGDVVVVKSSNSCGFYR 459
           L  GD V+ ++     + R
Sbjct: 511 LRPGDAVLFENDLPDNYSR 529


>gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
 gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
          Length = 523

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 136/285 (47%), Gaps = 30/285 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELG 168
           I ITGS GKT+TK ++   +     T     SYN  +G+ +T+  +  P+   F + E+G
Sbjct: 181 IGITGSYGKTSTKNVMQAMIGEQFNTLMTPASYNTPMGITITIRTLLKPIHKVF-VCEMG 239

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H+GEI  L   V+P I V+T+I P HL+ F   E I   K ++ E L K G   LNYD
Sbjct: 240 ADHVGEITNLMKFVQPSIGVVTSIGPQHLATFGSQENIIKEKMQMMELLPKDGLGVLNYD 299

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           + F    + K+    +KT+ S+G KS++ D+         + ++  +   G S  VVH  
Sbjct: 300 NDFIRNYRLKNL---VKTV-SYGVKSRDVDY------YADDITYTRM---GSSFTVVHRD 346

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------YRCALNQ-GFFT 340
               +   +L  L I++IL+A      + L+V  P   R  +      +R  L     + 
Sbjct: 347 EHVRIETKLLGELNILNILSA--ICVARHLNVPWPTIQRAAKTMKQVEHRLELKTINGYR 404

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            ID+++N+NP     A+ VLS +       R  V   M ++G + 
Sbjct: 405 FIDDAFNSNPVGSAMALEVLSMMP----NTRYVVTPGMIDLGAIQ 445


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 183/402 (45%), Gaps = 16/402 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAV 61
           ++ F +L + +   ++ IV    +  +  DSR+++      FFA++    DGH +I    
Sbjct: 1   MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60

Query: 62  QKGAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            KG    V++    D++  +   +     V   L AL ++A   R      +I ITGS G
Sbjct: 61  DKGVRSFVISDPSKDLMEKMPQANW--MRVAHPLDALQRIAALRRSMFDIPVIGITGSNG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L    +      SYN+ IGVPL++ +M  +   GIFE G+S +GE+  L
Sbjct: 119 KTIVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++ P   +IT I  AH  NF  I+     K  +F       TI  N D    E+  A 
Sbjct: 179 ESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF---PHCHTIVYNGDCE--EIAAAI 233

Query: 239 SHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           S     +   S+ ++K  A   + + +    ++ ++ +  GK   +V         ++++
Sbjct: 234 SFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDII 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + ++S+L  +V +A K  +   P E R +    A + G  T+I++ Y+ +  S+  A+
Sbjct: 294 HCITLISVLCPEVLSARKRFASLEPVEMRMEVK--AGDHG-NTIINDVYSNDVYSLTLAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
               + +     +++ +L D+ + G   +  +  +A  L +Y
Sbjct: 351 DFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVY 392


>gi|304440571|ref|ZP_07400457.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370947|gb|EFM24567.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 510

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 24/287 (8%)

Query: 103 RLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           RL++++   +I ITGS GKT+ K   +  L    +      SYN  +G+   +    +D 
Sbjct: 154 RLKAESGLKVIGITGSFGKTSVKFFTSTMLDEKFRVQNTPSSYNTPMGLSKVINN-ELDS 212

Query: 161 DFGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              IF  ELG    GEI  +  LV+P I VIT I P H+  +  IE I   K E+ E L+
Sbjct: 213 SREIFLAELGAYKPGEIHEVASLVQPDIGVITAIGPTHMQMYKTIENIMKTKYELIEDLD 272

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQL 276
           + GT   NYD+ +   L  K+    I+  Y        D+  +   + SE+  ++  V  
Sbjct: 273 ENGTAIFNYDNKYVRELADKTTKKTIR--YGTKDFMKLDYYAKDI-EVSERGSTFTLVSK 329

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKAL-SVFHPKEGRGKRYRC 332
           +  S+E     +G H  QN+L ++ I   + +   +V   I+ + SV H       R   
Sbjct: 330 EKGSIECTTKLLGEHSVQNLLASVAIGMELGMSLEEVKDRIEKIESVEH-------RLNL 382

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
              QG   +ID+++N+NP   +AA+ VLSQ     +G++I V   M 
Sbjct: 383 IEGQGGVIVIDDAFNSNPVGFRAALKVLSQFK---DGKKIIVTPGMV 426


>gi|167750587|ref|ZP_02422714.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
 gi|167656513|gb|EDS00643.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
          Length = 511

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 30/298 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166
           T++ +TGS GKT+TK  L   L +         SYN  +GV + + R  ++    IF  E
Sbjct: 169 TVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGV-VKVVRGQLNATHEIFLCE 227

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225
           +G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L +K G IFL
Sbjct: 228 MGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGIIFL 287

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NYD+ +     AK      K  YS G     D+           +   V    +  +   
Sbjct: 288 NYDNEYI----AKHECNKNKVTYSLGGG--TDYYADNISVSENGTQFTVHNGNEEKQFAT 341

Query: 286 HGIGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TL 341
             IG H  QN++  + + + L    AD+   +K L            +R  + +G   T+
Sbjct: 342 KLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECV--------PHRLQIIKGTNKTI 393

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEV 395
           ID+++N+NP   KAA+  L+      +G +I V   M E+G    EL++ F    AE+
Sbjct: 394 IDDAFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI 447


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 21/316 (6%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + L AL KLA   R + K  +I ITGS GKT  KE L   LS  +       SYN+ I
Sbjct: 84  VPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQI 143

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL++ ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E  
Sbjct: 144 GVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKC 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  +F+  +    +  N D+       AKS     +  +S    +   +  R  K+  
Sbjct: 204 MEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKK-E 259

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP----- 322
           + + +  +            I     +N L  L     L    D   + ++   P     
Sbjct: 260 DHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRL 319

Query: 323 --KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             KEG+     C        LI++SYN++ AS+  A+  L + S     +R  +L D+ E
Sbjct: 320 EVKEGKNN---C-------VLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILE 369

Query: 381 MGELSQSFHIDLAEVL 396
            G+ + + +  +A+++
Sbjct: 370 TGQSTATLYRRVAQLV 385


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 149/354 (42%), Gaps = 11/354 (3%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88
           DSRS+  P+E  FFA+K    DGH +I    ++G    VV T++ A   +         V
Sbjct: 30  DSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVV-TEVPADYATEYAEANFLKV 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL +LA   R      I+ ITGS GKT  KE L   L           SYN+ +G
Sbjct: 89  VDSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFITRSPRSYNSQVG 148

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  +      GIFE G+S  GE+  L  +++P IAV+T +  AH  NF   E    
Sbjct: 149 VPLSVWLLNEHTQVGIFEAGISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCK 208

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K  +F   +   T+  N DD        +      + ++   K K A F ++  ++   
Sbjct: 209 EKLILFHDAK---TVVYNGDDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKET 265

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            + +    +G         I      N      +   L   VD   + +    P      
Sbjct: 266 ATTVTYIYKGNESWYSLPFIDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPI---AM 322

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           R      Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + G
Sbjct: 323 RLEVKQGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRRHTLILSDIYQSG 376


>gi|291530205|emb|CBK95790.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           70/3]
          Length = 511

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 30/298 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166
           T++ +TGS GKT+TK  L   L +         SYN  +GV + + R  ++    IF  E
Sbjct: 169 TVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGV-VKVVRGQLNATHEIFLCE 227

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225
           +G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L +K G IFL
Sbjct: 228 MGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGIIFL 287

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NYD+ +     AK      K  YS G     D+           +   V    +  +   
Sbjct: 288 NYDNEYI----AKHECNKNKVTYSLGGG--TDYYADNISVSENGTQFTVHNGNEEKQFAT 341

Query: 286 HGIGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TL 341
             IG H  QN++  + + + L    AD+   +K L            +R  + +G   T+
Sbjct: 342 KLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECV--------PHRLQIIKGTNKTI 393

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEV 395
           ID+++N+NP   KAA+  L+      +G +I V   M E+G    EL++ F    AE+
Sbjct: 394 IDDAFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI 447


>gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum rubarum]
          Length = 495

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R + P   F A++G  +DGHD++  A +KGA   +V+  + A     + P+  V
Sbjct: 35  GVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEA-----TGPLLIV 89

Query: 89  DDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYN 144
            D   AL  LA   V  R      ++ +TG+ GKTTT+E+L + LS+  ++ +    ++N
Sbjct: 90  GDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSAEGRRPHTNRQNWN 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP TL          + E+G+   G++ +L+ ++    +++T++   HL     +E
Sbjct: 150 NEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMDYLSSVLVSDASIVTSVGEGHLETLGSVE 209

Query: 205 EIASAKAEIFEGLEKTGTIFLNYD 228
            +   K+ +   +   G I L  D
Sbjct: 210 GVWKEKSHLLNWVRPGGAIVLPLD 233



 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP------HGE-G 369
           L  F P  GR +  R    +G   L+D  YN+NP S++ A    +++         GE G
Sbjct: 336 LENFSPLPGRMQEKRTP--EGALLLLDH-YNSNPLSLRGAFQWCAEVWKKEATLSRGEPG 392

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + +AVLGDM E+GE S   H +   + +    S ++  G
Sbjct: 393 KLLAVLGDMLELGEDSPRLHREAGRIAAETPFSAIFYKG 431


>gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 473

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 197/455 (43%), Gaps = 29/455 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG-PHYDGHDFILHAVQKGA-GLVVVNTDMVASIGS 80
           PQ  + GI    +++ P + +F +KG P  D  + IL A+ KGA  LV+          +
Sbjct: 21  PQQKITGIMSRCKAVKPGQVYFDVKGGPGSD--ENILVALDKGAVALVISKHKKKLPFNN 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             I V  V  V  A        R +    ++ +TG+ GKTTTKEM+    S  KK +  I
Sbjct: 79  HKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTSGKTTTKEMIA---SIFKKKWGKI 135

Query: 141 GSYNNHIG----VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                ++     VP  + R+  +    +FE+GM+  G +   + +++P I +IT I  AH
Sbjct: 136 LKTEQNLNLPSFVPGHIMRLTAEHKAAVFEIGMNRRGHVAKQSRVIKPMIGIITNIGQAH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +      E +   K  I EG+ K G + +N DD     L   S     KT+  FG    A
Sbjct: 196 VGMLGSKEAVIEEKGSIIEGIPKNGYLLINADDENSGKLDLSS--FQGKTL-RFGIKNKA 252

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D+         +    +  + GK  ++     G H   N L  +   ++L  +V    + 
Sbjct: 253 DYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHNVYNALAAIAASTLLNIEVKYIKQG 312

Query: 317 LSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           L+ F     R  + R  L +G     LI+++YNANP S+ A + VL +++   +   IAV
Sbjct: 313 LAGF-----RRPKLRLQLVKGINDSLLINDTYNANPDSVIAGLEVLKELAK--DRTSIAV 365

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSET 429
           LG+M E G  +   H  +   +    I ++   G       V A K  +P      + + 
Sbjct: 366 LGNMLEQGVFTNEAHQRVGRRVQELGIDYLITIGKLARQIAVGARKHGMPEEKIKSFDQR 425

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +G F +++  +    V + K S +    +++  L
Sbjct: 426 YEGSF-YLKKHMPHRAVCLFKGSRAVYLDKMVEYL 459


>gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
 gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
          Length = 545

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSI 83
           + IDSR +     F A  G H +G+D+ L A++ GA  + +  D        A      +
Sbjct: 34  VVIDSRRVQKGSMFVAFIGEHTNGNDYALRAIEAGAACICLTQDASQDLICAAEQNGCVL 93

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                DD    L +LA   R ++    ++ ITGS GKTTTK++   AL++  + +A  G+
Sbjct: 94  LRAQNDDAETFLLRLASWWRTQNMHWIVVGITGSCGKTTTKDLCAQALATRYRVHATQGN 153

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLT+       +  + E+GM+H GE+  L+ +  P + VIT I  +H+     
Sbjct: 154 FNNLIGVPLTILSASAQDEVIVCEMGMNHPGELATLSRVALPCLCVITNIGTSHIGILGS 213

Query: 203 IEEIASAKAEIFEGLE 218
            E IA+AK EI   + 
Sbjct: 214 REAIATAKLEIITAIR 229



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 295 NMLMTLGIVSILTADVDTAIKAL---SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           + L  L I   L  D   AI+A+   S  H +     R     ++ F  +ID+SYNA+PA
Sbjct: 374 DALFALAIADELACDRSAAIRAIEACSCVHMRLEEISRP----HKPF--IIDDSYNASPA 427

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFH 410
           S+  A++VL   +  G  R IA+LG++ E+G  S   H  +    +   +   V++ G  
Sbjct: 428 SIAQALAVLHHCT--GYTRHIAILGEVGELGNQSARLHDYIGAYAAASGVDMLVFVGGED 485

Query: 411 VLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + +A  R++      +HY   +    L I   L + D V+VK+S +C
Sbjct: 486 AKRMVEA-ARTMGYPAEQLHYVRDVHEAQLRIAPLLRETDAVLVKASRAC 534


>gi|126650748|ref|ZP_01722964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592413|gb|EAZ86431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 744

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 165/374 (44%), Gaps = 25/374 (6%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           +  ++    IIAITGS GKTTTK  +   LS     +     +N           +    
Sbjct: 379 SVEVKKNLPIIAITGSAGKTTTKAFVGSILSKQWNVFESKDYWNTTEHTKKHKEEINDSH 438

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
              + E GM++ G I     +++P+I+++T I  AH+ NF G +  +A AK+E+  G+++
Sbjct: 439 QAVVLEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQ 498

Query: 220 TGTIFLNYDDS---FFEL--LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G + LN DD    F E    K K   +GIK+        +AD++    +        ++
Sbjct: 499 QGLLILNKDDDNSRFLETQQFKGKMLTVGIKS--------DADYRAYDLQYKDIGMSFKM 550

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +L G+ +E+    +G H   N L  + +   L          L+   P     +R     
Sbjct: 551 KLHGQEIELYIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPP----RRLTIYN 606

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +   T+ID++ +++P  ++AAI VL+ I+   + R++A++G M E+G L +  +  + E
Sbjct: 607 LRDDITVIDDTVHSHPQGVRAAIDVLTNIA---KKRKVAIIGQMRELGVLREEEYRKVGE 663

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +    I      GF    + +A          VH+    D L   +   +   D ++VK
Sbjct: 664 YIYEEGIDEFITYGFRTDEMSNAAIEMGMDPSRVHHFINKDALHALLDKLIKPHDTILVK 723

Query: 451 SSNSCGFYRLINLL 464
            ++    +  +  L
Sbjct: 724 GASKTNMFETVKYL 737


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 28/447 (6%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88
           DSRS+  P+E  FFA+K    DGH +I    ++G    VV T++ A   +         V
Sbjct: 62  DSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVV-TEVPADYATEYAEANFLKV 120

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            + L AL +LA   R      I+ ITGS GKT  KE L   L           SYN+ +G
Sbjct: 121 VNSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFITRSPRSYNSQVG 180

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  +      GIFE G+S  GE+  L  +++P IAV+T +  AH  NF   E    
Sbjct: 181 VPLSVWLLNEHTQVGIFEAGISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCK 240

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K  +F   +   T+  N DD        +      + ++   K K A F ++  ++   
Sbjct: 241 EKLILFHDAK---TVVYNGDDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKET 297

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            + +    +G         I      N      +   L   VD   + +    P      
Sbjct: 298 ATTVTYIYKGNESWYSLPFIDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPI---AM 354

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R      Q   TLI++SYN++  S+  A+  +++   H   R   +L D+ + G  +   
Sbjct: 355 RLEVKQGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRRHTLILSDIYQSGMTTDEL 414

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--- 445
           + ++  +     +      G  + +         H H        F      L+D D   
Sbjct: 415 YQEVGMLCQQRGVEKFIGVGKDLQS---------HAHCIGVKAKYFFESVEELIDSDVFK 465

Query: 446 -----VVVVKSSNSCGFYRLINLLLEE 467
                V+++K +   GF +L  LL+++
Sbjct: 466 QLHDEVILIKGARRFGFDQLTELLVQK 492


>gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 269

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---- 78
           P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA   +V   +  ++    
Sbjct: 23  PRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLA 82

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             L   V  V D   A+  +A   R      +IA+TGS GKTTTK ++   L+S   T A
Sbjct: 83  AELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN +GVP TL     D    + E+GM   G++  L   VRP   ++  +  +H+ 
Sbjct: 143 TAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVVNVGESHIE 202

Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLK--AKSHALGIKTI 247
                E IA AKAE+   L E TG  F+N DD + + ++  A+  A  ++T+
Sbjct: 203 LLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254


>gi|169827838|ref|YP_001697996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992326|gb|ACA39866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 162/362 (44%), Gaps = 19/362 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GKTTTK  +   LS     +     +N           +       + E GM
Sbjct: 9   IIAITGSAGKTTTKAFVGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQAVVLEYGM 68

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           ++ G I     +++P+I+++T I  AH+ NF G +  +A AK+E+  G+++ G + LN D
Sbjct: 69  AYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLLILNKD 128

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L+ +     + T+   G   +AD++    +        +++L G+ +E+    +
Sbjct: 129 DDNSRYLETQQFKGKMLTV---GIKSDADYRAYDLQYKDIGMSFKMKLHGQEIELYIPIL 185

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   L          L+   P     +R      +   T+ID++ ++
Sbjct: 186 GEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPP----RRLTIYNLRDDITVIDDTVHS 241

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  ++AAI VL+ I+   + R++A++G M E+G L +  +  + E +    I      G
Sbjct: 242 HPQGVRAAIDVLTNIA---KKRKVAIIGQMRELGVLREEEYRKVGEYIYKVGIDEFITYG 298

Query: 409 FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           F    + +A       P  +H H+    D L   +   +   D ++VK ++    +  + 
Sbjct: 299 FRTDEMSNAAIEMGMDPSKVH-HFI-NKDALHALLDKLIQPHDTILVKGASKTNMFETVK 356

Query: 463 LL 464
            L
Sbjct: 357 YL 358


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 157/354 (44%), Gaps = 28/354 (7%)

Query: 33  DSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR IA ++   FFA  G   DGH +I  A  KG    ++  D    +      +  V +
Sbjct: 31  DSRKIAHEKLGIFFAFTGRQ-DGHLYIQDAYNKGVRNFILEKDTEQEVQMPDANILWVAN 89

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
               L  LA   R R +  +I ITGS GKT  KE L   +S   K Y    SYN+ +GV 
Sbjct: 90  SWTTLQSLAQHNRSRFQGPVIGITGSNGKTIVKEWLFQLMSPEYKIYRSPKSYNSQLGVA 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L+L  +    +  I E G+SH+GE+  L  +++P   V+T I  AH   F+   E    K
Sbjct: 150 LSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTFGVLTNIGIAHQQGFASKLEKTEEK 209

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-Q 269
             +F+  E      L Y   + E ++       +    S+G+ ++   ++   ++  + Q
Sbjct: 210 LRLFKDAET-----LIYPAKYLEAVQIPYKPRKL----SWGEEEDNQLEVYSIRKPEDGQ 260

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---LTADVDTAIKALSVFH--PKE 324
           +++ +   GK+      GI      +  M   I  +   L    DTA+ A  + +  P E
Sbjct: 261 TYVTLYYGGKTF-----GISVPFTDSAAMENAITCVAVMLRFGYDTALIAERIRNLLPVE 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            R +      N    ++ID+SY+ +  S++ A+  L+Q   H     I +L D+
Sbjct: 316 MRLELKNGKNNT---SVIDDSYSNDLVSLQIALDFLNQ--QHQHTNSILILSDI 364


>gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 9/196 (4%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + G
Sbjct: 4   SLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK+
Sbjct: 63  AKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKD 121

Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   L++   + KTYA   ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L
Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178

Query: 182 VRPHIAVITTIAPAHL 197
             P IAV+T I  AH+
Sbjct: 179 TTPDIAVVTMIGEAHI 194


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 182/387 (47%), Gaps = 16/387 (4%)

Query: 27  VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ + IDSRS+   +   FFA+KG   DGH F+  A   G    V++      +      
Sbjct: 28  ISKLVIDSRSVIDPDGSLFFALKG-QRDGHGFLKDAYANGIRNFVISEAKYTRLFP-DAN 85

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V DVL AL+ +A   R +    ++ ITGS GKT  KE L   L++         S+N
Sbjct: 86  ILLVQDVLLALHTIAKYNRNQYDLKVLGITGSNGKTIVKEWLYQLLAADHNIVRSPKSFN 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++  +      GIFE G+S   E+  L  +++P++ ++T +  AH   F  ++
Sbjct: 146 SQIGVPLSVWEITAIHTLGIFEAGISKTDEMDALASMIKPNVGILTNVGEAHAEGFVSLK 205

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K ++F   +    +F+ Y   +   L      L  KT +S+ K + AD Q+   +
Sbjct: 206 EKLLEKLKLFNDAD----LFI-YAPEYTAGLSTDD--LPGKTKFSWSKKQQADLQILFVE 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               ++++    +G  +E +         +N ++    +  L    + A K L       
Sbjct: 259 PIDGKNYIRADFKGIEIECLIPFSDQASVENGIICWATLLALGYTPEEADKRLEKLTRVS 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R    +  +NQ   ++ID+SY+A+ +S+  A+  L+  + H   ++  +L D+ E G+ 
Sbjct: 319 MR-LELKNGINQ--CSVIDDSYSADISSLAIALDFLNLQNQH--PKKTLILSDIYETGKT 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++  + ++A +L   ++  +   G H+
Sbjct: 374 NRVLYTEIAALLKQKHVDRLIGIGTHI 400


>gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 508

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 153/359 (42%), Gaps = 20/359 (5%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
           R R     I ITGS GKT+TK  +T  LS          SYN  +GV   +     D   
Sbjct: 152 RNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQ 211

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G    G+I+ L  L  P I VIT+I P HL  F  IE +A  K E+ EGL + G
Sbjct: 212 IFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLPEDG 271

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---CSEQ--SWMEVQL 276
              LN D+ +      K     ++ ++ +G     + +   W +    + Q   +  V  
Sbjct: 272 IAVLNGDNYYCRTFGEK---FAVRKLF-YGTESPIERKYFLWAENIINTRQGLKFDAVTE 327

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G  ++     +G H   N+L  + +   L  + +   + LS   P      R +     
Sbjct: 328 DGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVP---HRLQLISTP 384

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL----SQSFHIDL 392
              T+ID+++N+NP   K A++ L ++      RRI V   M E+GE     +++   ++
Sbjct: 385 HGVTVIDDAFNSNPEGAKEALACLKEMDAK---RRIIVTPGMVELGEKEYEENKNLGKNI 441

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           AEV     +     S      LK+A      V     +D     +Q+ L  GDVV+ ++
Sbjct: 442 AEVCDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGDVVLFEN 500


>gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 535

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 16/287 (5%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
           R R     I ITGS GKT+TK  +T  LS          SYN  +GV   +     D   
Sbjct: 179 RNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQ 238

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G    G+I+ L  L  P I VIT+I P HL  F  IE +A  K E+ EGL + G
Sbjct: 239 IFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLPEDG 298

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---CSEQ--SWMEVQL 276
              LN D+ +      K     ++ ++ +G     + +   W +    + Q   +  V  
Sbjct: 299 IAVLNGDNYYCRTFGEK---FAVRKLF-YGTESPIERKYFLWAENIINTRQGLKFDAVTE 354

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G  ++     +G H   N+L  + +   L  + +   + LS   P   R +    +   
Sbjct: 355 DGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRLQ--LISTPH 412

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           G  T+ID+++N+NP   K A++ L ++      RRI V   M E+GE
Sbjct: 413 G-VTVIDDAFNSNPEGAKEALACLKEMDAK---RRIIVTPGMVELGE 455


>gi|251811443|ref|ZP_04825916.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805033|gb|EES57690.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 552

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 27/297 (9%)

Query: 133 IKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +K  Y     +NN+I   V L L +M    +F + E+ ++ L  +   ++L++P+IA++T
Sbjct: 7   LKDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSLNALNAVGNSSYLIKPNIAIVT 66

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIY 248
            I  AH+S F  I  I   KA IF+GL   G   +N D    ++L  +AK +   + T  
Sbjct: 67  GIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDTLHSDILIERAKQNTSNVITYS 126

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +   S  A    +  +     + + +   G+      + I   M +N L T   +S L  
Sbjct: 127 THDSS--ATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENSLATFATLSHLDI 184

Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            ++ A++ LS F P       KE     Y+         LID+++NA+  +M  AI   +
Sbjct: 185 PLERALENLSTFKPFEKVLNLKEVETPNYKV-------NLIDDTHNASLPAMINAIKAFN 237

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             +   +G +I  +G + ++G+ S+S H+ L +VL   N         ++L + DAL
Sbjct: 238 TQTKFFKGNKIIAIGQISDLGKHSKSLHLQLVDVLENSNAD-------YILCMDDAL 287


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 193/458 (42%), Gaps = 57/458 (12%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----- 85
           DSRS+  P+E  FFA+K    DGH +I    ++G    VV+          S+PV     
Sbjct: 30  DSRSLCFPEETLFFALKTDRNDGHHYISELYRRGVRNFVVS----------SVPVDYEHL 79

Query: 86  ------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                   V +   AL +LA   R      I+ ITGS GKT  KE L   LS        
Sbjct: 80  YPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSNGKTMVKEWLYQLLSPQFFVTRS 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             SYN+ +GV L++  +  +   GIFE G+S  GE+  L H+++P IAV+T I  AH  N
Sbjct: 140 PRSYNSQVGVALSVWLLNEETQVGIFEAGISEPGEMAALQHMIQPTIAVLTNIGDAHQEN 199

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F+ +E+    K  + +  E    +    DD   + +   S   G K  +S    K+A F 
Sbjct: 200 FASMEDKCREKMILLKDAE---ILVYPADDPIIQKVVNDSDLRGKKLAWSMS-DKSAPFY 255

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAIKALS 318
           ++  ++ +            +M  + +   YH  ++      I     AD ++ A+ AL 
Sbjct: 256 IKTVEKKA------------TMTTITY--VYHEHEDWFSIPFIDEASVADAIECAVVALE 301

Query: 319 V----------FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +              E    R      Q   TLI++SYN++  S+  A+  +++      
Sbjct: 302 MGMSMSALDERMQQLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDQQN 361

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHY 426
             R  ++ D+ + G      + +++ +     +S +   G  + A ++   +P+      
Sbjct: 362 RSRTLIISDIDQSGRQPSELYKEVSNLAVKRGVSQLIGIGQQLSANRNLIEMPKKFFFPT 421

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            E  +   +F Q   +  +V+++K +    F +L   L
Sbjct: 422 VEAFEKSEVFAQ---LHDEVILLKGARRFNFDQLTERL 456


>gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 517

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 14/292 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168
           ++ ITGS GKT+ K +    LS   +      S+N  +G+   +   +  D +  I ELG
Sbjct: 169 VLGITGSFGKTSVKFISDTILSEGLRVKNTPSSFNTPMGLSKIINNELERDREVFIAELG 228

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               GEI  +  LV+P I +IT I P H+  F  IE I   K E+ E L + G    NYD
Sbjct: 229 AKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKTKYELIEDLPEDGIAIFNYD 288

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVH 285
           + + + L  K+     K  Y +G        +   +    ++  E  L    G  ++   
Sbjct: 289 NDYVKPLADKTK----KKTYRYGTKDFDKLDVYADEIKVNETGSEFVLHIKGGGEIKCST 344

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N+L       +L   ++   + +S   P E R      + N     +ID++
Sbjct: 345 RLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVEHRLSLIPSSNNT---IVIDDA 401

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +N+NP   +AA+ VL +   H   R+I +   M E+G++ +  +  + +V++
Sbjct: 402 FNSNPVGFRAALDVLREFKDH---RKIIITPGMVELGDMEEEENRKIGQVMA 450


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 183/402 (45%), Gaps = 16/402 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAV 61
           ++ F +L + +   ++ IV    +  +  DSR+++      FFA++    DGH +I    
Sbjct: 1   MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60

Query: 62  QKGAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +G    V++    D++  +   +     V   L AL ++A   R      +I ITGS G
Sbjct: 61  DRGVRSFVISDPSKDLMEKMPQANW--MRVAHPLDALQRIAALRRSMFDIPVIGITGSNG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L    +      SYN+ IGVPL++ +M  +   GIFE G+S +GE+  L
Sbjct: 119 KTIVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++ P   +IT I  AH  NF  I+     K  +F       TI  N D    E+  A 
Sbjct: 179 ESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF---LHCHTIVYNGDCE--EIAAAI 233

Query: 239 SHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           S     +   S+ ++K  A   + + +    ++ ++ +  GK   +V         ++++
Sbjct: 234 SFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDII 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + ++S+L  +V +A K  +   P E R +    A + G  T+I++ Y+ +  S+  A+
Sbjct: 294 HCITLISVLCPEVLSARKRFAGLEPVEMRMEVK--AGDHG-NTIINDVYSNDVYSLTLAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
               + +     +++ +L D+ + G   +  +  +A  L +Y
Sbjct: 351 DFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVY 392


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 158/354 (44%), Gaps = 28/354 (7%)

Query: 33  DSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR IA ++   FFA  G   DGH +I  A  KG    V+  D    +      +  V +
Sbjct: 31  DSRKIAHEKLGVFFAFTGRQ-DGHLYIQDAYNKGVRNFVLEKDAEQEVQMPDANILWVAN 89

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL  LA   R + +  +I ITGS GKT  KE L   +S   K Y    SYN+ +GV 
Sbjct: 90  SWTALQSLAKHNRSQFQGPVIGITGSNGKTIVKEWLFQLMSPEYKIYRSPKSYNSQLGVA 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L+L  +    +  I E G+SH+GE+  L  +++P   V+T I  AH   F+   E    K
Sbjct: 150 LSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTYGVLTNIGIAHQQGFASKLEKTEEK 209

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-Q 269
             +F+  E      L Y   + E ++       +    S+G+ ++   ++   ++  + +
Sbjct: 210 LRLFKDAET-----LIYPAKYLEAVQIPYKPRKL----SWGEEEDNQLEVYSIRKPEDGE 260

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---LTADVDTAIKALSVFH--PKE 324
           +++ +   GK+      GI      +  M   I  +   L    DTA+ A  + +  P E
Sbjct: 261 TYVTLYYGGKTF-----GISVPFTDSAAMENAITCVAVMLRFGYDTALIAERIRNLLPVE 315

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            R +      N    ++ID+SY+ +  S++ A+  L+Q   H     I +L D+
Sbjct: 316 MRLELKNGKNNT---SVIDDSYSNDLVSLQIALDFLNQ--QHQHTNSILILSDI 364


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 170/434 (39%), Gaps = 11/434 (2%)

Query: 33  DSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR  S   Q  FFA++    DGH++I    +      VV+T +             V D
Sbjct: 30  DSRRLSFPEQSLFFALQTKTNDGHNYIQGLYKLRVRNFVVSTFLPEFESMPEANFLVVKD 89

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL KLA   R R    +I ITGS GKT  KE L   L +         SYN+ +GVP
Sbjct: 90  TLKALQKLAAHHRKRFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGVP 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++ +M      GIFE G+S   E+  L  ++ P I VIT I  AH  NF    +    K
Sbjct: 150 LSVWQMSDKNTLGIFEAGISQPDEMERLQPIIAPTIGVITNIGEAHQENFISSTQKCLEK 209

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +F   E    I  + DD+F      +S  L  K I        A   +   K+   ++
Sbjct: 210 LTLFNDCE---AIIYDGDDAFIANC-IESACLSHKAITWSRTDSEAPLYIESIKKLDSET 265

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +   L G               +N +  + ++  L     T++  +  F   E    R 
Sbjct: 266 IIRCTLLGFDRTYTIPFTDDASIENAIHCMAVMLYLKP---TSVNDIEKFKRLEPVAMRL 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     LI+++YN++  S+  A+            +   +L D+ + G L +S + 
Sbjct: 323 DVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVEKNLKCTLILSDILQSGTLPKSLYK 382

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +A+++    I  +   G  +     A    I   +  T D             +++++K
Sbjct: 383 KVADLVRRKKIDRIIGIGRDLKEYGGAF--DIEKEFYLTTDEFIKSPSFKKFKDELILIK 440

Query: 451 SSNSCGFYRLINLL 464
            S    F R+  LL
Sbjct: 441 GSRQFHFERISELL 454


>gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 465

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 17/341 (4%)

Query: 68  VVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V + TD    +  L+  + +  VD+ + AL       R      ++ ITG+ GKTTTKEM
Sbjct: 62  VAIVTDKKIDLDQLNDNVTLITVDNSVNALASFTSYYRGLFTIPVVGITGTAGKTTTKEM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMSHLGEIRFLTHLV 182
           L   L   ++   C  +Y +  G+ L L  +     D D  +FE+G+S+ G IR    + 
Sbjct: 122 LAHILRG-EQNVQC--TYKSMNGIVLNLKYLLGINEDTDVAVFEMGVSYPGNIRKSGAVF 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I +IT I  AHL     +E    AK E+ E L+  G + LN DD    + K   H  
Sbjct: 179 KPSIGMITNIGTAHLETCKTLERYIGAKGEMLEALDYKGQLLLNSDDE--NIKKIDLHPF 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLG 301
               +Y FG+     +++ + +  +E+   ++ ++G S + V+  G+G     N    + 
Sbjct: 237 K-GQVYYFGQKSECAYRISQIEYAAEKMVFQLHVKGHSSKRVYVPGLGEQCVYNAAAAIA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +   D+ + I+ +  F   E R       LN+   T+ID+++N+NP+S  AA+ VL 
Sbjct: 296 AAHLTGMDLSSCIERIGSFKQME-RHVSVERGLNRA--TIIDDTWNSNPSSAYAALKVLQ 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +I+ +   + +AV G +  +G      H+ L   +    IS
Sbjct: 353 KIAEN--KKSVAVFGKLQRLGAKQHEEHVKLGARMKELGIS 391


>gi|242315788|ref|ZP_04814804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106b]
 gi|242139027|gb|EES25429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106b]
          Length = 339

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 10/260 (3%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +  A  G++NN +G+PLTL R+       + ELGM+H GE   L  +  P +A++     
Sbjct: 4   RALATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQR 63

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H    + +E +A   A +   L   G      DD++  + +  +       I  F    
Sbjct: 64  EHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHG 120

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            A           + S + +   G  ++V  + +G H A+N L            +    
Sbjct: 121 AAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIK 180

Query: 315 KALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRI 372
             L  F P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+
Sbjct: 181 VGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RV 235

Query: 373 AVLGDMCEMGELSQSFHIDL 392
            V+G+M E+G+   +FH ++
Sbjct: 236 LVIGEMGEVGDEGPAFHREI 255


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 164/394 (41%), Gaps = 31/394 (7%)

Query: 27  VNGISIDSRSIA-PQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           +  I +DSR ++ P+ + F  +     + H +I    +KG    +V ++ V         
Sbjct: 24  IEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELYEKGVSNFIV-SEPVPEGKYPKAN 82

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D + AL+ L    R +    +I ITGS GKT  KE L   L           SYN
Sbjct: 83  IILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTIVKEWLYQLLEKDYNIVRSPKSYN 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++ +M  +    IFE G+S  GE+  L  ++RP+I + T I  AH   F  I 
Sbjct: 143 SQIGVPLSVWQMKPEHQLAIFEAGISQPGEMEHLEKIIRPNIGIFTNIGEAHNEGFLNIR 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +  + K  +F     + +  L Y   +  L +     L    +     +     QL  W 
Sbjct: 203 QKINEKLVLF-----SKSDLLIYSKDYLALNEC---VLNFHNLVGKKDNHEGGLQLFTWS 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL------- 317
           + +E     + +        HH     + Q + + + I  +    V+ AI          
Sbjct: 255 RKTEADLRIISVDKSE----HHSRIDALYQTIPIHINIPFVDEGSVENAIHCWALMLHLG 310

Query: 318 ---SVFHPKEGR--GKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              SV   +  +      R  L QG    ++I++SYN++  S+  A+  L Q   H    
Sbjct: 311 MEHSVIQQRMDQLGNIAMRLELKQGINNCSVINDSYNSDLGSLAIALEFLQQQQQH--PT 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           R  +L D+ + G+   S + ++A +L    I+ V
Sbjct: 369 RTVILSDILQSGKSDASLYEEVASLLQQKGINKV 402


>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
          Length = 430

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 189/383 (49%), Gaps = 37/383 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
              IDSR +   + F  +KG   DGH FI  A++ GA  V+V  D+V        P   +
Sbjct: 11  NFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVV------DFPKEKI 64

Query: 89  DDVLGALNKLAVAAR--LRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V   L ++ ++A   +   A + I ITGS GKTTTKE L   L +  KT+    + N 
Sbjct: 65  IKVNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLAYFKTFRNEMNLNT 124

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+PL++     + +  I E G+   G++ FL+      +A+IT +  +HL     +E 
Sbjct: 125 EIGIPLSILNNYNNEETVILEEGLRKKGDLEFLSRYFNLDVAIITNVGASHLEFLDSLET 184

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KW 263
           +A  K +I   ++K G + +N D S  + L A  H   +    +FG     D  L+  ++
Sbjct: 185 VAEEKMKITSNMDK-GVLIINGDYSLLKEL-APKHLNRL----TFGTKDENDAVLKSFEY 238

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH-- 321
            +    ++    LQ   M  ++H    + ++  ++ L    +L   +D  +    +F+  
Sbjct: 239 NENHTTTFYARILQEDLMVTLNH----YWSEGQILDLLSGLLLLRFIDLPVDPYYLFNIN 294

Query: 322 -PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDM 378
            P++    R++  + +G   ++++SYNA+  S K+A + + +  +SP     +I ++G++
Sbjct: 295 IPQD----RFQT-IKRGNLLIVNDSYNASYESFKSAFNSIKKWNLSP-----KIIIMGEI 344

Query: 379 CEMGELSQSFHID-LAEVLSLYN 400
            E+G+ S+ +HI  + E L++++
Sbjct: 345 KELGKYSEEYHIKVITEALNIFD 367


>gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 112/226 (49%), Gaps = 14/226 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           VN   IDSR     + F  +KG + DGH FI    +KGA           S  S +I   
Sbjct: 22  VNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKGA---------FGSFSSKNIEKS 72

Query: 85  -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL  +A   +       I ITG+ GKTTTKE+L+  LS     Y   G+Y
Sbjct: 73  NVLVVDDTLKALTDIAKYKKDFIDIK-IGITGTAGKTTTKEILSYLLSYFYPVYYTKGNY 131

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P+TLA +  +  +G+FELG S  G+I +LT ++  +IAVIT +   H     G 
Sbjct: 132 NNQIGLPITLANIDKNYRYGVFELGASKKGDISYLTDILNQNIAVITNVGYGHTEGLGGF 191

Query: 204 EEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           E +   K  I +  + K    +LN ++   +    ++    I ++Y
Sbjct: 192 EGVLQEKKNILKTADFKIAPKWLNINEKNIKTFGYENADTNINSVY 237


>gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
 gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
          Length = 469

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-K 219
           +  +FE+ +++ G ++      +P I ++  I   HL++    EE   AKAEI EGL+  
Sbjct: 157 EVAVFEMPVAYPGYLKVACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPN 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +G + LN DD   + +   SH  G+  I   GK  ++ FQ +  K         ++ Q K
Sbjct: 217 SGILILNADDENIKRVLDVSHLQGVVYI---GKGDDSQFQAKDIKYAKGGMAFTLKYQNK 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +    G G H   N L  +  V  +  D+  AI+ LS+F   E     ++  LN+   
Sbjct: 274 EYDAFIPGYGEHNVYNALAAIAAVFYVGVDISVAIQRLSLFEQVE-EHLEFKRGLNE--C 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           T+I++++N++P SM  A+ VLS +S   E + IA+LG M ++GE
Sbjct: 331 TVINDTWNSSPLSMATALGVLSDMSK--EKQSIALLGYMPQLGE 372


>gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 198

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ +  DSR       F  + G   DGHD++ +AV  GA   +   D        +IPV
Sbjct: 23  IVSSVVFDSRKAVADSLFVPLVG-ERDGHDYVANAVANGAVAALWQKDHANR--PENIPV 79

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             VDD L AL KLA     +   T++ ITGS GKTTTK+M+   LS     +    ++NN
Sbjct: 80  LVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANFNN 139

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            IGVP+T+  M    +  + E+GM   G++  L+ +V P + VIT I  AH+  F
Sbjct: 140 EIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFF 194


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 163/389 (41%), Gaps = 39/389 (10%)

Query: 33  DSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89
           DSR  S   Q  FFA+K    DGH +I    +      VV +DM+    S+    F  V 
Sbjct: 30  DSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL KLA   R +    +I ITGS GKT  KE L   L +         SYN+ +GV
Sbjct: 89  DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ +M      GIFE G+S   E+  L  ++ P I +IT I  AH  NF    +    
Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F   E    I  + DD F      +S  L  K I               W +   +
Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250

Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315
           + + ++ +  K  E + H   +G++             +N++  + ++  L     T++ 
Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   E    R           LI+++YN++  S+  A+          + +   +L
Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            D+ + G L +S +  +A+++    I  +
Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 39/389 (10%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89
           DSR ++ P+++ FFA+K    DGH +I    +      VV +DM+    S+    F  V 
Sbjct: 30  DSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL KLA   R +    +I ITGS GKT  KE L   L +         SYN+ +GV
Sbjct: 89  DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ +M      GIFE G+S   E+  L  ++ P I +IT I  AH  NF    +    
Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F   E    I  + DD F      +S  L  K I               W +   +
Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250

Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315
           + + ++ +  K  E + H   +G++             +N++  + ++  L     T++ 
Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   E    R           LI+++YN++  S+  A+          + +   +L
Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            D+ + G L +S +  +A+++    I  +
Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396


>gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
 gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
          Length = 461

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 12/290 (4%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            IFELG+ + G I+    + +P I +IT I   HL     +E    AKAEI EG+++ GT
Sbjct: 161 AIFELGLGNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIKEDGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N DD+  + +  K        I  FG    AD++  K +  +      +++  +   
Sbjct: 221 LIINADDANTKKISLKRFK---GKIIKFGLQDTADYKASKVEFANTGMKFVLEVADERYN 277

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V   G G H   N L  +     +   +  AI  L  F  +  R   +   L  G  T+I
Sbjct: 278 VFVPGYGEHQVYNALAAIAASHEMGLTIRQAIAGLRTF-KQMARHLEFTTGL--GDSTII 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+++  NP S++AA+ V+  +    + + I VLGD+  +G   + +H ++  ++++  I 
Sbjct: 335 DDTWTNNPTSVEAALKVIDTVGK--DKKVILVLGDIKRLGNFEEKYHREIGSMVAVRKID 392

Query: 403 HVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     + D   +   S  VH  + + G+   ++  L D D +V+
Sbjct: 393 TLITIGKRAEKIADQAQKDGTSAEVHTFKEVAGVLELLKPKL-DADTIVL 441


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 39/389 (10%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89
           DSR ++ P+++ FFA+K    DGH +I    +      VV +DM+    S+    F  V 
Sbjct: 30  DSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL KLA   R +    +I ITGS GKT  KE L   L +         SYN+ +GV
Sbjct: 89  DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ +M      GIFE G+S   E+  L  ++ P I +IT I  AH  NF    +    
Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F   E    I  + DD F      +S  L  K I               W +   +
Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250

Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315
           + + ++ +  K  E + H   +G++             +N++  + ++  L     T++ 
Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   E    R           LI+++YN++  S+  A+          + +   +L
Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            D+ + G L +S +  +A+++    I  +
Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 39/389 (10%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89
           DSR ++ P+++ FFA+K    DGH +I    +      VV +DM+    S+    F  V 
Sbjct: 30  DSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL KLA   R +    +I ITGS GKT  KE L   L +         SYN+ +GV
Sbjct: 89  DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ +M      GIFE G+S   E+  L  ++ P I +IT I  AH  NF    +    
Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F   E    I  + DD F      +S  L  K I               W +   +
Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250

Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315
           + + ++ +  K  E + H   +G++             +N++  + ++  L     T++ 
Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   E    R           LI+++YN++  S+  A+          + +   +L
Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            D+ + G L +S +  +A+++    I  +
Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396


>gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
 gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
          Length = 500

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 164/397 (41%), Gaps = 50/397 (12%)

Query: 10  LLQAIQGH-SIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           LLQ + G+    ++    +N   I  +S ++   + F A KG  +DGHDFIL A  KGA 
Sbjct: 8   LLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGAS 67

Query: 67  LVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGSV 117
           L++  + + + +  SL   +  V+D+  A      AA L  K          I+ +TG+ 
Sbjct: 68  LIIAQDEEKIPTNDSLQYII--VEDIKKA------AADLSHKLFDISPDDFKILGVTGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM----SHLG 173
           GK+TT  ++   L    K    I +    I +   + + P +    I EL      S   
Sbjct: 120 GKSTTVSLVHHILQKSDKDSTLISTV--EIKIKDEVVKEPYNTTPSILELSKILKNSKEN 177

Query: 174 EIRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            I F+   V  H             I   T I   HL      EE  S K  +   L+  
Sbjct: 178 NIEFINMEVSSHAIHQRRIEGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDE 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-K 279
           G I +N D      L         K + ++G  KNADF +  ++Q  +Q    ++ +  K
Sbjct: 238 GKIVINLD-----RLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHK 292

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S E+  H IG     N+     I ++   + +  I ++S F    GR +    + + GFF
Sbjct: 293 SYEIRSHLIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFF 352

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +ID  +   P ++   +   S I+   EGR I V G
Sbjct: 353 AVID--FAHTPDALNEVLKTASSIT---EGRIITVFG 384


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 27  VNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           +  I  DSR I  Q+A    FFA+ G    G++FI +A Q+G    V+  +  +     +
Sbjct: 26  ITHIYFDSRKI--QQANGALFFALSGHSRSGNEFIENAYQQGIRFFVIAKNASSKFHPDA 83

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  F V++ L AL +LA   R +    ++AITGSVGKTT KE +   +S   K      S
Sbjct: 84  L-YFQVEEPLTALQQLATHHRKQYTYPVVAITGSVGKTTFKEWIFHCISDKFKVVRSPKS 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ IGV L+L  M  +      E G+S  GE++ L  +++P   + T    AH  NF+ 
Sbjct: 143 FNSQIGVALSLLEMHENASIAFIEAGISKPGEMKILRDMIQPDFGIFTAFGKAHRENFAD 202

Query: 203 IEE 205
            EE
Sbjct: 203 NEE 205


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 27  VNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           V  +  DSRS+  +      F A+ G ++D H F+     +G    +V   + A      
Sbjct: 23  VQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQMYARGVRAFMVERPLEA------ 76

Query: 83  IPVFG---VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +P  G   V++ + AL  LA   R + + T++ ITGS GKT  KE +   L +  K Y  
Sbjct: 77  LPECGYVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKTVIKEWIAEELPAGMKCYRS 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             SYN+ +GVPL++  +  D    + E G+S  GE+  L  ++RP + V T+I  AH  N
Sbjct: 137 PKSYNSQLGVPLSVLMIEGDEQLALIEAGISKPGEMARLERIIRPDVVVFTSIGDAHQEN 196

Query: 200 FSGIEEIASAK 210
           F  +E+    K
Sbjct: 197 FLNLEQKCDEK 207


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 175/385 (45%), Gaps = 18/385 (4%)

Query: 26  FVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            +  I+ DSR I      AF AI      G  FI  A+ +G   V+++        +++ 
Sbjct: 23  LIKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIESAMDRGIK-VIISEHHYPEFENITW 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V++ +  L KLA      S    I ITGS GKT  KE L   L +   T     S+
Sbjct: 82  II--VENSVAFLQKLAKYHFENSHLQSIGITGSNGKTILKEWLYQCLWNEFPTVKSPKSF 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IG+PL+L ++      GIFE+G+S   E+  L ++  P I ++T I  AH +NFS  
Sbjct: 140 NSQIGLPLSLLQINDSHQLGIFEVGISKPHEMEKLENIFHPQIGLLTHIGTAHAANFSSE 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           EE+   K  +F+  E    I  N D+   +     S++      Y F K      Q+   
Sbjct: 200 EELIDEKIRLFKNSE---VIIYNGDNDLVDQKIKNSYSDKKLIAYGFKKEN----QVFIK 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S+   + V+  G+ +    H        N +  + ++  L  +    ++ +++    
Sbjct: 253 SNISKDENIIVEYFGEEISFPAHQRDEATLTNAMALITVLKELNIENKKIVEKINLLKAV 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R +      N+G   +I++S+N +  S+K A+  L++   + + ++  VL D+  +  
Sbjct: 313 EMRLEAIEG--NKGNI-VINDSFNLDLDSLKTALQFLNE---YNKAKKSLVLTDIVGVST 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
            ++  + ++AE+++  N   V+L G
Sbjct: 367 NAKELYEEVAELVNDQNFDSVFLIG 391


>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 492

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 169/393 (43%), Gaps = 40/393 (10%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P+    DLL+ ++ H I   P   ++G+  DSR   P+  F AIKG   DG  ++  A++
Sbjct: 9   PIMRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIK 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKT 120
            GA  VV + D+    G   + V  V+D   A+ K+A        SK T+I ITG+ GKT
Sbjct: 68  NGAVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFG-IFELGMSHLGEIR 176
           +   ML   L         +G+  N IG   +P T    P  +D   +F L M + G ++
Sbjct: 125 SVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHT-TPESLDLQELFSL-MVNEG-VK 181

Query: 177 FLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           ++   V  H             IAV T ++  HL     +EE A  K+++F+  +K   I
Sbjct: 182 YVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVI 241

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD +  ++   S       + ++G    A    ++ K        +VQ+Q K  E+
Sbjct: 242 --NIDDKYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEI 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +   L   + +  +ALS    K   G+       + F+  ID
Sbjct: 296 SLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTVK---GRFEPVETGRDFYVFID 352

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P  ++   +++  +  +  GR+I V G
Sbjct: 353 --YAHTPDGIR---NIMEALKEYEAGRKILVFG 380


>gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
 gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
          Length = 523

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 164/358 (45%), Gaps = 24/358 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELG 168
           I ITGS GKT+TK ++   +     +     SYN  +G+ +T+     P+   F + E+G
Sbjct: 181 IGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTIRNYLKPIHQVF-VCEMG 239

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H+GEI  L   V+P I V+T++ P HL  F  +E I   K ++ E L K G   +N D
Sbjct: 240 ADHVGEITRLMKYVQPQIGVVTSVGPQHLLTFGSLENIIHEKMQMIERLPKDGLGVINLD 299

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           + +    + K+       + SFG +S++ D++  K    +  S+  V +  K  EV  H 
Sbjct: 300 NDYIRQYRVKNSV----PLISFGIQSEDVDYRAVKISYTTTGSYFTV-VHAKE-EVAFHT 353

Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  + +   L     +  +A++     E R +  +   ++     ID++
Sbjct: 354 KLLGELNIMNILSGIVVARHLGISWKSLQRAVANMEQVEHRLELKKINGHR----FIDDA 409

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +NANP   K A+ VLS +     G+R  +   M ++G+    ++ +  + +  +    + 
Sbjct: 410 FNANPIGAKMALEVLSMMP----GKRYIITPGMIDLGKKQDEYNREFGKRMKHFVDEVIL 465

Query: 406 LSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +      A+++ L      + H+H  +T+     ++     + D +++++     F R
Sbjct: 466 VGPKQTKAIQEGLAEMNFDADHIHVYQTVQEALAYVYEHADEHDTILLENDLPEAFSR 523


>gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
 gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
          Length = 469

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 9/224 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-K 219
           +  +FE+ +++ G ++      +P I ++  I   HL++    EE   AKAEI EGL+  
Sbjct: 157 EVAVFEMPVAYPGYLKVACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPN 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +G + LN DD   + +   SH   ++ +   GK+ ++ FQ +  K  ++     ++ Q  
Sbjct: 217 SGILILNADDENIKRVLDVSH---LQNVVYIGKNDSSQFQAKDIKYANKGMAFTLKYQNT 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +    G G H   N L  +  V  +  D+  AI+ LS+F   E     ++  +N+   
Sbjct: 274 EYDAFIPGYGEHNVYNALAAIAAVFYVGIDISVAIQRLSLFEQVE-EHLEFKRGMNE--C 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           T+I++++N++P SM  A+ VLS +S   E + IA+LG M ++GE
Sbjct: 331 TVINDTWNSSPLSMATALGVLSDMSK--EKQSIALLGYMPQLGE 372


>gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
 gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
          Length = 457

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 12/290 (4%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            IFELG+ + G I+    + +P I +IT I   HL     +E    AKAEI EG+   GT
Sbjct: 156 AIFELGLGNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGT 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N DD+  E +   S+      I  FG   +AD++    +         +++      
Sbjct: 216 LIINADDANIEKI---SYQKFKGKIIKFGLQDSADYKASAIQFAHTGMKFVLEVADTKYN 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V   G G H   N L  +   S +   +  AI  L  F  +  R   +   L  G  T+I
Sbjct: 273 VFVPGYGEHQVYNALAAIAACSEMGLSIRQAIAGLRSF-KQMARHLEFTTGL--GDSTII 329

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+++  NP S++AA+ VL  +    E + I VLGD+  +G   + +H ++   ++   I 
Sbjct: 330 DDTWTNNPTSVEAALKVLDTVGK--EKKVILVLGDIKRLGNFEEKYHREIGSKVAERQID 387

Query: 403 HVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G    A+ D   +      VH  + + G+   ++  L D D +V+
Sbjct: 388 TLITIGKRAEAIADQAKKDGTKAEVHTFKDVIGVLEILKPKL-DADTIVL 436


>gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 462

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 12/290 (4%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            IFELG+ + G I+    + +P I +IT I   HL     +E    AKAEI EG+   GT
Sbjct: 161 AIFELGLGNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N DD+  E +  +        I  FG   +AD++    +         +++      
Sbjct: 221 LLINADDANIEKISLQKFK---GKIIRFGLQDSADYKASAIEFAHTGMKFVLEVADTKYN 277

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V   G G H   N L  +   S +   +  AI  L  F   +   +        G  T+I
Sbjct: 278 VFVPGYGEHQVYNALAAIAACSEMGLSIRQAIAGLRTF---KQMARHLEFTKGIGDSTII 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+++  NP S++AA+ VL  +    E + I VLGD+  +G   + +H ++   ++   I 
Sbjct: 335 DDTWTNNPTSVEAALKVLDTVGK--EKKVILVLGDIKRLGNFEEKYHREIGSKVAERQID 392

Query: 403 HVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G    A+ D   +      VH  + + G+   ++  L D D +V+
Sbjct: 393 TLITIGKRAEAIADQAKKDGTKAEVHTFKDVTGVLEILKPKL-DADTIVL 441


>gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
 gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
          Length = 510

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 32/298 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +  S   ++ ITGS GKT+ K +    L    +T     S+N  +G+   +    +D + 
Sbjct: 155 KKESGLKVLGITGSFGKTSVKFISDTILKEKYRTKNTPSSFNTPMGLSKVINN-ELDKNH 213

Query: 163 GIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            +F  ELG    GEI  +  LV P I +IT + P H+  F  IE I + K E+ E L + 
Sbjct: 214 EVFIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNTKYELIEDLPED 273

Query: 221 GTIFLNYDDSFFELL----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           G    NYD+ + + L    K K++  GIK I      +  D   +          + V  
Sbjct: 274 GIAIFNYDNDYVKPLADKTKKKTYRYGIKDI------EKLDVYAKD---------IRVNE 318

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA-IKALSVFHPKEGRGK------R 329
           +G +  +   G+G     ++L+ +  +S L A    A +   ++   K G  K      R
Sbjct: 319 KGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHR 378

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                +   + +ID+++N+NP   +AA+SV+ +     EG++I +   M E+G + + 
Sbjct: 379 LNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKIIITPGMVELGAIEEE 433


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 157/362 (43%), Gaps = 14/362 (3%)

Query: 33  DSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR +  P E  FFA+   + DGH +I    + G    VV+  +             V +
Sbjct: 30  DSRQVFYPAETLFFALSTKNNDGHKYINELYELGVRNFVVSQILPDWENYNDANFLVVTN 89

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL ++A   R +    +I ITGS GKT  KE L   L           SYN+ IGVP
Sbjct: 90  TLAALQRIAAYHRNQFDIPVIGITGSNGKTVVKEWLYQILHQDFNITHSPRSYNSQIGVP 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++ +M      GIFE G+S   E+  L  ++RP I ++T I  AH   F  +++    K
Sbjct: 150 LSVWQMNDHTQLGIFEAGISQPEEMSKLEAIIRPTIGILTNIGQAHQEGFKSMKQKCLEK 209

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E+F   +    I    ++   +     +     +  +S   S  +   + K ++  + +
Sbjct: 210 LELFINCD---VIICEEENELIDECMEIACLSHKRLTWSRRGSSKSPLYIMKIEKQEKST 266

Query: 271 WMEVQLQGKSMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +   + G + ++V           A ++L T   + +   D++  +  L      E   
Sbjct: 267 TIHYSVLGMASKLVIPFSDDASIEDAIHVLATAFYLHMSLPDINERMSTL------EPVA 320

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R      +   TLI++SYN++  S+  A+  L+Q +   E +++ ++ D+ + G + + 
Sbjct: 321 MRLDVRQGKNNSTLINDSYNSDINSLNIALDFLAQRATTSEQKKVLIISDIPQSGLIPRE 380

Query: 388 FH 389
            +
Sbjct: 381 LY 382


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 17/323 (5%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD +  L KLA           I ITGS GKT  KE L   LS   +      S+N+ I
Sbjct: 11  VDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKSPKSFNSQI 70

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PL+L  +  +   GIFE+G+S   E+  L  +  P I V+T I  AH+SNF   + + 
Sbjct: 71  GLPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHISNFKSEKHLV 130

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQL-RKWKQ 265
             K  +F+  E   +I  N D+    L+  K + L   K + S+G +K+ +  +   WK 
Sbjct: 131 DEKISLFKDSE---SIIFNGDNI---LVSNKINTLYSSKNLISYGFNKDNNIHISSNWK- 183

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              Q  + VQ   KS              N+L  + ++ +L    +  I+ ++     E 
Sbjct: 184 -DRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEM 242

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N     +I++S+N +  S+K A      I  + + ++  ++ D  E  + +
Sbjct: 243 RLESVNGIKNN---LIINDSFNLDLDSLKIAFEF---IKSYQKPKKSLIITDFTEKSD-A 295

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
            + + ++A +++  N + V+L G
Sbjct: 296 DNLYQEVASLINEQNFNKVFLIG 318


>gi|219558136|ref|ZP_03537212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
          Length = 268

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 67/121 (55%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E+ 
Sbjct: 53  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 112

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN D
Sbjct: 113 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 172

Query: 229 D 229
           D
Sbjct: 173 D 173


>gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 511

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 14/282 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168
           ++ ITGS GKT+ K +    LS   +      S+N  +G+   +   +    +  I ELG
Sbjct: 163 VLGITGSFGKTSVKFISNTILSEGLRVKNTPSSFNTPMGLSKIINNELENTTEVFIAELG 222

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               GEI  +  LV+P+I +IT I P H+  F  I+ I + K E+ E L + G    NYD
Sbjct: 223 AKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNIQNTKYELIEMLPENGVAIFNYD 282

Query: 229 DSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVH 285
           + + + L  K+    IKTI Y     +  D         +   +  + ++  G+ +E   
Sbjct: 283 NDYVKPLADKTE---IKTIRYGIKDVEKLDVYATDISVDEMGSKFILHIRELGE-IECES 338

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N+L       IL   ++     +    P E R        N G   +ID++
Sbjct: 339 KLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVEHRLNIVNS--NSGVI-VIDDA 395

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +N+NP   +AA+ V+S+     +GR+I +   M E+G++ + 
Sbjct: 396 FNSNPIGFRAALDVISEFK---DGRKIIITPGMVELGDMEEE 434


>gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 523

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 19/292 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + K A   R      II ITGS GKT+ K +L   +       A   SYNN +G+  T+ 
Sbjct: 166 MQKAAKKLRDHENLCIIGITGSYGKTSVKNVLYQLMKEDWYALATPQSYNNRMGITKTIL 225

Query: 155 R--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               P+   F + E+G  H+ EI  L   VRP   ++T +   HL+ F  +E I   K +
Sbjct: 226 EYLQPLHELF-LCEMGADHVHEIEELMKFVRPQYGIVTAVGQQHLATFHSMENILHEKMQ 284

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E L + G  FLN D+ +      + H    + I+ FGK   AD++        E S  
Sbjct: 285 MIEQLGREGIGFLNADNEWIRSYPLRVHC---RVIW-FGKDMLADYRYGNVSYDEEGS-- 338

Query: 273 EVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +  K++  V H   +G H   N+   + +   L    D   K          R ++ 
Sbjct: 339 RFTITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQLPYVTHRLEKK 398

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           + A     +TL+D++YNANP   + A+ VL ++      +RI +   + ++G
Sbjct: 399 QMA----DYTLLDDAYNANPKGARYALDVLREMP----QQRIIITPGLIDLG 442


>gi|99036017|ref|ZP_01315056.1| hypothetical protein Wendoof_01000094 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 163

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 9/154 (5%)

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S     R++A+L
Sbjct: 14  ALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ---RKVALL 70

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434
           GDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   H++++ + L 
Sbjct: 71  GDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDS-NQLK 129

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + + + + D ++VK S        ++L++ EF
Sbjct: 130 SDLANIIQNNDAILVKGSRGMK----MDLIVREF 159


>gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 482

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 167/387 (43%), Gaps = 40/387 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+ ++ H I   P   ++G+  DSR   P+  F AIKG   DG  ++  A++ GA  V
Sbjct: 5   DLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVAV 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V + D+    G   + V  V+D   A+ K+A        SK T+I ITG+ GKT+   ML
Sbjct: 64  VTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLV 182
              L         +G+  N IG   +P T    P  +D   +F L M + G ++++   V
Sbjct: 121 KAILEQQNNKVGLVGTIQNMIGDRVIPTTHT-TPESLDLQELFSL-MVNEG-VKYVVMEV 177

Query: 183 RPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             H             IAV T ++  HL     +EE A  K+++F+  +K   I  N DD
Sbjct: 178 SSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVI--NIDD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +  ++   S       + ++G    A    ++ K        +VQ+Q K  E+     G
Sbjct: 236 KYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  + +   L   + +  +ALS    K   G+       + F+  ID  Y   
Sbjct: 292 LFSVYNALAAITVADFLGIPLRSVREALSHVTVK---GRFEPVETGRDFYVFID--YAHT 346

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P  ++   +++  +  +  GR+I V G
Sbjct: 347 PDGIR---NIMEALKEYEAGRKILVFG 370


>gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
 gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
          Length = 175

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 77/148 (52%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N + IDSR       FFAI G   DGH FI  A++ G   ++ N      I    + + 
Sbjct: 27  INELVIDSRIANKNSVFFAIIGESLDGHKFINSAIENGCKTIIKNKSNNFEIIGEDLNII 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V++   AL  +A   + +     I ITGSVGKT+T++M+  A+SS  KT    G+ NN 
Sbjct: 87  EVENTEFALGDIARYYKSKFDIPYIGITGSVGKTSTRDMVFSAVSSKFKTLKNTGNLNNQ 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GVPLTLA +    +  + E+GMS   E
Sbjct: 147 FGVPLTLANLDKSYECAVIEMGMSGFNE 174


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 189/441 (42%), Gaps = 58/441 (13%)

Query: 33  DSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFGV 88
           DSR  S   +  F A+KG ++D H FI   V++   A L    T + A  G + +P    
Sbjct: 29  DSRNCSFGEEPLFVAMKGTNHDSHAFIGEMVRRDVKAFLAERKTQLPAGCGCVVVP---- 84

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              + AL +LA   R R K  ++ ITGS GKT  KE +   + +  K +    SYN+ +G
Sbjct: 85  -SAIAALQQLAAHHRTRFKGRVVGITGSNGKTVVKEWIAQQIPAGVKYFRSPKSYNSQLG 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V L+L  +  D +  + E G+S  GE+  L  ++RP   + T+I  AH  NF+ +EE ++
Sbjct: 144 VALSLLMIEGDEELALIEAGISCPGEMVRLERMIRPDTVIFTSIGEAHQENFTSLEEKSA 203

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K  + +G     TI  +   S  E +        I+T+Y            R+ +  +E
Sbjct: 204 EKLVLAKGAR---TIIYHGGSSLLERM--------IRTLYGG----------RQLQDAAE 242

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E    G    V+  G G   AQ               V    + +    P  GR +
Sbjct: 243 YPLPEQLPAG----VLESGAGRVDAQL--------------VGAFCRVMGFPDPDFGRIR 284

Query: 329 --RYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGE 383
               R  L +G     LID++YN++  S+  A+  L  ++    GR +  +L D+ + G 
Sbjct: 285 PVAMRLELKEGINGSLLIDDAYNSDINSLSIALDYLHNMAA---GRPMTLILSDIEQSGV 341

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                + ++A +++   +S +   G  +         +    +  T D L   ++   V 
Sbjct: 342 EDGVLYGEVARLVAAAGVSRLIGVGDRIRNAGANF--ACDSAFYRTTDELLRNLRRDDVA 399

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G VV++K S    F R+ + L
Sbjct: 400 GRVVLIKGSRDSHFERVSHAL 420


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 24/387 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P   ++ +  DSR +   +   FF +KG   + H +I     KG    V   D    I +
Sbjct: 24  PNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYHKGVRSFVY-YDQGFDITN 81

Query: 81  LSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                F    D L AL  LA   R +    +I ITGS GKT  KE L   L+        
Sbjct: 82  FPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGKTVVKEWLYQLLAYKYTIVRS 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             SYN+ IGVPL++ +M    +  IFE G+S  GE+  L  +++P I V T I  +H   
Sbjct: 142 PKSYNSQIGVPLSIWKMDTLYNLAIFEAGISQTGEMERLEKIIKPSIGVFTNIGSSHDEG 201

Query: 200 FSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           FS  EE  + K ++F  + K      F  Y     +L    + +L   T   + K  + +
Sbjct: 202 FSDKEEKIAEKFKLFAHVNKLICNKEFSEYAPQSVDLY---TWSLDDNTANLYVKEISVE 258

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 K   E   + +++  K      + I        L+ + +     ++++  +  L
Sbjct: 259 DTGTSIKSTYEDREISIKIPFKDKASTENAI------TCLLVMLVFGYSESEIEDKMSKL 312

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
              HP + R +  +  +N    ++ID+SYN++ +S++ A+  L+    H    +  +L D
Sbjct: 313 ---HPVKMRLE-MKSGINNT--SIIDDSYNSDLSSLEIALDFLNHQQQH--QNKTLILSD 364

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
           + + G   Q  +  +A +L    +  V
Sbjct: 365 IQQSGLDGQQLYQTVARLLESKGVDKV 391


>gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
 gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
          Length = 508

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 157/371 (42%), Gaps = 43/371 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  + G++ DSR++ P   F A++G   DGH FI  A++ GA  V V  + + +  S S+
Sbjct: 33  RAVITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGA--VAVACEELPAAYSDSV 90

Query: 84  PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V D   AL +L+ A       K  +I +TG+ GKTTT  ++T  L++       IG
Sbjct: 91  TWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYIG 150

Query: 142 SYNNHIG---VPLT-----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    IG   +PL            L R  VD       + +S    +    H +    A
Sbjct: 151 TGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRAA 210

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T + P HL     +EE A AK  +F+ L   G   +N DD   E + A+   L  + +
Sbjct: 211 VFTNLTPEHLDFHETMEEYAEAKRLLFDQLNAEGFAVINADDPRAEFMAAR---LAPERV 267

Query: 248 YSFGKSKNADF--QLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +      N       R++         E S  +V   G+SM +     G +   NML   
Sbjct: 268 FCCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAF 327

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASMK 354
            +   L  D  TA+++L+      GR +R       RCA       ++D  Y   P +++
Sbjct: 328 TVGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCA-------VVD--YAHTPDALQ 378

Query: 355 AAISVLSQISP 365
            A+  L  ++P
Sbjct: 379 KALEALRAVTP 389


>gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
 gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
          Length = 326

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 128/298 (42%), Gaps = 18/298 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S+D   +   E F      ++D H  I  A   GA  ++   D       + IP+  VDD
Sbjct: 32  SMDYEKVGKGEIFVTADAKNHDTHHLIETAYLNGALAIITKKDTACP--KVPIPIIKVDD 89

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L A+ KLA       +  +I ITGS GKT TK ++   L +  KT        +  G  
Sbjct: 90  PLRAMEKLAAILIRNYQPIVIGITGSSGKTLTKNLIVTLLKNYGKTCYNEDGAGDFTGFT 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA--PAHLSNFSGIEEIAS 208
           L +        F + E+  +H G I     +  P + VIT I   PA   +    E    
Sbjct: 150 LGILNADFPCKFLVLEVDTTHSGNIDLFNQITLPKVGVITDIRFHPARSIDLR--ESTVR 207

Query: 209 AKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            KA+IF+     G +  LN+D  + ELL  ++      TI SFG ++N D +L      +
Sbjct: 208 EKAKIFQN----GCVAVLNFDTPYTELLLQEARK-NKATIISFGGNENCDVRL--LSHSN 260

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPK 323
             + +++    K+ ++  H    H+   +L T+G++  L   V  ++    LSVF  K
Sbjct: 261 NTAVVKIGRSQKTYKLSDH--NQHLKCAVLATIGVMKALKLKVTRNSLNNTLSVFQSK 316


>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
 gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
          Length = 484

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++GI++DSR I P   F A+KG   DGH +I  A++KGA  VV        I +++ I V
Sbjct: 23  ISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +DV+G   KLA        SK  ++ +TG+ GKTT   +L             I + 
Sbjct: 83  NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139

Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182
            N+I             P+T    L RM  +   +   E     +    +G ++F     
Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
                + T +   HL     +E    AK   F+GL KT     N DD       +  KAK
Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLDDKNGLVMTQNTKAK 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H   ++++        +DF+ +  +   E   +++     ++EV    IG   A N+L 
Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  + ALS   P  GR    R    +G+  ++D  Y   P +++  ++
Sbjct: 301 VYGAACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+G  I V+G
Sbjct: 357 AIHEVL-NGKGHVITVVG 373


>gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
 gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
          Length = 484

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++GI++DSR I P   F A+KG   DGH +I  A++KGA  VV        I +++ I V
Sbjct: 23  ISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +DV+G   KLA        SK  ++ +TG+ GKTT   +L             I + 
Sbjct: 83  NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139

Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182
            N+I             P+T    L RM  +   +   E     +    +G ++F     
Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
                + T +   HL     +E    AK   F+GL KT     N DD       +  KAK
Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLDDKNGLVMTQNTKAK 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H   ++++        +DF+ +  +   E   +++     ++EV    IG   A N+L 
Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  + ALS   P  GR    R    +G+  ++D  Y   P +++  ++
Sbjct: 301 VYGAACLLGKKAEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+G  I V+G
Sbjct: 357 AIHEVL-NGKGHVITVVG 373


>gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 489

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 163/391 (41%), Gaps = 38/391 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           QG++ G++IDSR + P + + AI+G   DGH FI  AV +GA  VV   D         +
Sbjct: 14  QGWIRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDV 73

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V     A + L+  V        T++ +TG+ GKTT+   LT  L         + 
Sbjct: 74  PYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAGMRVGMLS 133

Query: 142 SYNNHIG---VPLTLARMPVD---------VDFGIFE--LGMSHLGEIRFLTHLVRPHIA 187
           S  N  G   VP  L  +            VD G     + +S  G ++  T  V   +A
Sbjct: 134 SVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + T +   HL     +E  A+AKA +F GL  EK G I LN DD + +++        + 
Sbjct: 194 IFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAI-LNRDDPYADVMAENC----VA 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G  ++ D + R  +    ++ + ++L  G+ +E V H  G +   N+L  +    
Sbjct: 249 PIVTYG-VRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVVAAAY 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    D     +       GR    R     G   ++D  Y   P +++  +S   Q +
Sbjct: 308 VLGVSADDIAGVIPTLPTIPGRMHVIRP--EHGPTVIVD--YAHTPDALRQILSTARQWT 363

Query: 365 P-------HGEGRRIAVLGDMCEMGELSQSF 388
                    G G R    G   EMG ++ S 
Sbjct: 364 SGRVWLVFGGRGERDR--GKRPEMGAIAASM 392


>gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
 gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
          Length = 246

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 27  IHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 76

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +  
Sbjct: 77  PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G++N+ IG+PLT+  M  D +F I E+GMS  G
Sbjct: 137 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 170


>gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B]
          Length = 471

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 193/453 (42%), Gaps = 29/453 (6%)

Query: 28  NGISIDSRSIAPQEAFFA----IKGPHYDGHDFILHAVQ--KGAGLVVVNTDMV--ASIG 79
           N  SI+  S  P    F     IK  H +  D ++  ++  K +G+++ N D++   ++ 
Sbjct: 22  NNKSIERFSSYPNCPLFRSLHFIKN-HINNKDNLISRLETYKVSGIIIDNCDLIDLKNLS 80

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S  I V  V ++  A   +    R +     + + GS GKTTTKEML   L +   T   
Sbjct: 81  SKGIGVILVKNLNKAYEDIVQLYRKQFDIPFVQVIGSSGKTTTKEMLGSILRTKLNTLVS 140

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             + N+  GV   L ++       + E GM   G I   T +++P   ++T I  AHL  
Sbjct: 141 FENLNSPSGVAYNLLKLTAKHQAAVLETGMRSKGVISRSTSIIQPDYVIVTCIHRAHLVT 200

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E I  AK+E    L     + +N DD   + L    +      + +FG SK+ D  
Sbjct: 201 VGSLENIIKAKSEFIGFLSPESLVIINGDDENCKKLPLDQYQ---GKVLTFGMSKSCDIW 257

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            ++ +    +   +   +   ++   + IG +   N L  + +   L        + L  
Sbjct: 258 AKEIQYDDFKMHFKACTRNLEIDCTINTIGIYNVLNALAAIILSLNLGFSKQEIQEGLLQ 317

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDM 378
           F P   R +  +   N   F +I++++NANP S    I+++ +I    +G+ I  VLGD 
Sbjct: 318 FKPMYNRLQVVKRNKN---FCIINDTFNANPDS---TIALVEEIQNFAQGKPIILVLGDF 371

Query: 379 ----CEMGELSQSFHIDLAEVLS---LYNISHV--WLSGFHVLALKDALPRSIHVHYSET 429
                +  E  +S H ++ +  +   LY +  +  W       A+ +  P      +++ 
Sbjct: 372 ENPNYQDTEYPESVHYEVGKKAASAMLYRLIAIGKWADSLIKGAVDNGYPIKNTGCFTKP 431

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +    F++ S+V  ++++ KSS       LIN
Sbjct: 432 -EYAIDFLKQSIVKNNIIIFKSSVHTNLTVLIN 463


>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
 gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
          Length = 484

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 159/378 (42%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++GI++DSR I P   F A+KG   DGH +I  A++KGA  VV        I +++ I V
Sbjct: 23  ISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +DV+G   KLA        SK  ++ +TG+ GKTT   +L             I + 
Sbjct: 83  NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139

Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182
            N+I             P+T    L RM  +   +   E     +    +G ++F     
Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
                + T +   HL     +E    AK   F+ L KT     N DD       +  KAK
Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLDDKNGLVMTQNTKAK 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H   ++++        +DF+ +  +   E   +++     ++EV    IG   A N+L 
Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  + ALS   P  GR    R    +G+  ++D  Y   P +++  ++
Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+G  I V+G
Sbjct: 357 AIHEVL-NGKGNVITVVG 373


>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
 gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
          Length = 480

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 49/381 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G+S DSR++ P   +F + G   DGHDFI  A++ GA + +V++  + ++ S +
Sbjct: 11  PTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGA-VCIVHSKELLNMASGA 69

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + +  V+DV  A+NK+A    A+   K  +  +TG+ GK+T   ++   ++  K     I
Sbjct: 70  VYI-RVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMIND-KTPCGYI 127

Query: 141 GSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           G+     G               +   LA M V V      L +S  G  +     +   
Sbjct: 128 GTIAIKYGDIELQPNLTTPDALFLQSKLADM-VRVGMKACALEVSSHGLAQHRVDGISFD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGI 244
            A+ T +   HL     +E    AK+ +F+ L ++ G   LN DD  +E LK  S A   
Sbjct: 187 CAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDEKYEALKDCSKA--- 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + S+G +K AD++    K  S         QG   ++V+ G  Y +  N++    + +
Sbjct: 244 -RVVSYGINKEADYRAINIKMSS---------QGTQFDLVYSGHMYPIKTNLVGNFNVYN 293

Query: 305 ILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L A         D+D  I+  S     EGR +R  C   Q +  ++D ++   P  M+ 
Sbjct: 294 LLAAVSALNETGYDLDKIIEKCSHIAQVEGRMERIDCG--QPYNVIVDFAH--TPDGMEK 349

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +     I+  G  R IAV G
Sbjct: 350 MMQFGRSITMPGH-RLIAVFG 369


>gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 252

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 33  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 87

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +   G++N
Sbjct: 88  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKTKGNFN 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  + +F I E+GMS  G
Sbjct: 148 SQIGLPLTILEMKRNTEFLILEMGMSEKG 176


>gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
          Length = 243

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 17/154 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 24  IHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 73

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VD+ L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 74  PKGVPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G++N+ IG+PLT+  M  D +F I E+GMS  G
Sbjct: 134 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 167


>gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 153

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +L  PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           ++T  L++  K     G++NNHIG+PLT+
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTI 151


>gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855]
 gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter
           ruber DSM 13855]
          Length = 543

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 141/307 (45%), Gaps = 13/307 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
           RS  +++ ITGS GKT+TK ++   L      YA   SYN  +G+ L +   +  +    
Sbjct: 191 RSDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVL 250

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E G+ + G++  L  +  P  +V+TTI  AHL      + IA+ K  + E     G  
Sbjct: 251 VLEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDRIAAEKGVLVERTAPDGPA 310

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSME 282
            LN DD     + A+  A  +  I + G   +AD      +      ++      G ++ 
Sbjct: 311 VLNADDERVAAM-AERAAGPVWRISTEGHP-DADITADDIRYDTGGTAFDVTDDTGTTVT 368

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTL 341
                +G H   N+L+ + +   +   +     A+    P E     +R  L ++G  T+
Sbjct: 369 FETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIE-----HRLQLRSRGDVTI 423

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+++N+NP   + A+ +LS++     G+R+ V   M E+G+   + + D   VL+ +++
Sbjct: 424 IDDAFNSNPVGARNAVEILSEMD---GGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDL 480

Query: 402 SHVWLSG 408
             V L G
Sbjct: 481 DLVVLVG 487


>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
 gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 159/378 (42%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++GI++DSR I P   F A+KG   DGH +I  A++KGA  VV        I +++ I V
Sbjct: 23  ISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +DV+G   KLA        SK  ++ +TG+ GKTT   +L             I + 
Sbjct: 83  NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139

Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182
            N+I             P+T    L RM  +   +   E     +    +G ++F     
Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
                + T +   HL     +E    AK   F+ L KT     N DD       +  KAK
Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLDDKNGLVMTQNTKAK 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H   ++++        +DF+ +  +   E   +++     ++EV    IG   A N+L 
Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  + ALS   P  GR    R    +G+  ++D  Y   P +++  ++
Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+G  I V+G
Sbjct: 357 AIHEVL-NGKGNVITVVG 373


>gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 252

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS+++     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 33  IHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 87

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 88  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +F I E+GMS  G
Sbjct: 148 SQIGLPLTILEMKRDTEFLILEMGMSEKG 176


>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D4]
 gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides dorei 5_1_36/D4]
          Length = 484

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 159/378 (42%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++GI++DSR I P   F A+KG   DGH +I  A++KGA  VV        I +++ I V
Sbjct: 23  ISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +DV+G   KLA        SK  ++ +TG+ GKTT   +L             I + 
Sbjct: 83  NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139

Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182
            N+I             P+T    L RM  +   +   E     +    +G ++F     
Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
                + T +   HL     +E    AK   F+ L KT     N DD       +  KAK
Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLDDKNGLVMTQNTKAK 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H   ++++        +DF+ +  +   E   +++     ++EV    IG   A N+L 
Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  + ALS   P  GR    R    +G+  ++D  Y   P +++  ++
Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+G  I V+G
Sbjct: 357 AIHEVL-NGKGNVITVVG 373


>gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 258

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 17/154 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS++I     F  I     DGH+++  ++  GA         VAS+   S    
Sbjct: 39  IHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDNGA---------VASLWKKSYGTP 88

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VDD L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 89  PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKT 148

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 149 KGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 182


>gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 455

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 202/467 (43%), Gaps = 26/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++L  I+G  I    +  ++  +I    +     +F ++    D + F      K  
Sbjct: 5   NLKEMLSIIEGKIIRGTDELLIDHAAIVPHKLKDNSLYFNMQDDPVDFNSF------KNC 58

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +V+ N++   ++ +    V  V+DV  A  +     R      ++A+TG+ GKTTTKEM
Sbjct: 59  AMVI-NSEHY-NVENSKWTVVAVEDVEKAFWRFVKYYRNLFNIPVVAVTGTCGKTTTKEM 116

Query: 126 LTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +   LS       TY  I  +  H+   L +       +  +FE  +++  ++       
Sbjct: 117 IKHILSLHFKTAATYKSINGWRMHLPYLLEIDET---TEAAVFETAVAYPEDLIESCRYF 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I +IT I   HLS  S  +   +AKAE+ EGL   GT+ LN DD     +  + +  
Sbjct: 174 KPDIGIITNIGVDHLSGCSTFDNYLNAKAEMMEGLGYRGTLILNADDKNISRIDLQPYKG 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I  IY FG SK + F+  +     +     ++ +    ++   G G H   N L  +  
Sbjct: 234 RI--IY-FGLSKKSHFRASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAIAC 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L   +  A   L+ +   E R  +    +N    T+ID+++++NP SM+AA+  L  
Sbjct: 291 THVLGLGIKEAALRLASYKHLE-RHLQVVPGVNGS--TIIDDTWSSNPTSMQAALKTLQN 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPR- 420
           +S  G  R+ A+LGDM  +    +  H ++  +     +  +   G     + + AL + 
Sbjct: 348 LS--GNKRKAAILGDMFYLYSWEKELHREIGNLAVEIGLDILLTVGDAASEIARGALEKG 405

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             S ++      D  +  I   L D  +V+VK S    F  L+N ++
Sbjct: 406 MNSENIFICADADEAYQVICPLLDDNTIVLVKKSMKVSFNNLVNKIM 452


>gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
 gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
          Length = 243

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 17/154 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS++I     F  I     DGHD++  A+  GA         VAS+   S    
Sbjct: 24  IHGVCIDSKNIKEGNLFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 73

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VD+ L AL +LA   R      +I ITGS GKTT K+++   LSS  + +  
Sbjct: 74  PKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 134 KGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 167


>gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
          Length = 526

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 24/287 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           +I +TGS GKT+ K  L   L           S+N  +GV  T+   +    +  I E+G
Sbjct: 184 VIGVTGSYGKTSVKFYLQTLLQEKYNVLVTPESFNTPMGVVRTIRGSLRSTHEIFICEMG 243

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H+G+I+ +  +V P   +IT+I P HL  F  +E I + K E+ + L   G +FLN D
Sbjct: 244 ARHVGDIKEICDIVHPDYGIITSIGPQHLETFFNMENIKNTKFELADALPDDGILFLNGD 303

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHH 286
           + + +  KAK +      ++ F +     +        Q   +  M     G +      
Sbjct: 304 NEYIQ-DKAKDYK---NKVFYFAQGSGNGYCASDIAVSQLGTEFTMTAP-DGTTENFQMR 358

Query: 287 GIGYHMAQNM---LMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLI 342
            IG H   N+   +     + I  +D+   ++ +  V H  + R          G  T+I
Sbjct: 359 LIGAHNVINVAGAIAAANTLGIPLSDLKIPVRRIQPVPHRMQMR--------EHGQVTII 410

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           D++YN+NP   KAA+  L+      +G RI +   M E+G+  + ++
Sbjct: 411 DDAYNSNPVGSKAAVETLAMF----DGIRILITPGMVELGDKEKEYN 453


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 188/448 (41%), Gaps = 34/448 (7%)

Query: 33  DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF-GVD 89
           DSR +  P E  FFA+K  + DGH +I    + G    VV +D+           F  V 
Sbjct: 30  DSRQVFFPDETLFFALKTKNNDGHRYISELYELGVRNFVV-SDLQPEWEEYEDANFLVVV 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             L AL +LA   R +    +I ITGS GKT  KE L   L           SYN+ IGV
Sbjct: 89  HTLFALQRLAAYHRNQFNVPVIGITGSNGKTVVKEWLYQVLHHDFNITHSPRSYNSQIGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++ +M      G+FE G+S   E+  L  ++ P I + T I  AH   F       S 
Sbjct: 149 PLSVWQMNSHTQLGVFEAGVSQPEEMAKLEAIINPTIGIFTNIGQAHQEGFK------SM 202

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +  E LE    +F+N D     ++  + + L  + +     S       RK    S  
Sbjct: 203 KQKCLEKLE----LFINCD----VIICEEENELVDECMEIACLSHKRLTWSRKGSNKSPL 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             M+V+  G S  + +  +G  MA    +     + +   +     A+ +  P     +R
Sbjct: 255 HIMKVEKLGNSTTIHYSILG--MASQFTIPFADNAAIENAIQVLATAIYLHLPLPDINQR 312

Query: 330 --------YRCALNQGFFT--LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R  + QG     LI+++YN++  S+  A+  L+Q +   + R++ ++ D+ 
Sbjct: 313 MADLEPVAMRLDVRQGKNNTILINDTYNSDINSLGIALDFLAQRATDSQKRKVLIISDIP 372

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           + G + +  +  LA  L L     V +  G  +   KD         ++ T D +   I 
Sbjct: 373 QSGLIPKELYY-LASNLVLNKKIDVLIGIGKEISTYKDLFKNDEMHFFNTTNDFIHSNIW 431

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S   D   +++K + S  F   IN LLE
Sbjct: 432 SDFHDM-FILLKGARSFSF-ESINKLLE 457


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 184/448 (41%), Gaps = 58/448 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S DSR  AP E F AI+    DGHD+I  A+  GA  V+      A+  +    V    D
Sbjct: 28  SYDSRLTAPGECFIAIRTARADGHDYIPAALAAGARGVLCRRPPHAADNAT---VIVCSD 84

Query: 91  VLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
               L + A + RLR+   T++A+TG +GKT  +  +   L+ +  T+    ++N+ +G+
Sbjct: 85  PQTVLLRWA-SNRLRALHPTVVAVTGGIGKTLARRAIAAVLTQLAPTFQSRRNFNSLLGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH---LSNFSGIEEI 206
           P+ LAR+     + + E    HL     L     PH+AVIT  A      L    G+  +
Sbjct: 144 PIALARLRAHDRYAVLEFAGEHLSP---LVAAFPPHLAVITPGADPQTVTLLQQHGVRVL 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           ++A A+ +      G   +   D  F          G+  I     ++    +L  +   
Sbjct: 201 SAAAADCY---TIAGEFAIRATDISF-------RRDGVTFI-----ARGPGLELPIFTPL 245

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +   L   ++     G+ YHM+   +                 +AL+   P  GR
Sbjct: 246 LGPPGVSAALAAIAV-----GLSYHMSPEPIQ----------------QALTRLEPPAGR 284

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R    +    +ID+S+NA   +M AA+  L+ +      RRIAVLG   E+  +  
Sbjct: 285 LRPLR---GKNGEMIIDDSFNATLPAMVAALQTLAALPAQ---RRIAVLGTPAELPAIDP 338

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSIHVHYSETMDGLFLFIQSSLVD 443
           +  +      +  +  ++ L G     +  A   +  +I +H  +T     + + S    
Sbjct: 339 TPMLSDLGGQAARSADYLVLKGTGAATMVHAARLVKPTIPIHVVDTNTAAQMSLPSDRGA 398

Query: 444 GDVVVVKSSNSCGFYRLINLLL--EEFP 469
           GD+V+V         +++  LL  +E P
Sbjct: 399 GDLVLVSGGAGERLEQVVAPLLADDELP 426


>gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. A1055]
 gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Kruger B]
          Length = 243

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 24  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 79  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +  I E+GMS  G
Sbjct: 139 SQIGLPLTILEMKRDTEILILEMGMSEKG 167


>gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Australia 94]
 gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
          Length = 243

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 24  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 79  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIVEGILRSTYRVHKTKGNFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +  I E+GMS  G
Sbjct: 139 SQIGLPLTILEMKRDTEILILEMGMSEKG 167


>gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
 gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
          Length = 246

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 27  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 82  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTAKDIVEGILRSTYRVHKTKGNFN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +  I E+GMS  G
Sbjct: 142 SQIGLPLTILEMKRDTEILILEMGMSEKG 170


>gi|284046367|ref|YP_003396707.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
 gi|283950588|gb|ADB53332.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
          Length = 552

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 131/316 (41%), Gaps = 34/316 (10%)

Query: 103 RLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV--PLTLARMPVD 159
           RLR  +  ++ ITGS GKTTTK  +T  L  +   Y    S+N+ +GV   +     P  
Sbjct: 182 RLRDVRPLVVGITGSYGKTTTKACVTEVLELLGPAYPTPASFNSTLGVVRAINEGLQPQH 241

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+G    G+++ L  LV P I V+T I PAHL  F  ++    AK E+ + L  
Sbjct: 242 QSF-VVEMGAYRRGDVQELCDLVHPRIGVLTAIGPAHLERFGSLDVTEQAKGELADALPA 300

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------------FQL--RKW 263
            G +F+   D    L  A++ +     +++     +AD              F L  R  
Sbjct: 301 EG-LFVTRADDERTLRVARTRSAARALLFAPAPHPDADVWAEDVRLENGRTHFTLVARAS 359

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYH--MAQNMLMTLGIV-SILTADVDTAIKALSVF 320
                          +  +V    +G H          +GI   +  ADV    +AL   
Sbjct: 360 GDGGASGDGGAAAGEQRADVRARLLGDHNVANLLAAAAVGIGHGLALADV---ARALGRV 416

Query: 321 HPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
            P +    R    +N+     +ID+SYNANP    AA+ VL     H   RR+ V   M 
Sbjct: 417 TPPD---HRLAPIVNRAAGIVVIDDSYNANPEGAAAALGVLRD---HPATRRLLVTPGMV 470

Query: 380 EMGELSQSFHIDLAEV 395
           E+G   Q  +  L E+
Sbjct: 471 ELGAREQEENRRLGEL 486


>gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 252

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 33  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 87

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 88  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIVEGILRSTYRVHKTKGNFN 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +  I E+GMS  G
Sbjct: 148 SQIGLPLTILEMKRDTEILILEMGMSEKG 176


>gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Vollum]
          Length = 243

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 24  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 79  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTAKDIVEGILRSTYRVHKTKGNFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +  I E+GMS  G
Sbjct: 139 SQIGLPLTILEMKRDTEILILEMGMSEKG 167


>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 513

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 170/430 (39%), Gaps = 57/430 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F DL+QA+   S G      V  +  DSR   P   F A++G + DGH F+  A  +GA 
Sbjct: 6   FSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAV 65

Query: 67  LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
             +V +   D+       ++P     +   AL  +A     R      II ITG+ GKTT
Sbjct: 66  AALVESWEPDLANYPAYAAVP-----NTRAALPLVAATFFGRPAEALGIIGITGTDGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------------VPLTLARM-PVDVDFG 163
           T  ++   L S       IG+    +G                 V   LA+M    VD+ 
Sbjct: 121 TSYLVDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWA 180

Query: 164 IFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + E     L +  L E  F        + V+T I   HL     IEE   AKA + E + 
Sbjct: 181 VLEATSHGLALHRLDECAF-------DVGVVTNITHEHLEFHGTIEEYRRAKARLLERVA 233

Query: 219 KTGT------IFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSW 271
             G       + LN DD   E  +A + A G   +  F  K   AD Q    +  ++ + 
Sbjct: 234 GRGPRPYPGGVVLNRDD---EGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTS 290

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +     S+ V  + IG +   N L   G+  +L    +   + L       GR +  R
Sbjct: 291 FRLTTPRGSVPVRLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMR--R 348

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L Q +  ++D  Y   P S++ ++ +L  + P   GR IAV G   E     +     
Sbjct: 349 VDLGQPYTVIVD--YAHTPDSLEKSLRLLRSLVP---GRVIAVFGSAGERDRAKRPLQGA 403

Query: 392 LAEVLSLYNI 401
           ++  L+ +++
Sbjct: 404 VSARLADFSV 413


>gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis CI]
 gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 250

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           ++G+ IDS++I     F  I     DGH+++  A+  GA    + +    S GS    IP
Sbjct: 31  IHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 85

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDD L AL +LA   R      +I ITGS GKTT K+++   L S  + +   G++N
Sbjct: 86  IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + IG+PLT+  M  D +  I E+GMS  G
Sbjct: 146 SQIGLPLTILEMKRDTEILILEMGMSEKG 174


>gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 532

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 123/283 (43%), Gaps = 11/283 (3%)

Query: 110 IIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFEL 167
           +I ITGS GKT+TK+ L   L  ++  T+      N  +G+  ++  R+     + + E+
Sbjct: 180 VIGITGSYGKTSTKDALGQLLQITLGSTFWPSKGINTDMGITRSIRERLEPLTKYAVIEM 239

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                G IR L  L  PH  +IT I  AHL  F   + I  AK+E+ + + + G +  N 
Sbjct: 240 AAYGTGSIRRLCGLTPPHAGIITGIGLAHLDRFGDQKTIYQAKSELAQAIPEEGILICNG 299

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           D+     + A+        +Y    SK + D  +   +   E +   ++ +GKS E +  
Sbjct: 300 DNPGTRQISAEFKK-QTTLLYGLDNSKRDLDCWITPLELTKEGTRFRIEWEGKSFEGITS 358

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N      +   L A  D A  ALS   P   R +  R        T I ++Y
Sbjct: 359 LYGNTSLSNCAGAFAMACALGAQPDFAAAALSTLIPVNNRLQISRDEER----TYIHDAY 414

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           N+NP    +A+ VL Q+      +RI +   M E+ E + + H
Sbjct: 415 NSNPEGFLSALHVLHQMPAR---KRILMTPGMIELAEQNLNMH 454


>gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 501

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 161/389 (41%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           I++DSR +   + F A+KG   DG  FI  A+++GAGLV+   D               +
Sbjct: 24  ITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTI------A 129
           +   S  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L         
Sbjct: 84  LDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLT 179
            S++  T     Y  I    N  G  + + R     + +  DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PNAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L TL  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTTLASLLVLGHDLQKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 488

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 155/363 (42%), Gaps = 26/363 (7%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           +DSR I   + FFA+KG H DG  FI  A   GA  VV        IG  S+PV  +D++
Sbjct: 23  LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNL 79

Query: 92  LGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-G 148
             AL  +A A    S A +  IA+TG+ GKTTT   +   ++ +    A IG+    + G
Sbjct: 80  YRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNG 139

Query: 149 V-----------PLTL-ARMPVDVDFGI--FELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +           PLTL A+    +  G   F +  S +G  +          AV T +  
Sbjct: 140 IVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTR 199

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKS 253
            HL     +E    AK  +F        +     +   +++K A+     I T+ + G  
Sbjct: 200 DHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKG-D 258

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + A       +   E    EV+ +G +  V  H +G    +N L T+G +  +  +++T 
Sbjct: 259 QPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETV 318

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K ++   P  GR +  R   + G    +D  Y+  P ++  AI  L  ++    GR   
Sbjct: 319 LKEVAKLMPPAGRMQIVR--DDHGPIFAVD--YSHTPDAVTQAIKALEGLAEARGGRIWI 374

Query: 374 VLG 376
           V+G
Sbjct: 375 VVG 377


>gi|268610479|ref|ZP_06144206.1| UDP-N-acetylmuramyl pentapeptide synthase [Ruminococcus
           flavefaciens FD-1]
          Length = 535

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 21/290 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGM 169
           + ITGS GKT+ K  L   L+S   T     S+N  +GV +T+   +    ++ I E+G 
Sbjct: 193 VGITGSYGKTSMKFYLDELLNSKYNTLKTPESFNTPMGVTITIRNYLKPTHEYFICEMGA 252

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYD 228
             + EI+ L  +  PH  +IT++ P HL  F  IE + + K E+ + ++ K G I+ N D
Sbjct: 253 RRVHEIKELCDIAEPHDGIITSVGPQHLETFGSIENVLNTKFELADCVKAKGGKIYFNGD 312

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           +   EL++ K+       +Y  G  +  D++       S  +   V    G+S       
Sbjct: 313 N---ELIRKKAPEYEGAILY--GLQEGNDYRATDISVSSRGTEFTVTAPGGESHRFSTKL 367

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCA-LNQGF-FTLIDE 344
           +G H  QN+L  +           T I    +  P K  +   +R   L++G   T ID+
Sbjct: 368 LGEHNVQNVLGAIAYAH------GTGIPLEKLTLPVKRIQAVPHRLQLLDKGNGLTFIDD 421

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +YN+NP+  +AA++VL       +  RI V   M E+G   +  + +  +
Sbjct: 422 AYNSNPSGCRAALAVLELF----DACRILVTPGMVELGAKQEELNFEFGQ 467


>gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
 gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
          Length = 543

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 13/306 (4%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S  +++ ITGS GKT+TK ++   L      YA   SYN  +G+ L +   +  +    +
Sbjct: 192 SDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVLV 251

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G+ + G++  L  +  P  +V+TTI  AHL      + IA+ K  + E     G   
Sbjct: 252 LEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLVERTAPDGPAV 311

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV 283
           LN DD     + A+  A  +  I + G   +AD      +      ++      G ++  
Sbjct: 312 LNVDDERVAAM-AERAAGPVWRISTEGH-PDADITASDIRYDTGGTAFNVTDDTGTTVTF 369

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLI 342
               +G H   N+L+ + +   +   +     A+    P E     +R  L ++G  T+I
Sbjct: 370 ETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIE-----HRLQLRSRGDVTII 424

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+++N+NP   + A+ +LS++     G+R+ V   M E+G+   + + D   VL+ +++ 
Sbjct: 425 DDAFNSNPVGARNAVEILSEMD---GGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLD 481

Query: 403 HVWLSG 408
            V L G
Sbjct: 482 LVVLVG 487


>gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
 gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
          Length = 497

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 151/366 (41%), Gaps = 46/366 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGSLSI 83
           +  DSR + P + F A +G + DG  FI  A+  GA  V+       N +   ++ +L++
Sbjct: 26  VETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPADGFNWNPAWNVPNLAV 85

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P       + A +     +R     T+I ITG+ GKT+    L  A S +    A IG+ 
Sbjct: 86  PQLRARAGIVASHAYGEPSR---AMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIGTV 142

Query: 144 NNHIGVPLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVI 189
            N     LT        PV V   + E          + +S  G  +F  + V    AV 
Sbjct: 143 GNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATAVF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           T +   HL     +EE  ++KA +F  EGL       +N DD+F   L A       +T+
Sbjct: 203 TNLTRDHLDYHGSMEEYGASKARLFHWEGLRHA---IINADDAFGRELAAGIDRQRTQTV 259

Query: 248 YSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            ++G      +++N    L   +      W EV+L+   +       G   A N+L  L 
Sbjct: 260 -TYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLL-------GRFNAANLLACLA 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            + +    +  A   LS   P  GR +R    L  G   L+   Y   P +++ A++ L+
Sbjct: 312 TLCVNGVALKDAAAVLSRIQPARGRMQR----LGGGHEPLVVIDYAHTPDALEKALATLA 367

Query: 362 QISPHG 367
           +I P G
Sbjct: 368 EIRPAG 373


>gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
 gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
          Length = 276

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 16/281 (5%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I   HL      + I  AK EIF+ L+ TG I LN DD   + L    +  GI+ +
Sbjct: 1   MITNIGLCHLEFLKSRDGILKAKTEIFDFLKPTGHIILNVDD---DKLVTVENVKGIQPM 57

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +   ++KN  +      +  +     +  +  +  V+    G+HM  N L    +    +
Sbjct: 58  FFGIENKNGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGTAVGLTYS 117

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++     +    P  GR       ++ G +T++D+ YNANP SMKA++ VL+      
Sbjct: 118 LSLEEIKAGIESLQPVSGRFH----IIDTGKYTVVDDCYNANPVSMKASLDVLTD----A 169

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIH 423
            GR++A+LGDM E+G+     H ++       N+  +     LS +   A K A P    
Sbjct: 170 LGRKVAILGDMGELGKEEVEMHREVGVYAVSKNLDLLICMGELSQYMAEAAKHAAPTKPI 229

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H+ +T + L   +   L  GD  +VK+S+  GF  ++  L
Sbjct: 230 FHF-KTKEELLQELPQILQKGDTALVKASHFMGFEDVVKEL 269


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 145/346 (41%), Gaps = 24/346 (6%)

Query: 25  GFVNGISIDSRSIAPQEAFFA-IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             ++ I ID+R I    A FA +KG   DGH F+  +   GA   +V           S+
Sbjct: 23  ALIDQIVIDTRRIYASNALFAALKGQRQDGHSFVSGS---GAKFALVEKHWEGPADGPSL 79

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VDD L A  ++A + R + +  +IA+ GS GKT  K++L   LSS     +   S+
Sbjct: 80  --LKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDLLRHLLSSSFTVASSPESF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +GVPL+L       +  I E G SH GE+  L  ++RP   ++T +   HL      
Sbjct: 138 NSQVGVPLSLLGAAKAHEQVIIEAGFSHPGEMARLCKIIRPSHIILTHVGNKHLHTIGSK 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+IA                F    D+ + LL        +   Y +  +   +     +
Sbjct: 198 EQIAQEMCH-----------FSLSSDASWTLLPKDPILSPLPKPY-YWDTPQPNLPHASF 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTADVDTAIKALSVFHP 322
            + S+   + VQ        +   +G     +++ + L    +L       + AL  + P
Sbjct: 246 HENSKA--ITVQFPKGDAHTILRPLGMSYILDLINIGLKAAYLLGVPEKQIVDALKTYQP 303

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +    + ++   +Q   T I+E+Y  +P S+  A+      SP G+
Sbjct: 304 EPMSTEIWK---SQNGATFINETYCEDPQSLDCALRRFDFHSPKGK 346


>gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 488

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 154/363 (42%), Gaps = 26/363 (7%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           +DSR I   + FFA+KG H DG  FI  A   GA  VV        IG  S+PV  +D++
Sbjct: 23  LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNL 79

Query: 92  LGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-G 148
             AL  +A A    S A +  IA+TG+ GKTTT   +   ++ +    A IG+    + G
Sbjct: 80  YRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNG 139

Query: 149 V-----------PLTL-ARMPVDVDFGI--FELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +           PLTL A+    +  G   F +  S +G  +          AV T +  
Sbjct: 140 IVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTR 199

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKS 253
            HL     +E    AK  +F        +     +   +++K A+     I T+ + G  
Sbjct: 200 DHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKG-D 258

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + A       +   E    EV+ +G +  V  H +G    +N L T+G +  +  +++T 
Sbjct: 259 QPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETV 318

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K  +   P  GR +  R   + G    +D  Y+  P ++  AI  L  ++    GR   
Sbjct: 319 LKEAAKLMPPAGRMQIVR--DDHGPIFAVD--YSHTPDAVTQAIKALEGLAEARGGRIWI 374

Query: 374 VLG 376
           V+G
Sbjct: 375 VVG 377


>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 487

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 163/383 (42%), Gaps = 37/383 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  I++DSRS++P   F A +G  +DGHDF+  A+ +GA  ++V  ++     +L 
Sbjct: 20  PSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEV-----ALD 74

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V  V  A+  L      R   +  ++ ITG+ GKTTT   +   LS   +    I
Sbjct: 75  IPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLAGRRTGLI 134

Query: 141 GSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+     G          P       L R  VD  VD  + E+    + + R      R 
Sbjct: 135 GTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRIDGTSFR- 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V T ++P HL     IE+  +AKA++F   E+T    +  D  +   L  +     +
Sbjct: 194 -IGVFTNLSPEHLDYHGTIEQYYAAKAQLFL-PERTKQAVIGTDTEWGVRLATQVRIPAV 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
               ++G +  +D+++   +     +   V + G+    +   I G H A N    + + 
Sbjct: 252 ----TYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAVAVA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  + DT  + L+  H   GR +R      Q F  ++D  Y   P S++A I+    +
Sbjct: 308 EALGIEGDTIERGLAECHQVAGRFQRIDA--GQPFTVVVD--YAHTPDSLRALIATARAL 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQ 386
           SP  +GR I V G       L +
Sbjct: 364 SP--KGRVILVAGARGRRDRLKR 384


>gi|297521770|ref|ZP_06940156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli OP50]
          Length = 127

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 3/128 (2%)

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L 
Sbjct: 2   KEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLT 61

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++  + L  +S  +
Sbjct: 62  RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VI 118

Query: 243 GIKTIYSF 250
           G + ++ F
Sbjct: 119 GSRKVWRF 126


>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 497

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 159/388 (40%), Gaps = 39/388 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN +  +SR + P   F  ++G  +D H       ++GA  ++    +      L IP+ 
Sbjct: 27  VNDVVSNSRLLKPGNLFICLQGTSFDSHLLAPELQERGAAALIAEKKIDVD---LDIPII 83

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     A   L   +      K T I +TG+ GKTT   ++   L + ++  A +G+  
Sbjct: 84  YVKSSRLAEAHLYMEINDHPYKKLTTIGVTGTNGKTTVTTLINHILETFQRKSALVGTVK 143

Query: 145 NHIGV------------PLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           N IG             P TLA   +M V+ +   F + +S  G        +R  +AV+
Sbjct: 144 NVIGDYVSTNPKNTTPGPATLAKYMKMAVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVL 203

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL   +  E+    K  IF  L+  G   +N D+     +K     L    I +
Sbjct: 204 TNVTRDHLDFHASFEDYYRTKLRIFNLLKPVGKAVVNSDNVNIGDIK-----LPRDKIIT 258

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G    +DF++   +      +  V+   G   +V    +G H A N+  T+  +  L  
Sbjct: 259 YGFGNESDFRMENLEISRTGMYFTVETPFGSKHKVYTRLVGEHNAYNVTATIATMESLNY 318

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D +  ++A+S F    GR +    A   GF  L+D  +   P +++  +    ++S   E
Sbjct: 319 DTEHILEAISTFSGVPGRFEFVEEATKYGFDVLVD--FAHTPDALEKLLKTAKKLS---E 373

Query: 369 GRRIAVLGDMCE--------MGELSQSF 388
           GR I V G   +        MGE++  F
Sbjct: 374 GRIIIVFGAGGDADKGKRPLMGEIASRF 401


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 3/193 (1%)

Query: 27  VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           ++ I+IDSR ++  E   F ++ G    G DFI   +  G    +V+         L+  
Sbjct: 27  ISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIPALIDLGVRNFIVHKGNSLKRELLAKA 86

Query: 85  VFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            F  VDD   AL ++A   R   +  +++ITGS GKT  KE L   LS   +      SY
Sbjct: 87  NFVLVDDTRKALQEIARYQRSYFEKPVVSITGSNGKTIVKEWLGQVLSQAYQVAKSPKSY 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +GVPL++  +       I E G+S  GE+  L  +++P++ + T I  AH   FS  
Sbjct: 147 NSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAALERIIQPNLGIFTNIGSAHKEGFSSQ 206

Query: 204 EEIASAKAEIFEG 216
           E     K  +F+G
Sbjct: 207 ESKILEKLSLFKG 219



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 67/124 (54%), Gaps = 5/124 (4%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID++YN + A +K A+  L+   P  + R+I +L D+ + G  +Q  + ++AE++  ++
Sbjct: 336 LIDDTYNNDLAGLKVALDFLNLQRP--KKRKILILSDLLQQGTAAQ-LYSEVAEMVKSHH 392

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +  +   G H+  L+   P+   + YS+T + L   +       D++++  +   GF R+
Sbjct: 393 LDQIIGVGQHIFQLESFFPKQF-IGYSDT-EKLLDELNPEEFSNDLILITGARPFGFERV 450

Query: 461 INLL 464
           +N L
Sbjct: 451 VNKL 454


>gi|156342934|ref|XP_001620981.1| hypothetical protein NEMVEDRAFT_v1g222497 [Nematostella vectensis]
 gi|156206509|gb|EDO28881.1| predicted protein [Nematostella vectensis]
          Length = 279

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 146/308 (47%), Gaps = 39/308 (12%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFL 225
           +G +H  EI FL  +  P    IT    AHL  F GIE +   K+E++  LEK   TIF+
Sbjct: 1   MGANHQKEIDFLCSIAEPDFGYITNFGKAHLEGFGGIEGVIKGKSELYNYLEKNEKTIFV 60

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD+   L   K+  L     YSF    ++D ++       E + M V +   ++++  
Sbjct: 61  NLDDT---LQNEKTKKL---KRYSFSTQNSSDIKI----DTIEANPM-VIIGFNNLKIHS 109

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + IG + A N+   + I      +     +A+  + P   R +     + +G   +I ++
Sbjct: 110 NLIGIYNANNINAAITIGKYFNIEDALIKEAIESYIPSNNRSQ----LITKGSNEIILDA 165

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP+SM AAI+   Q+    + +++ +LGDM E+G+ S   H  +  +L     +   
Sbjct: 166 YNANPSSMLAAITNFIQLIT--DKKKVLILGDMFELGKESIEEHKKIVTLL-----AETK 218

Query: 406 LSGFHVLAL----KDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           L  F + AL    K   P +IH H     +S+ ++      +   ++ +++++K S    
Sbjct: 219 LISFCIGALFFENKIDSP-TIHFHKDFESFSKELN------KDYSLENNLILIKGSRGMA 271

Query: 457 FYRLINLL 464
             R+++LL
Sbjct: 272 LERVLDLL 279


>gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
 gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
          Length = 488

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 168/397 (42%), Gaps = 44/397 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P   FF I+G   DGH ++  AV +GA ++V + D+  +     I  F V++ L
Sbjct: 22  DSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKDL--NYYHDKIIYFRVENTL 79

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEML--------------TIALSSIKKT 136
             LN+++        +K  II +TGS GKT    M+              TI+L    + 
Sbjct: 80  VELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYCSSGYIGTISLEYNGRK 139

Query: 137 YACIGSYNNHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             C  +    + +   L  M       V ++     L +  +  I F       +IAV+T
Sbjct: 140 EECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGINF-------NIAVMT 192

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL      E+   AK ++FE ++ TG   LN DD  F  LK  +       I ++
Sbjct: 193 NIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG----RILTY 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G    +D   +  +   + S  ++  +G +  V    I      N+L   G++  +  D 
Sbjct: 249 GIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGVLIAMGCDD 308

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              I A+    P EGR +  +    Q F  +ID  Y  + ++ +A    +  +   G GR
Sbjct: 309 KMVIDAVENVKPIEGRMELIQT--EQQFAVIID--YCQHISNYEAIFEYVDGVR-QGHGR 363

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            IAVLG     G+ +     +L ++ + Y + HV L+
Sbjct: 364 IIAVLG---APGKRNYKLRKELGQLANRY-LDHVILT 396


>gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
 gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
          Length = 255

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 20/157 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS++I     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI---ALSSIKKT 136
              +P+  VDD L AL +LA   R      +I ITGS GKTT K++  I    LSS  + 
Sbjct: 83  PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIKDIIEGILSSTYRV 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +   G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 143 HKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 179


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 158/384 (41%), Gaps = 64/384 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI  DSR + P   F AIKG   DGHDFI   ++K   L+V   +           +F
Sbjct: 26  VTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVIEKKPALIVAEEERPG--------IF 77

Query: 87  GVDDVLGALNKLAVAARLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           GV+ +L   ++ A+A   R+       K ++I +TG+ GKTT   ++T  L S       
Sbjct: 78  GVNHLLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGKTTVTHLVTSLLESFGYKTGL 137

Query: 140 IGSYNNHIG---VPLT--------LARM-----PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+  N IG   +P+T        L R+       +V     E+    L + R L   + 
Sbjct: 138 IGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSHALVQKRVLG--ID 195

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFE-LLKAKSH 240
               V T +   HL     +E   +AK E+F+ L +   +   +N DD + + +LK  +H
Sbjct: 196 FKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKDDFYGQRILKEVAH 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   ++G  + AD   +  +  +  +   +  Q +   V    +G     N+L  +
Sbjct: 256 PF-----VTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLLGLFNVYNILAAV 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE--------SYNANPAS 352
           G +  L   +   +K L + +P  GR            F LIDE         Y   P  
Sbjct: 311 GTLLTLGFSLPDIVKNLPLLNPVPGR------------FELIDEGQDFAVIVDYAHTPDG 358

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++  +     I+P   GR IAV G
Sbjct: 359 LENILKSARAITP---GRVIAVFG 379


>gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
 gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
          Length = 178

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 4/148 (2%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           F ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G 
Sbjct: 22  FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANGC 80

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  D+V +   L  PV  V D L A+ +LA     + +  +IA+TGS GKTTTK++
Sbjct: 81  QAAFWGQDLVDAPQQL--PVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDL 138

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +   LS    TY   G+YNN IG+P T+
Sbjct: 139 IAAVLSEKFVTYKTQGNYNNQIGLPYTI 166


>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
 gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
          Length = 487

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 152/373 (40%), Gaps = 44/373 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+++DSR +     F A+KG   DGH FI  A++KGA  ++V+  + A   +  +   
Sbjct: 24  INGVNMDSRLVEKGNLFVAVKGTQTDGHAFIAGAIEKGASAILVSEPIPAETPT-DVTFV 82

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ K+A         +  ++ +TG+ GKTT   +L    + +        +  
Sbjct: 83  RVADTEDAIGKVATTFYGDPTQRLKLVGVTGTNGKTTIATVLYHLFTELGFKCGLCSTVC 142

Query: 145 NHIGV-----------PLTLARMPVDV-----DFGIFELG-----MSHLGEIRFLTHLVR 183
           N+IG            P+TL ++  ++     ++   E          +G + F      
Sbjct: 143 NYIGTHAVPTEHTTPDPVTLNKLLGEMADEGCEYAFMECSSHAIHQKRIGGLDFAG---- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ T +   HL      E    AK   F+GL K      N DD    ++   + A  
Sbjct: 199 ---ALFTNLTRDHLDYHKTFENYRDAKKAFFDGLSKQAFAITNADDKNGPIMVQNTKA-- 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I ++     AD++ +  ++  E   +E+       EV    +G     N+L   G  
Sbjct: 254 --RIKTYSTRAAADYKGKILEESLEGMLLEIN----GREVSVRFVGRFNVSNLLAVYGAA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D  ++ LS  HP  GR +  R    +G   +ID  Y   P ++   +S + +I
Sbjct: 308 IELGVSPDETLRVLSSLHPVNGRFEAIRSP--KGVSAIID--YAHTPDALANVLSSIDEI 363

Query: 364 SPHGEGRRIAVLG 376
             HG+ + I V G
Sbjct: 364 V-HGKAQVITVCG 375


>gi|302672146|ref|YP_003832106.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
 gi|302396619|gb|ADL35524.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
          Length = 539

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 34/296 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFEL 167
           II ITGS GKT+ K  LT  LS   +      SYN  +G+  T+    MP    F + E+
Sbjct: 188 IIGITGSFGKTSVKYYLTTLLSEGYRVLMTPESYNTPMGIVRTIREHLMPTHEIF-VCEM 246

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---- 223
           G  HL +I+ +T +V P   ++T+I   HL  F  ++ I S K E+ + +++        
Sbjct: 247 GARHLHDIKEITDIVHPDDGILTSIGHQHLETFHSLDNIISTKYELLDAVDEKMKADGKK 306

Query: 224 -----FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQ 277
                F+N D+   E+++A    +  +   ++G S+  D++    K   S  S+      
Sbjct: 307 DAHLKFVNGDN---EIIRAN---MKYEDAITYGLSEGCDYRATDIKVSGSGTSFTVTAPN 360

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVS---ILTADVDTAIKAL-SVFHPKEGRGKRYRCA 333
           G++ E     +G H  +N++  +   +   I    +  A++ L SV H  E         
Sbjct: 361 GETCEFATKLVGRHNVENIVGAIAAANSLGIPMTKLRIAVRRLASVPHRLE--------L 412

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +  G  +++D++YN+NP   K A+  L       +  +I V   M E+GE    ++
Sbjct: 413 IKHGPVSILDDAYNSNPNGAKVALETLDLFE---DQVKILVTPGMVELGEKEDEYN 465


>gi|309806975|ref|ZP_07700957.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166595|gb|EFO68792.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 270

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 18/269 (6%)

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRK 262
           ++IA AK EI + L++ G    N D+    LL+A++  L  ++  + F    N+   +  
Sbjct: 13  DKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQTLNQLQATFGF----NSTDTIYA 65

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFH 321
               S        +    ++     IG H   N L  + +       DV+ A +AL+ F 
Sbjct: 66  TNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA-QALANFV 124

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIAVLGDM E+
Sbjct: 125 PTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLEL 181

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLF 436
           G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  + MD +   
Sbjct: 182 GAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMIND 241

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           ++  +   D+V++K S+     +++  LL
Sbjct: 242 LREDIKPHDIVMLKGSHGMHLEKVLERLL 270


>gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 526

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 12/276 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           +I ITGS GKT+ K  +   LS+         S+N  +GV  T+  ++    +  I E+G
Sbjct: 181 VIGITGSFGKTSVKHFMHAVLSAKFNVLMTPESFNTKLGVTRTIREKLKPYHEVFIAEMG 240

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G++  +  LV     V+T I   HL  F  ++ I   K EI E L   G   LN D
Sbjct: 241 AKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNIKKTKYEIIETLPDNGVGVLNKD 300

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           D   E + + +       IY    + + D + +     S+     V L+ G++       
Sbjct: 301 D---ENIMSYAPYQKRDVIYYGIDAPDVDIRAKDISYSSKGMDFTVVLKNGETQTFRTKL 357

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N+L  + I   L   +   +K +        R +  R     G  T+ID+S+N
Sbjct: 358 LGKHNVYNILAAIAIGLQLGMKLSEMVKPIRSLDAVPHRLELKRST---GNITIIDDSFN 414

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +NP   K A+ VL  +    EG R+ V   M E+GE
Sbjct: 415 SNPVGSKMAVDVLGSM----EGYRMLVTPGMIELGE 446


>gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 488

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 175/395 (44%), Gaps = 40/395 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P   FF I+G   DGH ++  AV +GA ++V + ++  +     I  F V++ L
Sbjct: 22  DSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKNL--NYYHDKIIYFRVENTL 79

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNH 146
             LN+++        +K  II +TGS GKT    M+  A++    +   IG+    YN  
Sbjct: 80  VELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYCSS-GYIGTISLEYNGR 138

Query: 147 -----IGVP--LTLARMPVDVDF-GIFELGM---SH---LGEIRFLTHLVRPHIAVITTI 192
                   P  L L R   +++  G+  + M   SH   LG +  +      +IAV+T I
Sbjct: 139 KEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGINF----NIAVMTNI 194

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL      E+   AK ++FE ++ TG   LN DD  F  LK  +       I ++G 
Sbjct: 195 GAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG----RILTYGI 250

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              +D   +  +   + S  ++  +G +  V    I      N+L   G++  +  D   
Sbjct: 251 EIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGVLIAMGCDDKM 310

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            I A+    P EGR +  +    Q F  +ID  Y  + ++ +A    +  +   G GR I
Sbjct: 311 VIDAVENVKPIEGRMELIQTE--QQFAVIID--YCQHISNYEAIFEYVDGVR-QGHGRII 365

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           AVLG     G+ +     +L ++ + Y + HV L+
Sbjct: 366 AVLG---APGKRNYKLRKELGQLANRY-LDHVILT 396


>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
          Length = 483

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 39/393 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    DLL+ IQ   I       + G++IDSR I     F A++G   DGH +I  A++K
Sbjct: 2   LMKLSDLLKTIQPVHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYIPAAIEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GA + V+  D+     S  I    V D   A+ K+A A      SK  ++ +TG+ GKTT
Sbjct: 62  GA-IAVLCEDLPKEQKS-GITYVQVKDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIF 165
              +L             I +  N+I             P+TL R+  ++      +   
Sbjct: 120 IATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R     ++    + T +   HL     +E    AK + F+ + K+     
Sbjct: 180 EVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLT 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + +     +Y++     +DF+     +  E  +  + L   + E+  
Sbjct: 238 NLDDKNGLVMTQNTRS----RVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAV 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L   G   +L    +  + ALS  HP  GR    R    +GF  ++D +
Sbjct: 290 RFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--KGFTAIVDYA 347

Query: 346 YNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
           +  +     A ++VL+ I     G+G+ I V+G
Sbjct: 348 HTPD-----ALVNVLNAIHGVLEGKGKVITVVG 375


>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 487

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 159/379 (41%), Gaps = 46/379 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G+  DSR I P + +F + G  +DGH F+   V+KGA  +V   D+        
Sbjct: 11  PDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKDI--ETMHKG 68

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +    V++V   LN +A         + T+  +TG+ GK+T   ++    S  K     I
Sbjct: 69  VAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIKDVYSHFKPC-GYI 127

Query: 141 G----SYNNHIGVPLTLA---------RMPVDVDFGI--FELGMSHLGEIRFLTHLVRPH 185
           G    SY + + +P +L           M   VD+G+    L +S  G        V   
Sbjct: 128 GTISISYGD-VTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGLEMGRVQSVDFD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T +   HL     +E    AK ++F  L+  G   +N DD F     AK    G K
Sbjct: 187 VAVFTNLTYDHLDFHGTLENYFEAKHKLFLQLKSDGVAVINVDDPF-----AKRMVAGCK 241

Query: 246 T-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I S+G + +AD++            + +   G + +++HHG  Y +  N++    I +
Sbjct: 242 AHIVSYGVTADADYR---------GDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYN 292

Query: 305 ILTA-----DVDTAIKALSVFHPK--EGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +L A     +   A+K +  +  +  +  G+  R    Q F  ++D  +   P  M+   
Sbjct: 293 LLGAIAAMCESGVALKEIVPYLSELTQVDGRMERIDEGQAFNVIVD--FAHTPDGMEKVF 350

Query: 358 SVLSQISPHGEGRRIAVLG 376
              + I+P G    IAV G
Sbjct: 351 EFANSITPDGNA-IIAVFG 368


>gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella kingae ATCC 23330]
          Length = 491

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 156/367 (42%), Gaps = 59/367 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------------M 74
           DSR I P + F A +G + DG ++I  A++KGA  V  + D                  +
Sbjct: 29  DSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPIAEL 88

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               G L+  V+G  +V G+LN             II +TG+ GKT+  + L  A+  ++
Sbjct: 89  RQRAGILANSVYG--NVSGSLN-------------IIGVTGTNGKTSITQWLAQAIDILE 133

Query: 135 KTYAC--IGSYNNHIGVPLT----LARMPVDVDFGIFEL---GMSHL-------GEIRFL 178
              AC  IG+  N     L         PV V   + +    G SH+       G  +F 
Sbjct: 134 NKSACAIIGTVGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFR 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLK 236
            + V    A+ T +   HL   + +EE   AKA +F  +GL+      +N DD F   L 
Sbjct: 194 VNGVPFQTAIFTNLTRDHLDYHNSMEEYGEAKARLFHWQGLQNA---IINSDDEFGAKLV 250

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+     +  +YS+G +++AD ++ ++   ++   + +Q    +  V    +G   AQN 
Sbjct: 251 AELKQSSLH-VYSYGFNEHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNF 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              LG +         A+KAL+      G   R  C + +    L+   Y   P +++ A
Sbjct: 310 AAALGALCAEGYAFQAALKALAQIRAATG---RMDCIIREN-KPLVVVDYAHTPDALEKA 365

Query: 357 ISVLSQI 363
           +S L +I
Sbjct: 366 LSTLREI 372


>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 481

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 157/376 (41%), Gaps = 32/376 (8%)

Query: 22  VPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           V Q F V GI+ D+R + P + F  IKG   DGH F   A + GA  +V   ++     +
Sbjct: 9   VEQDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCEYEL----EN 64

Query: 81  LSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           ++IP   V D    L +LA  +  +   K  +  +TG+ GKTTT  +L   L+  +    
Sbjct: 65  IAIPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEGHVG 124

Query: 139 CIGS----YNNHIGVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPH------ 185
            IG+    Y NH   P      P+ +      + E G+  +  I   +H +  H      
Sbjct: 125 YIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVA-IEVSSHALELHRVDYCQ 183

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A+ T + P HL     +++   AK ++FE L   G   +N DD + E L  +     
Sbjct: 184 FKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNRLKE-S 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +Y++G   +ADF+       S  +  ++       EV    +G     N L  +   
Sbjct: 243 QTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMASA 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLS 361
              +  ++  I  +    P +GR +     +N+G  F  ++D  Y   P  ++  +  ++
Sbjct: 303 YSASMPMEQIIALIKTLSPVDGRME----IINEGQDFTVIVD--YAHTPDGVEKVLEFVT 356

Query: 362 QISPHGEGRRIAVLGD 377
            I  +G    I   GD
Sbjct: 357 GIKQNGVKVVIGCPGD 372


>gi|228933512|ref|ZP_04096365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826241|gb|EEM72021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 270

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 44/292 (15%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +HL      +EIA AK EI +GL + G    N D+        K+ ++  KT 
Sbjct: 1   MITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLSR-NNKTSSVNCKT- 58

Query: 248 YSFGKSKNADF-----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY----HMAQNMLM 298
             FG+    D      QL ++              G   ++ H  I Y    H   N+  
Sbjct: 59  --FGEKDTNDLFPTNVQLDEY--------------GVHFKLNHTKIQYDVPLHGKHNIFN 102

Query: 299 TL-GIV-----SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           T+ GI       + T  +  A++ +++         R++    +  FT+I++++NA+P+S
Sbjct: 103 TIVGIAVGQFYKVPTEKIQEALQQINITQM------RFQFLTAKIGFTIINDAWNASPSS 156

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           MKAAI  L +++ +   ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G    
Sbjct: 157 MKAAIETLQKLNAYK--KKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAK 214

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461
            + +   ++ H+   ++ D      +  L      DVV++K S      +++
Sbjct: 215 FVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEQIV 266


>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
 gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
          Length = 484

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 149/374 (39%), Gaps = 47/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI IDSR + P   F AIKG   DGH +I  A++ GA  +V   + +       +   
Sbjct: 23  ITGIQIDSRLVGPGHLFVAIKGTQTDGHAYIQKAIENGACGIVC--EQLPEEIRPEVTYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + D  GA+ KLA A      SK  +I +TG+ GKTT   +L             + +  
Sbjct: 81  RLADTEGAVGKLATAFYGDPTSKLDLIGVTGTNGKTTIATLLYKMFRQFGYKVGLLSTVC 140

Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I             P+TL R+          +   E+    + + R     +R    +
Sbjct: 141 NYIDDEAIPADHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAIAQRRIAG--LRFAGGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALGI 244
            T I   HL      E    AK   F+ L K+     N DD   +++    KA+  A  +
Sbjct: 199 FTNITRDHLDYHKTFENYLKAKKAFFDNLPKSAFALTNLDDKNGKVMVQNTKARIAAYSL 258

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+  F              +  E  +  + L   + EV    IG   A N+L   G   
Sbjct: 259 RTLCDF------------KGKVLEDGFDGMLLDINNREVNVRFIGRFNASNLLAVYGAAC 306

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  + ALS   P  GR    R    +G+  ++D ++  +     A ++VL+ I 
Sbjct: 307 LLGKPSEEVLIALSTLCPVAGRFDALRS--RRGYTAIVDYAHTPD-----ALVNVLNAIH 359

Query: 365 P--HGEGRRIAVLG 376
               G+GR I V+G
Sbjct: 360 EVLRGQGRVITVVG 373


>gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 500

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 154/382 (40%), Gaps = 47/382 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           +N IS DSR I   + F A+ G   DGH F+  A+  GA  VVVN  +D+        I 
Sbjct: 22  INNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVAVVVNSSSDVPCLAKYPDIQ 81

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML---------TIALSSI 133
           V  V+D   AL ++A     R      ++ ITG+ GKTTT  +L            L S 
Sbjct: 82  VIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTTTATLLYKLFLGMGFGAGLIST 141

Query: 134 KKTYACIGSYNNHIGVP--LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186
            K Y C+         P  L   R+  D+     D+   E+      + R      R   
Sbjct: 142 IKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFMEVSSHATVQQRIAGLTFRG-- 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGI 244
           AV T +   HL     ++    AK   F+ L +T     N DD    F L   K+     
Sbjct: 200 AVFTNLTQDHLDYHKTMDNYRDAKKLFFDHLPQTAFALTNADDRNGNFMLQNTKAQR--- 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
              Y++     ADF+ +  +   E    Q    V  +GK   EV    +G   AQN+   
Sbjct: 257 ---YTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVSTPFVGSFNAQNLTAV 313

Query: 300 LGIVSILTA----DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            G  ++L      D  T +  LS   P  GR +  R A   G   ++D  Y   P ++K 
Sbjct: 314 FGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMA---GISAIVD--YAHTPDALKN 368

Query: 356 AISVLSQI-SPHGEGRRIAVLG 376
            +S ++ + SP  + R + V+G
Sbjct: 369 VLSTINDVKSP--DSRVVTVVG 388


>gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
 gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
          Length = 493

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 166/402 (41%), Gaps = 54/402 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++G +I I     + G+  DSR I P + FFA KG   DG  FI  A++KGA  ++
Sbjct: 3   LSQLLRGMNISIATDPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAAAIL 62

Query: 70  VNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTK 123
           V  D   +I   S SIP+  +  +   L  L  AAR     +    +I ITG+ GKT+  
Sbjct: 63  VEPDENYTIHLKSSSIPIIALHHLTSQLGSL--AARFYGYPSRYLPVIGITGTNGKTSCT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFG--------------IFEL 167
             L  +L  ++++   IG+  N     L  A++  P  ++                + E+
Sbjct: 121 HFLADSLQKLQRSCGVIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVVMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R   +     +A +T +   HL     ++  A AK   FE L     I LN 
Sbjct: 181 SSHRLAQKRL--NGTEFSVAALTNLTRDHLDYHKTMDAYAKAKRSFFE-LPGVQHIVLNA 237

Query: 228 DDSFFEL-LKAKSHALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEV 274
           DD + +L L      L I T YS  +             K  DF  +  +   +  W +V
Sbjct: 238 DDPYAQLWLTEFEKQLPIST-YSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDV 296

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            ++ + +      +G     N+L+ L ++  L   +    + LS     +GR + +R  +
Sbjct: 297 FIENQFL------MGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFR--V 348

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                 ++D  Y   P +++    VL  +  H  G+   + G
Sbjct: 349 KGKAIVVVD--YAHTPDALQ---QVLQALRSHCRGQLYCLFG 385


>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
 gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
          Length = 483

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           + GI+IDSR I P + F A+KG   DGH FI  A++ GA  V+   DM  +   G   + 
Sbjct: 23  ITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLCE-DMPENTVEGVTYVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  L       SK  ++ +TG+ GKTT   +L      +      + +  
Sbjct: 82  VASTEDAVGPVATL-FHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVC 140

Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N+I    +P              L RM     ++   E     +    +G ++F   L  
Sbjct: 141 NYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIGGLKFTGGL-- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   HL      E   +AK   F+GL K      N DD    ++     A  
Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNADDKNGMVMVQNCKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLM 298
             TI ++     ADF+ R          +E   +G  +EV  H +G          N+L 
Sbjct: 252 --TIKTYSTRTMADFRAR---------IIECHFEGMYLEVDGHEVGVQFIGKFNVSNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  +  +S      GR +  R A  +G   +ID  Y   P +++  +S
Sbjct: 301 VYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSA--EGVTAIID--YAHTPDALENVLS 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+GR I V G
Sbjct: 357 AIHEVL-NGKGRVITVCG 373


>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
 gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
          Length = 483

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           + GI+IDSR I P + F A+KG   DGH FI  A++ GA  V+   DM  +   G   + 
Sbjct: 23  ITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLCE-DMPENTVEGVTYVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  L       SK  ++ +TG+ GKTT   +L      +      + +  
Sbjct: 82  VASTEDAVGPVATL-FHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVC 140

Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N+I    +P              L RM     ++   E     +    +G ++F   L  
Sbjct: 141 NYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIGGLKFTGGL-- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   HL      E   +AK   F+GL K      N DD    ++     A  
Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDKNGMVMVQNCKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLM 298
             TI ++     ADF+ R          +E   +G  +EV  H +G          N+L 
Sbjct: 252 --TIKTYSTRTMADFRAR---------IIECHFEGMYLEVDGHEVGVQFIGKFNVSNLLA 300

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L    +  +  +S      GR +  R A  +G   +ID  Y   P +++  +S
Sbjct: 301 VYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSA--EGVTAIID--YAHTPDALENVLS 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++  +G+GR I V G
Sbjct: 357 AIHEVL-NGKGRVITVCG 373


>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 496

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 178/436 (40%), Gaps = 51/436 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L A+    +   P   V GI+ DSR++ P + F  I G H D H FI  A+++GA  VV
Sbjct: 1   MLSALDPVQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVV 60

Query: 70  VNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKA-TIIAITGSVGKTTTK 123
                 +   IG+  +P     D   AL+  A+A R     S+A  ++ +TG+ GKTTT 
Sbjct: 61  TQRPWAVPTGIGAAVVP-----DARLALS--ALADRFYGHPSRALRMVGVTGTNGKTTTA 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV-------------PLT----LARMPVDVDFGIFE 166
            ++     +  K    IG+    +G              P T    LA M     +G   
Sbjct: 114 FLVEAIARTAGKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVM 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH  E R   H  R  +AV T +   HL     +E   +AKA +F GL+      +N
Sbjct: 174 EVSSHALEQRRTDH-CRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAAAVVN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH 285
            DD +   L A+    G++T+ ++G S+ AD +          + +  +   G++     
Sbjct: 233 IDDPYGRRL-AEEIPAGVRTL-TYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAP 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G +   N +  +G    L   +  A+ AL       GR +  R    Q F  ++D  
Sbjct: 291 HLFGTYNVSNAMAAVGAGLALGFSLQDAVAALGTAKGAPGRFE--RIDEGQDFTVVVD-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P   +  +S +++I   G  R I V G     G+   S   D+  +   Y      
Sbjct: 347 YAHTPDGFEKLLSDVARIKEPGS-RVIMVFG---SAGQRDPSKRPDMGRIAGEY------ 396

Query: 406 LSGFHVLALKDALPRS 421
                VL L +  PR+
Sbjct: 397 ---CDVLVLTEEDPRT 409


>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 486

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 169/403 (41%), Gaps = 60/403 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I+ DSR     + F  +KG   DGH +I  A++ GA ++V+  D+   I   +I + 
Sbjct: 23  VNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENGAKVIVIQDDI--EIKDENITII 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             +D   AL  +         SK  II +TG+ GKTTT  M+   L    K    IG+  
Sbjct: 81  KCNDTRKALALMGANYYDNPSSKIKIIGVTGTNGKTTTAFMIKHILEESNKKVGLIGTIA 140

Query: 145 NHIG---------VPLTLARMP-----VD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N IG          P +L         VD  V++ + E+    L   R   + +   + +
Sbjct: 141 NFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVMEVSSHSLALDR--VYGIEFQVGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E    AK ++F   E++    +N DD++   + +  + L    IY
Sbjct: 199 FTNLTRDHLDFHKTFENYYKAKFKLF---ERSRIKIVNVDDNYGRQVISDLNNLKCDDIY 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---- 304
           SF     +DF+    +  S +   ++ L+     V++    Y    N+   LG ++    
Sbjct: 256 SFSVKSISDFKAFDEEMGSREIKFKLNLKEDEQFVLNIPGEY----NIYNALGAIAACFK 311

Query: 305 --ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +   D+ + I+ + V     GR +R     N G+  +ID  Y   P  ++   ++L  
Sbjct: 312 LGMPIKDIKSGIENVVVL----GRCERVAKEYNLGYEIIID--YAHTPDGLE---NILKT 362

Query: 363 ISPHGEGRRIAVLGDMC----------EMGELSQSFHIDLAEV 395
                +GR I+V G  C          EMG++S     D+A++
Sbjct: 363 AKAFTKGRLISVFG--CGGDRDKVKRPEMGKIST----DIADI 399


>gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli Kim 5]
          Length = 81

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
          M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+P EAFFAIKG   DGHD+   A
Sbjct: 1  MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMA 59

Query: 61 VQKGAGLVVVNTDMVASIGSLS 82
          +  GA L+VV+   + ++G L+
Sbjct: 60 MANGASLLVVSEARLPAMGRLT 81


>gi|88608103|ref|YP_506362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
 gi|88600272|gb|ABD45740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
          Length = 325

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 15/296 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S++   +   E F      ++D   FI  A   GA  ++   D+      + IP+  VDD
Sbjct: 32  SMNCEKVGKGEIFVIADAKNHDIPCFIETAYLNGASAIITKKDIACP--KIPIPIIRVDD 89

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L A+ KLA       + T+I ITGS  KT TK ++   L +  KT        N  G  
Sbjct: 90  PLRAMEKLAAILIRNYQPTVIGITGS-SKTLTKNLIVTLLKNYGKTCYNEDGTGNFAGFT 148

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L +        F + E+  +  G +     +  P + VIT I      +    E I   K
Sbjct: 149 LGILNADFPCKFLVLEVDTTCSGNVDLFNQITLPKVGVITDIRFHQDRSIDLRELIVMEK 208

Query: 211 AEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           A+IF+     G I  LN+D  + ELL  ++      TI SFG+++N D QL      +  
Sbjct: 209 AKIFQN----GCIAVLNFDTPYTELLLQEARK-NKATIISFGRNENCDVQL--LSHSNNT 261

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPK 323
           + +++    K+ +++ H    H+   +   +G++  L   V  ++    LSVF  K
Sbjct: 262 AVVKIGRSQKTCKLLDH--NQHLKYVVPPMIGVMKALKLKVTQNSLNNTLSVFQSK 315


>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 484

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 163/369 (44%), Gaps = 34/369 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR +   + F  IKG   DGH +I  A++ GA ++++  D+   + + +I V 
Sbjct: 23  ISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENGASVIIMQDDI--EVVNKNISVI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  + +        K  II ITG+ GKTTT  M+   L S  K    IG+  
Sbjct: 81  KVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGKKVGLIGTIA 140

Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P +L    +        V++ + E+  SH  E+  + + V   + +
Sbjct: 141 NYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVS-SHSLELDRV-YGVDFEVGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   ++K ++F   +++    +N DD++ + +    + L  K IY
Sbjct: 199 FTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIINNDDNYGKQVIKDLNKLKAKNIY 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            +   ++++F+    K  S+    +V L+ K  E +    G +   N L  +G    L  
Sbjct: 256 EYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILSIPGEYNIYNALGAIGACYKLNI 314

Query: 309 DVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++     ++ V  P  GR +R     N  +  +ID  Y   P  ++   ++L       
Sbjct: 315 PMEAIKNGINKVIVP--GRCERTATNYNLPYDIIID--YAHTPDGLQ---NILETARGFT 367

Query: 368 EGRRIAVLG 376
           +GR IA+ G
Sbjct: 368 QGRLIAIFG 376


>gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
 gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
          Length = 535

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 23/293 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELG 168
           I ITGS GKT++K +L   LS    +     S+N  +G+ +T+     P    F I E+G
Sbjct: 192 IGITGSYGKTSSKNILQQILSEKFYSLPTPASFNTPMGITITIREQLKPTHEVF-ICEMG 250

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H+G+I  L   V+P I ++T+I P HL+ F   E I + K ++ E L  TG   LN D
Sbjct: 251 ADHVGDIEQLMDFVQPQIGLVTSIGPQHLNTFGSQENIVTEKMKMIEKLPVTGFGVLNKD 310

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           +        K+       I  +G + ++ D++        + S  ++   +G  +     
Sbjct: 311 NELIRNYYIKNKC----PIAWYGIEQEDVDYRAVNISFGPQGSSFDIHTREGADIPFKTR 366

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDES 345
            +G H   N+L  + +   L    +    A++     + R   +R  + +   +T ID++
Sbjct: 367 LLGEHNIANILAAVAVGRHLGVSWEQLQSAVA-----QVRYVEHRLEVKKINGYTFIDDA 421

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAE 394
           +N+NP     ++ VL  +     G R  V   M ++G    E+++ F + + +
Sbjct: 422 FNSNPVGSAMSLQVLKTMP----GTRFIVTPGMIDLGPRQHEINKQFGMKMKD 470


>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
 gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
          Length = 493

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 174/412 (42%), Gaps = 58/412 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHD+   AV+ GA  +V        +    +PV 
Sbjct: 26  ITSIEMDSREVKEGSLFVCIKGYTVDGHDYAEKAVKSGAAAIVAE----HPLNITDVPVI 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V     AL ++A A   +   K  +I ITG+ GKT+T  M+   +   +K    IG+  
Sbjct: 82  IVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMY 141

Query: 144 ----------NNHIGVPLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVRPHI 186
                      N     +TL +     +  DVD  I E+     HLG +    H     I
Sbjct: 142 MKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRV----HGCDYDI 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237
           AV T +   HL   + +EE   AK+ +F  L       K     LN DD   S+FE + A
Sbjct: 198 AVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEASSYFEKVTA 257

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    + ++   + AD   +  +   + +  ++     + +V    +G     N+L
Sbjct: 258 AE-------VMTYALEQKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNIL 310

Query: 298 --MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +++GIVS LT   +T + A+      +GR +   C  +Q F  ++D  Y   P S++ 
Sbjct: 311 AAVSVGIVSGLT--FETIVSAIEELEGVKGRFELVNC--DQDFPVIVD--YAHTPDSLEN 364

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            ++   +++   EG+   V+G  C  G+  ++    +A++   Y    V+ S
Sbjct: 365 VLTTCRELT---EGKIFCVIG--C-GGDRDKTKRPQMAQIAVKYADEPVFTS 410


>gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 502

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 162/364 (44%), Gaps = 37/364 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIGSLSI 83
           + G+S +SR+I P + F A+ G   DG  +I  A+  GA +++  TDM    A +  L  
Sbjct: 22  IGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGARVIL--TDMRPLEAPLDDLDT 79

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V++    L K A     +    I A+TG+ GKT+T + L    + +    + IG+ 
Sbjct: 80  PIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTDFLRQLWTRVTWQASSIGTL 139

Query: 144 -------NNHIGVPLTLARM--PVDVDF-----GIFELGMSHL-------GEIRFLTHLV 182
                      G  L L ++  P  V        + + G++HL       G ++     +
Sbjct: 140 GVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDAGVTHLALEASSHGLVQQRLDGL 199

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSF----FELLKA 237
             HIA  T +   HL + + +E    AK+ +F + L   G   +N DD +     ++L A
Sbjct: 200 NIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMHAGAAIINIDDPYGRRLCDMLTA 259

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  A  I  I +FG + +ADFQ+ K         M V+  GKS  +     G   A N L
Sbjct: 260 QGDARQI-VIQTFGFADDADFQIEKITPIDNILDMSVKHDGKSWHIPLAMSGTFQAVNAL 318

Query: 298 MTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            T GI++ ++   +  ++  L+   P  GR +       QG   ++D  +   P +++AA
Sbjct: 319 -TAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQTV-TGHPQGAQIVVD--FAHTPDALRAA 374

Query: 357 ISVL 360
           +  L
Sbjct: 375 LEAL 378


>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 484

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 34/369 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR +   + F  IKG   DGH +I  A++ GA ++++  D+   + + +I V 
Sbjct: 23  ISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENGASVIIMQDDI--EVVNKNISVI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  + +        K  II ITG+ GKTTT  M+   L S  K    IG+  
Sbjct: 81  KVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGKKVGLIGTIA 140

Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P +L    +        V++ + E+  SH  E+  + + V   + +
Sbjct: 141 NYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVS-SHSLELDRV-YGVDFEVGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   ++K ++F   +++    +N DD++ + +    + L  K IY
Sbjct: 199 FTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIINNDDNYGKQVIKDLNKLKAKNIY 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            +   ++++F+    K  S+    +V L+ K  E +    G +   N L  +G    L  
Sbjct: 256 EYSIREDSNFKAFDEKMGSKNISFKVNLE-KEEEFILSIPGEYNIYNALGAIGACYKLNI 314

Query: 309 DVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++   + ++ V  P  GR +R     N  +  +ID  Y   P  ++   ++L       
Sbjct: 315 PMEAIREGINKVIVP--GRCERTATNYNLPYDIIID--YAHTPDGLQ---NILETARGFT 367

Query: 368 EGRRIAVLG 376
           +GR IA+ G
Sbjct: 368 QGRLIAIFG 376


>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 482

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 39/388 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +LL+ IQ   +    +  + G++IDSR +A    F A++G   DGH +I  A++KGA + 
Sbjct: 5   ELLKTIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKGA-IA 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
           V+  DM     + +I    V D   A+ K+A A      SK  ++ +TG+ GKTT   +L
Sbjct: 64  VLCEDMPEE-PTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170
                        I +  N+I             P+TL R+  ++      +   E+   
Sbjct: 123 YNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R     ++    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 183 SIAQQRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+     +  E  +  + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----RVYTYSLRSLSDFK----GKILESHFEGMLLDFNNRELAVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D ++  + 
Sbjct: 293 FNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSIRSP--KGITAIVDYAHTPD- 349

Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376
               A ++VL+ I     G+G+ I V+G
Sbjct: 350 ----ALVNVLNAIHDVLEGKGKVITVVG 373


>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
 gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
          Length = 493

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 174/412 (42%), Gaps = 58/412 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHD+   AV+ GA  +V        +    +PV 
Sbjct: 26  ITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKAVKSGATAIVAE----HPLNITEVPVI 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V     AL ++A A   +   K  +I ITG+ GKT+T  M+   +   +K    IG+  
Sbjct: 82  IVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMY 141

Query: 144 ----------NNHIGVPLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVRPHI 186
                      N     +TL +     +  DVD  I E+     HLG +    H     I
Sbjct: 142 MKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRV----HGCDYDI 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237
           AV T +   HL   + +EE   AK+ +F  L       K     LN DD   S+FE + A
Sbjct: 198 AVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEASSYFEKVTA 257

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    + ++   + AD   +  +   + +  ++     + +V    +G     N+L
Sbjct: 258 AE-------VMTYALERKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNIL 310

Query: 298 --MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +++GIVS LT   +T + A+      +GR +   C  +Q F  ++D  Y   P S++ 
Sbjct: 311 AAVSVGIVSGLT--FETIVSAIEELEGVKGRFELVNC--DQDFPVIVD--YAHTPDSLEN 364

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            ++   +++   EG+   V+G  C  G+  ++    +A++   Y    V+ S
Sbjct: 365 VLTTCKELT---EGKIFCVIG--CG-GDRDKTKRPQMAQIAVKYADEPVFTS 410


>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
 gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
          Length = 488

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 161/394 (40%), Gaps = 51/394 (12%)

Query: 9   DLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           ++LQAI   + G+V       ++GI +DSR I   + F A+KG   DGH +I  A++KGA
Sbjct: 5   NILQAI---TTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
             VV  T  +    S ++    V+D   A+ +LA        SK  +I +TG+ GKTT  
Sbjct: 62  TAVVCET--LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTIA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVD-VDFGIFE- 166
            +L             I +  N+I             P+T    L RM  +   +   E 
Sbjct: 120 TLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFMEV 179

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               +    +G ++F          + T +   HL      E    AK   F+GL KT  
Sbjct: 180 SSHAVAQKRIGGLKFAG-------GIFTNLTRDHLDYHKTFENYLKAKKAFFDGLLKTAF 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD    ++   + A     + ++     ADF+ +  +   E   +++     + E
Sbjct: 233 ALTNADDRNGLVMTQNTKA----KVATYSLRSLADFKGKVLEDGFEGMLLDIN----NRE 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG   A N+L       +L    +  +  LS   P  GR    R    +G+  ++
Sbjct: 285 VNVQFIGRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLRST--KGYTAIV 342

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P ++   ++ + ++  +G G+ I V+G
Sbjct: 343 D--YAHTPDALTNVLNTIHEV-LNGRGKVITVVG 373


>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 484

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 34/369 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR +   + F  IKG   DGH +I  A++ GA ++++  ++   + + +I V 
Sbjct: 23  ISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENGASVIIMQDEI--EVVNKNISVI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  + +        K  II ITG+ GKTTT  M+   L S  K    IG+  
Sbjct: 81  KVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGKKVGLIGTIA 140

Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P +L    +        V++ + E+  SH  E+  + + V   + +
Sbjct: 141 NYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVS-SHSLELDRV-YGVDFEVGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   ++K ++F   +++    +N DD++ + +    + L  K IY
Sbjct: 199 FTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIINNDDNYGKQVIKDLNKLKAKNIY 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            +   ++++F+    K  S+    +V L+ K  E +    G +   N L  +G    L  
Sbjct: 256 EYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILSIPGEYNIYNALGAIGACYKLNI 314

Query: 309 DVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++     ++ V  P  GR +R     N  +  +ID  Y   P  +K   ++L       
Sbjct: 315 PMEAIKNGINKVIVP--GRCERTATNYNLPYDIIID--YAHTPDGLK---NILETARGFT 367

Query: 368 EGRRIAVLG 376
           +GR IA+ G
Sbjct: 368 QGRLIAIFG 376


>gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
 gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
          Length = 501

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 156/381 (40%), Gaps = 52/381 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR I P + F A +G + DG ++I  A+ +GA  V  + D          +P  G+ D+
Sbjct: 29  DSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGAFQWQPEWRVPNQGISDL 88

Query: 92  LGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--IGSYNN-- 145
                 +A  A   L     II +TG+ GKT+  + L  A+ ++++  +C  IG+  N  
Sbjct: 89  SQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQAIDNLEQAPSCAIIGTVGNGF 148

Query: 146 --HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIA 193
              +         PV V   I +          + +S  G  ++  + V  H AV T + 
Sbjct: 149 FGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYRVNGVPFHTAVFTNLT 208

Query: 194 PAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA--KSHALGIKT--- 246
             HL     + E  +AK  +F  +GL+      +N DD+F   L A  K H+  +KT   
Sbjct: 209 RDHLDYHGSMAEYGAAKERLFYWQGLQNA---IINSDDAFGAALAAELKQHSGSLKTEGC 265

Query: 247 ----IYSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                Y++G ++ AD  +  +    E         W E   Q + +       G   AQN
Sbjct: 266 NEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEGSAQTRLL-------GRFNAQN 318

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               LG +     D   A+ ALS   P  G   R  C + Q    L+   Y   P +++ 
Sbjct: 319 FAAALGALCAAGYDFQAALTALSRIRPATG---RMDCII-QPDKPLVVVDYAHTPDALEK 374

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A++ L +I    E R   V G
Sbjct: 375 ALTTLREIQ-QPESRLWCVFG 394


>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
 gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
          Length = 498

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 167/406 (41%), Gaps = 57/406 (14%)

Query: 4   LWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L + I+G ++I       + GIS DSR I     F  I G H DG  F   AV+
Sbjct: 1   MKTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVE 60

Query: 63  KGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVG 118
           KGA  V+ N   D+   I  +++P     D+  AL  +          K  +I +TG+ G
Sbjct: 61  KGAVAVLTNKHLDLPLEITQITVP-----DIHAALEDIVPYFYDYPGKKMRMIGVTGTNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN---------HIGVP------LTLARMPVD-VDF 162
           KTTT  ++   L         IG+ +          H   P        LA M  + +D+
Sbjct: 116 KTTTSHIIAHILREAGYHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEGMDY 175

Query: 163 GIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + E     L ++ +  I + T       AV T +   HL      E   +AKA++F GL
Sbjct: 176 VVMEVSSHALALNRVAGIEYDT-------AVFTNLTQDHLDFHKSFENYVAAKAKLFSGL 228

Query: 218 ------EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                 +K  T  +N DD    E+LKA S       + ++G  K+AD +    +   + S
Sbjct: 229 TAEPPVKKNKTAVINIDDPHADEILKATSC-----KVLTYGVEKDADLKGSNLQVGLKSS 283

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +V     S+ +  H  G     N L  +G       D D   KA+  F+   GR +  
Sbjct: 284 SFDVVGPFVSVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELV 343

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                Q F  ++D  Y+  P S++ A++    + P+   R I V G
Sbjct: 344 EAG--QDFAIVVD--YSHTPDSLEKALTTARAMKPN---RIITVFG 382


>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
 gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium cellulovorans 743B]
 gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
          Length = 481

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 156/371 (42%), Gaps = 42/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NGI  DSR +   + F  I G   DGH+F   AV  GA +++   D+ A      + + 
Sbjct: 23  INGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSGANVIICEKDITA---YKDVTII 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   AL K++         +  II +TG+ GKTT+  ML   L         IG+  
Sbjct: 80  KVKNTRKALAKVSAVYYNNPERRLKIIGVTGTNGKTTSVFMLKAILEKAGFKVGLIGTIA 139

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P  L L ++  D     VD+ + E+    L   R   + +  +  +
Sbjct: 140 NYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVMEVSSHSLDLDR--VYGIEFNSGI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E   ++KA++F  + K+  I  N DD +   L  K+     K  Y
Sbjct: 198 FTNLTQDHLDYHKTLENYFNSKAKLFT-VSKSSII--NLDDDYGVALADKTQE---KLTY 251

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILT 307
           +    KNAD +       S  S  E++  G+  E+ +  I G +  QN L  +G  SIL 
Sbjct: 252 AI--DKNADLKAENINLTSRGSTFELEYNGEK-EIFNINIPGKYNIQNALGCIG--SILK 306

Query: 308 ADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             V   +  + L       GR +      N GF  ++D  Y   P S+   + +L     
Sbjct: 307 EGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGFEIIVD--YAHTPDSL---LKILKTARE 361

Query: 366 HGEGRRIAVLG 376
             +GR I+V G
Sbjct: 362 FTDGRLISVFG 372


>gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 144

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30  DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+T
Sbjct: 85  QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144


>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
 gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 134/324 (41%), Gaps = 34/324 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I   SR++   + F AIKG  +DGH+FI  A+  GA  VV      A    L +P  
Sbjct: 22  VNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEAISNGAVAVVGE----AEYDCLPVPYI 77

Query: 87  GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  LA            +I ITG+ GKTTT  M+     +  ++ +   + +
Sbjct: 78  KVQDARQALGNLAKTLYCDPSKMHNMIGITGTNGKTTTAYMVKHIFQTASESCSLFSTVS 137

Query: 145 NHI-GVPL-------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N + G  L              + RM +D +  + E+    L + R     +  +  + T
Sbjct: 138 NFVNGTELMSTATTPDILELNKMLRMSMDKNV-VMEVSSHGLHQKR--VEGIEFNYGIFT 194

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN----YDDSFFELLKAKSHALGIKT 246
            +   HL     +EE  + KA +F+ L+K G   +N    +       LK K      ++
Sbjct: 195 NLTHDHLDYHQNMEEYFNTKAGLFKLLKKNGEAIINSGCPWGRKLINQLKNKR-----QS 249

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + SFG S+N D QL   K     S + +Q     +E+     G H  QN L  +      
Sbjct: 250 VLSFGTSENDDLQLLSTKDGV--SKIRIQGSNVKLEIKMPMPGNHNLQNALAAILCAYRA 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRY 330
             +V+   +A+  F    GR + Y
Sbjct: 308 GVNVNDIKRAVESFPGVPGRFEEY 331


>gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
 gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
          Length = 483

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 171/391 (43%), Gaps = 32/391 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P   FF I+G   DGH +I  A+ +GA ++V + +++       I    V++ L
Sbjct: 22  DSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHSKELLEKKNG--IIYILVENTL 79

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNN- 145
             LN+++        +K  II +TGS GKT    M+  A+S    T   IG+    YN  
Sbjct: 80  EELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYCNT-GYIGTISLEYNGF 138

Query: 146 HIGVPLT------LARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               P T      L R    ++ G   +  +  S  G        V   +AV+T I   H
Sbjct: 139 KEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDSVNFSVAVMTNIGAEH 198

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L      E+   AK ++FE ++ +G + LN DD  F  L+ K+   G   I ++G +  +
Sbjct: 199 LDFHGTREQYILAKQKLFEMIKPSGWVVLNSDDENF--LRIKNSTKG--KILTYGINNQS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D   + ++   + S  ++  +G +  V    +      N+L  +  +  +  D    ++A
Sbjct: 255 DVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVCTLIAMGCDEKMVLQA 314

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +    P EGR +  +    Q F  +ID  Y  +  + +     +  +    +GR IAVLG
Sbjct: 315 VKEVKPVEGRMELIKAK--QNFSVIID--YCQHINNYEQIFEFVDSVR-QNKGRLIAVLG 369

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                G+ +     ++ +V + Y + HV L+
Sbjct: 370 ---APGKRNYKMRREIGKVANKY-LDHVILT 396


>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
 gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
          Length = 487

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 27/270 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++ +  DSR I   + F AIKG + DGHD+I  AV+KGA  V+V   +   +  ++ I V
Sbjct: 23  ISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKGATAVIVEKKLKKYLSGITYIEV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                 +  L K   A  L +   +I ITG+ GKTTT  ++   L       A  G+  N
Sbjct: 83  ENTRKEMAVLAKNFFANPL-ADIDLIGITGTNGKTTTAYLIYNILRKNSFKTAMFGTIKN 141

Query: 146 HI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVIT 190
            I G  ++  R  P  +D   +    +    ++++   V  H             +AV T
Sbjct: 142 IIAGEEISATRTTPESLDLYRY-FSQAKTAGVQYIVMEVSSHALDLYRVHQMDFSLAVFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHALGIKTIY 248
            ++P HL     +     AK+++F  L    +  +N DD  S F L K+K+H       Y
Sbjct: 201 NLSPEHLDYHKDLASYRQAKSKLFSQLSPDASAVINLDDKNSGFMLEKSKAHNFK----Y 256

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           S   ++NAD   + +K   +Q+ +  Q QG
Sbjct: 257 SLS-NQNADLYCQNYKL--KQNSLNYQSQG 283


>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
 gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
          Length = 482

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 162/388 (41%), Gaps = 39/388 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +LL+AIQ   I    +  + G++IDSR +A    F A++G   DGH +I  A++KGA + 
Sbjct: 5   ELLKAIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKGA-IA 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
           V+  DM        +    V D   A+ K+A        SK  ++ +TG+ GKTT   +L
Sbjct: 64  VLCEDMPEETNP-DVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170
                        I +  N+I             P+TL R+  ++      +   E+   
Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R     ++    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 183 SIAQQRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+     +  E  +  + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----RVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D ++  + 
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSIRSP--KGITAIVDYAHTPD- 349

Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376
               A ++VL+ I     G+G+ I V+G
Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373


>gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
 gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
          Length = 522

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 150/366 (40%), Gaps = 49/366 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR++ P   F AI+G   DGH FI  AV  GA LVV       +       VF
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEALPTRARERFPGVVF 121

Query: 87  G-VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D   AL + A A       +  ++ +TG+ GKTT   ++   L ++ +T   + + 
Sbjct: 122 ARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETAGLLSTI 181

Query: 144 NNHIG-----------VPL----TLARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRP 184
               G            PL    TL RM   VD G     M   SH L + R   H +  
Sbjct: 182 KVQAGGETTALALTTPGPLVLHRTLRRM---VDRGCTACAMEVSSHALDQDRV--HGLDY 236

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+ TT++  HL     +++  +AK  +F+ L    T   N DD     + A + A   
Sbjct: 237 EVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNADDEAGPTMVADTEA--- 293

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMT 299
             + SFG  ++AD          E + +E +L G+ + +  H       G   A NM   
Sbjct: 294 -RVVSFGLDRDADI---------EATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAA 343

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G  + L    +    AL+   P  GR +  R     G   ++D  Y   P +++  +  
Sbjct: 344 YGTGTALGHAPEAVADALADAPPVPGRVEPLR--FGDGTTVIVD--YAHTPDALENVLRT 399

Query: 360 LSQISP 365
           +   +P
Sbjct: 400 VRDTTP 405


>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 501

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 143/349 (40%), Gaps = 44/349 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +  H++   PQ  ++ +  DSR I P   + A+KG   DGH+FI  A+++GA  VV
Sbjct: 6   LLKDLPSHTLTGSPQVKISHLECDSRRILPGSCYIALKGTRADGHEFIPEAIRRGACAVV 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
                        +    V+D   A++ +  A   R     T+I +TG+ GKTTT     
Sbjct: 66  AEMPCTQEAREAGVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMIGVTGTNGKTTTA---Y 122

Query: 128 IALSSIKKTYACIG-----SYNNHIGV---------PLTLARM----------PVDVDFG 163
           IA S +K+++   G     +Y+N   +         PL L  +           V ++  
Sbjct: 123 IAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEMYENGCRGVSMEVS 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
              L    +  I F       ++ + T +   HL     +E    AKA++FE +      
Sbjct: 183 SHALDQERVAGINF-------NVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQMAQDTKS 235

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     +N DD++   L       G  T+ ++G +  ADF++      ++ S  E++ +
Sbjct: 236 RRKPVAVINIDDAYGRRLAEMFS--GRMTVKTYGSALGADFRMLVHHATAKGSEYELEYK 293

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           GKS  V    IG     N L  L  V      V  AI  L       GR
Sbjct: 294 GKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGR 342


>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
 gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
          Length = 482

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 158/388 (40%), Gaps = 39/388 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLLQ IQ   I       + G++IDSR I     F A++G   DGH +I  A+ KGA  V
Sbjct: 5   DLLQTIQPVRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGA--V 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            V  + +       I    V D   A+ K+A        SK  +I +TG+ GKTT   +L
Sbjct: 63  AVLCEELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170
                        + +  N+I             P+TL R+  ++      +   E+   
Sbjct: 123 YNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R     ++    + T +   HL     +E    AK + F+ L K      N DD 
Sbjct: 183 SIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+     +  E  +  + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R    +G+  ++D ++  + 
Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVDYAHTPD- 349

Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376
               A ++VL+ I     G+G+ I V+G
Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373


>gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 810

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 35/369 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           DSR I P + F A +G + DG  +I  A++ GA  V    D            + P+  +
Sbjct: 29  DSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWAVSNQPISDL 88

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNH 146
               G L   AV         I  +TG+ GKT+  + +  A+  +  KK+ A IG+  N 
Sbjct: 89  KQCAGILAN-AVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKKSCAIIGTVGNG 147

Query: 147 IGVPL--TLARMPVDVDFGIF-----ELGMSHL-------GEIRFLTHLVRPHIAVITTI 192
               L  T    P  V          +LG +H+       G  ++  + V    A+ T +
Sbjct: 148 FFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNGVPFKTAIFTNL 207

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIY 248
              HL   + + E  + KA +F  +GLE      +N DD F    +L+ K        IY
Sbjct: 208 TRDHLDYHNSMAEYGATKARLFHWQGLENA---IINSDDEFGSKLILQLKQQYADNLNIY 264

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S+G ++NAD ++ ++   ++   + +Q    +       +G   AQN    +G +     
Sbjct: 265 SYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAIGALCASGF 324

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHG 367
           +   A+ ALS   P  G   R  C +N+    L+   Y   P +++ A++ L +I SP  
Sbjct: 325 EFQAALNALSQIRPATG---RMDCIINEN-KPLVVVDYAHTPDALEKALTTLREIQSP-- 378

Query: 368 EGRRIAVLG 376
           E +   V G
Sbjct: 379 ESKLWCVFG 387


>gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
 gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
          Length = 491

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 160/384 (41%), Gaps = 56/384 (14%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  + +DSR + P   FF IKG  +DGH ++  A++ GA  VV + D+  +  + +
Sbjct: 11  PDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDIKRN--NAN 68

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC- 139
           +    V DV  ALN++A         K  +  +TG+ GK++   M+   L+ +   YAC 
Sbjct: 69  VVYIKVRDVTAALNQVAACFYGYPSKKMVVYGVTGTNGKSSIACMIRNLLNPV---YACG 125

Query: 140 -IGSYNNHIG-------------VPLT--LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            IG+ +   G             VPL   L  M          L +S +G  +  T  V 
Sbjct: 126 YIGTISIEYGDTKLPPLLTTPDIVPLQQILHDM-AQAGMKACALEISSIGLEQHRTDSVD 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IA+ T +   HL     +E    AK  +F+ L+  GT   N DD     + A   A  
Sbjct: 185 VDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKPDGTAITNKDDPHGMAIVADCPA-- 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLG 301
              + ++G  + AD++ +           ++QL        +VH G  Y +  N++    
Sbjct: 243 --RVVTYGVLEKADYEAK-----------DIQLNADKTIFTLVHDGSEYPVQTNLVAMFN 289

Query: 302 IVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           + ++L            ++  ++ L+     EGR +R      Q F  ++D  +   P  
Sbjct: 290 LYNLLAVIAALHEGGLPIEQILEQLNTIPQIEGRMERIE--EGQPFNIIVD--FAHTPDG 345

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++      S I+P  E R I+V G
Sbjct: 346 LEQIFKFASAITPK-EKRIISVFG 368


>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
 gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
          Length = 500

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 33/253 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV--VNTDMVA---SIGSLSIP 84
           I+ DSR I P + F A+KG   DGHDFI  AV+KGA  V+  + TD +A   +  S  +P
Sbjct: 26  INYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAVAVLSELKTDAIARKLACESDQMP 85

Query: 85  V-FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V   V+D   AL++LA            +I ITG+ GKTTT  +L   L++  +    IG
Sbjct: 86  VLLQVEDSRKALSQLAATFYGHPFRTMNLIGITGTNGKTTTSYLLEFILAAAGRNPGVIG 145

Query: 142 SYNNHIG---------VPLTLARMPVDVDFG-------IFELGMSHLGEIRFLTHLVRPH 185
           + N  IG          P +L  M +  +         I E+    L + R      R  
Sbjct: 146 TINRRIGQLCFKSSVTTPESLDLMKILREMADQSATDVIMEVSSHALDQGRVADCPFR-- 203

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-----IFLNYDDSFFELLKAKSH 240
           +A+ T I+  HL     +++   AK+ +FEGL   G        +N DD + + L A + 
Sbjct: 204 VALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGNQGAACAVINTDDPWGKHLMALTP 263

Query: 241 ALGIKTIYSFGKS 253
           A  +   Y  G S
Sbjct: 264 ARTV--TYGLGNS 274


>gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
 gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
          Length = 522

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 150/366 (40%), Gaps = 49/366 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR++ P   F AI+G   DGH FI  AV  GA LVV       +       VF
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEALPTRARERFPGVVF 121

Query: 87  G-VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D   AL + A A       +  ++ +TG+ GKTT   ++   L ++ +T   + + 
Sbjct: 122 ARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETAGLLSTI 181

Query: 144 NNHIG-----------VPL----TLARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRP 184
               G            PL    TL RM   VD G     M   SH L + R   H +  
Sbjct: 182 EVRAGGETTAPALTTPGPLVLHRTLRRM---VDRGCTACAMEVSSHALDQDRV--HGLDY 236

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+ TT++  HL     +++  +AK  +F+ L    T   N DD     + A + A   
Sbjct: 237 EVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNTDDEAGPTMVADTEA--- 293

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMT 299
             + SFG  ++AD          E + +E +L G+ + +  H       G   A NM   
Sbjct: 294 -RVVSFGLDRDADI---------EATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAA 343

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G  + L    +    AL+   P  GR +  R     G   +ID  Y   P +++  +  
Sbjct: 344 YGTGTALGHVPEAVADALADAPPVPGRVEPLR--FEDGTTVIID--YAHTPDALENVLRT 399

Query: 360 LSQISP 365
           +   +P
Sbjct: 400 VRDTTP 405


>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
 gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
          Length = 482

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 160/395 (40%), Gaps = 49/395 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163
           TT   +L       +     I +  N+I             P+TL R+          + 
Sbjct: 116 TTIATLLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYV 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    + + R     ++    + T +   HL     +E    AK + F+ L K+   
Sbjct: 176 FMEVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD    ++   + +     +Y++      DF+ R      E  +  + L   + E+
Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D
Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
            ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 485

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 39/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     F A++G   DGH +I  A++KGA + ++  ++ A +    I   
Sbjct: 23  ITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKGA-IAILCEELPAELNE-EITYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ K+A A      SK  ++ +TG+ GKTT   +L             I +  
Sbjct: 81  QVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140

Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I             P+TL R+          +   E+    + + R     ++    +
Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQKRISG--LKFAGGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AK + F+ L K+     N DD    ++   + +     +Y
Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDELPKSSFSLTNLDDKNGLVMTQNTKS----KVY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     +DF+     +  E  +  + L   + E+    IG   A N+L   G   +L  
Sbjct: 255 TYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVQFIGRFNASNLLAVFGAAVLLGK 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366
             +  + ALS  HP  GR    R    QG+  ++D ++  +     A ++VL+ I     
Sbjct: 311 KEEEVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363

Query: 367 GEGRRIAVLG 376
           G+G+ I V+G
Sbjct: 364 GKGKVITVVG 373


>gi|326330650|ref|ZP_08196954.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325951491|gb|EGD43527.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 496

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 151/355 (42%), Gaps = 40/355 (11%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-------NKLAVAARLRSKA 108
           F+LHAV      V V   ++A + +  +P+  V     AL         +A   ++++ A
Sbjct: 103 FVLHAV------VTVLIALLAPVAAGLLPILAVPLAEAALAIMWPIEKAMAKKWQVQAAA 156

Query: 109 TI-------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDV 160
           TI       +AITGS GKT+TK   T  +     T A   S+NN +G+   +  R+    
Sbjct: 157 TIKKVNPKIVAITGSYGKTSTKNYATHLMQGRWSTLASPASFNNAMGLSRAVNDRLQPGT 216

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+G    GEI  LT +  P +A ITTI  AHL      E I  AK+EI   L K 
Sbjct: 217 DIFVAEMGTYGPGEIAELTEIFPPEVAAITTIGEAHLERMKSRETIVKAKSEI---LPKA 273

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN D     L+     A       S      A+  +   K         V+L  + 
Sbjct: 274 STVVLNIDVPELALIAENLRASKRVIACSAVPGTAAEVLVTDGKLTINNETYAVELPDE- 332

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              V H I      N+ + +G+   +   ++T  + L+      G   R       G   
Sbjct: 333 ---VGHPI------NVAIAVGLALAVEVPIETITQRLASI---PGTPHRAEANRTPGGVW 380

Query: 341 LIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAE 394
           +ID+++N+NP    AA++   +++  GE G    +   M E+G    + +I+ A+
Sbjct: 381 VIDDTFNSNPTGAAAALAKAKRLA--GESGTVWTITPGMVELGTEQAARNIEFAQ 433


>gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii str. Madrid E]
 gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii]
 gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE
           (murE) [Rickettsia prowazekii]
 gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii Rp22]
          Length = 480

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 157/369 (42%), Gaps = 51/369 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S +S+++   E FFAIKG + DG+DFI  A+  GA LV+       +I      V 
Sbjct: 14  IKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAIDK----VI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +I++TG+ GK++    +  A S +KK  A IG+    
Sbjct: 70  YVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTIGLE 129

Query: 147 I-GVPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IAV 188
           I G    +  +P     D+  F     +L E  I +L      H             I  
Sbjct: 130 IFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIVS 189

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T+ +  HL      E    AK ++F + L  +G   LN D    E +K   H   +K I
Sbjct: 190 FTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNVKFI 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---------AQNMLM 298
            + GK    D Q+ K   CS        L G++++ + + I Y++         A N+L+
Sbjct: 250 -TVGKK--GDLQITKI-TCS--------LTGQNIDFIFNNIIYNLHTLIIGSFQASNLLI 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +       D  I+AL+   P +GR +R       G    +D  Y+  P S++ A+ 
Sbjct: 298 AALTLYYTGFKFDEIIEALAKVKPIKGRMERI-----DGTNIFVD--YSHTPDSLEKALI 350

Query: 359 VLSQISPHG 367
            L  I  HG
Sbjct: 351 ELKNIKLHG 359


>gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
 gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
          Length = 522

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 159/384 (41%), Gaps = 42/384 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G +P   V GI+ + R   P   F A  G   DGH FI HA+++G    +V    +  I 
Sbjct: 24  GTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAIERG----IVAVVGMQEIS 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEML-TIALSS---- 132
            LSIP   V +   AL  L+ A       + T+I +TG+ GKTTT  ++  I L++    
Sbjct: 80  GLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTGTDGKTTTSNLIYQILLAAGHSA 139

Query: 133 --IKKTYACIGSYNNHIGVPLTLARMPVDVDF--GIFELGMSHLGEIRFLTHLVRPH--- 185
             +    A IG      G  +T    P    +   +   G++H+  +   +H +  H   
Sbjct: 140 GIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRAAGLTHV-VLEATSHGLEQHRVT 198

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--------IFLNYDDSFF 232
                + V+T I   HL      E   +AK  +F  L +T            LN DD  +
Sbjct: 199 GCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSETPEKPHGNPRLAVLNRDDQSY 258

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E L++      +    S+G ++ AD +    +  +++   ++  +     V    +G + 
Sbjct: 259 EYLQSLVRVPAV----SYGLAEGADLRAENIRYEADRLRFDIVGRDFRQPVETCLVGEYN 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L      ++L   +D+   A  + +     G+  R  + Q F  ++D  +   P +
Sbjct: 315 VSNCLAAFA-ATVLGLGIDSQHAAQGIANMSGVPGRMERIHMGQSFHAIVD--FAHTPNA 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +K A+    QI+    GR IAV G
Sbjct: 372 LKQALLTARQIT---RGRVIAVFG 392


>gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 483

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 156/392 (39%), Gaps = 43/392 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL+ I    I       + GI  DSR      AF A+KG   DGH +I +A+  GA 
Sbjct: 3   LKDLLKGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQYINNALDLGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
           +V+    +  S     I    V D   A  K+A        +K  ++ +TG+ GKTTT  
Sbjct: 63  VVIHQEKVDTS--REGITYIKVKDSADAAGKIATLWYGDPSAKLKLVGVTGTNGKTTTAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFGIFELG 168
           +L             + +  N+I             PL+L  M         ++   E+ 
Sbjct: 121 LLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAKMVDAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH    + ++ L +    + T I   HL     + E   AK   F+ L +T     N D
Sbjct: 181 -SHAIHQKRISGL-KFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDNLPETAFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           D       +  KAK +   +KT+        ADF+ +  ++  + +   V+   K ++V 
Sbjct: 239 DKNGAVMLQNTKAKKYTYSVKTL--------ADFKAKIIEKHFDGTA--VEFNNKELQV- 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L   G   +L  D D A+  LS   P  GR +  R   N  +  ++D 
Sbjct: 288 -QFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPEN--YTAIVD- 343

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P ++   +  + ++   G GR I V+G
Sbjct: 344 -YAHTPDALTNVLEAIHEV-LEGNGRVITVVG 373


>gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 497

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 175/433 (40%), Gaps = 54/433 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ DSR + P   FF I+G   DGH F   A + GA + V +  +   +G    PV 
Sbjct: 24  VDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGANVFVASKPIKEQVGDS--PVI 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V DV   +   A            +I +TG+ GKTT   M+   L  + K  A IG+  
Sbjct: 82  YVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVTHMVDYLLEELGKPTALIGTMY 141

Query: 145 NHIG---------------VPLTLARMP-VDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG               V  TL ++  +  D  I E+  SH   LG +  + +    +
Sbjct: 142 RKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEVS-SHALQLGRVWGIDY----N 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           +AV T +   HL     +E  A AK+ +F  L      EK     LN D  +F      +
Sbjct: 197 VAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVAILNRDQEYFGQFAYST 256

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I S+G S+ AD +  + +     +   V + G+ + V+   IG     N+L  
Sbjct: 257 SA----EIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPMIGLFNVYNVLAA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+  +    +  AI+ ++ F P  G G+       Q F  +ID  +   P  ++  +S 
Sbjct: 313 FGVAMVNGIPLRKAIEKIAKF-PGVG-GRMQLIQKGQPFQVIID--FAHTPDGLENVLST 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L ++  +   R I ++G     G    S   +L E+           S + +L   +   
Sbjct: 369 LEEVKIN---RVITIMGHSG--GNRDSSMRPELGEIA-------FEKSDYVILTADNPRQ 416

Query: 420 RSIHVHYSETMDG 432
            S+   YSE + G
Sbjct: 417 ESLEKIYSEIVSG 429


>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 482

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 158/388 (40%), Gaps = 39/388 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLLQ IQ   I       + G++IDSR I     F A++G   DGH +I  A+ KGA  V
Sbjct: 5   DLLQTIQPVRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGA--V 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            V  + +       I    V D   A+ K+A        SK  +I +TG+ GKTT   +L
Sbjct: 63  AVLCEELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170
                        + +  N+I             P+TL R+  ++      +   E+   
Sbjct: 123 YNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R     ++    + T +   HL     +E    AK + F+ L K      N DD 
Sbjct: 183 SIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+     +  E  +  + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R    +G+  ++D ++  + 
Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVDYAHTPD- 349

Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376
               A ++VL+ I     G+G+ I V+G
Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373


>gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
 gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
          Length = 495

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 156/391 (39%), Gaps = 43/391 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ I+G+  G+     ++ ++ DSR + P   FF I G   DGH F   A +KGA   V 
Sbjct: 12  LKKIEGNLSGVT----IDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKGAVAFVA 67

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +  +   +G    PV  V DV   +  LA            +I +TG+ GKTT   M+  
Sbjct: 68  SKSIKNQVG--DTPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTVTHMIDA 125

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL--VRPH- 185
            L    K  A IG+    IG P  +       +          L EI   T L  V  H 
Sbjct: 126 LLEKPNKPTALIGTIYRKIG-PKIIQTHNTTPEILTLHETFQELKEIGGETCLMEVSSHA 184

Query: 186 ------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLN 226
                         V T +   HL     +E+ A AK+ +F  L        K     LN
Sbjct: 185 LQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKPKVAVLN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD  F++ +  +       + S+G ++ ADF+    +  +  +  E+ +Q     +V  
Sbjct: 245 ADDEQFQMFEYSTPV----QVISYGINEEADFKAENIRTENGHTIFELVIQNDERYLVDM 300

Query: 287 G-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     NML  + +  +    ++  +K +  F    GR +       Q F  ++D  
Sbjct: 301 PLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQ--SVDKGQDFQVIVD-- 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +   P  ++  +  L+QI PH  G+ I V+G
Sbjct: 357 FAHTPDGLENVLDSLAQI-PH--GKIITVVG 384


>gi|227514324|ref|ZP_03944373.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087296|gb|EEI22608.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 263

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 16/268 (5%)

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   ++IA AK EI  GL + GT   + D+    LL+ ++  L  +T  +FG+  + D  
Sbjct: 1   FGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAKLSQQT-KTFGRQLDDDLY 56

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   +     V      +  +   +G +   N L  + +  ++        +AL  
Sbjct: 57  ATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMTVGKLMHVTPANMKQALQN 115

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               E R +    A  +    ++ + YN+NP ++K  ++ L+ I     G+R+AVLGDM 
Sbjct: 116 VELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLATIPV--AGKRVAVLGDML 170

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGL 433
           E+GE S   H  L + +   ++  V+L G  + ALKDAL ++      +H + +     L
Sbjct: 171 ELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRKAL 230

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +Q+SL  GDVV++K+S+     +++
Sbjct: 231 TDALQASLTTGDVVLLKASHGLHLEKVL 258


>gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
 gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
          Length = 471

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 150/370 (40%), Gaps = 34/370 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           L++    A L +    +A+ G+ GKTTT  MLT+ L  + +   Y CIG         L 
Sbjct: 103 LHRSEALAALMAGRRAVAVAGTHGKTTTTSMLTVVLQHAGLDPAY-CIGGQ-------LV 154

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  D   G   +  +   +  FL +   PHIAV+T +   HL N+   E++    A 
Sbjct: 155 TTGLGADDGTGDVFVAEADESDGSFLRY--SPHIAVVTNVEADHLDNYGAFEKVKENFAR 212

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             E +E  G +  + DD     L   +   G+ T+ ++G+S  AD +L  +      S  
Sbjct: 213 FVERIEPGGALVASADDPVAGELAGAARERGL-TVVTYGESAGADLRLTGFTPRGLGSRF 271

Query: 273 EVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            ++  G+ ++EV     G H A N    L +  +L  D  T    L+ F    G  +R  
Sbjct: 272 AIEGLGELTLEVP----GRHYAHNATAALAVARLLGCDFATIRDGLASF---TGSMRRLE 324

Query: 332 CALNQGFFTLIDESYNANP----ASMKAAISVLSQISPHGE-GRRIAVLGDMCE------ 380
                G   + D SY  +P    A ++A    L Q++  G  GR +AV            
Sbjct: 325 RKGEAGGVQVFD-SYAHHPTELTADLQATREYLDQLAAEGRTGRIVAVFQPHLYSRTRFF 383

Query: 381 MGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
             E  ++  + D+A VL +Y        G     + DA+P    V Y    + +   +  
Sbjct: 384 ATEFGRALGLADVAVVLDVYGAREDPEPGVSGRLIADAVPEGTRVEYVPVREQVPQVVAE 443

Query: 440 SLVDGDVVVV 449
               GD+V+ 
Sbjct: 444 LARPGDLVLT 453


>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 492

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 31/372 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ +S+ +     FFA+ G   DGH FI  A++KGA  VV  T          +   
Sbjct: 21  IDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGHFMPSEYADVTWI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           GV+D   AL+ ++         +  II ITG+ GKTTT  ++   L    K    IG+  
Sbjct: 81  GVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKKTGVIGTIK 140

Query: 145 ------NHIGVPLT---------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                   + V  T         L  M V  V++ I E+    L   R      +  IAV
Sbjct: 141 YLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKR--VDYTKFDIAV 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T ++  HL     +E+  +AK  +F E L+  G   +N+DD +   L   +  L  K I
Sbjct: 199 FTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRL---AEQLNTKKI 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               ++  AD  ++ ++   +++ + + ++  K + V  H +G     N++  + +   L
Sbjct: 256 TYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTHLLGIPNIYNVISAVSVAVAL 315

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D    A+S  H  +GR +  R    Q F   +D  Y  +P +++  +  + ++   
Sbjct: 316 NIPFDIIESAISDAHSPDGRFE--RVDEGQDFLVFVD--YAHSPDALERLLISVRKLKEE 371

Query: 367 --GEGRRIAVLG 376
               G+ + V G
Sbjct: 372 ISKNGKIVTVFG 383


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 159/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D     VDF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|163784032|ref|ZP_02178990.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880704|gb|EDP74250.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 167

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 8/121 (6%)

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           ++ +N+ +++ I+  L  D + A+  L  F P +GRGK     +     T+ID++YNANP
Sbjct: 2   NILENIAISILIMDYLGLDFEKALDTLKEFSPLDGRGK----IIKHKNLTIIDDTYNANP 57

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S K AI  LS +    +G++I VLGDM E+G+ S+  H ++   +   NI  V+L G  
Sbjct: 58  TSTKTAIETLSDL----KGKKILVLGDMKELGKFSKEKHEEIGRYILNSNIDKVYLYGEE 113

Query: 411 V 411
           V
Sbjct: 114 V 114


>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
 gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
          Length = 482

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 162/388 (41%), Gaps = 39/388 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +LL+AIQ   +    +  + G++IDSR +A    F A++G   DGH +I  A+++GA + 
Sbjct: 5   ELLKAIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQGA-IA 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
           V+  DM        I    V D   A+ K+A        SK  ++ +TG+ GKTT   +L
Sbjct: 64  VLCEDMPEEPNP-DITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170
                        I +  N+I             P+TL R+  ++      +   E+   
Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R     ++    + T +   HL     +E    AK + F+ + K+     N DD 
Sbjct: 183 SIAQQRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+     +  E  +  + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----RVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D ++  + 
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSIRSP--KGITAIVDYAHTPD- 349

Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376
               A ++VL+ I     G G+ I V+G
Sbjct: 350 ----ALVNVLNAIHDVLAGRGKVITVVG 373


>gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia typhi str. Wilmington]
 gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington]
          Length = 498

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 160/378 (42%), Gaps = 52/378 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+S +S+++   E FFA+KG + DG+DFI  A+  GA LV+        I      V 
Sbjct: 20  INGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK----VI 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +I++TG+ GK++    +      ++K  A IG+    
Sbjct: 76  YVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGLE 135

Query: 147 I-GVPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IAV 188
           I G    +  +P    +D+  F     +L E  I +L      H             I  
Sbjct: 136 IFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIVS 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T+ +  HL      E    AK ++F + L  +G   LN D    E +K       +K I
Sbjct: 196 FTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKFI 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---------AQNMLM 298
            + GK    D Q+ K   CS        L G++++ + + I Y++         A N+L+
Sbjct: 256 -TVGKK--GDVQITKI-TCS--------LTGQNIDFIFNNIIYNLHTLIIGSFQASNLLI 303

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +       D  I+ALS   P +GR +R       G    +D  Y+  P +++ A+ 
Sbjct: 304 AALTLYYTGFKFDEIIEALSKVKPVKGRMERI-----DGTNIFVD--YSHTPDALEKALI 356

Query: 359 VLSQISPHGEGRRIAVLG 376
            L  I PHG G+   + G
Sbjct: 357 ELQNIKPHG-GKLSVIFG 373


>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
 gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
          Length = 488

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 167/391 (42%), Gaps = 60/391 (15%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           IG++P   V+ I IDSRS+ P   F  IKG   DGHD+   AV  GA +VV   ++    
Sbjct: 16  IGVLPDQ-VSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 74

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               + V   D  +G L     AA+         T+I +TG+ GKT+   ++   +  + 
Sbjct: 75  TIAQVIVKDTDRAVGLL-----AAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMG 129

Query: 135 KTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------- 185
           +  A  G+   N  G+    A    D       +  + +   R +T  V  H        
Sbjct: 130 EKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALGRLA 189

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLK 236
                IA+ T +   HL     +EE   AK  +F    + LEK   + LN DD++ E   
Sbjct: 190 GVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE--- 246

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294
            +  A+    ++++G K++NADF   +   C    +M       S +V +  GI Y +  
Sbjct: 247 -RYAAMTPFPVWTYGLKNENADF---RAINCEYHDYM------TSFDVEMPEGI-YRVKM 295

Query: 295 NMLMTLGIVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           N+L    I ++L A          +++ I+ +    P +GR ++    L    F  ID  
Sbjct: 296 NLLGEFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSELPVQIF--ID-- 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P +++ AI       P+ +G+ I ++G
Sbjct: 352 YAHTPDAIEKAIEAA---QPYKKGKLIFLVG 379


>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 482

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 159/395 (40%), Gaps = 49/395 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163
           TT   +L             I +  N+I             P+TL R+          + 
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYV 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    + + R     ++    + T +   HL     +E    AK + F+ L K+   
Sbjct: 176 FMEVSSHSIAQKRISG--LKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD    ++   + +     +Y++      DF+ R      E  +  + L   + E+
Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D
Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
            ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 159/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D     VDF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
 gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
          Length = 482

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 159/395 (40%), Gaps = 49/395 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163
           TT   +L             I +  N+I             P+TL R+          + 
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYV 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    + + R     ++    + T +   HL     +E    AK + F+ L K+   
Sbjct: 176 FMEVSSHSIAQKRISG--LKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD    ++   + +     +Y++      DF+ R      E  +  + L   + E+
Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D
Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
            ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Rickettsia typhi]
          Length = 492

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 160/378 (42%), Gaps = 52/378 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+S +S+++   E FFA+KG + DG+DFI  A+  GA LV+        I      V 
Sbjct: 14  INGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK----VI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +I++TG+ GK++    +      ++K  A IG+    
Sbjct: 70  YVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGLE 129

Query: 147 I-GVPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IAV 188
           I G    +  +P    +D+  F     +L E  I +L      H             I  
Sbjct: 130 IFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIVS 189

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T+ +  HL      E    AK ++F + L  +G   LN D    E +K       +K I
Sbjct: 190 FTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKFI 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---------AQNMLM 298
            + GK    D Q+ K   CS        L G++++ + + I Y++         A N+L+
Sbjct: 250 -TVGKK--GDVQITKI-TCS--------LTGQNIDFIFNNIIYNLHTLIIGSFQASNLLI 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +       D  I+ALS   P +GR +R       G    +D  Y+  P +++ A+ 
Sbjct: 298 AALTLYYTGFKFDEIIEALSKVKPVKGRMERI-----DGTNIFVD--YSHTPDALEKALI 350

Query: 359 VLSQISPHGEGRRIAVLG 376
            L  I PHG G+   + G
Sbjct: 351 ELQNIKPHG-GKLSVIFG 367


>gi|260463536|ref|ZP_05811735.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030627|gb|EEW31904.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 434

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 6/154 (3%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFGIFE 166
           T I +TGS GK+T   +L   L++ + TYA +   ++N+ +           +VD+ +FE
Sbjct: 31  TFIGVTGSSGKSTVTALLGHILAAHRPTYARVLANTFNSLVSTLYKRMTQAGEVDYVVFE 90

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            G S +  IR +  +++PH+AV+T +   H++ F  +E +A  K  +   L   G   LN
Sbjct: 91  AGASGIDTIRPMAEMLQPHVAVVTMVRLEHVARFRTLENVAVEKRAMVSALRPDGLAVLN 150

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            DD +   + A +   G + + +FG ++ AD+++
Sbjct: 151 ADDPYVADMAAGA---GCRVV-TFGMAETADYRV 180


>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 494

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 163/388 (42%), Gaps = 70/388 (18%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++      + +PV 
Sbjct: 24  ITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAEREL-----DVDVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V   L AL+ L+ A   +   K  +I ITG+ GKT+T  M+   L    K    IG+  
Sbjct: 79  IVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKRTGLIGTMY 138

Query: 145 NHIG---VPL------------TLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG   +P+            T  +M    VD  I E+  SH   LG +    H     
Sbjct: 139 MKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVS-SHALSLGRV----HGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236
           IAV T +   HL     ++E   AK+ +F  L      E      LN DD   ++FE + 
Sbjct: 194 IAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFEKVT 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +H      I ++G   NAD   +          + +  QG S ++V +    H+  ++
Sbjct: 254 A-AH------ISTYGIKNNADVMAKN---------ITITAQGTSFDLVTNKGTKHITMSL 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHP-----KEGRGKRYRCAL---NQGFFTLIDESYNA 348
           +    + ++L A V T I A   F       +E  G R R  L    Q F  ++D  Y  
Sbjct: 298 VGQFNVYNVLAA-VATCIAAGIPFETITAAVEELHGVRGRFELVNQQQEFPVIVD--YAH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P S++   +VL+      EG+   V+G
Sbjct: 355 TPDSLE---NVLNTCRDMTEGKLFVVVG 379


>gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
 gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
          Length = 484

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 49/375 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ ++  +     F  +KG  +DGH      + KGA ++V + D+    G   +   
Sbjct: 23  VTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDI--KCGKQLV--- 77

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             D+    L +L  +   +   K  ++A+TG+ GKTTT   +   L+++ K   C+G+  
Sbjct: 78  -TDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCGCVGTAG 136

Query: 145 NHI----------GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVR 183
           N            G P T+ R  V             D+ + E     L + R      R
Sbjct: 137 NDTCSGELKPSQHGTP-TVPRATVLYSWLGEMVSNGADYCVMEASSQALDQYRIGDE--R 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A  T +   HL     +E    AK  +F   +   T  +N DD + + L  +   + 
Sbjct: 194 IAVAGFTNLTRDHLDYHGTMENYFQAKRRVFTMCK---TAVINIDDEYGKRLAQEFSDIA 250

Query: 244 IKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLG 301
           +    ++    NAD+     +   +  S+M V  + K+   V  +  G +  QN L  + 
Sbjct: 251 V----TYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQNSLCAIA 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V+ L  D+    KALS     +GR       + +G FT+I +  + + A +K    VLS
Sbjct: 307 MVTALGFDMTECAKALSDLDGVDGRMN----VVYRGDFTVITDYAHTDDALIK----VLS 358

Query: 362 QISPHGEGRRIAVLG 376
            + P  +GR I V G
Sbjct: 359 TLKPLTKGRLICVFG 373


>gi|330813730|ref|YP_004357969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486825|gb|AEA81230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 155

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 7/141 (4%)

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG +    +      +IDESYNANP SMK AI   S  + H + ++IA++GDM E+G+ 
Sbjct: 16  GRGNKIIKIIKGKKVHIIDESYNANPISMKNAIENFSLFNSHKK-KKIAIIGDMLELGQK 74

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSL 441
           S+ +H+++A++L+   I  ++L G  V+ + + L ++     S+ +     LFL I +  
Sbjct: 75  SKFYHLEVAKILNKAEIDEIYLVGKEVVHIYNQLKKTKTCFISKDIVHFKSLFLKIAN-- 132

Query: 442 VDGDVVVVKSSNSCGFYRLIN 462
            +  + ++K SN  G  +L+N
Sbjct: 133 -EKSIFLIKGSNGIGLNKLVN 152


>gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
          Length = 521

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 163/401 (40%), Gaps = 83/401 (20%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V  ++ DSR + P   F A++G   DGH FI  AV++GAG V+             IP
Sbjct: 35  GEVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERGAGSVICE----------EIP 84

Query: 85  VFGVDD------VLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSI 133
             G++D      V  A   LA AARL       +  II +TG+ GKTTT +++T  L++ 
Sbjct: 85  S-GIEDGVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTTSKLITSMLNA- 142

Query: 134 KKTYACIGSYNNHIGVPL-TLA--RMPVD----------------VDFGIFELGM---SH 171
            +  +C      +IG  L T A   +P+D                VD G   + M   SH
Sbjct: 143 -RGISC-----GYIGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVMEVSSH 196

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              ++ + H +R   AV T + P HL     +E  ASAK  +F+ L   G   LN DD  
Sbjct: 197 ALMLKRV-HGIRFRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTPDGFAVLNRDDPA 255

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              + A+   +  + IY    S   D  L     C    + E+   G S  +    +  H
Sbjct: 256 APFMAAR---VLPEKIYCCSLSARQDTSL----ACGNSFFAEI--TGAS--IASSRVALH 304

Query: 292 MAQ----------------NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             +                NML    +   L  D D   +ALS+    EGR +R   + +
Sbjct: 305 FPETVVSIEVRLPGSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCS 364

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            G    +D  Y   P ++   +S L  +      R I V G
Sbjct: 365 GG-MAFVD--YAHTPDALFKVLSTLRDLKDE-HSRLIVVFG 401


>gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 460

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 8/292 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TG+ GKTTTK+M    L    KT   + S N        L ++   V+  ++E  +
Sbjct: 106 VIAVTGTCGKTTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAV 165

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +  G I+  +   +P I +IT I   HL     +E    AK E+ + + + GT+ LN DD
Sbjct: 166 AAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADD 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               + K        K IY +G  +NAD+Q    +   +     + +  K  +V   G G
Sbjct: 226 D--NIKKISLEDFKGKIIY-YGVGENADYQASNIEFVPKGMSYILTVNNKRYKVFIPGYG 282

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N +  +     +      +IK L  F       +  +  LNQ    LI +++N N
Sbjct: 283 VHQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMK-GLNQ--CQLIVDTWNIN 339

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           P S++A+I  + +I+ +   ++IA++G +  +G+ S+  H  + +++  Y++
Sbjct: 340 PTSLEASIKTMCEIAKN--RKKIALVGSIDALGKNSRQLHQKVGDMICQYDL 389


>gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 482

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 159/395 (40%), Gaps = 49/395 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163
           TT   +L             I +  N+I             P+TL R+          + 
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYV 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    + + R     ++    + T +   HL     +E    AK + F+ L K+   
Sbjct: 176 FMEVSSHSIAQKRISG--LKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD    ++   + +     +Y++      DF+ R      E  +  + L   + E+
Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L   G   +L    +  + ALS  HP  GR    R  L  G   ++D
Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPL--GVTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
            ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chitinophaga pinensis DSM 2588]
 gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis
           DSM 2588]
          Length = 488

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 140/352 (39%), Gaps = 52/352 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +    +       VN +SIDSR++    AF AIKG H DGH FI  A+ +
Sbjct: 1   MKTLRDILYNVSIREVHGSTDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-NKLAVAARL---------RSKATIIAI 113
           GA +++             +P    DD+   L N  A AA +           K  ++ +
Sbjct: 61  GAAVIICE----------ELPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGV 110

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMS 170
           TG+ GKTT   +L    S ++     + +  N IG   VP T    P  +        M 
Sbjct: 111 TGTNGKTTIATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHT-TPDAIHLNALLADMV 169

Query: 171 HLG-EIRFL---THLV-RPHIA-------VITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             G E  F+   +H V +  IA       + + I   HL      +E    K   F+GL 
Sbjct: 170 DEGCEYVFMEVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDGLP 229

Query: 219 KTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            T     N DD       +  +AK  +  +KT+        ADF+     +  E +   +
Sbjct: 230 TTAFALTNLDDKRGNVMLQNTRAKKQSYSLKTV--------ADFK----GKILENNLTGL 277

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +     EV    IG   A N+L   G   +L  D D  ++ALS     EGR
Sbjct: 278 IMTVNEKEVHFRLIGEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGR 329


>gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
 gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
          Length = 511

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 153/363 (42%), Gaps = 45/363 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VF 86
           ++ +S+ + P+  F A++G   DGH FI  A+++GA  V V  + V    +   P     
Sbjct: 40  LTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGA--VAVVGEFVPEAFAERFPKASFV 97

Query: 87  GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V +   AL  LA       A RLR    +I ITG+ GKTTT  ++   L++I +    I
Sbjct: 98  QVSNSRRALGILATIFHMNPARRLR----LIGITGTNGKTTTAFLVYHMLNAIGQETGLI 153

Query: 141 GSYNNHIG---VPLT------------LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+     G   +P +            L RM  V     + E+  SH  E   +  L   
Sbjct: 154 GTVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVS-SHALEQERVAGLSF- 211

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV T +   HL      E    AK ++F+GL    T   N DD     + A + A  I
Sbjct: 212 SIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRATALYNIDDPSGPAMVADTQACCI 271

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S+G+ ++A  ++R      E   + +  + +   +V    G   A N+L   G+  
Sbjct: 272 ----SYGQREDAQIRMRIVGHSLEGLTLNIDGRFQRFPLV----GCFNAYNLLAAYGVGR 323

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  D D  ++AL       GR +R+      G   ++D  Y   P +++  +  + ++ 
Sbjct: 324 AMGLDPDLLLEALGRVPQIPGRFERF--TFEDGTTAIVD--YAHTPDALENVLRTIREVM 379

Query: 365 PHG 367
           P G
Sbjct: 380 PEG 382


>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
 gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
          Length = 485

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 150/366 (40%), Gaps = 30/366 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR IA    F A+KG   DGH FI  A+++GA + V+  DM  ++   ++   
Sbjct: 23  ITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQGA-VAVLLEDMPNTLND-NVTYV 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+       K+A         K  ++ +TG+ GKTT   +L             + +  
Sbjct: 81  QVESTENTAGKVATLFYGDPSHKLKLVGVTGTNGKTTIATLLYNMFREFGYKVGLLSTVC 140

Query: 145 NHIGVPLTLA--RMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVIT 190
           N+I      A    P  ++       M   G E  F+   +H +  H         A+ T
Sbjct: 141 NYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFMECSSHAIHQHRIGGLDFTGAIFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E   +AK   F+GL K      N DD    ++   + A    TI ++
Sbjct: 201 NLTRDHLDYHKTFENYRNAKKMFFDGLSKHAFAITNADDKNGMIMVQNTKA----TIKTY 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              + ADF+ +  +   E  ++E+   GK + V    IG     N+L   G   +L    
Sbjct: 257 STKRMADFRAKILECHFEGMYLEI--DGKEVGV--QFIGKFNVSNLLAVYGAAKMLGKST 312

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + ALS      GR +  +    +GF  ++D  Y   P +++  ++ +  +  +  G 
Sbjct: 313 DEILLALSTLKSVNGRLEPIQSP--EGFTAIVD--YAHTPDALENVLTAIHDVLDNKGGH 368

Query: 371 RIAVLG 376
            I V G
Sbjct: 369 IITVCG 374


>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 493

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 35/372 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85
           +  +  DSR + P + F A +G + DG DFI  A++KGA  V+ +  D  A       P 
Sbjct: 23  IKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAVLWDEADGFAWKAEWQAPN 82

Query: 86  FGVDDV-----LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V ++     + A + L + +R     T++ ITG+ GKT+    L  A S + +  A I
Sbjct: 83  LAVPNLRERAGIVAAHVLGLPSR---DLTVVGITGTNGKTSISHWLAQAFSLLGQKAALI 139

Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHI 186
           G+  N    H+         PV V   + E          + +S  G  +F  + V    
Sbjct: 140 GTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQFRVNGVEFAT 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           AV T +   HL     +E    +K ++F  EGL+      +N DD+F   L A       
Sbjct: 200 AVFTNLTRDHLDYHGSMEAYGESKKKLFFWEGLKHA---VINADDAFGRQLAAGIDPKQT 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + ++G  +  D +        E   + V     +++V    +G   A N+L  L  + 
Sbjct: 257 RVV-TYGLEQG-DVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAANLLACLATLC 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +  A   ++   P  GR +    ++      L+   Y   P +++ A++ LS+I 
Sbjct: 315 VNGVSLQDAAAVMARIQPARGRMQ----SVGGAHEPLVVIDYAHTPDALEKALATLSEIR 370

Query: 365 PHGEGRRIAVLG 376
           P G GR   V G
Sbjct: 371 PAG-GRLFCVFG 381


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Laribacter hongkongensis HLHK9]
 gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
          Length = 491

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 161/393 (40%), Gaps = 49/393 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPVFGV 88
           ++ DSR + P + F A +G + DG ++I  A+ +GA  V  +  D        ++P   V
Sbjct: 26  VTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNLPV 85

Query: 89  DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145
            D+      +A  +  R     T+I +TG+ GKT+    L  A + + +  A IG+  N 
Sbjct: 86  PDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTVGNG 145

Query: 146 ----------HIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                         P+T+ R   D       +  + +S  G  +F  + V    AV T +
Sbjct: 146 FFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
              HL     +    + K  +F  +GL+      +N DD F   L ++  A     + ++
Sbjct: 206 TRDHLDYHGSMAAYGATKERLFHWQGLQHA---VINVDDQFGRELASRCTA---GQVITY 259

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HG------IGYHMAQNMLMTLG 301
           G  ++ D +            +   L+G +ME+     HG      +G   A N+L  L 
Sbjct: 260 GL-EHGDVRPMA---------VHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLA 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++ +    +  A + L    P   RG+  R    +    +ID  Y   P +++ A+S L+
Sbjct: 310 VLCVNGVPLTQACRVLGQIQP--ARGRMQRVGGTREPLVVID--YAHTPDALEKALSTLA 365

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            I P G GR  AV G   +     +    D+AE
Sbjct: 366 DIKPAG-GRLFAVFGCGGDRDRGKRPLMGDIAE 397


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 166/401 (41%), Gaps = 46/401 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPV 85
           + GI+ +S+ +    AFFAIKG   DGH+FI  A++ GA ++ +  +  V S+   +I V
Sbjct: 22  IEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYVESLKGKNITV 81

Query: 86  FGVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
              D+       LA+A+         K  +IAITG+ GKTTT  +L             I
Sbjct: 82  VLTDN---GRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAGYKVGVI 138

Query: 141 GSYNNHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  +G  +               TL  M     D  + E+  SH  + ++  +  + 
Sbjct: 139 GTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVS-SHAAD-QYRVYSTKF 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFE--LLKAKS 239
           H  + T +   HL     +E    AK  IFE ++   K     +N DD +    L   K+
Sbjct: 197 HGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIYSINVDDEYGRRILDYLKN 256

Query: 240 H-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNML 297
           H  +    I ++GK+ + DF++  ++     S  E +   K  + +           N+ 
Sbjct: 257 HLKVNDDKIITYGKT-SEDFKILDYR----LSLFETEFSYKYKDTLSKIKTKLRGVFNIY 311

Query: 298 MTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                VS L  D  D         H K  +G R+     QGF  +ID  Y   P +++  
Sbjct: 312 NLSAAVSFLIKDGFDLKFLEEKALHLKPIKG-RFEVIEGQGFIVVID--YAHTPDALENI 368

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +  L++I    E R IAV G      +  +    + AE LS
Sbjct: 369 LKSLNEIK---ENRIIAVFGAGGNRDKTKRPLMGETAEKLS 406


>gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 506

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 45/384 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G+ P   VN    DSR  AP + F A  G   DG DFI  AV +GA  V+   D     
Sbjct: 29  LGLAPGELVN----DSRRAAPGKVFVAYPGDARDGRDFIPQAVAQGADGVLWEADHYQWD 84

Query: 79  GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +L+IP  GV  +   + ++A  V         +I +TG+ GKT+    +  ALS++ + 
Sbjct: 85  PALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTNGKTSVAHWIAQALSALGRK 144

Query: 137 YACIGSYNNHIGVPLT----------LARMPVDVDF----------GIFELGM--SHLGE 174
            A IG+  N  G P T          L   P  ++           G     M  S  G 
Sbjct: 145 TAIIGTVGN--GFPSTGDTPAALTPALNTTPDAIELQQRLARYRGEGAVACAMEVSSHGL 202

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            +   +  R  +AV+T ++  HL     ++  A+AKA +F   +    + LN DD+F + 
Sbjct: 203 AQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLFNWPDLEWAV-LNVDDAFGQR 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHM 292
           L+ ++       +  +G  + A   + +  Q S Q+ M + LQ      E+    +G   
Sbjct: 262 LEGETRP---ARVAGYGFQRGA--VVARGLQLS-QAGMHLALQTDWGDAEIDAPLLGRFN 315

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+L  L  + +    +D A +AL+   P  GR +     L      L+   Y+  P +
Sbjct: 316 AANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQ----TLGGEAHPLVVVDYSHTPDA 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++  ++ L +I+  G GR I V G
Sbjct: 372 LEKVLATLREIA--GGGRLICVFG 393


>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
 gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
          Length = 482

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 159/388 (40%), Gaps = 39/388 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+AIQ   I       + G++IDSR I     F A++G   DGH +I  A++KGA  V
Sbjct: 5   DLLKAIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYIPAAIEKGA--V 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            +  +         I    V D   A+ K A        SK  ++ +TG+ GKTT   +L
Sbjct: 63  AILCEEWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170
                        I +  N+I             P+TL R+  ++      +   E+   
Sbjct: 123 YDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R     ++    + T +   HL     +E    AK + F+ + K+     N DD 
Sbjct: 183 SIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEMPKSAFSLTNLDDR 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+     +  E  +  + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R    +G+  ++D ++  + 
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--KGYTAIVDYAHTPD- 349

Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376
               A ++VL+ I     G+G+ I V+G
Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 159/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PNAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas mossii DSM 22836]
          Length = 483

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 41/391 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL+ I    I       V G+  DSR   P   F A+KG   DGH +I +A++ GA 
Sbjct: 3   LQDLLKNIDVIEIKGEQDINVTGVFTDSRKATPGSVFIALKGVQVDGHLYIKNALELGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
           +++    +  S  +  I    V D   A  K+A        +   ++ +TG+ GKTTT  
Sbjct: 63  VILHENKIDTS--NEGITYIKVKDSADAAGKIATHWYGDPSNNLKLVGVTGTNGKTTTAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVD-VDFGI---FELGM 169
           +L      +      + +  N+I             P++L  M  + VD G    F    
Sbjct: 121 LLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKNMVDAGCEYAFMEVS 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH    + ++ L +    + T +   HL     + E   AK   F+ L  T     N DD
Sbjct: 181 SHAIHQKRISGL-KFEGGIFTNLTQDHLDYHKTMGEYLKAKKAFFDQLPDTAFALTNIDD 239

Query: 230 S----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  +  KAK+    + ++        ADF+ R  ++  + + +E+   GK ++V  
Sbjct: 240 KNGLVMLQNTKAKTSTYSVHSL--------ADFKARIIEKHFDGTAIEI--NGKELQV-- 287

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L   G   +L    + A+  LS   P  GR +  R +  QGF  ++D  
Sbjct: 288 QFVGVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSS--QGFTAIVD-- 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P ++   +  + ++   G GR I V+G
Sbjct: 344 YAHTPDALTNVLEAIHEV-LEGNGRVITVVG 373


>gi|218886345|ref|YP_002435666.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757299|gb|ACL08198.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 546

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 122/306 (39%), Gaps = 24/306 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DF 162
           LR   T+IA+TGS GKT+ K +L   L     T    GS N  +G+   +     D   F
Sbjct: 173 LRLAPTVIAVTGSYGKTSVKHILAHVLGCYHPTLMTPGSINTPMGISRIIRERLTDAHRF 232

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG- 221
            I E+G   +G I  L  L  P  A+IT + PAH   F  +  +  AK E+       G 
Sbjct: 233 FIAEMGAYGIGSIERLCRLAPPDFAIITNVGPAHYERFKDLATVVRAKFELAHATVARGG 292

Query: 222 -----TIFLNYDDSF-FELLKA----KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                   L YD +  F    A    +     +      G +  A+  +R      + S 
Sbjct: 293 RVVLPAALLAYDHARDFAAANAGAVLRCAGADVNADAGAGGAGVAEPSVRVLDAGQDLSG 352

Query: 272 MEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGR 326
           +  +L  Q +  EV     G H   N+ +       V +    V +A+++L         
Sbjct: 353 IHARLLYQEQEYEVRAPIHGMHHVDNVALAFAAACGVGVEPQRVVSALRSLPQI------ 406

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R           LID++YN+NP+   +A+ +L      G+ R + V   M E+G L  
Sbjct: 407 AHRLEVKPQPDGSVLIDDAYNSNPSGFASALDLLDLYRKSGQ-RGVLVTPGMVELGTLHD 465

Query: 387 SFHIDL 392
           S H +L
Sbjct: 466 SAHAEL 471


>gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
 gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
          Length = 494

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 154/372 (41%), Gaps = 33/372 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLS 82
           V G+S+DSR + P   F A+ G    G  F+  A+++GAG V+ +         ++   +
Sbjct: 23  VTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGEDTARQALAGGT 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------EMLTIAL 130
           +P+  V+D   AL+  A        AT++A+TG+ GKT+              +   I  
Sbjct: 83  VPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQALGLDAANIGT 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185
           + ++  +A   S+      P+TL R+  +     V     E     L + R    +++  
Sbjct: 143 TGVEGAFAAPSSHTTP--EPITLHRLLAEMAAAGVTHAAMEASSHGLAQRRLDGVMLK-- 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T     HL   +  +E   AKA +F   L + GT  +N DD    +L  ++ A G 
Sbjct: 199 AAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVLVERARARGQ 258

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K I   G+    + QL+  +  +    +    QG    V    IG   A N+L   G+V 
Sbjct: 259 KLIR-VGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMNVLTAAGLVI 317

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A+     + L       GR +      N G    +D  Y   P +++ A+  L    
Sbjct: 318 ACGAEPKAVFEVLPQLATVRGRMQLAATRTN-GATVFVD--YAHTPDAVETALRAL---R 371

Query: 365 PHGEGRRIAVLG 376
           PH  GR IA++G
Sbjct: 372 PHVLGRIIAIVG 383


>gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 459

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 175/388 (45%), Gaps = 36/388 (9%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           G + I V  +DD   A        R      ++A+TG+ GKTTTK+M+   LS+  K   
Sbjct: 78  GCIVIRVSDIDDAYDAFIHFY---RQLFDIPVVAVTGTSGKTTTKDMIKHILSTWYKVEG 134

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            + S N +    + L R+   +   ++E  +   G+I +      P+I +IT I   HL 
Sbjct: 135 TVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAPGDITYTCSHFLPNIGIITNIGIDHLE 194

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               ++   +AKAE+   + + GT+ LN DD   E +K    +     I  FG      F
Sbjct: 195 RCKTLQGYINAKAEMVSVIPEGGTLILNADD---EKIKTIDTSKCKGNIIYFGIDTPCLF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q       +      + L     ++   G G H   N L  L     +   +  A +ALS
Sbjct: 252 QASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALAALAATHEMGIGITQAAQALS 311

Query: 319 VF-----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            F     H +  +G      LNQ   T+ID+++N N AS+KAA++ L +++   + +++A
Sbjct: 312 SFKLLMNHCEIKKG------LNQA--TIIDDTWNINTASLKAAMNTLCELNQ--QHKKVA 361

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------------LSGFHVLALKDALP 419
           ++G + ++GE S  +H ++ ++++ +NI ++               L+GFH    +    
Sbjct: 362 LIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLANNIATECSLNGFHGKVFQFEQT 421

Query: 420 RSIHVHYSETM-DGLFLFIQSSLVDGDV 446
             ++   S+ + +   L I+ S+ D D+
Sbjct: 422 EGVYELLSDILNEETTLLIKCSMFDYDI 449


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 483

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 165/385 (42%), Gaps = 36/385 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+ +     G  P   ++G+  DSR    +  F AIKG   DG  ++  A++ GA  V
Sbjct: 5   DILKGVNCEIKG-DPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V + ++    G   I    V+D   A+ K+A        SK T+I +TG+ GKT+   ML
Sbjct: 64  VTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L         +G+  N IG  V  ++   P  +D       M + G ++++   V  
Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H             IAV T ++  HL     +EE A  K+++F+ + K+ ++ +N DD +
Sbjct: 180 HSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFK-MAKSASV-INIDDKY 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++   S A     + ++G    A    +  +   +    +VQ++ K  E+     G  
Sbjct: 238 SSMMIESSKA----KVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGIF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   + +  +ALS    K   G+       + F+ +ID  Y   P 
Sbjct: 294 SVYNALAAITVADFLGISLRSVREALSQVTVK---GRFELVETGKDFYVIID--YAHTPD 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
            ++   +++  +  +  GR+I + G
Sbjct: 349 GIQ---NIMEALKEYKTGRKILLFG 370


>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
 gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
          Length = 483

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 157/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   I       + GI+IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEK------PVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163
           TT   +L             I +  N+I             P+TL R+          + 
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYA 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    + + R     ++    + T +   HL     +E    AK + F+ L K    
Sbjct: 176 FMEVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFS 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD    ++   + +     +Y++     +DF+ R      E  +  + L   + E+
Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L   G   +L    +  + ALS  HP  GR    R     G   ++D
Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRS--KDGVTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ +  +   G+G+ I V+G
Sbjct: 344 --YAHTPDALTNVLNAIHGVL-EGKGKVITVVG 373


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A+ + T  SF       K+ +  F L+  K   E SW   +L  +        IG   
Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
             N+L  L  + +L  D+   I+   +    +G   R  C ++Q         L+D  Y 
Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A   L     H EG    + G
Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394


>gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
 gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
          Length = 476

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 156/374 (41%), Gaps = 42/374 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G +ID R +AP   F A +G   +G DFI  AV+ GA + VV    V   G++ I  
Sbjct: 18  LVTGFAIDHRKVAPGTIFGAFQGARVNGEDFIADAVRSGA-IAVVTRPGVTVEGAVHI-- 74

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              D+   A  +LA A      AT +A+TG+ GKT+T EM            A IG+   
Sbjct: 75  -ASDEPRAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMTRQLWRMAGHHAASIGT--- 130

Query: 146 HIGVPLTLAR------MPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIA 187
            +GV     R       P  V F     G+   G++HL       G  ++ T  +    A
Sbjct: 131 -LGVTTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSHGLTQYRTEGLEVSAA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDD----SFFELLKAKSHAL 242
             T ++  HL     +    +AK  +F E L  TGT  +  DD       +L +A+ + L
Sbjct: 190 AFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQSGRVIDLARARGNRL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 + G   +    + +      Q  +     G   +V    IG + A N L++ G+
Sbjct: 250 -----MTVGTRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQAANALVSAGL 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V     DV T +  LS   P  GR +R   A   G    +D  Y   P +++AAI+ L  
Sbjct: 305 VLATGGDVTTTLANLSRLQPVRGRLERAAIA-RSGAPVYVD--YAHTPDALEAAIAAL-- 359

Query: 363 ISPHGEGRRIAVLG 376
             PH  GR I V G
Sbjct: 360 -KPHAGGRLIVVFG 372


>gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 460

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 8/292 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TG+ GKTTTK+M    L    KT   + S N        L ++   V+  ++E  +
Sbjct: 106 VIAVTGTCGKTTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAV 165

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +  G I+  +   +P I +IT I   HL     +E    AK E+ + + + GT+ LN DD
Sbjct: 166 AAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADD 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               + K        K IY +G  +N+D+Q    +   +     + +  K  +V   G G
Sbjct: 226 D--NIKKISLEDFKGKIIY-YGVGENSDYQASNIEFVPKGMSYILTVNNKRYKVFIPGYG 282

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N +  +     +      +IK L  F       +  +  LNQ    LI +++N N
Sbjct: 283 VHQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMK-GLNQ--CQLIVDTWNIN 339

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           P S++A+I  + +I+ +   ++IA++G +  +G+ S+  H  + +++  Y++
Sbjct: 340 PTSLEASIKTMCEIAKN--RKKIALVGSIDALGKNSRQLHQKVGDMICQYDL 389


>gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 459

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 175/388 (45%), Gaps = 36/388 (9%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           G + I V  +DD   A        R      ++A+TG+ GKTTTK+M+   LS+  K   
Sbjct: 78  GCIVIRVSDIDDAYDAFIHFY---RQLFDIPVVAVTGTSGKTTTKDMIKHILSTWYKVEG 134

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            + S N +    + L R+   +   ++E  +   G+I +      P+I +IT I   HL 
Sbjct: 135 TVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAPGDITYTCSHFLPNIGIITNIGIDHLE 194

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               ++   +AKAE+   + + GT+ LN DD   E +K    +     I  FG      F
Sbjct: 195 RCKTLQGYINAKAEMVSVIPEGGTLILNADD---EKIKTIDTSKCKGNIIYFGIDTPCLF 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q       +      + L     ++   G G H   N L  L     +   +  A +ALS
Sbjct: 252 QASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALADLAATHEMGIGITQAAQALS 311

Query: 319 VF-----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            F     H +  +G      LNQ   T+ID+++N N AS+KAA++ L +++   + +++A
Sbjct: 312 SFKLLMNHCEIKKG------LNQA--TIIDDTWNINTASLKAAMNTLCELNQ--QHKKVA 361

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------------LSGFHVLALKDALP 419
           ++G + ++GE S  +H ++ ++++ +NI ++               L+GFH    +    
Sbjct: 362 LIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLANNIATECSLNGFHGKVFQFEQT 421

Query: 420 RSIHVHYSETM-DGLFLFIQSSLVDGDV 446
             ++   S+ + +   L I+ S+ D D+
Sbjct: 422 EGVYELLSDILNEETTLLIKCSMFDYDI 449


>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
 gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
          Length = 483

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 36/385 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+ +     G  P   + G+  DSR    +  F AIKG   DG  ++  A++ GA  V
Sbjct: 5   DILKGVNCEIKG-DPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAV 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           VV+ ++    G   I    V+D   A+ K+A        +K T+I +TG+ GKT+   ML
Sbjct: 64  VVDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L         +G+  N IG  V  ++   P  +D       M + G ++++   V  
Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H             IAV T ++  HL     +EE A  K+++F+  ++   I  N DD +
Sbjct: 180 HSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVI--NIDDKY 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++   S A     + ++G    A    +  +   +    +VQ++ K  E+     G  
Sbjct: 238 SSMMIESSKA----KVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGLF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   + +  +ALS    K   G+       + F+  ID  Y   P 
Sbjct: 294 SVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
            ++  +  L +   +  GR+I + G
Sbjct: 349 GIQNMMEALKE---YKAGRKILLFG 370


>gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 501

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 152/384 (39%), Gaps = 50/384 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR ++  + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT  ++L    + +  
Sbjct: 84  LDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238
             +   +AV T ++  HL     +EE A AK  +F  L     + LN DD    E L   
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQV-LNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +A+ + T  SF       K  +  F L+  K   E SW    L  +        IG   
Sbjct: 261 PNAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRL-------IGAFN 313

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  L  + +L  D+   I+   +     GR +      N     L+   Y   P +
Sbjct: 314 VNNLLTALASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDA 373

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++ A   L     H EG    + G
Sbjct: 374 LEKA---LQAARLHTEGELYCIFG 394


>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
 gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
          Length = 484

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 151/371 (40%), Gaps = 42/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR + P   F AI+G   DGH FI  A+  GA  VVV  D+    G   + V 
Sbjct: 23  IKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVVVTRDVPLPDG---VSVV 79

Query: 87  GVDDVLGALNKLAVAARLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            V+D     ++L++AA  R+       +  +I +TG+ GKT+   M+   L    +    
Sbjct: 80  KVED-----SRLSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVKSILEQSGRKVGL 134

Query: 140 IGSYNNHIG-VPLTLARMPVD-----------VDFGIFELGMSHLGEIRFLTHL--VRPH 185
           IG+  N IG V L   R   +            D GI ++ M        L  +   R  
Sbjct: 135 IGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEVSSHSLALNRVAGCRFD 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I + T +   HL   S +++  +AK ++F   + +G I  N DDS+   LK        K
Sbjct: 195 IGIFTNLTEDHLDFHSNMDDYFAAKLKLF---QNSGLIATNVDDSYGVKLK---DMFVSK 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+Y++G  + A          ++ S  ++ + G    V+ +  G     N L        
Sbjct: 249 TVYTYGIEREAHVTASNILSDAKGSTFDIDICGDRRPVIINIPGRFSVYNALAAAAACYA 308

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D   K L       GR +      +  F  +ID  Y   P  ++   ++L  +  
Sbjct: 309 MGVSADDISKGLQALKSVPGRFE--VLGTDTDFTVIID--YAHTPDGLE---NILKSVKD 361

Query: 366 HGEGRRIAVLG 376
             +GR IA+ G
Sbjct: 362 IAKGRVIALFG 372


>gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [NC10 bacterium 'Dutch sediment']
          Length = 568

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 125/292 (42%), Gaps = 16/292 (5%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMP 157
           A A   R    +I ITGS GKTTTK +    L      +      N  +G V +    + 
Sbjct: 206 ATARMRRYPGEVIGITGSYGKTTTKFITAALLHGRYPVFKTPDGVNTTMGIVRVVREGLR 265

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  F + E+     GEIR +  ++RP I ++T +   HL  F   E IA AK E+ + L
Sbjct: 266 DDHRFFVVEVAAYGPGEIREVCEVLRPRIGILTAVGVQHLERFGTPERIAEAKYELIDSL 325

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNA-DFQLRKWKQCSEQSWMEVQ 275
              G   +N DD     L  ++   G +  +Y  G+ + A   + +     S+ S   V+
Sbjct: 326 PPDGLAIVNADDPVCLRLAERARQEGRRVLLYGIGEDERALGVRGKDVTLSSKGSAFRVE 385

Query: 276 L-QGKSMEVVHHGIGYHMAQNMLMTLGIVS--ILTADVDTAIKALSVFHPKEGRGKRYRC 332
              G +M       G+++   +  T   +   +   ++   ++AL+   P     KR   
Sbjct: 386 TGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIAAGVRALA---PAP---KRLEI 439

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               G   LID + NANP   + A+ VLSQ      G +I +   + E+G++
Sbjct: 440 REEGGVIKLIDVA-NANPRGAQMALEVLSQFE---GGSKILITPGLVELGQI 487


>gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 483

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 168/389 (43%), Gaps = 44/389 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+ +     G  P   ++G+  DSR    +  F AIKG   DG  ++  A++ GA  V
Sbjct: 5   DILKGVNCEIKG-DPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V + ++    G   I    V+D   A+ K+A        SK T+I +TG+ GKT+   ML
Sbjct: 64  VTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L         +G+  N IG  V  ++   P  +D       M + G ++++   V  
Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H             IAV T ++  HL     +EE A  K ++F+ + K+ ++ +N DD +
Sbjct: 180 HSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFK-MAKSASV-INIDDKY 237

Query: 232 FELL----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             ++    KAK    GIK  +++  +K+    L   K        +VQ++ K  E+    
Sbjct: 238 SSMMIESSKAKVLTYGIKD-FAYVMAKDIRNSLSGVK-------FKVQIEDKKEEISLKI 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  + +   L   + +  +ALS    K   G+       + F+ +ID  Y 
Sbjct: 290 PGIFSVYNALAAITVADFLGISLRSVREALSQVTVK---GRFELVETGKDFYVIID--YA 344

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P  ++   +++  +  +  GR+I + G
Sbjct: 345 HTPDGIQ---NIMEALKEYKTGRKILLFG 370


>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
 gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
          Length = 484

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 156/377 (41%), Gaps = 51/377 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G +ID+R +AP   F A +G   +G D+I  AV+ GA            I  ++ P  
Sbjct: 28  VTGFAIDNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGA------------IAIVARPEA 75

Query: 87  GVDDV--LGALNKLAVAARLRSK------ATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            VD    + A N   + A+L ++         +A+TG+ GKT+T E+       +    A
Sbjct: 76  QVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELARQIWRMLGHNAA 135

Query: 139 CIGSYN-----NHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHL 181
            IG+       + +   LT    P  V F     G+   G++H        G  ++ T  
Sbjct: 136 SIGTLGVTTSVDQVSTGLT---TPDIVTFLANMAGLRREGVTHAAFEASSHGLDQYRTEG 192

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240
           +       T ++  HL     ++    AK  +F E +   G+  +  DDS+ E   A++ 
Sbjct: 193 LPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDSWSEKAIARAT 252

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G++ + S G    A  QL           +E++ +G   +V    IG + A N L   
Sbjct: 253 KRGLR-VLSVGVQGRA-LQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGAYQAANALTAA 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
           G+V     D    ++ L    P   RG+  R  ++Q G    +D  Y   P  ++AAI  
Sbjct: 311 GLVIATGGDAARVMELLGRVQPV--RGRLERAVISQTGAPVYVD--YAHTPDGLRAAIEA 366

Query: 360 LSQISPHGEGRRIAVLG 376
           L    PH +GR I + G
Sbjct: 367 L---RPHTKGRLITLFG 380


>gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
 gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
          Length = 480

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 37/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G +ID+R +AP   F A +G   +G DFI  AVQ GA  VV   +     G++ I   
Sbjct: 24  VSGFAIDNRKVAPGTVFGAFQGARVNGEDFIPAAVQAGATAVVARPEARVE-GAIHI--- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
             D+      +LA           +A+TG+ GKT+T E+       +    A IG+    
Sbjct: 80  ASDNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVT 139

Query: 145 ---NHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
              + +   LT    P  V F     G+   G++H        G  ++ T  +    A  
Sbjct: 140 TSVDQVSTGLT---TPDIVTFLANMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL     ++    AK  +F E +   G   +  DD + + +  ++   G++ + 
Sbjct: 197 TNLSRDHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWADDEWSDKVIQRATKRGLR-VL 255

Query: 249 SFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           S G    A   LR   +   Q    ++++++GK+ +V    IG + A N L   G+    
Sbjct: 256 SVGVQGQA---LRLANRTPTQLGQTLDIEVEGKNYKVNLPLIGAYQAANALTAAGLAIAG 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    ++ L    P  GR +R       G    +D  Y   P  ++AAI  L    PH
Sbjct: 313 GEDAGKVLELLGRVQPVRGRLERA-VITKAGAPVYVD--YAHTPDGLRAAIEAL---RPH 366

Query: 367 GEGRRIAVLG 376
             GR IA+ G
Sbjct: 367 TRGRLIALFG 376


>gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 487

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 146/375 (38%), Gaps = 49/375 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR I+ Q+ F AIKG   DGH FI  AV  GA +VV        + S  IP  
Sbjct: 24  IKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGANVVV-----CEELPSEVIPEV 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML--------------- 126
               V      LAV A        +   +I +TG+ GKTT   +L               
Sbjct: 79  SYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTSLLYQMFKTLGYKVGLIS 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T+ +    K Y    +  + + +   L  M  V V+F   E+    + + R L   +   
Sbjct: 139 TVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVSSHGIAQHRTLG--LNFE 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241
             V T ++  HL       +    K   F+ L K G    N DD       +  KAK+  
Sbjct: 197 GGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQLSKKGFALTNVDDKNGNYMLQNTKAKTFG 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+K +         D++++      E+S+  ++L     EV    IG   A N+L    
Sbjct: 257 YGVKNL--------TDYKVK----ILEKSFSGLKLNINGTEVWSRFIGDFNAYNLLAVYA 304

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L       ++ LS   P EGR + +  +   G   ++D  Y   P +++  +   +
Sbjct: 305 VADLLEVKDIENLQNLSQLKPVEGRYQHHMSS--TGIHVIVD--YAHTPDALQNVLQTTN 360

Query: 362 QISPHGEGRRIAVLG 376
            I    E   I V+G
Sbjct: 361 DIRSRSE-ELITVVG 374


>gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
          Length = 848

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 146/358 (40%), Gaps = 30/358 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88
           +  DSR I   + F A +G + DG D+I  AV  GAG V  + D          +P   +
Sbjct: 60  LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRPEWDVPNQAI 119

Query: 89  DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143
            D+      LA  A   +     II +TG+ GKT+  + L  A   L    ++ A +G+ 
Sbjct: 120 PDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIVGTV 179

Query: 144 NNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            N     L              TL R           + +S  G  ++  +      AV 
Sbjct: 180 GNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRTAVF 239

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK-SHALGIKT 246
           T +   HL     +EE  + KA +F  +GL+      +N DD+F + L A+   +     
Sbjct: 240 TNLTRDHLDYHRSMEEYGAVKARLFHWQGLQNA---VINTDDAFGQQLCAELKRSESSLH 296

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +YS+G ++ AD ++ ++    +   ++V     S       +G   AQN    LG +   
Sbjct: 297 VYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAG 356

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             D   A+ ALS   P  G   R  C + +G   L+   Y   P +++ A++ L +I 
Sbjct: 357 GYDFQAALNALSHIRPATG---RMDCIIGEG-KPLVVVDYAHTPDALEKALATLREIK 410


>gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
 gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
          Length = 482

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 167/392 (42%), Gaps = 43/392 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +    +  + G++IDSR +   + F A++G   DGH +I  A+QKGA 
Sbjct: 3   LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62

Query: 67  LVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
            ++   +  + VA I  +      V D   A+ K+A        S+  ++ +TG+ GKTT
Sbjct: 63  AILCEDIPEEPVAGITYIQ-----VKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-DFG---IFE 166
              +L             I +  N+I             P+TL R+   + D G   +F 
Sbjct: 118 IATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFM 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH    + ++ L +    + T +   HL     +E    AK + F+ + K      N
Sbjct: 178 EVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ R      E  +  + L   + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGR----VIESHFEGMLLDFNNHELAVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D ++
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSP--KGVTAIVDYAH 346

Query: 347 NANPASMKAAISVLSQISP--HGEGRRIAVLG 376
             +     A ++VL+ I     G+G+ I V+G
Sbjct: 347 TPD-----ALVNVLNAIHGVLEGKGKVITVVG 373


>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 485

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 147/371 (39%), Gaps = 41/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + F A+KG   DGH +I  AV+KGA  V V  +    + +  +   
Sbjct: 25  ITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEKGA--VAVVCEAWPEVQAEGVTYV 82

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ +LA        SK  +I +TG+ GKTT   +L               +  
Sbjct: 83  QVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVC 142

Query: 145 NHIG-----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI------- 186
           N+I             P+TL R+      G           +   +H V  H        
Sbjct: 143 NYIDDEAVPTEHTTPDPITLNRL-----LGRMADEGCKYAFMEVSSHAVAQHRIAGLKFA 197

Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             + T +   HL      E    AK   F+GL K      N DD    ++   + A+ +K
Sbjct: 198 GGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNVDDRNGMIMVQNTKAV-VK 256

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T YS   +  ADF+ +  ++  E   ++V   GK + V    IG     N+L        
Sbjct: 257 T-YSLRAA--ADFKAKVLEESFEGMCLDV--NGKEVSVPF--IGRFNVSNLLAVYAAAVC 309

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +  + ALS   P  GR +  R    +G   ++D  Y   P ++   +S +++I  
Sbjct: 310 MGRGAEDVLVALSTLRPVNGRFETIRS--KEGVTAIVD--YAHTPDALVNVLSTVNEILK 365

Query: 366 HGEGRRIAVLG 376
              G  I V G
Sbjct: 366 R-RGEVITVCG 375


>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 167/392 (42%), Gaps = 43/392 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +    +  + G++IDSR +   + F A++G   DGH +I  A+QKGA 
Sbjct: 3   LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62

Query: 67  LVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
            ++   +  + VA I  +      V D   A+ K+A        S+  ++ +TG+ GKTT
Sbjct: 63  AILCEDIPEEPVAGITYIQ-----VKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-DFG---IFE 166
              +L             I +  N+I             P+TL R+   + D G   +F 
Sbjct: 118 IATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFM 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH    + ++ L +    + T +   HL     +E    AK + F+ + K      N
Sbjct: 178 EVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ R      E  +  + L   + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGR----VIESHFEGMLLDFNNHELAVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D ++
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSP--KGVTAIVDYAH 346

Query: 347 NANPASMKAAISVLSQISP--HGEGRRIAVLG 376
             +     A ++VL+ I     G+G+ I V+G
Sbjct: 347 TPD-----ALVNVLNAIHGVLEGKGKVITVVG 373


>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
 gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 160/395 (40%), Gaps = 49/395 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            + LL+AIQ   +       + GI+IDSR +   + F A++G   DGH +I  A++KGA 
Sbjct: 3   LNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKGA- 61

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
           + V+  DM         PV G     V D   A  K+A        SK  ++ +TG+ GK
Sbjct: 62  VAVLCEDMPEE------PVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163
           TT   +L             I +  N+I             P+TL R+          + 
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGCKYA 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    + + R     ++    + T +   HL     +E    AK + F+ + K    
Sbjct: 176 FMEVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFS 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD    ++   + +     +Y++     ++F+ R      E  +  + L   + E+
Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLSNFKGRVL----ESHFEGMLLDFNNHEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D
Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSP--KGVTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
            ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
 gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
          Length = 479

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 170/387 (43%), Gaps = 53/387 (13%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS- 80
           +P   V G+S+DSRS+   +AFFA+ G    G  +   AV++GA L+VV     A + + 
Sbjct: 1   MPDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGA-LIVVYDSSGAGVRAP 59

Query: 81  -----LSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALS 131
                 ++PV  +   LG     ++AAR     +    +IA+TG+ GKT+    +  AL 
Sbjct: 60  EPGLGFAVPVRDLGRHLG-----SIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQ 114

Query: 132 SIKKTYACIGSYNNHIGVPLTLARM----PVDVD------------FGIFELGMSHLGEI 175
               T A IG+     G+P  L R+    P  ++            F +  L  S  G+ 
Sbjct: 115 PDHPT-AVIGTLG--WGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQA 171

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE 233
           +   + V    A+ T I   HL+     E   +AK  +     LE    + +  DD   +
Sbjct: 172 QGRINGVHCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALE---FVAVTLDDPSVD 228

Query: 234 LLKAKSHALGIKTI-YSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +  +S   G+K I YS G  ++ DF   ++   +Q  E   ++V   G+++E+     G
Sbjct: 229 AI-LRSVPAGVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYG 287

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A+N+L TL ++  L    + A   +    P  GR +R+R     G   ++D  Y   
Sbjct: 288 DFNAENLLGTLAVLVGLGYPAEAAASRVGRVRPVPGRMERFR---ENGLTVIVD--YAHT 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P +++   +VL+ +  H   R   V G
Sbjct: 343 PDALR---NVLTSLRRHCRERLWVVFG 366


>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
 gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI +DSR +     F A+KG   DGH +I  A++KGA  +V  T  +    +  +   
Sbjct: 23  IAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKGASAIVCET--LPDTLNEHVTYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ KLA        SK  ++ +TG+ GKTT   +L             + +  
Sbjct: 81  RVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVC 140

Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N+I             P+TL R+          +   E     +    +G ++F      
Sbjct: 141 NYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG---- 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239
               + T I   HL      E    AK   F+ L KT     N DD       +  KAK 
Sbjct: 197 ---GIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKTAFALTNADDKNGSVMVQNTKAKI 253

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               ++T+         +F+ +  +   E   M++     + EV    IG   A N+L  
Sbjct: 254 ATYSLRTL--------CEFKGKVLEDGFEGMLMDIN----NREVNVQFIGRFNASNLLAV 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G   +L    +  +  LS   P  GR    R    +G+  ++D ++  +     A ++V
Sbjct: 302 YGAACLLGKQPEDVLLILSTLRPVAGRFDALRS--KKGYTAIVDYAHTPD-----ALVNV 354

Query: 360 LSQISP--HGEGRRIAVLG 376
           L+ I     G GR I V+G
Sbjct: 355 LNAIHEVLKGRGRVITVVG 373


>gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
 gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
          Length = 494

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 24/302 (7%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A NKL     L+    IIAITGS GKT+ K  +   L      YA   S N + G+   +
Sbjct: 154 AHNKLQQLQNLK----IIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVADI 209

Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            + +    +  I E G   +G+I+ +  L++ H AVI  I  AH+  F  IE     K E
Sbjct: 210 NQNINATHEIYIAEAGARQVGDIKEIAELLQHHYAVIGKIGHAHIEYFKNIETTTKTKFE 269

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +      T   F+  D+S+  +L  +  A  +K I ++        +L+  +   E++  
Sbjct: 270 LLYSTRLTHA-FVQKDNSYANVLPPQFEA-NMKKIVAYPP------KLKDIESTLEKTSF 321

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            ++L    +      +G     N+ + + I   L  D++   KA++   P   R +R   
Sbjct: 322 SLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAVAKLTPIPHRLQRIDT 381

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A       +ID+S+N N   M  AI + S       GR+I V   + E  E S   +I+L
Sbjct: 382 AQK----VIIDDSFNGNLEGMSEAIRLASL----HNGRKIIVTPGLVEHDEAS---NIEL 430

Query: 393 AE 394
           A+
Sbjct: 431 AQ 432


>gi|150020386|ref|YP_001305740.1| Mur ligase middle domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149792907|gb|ABR30355.1| Mur ligase, middle domain protein [Thermosipho melanesiensis BI429]
          Length = 511

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 20/300 (6%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    ++AITGS GKT+TK  L   +S   KT    GSYN  +G+   + R  +D    +
Sbjct: 165 RLNPEVVAITGSYGKTSTKFYLYHLISEYYKTLMTPGSYNTTMGIT-KVIREKLDKSHDV 223

Query: 165 FELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           F + ++      F  L  LV P I+VIT+I   H   F     I     +  +       
Sbjct: 224 FIVELAENDNYGFEKLLDLVNPTISVITSIGIQHFEEFENESNILDNFKKYIKDSRSGKK 283

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQL-QGKS 280
             +N+DD      +     +  K I S G ++K A +++   K   + S   ++    + 
Sbjct: 284 FVVNFDD------ENIRKIIKNKDIISCGIENKEAQYRIVDLKLDKDGSNFVLETPNNQK 337

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFF 339
            E   +  G     ++L+ +     L   V+  I +A ++  PK          +     
Sbjct: 338 FEFTTNVYGKENVLDLLLAIVTAFELKVPVEEIIERAKNIVKPKHRLE-----VIRDDTI 392

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID+++N+NP   K A+  LS     G+ R+I +     E+GE     H  L +++S Y
Sbjct: 393 TVIDDTFNSNPKGFKMALEYLSLF---GKRRKILITPGFVELGEKEDEEHYKLGKLISKY 449


>gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
 gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
          Length = 500

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 156/365 (42%), Gaps = 34/365 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G +ID R +AP   F A +G +++  DFI  A++ GA  +V  ++     G+L I   
Sbjct: 22  VTGFAIDHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAKVE-GALHI--- 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
             ++      +LA      +  TI+A+TG+ GKT+T EM         +  A IG+    
Sbjct: 78  ASEEPRRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWRMCGERAASIGTLGVT 137

Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
             +  +   LT    P  V F     G+   G++H+       G  ++    +R      
Sbjct: 138 TPDGSVSTGLT---TPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLRVKAGAF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTI 247
           T  +  HL     ++    AK  +F E +E+ G  I  +  +      +A  HAL  K +
Sbjct: 195 TNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRAIEHALSRK-L 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     +  DF     ++ ++    ++V+  G+S +V    IG + A N L++ G+    
Sbjct: 254 HVLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANALVSAGLAIAT 313

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A       A+    P  GR +R  C    G    ID  Y   P +++AAI+ L    PH
Sbjct: 314 GAAPAQVFDAIGRLQPVRGRLERA-CLTASGAPVYID--YAHTPDALEAAIAAL---RPH 367

Query: 367 GEGRR 371
            +G +
Sbjct: 368 VDGEK 372


>gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
 gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
          Length = 508

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 170/407 (41%), Gaps = 60/407 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83
           ++G++  S+ + P+  FFA+ G  +DGHDFI  A+QKG+ ++V + DM     ++  + +
Sbjct: 28  ISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRDMDFYSPNVTYIKV 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL------------- 130
             F +   +   + +      + K  +I +TG+ GK++    + + L             
Sbjct: 88  DDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTV 146

Query: 131 -------SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLV 182
                  S IK  Y    S      + L L+ M   +V + I E   SH  +++    + 
Sbjct: 147 FFDDGNGSLIKNPYR--QSTPESTEIHLFLSNMVKNNVQYAILE-STSHGLDLKTARLID 203

Query: 183 RPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSH 240
             + AV+ T I   HL     I+   +AK  +F  + +  G   +N+DD ++   K   +
Sbjct: 204 VNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYSDFK---N 260

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------- 292
           A+     YS  KS  ADF +         S+++ ++     E  H G+ Y          
Sbjct: 261 AVKKSFTYSL-KSSKADFFV---------SFIDEKIDSTRFEFYHKGVKYFANVSLLGSF 310

Query: 293 -AQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             +N++  L +VS IL +D+   +  L      +GR       L Q F  +ID  Y   P
Sbjct: 311 NVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMD--SVNLGQNFSVIID--YAHTP 366

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +      +  + + +   R I+V G   E     +     +A++ S
Sbjct: 367 GAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQIADIYS 410


>gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
 gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
          Length = 484

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 157/388 (40%), Gaps = 45/388 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN +   H+L Q  Q H+        V G+SI+S+++  ++ FF IKG + DG+DFI  A
Sbjct: 1   MNIINMSHNLKQLFQQHN--------VKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDA 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA LV+ +      I      V  V DV  AL +       ++   +IA+TG+ GK+
Sbjct: 53  LSKGAVLVITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKS 108

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----V 160
           +    +    S + K  A IG+    I         VP       L+  ++  +     +
Sbjct: 109 SVVSYIAQTYSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGI 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           ++ +FE     L + R     ++ +IA  T+ +  HL      E    AK ++F   L  
Sbjct: 169 EYLVFEASSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLP 226

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN D    E +K   H   IK I + GK    D ++ +     +   +      +
Sbjct: 227 NGIAILNSDIEEIEFVKDYLHNHNIKFI-TVGKK--GDLEITRINGSLKGQNINFTFNNR 283

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG   A N+L+ +  +       D  I +L      +GR +R     N   F
Sbjct: 284 EYNFNTPIIGSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERID---NTHIF 340

Query: 340 TLIDESYNANPASMKAAISVLSQISPHG 367
                 Y   P ++  A++ L  I   G
Sbjct: 341 V----DYAHTPDALAKALTELKNIKLRG 364


>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 483

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 161/385 (41%), Gaps = 36/385 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+ ++    G  P   ++G+  DSR    +  F AIKG   DG  ++  A++ GA  V
Sbjct: 5   DILKGVKCEIKGD-PNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V + ++    G   I    V+D    + K+A        SK T+I +TG+ GKT+   ML
Sbjct: 64  VADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L         +G+  N IG  V  ++   P  +D       M + G ++++   V  
Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H             IA+ T ++  HL     +EE A  K+++F+  ++   I  N DD +
Sbjct: 180 HSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVI--NIDDKY 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++   S A     + ++G    A    +  +   +    +VQ++ K  E+     G  
Sbjct: 238 SSMMIESSKA----KVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   + +  +ALS    K   G+       + F+  ID  Y   P 
Sbjct: 294 NVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
            ++   +++  +  +  GR+I + G
Sbjct: 349 GIQ---NIMEALKEYKTGRKILLFG 370


>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
 gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
          Length = 494

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 163/388 (42%), Gaps = 70/388 (18%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++      +++PV 
Sbjct: 24  ITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREV-----DVNVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V   L AL+ L+ A   +   K  +I ITG+ GKT+T  M+   L    K    IG+  
Sbjct: 79  IVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKRTGLIGTMY 138

Query: 145 NHIG---VPL------------TLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG   +P+            T  +M    VD  I E+  SH   LG +    H     
Sbjct: 139 MKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVS-SHALSLGRV----HGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236
           IAV T +   HL     ++E   AK+ +F  L      E      LN DD   ++FE + 
Sbjct: 194 IAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFEKVT 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +H      I ++G   +AD   +          + +  QG S ++V +    H+  ++
Sbjct: 254 A-AH------ISTYGIKNDADVMAKN---------ISITAQGTSFDLVTNKGTKHITMSL 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFH-----PKEGRGKRYRCAL---NQGFFTLIDESYNA 348
           +    + ++L A V T I A   F       +E  G R R  L    Q F  ++D  Y  
Sbjct: 298 VGQFNVYNVLAA-VATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVD--YAH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P S++   +VL       EG+   V+G
Sbjct: 355 TPDSLE---NVLETCRDMTEGKLFVVVG 379


>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
 gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
          Length = 487

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 164/403 (40%), Gaps = 48/403 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I +DSR +     FF IKG   DGHDF   AV+KGA  ++   +    +  + +P   V 
Sbjct: 27  IEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEKGAVALIAERE----VKGVEVPTIIVQ 82

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D    + +LA        SK  +I +TG+ GKTT   +L   ++   K    IG+    I
Sbjct: 83  DTKRTMARLANLFYGDPTSKMNLIGVTGTNGKTTVTHLLEQIMNDANKRTGLIGTMYTKI 142

Query: 148 G---------VP--LTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVI 189
           G          P  +TL +     +  DV+  + E+     HLG +R         IAV 
Sbjct: 143 GDVELKTQNTTPESITLQKRFKEMVDADVETALMEVSSHALHLGRVRGCDF----DIAVF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDD-SFFELLKAKSHALGI 244
           T + P HL     +E    AK  +F  L    T      LN DD +  ELLK     +  
Sbjct: 199 TNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEGKVAVLNRDDEAADELLK-----MTT 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + ++G    AD      +  +  +   ++   +S+E+    IG     N L       
Sbjct: 254 VDVLTYGVENKADIMAEDIEITARGTTFTLKAGTESIEIEMKLIGMFSVYNALAAASAAI 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++   K+L   H   GR +       Q +  ++D ++ ++        +VL+ + 
Sbjct: 314 ASGIPLEQIKKSLEAVHGVAGRFEPVDAG--QDYTVIVDYAHTSDSLE-----NVLTTVR 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              +G+   V+G  C  G+  ++    +AE+ + Y  + ++ S
Sbjct: 367 EFAKGKISVVVG--C-GGDRDRTKRPVMAEIATKYADNAIFTS 406


>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter sp. X514]
 gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X514]
 gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 483

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 161/385 (41%), Gaps = 36/385 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+ ++    G  P   ++G+  DSR    +  F AIKG   DG  ++  A++ GA  V
Sbjct: 5   DILKGVKCEIKG-DPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V + ++    G   I    V+D    + K+A        SK T+I +TG+ GKT+   ML
Sbjct: 64  VADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L         +G+  N IG  V  ++   P  +D       M + G ++++   V  
Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H             IA+ T ++  HL     +EE A  K+++F+  ++   I  N DD +
Sbjct: 180 HSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVI--NIDDKY 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++   S A     + ++G    A    +  +   +    +VQ++ K  E+     G  
Sbjct: 238 SSMMIESSKA----KVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   + +  +ALS    K   G+       + F+  ID  Y   P 
Sbjct: 294 NVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
            ++   +++  +  +  GR+I + G
Sbjct: 349 GIQ---NIMEALKEYKTGRKILLFG 370


>gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
 gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
          Length = 486

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 40/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+ G   DG DF   AV KGA  ++     +  +G   +PV 
Sbjct: 19  IAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEGGLEGLG---VPVV 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             +D   A    + A   +  A  +A+TG+ GKT+         + +    A +G+    
Sbjct: 76  RSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMGT---- 131

Query: 147 IGVPLTLARMP---------VDVDFG--------IFELGMSHL-------GEIRFLTHLV 182
           +GV ++ A  P            D G        + ++G++HL       G  +     V
Sbjct: 132 LGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDGV 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHA 241
           +   A  T     HL     +E   +AK  +F+ L   G T  LN D   F    + +  
Sbjct: 192 KLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAVT 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G ++++S G+       + +    + Q  + V+ QG++ ++     G   A N+L+  G
Sbjct: 252 SG-QSVFSVGEDGQGLRLISRTPTPAGQDLV-VEAQGRTYDIRLPLAGAFQASNVLVAAG 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      DV   +KAL       GR +R     + G    +D  Y   P  ++   +VL 
Sbjct: 310 LCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGG-EAYVD--YAHTPDGLQ---TVLE 363

Query: 362 QISPHGEGRRIAVLG 376
            + PH  G+ IAV G
Sbjct: 364 ALRPHTRGKLIAVFG 378


>gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 498

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 159/374 (42%), Gaps = 48/374 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR +  +  F  IKG ++D H  I   +Q+  G V +  +M      + +P+  V 
Sbjct: 30  IESDSRGLKERNLFICIKGTNFDSH-LIARELQR-KGAVALVAEMPIEDEEVVVPIVYVK 87

Query: 90  D--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              ++ AL  +        K T I +TG+ GKTT   ++   LSS ++  + IG+  N +
Sbjct: 88  SSRLVEALLTMEEYCHPYRKLTTIGVTGTNGKTTITTLIYHVLSSFERKASLIGTVRNVV 147

Query: 148 GV------------PLTLARM-----PVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185
           G             P+ LA++      +  ++ I E     L M+ +  +RF        
Sbjct: 148 GENIYTNPKNTTPGPVELAKLLQLSTKLKSEYFIMEVSSHSLSMNRVEGMRF-------D 200

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +I+ +   HL      ++   +K ++F  L+  G   +N D      +    + +   
Sbjct: 201 VGIISNVTRDHLDFHPTFDDYYRSKMKLFSLLKTNGIAVVNGDKINIADIHISRNRI--- 257

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGI 302
           T Y FG    +D+++        ++ M+  +Q   G S  +    IG H A N+   +  
Sbjct: 258 TTYGFGDE--SDYRIENLDIS--RTGMDFTIQTPYGSSHRIYSRLIGEHNAYNIAAAVAA 313

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           ++ L  D+D   KA+S F    GR +    A   GF  ++D  +   P +++  +    +
Sbjct: 314 LNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDVVVD--FAHTPDALEKLLKTARR 371

Query: 363 ISPHGEGRRIAVLG 376
           ++P   GR I V G
Sbjct: 372 LTP---GRLILVFG 382


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 167/399 (41%), Gaps = 52/399 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPV 85
           V GI+ +S+ +    AFFAIKG   DGH+FI  A++ GA ++ +  +  + S+   +I V
Sbjct: 22  VEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYIESLKGKNITV 81

Query: 86  FGVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
              D+       LA+A+         K  +IAITG+ GKTTT  +L             I
Sbjct: 82  VLTDN---GRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAGYKVGVI 138

Query: 141 GSYNNHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  +G  +               TL  M     D  + E+  SH  + ++  +  + 
Sbjct: 139 GTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVS-SHAAD-QYRVYSTKF 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFE--LLKAKS 239
           H  + T +   HL     +E    AK  +FE ++   K     +N DD      L   K+
Sbjct: 197 HGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIYSINVDDEHGRRILDYLKN 256

Query: 240 H-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           H  +    I ++GK+ + DF++  ++    ++    + +    ++     G     N+  
Sbjct: 257 HLKVNDDKIITYGKT-SEDFKILDYRLSLFETEFSYKYKDTLSKIKTKLRGVFNIYNLSA 315

Query: 299 TLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           T   VS L  D  D         H K  +G R+     QGF  +ID  Y   P +++  +
Sbjct: 316 T---VSFLIKDGFDLKFLEEKALHLKPIKG-RFEVIEGQGFIVVID--YAHTPDALENIL 369

Query: 358 SVLSQISPHGEGRRIAVLG-----DMCE---MGELSQSF 388
             L++I    E R I V G     D  +   MGE ++S 
Sbjct: 370 KSLNEIK---ENRIITVFGAGGNRDKTKRPLMGETAESL 405


>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
          Length = 485

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 149/370 (40%), Gaps = 39/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     F A+ G   DGH +I  AV+KGA  ++   ++ A +    +   
Sbjct: 23  ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCE-ELPAELAE-GVTYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ K A        SK  ++ +TG+ GKTT   +L             I +  
Sbjct: 81  QVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140

Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I             P+TL R+          +   E+    + + R     +R    +
Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LRFAGGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AK + F+ + K      N DD    ++   + +     +Y
Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KVY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     +DF+ R      E  +  + L   + E+    IG   A N+L   G   +L  
Sbjct: 255 TYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLGK 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366
             +  + ALS  HP  GR    R    QG+  ++D ++  +     A ++VL+ I     
Sbjct: 311 KEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363

Query: 367 GEGRRIAVLG 376
           G+G+ I V+G
Sbjct: 364 GKGKVITVVG 373


>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 483

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 162/390 (41%), Gaps = 43/390 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +LL+AIQ   I    +  + G++IDSR +     F A++G   DGH +I  A++KGA  V
Sbjct: 5   ELLKAIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKGA--V 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            V  + V       I    V D   A+ K+A        SK  ++ +TG+ GKTT   +L
Sbjct: 63  AVLCEDVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG---VP------------LTLARMPVDVDFG---IFELG 168
                        I +  N+I    +P            L L +M    D G   +F   
Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQM---ADSGCKYVFMEV 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + + ++ L R    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 180 SSHSIDQKRISGL-RFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+     +  E  +  + L   + E+  H I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFK----GKILESHFEGMLLDFNNHELAVHFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R    +G   ++D ++  
Sbjct: 291 GRFNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVRSP--KGITAIVDYAHTP 348

Query: 349 NPASMKAAISVLSQISP--HGEGRRIAVLG 376
           +     A I+VL+ I     G+G+ I V+G
Sbjct: 349 D-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 463

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 147/336 (43%), Gaps = 45/336 (13%)

Query: 43  FFAIKGPHYDGHDFILH--AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           ++  +  H +G D ++H  AV++       N ++ A+  +L+IPV    ++L        
Sbjct: 53  YYGHRPEHVEGADIVVHSTAVKQD------NVELQAA-RALNIPVIHRSEML-------- 97

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPV 158
            ARL      IA+TG+ GKTTT  M+  A+  + +  T+  +G     +G      + P 
Sbjct: 98  -ARLMDDRVGIAVTGAHGKTTTTSMIAFAMEQNGLDPTF-IVGGVVADLGDNAKAGKGP- 154

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217
                 F +  +   +  FL +  RP IAV+T + P HL ++ G  E +  A       +
Sbjct: 155 ------FVVAEADESDGSFLHY--RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFIRQI 206

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + ++ DD     L++ +       + ++G +++AD   R  +     S  +V + 
Sbjct: 207 PSEGLLVMSADDDKLRELRSAARC----RVVTYGFAEDADITARHVELGDRASRSDVLVN 262

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK +  +   + G H   N L  + +   +    + A  ALS FH   G  +R++     
Sbjct: 263 GKFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFH---GAKRRFQVVAEV 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           G   ++D+ Y  +P  ++A I+          GRRI
Sbjct: 320 GDVLIVDD-YAHHPTEIRATIAAAKST-----GRRI 349


>gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
 gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
          Length = 508

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 173/409 (42%), Gaps = 65/409 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ I+G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKHIKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +V + DM     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  IVCSRDMDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 125 MLTIALSS--------------------IKKTYACIGSYNNHIGVPLTLARMPVD-VDFG 163
            + + L                      IK  Y    S      + L L+ M  + V + 
Sbjct: 128 YIYLLLKKKGIKVGFISTVFLDDGDGNLIKNPYR--QSTPESTEIHLFLSNMVKNKVQYA 185

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221
           I E   SH  ++     +   + AV+ T I   HL     I+   +AK  +F  + +  G
Sbjct: 186 ILE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAG 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N+DD ++   K   +A+     YS  KS  ADF +         S+++ ++     
Sbjct: 245 FGVINFDDPYYSDFK---NAVKKSFTYSL-KSNKADFFV---------SFIDEKIDSTRF 291

Query: 282 EVVHHGIGYHM---------AQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
           E  H G+ Y            +N++  L +VS IL +D+   +  L      +GR     
Sbjct: 292 EFYHKGVKYSANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMD--S 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 350 VNLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
 gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
          Length = 508

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 179/426 (42%), Gaps = 65/426 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ I+G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKHIKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +V + DM     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  IVCSRDMDFYSPNVTYIKVDNFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 125 MLTIALSS--------------------IKKTYACIGSYNNHIGVPLTLARMPVD-VDFG 163
            + + L                      IK  Y    S      + L L+ M  + V + 
Sbjct: 128 YIYLLLKKKGIKVGFISTVFLDDGNGNLIKNPYR--QSTPESTEIHLFLSNMVKNKVQYA 185

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221
           I E   SH  ++     +   + AV+ T I   HL     I+   +AK  +F  + +  G
Sbjct: 186 ILE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAG 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N+DD ++   K   +A+     YS  KS  ADF +         S+++ ++     
Sbjct: 245 FGVINFDDPYYADFK---NAVKKSFTYSL-KSNKADFFV---------SFIDEKIDSTRF 291

Query: 282 EVVHHGIGYHM---------AQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
           E  H G+ Y            +N++  L +VS IL +D+   +  L      +GR     
Sbjct: 292 EFYHKGVKYSANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMD--S 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L Q F  +ID  Y   P +      +  + + +   R I+V G   E     +     
Sbjct: 350 VNLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQ 404

Query: 392 LAEVLS 397
           +A++ S
Sbjct: 405 IADIYS 410


>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
 gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
          Length = 462

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 39/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR I     F A++G   DGH +I  A+ KGA  V V  + +       I   
Sbjct: 3   ITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGA--VAVLCEELPEELKAGITYI 60

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ K+A        SK  +I +TG+ GKTT   +L             + +  
Sbjct: 61  QVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVC 120

Query: 145 NHIG-----------VPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I             P+TL R+  ++      +   E+    + + R     ++    +
Sbjct: 121 NYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISG--LKFAGGI 178

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AK + F+ L K      N DD    ++   + +     +Y
Sbjct: 179 FTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDKNGLVMTQNTRS----KVY 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     +DF+     +  E  +  + L   + E+    IG   A N+L   G   +L  
Sbjct: 235 TYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGKFNAYNLLAVFGTAVLLGK 290

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366
             +  + ALS  HP  GR    R    +G+  ++D ++  +     A ++VL+ I     
Sbjct: 291 KEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 343

Query: 367 GEGRRIAVLG 376
           G+G+ I V+G
Sbjct: 344 GKGKVITVVG 353


>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
 gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 162/387 (41%), Gaps = 37/387 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +LL+AIQ   I    +  + G++IDSR +     F A++G   DGH +I  A++KGA  V
Sbjct: 5   ELLKAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKGA--V 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            V  + V       I    V D   A+ K+A        SK  ++ +TG+ GKTT   +L
Sbjct: 63  AVLCEDVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-DFG---IFELGMSH 171
                        I +  N+I             P+TL ++   + D G   +F    SH
Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEVSSH 182

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               + ++ L R    + T +   HL     +E    AK + F+ + K      N DD  
Sbjct: 183 SIAQKRISGL-RFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKGAFSLTNLDDKN 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++   + +     +Y++     +DF+     +  E  +  + L   + E+  H IG  
Sbjct: 242 GLVMTQNTRS----KVYTYSLRSLSDFK----GKILESHFEGMLLDFNNHELAVHFIGRF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N+L   G   +L    +  + ALS   P  GR    R    +G   ++D ++  +  
Sbjct: 294 NASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSP--KGITAIVDYAHTPD-- 349

Query: 352 SMKAAISVLSQISP--HGEGRRIAVLG 376
              A I+VL+ I     G+G+ I V+G
Sbjct: 350 ---ALINVLNAIHGVLEGKGKIITVVG 373


>gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 488

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 39/303 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI  DSR+      F AIKG  +DG D+I  AV++GA  +VV  ++  SI    I V 
Sbjct: 23  VKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERGAVAIVVEREV--SIDK-DITVI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V++   +L K+A         +  +I +TG+ GKT+   M+   L S       IG+ +
Sbjct: 80  KVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSVTYMIKSILESQNNKVGLIGTIH 139

Query: 145 NHIG---------VPLTLA-----RMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N IG          P +L      R+ VD  V + + E     L ++ + E +F      
Sbjct: 140 NMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVDECKF------ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IAV T +   HL     ++E A+AKA++F  + KT  + +N DD +   +   S+A  
Sbjct: 194 -DIAVFTNLTQDHLDFHKTMDEYANAKAKLFR-MAKTACV-INIDDDYSSYMIENSNA-- 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G    A    +  K   + +   VQ++    E+     G     N L  + + 
Sbjct: 249 --KVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALKIPGLFSVYNSLAAISVA 306

Query: 304 SIL 306
            IL
Sbjct: 307 FIL 309


>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
 gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
          Length = 485

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 23/316 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  IS DSR +     F  I+G   DGH++I  A+QKGA  ++++  +    G   I V 
Sbjct: 23  IEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAILIDKKISYKKGITYIRVN 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT----KEML----------TIALSS 132
            V + +  + K       + K  +I +TG+ GKT+T    K++L          TI +  
Sbjct: 83  NVKESMAIIGKNFFQNPCQ-KINLIGVTGTNGKTSTVSFIKQILGYDCKVGSIGTIEIYD 141

Query: 133 IKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            KKT   I +    + +   L  M   +  + + E+  SH   +  + + +    AV T 
Sbjct: 142 GKKTITSINTTPESLDIQKNLNEMIKNNCKYCVMEVS-SHALVLNRIDN-IDYEAAVFTN 199

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSF 250
           +   HL     +E   +AK ++F    KT +I   N DD   E    KS    IKT Y++
Sbjct: 200 LTQDHLDFHKTLENYKNAKEKLF---YKTKSINIFNIDDKVGEEFFNKSLNRDIKT-YTY 255

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  K ADF+    K   +++  ++ +  +  +V    +G     N L  +    +L    
Sbjct: 256 GVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVYNTLAAITTCILLGLSR 315

Query: 311 DTAIKALSVFHPKEGR 326
           +  IK +       GR
Sbjct: 316 EDVIKRVQNLKSVSGR 331


>gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 491

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 33/373 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V+GI+ DSR + P+  F AI G   DG  FI  A+Q+GA  ++   D  A++      I 
Sbjct: 23  VSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAIISTPDACAAVRQAGHDIA 82

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
               DD   AL+ +A A        ++A+TG+ GKT+T E +           A IG+  
Sbjct: 83  CIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAAASIGTLG 142

Query: 145 -----------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                            + + + LTL  +    VD    E     L + R     V    
Sbjct: 143 IISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRL--DGVPLAA 200

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALG 243
           A  + +   HL     ++   +AK  +F+ L   G + +   D   +  E L+A +   G
Sbjct: 201 AGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALRAIAVKRG 260

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +   G+S +A   LR   +   Q  ++V+  G   EV     G +   NML+  G+ 
Sbjct: 261 LD-LRLVGESGDAIRLLRVTPRPDGQ-VLDVECNGTRHEVATRLPGRYQVDNMLLAAGLA 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +     +  AI  L       GR   +   L  G    +D  Y   P +++    +L  +
Sbjct: 319 ASSRDMMSAAINCLPALVGVRGR-MEHAVTLPNGAAVYVD--YAHTPDALE---RLLLSL 372

Query: 364 SPHGEGRRIAVLG 376
            PH  GR +AV G
Sbjct: 373 RPHASGRLVAVFG 385


>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 493

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 162/391 (41%), Gaps = 60/391 (15%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           IG++P   V  I +DSRS+ P   F  IKG   DGHD+   AV  GA +VV   ++    
Sbjct: 21  IGMLPDQ-VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 79

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               + V   D  +G L     AA+         T+I +TG+ GKT+   ++   +  + 
Sbjct: 80  TIAQVIVKDTDRAVGLL-----AAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMG 134

Query: 135 KTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------- 185
           +  A  G+   N  G+    A    D       +  + +   R +T  V  H        
Sbjct: 135 EKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALGRLA 194

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLK 236
                IA+ T +   HL     +EE   AK  +F    + LEK   + LN DD++ E   
Sbjct: 195 GVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE--- 251

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294
            +  A+    ++++G K++ ADF   +   C    +M       S +V +  GI Y +  
Sbjct: 252 -RYAAMTPFPVWTYGLKNETADF---RAINCEYHDYM------TSFDVEMSEGI-YRVKM 300

Query: 295 NMLMTLGIVSILTADV---------DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           N+L    I ++L A V         +  I+ +    P +GR ++    L    F      
Sbjct: 301 NLLGEFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSDLPVQMFV----D 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P +++ AI       P+ +G+ I ++G
Sbjct: 357 YAHTPDAIEKAIEA---AQPYKKGKLIFLVG 384


>gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
 gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
          Length = 481

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 150/367 (40%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GI  DSR +  +  F A +G   DGH +I  A++ GA + +V  ++ + I   +I   
Sbjct: 23  VSGIQFDSRKVEAENVFVATRGTASDGHQYIATAIENGA-VAIVCEELPSEINP-NITYV 80

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIG 141
            V+D   AL K+A A      +K T++ +TG+ GKTT   +L      +       + + 
Sbjct: 81  KVEDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTIATLLYQLFRELGHKSGLLSTVC 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189
           +Y N + V  T    P  +        M   G E  F+   +H +  H         A+ 
Sbjct: 141 NYVNDLAVEATHT-TPDALALNALLAQMVDAGCEYAFMEVSSHSIDQHRISGLEFDGAIF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   H+      E    AK + F+ L        N DD    ++   S A      Y+
Sbjct: 200 TNITRDHIDYHLTFENYLKAKKQFFDNLSTDAFALTNADDKNGLVMLQNSKA----KKYT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +     ADF+ R  +   E   M + +  K + V    IG   A N+    G   +L  D
Sbjct: 256 YSLRGMADFKTRILEHGFE--GMLLDMNDKEVNVSF--IGKFNASNLSAVFGAAVLLGQD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
               ++ +S  H   GR +        G+  ++D  Y   P ++   I  ++QI   G G
Sbjct: 312 ELEVLRIISSLHSVSGRFETLHSP--AGYTAIVD--YAHTPDALVNVIGTINQI-LQGNG 366

Query: 370 RRIAVLG 376
           R I V+G
Sbjct: 367 RLITVVG 373


>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
 gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
          Length = 490

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 48/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++      +S+PV 
Sbjct: 24  ITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAEREL-----DVSVPVT 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V +   AL+ L+ A   +   +  +I ITG+ GKT+T  M+   L    K    IG+  
Sbjct: 79  IVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGKRTGLIGTMY 138

Query: 144 --------------NNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                            + +  T  +M  + VD  I E+    L   R   H     IAV
Sbjct: 139 IKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRV--HGCDYDIAV 196

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKAKS 239
            T +   HL     ++E   AK+ +F  L      EK     LN DD   +++E + A +
Sbjct: 197 FTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAYYEKVTA-A 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           H      I ++G   +AD   +  K  ++ +  E+     +  +    +G     N+L  
Sbjct: 256 H------ISTYGIKNDADVMAKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNVLAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +          +T  +A+   H   GR +      NQ F  ++D  Y   P S++   +V
Sbjct: 310 VATCIAAGIPFETVAEAVEELHGVRGRFELVN--KNQEFPVIVD--YAHTPDSLE---NV 362

Query: 360 LSQISPHGEGRRIAVLG 376
           L       EG+   V+G
Sbjct: 363 LKTCKDMTEGKVFVVVG 379


>gi|224437375|ref|ZP_03658347.1| hypothetical protein HcinC1_05382 [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 55/322 (17%)

Query: 95  LNKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           LN+  V A+    + S+  II +TGS GKT+ K  LT  L    + YA   S N H G+ 
Sbjct: 148 LNRYIVLAKEKLDIMSRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGI- 206

Query: 151 LTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +A +  ++D+     I E G    G+I  ++  + PH AVI  +   HL  F  +E I
Sbjct: 207 --VADINNNLDYTTEIYITEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENI 264

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWK 264
              K E+ +  ++    F+  D+     LK ++  +AL  K  Y     +N         
Sbjct: 265 VETKFELLQS-KRLKKAFVFKDN-----LKPQNLDNALAKKITYFPENVRN--------- 309

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDTAIK 315
                  +E  L+G S ++      +     +L    +V++  A          V+   K
Sbjct: 310 -------VEANLEGTSFDLFIKNEWHRFDTMVLGQFNVVNLSAAIYMGVELGLRVEEIQK 362

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+    P   R  + +   NQ    +ID+ +N N   MK AI    ++S   EGR+I V 
Sbjct: 363 AVKRIEPIPHRLNKIQT--NQKL--IIDDGFNGNLKGMKEAI----RLSSLYEGRKIIVT 414

Query: 376 GDMCEMGELSQSFHIDLAEVLS 397
             + E    ++  +I+LA+ + 
Sbjct: 415 PGIVES---TKEANIELAKAID 433


>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
 gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 135/318 (42%), Gaps = 32/318 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI +DSR +     F AIKG   DGH FI  AV+ GA  VV    +      L++P  
Sbjct: 25  IRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVENGAAAVVGEEAL-----ELNVPYI 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   +L KLA     R   K  II ITG+ GKTTT  +L   L +  +T + +G+ +
Sbjct: 80  KVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKTTTAYILKHILETAGRTCSLLGTVS 139

Query: 145 NHIG---------VP--LTLARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N I           P  L + +M    +D +F + E+    L + R  T  +     + T
Sbjct: 140 NIINNREYKTSNTTPDALQIQKMLSKSLD-EFVVMEISSHALEQSR--TEGLELDYGLFT 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +A  HL     +++    K +IF  L+  G   +N  +S+ E +        I  I   
Sbjct: 197 NLAHDHLDYHENMDQYFLDKKKIFTLLKDGGKGVINLYNSWGEKMAEDLQKEKIPLILL- 255

Query: 251 GKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                 D Q    K  +   ++   ++++G+S E+     G+H   N  M       L  
Sbjct: 256 -----GDDQCCSIKDVAINGRTVFILEMKGQSFEIEFPLPGHHNVYNAAMAFLTGVDLGI 310

Query: 309 DVDTAIKALSVFHPKEGR 326
           D    IKAL+ F    GR
Sbjct: 311 DTADIIKALAGFPGIPGR 328


>gi|313143839|ref|ZP_07806032.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128870|gb|EFR46487.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 490

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 55/322 (17%)

Query: 95  LNKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           LN+  V A+    + S+  II +TGS GKT+ K  LT  L    + YA   S N H G+ 
Sbjct: 146 LNRYIVLAKEKLDIMSRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGI- 204

Query: 151 LTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +A +  ++D+     I E G    G+I  ++  + PH AVI  +   HL  F  +E I
Sbjct: 205 --VADINNNLDYTTEIYITEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENI 262

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWK 264
              K E+ +  ++    F+  D+     LK ++  +AL  K  Y     +N         
Sbjct: 263 VETKFELLQS-KRLKKAFVFKDN-----LKPQNLDNALAKKITYFPENVRN--------- 307

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDTAIK 315
                  +E  L+G S ++      +     +L    +V++  A          V+   K
Sbjct: 308 -------VEANLEGTSFDLFIKNEWHRFDTMVLGQFNVVNLSAAIYMGVELGLRVEEIQK 360

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+    P   R  + +   NQ    +ID+ +N N   MK AI    ++S   EGR+I V 
Sbjct: 361 AVKRIEPIPHRLNKIQT--NQKL--IIDDGFNGNLKGMKEAI----RLSSLYEGRKIIVT 412

Query: 376 GDMCEMGELSQSFHIDLAEVLS 397
             + E    ++  +I+LA+ + 
Sbjct: 413 PGIVES---TKEANIELAKAID 431


>gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 573

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 31/378 (8%)

Query: 19  IGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           +G  PQ  G V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +     
Sbjct: 73  LGAAPQESGDVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVAVLTDPAGAE 132

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134
              +  +PV   +D  G + +LA     R  A +  I ITG+ GKTTT  ++   L    
Sbjct: 133 RAAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAYLVEGGLRGAG 192

Query: 135 KTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------- 185
           ++   IG+    IG     +    P   D       M   G +  +   V  H       
Sbjct: 193 RSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRV 251

Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 +AV   ++P H+   SG+E+   AKA++F    ++    +N+DD +   L  ++
Sbjct: 252 DGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFT-PRRSRLGVVNFDDEYGRRLIDEA 310

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLM 298
            ++ + T  + G   +AD++    +   + S   V   +G+ +       G     N L 
Sbjct: 311 -SVPVVTFSAEGH-PDADWRAADVEVGPQDSRFTVLGPKGERITARAPLPGPFNVANTLA 368

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              IV++  A VD    A  V       G+  R    Q +  ++D ++  +     A  S
Sbjct: 369 A--IVTLAVAGVDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAHKTD-----AVES 421

Query: 359 VLSQISPHGEGRRIAVLG 376
           VL  +    EGR   VLG
Sbjct: 422 VLRSLRKVTEGRVHIVLG 439


>gi|289447785|ref|ZP_06437529.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420743|gb|EFD17944.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
          Length = 301

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 125/310 (40%), Gaps = 52/310 (16%)

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + PAHL  F   E IA  KAE+ + +  +G + LN DD     + AK   L    +   
Sbjct: 3   NVGPAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVRV 58

Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305
            +    D     W       E +     L     +  V  G+ G H   N L    +   
Sbjct: 59  SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 114

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364
             A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+ 
Sbjct: 115 CGASVEQVAAALTAAPPVSR--HRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 172

Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            P    R  AVLG+M E+GE + + H  +  +    ++S + + G           RSI 
Sbjct: 173 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSIS 223

Query: 424 -VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCGF 457
            +H+   ++G +   +++                         L  GDVV+VK+SN+ G 
Sbjct: 224 AMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGL 283

Query: 458 YRLINLLLEE 467
             + + L+ +
Sbjct: 284 GAVADALVAD 293


>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 492

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 137/327 (41%), Gaps = 41/327 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ D+R + P   F  I G  ++GH+    AVQKGA LVV +  +      + +PV 
Sbjct: 25  ITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAVLVVASEPL-----DVEVPVV 79

Query: 87  GVDDVLGALNKLAVA------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V++ + A+  LA A        LR    +I +TG+ GKTT   +L       K+    I
Sbjct: 80  YVNNTMKAMAILAAAFYDYPSQNLR----VIGVTGTNGKTTVTHLLDYIFHDHKEKTGVI 135

Query: 141 GSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------- 185
           G+    IG  +  T    P  +        M   G ++  +  V  H             
Sbjct: 136 GTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENG-VQTCSMEVSSHSLVQGRVWGTDFD 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           IA+ T ++  HL     +E+ A AK+ +F  L      +K     LN+DD      + K+
Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKPKFAILNFDDPVGRSFEEKT 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    +++S+G  ++ADF+    +  ++ +   +  + +  EV    +G     N L  
Sbjct: 255 AA----SVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQVYEVQLQLVGKFNVSNALAA 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326
           +        ++ + I++LS      GR
Sbjct: 311 IAGAYAAGLELPSVIQSLSQISGVRGR 337


>gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
 gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
          Length = 493

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 39/378 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  + G+++DSR + P   F A+ G    G +FI +A+++GAG ++ +    A+   L+ 
Sbjct: 19  QANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAILTD----ATGARLAQ 74

Query: 84  PVFGVDDVL-----GALNKLAVAARL---RSKATIIAITGSVGKTT----TKEML-TIAL 130
               + D            LA AA L       T+IA+TG+ GKT+    T+++   + L
Sbjct: 75  DFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERMGL 134

Query: 131 SSIK-KTYACIGSYNNHIG----VPLTLARM-----PVDVDFGIFELGMSHLGEIRFL-T 179
           +++   T    G+Y+  +G     P+TL RM        V  G  E     L + R    
Sbjct: 135 AAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASSHGLAQRRLDGV 194

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAK 238
           HL+    A  T     HL   +  +E  +AKA +F   L + G   +N DD     + A 
Sbjct: 195 HLM---AAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDPRGAEMAAI 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +   G + + + G++  AD +L   +  +    +  + + +  ++    IG   A+N+L+
Sbjct: 252 ATERG-QDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGFQAENVLL 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    AD +   + L       GR  +     + G    +D  Y   P ++  AI 
Sbjct: 311 AAGLVIGAGADAEQVFEVLPDMRTVRGR-MQLAATRDNGAAVFVD--YAHTPDAVATAIK 367

Query: 359 VLSQISPHGEGRRIAVLG 376
            L    PH  GR IA++G
Sbjct: 368 AL---RPHVMGRLIAIVG 382


>gi|256371401|ref|YP_003109225.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007985|gb|ACU53552.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 526

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSH 171
           ITGS GKTTTK  +   +    +T A   S+NN  G+   +   +  DV+  + E+GM  
Sbjct: 183 ITGSFGKTTTKGYVAALVEGTYRTLATPASFNNRGGLARAINEHLTSDVEVFVAEMGMFG 242

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GEI  L   VRP I+VIT I P HL        I  AK EI   +E    + LN D   
Sbjct: 243 PGEIAELVSWVRPEISVITAIGPVHLERLGSEAAIVRAKLEI---VETARVVVLNVDYPR 299

Query: 232 FELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             L        G + +      S  AD  ++   +       EV +     ++    +  
Sbjct: 300 LALAANALEQEGARRVVRVSAISLEADVAVKPNDEG------EVVVYAHGAKIAKAALAD 353

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDES 345
            +A N+   + +   L    +   + L    P   R       L  G        ++D++
Sbjct: 354 VVAGNLACAVAVALELGVAPEDIAERLGRIKPAPNR-------LVAGVSPTSGVEVLDDT 406

Query: 346 YNANPASMKAAISVL 360
           YNANP   + A+  L
Sbjct: 407 YNANPMGARRALDAL 421


>gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
 gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
          Length = 490

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 154/368 (41%), Gaps = 32/368 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +S DSR +AP+  FFA+ G   DG  F   A +KGA  +V      ASI     PV 
Sbjct: 21  VAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKGAVAIVAEGKSAASI--EGAPVI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
            V DV  AL + A     R   TI+AITG+ GKT+    +    ++     A +G+    
Sbjct: 79  AVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAAFVRQLFAANGFAAASLGTLGVV 138

Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
             N  +   LT    P  ++      G+   G++HL       G  +     VR      
Sbjct: 139 APNGSVYGSLT---TPDPINLHETLDGLAASGVTHLALEASSHGLTQRRLDGVRLKAGAF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL   + + E  +AK E+F+ L   G    ++ D      + A   A G+K I+
Sbjct: 196 TNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDADSDVATEVIAACKARGLK-IF 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G SK    +L +    +  + +EV  +G+  ++     G     N L+  G+  +   
Sbjct: 255 TVG-SKGESLKLLRATPKAAATGIEVAHEGRIYKLELPLAGAFQTSNALVAAGLAIVCGV 313

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             + A+ AL   H +   G+  +     G    +D  Y   P +++    VL  + P   
Sbjct: 314 SAERALTALE--HIEGAPGRLEKVGERNGAPIYVD--YAHKPDALE---KVLCALRPAVA 366

Query: 369 GRRIAVLG 376
           GR + V G
Sbjct: 367 GRLLVVFG 374


>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
 gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
          Length = 493

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 162/391 (41%), Gaps = 60/391 (15%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           IG++P   V  I +DSRS+ P   F  IKG   DGHD+   AV  GA +VV   ++    
Sbjct: 21  IGMLPDQ-VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 79

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               + V   D  +G L     AA+         T+I +TG+ GKT+   ++   +  + 
Sbjct: 80  MIAQVIVKDTDRAVGLL-----AAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMG 134

Query: 135 KTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------- 185
           +  A  G+   N  G+    A    D       +  + +   R +T  V  H        
Sbjct: 135 EKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALGRLA 194

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLK 236
                +A+ T +   HL     +EE   AK  +F    + LEK   + LN DD++ E   
Sbjct: 195 GVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE--- 251

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294
            +  A+    ++++G K++ ADF   +   C    +M       S +V +  GI Y +  
Sbjct: 252 -RYAAMTPFPVWTYGLKNETADF---RAINCEYHDYM------TSFDVEMSEGI-YRVKM 300

Query: 295 NMLMTLGIVSILTADV---------DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           N+L    I ++L A V         +  I+ +    P +GR ++    L    F      
Sbjct: 301 NLLGEFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSELPVQMFV----D 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P +++ AI       P+ +G+ I ++G
Sbjct: 357 YAHTPDAIEKAIEA---AQPYKKGKLIFLVG 384


>gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
          Length = 492

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 143/358 (39%), Gaps = 33/358 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---IINVDDEYGAELIGRLKKDCSDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD--- 309
           S NAD ++  +   S+      Q            +G   AQN+    G +++L A+   
Sbjct: 266 SGNADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNL---AGCIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D  +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 323 FDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
 gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
          Length = 479

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L Q  Q H+        V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA L
Sbjct: 3   HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +      I      V  V DV  AL +       +    +IA+TG+ GK++    + 
Sbjct: 55  VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110

Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167
              S + K  A IG+    I         VP       L+  ++  +     +++ +FE 
Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
               L + R     ++ +IA  T+ +  HL      E    AK ++F   L   G   LN
Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    E +K   H   IK I    K    D ++ +     +   +      +       
Sbjct: 229 SDIEEIEFVKDYLHNHNIKFITVGTK---GDLEITRLNGSLKGQNINFTFNNREYNFNTP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L+ +  +  +    D  I +L      +GR +R     N   F      Y
Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338

Query: 347 NANPASMKAAISVLSQIS 364
              P +++ A++ L  I 
Sbjct: 339 AHTPDALEKALTELKNIK 356


>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
 gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
          Length = 487

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 37/369 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V G++IDSR I     F A+KG   DGH +I  A++ GA  +++  DM      G   I 
Sbjct: 23  VTGVNIDSRKIEKGHLFIAMKGTQTDGHAYIAKAIELGATAILLE-DMPQQYTEGITYIQ 81

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   +D +G   K+A A          ++ +TG+ GKTT   +L      +      + +
Sbjct: 82  VESTEDSVG---KVATAFYGNPSHHLILVGVTGTNGKTTIATLLYNMFRRMGHKCGLLST 138

Query: 143 YNNHI---GVPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------A 187
             N+I    VP      P  ++       M   G E  F+   +H +            A
Sbjct: 139 VCNYIEDKAVPADHT-TPDPIELNALLSEMVKAGCEYAFMECSSHAIHQKRIGGLKFAGA 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL      E   +AK   F+GL K      N DD    ++   + A    T+
Sbjct: 198 LFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNADDKNGMIMVQNTKA----TV 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++     ADF   K  +C     ME+++ GK + V    IG     N+L   G   +L 
Sbjct: 254 KTYSIRTLADFSA-KILEC-HFDGMELEVNGKEVNV--QFIGKFNVSNLLAVYGAAVMLG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +  + ALS  H   GR + +      G+  ++D  Y   P +++  ++ + ++  +G
Sbjct: 310 KDPEDVLVALSALHSVNGRLQPFHSP--NGYTAIVD--YAHTPDALENVLNAIHEVL-NG 364

Query: 368 EGRRIAVLG 376
           +G  I V G
Sbjct: 365 KGHVITVCG 373


>gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID332]
 gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
 gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 492

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   +G++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L    P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 483

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 160/385 (41%), Gaps = 36/385 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L+ +     G  P   + G+  DSR    +  F AIKG   DG  ++  A++ GA  +
Sbjct: 5   DILKGVNCEIKG-DPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAI 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           VV+ ++    G  ++    V+D   A+ K+A        +K T+I +TG+ GKT+   ML
Sbjct: 64  VVDREIKEYPGVTTVL---VEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYML 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L         +G+  N IG  +  +    P  +D       M + G ++++   V  
Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H             IAV T ++  HL     +EE A  K+++F+  ++   I  N DD +
Sbjct: 180 HSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVI--NIDDKY 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++   S A     + ++G    A    +  +   +    +VQ++ K  E+     G  
Sbjct: 238 SSMMIESSKA----RVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   + +  +ALS    K   G+       + F+  ID  Y   P 
Sbjct: 294 SVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
            ++  +  L +   +  GR+I + G
Sbjct: 349 GIQNMMEALKE---YKAGRKILLFG 370


>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus halodurans C-125]
 gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus halodurans C-125]
          Length = 486

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 143/359 (39%), Gaps = 36/359 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I +DSR +     FF IKG   DGHD+   AV  GA  VV    +      LS+PV 
Sbjct: 24  IHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPL-----ELSVPVV 78

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D   A+ +  VA +   + T    +I +TG+ GKTT   ++   +    K    IG+
Sbjct: 79  VVRDSRRAMAQ--VATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMTGLIGT 136

Query: 143 YNNHIG---------VP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP---HIAV 188
               IG          P  L L R   D+        M  +      +  VR     +AV
Sbjct: 137 MYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCDFDVAV 196

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTI-FLNYDDSFFELLKAKSHALGIK 245
            + + P HL     +E    AK  +F  L  T  G +  LN DD       A    + I 
Sbjct: 197 FSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDP----ASADFAEMTIA 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + ++G    ADFQ    +  S  +  E+    + ME+  H IG     N+L       +
Sbjct: 253 QVVTYGIENEADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLAAAAAAYV 312

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +    K+L       GR +  +   +Q F  ++D  Y   P S++  +  + +++
Sbjct: 313 SGVPLQEIKKSLEEVKGVAGRFETVKH--DQPFTVIVD--YAHTPDSLENVLKTVGELA 367


>gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
 gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
          Length = 492

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 145/362 (40%), Gaps = 41/362 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL           T+Y +G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGVELAGRLKKDCPDLTVYGYGF 265

Query: 253 SKNADFQLRKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           S++AD ++  +   S       + SW E + + + +       G   AQN+   + ++  
Sbjct: 266 SEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLL-------GRFNAQNLAACIALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D  +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P
Sbjct: 319 NGYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374

Query: 366 HG 367
            G
Sbjct: 375 QG 376


>gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 171

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS+++     F  I     DGH+++  A+  GA         VAS+   S    
Sbjct: 33  IHGVRIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  VD+ L AL +LA   R      +I ITGS GKTT K+++   L S  + +  
Sbjct: 83  PKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDF 162
            G++N+ IG+PLT+  M  + +F
Sbjct: 143 KGNFNSQIGLPLTILEMKRNTEF 165


>gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
          Length = 479

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L Q  Q H+        V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA L
Sbjct: 3   HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +      I      V  V DV  AL +       +    +IA+TG+ GK++    + 
Sbjct: 55  VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110

Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167
              S + K  A IG+    I         VP       L+  ++  +     +++ +FE 
Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
               L + R     ++ +IA  T+ +  HL      E    AK ++F   L   G   LN
Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    E +K   H   IK I    K    D ++ +     +   +      +       
Sbjct: 229 SDIEEIEFVKDYLHNHNIKFITVGTK---GDLEITRLNGSLKGQNINFTFNNREYNFNTP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L+ +  +  +    D  I +L      +GR +R     N   F      Y
Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338

Query: 347 NANPASMKAAISVLSQIS 364
              P +++ A++ L  I 
Sbjct: 339 AHTPDALEKALTELKNIK 356


>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 507

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 159/371 (42%), Gaps = 35/371 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   FFA++G   DGHDFI  A+ +GA  +V  T   A     S+   
Sbjct: 24  VAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAVAIVAET---APPEDCSVTWL 80

Query: 87  GVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V +   AL ++A A +    RS A +  +TG+ GKTTT  +L   L+   +    +G+ 
Sbjct: 81  HVKNARVALAEMAAAYKGHPARSMA-VGGVTGTNGKTTTAFLLHHLLNHAHRRCGLLGTV 139

Query: 144 NNHIGVPLTLA--RMPVDV----------DFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
              +G  L  A    P  +          D G   + M   SH  + +  TH V    AV
Sbjct: 140 VYDVGGDLKPATHTTPESLELQGLLSEMRDRGCVAVAMEVSSHAID-QHRTHGVPFAAAV 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245
            T ++  HL     +EE   AK+++F      ++G + +N DD +   L+ A     G+ 
Sbjct: 199 FTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVDDIWGRRLVDAHKEHPGLV 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T   +G    AD++    +     +  E++ +G+S+ V    IG     N L  L     
Sbjct: 259 T---YGLGVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQIGQFNVYNSLAALAAAHG 315

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  ++   +KA+       GR +R     N  F   +D  Y   P  +  A+S    + P
Sbjct: 316 MGCNLRDTVKAMQSSPQIPGRMERV-TPDNHSFHVFVD--YAHTPDGLVNALSTARALRP 372

Query: 366 HGEGRRIAVLG 376
               R I V G
Sbjct: 373 E---RIITVFG 380


>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 484

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 166/390 (42%), Gaps = 42/390 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + V+    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +       G+KT + +F   K +DF+  + K  S  S  +V L+G    +    I  
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLEG----IEEFSINI 293

Query: 291 HMAQNMLMTLGIVSI---LTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESY 346
               N+  +LG +     L   +D   + LS V  P  GR +      N  +  +ID  Y
Sbjct: 294 PGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--Y 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P  ++   ++LS +    + R I+V G
Sbjct: 350 AHTPDGLE---NILSTVKAFTKNRMISVFG 376


>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens FZB42]
 gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
          Length = 490

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 166/402 (41%), Gaps = 63/402 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++      + +PV 
Sbjct: 24  ITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL+ L+ A   +   +  +I ITG+ GKT+T  M+        +    IG+  
Sbjct: 79  IVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMY 138

Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG               +  T  +M  + VD  I E+  SH   LG +    H     
Sbjct: 139 IKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVS-SHALSLGRV----HGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236
           IAV T +   HL     +E+   AK+ +F  L      EK     LN DD   ++FE + 
Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFEKVT 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +H      I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+
Sbjct: 254 A-AH------ILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNV 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353
           L             DT   AL     +E +G R R  L   NQ F  ++D  Y   P S+
Sbjct: 307 LAAAATGIAAGLPFDTITSAL-----EELQGVRGRFELVNHNQPFPVVVD--YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +   +VL+      EG+   V+G  C  G+  ++    +AE+
Sbjct: 360 E---NVLNTCKDMTEGKLFVVVG--C-GGDRDKTKRPKMAEI 395


>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
 gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
          Length = 485

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 149/370 (40%), Gaps = 39/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     F A+ G   DGH +I  AV+KGA  ++   ++ A +    +   
Sbjct: 23  ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCE-ELPAELAE-GVTYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ K A        SK  ++ +TG+ GKTT   +L             I +  
Sbjct: 81  QVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140

Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I             P+TL R+          +   E+    + + R     ++    +
Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LKFAGGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AK + F+ + K      N DD    ++   + +     +Y
Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KVY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     +DF+ R      E  +  + L   + E+    IG   A N+L   G   +L  
Sbjct: 255 TYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLGK 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366
             +  + ALS  HP  GR    R    QG+  ++D ++  +     A ++VL+ I     
Sbjct: 311 KEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363

Query: 367 GEGRRIAVLG 376
           G+G+ I V+G
Sbjct: 364 GKGKVITVVG 373


>gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Bacteroides fragilis 638R]
          Length = 485

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 149/370 (40%), Gaps = 39/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ IDSR +     F A+ G   DGH +I  AV+KGA  ++   ++ A +    +   
Sbjct: 23  ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCE-ELPAELAE-GVTYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ K A        SK  ++ +TG+ GKTT   +L             I +  
Sbjct: 81  QVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140

Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I             P+TL R+          +   E+    + + R     ++    +
Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LKFAGGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AK + F+ + K      N DD    ++   + +     +Y
Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KVY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     +DF+ R      E  +  + L   + E+    IG   A N+L   G   +L  
Sbjct: 255 TYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLGK 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366
             +  + ALS  HP  GR    R    QG+  ++D ++  +     A ++VL+ I     
Sbjct: 311 KEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363

Query: 367 GEGRRIAVLG 376
           G+G+ I V+G
Sbjct: 364 GKGKVITVVG 373


>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 487

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 160/377 (42%), Gaps = 53/377 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR ++  + F A++G   DGHD+I  AV +GA L ++  ++   I +  I   
Sbjct: 24  ITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGA-LAIICEELPEQIVN-GITYV 81

Query: 87  GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEML----------TIAL 130
            V D   AL  +A       +A L+    +I ITG+ GKTT   +L          T  L
Sbjct: 82  KVADTSSALATIASNFYGNPSANLK----LIGITGTNGKTTIASLLYQLFQKAGYKTGLL 137

Query: 131 SSIK----KT-YACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           S++K    KT Y    +  + + +   LA M    V++   E+    + + R  T  +R 
Sbjct: 138 STVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVSSHGIHQKR--TEGLRF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              + T ++  HL       E    K + F+ L KT    +N DD        K+ A+ +
Sbjct: 196 EGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKTAFALVNTDD--------KNGAVMV 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299
           +      K+K   + L+ +     Q  +E QL G     +  EV    IG   A N+L  
Sbjct: 248 QNT----KAKKVTYALKSYADYKAQ-ILENQLSGLLLKIQDQEVWVKLIGSFNAYNLLAI 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +L  D   A+K LS      G   R++  +++G  T I + Y   P ++K  +  
Sbjct: 303 FATAELLGLDQIEALKLLSELESVSG---RFQYFISEGNVTAIVD-YAHTPDALKNVLET 358

Query: 360 LSQISPHGEGRRIAVLG 376
           ++ I    E   I V+G
Sbjct: 359 INDIRTKNE-ELITVVG 374


>gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
 gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia rickettsii]
 gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 479

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L Q  Q H+        V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA L
Sbjct: 3   HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +      I      V  V DV  AL +       +    +IA+TG+ GK++    + 
Sbjct: 55  VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110

Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167
              S + K  A IG+    I         VP       L+  ++  +     +++ +FE 
Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
               L + R     ++ +IA  T+ +  HL      E    AK ++F   L   G   LN
Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    E +K   H   +K I    K    D ++ +     +   +      +       
Sbjct: 229 SDIEEIEFVKDYLHNHNVKFITVGTK---GDLEITRLNCSLKGQNINFTFNNREYNFNTP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L+ +  +  +    D  I +L      +GR +R     N   F      Y
Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338

Query: 347 NANPASMKAAISVLSQIS 364
              P +++ A++ L  I 
Sbjct: 339 AHTPDALEKALTELKNIK 356


>gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens LL3]
          Length = 490

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 166/402 (41%), Gaps = 63/402 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++      + +PV 
Sbjct: 24  ITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL+ L+ A   +   +  +I ITG+ GKT+T  M+        +    IG+  
Sbjct: 79  IVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMY 138

Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG               +  T  +M  + VD  I E+  SH   LG +    H     
Sbjct: 139 IKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVS-SHALSLGRV----HGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236
           IAV T +   HL     +E+   AK+ +F  L      EK     LN DD   ++FE + 
Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFERVT 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +H      I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+
Sbjct: 254 A-AH------ILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNV 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353
           L             DT   AL     +E +G R R  L   NQ F  ++D  Y   P S+
Sbjct: 307 LAAAATAIAAGLPFDTITSAL-----EELQGVRGRFELVNHNQPFPVVVD--YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +   +VL+      EG+   V+G  C  G+  ++    +AE+
Sbjct: 360 E---NVLNTCKDMTEGKLFVVVG--C-GGDRDKTKRPKMAEI 395


>gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
 gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
          Length = 502

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 47/381 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P+   N I  DSR +   + F A+KG   DGH +I  AV  GA +VV  T       
Sbjct: 18  GNAPESIEN-IHFDSRKVQANDLFVAVKGTQADGHQYIGQAVALGAKVVVCET--FPKNL 74

Query: 80  SLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           S S     V +   AL  LA         K  ++ ITG+ GKTTT  +L           
Sbjct: 75  SDSATYIQVANSAKALGWLASNYYDHPSKKLKLVGITGTNGKTTTVTLLHQLFRKFGYRV 134

Query: 138 ACIGSYNNHIGVPLTLARM----PVDVDFGIFEL---GMSHLGEIRFLTH-LVRPHI--- 186
             + +  N+I      AR+    P++++  I E+   G +H   +   +H +V+  I   
Sbjct: 135 GLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCF-MEVSSHAVVQERIAGL 193

Query: 187 ----AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A  T I+  HL          +AK + F+ L  T    +N DD    ++   + A 
Sbjct: 194 HFTGAAFTNISHDHLDFHETFANYINAKKQFFDQLPPTAFALINADDKRGMVMLQNTVA- 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             KT  +F   + ADF+ R  +   +  +ME+      +EV    IGY  A N+L    I
Sbjct: 253 --KTQRTFALKQFADFKARVVESSLQGLFMEID----DVEVWFQMIGYFNAYNLLGIYAI 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-------YNANPASMKA 355
             +L  D    +  LS      GR           F  +I ES       Y+  P +++ 
Sbjct: 307 AVLLGEDTTETLTLLSGLQSVPGR-----------FEKIIGESGATGVVDYSHTPDALEN 355

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +  + ++   G+ + I V+G
Sbjct: 356 VLQTIFELRQSGQ-KIITVVG 375


>gi|300023675|ref|YP_003756286.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525496|gb|ADJ23965.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 437

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 7/145 (4%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           R R+ ATIIA+TGS  KTTT  +L+  L   S +   + C G Y + I   L L     D
Sbjct: 32  RERTSATIIAVTGSSAKTTTVALLSHILAGHSKVTSQFLCNG-YGHAIDALLNLRS---D 87

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E G    G I     L++P +A+IT +A  H +    IE +A  K+ + E +  
Sbjct: 88  TRYSVIEQGTKKPGHIPQAAKLLKPDLAIITLVAIEHYATLKSIEAVAQEKSALVEAVPD 147

Query: 220 TGTIFLNYDDSFFELLKAKSHALGI 244
            G + LN+DD     +  ++ A  I
Sbjct: 148 DGLVVLNFDDPNVRAMADRTRARSI 172


>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 486

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 147/368 (39%), Gaps = 45/368 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           IDSR +     + A++G   DGH FI  A++KGA  VV   + +    + ++    V D 
Sbjct: 28  IDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAAAVVC--EELPETLAENVTYILVKDS 85

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148
             AL  LA         K  +I +TG+ GKT+   +L     ++    A + +    IG 
Sbjct: 86  SKALGYLASNYYGNPSQKLKLIGVTGTNGKTSVSTLLFDVFKNLGYPAALLSTVEIRIGE 145

Query: 149 --VP--------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             +P        +T+ R+  +      +F   E+    + + R     +   IA  T + 
Sbjct: 146 EIIPATHTTPDVITINRILAEAVEKGCEFAFMEVSSHGIAQNRI--EGLHFKIAGFTNLT 203

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYS 249
             HL      EE    K   F+ LE T     N DD       +  KAK  +  +KT+  
Sbjct: 204 HDHLDYHKTFEEYLKTKKRFFDELEDTAIAITNVDDKNGNVMLQNTKAKKKSYALKTMAD 263

Query: 250 F-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + GK    DF         ++ W    L GK               N+L+  GI + L  
Sbjct: 264 YHGKLLEVDFNGMLLNFNGKEFW--TTLTGK-----------FNVYNLLLVFGIAAELGF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + D  ++A+S      GR + ++   + G F ++D  Y   P +++  +  ++ I    E
Sbjct: 311 EQDEILQAISKLKRVSGRFETFKS--DGGIFFIVD--YAHTPDALENILDSINDIRTKNE 366

Query: 369 GRRIAVLG 376
            R I V G
Sbjct: 367 -RLITVFG 373


>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
 gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
          Length = 479

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 163/404 (40%), Gaps = 50/404 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ +S+ + P + FFAIKG   DG+DFI  AV KGA + VV+T+         +P F
Sbjct: 15  VGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGA-VAVVSTEPAKK--KYPVPYF 71

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD+  A+ K AV            I ITG+ GKT+   +L    +      + IG+ N
Sbjct: 72  QVDDIDLAMAKAAVKFYKNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIPCSVIGTIN 131

Query: 145 NHIGVPLTLARMPVDVDFGIFELGM-----------------SHLGEIRFLTHLVRPHIA 187
             I   +  A+ P      ++   M                 SH  E++ +  L    +A
Sbjct: 132 YRINGEV-FAKAPNTTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKRVFGL-NFDVA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALG 243
           + T +   H+      E   +AK ++F+ L    +   T  +N DD +   L  K  A  
Sbjct: 190 LFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQYGLRLADKIKAKT 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S  +++N    L         + +    +G+S  +  + +G H   N +  +   
Sbjct: 250 TLIPVSLVEAENVKESL---------NGVTFSYKGESASI--NLLGKHNLYNAVFAVKAA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+ TA+K ++      GR +R      Q F+  +D +Y     + ++ +     +
Sbjct: 299 MAYGVDLQTALKGIAKLQGIPGRMQRVNKG--QPFYVFVDFAY-----TTESLMKAYETL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            P+  G  I V G  C  G         L  + +  N SHV L+
Sbjct: 352 EPYKNGNIITVFG--C--GGDRDRTKRPLMGLAACQNSSHVLLT 391


>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 2; AltName:
           Full=Meso-A2pm-adding enzyme 2; AltName:
           Full=Meso-diaminopimelate-adding enzyme 2; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           2
 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum ATCC 824]
 gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum EA 2018]
          Length = 483

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 151/370 (40%), Gaps = 37/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           + GIS +S+ +     F +IKG  +DGHDFI  A Q GA  V+++ D   SI + + + V
Sbjct: 23  IEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIIDEDFHDSIENTTLVKV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143
                 L  L  L      R +  ++ +TG+ GKTT    +   L +   +   IG+   
Sbjct: 83  KNSKVALACLCNLFYEEPSR-ELNLVGVTGTNGKTTVIHYIRDMLEAFGNSTGTIGTLGY 141

Query: 144 ---NNHIGV-------PLTLARMPVDVDF-------GIFELGMSHLGEIRFLTHLVRPHI 186
              +  I V       P  L    +  DF        + E+  S L  ++         +
Sbjct: 142 ELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNAVMEVTSSAL--MKHRVDYCSFKV 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T ++  HL     IE   + K ++F+ +   G I  N DD+    +  K    G   
Sbjct: 200 GVFTNLSQDHLDEHGTIENYKNEKIKLFK-MCPVGVI--NLDDNIAGEIIEK----GTCE 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +++G   NAD                V  +G S +V  +  G     N+L  +G +  L
Sbjct: 253 FFTYGVLTNADLTASDMVYKPNSVSFNVHYKGISSKVKVNVPGEFTVYNVLAAIGSLLCL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D ++ +K +S   P  GR +     LN+    +ID  Y   P S++  + +  +++  
Sbjct: 313 GIDFESILKLVSSIKPVLGRLETINNPLNKNI--IID--YAHTPDSLEKLLIMAREMT-- 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 -NGRIITVFG 375


>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
 gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
          Length = 484

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 166/390 (42%), Gaps = 42/390 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + ++    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +       G+KT + +F   K +DF+  + K  S  S  +V L+G    +    I  
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLEG----IEEFSINI 293

Query: 291 HMAQNMLMTLGIVSI---LTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESY 346
               N+  +LG +     L   +D   + LS V  P  GR +      N  +  +ID  Y
Sbjct: 294 PGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--Y 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P  ++   ++LS +    + R I+V G
Sbjct: 350 AHTPDGLE---NILSTVKAFTKNRMISVFG 376


>gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 463

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 147/336 (43%), Gaps = 45/336 (13%)

Query: 43  FFAIKGPHYDGHDFILH--AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           ++  +  H +G D ++H  AV++       N ++ A+  +L+IPV    ++L        
Sbjct: 53  YYGHRPEHVEGADIVVHSTAVKQD------NVELQAA-RALNIPVIHRSEML-------- 97

Query: 101 AARLRSKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            ARL      IA+TG+ GKTTT  M+  T+  + +  T+  +G     +G      + P 
Sbjct: 98  -ARLMDDRVGIAVTGAHGKTTTTSMIAFTMEQNGLDPTF-IVGGVVADLGDNAKAGKGP- 154

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217
                 F +  +   +  FL +  RP IAV+T + P HL ++ G  E +  A       +
Sbjct: 155 ------FVVAEADESDGSFLHY--RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFIRQI 206

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + ++ DD     L++ +       + ++G +++AD   R  +     S  +V + 
Sbjct: 207 PSEGLLVMSADDDKLRELRSAARC----RVVTYGFAEDADITARHVELGDRASRSDVLVN 262

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +  +   + G H   N L  + +   +    + A  ALS FH   G  +R++     
Sbjct: 263 GEFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFH---GAKRRFQVVAEM 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           G   ++D+ Y  +P  ++A I+          GRRI
Sbjct: 320 GGVLIVDD-YAHHPTEIRATIAAAKST-----GRRI 349


>gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA6140]
          Length = 492

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
 gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
          Length = 479

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L Q  Q H+        V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA L
Sbjct: 3   HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +      I      V  V DV  AL +       +    +IA+TG+ GK++    + 
Sbjct: 55  VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110

Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167
              S + K  A IG+    I         VP       L+  ++  +     +++ +FE 
Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
               L + R     ++ +IA  T+ +  HL      E    AK ++F   L   G   LN
Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    E +K   H   IK I    K    D ++ +     +   +      +       
Sbjct: 229 SDIEEIEFVKDYLHNHNIKFITVGTK---GDLEIIRLNGSLKGQNINFTFNNREYNFNTP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L+ +  +  +    D  I +L      +GR +R     N   F      Y
Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338

Query: 347 NANPASMKAAISVLSQIS 364
              P +++ A++ L  I 
Sbjct: 339 AHTPDALEKALTELKNIK 356


>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
          Length = 485

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 41/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + F A+KG   DGH +I  A++KGA  V V  +    + +  +   
Sbjct: 25  ITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEKGA--VAVVCEAWPEVQAEGVTYV 82

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+ +L+        SK  ++ +TG+ GKTT   +L               +  
Sbjct: 83  QVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVC 142

Query: 145 NHIG-----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI------- 186
           N+I             P+TL R+      G           +   +H V  H        
Sbjct: 143 NYIDDEAVPTEHTTPDPITLNRL-----LGRMADEGCKYAFMEVSSHAVAQHRIAGLKFA 197

Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             + T +   HL      E    AK   F+GL K      N DD    ++   + A+   
Sbjct: 198 GGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNVDDRNGMIMVQNTKAV--- 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + ++     ADF+ +  ++  E   ++V   GK + V    IG     N+L        
Sbjct: 255 -VNTYSLRAVADFKAKVLEESFEGMCLDV--NGKEVSVPF--IGRFNVSNLLAVYAAAVC 309

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +  + ALS   P  GR +  R    +G   ++D  Y   P ++   +S +++I  
Sbjct: 310 MGRGAEDVLVALSTLRPVNGRFETIRS--REGVTAIVD--YAHTPDALVNVLSTVNEILK 365

Query: 366 HGEGRRIAVLG 376
              G  I V G
Sbjct: 366 R-RGEVITVCG 375


>gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
 gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
          Length = 483

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 151/375 (40%), Gaps = 45/375 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR I P   F A++G   DG  +I  A+++GA  +V + ++V  + +LS+P+ 
Sbjct: 21  ITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVV--LENLSVPLL 78

Query: 87  GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VL A + LAVAA         T++A+TG+ GKT+    L    + +    A IG+ 
Sbjct: 79  ---RVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASIGTL 135

Query: 144 ------NNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                  N  G      P+ L R+  +     V     E     L + R     VR   A
Sbjct: 136 GVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRL--DGVRLTAA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE-----LLKAKSHA 241
             T +   H+   + +E+   AK  +F+  L +  +  +  DD + +     L +A+ H 
Sbjct: 194 AFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVIDTLTQARRHV 253

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L I     F      + Q  + KQC     +E +L+           G     N LM  G
Sbjct: 254 LTIGRKGQFITINRIEHQ--RSKQC-----VECRLENNIYTFNLPLAGDFQVNNALMAAG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        D   ++L       GR +      N     +    Y   P +++    VL 
Sbjct: 307 LAISTGISPDKVFRSLETLQGAPGRLELVGKTENNASVYI---DYAHKPEALE---QVLL 360

Query: 362 QISPHGEGRRIAVLG 376
            + P  +GR I V G
Sbjct: 361 SVRPFTQGRLILVFG 375


>gi|253828104|ref|ZP_04870989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511510|gb|EES90169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 478

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 123/302 (40%), Gaps = 53/302 (17%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167
           TIIA+TGS GKT+ K  L   L    K YA   S N   G+   + + +    D  I E 
Sbjct: 156 TIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIYIVEA 215

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFL 225
           G   +G+I+ +  L++P IAVI  I PAH+  F  ++ I  AK EI +   L+K      
Sbjct: 216 GARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQSPNLQKV----Y 271

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NY D+                      +   +F           S ++  L G S  + +
Sbjct: 272 NYKDN----------------------TPPQNFYGNMIWFPQNVSSVDTSLNGTSFSLTY 309

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------ 339
           +G        +L    +     A++  AI+    F     R  +  C + +G        
Sbjct: 310 NGEKMDFETKILGAFNV-----ANISAAIQVAKDFGISSERIIKQVCRM-EGVSHRLSKI 363

Query: 340 -----TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 ++D+SYN N   M  AI    ++S   +GR++ V   + E    S+  +I LAE
Sbjct: 364 MVNDKVILDDSYNGNLDGMLEAI----RLSSLYDGRKVIVTPGLVES---SKEANIALAE 416

Query: 395 VL 396
            +
Sbjct: 417 AI 418


>gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 440

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 158/401 (39%), Gaps = 64/401 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++  S    P   F A+ G    G  F   A+Q GA  ++ + +  AS   L      V 
Sbjct: 24  VAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQNGASGLLTDVEPEASNYVL------VT 77

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A+ KL           I+ + G+ GKTT KE L  +L+ ++  ++  G+ N  I +
Sbjct: 78  DAFEAVKKLGETLVRSYSGKIVVVLGASGKTTLKE-LARSLAPVR-VWSSYGNRNTIISL 135

Query: 150 PLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              L       ++  + I E G+    +      +  P+ A+ T++   HL     ++  
Sbjct: 136 VTDLFNERESALNAPYWILEFGIHDKKDADDFLQVFNPYAALFTSLGAEHLEFLENVD-- 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDD---------------SFFELLKAKSHALGIKTIYSFG 251
            + +  +  G+  T    L  D+               ++F++         +  +   G
Sbjct: 194 VAVRTNLKVGMAATKRFALVSDEYSVEDAILFGSPQTSAWFDISSFTCDGCTLGKLMCHG 253

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADV 310
           + K  D  L  W + S QS     + G +   V  G G   +    L T+ I        
Sbjct: 254 EEK--DVVLPFWGKRSAQS-----VAGAAAFWVSEGFGLDELPWENLDTINIW------- 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                         GR +  R      FF    ++YNANP SMK  + V+S++ P+G  +
Sbjct: 300 --------------GRQQLTRWGDLLIFF----DAYNANPESMKEFLEVVSEV-PYG--K 338

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  V+GDM E+GE S  +H  LA  L    I ++ L G  V
Sbjct: 339 KGLVIGDMLELGEYSHYWHRKLAHWLKKSGIQYLILVGNEV 379


>gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 492

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 142/363 (39%), Gaps = 43/363 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +    IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188
            L         PVDV   ++                  L  S +  + F +       A+
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELL--KAKSHALGI 244
            T +   HL     +E   + K+ +F   GL+      +N DD +   L  + K   L +
Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDGYGAELAGRLKKDCLDL 258

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++ 
Sbjct: 259 -AVYSYGFSEHADIRITNFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLC 317

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +D  +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I 
Sbjct: 318 ANGYPLDKVLAVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIK 373

Query: 365 PHG 367
           P G
Sbjct: 374 PQG 376


>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
 gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
          Length = 485

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 41/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85
           + G+ IDSR +     F A+ G   DGH +I  AV+KGA  ++     V  + G   I V
Sbjct: 23  ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCEELPVELAEGVTYIQV 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +D +G   K A        SK  ++ +TG+ GKTT   +L             I + 
Sbjct: 83  ADSEDAVG---KAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTV 139

Query: 144 NNHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N+I             P+TL R+          +   E+    + + R     ++    
Sbjct: 140 CNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LKFAGG 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK + F+ + K      N DD    ++   + +     +
Sbjct: 198 IFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KV 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y++     +DF+ R      E  +  + L   + E+    IG   A N+L   G   +L 
Sbjct: 254 YTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP-- 365
              +  + ALS  HP  GR    R    QG+  ++D ++  +     A ++VL+ I    
Sbjct: 310 KKEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVL 362

Query: 366 HGEGRRIAVLG 376
            G+G+ I V+G
Sbjct: 363 EGKGKVITVVG 373


>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 496

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 147/367 (40%), Gaps = 47/367 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD- 90
           DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+ D 
Sbjct: 29  DSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQWNPEWNVPNQGIKDL 88

Query: 91  -----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                +L A     V+  L S   I  +TG+ GKT+  + L  A   +    A IG+  N
Sbjct: 89  KHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIGTVGN 148

Query: 146 HIGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVI 189
                L  T    P  V+                  E+    L + R   + V    AV 
Sbjct: 149 GFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQAR--VNGVPFQTAVF 206

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FEL---LKAKSHALG 243
           T +   HL     +E   + K+ +F   GL+      +N DD +  EL   LKA    L 
Sbjct: 207 TNLTRDHLDYHGTMEAYGAIKSRLFYWRGLKHA---VINSDDPYGAELIGRLKADRPDL- 262

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTL 300
              +YS+G  + AD ++  +   S+   MEV L    GK   V    +G   AQN+   +
Sbjct: 263 --AVYSYGFGEQADIRITGFAAASDG--MEVALDTPWGKG-SVKTRLLGRFNAQNLAACV 317

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++      +D  + AL    P  G   R  C +  G   L+   Y   P +++ A++ L
Sbjct: 318 GVLCADGHPLDKVLAALEKIRPATG---RMDCIIESG-KPLVVVDYAHTPDALEKALATL 373

Query: 361 SQISPHG 367
            +I P G
Sbjct: 374 QEIKPQG 380


>gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
 gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
          Length = 484

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 151/367 (41%), Gaps = 36/367 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I++DSR +     F A+KG H DGHDFI  A+ KGA + ++    V       +PV  VD
Sbjct: 22  ITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGA-VAILCERRVPIQHDTQVPVCVVD 80

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +   L +LA      +  K  +I ITG+ GKT+T + +  +L  + +    IG+    +
Sbjct: 81  GLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGTNGQGL 140

Query: 148 GVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
              L  TL   P DV     EL         F    V  H              AV T +
Sbjct: 141 WGQLSDTLNTTP-DVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAVFTNL 199

Query: 193 APAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +  HL     +E    AK  +  + GL       +N DD + +  + +  A   + ++++
Sbjct: 200 SRDHLDYHHSMEAYFEAKWRLMRWPGLRNA---VVNLDDEWVQKNRERIMA---ERVWTY 253

Query: 251 GKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               +AD Q  +   C E     +V+     +++    +G     N L  L ++      
Sbjct: 254 ALETDADVQALE-VNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVP 312

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           V+TA + +S  +P +GR +  R A    +   +   Y   P +++ A   L     H  G
Sbjct: 313 VNTAARVISNCNPVKGRMETLRSA----YSPTVVVDYAHTPDALEKA---LQSCREHVNG 365

Query: 370 RRIAVLG 376
           R + + G
Sbjct: 366 RLVVIFG 372


>gi|224419171|ref|ZP_03657177.1| D-alanyl-D-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313142677|ref|ZP_07804870.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313131708|gb|EFR49325.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 485

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 123/302 (40%), Gaps = 53/302 (17%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167
           TIIA+TGS GKT+ K  L   L    K YA   S N   G+   + + +    D  I E 
Sbjct: 163 TIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIYIVEA 222

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFL 225
           G   +G+I+ +  L++P IAVI  I PAH+  F  ++ I  AK EI +   L+K      
Sbjct: 223 GARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQSPNLQKV----Y 278

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NY D+                      +   +F           S ++  L G S  + +
Sbjct: 279 NYKDN----------------------TPPQNFYGNMIWFPQNVSSVDTSLNGTSFSLTY 316

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------ 339
           +G        +L    +     A++  AI+    F     R  +  C + +G        
Sbjct: 317 NGEKMDFETKILGAFNV-----ANISAAIQVAKDFGISSERIIKQVCRM-EGVSHRLSKI 370

Query: 340 -----TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 ++D+SYN N   M  AI    ++S   +GR++ V   + E    S+  +I LAE
Sbjct: 371 MVNDKVILDDSYNGNLDGMLEAI----RLSSLYDGRKVIVTPGLVES---SKEANIALAE 423

Query: 395 VL 396
            +
Sbjct: 424 AI 425


>gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
 gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
          Length = 480

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 158/386 (40%), Gaps = 56/386 (14%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +  Q  V G+SI+S+++   + FF +KG + D +DFI  A+ +   LV+ +    A+I  
Sbjct: 8   LFKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSATID- 66

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               +  V+DV  AL +       +    +IA+TG+ GK++    +    S + K  A I
Sbjct: 67  ---KIIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASI 123

Query: 141 GSYNNHIGVPL--------------TLARMPV----------DVDFGIFE-----LGMSH 171
           G+    IGV +              TL  +            ++++  FE     L  + 
Sbjct: 124 GT----IGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQAR 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDS 230
           LGEI+        +IA  T+ +  HL      E    AK ++F E L + G   LN D  
Sbjct: 180 LGEIKV-------NIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIE 232

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E +K       IK I + GK    D Q+ K     +   +      +        IG 
Sbjct: 233 EIEFIKDYLLNHNIKFI-TVGKK--GDVQITKINGSLKGQNISFAFNNRECSFNTSIIGS 289

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L+    +  +  D +  ++ L+   P +GR +R     N   F      Y+  P
Sbjct: 290 FQASNLLIAALSIHYIGCDFNKIVEILTQVKPVKGRMERID---NTNIFV----DYSHTP 342

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++ A++ L  I    + + I V G
Sbjct: 343 DALEKALTELKNIKLR-DSKLIVVFG 367


>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
 gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
          Length = 490

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 40/303 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84
           + GI  DSR I     F A+KG   DGH+FI  A+  GA +++V  ++  S       I 
Sbjct: 21  IEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEENIEVSKYDKYEDIS 80

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V+DV   L  +A       + K  II ITG+ GKTT+    +  L +I +  A IG+
Sbjct: 81  FVFVEDVRKHLGIIASNYYGYPQDKIKIIGITGTNGKTTS----SYILENILEKTARIGT 136

Query: 143 YNNHI---------GVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             N I           P +L  + +        V++ I E+  SH  EI  + ++++   
Sbjct: 137 TGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEVS-SHALEIGRV-NMLKFDS 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGI- 244
           A+ T +   HL     +E   +AK +IF  L  +GT  +N DD + + +++ K  A  + 
Sbjct: 195 AIFTNLTQDHLDFHKTMENYFNAKRKIFSMLRNSGTGTVNIDDGYGKRIIEEKKDAENVC 254

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            KT+    K KNAD     + + +E +       G  +++VH+   Y    N++    + 
Sbjct: 255 YKTVSI--KDKNADL----YGEIAEYTN-----DGMKIKIVHNDKEYFANINLVGEYNLY 303

Query: 304 SIL 306
           ++L
Sbjct: 304 NVL 306


>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
 gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
          Length = 487

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 149/373 (39%), Gaps = 44/373 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V G++IDSR I     F A+KG   DGH FI  A++ GA  V+   DM      G   I 
Sbjct: 23  VTGVNIDSRKIKEGHLFVAMKGTQVDGHKFIPKALELGAKSVLCE-DMPEEKVEGVTYIQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  L      R K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VASTEDAVGKVATLFYGDPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVC 140

Query: 145 NHI---GVP------------LTLARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N+I    +P            + L +M     ++   E     +    +G ++F   L  
Sbjct: 141 NYIEDEAIPADHTTPDPIELNMLLGKMVEAGCEYAFMECSSHAIAQKRIGGLQFAGGL-- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   HL      E   +AK   F+GL KT     N DD    ++   + A  
Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLSKTAFAITNADDKNGMIMVQNTKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T+ ++     ADF+ R   +C     M +++ G+  EV    IG     N+L   G  
Sbjct: 252 --TVKTYSTRSMADFRARIL-EC-HFGGMYLEIDGR--EVGVQFIGKFNVSNLLAVYGAA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  +S  H   GR +  +    +G+  ++D  Y   P +++  ++ + ++
Sbjct: 306 IMLGKKPEDVLVVMSTLHSVSGRLEPIQSP--EGYTAIVD--YAHTPDALENVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
                G  I V G
Sbjct: 362 LEGKGGEVITVCG 374


>gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 451

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 16/223 (7%)

Query: 10  LLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L+Q++     G +P  FV +G+  +  +I   + F  +KG  +DGH  I  AV+ GA   
Sbjct: 9   LIQSVSKEMSGDIPLTFVAHGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAAVENGAAAS 68

Query: 69  VVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +   ++ V      + P+F V+D   A+ ++A         T +A+TG   +  T+   T
Sbjct: 69  LWRISEPVPKTLDRTFPLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGDYTRHLTR---T 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +    +KK Y         +G PL    ++  MP D D  +F++       +R  + L+ 
Sbjct: 126 VLAGMLKKNYRVYLPEET-LGEPLPFFSSVLSMPDDTDVILFDVPSRTDDIVRSASELII 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           P +AV+      H ++      IA     I  G++KTGT+F++
Sbjct: 185 PQLAVLCCHRDQHEAD------IAGHAVHIEAGMKKTGTVFVD 221


>gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
 gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
          Length = 517

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 151/366 (41%), Gaps = 35/366 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V+G+S DSR I P   F A++G   DGH  I  A++ GA + +V     A +  G   + 
Sbjct: 36  VSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEAGA-VAIVCEAYPAELRDGVCYLR 94

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
           V      L  L+K         +  +I +TG+ GKTTT  +++  L++       IG+  
Sbjct: 95  VTESRKALAELSK-NCYGNASDQLMLIGVTGTNGKTTTARLISSMLNAAGIPAGYIGTGL 153

Query: 143 ---YNNHIGVPLT---------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               N  I +  T         L R  VD       + +S    +    H +R   AV T
Sbjct: 154 CRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVMEVSSHALVLDRVHGLRFRSAVFT 213

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + P HL     +EE A+AK  +F  L   G   LN DD      +A   A G+   Y +
Sbjct: 214 NLTPEHLDFHETMEEYAAAKRLLFSRLTDDGFAVLNADDP-----QAGFMAAGLPNDYLY 268

Query: 251 -----GKSK--NADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                G S   ++D + R +   S  E S  EV    +S  +     G +   NML    
Sbjct: 269 CCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSATMQVPLPGEYNVMNMLEAFA 328

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D   A+  L+      GR +R   A ++    ++D  Y   P +++ A+  L 
Sbjct: 329 VGISLGLDPAKALAGLAESEAVPGRMERIWSA-DRSRCGVVD--YAHTPDALQKALETLR 385

Query: 362 QISPHG 367
            ++P G
Sbjct: 386 AVTPSG 391


>gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID18]
 gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
          Length = 492

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
          Length = 492

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
 gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
          Length = 485

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 37/389 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L+A+    I       VNGI +DSR +     F A+KG   DGH++I  A++ GA 
Sbjct: 3   LENMLKAVNAQQIIGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENGA- 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            V+V   +   I S ++    + D   A+ KLA        SK  ++ +TG+ GKTT   
Sbjct: 62  TVIVCEQLPVQIES-NVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGIFELGM 169
           +L             I +  N+I             P+T    L RM  +    +F    
Sbjct: 121 LLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFMEVS 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH    + ++ L      + T I   HL      E    AK   F+ L K      N DD
Sbjct: 181 SHSVVQKRISGLTFAG-GIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKQAFALTNLDD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + A     + ++      DF+     +  E S+  + L   + EV    IG
Sbjct: 240 KNGTVMTQNTQA----KVAAYSLHSLCDFK----GKVLEDSFDGMLLDINNREVNVQFIG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L   G   +L    +  +  LS+  P  GR    R    +G+  ++D ++  +
Sbjct: 292 RFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFDAKRSP--KGYTAIVDYAHTPD 349

Query: 350 PASMKAAISVLSQISP--HGEGRRIAVLG 376
                A ++VL  I     G G+ I V+G
Sbjct: 350 -----ALVNVLEAIHEVLRGRGQVITVVG 373


>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 488

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 25/251 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ +S+++ P + F AI G   DGH FI  A+  GA  V+   +    IG  S+P  
Sbjct: 23  ITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAKAVIGEKE----IGKQSVPYI 78

Query: 87  GVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V D   A   LA+AA+      ++KA +I ITG+ GKTTT  ML   L +   T +  G
Sbjct: 79  KVTDSRKA---LALAAKRFYKNEQNKAIMIGITGTNGKTTTSYMLKHILETCGHTCSLFG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE----IRFLTHLVRPH--------IAVI 189
           S  N +   +  A     +D    +  ++   +    +   +H +  H          + 
Sbjct: 136 SVQNIVNGQVLPATTNTTMDALELQKQLAASNDQVVIMEVTSHALMQHRVYGIEFDYGLF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +E    AK  +FE L   G   +     + E   A      +  IY+
Sbjct: 196 TNLSQDHLDYHGSMEAYFGAKLRLFEQLAPAGKAVIQAQGEWGEAFLASLKQRDVPYIYT 255

Query: 250 FGKSKNADFQL 260
            G ++ A  QL
Sbjct: 256 LGGAE-ATLQL 265


>gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
 gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
          Length = 494

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 154/373 (41%), Gaps = 35/373 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLS- 82
           V G+++DSR +     F A+ G +  G  FI  A+++GA  ++ +     + A + S S 
Sbjct: 23  VTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGATAILTDPAGARLAADVPSASD 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTK--------EMLTIA-- 129
           + V   DD       LA AA L S     T+IA+TG+ GKT+          EM   A  
Sbjct: 83  VAVVLADD---PRQTLAFAAALWSGGQPNTMIAVTGTNGKTSVSTFCRQIWVEMGYAAAN 139

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLVRPH 185
           L +     A     N+    P+TL R   +    G+    M   SH  + R L   VR  
Sbjct: 140 LGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAMEASSHGLDQRRLDG-VRIM 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T     HL      E    AK  +F   L    T  +N DD     +   ++ LGI
Sbjct: 199 AAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNLDDPKGPEVAEIAYDLGI 258

Query: 245 KTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             I   G+S++AD Q L +W   + Q  +    +GK+     + IG   A N+L+   +V
Sbjct: 259 DVI-GVGRSEHADLQLLAQWFDATGQD-LRFDFEGKTYVKRLNLIGGFQADNVLLAAALV 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               AD D     L       GR        + G    +D ++  +     A  + LS +
Sbjct: 317 IACGADADEVFDTLPHLTTVRGR-MELAATRDNGAAVFVDYAHTPD-----AVATALSAM 370

Query: 364 SPHGEGRRIAVLG 376
            PH  GR IA++G
Sbjct: 371 RPHVMGRLIAIIG 383


>gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
 gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
          Length = 492

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
          Length = 492

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
 gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
          Length = 485

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 32/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           + G++IDSR I     F A+KG   DGH FI  A++ GA + ++  DM   +      I 
Sbjct: 23  IKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELGA-VAILLEDMPEELNEKVTYIQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   ++  G +  +      R K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VASTEEEAGKVATMFYGEPSR-KLKLVGVTGTNGKTTIATLLYRMFREFGHKVGLLSTVC 140

Query: 145 NHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189
           N+I    VP +    P  ++       M   G E  F+   +H +  H          + 
Sbjct: 141 NYINDEEVPASHT-TPDPIELNCLLAKMVEAGCEYAFMECSSHAIHQHRIGGLEFVGGIF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      E   +AK   F+GL KT     N DD    ++   + A    T+ +
Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNADDKNGMIMVQNTKA----TVKT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +   + ADF+ +  +   E  ++EV   GK + V    IG     N+L   G   +L   
Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEV--DGKEVGV--QFIGKFNVSNLLAVYGAAIMLGKK 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  + A+S      GR +  +    +G+  ++D  Y   P +++  +S +  +     G
Sbjct: 312 PEDVLIAMSTLKSVNGRLEPIQSP--EGYTAVVD--YAHTPDALENVLSAIHDVLDGKGG 367

Query: 370 RRIAVLG 376
             I V G
Sbjct: 368 HVITVCG 374


>gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 492

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
 gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
          Length = 492

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  +  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F  +GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWQGLQHA---VINIDDGYGAELVCRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q            +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L    P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLGKICPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 486

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 25/251 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I+ DSR +   + F  +KG   DGH +   AV  GA ++V+  D+  +I    I + 
Sbjct: 23  INKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNGAKVIVIQDDV--NIDDKEITIV 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              D   AL  +          K  II ITG+ GKTTT  M+   L    K    IG+  
Sbjct: 81  KCSDTRKALALMGANYYGNPSEKMKIIGITGTNGKTTTAFMIKDILECAGKKVGLIGTIA 140

Query: 145 NHI-GVPLTLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I G  +   R   +               V++ + E+    L   R   + V+    +
Sbjct: 141 NYICGEKIHTERTTPESLELQELFGEMVEKGVEYCVMEVSSHSLALDR--VYGVKFECGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E    AK ++F   E++    +N DD++   +      L  + IY
Sbjct: 199 FTNLTRDHLDFHKTFENYYDAKFKLF---ERSCIKVINVDDNYGIQVLKDCQKLNAENIY 255

Query: 249 SFGKSKNADFQ 259
           SF    ++D++
Sbjct: 256 SFSVKSDSDYK 266


>gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia montanensis]
          Length = 479

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 45/380 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L Q  Q H         V G+SI+S+++  ++ FFAIKG + DG+ FI  A+ KGA L
Sbjct: 3   HNLKQLFQQHK--------VKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +      I      V  V DV  AL++       +    +IA+TG+ GK++    + 
Sbjct: 55  VITDNKKNIVIDK----VIYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIA 110

Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167
              S + K  A IG+    I         VP       L+  ++  +     +++ +FE 
Sbjct: 111 QTHSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
               L + R     ++ +IA  T+ +  HL      E    AK ++F   L   G   LN
Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    E +K   H   IK I + GK    D ++ +     +   +      +       
Sbjct: 229 SDIEEIEFVKDYLHNHNIKFI-TVGKK--GDLEITRINCSLKGQNINFTFNNREYNFNTP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L+ +  +       D  I +L      +GR +R     N   F      Y
Sbjct: 286 IIGSFQASNLLIAVLSMHYTGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338

Query: 347 NANPASMKAAISVLSQISPH 366
              P +++ A++ L  I  H
Sbjct: 339 AHTPDALEKALTELKNIKLH 358


>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 519

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 152/371 (40%), Gaps = 35/371 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPV 85
           +  ++ DSR + P   F AI G   DGH F+  A+++GA ++V   D+       + + V
Sbjct: 49  ITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQGAAVIVHQADLARYHDDVVYLKV 108

Query: 86  FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                +LG      +A+R       K T+  ITG+ GKT++   LT  L +  K  A +G
Sbjct: 109 TDCRRLLG-----HIASRFFGHPSEKITVTGITGTNGKTSSTYFLTGILRAAGKKCARMG 163

Query: 142 SYNNHIGVPL-------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-- 186
           + +N IG  +             T A +   V  G  +L M    +   L  L   H   
Sbjct: 164 TIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGCSDLVMEASSQALDLDRLTDVHFDY 223

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK- 245
           A+ T +   HL      E    AKA +F+  EK   I  N DD +   L  +      K 
Sbjct: 224 ALFTNLTQDHLDYHKTFEAYFEAKARLFDQTEKAAII--NRDDPWGRKLINRIRERHPKL 281

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I ++G+   AD++L      +  S   +Q   +   +    +G  M  N + T  I++ 
Sbjct: 282 KIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEKETIFLDVLGRFMVYNAVGT--IIAA 339

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D A    ++       G+  R   N  F  ++D  Y   P +++   ++L  +  
Sbjct: 340 REQGIDWAAIKAALADAPVVEGRMERIKTNLDFDIVVD--YAHTPDALE---NLLKTVKE 394

Query: 366 HGEGRRIAVLG 376
              GR IAV G
Sbjct: 395 LARGRVIAVFG 405


>gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
 gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
          Length = 506

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 162/399 (40%), Gaps = 51/399 (12%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +LL  I+   I G + +  +  IS DSR+I    AF  I+G   DGH F+  A + GAGL
Sbjct: 19  ELLSYIKVKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGAGL 78

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEM 125
            + + D+    G   IPV  V D L  +  L+  +  +   K  ++ ITG+ GKTTT  +
Sbjct: 79  FIASKDIADKAG--DIPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTSYL 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL--TLARMPV--------------DVDFGIFELGM 169
           +     ++      IG+ ++ IG  +  T    PV                D  + E+  
Sbjct: 137 INHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEVSS 196

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTI 223
             L   R +        AV T ++  HL     +   A  K  +F  L       K  T 
Sbjct: 197 HALALDRVIG--CDFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLKTA 254

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK-----WKQCSEQSWMEVQLQ 277
            LN DD + E  KA + A     + ++G   K ADF   K     WK        ++   
Sbjct: 255 VLNIDDKYSEEYKAHTPA----EVITYGIDDKTADFYADKIFFDDWKM-----RFDLHFL 305

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G   +V  + +G     N+L  +         V  AI+AL  F    GR +      ++ 
Sbjct: 306 GDVYKVETNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMETVHT--DKN 363

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +  +ID  +   P  +   +  L+++ PH   R I ++G
Sbjct: 364 YKIIID--FAHTPDGLMKVLETLNKV-PH--NRIITLIG 397


>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
 gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
          Length = 498

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 36/346 (10%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           D++  I+  +I G +P   VN IS DSR I   + F AIKG   DGH+FI   +++GA L
Sbjct: 5   DIIDNIKIKTIYGKLPDS-VNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQGAAL 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATI--IAITGSVGKTTTK 123
           V+ +     ++ + ++ V    ++     K+A  +A ++   A I  +A+TG+ GKT+  
Sbjct: 64  VIASRYENYNVENCAVLVVREHEI----EKIASMIAKKINEGADIHTVAVTGTNGKTSIS 119

Query: 124 EMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            ++   L ++ ++ A IG+  +  +   P+       DV     ++G      I+ L   
Sbjct: 120 TLVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFE 179

Query: 182 VRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
              H             +A+ T +   HL     ++  A  K+ +F      L +     
Sbjct: 180 ASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGV 239

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---- 280
           LN DDS+++++   S  L  + I    K + ADF     KQ  E    +     KS    
Sbjct: 240 LNKDDSYYKII---SKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGT 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   + IG  M  N+L  L  V +    V+  +  L       GR
Sbjct: 297 FECTTNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGR 342


>gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
 gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
          Length = 485

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 146/378 (38%), Gaps = 45/378 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G++ DSR +AP   F A+ G   DG  FI  A+ +GA  V+  TD   S   + +  
Sbjct: 19  IITGVTSDSRKVAPGALFVALPGTAADGRAFIPQALAQGAAAVLAPTDTPDSAAPVLVTS 78

Query: 86  FGVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTT---------------TKEMLT 127
             V          A+AAR        T +A+TG+ GKT+               +  M T
Sbjct: 79  GDV------RRAYAIAARGFYGAQPRTCVAVTGTNGKTSVAAFCRQIWAGLGHKSASMGT 132

Query: 128 IALSSIK--KTYACIG----SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + +   K  +TYA  G    S +      L       DV     E   SH  + R L   
Sbjct: 133 LGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAKDVTHVAVE-ASSHGIDQRRLDG- 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKS- 239
           V    A  T +   HL     +++  +AK  +FE L   G T  LN D   +    A S 
Sbjct: 191 VALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPRGRTAVLNADSDAYSAFAAASI 250

Query: 240 -HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              LG+  +   G+    D  L   +   E   + + ++G   +++    G   A N L+
Sbjct: 251 MAGLGVMGVGERGR----DLALIGRQATPEGQRLTLDVRGDVRDILLPLAGAFQASNALV 306

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+        D  I AL      +GR +R      +G   +    Y   P  ++   +
Sbjct: 307 AAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRGEVYV---DYAHTPDGLE---T 360

Query: 359 VLSQISPHGEGRRIAVLG 376
           VL+ + PH  GR I V G
Sbjct: 361 VLTALRPHATGRLIVVFG 378


>gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
 gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
          Length = 479

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 45/378 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L Q  Q H+        V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA L
Sbjct: 3   HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+  TD   SI  +   V  V DV  AL +       +    +IA+TG+ GK++    + 
Sbjct: 55  VI--TDNKKSI--VIDKVIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110

Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167
              S + K  A IG+    I         VP       L+  ++  +     +++ +FE 
Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
               L + R     ++ +IA  T+ +  HL      E    AK ++F   L   G   LN
Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    + +K   H   IK I    K    D ++ +     +   +      +       
Sbjct: 229 SDIEEIDFVKDYLHNHNIKFITVGTK---GDLEITRLNGSLKGQNINFTFNNREYNFNTP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L+ +  +  +    D  I +L      +GR +R     N   F      Y
Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338

Query: 347 NANPASMKAAISVLSQIS 364
              P +++  ++ L  I 
Sbjct: 339 AHTPDALEKVLTELKNIK 356


>gi|255975546|ref|ZP_05426132.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256619390|ref|ZP_05476236.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256762846|ref|ZP_05503426.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256853430|ref|ZP_05558800.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|257079296|ref|ZP_05573657.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|257087121|ref|ZP_05581482.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294779802|ref|ZP_06745189.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|255968418|gb|EET99040.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256598917|gb|EEU18093.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256684097|gb|EEU23792.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256711889|gb|EEU26927.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|256987326|gb|EEU74628.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|256995151|gb|EEU82453.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294453176|gb|EFG21591.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|295113194|emb|CBL31831.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus sp. 7L76]
 gi|323481052|gb|ADX80491.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis 62]
          Length = 445

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 255

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 364 -LDLADEVFLCNI 375


>gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI18]
 gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID1]
 gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID24-1]
 gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
          Length = 492

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 142/355 (40%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ ++
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---IINVDDEYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
 gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 492

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           S++AD ++  +   S+         W E + + + +       G   AQN+   + ++  
Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D  +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P
Sbjct: 319 NGYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374

Query: 366 HG 367
            G
Sbjct: 375 QG 376


>gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halanaerobium praevalens DSM 2228]
          Length = 486

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 28/319 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++ I  DSR+I     F AI G   DGH +I  A++ GA  +++  ++      ++ + V
Sbjct: 23  ISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGATAIIIEKELEVYEKDITYLKV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                V+  L K      L+ +  +I ITG+ GKTTT  +L   L       A  G+ +N
Sbjct: 83  ENSRQVMSILAKNFFDNPLK-EIKLIGITGTNGKTTTAYLLYKILQKYAGQAALFGTISN 141

Query: 146 HIG---------VPLTL------ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            IG          P +L      A+M    + +G+ E+  SH  ++ +    +    A+ 
Sbjct: 142 IIGSETLSSNRTTPESLDLYRYFAQMKKKGIKYGVMEVS-SHALDL-YRVESIDFEAAIF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++P HL     ++     K+ +F  L+      +N DD   E +K KS A  +   YS
Sbjct: 200 TNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKYAIINADDPNSEYIKKKSEAQNLS--YS 257

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG--YHMAQNMLMTLGIVSILT 307
              +K+AD    ++K   +Q+ +E +  GK +      +G  +++  ++ + L  + +L 
Sbjct: 258 LD-TKSADLYTTEFKL--KQTGLEYKTGGKLVANFKLNLGGLFNIYNSLAVVLTAL-VLG 313

Query: 308 ADVDTAIKALSVFHPKEGR 326
            + +   KAL+ F    GR
Sbjct: 314 IEKNIIKKALADFDSVPGR 332


>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
 gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
          Length = 485

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 32/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           + G++IDSR I     F A+KG   DGH FI  A++ GA + ++  DM   +      + 
Sbjct: 23  IKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELGA-VAILLEDMPEELNEKVTYVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   ++  G +  +      R K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VASTEEEAGKVATMFYGEPSR-KLKLVGVTGTNGKTTIATLLYRMFREFGHKVGLLSTVC 140

Query: 145 NHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189
           N+I    VP +    P  ++       M   G E  F+   +H +  H          + 
Sbjct: 141 NYINDEEVPASHT-TPDPIELNCLLAKMVEAGCEYAFMECSSHAIHQHRIGGLEFVGGIF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      E   +AK   F+GL KT     N DD    ++   + A    T+ +
Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNADDKNGMIMVQNTKA----TVKT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +   + ADF+ +  +   E  ++EV   GK  EV    IG     N+L   G   +L   
Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEV--DGK--EVGVQFIGKFNVSNLLAVYGAAIMLGKK 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  + A+S      GR +  +    +G+  ++D  Y   P +++  +S +  +     G
Sbjct: 312 PEDVLIAMSTLKSVNGRLEPIQSP--EGYTAVVD--YAHTPDALENVLSAIHDVLDGKGG 367

Query: 370 RRIAVLG 376
             I V G
Sbjct: 368 HVITVCG 374


>gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 165/403 (40%), Gaps = 49/403 (12%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S  +   + F A+ GP  DG  FI  A+ +GA  +V    +    G+ +  V   DD   
Sbjct: 25  SGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGVRLPEGATARLVTH-DDPRQ 83

Query: 94  ALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH----- 146
           AL  LA AA         ++ +TG+ GKTT   +L        +    +G+ +       
Sbjct: 84  ALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTVSYRWPGFS 143

Query: 147 IGVPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           +  PLT          LARM    VD  + E+    L + R     +    AV+T +   
Sbjct: 144 MDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQRVAG--LAYDAAVLTNLTQD 201

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSF-----FELLKAKSHALGIKTIYS 249
           HL     +E    AKA +F  L K G  + +NY+D +      E L A    LG    Y 
Sbjct: 202 HLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAGRSVLG----YG 257

Query: 250 FGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                     +R   +    + +E  V+ +G+  E+V   +G H A N+L  +G+   L 
Sbjct: 258 LETPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFKLG 317

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              ++ ++AL+ F    GR +  R     G    +D ++  +     A ++VLS +   G
Sbjct: 318 LR-ESDMQALAGFTGVSGRLE--RVTNPHGLNVFVDYAHTPD-----ALVNVLSAVKALG 369

Query: 368 EGRRIAVLG-----DMCEMGELSQSF--HIDLAEVLSLYNISH 403
             R + V G     D  +   + Q+   H D+A VL+  N  H
Sbjct: 370 VRRLVCVFGCGGNRDRAKRPLMGQAVCRHADVA-VLTSDNPRH 411


>gi|229545504|ref|ZP_04434229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|307268256|ref|ZP_07549640.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|307275646|ref|ZP_07556787.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|307280524|ref|ZP_07561573.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|307295969|ref|ZP_07575801.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|229309420|gb|EEN75407.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|306496300|gb|EFM65879.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|306504072|gb|EFM73288.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|306507751|gb|EFM76880.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|306515416|gb|EFM83947.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|315025920|gb|EFT37852.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2137]
 gi|315028958|gb|EFT40890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4000]
 gi|315033232|gb|EFT45164.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0017]
 gi|315143492|gb|EFT87508.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2141]
 gi|315147575|gb|EFT91591.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4244]
          Length = 456

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 111 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 266

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 375 -LDLADEVFLCNI 386


>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276]
 gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276s]
 gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9768]
 gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11222]
 gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11074]
 gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9301]
 gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-EC]
 gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-LC]
          Length = 483

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 53/395 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LLQ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA    
Sbjct: 6   LLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121
                +A + SL  P   V  ++ A + +A+ A L ++          +I ITG+ GKTT
Sbjct: 62  -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165
              ++   +    +    IG+  + +G               +    A M   ++   + 
Sbjct: 116 VSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVM 175

Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           E   +GM+ LG +R    L      V+T I   HL     +EE  +AK + F  L + G 
Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGI 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N D  +       S A  +    S+   + AD++  + K  S  S  ++  QG+   
Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFP 286

Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                IG H   N+L +L +V   L  D    ++ +      +G   R    L   F   
Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ID  Y   P ++     +L Q+ P  +GR I V G
Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-DGRLIIVFG 375


>gi|329572871|gb|EGG54496.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1467]
          Length = 379

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 34  ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 84

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 85  FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 137

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 138 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 189

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 190 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 244

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 245 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 297

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 298 -LDLADEVFLCNI 309


>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 490

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 166/402 (41%), Gaps = 63/402 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++      + +PV 
Sbjct: 24  ITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL+ L+ A   +   +  +I ITG+ GKT+T  M+        +    IG+  
Sbjct: 79  IVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMY 138

Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG               +  T  +M  + V+  I E+  SH   LG +    H     
Sbjct: 139 IKIGDETFPVKNTTPESVTLQKTFKKMNDEHVETAIMEVS-SHALSLGRV----HGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236
           IAV T +   HL     +E+   AK+ +F  L      EK     LN DD   ++FE + 
Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFERVT 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +H      I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+
Sbjct: 254 A-AH------ILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNV 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353
           L             DT   AL     +E +G R R  L   NQ F  ++D  Y   P S+
Sbjct: 307 LAAAATAIAAGLPFDTITSAL-----EELQGVRGRFELVNHNQPFPVVVD--YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +   +VL+      EG+   V+G  C  G+  ++    +AE+
Sbjct: 360 E---NVLNTCKDMTEGKLFVVVG--C-GGDRDKTKRPKMAEI 395


>gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 524

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 160/413 (38%), Gaps = 63/413 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +++DSR++ P + F A +G   DG  FI HA+++GA  VV   D  A       P   V 
Sbjct: 35  LAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKTPNLPVP 94

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+      +A  +      K  +I +TG+ GKT+    +  A++++ +  A IG+     
Sbjct: 95  DLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGTLG--- 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP----------------------- 184
                 A  P +++F       S L + +    L R                        
Sbjct: 152 ------AGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATF 205

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +A++T ++  HL     +E  A+AKA +F   GL+      LN DD F   L       
Sbjct: 206 AVAMLTNLSRDHLDYHGTMEVYAAAKARLFHWRGLKYA---VLNLDDVFGMQLLHDLEGT 262

Query: 243 GIKTI-YSFGKS----KNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIGYHMA 293
           G   I Y F        N     R W +    S      +++ +G+ ++     +G   A
Sbjct: 263 GTGMIGYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNA 322

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  L  +         A++AL    P  GR ++      +G   LI   Y   P ++
Sbjct: 323 SNLLGVLATLLASGIAFPEAVRALQKVQPVAGRMQQIG---GEGDEPLIVVDYAHTPDAL 379

Query: 354 KAAISVLSQI--------SPH-GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +  ++ L +          P  G GR + V G  C  GE  Q     + EV +
Sbjct: 380 EKVLTTLREAVDAGFPGGKPETGSGRLVCVFG--C-GGERDQGKRPLMGEVAT 429


>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 483

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 153/370 (41%), Gaps = 40/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           ++G++IDSR I P   F AIKG   DGH++I  A+  GA  V+        +  ++ I V
Sbjct: 23  ISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVAVLCEKAPKEPLSDITYIVV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              +D +G      VA R     +    +I +TG+ GKTT   +L      +      + 
Sbjct: 83  TSTEDAVG-----KVATRFYGDPSKHLKLIGVTGTNGKTTIATLLYNMFRKLGHRCGLLS 137

Query: 142 SYNNHI---GVPLT-LARMPVDVDFGIFELGMSHLGEIRFL---TH-LVRPHI------- 186
           +  N+I    +P       P++++  + ++   H  E  F+   +H + +  I       
Sbjct: 138 TVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHC-EYVFMECSSHAIAQKRIGGLNFTG 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            + T +   HL      E   +AK   F+ L K+     N DD    ++   + A    T
Sbjct: 197 GIFTNLTRDHLDYHKTFENYRNAKKSFFDHLPKSAFAITNADDKNGMVMVQNTKA----T 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++     ADF+ R  +   +  ++E+  Q    EV    IG     N+L       +L
Sbjct: 253 VKTYSVRTAADFKARIIECHFQGMYLEIDGQ----EVGVQFIGKFNVSNLLAVYATARML 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  + A+S  H   GR         QGF  ++D  Y   P ++K  +  + ++   
Sbjct: 309 GKQREEILIAMSTLHSVNGRMDTLHSP--QGFTAVVD--YAHTPDALKNVLLAIHEVD-- 362

Query: 367 GEGRRIAVLG 376
           G+G  I V G
Sbjct: 363 GKGHVITVCG 372


>gi|256964811|ref|ZP_05568982.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
 gi|256955307|gb|EEU71939.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
          Length = 445

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 255

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 364 -LDLADEVFLCNI 375


>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 484

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 144/368 (39%), Gaps = 39/368 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++IDSR I     F A+KG   DGH +I  A++KGA  V V  + +  + +  +    V
Sbjct: 25  GVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGA--VAVLCEDLPEVKAPHVTYIQV 82

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D   A   +A         K  ++ +TG+ GKTT   +L      +      + +  N+
Sbjct: 83  QDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTIATLLYNLFRKLGYKCGLLSTVCNY 142

Query: 147 I---GVPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA--V 188
           I    VP              L+RM     D+   E     + + R    +   H A  +
Sbjct: 143 IEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECSSHAIAQKR----IAGLHFAGGI 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E    AK   F+ L KT     N DD     +   + A    T+ 
Sbjct: 199 FTNLTRDHLDYHKTFENYRDAKKAFFDSLPKTSFAITNADDKNGMYMVQNTKA----TVK 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     ADF+ R  +   E  ++E+       EV    IG     N+L   G   +L  
Sbjct: 255 TYSARSLADFKARIIECHFEGMYLEID----GREVGVRFIGKFNVSNLLAVYGASVMLQQ 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  + ALS      GR +       +GF  ++D  Y   P +++  +  +  +  +G+
Sbjct: 311 QPENILLALSTLQSVSGRLEPIYSP--EGFTCIVD--YAHTPDALENVLLAIHDVL-NGK 365

Query: 369 GRRIAVLG 376
           G+ I V G
Sbjct: 366 GKVITVCG 373


>gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
 gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
          Length = 493

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 165/372 (44%), Gaps = 33/372 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GIS+DSR++ P   F A+ G    G  F+  A+ +GA  V+ + +  A I + ++   
Sbjct: 22  ISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAAVLTDAEG-AQIAAETLAGS 80

Query: 87  GVDDVLGA--LNKLAVAARL---RSKATIIAITGSVGKTTT--------KEM----LTIA 129
            V  V+ A     LA A  L      AT+IA+TG+ GKT+         +EM    + + 
Sbjct: 81  EVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATFVRRLWQEMGFRAVNLG 140

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEIRFLTHLVRPH 185
            + I+  +       +    P+TL +   +    G+    M   SH  + R L   V+  
Sbjct: 141 TTGIEGDWQA--PLRHTTPDPITLHKALAEAALAGVEHAAMEASSHGLDQRRLDG-VQLR 197

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T  +  HL   +  EE  +AKA +F   L + GT  +N DD+    + A + A G 
Sbjct: 198 AAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGIDMLAIAKARGQ 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ + G S+ AD +L   +  +    + +   G   ++  + IG    QN L+  G+V 
Sbjct: 258 ETL-TVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQNALLAAGLVI 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A+ +   +AL       GR  +     + G    +D  +   P ++  AI  L    
Sbjct: 317 ACGAEAEDVFRALPKLDTVRGR-MQLAATRDSGAAVYVD--FAHTPDAVSTAIKAL---R 370

Query: 365 PHGEGRRIAVLG 376
           PH  GR +A++G
Sbjct: 371 PHVMGRLVAIIG 382


>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
 gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
          Length = 484

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 166/394 (42%), Gaps = 50/394 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + ++    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +       G+KT + +F   K +DF+  + K  S  S  +V L+    EV    I  
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE----EVEDFSINI 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCAL-----NQGFFTLI 342
               N+  +LG + I   +++  +  +     KEG        RC L     N  +  +I
Sbjct: 294 PGEYNVYNSLGCI-ICAYNLNIPMNKI-----KEGLSDVVIPGRCELVAKEKNLPYSIII 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  ++   ++LS +      R I+V G
Sbjct: 348 D--YAHTPDGLE---NILSTVKAFTRNRMISVFG 376


>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 481

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 147/373 (39%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V  + IDSR + P   F AIKG   DGH FI  AV +GA  V+  T M A +  G   + 
Sbjct: 23  VTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQGAVAVLCET-MPAELPQGVTFVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  L        K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VESTEDAVGPVATL-FYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVC 140

Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N+I    +P              L RM     ++   E     +    +G + F      
Sbjct: 141 NYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIGGLTFAG---- 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V + +   HL      E   +AK   F+ L K      N DD    ++   + A  
Sbjct: 197 ---GVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNADDKNGMVMVQNTRA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T+ ++     ADF+ +  +   E  ++E+       EV    IG     N+L   G  
Sbjct: 252 --TVKTYSTRSMADFKAKILECHFEGMYLEIN----GAEVGVQFIGKFNVSNLLAVYGTA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  +S  H   GR +  R    +G+  ++D  Y   P +++  ++ + ++
Sbjct: 306 VMLGKRPEDILLVMSTLHSVNGRLEPLRSP--EGYTVIVD--YAHTPDALENVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
             +G+G+ I V G
Sbjct: 362 L-NGKGKVITVCG 373


>gi|257082265|ref|ZP_05576626.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256990295|gb|EEU77597.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 445

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 255

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 364 -LDLADEVFLCNI 375


>gi|29376436|ref|NP_815590.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis V583]
 gi|255972446|ref|ZP_05423032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256959228|ref|ZP_05563399.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256961595|ref|ZP_05565766.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|257084882|ref|ZP_05579243.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|257090198|ref|ZP_05584559.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257416351|ref|ZP_05593345.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|257419600|ref|ZP_05596594.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257422294|ref|ZP_05599284.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300860238|ref|ZP_07106325.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888194|sp|Q833N6|MURC_ENTFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29343900|gb|AAO81660.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis V583]
 gi|255963464|gb|EET95940.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256949724|gb|EEU66356.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256952091|gb|EEU68723.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|256992912|gb|EEU80214.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|256999010|gb|EEU85530.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257158179|gb|EEU88139.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|257161428|gb|EEU91388.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257164118|gb|EEU94078.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300849277|gb|EFK77027.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
          Length = 445

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 255

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 364 -LDLADEVFLCNI 375


>gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus
           ATCC 19977]
 gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium
           abscessus]
          Length = 490

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 135/317 (42%), Gaps = 25/317 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  V A L +    + +TG+ GKT+T  ML +AL        C   Y+    V   L 
Sbjct: 102 LLRPVVLADLMAGYRTLMVTGTHGKTSTTSMLIVALQH------C--GYDPSFAVGGELN 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +   G  ++ ++   E        RP++ ++T I   HL +F  +E  ++   E  
Sbjct: 154 EAGTNAHHGSGDVFVAEADESDGSLLQYRPNLIIVTNIEADHLDHFGSVEAYSAVFDEFA 213

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------QLRKWKQCS 267
           E L   G + +  DD     L  ++H  GI+ +  +G +  A+        QLR W+   
Sbjct: 214 ETLGSEGVLVVCLDDPGAAALARRAHERGIR-VRGYGSADQAEAGDVPVAGQLRDWQFKD 272

Query: 268 EQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +  ++QL G+S          G HMA N L  +   + + A VD  +  L+ F   EG
Sbjct: 273 TGATAQIQLAGESAPRTMRLSVPGRHMALNALAAVVTAAEIGAAVDDVLDGLAGF---EG 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGEL 384
             +R+    +     + D+ Y  +P  ++  +  +S I +  G GR + V      +   
Sbjct: 330 VRRRFELVGSVESVRVFDD-YAHHPTEVRTVLQAVSGIVAQQGFGRSVVVF--QPHLYSR 386

Query: 385 SQSFHIDLAEVLSLYNI 401
           + +F  + A+ LS+ ++
Sbjct: 387 TAAFATEFADALSIADL 403


>gi|307272893|ref|ZP_07554140.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
 gi|306510507|gb|EFM79530.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
          Length = 456

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 111 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 266

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 375 -LDLADEVFLCNI 386


>gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 575

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 19  IGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           +G  PQ  G V GI+ DSR++ P + + A+ G  + G DF   A   GA  ++ +     
Sbjct: 73  LGAGPQDAGEVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAAILTDPAGAE 132

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134
              +  +PV   DD  G +  LA     R    +  I ITG+ GKTTT  ++   L    
Sbjct: 133 RAAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTAYLVEGGLRGAG 192

Query: 135 KTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------- 185
           ++   IG+    IG     +    P   D       M   G +  +   V  H       
Sbjct: 193 RSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRV 251

Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 +AV   ++P H+   SG+E+   AKA++F   E++    +N+DD +   L  ++
Sbjct: 252 DGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFT-PERSKLGVVNFDDEYGRRLVDEA 310

Query: 240 HALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                  + +F    + D + R         + ++  +  +G+ +       G     N 
Sbjct: 311 SV----PVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAPLPGPFNVANT 366

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    IV++  A +D  I A  V       G+  R    Q +  ++D ++  +     A 
Sbjct: 367 LAA--IVTLAVAGIDPQIAADGVAGVPGVPGRLERIDAGQPYLAVVDYAHKTD-----AV 419

Query: 357 ISVLSQISPHGEGRRIAVLG 376
            SVL  +    EGR   VLG
Sbjct: 420 ESVLRSLRKVTEGRVHIVLG 439


>gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae MS11]
 gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
          Length = 492

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 142/355 (40%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ ++
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|227519254|ref|ZP_03949303.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227555538|ref|ZP_03985585.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229549750|ref|ZP_04438475.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|293382403|ref|ZP_06628340.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|293388252|ref|ZP_06632768.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|307287939|ref|ZP_07567972.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|312900938|ref|ZP_07760232.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|312902694|ref|ZP_07761898.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|312908370|ref|ZP_07767334.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|312910557|ref|ZP_07769399.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|312950943|ref|ZP_07769853.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|227073266|gb|EEI11229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227175343|gb|EEI56315.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229305019|gb|EEN71015.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|291080179|gb|EFE17543.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|291082334|gb|EFE19297.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|306501084|gb|EFM70391.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|310625784|gb|EFQ09067.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|310631092|gb|EFQ14375.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|310633748|gb|EFQ17031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|311289105|gb|EFQ67661.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|311292037|gb|EFQ70593.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|315036717|gb|EFT48649.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0027]
 gi|315149313|gb|EFT93329.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0012]
 gi|315152214|gb|EFT96230.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0031]
 gi|315157019|gb|EFU01036.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0043]
 gi|315159827|gb|EFU03844.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0312]
 gi|315161519|gb|EFU05536.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0645]
 gi|315163609|gb|EFU07626.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1302]
 gi|315167362|gb|EFU11379.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1341]
 gi|315169555|gb|EFU13572.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1342]
 gi|315574498|gb|EFU86689.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309B]
 gi|315576957|gb|EFU89148.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0630]
 gi|315581840|gb|EFU94031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309A]
 gi|327535426|gb|AEA94260.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 111 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 266

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 375 -LDLADEVFLCNI 386


>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 484

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + V+    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289
              +       G+KT + +F   K +DF+  + K  S  S  +V L+  S+E     I G
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            +   N L  +     L   +D   + LS V  P  GR +      N  +  +ID  Y  
Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P  ++   ++LS +    + R I+V G
Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376


>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 486

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 23  PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G   ++G+S DSR +AP   F A+ G   DG  FI+ A  +GA + + +  + A    
Sbjct: 21  PAGLLDISGLSSDSRKVAPGNVFVAVAGTKADGAGFIVDAAGRGAAVAIASQAIDA---- 76

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134
            SIPVF V +    L+  A     +   T++A+TG+ GKT+    T+++   A   +++ 
Sbjct: 77  -SIPVFAVKEPRRFLSIAAARFHGKQPDTMVAVTGTAGKTSVASFTRQIWAYAGHTAAMI 135

Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
            T   +    N  G      P++L ++  +     V     E     L + R     VR 
Sbjct: 136 GTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAGEGVTHAAMEASSHGLDQCRL--DGVRL 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A  T +   H+     +E   +AK  +F+ L   G+  + + D  +     K+     
Sbjct: 194 AAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLPKGSPAVIFADDPWSAQAIKAATDAG 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I + G+ K     L++ +    +   E+ + G+  EV     G     N L+  G+  
Sbjct: 254 HDIRTVGR-KGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDIPLAGDFQVANALVAAGLAM 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +   A+ AL       GR          G    +D  Y   P +++   +VL  + 
Sbjct: 313 STGVEAKVAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLGSVR 366

Query: 365 PHGEGRRIAVLG 376
           P   GR I V G
Sbjct: 367 PFTTGRVIVVFG 378


>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
 gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
          Length = 483

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 147/373 (39%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIP 84
           + G++IDSR I     F A+KG   DGH FI  A++ GA + V+  D+  V   G   + 
Sbjct: 23  ITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIELGA-ISVLCEDLPEVLQEGITYVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  L        K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VESTEDAVGKVATL-FYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVC 140

Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELG-----MSHLGEIRFLTHLVR 183
           N+I    VP              LA+M     ++   E          +G ++F      
Sbjct: 141 NYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGLKFAG---- 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ T +   HL      E   +AK   F+GL K      N DD    ++   + A  
Sbjct: 197 ---ALFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDKNGMIMVQNTKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T+ ++     ADF+ R  +   E  ++E+       EV    IG     N+L   G  
Sbjct: 252 --TVKTYSIRTLADFRARILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGAA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  LS  H   GR +       +GF  ++D  Y   P ++   ++ + ++
Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHSP--EGFTAIVD--YAHTPDALANVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
              G+G  I V G
Sbjct: 362 LD-GKGHVITVCG 373


>gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           ST-640]
 gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           020-06]
          Length = 492

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 139/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEQADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L    P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 501

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 152/377 (40%), Gaps = 37/377 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G      +  IS+ S+ I     F A KG   DGH+FI +A+Q GA  +V   + + S 
Sbjct: 18  VGKNTSKLIERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGAHTIVC--EKIPSS 75

Query: 79  GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML---------- 126
               I    V D + AL  ++         K  +I ITG+ GKT+   +L          
Sbjct: 76  IHKKITYVLVPDSMNALGIISSNFYDHPTKKIKLIGITGTNGKTSVATILHQLFSKMGEK 135

Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTH 180
                T+ +  + K Y    +  N I +   L   +     +   E+    + + R    
Sbjct: 136 NILISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEVSSHGIHQKRIAGL 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKS 239
           L +    V T I   HL      +   S K   FE L K     +N DD + ++++K   
Sbjct: 196 LFQG--GVFTNITHDHLDYHESFDHYLSTKKFFFENLSKKAFALINSDDENSYKIIKD-- 251

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   Y +G  KNA+F++    Q  ++S    QL     ++    IG     N+L  
Sbjct: 252 ---ILSKTYFYGLKKNANFKI----QILKESIHGSQLLIDGHKIFTKLIGTFNVYNLLAG 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +L    D  +K +    P  GR +++    N G   ++D  Y  NP  +K  ++ 
Sbjct: 305 YATAILLGKKKDNILKKIKNIKPIRGRFEQF--ISNSGIRVIVD--YAHNPDGLKTVLNT 360

Query: 360 LSQISPHGEGRRIAVLG 376
           L +I  + +G+ I V+G
Sbjct: 361 LKKIK-NDDGKLICVIG 376


>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 483

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 53/395 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LLQ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA    
Sbjct: 6   LLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121
                +A + SL  P   V  ++ A + +A+ A L ++          +I ITG+ GKTT
Sbjct: 62  -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165
              ++   +    +    IG+  + +G               +    A M   ++   + 
Sbjct: 116 VSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVM 175

Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           E   +GM+ LG +R    L      V+T I   HL     +EE  +AK + F  L + G 
Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNIISDHLDFHGSLEEYIAAKKQFFASLPEKGI 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N D  +       S A  +    S+   + AD++  + K  S  S  ++  QG+   
Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFP 286

Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                IG H   N+L +L +V   L  D    ++ +      +G   R    L   F   
Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ID  Y   P ++     +L Q+ P  +GR I V G
Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-DGRLIIVFG 375


>gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
 gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
          Length = 500

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 157/386 (40%), Gaps = 44/386 (11%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           GI  +  +  I+ DSR  +    F A++G   DGH+FI  AV  G+  VV   + +    
Sbjct: 19  GIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDAVSLGSKAVVC--EELPETP 76

Query: 80  SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +  +    V D   A+ ++A A    +  + +II +TG+ GKTTT  ++   ++      
Sbjct: 77  AERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNGKTTTARLMAGMMNDC---- 132

Query: 138 ACIGSYNNHIGVPLTLA--------RMPVDVD--FGIFELGMSHLGEIRFLTHLVRPHI- 186
              G    +IG  L LA        R   + +    +F + M+  G  R +   V  H  
Sbjct: 133 ---GIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSI-MAERG-CRAVVMEVSSHAL 187

Query: 187 ------------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SF 231
                       AV T +   HL     +E  ASAK  +F  +   G + +N DD    F
Sbjct: 188 VLQRTFGIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSPEGFVVVNADDPRAGF 247

Query: 232 FELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               + KS         S +  S+   F     +   + + + +   G+  +V+    G 
Sbjct: 248 MAENRGKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDADGRGYDVLFRLTGL 307

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L        L  + +  +++LS   P EGR +  R A    FF ++D  Y   P
Sbjct: 308 FNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGD-FFAVVD--YAHTP 364

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++  I  L+++ P  EG  I V G
Sbjct: 365 DALEKVIGTLNELKPE-EGELIVVFG 389


>gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 492

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 141/362 (38%), Gaps = 41/362 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   +      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLTLAR----MPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188
            L  A      PVDV   ++                  L  S +  + F +       A+
Sbjct: 149 ALEEATHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245
            T +   HL     +E   + K+ +F   GL+      +N DD +  EL+          
Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDEYGAELVGRLKKDCPDL 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +Y +G S+ AD ++  +   S+      Q      +     +G   AQN+   + ++  
Sbjct: 259 AVYGYGFSEQADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++  ++ L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P
Sbjct: 319 NGYPLNNVLEVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374

Query: 366 HG 367
            G
Sbjct: 375 QG 376


>gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis 961-5945]
 gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis G2136]
          Length = 492

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis 053442]
 gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           053442]
          Length = 492

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 43/370 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFG 87
           ++ DSR + P   FFA++G   DGHD+   AV++GA  VVV    D+   I  +      
Sbjct: 25  LAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVERGAVAVVVEQPVDLPDEIVQVV----- 79

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           VDD   A+ + A            I+ +TG+ GKTT   +L   L     T A +G+ +N
Sbjct: 80  VDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKTTMTYLLESVLKQAGYTPAVVGTISN 139

Query: 146 HIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +G          P  L L R+  +      D  + E+    L + R +       +AV 
Sbjct: 140 RMGDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHALMQSRVVGLTF--DVAVF 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDSF-FELLKAKSHALGIKT 246
           T + P HL     +E   +AK  +F+  +  G  T  +N DD +  +L++  +  L    
Sbjct: 198 TNLTPEHLDYHKNMESYFAAKTRLFKEPQIYGDFTAVVNTDDPYGAKLVRELNEPL---- 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S G  + AD ++   +Q  + +   ++     + V    +G    +N+L  +G   +L
Sbjct: 254 --SVGMHRGADVRVCDVEQTMQGTVATLETPQGEITVRSPLVGPFNLENLLCAVGAGLVL 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              + T  + L+  +   GR +     L  G   ++D ++  +  ++  A+  ++ + P 
Sbjct: 312 DLPITTIEQGLAAANRVPGRLEPVDNTL--GALIVVDYAHTGD--ALAKALEAMAALKPQ 367

Query: 367 GEGRRIAVLG 376
              R I V G
Sbjct: 368 ---RIITVFG 374


>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70]
 gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70s]
 gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis Sweden2]
 gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/150]
 gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/11023]
          Length = 483

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 53/395 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA    
Sbjct: 6   LLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121
                +A + SL  P   V  ++ A + +A+ A L ++          +I ITG+ GKTT
Sbjct: 62  -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165
              ++   +    +    IG+  + +G               +    A M   ++   + 
Sbjct: 116 VSCLVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVM 175

Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           E   +GM+ LG +R    L      V+T I   HL     +EE  +AK + F  L + G 
Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGI 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N D  +       S A  +    S+   + AD++  + K  S  S  ++  QGK   
Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFL 286

Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                IG H   N+L +L +V   L  D    ++ +      +G   R    L   F   
Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ID  Y   P ++     +L Q+ P  +GR I V G
Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-DGRLIIVFG 375


>gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
 gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
          Length = 492

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
 gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
          Length = 485

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 148/384 (38%), Gaps = 30/384 (7%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL  ++  SI       + G++IDSR I     F AIKG   DGH FI  A++ GA  +
Sbjct: 5   DLLSEVKTLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFINKAIESGAKAI 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
           ++    V S     I    V+     + K+A         K  ++ +TG+ GKTT   +L
Sbjct: 65  LLED--VPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLVGVTGTNGKTTIATLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG-EIRFL---TH 180
                +       + +  N+I      T    P  ++       M   G E  F+   +H
Sbjct: 123 YNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKMVEAGCEYAFMECSSH 182

Query: 181 LVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +  H          + T +   HL      E   +AK   F+ L K      N DD   
Sbjct: 183 AIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSLPKKAFAITNADDKNG 242

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            ++     A     I ++   + ADF+ R  +   E  ++++   GK  EV    IG   
Sbjct: 243 MIMVQNCKA----NIKTYSIQRMADFRARIIECHFEGMYLDI--DGK--EVGVQFIGKFN 294

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L   G   +L    D  +  LS      GR +  R    +GF  ++D  Y   P +
Sbjct: 295 VSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIRSP--EGFTAIVD--YAHTPDA 350

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +   +S +  +     G+ I V G
Sbjct: 351 LSNVLSAIHDVMEGKTGQIITVCG 374


>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
 gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
          Length = 484

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + ++    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289
              +       G+KT + +F   K +DF+  + K  S  S  +V L+  S+E     I G
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            +   N L  +     L   +D   + LS V  P  GR +      N  +  +ID  Y  
Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P  ++   ++LS +    + R I+V G
Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376


>gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
 gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
          Length = 487

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 165/376 (43%), Gaps = 45/376 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G +ID R +AP   F A +G  ++G DFI  AV       +V+   VA   ++   V 
Sbjct: 23  ITGFAIDHRKVAPGTVFGAFRGSRFNGEDFIAQAVAD-GAAAIVSAPGVAVGSAIGGAVH 81

Query: 87  GVDDVLGALNKLAVAARLRSK------ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC- 139
            VDD         + ARL ++       T +A+TG+ GKT+T E LT  L  +   +A  
Sbjct: 82  IVDD-----EPRRLFARLAARFFAPFPDTTVAVTGTNGKTSTVE-LTRQLWRMAGFHAAS 135

Query: 140 -----IGSYNNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLV 182
                + + +  +   LT    P  V F     G+ + G++H        G  ++ T  +
Sbjct: 136 IGTLGVTTADEQVSTGLT---TPDIVTFLSNMAGLRKEGVTHAAFEASSHGLSQYRTEGL 192

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHA 241
               A  T ++  HL     +E   +AK  +F E +++ G   +  DD     + A   A
Sbjct: 193 PVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVDQDGAAVVWADDPRSVEVIAAVRA 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ + S G +     +L +    +    ++++++GK+ EV    IG + A N L+  G
Sbjct: 253 RGVR-LLSVGAAGET-IRLVERTPTALGQTLKLEIEGKAREVKLPLIGAYQAANALVAAG 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL 360
           +V     ++   +  L    P   RG+  R A+++ G    +D  Y   P  ++AAI  L
Sbjct: 311 LVVATGGEIGLTLANLQRVAPV--RGRLERAAISRTGAPIYVD--YAHTPDGLEAAIEAL 366

Query: 361 SQISPHGEGRRIAVLG 376
               PH E R I V G
Sbjct: 367 ---RPHTEARLITVFG 379


>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 484

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + V+    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289
              +       G+KT + +F   K +DF+  + K  S  S  +V L+  S+E     I G
Sbjct: 238 GANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            +   N L  +     L   +D   + LS V  P  GR +      N  +  +ID  Y  
Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P  ++   ++LS +    + R I+V G
Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376


>gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M01-240355]
          Length = 492

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis N1568]
          Length = 492

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVCRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae NCCP11945]
 gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
          Length = 492

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ ++
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
 gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 147/361 (40%), Gaps = 34/361 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           ARL  +   IA+ G+ GKTTT  M  + L           S++  I +   L+ +  +  
Sbjct: 103 ARLMKEKKGIAVAGAHGKTTTTSMTALILEE--------NSFDPTIIIGGDLSNIGGNAK 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G  E  ++   E      L+ P+IAV+T I   HL  +   E IA A  +    L   G
Sbjct: 155 LGQGEYMVAEADESDGSFLLLDPNIAVVTNIEDDHLDYYGTRENIAKAFRQFLAKLSAEG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD    +LK  +  L  + +        AD+Q++  +  +  +  EV  Q + +
Sbjct: 215 LAVICLDDP---VLKEITTGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEVYFQEERL 271

Query: 282 EVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++  H  GYH   N +  + I   L  D +   +AL  F    G  +R++        T
Sbjct: 272 GMLELHVPGYHNLLNAMAAVAIGRHLNLDFEKIARALRKF---TGAKRRFQVIGKVNGIT 328

Query: 341 LIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HI 390
           ++D+ Y  +P  +KA +          +++   PH   R   +        E  QSF + 
Sbjct: 329 VVDD-YAHHPTEVKATLQAARTSHPGRIVTIFQPHRYSRTKQLF------KEFGQSFTNG 381

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           DL  +  +Y  S + L G H   + DA+P      V Y  T+     ++      GD+V+
Sbjct: 382 DLIILTDIYAASELPLEGVHTKLILDAIPLQEGQQVLYLPTLKDAADYLADYANPGDLVL 441

Query: 449 V 449
            
Sbjct: 442 T 442


>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
 gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
          Length = 483

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 148/373 (39%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIP 84
           + G++IDSR IA    F A+KG   DGH FI  A+++GA  ++   DM  +   G   + 
Sbjct: 23  IKGVNIDSRKIAEGHLFIAMKGTQVDGHRFIPKAIEQGAKAILCE-DMPEMKVEGVTYVK 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D  G +  L      + K  ++ +TG+ GKTT   +L      +      + +  
Sbjct: 82  VESTEDAAGKVATLFYGDPSK-KLKLVGVTGTNGKTTVATLLYNMFRKMGYKCGLLSTVC 140

Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+I    +P              L RM     ++   E     + + R     ++    +
Sbjct: 141 NYIEDEAIPADHTTPDPIELNELLGRMVNTGCEYAFMECSSHAIAQKRISG--LKFTGGL 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   +AK   F+ L K      N DD    ++   + A    T+ 
Sbjct: 199 FTNLTRDHLDYHKTFENYRNAKKAFFDELPKGAFAITNADDKNGMIMVQNTKA----TVK 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLMTLGIV 303
           ++     ADF+ R          +E   +G  +++  H +G          N+L   G  
Sbjct: 255 TYSTRSAADFKAR---------ILECHFEGMYLDIDGHEVGVQFIGKFNVSNLLTVYGAA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  +S  H   GR +       +G+  ++D  Y   P +++  +  + ++
Sbjct: 306 RMLGKQPEDILLVMSTLHSVSGRLEPIHSP--EGYTAIVD--YAHTPDALENVLKAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
             +G+G+ I V G
Sbjct: 362 L-NGKGKLITVCG 373


>gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 464

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 140/310 (45%), Gaps = 14/310 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+AITG+ GKTTTKEM+   LS+ +K  A   S N+       L  +  D +  +FE  +
Sbjct: 105 IVAITGTSGKTTTKEMIKHILSADRKVTATTLSSNSRTASLQYLLGIEDDTEAAVFETAV 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              G++       +P I +IT I   HL+    +E    AK E+ + +   GT+ +N +D
Sbjct: 165 GSPGDVTNAGRYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGTLIINAED 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              + +   S   G   +   GK  + DF+        +     +    KS +++  G G
Sbjct: 225 MNTKKIDV-SRFRG--RLIKVGKHDSCDFRASHIHYYQKGMKFILHHDRKSYDILVPGFG 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYN 347
            H   N L  +  V  +   +  A K L  F     R  + +  L +G     L+D++++
Sbjct: 282 EHQVYNALAAIAAVHDMGMPIPVAAKQLQSF-----RLLKKQLQLFEGINHSMLLDDTWS 336

Query: 348 ANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
               S++AA+ VL+++   G+G ++IAV+G + ++G      H    E++    +  +  
Sbjct: 337 ITTTSLEAALKVLNEL---GDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLIT 393

Query: 407 SGFHVLALKD 416
            G H   + D
Sbjct: 394 IGEHARIMAD 403


>gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M0579]
 gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240149]
 gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 142/357 (39%), Gaps = 31/357 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310
           S++AD ++  +   S+   +E   Q    E   H   +G   AQN+   + ++      +
Sbjct: 266 SEHADIRITDFTASSDG--IEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           D  +  L    P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
 gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
          Length = 496

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 151/383 (39%), Gaps = 46/383 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-------MVASIG 79
           +N +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       +     
Sbjct: 20  LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFA 79

Query: 80  SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           + +  V  V ++   L+ +A A       K T++ ITG+ GKTTT ++     + +    
Sbjct: 80  NSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKS 139

Query: 138 ACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL 181
           A +G+  N +           G  + + R   D      DF   E+    L + R     
Sbjct: 140 AVMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYR--AEA 197

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSH 240
           +   +A+ T ++  HL   + +EE A AK  +F  L     + +N DD    E L     
Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV-INADDEIGREWLAKLPE 256

Query: 241 ALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           A+ + T   F        K+K   F L+      E SW   +L+ +        IG    
Sbjct: 257 AVAVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRL-------IGAFNV 309

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L     +  L  D+   I+   + +   GR +      N     ++   Y   P ++
Sbjct: 310 SNLLTAFAGLLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDAL 369

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           + A   L     H EG    V G
Sbjct: 370 EKA---LDAARLHCEGELWCVFG 389


>gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 484

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 149/377 (39%), Gaps = 48/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR + P   F A+KG   DG  ++  A+Q+GA +++ + + V    +LSIPV 
Sbjct: 21  ITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLSIPVI 78

Query: 87  GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V DV    +KLA+AA         T++A+TG+ GKT+    +      I    A IG+ 
Sbjct: 79  HVLDV---RHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGTV 135

Query: 144 ------NNHIGV-----PLTLARMPVDV--DFGI----FELGMSHLGEIRFL-THLVRPH 185
                  + IG      P+ L R+  ++  D G+    FE     L + R    HL    
Sbjct: 136 GVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLA--- 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKS 239
            A  T +   H+     IE    AK  +F  L       L + D  +       + +A  
Sbjct: 193 AAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHR 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L I     F      + Q  + KQC E   M   +    + +     G     N LM 
Sbjct: 253 QVLTIGRTGKFITLNRVEHQ--RLKQCVE-CRMGNNIYTFDLPLA----GDFQVTNALMA 305

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+     A  D   ++L       GR +        G    +D  Y   P +++    V
Sbjct: 306 AGLAIATNAPPDMVFRSLEKLQGAPGRLELV-GNTEDGAPVYVD--YAHKPEALE---QV 359

Query: 360 LSQISPHGEGRRIAVLG 376
           L  + P  +GR I V G
Sbjct: 360 LLSVRPFTQGRLILVFG 376


>gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 143/357 (40%), Gaps = 31/357 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310
           S++AD ++  +   S+   +E   +    E   H   +G   AQN+   + ++      +
Sbjct: 266 SEHADIRITDFTASSDG--IEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           D  +  L    P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
 gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   +     ++P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDSLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 TLEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +Y +G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDEYGAELAGRLKKDCPDLAVYGYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ AD ++  +   S+      Q      +     +G   AQN+   + ++      ++ 
Sbjct: 266 SEQADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++ L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLEVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
 gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
          Length = 502

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 173/383 (45%), Gaps = 51/383 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIG 79
           ++G+++DSR++ P   F A++G  + G +F   A+ +GA  ++        +  + A   
Sbjct: 28  IHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAAAILWQPTPGFDDQALSARCA 87

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
             ++P   V  +   +    +AAR      +  T+I +TG+ GKT+  + +  AL   +K
Sbjct: 88  KQAVPCIAVHSLHAQVG--IIAARFYGDPGANMTVIGVTGTDGKTSVSQFIAHALG--RK 143

Query: 136 TYAC--IGSYNNHIGVPLTLARM-------PVDVDFGIFELGMSHLGE--IRFLTHLVRP 184
            Y C  +G+     G+P  L R+       P+ +   + +L   H     I   +H +  
Sbjct: 144 EYRCGILGTLG--CGLPGHLRRVTSLTTPDPITLQCELNQLRARHAQAVVIEVSSHALDQ 201

Query: 185 H--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                    +AV+T ++  HL         A AKA +F+  E   T+ +N DD F   L+
Sbjct: 202 QRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQRPE-LHTVVVNVDDDFGRSLR 260

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG-IGYHMA 293
           A   HA  I   YS    + A  QLR  +  ++   + + L  G     V  G +G   A
Sbjct: 261 ASVRHARVIG--YSLAGIETA--QLRCLRLAAQSDGLRLLLDAGGCRAAVRVGLLGRFNA 316

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  LG +  L   +  A++ LS+  P  GR +RY    ++G  T++ + Y   PA +
Sbjct: 317 ANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYG---SEGRPTVVID-YAHTPAGL 372

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           +AA++ + +   H  GR   V G
Sbjct: 373 QAALAAMRE---HFAGRIWCVFG 392


>gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis OX99.30304]
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 506

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           ++ ++ DSR +    AF  I G  +DGH F+  A++ GA ++   +  V        P  
Sbjct: 24  ISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGAAVLAGESAEVLEKAGRKYPDR 83

Query: 85  -VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT----TKEMLTI---ALSSIK 134
               V+D    L +L++    R     T I +TG+ GKTT     K +LT+      SI 
Sbjct: 84  TFILVEDARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPTGSIG 143

Query: 135 KT--YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRP 184
            T   +  G+ N     P T     +   F  F+        + +S +  ++     +  
Sbjct: 144 TTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVEGIEF 203

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+ T ++P HL      E    AK ++F+  +K     +N DDS       K H+  +
Sbjct: 204 DIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQAKKA---VVNIDDSGMAKDILKIHSGDV 260

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            T YS  K  +AD +    +    +++ E++ Q +S  V    IG +   N+L
Sbjct: 261 LT-YSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANIL 312


>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
           Full=UDP-MurNAc-tripeptide synthetase 2
 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 163/387 (42%), Gaps = 46/387 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             IG +P   ++ IS +SR +     F  I G   DGH+F+  AV+ GA  +V   ++  
Sbjct: 14  QQIGKLPNT-ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNL 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                ++ +  V D   A+  LA           TI  +TG+ GKTT   ++   L+  +
Sbjct: 73  DTNKATLII--VPDTNKAIATLAATFYKHPSHNLTIYGVTGTNGKTTVTTIINHLLTDNE 130

Query: 135 KTYACIG------------SYNNHIGVPLTLARMPVDV-DFGIFELGM---SH-LGEIRF 177
            + A IG            S NN     LT   M  +  + G+  + M   SH L + R 
Sbjct: 131 LSTALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAKNQGVTHVAMEVSSHGLEQGRL 190

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFE 233
               +   +A  T ++  HL     +EE A+ K ++F  L     K     LN DD+++E
Sbjct: 191 WG--IDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIAVLNRDDNWYE 248

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             + ++       I S+G  + ADF+    K   +++  E+     S +V    +G    
Sbjct: 249 YFQKRTPV----QIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQTKLMGEFNV 304

Query: 294 QNMLMTLGIV----SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            N+L  +  V    SI   D+   +K++       GR ++   + N+  +  ID  Y   
Sbjct: 305 YNVLAAIASVYVKESIPLTDL---VKSIEGTPTPPGRMEKLESSGNRHIY--ID--YAHT 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P ++  AI+ L    P  + + I V+G
Sbjct: 358 PDALTKAINSL---LPFKQNKLIVVVG 381


>gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
          Length = 492

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 139/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +    IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +Y +G 
Sbjct: 209 HLDYHGTMEAYGTIKSRLFYWHGLKHA---IINVDDEYGAELIGRLKKDCPDLAVYGYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q            +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M6190]
 gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis ES14902]
          Length = 492

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|315174254|gb|EFU18271.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1346]
          Length = 456

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR     T IA+TGS GKT+T  +L   LS I  T   IG    H G P        D D
Sbjct: 111 ARFIELYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F  FE          +  H +   P  A++T I   H   +  IE++ SA   +   ++K
Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +  
Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 266

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V    G+H   N L  + +      D+    + +  F     +G + R +  +  
Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +I + Y  +PA +KA I           +++   PH   R IA++ +  E        
Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374

Query: 389 HIDLAEVLSLYNI 401
            +DLA+ + L NI
Sbjct: 375 -LDLADEVFLCNI 386


>gi|242309201|ref|ZP_04808356.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
 gi|239524242|gb|EEQ64108.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
          Length = 489

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 126/310 (40%), Gaps = 65/310 (20%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------PLTLARMPVD 159
           TIIA+TGS GKT+ K  L   L    K YA   S N   G+         PLT       
Sbjct: 163 TIIAVTGSYGKTSLKNFLIQVLQDDFKVYATPRSINTLTGIIADINQNLSPLT------- 215

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--L 217
            D  I E G   +G+I+ +  L++P IAV+  I PAH+  F  +E I   K EI +   L
Sbjct: 216 -DIYIVEAGARGVGDIKEIVELIKPQIAVVGKIGPAHIEYFKTMENIYQVKYEILQSDRL 274

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-- 275
           E+       Y ++       K  A             N +FQ +    C  Q+  E+   
Sbjct: 275 ERAYI----YKEN------TKPEAF------------NIEFQGK--VICFPQNISEINAD 310

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---------LTADVDTAIKALSVFHPKEGR 326
           L+G S  +  +G    +   +L    +++I         L    +  IK +        R
Sbjct: 311 LEGTSFVLTENGEKIQLETKVLGAFNVINISAAIAVAKDLGVSKNQIIKQVQKLERVNHR 370

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               +  +N     ++D+SYN N   M  AI    +++    GR++ V   + E    S+
Sbjct: 371 LS--KIVVNDK--IILDDSYNGNLEGMLEAI----RLASLHTGRKVIVTPGLVES---SK 419

Query: 387 SFHIDLAEVL 396
             ++DLA  +
Sbjct: 420 EANVDLARAI 429


>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
 gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
          Length = 485

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 150/385 (38%), Gaps = 32/385 (8%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+ ++  +I       + GI+IDSR I     F A+KG   DGH FI  A++ GA  V
Sbjct: 5   DLLKGVKTLNINGNADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELGAKAV 64

Query: 69  VVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +V    TD+   +    + V   +  +G +  +      + K  ++ +TG+ GKTT   +
Sbjct: 65  LVEDMPTDLKEDV--TYVQVASTETEVGKIATIFYGNPTK-KLKLVGVTGTNGKTTIATL 121

Query: 126 LTIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---T 179
           L             I +  N+I      T    P  ++       M   G E  F+   +
Sbjct: 122 LYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFMECSS 181

Query: 180 HLVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H +  H          V T +   HL      E   +AK   F+ L K      N DD  
Sbjct: 182 HAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSLSKNAFAITNADDKN 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             ++     A     I ++   + ADF+ +  +   E  ++EV   GK  EV    IG  
Sbjct: 242 GMIMVQNCKA----NIKTYSMQRMADFRAKIIECHFEGMYLEV--DGK--EVGVQFIGKF 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L   G   +L    D  + ALS      GR         +GF  ++D  Y   P 
Sbjct: 294 NVSNLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSP--EGFTAIVD--YAHTPD 349

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           +++  +  +  +     G+ I V G
Sbjct: 350 ALENVLGAIHDVLEGKNGKVITVCG 374


>gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 493

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 157/371 (42%), Gaps = 36/371 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL------VVVNTDMVASIGS 80
           + G++ DSR++AP   F A+ G   DG  FI  A+  GA          +  D  A++ +
Sbjct: 30  IAGLTADSRAVAPGWLFAALPGVKADGRAFIPAALAAGASAVLAPEGTALPPDAPAALVT 89

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            + P         A  ++A A      AT++A+TG+ GKT++          + +T A +
Sbjct: 90  AANP-------RQAFARMAAAFAGAQPATVVAVTGTNGKTSSVSFTRQIWDRLGRTAASL 142

Query: 141 GSYNNHIGV-----------PLTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHI 186
           G+     GV           P++L +M  ++ + G+  L M  S  G  ++    VR   
Sbjct: 143 GTLGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDALAMEASSHGLDQYRLDGVRLSA 202

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T +   HL     ++   +AKA +F E L + G   LN DD  F  L A     G +
Sbjct: 203 AAFTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAVLNADDPAFPTLAALCRDRG-Q 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++  +G+S     +L      +    ++++L G+   V+   +G   A N+L  LG+   
Sbjct: 262 SVLDYGRSAKT-LRLAGVSAKAHGQSLDLELFGRHHSVLLPLVGDFQAMNVLCALGLAIA 320

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A VD A+  L+     EG   R      +     +   Y   P  +   ++ L  + P
Sbjct: 321 TGAPVDAAVATLASL---EGVPGRLEMVARRASGAPVYVDYAHTPDGL---VTALRALRP 374

Query: 366 HGEGRRIAVLG 376
           H  G+ + V G
Sbjct: 375 HCRGKLVCVFG 385


>gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha153]
          Length = 492

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 139/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 492

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 141/369 (38%), Gaps = 55/369 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188
            L         PVDV   ++                  L  S +  + F +       A+
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245
            T +   HL     +E   + K+ +F   GL+      +N DD +  EL+          
Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---VINVDDEYGAELVGRLKKDCPDL 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +YS+G S+ AD ++  +   S+         W E + + + +       G   AQN+  
Sbjct: 259 VVYSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAA 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + ++      +D  +  L    P  G   R  C +N G   L+   Y   P +++ A++
Sbjct: 312 CIALLCANGYPLDKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALA 367

Query: 359 VLSQISPHG 367
            L +I P G
Sbjct: 368 TLQEIKPQG 376


>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
          Length = 484

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + ++    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289
              +       G+KT + +F   K +DF+  + K  S  S  +V L+  S+E     I G
Sbjct: 238 GANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            +   N L  +     L   +D   + LS V  P  GR +      N  +  +ID  Y  
Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P  ++   ++LS +    + R I+V G
Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376


>gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha275]
          Length = 492

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELVGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 492

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 130/327 (39%), Gaps = 41/327 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ D+R + P   F  I G   DGH+    AVQKGA LVV +  +      +++PV 
Sbjct: 25  ITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGATLVVASEPI-----EVAVPVI 79

Query: 87  GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V+D + A+  LA       +  LR    +I +TG+ GKTT   +L       K+    I
Sbjct: 80  YVNDTMKAMAILAATFYHHPSQDLR----VIGVTGTNGKTTVTHLLDYIFHDHKEKTGVI 135

Query: 141 GSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------- 185
           G+    IG  V  T    P  +        M   G +   +  V  H             
Sbjct: 136 GTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSG-VATCSMEVSSHSLVQGRVWGTDFD 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           IA+ T ++  HL     +E+ A AK+ +F  L       K     LN+DD      + K+
Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKPKFAILNFDDPVGRSFEEKT 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     ++S+G  + ADF+       +  +   +  + +  EV    +G     N L  
Sbjct: 255 AA----RVFSYGIDQPADFKATDLSITNRGTRFNLNFENRVYEVQLQLVGKFNVSNALAA 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326
           +        D+ + I+++       GR
Sbjct: 311 IAGAYAAGLDLTSVIQSIEKISGVRGR 337


>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           RCH1]
          Length = 486

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 38/315 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  LL    G     +PQ     I  DSR + P + F A+ G   DG  FI  AV +GA
Sbjct: 7   TFDTLL----GRVAATLPQ-----IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122
            +VV   D +  +   +  V   DD   AL  L   AR  + +    ++ +TG+ GKTT 
Sbjct: 58  TMVVCRADGLQHLPEAAFAVAVHDDPRAALGALG-QARYGTASLPFPVVGVTGTNGKTTI 116

Query: 123 KEMLTIALSSIKKTYACIGS----YNNHI-GVPLT----------LARMP-VDVDFGIFE 166
             +L    +S  +    +G+    +  H+   PLT          L +M    VD    E
Sbjct: 117 TYLLEHLFASAGRRCGVLGTVSYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFL 225
           +    L + R     +R   AV+T +   HL     +E   +AKA +F  L + G    +
Sbjct: 177 VSSHALDQERVAG--IRFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAV 234

Query: 226 NYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQS-WMEVQLQGKSME 282
           N DD +   LL     A+G       G   +    L  +  +CS     + +  +G++ E
Sbjct: 235 NADDPWGRRLLADLPGAVGFALT---GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWE 291

Query: 283 VVHHGIGYHMAQNML 297
           V    +G H A N+L
Sbjct: 292 VDSPLVGAHNASNLL 306


>gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actF]
          Length = 526

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%)

Query: 17  HSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
            ++G+ P+G        V GI+ DSR++ P + + A+ G  + G DF   A   GA   +
Sbjct: 27  EALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAVAAL 86

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEM 125
            +      + +  +PV  V D  G +   A+AAR+          I ITG+ GKTTT  +
Sbjct: 87  TDPAGAERVLAAGLPVLVVGDPRGRMG--ALAARIYGNPGDDLLQIGITGTSGKTTTAYL 144

Query: 126 LTIALSSIKKTYACIGSYNNHIGVP-LTLAR-MPVDVDF----------GIFELGM---S 170
           +   L +   +   IG+    IG   L   R  P   D           G+  + M   S
Sbjct: 145 MEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 204

Query: 171 H---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
           H   LG +  + H     +AV   ++P H+   SG+E+   AKA++F     + G +  N
Sbjct: 205 HALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVV--N 258

Query: 227 YDDSFFELL 235
           YDD +   L
Sbjct: 259 YDDEYGRRL 267


>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 492

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 136/353 (38%), Gaps = 23/353 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSK 254
           HL     +E   + K+ +F   +    + +N DD +  EL+           +Y +G S+
Sbjct: 209 HLDYHGTMEAYDAIKSRLFYWQDLQHAV-INIDDEYGAELVCRLKKDCPDLAVYGYGFSE 267

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            AD ++  +   S+      Q            +G   AQN+   + ++      +D  +
Sbjct: 268 RADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVL 327

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             L    P  G   R  C +N G   L+   Y   P +++ A+S L +I P G
Sbjct: 328 DVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376


>gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 481

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 159/384 (41%), Gaps = 42/384 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  DSR I   + F A++G   DGH +I  A++ GA  V+V+  +        +    V
Sbjct: 24  GMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGAKGVLVSKKVEP---EFPVEYILV 80

Query: 89  DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+   L K+A       + K  II ITG+ GKTT+  +L   L   K+  A IG+    
Sbjct: 81  KDLRKNLGKIASNFYGYPQKKLKIIGITGTNGKTTSTYLLESILG--KEKVARIGTVEYK 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAVITTI 192
           IG  +  A         I ++    + + + +L   V  H             +A  T +
Sbjct: 139 IGDEVIEAPNTTPESLDIVKMCKKAVEKGLEYLVMEVSSHALSLGRVDMLEFDVASFTNL 198

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     ++    AK ++F  L+ +    +N DD + + L  +         YS+  
Sbjct: 199 TLDHLDYHENMDNYFQAKRKLFTMLKDSKKSSINIDDIYGDRLYKEFGG------YSYSL 252

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +K+AD      +  S+  ++ + L G+  E     +G +   N+L  +GI   L    + 
Sbjct: 253 TKSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLAILGRYNLYNVLGVIGIALQLGIGKNI 312

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++ L       GR +   C   Q +  ++D ++  +     A  ++L  I+   +GR I
Sbjct: 313 ILEKLKDIKGAPGRFELVNCG--QDYIVVVDYAHTGD-----ALENILKSINELKKGRVI 365

Query: 373 AVLG-----DMCE---MGELSQSF 388
            V G     D  +   MGE++Q  
Sbjct: 366 TVFGCGGDRDATKRPIMGEIAQRL 389


>gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actG]
          Length = 521

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%)

Query: 17  HSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
            ++G+ P+G        V GI+ DSR++ P + + A+ G  + G DF   A   GA   +
Sbjct: 22  EALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAVAAL 81

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEM 125
            +      + +  +PV  V D  G +   A+AAR+          I ITG+ GKTTT  +
Sbjct: 82  TDPAGAERVLAAGLPVLVVGDPRGRMG--ALAARIYGNPGDDLLQIGITGTSGKTTTAYL 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVP-LTLAR-MPVDVDF----------GIFELGM---S 170
           +   L +   +   IG+    IG   L   R  P   D           G+  + M   S
Sbjct: 140 MEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 199

Query: 171 H---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
           H   LG +  + H     +AV   ++P H+   SG+E+   AKA++F     + G +  N
Sbjct: 200 HALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVV--N 253

Query: 227 YDDSFFELL 235
           YDD +   L
Sbjct: 254 YDDEYGRRL 262


>gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 490

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 152/381 (39%), Gaps = 52/381 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           PQ ++ GISI S+ +     FFA KG   DGH FI  A+QKGA  VV     V    +++
Sbjct: 21  PQKWIKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPVLLHKNIT 80

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + V    D LG ++          K  ++ ITG+ GKT+   +L      + +    I 
Sbjct: 81  YVIVKNSMDALGTISS-NFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEKSILIS 139

Query: 142 SYNNHIGVPLTLARMPVD------VDFGIFELGMSHLGEIRFLTHLVRPH------IA-- 187
           +    +G+ +     P        VD   + L +S     ++    V  H      IA  
Sbjct: 140 T----MGIKILSQEFPTKHTTPSIVDINKY-LNLSIQKGCKYAFMEVSSHGIHQKRIAGL 194

Query: 188 -----VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDD-SFFELLKAKSH 240
                V+T I   HL      E   S K   FE  L K     +N DD +  E++K    
Sbjct: 195 LFTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEIIKN--- 251

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQN 295
              +  IY +G  K  D++++          M+  + G  + +  H      IG     N
Sbjct: 252 --VLAKIYFYGLKKKTDYRIK---------IMKKNIHGNQLLIDGHKFFTFLIGEFNVSN 300

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L       +L    +  ++ ++   P +GR +++      G   ++D  Y  NP  +K 
Sbjct: 301 LLACYATAILLGKKKEEILQKINTIPPIKGRFEQFISY--SGIRIIVD--YAHNPDGIKN 356

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +  + +I    E R I ++G
Sbjct: 357 LLKAIQEIKKQ-EERLICIIG 376


>gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis FAM18]
 gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           FAM18]
          Length = 492

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           S++AD ++  +   S+         W E + + + +       G   AQN+   + ++  
Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D  +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P
Sbjct: 319 NDYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKP 374

Query: 366 HG 367
            G
Sbjct: 375 QG 376


>gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis 8013]
          Length = 492

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  A+  GA  V  + D   +     ++P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L    P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
 gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
          Length = 486

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 144/364 (39%), Gaps = 39/364 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G +P+  +  ++IDSR I    AF  IKG   DGHDF   A  +GA L++    M     
Sbjct: 17  GPLPE-HIEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQGATLIITEKPMTIDNA 75

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKK 135
           ++ + V      LG L     AA+     +    +I +TG+ GKT+   +L   L  + +
Sbjct: 76  TV-VEVESTSRTLGLL-----AAKFYDYPSKLLHMIGVTGTNGKTSVAGILHSMLMELGE 129

Query: 136 TYACIGS--YN---------NHIGVPLTLARM---PVDVDFGIFELGMSHLGEIRFLTHL 181
             A  G+  +N         N     LT  +M     D D     + +S  G +      
Sbjct: 130 KSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARARDEDCSHMTMEVSSHGLVLGRLAG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFF-ELLK 236
           V    A+ T +   HL     +EE   AKA +F    + L       LN DD +  EL K
Sbjct: 190 VEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAILNADDPWSKELAK 249

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              H      +Y++G   +A FQ +  +     +   +        V    +G     N 
Sbjct: 250 MTPHP-----VYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMKLLGEFNVSNA 304

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L ++  +      +D  +KAL+   P EGR ++         F  ID  Y   P +++ A
Sbjct: 305 LASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAPISIF--ID--YAHTPDAIEKA 360

Query: 357 ISVL 360
           I  +
Sbjct: 361 IDAV 364


>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
 gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
          Length = 496

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 148/380 (38%), Gaps = 51/380 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR  A    F  I G H D H FI +A + GA  V+   D VA    +S  V 
Sbjct: 25  ITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAGARAVLTERDKVAVPPGIS--VL 82

Query: 87  GVDDVLGALNKL--------AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            V D+  AL+ +        A A R      +I ITG+ GKTTT  ++   L    +   
Sbjct: 83  HVPDLQEALDLIVPYFYDYPARAMR------VIGITGTNGKTTTSYLVRAMLRHAGRRVG 136

Query: 139 CIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182
            IG+                 + I +   LA M    +D  + E+    L + R     +
Sbjct: 137 LIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVMEVSSHALDQGRVAG--I 194

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-----EGLEKTGTIFLNYDDSFFELLKA 237
               AV T +   HL     +E  A AKA +F     +G+++  T  LN DD+  ++++A
Sbjct: 195 EFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKTAILNADDAAAKMMRA 254

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNM 296
            +H      + ++G    A    RK +   +   + +   G  +  V  GI G     N+
Sbjct: 255 HTHC----PLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPAVQTGITGLFNVYNV 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L   G              AL+ F    GR +  R    Q F  ++D  Y   P  M+  
Sbjct: 311 LAAAGAALAEQVTASDITAALAAFSGVPGRFELVRA--GQDFSVIVD--YAHTPDGMENV 366

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +     ++    GR I V G
Sbjct: 367 LRTARAVT---TGRIITVFG 383


>gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M13399]
          Length = 492

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           S++AD ++  +   S+         W E + + + +       G   AQN+   + ++  
Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D  +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P
Sbjct: 319 NGYPLDNVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKP 374

Query: 366 HG 367
            G
Sbjct: 375 QG 376


>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 484

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 27/287 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA  ++
Sbjct: 6   LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+  ++ 
Sbjct: 66  VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122

Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171
             L         IG+  N+IG          P +     L +  VD  V++ + E+  SH
Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + + ++    + T +   HL      E   +AK ++F   E++    +N DD +
Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237

Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              +       G+KT + +F   K +DF+  + K  S  S  +V L+
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE 284


>gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae CWL029]
 gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae J138]
 gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae TW-183]
 gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           J138]
 gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 483

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 179/455 (39%), Gaps = 62/455 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  +Q    G V    V  ++ DSR ++  + F A KG  YDG+DF + A+  GA 
Sbjct: 3   LKELLHGVQAKIYGKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANGA- 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLR------SKATIIAITGSVGK 119
                   +A   SL  P   V  ++   L +L      +      SK   I +TG+ GK
Sbjct: 62  --------IAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPL---------TLARMPVD-V 160
           TT   ++   L S +K    +G+  + +G          P          T+ R   D V
Sbjct: 114 TTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAV 173

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              +  +G++  G + +         AV+T I   HL      E   +AKA++F  +  +
Sbjct: 174 VMEVSSIGLAS-GRVAYTNF----DTAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPS 228

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G + +N D  +       + A     + ++G    AD++    +  S  +   +    + 
Sbjct: 229 GMVVINTDSPYASQCIESAKA----PVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +      IG +   N+L  +  V + L  D++  ++ + +  P  G   R    L     
Sbjct: 285 IACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPG---RLDPVLMGPCP 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID  Y   P ++   ++ L ++ P G GR I V G  C  G+  +S    +A+V+  Y
Sbjct: 342 VYID--YAHTPDALDNVLTGLHELLPEG-GRLIVVFG--CG-GDRDRSKRKLMAQVVERY 395

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
                   GF V+   +          +E  DG +
Sbjct: 396 --------GFAVVTSDNPRSEPPEDIVNEICDGFY 422


>gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 492

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 23/258 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  +  I+ DSR   P   FF +KG  +DGH F+  A++ GA  VV + ++V       
Sbjct: 11  PEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEELVHY--EEG 68

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           I  F V+DV+  LN +A    A       +  +TG+ GK +  +++   L+  K T   I
Sbjct: 69  ILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAKIIQEVLNPDKAT-GNI 127

Query: 141 GSYNNHIGV----PL----------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           GS +   G     PL          ++ +  VD       L +S +G  +     V    
Sbjct: 128 GSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVEQKRVQSVHFDY 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     ++    AK + F+ L++      N DD +   +   S A     
Sbjct: 188 AIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEKACAITNIDDPYGLKMVEDSEA----R 243

Query: 247 IYSFGKSKNADFQLRKWK 264
           + ++G S+ A + +R+++
Sbjct: 244 VVTYGMSEEAMYSIRQYR 261


>gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
 gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
          Length = 486

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 22/279 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168
           I+AITGS GKT+ K  L   L S    Y+ +GS N  +G+   + + +P +    I E G
Sbjct: 163 ILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLSQDINQNLPENTTLYIAEAG 222

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G+I  ++ L+  H AVIT +   H+  F  ++ +   KAE+ E   +    F +++
Sbjct: 223 ARQPGDIAAISQLLNHHYAVITEVGAQHIEYFKTLDNVIKTKAELLES-SRLEHAFCHHN 281

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           ++  EL+  K      K  +  G       Q+R+ +   E +  E+ L  +        +
Sbjct: 282 EALEELISQKD-----KITFYPG-------QVRRVQATLEGTSFELLLGEQWARFESKIL 329

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N+ + + +       +D   ++++  +P   R +     L+     +ID+ +N 
Sbjct: 330 GAFNVENITLAVMVGFYFGIPIDQLQRSVAKLNPVPHRLQ----VLHLNDKVIIDDGFNG 385

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           N   M  A+    ++S    GR+I V   + E  E S +
Sbjct: 386 NLKGMLEAV----RLSSLYVGRKIIVTPGLVESDEESNT 420


>gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
 gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
          Length = 499

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 145/364 (39%), Gaps = 38/364 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++ P + F  + G H DGH FI   ++ G   +++       +  L IP   V DV 
Sbjct: 37  DSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLLIQR----PVSGLPIPWIQVTDVR 92

Query: 93  GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            A+  +A A       K  + A+TG+ GK+TT  M+   L +       +G+     G  
Sbjct: 93  AAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVRSILQNCGVKCGLLGTIVYDDGSK 152

Query: 151 LTLARMPVD------------VDFGIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAP 194
             LA                 VD G     M   SH + + R    L     AV T + P
Sbjct: 153 SVLADRTTPEGSEIQQFLKNMVDNGCQACSMECSSHGIAQGRLSGCLY--DGAVFTNLTP 210

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            HL     +E    AKA +F    K G  +  N        L A+        + +  + 
Sbjct: 211 EHLDFHGTMENYYEAKAALFRKYLKPGAAVAPNAASEHGRRLAAEFPQAMTWALEAPARL 270

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDT 312
           + A+ +L       + S  ++   G+ M  VH  + G H  +N L    +      D   
Sbjct: 271 QGANVKLD-----IDGSEFDLIFDGRKMGRVHIPLSGRHNVENALGAAAVCLAEGCDEKK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +  L++     GR +R    L+ G   +ID ++ A+  S+KA   +L  + P  EGR +
Sbjct: 326 VVAGLALMPQVPGRMERLN--LDNGVRVVIDYAHTAD--SLKA---LLETLRPLTEGRLV 378

Query: 373 AVLG 376
           ++ G
Sbjct: 379 SLFG 382


>gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Neisseria meningitidis H44/76]
 gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis CU385]
 gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis H44/76]
          Length = 492

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  + G+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
          Length = 499

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 157/371 (42%), Gaps = 35/371 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P   V+ ++ DSR      A+FA++G   DGH FI  A+ KG G VVV  ++  S+ 
Sbjct: 19  GRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFISDALSKGVG-VVVCEEIPVSVD 77

Query: 80  SLSIPVFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIAL--SS 132
                +   D         A      A+ LR    +I +TG+ GKTTT  ++   L  S 
Sbjct: 78  ERCCYIRVADCRTALAAAAAEWFGHPASSLR----VIGVTGTNGKTTTARLIRTMLDRSG 133

Query: 133 IKKTYACIGSYNNHIG-VPLTLAR-MPVDVDFGIFELGMSHLGE------------IRFL 178
           +K  Y  IG+    IG   + L R  P  +D       M + G             +   
Sbjct: 134 VKTGY--IGTGQALIGDESIVLERTTPEAMDLHALFRKMVNCGCEAVVMEVSSHALVLHR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA- 237
           T  +  + AV T + P HL   + ++E  SAK  +F  +   G   +N DD++  ++   
Sbjct: 192 TEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQVAPDGFGIVNADDAWGSMMAGA 251

Query: 238 -KSHALGIKTIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                L   T+ S  FG +  +  + R  +   + S + VQ+ G++        G     
Sbjct: 252 FSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSVTVQMNGRACRASFLLPGLFNVM 311

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           NML  L     +   ++TA  +++     EGR +    + + G F+ I + Y   P +++
Sbjct: 312 NMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPV--SDDGGLFSAIVD-YAHTPDALE 368

Query: 355 AAISVLSQISP 365
             I  L+++ P
Sbjct: 369 KVIGALNEVRP 379


>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 498

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 120/277 (43%), Gaps = 37/277 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F ++LQ+++  S G   +  + GI+ DSR   P   F A++G   DGHD+IL AV  GA 
Sbjct: 3   FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62

Query: 67  LVVVNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKT 120
            V++  DM+    I    +P     D   AL  L  +AR  +    +  +I +TG+ GKT
Sbjct: 63  AVILQKDMILPDYIAWARVP-----DSRKALALL--SARFYNYPSRRLKMIGVTGTNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLG----E 174
           TT  ++     +       IG+  N IG  +   +   P   D       M   G     
Sbjct: 116 TTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVA 175

Query: 175 IRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE----KTGT 222
           +   +H +  H        IAV T +   HL     +E+  +AK+ +F GL+    K G 
Sbjct: 176 MEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGA 235

Query: 223 IF--LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +  +N DD       A+   L    + ++G  K AD
Sbjct: 236 KYAIINADDE----AAARLTRLSGGQVITYGMVKKAD 268


>gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
 gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
          Length = 506

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 114/275 (41%), Gaps = 27/275 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL    D L A Q           V GI+ DSR++ P + + A+ G    G DF+  A 
Sbjct: 15  TPLAELADQLGAAQPDRTA-----DVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAA 69

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGK 119
             GA  V+ +        +  +PV  V+D    + +LA     R    +  I ITG+ GK
Sbjct: 70  SLGAVAVLTDPGGAERAAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRF 177
           TTT  ++   L + K T   IG+    IG     +    P   D       M   G +  
Sbjct: 130 TTTAYLVEGGLKTAKAT-GLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERG-VEA 187

Query: 178 LTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +   V  H             +AV T ++P H+   SG+E+   AKA++F    ++    
Sbjct: 188 VAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PARSRLGI 246

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +N DD +   L A+   + + T YS     +AD++
Sbjct: 247 VNADDEYGRRL-AEEATVPVVT-YSAEGHPDADWR 279


>gi|188527417|ref|YP_001910104.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
 gi|188143657|gb|ACD48074.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
          Length = 470

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+ K+ L   L +   T+A   S N  +G+   +
Sbjct: 135 AKDKIASLKNLK----VIAITGSFGKTSIKKFLLQILQTTFNTHASPKSVNTLLGLANDI 190

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  D  I E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 191 NQNLDDRSDIYIAEAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 250

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 251 LLDSKRLEK 259


>gi|148907754|gb|ABR17003.1| unknown [Picea sitchensis]
          Length = 583

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H+A N      +   L   +    K+L+ F P + R     C   +    +I+++YNA
Sbjct: 405 GLHLAMNACAAGAVAVSLGIPLPQVGKSLANFRPAKMRLNIENC---KNKIRIINDAYNA 461

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM AA+ +L  I    +GRR+A+LGDM E+G+  +  H+D+ ++     I  V ++G
Sbjct: 462 NPVSMVAALELLHSID--CKGRRVAILGDMLELGKFGKKAHLDVIKLCLELGIELVGIAG 519

Query: 409 FHVL-ALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVVKSS 452
              + A+K A   S        +D   L  Q       GDVV+VK S
Sbjct: 520 LQFMEAIKVADLTSAEFSVISALDSESLASQIGKKFTAGDVVLVKGS 566


>gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
 gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
          Length = 130

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRS  P + F A+KG  +D HDF+     +GA   +V+     S    ++P   V 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 85  DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118


>gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 572

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 151/371 (40%), Gaps = 31/371 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V GI+ DSR++ P + + A+ G  + G DF   A   GA  V+ +        +  +P
Sbjct: 81  GEVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAAVLTDPAGAERAAATGLP 140

Query: 85  VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   +D    + +LA     R    +  + ITG+ GKTTT  ++   L +  +    IG+
Sbjct: 141 VLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTAYLVEGGLRAAGRPTGLIGT 200

Query: 143 YNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187
               IG     +    P   D       M   G +  +   V  H             +A
Sbjct: 201 VEMRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVA 259

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-T 246
           V   ++P H+   SG+E+   AKA++F   E++    +N+DD +   L  +S   G+  T
Sbjct: 260 VFNNLSPEHMEFHSGMEDYFQAKAQLFT-PERSHRGVVNFDDEYGRRLLTES---GVPVT 315

Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +S     +AD+     +   + S +  V  +G+ +       G     N L    IV++
Sbjct: 316 SFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPLPGPFNVANTLAA--IVTL 373

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A VD  I A  +       G+  R    Q +  ++D ++  +     A  SVL  +  
Sbjct: 374 AVAGVDPQIAADGIAAVPGVPGRLERVDAGQPYLAVVDYAHKTD-----AVESVLRSLRK 428

Query: 366 HGEGRRIAVLG 376
             EGR   VLG
Sbjct: 429 VTEGRVHIVLG 439


>gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis Z2491]
 gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           Z2491]
 gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240013]
          Length = 492

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 138/355 (38%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ AD ++  +   S+      Q      +     +G   AQN+   + ++      +D 
Sbjct: 266 SEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 492

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 31/357 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL+           +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310
           S++AD ++  +   S+   +E   +    E   H   +G   AQN+   + ++      +
Sbjct: 266 SEHADIRITDFTASSDG--IEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           D  +  L    P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 483

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +F D++  I            +  I+ DSR      AF AIKG   DGH +I  A++K
Sbjct: 7   LISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKK 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA L++   D+    G   I    V+D   AL +++  +      K  ++A+TGS GKTT
Sbjct: 67  GASLIIHTEDVTCEEG---ISYIRVNDPRKALAQISNLIYDFPSKKMELVAVTGSNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG 148
           T  ++   +  I    A IG+ N H+G
Sbjct: 124 TSRLIAFLMGEIFGDSASIGTNNAHVG 150


>gi|109947254|ref|YP_664482.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
 gi|109714475|emb|CAJ99483.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
          Length = 493

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L+S   +IAITGS GKT+TK  L   L +    +A   S N  +G+   + +   D  
Sbjct: 163 ASLKS-LKVIAITGSFGKTSTKNFLHQILQTKFNVHASPKSVNTLLGIANDINQNLEDSS 221

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  I E G  + G+I+ +THL+ PH+AVIT +   HL  F  +E I   KAE+ +
Sbjct: 222 EIYIAEAGARNKGDIKEITHLIEPHLAVITEVGEQHLEYFKTLENICETKAELLD 276


>gi|317182049|dbj|BAJ59833.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F57]
          Length = 493

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    YA   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
 gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
          Length = 504

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 136/319 (42%), Gaps = 34/319 (10%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           D+++ I+  +I G +P   VN IS DSR I   + F AIKG   DGH++I   + +GA L
Sbjct: 11  DIIENIKIKTIYGSLPTK-VNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQGAAL 69

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +     ++   ++ V    ++    + LA      +K   +A+TG+ GKT+   ++ 
Sbjct: 70  VIASRYEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTVAVTGTNGKTSISTLVH 129

Query: 128 IALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             L  + ++ + IG+  +  +   P+ L     DV     ++G  H  +I+ L      H
Sbjct: 130 NMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEASSH 189

Query: 186 -------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-------L 225
                        +A+ T +   H+     ++  A  K+ +F  L   G  F       L
Sbjct: 190 AMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTL---GNNFSEAKYGVL 246

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----M 281
           N DD ++ ++   S  L  + I      + ADF     KQ SE    +     KS     
Sbjct: 247 NKDDEYYSIM---SKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEY 303

Query: 282 EVVHHGIGYHMAQNMLMTL 300
           E   + IG  M  N+L  L
Sbjct: 304 ECQTNYIGDFMVSNVLAAL 322


>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 512

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 17/228 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ IS DSR + P   F A++G   DGH FI  AV++GA  V+   ++   +   S+P  
Sbjct: 25  VSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVERGAAAVLCE-EIPPVLPDASLPYL 83

Query: 87  GVDDVLGALNKLAVA-ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D   AL   A       S A  +I +TG+ GKTTT  ++T  L++       IG+  
Sbjct: 84  RVEDARQALALAARQFYGFASDALHVIGVTGTNGKTTTARLITAMLNACGIRTGYIGTNL 143

Query: 145 NHIG---VPL-----------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              G   +PL            L R  +D    +  + +S    +    + +  H AV T
Sbjct: 144 CTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAVMEVSSHALVLQRVYGITFHAAVFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            ++  HL     ++E A AK ++FE L   G   +N DD   E + +K
Sbjct: 204 NLSMEHLDFHKTMQEYAGAKRQLFEQLSPQGFAVINSDDPRAEEMVSK 251


>gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
          Length = 492

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 140/367 (38%), Gaps = 51/367 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188
            L         PVDV   ++                  L  S +  + F +       A+
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCS-------AI 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
            T +   HL     +E   + K+ +F   +    + +N DD +  EL+           +
Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHDLQHAV-INVDDEYGAELVGRLKKDCPDLVV 260

Query: 248 YSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           YS+G S+ AD ++  +   S+         W E + + + +       G   AQN+   +
Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACI 313

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++      +D  +  L    P  G   R  C +N G   L+   Y   P +++ A++ L
Sbjct: 314 ALLCANGYPLDKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATL 369

Query: 361 SQISPHG 367
            +I P G
Sbjct: 370 QEIKPQG 376


>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
 gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
          Length = 496

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 165/407 (40%), Gaps = 49/407 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPL +F   L     +  G + +  +N +++DSR +   + F A+KG   DG  FI  A
Sbjct: 1   MNPLLSFFPEL-----NHWGELKE--LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53

Query: 61  VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATII 111
           +++GA LV+   D             + +  V  V ++   L+ +A A       K T++
Sbjct: 54  IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF 165
            ITG+ GKTTT ++ +   + +    A +G+  N +       V  T + + +  +   F
Sbjct: 114 GITGTNGKTTTAQLFSQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANF 173

Query: 166 -ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            ELG       +S  G  ++    +   +A+ T ++  HL   + +EE A AK  +F  L
Sbjct: 174 VELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGEL 233

Query: 218 EKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQ 269
                + +N DD       AK   A+ + T   F        K+K   F L+      E 
Sbjct: 234 SSKQQV-INADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFES 292

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           SW   +L+ +        IG     N+L     +  L  D+   ++   + +   GR + 
Sbjct: 293 SWGNGELKSRL-------IGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMEC 345

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                N     ++   Y   P +++ A   L     H EG    V G
Sbjct: 346 LISEENAEESPMVIVDYAHTPDALEKA---LDAARLHCEGELWCVFG 389


>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 482

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 147/368 (39%), Gaps = 41/368 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR +   + F  IKG   DGH +I  A + GA  +V++ ++       ++P   V 
Sbjct: 26  IQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNGAAAIVISEEV------ENVPDCTVI 79

Query: 90  DVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V      LA+ +         K  II ITG+ GKTT+  M+   L +       +G+  
Sbjct: 80  KVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTSTFMMKSILETAGYKVGLVGTIA 139

Query: 145 NHIG---------VPLTLA-----RMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P +L      +  VD  V + + E+    L   R   + VR   A+
Sbjct: 140 NYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVMEVSSHSLYLDR--AYGVRFSEAI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E    AK  +F+    T    +N DD + +  K    ALG K  Y
Sbjct: 198 FTNLTRDHLDFHKTFENYYKAKLILFKN---TINSVINIDDKYGD--KVYEDALGTKITY 252

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +   +K AD +       S  +   +  +G++  +  +  G +   N L ++G       
Sbjct: 253 AI--NKEADLKANDLNIHSRGANFNITYRGQTAHINLNIPGKYNVMNALGSIGACLCEGI 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++   K L   +   GR +      N G+  ++D  Y   P  ++   ++L        
Sbjct: 311 SLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVD--YAHTPDGLE---NILKTAREFTT 365

Query: 369 GRRIAVLG 376
           GR IAV G
Sbjct: 366 GRLIAVFG 373


>gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
          Length = 522

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 149/371 (40%), Gaps = 31/371 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +P
Sbjct: 32  GDVTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVAVLTDPTGAERAAATGLP 91

Query: 85  VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   ++    + +LA     R    +  I ITG+ GKTTT  ++   L +  +    IG+
Sbjct: 92  VLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAYLVEGGLRAAGRPTGLIGT 151

Query: 143 YNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187
               IG     +    P   D       M   G +  +   V  H             +A
Sbjct: 152 VEMRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVA 210

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-T 246
           V   ++P H+   SG+E+   AKA++F   E++    +N+DD +   L  +S   G+  T
Sbjct: 211 VFNNLSPEHMEFHSGMEDYFQAKAQLFT-PERSHRGVVNFDDEYGRRLITES---GVPVT 266

Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +S     +AD+     +   + S +  V  +G+ +       G     N L    IV++
Sbjct: 267 TFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPLPGPFNVANTLAA--IVTL 324

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A V   I A  V       G+  R    Q +  ++D ++  +     A  SVL  +  
Sbjct: 325 AVAGVAPQIAADGVAAVPGVPGRLERVDAGQPYLAVVDYAHKTD-----AVESVLRSLRK 379

Query: 366 HGEGRRIAVLG 376
             EG+   VLG
Sbjct: 380 VTEGKVHIVLG 390


>gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 487

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 156/372 (41%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G + DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  A+A R    ++    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLS--AIAGRFYGDSSRSLILVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAG---ARAVAMEVSSHGLDQGRAAALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F  L+    + +N DD F   L A      +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCRV-INLDDDFGRELAAVKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +KAL       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 499

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 31/314 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85
           V GI+ID R I   + F A+ G H DG DF   AV++GA  V+     VA  +  L +P 
Sbjct: 51  VTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTAGQPVAVGVPQLVVPR 110

Query: 86  FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             +   +G      VA R+     S  ++I +TG+ GKTTT  +++  L  + +    +G
Sbjct: 111 ASLRTAVG-----RVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLERLGEGVGVLG 165

Query: 142 SYNNHIGVPLT--LARMPVDV-DFGIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPA 195
           +  + +  P    LAR   +  D G   + M  +  I      +      + V T ++  
Sbjct: 166 TLWSRLTTPEAPELARRLAEFRDSGRRWVAM-EVSSIAIAMERIEGLHVRVGVFTNLSQD 224

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E+  +AKA +FE  E+T    +N DD +   L A      +    S      
Sbjct: 225 HLDFHGSMEDYFAAKARLFE-PERTAIGVINVDDPWGARLAASVRVPVVPVSISAVTDIE 283

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            D    ++++     W   +L           +G H  +N+L+ + ++  +  D D    
Sbjct: 284 IDAAGIRFRRNGR--WYRSRL-----------VGEHNLRNILLAVSVLEQVGFDPDLLRG 330

Query: 316 ALSVFHPKEGRGKR 329
            L       GR +R
Sbjct: 331 VLGEVESPRGRMQR 344


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGVD 89
           S DSR     E F A++    DGHD+I  A+  GA G++       A   ++ +      
Sbjct: 28  SYDSRLTVAGECFIALRTTRADGHDYIPAALAAGARGILCTRPPHDAGTATVVV----CP 83

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D    L + A     R + T+IA+TG +GKT  +  +   L++   T+    ++N+ +G+
Sbjct: 84  DPQALLLRWASNRLQRLQPTVIAVTGGIGKTLARRAIAAVLATHAPTFQSRRNFNSLLGL 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           P+ LAR+  D  + + E    HL     L     P +AV+T
Sbjct: 144 PIALARLERDHQYAVLEFAGEHLPP---LAAAFPPRLAVVT 181



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D+S+NA P +M+AA+  L+ I     GRRIAVLG   E+  +  +  +    + +  +
Sbjct: 300 ILDDSFNATPEAMRAALQTLAAIP---TGRRIAVLGTPTELPAVDATPLLTELGMQAARS 356

Query: 401 ISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             ++ L G     +  A     P ++ +H  +T + +   +  S  D DVV+V       
Sbjct: 357 AEYLVLKGMGAATMAQAARLANP-TVTIHVVDTNEAIRAALPPSRNDQDVVLVSGGAGER 415

Query: 457 FYRLINLLL 465
             +++  LL
Sbjct: 416 LEQVVAPLL 424


>gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
 gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
          Length = 486

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 157/386 (40%), Gaps = 35/386 (9%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+ G S  +     +  ++ DSR   P   FFA++G   DG  FI  A+ +GA  V+V+ 
Sbjct: 8   ALCGTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQGAAAVIVDQ 67

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +        ++PV    D    L  +A A      + I AITG+ GK++T + L      
Sbjct: 68  ETARP--DSAVPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTADFLRQLWIL 125

Query: 133 IKKTYACIGSY----NNHIGVPLTLARM-PVDVDFGIFEL---GMSHLGEIRFLTHLVRP 184
                A +G+     +  +  P +L    PV +   +  L   G+ H+  +   +H +  
Sbjct: 126 QGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVA-LEASSHGLEQ 184

Query: 185 HIAVITTIAPAHLSNFS--------GIEEIASAKAEIFEGLEKTGTIF---LNYDDSFFE 233
           H     T+  A  SN +         +E   +AK  +F+ +  TG I     + D   F 
Sbjct: 185 HRLDGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNADMDSETFS 244

Query: 234 LLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GY 290
            L+  A   +L ++++   G +     +L + +       + + L G+ +  +   + G 
Sbjct: 245 ALQDIAARRSLKLRSVGRNGTT----LRLIEARPTPSGQILRLALHGEELPEISLSLPGR 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+++   +     AD    +  L       GR +R   AL  G    +D  Y   P
Sbjct: 301 FQADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCERA-VALPNGAAAYVD--YAHTP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            ++     VLS + PH  GR + V G
Sbjct: 358 DALDC---VLSSLRPHTTGRLVVVFG 380


>gi|32265627|ref|NP_859659.1| hypothetical protein HH0128 [Helicobacter hepaticus ATCC 51449]
 gi|32261675|gb|AAP76725.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 493

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 136/324 (41%), Gaps = 61/324 (18%)

Query: 95  LNKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           LN+  + A+    + S+  II +TGS GKT+ K  L   L    + YA   S N H G+ 
Sbjct: 149 LNRYIILAKEKLDIMSRLIIIGVTGSYGKTSMKNFLAQILKEKYRVYATPRSVNTHTGI- 207

Query: 151 LTLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +A +  ++D+     I E G    G+I  ++  + PH AVI  +   HL  F  +E I
Sbjct: 208 --VADINQNLDYITEIYIIEAGARLKGDIALISQFLNPHYAVIGEVGEQHLEYFKSLENI 265

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRKW 263
              K                     FELL++      +K  + F    KS + +  + K 
Sbjct: 266 VETK---------------------FELLQSSR----LKKAFVFKDNPKSPHIEPNITKK 300

Query: 264 KQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDT 312
            Q   ++   ++  L G S E+   G  +H    +L    +V++  A          V+ 
Sbjct: 301 IQYFPENVRNIDANLDGTSFELFIKGEWHHFETMVLGVFNVVNLSAAIYMGVELGLQVEE 360

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             KA+    P   R  + +   +Q    +ID+ +N N   MK AI + S      +GR+I
Sbjct: 361 IQKAVKRIEPIPHRLNKIQT--HQKL--IIDDGFNGNLKGMKEAIRLCSLY----QGRKI 412

Query: 373 AVLGDMCEMGELSQSFHIDLAEVL 396
            V   + E    ++  +I+LA+ +
Sbjct: 413 IVTPGIVES---TKEANIELAQAI 433


>gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
 gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
          Length = 496

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 153/372 (41%), Gaps = 42/372 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V   + +S+   P + F A+ G H DGHDF+  A+  GA  ++    +       + PV
Sbjct: 14  VVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERAL-----PTTRPV 68

Query: 86  FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V++   A  ++  A+A     +  +I +TG+ GKTT   +    + SI +T       
Sbjct: 69  CIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRL----IQSIMETAGATVGM 124

Query: 144 NNHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLV---------RPHI----- 186
           ++ +G      R P D    +  +    +S + E    TH V         R  +     
Sbjct: 125 SSSLGYDNGYDRQPWDCTTPNAAVLADLLSRM-EYNGCTHAVVEASSEALSRDRLDGIEL 183

Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
               IT +   HL     +     AK +I   L +TG   +N DDS    L ++     +
Sbjct: 184 DAVAITNLRQDHLDVHGSVTNYHRAKKKILGRLRETGFAVVNADDSACNKLLSQIETPAL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++   G ++     + + K  SEQ+++ +    +++ V    IG H   N L+   +  
Sbjct: 244 -SVALHGAAEITASVVERHK--SEQTFL-LSAGDETVPVCTRMIGDHHVYNCLVAAAVGL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   D+ T ++ L       GR +R  C    G F  +  +++A   ++KA    L +++
Sbjct: 300 VYGVDLKTVVRGLERVDSIPGRMQRIECGQPFGVFVDLAHTHDALAMALKA----LRRVT 355

Query: 365 PHGEGRRIAVLG 376
               GR I V G
Sbjct: 356 ---HGRVICVYG 364


>gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
 gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
          Length = 520

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84
           +DSR I   + F  +K    D        +  L +V+  A  V+   D+V   +  + IP
Sbjct: 46  LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105

Query: 85  VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +  V ++   L  L +AARL+     +   IIA+TG+ GKTT  +++     +   + A 
Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164

Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N  +G  +  A    DV                +  L  S  G  ++    V   
Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241
            A+ T ++  HL   + +     AKA++F+       + G + L+ + + F+   A    
Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYETADFQI 284

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G    YS  K  NADF  +  +   +   +EVQ     M  +   +G     N+L ++ 
Sbjct: 285 IG----YSQQKP-NADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLASMA 339

Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + L     AD+   I  L     +  RG+  R +   G F +ID  Y   P ++K   
Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VLS +  H  GR IAV G
Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407


>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parasuis SH0165]
 gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           SH0165]
          Length = 496

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 49/407 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPL +F   L     +  G + +  +N +++DSR +   + F A+KG   DG  FI  A
Sbjct: 1   MNPLLSFFPEL-----NHWGELKE--LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53

Query: 61  VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATII 111
           +++GA LV+   D             + +  V  V ++   L+ +A A       K T++
Sbjct: 54  IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF 165
            ITG+ GKTTT ++     + +    A +G+  N +       V  T + + +  +   F
Sbjct: 114 GITGTNGKTTTAQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANF 173

Query: 166 -ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            ELG       +S  G  ++    +   +A+ T ++  HL   + +EE A AK  +F  L
Sbjct: 174 VELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGEL 233

Query: 218 EKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQ 269
                + +N DD       AK   A+ + T   F        K+K   F L+      E 
Sbjct: 234 SSKQQV-INADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFES 292

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           SW   +L+ +        IG     N+L     +  L  D+   ++   + +   GR + 
Sbjct: 293 SWGNGELKSRL-------IGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMEC 345

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                N     ++   Y   P +++ A   L     H EG    V G
Sbjct: 346 LISEENAEESPMVIVDYAHTPDALEKA---LDAARLHCEGELWCVFG 389


>gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 482

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 180/452 (39%), Gaps = 60/452 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T  +L    +       P   V G++ DSR + P   + A++G   DGH FI  A
Sbjct: 1   MTPVTTVAELFALYRAPG----PPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
           VQ+GA  +V    +   +  L +P     D   AL++LA A      ++  +I +TG+ G
Sbjct: 57  VQRGAVAIVGEEPLEPGVPYLRVP-----DARRALSRLAAAFYGFPSTRLFVIGVTGTDG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFEL---G 168
           KTTT  ++   L+   +    I +     G          T    P +V   + E+   G
Sbjct: 112 KTTTSCLVHHLLTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAP-EVQAALAEMVRRG 170

Query: 169 MSHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           ++H   +   +H +  H        +AV T ++P HL     +E    AKA +   + + 
Sbjct: 171 LTH-AVLETSSHALAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAAL---VNRA 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   LN    +   L  + H        ++G    A ++  + ++ ++     ++  G +
Sbjct: 227 GFSILNAGCPYAMRLTHRPHT-------TYGVQAGA-YRAVRVRESTDGLRFTLEAPGFT 278

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E     IG +  +N L  L         ++ A+ AL+ F    G   R +         
Sbjct: 279 GEAFLPMIGRYNVENALAALAAAHRAGVPLEEALPALARF---SGVPGRMQILQAHPIRA 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  +   P ++  A++ L   +P   GR I V+G   E          D A+   L  
Sbjct: 336 VVD--FAHTPKALAKALTALRPTTP---GRLIVVIGAAGER---------DPAKRAPLGR 381

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            + V L+ F V   +DA    +H    E   G
Sbjct: 382 TA-VTLADFAVFTEEDARSEDVHAILQEMERG 412


>gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
 gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
          Length = 483

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 159/395 (40%), Gaps = 45/395 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L   +DL  A+ G  I         G+S DSR+I    AFFAI G   DG  ++  A
Sbjct: 3   LTELLARNDLDPALAGIEIA--------GLSADSRAIREGFAFFAIPGHAGDGLSYVDDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA +VV            S+P+  VDDV   L   A     R    I A+TG+ GKT
Sbjct: 55  RARGARVVVAQRQ-----SECSLPLVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIG------SYNNHIGV-----PLTLARMPVDV-DFGIFELG 168
           +    L    +++    A +G      S   H G      P+ L R+  D+   G+  L 
Sbjct: 110 SVVASLRQIWTAMGHEAASLGTVGVVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLA 169

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFL 225
           M  S LG  +     VR  +A  T  +  HL +   +EE  +AK  +F+ L + G T  +
Sbjct: 170 MEASSLGIDQRRLDGVRLSVAGFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVI 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + D      + A     G+  ++  G +K     +R+ +  +  + ++++  G    V  
Sbjct: 230 DADSDVAPRVAAVCEKRGL-NVFGVG-AKGEAIAVREARAHALATSLKLRHAGVDYSVEL 287

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTL 341
              G     N L+  G+      D      AL+      GR    G+R       G    
Sbjct: 288 PLAGAFQTSNALVAAGLAIAAGDDPARVFSALNELKGAPGRLEFIGER------DGAPVF 341

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D  Y   P +++    VL+ + P  + R I V G
Sbjct: 342 VD--YAHKPDALE---KVLATLRPLTKRRLIVVFG 371


>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 494

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 159/395 (40%), Gaps = 45/395 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++ LQ+I     G   +G     + G  +DSR + P + +  I G H DGHDF   AV+ 
Sbjct: 7   NNTLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKA 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GA  + V   +      L +P   V ++     K+A A       K  +I +TG+ GKTT
Sbjct: 67  GAAALAVERYL-----PLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLELIGVTGTNGKTT 121

Query: 122 TKEML-TIALSSIKKT--YACIGSYNNHIGVP-------------LTLARMPVDVDFGIF 165
              ++ +IA  + KKT     +GS   + G+P             L    +   V+  + 
Sbjct: 122 VTHLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVM 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG-T 222
           E+    L   R +    R   A+ T +   HL     +EE  +AK  +F  +  EK G  
Sbjct: 182 EVSSHALDLGRIVG--CRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQMSGEKPGQK 239

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD   E L  K+       + ++G  K AD+Q  K     +  + ++  +    +
Sbjct: 240 AILNADDQASEYLMTKTSC----RVVTYGIEKKADYQAEKIVLSDKGIYFDLVYKKIREK 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N+L           + +   KAL       GR +  R    Q F  +I
Sbjct: 296 VFFATPGKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKG--QPFLVII 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRR-IAVLG 376
           D  Y   P  ++  +S   +I+    GRR I V G
Sbjct: 354 D--YAHTPDGLENVLSTAREIT----GRRLITVFG 382


>gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 449

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 55/397 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N + +A    L+IPV+     LG         RL SK   IA+ G+ GKTTT  M+ +AL
Sbjct: 75  NHEEIARARELNIPVYSYPQFLG---------RLMSKKRGIAVAGTHGKTTTTAMIGLAL 125

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             S I  T   +GS    IG      +       G F L  S      FL +   P   +
Sbjct: 126 LQSGIDPTI-VVGSDVPSIGGNAYSGQ-------GDFFLAESCEYRRHFLNY--SPEYLI 175

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H   F  ++++  A +EI + +   G IF+ ++D   + ++A+S       I 
Sbjct: 176 ITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS------PII 229

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307
           +FG ++ AD      +   E S M +   G  +   H H  G H   N L ++ +   + 
Sbjct: 230 TFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALCLEIG 289

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358
              +  +++LS F+   G  +R+   + Q    LI + Y  +P  +++ +          
Sbjct: 290 VPTEKVLESLSHFN---GTKRRFE-HIGQNAGALIVDDYAHHPTEIRSTLEGARLSFPDR 345

Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH----IDLAEVLSLYNISHVWLSGFHVLA 413
            + +   PH   R   +L       E SQSF     + +AE+ +  +     L+     +
Sbjct: 346 RIRAVFQPHTFSRTEKLL------QEFSQSFQAADEVVIAEIFA--SARETNLNTISASS 397

Query: 414 LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L D + +  ++  Y  +++ +  ++  +L  GD+V+ 
Sbjct: 398 LADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLT 434


>gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51]
 gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
 gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
          Length = 435

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 55/397 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N + +A    L+IPV+     LG         RL SK   IA+ G+ GKTTT  M+ +AL
Sbjct: 61  NHEEIARARELNIPVYSYPQFLG---------RLMSKKRGIAVAGTHGKTTTTAMIGLAL 111

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             S I  T   +GS    IG      +       G F L  S      FL +   P   +
Sbjct: 112 LQSGIDPTI-VVGSDVPSIGGNAYSGQ-------GDFFLAESCEYRRHFLNY--SPEYLI 161

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H   F  ++++  A +EI + +   G IF+ ++D   + ++A+S       I 
Sbjct: 162 ITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS------PII 215

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307
           +FG ++ AD      +   E S M +   G  +   H H  G H   N L ++ +   + 
Sbjct: 216 TFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALCLEIG 275

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358
              +  +++LS F+   G  +R+   + Q    LI + Y  +P  +++ +          
Sbjct: 276 VPTEKVLESLSHFN---GTKRRFE-HIGQNAGALIVDDYAHHPTEIRSTLEGARLSFPDR 331

Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH----IDLAEVLSLYNISHVWLSGFHVLA 413
            + +   PH   R   +L       E SQSF     + +AE+ +  +     L+     +
Sbjct: 332 RIRAVFQPHTFSRTEKLL------QEFSQSFQAADEVVIAEIFA--SARETNLNTISASS 383

Query: 414 LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L D + +  ++  Y  +++ +  ++  +L  GD+V+ 
Sbjct: 384 LADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLT 420


>gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 103P14B1]
 gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 46P47B1]
 gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC1]
 gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC7]
 gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis O35E]
 gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 101P30B1]
          Length = 520

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84
           +DSR I   + F  +K    D        +  L +V+  A  V+   D+V   +  + IP
Sbjct: 46  LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105

Query: 85  VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +  V ++   L  L +AARL+     +   IIA+TG+ GKTT  +++     +   + A 
Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164

Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N  +G  +  A    DV                +  L  S  G  ++    V   
Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241
            A+ T ++  HL   + +     AKA++F+       + G + L+ + + F+   A    
Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEAADFQI 284

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G    YS  K  NADF  +  +   +   +EVQ     M  +   +G     N+L ++ 
Sbjct: 285 IG----YSQQKP-NADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLASMA 339

Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + L     AD+   I  L     +  RG+  R +   G F +ID  Y   P ++K   
Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VLS +  H  GR IAV G
Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407


>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
 gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
          Length = 507

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 158/380 (41%), Gaps = 52/380 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P + F AI G   DG  FI  AV +GA  VV    + +S     +P F
Sbjct: 24  VTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPVPSS----QVPFF 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL  +A     R   + T++ ITG+ GKTTT  +L    ++   +   IG+  
Sbjct: 80  KVSSARKALALIAANFYGRPADQLTLLGITGTNGKTTTSYLLEAMSTAAYASTGVIGTLG 139

Query: 145 -----------NHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                      N    PL L R+        V+  I E+    L + R   H +    A 
Sbjct: 140 YKFAGRTVECANTTPDPLELHRILREMVEAGVETVIMEVSSHALAQERV--HGLTFKAAG 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            + ++  HL     +E+   +K ++F E L  TG   +N DD++   +  +      +  
Sbjct: 198 FSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAVVNGDDTYASRIYNEQRGQ-KRMA 256

Query: 248 YSFGKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           + F +  + +       F L+  K   +    ++ L+ K +       G H  +N+L+ +
Sbjct: 257 WKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKLL-------GPHNLENILLAV 309

Query: 301 GI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAA 356
           GI         DV   I+ +    P  GR +R       G    L+D ++  +  ++K +
Sbjct: 310 GIGLGAGFARRDVQEGIERM---MPVAGRMERVENYGPSGAPAVLVDYAHTDD--ALKRS 364

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           I     ++   +GR IAV G
Sbjct: 365 IEAARSLA---KGRVIAVFG 381


>gi|153846986|ref|ZP_01993905.1| glutamate-1-semialdehyde 2,1-aminomutase [Vibrio parahaemolyticus
           AQ3810]
 gi|149744849|gb|EDM56229.1| glutamate-1-semialdehyde 2,1-aminomutase [Vibrio parahaemolyticus
           AQ3810]
          Length = 230

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + ELG +H+GEI + T LV+P IA++  +A AHL  F  IE +  AK EI++GL+  G  
Sbjct: 1   VIELGANHIGEIAYTTQLVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIA 60

Query: 224 FLNYDDS 230
            +N D +
Sbjct: 61  IVNLDSN 67


>gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC8]
          Length = 520

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84
           +DSR I   + F  +K    D        +  L +V+  A  V+   D+V   +  + IP
Sbjct: 46  LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105

Query: 85  VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +  V ++   L  L +AARL+     +   IIA+TG+ GKTT  +++     +   + A 
Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164

Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N  +G  +  A    DV                +  L  S  G  ++    V   
Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241
            A+ T ++  HL   + +     AKA++F+       + G + L+ + + F+   A    
Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEAADFQI 284

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G    YS  K  NADF  +  +   +   +EVQ     M  +   +G     N+L ++ 
Sbjct: 285 IG----YSQQKP-NADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLASMA 339

Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + L     AD+   I  L     +  RG+  R +   G F +ID  Y   P ++K   
Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VLS +  H  GR IAV G
Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407


>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
 gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
          Length = 484

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 157/386 (40%), Gaps = 42/386 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL++I+  S+ I+    V+  G++IDSR I+   AF A+KG   DGH FI  A++
Sbjct: 1   MNLQELLKSIK--SLAIIGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIE 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKT 120
            GA  ++   DM     +  +    V     A+ KLA A       K  ++ +TG+ GKT
Sbjct: 59  LGAKAILCE-DMPED-RTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLVGVTGTNGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLT--LARMPVDVDFG-- 163
           T   +L      +      + +  N+I              + L   LA+M   VD G  
Sbjct: 117 TIATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKM---VDAGCE 173

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +F    SH    R +  L     A+ T +   HL      E   +AK   F+ L K+  
Sbjct: 174 YVFMECSSHAIAQRRIGGLTFTG-ALFTNLTRDHLDYHGTFENYRNAKKMFFDDLPKSAF 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD     +   + A    TI ++   + ADF+ R      E  +  + L     +
Sbjct: 233 AITNADDKNGMFMVQNTKA----TIKTYSMERMADFRAR----IIEMHFAGMYLNVDGND 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N+L   G   +L    +  +  LS  H   GR +  + +  +G   ++
Sbjct: 285 VGVQFIGKFNVSNLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQSS--EGVTAIV 342

Query: 343 DESYNANPASMKAAISVLSQISPHGE 368
           D  Y   P ++   ++ + ++   G+
Sbjct: 343 D--YAHTPDALANVLNAIREVDKTGQ 366


>gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
 gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
          Length = 487

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 149/374 (39%), Gaps = 34/374 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           FV G++ DSR +     F A+ G   DG DFI  A+ KGA  V+   D  A++ S    +
Sbjct: 19  FVTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAAAVLAPDD-TAALESPDSLL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
             V DV  A   LA  A   S+  I +A+TG+ GKT+         S++ K  A +G+  
Sbjct: 78  VKVSDVRRAY-ALAAKAFYGSQPKICVAVTGTNGKTSVATFCRQIFSTLGKKSASMGTLG 136

Query: 144 --NNHIGVPLTLARMP-------VDVDFGIFEL---GMSHLG--------EIRFLTHLVR 183
              + I    T    P        D+   + EL   G++HL         + R L   V 
Sbjct: 137 VVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLALEASSHGIDQRRLDG-VS 195

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHAL 242
              A  T +   HL   + +E    AK  +FE L   G T  LN D   +    A    L
Sbjct: 196 LTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVLNADSDAYNSFAAMC-VL 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              ++ S G+ +     +       +   + ++ QG+  E      G   A N L+  G+
Sbjct: 255 SGTSVMSVGE-RGRGLAMVGRDLTVDGQILFIEHQGRKYETKLPLAGLFQASNALVAAGL 313

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D    I ALS+     GR +R     N     +    Y   P  ++   +VL  
Sbjct: 314 CIAAGEDPGAVIHALSLLKGARGRLERVGAKRNAAEVYV---DYAHTPDGLE---TVLKA 367

Query: 363 ISPHGEGRRIAVLG 376
           + PH +G+ + V G
Sbjct: 368 LRPHTQGKLVVVFG 381


>gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 523

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 151/367 (41%), Gaps = 40/367 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   ++ ++IDSR + P   FFA+ G   DG+ F+  A+ +GA  V V +       S  
Sbjct: 48  PDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVDEAISRGA--VAVISSQARRFRSAK 105

Query: 83  IPVFGVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +    VD+   VL A+++ A         +++ ITG+ GKTT   ++   L+++ + Y C
Sbjct: 106 VAYLTVDNPRLVLAAVSR-AFYDHPDKDLSLVGITGTNGKTTVAYLVKQILANLGQRYGC 164

Query: 140 IGSYNNHIGVPLTLARMPV------------------DVDFGIFELGMSHLGEIRFLTHL 181
           +G+    +G  L    +P                   D +     + +S  G  +F    
Sbjct: 165 LGT----VGYDLVRRTVPSFRTTPESHDLCGLLSQMRDFECRGAVMEVSSHGIDQFRVSG 220

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKA 237
           +   +     +   HL     +E   + K   F G    L K   +  N DD + + L  
Sbjct: 221 LGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGESGPLPKVAVV--NIDDPYGKRL-- 276

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            S       I +FG+++ A F+  + +  SE S            V    +G +   N L
Sbjct: 277 VSEIPEQVAILTFGETEGAAFRASEIELSSEGSEFRFTTPLGDFAVKTSLVGDYNVSNTL 336

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I S L  +++  I+ L  F    GR ++      Q    L+D ++  +  +++ A+
Sbjct: 337 AALTICSGLGLNIENCIEDLDSFPGIPGRMQKVEAG--QAATVLVDYAHTED--ALQNAL 392

Query: 358 SVLSQIS 364
           S+L  ++
Sbjct: 393 SMLQGVT 399


>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 483

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 156/395 (39%), Gaps = 53/395 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA    
Sbjct: 6   LLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121
                +A + SL  P   V  ++ A + +A+ A L ++          +I ITG+ GKTT
Sbjct: 62  -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165
              ++   +         IG+  + +G               +    A M   ++   + 
Sbjct: 116 VSCLVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVM 175

Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           E   +GM+ LG +R    L      V+T I   HL     +EE  +AK + F  L + G 
Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGI 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N D  +       S A  +    S+   + AD++  + K  S  S  ++  QGK   
Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFP 286

Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                IG H   N+L +L +V   L  D    ++ +      +G   R    L   F   
Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ID  Y   P ++     +L Q+ P   GR I V G
Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-YGRLIIVFG 375


>gi|297379937|gb|ADI34824.1| Hypothetical protein HPV225_0748 [Helicobacter pylori v225d]
          Length = 493

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 493

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 30/252 (11%)

Query: 10  LLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           LL+ +  +++ G V    +  + +DSR I    AF  I G   DGHD++  AV+ GA  +
Sbjct: 6   LLECLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAI 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEML 126
             +  ++   G   +P+  V+D   AL  LAV           +I +TG+ GKTT   +L
Sbjct: 66  FTSKPLMKEYG---VPIIQVEDTNRALAMLAVKYYDYPTKHFPLIGVTGTNGKTTVTYLL 122

Query: 127 ---------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMS 170
                          TI +   ++T+  + +  N + +  T   M   DV  GI E+   
Sbjct: 123 DKIFEYHQKKAGVIGTIQVKIGEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIF 224
            L   R   +     IAV T ++  HL     I++   AK+ +F  L      EK     
Sbjct: 183 ALDMGR--VYGCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAI 240

Query: 225 LNYDDSFFELLK 236
           +N DDS   LLK
Sbjct: 241 INDDDSSSHLLK 252


>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 498

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 28/316 (8%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           D++  I+  +I G +P+  VN IS DSR +   + F AIKG   DGH++I   +++GA L
Sbjct: 5   DIIDNIKVKTIYGNLPES-VNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQGAAL 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +     ++ + ++ V    ++    + +A      S    +A+TG+ GKT+   ++ 
Sbjct: 64  VIASRYENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSISTLVH 123

Query: 128 IALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             L ++ ++ A IG+  +  +   P+       DV     ++G      I+ L      H
Sbjct: 124 NMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEASSH 183

Query: 186 -------------IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYD 228
                        +A+ T +   HL     ++  A  K+ +F      L +     LN D
Sbjct: 184 AMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVLNKD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----MEVV 284
           DS+++++   S  L  + I        ADF     KQ  E    +      S     E  
Sbjct: 244 DSYYKVI---SKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGTFECT 300

Query: 285 HHGIGYHMAQNMLMTL 300
            + IG  M  N+L  L
Sbjct: 301 TNYIGDFMVSNVLAAL 316


>gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M04-240196]
          Length = 492

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 141/357 (39%), Gaps = 31/357 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +        +TG+ GKT+  + L  A   + +  A +G+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310
           S++AD ++  +   S+   +E   +    E   H   +G   AQN+   + ++      +
Sbjct: 266 SEHADIRITDFTASSDG--IEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           D  +  L    P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 494

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 106/269 (39%), Gaps = 32/269 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+ I    I    +  +  I  DSR + P   F  I+G   DGH FI  A++KGA  +
Sbjct: 5   DLLEEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIKKGAIAI 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V   DM    G   + V     V+  L       R      +I +TG+ GKT+T  M+  
Sbjct: 65  VAQKDMTGLDGVTWVQVKDTRQVMAQLGS-TFYGRPSQHLELIGVTGTNGKTSTTYMIKK 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDF-GIFE------------------L 167
            L + ++    IG+  N IG     A+   P  +D   IF+                  L
Sbjct: 124 ILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKEMADEKVTECVMEVSSHAL 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +  + E  F        + V T + P HL     I+    AK ++F     T    +N 
Sbjct: 184 ALERVAESEF-------KVGVFTNLTPEHLDFHENIDNYREAKKKLF--YLTTVANVINI 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           DD    ++  +   L   ++ +FG  K A
Sbjct: 235 DDPHGAMIAEEVKKLK-PSLITFGIKKQA 262


>gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 492

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I   + F A +  + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N    
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           S++AD ++  +   S+         W E + + + +       G   AQN+   + ++  
Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D  +  L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P
Sbjct: 319 NGYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374

Query: 366 HG 367
            G
Sbjct: 375 QG 376


>gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 483

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 177/455 (38%), Gaps = 62/455 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  +Q    G V    V  ++ DSR +   + F A KG  YDG+DF   A+  GA 
Sbjct: 3   LKELLHGVQAKIYGKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANGA- 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLR------SKATIIAITGSVGK 119
                   +A   SL  P   V  ++   L +L      +      SK   I +TG+ GK
Sbjct: 62  --------IAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPL---------TLARMPVD-V 160
           TT   ++   L S +K    +G+  + +G          P          T+ R   D V
Sbjct: 114 TTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAV 173

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              +  +G++  G + +         AV+T I   HL      E   +AKA++F  +  +
Sbjct: 174 VMEVSSIGLAS-GRVAYTNF----DTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLVPPS 228

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G + +N D  +       + A     + ++G    AD++    +  S  +   +    + 
Sbjct: 229 GMVVINTDSPYASQCIESAKA----PVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +      IG +   N+L  +  V + L  D++  ++ + +  P  G   R    L     
Sbjct: 285 IACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPG---RLDPVLMGPCP 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID  Y   P ++   ++ L ++ P G GR I V G  C  G+  +S    +A+V+  Y
Sbjct: 342 VYID--YAHTPDALDNVLTGLHELLPEG-GRLIVVFG--CG-GDRDRSKRKLMAQVVERY 395

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
                   GF V+   +          +E  DG +
Sbjct: 396 --------GFAVVTSDNPRSEPPEDIVNEICDGFY 422


>gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 406

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-SYNNHIGVPLTLARMPV 158
           +  R   K T IA+TGS GKT+T   L   LS   +    IG  +N    +   L R+  
Sbjct: 22  ICRRFYDKTTAIAVTGSCGKTSTTHFLGKILSD--RDSCRIGILFNCRKAIIKNLRRVNS 79

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E+G+   G +     L+RP I ++T++   H  NF  +E  A  K ++ E L 
Sbjct: 80  SHRFVLQEVGVEGTGCMNERLPLLRPRIGIVTSVGQDHYCNFRTLEATAFEKGKLIEFLP 139

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LR-KWKQCSEQSWMEV 274
           ++G   LN DD     +  +S A     + ++G  + AD +   +R  W    E+  + V
Sbjct: 140 ESGVAVLNADDPHVLAMARRSKA----RVLTYGLWEEADVRGSDIRCAW---PERLSLAV 192

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             QG+S+ +     G  +A ++L    +   L A +D
Sbjct: 193 TYQGESVRIETGLFGSLLASSILA--AVCGALAAGID 227


>gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
 gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
          Length = 459

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DMLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
          Length = 490

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 152/378 (40%), Gaps = 48/378 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           ++GI  DSR +     F A++G   DGH +I  A++KGA  +V     V    ++ +   
Sbjct: 23  ISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGAAAIVCEEIPVLPDENMQVSES 82

Query: 84  -PVF-GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            PVF  V D   AL K   A          ++ +TG+ GKTT   +L      +      
Sbjct: 83  KPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGKTTIATLLYEMFRKMGHKVGL 142

Query: 140 IGSYNNHIG-----------VPLTL----ARMPVD--VDFGIFELGMSHLGEIRFLTHLV 182
           + +  N+I             P+TL    ARM VD   ++   E+    + + R     +
Sbjct: 143 LSTVCNYIDGEAIPTDHTTPDPVTLHNLMARM-VDAGCEYAFMEVSSHSIDQKRISG--L 199

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
             +  + T +   HL     +E    AK + F+ L  +     N DD       +   AK
Sbjct: 200 SFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPASAFALTNADDKSGLVMLQNTAAK 259

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++T+        ADF+ +  +   E + M V       EV+   +G   A N+L 
Sbjct: 260 KLTYSLRTL--------ADFKGKILESHFEGTEMLVN----GREVMTRFVGRFNAYNLLA 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G    L  D +  +  LS  H   GR +  +  L  G+  ++D  Y   P ++   +S
Sbjct: 308 VYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPL--GYTAIVD--YAHTPDALTNVLS 363

Query: 359 VLSQISPHGEGRRIAVLG 376
            + ++   G GR I V+G
Sbjct: 364 GIHEVL-DGNGRVITVVG 380


>gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK408]
          Length = 459

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DMLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
 gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
          Length = 479

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 60/379 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR + P   F  IKG   DGHDF   A+ KG   ++   D+  +   L     
Sbjct: 21  ITDVSCDSRKLTPNSVFACIKGVQSDGHDFAQAALAKGVPCILCERDLGLNNQLL----- 75

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A  K+          K  ++ +TG+ GKTT   ++   L+ +      IG+  
Sbjct: 76  -VQDTHFAFAKMCANFYGNPAKKLKLVGVTGTNGKTTVTSIIKRVLAGLGCKVGLIGTIQ 134

Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELGMSHLGEIRFL-THLVRPHIA 187
           N IG   +P T            L+ M     ++ I E+    L + R   +H     +A
Sbjct: 135 NEIGDQVIPTTKTTPDAGEFQKILSDMVEAGCEYVIIEVSSHALDQCRLADSHF---EVA 191

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     +E+   AKA++F   +K G I +  DDS+   L  ++H   ++T 
Sbjct: 192 AFTNLTQDHLDYHKDMEDYFQAKAKLFHMCDK-GVICI--DDSYGRRLALEAHC-SLRTF 247

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---------GYHMAQNMLM 298
            +   S +          C  ++ +E+ + G   E+V   +         G    +N L 
Sbjct: 248 SAEDASAS----------CFARN-IEMDITGVRFEMVTGAVISRMQFGTPGLFSVRNALC 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L   +D+ +  ++     +GR +       + F  L D  Y   P  +   ++
Sbjct: 297 AALVCLDLGISLDSVVGGINACGHIKGRSEII--PTGRDFTVLCD--YAHTPDGL---VN 349

Query: 359 VLSQISPH-GEGRRIAVLG 376
           +LS I+ + G+GR +AV G
Sbjct: 350 ILSSINEYKGKGRAVAVFG 368


>gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 515

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 145/388 (37%), Gaps = 52/388 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
           +G ++ IS DSR I     F A++G   DGHDF+  AV +GA  V+       D+   + 
Sbjct: 26  RGSLSMISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVICEEFPGGDVPPGVC 85

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +  P   +     A      A+    +  +I ++G+ GKTTT  ++   L+        
Sbjct: 86  FIKAPDARLALAEAAFALYGGAS---EQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCGY 142

Query: 140 IGSYNNHIG---VPLT------------LARMPVDVDFGIFELGMSHLGEIRFL--THLV 182
           IG+    IG   +PL             L RM   VD G   + M        L   H V
Sbjct: 143 IGTGRAVIGDEEIPLERTTPEAHGLHRLLRRM---VDEGCRAVAMEVSSHALMLQRVHGV 199

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R  +AV T +   HL     +E  ASAK  +F  L   G    N DD      +A   A 
Sbjct: 200 RFRVAVFTNLTVDHLDFHGSMEAYASAKQRLFRQLLPEGRAVFNMDDP-----RAPFMAE 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------------- 288
           G+      G S +   +      C E  W   ++ G+  +  H  +              
Sbjct: 255 GLPPASCSGCSLSGVERRADRSVCGE--WFLAEVTGEDAQSSHLRLSFPDGMFDGELLLP 312

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L+       +      A  +     P +GR +R      +    ++D  Y  
Sbjct: 313 GRFNVMNALLAAATCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGR-VRAIVD--YAH 369

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P +++  +  L+++ P G GR   V G
Sbjct: 370 TPDALQRVLQTLARLKPAG-GRLAVVFG 396


>gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
 gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
          Length = 521

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%)

Query: 17  HSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
            ++G+ P+G        V GI+ DSR++ P + + A+ G  + G DF   A   GA   +
Sbjct: 22  EALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAVAAL 81

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEM 125
            +      + +  +PV  V D  G +   A+AAR+          I ITG+ GKTTT  +
Sbjct: 82  TDPAGAERVLAAGLPVLVVGDPRGRMG--ALAARIYGNPGDDLLQIGITGTSGKTTTAYL 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVP-LTLAR-MPVDVDF----------GIFELGM---S 170
           +   L +   +   IG+    IG   L   R  P   D           G+  + M   S
Sbjct: 140 MEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 199

Query: 171 H---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
           H   LG +  + H     +AV   ++P H+   SG+E+   AKA++F     + G +  N
Sbjct: 200 HALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVV--N 253

Query: 227 YDDSFFELL 235
           +DD +   L
Sbjct: 254 HDDEYGRRL 262


>gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
 gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea]
 gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
          Length = 492

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 162/380 (42%), Gaps = 48/380 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--------MVASIG 79
           NG+S+DSR+I   + F A+ G   DG  FI  A ++GA   +V+TD        +  +  
Sbjct: 20  NGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQGAVAALVHTDEPTEHGQVLSEASA 79

Query: 80  SLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           SL I  F ++  L A+   A      RL+    +I +TG+ GKT+  +++   ++   K 
Sbjct: 80  SLQILFFQLNQELSAIGAQAYPLAPQRLK----LIGVTGTNGKTSITQLMAQLVALQGKQ 135

Query: 137 YACIGSYNNHI-----------GVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLV 182
            + +G+  N +             P+T+A    D D     +  + +S  G I+     V
Sbjct: 136 ASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGADLCAMEVSSHGLIQNRVAAV 195

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-----FFELLKA 237
              +AV T ++  HL     ++    AK  +F+      +  +N DD        E  +A
Sbjct: 196 PFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK-FSSLQSSLINLDDEVGRQWLSEEQEA 254

Query: 238 KSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K     I + ++   S    D  L      +   W E    G++ ++    +G     N+
Sbjct: 255 KHLGFSICSAHADAASIYTQDNHLHHQGVMAMLVWPE----GRA-KLASPLLGSFNLSNL 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  LG + ++  D+   + ++ +  P  GR +R+  A   G   ++D  Y  +P +++ A
Sbjct: 310 VAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTA--NGVTIVVD--YAHSPDAIEQA 365

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L     H EG+   + G
Sbjct: 366 LKAL---RGHCEGQLWCLFG 382


>gi|319957189|ref|YP_004168452.1| mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419593|gb|ADV46703.1| Mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 472

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 87  GVDDVL-GALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           G++ +L GA  + A+  RL+S     ++ +T S GKT+ K  +   L+   +TYA   S 
Sbjct: 132 GIEKMLFGAFRRRAMK-RLKSLPDLKVVGVTASYGKTSIKNFIATLLAQRYRTYATPRSV 190

Query: 144 NNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           N   GV   +   +P + +  + E+G    G+I  +T  V+PH AV+  I PAH+  F  
Sbjct: 191 NTLGGVMKDVNEELPEEAEVYVVEMGARGEGDIAEITRFVQPHYAVVGKIGPAHIEYFKT 250

Query: 203 IEEIASAKAEIFE 215
           +E I + K EI +
Sbjct: 251 LERIRNTKMEILQ 263


>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
 gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
          Length = 509

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 151/364 (41%), Gaps = 40/364 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +S +S +I     F AIKG   DGH +I +A   GA + V     V     + IP  
Sbjct: 25  ISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKNHGAIVAV-----VEDFKEVYIPQI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143
            VD+   +L  LA            +I IT + GKTTT  ML   LS  K     IG+ Y
Sbjct: 80  KVDNTRKSLADLAKNFYKDPSKDLKVIGITATNGKTTTSFMLKKILSENKINTGIIGTVY 139

Query: 144 NN--HIGVPLTLARMPVDVDFG-----IFELGMSHL-------GEIRFLTHLVRPHIAVI 189
                + +P  L   P  ++       + +  +SH+        +     + +   I   
Sbjct: 140 TKFADVNIPSILT-TPESLELQKYFKEMLDKNISHVVMEVSSSAQQMLRVNNIDFDIVSF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++  H+      E     K++I    +K     LN D+ +   LK K+ A  + TI  
Sbjct: 199 GNLSREHIDQHGSFENYFRDKSKIILNAKKGSFALLNMDNEYIASLKEKTKA-SVLTISM 257

Query: 250 FGKSKNADFQLRKWKQCS---------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             ++ ++DF + K    +          +   E+ L+ +S EV    +GY    N ++ +
Sbjct: 258 --ENLDSDFGISKLDLSTGFGKFMFHVNRDIKEINLKKQSFEVEMGSVGYASVMNGVIAI 315

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  IL  D +  + AL  F   +G  +R+    ++ F  L D  + AN  ++   ++ L
Sbjct: 316 SLALILQVDKNIILNALENF---KGVERRFELIYDEKFKVLDD--HFANEKNIDVTMTTL 370

Query: 361 SQIS 364
           SQ++
Sbjct: 371 SQMN 374


>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 485

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 113/277 (40%), Gaps = 36/277 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR +     FF I G   DGHDF   AV+KGA  VV    +     +L +PV  V 
Sbjct: 26  LEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGAVAVVAERPL-----ALDVPVVIVR 80

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   A+ +LA         +  +I +TG+ GKT+   +L        +    IG+    I
Sbjct: 81  DTKRAMARLASHFYGEPTKRLQLIGVTGTNGKTSVTHILDTMFREAGQKTGLIGTLYTKI 140

Query: 148 G---------VPLTL-------ARMPVDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVI 189
           G          P +L       + +   V+  + E+     HLG +R   +     IAV 
Sbjct: 141 GDETIETRNTTPESLVLQQRFASMVNKQVETAVMEVSSHALHLGRVRGCDY----DIAVF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHALGIKT 246
           T + P H+     +E    AK+ +F  L  T    T  +N DD   + L   + A     
Sbjct: 197 TNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTAVINSDDPASDRLIQMTTA----D 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           + ++G  K AD      K  +  +   + + G+  +V
Sbjct: 253 VVTYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDV 289


>gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           chlorochromatii CaD3]
 gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 516

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 156/381 (40%), Gaps = 46/381 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           +  +S DSR +     F A++G   DGH FI  A+++GA ++V   ++  SI  G L + 
Sbjct: 43  ITAVSSDSRDMIEGALFVAVRGFCTDGHRFIESAIERGACIIVCE-ELPQSITHGCLYLR 101

Query: 85  VFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V      L  +  L     A +LR     I +TG+ GKTTT  ++T  L++       IG
Sbjct: 102 VIDARKALAHVAALFYGNPAKQLR----FIGVTGTNGKTTTSRIITEMLTAFAVPSGYIG 157

Query: 142 SYNNHIG---VPLTL---------ARMPVDVDFGIFELGMSHLGEIRFLTHL--VRPHIA 187
           +    IG   +PL           A   + V+ G   + M        L  +  +R   A
Sbjct: 158 TNLCRIGKRDIPLERTTPEAHELHALFALMVEAGCKAVVMEVSSHALLLQRVYGLRFDAA 217

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--------- 238
           + T +   HL     ++  A AK  +F+ L+  G   +N DD++  L+  +         
Sbjct: 218 LFTNLTQDHLDFHHTMQAYAEAKQLLFDQLQPDGVAIVNTDDAYAPLMLQRVAPSQRVCC 277

Query: 239 ---SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294
              ++   +     +G+    DFQ          + ME++      E++  G+ G +   
Sbjct: 278 TLQANVPSVLQCPQYGQ----DFQAEVRHASLAATEMELRFPKGETELLTVGLAGSYNVM 333

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L        L        +AL+  H  +GR +R     N  +   +D  Y   P +++
Sbjct: 334 NVLQAAATGYCLGLQPAAICRALAAVHSVDGRMERVG-RPNLPYQIFVD--YAHTPDALQ 390

Query: 355 AAISVLSQISPHGEGRRIAVL 375
            A+  L  +   GE  R+ VL
Sbjct: 391 KALETLKALK--GEEARLMVL 409


>gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           sanguinis SK36]
 gi|158513223|sp|A3CLN5|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Streptococcus sanguinis SK36]
          Length = 450

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 162 DMLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 218 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 263 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 307


>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 486

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G+ IDSR     + +F ++G  +DGH+FI   + KGA   +V++  V  +    
Sbjct: 11  PDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAK-CIVHSKPVEHMKK-G 68

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML-------------- 126
           I    V++V   LN++A            +  +TG+ GK+T   ++              
Sbjct: 69  IAYIQVENVNRTLNRVASLFYGHPSRNMKVFGVTGTNGKSTITSIIKDVYSHFAPCGYIG 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           TI++S  + T     +  + I +  T+  M VD       L +S  G        V   +
Sbjct: 129 TISISYGEVTLPPSLTTPDAILIHKTMKDM-VDAGMQAVALEVSSHGLELGRVQSVDFDV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV + +   HL     IE    AK ++F  L+K G   LN DD++ + L   + A     
Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKDGVAVLNADDAYVDQLADATDA----R 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G   +A +Q    +         ++  G    +VH G  Y +  N++    I ++L
Sbjct: 244 VVTYGIDHHASYQAENIR---------IEKTGSRFTLVHDGEHYEVVTNLVALYNIYNLL 294

Query: 307 TADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            A    A   + +          ++  G+  R    Q F  ++D  +   P  M+     
Sbjct: 295 GAVAAMAESGIPIAKQLPYLNEIRQIEGRMERIDEGQLFNVIVD--FAHTPDGMEKVFEY 352

Query: 360 LSQISPHGEGRRIAVLG 376
              I+  G    IAV G
Sbjct: 353 AKDITEEGHS-IIAVFG 368


>gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 7169]
 gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 12P80B1]
          Length = 520

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84
           +DSR I   + F  +K    D        +  L +V+  A  V+   D+V   +  + IP
Sbjct: 46  LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105

Query: 85  VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +  V ++   L  L +AARL+     +   IIA+TG+ GKTT  +++     +   + A 
Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164

Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N  +G  +  A    DV                +  L  S  G  ++    V   
Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241
            A+ T ++  HL   + +     AKA++F+       + G + L+ + + F+   A    
Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYETADFQI 284

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G    YS  K  NADF  +  +   +   +EVQ     M  +   +G     N+L ++ 
Sbjct: 285 IG----YSQQKP-NADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLASMA 339

Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + L     AD+   I  L     +  RG+  R +   G F +ID  Y   P ++K   
Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VLS +  H  GR IAV G
Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407


>gi|163790758|ref|ZP_02185184.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
 gi|159873938|gb|EDP68016.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
          Length = 442

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 122/296 (41%), Gaps = 48/296 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TGS GKT+T  +L   LSS+K T   IG    H GVP        D DF I E    
Sbjct: 107 VAVTGSHGKTSTTGLLAHVLSSLKDTSYLIGDGTGH-GVP--------DADFFILE---- 153

Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E R  FL +  RP  A++T I   H   +S I+++ +A   +   ++K   I    D
Sbjct: 154 -ACEYRRHFLAY--RPDYAIMTNIDFDHPDYYSSIDDVFNAFQSMAVQVKK--AIVACGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-- 286
           D   + ++A    L     Y FG     DFQ +   + +  S  +V ++    E   H  
Sbjct: 209 DEQLQKIQANVPIL----YYGFGDHN--DFQAKNMTRSTTGSTFDVYVRD---EFYGHFD 259

Query: 287 --GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + I      D +  ++ L  F     +G + R    Q    +I +
Sbjct: 260 IPTFGKHNILNALSVIAICQYENIDKEGVMENLKTF-----KGVKRRFTEKQILDMVIID 314

Query: 345 SYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            Y  +P+ ++A I    Q            PH   R +A+L D  E   L+ S ++
Sbjct: 315 DYAHHPSEIRATIDAARQKYPDKEIIAIFQPHTFTRTVALLSDFAESLNLADSIYL 370


>gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
 gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
          Length = 487

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 145/372 (38%), Gaps = 36/372 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F A+ G   DG +FI  A+ +GA  V+   D +A+  +    + 
Sbjct: 20  VTGVTADSRKVGPGTLFCALPGTARDGREFIPQALSQGAAAVLAPEDTLATASN----IL 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
              DV  A    A A       T +AITG+ GKT+         + +    A +G+    
Sbjct: 76  TTYDVRRAYALAAKAFYGAQPKTCVAITGTNGKTSVATFCRQMFAHMGYHSASVGTLGIV 135

Query: 145 ------NHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPH-------- 185
                  H   P  L   P   D       +   G++HL  +   +H +           
Sbjct: 136 TQNGAAEHAITPPGLT-TPDAADIAEHLASLARDGVTHLA-LEASSHGIDQRRLDGVTLT 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGI 244
            A  T +   HL   + +E   +AK  +FE L   G +  LN D   +    A +   G 
Sbjct: 194 AAGFTNLTQDHLDYHATMEAYRAAKLRLFEQLLPRGRVAVLNADSDAYNAFAASAITAG- 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ S G+ +     L       +   + ++ QG+  EV     G   A N L+  G+  
Sbjct: 253 ASLLSVGE-RGQHLTLTHRDLTVDGQILYLEHQGRKFEVKLKLAGLFQASNALVAAGLCL 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +  ++AL+      GR +R     N G    +D  Y   P  ++   +VL  + 
Sbjct: 312 AAGQKAEPVLEALTHLTGARGRLERVGSTGN-GAEIYVD--YAHTPDGLE---TVLKALR 365

Query: 365 PHGEGRRIAVLG 376
           PH +GR + V G
Sbjct: 366 PHTQGRLVCVFG 377


>gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 488

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 41/373 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ + +DSR       FF +KG   DGH F   AV+ GA  VV + D+    G + I   
Sbjct: 15  IDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDVIEGIVYIR-- 72

Query: 87  GVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIA--LSSIKKTYACIG 141
            VDDV+  L+++       S +T   +  ITG+ GK+TT  MLT+   L         IG
Sbjct: 73  -VDDVMTELHRVT-DVFYNSPSTNMYVYGITGTNGKSTT--MLTVRNILRRFGVNAGYIG 128

Query: 142 S----YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF----------LTHLVRPHIA 187
           +    YN H   P       V++   + ++ +  + E+                +    A
Sbjct: 129 TISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVESIDFDNA 188

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     +E    AK  +F+ L+ +G + LN D+ + E+L+ + ++     +
Sbjct: 189 SFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPSGFMVLNIDNEYGEILQNQDYS----NV 244

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            ++G   N     R       + + E  L  +GK+  VV + +      NML  + I+  
Sbjct: 245 VTYG-VDNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNVIAILHQ 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQI 363
               ++  I  L      +GR    +  +N+G  F  ++D  +   P SMK     +   
Sbjct: 304 RGYALEKIIPELKDIEHVDGR----QTMVNKGQPFRVIVD--FGHAPDSMKNVYEFVRST 357

Query: 364 SPHGEGRRIAVLG 376
              G  R I V G
Sbjct: 358 QDEG-ARLITVFG 369


>gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
 gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
          Length = 500

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 42/312 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-----------MV 75
           +N +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D             
Sbjct: 20  LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFA 79

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            +  + +  V  V ++   L+ +A A       K T++ ITG+ GKTTT ++     + +
Sbjct: 80  KNHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLL 139

Query: 134 KKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFELGMSHLGEIRF 177
               A +G+  N +           G  + + R     + +  DF   E+    L + R 
Sbjct: 140 GGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYR- 198

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLK 236
               +   +A+ T ++  HL   + +EE A AK  +F  L     + +N DD    E L 
Sbjct: 199 -AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV-INADDEIGREWLA 256

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               A+ + T   F        Q  +W +      ++  LQG ++EV        +   +
Sbjct: 257 KLPEAVAVSTDSQFQP------QQARWVKAKA---VQFTLQGATIEVESSWGNGELKSRL 307

Query: 297 LMTLGIVSILTA 308
           +    + ++LTA
Sbjct: 308 IGAFNVSNLLTA 319


>gi|257865983|ref|ZP_05645636.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257872316|ref|ZP_05651969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257875610|ref|ZP_05655263.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
 gi|257799917|gb|EEV28969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257806480|gb|EEV35302.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257809776|gb|EEV38596.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
          Length = 444

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 129/301 (42%), Gaps = 44/301 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS I+ T   IG    H G P        D +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIGDGTGH-GEP--------DAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   F  IE++ SA   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYFHSIEDVFSAFQSMASQVKK--GIFAF 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD +   L+A         IY +G + N D Q +  ++ ++ S  +V + G+++   V 
Sbjct: 208 GDDEYLRKLEADV------PIYYYGVNDNDDVQAKNIERTTQGSEFDVFIHGENIGHFVL 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D+      +  F    G  +R+   +     T++D+ 
Sbjct: 262 PAFGQHNINNALSVIAVAYKEGLDMKEVAAEMISF---PGVKRRFSEKIVAD-MTIVDD- 316

Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   H+ L ++
Sbjct: 317 YAHHPAEIKATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDLAD--HVYLCDI 374

Query: 396 L 396
            
Sbjct: 375 F 375


>gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola]
          Length = 292

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 23/234 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I   PQ   + +S+DSR +  ++ F AIKG   DG+DFI  AV+K    ++  T      
Sbjct: 14  IKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKKH 73

Query: 79  GSL----SIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSS 132
           G +    +IP+     +   ++ LA         T  II +TG+ GKTT  +++      
Sbjct: 74  GEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSEL 133

Query: 133 IKKTYACIGSYNN--HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----- 185
           + K  A +G+  N  +  +  T       +D   F L ++   +I  +T  V  H     
Sbjct: 134 LGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSF-LHIAAKKKINLVTMEVSSHGLVQN 192

Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                   I + T +   HL     +++  SAK   F    K   I LN +D +
Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ-HKIKKIILNANDKY 245


>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 484

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 27/297 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  DSR+      F AIKG   DG D+I  A+++GA  V+V+ ++  SI    I + 
Sbjct: 23  IRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERGAVAVLVDGEI--SIDK-DITLI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   +L K+A         +  +I +TG+ GKT+   M+   L S       IG+  
Sbjct: 80  KVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSVTYMIKSILESQNNKVGLIGTIQ 139

Query: 145 NHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
           N IG  V  T    P  +D   +   M   G ++++   V  H             IAV 
Sbjct: 140 NMIGDKVYPTERTTPESLDLQRYLRLMVDEG-VKYVVMEVSSHSLALNRVDECDFDIAVF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +++ A+AKA++F  + KT  + +N DD +  L+   S+A     + +
Sbjct: 199 TNLTQDHLDFHKTMDDYANAKAKLFR-MAKTACV-INIDDDYSSLIIENSNA----KVVT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +G    A    +  K   + +   VQ++    ++     G     N L  + +  IL
Sbjct: 253 YGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALKIPGLFSVYNSLAAISVAFIL 309


>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
 gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
          Length = 490

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 150/377 (39%), Gaps = 46/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           ++GI  DSR +     F A++G   DGHD+I  A+ KGA  +V       S   + +   
Sbjct: 23  ISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGAAAIVCEEIPALSDEDIQVSES 82

Query: 84  -PVF-GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            PVF  V D   AL K   A          ++ +TG+ GKTT   +L      +      
Sbjct: 83  KPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGKTTIATLLYEMFRKMGHKVGL 142

Query: 140 IGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + +  N+I             P+TL    ARM     ++   E+    + + R     + 
Sbjct: 143 LSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAGCEYAFMEVSSHSIDQKRISG--LS 200

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239
            +  + T +   HL     +E    AK + F+ L  +     N DD       +   A+ 
Sbjct: 201 FNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPTSAFALTNADDKAGLVMLQNTAARK 260

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               ++T+        ADF+ +  +   E + M V       EV+   +G   A N+L  
Sbjct: 261 LTYSLRTL--------ADFKGKILESHFEGTEMLVN----GREVMTRFVGRFNAYNLLAV 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G    L  D +  +  LS  H   GR +  +    +G+  ++D  Y   P ++   ++ 
Sbjct: 309 YGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSP--KGYTAIVD--YAHTPDALTNVLNS 364

Query: 360 LSQISPHGEGRRIAVLG 376
           + ++  +G GR I V+G
Sbjct: 365 IHEVL-NGNGRVITVVG 380


>gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
 gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
          Length = 466

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 162/407 (39%), Gaps = 47/407 (11%)

Query: 61  VQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +Q G  L V       + +    +    IP+    D+LG +        +++ AT I + 
Sbjct: 66  IQDGVELCVYTAAISEDNEEFQEVKRRGIPMMTRADLLGRI--------MQNYATAINVA 117

Query: 115 GSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M+  I + + K     +G     IG  L +         G  ++ ++   
Sbjct: 118 GTHGKTTTTSMIGEILMEAAKDPTITVGGMMKDIGGNLRV---------GQSDIFLAEAC 168

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H   P IAVI  +   HL  F  I EI  +     E L + G + +N D   +E
Sbjct: 169 EYTNSFHSFFPSIAVILNVEADHLDFFKDINEIRDSFKTFIERLPEDGLVVINKDIPHYE 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                   LG + I +FG   +AD+      +   +  S+   +      +V     G H
Sbjct: 229 YFLED---LGGRKIITFGHG-DADYTANFISYDHYARPSFTLFEHGEDRGKVTLSVTGEH 284

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L    +   +AL  F    G  +R++       FT+ID+ Y  +P 
Sbjct: 285 NIYNSLSAIAVARYLGISFEDIKEALHRF---SGTDRRFQRKGKINGFTIIDD-YAHHPQ 340

Query: 352 SMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + A I+   +           PH   R  A++ D    G L+Q+  I LA++ +    +
Sbjct: 341 EIAATIAAAQKYPHRKLWIVFQPHTYSRTKALMEDFA--GALAQADEIILADIYAAREKN 398

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V +S   +  L   L ++ +V+Y      +  +I   + +GD+++ 
Sbjct: 399 TVGISSDDLRKL--MLSQNTNVYYIPDFPSIEKYILEHVKEGDLLIT 443


>gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 497

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 23/234 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I   PQ   + +S+DSR +  ++ F AIKG   DG+DFI  AV+K    ++  T      
Sbjct: 14  IKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKKH 73

Query: 79  GSL----SIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSS 132
           G +    +IP+     +   ++ LA         T  II +TG+ GKTT  +++      
Sbjct: 74  GEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSEL 133

Query: 133 IKKTYACIGSYNN--HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----- 185
           + K  A +G+  N  +  +  T       +D   F L ++   +I  +T  V  H     
Sbjct: 134 LGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSF-LHIAAKKKINLVTMEVSSHGLVQN 192

Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                   I + T +   HL     +++  SAK   F    K   I LN +D +
Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ-HKIKKIILNANDKY 245


>gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
 gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
          Length = 477

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 162/389 (41%), Gaps = 39/389 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +F D++  I            +  ++ DSR +     F AIKG   DGHD+I  A++K
Sbjct: 1   MISFEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+ L++   D+    G   I V      L  ++ L +      K  ++A+TGS GKTTT 
Sbjct: 61  GSSLIIHTADIKREEGISYIKVTDPRKTLAQISNL-IYDFPSKKMDLVAVTGSNGKTTTS 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVD---------VDFGIFELGM-- 169
            +++  +  I    A IG+ N  +G   +P +     +          +D  I  L +  
Sbjct: 120 RLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLALEA 179

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + + L  L   +  + T ++  HL     ++    AK  +FE  +   T   N D
Sbjct: 180 SSHGLDQKRLYGLDISY-GIFTNLSEEHLDYHKTMDNYFKAKMILFENAK---TTIANID 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + +    K+  L   T+      KNAD++    ++  E   +  +++G   E V   I
Sbjct: 236 DPYGK----KAKELFSNTVTFAIDEKNADYRAEDIRK--EDGKISFKIKG--CEFVIRKI 287

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYN 347
             +   N L     ++ + A ++    A   F   +G   R+    N  G   ++D  + 
Sbjct: 288 ANYEIYNTLAACACLNQMGASMEEIAAAYKKF---KGVKSRFEYIENDLGINIILD--FA 342

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P + +A    L +  P G  ++IAV G
Sbjct: 343 HTPRAYEA----LFESVPEG-AKKIAVFG 366


>gi|317014152|gb|ADU81588.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori
           Gambia94/24]
          Length = 493

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
 gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
          Length = 487

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 35/369 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S DSR +AP  AF A+ G   DG  FI  AV +GA +V+       +      P+ 
Sbjct: 27  ITGLSADSRKVAPGMAFVAVAGTKADGASFIADAVSRGASVVIAGNGAAVT----GAPLL 82

Query: 87  GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTT----TKEMLTIA--LSSIKKTY 137
            VD+       LAVAA     +   T++A+TG+ GKT+    T+++   A   +++  T 
Sbjct: 83  TVDE---PRRFLAVAASRFYGKQPETMVAVTGTAGKTSVASFTRQIWAYAGHPAAMIGTT 139

Query: 138 ACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIAVI 189
             +    N  G      P++L ++   + D G+    M  S  G  +F    VR   A  
Sbjct: 140 GVVSPTRNDYGSLTTPDPVSLHQLLAALADEGVTHAAMEASSHGLDQFRLDGVRLAAAAF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIY 248
           T +   H+     +E+  +AK  +F  L   G+  + + DD + E   A +   G + I 
Sbjct: 200 TNLGRDHMDYHPTVEDYMAAKMRLFRDLLPKGSPAVIFADDPWSEQAIAAARDTG-QDIR 258

Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           + G  +  DF  L++ +    +   EV +     E+     G     N L+  G+     
Sbjct: 259 TVG--RKGDFLALKRVEHFRHKQIAEVHIGDDIFEIHIPLAGDFQVANALVAAGLAISTG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                A+ AL       GR        + G    +D  Y   P +++   +VL+ + P  
Sbjct: 317 VAAPVAMAALEKLVGAAGR-LELVGHTHDGALAYVD--YAHKPDALE---NVLTSVRPFT 370

Query: 368 EGRRIAVLG 376
            GR I V G
Sbjct: 371 TGRIIVVFG 379


>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
 gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
          Length = 483

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 144/373 (38%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++IDSR I     F AI+G   DGH FI  A++ GA  V+   + +    S  +   
Sbjct: 23  ITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELGADAVLC--EELPEKLSDHVTYV 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+    A+ K+A         K  ++ +TG+ GKTT   +L             + +  
Sbjct: 81  QVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVC 140

Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELG-----MSHLGEIRFLTHLVR 183
           N+I    VP              LA+M     ++   E          +G ++F   L  
Sbjct: 141 NYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGGL-- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   HL      E   +AK   F+GL K      N DD    ++   + A  
Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDKNGMIMVQNTKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T+ ++     ADF+ R  +   E  ++E+       EV    IG     N+L   G  
Sbjct: 252 --TVKTYSIRSMADFRARILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGAA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  LS  H   GR +       +GF  ++D  Y   P ++   ++ + ++
Sbjct: 306 IMLGKKPEDILLVLSTLHSVSGRLEPIHSP--EGFTAIVD--YAHTPDALANVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
              G+G  I V G
Sbjct: 362 LD-GKGHVITVCG 373


>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
           [Alistipes shahii WAL 8301]
          Length = 484

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 160/395 (40%), Gaps = 30/395 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  DSR++ P + FFA+ G   DGHD+I  AV+KGA  +V       +   ++  + 
Sbjct: 24  IGGLVYDSRAVKPGDCFFAVPGTQSDGHDYIPIAVEKGAAAIVCERMPADAAEGVAYVLV 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G      A    A       +  ++ ITG+ GKTTT  +L   + ++      I +    
Sbjct: 84  GDSAGAMADMAAAFYDYPSRELKLVGITGTNGKTTTATLLYDLVRAMGYKAGLISTVVYK 143

Query: 147 IG---VPLT-----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           I    V  T           + R   D       +  S    ++  T  +     + + I
Sbjct: 144 IDGREVEATHTTPDSIRLNAMMREMADAGCAYCFMECSSHAIVQERTRGLDFAGGIFSNI 203

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL       E   AK   F+GL K      N DD    ++   + A     + ++  
Sbjct: 204 THDHLDYHKTFAEYIRAKKLFFDGLPKGAFALTNADDRNGRVMVQNTAA----AVSAYSL 259

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              ADF+ +  +       M +++ G+ + V    +G   A N+L   G  ++L  +   
Sbjct: 260 RAMADFRCKIVEM--HLDGMLLRIDGQELWVGL--LGRFNAYNLLAVYGAAALLGLNRGE 315

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++ LS+ H   GR ++ R A   G   ++D  Y   P +++  I  + +I   G+ + I
Sbjct: 316 VLRVLSMLHAVSGRFEKIRAA--NGTTAIVD--YAHTPDALENVIQTIEEIRTPGQ-QLI 370

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            V G  C  G+  ++   ++A +   Y  + V+ S
Sbjct: 371 VVCG--CG-GDRDRTKRPEMAAIAVKYATTAVFTS 402


>gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. 1-1C]
          Length = 484

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 146/371 (39%), Gaps = 36/371 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR + P   F A+KG   DG  ++  A+Q+GA +++ + + V    +LSIPV 
Sbjct: 21  ITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLSIPVI 78

Query: 87  GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VL A +KLA+AA         T++A+TG+ GKT+    +      I    A IG+ 
Sbjct: 79  ---HVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGTV 135

Query: 144 ------NNHIGV-----PLTLARMPVDV--DFGI----FELGMSHLGEIRFL-THLVRPH 185
                  + IG      P+ L R+  ++  D G+    FE     L + R    HL    
Sbjct: 136 GVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLA--- 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A  T +   H+     IE    AK  +F  L       L + D  +      +     +
Sbjct: 193 AAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHR 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G++      L + +    +  +E ++            G     N LM  G+   
Sbjct: 253 QVLTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A  D   ++L      +G   R     N      I   Y   P +++    +L  + P
Sbjct: 312 TNAPSDMVFRSLEKL---QGAPGRLELVGNTEDGAPIYVDYAHKPEALE---QMLLSVRP 365

Query: 366 HGEGRRIAVLG 376
             +GR + V G
Sbjct: 366 FTQGRLVLVFG 376


>gi|317489847|ref|ZP_07948342.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA]
 gi|316911052|gb|EFV32666.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA]
          Length = 173

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL+   P+ GR +  R    +G FT+++++YNANP SM+A+++    +     G+ +AV
Sbjct: 23  DALAHAEPEAGRQEVLRA---RGGFTVVNDAYNANPDSMRASLATFCALDV--PGKHVAV 77

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETM 430
           LGDM E+G  + + H  + E  +   +  +   G   L + DA  R+      +  + ++
Sbjct: 78  LGDMGELGSYAPACHAGIGEFAATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSL 137

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +F  + + +  GD V+VK+S+  G  R++  L+
Sbjct: 138 SEVFGDLDACVEPGDAVLVKASHFMGLTRVVEGLV 172


>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
           DP4]
 gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 38/315 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  LL    G     +PQ     I  DSR + P + F A+ G   DG  FI  AV +GA
Sbjct: 7   TFDTLL----GRVAATLPQ-----IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122
            +VV   D +  +   +  V   DD   AL  L   AR  + +    ++ +TG+ GKTT 
Sbjct: 58  TMVVCRADGLQHLPEAAFAVAVHDDPRAALGALG-QARYGTASLPFPVVGVTGTNGKTTI 116

Query: 123 KEMLTIALSSIKKTYACIGS----YNNHI-GVPLT----------LARMP-VDVDFGIFE 166
             +L    +S  +    +G+    +  H+   PLT          L +M    VD    E
Sbjct: 117 TYLLEHLFASAGRRCGVLGTVSYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225
           +    L + R     +R   AV+T +   HL     +E   +AKA +F  L E +    +
Sbjct: 177 VSSHALDQERVAG--IRFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAV 234

Query: 226 NYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQS-WMEVQLQGKSME 282
           N DD +   LL     A+G       G   +    L  +  +CS     + +  +G++ E
Sbjct: 235 NADDPWGRRLLADLPGAVGFALT---GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWE 291

Query: 283 VVHHGIGYHMAQNML 297
           V    +G H A N+L
Sbjct: 292 VDSPLVGAHNASNLL 306


>gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
 gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
          Length = 482

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 162/366 (44%), Gaps = 37/366 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+++S+ +     FFAIKG  +DGH+FI  A ++GA  VVV   +     S  +PV 
Sbjct: 23  VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPV-----SSKVPVI 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D   AL K A     +   +  +I ITG+ GKTTT  ++   L    +    IG+  
Sbjct: 78  IVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIY 137

Query: 145 NHIGVPL--TLARMPVDVDF-----GIFELGMSH-LGEI------RFLTHLVRPHIAVIT 190
             +G  +  +    P  + +       +ELG  + + EI      ++  +  R    + T
Sbjct: 138 YRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRFEAVLFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E+  ++KA++F   E    I +N DD++ + L   +H      I ++
Sbjct: 198 NLSQDHLDYHKTMEDYFASKAKLFTEYESKVKI-INADDTYGKRLLKITHG----EIITY 252

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  K  D ++  ++     S + +  +GK  E   + IG   A N+   +        + 
Sbjct: 253 G--KKGDLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALWKGIEP 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +AL   +       R+    +  F  +ID  Y   P +++  +    ++S   +G+
Sbjct: 311 DLIQRALKCVNVP----GRFEVVHSDKFTVIID--YAHTPDAVENVLRTARKLS---KGK 361

Query: 371 RIAVLG 376
            I+V G
Sbjct: 362 LISVFG 367


>gi|261838027|gb|ACX97793.1| UDP-MurNac-pentapeptide synthetase [Helicobacter pylori 51]
          Length = 493

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    YA   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|217033769|ref|ZP_03439195.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
 gi|216943818|gb|EEC23258.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
          Length = 493

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    YA   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 461

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 30/285 (10%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138
           L IPV    ++L         A L +K   IAI G+ GKTTT  M+++ L  + +  T+ 
Sbjct: 88  LGIPVIKRGEML---------ALLSNKYRGIAIAGAHGKTTTTSMISLVLEDNGLDPTFI 138

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G           + R  V+   G  EL ++   E       + PH+AV+T +   HL 
Sbjct: 139 IGGQ----------MQRSLVNAKLGRGELFVAEADESDASFLRLHPHVAVVTNVEDDHLD 188

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            +   E I SA  +    +   G   L   D F   LK KS A   + +Y +G   N+D+
Sbjct: 189 YYQSEENIRSAFQQFVNQVLPEGFAVLFSGDRFLAGLKQKSRA---RLVY-YGFDDNSDY 244

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             R+ + C   S  +   +G+ +  V+  + G H   N +  + +   +  + +   +AL
Sbjct: 245 FCREIRACGIGSAFKAYCRGQMLGDVYLKVPGIHNVLNAMAAIAVGCEVGVNFEGITRAL 304

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             F    G  +R+         T+ID+ Y  +P  +KA I    Q
Sbjct: 305 GGFL---GAKRRFEVVGKLNGITVIDD-YAHHPTEIKATILAARQ 345


>gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
 gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
          Length = 483

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 169/435 (38%), Gaps = 70/435 (16%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I+    G V    V  ++ DSR++   + F A KG  +DG+DF   A++ G
Sbjct: 1   MNLKELLNNIEAKIYGKVSPIEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGS 116
           A         +A   S+  P   V  ++ + N   + A L +K          I+ +TG+
Sbjct: 61  A---------IAIASSIYNPFLSVVQIVSS-NLPQLEAELSAKYYNYPSKKLCIVGVTGT 110

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSY-----NNHIGVPLT----------LARMPVD-- 159
            GKTT   ++        K    IG+      NN I    T          LA M  +  
Sbjct: 111 NGKTTVSHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRL 170

Query: 160 ----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               ++     L +  L E+ F        + V+T I   HL      EE  +AK ++F 
Sbjct: 171 TSAVMEVSSVGLVLERLAEVDF-------DVGVLTNITLDHLDFHGSFEEYINAKLKLFS 223

Query: 216 GLEKTGTIFLN----YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            L  TG   +N    Y   F E+ +A+    GI+          AD++    +     + 
Sbjct: 224 KLPATGLAVVNGDLSYASRFLEMTQAQPITYGIEC--------PADYRAMHLRSSPFGTD 275

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIK-ALSVFHPKEGRGKR 329
            ++  +G+S+      IG H   N+L  + +       D+   I  A +V  P   RG R
Sbjct: 276 FDLVYRGESLPCRLPLIGKHNVYNILAAIAVAHQHCNGDLQQLISLAANVESP---RG-R 331

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +      ID  Y   P +++     L  + P  +G+ I V G  C  G+  QS  
Sbjct: 332 LEPVFSGPCPIYID--YAHTPDALENVCKTLHALLPE-QGKLIVVFG--CG-GDRDQSKR 385

Query: 390 IDLAEVLSLYNISHV 404
             +AEV+  Y  + V
Sbjct: 386 QIMAEVVERYGFAVV 400


>gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
 gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
          Length = 489

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 162/381 (42%), Gaps = 48/381 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP   +  +  DSR   P   FF +KG   DGH+ I  A+  GA +V+V+++ +  I   
Sbjct: 10  VPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGA-IVIVHSEPIEKINP- 67

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            I    V DV+   N++A +         T+  +TG+ GK++   ++   L+ I+ T A 
Sbjct: 68  DITYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRNILNQIEPT-AY 126

Query: 140 IGS----YNNHIGVPLTLARMPVD---------VDFGI----FELGMSHLGEIRFLTHLV 182
           +G+    YNN + +P  +A   +D         VD GI    +E     + + R     +
Sbjct: 127 VGTISIEYNN-VKLPPLVASPNIDEVHGILRDMVDAGIKNCAYEASSIAIDQGRL--DAI 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +A+ T +   HL     +    +AK ++F+ L++     +N DD     +   + A 
Sbjct: 184 DFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQLKEEAIAIVNVDDPSGMKIVQDTQA- 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               ++++G    AD+++  +    + +   + +             Y +  N++    I
Sbjct: 243 ---KVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDHD---------YRLETNLIARFNI 290

Query: 303 VSILTADVDTAIKALS-------VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +++ A      K +S       + H  +  G+  R    Q F  ++D ++ A+   ++ 
Sbjct: 291 YNLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERIQDGQPFNLIVDFAHTAD--GIEK 348

Query: 356 AISVLSQISPHGEGRRIAVLG 376
                S I+P  + R IA+ G
Sbjct: 349 VCQYASSITP-KDCRIIAITG 368


>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei
           VT8]
 gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter aquaeolei VT8]
          Length = 494

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 150/374 (40%), Gaps = 40/374 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLS 82
           ++G+  DSR + P +AF A+ G       ++  A+  GA  +++ ++         G+L 
Sbjct: 24  IHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESEQERQCHERHGALI 83

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV G+   LG +         R    +I +TG+ GKT+  + ++  L         +G+
Sbjct: 84  VPVVGLRARLGRIADRFFEHPSR-HLRVIGVTGTNGKTSVTQYISQLLRETGTPCGLLGT 142

Query: 143 YNNHIGVPLTLARMP------VDVDF------------GIFELGMSHL--GEIRFLTHLV 182
                G+P ++          V V+              + E+    L  G +  LT   
Sbjct: 143 LG--YGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDNLTMTG 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               AV T +   HL     +E    AKA +F   E   ++ +N+DD F   L  +    
Sbjct: 201 ----AVFTNLTRDHLDYHGSMEAYGEAKARLFLREELHFSV-INFDDPFGRQLYGQLEGQ 255

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  YS  +++  +  L+++   +      V  Q    ++    +G   A N+L  L  
Sbjct: 256 CDRVRYSLHEAQT-ELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAALAT 314

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L   V+ A+  +    P  GR +R+  +   G   ++D  Y   P ++  A+  L  
Sbjct: 315 VLTLGVPVERAVSVVRELSPPPGRLERFTGST--GKHVVVD--YAHTPDALANALEAL-- 368

Query: 363 ISPHGEGRRIAVLG 376
             PH  GR I V G
Sbjct: 369 -RPHTRGRLICVFG 381


>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
 gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
          Length = 498

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 33/307 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G +P+  VN IS DSR I   + F AIKG   DGH++I   +++GA LV+ +     +I 
Sbjct: 17  GKLPKS-VNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQGAALVIASRYEDYNIE 75

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           + ++ V    ++    + +A A         +A+TG+ GKT+   ++   L ++ ++ A 
Sbjct: 76  NCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSISTLVHNMLRNLDESSAF 135

Query: 140 IGS--YNNHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRF----------LTHLVRP 184
           IG+  +  +   P+       DV      I EL   ++  + F            + V  
Sbjct: 136 IGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIKNLAFEASSHAMALGRIYNVDI 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-------LNYDDSFFELLKA 237
            +A+ T +   HL     ++  A  K+ +F  L   G  F       LN DD ++ ++  
Sbjct: 196 DVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTL---GNNFSEAKYGVLNKDDDYYGIM-- 250

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----MEVVHHGIGYHMA 293
            S  L  + I    K + ADF     KQ  E    + Q    S     E   + IG  M 
Sbjct: 251 -SKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPEGTFECTTNYIGDFMV 309

Query: 294 QNMLMTL 300
            N+L  +
Sbjct: 310 SNVLAAM 316


>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
 gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
          Length = 484

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 145/367 (39%), Gaps = 32/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           + G++IDSR I     F A+KG   DGH FI  AV++GA  V++ N           I V
Sbjct: 23  IKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVLLENLPDTLDENVTYIQV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              ++  G +  +      R K  ++ +TG+ GKTT   +L             + +  N
Sbjct: 83  TSTEEDAGKVATMFYGNPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCN 141

Query: 146 HIG---VPLT------------LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +I    VP              LARM     ++   E   SH    R ++ L      + 
Sbjct: 142 YINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECS-SHAIHQRRISGLTFVG-GIF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      E   +AK   F+GL K      N DD     +   + A    ++ +
Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNADDKNGMFMVQNTKA----SVKT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +   + ADF+ +  +   E  ++E+   GK  EV    IG     N+L   G   +L   
Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEI--DGK--EVGVQFIGKFNVSNLLAVYGTAVLLGRQ 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  + A+S      GR +  +    +GF  ++D  Y   P ++   ++ +  +     G
Sbjct: 312 PEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YAHTPDALANVLAAIHDVLDSKGG 367

Query: 370 RRIAVLG 376
             I V G
Sbjct: 368 HVITVCG 374


>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 500

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 153/380 (40%), Gaps = 47/380 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           ++ IS DSR I     F AI G   DGH FI  AV +GAG++VV+    +   + +    
Sbjct: 30  IHDISSDSRHIQVGWMFVAIVGNQEDGHFFIPQAVAQGAGVIVVSSMHQSQDFSHVVKAD 89

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLT-----IALSSIK- 134
           IP+  VD+    L+   VAARL  K    I A+TG+ GKT+    +        LSS + 
Sbjct: 90  IPILVVDNTRRFLS--LVAARLYGKHPEKIFAVTGTSGKTSVASFVQQISQHAGLSSFQI 147

Query: 135 ---KTYACIGSYNNHIGVP------LTLARMP------VDVDFGIFELGMSHLGEIRFLT 179
                   +   +N +  P        LA +       V ++     L    L  I+F+ 
Sbjct: 148 GPISLMPSLQREDNRLTTPSPVYIAQALAYLASQGTTHVSIEASSHGLDQHRLDGIKFIA 207

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLK 236
                     T     H+      +   +AK  +FE L   G+   I  N DDS+   + 
Sbjct: 208 -------GSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLPKGSPAVICNNDDDSWSNKVM 260

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++H  G + + S G  K    +L+   Q +++  + + ++GK  + +    G     N 
Sbjct: 261 ERAHNAGCR-VLSVG-YKGTFIRLKNLTQINDKQQVSISVEGKDFDFLFPLQGAFQVSNA 318

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L++ G+      DV   I+ L   +   G   R+    N      I   Y   P S++  
Sbjct: 319 LVSAGLCIATGIDVPVVIEYLEKVNVIPG---RFEFIGNNSKGGRIYVDYAHTPNSLEMV 375

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L  I+    GR I V G
Sbjct: 376 LRNLRNIT---SGRIIVVFG 392


>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
 gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
          Length = 483

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 145/373 (38%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIP 84
           + G++IDSR I     F A+KG   DGH FI  A++ GA + V+  D+  V   G   + 
Sbjct: 23  ITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIELGA-ISVLCEDLPKVLQEGITYVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  L        K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VESTEDAVGKVATL-FYGDPSHKLKLVGVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVC 140

Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELG-----MSHLGEIRFLTHLVR 183
           N+I    VP              LA+M     ++   E          +G ++F   L  
Sbjct: 141 NYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGGL-- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   HL      E   +AK   F+ L K      N DD    ++   + A  
Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDSLPKDAFAITNADDKNGMIMVQNTKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T+ ++     ADF+ R  +   E  ++E+       EV    IG     N+L   G  
Sbjct: 252 --TVKTYSIRTLADFRARILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGAA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  LS  H   GR +       +GF  ++D  Y   P ++   ++ + ++
Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHSP--EGFTAIVD--YAHTPDALANVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
              G+G  I V G
Sbjct: 362 LD-GKGHVITVCG 373


>gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 508

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 166/397 (41%), Gaps = 50/397 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83
           ++GI+  S+ + P   FFA+ G H+DGHDFI  A+Q G+ ++V + D+     ++  + I
Sbjct: 28  ISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNVIVCSRDLDFYNPNVTYIKI 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG 141
             F +   +   + +      + K  +I +TG+ GK++    + + L    +K  +    
Sbjct: 88  DDFNIKKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLRKKGVKVGFISTV 146

Query: 142 SYNNHIG----------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHL 181
            +++  G                + L L+ M  + V + I E   SH   L   R +   
Sbjct: 147 FFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILE-STSHGLDLETARLID-- 203

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSH 240
           V    AV T I   HL     I+   + K  +F  + +  G   +N DD +    K   +
Sbjct: 204 VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDFYSYDFK---N 260

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+     YS  K+  ADF +    + ++ +  E   +G       + +G    +N++  L
Sbjct: 261 AIKKSFTYSL-KNSQADFFVSFINEKTDSTEFEFYHKGVKYFANVNLLGSFNVENVMAAL 319

Query: 301 GIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            +VS IL +D+   +  LS     +GR       L Q F  +ID  Y   P +      +
Sbjct: 320 ILVSKILNSDIQDIVDNLSCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAFSKLFPI 375

Query: 360 LSQISPHGEGRRIAVLGDMCE--------MGELSQSF 388
             + + +   R I+V G   E         G++S S+
Sbjct: 376 FKKFTTN---RLISVFGSAGERDFAKRFLQGQISDSY 409


>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
 gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
          Length = 484

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 145/367 (39%), Gaps = 32/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           + G++IDSR I     F A+KG   DGH FI  AV++GA  V++ N           I V
Sbjct: 23  IKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVLLENLPDTLDENVTYIQV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              ++  G +  +      R K  ++ +TG+ GKTT   +L             + +  N
Sbjct: 83  TSTEEDAGKVATMFYGNPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCN 141

Query: 146 HIG---VPLT------------LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +I    VP              LARM     ++   E   SH    R ++ L      + 
Sbjct: 142 YINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECS-SHAIHQRRISGLTFVG-GIF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      E   +AK   F+GL K      N DD     +   + A    ++ +
Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNADDKNGMFMVQNTKA----SVKT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +   + ADF+ +  +   E  ++E+   GK  EV    IG     N+L   G   +L   
Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEI--DGK--EVGVQFIGKFNVSNLLAVYGTAVLLGRQ 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  + A+S      GR +  +    +GF  ++D  Y   P ++   ++ +  +     G
Sbjct: 312 PEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YAHTPDALANVLAAIHDVLDSKGG 367

Query: 370 RRIAVLG 376
             I V G
Sbjct: 368 HVITVCG 374


>gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 492

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 137/355 (38%), Gaps = 27/355 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D          +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFEWNPEWEVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +    IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L         PVDV   ++           + +S  G  +   + V     + T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSTIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
           HL     +E   + K+ +F   GL+      +N DD +  EL            +YS+G 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S++AD ++  +   S+      Q            +G   AQN+   + ++      +D 
Sbjct: 266 SEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDK 325

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +  L+   P  G   R  C +N G   L+   Y   P +++ A++ L +I P G
Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376


>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 485

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 40/253 (15%)

Query: 22  VPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            PQG     V G+++DSR + P + F A+ G   DG  FI  A++KGA  ++    + A 
Sbjct: 15  APQGADGVEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGAVCILAPKGVTA- 73

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV   +D   AL+ +A     R  ATI AITG+ GK++T E L       ++ +
Sbjct: 74  ----PVPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEFL-------RQIW 122

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGMSHL-------GEI 175
           A  G     +G  L + R     D G               + E G++HL       G  
Sbjct: 123 AKAGIEAAALGT-LGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASSHGLK 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFEL 234
           +     VR  +   T +   HL      E+  S+K  +F  L   G    +N D  + + 
Sbjct: 182 QRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMDSDWSQR 241

Query: 235 LKAKSHALGIKTI 247
           +   + + G+  +
Sbjct: 242 VAQAAQSAGLSPV 254


>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 1; AltName:
           Full=Meso-A2pm-adding enzyme 1; AltName:
           Full=Meso-diaminopimelate-adding enzyme 1; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
           acetobutylicum ATCC 824]
 gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum EA 2018]
          Length = 482

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 157/377 (41%), Gaps = 53/377 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR +  +  FF I+G   DGHDFI  AV+KGA  V+V T +   + + +  V 
Sbjct: 23  IDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKGAD-VIVCTKVPKKLPNCT--VV 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D   A+  +          K  +I ITG+ GKTT+  M+   L S       IG+  
Sbjct: 80  KVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTSTYMMKSMLESSGYKVGLIGTIA 139

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P  L L ++  D     +D+ + E+    L   R    +      +
Sbjct: 140 NYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVMEVSSHSLYLDRVYGIVFEE--GI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E    AK  +F+  +++    +N DD + E +   +    I    
Sbjct: 198 FTNLTQDHLDFHKTFENYYKAKMILFKNSKRS---IINIDDKYGERVFKDAGNDKI---- 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G ++ AD +    K  S         +G   ++ + G+  H+  N+     + + L +
Sbjct: 251 TYGLTEKADLKAENLKMTS---------RGTEFDLCYRGLREHVKINIPGKYNVYNALGS 301

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCAL-----NQGFFTLIDESYNANPASMKAAISV 359
                 + +S+   K+G  K      RC +     N  F  ++D  Y   P  ++  +  
Sbjct: 302 VAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLD--YAHTPDGLEKVLKA 359

Query: 360 LSQISPHGEGRRIAVLG 376
             + +   +GR I+V G
Sbjct: 360 SREFT---KGRLISVFG 373


>gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
 gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
          Length = 514

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 23/312 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R     +A+TGS GKT+TK  L   ++   K+     SYN  +G+  T+ R  +D    +
Sbjct: 164 RLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTI-REKLDKSHEV 222

Query: 165 FELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEE-IASAKAEIFEGLEKTG 221
           F + ++      +  L  L++P I+++T+I   H   F  ++  I + K  I +  E++G
Sbjct: 223 FIVELAENDNYGYSKLLELIKPQISILTSIGIQHFEEFESLDNIIQNFKNFILD--ERSG 280

Query: 222 -TIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQ 277
             I  N DD   E +K     +  K   I      KNA +++ + K   +  ++  +   
Sbjct: 281 KKIIANIDD---ENIKNVLENIDTKKEIITCAINEKNAQYKVEELKISKDGANFAIITPN 337

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQ 336
            +      +  GY   +N+L+ +     L   V+  I +A ++  PK     R     N 
Sbjct: 338 NQKFYFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKPKH----RLEIVRND 393

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ID+++N+NP   K A+  L+        R+I V     E+GE     H  + + +
Sbjct: 394 T-ITVIDDTFNSNPKGFKMALEYLALFE---NKRKILVTPGFVELGEKEDEEHYKIGKEI 449

Query: 397 SLYNISHVWLSG 408
           + Y +  V+L G
Sbjct: 450 AKY-VDVVFLIG 460


>gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK353]
          Length = 459

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEAF----YPQIAVITNLMPTHLDYHGSVEEYAVAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
 gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
          Length = 487

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 157/397 (39%), Gaps = 60/397 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           HDLLQ              V GI+ DSR +     F A+ G   DGH  +  AV++GA  
Sbjct: 12  HDLLQGDADTD--------VTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAVA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +V+T       +L+I       V  +L    +      +  +++ITG+ GKT+T  ML 
Sbjct: 64  ALVSTTAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAAMLE 123

Query: 128 IALSSIKKT-YACIGSYNNHI-GVPLTLA----------------RMPVDVDFGIFELGM 169
             ++++       IG+    + G+P+ L                 R   D   G   +  
Sbjct: 124 SVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVVMEA 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S L   +         I V T ++P HL +   ++   +AK  +F G+     +  N DD
Sbjct: 184 SSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGMSSDAVV--NTDD 241

Query: 230 SFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               E+L+    A       +FG  K ADF  R +         EV   G    +VH G 
Sbjct: 242 PVSQEILERMPRA------TTFGMDKTADFTARAF---------EVSATGTRFLLVHDGQ 286

Query: 289 GY--HMA-------QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            Y  H+         N L  + +   L  +   A+ AL       GR +  R A   G  
Sbjct: 287 EYPAHLPIPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLRRA--DGTS 344

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++D +++A+  S++  +  L ++S    GR + V G
Sbjct: 345 IVVDYAHSAD--SLEKTLRTLREVS---SGRLLTVFG 376


>gi|327458768|gb|EGF05116.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1057]
          Length = 459

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYIEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLHGIDNQTIKEVLSAF 316


>gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 494

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 145/371 (39%), Gaps = 39/371 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I +DSR + P   F AI+G   DG  FI  AV +GA  V+   D      +L +P  G+ 
Sbjct: 25  IQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEEDGEFVAPALGVPCLGIP 84

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+   L++LA     +  SK  ++ ITG+ GK+TT  ++    + +      +G+  N +
Sbjct: 85  DLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCTLLGGKAGVMGTIGNGL 144

Query: 148 GVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIA 193
              L  A       + V  +    +   + L  +   +H +  H         AV T ++
Sbjct: 145 FGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALPFAAAVFTNLS 204

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFG- 251
             HL     +E   +AK E+ + + +   + LN DD    + L A   A+          
Sbjct: 205 RDHLDYHGTMEAYGAAKEELLKLVAEPCAV-LNADDRLGRQWLAAYPAAVAFSVHGPVAG 263

Query: 252 ------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  +++  F  + ++     SW    L    +       G     N+L  +G + +
Sbjct: 264 HPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLL-------GRFNVSNVLAAMGAMLV 316

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D D  + +     P  G   R  C    G   L    Y   P +++ A+  L     
Sbjct: 317 LGYDFDELLASAPQLQPVTG---RMEC-FGGGKAPLAVVDYAHTPDALEKALQALRV--- 369

Query: 366 HGEGRRIAVLG 376
           H EGR   ++G
Sbjct: 370 HCEGRLWCLVG 380


>gi|317180502|dbj|BAJ58288.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F32]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    YA   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas sp. SN2]
          Length = 530

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 37/239 (15%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G+++DSR +  + AF A+KG   DG DFI  A+  GA +++  TD   + G + 
Sbjct: 22  PDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDDSQAHGQME 81

Query: 83  -------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  I ++ +  +L AL   A       K   +A+TG+ GKT+T ++LT    ++  
Sbjct: 82  MRDHSVIISLYQLPSMLSAL-AAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQLKDALGT 140

Query: 136 TYACIGSYN---------------------NHIGVPLTLAR-MPVDVDFGIFELGMSHLG 173
             A +G+                       N I +   LA  +  +V    FE     L 
Sbjct: 141 RSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHTAFEASSHALV 200

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS 230
           + R     V+  IAV T +   HL     +EE A AK  + +  GLE    + LN +DS
Sbjct: 201 QGRL--SQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLE---AVVLNVNDS 254


>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
 gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
          Length = 494

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 146/391 (37%), Gaps = 42/391 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL +I  +       G +  I  DSR +     F  I G   DGH F   A   GA  ++
Sbjct: 9   LLTSIPAYRTSQDLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAIL 68

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLT 127
              ++      +SIPV  V D   A+  LA         K  +I +TG+ GKTT   ++ 
Sbjct: 69  AEKEI-----DVSIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTHLVE 123

Query: 128 IALSSIKKTYACIGSYNNHIG---------VP--LTLAR-----MPVDVDFGIFELGMSH 171
             +         IG+    IG          P  LTL R     +  DV     E+    
Sbjct: 124 QIVRDAGSETGLIGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHA 183

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFL 225
           L + R  T+     IAV T ++  HL     +EE A AK+ +F  L      EK     +
Sbjct: 184 LVQGR--TYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + +K  + A     + ++G  K ADF        S  +  ++       +V  
Sbjct: 242 NQDDPVSQRMKTATAA----PVITYGIDKAADFGATDVMVTSSGTTFKLHTPDGDFDVRI 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG     N L  L     L   +  AI +L       GR +       Q F  ++D  
Sbjct: 298 KMIGKFSIYNCLAALATSYALEIPIHQAITSLEKVQGVAGRFEIVDAG--QDFTVIVD-- 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P  +   ++VL  I      R  A++G
Sbjct: 354 YAHTPDGL---LNVLETIEEFKRSRVFAIVG 381


>gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 492

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 156/396 (39%), Gaps = 48/396 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDM---VASIGSLS 82
           G + D   + P   F A+ G    G   +  A+ +GA  V+V+    D+    A + ++S
Sbjct: 27  GTTFDVGRVTPGSLFIAVPGHGEGGPGSVGPALARGAAAVLVDGGAPDLPMSAAGVCAVS 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIG 141
           +P       + A        R   +  ++AITG+ GKT+   M+   L  S   T   IG
Sbjct: 87  VPDTRTAAAVVASRYFGAPGR---QMDMVAITGTNGKTSVSYMVESVLRLSEGATVGVIG 143

Query: 142 SYNNHIG-----VPLTLARMPVDVDFGIFELGMSHLG---------EIRFLTHLVRP--- 184
           +  + IG     +P ++   P   D       M   G          +  LTH V     
Sbjct: 144 TAGSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRGAGSVVLEATSMALLTHRVDCAFI 203

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V T +   HL +   +E    AK  +F+GL +   +  N DD     ++A     G 
Sbjct: 204 DVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRRAVV--NADDPVGAGIQAMMP--GA 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T Y    ++ AD++  +    +  +   +   G+         G +   N L T+    
Sbjct: 260 VTTYGL-DTEAADYRATELTVDASGTRFVLHHDGRKYPAAIPVPGRYSVANALATVAACH 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D+   + AL    P  GR +R+R    +G   ++D  Y  +P S+   ++ +   +
Sbjct: 319 ALGHDLGGLVAALDRMPPVPGRFERFRTP--RGTSVIVD--YAHSPDSLDKVLTTIRGFA 374

Query: 365 PHGEGRRIAVLG--------DMCEMGELSQSFHIDL 392
           P   GR I V G           EMGE++ + H DL
Sbjct: 375 P---GRVITVFGCGGDRDTTKRAEMGEIAGT-HSDL 406


>gi|261839440|gb|ACX99205.1| UDP-MurNAc-pentapeptide sythetase [Helicobacter pylori 52]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|145223576|ref|YP_001134254.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
 gi|189029001|sp|A4TBE7|MURC_MYCGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145216062|gb|ABP45466.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
          Length = 475

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 32/314 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV ARL    T + +TG+ GKT+T  M+ +AL       ++A  G       N H G 
Sbjct: 107 RPAVLARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSFAVGGDLGQAGTNAHHGS 166

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             T      + D  + E                 P +AV+T I   HL  +  +E   + 
Sbjct: 167 GSTFVAEADESDGSLLEY---------------SPDVAVVTNIEADHLDFYGTVENYTAV 211

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             +  + ++  G + +  DD     L  ++ ALGI+ +  +G +   D  L  W Q    
Sbjct: 212 FDQFVDRIKPVGALVVCVDDPGAAALAERTAALGIR-VLRYGSAPGLDATLLDWSQLGTG 270

Query: 270 SWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  E+ ++ +           G HMA N L  L   +   AD+D  +  L+ F   +G  
Sbjct: 271 AVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAATQAGADIDAVLDGLAGF---DGVR 327

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQ 386
           +R+      G   + D+ Y  +P  ++AAI+ L  ++    G R +AV      +   ++
Sbjct: 328 RRFELVGTAGGVRVFDD-YAHHPTEVRAAITALRAVAEQTPGARTVAVF--QPHLYSRTE 384

Query: 387 SFHIDLAEVLSLYN 400
           +F  + A  LS  +
Sbjct: 385 TFATEFAASLSTAD 398


>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
 gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
          Length = 482

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 47/394 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164
           TT   +L             I +  N+I             P+T    L RM  +    +
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F    SH    + ++ L +    + T +   HL     +E    AK + F+ L K     
Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD    ++   + +     +Y++     +DF+ R      E  +  + L   + E+ 
Sbjct: 235 TNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D 
Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344

Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
           ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC
           35896]
          Length = 510

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 140/346 (40%), Gaps = 38/346 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--V 100
           F  IKG   DGH ++  AV+  A + VV T        + IP   V+D   AL  ++   
Sbjct: 40  FVCIKGYKADGHKYLASAVEHNAIVAVVET-----FQDIDIPQVKVEDSRIALATMSSNY 94

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-----SYNNHIGVPLTLAR 155
                 K T+I IT + GKTTT  M+   L   KK    IG     S N  I   LT   
Sbjct: 95  YDNPSKKMTVIGITATNGKTTTAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLT--- 151

Query: 156 MPVDVDFGIF-----ELGMSHLG-EIR------FLTHLVRPHIAVITTIAPAHLSNFSGI 203
            P  +D   +     E G++HL  E+          H V         I+  H+      
Sbjct: 152 TPESLDLQKYMAMMVEQGVTHLTMEVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSF 211

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYS-----FGKSKNAD 257
           E+    K+ +  G++ +    +N DDS   +L++ K + +   ++ S     +    +  
Sbjct: 212 EDYFQIKSTLIRGMKPSAKAVINADDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLS 271

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             +  WK     +   + L    +++     GYH   N +  + +  +   D+DT    L
Sbjct: 272 TGIANWKIVPNPTKSTLSLLNSEVKIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGL 331

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              H  +G  +R+    ++  F +ID+ + AN  +++  +  L ++
Sbjct: 332 ---HSFKGVERRFELIYDKE-FKIIDDHF-ANTGNIRVTLETLKKM 372


>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 489

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 35/224 (15%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVF 86
           G++ DSR +     F AIKG   DGHDFI  A++KGA  VV     D V ++  + +P  
Sbjct: 25  GLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKGAIAVVAEKGVDYVINVPQIVVP-- 82

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL+ L+        SK TI+ ITG+ GKTTT       + S       IG+  
Sbjct: 83  ---NARRALSLLSEYFYGYPSSKMTIVGITGTNGKTTTSFFTKSIIESSGNKAGLIGTIY 139

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGE-----IRFL-----THLVRPHI------ 186
             +G  +  A    P  VD        SHL +     IR+      +H +  H       
Sbjct: 140 YQLGSRIIPANETTPESVDI------QSHLSDMLNNNIRYAVIEASSHALSQHRLDGVHF 193

Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             AV T ++  HL     I+     K ++  GL++  +  LN D
Sbjct: 194 RSAVFTNLSAEHLDYHENIKNYREEKIKLMRGLDENASAVLNAD 237


>gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 467

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 182/429 (42%), Gaps = 59/429 (13%)

Query: 61  VQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           ++KG  LVV        N ++VA+  +  +P+     +LG +        +R+    I I
Sbjct: 66  IEKGIELVVYTAAIHPDNPELVAAKKA-GLPIISRAGLLGEI--------MRNYRNAINI 116

Query: 114 TGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +G+ GKTTT  M+  I L +       +G     IG          ++  G  E  ++  
Sbjct: 117 SGTHGKTTTTSMIAEILLEADWDPTVTVGGMMRDIGG---------NIRVGQSENFIAEA 167

Query: 173 GEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            E    FL+    P I V+  +   HL  F  +E+I  +     E L + G + +N D  
Sbjct: 168 CEYTNSFLSFY--PTIEVVLNVEADHLDFFKDLEDIRHSFRRFTEKLPENGLLVINRDIP 225

Query: 231 FFELLKAKSHALGIKT-IYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +E         G++  + ++G  ++AD+      +   +  S+   + +GK +  +  G
Sbjct: 226 HYEYFTE-----GLRCRVLTYGHDRDADYTANFISYDHYAHPSYTLFE-RGKELGPISLG 279

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           + G H   N L  + +   L  +++T  +AL  F   +G  +R++       FT+ID+ Y
Sbjct: 280 VTGEHNIYNSLSAIAVGRALGIELETIRRALHRF---QGTDRRFQKKGEVCGFTIIDD-Y 335

Query: 347 NANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             +P  + A I    +           PH   R  A++ D    G LSQ+  I LA++ +
Sbjct: 336 AHHPQEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFA--GALSQADEIVLADIYA 393

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               + V +S   +   +  L ++ +V+Y      +  F+   L  GD+++   +     
Sbjct: 394 AREKNTVGVSSEDL--RRHMLEQNTNVYYIPDFQRIEDFLMERLQPGDLLITMGAGD--I 449

Query: 458 YRLINLLLE 466
           YR+ + LL+
Sbjct: 450 YRVGDALLK 458


>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
 gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
          Length = 482

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 47/394 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164
           TT   +L             I +  N+I             P+T    L RM  +    +
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F    SH    + ++ L +    + T +   HL     +E    AK + F+ L K     
Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD    ++   + +     +Y++     +DF+ R      E  +  + L   + E+ 
Sbjct: 235 TNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D 
Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344

Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
           ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|317177431|dbj|BAJ55220.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F16]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|308063475|gb|ADO05362.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Sat464]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  D  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSDIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
 gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 47/394 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164
           TT   +L             I +  N+I             P+T    L RM  +    +
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F    SH    + ++ L +    + T +   HL     +E    AK + F+ L K     
Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD    ++   + +     +Y++     +DF+ R      E  +  + L   + E+ 
Sbjct: 235 TNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D 
Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344

Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
           ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
 gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
          Length = 486

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 35/388 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++ I+   I    Q  +  I IDSR +  Q  F A++G   DGH +I  A+++GA 
Sbjct: 3   IENLIKGIETKKIIGPVQNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGA- 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            V +  + +    +  I    V     AL  LA        SK  ++ +TG+ GKTT   
Sbjct: 62  -VAILCEDLPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVDV-----DFGIFELG 168
           +L      +      + +  N+I           P  +T+ ++  D+     D+   E+ 
Sbjct: 121 ILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + + ++ L +    + T +   HL     I     AK E F+ L K     +N D
Sbjct: 181 -SHAIDQKRISGL-KFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNLPKNAFSLVNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     I+++      DF+ R      E  +  + L+  + +VV    
Sbjct: 239 DKNGMVMVQNTKS----AIHTYSLRSLCDFKAR----VIESHFNGMILEINNTDVVVQFT 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    D  + A+S      GR +  +    +G+  ++D  Y  
Sbjct: 291 GKFNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETLQAP--KGYTVIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P ++   ++ +  I   G+G+ I V+G
Sbjct: 347 TPDALTNVLTTIHDILD-GKGKVITVVG 373


>gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
 gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
          Length = 488

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 27/256 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ IS DSR++ P   F A  G  + G DFI  AV  GA  V++++  ++   ++ +PV 
Sbjct: 25  VSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADGAVAVLIDSSELSDCPNVDVPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           G+ D++  +    VAAR   +     T++ ITG+ GKT+    +  A+++I    A +G+
Sbjct: 85  GISDLVSEIGP--VAARFYEQPSRAMTVVGITGTNGKTSCAHFVAQAMNNIGVKTAIVGT 142

Query: 143 YNN---------------HIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             N                IG+    A +     +  + E+    L + R     V    
Sbjct: 143 VGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVVMEVSSHALEQGRVAA--VDFDY 200

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKS-HALGI 244
            + T ++  HL     +E    AKA +F+       + +N DDSF  +LL+ +S  A  +
Sbjct: 201 GLFTNLSRDHLDYHGSMEAYGEAKARLFKEFNLKAAL-INGDDSFGRKLLRDESIEARKV 259

Query: 245 KTIYSFGKSKNADFQL 260
                FG+   A ++L
Sbjct: 260 SVGRLFGQYHFAAYRL 275


>gi|331701578|ref|YP_004398537.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128921|gb|AEB73474.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 443

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 115/283 (40%), Gaps = 38/283 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   LS I  T   IG  +   GVP        +  F ++E  
Sbjct: 105 TSIGVSGAHGKTSTTGLLAHVLSGIAPTDYLIGDGSGK-GVP--------NARFFVYEAD 155

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P  A++T I   H   +  I+++A A  + F    K G IF   D
Sbjct: 156 -----EYRRHFLATEPDYAIMTNIDFDHPDYYKSIDDVADA-FQTFANQTKKG-IFAWGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     LKAK        IY +G     DFQ    K+ +  S  +V  +GK++      +
Sbjct: 209 DKRLRQLKAKV------PIYYYGLKDTDDFQAVDVKRTTSGSSFDVTYKGKNLGNFSVPL 262

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +      D+D   K L  F   +G  +R+      G  T+ID+ Y 
Sbjct: 263 FGEHNIFNSLAVIAVAYFEDVDLDEIRKELKTF---QGVKRRFAERKIAG-MTIIDD-YA 317

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
            +P  +KA I    Q            PH   R IA++ D  +
Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360


>gi|325570066|ref|ZP_08145991.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156894|gb|EGC69065.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 444

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 44/301 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS I+ T   IG    H G P        D +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIGDGTGH-GEP--------DAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   F  I+++ SA   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYFHSIDDVFSAFQSMASQVKK--GIFAF 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD +   L+A         IY +G + N D Q +  ++ ++ S  +V + G+++   V 
Sbjct: 208 GDDEYLRKLEADV------PIYYYGVNDNDDVQAKNIERTTQGSEFDVFIHGENIGHFVL 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D+      +  F    G  +R+   +     T++D+ 
Sbjct: 262 PAFGQHNINNALSVIAVAYKEGLDMKEVAAEMLSF---PGVKRRFSEKIVAD-MTIVDD- 316

Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   H+ L ++
Sbjct: 317 YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLAD--HVYLCDI 374

Query: 396 L 396
            
Sbjct: 375 F 375


>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
 gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
          Length = 499

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 150/375 (40%), Gaps = 41/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+ +DSR + P   FFA+ G   DG  FI  AV +GA  V + T  + +     + V 
Sbjct: 25  ISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGA--VAIVTQKMPAHPPGKVTVI 82

Query: 87  GVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D    L +  VA R         T+I +TG+ GKTT   +L   L+  ++    +G+
Sbjct: 83  QVADARATLAR--VAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGDQRV-GLLGT 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IA 187
            N  +G     A         I+ + M+ + +   R     V  H              A
Sbjct: 140 INYDLGARTVPAYRTTPESLDIYGM-MAQMRDAGCRQAVMEVSSHGIDQQRVAGLQFGAA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFELLKA--KSHA 241
           V T +   HL     ++     K  +F G   TG       +N+DD +   L A  K   
Sbjct: 199 VFTNLTRDHLDYHKTLDAYFEVKKRLFTG--GTGAAPKVAVVNFDDPYGVTLAASLKREH 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              K + +FG++  AD +          S   +   G +ME+    IG +   N+L  + 
Sbjct: 257 QSAKLV-TFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLLAAIA 315

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L  D    +  L  F    GR +  R    Q +  L+D ++  +  +++ A+ +L 
Sbjct: 316 AAWGLGRDPFVFLARLRAFKGVPGRME--RIDEGQPYNVLVDYAHTDD--ALRNALGMLR 371

Query: 362 QISPHGEGRRIAVLG 376
            I+P   GR   V G
Sbjct: 372 AITP---GRLFVVFG 383


>gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
 gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
          Length = 480

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 160/369 (43%), Gaps = 37/369 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR++ P + FFA+ G   DG  FI  A++ GA  VV +        S+S+PV 
Sbjct: 22  VAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAGAVAVVAD-----HAHSVSVPVI 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT---KEMLTIALSSIKKTYACIGSY 143
              +   AL   A A   R   TI A+TG+ GKT+       L  +L     +   IG  
Sbjct: 77  VTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAAFTRQLWDSLGYDAASLGTIGIV 136

Query: 144 NNHIGVPLTLARM-PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIAVITTI 192
           + H  V  +L    PV +   + EL   G++HL       G  +     VR   A  T +
Sbjct: 137 SRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEASSHGLDQHRLDGVRIAAAAFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIYS 249
           +  H+     +E   +AK  +F  L   G    I  +++ S   +  A++  L + TI  
Sbjct: 197 SRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADHEHSAAVIAAARARKLDVITIGR 256

Query: 250 FGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            G+  +  D  +  + Q      M +Q +G++  +    +G    +N L+  G+V     
Sbjct: 257 KGEGIRLVDATIDGFGQ-----KMTIQHRGQTHRLRLPLVGEFQIENALVAAGLVIATGG 311

Query: 309 DVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           D   A K  S     EG +G+       +G    +D ++  + A MKA    L  + P+ 
Sbjct: 312 D---ATKTFSALEQLEGAKGRLELIGDCRGAPVFVDYAHKPD-ALMKA----LEALRPYA 363

Query: 368 EGRRIAVLG 376
           +GR + V G
Sbjct: 364 KGRLVVVFG 372


>gi|317129301|ref|YP_004095583.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM
           2522]
 gi|315474249|gb|ADU30852.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM
           2522]
          Length = 316

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 30/286 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAF----FAIKGPHYDGHDFILHAV 61
           FH LL+ I  H  G +P  FV  GI+ +   +  +E F      ++  +    D ++ A 
Sbjct: 8   FH-LLKTISSHIHGEIPLSFVAKGIATNINDV--KEGFIYLPLDLENENNGITDHLMKAK 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA    +  D++ S  S ++P+F V+D    + +LA         T++AI G    + 
Sbjct: 65  EHGAVASFIKKDLITSSLSHNLPLFEVEDYTSTIEQLAKEYVDEIDPTVVAIVGK-NSSF 123

Query: 122 TKEMLTIALSSIKKTYAC-----IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           TK++L   L   K  YA      +  Y + + V L+  +M    +  I E  ++ +  I 
Sbjct: 124 TKDLLAHIL---KTNYAVHKSDHLSKYED-LHVCLSALKMERHANVFISEYDLNSIHHIT 179

Query: 177 FLTHLVRPHIAVITTIAPAH-LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            L+HL  P+  +IT I     LS     EE+ +A   +  G+  T ++ L+ DD F    
Sbjct: 180 KLSHLFPPNYGIITEIGKREKLSE----EEVRAAYISLESGMRATASLVLDADDEFL--- 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               H   +  + S G +K+  FQ+   K+  E+  +   L+G  M
Sbjct: 233 -VHHHEWKVDVVTS-GSTKHCLFQIDTLKENGEE--LHFSLKGVYM 274


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 180/437 (41%), Gaps = 56/437 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ--KGAGLVVVNTDM------VASIGSLSIP 84
           D +S A  E   ++    Y GH     A +  K   ++VV+T +      V +   + IP
Sbjct: 37  DLKSTATTERLASLGATCYTGH-----AAENLKDVDMLVVSTAIADDNPEVVAAKRMGIP 91

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM--LTIALSSIKKTYACIGS 142
           +    ++L         ARL  +   IA+ G+ GKTTT  M  L + ++ +  T   IG 
Sbjct: 92  IVRRGEML---------ARLMKEKQGIAVAGAHGKTTTTSMTALVLEMNGLDPTI-LIGG 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             ++IG    L R       G + +  +   +  FL  L+ P +AV+T I   HL  +  
Sbjct: 142 DLSYIGGNAKLGR-------GDYLVAEADESDGSFL--LLDPVVAVVTNIEDDHLDYYGS 192

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLR 261
            E I  A  E    + ++G   +  DD     L A         + ++G  +  AD+ + 
Sbjct: 193 RENIVKAFREFLNKVPESGLAVVCGDDPTVRQLIADLTC----PLVTYGSYNSGADYTID 248

Query: 262 KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +    E +  +V  +G+ + ++V +  GYH   N L  + +   +         AL  F
Sbjct: 249 SFALQGETTLGQVSFRGEKLGQLVLNVPGYHNLLNALAVVAVGRYVGLSFSQIAAALREF 308

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG---- 376
              +G  +RY+         ++D+ Y  +P  +KA +    Q  P   GR IAV      
Sbjct: 309 ---KGAKRRYQLIGEVKGAKIVDD-YAHHPTEIKATLQAARQAHP---GRIIAVFQPHRF 361

Query: 377 --DMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMD 431
                   E  +SF H D+  +  +Y      + G H   + DA+ +  +  V Y  T++
Sbjct: 362 TRTRQLFREFGESFAHADILILTDIYPAGEKPIEGVHTKLIVDAIAKRPNQQVIYLPTLE 421

Query: 432 GLFLFIQSSLVDGDVVV 448
               F+   + +GD+V+
Sbjct: 422 EATNFLTQQVTEGDLVL 438


>gi|332673458|gb|AEE70275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 83]
          Length = 493

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDKSEIYIAEAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus
           flavithermus WK1]
 gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus
           flavithermus WK1]
          Length = 447

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A II ITGS GKTTT  ++   L   K+     G+      V   +A+     D  + 
Sbjct: 107 SEAPIIGITGSNGKTTTTTLIYHMLQEAKRRPLIAGNIGT---VACEVAKHATKDDIIVM 163

Query: 166 ELG-MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           EL     LG IRF     RPHIAV+  I  AHL      E  A AK  IF+   +T    
Sbjct: 164 ELSSFQLLGTIRF-----RPHIAVLLNIFDAHLDYHGTKEAYAEAKGNIFKNQTETDYAV 218

Query: 225 LNYDDSFFELLKAKSHA----LGIKTIYSFGKS 253
           +N DD     L  KS A      +KT  S+G +
Sbjct: 219 VNADDPIVMQLAKKSRARHVPFSVKTPLSYGAT 251


>gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
 gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
          Length = 477

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 41/256 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F AI G  +DGH FI  A++ GA  +V+  D+    G   I   
Sbjct: 23  ITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDG---INYI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   AL +++  V      K  +I +TG+ GKTTT  M++  L  +      IG+  
Sbjct: 80  KVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLNSPCTNIGTNG 139

Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183
             I       P T         + ++ VD  +D  + E     L +  L  I F      
Sbjct: 140 TFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLDGIDF------ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV   ++  H+     +E    AK  +FE  +K      N DD +    KA+     
Sbjct: 194 -DVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244

Query: 244 IKTIYSFGKSKNADFQ 259
            +  Y+F     +DF+
Sbjct: 245 FEDTYTFSLENESDFR 260


>gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 45/381 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++LG +        +R+    +A++G+ GKTTT  M+T  L +        G+
Sbjct: 114 IPMLSRAELLGEM--------MRNYKQAVAVSGTHGKTTTTSMITDILLA--------GN 157

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200
            +  I V   L  +  ++  G  EL ++   E    FL+    P + VI  I   HL  F
Sbjct: 158 LDPTISVGGILQDIGGNIRVGSPELFVTEACEYTNSFLS--FHPTMEVILNIEEDHLDFF 215

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             I++I  +     E L   G + +N   S  + ++  +  LG + + +FGK  ++ +  
Sbjct: 216 KDIQDIRHSFRLFAEKLPSRGLLVIN---SGIDAVEEITKGLGCRVV-TFGKDSSSTYTA 271

Query: 261 RK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +   +   +  S+ ++ +QG+ +  +  G+ G H   N L  + +   L A  D  +  L
Sbjct: 272 KDITYDGFARPSY-DLVIQGEVVNRITLGVTGEHNVYNSLAAIAVAMELGAGFDAVMAGL 330

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGE 368
             F    G  +R+      G  T+ID+ Y  +P  +KA +S               PH  
Sbjct: 331 RKF---TGTDRRFEKKGEIGGITIIDD-YAHHPQEIKATLSAAKNYPHRKLWCVFQPHTY 386

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            R  A L    E   LS +  + LA++ +      + +S   +    + L      HY  
Sbjct: 387 TRTKAFLDQFAET--LSAADEVILADIYAARETDTLGVSSRDIAQRIERL--GTKAHYIP 442

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           + D +  FI  + ++GDV++ 
Sbjct: 443 SFDDIETFILENCINGDVLIT 463


>gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 515

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 32/217 (14%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G+++DSR +  + AF AIKG   DG DFI  A+  GA +++  TD   + G + 
Sbjct: 22  PDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDDSEAHGQME 81

Query: 83  -------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  I ++ +  +L AL   A       K T +A+TG+ GKT+T ++LT    ++  
Sbjct: 82  MRDHSVIISLYELPQMLSAL-AAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQLKDALGT 140

Query: 136 TYACIGSYNNHI--GVPLTLARMPV--------------------DVDFGIFELGMSHLG 173
             A IG+  + +  G     +  P                     +V    FE     L 
Sbjct: 141 RSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAFEASSHALV 200

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + R  T  V+  IAV T +   HL     +EE   AK
Sbjct: 201 QGRLGT--VKTDIAVFTNLTRDHLDYHGTMEEYGKAK 235


>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 487

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 56/382 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAVAYEVEGATVLPLTDVPL 76

Query: 86  FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R       +  ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 N I V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHGLDQGRVAALAF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV+T ++  HL     +E   +AKA++F   +    + +N DD F   L A  H
Sbjct: 192 ----DVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCRV-INLDDDFGRQLAADKH 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHH----GIGYHMAQ 294
              + T YS   +         +  C E  + +  ++    + +  HH     +G     
Sbjct: 247 ESRLIT-YSLEDAA-------AYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLS 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  +G +  L   +D  +  L       GR +R    L  G   L+   Y   P +++
Sbjct: 299 NVLAAVGALLGLEYALDEILAVLPKLEGPAGRMQR----LGGGTQPLVVVDYAHTPDALE 354

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
               VL  + PH +GR + + G
Sbjct: 355 ---KVLLALRPHAKGRLLCLFG 373


>gi|332686694|ref|YP_004456468.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
 gi|332370703|dbj|BAK21659.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
          Length = 446

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 52/307 (16%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TG+ GKT T  +L   LS +K T   IG    H G P        D +F  FE  
Sbjct: 108 TSIAVTGAHGKTGTTGLLAHVLSGVKPTSYLIGDGTGH-GNP--------DAEFFAFEAC 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                +  FL++   P  A++T I   H   ++ IE++ SA   +   ++K   IF   D
Sbjct: 159 EY---QRHFLSY--SPDYAIMTNIDFDHPDYYTSIEDVYSAFQSLANQVKK--GIFAYGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +   L A         IY +G ++N D Q +  ++ ++ S  +V  +GK   + H  +
Sbjct: 212 DKYLRKLNADV------PIYYYGVNENDDIQAKNIQRTTKGSSFDVYYEGKF--IGHFDL 263

Query: 289 GYHMAQNMLMTLGIVS---ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDE 344
             +   N+L  LG+++       D+D     +  F     +G + R    Q G   +ID+
Sbjct: 264 PAYGQHNILNALGVIAAAYFEELDMDEVAIEMKTF-----KGVKRRFTEKQIGDMIIIDD 318

Query: 345 SYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Y  +P  + A I           +++   PH   R IA+L +  +         +DLA+
Sbjct: 319 -YAHHPTEISATIDGARQKYPNKEIVAVFQPHTFTRTIALLDEFGKA--------LDLAD 369

Query: 395 VLSLYNI 401
            + L +I
Sbjct: 370 YVYLCDI 376


>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 441

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 159/378 (42%), Gaps = 57/378 (15%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGH---DFILHA--VQKGAGLVVVNTDMVASIGSLSIPVF 86
           ID+R   P     +   P ++G    D++L+A  V    G+ +   ++   + S  IPV 
Sbjct: 40  IDTRENVPGRERLSSSVPLHNGSFNLDWLLNADLVVTNPGIALATPEIQQVLAS-GIPVV 98

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G  ++    N             +IAITGS GK+T  +    ALS+     A  G    +
Sbjct: 99  GDIELFAWDND----------KPVIAITGSNGKSTVTDWTGQALSAAGLDVAVGG----N 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP  L  +    D  + EL    L      T  ++  +AV   ++  H+  +  +++ 
Sbjct: 145 IGVP-ALDLLQHQADIYVLELSSFQLET----TSSLKSKVAVFLNLSEDHMDRYRSMDDY 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH---ALGIKTIYSFGKSKNADFQLRKW 263
            +AK  IF+  +      +N DD     LK  S+   +L  KT ++     + +F   + 
Sbjct: 200 RNAKLRIFDNAD---VRIVNADDIATYPLKDSSYLEFSLDKKTDFAVTTQDDVEFFTLQG 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K+    S  E+ L           +G H   N L+ L ++  +  D++   +AL V    
Sbjct: 257 KKVLSTS--EISL-----------VGRHNVSNCLVVLALLHSVGVDIE---RALPVIKSY 300

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R +  L+ G    +++S   N AS KAA++ L       EG+   ++G + +  +
Sbjct: 301 SGLTHRCQVVLDNGGIKWVNDSKATNLASTKAALTGLRM-----EGKLFLLVGGVSKGAD 355

Query: 384 LSQSFHIDLAEVLSLYNI 401
            S+     LA +L   N+
Sbjct: 356 FSE-----LAPILKNLNV 368


>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 486

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 64/388 (16%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIG 79
           P+  + G+ IDSR     + +F ++G  +DGH+FI   ++KG   +V +    DM   + 
Sbjct: 11  PEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVDDMKKGVA 70

Query: 80  SLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            +      V++V   LN++A         K  +  +TG+ GK+T    +T  +  +   +
Sbjct: 71  YIQ-----VENVNRTLNRVASMFYGHPSRKMKVFGVTGTNGKST----ITSIIRDVYSHF 121

Query: 138 ACIG-------SYNNHIGVPLTLAR---------MPVDVDFGIFELGM---SH---LGEI 175
           A  G       SY   + +P +L           M   V+ G+  + +   SH   LG +
Sbjct: 122 APCGYIGTISISYG-EVTLPPSLTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRV 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     V   +AV + +   HL     IE    AK ++F  L+K G   LN DD++ + L
Sbjct: 181 Q----SVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKEGVAVLNADDAYVDQL 236

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              + A    ++ ++G   +A +Q    +         ++  G    +VH    Y ++ N
Sbjct: 237 ADATEA----SVVTYGIDNHATYQAENIR---------IEKTGSRFTLVHGTERYEVSTN 283

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNA 348
           ++    I ++L A    A   + +          ++  G+  R    Q F  ++D  +  
Sbjct: 284 LVALYNIYNLLGAVAAMAESGIPIEQQLPYLHDIRQIEGRMERIDEGQLFNVIVD--FAH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P  M+        I+  G    IAV G
Sbjct: 342 TPDGMEKVFEYAKDITEDGHS-IIAVFG 368


>gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
 gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
          Length = 468

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 124/286 (43%), Gaps = 26/286 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           + + A  A + +  T +A+ G+ GKTTT  MLT+AL       + C+G           L
Sbjct: 102 IPRAAALASVMAGRTGVALAGTHGKTTTTSMLTVALQKCGADPSYCVGGQ---------L 152

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
               +  D G  E+ ++   E      ++ P IAV+T + P HL N+     +  + A  
Sbjct: 153 VTTGLGADEGAGEVFVAEADESDGSFLMLAPEIAVVTNVEPDHLDNYGDPRAVYDSFARF 212

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E + K  ++ +  DD     L   + A G+K + ++G+++ ADF++       +   + 
Sbjct: 213 VERVGK--SMVICADDPGSAALVPIARARGLKVV-TYGEAEGADFRVSGI--LPDGLGIS 267

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             ++G+  EV     G H A N    + +   L    D     L+ F    G  +R+   
Sbjct: 268 FAVEGRG-EVRLAVPGRHNALNATAVIAVAMELGVSFDEIRDGLAAF---TGAKRRFEAK 323

Query: 334 LNQGFFTLIDESYNANP----ASMKAAISVLSQISPHGEGRRIAVL 375
              G   + D SY  +P    A ++AA  V++  S  G GR IAV 
Sbjct: 324 GEAGGVAVFD-SYAHHPTELAADLRAARDVVASFS--GSGRVIAVF 366


>gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
 gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 27/225 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           V+ + +DSR + P   F A++G   DG  FI  A+ KGA  VV         GS+     
Sbjct: 27  VSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVAQESSEHPHGSIEVQAG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV  ++ +   L+ LA          +I +TG+ GKTT  +++   L  ++K  A +G+
Sbjct: 87  IPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTITQIIAQWLGLVEKRAAVLGT 146

Query: 143 YNN---------------HIGVPLTLARMPVD-VDFGIFELGMSHL--GEIRFLTHLVRP 184
             N                I +  TLA +     D+   E+    L  G ++ L   V  
Sbjct: 147 AGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSHGLVQGRVKTLPFAV-- 204

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             +V T ++  HL     +EE   AK  +F    KT    +N DD
Sbjct: 205 --SVFTNLSRDHLDYHGTMEEYEQAKLTLFTE-HKTAHAVINVDD 246


>gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelagibaca bermudensis HTCC2601]
 gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. HTCC2601]
          Length = 494

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 161/385 (41%), Gaps = 59/385 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS+DSR++ P   F A+ G    G  FI  A+ +GA  V V TD  A    L+    
Sbjct: 23  VTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGA--VAVLTD--AEGARLAEAAL 78

Query: 87  GVDDVLGALNKLAVAARLRS-------------KATIIAITGSVGKTTTKEMLTIALSSI 133
              DV      L +AA  R+              AT++A+TG+ GKT+         S +
Sbjct: 79  AESDV-----ALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVA-------SFV 126

Query: 134 KKTYACIGSYNNHIGV-----------------PLTLARMPVDV-DFGIFELGM---SHL 172
           ++ +  +G    ++G                  P+TL +   +    G+    M   SH 
Sbjct: 127 RRLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHG 186

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSF 231
            + R L   V+   A  T     HL   +  EE  +AKA +F   L + GT  +N DD+ 
Sbjct: 187 LDQRRLDG-VQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDAR 245

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              + A + A G + + + G+S+ AD +L   +  +    + +   G   ++  + IG  
Sbjct: 246 GIDMLAIARARG-QEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGF 304

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             QN L+  G+V    A+ +   +AL       GR  +     + G    +D  Y   P 
Sbjct: 305 QGQNALVAAGLVIACGAEAEDVFRALPRLETVHGR-MQLAATRDSGAAVYVD--YAHTPD 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           ++  AI  L    PH  GR IA++G
Sbjct: 362 AVATAIKAL---RPHVMGRLIAIVG 383


>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
 gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
          Length = 495

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 148/367 (40%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++     AF  IKG   DGH++I  A+Q GA L+VV+     S     I   
Sbjct: 33  ITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGARLIVVDEFFDTSKIKGKIDYI 92

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++    A       +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 93  KTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIK 152

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           N IG     A+   P   D           G+  + M   SH  E+ F  +     + V 
Sbjct: 153 NMIGSKEIEAQHTTPESYDLQKLFWQMRNEGVDSVVMEVSSHSLEL-FRVYASDFDVGVF 211

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   SAK ++F G+ K   I  N DDS+      K          +
Sbjct: 212 TNLTQDHLDFHGTMENYFSAKLKLF-GMSKKRVI--NADDSW-----GKRIIEMYPDCMT 263

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  NA    R  K    ++  ++    K  E++ +  G     N L       +L  +
Sbjct: 264 YAKDSNATVCARNIKLYVNKNQFDLWYNDKKEEILLNIPGLFSIYNSLAAAACCILLGIE 323

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +DT  K L       GR +      N+ F  +ID  Y   P  +   ++++  ++   +G
Sbjct: 324 LDTIKKGLEELKAVPGRFEIVES--NEKFTVVID--YAHTPDGL---LNLMRTVNEVADG 376

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 377 RKVLLFG 383


>gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15]
          Length = 485

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 157/377 (41%), Gaps = 46/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLS 82
           ++G+  DSR +A  +AF A+ G       ++  A+  GA ++++            G+L 
Sbjct: 15  IHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQQAGECTEHHGALI 74

Query: 83  IPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +PV G+  ++G +        + RLR    +I +TG+ GKT+  + +   L         
Sbjct: 75  VPVAGLRSLVGRIADRFFEHPSQRLR----LIGVTGTNGKTSVCQYVAQLLKETGTPCGI 130

Query: 140 IGSYN---------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+                 + + V   L+R+   +    + E+    L + R     + 
Sbjct: 131 LGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLSMT 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKS 239
              AV T +   HL     +E   +AKA++F+  E   ++ +N+DD F    FE L  K 
Sbjct: 191 G--AVFTNLTRDHLDYHGSMEAYGAAKAQLFQREELHFSV-INFDDPFGRQLFEQLDGKC 247

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +  YS  +++  +  LR+++   E    EV  +     V    +G   A N+L  
Sbjct: 248 D----RVRYSLHEAQT-ELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAA 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  V  L   ++   +A+    P  GR +R+  A   G   ++D  Y   P ++  A++ 
Sbjct: 303 MATVLTLGVPIERVQQAVGRLTPPPGRLERFVGA--NGVRVVVD--YAHTPDALANALTA 358

Query: 360 LSQISPHGEGRRIAVLG 376
           L    PH  G  + V G
Sbjct: 359 L---RPHVTGELVCVFG 372


>gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
 gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
          Length = 551

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 153/376 (40%), Gaps = 47/376 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           + N +++DSR   P+  F A  G +  G  F+  A+ +GA  V V T  V  + +  +P 
Sbjct: 29  YFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGA--VGVVTSQV--LPNCPLPQ 84

Query: 86  FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             V +   A   L+       A+RLR    ++ +TG+ GKTT   M    ++        
Sbjct: 85  CVVANPRAAYAYLSQSLYGHPASRLR----MMGVTGTNGKTTVSWMTRALMAKSGYRTGL 140

Query: 140 IGS---YNNHIGVPLTL----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRP-------- 184
           +G+   ++ +   P  L    A++       +   G +HL  +   +H +          
Sbjct: 141 LGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLA-MELSSHSLDQSRAAALPL 199

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSH 240
             A++T I   HL           AKA I + ++  GTI L+ +D    S   L+ A+  
Sbjct: 200 DCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAASLASLVPAECR 259

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +  +G + +A+   +   +    +   VQ QG+ M++    +G H  +N L  L
Sbjct: 260 ------LIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAAL 313

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                      +  +AL  F P  GR +  RC   + F   +D  Y   P ++  A+  L
Sbjct: 314 AAGLAWKVPFLSMAEALEEFRPVPGRME--RCTWGEPFDIFVD--YAHTPDALSRALCSL 369

Query: 361 SQISPHGEGRRIAVLG 376
             ++    GR I V G
Sbjct: 370 RGLT---RGRLICVFG 382


>gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 486

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 158/379 (41%), Gaps = 38/379 (10%)

Query: 21  IVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           I P  F    + G++ DSR +A  + FFA+ G   DG  +   AV++GA  + V T+  A
Sbjct: 12  IEPPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYAPEAVRRGA--LAVVTEQSA 69

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S+   +  +  V DV  AL   +     R   T++A+TG+ GKT+         +S+   
Sbjct: 70  SVPFETAALVKVADVRSALAIASARFYARQPETVVAVTGTSGKTSVAAFARQIWASLGFK 129

Query: 137 YACIGSYN-------NHIGV----PLTLARMPVDVDFGIFELGMSHL-------GEIRFL 178
            A +G+         ++ G+    P++L R  +D   G    G++HL       G  +  
Sbjct: 130 AASVGTLGVVAPDGASYGGLTTPDPISLHRT-LDELAGA---GVTHLALEASSHGLDQHR 185

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKA 237
              VR   A  T ++  HL     +E    AK  +F   L   GT+ ++ D S    +  
Sbjct: 186 LDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVLPADGTVVVDADSSAGHEVID 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A G+K ++S G +      L + +  +  + + +   GK   +    +G   A N L
Sbjct: 246 VAKARGLK-VFSLGFAGET-LHLLEARPEAAATLLRLTFAGKDWALRLPLVGSFQAANAL 303

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           M  G+     A  D    AL       GR +  +    +G    +D  Y   P +++ A+
Sbjct: 304 MAAGLCISTGAAPDAVFAALERLEGAPGRLE--KVGERRGASIFVD--YAHKPDALEKAL 359

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L    P  + R I + G
Sbjct: 360 QAL---RPFTQKRLIVIFG 375


>gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 513

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 37/282 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S  I P   F AIKG   DGH +I  A+  GA L++   +++    +L +P  
Sbjct: 50  VKGITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGAILIIGENELM----NLEVPYL 105

Query: 87  GVDDVLGALNKLA-VAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL ++A +  +  SK  I I ITG+ GKTT    +   L     + + IG+ +
Sbjct: 106 KVKSARKALGQVAKLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSSIGTIH 165

Query: 145 NHIG---------VP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           N I           P   T+ ++ V     +  + +S  G  +     ++   A+   + 
Sbjct: 166 NEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYALFNNLQ 225

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL   + +EE    KA +F+ L+  GT  +N DDS+           G+K I      
Sbjct: 226 HDHLDYHNTMEEYFECKALLFQKLKPNGTAIINSDDSW-----------GLKLI------ 268

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHM 292
           ++   + +K     EQS+  VQ+  K +    V+H  + Y +
Sbjct: 269 EHLTAEGKKILTVGEQSFSNVQILSKELNDVSVMHKNMEYSL 310


>gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila psittaci RD1]
 gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila psittaci 6BC]
          Length = 483

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 178/459 (38%), Gaps = 66/459 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL   +    G +    V  ++ DSR++   + F A KG H DG+DF   A++ G
Sbjct: 1   MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFSHLAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLA--VAARL----RSKATIIAITGSV 117
           A         +A   S+  P   V  ++ + L +L   +AA+       K  ++ ITG+ 
Sbjct: 61  A---------IAVASSIYNPFLPVVQIISSDLPQLEADLAAKYYGHPSQKLCVVGITGTN 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLT------LARM-PVDVD 161
           GKTT   ++     +  K    IG+  + +G          P +      LA M   ++ 
Sbjct: 112 GKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEMVKSNLS 171

Query: 162 FGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + E     L ++ L  + F        + V+T I   HL   S  EE   AK ++F  
Sbjct: 172 AAVMEVSSIGLAVNRLANVHF-------DVGVLTNITLDHLDFHSSFEEYKQAKLKLFSM 224

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L  +G   +N D  +       + A  I    ++G  ++AD++    +     +  ++  
Sbjct: 225 LPSSGLAVVNNDLHYAAQFIEATQAQPI----TYGIEQHADYRASNLRFSPFGTDFDLLY 280

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G++       IG H   N+L  + +    L  D+   I A++      G   R     +
Sbjct: 281 KGETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRG---RLEPVFS 337

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 ID  Y   P ++      L  + P  +GR I V G  C  G+  QS    +A+V
Sbjct: 338 GPCPIYID--YAHTPDALDNVCKTLQALLPQ-DGRLIVVFG--CG-GDRDQSKRKIMAQV 391

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           +  Y        GF V+   +       +  +E   G F
Sbjct: 392 VEKY--------GFAVVTTDNPRGEDPEMIINEICSGFF 422


>gi|268679675|ref|YP_003304106.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617706|gb|ACZ12071.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 476

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 28/281 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
           R    +IAIT S GKT+ K  L   LS     Y    S N   G+   +   +P   D  
Sbjct: 152 RPSMKVIAITASYGKTSIKNFLASILSKEFNVYHTPRSVNTLAGIVKDINNDLPDTCDIY 211

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  +   V PHIAV+  I   H+  F  +E I + K E+     +    
Sbjct: 212 IVEAGARMQGDIDEIARCVNPHIAVVGRIGEQHIEYFKTLENIRNTKMEMIHS-NRLQKA 270

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F++      E            TI SFG       ++++ K   +     + L+GK    
Sbjct: 271 FIHESAQIKE----------TPTILSFGS------EIKEVKASLDGLTFSMLLEGKEEHF 314

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLI 342
               +G   A N+   + +   L   ++   +A+     +E +G  +R   +  G   +I
Sbjct: 315 SASLLGDFNAINLAACVHVARELGMSIEMIQEAM-----RELKGVEHRLQKIEAGGKIII 369

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           D+S+N N   M ++  ++S    H EGR++ V   + E  E
Sbjct: 370 DDSFNGNLEGMLSSYELVS----HYEGRKVIVTPGIVESTE 406


>gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
 gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
          Length = 486

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 149/375 (39%), Gaps = 40/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+ G   DG DF   AV KGA  ++     +  +G   +PV 
Sbjct: 19  IAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEGGLEGLG---VPVV 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
             +D   A    A A   +  A  +A+TG+ GKT+         + +    A +G+    
Sbjct: 76  RSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMGTLGVV 135

Query: 145 -NHIGVPLTLARMP--VDVDFG--------IFELGMSHL-------GEIRFLTHLVRPHI 186
            +  G P      P     D G        + ++G++HL       G  +     V+   
Sbjct: 136 VSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDGVKLSA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIK 245
           A  T     HL     +E   +AK  +F+ L   G +  LN D   F    A +   G +
Sbjct: 196 AGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAVTSG-Q 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLG 301
           +++S G+       L +    + Q  + V+ +G    VVHH      G   A N+L+  G
Sbjct: 255 SVFSVGEEGQGLRLLSRTPTPAGQDLV-VEAEG----VVHHLKLPLAGAFQASNVLVAAG 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D    +KAL       GR +R      +G    +D  Y   P  ++   +VL 
Sbjct: 310 LCIAAGEDSAKVLKALETLEGAAGRLQRVGRG-PKGGEAYVD--YAHTPDGLQ---TVLE 363

Query: 362 QISPHGEGRRIAVLG 376
            + PH  G+ IAV G
Sbjct: 364 ALRPHTAGKLIAVFG 378


>gi|317009250|gb|ADU79830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori India7]
          Length = 493

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213

Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            + +  + +  I E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDNNSEIYIAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|227513548|ref|ZP_03943597.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
 gi|227083421|gb|EEI18733.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
          Length = 443

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 38/283 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L+  LS I  T   IG  +   GVP        +  F ++E  
Sbjct: 105 TSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSGR-GVP--------NARFFVYEAD 155

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R      +P  A++T I   H   +  I+++  A  + F    K G IF   D
Sbjct: 156 -----EYRRHFLATKPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQTKKG-IFAWGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     LKAK        IY +G +   DFQ    K+ ++ S   V+ +GK + E     
Sbjct: 209 DKRLRKLKAKI------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPL 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +      D++   + L  F   +G  +R+      G  T+ID+ Y 
Sbjct: 263 FGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTF---DGVKRRFSERKISG-MTIIDD-YA 317

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
            +P  +KA I    Q            PH   R IA++ D  +
Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360


>gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
 gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
          Length = 508

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 157/391 (40%), Gaps = 66/391 (16%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSIPV 85
           G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ ++V + D+    + +  + +  
Sbjct: 30  GVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSRDLDFYSSDVTYIKVDD 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSY 143
           F +   +   + +      + K  +I +TG+ GK++    + + L    +K  +     +
Sbjct: 90  FNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFF 148

Query: 144 NNHIGVPLTLARMPV--------------------DVDFGIFELGMSH---LGEIRFLTH 180
           ++  G   +L + P                     +V + I E   SH   L   R +  
Sbjct: 149 DDGSG---SLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAILE-STSHGLDLETARLID- 203

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239
            V    AV T I   HL     I+   + K  +F  + +  G   +N DD +    K   
Sbjct: 204 -VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDFYSSDFK--- 259

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +A+     YS  KS  ADF +         S+++ +      E  H G+ Y    N+L +
Sbjct: 260 NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFEFYHKGVKYFANVNLLGS 309

Query: 300 LGIVSILTA----------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             + +++ A          D+   +  L+     +GR       L Q F  +ID  Y   
Sbjct: 310 FNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN--LGQNFSVIID--YAHT 365

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           P +      +  + + +   R I+V G   E
Sbjct: 366 PGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 478

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 141/372 (37%), Gaps = 43/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN    +S  I   + F   +G  +DGH +   AV +GA  V+ N  +      + IPV 
Sbjct: 18  VNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPL-----DIDIPVI 72

Query: 87  GVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D    +L  + A       K   I +TG+ GKTT    L   L+    T A IG+   
Sbjct: 73  MTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQT-TTSAYIGT--- 128

Query: 146 HIGVPLTLARMPV--------------------DVDFGIFELGMSHLGEIRFLTHLVRPH 185
            +G  L  +  P+                    + +F + EL    L + R     V   
Sbjct: 129 -LGAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDR--AGFVSLQ 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT I   HL      +    AK ++ + +   GT  +N DD       A   A G  
Sbjct: 186 IGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDP--HAAAAIERASGRV 243

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + +FG ++  A       +     S  E+++ G+  +V          +N L     + 
Sbjct: 244 NVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLL 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L         AL      +GR +    +LN G   L+D ++NA+  S      +L  + 
Sbjct: 304 SLGWQSSRIAAALQTIVAPDGRAQFL--SLNNGATGLVDYAHNADGLS-----KLLEDVR 356

Query: 365 PHGEGRRIAVLG 376
           P+ +GR I V G
Sbjct: 357 PYTKGRLIVVTG 368


>gi|254779283|ref|YP_003057388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
 gi|254001194|emb|CAX29160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
          Length = 493

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDKSEIYIAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKHLEK 282


>gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
          Length = 486

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 167/427 (39%), Gaps = 64/427 (14%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ I     G V    V  ++ DSR     + F A +G   +G+D+   AV+ GA    
Sbjct: 9   LLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGA---- 64

Query: 70  VNTDMVASIGSLSIPVFGVDDV----LGALNKLAVAARLRSKAT----IIAITGSVGKTT 121
                +A + SL  P   V  +    L AL +  +AAR  +  +    +I +TG+ GKTT
Sbjct: 65  -----IAILSSLYNPFLSVVQIVTEDLTAL-EACLAARFYNDPSKRLDVIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------------------VPLTLARMPV 158
              +    +    +    +G+  + +G                       V   L+   V
Sbjct: 119 VSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVV 178

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +V      +G++ LG +R    L      V+T ++  HL      EE   AK ++F  L 
Sbjct: 179 EVS----SIGLA-LGRVRETEFLA----GVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLP 229

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G   +N D  + +     S A G+    S+   + AD++    K  S  S  ++  QG
Sbjct: 230 EHGVAVVNSDCEYAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQG 285

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                    +G H   N+L  L +V  IL  D    +  +      +G   R    L+  
Sbjct: 286 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKG---RLEPVLSGP 342

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               ID  Y   P ++     +LSQ+ P  +GR I V G  C  G+   S    +A+V  
Sbjct: 343 CPIYID--YAHTPDALDNVCKILSQLLP-ADGRLIIVFG--CG-GDRDHSKRPIMAKVAE 396

Query: 398 LYNISHV 404
            Y  S V
Sbjct: 397 TYGFSVV 403


>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 491

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 179/412 (43%), Gaps = 46/412 (11%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G + +  +  +S DSR I     FF + G  +DGH F   A +KGA  +V +  +     
Sbjct: 19  GTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQFAKMAEEKGAVCLVASKHV----- 73

Query: 80  SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            + IPV  V+DV+  +  LA+          ++I +TG+ GKTTT  ++       KK+ 
Sbjct: 74  DVKIPVVYVEDVIKTMAFLAMRFYHDPSGSMSLIGVTGTNGKTTTTHIIRHLFEKNKKSC 133

Query: 138 ACIGS-----YNNHIGVPLT----------LARMPVDVDFGIFELGMSH---LGEIRFLT 179
             IG+     +  HI  P T          LA+M  +  F       SH   +G ++   
Sbjct: 134 GMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLAKMKEEGVFICTSEVSSHALVMGRVQN-- 191

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTI-FLNYDDSFFELLK 236
             V  ++AV T +   HL     + E   AK+ +F   G    G I  LN DD++ +++ 
Sbjct: 192 --VDFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFAQLGSGNNGKIAILNKDDTYAKVIA 249

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           ++ +A    TI+ +  K  +A+F  +     + ++   +  QG    V+   IG    QN
Sbjct: 250 SRCNA----TIWYYSTKDPSAEFYAKDMVYLASKTEFTLVFQGLEYPVISPLIGEFNVQN 305

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L     L   ++  I+ALS F   EGR +     L  G   ++D  +   P  ++ 
Sbjct: 306 ALAALAAYYALERHLEKGIEALSSFSGVEGRMQTIENDL--GIHAIVD--FAHTPDGLEK 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A++ L +++     R I ++G   + G    S   DL  +   Y+   V+ S
Sbjct: 362 AMAALKKLN---HKRIITMIGH--DGGNRDNSIRQDLGRIALEYSDYVVFTS 408


>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
 gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
          Length = 486

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 139/342 (40%), Gaps = 32/342 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +   +I       V G+  DSR++     + A KG   DGHDFI HA+  
Sbjct: 1   MKTLQDILYGVSIEAIVGATTIPVKGVVFDSRNVKIDFVYVAQKGVQVDGHDFISHAISN 60

Query: 64  GAGLVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA ++V   +  + VA  G   + V      LG L         R K T++ +TG+ GKT
Sbjct: 61  GAKVIVCEFIPAECVA--GVAYVKVENSSKTLGVLASNFYDNPSR-KLTLVGVTGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYAC--------IGSYNNHIGVPLTLARMPVDVDF-GIFELGMSH 171
           T   +L    SS  + YAC        I   N    +  T   + ++     + E G++H
Sbjct: 118 TIASLLYALFSS--EGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVESGVTH 175

Query: 172 L-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                   G  +     +  ++ + + +   HL      +     K + F+ L KT    
Sbjct: 176 CFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDSLPKTAFAL 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD     +   +    +   Y++   ++ADF+     Q  E  +  + L+ +S EV 
Sbjct: 236 TNVDDKNGTYMLQNT----VAKKYTYAIKQHADFK----AQILECQFSGMLLKIQSQEVW 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              IG   AQN+L    + S+L     + +K +S      GR
Sbjct: 288 TSLIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGR 329


>gi|210134942|ref|YP_002301381.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
 gi|210132910|gb|ACJ07901.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
          Length = 493

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDKSEVYIAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
           ligase [Pseudomonas fluorescens SBW25]
          Length = 487

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 56/382 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++   + F A+ G  YDG   I  A+Q+GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAVAYEVEGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAKQLSD--IAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180
           +                 N I V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L A+  
Sbjct: 192 ----DVAVMTNLSRDHLDYHGTMEAYAAAKAKLF-AWNDLKCRVVNLDDAFGRQLAAEDS 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH----GIGYHMAQ 294
                 + S+    ++ +   +  Q +++      V  QG+     HH     +G     
Sbjct: 247 E---ARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGE-----HHLRSTLLGRFNLS 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  +G +  L   +D  ++ L       GR +R    L  G   L+   Y   P +++
Sbjct: 299 NVLAAIGALLGLDYALDEILRVLPKLEGPAGRMQR----LGGGKQPLVVVDYAHTPDALE 354

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
               VL  + PH +G+ + + G
Sbjct: 355 ---KVLEALRPHAKGKLLCLFG 373


>gi|228475935|ref|ZP_04060644.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119]
 gi|228270006|gb|EEK11480.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119]
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 133/307 (43%), Gaps = 50/307 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 101 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 151

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++ASA  E+   ++K   I
Sbjct: 152 E-----ACEYRRHFLSY--HPDYAIMTNIDYDHPDYFKNIDDVASAFQEMANNVKK--AI 202

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD     LKA         IY +G SKN D      +     +  +V + G+  + 
Sbjct: 203 IAWGDDEHLRNLKADV------PIYYYGLSKNDDVYADNIQITENGTQFDVYINGEYYDQ 256

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-- 340
            +    G H  QN L  + I  +   DV+   +AL  F    G  KR     N+ F +  
Sbjct: 257 FLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETF----GGVKR---RFNETFVSKQ 309

Query: 341 -LIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            L+D+ Y  +P  + A I           V++   PH   R  A L +  +   LS++ H
Sbjct: 310 VLVDD-YAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADA--LSKADH 366

Query: 390 IDLAEVL 396
           + L E+ 
Sbjct: 367 VFLCEIF 373


>gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 134

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 19/125 (15%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++P   V
Sbjct: 23  GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 78

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D       LGA+N+ A   R      + A+TGS GKTT KEM    L+SI +T   + +
Sbjct: 79  LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEM----LASILRTRGPVLA 129

Query: 143 YNNHI 147
              H+
Sbjct: 130 TRGHL 134


>gi|253998173|ref|YP_003050236.1| UDP-N-acetylmuramate--L-alanine ligase [Methylovorus sp. SIP3-4]
 gi|313200242|ref|YP_004038900.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
 gi|253984852|gb|ACT49709.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. SIP3-4]
 gi|312439558|gb|ADQ83664.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
          Length = 465

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 152/368 (41%), Gaps = 44/368 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A + +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAVAGTHGKTTTTSLIASILAEAGMDPTFV--------IGGRLEAASANARLGTGEFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P I+V+T I   H+  +    E++  A  E  + L   G   L  
Sbjct: 160 EADESDASFL-HL-SPVISVVTNIDADHMDTYGHDFEKLKGAFVEFLQQLPFWGMAVLCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSME--VV 284
           DD     +         K I  +G S++A  + +  +  +      VQ + G + E  V 
Sbjct: 218 DDPNIRAILPSV----TKPIMPYGFSEDARIRGKNVRADNGTMHFTVQRINGVTTEFDVT 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFF 339
            +  G H   N L  + + S L       IKAL  F   +G G+R+       A N G F
Sbjct: 274 LNLPGNHYVLNALAAIAVASELNVPDAAIIKALREF---KGVGRRFERYGEVPARNGGQF 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TLID+ Y  +P  M+A I+      P   GRR+ +             F  D  +VLS  
Sbjct: 331 TLIDD-YGHHPVEMQAVIAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVLSSA 385

Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +   +S V+ +G   +   D  AL R+I V       + ET   L   I     DGDVV+
Sbjct: 386 DAVLLSDVYPAGEAPIVAADGRALVRAIRVAGKVEPLFVETTAELPEAILGVAQDGDVVI 445

Query: 449 VKSSNSCG 456
           V  + S G
Sbjct: 446 VMGAGSIG 453


>gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 508

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 158/383 (41%), Gaps = 47/383 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS D+R + P   F A+ G H DG  FI +A++KGA  VVV          L +PV 
Sbjct: 29  VTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGAKAVVVEGSYQP---DLQVPVI 85

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            VD+   A ++LA         K  +I +TG+ GKTTT  M++  L S   +   I +  
Sbjct: 86  IVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGKTTTTYMISSMLESADASTGFITTVD 145

Query: 143 ---------YNNHIGVPLT------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                    +  H   P        L RM    V++ + E   SH  ++  L  +    +
Sbjct: 146 YKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAVIE-SSSHGLKLHRLEDVAY-DV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFE--------GLEKTGTIFLNYDDSFFELLKAK 238
           AV T +   HL     +E+    KA +F+        G  K G I  N DD   +L    
Sbjct: 204 AVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCGKWGVI--NLDDPNAQLYIDS 261

Query: 239 SHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       ++++  + +NAD      ++  E     V  +G S E+     G +   N L
Sbjct: 262 TKG----KVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEINLPISGDYNVYNAL 317

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +G+       +D    AL  F    GR +    ++ Q F  +ID ++  +  S++  +
Sbjct: 318 AAIGVAITQNIPIDVCKSALERFTGVPGRMQ--VISMGQPFTVVIDYAHTED--SLEKVL 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCE 380
             L Q +    GR  AV G   E
Sbjct: 374 ITLKQRT---RGRLFAVFGSAGE 393


>gi|317010960|gb|ADU84707.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SouthAfrica7]
          Length = 493

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTTFNVHASPKSVNTLLGIASDI 213

Query: 154 ARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE
Sbjct: 214 NQNLEDSSEIYIAEAGARNKGDIKDITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG 216
           + + 
Sbjct: 274 LLDS 277


>gi|217032142|ref|ZP_03437641.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298736442|ref|YP_003728968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
 gi|216946132|gb|EEC24741.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298355632|emb|CBI66504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
          Length = 493

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQATFNAHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +THL+ PH+ V+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITHLIEPHLVVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|56684727|gb|AAW22050.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori]
          Length = 493

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168
           +IAITGS GKT+TK+ L   L +    +A   S N  +G+   + +   D  +  I E G
Sbjct: 170 VIAITGSFGKTSTKKFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDKSEIYIAEAG 229

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
             + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +   LEK
Sbjct: 230 ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282


>gi|314936164|ref|ZP_07843511.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654783|gb|EFS18528.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 437

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 133/307 (43%), Gaps = 50/307 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++ASA  E+   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDYDHPDYFKNIDDVASAFQEMANNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
               DD     LKA         IY +G SKN D      +     +  +V + G+   +
Sbjct: 201 IAWGDDEHLRNLKADV------PIYYYGLSKNDDVYADNIQITENGTQFDVYINGEYYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-- 340
            +    G H  QN L  + I  +   DV+   +AL  F    G  KR     N+ F +  
Sbjct: 255 FLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETF----GGVKR---RFNETFVSKQ 307

Query: 341 -LIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            L+D+ Y  +P  + A I           V++   PH   R  A L +  +   LS++ H
Sbjct: 308 VLVDD-YAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADA--LSKADH 364

Query: 390 IDLAEVL 396
           + L E+ 
Sbjct: 365 VFLCEIF 371


>gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
 gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
          Length = 463

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 159/360 (44%), Gaps = 37/360 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +++    +A++G+ GKTTT  M+T I L++       +G   N IG          ++  
Sbjct: 111 MKNYENAVAVSGTHGKTTTTSMITEILLAADADPTISVGGILNSIG---------GNIRV 161

Query: 163 GIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           G  EL ++   E    FL+    P I VI  +   HL  F  +++I  +     E L K 
Sbjct: 162 GGPELFVTEACEYTNSFLSFF--PTIEVILNVEADHLDFFKDLDDIRRSFRLFAEKLPKD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGK 279
           G + +N D + +E +   +  L  + I +FGK +++ ++  + +     +   ++ + G+
Sbjct: 220 GILVINSDITDYEKI---TEGLPCRVI-TFGKEESSKYRAEQIRFDELARPVFDLSVDGE 275

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++ V  G+ G H   N L  + +   L   ++   K L  F    G  +R+      G 
Sbjct: 276 TVDTVALGVPGEHNVYNSLAAIAVCMELGISLEMIKKGLWKF---TGTNRRFEKKGELGG 332

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  + A+++               PH   R  A L +  E   LS +  
Sbjct: 333 ITIIDD-YAHHPQEISASLATALNYPHRKLWVVFQPHTYTRTKAFLDEFAEA--LSMADE 389

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + LA++ +     ++ +S   ++   +A  + +  HY  + D +  FI  + + GD+++ 
Sbjct: 390 VILADIYAARETDNLGISSKDIVDRIEA--KGVKAHYIPSFDEIETFILENCIHGDLLIT 447


>gi|119897176|ref|YP_932389.1| UDP-N-acetylmuramate--L-alanine ligase [Azoarcus sp. BH72]
 gi|166222953|sp|A1K3U7|MURC_AZOSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119669589|emb|CAL93502.1| probable UDP-N-acetylmuramate-L-alanine ligase [Azoarcus sp. BH72]
          Length = 467

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 164/382 (42%), Gaps = 48/382 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RL+S    IAI G+ GKTTT  ++   +A  ++  T+  IG   N  G    L +
Sbjct: 98  LAELMRLKSG---IAIAGTHGKTTTTSLVASILAEGAMDPTF-VIGGRLNAAGANARLGK 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL  ++ P I+V+T I   H+  +      +  A  +  
Sbjct: 154 -------GDFLVAEADESDASFL--MLSPVISVVTNIDADHMDTYGHDFARLKQAFVDFL 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + L   G   L  DD     +      L  K +  +G S+ A+ +    +    +   +V
Sbjct: 205 QRLPFYGVAVLCEDDPHVRSIMP----LVSKQVVRYGLSETANIRAENIRAEGGRMIFDV 260

Query: 275 -QLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            ++ G +    +VV +  G H  +N L  + + + +    +  +KAL+ F    G G+R+
Sbjct: 261 LRVNGSTTRLADVVLNLPGLHNVRNALAAIAVATEVQVPDEAIVKALAEF---SGVGRRF 317

Query: 331 R-----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           +      A + G FTLID+ Y  +P  M+A ++      P   GRR+ +           
Sbjct: 318 QRYGEVAAPSGGTFTLIDD-YGHHPVEMEATLAAARGAFP---GRRLVLAFQPHRYTRTR 373

Query: 386 QSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLF 434
             F  D  +VLS  +   ++ V+ +G   +   D  AL R++ V       + E + G+ 
Sbjct: 374 DCFE-DFVKVLSTVDALLLAEVYAAGEAPIVAADGRALSRALRVAGKVEPVFVEDIGGMP 432

Query: 435 LFIQSSLVDGDVVVVKSSNSCG 456
             +  ++ DGDVV+   + S G
Sbjct: 433 QAVLEAVRDGDVVITMGAGSIG 454


>gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii ATCC 27126]
          Length = 521

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 37/238 (15%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + G+++DSR +  + AF AIKG   DG DFI  A+  GA +++  T+  ++ G + 
Sbjct: 22  PDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTEDSSAHGQME 81

Query: 83  -------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  I ++ +  +L AL   A       K T +A+TG+ GKT+T ++LT    ++  
Sbjct: 82  MRDHSVIISLYELPQMLSAL-AAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQLKDALGT 140

Query: 136 TYACIGSYNNHI--GVPLTLARMPV--------------------DVDFGIFELGMSHLG 173
             A IG+  + +  G     +  P                     +V    FE     L 
Sbjct: 141 RSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRHTAFEASSHALV 200

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD 229
           + R  T  V+  IAV T +   HL     +EE   AK  + +  GL+    + LN +D
Sbjct: 201 QGRLGT--VKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQPGLK---AVVLNVND 253


>gi|207092460|ref|ZP_03240247.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 467

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168
           +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I E G
Sbjct: 144 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNKSEIYIAEAG 203

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
             + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +   LEK
Sbjct: 204 ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLEK 256


>gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Weiss]
 gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum MopnTet14]
 gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 483

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 167/427 (39%), Gaps = 64/427 (14%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ I     G V    V  ++ DSR     + F A +G   +G+D+   AV+ GA    
Sbjct: 6   LLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGA---- 61

Query: 70  VNTDMVASIGSLSIPVFGVDDV----LGALNKLAVAARLRSKAT----IIAITGSVGKTT 121
                +A + SL  P   V  +    L AL +  +AAR  +  +    +I +TG+ GKTT
Sbjct: 62  -----IAILSSLYNPFLSVVQIVTEDLTAL-EACLAARFYNDPSKRLDVIGVTGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------------------VPLTLARMPV 158
              +    +    +    +G+  + +G                       V   L+   V
Sbjct: 116 VSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVV 175

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +V      +G++ LG +R    L      V+T ++  HL      EE   AK ++F  L 
Sbjct: 176 EVS----SIGLA-LGRVRETEFLA----GVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLP 226

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G   +N D  + +     S A G+    S+   + AD++    K  S  S  ++  QG
Sbjct: 227 EHGVAVVNSDCEYAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQG 282

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                    +G H   N+L  L +V  IL  D    +  +      +G   R    L+  
Sbjct: 283 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKG---RLEPVLSGP 339

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               ID  Y   P ++     +LSQ+ P  +GR I V G  C  G+   S    +A+V  
Sbjct: 340 CPIYID--YAHTPDALDNVCKILSQLLP-ADGRLIIVFG--CG-GDRDHSKRPIMAKVAE 393

Query: 398 LYNISHV 404
            Y  S V
Sbjct: 394 TYGFSVV 400


>gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
 gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
          Length = 485

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 136/324 (41%), Gaps = 38/324 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPV 85
           V  I  DSR +     FF + G   DGH +I  AV +GA  +V +  +     G L I  
Sbjct: 10  VVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHRGVLYIK- 68

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V++VL  LN++A         K T+I +TGS GKT    M+   LS   K    IG+ 
Sbjct: 69  --VNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKM-GYIGT- 124

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLG-----EIRFLTHLVRPH------------- 185
            N+I     + + P      IF     HL      +++ +T  V  H             
Sbjct: 125 -NNIEYAGVIEQCPYTTPETIF--MQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGVHFD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKA--KSHAL 242
           IA+ T +   HL     +E + ++KA++F  +++ G   LN D+  F+ L+K   + H L
Sbjct: 182 IAIFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAILNTDEVRFYNLVKDSIRCHLL 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 ++G    A    R  +   + S  ++Q+      V    +G     N+L  +  
Sbjct: 242 ------TYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITS 295

Query: 303 VSILTADVDTAIKALSVFHPKEGR 326
           +  L   +D  ++++      +GR
Sbjct: 296 MLALEMPMDQVLESVGYIRGVDGR 319


>gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 537

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 23/235 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +PV 
Sbjct: 37  VTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAVAVLTDPAGAERAAATGLPVL 96

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKK----TYACI 140
            VD+  G +  LA        A +  I ITG+ GKTTT  ++   L +  K        I
Sbjct: 97  AVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTTAYLIEGGLKAAAKHDGGLTGLI 156

Query: 141 GSYNNHIGVPLTLAR--MPVDVD----FGIFELGMSHLGEIRFLTH---LVRP-----HI 186
           G+    IG     +    P   D    F +      H   +   +H   L R       +
Sbjct: 157 GTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHSVVMEVSSHALVLGRVDGCVFDV 216

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240
           AV   ++P H+   SG+E+   AKA++F +   + G I  NYDD +   L  +S 
Sbjct: 217 AVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAGVI--NYDDEYGRRLIEQSE 269


>gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
 gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
          Length = 475

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 189/431 (43%), Gaps = 60/431 (13%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           ++ HA ++  GA +VV +T +      V +  + +IPV     V  AL  LA   RLR  
Sbjct: 54  YVGHASEQVTGANVVVTSTAVKSDNPEVVAAKNRNIPV-----VPRAL-MLAELLRLR-- 105

Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            T IAI G+ GKTTT  ++   +A + +  T+         IG  L  A     +  G F
Sbjct: 106 -TGIAIAGAHGKTTTTSLIASILAAADMDPTFV--------IGGKLEAAGCHAKLGSGEF 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL   ++P +AV+T I   H+  +     ++     E  + L   G   
Sbjct: 157 IVVEADESDASFL--YLQPVLAVVTNIDADHMETYGYDFNKLKQTFVEFLQHLPFYGMAV 214

Query: 225 LNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGK 279
           +  DD+   E++ A +     K+I ++G S++A  +    +  + Q    + + V    +
Sbjct: 215 VCIDDANIREVMPAIT-----KSITTYGLSEDAQVRATNIQHSNHQMKFTAVIGVNGSAR 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            +++  +  G H  QN L  + + + +       ++AL+ F   E R +++   R ++ Q
Sbjct: 270 RLDITLNLPGLHNIQNALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEIRLSM-Q 328

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             FTLID+ Y  +PA M+A +       P   GRR+ V             F  D   VL
Sbjct: 329 KSFTLIDD-YGHHPAEMEATMKAARGAFP---GRRLVVAFQPHRYTRTRDVFE-DFTRVL 383

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           S  ++   + V+ +G   +   D  +L RSI V       Y E +D L + I   + D D
Sbjct: 384 SQADVLLLTEVYPAGEDPIVAADSKSLARSIRVLGKVEPIYIEDIDDLSIAILDVVQDND 443

Query: 446 VVVVKSSNSCG 456
           +V+V  + S  
Sbjct: 444 IVLVMGAGSVA 454


>gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
 gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
          Length = 472

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 27/248 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F ++L+ +     G++P+  + G S DSR I    AF  +KG   DG  +I  A+ KGA 
Sbjct: 7   FLEMLEELNPRLSGVLPE-LIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEALAKGAR 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
           L++    +      ++IP   +DD+  A   LA    A +     IIA+TG+ GK++T  
Sbjct: 66  LLLCEEFL-----DVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNGKSSTAY 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELG 168
           ++   L+ + K+ A IG+    +G  +  + +                    ++ + E  
Sbjct: 121 IIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEYVVLEAS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R   + +     + T ++  HL     +E   SAK  +F+  +    I +N D
Sbjct: 181 SHGLDQQRL--YGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDYDSKIKI-VNSD 237

Query: 229 DSFFELLK 236
           D++ + L+
Sbjct: 238 DAYGKRLR 245


>gi|108563149|ref|YP_627465.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
 gi|107836922|gb|ABF84791.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
          Length = 493

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168
           +IAITGS GKT+TK  L   L +    +A   S N  +G+   + +   D  +  I E G
Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEIYIAEAG 229

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
             + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +   LEK
Sbjct: 230 ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282


>gi|227510539|ref|ZP_03940588.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190191|gb|EEI70258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 443

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 116/283 (40%), Gaps = 38/283 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L+  LS I  T   IG  +   GVP        +  F ++E  
Sbjct: 105 TSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSGR-GVP--------NARFFVYEAD 155

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P  A++T I   H   +  I+++  A  + F    K G IF   D
Sbjct: 156 -----EYRRHFLATEPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQTKKG-IFAWGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     LKAK        IY +G +   DFQ    K+ ++ S   V+ +GK + E     
Sbjct: 209 DKRLRQLKAKV------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPL 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +      D++   + L  F   +G  +R+      G  T+ID+ Y 
Sbjct: 263 FGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTF---DGVKRRFSERKISG-MTIIDD-YA 317

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
            +P  +KA I    Q            PH   R IA++ D  +
Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360


>gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer RA-YM]
 gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 486

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 148/373 (39%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR    +  + AIKG   DGH FI  AV+KGA ++V+  + +  I   +I   
Sbjct: 23  VSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKGAKVIVL--EDLPEILDETITYI 80

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V ++   L +LA         K  ++ +TG+ GKT+   +L     ++    A I +  
Sbjct: 81  KVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSVSTLLFDVFKNLGYPSALISTVE 140

Query: 145 NHIG---VPLT------------LAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG    P T            LA+ +    ++   E+    + + R  T  +   +A 
Sbjct: 141 YRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEVSSHGIHQNR--TEGLHFKVAG 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGI 244
            T I   HL       E  + K   F+ L  +     N DD       +  KAK     +
Sbjct: 199 FTNITHDHLDYHKTFLEYLNTKKSFFDNLPDSAVAITNLDDKNGLVMLQNTKAKKKTYAL 258

Query: 245 KTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           KT+  + G+    DF           + M +   GK  EV     G     N+L+  GI 
Sbjct: 259 KTLSDYHGRLLEVDF-----------NGMLLNFNGK--EVWTSLTGKFNVYNLLLVFGIA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    + A+S      GR +  +     G F ++D  Y   P +++  +  +++I
Sbjct: 306 RELGFDEVEILTAISQLKRVNGRFETIKS--EGGIFFVVD--YAHTPDALENILDSINEI 361

Query: 364 SPHGEGRRIAVLG 376
               E R I+V G
Sbjct: 362 RTKNE-RLISVFG 373


>gi|208434651|ref|YP_002266317.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
 gi|208432580|gb|ACI27451.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
          Length = 470

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 135 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDI 190

Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            + +  + +  I E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE
Sbjct: 191 NQNLDNNSEIYIAEAGARNKGDIKEITLLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 250

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 251 LLDSKRLEK 259


>gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 42/373 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIPVFG 87
           +  DSR + P + F A+ G   DG  FI  A + GAG++V   D    A+  +    V  
Sbjct: 19  VRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVCRADSEEAAAAATAGCRVVH 78

Query: 88  VDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
             D   AL +LA  AR  +      I+ +TG+ GKTT   +L    +        +G+  
Sbjct: 79  HADPREALWRLA-QARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKLGVMGTVS 137

Query: 143 --YNNHI-GVPLT----------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +  H+   PLT          LA M  D VD  + E+    + + R     V    A 
Sbjct: 138 YRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCG--VPFSGAA 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTI 247
            T ++  HL     +E    AKA +F  L +   ++ +N DD++   L          T 
Sbjct: 196 FTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLEL-----CPTA 250

Query: 248 YSFGKSKNADFQLRKWKQ----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            SFG  K A  +   W +     +    + + L+    E+    +G   A N+L    + 
Sbjct: 251 LSFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVA 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  D + A KAL  F    GR +R      QG    +D  Y   P +++   +VL  +
Sbjct: 311 LEMGIDPE-AFKALESFTGVSGRLERVENP--QGLNVFVD--YAHTPDALE---NVLKAL 362

Query: 364 SPHGEGRRIAVLG 376
              G  R I V G
Sbjct: 363 RDAGFERVITVFG 375


>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
 gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
          Length = 482

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 156/405 (38%), Gaps = 66/405 (16%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            TF +L++ I+  +  ++ +  VN  G+ IDSR +     F AIKG   DGH +I  A++
Sbjct: 1   MTFSELIKGIK--TSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIE 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKAT----IIAITGSV 117
            GA  ++          +++  V    +D +G      VA R     +    ++ +TG+ 
Sbjct: 59  LGAAAILCEEAPQQPQPNVTYAVVKSTEDEVG-----KVATRFFGDPSKHLKLVGVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLT------------LARM-PVDVD 161
           GKTT   +L      +      + +  N I    +P              LA+M     +
Sbjct: 114 GKTTVATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCE 173

Query: 162 FGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +   E     +    +G + F          + T +   HL      E   +AK   F+G
Sbjct: 174 YVFMECSSHAIAQKRIGGLTFTG-------GIFTNLTRDHLDYHKTFENYRNAKKSFFDG 226

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L K+     N DD    ++   + A    ++ ++     ADF+ R          +E   
Sbjct: 227 LPKSAFAITNADDKNGMVMVQNTKA----SVKTYSIQSMADFKAR---------IIECHF 273

Query: 277 QGKSMEVVHHGIGYHMA-----QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           QG  + +    +G          N+L   G   +L    +  + A+S  H   GR    +
Sbjct: 274 QGMYLAIDGQEVGVQFTGKFNVSNLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQ 333

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
               +GF  ++D  Y   P ++K  +  + ++   G+G  I V G
Sbjct: 334 SP--EGFTAIVD--YAHTPDALKNVLLAIHEVD--GKGHIITVCG 372


>gi|308184524|ref|YP_003928657.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
 gi|308060444|gb|ADO02340.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
          Length = 493

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 154/364 (42%), Gaps = 46/364 (12%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +              D    E    K+    ++ I  +    +    +      S    +
Sbjct: 274 LL-------------DSKRLE----KAFCYSVEKIKPYAPKDSPLIDV-----SSLVKNI 311

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------DVDTAIKALSVFHPKEG 325
           +  L+G S E + +G+       +L      +I +A        ++T      VF  K  
Sbjct: 312 QSTLKGTSFETLINGVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVFELKPI 371

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-EL 384
             +     +NQ    +ID+S+N N   M   I    +++   +GR++ V   + E   E 
Sbjct: 372 NHRLQLLEVNQKI--IIDDSFNGNLKGMLEGI----RLASLHQGRKVIVTPGLVESNTES 425

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +++    + EV  +  I+    S    +A K  +P+ I +     ++ +   +Q++ + G
Sbjct: 426 NEALAQKIDEVFDVAIITGELNS--KTIASKLKIPQKILLKDKAQLENI---LQATTIQG 480

Query: 445 DVVV 448
           D+++
Sbjct: 481 DLIL 484


>gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 506

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 20/226 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF+  AV  GA  V+ +        +  +PV 
Sbjct: 35  VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVAVLTDPTGAERAAATGLPVL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D    + +LA          +  I ITG+ GKTTT  ++   L  ++ T   IG+  
Sbjct: 95  VVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLKGVRST-GLIGTVE 153

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             I V 
Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDIGVF 212

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           T ++P H+   SG+E+   AKA++F   E++    +N DD +   L
Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLFT-PERSRLGVVNLDDEYGRRL 257


>gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
 gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
          Length = 492

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 138/361 (38%), Gaps = 41/361 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   +     ++P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA  V   +     +  +TG+ GKT+  + L  A   + +    IG+  N    
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188
            L         PVDV   ++                  L  S +  + F +       A+
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245
            T +   HL     +E   + K+ +F   GL+      +N DD +  EL+          
Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDEYGAELVGRLKKDCPDL 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +Y +G S+ AD  +  +   S+      Q      +     +G   AQN+   + ++  
Sbjct: 259 AVYGYGFSEQADICITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++  ++ L+   P  G   R  C +N G   L+   Y   P +++ A+S L +I P
Sbjct: 319 NGYPLNNVLEVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374

Query: 366 H 366
            
Sbjct: 375 Q 375


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 33/231 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77
           +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D               +
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +   +  V  V ++   L+++A A  A    K T++ +TG+ GKTT+ ++L    + +  
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179
             A +G+  N +           G  + + R   D      DF   E+    L + R   
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             +   +AV T ++  HL     +EE A AK  +F  L+    + LN DD 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDE 251


>gi|227524691|ref|ZP_03954740.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088175|gb|EEI23487.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 443

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 116/283 (40%), Gaps = 38/283 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L+  LS I  T   IG  +   GVP        +  F ++E  
Sbjct: 105 TSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSGR-GVP--------NARFFVYEAD 155

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P  A++T I   H   +  I+++  A  + F    K G IF   D
Sbjct: 156 -----EYRRHFLATEPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQTKKG-IFAWGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     LKAK        IY +G +   DFQ    K+ ++ S   V+ +GK + E     
Sbjct: 209 DKRLRKLKAKV------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPL 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +      D++   + L  F   +G  +R+      G  T+ID+ Y 
Sbjct: 263 FGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTF---DGVKRRFSERKISG-MTIIDD-YA 317

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
            +P  +KA I    Q            PH   R IA++ D  +
Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360


>gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK49]
          Length = 459

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIVGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I  L     P IAVIT + P HL     +E+ A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEAL----HPQIAVITNLMPTHLDYHGSLEDYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVMPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
          Length = 463

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 49/373 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S+ +     F AIKG   DGH+F+  A+ +GA  V+V  D    +G     + 
Sbjct: 7   VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKD----VGITDNRIV 62

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITG---------------SVGKTTTKEMLTIA 129
            V D   AL +L  A   +   K  +I ITG               + G   T  + TI 
Sbjct: 63  KVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLVGTIY 122

Query: 130 LSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGIFELGMSH-LGEIR-FLTHLVRPHI 186
              + K Y   G    H  V   TL +M  D    +     SH L + R + TH    HI
Sbjct: 123 YRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHF---HI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T ++  HL     +EE   AK  +F+       + +N DD + + +  +     I  
Sbjct: 180 VGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYEYAV-VNSDDEYGKRIVRELKGRAI-- 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM---LMTLGIV 303
             ++G+    DF++  +    E S ++V  +GK+ +   + +G   A N+   ++   +V
Sbjct: 237 --TYGRE--GDFKILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLV 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            I    ++  +K   V+ P  GR + YR     GF  ++D  Y   P +++  +  + ++
Sbjct: 293 GIEVQAIEEGLK--KVYVP--GRFETYR---GDGFLVIVD--YAHTPDALENVLKSIRRL 343

Query: 364 SPHGEGRRIAVLG 376
           S    GR I + G
Sbjct: 344 ST---GRVITLFG 353


>gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
          Length = 465

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 30/265 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A + +  T+  IG      G   T AR+  D ++ + E  
Sbjct: 108 IAVAGTHGKTTTTSLVASILAAADLDPTF-VIGGLLKSAG---TNARLG-DGEYLVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL   + P +AV+T I   H+  + G +EE+  A  +  + L   G   L  
Sbjct: 163 ES---DASFL--YLAPVMAVVTNIDADHMDTYGGSLEELRRAFLQFLQRLPFYGLAVLCT 217

Query: 228 DDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEV 283
           DD     L  + +S  LG      +G S +AD Q R W Q   +S  EV  ++ G+++  
Sbjct: 218 DDPLVRGLIPELRSPVLG------YGFSASADLQARHWHQVGGRSRFEVWRRVDGEAVHW 271

Query: 284 VHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +   +   G H   N L  +GI S +    +T   AL+ F    G G+R+    +    T
Sbjct: 272 LDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADFR---GVGRRFEILGDFAGIT 328

Query: 341 LIDESYNANPASMKAAISVLSQISP 365
           ++D+ Y  +P  ++A ++    + P
Sbjct: 329 IVDD-YGHHPRELEATLAAARDMWP 352


>gi|254491328|ref|ZP_05104508.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxidans
           DMS010]
 gi|224463457|gb|EEF79726.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxydans
           DMS010]
          Length = 473

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 48/369 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS   +  T+  IG   N  G   + AR+      G + + 
Sbjct: 115 IAVAGTHGKTTTTSLIAALLSEGELDPTF-VIGGRLNSAG---SNARLGT----GRYLVA 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFL 225
            +   +  FL   ++P IAV+T I   H++ + G  +    KA   E L      G   +
Sbjct: 167 EADESDASFL--YLQPMIAVVTNIDEDHMATYEG--DFGKLKATFIEFLHHLPFYGLAVM 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEV 283
             DD   + L A+      +   ++G+ ++AD+QL    Q   QS+  V  +  G+   +
Sbjct: 223 CLDDPVVKELLAEV----TRPFITYGQDEDADYQLVDLTQHQGQSFFTVVEKHSGERYPI 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-----GF 338
             +  G H A N    + +   L  ++    +AL  F   +G G+R+   L Q     G 
Sbjct: 279 TLNMPGLHNALNATAAMAVARNLAVNIAACQQALLKF---DGIGRRFNL-LGQVDAEGGK 334

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            TLID+ Y  +P  + A ++      P     R+ V+            F  D A VLS 
Sbjct: 335 ATLIDD-YGHHPTEIAATLAATRGGWPD---NRVVVVFQPHRYSRTRDLFE-DFAHVLSA 389

Query: 399 YNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            ++     V+ +G   +A  DA  L R+I +       ++E  + LF  +   L DGDV+
Sbjct: 390 VDVLVMLEVYPAGESKIAGADARSLCRAIRLRGQVEPVFAENQEELFALLPGLLKDGDVL 449

Query: 448 VVKSSNSCG 456
           +   +   G
Sbjct: 450 LTLGAGDIG 458


>gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1087]
          Length = 459

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLIGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVMPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces avermitilis MA-4680]
 gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Streptomyces avermitilis
           MA-4680]
          Length = 506

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 20/226 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +        +  +PV 
Sbjct: 35  VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVAVLTDPTGADRAAATGLPVL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD  G + +LA          +  I ITG+ GKTTT  ++   L +++ T   IG+  
Sbjct: 95  VVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLIEGGLRTVRST-GLIGTVE 153

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             IAV 
Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VDAVAMEVSSHALVLGRVDGCVFDIAVF 212

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             ++P H+   S +E+   AKA++F   +++    +N+DD +   L
Sbjct: 213 NNLSPEHMEFHSDMEDYFRAKAQLFT-PQRSKLGVVNFDDEYGRRL 257


>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 498

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 64/402 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIP-- 84
           I+ DSR + P   F A++G   DGH F   AV++GA  V+V     D+ ASI  + +P  
Sbjct: 26  ITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEEPVADVPASIPQVVVPDT 85

Query: 85  ----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                   D + G+ ++      LR    +I +TG+ GKTT   ++   L S  +    I
Sbjct: 86  RHWSALVADRLFGSPSR-----ELR----VIGVTGTNGKTTVTHIVRHLLDSTGRKAGLI 136

Query: 141 GSYNNHIG-----VPLT---------LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+    +G     +P T         L R  VD      + E+    L E R     V  
Sbjct: 137 GTVGAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEVSSHALVERRAAG--VSF 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKTGTIF--LNYDDSFFELLK 236
             A  T +   HL     +E  A+AKA +F       G +   +++  +N DD +  ++ 
Sbjct: 195 ACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWSPVMA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S A     I ++G  + AD + R  +  +  +   V     + E+    IG     N 
Sbjct: 255 EASAA----PILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFNVYNT 310

Query: 297 LMTLGIV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           L  + I     +  +++   I++          G+  R    Q F   +D  Y   P  +
Sbjct: 311 LAAVAIALVEGLAASEIQEGIRSYPSVP-----GRMERIDEGQPFSVFVD--YAHTPDGL 363

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +  ++ + + +P    R + V+G  C  G+  ++    +AEV
Sbjct: 364 ENVLASVREFAP---ARVLVVVG--C-GGDRDRTKRPKMAEV 399


>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
 gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
          Length = 454

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P + F AI     DGHD+I  A+  GA      T ++A  G+ S+    V+
Sbjct: 5   LKTDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGA------TKIIAEHGNYSVETVIVE 58

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +    LN+        L     +I +TG+ GKTTT  M+   LS +K+  A +G+   + 
Sbjct: 59  NTRKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGFYY 118

Query: 148 G-VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------------AVITTIA 193
           G +   +     DVD     L  +    + +    V  H                 T + 
Sbjct: 119 GNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVAFTNLT 178

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             HL     +E  A+AK ++FE         +N DD
Sbjct: 179 QDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDD 214


>gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 495

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 159/373 (42%), Gaps = 35/373 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S+DSR +     F A+ G    G DFI +A+++GA  ++ +    A I    I   
Sbjct: 25  ITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTDQKG-AEIAKKEIEAS 83

Query: 87  GVDDVLG--ALNKLAVAARLRSKAT---IIAITGSVGKTT----TKE---MLTIALSSIK 134
           G   V+       LA AA L   A     +A+TG+ GKT+    T++   +L    +++ 
Sbjct: 84  GAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTRQIWALLGFEAANVG 143

Query: 135 KTYACIGSYNNHIG----VPLTLARMPVDVD-FGIFELGM---SHLGEIRFLTHLVRPHI 186
            T    G+Y+   G     P+TL R+  D+   GI  + M   SH  E R L  + +   
Sbjct: 144 TT-GVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGLEQRRLDGM-QLAA 201

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T     HL   +  E   +AKA +F   L + G   +N +D+ F+ +   +   G +
Sbjct: 202 AGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQDISRLAEKRG-Q 260

Query: 246 TIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + S G+ +NA  ++  ++++   +    E     ++ EV    IG   A+N+LM  G+ 
Sbjct: 261 EVLSVGRDENASIRIIAQRFEPMGQTVLFE--YNDRTFEVKLPLIGGFQAENVLMAAGLA 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               AD +     L       GR          G    +D  Y   P ++  A   L   
Sbjct: 319 IASGADANEIFGVLPQLKTVRGR-MELAATRKNGASIFVD--YAHTPDALATACRAL--- 372

Query: 364 SPHGEGRRIAVLG 376
            PH  GR I V G
Sbjct: 373 RPHVLGRLIVVFG 385


>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
 gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
          Length = 482

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 48/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  +S+ I     F AI G +YDGHDFI  A+++GAG VV+    +   G L I V 
Sbjct: 24  IESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALERGAG-VVIGEKALDLGGKLYIRVK 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L AL+          K  +I +TG+ GKTT   +++  L  I      IG+    
Sbjct: 83  DSRKAL-ALSSAWFYGYPADKLKLIGVTGTSGKTTVTYLISEMLKDIGICTGIIGT---- 137

Query: 147 IGVPLTLARMPVD----VDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAV 188
           IG  L   ++P          + +L    + E I +L   V  H             + V
Sbjct: 138 IGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAMEVSSHSLKLQRVEGIKFDVGV 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247
            T +   HL      E+  ++K ++F    ++    +N DD      ++    L I  I 
Sbjct: 198 FTNLTQDHLDFHKTFEDYFNSKKKLF---SQSKQAVINIDD------ESGKRLLSIINIP 248

Query: 248 -YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y++G  K AD +    +  +     ++  + K   V +   G     N L  +     L
Sbjct: 249 RYTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFYSTPGLFSVYNSLAAITAGVAL 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQI 363
              +D  I  L     K+ +G   R  L   NQG   ++D  Y   P  +K   +VL  I
Sbjct: 309 GFPIDDLINTL-----KKAKGVPGRFELVENNQGIIVIVD--YAHKPDGLK---NVLLTI 358

Query: 364 SPHGEGRRIAVLG 376
                G+ I V G
Sbjct: 359 REFCTGKIITVFG 371


>gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
 gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
          Length = 501

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 148/378 (39%), Gaps = 48/378 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   +AF A  G   DG  ++  A+++GA  V+V  D     G  +  + G  
Sbjct: 26  LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVLVEAD-----GLQAFDLSG-- 78

Query: 90  DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136
           D + AL  L  A  L           +  ++A+TG+ GKTTT   L  ALS +    +  
Sbjct: 79  DSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTG 138

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+    +GVP  L                 R   D       +  S +G +     
Sbjct: 139 CALVGTLG--VGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLD 196

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK 238
             +  +A+ T     HL     ++    AKA++F+  GL       +N DD+    L A+
Sbjct: 197 GSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAA---VVNIDDAHGARLWAR 253

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +  ++S      A  Q +      E     V   G S+ +    +G +   N+L 
Sbjct: 254 LQGRAMD-VWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLG 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L   ++ A++A +   P  GR ++    + +    L+   Y   P +++ A+ 
Sbjct: 313 VLATLRCLGLTLEQAVQACADLEPVPGRMQQ----IVKPGQPLVAVDYAHTPDALEKALR 368

Query: 359 VLSQISPHGEGRRIAVLG 376
            L   +   +G+   V G
Sbjct: 369 ALQPAARQRQGKLWCVFG 386


>gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
 gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
          Length = 480

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 153/371 (41%), Gaps = 41/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR++ P + FFA+ G   DG  FI  AV+ GA  VV      A     S+PV 
Sbjct: 22  VAGVAVDSRAVKPGDVFFALGGHKTDGARFIEAAVKAGAVAVVTGHPHTA-----SVPVV 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---Y 143
             DD   AL   A     R   TI A+TG+ GKT+          S+    A +G+    
Sbjct: 77  VADDPRRALALAAAVVYPRQPRTIAAVTGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIV 136

Query: 144 NNHIGVPLTLARM-PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIAVITTI 192
           + H  V  +L    PV +   I EL   G++HL       G  +     VR      T +
Sbjct: 137 SRHRNVYGSLTTPDPVALHRAIDELAGDGVTHLALEASSHGLDQHRLDGVRITATAFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIYS 249
           +  H+     +E   + K  +F  L   G    I  +++ S   +  A++H L + T+  
Sbjct: 197 SRDHMDYHPTVEHYLATKLRLFTDLAPEGAPAVIAADHEHSATVIAAARTHKLNVMTVGR 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+      +L +         M V+ +G++  +    +G    +N L+  G+V     D
Sbjct: 257 QGEG----IRLVEAAIDGFGQRMTVEHRGQNWRLRLPLVGEFQIENALVAAGLVISTGGD 312

Query: 310 VDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              A  AL      +GR    G R+      G    +D ++  +     A +  L  + P
Sbjct: 313 AAQAFAALEHLEGAKGRLELVGDRF------GAPVFVDYAHKPD-----ALVKALEALRP 361

Query: 366 HGEGRRIAVLG 376
           + +GR + V G
Sbjct: 362 YAKGRLVVVFG 372


>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
 gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
          Length = 500

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 150/374 (40%), Gaps = 40/374 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR+  P   F A++G   DGH F+  A + GA   VV   +   +  + +P  
Sbjct: 24  VTDVTADSRTAGPGSLFIALRGHTVDGHAFVDEARRSGAVAAVVEDCLDTPLPQIVVP-- 81

Query: 87  GVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D    A    AV  R  S+A  +I +TG+ GKTT   ++   L +       IG+   
Sbjct: 82  --DTRRAAAVLAAVFFRHPSRAMRVIGVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQT 139

Query: 146 HIG---------VP--LTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVIT 190
            IG          P  + L R+   + D G+    M   SH  E+  +    R H AV T
Sbjct: 140 RIGDRSSGAVNTTPEAVELQRLFAQMRDAGVSHAVMEVSSHALELDRVAG-TRFHTAVFT 198

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFE------GLEKTGTIF--LNYDDSFFELLKAKSHAL 242
            +   HL     +E    AK ++F       G  +    F  +N DD   + +  ++ A 
Sbjct: 199 NLTQDHLDFHGSMEAYREAKGKLFARLGNEYGDTRADQAFAVVNLDDPVGKWMARQTTAQ 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    ++G  + AD + R+ +  +       +++G+   V     G     N L  +G 
Sbjct: 259 TV----TYGVDRPADLRAREVEVDTRGVRFVAEIEGRRTRVHVPLPGRFSVYNTLAAMGA 314

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I   D+D     L+      GR +R      Q F  ++D  Y   P S+   +  L +
Sbjct: 315 GWIQGLDLDWMADQLARVSGVPGRMERVDAG--QPFGVVVD--YAHTPDSLDNVLQALRE 370

Query: 363 ISPHGEGRRIAVLG 376
           ++    GR I V G
Sbjct: 371 VA---SGRLIVVFG 381


>gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. D2]
 gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
 gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
          Length = 482

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 161/394 (40%), Gaps = 47/394 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            ++   DM         PV G     V D   A+ K+A        SK  ++ +TG+ GK
Sbjct: 63  AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164
           TT   +L             I +  N+I             P+T    L RM  +    +
Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F    SH    + ++ L +    + T +   HL     +E    AK + F+ L K     
Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD    ++     +     +Y++     +DF+ R      E  +  + L   + E+ 
Sbjct: 235 TNLDDKNGLVMTQNIRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D 
Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344

Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376
           ++  +     A I+VL+ I     G+G+ I V+G
Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373


>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
 gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
          Length = 493

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 144/360 (40%), Gaps = 31/360 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88
           + +DSR + P + F A +G + DG ++I  A+  GA +V  ++ D  A      I   GV
Sbjct: 27  LRMDSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSGDGFAWRPEWQIANLGV 86

Query: 89  DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             +    N   +AA+L        +   +TG+ GKT+  + L  A   +    A IG+  
Sbjct: 87  PHL--KQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVG 144

Query: 145 NHIGVPLT----LARMPVDVDFGI------------FELGMSHLGEIRFLTHLVRPHIAV 188
           N     L         PV V   +             E+    L + R +        A+
Sbjct: 145 NGFWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPF--SSAI 202

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TI 247
            T +   HL     +    ++KA++F   +      +N DD F   L A   A      +
Sbjct: 203 FTNLTRDHLDYHGSMAAYGASKAKLFY-WQSLQHAIINTDDEFGRELAAGLRADRPNLNV 261

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G ++ AD ++ ++    +   +       S E+    +G   AQN+   +G++    
Sbjct: 262 YGYGFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEG 321

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L+   P  G   R  C +++    L+   Y   P +++ A++ L +I P G
Sbjct: 322 YSLPDVLRVLAQIRPATG---RMDC-ISRAGRPLVVVDYAHTPDALEKALATLREIKPQG 377


>gi|71282429|ref|YP_271112.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
 gi|109892700|sp|Q47VR0|MURC_COLP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71148169|gb|AAZ28642.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
          Length = 503

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 53/371 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++    A   +  T+  IG   N  G   T AR+        + + 
Sbjct: 131 IAIAGTHGKTTTTSLIASIFAQGKLDPTF-VIGGLLNSAG---TNARL----GSSRYLVA 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++VIT I   H+  + G  E++     E    L   G   +  
Sbjct: 183 EADESDASFL-HL-QPMVSVITNIDADHMETYQGDFEKLKDTYIEFLHNLPFYGLAVVCI 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           D+    ELL   S     + + ++G SK+AD +   ++Q    S   V+++G+  +E+  
Sbjct: 241 DNPVVRELLPRIS-----RQVITYGFSKDADVRAVNYQQNGAVSHFTVEVEGQEPLEMSV 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTL 341
           +  G H   N L  + +      + +   KAL+ F   EG G+R+    +     G   L
Sbjct: 296 NLPGQHNVLNALAGVAVAKDEGVNDEAICKALTEF---EGIGRRFEKLTDFSTAAGDMVL 352

Query: 342 IDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           +D+ Y  +P+ +KA I  + Q            PH   R   +  D  E+  LS+   +D
Sbjct: 353 VDD-YGHHPSEVKATILAMRQGWPDKRLVMVFQPHRYSRTRDLYEDFVEV--LSE---VD 406

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +L +Y      +S     A   +L RSI +       Y   +D L   + + L D D
Sbjct: 407 CLFLLDVYAAGETPISS----ADSKSLARSIRLRGQIEPVYVSDVDKLPQLLATQLQDND 462

Query: 446 VVVVKSSNSCG 456
           +V+ + + S G
Sbjct: 463 MVITQGAGSIG 473


>gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK355]
          Length = 459

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQAQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 487

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 152/377 (40%), Gaps = 53/377 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR  +  + F AI+G   DGHD+I  AV +GA L ++  +M   I +  I   
Sbjct: 24  ITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGA-LAIICEEMPQQIVN-GITYV 81

Query: 87  GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEML----------TIAL 130
            V D   AL  +A       +A L+    +I ITG+ GKTT   +L          T  L
Sbjct: 82  KVADTSSALATIASNYYGNPSANLK----LIGITGTNGKTTIASLLYQLFKKAGYKTGLL 137

Query: 131 SSIKKTYACIGSYNNH-----IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           S++K     I     H     + +   LA M    V++   E+    + + R  T  +  
Sbjct: 138 STVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVSSHGIHQKR--TEGLHF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              + T ++  HL       E    K + F+ L KT    +N DD    ++   +     
Sbjct: 196 EGGIFTNLSHDHLDYHETFAEYRDVKKKFFDELPKTAFALVNNDDKNGPVMVQNT----- 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299
                  K+K   + L+ +     Q  +E QL G     +  EV    IG   A N+L  
Sbjct: 251 -------KAKKVTYALKSYADYRAQ-ILENQLSGLLLKVQDQEVWVKLIGSFNAYNLLAI 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +L  D   A++ LS      G   R++  +++G  T I + Y   P ++K  +  
Sbjct: 303 FAAAELLELDQMEALQLLSELESVSG---RFQYFISEGNVTAIVD-YAHTPDALKNVLET 358

Query: 360 LSQISPHGEGRRIAVLG 376
           ++ I    E   I V+G
Sbjct: 359 INDIRTKNE-ELITVIG 374


>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 488

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 145/371 (39%), Gaps = 39/371 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  DSR +     F  I G ++DGH FI  A+++G+ +VVV  D+     +  + V 
Sbjct: 25  IRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSRVVVVEKDVKT---AKDVTVI 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   AL  LA         K  ++ I G+ GKTTT  ++   L    K  A  G+  
Sbjct: 82  KVPNTRYALAVLANRFYGYPSKKLQVVGIAGTNGKTTTTYLVRDVLKKAGKKVALFGTIE 141

Query: 145 NHIG---------VPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +G          P +L         V+ +F    + +S    +          I V T
Sbjct: 142 YDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVMEVSTHATVLDRVTGCEFDIGVFT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I+  H+     +E    A+ + F  L +TG    +N DD + E +   +       I +
Sbjct: 202 NISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVINIDDPYAEHIIKNTRT----EILT 257

Query: 250 FG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSI 305
           +G   KNAD +    K     S   V              G +   N L  +G+     +
Sbjct: 258 YGINDKNADIRAFDIKVSKTGSRFNVITPLGETVFYLRLPGRYNVYNALAAVGVGISEGL 317

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              ++  AI   SV     GR +R  C   Q F  ++D  Y   P +++ A+     +S 
Sbjct: 318 NLNEIREAIAHASV----PGRFERIDCG--QSFDVIVD--YAHTPDALQKALETARGLS- 368

Query: 366 HGEGRRIAVLG 376
             EGR I V G
Sbjct: 369 --EGRIIVVFG 377


>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 495

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 153/403 (37%), Gaps = 52/403 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I   P   +  +  DSR I P   F  I G H D H FI +  + 
Sbjct: 2   MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61

Query: 64  GAGLVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAIT 114
           GA  V+    N D+ A I  L +P     D+  AL+ +        A  +R    ++ IT
Sbjct: 62  GARAVLTQRENVDVPAGISVLRVP-----DLNAALDIIVPYFYDYPARSMR----VVGIT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD 159
           G+ GKTTT  ++   L +  +    +G+                 + + +   LA M   
Sbjct: 113 GTNGKTTTSYLVRAILRAAGRRVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRAR 172

Query: 160 -VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--- 215
            +D  + E+    L + R     +    AV T +   HL     +E  A AKA +FE   
Sbjct: 173 GMDTVVMEVSSHALDQGRVAG--IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVS 230

Query: 216 --GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
             G++   T  +N DD+   +++A +       + S+G ++ A    R  +   +   M 
Sbjct: 231 APGVKAGKTAVINADDAAGPVMRAHTTC----PVLSYGVTQQAALTARDIRLAQDGMTMR 286

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +    +   +  H  G     N+L   G         D    AL  F    GR +  R  
Sbjct: 287 LVHGDEECALTLHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRA- 345

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Q F  ++D  Y   P  M+  +     ++    GR I V G
Sbjct: 346 -GQDFSVIVD--YAHTPDGMENVLRTARAVT---RGRIIVVFG 382


>gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 507

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 155/378 (41%), Gaps = 34/378 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S  + P   F AIKG   DG+ +   A+  GA L++   D      +L++P  
Sbjct: 24  VKGITDNSNEVRPGYIFIAIKGHKEDGNIYTQQAILNGAILIIGEDDFT----NLTVPYL 79

Query: 87  GVDDVLGALNKLAVA-ARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +    L ++A    +  SK  I I ITG+ GKTT    +   L     + + IG+  
Sbjct: 80  KVKNARKTLGQVAKKFYKDPSKNKIMIGITGTNGKTTIGFFIKQLLEKQGYSVSSIGTIY 139

Query: 145 NHIG---------VP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           N I           P   T+ ++       +  + +S  G  +     ++   A+   + 
Sbjct: 140 NEINGKRIQSVNTTPNAKTINQLLTASTDQVVVMEVSSQGLAQNRLEGIQFDYALFNNLQ 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +EE    KA +FE L+  GT  +NY+D + + L  +  A G K I + G+ 
Sbjct: 200 HDHLDYHGTMEEYFECKALLFEKLKLDGTAIINYNDRWGKKLTERLTAQGKKVI-TVGEE 258

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                Q+       E + + V+ + K   +     G H  +N+ M+  +   L    +  
Sbjct: 259 PTNQVQIL----AKELNNVSVRYKNKEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQV 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESY--NANPASMKAAIS--------VLSQI 363
              +S F    GR + +  A       ++D ++  +A   S+  AIS        V    
Sbjct: 315 TTYMSQFSGIAGRFEIFHLA--NKVTVVVDYAHTPDALATSINTAISNGAKRIITVFGFA 372

Query: 364 SPHGEGRRIAVLGDMCEM 381
               E +R A+L ++C +
Sbjct: 373 GNRDESKRKAMLENVCRL 390


>gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
 gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
          Length = 487

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 155/382 (40%), Gaps = 56/382 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    D    +    +P+
Sbjct: 17  LIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVAYEVDGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R   + +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAKQLSD--IAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180
           +                 N I V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV+T ++  HL     +E  A+AKA++F          +N DD F   L A+  
Sbjct: 192 ----DVAVMTNLSRDHLDYHGTMEAYAAAKAKLF-AWNDLKCRVVNLDDEFGRHLAAQDS 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + + YS   S         +  C E  + +   +G    +V     +H+   +L   
Sbjct: 247 ESRLIS-YSLQDSS-------AYLYCREAQFND---EGVRATLVTPQGEHHLRSTLLGRF 295

Query: 301 GIVSILTA-----DVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            + ++L A      +D A+  +    PK EG   R +  L  G   L+   Y   P +++
Sbjct: 296 NLSNVLAAIGALLGLDYALDEILNVLPKLEGPAGRMQ-RLGGGEQPLVVVDYAHTPDALE 354

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
               VL  + PH +G+ + + G
Sbjct: 355 ---KVLEALRPHAKGKLLCLFG 373


>gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
 gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
          Length = 497

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 158/379 (41%), Gaps = 47/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA--------GLVVVNTDMVASI 78
           + GI++DSR +     F A+ G    G +FI +A+++GA        G  +   D+  S 
Sbjct: 26  ITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGARIAERDLAESD 85

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT------------KEML 126
            +L I     +D   AL   A     +    + A+TG+ GKT+             +E +
Sbjct: 86  AALVI----AEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWMLVGREAV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHL 181
            +  + ++ +Y+      +    P+TL RM  ++ + GI    M   SH L + R    +
Sbjct: 142 NLGTTGVEGSYSA--PLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRRLDGVM 199

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240
           +R  +   T +   HL     +EE   AKA +F   L       +N D      +   + 
Sbjct: 200 LR--VGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDMAEVAA 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  + + G  ++A+ ++   +  ++   M     G+  +V  + IG   A+N+L+  
Sbjct: 258 DRGLD-VLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAENVLVAA 316

Query: 301 GIVSILTADVD---TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           G+  +   D D   T + ALS  H +     R       G    +D ++  +     A  
Sbjct: 317 GMAILSGEDPDQVFTVLPALSTVHGRMELAARR----TNGAAVFVDYAHTPD-----AVA 367

Query: 358 SVLSQISPHGEGRRIAVLG 376
           + L  + PH  GR +AV+G
Sbjct: 368 TALKALRPHVLGRLVAVIG 386


>gi|302561121|ref|ZP_07313463.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478739|gb|EFL41832.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 195

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 23/190 (12%)

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESY 346
           G H   N L    +   L    D   +ALS    + G   R+R  + +     T+++++Y
Sbjct: 7   GEHHVSNALAAAAVAHELGMSADEIARALS----EAGSLSRWRMEVTERPDGVTVVNDAY 62

Query: 347 NANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           NANP SMKAA+  L  +   G+GRR  AVLG M E+G+ + + H  +  +    N+S + 
Sbjct: 63  NANPESMKAALRALVAM---GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLV 119

Query: 405 --------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                   WL    + A  +       VH S+    + L ++S L  GDVV+VK+S S G
Sbjct: 120 AVGGREAAWL---QLGAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVG 175

Query: 457 FYRLINLLLE 466
              +   LLE
Sbjct: 176 LESVAQALLE 185


>gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
 gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
          Length = 454

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 32/288 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140
           +IPV    ++L  L KL            IA++GS GKTTT  M+  I +++  +    I
Sbjct: 89  NIPVIPRGEMLAELFKLKEG---------IAVSGSHGKTTTTSMIAEILINAGLEPTVII 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G           L R+  +   G  EL +S   E       ++P +AVIT +   HL  +
Sbjct: 140 GG---------RLKRLGTNAKLGRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFY 190

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E +  A  +    +   G   +N DD     L  KSH    + + ++G +  A  + 
Sbjct: 191 ENFERVKEAFEQFMNSVPFYGFAVVNLDDPTLAQLVKKSH----ERVITYGINSPALVRA 246

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +       +    V+ +GK +  +H GI G H   N L   G+   L    +   K+L  
Sbjct: 247 KNLYLKEGRYEFGVEFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEE 306

Query: 320 FHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISP 365
           F     R    R  L +G++  + + + Y  +P  +KA I+ L  + P
Sbjct: 307 F-----RNAERRLEL-KGYYKNSPVYDDYGHHPTEIKAVINSLRDMYP 348


>gi|328957052|ref|YP_004374438.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
 gi|328673376|gb|AEB29422.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
          Length = 443

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 126/305 (41%), Gaps = 48/305 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A+   + T +A+TGS GKT+T  +L   LS +K T   IG    H GVP        D D
Sbjct: 98  AQFIGQFTSVAVTGSHGKTSTTGLLAHVLSPLKNTSYLIGDGTGH-GVP--------DAD 148

Query: 162 FGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F I E       E R  FL +  +P  A++T I   H   +S + ++  A   +   ++K
Sbjct: 149 FFILE-----ACEYRRHFLAY--QPDYAIMTNIDFDHPDYYSSLSDVFDAFQSMAVQVKK 201

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              I    DD   + L+A      +  +Y +G   + DFQ +   + +  S  +V ++  
Sbjct: 202 --AIVACGDDEQLQKLQA-----NVPILY-YGFEDHNDFQAKNMTRSTTGSTFDVYVRD- 252

Query: 280 SMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             E   H      G H   N L  + I      D +  ++ L  F     +G + R +  
Sbjct: 253 --EFYGHFEIPTFGKHNILNALSVIAICQYENIDKEGVMENLKTF-----KGVKRRFSEK 305

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELS 385
           Q    +I + Y  +P+ ++A I    Q            PH   R +A+L D  E   L+
Sbjct: 306 QMLDMVIIDDYAHHPSEIRATIDAARQKYPNKEIIAIFQPHTFTRTVALLSDFAESLNLA 365

Query: 386 QSFHI 390
            S ++
Sbjct: 366 DSIYL 370


>gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
 gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
          Length = 472

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 29/289 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HI 147
           L++    A L     +  I G+ GKT+T  MLT+AL    +  ++A  G  N      H 
Sbjct: 103 LHRAEALAALMEGHRVACIAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGANAHH 162

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G              GIF +  +   +  FL++   P +AVIT I P HL +    +   
Sbjct: 163 G------------QGGIF-VAEADESDGSFLSY--SPSVAVITNIEPDHLDHHGTADAYH 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQC 266
           +   +    +E  GT+ +  DD     L  ++ A G++ + Y    +  AD ++  +   
Sbjct: 208 AVFHDFVRRIEPGGTLIVCADDEAASELATRAEADGVRVLRYGRAATGEADARVLDYSPG 267

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +   + + L+G+ + +     G HMA N +  L     L AD++  ++ L+ F    G 
Sbjct: 268 EDGGTVRIVLRGEQLRMGVAVPGEHMAFNAVAALLAGLELGADLEGLVEGLAAFG---GV 324

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +R+      G   + D+ Y  +P  + A +  + Q +  G GR + V 
Sbjct: 325 RRRFEFKGRAGDVRVYDD-YAHHPTEVSAQLRAVRQAA--GRGRVVVVF 370


>gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
 gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
          Length = 483

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 53/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR + P   F A++G   DG  +I  A+++GA  +V  TD  A + + S+PV 
Sbjct: 21  ITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQAIV--TDCNAVLENFSVPVL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142
            V DV  +L   A          ++A+TG+ GKT+    L    + +    A IG+    
Sbjct: 79  RVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVVSFLRQIWTHVGLCAASIGTVGIV 138

Query: 143 ---YNNHIGV----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               N+        P+ L R+  +     V     E     L + R     VR   A  T
Sbjct: 139 SPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEASSHGLDQSRL--DGVRLTAAAFT 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKSHALGI 244
            +   H+     +E+   AK  +F+ L       L + D  +       + KA+   L I
Sbjct: 197 NLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFADDIYSQKVIDIVTKARRRILTI 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                F      + Q  + KQC E   +E  +    + +     G     N LM  G+  
Sbjct: 257 GRKGKFITINRIEHQ--RLKQCVE-CRVENNIYTFDLPLA----GNFQVTNALMAAGLA- 308

Query: 305 ILTADVDTAIKALSVFHPKE-GRGKRYRCALNQGFFTLIDESYNANPASM------KAAI 357
                + T +    VFH  E  +G         G   L+ ++ N  P  +      +A  
Sbjct: 309 -----IATGVSPKKVFHSLEILQGA-------PGRLELVGKTENNAPVYIDYAHKPEALE 356

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VL  + P  +GR I V G
Sbjct: 357 QVLLSVRPFTQGRLILVFG 375


>gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 476

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 32/296 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSI 83
            G+   S ++ P + F A+ G   DG  FI  AV +GA +VV    V     A + +L++
Sbjct: 17  TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVHKEGVAVAPAAGVSTLAV 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P       LG L + A     R    I+ +TG+ GKTTT  ++   LS+       IG+ 
Sbjct: 77  P--NPAQTLGVLARAACGTESRLP-RIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIGTV 133

Query: 144 N-----NHIGVPLT----------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +       +   +T          + RM  D V+  + E+    L + R  T  +   + 
Sbjct: 134 HCSWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQER--TAGLPMAVG 191

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           V + +   HL     +E    AK+ +F +G  +     +N DD +   LK          
Sbjct: 192 VFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRLKMMR-----PD 246

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +  FG  S++A+ + R     +E   + +   G + E+    +G H A N+L  +G
Sbjct: 247 LLGFGLDSEDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVG 302


>gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
 gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
          Length = 483

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 160/387 (41%), Gaps = 37/387 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+ +    +    +  VN I  DSR +   + F  + G   DGHD+   A++ GA +V
Sbjct: 5   DLLKGVDYELLEGTVEKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAGAKVV 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
           +    +   I S  + V  V++   AL  ++            +I +TG+ GKTTT  +L
Sbjct: 65  LCEKKI--DIKSEGVTVLLVNEGRKALATMSANYYGHPTKSLKLIGVTGTNGKTTTVYLL 122

Query: 127 TIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVDV-----DFGIFELGMS 170
              L    K    +G+  N+IG          P  L L ++  D+     ++ + E+   
Sbjct: 123 KSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVMEVSSH 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L   R   +     + + T +   HL      +   +AK ++F   E++    +N DD 
Sbjct: 183 SLQLDR--VYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLF---ERSKASVINVDDD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   +      L  K I ++  + N+DF+        ++  +  ++ G+    V    G 
Sbjct: 238 YGYRVLKDVEKLENKEIKTYSINNNSDFKASDL--MLKEGDIHFKINGEEFNSVLP--GE 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           +   N L  +G +SIL    ++  K  L V  P  GR +R     +  +  +ID  +   
Sbjct: 294 YNVYNALGAVGAMSILGISNESIRKGLLDVVVP--GRCERIGYKYDIPYDIIID--FAHT 349

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P  +K   ++L  +    + R IAV G
Sbjct: 350 PDGLK---NILETLKGFTKNRLIAVYG 373


>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
 gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
          Length = 495

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 153/403 (37%), Gaps = 52/403 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I   P   +  +  DSR I P   F  I G H D H FI +  + 
Sbjct: 2   MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61

Query: 64  GAGLVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAIT 114
           GA  V+    N D+ A I  L +P     D+  AL+ +        A  +R    ++ IT
Sbjct: 62  GARAVLTQRENVDVPAGISVLRVP-----DLNAALDIIVPYFYDYPARSMR----VVGIT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD 159
           G+ GKTTT  ++   L +  +    +G+                 + + +   LA M   
Sbjct: 113 GTNGKTTTSYLVRAILRAAGRRVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRAR 172

Query: 160 -VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--- 215
            +D  + E+    L + R     +    AV T +   HL     +E  A AKA +FE   
Sbjct: 173 GMDTVVMEVSSHALDQGRVAG--IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVS 230

Query: 216 --GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
             G++   T  +N DD+   +++A +       + S+G ++ A    R  +   +   M 
Sbjct: 231 APGVKAGKTAVINADDAAGAVMRAHTTC----PVLSYGVTQQAALTARDVRLAQDGMTMR 286

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +    +   +  H  G     N+L   G         D    AL  F    GR +  R  
Sbjct: 287 LVHGDEECALTLHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRA- 345

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Q F  ++D  Y   P  M+  +     ++    GR I V G
Sbjct: 346 -GQDFSVIVD--YAHTPDGMENVLRTARAVT---RGRIIVVFG 382


>gi|308182899|ref|YP_003927026.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
 gi|308065084|gb|ADO06976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
          Length = 493

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
 gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
          Length = 474

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 150/362 (41%), Gaps = 42/362 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S +S++I   +AFFAIK    +G+DFI  A++KGA LV+ +        + +  V 
Sbjct: 14  VKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKK-----NTTNKVI 64

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142
            V+D+   L++       +   T+IA+TG+ GK++    +    S I +  A IG+    
Sbjct: 65  FVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKAASIGTIGVE 124

Query: 143 ------YNNHIGVPLTLARMPVD----------VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                 +N  IG   T   +             +D+  FE     L + R     ++ ++
Sbjct: 125 VFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRLGD--LKVNV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T+ +  HL      E    AK ++F + L K G   LN D    E +K     L   
Sbjct: 183 ACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSD---IEEIKFIKDYLDKH 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I       N + ++ K     +   +      K+ +     IG   A N+L+    V  
Sbjct: 240 KIKYLCVGANGNCKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAGPSVYY 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            + D    I AL+     +GR +R    +N+   T I   Y   P +++ A++ L  I  
Sbjct: 300 TSFDFSKVINALTKVKAVKGRMER----VNR---TNIFIDYAHTPDALEKALTELKNIKA 352

Query: 366 HG 367
            G
Sbjct: 353 KG 354


>gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
          Length = 484

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 33/369 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS DSR + P   FFA+ G   DG  +   A ++GA  V + T   +++G   IPV 
Sbjct: 22  VTGISSDSRQVKPGVIFFALAGSKADGSAYAADAARRGA--VAIVTAKGSTVGGHPIPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSIKKTYAC 139
            VDD   AL   A         T++A+TG+ GKT+         E    A +SI  T   
Sbjct: 80  AVDDPRLALALGAARFFGNQPQTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVV 139

Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
               N +  +    P+ L ++  ++ D G+    M   SH  + R L   V+      T 
Sbjct: 140 APGRNEYGSLTTPDPVALHQLLKELADAGVTHASMEASSHGLDQRRLDG-VKLAAGGFTN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIY 248
           +   H+     +E+   AK  +F+ L   G    IF +   S   +  A++  L + T+ 
Sbjct: 199 LGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAARAAGLEVLTV- 257

Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                ++ DF +L++ +    +   EV+  G   E+     G     N L++ G+   ++
Sbjct: 258 ----GRHGDFLRLKRVEHERHRQRAEVEANGVLYEIDLPLAGDFQISNALVSAGLA--IS 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             + TA KAL      +G   R            +   Y   P +++   +VL+ + P  
Sbjct: 312 TGIPTA-KALMSLEKLKGAPGRLDLVGTTANGAPVYVDYAHKPDALE---NVLTSVRPFT 367

Query: 368 EGRRIAVLG 376
            GR + V G
Sbjct: 368 TGRVMVVFG 376


>gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS223]
 gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS223]
          Length = 499

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 28/233 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80
           N +++DSR+I   + F A+ G   DG  FI  A+  GA  V+V+TD     G        
Sbjct: 21  NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHRDNA 80

Query: 81  ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134
              + I VF +   + A+         +S  T   +I ITG+ GKT+T +++   ++S+ 
Sbjct: 81  EHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140

Query: 135 KTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTH 180
           +  A +G+  N +              +TL R   D +     +  + +S  G ++    
Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            V   +AV T +   HL     +E  A+AK  +F      G   LN DD+  E
Sbjct: 201 AVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDTVGE 252


>gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
 gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
          Length = 493

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 44/308 (14%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  + G+ +DSR   P + +F + G  +DGHDF+   + KG    +V+   +  +    
Sbjct: 18  PEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVK-AIVHAKPIEHMHK-G 75

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC- 139
           +    V++V   LN++A            +  +TG+ GK+T   ++    S     + C 
Sbjct: 76  VAYIQVENVNRTLNRIASLFYQHPSRYMKVFGVTGTNGKSTITSIIQDVYSHF---HPCG 132

Query: 140 -IGSYNNHIG---VPLTLARM-PVDVDFGIFEL---GM--------SHLGEI-RFLTHLV 182
            IG+     G   +P +L    P+ +   + ++   GM        SH  E+ R ++  V
Sbjct: 133 YIGTIAIRYGDVELPPSLTTPDPILIHKSMADMRAAGMEACALEVSSHGLELGRVMS--V 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IA+ + +   HL     IE    AK ++F  L+  G   LN DD++++         
Sbjct: 191 DFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTNLKSDGVAVLNRDDAYYQ--------- 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300
                 +F    N        K  S+   M++Q+Q  G    ++HH   Y +  N++   
Sbjct: 242 ------AFADCTNGRLVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEKSYTIKTNLVAMY 295

Query: 301 GIVSILTA 308
            I ++L A
Sbjct: 296 NIYNLLGA 303


>gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 487

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V         +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVAGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  + G L+  A+A R     +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAGQLS--AIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F   +    + +N DD F   L A      +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRV-INLDDDFGRELAAVKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +KAL       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|77917785|ref|YP_355600.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543868|gb|ABA87430.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
          Length = 419

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R   K  I+A+TGS GKTT    L   L      YA +   N    +   + +M     +
Sbjct: 33  RYLRKTKILAVTGSCGKTTATYFLGRILGECGPCYAGV-HRNTSRAIYKNMRKMRTSYRY 91

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+G+   G++      + P+I ++TTI   H ++F   E  A+ K  +   L  +GT
Sbjct: 92  LVQEMGVGFPGDMAKNIRALPPYIGIVTTIGLDHYTSFRNREGTAAEKGTLIAALPPSGT 151

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
             LN DD     + +++ A    +I ++G S++ D +
Sbjct: 152 AVLNADDPHVMAMASQTQA----SILTYGCSEHVDVR 184


>gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 487

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 153/381 (40%), Gaps = 54/381 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++   + F A+ G  +DG D I  A+++GA  V         +    +P+
Sbjct: 17  LIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAVAYEVQGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180
           +                 N I V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV+T ++  HL     ++    AKA++F          +N DD F   L A+  
Sbjct: 192 ----DVAVLTNLSRDHLDYHGTMQAYGEAKAKLF-AWNDLKCRVINLDDEFGRQLAAEKR 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH----GIGYHMAQN 295
              + T YS  +   A   +R+ +   E      V  QG+     HH     +G     N
Sbjct: 247 ESRLIT-YSL-EDAGAYLYVRQAQFNDEGVRATLVTPQGE-----HHLRSTLLGRFNLSN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  +G +  L   +D  +K L       GR +R    L  G   L+   Y   P +++ 
Sbjct: 300 VLAAIGALLGLDYALDEILKVLPKLEGPAGRMQR----LGGGTQPLVVVDYAHTPDALE- 354

Query: 356 AISVLSQISPHGEGRRIAVLG 376
              VL+ + PH +G+ + + G
Sbjct: 355 --KVLTALRPHAKGKLLCLFG 373


>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           [Rhizobium etli CIAT 652]
 gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CIAT 652]
          Length = 506

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 40/376 (10%)

Query: 23  PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G   ++G+S DSR++AP  AF A+ G   DG  FI  A  +GA + + +  + A    
Sbjct: 41  PAGLLDISGLSSDSRNVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQPVDA---- 96

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134
            SIPV  V +    L+  A     R   T++A+TG+ GKT+    T+++   A   +++ 
Sbjct: 97  -SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155

Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRP 184
            T   +    N  G      P++L ++  ++ D G+    M   SH L + R     V+ 
Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKL 213

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHA- 241
             A  T +   H+     +E   +AK  +F+ L   G   + + D  +  + +KA   A 
Sbjct: 214 SAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSRQAVKAAVDAG 273

Query: 242 LGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L ++T+      +  D+  L++ +    +   E+ +  +  EV     G     N L+  
Sbjct: 274 LDVRTV-----GRKGDYLTLKRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAA 328

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+          A+ AL       GR          G    +D  Y   P +++   +VL
Sbjct: 329 GLAMSTGVVPKVAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVL 382

Query: 361 SQISPHGEGRRIAVLG 376
           + + P   GR + V G
Sbjct: 383 NSVRPFTTGRVVVVFG 398


>gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 25/278 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPV 158
           AR+  + T IAI G+ GKTTT  M  IAL+ +K        IG     IG    L     
Sbjct: 99  ARMMDRQTGIAIAGAHGKTTTTSM--IALTLVKNNLDPTVLIGGELTDIGGNAKLG---- 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +G + +  +   +  FL  L+RP+I V+T I   HL  +   E+I  A ++    + 
Sbjct: 153 ---YGQYLVAEADESDGSFL--LLRPNIIVVTNIENDHLDYYKTEEKITEAFSKFIRKIP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   L  DD     LK  S  L         KS +AD+ +R       +S +EV   G
Sbjct: 208 SDGMAVLCTDD---RQLKHMSTQLKRPCKTYSVKSTDADYTIRNMITDGPKSKVEVYENG 264

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             + ++   + G H   N L  + +   +  D D   +ALS F   +G  +R++    + 
Sbjct: 265 TLLGILELLVPGLHNISNALAVVAVGRHIGLDFDKIAEALSTF---KGAQRRFQLIGIEK 321

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              ++D+ Y  +P+ ++A +    Q      GR IAV 
Sbjct: 322 EVQVVDD-YAHHPSEIRATLKAARQAHA---GRIIAVF 355


>gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
 gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
          Length = 493

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 167/395 (42%), Gaps = 46/395 (11%)

Query: 12  QAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           QA+   S+G+  +G  N    G+++DSR +     F A+ G    G +FI +A++ GA  
Sbjct: 4   QAVPLSSLGLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAA 63

Query: 68  VVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ +        D++AS G   + V   D    AL + A        AT+IA+TG+ GKT
Sbjct: 64  VLTDATGAAMAADLMASAG---VAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKT 120

Query: 121 TTKEM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDF-GIFELGM 169
           +         + + LS++   T    G++   +      P+TL R   +    GI    M
Sbjct: 121 SVSTFVRQIWIEMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAM 180

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
              SH  + R L   V    A  T     HL   +  +    AKA +F   L + GT  +
Sbjct: 181 EASSHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVI 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     + A + A G + + S G+    D  L   +  +    +    +GK+ +   
Sbjct: 240 NIDDPKGIDMAAIARARGCE-VLSVGRD-GGDLHLTGQRFDATGQDLRFDWRGKTYQKRL 297

Query: 286 HGIGYHMAQNMLMTLGIV---SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTL 341
           + IG   A N+L+  G+V       ADV   I  L+       RG+    A  + G    
Sbjct: 298 NLIGGFQADNVLLACGLVIACGAKPADVFDTIPHLTTV-----RGRMQLAATRDNGGAVF 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D ++  +  S     + L  + PH  GR +A++G
Sbjct: 353 VDYAHTPDAIS-----TALKAMRPHVMGRLVAIVG 382


>gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK72]
          Length = 459

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+  AL++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQN----GLLSGNIGYPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +E  A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|315586591|gb|ADU40972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 35A]
          Length = 493

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 494

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 134/326 (41%), Gaps = 39/326 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H F  + V +G G+VVVN   ++  ++  + +P
Sbjct: 23  VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKGNVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      + T   +TG+ GKT+   M+ +    + K  A +G+
Sbjct: 83  -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH----LGEIRFLTHLVRP 184
               +           P T+A     +  VD +     + +S     LG +R     V  
Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F + L + + 
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVTP 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++++G +  A F  +  K+  +    E      S  V    +G     N++  +
Sbjct: 254 Y----EVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAM 309

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326
             V     +++  I A++   P EGR
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGR 335


>gi|15611744|ref|NP_223395.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori J99]
 gi|4155222|gb|AAD06244.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
          Length = 493

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|308062061|gb|ADO03949.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Cuz20]
          Length = 493

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+ K  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSIKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  D  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSDIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 480

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 146/370 (39%), Gaps = 30/370 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           + G++ DSR + P   F A KG   DG  F+  AV+  A  V+  T+   ++ +L  P  
Sbjct: 12  IEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATNAAEAVRALVPPTV 71

Query: 85  -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V   D+     +K+A     R   TI+A+TG+ GKT+    +     +     A +G+ 
Sbjct: 72  AVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAAGHPAASLGTL 131

Query: 144 -------NNHIGV----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                   ++ G+    P+ L +   D     + +   E     L + R     VR   A
Sbjct: 132 GIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRL--DGVRLTAA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     IE+   AK  +F E L   G + ++  + + + + A +   G+  
Sbjct: 190 AFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAIAEERGLP- 248

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +++ G++   D +L   +       + V+      +V    IG     N L+  G+    
Sbjct: 249 VFTVGETGK-DLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAAGLAITA 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D   A++AL       GR          G    +D  Y   P ++  A++ L    P 
Sbjct: 308 GIDAGAALRALENLKGAPGR-LELAGTTPAGGMVFVD--YAHKPDALDKALAAL---KPF 361

Query: 367 GEGRRIAVLG 376
            EG    V+G
Sbjct: 362 AEGSLSVVVG 371


>gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
 gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
          Length = 483

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 146/381 (38%), Gaps = 57/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR I P   F A+KG   DG +++  A+++GA ++V + + V    SL +PV 
Sbjct: 21  ITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIVTDHNFVFE-NSL-VPVV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V +V  +L  +A A    S+  I +A+TG+ GKT+        +  I K   C  +   
Sbjct: 79  RVLNVRHSL-AIAAARFYNSQPEIMVAVTGTSGKTSVVSF----IRQIWKYVGCCAASIG 133

Query: 146 HIGV---------------PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185
            +GV               P+ L R+  +     V     E     L + R     VR  
Sbjct: 134 TVGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRI--DGVRLA 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKS 239
            A  T +   H+     IE+   AK  +F  L       L + D  +       + +A  
Sbjct: 192 AAAFTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVRRAHR 251

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L I     F      + Q  + KQC E   M   +    + +V    G     N LM 
Sbjct: 252 QVLTIGRTGKFITLNRVEHQ--RLKQCVE-CRMGNNIYTFDLPLV----GDFQVANALMA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKA 355
            G+     A  D   ++L       GR    GK        G    +D  Y   P +++ 
Sbjct: 305 AGLAIATRASPDMVFRSLEKLQGAPGRLELVGK-----TEDGAPVYVD--YAHKPEALE- 356

Query: 356 AISVLSQISPHGEGRRIAVLG 376
              VL  + P  +GR I V G
Sbjct: 357 --QVLLSVRPFTQGRLILVFG 375


>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
 gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 150/366 (40%), Gaps = 28/366 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+++DSR++     F A+ G   DG  FI  A  KGA  V+ ++D V       +PV 
Sbjct: 22  ISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAVAVLTSSDAVVET---DLPVI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
             D+   +  K+A     +   T++A+TG+ GKT+    L    ++     A IG+    
Sbjct: 79  RADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSIASFLRQIWTATGLKAASIGTTGVV 138

Query: 144 ---NNHIGV-----PLTLARMPVDVDF-GIFELGM--SHLGEIRFLTHLVRPHIAVITTI 192
               N  G      P+ LA +   ++  G+    M  S  G  +F    VR      T +
Sbjct: 139 SPSRNDYGTLTTPDPVALAELLASLEGEGVTHASMEASSHGIDQFRLDGVRLAAGGFTNL 198

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSF 250
              HL     +E   +AK  +F   L K     +N DD +    +A   A G+   + + 
Sbjct: 199 GHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINTDDQWSG--RAIEVATGVGCDVRTV 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G++ +    L++ +   E+   EV+       VV    G     N L+  G+  +    V
Sbjct: 257 GRNGSL-LALKRLEHERERQVAEVKTPDGIQRVVLPLAGEFQMSNALVAAGLAIVTGTPV 315

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A++ L       GR ++       G    +D  Y   P +++    VL  + P   GR
Sbjct: 316 KAALETLENLKGASGRLEKAGMTAG-GVPVFVD--YAHKPEALE---HVLRAVRPFTTGR 369

Query: 371 RIAVLG 376
            I V+G
Sbjct: 370 VILVMG 375


>gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G++ID R +AP   F A  G  ++G DFI  AV  GA  VV   D         
Sbjct: 15  PNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPDAVAAGAVAVVARPDA-------- 66

Query: 83  IPVFGVDDVLGALNKLA---VAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             V G   V  A  + A   +AAR   R  AT +A+TG+ GKT+T EM            
Sbjct: 67  -KVDGAVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNA 125

Query: 138 ACIGSY--NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVR 183
           A IG+      +    T    P  V F     G+   G++H        G  ++ T  + 
Sbjct: 126 ASIGTLGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYRTEGLP 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              A  T ++  HL     +E   +AK  +F E ++  G   +  DD+    +   + A 
Sbjct: 186 VKAAAFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARAR 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            ++ + + G++  A   LR   +   Q    + +     + +V    IG + A N L+  
Sbjct: 246 DVR-VLTVGQAGEA---LRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAA 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V     DV   +  L+   P  GR +R   A   G    +D  Y   P +++AA+  L
Sbjct: 302 GLVIATGGDVALTLANLARLQPVRGRLERAAIA-RSGAPIYVD--YAHTPDAIEAALDAL 358

Query: 361 SQISPHGEGRRIAVLG 376
               PH  GR I V G
Sbjct: 359 ---RPHATGRLILVFG 371


>gi|294783653|ref|ZP_06748977.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480531|gb|EFG28308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 432

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 178/431 (41%), Gaps = 58/431 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H D  +F +    K  G+     D V  +    I V  +D++ 
Sbjct: 32  DKKAMTSEEAM-----QHLDNIEFFI----KSPGIPY--NDFVKEVQKRGIKV--LDEIE 78

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + V   L++K  IIAITG+ GK+TT    T  +S +         Y  +IG  L+
Sbjct: 79  VAYNYM-VEKNLKTK--IIAITGTNGKSTT----TAKISDLLNHAGYKACYAGNIGRSLS 131

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A +   D+DF   EL    L  +       RP+I++I  + P H+  ++  +E    K 
Sbjct: 132 EALLHEKDLDFVSLELSSFQLENVENF----RPYISMIINMGPDHIERYNSFDEYYDTKF 187

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +  ++      N DD   E    ++  +  K I S  KSK A+  +   K    + +
Sbjct: 188 NIAKNQDENQYFIENIDDVEIE---KRAKQIKAKRI-SVSKSKEANVYVEDNKIYVGKDF 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + ++    S++      G H  +N L  +    IL  D +   + L V  P E R + + 
Sbjct: 244 I-IEADKLSLK------GIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELF- 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N G    I++S   N  S K AI              I + G   +  +L+      
Sbjct: 296 --FNYGDVKFINDSKATNVDSTKFAI--------QANKDSILICGGYDKGVDLAP----- 340

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLV-DGDV 446
           LAE++   NI  V+L G     ++  L +    +  +H  ET++   L ++     D D 
Sbjct: 341 LAEMIK-ENIKEVYLIGVIADKIETELKKVGYEASKIHKLETVENSLLDMKKRFTKDSDE 399

Query: 447 VVVKSSNSCGF 457
           V++ S  +  +
Sbjct: 400 VILLSPATSSY 410


>gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1056]
          Length = 459

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A     +  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----AVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|315443923|ref|YP_004076802.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315262226|gb|ADT98967.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 475

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 32/314 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV ARL    T + +TG+ GKT+T  M+ +AL       ++A  G       N H G 
Sbjct: 107 RPAVLARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSFAVGGDLGQAGTNAHHGS 166

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             T      + D  + E                 P +AV+T I   HL  +  +E   + 
Sbjct: 167 GSTFVAEADESDGSLLEY---------------SPDVAVVTNIEADHLDFYGTVENYTAV 211

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             +  + ++  G + +  DD     L  ++ ALGI+ +  +G +   D  L  W Q    
Sbjct: 212 FDQFVDRIKPGGALVVCVDDPGAAALAERTAALGIR-VLRYGSAPGLDATLLDWSQLGTG 270

Query: 270 SWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  E+ ++ +           G HMA N L  L   +   A++D  +  L+ F   +G  
Sbjct: 271 AVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAATQAGAEIDAVLDGLAGF---DGVR 327

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQ 386
           +R+      G   + D+ Y  +P  ++AAI+ L  ++    G R +AV      +   ++
Sbjct: 328 RRFELVGTAGGVRVFDD-YAHHPTEVRAAITALRAVAEQTPGARTVAVF--QPHLYSRTE 384

Query: 387 SFHIDLAEVLSLYN 400
           +F  + A  LS  +
Sbjct: 385 TFATEFAASLSTAD 398


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 141/357 (39%), Gaps = 25/357 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I+P   V+GI+ DSR +     F A  G H DG D+I  A+ KGA  V+ ++        
Sbjct: 381 IIP-APVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDSQGFDWKPE 439

Query: 81  LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +    + D+   +  +A         +   + +TG+ GKTT    L  A   +++  A
Sbjct: 440 WQVHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSA 499

Query: 139 CIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----------- 185
            IG+  N     +  T    P  V+     L    L ++R +   V  H           
Sbjct: 500 VIGTLGNGALEDLQATQNTTPGPVELQKM-LATFVLDDVRMVAMEVSSHGLDQGRVNGVA 558

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T I   HL     +E   +AK ++F+  +      +N DD F   L       G
Sbjct: 559 FDVAVLTNITRDHLDYHLTMEAYQAAKRKLFD-WQTLSAAVVNADDPFGLALIEDLRKQG 617

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K + S+G    AD         +    ++V+    + ++  H +G     N L  L  +
Sbjct: 618 -KKVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCL 676

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +    +  A++A+S   P  GR + +      G   L+   Y   P +++ A+  L
Sbjct: 677 LVNEVALPAALQAVSGLVPVAGRMQMF----GGGDLPLVVVDYAHTPDALEKALHTL 729


>gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
 gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
          Length = 498

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 147/371 (39%), Gaps = 28/371 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-L 81
           P+  +  I+ +S+ + P   F AI+G   DGH +I  A+ +GA LV+   D+       +
Sbjct: 25  PEIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYIGDAISRGAILVIYEHDLDEYQDDIM 84

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + V     +LG ++            +I  +TG+ GKTT   ML        +    IG
Sbjct: 85  YVKVKNARHMLGTMSS-RFYGHPSEALSITGVTGTNGKTTITHMLKSIFQKDGRKCGLIG 143

Query: 142 SYNNHIGVPL--TLARMPVD-----------VDFGIFELGM---SHLGEIRFLTHLVRPH 185
           + NN IG  +     R   D           V+ G   L M   SH  ++  +  +   +
Sbjct: 144 TINNQIGDEIIDNAGRTTPDSLEVQEIISEMVEAGCQNLVMEVSSHALDLDRVNGVAFDY 203

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             + + +   HL      E    AKA++F    K   I  N DD + + L  +       
Sbjct: 204 -GIFSNLTQDHLDYHKTFENYFEAKAKLFTYTSKANII--NCDDVWGKKLYDRCAQKKGV 260

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +YS+G +   DF  R  K   E +   +  +    E+     G  M  N +  +    +
Sbjct: 261 AVYSYGLNPECDFYARDMKYSIEGTRYTLVTKDGEEEIFISIPGEVMVYNSMAAIINALL 320

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   +AL+     EGR +  R  L+  F  +ID  Y  +P S++    +L  +  
Sbjct: 321 EGISIEVIKEALASMSGVEGRME--RLDLDTEFDIIID--YAHSPDSLE---RLLKSVKT 373

Query: 366 HGEGRRIAVLG 376
             +G+   V G
Sbjct: 374 MYDGKVYLVFG 384


>gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
 gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
          Length = 474

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 40/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    +A + +  T+  IG   N  G    L +         + + 
Sbjct: 119 IAVAGTHGKTTTTSLTAAIMAEAGLDPTF-VIGGRLNSAGTNARLGQ-------SRYLVA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P  A++T I   H+  + G   ++ +   E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMSAIVTNIDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCV 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     L  + +    + +  +G S++AD +    +Q    +   V + +G+ +EV  +
Sbjct: 229 DDPVVRKLLPRVN----RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLEVSLN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLI 342
             G H   N L  + + +   AD +  I+ L+ F    G G+R+          G  TL+
Sbjct: 285 MPGRHNVLNALAAIAVSADEGADDEAIIRGLNNF---TGVGRRFDVQGEYHFEGGSATLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS----- 397
           D+ Y  +P  + A I  + +  P    RR+A+L         +Q  + D  EVLS     
Sbjct: 342 DD-YGHHPREVAATIDAIREGWPE---RRLAMLFQPHRYTR-TQDLYEDFVEVLSGVDVL 396

Query: 398 ----LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               +Y      + G    AL  +L  R +   + +  D L   + S L DGD++V + +
Sbjct: 397 LMLEVYAAGEDPIPGADARALCRSLRKRGLEPVFVDDPDKLAGLLASQLQDGDLLVTQGA 456

Query: 453 NSCG 456
            + G
Sbjct: 457 GNVG 460


>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
 gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
          Length = 483

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 143/376 (38%), Gaps = 47/376 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR + P   F A++G   DG  +I  A+++GA  +V  TD  A +  LS+PV 
Sbjct: 21  ITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIV--TDCQAVLEDLSVPVL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142
            V +V  +L   A         T++A+TG+ GKT+    +    + +    A IG+    
Sbjct: 79  RVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIGTVGVV 138

Query: 143 --YNNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               N  G      P+ L R+  +     V     E     L + R     VR      T
Sbjct: 139 SPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRL--DGVRLTAGAFT 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKSHALGI 244
            +   H+     +E+   AK  +F+ L       L + D  +       + +A+   L I
Sbjct: 197 NLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRRVLTI 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                F      + Q  + KQC     +E +++ K         G     N L+  G+  
Sbjct: 257 GRKGHFITINRVEHQ--RSKQC-----IECRVENKIYTFDLPLAGDFQVANALVAAGLAI 309

Query: 305 ILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                 D    AL       GR    GK  + A        ID  Y   P +++    VL
Sbjct: 310 ATGLSPDKVFSALETLQGAPGRLEFVGKTEKNAP-----VYID--YAHKPEALE---QVL 359

Query: 361 SQISPHGEGRRIAVLG 376
             + P  +GR I V G
Sbjct: 360 LSVRPFTQGRLIVVFG 375


>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium meliloti 1021]
 gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
 gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
 gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
          Length = 486

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 141/366 (38%), Gaps = 28/366 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR + P + F A+ G   DG  +I  A+ +GA  VV  T   A  G+   PVF
Sbjct: 27  IGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVAGTGTPAEAGA---PVF 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
            + D    L K A +   R   T++A+TG+ GKT+         +    + A IG+    
Sbjct: 84  AISDPRRFLAKAASSFYGRQPETMVAVTGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVV 143

Query: 144 ---NNHIGV-----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
                  G      P++L ++  ++ D G+    M   SH  + R L   V    A  T 
Sbjct: 144 APGRTEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQRRLDG-VELAAAAFTN 202

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H+     +E   ++K  +F  L   G+  + + D  +      +       + + G
Sbjct: 203 LGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAIAAARKAGHDVRTVG 262

Query: 252 KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +N DF  L++ +    +   EV +     E+     G     N L+  G+        
Sbjct: 263 --RNGDFIALKRVEHFRHKQSAEVHVGDDIYEIHVPLAGDFQIANALVAAGLAMSTGITA 320

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A  AL       GR          G    +D ++  +     A  +VL  + P   GR
Sbjct: 321 KAAFSALERLQGASGR-LELVGQTKDGALAYVDYAHKPD-----ALANVLESVRPFTTGR 374

Query: 371 RIAVLG 376
            + V G
Sbjct: 375 VVVVFG 380


>gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4]
 gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella loihica PV-4]
          Length = 488

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 32/368 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------I 83
           +++DSR I     F A+ G   DG D++  A+ +GA   +++TD  A  G +S      I
Sbjct: 22  LTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNGLRI 81

Query: 84  PVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             F +   L AL ++L V  R R K  +I +TG+ GKT+  +++      + K  A +G+
Sbjct: 82  YFFQLQRQLSALASQLYVLGRDRIK--LIGVTGTNGKTSVTQLIAQLSDGLGKPAAVMGT 139

Query: 143 YNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N +             P+T+ R   D D     +  + +S  G ++     V   +AV
Sbjct: 140 LGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFDVAV 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     ++   +AK  +F          +N DD             G+   +
Sbjct: 200 FTNLSRDHLDYHGSMDAYGAAKQRLFR-FSSLSHGLINLDDPVGRQWIQDKRCKGL-VGF 257

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    + A    ++ KQ S+     +       ++    +G     N++  LG + +   
Sbjct: 258 SIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYLSGY 317

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   +  +S   P  GR +R+     +G   ++D  Y   P +++ A+  L     H  
Sbjct: 318 AMAQLLTQVSSLKPVAGRMERF--TTQEGVTLVVD--YAHTPDAIEQALRAL---RGHCR 370

Query: 369 GRRIAVLG 376
           G+   V G
Sbjct: 371 GKLWCVFG 378


>gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
 gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
          Length = 477

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 131/323 (40%), Gaps = 45/323 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F AI G  +DGH FI  A+  GA  +VV  D V  I    I   
Sbjct: 23  ITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANGANTIVVTED-VTEID--DINYI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL +++  V      K  +I +TG+ GKTTT  M++  L  +      IG+  
Sbjct: 80  KVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLDSPCTNIGTNG 139

Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183
             IG      P T         + ++ V+  +D  + E     L +  L  I F      
Sbjct: 140 TFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVECSSHGLYLHRLDGIDF------ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+  ++  H+     +E    AK  +FE  +K      N DD +    KA+     
Sbjct: 194 -DVAVLNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  Y+F     +DF+    +    +   E+    K+++ V +        N +  +  V
Sbjct: 245 FEDAYTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNSVAAIVAV 300

Query: 304 SILTADVDTAIKALSVFHPKEGR 326
           ++L  ++    K+L  F   E R
Sbjct: 301 NLLGYELKDIAKSLESFTGVEAR 323


>gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
          Length = 501

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 164/391 (41%), Gaps = 49/391 (12%)

Query: 18  SIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G+  QG     + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +  
Sbjct: 11  DLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTD-- 68

Query: 74  MVASIGSLSIPVFGVDDVL-----GALNKLAVAARLRSKAT---IIAITGSVGKTTTK-- 123
             A+   ++  V    D            LA  A L   A    ++ +TG+ GKT+    
Sbjct: 69  --AAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASF 126

Query: 124 ----------EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM--- 169
                     E + I  + ++  Y    ++      P+TL R+  + +  G+    M   
Sbjct: 127 CRQIWCELGYEAVNIGTTGVEGAYEAPLAHTTP--EPITLHRVLAECEVAGVTHAAMEAS 184

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226
           SH  E R L   HLV    A  +  +  HL   +  +E  +AKA +F   L + G   +N
Sbjct: 185 SHGLEQRRLDGVHLV---AAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVIN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A G + + + G+   +D  ++  +       +  + +G++ ++  +
Sbjct: 242 IDDPKGPAMAEIARARG-QDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLN 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDES 345
            +G    +N+ +  G+V    +D D     L   H K  RG+    A  + G    +D +
Sbjct: 301 LMGGFQGENVALAAGLVIAAGSDPDRVFDTLR--HMKTVRGRMQLAATRRNGAAVFVDYA 358

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +  +  S     + LS + PH  GR +A++G
Sbjct: 359 HTPDAVS-----TALSALRPHVMGRLVAIIG 384


>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 505

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 149/375 (39%), Gaps = 39/375 (10%)

Query: 23  PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G   ++G+S DSR +AP  AF A+ G   DG  FI  A  +GA + + +  +      
Sbjct: 41  PAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQAV-----E 95

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134
            SIPV  V +    L+  A     R   T++A+TG+ GKT+    T+++   A   +++ 
Sbjct: 96  TSIPVLAVKEPRRFLSIAASRFFGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155

Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
            T   +    N  G      P++L ++  +     V     E     L + R     V+ 
Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELAGEGVTHAAMEASSHGLDQSRL--DGVKL 213

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
             A  T +   H+     +E   +AK  +F+ L K     +  DD +       +   G 
Sbjct: 214 AAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQLLPKGAPAVIFADDPWSAQAIKAAADAGH 273

Query: 244 -IKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            ++T+      +  D+  L++ +    +   E+ + G+  EV     G     N L+  G
Sbjct: 274 DVRTV-----GRKGDYLTLKRVEHFRHKQTAEIHIDGEIFEVDIPLAGDFQVANALVAAG 328

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      +   A+ AL       GR          G    +D  Y   P +++   +VL 
Sbjct: 329 LAMSTGVEPKVAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLG 382

Query: 362 QISPHGEGRRIAVLG 376
            + P   GR + V G
Sbjct: 383 SVRPFTTGRVVVVFG 397


>gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia canadensis str. McKiel]
 gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel]
          Length = 478

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 154/380 (40%), Gaps = 45/380 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L Q  Q H+I         G+S +S++I   E FFA+KG   DG+DFI  A+ KGA LV
Sbjct: 4   NLKQLFQQHNI--------KGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLV 55

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + + +   +I      V  V+D+  AL ++      +    +IA+TG+ GK++    +  
Sbjct: 56  ITDNEKNTAINK----VIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQ 111

Query: 129 ALSSIKKTYACIGSY-------NNHIG-VP-------LTLARM-----PVDVDFGIFELG 168
             S + +  A IG+        +N I  VP       L+  ++      + +++  FE  
Sbjct: 112 LYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEAS 171

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
              L + R   + V  +IA  T+ +  HL      E    AK ++F   L       LN 
Sbjct: 172 SHGLDQTRLGENKV--NIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNS 229

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    E +KA  +   IK I    K    D Q+ +     +   ++     +        
Sbjct: 230 DIEEIEFIKAYLNKHNIKFITVGIK---GDLQITRINSSLKGQNIDFTFNNRKYSFNTPI 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L+            D  I +L    P +GR ++     N   F      Y+
Sbjct: 287 IGSFQASNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQIE---NTNIFV----DYS 339

Query: 348 ANPASMKAAISVLSQISPHG 367
             P +++ A+  L  I   G
Sbjct: 340 HTPDALEKALLELKNIQVLG 359


>gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK405]
 gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK678]
 gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK160]
 gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1]
 gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK330]
 gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1058]
          Length = 459

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + + + A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASHTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis RP62A]
 gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis RP62A]
 gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU028]
 gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 494

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 134/326 (41%), Gaps = 39/326 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H F  + V +G G+VVVN   ++  ++  + +P
Sbjct: 23  VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKGNVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      + T   +TG+ GKT+   M+ +    + K  A +G+
Sbjct: 83  -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH----LGEIRFLTHLVRP 184
               +           P T+A     +  VD +     + +S     LG +R     V  
Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F + L     
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLA---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++    ++++G +  A F  +  K+  +    E      S  V    +G     N++  +
Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAM 309

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326
             V     +++  I A++   P EGR
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGR 335


>gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
          Length = 508

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 169/409 (41%), Gaps = 65/409 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD     L +      IK  +++  KS  ADF +         S+++ +      
Sbjct: 246 GVINLDD-----LYSSDFKNAIKKSFTYSLKSSKADFFV---------SFIDEKTDSTRF 291

Query: 282 EVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
           E  H G+ Y            +N++  L +VS IL  D+   +  L+     +GR     
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--S 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 350 INLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393


>gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS)
 gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 497

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T      G  
Sbjct: 17  IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIF 76

Query: 82  S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                   I  F + + +  L N+       R K  II ITG+ GKTT  +++    + +
Sbjct: 77  KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134

Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
               A +G+            NN    P+ +      V     EL    +     + H V
Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194

Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +    +IA+ T +   HL     +E+  SAK  +F    K   I LN DD +
Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLF-STHKVKKIILNADDQY 245


>gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
 gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
          Length = 491

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 151/384 (39%), Gaps = 57/384 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           V+ ++ +S+ +     FFAIKG   DGH FI  A++ GA  VV++    A   S   P  
Sbjct: 20  VSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYPDV 79

Query: 85  VFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            F + D +    +  V+ R       K  +I +TG+ GKTT   +L   L    K    I
Sbjct: 80  TFVISDNIRK-TQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGII 138

Query: 141 GS--YNNHIGVPLTLARMPVDV--------------DFGIFELGMSHLGEIRFLTHLVRP 184
           G+  Y     +  +    P  +              D+ + E+    + + R    +   
Sbjct: 139 GTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGTVF-- 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHA 241
           H  + T +   HL     +E     K   F+ ++ T   G I  N DD +   +     +
Sbjct: 197 HGGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKS 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + TI S+G+ KNA F++         S   V ++G S    ++GI   +  ++     
Sbjct: 257 C-MNTI-SYGRDKNAQFRV---------SDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFN 305

Query: 302 IVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           I +I  A         D+D    A     P  GR +     + + F  + D  Y   P +
Sbjct: 306 IYNIAAAFSYLLRSGFDIDFLHHATEKLKPIRGRFE----TVEKDFLVVND--YAHTPDA 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++  +  L+QI  +   R I V G
Sbjct: 360 IEKILMSLNQIKKN---RIIIVFG 380


>gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
 gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
          Length = 441

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 148/357 (41%), Gaps = 56/357 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  ++  +    + K          +IGVP  L  +  D D  + EL  
Sbjct: 112 VIAITGSNGKSTVTDLTGV----VAKAAGLKVGVGGNIGVP-ALDLLAQDADLYVLELSS 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     L+       A    ++  H+  + G+E    AK  IF   +      +N DD
Sbjct: 167 FQLETTSSLSL----KAAAFLNLSEDHMDRYEGMEGYRQAKLRIF---DHADACIVNADD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                 KA    +G K +  F  + +AD+ L      +E    E   QG +  +      
Sbjct: 220 ------KATYPDVGDKKLIEFSLNGSADYHL------AELQGQEFLFQGSAPIMPSSDLT 267

Query: 288 -IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLID 343
            +G H   N L+ L ++S +  D+   + AL     K   G  +RC   A NQG    ++
Sbjct: 268 LVGRHNIANALVVLALLSQVDVDLSLGLDAL-----KSYSGLTHRCQVVADNQG-IKWVN 321

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N AS  AA+S LS      +G+   ++G + +  + S+     LA VL+  N+  
Sbjct: 322 DSKATNVASTLAALSGLSL-----QGKLYLLVGGVGKGADFSE-----LAPVLASLNVQL 371

Query: 404 VWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                 G   ++L  +        Y + M+ +  +I   L  GD+V++  S +C  +
Sbjct: 372 CCFGEDGSQFMSLHPS------AKYFDNMEAIVAWINPQLQAGDMVLL--SPACASF 420


>gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 149/377 (39%), Gaps = 43/377 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83
            V+ + +DSR + P   F A+ G   DG +FI  A+++GA  V+     V + G++ I  
Sbjct: 24  LVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEIID 83

Query: 84  --PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 84  DVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 143

Query: 142 SYNN----HIGVPLTLARMPVDVDFGIFELGMSHL--------------GEIRFLTHLVR 183
           +  N    ++          V++   +  L   H               G ++ L+    
Sbjct: 144 TTGNGFLDNLQQAANTTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALSFAA- 202

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK E+F   +    I +N DD         + A  
Sbjct: 203 ---GVFTNLSRDHLDYHGTMEEYANAKLELFTQHQCERAI-INVDDEV-----GHAWATQ 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMT 299
           +    +     N +F+   W       +S + +Q  GK      H   IG   A N+++ 
Sbjct: 254 LSNAIAVSLKPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLHAPLIGEFNATNLMLA 313

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D    ++      P  GR + ++         ++D  Y   P +++ A+  
Sbjct: 314 FATLLSLGKDKQALLETAGQLQPVLGRMELFQT--EDRAKVVVD--YAHTPDALEKALQA 369

Query: 360 LSQISPHGEGRRIAVLG 376
           L     H EG+  A+ G
Sbjct: 370 L---RVHCEGQLWAIFG 383


>gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
 gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
          Length = 460

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 127/294 (43%), Gaps = 32/294 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   RL+     IAI+GS GKTTT  +++  +   K    CI    NH  +  + A   
Sbjct: 101 LAEIMRLKQG---IAISGSHGKTTTTSLISQIMIEAKLNPICIIG-GNHFNLK-SNAYCN 155

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           ++ ++ + E   S    +R     + P  +V+T I   HL  +  +E++  A  +    +
Sbjct: 156 LNSEYMVCEADESDGSFLR-----LSPVFSVVTNIDNDHLDYYGNVEKLRLAFLDFINKV 210

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQ 275
              G  FL +++   + L AKS +   K  YS+G S   DF + K    +E+  ++ +  
Sbjct: 211 PFYGCSFLCFENDVVKDL-AKSVS---KKYYSYGFSNEYDFYVDKSSIKTEEFKTYFKAY 266

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            + K + E     IG H   N L ++ +   L  D DT  KAL  F   EG G+R    L
Sbjct: 267 YKDKFLGEFELPLIGEHNVLNSLASIAVAYHLDIDTDTIKKALKTF---EGVGRRLN-KL 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDM 378
                TL D+ Y  +P  +KA +S L              PH   R   +L D 
Sbjct: 323 YDKEITLFDD-YGHHPTEIKATLSSLRNAYKDRRIIAIFQPHRYSRTQLLLNDF 375


>gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Azoarcus sp. BH72]
 gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 501

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 141/351 (40%), Gaps = 38/351 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP +   D L+A      G+ P G    I+ DSR + P   F A  G   DG  +I  A+
Sbjct: 3   NPAFVLLDQLRAS-----GVRPAG----ITADSRRVGPGAVFAAWPGHVTDGRRYIASAI 53

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGK 119
           ++GA  V+         G L +P F V  +      LA  +  R  ++  +  +TG+ GK
Sbjct: 54  ERGAAAVLWEEGDGFHPGELPVPGFAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGS----YNNHIGVPL-----------TLARMPVDVDFGI 164
           TT  + L  AL  +      +G+    + + +   L           TLAR+ +      
Sbjct: 114 TTVTQWLARALGELGSRCGIVGTLGSGFPDQLSASLNTTPDALELHATLARL-LGEGAAA 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S +G  +   + V   +AV T +   HL     ++  A AKA +F  L       
Sbjct: 173 AAMEVSSIGLDQGRVNGVEFDVAVFTNLTRDHLDYHRTMDAYAEAKARLF-ALPGISRAV 231

Query: 225 LNYDDSFFELLKAKS-------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N DD+ F L +A+          +G   + S   +      L   +  +  S ++  L 
Sbjct: 232 INLDDA-FGLTQARRLVAAGQVDVIGYTCVASNADAVPGARVLVADRLQASPSGLQFSLH 290

Query: 278 --GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             G+  ++    +      N+L  +G + +    V+ A+  +   +P EGR
Sbjct: 291 WAGRQSDLQVRMVAPFNVSNLLAVIGALVMRGVAVEEALAVVGRLNPPEGR 341


>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 494

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 151/385 (39%), Gaps = 63/385 (16%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G++ DSR + P   FFA  G   DG +F   A+ +GA  V+          SL+ 
Sbjct: 22  QTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALARGAVAVISE--------SLAP 73

Query: 84  PVFGVD--DVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           P        V    + LA+AAR        +  +  ITG+ GKTTT  +    L +    
Sbjct: 74  PDLAARWIQVEHGRHALALAARTFFGRPDERLGLTGITGTNGKTTTAYLTDSVLRAAGGV 133

Query: 137 YACIGSYNNHIG--VPLTLARMPVDVDF-----GIFELGMSH-----------LGEIRFL 178
            A IG+   H+   V   +   P  +D       +   G +H           LG +   
Sbjct: 134 TAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVTMEVSSHALALGRV--- 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF--LNYDDSFFELLK 236
            H +  H AV T +   HL     +E   +AK  +FEG       F  LN DD +   L+
Sbjct: 191 -HGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAVLNTDDEYSRRLR 249

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              HA   +  Y  G +  AD + R      +    ++Q + +   +    IG     N+
Sbjct: 250 L--HARTERLWY--GMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESPLIGKINVYNI 305

Query: 297 L------MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           L       + G+   + A    ++KA+         G+  R    Q F  ++D ++  + 
Sbjct: 306 LAACATGFSYGLAPEVVARGIASLKAVP--------GRFERVDEGQPFVVVVDYAHTDD- 356

Query: 351 ASMKAAISVLSQISPHGEGRRIAVL 375
            +++  I+V   ++P    RR+  L
Sbjct: 357 -ALRNVIAVARGLNP----RRVITL 376


>gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
 gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
          Length = 501

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 148/378 (39%), Gaps = 48/378 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   +AF A  G   DG  ++  A+++GA  ++V  D     G  +  + G  
Sbjct: 26  LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALLVEAD-----GLQAFDLSG-- 78

Query: 90  DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136
           D + AL  L  A  L           +  ++A+TG+ GKTTT   L  ALS +    +  
Sbjct: 79  DSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTG 138

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+    +GVP  L                 R   D       +  S +G +     
Sbjct: 139 CALVGTLG--VGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLD 196

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK 238
             +  +A+ T     HL     ++    AKA++F+  GL       +N DD+    L A+
Sbjct: 197 GSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAA---VVNIDDAHGARLWAR 253

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +  ++S      A  Q +      E     V   G S+ +    +G +   N+L 
Sbjct: 254 LQGRAMD-VWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLG 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L   ++ A++A +   P  GR ++    + +    L+   Y   P +++ A+ 
Sbjct: 313 VLATLRCLGLTLEQAVQACADLEPVPGRMQQ----IVKPGQPLVAVDYAHTPDALEKALR 368

Query: 359 VLSQISPHGEGRRIAVLG 376
            L   +   +G+   V G
Sbjct: 369 ALQPAARQRQGKLWCVFG 386


>gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 498

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T      G  
Sbjct: 17  IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIF 76

Query: 82  S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                   I  F + + +  L N+       R K  II ITG+ GKTT  +++    + +
Sbjct: 77  KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134

Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
               A +G+            NN    P+ +      V     EL    +     + H V
Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194

Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +    +IA+ T +   HL     +E+  SAK  +F    K   I LN DD +
Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLF-STHKVKKIILNADDQY 245


>gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
          Length = 474

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 154/371 (41%), Gaps = 43/371 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S +S++I   +AFFAIK    +G+DFI  A++KGA LV+ +        + +  V 
Sbjct: 14  VKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKK-----NTTNKVI 64

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142
            V+D+   L++       +   T+IA+TG+ GK++    +    S I +  A IG+    
Sbjct: 65  FVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKAASIGTIGVE 124

Query: 143 ------YNNHIGVPLTLARMPVD----------VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                 +N  IG   T   +             +D+  FE     L + R     ++ ++
Sbjct: 125 VFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRLGD--LKVNV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T+ +  HL      E    AK ++F + L K G   LN D    E +K     L   
Sbjct: 183 ACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSD---IEEIKFIKDYLDKH 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I       N + ++ K     +   +      K+ +     IG   A N+L+    V  
Sbjct: 240 KIKYLCVGANGNCKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAGLSVYY 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            + D    I AL+     +GR +R    +N+   T I   Y   P +++ A++ L  I  
Sbjct: 300 TSFDFSKVINALTKVKAVKGRMER----VNR---TNIFIDYAHTPDALEKALTELKNIKA 352

Query: 366 HGEGRRIAVLG 376
            G G+   + G
Sbjct: 353 KG-GKLSVIFG 362


>gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella bacilliformis KC583]
 gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella
           bacilliformis KC583]
          Length = 483

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 133/324 (41%), Gaps = 37/324 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS +SR I P   F A++G   DG  +I  A+++GA +VV + D VA   +LS+PV 
Sbjct: 21  ITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE--NLSVPVL 78

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V DV    N    AAR  S    T++A+TG+ GKT+    +      +    A IG+  
Sbjct: 79  QVSDVRH--NLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIGTVG 136

Query: 144 -----NNHIGV-----PLTLARMPVDV-DFGI----FELGMSHLGEIRFLTHLVRPHIAV 188
                 N  G      P+ L R+  ++ D G+     E     L + R     V    A 
Sbjct: 137 VVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRL--DGVNLAAAA 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE-----LLKAKSHAL 242
            T +   H+   + +++   AK  +F+  L       +  DD + +     + +A   AL
Sbjct: 195 FTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRAL 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I     F K      + R+ KQ     ++E +++          +G+    N LM  G+
Sbjct: 255 TIGRKGQFIKINR--IEHRRSKQ-----YVECRIENDVYTFDLPLVGHFQVTNALMAAGL 307

Query: 303 VSILTADVDTAIKALSVFHPKEGR 326
                +  D    +L       GR
Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGR 331


>gi|332366089|gb|EGJ43845.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1059]
          Length = 459

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +E  A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 498

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T      G  
Sbjct: 17  IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIF 76

Query: 82  S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                   I  F + + +  L N+       R K  II ITG+ GKTT  +++    + +
Sbjct: 77  KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134

Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
               A +G+            NN    P+ +      V     EL    +     + H V
Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194

Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +    +IA+ T +   HL     +E+  SAK  +F    K   I LN DD +
Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLF-STHKVKKIILNADDQY 245


>gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 508

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 168/411 (40%), Gaps = 69/411 (16%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           +V + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  IVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKT 220
            E   SH   L   R +   V    AV T I   HL     I+   + K  +F  + +  
Sbjct: 187 LE-STSHGLDLETARLID--VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDA 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G   +N DD     L +      +K  +++  KS  ADF +         S+++ +    
Sbjct: 244 GFGVINLDD-----LYSSDFKNAVKKSFTYSLKSSKADFFV---------SFIDEKTDST 289

Query: 280 SMEVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKR 329
             E  H G+ Y            +N++  L +VS IL  D+   +  L+     +GR   
Sbjct: 290 RFEFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDS 349

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 350 IN--LGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 462

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 141/362 (38%), Gaps = 58/362 (16%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           K  G+   N  MV     L++P++   ++L   N+          A +I ITGS GKTTT
Sbjct: 81  KNPGIPYSNP-MVQRAQELNLPIYTDIELLAWFNQ----------AEVIGITGSNGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             +L   L   K+         N IG+P LT ++     D  + EL    L  I      
Sbjct: 130 TSLLGEILQGAKELTGKTEVAGN-IGIPALTASQGLSSQDRLVLELSSFQLMGIETF--- 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIA I  + P HL     IE   +AK  I +       + LNYD       KAK  +
Sbjct: 186 -RPHIAAIIDLYPTHLDYHGSIENYLAAKWRITKNQGPDDYLLLNYDQEIL-WQKAKESS 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEVVHHGIGYHMAQNMLM 298
             I  I     S  ++ +   W    E + M   E  L+ + + +     G H  QN L+
Sbjct: 244 AQIIPI-----SIESELEKGAWYNEKEGTLMWGSETVLKREDLFLP----GKHNVQNALV 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES--YNANPAS-MKA 355
            L I  +L     +   A S FH     G ++R      F   I E   YN + A+  +A
Sbjct: 295 ALAIAKLLGVSNASIQTACSQFH-----GVKHRIQ----FVDQIKERRFYNDSKATNNEA 345

Query: 356 AISVLSQISP----------HGEG-----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I+ L                G G     + +  +  +  MGE    F IDLA    +  
Sbjct: 346 SITALRSFKEPLVWIAGGLDRGNGVKELLKELGQVHALVAMGETQDKF-IDLANKAGISQ 404

Query: 401 IS 402
           IS
Sbjct: 405 IS 406


>gi|307637428|gb|ADN79878.1| UDP-N-acetyl muramoyl alanyl-D-glutamyl-2,6-di amino
           pimelate--D-alanyl-D-alanine ligase [Helicobacter pylori
           908]
 gi|325996018|gb|ADZ51423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2018]
 gi|325997613|gb|ADZ49821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2017]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
 gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
          Length = 508

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 167/408 (40%), Gaps = 63/408 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +V + D+    +++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  IVCSRDVDFYSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 125 MLTIAL--------------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            + + L                    S IK  Y      +  I   L+   +  +  + I
Sbjct: 128 HIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-NMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +    K   +A+     YS  KS  ADF +         S+++ +      E
Sbjct: 246 GVINLDDFYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDFTRFE 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVS----------ILTADVDTAIKALSVFHPKEGRGKRYRC 332
             H G+ Y    N+L +  + +          IL +D+   +  L      +GR      
Sbjct: 293 FYHKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMD--SI 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393


>gi|70726183|ref|YP_253097.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus haemolyticus
           JCSC1435]
 gi|109892743|sp|Q4L784|MURC_STAHJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68446907|dbj|BAE04491.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 128/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPAS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++ASA   +   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKDIDDVASAFQSMAHNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD     LKA         IY +G +KN D      +   + +  +V + G+  + 
Sbjct: 201 IAWGDDDHLRQLKADV------PIYYYGLNKNDDIYADNIQITDKGTQFDVYVNGEYYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H  QN L  + I  +   DV+   +AL  F    G  KR     N     L+
Sbjct: 255 FLSPQYGDHNIQNALAVIAISYLEKMDVNNIKEALETF----GGVKRRFNETNVANQVLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           +++   PH   R  A L +      LS++ H+ L
Sbjct: 311 DD-YAHHPREISATIETARKKYPNKDIVAVFQPHTFSRTQAFLDEFAT--SLSKADHVYL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 483

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 144/368 (39%), Gaps = 32/368 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAKVIVCEKDLEELSYYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  +A            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P  L L ++  D     VD+ + E+    L   R   + V    A+
Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR--VYGVEFKEAI 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K  Y
Sbjct: 200 FTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKITY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G  KN D +       S     +   + +   +  +  G +   N L ++G   +   
Sbjct: 255 --GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLEGI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            + T  +AL+      GR +      N G+  ++D  Y   P  ++   ++L+      +
Sbjct: 313 PLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREFTK 367

Query: 369 GRRIAVLG 376
           GR I+V G
Sbjct: 368 GRLISVYG 375


>gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 485

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 156/371 (42%), Gaps = 39/371 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G +ID R +AP   F A  G   +G DFI  A+  GA  VV   + V   G++ IP  
Sbjct: 24  VTGFAIDHRKVAPGTVFGAFPGARVNGEDFIPAAIAAGAVAVVARPEAVVE-GAVHIPDA 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
              +      ++A         T++A+TG+ GKT+T EM            A IG+    
Sbjct: 83  ---EPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMAGHRSASIGTLGVT 139

Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
             +  I   +T    P  V F     G+   G++HL       G  ++ +          
Sbjct: 140 TADESISTGMT---TPDIVTFLANVSGLAREGITHLAYEASSHGLDQYRSEGPVVAAGAF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKT 246
           T ++  HL     +E   +AK  +F E + + G   +  DD + +  +  A+  AL + T
Sbjct: 197 TNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDHARRRALRVLT 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G++     +L   K       +++  +G++ ++    IG + A N L++ G+V   
Sbjct: 257 VGERGET----IRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSAGLVLAT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISP 365
             D      AL    P   RG+  R A+ + G    +D  Y   P ++ AA + L    P
Sbjct: 313 GGDPTQTFDALGRLQPV--RGRLERAAITRTGAPVYVD--YAHTPDAITAACAAL---RP 365

Query: 366 HGEGRRIAVLG 376
           H EGR I V G
Sbjct: 366 HVEGRLIVVFG 376


>gi|317178903|dbj|BAJ56691.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F30]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A +K+A    L+    +IAITGS GKT+TK  L   L +    +A   S N  +G+   +
Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHANPKSVNTLLGLANDI 213

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   D  +  I E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE
Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273

Query: 213 IFEG--LEK 219
           + +   LEK
Sbjct: 274 LLDSKRLEK 282


>gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis]
          Length = 483

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 133/324 (41%), Gaps = 37/324 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS +SR I P   F A++G   DG  +I  A+++GA +VV + D VA   +LS+PV 
Sbjct: 21  ITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE--NLSVPVL 78

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V DV    N    AAR  S    T++A+TG+ GKT+    +      +    A IG+  
Sbjct: 79  QVSDVRH--NLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIGTVG 136

Query: 144 -----NNHIGV-----PLTLARMPVDV-DFGI----FELGMSHLGEIRFLTHLVRPHIAV 188
                 N  G      P+ L R+  ++ D G+     E     L + R     +    A 
Sbjct: 137 VVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRL--DGINLAAAA 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE-----LLKAKSHAL 242
            T +   H+   + +++   AK  +F+  L       +  DD + +     + +A   AL
Sbjct: 195 FTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRAL 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I     F K      + R+ KQ     ++E +++          +G+    N LM  G+
Sbjct: 255 TIGRKGQFIKINR--IEHRRSKQ-----YVECRIENDVYTFDLPLVGHFQVTNALMAAGL 307

Query: 303 VSILTADVDTAIKALSVFHPKEGR 326
                +  D    +L       GR
Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGR 331


>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
 gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
          Length = 483

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 145/367 (39%), Gaps = 32/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN +  DSR I   + F AI+G + DGH FI  A++ GA ++V + D   +     I V 
Sbjct: 23  VNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENGAKVIVCSKDTEINESCTYIKVE 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L A+          +K  +I ITG+ GKTT+  M+   L         IG+  N 
Sbjct: 83  NTRKAL-AIIASNFYGNPSNKIKLIGITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANF 141

Query: 147 IG---------VP--LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           IG          P  L L  M       ++++ I E+    L   R   + +     V T
Sbjct: 142 IGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIMEVSSHSLSLDR--VYGLEFSQGVFT 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E    AK  +F   + +    +N DDS+ E +        +K  YS 
Sbjct: 200 NLTQDHLDFHKTFENYYEAKLSMFNNAKNS---IINIDDSYGERMLKDIPNTNLKVTYS- 255

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              + AD         +  +  ++  +G ++ +     G +   N L + G        +
Sbjct: 256 -TERQADLVANNIVNHARGAEFDLIYKGTTIHINLSIPGIYNVYNALCSAGACLEEEISI 314

Query: 311 DTAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + L +V  P  GR +      N GF  ++D  Y   P  ++   ++L+      +G
Sbjct: 315 EKVKEGLENVVVP--GRCENVTKKYNLGFDVIVD--YAHTPDGLE---NILNTAKDFTKG 367

Query: 370 RRIAVLG 376
           R I+V G
Sbjct: 368 RLISVFG 374


>gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 477

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 34/357 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  F ++L+ I   S     +  +  ++ +S+ +    AF AIKG   DGH +I  A++ 
Sbjct: 1   MLKFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA L++   D+    G   I    V+D   AL +++  ++     K TI+++TGS GKTT
Sbjct: 61  GASLIIHTEDIAYKEG---ISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGS---------YNNHIGVPL-----TLARMPVDVDFGIFEL 167
           T  ++   L  I    A IG+         Y      P+      L  + +D +     L
Sbjct: 118 TSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLSL 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +   + +     V T ++  HL     ++    AK  +F+  + T     N 
Sbjct: 178 ESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQAKHT---VANI 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +      K+  L   TI     ++NAD++     +   +   EV    K +E + + 
Sbjct: 235 DDPY----GKKAKELYPNTITYGINNENADYRAENVVKKDGKVSYEV----KGVEFILNT 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLID 343
           I  +   N L    +V  + A ++    A+  F+   G   R+    N  G   +ID
Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFN---GVASRFEYMENNLGLNIIID 340


>gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
          Length = 508

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 168/409 (41%), Gaps = 65/409 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD     L +      IK  +++  KS  ADF +         S+++ +      
Sbjct: 246 GVINLDD-----LYSSDFKNAIKKSFTYSLKSSKADFFV---------SFIDEKTDSTRF 291

Query: 282 EVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
           E  H G+ Y            +N++  L +VS IL  D+   +  L      +GR     
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD--S 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 350 INLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393


>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 500

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 148/367 (40%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++     AF  IKG   DGH++I  A+Q GA LVVV+     S     I   
Sbjct: 38  ITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGARLVVVDEFFDTSKIEGKIDYI 97

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++    A       +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 98  KTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTTFMIKSILEANGQKVGLIGTIK 157

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           N IG     A+   P   D           G+  + M   SH  E+ F  +     + V 
Sbjct: 158 NMIGSKEIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEVSSHSLEL-FRVYACDFDVGVF 216

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   SAK ++F G+ K   +  N DDS+      K          +
Sbjct: 217 TNLTQDHLDFHGTMENYFSAKLKLF-GMSKKRVV--NADDSW-----GKRIIEMYPDCIT 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  +A+   +  K    ++  ++    K   ++ +  G     N L       +L  +
Sbjct: 269 YAKDSDANVCAQNIKLFVNKNQFDLYYNNKKENILLNIPGLFSIYNSLAAAACCILLGIE 328

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +DT  K L       GR +      NQ F  +ID  Y   P  +   ++++  ++   +G
Sbjct: 329 LDTIKKGLEELKAVPGRFEIVES--NQKFTVVID--YAHTPDGL---LNLMKTVNEVADG 381

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 382 RKVLLFG 388


>gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
 gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
          Length = 476

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 149/373 (39%), Gaps = 44/373 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F AI G   +GHDFI  A+ +GA LV++   +   I      V 
Sbjct: 12  IKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGA-LVIICEKLPNDI------VN 64

Query: 87  GVDDVLGALNKLAVA-------ARLRSKATIIAITGSVGKTT---------TKEMLTIAL 130
           GV  V  A +K A+A            K  ++ +TG+ GKTT         TK    + L
Sbjct: 65  GVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAGFKVGL 124

Query: 131 SSIKKTYACIGSYNNHIGVP--LT----LARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
            S  K       Y+     P  LT    LA M  + V++   E+    + + R  T LV 
Sbjct: 125 LSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHR-TTGLVF 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               + T ++  HL   S   E    K   F+ L  +     N DD   E++   + A  
Sbjct: 184 AG-GIFTNLSHDHLDYHSSFAEYRDVKKRFFDELPASAFALTNVDDKNGEVMLQNTKA-- 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               Y++G    AD++     Q  E  +  + L+    EV    IG   A N+L      
Sbjct: 241 --KQYTYGLKNYADYK----AQILENQFTGLLLKINDQEVWSRLIGSFNAYNILAIYAAA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +    +K +S  H   GR  +Y  +  +    ++D  Y   P ++K  +  ++ I
Sbjct: 295 ELLGLETLENLKFISELHSVNGRF-QYFISPEEKITAIVD--YAHTPDALKNVLDTINAI 351

Query: 364 SPHGEGRRIAVLG 376
               E   I V+G
Sbjct: 352 RTKNE-ELITVVG 363


>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 487

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 142/342 (41%), Gaps = 31/342 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L++ IQ      + +  V  ++ DSR + P   F AIKG   DGHD+   A  +GA  +
Sbjct: 5   ELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQGAVAI 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V        +  ++IPV  V     A+ +LA         K  +I ITG+ GKTTT  ++
Sbjct: 65  VSE-----RLLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKTTTTTIV 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L+ + +    IG+    IG  +  +R   P   +   F   M   G +  +   V  
Sbjct: 120 RDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEG-VEDVIMEVSS 178

Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAK----AEIFEGLEKTGTIFLNY 227
           H             +A  T +   HL      E  A AK    A++ + L       LN 
Sbjct: 179 HGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKVAVLNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    L +  + A     + ++G  + AD Q +   Q  +++   +  Q +++E+    
Sbjct: 239 DDEISHLFEMMTGA----RVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAVELTVQF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           IG     N+L+  GI+  +   +     A++   P +GR +R
Sbjct: 295 IGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQR 336


>gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
 gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L S+A I AITGS GKTTT  M+   L+   ++    G    +IG P +   + VD  
Sbjct: 106 AYLISEAPIFAITGSNGKTTTTTMIADVLNHAGQSALLSG----NIGFPAS--EVAVDAK 159

Query: 161 --DFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             D  I EL    L G  +F     RPHIAVIT + P H+      EE  +AK  I   +
Sbjct: 160 ENDRLIMELSSFQLMGVDQF-----RPHIAVITNLMPTHIDYHGSFEEYVNAKWNIQNNM 214

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                + LN D      L  K+ A    TI  F   K  D        C +    ++  +
Sbjct: 215 SDKDFLILNGDQEISYDLANKTKA----TILYFSSQKEVD-----GAYCLDG---KLYFE 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G+  M+    G+ G H  +N L T+ +  +   D D+  + L+ F
Sbjct: 263 GEYIMDADQIGVPGLHNVENALATIAVAKLANVDNDSIKETLASF 307


>gi|152992426|ref|YP_001358147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
 gi|151424287|dbj|BAF71790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
          Length = 485

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 37/287 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167
           T++ IT S GKT+ K  +   L +  +TYA   S N   GV   +   +P D +  + E+
Sbjct: 154 TVVGITASYGKTSIKNYIEHLLKAKYRTYATPRSVNTLGGVMKDINDDLPEDTEVYVVEM 213

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G    G+I  +T  V P   V+  I PAH+  F  +E I + K EI +            
Sbjct: 214 GARGEGDIAEITTFVNPQYVVVGKIGPAHIEYFKTMENIRNTKMEILQS----------- 262

Query: 228 DDSFFELLKAKSHALGI----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 L +A  H   +    K I+ FG  +N D  ++      E    +++    +   
Sbjct: 263 ----HRLKEAWIHESAMVKPEKNIHIFGTGENLD--MKTGLPAPEYLIKDIEATLDATSF 316

Query: 284 VHHGIGYHM-------AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              G+ Y         A N+   + +   L    +   + LS     + R +R    ++ 
Sbjct: 317 TLDGVRYSASILGAFNAMNLAAAVLVAKKLGLSDEEIQQGLSTLKAVDHRLQR----IDA 372

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           G   ++D+S+N N   M A+  + S  +    GR++ +   + E+ +
Sbjct: 373 GGKVILDDSFNGNIDGMMASFDLASTYA----GRKVVITPGLVEVDD 415


>gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
 gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
          Length = 486

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 137/362 (37%), Gaps = 38/362 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85
           ++ +  DSR ++    F AIKG   DGHDF+    + GA   +V T   V + G   I V
Sbjct: 24  ISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAKAAIVETLPEVIAEGVTYIKV 83

Query: 86  FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 LG      VA+       SK  ++ +TG+ GKTT   +L      +      + 
Sbjct: 84  ANSATALG-----VVASNFYHNPSSKLKLVGVTGTNGKTTVCTLLYKLFKKLGYNVGLVS 138

Query: 142 SYNNHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI-------- 186
           +  N+I    VP T    P  +        M   G E  F+   +H V  H         
Sbjct: 139 TVENYINDLVVPAT-HTTPDQIALNQLLNRMVDAGCEYCFMEVSSHSVVQHRIDGLEFAG 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T I   HL      +    AK   F+ L        N DD    ++   + A   K 
Sbjct: 198 GVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSKAFALTNVDDRNGNVMLQNTRAH--KK 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y+      ADF+ +      E  +  + L    MEV    +G   A N+L   G   +L
Sbjct: 256 TYALNAV--ADFKAK----IIENLFSGLHLDIDGMEVYFRLVGSFNAYNLLAVYGTALLL 309

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    +  LS+    EGR   Y  A N+    ++D  Y   P +++  +S +  IS  
Sbjct: 310 EQDRTKVLTVLSMLTGAEGRFD-YIIAPNK-VIGIVD--YAHTPDALRNILSTIENISSG 365

Query: 367 GE 368
            E
Sbjct: 366 TE 367


>gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Delftia acidovorans SPH-1]
 gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans
           SPH-1]
          Length = 509

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 146/382 (38%), Gaps = 52/382 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P +AF A  G   DG   +  A+++GA   +V    V + G      F  +
Sbjct: 30  LQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEAQGVEAFG------FSGE 83

Query: 90  DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSIK----KT 136
            +  AL  L  A  L          ++  ++A+TG+ GKTTT   L  AL+ +K      
Sbjct: 84  HI-AALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTTTAWWLAHALAQVKLQERSG 142

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+    +G+P  +                 R   D       +  S +G +     
Sbjct: 143 CALVGTLG--VGIPPAMESTGMTTPDPVRLQRAFREYADAGLAACAIEASSIGIVEHRLD 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS----FFEL 234
             R  +A+ T     HL     ++    AKA +F+  GL+      +N DD+     +  
Sbjct: 201 GTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFDWPGLQAA---VVNVDDAHGARLWAT 257

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+++     +  ++S      A  Q +     +E     V   G S+ +    +G +   
Sbjct: 258 LQSRKQPAALD-VWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRMHTRMVGQYNVS 316

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  L  +  L   +D A+ A     P  GR ++    + Q    L+   Y   P ++ 
Sbjct: 317 NLLGVLAALRCLGLTLDQAVAACVHLEPVPGRMQQ----IVQPGQPLVAVDYAHTPDALD 372

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
            A+  L   +    GR   V G
Sbjct: 373 KALRALRPAAEQRRGRLWCVFG 394


>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
 gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
          Length = 454

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 122/304 (40%), Gaps = 47/304 (15%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V  + D V  + S  IP+ G  +V  A N         SK  I AITG+ GKT+T  ++ 
Sbjct: 79  VPTDLDYVKELKSAEIPIIG--EVELAYN--------FSKGKIAAITGTNGKTSTTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             + +  K+   +G    +IGVP T + +   +    + E+    L  I       RP +
Sbjct: 129 EIMKTYYKSVFVVG----NIGVPYTQMVKNTENDSVTVAEMSSFQLETIETF----RPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +E    AK  I +   K  T  LNY+DS+   +  +  A    T
Sbjct: 181 SAILNITPDHLNRHHTMEAYIEAKVNITKNQTKEDTCILNYEDSYLRTVSGRIPA----T 236

Query: 247 IYSFGKSKNADFQL----------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           I  F   +  +  L             K+C      E+Q+           IG H  +N+
Sbjct: 237 ILWFSSVRELERGLFLRENHIIYRDDEKECVVCDVNELQI-----------IGKHNYENV 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  +GI   L   +D   +A++ F   E R +         ++   ++S   NP +   A
Sbjct: 286 MAAVGIAIALKVPMDFIREAVTKFRGVEHRIEYVTTKRGVKYY---NDSKGTNPDASIQA 342

Query: 357 ISVL 360
           I  +
Sbjct: 343 IKAM 346


>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
 gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
          Length = 507

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 38/244 (15%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  + G++ DSR  AP   F A+ G H DG  ++  A Q GA +V +   + ++I  L I
Sbjct: 26  QDTILGLAYDSRKAAPGYLFIAVPGVHTDGRRYVADAAQHGA-VVALGAPLPSAI-DLPI 83

Query: 84  PVFGVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           P   V+DV  AL  LA A     AR   +   I +TG+ GKTTT  +++    +  +   
Sbjct: 84  PYIEVEDVRTALADLACAFYGFPAR---ELCTIGVTGTDGKTTTSNIISTLFDAAGRRTG 140

Query: 139 CIGSYNNHIG--------VPLTLARMPVDVDF--GIFELGMSHLGEIRFLTH---LVRPH 185
            + + N  +            TL  + +  +F   + E+  +H   I   +H   L R  
Sbjct: 141 MMTTANFKLNGQEWANATRQSTLEALEIQ-EFLRKMVEMQATH-AVIESTSHGLELQRVR 198

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--------TGTIFLNYDDSFF 232
                + V+T I   HL     ++    AKA +FE L+              LN DDS +
Sbjct: 199 GCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDPEQDKGQGYRKVAILNKDDSSY 258

Query: 233 ELLK 236
           E+LK
Sbjct: 259 EVLK 262


>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CFN 42]
 gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CFN 42]
          Length = 506

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 154/372 (41%), Gaps = 32/372 (8%)

Query: 23  PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G   ++G+S DSR++ P  AF A+ G   DG  FI  A  +GA + + +  + A    
Sbjct: 41  PAGLLDISGLSSDSRNVEPGNAFVAVTGTKADGAGFIADAAGRGAAVAIASQPVDA---- 96

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134
            +IPV  V +    L+  A     R   T++A+TG+ GKT+    T+++   A   +++ 
Sbjct: 97  -AIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155

Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRP 184
            T   +    N  G      P++L ++  ++ D G+    M   SH L + R     V+ 
Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKL 213

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A  T +   H+     +E   +AK  +F+ L   G   + + D  +     ++ A   
Sbjct: 214 SAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSPQAVQAAADAG 273

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + + G+ K     L++ +    +   E+ +  +  EV     G     N L+  G+  
Sbjct: 274 HDVRTVGR-KGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAM 332

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +   A+ AL       GR          G    +D  Y   P +++   +VL+ + 
Sbjct: 333 STGVEPKAAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLNSVR 386

Query: 365 PHGEGRRIAVLG 376
           P   GR + V G
Sbjct: 387 PFTTGRVVVVFG 398


>gi|164688449|ref|ZP_02212477.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
 gi|164602862|gb|EDQ96327.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 14/256 (5%)

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           EI    ++  T+ +N DD     LK K     +KT   FG  K+       ++     + 
Sbjct: 2   EITTNFDENSTLIVNGDDDMLATLKGKDLKYNLKT---FGFEKDNTIYCVDFEMNDNDTI 58

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V +  K  +     +G H   N +  + +   L   +D     L      + R     
Sbjct: 59  FNVMIDNKIEKFYIPTVGEHNIYNAMAAILVGKTLNLTLDEIRNGLETLEITKSR----M 114

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +    +T+ID  YNA+  SM+AA+ VL++       RR+A+LGD+ EMG  ++  H  
Sbjct: 115 DVIKNDNYTVIDSVYNASVDSMRAALKVLNRYKT----RRVAILGDIFEMGSFAEEGHKQ 170

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVV 448
           + +  S      + +        K+AL  ++   +VH+  T +      ++ L  GD ++
Sbjct: 171 VGKDASENADVIIAIGKDAEFISKEALENNMNKDNVHHFATKEEAMENFKNILQKGDTIL 230

Query: 449 VKSSNSCGFYRLINLL 464
           VK+S       ++  L
Sbjct: 231 VKASRGMHLEEVVEFL 246


>gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
 gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
          Length = 495

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 153/379 (40%), Gaps = 47/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           + G+++DSR + P   F A+ G    G +FI +A++  AG ++ +          + +  
Sbjct: 19  ITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTDAKGAEIAADELAASD 78

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KT 136
             V    D   AL + A         T+IA+TG+ GKT+           +        T
Sbjct: 79  AAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCRQIWEELDLPGVNLGT 138

Query: 137 YACIGSYNNHIG----VPLTLAR-MPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
               G++N+ +      P+TL R M      GI  + M   SH  + R L  ++      
Sbjct: 139 TGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGLDQRRLDGVI------ 192

Query: 189 ITTIAPAHLSNFS--------GIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
              +A A  SNFS          E    AK  +F+  L + G   +N DD   + + A  
Sbjct: 193 ---LAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGKEVAAIC 249

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNML 297
            A G + I   G  ++ D +LR   Q  + +  ++  + QG++ +     IG   A+N+L
Sbjct: 250 TARGQEVI---GVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAENVL 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+V    AD D     L       GR          G    +D  Y   P +++ A 
Sbjct: 307 LASGLVIAAGADPDEVFDTLQYLTTVRGR-MELAATRQSGAAVFVD--YAHTPDAVETA- 362

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L  + PH  GR I ++G
Sbjct: 363 --LRAMRPHVMGRIIVIVG 379


>gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
 gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
          Length = 496

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 133/327 (40%), Gaps = 54/327 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------------------N 71
           +++DSR +   + F A+KG   DG  FI +A+++GA +++                   N
Sbjct: 24  MTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFN 83

Query: 72  TDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            D  A    +S+P     + ++ GAL           K T+  ITG+ GKTTT ++L   
Sbjct: 84  LDRTACCKVVSVPRLPKLLSEIAGALYH-----NPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 130 LSSIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF-ELG-------MSHLGEI 175
            + +    A +G+  N +       V  T + + +  +   F ELG       +S  G  
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLA 198

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FEL 234
           +F    +   +A+ T ++  HL   + +EE A AK  +F  L     + +N DD    E 
Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQV-INADDEIGREW 257

Query: 235 LKAKSHALGIKTI------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           L    +A+ + T       + F K+    F L+      E SW   +L  +        I
Sbjct: 258 LTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRL-------I 310

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIK 315
           G     N+L     +  L  D+   +K
Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQELVK 337


>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
 gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
          Length = 483

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 140/372 (37%), Gaps = 39/372 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR + P   F A++G   DG  +I  A+++GA  +V  TD  A +  L +P+ 
Sbjct: 21  ITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIV--TDCHAVLEDLPVPIL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
            V +V  +L   A         T++A+TG+ GKT+    +    + +    A IG+    
Sbjct: 79  RVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASIGTVGVV 138

Query: 144 ---NNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               N  G      P+ L R+  +     V     E     L + R     VR      T
Sbjct: 139 SPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRL--DGVRLTAGAFT 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKSHALGI 244
            +   H+   +G+E+   AK ++F+ L       L + D  +       + +A+   L I
Sbjct: 197 NLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVVTQARRRVLTI 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                F      + Q  + KQC     +E +++           G     N LM  G+  
Sbjct: 257 GRKGQFITINRVEHQ--RSKQC-----IECRVENNIYTFDLPLAGDFQVANALMAAGLAI 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      AL       GR +      N     +    Y   P +++    VL  + 
Sbjct: 310 ATGVSPRKVFSALETLQGAPGRLEFVGKTENNAPVYI---DYAHKPEALE---QVLLSVR 363

Query: 365 PHGEGRRIAVLG 376
           P  +GR I V G
Sbjct: 364 PFTQGRLIVVFG 375


>gi|149194595|ref|ZP_01871691.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
 gi|149135339|gb|EDM23819.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
          Length = 469

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 37/291 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           II ITGS GKT+ K  +   L    K Y    S N   G+ L +   +P D +  I E G
Sbjct: 155 IITITGSYGKTSIKNFVYQLLKDDFKAYKTPRSVNTIKGIILDINTSLPEDTEIYITEAG 214

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G+I+ +   +  H A++  I P HL  F  IE I   K E+FE          +YD
Sbjct: 215 ARERGDIKTIVKFLENHYAILGKIGPQHLEYFKTIENIEKTKLEVFESNNLIKG--FSYD 272

Query: 229 DSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             + E ++K K     IK          A  +  +W         ++++ G+      + 
Sbjct: 273 IPYRENVIKIKDKIHNIK----------ATLEKLEW---------DLEINGELHHFECNI 313

Query: 288 IGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           +G   A N  ++L I   L   D++T  + +    P   R ++    +  G   +ID+S+
Sbjct: 314 LGEFNAIN--ISLAIYQALEFLDIETIKEKVLKLEPIPHRLQK----IEVGGKIIIDDSF 367

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           N N   M  +  +   I  H  GR+I V   + E  E   + +I LA+ ++
Sbjct: 368 NGNIEGMLKSFKL---IKTH-PGRKIIVTPGIIEGNE---NLNIKLAKAIN 411


>gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 497

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 157/373 (42%), Gaps = 46/373 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F AIKG ++DGH  I   V +GA L++V   + A+  ++      VD   
Sbjct: 33  DSRQVEAGACFIAIKGENFDGHQAIAEVVAQGAKLIIVEQ-LPANYQTIPANFVLVDSSF 91

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--- 147
            A   LA         K  ++A+TG+ GKTTT  M++  L+S+      IG+ +  +   
Sbjct: 92  RAQAILANKFYQEPSRKLKVVAVTGTNGKTTTSSMISDLLTSLDHKTGKIGTLHYKVADT 151

Query: 148 ---GVPLTLARMPVDVDFG-IFELGM--------SH---LGEIRFLTHLVRPHIAVITTI 192
               V  T   + +   F  + E G         SH   LG + +         A+ T +
Sbjct: 152 YYPAVNTTPNALHLQALFAEMLERGCQDAVIEASSHALSLGRLWY----TDVDCAIFTNL 207

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIF---------LNYDDSFFELLKAKSHALG 243
              HL     ++  A AK+ +F  L   G  F         +N DD ++E++ A++ A  
Sbjct: 208 TREHLDFHKTMDNYAYAKSLLFSQL---GQAFHQGRPRLAIINKDDPYWEVM-AQATAAD 263

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T     +   A     + K+      +    Q   +E+   G  Y+++  +   L + 
Sbjct: 264 LVTYSLVDEEATAYASQIQNKETGLAFKLHFNDQVFELELPMRG-HYNVSNYLAAFLCLA 322

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                DV   ++A   F    GR +    ALN+ F  ++D ++ ++     A   V+ ++
Sbjct: 323 CYYEIDVANILRATKDFKGVSGRME--VLALNKDFDVVVDFAHTSD-----ALERVMQEL 375

Query: 364 SPHGEGRRIAVLG 376
             H +GR +A++G
Sbjct: 376 VSHKQGRLLALMG 388


>gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
 gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
          Length = 508

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 168/409 (41%), Gaps = 65/409 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD     L +      IK  +++  KS  ADF +         S+++ +      
Sbjct: 246 GVINLDD-----LYSSDFKNAIKKSFTYSLKSSKADFFV---------SFIDEKTDSTRF 291

Query: 282 EVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
           E  H G+ Y            +N++  L +VS IL  D+   +  L      +GR     
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMD--S 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 350 INLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393


>gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida GB-1]
 gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1]
          Length = 496

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 162/402 (40%), Gaps = 46/402 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V         +    +P+
Sbjct: 18  LIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAVAYEEQGATVLPLTEVPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++  L+   VA R   + +    ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 78  IPVKGLIAQLSD--VAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGM-----------SHLGEIRFLTHLVRPHI 186
           +        L   R+    P+ V   +++L             SH  E   +  L    I
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHALEQGRVAAL-EFDI 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHAL 242
           AV+T ++  HL     +E   +AKA++F          +N DD+F   L A    +    
Sbjct: 195 AVMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDAFGRRLAADFARRPSVD 253

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMAQN 295
            I T       +N D  L     C E ++ +       V  QG+ + +    +G     N
Sbjct: 254 HIDTRLLSYSLENPDASL----FCREAAFSDDGVRATIVTAQGERI-LRSQLLGRFNLSN 308

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ML  +  +  L   +D  +K     H   GR +R    L  G   L+   Y   P +++ 
Sbjct: 309 MLAAVATLLALDYALDEILKVTPQLHGPVGRMQR----LGGGDKPLVVVDYAHTPDALE- 363

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              VL  + PH  G+ + + G   +     +    ++AE L+
Sbjct: 364 --KVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLA 403


>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
 gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
          Length = 496

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 156/400 (39%), Gaps = 67/400 (16%)

Query: 19  IGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           + +VP   V G        I  DSR       F  I G H D H FI    + GA  V+ 
Sbjct: 9   VALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGARAVLT 68

Query: 71  ---NTDMVASIGSLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + D+   +  L +P     +D ++         A +R    +I ITG+ GKTTT  +
Sbjct: 69  ERASVDVPDGVAVLYVPNLQEALDTIVPYFYDYPARA-MR----VIGITGTNGKTTTSYL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVD-VDFGIFE--- 166
           +   L         IG+    I    +P +            LA M    +D  + E   
Sbjct: 124 VRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEVSS 183

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEK 219
             L +  +  I F T       A  T +   HL     +E  A AKA +FE     G ++
Sbjct: 184 HALALGRVAGIEFDT-------AAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKE 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             T  LN DD+  E ++A +H      + ++G    AD   +  +   +   + +   GK
Sbjct: 237 GKTAVLNADDAASETMRAHTHC----PVITYGVDHPADLTAQDVQLACDGMELTLMHGGK 292

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTA--IKALSVFHPKEGRGKRYRCALNQ 336
            +  +H GI G     N+L  +G  + L   V+ A    AL+ F    GR +  R    Q
Sbjct: 293 RLFHLHTGITGLFNVHNVLAAVG--ASLAEHVEAADISAALTAFTGVPGRFELVR--EGQ 348

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            F  ++D  Y   P  M+  +     ++   +GR IAV G
Sbjct: 349 DFAVIVD--YAHTPDGMENVLRTARAVT---KGRIIAVFG 383


>gi|237739354|ref|ZP_04569835.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
 gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
          Length = 432

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 176/431 (40%), Gaps = 58/431 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H D  +F +    K  G+     D V  +    I V  +D++ 
Sbjct: 32  DKKAMTSEEAM-----QHLDNIEFFI----KSPGIPY--NDFVKEVQKRGIKV--LDEIE 78

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + V   L++K  IIAITG+ GK+TT    T  +S +         Y  +IG  L+
Sbjct: 79  VAYNYM-VEKNLKTK--IIAITGTNGKSTT----TAKISDLLNHAGYKACYAGNIGRSLS 131

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A +   D+DF   EL    L  +       RP+I++I  + P H+  +   +E    K 
Sbjct: 132 EALLHEKDLDFVSLELSSFQLENVENF----RPYISMIINMGPDHIERYKSFDEYYDTKF 187

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +   +      N DD   E    ++  +  K I S  KSK A+  +   K    + +
Sbjct: 188 NIAKNQNENQYFIENIDDVEIE---KRAKQIKAKRI-SVSKSKEANVYVEDNKIYVGKDF 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + ++    S++      G H  +N L  +    IL  D +   + L V  P E R + + 
Sbjct: 244 I-IEADKLSLK------GIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELF- 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N G    I++S   N  S K AI              I + G   +  +L+      
Sbjct: 296 --FNYGKVKFINDSKATNVDSTKFAI--------QANKDSILICGGYDKGVDLAP----- 340

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLV-DGDV 446
           LAE++   NI  V+L G     ++  L +    +  +H  ET++   L ++     D D 
Sbjct: 341 LAEMIK-ENIKEVYLIGVIADKIETELKKVGYEASKIHKLETIENSLLDMKKRFTKDSDE 399

Query: 447 VVVKSSNSCGF 457
           V++ S  +  +
Sbjct: 400 VILLSPATSSY 410


>gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
          Length = 489

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 21/209 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+  DSR +   + F A+KG   DG+ FI  A+  GA  +V ++    + G  ++P +
Sbjct: 22  VTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARAIVTDSREAWAAGG-AVPFY 80

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   AL  +A  V         I A+TG+ GKTTT  +L   L S+ +    IG+  
Sbjct: 81  LVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTTTAFLLEQMLKSVNRKCLLIGTIE 140

Query: 145 NHIGVPLTLAR--MPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAV 188
            HIG  + ++    P   D                + E+    L + R     V   +A+
Sbjct: 141 THIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVMEMSSHALAQERVWG--VPVDVAM 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            T +   HL     +E    AKA +FEG+
Sbjct: 199 FTNLTQDHLDYHGTMERYFQAKARLFEGV 227


>gi|254303962|ref|ZP_04971320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324154|gb|EDK89404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 432

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 142/336 (42%), Gaps = 39/336 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            +G+   +  D +++  +EA       H DG +F +    K  G+     D V  +    
Sbjct: 22  KEGYETIVVDDKKAMTSEEAL-----NHLDGLEFFI----KSPGIPY--NDFVKEVQKRG 70

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           I +  +D++  A N + +   L++K  IIAITG+ GK+TT    T  +S +        +
Sbjct: 71  IKI--LDEIEIAYNYM-IEKDLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKAA 121

Query: 143 YNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           Y  +IG  L+   +   D+DF   EL    L  +       +P+I++I  + P H+  + 
Sbjct: 122 YAGNIGRSLSEVLLKEKDLDFISLELSSFQLENVENF----KPYISMIINMGPDHIERYK 177

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             +E    K  I +   +      N DD   E    ++  +  K I S  K K AD  ++
Sbjct: 178 SFDEYYDTKFNIVKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVK 233

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             K C  ++ + + +   S++      G H  +N L  +    IL  D +   + L +  
Sbjct: 234 NDKICHGENTI-IDVDKLSLK------GIHNLENTLFMVATAEILKIDKEKLKEFLMIAT 286

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           P E R + +    N G    I++S   N  S K AI
Sbjct: 287 PLEHRTELF---FNYGKLKFINDSKATNVDSTKFAI 319


>gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS185]
 gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS185]
          Length = 499

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 28/230 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80
           N +++DSR+I   + F A+ G   DG  FI  A+  GA  V+V+TD     G        
Sbjct: 21  NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHSDNV 80

Query: 81  ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134
              + I VF +   + A+         +S  T   +I ITG+ GKT+T +++   ++S+ 
Sbjct: 81  EHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140

Query: 135 KTYACIGSYNNHIGVPL-----------TLARMPVDVD---FGIFELGMSHLGEIRFLTH 180
           +  A +G+  N +   L           TL R   D +     +  + +S  G ++    
Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            V   +AV T +   HL     +E  A+AK  +F      G   LN DD+
Sbjct: 201 AVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDA 249


>gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
 gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
          Length = 487

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 34/359 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           +QA++  S  ++ Q  +    I+S  + P + F   +G  +D H ++  A++ GA  V+ 
Sbjct: 3   IQALK-RSAAVLEQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIA 61

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           N  +      L IPV   +    +L  + AV      K   I +TG+ GKTT    L   
Sbjct: 62  NRTL-----HLDIPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQM 116

Query: 130 LSSIKKTYACIGSYN-NHIGVPLTLARMPVD---------------VDFGIFELGMSHLG 173
           L+    T A IG+    +  V + L+    D               V   + EL    L 
Sbjct: 117 LNQ-SSTSAYIGTLGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHALA 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           + R     +   + +IT I   HL      +    AK +I + ++  G   +N DD    
Sbjct: 176 QDR--AGFLDLEVGIITNIGRDHLDYHRTKDAYVQAKLQIIDRIKPGGYAVINMDDPHAP 233

Query: 234 LLKAKSHALGIKTI-----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            + A+ H   +KT+     Y    +++ADF  ++           +  +GK   V     
Sbjct: 234 AMFARCHGR-VKTVSFSIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                +NML     +      +D     L+   P +GR +     LN G   L+D ++N
Sbjct: 293 FLFNVENMLAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQ--TLNNGATGLVDYAHN 349


>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
 gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
          Length = 483

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 57/332 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQ I     G VP   V   + DSR +   + F A +G  +DG+DF   AV++G
Sbjct: 1   MNLKELLQGISAKIYGKVPTLEVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-----NKLAVA--ARLRSKATIIAITGSV 117
           A         +A + S   P   +  ++ +       +LA     R   K  +  +TG+ 
Sbjct: 61  A---------IAILSSFYNPFLSIVQIVTSCVEQLEAELAAKFYGRPSEKLEVFGVTGTN 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VP------------LTLARM 156
           GKTT   M+   L    K    IG+  + +G          P            +   R 
Sbjct: 112 GKTTVTYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRK 171

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            V ++     L ++   +  F        + ++T +   HL     +E   +AK ++F  
Sbjct: 172 AVAMEVSSIGLELNRTAQTSF-------DVGILTNVTLDHLDFHGTLENYLTAKEKLFSQ 224

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L K G   +N D  +     ++  ++      ++G  + A+     ++ C     +++ L
Sbjct: 225 LPKNGCAVINADSPY----ASRFCSIASSRCVTYGIEEAAE-----YRACD----LQLSL 271

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            G    +VH G  Y     ++    + + L A
Sbjct: 272 LGTRYTLVHRGKSYLCKSPLIGRYNVYNTLAA 303


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 49/327 (14%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T +      V +   L IP          L++  + A L ++   IA+ GS
Sbjct: 67  RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 117

Query: 117 VGKTTTKEMLTIAL--SSIKKTYACIGSY-----NNHIGVPLTLARMPVDVDFGIFELGM 169
            GKTTT  M+ + L  +S+  T    G       N  +G    L     + D    +L  
Sbjct: 118 HGKTTTTSMIGVTLDRASVSPTVIVGGEVPDLGTNAKLGTSRYLVSEADESDGSFLKL-- 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                        RPHIAV+T +   H+ ++  +E+I  A       ++  GT  L Y++
Sbjct: 176 -------------RPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVLCYEN 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                L A++     +T+ S+     AD++    + C       V  +G ++  +  H  
Sbjct: 223 EILRRLGAETD----RTVVSYAIDAAADYRAADIETCGSVISFTVFERGTALGRISLHIP 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +  +   D D    AL+ FH   G  +R++    +    ++D+ Y  
Sbjct: 279 GRHNVLNALACVAVARLAGLDFDRIADALAHFH---GAKRRFQTKGKERGIWVVDD-YAH 334

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375
           +P  + A ++   Q  P   GR + V 
Sbjct: 335 HPTEIAATLAAARQTEP---GRLVCVF 358


>gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
 gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
          Length = 490

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 152/368 (41%), Gaps = 30/368 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+ +DSR + P +AF A++G   DG  F+  A+  GA  V+   +  +     ++P  
Sbjct: 22  LSGLQLDSRKVMPGDAFLAVQGVASDGRQFVSQAIAAGAVAVLAEAETFSVQQEQAVPRV 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
               +  ++ +LA        S   ++ +TG+ GKT+    L  AL+++    A +G+  
Sbjct: 82  NFPGLSRSVGELAARWYGEPGSAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVGTLG 141

Query: 144 -----NNHIG-----VPLT----LAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                N  I       P+T    LAR +    D    E+    L + R     V   +AV
Sbjct: 142 LGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVAMEVSSHALDQHRLGPTPV--SVAV 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + ++  HL     +E   +AK+ +F   +      +N DD     L     A G++ + 
Sbjct: 200 FSNLSRDHLDYHGDMEAYLAAKSVLFT-RDGVKLAVINCDDPVAYSL-VGCLADGVRCV- 256

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG    A  +       +E +  E+ + G+S  V     G     N++   GI+     
Sbjct: 257 TFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVTLPLFGRFNLSNLMAVAGILHGQGV 316

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D+   AL+   P  GR +  + A   G  T+I + Y   P  ++ A   L     H  
Sbjct: 317 STDSLAGALAAITPVPGRMEPVQQA---GCPTVIVD-YAHTPDGLEKA---LQACRAHFA 369

Query: 369 GRRIAVLG 376
           GR   ++G
Sbjct: 370 GRLFCIIG 377


>gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
 gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
          Length = 475

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 148/369 (40%), Gaps = 43/369 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---M 281
           DD +  E+L   S     K +  +G +++A  +    +    Q    V   L G +   +
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRHLNGHAEPPL 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338
           +VV +  G H  QN L  + I + L       +KAL  FH    R +RY     A   G 
Sbjct: 273 DVVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATADGTGT 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTL+D+ Y  +P  M A +S      P   GRR+ +             F  D  +VL  
Sbjct: 333 FTLVDD-YGHHPVEMAATLSAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLGT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +   D  AL R++ V       + E M+ +   I ++   GDVV
Sbjct: 388 VDALLLAEVYAAGEAPIVAADGRALTRALRVAAKVEPVFVEQMEEMPQAIMNAARPGDVV 447

Query: 448 VVKSSNSCG 456
           V   + S G
Sbjct: 448 VTMGAGSIG 456


>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
          Length = 490

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 153/370 (41%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+KG   DG  F+  AV++GA  +V   D V  I    +PV 
Sbjct: 24  ITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIVAGKDTV--IADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD   AL   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++ D G+    M   SH  + R L   V+   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELADEGVTHAAMEASSHGLDQRRLDG-VKLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + IEE   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi 80a]
          Length = 508

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +    K   +A+     YS  KS  ADF +         S+++ +      E
Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292

Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332
             H G+ Y            +N++  L +VS IL  D+   +  L+     +GR      
Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
 gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
          Length = 508

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +    K   +A+     YS  KS  ADF +         S+++ +      E
Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTNSTRFE 292

Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332
             H G+ Y            +N++  L +VS IL  D+   +  L+     +GR      
Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
 gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
          Length = 508

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 168/408 (41%), Gaps = 63/408 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +    K   +A+     YS  KS  ADF +         S+++ +      E
Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292

Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332
             H G+ Y            +N++  L +VS IL  D+   +  L      +GR      
Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD--SI 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393


>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
 gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
          Length = 488

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 153/389 (39%), Gaps = 46/389 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  ++  S+       ++ I  DSR +   + F AIKG   DGH++I  A+++
Sbjct: 1   MANLKDILYKVKLISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GA + +V  D+ + I    +     D+   AL  +A         K  +IA+TG+ GKTT
Sbjct: 61  GA-VAIVCEDIPSDIHP-QVTYVQTDNSAKALGVMAANYFGHPSEKLKLIAVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVDVDFG--- 163
           T  +L     ++      I +  N I    +P T            L +M   VD G   
Sbjct: 119 TVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKM---VDSGCNI 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +F    SH  E   +  L +   AV T I+  HL      +    AK ++F+ L      
Sbjct: 176 VFMEASSHAIEQERMAGL-KLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDDLPSDAFA 234

Query: 224 FLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            +N DD       +  KA  +   +K +  +           K K  S  S   ++L   
Sbjct: 235 LVNVDDKRGMVMLQNCKASKYTYSLKMMAIY-----------KAKVLS-NSIQGLELNID 282

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +V    IGY  A N+L       +L  + +  +  LS    K GR +  +   N G  
Sbjct: 283 QKDVWFRQIGYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFE--QVPNNAGIT 340

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGE 368
            ++D  Y   P +++  +  +       E
Sbjct: 341 AVVD--YAHTPDALENVLQTIDNFRTGNE 367


>gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi JD1]
          Length = 508

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +    K   +A+     YS  KS  ADF +         S+++ +      E
Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292

Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332
             H G+ Y            +N++  L +VS IL  D+   +  L+     +GR      
Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
 gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
          Length = 530

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 30/231 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-- 82
           GF   +  DSR+I   + F AI G   DG  +I  A+++GA LVV   + +   G ++  
Sbjct: 28  GFCGDLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFA 87

Query: 83  --------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                   +  + ++  L  L K    A  +   T++ ITG+ GKTTT ++L   LS+ +
Sbjct: 88  SSDNTVAIVKFYQLNQHLFTLTKNYYQAP-QDNMTLVGITGTNGKTTTSQLLAQMLSAYQ 146

Query: 135 KTYACI-----GSYNNHIGVPLT---------LARMPVDVDFGIFELGMSH--LGEIRFL 178
           KT A I     GS +N   +  T         L +   D  F    + +S   L + R  
Sbjct: 147 KTCAVIGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQ 206

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L    IA+ T ++  HL     +     +K +IF   +      +N+DD
Sbjct: 207 ADLFD--IAIFTNLSRDHLDYHGSMASYGESKKQIFSA-DSNQVAVVNFDD 254


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 138/331 (41%), Gaps = 57/331 (17%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T +      V +   L IP          L++  + A L ++   IA+ GS
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEI 175
            GKTTT  M+ + L              +  GV  T     V V   + +LG  + LG  
Sbjct: 121 HGKTTTTSMIGVTL--------------DRAGVSPT-----VIVGGEVPDLGTNAKLGTS 161

Query: 176 RFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           R+L             +RPHIAV+T +   H+ ++  +E+I  A       ++  GT  L
Sbjct: 162 RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVL 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            Y++     L A++     +T+ S+     AD++    + C       V  +G ++  + 
Sbjct: 222 CYENEILRRLGAETD----RTVVSYAIDAAADYRAADIETCGSVISFTVFERGTALGRIS 277

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N L  + +  +   D D    AL+ FH   G  +R++    +    ++D+
Sbjct: 278 LHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFH---GAKRRFQTKGKERGIWVVDD 334

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            Y  +P  + A ++   Q  P   GR + V 
Sbjct: 335 -YAHHPTEIAATLAAARQTEP---GRLVCVF 361


>gi|317012551|gb|ADU83159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori Lithuania75]
          Length = 493

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168
           +IAITGS GKT+TK  L   L +    +A   S N  +G+   + +   D  +  I E G
Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIAEAG 229

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
             + G+I+ +T L+ PH+ V+  +   HL  F  +E I   KAE+ +   LEK
Sbjct: 230 ARNKGDIKEITRLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282


>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 41/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  DSR +AP + F  +KG   DGH F + A++KGA + +++   V+    L   V 
Sbjct: 119 ITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIEKGA-VAIISLMEVSLTEGLKAAVI 177

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D    L+ LA  +      K +++ ITG+ GKTTT  +L     ++      +G+  
Sbjct: 178 -VEDTSVILSALAGVIYGHPSKKLSVVGITGTNGKTTTSYLLQSLYEAMGLQVGLLGTIQ 236

Query: 145 NHIG----------VP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            +IG           P       L  + +    +  I E+  SH G +      +   +A
Sbjct: 237 YYIGGKNKLEADHTTPEALNLQNLMASMVQNGTEVCIMEVS-SH-GLVLGRCEDIEFDVA 294

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGI 244
           V T +   H+      EE   AK  +F  +   E+   + +N DD       ++ +    
Sbjct: 295 VFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQRKV-VNIDDPNVSYFVSQGNQDVP 353

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              +  G  K+AD      K    +S + V+     +E+    +G H   N+L  + +  
Sbjct: 354 VVTFGMG-DKSADVYPLAVKLSLVESEVLVRTPQGDVEISSRLLGRHNVYNILTAVAVGI 412

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLS 361
            + A ++  ++ +       G     RC L    Q F  L+D ++  +     A   +L 
Sbjct: 413 AVGAPLEDIVRGIEAVDAVPG-----RCELIDEGQTFAVLVDYAHTPD-----AVARLLD 462

Query: 362 QISPHGEGRRIAVLG 376
            +   G  R I VLG
Sbjct: 463 TVRECGPKRIITVLG 477


>gi|78777404|ref|YP_393719.1| cytoplasmic peptidoglycan synthetases-like [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497944|gb|ABB44484.1| Cytoplasmic peptidoglycan synthetases-like protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 481

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
           +VA  GS     F V+  L    K     +L+S  K  I+AITGS GKT+ K  L   LS
Sbjct: 129 LVAYAGS-----FAVEKFLFESFKKEAKKKLQSMEKLQIVAITGSYGKTSIKNFLYEILS 183

Query: 132 SIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              + YA   S N   G+   +   +P + +  I E G    G+I  +T  + P   V+ 
Sbjct: 184 KKYRVYATPRSVNTLGGIIKDINESLPNESEIYICEAGARESGDIYEITTFLEPQNVVVG 243

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +  AH+  F  ++ I S K EI +    +   I  +  D   E           K  + 
Sbjct: 244 KVGLAHIEYFKTLQNIISTKLEIMKSPRLQRAFIHTSVTDEPHE-----------KVTFF 292

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +N D +L       + +  E+ L  + + +  + +G     N+ + + I       
Sbjct: 293 GNEIQNIDAKL-------DGTDFEIHLDNEILSLHTNVLGSFQTMNIAVAIRIAKTFGMS 345

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D  I+A+    P E R +  +     G   ++D+ YN N   M  A+ + S      EG
Sbjct: 346 NDEIIEAVRGLKPVEHRLQMIKA----GGKLILDDGYNGNIDGMLEAVRLCSL----HEG 397

Query: 370 RRIAVLGDMCE 380
           R++ V   + E
Sbjct: 398 RKVIVTPGLVE 408


>gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 487

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 152/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  A+A R     +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAAQLS--AIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F   +    + +N DD F   L A      +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRV-INLDDDFGRELAAIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +KAL       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQR----LGGAEKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
 gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
          Length = 486

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 124/315 (39%), Gaps = 28/315 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI+IDSR I     F AIKG   DGH +I  A++ GA  ++V  D+   + S +I    V
Sbjct: 25  GINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELGACAILVE-DIPEKL-SENITYIQV 82

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                A+ K+A         K  ++ +TG+ GKTT   +L             + +  N+
Sbjct: 83  KSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKTTVATLLYNMFRKFGHKVGLLSTVCNY 142

Query: 147 I---GVPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVITT 191
           I    VP +    P  ++  I    M   G E  F+   +H +             + T 
Sbjct: 143 IDDKAVPASHT-TPDPIELNILLAKMVEEGCEYAFMECSSHAIHQRRIGGLKFAGGLFTN 201

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL      E   +AK   F+ L K      N DD    ++     A    T+ ++ 
Sbjct: 202 LTRDHLDYHKTFENYRNAKKMFFDDLGKDAFAITNADDKNGMIMVQNCKA----TVKTYS 257

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             + ADF+    +   E  ++EV   GK + V    IG     N+L   G   +L    +
Sbjct: 258 TKRAADFKAHLLECHFEGMYLEV--NGKEVGV--QFIGKFNVSNLLAVYGAAVMLGKKPE 313

Query: 312 TAIKALSVFHPKEGR 326
             + ALS      GR
Sbjct: 314 DILVALSALKNVNGR 328


>gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
 gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
          Length = 508

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122
           VV + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                  K+ + +   S           IK  Y      +  I   L+   +  +  + I
Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222
            E   SH  ++     +   + AV+ T I   HL     I+   + K  +F  + +  G 
Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +    K   +A+     YS  KS  ADF +         S+++ +      E
Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292

Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332
             H G+ Y            +N++  L +VS IL  D+   +  L+     +GR      
Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393


>gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 494

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+  + 
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTP 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 254 C----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYSVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
          Length = 488

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 150/379 (39%), Gaps = 62/379 (16%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           IDSR + P + F A+ G    G DF   A+++GA  VV     + +  S    V   DD 
Sbjct: 26  IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAVVAAPGTLPATLSQQNCVVH-DDP 84

Query: 92  LGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--- 146
             AL  LA A     R    +I +TG+ GKTT   +L  AL  + +    IG+  N    
Sbjct: 85  REALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIANRWPG 144

Query: 147 ------IGVP------LTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                 +  P        L+RM  D VD    E+    L + R  T  +R   AV+T ++
Sbjct: 145 HEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRR--TAGLRFSAAVLTNVS 202

Query: 194 PAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSF 250
             HL     +E   +AK+ +F    L + G   +N DD +   L+     A G    YS 
Sbjct: 203 QDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWG----YSL 258

Query: 251 GKSKNADFQL---------RKWKQCS----EQSW-MEVQLQGKSMEVVHHGIGYHMAQNM 296
              K  D  L         RK  + S     Q W +   L G+     H+G     AQ  
Sbjct: 259 HSEKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGR-----HNGANLMAAQAT 313

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ LG         D A+  LS   P  GR +R   A     F      Y   P +++  
Sbjct: 314 LLALGF-----GPADAAV--LSDAPPVPGRLERVENAAGLDIFV----DYAHTPDALENV 362

Query: 357 ISVLSQISPHGEGRRIAVL 375
           +  ++ +    +G R+ V+
Sbjct: 363 LQAMTAL----DGNRLLVV 377


>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
 gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
          Length = 486

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 38/389 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +L   +QG++  I     + GI+ DSR + P + F A+ G   +G  +I  A+ +GA 
Sbjct: 11  FPELSAQLQGNAAEI----DIAGITADSRQVKPGDLFVAVAGTKANGSAYIADALSRGAA 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT--- 121
            V+V     A  G+   PVF + +    L +   AARL  R   T++A+TG+ GKT+   
Sbjct: 67  AVIVAEGSGADAGA---PVFELSEPRRFLAQ--AAARLFGRQPETMVAVTGTAGKTSVAS 121

Query: 122 -TKEMLT---IALSSIKKTYACIGSYNNHIGV----PLTLARMPVDV-DFGIFELGM--- 169
            T+++     +A + I  T       N++  +    P++L ++  ++ D G+    M   
Sbjct: 122 FTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELADEGVTHAAMEAS 181

Query: 170 SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           SH L + R     VR   A  T +   H+     +E   ++K  +F  L   G+  + + 
Sbjct: 182 SHGLDQSRL--DGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFA 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D  +      +       + + G  +N DF  L++ +    +   EV +     E+    
Sbjct: 240 DDQWSAEAIAAARKAGHDVRTVG--RNGDFISLKRVEHFRHKQSAEVHVGDDIFEIHVPL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L+  G+      +   A  AL       GR          G    +D  Y 
Sbjct: 298 AGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGR-LELVGQTKDGALAYVD--YA 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++   +VL  + P   GR I V G
Sbjct: 355 HKPDALE---NVLESVRPFTTGRVIIVFG 380


>gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM
           273]
 gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 100/237 (42%), Gaps = 33/237 (13%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  ++ DSR + P   F A++G   DG  FI  A+ +GA   VV+ D    +     P 
Sbjct: 36  MVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKDAIARGAS-AVVSEDFPMELALNGPPC 94

Query: 86  FGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             V D   AL+  A       A RLR    I+ +TG+ GKTTT  +++  LS    +   
Sbjct: 95  IRVPDARRALSLAAAAYYGHPADRLR----IVGVTGTNGKTTTARLISSILSMNGISCGY 150

Query: 140 IGSYNNHIG---VPL-----------TLARMPVDVDFGIFELGMS----HLGEIRFLTHL 181
           IG+    IG   +PL            L RM VD       + +S     LG +    H 
Sbjct: 151 IGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGCRAVSMEVSSHALELGRV----HG 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +    AV T + P HL     +E  A AK ++F+ L   G    N +D     + A+
Sbjct: 207 IAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPGGIGIFNTEDPMATFMAAR 263


>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 463

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 146/368 (39%), Gaps = 42/368 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F  I+G   DGH +   AVQ GA  V+   ++     SL++PV  V D  
Sbjct: 6   DSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAEREL-----SLNVPVIIVKDTA 60

Query: 93  GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY------- 143
            A+  LA A   +   +  +I ITG+ GKTTT  ++   L+   K+   IG+        
Sbjct: 61  RAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTMYTKVAGE 120

Query: 144 ----NNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                N     LTL +     +   V+  + E+    L E R   H    ++AV T +  
Sbjct: 121 TLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGR--VHGCDFNVAVFTNLTQ 178

Query: 195 AHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            HL     ++E   AK  +F  L       K     LN DD      +  + A     I 
Sbjct: 179 DHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAA----QIL 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     AD +    +  +  +  ++        V    IG     N+L  +G       
Sbjct: 235 TYAIDNEADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAALASGL 294

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +++  ++++S      GR +       Q F  ++D  Y   P S++ A+  + + +   E
Sbjct: 295 ELEAILESISTVKGVPGRFETVDAG--QDFSVIVD--YAHTPDSLENALETVKEFA---E 347

Query: 369 GRRIAVLG 376
           GR   V+G
Sbjct: 348 GRIFVVVG 355


>gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
 gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
          Length = 464

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 25/282 (8%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S +IP+    D+L  L K         K +II + G+ GKTTT  M+ + L + K     
Sbjct: 85  SKNIPILHRSDLLAELTK--------EKKSII-VGGAHGKTTTTSMIALVLENNKTDPTI 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           I        V   L  +  +   G  E  ++   E       + P+I V+T I   HL  
Sbjct: 136 I--------VGGELEDIGGNAKLGSGEYLVAEGDESDGSILKLNPYILVVTNIDNDHLDY 187

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +  IE I S   ++ E + + G + LN D      +  K   +  K  Y++G S NADF 
Sbjct: 188 YENIENIKSTFLKVIEKVPEDGYVLLNLDCKNIRDIIGK---IKDKKYYTYGFS-NADFT 243

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  S  S  +V  +   +  V   + G H   N L  +GI  IL  D +  IKAL 
Sbjct: 244 ADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILNSLSAIGISYILGLDFEQTIKALE 303

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            FH  + R +      N     L+ + Y  +P  + A +  L
Sbjct: 304 KFHGVQRRIQFKGVIEND---VLVFDDYGHHPTEILATLETL 342


>gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 525

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 127/328 (38%), Gaps = 30/328 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +N IS DSR+  PQ  F  + G ++DGH F+  A+ KGA ++      +    S  
Sbjct: 39  PSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGAAVLAGENAAILEEFSRK 98

Query: 83  IP---VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            P       +D    L +L++    R+  K   + ITG+ GKTT    +   ++++    
Sbjct: 99  FPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALGIPS 158

Query: 138 ACIGSYN--NHIG-------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH--- 185
             IG+    + +G        P T     +   F  F      L  +   +  +      
Sbjct: 159 GSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQRTA 218

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAK 238
                +A+ T ++P HL      E    AK ++F   ++     +N DD     +++K  
Sbjct: 219 GINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFRQAKRA---VVNLDDEGMGADIIKDF 275

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +L     YS  K   AD +    +  ++ +  E++L   S  V     G +   N+L 
Sbjct: 276 QGSL---LTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLS 332

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR 326
            +     L   +   I+AL       GR
Sbjct: 333 AICTAMHLGFTIGQIIEALPRVENPSGR 360


>gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
 gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
          Length = 474

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 36/312 (11%)

Query: 88  VDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           ++  L A+ K     +L +   TIIA+T S GKT+ K  +   L      Y    S N  
Sbjct: 133 IESYLMAIYKKEARKKLETIDPTIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTL 192

Query: 147 IGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            G+   +   +P   +  + E G    G+I  +T  +  H AV+  + P H+  F  +E 
Sbjct: 193 AGIIKDINTALPQVCEVYVVEAGARERGDILEITKFLNHHYAVVGKVGPQHIEYFKTLEN 252

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRK 262
           I + K EI    ++    FL      ++ L  K     +K    FG   K+  AD     
Sbjct: 253 IIATKLEILHS-KRLKKAFL------WDGLPVKDDPKFVK----FGSNIKNVKADLDGVS 301

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           W         +++LQG+        +G   A N+   + +   L  D+ T  K +S    
Sbjct: 302 W---------DLELQGEIFHFQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKG 352

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E R +R    +  G   +ID+S+N N   M A+  ++        GR++ V   + E  
Sbjct: 353 VEHRLQR----IEAGGKVIIDDSFNGNLEGMIASYELVKNYP----GRKVVVTPGIVESD 404

Query: 383 ELSQSFHIDLAE 394
           E S   +I+LA+
Sbjct: 405 EKS---NIELAK 413


>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
 gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
          Length = 450

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +  T
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAT 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 493

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G +    D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        +VD+ + E+     H+  ++       
Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYCVMEVTSQGLHMERVKGCNF--- 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKA 237
             IAV T +   HL      +E    K  +F  L             LN DD   E  K 
Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDPSVEYFKK 253

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 254 ITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++   
Sbjct: 310 AAITVALVEGIPLTNISDSLSTLKRIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 362

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS IS   +G+ I V G
Sbjct: 363 NVLSTISEFSKGKVITVFG 381


>gi|315928276|gb|EFV07592.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 431

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 98  KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E 
Sbjct: 158 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEA 217

Query: 214 F--EGLEK 219
              E LEK
Sbjct: 218 LNSERLEK 225


>gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 492

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F  +   +G  LVVVN +  + A++  + +P
Sbjct: 22  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 81

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 82  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 136

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 137 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRS----VEF 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 193 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 249 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 299

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 300 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 334


>gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
 gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
          Length = 505

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 135/359 (37%), Gaps = 34/359 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           FV  I  DSR   P + F  + G       ++  A+QKGA  ++    +      L +P 
Sbjct: 33  FVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTG----LQVPQ 88

Query: 86  FGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V DV  + AL    +A R         +TG+ GKTT   ++   + S  +     G+ 
Sbjct: 89  CIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTGLSGTV 148

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRP----------------H 185
             H  +    A +       + +L    L E+  R  TH V                   
Sbjct: 149 EYHDSISSRPASLTTPDANELSQL----LAEMVCRKATHAVMEVSSHALDQNRLAGIDLS 204

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +   H          A+ KA + + ++  GT+ LN+DD       A+  +   +
Sbjct: 205 VGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNWDDPTCRSFAAEVKSS--Q 262

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ ++     AD   +  ++ +  +  E+   G S+ V    IG H   N L        
Sbjct: 263 TLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAACLS 322

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS--MKAAISVLSQ 362
           L   +      +       GR +R  C   Q F  LID ++  +  S  +++A  + SQ
Sbjct: 323 LGVSLSEIALGIERLVTVPGRMERVTCG--QSFTVLIDYAHTDDALSHVIRSAKRLCSQ 379


>gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 173/413 (41%), Gaps = 50/413 (12%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A  +GA LVVV       N + V +I +  IPV    D+L  L    +A R  
Sbjct: 56  GHD---AANIRGADLVVVSSAIPPTNPEYVEAIKN-DIPVIHRADMLSTL----MATR-- 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGI 164
                IA++G+ GKTTT  M+++ L     +    IG   N IG   TL +       G 
Sbjct: 106 ---KGIAVSGAHGKTTTTSMISLVLEKGGMSPTVVIGGELNDIGGNATLGK-------GE 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           + +  +   +  FL   + P+IAV+T I   H+ ++  +E +  A  +    L+K G   
Sbjct: 156 YMVAEADESDGSFLK--LTPYIAVVTNIENDHMDHYKDMESMKEAYRKFIMNLKKDGFAL 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           L  D+     +  +         +++G +  AD+  +        S  EV  + + + E+
Sbjct: 214 LGTDNEHVRDVMKRVDV----PYFTYGINYPADYMPKNIHIEGVDSRFEVYYRNERLGEL 269

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H  G H   N    + +   L   ++    AL  F    G  +R++     G   ++D
Sbjct: 270 ELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAFR---GVQRRFQLIGEVGGVRVVD 326

Query: 344 ESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMCEMGELSQSFHIDLAEVL-- 396
           + Y  +P  +KA +     ++P+      +  R      + E  E   +F  D  EV+  
Sbjct: 327 D-YAHHPTEIKATLKAAKLLNPNKLYAVFQPHRYTRTKMLAE--EFGNAFE-DADEVIIT 382

Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            LY+     + G   + + +AL RS  +V Y +  + +  ++   +V GD V+
Sbjct: 383 RLYSAGEAPIPGVSSMLIVEALKRSGKNVTYIDDKEKIPDYLAERVVPGDFVL 435


>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 481

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 144/373 (38%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           + G+ IDSR +  +  F AIKG   DGH FI  AV +GA  V+  T M   +  G   + 
Sbjct: 23  ITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQGATAVLCET-MPTQLPQGVTFVQ 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +D +G +  +        K  ++ +TG+ GKTT   +L             + +  
Sbjct: 82  VESTEDAVGPVATM-FYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVC 140

Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           N+I    +P              L RM     ++   E     +    +G + F      
Sbjct: 141 NYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIGGLTFAG---- 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V + +   HL      E   +AK   F+ L K      N DD    ++   + A  
Sbjct: 197 ---GVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNADDKNGMVMVQNTRA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++     ADF+ +  +   E  ++E+       EV    IG     N+L      
Sbjct: 252 --AVKTYSTRSMADFKAKILECHFEGMYLEIN----GAEVGVQFIGKFNVSNLLAVYATA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  +  +S  H   GR +       +G+  ++D  Y   P +++  ++ + ++
Sbjct: 306 VMLGKRPEDILLVMSTLHSVNGRLQPLSSP--EGYTAIVD--YAHTPDALENVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
             +G+G+ I V G
Sbjct: 362 L-NGKGKVITVCG 373


>gi|86150175|ref|ZP_01068402.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597486|ref|ZP_01100720.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562423|ref|YP_002344202.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839291|gb|EAQ56553.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190078|gb|EAQ94053.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360129|emb|CAL34923.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926041|gb|ADC28393.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315930806|gb|EFV09802.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 475

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E 
Sbjct: 202 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEA 261

Query: 214 F--EGLEK 219
              E LEK
Sbjct: 262 LNSERLEK 269


>gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
 gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
          Length = 505

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 157/370 (42%), Gaps = 36/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR + P   F A++G    G      A ++GA  V +  D   +  +LSIPV 
Sbjct: 33  VTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGA--VAILWDEAEAAPALSIPVL 90

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +  AL  +  A+     +   ++A+TG+ GKT+  ++   AL  +      +G+  
Sbjct: 91  HLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFAGALEQLGVPTGVVGTLG 150

Query: 145 NH---------------IGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAV 188
                            I +   LA +  D    +     SH L + R     VR  +AV
Sbjct: 151 TGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHGLEQGRMAGLPVR--VAV 208

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +T +   HL      +  A AKA +F   GLE   T  LN DD+  + L  ++ A  I T
Sbjct: 209 LTRLGSDHLDFHGSQQAYADAKARLFAWPGLE---TAVLNADDALGQRLIRETTAEHILT 265

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G S  AD   R+ +  S+     +++ G++  V     G     N+L TL  +  L
Sbjct: 266 YSAVGAS--ADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVGNLLATLAALRAL 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A+ A+S      GR +R+   L  G   ++D ++     + +A  + L  + PH
Sbjct: 324 GHSWPAAVDAVSRLRGVPGRMERFE--LPSGALLVVDYAH-----TEQALAAALDALRPH 376

Query: 367 GEGRRIAVLG 376
             GR IAV G
Sbjct: 377 TAGRLIAVFG 386


>gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 509

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 35/372 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSL 81
           PQ     +++DSR   P   F A+ G H DG DF+  A++ G   V+   + +  S+   
Sbjct: 30  PQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLCEAEALPTSVPEQ 89

Query: 82  SIPVFGVDDVLGALNKL-----AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              V  V  + G L +L     AV A L     +I +TG+ GK++    L     ++   
Sbjct: 90  EARVLAVPGLRGQLGELGRHVFAVPASLE----LIGVTGTNGKSSVTHYLAALSEALGTP 145

Query: 137 YACIGSYNNHIGVP--LTLARM----PVDVDFGIFELGMSHLGEI--RFLTHLV------ 182
            A IG+    +G P  L  AR+    P+ +   + EL    +G +     +H +      
Sbjct: 146 AAVIGTLG--VGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVT 203

Query: 183 --RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             R H AV T ++  HL     +   A+AKA +F+  E      +N DD    L+ A   
Sbjct: 204 GCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQHRE-LALAVVNGDDRLSPLMLA-GL 261

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ + + G  +    ++  W   ++     +      +E+    +G     N+L+ +
Sbjct: 262 AKGVR-VLATGTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAI 320

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  + A+++    A +   P  GR +R           ++D  Y   P +++ A+  L
Sbjct: 321 ATLYGMGAELNALFSAAARLAPVPGRMQRL--VAENAPTVVVD--YAHTPDALRNALEAL 376

Query: 361 SQISPHGEGRRI 372
               P  +G ++
Sbjct: 377 RAHLPSSDGAKL 388


>gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 481

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 24/305 (7%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARM 156
           A+AA +R + ++ A+ G+ GKT+T  ML  ALS   +   Y   G      G  L     
Sbjct: 113 ALAALMRGRFSV-AVAGTHGKTSTAAMLVSALSGAGMSPDYVIGGRVGGRSGTGLG---- 167

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +    + E   S    + +     +P + VIT I   HL  +  ++ +A A A   E 
Sbjct: 168 --ETSTIVVEADESDGSLVAY-----QPDVVVITNIDADHLDQYEDVDTLARAFAGFAER 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              TG + +  DD     +     A GI+ +++FG+   AD  +R   +         + 
Sbjct: 221 AGTTGFVVMPEDDPHSRWVTRYLRAKGIR-VFTFGEGSPADLSIRLESELPGSVRFTARF 279

Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +      V   + G HMA+N    L     L A    A+  L+ +    G G+R+     
Sbjct: 280 RDDDEAAVEVPVPGSHMARNAGAALLTAVKLGASRSGAVLGLAQY---PGVGRRFELKGE 336

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + D+ Y  +  S++A+++ L + +  G   R+  + + C    L+Q F  ++A+ 
Sbjct: 337 PRGIRVYDD-YACHHTSIRASLTALRRTAMGG---RLIAVAEPCRQYRLAQ-FQAEIADA 391

Query: 396 LSLYN 400
           L++ +
Sbjct: 392 LAVAD 396


>gi|91776620|ref|YP_546376.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
 gi|122985406|sp|Q1GZ02|MURC_METFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91710607|gb|ABE50535.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
          Length = 475

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 48/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A + +  T+         IG  L  +     +  G + + 
Sbjct: 108 IAIAGTHGKTTTTSLIASILAEAGMDPTFV--------IGGRLEASGSNARLGTGEYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P I+V+T I   H+  +    E +  A  E  + L   G   +  
Sbjct: 160 EADESDASFL-HLT-PIISVVTNIDADHMDTYGHDFERLKGAFVEFLQRLPFYGMAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQG--KSME 282
           DD     +  +      K +  +G S+ A  ++R     +E   M     ++ G   + +
Sbjct: 218 DDPNVRAILPQIS----KQVMPYGFSEEA--RIRASNVQAENGRMHFTVTRINGVTTTFD 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQG 337
           V  +  G H   N L  + + S L       IKAL+ F   +G G+R+       A + G
Sbjct: 272 VTLNLPGRHYVLNALAAIAVASELNVPDGAIIKALAEF---KGVGRRFERYGEVPARDGG 328

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +FTL+D+ Y  +PA M A I+      P   GRR+ +             F  D  +VLS
Sbjct: 329 YFTLVDD-YGHHPAEMNAVIAAARDAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVLS 383

Query: 398 LYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             ++   + V+ +G   +   D  +L R+I V       + ET   L   I     DGDV
Sbjct: 384 SADVVLLTEVYAAGEAPIVAADGRSLVRAIRVAGKVEPLFVETPQELPQSILDMAQDGDV 443

Query: 447 VVVKSSNSCG 456
           V+V  + S G
Sbjct: 444 VIVMGAGSIG 453


>gi|224826079|ref|ZP_03699182.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
 gi|224601716|gb|EEG07896.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
          Length = 463

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 46/369 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +A + +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLTASVLAAAGLDPTFV--------IGGKLTAAGTNAKLGSGEFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P +AV+T I   H+  +    +++  A  +    L   G   L  
Sbjct: 160 EADESDASFL-HLA-PVMAVVTNIDADHMDTYEHSFDKLKQAFVDFLHRLPFYGRAVLCL 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEV 283
           DD+   E+L   +     K + ++G S +AD Q    +    Q   +V  +  +     V
Sbjct: 218 DDANVREILPRVT-----KPVTTYGFSDDADVQAANVRAVGGQMHFDVVARNGNQLHFPV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGF 338
           V +  G H   N L  + I     ADV +  + L+ F    G G+R++        + G 
Sbjct: 273 VLNLPGRHNVLNALSAIAIGLECGADVASIQQGLAEF---AGVGRRFQRYGEVACPSGGH 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTL+D+ Y  +P  M A ++ +    P    +R+ VL         ++    D  +VLS 
Sbjct: 330 FTLVDD-YGHHPVEMAATLAAVRGAFP---AQRL-VLAFQPHRYTRTRDLFEDFVKVLST 384

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            ++   S V+ +G   +   D  AL R++ V       + E +  L   I  ++ DGDVV
Sbjct: 385 VDVLLLSEVYAAGETPIVAADGRALARAVRVTGKVEPLFIEAIADLPQVILDTVQDGDVV 444

Query: 448 VVKSSNSCG 456
           +   + S G
Sbjct: 445 ITMGAGSIG 453


>gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus 04-02981]
 gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 494

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F  +   +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
 gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
          Length = 488

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 152/374 (40%), Gaps = 46/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           +N I  DSR +   + F AI+G   DGHD+I +A  +GA  +V     D V +     + 
Sbjct: 24  INNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGALAIVCEKIPDEVIN----GVT 79

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML----TIA------LSS 132
              V+D   AL  ++         K  ++ +TG+ GKTT   +L    T A      LS+
Sbjct: 80  YIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIATLLYDLFTKAGFKCGLLST 139

Query: 133 IK-----KTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +K       +  I +  + I +   L  M  V V+F   E+    + + R  T  ++   
Sbjct: 140 VKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVSSHGIDQHR--TTALKFEG 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHAL 242
            + T ++  HL       E    K   F+ L  +     N DD   E++    KAK H  
Sbjct: 198 GIFTNLSHDHLDYHKDFAEYRDVKKRFFDELPASAFALTNVDDKNGEIMLQNTKAKKHTY 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +K+         AD++     Q  E ++  + L+    E+    IG   A N+L    +
Sbjct: 258 ALKSF--------ADYK----AQILENNFTGLLLKVDDQELWTKLIGNFNAYNVLAIYAM 305

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L       ++ +S  +   GR  +Y  +  +    ++D  Y   P ++K  +  ++ 
Sbjct: 306 ADLLGLKTLEILRIISELNSVSGRF-QYVISEKEKITAIVD--YAHTPDALKNVLETINS 362

Query: 363 ISPHGEGRRIAVLG 376
           I    E   I V+G
Sbjct: 363 IRTRNE-ELITVVG 375


>gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila abortus S26/3]
 gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila abortus S26/3]
          Length = 483

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 170/431 (39%), Gaps = 72/431 (16%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL   +    G +    V  ++ DSR++   + F A +G H DG+DF   AV+ G
Sbjct: 1   MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFSHLAVENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLA--VAARL----RSKATIIAITGSV 117
           A         +A   S+  P   V  ++ + L +L   +AA+       K  ++ ITG+ 
Sbjct: 61  A---------IAVASSIYNPFLPVVQIISSDLPRLEADLAAKYYGHPSQKLCVVGITGTN 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLT------LARM------ 156
           GKTT   ++ +   +  K    IG+  + +G          P +      LA+M      
Sbjct: 112 GKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKMVKSHLS 171

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              ++     L ++ L  + F        + V+T +   HL   S  EE   AK ++F  
Sbjct: 172 AAVMEVSSIGLAVNRLANVDF-------DVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSM 224

Query: 217 LEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           L  +G   +N D      F E  +A+    GI+        ++AD+Q    +     +  
Sbjct: 225 LPSSGLAVVNNDLCDAAQFIEATQAQPITYGIE--------QHADYQASHVRFSPFGTDF 276

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRY- 330
           ++  +G++       IG H   N+L  + +    L  D+   I  ++      GR +   
Sbjct: 277 DLLYKGETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLEPIF 336

Query: 331 --RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
              C +       ID  Y   P ++      L  + P  +GR I V G  C  G+  QS 
Sbjct: 337 SGPCPI------YID--YAHTPDALDNVCQTLQALLPQ-DGRLIVVFG--CG-GDRDQSK 384

Query: 389 HIDLAEVLSLY 399
              +A+V+  Y
Sbjct: 385 RKIMAQVVEKY 395


>gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
 gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
          Length = 532

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 153/370 (41%), Gaps = 27/370 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S DS+ I P + + A  G    G +F   AV  GA  VV +    A +  L++PV 
Sbjct: 41  VTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAVPVL 100

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             +DV G   +L+  V     ++  +  +TG+ GKTTT  ++   L         IG+  
Sbjct: 101 VAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTGVIGTVQ 160

Query: 145 NHIG---VP--LTLARMP-----------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG   VP   T    P            DVD    E+    L   R  T  +R   A 
Sbjct: 161 ILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGR--TAGIRFKAAA 218

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              +   HL   +  E+   AKA++F     T    ++ DD     +  +  A G++ ++
Sbjct: 219 FLNLTQDHLDFHADFEDYFEAKAKLFT-PGYTERAVVDVDDEHGRRVVERCRANGVQ-VH 276

Query: 249 SFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306
           +F  K   AD+        ++ S   V            G+ G     N L  + ++++ 
Sbjct: 277 TFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAAIVLLAVT 336

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D++TAI  ++  H   GR +R +    Q F  ++D  Y   P ++  A+S L  ++  
Sbjct: 337 GIDLETAIAGVADVHGVPGRMERIQVP-GQQFLAVVD--YAHTPDAVLTALSALRPVAER 393

Query: 367 GEGRRIAVLG 376
           G GR   V+G
Sbjct: 394 GRGRLRVVVG 403


>gi|226323561|ref|ZP_03799079.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758]
 gi|225208245|gb|EEG90599.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758]
          Length = 173

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           ++ G   +ID+ YNANP SMK+++ VLS  +    GR +AV+GDM E+G+     H +  
Sbjct: 39  IDTGSLLIIDDCYNANPVSMKSSLDVLSTAT----GRTVAVMGDMYELGDKENELHYNTG 94

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +   I  +   G    H      A  +S  V Y +T       I++ +   D ++VK
Sbjct: 95  AHAAEIGIDVICCIGELSHHAYEGAKACAKSSAVLYFKTKQDFLGKIRNVVKKDDTILVK 154

Query: 451 SSNSCGFYRLINLL 464
           +S+   F  +I++L
Sbjct: 155 ASHGMEFPEIIDVL 168


>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 489

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 158/409 (38%), Gaps = 60/409 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85
           + GI   S+ +AP   F A KG  +DG  +I  AV+ GA  V+ +  D    +  +  P 
Sbjct: 23  ITGICAHSKQVAPGNLFIAKKGRTFDGSQYIAEAVETGAAAVLNDIFDPSLKVSQIIHPN 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V  V G L   A   R   +  ++ +TG+ GKTT   ++     S++     IG+   
Sbjct: 83  VAV--VEGKLVS-AFYHRPGEELLMVGVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEY 139

Query: 146 HIG---VPLTLARMPVDVDFGIFE------------------LGMSHLGEIRFLTHLVRP 184
            IG    P T     V  +  +                    L    + EI F       
Sbjct: 140 LIGDHAAPATHTTPDVATNHKLLREMVNQRSQAAVMEVTSHALHQGRVSEISF------- 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY--------DDSFFELLK 236
            + + T ++  HL     ++     K ++F  L+       NY        DD +FE + 
Sbjct: 193 DVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSLDPEAKKRKNYPKAAVVNIDDPWFEKII 252

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                     I ++G + +AD +  + +  +E     +  QGK   V    IG     N 
Sbjct: 253 DGCRV----PIITYGIANHADLRAEEIQLGAEGIVYTLVHQGKRYPVSLPLIGRFNVLNS 308

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+G    L   ++  + A+  F P  GR +       +G    +D  +   P ++K  
Sbjct: 309 LATIGCGISLGVPLNKVLDAVKSFPPVPGRLE--YVPNKRGLKLFVD--FAHTPDALKNV 364

Query: 357 ISVLSQISPHGEGRRIAVLG--------DMCEMGELSQSFHIDLAEVLS 397
           ++ L +++   +G+ I V G           +MG +++ F  DLA + S
Sbjct: 365 LNCLKELT---QGKLIVVFGCGGDRDPYKRSQMGRIAEEFS-DLAIITS 409


>gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
 gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
          Length = 555

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 20/226 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +P  
Sbjct: 84  VTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVAVLTDPSGAERAAAAGLPAL 143

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD    + +LA     R    +  I ITG+ GKTTT  ++   L +++ T   IG+  
Sbjct: 144 VVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTAYLVEGGLRTVRST-GLIGTVE 202

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             +G     +    P   D       M   G +  +   V  H             +AV 
Sbjct: 203 MRVGDERIKSERTTPEATDLQALFAVMRERG-VDSVVMEVSSHALVLGRVDGCVFDVAVF 261

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             ++P H+   SG+E+   AKA++F   E++    +N DD +   L
Sbjct: 262 NNLSPEHMEFHSGMEDYFQAKAQLFT-PERSRLGVVNLDDEYGRRL 306


>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parabacteroides distasonis
           ATCC 8503]
          Length = 486

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            +V         G  S  V  V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEETPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSRKLMLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168
           +L      +      + +  N+I             PLTL    ARM     ++   E+ 
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + R ++ L      + T +   HL     +E    AK + F+ L        N D
Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           D       +  KAK     ++T+  F GK   + F+             ++ + G+  EV
Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + H +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D
Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ + ++   G+GR I V+G
Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373


>gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 487

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 173/443 (39%), Gaps = 54/443 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   VA R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           PH +GR + + G  C  G+  +     +AEV+       VW++        D  PR    
Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT--------DDNPR---- 405

Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447
             SE    +F  I+   V  D V
Sbjct: 406 --SEAPTNIFDDIRPGFVTADKV 426


>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 499

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 147/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237
             IAV T +   HL      +E    K+ +F  L     TI      LN DD   E  K 
Sbjct: 202 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 260

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 261 ITSA----EVITYGIHNGADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D ++     ++ A  
Sbjct: 317 AAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVDYAH-----TLDALE 369

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS IS   +G+ I V G
Sbjct: 370 NVLSTISEFSKGKVITVFG 388


>gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 150/369 (40%), Gaps = 27/369 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVAS--IGSLS 82
           V G+++DSR +     F  + G    G +FI +A++ GAG ++ + +   +A   +    
Sbjct: 22  VTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDGAE 81

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + +   +D   A +  A        AT++ +TG+ GKT+           +    A IG+
Sbjct: 82  VTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANIGT 141

Query: 143 YN----------NHIGVPLTL-ARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
                       +    PLTL A +      GI    M   SH  + R L   VR   A 
Sbjct: 142 TGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDG-VRLVAAG 200

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T  +  HL      E   +AKA +F   L   G   +N DD     + A +H  G + +
Sbjct: 201 FTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAE-L 259

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G  K+A  +L   +  ++   M    +G + +   + +G   A N+L+ +G+V    
Sbjct: 260 LTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMATG 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A V   +  L       GR ++     N G    +D  Y   P ++K A+  L    PH 
Sbjct: 320 AQVGDLVPLLPRLATVRGRMQKVARREN-GATVFVD--YAHTPDALKTALRAL---RPHV 373

Query: 368 EGRRIAVLG 376
            GR + V G
Sbjct: 374 LGRLVVVFG 382


>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
 gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
          Length = 509

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 32/230 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82
           + GI  DSR I     F A+ G   DGHDFI  A+  GA +++    ++T    S   ++
Sbjct: 21  IKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDTGQYQSASDVT 80

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            I V G+   LG +         + K  II ITG+ GKTT+    +  L +I +  A IG
Sbjct: 81  FIQVEGIRKKLGIIAS-NYYGYPQDKIKIIGITGTNGKTTS----SFFLENILEKTARIG 135

Query: 142 SYNNHI---------GVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  N I           P +L  + +         D+ I E+  SH  EI  +  +++  
Sbjct: 136 TTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVS-SHALEIGRV-DMLKFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK----TGTIFLNYDDSF 231
            A+ T +   HL     +E   +AK +IF  L      TG+  +N DD +
Sbjct: 194 SAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEY 243


>gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 498

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T      G  
Sbjct: 17  IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDKHGIF 76

Query: 82  S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                   I  F + + +  L N+       R K  II ITG+ GKTT  +++    + +
Sbjct: 77  KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134

Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
               A +G+            NN    P+ +      V     EL    +     + H V
Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194

Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +    +IA+ T +   HL     +E+  SAK  +F    K   I LN DD +
Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLF-STHKVKKIILNADDQY 245


>gi|294620347|ref|ZP_06699659.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
 gi|291593418|gb|EFF24980.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
          Length = 427

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 46/297 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P          +F  FE  
Sbjct: 89  TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFE-- 137

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P  A++T I   H   ++ I+++ +A   +   ++K   IF  
Sbjct: 138 ---ACEYRRHFLAY--SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 190

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   LKA         IY +G ++N D Q R  ++ +  S  +V   G    V H 
Sbjct: 191 GDDAYLRKLKANV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 242

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +      N+L  LG++++      D+    + +  F    G  +R+   +     T++D
Sbjct: 243 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 298

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   ++
Sbjct: 299 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 354


>gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 497

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 142/338 (42%), Gaps = 46/338 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVD-- 89
           DSR + P + F  + G H+DGH FI+  ++ G AG ++              P  G+D  
Sbjct: 37  DSRLVKPGDVFACVCGRHFDGHSFIMEGLRLGVAGFMIER------------PTDGLDNW 84

Query: 90  ----DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               DV  A+  LA  +A     +  ++A+TG+ GK+T+  M+   LS+       IG+ 
Sbjct: 85  IQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKSTSSYMIRSVLSACGIKTGLIGTV 144

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGE------IRFLTH-LVRPHI-------AVI 189
             H G   T+A         +  L  S +        +   +H LV+  I       A+ 
Sbjct: 145 VYHDGDKETVADRTTPESTALQRLYESMIANGCGACVMECSSHGLVQGRISGSTYDGALF 204

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++P HL     +EE  +AK+ +F E L+    I +N  D + + L A+       +  
Sbjct: 205 TNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISVNGCDPWGQKLAAR-----FPSSL 259

Query: 249 SFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           ++G    AD +++  +    +  S  ++Q+ G+ +  V     G    +N L    +   
Sbjct: 260 TWGLGDGADVRVKADRLTMKAGGSDFDLQVDGQFLGRVALPMTGRFNVENALGAASLCIG 319

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           L    +  +K L       GR +R    L+ G   ++D
Sbjct: 320 LGCSPEAVVKGLETMPQVPGRMERIN--LSNGVTVIVD 355


>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
 gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
          Length = 486

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            +V         G  S  V  V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168
           +L      +      + +  N+I             PLTL    ARM     ++   E+ 
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + R ++ L      + T +   HL     +E    AK + F+ L        N D
Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           D       +  KAK     ++T+  F GK   + F+             ++ + G+  EV
Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + H +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D
Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ + ++   G+GR I V+G
Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373


>gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
          Length = 479

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 152/365 (41%), Gaps = 23/365 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F A+ G   DG  +I  A+ +GA  V+   D  A IG   +P+ 
Sbjct: 13  VAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTPDSEARIGG-RVPLV 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D    L ++A         T++A+TG+ GKT+  E      +   +  A +G+    
Sbjct: 72  MDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSASLGTLGLM 131

Query: 147 I-GVPLTLARMPVD------VDFGIFELGMSHL-------GEIRFLTHLVRPHIAVITTI 192
           + G P   +    D      V   + E G++H        G  +     VR   A  T +
Sbjct: 132 VDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDGVRIKAAAFTNL 191

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL     ++    AK  +FE  +E  GT  LN D + ++   + +   G + I S+G
Sbjct: 192 TRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRRGHR-ILSYG 250

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   A+ +L       +   +++ + G++  V    +G   A N L  LG+        D
Sbjct: 251 RRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGLAIATGTPDD 310

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A  ALS      GR +R    L  G    +D  Y   P +++   +VL+ I PH  G+ 
Sbjct: 311 QATAALSRLAGVRGRMERV-AVLANGAAIYVD--YAHTPDALE---TVLNAIRPHTTGKL 364

Query: 372 IAVLG 376
             V G
Sbjct: 365 WCVFG 369


>gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
 gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
          Length = 482

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 149/378 (39%), Gaps = 40/378 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           ++A+   L +    + + G+ GKTTT  M+ +A+        A +G      G       
Sbjct: 122 RMALLGELLAAGPSVGVIGTHGKTTTTSMIAVAMYGAGLDPSAFVGGNVPEFGGNARTGT 181

Query: 156 MPVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
            P   +    + G + LG E    T+    H+          L+ + S +EE  +  A  
Sbjct: 182 GPFVAEVDESDRGFALLGCETAVFTNAEDDHVG-------GELATYWSTVEEQHAGFARF 234

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + ++G +    D    + L +     G +   ++G+S  AD++    +     +  +
Sbjct: 235 ---VAQSGRVLFCADWPGLDTLCS-----GAREQLTYGQSAGADYRAVNVRPDESGTTFD 286

Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+ +G+ +      + G H   N L  L +  +   D D A +AL+ FH   G G+R+  
Sbjct: 287 VEFRGERLGEARVSLPGTHNVLNGLAALAVTHLYGGDFDRAARALADFH---GPGRRWEI 343

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--- 389
              +G   ++D+ Y  N   + +A+    Q      GRR+ V+          QS+    
Sbjct: 344 KGERGGALVVDD-YAHNATKVASAVQAARQT-----GRRVRVVFQPHRYLRTQQSWPRLA 397

Query: 390 ---IDLAEVLSL--YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442
              +D  EVL L     S   + G H   + D + +  H  VHY      +   ++ S  
Sbjct: 398 DALMDADEVLVLDIAAASETPIEGVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQ 457

Query: 443 DGDVVVVKSSNSCGFYRL 460
            GD++V   +     YR+
Sbjct: 458 PGDIIVTMGAGD--VYRI 473


>gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 486

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 35/294 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P + F A+ G    G+ FI  A+ +GA  V      VAS  +    V   +
Sbjct: 17  VRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFV------VASEPAGQDRVLHHE 70

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN--- 144
           +   AL +LA A     R    ++ +TG+ GKTTT  +L    +SI      +G+ N   
Sbjct: 71  NPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTVNYRW 130

Query: 145 ------------NHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                       + + +   LARM    V+    E     L + R     +  H+AV T 
Sbjct: 131 PGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAG--IDIHVAVFTG 188

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFELLKAKSHALGIKTIYS 249
           ++  HL   + IE+   AK ++F        +   +N DD     L  ++       +  
Sbjct: 189 LSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGEA-----PRVMG 243

Query: 250 FGKSKNADFQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G  KN   +L+     S  S   ME   QG+S  +     G H AQN+L   G
Sbjct: 244 YGLQKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQG 297


>gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
 gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
          Length = 487

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 147/385 (38%), Gaps = 44/385 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       VN I  DSR +   + F A+KG   DGH +I  A+  GA 
Sbjct: 4   LKDILYGVGIVAVNGTTDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNAGAN 63

Query: 67  LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++  T   ++V  I  + +        + A N     ++      ++ +TG+ GKTT  
Sbjct: 64  AIICETMPVNLVNGITYVQVKNGNAALAIMASNFYGTPSK---NLKLVGVTGTNGKTTIS 120

Query: 124 EML---------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFEL 167
            +L               TI +    K      +  + I +  +LA M    V+F   E+
Sbjct: 121 SLLYQLFKKAGYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFCFMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + +  LV    A+ T ++  HL       E    K  +F+GL KT     N 
Sbjct: 181 S-SHGIHQKRIEGLVFEG-AIFTNLSHDHLDYHKTFAEYRDTKKLLFDGLPKTAWALTNI 238

Query: 228 DDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           DD       +  KAK     +KT         ADF+     Q  E  +    L+    E+
Sbjct: 239 DDKNGAVMLQNTKAKKQTYALKTY--------ADFR----AQILENQFSGQLLKIDDNEL 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A NML       +L  +    ++ LS     +GR + Y    N     ++D
Sbjct: 287 WSKLIGDFNAYNMLAIYATAQLLGLEKMEILRLLSELENVDGRFQYYISGKN--ITAIVD 344

Query: 344 ESYNANPASMKAAISVLSQISPHGE 368
             Y   P ++K  ++ ++ +    E
Sbjct: 345 --YAHTPDALKNVLNTINALRTGNE 367


>gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 493

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F  +   +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
 gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
          Length = 486

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMV 75
            P   V G+++DSR + P   F A+ G   PH    DGHDFI  A+ KGA  VV   ++ 
Sbjct: 14  APPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIPEALAKGAIAVVGEREL- 72

Query: 76  ASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
               SL +P   V D   AL  LA         K  ++ ITGS GK+TT  +L   L + 
Sbjct: 73  ----SLPVPYLRVGDAREALAHLARHFFGEPDRKLALLGITGSKGKSTTASLLHHLLQAG 128

Query: 134 KKTYACIGSYNNHIG 148
           +K  A + +    +G
Sbjct: 129 EKPAALLSTVGLRLG 143


>gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa]
          Length = 487

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 146/376 (38%), Gaps = 44/376 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DS  + P + F  + G H DG   I  A+ KGA  V    +    +     P+
Sbjct: 17  LIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDAPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                IAV T ++  HL     +E  A+AKA++F   +    + +N DD F   L  +  
Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRV-INLDDDFGRRLAGEEQ 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T YS   S +A    R+    +  +     +  K   +    +G     N+L  +
Sbjct: 247 DSELIT-YSLTDS-SAFLYCREASPTASPTARRSSIAAKQGLLRSPLLGRFNLSNLLAAV 304

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G +  L   +   ++ L       GR +R    L  G   L+   Y   P +++    VL
Sbjct: 305 GALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGGKPLVVVDYAHTPDALE---KVL 357

Query: 361 SQISPHGEGRRIAVLG 376
             + PH   R + + G
Sbjct: 358 EALRPHAAARLLCLFG 373


>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 485

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 44/361 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S+ I     FFAIKG + DGH FI  A++K A ++V     +  I    +   
Sbjct: 24  IENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKKARVIVCQ--QLPEILPKEVTFL 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D   A+ ++A         K  ++ +TG+ GKTT   +L     + K     I +  
Sbjct: 82  KVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNGKTTIATLLYHLFRNTKHKVGLISTIA 141

Query: 143 -YNNHIGVP--------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI------- 186
            Y N   +         +TL R        + E G++H   +   +H +  H        
Sbjct: 142 IYINEQKIDTKNTTPDVITLNRRM----HQMVEEGVTHCF-MEVSSHGIAMHRIEGLSFA 196

Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALG 243
             + T +   HL       E  + K + F+ L+K      N DD    F L   ++H   
Sbjct: 197 GGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTLKKDAFALTNIDDKNGNFMLQNTQAHK-- 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               Y++     ADF+        E ++  + L+    E+  H IG   A N+L      
Sbjct: 255 ----YNYALRTYADFK----ANILENAFSGLVLRIGQQEIWTHLIGQFNAYNLLAIYATA 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D +   K +S   P  G   R++  ++ G  T+I + Y   P +++  +  +  I
Sbjct: 307 VLLGMDKEEVAKQISELKPVSG---RFQYFISAGNITVIVD-YAHTPDALQNVLETIKSI 362

Query: 364 S 364
            
Sbjct: 363 K 363


>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 491

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 156/381 (40%), Gaps = 56/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FF I G   DGHDF   A++KG   +V   D+     ++++PV 
Sbjct: 26  ITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVAIVAEKDL-----NVAVPVI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V     A+  ++ A      SK  +I +TG+ GKTTT  ++   L   +K    IG+  
Sbjct: 81  KVTSSKRAMAIISSAFYDYPSSKLHLIGVTGTNGKTTTTHLIEKILRDAEKNTGIIGTMY 140

Query: 144 ----------NNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHL 181
                     NN     L L +            + ++V     ELG  H       TH 
Sbjct: 141 MKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNVVTMEVSSHALELGRVH------GTHF 194

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTI-FLNYDDSFFELL 235
              ++AV T ++  HL     +E  A AK  +F  L     +K+  +  LN DD  F+LL
Sbjct: 195 ---NVAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDKSQPVAVLNRDDDTFDLL 251

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  + A     I S+G   NAD +  K +   E +   + +  +S  V     G     N
Sbjct: 252 ETMTAA----PIISYGIKGNADLKASKIQLHEEGTSFNMSISNESCSVSMKMAGTFSVYN 307

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L       +    +    ++LS      GR +  R  L + F  ++D  Y   P S+K 
Sbjct: 308 ALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFE--RVELEEDFHVIVD--YAHTPDSLK- 362

Query: 356 AISVLSQISPHGEGRRIAVLG 376
             +VL  I    +G+   V+G
Sbjct: 363 --NVLETIKEFAKGKVSVVVG 381


>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
 gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
          Length = 486

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            +V         G  S  V  V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168
           +L      +      + +  N+I             PLTL    ARM     ++   E+ 
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + R ++ L      + T +   HL     +E    AK + F+ L        N D
Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           D       +  KAK     ++T+  F GK   + F+             ++ + G+  EV
Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + H +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D
Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ + ++   G+GR I V+G
Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373


>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum F str. 230613]
          Length = 483

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 143/368 (38%), Gaps = 32/368 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  ++            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P  L L ++  D     VD+ + E+    L   R   + V    A+
Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR--VYGVEFKEAI 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K  Y
Sbjct: 200 FTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKITY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G  KN D +       S     +   + +   +  +  G +   N L ++G   +   
Sbjct: 255 --GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLEGI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            + T  +AL       GR +      N G+  ++D  Y   P  ++   ++L+      +
Sbjct: 313 PLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREFTK 367

Query: 369 GRRIAVLG 376
           GR I+V G
Sbjct: 368 GRLISVYG 375


>gi|69248544|ref|ZP_00604765.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257878422|ref|ZP_05658075.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257882840|ref|ZP_05662493.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257889379|ref|ZP_05669032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257894392|ref|ZP_05674045.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|258616059|ref|ZP_05713829.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium DO]
 gi|260560011|ref|ZP_05832189.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|261207887|ref|ZP_05922572.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289566955|ref|ZP_06447359.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|293559957|ref|ZP_06676465.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|293569017|ref|ZP_06680330.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|294623289|ref|ZP_06702154.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|314937785|ref|ZP_07845102.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|314941669|ref|ZP_07848549.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|314948916|ref|ZP_07852285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
 gi|314950965|ref|ZP_07854032.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|314992967|ref|ZP_07858363.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|314996414|ref|ZP_07861457.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|68194390|gb|EAN08897.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257812650|gb|EEV41408.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257818498|gb|EEV45826.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257825739|gb|EEV52365.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257830771|gb|EEV57378.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|260073846|gb|EEW62170.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|260078270|gb|EEW65976.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289161254|gb|EFD09150.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|291588450|gb|EFF20285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|291597317|gb|EFF28503.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|291606045|gb|EFF35471.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|313589396|gb|EFR68241.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|313592490|gb|EFR71335.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|313596820|gb|EFR75665.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|313599560|gb|EFR78403.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|313642816|gb|EFS07396.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|313644706|gb|EFS09286.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
          Length = 444

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P          +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   ++ I+++ +A   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   LKA         IY +G ++N D Q R  ++ +  S  +V   G    V H 
Sbjct: 208 GDDAYLRKLKANV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +      N+L  LG++++      D+    + +  F    G  +R+   +     T++D
Sbjct: 260 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   ++
Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371


>gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 515

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 35/261 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +      + +  +P  
Sbjct: 35  VTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVAVLTDPSGAERVAATGLPAL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKT-------- 136
            VDD    + +LAV         +  I ITG+ GKTTT  ++   L + + T        
Sbjct: 95  VVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLKTARGTDEGGGGRR 154

Query: 137 YACIGSYNNHIGVPLTLAR--MPVDVDF----------GIFELGM---SH---LGEIRFL 178
              IG+    IG     +    P   D           G   + M   SH   LG +   
Sbjct: 155 VGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSHALVLGRVDGC 214

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                  IAV T ++P H+   S +E+   AKA++F   E++    +N DD +   L AK
Sbjct: 215 VF----DIAVFTNLSPEHMEFHSDMEDYFRAKAQLFT-PERSRLGVVNVDDEYGRRL-AK 268

Query: 239 SHALGIKTIYSFGKSKNADFQ 259
              + + T YS     +AD++
Sbjct: 269 EAGVPVVT-YSAEGHPDADWR 288


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 157/374 (41%), Gaps = 41/374 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GI  +S+ IAP   F A KG  +DG  +I  A+  GA  +V +    +      I   
Sbjct: 23  ISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHGATAIVTDIYDPSFKEITQIICK 82

Query: 87  GVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V +V G  +  A   ++ S+   I+ ITG+ GKTTT  ++   L  +      IG+   
Sbjct: 83  NVAEVEGRFS--ANFYQMPSQELFIVGITGTNGKTTTSFLVKYLLEQLNLPCGLIGTIEY 140

Query: 146 HIG-VPLTLARMPVDV---------------DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +G      +    DV                  + E+  SH  + + + H +   IA+ 
Sbjct: 141 ILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEV-TSHALDQKRVEH-IDYDIAIY 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLE-----KTGTIFLNYDDSFFE-LLKAKSHALG 243
           T +   HL     +E  A+AK ++F  L+     K+  I  N D  +FE +LK      G
Sbjct: 199 TNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQIIANLDCPWFETILK------G 252

Query: 244 IKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           IKT I++FG    AD +          + +++  QG+S       IG     N L  + +
Sbjct: 253 IKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHYQGRSYSTFFPLIGRFNIYNCLAAIAV 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  ++  I     F P  GR +  +  L+   F  +D ++  +  ++  A+  LS+
Sbjct: 313 GLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLF--VDFAHTED--ALYKALECLSE 368

Query: 363 ISPHGEGRRIAVLG 376
           +    +G+ I V G
Sbjct: 369 LK---KGKIITVFG 379


>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_7]
          Length = 486

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            +V         G  S  V  V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168
           +L      +      + +  N+I             PLTL    ARM     ++   E+ 
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + R ++ L      + T +   HL     +E    AK + F+ L        N D
Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           D       +  KAK     ++T+  F GK   + F+             ++ + G+  EV
Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + H +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D
Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ + ++   G+GR I V+G
Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373


>gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 489

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 150/381 (39%), Gaps = 51/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR I P   F A+ G   DG  FI  AVQ GA  V+  TD     G  + P+ 
Sbjct: 23  ISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAAVLAPTDTQWPTGVPTCPLI 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI--ALSSIKK----TYACI 140
              +   AL  +A          + AITG+ GKT+T + +    AL   K     T    
Sbjct: 83  LAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFIRQIWALQGFKAAAIGTLGLT 142

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFEL---GMSHL-----------GEIRFLTHLVRPHI 186
           G+ +  I  P      PV +  G+  L   G +H+           G +  L HL     
Sbjct: 143 GAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEASSHGLEQGRLDGL-HLA---A 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   HL     IE   +AK ++F+ L     I     D   + L+A         
Sbjct: 199 AGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADMDAQTLQA--------- 249

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG---------IGYHMAQNM 296
           I +    +N   +L   +  + +      L  G+ + + H+G          G   A N+
Sbjct: 250 IRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPGRFQADNV 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKA 355
           L+ + + +   A++   +  L   H K  RG+  R   L  G    +D ++  +     A
Sbjct: 310 LLAVALAAQDDAEIADILPLLP--HLKGVRGRLERATVLPNGACAYVDYAHTPD-----A 362

Query: 356 AISVLSQISPHGEGRRIAVLG 376
              +L+ + PH  G+ + VLG
Sbjct: 363 LARLLASLRPHARGKLVVVLG 383


>gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 494

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 145/371 (39%), Gaps = 39/371 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I +DSR + P   F AI+G   DG  FI  AV +GA  +V   D       L+IP  G+ 
Sbjct: 25  IQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPPLTIPCIGIR 84

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+   L++LA     +  +K  ++ ITG+ GK+TT  ++    + +      +G+  N +
Sbjct: 85  DLPARLSELAGYFYEQPANKLDLVGITGTNGKSTTALLVANWRTLLGGKAGVMGTIGNGL 144

Query: 148 GVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIA 193
              L  A       + V  +    +   + L  +   +H +  H         AV T ++
Sbjct: 145 FGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAALPFAAAVFTNLS 204

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252
             HL     +E   +AK E+ + +++   + +N DD    + L A   A+          
Sbjct: 205 RDHLDYHGTMEAYGAAKEELLKLVDEPCAV-INADDQLGRQWLAAYPGAVAFSVNGPIAD 263

Query: 253 -------SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  +++  F  + ++     SW    L    +       G     N+L  +G + +
Sbjct: 264 HPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLL-------GRFNVSNVLAAMGAMLV 316

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +  +       P  G   R  C    G   L    Y   P +++ A+  L     
Sbjct: 317 LGYDFNVLLATAPQLQPVTG---RMEC-FGGGNAPLAVVDYAHTPDALEKALQALRV--- 369

Query: 366 HGEGRRIAVLG 376
           H EG+   ++G
Sbjct: 370 HCEGQLWCLVG 380


>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
 gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
          Length = 486

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            +V         G  S  V  V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168
           +L      +      + +  N+I             PLTL    ARM     ++   E+ 
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + R ++ L      + T +   HL     +E    AK + F+ L        N D
Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           D       +  KAK     ++T+  F GK   + F+             ++ + G+  EV
Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + H +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D
Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ + ++   G+GR I V+G
Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373


>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
 gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
          Length = 486

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            +V         G  S  V  V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168
           +L      +      + +  N+I             PLTL    ARM     ++   E+ 
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  + R ++ L      + T +   HL     +E    AK + F+ L        N D
Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238

Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           D       +  KAK     ++T+  F GK   + F+             ++ + G+  EV
Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + H +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D
Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++   ++ + ++   G+GR I V+G
Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373


>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 454

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----LTLARMPVDVD 161
           ++A I AITGS GK+T    +T  L  + K      +   ++G P    L  A  P + +
Sbjct: 107 ARAPIAAITGSNGKST----VTTLLGEMAKAAGRRVAVGGNLGTPALDLLPEAGAP-EPE 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       H +RP +A I  ++P HL     +E   +AKA IF  + +  
Sbjct: 162 LYVLELSSFQL----HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGD 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQ 277
           T+ LN +D   + L AK+ A G++ I  FG +      AD     W   +     ++ L 
Sbjct: 218 TLVLNGEDPALQSLPAKAPA-GVE-IRRFGHTPQLDAWADDLALHWPSAAPMPLADIHLP 275

Query: 278 GK 279
           GK
Sbjct: 276 GK 277


>gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 494

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYSVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132]
 gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans ND132]
          Length = 507

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 95/233 (40%), Gaps = 24/233 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVF 86
           +  DSR I   E F A+ G    G D+I +A+  GA  +V      D+VA +        
Sbjct: 33  VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VD+   AL +LA A    +     ++AITG+ GKTTT  ++   L+S       +G+ N
Sbjct: 93  YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTVN 152

Query: 145 NH-----IGVPLTLARM-----------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                  +  PLT                 DVD  + E+    L + R     +    AV
Sbjct: 153 YRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAG--LDFDAAV 210

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSH 240
            T +   HL     +E    AKA++F    +      LNYDD +   L A+  
Sbjct: 211 FTNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQ 263


>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 483

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 144/370 (38%), Gaps = 36/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  ++            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186
           N+IG          P  L L ++  D     VD+ + E+    L    +L  +  V    
Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K 
Sbjct: 198 AIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKI 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y  G  KN D +       S     +   + +   +  +  G +   N L ++G   + 
Sbjct: 253 TY--GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLE 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              + T  +AL       GR +      N G+  ++D  Y   P  ++   ++L+     
Sbjct: 311 GIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREF 365

Query: 367 GEGRRIAVLG 376
            +GR I+V G
Sbjct: 366 TKGRLISVYG 375


>gi|157151093|ref|YP_001449974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|189082919|sp|A8AW14|MURD_STRGC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157075887|gb|ABV10570.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 450

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQSACGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL      EE A+AK  I + +   
Sbjct: 162 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            ++++   +  +
Sbjct: 218 DYLVLNFNQDWAKGMASQTQA----TVVPFSTTEKVD-----------GAYLDGDVLTFR 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ ++V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 263 GEAIIKVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 307


>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 483

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 144/370 (38%), Gaps = 36/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  ++            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186
           N+IG          P  L L ++  D     VD+ + E+    L    +L  +  V    
Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K 
Sbjct: 198 AIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKI 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y  G  KN D +       S     +   + +   +  +  G +   N L ++G   + 
Sbjct: 253 TY--GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLE 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              + T  +AL       GR +      N G+  ++D  Y   P  ++   ++L+     
Sbjct: 311 GIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREF 365

Query: 367 GEGRRIAVLG 376
            +GR I+V G
Sbjct: 366 TKGRLISVYG 375


>gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 10329]
          Length = 493

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 151/372 (40%), Gaps = 33/372 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81
            V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++    
Sbjct: 24  LVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIID 83

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A +G
Sbjct: 84  DIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMG 143

Query: 142 ---------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                          +  N + +  TLA +  +       L +S  G I+     +    
Sbjct: 144 TTGNGFLDDLKEAANTTGNAVEIQHTLASL-AEQQAQYTALEVSSHGLIQGRVKSLSFAA 202

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T ++  HL     +EE A+AK  +F    +     +N DD   E+  A +  L    
Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCDQAIINVDD---EVGAAWAKQLTNAI 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVS 304
             S   +   +  L   +    +S + ++  G+  E   H   IG   A N+++    + 
Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    +   +   P  GR + ++ A N+    +    Y   P +++ A+  L    
Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQ-AENRAKVVV---DYAHTPDALEKALQAL---R 371

Query: 365 PHGEGRRIAVLG 376
            H +G+  A+ G
Sbjct: 372 VHCDGQLWAIFG 383


>gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 122

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 9/118 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGK 119
           A   +V+          S P+  V D L AL+ +A +  +R+    A +IA+TGSVGK
Sbjct: 64  AVAAIVSEGKYK-----SFPLMIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGK 115


>gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. AR 15-3]
          Length = 484

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 158/380 (41%), Gaps = 54/380 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR + P   F A+KG   DG +++  A+++GA +++ + + V    +LSIPV 
Sbjct: 21  ITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVIITDNNFV--FENLSIPVI 78

Query: 87  GVDDVLGALNKLAVAAR--LRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V +V    ++LA+AA     S+  I +A+TG+ GKT+    +      +    A IG+ 
Sbjct: 79  HVSEV---RHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIGTV 135

Query: 144 ------NNHIGV-----PLTLARMPVDV--DFGI----FELGMSHLGEIRFL-THLVRPH 185
                  + IG      P+ L R+  ++  D G+    FE     + + R    HL    
Sbjct: 136 GVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRIDGVHLA--- 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLN--YDDSFFELLKAKSH 240
            A  T +   H+     IE+   AK  +F  +   +    IF +  Y     ++++ ++H
Sbjct: 193 AAAFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVR-QAH 251

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + + + G++      L + +    +  +E ++            G     N LM  
Sbjct: 252 ----RKVLTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAA 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAA 356
           G+     A  D   ++L       GR    GK        G    +D  Y   P +++  
Sbjct: 307 GLAIATNAPPDMVFRSLEKLQGPPGRLELVGK-----TKDGAPVYVD--YAHKPEALE-- 357

Query: 357 ISVLSQISPHGEGRRIAVLG 376
             VL  + P  +GR I V G
Sbjct: 358 -QVLLSVRPFTQGRLILVFG 376


>gi|302868924|ref|YP_003837561.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC
           27029]
 gi|302571783|gb|ADL47985.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC
           27029]
          Length = 493

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 35/287 (12%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH-IGV 149
           A+AA +  + T+ A+ G+ GKT+T  M+T+ L          I    + +GS  +H  G 
Sbjct: 109 ALAAAMTGRRTV-AVAGTHGKTSTTSMVTMVLQQAGTDPSFVIGGEISEVGSGAHHGTGE 167

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              +     D  F I+                 RP ++++T I   HL+ +  +  + +A
Sbjct: 168 HFVVEADESDRSFLIY-----------------RPFVSIVTNIEADHLNTYGDLATLEAA 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            AE     +  G +    DD+    L     A G + ++++G+S +AD ++ +    +  
Sbjct: 211 FAEFARLTDPAGFVITCADDAGGRRLAETLRAEG-RRVWTYGESADADLRMSEVVSSAHG 269

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              + +++G+ +  +   + G HMA N    +    +L   V  A  AL  F     R +
Sbjct: 270 VRFQAEVEGRPLGEIRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGTFPGVRRRFE 329

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           R   A       L+ + Y  +P SM  A+  L +++  G+GR I V 
Sbjct: 330 RKGAADG----VLVYDEYAYHPTSMTLALQTLREVA--GDGRLIVVF 370


>gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 482

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 156/374 (41%), Gaps = 45/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G +ID R +AP   F A  G  ++G DFI  AV+ GA  VV   + V         V 
Sbjct: 21  VTGFAIDHRKVAPGTVFGAFPGTRFNGEDFIADAVKAGAVAVVARPEAV---------VE 71

Query: 87  GVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G   V  A  + A AA           T++A+TG+ GKT+T EM         ++ A IG
Sbjct: 72  GAVHVADAEPRRAFAALAAQFFQPVPETVVAVTGTNGKTSTVEMTRQIWRMAGRSAASIG 131

Query: 142 SY-----NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRP 184
           +      +  +   LT    P  V F     G+   G++H+       G  +F    +R 
Sbjct: 132 TLGVTTADESVSTGLT---TPDIVTFLSNMTGLAREGVTHVAYEASSHGLSQFRNEGLRV 188

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALG 243
                T ++  HL     +E+  +AK  +F+ +   G + + + DD +           G
Sbjct: 189 IAGAFTNLSRDHLDYHPTMEDYFAAKMRLFDHVVDDGGVAVVWMDDEWSGRAVEHVRRRG 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +    + +      R   Q  +   +EV   G   ++    IG + A N L++ G+ 
Sbjct: 249 LRLLSVGEQGETIRLLARTPTQLGQ--VLEVAFDGARRKISLPLIGAYQAANALVSAGLA 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQ 362
                D      AL+   P   RG+  R A+N+ G    +D  Y   P +++AAI+ L  
Sbjct: 307 IASGIDAGQVFDALARLQPV--RGRLERAAINRAGAPVYVD--YAHTPDAIEAAIAAL-- 360

Query: 363 ISPHGEGRRIAVLG 376
             PH +GR I V G
Sbjct: 361 -RPHVKGRLITVFG 373


>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
 gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
          Length = 499

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 147/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237
             IAV T +   HL      +E    K+ +F  L     TI      LN DD   E  K 
Sbjct: 202 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 260

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 261 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGQIEVSLNLVGRFNVYNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++   
Sbjct: 317 AAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 369

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS IS   +G+ I V G
Sbjct: 370 NVLSTISEFSKGKVITVFG 388


>gi|325690202|gb|EGD32206.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK115]
          Length = 459

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+  AL++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQN----GLLSGNIGYPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL     +E  A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            +++E   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L  + +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALAMIAVAKLRGIDNQTIKEVLSAF 316


>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
 gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
          Length = 486

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 150/378 (39%), Gaps = 32/378 (8%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +L++A Q   +       V+ ++ DSR IAP + FFA+ G   DGH +I  AV  GA  
Sbjct: 5   QELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTAGAAA 64

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML- 126
           VV          S+   V    +   A    A       +  ++ ITG+ GKTTT  +L 
Sbjct: 65  VVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNGKTTTVTLLY 124

Query: 127 --------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSH 171
                         T+      +      +  + I +   +ARM     ++   E+    
Sbjct: 125 DLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEYCFMEVSSHA 184

Query: 172 LGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           + + R    H       + + I   HL       E   AK   F+ L K     +N DD 
Sbjct: 185 IVQERIRGLHFTG---GIFSNITHDHLDYHKTFAEYIRAKKLFFDNLPKEAFALINIDDR 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A    T+ +      ADF+ +  +  +    ME+++ G+  EV  H +G 
Sbjct: 242 NGRVMVQNTRA----TVKTLSLQSMADFRCKILE--THPDGMELRIDGR--EVWVHFLGR 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L       +L AD +  ++ +S  HP  GR +  R A   G   ++D  Y   P
Sbjct: 294 FNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAA--DGTTAIVD--YAHTP 349

Query: 351 ASMKAAISVLSQISPHGE 368
            +++  +  + +I   G+
Sbjct: 350 DALEKVLQTVEEIRRPGQ 367


>gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
 gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
          Length = 495

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 39/231 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           +  + +DSR I P + F A+ G   DG  FI  A+ +GA LV+   D     G++S    
Sbjct: 27  IQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALARGANLVLAQADEQRPHGTVSDIDS 86

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137
              I +  +D+ L AL     A R  +  T  +IA+TG+ GKTT  +++T  L  + +  
Sbjct: 87  KPIIYLASLDEHLSAL-----AGRFYADHTNRVIAVTGTNGKTTISQLITQWLELMGERA 141

Query: 138 ACIGS----YNNHIGVPLTLARMPVDVDFGIFELG-----------MSH---LGEIRFLT 179
           A +G+    + N +   L      ++V   + +L             SH    G I+ L 
Sbjct: 142 AVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARYTAMEVSSHGLVQGRIKAL- 200

Query: 180 HLVRPHIA-VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               P IA V + ++  HL     ++E A AK  +F   +    I LN DD
Sbjct: 201 ----PFIAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTEHDCQQAI-LNVDD 246


>gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
 gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
          Length = 505

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 168/407 (41%), Gaps = 61/407 (14%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G S+ +     ++G++  S+ + P+  FFA+ G  +DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKYVKG-SLNLE----ISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNV 68

Query: 68  VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +V + D+     ++  + +  F +   +   + +      + K  +I +TG+ GK++   
Sbjct: 69  IVCSRDLDFYSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127

Query: 125 MLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-FLTHL 181
            + + L    IK  +     +++  G   +L + P       +        EI  FL+++
Sbjct: 128 YIYLLLKKRGIKVGFVSTVFFDDGSG---SLIKNP-------YRQSTPESTEIHAFLSNM 177

Query: 182 VRPHI--------------------------AVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           V+  +                          AV T I   HL     I    + K  +F+
Sbjct: 178 VKNGVQYAVLESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQ 237

Query: 216 GL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +  G   +N DD +    K   +A+     YS  K+  ADF +    + ++ +  E 
Sbjct: 238 SVSDDAGFGVINLDDVYSSDFK---NAIKKSFTYSL-KNSQADFFVSFIDEKTDSTRFEF 293

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             +G       + +G    +N++  L +VS +L  D+   +  L      +GR       
Sbjct: 294 YYKGIKYFANVNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMD--SIN 351

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           L Q F  +ID  Y   P +      +  + + +   R I+V G   E
Sbjct: 352 LGQNFSVIID--YAHTPGAFSKLFPIFKRFAIN---RLISVFGSAGE 393


>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
 gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
          Length = 520

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 150/370 (40%), Gaps = 38/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           + G++IDSR I     F A++G   DGH FI  AV +GA + V+  DM A +      + 
Sbjct: 59  IKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQGA-VAVLLEDMPAVMDEKVTYVQ 117

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   ++  G +  +      R +  ++ +TG+ GKTT   +L             + +  
Sbjct: 118 VASTEEDAGKVATVFYGNPSR-RLKLVGVTGTNGKTTVATLLYNMFRKFGYKTGLLSTVC 176

Query: 145 NHIG---VPLT------------LARMPVDVDFGI---FELGMSHLGEIRFLTHLVRPHI 186
           N+I    VP              L+RM   VD G    F    SH    R ++ L     
Sbjct: 177 NYIDDKEVPADHTTPDPIELNCLLSRM---VDAGCEYAFMECSSHAIHQRRISGLEFAG- 232

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            + T +   HL      E   +AK   F+GL K      N DD    L   ++    +KT
Sbjct: 233 GIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNADDK-NGLFMVQNTKAAVKT 291

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            YS    + ADF+ +  +   E  ++E+  +GK  EV    IG     N+L   G   +L
Sbjct: 292 -YSI--KRMADFRAKILECHFEGMYLEI--EGK--EVGVQFIGKFNVSNLLAVYGAAILL 344

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  + A+S      GR +  +    +GF  ++D  Y   P ++   ++ +  +   
Sbjct: 345 GRQPEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YAHTPDALANVLAAIHDVLDT 400

Query: 367 GEGRRIAVLG 376
             G  I V G
Sbjct: 401 KGGHVITVCG 410


>gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alistipes sp. HGB5]
          Length = 485

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 165/399 (41%), Gaps = 38/399 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSI 83
           V G+  DSR++ P + FFA++G   DGHDFI  AV KGA  VV         A +  +++
Sbjct: 24  VAGLVYDSRAVGPGDCFFAVRGTQNDGHDFIPAAVAKGAAAVVCERLPEQTAADVVYVAV 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           P    D      +  A      S+A  ++ ITG+ GKTTT  +L   + ++      I +
Sbjct: 84  P----DAAGALADMAAAFYDHPSRALKLVGITGTNGKTTTVTLLYDLVRALGHKAGLIST 139

Query: 143 YNNHIGVPLTLA--RMPVDVDFGIFELGMSHLG-EIRFL---THLVRP------HIA--V 188
               +G     A    P  V        M+  G E  F+   +H +        H A  +
Sbjct: 140 VVYKVGERTVGATHTTPDPVRLNAMMREMADEGCEYCFMECSSHAIVQERTRGLHFAGGI 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + I   HL       E   AK   F+ L K      N DD    ++   + A     I+
Sbjct: 200 FSNITHDHLDYHKTFAEYIRAKKLFFDSLSKEAFALTNADDKNGRVMVQNTAA----AIH 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     ADF+ +  +   +   + +  Q    EV    +G   A N+L   G   +L  
Sbjct: 256 TYSLRSMADFRCKIVEMHPDGMLLRIDGQ----EVWVGLVGRFNAYNLLAVYGAAVLLGF 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D    ++A S+ HP  GR +  R A   G   ++D  Y   P +++  I  + +I    +
Sbjct: 312 DRGETLRAASMLHPVSGRFELVRSA--NGVTAVVD--YAHTPDALENVIRTIEEIRTPAQ 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            + I V G  C  G+  ++   ++A++   Y  + V+ S
Sbjct: 368 -KLIVVCG--CG-GDRDRTKRPEMAQIAVRYADTAVFTS 402


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 146/360 (40%), Gaps = 35/360 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q   + + IDSR +   + F A+KG + DGH FI  AV  GA  +V  +    +   +++
Sbjct: 24  QSSFDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGPDIAL 83

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V D   AL +LA  + +   SK  + A+TG+ GKTT   ++   L +       IG
Sbjct: 84  ----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFIG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFEL-------GMSHLGEIRFLTHLVRP--------HI 186
           +     G     A         ++EL       G SH   +   +H +           +
Sbjct: 140 TTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHC-SMELSSHAIDQDRIRMRDVDV 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL   S  E   +AK ++F+ L       +N DD   + + A +      +
Sbjct: 199 ALFTNLTRDHLDYHSTFELYFAAKKKLFDELPDGAVAVVNVDDPRGKGIAADTTG----S 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG   ++D       + +E S +++ + G          G + A N+         L
Sbjct: 255 VITFGSDDHSDVSFS--IEGNELSGLDLTIDGHRRRF--QLAGTYNASNLAAAYAASRAL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-SVLSQISP 365
                 +I ALS   P EGR +R +     G   ++D  Y   P ++K  + + L  + P
Sbjct: 311 GLSALESIDALSSSPPVEGRFERMQ--FEGGTMVIVD--YAHTPDALKNVLEATLESMRP 366


>gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 494

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLSANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F     ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFVTPFGTYQVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
          Length = 494

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLSANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F     ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFVTPFGTYQVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 499

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 147/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237
             IAV T +   HL      +E    K+ +F  L     TI      LN DD   E  K 
Sbjct: 202 -KIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLSTIDKKIAVLNADDPSVEYFKK 260

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 261 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNVYNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++   
Sbjct: 317 AAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 369

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS IS   +G+ I V G
Sbjct: 370 NVLSTISEFSKGKVITVFG 388


>gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 494

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F  +   +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 1058

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 153/374 (40%), Gaps = 45/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G ++DSR +     F A  G   +G DFI  A+  GA  +V   +         + + 
Sbjct: 598 VLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 648

Query: 87  GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G   ++    +LA   +AAR  +     + A+TG+ GKT+  E+     +      A IG
Sbjct: 649 GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTIAGHKAASIG 708

Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                    SY+  +  P           LAR   D+   IFE     L + R  +   +
Sbjct: 709 TLGVITAKNSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 764

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                 T+ +  HL     +E   +AK  +F E +   GT  +  DD     + A     
Sbjct: 765 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIAHVQKR 824

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+K I   G+   A  +L   +  S+   + + +QG+S ++    IG +   N L+  G+
Sbjct: 825 GLKLI-DIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGL 882

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V     D+   + AL++  P  GR +R   + N G    +D  Y   P  ++AAI  L  
Sbjct: 883 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 937

Query: 363 ISPHGEGRRIAVLG 376
             PH EGR   V G
Sbjct: 938 -RPHTEGRLWVVFG 950


>gi|148926962|ref|ZP_01810639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845046|gb|EDK22143.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 389

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 56  KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIIADIN 115

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           A +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E
Sbjct: 116 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLE 174


>gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 494

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQPLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   I LN DDSF E L+  + 
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFSEYLRTVTP 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 254 Y----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
 gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 141/375 (37%), Gaps = 49/375 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ DSR +     F A+ G   DGHD+I  A+  GA  V+   +++  +    +   
Sbjct: 23  IEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAGASAVLC--EVLPKMLEEEVTYI 80

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V++   +   + +AA         + T++ +TG+ GKT+   +L      +      I 
Sbjct: 81  QVEN---SAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSVATLLFKLFRKLGYKCGLIS 137

Query: 142 SYNNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV---------- 188
           +  N I    +P T    P  +        M   G   F+   V  H  V          
Sbjct: 138 TVQNQIEDEIIPATHT-TPDSITLNALLHEMHQKG-CAFVFMEVSSHSVVQGRISGLHFS 195

Query: 189 ---ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241
               T I   HL      +E   AK   F+ L  T     N DD       +  KA+ H+
Sbjct: 196 GGIFTNITQDHLDFHKTFDEYIKAKKGFFDALPSTAFALTNVDDRNGKVMLQNTKAEKHS 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +K I  F K K  D  L             +Q++    EV    IG   A N+L   G
Sbjct: 256 YSLKNIADF-KGKVLDCGL-----------FGLQMEIDKQEVWFKLIGQFNAYNLLAVYG 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  + +  +  LS   P  GR ++   +  Q    ++D  Y   P ++K  +  ++
Sbjct: 304 AAVLLEENPENILTELSQLTPPPGRFEQVISS--QQTVGIVD--YAHTPDALKNVLETIN 359

Query: 362 QISPHGEGRRIAVLG 376
            +   G  R I V+G
Sbjct: 360 GLR-QGHERVITVVG 373


>gi|15645360|ref|NP_207534.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
 gi|2313862|gb|AAD07786.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
          Length = 493

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168
           +IAITGS GKT+TK  L   L +    +A   S N  +G+   + +   D  +  I E G
Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIAEAG 229

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
             + G+I+ +T L+ PH+ V+  +   HL  F  +E I   KAE+ +   LEK
Sbjct: 230 ARNKGDIKEITCLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282


>gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 459

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 149/360 (41%), Gaps = 37/360 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T IAI+G+ GKTTT  M++  L          G  +  I V   L  +  ++  G
Sbjct: 107 MRNYDTPIAISGTHGKTTTTSMVSHILLE--------GDCDPTISVGGILPAIHGNIRVG 158

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  ++   E    FL+    P I+VI  +   HL  F  I++I  +  +  E L   G
Sbjct: 159 NSETFITEACEYTNSFLSFF--PKISVILNMDADHLDFFKDIDDIRHSFRKFAELLPADG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
           T+ +N D   +E +  +        + ++G   +AD+      W +    S+  V  +GK
Sbjct: 217 TLIINADTPEYETITRELPC----NVLTYGLEHDADYTAADITWDKYGHPSF-SVLFRGK 271

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   +  + G H   N L  + +  +L    D  +K L  F    G  +R++     G 
Sbjct: 272 KIGSYYLRVPGIHNVSNALAAIAVGRLLDLPNDVIVKGLGSF---TGTDRRFQYKGEIGG 328

Query: 339 FTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  ++A +          V     PH   R  A+L +  +   L+ + H
Sbjct: 329 ITIIDD-YAHHPTEIEATLHAAKNYPHQKVWCVFQPHTYTRTKALLPEFAKA--LTLADH 385

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + LA++ +     ++ +S   +      L       Y  T D +  F+  S   GD+++ 
Sbjct: 386 VVLADIYAARETDNLGISSQDLQKQIQEL--GTPCEYFPTFDEIESFLLKSCAHGDLLIT 443


>gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16]
 gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 477

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 146/369 (39%), Gaps = 43/369 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSM 281
           DD +  E+L   S     K +  +G +++A  +    +    Q    VQ Q        +
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDAQIRAVDARAVDGQMHFTVQRQLNGHTEPPL 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338
           E+V +  G H  QN L  + I + L       +KAL  FH    R +RY         G 
Sbjct: 273 EIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPDGAGT 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VL  
Sbjct: 333 FTLVDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLGT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   +S V+ +G   +   D  AL R++ V       + E M+ +   I  ++  GDVV
Sbjct: 388 VDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILDAVRPGDVV 447

Query: 448 VVKSSNSCG 456
           V   + S G
Sbjct: 448 VTMGAGSIG 456


>gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
 gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
          Length = 471

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 159/370 (42%), Gaps = 51/370 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   L    +  T+         IG  L   R    +  G + + 
Sbjct: 116 IAVAGTHGKTTTTSLVASLLGEGGLDPTFV--------IGGKLNSTRTHARLGSGRYLVA 167

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P IA++T I   H+  +SG  +++  +  E    L   G   L  
Sbjct: 168 EADESDASFL--YLKPMIAIVTNIDRDHMGTYSGNFQQLKKSFLEFLWHLPFYGLAVLCC 225

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD F   +        ++ I ++G S++AD ++  ++Q   +++  V + + K M+++ +
Sbjct: 226 DDPFIRSILPDI----MRPILTYGFSEDADIRITSFQQKEIKNYFRVLRPKKKPMDIILN 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H A N L  + + S L    D   KALS F    G  +R+    +     G   LI
Sbjct: 282 LPGEHNALNALAAIAVASELGIKNDVICKALSHF---SGVDRRFQVLGKLTCKHGDALLI 338

Query: 343 DESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A +  +              PH   R   +  D  ++  LSQ  H+ L
Sbjct: 339 DD-YGHHPREIAATLKAIRHAWPDRRLVMTYQPHRYTRTRDLFSDFVKI--LSQVDHLLL 395

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
              L++Y      +SG    A   AL +SIH++      + E  + L   +   + DGDV
Sbjct: 396 ---LNVYAAGEAVISG----ADSAALLKSIHLNKQINPIHIEDKEKLMSILDEIIQDGDV 448

Query: 447 VVVKSSNSCG 456
           ++++ +   G
Sbjct: 449 LLLQGAGDIG 458


>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
 gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
          Length = 516

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSL 81
           P   + G+S+DSR +   + F A+KG   +G  +I  A+++GA  V++   +  A  G L
Sbjct: 26  PATPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETADHGQL 85

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+PV  V  +   ++ +A +  A    +  + AITG+ GKTT  ++L      + +   C
Sbjct: 86  SVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAGC 145

Query: 140 IGS 142
           +G+
Sbjct: 146 VGT 148


>gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
          Length = 482

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 148/373 (39%), Gaps = 29/373 (7%)

Query: 22  VPQGFVN---GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +P+G      G++ DSR++ P   F A+ G   DG  FI  A++KGA  ++V  D   + 
Sbjct: 11  LPEGGATEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLVPLDAAVAA 70

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              ++PV    +    L  +A A       T+ A+TG+ GKT+    L    +++ +  A
Sbjct: 71  ---NVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALGEEAA 127

Query: 139 CIGSYN-------NHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVRP 184
            +G+           +G               + + G++HL       G  ++    V+ 
Sbjct: 128 SLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLDGVKL 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T I   H+   +  ++   AK  +F E +   G   LN D + +   +A   A G
Sbjct: 188 RAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVCWARG 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I S G+     F L   +       +E+  +GK+  V    +G   A N L+  G+ 
Sbjct: 248 HR-IISVGRKGKGIF-LAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAAGLA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    AL      +GR +     L  G    ID  Y   P +++   + L  I
Sbjct: 306 IGCGGAAEKVFAALEKLTGAKGRMEEA-AHLPNGASVYID--YAHTPDALE---NALEAI 359

Query: 364 SPHGEGRRIAVLG 376
            PH  GR   V G
Sbjct: 360 RPHTAGRLSIVFG 372


>gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
 gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
          Length = 494

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 31/322 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H F  + V +G  +VVVN +  +  ++  + +P
Sbjct: 23  VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKGNVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      + T   +TG+ GKT+   M+ +    + K  A +G+
Sbjct: 83  -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +           P T+A     +  VD +     + +S  G        V   +A+
Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRLRGVEFDVAI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +   HL     +E    AK+ +F    E L K   + LN DD F + L     ++  
Sbjct: 198 FSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLA----SVTP 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++++G +  A F  +  K+  +    E      S  V    +G     N++  +  V 
Sbjct: 254 YEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYVGRFNISNIMAAMIAVW 313

Query: 305 ILTADVDTAIKALSVFHPKEGR 326
               +++  I A++   P EGR
Sbjct: 314 SKGTNLNEIINAVTELEPVEGR 335


>gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
 gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
          Length = 496

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 158/395 (40%), Gaps = 39/395 (9%)

Query: 8   HDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            DLL+A+  G   G   +G +  +  D+R++ P  AF AIKG  +DGH  +      GA 
Sbjct: 4   EDLLRAVPSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAAGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
           L+VV   +  +     +  F V     A   LA     R   +  ++A+TG+ GKTT   
Sbjct: 64  LMVVEV-LPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTTISS 122

Query: 125 MLTIALSSI---------------KKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELG 168
           +++  L  +               +  Y  I +  N + +    A M  V     + E  
Sbjct: 123 LISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALIEAS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222
              L   R     +    A+ T +   HL     +E  A AK+ +F  L      E    
Sbjct: 183 SHALALGRLWATDI--DCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEGPRL 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +  ++   + A  +   YS    K + +  +   Q   Q++  +  + ++ +
Sbjct: 241 AIINADDPYASIMMQATSADVL--TYSLEDPKASAYADQLAVQDGNQTF-RLHYRNQTYQ 297

Query: 283 VVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           VV   +G Y++A  M   L +V        T +  +  F   EGR +  R  L Q F  +
Sbjct: 298 VVSPMLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQ--RLDLGQEFQVV 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D  +   P +++  +  L   SP    R + ++G
Sbjct: 356 VD--FAHTPDAIERVLQELKAQSPK---RLVTIIG 385


>gi|86153443|ref|ZP_01071647.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843169|gb|EAQ60380.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 475

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           A +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E
Sbjct: 202 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 493

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 32/388 (8%)

Query: 12  QAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           QA+   S+G+  +G     V GIS+DSR + P   F A+ G    G +FI +A++ GA  
Sbjct: 4   QAVPLSSLGLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVA 63

Query: 68  VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ + +       ++    + +   D    AL++ A         T+IA+TG+ GKT+  
Sbjct: 64  VLTDAEGATLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVS 123

Query: 124 EM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDF-GIFELGM--- 169
                  + + L+++   T    G++   +      P+TL R        GI    M   
Sbjct: 124 TFVRQIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEAS 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD 228
           SH  + R L   V    A  T     HL      +    AKA +F   L + GT  +N D
Sbjct: 184 SHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINID 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     + A + A G + I + G+    D  L   +  +    +    +GK+ +   + I
Sbjct: 243 DPKGVDMVAIARARGCEVI-TVGRD-GGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLI 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L+  G+V    AD       L       GR  +     + G    +D ++  
Sbjct: 301 GGFQADNVLLAAGLVIACGADPAHVFDTLPHLTTVRGR-MQLAATRDNGGAVFVDYAHTP 359

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
           +     A  + L  + PH  GR +A++G
Sbjct: 360 D-----AIATALQAMRPHVMGRLVAIVG 382


>gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
 gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
          Length = 493

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           ++ +++DSR ++P   F AIKG   DG  FI  A+++GA  V+ + D     G++ +   
Sbjct: 20  ISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVIADADEDNIAGTVKVINN 79

Query: 84  -PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  +D +   L+ +A A     K    ++ ITG+ GKTT  +++    + + +  A +
Sbjct: 80  AIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTNGKTTISQIIAQWTTLLDQPAAVM 139

Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTH-LVRPHI------- 186
           G+  N     +   L     P+++   + EL    + L  +   +H LV+  +       
Sbjct: 140 GTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTALEVSSHGLVQGRVNALSFDA 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGI 244
           AV T ++  HL     +E  A AK  +F       +I +N DD    + LK   HA+ +
Sbjct: 200 AVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHSI-INADDQVGCQWLKEMPHAVAV 257


>gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 468

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 134/312 (42%), Gaps = 36/312 (11%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +GA +VVV       N + + +I S +IPV    D+L         + L +    IAITG
Sbjct: 63  EGADIVVVSSAIPKANPEYIRAIES-NIPVIHRADML---------SLLMTPKKGIAITG 112

Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           + GKTTT  M+++ +          IG   N IG   TL +       G + +  +   +
Sbjct: 113 AHGKTTTTSMISLIMEKNGFDPTVIIGGELNDIGGNATLGK-------GEYLVAEADESD 165

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             F+   + PHIAVIT I   H+  +  +  +  A  +  + + K G I    D+   + 
Sbjct: 166 GSFMK--LHPHIAVITNIENDHMDYYKNMNSMKKAFKKFIDNVNKDGFIIFGNDNKHVQE 223

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMA 293
           L  +++    K  Y+ G +  +DF  +  K     +  +V  + K +  V  H  G H  
Sbjct: 224 LVKETN----KEYYTVGINYPSDFMAKNVKMNGLITHFDVCFREKLLGKVELHVPGLHNI 279

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N    + + + +  D++  I+A+  F    G  +R++   +     +ID+ Y  +P  +
Sbjct: 280 LNATTAIAVGNRIGIDMEGMIEAIKTFR---GVQRRFQIISDIRGIKVIDD-YAHHPTEI 335

Query: 354 KAAISVLSQISP 365
           KA +      +P
Sbjct: 336 KATLRAARNCNP 347


>gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
 gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
          Length = 487

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 161/403 (39%), Gaps = 40/403 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   VA R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           PH +GR + + G  C  G+  +     +AEV+       VW++
Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT 400


>gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 483

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 141/377 (37%), Gaps = 47/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+ G   DG  FI  A+ +GA  V+   D       L +   
Sbjct: 20  ITGVTADSRKVTSGSLFVALPGTAADGRAFIPQALSQGAAAVLAPQDTPDGAAPLLVRSG 79

Query: 87  GVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
            V          A+AAR       AT +A+TG+ GKT+         +++    A +G+ 
Sbjct: 80  DV------RRAYALAARGFYGAQPATCVAVTGTNGKTSVAAFCRQIWAALGIKAASMGTL 133

Query: 143 ----YNNHIGVPLTLARMPVDVDFG--------IFELGMSHLG--------EIRFLTHLV 182
                +  I   LT   +    D G        + E G++HL         + R L   V
Sbjct: 134 GVVAQSGSITESLTPPGL-TSPDAGDAARLLATLAEGGVTHLALEASSHGIDQRRLDG-V 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKS-- 239
               A  T +   HL     +    +AK  +FE L   G T  LN D   +    A S  
Sbjct: 192 TLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLFESLLPRGRTAVLNADSDAYNAFAAASIM 251

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             LG+  +   G+    D  L + +   E   + + ++G   +V+    G   A N L+ 
Sbjct: 252 SGLGVMGVGERGR----DLSLIERRAVPEGQRLILDVRGDRHDVLLPLAGAFQASNALVA 307

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+      D    + AL       GR +R      + +       Y   P  ++   +V
Sbjct: 308 AGLCIAAGEDAARVLHALEKITGAAGRLQRVSGGRGEAYV-----DYAHTPDGLE---TV 359

Query: 360 LSQISPHGEGRRIAVLG 376
           L  + PH  GR I V G
Sbjct: 360 LKALRPHATGRLIVVFG 376


>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 483

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 143/368 (38%), Gaps = 32/368 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  ++            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVPDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P  L L ++  D     VD+ + E+    L   R   + V    A+
Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR--VYGVEFKEAI 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K  Y
Sbjct: 200 FTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKITY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G  KN D +       S     +   + +   +  +  G +   N L ++G   +   
Sbjct: 255 --GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLEGI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            + T  +AL       GR +      N G+  ++D  Y   P  ++   ++L+      +
Sbjct: 313 PLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREFTK 367

Query: 369 GRRIAVLG 376
           GR I+V G
Sbjct: 368 GRLISVYG 375


>gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 461

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 29/286 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIG 141
           +PV    DVL         A L ++   IA+ G+ GKTTT  ML+   S         +G
Sbjct: 91  VPVIHRSDVL---------AWLMNRHKGIAVAGAHGKTTTSSMLSCITSDCGLDPTIVVG 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              N++G      +     D+ + E   S    ++F      P+IAV+T I   HL ++ 
Sbjct: 142 GIVNNLGSNAASGKS----DWVVAEADESDGSFLKF-----NPYIAVVTNIEDDHLDHYG 192

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260
             E I  A A+    +++ G   L YD+     +   +     K + S+G  S++AD+Q 
Sbjct: 193 SQENIQKAFAQFVSQIKEDGCAVLCYDNDRVRTIGEATD----KRVISYGIDSQDADYQA 248

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +     ++ +  +V  QG+++   H  I G H   N L  +     L  ++   + +L  
Sbjct: 249 KNIIYGTDGTHFDVVYQGETIGQGHLIIPGRHNVLNSLGAIAAARELGLELPDILTSLEK 308

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           F    G  +R+          ++D+ Y  +P  ++A +    Q  P
Sbjct: 309 F---SGAKRRFETKGKADGIWVVDD-YAHHPTEIQATLKAARQTHP 350


>gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
 gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
          Length = 495

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 33/371 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR I   + F AI G   DG  FI  A+ +GA LV+         GS+    +
Sbjct: 27  VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  ++ +   L++LA          +IA+TG+ GKTT  +++   +  +    A +G+
Sbjct: 87  VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146

Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188
             N    H+          V+V   +FEL           +S  G ++     V     V
Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
            + ++  HL     ++  A AK  +F   E T    +N DD       +   HA+G+   
Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHE-TRQAIINVDDEVGARWAQQLQHAVGV--- 262

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSI 305
            S     NA+  L   +    +S + + + G   + ++    IG   A N+++ L  +  
Sbjct: 263 -SLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLLS 321

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  ++D  + A     P  GR + ++              Y   P +++ A+  L     
Sbjct: 322 LGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVV----DYAHTPDALEKALRAL---RV 374

Query: 366 HGEGRRIAVLG 376
           H +G+  A+ G
Sbjct: 375 HCQGQLWAIFG 385


>gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
 gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 28/230 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80
           N +++DSR+I   + F A+ G   DG  FI  A+  GA  V+V+TD     G        
Sbjct: 21  NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHSDNA 80

Query: 81  ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134
              + I  F +   + A+         +S  T   +I ITG+ GKT+T +++   ++S+ 
Sbjct: 81  EHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140

Query: 135 KTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTH 180
           +  A +G+  N +              +TL R   D +     +  + +S  G ++    
Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            V   +AV T +   HL     +E  A+AK  +F      G   LN DD+
Sbjct: 201 AVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FNTLGHGLLNLDDA 249


>gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F  +   +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+  + 
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFSEYLRTVTP 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 254 Y----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 486

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 112/246 (45%), Gaps = 16/246 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A++G+ GKTTT  M+ + L  +      +      IG  L    +  D   G      +
Sbjct: 118 VAVSGTHGKTTTTSMVAVVLQHVGADPGYV------IGGKLVTTGLGADAGIGEVIAVEA 171

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +  FL  ++ P IAV+T +   HL N+SGIEEI +  A   + +E+  T+ +  DD 
Sbjct: 172 DESDGSFL--MLSPKIAVVTNVEADHLDNYSGIEEIHANFASFVDRVER--TLVVGVDDP 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIG 289
               +   +   G K + ++G++++AD+++ + +     +   ++   G+ ++      G
Sbjct: 228 GARRVAELARERG-KRVLTYGEAEDADYRVTRVRARGFTTEFTIRTANGEPVDGQLAVPG 286

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    + +   L  D++ A++ ++ F    G  +R+      G   + D SY  +
Sbjct: 287 RHNVLNAAAAVAVADELGHDLEVAVEGIADF---AGAARRFEPKGEAGGVAVYD-SYAHH 342

Query: 350 PASMKA 355
           P  ++A
Sbjct: 343 PTEIEA 348


>gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 160/390 (41%), Gaps = 36/390 (9%)

Query: 12  QAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +A+   S+G+  +   N    GI++DSR +     F A+ G    G +FI +A++ GA  
Sbjct: 4   RAVSLSSLGLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAA 63

Query: 68  VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ + +       ++   +  +   D    AL + A        AT+IA+TG+ GKT+  
Sbjct: 64  VLTDAEGAKIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVS 123

Query: 124 --------EM----LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM- 169
                   EM    + +  + ++  +A   ++      P+TL R   +    GI    M 
Sbjct: 124 TFVRQIWVEMGLPAVNLGTTGVEGAWAAPLAHTTP--EPITLHRTLAEAARNGITHAAME 181

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226
             SH  + R L   V    A  T     HL      E   +AKA +F   L + GT  +N
Sbjct: 182 ASSHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVN 240

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     + A + A G + I + G+    D  L+  +  +    +    +GK+ +   +
Sbjct: 241 IDDEKGIDIAAIARARGCEVI-TVGRD-GGDLHLQGQRFDATGQDLRFTWRGKTYQKRLN 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L+  G+V    AD       L       GR  +     + G    +D ++
Sbjct: 299 LIGGFQGDNVLLAAGLVIACGADAQEVFDTLPHLTTVRGR-MQLAATRDNGAAVFVDYAH 357

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +     A  + LS + PH  GR +A++G
Sbjct: 358 TPD-----AVATALSAMRPHVMGRLVAIVG 382


>gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 496

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 44/322 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------- 82
           +++DSR +   + F A+KG   DG  FI +A+++GA +++   D       L        
Sbjct: 24  MTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSKFAKFN 83

Query: 83  ------IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                   V  V ++   L+++A A       K T+  ITG+ GKTTT ++L    + + 
Sbjct: 84  LDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLG 143

Query: 135 KTYACIGSYNNHI------GVPLTLARMPVDVDFGIF-ELG-------MSHLGEIRFLTH 180
              A +G+  N +       V  T + + +  +   F ELG       +S  G  +F   
Sbjct: 144 GKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQFRAE 203

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKS 239
            +   +A+ T ++  HL   + +EE A AK  +F  L     + +N DD    E L    
Sbjct: 204 ALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQV-INADDEIGREWLTQLP 262

Query: 240 HALGIKTI------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +A+ + T       + F K+    F L+      + SW   +L  +        IG    
Sbjct: 263 NAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRL-------IGAFNV 315

Query: 294 QNMLMTLGIVSILTADVDTAIK 315
            N+L     +  L  D+   IK
Sbjct: 316 NNLLTAFAGLLALGFDIQDLIK 337


>gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 501

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 158/368 (42%), Gaps = 45/368 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F AI G   DG++FI  AVQKGA ++    D+          V 
Sbjct: 8   IKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIK----DCIVK 63

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D    L  L          K  +I +TG+ GKTTT  ++   L    K    IG+  
Sbjct: 64  KVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAGLIGTLF 123

Query: 143 -------YNNHIGVPLT------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                  Y + +  P T      L +M  + V   + E+    L   R   H +   IA+
Sbjct: 124 IKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNR--VHGIDFDIAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
            T I   HL+    I +  ++K ++F+ L +     +N+DD +  ++L+ K   L I   
Sbjct: 182 HTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILAI--- 238

Query: 248 YSFGKSKNA-------DFQL-RKWKQCSEQ--SWME-VQLQGKSMEVVHHGIGYHMAQNM 296
            ++G S  +       DF     +  C ++  + +E V+++     V  + IG H   N 
Sbjct: 239 -TYGLSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ +    +L   +D  ++++  +   + R +     + +  FT+ID+ Y  NP+S +A 
Sbjct: 298 LLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQ----IIYRDKFTVIDD-YCHNPSSYEAV 352

Query: 357 ISVLSQIS 364
            + +  + 
Sbjct: 353 FNAIQNLQ 360


>gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 493

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           ++ +++DSR +     F AIKG   DG  FI  A+++GA  V+  +D V   G++S    
Sbjct: 20  ISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQGASAVLAQSDEVNKTGTISFLDQ 79

Query: 84  -PVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            P+  +D +  ++   AVA R     + K  ++ ITG+ GKTT  +++    + + K   
Sbjct: 80  TPIIYLDAL--SIKLSAVAGRFYHAEQRKMQLVGITGTNGKTTISQIIAQWATLLGKPAG 137

Query: 139 CIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRP 184
            +G+  N +           G P+ + +   D++     +  L +S  G ++   + +  
Sbjct: 138 VMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDLENIGAKLTALEISSHGLVQGRVNALNF 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALG 243
             AV T ++  HL     +   A AK  +F       +I +N DD+     LK   +A+G
Sbjct: 198 DAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPKYSI-INADDTVGASWLKELPNAVG 256

Query: 244 I 244
           +
Sbjct: 257 V 257


>gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|262282744|ref|ZP_06060512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
 gi|262262035|gb|EEY80733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
          Length = 450

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQSASGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL      EE A+AK  I + +   
Sbjct: 162 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A    T+  F  ++  D            ++++   +  +
Sbjct: 218 DYLVLNFNQDWAKGMASQTQA----TVVPFSTTEKED-----------GAYLDGDVLTFR 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ ++V   G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 263 GEAIIKVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 307


>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 492

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 144/349 (41%), Gaps = 45/349 (12%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGI-----SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           DL++ IQ     ++ Q  + GI     + DSR + P   F AIKG   DGH++   AV++
Sbjct: 11  DLVKTIQ-----LINQPNLEGIVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVER 65

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GA  VV    +      LS+P   V D   ++  LA A  A    +  +  ITG+ GKTT
Sbjct: 66  GAVAVVSERSL-----DLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVDVDFGIFE 166
           T  +L   L  +  +   IG+    I    VP              LA+M    D G+ +
Sbjct: 121 TTTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMR---DEGVTD 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVI--TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-- 222
           + M        L  ++     ++  T +   HL      E  A AK  +F  L +  +  
Sbjct: 178 VMMEVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRG 237

Query: 223 --IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+   L +  + A     + ++G    AD      +Q   Q+   +  QG  
Sbjct: 238 KVAVLNADDAQTPLYETMTGA----KVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAK 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + V    IG     N+L+  G +      ++   KAL + HP +GR +R
Sbjct: 294 LPVTVQFIGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGRMQR 342


>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
 gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
          Length = 485

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 54/379 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSL 81
           +  I  DSR+I   + FFAI+G   DGH FI  A++KGA ++V      N +M   I  +
Sbjct: 23  IENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKGAKVIVFDKGFENENMYKDITFI 82

Query: 82  SIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +          +   LAVAA       + K  +I +TG+ GKTT+  M+   L      
Sbjct: 83  KVK--------NSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTSTFMIKSILEEAGFK 134

Query: 137 YACIGSYNNHIG---------VPLTLA-----RMPVD--VDFGIFELGMSHLGEIRFLTH 180
              +G+  N+IG          P +L      +  VD  VD+ + E+    L   R   +
Sbjct: 135 VGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVMEVSSHSLYLDR--VY 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            +  +  + T +   HL      E   ++K  +F+  +     I  NY +   + ++ K+
Sbjct: 193 GIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINSVINIDDNYGERILKEIEEKT 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               IK        K +D +    +  S      V  +G   ++  H  G +   N L +
Sbjct: 253 FTYSIK--------KYSDLKAESVRLHSRGGEFTVDFKGNKEKINIHIPGEYNVSNALGS 304

Query: 300 LGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             I++ +   +   +  + L       GR +      N G+  ++D  Y   P  +    
Sbjct: 305 --ILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVD--YAHTPDGLD--- 357

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VL       +G+ I+V G
Sbjct: 358 NVLRTARDFTKGKLISVYG 376


>gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 518

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 157/367 (42%), Gaps = 39/367 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
           ++GI+ +S+ + P + F A +G   D HD+I  A+  GA  V++   D +  +   +IP 
Sbjct: 43  ISGITDNSKEVTPGKIFVACQGTKVDAHDYIEEAIANGASTVILERADYIDKVKDSAIPY 102

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           F V +    L KLA         +  +  ITG+ GKTTT  ++   ++ +      IG+ 
Sbjct: 103 FKVRNGRKTLAKLASTFYDHPSHRLIVTGITGTNGKTTTTTLIDYIINQLGVKSGLIGTV 162

Query: 144 NNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187
           N  I        L   P    + + E  +    E+++LT  V  H             IA
Sbjct: 163 NCKINGEEFDSKLTTPPATELYSLIEKMVQK--EVKYLTKEVSSHGLKQDRVSAINFDIA 220

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALG 243
            IT I+  H+      ++   +K + F+ L       LN DD    S  +  ++K    G
Sbjct: 221 GITNISYDHMDFHDSWDDYFKSKTKFFQMLSPDSISVLNADDPNAISMGDKTRSKVITYG 280

Query: 244 IKTIYSFGKSKNAD---FQLRKWKQCSEQ----SWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           I +  +   ++N D   F+     Q  E+    +   V+ Q  ++++     G H   N 
Sbjct: 281 ISSPGAMITAENVDLKPFETSFTYQIKEELPTVTNKPVRPQSHNLKI--RMPGKHNIYNT 338

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ + +  +   D +  IK    F    G  +R    + +  FT+ID+  + NPAS+++ 
Sbjct: 339 LLAISVCIMAGFDPEQVIKTAEQF---PGLFRRLEV-IYKNSFTIIDDCAH-NPASIRSV 393

Query: 357 ISVLSQI 363
              +SQ+
Sbjct: 394 FETISQL 400


>gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii NCTC 11218]
          Length = 495

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 33/371 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR I   + F AI G   DG  FI  A+ +GA LV+         GS+    +
Sbjct: 27  VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  ++ +   L++LA          +IA+TG+ GKTT  +++   +  +    A +G+
Sbjct: 87  VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146

Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188
             N    H+          V+V   +FEL           +S  G ++     V     V
Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
            + ++  HL     ++  A AK  +F   E T    +N DD       +   HA+G+   
Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHE-TRQAIINVDDEVGARWAQQLQHAVGV--- 262

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSI 305
            S     NA+  L   +    +S + + + G   + ++    IG   A N+++ L  +  
Sbjct: 263 -SLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLLS 321

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  ++D  + A     P  GR + ++              Y   P +++ A+  L     
Sbjct: 322 LGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVV----DYAHTPDALEKALRAL---RV 374

Query: 366 HGEGRRIAVLG 376
           H +G+  A+ G
Sbjct: 375 HCQGQLWAIFG 385


>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 489

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 154/374 (41%), Gaps = 45/374 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +     F  IKG + DGHD+I  A++ GA  +V+  ++   I + +I V  V 
Sbjct: 26  VSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSGALAIVIQEEI--KIDNENITVIKVR 83

Query: 90  DVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----Y 143
           +   AL  +A V     SK   ++ +TG+ GKTT    +   L S KK  A IG+    +
Sbjct: 84  NTKLALASIANVFYNEPSKEINLVGVTGTNGKTTVIHYIKDILESYKKRTAIIGTLGYEF 143

Query: 144 NNHIGV-----PLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPHIAV 188
           N          P T   + +   F  F          E+  S L + R         + V
Sbjct: 144 NKEKASIQKVNPTTPESLELQGLFREFINKGAENIVMEVTSSALAKQR--VEYCDFKVGV 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   + K ++F+  E  G I  N DD   E +  K+       I 
Sbjct: 202 FTNLSQDHLEEHGTMENYKNEKIKLFKKCE-LGVI--NLDDGIAEEIIQKASC----KIL 254

Query: 249 SFGKSKNADF---QLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           ++G +K AD    ++R    C   +  + +++ +   +  V   I G     N+L  +G 
Sbjct: 255 TYGINKEADIRATEIRYRNDCIIFKIKFRDIKWRWWCITDVKVNIPGKITVYNVLAAIGA 314

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D+   I  LS      GR +  +  LN+         Y   P +++  + +  +
Sbjct: 315 CIGLGMDMGDIISCLSNLRHVPGRLEMIKNNLNKNIIV----DYAHTPDALERLLMMARE 370

Query: 363 ISPHGEGRRIAVLG 376
            +   +G+ I V G
Sbjct: 371 TT---KGKLITVFG 381


>gi|307720865|ref|YP_003892005.1| Mur ligase middle domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978958|gb|ADN08993.1| Mur ligase middle domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 481

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 30/282 (10%)

Query: 103 RLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVD 159
           +LRS     II ITGS GKT+ K      LS   K YA   S N   G+   +   +  D
Sbjct: 153 KLRSMKDLEIICITGSYGKTSIKNFTAQILSHKFKVYATPRSVNTLGGIIADINNNLSQD 212

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE- 218
            +  + E G    G+I  +T  + P   V+  +  AH+  F  ++ I + K EI +  + 
Sbjct: 213 TEIYVCEAGARQSGDIYEITTFLEPQTVVVGRVGEAHIEYFKSLKNIIATKLEIMQSPKL 272

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K   I  +  D   E           K  +   + KN D  L       E +  +++L+G
Sbjct: 273 KQAFIHTSVTDEPHE-----------KVTFFGDEIKNIDAGL-------EGTDFDIELEG 314

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K++ +    +G     N+ + + I        D  I A+    P E R +  +     G 
Sbjct: 315 KTLHLHTDILGAFQTMNIAVAVRIAKSFGLSDDEIIDAVKNLEPVEHRLQLIKA----GG 370

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             ++D+ YN N   M   I + S      +GR++ V   + E
Sbjct: 371 KIILDDGYNGNIDGMLEGIRLCSL----HKGRKVIVTPGLVE 408


>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
 gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
          Length = 450

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
 gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
          Length = 492

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 153/385 (39%), Gaps = 49/385 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+ F N IS+DSR+I   + F A+ G   DG  FI  A ++GA   +V++D  A  G L 
Sbjct: 16  PESF-NNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQGAVAALVHSDDPAEHGRLK 74

Query: 83  IPVFGVDDVL-----------GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           +   G   VL           GA      A RL+    +I +TG+ GKT+  +++   ++
Sbjct: 75  LEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLK----LIGVTGTNGKTSITQLMAQLVA 130

Query: 132 SIKKTYACIGSYNNHIGVPL------TLARMPVDVDFGIFELGMSHLGEIRFLTH----- 180
            + K  + +G+  N +   L      T   + +      F L  + L  +   +H     
Sbjct: 131 LLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGADLCAMEVSSHGLIQG 190

Query: 181 ---LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-----FF 232
               V   +AV T ++  HL     ++    AK  +F+      +  +N DD        
Sbjct: 191 RVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK-FTSLQSGLINLDDEVGRQWLS 249

Query: 233 ELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           E   AK     I + Y+   S    D         +   W E Q      ++    +GY 
Sbjct: 250 EEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQ-----AKLASPLLGYF 304

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N++  LG + ++  D+     A SV   K   G+  R   + G   ++D  Y   P 
Sbjct: 305 NLSNLVAALGALYLIGYDMRA--MAASVPQLKSVAGRMERFTTDNGVTLVVD--YAHTPD 360

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           +++ A+  L     H EG+   + G
Sbjct: 361 AIEQALKALRG---HCEGQLWCLFG 382


>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 533

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 146/369 (39%), Gaps = 45/369 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDV 91
           DSR + P   FFAI G   DG+ +I  AV +GA  ++   D+    GS   I    V+DV
Sbjct: 68  DSRRVVPGALFFAIGGLRTDGNYYIEEAVDRGAVAIITEQDL----GSHFPIDYIQVEDV 123

Query: 92  LGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             AL  +A     R   +  +  +TG+ GKTT   ML   L         IG+    IG 
Sbjct: 124 RMALAVVAREFYGRPDERLGLTGVTGTNGKTTVS-MLVQHLIGGDDKVGLIGTIRYDIG- 181

Query: 150 PLTLARM---PVDVD----FGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIAP 194
           P TL      P  VD        E G      +   +H V           +AV   +  
Sbjct: 182 PRTLPSFRTTPESVDVYALLSQMEDGGCKDAVMEVSSHGVDQKRVYGLDIDVAVFLNLTQ 241

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTI----FLNYDDSFFELLKAKSHALGIKTIYSF 250
            H+     +E    AK  +F G  + G +     +N D ++   L   +   G     +F
Sbjct: 242 DHIDYHKSMEAYYEAKKGLFIG--RAGAVPHSAVVNMDCAYGRRL--LTELPGDVRALTF 297

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G+  +A  +  K +  ++ +  E+   G    VV   +G +   N+L  L        ++
Sbjct: 298 GEHADAQVRAEKVRLLADHTEFELYWPGGQATVVSPLLGRYNVSNLLAALATGWAKGFEI 357

Query: 311 DTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           +  +K +  F     RG   R  L    Q +  L+D  Y     ++K A  +L +I+P  
Sbjct: 358 EHLVKRIPSF-----RGVPGRMELIHEKQPYNVLVD--YAHTDDALKNATGMLREITP-- 408

Query: 368 EGRRIAVLG 376
            G+ I V G
Sbjct: 409 -GKLIVVFG 416


>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Heliobacillus mobilis]
          Length = 528

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 157/381 (41%), Gaps = 47/381 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  ++G++ DSR +AP   FF I G   DGH+F   AV+ GA ++VV          L 
Sbjct: 52  PKQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVE-----RFVDLK 106

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P   V     +L   A A          +I +TG+ GKTTT  M+   L +   +   I
Sbjct: 107 VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVI 166

Query: 141 GSYNNHIG---------VPLT------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+  N +G          P +      LA M  D  D  + E+    L + R L   V  
Sbjct: 167 GTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVVMEVSSHSLDQHRVLG--VNF 224

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTI---FLNYDDSFFELLKA 237
            IA  T +   HL     +E   +AK ++F  L     K G +    +N DD   +    
Sbjct: 225 DIAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSADYFLQ 284

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            S    +    ++G  ++A  + + W    + +   VQ  G ++++     G     N L
Sbjct: 285 VSSVPAV----TYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFNISNSL 340

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKA 355
               +  I+  + +  ++AL       GR +    +++QG  F  ++D  Y   P  +  
Sbjct: 341 AAFTVGWIVGMEPEQIVEALQSLRGVPGRFE----SVDQGQPFSVIVD--YAHTPDGL-- 392

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            ++VL+      EG+ + V G
Sbjct: 393 -VNVLNTAEALAEGKIVTVFG 412


>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 492

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 144/381 (37%), Gaps = 53/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIVVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHL 181
             NN + V             P TL R        + D+ + E+     H+  ++     
Sbjct: 138 --NNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF- 194

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELL 235
               IAV T +   HL       E    K  +F  L             LN DD   E  
Sbjct: 195 ---KIAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF 251

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           K  + A     + ++G    AD Q +      +     V      +EV  + +G     N
Sbjct: 252 KKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYN 307

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++ 
Sbjct: 308 ALAAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE- 362

Query: 356 AISVLSQISPHGEGRRIAVLG 376
             +VLS IS    G+ I V G
Sbjct: 363 --NVLSTISEFSTGKVITVFG 381


>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 490

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 150/402 (37%), Gaps = 62/402 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S  +    AFFAIKG   DGH FI  A+ KGA  V +    +        P  
Sbjct: 22  VKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGASTVFIQDTSIIDTLKRKYPYI 81

Query: 87  GVDDVLGALNKLAVAA-RLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +         LA A+ +  ++ +    +I ITG+ GKT+   +L     +       IG
Sbjct: 82  NIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGKTSVSNLLAQYYENAGYKVGVIG 141

Query: 142 SYNNHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185
           + N  IG  +               TL  M     D  + E+      + R  + L   H
Sbjct: 142 TINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVVVAEVSSHAAHQFRVYSTLF--H 199

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHAL 242
             + T +   HL     +E    AK E F  ++         +N DD +           
Sbjct: 200 GGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAIASVNIDDPYG---------- 249

Query: 243 GIKTIYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             K IY+  K K          +F+++ +     ++   ++ +GK++       G     
Sbjct: 250 --KRIYNDFKEKIDFITYGFEGEFKIKDYNLSLFETLFNIEYKGKTLNFKTKLRGLFNVY 307

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+  ++  +     D+D          P  G   R+     + F  +ID  Y   P +++
Sbjct: 308 NLSASISFLIKDGFDIDFLKDKTLDLKPIRG---RFEVVEAKDFIVVID--YAHTPDALE 362

Query: 355 AAISVLSQISPHGEGRRIAVLG-----DMCE---MGELSQSF 388
             +  L+QI    + R I V G     D  +   MG+++Q F
Sbjct: 363 NILKSLNQIK---QNRVITVFGAGGNRDRTKRPLMGKVAQDF 401


>gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi N40]
          Length = 508

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 157/387 (40%), Gaps = 58/387 (14%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSIPV 85
           G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ ++V + D+    + +  + +  
Sbjct: 30  GVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSRDLDFYSSDVTYIKVDD 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT---------KEMLTIALSS---- 132
           F +   +   + +      + K  +I +TG+ GK++          K+ + +   S    
Sbjct: 90  FNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFF 148

Query: 133 -------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                  IK  Y      +  I   L+   +  +  + I E   SH  ++     +   +
Sbjct: 149 DDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAILE-STSHGLDLETARLIDVNY 206

Query: 186 IAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALG 243
            AV+ T I   HL     I+   + K  +F  + +  G   +N DD +    K   +A+ 
Sbjct: 207 FAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSDFK---NAVK 263

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---------HMAQ 294
               YS  KS  ADF +         S+++ +      E  H G+ Y            +
Sbjct: 264 KSFTYSL-KSSKADFFV---------SFIDEKTDSTRFEFYHKGVKYLANVSLLGSFNVE 313

Query: 295 NMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           N++  L +VS IL  D+   +  L+     +GR       L Q F  +ID  Y   P + 
Sbjct: 314 NVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAF 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCE 380
                +  + + +   R I+V G   E
Sbjct: 370 SKLFPIFKRFATN---RLISVFGSAGE 393


>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
 gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
          Length = 450

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 490

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+KG   DG  F+  AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD   AL   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++ D G+    M   SH  + R L   V+   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELADEGVTHAAMEASSHGLDQRRLDG-VKLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + IEE   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|314934152|ref|ZP_07841513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653057|gb|EFS16818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 210

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R++   N    T+I+++YNA+P SMKAAI  LS +    EGR+I +L D+ E+GE S
Sbjct: 77  RMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM----EGRKILILADVLELGENS 129

Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408
           QS H ++   L+   I  ++  G
Sbjct: 130 QSMHEEVGAYLNNKTIEVLYTYG 152


>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium kluyveri DSM 555]
 gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
 gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
 gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 485

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 145/368 (39%), Gaps = 41/368 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR +   + F  I G   DGH +I  A + GA  +V++  +        IP   V 
Sbjct: 26  IQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNGAAAIVLSKKVDF------IPDCTVI 79

Query: 90  DVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +V      LA+ +            II ITG+ GKTT+  M+   L +       +G+ +
Sbjct: 80  EVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTSTFMVKSILETAGYKVGVVGTIS 139

Query: 145 NHIG---------VPLTLA-----RMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N+IG          P +L      +  VD  VD+ + E     L   R   + V    A+
Sbjct: 140 NYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVMEASSHSLYLDR--VYGVEFCQAL 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      EE   +K  +F+    T    +N DD + E  +    A G K  Y
Sbjct: 198 FTNLTRDHLDFHKTFEEYYKSKIILFKN---TVNSVINIDDKYGE--RVYEDAKGKKLTY 252

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +    KNAD      K  S      +  +G +  +  +  G +   N L + G+      
Sbjct: 253 AI--DKNADLMADNLKIHSRGVNFNISYEGNTKHINLNIPGKYNVMNALGSAGVCLAEGI 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D++T  K L       GR +    + N G+  ++D  Y   P  ++  +    + +   +
Sbjct: 311 DLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVD--YAHTPDGLENILKCAREFT---K 365

Query: 369 GRRIAVLG 376
           G+ I+V G
Sbjct: 366 GKLISVFG 373


>gi|254459232|ref|ZP_05072654.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
 gi|207084125|gb|EDZ61415.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
          Length = 481

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168
           I+AITGS GKT+ K  +T  LS+  + Y+   S N   G+   +   +P D +  I E G
Sbjct: 162 IVAITGSYGKTSIKNFVTEILSTKYRVYSTPRSVNTIGGIMRDINESLPSDTEIYICEAG 221

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               G+I  +T  + P I V+  +  AHL  F  ++ I + K EI +
Sbjct: 222 ARESGDIYEITTFLEPQIVVVGKVGEAHLEYFKSLKNIIATKLEIMQ 268


>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 481

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 37/368 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I  DSR       F AIKG   DGH ++ +A++ GA ++VV+    A   + +I V 
Sbjct: 23  ISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGARVIVVSD---AVFVAANIAVV 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    +  +A         +  ++ +TG+ GKT+T  +L   L + +K    IG+  
Sbjct: 80  RVKDTRAVMAAIAGNFYGHPSKELALVGVTGTNGKTSTTFLLAEILEAYRKKIGVIGTIE 139

Query: 145 NHIG--VPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N IG  V  T    P               DVD  I E+    L   R         I V
Sbjct: 140 NRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIMEVSSHALVLNR--VDGCDFDIGV 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     ++  A+AKA++F   + +    +N D  + +++     A  I    
Sbjct: 198 FTNLTQDHLDFHETMDNYAAAKAKLFSMCKIS---IINVDSPYSKVMLDSCKAETI---- 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G    A F  +     + ++   ++  GK +++V    G     N +  +     L  
Sbjct: 251 TYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVPIPGEFTVYNTMCAIICAYKLGV 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D    AL       GR + ++    +G+  L+D  Y   P  ++   +VL+ I    +
Sbjct: 311 PLDFIAXALKNVKGVPGRVQSFQST--KGYSVLVD--YAHTPDGLE---NVLTAIKQFAK 363

Query: 369 GRRIAVLG 376
           G  + V G
Sbjct: 364 GDIVTVFG 371


>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 531

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 97/232 (41%), Gaps = 32/232 (13%)

Query: 24  QGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           QG  + ISI  +SR + PQ  F AIKG   DGH F+  AV+KGA  VV    + A IG  
Sbjct: 25  QGDPDVISIQYNSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVVTEEPVEAPIG-- 82

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + V  V D   AL  +A     R   K  +  ITG+ GKTT        L +       
Sbjct: 83  -VAVIRVKDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAEAMLGAAGCKVGI 141

Query: 140 IGSYNNH---------IGVP------LTLARMPVD--VDFGIFELGMSHLGEIRFLTHLV 182
           +G+ ++          +  P       TLARM VD  V   I E+    L + R      
Sbjct: 142 VGTVSSRWPGHEKESSVTTPESLELQETLARM-VDAGVTHAIIEVSSHALTQSR--PAFC 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDD 229
           +    V T I   HL     +E    AK  +F+ L     ++  T  +N DD
Sbjct: 199 QFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVINLDD 250


>gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Staphylococcus epidermidis FRI909]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 39/326 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H F  + V +G  +VVVN +  +  ++  + +P
Sbjct: 23  VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKGNVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      + T   +TG+ GKT+   M+ +    + K  A +G+
Sbjct: 83  -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH----LGEIRFLTHLVRP 184
               +           P T+A     +  VD +     + +S     LG +R     V  
Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F + L     
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLA---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++    ++++G +  A F  +  K+  +    E      S  V    +G     N++  +
Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYVGRFNISNIMAAM 309

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326
             V     +++  I A++   P EGR
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGR 335


>gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 493

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 20/238 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           ++ +++DSR ++P   F AIKG   DG  FI  A+++GA  V+ + D     G++ +   
Sbjct: 20  ISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVIADADKENIAGTVKVIDN 79

Query: 84  -PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  +D +   L+ +A A     K    ++ ITG+ GKTT  +++    + +++  A +
Sbjct: 80  AIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTNGKTTISQIIAQWTTLLEQPAAVM 139

Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTH-LVRPHI------- 186
           G+  N     +   L     P+++   + EL    + L  +   +H LV+  +       
Sbjct: 140 GTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTALEVSSHGLVQGRVNALSFDA 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           AV T ++  HL     +   A AK  +F       +I    D    + LK   HA+ +
Sbjct: 200 AVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNSIINGDDQVGCQWLKEMPHAVAV 257


>gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis CO72]
          Length = 520

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 155/379 (40%), Gaps = 51/379 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFI------LHAVQKGAGLVVVNTDMVASIGS-LSIP 84
           +DSR I   + F  +K    D    +      L +V+  A  V+   D+       + IP
Sbjct: 46  LDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDSAAFVISELDLAGLDLDDIQIP 105

Query: 85  VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +  V ++   L  L +AARL+     +   IIA+TG+ GKTT  +++     +   + A 
Sbjct: 106 IISVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164

Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N  +G  +  A    DV                +  L  S  G  ++    V   
Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241
            A+ T ++  HL   + +     AKA++F+       + G + L+ + + F+   A    
Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEAADFRI 284

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G    YS  K  NADF  +  +   +   +EVQ     M  +   +G     N+L ++ 
Sbjct: 285 IG----YSQQKP-NADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLASMA 339

Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + L     AD+   I  L     +  RG+  R +   G F +ID  Y   P ++K   
Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VLS +  H  GR IAV G
Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407


>gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 493

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 150/372 (40%), Gaps = 33/372 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81
            V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++    
Sbjct: 24  LVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIID 83

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A +G
Sbjct: 84  DIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMG 143

Query: 142 ---------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                          +  N + +  TLA +  +       L +S  G I+     +    
Sbjct: 144 TTGNGFLDDLKEAANTTGNAVEIQHTLASL-AEQQAQYTALEVSSHGLIQGRVKSLSFAA 202

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T ++  HL     +EE A+AK  +F    +     +N DD   E+  A +  L    
Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCAQAIINVDD---EVGAAWAKQLTNAI 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVS 304
             S   +   +  L   +    +S + ++  G+  E   H   IG   A N+++    + 
Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    +   +   P  GR + ++         ++D  Y   P +++ A+  L    
Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQA--EHRAKVVVD--YAHTPDALEKALQAL---R 371

Query: 365 PHGEGRRIAVLG 376
            H +G+  A+ G
Sbjct: 372 VHCDGQLWAIFG 383


>gi|227551623|ref|ZP_03981672.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257895775|ref|ZP_05675428.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|293377610|ref|ZP_06623799.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
 gi|227179186|gb|EEI60158.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257832340|gb|EEV58761.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|292643610|gb|EFF61731.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
          Length = 444

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P          +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   ++ I+++ +A   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   L+A         IY +G ++N D Q R  ++ +  S  +V   G    V H 
Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +      N+L  LG++++      D+    + +  F    G  +R+   +     T++D
Sbjct: 260 TVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   ++
Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371


>gi|157736998|ref|YP_001489681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698852|gb|ABV67012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 478

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 28/273 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168
           I+ IT S GKT+ K  L   L +  K Y    S N   G+ L + + +P D    I E G
Sbjct: 159 IVEITASFGKTSIKNYLYHILKNKYKVYKTPRSVNTIAGIVLDVNKDLPADTQIYIAEAG 218

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNY 227
               G+I  +T  + P I VI ++   H+  F  +E I + K EI +    K G +    
Sbjct: 219 ARVKGDIEEITMFLEPQICVIGSVGEQHIEYFKTLENIINTKMEILKSPNMKMGFV---- 274

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                        ++ I    +  K  N+   L   K   +  W +V++ G         
Sbjct: 275 -----------HESVPISNSQNITKFPNS---LHIVKSNLDGIWFDVEVGGNIEHFYAPI 320

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+   + +   L  D+     AL+     E R ++           ++D+S+N
Sbjct: 321 LGSFNAINLTAVILVAHYLGMDILEIKAALTTLPQVEHRLQKIEANGK----IIVDDSFN 376

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            N   M  A+++ S      EGR++ +   + E
Sbjct: 377 GNLEGMLEAVNICSSY----EGRKVIITPGLVE 405


>gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
 gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 466

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 108 ATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           A II ITG+ GKTTT  M+  I LS        + S  N IGVP + L       D  + 
Sbjct: 108 AFIIGITGTDGKTTTSSMVEAICLSGANSREQRVFSAGN-IGVPFSSLVGEMRKGDIAVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
           EL    L   R      RP +AVIT I P HL  + G ++  A AK  I+    K  T+ 
Sbjct: 167 ELSSYQLERCRSF----RPDVAVITNIMPDHLDRYGGSMKRYAEAKYRIYAQQRKQDTLV 222

Query: 225 LNYDDSFFELLKA 237
            N DD   E L+A
Sbjct: 223 YNADD---ETLRA 232


>gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 493

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 150/372 (40%), Gaps = 33/372 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81
            V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++    
Sbjct: 24  LVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIID 83

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A +G
Sbjct: 84  DIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMG 143

Query: 142 ---------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                          +  N + +  TLA +  +       L +S  G I+     +    
Sbjct: 144 TTGNGFLDDLKEAANTTGNAVEIQHTLASL-AEQQAQYTALEVSSHGLIQGRVKSLSFAA 202

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T ++  HL     +EE A+AK  +F    +     +N DD   E+  A +  L    
Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCDQAIINVDD---EVGAAWAKQLTNAI 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVS 304
             S   +      L   +    +S + ++  G+  E   H   IG   A N+++    + 
Sbjct: 259 AVSLAPTTEFKHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    +   +   P  GR + ++ A N+    +    Y   P +++ A+  L    
Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQ-AENRAKVVV---DYAHTPDALEKALQAL---R 371

Query: 365 PHGEGRRIAVLG 376
            H +G+  A+ G
Sbjct: 372 VHCDGQLWAIFG 383


>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
 gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
          Length = 518

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 152/380 (40%), Gaps = 40/380 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S+D+R+++    F A+ G   DG  FI          ++   D      + ++PV 
Sbjct: 31  VSGVSLDNRTLSAGSVFIAVPGDKVDGRAFI-EKCDSATAAILAEADTFGVDLTGAVPVV 89

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   ++++A           TII ITG+ GKTT   +L   LS ++ +   +G+  
Sbjct: 90  HIPQLKQKISRVAANFYGHPSRSLTIIGITGTNGKTTCAYLLAQLLSKLQFSCGMVGTLG 149

Query: 145 ----NHIGVPLTLA----RMPVDVD-----------FGIFELGMSHLGEIRFLTHLVRPH 185
               +  G P+ L       P  +D            G   + +S  G  +     V  +
Sbjct: 150 FAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQVGAVAMEVSSHGLAQGRVADVDFN 209

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGI 244
            A+ T ++  HL   + +EE A+ KA +F   E+   + +N DD+    +L        I
Sbjct: 210 GAIFTNLSRDHLDYHASLEEYAATKAALF-AREELSFVVINADDAVGVNILTNGVAPQAI 268

Query: 245 KTIYSFGKSKNADFQLR--------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              YS G  +    Q          +W   S Q+  ++     + E+    +G +   N+
Sbjct: 269 TYSYSLGGEQALVAQSENTIVAHSIEWG--SSQTVAQLHTPWGAAELATGLVGRYNLSNV 326

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L     L   +   +  +       GR +R   +  Q     +D  Y   P +++  
Sbjct: 327 LAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSS-EQPLAVFVD--YAHTPDALE-- 381

Query: 357 ISVLSQISPHGEGRRIAVLG 376
             VLS+++ + +G+   V+G
Sbjct: 382 -KVLSEVAAYTQGKLWVVIG 400


>gi|167838007|ref|ZP_02464866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 164

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 312 TAIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368
            A+KA L  F P +GR +  R AL      T+ID++YNANP SM+AAI VL +Q +P   
Sbjct: 2   AAVKAGLEAFAPVKGRLQVARAALGSLAGATMIDDTYNANPDSMRAAIDVLAAQSAP--- 58

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
             R+ V+G+M E+G+   +FH ++        I  ++  G   L   +A   +   H+ +
Sbjct: 59  --RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACEAYGAAAR-HFDD 115

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +   + ++      ++VK S      R+++ L  E
Sbjct: 116 AAALVAALVAANFGARATLLVKGSRFMKMERVVDALANE 154


>gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
 gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
          Length = 523

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 106/262 (40%), Gaps = 37/262 (14%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+G      +N +S+DSR + P   FFA +G    GHD+I  AV KGA  V V  D +  
Sbjct: 35  SVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGA--VAVAYDPIIP 92

Query: 78  IGSL--------SIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLT 127
           + S+         +P+  + D+   L  +A    LR   +  ++ +TG+ GKT+    L 
Sbjct: 93  LSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNGKTSVSHFLA 152

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLV 182
            AL   +     IG+    +GV L  A  P      D      +L ++     R+    V
Sbjct: 153 QALHQQEAPCGLIGT----LGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRYAVMEV 208

Query: 183 RPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             H              A+ T ++  HL     +    +AK  +F G        +N DD
Sbjct: 209 TSHALEQGRVNGVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLF-GQPGLRHAVINVDD 267

Query: 230 SFFELLKAKSHALGIKTIYSFG 251
           +  E   A  H     T+ S+G
Sbjct: 268 TAGEAFLA--HLPAEVTVISYG 287


>gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID1]
 gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
 gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
          Length = 445

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KAEIF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAEIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      S  ++ LQG
Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273


>gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 500

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++     AF  IKG   DGH++I  A++ GA LVVV+     S     I   
Sbjct: 38  ITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGARLVVVDEFFDTSKIDGKIDYI 97

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++            +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 98  KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIK 157

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
           N IG     A+   P   D       M + G +  +   V  H             + V 
Sbjct: 158 NMIGSKEIEAQHTTPESYDLQKLFWQMKNEG-VDSVVMEVSSHSLELYRVYDCDFDVGVF 216

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   +AK ++FE  +K     +N DDS+      K          +
Sbjct: 217 TNLTQDHLDFHGTMENYFAAKLKLFEMSKKR---VVNADDSW-----GKRIIEMYPDCVT 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  +A    +  K    ++  E+   GK  E+  +  G     N L        L  +
Sbjct: 269 YAKDSDAQVCTKNVKLFVNKNQFELWYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIE 328

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +DT  K L       GR +      N+ F  +ID  Y   P  +   ++++  +    EG
Sbjct: 329 LDTIKKGLEDLKAVPGRFEIVES--NERFTIVID--YAHTPDGL---LNLMKTVDDVAEG 381

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 382 RKVLLFG 388


>gi|311031282|ref|ZP_07709372.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. m3-13]
          Length = 436

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 43/333 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG         +   K T IA+TG+ GKT+T  +L+  +   K
Sbjct: 77  IEAAKELNIPVIRYPQFLG---------QFMEKYTSIAVTGAHGKTSTTGLLSHVIQGAK 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T   IG             R   D ++ +FE       +  FL++   P   ++T I  
Sbjct: 128 PTSYLIGD---------GTGRGVEDSEYFVFEACEY---KRHFLSYY--PDYTIMTNIDF 173

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  I+++ SA  E+   ++    I    DD + + ++AK     +  IY +G  +
Sbjct: 174 DHPDYFGSIDDVFSAFQEM--AMQVKKGIIACGDDEYLQKIQAK-----VPVIY-YGFGE 225

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTA 313
             DFQ R  ++ +E +  +V ++         +G G H   N L  + +       VD  
Sbjct: 226 ENDFQARHVEKSTEGTTFDVYVRNNHYATFKINGYGDHNIMNSLAVIALCHYEEIPVDVI 285

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L  F   EG  +R+   +  G   LID+ Y  +P  ++A I   +Q  P  +   IA
Sbjct: 286 QSQLLTF---EGVKRRFSEKV-IGSQVLIDD-YAHHPTEIRATIDAANQKYP--DRDVIA 338

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           V          +Q+F  + AE LS     HV+L
Sbjct: 339 VF--QPHTFTRTQTFLNEFAESLS--GADHVYL 367


>gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 464

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 163/399 (40%), Gaps = 59/399 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ ++++S  P + F A++G    G D+I  A+ KG   ++V++  +  +    IP  
Sbjct: 19  IKGLCLNAQSTQPGDLFIALQGKLTHGADYINQAIDKGCVAILVDSKEIECV----IPSI 74

Query: 87  GVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            +D++   L  LA      + K  II+ITG+ GKT+    ++  L+ +      IG+   
Sbjct: 75  RIDNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVAYFISQLLTKLGIKNGLIGTLGI 134

Query: 146 HIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                L+L   P               ++   I E+    L + R     ++   A+ T 
Sbjct: 135 THSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSSHALTQDRIAGLNIKQ--AIFTN 192

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTI 247
           +   HL     +++  + K ++F  L+   ++ LN DDS    F  + K K      +  
Sbjct: 193 LTQDHLDYHHTLDKYQATKEKLFV-LDTVESVILNQDDSHYKHFLNITKDKK-----RIS 246

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS G     DF   K     EQ ++ VQL     E+    +G     N+L  L  V  L 
Sbjct: 247 YSLG-----DFDSIK---TIEQGFL-VQLDHYVFEIPF--LGEFNLLNILAALNSVEALG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D  I       P  GR +R    L       ID  Y   P ++  AI+ L +  P+ 
Sbjct: 296 FKRDDIIPLFYQLLPPPGRMQRIEPHL-----AWID--YAHTPDAIGNAITTLKKHYPNF 348

Query: 368 EGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYN 400
           + R +   G         EMG+++     +LA+ + L N
Sbjct: 349 KIRIVFGCGGNRDKDKRAEMGKIAS----NLADTIILTN 383


>gi|257884456|ref|ZP_05664109.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257887239|ref|ZP_05666892.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257820294|gb|EEV47442.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257823293|gb|EEV50225.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 444

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P          +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   ++ I+++ +A   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   L+A         IY +G ++N D Q R  ++ +  S  +V   G    V H 
Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +      N+L  LG++++      D+    + +  F    G  +R+   +     T++D
Sbjct: 260 TVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   ++
Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371


>gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
 gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
          Length = 445

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KAEIF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAEIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      S  ++ LQG
Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273


>gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
 gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
          Length = 487

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 56/382 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ +GA  V    +  AS+ + S  +
Sbjct: 17  LIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAIARGAAAVAFEAEGAASMHADSAVL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  + G L+  A+A R   + +    ++ +TG+ GKT+  ++L  AL  + +    +G
Sbjct: 77  VPVKGLAGQLS--AIAGRFYGEPSRALYLVGVTGTNGKTSVSQLLAQALDLLGQPCGIVG 134

Query: 142 SYNN---------------HIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180
           +  N                +GV  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T ++  HL     +E   +AKA++F          +N DD+F   L A++H
Sbjct: 192 ----DVAVFTNLSRDHLDYHGSMEAYGAAKAKLF-AWPNLRCRVINLDDAFGRELAAQTH 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI------GYHMAQ 294
              +   YS     +AD     +  CSE  + +  ++ + +     G+      G     
Sbjct: 247 ESRL-IGYSL---NDAD----AFLYCSEAHFDDHGVRARLVTPRGEGVLRSNLLGRFNLS 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  +G +  L   +D  +K L       GR +R    L  G   L+   Y   P +++
Sbjct: 299 NLLAVVGALLGLDYALDEILKVLPQLQGPAGRMQR----LGGGDKPLVVVDYAHTPDALE 354

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
               VL  + PH EGR + + G
Sbjct: 355 ---KVLEAMRPHVEGRLVCLFG 373


>gi|121535922|ref|ZP_01667718.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305493|gb|EAX46439.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 183

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%)

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           VV   IG H   N L  + +   L    +     L  F P    G R       G+ T+I
Sbjct: 4   VVLPAIGRHNVYNALAAIAVGLGLGLAPEEIAAGLKKFAPS---GMRQHIEKKAGY-TII 59

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +++YNA+P SM++AI  L++I+    GR+IAVLGDM E+G +++  H  + + L+   + 
Sbjct: 60  NDAYNASPLSMQSAIETLAEIAG---GRKIAVLGDMLELGHVAKEAHRRVGKQLAEIGVD 116

Query: 403 HVWLSG-----FHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            V   G       V A    +  +I    + E  D L   +Q+    GD ++VK S    
Sbjct: 117 TVITVGTLARDIAVTAKACGVACAIACDTHEEAKDVLRQVMQA----GDTILVKGSRGMK 172

Query: 457 FYRLINL 463
             +++++
Sbjct: 173 MEKVLDV 179


>gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans
           OS217]
 gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans
           OS217]
          Length = 479

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++    +  ++     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASVYAQAQRDPTFVIGGLLNSAG---TNARLGT----SRYLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++VIT I   H+  + G  E++ +   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D     +  +   +G + I ++G S++AD Q   + Q   QS   V+ + K  + +V + 
Sbjct: 234 DEINREIMPR---VG-RQIVTYGFSQDADVQALNFNQIGHQSQFVVRRKDKEDLALVLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343
            G H   N L  + + S    D ++ +KAL+ F   EG G+R++         G   L+D
Sbjct: 290 PGEHNVLNALAAIAVASEDDIDDESIVKALAEF---EGIGRRFQHLGEFNTANGQVMLVD 346

Query: 344 ESYNANP----ASMKAAIS------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P    A++KAA +      ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVLATIKAARAGWPDKRLVMAYQPHRYSRTRDLYDDFVEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y+     + G    A   AL RSI +       +  + D L   +   L  GD++
Sbjct: 401 LLLDVYSAGEAAIPG----ADGRALCRSIRLRGQIDPIFVASPDQLASVLPDVLQAGDLL 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 LTQGAGNIG 465


>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 498

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 163/400 (40%), Gaps = 60/400 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR + P   F A++G   DGH F   AV++GA  V+V  + VA + + SIP   V 
Sbjct: 26  ITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMVE-EPVAEVPA-SIPQVVVP 83

Query: 90  DV--LGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           D     AL    VA RL      +  +I +TG+ GKTT   ++   L S  +    IG+ 
Sbjct: 84  DTRHWSAL----VADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRKAGLIGT- 138

Query: 144 NNHIGVPLTLARMPVD----------------VDFG----IFELGMSHLGEIRFLTHLVR 183
              +G  L  A  P+                 VD G    + E+    L E R     V 
Sbjct: 139 ---VGAKLGQASWPLPNTTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERRAAG--VS 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKTGTIF--LNYDDSFFELL 235
              A  T +   HL     +E  A AKA +F       G +   +++  +N DD +  ++
Sbjct: 194 FACAAFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWSSVM 253

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              S A     I ++G  +  D + R  +  +  +   V     + E+    IG     N
Sbjct: 254 AEASAA----PILTYGIERAGDVRARDVRLSASGARFFVDSPAGAFEIETPLIGRFNVYN 309

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + I +++     T I+     +P    G+  R    Q F   +D  Y   P  ++ 
Sbjct: 310 TLAAVAI-ALVEGLTPTEIQEGIRSYPSVP-GRMERIDEGQPFSVFVD--YAHTPDGLEN 365

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            ++ + + +P    R + V+G  C  G+  ++    +AEV
Sbjct: 366 VLASVREFAP---ARVLVVVG--C-GGDRDRTKRPKMAEV 399


>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
 gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
          Length = 445

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLAGIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADMWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHKADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              C +Q      +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGCLKQGNEDLIATQDIPLQ-----------GLHNAANVMAAIALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|225870026|ref|YP_002745973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
 gi|225699430|emb|CAW92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
          Length = 457

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 31/279 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  +D  +  L ++ +A  L S+A II ITGS GKTTT  M+   L++   +    G   
Sbjct: 94  VRALDKAISILTEVELA-YLVSEAPIIGITGSNGKTTTTTMIADVLNAGNHSALLAG--- 149

Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +IG P + +A+     D  + EL    L      T   +PHIAVIT + P HL      
Sbjct: 150 -NIGFPASEVAQAATAKDILVMELSSFQL----LGTEQFQPHIAVITNLVPTHLDYHGSF 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+  +AK  I   +     + LN D    + L  K+ A  +   +S  +  +  +    +
Sbjct: 205 EDYIAAKRRIQHRMTDKDYLVLNADQELVKSLAQKTKASPV--FFSTKEKVDGAYLADGY 262

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E+  M     G          G H  +N L T+ +  +         + LS F   
Sbjct: 263 LYFKEERLMSAAELGVP--------GRHNIENALATIAVAKLRGISNQVISRTLSHF--- 311

Query: 324 EGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAIS 358
             RG ++R      LNQ   T  ++S + N  + + A+S
Sbjct: 312 --RGVKHRLQLVGTLNQ--VTFYNDSKSTNILACQKALS 346


>gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 489

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 152/374 (40%), Gaps = 36/374 (9%)

Query: 23  PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G   ++G+S DSR + P  AF A+ G   DG  FI+ A  +GA + + +  + A    
Sbjct: 24  PAGLLDISGLSSDSRKVMPGNAFVAVAGTKADGAGFIVDAAGRGAAIAIASQAVDA---- 79

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134
            SIPVF V +    L+  A     R   T++A+TG+ GKT+    T+++   A   +++ 
Sbjct: 80  -SIPVFAVKEPRRFLSIAAARFHGRQPDTMVAVTGTAGKTSVASFTRQIWAYAGHAAAMI 138

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL---GMSH---------LGEIRFLTHLV 182
            T   +    N  G   T    PV +   + EL   G++H         L + R     V
Sbjct: 139 GTTGVVSPTRNEYGSLTTPD--PVSLHALLAELAGEGVTHAAMEASSHGLDQCRL--DGV 194

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R   A  T +   H+     +E   +AK  +F+ L   G+  + + D  +     K+   
Sbjct: 195 RLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGSPAVIFADDPWSAQAIKAATD 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I + G+ K     L++ +    +   E+ + G+  EV     G     N L+  G+
Sbjct: 255 AGHDIRTVGR-KGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDIPLAGDFQVANALVAAGL 313

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 +   A+ AL       GR          G    +D  Y   P +++   +VL  
Sbjct: 314 AMSTGVEAKIAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLGS 367

Query: 363 ISPHGEGRRIAVLG 376
           + P   GR I V G
Sbjct: 368 VRPFTTGRVIVVFG 381


>gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
 gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
          Length = 500

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 29/230 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---P 84
           N +++DSR+I   + F A+ G   DG  FI  A+  GA  V+V+TD     G + +    
Sbjct: 21  NELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLLGDNA 80

Query: 85  VFGVDDVLGALNKL--AVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSI 133
             GV      LN+   A+AA+    A          II ITG+ GKT+T +++   ++S+
Sbjct: 81  ERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQLVTSL 140

Query: 134 KKTYACIGSYNNHIGVPL-----------TLARMPVDVD---FGIFELGMSHLGEIRFLT 179
           ++  A +G+  N +   L           TL R   + +     +  + +S  G ++   
Sbjct: 141 RRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLVQGRV 200

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             V   +AV T +   HL     +E  A+AK  +F      G   LN DD
Sbjct: 201 DAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR-FSTLGHGLLNLDD 249


>gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
          Length = 487

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 154/390 (39%), Gaps = 43/390 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+L  +  +++      +V  I  +SRS+A  + F AIKG   DGHD+I +A+++GA  V
Sbjct: 6   DILYKVTINAVVGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIENAIKQGAIAV 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126
           V   + +       I    V+D   AL  +A        S   ++ +TG+ GKTT   +L
Sbjct: 66  VC--EYLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTTIASLL 123

Query: 127 ---------------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMS 170
                          T+ +    K Y    +  + + +   L+ M  + V+F   E+   
Sbjct: 124 FQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFMEVSSH 183

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + + R  T  +     + T ++  HL       E    K   F+ L  +     N DD 
Sbjct: 184 GIHQKR--TQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKKSFFDNLSSSAFALTNADDK 241

Query: 231 ----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +  KAK +  G+K   ++              Q  E S+  + L+    +V   
Sbjct: 242 NGAIMLQNTKAKQYKYGLKNYANYK------------AQILENSFSGMLLKINDSDVWTR 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L       +L  +    ++ +S      G   R++  +++   T I + Y
Sbjct: 290 LIGGFNASNVLAIYATAELLGLEKTEILRLISELESVSG---RFQYLISEENITAIVD-Y 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P ++K  +  ++ I    E   I V+G
Sbjct: 346 AHTPDALKNVLETINSIRTKNE-ELITVIG 374


>gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2866]
          Length = 488

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      VA IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H        +A+ 
Sbjct: 142 GNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKVAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 464

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+AITG+ GKTTTKEM+   LS+ ++  A   S N+       L  +  D +  +FE  +
Sbjct: 105 IVAITGTSGKTTTKEMIKHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAV 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              G++       +P I +IT I   HL+    +E    AK E+ + ++  GT+ +N +D
Sbjct: 165 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAED 224

Query: 230 SFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              + L  +K +   +K     G   +  F+    +   +    ++    K+ ++   G 
Sbjct: 225 MNTKKLDISKFNGRLVKV----GIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGF 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESY 346
           G H   N L  +     +   +  A   L  F     R  + +  L +G     L+D+++
Sbjct: 281 GQHQVYNALAAIAAAYEIGVPIPVAANQLQSF-----RQLKKQLQLFEGINHSMLLDDTW 335

Query: 347 NANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +    S++AA+ VL+++   G+G ++IAV+G + ++G      H    E++    +  + 
Sbjct: 336 SITTTSLEAALKVLNEL---GDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLI 392

Query: 406 LSGFHVLALKD 416
             G H   + D
Sbjct: 393 TIGEHARIMAD 403


>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium novyi NT]
 gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium novyi NT]
          Length = 483

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 144/371 (38%), Gaps = 40/371 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I+  + F AI+G + DGH FI  A+ +GA ++V + ++    G   I V 
Sbjct: 23  VSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEGAKVIVCSKEIEIKKGITYIKVE 82

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                L  +     A+ L +  +    +I ITG+ GKTT+  M+   L S   +   IG+
Sbjct: 83  NTRKALAIM-----ASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILESAGHSTGLIGT 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPHI-------------AV 188
            +N IG     A         + E+      + I +    V  H               +
Sbjct: 138 ISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDRVYGLEFSQGI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E    AK  +F+  + +    +N DD++ E +         K  Y
Sbjct: 198 FTNLTQDHLDFHKTFENYYRAKLSMFDNAKNS---IINIDDTYGERILNDVPDSSNKITY 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SI 305
           S    K AD   +     +  +   +  + K   +     G +   N L + G      I
Sbjct: 255 S--TEKKADLFAKDIVNHARGAEFVLCYKDKETHINLSIPGIYNVYNALCSAGACLSEGI 312

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              DV   ++++ V    E   K Y    + GF  +ID  Y   P  ++   ++L     
Sbjct: 313 SMEDVKKGLESVVVPGRCENATKDY----DLGFDVIID--YAHTPDGLE---NILETARD 363

Query: 366 HGEGRRIAVLG 376
             +GR I+V G
Sbjct: 364 FTKGRLISVFG 374


>gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL S4-378]
          Length = 491

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 152/394 (38%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ GA 
Sbjct: 3   LKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----- 223
              L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +  +     
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235

Query: 224 -FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD     ++  + A     I +FG  + ADF     +  S  S  +++       
Sbjct: 236 AVLNADDKESVRMQTATAA----HIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFS 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   V  AI  +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAG--QDFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y+  P S+   ++VL  I    E R   V+G
Sbjct: 350 D--YSHTPDSL---LNVLQTIDEFAEKRVFVVVG 378


>gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 445

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KAEIF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAEIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      S  ++ LQG
Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273


>gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
 gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
          Length = 485

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 140/366 (38%), Gaps = 31/366 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR +     FFAI+G   DGH +I   V+ GA +V+   +++  I        
Sbjct: 23  VTALVFDSRKVVKDSVFFAIRGTMSDGHQYIDDTVEAGASVVIC--EVLPEIRRELATYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V++   AL ++A        SK  +I ITG+ GKTT   +L      +      I +  
Sbjct: 81  QVENSSVALGQMAANFYGHPSSKLKLIGITGTNGKTTIATLLFKLFRELGYGVGLISTVQ 140

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGE------IRFLTHLVRPHI--------AVIT 190
           NHI   +  +         + EL  S + +      +   +H V  H          V +
Sbjct: 141 NHINDVVVPSTHTTPDPIALNELLQSMVDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFS 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL      +    AK   F+ L        N DD    ++   + A    T  ++
Sbjct: 201 NITHDHLDFHHTFDNYIKAKKAFFDVLPANAFALTNLDDRNGMVMLQNTKA----TKKTY 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              + ADF+ +      E S+  + L     +V    +G   A N+L   G   +L  + 
Sbjct: 257 ALKQLADFKAK----IIENSFSGLHLDIDQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQ 312

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              + ALS     EGR      +  Q    ++D  Y   P +++  +S +  I   G  +
Sbjct: 313 LAVLTALSNLTGAEGRFD--YVSSKQQIIGIVD--YAHTPDAVQNVLSTIQDIRK-GTEQ 367

Query: 371 RIAVLG 376
            I ++G
Sbjct: 368 VITIIG 373


>gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
 gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
          Length = 493

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 143/360 (39%), Gaps = 46/360 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I +DSR + P   F AI+G   DG  FI  AV +GA  VV   D      S  +P  G+ 
Sbjct: 24  IQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDGEFIPPSTPVPCIGMR 83

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+   L+ LA     +   K  ++ ITG+ GK+TT  ++    + +      +G+  N +
Sbjct: 84  DLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVANWRTLLGGKAGVMGTIGNGL 143

Query: 148 GVPL------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIA 193
              L      T + + V  +    +   + L  +   +H +  H         AV T ++
Sbjct: 144 FGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALPFAAAVFTNLS 203

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK- 252
             HL     +E   +AK ++ + ++++  + +N DD            LG K +  +   
Sbjct: 204 RDHLDYHGTMEAYGAAKEQLLQLVDESNAV-INRDDE-----------LGAKWLEKYPAA 251

Query: 253 ---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGI------GYHMAQNMLMTL 300
              S N   +    +Q + Q  ++   QG   ++     +G+      G     N+L  +
Sbjct: 252 VAFSVNGPIEHHSGRQLTAQQ-LDFHQQGFRAQINSSWGNGVLSAPLLGRFNVSNVLAAM 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++ +L  D +  +       P  G   R  C    G   L    Y   P +++ A+  L
Sbjct: 311 GVMLVLGYDFNELLATAPKLQPVTG---RMEC-FGGGDTPLAVVDYAHTPDALEKALQAL 366


>gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CNPAF512]
          Length = 486

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 151/366 (41%), Gaps = 30/366 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+S DSR +AP  AF A+ G   DG  FI  A  +GA + + +  + A     +IPV 
Sbjct: 27  ISGLSSDSRKVAPGNAFVAVAGTKADGAGFIADAAARGAVVAIASQPVDA-----AIPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIKKTYACI 140
            V +    L+  A     R   T++A+TG+ GKT+    T+++   A   +++  T   +
Sbjct: 82  AVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVV 141

Query: 141 GSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRPHIAVIT 190
               N  G      P++L ++  ++ D G+    M   SH L + R     V+   A  T
Sbjct: 142 SPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKLSAAAFT 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+     +E   +AK  +F+ L   G   + + D  +     K+ A     + + 
Sbjct: 200 NLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAVKAAADAGHDVRTV 259

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G+ K     L++ +    +   E+ +  +  EV     G     N L+  G+        
Sbjct: 260 GR-KGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVAP 318

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A+ AL       GR          G    +D  Y   P +++   +VL+ + P   GR
Sbjct: 319 KAAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLNSVRPFTTGR 372

Query: 371 RIAVLG 376
            + V G
Sbjct: 373 VVVVFG 378


>gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 487

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 148/352 (42%), Gaps = 42/352 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIP 84
           V  I+ D+R++     F  +K  + D H F   A+++GA ++++    D V       + 
Sbjct: 26  VKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAIKQGATILMIEHEIDQVPE----KVT 81

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  VDD   A++ +A     +      +I +TG+ GKT+    +   LS++ +    IG+
Sbjct: 82  IIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTGTNGKTSITHFIAQVLSTLGEKTGVIGT 141

Query: 143 YNNHI-GVPLTLARM-PVDVD-----------------FGIFELGMSHLGEIRFLTHLVR 183
             N + G  L   ++ P   D                 +G+ E+  S L + R   + + 
Sbjct: 142 IRNTLEGEKLKTKKINPTTPDAIELQASLKEMLDKGATYGVMEVTSSALAQNRV--YGMA 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + V T +   HL     +E   +AK ++F+   + G +  N DD   E +K + H   
Sbjct: 200 YQVGVFTNLTQDHLEEHGTMEAYGAAKLKLFKNC-RIGIV--NQDDLMAEKIKQEGHC-- 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G  K ADF+  +  Q       ++   GK   +     G     N L T+  +
Sbjct: 255 --KVITYGIDKKADFKAEQIHQGLTGVDFKLIYLGKQYSINFPVPGRFSVYNALATIATL 312

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMK 354
             L  ++   ++AL   +   G   R++   N +G   ++D  Y  +P S+K
Sbjct: 313 VSLGYELTNILEALHWINEVPG---RFQIIPNTKGVLVVVD--YAHSPDSLK 359


>gi|293556209|ref|ZP_06674799.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
 gi|294615651|ref|ZP_06695506.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291591480|gb|EFF23134.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291601628|gb|EFF31890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
          Length = 444

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P          +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   ++ I+++ +A   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   L+A         IY +G ++N D Q R  ++ +  S  +V   G    V H 
Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +      N+L  LG++++      D+    + +  F    G  +R+   +     T++D
Sbjct: 260 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   ++
Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371


>gi|257898345|ref|ZP_05677998.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|293571806|ref|ZP_06682822.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
 gi|257836257|gb|EEV61331.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|291608060|gb|EFF37366.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
          Length = 444

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P          +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   ++ I+++ +A   +   ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   L+A         IY +G ++N D Q R  ++ +  S  +V   G    V H 
Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259

Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +      N+L  LG++++      D+    + +  F    G  +R+   +     T++D
Sbjct: 260 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + Y  +PA +KA I           +++   PH   R IA++ +  E  +L+   ++
Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371


>gi|323339597|ref|ZP_08079871.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
 gi|323092992|gb|EFZ35590.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
          Length = 467

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 40/317 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L    V   L  + T I + G+ GKT+T  +L+  LS +  T   IG      GVP 
Sbjct: 112 LKVLTYPEVVEMLVEETTSIGVAGAHGKTSTTGLLSHVLSGVSPTSYLIGDGTGK-GVP- 169

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  D  F +FE       E R       P   ++T I   H   F+GIE++  A  
Sbjct: 170 -------DARFFVFEAD-----EYRRHFAGYHPDYTIMTNIDFDHPDYFTGIEDVCDAFQ 217

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ +  +K   +F+  +D   + +K          +Y +G  +N D +    K+ ++ S 
Sbjct: 218 ELADHTKK--ALFVWGEDKHLQNIKVDI------PVYRYGTEENDDVRAENIKRTTKGSS 269

Query: 272 MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V L  + +      + G H   N L  + +  +   D +   + L  F     +G + 
Sbjct: 270 FDVYLHDEFLGTFDIPLFGKHNVLNSLAVIAVSHLEKIDAEEVKRELLTF-----KGVKR 324

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
           R +  +    +I + Y  +P+ + A I    Q            PH   R +A++ D  +
Sbjct: 325 RFSEKKVADMVIIDDYAHHPSEIAATIDAARQQYPKKKIIAVFQPHTFSRTVALMDDFAK 384

Query: 381 MGELSQSFHIDLAEVLS 397
             +L+   +  L E+ S
Sbjct: 385 SLDLADKVY--LTEIFS 399


>gi|20806550|ref|NP_621721.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254478921|ref|ZP_05092283.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|20514987|gb|AAM23325.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214035143|gb|EEB75855.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 450

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 140/362 (38%), Gaps = 78/362 (21%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMP-----VDV 160
           K   + +TG+ GKTTT  ++   LS S +K        N   G+  +L +       +D 
Sbjct: 47  KENKVIVTGTNGKTTTSGLIAHLLSYSGRKVVHNREGANMRTGIATSLIKSSSLTGNLDR 106

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  +FE+  ++L    F+ + + P++ VIT      L  F  ++ I +   +    L K 
Sbjct: 107 DAAVFEVDEANLS---FVVNEINPNVVVITNFFRDQLDRFGELDLIVNKVKKALSDLSKD 163

Query: 221 GTIFLNYDDSFF----ELLKAKSHALGI--------------------------KTIY-- 248
             + LN DD F     E L+AK    GI                          K IY  
Sbjct: 164 SFVLLNADDPFTASIGEDLEAKVLYYGIEDDIKSLKSSSFEQKFCPVCGTKYEYKKIYYG 223

Query: 249 --------SFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   + GK + + DF+        +    ++  + K   V  + +G +   N+L +
Sbjct: 224 HLGNYYCPNCGKKRPSLDFRASDIFLSEDGIKFKLSYKDKIFTVKSNLVGLYNVYNILAS 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +L  D  T +KA+  + P EGR ++ +    +    LI      NP   ++ +++
Sbjct: 284 TSAGMLLNLDDSTILKAVENYWPIEGRLQKIQIRGKKAIINLI-----KNPVGFESTLNM 338

Query: 360 LSQISP-----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           LSQ              + +GR ++ L D            ++L E LS   ++H+  SG
Sbjct: 339 LSQFDKPLNLLILINDNYADGRDVSWLWD------------VNLEEFLSKAKVNHIITSG 386

Query: 409 FH 410
             
Sbjct: 387 LR 388


>gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 464

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 49/363 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ ++++S  P + F A++G   +G D+I  A+ KG   ++V++  +      +IP  
Sbjct: 19  IKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKGCVAILVDSKEIEC----AIPSI 74

Query: 87  GVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS--- 142
            V+++   L  LA       +K  +I +TG+ GKT+   +++  L  +      IG+   
Sbjct: 75  RVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVTYLISQLLEKLGVKNGLIGTLGI 134

Query: 143 ------YNNHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 Y N     LTL R+       D+ + + E+    L + R     ++   AV T 
Sbjct: 135 THNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIEISSHALAQNRIAGLNIKQ--AVFTN 192

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKTI 247
           +   HL     ++E  + K  +F  L    ++ LN DD     F ++ K K      +T 
Sbjct: 193 LTQDHLDYHHTLDEYKTTKQRLFT-LNCVKSVILNQDDHHYKHFLKVSKGKK-----QTS 246

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS       DF   K  Q   Q ++ VQL     E+    +G     N+L TL  V  L 
Sbjct: 247 YSLN-----DFNSIKIIQ---QGFL-VQLDHYVFEIPF--LGEFNLLNILATLNSVEALG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +  I  +       GR ++        +   ID  Y   P +++ AI+ L +  P+ 
Sbjct: 296 FKRNDIIPLIYQLSTPPGRMQQIN-----HYHAWID--YAHTPNALENAITTLQKHYPNF 348

Query: 368 EGR 370
           + R
Sbjct: 349 KIR 351


>gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
 gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 489

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 180/425 (42%), Gaps = 70/425 (16%)

Query: 64  GAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T + A         +L IPV    ++L  L       R R     +A+ G+ 
Sbjct: 80  GADVVVVSTAISADNPELLEAQALRIPVVQRAEMLAEL------MRYRHG---VAVAGTH 130

Query: 118 GKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++       ++     IG   N  G   T AR+        + +  +   +  
Sbjct: 131 GKTTTTSLIASVYGQAERDPTFVIGGLLNSAG---TNARL----GHSRYLIAEADESDAS 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  DD     L
Sbjct: 184 FL-HL-QPMVSVVTNIEADHMDTYEGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVREL 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQ 294
             K   +G K I ++G S++AD Q   + Q +  S   ++  G + MEVV +  G H   
Sbjct: 242 LPK---VGRK-IVTYGFSEDADVQALNFVQEAYLSRFTLRRAGVEDMEVVVNLPGQH--- 294

Query: 295 NMLMTLGIVSILTAD-VDTA--IKALSVFHPKEGRGKRYR---C-ALNQGFFTLIDESYN 347
           N+L  L  +++ T D +D A  I+AL+ F   +G G+R+    C   N+G   L+D+ Y 
Sbjct: 295 NVLNALAAIAVATEDEIDDAAIIQALADF---QGIGRRFEQLGCFDTNKGEMVLVDD-YG 350

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +P+ + A I                 PH   R   +  D  E+  LSQ   +D   +L 
Sbjct: 351 HHPSEVAATIKAAKAGWPEKRLVMVYQPHRYSRTRDLYDDFVEV--LSQ---VDCLLLLD 405

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
           +Y      + G    A   AL RSI         +    + L   +   L  GD+V+ + 
Sbjct: 406 VYAAGESPVPG----ADSRALCRSIRQRGQLDPIFVSDSEQLLSLLPDVLQAGDLVLTQG 461

Query: 452 SNSCG 456
           + + G
Sbjct: 462 AGNIG 466


>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 499

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 55/382 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  ++   LS        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMG 144

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP- 184
           +    +G            P TL R        + D+ + E+    L       H+ R  
Sbjct: 145 NNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL-------HMERVK 197

Query: 185 ----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFEL 234
                IAV T +   HL      +E    K+ +F  L     TI      LN DD   E 
Sbjct: 198 GCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEY 257

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            K  + A     + ++G    AD Q +      +     V      +EV  + +G     
Sbjct: 258 FKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVY 313

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++
Sbjct: 314 NALAAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE 369

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
              +VLS IS   +G+ I V G
Sbjct: 370 ---NVLSTISEFAKGKIITVFG 388


>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 485

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 37/388 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++    
Sbjct: 22  DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEM---KHNVSYIL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IGTIEY 136

Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            IG  +   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KIGDKVFEAVNTTPESLDLIKIFDKTLKK--KIEYVIMEVSSHSLEIGRVEVLDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD + + L      +    I S
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRL-YDEFIVDNPEIIS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G  +N D +       S+  +++V+ + +  +V    +G     N L  +GI   +   
Sbjct: 254 YG-IENGDLE----GDYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGIALKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I      
Sbjct: 309 MEEILKRVSNIKAAPGRFEALDCG--QDYKVIVD--YAHTPDALVNVIVAARNIK--NGS 362

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           R I + G   +     +     +AE LS
Sbjct: 363 RIITIFGCGGDRDRTKRPIMAKVAEDLS 390


>gi|332653273|ref|ZP_08419018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
 gi|332518419|gb|EGJ48022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
          Length = 460

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GKTTT  +++  L    KT    G    +IG PL    +P   D    +  +
Sbjct: 117 LVAVTGSDGKTTTTTIISEFLKEAGKTVYVGG----NIGKPL----LPDVADMDPEDYAV 168

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + +T    P+IAVIT +AP HL     +EE  +AK  IF    +   + LNYD+
Sbjct: 169 LELSSFQLMTMEQSPNIAVITNLAPNHLDYHHTMEEYTNAKKNIFLHQGEGDRLILNYDN 228

Query: 230 SFFELLKAKS 239
                + A++
Sbjct: 229 EVTRSMAAEA 238


>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
 gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
          Length = 485

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++       ++    
Sbjct: 22  NGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEM---KYNVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTR--IGTIEY 136

Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            +G  +   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLELGRVDVIDFDCALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+      +N DD +
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDDY 236


>gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
 gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
          Length = 487

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 147/381 (38%), Gaps = 59/381 (15%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            VN I  DSR +   + F AIKG   DGH++I  A+  GA  ++  T          +PV
Sbjct: 23  MVNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAKTIICET----------MPV 72

Query: 86  FGVDDV----LGALNK-LAVAA-----RLRSKATIIAITGSVGKTTTKEML--------- 126
             VDDV    +   NK LA+ A            ++ +TG+ GKTT   +L         
Sbjct: 73  TIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISSLLYQLFKKAGF 132

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLT 179
            + L S  K       Y      P  L           V V+F   E+    + + R  T
Sbjct: 133 KVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVSSHGIHQKR--T 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELL 235
             +    A+ T ++  HL       E    K  +F+ L K   +  N DD       +  
Sbjct: 191 EGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNLPKKAFVLTNVDDKNGLVMLQNT 250

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           KA+ +   +KT         AD++     Q  E  +    L+    EV    IG   A N
Sbjct: 251 KARKYTYALKTY--------ADYK----AQILENQFNGQLLKIDGSEVWSKLIGDFNAYN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ML   G   +L  +    ++ LS     +G   R++  +++   T I + Y   P ++K 
Sbjct: 299 MLAIYGTAQLLGLEKLEILRLLSELENVDG---RFQYFISKERITAIVD-YAHTPDALKN 354

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +  ++++   G    I V+G
Sbjct: 355 VLDTINKLRT-GNENVITVVG 374


>gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 21/222 (9%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYA 138
           L IPV    D L AL          +    +A+ G+ GKTTT  ML ++L+++    +YA
Sbjct: 92  LGIPVVHRSDALAAL---------MTGTRPLAVAGTHGKTTTTSMLAVSLTTLGLDPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G  +     P + A        G  E+ ++   E     H   P +AV+  +   H +
Sbjct: 143 IGGDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           N++ IEEI  +       +   GT+ ++ D      L  +       TI ++G +++AD 
Sbjct: 193 NYASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRERADLTIVTYGSAEDADV 252

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++RK       S + V + GK +       G H A N +  L
Sbjct: 253 RVRKVSPRGLTSEVTVAIDGKLLTFTVSVPGSHYAHNAVAAL 294


>gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus RF122]
 gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus RF122]
          Length = 494

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F     ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|114777861|ref|ZP_01452792.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551852|gb|EAU54392.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 458

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 162/400 (40%), Gaps = 53/400 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
           +A+     IPV    ++L  L ++            +A+ GS GKTT   ++   + +  
Sbjct: 83  IAAAEKRGIPVIPRAEMLAELMRMKQG---------VAVAGSHGKTTMTSLIAHGMEAAG 133

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  TY  IG      G    L   P    + + E   S    +R       P IAV++ I
Sbjct: 134 MDPTY-IIGGRLTATGSNARLGASP----WLVAEADESDGSFLRL-----SPTIAVVSNI 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL ++     +  A       +   G + L+++      L+   H    K + ++G 
Sbjct: 184 DPEHLDHYGDFATLQEAFRTFVNLVPFYGRVVLHHEHPHVAALRLGLH----KPVTTYGS 239

Query: 253 SKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADV 310
           S  AD  L + +  SE Q +     +  ++   H  + G H A+N L  + ++  L  D+
Sbjct: 240 SLQADLHLLESRAGSEGQCFTAASREHGNLGEFHLPMPGRHNAENALAAMAVLMDLGIDI 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAA--------IS 358
           +T   AL+ F   + R +R  C    G   ++D+ Y  +P    A++ AA        IS
Sbjct: 300 ETIRSALASFEGIQRRFQRTSC----GTGVMVDD-YAHHPREVLATLVAARDCWPERHIS 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           V+ Q  PH   R   ++ D   MG    +  + L   L +Y  S   + G +  AL   +
Sbjct: 355 VIFQ--PHRFTRTRDLMDDF--MGAFDTANEVSL---LPIYAASEAAIEGVNSQALCQGM 407

Query: 419 PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               H H S  E +D     ++  L  G +V++  + S G
Sbjct: 408 LARGHRHVSLLENLDEAAAAVREQLAAGHIVLLMGAGSIG 447


>gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
 gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
          Length = 474

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    +A + +  T+  IG   N  G    L +         + + 
Sbjct: 119 IAVAGTHGKTTTTSLTAAIMAEAGLDPTF-VIGGRLNSAGTNARLGQ-------SRYLVA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P  A++T +   H+  + G   ++ +   E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCV 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD     L  + +    + +  +G S++AD +    +Q    +    V+ +G+ ++V  +
Sbjct: 229 DDPVVRKLLPRVN----RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLI 342
             G H   N L  + + +   A  +  I+ L+ F    G G+R+        + G  TL+
Sbjct: 285 MPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNF---TGVGRRFDVQGDYHFDGGSATLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  + +  P   GRR+A+L         +Q  + D  EVLS  ++ 
Sbjct: 342 DD-YGHHPREVAATIDAIREGWP---GRRLAMLFQPHRYTR-TQDLYEDFVEVLSGVDVL 396

Query: 402 --SHVWLSGFHVLALKD--ALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+ +G   +   D  AL RS+        + +  D L   + S L +GD++V + +
Sbjct: 397 LMLEVYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGA 456

Query: 453 NSCG 456
            + G
Sbjct: 457 GNVG 460


>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae JJA]
 gi|254766060|sp|C1CD51|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae JJA]
          Length = 450

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 452

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 10/158 (6%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  +D  +  L ++ +A  L S+A II ITGS GKTTT  M+   L++  ++    G   
Sbjct: 90  VCALDKAISILTEVELA-YLVSEAPIIGITGSNGKTTTTTMIADVLNAGNQSALLAG--- 145

Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +IG P + +A+     D  + EL    L      T   +PHIAVIT + P HL      
Sbjct: 146 -NIGFPASEVAQAATAKDILVMELSSFQL----LGTEQFQPHIAVITNLVPTHLDYHGSF 200

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           E+  +AK  I   +     + LN D    + L  K+ A
Sbjct: 201 EDYIAAKWRIQHRMTDKDYLVLNADQELVKSLAQKTKA 238


>gi|294784925|ref|ZP_06750213.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
 gi|294486639|gb|EFG34001.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
          Length = 432

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 174/426 (40%), Gaps = 60/426 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H DG +F +    K  G+   N   V  +    I +  +D++ 
Sbjct: 32  DKKAMTSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 78

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   +++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 79  IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLS 131

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P+I++I  + P H+  ++  +E    K 
Sbjct: 132 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKF 187

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270
            I +   +      N DD   E    ++  +  K I S  K K AD  ++  K C  E S
Sbjct: 188 NITKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVKNDKICYGENS 243

Query: 271 WMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++V +L  K         G H  +N L  +    IL  D +   + L +  P E R + 
Sbjct: 244 IIDVDKLSLK---------GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTEL 294

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +    N G    I++S   N  S K AI              I + G   +  +L+    
Sbjct: 295 F---FNYGKVKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP--- 340

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             LAE++   NI  V+L G     ++  L +   + Y +      + +++SL D      
Sbjct: 341 --LAEMIK-ENIKEVYLIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFT 394

Query: 450 KSSNSC 455
           K SN  
Sbjct: 395 KESNEV 400


>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. PCC 7002]
 gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
           PCC 7002]
          Length = 499

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 155/376 (41%), Gaps = 37/376 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIG 79
           Q  V G++ +S+++ P + F  + G   DG +F   A++ GA   VV+ + +    A+ G
Sbjct: 24  QQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFWQGAIEAGAIAAVVSPEALEKFPATKG 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKK 135
              IPV   D V+       +A     K T    ++ +TG+ GKTTT  ++   L + ++
Sbjct: 84  ECVIPV--ADPVIACAE---IANLFYEKPTASLKLVGVTGTNGKTTTSHLIEYFLQAAQQ 138

Query: 136 TYACIGS-YNNHIGV-PLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPH--- 185
             A IG+ Y    G   +     P  +D         E G +H   +   +H +  +   
Sbjct: 139 PTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNTH-AVMEVSSHALHQNRVK 197

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T +   HL     +E+   AKA +F      G   +N D+ + + L   +H
Sbjct: 198 GCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEYCHGRAVVNLDNPYGDRL---AH 254

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG K      +   AD  + +    +      ++    ++E     +G    +N++  +
Sbjct: 255 KLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPMGTVEFTSPLVGQFNLENVMAAI 314

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D++  I  L  F    GR +R   A +Q    ++D  Y   P S++   ++L
Sbjct: 315 GAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVIVD--YAHTPDSLE---NLL 369

Query: 361 SQISPHGEGRRIAVLG 376
               P    + I V G
Sbjct: 370 KASRPFIAKKMICVFG 385


>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 410

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +  
Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AIK +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I    E R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378


>gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 487

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 161/403 (39%), Gaps = 40/403 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           PH +GR + + G   +     +S   ++ E L+      VW++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLA----DGVWVT 400


>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria innocua Clip11262]
 gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
          Length = 491

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 152/394 (38%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ GA 
Sbjct: 3   LKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----- 223
              L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +  +     
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235

Query: 224 -FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD     ++  + A     I +FG  + ADF     +  S  S  +++       
Sbjct: 236 AVLNADDKESVRMQTATAA----HIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFA 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   V  AI  +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAG--QDFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y+  P S+   ++VL  I    E R   V+G
Sbjct: 350 D--YSHTPDSL---LNVLQTIDEFAEKRVFVVVG 378


>gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 528

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 161/423 (38%), Gaps = 90/423 (21%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L Q  Q H+        V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ + A LV
Sbjct: 4   NLKQLFQQHN--------VKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALV 55

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +      I      V  V+DV  AL +       +    + A+TG+ GK++    +  
Sbjct: 56  ITDNKKNIVIDK----VIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQ 111

Query: 129 ALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFE-- 166
             S + K  A IG+    I         VP       L+  ++  +     +++  FE  
Sbjct: 112 TYSLLGKKTASIGTIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEAS 171

Query: 167 ---LGMSHLGEIRF----LTHLVRPHIAVITT----------IAPAHLSNFSGIEEI--- 206
              L  + LGEI+      T   + H+    T          +   HLS F+  EE    
Sbjct: 172 SHGLDQARLGEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGD 231

Query: 207 --------ASAKAEIFEGLE------------------KTGTIFLNYDDSFFELLKAKSH 240
                    S +A+   GL                    +G   LN D    E +K   H
Sbjct: 232 TERRTAAYTSDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLH 291

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              IK I + GK    D ++ +     +   +      +        IG   A N+L+  
Sbjct: 292 NHNIKFI-TVGKK--GDLEITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAA 348

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     D +  I+ L+   P +GR +R     N   F      Y+  P +++ A++ L
Sbjct: 349 LSVHYTGFDFNKIIEILTQVKPVKGRMERID---NTNIFV----DYSHTPDALEKALTEL 401

Query: 361 SQI 363
             I
Sbjct: 402 KNI 404


>gi|257869275|ref|ZP_05648928.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803439|gb|EEV32261.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
          Length = 444

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 42/295 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L+  LS ++ T   IG    H G P        + +F  FE  
Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSFLIGDGTGH-GDP--------NAEFFSFEA- 155

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   +  I+++ SA   + + ++K   IF  
Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYQSIDDVFSAFQSMAKQVKK--GIFAF 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD++   L+A         IY +G + + D Q +  ++ +  S  +V +  +++   V 
Sbjct: 208 GDDAYLRKLEADV------PIYYYGVNDDDDVQAKNIQRTTTGSEFDVYIHNENIGHFVL 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D+    + +  F   + R    + A      T++D+ 
Sbjct: 262 PAFGQHNINNALGVIAVAYKEGLDMTEVAEEMLSFPGVKRRFSEKKVAD----MTIVDD- 316

Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           Y  +PA ++A I           +++   PH   R IA++ +  E  +L+ S ++
Sbjct: 317 YAHHPAEIRATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDLADSVYL 371


>gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
 gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
          Length = 478

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 129/323 (39%), Gaps = 45/323 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F AI G  +DGH FI  A+  G   +VV  D+  + G   I   
Sbjct: 23  ITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANGTNTIVVTEDVSQNEG---INYI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL +++  V      K  +I +TG+ GKTTT  M++  L  +      IG+  
Sbjct: 80  KVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTASMISHILEHLNSPCTNIGTNG 139

Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183
             I       P T         + ++ V+  +D  + E     L +  L  I F      
Sbjct: 140 TFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVECSSHGLYLHRLDGIDF------ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV   ++  H+     +E    AK  +FE  +K      N DD +    KA+     
Sbjct: 194 -DVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  Y+F     +DF+    +    +   E+    K+++ V +        N +  +  V
Sbjct: 245 FEDAYTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIVAV 300

Query: 304 SILTADVDTAIKALSVFHPKEGR 326
           ++L  ++    K+L  F   E R
Sbjct: 301 NLLGYELKDIAKSLESFTGVEAR 323


>gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 487

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 173/443 (39%), Gaps = 54/443 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   VA R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      +     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSAAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           PH +GR + + G  C  G+  +     +AEV+       VW++        D  PR    
Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT--------DDNPR---- 405

Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447
             SE    +F  I+   V  D V
Sbjct: 406 --SEAPTNIFDDIRPGFVAADKV 426


>gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 487

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 152/373 (40%), Gaps = 38/373 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    +    +    +P+
Sbjct: 17  LIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAVAYEVEGATVLPITEVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYNN------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP--------HIA 187
           +  +        G+  T   + +    G  +   +    +   +H +           +A
Sbjct: 135 TLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E  A AKA++F          +N DD F   L A+     + T 
Sbjct: 195 VMTNLSRDHLDYHGTMEAYAEAKAKLF-AWNDLKCRVVNLDDDFGRQLAAEKRESRLITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIV 303
                S     +  ++     ++ + V  QG+     HH     +G     N+L  +G +
Sbjct: 254 SLLDSSAYLYVREAQFDDHGVRATL-VTPQGE-----HHLRSTLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R    L  G   L+   Y   P +++    VL+ +
Sbjct: 308 LGLDYALDEILKVLPKLEGPAGRMQR----LGGGTQPLVVVDYAHTPDALE---KVLTAL 360

Query: 364 SPHGEGRRIAVLG 376
            PH +G+ + + G
Sbjct: 361 RPHVKGQLLCLFG 373


>gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 119/316 (37%), Gaps = 26/316 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  DSR   P + F A+KG   DGH FI   +Q G   +VV T  +       + + 
Sbjct: 29  INEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGISALVVET--IPENVPDQVTIV 86

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   AL  LA A       + T++ +TG+ GKTTT  +L    S +      + +  
Sbjct: 87  QVANSAQALGFLASAFYEHPSHQLTLVGVTGTNGKTTTVTLLYDLFSGLGYKCGLLSTVE 146

Query: 145 NHIG--VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRP--------HIAVIT 190
           N I   V  +    P  V        M   G E  F+   +H V            A+ T
Sbjct: 147 NRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEVSSHAVDQGRIAGLDFKGAIFT 206

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL      +    AK   F+ L K     +N DD    ++   + A    ++  +
Sbjct: 207 NITHDHLDYHLTFDNYIRAKKSFFDQLSKRAFALVNIDDKRGMVMTQNTAA----SVNRY 262

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              + A+F+ R      E S   + L   + +     IG   A N+L       +L  D 
Sbjct: 263 SLRQMAEFRAR----IIENSLTGLHLDIDNQDFYGRLIGEFNAYNLLAVYATAVLLEQDK 318

Query: 311 DTAIKALSVFHPKEGR 326
              +  LS     EGR
Sbjct: 319 VETLTQLSRLKAAEGR 334


>gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA1]
 gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA1]
 gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA4]
 gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA1]
 gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA3]
 gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL067PA1]
 gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA1]
 gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA2]
 gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA1]
 gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA3]
 gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA2]
 gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA1]
 gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA2]
          Length = 499

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 112/269 (41%), Gaps = 25/269 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +  R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIF----ELGMSHLGEIRFLTHLVRPH--------I 186
             + G  L  AR     P   D  G+F    E G S +  I   +H +           +
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDV-VIEVSSHALALQRVDGTCFDV 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K
Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +    + +D+Q+  W+     +  +V
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280


>gi|227502956|ref|ZP_03933005.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49725]
 gi|227076307|gb|EEI14270.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49725]
          Length = 80

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F
Sbjct: 10  GNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGF 69

Query: 201 SGIEEIASAKA 211
             +  +A AK 
Sbjct: 70  GSLAGVAKAKG 80


>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
 gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
          Length = 505

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 29/228 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIP 84
           + GI  DSR I     F A+ G   DGH+FI +AV  GA +++     D+     +  I 
Sbjct: 21  IRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQYTNTTEIT 80

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V+D+   L  +A       ++K  I+ ITG+ GKTT+    +  L +I +  A IG+
Sbjct: 81  FVLVEDIRKKLGIIASNYYDYPQNKIKIVGITGTNGKTTS----SFILENILEKTARIGT 136

Query: 143 YNNHI---------GVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             N I           P +L  + +         D+ I E+  SH  EI  +  +++   
Sbjct: 137 TGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVS-SHALEIGRV-DMLQFDS 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSF 231
           A+ T +   HL     +E   +AK ++F  L      G   +N DD +
Sbjct: 195 AIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEY 242


>gi|95930730|ref|ZP_01313463.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133210|gb|EAT14876.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 456

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 45/340 (13%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYA 138
           L +PV    ++L  L +L            IA+ G+ GKTTT  M+   LS   I  T A
Sbjct: 87  LLVPVIPRAEMLAELMRLKYG---------IAVAGTHGKTTTTSMVATLLSHGGIDPT-A 136

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +G   N +G    L +     +F + E   S  G    LT    P IAV+T I   HL 
Sbjct: 137 VVGGRLNALGSNAKLGQG----EFMVVEADESD-GSFLKLT----PTIAVVTNIDEDHLD 187

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            +SG++EI     +    +   G   L  DD+  + L  +      K   ++G +  ADF
Sbjct: 188 YYSGMDEIRGVFLDFINKIPFYGLAVLCLDDANIQTLLPQVQ----KRYVTYGLTPQADF 243

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
              + +  +  +   V  + + +  +   + G H   N L +L +   L   + T  +  
Sbjct: 244 SATEIEHRAGGTEFTVHFRQEKLGRIRLEMPGRHNVLNALASLAVARELDVPMKTICEGF 303

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGE 368
             F    G  +R++  L+     + D  Y  +PA +KA +S         V+    PH  
Sbjct: 304 ESF---AGVQRRFQIKLDDEVMVVDD--YGHHPAEIKATLSAARNGWDRRVVVIFQPHRY 358

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            R  A+  D      ++  +  D+  V+ +Y  S   + G
Sbjct: 359 SRTQALFDDF-----VTAFYQADVLLVMDVYAASEAPIEG 393


>gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus
           influenzae F3031]
 gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae F3031]
          Length = 488

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      VA IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L   +  +    A +G+ 
Sbjct: 82  VKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWVELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA1]
          Length = 499

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 112/269 (41%), Gaps = 25/269 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +  R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIF----ELGMSHLGEIRFLTHLVRPH--------I 186
             + G  L  AR     P   D  G+F    E G S +  I   +H +           +
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDV-VIEVSSHALALQRVDGTCFDV 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K
Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +    + +D+Q+  W+     +  +V
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280


>gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
 gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
          Length = 533

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 112/282 (39%), Gaps = 49/282 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---------------N 71
           V+GI +DSR I P + F A  G   DG  +I  AV  GA +V+                N
Sbjct: 35  VSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVDGGATVVLFEQNDSETILETLLNDN 94

Query: 72  TDMVASIGSLS-IPVFGV----DDVLGALNKLA-----VAARL----RSKATIIAITGSV 117
             + AS  +LS +   G+    + VL  +  L+     +AAR      +K +++ +TG+ 
Sbjct: 95  QQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQVSHIAARFYGNPTNKMSVVGVTGTN 154

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+   ++  AL  ++     + +  N     L            I  L   +L    +
Sbjct: 155 GKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSKLQATENTTPDAIAIQRLAAEYLARKNY 214

Query: 178 -LTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTG 221
            +T  V  H             IAV T ++  HL   S +E    AK ++F  E LE   
Sbjct: 215 HMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDYHSDMESYFQAKRQLFIREELE--- 271

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
              +N DD +   L     A+  + I    + KN D  +  W
Sbjct: 272 AAVINADDEYGRRL-LTDDAVACRKIAFSCEQKNEDLNIENW 312


>gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
 gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
          Length = 505

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 44/382 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83
           ++G++  S+ + P   FFA+ G  +DGHDFI  A+Q G+ ++V + DM     ++  + +
Sbjct: 28  ISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRDMDFYSPNVTYIKV 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL------------- 130
             F +   +   + +      + K  +I +TG+ GK++    + + L             
Sbjct: 88  DDFSIRKFMSNFSNVFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTV 146

Query: 131 -------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH---LGEIRFLTH 180
                  S IK  Y      +  I   L+   +   V + I E   SH   L   R +  
Sbjct: 147 FFDDGSGSLIKNPYRQSTPESTEIHAFLS-NMVKNGVQYAILE-STSHGLDLKTARLID- 203

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239
            V    AV T I   HL     I+   + K  +F  + +  G   +N DD +    K   
Sbjct: 204 -VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSEFK--- 259

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +A+     YS  KS  ADF +    +  + +  E   +G       + +G    +N++  
Sbjct: 260 NAVKKSFTYSL-KSSQADFFVSFINEKIDSTRFEFYYKGVKYFANVNLLGSFNVENVMAA 318

Query: 300 LGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           L +VS IL +D+   +  L      +GR       L Q F  +ID  Y   P +      
Sbjct: 319 LILVSQILNSDIQDIVDKLVCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAFSKLFP 374

Query: 359 VLSQISPHGEGRRIAVLGDMCE 380
           +  + + +   R I+V G   E
Sbjct: 375 IFKRFATN---RLISVFGSAGE 393


>gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum
           ATCC 12472]
 gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC
           12472]
          Length = 464

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 154/368 (41%), Gaps = 44/368 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    L  + +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLTASVLGAAGLDPTFV--------IGGKLTAAGTNAKLGLGEFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P +AV+T I   H+  +    +++  A  +  + +   G   L  
Sbjct: 160 EADESDASFL-HLT-PVMAVVTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVV 284
           DD     ++ +      K + ++G   +AD      +  + Q   +V ++  ++    +V
Sbjct: 218 DDPNVREIRERV----TKPVTTYGLDDSADIYAENVRAAAGQMHFDVVVKNGAITRFPLV 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFF 339
            +  G H   N L  + I     A ++   K LS F    G G+R++      A + G F
Sbjct: 274 LNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEF---AGVGRRFQRYGEVKAQDGGSF 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TLID+ Y  +P  M A ++ +    P    RR+ +L         ++    D  +VLS  
Sbjct: 331 TLIDD-YGHHPVEMAATLAAVRGAFPD---RRL-LLAFQPHRYTRTRDLFEDFVKVLSGV 385

Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +   +S V+ +G   +   D  AL R++ V       + E +  +   I  +  DGDVVV
Sbjct: 386 DALLLSEVYAAGEAPIVAADGRALARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVVV 445

Query: 449 VKSSNSCG 456
              + S G
Sbjct: 446 TMGAGSVG 453


>gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 129/308 (41%), Gaps = 32/308 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  TY   G  N+      + AR+      G + + 
Sbjct: 122 IAVAGTHGKTTTTSLVASVLAEGGLDPTYVIGGRLNS----SASHARL----GSGRYLVA 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   HL  + G  +++     E    L   G   L +
Sbjct: 174 EADESDASFL-HL-KPMMAVVTNIDADHLETYGGDFDQLRHTFDEFLHHLPFYGLAVLCH 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L  +      + + S+G +++AD +    +Q   ++   V     +  V  + 
Sbjct: 232 DDPVLRDLGPEI----ARQVRSYGFAEDADLRAVDIEQSGRRTRFTVVDGEATFPVEVNL 287

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343
            G H  QN L  + +   L  DV    +AL  F   +G G+R++            TL+D
Sbjct: 288 PGRHNVQNALAAIAVARELHVDVAAIQRALQRF---QGIGRRFQDHGTLRFGDARVTLVD 344

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  + A +  +    P   GRR+ V+            F  D A VLS  +   
Sbjct: 345 D-YGHHPREIAATLRAVRDGWP---GRRVLVVFQPHRYSRTRDLFE-DFARVLSEADALL 399

Query: 401 ISHVWLSG 408
           ++ V+ +G
Sbjct: 400 VTEVYAAG 407


>gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
 gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
          Length = 505

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 153/364 (42%), Gaps = 30/364 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +   + F AI         +I  A+ +GA  V+V+      +  L   VF + ++ 
Sbjct: 41  DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAAEGV-ELDKQVFAIANLH 99

Query: 93  GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY------- 143
             + ++A A      +  ++I ITG+ GKT+T  +LT A   +  T A IG+        
Sbjct: 100 EVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTLGAGITGE 159

Query: 144 ---NNHIGVPLTLARMPVDVDF---GIFELGM---SHLGEIRFLTHLVRPHIAVITTIAP 194
              N  +  P   A      DF   G+  + M   SH  E R +   V  +I   T    
Sbjct: 160 RRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDG-VAFNIVAFTNFTR 218

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGK 252
            HL     +EE A+ KA+IF  L    T  LN DD+  E     +   G++ I   S G 
Sbjct: 219 DHLDYHGTMEEYAAQKAKIFT-LPGVTTALLNLDDAAAENHFHNTLPEGMRGIGMTSRGH 277

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ A  +    +  +E    ++ ++G+S  VV   IG     N+L    ++     +   
Sbjct: 278 SE-ASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQGIEPQA 336

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             +AL+   P  GR  R R   ++    ++D  +   P +++ A++ L +    G  R +
Sbjct: 337 IAEALAPLEPVLGRMTRIREN-DKLPLVVVDAGH--TPDAVRQAVTALRE---SGHTRIV 390

Query: 373 AVLG 376
            V G
Sbjct: 391 TVFG 394


>gi|237753180|ref|ZP_04583660.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375447|gb|EEO25538.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 486

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 17/120 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------PLTLARM 156
           S  TIIA+TGS GKT+ K  L+  L    K ++   S N   G+         PLT    
Sbjct: 161 SNLTIIAVTGSYGKTSLKNYLSQILQESFKVHSTPRSVNTLTGIIADINQNLSPLT---- 216

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  I E G    G+I+ +  L+ P I V+  I  AH+  F  IE I   K EI E 
Sbjct: 217 ----DIYIVEAGARGSGDIKEIVELIAPQIVVVGKIGEAHIEYFKNIENIYRTKYEILES 272


>gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae Cit 7]
          Length = 487

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F AI G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLADLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDTFGRELTGIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 450

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
 gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
          Length = 499

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 28/230 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80
           N +++DSR+I   + F A+ G   DG  FI   +  GA  V+V+TD     G        
Sbjct: 21  NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDLGAAAVLVHTDDADQHGKVLHSDNA 80

Query: 81  ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134
              + I  F +   + A+         +S  T   +I ITG+ GKT+T +++   ++S+ 
Sbjct: 81  EHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140

Query: 135 KTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTH 180
           +  A +G+  N +              +TL R   D +     +  + +S  G ++    
Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            V   +AV T +   HL     +E  A+AK  +F      G   LN DD+
Sbjct: 201 AVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDA 249


>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
 gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
          Length = 499

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 55/382 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEGAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144

Query: 142 SYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHL 181
             NN + V             P TL R        + D+ + E+     H+  ++     
Sbjct: 145 --NNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF- 201

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLNYDDSFFEL 234
               IAV T +   HL       E    K  +F  L       EK   + LN DD   E 
Sbjct: 202 ---KIAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLSTTEKKIAV-LNADDPSVEY 257

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            K  + A     + ++G    AD Q +      +     V      +E+  + +G     
Sbjct: 258 FKKITSA----EVITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEIEISLNLVGRFNVY 313

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++
Sbjct: 314 NALAAITVAIVEGIPLTNICDSLSNLKCIEGRME--IIDENQDFLVIVD--YAHTPDALE 369

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
              +VLS IS   +G+ I V G
Sbjct: 370 ---NVLSTISEFSKGKVITVFG 388


>gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 509

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRSI   + FFA  G   DG  FI  A+++GA  VV   D +   G+   P+  V 
Sbjct: 21  LSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAADFPLLAVT 80

Query: 90  DVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +     ++A     ++ A +  +AITG+ GKT+  + L  ALS +    A IG+
Sbjct: 81  GLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSRLTGPCAVIGT 135


>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
 gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV200]
 gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
          Length = 450

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 493

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 161/379 (42%), Gaps = 48/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-------TDMVASIG 79
           + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +        D +A+  
Sbjct: 23  IAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTDAEGARIAADELAASD 82

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM----------LTIA 129
           +  + V      L     L   A+ R   T++A+TG+ GKT+              + + 
Sbjct: 83  AALVVVQDPRQTLAYTAALWFGAQPR---TMVAVTGTNGKTSISTFVRQIWTELGHMAVN 139

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFL--THLVR 183
           L +     A      +    P+TL R   +  + G+    M   SH  E R L   HL  
Sbjct: 140 LGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGLEQRRLDGVHLT- 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHAL 242
              A  +     HL   +  E   +AKA +F+  L + GT  +N DD     ++  + A 
Sbjct: 199 --AAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGAAIRDIAQAR 256

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G +T+ + G S +AD  L   +  +    +    +GK+ +   + IG   A+N+L+  G+
Sbjct: 257 G-QTVLTVG-SGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAENVLLACGL 314

Query: 303 VSILTADVDTAIKALSVF----HPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAI 357
           V I + D     +A  VF    H    RG+    A  + G    +D ++  +     A  
Sbjct: 315 V-IASGD-----EAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPD-----AVA 363

Query: 358 SVLSQISPHGEGRRIAVLG 376
           + L  + PH  GR IA++G
Sbjct: 364 TALQALRPHVMGRLIAIVG 382


>gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 487

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 173/443 (39%), Gaps = 54/443 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   VA R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      +     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDGAAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           PH +GR + + G  C  G+  +     +AEV+       VW++        D  PR    
Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT--------DDNPR---- 405

Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447
             SE    +F  I+   V  D V
Sbjct: 406 --SEAPTNIFDDIRPGFVAADKV 426


>gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O11]
 gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O46]
          Length = 494

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L     
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLT---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326
            I +I+ A          ++T IKA+    P EGR
Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335


>gi|307747707|gb|ADN90977.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 475

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRTNENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E
Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
          Length = 488

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 34/256 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      VA IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSETELSSEHLTVAFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRSAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E  A+AK  +F  L+ T    +N DD          H    +   +
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEI-------GHQWLTELPDA 253

Query: 250 FGKSKNADFQ--LRKW 263
              S NADF+  L +W
Sbjct: 254 IAVSMNADFKVGLHQW 269


>gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. AS9601]
          Length = 511

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 153/392 (39%), Gaps = 40/392 (10%)

Query: 19  IGIVPQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +GI+P        +N IS +S+ +     F  + G + DG  F + A++ GA   ++   
Sbjct: 13  VGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGPA 72

Query: 74  MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129
               IGS+    +  ++D L  +    VA    R   K  +I +TG+ GKTT   +L   
Sbjct: 73  AKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132

Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173
           L  + K  A  G+ +N   G                    A +  + +F I E+    + 
Sbjct: 133 LKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILEVSSHSIA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230
           + R          A+ T +   HL     +E     K ++F      EK G   LN+DD 
Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGICVLNHDDH 250

Query: 231 FFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287
           +   L +  K  +L + T  +  + +N DF     K+ +E  S        + +++    
Sbjct: 251 WISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQLFVPL 310

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDE 344
           +G     N +  + I+  L   +    K +  F    GR ++ +   N   +   T+I +
Sbjct: 311 VGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRSLPTVIVD 370

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P  +K    VL  I    EG+ I V G
Sbjct: 371 -YAHTPDGLK---KVLQSIKKLCEGKLITVFG 398


>gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
          Length = 504

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 27/214 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----- 81
           V G+  DSR +   + F A+KG   DG+ FI  A+++GA  ++  TD   +  +L     
Sbjct: 23  VRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAII--TDSAETFAALRERQP 80

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + V  V+    AL +++ A   R + T+   A+TG+ GKTTT  +L   L S+ +    
Sbjct: 81  ELAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKTTTAFLLEQMLRSVGRKSVL 140

Query: 140 IGSYNNHIG---------VPLT---LARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184
           +G+   HIG          P +   LA     V  G  E+ M   SH  E   +  L  P
Sbjct: 141 MGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVMEMSSHALEQERVWGL--P 198

Query: 185 -HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +A+ T +   HL     +E    AKA IF G+
Sbjct: 199 VDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGV 232


>gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
 gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
          Length = 505

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 44/382 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83
           ++G++  S+ + P   FFA+ G  +DGHDFI  A+Q G+ ++V + DM     ++  + +
Sbjct: 28  ISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRDMDFYSPNVTYIKV 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL------------- 130
             F +   +   + +      + K  +I +TG+ GK++    + + L             
Sbjct: 88  DDFSIRKFMSNFSNVFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTV 146

Query: 131 -------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH---LGEIRFLTH 180
                  S IK  Y      +  I   L+   +   V + I E   SH   L   R +  
Sbjct: 147 FFDDGSGSLIKNPYRQSTPESTEIHAFLS-NMVKNGVQYAILE-STSHGLDLKTARLID- 203

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239
            V    AV T I   HL     I+   + K  +F  + +  G   +N DD +    K   
Sbjct: 204 -VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSEFK--- 259

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +A+     YS  KS  ADF +    +  + +  E   +G       + +G    +N++  
Sbjct: 260 NAVKKSFTYSL-KSSQADFFVSFIDEKIDSTRFEFYYKGVKYFANVNLLGSFNVENVMAA 318

Query: 300 LGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           L +VS IL +D+   +  L      +GR       L Q F  +ID  Y   P +      
Sbjct: 319 LILVSQILNSDIQDIVDKLVCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAFSKLFP 374

Query: 359 VLSQISPHGEGRRIAVLGDMCE 380
           +  + + +   R I+V G   E
Sbjct: 375 IFKRFATN---RLISVFGSAGE 393


>gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
 gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
          Length = 450

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGQVLTAAGQN----GLLSGNIGYPASHVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P H+      E   +AK  I + +   
Sbjct: 162 DTLVMELSSFQLMGIESF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQKNMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---Q 277
             + LN++    + L  K+ A    ++  F   +  D            +++E  L   +
Sbjct: 218 DYLVLNFNQDLAKELAEKTQA----SVVPFSTLEKVD-----------GAYLENGLLYFR 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M     G+ G H  +N L T+ +  I   D +T  + LS F
Sbjct: 263 GEAVMAADEIGVPGSHNVENALATIAVAKIRGVDNETIKETLSAF 307


>gi|237742552|ref|ZP_04573033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
 gi|229430200|gb|EEO40412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
          Length = 454

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 174/426 (40%), Gaps = 60/426 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H DG +F +    K  G+   N   V  +    I +  +D++ 
Sbjct: 54  DKKAMRSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 100

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   +++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 101 IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNHAGYRAAYAGNIGRSLS 153

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P+I++I  + P H+  ++  +E    K 
Sbjct: 154 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKF 209

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270
            I +   +      N DD   E    ++  +  K I S  K K AD  ++  K C  E S
Sbjct: 210 NITKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENS 265

Query: 271 WMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++V +L  K         G H  +N L  +    IL  D +   + L +  P E R + 
Sbjct: 266 IIDVDKLSLK---------GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTEL 316

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +    N G    I++S   N  S K AI              I + G   +  +L+    
Sbjct: 317 F---FNYGKVKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP--- 362

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             LAE++   NI  V+L G     ++  L +   + Y +      + +++SL D      
Sbjct: 363 --LAEMIK-KNIKEVYLIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFT 416

Query: 450 KSSNSC 455
           K SN  
Sbjct: 417 KESNEV 422


>gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 494

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 153/381 (40%), Gaps = 53/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR+I   + F AI G   DG  FI  AV +GA  VV         GS+    +
Sbjct: 27  VEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGSVEWLDA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  V ++   L++LA          +I +TG+ GKTT  +++   L  + +  A +G+
Sbjct: 87  VPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 143 YNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             N                I +  TL+ +  D +     + +S LG ++     +   + 
Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAED-NAVYTAMEISSLGLVQGRVKALDFEVG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKT 246
           V T ++  HL     +EE A AK  +F    K     +N DD   +      S+A+ +  
Sbjct: 206 VFTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEVGKAWMVDLSNAVAVSL 264

Query: 247 IYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +   G      +Q   W           K   + SW + QL   S+ +    IG   A N
Sbjct: 265 LPLSG------YQQSVWTSDVAYAETGIKLAFDGSWGQGQL---SVPL----IGQFNASN 311

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+    +  L  D  T I       P  GR + ++   N+    +    Y   P +++ 
Sbjct: 312 VLVAFATLLSLGIDKQTLIDTAPQLQPVIGRMELFQVP-NKAKVVV---DYAHTPDALEK 367

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A++ L     H  G+  A+ G
Sbjct: 368 ALAAL---RVHCSGKLWAIFG 385


>gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 470

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 35/304 (11%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           LA   RLR   T IA+ G+ GKTTT  +L TI   +       IG   N  G    L + 
Sbjct: 111 LAELMRLR---TGIAVAGTHGKTTTTSLLATIFTEAGLDPTVIIGGRLNAYGAGARLGQ- 166

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                 G + +  +   +  FL   + P  +V+T +   HL +++GIE I  A  E   G
Sbjct: 167 ------GEYLIAEADESDGSFLC--LAPIASVVTNVDADHLDHYAGIEAIDDAFVEFLNG 218

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  DD     L  + +    +   ++G  + A  + R  +  ++  ++ V L
Sbjct: 219 IPFYGVNVVCLDDPGVARLLPRIN----RPFVTYGFGEKARLRGRILETGAKSRFL-VSL 273

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCAL 334
            G+ + E+  +  G H  QN L  +G VS+ T      I +AL+ F    G G+R+    
Sbjct: 274 DGEDLGEMRLNHPGRHNVQNALGAIG-VSLETGIAPAVIAEALAKFG---GVGRRFEIKG 329

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGEL 384
            +    ++D+ Y  +PA ++A ++    +           PH   R  A+ GD C   E 
Sbjct: 330 ERAGVVVVDD-YGHHPAEIRATLATARAVYPDRRLVVAFQPHRFSRTKALFGDFCTCFEA 388

Query: 385 SQSF 388
           + + 
Sbjct: 389 ADTL 392


>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 486

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 181/423 (42%), Gaps = 69/423 (16%)

Query: 11  LQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           L+ +  H IGI  +G    +  I+ DSR + P   FFAI G   DG+ FI  A++KGA  
Sbjct: 3   LKKLLNH-IGISYEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKGAVA 61

Query: 68  VVVNTDMVASIGS--LSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ +   V  + S    +P   V D+    AL           K  +I +TG+ GKTTT 
Sbjct: 62  VISDNAEVVKLYSKKYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKTTTS 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVD--VDFGIF 165
            ++   L+ +    A IG+     G P                  L R  +D  ++F + 
Sbjct: 122 YIIYNVLNKLGHKTAIIGTV--EYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEFVVS 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH  E+  +T  ++   A+ T +   HL     I     +K ++F  L K+ ++ +
Sbjct: 180 EVS-SHGLELHRVTG-IKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLF-FLTKSISV-I 235

Query: 226 NYDDSFFELLKAKSHALGIKTIY-----SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           N DD F ++L       G++ I+     ++G  KN   ++   +     S + ++L+ K 
Sbjct: 236 NIDDPFGKVLS------GLRAIFPCELITYG--KNGKVKIENVENKKFGSEITLRLENKR 287

Query: 281 MEVVHHGIGYHMAQN------MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +  +  G + A N      +L++LG  +    D+  +IK      P    G+      
Sbjct: 288 YVIKTNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKV-----P----GRLEEVVE 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N      ID  Y   P +++  ++VLSQI    +G+ I V G   +     + F   +AE
Sbjct: 339 N----VFID--YAHTPDALEKVLTVLSQIK---KGKLITVFGCGGDRDREKRPFMGKVAE 389

Query: 395 VLS 397
             S
Sbjct: 390 KFS 392


>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 495

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 145/367 (39%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++     AF  IKG   DGH++I  A++ GA LVVV+     S     +   
Sbjct: 33  ITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGARLVVVDEFFDTSKIEGKVDYI 92

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++            +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 93  KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIK 152

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           N IG     A+   P   D           G+  + M   SH  E+ F  +     + V 
Sbjct: 153 NMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 211

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   +AK ++F G+ K   +  N DDS+      K          +
Sbjct: 212 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDSW-----GKRIIEMYPDCVT 263

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  +A    +  K    ++  E+   GK  E+  +  G     N L        L  +
Sbjct: 264 YAKDSDAQVCAKNIKLFVNKNQFEMWYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIE 323

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +DT  K L       GR +      N+ F  +ID  Y   P  +   ++++  +    EG
Sbjct: 324 LDTIKKGLEDLKAVPGRFEIVES--NERFTIVID--YAHTPDGL---LNLMKTVDDVAEG 376

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 377 RKVLLFG 383


>gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 538

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 24/243 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+  +  V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ + D      
Sbjct: 30  GVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAAAVLTDPDGAERAA 89

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTY 137
           +  +PV  VD+  G +  LA         ++  I ITG+ GKTTT  ++   L +  +  
Sbjct: 90  ATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKTTTAYLVDGGLRAAAEKA 149

Query: 138 A-----CIGSYNNHIGVPLTLAR--MPVDVD----FGIFELGMSHLGEIRFLTH---LVR 183
           A      IG+    IG     +    P   D    F +      H   +   +H   L R
Sbjct: 150 AGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERDVHSVVMEVSSHALVLGR 209

Query: 184 P-----HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237
                  +AV   ++P H+   SG+E+   AKA++F +   + G I  NYDD +   L  
Sbjct: 210 VDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAGVI--NYDDEYGRRLIE 267

Query: 238 KSH 240
           +S 
Sbjct: 268 ESE 270


>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 485

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 177/440 (40%), Gaps = 65/440 (14%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L AI  + +  +   +V G+  DSR ++    F  I+G   DGH F   AV  GA  V+ 
Sbjct: 6   LSAILQNEMDDIFDPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVIS 65

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKE 124
              +      L +P   V D      ++A       + R+R    I  +TG+ GKTTT  
Sbjct: 66  EYPL-----DLDVPNVVVADTKQTAGEVASVFYDHPSHRMR----IYGVTGTNGKTTTA- 115

Query: 125 MLTIALSSIKKTYACIGS------YNNHIGVPLT----------LARMPVDVDFGI---- 164
            LT  L  +    A I S      +N  I    T          LA M   VD G+    
Sbjct: 116 TLTYDLLRLSGRRAGIVSTIGARFHNQTIETANTTPEAVVLHRILAEM---VDAGVTDCV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--T 222
            E+    L E R     +  H A  T +   HL     ++E A AKA +FE +E T    
Sbjct: 173 LEVSSHALMEGRVAG--IHFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEA 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I LN +DS   ++ A+        +YS      AD Q+  W+  +    + V+++   +E
Sbjct: 231 IVLNAEDSASHVM-AEFAPTRRAIMYSTTVDVEADVQV-IWRDET----VLVRMKEFKLE 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G   A N+   +G+VS     + T +  +      +GR +R      + +    
Sbjct: 285 VPVRFMGAFNAANLAAAIGLVSTSDMALRTIVSNVPGLTLPKGRLERLATEDAEIYI--- 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P  ++  +S L Q     + R + V+  +   G+   +   D+  + S Y  S
Sbjct: 342 --DYAHTPDGLEKCLSTLQQ-----DDRALVVV--LSAAGDRDPTKRQDMGRIASRY--S 390

Query: 403 HVWLSGFHVLALKDALPRSI 422
           +  +   H + ++D  P+ I
Sbjct: 391 NEVIVTVHDVRMED--PKQI 408


>gi|283957222|ref|ZP_06374684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791294|gb|EFC30101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 475

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E
Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 452

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 22/250 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +      + +  +P  
Sbjct: 35  VTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAVLTDPAGAERVAAAGLPAL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD    + +LA          +  I ITG+ GKTTT  ++   L ++  T   IG+  
Sbjct: 95  VVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLRTVHST-GLIGTVE 153

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G    +   V  H             I V 
Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-TDAVAMEVSSHALVLGRVDGCVFDIGVF 212

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++P H+   S +E+   AKA++F   E+     +N DD +   L AK   + + T YS
Sbjct: 213 TNLSPEHMEFHSDMEDYFRAKAQLFT-PERGRLGVVNADDEYGRRL-AKEAGVPVVT-YS 269

Query: 250 FGKSKNADFQ 259
                +AD++
Sbjct: 270 AEGHPDADWR 279


>gi|157415066|ref|YP_001482322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386030|gb|ABV52345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931213|gb|EFV10185.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 475

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E
Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Azotobacter vinelandii DJ]
 gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
           DJ]
          Length = 487

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 44/383 (11%)

Query: 21  IVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           ++PQ      +  +++DSR + P + F A+ G   DG   I  A+ +GA  V        
Sbjct: 8   LLPQAETALLIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDALARGAAAVAYEAAGAP 67

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSS 132
           S     +P+  +  + G L+  A+A R   + +    ++ +TG+ GKT+  ++L  AL  
Sbjct: 68  SFADGGVPLVPIKGLAGQLS--AIAGRFYGEPSRALCLVGVTGTNGKTSVSQLLAQALDL 125

Query: 133 IKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH----- 185
           + +    IG+  N     L   R   P  +       G+   G  R ++  V  H     
Sbjct: 126 LGERCGIIGTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAG-ARAVSMEVSSHALAQG 184

Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELL 235
                   +A+ T ++  HL     ++   +AKA +F   GL       LN DD F  LL
Sbjct: 185 RVSALDFDVAIFTNLSRDHLDYHGSMDAYGAAKARLFAWPGLR---CRVLNLDDPFGRLL 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG-IGYHMA 293
             +++A  +   YS  +S++A    R+     +    EV   QG+ +  +H   +G    
Sbjct: 242 AGEANASRL-IGYSL-ESRSAQVHCRRAHFDEQGVRAEVATPQGEGL--LHSPLLGRFNL 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  +G +  L   +D  ++ +       GR +R    L  G   L+   Y   P ++
Sbjct: 298 SNLLAVVGALLGLDYALDEILRVVPQLQAPAGRMQR----LGGGAKPLVVVDYAHTPDAL 353

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           +    VL  + PH  GR + + G
Sbjct: 354 E---KVLEALRPHVRGRLLCLFG 373


>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 531

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 112/256 (43%), Gaps = 32/256 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++  S  +A  E F A+KG   DGH +I  A+++GA +VV+   +  + G + +   
Sbjct: 32  VQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERGAAVVVLEDAVEPTPGVVCVQ-- 89

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  +A A         T++ ITG+ GKTTT  +L     +       IG+ N
Sbjct: 90  -VPDTRLALAHMAAAFYDHPSCNLTVVGITGTNGKTTTSYLLEAIWQASGAQVGVIGTVN 148

Query: 145 NHIG-----VPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              G      P+T          LA M    VD  I E+  SH  +++ +   VR    +
Sbjct: 149 CRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDCAIMEVS-SHALDLKRV-QAVRFAAGL 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT----IFLNYDDSFFELLKAKSHALG 243
            T ++  HL     +E   + K+ +F E L   G       +N DD + + L  ++    
Sbjct: 207 FTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDGPQLAVINRDDPWGQKLLPQTS--- 263

Query: 244 IKTIYSFGKSKNADFQ 259
              + ++G +  AD +
Sbjct: 264 -PPVLTYGFAAGADIR 278


>gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK150]
          Length = 459

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IA IT + P HL     +EE A+AK  I + +   
Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAAITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++  + + + +++ A     +  F  ++  D            ++++   +  +
Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----AVVPFSTTEKVD-----------GAYLDGDVLTFR 271

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M+    G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 GEAIMQAAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAF 316


>gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella pealeana ATCC 700345]
 gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC
           700345]
          Length = 488

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 22/220 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSI 83
           I++DSR++     F AI G   DG  FI  A ++GA   +V+TD       V + G L I
Sbjct: 22  ITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQI 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             F ++  + AL   A     +S+  I+ +TG+ GKT+  +++        K  A +G+ 
Sbjct: 82  LFFQLNRQISALAAQAYPLS-QSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGTL 140

Query: 144 NNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            N +             P+TL +    V+        + +S  G ++     V   +AV 
Sbjct: 141 GNGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGRVEAVPFDVAVF 200

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           T ++  HL     +EE   AK  +F+     G + +N DD
Sbjct: 201 TNLSRDHLDFHHTMEEYGIAKKRLFQFANLRGGL-INIDD 239


>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
 gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
          Length = 450

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 28/278 (10%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYN 144
            V   L  L++  + A L  + T I ++GS GKTT   ++T    + KK  +YA IG  N
Sbjct: 83  AVRKQLPMLHRSELLAFLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYA-IGGLN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-I 203
           +     L+L       ++ I E   S      +L     P +AV+T +   HLSNF G  
Sbjct: 142 S-----LSLNGYSGSSEYFIAEADESDGSLKHYL-----PKVAVVTNLDNEHLSNFEGSK 191

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++AS   E    +E     F N D    + LK +          S+G S++   ++  +
Sbjct: 192 EKLASTIEEFTRKVENPRLCFYNGD---CQELKGRISGT------SYGFSQDCHLRIYSY 242

Query: 264 KQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            Q   +S   +   GK  +++  + IG H   N  + +GI   L  D ++  +AL  F  
Sbjct: 243 SQNGWRSLFSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFAG 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + R +R   +    FF    E Y  +P+ +   +  L
Sbjct: 303 IQRRMERKNISEKFLFF----EDYAHHPSEISCTLRGL 336


>gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 513

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 144/363 (39%), Gaps = 37/363 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR +     F AIKG   DG+++I  A+Q+GA +++     + ++G +     
Sbjct: 27  VQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGA-VIIYTEHRITALGVMIKICS 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L  L   A       K  +I ITG+ GKTTT  ++  AL     +   IG+ +  
Sbjct: 86  NARKTLADLCN-AFYDHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVGLIGTLDIK 144

Query: 147 IG--VPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           I      T    P   D   +              E+    L   R   H ++  IA+ T
Sbjct: 145 INNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSER--VHGIKFDIAIHT 202

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK------SHALG 243
            I   HL+    + +   +K ++F+ L       LN DD+   ELL         ++ L 
Sbjct: 203 NIERDHLNYHKNMGDYIRSKKKLFDCLSPGKVALLNLDDNHSLELLTGNNGLIVVTYGLN 262

Query: 244 IK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++   T  S     N  F     +  +  + +EV+       +  + +G H   N L  +
Sbjct: 263 VRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSI--NLLGKHNIYNSLAAI 320

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L    +   K +  F    G  +R      +G +T+ID+ ++ NPAS  A    +
Sbjct: 321 TCCLLLDLSCEEIAKNIKSF---TGVTRRLEVIYKKG-YTVIDD-FSHNPASYGAVFESM 375

Query: 361 SQI 363
             +
Sbjct: 376 QNL 378


>gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 486

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 153/374 (40%), Gaps = 45/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G ++DSR +     F A  G   +G DFI  A+  GA  +V   +         + + 
Sbjct: 26  VLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 76

Query: 87  GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G   ++    +LA   +AAR  +     + A+TG+ GKT+  E+            A IG
Sbjct: 77  GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMIAGHKAASIG 136

Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                    SY+  +  P           LAR   D+   IFE     L + R  +   +
Sbjct: 137 TLGVITAENSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                 T+ +  HL     +E   +AK  +F E +   GT  +  DD   + + A     
Sbjct: 193 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTVIAHVQKR 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+K I   G+   A  +L   +  S+   + + +QG+S ++    IG +   N L+  G+
Sbjct: 253 GLKLI-DIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V     D+   + AL++  P  GR +R   + N G    +D  Y   P  ++AAI  L  
Sbjct: 311 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 365

Query: 363 ISPHGEGRRIAVLG 376
             PH EGR   V G
Sbjct: 366 -RPHTEGRLWVVFG 378


>gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
 gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
          Length = 489

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 147/376 (39%), Gaps = 41/376 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR + P   F A+ G   DG  FI  AVQ GA  V+   D        + P+ 
Sbjct: 23  ISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAAVLAPADTQWPTDVPACPLV 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI--ALSSIKK----TYACI 140
              +   AL  +A          ++AITG+ GKT+T + +    AL   K     T    
Sbjct: 83  LASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFMRQIWALQGFKAAAIGTLGLT 142

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFEL---GMSHL-----------GEIRFLTHLVRPHI 186
           G+    I  P      PV +  G+  L   G  H+           G +  L HL     
Sbjct: 143 GAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEASSHGLEQGRLDGL-HLA---A 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-----AKSHA 241
           A  T +   HL     IE   +AK ++F+ L     I     D   + L+     A    
Sbjct: 199 AGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADMDAQTLQAICAIAARRN 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L ++ +   G +     +L  +        + ++  G++  V+    G   A N+L+ + 
Sbjct: 259 LRLRLVGEHGTT----LRLVAYNALPAGQELTIEHDGRTSTVLLPIPGRFQADNVLLAVA 314

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVL 360
           + +   A++   +  L   H K  RG+  R   L  G    +D ++  +     A   +L
Sbjct: 315 LAAQDNAEITRILPLLP--HLKGVRGRLERATVLPNGACAYVDYAHTPD-----ALARLL 367

Query: 361 SQISPHGEGRRIAVLG 376
           + + PH  G+ I VLG
Sbjct: 368 ASLRPHARGKLIVVLG 383


>gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter heparinus DSM 2366]
 gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 141/372 (37%), Gaps = 43/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +  DSR +    AFFAIKG   DGH +I   V  GAG+V+    + A I    +   
Sbjct: 23  VSALVFDSRQVIKDAAFFAIKGTLADGHTYIAATVSAGAGVVICEV-LPAEIAP-DVTYI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   AL ++A         K  +  ITG+ GKTT   +L     ++      I +  
Sbjct: 81  QVANSAVALGRMAANFYGNPSEKLQLTGITGTNGKTTIATLLFKLFRALGYKVGLISTVE 140

Query: 145 NHIG-----------VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI------ 186
           NHI             PL L  +  D VD G     M         +H V  H       
Sbjct: 141 NHINDEVIPATHTTPDPLALNALLQDMVDAGCDYCFM------EVSSHAVVQHRIEGLSF 194

Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V + I   HL      ++   AK   F+ L  +     N DD    ++   + A   
Sbjct: 195 AGGVFSNITHDHLDFHKTFDQYIKAKKAFFDALPASAFALTNLDDKNGMVMLQNTRA--A 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K  Y+    + ADF+ +      E S+  + L     +V    +G   A N+L   G   
Sbjct: 253 KKTYAL--KQLADFKAK----VIENSFKGLHLDIDDADVFFKLVGSFNAYNLLAVYGTAV 306

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  +    +  LS     EGR      +  Q    ++D  Y   P +++  +S +  I 
Sbjct: 307 LLGQEKLDVLTLLSNLTGAEGRFDYITSS--QHIIGIVD--YAHTPDAVQNVLSTIQDIR 362

Query: 365 PHGEGRRIAVLG 376
             G  + I ++G
Sbjct: 363 -KGTEQVITIIG 373


>gi|139437196|ref|ZP_01771356.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
 gi|133776843|gb|EBA40663.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
          Length = 472

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 120/301 (39%), Gaps = 63/301 (20%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF---GIF 165
           T +A+ G+ GKTTT  M    L                        RM +D  F   GI 
Sbjct: 116 TTVAVAGTHGKTTTSSMCATMLD-----------------------RMGLDPSFLIGGIV 152

Query: 166 E--------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           E              +  +   +  FL   + P++ ++T +   HL ++SGIEEI +  A
Sbjct: 153 EGYDTNGKNGSGDYFVAEADESDSSFL--FLNPNVVIVTNVEADHLDHYSGIEEIEATFA 210

Query: 212 EIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           +    + + GT+ +  +D    EL K+       + + S+G +++ D           QS
Sbjct: 211 KFMSLVGEDGTVIVCGEDPHLVELAKSTG-----RHVLSYGFAESNDIVCMHPDVKGIQS 265

Query: 271 WMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              V+ +  +   V      G H   N    L +  +L  D+D+A KALS F   EG  +
Sbjct: 266 DFIVRFEDGTEHAVEIKSNPGRHNMLNATAVLTVAHVLGFDIDSAAKALSSF---EGVRR 322

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMC 379
           R+    +    T++D+ Y  +P  +KA ++  S +          PH   R  A+  D  
Sbjct: 323 RFTHVGDIDGITVVDD-YGHHPTEIKATLAAASSLGYKHVDVVFQPHRYSRLQALCDDFA 381

Query: 380 E 380
           +
Sbjct: 382 D 382


>gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL J1-023]
          Length = 491

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 152/394 (38%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ GA 
Sbjct: 3   LKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----- 223
              L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +  +     
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235

Query: 224 -FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD     ++  + A     + +FG  + ADF     +  S  S  +++       
Sbjct: 236 AVLNADDKESVRMQTATAA----HVITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFS 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   V  AI  +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAG--QDFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y+  P S+   ++VL  I    E R   V+G
Sbjct: 350 D--YSHTPDSL---LNVLQTIDEFAEKRVFVVVG 378


>gi|86152106|ref|ZP_01070318.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124318|ref|YP_004066322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840891|gb|EAQ58141.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018040|gb|ADT66133.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 475

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E
Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 391

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 13  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 67

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 68  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 127

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 128 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237
             IAV T +   HL      +E    K+ +F  L     TI      LN DD   E  K 
Sbjct: 185 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 243

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 244 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++   
Sbjct: 300 AAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 352

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS I    +G+ I V G
Sbjct: 353 NVLSTIREFAKGKIITVFG 371


>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
 gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
          Length = 450

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGYPASQVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I+       P IAVIT + P H+      E+  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIQEF----HPEIAVITNLMPTHIDYHGSFEDYVAAKWNIQSNMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---Q 277
             + LN++    + L  K++A     +  F   +  D            +++E  L   +
Sbjct: 218 DYLVLNFNQELAKELATKTNA----AVVPFSTLEKVD-----------GAYLEDGLLYFR 262

Query: 278 G-KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G K M     G+ G H  +N L T+ +  +   D +T  + LS F
Sbjct: 263 GEKVMAADEIGVPGSHNVENALATIAVAKLRGVDNETIKETLSAF 307


>gi|205356765|ref|ZP_03223524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345332|gb|EDZ31976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 475

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E
Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes Finland 1988]
 gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes J0161]
 gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
 gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
 gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
 gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
          Length = 491

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +  
Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AIK +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I    E R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378


>gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 505

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 34/252 (13%)

Query: 22  VPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +PQ      VN I++DSR +A    F A+KG   DG  FI  A+Q GA  ++   D +A 
Sbjct: 23  LPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFIDTAIQAGAVAIIAEADGIAQ 82

Query: 78  IGSLSIPVFGVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALS 131
            G + +        L  LN+   A+A R       +  + A+TG+ GKTT  ++L    +
Sbjct: 83  DGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALYAVTGTNGKTTISQLLAQWAN 142

Query: 132 SIKKTYACIGSYNN---------------HIGVPLTLARM-PVDVDFGIFELGMSHL--G 173
            I      +G+  N                I +  TLA +     DF   E+    L  G
Sbjct: 143 LIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGLVEQGADFAAMEVSSHGLVQG 202

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-F 232
            +R L H      ++ T ++  HL     ++  A AK  +F      G   +N DD+   
Sbjct: 203 RVRDL-HF---KASIFTNLSRDHLDYHGNMQNYADAKKSLFTE-HDAGVPIINADDAVGA 257

Query: 233 ELLKAKSHALGI 244
           E L    HA+ +
Sbjct: 258 EWLHDLPHAVAV 269


>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 492

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 146/380 (38%), Gaps = 51/380 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ IDSR I     F  + G +    D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L    S        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGKTTTSYLLEKIFSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNF--- 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLNYDDSFFELLK 236
             IAV T +   HL      +E    K  +F  L       EK   + LN DD   E  K
Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLSTTEKKIAV-LNADDPSVEYFK 252

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             + A     + ++G    AD Q +      +     V      +EV  + +G     N 
Sbjct: 253 KITSA----EVITYGIHNGADVQAKNITLSPKGIHFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +  +    +     + S     EGR +      NQ F  ++D  Y   P +++  
Sbjct: 309 LAAITVAMVEGIPLTNICDSFSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE-- 362

Query: 357 ISVLSQISPHGEGRRIAVLG 376
            +VLS IS   +G+ I V G
Sbjct: 363 -NVLSTISEFSKGKVITVFG 381


>gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG
           19424]
 gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 171/433 (39%), Gaps = 61/433 (14%)

Query: 53  GHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA  VVV+T +      V +  S  IPV     +L  L +L        
Sbjct: 56  GHD---AANVSGANAVVVSTAVSGDNPEVLAARSQRIPVVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               +AI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G 
Sbjct: 108 ----VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GD 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           F +  +   +  FL     P I VIT I   H+  +      +  A  E  + L   G  
Sbjct: 156 FIVAEADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIA 213

Query: 224 FLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS 280
            L  DD +  E+L   S     K +  +G +++A  +    +    Q    V  QL G +
Sbjct: 214 VLCVDDPNVREILPFVS-----KPVVRYGFAEDAQIRAVDARAVDGQMHFTVLRQLNGHT 268

Query: 281 ---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCAL 334
              +E+V +  G H  QN L  + I + L       +KAL  FH    R +RY       
Sbjct: 269 EPPLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPD 328

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G FTL+D+ Y  +P  M A ++      P    RR+ +             F  D  +
Sbjct: 329 GAGTFTLVDD-YGHHPVEMAATLAAARGAFPE---RRLVLAFQPHRFTRTRDCFE-DFVK 383

Query: 395 VLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVD 443
           VL   +   +S V+ +G   +   D  AL R++ V       + E M+ +   I +++  
Sbjct: 384 VLGTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILNAVRP 443

Query: 444 GDVVVVKSSNSCG 456
           GDVVV   + S G
Sbjct: 444 GDVVVTMGAGSIG 456


>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
          Length = 492

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 145/381 (38%), Gaps = 53/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ +
Sbjct: 23  ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEM 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHL 181
             NN + V             P TL R        + D+ + E+     H+  ++     
Sbjct: 138 --NNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF- 194

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELL 235
               IAV T +   HL       E    K  +F  L             LN DD   E  
Sbjct: 195 ---KIAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF 251

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           K  + A     + ++G    AD Q +      +     V      +EV  + +G     N
Sbjct: 252 KKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNVYN 307

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++ 
Sbjct: 308 ALAAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE- 362

Query: 356 AISVLSQISPHGEGRRIAVLG 376
             +VLS IS   +G+ I V G
Sbjct: 363 --NVLSTISEFSKGKVITVFG 381


>gi|313895810|ref|ZP_07829364.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975235|gb|EFR40696.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 141

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G +T I+++YNA+PASM+AA+   +++ P   GRRIAVLGDM E+G  S   H  +    
Sbjct: 9   GAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGAASAEGHRSVGRTA 65

Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +    + V   G     + +A   +     ++ T +     ++  L DGD V+ K S
Sbjct: 66  AAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLADGDTVLFKGS 122


>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
 gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
          Length = 483

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 45/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85
           +  ++IDSR I     F A++G   DGH FI  A+++GA  ++  T       G   I V
Sbjct: 23  IAAVNIDSRRIGKGHLFIAMRGTQVDGHRFIPKAIEQGASAILCETIPEQQKAGVTYIVV 82

Query: 86  FGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--- 139
              +D  G +  +     + RL+    ++ +TG+ GKTT   +L       K  Y C   
Sbjct: 83  SSTEDAAGKVATIFYGNPSMRLK----LVGVTGTNGKTTVATLLYNMFR--KFGYKCGLL 136

Query: 140 --IGSYNNHIGVPLT------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             + +Y     VP              L RM       +F    SH    + ++ L   H
Sbjct: 137 STVCNYIEEEAVPADHTTPDPIALNQLLHRMAESGCEYVFMECSSHAIAQKRISGL---H 193

Query: 186 IA--VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +  + T +   HL      +   +AK   F+ L K+     N DD     +     A  
Sbjct: 194 FSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSLPKSSFAITNADDKNGMYMVQNCKA-- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             TI ++     ADF+ +  +   E  ++E+       EV    IG     N+L   G  
Sbjct: 252 --TIKTYSLRNMADFKAKILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGTA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  + A+S      GR +  R    +G   ++D  Y   P ++   ++ + ++
Sbjct: 306 MMLGKQPEDILLAMSTLKSVSGRLEPIRS--QEGVTAVVD--YAHTPDALANVLNAIHEV 361

Query: 364 SPHGEGRRIAVLG 376
              G+G+ I V G
Sbjct: 362 L-DGKGKVITVCG 373


>gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
 gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
          Length = 493

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 29/245 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------ 81
           N +++DSR++ P + F AI G   DG  +I  AVQ+GA   +V+TD   S G        
Sbjct: 20  NKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASLVHTDDPESHGKCVDDEGK 79

Query: 82  SIPVFGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            I  F ++  L AL   A    A RL+    ++ +TG+ GKT+  +++   ++ + K  A
Sbjct: 80  QILFFQLNRQLSALAAQAYPLSAERLK----LVGVTGTNGKTSITQLMAQLVTLLGKQSA 135

Query: 139 CIGSYNNHI-----------GVPLTLARMPVDVDFGIFEL---GMSHLGEIRFLTHLVRP 184
            +G+  N +              +T+     + D    EL    +S  G I+     V  
Sbjct: 136 VMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEVSSHGLIQGRVEAVPF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV T ++  HL     ++    AK  +F       +  +N DD   +   A+ H  G 
Sbjct: 196 DVAVFTNLSRDHLDYHGTMQAYGDAKKRLFN-FPSLSSGLINLDDEIGKQWLAE-HDTGK 253

Query: 245 KTIYS 249
            T +S
Sbjct: 254 YTSFS 258


>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 501

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 42/387 (10%)

Query: 16  GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           GH +   P   +  + G+  DSR + P + + A+ G  + G DF   A  +GA  V + +
Sbjct: 26  GHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEATARGA--VAMLS 83

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIAL 130
           D  + I    +P   VDD   AL  LA  A     +   +  +TG+ GKT+T  +L  AL
Sbjct: 84  DRPSDI----VPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNGKTSTVYLLEAAL 139

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGM---SH-LGE 174
            +   +T    G      G      R   +           V+ G+  + M   SH L E
Sbjct: 140 VAAGLRTGVVTGVTVRGPGTVRPATRTTPEACELQQSFVEFVEEGVDAVAMEVSSHGLAE 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFE 233
            R      R  + V T +A  HL     +E   +AKA +FE  L +   + +  DD +  
Sbjct: 200 HRIDGS--RFDVGVFTNLARDHLDYHPDMEAYYAAKARLFERDLCERAAVCI--DDDYGR 255

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L A+   + +  +    +   AD      +     S   +  +G+ + V    +G H  
Sbjct: 256 RLAAE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVRLRVLGGHQV 312

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  L  +S+   D+  A+  +       GR +  R  + Q F  L+D  Y  N A  
Sbjct: 313 DNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE--RVDVGQPFLALVD--YVHNTAGQ 368

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCE 380
                 L  ++P   GR + VLG   E
Sbjct: 369 HRLFPYLRSVTP---GRIVVVLGATGE 392


>gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
 gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
          Length = 496

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 158/383 (41%), Gaps = 56/383 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +++DSR +     F A+ G    G +FI +A++ GAG V+ +    A+   ++  V 
Sbjct: 26  VTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGAGAVLTD----AAGAKIAADVL 81

Query: 87  GVDDVLGALNKLAVAARLR-------------SKATIIAITGSVGKTT----TKEMLT-I 128
           G     GA   L VA   R                T++A+TG+ GKT+    T+++   +
Sbjct: 82  G-----GADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTSVATFTRQIWQEL 136

Query: 129 ALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDFGIFELGMSH---------LGE 174
            L ++   T    G +   +      P+TL RM      G  E G++H         L +
Sbjct: 137 GLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLA----GAAESGVTHAAMEASSHGLSQ 192

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE 233
            R     V+   A  T     HL   +  E+  +AKA +F   L + G   +N DD    
Sbjct: 193 RRL--DGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINIDDPRGV 250

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            + A + A G + + + G+ + AD  L   +  +    + +  +G+  +     IG   A
Sbjct: 251 DMVAIARARG-QEVLTVGR-EAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIGGFQA 308

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L+  G+V     D D     L +     GR  +     + G    +D  Y   P ++
Sbjct: 309 DNVLLAAGLVIACGGDPDDVFDVLPMLGTVRGR-MQLAAMRDNGAAVFVD--YAHTPDAV 365

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
             AI  L    PH  GR +A++G
Sbjct: 366 ATAIKAL---RPHVMGRLVAIVG 385


>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes EGD-e]
 gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-561]
 gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
          Length = 491

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +  
Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AIK +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I    E R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378


>gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
 gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
          Length = 495

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 45/265 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  DSR + P + F  + G   DGHD+   AV  GA  +VV  ++      + +P   
Sbjct: 24  RGIGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASGAAALVVEREL-----DVPVPQLV 78

Query: 88  VDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEML--------------- 126
           V D   A+  LA       + R+R    +I ITG+ GKTT   ++               
Sbjct: 79  VKDARHAMAVLADYMFDSPSRRMR----MIGITGTNGKTTITYLIEKIMQDAGVNTGLIG 134

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185
           TI +    ++Y   G+    + +   L  M    V   + E+    L + R      R  
Sbjct: 135 TIQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGRVKGTDFR-- 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKA 237
            A+ T +   HL   + +EE  +AK  +F  L          +    LN DD     L+A
Sbjct: 193 TAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNSKYAVLNADDPASSYLQA 252

Query: 238 KSHALGIKTIYSFGKSKNADFQLRK 262
           ++ A     + ++G  K++D Q  +
Sbjct: 253 QTAA----QVITYGVEKDSDVQASR 273


>gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
 gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
          Length = 514

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 41/305 (13%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA---SIGSLSIPV 85
           G++ DSR +  +  FFA+ G H+DG  FI  A+Q+G+ ++V   D+ +   ++  + I  
Sbjct: 39  GLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQGSNVIVHTNDIDSYDPNVTYIKIDA 98

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             +   +   + +      + K  II +TG+ GK++    +   L S+      I +   
Sbjct: 99  CNIKRFMSNFSHIFYDEPSK-KLKIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFF 157

Query: 146 HIG------------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL-VRPH 185
             G                  + L L++M   +V++ I E   SH  + R    + +   
Sbjct: 158 EDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVE-STSHGLDARTSRLIDISYS 216

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGI 244
           +AV+T I+  HL     ++   +AK  +F   +  G    +N DD+ F +         I
Sbjct: 217 VAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIVNMDDNNFSVFLN-----AI 271

Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             +Y++  ++KNADF + K  +         Q+     E  H  + Y    N+  +  + 
Sbjct: 272 NRVYTYSLENKNADFFVSKINE---------QMGFIEFEFYHKDVKYDARVNLTGSFNVE 322

Query: 304 SILTA 308
           +++ A
Sbjct: 323 NVMAA 327


>gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
 gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
          Length = 493

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 25/224 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I     F AIKG   DG  FI  A+ +GA  V+  +      G  S    
Sbjct: 27  ISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIAQSCERHPQGVCSTESR 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  +D +   L+ LA          ++ +TG+ GKTT  +++   L+ + K  A +G+
Sbjct: 87  VPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQIIAQWLNLVGKRAAVLGT 146

Query: 143 YN-----------NHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186
                        N  G  + + +  V +     DF   E+    L + R  T    P  
Sbjct: 147 AGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSHGLVQGRVKT---LPFA 203

Query: 187 A-VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           A V T ++  HL     +EE   AK  +F    + G   +N DD
Sbjct: 204 AGVFTNLSRDHLDYHGTMEEYELAKRSLFTE-HQCGKAIINVDD 246


>gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 486

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 506

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 117/299 (39%), Gaps = 37/299 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR I P E F A+ G H  G D+I  A+ KGA  VV      AS   L  P     
Sbjct: 33  VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAP----ASARDLVAPAVEKR 88

Query: 90  DVLGALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +    +  AVA  L ++A          ++ ITG+ GKTTT  ++   L++       +
Sbjct: 89  ALAVYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVL 148

Query: 141 GSYNNH-----IGVPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N       +  PLT          L  M   DVD  + E+    L + R     +  
Sbjct: 149 GTVNYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAG--LDF 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKS---- 239
             AV+T +   HL     +E    AK  +F    + G    +N++D +   L   +    
Sbjct: 207 DAAVLTNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGI 266

Query: 240 -HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + +G  ++ +         Q R      +   +E   +GKS  V    IG   A N+L
Sbjct: 267 GYGIGDSSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLL 325


>gi|57167794|ref|ZP_00366934.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli
           RM2228]
 gi|57020916|gb|EAL57580.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli
           RM2228]
          Length = 475

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 50/316 (15%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +S+ +F +   L   NK     +   +  II IT S GKT+ K  L   L    KTY   
Sbjct: 128 ISLKIFELFSNLYFKNKAKAKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTP 187

Query: 141 GSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            S N  +G+   +   +  D    I E G    G+I  +T  + P I ++  I  AHL  
Sbjct: 188 RSVNTLLGIIADINTNLSDDTQIYIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEY 247

Query: 200 FSGIEEIASAKAEIFEG--LEK----TGT------IFLNYDDSFFELLKAKSHALGIKTI 247
           F  IE     K E      LEK    T T      + L YDD   +L   +S   G++  
Sbjct: 248 FKNIENTRKTKLEALNSKRLEKAFLHTSTQKSEDELILLYDD---KLQDIQSSLQGLE-- 302

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                                    ++ L+ K+ E     +G   AQN+   +   + L 
Sbjct: 303 ------------------------FKINLENKTYEFKSQILGDFNAQNLCACILCANYLG 338

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++   K +   +  E R +     +++    +ID+S+N N   M A+     ++  + 
Sbjct: 339 VKIEKIQKQVLKINSVEHRLQ----IISKEPKFIIDDSFNGNYKGMSAS----YKLCKNY 390

Query: 368 EGRRIAVLGDMCEMGE 383
           +GR++ V   + E+ +
Sbjct: 391 KGRKVLVSPGIVEVDK 406


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 54/322 (16%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T +      V +   L IP          L++  + A L ++   IA+ GS
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEI 175
            GKTTT  M+ + L              + +GV  T+      V   + +LG  + LG  
Sbjct: 121 HGKTTTTSMIGVTL--------------DRVGVSPTII-----VGGEVPDLGTNAKLGTS 161

Query: 176 RFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           R+L             +RPHIAV+T +   H+ ++  +E+I +A  +  E ++  GT  L
Sbjct: 162 RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIAAFRQFIEQVDTDGTAVL 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            +++   E+L+  +     K + S+     AD++    +         V  +G  M  V 
Sbjct: 222 CFEN---EILRNIARETAHKVV-SYAIDHEADYRASNIETRGSVISFSVHERGTEMGRVL 277

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I G H   N L  + +  +   +      AL+ FH   G  +R++    +    ++D+
Sbjct: 278 LNIPGRHNVLNALACIAVARLAGVEFPAICDALAQFH---GAKRRFQTKGKERGVWVVDD 334

Query: 345 SYNANPASMKAAISVLSQISPH 366
            Y  +P  +   ++   Q +P 
Sbjct: 335 -YAHHPTEIAVTLAAARQTNPE 355


>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
           str. Sterne]
 gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
          Length = 401

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237
             IAV T +   HL      +E    K+ +F  L     TI      LN DD   E  K 
Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 253

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 254 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++   
Sbjct: 310 AAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 362

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS I    +G+ I V G
Sbjct: 363 NVLSTIREFAKGKIITVFG 381


>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
 gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
          Length = 450

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELARKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIVVAKLRGVDNQTIKETLSAF 307


>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 485

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 150/366 (40%), Gaps = 38/366 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++    
Sbjct: 22  DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEM---KHNVSYIL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IGTIEY 136

Query: 146 HIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            IG  V   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVIMEVSSHSLEIGRVEVLDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD + + L      +    I S
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRL-YDEFIVDNPEIIS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G  +N D +       S+  +++V+ + +  +V    +G     N L  +GI   +   
Sbjct: 254 YG-IENGDLE----GDYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGIALKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I     G
Sbjct: 309 MEEILKRVSNIKAAPGRFEALDCG--QDYKVIVD--YAHTPDALVNVIVAARNIK---NG 361

Query: 370 RRIAVL 375
            RI  +
Sbjct: 362 SRIITI 367


>gi|325128839|gb|EGC51698.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           N1568]
          Length = 469

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++VIT I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVITNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 448 LNMGAGSIN--RVPAALLE 464


>gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum H04402 065]
          Length = 483

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 144/370 (38%), Gaps = 36/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  ++            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186
           N+IG          P  + L ++  D     VD+ + E+    L    +L  +  V    
Sbjct: 142 NYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           ++ T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K 
Sbjct: 198 SIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKI 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y  G  KN D +       S     +   + +   +  +  G +   N L ++G   + 
Sbjct: 253 TY--GLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLE 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              + T  +AL       GR +      N G+  ++D  Y   P  ++   ++L+     
Sbjct: 311 GIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREF 365

Query: 367 GEGRRIAVLG 376
            +GR I+V G
Sbjct: 366 TKGRLISVYG 375


>gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
 gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
          Length = 457

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 33/294 (11%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           LA   RLR   T IA+ G+ GKTTT  +L TI   +       IG   N  G    L + 
Sbjct: 98  LAELMRLR---TGIAVAGTHGKTTTTSLLATIFTEAGYDPTVIIGGRLNAYGAGARLGQ- 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                 G + +  +   +  FL   + P  +V+T +   HL ++ GIE I  A  +    
Sbjct: 154 ------GEYLIAEADESDGSFLC--LSPIASVVTNVDADHLDHYDGIEAIDDAFVDFLNN 205

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  DD     +  + +    + I ++G S  A  + R     +  S  EV L
Sbjct: 206 IPFYGVNVVCLDDPGVARILPRVN----RPILTYGFSDKARLRGRIIDSGA-MSCFEVSL 260

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            GK + E+  +  G H   N L  +G+   +   + T  +AL+ F    G G+R+     
Sbjct: 261 DGKRLGEMRLNHPGRHNVLNALGAIGVSLEVGIPLGTIAEALAKF---AGVGRRFERKGE 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMC 379
           +    ++D+ Y  +PA +KA ++    +           PH   R  A+ GD C
Sbjct: 318 KDGVVVVDD-YGHHPAEIKATLATARAVYPERRLVVAFQPHRFSRTKALFGDFC 370


>gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA2]
          Length = 499

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +  R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188
             + G  L  AR     P   D  G+F   M+  G    +  +    +A+          
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 194

Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K
Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +    + +D+Q+  W+     +  +V
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280


>gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 484

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 125/321 (38%), Gaps = 36/321 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I  DSR + P   F A++G   DGH++I  A++ GA  +V       +IG ++  + 
Sbjct: 24  ISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAVAIVCEDLPAHTIGEVAFMM- 82

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL ++A         K  ++ +TG+ GKTT   +L      +      + +  
Sbjct: 83  -VADSAVALGQIAANFYDHPSDKLKLVGVTGTNGKTTVATLLYQLFHDLGYKCGLLSTVE 141

Query: 145 NHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189
           N I    +P T    P  V        M + G +  F+   +H V  H          + 
Sbjct: 142 NQINGKVIPATHT-TPDQVVLNSLLNDMVNQGCDYCFMEVSSHAVAQHRIEGLQFSGGIF 200

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIK 245
           T +   HL      +    AK   F+ L K+     N DD       +  +A+     +K
Sbjct: 201 TNLTHDHLDYHKTFDNYLKAKKAFFDALPKSAFALTNIDDRNGNIMLQNTRAQRKTYALK 260

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++        AD++ +      E  +  + L   + EV    +G   A N+L   G   +
Sbjct: 261 SL--------ADYKAK----ILENQFGGLLLDIDNEEVWFKMVGSFNAYNLLAVYGAARL 308

Query: 306 LTADVDTAIKALSVFHPKEGR 326
           L  D    + +LS     EGR
Sbjct: 309 LGQDKTKVLTSLSKLKGAEGR 329


>gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
 gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
          Length = 452

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 31/239 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD 90
           +DSR   P  A      P     D +L      A L+     +V S G +LS P   V  
Sbjct: 40  MDSREFPPGLAALQEHNP-----DVVLRLGGFDAALIAEAEQLVVSPGVALSEPAIQVAQ 94

Query: 91  -----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                V+G +   A  A    KA +I ITGS GK+T   +L +      K     G    
Sbjct: 95  ARGIPVIGDIELFASYA----KAPVIGITGSNGKSTVTSLLEMMARQAGKQVLAGG---- 146

Query: 146 HIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           ++G+P L L   PV  D  I EL    L E  +  + V    A +  I+P H+  +  ++
Sbjct: 147 NLGLPALELLEKPVP-DLYILELSSFQL-ETTYTLNTV---AACVLNISPDHMDRYPDLD 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
               AKA I+ G   TGT+ +N DD F     A+ H   ++  ++ G   N ++ LR++
Sbjct: 202 AYFQAKARIYRG---TGTMIINTDD-FRVASLAQPHRSCLR--FTLGNPNNNEYGLREY 254


>gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 256

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 25/217 (11%)

Query: 23  PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           P G   ++G+S DSR +AP  AF A+ G   DG  FI+ A  +GA + + +  + A    
Sbjct: 41  PAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIVDAAGRGAAVAIASQPVDA---- 96

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134
            SIPV  V +    L+  A     R   T++A+TG+ GKT+    T+++   A   +++ 
Sbjct: 97  -SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155

Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRP 184
            T   +    N  G      P++L ++  ++ D G+    M   SH L + R     V+ 
Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKL 213

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             A  T +   H+     +E   +AK  +F+ L   G
Sbjct: 214 AAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLPKG 250


>gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL074PA1]
 gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA2]
 gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA1]
 gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA2]
 gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA1]
 gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA2]
 gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA1]
 gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA2]
 gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL007PA1]
 gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL056PA1]
 gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA3]
 gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA2]
 gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA1]
 gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA1]
 gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL045PA1]
 gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA2]
 gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA1]
 gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA2]
 gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA3]
 gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL078PA1]
 gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA2]
 gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA3]
 gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA1]
 gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL038PA1]
 gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL097PA1]
 gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA2]
 gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA2]
 gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA1]
 gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL020PA1]
 gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 499

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +  R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188
             + G  L  AR     P   D  G+F   M+  G    +  +    +A+          
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 194

Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K
Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +    + +D+Q+  W+     +  +V
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280


>gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
 gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
          Length = 492

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 163/397 (41%), Gaps = 43/397 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +LL   Q  ++GI P    +G++ DSR + P + F A  G   DG  +I  A+ +
Sbjct: 1   MTTPRELLD--QLAAMGIQP----SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALAR 54

Query: 64  GAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  V+     +    +++ + ++PV  +  + G L   AV        ++IAITG+ GK
Sbjct: 55  GAVAVLWQPSADFSWDSTLATANLPVAALRPLAGPLAH-AVYGHPSEGLSLIAITGTNGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVP-------------LTLARMPVDV---DFG 163
           TT  + +  A     K  A IG+     G P              TL R   D    +  
Sbjct: 114 TTISQCIAQAY---PKPCAIIGTLG--AGFPDSLIETGFTTPEATTLMRYLADFRARNAA 168

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              L  S +G      +  R  +A+ T     HL     +E  A AK ++F    +  T 
Sbjct: 169 ACALEASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFH-WPRLRTA 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKS 280
            +N DD F   L  ++ A+ +   Y+ G+++     L + +   +  +     + L    
Sbjct: 228 IINLDDEFGLNLMRETTAMRVLG-YAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGR 286

Query: 281 MEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + V    +G +   N+L    ++     A  D AI+ LS   P  GR +R    L     
Sbjct: 287 VAVDTTLVGRYNISNLLAVAAVLHDAGLAAADVAIR-LSELTPPPGRMER----LGGNGE 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            L+   Y   P +++ A++ L  ++    GR   V G
Sbjct: 342 PLVVVDYAHTPDALENALTALRDVATTRAGRLSVVFG 378


>gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 476

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+ I   S  I     + G+S +S+ I     F AI+G  +DGH +I +A++ GA  +V
Sbjct: 6   ILKEISYISKNIQNDKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENGASTIV 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLT 127
              D V       I    V+D   AL K++   +   SK+  +I +TG+ GKTTT  +++
Sbjct: 66  YTNDDVEFKN--EINYIKVEDARLALAKISNFLSDFPSKSLRMIGVTGTNGKTTTANIVS 123

Query: 128 IALSSIKKTYACIGS 142
             L+ + +T A IG+
Sbjct: 124 FLLNKLGETCANIGT 138


>gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
 gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
          Length = 493

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 32/388 (8%)

Query: 12  QAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           QA+   S+G+  +G  N    GIS+DSR + P   F A+ G    G +FI +A+  GA  
Sbjct: 4   QAVPLSSLGLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVA 63

Query: 68  VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ + +       ++    + +   D    AL++ A         T+IA+TG+ GKT+  
Sbjct: 64  VLTDAEGAKLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVS 123

Query: 124 EM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDF-GIFELGM--- 169
                  + + L+++   T    G++   +      P+TL R   +    GI    M   
Sbjct: 124 TFVRQIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEAS 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD 228
           SH  + R L   V    A  T     HL      +    AKA +F   L + GT  +N D
Sbjct: 184 SHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINID 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     + A + A G + I + G+    D  L   +  +    +    +GK+ +   + I
Sbjct: 243 DPKGVDMVAIARARGCEVI-TVGRD-GGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLI 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L+  G+V    AD       L       GR  +     + G    +D ++  
Sbjct: 301 GGFQADNVLLAAGLVIACGADPAHVFDTLPHLTTVRGR-MQLAATRDNGGAVFVDYAHTP 359

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
           +     A  + L  + PH  GR +A++G
Sbjct: 360 D-----AIATALQAMRPHVMGRLVAIVG 382


>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 537

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 158/396 (39%), Gaps = 50/396 (12%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S+ + P   F A+ G   DGHDF+  A++KGA  +VV    V      SI +  V++   
Sbjct: 60  SQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKKTVKD----SI-IIEVENTRK 114

Query: 94  ALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148
           AL ++A         K  II ITG+ GKTTT  ++   L +       IG+ N       
Sbjct: 115 ALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGFKTGVIGTINCRYSGKT 174

Query: 149 --VPLT----------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
              P+T          L+ M +D V   + E+    +   R          AV T +   
Sbjct: 175 FPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDLFRIEGCFFDS--AVFTNLTQD 232

Query: 196 HLSNFSGIEEIASAKAEIF-EGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           HL     +E   + K ++F E L      EK  T+ +N DD   E  KA S  L  K I 
Sbjct: 233 HLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTV-INCDD---ERGKALSGILSTKCIK 288

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---I 305
           + G     D      +  +      +     +  +    +G H  +N++   G+ S   I
Sbjct: 289 T-GSDSECDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNIENIMSAAGVASGLGI 347

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            +  +   IK+LSV       G+  +     G    +D  Y   P ++K   +VL  + P
Sbjct: 348 SSEIIKKGIKSLSVIP-----GRLEKINNEAGISVYVD--YAHTPDALK---NVLLSLRP 397

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             +GR I V G   +  +  +    +LA  LS + +
Sbjct: 398 IVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAV 433


>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
          Length = 493

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 145/382 (37%), Gaps = 55/382 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  ++   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP- 184
           +    +G            P TL R        + D+ + E+    L       H+ R  
Sbjct: 138 NNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL-------HMERVK 190

Query: 185 ----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFEL 234
                IAV T +   HL      +E    K+ +F  L             LN DD   E 
Sbjct: 191 GCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLSTTDKKIAVLNADDPSVEY 250

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            K  + A     + ++G    AD Q +      +     V      +EV  + +G     
Sbjct: 251 FKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVY 306

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++
Sbjct: 307 NALAAITVALVEGIPLTNISDSLSTLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE 362

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
              +VLS IS   +G+ I V G
Sbjct: 363 ---NVLSTISEFSKGKVITVFG 381


>gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
 gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
          Length = 488

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 40/265 (15%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      VA IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGLRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTKLPDAIAV---- 256

Query: 249 SFGKSKNADFQLRKWKQCSEQSWME 273
               S NADF++          WM+
Sbjct: 257 ----SMNADFKV------GSHQWMK 271


>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 486

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 140/375 (37%), Gaps = 49/375 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR +     F A++G   DGH FI   +QKGA  VV   ++     +    + 
Sbjct: 23  VTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKGATAVVCE-ELPEIESTADCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  +A        SK  ++ +TG+ GKTTT  +L      +      + +  
Sbjct: 82  QVKDSAEALGMIASNFYDSPSSKLKLVGVTGTNGKTTTVTLLYRLFRKLGYKTGLLSTVE 141

Query: 145 NHIGVPLTLA--RMPVDVDFGIFELGMSHLGEIRFLTHL---VRPHIAV----------- 188
           N I   +  A    P  +        M   G     TH    V  H AV           
Sbjct: 142 NIIEDKVVQATHTTPDAISLNKLLADMVKAG----CTHCFMEVSSHAAVQRRIAGLQFAG 197

Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              + I   HL      +E   AK   F+GL       +N DD    ++   + A   KT
Sbjct: 198 GLFSNITHDHLDYHKTFDEYIKAKKLFFDGLPNDSFALINSDDKRGRVMIQNTRA---KT 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGYHMAQNMLMTLG 301
            Y++     ADF+ +          +   +QG  M+V         IG   A N+L    
Sbjct: 255 -YTYSLLALADFKGK---------LISTTMQGLEMDVDGIQAWFRLIGNFNAYNLLAVYA 304

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  D +  +  LS      G   R+   ++    T+I + Y   P ++K  +  ++
Sbjct: 305 TAVLLGEDKEEVLMQLSTIEAANG---RFEQQISATRITVIVD-YAHTPDALKNVLETIT 360

Query: 362 QISPHGEGRRIAVLG 376
           ++   G  + I V+G
Sbjct: 361 EL--KGANKIITVVG 373


>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-003]
          Length = 491

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +  
Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AIK +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I    E R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378


>gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA1]
 gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA2]
 gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA1]
 gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL086PA1]
 gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA1]
 gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA2]
 gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA1]
 gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL092PA1]
          Length = 499

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +  R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188
             + G  L  AR     P   D  G+F   M+  G    +  +    +A+          
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLEGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 194

Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K
Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +    + +D+Q+  W+     +  +V
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280


>gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
 gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
          Length = 483

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 27/248 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +    AFFA+ G   DG  +   A  +GA +VV           +S+P+ 
Sbjct: 20  IAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVVAP-----RAAEVSLPLV 74

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSY 143
            V DV  +L   A     R    + A+TG+ GK++  + L    IAL     +   IG  
Sbjct: 75  VVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQIWIALGREAASLGTIGLI 134

Query: 144 NN---HIGVPLTLARMPVDVDFGIFEL---GMSHLG--------EIRFLTHLVRPHIAVI 189
           +    H G   T    PV +   + EL   G++HL         + R L   VR  +   
Sbjct: 135 DKSGAHYGALTTPG--PVALHQTLDELCAGGVTHLAMEASSLGIDQRRLDG-VRLCVGAF 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIY 248
           T  +  HL +   +EE  +AK  +F+ L +TG T  ++ D +  E + A   A G+  ++
Sbjct: 192 TNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAERVAAVCAARGL-ALF 250

Query: 249 SFGKSKNA 256
             G    A
Sbjct: 251 DVGAKGRA 258


>gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
 gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
          Length = 494

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 151/382 (39%), Gaps = 56/382 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLS 82
           ++G+  DSR +   +AF A+ G H     +I  A++ GA ++++ ++         G+L 
Sbjct: 24  IHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESEQAGECSERSGALI 83

Query: 83  IPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +PV  +   LG L     A R       +  ++ +TG+ GKT+  + +   L +      
Sbjct: 84  VPVPELKVRLGKL-----ADRFFEYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCG 138

Query: 139 CIGSYNNHIGVPLTLARMPVD-----------VDFGIFELG--------MSHL---GEIR 176
            +G+     G+P TL   P             V  GI   G         SH    G I 
Sbjct: 139 VLGTLG--YGMPETL--QPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRID 194

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT       AV T +   HL     +     AKA++F   E+   + +N DD F   L 
Sbjct: 195 RLTLTA----AVFTNLTRDHLDYHGSMAAYGEAKAKLFS-REELRFVVINVDDPFGRKLY 249

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQ 294
            +      +  +S  + + A+  L+++  C+  +     L G+  E       +G   A 
Sbjct: 250 HQLEGKCDRLRFSLHEPQ-AELWLKEF--CALDNGFRAVLDGRWGEFTIEAPLMGRFNAS 306

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  +  V  L  DV      +    P  GR + +      G   ++D  Y   P ++ 
Sbjct: 307 NVLAAVATVMALGVDVTQVQHGVRRLVPPAGRLQVF--TAGDGARAVVD--YAHTPDALN 362

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
            A++ L    PH  GR I V G
Sbjct: 363 NALAAL---RPHVSGRLICVFG 381


>gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 487

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 148/373 (39%), Gaps = 38/373 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G + DG   I  A+++GA  V    +  + +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAVAYEVEGSSVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   VA R     +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IPVKGLAAQLSD--VAGRFYGDPSRSLNMVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATAIAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E   +AKA++F          +N DD F   L    H    
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYGAAKAKLF-AWPNLNCRVINLDDEFGRKLATLKHE--- 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIV 303
             + ++ +  +A +   +  +  +       +  +    +    +G     N+L  +G +
Sbjct: 248 SRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHFLRSALLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R    L      L+   Y   P +++    VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQR----LGGASKPLVVVDYAHTPDALE---KVLEAL 360

Query: 364 SPHGEGRRIAVLG 376
            PH +GR + + G
Sbjct: 361 RPHAKGRLLCLFG 373


>gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 478

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 129/323 (39%), Gaps = 45/323 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I     F AI G  +DGH FI  A+  GA  +VV  D V  I    I   
Sbjct: 23  ITNVTNDSRKIKKGGVFVAISGMEFDGHRFIDKAIANGANTIVVTED-VTEID--DINYI 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL +++  V      K  +I +TG+ GKTTT  M++  L  +      IG+  
Sbjct: 80  KVKDSRVALAQISNVVCDFPSKKLRVIGVTGTNGKTTTASMISHILEHLNSPCTNIGTNG 139

Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183
             I       P T         + ++ V+  +D  + E     L +  L  I F      
Sbjct: 140 TFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVECSSHGLYLHRLDGIDF------ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV   ++  H+     +E    AK  +FE  +K      N DD +    KA+     
Sbjct: 194 -DVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  Y+F     +DF+    +    +   E+    K+++ V +        N +  +  V
Sbjct: 245 FEDAYTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNSVAAIVAV 300

Query: 304 SILTADVDTAIKALSVFHPKEGR 326
           ++L  ++    K+L  F   E R
Sbjct: 301 NLLGYELKDIAKSLESFTGVEAR 323


>gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
 gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
          Length = 501

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 33/230 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVA--------S 77
           +++DSR +   + F A+KG   DG  FI +A+++GA +++     + D +         +
Sbjct: 24  MTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQFARYN 83

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML--------- 126
           +   +  V  V  +   L+ +A +  A   +K  +I ITG+ GKTTT ++L         
Sbjct: 84  LDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQWHNLLGG 143

Query: 127 ------TIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLT 179
                 TI      +    I +  + I V   LAR +    DF   E+    L + R   
Sbjct: 144 HSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQYR--V 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             ++  +A+ T ++  HL     I    +AK  +F  L+    + LN DD
Sbjct: 202 EALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQTKAQV-LNADD 250


>gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 487

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
 gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
          Length = 458

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 86/223 (38%), Gaps = 26/223 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  DSR++ P + F AI     DGHD+I  A+  GA      T ++A  GS  +    V
Sbjct: 4   ALKTDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGA------TKIIAEHGSYKVETIIV 57

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSY 143
           +     L          L     +I +TG+ GKTTT  M    L  +KK  A    IG Y
Sbjct: 58  ESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFY 117

Query: 144 NNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              +  P+      VD             V++ + E+    L + R   H +       T
Sbjct: 118 YGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRI--HGLEFDEVAFT 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            +   HL     +E  A+AK  +F          +N DD  ++
Sbjct: 176 NLTQDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQ 218


>gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
 gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
          Length = 494

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 41/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR+I   + F AI G   DG  FI  AV +GA  VV       + G +    +
Sbjct: 27  VEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWLNA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  V ++   L++LA          +I +TG+ GKTT  +++   L  + +  A +G+
Sbjct: 87  VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188
             N    ++          +++   + EL           +S  G ++     +   + V
Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEVGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTI 247
            T ++  HL     +EE A AK  +F    K     +N DD   +   A  S+A+ +  +
Sbjct: 207 FTNLSRDHLDYHGTMEEYALAKKRLFTQ-HKCKHAVINVDDEVGKAWMADLSNAIAVSLL 265

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLG 301
                   +D+Q   W   S+ ++ E  ++         G      IG   A N+L+   
Sbjct: 266 ------PLSDYQQSVW--ASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFA 317

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L  D  T +   S   P  GR + ++              Y   P +++ A++ L 
Sbjct: 318 TLLSLGIDKQTLVDTASQLQPVIGRMELFQVPSKAKVVV----DYAHTPDALEKALAAL- 372

Query: 362 QISPHGEGRRIAVLG 376
               H  G+  A+ G
Sbjct: 373 --RVHCSGKLWAIFG 385


>gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
 gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
          Length = 494

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 40/334 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           IG + +  V+ I+ DSR+      F A KG   D H F  + V +G  ++VVN   D+  
Sbjct: 16  IGTLDKEVVD-ITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLKG 74

Query: 77  SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +  + +P     D L   + LA  +      +     +TG+ GKT+   M+ +    + 
Sbjct: 75  EVTQIIVP-----DTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLN 129

Query: 135 KTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIR 176
           K+ A +G+    I           P T++   ++   VD G   + M   SH   LG +R
Sbjct: 130 KSSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLR 189

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFF 232
                V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F 
Sbjct: 190 G----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFS 245

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E L     ++    ++++G   +A F+    ++  +    E      S +V    +G   
Sbjct: 246 EYLA----SVTPYEVFTYGIDHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYVGKFN 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             N++  +  V    A  +  I+A+    P EGR
Sbjct: 302 ISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEGR 335


>gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
 gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
          Length = 488

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 36/260 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L   +  +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWVELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKWKQC 266
               S NADF++   +W + 
Sbjct: 257 ----SMNADFKVGSHQWMKA 272


>gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
 gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
          Length = 472

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 156/366 (42%), Gaps = 43/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +    +A   +  T+  IG   N +G    L +       G + + 
Sbjct: 114 VAVAGTHGKTTTTSLTASILAEGGLDPTF-VIGGRLNSVGANAQLGQ-------GEYLVA 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P IAV+T I   H+  + +    +  A  E    +   G   L  
Sbjct: 166 EADESDASFL-HL-QPMIAVVTNIDQDHMGTYGNDFGRLKDAFVEFLHHVPFYGAAVLCA 223

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
           +D    ++L   S     K   ++G+ +  D +    ++   QS   V  QG + +E+  
Sbjct: 224 EDPGVRDILPRLS-----KPYRTYGEREGVDIRAVGIQRLGLQSRFSVLRQGAEPLEITL 278

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALN--QGFFTL 341
           +  GYH   N L  +G+ + L        +AL+ F    G G+R++    LN   G  T 
Sbjct: 279 NLPGYHNILNALAAIGVATELGVADAVIQRALAGFR---GIGRRFQINACLNFGDGEITF 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P+ + A +       P    RR+ V+            F  D  +VLS  ++
Sbjct: 336 VDD-YGHHPSELAATLDSARNAWPD---RRLVVVFQPHRYTRTRDLFE-DFVQVLSRVDV 390

Query: 402 S---HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
                V+ +G   +A  D  +L R+I V       ++ET + +F  + + L  GDVV+  
Sbjct: 391 LILLEVYSAGEAPIAGADGRSLSRAIRVRGQIDPIFAETPEEVFDILPNVLKPGDVVMTL 450

Query: 451 SSNSCG 456
            + S G
Sbjct: 451 GAGSVG 456


>gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
 gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
          Length = 530

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++L Q  Q H+        V G+SI+S+++   + FFAIKG + DG+DFI   + +   L
Sbjct: 3   YNLKQLFQKHN--------VKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVAL 54

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+ +      I      V  V+DV  AL +       +    +IA+TG+ GK++    + 
Sbjct: 55  VITDNKKNTIIDD---KVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIA 111

Query: 128 IALSSIKKTYACIGSYNNHIGVPL 151
              S + K  A IG+    IGV +
Sbjct: 112 QTYSLLGKKAASIGT----IGVEI 131


>gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
 gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
          Length = 485

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 161/409 (39%), Gaps = 72/409 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR+I   + F A KG   DG+DF   AV+ GA         +A + S+  P  
Sbjct: 25  VRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVENGA---------IAVVSSIYNPFL 75

Query: 87  GVDDVLG---ALNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            V  ++    +L +  +AA+  +    K  ++ ITG+ GKTT   ++     +  K    
Sbjct: 76  SVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKTTVSHLIKFLFDACDKPSGL 135

Query: 140 IGSY-----NNHIGVPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           IG+      NN I    T          LA M V  +     +  S +G +      V  
Sbjct: 136 IGTIEHILGNNRIQDGFTTPESCLLQKYLAEM-VKSNLTAAVIETSSIGLVLDRLANVEF 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V+T +   HL      EE   AK ++F  L  +G   +N D     L +AK      
Sbjct: 195 DVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQLSDSGLAVVNND-----LPQAKQFLEAT 249

Query: 245 KTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHMAQ 294
           + +  ++G  + AD++          S +     G   +++H G         IG +   
Sbjct: 250 RAVPVTYGIEQLADYR---------ASNLRFSPFGADFDLIHKGEIFPCHSPLIGQYNVY 300

Query: 295 NMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYR---CALNQGFFTLIDESYNANP 350
           N+L  + +    L  D+   +  ++      GR +  +   C +       ID  Y   P
Sbjct: 301 NVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLEPIQSGPCPI------YID--YAHTP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++      L  + P G G+ I V G  C  G+  +S    +A+V+  Y
Sbjct: 353 DALDNVCQTLRTLLPSG-GKLIVVFG--CG-GDRDRSKRKIMAQVVEKY 397


>gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
          Length = 457

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 118/282 (41%), Gaps = 37/282 (13%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPV 158
           + A L + A  IA+ G+ GKTTT  ML +AL              +H G+ P  +    V
Sbjct: 97  INAALLNAAKGIAVAGAHGKTTTTSMLGVAL--------------DHAGISPTIIIGGEV 142

Query: 159 DVDFGIFELGMSHL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           DV  G  +LG            +  FL   +RPHIAV+T I   HL ++  +  I  A  
Sbjct: 143 DVLGGNAKLGKGEYLVSEADESDGSFLK--LRPHIAVVTNIEDDHLDHYGTLANIRKAFR 200

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E  E ++  G   L +D+   E ++  +  LG K I S+     AD++  K +       
Sbjct: 201 EFLENIKPGGHAVLCFDN---ENVRDIAQTLGRKVI-SYAIDHEADYRAGKIEMHGAGVD 256

Query: 272 MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             V  +GK +  V   + G H   + L T+     +   V+     L++FH   G  +R+
Sbjct: 257 FSVLHEGKDLGRVRLNLPGRHNVLDALATVVTGLSIGLTVEQMAAGLALFH---GAKRRF 313

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           +         ++D+ Y  +P  +   +    Q  P    RRI
Sbjct: 314 QTKGRVQDVWVVDD-YAHHPTEIATTLLAARQTKP----RRI 350


>gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 493

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 138/345 (40%), Gaps = 55/345 (15%)

Query: 20  GIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
            IVP+   +  + +DSR+  P   F A+KG   DG  +I  A++KGA  V+   D     
Sbjct: 11  AIVPKTIKLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQH 70

Query: 79  GSLS----IPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSS 132
             +     +PV     +   L+++A    L    K T+I +TG+ GKTT  ++L      
Sbjct: 71  LQIEWHQDVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKL 130

Query: 133 IKKTYACIGSYNN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIR 176
           +  T A +G+  N                + +  +LA+ +    DF   E+  SH G ++
Sbjct: 131 LGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVS-SH-GLVQ 188

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELL 235
                +   +A+ T ++  HL     +E  A+AK  +F  L+    I +N DD    E L
Sbjct: 189 HRVEALDFDVAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQI-INADDPVGVEWL 247

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-------------EQSWMEVQLQGKSME 282
                A+ +     F  ++      +KW + +             E SW   +L      
Sbjct: 248 AELGSAVAVSCREDFHPTQ------KKWLKATKITFNNKGAHIQFESSWGNGEL------ 295

Query: 283 VVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             H G IG     N+L+    +  L  D D  ++  S      GR
Sbjct: 296 --HSGLIGEFNVSNLLLVFATLLSLDYDFDELLRTASSLTGVCGR 338


>gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           m3-13]
          Length = 449

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A II ITGS GKTTT  ++   L++ KK+    G+  N   V + +A+   + D  + 
Sbjct: 110 SEAPIIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGN---VSVEVAQQATEKDIMVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T + RP I+V   +  AHL     ++E   AKA+IF    K     +
Sbjct: 167 ELSSFQL----MGTDIFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIFFNQTKEDYAVV 222

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNAD 257
           N DD+  +++K      GI+ TI  F  +K  D
Sbjct: 223 NADDA--QVMKLSE---GIQPTIVPFSTNKTVD 250


>gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 494

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 40/334 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           IG + +  V+ I+ DSR+      F A KG   D H F  + V +G  ++VVN   D+  
Sbjct: 16  IGTLDKEVVD-ITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLNG 74

Query: 77  SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +  + +P     D L   + LA  +      +     +TG+ GKT+   M+ +    + 
Sbjct: 75  DVTQIIVP-----DTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLN 129

Query: 135 KTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIR 176
           K  A +G+    I           P T++   ++   VD G   + M   SH   LG +R
Sbjct: 130 KNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLR 189

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFF 232
                V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F 
Sbjct: 190 G----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFS 245

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E L     ++    ++++G   +A F+    ++  +    E      S +V    +G   
Sbjct: 246 EYLA----SVTPYEVFTYGIDNDAQFRAINVEESLQGVKFEFDTPFGSYQVESPYVGKFN 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             N++  +  V    A  +  I+A+    P EGR
Sbjct: 302 ISNIMAAMIAVWSKGATFEEIIEAVKSLEPVEGR 335


>gi|225868966|ref|YP_002744914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702242|emb|CAW99994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 457

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 31/279 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  +D  +  L ++ +A  L S+A II ITGS GKTTT  M+   L+   ++    G   
Sbjct: 94  VRALDKAISILTEVELA-YLVSEAPIIGITGSNGKTTTTTMIADVLNVGDQSALLAG--- 149

Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +IG P + +A+     D  + EL    L      T   +PHIAVIT + P HL      
Sbjct: 150 -NIGFPASEVAQAATAKDILVMELSSFQL----LGTEQFQPHIAVITNLVPTHLDYHGSF 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+  +AK  I   +     + LN D    + L  K+ A  +   +S  +  +  +    +
Sbjct: 205 EDYIAAKWRIQHRMTGKDYLVLNADQELVKSLAQKTKASPV--FFSTKEKVDGAYLADGY 262

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E+  M     G          G H  +N L T+ +  +         + LS F   
Sbjct: 263 LYFKEERLMSAAELGVP--------GRHNIENALATIAVAKLRGISNQVISRTLSHF--- 311

Query: 324 EGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAIS 358
             RG ++R      LNQ   T  ++S + N  + + A+S
Sbjct: 312 --RGVKHRLQLVGTLNQ--VTFYNDSKSTNILACQKALS 346


>gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
 gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
          Length = 490

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 158/386 (40%), Gaps = 39/386 (10%)

Query: 18  SIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G+ P+      V+ ++ DSR +     F A+ G    G DFI +A++ GAG ++ +  
Sbjct: 7   DLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTDR- 65

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTT----TKE 124
             A I +  +       V+      A+A            T++A+TG+ GKT+    T++
Sbjct: 66  AGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTRQ 125

Query: 125 M--------LTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVD-VDFGIFELGMSHLG 173
           +        + I  + ++  +   G +     V L   LA M  D V     E     L 
Sbjct: 126 IWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGLD 185

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFF 232
           + R     VR   A  T +   HL     +E    AK  +F GL   G +  +N DD   
Sbjct: 186 QKRM--DGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHG 243

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGY 290
             +       GI+ I   G ++ A+  L+   +  +++  +V  + QG + +V  + IG 
Sbjct: 244 LRVAEACSTRGIEVI---GVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGA 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G+V     D +      +V H  EG   R + A  +     I   Y+  P
Sbjct: 301 FQAMNVLTAAGLVIAGGEDPE---DVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            S++ A+  L    PH  GR + V G
Sbjct: 358 DSLEVALKAL---RPHVLGRLVVVFG 380


>gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
          Length = 491

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 157/391 (40%), Gaps = 58/391 (14%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++GH+ G V          DSR + P + F AI G  YDGHDFI  A   GA ++V   +
Sbjct: 19  LEGHTRGQVRN--------DSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHERE 70

Query: 74  MVASIGSLSIPVF-GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +      L  P +  V D   A  +L             +I +TG+ GKTTT  ++    
Sbjct: 71  LT---DYLEKPTYIRVTDSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIF 127

Query: 131 SSIKKTYACIGS---YNNHIGVPLT------------LARMPVD-VDFGIFELGMSHLGE 174
            +  +    I +    +  I  P T            LA M  + +     EL    L +
Sbjct: 128 RNAGEPCGLISTVEYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQ 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE---GLEKTGTIFLNYDDSF 231
            R   +  R   A+ T +   HL     +E    AK   F    GL+  GT  +N DD F
Sbjct: 188 GRI--NGARFRTAIFTNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLD--GTAVINIDDEF 243

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            + L   +  +  +   +FG +  AD+ +   +  +E S   +  + ++ +V  + IG H
Sbjct: 244 GKRL---ARDISGRQQVTFGMTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTH 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKE------GRGKRYRCALNQGFFTLIDES 345
              N+         + A +D  +K  ++ H         GR + +R +     F +    
Sbjct: 301 NIHNL------TGAILAALDYGLKPEAISHALNRPIRVPGRLEPFRASPEGPVFYV---D 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y     ++K  + +L +I+   +G+ IAV G
Sbjct: 352 YAHTDDALKNVLEILRKIT---KGKLIAVFG 379


>gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 451

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ +I ITGS GKTTT  M+   L++  +     G    +IG P + + +   D 
Sbjct: 106 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAADDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +
Sbjct: 162 DILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L   + A    TI  F  ++  D    + KQ        +  +G++
Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265

Query: 281 -MEVVHHGI-GYHMAQNMLMTLGIVSI 305
            M V   G+ G H  +N L T+ +  +
Sbjct: 266 IMSVDDIGVPGSHNVENALATIAVAKL 292


>gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 507

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 40/324 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPV 85
           +  I+ +S+ +     F AIKG   DGH +I  A++  A +++ +     S I SL    
Sbjct: 28  IKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADKSFINSLKEKY 87

Query: 86  FGVDDVLGALN---KLA-VAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTY 137
             V   +G+ N    LA ++A+L  + T     IAITG+ GKTTT  +L  AL S K   
Sbjct: 88  KNVC-FVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKAALESAKNKI 146

Query: 138 ACIGSYNNHIGVPLTLARM--PVDVDF-GIFELGMSHLGEIRFLTHLVRP---------- 184
           A IG+  N IG       +  P  VD   IF+         + ++H+V            
Sbjct: 147 ALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYK-----KNVSHIVMEASSQALAMDR 201

Query: 185 ------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----FLNYDDSFFEL 234
                   A+ T +   HL     ++    AK ++F  L+++        +N    +F+ 
Sbjct: 202 CDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTDYFKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMA 293
           +K     L +K + ++G ++ AD+  +     S+ S  E   +GK +  V    +G    
Sbjct: 262 IKNYIKKLDLKMV-TYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGEFNV 320

Query: 294 QNMLMTLGIVSILTADVDTAIKAL 317
            N L  L        D++  IKA+
Sbjct: 321 VNSLSVLAYAYEYKLDIEKVIKAI 344


>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile 630]
 gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile]
          Length = 484

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 102/269 (37%), Gaps = 45/269 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  DSR +     F  IKG   DGH +I  A++KGA   +V  D VA  G   I   
Sbjct: 23  INNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFIVEED-VAIKGCTFIK-- 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D    + K+A         K  +I +TG+ GKT+   +L   L+  K     IG+  
Sbjct: 80  -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138

Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
                                  +NN +        M V        L ++ + E  F  
Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 + + T + P HL     +E+   AK ++F   + T    +N DD   + +    
Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268
             + +   Y++G    ADF  R  K  S+
Sbjct: 246 KGINV-PCYTYGVDTKADFMARDIKSDSD 273


>gi|291533194|emb|CBL06307.1| UDP-N-acetylmuramate--L-alanine ligase [Megamonas hypermegale
           ART12/1]
          Length = 393

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 117/269 (43%), Gaps = 20/269 (7%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV 158
           + A L + A  IA+ G+ GKTTT  M+++ L   K      IG + +++     L +   
Sbjct: 80  ILAYLLNDAKGIAVAGAHGKTTTSSMISVVLEHAKVDPTILIGGFVDYLKGNAKLGKS-- 137

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D+ + E   S    ++F      P IAVIT I   H+ ++  +E I  A  +  + L+
Sbjct: 138 --DYLVAEADESDGSFLKFY-----PKIAVITNIEDDHMDHYGSMENIIKAFIQFVQNLD 190

Query: 219 K-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           K TG   L +D+   E ++  +  +  K I S+    +AD+  +  K     +   V  +
Sbjct: 191 KETGLAVLCFDN---ENIRNIADKVDRKYI-SYALDHDADYMAKDIKIDGPHTSFTVIYK 246

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +  V   I G H   N L T+ +   +   ++   +   VF    G  +R++     
Sbjct: 247 GEVLGDVALNIPGKHNVLNALATIAVCHHMGLSIEEIAEGFKVF---SGTKRRFQTKFRN 303

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISP 365
               ++D+ Y  +P  ++  I    Q +P
Sbjct: 304 ENVWIVDD-YAHHPTEIQTTIKAAKQTNP 331


>gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
 gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
          Length = 503

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 21/223 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  DSR++   + F A  G   DG  FI  A+ +GA  V+ +        + ++P  
Sbjct: 16  LNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWDAHNFVWDKAWTVPNI 75

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           G+ D+      LA A          +I +TG+ GKT+T   +  AL    K  A IG+  
Sbjct: 76  GISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCALIGTLG 135

Query: 145 NHI---------GVPLTLARMPVDVDF-------GIFELGMSHLGEIRFLTHLVRPHIAV 188
           N             P  +    +  DF          E+    L + R   + VR  +A+
Sbjct: 136 NGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRV--NGVRFDVAL 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +T ++  HL     +E  A+ K  +F+  +      +N DD+F
Sbjct: 194 LTNLSRDHLDYHGDMESYAATKRRLFD-WQSLNYAVINLDDAF 235


>gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 487

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
          Length = 497

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 124/318 (38%), Gaps = 39/318 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I  DSR       F AIKG   DGHD+I  A  KG+ + ++N D+     ++ I V 
Sbjct: 26  ISDIVYDSRKAVKDSIFVAIKGETVDGHDYIKGAYDKGSRVFIINHDLEIEDDAIKIIVP 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142
               VL  ++ +  +   + K  ++ ITG+ GKTT    +   L+        IG+    
Sbjct: 86  DSRRVLSRMSAIFFSEPTK-KLKVVGITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVF 144

Query: 143 YNNHIGVPLTLARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPH 185
           YN+     L       ++   I E                 L M  + +I F        
Sbjct: 145 YNDVAEKTLNTTPESYELQKTIKEMLDAGVECVAMEVSSSGLMMGRVDDIDF-------D 197

Query: 186 IAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           I V T ++P H+        E     K+ +F GL K G I ++ +++ + +  AK    G
Sbjct: 198 IGVYTNLSPDHIGPKEHPTFEHYRECKSRLF-GLCKYGIINVDDENAQYMVDHAKCPTCG 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTL 300
               +S  K  N      +  + S    ++   + K  + V   I   G     N L  +
Sbjct: 257 ----FSIDKESNIKAGNIELTRSSASLGVDFDYKLKDQDTVRTHICSPGEFSIYNALAVI 312

Query: 301 GIVSILTADVDTAIKALS 318
           G+      D D  ++ALS
Sbjct: 313 GVCDHFGIDRDKMLEALS 330


>gi|11272240|pir||A81777 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) NMA2061 [imported]
           - Neisseria meningitidis (strain Z2491 serogroup A)
 gi|121052817|emb|CAM09164.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis Z2491]
 gi|308388625|gb|ADO30945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           alpha710]
 gi|319411048|emb|CBY91448.1| UDP-N-acetylmuramate-L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 506

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 485 LNMGAGSIN--RVPAALLE 501


>gi|254805545|ref|YP_003083766.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
 gi|254669087|emb|CBA07638.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
          Length = 506

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 485 LNMGAGSIN--RVPAALLE 501


>gi|218768809|ref|YP_002343321.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           Z2491]
 gi|325203530|gb|ADY98983.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240355]
          Length = 468

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 331 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 386

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 387 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 446

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 447 LNMGAGSIN--RVPAALLE 463


>gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae Rd KW20]
 gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
 gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae Rd KW20]
 gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
          Length = 488

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 36/260 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      VA IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA        +  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKWKQC 266
               S NADF++   +W + 
Sbjct: 257 ----SMNADFKVGSHQWMKA 272


>gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae 35/02]
 gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae MS11]
 gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID18]
 gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI2]
 gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 445

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      S  ++ LQG
Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273


>gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           agalactiae ATCC 13813]
          Length = 455

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ +I ITGS GKTTT  M+   L++  +     G    +IG P + + +   D 
Sbjct: 110 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAADDK 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +
Sbjct: 166 DILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L   + A    TI  F  ++  D    + KQ        +  +G++
Sbjct: 222 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 269

Query: 281 -MEVVHHGI-GYHMAQNMLMTLGIVSI 305
            M V   G+ G H  +N L T+ +  +
Sbjct: 270 IMSVDDIGVPGSHNVENALATIAVAKL 296


>gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI18]
 gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA6140]
 gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA19]
 gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID332]
 gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-92-679]
 gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 445

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      S  ++ LQG
Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273


>gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36]
 gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36]
          Length = 503

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           VN + IDSR +   + F AI G   DG  FI  A++ GA  V+ + D  A  G +     
Sbjct: 32  VNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLKDADNEAEHGHIDYIDQ 91

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              I  FG++  L AL           +  +I +TG+ GK+T  +++   ++ +      
Sbjct: 92  RPIISFFGLNQALSALAD-NFYQSPSQQLKLIGVTGTNGKSTITQIIANWVTLLAGKAGV 150

Query: 140 IGSYNNHIGVPLTLARMP----VDVDFGIFE----------LGMSHLGEIRFLTHLVRPH 185
           +G+  N +   LT A       +DV   I            + +S  G I+   + +   
Sbjct: 151 MGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEVSSHGLIQGRVNALDFD 210

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +A+ T +   HL     ++  A AK  +F+G  K     LN DD++ ++
Sbjct: 211 VALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHK--ILNVDDAYGKM 257


>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 434

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 90  AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 145

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 146 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 201

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 202 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 255

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 256 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 291


>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMG 18311]
 gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus CNRZ1066]
 gi|62900662|sp|Q5M0D5|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900663|sp|Q5M4Y2|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus LMG 18311]
 gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus CNRZ1066]
 gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus ND03]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L+   K+    G  + +IG P + +A+   + 
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTNQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        PHIAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             I LN++    + L  +++A
Sbjct: 218 DFIILNFNQDLAKELATQTNA 238


>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
 gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
          Length = 500

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 144/385 (37%), Gaps = 61/385 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIQI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   L+        +G
Sbjct: 85  PKIIVKDARYAMAIIASHFYGYPSNKIKLIGITGTNGKTTTSYLLEKILTDHGFQTGLMG 144

Query: 142 SYNNHIG-----VPLTLARMPV-----------DVDFGIFE-----LGMSHLGEIRFLTH 180
           +    +G       +     P+           + D+ + E     L M  +    F T 
Sbjct: 145 NNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYCVMEVTSQGLHMERVKGCNFKT- 203

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF---------LNYDDSF 231
                 AV T +   HL      EE    K  +F  L   G  F         LN DD  
Sbjct: 204 ------AVFTNLTQDHLDYHGTFEEYKQVKGLLFSRL---GNDFSTTDKKIAILNADDPS 254

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E  K  + A     + ++G    AD Q +      +     V       E+  + +G  
Sbjct: 255 VEYFKKVTSA----EVITYGIHNGADVQAKNITLSPKGIQFLVSTFNGEKEINLNLVGRF 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L  D+     + S+ H K   G+      NQ F  ++D  Y   P 
Sbjct: 311 NVYNALAAITVA--LVEDIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVD--YAHTPD 366

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           +++   +VLS IS   +G+ I V G
Sbjct: 367 ALE---NVLSTISEFSKGKIITVFG 388


>gi|319939629|ref|ZP_08013988.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811218|gb|EFW07524.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  ++    G  + +IG P + +A      
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQS----GLLSGNIGFPASQVATTATKN 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P H+      E   +AK  I + + K+
Sbjct: 162 DTLVMELSSFQLMGIETF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKS 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             + LN++ +  + L AK+ A    T+  F  ++  D
Sbjct: 218 DFLVLNFNQTLAKELAAKTQA----TVVPFSTTEKVD 250


>gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 487

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L        +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 251 ITYSQLHSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 362 PHAKGRLLCLFG 373


>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-23m63]
 gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
 gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
          Length = 484

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 102/269 (37%), Gaps = 45/269 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  DSR +     F  IKG   DGH +I  A++KGA   +V  D V   G   I   
Sbjct: 23  INNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEED-VEIKGCTFIK-- 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D    + K+A         K  +I +TG+ GKT+   +L   L+  K     IG+  
Sbjct: 80  -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138

Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
                                  +NN +        M V        L ++ + E  F  
Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 + + T + P HL     +E+   AK ++F   + T    +N DD   + +    
Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268
             + +   Y++G   NADF  R  K  S+
Sbjct: 246 KGINV-PCYTYGVDTNADFMARDIKSDSD 273


>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
 gi|254766058|sp|B8ZMZ6|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
 gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
          Length = 467

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 161/368 (43%), Gaps = 35/368 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSIPVFGV 88
           +DSR + P   F A+ G    G +FI +A+++GAG ++   +   +  +  SLS     V
Sbjct: 1   MDSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVV 60

Query: 89  DDVLGALNKLAVAARL---RSKATIIAITGSVGKTT----TKEMLT-IALSSIK-KTYAC 139
            +       LA AA L       T+IA+TG+ GKT+    T+++   +   ++   T   
Sbjct: 61  AE--DPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGV 118

Query: 140 IGSYNNHIG----VPLTLARMPVDVDF-GIFELGM---SHLGEIRFL--THLVRPHIAVI 189
            G+Y+  +G     P+TL RM    +  G+    M   SH    R L   HLV    A  
Sbjct: 119 EGAYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLV---AAGF 175

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T     HL   +  +E  +AKA +F   L + G   +N +DS    + A +   G + + 
Sbjct: 176 TNFTQDHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERG-QDLI 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+   AD +L+  +  +    +  + + +  ++    IG   A+N+L+  G+     A
Sbjct: 235 TVGREVGADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGA 294

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D +   + L       GR  +     + G    +D  Y   P ++  AI  L    PH  
Sbjct: 295 DAERVFETLPGMKTVRGR-MQLAATRDTGATVFVD--YAHTPDAVATAIKAL---RPHVM 348

Query: 369 GRRIAVLG 376
           GR IA++G
Sbjct: 349 GRLIAIVG 356


>gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae NEM316]
 gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
 gi|30316027|sp|Q8E6P1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
          Length = 451

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 23/207 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ +I ITGS GKTTT  M+   L++  +     G    +IG P + + +   D 
Sbjct: 106 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAADDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +
Sbjct: 162 DILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L   + A    TI  F  ++  D    + KQ        +  +G++
Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265

Query: 281 MEVVHH-GI-GYHMAQNMLMTLGIVSI 305
           + +V   G+ G H  +N L T+ +  +
Sbjct: 266 IMLVDDIGVPGSHNVENALATIAVAKL 292


>gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae NCCP11945]
 gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae NCCP11945]
          Length = 445

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      S  ++ LQG
Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273


>gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
 gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 489

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 6   TFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  DLL  I GH+     G VP   +  I+ DSR + P   F A+ G   DG  FI  A+
Sbjct: 10  TMADLLALIAGHARLERGGSVP---IAAITSDSRKVGPGTLFVAVPGTKADGARFIPDAL 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  V++      +   + +P+    DV  +L   A     R   TI+A+TG+ GKT+
Sbjct: 67  AKGAAAVLMEP--TGAPPDMDVPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTS 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP 150
             E        +++ +A       H+G+P
Sbjct: 125 VAEF-------VRQIWA-------HLGIP 139


>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17570]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+ +F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVAFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|25008815|sp|Q9JSZ8|MURC_NEIMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325130849|gb|EGC53582.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           OX99.30304]
          Length = 469

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 448 LNMGAGSIN--RVPAALLE 464


>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae TIGR4]
 gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
           TIGR4]
 gi|30316108|sp|Q97RU8|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae TIGR4]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|315221960|ref|ZP_07863871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
 gi|315188926|gb|EFU22630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
          Length = 450

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A      
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQN----GLLSGNIGFPASQVATTATQN 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P H+      E   +AK  I + + K+
Sbjct: 162 DTLVMELSSFQLMGIETF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKS 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             + LN++ +  + L AK+ A    T+  F  ++  D
Sbjct: 218 DFLILNFNQTLAKELAAKTQA----TVVPFSTTEKVD 250


>gi|313677380|ref|YP_004055376.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312944078|gb|ADR23268.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 465

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 138/303 (45%), Gaps = 25/303 (8%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPV 158
           V  +L      +A+ G+ GKTTT  M+   L S KK  A  +G    +    + + +   
Sbjct: 105 VLGKLTEGMFTVAVAGTHGKTTTSSMIAHLLKSGKKDIAGFLGGITTNYDTNMIMNQS-- 162

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D    I  +         FLT  ++P++AV+T+    HL  +  +EE+  + +   E + 
Sbjct: 163 DYKKAIIVVEADEFDR-SFLT--LKPNVAVVTSTDADHLDIYGKLEELKKSFSLFLENVN 219

Query: 219 KTGTIFLN---YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +G I++    +++   + +KAK  + G+      G  +    Q++  K   + +     
Sbjct: 220 PSGQIYIKDGLWEEIATKRIKAKPSSYGLNA----GDIRALHVQVKDAKFVFDVTLDNKV 275

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++G  + V     G+H  +N ++ + I + L       ++ +  +   +G  +R+   + 
Sbjct: 276 IKGFQLSVP----GFHNVENAVVAIAIANQLGLSDKEILEGIRTY---QGVKRRFEYVIQ 328

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +  F  ID+ Y  +P+ +KA ++ +  + P   G++++VL     +   ++ F ++ ++ 
Sbjct: 329 RNDFVFIDD-YAHHPSEIKAMLTSVRALYP---GKKVSVLF-QPHLYSRTRDFAVEFSQS 383

Query: 396 LSL 398
           LSL
Sbjct: 384 LSL 386


>gi|323694259|ref|ZP_08108435.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
 gi|323501732|gb|EGB17618.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
          Length = 459

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 47/382 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141
           IP+    ++LG +        +++    IAI G+ GKTTT  M+T I L +       +G
Sbjct: 94  IPMMSRAELLGQM--------MKNYREAIAIAGTHGKTTTTSMVTEIFLEADNNPTISVG 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199
              N IG          ++  G  E  ++   E    FL+    P +AVI  I   HL  
Sbjct: 146 GILNSIGG---------NIRVGGPEFFVTEACEYTNSFLSFY--PTMAVILNIEEDHLDF 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F  I++I  +  +  E + + GTI +N     +  L A +       + +FG SK  D+ 
Sbjct: 195 FKNIDDIRRSFRQFIEKVPENGTIIMNGTIENWRELTAGAAG----KVVTFGNSKENDYS 250

Query: 260 LRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKA 316
                + + +  S+ ++ ++G+  E +  G+ G H   N L  + +     A ++ A + 
Sbjct: 251 FDAVVYDEYARPSF-DLYIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRG 309

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAIS-----VLSQISPHG 367
           L  F    G  +R+         T+ID+ Y  +P    A++KAA +     +     PH 
Sbjct: 310 LLKF---TGTNRRFEKKGELKGITIIDD-YAHHPQEIEATLKAAENYPHKRICCAFQPHT 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             R  A + +  +   LS +  + L ++        + +S   ++AL     + +   Y 
Sbjct: 366 YTRTKAFMKEFAQA--LSLADCVMLTDIYPARETDTLGVSSADIVAL--LKEKGVDAWYL 421

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            T D +  FI  +   GD+++ 
Sbjct: 422 PTFDDMEKFILENCTQGDLLIT 443


>gi|332288551|ref|YP_004419403.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330431447|gb|AEC16506.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 480

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 154/380 (40%), Gaps = 55/380 (14%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  M+ +  A + +  T+   G       N H+G+   L     + D  
Sbjct: 126 IAVAGTHGKTTTTAMIAMIYAQAKLDPTFVNGGLVKSAGTNAHLGLSRYLIAEADESDAS 185

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P +AV+T I P H+  + G  EE+          L   G 
Sbjct: 186 FLHL---------------QPMVAVVTNIEPDHMDTYHGNFEEMKQTYINFLHNLPFYGL 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             L  DD   + L  K   +G + + ++G S  AD+++  + Q   Q  +  +   G+ M
Sbjct: 231 AVLCADDPVLQTLLPK---VG-RQVITYGFSDKADYRIEDYSQTGFQGHYTVICPDGQRM 286

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQG 337
           E++ +  G H A N    L +      D ++ + AL+ F   +G G+R+          G
Sbjct: 287 EILLNVPGKHNALNATAALAVAKEEGIDDESILAALADF---QGAGRRFDQLGSFIRPNG 343

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              LID+ Y  +P  +   I    Q + HG E +RI ++            F  D  +VL
Sbjct: 344 KVMLIDD-YGHHPTEVNVTI----QAARHGWENKRIVMIFQPHRYSRTRDLFD-DFVQVL 397

Query: 397 SLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGD 445
           S  ++     V+ +G   +A  D+      +     +D +FL         +   L DGD
Sbjct: 398 SQVDVLIMLDVYPAGEAPIAGADSRSLCRSIRNLGKIDPIFLADPEQLPEIMDQVLQDGD 457

Query: 446 VVVVKSSNSCG--FYRLINL 463
           +++ + + S      RL+ L
Sbjct: 458 LILAQGAGSVSKLSRRLVEL 477


>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
          Length = 450

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG--EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
          Length = 492

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237
             IAV T +   HL      +E    K+ +F  L     TI      LN DD   E  K 
Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 253

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + ++G    AD Q +      +     V      +EV  + +G     N L
Sbjct: 254 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +  +    +     +LS     EGR +      NQ F  ++D  Y   P +++   
Sbjct: 310 AAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 362

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VLS I    +G+ I V G
Sbjct: 363 NVLSTIREFAKGKIITVFG 381


>gi|229196429|ref|ZP_04323176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587066|gb|EEK45137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 147

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 71/126 (56%), Gaps = 5/126 (3%)

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FT+I++++NA+P+SMKAAI  L +++ +   +++ V+GDM E+G+  +++H ++ ++L+ 
Sbjct: 20  FTIINDAWNASPSSMKAAIETLQKLNAY--KKKMIVIGDMLELGKKGETYHREIGKMLNE 77

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSC 455
            +I +V+  G     + +   ++ H    ++ D      +  L      DVV++K S   
Sbjct: 78  ESIQYVFTYGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGM 137

Query: 456 GFYRLI 461
               ++
Sbjct: 138 ALEEIV 143


>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 491

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 171/413 (41%), Gaps = 58/413 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++++ I+ H I ++    +N  GI+ DSR +     FFA+ G   DG ++I  A+ KG
Sbjct: 4   LKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAISKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSK-ATIIAITGSVGKTTT 122
           A  V +  ++    G   +P+  V ++L  L+K+ +      SK   II +TG+ GKTTT
Sbjct: 64  ASAVFLEGEVNNIYG---VPLVRVREILDVLSKVSSYFYDFPSKYLNIIGVTGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIG---------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
             +L     S       IG         SY ++   P      P D+   + ++      
Sbjct: 121 TNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTP-----QPQDLQEILRKMVDR--- 172

Query: 174 EIRFLTHLVRPHI-------------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           E++FL   +  H              AV T +   HL     +EE   AK +IF  LE  
Sbjct: 173 EVKFLAMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLEDG 232

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +N D+ +   +   +  +   ++      KN D  L+K +  +    +E+      
Sbjct: 233 GFAVINRDNEWTGRISLPNRRVFWVSL------KNGDLYLKKHENTNNGMLLEIGTPLGD 286

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +     G     N+L  +G++  L   ++   K LS F   +GR +  R    Q F  
Sbjct: 287 LIIDTKLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREG--QNFDV 344

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMGELS 385
           ++D  Y   P  +    +VL  +    +GR I V G           +MGE+S
Sbjct: 345 IVD--YAHTPDGL---FNVLQTVKEFTKGRVIVVFGCGGDRDPTKRDKMGEIS 392


>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMD-9]
 gi|122267801|sp|Q03L98|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus LMD-9]
          Length = 450

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L+   K+    G  + +IG P + +A+   + 
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTNQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        PHIAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             I LN++    + L  +++A
Sbjct: 218 DFIILNFNQDLAKELATQTNA 238


>gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces lividans TK24]
 gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
 gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
          Length = 497

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 154/376 (40%), Gaps = 46/376 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +        +  +P  
Sbjct: 26  ITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPAGAERAAAAGLPAL 85

Query: 87  GVDDVLGALNKLAVAARLRSKATI----------IAITGSVGKTTTKEMLTIALSSIKKT 136
            VDD    + +LA        ATI          I ITG+ GKTTT  ++   L + K T
Sbjct: 86  VVDDPRARMGELA--------ATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLRTAKST 137

Query: 137 YACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------- 185
              IG+    IG     +    P   D       M   G    +   V  H         
Sbjct: 138 -GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERG-TEAVAMEVSSHALVLGRVDA 195

Query: 186 ----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               IAV T ++P H+   SG+E+   AKA++F   +++    +N DD +   L AK   
Sbjct: 196 CVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEYGRRL-AKEAT 253

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           + + T YS     +AD++  + +    + ++  +  +G+ +       G     N L  +
Sbjct: 254 VPVVT-YSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLAGPFNVANTLAAI 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++    D  +A   ++      GR +  R    Q FF ++D ++  +     A  SVL
Sbjct: 313 VALAAAGLDPQSAADGVAAVPGVPGRLE--RVDEGQPFFAVVDYAHKTD-----AVESVL 365

Query: 361 SQISPHGEGRRIAVLG 376
             +    EG+  AVLG
Sbjct: 366 RALRKVTEGKLHAVLG 381


>gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria monocytogenes L99]
          Length = 491

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 154/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++        
Sbjct: 236 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N+L  +     L   ++ AI  L      +GR +       Q F  ++
Sbjct: 292 VKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAG--QAFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I+   E R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIAEFAEKRVFVVVG 378


>gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus
           TK-6]
          Length = 452

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 61/405 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + IPV    D+L  L +L            IA+ GS GKTTT  M+   +         
Sbjct: 87  KMGIPVIPRGDMLAELFRLKEG---------IAVCGSHGKTTTTSMIAHMVHE------- 130

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHL 197
              Y+  + +   L +   +   G  +L +S   E    FL  L  P +AVIT I   HL
Sbjct: 131 -AGYDPTVIIGGVLQKFGSNARLGKDQLIISEADESDGSFLKLL--PTVAVITNIDREHL 187

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNA 256
             +  ++EI SA       +   G   +N DD +  E++K+    L      +FG  + A
Sbjct: 188 GYYKDLDEIKSAFLRFANSVPFYGFCVMNADDENSREVMKSVKAPL-----ITFGIEREA 242

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIK 315
               R           ++  +GK +  +H  + G H   N L  + +   +   V    K
Sbjct: 243 HLMARNLSLEGGCYSFDLFYEGKPLTRIHMSVAGRHNVYNALAGIAVCLRMGISVSNIKK 302

Query: 316 ALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQI---------- 363
           AL  F   E R +       +G+F    + + Y  +P  ++A I  L ++          
Sbjct: 303 ALESFKNAERRLE------FKGYFKGAAVYDDYGHHPTEIRAVIKALREMYLQRRIVLVF 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            PH   R   +  D  E+        +  A+V  L +I        + ++ +D L ++  
Sbjct: 357 QPHRYSRTYYLFKDFVEV--------LKEADVCLLTDIYSAGEENSYGVSAQD-LAKAAG 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + E  + LF  I+  + D DV++   + S      I+   EEF
Sbjct: 408 CAFFENKEELFDAIEKKVKDADVILFMGAGS------ISRWCEEF 446


>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae R6]
 gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae D39]
 gi|30316022|sp|Q8DQM2|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122279017|sp|Q04LK1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae R6]
 gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae D39]
          Length = 450

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
 gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
          Length = 454

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
           + A+  +  +PV+G          + +A RLR    A  +A+TG+ GKTTT  ML   L 
Sbjct: 66  LFAAAEAAGVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILE 116

Query: 132 SIKKTYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +     A +G    +IGV L    LA  P DV     EL    L         VRPH A 
Sbjct: 117 AAGHRTAAVG----NIGVSLLDAVLAEEPYDV--LAVELSSYQL----HWAPSVRPHSAA 166

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247
           +  +AP HL     +   A+ K  ++EG  +   ++ + D +  EL++A     G + I 
Sbjct: 167 VLNLAPDHLDWHGSMAAYAADKGRVYEG-NQVACVYNSADPATEELVRAADVEEGCRAIG 225

Query: 248 YSFGKSKNADF 258
           ++ G  + ++ 
Sbjct: 226 FTLGTPRPSEL 236


>gi|296269387|ref|YP_003652019.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
 gi|296092174|gb|ADG88126.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
          Length = 472

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
           A+AA +  + T IA+ G+ GKTTT  MLT+AL       + C+G           LA   
Sbjct: 107 ALAAVMEGR-TGIAVAGTHGKTTTTSMLTVALQKCGADPSYCVGGL---------LATTG 156

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           +  D G  +L ++   E      ++RP IA++T +   HL N+  +  +  + A     +
Sbjct: 157 LGADDGAGDLFVAEADESDGSFLMLRPAIAIVTNVEADHLDNYGDVRAVHESFARF---V 213

Query: 218 EKTGTIF-LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           E+ G++  L  DD     L A +   G+ T+ ++G+S  AD++
Sbjct: 214 ERVGSLLVLCADDPGSAALAAPARERGL-TVVTYGESAGADYR 255


>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
 gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
          Length = 491

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 154/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++        
Sbjct: 236 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N+L  +     L   ++ AI  L      +GR +       Q F  ++
Sbjct: 292 VKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAG--QAFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I+   E R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIAEFAEKRVFVVVG 378


>gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 2336]
 gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336]
          Length = 495

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 29/222 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR       F AIKG   DG +FI+ A+Q GA  V+  TD+V    ++S    IP+  
Sbjct: 28  LDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVSFEQNIPLIA 87

Query: 88  VDDVLGALNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             ++   L+   +A R  S    + T++ +TG+ GKTT  ++L      +  T A +G+ 
Sbjct: 88  YYELSKHLSH--IADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHTSAVMGTI 145

Query: 144 NN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N                I +  +L + +    DF   E+    L + R      R    
Sbjct: 146 GNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEALTFRA--G 203

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           + T ++  HL     +E  A AK  +F  L     I LN DD
Sbjct: 204 IFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKI-LNVDD 244


>gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 492

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 23/225 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V  + +DSR + P + F AIKG   DG  FI  A++ GA  + +  D +    S  
Sbjct: 16  PSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIENGA--IAIIADRLCEFESSF 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            P++ V ++   L +L  A+R  S+ +    +I +TG+ GK+TT  M+           A
Sbjct: 74  EPLYLVSELDKKLPEL--ASRFYSQPSQTLDLIGVTGTNGKSTTTAMIAHLAQFCSTESA 131

Query: 139 CIGS--YNNHIGVPLTLARMPVDVDFG--IFELGMSH--LGEIRFLTH-LVRPHI----- 186
            IG+  Y +   +   +   P  VD    + +L   H  L  +   +H LV+  +     
Sbjct: 132 IIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAMEVSSHGLVQQRVAKCQF 191

Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             AV T ++  HL     +     AK  +F   E    + LN DD
Sbjct: 192 KAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFEPQ-VVVLNQDD 235


>gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
 gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 163/404 (40%), Gaps = 50/404 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI------IAITGSVGKTTTK 123
           +  D+ A + S +I     + V     K+ V +R    A +      IAI+GS GKTTT 
Sbjct: 63  IEDDITAVVTSSAISPANEEIVAAKAKKITVISRGEMLAELMRLRYGIAISGSHGKTTTT 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +++  +        CI    NH  +        +  ++ + E   S    +R     + 
Sbjct: 123 SLISQIMMHAGLNPVCIIG-GNHFNLKSNAVCNDLSSEYMVCEADESDGSFLR-----LS 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I   HL  +  +E +  A  E    +   G  FL +++     L   ++   
Sbjct: 177 PVINVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCFENDVVRDLSKSAN--- 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ------SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            K  YS+G  K+ DF + K     E       ++   +  G   E     IG H   N L
Sbjct: 234 -KKYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLG---EFSVPLIGEHNILNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++G+   L  DV    + L  F   EG G+R    L     TL D+ Y  +P  +KA +
Sbjct: 290 ASIGVAYHLGIDVPNIKEGLKTF---EGVGRRLN-KLYDKEITLFDD-YAHHPTEIKATL 344

Query: 358 S----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVW 405
           S          +++   PH   R   +L D         +F+ D  EV+   +Y      
Sbjct: 345 SSVRNAYKSRRIIAVFQPHRYSRTELLLND------FEYAFN-DADEVIITDIYAAGEAP 397

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++G +   + D + + + +V Y + +D +   ++S   DGD+++
Sbjct: 398 IAGVNGEIICDIVKKQNKNVRYIKNIDEVLPVLESIKKDGDIII 441


>gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226722947|sp|B1IAM3|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 450

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVIPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae G54]
 gi|226722946|sp|B5E2Z8|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
 gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae G54]
          Length = 450

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 NTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces coelicolor A3(2)]
 gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 152/368 (41%), Gaps = 30/368 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +        +  +P  
Sbjct: 35  ITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPAGAERAAAAGLPAL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD    + +LA          +  I ITG+ GKTTT  ++   L + K T   IG+  
Sbjct: 95  VVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLRTAKST-GLIGTVE 153

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G    +   V  H             IAV 
Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-TEAVAMEVSSHALVLGRVDACVFDIAVF 212

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++P H+   SG+E+   AKA++F   +++    +N DD +   L AK   + + T YS
Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEYGRRL-AKEATVPVVT-YS 269

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                +AD++  + +    + ++  +  +G+ +       G     N L  +  ++    
Sbjct: 270 AEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLAGPFNVANTLAAIVALAAAGL 329

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D  +A   ++      GR +  R    Q FF ++D ++  +     A  SVL  +    E
Sbjct: 330 DPQSAADGVAAVPGVPGRLE--RVDEGQPFFAVVDYAHKTD-----AVESVLRALRKVTE 382

Query: 369 GRRIAVLG 376
           G+  AVLG
Sbjct: 383 GKLHAVLG 390


>gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
 gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actF]
          Length = 474

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 26/191 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
           + A+  +  +PV+G          + +A RLR    A  +A+TG+ GKTTT  ML+  L 
Sbjct: 86  LFAAAEAAGVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLSAILE 136

Query: 132 SIKKTYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +     A +G    +IGV L    LA  P DV     EL    L         VRPH A 
Sbjct: 137 AAGHRTAAVG----NIGVSLLDAVLAEEPYDVL--AVELSSYQL----HWAPSVRPHSAA 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247
           +  +AP HL     +   A+ K  ++EG  +   ++ + D +  EL++A     G + I 
Sbjct: 187 VLNLAPDHLDWHGSMAAYAADKGRVYEG-NQVACVYNSADPATEELVRAADVEEGCRAIG 245

Query: 248 YSFGKSKNADF 258
           ++ G  + ++ 
Sbjct: 246 FTLGTPRPSEL 256


>gi|296272623|ref|YP_003655254.1| Mur ligase middle domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096797|gb|ADG92747.1| Mur ligase middle domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 478

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 28/281 (9%)

Query: 103 RLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVD 159
           RL+S     IIAIT S GKT+ K  L   L S    Y    S N   G+ L + R +P +
Sbjct: 150 RLQSIKDLKIIAITASYGKTSIKNYLYQILKSKFNAYKTPRSVNTLAGLVLDVNRDLPEN 209

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               I E G    G+I  +++ +    A++  +   H+  F  ++ I   K EI +    
Sbjct: 210 TQIYIAEAGARMQGDIEEISNFLHQDYAILGQVGEQHIEYFKTLDNIIHTKMEILKSP-- 267

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                        +++KA  H      I  + K +     L   K   +  W +V +  K
Sbjct: 268 -------------KMIKAFVHESV--PILDYEKIEKFPNDLNITKSNLDGIWFDVNIDEK 312

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G   A N+   + +   L   +D    AL    P E R ++    +  G  
Sbjct: 313 QEHFYAPILGSFNAVNLTACILMAKELGMSIDQIKIALDKIKPVEHRLQK----IEAGGK 368

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            +ID+S+N N   M  A+++ S+     +GR++ +   + E
Sbjct: 369 VIIDDSFNGNFEGMLEAVNLCSEY----KGRKVIITPGLVE 405


>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
 gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
          Length = 495

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 147/363 (40%), Gaps = 28/363 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           V Q  + GIS  S  +     F AI G   DG  +I +A+++GA L+V  +D+ A     
Sbjct: 24  VEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERGASLIVTESDLTA---RE 80

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++P   VD+    L+ L  A          +I ITG+ GKTTT   L   L       A 
Sbjct: 81  NVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTTALFLQHLLKKAGFEVAY 140

Query: 140 IGSYNNHIGVPLTLARMPV-------------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            G+  N I      +++               + D  + E     L + R     ++   
Sbjct: 141 FGTVYNEITCQRYESKLTTPSATEIQASLAWSNDDVVVIETSSQGLHQYRMAG--MQFDY 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL  +  +E    AK  +F  ++  G   +N    +   L  +  A G + 
Sbjct: 199 ALFTNLQHDHLDYYKTMEAYYQAKKSLFSLMKADGKAVINSYTMWGNRLAKELAANGKQV 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
           +    K     + L K    ++ + +    QG  +E +   + G +  +N+++   ++  
Sbjct: 259 LTVDTKKGATSYVLDK---TTDTAVVAFNGQGGQIEEIEAPLSGVYNQENLILATTVMVD 315

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D     +A++ F    GR + Y  A   G   ++D  Y   P +++A ++ L+   P
Sbjct: 316 LGLDAGNTNEAIADFAGIAGRLEYYPLA--DGNEMVVD--YAHTPDAIEALLTTLNAQYP 371

Query: 366 HGE 368
           + E
Sbjct: 372 NHE 374


>gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
 gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
          Length = 505

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 139/334 (41%), Gaps = 41/334 (12%)

Query: 1   MNPLWTFHDLLQAI--QGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           + P  T   L  AI  QG  I +V P   V G+SIDSR++ P EA FA KG  +    ++
Sbjct: 5   LPPETTLSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGP-EALFACKGAAFKPA-YL 62

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDV--LGALNKLAVAARLRSKATI 110
             A+  GA   + +    +S   LS    GV     DD+    A    A   R   +  I
Sbjct: 63  EDALNAGAAAYLCDE---SSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDI 119

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVD-----FG 163
           + ITG+ GK+TT  +L    ++     + IGS     G+    +    P  VD     F 
Sbjct: 120 MGITGTKGKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFN 179

Query: 164 IFELGMSHLGEIRFLTHLVRP--------HIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
             E G  HL  +   +H ++          +A    I   H+  S     E+  ++K  I
Sbjct: 180 TAESGRKHL-VMEVSSHALKYDRTLGLMLDVACFLNIGRDHISPSEHPSFEDYFASKLRI 238

Query: 214 FEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSW 271
           F   ++  T  +N D D   E+L+   HA   + + +FG  +  AD+  R  + C +   
Sbjct: 239 F---DQCRTAVVNLDSDLVDEVLE---HARRAERLLTFGVDRPEADYSARDVRPCRDGIA 292

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            ++  +G +  +     G   A+N L  + +  I
Sbjct: 293 FDLACEGGARPMTLGMAGLFNAENALAAIAMARI 326


>gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 488

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS195]
 gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS195]
 gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS678]
          Length = 499

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 28/228 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--------- 80
           +++DSR+I   + F A+ G   DG  FI  A+   A  V+V+TD     G          
Sbjct: 23  LTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLSAAAVLVHTDDADQHGKVLHSDNAEH 82

Query: 81  -LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKT 136
            + I VF +   + A+         +S  T   +I ITG+ GKT+T +++   ++S+ + 
Sbjct: 83  GVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLGRK 142

Query: 137 YACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLV 182
            A +G+  N +              +TL R   D +     +  + +S  G ++     V
Sbjct: 143 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVDAV 202

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +AV T +   HL     +E  A+AK  +F      G   LN DD+
Sbjct: 203 PFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDA 249


>gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes 266]
          Length = 529

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 46  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 105

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +  R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 106 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 165

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188
             + G  L  AR     P   D  G+F   M+  G    +  +    +A+          
Sbjct: 166 FRLDGEELPSARTTVTTPESPDLQGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 224

Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K
Sbjct: 225 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 282

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            + +    + +D+Q+  W+     +  +V
Sbjct: 283 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 310


>gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 489

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 149/369 (40%), Gaps = 40/369 (10%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +Q   +G +P+  +  I+IDSRS+ P   F  IKG   DGHD+   AV  GA  V+V   
Sbjct: 11  MQKKVVGQLPK-LITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGA-TVIVTER 68

Query: 74  MVASIGSLS-IPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTI 128
           ++   G ++ + V      LG L     AA+          +I +TG+ GKT+   ++  
Sbjct: 69  LLQLDGEIAQVIVKNTTRTLGIL-----AAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHN 123

Query: 129 ALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH- 185
            L  + +  A  G+   N  GV    A    D      ++      E  R +   V  H 
Sbjct: 124 ILIGLGEKSALSGTIGFNLNGVLYESANTTSD-SLNTQQMIFRAKSEGCRAMVMEVSSHG 182

Query: 186 ------------IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDD 229
                       +AV T +   HL     +E   + K  +F    + LEK   + LN DD
Sbjct: 183 LALGRLAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADD 242

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + E    +   +    I+++G   NA F+       +  +  +++    +  V  H +G
Sbjct: 243 PWSE----RYAGMTPYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLG 298

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L    +       ++  I+ + +  P +GR ++    L    F  ID  Y   
Sbjct: 299 EFNIYNVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSDLPIQIF--ID--YAHT 354

Query: 350 PASMKAAIS 358
           P +++ AI+
Sbjct: 355 PDAIEKAIN 363


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 134/322 (41%), Gaps = 54/322 (16%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T +      V +   L IP          L++  + A L ++   IA+ GS
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEI 175
            GKTTT  M+ + L              +H+G   T+      V   + +LG  + LG  
Sbjct: 121 HGKTTTTSMIGVTL--------------DHVGASPTII-----VGGEVPDLGTNAKLGTS 161

Query: 176 RFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           R+L             +RPHIAV+T +   H+ ++  +E+I +A  +  E ++  G   L
Sbjct: 162 RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIAAFRQFIEQVDTDGAAVL 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            ++++    +  ++     + + S+     AD++    +         V  +G  M  + 
Sbjct: 222 CFENANLRNIARETK----RCVVSYAIDYEADYRASDIETRGSLISFTVHERGAEMGHIS 277

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I G H   N L  + +  ++  +      AL+ FH   G  +R++    +    ++D+
Sbjct: 278 LNIPGRHNVLNALACIAVARLVGVEFPAIRAALAQFH---GAKRRFQTKGKERGVWVVDD 334

Query: 345 SYNANPASMKAAISVLSQISPH 366
            Y  +P  +   ++   Q +P 
Sbjct: 335 -YAHHPTEISVTLAAARQTNPE 355


>gi|88858803|ref|ZP_01133444.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
 gi|88819029|gb|EAR28843.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
          Length = 478

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 112/263 (42%), Gaps = 26/263 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++    A + +  T+  IG   N  G    L           F + 
Sbjct: 116 IAIAGTHGKTTTTSLIASVFAEAELDPTF-VIGGLLNSAGTNAKLGS-------SRFLIA 167

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++VIT I   H+  + G  E +     E    L   G   +  
Sbjct: 168 EADESDASFL-HL-QPMVSVITNIEADHMDTYQGDFENMKDTYIEFIHNLPFYGLAVVCC 225

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD   E++K      G K + ++G+S  AD+++  + Q    S   V   QG S+ V  +
Sbjct: 226 DD---EVVKELIPRFGRKFL-TYGQSSQADYRMSDFVQSGNTSQFVVTDKQGHSLNVKLN 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H A N    + +        D  I+AL+ F   EG G+R+      A  +G   L+
Sbjct: 282 MPGLHNALNATAAIAVAKDEGIADDAIIRALAKF---EGIGRRFEHYGNFATERGDIMLV 338

Query: 343 DESYNANPASMKAAISVLSQISP 365
           D+ Y  +P+ + A I    Q  P
Sbjct: 339 DD-YGHHPSEVAATIKAARQGWP 360


>gi|297519212|ref|ZP_06937598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli OP50]
          Length = 218

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 313 AIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           AIKA L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++     G R
Sbjct: 68  AIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYR 120

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           + V+GDM E+G  S++ H+ + E      I  V   G    A+  A    +  H+++   
Sbjct: 121 VLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT- 177

Query: 432 GLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 178 ALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 214


>gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 494

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 27/233 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVASIGS 80
           +  + +DSR I     F AIKG   DG  FI  A+Q+GA  ++           V  +GS
Sbjct: 27  IQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAAIQQGANAIIAEAGEQNVHGKVEQLGS 86

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +S  V  + D+   L++LA   +  S   +IA+TG+ GKTT  +++   L    +  A +
Sbjct: 87  VS--VVYIADLSQKLSQLASRLQPLSYNQLIAVTGTNGKTTITQLIAQWLELSGQRAAVL 144

Query: 141 GSYNNHIGVPLTLA------RMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHI 186
           G+  N     LT A       + +       E        + +S  G ++     +   +
Sbjct: 145 GTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGAQYTAMEISSHGLVQNRVKALSFSV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELL 235
            V + ++  HL     +EE A AK  +F  +       +N DD    S+ ELL
Sbjct: 205 GVFSNLSRDHLDYHGTMEEYARAKLSLFT-VHDCAKAVINIDDTVGASWVELL 256


>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
          Length = 450

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185]
 gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195]
 gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223]
 gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185]
 gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195]
 gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223]
 gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678]
          Length = 488

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 55/372 (14%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
           D+    +  +   +G + + ++G S +AD Q   + Q   Q    V+ +GK+ +++V + 
Sbjct: 234 DAVVREIMPR---IG-RQLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKADLDLVLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADV--DTAI-KALSVFHPKEGRGKRY----RCALNQGFFT 340
            G H   N+L  L  +++ T D   D+AI +AL  F   +G G+R+    + A  +G   
Sbjct: 290 PGQH---NVLNALAAIAVATEDEIDDSAITQALVEF---QGIGRRFQHLGKFATPKGEVM 343

Query: 341 LIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           L+D+ Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +
Sbjct: 344 LVDD-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFVEV--LSQ---V 397

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           D   +L +Y+     ++G    A   AL RSI +       +  + D L   +   L +G
Sbjct: 398 DCLLLLDVYSAGEAPITG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEG 453

Query: 445 DVVVVKSSNSCG 456
           D+++ + + + G
Sbjct: 454 DLLLTQGAGNIG 465


>gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 487

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 139/370 (37%), Gaps = 36/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR       F A+ G   DGH +I  A+  G+  ++   +      +  +   
Sbjct: 24  IKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSKAIIC--EKYPEHLATHVTYI 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +V  AL  +A        +K  ++A+TG+ GKT+T  +L      +  +   + + +
Sbjct: 82  QVSNVTQALGTIASNFYKNPSTKLKLVAVTGTSGKTSTVHLLYRLFRQLGYSVGMLSTIH 141

Query: 145 NHI---GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------------AV 188
           N I     P TL   P  +D       M   G  +F       H              A+
Sbjct: 142 NQINDQAFPSTLT-TPNAIDINKALAQMVTAG-CQFCFMEASSHAIVQNRLAGLELAGAL 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              I+  HL      +    AK ++F+ L     +  N DD   +++   + A    T Y
Sbjct: 200 FLNISHDHLDYHLTFDAYIQAKKKLFDELTANAFVLYNIDDKRGKIMIQNTRA----TTY 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    + ADF      Q    +W  ++L+     V    +G   A N+L       +L  
Sbjct: 256 SMAIQRPADF----TAQVLANTWQGLELRIGGQNVWFQLLGTFNASNLLAAYATACLLGQ 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI--SPH 366
                + ALS   P  GR +            +ID  Y   P +++  +  + QI  S  
Sbjct: 312 PSQDILVALSSIKPITGRFQHIHTPKKPD--VIID--YAHKPEALEKILLSIQQIRESAK 367

Query: 367 GEGRRIAVLG 376
            +G+ I ++G
Sbjct: 368 QQGKIITIIG 377


>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae P1031]
 gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae 70585]
 gi|254766057|sp|C1C648|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766061|sp|C1CJF2|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 70585]
 gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae P1031]
 gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV104]
 gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47901]
          Length = 450

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|284030820|ref|YP_003380751.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
 gi|283810113|gb|ADB31952.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
          Length = 479

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 32/290 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HI 147
           L + A  A + +    IA+ G+ GKTTT  MLT+AL   +   +YA  G+ N      H 
Sbjct: 102 LPRAAALASVMAGRRTIAVAGTHGKTTTTSMLTVALQHCAADPSYAIGGNLNESGSNAHD 161

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G              G   +  +   +  FLT+   P ++++T++ P HL N+       
Sbjct: 162 GT-------------GDLFVAEADESDKSFLTY--GPEVSIVTSVEPDHLDNYGDEASYT 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            A  +  + +   G + +  DD+    L   +   GI  + ++G+S +AD ++ +     
Sbjct: 207 KAFEDFCDRVLPGGFLVICVDDAGARRLAGFARERGID-VRTYGESADADLRVTEITATG 265

Query: 268 E-QSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             QS++ V  +G+ + VV+    G H A N    L +   L        + L+ F    G
Sbjct: 266 AVQSFVPV-WRGRKLPVVNLQQAGKHNALNASAALAVGLGLGFSAADLAEGLASF---TG 321

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            G+R+     +    + D SY  +P  +   ++   Q++  GEGR IA  
Sbjct: 322 TGRRFEFKGQEDGVRVYD-SYAHHPTELAVDLTAARQVA--GEGRVIACF 368


>gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 495

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 150/380 (39%), Gaps = 59/380 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S+ S  + P + + A+ G    G +F+  AV++GA  V+ ++  V +     +P  
Sbjct: 35  VTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVAVLSDSWGVEAAVEHGLPAL 94

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              D   A   +  AV      + ++I ITG+ GKT+T  ++   L +  +    IG+  
Sbjct: 95  HHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTGLIGTVE 154

Query: 145 NHIGVPLTLAR--MPVDVDFG-----IFELGMSHLGEIRFLTHLVRPH--------IAVI 189
             IG    ++    P   +         E G++ +  +   +H +  H        +   
Sbjct: 155 TRIGAETIVSERTTPEATELQALFAYALEQGVTDI-VMEVSSHALTLHRAEGISFAVGGF 213

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T     HL     ++E  +AKA++F+G  +     +N DD++ + L            YS
Sbjct: 214 TMFGLDHLDFHPTVDEYFAAKAKLFDG--RCRVEVVNADDAWAKRLVTPD-----TVTYS 266

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVS 304
                NA + +        +QS+      G+     HHG     G H   N L+  G ++
Sbjct: 267 L-VDANATWSVDSITGSGFDQSFEVTSPHGR-----HHGSVRLPGRHNIANALLAYGCLT 320

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE--------SYNANPASMKAA 356
            +   V+TAI  ++             CA   G   L+ E         Y   P ++ A 
Sbjct: 321 AVGVPVETAIAGVA------------DCAGVPGRMELVSEDNPVHGVVDYAHKPDAITA- 367

Query: 357 ISVLSQISPHGEGRRIAVLG 376
             VL  + P   G  IAV+G
Sbjct: 368 --VLEALRPITSGSLIAVIG 385


>gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
 gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
          Length = 495

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 29/222 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR       F AIKG   DG +FI+ A+Q GA  V+  TD+V    ++S    IP+  
Sbjct: 28  LDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVSFEQNIPLIA 87

Query: 88  VDDVLGALNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             ++   L+   +A R  S    + T++ +TG+ GKTT  ++L      +  T A +G+ 
Sbjct: 88  YYELSKHLSH--IADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHTSAVMGTI 145

Query: 144 NN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N                I +  +L + +    DF   E+  SH G ++     +     
Sbjct: 146 GNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVS-SH-GLVQHRVEALTFRAG 203

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           + T ++  HL     +E  A AK  +F  L     I LN DD
Sbjct: 204 IFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKI-LNVDD 244


>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
          Length = 450

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|330469289|ref|YP_004407032.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
 gi|328812260|gb|AEB46432.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
          Length = 510

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 37/288 (12%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH-IGV 149
           A+AA +  + T+ A+ G+ GKT+T  M+T+            I    + +GS  +H  G 
Sbjct: 107 ALAAAMTGRRTV-AVAGTHGKTSTTSMVTMVFQQAGADPSFVIGGEISEVGSGAHHGTGE 165

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              +     D  F I+                 RP ++++T I   HL+ +  +  + + 
Sbjct: 166 YFVVEADESDRSFLIY-----------------RPFVSIVTNIEADHLNTYGDLANLEAT 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            AE     +  G I    DD+  + L A   A G + +Y++G+S +AD +L +    +  
Sbjct: 209 FAEFARLTDPDGFIITCADDAGGQRLAATLRAQG-RRVYTYGESADADLRLSEMASSARG 267

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                 + G+S+      + G HMA N    +    +L   +  A  AL+ F    G  +
Sbjct: 268 VRYLAHIDGRSLGEFRMPVPGRHMALNSASAVLAAYLLELPLQAAEAALAAF---PGVRR 324

Query: 329 RY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           R+ R  +  G   L+ + Y  +P SM  A+  L +++  GEGR + V 
Sbjct: 325 RFERKGVADGV--LVYDEYAYHPTSMTLALQTLREVA--GEGRLLVVF 368


>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
 gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
          Length = 491

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 155/405 (38%), Gaps = 45/405 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I+ DSR + P   F  I G   DGH F   A + GA  ++    +      ++IPV 
Sbjct: 23  VNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELGAVAIIAEKTV-----DVAIPVI 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+  
Sbjct: 78  YVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137

Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG          P +L             V   + E+    L + R   +     +AV
Sbjct: 138 RKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242
              ++  HL     +EE A AK+ +F  L  +          LN DD     ++  + A 
Sbjct: 196 FMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKIAVLNADDEESVRMQTATAA- 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG    ADF+    +  S  S  ++   G   ++    IG     N+L  +  
Sbjct: 255 ---HVITFGIKAAADFRASNIQITSHGSTFDLDTPGGHFKLKIKMIGNFSVYNVLAAIAT 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +D AI  +      +GR +       Q F  ++D  Y+  P  +   ++VL  
Sbjct: 312 SYALHIPLDNAISTVEAIPGVKGRFELVHAG--QDFPVIVD--YSHTPDGL---LNVLQT 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           IS   E R   V+G  C  G+  +     +A+V   Y  + V+ S
Sbjct: 365 ISEFAEKRVFVVVG--C-GGDRDKGKRPQMAKVAVKYATNPVFTS 406


>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
 gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
          Length = 500

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 147/386 (38%), Gaps = 63/386 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A    +   ++  +I ITG+ GKTTT  +L   L+        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYSYPSNEMKLIGITGTNGKTTTSYLLEKILTDYGFQTGIMG 144

Query: 142 SYNNHIGVPLTLARMPVDV--------------------DFGIFELGMSHLGEIRFLTHL 181
             NN  GV +     P D+                    D+ + E+    L       H+
Sbjct: 145 --NN--GVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYCVMEVTSQGL-------HM 193

Query: 182 VRP-----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDS 230
            R       IAV T +   HL      EE    K  +F  L             LN DD 
Sbjct: 194 ERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSATDKKIAILNADDP 253

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E  K  + A     + ++G +  AD Q +     S+     V      +E+  + +G 
Sbjct: 254 SVEYFKKVTSA----EVITYGINNGADVQAKSITLSSKGIQFLVSSFNGEIEINLNLVGR 309

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L    I + L   +     + S+ H K   G+      NQ F  ++D  Y  +P
Sbjct: 310 FNVYNALAV--ITATLVEGIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVD--YAHSP 365

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++   +VLS IS   + + I V G
Sbjct: 366 DALE---NVLSTISEFSKAKIITVFG 388


>gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae 2603V/R]
 gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae A909]
 gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
 gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|30316025|sp|Q8E186|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063264|sp|Q3K2P4|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 2603V/R]
 gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae A909]
 gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
          Length = 451

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ +I ITGS GKTTT  M+   L++  +     G    +IG P + + +   D 
Sbjct: 106 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAANDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +
Sbjct: 162 DTLVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L   + A    TI  F  ++  D    + KQ        +  +G++
Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265

Query: 281 -MEVVHHGI-GYHMAQNMLMTLGIVSI 305
            M V   G+ G H  +N L T+ +  +
Sbjct: 266 IMSVDDIGVPGSHNVENALATIAVAKL 292


>gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
 gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
          Length = 498

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 24/322 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + I+ DSR   P   F A  G   DG  F+  AV  GA  ++          +L++P FG
Sbjct: 18  DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDGDGFCAPALAVPGFG 77

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V  +      LA  +  R      +  +TG+ GKTT  +ML  AL  + +    +G+   
Sbjct: 78  VRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVGTLGC 137

Query: 146 HI------GVPLTLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHIAVITT 191
                   G+  T   + +   F  F         + +S +G  +   +  +  +A+ T 
Sbjct: 138 GFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVAIFTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E  A+AKA +FE  E +  + +N DD +   L  +    G   I    
Sbjct: 198 LSRDHLDYHGTMEAYAAAKARLFERPELSACV-INIDDPWGLALARRLVVEGRAVIACTL 256

Query: 252 KSKNADF-----QLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + NAD       LR  +  +  + +   L  +G+  E+    + +    N++   G + 
Sbjct: 257 YAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAVAGALL 316

Query: 305 ILTADVDTAIKALSVFHPKEGR 326
                 D     L    P +GR
Sbjct: 317 ARGIAFDELPPVLGRLAPPQGR 338


>gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 476

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+ I   S  I     + GIS DSR I     F A KG  +DGH +I  A++ GA  ++
Sbjct: 6   ILKEISYISKNIQNDKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNGANTII 65

Query: 70  -VNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEML 126
             N D+    G   I    V D   AL K++ + +   SK+  +I +TG+ GKTTT  ++
Sbjct: 66  YTNDDINFESG---INYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTTANLI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
              L+ +    A IG+     G  L    MP +
Sbjct: 123 AFVLNKLGSPCANIGT----DGADLINKTMPTE 151


>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 150/359 (41%), Gaps = 27/359 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           + Q  V  I  DSR ++    F A++G H DG D+I  A+  G  ++V       S  S 
Sbjct: 29  IAQCQVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCRIIVTELPRPES-ASD 87

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    V D   A+  LA     R   + TI+ +TG+ GKTTT  +     S +    A 
Sbjct: 88  EVVWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAAL 147

Query: 140 IGSYNNHIG---------VP--LTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPH 185
             +    IG          P  L L R+  D VD G   L M  S    ++   + +   
Sbjct: 148 FSTVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFA 207

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+ T +   HL     ++   +AK  +F+ L       +N DD    ++     A    
Sbjct: 208 LALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTPDAYALVNADDRNGSVMVQNCAA---- 263

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            ++++    +AD+  +   Q  + S +   L  + +E+    +G + A N+    G+  +
Sbjct: 264 HLHTYAMRSHADYMAQLLGQYVDGSTL--LLDNEEVEI--KLVGSYNAYNVTAVYGVARL 319

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L  D+D ++    +   +   G+    A  +G+  ++D  Y   P +++  +  +S+++
Sbjct: 320 LLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELN 376


>gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41317]
          Length = 450

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEALIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
 gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
          Length = 497

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 142/375 (37%), Gaps = 33/375 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           Q  V G+S+DSR       F A+ G +  G  FI  A+++GA  V+ + +  A    L  
Sbjct: 23  QALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGAAAVLTDAEGAALARDLLD 82

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------EMLT 127
             ++ +   +D    L+  A          +IA+TG+ GKT+              E + 
Sbjct: 83  GAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTSVASFTRQIWAELGFEAVN 142

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLV 182
           +  + ++  Y    ++      P+TL R+  +     V     E     L + R     V
Sbjct: 143 LGTTGVEGAYQVPLAHTTP--EPITLHRVLAECQAAGVTHAAMEASSHGLAQRRL--DGV 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241
           +   A  T     HL   +  +E   AKA +F   L + GT  +N DD     +   +  
Sbjct: 199 QLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINIDDPRGAEMAEIARH 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + I   G+   AD  LR  +  +    M    +G+  +     IG    +N+L+  G
Sbjct: 259 RG-QGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLIGGFQGENLLLAAG 317

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     AD       L       GR          G    +D  Y   P ++  AI  L 
Sbjct: 318 LAIATGADPSRVFDTLPQMRTVRGR-MELAATRENGAAVFVD--YAHTPDAVGTAIRAL- 373

Query: 362 QISPHGEGRRIAVLG 376
              PH  GR IA++G
Sbjct: 374 --RPHVMGRLIAIVG 386


>gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
 gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
          Length = 462

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 55/374 (14%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   RLR     IAI+GS GKTTT  +++  +        CI    NH  +    A   
Sbjct: 100 LAELMRLRYG---IAISGSHGKTTTTSLISQIMMHAGLNPVCIIG-GNHFNLKSNAACND 155

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           +  ++ + E   S    +R     + P I V+T I   HL  +  +E +  A  E    +
Sbjct: 156 LSSEYMVCEADESDGSFLR-----LSPVINVVTNIDNDHLDYYGNVEALRVAFLEFINKV 210

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G  FL ++D+  + L   ++    K  YS+G SK+ DF +       ++  + V+  
Sbjct: 211 PFYGCSFLCFEDNVVKDLSKSAN----KKYYSYGFSKDYDFYV-------DRDSIRVEAP 259

Query: 278 GKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  H+           IG H   N L ++G+   L  D+    + L  F   EG G
Sbjct: 260 ITYFTAYHNSECLGEFSVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTF---EGVG 316

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGD 377
           +R    L     TL D+ Y  +P  +KA +S          +++   PH   R   +L D
Sbjct: 317 RRLN-KLYDKEITLFDD-YAHHPTEIKATLSSVRNAYKNRRIIAVFQPHRYSRTELLLND 374

Query: 378 MCEMGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLF 434
                    +F+ D  EV+   +Y      + G     + D + + + HV Y   ++ + 
Sbjct: 375 ------FEYAFN-DADEVIISDIYAAGESPIPGISGEIICDVVRKQNNHVRYIPNIEDVL 427

Query: 435 LFIQSSLVDGDVVV 448
             +     DGD+++
Sbjct: 428 PVLDDIKKDGDIIL 441


>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
          Length = 450

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEALIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
 gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
          Length = 532

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 32/294 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+S+DSRSI P + + A+ G    G  F+  A   GA  V+ +   V    +  +P+
Sbjct: 66  LVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTAGLPL 125

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V D    L    VAA +  + T    ++ ITG+ GKTTT  +L   L  +    A +G
Sbjct: 126 LVVPDPRAVLGD--VAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLGPA-ALVG 182

Query: 142 SYNNHIGVPLTLARM--PVDVDFGIFELGMSHLG----EIRFLTHLV--------RPHIA 187
           +    IG  +  + M  P   D       M   G     +   +H +        R  +A
Sbjct: 183 TIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGARYSVA 242

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T ++  HL      E+  +AKA +F   E+     +N DD +   L A++    +  +
Sbjct: 243 GFTNLSQDHLDFHKTFEQYFAAKASLFT-PERCDLAVVNIDDKYGRRLAAQT----VVPL 297

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNML 297
            +   +++AD+ +    Q SE     + ++G     ++E+V  G  +++A  +L
Sbjct: 298 VTVSTTRDADWTVAGTHQ-SEHGGTVIDIRGPGEALTVEIVLPG-DFNVANALL 349


>gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 485

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 148/372 (39%), Gaps = 38/372 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR++ P + FFA+ G   DG  FI  A+  GA  V V  D   + G   +P  
Sbjct: 22  VTGLAADSRAVKPGDLFFALAGSKTDGARFIDAAIASGA--VAVAGDHAPARG--RVPFI 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              +   AL   A     R  ATI A+TG+ GKT+           +    A IG+    
Sbjct: 78  ATPNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGYLSASIGT---- 133

Query: 147 IGVPLTLARM---------PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187
           +GV +  +R          P+++   + +L   G++HL       G  ++    VR   A
Sbjct: 134 VGV-VAPSRAVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRVDGVRVRAA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  H+     +      K  +F  L E  G   +  D    + +   + A  +  
Sbjct: 193 GFTNLSRDHMDYHPTVAHYLETKLRLFRDLVESDGIAVICADHDCSDTVIEAAGARNVPV 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    +   A   +R  +   +     V L+  G+   +    +G    +N L++ G+V 
Sbjct: 253 MRVGRRGDGARMGIRLVEAAIDGFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               DVD A  AL   H +  RG+  R     G    +D  Y   P ++  A+  L    
Sbjct: 313 GTGGDVDQAFAALE--HLEGARGRIERIGERNGAQVFVD--YAHKPDALAKALQAL---R 365

Query: 365 PHGEGRRIAVLG 376
           P+ + + + V G
Sbjct: 366 PYAKRKLVVVFG 377


>gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
 gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
          Length = 474

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
           + A+  +  +PV+G          + +A RLR    A  +A+TG+ GKTTT  ML   L 
Sbjct: 86  LFAAAEAAGVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILE 136

Query: 132 SIKKTYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +     A +G    +IGV L    LA  P DV     EL    L         VRPH A 
Sbjct: 137 AAGHRTAAVG----NIGVSLLDAVLAEEPYDVL--AVELSSYQL----HWAPSVRPHSAA 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247
           +  +AP HL     +   A+ K  ++EG  +   ++ + D +  EL++A     G + I 
Sbjct: 187 VLNLAPDHLDWHGSMAAYAADKGRVYEG-NQVACVYNSADPATEELVRAADVEEGCRAIG 245

Query: 248 YSFGKSKNADF 258
           ++ G  + ++ 
Sbjct: 246 FTLGTPRPSEL 256


>gi|325519756|gb|EGC99063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 161

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 22/162 (13%)

Query: 315 KALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRI 372
           + L  F P +GR +  R  +      T++D++YNANP SM+AAI VL+ Q +P     R+
Sbjct: 3   QGLEAFEPVKGRLQVRRATVGGLAGATVVDDTYNANPDSMRAAIDVLAGQPAP-----RV 57

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--- 429
            V+GDM E+G+   +FH ++        +  ++       AL DA  R     Y +T   
Sbjct: 58  LVIGDMGEVGDEGPAFHREIGAYARERGVDALF-------ALGDA-SRDACTAYGDTARH 109

Query: 430 MDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
              +   +++ L  G      V+VK S      R+++ L  +
Sbjct: 110 FGDVGALVEALLASGYDAAATVLVKGSRYMKMERVVDALTNQ 151


>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
 gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
          Length = 450

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGEH----GLLSGNIGYPASQVAQIASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|57237640|ref|YP_178888.1| Mur ligase family protein [Campylobacter jejuni RM1221]
 gi|121613032|ref|YP_001000484.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005421|ref|ZP_02271179.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|57166444|gb|AAW35223.1| Mur ligase family protein [Campylobacter jejuni RM1221]
 gi|87249533|gb|EAQ72493.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315058249|gb|ADT72578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 475

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 35/306 (11%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           K    A+LR+     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201

Query: 155 R-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +  D    I E G    G+I  +T  ++PHI+++  I   HL  F  +E I S K E 
Sbjct: 202 NNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNVHLEYFKSVENILSTKLEA 261

Query: 214 FEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                LEK               L + +   G K I  +      D +L       E   
Sbjct: 262 LNSKRLEKA-------------FLHSSTQKEGDKLISLY------DEKLSLIHSSLEGLE 302

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +V ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +   
Sbjct: 303 FKVDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ--- 359

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L++    +ID+ +N N   M  +     ++    +GR++ V   + E+ E     +I 
Sbjct: 360 -VLSREPKFIIDDGFNGNFKGMSTSY----KLCKSYKGRKVLVSPGIVEVSEEE---NIK 411

Query: 392 LAEVLS 397
           LA++++
Sbjct: 412 LAKIIN 417


>gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
 gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
          Length = 506

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 162/396 (40%), Gaps = 42/396 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIGSLSIPV 85
           G++ DSR +     FFA+ G H+DG +FI  A+++G+ ++V   D+     ++  + I  
Sbjct: 33  GLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINFYDPNVTYIKIDS 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             +   +     +      ++   II +TG+ GK++    +   L S+      I +   
Sbjct: 93  CNIKKFMSNFAHIFYNEPSKN-LKIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFF 151

Query: 146 HIG------------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR--P 184
             G                  + L L++M   +V++ I E   SH  +IR  + L+    
Sbjct: 152 EDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVE-STSHGLDIR-TSRLIDIAY 209

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALG 243
            +AV+T ++  HL     ++   +AK  +F   +  G    +N DD  F           
Sbjct: 210 FVAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIINMDDKNFSTFLNT----- 264

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I   Y++  ++KNADF + K  +    +  E   +    +   +  G    +N++  L +
Sbjct: 265 INRAYTYSLENKNADFFVSKINEQMGFTEFEFYHKNVKYDARVNLTGSFNVENVMAALIV 324

Query: 303 VS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           VS ++  DV   I  L       GR +       Q F  +ID  Y   P +      +  
Sbjct: 325 VSQVMNVDVSELIDKLVNIEGLFGRMQ--GVDFGQDFSLIID--YAHTPGAFLKIFPIFK 380

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++S   + R I+V G   E   L +    ++A+  S
Sbjct: 381 RLS---KNRLISVFGSAGERDVLKRKLQGEIADRYS 413


>gi|65317674|ref|ZP_00390633.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 247

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R          T+I+++YNA+P +M+AA  +++ +   G  ++I VLGDM E+G+   
Sbjct: 108 GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 165

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSLV 442
            FH ++ +++    IS+V+  G     + +      P    V   +  + L   +Q+ + 
Sbjct: 166 QFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPNE-RVKAYDNKEELVKELQAVVD 224

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
             DVV+VK+S       +I +L
Sbjct: 225 TKDVVLVKASRGMKLEEVITML 246


>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254766062|sp|C1CQG4|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA04375]
 gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41301]
 gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47368]
          Length = 450

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 NTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMAAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 504

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 137/348 (39%), Gaps = 27/348 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  IS DSR ++    FFA KG   DGH +I  A++K A  +V  +++     S ++   
Sbjct: 34  ITSISYDSRKVSEGSMFFAWKGQKTDGHCYIGEAIEKRARAIVC-SEIPRLYVSQAVTFL 92

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D    L K A           +++ +TG+ GKTTT  +    L         IG+  
Sbjct: 93  KVRDPRRTLGKAASLYYGNPSQHLSLVGVTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVC 152

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
           Y+       +    P   D       M   G  R     V  H             + + 
Sbjct: 153 YDTTESCIPSSRTCPEGSDLQYMLYRMVQAG-CRAAVVEVSSHALDQGRIEGSNFRVGIY 211

Query: 190 TTIAPAHLSNFSGIEEIASAK----AEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGI 244
           T     HL     +EE   +K    A I  G E  G + LN DD  + LL  K    + I
Sbjct: 212 TNFTQDHLDYHLTMEEYRRSKENFIAYIRGGKEGDGGVVLNLDDPQWRLLAEKLRKKMRI 271

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T+ S G+ K AD +          +   ++  GK  +V    +GY    N L++LG V 
Sbjct: 272 VTVSSEGR-KEADLKAGSISCDRFSTKFVLEWAGKVFKVKSSLLGYFNVDNALLSLGGVL 330

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           +L   ++ +I  L  F    GR ++Y      G   +ID +++ +  S
Sbjct: 331 LLGIPLEQSISFLEFFPGVPGRMEKYYS--KDGLLVVIDYAHSEDALS 376


>gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 22/231 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +        +  +PV 
Sbjct: 35  VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPSGAERAAATGLPVL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             ++    + +LA     R    +  I ITG+ GKTTT  ++   L + K T   IG+  
Sbjct: 95  VAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTTTAYLVEGGLRTAKST-GLIGTVE 153

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             IAV 
Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDIAVF 212

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKS 239
           T ++P H+   SG+E+   AKA++F     + G +  N DD +   L A++
Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGVV--NTDDEYGRRLAAQA 261


>gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 488

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 28/273 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGV 149
           L  L++  + A L  + T I ++GS GKTT   ++T    + KK  +YA IG  N+    
Sbjct: 88  LPILHRSELLAFLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYA-IGGLNS---- 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIAS 208
            L+L       ++ I E   S      +L     P +AV+T +   HLSNF G  E++A 
Sbjct: 143 -LSLNGYSGSSEYFIAEADESDGSLKHYL-----PKVAVVTNLDNEHLSNFEGSKEKLAL 196

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
              E    +E     F N D    + LK +          S+G S++ + ++  + Q   
Sbjct: 197 TIEEFTRKVEDPRLCFYNGD---CQELKGRISGT------SYGFSQDCNLRIHSYYQDGW 247

Query: 269 QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +S   +   GK  +++  + IG H   N  + +GI   L  D ++  +AL  F   + R 
Sbjct: 248 RSLFSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFSGIQRRM 307

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           +R   +    FF    E Y  +P+ +   +  L
Sbjct: 308 ERKNVSEKFLFF----EDYAHHPSEISCTLRGL 336


>gi|167740315|ref|ZP_02413089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 14]
          Length = 189

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 8/84 (9%)

Query: 312 TAIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368
            AIKA L  F P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P   
Sbjct: 27  AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 83

Query: 369 GRRIAVLGDMCEMGELSQSFHIDL 392
             R+ V+G+M E+G+   +FH ++
Sbjct: 84  --RVLVIGEMGEVGDEGPAFHREI 105


>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
 gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|226722948|sp|B2IN76|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
          Length = 450

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307


>gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces bingchenggensis BCW-1]
          Length = 544

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 156/412 (37%), Gaps = 47/412 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +
Sbjct: 58  EAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAADLGAVAVLTDPGGADRAAATGL 117

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKT----- 136
           PV  V++  G +  LA          +  I ITG+ GKTTT  ++   L +         
Sbjct: 118 PVLVVENPRGRMGALAATIYGEPGRDLLQIGITGTSGKTTTAYLVEGGLKAAAAKGDGSL 177

Query: 137 YACIGSYNNHIGVPLTLAR--MPVDVDF----------GIFELGM---SH---LGEIRFL 178
              IG+  + IG     +    P   D           G+  L M   SH   LG +   
Sbjct: 178 TGLIGTVESRIGDERIKSERTTPEATDLQALFAVMRERGVGSLAMEVSSHALVLGRVDGC 237

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                  +AV T ++P H+   S +E+   AKA++F        + +N DD + + L   
Sbjct: 238 VF----DVAVFTNLSPEHMEFHSDMEDYFQAKAQLFTKARSRAAV-INLDDEYGKRLVDL 292

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S       + +F    + D   R           E  + G + E V        A N+  
Sbjct: 293 SEV----PVTTFSAEGHPDAHWRAADVTVGPLGSEFTILGPNGESVTAAAPLPGAFNVAN 348

Query: 299 TLGIVSILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           TL  V  L     D  TA   ++      GR +R      Q +  ++D ++  +     A
Sbjct: 349 TLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDA--GQPYLAVVDYAHKTD-----A 401

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             SVL  +    EGR  AVLG  C  G+  Q     +   ++ Y  + V  S
Sbjct: 402 VESVLRALRKVTEGRLHAVLG--C-GGDRDQQKRGPMGAAVARYADTAVLTS 450


>gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 481

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 25/270 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  S A  I ITG+ GKT+T EM +  L +   T   +G    +IG  L+ A +    D 
Sbjct: 101 RTGSPAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAVG----NIGNALSAAALDPVNDV 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      T+ +    A IT IA  HL    G+   A+ K+++F+G ++   
Sbjct: 157 LCVELSSFQL----HFTYSLELDCAAITNIAADHLDWHGGMANYATDKSKVFDGAKR--V 210

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTI-YSFGKSKNADFQLRK-W-----KQCSEQSWMEV 274
           I  N  D+   EL +    A G + I ++ G+  +    ++  W       C  Q+  E 
Sbjct: 211 IAYNAQDARVSELARTAQTAEGCEHIGFTLGEPVSGQIGIKDGWIVDMSGLCGGQT-GEA 269

Query: 275 QLQGKSMEVVH----HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                  +  H     G  Y H+  + L  L +V  L ADV TA+ AL  F P   R + 
Sbjct: 270 YALAPIADFTHLAEPDGTIYPHLLADALTALILVVGLGADVATALNALKRFAPGGHRIQT 329

Query: 330 Y-RCALNQGFFTLIDESYNANPASMKAAIS 358
               A  +G    +D+S   N  + +A+++
Sbjct: 330 VAELASPEGTIRFVDDSKATNAHAARASLN 359


>gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
 gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
          Length = 471

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 8/152 (5%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + L+ P  A +  + P HL     +E  A+AK  IF+ L       ++ +D +      +
Sbjct: 179 SRLLHPRCAALLNVTPDHLEWHGSLEGYAAAKERIFQNLSGDDLAVVSQEDGYCRDAIGR 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294
             A G++T++   + +    +           W+ V+L G    V         G H AQ
Sbjct: 239 LEARGVRTLHVGVREEPVSGE----AAFVRDGWLTVRLDGGERRVAPMANLPLRGEHNAQ 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           NML    +   L A V+   +AL  FHP E R
Sbjct: 295 NMLAASSMALFLGASVEAVRRALEGFHPIEHR 326


>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
           ligase mure [Rhodococcus equi 103S]
 gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
           6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
          Length = 501

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 151/386 (39%), Gaps = 40/386 (10%)

Query: 16  GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           GH +   P   +  + G+  DSR + P + + A+ G  + G DF   A  +GA  V + +
Sbjct: 26  GHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEASARGA--VAMLS 83

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIAL 130
           D  + I    +P   VDD   AL  LA  A     +   +  +TG+ GKT+T  +L  AL
Sbjct: 84  DRPSDI----VPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNGKTSTVYLLEAAL 139

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGM---SH-LGE 174
            +   +T    G      G      R   +           V+ G+  + M   SH L E
Sbjct: 140 VAAGLRTGVVTGVTVRGPGTARPATRTTPEACELQQSFVEFVEEGVDAVAMEVSSHGLAE 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R      R  + V T +A  HL     +E   +AKA +F G +      +  DD +   
Sbjct: 200 HRIDGS--RFDVGVFTNLARDHLDYHPDMEAYYTAKARLF-GRDLCERAAVCIDDDYGRR 256

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  +   + +  +    +   AD      +     S   +  +G+ + V    +G H   
Sbjct: 257 LAGE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVRLRVLGGHQVD 313

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  L  +S+   D+  A+  +       GR +  R  + Q F  L+D  Y  N A   
Sbjct: 314 NAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE--RVDVGQPFLALVD--YVHNTAGQH 369

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCE 380
                L  ++P   GR + VLG   E
Sbjct: 370 RLFPYLRSVTP---GRIVVVLGATGE 392


>gi|228993421|ref|ZP_04153337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
 gi|228999465|ref|ZP_04159044.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229007021|ref|ZP_04164649.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228754260|gb|EEM03677.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228760410|gb|EEM09377.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228766489|gb|EEM15132.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
          Length = 436

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 146/371 (39%), Gaps = 67/371 (18%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           HD+   +QG       + F   ++++ R  SI P                F  + V++G 
Sbjct: 22  HDMKHTVQGSDF---EKRFFTQVALEKRGISILP----------------FDKNNVKEGQ 62

Query: 66  GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++  N      + + +   L+IPV      LG          L SK T +A+TG+ GKT
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------NLMSKYTSVAVTGAHGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178
           +T  +L   +     T   IG    H GV         +  + +FE       E R  FL
Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           ++   P  A++T I   H   F+ I ++ SA  E+   L+    I    DD   + ++AK
Sbjct: 160 SYY--PDYAIMTNIDFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297
              +     Y FG  ++ DFQ R  ++ ++ +  +V ++    E     G G H   N L
Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F    G  KR       G   +ID+ Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF----GGVKRRFNEKPMGEQVIIDD-YAHHPTEINATI 324

Query: 358 SVLSQISPHGE 368
               Q  P  E
Sbjct: 325 EAARQKHPERE 335


>gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 489

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 25/225 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR +   + F A+KG  +D   F+  A+  GA  V++ TD+     S+    +
Sbjct: 18  VKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSIQWQNN 77

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV     +   L+ LA         K T++ +TG+ GKTT  ++L    + +    A +
Sbjct: 78  VPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGHKAAVM 137

Query: 141 GSYNN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+  N                + V   LA  +    DF   E+    L + R     ++ 
Sbjct: 138 GTIGNGLLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQYR--VEALKF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             A+ T ++  HL     +E+ A AK   F  L     I LN DD
Sbjct: 196 KSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQI-LNADD 239


>gi|295398675|ref|ZP_06808699.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
 gi|294973110|gb|EFG48913.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
          Length = 462

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 123/305 (40%), Gaps = 50/305 (16%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK----EML 126
           N  MV     + +PV+           + +A ++ + ATII ITGS GKTTT     EML
Sbjct: 89  NNPMVVRAQEIGLPVY---------TDIELADKM-TDATIIGITGSNGKTTTTSLVGEML 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             A S   ++Y        +IG+P L +A      D  I EL    L      T   +PH
Sbjct: 139 GKAASLAGESYVG-----GNIGIPSLDIASKAEADDRLILELSSFQL----MGTDAFQPH 189

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFE-LLKAKSHAL 242
           IA IT I  AHL     ++   SAK +I         + LN D  D F +   KA     
Sbjct: 190 IAAITNIYAAHLDYHGSMDGYISAKWQITANQTTDDFLILNADQMDVFGDRTTKATVVPF 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              TI   G   + D Q   W         E+ L  K   +     G+H  +NML+ + I
Sbjct: 250 SATTIQPDGAWFDQDSQNFIWHD-------EIVLNRKDFFLP----GHHNLENMLVAVAI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNANPASMK-AAISV 359
             +L    +     +S FH     G ++R      F   ID    YN + A+   A+I+ 
Sbjct: 299 GKLLGISNEEIKNGVSTFH-----GVKHRLQ----FVAEIDGRRFYNDSKATNNDASITA 349

Query: 360 LSQIS 364
           L   S
Sbjct: 350 LDSFS 354


>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
          Length = 450

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A++  D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 NTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 10403S]
          Length = 491

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +  
Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AIK +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P  +   ++VL  I    + R   V+G
Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAKKRVFVVVG 378


>gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
 gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
          Length = 488

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
 gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
          Length = 459

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 43/380 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141
           +P+    ++LG +        +++    IA++G+ GKTTT  M+T I L++       +G
Sbjct: 94  LPILSRAELLGQM--------MKNYENSIAVSGTHGKTTTTSMITEILLAAEADPTISVG 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              N IG  + +         G+F           FL+    P + VI  I   HL  F 
Sbjct: 146 GILNSIGGNIRVGGP------GLFVTEACEYTN-SFLSFF--PTMEVILNIEADHLDFFK 196

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            I++I  +     E L   G++ +N D    E  +  +  L  + I ++GK   + +Q  
Sbjct: 197 DIKDIRHSFRLFAEKLPPNGSLVINND---IESREEITEGLPCQVI-TYGKKPGSRYQAE 252

Query: 262 --KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             ++ + +  ++ +++L G  ++ V  G+ G H   N L    + + L  + D   K L 
Sbjct: 253 AIRFDEYARATY-DLKLDGNVVDTVTLGVPGEHNVYNSLAAAAVCTELGIEFDLIKKGLK 311

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEG 369
            F    G  +R+         T+ID+ Y  +P  ++A +                PH   
Sbjct: 312 RF---TGTNRRFEKKGELSGVTIIDD-YAHHPQEIRATLETAKHYPHNKLWVAFQPHTYT 367

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R  A L +  +   LS +  + LA++ +      + +S   +   +    R +  HY  +
Sbjct: 368 RTKAFLEEFADA--LSLADEVILADIYAARETDDLGISSGDI--AERIGKRGVKAHYFSS 423

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
            D +  FI  + + GD+++ 
Sbjct: 424 FDEIETFILENCIHGDLLIT 443


>gi|260495142|ref|ZP_05815270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
 gi|260197199|gb|EEW94718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
          Length = 432

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 23/255 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFG 163
           R K  +IAITG+ GK+TT    T  +S +        +Y  +IG  L+   +   D+DF 
Sbjct: 88  RMKTKVIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFI 143

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +    
Sbjct: 144 SLELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDFYF 199

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD   E    ++  +  K I S  K K AD  +   K C  +  + + +   S++ 
Sbjct: 200 IENIDDVEIE---KRAKQVKAKRI-SVSKFKKADIFVENDKICHGKDSI-IDVDKLSLK- 253

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L  +    IL  D +   + L +  P E R + +    N G    I+
Sbjct: 254 -----GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF---FNYGKLKFIN 305

Query: 344 ESYNANPASMKAAIS 358
           +S   N  S K AI 
Sbjct: 306 DSKATNVDSTKFAIE 320


>gi|167920622|ref|ZP_02507713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei BCC215]
          Length = 166

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 8/84 (9%)

Query: 312 TAIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368
            AIKA L  F P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P   
Sbjct: 4   AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 60

Query: 369 GRRIAVLGDMCEMGELSQSFHIDL 392
             R+ V+G+M E+G+   +FH ++
Sbjct: 61  --RVLVIGEMGEVGDEGPAFHREI 82


>gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
          Length = 483

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 152/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  +
Sbjct: 271 PLSITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGK 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLSFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  DGD
Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGD 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
 gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
          Length = 483

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 22/251 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR + P   F A+ G    G DFI  A+  GA +++ +  + A      +PV 
Sbjct: 21  VRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAGASVILTDEPVEA-----PVPVI 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +    L ++A     R    I+AITG+ GK++T E L    +      AC+G+    
Sbjct: 76  AVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVEFLRQIWAGAGIEAACLGTLGVT 135

Query: 147 IG--VPLTLARMPVDVDF----------GIFELGM--SHLGEIRFLTHLVRPHIAVITTI 192
            G  V +T    P  V            G+  LGM  S  G  +     VR  +   T +
Sbjct: 136 RGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEASSHGLKQHRMDGVRLQVGAFTNL 195

Query: 193 APAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL       +  ++K ++F E L   G   +N D  +   + A +   G++ + + G
Sbjct: 196 TQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDSEWGGKMAASARERGLE-VLTMG 254

Query: 252 KSKNADFQLRK 262
             + +D  +R+
Sbjct: 255 -WRGSDLAIRE 264


>gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 472

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 45/381 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+    ++LG L        +R+    IAI+G+ GKTTT  MLT  L +        G 
Sbjct: 107 LPMLSRAELLGEL--------MRNYKEAIAISGTHGKTTTTSMLTDILLA--------GD 150

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200
            +  I V   L  +  ++  G  +L ++   E    FL+    P + VI  +   HL  F
Sbjct: 151 LDPTISVGGILKDIGGNIRVGGPDLFVTEACEYTNSFLSFY--PTMEVILNVEEDHLDFF 208

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             IE+I  +     E L   G + +N   S  E ++  +  L  + + +FGK  ++ +  
Sbjct: 209 KDIEDIRHSFRLFAEKLPAKGLLVVN---SGIEKVEEITRGLRCRVV-TFGKDLSSTYTA 264

Query: 261 RK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           R   +   +  S+ ++ +QG+++  +  G+ G H   N L  + I   L    D  +  L
Sbjct: 265 RNITYDGFARPSY-DLVVQGETVTRITLGVTGEHNVYNSLAAIAIALELGVGFDAIMSGL 323

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGE 368
             F    G  +R+         T+ID+ Y  +P  +KA ++               PH  
Sbjct: 324 GRF---TGTDRRFEKKGEVAGVTVIDD-YAHHPQEIKATLAAARNYPHRKLWCVFQPHTY 379

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            R  A L    E   LS +  + LA++ +      + +S   V    + L      HY  
Sbjct: 380 TRTRAFLDQFAEA--LSAADEVVLADIYAARETDTLGVSSRDVADRIEKL--GTKAHYIP 435

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           + D +  FI  + ++GD+++ 
Sbjct: 436 SFDEIETFILENCMNGDLLIT 456


>gi|304440543|ref|ZP_07400430.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371021|gb|EFM24640.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 462

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 153/383 (39%), Gaps = 41/383 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPV 158
           + A +++    +AI+G+ GKT+T  M++  + ++ ++    +G           L  +  
Sbjct: 104 LGALMKNYKISMAISGTHGKTSTTSMVSEIIRNLPERPTILLGG---------KLDDING 154

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +V  G  E+ ++   E +       P  AVI  I   HL  F  +E I +      + L+
Sbjct: 155 NVLVGNREIMLTEACEYKANVLKYFPTTAVILNIDEDHLDYFDNMEHIVNTFKGYADNLK 214

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              T+ LN DD +   L+ + +     T+ +FG   +AD+  +  K C E  + E  L  
Sbjct: 215 PGSTLILNIDDPYVRELQNRDNT----TVVTFGVENDADYTAKNIKFC-EDGYPEYDLYY 269

Query: 279 KSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           K     +V+   +G H  +N L  +            AI  +   H  +G  +R      
Sbjct: 270 KGSLIGKVILSVLGIHNIKNSLAAIACAHENNISFKDAIDGI---HSYKGVHRRLEFKGM 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQ 386
            G   + D+ Y  +P  + A++  + +           PH   R   +L         S+
Sbjct: 327 FGGAKVFDD-YAHHPTEILASLHAIKRGCERNLYCIFQPHTFTRTKILL------DSFSK 379

Query: 387 SF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444
           SF   D   +  +Y          H   L DA+ ++     Y ET   +  F++ +L  G
Sbjct: 380 SFSEADYTIITDIYAAREKDYGDIHSKTLVDAINQNKDKALYIETFRDIVKFLKDNLRPG 439

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
           D VV   +     Y++  +LLEE
Sbjct: 440 DTVVTMGAGDV--YKIGEMLLEE 460


>gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxidans DMS010]
 gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxydans DMS010]
          Length = 413

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---LTLARMPVDVDF 162
           ++A I+AITGS GK+T   +L +      KT    G    ++G P   L     P   DF
Sbjct: 72  AEAPIVAITGSNGKSTVTTLLALMAQLSGKTVKAGG----NLGTPALDLLEGETP---DF 124

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L  +R L        AV+  ++P H+  +  + +   AK +IF G    G 
Sbjct: 125 YILELSSFQLETVRSLNAFA----AVVLNVSPDHMDRYDSVSDYQQAKQKIFNG---DGV 177

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKW 263
           + LN +D F + ++ +      +    FG  KS+  DF L ++
Sbjct: 178 MVLNTEDPFVQEMRIEG-----RNHIGFGLHKSEGVDFGLLQY 215


>gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
          Length = 444

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 147/333 (44%), Gaps = 46/333 (13%)

Query: 56  FILHAVQ--KGAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +  KGA LVV +T    D V    +  L+IPV         L++  + +RL + 
Sbjct: 37  FIGHEAEHVKGADLVVYSTALSKDNVERKAAEELNIPV---------LHRAQMLSRLMNA 87

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              +A+ G+ GKTTT  M+ + + + K   TY  IG    ++G      +       G +
Sbjct: 88  GKGVAVAGAHGKTTTSSMIALVMETCKIDPTY-IIGGEIVNVGTNAKAGK-------GEY 139

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL +   P IA++T I P HL N+ G   ++  A  +    ++  G   
Sbjct: 140 VVAEADESDGSFLQY--HPTIAIVTNIEPDHLENYEGDFNKLKEAYVQFLHQVKPDGKAI 197

Query: 225 LNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD+  +  L   +  AL    I ++G  + A+++    +    +    +   G+++ 
Sbjct: 198 VCIDDTNLQEMLPSLRGGALRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDGETLG 257

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            V   + G H   N + T  I++ L A +  ++  +A+ +F    G  +R+     +   
Sbjct: 258 NVELSVPGRHNVYNAMAT--IITCLEAGLSFESVAEAIRLFR---GAKRRFHVLGEKNDI 312

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +ID+ Y  +P  ++A IS     +    G+RI
Sbjct: 313 LVIDD-YAHHPTEIQATIS-----AAKATGKRI 339


>gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 154/365 (42%), Gaps = 47/365 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPV---D 159
           +R+  T IA+ G+ GKTTT  M++ I L S       +G      G+      +PV   +
Sbjct: 107 MRNYDTPIAVAGTHGKTTTTSMISHILLESDCDPTISVG------GI------LPVIGGN 154

Query: 160 VDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           +  G  E  ++   E    FL+    P I++I  I   HL  F  IE+I  +     E L
Sbjct: 155 IRVGNSETFVTEACEYTNSFLSFF--PKISLILNIDADHLDFFKDIEDIRHSFRLFAEKL 212

Query: 218 EKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              GT+ +N D D + E+++          I ++G + NAD+  +   Q +E  +     
Sbjct: 213 PADGTLIINSDTDKYTEIIRDLPCE-----IITYGLNSNADYTAQNI-QYNEYGYATFDC 266

Query: 277 QGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               + +  + +   G H   N L TL +   L  + +     L  F   +G  +R++  
Sbjct: 267 VKDGVNLGTYSLSVPGIHNVSNALATLVLGFKLGLNSEALKTGLKHF---QGTDRRFQYK 323

Query: 334 LNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGEL 384
              G  T+ID+ Y  +P  +KA +         S+     PH   R  A+L +      L
Sbjct: 324 GKVGEVTVIDD-YAHHPTEIKATLTAAKNYPHKSLWCVFQPHTYTRTKALLPEFARA--L 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           + + H+ LA++ +     ++ +S   +   K  L      HY  T D +  ++  + + G
Sbjct: 381 TFADHVVLADIYAARETDNLGISSRDL--QKQILELGTDCHYFSTFDEIENYLLENCIPG 438

Query: 445 DVVVV 449
           D+++ 
Sbjct: 439 DLLIT 443


>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Bacillus sp. m3-13]
          Length = 496

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 27/275 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR +     F  IKG   DGH +I  A++KGA ++VV  DM   +    I   
Sbjct: 23  VSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVVQ-DMPEQLVE-GICYV 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V D   AL +LA A      +K  I+ +TG+ GKTT   ++   +          G+  
Sbjct: 81  HVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEGYKTGLSGTIE 140

Query: 144 ----------NNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL--VRPHIAVIT 190
                      N     LT+ RM  D V+ G+ ++ M        L  L  V     V T
Sbjct: 141 IDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLAGVEFQNGVFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS----FFELLKAKSHAL 242
            +   HL     +E   +AK  +F    + + K     LN DD+    + ++  A+    
Sbjct: 201 NLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYVQMTGARIITY 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           GIK    F K++   F   K     E ++ E +L+
Sbjct: 261 GIKNEADF-KAREIQFFENKTSFVLETNFGEFELE 294


>gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 508

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 134/367 (36%), Gaps = 42/367 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+  DSR + P   F  ++G   DGH  +  A   GA  ++V+  +  S+  L +P  
Sbjct: 34  VRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMALLVDRPVETSLPQLCVP-- 91

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   LG L  L      R+   ++ +TGS GKTTT  ++   L +       +G+    
Sbjct: 92  SVRAQLGPLGALLAGDPARALG-LVGVTGSNGKTTTSALVRGVLEAAGTCTGVVGTLGAQ 150

Query: 147 IG-----VPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +        LT    P                  V+     L M  +  + F        
Sbjct: 151 VAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIALDMGRMDGLAF-------E 203

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T     HL +   +E+  ++KA +FE   +T    +  DD +   L  ++      
Sbjct: 204 VAVFTGFEEDHLDHHGTVEQYWASKARLFE-PGRTAAGVVVTDDPWGRRLADQAAV---- 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G   +AD ++  W+  +  + + +        V    +G     N+        +
Sbjct: 259 RVTRVGSGADADVRVLGWRTGAAGTEVLLGDDAGGHRVRSPLVGRVHVTNLAAAWATGRV 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    D     L+   P  GR       L      ++   Y   P ++ AA+  +  ++ 
Sbjct: 319 LGVPPDRIAAGLAAVAPPRGR----NTVLGGSGRPVVVVDYAHTPRALAAAVDTVRDLT- 373

Query: 366 HGEGRRI 372
            G G R+
Sbjct: 374 -GPGGRV 379


>gi|167817533|ref|ZP_02449213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 91]
          Length = 162

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 8/83 (9%)

Query: 313 AIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEG 369
           AIKA L  F P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P    
Sbjct: 1   AIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP---- 56

Query: 370 RRIAVLGDMCEMGELSQSFHIDL 392
            R+ V+G+M E+G+   +FH ++
Sbjct: 57  -RVLVIGEMGEVGDEGPAFHREI 78


>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
 gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
          Length = 446

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 37/277 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A IIAITGS  K+T    +T  +  + K      +   ++G P  L  +  D+D  + 
Sbjct: 108 ANAPIIAITGSNAKST----VTTLVGEMAKQCGLKAAVGGNLGTP-ALELLNSDIDVYVM 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+P HL  +   E     K +IF G EK     +
Sbjct: 163 ELSSFQLEA----TEHLNAKVATVLNISPDHLDRYDSYEGYYQTKYKIFNGCEKA---VI 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD+      A+   L       F    K ADF L +    + Q W ++ ++G ++  V
Sbjct: 216 NLDDNL-----AQPKTLNCPEQIGFSIDGKGADFVLDR----TAQPW-QLIVEGDALLSV 265

Query: 285 HHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +      D+D  +KAL  F      G  +RC     +   +
Sbjct: 266 DQLKIKGLHNYSNALAALALGHGFGLDMDGMLKALKSFP-----GLDHRCQ----WIKQV 316

Query: 343 DES--YNANPAS-MKAAISVLSQISPHGEGRRIAVLG 376
           DE   YN +  + + A  + L  + P    R + +LG
Sbjct: 317 DEVDFYNDSKGTNVGATEAALKGLGPEYAKRIVLMLG 353


>gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
 gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
          Length = 450

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 31/199 (15%)

Query: 42  AFFAIKGPHYD--GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--- 96
           A  A  G  +D  GHD  L A   GA L+ ++  +      L++P      V GAL    
Sbjct: 47  AELADHGLRFDCGGHDAALLA---GADLIAISPGI-----PLTVPA-----VAGALQAGV 93

Query: 97  ----KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
               ++ +AAR  S A ++AITG+ GK+TT    T  +  I + +        ++G PL 
Sbjct: 94  PVQGEIEIAARELS-APMVAITGTNGKSTT----TCLMGEIMRCWGRRAFVGGNLGTPLI 148

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            A    D D+ + E+    L  I       RP   ++  +   HL  ++G+ E  +AK  
Sbjct: 149 EATRSTDWDWIVAEISSFQLEAI----DTFRPRYGMLLNLTADHLDRYAGMGEYVAAKLR 204

Query: 213 IFEGLEKTGTIFLNYDDSF 231
           +FE +       +N DD+ 
Sbjct: 205 LFENMTAEDVAVVNADDAL 223


>gi|332522873|ref|ZP_08399125.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314137|gb|EGJ27122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 452

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L S+A IIAITGS GKTTT  M+   L+   ++    G    +IG P +   +  +  
Sbjct: 106 AYLVSEAPIIAITGSNGKTTTTTMIADVLNHGGQSALLAG----NIGYPASEVALKAEAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IA+IT + P HL     +EE  +AK  I + + + 
Sbjct: 162 DRLVMELSSFQLMGVKAF----HPQIALITNLMPTHLDYHGSLEEYVAAKWNIQQRMTEE 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN D      L +K+ A
Sbjct: 218 DYVILNADQELTSTLASKTKA 238


>gi|283954368|ref|ZP_06371889.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794167|gb|EFC32915.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 475

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           K    A+L++     II IT S GKT+ K  L   L    K+Y    S N  +G+   + 
Sbjct: 142 KKQAKAKLKTNQNLKIILITASFGKTSIKNFLYELLKDNFKSYKTPRSVNTLLGIVADIN 201

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  D    I E G    G+I  +T  + PHI+++  I  AHL  F  +E I S K E
Sbjct: 202 VNLTPDTQIYIAEAGARLKGDIDEITRFLEPHISIVGEIGNAHLEYFKSVENICSTKLE 260


>gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D]
 gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D]
          Length = 483

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 152/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  +
Sbjct: 271 PLSITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGK 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLSFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  DGD
Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGD 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           mutans UA159]
 gi|30316024|sp|Q8DVE3|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
           UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Streptococcus mutans UA159]
          Length = 451

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DV 160
           A L S+A II ITGS GKTTT  M+   L+   ++    G    +IG P +    PV + 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSG----NIGFPASEVAQPVTEK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PH+AVIT + P H+      E    AK  I + + K 
Sbjct: 162 DILVMELSSFQL----MGTESFHPHMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTKE 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  ++ A
Sbjct: 218 DFLVLNFNQDLAKDLANQTQA 238


>gi|269213849|ref|ZP_05982991.2| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
 gi|269145192|gb|EEZ71610.1| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
          Length = 469

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 145/361 (40%), Gaps = 44/361 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIESAGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVV 447

Query: 448 V 448
           +
Sbjct: 448 L 448


>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
 gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
          Length = 496

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 163/401 (40%), Gaps = 53/401 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D++  I+G ++   P+   +  ++IDSR+      F  + G H DGH +I  A   G
Sbjct: 4   TLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTT 121
           A  V+V  D+    G + I V    + +  L        A ++R    +I ITG+ GKTT
Sbjct: 64  AEAVLVEKDVPPVPGLVMIRVKSTQETMTELAPWFYDYPAQKMR----MIGITGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP-VDVDFGIF 165
           T  +L   L++       IG+ N  IG               +  TL RM     D+ + 
Sbjct: 120 TTNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVM 179

Query: 166 E-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EG 216
           E     L ++ +  I + T       A +T I   HL     +E    AKA +F    EG
Sbjct: 180 EVSSHALALNRVAGIEYDT-------AALTNITQDHLDFHKTMENYREAKALLFTHLHEG 232

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +K  T   N DD+   L+  +     +KT + ++GK++  D    ++   ++   + + 
Sbjct: 233 RKKGKTAIFNMDDASSPLIMNR-----VKTKVMTYGKARTNDVYPIRFHVGAKHMELSLH 287

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +M++  H  G     N++  +          D  ++ L  F    GR +       
Sbjct: 288 TPEGNMDLRLHITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDAG-- 345

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Q F  ++D  Y   P  +   +    QI+   +GR  AV G
Sbjct: 346 QPFTVIVD--YAHTPDGLDNVLRTARQIT---KGRLWAVFG 381


>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
 gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
          Length = 445

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 263 WKQCSEQ------SWMEVQLQG 278
              C +Q      +  ++ LQG
Sbjct: 252 ETGCLKQGDEDLIATQDIPLQG 273


>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17545]
          Length = 450

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|313682069|ref|YP_004059807.1| mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154929|gb|ADR33607.1| Mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 480

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167
           TI+ +TGS GKT+ K  +   L      YA   S N   G+   +   +P +    I E 
Sbjct: 160 TIVCVTGSYGKTSMKNFIAQVLGQKFNVYATPRSVNTLGGIIRDVNESLPENTQVYICEA 219

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           G   +G+I  +  L+ P I V+  + P HL  F  +E I   K EI
Sbjct: 220 GAREVGDIYAIAQLLHPQIVVVGKVGPQHLEYFKTLERIQRTKLEI 265


>gi|237807301|ref|YP_002891741.1| UDP-N-acetylmuramate--L-alanine ligase [Tolumonas auensis DSM 9187]
 gi|259509784|sp|C4LA26|MURC_TOLAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237499562|gb|ACQ92155.1| UDP-N-acetylmuramate/alanine ligase [Tolumonas auensis DSM 9187]
          Length = 484

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 177/418 (42%), Gaps = 56/418 (13%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T +      V +   L IPV    ++L  L       R R     IAI G+ 
Sbjct: 78  GASVVVVSTAIHGDNPEVMAARELRIPVVRRAEMLAEL------MRYRHG---IAIAGTH 128

Query: 118 GKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++    A +    T+  IG   N  G   T AR+        + +  +   + 
Sbjct: 129 GKTTTTSLIASVYAQAGADPTF-VIGGLLNSAG---TNARLGTSR----YLIAEADESDA 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            FL HL +P +A++T I   H+  + G   ++ +   E    L   G   +  DD     
Sbjct: 181 SFL-HL-QPMVAIVTNIEADHMDTYGGDFTKLRATFLEFLHNLPFYGLAVVCIDDPVIRE 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293
           L  +   +G  TI ++G S++AD Q++++ Q   QS   ++LQ  S   +   + G H A
Sbjct: 239 LLPE---IGRATI-TYGYSEDADVQVQEFVQEGSQSQFRLRLQDGSFLPLRLNLPGRHNA 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNAN 349
            N   T+ +        D  + AL+ F    G G+R++         G   L+D+ Y  +
Sbjct: 295 LNAAATVAVALEDHIPTDAIVDALAQF---AGVGRRFQQYGEFDTGAGKVLLVDD-YGHH 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  ++A ++      P    RR+ VL         ++  + D AEVL+  ++     V+ 
Sbjct: 351 PTEVRATLAATRAAWPE---RRL-VLVFQPHRYTRTRDLYDDFAEVLAKVDVLIMLDVYA 406

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNSCG 456
           +G   +   D       +    T+D +F+         +   L DGDVV+ + + + G
Sbjct: 407 AGEDPIPGADGRSLCRSIRQRGTLDPIFVATPAEVPGVLADVLKDGDVVLTQGAGNVG 464


>gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 512

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 150/376 (39%), Gaps = 39/376 (10%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V G++ DSR + P  AF A+ G   DG +F+  A+++GA LVV   ++  +      P
Sbjct: 42  GRVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVPEA------P 95

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--- 139
           V  V D   AL  LA A       +  +  +TG+ GKTTT   L   L+       C   
Sbjct: 96  VAVVPDARAALAALACAFHGHPSRRMEVYGVTGTNGKTTTCYALHAVLAGAFGEERCGLM 155

Query: 140 -----IGSYNNHIGVPLTLARMPVDVDF-GIFELGM--------SHLGEIRFLTHLVRPH 185
                +        V  T     V     G+ E G+        SH   +R +   +R  
Sbjct: 156 TTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEG-IRFA 214

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV T ++  HL     +EE    K  +F  L   G    N DD++   L  +     ++
Sbjct: 215 GAVFTNLSRDHLDLHGTMEEYYRTKRRLF--LWARGPKLSNADDAWGRRLAGE-----VE 267

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG +  AD+++   +     +   ++   +++ +     G +  QN      +   
Sbjct: 268 GVRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIEVPLFGDYNVQNAAGAAALALE 327

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  +AL       GR +R       GF  ++D  Y      ++A + V  +++ 
Sbjct: 328 LGVPGETVARALRGMPQVPGRFERV---GGPGFEVIVD--YAHTDVGLEAVLRVAREVAR 382

Query: 366 HGE-GRRIAVLGDMCE 380
            G  GR I V G   E
Sbjct: 383 RGRPGRVICVFGAAGE 398


>gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
 gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
          Length = 459

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 160/382 (41%), Gaps = 47/382 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141
           IP+    ++LG +        +++    IAI G+ GKTTT  M+T I + +       +G
Sbjct: 94  IPMMSRAELLGQM--------MKNYREAIAIAGTHGKTTTTSMVTEIFMEADNNPTISVG 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199
              N IG          ++  G  E  ++   E    FL+    P +AVI  I   HL  
Sbjct: 146 GILNSIGG---------NIRVGGPEFFVTEACEYTNSFLSFY--PTMAVILNIEEDHLDF 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F  I++I  +  +  E + + GTI +N     +  L A +       + +FG SK  D+ 
Sbjct: 195 FKDIDDIRRSFRQFIEKVPENGTIIMNGTIENWRELTAGAAG----KVVTFGNSKENDYS 250

Query: 260 LRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKA 316
                + + +  S+ ++ ++G+  E +  G+ G H   N L  + +     A ++ A + 
Sbjct: 251 FDAVVYDEYARPSF-DLYIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRG 309

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAIS-----VLSQISPHG 367
           L  F    G  +R+         T+ID+ Y  +P    A++KAA +     +     PH 
Sbjct: 310 LLKF---TGTNRRFEKKGELKGITIIDD-YAHHPQEIEATLKAAENYPHKRICCAFQPHT 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             R  A + +  +   LS +  + L ++        + +S   ++AL     + +   Y 
Sbjct: 366 YTRTKAFMKEFAQA--LSLADCVMLTDIYPARETDTLGVSSADIVAL--LKEKGVDAWYL 421

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            T D +  FI  +   GD+++ 
Sbjct: 422 PTFDDMEKFILENCTQGDLLIT 443


>gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 506

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 22/227 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF+  A   GA  V+ +        +  +PV 
Sbjct: 35  VTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAAAVLTDPTGAERAAASGLPVL 94

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD    + +LA          +  I ITG+ GKTTT  ++   L +++ T   IG+  
Sbjct: 95  VVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLKTVRST-GLIGTVE 153

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             I V 
Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDIGVF 212

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELL 235
           T ++P H+   SG+E+   AKA++F    K G +  +N DD +   L
Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLF--TPKRGKLGVVNVDDEYGRRL 257


>gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 488

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 147/372 (39%), Gaps = 36/372 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 18  LIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAVAYEVEGSNVLPLTDVPL 77

Query: 86  FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R       +  ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 78  IPVKGLAAQLSD--IAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 136 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 192

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T ++  HL     +E   +AKA++F          +N DD F   +        +
Sbjct: 193 DVAVLTNLSRDHLDYHGTMEAYGAAKAKLF-AWPNLNCRVINLDDDFGRQMAGLKQESRL 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T      S     +  K+     ++ + V  QG+   +    +G     N+L  +G + 
Sbjct: 252 ITYSQLDSSAYLYCREAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R    L      L+   Y   P +++    VL  + 
Sbjct: 310 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 362

Query: 365 PHGEGRRIAVLG 376
           PH +GR + + G
Sbjct: 363 PHAKGRLLCLFG 374


>gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens
           200]
          Length = 500

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 29/234 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---P 84
           N +++DSR+I   + F A+ G   DG  FI  A+  GA  V+V+TD     G + +    
Sbjct: 21  NELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLLGDNA 80

Query: 85  VFGVDDVLGALNKL--AVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSI 133
             GV      LN+   A+AA+    A          II ITG+ GKT+T +++   ++S+
Sbjct: 81  ERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQLVTSL 140

Query: 134 KKTYACIGSYNNHIGVPL-----------TLARMPVDVD---FGIFELGMSHLGEIRFLT 179
            +  A +G+  N +   L           TL R   + +     +  + +S  G ++   
Sbjct: 141 GRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLVQGRV 200

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             V   +AV T +   HL     +E   +AK  +F      G   LN DD   E
Sbjct: 201 DAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR-FSTLGHGLLNLDDPVGE 253


>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
 gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
          Length = 450

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307


>gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 493

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 49/385 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT  ++T  +A + +  T+  IG      G    L R
Sbjct: 98  LAELLRLRQG---IAIAGTHGKTTTTSLITSVLAEAGMDPTF-VIGGRLEAAGSHAKLGR 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL HL +P +AV+T I   H+  +     ++  A  +  
Sbjct: 154 -------GEFIVVEADESDASFL-HL-QPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFV 204

Query: 215 EGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---- 269
           + L   G   L  DD+   E++ A +     K + ++G S+ A  +    +    Q    
Sbjct: 205 QHLPFYGMAVLCVDDAHVLEIMPAIT-----KPVTTYGLSETAQVRAADIRHSEGQMHFT 259

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + + V  + + +++V +  G H  QN L  + + + +     + ++AL+ F   + R +R
Sbjct: 260 ALIGVNGKTRKLKIVLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQR 319

Query: 330 Y-RCAL------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           Y    L        G FTLID+ Y  +P  M A I+      P   GRR+ VL       
Sbjct: 320 YGEIPLTDPETGRNGSFTLIDD-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRY 374

Query: 383 ELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMD 431
             ++    D  +VLS  ++   + V+ +G   +   D  +L RS+ V       + E +D
Sbjct: 375 TRTRDLFEDFVKVLSTADVLLLTEVYSAGEAPIIAADSKSLARSLRVLGKVEPIFVERVD 434

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456
            L   I S   D DVV+V  + S G
Sbjct: 435 ELEEAIHSIARDKDVVLVMGAGSVG 459


>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 513

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 42/374 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR + P   F  I G   DGH F   AV+ GA  ++    +      +SIPV 
Sbjct: 23  ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+  
Sbjct: 78  YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG          P  LTL     D     V   + E+    L + R   +     +AV
Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHAL 242
              ++  HL     +EE A+AK+ +F  L             LN DD     ++  + A 
Sbjct: 196 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG  + ADF+    +  S  S  +++    +  +    IG     N+L  +  
Sbjct: 255 ---HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++ AIK +      +GR +       Q F  ++D  Y   P  +   ++VL  
Sbjct: 312 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 364

Query: 363 ISPHGEGRRIAVLG 376
           I+   E R   V+G
Sbjct: 365 IAEFAEKRVFVVVG 378


>gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 492

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 156/375 (41%), Gaps = 39/375 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G++ +S+S++P   F A KG  +DG+ +I  A+Q GA  ++  TD+        + +
Sbjct: 22  LLTGLTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSGACAIL--TDLFDPCLKKVVQI 79

Query: 86  FGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              + + + ++           +  ++ ITG+ GKTT   ++   L         IG+  
Sbjct: 80  IHPNPNEIESILARDYYQNSSEELFMVGITGTNGKTTISFIIKYLLDLFHGPCGLIGTIE 139

Query: 145 NHIGVPLTLA-RMPVDVDFG---IFELGMSHLGE----------IRFLTHLVRPHIAVIT 190
             +G     A R   DV      ++E+ +S              I+     +   +AV +
Sbjct: 140 YIVGSHRYQATRTTPDVIENHKMLYEMSLSGTKSAVMEVTSHALIQKRVEYIDFDVAVFS 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-------IFLNYDDSFFELL--KAKSHA 241
            +   HL     +E   +AK  +FEGL +  T         +N DD + E +    ++H 
Sbjct: 200 NLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRNEKWAIVNIDDPWCEQIVKGCQAHR 259

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L      ++G  K AD Q    K  S+ + + +  QG+++E     +G     N L  +G
Sbjct: 260 L------TYGIDKPADLQASHIKLSSQGTSINLTYQGQTIECFWPLLGRFNIYNCLAAIG 313

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++      +   ++ ++     +GR ++    L    +  ID ++  +  S     +VL 
Sbjct: 314 VLLTQNIPLKEIVEKMACIPNVKGRLEKVLNNLELDIY--IDFAHTDDALS-----NVLK 366

Query: 362 QISPHGEGRRIAVLG 376
            +S   +GR + + G
Sbjct: 367 TLSEIKKGRLLTIFG 381


>gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 495

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 148/382 (38%), Gaps = 53/382 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S+DSR++ P   F A+ G    G +FI +A++  A  ++ + +             
Sbjct: 24  ITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTDREGAR---------I 74

Query: 87  GVDDVLGALNKLAVAARLR-------------SKATIIAITGSVGKTT----TKEMLT-- 127
             D++  +   L V    R                 ++A+TG+ GKT+    T+++ T  
Sbjct: 75  AADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTRQIWTEL 134

Query: 128 ------IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRF 177
                 I  + ++  +A    +      P+TL R+  ++   G+    M   SH  + R 
Sbjct: 135 GLMAANIGTTGVEGAFAAPSPHTTP--EPITLHRLLAEMSQAGVTHAAMEASSHGLDQRR 192

Query: 178 LTHLVRPHIAV--ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFEL 234
           L  +   H+A    T     HL   +  ++   AKA +F   L   G   LN DD     
Sbjct: 193 LEGV---HLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGRE 249

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+  +   G + I S G++++   QL   +       +     G+   V    IG   A+
Sbjct: 250 LEEIAQERGQEVI-SIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAE 308

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+  G+     +D D             GR  +     + G    +D  Y   P ++ 
Sbjct: 309 NVLVAAGLAIASGSDPDEVFATFPALTTVRGR-MQLAAKRDNGAAIFVD--YAHTPDALA 365

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
            A+  L    PH  G+ + V G
Sbjct: 366 TALEAL---RPHVMGKLVVVFG 384


>gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200]
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D     +  +   +G + + ++G S +AD Q   + Q   Q    V+ +GK  ++++ + 
Sbjct: 234 DPVVREIMPR---IG-RHLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343
            G H   N L  + + +    D    I+AL+ F   +G G+R+    + A  +G   L+D
Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSALIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y+     ++G    A   AL RSI +       +  + D L   +   L +GD++
Sbjct: 401 LLLDVYSAGEAPITG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 LTQGAGNIG 465


>gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
 gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D     +  +   +G + + ++G S +AD Q   + Q   Q    V+ +GK  ++++ + 
Sbjct: 234 DPVVREIMPR---IG-RHLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343
            G H   N L  + + +    D    I+AL+ F   +G G+R+    + A  +G   L+D
Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSALIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y+     ++G    A   AL RSI +       +  + D L   +   L +GD++
Sbjct: 401 LLLDVYSAGEAPITG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 LTQGAGNIG 465


>gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 153/374 (40%), Gaps = 45/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G ++DSR +A    F A  G   +G DFI  A+  GA  +V   +         + + 
Sbjct: 26  VLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 76

Query: 87  GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G   ++    +LA   +AAR  +     + A+TG+ GKT+  E+     +      A IG
Sbjct: 77  GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIG 136

Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                    SY+  +  P           LAR   D+   IFE     L + R  +   +
Sbjct: 137 TLGVITAKNSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                 T+ +  HL     +E   +AK  +F E +   GT  +  DD     + A     
Sbjct: 193 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKR 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+K I   G+   A  +L   +  S+   + + ++G+S ++    IG +   N L+  G+
Sbjct: 253 GLKLI-DIGEKAEA-IRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V     D+   + AL++  P  GR +R   + N G    +D  Y   P  ++AAI  L  
Sbjct: 311 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 365

Query: 363 ISPHGEGRRIAVLG 376
             PH EG    V G
Sbjct: 366 -RPHTEGLLWVVFG 378


>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++     AF  IKG   DGH++I  A+Q GA LVVV      S     I   
Sbjct: 24  ITDIAYNSKNAKEGCAFVCIKGFKADGHEYIDEAIQNGACLVVVEEFFDTSKIEGKIDYI 83

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++            +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 84  KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIK 143

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           N IG     A+   P   D           G+  + M   SH  E+ F  +     + V 
Sbjct: 144 NMIGSREIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   +AK ++F G+ K   +  N DD +      K          +
Sbjct: 203 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDRW-----GKRIIEMYPDSVT 254

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  +A    R  K    ++  E+   G+  E+  +  G     N L        L   
Sbjct: 255 YAKDSDAQVCARNIKLFVNKNQFELWYNGEKEEITLNIPGLFSIYNSLAASACCISLGIK 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +DT  K L       GR +      N+ F  +ID  Y   P  +   ++++  +    EG
Sbjct: 315 LDTIKKGLENLKAVPGRFEIVES--NEKFTIVID--YAHTPDGL---LNLMKTVDEVAEG 367

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 368 RKVLLFG 374


>gi|251798403|ref|YP_003013134.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546029|gb|ACT03048.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
          Length = 462

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 150/357 (42%), Gaps = 44/357 (12%)

Query: 29  GISIDSRSIAPQE--AFFAIKGPH-YDGHDFILHAVQKGAGLVVVNT----DMVASIGS- 80
           G  I    +A QE     A KG   Y GH+   H   KGA LVV +T    D V  + + 
Sbjct: 28  GYKITGSDVARQELTEKLAAKGAQIYIGHE-AEHV--KGADLVVYSTALSKDNVERMAAE 84

Query: 81  -LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L+IPV         L++  + ARL +    +A+ G+ GKTTT  M+ + +        C
Sbjct: 85  ELNIPV---------LHRAQMLARLMNAGKGVAVAGAHGKTTTSSMIALVMEK------C 129

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                  IG  +           G + +  +   +  FL +   P IA++T I P HL N
Sbjct: 130 DADPTYIIGGEIVNVGTNAKAGKGEYVVAEADESDGSFLQY--HPSIAIVTNIEPDHLEN 187

Query: 200 FSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + G   ++ +A  +    +++ G   +  DD     L  K  A     + ++G   ++++
Sbjct: 188 YDGDFGKLKAAYVKFLSQVKENGKAIVCADDETITELLPKLDADTASKLITYGIDSDSEY 247

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADV--DTAIK 315
           +         +   E+  +G ++  +   + G H   N + T  +++ L A +  D   K
Sbjct: 248 KAENISLGDRKVSFEMTHRGTTLGTLELSVPGRHNVYNAMAT--VITCLEAGLSFDNIAK 305

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A+  F    G  +R++  L +    L+ + Y  +P  ++A IS     +    G+RI
Sbjct: 306 AIHEFI---GAKRRFQV-LGEVNDILVIDDYAHHPTEIQATIS-----AAKATGKRI 353


>gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 492

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   V  + +DSR + P + F AIKG   DG  FI  A++ GA  V +  D +    + 
Sbjct: 15  APSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGA--VAIIADRLCEFETS 72

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTY 137
             P++ V ++   L +L  A+R   + +    +I +TG+ GK+TT  M+           
Sbjct: 73  FEPLYLVSELTKKLPEL--ASRFYQQPSHMLDLIGVTGTNGKSTTTAMIAHLAQFCNSQS 130

Query: 138 ACIGS--YNNHIGVPLTLARMPVDVDF------------GIFELGMSHLGEIRFLTHLVR 183
           A IG+  Y +   +   +   P  VD              +  + +S  G ++      +
Sbjct: 131 AIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAMEVSSHGLVQQRVAQCQ 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              AV T ++  HL     +     AK  +F+  E    + LN DD
Sbjct: 191 FKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPE-LVVLNQDD 235


>gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
 gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D+    +  +   +G + + ++G S +AD Q   ++Q   Q    V+ +GK  ++++ + 
Sbjct: 234 DAVVREIMPR---IG-RHMITYGFSDDADVQALNFQQQGHQCRFTVRRKGKEDLDLLLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343
            G H   N L  + + +    D    I+AL+ F   +G G+R+    + A  +G   L+D
Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y+     + G    A   AL RSI +       +  + D L   +   L +GD++
Sbjct: 401 LLLEVYSAGEAPIPG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 LTQGAGNIG 465


>gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
 gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA        +  T++ +TG+ GKTT  ++L   +  +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQLLAQWVELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A  +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDASAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella piezotolerans WP3]
 gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans
           WP3]
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 151/363 (41%), Gaps = 47/363 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----- 82
           N +++DSR++   + F A+ G   DG  +I  A+  GA  V+V+TD     G++S     
Sbjct: 20  NDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVLVHTDSPEEHGNISTDDGL 79

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I  F ++  +  L   A A  L SK   II +TG+ GKT+  +++        K  A +
Sbjct: 80  LISFFQLNRQVSVL--AAQAYPLSSKRPKIIGVTGTNGKTSVTQLIAQLQQLQSKQTAVM 137

Query: 141 GSYNNHIGVPL------TLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHI 186
           G+  N +   L      T   + +      FE        + +S  G ++     V   +
Sbjct: 138 GTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVSSHGLVQGRVEAVPFDV 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T ++  HL     +E   +AK  +F          +N DD+      A+  A   KT
Sbjct: 198 AVFTNLSRDHLDYHHTMEAYGAAKQRLFT-FSSLRAGLINCDDAIGASWLAQ--ATSTKT 254

Query: 247 I-YSFGKSKNADFQLRKWKQCSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +S   +  AD      KQC            W E + + +S       +G     N++
Sbjct: 255 LGFSIKGNTKADIYA---KQCLYHDGGVTCTLVWPEGEAKLQSPL-----LGDFNLSNLV 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             LG + ++  D+   ++  S   P  GR +R+  +   G  TL+ + Y   P +++ A+
Sbjct: 307 AALGALYLVGEDMAAIVRLASALTPVAGRMERFTTS---GNVTLVVD-YAHTPDAIEQAL 362

Query: 358 SVL 360
             L
Sbjct: 363 QAL 365


>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 482

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 14/174 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-KLAVAARLRSKATIIAITGSVGKTT 121
           + A +VVV+  +  S  S+   V+    V+G +     + + ++    II ITG+ GK+T
Sbjct: 75  ENADIVVVSPGVPLSTPSIVSAVYKGIPVIGEIELSWQILSLIKENVKIIGITGANGKST 134

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIR 176
           T  +    L    K     G    +IG P     L L    +D+++ + EL    L  I+
Sbjct: 135 TSTLTYEFLKRDGKKVQLAG----NIGYPMAEVVLKLLNKEIDMEYLVLELSSFQLEGIK 190

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                 +P  A I  I P H+  +S ++E   AKA+IF+       + LN DD 
Sbjct: 191 TF----KPDFAAILNITPDHMDRYSDMKEYIEAKAKIFQNQNGDDYLILNMDDE 240


>gi|153951182|ref|YP_001398284.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938628|gb|ABS43369.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 475

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           II IT S GKT+ K  L   L    K+Y    S N  +G+   +   +  D    I E G
Sbjct: 157 IILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDAQIYIAEAG 216

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               G+I  +T  ++PHI+++  I  AHL  F  +E I S K E
Sbjct: 217 ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260


>gi|189347972|ref|YP_001944501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlorobium
           limicola DSM 245]
 gi|226711892|sp|B3EIL0|MURD_CHLL2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189342119|gb|ACD91522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium limicola
           DSM 245]
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVP---LTLAR 155
           AA    KA I  ITG+ GKTTT  +L        +K  Y      N  IGVP   L L  
Sbjct: 98  AASWFCKARIAGITGTDGKTTTSTLLHRIAEADGMKNDYRAFSVGN--IGVPFSSLVLDM 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
            P D+   + EL    L          RP ++VIT I P HL  ++G ++  A+AK  I+
Sbjct: 156 APADL--AVVELSSYQLEG----CETFRPDVSVITNITPDHLDRYNGDMQLYAAAKFRIY 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAK 238
                + T+  N+DD    LL+A+
Sbjct: 210 ASQRASDTLVYNFDDP---LLRAQ 230


>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
 gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
          Length = 491

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 138/356 (38%), Gaps = 42/356 (11%)

Query: 22  VPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
            P G V    ++ D+R + P   FF + G   DGHDF   AV +GA  +VV   +     
Sbjct: 18  TPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPL----- 72

Query: 80  SLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            L +P   V  V  A+ + A        ARL++    + +TG+ GKTTT  ++   L + 
Sbjct: 73  GLGVPELRVASVRAAMARAAANFNGDPTARLQT----VGVTGTNGKTTTAFLVRGLLEAA 128

Query: 134 KKTYACIGSYNNHIG-----VPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-- 185
            +    +G+    +G     V  T A  + +  D      G      I   +H +  H  
Sbjct: 129 GRQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHRA 188

Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                  A+ T +   HL     +E+   AK  +FE     G   +N DD +   L  + 
Sbjct: 189 DAVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFE--TGPGVAVVNVDDPYGRRLAEEL 246

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A G   + +     +AD++  +       S    Q     + +     G    QN+L  
Sbjct: 247 RADG-AALVTIALDHDADYRATELTTGLTGSAFTAQTPQGPIALRTPLPGRFNVQNVLGA 305

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPASM 353
           +  V  L   ++    AL    P+ GR  G+       QGF  L+D  Y   P S+
Sbjct: 306 VAAVRALGVPLEQIAAAL----PQAGRVPGRFEPVDEGQGFAVLVD--YAHTPDSL 355


>gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 511

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 36/282 (12%)

Query: 11  LQAIQGHSI----GIVPQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +++I+ H +    GI+P        +N IS +S+ +     F  + G + DG  F + A+
Sbjct: 1   MRSIKLHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSV 117
           + GA   ++       IGS+    +  +DD L  +    VA    R   K  +I +TG+ 
Sbjct: 61  ENGAEAAIIGPAAKQKIGSIDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVD 161
           GKTT   +L   L  + K  A  G+ +N   G                    A +  + +
Sbjct: 121 GKTTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESE 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---E 218
           F I E+    + + R          AV T +   HL   S +E     K ++F      E
Sbjct: 181 FAILEVSSHSIAQKRISG--CEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNE 238

Query: 219 KTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADF 258
           K G   LN+DD +   L +  +  +  + T  +  + KN DF
Sbjct: 239 KDGISVLNHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDF 280


>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. Y412MC61]
 gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
 gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC61]
 gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
          Length = 489

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 41/360 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR +AP   FF +KG   DGHDF   AV +GA  +V    +     S+ +PV  V 
Sbjct: 26  LEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPL-----SVDVPVVLVS 80

Query: 90  DVLGALNKLAVA--ARLRSKATII------------AITGSVGKTTTKEMLTIALSSIK- 134
           D   A+  LA A   R   +  +I            +I   + +   K+   I    IK 
Sbjct: 81  DSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKV 140

Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             ++Y    +    + +  T  +M VD  V+F   E+    L + R   H     +AV T
Sbjct: 141 GDRSYPAANTTPESLILQRTFKQM-VDEGVEFVAMEVSSHALHQGR--VHGCDYDVAVFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   HL     +EE  +AK  +F  L       +     LN+DD   +  K  + A   
Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I ++G  + +D    + +  +      +     S  V    +G     N+L       
Sbjct: 255 -PIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETKLVGSFNVYNILAAAAACL 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T   AL+   P  GR +       Q F  ++D  Y   P S++ A+  + Q++
Sbjct: 314 ASGFSLETIAAALADVEPVPGRFE--TVDEGQNFTIIVD--YAHTPDSLENALKTVRQLA 369


>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
 gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
          Length = 486

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 170/427 (39%), Gaps = 49/427 (11%)

Query: 7   FHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H LL+ +Q +    G  P+  +  I  D+R + P   F  I+G   DGHDF   A +KG
Sbjct: 3   LHKLLRFLQPYMTFKGENPE--ITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASAAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A  V+   ++      L IPV  V +   A+  LA A   +   +  +I ITG+ GKTTT
Sbjct: 61  AAAVIAQREL-----DLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP-VDVDFGIFE 166
             ++   L+   +    IG+    I                +  T  +M    VD  + E
Sbjct: 116 SHLIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L E R   H    +IAV T +   HL     ++E   AK  +F  L      E+ 
Sbjct: 176 VSSHALDEGRI--HGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD      +  + A     + S+G  + AD +    +  S  +  ++      
Sbjct: 234 KYAILNSDDPASAEYEKSTAA----HVISYGIDQEADLRAINIQMTSGGTEFDLISPFGK 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    IG     N+L ++G        +   IK+        GR +       Q F  
Sbjct: 290 HKVSLKMIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAG--QDFSV 347

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y+  P S+K A+  + Q +     R   ++G  C  G+  +S    +AE+   Y+
Sbjct: 348 IVD--YSHTPDSLKNALETVKQFALK---RIFTIVG--C-GGDRDRSKRPLMAEIACQYS 399

Query: 401 ISHVWLS 407
              ++ S
Sbjct: 400 TDPIFTS 406


>gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
 gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
          Length = 473

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 30/282 (10%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L IPV+    +L AL             T IA+ G+ GKTTT  M    L  +    + +
Sbjct: 97  LGIPVWPRAKMLAALGH---------GCTTIAVAGTHGKTTTASMCATMLDRMGLDPSFL 147

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                 IG  +   +       G + +  +   +  FL   + P + V+T +   HL ++
Sbjct: 148 ------IGGIVEGYKTNGRNGSGTYFVAEADESDSSFL--YLEPRVVVVTNVEADHLDHY 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQ 259
             + EI +  A+    + + G I    DD   +EL ++ S     K I ++G     D  
Sbjct: 200 GSLAEIENTFAQFMSLVGEQGVIVACGDDKQLYELARSTS-----KRIVTYGFDARNDIV 254

Query: 260 LRKW-KQCSEQSWMEVQL-QGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 +C++ S   ++   G+  EV + H  G H   N    +G+   L  D   A +A
Sbjct: 255 CEVCDDRCAQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARA 314

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           LS F   EG  +R+    +    T++D+ Y  +P  +KA ++
Sbjct: 315 LSTF---EGVRRRFTRVGDVCGVTVVDD-YGHHPTEIKATLA 352


>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 484

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 157/380 (41%), Gaps = 43/380 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           V  G +N I IDSR +   + F A+ G   DG  FI  A+++GA  VV     V  + + 
Sbjct: 14  VRAGLLN-IRIDSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVCRPCSV-PVQTG 71

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              V   +D   AL  LA AAR  +  T   ++ ITG+ GKTT   +L     +      
Sbjct: 72  GAAVVVAEDPRKALGLLA-AARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTG 130

Query: 139 CIGSYN-----NHIGVPLT------LARMPVD-----VDFGIFELGMSHLGEIRFLTHLV 182
            +G+ N     +    P+T      L  M  D     V+    E+    L + R      
Sbjct: 131 LLGTVNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSG--A 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R   A++T +   HL     +E   SAK+ +F E  ++     +N DD +   L  +   
Sbjct: 189 RFAAALLTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQ--- 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNM-- 296
           LG    YS   +   D Q+ +    S       + +  +GK+ E+    +G   A N+  
Sbjct: 246 LGRGVGYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAG 305

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +   G+   L  +   A++ L+ F    GR +R     ++G    +D  Y   P +++  
Sbjct: 306 VQAAGLAMGLPVE---AMQGLASFSGVPGRMERIEN--DKGLNVFVD--YAHTPDALE-- 356

Query: 357 ISVLSQISPHGEGRRIAVLG 376
            +VL  +   G  R IAV G
Sbjct: 357 -NVLRALRAAGFARVIAVFG 375


>gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
 gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
          Length = 515

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 46/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V G+++DSR++ P + + A+ G    G DF       GA  V+ + D V  +    + +P
Sbjct: 36  VTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADAGAAAVLTDADGVERLRAAGVDLP 95

Query: 85  VFGVD---DVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           V  V+    VLG      +AAR+        T++ ITG+ GKTTT  ++  AL ++ +  
Sbjct: 96  VIVVEAPRSVLG-----TIAARIYGTTDLSLTMVGITGTNGKTTTAYLVASALDALGQRT 150

Query: 138 ACIGSYNNHIG---------VPLT------LARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    IG          P +      LA M   D D  + E+    L + R    L
Sbjct: 151 GLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTCVMEVSSHALSQHRVDGVL 210

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +++ T ++  HL   + +E+  SAKA++F   E++    +  DD +   L A+   
Sbjct: 211 Y--DLSLFTNLSQDHLDFHADMEDYFSAKAQLFT-PERSTRGLICVDDIWGRRL-AEECG 266

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           + + T+ +  + + AD+ +      +E +   ++  G  +++     G     N  M   
Sbjct: 267 IPVTTLTTI-EGQTADWVV--TVDATEPARFALRGTGIELDLRSALPGDFNVANTAMAAV 323

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKR----YRCALNQGFFTLIDESYNANPASMKAAI 357
            + +L  D +   +A+       GR ++        ++ G   ++D  Y   P +++AA+
Sbjct: 324 ALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVVD--YAHTPDAVEAAL 381

Query: 358 SVLSQISPHGEGRRIAVLG 376
           + L    P   GR + VLG
Sbjct: 382 AAL---RPTTTGRLVVVLG 397


>gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
 gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
          Length = 494

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+  + 
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTP 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++S+G  + A F  +  ++          LQG S + V     Y +    +   
Sbjct: 254 Y----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300

Query: 301 GIVSILT---------ADVDTAIKALSVFHPKEGR 326
            I +I+            ++  IKA+    P EGR
Sbjct: 301 NISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEGR 335


>gi|167586016|ref|ZP_02378404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 175

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)

Query: 315 KALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRI 372
           + L  F P +GR + R   A +    T++D++YNANP SM+AAI VL +Q +P     R+
Sbjct: 17  QGLEAFEPVKGRLQVRQAIAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RV 71

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            V+GDM E+G+   +FH ++        I  ++       AL DA  R     Y +T
Sbjct: 72  LVIGDMGEVGDEGPAFHREVGAYARERGIDALF-------ALGDA-SRDACASYGDT 120


>gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 27/233 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 18  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  + G L+  A+A R     +    ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 78  IPVKGLAGQLS--AIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L        R +   V  H            
Sbjct: 136 TLGTGFYGSLQSGRHTTPDPIAVQATLTDL---RKAGARAVAMEVSSHGLDQGRATALAF 192

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            +AV+T ++  HL     +E  A+AKA++F   +    + +N DD F   L A
Sbjct: 193 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRV-INLDDDFGRELAA 244


>gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
 gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
          Length = 484

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 34/271 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           F  L + I+G +   +P   ++GI+ D+R+ +     F  IKG  +DGHD     + KG 
Sbjct: 6   FMKLYELIKGVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGC 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
            +VV   D+      L   +  V D   A   L  A       +  +I +TG+ GKTT  
Sbjct: 66  AVVVCERDL-----GLERQIV-VSDTRAAFPMLCAAWFGHPERELELIGVTGTNGKTTIT 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHL 181
            ++   LS        IG+  N IG  +          + +FEL   M+  G  ++    
Sbjct: 120 TVIKKVLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAG-CKYTVME 178

Query: 182 VRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           V                + V T +   HL     +E    AK  +F   + + +  +N D
Sbjct: 179 VSSQGLEQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLF---DISDSAIINID 235

Query: 229 DSFFELLKAKSHALGIKTIY-SFGKSKNADF 258
           D +      + +A  I   Y S+  + +ADF
Sbjct: 236 DEY-----GRRYAKEIPCPYKSYSVNGSADF 261


>gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
 gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
          Length = 483

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  Q
Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  D D
Sbjct: 386 GTVDALLLAEVYAAGEPSIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
 gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
          Length = 462

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 135/343 (39%), Gaps = 54/343 (15%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140
           +IP+     +LG +        ++S    I ++G+ GKTTT  M + + +++ K     +
Sbjct: 93  NIPLLTRAQLLGEM--------MKSYKIPICVSGTHGKTTTTSMASHVLMAADKNPTISV 144

Query: 141 GSY------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           G        N HIG          + D  + E        + F      P I++I  I  
Sbjct: 145 GGILPLIKGNYHIG----------NTDTFLMEACEYTNSFLDFF-----PKISIILDIDA 189

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKS 253
            HL  F  +E+I ++  +  E L   GT+ +N DD  F+++   +  L  + I YS    
Sbjct: 190 DHLDFFKDLEDIRNSFRKFAELLPADGTLIINADDPAFKMI---TKDLPCEVITYSLSNI 246

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            N    +  + +    S+  +              G H   N L  + +   L  D DT 
Sbjct: 247 GNYTADMITYDELGHASFRALYKGEPIGNFALQVPGSHNVSNALAVIALAEKLGIDADTI 306

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---------S 364
            K    FH   G  +R+         T+ID+ Y  +P  +KA ++   ++          
Sbjct: 307 QKGFDSFH---GTNRRFEQKGEMNGATVIDD-YAHHPTEIKATLNTARRVPHKTIWCVFQ 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-----LSLYNIS 402
           PH   R  ++L    E   LS + H+ LA++     L +Y IS
Sbjct: 363 PHTYTRTKSLLPQFAEA--LSIADHVVLADIYAARELDIYGIS 403


>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
 gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
          Length = 450

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISDAPIVGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGYPASQVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I+       P IAVIT + P H+      E   +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIQEF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQSNMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---Q 277
             + LN++    + L  K++A    T+  F   +  D            +++E  L   +
Sbjct: 218 DYLVLNFNQELAKELATKTNA----TVVPFSTLEKVD-----------GAYLEDGLLYFR 262

Query: 278 G-KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G K M     G+ G H  +N L T+ +  +   D +   + LS F
Sbjct: 263 GEKVMAADEIGVPGSHNVENALATIAVAKLRGVDNEIIKETLSAF 307


>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
          Length = 512

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 152/381 (39%), Gaps = 53/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  DSR +     F  I G H DGH FI  AV  GA  +V   + V       I V 
Sbjct: 37  ITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAGASAIVTTREDVEV--PEGIAVL 94

Query: 87  GVDDVLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V ++  AL+ +        AR   K  ++ ITG+ GKTTT  +    L         IG
Sbjct: 95  RVKELQPALDTIVPYFHDYPAR---KMRVVGITGTNGKTTTSYITRAILRKAGYKVGLIG 151

Query: 142 SYNNHIG---VPL------------TLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    I    +P+            TLA M    +D+ + E+    L + R     +   
Sbjct: 152 TIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVMEVSSHALDQNRVAG--IEFD 209

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIFLNYDDSFFELLKAKSH 240
            AV T +   HL     ++    AKA++F+ + +TG     T  +N DD+    + A  H
Sbjct: 210 TAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKTAVVNIDDAVGATMLA--H 267

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMAQNML 297
           A      Y+    K AD  LR        +  E  L  +S   M +  H  G     N++
Sbjct: 268 AKCKHLTYAI--EKEAD--LRATDILVHANGAEFVLHHESFGEMPLKLHITGIFNVYNVM 323

Query: 298 MTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +G  + L   +D A+  + L  F    GR +  +    Q F  ++D  Y   P  ++ 
Sbjct: 324 SAVG--AALAEHIDAAVIKETLEAFTAVPGRFELVKAG--QDFSIIVD--YAHTPDGVEN 377

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +    +I+   + R IAV G
Sbjct: 378 VLKTARKIA---KKRIIAVFG 395


>gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
 gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
          Length = 494

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 132/335 (39%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H+F  + +++G  +VVVN   ++   +  + +P
Sbjct: 23  VDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELEGEVTQVIVP 82

Query: 85  VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                      + L VA+ L          + T   +TG+ GKT+   M+ +    + K 
Sbjct: 83  -----------DTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKN 131

Query: 137 YACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELGMS----HLGEIRFL 178
            A +G+    I           P T++     +  VD +     + +S     LG +R  
Sbjct: 132 SAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLGRLRG- 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFEL 234
              V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F   
Sbjct: 191 ---VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEF--- 244

Query: 235 LKAKSHALGIKT---IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
               SH L   T   ++++G    A F  +   +  +    ++        V    +G  
Sbjct: 245 ----SHYLASVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYRVKSPYVGRF 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              N++  +  V    A ++  I A++   P EGR
Sbjct: 301 NISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGR 335


>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 491

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 145/371 (39%), Gaps = 42/371 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR + P   F  I G   DGH F   AV+ GA  ++    +      +SIPV  V 
Sbjct: 26  IAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVIYVR 80

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+    I
Sbjct: 81  DSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKI 140

Query: 148 G---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           G          P  LTL     D     V   + E+    L + R   +     +AV   
Sbjct: 141 GDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAVFMN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHALGIK 245
           ++  HL     +EE A+AK+ +F  L  +          LN DD     ++  + A    
Sbjct: 199 LSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA---- 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG  + ADF+    +  S  S  +++    +  +    IG     N+L  +     
Sbjct: 255 HVITFGIKQQADFKANNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFA 314

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++ AIK +      +GR +       Q F  ++D  Y   P  +   ++VL  I+ 
Sbjct: 315 LHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLETIAE 367

Query: 366 HGEGRRIAVLG 376
             E R   V+G
Sbjct: 368 FAEKRVFVVVG 378


>gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 489

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 136/350 (38%), Gaps = 48/350 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL  +  H++       +  I  DSR     +AF AI+G   DGH FI  AV+ 
Sbjct: 1   MKQLKDLLFGVSLHAVSGSTAVGIESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKN 60

Query: 64  GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAIT 114
           G   V+      D+   +  + +      D   AL  +A       +A LR    ++ +T
Sbjct: 61  GVRAVICEELPQDLADGVTYVEVA-----DTQLALAVMASNYYGNPSANLR----LVGVT 111

Query: 115 GSVGKTTTKEML---------TIALSSIKKTYACIGSYNNHIGVP--LT----LARM-PV 158
           G+ GKTT   +L          + L S  K       +   +  P  LT    L+RM   
Sbjct: 112 GTNGKTTVSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEA 171

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            V+F   E+    + + R  T  +     + T ++  HL       +    K ++F+GL 
Sbjct: 172 GVEFCFMEVSSHGIAQRR--TEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDGLP 229

Query: 219 KTGTIFLNYDDS--FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           K+     N DD    F +   ++  L      ++     ADF+ +  +Q  +   +++Q 
Sbjct: 230 KSAFALTNADDKNGLFMIQNTRARKL------TYALRSYADFRAQILEQQLDGQLLKIQ- 282

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                EV    IG   A N+L      S+L       ++ LS     +GR
Sbjct: 283 ---DNEVWTKLIGQFNAYNLLAIYATASLLGLGQLEILQLLSGLQTVDGR 329


>gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
          Length = 483

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 150/367 (40%), Gaps = 41/367 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  DSR IA    F A++G   DGH FI  A+QKGA LV V+ ++    G   I +  +
Sbjct: 27  GMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSKEVSCQQGIGYILIKNL 86

Query: 89  DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              LG L     A+      + K  I+ +TG+ GKTTT  +L   L   K   A  G+  
Sbjct: 87  RKHLGVL-----ASNFYDWPQKKMKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIE 139

Query: 145 NHIGVPLTLA--RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------------AVI 189
             IG  +  A    P  +D  I  +  +H   + ++   V  H              A+ 
Sbjct: 140 YKIGKEVIEAPNTTPESLDL-IKMIKKAHDQGLEYIVMEVSSHALELGRVNMLEFDGAIF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E+   AK ++F  L   G    N DDS+ + L  + H +      S
Sbjct: 199 TNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKGIKIFNIDDSYGKRLWEEFHGV------S 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G +K AD Q +       +  +E+ L G   E     +G     N+L +L +V  L   
Sbjct: 253 YGMNK-ADVQGKILAFEGGREEIELSLFGNKKECKIQILGGFNLYNLLGSLALVKELGMS 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +     L       GR +   C   Q +  +ID ++  +     A  ++L  +     G
Sbjct: 312 DEDIFSKLGNLKGAPGRFETLDCG--QDYMVIIDYAHTGD-----ALENILQAVQEIKSG 364

Query: 370 RRIAVLG 376
           + I + G
Sbjct: 365 KIITIFG 371


>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 482

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 150/372 (40%), Gaps = 43/372 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I IDSR +     F A+ G   DG  FI  AV +GA  +V   + V   GS +IP+  VD
Sbjct: 20  ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVCRHNEVEYCGS-AIPIV-VD 77

Query: 90  DVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D    L +LA         +  II +TG+ GKTT   +L     +       IG+     
Sbjct: 78  DPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTIAYRW 137

Query: 148 G-----VPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  PLT          LA+M VD    +F    SH  + R +  +    + + T +
Sbjct: 138 PGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGISFKGV-IFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEI-FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL     ++E   AKA + FE   K   +  + D+ +      +  A  +  I  FG
Sbjct: 197 TQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQW-----GRKLAKLVPEIIGFG 251

Query: 252 KSKNADFQLRKWK----QCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             KN   Q+  +       S ++ + +Q+  + K  E+    +G H A+N+L     V  
Sbjct: 252 -FKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLA----VQA 306

Query: 306 LTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++  +  A +    F    G  G+  R    +     +D ++  +     A I+VLS + 
Sbjct: 307 ISLQLGLAPEDFCCFEKFTGVPGRLERIVNKKQLDIFVDYAHTPD-----ALINVLSALR 361

Query: 365 PHGEGRRIAVLG 376
             G  R I V G
Sbjct: 362 DVGFKRIITVFG 373


>gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium
           'Dutch sediment']
          Length = 460

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 13/146 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-NNHIGVPLTLARMPVDVDFGI 164
           S AT I ITG+ GK+TT  ++   L       A + SY   +IG PL   R+   +  G 
Sbjct: 107 SDATFIGITGTNGKSTTTTLIGAMLKQ-----AGLPSYVAGNIGTPL--CRVAPSLAAG- 158

Query: 165 FELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E  ++ L   +  T    RP +A++  +AP HL  +  +E+   AKA IFE    +   
Sbjct: 159 -ECVVAELSSFQLETIDEFRPRVALLLNLAPDHLDRYDQVEDYYRAKARIFENQRPSDFA 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYS 249
            +N DD    +L+  + A G +  +S
Sbjct: 218 VINADDPL--VLQVSAQARGRRIAFS 241


>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580]
          Length = 488

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 147/382 (38%), Gaps = 58/382 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHD+   A +KGA  +V   ++ A      +PV 
Sbjct: 24  ITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREVDA-----DVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            +     AL  L+ A   +   +  +I ITG+ GKT+T  M+             IG+  
Sbjct: 79  IIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMY 138

Query: 144 ----------NNHIGVPLTLA---RMPVD--VDFGIFELGMS--HLGEIRFLTHLVRPHI 186
                      N     +TL    R  VD  VD  + E+     H+G +    H     I
Sbjct: 139 TKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGRV----HGCDYDI 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237
           A  T +   HL     +EE   AK+ +F  L      E      LN DD   ++F  + +
Sbjct: 195 AAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASAYFAQVTS 254

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H L      ++G   +AD      K   + +  ++     S +V    +G     N+L
Sbjct: 255 -AHLL------TYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVL 307

Query: 298 M---TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                     I  A +   I+ L     K  RG+       Q F  ++D  Y   P S++
Sbjct: 308 TAAAIAIAADIPFATITEGIEGL-----KGVRGRFELVDAGQDFPVIVD--YAHTPDSLE 360

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
             ++    ++   EG+   V+G
Sbjct: 361 NVLNTCRGLT---EGKLFVVVG 379


>gi|312114846|ref|YP_004012442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219975|gb|ADP71343.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 470

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R+ +   +IAITG+ GK+TT  +    L++  +   C G+    +   L L    VD   
Sbjct: 109 RVGANCPVIAITGTNGKSTTTALSNHLLNAAGRASVCGGNIGRAV---LDLPPF-VDGQH 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     LT  + P   ++  I P H+     +E  A+ K ++F  +   GT
Sbjct: 165 YVLELSSFQLD----LTPSLDPDAGILLNITPDHIDRHGSLEGYAAVKEKLFANMTGGGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTI 247
             +  DD+  + + A++ A G++T+
Sbjct: 221 AVIGADDALCDAIAARAEARGVRTL 245


>gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
 gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
          Length = 464

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 44/316 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128
           NT++ A+ G L IPV    ++L  L +             IA+ G+ GKTTT  ++   +
Sbjct: 77  NTEVSAARGRL-IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGIL 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +++  T+  IG   N IG    L +       G + +  +   +  FL  L++P +AV
Sbjct: 127 GEANLDPTF-VIGGQVNSIGANSRLGK-------GEYLVAEADESDASFL--LLQPLLAV 176

Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
           IT +   H+  + G    + +A  E    L   G   +  DD    ELL         + 
Sbjct: 177 ITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPGIG-----RP 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVS 304
           + ++G  K AD+ LR+ KQ   Q+  +V   GK   + VV +  G H A N L  + +  
Sbjct: 232 VLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTVVLNLPGAHNALNALAAIAVAH 291

Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359
            L    D+AI+  L  F    G G+R++C    A   G   L+D+ Y  +P  + A +  
Sbjct: 292 ELGI-ADSAIQRFLKGF---SGIGRRFQCYGEIATPAGKVLLVDD-YGHHPRELAATLEA 346

Query: 360 LSQISPHGEGRRIAVL 375
           +    P    RR+ V+
Sbjct: 347 IRAGWPE---RRLVVI 359


>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
 gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
          Length = 483

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 43/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           + G++IDSR I     F AI G   DGH FI  A++ GA  V+           ++ + V
Sbjct: 23  ITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELGATAVLCEKLPEEQDPKVTFVQV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  +G +         R K  ++ +TG+ GKTT   +L             + +  N
Sbjct: 83  ASTESCVGEVATQFYGDPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCN 141

Query: 146 HIG-----------VPLTLARM-----PVDVDFGIFE-----LGMSHLGEIRFLTHLVRP 184
           +I             P+ L R+         ++   E     +    +G ++F   L   
Sbjct: 142 YIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYAFMECSSHAIAQKRIGGLKFAGGL--- 198

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                T +   HL      E    AK   F+GLEK      N DD    ++     A   
Sbjct: 199 ----FTNLTRDHLDYHKTFENYRDAKKAFFDGLEKDAFAITNADDKNGMVMVQNCKA--- 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + ++     ADF+  K  +C  +  M + + GK  EV    IG     N+L   G   
Sbjct: 252 -NVKTYSTRTMADFKA-KIIECHFEG-MYLDINGK--EVGVQFIGKFNVSNLLAVYGAAV 306

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  +  +S      GR +       +G+  ++D  Y   P +++  ++ + ++ 
Sbjct: 307 MLGKKPEDILLIMSTLKSVNGRLEPIHSP--EGYTAIVD--YAHTPDALENVLNAIHEVL 362

Query: 365 PHGEGRRIAVLG 376
            +G+G+ I V G
Sbjct: 363 -NGKGKVITVCG 373


>gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
 gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
          Length = 501

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 153/411 (37%), Gaps = 58/411 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T   L +A+       + Q     +  DSR I P + F A  G   DG   +  A
Sbjct: 1   MNALHTLTTLQEAVD-----WLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RSKATII 111
           V +GA   +V  + V        P     D + AL  L  A  +           +  ++
Sbjct: 56  VARGAAACLVECEGVE-------PFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVL 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLARM------PV 158
           A+TG+ GKT+T   L  AL+ + K         A +G+    +GVP  L         PV
Sbjct: 109 AVTGTNGKTSTAWWLADALNQLSKEELPALAGCALVGTLG--MGVPPALQTTGMTTPDPV 166

Query: 159 DVD--FGIF-ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            +   F  F E G        S +G         R H+A+ T     HL    G+     
Sbjct: 167 RLQRAFAQFAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQ 226

Query: 209 AKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           AK  +F+  GL       +N DD     L A+     +  ++S      A  Q +     
Sbjct: 227 AKRALFDWPGLRAA---VVNVDDPQGAALHAELQGSDLD-LWSISLQGPARLQAKHIVHT 282

Query: 267 SEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                + V  +G   EV+    IG +   N+L  +  +  L   +  A++A +   P  G
Sbjct: 283 GAGLALTVA-EGAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPG 341

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           R ++   A       L+   Y   P ++  A++ L  ++    GR   V G
Sbjct: 342 RMEQLAAAGQ----PLVAVDYAHTPDALHQALAALKPVAAQRGGRLWCVFG 388


>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium medicae WSM419]
 gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
           WSM419]
          Length = 486

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 154/393 (39%), Gaps = 44/393 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +F +L   ++G +  I     + GI+ DSR + P + F A+ G   DG  +I  A+ +GA
Sbjct: 10  SFPELSAQLKGDAANIE----IGGITADSRQVRPGDLFVAVAGAKADGSAYITDALSRGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT---- 121
             VV  T   A  G   I VF + +    L K + +   R   T++A+TG+ GKT+    
Sbjct: 66  SAVVAGTSARAEAG---INVFTISEPRRFLAKASSSFFGRQPETMVAVTGTAGKTSVASF 122

Query: 122 TKEM------------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELG 168
           T+++             T  +S  +  Y  + + +     P++L ++  ++ D G+    
Sbjct: 123 TRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPD-----PVSLHKLLAELADEGVTHAA 177

Query: 169 M---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           M   SH L + R     V    A  T +   H+     +E   ++K  +F  L   G+  
Sbjct: 178 MEASSHGLDQQRL--DGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLPKGSPA 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEV 283
           + + D  +      +       + + G  +N DF  L++ +    +   EV +     E+
Sbjct: 236 VIFADDQWSADAIAAARKAGHDVRTVG--RNGDFIALKRVEHFRHKQSAEVHVGDDIYEI 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L+  G+          A  AL       GR          G    +D
Sbjct: 294 HVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGR-LELVGQTKDGALAYVD 352

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++    +VL  + P   GR + V G
Sbjct: 353 --YAHKPDALS---NVLESLRPFTTGRVVVVFG 380


>gi|289443662|ref|ZP_06433406.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46]
 gi|289416581|gb|EFD13821.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46]
          Length = 258

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 39/207 (18%)

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    +     A V+    AL+   P      R +        T+ID++YNA
Sbjct: 55  GDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSR--HRMQVTTRGDGVTVIDDAYNA 112

Query: 349 NPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S + +
Sbjct: 113 NPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVV 172

Query: 407 SGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-----------LVD----------- 443
            G           RSI  +H+   ++G +   +++           + D           
Sbjct: 173 VGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAE 223

Query: 444 ---GDVVVVKSSNSCGFYRLINLLLEE 467
              GDVV+VK+SN+ G   + + L+ +
Sbjct: 224 LRPGDVVLVKASNAAGLGAVADALVAD 250


>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
 gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 453

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           +IAITGS GKTTT  +    L S  K     G    +IG P ++ A++  D  + + E+ 
Sbjct: 110 VIAITGSNGKTTTTSLCGDILQSGGKKTLVGG----NIGTPAISFAQLANDDTWSVLEIS 165

Query: 169 MSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L  I RF     RP IA I  I P HL      E+ A+AK  IFE   +     LN 
Sbjct: 166 SFQLETIERF-----RPEIAAILNITPDHLDRHGTFEKYAAAKERIFENQREHDFAILNA 220

Query: 228 DDS 230
           D+ 
Sbjct: 221 DNE 223


>gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437]
          Length = 466

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 27/266 (10%)

Query: 111 IAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M+  T+       TY  IG     +G        P       + + 
Sbjct: 110 IAVAGAHGKTTTSSMIAQTMEEGGADPTY-VIGGEVVSLGSNAKAGSSP-------YVVA 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL +   P IAV+T I P HL N+ G  E++  A       +++ G   L +
Sbjct: 162 EADESDGTFLEYF--PRIAVVTNIEPDHLENYEGSFEKLKEAYRRFLSQVKEDGVAILGW 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           DD +   +     A     + ++   + AD+     +Q   ++   V  QG  + +V  H
Sbjct: 220 DDPYLPEIAGACRA----RVITYALDREADYTATHLQQVLNRTQFTVNYQGTPLGDVTIH 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +        DT  + LS F    G  +R++  + +    L+ + Y
Sbjct: 276 VPGRHNVANALAAVVVCLEAGLPFDTIAEGLSRFR---GAKRRFQV-IGEADGILVVDDY 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRI 372
             +P  ++A I+ L  ++     RRI
Sbjct: 332 AHHPTEIRATINGLKALN-----RRI 352


>gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC
           19707]
 gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC
           19707]
          Length = 476

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 44/316 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128
           NT++ A+ G L IPV    ++L  L +             IA+ G+ GKTTT  ++   +
Sbjct: 89  NTEVSAARGRL-IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGIL 138

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +++  T+  IG   N IG    L +       G + +  +   +  FL  L++P +AV
Sbjct: 139 GEANLDPTF-VIGGQVNSIGANSRLGK-------GEYLVAEADESDASFL--LLQPLLAV 188

Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
           IT +   H+  + G    + +A  E    L   G   +  DD    ELL         + 
Sbjct: 189 ITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPGIG-----RP 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVS 304
           + ++G  K AD+ LR+ KQ   Q+  +V   GK   + VV +  G H A N L  + +  
Sbjct: 244 VLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTVVLNLPGAHNALNALAAIAVAH 303

Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359
            L    D+AI+  L  F    G G+R++C    A   G   L+D+ Y  +P  + A +  
Sbjct: 304 ELGI-ADSAIQRFLKGF---SGIGRRFQCYGEIATPAGKVLLVDD-YGHHPRELAATLEA 358

Query: 360 LSQISPHGEGRRIAVL 375
           +    P    RR+ V+
Sbjct: 359 IRAGWPE---RRLVVI 371


>gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
 gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
          Length = 495

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 30/275 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P   + G+ +DSR++ P E F A++G  +DG  ++  A   GA   +V  ++      L
Sbjct: 27  LPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRAYLSQAAAAGAVAALVEDELPGEEPPL 86

Query: 82  SIPVFGVDDVLGALNKLA-VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKT 136
              V     + G  +KL  +A R     +    + A+TG+ GKTT  ++    L S    
Sbjct: 87  PCVV-----IPGLRHKLCEIAGRYYRDPSRQMHVAAVTGTNGKTTVSQLFAQLLRSAGYD 141

Query: 137 YACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPHI------- 186
              IG+    +  GV  ++   P  +   + E+  S  G+ + F++  V  H        
Sbjct: 142 CGVIGTLGASLTAGVQDSVHTTPDSI--AMQEILASWAGQAVPFVSMEVSSHALDQGRVN 199

Query: 187 ------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                 A+ T +   HL     +E   +AKA +F   E   T  LN DD F ++L  +  
Sbjct: 200 GLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLF-AFESLRTAILNSDDPFSDVLAGR-M 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           +LG+  +       +AD +L   +  S    M ++
Sbjct: 258 SLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLE 292


>gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii
           37]
 gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas ingrahamii 37]
          Length = 509

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 97/229 (42%), Gaps = 25/229 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V+G+++DSR I     F A++G  +DG  FI  +++ GA  V+  T   +  G ++
Sbjct: 23  PSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKMGACAVLSETKNRSEHGQVT 82

Query: 83  I----PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKT 136
           I    PVF V      L+ LA     R      +IA+TG+ GKTT   +L  +   + K 
Sbjct: 83  IKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTNGKTTIASLLADSFMLLGKQ 142

Query: 137 YACIGSYNNHI------GVPLTLARMPV----------DVDFGIFELGMSHLGEIRFLTH 180
            A +G+  N +       +  TL  + V            ++ I E+    L + R    
Sbjct: 143 SAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCYQQQRAEYTIMEVSSHGLDQGR--VS 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            V    A+ T +   HL     +E    AK  +FE       I +N DD
Sbjct: 201 AVPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQRI-INADD 248


>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes Clip81459]
 gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-064]
 gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 1816]
          Length = 491

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 145/371 (39%), Gaps = 42/371 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR + P   F  I G   DGH F   AV+ GA  ++    +      +SIPV  V 
Sbjct: 26  IAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVIYVR 80

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+    I
Sbjct: 81  DSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKI 140

Query: 148 G---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           G          P  LTL     D     V   + E+    L + R   +     +AV   
Sbjct: 141 GDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAVFMN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHALGIK 245
           ++  HL     +EE A+AK+ +F  L  +          LN DD     ++  + A    
Sbjct: 199 LSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA---- 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG  + ADF+    +  S  S  +++    +  +    IG     N+L  +     
Sbjct: 255 HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFA 314

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++ AIK +      +GR +       Q F  ++D  Y   P  +   ++VL  I+ 
Sbjct: 315 LHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLETIAE 367

Query: 366 HGEGRRIAVLG 376
             E R   V+G
Sbjct: 368 FAEKRVFVVVG 378


>gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 497

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 65/375 (17%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  M+++  A + +  T+   G       N H+G    L     + D  
Sbjct: 142 IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 201

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P I+++T I P H+  + G  +E+          L   G 
Sbjct: 202 FLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGL 246

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             L  DD   E+L      +G + + ++G S+NAD+++  ++Q   Q  +  +   G+ +
Sbjct: 247 AVLCADD---EVLMELVPLVG-RQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERI 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336
           +V+ +  G H A N    L +        D  + AL+ F   +G G+R+   L Q     
Sbjct: 303 DVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADF---QGAGRRFD-QLGQFIRPN 358

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  LSQ
Sbjct: 359 GKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 415

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQS 439
              +D+  +L +Y      + G    A   AL RSI        +  S+T + L   +  
Sbjct: 416 ---VDVLIMLDVYPAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-EQLGEVLDQ 467

Query: 440 SLVDGDVVVVKSSNS 454
            + DGD+++ + + S
Sbjct: 468 IIQDGDLILAQGAGS 482


>gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 472

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 31/314 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNN-----HI 147
           L++    A L +   +  I G+ GKT+T  MLT+AL + +   ++A  G  N      H 
Sbjct: 102 LHRAQALAGLMAGHRVACIAGTHGKTSTTSMLTVALQNCRMDPSFAIGGDLNESGANAHH 161

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G            + G+F +  +   +  FLT+   P +AV+T + P HL +    E   
Sbjct: 162 G------------EGGVF-VAEADESDGSFLTYT--PSVAVVTNVEPDHLDHHGTAEAYV 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQC 266
              ++    +E  G + +  DD     L  ++ A G++   Y    S   D ++  +   
Sbjct: 207 KVFSDFVGQIEPGGLLIVCADDEGAARLGEEAAAAGVRVRRYGRAASGEGDVRVLDYTPA 266

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +   + + L G+  ++     G HMA N +  L     L A +D     L+ F    G 
Sbjct: 267 PDGGVVRIALDGEEHDLRVAVPGEHMALNAVAALLAGLELGAPLDGMAAGLAAFG---GV 323

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R+      G   + D+ Y  +P  + A +  +   +  G GR + V      +   +Q
Sbjct: 324 RRRFEFKGRAGDVRVYDD-YAHHPTEVAAQLRAVRTAA--GNGRVVVVF--QPHLYSRTQ 378

Query: 387 SFHIDLAEVLSLYN 400
           +F  + AE LSL +
Sbjct: 379 TFAAEFAEALSLAD 392


>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
 gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
          Length = 491

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 42/374 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR + P   F  I G   DGH F   AV+ GA  ++    +      +SIPV 
Sbjct: 23  ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+  
Sbjct: 78  YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG          P  LTL     D     V   + E+    L + R   +     +AV
Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242
              ++  HL     +EE A+AK+ +F  L  +          LN DD     ++  + A 
Sbjct: 196 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG  + ADF+    +  S  S  +++    +  +    IG     N+L  +  
Sbjct: 255 ---HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++ AIK +      +GR +       Q F  ++D  Y   P  +   ++VL  
Sbjct: 312 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 364

Query: 363 ISPHGEGRRIAVLG 376
           I+   E R   V+G
Sbjct: 365 IAEFAEKRVFVVVG 378


>gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Listeria monocytogenes str. Scott A]
          Length = 494

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 42/374 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR + P   F  I G   DGH F   AV+ GA  ++    +      +SIPV 
Sbjct: 26  ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 80

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+  
Sbjct: 81  YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 140

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG          P  LTL     D     V   + E+    L + R   +     +AV
Sbjct: 141 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242
              ++  HL     +EE A+AK+ +F  L  +          LN DD     ++  + A 
Sbjct: 199 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG  + ADF+    +  S  S  +++    +  +    IG     N+L  +  
Sbjct: 258 ---HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 314

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++ AIK +      +GR +       Q F  ++D  Y   P  +   ++VL  
Sbjct: 315 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 367

Query: 363 ISPHGEGRRIAVLG 376
           I+   E R   V+G
Sbjct: 368 IAEFAEKRVFVVVG 381


>gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
 gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
          Length = 480

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 155/370 (41%), Gaps = 37/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G +ID+R +AP   F A +G   +G DFI  AVQ GA  VV   +     G++ I   
Sbjct: 24  VSGFAIDNRKVAPGTVFGAFQGARMNGEDFIPAAVQAGAVAVVARPEARVE-GAIHI--- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
             D+      +LA           +A+TG+ GKT+T E+       +    A IG+    
Sbjct: 80  AHDNPRRLFAQLAARYFAPFPEMTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVT 139

Query: 145 ---NHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
              + +   LT    P  V F     G+   G++H        G  ++ T  +    A  
Sbjct: 140 TSVDQVSTGLT---TPDIVTFLSNMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL     ++    AK  +F+G +   G   +  DD + + +  ++   G++ + 
Sbjct: 197 TNLSRDHLDYHGDMDSYFEAKMRLFDGVVAPDGAAVVWADDEWSDKVIRRATKRGLR-VL 255

Query: 249 SFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           S G    A   LR   +   Q    +EV+++GK  +V    IG + A N L    +V   
Sbjct: 256 SVGVQGQA---LRLANRTPTQLGQTLEVEVEGKPYKVSLPLIGAYQAANALTAAALVIAG 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             DV   ++ L    P  GR +R       G    +D  Y   P  ++AAI  L    PH
Sbjct: 313 GEDVGKVLELLGRVQPVRGRLERA-VITRAGAPVYVD--YAHTPDGLRAAIEAL---RPH 366

Query: 367 GEGRRIAVLG 376
            +GR I + G
Sbjct: 367 TKGRLITLFG 376


>gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis Z2491]
 gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis Z2491]
          Length = 445

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGAPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEYEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CMR15]
          Length = 483

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  Q
Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  D D
Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVAGKIEPIFVEQIEDMPQAILDAAQDND 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|289550504|ref|YP_003471408.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180036|gb|ADC87281.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 437

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 123/304 (40%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPQS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++  RP  A++T I   H   F  +E++  A  E+   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--RPDYAIMTNIDFDHPDYFKDVEDVFDAFQEMANNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD     L           IY +G S   D      +   + +  +V + GK  + 
Sbjct: 201 IAWGDDEHLRKLNVDI------PIYYYGLSDKDDVYANDIQITDKGTEFDVYINGKYYDH 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H  QN L  + I  +   DV    +AL  F    G  KR           L+
Sbjct: 255 FLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETF----GGVKRRFNETKYDQQVLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +  +   LS++ H+ L
Sbjct: 311 DD-YAHHPREISATIETARKKYPNKEVIAVFQPHTFSRTQAFLNEFAD--SLSKADHVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
 gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
          Length = 482

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVA 76
           P+  V G+++DSR + P   F A+ G   PH    DGHDF+  A+ +GA  VV    +  
Sbjct: 16  PEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALARGAVAVVGEKPL-- 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +L +P   V D   AL  LA         K  ++ +TGS GK+TT  +L   L   +
Sbjct: 74  ---ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGSKGKSTTASLLHHLLKRAQ 130

Query: 135 KTYACIGSYNNHIGVPLTLARMPV 158
              A + +    +G     AR PV
Sbjct: 131 GGSALLSTVGLRLG---EEARPPV 151


>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
 gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
          Length = 487

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 147/374 (39%), Gaps = 47/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+  DSR +  Q  F A KG   +GH FI  A++KGA +VV   + +  +    +   
Sbjct: 24  VQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEKGATVVVC--EDLPGLTHAEVTYV 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML---------------TIA 129
            V +   AL  +A         K ++I +TG+ GKTT   +L               TI 
Sbjct: 82  VVPNSQEALGVMAANWFDHPSKKLSLIGVTGTNGKTTVTSLLYALFTKAGYPSGLISTIK 141

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRF--LTHLVRPHI 186
           +   +K Y    +  +   +   L  M  + +     E+    + ++R   LT       
Sbjct: 142 ILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVSSHGIAQMRIKGLTF----EG 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHAL 242
           A+ T ++  HL            K  +F+GL  T    +N DD       +  KAK  + 
Sbjct: 198 AIFTNLSQDHLDYHKTFANYRDTKKLLFDGLSTTAFALVNSDDKNGLFMLQNTKAKKMSY 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+K +        ADF+     Q  E  +    L+    EV    +G   A N+L     
Sbjct: 258 GLKGV--------ADFK----AQILENQFSGQLLKIDQQEVWTTLLGQFNAYNILAIYAT 305

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++L  +    ++ +S      GR  +Y  + NQ    ++D  Y   P ++   +  + Q
Sbjct: 306 ATLLGLNTLEVLQHISTLENVAGRF-QYFISKNQ-ITAIVD--YAHTPDALDNILETIGQ 361

Query: 363 ISPHGEGRRIAVLG 376
           I    E + I V+G
Sbjct: 362 IRTKNE-KLITVVG 374


>gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
 gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
          Length = 488

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKGLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
 gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
          Length = 482

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVA 76
           P+  V G+++DSR + P   F A+ G   PH    DGHDF+  A+ +GA  VV    +  
Sbjct: 16  PEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALARGAVAVVGERPL-- 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +L +P   V D   AL  LA         K  ++ +TGS GK+TT  +L   L   +
Sbjct: 74  ---ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGSKGKSTTASLLHHLLKRAQ 130

Query: 135 KTYACIGSYNNHIGVPLTLARMPV 158
              A + +    +G     AR PV
Sbjct: 131 GGSALLSTVGLRLG---EEARPPV 151


>gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
          Length = 490

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 144/373 (38%), Gaps = 36/373 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           ++GI+ DSR   P   F A++G H DG  +I  A  +GA  V++  D     G    P  
Sbjct: 25  IHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQGAAAVLLEAD----PGFTPPPDA 80

Query: 85  -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 D   AL ++A A   R  A I AITG+ GKT+T E L    +        IG+ 
Sbjct: 81  TYLVAADARAALARIARALTPRVPAHIAAITGTNGKTSTAEFLRQIWTVQALPAGTIGTL 140

Query: 144 NNHIGVPL----TLARMPVDVDF-----GIFELGMSHLG--------EIRFLTHLVRPHI 186
                 PL     +   P  V        + + G+ H+         E R L  L  P+ 
Sbjct: 141 GAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEHVAIEASSHGLEQRRLDGLA-PYA 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF---LNYDDSFFELLKAKSHALG 243
           A  + +   HL      E   +AK  +F+ +   G I     + DD+    L+A +   G
Sbjct: 200 AGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIAAFNADMDDATCAALRAIAARRG 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +      +    +L   +       + V     + E+    +G     NML+   + 
Sbjct: 260 L--VLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREMEVPLVGRFQVDNMLLACAMA 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+  L   H   GR +R    L+ G    +D  Y   P +++    +L  +
Sbjct: 318 GRDEGAADHAVSLLPRLHGVRGRMERA-AVLDSGAAAYVD--YAHTPDAIE---RLLCSL 371

Query: 364 SPHGEGRRIAVLG 376
            PH  GR + V+G
Sbjct: 372 RPHTPGRLVIVMG 384


>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
 gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
          Length = 488

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 147/382 (38%), Gaps = 58/382 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHD+   A +KGA  +V   ++ A      +PV 
Sbjct: 24  ITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREVDA-----DVPVI 78

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            +     AL  L+ A   +   +  +I ITG+ GKT+T  M+             IG+  
Sbjct: 79  IIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMY 138

Query: 144 ----------NNHIGVPLTLA---RMPVD--VDFGIFELGMS--HLGEIRFLTHLVRPHI 186
                      N     +TL    R  VD  VD  + E+     H+G +    H     I
Sbjct: 139 TKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGRV----HGCDYDI 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237
           A  T +   HL     +EE   AK+ +F  L      E      LN DD   ++F  + +
Sbjct: 195 AAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASAYFAQVTS 254

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H L      ++G   +AD      K   + +  ++     S +V    +G     N+L
Sbjct: 255 -AHLL------TYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVL 307

Query: 298 M---TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                     I  A +   I+ L     K  RG+       Q F  ++D  Y   P S++
Sbjct: 308 TAAAIAIAADIPFATITEGIEGL-----KGVRGRFELVDAGQDFPVIVD--YAHTPDSLE 360

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
             ++    ++   EG+   V+G
Sbjct: 361 NVLNTCRGLT---EGKLFVVVG 379


>gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
 gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
          Length = 465

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 22/150 (14%)

Query: 95  LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           + ++ +A RLR    A  +A+TG+ GKTT   MLT  L++       +G    ++G P+ 
Sbjct: 88  IGEVELAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAAGHAALAVG----NVGTPVV 143

Query: 153 LARM-PVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            A   P DV   +   F+L  S           + PH A +  +AP HL     +EE A 
Sbjct: 144 EAVTGPADVLAVELSSFQLHRSPS---------LAPHTAAVLNVAPDHLDWHGSLEEYAR 194

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            K EIF    + GT+  N DD +   L A 
Sbjct: 195 VKGEIF---TRAGTVVHNADDEWSARLAAP 221


>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechocystis sp. PCC 6803]
 gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
          Length = 505

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 32/371 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-V 85
           V G+S +S +  P   F  + G   DG +F   A++ GA   VV+   +      +   V
Sbjct: 35  VTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGECV 94

Query: 86  FGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
             V D++     LA A       T  ++ +TG+ GKTTT  ++   L+  +++ A +G+ 
Sbjct: 95  IAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTL 154

Query: 143 YNNHIGVPLTLAR-MPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHIA 187
           Y    G   T     P   D              + + E+    L + R L        A
Sbjct: 155 YTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFA--CA 212

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +E   +AKA +F+     G   +N DD + + L  +   L +  +
Sbjct: 213 VFTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDR---LPLDQV 269

Query: 248 YSFG-KSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           Y++      ADF  +    Q +      V  QG+    +   +G     N+L  +     
Sbjct: 270 YTYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGE-FPFLSPLVGQFNLANVLAAIASGLH 328

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D    +K L  F    GR ++ +   +Q    ++D  Y   P S++ A+       P
Sbjct: 329 LGLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVD--YAHTPDSLENALKAARPFIP 386

Query: 366 HGEGRRIAVLG 376
              GR I + G
Sbjct: 387 ---GRLICIFG 394


>gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 535

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 106/497 (21%), Positives = 196/497 (39%), Gaps = 74/497 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+  S+ +     F  IKG   DGH++  HA  +GA +++V  D +  I  + + V 
Sbjct: 29  IKKIAYHSKEVGADTLFVCIKGHQTDGHNYAKHAASQGATVIIVE-DFIEDIHVIQLKVS 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + L  L+        +S   I  +T + GKTT   M+     + +     IG+    
Sbjct: 88  DSREALAILSSNFFDHPSKS-MNIFGVTATNGKTTITYMIEEIFKASQLKSGLIGTILVK 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTH-----------LVRPH-----IAV 188
           I   + ++R+     + +      H   +  R +TH           L R +     +  
Sbjct: 147 IDKEIEMSRLTTPESYDL----QQHFARMRDREITHVSMEVSSSALELKRVYNTDFDVVA 202

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              I+P H+      +    AKA +     K  T  LN D+     L+ ++ A     + 
Sbjct: 203 FMNISPEHIKLHESFDAYFDAKASLIRNASKASTAILNLDEPLLIPLEKETEA----QVI 258

Query: 249 SFG-KSKNADFQLRKWKQCSEQSWMEVQ-------LQGKSMEVVHHG-----IGYHMAQN 295
           +FG ++K+    +   +  S      V        L GK++E+         +GYH   N
Sbjct: 259 TFGIENKSGTITVSDIRFSSGIPSFTVNIRKPFNTLSGKTIEITSFDLEMSVLGYHSIYN 318

Query: 296 MLMTL--GIVSIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L  L  G+V+ L   D+   IK        +G  +R++   ++ F  + D   N N  +
Sbjct: 319 ALTALVTGLVNDLPIEDIQRGIKNF------QGVERRFQVLYDKEFKVIDDLLLNQN--N 370

Query: 353 MKAAISVLSQISPHGEGRRIAVLGD-----MCEMGE-LSQSFH-IDLAEVLSLYNISHV- 404
           + + +  +S +  +      A+ G        E+ E L++ FH + +A+++     SHV 
Sbjct: 371 IDSCMETISHLDYNELHLVHAIRGSNGPAHSTEIAESLTKWFHKMKIAKIILTTAPSHVN 430

Query: 405 --------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC- 455
                    L  F    LK      I V + + +D   LF    L   D++++  ++S  
Sbjct: 431 KIDEVTEEELDAF----LKVMHQNKIEVTFFKELDDTLLFGVEQLNVADILLISGAHSMD 486

Query: 456 -GFYRLINLLLEEFPAI 471
            G  + + LL E +P +
Sbjct: 487 QGARKTLELLKEIYPQV 503


>gi|305432184|ref|ZP_07401348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
 gi|304444727|gb|EFM37376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
          Length = 475

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 121/316 (38%), Gaps = 50/316 (15%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +S+ +F +   L   NK     +   +  II IT S GKT+ K  L   L    KTY   
Sbjct: 128 ISLKIFELFSNLYFKNKAKAKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTP 187

Query: 141 GSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            S N  +G+   +   +  D    I E G    G+I  +T  + P I ++  I  AHL  
Sbjct: 188 RSVNTLLGIIADINTNLSDDTQIYIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEY 247

Query: 200 FSGIEEIASAKAEIFEG--LEK----TGT------IFLNYDDSFFELLKAKSHALGIKTI 247
           F  IE     K E      LEK    T T      + L YDD   + ++A    L  K  
Sbjct: 248 FKNIENTRKTKLEALNSKRLEKAFLHTSTQKSEDELILLYDDK-LQDIQASLQGLEFK-- 304

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                                     + L+ K+ E     +G   AQN+   +   + L 
Sbjct: 305 --------------------------INLENKTYEFKSQILGDFNAQNLCACILCANYLG 338

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++   K +   +  E R +     +++    +ID+ +N N   M A+     ++  + 
Sbjct: 339 VKIEKIQKQVLKINSVEHRLQ----IISKEPKFIIDDGFNGNYKGMSAS----YKLCKNY 390

Query: 368 EGRRIAVLGDMCEMGE 383
           +GR++ V   + E+ +
Sbjct: 391 KGRKVLVSPGIVEVDK 406


>gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 455

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 114/290 (39%), Gaps = 31/290 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVP 150
           L  + +  +  RL  +   IA+ G+ GKTTT  ++   L          IG   N  G  
Sbjct: 89  LPVIPRAEMLGRLMHQWKGIAVAGAHGKTTTTSLVAFLLERTGLDPTVIIGGEMNGFG-- 146

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                   +   G  E  ++   E      L+ P I ++T +   HL  +  ++ I  A 
Sbjct: 147 --------NAKAGGGEYLVAEADESDGSFSLLHPSIVIVTNVEDDHLDYYRTVDAIRRAF 198

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC--- 266
            E    + + G   LNYDD F   L+  +H L    I ++G + +AD++L  +   C   
Sbjct: 199 REFIFKVPRDGVAVLNYDDPF---LRQMAHELPFPVI-TYGCAPDADYRLAGFHLNCAVS 254

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S + +   +L G+    +    G H   N L  + +   L  +     +AL  F     R
Sbjct: 255 SAEVYWRRELLGRFELTIP---GRHNLLNALAVVAVGRHLGLEFPEIARALRDF-----R 306

Query: 327 GKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           G R R  L  +     + + Y  +P  +KA +    Q  P    R IAV 
Sbjct: 307 GVRRRFELVGESRGVRVVDDYAHHPTEIKATLEAARQTRPK---RLIAVF 353


>gi|229220794|ref|YP_208580.3| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|229597261|ref|YP_002002446.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|260439879|ref|ZP_05793695.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|109892712|sp|Q5F6L9|MURC_NEIG1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 468

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 386

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 387 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 446

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + LLE
Sbjct: 447 LNMGAGSIN--RVPSALLE 463


>gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Symbiobacterium thermophilum IAM 14863]
 gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 455

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 22/142 (15%)

Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPL--TLARMP----VD 159
           +A +I +TGS GKTTT  ++  I  ++ ++TY        +IG PL   +  +P    V 
Sbjct: 109 RAPVIGVTGSAGKTTTTTLIGEILRAAGRETY-----VGGNIGKPLIEQVEAIPSEAVVV 163

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           ++   F+L + H            PHIAV+T ++P HL   + +EE   AK  IF     
Sbjct: 164 LELSSFQLQLVHRS----------PHIAVVTNVSPNHLDVHATMEEYVEAKKAIFRRQSP 213

Query: 220 TGTIFLNYDDSFFELLKAKSHA 241
              + LN DD       A++ +
Sbjct: 214 ADWLVLNADDPTVRAFAAEARS 235


>gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           GMI1000]
 gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 483

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  Q
Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  D D
Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 510

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 149/374 (39%), Gaps = 38/374 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82
           V+G+S DSR I    AFF++ G + DG  +I  A+  GA +++     +T+ VA +  + 
Sbjct: 22  VSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANGASVIITDSKYDTNDVAQV--VI 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             +F    + GA            +  I+ ITG+ GKTT   M+   L++       IG+
Sbjct: 80  KDIFRFMSLFGA----KFYNYPDRELNIMGITGTNGKTTVTYMIESILANSGIECGVIGT 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPH-------------IA 187
            N      +  A         I+ +   +S+ G I++L   V  H              A
Sbjct: 136 VNYRYKGKVIEANNTTPQSLDIYRIMRDISNNG-IKYLVMEVSSHALSLGRVYGIEFDTA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSHAL 242
           V T +   HL     ++    AK+ +F+ L            +N DD +   L     + 
Sbjct: 195 VFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCAIINVDDEYGRKLLKVGISA 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK +YS  +   ADF+    K  ++ +   +    K   +    IG H   N L  L  
Sbjct: 255 EIK-LYSAIEKNAADFKASNIKVTNKGAVFNLVFCNKRARIRIKHIGVHNVYNALAALAA 313

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   + A++ L+      GR ++    +  GF  ++D  Y     ++++ +  L  
Sbjct: 314 AVCSEISFENAVEGLNNSSRVPGRLEKVN-TIGLGFEIVVD--YAHTDDALESVLRALKD 370

Query: 363 ISPHGEGRRIAVLG 376
           ++P    R I V G
Sbjct: 371 LNPK---RIIIVFG 381


>gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina
           NCIMB 400]
 gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina
           NCIMB 400]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQADRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++VIT I   H+  + G  E++ +   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D   E+++     +G + + ++G S+ AD Q   + Q   QS   V+  GK ++++V + 
Sbjct: 234 D---EVIREIMPRIG-RQVVTYGFSEEADVQAINFAQNGHQSSFTVKRHGKDNVDIVLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343
            G H   N L  + + S    D    ++AL+ F   EG G+R++         G   L+D
Sbjct: 290 PGEHNVLNALAAIAVASEDDIDDSAIVQALAEF---EGIGRRFQHLGEFETPNGSVMLVD 346

Query: 344 ESYNANP----ASMKAAIS------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P    A++KAA +      ++    PH   R   +  D  ++  LSQ   +D  
Sbjct: 347 D-YGHHPSEVLATIKAARAGWPDKRLVMAYQPHRYSRTRDLYEDFVDV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y      + G    A   AL RSI +       +  + D L   +   L  GD+ 
Sbjct: 401 LLLDVYAAGEAPIPG----ADGRALCRSIRLRGQIDPIFIASPDQLAAVLPDVLQHGDLF 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 MTQGAGNIG 465


>gi|34558797|gb|AAQ75142.1| UDP-MurNac-pentapeptide presynthetase [Alvinella pompejana epibiont
           6C6]
          Length = 475

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           +I +T S GKT+ K  +   LS   + YA   S N   GV   +   +   +   + E+G
Sbjct: 160 VIGVTASYGKTSIKNFIAHLLSKKYRVYATPRSVNTLGGVIRDINENLDEKIQIYVVEMG 219

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
               G+I  +T LV PH A++  I  AH+  F  +E I   K EI
Sbjct: 220 ARERGDILEITQLVNPHYAIVGQIGTAHIEYFKSLENIRDTKMEI 264


>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
 gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++        + +  
Sbjct: 22  NGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNVSYVLIEE 81

Query: 88  VDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +   LG  A N      R   K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 82  IRHKLGYIASNFYEWPQR---KLKIIGVTGTNGKTSSTYMIEKLMGDIPVTR--IGTIEY 136

Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            +G  +   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLELGRVDVIDFDCALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+      +N DD++
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNY 236


>gi|288575843|ref|ZP_05977704.2| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
 gi|288566858|gb|EFC88418.1| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
          Length = 469

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 145/361 (40%), Gaps = 44/361 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGSEQAPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   + L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGF---EGVGRRFQKYGEIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVV 447

Query: 448 V 448
           +
Sbjct: 448 L 448


>gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-23m63]
 gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
 gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
          Length = 450

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 162/388 (41%), Gaps = 59/388 (15%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+         YA +         P  L    + +  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSTIFE-----YADLD--------PTILVGGNLSMIGG 144

Query: 164 IFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             ++G S+     F+T             P I+++  +   HL  FSGI+EI ++  +  
Sbjct: 145 NVKIGNSN----HFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFG 200

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWME 273
           + L   G   +N DD   + +     A    TI  +G+  + D  ++      S      
Sbjct: 201 KLLPPEGYFIINGDDENIDDILYDVKA----TIIKYGRDSDNDAVIKDIHFDNSGHGIFR 256

Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++ QG+ +      + G H   N    +    +   D++T  K + ++   +G G+R+  
Sbjct: 257 IEYQGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIY---KGVGRRFET 313

Query: 333 ALNQGFF--TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEM 381
              +G++   L+ + Y  +P  +KA ++   ++          PH   R  ++L      
Sbjct: 314 ---KGYYKNALVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLL------ 364

Query: 382 GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439
           GE S++F+  D   +  +Y          H   L + L   ++   Y +  + +  +++ 
Sbjct: 365 GEFSEAFYAADKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRE 424

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++ D D+V+  ++ +   Y++ +LL+E+
Sbjct: 425 NVKDNDLVI--TAGAGPIYKVADLLVEK 450


>gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++        + +  
Sbjct: 22  NGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNVSYVLIEE 81

Query: 88  VDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +   LG  A N      R   K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 82  IRHKLGYIASNFYEWPQR---KLKIIGVTGTNGKTSSTYMIEKLMGDIPVTR--IGTIEY 136

Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            +G  +   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLELGRVDVIDFDCALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+      +N DD++
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNY 236


>gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 156/372 (41%), Gaps = 36/372 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ DSR +A    F A+ G   DG  F   A Q+GA  V       A +   ++   
Sbjct: 21  VSDLTADSRQVATGTVFVAVPGTKADGRRFAAQAAQRGAAAVAGEGTRPADLPD-AVAWI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            V D   AL   A         T++A+TG+ GK++  + +   L+ + +  A +G+    
Sbjct: 80  PVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFVRQILARLGRDAASLGTVGIV 139

Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
                        + + +  TLAR+  +   G+ +L M   SH  E R L   VR   A 
Sbjct: 140 TGRGAQYGSLTTPDPVTLHRTLARLAAE---GVTDLAMEASSHGIEQRRLDG-VRLDAAG 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTI 247
            T +   HL   + IEE  +AK  +F  L   G    +N D ++ E + A + A G + +
Sbjct: 196 FTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAYAERVIAAAEAAG-RPV 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL- 306
            + G+    D ++   +         V   G++ ++    +G    +N L+  G+     
Sbjct: 255 RTVGRGGR-DLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQVENALVAAGLALATP 313

Query: 307 --TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              AD D    AL       GR +R   A  +G   L+D  Y   P +++   SVL+ + 
Sbjct: 314 AGAADPDGVFAALDHLTGVPGRMERIGEA--RGGLCLVD--YAHKPEALE---SVLTALR 366

Query: 365 PHGEGRRIAVLG 376
           P   GR +AV G
Sbjct: 367 PFATGRLVAVFG 378


>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 496

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 141/360 (39%), Gaps = 35/360 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+  D+R + P   F AI+G   DGH FI  AV KGA  +VV        G   + V 
Sbjct: 23  VTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKGAAALVVEDKAKIPEGYEGV-VV 81

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +    L+ LA          +  + +TG+ GKT+   M    L+  K     IG+ N
Sbjct: 82  QVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSVTYMTEAILNHGKIPTGVIGTVN 141

Query: 145 NHIGVPLTLARMPV-DVDF-----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           +H+G  +  + M   D  F           G   + M   SH  + R +  +  P   VI
Sbjct: 142 HHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAMEVSSHALDQRRVDSV--PFNTVI 199

Query: 190 -TTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSHALG 243
            T +   HL   + +E    AK  +F  L     ++     +N  D F   L+    A+ 
Sbjct: 200 FTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFAIVNTADKFGRRLRVADPAV- 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++++G+ K++D +    K     +  +V       EV     G H   N L  LG  
Sbjct: 259 ---LWTYGE-KDSDIRYEILKMDFALTHFKVWTPVGEGEVRLPMSGTHNVMNALAALGAG 314

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++  I+AL  F    GR +      N   F      Y   P +++  +  L+++
Sbjct: 315 LSAGLPLNICIEALDRFTGVPGRLQSVPNDKNLSVFV----DYAHTPDALENVLMALTKV 370


>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
 gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
          Length = 497

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 154/370 (41%), Gaps = 30/370 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIP 84
           V GIS +S S   +E F  + G   DG +F   A++ GA  VV++        I  L   
Sbjct: 27  VKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQSAIKAGAVAVVISPQAAIKFPINDLHC- 85

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V+DV+   +++A A  +       +I +TG+ GKTTT  ++   L+  KK  A IG+
Sbjct: 86  VIIVEDVILTASEIATAFYSYPSEDIKMIGVTGTNGKTTTTHLIEYFLTECKKNTALIGT 145

Query: 143 -YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187
            Y+   G   T +   P   +    +L  + + +  +    V  H             ++
Sbjct: 146 LYSRWNGFKQTSIHTTPFSPELQA-QLSQAVIDKNEYCVIEVSSHALVQGRVKGCGFNVS 204

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK  +F      G   +N DDS+ E L      LG + +
Sbjct: 205 IFTNLTQDHLDFHKNLENYFLAKQLLFSPEYLQGKAVVNIDDSYGERL---IQYLGPQKV 261

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           YS+  ++  ADF         ++    ++  G + E     +G     N+L  +  +  L
Sbjct: 262 YSYSIENTMADFHTTNLNYKHDRIEGILKTPGGNFEFQSPLVGKFNLSNLLAAIATLFHL 321

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D++T I  L  F    GR ++   +  Q    ++D  Y   P S++   ++L    P 
Sbjct: 322 NIDLETVINKLPQFPGVPGRVEKIEVSEVQDISVIVD--YAHTPDSLE---NLLKATRPF 376

Query: 367 GEGRRIAVLG 376
             G+ I V G
Sbjct: 377 ISGKVICVFG 386


>gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
 gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
          Length = 481

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 155/371 (41%), Gaps = 36/371 (9%)

Query: 24  QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           + FV G I  DSR I   + F A+ G   DGH++I  AV  GA +V+     + ++    
Sbjct: 17  KDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMVIAEKKDI-TVADKD 75

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +    VD++   L  +A       + K  II ITG+ GKTT+  +L   L +  +    I
Sbjct: 76  VTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYILDSMLENTSRI-GTI 134

Query: 141 GS--YNNHIGVP------LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           G    +  I  P      L L +M        V++ I E+  SH  EI  +  L    + 
Sbjct: 135 GYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEVS-SHALEIGRVDMLEFDSV- 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E   +AK ++F  L       +N DDS+ E +   +     K+ 
Sbjct: 193 MFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAVNIDDSYGERIYNSN-----KSY 247

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S+   K++D + +  +  +      V  QG         +G +   N+L  +G++  L 
Sbjct: 248 KSYSIIKDSDLKGKIEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLYNLLGCIGVLLNLG 307

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISP 365
            D+   I+ +       GR +     +N+G  F  ++D ++  N        ++L  +  
Sbjct: 308 FDIRDIIERVKRVGYVPGRFE----LVNEGQDFRVIVDYAHTDNGLE-----NILETVRK 358

Query: 366 HGEGRRIAVLG 376
             E R I + G
Sbjct: 359 ITEKRVITIFG 369


>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
 gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
          Length = 491

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 42/374 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR + P   F  I G   DGH F   AV+ GA  ++    +      +SIPV 
Sbjct: 23  ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+  
Sbjct: 78  YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG          P  LTL     D     V   + E+    L + R   +     +AV
Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242
              ++  HL     +EE A+AK+ +F  L  +          LN DD     ++  + A 
Sbjct: 196 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG  + ADF+    +  S  S  +++    +  +    IG     N+L  +  
Sbjct: 255 ---HVITFGIKQQADFKASNIRITSHGSAFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++ AIK +      +GR +       Q F  ++D  Y   P  +   ++VL  
Sbjct: 312 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 364

Query: 363 ISPHGEGRRIAVLG 376
           I+   E R   V+G
Sbjct: 365 IAEFAEKRVFVVVG 378


>gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
          Length = 522

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 49/385 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT  ++T  +A + +  T+  IG      G    L R
Sbjct: 127 LAELLRLRQG---IAIAGTHGKTTTTSLITSVLAEAGMDPTFV-IGGRLEAAGSHAKLGR 182

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL HL +P +AV+T I   H+  +     ++  A  +  
Sbjct: 183 -------GEFIVVEADESDASFL-HL-QPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFV 233

Query: 215 EGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---- 269
           + L   G   L  DD+   E++ A +     K + ++G S+ A  +    +    Q    
Sbjct: 234 QHLPFYGMAVLCVDDAHVLEIMPAIT-----KPVTTYGLSETAQVRAADIRHSEGQMHFT 288

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + + V  + + +++V +  G H  QN L  + + + +     + ++AL+ F   + R +R
Sbjct: 289 ALIGVNGKTRKLKIVLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQR 348

Query: 330 Y-RCAL------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           Y    L        G FTLID+ Y  +P  M A I+      P   GRR+ VL       
Sbjct: 349 YGEIPLTDPETGRNGSFTLIDD-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRY 403

Query: 383 ELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMD 431
             ++    D  +VLS  ++   + V+ +G   +   D  +L RS+ V       + E +D
Sbjct: 404 TRTRDLFEDFVKVLSTADVLLLTEVYSAGEAPIIAADSKSLARSLRVLGKVEPIFVERVD 463

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456
            L   I S   D DVV+V  + S G
Sbjct: 464 ELEEAIHSIARDKDVVLVMGAGSVG 488


>gi|196249983|ref|ZP_03148678.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
 gi|196210497|gb|EDY05261.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
          Length = 434

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 141/357 (39%), Gaps = 60/357 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            LS+PV      LG          L SK T IA+TGS GKTTT  +L   +     T   
Sbjct: 82  QLSVPVIRYHRFLG---------ELASKFTSIAVTGSHGKTTTTGLLAHVMQGAHPTSYL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG      G P +         + +FE       E R  FL++   P  A+IT I   H 
Sbjct: 133 IGDGTGK-GEPGS--------KYFVFE-----ACEYRRHFLSYF--PDYAIITNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F+ I+++ SA  ++ + ++K   I    DD + + ++AK        I  +G  +  D
Sbjct: 177 DYFANIDDVFSAFQQMAQQVKK--GIVACGDDPYLQNIQAKV------PILFYGLGEEND 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           FQ R   + +E +  +V ++     S  +     G H   N L  + +      D  T  
Sbjct: 229 FQARNIVKTTEGTAFDVFVRNTFFASFTIPR--FGTHNVLNALAVIALCHYEGIDAGTIA 286

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------IS 364
             L  F   +G  +R+      G   LID+ Y  +P  + A +    Q            
Sbjct: 287 ARLQTF---QGVKRRF-SEKTVGRQVLIDD-YAHHPREIMATLEAARQKYPGREVVAIFQ 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           PH   R    L +  E   L Q+ ++ L ++       H  LS   +  L++ +PRS
Sbjct: 342 PHTYTRTQTFLSEFAE--SLQQADYVYLCDIFGSAREHHGKLS---IRDLQEKIPRS 393


>gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
 gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
          Length = 462

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 23/167 (13%)

Query: 95  LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           + ++ +A RLR    A  +A+TG+ GKTT   MLT  L++       +G    ++GVP+ 
Sbjct: 94  IGEVELAWRLRGDGAAPWLALTGTNGKTTAVRMLTSMLTAAGLKALAVG----NVGVPIV 149

Query: 153 LA-RMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            A R P DV   +   F+L  S           + P  A +  +AP H+     +EE A+
Sbjct: 150 EAVREPYDVLAVELSSFQLHWSSG---------IAPLAAAVLNVAPDHIDWHGSLEEYAA 200

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSK 254
           AKA+IF       T+  N DD     L     A G + + ++ G  +
Sbjct: 201 AKAKIF---RNAPTVIYNADDERCARLAEPYRAAGRRVVGFTLGAPR 244


>gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
 gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
          Length = 505

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 29/228 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I++DSR +     F A+ G   DG  FI  A++ GA  ++   D +A+ G +++   
Sbjct: 32  IDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIANEGDIALKDG 91

Query: 87  GVDDVLGALN-KL-AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                L  LN KL A+A R       K  + A+TG+ GKTT  ++L    + +      +
Sbjct: 92  VYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQWANLVGYKAGVM 151

Query: 141 GSYNNHIGVPL---------------TLARM-PVDVDFGIFELGMSHL--GEIRFLTHLV 182
           G+  N + V L               TLA++     DF   E+    L  G IR L H  
Sbjct: 152 GTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGLVQGRIRDL-HF- 209

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++ T ++  HL     ++  A AK  +F    ++G   +N DD+
Sbjct: 210 --KASIFTNLSRDHLDYHGNMQNYADAKKSLFTE-HQSGIAIINADDA 254


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 151/378 (39%), Gaps = 47/378 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G+ +DSR +   + F A+ G  +DG  FI  AV  GA  +V    +   + +L +P+
Sbjct: 21  MISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVAGFVEALQVPL 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             + ++        +A+R   + ++    I +TG+ GKTTT  ++   +    K+   IG
Sbjct: 81  VEMPEL--QQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKSCGVIG 138

Query: 142 SY-----------NNHIGVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
           +             N     ++L +   D  D G++   M  S    ++   + V    A
Sbjct: 139 TLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNGVGFETA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V T ++  HL     +E    AK  +F  EGL+      +N DD F   +       G++
Sbjct: 199 VFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKHA---LVNLDDEFGARV-CDVVEPGVQ 254

Query: 246 TI-YSFGKSK------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            I YS    +       ADF   +        W        + E V    G     N+  
Sbjct: 255 LITYSVSNPQADVFVEQADFSAGRVTGVLRTPW-------GTGEFVSPLPGDFNLANLAA 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  V++    +   +K +S   P  GR +     L  G   +ID  Y   P +++    
Sbjct: 308 AVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSLSNTL--GLQVIID--YAHTPDALE---Q 360

Query: 359 VLSQISPHGEGRRIAVLG 376
           VL+ +  H +G+ + V G
Sbjct: 361 VLTALRLHVDGQLVVVFG 378


>gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 488

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 103/258 (39%), Gaps = 34/258 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           +++DSR+      F AIKG   DG  +I  A+Q GA  V+   D       +     +P+
Sbjct: 21  MTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQVRYEQQVPL 80

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA     +   + T++ +TG+ GKTTT ++L      +  T A +G+ 
Sbjct: 81  IAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGHTSAVMGTI 140

Query: 144 NN---------------HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N                + +  +LA       DF   E+  SH G ++     V    A
Sbjct: 141 GNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVS-SH-GLVQHRVEAVHFSAA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AK  +F  L+    I    D      L     A+ +   
Sbjct: 199 VFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHHIIDADDPVGAAWLAEMPEAVAV--- 255

Query: 248 YSFGKSKNADFQLR--KW 263
                S NADF  R  KW
Sbjct: 256 -----SANADFAPRQAKW 268


>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
 gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 118/282 (41%), Gaps = 47/282 (16%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74
           G +  +VP      + +DSR +   + F A+ G   DG  FI +AV++GA  V V  D  
Sbjct: 18  GKAASLVP----GSLCLDSRQVKQGDIFIALVGTRADGRQFIANAVEQGAAAVFVEADKE 73

Query: 75  ---VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              V  IG   +PV  ++ +   L++LA    A    +  ++ ITG+ GKTT   +L   
Sbjct: 74  WQGVHWIG--EVPVIALEQLTARLSELAGRYYAHPSRELRLVGITGTNGKTTCSLLLAQL 131

Query: 130 LSSI--KKTYACIGSY-----NNHIGVPLT-----------LARMPVDVDFGIFEL--GM 169
           L+ +  +   A IG+      + H   P+                PV +   + +L  G 
Sbjct: 132 LAGVSGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVALQRILRQLRTGG 191

Query: 170 SHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEK 219
           +    I   +H ++           A+ T +   HL     +     AKAE+    GL+ 
Sbjct: 192 ASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKAKAELLFMPGLKH 251

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
                 N DD++ + L AK+ A G+  I  F   + AD  LR
Sbjct: 252 A---LFNMDDAWVKALAAKTPA-GVSAI-GFSLQEPADVYLR 288


>gi|138896357|ref|YP_001126810.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166224692|sp|A4IRW1|MURC_GEOTN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134267870|gb|ABO68065.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 434

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 141/357 (39%), Gaps = 60/357 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            LS+PV      LG          L SK T IA+TGS GKTTT  +L   +     T   
Sbjct: 82  QLSVPVIRYHRFLG---------ELASKFTSIAVTGSHGKTTTTGLLAHVMQGAHPTSYL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG      G P +         + +FE       E R  FL++   P  A+IT I   H 
Sbjct: 133 IGDGTGK-GEPGS--------KYFVFE-----ACEYRRHFLSYF--PDYAIITNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F+ I+++ SA  ++ + ++K   I    DD + + ++AK        I  +G  +  D
Sbjct: 177 DYFANIDDVFSAFQQMAQQVKK--GIVACGDDPYLQNIQAKV------PILFYGLGEEND 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           FQ R   + +E +  +V ++     S  +     G H   N L  + +      D  T  
Sbjct: 229 FQARNIVKTTEGTAFDVFVRNTFFASFTIPR--FGTHNVLNALAVIALCHYEGIDAGTIA 286

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------IS 364
             L  F   +G  +R+      G   LID+ Y  +P  + A +    Q            
Sbjct: 287 ARLQTF---QGVKRRF-TEKTVGRQVLIDD-YAHHPREIMATLEAARQKYPGREVVAIFQ 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           PH   R    L +  E   L Q+ ++ L ++       H  LS   +  L++ +PRS
Sbjct: 342 PHTYTRTQTFLSEFAE--SLQQADYVYLCDIFGSAREHHGKLS---IRDLQEKIPRS 393


>gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
 gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
          Length = 464

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 51/293 (17%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +IP+    D+L  L K         K +II + G+ GKTTT  M+ + L           
Sbjct: 87  NIPILHRSDLLADLTK--------EKKSII-VGGAHGKTTTTSMIALVLE---------- 127

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH----------LVRPHIAVITT 191
             NN I  P  L    ++ D G    G + LG   +L             + P+I VIT 
Sbjct: 128 --NNKID-PTILVGGELE-DIG----GNAKLGNGEYLVAEGDESDGSILKLDPYILVITN 179

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL  +  +E+I     ++ E + K G   LN D    E ++     +  K  Y++G
Sbjct: 180 IDNDHLDYYKSLEKIKDTFLKVIEKVPKGGFAVLNLD---CENVRDIIRKIKNKEYYTYG 236

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADV 310
            S NADF+          S  +V  + + +  V   + G H   N L  + +  IL  D 
Sbjct: 237 FS-NADFKADNIVLNLSGSEFDVYFRNEKLGRVKLRVPGKHNILNSLSAIAVSKILGLDF 295

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFT---LIDESYNANPASMKAAISVL 360
           +T  KAL  F     +G + R  L +G      L+ + Y  +P  +KA +  L
Sbjct: 296 ETTTKALERF-----QGVQRRIQL-KGIIEDDILVFDDYGHHPTEIKATLETL 342


>gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
 gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
          Length = 487

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 145/372 (38%), Gaps = 43/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ DSR +   + F AIKG   DGHD+I  AV +GA  ++  T  + S     I   
Sbjct: 24  IRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAIAIICET--IPSEIINGITYI 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML---------------TIA 129
            V+D   AL  +A        ++  ++ +TG+ GKTT   +L               T+ 
Sbjct: 82  QVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIATLLYNLFMAAGYETGLLSTVK 141

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +   K+ Y    +  + + +   L  M VD       + +S  G  +  T  +     + 
Sbjct: 142 IMVGKQQYKATHTTPDSLTINRYLREM-VDAGVSYCFMEVSSHGIHQKRTEGLTFAGGIF 200

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL      +E    K + F+ L KT    +N DD    ++   + A        
Sbjct: 201 TNLSHDHLDYHKDFKEYRDVKKKFFDQLSKTAFALVNADDKNGMVMLQNTSA-------- 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIVS 304
               K   + L+       Q  +E QLQG        E+    IG   A N+L       
Sbjct: 253 ----KKVTYALKSMADHKAQ-ILENQLQGLLLKLDGQELWVKLIGNFNAYNVLAIYATAE 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  +    ++ +S     +GR + +    N     ++D  Y   P ++K  +  ++ I 
Sbjct: 308 LLGLETIETLQLISTLESVDGRFQYFIS--NTKVTAVVD--YAHTPDALKNVLETINTIR 363

Query: 365 PHGEGRRIAVLG 376
             G  + I V+G
Sbjct: 364 T-GNEQLITVVG 374


>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
 gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
          Length = 450

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 21/221 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279
             + LN++    + L +K+ A    T+  F   +  D   L   + C      EV +   
Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTQEKVDGAYLEDGQLCFRG---EVVMAAS 270

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + V     G H  +N L  + +  +   D  T  + LS F
Sbjct: 271 EIGVP----GSHNVENALAAIAVAKLRGVDNQTIKETLSAF 307


>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 494

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 158/392 (40%), Gaps = 47/392 (11%)

Query: 9   DLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +LLQ ++   +IG   Q  V  I+  SR I P   FFAIKG H DGH FI   + +  G 
Sbjct: 5   ELLQGVEVLQTIGDTSQE-VGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQ-QGK 62

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTT 121
           V+V  D+  ++    +    V D   A+ ++A       + +LR    ++ +TG+ GKTT
Sbjct: 63  VLVVEDLPEALAE-GVTYVQVTDTSRAMGQIAAHFYGHPSEQLR----LVGVTGTNGKTT 117

Query: 122 TKEM---------LTIALSSIKKTYACIGSYNNHIGVP--LTLAR-MPVDVDFGIFELGM 169
              +           + L S    Y        H   P  LTL + +   V  G+    M
Sbjct: 118 IASLSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFM 177

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH   +  +  LV     V T +   HL       +    K + F+ L KT     N
Sbjct: 178 EVSSHGIALHRIEGLVFAG-GVFTNLTQDHLDFHETFAQYRDTKKKFFDHLPKTAFALTN 236

Query: 227 YDDS--FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +D    + L    +H    K+ Y+ G++  ADF+     Q  E ++  + L+  + EV 
Sbjct: 237 IEDKNGAYMLQNTSAH----KSTYALGRA--ADFK----GQLLESTFAGMTLRVGNHEVW 286

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A N+L       +L  +    +  +S      GR + +      G   ++D 
Sbjct: 287 TSLIGRFNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAGRFQYFVSP--SGVTVIVD- 343

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P +++  I  +  I    + R I V+G
Sbjct: 344 -YAHTPDALQNVIETILDIKDPSQ-RLITVVG 373


>gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Acidovorax ebreus TPSY]
 gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY]
          Length = 501

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 153/411 (37%), Gaps = 58/411 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T   L +A+       + Q     +  DSR I P + F A  G   DG   +  A
Sbjct: 1   MNALHTLTTLQEAVD-----WLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RSKATII 111
           V +GA   +V  + V        P     D + AL  L  A  +           +  ++
Sbjct: 56  VARGAAACLVECEGVE-------PFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVL 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLARM------PV 158
           A+TG+ GKT+T   L  AL+ + K         A +G+    +GVP  L         PV
Sbjct: 109 AVTGTNGKTSTAWWLADALNQLSKEELPALAGCALVGTLG--MGVPPALQTTGMTTPDPV 166

Query: 159 DVD--FGIF-ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            +   F  F E G        S +G         R H+A+ T     HL    G+     
Sbjct: 167 RLQRAFAQFAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQ 226

Query: 209 AKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           AK  +F+  GL  +    +N DD     L A+     +  ++S      A  Q +     
Sbjct: 227 AKRALFDWPGLRAS---VVNVDDPQGAALHAELQGSDLD-LWSVSLQGPARLQAKHIVHT 282

Query: 267 SEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                  V  +G   EV+    IG +   N+L  +  +  L   +  A++A +   P  G
Sbjct: 283 GAGLAFTV-AEGAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPG 341

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           R ++   A       L+   Y   P ++  A++ L  ++    GR   V G
Sbjct: 342 RMEQLAAAGQ----PLVAVDYAHTPDALHQALAALKPVAAQRGGRLWCVFG 388


>gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
          Length = 477

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 145/357 (40%), Gaps = 29/357 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++++S+ +     F AI G  +DG D+I  A++  A  V+  +   +   + ++P FG++
Sbjct: 15  LTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESANYSKNKAWNVPSFGIE 74

Query: 90  DVLGALN-KLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           +    LN K+A  A L          +I +TG+ GKT+    L    SS+ ++   IG+ 
Sbjct: 75  N----LNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIGTL 130

Query: 144 NNHIG--------VPLTLARMPVDVDF---GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
            +            P T+A   +  DF   GI    M   SH  +   + ++V   I V+
Sbjct: 131 GSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFD-IKVL 189

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +      K + F   E      LN DD   + L  +      K + +
Sbjct: 190 TNVTRDHLDYHKTLANYQKIKKQFFSDGE-CKNFILNIDDCIGQELLMEVD-WSEKNLTT 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +     AD   +       +   ++  + K+  +  +  G H   N+L  +G +      
Sbjct: 248 YAIDVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFS 307

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
           +D  IKA+ +     GR +  + +       ++D  Y   P ++K  +  L  IS +
Sbjct: 308 IDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLD--YAHTPDALKNVLQSLRAISDN 362


>gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
 gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
          Length = 493

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 155/380 (40%), Gaps = 49/380 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83
            V+ + +DSR + P   F A+ G   DG  FI  A+++GA   +     V + G++ I  
Sbjct: 24  LVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIID 83

Query: 84  --PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 84  DVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAVMG 143

Query: 142 SYNN---------------HIGVPLTLARMP-VDVDFGIFELGMSHL--GEIRFLTHLVR 183
           +  N                + +  TL+ +      +   E+    L  G ++ L+    
Sbjct: 144 TTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAA- 202

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHAL 242
               V T ++  HL     +EE A+AK  +F   +    I +N DD       ++ S+A+
Sbjct: 203 ---GVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCKRAI-INVDDEVGHQWASQLSNAI 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGK--SMEVVHHGIGYHMAQNM 296
            I          N +F+   W   +E S+ E    ++  GK  S E+    IG   A N+
Sbjct: 259 AISL------KPNTEFESAIW--ATEVSYAESGITIKFDGKFGSGELHAPLIGEFNATNL 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++    +  L  +    ++      P  GR + ++         ++D  Y   P +++ A
Sbjct: 311 MLAFATLLSLGIEKQALLETAGQLQPVLGRMELFQT--EDRAKVVVD--YAHTPDALEKA 366

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L     H EG+  A+ G
Sbjct: 367 LQAL---RVHCEGQLWAIFG 383


>gi|322385905|ref|ZP_08059547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
 gi|321270084|gb|EFX53002.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
          Length = 455

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 111 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQN----GLLSGNIGFPASQVAQDASET 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL      EE  +AK  I + +  +
Sbjct: 167 DTLVMELSSFQLMGIEAF----HPEIAVITNLMPTHLDYHGSFEEYVAAKWNIQKNMTAS 222

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  K+ A
Sbjct: 223 DYVVLNFNQDLAKELAKKTAA 243


>gi|162449936|ref|YP_001612303.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
 gi|189082502|sp|A9FI59|MURC_SORC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161160518|emb|CAN91823.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 27/296 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +L  PV G  ++L  L ++            +AI GS GKTTT  ++   L +       
Sbjct: 87  ALGTPVIGRAEMLAELMRVKYG---------VAIAGSHGKTTTTSLVATVLRA------- 130

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
               +  + V   +A +  +   G  +L ++   E       + P IAV+T I P HL +
Sbjct: 131 -AGLDPTVVVGGKMAALGTNARLGAGDLLVAEADESDGSFLRLTPTIAVVTNIDPEHLDH 189

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +   E I  A  E    +   G   L  D    + L  +      +   ++G S  +D+ 
Sbjct: 190 YGTHERIKDAFVEFAARVPFYGLAVLCLDHPHVQDLLPRIP----RRHVTYGVSPQSDYS 245

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            R  +    ++      +G+ +      + G H   N L T+ +   L   +D   +AL+
Sbjct: 246 ARGIQFRGLETSFNAYRRGEPLGGFTVKMPGAHNVLNCLATIAVADELEVPLDVTKQALA 305

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            F    G  +R+    + G  T+ID+ Y  +PA ++A I    +  P GE  R+ V
Sbjct: 306 TFG---GVARRFTVVGSIGGVTMIDD-YGHHPAEIRATIDAARRAFP-GEDHRVVV 356


>gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase
           [Aromatoleum aromaticum EbN1]
 gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase
           [Aromatoleum aromaticum EbN1]
          Length = 502

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 133/322 (41%), Gaps = 24/322 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI+ DSR + P E F A  G   DG  ++  A+++GA  V+ +      + +LS+P   
Sbjct: 21  HGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDSDGMRLEALSVPALP 80

Query: 88  VDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143
           V  +  LG      +     SK  +  +TG+ GKTT  + L  AL+ +      IG+   
Sbjct: 81  VSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIGTLGC 140

Query: 144 ---------NNHIGVPLTLARMP---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                     N     L + RM    V    G   + +S +G  +   + V   +AV T 
Sbjct: 141 GFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVAVFTN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YS 249
           +   HL   S +E  A AKA +F+ L   G   +N+DD F      +  A G+  I    
Sbjct: 201 LTRDHLDYHSSMESYAVAKARLFD-LPGIGAAVINFDDDFGLAQARRLAASGMPVIGYTR 259

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLMTLGIVS 304
           F +  +A    R     SEQ+           +  HH +   M       N++  +G + 
Sbjct: 260 FVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMAVIGSLL 319

Query: 305 ILTADVDTAIKALSVFHPKEGR 326
           +    +D  ++++S   P  GR
Sbjct: 320 VRDVPMDDIVRSVSRLTPPAGR 341


>gi|239999603|ref|ZP_04719527.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           35/02]
 gi|240014778|ref|ZP_04721691.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           DGI18]
 gi|240081137|ref|ZP_04725680.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113349|ref|ZP_04727839.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240116304|ref|ZP_04730366.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID18]
 gi|240118591|ref|ZP_04732653.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121301|ref|ZP_04734263.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124134|ref|ZP_04737090.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID332]
 gi|240126250|ref|ZP_04739136.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494318|ref|ZP_05107489.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268595414|ref|ZP_06129581.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597248|ref|ZP_06131415.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599423|ref|ZP_06133590.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268601971|ref|ZP_06136138.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268604302|ref|ZP_06138469.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268682759|ref|ZP_06149621.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268684831|ref|ZP_06151693.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043155|ref|ZP_06568878.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|293398491|ref|ZP_06642669.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
 gi|59718763|gb|AAW90168.1| putative UDP-N-acetylmuramate--alanine ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|193934636|gb|ACF30460.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513358|gb|EEH62703.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268548803|gb|EEZ44221.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551036|gb|EEZ46055.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583554|gb|EEZ48230.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268586102|gb|EEZ50778.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268588433|gb|EEZ53109.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268623043|gb|EEZ55443.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268625115|gb|EEZ57515.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012761|gb|EFE04744.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|291610962|gb|EFF40059.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
          Length = 506

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 425 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 484

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + LLE
Sbjct: 485 LNMGAGSIN--RVPSALLE 501


>gi|241760232|ref|ZP_04758328.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
 gi|241319343|gb|EER55808.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
          Length = 469

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 152/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVVDLPQMLLNVLQDGDVV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + L+E
Sbjct: 448 LNMGAGSIN--RVPSALVE 464


>gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 535

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 105/495 (21%), Positives = 201/495 (40%), Gaps = 70/495 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I+  S+ +     F  IKG   DGH++  HAV +GA +++V    +  +  L + V 
Sbjct: 29  INKITYHSKEVETDTLFVCIKGHQTDGHNYAKHAVSQGATVIIVE-QFIEDLDVLQLKVS 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              +VL  L+        +S  ++  +T + GKTT   M      + +     IG+    
Sbjct: 88  NSREVLAILSSNFFDQPSKS-MSLFGVTATNGKTTITYMTEEIFKAYQLKSGIIGTIVVK 146

Query: 147 IGVPLTLARM--PVDVDFGIF-----ELGMSHLG--------EIRFLTHLVRPHIAVITT 191
           I   + ++R+  P   D   +     +  ++H+         E++ + H     +   T 
Sbjct: 147 IDKEIEMSRLTTPESYDLQQYFAKMRDQEITHVSMEVSSSALELKRVYH-TDFDVVAFTN 205

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I+P H+      E    AKA +     K  T  LN D+     L  ++ A     + +FG
Sbjct: 206 ISPEHIQLHDSFEAYFDAKASLIRNASKMSTAILNLDEQLLIPLAEETAA----QVVTFG 261

Query: 252 -KSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGI-----GYHMAQNMLM 298
            ++K+    +   +  S     +V +Q       G+ +E     +     GYH   N L 
Sbjct: 262 IENKSGTITVSDIRFSSGMPSFKVTIQEPFNTLSGERIEPTSFDLELSIPGYHSIYNALT 321

Query: 299 TL--GIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  G+V+ +  + V   IK         G  +R++   ++ F  + D   N N  ++ +
Sbjct: 322 ALVTGLVNDIPLEYVQRGIKNF------RGVERRFQILYDKEFKVIDDLLLNQN--NIDS 373

Query: 356 AISVLSQISPHGEGRRIAVL------GDMCEMGE-LSQSFH-IDLAEVLSLYNISHV--- 404
            +  ++ +  + E   +  L          E+ E L++ FH + +++++     SHV   
Sbjct: 374 CMETINHLD-YNELHLVHALRGSNGPAHSTEIAESLAKWFHELKISKIILTTASSHVAKK 432

Query: 405 ------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--G 456
                  L+ F    LK     +I V +S  +D    F    L + DV+++  ++S   G
Sbjct: 433 DAVTDEELAAF----LKVMKQSNIEVTFSTELDDALRFGVERLNEEDVLLISGAHSMDQG 488

Query: 457 FYRLINLLLEEFPAI 471
             + + LL E +P +
Sbjct: 489 ARKTLELLKEIYPTV 503


>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
 gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
          Length = 489

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 41/360 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR +A    FF +KG   DGHDF   AV +GA  +V    +     S+ +PV  V 
Sbjct: 26  LEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPL-----SVDVPVVLVS 80

Query: 90  DVLGALNKLAVA--ARLRSKATII------------AITGSVGKTTTKEMLTIALSSIK- 134
           D   A+  LA A   R   +  +I            +I   + + T K+   I    IK 
Sbjct: 81  DSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTTTSIIEQIARKTGKKTGLIGTVHIKV 140

Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             ++Y    +    + +  T  +M VD  V+F   E+    L + R   H     +AV T
Sbjct: 141 GDRSYPAANTTPESLILQRTFKQM-VDEGVEFVAMEVSSHALHQGR--VHGCDYDVAVFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   HL     +EE  +AK  +F  L       +     LN+DD   +  K  + A   
Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I ++G  + +D    + +  +      +     S  V    +G     N+L       
Sbjct: 255 -PIVTYGMREKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNVYNILAAAAACL 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T   AL+   P  GR +       Q F  ++D  Y   P S++ A+  + Q++
Sbjct: 314 ASGFSLETIAAALADVEPVPGRFE--TVDEGQNFTIIVD--YAHTPDSLENALKTVRQLA 369


>gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
 gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
          Length = 488

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D+    +  +   +G + + ++G S +AD Q   + Q   Q    V+ +GK  ++++ + 
Sbjct: 234 DAVVREIMPR---IG-RHMITYGFSDDADVQALNFHQQGHQCRFTVRRKGKEDLDLLLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343
            G H   N L  + + +    D    I+AL+ F   +G G+R+    + A  +G   L+D
Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y+     + G    A   AL RSI +       +  + D L   +   L +GD++
Sbjct: 401 LLLEVYSAGEAPIPG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 LTQGAGNIG 465


>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 499

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 150/357 (42%), Gaps = 27/357 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  I  DSR  +    F A++G H DG D+I  A+  G  ++V       S+ S  +
Sbjct: 31  QCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESL-SDEV 89

Query: 84  PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKT 136
               V D   A+  LA     R   + TI+ +TG+ GKTTT  +       + + +   +
Sbjct: 90  AWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFS 149

Query: 137 YACI----GSYNNHIGVP--LTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
             CI      Y      P  L L R+  D VD G   L M  S    ++   + +   +A
Sbjct: 150 TVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALA 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     ++   +AK  +F+ L       +N DD    ++     A     +
Sbjct: 210 LFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSPDAYALVNADDRNGSVMVQNCAA----HL 265

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +++    +AD+  +   Q  + S +   L  + +E+    +G + A N+    G+  +L 
Sbjct: 266 HTYAMRSHADYMAQLLGQYVDGSTL--LLDNEEVEI--KLVGSYNAYNVTAVYGVARLLL 321

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            D+D ++    +   +   G+    A  +G+  ++D  Y   P +++  +  +S+++
Sbjct: 322 PDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELN 376


>gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum
           CFBP2957]
 gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CFBP2957]
          Length = 483

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  Q
Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  D D
Sbjct: 386 GTVDGLLLAEVYSAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
 gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
          Length = 449

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 23/222 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQG----GLLSGNIGFPASQVAQTATEK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P H+      E   +AK  + + + + 
Sbjct: 162 DVLVMELSSFQLMGIEAF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEK 217

Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             I LN++    + L  K K+  L   T+     +   D  L K+K        EV ++ 
Sbjct: 218 DVIVLNFNQDLAKELATKTKARVLPFSTVEKVDGAYLED-GLLKFKG-------EVVMRA 269

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             + V     G H  +N L T+ +  +   + +   + LS F
Sbjct: 270 DELGVP----GSHNVENALATIAVAKVRGVENEVIKETLSAF 307


>gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Haemophilus influenzae 10810]
          Length = 488

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 36/263 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++ +   +++    +PV  
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIRNVPVVK 83

Query: 88  VDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+  N
Sbjct: 84  YYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN 143

Query: 146 HIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITT 191
            +   +  A+      + +      F+   +    I   +H +  H         A+ T 
Sbjct: 144 GLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTN 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSF 250
           +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +      
Sbjct: 204 LTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV------ 256

Query: 251 GKSKNADFQLRKWKQCSEQSWME 273
             S NADF++          WM+
Sbjct: 257 --SMNADFKV------GSHQWMK 271


>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
          Length = 450

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKDLASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSSF 307


>gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
 gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
          Length = 473

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 115/274 (41%), Gaps = 20/274 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           + + A+  RL  +   +A+ G+ GK+TT  ML +AL    +  +  +G+    +G   T 
Sbjct: 102 IKRAALLGRLCDERVCLAVAGTHGKSTTSGMLALALVHAGEDPSFAVGAVVKELG---TN 158

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           AR       G F +  +   +  FL   + P +AV+T I   H   F   E +  A    
Sbjct: 159 ARP----GAGPFFVAEADEYDYSFL--WLHPDVAVVTNIEHDHPDLFPSRESVLEAFTRF 212

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSW 271
             G+   GT+ ++ DD     L A+   LG +   + +FG   NAD+ + + ++      
Sbjct: 213 VSGMRPDGTLVVSADDPGCRDLLAR---LGDRRPRVVTFGSDPNADWSIVRDEETGSGDL 269

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +     G+++ +     G+H   N L  L          +  +  L+ F    G G+R+ 
Sbjct: 270 VRAP-GGRTLRLRLAVPGWHNRLNALAALAAGEAAGVAPERLLPGLAAFG---GVGRRFE 325

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                   T++D+ Y  +P  ++A I    +  P
Sbjct: 326 VRGQARGVTVVDD-YAHHPTEIRATIEAARERYP 358


>gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 13/151 (8%)

Query: 82  SIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           ++PV + +D  +  + ++ VA R+ SKA II ITGS GKTTT  ++   L   + +    
Sbjct: 86  ALPVQWAIDRHIEIVTEVEVAYRM-SKAPIIGITGSNGKTTTTTLVGKMLEEAELSPVVA 144

Query: 141 GSYNNHIGVPLTLARMPV-DVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLS 198
           G    +IG  L+ A +   + D  + EL    L G   F     RPHIA +  +   HL 
Sbjct: 145 G----NIGRALSEAALDANETDRLVVELSSFQLKGTTDF-----RPHIACLLNVYETHLD 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +E+  ++KA++F    +  T  +N+DD
Sbjct: 196 YHGSMEDYVASKAKLFANQTQEDTAVINWDD 226


>gi|225077394|ref|ZP_03720593.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
 gi|224951278|gb|EEG32487.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
          Length = 469

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + L+E
Sbjct: 448 LNMGAGSIN--RVPSALVE 464


>gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha153]
          Length = 445

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-63q42]
 gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile ATCC 43255]
          Length = 484

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 101/269 (37%), Gaps = 45/269 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  DSR +     F  IKG   DGH +I  A++KGA   +V  D V   G   I   
Sbjct: 23  INNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEED-VEIKGCTFIK-- 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D    + K+A         K  +I +TG+ GKT+   +L   L+  K     IG+  
Sbjct: 80  -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138

Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
                                  +NN +        M V        L ++ + E  F  
Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 + + T + P HL     +E+   AK ++F   + T    +N DD   + +    
Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268
             + +   Y++G    ADF  R  K  S+
Sbjct: 246 KGINV-PCYTYGVDTKADFMARDIKSDSD 273


>gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter sp. K31]
 gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31]
          Length = 485

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 148/372 (39%), Gaps = 35/372 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+ G   DG  FI  A+  GA  ++   D    +  LS+PV 
Sbjct: 19  ITGVTADSRKVREGFLFAALPGSKADGRSFIDGAIASGAAAILAPDD----VEGLSVPVV 74

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
              D+  A    A        AT IA+TG+ GKT+         + +    A +G+    
Sbjct: 75  HAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAASMGTLGVV 134

Query: 145 -NHIGVP---LTLARM--PVDVDFG-----IFELGMSHLG--------EIRFLTHLVRPH 185
            +  G+P   LT   +  P   D       +  +G++HL         + R L   VR  
Sbjct: 135 VSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRLDG-VRLA 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGI 244
            A  T     HL     +    +AK  +FE L   G T  LN D   F    + +   G 
Sbjct: 194 AAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASAAVTSG- 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +TI S G       +L       +   +++  Q +  +V+    G   A N+L+  G+V 
Sbjct: 253 QTILSVGHEGQG-LKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAAGLVL 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D+D  I AL       GR +R      +G    +D  Y   P  ++   +VL+ + 
Sbjct: 312 ATGEDLDATIAALEHLEGAAGRLQRVGTGA-RGGEAYVD--YAHTPDGLE---TVLAALR 365

Query: 365 PHGEGRRIAVLG 376
           PH  G+ I V G
Sbjct: 366 PHTRGKLIVVFG 377


>gi|167825933|ref|ZP_02457404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
 gi|167847419|ref|ZP_02472927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 165

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 8/84 (9%)

Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368
            AIK  L  F P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P   
Sbjct: 3   AAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 59

Query: 369 GRRIAVLGDMCEMGELSQSFHIDL 392
             R+ V+G+M E+G+   +FH ++
Sbjct: 60  --RVLVIGEMGEVGDEGPAFHREI 81


>gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
 gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
          Length = 488

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D+    +  +   +G + + ++G S +AD Q   + Q   Q    V+ +GK  ++++ + 
Sbjct: 234 DAVVREIMPR---IG-RHMITYGFSDDADVQALNFHQQGHQCRFTVRRKGKEDLDLLLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343
            G H   N L  + + +    D    I+AL+ F   +G G+R+    + A  +G   L+D
Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L +Y+     + G    A   AL RSI +       +  + D L   +   L +GD++
Sbjct: 401 LLLEVYSAGEAPIPG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 457 LTQGAGNIG 465


>gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M0579]
 gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240149]
 gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis NZ-05/33]
          Length = 445

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|240128804|ref|ZP_04741465.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268687186|ref|ZP_06154048.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627470|gb|EEZ59870.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 506

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPD---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 425 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 484

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + LLE
Sbjct: 485 LNMGAGSIN--RVPSALLE 501


>gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
 gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
          Length = 488

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 155/377 (41%), Gaps = 46/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           V G++ DSR + P   F A+ G   DG  F   A   GA  +V        + A +  L+
Sbjct: 23  VTGLTADSRRVRPGFVFVAVPGTTMDGRSFATAAAAAGAVAMVTEGPRPEALPAEVAYLA 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P     D   AL   A     R   TI+A+TG+ GK++  + +   L+ + +  A +G+
Sbjct: 83  VP-----DARRALALAAARLFARQPETIVAVTGTSGKSSVADFVRQVLARLGRRSASLGT 137

Query: 143 YN---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184
                            + + +  TL R+  D   GI +L M   SH  E R L   VR 
Sbjct: 138 LGVVTGEGAAYGSLTTPDPVTLHETLDRLAGD---GITDLAMEASSHGIEQRRLDG-VRL 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T +   HL      E   +AK  +FE  L    T  +N D    + + A   A G
Sbjct: 194 TAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLPDAATAIVNADGPMADRVAASVRARG 253

Query: 244 IKTIYS--FGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  + +   G++ + +  + R + Q      + ++ +G++ +V    +G    +N L+  
Sbjct: 254 LPLVTTGLSGETLRLSAVETRGFAQA-----LTIKAEGRAYQVDLPLVGGFQVENALVAA 308

Query: 301 GIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           G+V    A      + ++   H     G+  R A + G   ++D  Y   P ++     V
Sbjct: 309 GLVLATPAGRGRLPEVVAALGHLAGVPGRLERVATHNGALCVVD--YAHKPEALA---GV 363

Query: 360 LSQISPHGEGRRIAVLG 376
           L  + P   GR + V+G
Sbjct: 364 LQALRPFTTGRLVCVMG 380


>gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
 gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
          Length = 514

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 159/386 (41%), Gaps = 55/386 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV-----VVNTDMVASIGSL 81
           +  +  DSR ++  + F A+ G   +G DF   A+++GA  V     +    ++ S  + 
Sbjct: 30  IRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGAVAVLSEQSIEEPSLLESASAH 89

Query: 82  SIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + +  +  +   +++L+  A        TI  +TG+ GKT+    L  AL+++    A 
Sbjct: 90  QVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDGKTSVAHFLAQALTALNPPVAL 149

Query: 140 IGSYNN------HIGVPLTLARMPVDVDFGIF-ELGMSHL-------GEIRFLTHLVRPH 185
           +G+  +      H     T   + +   F  F E G+ H+       G  +   + V   
Sbjct: 150 VGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRHVAMEVSSHGLDQGRVNGVAFD 209

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           +AV+T +   HL     + + A AK ++F   GL+ +    LN DD F  +L     AL 
Sbjct: 210 LAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKAS---VLNCDDDFGCML-----ALE 261

Query: 244 IK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYH 291
           ++    +Y +G   +   Q+    +      +++ + G   +V   G         +G  
Sbjct: 262 LEERLPVYGYGFDGDMSPQMTARVRGHN---LQLTVDGLRFDVSSGGQRYTVDVALMGRF 318

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANP 350
            A N+L  +  +  L   +  A++ +S   P  G   R  C  L  G   ++D  Y   P
Sbjct: 319 NASNVLAVITSLLALGVPLPEAVEVVSRLQPVPG---RMECLKLPNGAVAVVD--YAHTP 373

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++  +S L +   H  GR   V G
Sbjct: 374 QALEQTLSSLRE---HSGGRLFTVFG 396


>gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2846]
          Length = 488

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 36/263 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++ +   +++    +PV  
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIRNVPVVK 83

Query: 88  VDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +   L+ LA V     SK  T++ +TG+ GKTT  ++L      +    A +G+  N
Sbjct: 84  YYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN 143

Query: 146 HIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITT 191
            +   +  A+      + +      F+   +    I   +H +  H         A+ T 
Sbjct: 144 GLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTN 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSF 250
           +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +      
Sbjct: 204 LTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV------ 256

Query: 251 GKSKNADFQLRKWKQCSEQSWME 273
             S NADF++          WM+
Sbjct: 257 --SMNADFKV------GSHQWMK 271


>gi|171778709|ref|ZP_02919805.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282666|gb|EDT48090.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 451

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A + S A II ITGS GKTTT  M+   L++  K+    G  + +IG P + +A+   D 
Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PH+AVIT + P H+    G EE  +AK  I + +   
Sbjct: 162 DTLVMELSSFQL----MGTDTFHPHMAVITNLMPTHIDYHGGFEEYVAAKWNIQKNMTAE 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  K+ A
Sbjct: 218 DYLVLNFNQDLAKELAQKTAA 238


>gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
 gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
          Length = 492

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 145/359 (40%), Gaps = 41/359 (11%)

Query: 27  VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSI 83
           +NG +++DSR +   + F A+ G   DG D+I  A+ +GA LV+   +   +++    S 
Sbjct: 26  MNGHMTLDSRKVGEGDIFVALPGVQRDGRDYIKQALAQGAALVLAEANDFNISTDADSSS 85

Query: 84  PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V D+   L  LA         +  ++A+TG+ GKT+  E +   L ++     C+G
Sbjct: 86  RIMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVG 145

Query: 142 SYNNHI-GVPLTLARMPVDV--------DF---GIFELGMS------HLGEIRFLTHLVR 183
           +  + +   P        DV        D+   GI  + +       H G +  L+    
Sbjct: 146 TLGSRLEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSL--- 202

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHA 241
            H  V T +   HL       + A+AK  +F        IF N DD      L  A + A
Sbjct: 203 -HTGVFTNLTRDHLDYHGNAADYAAAKLSLFNTFNLKRAIF-NADDPVASQVLAVAGASA 260

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +GI      G   +    +R  +       +E+Q    + E+     G   A N++  + 
Sbjct: 261 IGITL---EGAEAHVQVAIRSMRPM----LLEIQSPWGAAEINLALSGRFNAFNVVAAIV 313

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V+ L  D      A     P  GR +R   + N+    ++D  Y   P ++++A+  L
Sbjct: 314 AVTGLGHDFHRVCAAAESLKPVPGRMERILMSGNR--LAVVD--YAHTPDALESALQTL 368


>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
 gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
          Length = 442

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 31/300 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LVV N  +  +   +   +     V+G +   A AA       +IAITGS GK+T  +
Sbjct: 69  ADLVVTNPGIALATPQIQTVLARGVAVVGDIELFAWAA----DKPVIAITGSNGKSTVTD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            LT  +++       IG    +IGVP  L  +  +V+  + EL    L E     HLV  
Sbjct: 125 -LTGVMANACGVKCAIGG---NIGVP-ALDLLEQEVELYVLELSSFQL-ETTSSLHLV-- 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A    ++  H+  + G+++   AK  IF+   K G +  N DD   +     SH   +
Sbjct: 177 -AAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH-AKHGVV--NRDDR--QTYPETSHGQQL 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG S + +F +   +    +SW+    Q          +G H   N+L+ L +++
Sbjct: 231 LALVTFG-SDDKEFGVMSHQ---GESWLSYNQQPILASRELKLVGQHNVANVLVVLALLT 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLS 361
               D    + AL  +      G  +RC   A N+G    +++S   N AS +AA+S L+
Sbjct: 287 CAGIDYRKGLSALKSY-----TGLTHRCQVVADNRG-IKWVNDSKATNLASTQAALSGLN 340


>gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
          Length = 526

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 29/257 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           + GI++ S        F AI G    G  F   A++ GA +V+ + D  A      L +P
Sbjct: 45  LRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVP 104

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D    + +L   + A   ++ T +A+TG+ GKTTT  ++  A++S     +  G+
Sbjct: 105 VIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGT 164

Query: 143 YNNHIGVPL------TLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPH------- 185
              H+G P+      T A  PV   F      +E G    G I    H +  H       
Sbjct: 165 VETHVG-PISFEAVRTTAEAPVVARFLAATEQYECGA---GVIELSAHALSLHRVDGIVF 220

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL  +  +E    AKA +F   E +    +  DD +   L A+   + +
Sbjct: 221 DVAAFTNLQHDHLDYYGDMENYFQAKALLFTP-EHSRHGVVCVDDEWGRRL-AQQATVPV 278

Query: 245 KTIYSFGKSKNADFQLR 261
            T+ +  + + AD+Q+R
Sbjct: 279 TTVSALTE-EAADWQVR 294


>gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
 gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
          Length = 493

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F++ +++DSR+I   + F A+ G   DG  FI  A+ +GA  V+V+TD +   G +  
Sbjct: 18  QTFLD-LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGAIAVLVHTDSIEEQGKVIA 76

Query: 84  PVFGVDDVLGALNK-LAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              GV      L K ++  A +R          I+ ITG+ GKT+T ++    ++ ++  
Sbjct: 77  TEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGK 136

Query: 137 YACIGSYNNHI-----------GVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLV 182
            A +G+  N +              +TL R   +  D G+    M  S  G ++     V
Sbjct: 137 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLYEFADKGVNTCAMEVSSHGLVQGRVDAV 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +AV T +   HL     +E  A+AK  +F 
Sbjct: 197 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR 229


>gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
 gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
          Length = 468

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 158/393 (40%), Gaps = 49/393 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+    S+PV    ++L         ARL +    IA+ G+ GKTTT  ++ + +
Sbjct: 81  NPEVVAAR-QRSLPVVKRGELL---------ARLFNARRGIAVAGAHGKTTTSALVALVM 130

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                +  A IG Y             P   DF + E   S   +  FL   ++P IA+I
Sbjct: 131 KEGGLEPAAVIGGYVRE----FASNAYPGRGDFLVAEADES---DGSFL--WLKPEIALI 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL ++  ++ I +A  +  + +   G   L  +D     L A S     + + +
Sbjct: 182 TNIEADHLEHYGSLDRIVAAFKDFIDQIRPGGKAILCAEDPRVAGLVACSP----RQVIT 237

Query: 250 FGKSKNADF-----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +G +   D+     Q+      +   + E  L   +M V     G H   N L  +    
Sbjct: 238 YGLNGRPDYRATGVQMAGMGGRAAIYYREQYLGQLTMAVP----GRHNILNALGAIAAGH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        +AL  F    G G+R+    + G   ++D+ Y  +P  ++A ++  SQ+ 
Sbjct: 294 QLGIPFAVMARALGQF---RGVGRRFEILWDDGTTRVVDD-YAHHPTEIRATLAAASQV- 348

Query: 365 PHGEGRRIAVLGDMCEM------GELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             G  R +AV              E  Q+F   D+  V  +Y      L G +   +   
Sbjct: 349 --GAKRVVAVFQPHRYTRTHHLYREFGQAFRQADVVIVNDIYPAGEAPLPGVNSQLITGE 406

Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
           +  S H  V+Y  T++    F++ S   GD+V+
Sbjct: 407 IKGSGHQQVYYLPTLEETLAFLKKSCRPGDLVL 439


>gi|303242546|ref|ZP_07329024.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302589908|gb|EFL59678.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 464

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 33/263 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMP--VDVDFGI 164
           A I A+TGS GKTTT  ++   L++  + Y C +G    +IG PL L+++    + D  +
Sbjct: 117 AQIFAVTGSDGKTTTTTLIYNMLTA--QGYNCWLGG---NIGTPL-LSKIDEIKETDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  + P++AV+T +AP HL     ++E   AK  IF    K+  + 
Sbjct: 171 LELSSFQLH-----TMTLSPNVAVVTNLAPNHLDMHKSMDEYIEAKKNIFLHQSKSDKVI 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           LN+D+   ++ +  S  +    +Y F +    D              M V   GK + E+
Sbjct: 226 LNFDN---DITREFSKDVKGNVVY-FSRVNKID------SGAKMDGEMLVYSDGKDIREI 275

Query: 284 VHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           V+ G     G H  +N L  +  V I   ++DT  +  + F   E R +  R      F+
Sbjct: 276 VNSGDIVIPGVHNIENYLAAIAAV-IDYVEIDTIKRVATTFKGVEHRIELVRELDGIKFY 334

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
              ++S  ++P+   A ++   Q
Sbjct: 335 ---NDSIASSPSRTIAGLNSFKQ 354


>gi|237743960|ref|ZP_04574441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
 gi|229432991|gb|EEO43203.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
          Length = 454

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 23/253 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIF 165
           K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+   +   D+DF   
Sbjct: 112 KTKIIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFISL 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +      
Sbjct: 168 ELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E    ++  +  K I S  K K AD  +   K C  +  + + +   S++   
Sbjct: 224 NIDDVEIE---KRAKQVKAKRI-SVSKFKKADIFVENDKICHGKDSI-IDVDKLSLK--- 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +    IL  D +   + L +  P E R + +    N G    I++S
Sbjct: 276 ---GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF---FNYGKLKFINDS 329

Query: 346 YNANPASMKAAIS 358
              N  S K AI 
Sbjct: 330 KATNVDSTKFAIE 342


>gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
          Length = 488

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 40/303 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIAL 130
           ++A      IP++G         ++ +A RLR   + A  +A+TG+ GKTTT +ML   L
Sbjct: 104 LLAQARERGIPIWG---------EVELAWRLRDPDNAAPWLAVTGTNGKTTTVQMLDNIL 154

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +       +G    ++G+P+  A M  +  + +F + +S   ++ + + +     AV+ 
Sbjct: 155 RTAGLRSVAVG----NVGLPIVEAVMDPE-PYDVFAVELSSF-QLHYTSSMA-AEAAVVL 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKT--------GTIFLNYDDSFFELLKAKSHAL 242
            IA  HL  +  +EE A+ K  ++EG+E+          T+ L  +    E  +A    L
Sbjct: 208 NIAEDHLDWYPSMEEYAADKGRVYEGVERACVYNVADEATMHLVEEADVVEGARAIGFTL 267

Query: 243 GIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           G   +   G  ++   D    + +Q S     ++     S          H  QN L   
Sbjct: 268 GTPAVGQVGVVEDILVDRAFIEERQTSAAELCQISDLASSAP--------HYVQNALAAA 319

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +              L  F P    G R       G  T +D+S   NP + +A++   
Sbjct: 320 ALARAHGVSQAAVRDGLKSFRPD---GHRIEVVAEVGGVTWVDDSKATNPHAAQASLQAY 376

Query: 361 SQI 363
             +
Sbjct: 377 DPV 379


>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 496

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 152/390 (38%), Gaps = 65/390 (16%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  I  DSR       F  I G H D H FI    + GA  V+          S+ +
Sbjct: 22  QTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGARAVLTER------ASVDV 75

Query: 84  P----VFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           P    V  V ++  AL+ +        AR+     ++ ITG+ GKTTT  ++   L    
Sbjct: 76  PAGVAVLYVLNLEKALDTIVPFFYDYPARVMR---VVGITGTNGKTTTSYLVRAILRHAG 132

Query: 135 KTYACIGSYNNHIG---VPLT------------LARMPVD-VDFGIFE-----LGMSHLG 173
                IG+    I    +P +            LA M    +D  + E     L +  + 
Sbjct: 133 HRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEVSSHALALGRVA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKTGTIFLNYD 228
            I F T       AV T +   HL     +E  A AKA +FE     G ++  T  LN D
Sbjct: 193 GIEFDT-------AVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTAVLNAD 245

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  E ++A +       I ++G    AD   +  +   +   + +   GK +  +H GI
Sbjct: 246 DAASETMRAYTRC----PIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFHLHTGI 301

Query: 289 -GYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            G     N+L  +G  ++   A  D A  AL+ F    GR +  R    Q F  ++D  Y
Sbjct: 302 TGLFNVHNVLAAVGASLAEQVAATDIA-AALTAFTGVPGRFELVR--EGQDFAVIVD--Y 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P  M+  +     ++   +G  IAV G
Sbjct: 357 AHTPDGMENVLRTARAVT---KGHIIAVFG 383


>gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
 gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
          Length = 488

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 36/257 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85
           +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++      V  IG  ++PV
Sbjct: 24  LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVDFIG--NVPV 81

Query: 86  FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                +   L+ LA V     SK  T++  TG+ GKTT  ++L      +    A +G+ 
Sbjct: 82  VKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKTTISQLLAQWAELLGHRAAVMGTI 141

Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189
            N +   +  A+      + +      F+   +    I   +H +  H         A+ 
Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248
           T +   HL     +E  A+AK  +F  L+ T    +N DD   ++ L     A+ +    
Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256

Query: 249 SFGKSKNADFQL--RKW 263
               S NADF++   +W
Sbjct: 257 ----SMNADFKVGSHQW 269


>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
 gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
          Length = 499

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 149/354 (42%), Gaps = 27/354 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR  +    F A++G H DG D+I  A+  G  ++V       S+ S  +   
Sbjct: 34  VTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESL-SDEVAWL 92

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYAC 139
            V D   A+  LA     R   + TI+ +TG+ GKTTT  +       + + +   +  C
Sbjct: 93  TVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVC 152

Query: 140 IG----SYNNHIGVP--LTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAVIT 190
           I      Y      P  L L R+  D VD G   L M  S    ++   + +   +A+ T
Sbjct: 153 IRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFT 212

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     ++   +AK  +F+ L       +N DD    ++     A     ++++
Sbjct: 213 NLTRDHLDYHGTMQAYIAAKKLLFDNLSPDAYALVNADDRNGSVMVQNCAA----HLHTY 268

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               +AD+  +   Q  + S +   L  + +E+    +G + A N+    G+  +L  D+
Sbjct: 269 AMRSHADYMSQLLGQYVDGSTL--LLDNEEVEI--KLVGSYNAYNVTAVYGVARLLLPDL 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           D ++    +   +   G+    A  +G+  ++D  Y   P +++  +  +S+++
Sbjct: 325 DKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELN 376


>gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
 gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 154/393 (39%), Gaps = 43/393 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMVASI 78
           V G+++DSR + P   F A+ G    G +FI +A+++GAG ++ +         ++V + 
Sbjct: 18  VTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAAELVGAD 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---- 134
            +L +     +D   AL   A         T++A+TG+ GKT+          ++     
Sbjct: 78  AALVV----AEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHKAI 133

Query: 135 --KTYACIGSYNNHIG----VPLTLARMPVDVDFGIFEL----GMSHLGEIRFLTHLVRP 184
              T    G Y   +      P+TL R+  +              SH  + R L   VR 
Sbjct: 134 SLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDG-VRL 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
                T  +  HL      +E  +AKA +F+  LE+     +N DD     +   +   G
Sbjct: 193 KAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGERG 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +K + + GK + AD ++   +  +    +     G++  V    IG   A+N+L   G+ 
Sbjct: 253 LK-LTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGLA 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                +    I+ L       GR          G    +D  Y+  P ++    S L  +
Sbjct: 312 IAAGDEAPRVIETLPGLTTVRGR-MELAAVRENGAAVFVD--YSHKPGALA---SALQSL 365

Query: 364 SPHGEGRRIAVLGDMCE--------MGELSQSF 388
            PH  GR + V G   +        MGE ++ F
Sbjct: 366 RPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQF 398


>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
          Length = 485

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 31/326 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++    
Sbjct: 22  DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEM---KHNVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IGTIEY 136

Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            IG          P +L  + +        +++ + E+  SH  EI  +  +V    A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD + + L      +    I S
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRL-YDEFIVDNSEIIS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G   + D +        +  +++++ + +  +V    +G     N L  +GI   +   
Sbjct: 254 YGID-SGDLE----GDYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALN 335
           ++  +K +S      GR +   C  N
Sbjct: 309 MEEILKRVSTIKAAPGRFEALDCGQN 334


>gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
 gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
          Length = 485

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 137/363 (37%), Gaps = 53/363 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R +     F  IKG   DGH F + A ++GA  ++    +      + IPV  V +  
Sbjct: 28  DNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEKPV-----DVDIPVIIVRNTK 82

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-- 148
            A+  LA     +   K  ++ ITG+ GKTTT  ++        +T   IG+    IG  
Sbjct: 83  RAMALLADRFYGQPSRKFRLVGITGTNGKTTTSHIIEKIYRDAGRTTGLIGTMYMKIGDE 142

Query: 149 -------VP--LTL--------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                   P  LTL        AR   D    + E+    L E R   H     IAV T 
Sbjct: 143 TLETKNTTPDSLTLQKTFHEMNARGVTDC---VMEVSSHSLVEGR--VHGCDYDIAVFTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSF---FELLKAKSHAL 242
           +   HL     + E   AK+ +F  L      +K     LN DD+    FE + A     
Sbjct: 198 LTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAASKEFEQVTAVP--- 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++G   +ADF        +  +   +    +  EV     G     NML  +  
Sbjct: 255 ----VITYGIDHDADFMAENIDMHARGTTFTLVTPFEKREVRLKLAGKFSVYNMLAAIAA 310

Query: 303 VSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +    +D+ IK        EG RG+       Q F  ++D  Y   P S++  +  + 
Sbjct: 311 GVVSGVPLDSVIKTAEAM---EGVRGRFELVNGGQDFSVIVD--YAHTPDSLENVLKTIR 365

Query: 362 QIS 364
           Q +
Sbjct: 366 QFA 368


>gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 148/386 (38%), Gaps = 35/386 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q +   ++     G V+G+  DSR + P   FFA++G   DGH FI  A+ +GA  VV
Sbjct: 6   LCQILDPSAVSGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVV 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTI 128
           + +      G   I V   D         A      SK   ++ ITG+ GKTT   ++  
Sbjct: 66  MESPHTLPTGVTGILV--KDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVES 123

Query: 129 ALSSIKKTYACIGSYNNHI---------GVPLTLARMPVDVDFG-------IFELGMSHL 172
            L +     A +G+ +              P ++  M    DF        + E+  SH 
Sbjct: 124 ILLAAGYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVS-SHS 182

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDS 230
            E R +   V   + V T + P HL     +E    AK  +F GL       +  N DDS
Sbjct: 183 LEQRRVDG-VWFDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDS 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   L A      +  +   G +   D                ++    +  +    +G 
Sbjct: 242 WGARLGAM-----LPAVIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQSPLVGD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +  QN+L   G+ + L     T  KAL+     +  G+    A  +G   L+D ++  + 
Sbjct: 297 YNLQNLLCAAGVGAALDMVPATIAKALA--QAPQVPGRLESIANERGALVLVDYAHTGD- 353

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++  +  L Q+ P    R + V G
Sbjct: 354 -ALENVLVTLRQLQPR---RLLCVFG 375


>gi|78187954|ref|YP_375997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium luteolum
           DSM 273]
 gi|122063253|sp|Q3B127|MURD_PELLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78167856|gb|ABB24954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           luteolum DSM 273]
          Length = 460

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 44/241 (18%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLT--LARMPVDV 160
           +A I  ITG+ GKTTT  ++     ++ +    +G Y      +IGVP +  +  M  + 
Sbjct: 107 RARIAGITGTDGKTTTATLVQRMAEAVGR----LGGYRAYGVGNIGVPFSSKVEEME-ER 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D  + EL    L          RP  A+IT I P HL  + G I   A AK  I   L  
Sbjct: 162 DIAVVELSSYQLERCSSF----RPEAALITNITPDHLDRYGGDIMRYADAKYRIAMNLGS 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +GT+  N DD    +L+A+    G++       T    G   ++   L       E  W+
Sbjct: 218 SGTLVYNADDP---ILRARFSVGGLQFSTVPFSTAGPVGGDPSSGIYL-------EDGWV 267

Query: 273 EVQLQGKSMEVVHHG-------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              L+     ++H          G H   N+L  +G+   L  D    ++AL  F   E 
Sbjct: 268 HAGLR----RLIHTSEFQKGSFRGNHNNSNVLGAIGLARALRLDEKAVLQALREFPGVEH 323

Query: 326 R 326
           R
Sbjct: 324 R 324


>gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
 gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
          Length = 488

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 18/256 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +LT+AL    +  ++A  G    H     T A    D D  + E  
Sbjct: 131 VAVAGANGKTTTTSLLTVALQGCGLDPSFAVGGELARH----GTNAHRGAD-DIFVVEAD 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  F+ +  RP +A++T + P HL  +     + +A   +   ++  G +    D
Sbjct: 186 ES---DGSFIVY--RPEVAIVTNVQPDHLDFYGSFAVVQAAYEALVATIQPGGLLVTCAD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    L  ++ A G + + ++G   +AD  L  ++Q    S   V  +G    +     
Sbjct: 241 DAGSRALAERATARGTR-VLTYGFRPDADVALGDYRQDGLTSGATVLDEGVRRLLTLGIP 299

Query: 289 GYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H A N +      V  L    D  +  L+ F    G  +R+          ++D+ Y 
Sbjct: 300 GRHNALNAVAAYTAAVHGLGQQPDRVLAGLASF---TGTRRRFEPKGEAAGVVVVDD-YA 355

Query: 348 ANPASMKAAISVLSQI 363
            N   + A +   SQ+
Sbjct: 356 HNAGKVAAVVETASQL 371


>gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 481

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 149/374 (39%), Gaps = 43/374 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+  S ++     F A+ G   DG  ++  A+Q+GA  +V+      ++    + + 
Sbjct: 22  VTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRGASAIVIGKGKGVTV-PAGVALI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            VD+   AL K+A     R     +A+TG+ GKT+  +      +S+ +  A +G+    
Sbjct: 81  EVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVADFTRQIFTSLGRKAASVGTIGIV 140

Query: 145 -------------NHIGVPLTLARMPVDVDFGI----FELGMSHLGEIRFLTHLVRPHIA 187
                        + + +  TLA +    D G+    FE     L + R     V    A
Sbjct: 141 KPDGAVYGSLTTPDPVTLHTTLASL---ADEGVTHLAFEASSHGLDQNRL--DGVELSAA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+      E   +AK  +F E L+      +N D +    + A + A G++ 
Sbjct: 196 AFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDGARSADVAAAAKARGLR- 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+S +   +     +   Q  + +   G+S +V    +G +  +N L+  G+    
Sbjct: 255 VMTVGQSGDT-LKRTSLTRDGFQQRIGILFDGRSFDVRLPLVGAYQVENALVAAGLAIAT 313

Query: 307 TADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
               D  + AL       GR    G+R       G   ++D  Y   P ++ AA   L  
Sbjct: 314 GEKADAVLAALESLKGVPGRLEIIGER------NGGLAVVD--YAHKPEALAAA---LDA 362

Query: 363 ISPHGEGRRIAVLG 376
             P   GR I+V G
Sbjct: 363 CRPFVTGRLISVFG 376


>gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 497

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 135/313 (43%), Gaps = 20/313 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+AITG+ GKTTTKEM+   LS+ ++  A   S N+       L  +  D +  +FE  +
Sbjct: 138 IVAITGTSGKTTTKEMIKHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAV 197

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              G++       +P I +IT I   HL+    +E    AK E+ + ++  GT+ +N +D
Sbjct: 198 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAED 257

Query: 230 ---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 ++ K     L +      G   +  F+    +   +    ++    K  ++   
Sbjct: 258 MNTKKLDISKFNGRVLKV------GIHDSCHFRASHIQYYQKGMNFKLHHIRKIYDIFVP 311

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDE 344
           G G H   N L  +     +   +  A   L  F     R  + +  L +G     L+D+
Sbjct: 312 GFGQHQVYNALAAIAAAYEIGVPIPVAANQLQSF-----RQLKKQLQLFEGINHSMLLDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++    S++A + VL+ +   GEG ++IAV+G + ++G      H    E++    +  
Sbjct: 367 TWSITTTSLEAGLKVLNDL---GEGKKKIAVIGTITDLGSWGYIIHEQAGELIHRIGVDV 423

Query: 404 VWLSGFHVLALKD 416
           +   G H   + D
Sbjct: 424 LITIGEHARIMAD 436


>gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 23/222 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQG----GLLSGNIGFPASQVAQTATEK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L  I        P IAVIT + P H+      E   +AK  + + + + 
Sbjct: 162 EVLVMELSSFQLMGIEAF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEK 217

Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             I LN++    + L  K K+  L   TI     +   D  L K+K        EV ++ 
Sbjct: 218 DVIVLNFNQDLAKELATKTKARVLPFSTIEKVDGAYLED-GLLKFKG-------EVVMRA 269

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             + V     G H  +N L T+ +  + + + +   + LS F
Sbjct: 270 DELGVP----GSHNVENALATIAVAKVRSVENEVIKETLSAF 307


>gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 131

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR++ P + F A+KG  +D HDF+     +GA   +    +  +   L++P+    
Sbjct: 29  VSTDSRTVGPGDLFVALKGERFDAHDFLGDVAARGAAAAL----VAHAPAGLAMPLIVGG 84

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +   AL  LA   R R    ++A+TGS GKTT KEM+
Sbjct: 85  ETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMI 121


>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
 gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
          Length = 477

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 57/377 (15%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--- 73
           H +GI P    +    DSR +     F A  G   DG  +I  A+  GAG V+   +   
Sbjct: 8   HDLGIRPSSLTS----DSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEGFS 63

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             A + ++++PV  +    G +          S   ++ +TG+ GKT+  + LT  L+S+
Sbjct: 64  WPADLQAVNLPVKDLRKQAGEIAD-EFYGHPSSALWMVGVTGTNGKTSCTQWLTHCLNSL 122

Query: 134 KKTYACIGSYNNHIGVPLTLARM------PVDVDFGIFE----------LGMSHLGEIRF 177
           ++  A IG+  N  G P  LA        P+ +   + E          + +S  G  + 
Sbjct: 123 QRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQG 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD----SF 231
             + V   IAV T +   HL     ++  A+AK  + E  GL+      LN +D    +F
Sbjct: 181 RVNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLK---LAVLNAEDAYGLTF 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHG 287
            + L+++      + + S+G  ++ D        C+     ++ M++ +     +V  H 
Sbjct: 238 LQALRSEG-----RPVLSYGM-QSGDV------HCTSLHLHETGMQLSVTTPWGDVTLHA 285

Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+L  L  +  +   ++ A +A++   P  GR ++Y    N     +ID  
Sbjct: 286 AVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGRMEQY--GGNAMPVVVID-- 341

Query: 346 YNANPASMKAAISVLSQ 362
           Y   P +++ A+  L +
Sbjct: 342 YAHTPDALENALQALRE 358


>gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella woodyi ATCC 51908]
 gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC
           51908]
          Length = 502

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 22/223 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGS 80
           VN +S+DSR +   + F A+ G   DG D+I  A + GA + +V+TD       V +  S
Sbjct: 19  VNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSLVHTDNPEMHGKVLTSNS 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             I  F +   L AL   A    +  +  ++ +TG+ GKT+  +++   L  + K  A +
Sbjct: 79  TQIFFFQLSRQLSALAAQAYPLPVE-RLKLVGVTGTNGKTSITQLMAQLLVCLGKQPAVM 137

Query: 141 GSYNNHI-----------GVPLT-LARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHI 186
           G+  N +             P+T +A++    + G  +  + +S  G I+     V   +
Sbjct: 138 GTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEVSSHGLIQARVDAVPFDL 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYD 228
           A+ T ++  HL     ++    AK  +F+    K+G I L+ D
Sbjct: 198 AIFTNLSRDHLDYHGTMQAYGEAKFRLFKFPSLKSGVINLDDD 240


>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
 gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
          Length = 477

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 156/377 (41%), Gaps = 57/377 (15%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--- 73
           H +GI P    + ++ DSR +     F A  G   DG  +I  A+  GAG V+   +   
Sbjct: 8   HDLGIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEGFS 63

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
               + ++++PV  +    G +         R+   ++ +TG+ GKT+  + LT  L+S+
Sbjct: 64  WPTDLQAVNLPVKDLRKQAGEIADEFYGHPSRA-LWMVGVTGTNGKTSCTQWLTHCLNSL 122

Query: 134 KKTYACIGSYNNHIGVPLTLARM------PVDVDFGIFE----------LGMSHLGEIRF 177
           ++  A IG+  N  G P  LA        P+ +   + E          + +S  G  + 
Sbjct: 123 QRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQG 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD----SF 231
             + V   +AV T +   HL     ++  A+AK  + E  GL+      LN +D    +F
Sbjct: 181 RVNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLK---LAVLNAEDAYGLTF 237

Query: 232 FELLKAKSHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            + L+++      + + S+G       S +        +      W +V LQ   M    
Sbjct: 238 LQALRSEG-----RPVLSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVM---- 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G   A N+L  L  +  +   ++ A +A++   P  GR ++Y    N     +ID  
Sbjct: 289 ---GRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGRMEQY--GGNAMPVVVID-- 341

Query: 346 YNANPASMKAAISVLSQ 362
           Y   P +++ A+  L +
Sbjct: 342 YAHTPDALENALQALRE 358


>gi|304310319|ref|YP_003809917.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
 gi|301796052|emb|CBL44256.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
          Length = 480

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 178/428 (41%), Gaps = 60/428 (14%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   G  ++VV+T + ++   L       IPV    ++LG L +           
Sbjct: 69  IGHAAKNVDGTDVIVVSTAIDSANPELDAARERRIPVVPRAEMLGELMRYRYG------- 121

Query: 109 TIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IA+ G+ GKTTT  ++   +A      T+  IG   N  G    L         G F 
Sbjct: 122 --IAVAGTHGKTTTTSLIASILAEGGSDPTF-VIGGRLNSAGTNAKLG-------TGRFL 171

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL HL +P ++V+T I   H+S ++G    +          L   G   L
Sbjct: 172 VAEADESDASFL-HL-QPMVSVVTNIDFDHMSTYNGDFNRLKETFLRFLHNLPFYGLAVL 229

Query: 226 NYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEV 283
             DD +  E+L   S     + + ++G    AD Q    +    QS   V +   +S+ +
Sbjct: 230 CVDDPTIREILPQIS-----RPVVTYGIDHEADIQAVDIQNVGLQSTYRVLRRDAESLSI 284

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFF 339
             +  G H   N L  + + S      D   +AL  F   +G G+R++      +  G  
Sbjct: 285 TLNIPGRHNVLNSLAAIAVASDENIAGDAIARALEKF---QGVGRRFQIQGEIPIMGGTV 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TL+D+ Y  +P  + A I+ + Q  P    RR+ ++         ++  + D  +VLS  
Sbjct: 342 TLVDD-YGHHPREVAATIAAVRQSWP---SRRLVMIYQPHRYSR-TRDLYEDFVQVLSDV 396

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           ++     V+ +G   +A  D  +L RSI +       + E    L   ++  L++GDVV+
Sbjct: 397 DVLLLMEVYSAGEEPIAGADSRSLCRSIRMRGAVEPIFIEEPSVLPSVLEKHLLNGDVVL 456

Query: 449 VKSSNSCG 456
            + + + G
Sbjct: 457 TQGAGNVG 464


>gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
 gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
          Length = 492

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 27/228 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V+ + +DSR + P + F AIKG   DG  FI  A++KGA  V V  D +       
Sbjct: 16  PSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGA--VAVIADRLCEFDVAF 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             ++ V ++   L +L  A+R   K +    +I +TG+ GK+TT  M+           A
Sbjct: 74  ESLYLVSELDKKLAEL--ASRFYDKPSHNLDLIGVTGTNGKSTTTAMIAHLAQYCNTQSA 131

Query: 139 CIGSYNNHIGVPLTLARM----PVDVDF------------GIFELGMSHLGEIRFLTHLV 182
            IG+     G P  L  +    P  VD              +  + +S  G ++      
Sbjct: 132 IIGTLG--FGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAMEVSSHGLVQHRVAQC 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +   AV T ++  HL     +     AK  +F   +    + LN DD+
Sbjct: 190 QFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFDPQ-LVVLNQDDN 236


>gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
 gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
          Length = 501

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 143/376 (38%), Gaps = 41/376 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +AP +AF A  G   DG   +  A+ +GA   +V  + V   G     +  + 
Sbjct: 25  LQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQEDVEPFGLAGEHIAALP 84

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------YACI 140
            +  A   +A     R   +  ++A+TG+ GKT+T   L  AL+ + K         A +
Sbjct: 85  GLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADALNGLSKKELPALAGCALV 144

Query: 141 GSYNNHIGVPLTLARM------PVDVDFGIFELGMSHLG------------EIRFLTHLV 182
           G+    IGVP  L+        PV +     +     LG            E R     +
Sbjct: 145 GTLG--IGVPPGLSSTGMTTPDPVRLQRAFAQFAQEGLGACAIEASSIGLAEQRLAGTQI 202

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSH 240
              +A+ T +   HL   S +     AK  +F+  GL       +N DD+    L A+  
Sbjct: 203 --SVALFTNLTQDHLDYHSDMAAYWQAKRVLFDWPGLRAA---VVNIDDAHGARLHAELQ 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  ++S      A  Q R            V    +++ +    IG +   N+L  +
Sbjct: 258 GGGLD-LWSVSIQGPARLQARDIVHRGAGLAFTVAESAQALPLQTRLIGLYNVSNLLGVI 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L   +  A+ A +   P  GR ++   A       L+   Y   P ++  A++ L
Sbjct: 317 AGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQ----PLVAVDYAHTPDALHQALAAL 372

Query: 361 SQISPHGEGRRIAVLG 376
             ++    GR   V G
Sbjct: 373 RPMAAQRGGRLWCVFG 388


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81
           +N +S DSR I     F AI G   DGH FI  A+ +GA  +VV++     D  A+I S 
Sbjct: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135
           + P+  VD+    L+  A     +    I+A+TG+ GK++    +        LSS +  
Sbjct: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148

Query: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181
             + I S+  +N +    P+ LA+            V V+     L    L  I+ +   
Sbjct: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240
                   T +   H+      +   +AK  +FE  L K     +  DD++ + +  ++H
Sbjct: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + + S G  +     L+K      +  + + ++GK  + +    G     N L+  
Sbjct: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   +  D    ++ L   H   GR + +    ++G    +D ++ +N   M     +L
Sbjct: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373

Query: 361 SQISPHGEGRRIAVLG 376
             I     GR I V G
Sbjct: 374 KNIRTITSGRIIVVFG 389


>gi|167896008|ref|ZP_02483410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 7894]
          Length = 160

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 7/78 (8%)

Query: 317 LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAV 374
           L  F P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V
Sbjct: 4   LEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLV 58

Query: 375 LGDMCEMGELSQSFHIDL 392
           +G+M E+G+   +FH ++
Sbjct: 59  IGEMGEVGDEGPAFHREI 76


>gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
 gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
          Length = 526

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 29/257 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           + GI++ S        F AI G    G  F   A++ GA +V+ + D  A      L +P
Sbjct: 45  LRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVP 104

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D    + +L   + A   ++ T +A+TG+ GKTTT  ++  A++S     +  G+
Sbjct: 105 VIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGT 164

Query: 143 YNNHIGVPL------TLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPH------- 185
              H+G P+      T A  PV   F      +E G    G I    H +  H       
Sbjct: 165 VETHVG-PISFEAVRTTAEAPVVARFLAATEQYECGA---GVIELSAHALSLHRVDGIVF 220

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL  +  +E    AKA +F   E +    +  DD +   L A+   + +
Sbjct: 221 DVAAFTNLQHDHLDYYGDMENYFQAKALLFTP-EHSRHGVVCVDDEWGRRL-AQQATVPV 278

Query: 245 KTIYSFGKSKNADFQLR 261
            T+ +  + + AD+Q+R
Sbjct: 279 TTVSALTE-ETADWQVR 294


>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
 gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
          Length = 489

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 149/397 (37%), Gaps = 45/397 (11%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P    H+LL A  G     +P   + G+S DSR + P + F  + G   DG +F   A+ 
Sbjct: 2   PAMRLHELL-ARTGLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAIA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTT 121
            GA  +V++ +  A     ++PV  V DV+G   +LA A     ++   +A        T
Sbjct: 61  GGAAGLVISEN--ARGVEAAVPVIRVPDVVGTCARLASAYYDFPARKLTLAGVTGTNGKT 118

Query: 122 TKEMLTIALSSIKKTYACIGS-YNNHIG--------VPLT------LARM-PVDVDFGIF 165
           T   L   L   +     +G+ Y+   G         P        LA+M      +G+ 
Sbjct: 119 TTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYGVM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R      R   AV T +   HL     +E    AKA +F    ++G   +
Sbjct: 179 EVSSHALAQQRVAG--CRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPEYRSGRAVI 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +           G++   ++ +     FQ        +  +    ++G  +  V 
Sbjct: 237 NADDPW-----------GVRLAAAYDQVWTYSFQPGADIYPEDAVFTPEGIRGTLVTPVG 285

Query: 286 HG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G     N+L  +G    L  D++     LS F    GR +R   + +    
Sbjct: 286 RAAFTSPLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGS-DDDIA 344

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++D  Y   P  ++    +L    P   GR I V G
Sbjct: 345 VIVD--YAHTPDGLR---KLLEATRPFVRGRLICVFG 376


>gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SS3/4]
          Length = 460

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 160/390 (41%), Gaps = 48/390 (12%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           A+  + ++P+    ++LG L        +++    IA++G+ GKTTT  MLT  L   KK
Sbjct: 87  AAAAAKNLPILSRAELLGQL--------MKNYEKSIAVSGTHGKTTTTSMLTEILMDEKK 138

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIA 193
                   N  I V   L  +  ++  G  EL ++   E    FL+    P++ +I  I 
Sbjct: 139 --------NPTISVGGMLDSIGGNIRVGGPELFVTEACEYTNSFLSFF--PNMEIILNIE 188

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYS 249
             HL  F  IE+I  +  +  E L   G + +N D        + L  K   +G     S
Sbjct: 189 ADHLDFFKDIEDIRHSFRKFAELLPANGVLIINSDIRDYKEICDGLPIKVITVGSDPAKS 248

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTA 308
              + +  F       C+  + +E    GK+++ +  G+ G H   N L ++     L  
Sbjct: 249 HYSAADVTFN---ENACATYTLLE---DGKAIDTITLGVPGIHNVYNSLASIAAAHELGI 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362
             +     L  F    G  +R+      G  T+ID+ Y  +P  + A ++          
Sbjct: 303 RGEGIRNGLLRF---TGTHRRFEKKGMIGGVTVIDD-YAHHPQEIAATLAAAKNYPHREI 358

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                PH   R  A++ D  +   LS + H+ LA++ +     ++ +S    LA K A  
Sbjct: 359 WCVFQPHTYTRTKALMEDFAKA--LSAADHVVLADIYAARETDNLGISS-GTLAEKIA-A 414

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                HY  + D +  F+  + V+GD+++ 
Sbjct: 415 LGTDTHYFPSFDAIETFLLENCVNGDLLIT 444


>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
 gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
          Length = 434

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165
           A I A+TGS GKTTT  ++   L   ++ Y C      +IG+PL L+++    D D  + 
Sbjct: 85  AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 139

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T    P++AV+T ++P HL     +EE  SAK  IF        + L
Sbjct: 140 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVL 194

Query: 226 NYDDS 230
           N+D+ 
Sbjct: 195 NFDND 199


>gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium vitis S4]
 gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase
           [Agrobacterium vitis S4]
          Length = 486

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 160/399 (40%), Gaps = 60/399 (15%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F DL   + G  +G V    + GI+ DSR + P   F A++G   DG  F+  AV +GA 
Sbjct: 11  FGDLTGPLDG-PVGDVE---ITGITADSRKVEPGMLFVALQGVKADGAGFVADAVARGAA 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+  + +      +++P    D    AL  LA         T++A+TG+ GKT+     
Sbjct: 67  AVLSGSHL-----DIAVPALVTDQPRHALALLAARVYSGQPETMVAVTGTAGKTSVA--- 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFELGMS 170
               S  ++ +A  G  +  IG    ++  P   D+G                + + G++
Sbjct: 119 ----SFTRQIWAYAGLASAQIGTTGVIS--PTRSDYGSLTTPDPVALHQLLADLAQEGVT 172

Query: 171 H---------LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           H         L + R     VR   A  T +   H+     + +  +AK  +F+ L   G
Sbjct: 173 HAAMEASSHGLDQSRL--DGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLPKG 230

Query: 222 T---IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQ 277
           +   IF + + S   +  A+     ++T+   G     DF  L++ +    +   E+  Q
Sbjct: 231 SPAVIFADDEWSAEAIRVARQAGHDVRTVGRAG-----DFLSLKRVEHFRHKQIAEIHHQ 285

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G   EV     G     N L++ G+      +   A+KAL       GR +    A N G
Sbjct: 286 GAIFEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQA-NSG 344

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
               +D  Y   P +++    VL+ + P   GR I V G
Sbjct: 345 ALAYVD--YAHKPDALE---KVLTAVRPFTSGRIIVVFG 378


>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
 gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
          Length = 482

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 98/247 (39%), Gaps = 29/247 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F  I+G   DGH +   A   GA ++V   D+          + 
Sbjct: 22  IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSCYKDCTII 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  +A            II ITG+ GKTT+  M+   L         +G+  
Sbjct: 82  KVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141

Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186
           N+IG          P  L L ++  D     VD+ + E+    L    +L  +  V    
Sbjct: 142 NYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL      E   ++K  +F+  + +    +N DDS+ E  K    ALG K 
Sbjct: 198 AIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKV 252

Query: 247 IYSFGKS 253
            Y   KS
Sbjct: 253 TYGVEKS 259


>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
          Length = 469

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 109/269 (40%), Gaps = 28/269 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLT-LARMPVDVDF 162
           A IIA+TG+ GKTTT  ++    ++I   +A    Y      +IGVP + +       D 
Sbjct: 110 ARIIAVTGTDGKTTTATLI----AAICADHALAAGYRVFSVGNIGVPFSSMVGSMASGDI 165

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTG 221
            + E+    L    +     RP IA++T I P HL  + G   + A AK  IF    +  
Sbjct: 166 AVVEVSSYQLEGCTWF----RPDIALMTNITPDHLDRYDGSMRLYAEAKYRIFSRQRQDD 221

Query: 222 TIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           T+ +N DD    L +     LG +  + +FG               +E  W+ +   G  
Sbjct: 222 TLIVNADDPI--LRQRFEERLGVVPQLAAFGLDAGRTRAFAASGAVTEGGWITLFKSGSL 279

Query: 281 ME-VVHHG-------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            E V+ H        +G H   N L            + +  +AL  F   E R + Y C
Sbjct: 280 DERVIAHEDLLKRGFMGRHNLSNALAAALAADAAGVPLSSIKRALKAFGGVEHR-QEYVC 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLS 361
            ++      I++S   N  +M+ A+  +S
Sbjct: 339 EIDG--VICINDSKATNLNAMRQALEAVS 365


>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 485

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +        +    
Sbjct: 22  DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEM---KHKVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +D++   L  LA       + K  II +TG+ GKT++  M+   +     T   IG+   
Sbjct: 79  IDEIRHKLGYLASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR--IGTIEY 136

Query: 146 HIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            IG  V   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLEIGRVDVLDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+ T     N DD +
Sbjct: 195 TNLTQDHLDYHVTMENYFQAKRKLFLKLKDTNNSVFNIDDKY 236


>gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 494

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 43/387 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + + P   +  + +DSR++     F A++G   DG  +I  A+ KGA  V+  T+    
Sbjct: 10  QVELAPNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQ 69

Query: 78  IGSLSI----PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             S  I    P+     +   L+ LA         K T++ +TG+ GKTT  ++L    +
Sbjct: 70  HLSTKIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQLLAQWTT 129

Query: 132 SIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            +    A +G+  N +          T + + V      F    +    I   +H +  H
Sbjct: 130 LLGHRSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSHGLVQH 189

Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LK 236
                   +A+ T ++  HL     +E  A AK  +F  L     I +N DDS  +  L+
Sbjct: 190 RVEALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQI-INADDSVGQTWLQ 248

Query: 237 AKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + +A+ +     F        K+    F  +  +   E SW + +L           IG
Sbjct: 249 EQPNAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSAL-------IG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L+    +  L  D++  +K +       GR +R   A NQ    ++D  Y   
Sbjct: 302 QFNVSNLLLVFATLLSLGYDIEKLMKTVPQLTGVCGRMERL-SASNQP-TAIVD--YAHT 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P +++ A   L     H +G+   V G
Sbjct: 358 PDALEKA---LQAARLHCQGKLWCVFG 381


>gi|262066316|ref|ZP_06025928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380011|gb|EFE87529.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 432

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 39/326 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H D  +F +    K  G+   N   V  +    I +  +D++ 
Sbjct: 32  DKKAMTSEEAM-----QHLDNIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 78

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + V   L++K  IIAITG+ GK+TT    T  +S +         Y  +IG  L+
Sbjct: 79  VAYNYM-VEKNLKTK--IIAITGTNGKSTT----TAKISDLLNHAGYKACYAGNIGRSLS 131

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  +       +P+I++I  + P H+  +   +E    K 
Sbjct: 132 EVLLHEKDLDFVSLELSSFQLENVENF----KPYISMIINMGPDHIERYKSFDEYYDTKF 187

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +  ++      N DD   E    ++  +  K I S  KSK A+  +   K    +  
Sbjct: 188 NISKNQDENQYFIENIDDVEIE---KRAKQIKAKRI-SVSKSKEANIYVANDKIYVGKDC 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + + +   S++      G H  +N L  +    IL  D +   + L +  P E R + + 
Sbjct: 244 I-IDVDKLSLK------GIHNVENTLFMVATSEILNIDREKLKEFLMIATPLEHRTELF- 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAI 357
              N G    I++S   N  S K AI
Sbjct: 296 --FNYGKVKFINDSKATNVDSTKFAI 319


>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|158513249|sp|A3DE94|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           thermocellum ATCC 27405]
          Length = 466

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165
           A I A+TGS GKTTT  ++   L   ++ Y C      +IG+PL L+++    D D  + 
Sbjct: 117 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T    P++AV+T ++P HL     +EE  SAK  IF        + L
Sbjct: 172 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVL 226

Query: 226 NYDDS 230
           N+D+ 
Sbjct: 227 NFDND 231


>gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
 gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
          Length = 494

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 149/376 (39%), Gaps = 43/376 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR+I   + F AI G   DG  FI  AV +GA  V+       + G +    +
Sbjct: 27  VEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWLNA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  V ++   L++LA          +I +TG+ GKTT  +++   L  + +  A +G+
Sbjct: 87  VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188
             N    ++ +        +++   + EL           +S  G ++     +   + V
Sbjct: 147 TGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEVGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +EE A AK  +F    K     +N DD        K+    +    
Sbjct: 207 FTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEV-----GKAWVSDLSNAI 260

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQL-------QGK-SMEVVHHGIGYHMAQNMLMTL 300
           +   S    +Q   W      +   +QL       QGK S+ +    IG   A N+L+  
Sbjct: 261 AVSLSPLTGYQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPL----IGQFNASNVLVAF 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L  D    +   S   P  GR + ++   N+    +    Y   P +++ A++ L
Sbjct: 317 STLLSLGIDKQILVDTASQLQPVIGRMELFQTP-NKAKVVV---DYAHTPDALEKALAAL 372

Query: 361 SQISPHGEGRRIAVLG 376
                H  G+  A+ G
Sbjct: 373 ---RVHCSGQLWAIFG 385


>gi|148927746|ref|ZP_01811182.1| cytoplasmic peptidoglycan synthetases domain protein [candidate
           division TM7 genomosp. GTL1]
 gi|147886909|gb|EDK72443.1| cytoplasmic peptidoglycan synthetases domain protein [candidate
           division TM7 genomosp. GTL1]
          Length = 302

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   IAV+T +   H+  F  ++ +A  +  + +    +    +N DD   E +K     
Sbjct: 1   IHADIAVVTGVTNEHMEFFKTLDAVAQEELAVSQF---SSLTVVNRDDVLGEFVKY---- 53

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQ 294
           +   +I ++G S +A+++        E S +E   +GK        M V  H +G H  +
Sbjct: 54  VNTSSIDTYGLSGSAEYRF-----VVEDSSLEEGFRGKFISLEFGEMPVTLHVVGEHNTK 108

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
             +    + + +          L    P +GR    +   +     L+D+SYN++  +  
Sbjct: 109 AAVAAGLVAAKMGLSAKEIAAGLEKIRPVKGRMNLLKGLEDS---ILLDDSYNSSAVTAV 165

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           AA+  L +I      +RIA+LG + EMGELSQS H
Sbjct: 166 AALQTLYKIQAP---QRIAILGSINEMGELSQSEH 197


>gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 1313]
          Length = 466

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165
           A I A+TGS GKTTT  ++   L   ++ Y C      +IG+PL L+++    D D  + 
Sbjct: 117 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T    P++AV+T ++P HL     +EE  SAK  IF        + L
Sbjct: 172 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVL 226

Query: 226 NYDDS 230
           N+D+ 
Sbjct: 227 NFDND 231


>gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 508

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 149/377 (39%), Gaps = 38/377 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR IA  + F A  G   DG  +I +A+++GA  V+             +    +D
Sbjct: 25  LASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEWDVAHLAID 84

Query: 90  DVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---- 143
           D+     ++A A       ++  +AITG+ GKT+  + L  ALS + +  A IG+     
Sbjct: 85  DLKEHAGEIAAAYYAHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIGTLGVGI 144

Query: 144 ---NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT-------HLVRP-----HIAV 188
                H    +T    P  V      + +S+LG             H  R       +A+
Sbjct: 145 FTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSGMHFDMAL 204

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS----FFELLKAKSHAL 242
            T     HL     +     AKA +F+  GL+      +N DD+      + L+++   +
Sbjct: 205 FTNFTRDHLDYHGDMAAYEEAKAMLFDWPGLQHA---VINLDDAMGVRLVQRLQSRQADV 261

Query: 243 GIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMT 299
           GI T Y+    K +    LR     S QS    QL+  +   +V    +G     N+L  
Sbjct: 262 GI-TGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQFNVSNVLGI 320

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +GI+      +  A+ A+       GR ++    L  G   L+   Y   P +++  ++ 
Sbjct: 321 IGILLAKGIALQDAVNAVEALTAVPGRMQQ----LGGGEAPLVVIDYAHTPDALEKTLAT 376

Query: 360 LSQISPHGEGRRIAVLG 376
           L  ++    G    V G
Sbjct: 377 LRSVANDRGGELWCVFG 393


>gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 485

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 46/374 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G ++DSR +A    F A  G   +G DFI  A+  GA  +V   +         + + 
Sbjct: 26  VLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 76

Query: 87  GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           G   ++    +LA   +AAR  +     + A+TG+ GKT+  E+     +      A IG
Sbjct: 77  GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIG 136

Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                    SY+  +  P           LAR   D+   IFE     L + R  +   +
Sbjct: 137 TLGVITAKNSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                 T+ +  HL     +E   +AK  +F E +   GT  +  DD     + A     
Sbjct: 193 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKR 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+K I  +   K    +L   +  S+   + + ++G+S ++    IG +   N L+  G+
Sbjct: 253 GLKLIDIW---KAEAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGLVRAGL 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V     D+   + AL++  P  GR +R   + N G    +D  Y   P  ++AAI  L  
Sbjct: 310 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 364

Query: 363 ISPHGEGRRIAVLG 376
             PH EG    V G
Sbjct: 365 -RPHTEGLLWVVFG 377


>gi|315657994|ref|ZP_07910868.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
 gi|315497030|gb|EFU85351.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
          Length = 437

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 122/304 (40%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPQS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++  RP  A++T I   H   F  +E++  A  E+   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--RPDYAIMTNIDFDHPDYFKDVEDVFDAFQEMANNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD     L           IY +G S   D      +   + +  +V + GK    
Sbjct: 201 IAWGDDEHLRKLNVDI------PIYYYGLSDKDDVYANDIQITDKGTEFDVYINGKYYNH 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H  QN L  + I  +   DV    +AL  F    G  KR           L+
Sbjct: 255 FLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETF----GGVKRRFNETKYDQQILV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +  +   LS++ H+ L
Sbjct: 311 DD-YAHHPREISATIETARKKYPNKEVIAVFQPHTFSRTQAFLNEFAD--SLSKADHVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M12]
 gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Xylella fastidiosa M12]
          Length = 491

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 150/383 (39%), Gaps = 45/383 (11%)

Query: 22  VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           +PQ     ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         
Sbjct: 10  IPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGV 69

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132
           S+   +I V G+   LGA+     A R     S+A T++ +TG+ GKT+T ++L  A   
Sbjct: 70  SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 124

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH-- 185
           +    A  G+    +GV L    +P      +       LG++R      +   V  H  
Sbjct: 125 LGVRSATCGT----LGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180

Query: 186 -----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                      +AV T +   HL     +E   +AKA +F   +    + +N DD  F L
Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAV-INVDD-LFGL 238

Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                 A G++ +  S     +AD   +      +    ++ +      V    +G    
Sbjct: 239 RLLHGLAKGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNV 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L   G++  L   +      LS   P  GR  R      Q    +    Y   P ++
Sbjct: 299 DNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDAL 355

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
                VLS +S H  GR I V G
Sbjct: 356 G---QVLSSLSSHVCGRLICVFG 375


>gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           WUE 2594]
          Length = 445

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEYEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|222053882|ref|YP_002536244.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
 gi|254766004|sp|B9M173|MURC_GEOSF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221563171|gb|ACM19143.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
          Length = 458

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 113/271 (41%), Gaps = 31/271 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  M+   L++  I  T   IG   N IG    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSMVATILATGGIDPTI-VIGGRLNSIGTNARLGQ-------GKFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL   + P IAV+T I   HL  +SGIEEI     E    +   G   L  D
Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           +       A    L  K   ++G +  ADF+  + +     +      +G+ + E+  + 
Sbjct: 218 NGNV----ADIIPLVKKRFTTYGLTAQADFRATEIRHEGFTTSFVAHYKGQKLGEISFNM 273

Query: 288 IGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            G H   N L T+ + + L     D+    K+        G G+R++         ++D+
Sbjct: 274 PGAHNVLNALATIAVATELDMRFEDIQAGFKSFG------GVGRRFQVKGEVNGIMVVDD 327

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            Y  +P  +KA ++     +  G  RR+ V+
Sbjct: 328 -YGHHPTEIKATLAA----AKGGWDRRLVVV 353


>gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
 gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
          Length = 450

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGFPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P HL      E   +AK  I + +   
Sbjct: 162 DTLVMELSSFQLMGIEAF----HPEIAVITNLMPTHLDYHGSFEGYVAAKWAIQKNMTAK 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             + LN++    + L  ++ A    T+  F   +  D            +++E   +  +
Sbjct: 218 DFVVLNFNQDLAKDLSQQTQA----TVVPFSTQEKVD-----------GAYLEDGVLYFR 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M     G+ G H  +N L T+ +  +   D  T  + LS F
Sbjct: 263 GEAVMRADQIGVPGSHNVENALATIAVAKLRGIDNQTIQETLSAF 307


>gi|315504606|ref|YP_004083493.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5]
 gi|315411225|gb|ADU09342.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5]
          Length = 493

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 125/291 (42%), Gaps = 43/291 (14%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH-IGV 149
           A+AA +  + T+ A+ G+ GKT+T  M+T+ L          I    + +GS  +H  G 
Sbjct: 109 ALAAAMTGRRTV-AVAGTHGKTSTTSMVTMVLQQAGTDPSFVIGGEISEVGSGAHHGTGE 167

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              +     D  F I+                 RP +++IT I   HL+ +  +  + +A
Sbjct: 168 HFVVEADESDRSFLIY-----------------RPFVSIITNIEADHLNTYGDLATLEAA 210

Query: 210 KAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            AE     +  G +    DD+      E L+A+      + ++++G+S +AD ++ +   
Sbjct: 211 FAEFARLTDPAGFVITCADDAGGCRLAETLRAEG-----RRVWTYGESADADLRMSEVVS 265

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +     + +++G+ +  +   + G HMA N    +    +L   V  A  AL  F    
Sbjct: 266 SAHGVRYQAEVEGRPLGEIRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGAFPGVR 325

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            R +R   A       L+ + Y  +P SM  A+  L +++  G+GR I V 
Sbjct: 326 RRFERKGAADG----VLVYDEYAYHPTSMTLALQTLREVA--GDGRLIVVF 370


>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 502

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 156/399 (39%), Gaps = 44/399 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR+I P   F  + G + DGHD+I HA+Q GA  ++   ++    G+++    
Sbjct: 23  ITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNGAVAIMAEKELPELPGNIT--RI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L  LA +       +  +I ITG+ GKTTT  M+   L+   +    IG+  
Sbjct: 81  TVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTTTHMVDKVLNDSNRKTGIIGTLY 140

Query: 145 NHIG--VPLTLARMPVDVD--------------FGIFELGMSH---LGEIRFLTHLVRPH 185
             IG  V  TL   P  +               +G+ E+  SH   +G +R         
Sbjct: 141 MKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLEVS-SHGLDMGRVRGCDF----Q 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSH 240
             V T ++  HL     +E   + K  +F  L     +    + LN DD+       ++ 
Sbjct: 196 TVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKVVLNADDAASSYYGKRTS 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I ++G    AD +    +   +     V+    S +      G H   N L  +
Sbjct: 256 A----QIVTYGIHNPADVRALHIQNTGDGCRFIVETPWGSSDFTMKVYGVHNVYNALAAI 311

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +    +     +L  F    GR +  +   ++ F  ++D  Y  NP  +KA +   
Sbjct: 312 TTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKT--DRSFRVVVD--YAHNPDGLKATLLSA 367

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +I+    G+ I V+G   E   L +    D+A   S Y
Sbjct: 368 KEIT---SGKMICVMGCRGERDRLKRPIMADIAASYSDY 403


>gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 462

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 149/366 (40%), Gaps = 40/366 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAVAGTHGKTTTTSLVASILAAGGMDPTF-VIGGRLNAAGANACLGS-------GDFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I+V+T I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFL--FLSPVISVVTNIDADHMETYGHDFNRLKQAFVEFLQRLPFYGVAVLCA 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGK--SMEV 283
           DD+   E++   S     K I ++G    A+F          Q   + V++ G    + V
Sbjct: 218 DDANVREIMPQVS-----KQIVTYGLDPAANFYAENVTAEGGQMRFDCVRVNGSVSRLPV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCAL-NQGFFTL 341
             +  G H   N L  + + S +    D  +KAL+ F     R +RY   AL + G FTL
Sbjct: 273 TLNLPGRHNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYGEIALADGGCFTL 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS  + 
Sbjct: 333 VDD-YGHHPVEMSATLTAARGAFP---GRRLLLAFQPHRYTRTRDRFE-DFVKVLSGVDA 387

Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +    +   D  AL R++ V       + E++  +   I   + DGDVV+  
Sbjct: 388 LVLTEVYAASEQPIVAADGRALARALRVAGKVEPVFVESIGDVPQAILDIVRDGDVVITM 447

Query: 451 SSNSCG 456
            + S G
Sbjct: 448 GAGSIG 453


>gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
 gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 447

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 139/333 (41%), Gaps = 43/333 (12%)

Query: 51  YDGHDFILHAVQKG-AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAAR 103
           Y GH+    A Q G A +VV++T +  +   L      SIPV    + L         AR
Sbjct: 49  YIGHE----ARQVGDAEVVVISTAIPKTNPELLEARRRSIPVIPRAEAL---------AR 95

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           + ++   IA+ G+ GKTTT  M+  +L ++ +   A +G   N IG          +V F
Sbjct: 96  ILAEGRGIAVAGTHGKTTTTSMIAHSLRALGENPTALVGGELNDIGS---------NVIF 146

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G  +L ++   E       + P  AVIT I   H   ++ +EE+    A    GL   G 
Sbjct: 147 GREDLIVAEADESDRSILRLHPQAAVITNIEYDHPDFYASLEEVVETFARFVAGLPPEGH 206

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + L  DD     L      L    + ++G S     +LR  +  S  S++  +   K  E
Sbjct: 207 LVLCADDPRCRRLA----ELAPCPVTTYGLSGG---ELRA-RVLSPGSYLLFEGARKRGE 258

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L   GI   L  D   A + L  F    G  +R++    +    ++
Sbjct: 259 VSLGVYGRHNVLNSLAAAGIARWLGHDPLEAARTLGSFG---GVRRRFQLKGERSGVRVV 315

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           D+ Y  +P  + A + V ++ +   EGR IAV 
Sbjct: 316 DD-YAHHPTEIMAILDV-ARATAAPEGRIIAVF 346


>gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum WCFS1]
 gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus plantarum WCFS1]
          Length = 550

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 128/329 (38%), Gaps = 44/329 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F A+ G H DGHD +  A++KGA ++V +  +      +++PV 
Sbjct: 82  VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNVPVI 136

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG+  
Sbjct: 137 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 196

Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                          + I    TLA M    D G+  + M  S +  +      +   IA
Sbjct: 197 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FELLKA 237
           V T +   HL     + +   AKA +F  L       GT     LN DD     FE   A
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H L      +FG   +A    +  +  S  +  ++ + G    V    IG     NML
Sbjct: 314 -AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNML 366

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR 326
                        D  IK+L      +GR
Sbjct: 367 AAFAAAYASGIPEDQIIKSLEKVTGVKGR 395


>gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 463

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 115/286 (40%), Gaps = 35/286 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +S+ +     FFAI+G   DGHDFI  A++KGA  VV          ++ +    V+
Sbjct: 13  ITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPF-KDFKNIIV----VE 67

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSS------IKKTYACIG 141
           D   A  +   A          +I +TG+ GKT+T  ++   LS       I   Y  +G
Sbjct: 68  DSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKGGIIGTMYYKLG 127

Query: 142 SYNNHIGVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             N  I  P T   +              +DF   E+    L ++R   +  +    V T
Sbjct: 128 --NEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLR--VYPTKFFATVFT 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E   +AK  +F+  E    + LN DD +  +L  +     I    ++
Sbjct: 184 NLTQDHLDYHKTMENYFNAKRRLFKDYEYEVCV-LNIDDDYGSMLYEEFKDKAI----TY 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           G S+NA  ++  + Q  E        + K  E+  +  G   A NM
Sbjct: 239 GYSENAHLKIDYFDQ--ENKVFGFYYKNKHYEIKTNLKGDFQAYNM 282


>gi|187930156|ref|YP_001900643.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12J]
 gi|229620425|sp|B2UCX6|MURC_RALPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187727046|gb|ACD28211.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12J]
          Length = 483

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 151/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  +
Sbjct: 271 PLSITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGK 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P    RR+ +             F  D  +VL
Sbjct: 331 GHFTLIDD-YGHHPVEMAATLAAARGAFPD---RRLVLSFQPHRFTRTRDCFE-DFVKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I  +  DGD
Sbjct: 386 GTVDALLLAEVYAAGEPPIIAADGRALTRALRVANKIEPVFVEQIEDMPQAILDAAQDGD 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Nigg]
 gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Weiss]
 gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
          Length = 802

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 124/307 (40%), Gaps = 46/307 (14%)

Query: 90  DVLGALNK-------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG 141
           + L ALNK         + A L  +   I +TGS GKTT   ++T+ L    KT +  IG
Sbjct: 78  EFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             N   G+  +        ++ + E   S  G IR  +    P  +VIT I   HLSNF 
Sbjct: 138 GLNGE-GINGSSGS-----EYFVAEADESD-GSIRNYS----PEFSVITNIDDEHLSNFG 186

Query: 202 GIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           G  E   A  + F    KT  I + N D S     + +S  +G    ++FG + + D  +
Sbjct: 187 GDRERLLASLQDFS--TKTRQICWYNGDCS-----RLRSCLVG----HTFGFTSSCDLHI 235

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             ++Q   +S+  V+ Q    E V    +G H   N    +G+   L  D DT   AL  
Sbjct: 236 LTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQR 295

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEG 369
           F   + R +R     N     L  E Y  +P+ +   +           VL+   PH   
Sbjct: 296 FPGVQRRLQRK----NSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFS 351

Query: 370 RRIAVLG 376
           R    +G
Sbjct: 352 RLKECMG 358


>gi|29653494|ref|NP_819186.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 493]
 gi|154707034|ref|YP_001425281.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830659|ref|YP_001596104.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 331]
 gi|44888196|sp|Q83F17|MURC_COXBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029010|sp|A9KER2|MURC_COXBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029011|sp|A9NA45|MURC_COXBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29540756|gb|AAO89700.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 493]
 gi|154356320|gb|ABS77782.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762526|gb|ABX78168.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 331]
          Length = 465

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           L +  + A L  +   IA+ G+ GKTTT  ML+ A   +++  T+   G  NN       
Sbjct: 95  LKRGEMLANLMKEYQSIAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNN------- 147

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211
            ++ P  V  G + +  +   +  FL   + P IAV+T I   HLS + G    +     
Sbjct: 148 -SQTPARVGNGHYFIAEADESDASFL--FMHPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +  E   + G + L  DD     +      L  + + ++G S +A +++  + Q   QS 
Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIA----PLLSRRVITYGFSSDAQYRVVDYCQQGIQSL 260

Query: 272 MEVQ-LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK- 328
            ++   Q K+   V   + G H A N      I  ++  +    +K+L+ F   + R   
Sbjct: 261 FQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTI 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMK 354
           R    L +G   LI E Y  +P  +K
Sbjct: 321 RGEMILPKG-NALIIEDYGHHPNEIK 345


>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
 gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
          Length = 489

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 49/367 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR ++    FF I+G   DGHD+   A  +GA         VA +    +PV 
Sbjct: 24  IKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADRGA---------VAFLTEEELPVD 74

Query: 87  G----VDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           G    V D   A+ +L  AAR       + T+I +TG+ GKT+    +   L        
Sbjct: 75  GTQLIVRDSRRAMAQL--AARFYNYPSDRMTMIGVTGTNGKTSVTHFIQDLLKRAGTEAG 132

Query: 139 CIGS-YNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLT--------HLVRPH--- 185
            IG+ Y    G+   T+   P         L   +L     +T        HL R H   
Sbjct: 133 MIGTMYTELKGIQTETVNTTPESFTLQK-RLNEMYLAGAEAVTMEVSSHALHLGRVHGTA 191

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKA 237
             +AV T ++  HL     +++ A AK+ +F  L   G         +N DDS+ +++  
Sbjct: 192 FDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDAYKRAVINVDDSYADIMLG 251

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            S       + ++G  K  D +    +   E     ++L  +S  V     G     N L
Sbjct: 252 ASAV----PVITYGIEKPCDVRAEDLEVSPEGIRFTIRLNQQSYPVQLKLAGTFSVYNAL 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                V  +  + + A + LS     + RG+  R   +  F  ++D  Y   P  ++  I
Sbjct: 308 AAFAAVYAIGIEPEQAARFLSEL--PQVRGRFERVETDAPFHVIVD--YAHTPDGLENVI 363

Query: 358 SVLSQIS 364
               + +
Sbjct: 364 RTAKETT 370


>gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
 gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
          Length = 480

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 168/403 (41%), Gaps = 57/403 (14%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYAC 139
           S+PV    ++L  L K+ V+         IA++GS GKTTT  M+   ++S  +  T   
Sbjct: 105 SVPVIPRAEMLAELLKMKVS---------IAVSGSHGKTTTTSMIATVMASGGLDPTM-V 154

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           IG     IG   + ARM      G F +  +   +  FL   + P +AVIT I   HL  
Sbjct: 155 IGGKLGSIG---SNARM----GHGEFIVAEADESDGSFLK--LSPSLAVITNIDREHLDF 205

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           + GIE+I  A  +    +   G+  L  DD   + + +    +  KTI ++G    AD++
Sbjct: 206 YRGIEDIKDAFLQFANIVPFYGSAVLCLDDPHIKTILSD---IKRKTI-TYGMEPAADYR 261

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILT---ADVDTAIK 315
            ++ +     +  E+  + + +  V   + G     N L T+ +   L     D+   +K
Sbjct: 262 AQELRFNGAVTEYELYYRTECLGSVTLSVPGMFNVYNSLATVAVARELDMTFPDIQQGLK 321

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPH 366
           +        G G+R          T++D+ Y  +P  + A ++   Q+          PH
Sbjct: 322 SYV------GVGRRLEVKGKIAGVTVVDD-YGHHPTEISATLAAARQVWKNRMIVVFQPH 374

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---H 423
              R  A+  +   +G  +++   DL  V  +Y  S   + G    AL D + RS+    
Sbjct: 375 RYTRTQALFREF--LGAFTEA---DLLIVTDIYPASEDPIEGVTAEALCDGI-RSLTRRE 428

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVK---SSNSCGFYRLINL 463
           V Y      +  ++ + +  GD V+ +   S NS G   L  L
Sbjct: 429 VRYIPNFSDITDYLMTVVQPGDTVITQGAGSVNSVGVSLLSRL 471


>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
 gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
          Length = 485

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++    
Sbjct: 22  DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEM---KHNVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IGTIEY 136

Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            IG          P +L  + +        +++ + E+  SH  EI  +  +V    A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+      +N DD +
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEY 236


>gi|240017226|ref|ZP_04723766.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           FA6140]
          Length = 506

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 154/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  ++L+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPD---KRL-VLAFQPHRYTRTRDLFEDFTKILNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 425 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 484

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + LLE
Sbjct: 485 LNMGAGSIN--RVPSALLE 501


>gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
 gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
          Length = 833

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 124/307 (40%), Gaps = 46/307 (14%)

Query: 90  DVLGALNK-------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG 141
           + L ALNK         + A L  +   I +TGS GKTT   ++T+ L    KT +  IG
Sbjct: 109 EFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIG 168

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             N   G+  +        ++ + E   S  G IR  +    P  +VIT I   HLSNF 
Sbjct: 169 GLNGE-GINGSSGS-----EYFVAEADESD-GSIRNYS----PEFSVITNIDDEHLSNFG 217

Query: 202 GIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           G  E   A  + F    KT  I + N D S     + +S  +G    ++FG + + D  +
Sbjct: 218 GDRERLLASLQDFS--TKTRQICWYNGDCS-----RLRSCLVG----HTFGFTSSCDLHI 266

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             ++Q   +S+  V+ Q    E V    +G H   N    +G+   L  D DT   AL  
Sbjct: 267 LTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQR 326

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEG 369
           F   + R +R     N     L  E Y  +P+ +   +           VL+   PH   
Sbjct: 327 FPGVQRRLQRK----NSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFS 382

Query: 370 RRIAVLG 376
           R    +G
Sbjct: 383 RLKECMG 389


>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
 gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
          Length = 485

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++    
Sbjct: 22  DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEM---KHNVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IGTIEY 136

Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            IG          P +L  + +        +++ + E+  SH  EI  +  +V    A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+      +N DD +
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEY 236


>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 511

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 144/375 (38%), Gaps = 62/375 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  +S+ I     F AIKG   DGH +IL A +KGA   +V  D +       IP  
Sbjct: 25  IKKICYNSKFITESSLFVAIKGYITDGHKYILQAYEKGAVCAIV-EDFI----DCEIPQL 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143
            V++    L  ++         K  I+ IT + GKTTT  ML    +        IG+ Y
Sbjct: 80  KVENTRIELANVSKNFYDDPSQKLNIVGITATNGKTTTSFMLDKIYNDAGYRTGIIGTVY 139

Query: 144 NNH--IGVPLTLARMPVDVDFGIF------------ELGMSHLGEIRFLTHLVRPHIAVI 189
             +  I +P  L   P  ++   F             + +S   E  +    +  +I   
Sbjct: 140 TKYSDITIPSVLT-TPESLELQSFFRDMLKKKIEKVTMEVSSSSEELYRVKNIDFNIVAF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELL---KAK------- 238
              +  H+      E+   AK+++ +   K     LN D D   +LL   KA+       
Sbjct: 199 NNFSREHIDQHGSFEKYYEAKSKLVKEASKNAVAILNMDFDHIKDLLTQTKARVITYSLE 258

Query: 239 --SHALGIKTI--------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              +   I  +        Y F  ++N DF              +  L+ +S E+     
Sbjct: 259 NNDYDFSISELDLSTGFGKYIFNVNRNIDFN-------------DFVLKKQSFEINLSVA 305

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           GY    N +  + I  +   DVD   K++S F    G  +R+    ++  F +ID+ Y A
Sbjct: 306 GYSSVMNSVAAIIISLVQNIDVDIIKKSISAFS---GVERRFEMIYDEK-FKIIDDHY-A 360

Query: 349 NPASMKAAISVLSQI 363
           N  ++   +  LS++
Sbjct: 361 NVKNIDVTLETLSKM 375


>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
 gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
          Length = 444

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DVD  + EL  
Sbjct: 114 VIAITGSNGKSTVTD-LSGMLANAAGVKAAVG---GNIGVP-ALDLISPDVDLYVLELSS 168

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 169 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG  + A F L     R++    +++ M   E+ L     
Sbjct: 222 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 272 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 319

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 320 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 369

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 370 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 423


>gi|229087237|ref|ZP_04219383.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
 gi|228696079|gb|EEL48918.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L S+ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMSQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ + ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDVNDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    E     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
 gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
          Length = 494

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 59/336 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ DSR+      F A KG   D H F    + +G  ++VV +              
Sbjct: 23  VTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQ------------ 70

Query: 87  GVDDVLGALNKLAVAARLR--------------SKATIIAITGSVGKTTTKEMLTIALSS 132
              +V G + ++ V+  LR               + T   +TG+ GKT+   M+ +    
Sbjct: 71  ---EVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRK 127

Query: 133 IKKTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGE 174
           + K  A +G+    I           P T++   ++   VD G   + M   SH   LG 
Sbjct: 128 LHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGR 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS 230
           +R     V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD+
Sbjct: 188 LRG----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDA 243

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F E L     ++    I+++G   +A F+     +  +    E+     +  V    +G 
Sbjct: 244 FSEYLA----SVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGK 299

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               N++  +  V       +T ++A+    P EGR
Sbjct: 300 FNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGR 335


>gi|30022759|ref|NP_834390.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206969750|ref|ZP_03230704.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218233375|ref|YP_002369485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228910543|ref|ZP_04074357.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|228954966|ref|ZP_04116983.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960959|ref|ZP_04122591.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048395|ref|ZP_04193963.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|229072191|ref|ZP_04205399.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|229081944|ref|ZP_04214436.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|229112151|ref|ZP_04241693.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|229129967|ref|ZP_04258932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229147254|ref|ZP_04275609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229152887|ref|ZP_04281070.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|229181005|ref|ZP_04308340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|229194183|ref|ZP_04321039.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|296505155|ref|YP_003666855.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
 gi|33301350|sp|Q816X6|MURC_BACCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711860|sp|B7H746|MURC_BACC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29898318|gb|AAP11591.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 14579]
 gi|206735438|gb|EDZ52606.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218161332|gb|ACK61324.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228589274|gb|EEK47237.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228602562|gb|EEK60048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|228630707|gb|EEK87353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|228636212|gb|EEK92687.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228653492|gb|EEL09365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228671267|gb|EEL26569.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|228701532|gb|EEL54026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|228710929|gb|EEL62896.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|228723120|gb|EEL74497.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|228798739|gb|EEM45720.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804693|gb|EEM51295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228849107|gb|EEM93947.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|296326207|gb|ADH09135.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 148/371 (39%), Gaps = 67/371 (18%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGA 65
           HD+   +QG       + F    +++ RSI+  P                F  + V++G 
Sbjct: 22  HDMKHTVQGSD---YEKRFFTQTALEKRSISILP----------------FDKNNVEEGQ 62

Query: 66  GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++  N      + + +   L+IPV      LG          L S+ T +A+TG+ GKT
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------DLMSQYTSVAVTGAHGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178
           +T  +L   +     T   IG    H GV         +  + +FE       E R  FL
Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           ++   P  A++T I   H   F+ I ++ SA  E+   L+    I    DD   + ++AK
Sbjct: 160 SY--NPDYAIMTNIDFDHPDYFADINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297
              +     Y FG  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   EG  +R+      G   +ID+ Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATI 324

Query: 358 SVLSQISPHGE 368
               Q  P  E
Sbjct: 325 EAARQKHPERE 335


>gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 484

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 152/369 (41%), Gaps = 33/369 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS DSR +     FFA+ G   DG  +   A  +GA  +V      ++I  L +PV 
Sbjct: 22  VTGISSDSRQVKAGVVFFALAGTKADGAVYAEDAAARGAAAIVAGKG--STIAGLPVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSIKKTYAC 139
            VDD   AL + A     +    ++A+TG+ GKT+         E    A +SI  T   
Sbjct: 80  AVDDPRLALAQSAARYFGKQPEIMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVV 139

Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
               N++  +    P+ L ++  ++ D G+    M   SH  + R L   V+      T 
Sbjct: 140 APGRNDYGSLTTPDPVALHQLLQELADAGVTHASMEASSHGLDQRRLDG-VKLAAGGFTN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIY 248
           +   H+     IE+   AK  +F+ L   G    IF +   S    + AK+  L + T+ 
Sbjct: 199 LGRDHMDYHPTIEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTTVAAKAAGLNVLTV- 257

Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                ++ DF +L++ +    +   EV+  G   E+     G     N L++ G+     
Sbjct: 258 ----GRHGDFLRLKRVEHERHRQRAEVEADGVLYEIDLPLAGDFQISNALVSAGLAISTG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V  A+ AL       GR        N G    +D  Y   P +++   +VL+ + P  
Sbjct: 314 TPVAKALMALEKLKGAPGRLDLVGTTGN-GAPVYVD--YAHKPDALE---NVLASVRPFT 367

Query: 368 EGRRIAVLG 376
            GR I V G
Sbjct: 368 TGRVIVVFG 376


>gi|254393145|ref|ZP_05008303.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444045|ref|ZP_08218779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706790|gb|EDY52602.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 470

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 37/288 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYA 138
           LS+PV    D L         A L +    IA+ G+ GKTTT  ML +AL +  +  +YA
Sbjct: 92  LSVPVVHRSDAL---------ASLMTGLRAIAVAGTHGKTTTTSMLAVALGALGLDPSYA 142

Query: 139 CIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             G       N H G          D D  + E   S     ++      P +A++  + 
Sbjct: 143 IGGDLAGPGSNAHHG----------DGDIFVAEADESDRSFQKYA-----PEVAIVLNVE 187

Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             H +N++ ++EI  +  EIF G +   GT+ +  D      L ++        I ++G+
Sbjct: 188 LDHHANYASMDEIYESF-EIFAGRIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGE 246

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ AD ++++       S + V L G+ +       G H A N +  L   + L   VD 
Sbjct: 247 SEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDE 306

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              AL  +    G G+R +     G   +ID SY  +P  M A +  +
Sbjct: 307 LATALGAY---TGVGRRLQLKGEAGGVQVID-SYAHHPTEMTADLEAM 350


>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 455

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGI 164
           A IIAITGS GKTTT E+L  +   + + T+ C      ++G P +    R   D D  +
Sbjct: 111 AHIIAITGSNGKTTTTELLGHLFRKAGRNTFVC-----GNVGRPFSDDTDRTGPD-DLVV 164

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E+    L  I       RP ++++  I P HL  ++  I+  A++K  I E      T 
Sbjct: 165 LEVSSFQLDHIDSF----RPDVSILLNITPDHLDRYNQDIDRYAASKLRICENQTGVDTF 220

Query: 224 FLNYDD---SFFELLKAKSH-ALGI---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ- 275
             N DD   + F   +A+   ALGI   + I + G  +N+D  LR   Q  E++ M  + 
Sbjct: 221 IFNQDDERIARFVRKRARGPIALGISITEEIRATGFLRNSDLMLRINDQ--EENLMPTEK 278

Query: 276 --LQGK 279
             L+G+
Sbjct: 279 LALRGR 284


>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
 gi|118595667|sp|Q1D0S8|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
          Length = 455

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLA 154
            ++ +A R+ S   +  ITG+ GK+TT  +  T+  S  K+T+        ++G P + A
Sbjct: 99  GEVELAGRMLSGVPLFGITGTNGKSTTTALTGTLFASGDKRTF-----VGGNLGRPFSEA 153

Query: 155 RM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            M P D D  + EL    L  IR L    RP  A I  + P H+  +        AKA I
Sbjct: 154 AMSPGDWDALVVELSSYQLEGIRTL----RPRGAAILNLTPDHIDRYPSHAAYGEAKARI 209

Query: 214 FEGLEKTGTIFLNYDDS 230
           F+  +    + +N DD+
Sbjct: 210 FQNQQAGDFVVVNADDA 226


>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
          Length = 449

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 29/225 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   + 
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQG----GLLSGNIGFPASQVAQTATEK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT + P H+      E   +AK  + + + + 
Sbjct: 162 DVLVMELSSFQLMGIEAF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEK 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277
             I LN++    + L  K+ A     +  F   +  D            +++E   ++ +
Sbjct: 218 DVIVLNFNQDLAKELATKTKA----RVLPFSTIEKVD-----------GAYLEDGLLKFK 262

Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           G++ M     G+ G H  +N L T+ +  +   + +   + LS F
Sbjct: 263 GEAVMRADELGVPGSHNVENALATIAVAKVRGVENEVIKETLSAF 307


>gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M23]
 gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23]
 gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 491

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 149/383 (38%), Gaps = 45/383 (11%)

Query: 22  VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           +PQ     ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         
Sbjct: 10  IPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGV 69

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132
           S+   +I V G+   LGA+     A R     S+A T++ +TG+ GKT+T ++L  A   
Sbjct: 70  SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 124

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH-- 185
           +    A  G+    +GV L    +P      +       LG++R      +   V  H  
Sbjct: 125 LGVRSATCGT----LGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180

Query: 186 -----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                      +AV T +   HL     +E    AKA +F   +    + +N DD  F L
Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAV-INVDD-LFGL 238

Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                 A G++ +  S     +AD   +      +    ++ +      V    +G    
Sbjct: 239 RLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNV 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L   G++  L   +      LS   P  GR  R      Q    +    Y   P ++
Sbjct: 299 DNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDAL 355

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
                VLS +S H  GR I V G
Sbjct: 356 G---QVLSSLSSHVCGRLICVFG 375


>gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 155/398 (38%), Gaps = 50/398 (12%)

Query: 9   DLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL+     H++   P       G++ID+  + P   F A+ G    G   +  AV +GA 
Sbjct: 5   DLIAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAV 64

Query: 67  LVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGK 119
            V+V+     + A++G +   V  V DV  A     VA+R   +      +IAITG+ GK
Sbjct: 65  AVLVDQQAPTLPAAMGDVC--VLRVPDVRKA--AAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF----------- 162
           T+   M    L   ++     IG+  + IG     +P ++   P   D            
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 163 -GIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            G   L  + +G    LTH +      + V T +   HL +   +E    AK  +F+GL 
Sbjct: 181 CGSVVLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLC 237

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +   +  N DD     + A    L    + ++    +AD++       +  S   +   G
Sbjct: 238 RCAVV--NADDP----VGAGIRKLMPGAVTTYALDGDADYRASDLTVDASGSRFTLHHDG 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G     N L T+    +L   +   + AL       GR +R +  ++ G 
Sbjct: 292 RKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQ--ISGGT 349

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             ++D  Y  +P S+     VL+ I     GR I V G
Sbjct: 350 SVIVD--YAHSPDSLN---KVLTTIRGFARGRVITVFG 382


>gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 494

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 59/336 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I+ DSR+      F A KG   D H F    + +G  ++VV +              
Sbjct: 23  VTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQ------------ 70

Query: 87  GVDDVLGALNKLAVAARLR--------------SKATIIAITGSVGKTTTKEMLTIALSS 132
              +V G + ++ V+  LR               + T   +TG+ GKT+   M+ +    
Sbjct: 71  ---EVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRK 127

Query: 133 IKKTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGE 174
           + K  A +G+    I           P T++   ++   VD G   + M   SH   LG 
Sbjct: 128 LHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGR 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS 230
           +R     V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD+
Sbjct: 188 LRG----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDA 243

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F E L     ++    I+++G   +A F+     +  +    E+     +  V    +G 
Sbjct: 244 FSEYLA----SVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGK 299

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               N++  +  V       +T ++A+    P EGR
Sbjct: 300 FNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGR 335


>gi|326202129|ref|ZP_08191999.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987924|gb|EGD48750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 465

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 14/126 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMP--VDVDFGI 164
           A + A+TGS GKTTT  ++   LS  ++ Y C +G    +IG+PL L+++    + D  +
Sbjct: 117 AQVFAVTGSDGKTTTTTLIYKILS--EEGYNCWLGG---NIGIPL-LSKIDEVAETDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  IR       P +AV+T ++P HL     ++E   AK  IF   ++   + 
Sbjct: 171 LELSSFQLMTIRDC-----PSVAVVTNLSPNHLDVHKSLQEYIDAKKNIFIYQKENEKLV 225

Query: 225 LNYDDS 230
           LNYD+ 
Sbjct: 226 LNYDNE 231


>gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 516

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 144/392 (36%), Gaps = 76/392 (19%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIG 79
           V  I+ DSR +     F AI G   DG  F+  A+  GA  +V           +   + 
Sbjct: 43  VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102

Query: 80  SLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +  I V    + L AL +      +  LR    ++ +TG+ GKT+T  ML      +   
Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKHLR----LVGVTGTNGKTSTATMLHRLFERLGYK 158

Query: 137 YACIGSYNNHIGV-----------PLTLARMPVDVDFGIFELGMSH-------------- 171
              IG+  N IG            P+ LA++     + + + G SH              
Sbjct: 159 SGLIGTVENRIGNEIIPATHTTPDPIALAQLL----YRMQQAGCSHVFMEVSSHAAHQRR 214

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS- 230
           +G + F+  L        T +   HL     ++E   AK   F+ L       +N DD  
Sbjct: 215 IGSLEFVGGL-------FTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPNAFALVNADDRN 267

Query: 231 ---FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                +   AK +  G+K+   F  K    DF+  +        W+ +            
Sbjct: 268 GSVMLQNTSAKKYTYGLKSFADFKAKVVEGDFRGTELLLNDRSVWIPL------------ 315

Query: 287 GIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +G   A N+ +      +L  D+  D  ++ALS     EG   R+      G   ++D 
Sbjct: 316 -VGAFNAYNITLVYAAARLLLPDLEQDVLLQALSTIETAEG---RFEVISEGGRIGIVD- 370

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P ++   +  +  + P G GR I V+G
Sbjct: 371 -YAHTPDALIKVLETIRPLVPQG-GRVITVVG 400


>gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
 gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
          Length = 492

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 152/373 (40%), Gaps = 40/373 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G +ID+R +AP   F A +G   +G DFI  A++ GA  VV         G+L I   
Sbjct: 22  VTGFAIDNRKVAPGTVFGAFQGAQVNGEDFIPAAIEAGAVAVVARAAAKVE-GALHI--- 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
             D       +LA      +   I+A+TG+ GKT+  EM         +  A IG+    
Sbjct: 78  ASDIPRKCFAELAAGFFTPAPEHIVAVTGTNGKTSCVEMTRQIWRMSGERAASIGTLGVT 137

Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
             +  +   LT    P  V F     G+   G++H+       G  ++    V    A  
Sbjct: 138 TPDESVSTGLT---TPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGVAVEAAGF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFE---LLKAKSHALG 243
           T  +  HL   + +E+  +AK  +F+ +   G    I++   +S +    +  AK   L 
Sbjct: 195 TNFSRDHLDYHADMEDYFAAKMRLFDEVVSDGATAVIWMGAGESGWNARVVDHAKQRGLT 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T+   G+    D +L   +       + V+  G    +    IG +   N L++ G+ 
Sbjct: 255 VMTVGEQGE----DIRLTHREPTQLGQSLTVEHAGTERTINLPLIGAYQVSNALVSGGLA 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D      A++   P  GR +R   A + G    ID  Y   P +++AAI+ L   
Sbjct: 311 LATGIDASRVWDAVARLQPVRGRLERAVIAPS-GAPVYID--YAHTPDALEAAIAAL--- 364

Query: 364 SPHGEGRRIAVLG 376
            PH  GR I V G
Sbjct: 365 RPHVTGRLITVFG 377


>gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
 gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
          Length = 508

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 161/403 (39%), Gaps = 56/403 (13%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR ++    FFA+ G H++G  FI  A+Q+G+ ++V   D+       ++    V
Sbjct: 33  GLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDI--DFYDSNVTYIKV 90

Query: 89  D--DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           D  ++   ++  A         K  II +TG+ GK++    +   L S+      I +  
Sbjct: 91  DPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVF 150

Query: 145 NHIG------------------VPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHL-VRP 184
              G                  + L L++M   +V++ I E   SH  + R    L +  
Sbjct: 151 LEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIE-STSHGLDDRTSRLLDIEY 209

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALG 243
            +AV+T I+  HL     ++    AK  +F      G    +N DD+ F +         
Sbjct: 210 SVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHGGFGIINMDDNHFSVFMN-----S 264

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I   Y++  K++ ADF + K  +         Q+     E  H+ I Y    N+  +  +
Sbjct: 265 INRTYTYSLKNEKADFFISKINE---------QMGFTEFEFYHNKIKYAARVNLTGSFNV 315

Query: 303 VSILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            +++ A        +VD +     + + +   G+       Q F  ++D  Y   P +  
Sbjct: 316 ENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLIVD--YAHTPGAFL 373

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +  +++   + R I+V G   E   L +    ++A+  S
Sbjct: 374 KMFPIFKRLA---KKRLISVFGSAGERDILKRRLQGEIADEYS 413


>gi|163751825|ref|ZP_02159041.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
 gi|161328310|gb|EDP99471.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 34/294 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIA 129
           N ++VA+   L IPV    ++L  L       R R     +A+ G+ GKTTT  ++ ++ 
Sbjct: 94  NPELVAA-RKLRIPVVQRAEMLAEL------MRYRHG---VAVAGTHGKTTTTSLIASVY 143

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
             + +     IG   N  G   T AR+        + +  +   +  FL HL +P ++V+
Sbjct: 144 AQAGRDPTFVIGGLLNSAG---TNARL----GHSRYLIAEADESDASFL-HL-QPMVSVV 194

Query: 190 TTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T I   H+  + G  E++ S   +    L   G   +  DD     L  K   +G K I 
Sbjct: 195 TNIEADHMDTYGGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVIRELLPK---VGRK-IV 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           S+G S++AD Q   + Q   +S   ++ +G   +EV+ +  G H   N L  + + +   
Sbjct: 251 SYGFSEDADIQALNFVQQGYRSHFTLRREGVADIEVMVNLPGEHNVLNALAAIAVATEDE 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAI 357
            + +  ++AL+ F   EG G+R++     A ++G   L+D+ Y  +P+ + A I
Sbjct: 311 IEDEAIVRALAEF---EGIGRRFQQLGSFATSKGEVMLVDD-YGHHPSEVTATI 360


>gi|212213338|ref|YP_002304274.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuG_Q212]
 gi|226706320|sp|B6J2Q2|MURC_COXB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212011748|gb|ACJ19129.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 465

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           L +  + A L  +   IA+ G+ GKTTT  ML+ A   +++  T+   G  NN       
Sbjct: 95  LKRGEMLANLMKEYQSIAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNN------- 147

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211
            ++ P  V  G + +  +   +  FL   + P IAV+T I   HLS + G    +     
Sbjct: 148 -SQTPARVGNGHYFIAEADESDASFL--FMHPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +  E   + G + L  DD     +      L  + + ++G S +A +++  + Q   QS 
Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIA----PLLSRRVITYGFSSDAQYRVVDYCQQGIQSL 260

Query: 272 MEVQ-LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK- 328
            ++   Q K+   V   + G H A N      I  ++  +    +K+L+ F   + R   
Sbjct: 261 FQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTI 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMK 354
           R    L +G   LI E Y  +P  +K
Sbjct: 321 RGEMILPKG-NALIIEDYGHHPNEIK 345


>gi|297250431|ref|ZP_06934038.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
 gi|296838889|gb|EFH22827.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
          Length = 469

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPD---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 448 LNMGAGSIN--RVPAALLE 464


>gi|153207176|ref|ZP_01945955.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918361|ref|ZP_02218447.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212219386|ref|YP_002306173.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuK_Q154]
 gi|226706319|sp|B6J5K2|MURC_COXB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120576837|gb|EAX33461.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917867|gb|EDR36471.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212013648|gb|ACJ21028.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 465

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           L +  + A L  +   IA+ G+ GKTTT  ML+ A   +++  T+   G  NN       
Sbjct: 95  LKRGEMLANLMKEYQSIAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNN------- 147

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211
            ++ P  V  G + +  +   +  FL   + P IAV+T I   HLS + G    +     
Sbjct: 148 -SQTPARVGNGHYFIAEADESDASFL--FMHPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +  E   + G + L  DD     +      L  + + ++G S +A +++  + Q   QS 
Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIA----PLLSRRVITYGFSSDAQYRVVDYCQQGIQSL 260

Query: 272 MEVQ-LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK- 328
            ++   Q K+   V   + G H A N      I  ++  +    +K+L+ F   + R   
Sbjct: 261 FQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVRMNEPALLKSLADFPGVDRRFTI 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMK 354
           R    L +G   LI E Y  +P  +K
Sbjct: 321 RGEMILPKG-NALIIEDYGHHPNEIK 345


>gi|75760821|ref|ZP_00740837.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899844|ref|YP_002448255.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228903207|ref|ZP_04067341.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|228941870|ref|ZP_04104416.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228967789|ref|ZP_04128805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974796|ref|ZP_04135361.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981390|ref|ZP_04141690.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|226711859|sp|B7IKV4|MURC_BACC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74491675|gb|EAO54875.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540867|gb|ACK93261.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228778590|gb|EEM26857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|228784924|gb|EEM32938.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228791943|gb|EEM39529.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228817804|gb|EEM63883.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228856489|gb|EEN01015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|326942473|gb|AEA18369.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 148/371 (39%), Gaps = 67/371 (18%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGA 65
           HD+   +QG       + F    +++ RSI+  P                F  + V++G 
Sbjct: 22  HDMKHTVQGSD---YEKRFFTQTALEKRSISILP----------------FDKNNVEEGQ 62

Query: 66  GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++  N      + + +   L+IPV      LG          L S+ T +A+TG+ GKT
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------DLMSQYTSVAVTGAHGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178
           +T  +L   +     T   IG    H GV         +  + +FE       E R  FL
Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           ++   P  A++T I   H   F+ I ++ SA  E+   L+    I    DD   + ++AK
Sbjct: 160 SY--NPDYAIMTNIDFDHPDYFADINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297
              +     Y FG  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   EG  +R+      G   +ID+ Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATI 324

Query: 358 SVLSQISPHGE 368
               Q  P  E
Sbjct: 325 EAARQKHPERE 335


>gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 489

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR +   + F A+KG  +D   F+  ++  GA  VV+ TD+     S+    +
Sbjct: 18  VKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSIQWQNN 77

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV     +   L+ LA         K T++ +TG+ GKTT  ++L    +      A +
Sbjct: 78  VPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGHKAAVM 137

Query: 141 GSYNNHIGVPLTLAR----MPVDV-----DF-----GIFELGMSHLGEIRFLTHLVRPHI 186
           G+  N +   +  A+      V+V     DF     G   + +S  G ++     ++   
Sbjct: 138 GTIGNGLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEALKFKA 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           A+ T ++  HL     +E+ A AK   F  L     I LN DD
Sbjct: 198 AIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQI-LNADD 239


>gi|288904810|ref|YP_003430032.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
 gi|288731536|emb|CBI13091.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
          Length = 451

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A + S A II ITGS GKTTT  M+   L++  K+    G  + +IG P + +A+   D 
Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T +  PHIAVIT + P H+      EE  +AK  I + +   
Sbjct: 162 DILVMELSSFQL----MGTDIFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  K+ A
Sbjct: 218 DFVVLNFNQDLAKELAQKTVA 238


>gi|189183854|ref|YP_001937639.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180625|dbj|BAG40405.1| UDP-N-acetylmuramate-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 502

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 149/365 (40%), Gaps = 47/365 (12%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            GAG+VV+       N +  A+I S  IP+    ++L  L        +RSK  I AI+G
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAI-SAKIPIISRAEMLAEL--------MRSKIAI-AISG 132

Query: 116 SVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           S GKTTT  ++     +  +  T    G  NN      T A +  D D+ I E   S   
Sbjct: 133 SHGKTTTTALIACIFEACGLHPTVITGGIMNN----KATNAYLG-DGDYFIAEADESDAT 187

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I+     +   IAVIT I   HL  +   + + SA  +    L   G      DD   +
Sbjct: 188 FIK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQ 242

Query: 234 LLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVH 285
            L AK   +  + I ++G  SKNA  Q       +  S  +V+++  +        +V  
Sbjct: 243 NLIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTL 299

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L  + I   L  D++        F   +G  +R+         T+ID+ 
Sbjct: 300 PALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD- 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISH 403
           Y  +PA + A I +   I+   +GR IAV        + +L   F      V  LY IS 
Sbjct: 356 YAHHPAEIIATIDIARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQLY-ISQ 414

Query: 404 VWLSG 408
           ++ +G
Sbjct: 415 IYDAG 419


>gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem]
          Length = 461

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 136/354 (38%), Gaps = 40/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M+   LS   I  T   IG   N +G    L +       G F + 
Sbjct: 108 IAVAGTHGKTTTTSMVATILSKGGIDPTI-VIGGRLNSLGTNARLGQ-------GQFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL  L+ P IAV+T I   HL  +SGIEEI     E    +   G   L  D
Sbjct: 160 EADESDGSFL--LLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           +     +  +      K   S+G S  ADF+    K     +      +G  + E+    
Sbjct: 218 NGNIADVLPRVK----KRFTSYGMSAQADFRATDVKLSGFSTSFVAHHKGVRLGEITFSM 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L    +T  +  + F    G G+R+          ++D+ Y 
Sbjct: 274 PGAHNVLNALAAIAVAMELDIPFETIQEGFAGFG---GVGRRFHLKGEANGIMVVDD-YG 329

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVL 396
            +P  +KA +                 PH    R +   ++ E  E  ++FH  D+  + 
Sbjct: 330 HHPTEIKATLGAAKAGFAENRLVVVFQPH----RYSRTKELFE--EFVKAFHDADVLILT 383

Query: 397 SLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +Y      + G    AL + + R     V +    D L   ++  L  GD+++
Sbjct: 384 DIYPAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERVLAPGDILL 437


>gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630]
 gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-66c26]
 gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP
           107932]
 gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-63q42]
 gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC
           43255]
 gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-76w55]
 gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-97b34]
 gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-37x79]
 gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
 gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-32g58]
 gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           difficile]
 gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
          Length = 450

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/388 (19%), Positives = 162/388 (41%), Gaps = 59/388 (15%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+         YA +         P  L    + +  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSTIFE-----YADLD--------PTILVGGNLSMIGG 144

Query: 164 IFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             ++G S+     F+T             P I+++  +   HL  FSGI+EI ++  +  
Sbjct: 145 NVKIGNSN----HFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFG 200

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWME 273
           + L   G   +N DD   + +     A    TI  +G+  + D  ++      S      
Sbjct: 201 KLLPPEGYFIINGDDENIDDILYDVKA----TIIKYGRDSDNDAVIKDIHFDNSGHGIFR 256

Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++ +G+ +      + G H   N    +    +   D++T  K + ++   +G G+R+  
Sbjct: 257 IEYEGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIY---KGVGRRFET 313

Query: 333 ALNQGFF--TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEM 381
              +G++   L+ + Y  +P  +KA ++   ++          PH   R  ++L      
Sbjct: 314 ---KGYYKNALVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLL------ 364

Query: 382 GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439
           GE S++F+  D   +  +Y          H   L + L   ++   Y +  + +  +++ 
Sbjct: 365 GEFSEAFYAADKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRE 424

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++ D D+V+  ++ +   Y++ +LL+E+
Sbjct: 425 NVKDNDLVI--TAGAGPIYKVADLLVEK 450


>gi|313890708|ref|ZP_07824333.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120809|gb|EFR43923.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 461

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 19/146 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---LTLARMPV 158
           A L S+A IIAITGS GKTTT  M+   L+   ++    G    +IG P   + L   P 
Sbjct: 115 AYLVSEAPIIAITGSNGKTTTTTMIADVLNHGGQSALLSG----NIGYPASEVVLKAEPK 170

Query: 159 D---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           D   ++   F+L    +G   F      PHIA+IT + P H+     +E   +AK  I +
Sbjct: 171 DRLVMELSSFQL----MGVDAF-----HPHIALITNLIPTHIDYHGSLENYVAAKWNIQQ 221

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA 241
            +     + LN D     +L +K+ A
Sbjct: 222 RMTNEDYVILNADQELTRVLASKTQA 247


>gi|300813921|ref|ZP_07094225.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511984|gb|EFK39180.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 261

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 34/255 (13%)

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALGIKTIYSFGKSKN 255
           F  IE I + K E+ E L + G    NYD+ + + L    K K++  GIK I        
Sbjct: 4   FKTIENIQNTKYELIEDLPEDGIAIFNYDNDYVKPLADKTKKKTYRYGIKDIEKL----- 58

Query: 256 ADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            D   +  +   + S   + ++G   +      +G H   N+L       +L  +++   
Sbjct: 59  -DVYAKDIRVNEKGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIK 117

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             +      E    R     +   + +ID+++N+NP   +AA+SV+ +     EG++I +
Sbjct: 118 NGIEKVKAVE---HRLNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKIII 171

Query: 375 LGDMCEMGELSQSFH----IDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSET 429
              M E+G + +  +    I++A+V       +V L G  + A +K AL   I  +++E 
Sbjct: 172 TPGMVELGAIEEEENYKIGIEIAKVC-----DYVILVGQKISAPIKRAL---IDNNFNED 223

Query: 430 MDGLFLFIQSSLVDG 444
                +F   SL DG
Sbjct: 224 R----IFTVKSLNDG 234


>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
           Glutamate (Murd) Ligase From Streptococcus Agalactiae To
           1.5a
          Length = 451

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ +I ITGS GKTTT    T  ++ +       G    +IG P + + +   D 
Sbjct: 106 AYLVSESQLIGITGSNGKTTT----TTXIAEVLNAGGQRGLLAGNIGFPASEVVQAANDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I      +
Sbjct: 162 DTLVXELSSFQLXGVKEF----RPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQNQXSSS 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L   + A    TI  F  ++  D    + KQ        +  +G++
Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265

Query: 281 MEVVHH-GI-GYHMAQNMLMTLGIVSI 305
           +  V   G+ G H  +N L T+ +  +
Sbjct: 266 IXSVDDIGVPGSHNVENALATIAVAKL 292


>gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 476

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 65/375 (17%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  M+++  A + +  T+   G       N H+G    L     + D  
Sbjct: 121 IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P I+++T I P H+  + G  +E+          L   G 
Sbjct: 181 FLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGL 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             L  DD   E+L      +G + + ++G S+NAD+++  ++Q   Q  +  +   G+ +
Sbjct: 226 AVLCADD---EVLMELVPLVG-RQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERI 281

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336
           +V+ +  G H A N    L +        D  + AL+ F   +G G+R+   L Q     
Sbjct: 282 DVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADF---QGAGRRFD-QLGQFIRPN 337

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  LSQ
Sbjct: 338 GKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 394

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQS 439
              +D   +L +Y      + G    A   AL RSI        +  S+T + L   +  
Sbjct: 395 ---VDALIMLDVYPAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-EQLGEVLDQ 446

Query: 440 SLVDGDVVVVKSSNS 454
            + DGD+++ + + S
Sbjct: 447 IIQDGDLILAQGAGS 461


>gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 458

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 26/223 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  +SR++ P + F AI     DGHD+I  A+  GA      T ++A  GS  +    V
Sbjct: 4   ALKTNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGA------TKIIAEHGSYKVETIIV 57

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSY 143
           +     L          L     +I +TG+ GKTTT  M    L  +KK  A    IG Y
Sbjct: 58  ESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFY 117

Query: 144 NNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                 P+      VD             V++ + E+    L + R   H +       T
Sbjct: 118 YGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRI--HGLEFDEVAFT 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            +   HL     +E  A+AK  +F          +N DD  ++
Sbjct: 176 NLTQDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQ 218


>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 485

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 151/366 (41%), Gaps = 38/366 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++    
Sbjct: 22  DGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKKVEM---KHNVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V+D+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG+   
Sbjct: 79  VEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IGTIEY 136

Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            IG          P +L  + +        +++ + E+  SH  EI  +  +V    A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD + + L      +    I S
Sbjct: 195 TNLTQDHLDYHITMENYFQAKRKLFLKLKDINNSVINIDDKYGKRL-YDEFIIDNPEIIS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G     D +        +  +++++ + +  +V    +G     N L  +GIV  +   
Sbjct: 254 YGID-GGDLE----GDYLDDGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGIVLKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I     G
Sbjct: 309 MEEILKRVSTIKAAPGRFEALDCG--QDYKVIVD--YAHTPDALVNVIVAARNIK---NG 361

Query: 370 RRIAVL 375
            RI  +
Sbjct: 362 NRIITI 367


>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
 gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
          Length = 486

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 145/377 (38%), Gaps = 57/377 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +     F  IKG   DGH +I  A +KGA + ++  D+        +    V+
Sbjct: 26  VEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKGARVFLIQDDVDFKEDCTYVK---VE 82

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YN 144
           D    + K+A         K  +I +TG+ GKT+    +   L +  K    IG+   ++
Sbjct: 83  DTRKTMAKVAANFCEHPADKFDVIGVTGTNGKTSITTFINEILRNCNKKVGLIGTIKIFD 142

Query: 145 NHIGVPLTLARMPVDVDF-GIFE------------------LGMSHLGEIRFLTHLVRPH 185
               VP + +  P  VD   IF+                  L +S + +  F        
Sbjct: 143 GDNEVP-SNSTTPESVDLQKIFKRMVDNGCDCCAMEVSSHSLELSRVDDTNF-------K 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241
           I + T + P HL     +E    AK ++F   + T    +N DD      +E +K     
Sbjct: 195 IGIFTNLTPDHLDFHKTLENYRKAKEKLFH--KTTQANIINVDDEGGRKIYEAIK----- 247

Query: 242 LGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            G+ T  Y++G   +ADF  +  K  +      +     + ++     G     N L  +
Sbjct: 248 -GLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTPNHTEDIFIPVPGKFTVYNTLAVI 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISV 359
               +L  D +  + +L       G   R+    N +G   ++D  Y   P +++   +V
Sbjct: 307 AACEMLGIDKEDYLNSL---RNTGGVAGRFETVPNDKGISVIVD--YAHTPDALE---NV 358

Query: 360 LSQISPHGEGRRIAVLG 376
           L+      EG  IAV G
Sbjct: 359 LNTAREFVEGDLIAVFG 375


>gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
 gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
          Length = 495

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 149/383 (38%), Gaps = 45/383 (11%)

Query: 22  VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           +PQ     ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         
Sbjct: 14  IPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGV 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132
           S+   +I V G+   LGA+     A R     S+A T++ +TG+ GKT+T ++L  A   
Sbjct: 74  SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH-- 185
           +    A  G+    +GV L    +P      +       LG++R      +   V  H  
Sbjct: 129 LGVRSATCGT----LGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 184

Query: 186 -----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                      +AV T +   HL     +E    AKA +F   +    + +N DD  F L
Sbjct: 185 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAV-INVDD-LFGL 242

Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                 A G++ +  S     +AD   +      +    ++ +      V    +G    
Sbjct: 243 RLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L   G++  L   +      LS   P  GR  R      Q    +    Y   P ++
Sbjct: 303 DNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDAL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
                VLS +S H  GR I V G
Sbjct: 360 G---QVLSSLSSHVCGRLICVFG 379


>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 464

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 41/290 (14%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +IPV G  D++  L        L      I +TG+ GKTT  E +       K  Y   G
Sbjct: 97  NIPVVGELDLVFGL--------LPDGVNTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAG 148

Query: 142 SYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
               ++G P  L+ +  D+  G   + EL    +    FL    +P IA+IT +   H+ 
Sbjct: 149 ----NVGTP--LSEIIYDIVTGSNLVLELSSYQIENSIFL----KPKIAMITNLTLDHID 198

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            ++ ++E  +AK  +F+  E   +I+ N DD + E    K+  L  K +     SK  DF
Sbjct: 199 RYANLDEYFNAKVHLFKNQENGYSIY-NKDDPYLE-KNIKNLTLKTKIL---NVSKRKDF 253

Query: 259 QL------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +      + + + +      + L   S++      G H  +N L     + + + +   
Sbjct: 254 SIAGVIENKIFVKDNLDFVKIIDLSDLSLK------GEHNIENALFVASSLYLSSVEPKH 307

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             KALS F   E R +R+    ++G  T I++S + NP S   A+    +
Sbjct: 308 IEKALSTFSGVEHRQERFYT--HKG-ITWINDSKSTNPESTIVALKTWGE 354


>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
 gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
          Length = 490

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLARCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRMIVVFG 378


>gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
 gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 159/380 (41%), Gaps = 38/380 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVF 86
           D++  A  EA  A+    + GH      +   A  VVV++ +      +A    L IPV 
Sbjct: 40  DAKESATAEALRALGATVHIGH--AAEHLAADATCVVVSSAIRADNPELARAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYN 144
              D L +L        LR     IA+ G+ GKTTT  ML ++LS +  + +YA  G  +
Sbjct: 98  HRSDALASLMD-----GLRP----IAVAGTHGKTTTTSMLAVSLSELGLRPSYAIGGDLD 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                P + A        G  E+ ++   E     H   P +A++  +   H +N++ ++
Sbjct: 149 ----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMD 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EI  +     + + K GT+ +N D      L  +  A G++ + ++G +++AD ++    
Sbjct: 199 EIYESFETFVDRIAKGGTLVVNADHEGARELTWRVTASGVRVV-TYGDAEDADVRVLSVA 257

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +S + V L G+ +       G H A N +  L     L    +    AL+ +    
Sbjct: 258 PQGLKSEVTVLLDGRQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAPALAAY---T 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G  +R +         +ID SY  +P  M A +  +   +  G+ R + V      +   
Sbjct: 315 GVKRRLQLKGEAAGVQVID-SYAHHPTEMTADLEAMRAAA--GDARILVVF--QPHLFSR 369

Query: 385 SQSFHIDLAEVLSLYNISHV 404
           +Q    ++ E L+L + S V
Sbjct: 370 TQELGKEMGEALALADGSLV 389


>gi|312863272|ref|ZP_07723510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
 gi|311100808|gb|EFQ59013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
          Length = 450

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L+   K+    G  + +IG P + +A+   + 
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTNQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        PHIAVIT + P H+      E   +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  +++A
Sbjct: 218 DFVILNFNQDLAKELATQTNA 238


>gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 452

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 45/301 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
             L  K T +AITGS GKT+T  +++  L S+K T   IG      GV           D
Sbjct: 98  GELIKKYTSVAITGSHGKTSTTGLMSHVLGSLKTTSYLIGD-GTGKGVE----------D 146

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
              F L      E  FL +   P  A+ T I   H   +  IEE+ +A  +    ++   
Sbjct: 147 GEYFVLEADEYRE-HFLAY--EPDYAIFTNIDFDHPDFYHNIEEVFAANRKFAHQVKN-- 201

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGK 279
            +    DD + + LK +        ++ +G   N DF +  +   + ++ S  +V +QGK
Sbjct: 202 KVIAYGDDPYLQKLKDEV------DVWYYGID-NDDFDIVAKDIVRNTKGSHFDVWVQGK 254

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  H  G H   N L  +G   +   D +   +AL+ F     +G + R   N+ F
Sbjct: 255 HYGNFSIHTFGQHSILNSLAVIGFCYLEGFDPEDVQEALTSF-----KGVKRR--FNERF 307

Query: 339 FT--LIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               +I + Y  +P+ +KA I          +V+S   PH   R +A+L    E  + S 
Sbjct: 308 VEDMVIVDDYAHHPSEIKATIDAARQQYPDKAVISVFQPHTYSRTLALLDQFAEALDKSD 367

Query: 387 S 387
           +
Sbjct: 368 A 368


>gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           8013]
          Length = 445

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGKKNGVVFIDDSKGTNVGATAAAITGLQN 343


>gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis N1568]
          Length = 445

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|300173070|ref|YP_003772236.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887449|emb|CBL91417.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 444

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 31/265 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+ G+ GKT+T  +L   L +I  T   IG      GVP +             +
Sbjct: 103 QTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGR-GVPNS-------------Q 148

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             ++   E R       P  A++T I   H   F  IE++ +A ++    ++K   IF  
Sbjct: 149 FFVAEADEYRRHFKDYAPDYAILTNIDFDHPDYFKNIEDVTNAFSDFANHVKK--AIFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD+    L+ K+      T+Y +G S +N DF      + ++ S   V  +G+++ E  
Sbjct: 207 GDDAHLRALRPKA------TVYYYGTSPENDDFVAENIHKSTQGSHFNVTFRGETLGEFS 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLID 343
               G H   N L  + +  +   D+D   + L  +     +G + R +  Q    T+ID
Sbjct: 261 VPLFGQHSILNALAVIAVAYMEKVDLDLIREYLMTY-----QGVKRRFSEKQIADITVID 315

Query: 344 ESYNANPASMKAAISVLSQISPHGE 368
           + Y  +P  + A +    Q  P+ +
Sbjct: 316 D-YAHHPTEIDATLDAARQKYPNKQ 339


>gi|255066169|ref|ZP_05318024.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
 gi|255049714|gb|EET45178.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
          Length = 469

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 145/361 (40%), Gaps = 44/361 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDAADIYATDIESVGAQMKFTVHVQMKGHEQAPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   + L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGF---EGVGRRFQKYGDMKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 V 448
           +
Sbjct: 448 L 448


>gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 129/333 (38%), Gaps = 52/333 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F A+ G H DGHD +  A++KGA ++V +  +      +++PV 
Sbjct: 25  VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNVPVI 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG+  
Sbjct: 80  YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 139

Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVR 183
                          + I    TLA M    D G+  + M        LG +  + +   
Sbjct: 140 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDY--- 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FE 233
             IAV T +   HL     + +   AKA +F  L       GT     LN DD     FE
Sbjct: 194 -DIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFE 252

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              A +H L      +FG   +A    +  +  S  +  ++ + G    V    IG    
Sbjct: 253 QYTA-AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNV 305

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            NML             D  IK+L      +GR
Sbjct: 306 YNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGR 338


>gi|325977740|ref|YP_004287456.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177668|emb|CBZ47712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 452

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A + S A II ITGS GKTTT  M+   L++  K+    G  + +IG P + +A+   D 
Sbjct: 107 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 162

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIAVIT + P H+      EE  +AK  I + +   
Sbjct: 163 DILVMELSSFQL----MGTDTFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 218

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  K+ A
Sbjct: 219 DFVVLNFNQDLAKELAQKTAA 239


>gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M6190]
 gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis ES14902]
          Length = 445

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
 gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
          Length = 450

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L+   K+    G  + +IG P + +A+     
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTAQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        PHIAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIDSF----HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNQMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  ++ A
Sbjct: 218 DFVVLNFNQDLAKELATQTKA 238


>gi|254673375|emb|CBA08647.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha275]
          Length = 429

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 69  IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 120

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 121 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 178

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 179 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 234

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 235 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 291

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 292 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 347

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 348 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 407

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 408 LNMGAGSIN--RVPAALLE 424


>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
 gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
          Length = 440

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVGG---NIGVP-ALDLISPDVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG  + A F L     R++     +++M   E+ L     
Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLVARNEAFMACAELSL----- 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419


>gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans
           CH34]
 gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans
           CH34]
          Length = 471

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 149/369 (40%), Gaps = 43/369 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P + VIT I   H+  +      +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLNLF--PVMEVITNIDADHMDTYGHDFARLKQAFVEFTQRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---M 281
           DD +  E+L   S     K +  +G +++A  +    +    Q    V  QL G +   +
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRQLNGHAEPPL 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338
           ++V +  G H  QN L  + I + L     + +KAL  FH    R +RY         G 
Sbjct: 273 DIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHGVGRRFQRYGEVATPDGSGT 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTL+D+ Y  +P  M A ++      P    RR+ +             F  D  +VL  
Sbjct: 333 FTLVDD-YGHHPVEMAATLAAARGAFPD---RRLVLAFQPHRFTRTRDCFE-DFVKVLGT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +   D  AL R++ V       + E ++ +   I +++  GDVV
Sbjct: 388 VDALLLAEVYAAGESPIVAADGRALTRALRVANKVEPVFVEQIEDMPQAILNAVRPGDVV 447

Query: 448 VVKSSNSCG 456
           V   + S G
Sbjct: 448 VTMGAGSIG 456


>gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 155/398 (38%), Gaps = 50/398 (12%)

Query: 9   DLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL+     H++   P       G++ID+  + P   F A+ G    G   +  AV +GA 
Sbjct: 5   DLMAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAV 64

Query: 67  LVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGK 119
            V+V+     + A++G +   V  V DV  A     VA+R   +      +IAITG+ GK
Sbjct: 65  AVLVDQQAPTLPAAMGDVC--VLRVPDVRKA--AAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF----------- 162
           T+   M    L   ++     IG+  + IG     +P ++   P   D            
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 163 -GIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            G   L  + +G    LTH +      + V T +   HL +   +E    AK  +F+GL 
Sbjct: 181 CGSVVLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLC 237

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +   +  N DD     + A    L    + ++    +AD++       +  S   +   G
Sbjct: 238 RRAVV--NADDP----VGAGIRKLMPGAVTTYALDGDADYRASDLTVDASGSRFTLHHDG 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G     N L T+    +L   +   + AL       GR +R +  ++ G 
Sbjct: 292 RKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQ--ISGGT 349

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             ++D  Y  +P S+     VL+ I     GR I V G
Sbjct: 350 SVIVD--YAHSPDSLN---KVLTTIRGFARGRVITVFG 382


>gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M644/93/1]
 gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M13/05/1]
          Length = 488

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLARCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRMIVVFG 376


>gi|322517040|ref|ZP_08069927.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124387|gb|EFX95889.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
          Length = 450

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L+   K+    G  + +IG P + +A+   + 
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNYGGKS----GVLSGNIGFPASEVAQSVTNQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        PHIAVIT + P H+      E   +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  +++A
Sbjct: 218 DFVILNFNQDLAKELATQTNA 238


>gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
 gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
          Length = 493

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 21/207 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +++DSR+I   + F A+ G   DG  FI  A+ +GA  V+V+TD +   G +     GV 
Sbjct: 23  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDKIDEQGKVIATEQGVQ 82

Query: 90  DVLGAL-NKLAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                L  +++  A +R          I+ ITG+ GKT+T ++    ++ ++   A +G+
Sbjct: 83  IYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGKAAVMGT 142

Query: 143 YNNHIGVPL-----------TLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAV 188
             N +   L           TL R   +  D G+    M  S  G ++     V   +AV
Sbjct: 143 LGNGLWGELVDSGNTTADAITLMRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAV 202

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE 215
            T +   HL     +E  A AK  +F 
Sbjct: 203 FTNLTRDHLDYHGDMENYAEAKQMLFR 229


>gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 505

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 145/371 (39%), Gaps = 42/371 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ISIDSR +     F  ++G    G +F   A ++GA  V+ +      +  L+IP   V 
Sbjct: 36  ISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSE----RVDDLAIPQLIVK 91

Query: 90  DVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS--YN 144
           D  G    LA A       SK  +I +TG+ GK+TT  ++   L +       IG+  YN
Sbjct: 92  DA-GEACGLASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKCGLIGTIVYN 150

Query: 145 N---HIGVPLTLARMP---------VD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   H     T  + P         VD      + E     + + R    L     AV T
Sbjct: 151 DGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCLY--DRAVFT 208

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTI 247
            + P HL     +E    AK ++F + +       +N DD + E +  +   H LG    
Sbjct: 209 NLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKIANEFAPHVLG---- 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSME-VVHHGIGYHMAQNMLMTLGIVSI 305
           +S  +  +  F     +       M++    G ++E V    +G +   N L    +   
Sbjct: 265 FSLRQKADNAFYGSIRRSSIRGIIMDISFPDGSTLENVTLPLLGEYNVLNALAASSVAWS 324

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +   K L    P  GR +RY   +  G   +ID  Y   P +++    VLS + P
Sbjct: 325 LDFDAEVIRKGLENCPPVPGRLERY--FVEDGPVCIID--YAHTPDALE---KVLSTVKP 377

Query: 366 HGEGRRIAVLG 376
              GR   V G
Sbjct: 378 LCSGRVWLVFG 388


>gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           R]
 gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum]
 gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 38/337 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140
           IPV    D+LG          L   +T + I G+ GKT+T  M  +A+ +  +  ++A  
Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N          +   +   G  E+ ++   E        +P++AV+T + P HL  F
Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259
              E       +    +   G + +  +D     L  +S   GIKT+ Y    +  A  +
Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263

Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +         +  +E +   + + G+ + V+    G HM  N    L    ++  DVD  
Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323

Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAISVL-SQISPHGE 368
           ++ LS F    G  +R+    A+  G F    I + Y  +P  + A +S   +++   G+
Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           GR I        +   +  F  + AE LSL + + V 
Sbjct: 381 GRVIVAF--QPHLYSRTMEFQKEFAEALSLADAAVVL 415


>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
 gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
          Length = 445

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|294815699|ref|ZP_06774342.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328298|gb|EFG09941.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 529

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 37/288 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYA 138
           LS+PV    D L         A L +    IA+ G+ GKTTT  ML +AL +  +  +YA
Sbjct: 151 LSVPVVHRSDAL---------ASLMTGLRAIAVAGTHGKTTTTSMLAVALGALGLDPSYA 201

Query: 139 CIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             G       N H G          D D  + E   S     ++      P +A++  + 
Sbjct: 202 IGGDLAGPGSNAHHG----------DGDIFVAEADESDRSFQKYA-----PEVAIVLNVE 246

Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             H +N++ ++EI  +  EIF G +   GT+ +  D      L ++        I ++G+
Sbjct: 247 LDHHANYASMDEIYESF-EIFAGRIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGE 305

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ AD ++++       S + V L G+ +       G H A N +  L   + L   VD 
Sbjct: 306 SEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDE 365

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              AL  +    G G+R +     G   +ID SY  +P  M A +  +
Sbjct: 366 LATALGAY---TGVGRRLQLKGEAGGVQVID-SYAHHPTEMTADLEAM 409


>gi|192359638|ref|YP_001983384.1| UDP-N-acetylmuramate--L-alanine ligase [Cellvibrio japonicus
           Ueda107]
 gi|190685803|gb|ACE83481.1| UDP-N-acetylmuramate--alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 185/428 (43%), Gaps = 73/428 (17%)

Query: 63  KGAGLVV----VNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV    VN      +G+  L IPV    ++LG L       R R     IA+ G+
Sbjct: 74  QGADVVVNSSAVNNTNPEVVGARELRIPVVRRAEMLGEL------MRYRHG---IAVAGT 124

Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +L   +A + +  T+  IG   N  G    L           + +  +   +
Sbjct: 125 HGKTTTTSLLASILAAADLDPTF-IIGGLVNSTGTNAQLG-------GSRYLVAEADESD 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             FL HL +P +A++T I   H+  + G           F  L+KT   FL ++  F+ L
Sbjct: 177 ASFL-HL-QPMVAIVTNIDADHMETYGG----------DFSRLKKTFVEFL-HNLPFYGL 223

Query: 235 LKAKSHALGI--------KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                    I        + I ++G +++ DF+    +Q    S  +V L+  + E +H 
Sbjct: 224 AVVCGEDPVIRDIIPDVARPILTYGFNEHCDFRATNIRQDKMSSEFDV-LRPGNPEPLHI 282

Query: 287 GIGYHMAQNMLMTLGIVSILTAD--VDTAIKA-LSVFHPKEGRGKRYRCALN----QGFF 339
            +      N+L    ++++ T +   D+AI+A L+ F   +G G+R++   N     G  
Sbjct: 283 RLNIPGIHNVLNATAVIAVATDEGISDSAIQAGLANF---QGVGRRFQVYGNFPVGDGST 339

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  EVLS  
Sbjct: 340 MLVDD-YGHHPREVAAVIKAVRDGWPE---RRLVMVYQPHRFTR-TRDLYEDFVEVLSTV 394

Query: 400 N---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +   +  V+ +G   +   D+  L RSI         + ET+DG+   I+  +  GD+V+
Sbjct: 395 DALVMLEVYSAGEEPIPGADSRHLCRSIRARGVIEPVFVETVDGVPDVIKDLVRAGDIVI 454

Query: 449 VKSSNSCG 456
            + + + G
Sbjct: 455 TQGAGNVG 462


>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 491

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 146/374 (39%), Gaps = 42/374 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR + P   F  I G   DGH F   A + GA  ++    +      +++PV 
Sbjct: 23  IDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELGAVAIIAEKTV-----DVTVPVI 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            ++ ITG+ GKTT   ++   +    +    IG+  
Sbjct: 78  YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137

Query: 145 NHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG  +               T   M ++ V   + E+    L + R   +     +AV
Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHAL 242
              ++  HL     +EE A AK+ +F  L             +N DD+    ++  + A 
Sbjct: 196 FMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKVAVINIDDAESSRMQTATAA- 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG  K ADF+    K  S  S  +++    +  +    IG     N+L  +  
Sbjct: 255 ---HVITFGIKKQADFRASNIKIASHGSTFDLRTPVGNFTLKIKMIGNFSVYNVLAAIAT 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++ AI  +      +GR +    +  Q F  ++D  Y+  P S+   ++VL  
Sbjct: 312 SFALKIPINNAIATVEDIPGVKGRFE--LVSAGQDFPVIVD--YSHTPDSL---LNVLQT 364

Query: 363 ISPHGEGRRIAVLG 376
           I    E R   ++G
Sbjct: 365 IDEFAEKRVFVIVG 378


>gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 325

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DS  + P + F  + G H DG   I  A+ KGA  V    +    +     P+
Sbjct: 17  LIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDAPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                IAV T ++  HL     +E  A+AKA++F   +    + +N DD F   L  +  
Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRV-INLDDDFGRRLAGEEQ 246


>gi|29653489|ref|NP_819181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161830535|ref|YP_001596099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii RSA 331]
 gi|212213341|ref|YP_002304277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuG_Q212]
 gi|62900583|sp|Q83F20|MURD_COXBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082877|sp|A9NA40|MURD_COXBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711904|sp|B6J2Q5|MURD_COXB2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29540751|gb|AAO89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161762402|gb|ABX78044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 331]
 gi|212011751|gb|ACJ19132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuG_Q212]
          Length = 442

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 54/361 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GKTT   ++ + + +  +  +  G    +IG P+ L ++  + D+ + EL  
Sbjct: 108 IIAITGSNGKTTVTTVVGLMMKAAGRNVSVCG----NIGEPV-LEQITPEPDYYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  +R   A I  I+  H++ ++ +++   AK  I             Y D
Sbjct: 163 FQLE----TTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRI-------------YTD 205

Query: 230 SFFELLKAKS-----HALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSM 281
            F  ++ A       H    K   SFG +  ADF L +  Q +    Q  + + +Q   +
Sbjct: 206 CFIPIVNADEPEIWRHLPFNKKPLSFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKL 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              HH       QN L  L + +     ++  +  L  F      G R+RC   + +  +
Sbjct: 266 NARHH------LQNALAALALGTAAKIPIENMLHVLRDFS-----GIRHRCQWVRKYKEI 314

Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + +AAI  L Q +   +G+ I + G   +  + S      L +V+  Y
Sbjct: 315 DYYNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFS-----PLKDVVKRY 366

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +  V L G     L+  L     + ++++M+        +   GD+V++  S +C  + 
Sbjct: 367 -VKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL--SPACASFD 423

Query: 460 L 460
           +
Sbjct: 424 M 424


>gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 495

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 10  LLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L++  +G  I I+    Q   + +  ++++I     F  IKG  +D HD I   V++GA 
Sbjct: 3   LIENAEGLDIEIISGELQDEFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            VVV  D    I    I V  V D   AL +L+ A  +    K  II ITG+ GKTT+  
Sbjct: 63  AVVVQKD----IKRDDICVIKVSDTRVALARLSAAYFSHPAKKMKIIGITGTKGKTTSSY 118

Query: 125 ML 126
           ML
Sbjct: 119 ML 120


>gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 514

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 155/392 (39%), Gaps = 40/392 (10%)

Query: 19  IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +GI+P        +N IS +S+ +     F  + G + DG  F + A++ GA   ++ + 
Sbjct: 13  VGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGSA 72

Query: 74  MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129
               IGS+    +  ++D L  +    VA    R   K  +I +TG+ GKTT   +L   
Sbjct: 73  AKERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132

Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173
           L  + K  A  G+ +N   G                    A +  + +F I E+    + 
Sbjct: 133 LKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230
           + R          A+ T +   HL   S +E     K ++F      EK G   LN+DD 
Sbjct: 193 QKRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGISVLNHDDH 250

Query: 231 FFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287
           +   L +  +  +  + T  +  + +N DF     K+ +E  S        + +++    
Sbjct: 251 WISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQLFVPL 310

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---CALNQGFFTLIDE 344
           +G     N +  + I+  L   +    K +  F    GR ++ +     +++   T+I +
Sbjct: 311 VGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSRSLPTVIVD 370

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P  +K    VL  I    EG+ I V G
Sbjct: 371 -YAHTPDGLK---KVLQSIKKLCEGKLITVFG 398


>gi|154706319|ref|YP_001425285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii Dugway 5J108-111]
 gi|189082876|sp|A9KER6|MURD_COXBN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154355605|gb|ABS77067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           Dugway 5J108-111]
          Length = 442

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 54/361 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GKTT   ++ + + +  +  +  G    +IG P+ L ++  + D+ + EL  
Sbjct: 108 IIAITGSNGKTTVTTVVGLMMKAAGRNVSVCG----NIGEPV-LEQITPEPDYYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  +R   A I  I+  H++ ++ +++   AK  I             Y D
Sbjct: 163 FQLE----TTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRI-------------YTD 205

Query: 230 SFFELLKAKS-----HALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSM 281
            F  ++ A       H    K   SFG +  ADF L +  Q +    Q  + + +Q   +
Sbjct: 206 CFIPIVNADEPEIWRHLPFNKKPLSFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKL 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              HH       QN L  L + +     ++  +  L  F      G R+RC   + +  +
Sbjct: 266 NARHH------LQNALAALALGTAAKIPIENMLHVLRDFS-----GIRHRCQWVRKYKEI 314

Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + +AAI  L Q +   +G+ I + G   +  + S      L +V+  Y
Sbjct: 315 DYYNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFS-----PLKDVVKRY 366

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +  V L G     L+  L     + ++++M+        +   GD+V++  S +C  + 
Sbjct: 367 -VKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL--SPACASFD 423

Query: 460 L 460
           +
Sbjct: 424 M 424


>gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
 gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
          Length = 474

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV+G          + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +
Sbjct: 95  VPVWG---------DVELAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAV 145

Query: 141 GSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           G    +IGV L    LA  P DV     EL    L         VRPH A +  +AP HL
Sbjct: 146 G----NIGVSLLDAVLAEEPYDVL--AVELSSYQL----HWAPSVRPHSAAVLNLAPDHL 195

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNA 256
                +   A+ K  I+EG  +   ++   D +  +L++A     G + I ++ G  + +
Sbjct: 196 DWHGSMAAYAADKGRIYEG-NQVACVYNAADPATEKLVRAADVEEGCRAIGFTLGTPRPS 254

Query: 257 D 257
           +
Sbjct: 255 E 255


>gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 961-5945]
 gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis G2136]
          Length = 445

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPRNELLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGKKNGVVFIDDSKGTNVGATAAAITGLQN 343


>gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6578]
          Length = 496

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 106/280 (37%), Gaps = 26/280 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L AI+   +       V  ++ DSR +     FFA+ G H DGH F+  A+++GA  VV
Sbjct: 1   MLDAIKPEEVRGEGDPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVV 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              ++ +    +            +               +I +TG+ GK++T   +   
Sbjct: 61  HERELPSYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIYQL 120

Query: 130 LSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDF------GIFELGMSHLGEIRFLTH 180
           L +      CI +     G    P  L +   +  F       + E G +H   +   +H
Sbjct: 121 LRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTH-AVVEATSH 179

Query: 181 LVRPHIA----------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + P  A          V+T I   H+      E+    K  +F GL + G   LN DD 
Sbjct: 180 GLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEEGKAVLNLDDP 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
               L  ++ A G+   Y  G  + A    R W +  E+S
Sbjct: 240 SSGFLAERTRA-GVWG-YGLGAREGA----RLWAEVREES 273


>gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 487

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 149/366 (40%), Gaps = 42/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 132 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 183

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 184 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 241

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEV 283
           DD +  E+L   S     K I  +G ++ AD  +R    C+    M     +     +++
Sbjct: 242 DDPNVREILPFVS-----KPIIRYGFAQEAD--VRATHVCARDGRMHFTVHRADAAPLDI 294

Query: 284 VHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           V +  G H  QN L  + I + L  AD D    AL+ F+    R +RY    L +G   L
Sbjct: 295 VLNLPGTHNVQNALAAIAIATELEVADADIQ-SALAEFNGVGRRFQRYGEVPLTRGGAYL 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           + + Y  +P  M A I+      P    RR+ ++            F  D  +VLS  + 
Sbjct: 354 LIDDYGHHPVEMAATIAAARGAFPD---RRLVLVFQPHRYTRTRDCFE-DFVKVLSTVDA 409

Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G   +   D  AL R+I V       + +T+D +   + + + DGDVV+  
Sbjct: 410 LVLTEVYAAGEAPIVAADGRALARAIRVAGRVEPVFVDTLDEIPDALAAMVADGDVVMTM 469

Query: 451 SSNSCG 456
            + S G
Sbjct: 470 GAGSIG 475


>gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
 gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 149/381 (39%), Gaps = 47/381 (12%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F A  G   DG  FI  A+ +GA ++V    +    G+ +  V  VD+   AL  LA AA
Sbjct: 37  FVAASGTAEDGARFIPDALARGATVIVAGPGIALPEGAKAALVT-VDEPRKALGLLA-AA 94

Query: 103 RL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---------YNNHIGVP 150
           R    R    ++ +TG+ GKTT   ++    ++  K    +G+          +  +  P
Sbjct: 95  RCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRWPGVTRDASLTTP 154

Query: 151 LTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             L       A      D  + E     L + R     +     V T +   HL     +
Sbjct: 155 DCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAG--LSFAAGVFTNLTQDHLDYHKDM 212

Query: 204 EEIASAKAEIF-EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQL- 260
           E   +AKA++F E L    T  LNYDD F   LLK    A+G    Y   K+     +L 
Sbjct: 213 ETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVG----YGLTKAPAGFARLL 268

Query: 261 ----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               R   +  +   +      ++ EV     G H A N+L  +G    L    +T   A
Sbjct: 269 VGGIRSHDR--DGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYET-FDA 325

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+  H   GR +R   A   G    +D  Y   P +++   +VL        GR  AV G
Sbjct: 326 LADCHGAPGRLERIPNA--SGLTVFVD--YAHTPDALE---NVLGAAREFTAGRLFAVFG 378

Query: 377 DMCEMGELSQSFHIDLAEVLS 397
             C  G+  ++    +AE +S
Sbjct: 379 --CG-GDRDRTKRPRMAEAVS 396


>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. 83/13]
 gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
 gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
          Length = 488

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 39/372 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD    L   A     +    ++A+TG+ GKT+         S  ++ +A  G    +
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVA-------SFTRQIWAYAGFPAAN 132

Query: 147 IGVPLTLARM-----------PVDVDFGIFEL---GMSHLG--------EIRFLTHLVRP 184
           IG     + M           PV++   + EL   G++H          + R L   VR 
Sbjct: 133 IGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRL 191

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L  
Sbjct: 192 AAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAG 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  
Sbjct: 252 CDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAM 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +       A++AL++     GR      A   G    +D  Y   P +++   +VL+ + 
Sbjct: 311 VTGVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVR 364

Query: 365 PHGEGRRIAVLG 376
           P   GR I V G
Sbjct: 365 PFTTGRVIVVFG 376


>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
 gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
          Length = 465

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 24/199 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D+V      +I V G         ++  A  L      I++TG+ GKTTT  ++   +SS
Sbjct: 99  DIVKEAKKRNIKVIG---------EIEFAYNLIPDRNYISVTGTDGKTTTVNLIYSIISS 149

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            KK    +G+  N     +       D+   + EL    L  +         HI+VI  I
Sbjct: 150 YKKA-RLLGNVGNTFSKEVESIEKDEDI---VLELSSFQLETVDNF----HSHISVILNI 201

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTI 247
           A  HL  +  IE+  +AK  I +       + LNYD+S+      EL+K K  +  + T 
Sbjct: 202 AEDHLDRYKDIEDYFNAKKNITKNQNSNDFLILNYDNSYTNSYYNELIKTKDISFNVLTF 261

Query: 248 YSFGKSKNADFQLRKWKQC 266
            +  K+K A+       +C
Sbjct: 262 ST--KNKEANLYYNSEDEC 278


>gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 454

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 139/353 (39%), Gaps = 42/353 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI GS GKTTT  M+   L          IG      G    L R       G F +  
Sbjct: 109 IAIAGSHGKTTTTSMVGTVLGKTGFDPTVVIGGKLEAYGSNAKLGR-------GEFLVAE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  FL   + P I  I  I   HL  +  +E+I +A  E    +   G +  N DD
Sbjct: 162 SDESDGSFLK--LTPTIVSINNIDLEHLGFYKDLEDIKNAFVEFANKVPFYGFVVANIDD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
              + +  +      + I  FG SK+AD +    K  + +   ++   G+    +H  + 
Sbjct: 220 ENVKSIIPRIE----RKIIKFGLSKDADIRGYDLKLVNGRYKFKINDFGE----IHLSVP 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L T+ I + L        ++L  F   +   +R+    + G   + D  Y  
Sbjct: 272 GIHNVYNALATISICNELGVPFCVIKESLENFKNAK---RRFEIKYSDGILVIDD--YAH 326

Query: 349 NPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLS 397
           +P  +KA +S          ++S   PH   R  ++  +  E      SF I D+  +  
Sbjct: 327 HPTEIKATLSAARDMYGQNRIISVFQPHRYSRVYSLFDEFVE------SFDIPDIVIITD 380

Query: 398 LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +Y+     + G     L D +  R  +V Y + ++     ++S + +GDVV+ 
Sbjct: 381 IYSAGENPIEGVSGQLLADKIRQRRNNVFYVKDVNEAESLLKSIIKNGDVVLT 433


>gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 491

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 154/400 (38%), Gaps = 50/400 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL+     H++   P       G++ID+  + P   F A+ G    G   +  AV +G
Sbjct: 3   LSDLIAGQDHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARG 62

Query: 65  AGLVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117
           A  V+V+     + A++G +   V  V DV  A     VA+R   +      +IAITG+ 
Sbjct: 63  AVAVLVDEQAPTLPAAMGDVC--VLRVPDVRKA--AAVVASRYFGEPGRAMDLIAITGTN 118

Query: 118 GKTTTKEMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF--------- 162
           GKT+   M    L   ++     IG+  + IG     +P ++   P   D          
Sbjct: 119 GKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRD 178

Query: 163 ---GIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              G   L  + +G    LTH +      + V T +   HL +   +E    AK  +F+G
Sbjct: 179 RACGSVVLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG 235

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L +   +  N DD     + A    L    + ++    +AD++       +  S   +  
Sbjct: 236 LCRRAVV--NADDP----VGAGIRKLMPGAVTTYALDGDADYRASDLAVDASGSRFTLHH 289

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+         G     N L T+    +L   +   + AL       GR +R +  +  
Sbjct: 290 DGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQ--IPG 347

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           G   ++D  Y  +P S+     VL+ I     GR I V G
Sbjct: 348 GTSVIVD--YAHSPDSLN---KVLTTIRGFARGRVITVFG 382


>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
          Length = 457

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 126/300 (42%), Gaps = 44/300 (14%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV G  D         VA  ++ K  +I +TGS GK+TT    T+ +  + K Y    +
Sbjct: 96  IPVIGEIDF--------VAPHIKGK--VIGVTGSNGKSTT----TMLIGHLLKKYGYKTA 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +IG PL+L     ++DF + EL    L    +  HL++ H+A++T +AP H+     
Sbjct: 142 VAGNIGNPLSL-HASQNLDFIVIELSSFQL----YWAHLLKSHVAIVTNLAPDHIDWHGS 196

Query: 203 IEEIASAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADF 258
                 AKA +   L++ G   +  N D    +L    S    + ++Y  G+      D 
Sbjct: 197 FTNYLKAKARLVR-LQEPGHWAVVQNRDVDALQL----SGKSAVASLYWEGQEPVHKTDA 251

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   +Q +  S+ + +L     +V    IG H  +N+ MT   + +         K LS
Sbjct: 252 YICMGEQEAWLSYNKKELLFDYRDV--DLIGRHNLENLAMTASALILGGVPCSNLTKQLS 309

Query: 319 VFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            F P       +RC           ID+S   N A+   A++ +        G ++ +LG
Sbjct: 310 DFIPLP-----HRCTFVAEINGVRYIDDSKGTNVAASATALTSI-------HGPKVVILG 357


>gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 498

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 20/232 (8%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I  +P+  +N + +DSR + P++ F A+KG   DGH+FI  A+ K    V+         
Sbjct: 14  IKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAVLSEVSERKQH 73

Query: 79  GSLSIPVFGVDDVLGALNK--LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSS 132
           G ++            L+K    ++ R      S+  +I ITG+ GKTT  +++      
Sbjct: 74  GKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTVTQLINQWSEL 133

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------- 185
           +    A +G+  N     L            I     S L +++ +T  V  H       
Sbjct: 134 LGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSVTIEVSSHGLVQNRV 193

Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                  A+ T +   HL     +++   AK  +F        I LN +D +
Sbjct: 194 KNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTD-HTVNKIILNANDKY 244


>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
 gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
          Length = 490

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 39/372 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD    L   A     +    ++A+TG+ GKT+         S  ++ +A  G    +
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVA-------SFTRQIWAYAGFPAAN 134

Query: 147 IGVPLTLARM-----------PVDVDFGIFEL---GMSHLG--------EIRFLTHLVRP 184
           IG     + M           PV++   + EL   G++H          + R L   VR 
Sbjct: 135 IGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRL 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L  
Sbjct: 194 AAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAG 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  
Sbjct: 254 CDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAM 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +       A++AL++     GR      A   G    +D  Y   P +++   +VL+ + 
Sbjct: 313 VTGVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVR 366

Query: 365 PHGEGRRIAVLG 376
           P   GR I V G
Sbjct: 367 PFTTGRVIVVFG 378


>gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
 gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
          Length = 458

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 43/326 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + + +A+  + +IPV    ++LG +        + +  T + ++G+ GKTTT  MLT  L
Sbjct: 82  DNEELAAARAKNIPVITRAELLGEI--------MTNYKTAVGVSGTHGKTTTTSMLTEIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAV 188
            +        GS +  + V   L  +  ++  G  +  ++   E    FL+    P I +
Sbjct: 134 VN--------GSLDPTVSVGGILPSIHGNLRIGHSDNFVTEACEYTNSFLSFF--PTIEI 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
           I  I   HL  F  I +I ++       L + G + +N D D+  E+ K  +       +
Sbjct: 184 ILNIEEDHLDFFKDINDIRNSFGRYVRLLPENGLLVINNDIDNVEEIYKNAACP-----V 238

Query: 248 YSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
            + GK+ +AD+      + +    S+  ++ QG ++  +   + G H   N L  + +  
Sbjct: 239 ITVGKTPDADYTADNISFDEFGCPSYDLIR-QGNTIGRIALSVPGIHNVYNSLAAIAVAI 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------ 358
            L  D+ T I +L  FH   G  +R++       FT+ID+ Y  +PA + A I+      
Sbjct: 298 HLGIDISTIIDSLKGFH---GTDRRFQKKGTVNGFTIIDD-YAHHPAEINATINSAMNYP 353

Query: 359 ---VLSQISPHGEGRRIAVLGDMCEM 381
              ++    PH   R  A L D  ++
Sbjct: 354 HKKLVIIFQPHTYTRTKAFLKDFADV 379


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 159/408 (38%), Gaps = 70/408 (17%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + L+ ++ H+    PQG    +  DSR + P + F A  G   DG   +  A+ +GA   
Sbjct: 21  EALEWLRAHA----PQG---ALRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAAC 73

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RSKATIIAITGSVGK 119
           +V  + V +        FG + V  AL  L  A  L           +  ++A+TG+ GK
Sbjct: 74  LVEREGVEAF------RFGAEGV-AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGK 126

Query: 120 TTTKEMLTIAL-----SSIKKTYAC--IGSYNNHIGVPLTLARM------PVDVD----- 161
           T+T   +  AL     S +     C  IG+    +GVP +L         PV +      
Sbjct: 127 TSTTWWIADALNLLAGSGLATHGGCGLIGTLG--VGVPPSLQGTGLTTPDPVRLQQAFAG 184

Query: 162 -----FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE- 215
                 G   +  S +G        +R  +AV T     HL   +G+     AK+ +F+ 
Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDW 244

Query: 216 -GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            GL+      +N DD     L   S  L  + I  +  S     +L    Q  + +W E 
Sbjct: 245 PGLQAA---VVNIDDPRGGEL---SDTLAQRPIDLWTTSITGPARL----QARDVTWGEG 294

Query: 275 QLQGKSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            L+    E V         IG++   N+L  +  +  L   ++ A+ A +   P  GR +
Sbjct: 295 GLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRME 354

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                +++    L+   Y   P +++ A+  L  ++    GR   V G
Sbjct: 355 ----LIHEPGQPLVAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFG 398


>gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 517

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 145/370 (39%), Gaps = 37/370 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR IAP + F A  G   DG   +  A+ +GA   +V    VA+    + P   +  + 
Sbjct: 39  DSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAFAFPAAPGASLASLP 98

Query: 93  GALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G L   A  +AA+   + +    ++A+TG+ GKT+T   L  AL+   K+  C  +    
Sbjct: 99  G-LKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNGRAKSPVCALAGTLG 157

Query: 147 IGVPLTLA----------------RMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAV 188
           +GVP  L                 R  VD       +  S +G  + R     +R   A+
Sbjct: 158 LGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEASSIGLEQGRLAGTQIR--AAI 215

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T     HL     +     AK  +F+  GL+      +N DD     L A+  A  +  
Sbjct: 216 FTNCTQDHLDYHGSMAAYWRAKRALFDWPGLQAA---VINIDDPAGAQLHAE-LAGRVPD 271

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++S      A    R     ++     V+       +    IG++  QN+L  L  +  L
Sbjct: 272 LWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGHYNLQNLLAVLATLRSL 331

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A++A +   P  GR ++   AL      ++D  Y   P ++  A+  L  ++  
Sbjct: 332 GWPLAEALQAGAGLQPVPGRMQQL--ALAGQPLVVVD--YAHTPDALAKALQALRPLAAR 387

Query: 367 GEGRRIAVLG 376
             GR   V G
Sbjct: 388 RAGRLWCVFG 397


>gi|325144962|gb|EGC67245.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240013]
          Length = 506

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 147/367 (40%), Gaps = 44/367 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S       + E R   VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLSAAR--GAYLEKR--LVLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484

Query: 448 VVKSSNS 454
           +   + S
Sbjct: 485 LNMGAGS 491


>gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 515

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 6/123 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V  + +DSR +A   AF A+KG   DG DFI  AV  GA +++   D     G  S+  
Sbjct: 30  MVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAVSLGAKVIIAECDTQQEHGQTSMRE 89

Query: 85  ---VFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +    D+   L+ LA        S+  II +TG+ GKT+T ++ +   + + K  A 
Sbjct: 90  QSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTGTNGKTSTVQLTSQLAALLNKRAAS 149

Query: 140 IGS 142
           IG+
Sbjct: 150 IGT 152


>gi|304386680|ref|ZP_07368961.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
 gi|304339233|gb|EFM05312.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
          Length = 469

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            ++   + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDVLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 448 LNMGAGSIN--RVPAALLE 464


>gi|306832975|ref|ZP_07466107.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
 gi|304424874|gb|EFM28008.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
          Length = 452

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A + S A II ITGS GKTTT  M+   L++  K+    G  + +IG P + +A+   D 
Sbjct: 107 AYMISAAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 162

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIA+IT + P H+      EE  +AK  I + +   
Sbjct: 163 DILVMELSSFQL----MGTDTFHPHIAIITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             + LN++    + L  K+ A     +  F  +K  D
Sbjct: 219 DFVVLNFNQDLAKELAQKTAA----QVVPFSTTKKVD 251


>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus YJ016]
 gi|60390522|sp|Q7MNV3|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           YJ016]
          Length = 442

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 31/300 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LVV N  +  +   +   +     V+G +   A AA       +IAITGS GK+T  +
Sbjct: 69  ADLVVTNPGIALATPQIQTVLARGVAVVGDIELFAWAA----DKPVIAITGSNGKSTVTD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            LT  +++       IG    +IGVP  L  +  +V+  + EL    L E     HLV  
Sbjct: 125 -LTGVMANACGVKCAIGG---NIGVP-ALDLLEQEVELYVLELSSFQL-ETTTSLHLV-- 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A    ++  H+  + G+++   AK  IF+   K G +  N DD   +     SH    
Sbjct: 177 -AAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH-AKHGVV--NRDDR--QTYPETSHGQQS 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG S + +F +   +    +SW+    Q          +G H   N+L+ L +++
Sbjct: 231 LALVTFG-SDDKEFGVMSHQ---GESWLSYNQQPILASRELKLVGQHNVANVLVVLALLT 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLS 361
               D    + AL  +      G  +RC   A N+G    +++S   N AS +AA+S L+
Sbjct: 287 CAGIDYRKGLSALKSY-----TGLTHRCQVVADNRG-IKWVNDSKATNLASTQAALSGLN 340


>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium johnsoniae UW101]
 gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
           johnsoniae UW101]
          Length = 487

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 143/383 (37%), Gaps = 65/383 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +   + F AI+G   DGHD+I  A+Q GA  ++   D +       +   
Sbjct: 24  IQKIEFDSRKVESNDVFVAIRGSLSDGHDYIEKAIQLGAKAIIC--DKLPENIQKDVTYI 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML---------------TIA 129
            V D   AL  +A        +K  ++ +TG+ GKTT   +L               T+ 
Sbjct: 82  QVKDTNTALAFMAANYFGDPSAKLKLVGVTGTNGKTTIASLLFQLFEKAGFKVGLLSTVK 141

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT------HLVR 183
           +   K  Y    +  + + +   L  M         E G++H     F+       H  R
Sbjct: 142 IVVDKTEYPATHTTPDSLTINHYLNEMA--------EAGVTHC----FMEVSSHGIHQKR 189

Query: 184 PHI-----AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                    + T ++  HL       E    K   F+ L KT  +  N DD    ++   
Sbjct: 190 TEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDSLPKTAFVLSNIDDKNGSVMLQN 249

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMA 293
           + A            K   + L+ +     Q  +E QL G  ++V  +      IG   A
Sbjct: 250 TAA------------KKLTYALKSYADYRAQ-ILESQLSGLLLKVNDNEVWVKLIGTFNA 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L   G    L  D   A++ LS      GR  +Y  + N G   ++D  Y   P ++
Sbjct: 297 YNVLAIYGTAVELGIDSLEALRLLSDLESVSGRF-QYIVSDN-GITAVVD--YAHTPDAL 352

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           +  +  ++ I    E + I V+G
Sbjct: 353 ENVLKTINDIRTKNE-QLITVVG 374


>gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM
           17629]
          Length = 459

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 39/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  L + +         +  I V   L+ +  ++  G  E  +S
Sbjct: 114 IAVAGTHGKTTTTSMISEILLAAQT--------DPTISVGGILSSIHGNLRVGDSEYFIS 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-D 229
              E        RP  ++I  I   HL  F  I +I  +  E        G   +N + D
Sbjct: 166 EACEYTNSFLNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVH 285
           S+ E++         + I ++G     DF         K C+  + M    QG  +  V 
Sbjct: 226 SYEEIVAGLP-----QKIITYGFDSKYDFYPENITYDDKACASFTAMR---QGSPLFDVK 277

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             + G H   N L  + + + L  D ++ +  L  F    G  +R++        T+ID+
Sbjct: 278 LSVPGAHNVSNALAAIALSTTLGLDEESILTGLDKFG---GADRRFQYKGKVNGVTIIDD 334

Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  ++A ++   +           PH   R  A L D  ++  LS +  + LA++
Sbjct: 335 -YAHHPTEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADV--LSMADVVVLADI 391

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    +   +S   +L L   L + ++ HY  + + +  F+  + V+GD+++ 
Sbjct: 392 YAAREQNTYGISSKDILDL--LLEKGVNAHYFPSFEEIEKFLSENCVNGDLLIT 443


>gi|309379069|emb|CBX22371.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 480

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 120 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 171

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 172 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 229

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 230 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFE 285

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 286 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 343 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 398

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 399 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 458

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 459 LNMGAGSIN--RVPAALLE 475


>gi|229163681|ref|ZP_04291629.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
 gi|228619818|gb|EEK76696.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
          Length = 436

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   FS I ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFSDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
 gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
          Length = 450

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L+   K+    G  + +IG P + +A+     
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTAQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        PHIAVIT + P H+      E   +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIDSF----HPHIAVITNLMPTHIDYHGSFEAYVAAKWNIQNRMTSD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             I LN++    + L  K+ A
Sbjct: 218 DFIILNFNQDLAKELATKTKA 238


>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
 gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
          Length = 495

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 47/271 (17%)

Query: 21  IVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +V  G V+  GI  DSR +   + F  + G   DGHD+   A+  GA  +VV  ++    
Sbjct: 15  VVGDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASGAAALVVEREL---- 70

Query: 79  GSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +P   V D   A+  LA       + R+R    +I ITG+ GKTT   ++   +  
Sbjct: 71  -DVPVPQLVVKDARHAMAVLADYMFDSPSRRMR----MIGITGTNGKTTITYLIEKIMKD 125

Query: 133 IKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH---- 185
                  IG+     G    P++    P  V+   +   M+  G ++     V  H    
Sbjct: 126 AGVNTGLIGTIQMRYGGQSYPMS-GTTPEAVELQRYLGNMAEQG-VQCCVMEVSSHALEQ 183

Query: 186 ---------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYD 228
                     A+ T +   HL   + +EE  +AK  +F  L          +    LN D
Sbjct: 184 GRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDSKYAVLNAD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           D     L+A++ A     + ++G  K +D Q
Sbjct: 244 DPASSYLQAQTAA----QVITYGVEKESDVQ 270


>gi|284799407|ref|ZP_06390126.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
 gi|284797770|gb|EFC53117.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
          Length = 469

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 152/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P ++V+T I   H+  +   ++++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVDKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKIS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A +S      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I +       Y E +  L   + + L DGDVV
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRILGKLEPIYCENVADLPQMLLNVLQDGDVV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + L+E
Sbjct: 448 LNMGAGSIN--RVPSALVE 464


>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 445

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F   + ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEQEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
 gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
          Length = 440

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP +L  +  DV+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-SLDLISPDVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG  + A F L     R++    +++ M   E+ L     
Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419


>gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
          Length = 464

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 41/333 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD 159
           A L      +A  G+ GKTTT  ML  A+ ++    T+   G  + +        +    
Sbjct: 100 AELGRGLKTLAAAGTHGKTTTSSMLATAIDALGLDPTFVVGGMVDAY--------KTNAK 151

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
              G + +  +   +  FL   + P++A++T + P HL +++ GI+EI    A+    + 
Sbjct: 152 SGTGEYYVVEADESDGSFLN--LSPYVALVTNVEPDHLDHYTGGIDEIRDTFAKFMSSVP 209

Query: 219 KTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
             G   +  DD   EL++ A++ A   K +Y++G  +  D  +  +      S  ++ + 
Sbjct: 210 DEGACVVFGDDP--ELVRIARASA---KRVYTYGLGEGNDIVVSGYSTKGISSTFDLSMP 264

Query: 278 GKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             S     +    G H A N    LG+V  L  DV  A + ++ +    G  +R+     
Sbjct: 265 DGSNVTCTLKKNPGLHNALNAAGILGVVFALGLDVAAAAEGIADY---TGVRRRFDLVGE 321

Query: 336 QGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               T++D+ Y  +P  +KA +S         V +   PH    R A L D     E  +
Sbjct: 322 AAGVTVVDD-YAHHPTEIKATLSAAAGLDFKRVFALFQPH-RYSRTASLTD-----EFGK 374

Query: 387 SF-HIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +F   D+  ++ +Y      + G     + DA+
Sbjct: 375 AFADADVLRIMDVYPAGEAPIEGVSGKLIADAV 407


>gi|325132969|gb|EGC55646.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M6190]
 gi|325136990|gb|EGC59587.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M0579]
          Length = 506

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 485 LNMGAGSIN--RVPAALLE 501


>gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
          Length = 477

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 175/410 (42%), Gaps = 60/410 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128
           N ++ A+ G L IPV    ++L  L +             IA+ G+ GKTTT  ++   +
Sbjct: 90  NPEVRAARGRL-IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGIL 139

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +++  T+  IG   N IG    L +       G + +  +   +  FL  L++P +AV
Sbjct: 140 GEANLDPTF-VIGGQVNSIGANSRLGK-------GEYLVAEADESDASFL--LLQPLLAV 189

Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
           IT +   H+  + G    + +A  E    L   G   +  DD    ELL         + 
Sbjct: 190 ITNVDADHMDAYGGDFIALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPDIG-----RP 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVS 304
           + ++G  K AD+QL+  KQ   ++  +V   GK   + VV +  G H A N L  + +  
Sbjct: 245 VLTYGTCKEADYQLQALKQIRARTQFQVARPGKDNWLTVVLNLPGAHNALNALAAIAVAH 304

Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359
            L    D+AI+  L  F    G G+R++C    A   G   L+D+ Y  +P  + A +  
Sbjct: 305 ELGV-ADSAIQRFLKGF---SGIGRRFQCYGEIATPAGKVLLVDD-YGHHPRELAATLEA 359

Query: 360 LSQISPHGEGRRIAVLGD---MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHV 411
           +    P    RR+ V+          +L ++F      +D+  +L +Y    V + G   
Sbjct: 360 IRVGWPE---RRLVVIFQPHRYTRTRDLFEAFIQVLSQVDVLFLLEVYPAGEVPIGGADS 416

Query: 412 LALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            AL  A+      R I V   E ++ + L +   L +GD+++   +   G
Sbjct: 417 RALWQAIQARGQVRPILVEDKEIIEEMLLDL---LREGDLLLTVGAGDIG 463


>gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
 gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
          Length = 485

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 153/398 (38%), Gaps = 51/398 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIG 79
           P   V+GI +DSR +A  + F A+ G   DG D+I  A+  GA  ++     +    + G
Sbjct: 15  PNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAILAEGSSLRYEENGG 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           ++ + + GV + L       +A R        AT+I +TG+ GKT+   +       +  
Sbjct: 75  AVCVFMPGVKEQLS-----EIAGRFFNHPSRHATLIGVTGTNGKTSVTHLAAQLAEKLGY 129

Query: 136 TYACIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLT 179
           T A IG+                 + + V   L+ +  +  DF   E+    L + R   
Sbjct: 130 TAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAMEVSSHALVQRR--V 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAK 238
             +R   AV T I+  HL     +     AK  +FE  E    + +N DD +  + L+  
Sbjct: 188 EALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDFELNHRV-INLDDRYLRDWLEGA 246

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S+ L I    S      A+ Q+         +   +  +G+  +     +G     N++ 
Sbjct: 247 SNGLSI----SLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFSTPLLGRFNVYNVVS 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + I+      +    +      P  GR +    A   G   L+   Y   P +++    
Sbjct: 303 AVAIMLAQKQSLTAIAQHCRHLSPVPGRME----AFQAGSSALVVVDYAHTPDALQ---Q 355

Query: 359 VLSQISPHGEGRRIAVL--------GDMCEMGELSQSF 388
           VL  +  H +G+   V         G   +MG+++  F
Sbjct: 356 VLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEF 393


>gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
 gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
          Length = 465

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 33/300 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HIGVPLTLARMPVDVDF 162
           +  I G+ GKT+T  MLT+AL    +  ++A  G  N      H G            + 
Sbjct: 114 VACIAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGANAHHG------------EG 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G+F +  +   +  FLT+   P +AV+T + P HL +    E       E    +   G 
Sbjct: 162 GVF-VAEADESDGSFLTY--SPSVAVVTNVEPDHLDHHGTAEAYTKVFTEFVSRIVPGGL 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKS 280
           + +  DD   + L  ++  LG++ +  +G++     D ++ ++    +   + + L G+ 
Sbjct: 219 LIVCGDDPAADDLGRQAEDLGVR-VRRYGRTATGPGDARILEYVPAPDGGVVRLVLDGEE 277

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V     G HMA N +  L     L A V   +  L+ F    G  +R+      G   
Sbjct: 278 VSVRVAVPGEHMALNAIAALLAGIELGAPVPGLVDGLAAFG---GVRRRFEFKGRAGDVR 334

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           + D+ Y  +P  + A +  +   +  G GR I V      +   +++F ++ AE LSL +
Sbjct: 335 VYDD-YAHHPTEVAAQLRAVRTAA--GSGRVIVVF--QPHLYSRTKTFSVEFAEALSLAD 389


>gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
 gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
          Length = 492

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 26/252 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN + +DSR + P + F AIKG   DG  FI  A++ GA  ++   D +    S   P++
Sbjct: 20  VNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASAIIA--DRLCEFESDFEPLY 77

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V ++   L  LA     +      ++ +TG+ GK+TT  M+           A IG+  
Sbjct: 78  LVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKSTTTAMIAHLAQFCHTQAAIIGTLG 137

Query: 143 ---------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP---HIAVIT 190
                      N     + L R+  D+     +L    +     + H V       AV T
Sbjct: 138 YGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAMEVSSHGLVQHRVDQCYFKAAVFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     ++    AK  +F   +    I LN DD   E    K       ++  +
Sbjct: 198 NLSRDHLDYHGDMQSYGDAKLMLFRDFDADHVI-LNQDDGQAEQWIEK---YSFNSLICY 253

Query: 251 GKS----KNADF 258
           G+     KNA F
Sbjct: 254 GRKNLAPKNAQF 265


>gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 461

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 32/178 (17%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           +D  DF        A LVVV+  +  ++  +       +PV+G         ++ +AAR 
Sbjct: 63  HDAEDFTR------ADLVVVSPGVPMALAEVVRARAAGVPVWG---------EVELAARF 107

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   I+AITG+ GK+TT  +     +  ++T+        ++G PL    +    D G 
Sbjct: 108 LAGVPIVAITGTNGKSTTTALAGALFARHRRTF-----TGGNLGTPLCQHVL----DGGG 158

Query: 165 FELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            E+ ++ L   +    L +RP +A I  + P HL  +  +++ A+AKA +F GL++ G
Sbjct: 159 AEVVVAELSSFQMEGLLSLRPRVAAILNVTPDHLDRYRDVDDYAAAKARLF-GLQQPG 215


>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
           ATCC 19707]
 gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
          Length = 519

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 27/236 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VN 71
           SIG V +  ++ +S+DSR +AP   FFA +G    GH  I  AV +GA  +V      V+
Sbjct: 31  SIGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIVYDPVIPVS 90

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIA 129
             +   +   +IP+  + D+   +  +A    LR   +  ++ +TG+ GKT+    L  A
Sbjct: 91  PAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTSVSHFLAQA 150

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---ELGMSHLGEIRFLTHLVRPH- 185
           L         +G+     G+  TL   P+     +    +L       IR+    V  H 
Sbjct: 151 LHRQGIPCGLVGTLGK--GLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVLEVSSHA 208

Query: 186 ------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                        A+ T ++  HL     +    +AK  +F   E    + +N DD
Sbjct: 209 LEQGRVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQPELRHAV-INIDD 263


>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
 gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
          Length = 467

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 137 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 191

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 192 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +         HA  ++ + +FG  + A F L +  Q  E  +   +      E+    +G
Sbjct: 245 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGREYLFARDEAVMACAELSL--VG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +   A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 297 RHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +    L
Sbjct: 351 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLATLPVQ---L 397

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V      +P      + ++M+ +   I++ L  GD+V++  S +C  +
Sbjct: 398 CCFGVDG-HQFMPLHPSARFYDSMESIIRSIRTQLKSGDMVLL--SPACASF 446


>gi|312866147|ref|ZP_07726368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
 gi|311098551|gb|EFQ56774.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
          Length = 451

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S++ II ITGS GKTTT  M+   L++  ++    G    +IG P + +A    D D  +
Sbjct: 110 SESPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGFPASEVAMTATDQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +        PH+AVIT + P H+      EE  +AK  + + +     + 
Sbjct: 166 MELSSFQLMGVETF----HPHMAVITNLMPTHIDYHGTFEEYVAAKWHLQDQMTAGDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN++    + L  K+ A    T+  F   +  D
Sbjct: 222 LNFNQDLAKDLATKTQA----TVVPFSTQEEVD 250


>gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL001PA1]
 gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA2]
 gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA3]
 gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA4]
 gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL060PA1]
 gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA2]
 gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 499

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 23/257 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEAGVPII 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    V        T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV----------- 188
             + G  L  AR     P   D       M+  G    +  +    +A+           
Sbjct: 136 FRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTCFDVV 195

Query: 189 -ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   HL   + ++   +AKA +F   L + G I  N DD     L  +  A G+K 
Sbjct: 196 AFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVKA 253

Query: 247 IYSFGKSKNADFQLRKW 263
           + +    + +D+Q+  W
Sbjct: 254 VTT-SIHQPSDYQVTSW 269


>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 487

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 150/391 (38%), Gaps = 41/391 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+   P   VN I  DSR +   + F AI G   DGHDFI  A ++GA 
Sbjct: 4   LKDILYKVTLESVTGNPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKKAEEQGAI 63

Query: 67  LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
            ++      D V  I  +        D   AL  +A            ++ ITG+ GKTT
Sbjct: 64  AIICEQMPEDFVNGITYVQ-----TSDTAQALAVMASNYYENPSENLKLVGITGTNGKTT 118

Query: 122 TKEML----TIA------LSSIK-----KTYACIGSYNNHIGVPLTLARM-PVDVDFGIF 165
              +L    T A      LS++K     + +    +  + + +   LA M    V++   
Sbjct: 119 IATLLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNEAGVEYCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +     + T ++  HL       E    K   F+ L KT     
Sbjct: 179 EVSSHGIHQKR--TEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDNLPKTAFALS 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   +++   + A  +    ++     AD++     Q  E  +  + L+    EV  
Sbjct: 237 NIDDKNGQVMLQNTRAKKV----TYALKSFADYR----AQILENQFTGLLLKVNDQEVWV 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L       +L      A++ LS      GR +    A  +    ++D  
Sbjct: 289 KLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYMISA--KKITAIVD-- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P ++K  +  ++ I    E   I V+G
Sbjct: 345 YAHTPDALKNVLETINDIRTKNE-ELITVVG 374


>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
 gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
          Length = 443

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 41/246 (16%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEM---------LTIALS-SIKKTYACIGSYN 144
           ++++  A+R  +++ IIAITGS GKTTT  +         L + L  +I K++A + + +
Sbjct: 90  ISEIEFASRF-TESKIIAITGSNGKTTTTSLMYHIMKEAGLDVGLCGNIGKSFAQLVAED 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGI 203
            H              ++ + E+    L +IRF     +P+IA+I  I P HL  + +  
Sbjct: 149 PH--------------EYYVIEISSFQLDDIRFF----KPYIAIILNITPDHLDRYENNF 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           ++ A +K  I E          N DD     L  +      KT +S         + +K 
Sbjct: 191 DKYAHSKFRITENQTDKEYFVYNVDDEKINELIKELKIKANKTSFS--------MKDKKQ 242

Query: 264 KQCSEQSWMEVQLQGKS--MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           K  + +   E++    S  M +   G IG H   N L      +IL    D   ++LS F
Sbjct: 243 KAYANEKIFEIKDNDNSFLMPIADLGLIGKHNVSNSLAAATAANILKIRKDVIKRSLSDF 302

Query: 321 HPKEGR 326
              E R
Sbjct: 303 KSVEHR 308


>gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
 gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
          Length = 493

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 153/380 (40%), Gaps = 49/380 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83
            V+ + +DSR + P   F A+ G   DG  FI  A+++GA   +     V + G++ I  
Sbjct: 24  LVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIID 83

Query: 84  --PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 84  DVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAVMG 143

Query: 142 SYNN---------------HIGVPLTLARMP-VDVDFGIFELGMSHL--GEIRFLTHLVR 183
           +  N                + +  TL+ +      +   E+    L  G ++ L+    
Sbjct: 144 TTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAA- 202

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHAL 242
               V T ++  HL     +EE A+AK  +F   +    I +N DD       ++ S+A+
Sbjct: 203 ---GVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCERAI-INVDDEVGHQWASQLSNAI 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGKSMEVVHHG--IGYHMAQNM 296
            +          N +F+   W   +E S+ E    ++  GK      H   IG   A N+
Sbjct: 259 AVSL------KANTEFESAIW--ATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNL 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++    +  L  +    ++      P  GR + ++         ++D  Y   P +++ A
Sbjct: 311 MLAFATLLSLGKEKQALLETAGQLQPVLGRMELFQT--EDRAKVVVD--YAHTPDALEKA 366

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L     H EG+  A+ G
Sbjct: 367 LQAL---RVHCEGQLWAIFG 383


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G++P   +  I   S  + P   F AI+G   DGHDFI  A+ +GA + VV    V +  
Sbjct: 23  GVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFIDQALARGA-VAVVAEKEVDARD 81

Query: 80  SLSIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           ++++ V    + L  L+ +   A +ARL     ++ +TG+ GKTTT  ++   L    K 
Sbjct: 82  AVTVRVADARNALALLSAVFYGAPSARL----VLVGVTGTNGKTTTAALVEHILVKAGKQ 137

Query: 137 YACIGSYN-NHIGV----PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP------- 184
              IG+ N  ++G     PLT    P   D       M+  G    +TH+V         
Sbjct: 138 VGVIGTGNFRYVGRRFKNPLT---TPESADLQHILRDMATAG----VTHVVMEVSSHALA 190

Query: 185 ---------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                     +A+ T +   HL     +E     K  +F G    G
Sbjct: 191 QQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGTRSVG 236


>gi|19704790|ref|NP_604352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19715127|gb|AAL95651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 454

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 173/424 (40%), Gaps = 56/424 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H +G +F +    K  G+     D V  +    I +  +D++ 
Sbjct: 54  DKKAMTSEEAL-----NHLEGLEFFI----KSPGIPY--NDFVKEVQKRGIKI--LDEIE 100

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   L++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 101 IAYNYM-IEKGLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKATYAGNIGRSLS 153

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P I++I  I P H+  +   +E  + K 
Sbjct: 154 EVLLKEKDLDFISLELSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNTKF 209

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +   +      N DD   E ++ ++  +  K I S  K K AD  +      +++ +
Sbjct: 210 NITKNQTEDLYFIENIDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVE-----NDKIY 260

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +        ++   GI  H  +N L  +    IL  D +   + L +  P E R + + 
Sbjct: 261 HDKDDIIDVDKLSLKGI--HNLENTLFMVATAEILKLDREKLKEFLMIATPLEHRTELF- 317

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N G    I++S   N  S K AI              I + G   +  +L+      
Sbjct: 318 --FNYGKLKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP----- 362

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           LAE++   NI  V+L G     +++ L +   V Y +      + I++SL D      K 
Sbjct: 363 LAEMIK-ENIKEVYLIGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMRKRFTKD 418

Query: 452 SNSC 455
           S+  
Sbjct: 419 SDEV 422


>gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 511

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 156/395 (39%), Gaps = 46/395 (11%)

Query: 19  IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +GI+P        +N IS +S+ +     F  + G + DG  + + A++ GA   ++ + 
Sbjct: 13  VGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAIIGSA 72

Query: 74  MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129
               IGS+    +  ++D L  +    VA    R   K  +I +TG+ GKTT   +L   
Sbjct: 73  AKEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132

Query: 130 LSSIKKTYACIGSYNNH------IGVPLT----------LARMPVDVDFGIFELGMSHLG 173
           L  + K  A  G+  N       + +  T           A +  + +F I E+    + 
Sbjct: 133 LKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDS 230
           + R          A+ T +   HL   S +E     K ++F      EK G   LN+DD 
Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGICVLNHDDH 250

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV------QLQGKSMEVV 284
           +   L   S  L  +++    K   ++F+   +   +++ + E+          + +++ 
Sbjct: 251 WISKL---SSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPREKIQLF 307

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTL 341
              +G     N +  + I+  L   +    K +  F    GR ++ +   N   +   T+
Sbjct: 308 VPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSRSLPTV 367

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           I + Y   P  +K    VL  I    EG+ I V G
Sbjct: 368 IVD-YAHTPDGLK---KVLQSIKKLCEGKLITVFG 398


>gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 488

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG]
 gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF]
 gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
 gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
          Length = 470

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 21/220 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140
           IPV    D L AL          +    +AI G+ GKTTT  ML ++L+++    +YA  
Sbjct: 94  IPVVHRSDALAAL---------MAGTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  +     P + A        G  E+ ++   E     H   P +AV+  +   H +N+
Sbjct: 145 GDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANY 194

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           + IEEI  +       +   GT+ ++ D      L  +        + ++G +++AD ++
Sbjct: 195 ASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRV 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            K       S + V L GK +       G H A N +  L
Sbjct: 255 HKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAAL 294


>gi|153207157|ref|ZP_01945936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918426|ref|ZP_02218512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212219390|ref|YP_002306177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuK_Q154]
 gi|226711903|sp|B6J5K6|MURD_COXB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120576818|gb|EAX33442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917932|gb|EDR36536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212013652|gb|ACJ21032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuK_Q154]
          Length = 442

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 54/361 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GKTT   ++ + + +  +  +  G    +IG P+ L ++  + D+ + EL  
Sbjct: 108 IIAITGSNGKTTVTTVVGLMMKAAGRNVSVCG----NIGEPV-LEQITPEPDYYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  +R   A I  I+  H++ ++ +++   AK  I             Y D
Sbjct: 163 FQLE----TTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRI-------------YTD 205

Query: 230 SFFELLKAKS-----HALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSM 281
            F  ++ A       H    K   SFG +  ADF L +  Q +    Q  + + +Q   +
Sbjct: 206 CFIPIVNADEPEIWCHLPFNKKPLSFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKL 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              HH       QN L  L + +     ++  +  L  F      G R+RC   + +  +
Sbjct: 266 NARHH------LQNALAALALGTAAKIPIENMLHLLRDFS-----GIRHRCQWVRKYKEI 314

Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + +AAI  L Q +   +G+ I + G   +  + S      L +V+  Y
Sbjct: 315 DYYNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFS-----PLKDVVKRY 366

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +  V L G     L+  L     + ++++M+        +   GD+V++  S +C  + 
Sbjct: 367 -VKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL--SPACASFD 423

Query: 460 L 460
           +
Sbjct: 424 M 424


>gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 21/220 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140
           IPV    D L AL          +    +AI G+ GKTTT  ML ++L+++    +YA  
Sbjct: 94  IPVVHRSDALAAL---------MAGTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  +     P + A        G  E+ ++   E     H   P +AV+  +   H +N+
Sbjct: 145 GDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANY 194

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           + IEEI  +       +   GT+ ++ D      L  +        + ++G +++AD ++
Sbjct: 195 ASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRV 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            K       S + V L GK +       G H A N +  L
Sbjct: 255 HKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAAL 294


>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
 gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 58/342 (16%)

Query: 32  IDSRSIAPQEAFFAIKGP----HYDGHDFILH-AVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +D+R IAP         P     ++G  F  +  +    G+ +   D+ A+  S  + V 
Sbjct: 37  MDTRDIAPGHEELEKLAPGSLLKWNGQQFTEYDELVVSPGIAIARDDIQAAQES-GVSVI 95

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G  ++    N L V          IAITGS GK+T  +++   +++  K  A +G    +
Sbjct: 96  GDIELFAQANTLPV----------IAITGSNGKSTVTDLVGELINASGKK-ALVGG---N 141

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP  L  + ++ D+   EL    L   R L     P  A +  ++  HL  +   +E 
Sbjct: 142 IGVP-ALDLLKLEGDYVALELSSFQLESTRSL----EPVAATVLNVSEDHLDRYKNYQEY 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK  I+    K  T  +N DD    +  A+S     + I  FG S N+D         
Sbjct: 197 IDAKRSIY---AKARTCLVNADDENTWIKSAESG----QNILRFGLSNNSD--------- 240

Query: 267 SEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSILTADVDTAIK 315
            +  W    +  ++  ++H G            G H A N+ + L +V I  A+++    
Sbjct: 241 -KIDWA---VDFETCTIMHDGNEILKLDELTLQGIHNALNVAVALALVDI--AEIELTQA 294

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            L      +G   R +    +   T I++S   N  +  AAI
Sbjct: 295 VLDAAKSYQGLPHRSQLVAIKDGITFINDSKATNVGATVAAI 336


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 55/365 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IAI+G+ GKTTT  M+++ L++ KK        +  I V   L+ +  ++  G  E  
Sbjct: 110 TSIAISGTHGKTTTTSMVSLILNNAKK--------DPTILVGGNLSDINGNLKIGKSEYF 161

Query: 169 MSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           ++   E    FL   +RP + +I  I   HL  F  IE IA +     E + K G + + 
Sbjct: 162 VTEACEYMDSFLN--LRPKVELILNIDSDHLDYFDDIEHIAKSFRAFAELVPKDGLV-IG 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADF----------QLRKWKQCS-EQSWMEVQ 275
           YD + F     K+    +  + +FG S+ +D+           L  +K C+ E     V+
Sbjct: 219 YDANPF----VKAALKNVSNVVTFGFSRGSDYVAEDIEFDHQGLPSFKICNGENVVANVK 274

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CAL 334
           L+           G H  QN L        L  D       L+ F    G  +R+    +
Sbjct: 275 LKIP---------GEHNIQNALAAAACTHTLGVDGSDIENTLNEF---SGINRRFDIVGM 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELS 385
             G   L+D+ Y  +P  ++A +    ++          PH   R  A+  D      LS
Sbjct: 323 IGGSVKLVDD-YAHHPTEIEATLDAAKKMKHNRLWCLFQPHTYTRTKALFSDFAPA--LS 379

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           ++  I + E+ +   I+   LS   ++  +K   P    V++ E M+ +  F+  +L   
Sbjct: 380 KADIIVMNEIYAAREININKLSAKSIVEDIKKRFPEK-EVYFFEDMEDMAGFVYENLKIN 438

Query: 445 DVVVV 449
           D+V+ 
Sbjct: 439 DLVIT 443


>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis B2/94]
 gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
          Length = 488

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|84496501|ref|ZP_00995355.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383269|gb|EAP99150.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 972

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156
           S+  I+A+TG+ GKTTT  M+   +  + +      +    +   L           ARM
Sbjct: 497 SRVPIVAVTGTNGKTTTSRMIAHIMKGVGRKVGMTSTDGIVVDERLVFKADASGPKSARM 556

Query: 157 PVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKA 211
            +    VDF + E+     G +R      R  +AV+T +AP HL     + +E++A  KA
Sbjct: 557 VLQNPRVDFAVMEVARG--GILREGLGYDRNDVAVVTNVAPDHLGLRGINTVEQLADVKA 614

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK 238
            I E + + G   LN DD     ++ +
Sbjct: 615 VIVEAVPRNGFAVLNADDPLVRKMRKR 641


>gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
          Length = 464

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 22/234 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---LTLARMPVDVDFG 163
           KA ++ ITG+ GKTTT  ++     +  K +        + G+P   + LA  P DV   
Sbjct: 104 KARMVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFSSMVLAMQPNDV--A 161

Query: 164 IFELGMSHLGE-IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTG 221
           + EL    L   I F      P +++IT I P HL  +   ++  A AK  IF   +   
Sbjct: 162 VIELSSYQLERSISF-----HPQVSLITNITPDHLDRYGQNMQRYAEAKYRIFMNQQAGD 216

Query: 222 TIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           T   N DDS  +     S  A+  +++ +FG     + QL K +     + + V+    +
Sbjct: 217 TFIYNQDDSMLQAAFGASQIAVPCRSV-AFGLEPLTNVQLDKRRVLVNGNMVVVRQNDGA 275

Query: 281 M-------EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +       EV++    G H   N+L  + +   L    +   +AL+ F   E R
Sbjct: 276 LQPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMRQALTAFGGVEHR 329


>gi|72161512|ref|YP_289169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Thermobifida
           fusca YX]
 gi|122063271|sp|Q47QX1|MURD_THEFY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71915244|gb|AAZ55146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermobifida fusca
           YX]
          Length = 465

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%)

Query: 95  LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-- 151
           +  + +A RLR    + +A+TG+ GKTTT  ML   L +  +    +G    ++G P+  
Sbjct: 95  IGDVELAWRLRPAGQVWLAVTGTNGKTTTVRMLEAMLRADGRRALAVG----NVGTPVID 150

Query: 152 -TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             LA  P   D    EL    L      +  V+PH A I  +AP HL    G+E  A+AK
Sbjct: 151 AALADGPDRWDILAVELSSFQL----HWSATVQPHAAAIINLAPDHLDWHGGMEPYAAAK 206

Query: 211 AEIFEGLEKTGTI-FLNYDDSFFELLKAKSH 240
           A+++      GTI  +N  D     L A++H
Sbjct: 207 AKVY----GAGTIRIVNAADPALREL-AETH 232


>gi|332305226|ref|YP_004433077.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172555|gb|AEE21809.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 484

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 157/374 (41%), Gaps = 59/374 (15%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++    A + +  T+  IG   N  G   T AR+     + I E  
Sbjct: 120 IAIAGTHGKTTTTSLIATIFAQAELDPTF-VIGGLLNSAG---TNARLGSS-QYLIAEAD 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S         HL +P ++V+T I P H+  + G  +++     +    L   G   L  
Sbjct: 175 ESDAS----FVHL-QPMVSVVTNIEPDHMETYQGDFDKMQDTYIDFLHNLPFYGLAVLCI 229

Query: 228 DDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH 285
           DD     L  +     IK  Y ++G S+NAD +    K    QS +  ++     ++V  
Sbjct: 230 DDPVITELLPR-----IKRKYLTYGYSENADVRATNVKHRFNQSEFTLIRKDHDDIQVTV 284

Query: 286 HGIGYHMAQNMLMTLGIVSILTAD--VDTAIK-ALSVFHPKEGRGKRYRC----ALNQGF 338
           +  G H   N+L +L  +++ T +   D+AIK AL+ F    G G+R+      A   G 
Sbjct: 285 NAPGKH---NVLNSLAAIAVATDENIADSAIKTALANF---SGIGRRFEMLGEFATGDGD 338

Query: 339 FTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSF 388
             L+D+ Y  +P  ++A I+V               PH   R   +  D   +  LSQ  
Sbjct: 339 VLLVDD-YGHHPTEVEATIAVARNNWPDRRLVMAYQPHRYSRTRDLYEDFVRV--LSQ-- 393

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLV 442
            +D+  +L +Y+     + G    A   +L RSI         Y      L   +  +L 
Sbjct: 394 -VDVLLLLDVYSAGEEKIEG----ADSKSLCRSIRQRGQLEPIYVADKSELPKLLADNLS 448

Query: 443 DGDVVVVKSSNSCG 456
           D D+++ + + + G
Sbjct: 449 DQDILMTQGAGNIG 462


>gi|161596204|gb|ABX73864.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           053442]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 91  IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 142

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 143 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 200

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 201 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 256

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 257 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 313

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 314 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 369

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 370 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 429

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 430 LNMGAGSIN--RVPAALLE 446


>gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 155/405 (38%), Gaps = 47/405 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G + D+  + P   F A+ G    G   +  A+ +GA  V+V+ D V    +    V  V
Sbjct: 27  GTAFDADRVTPGSLFIAVPGHVEGGPGAVAPALARGAAAVMVDADCVLPAAARDACVVRV 86

Query: 89  DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSY 143
            D   A     V AR       +  ++AITG+ GKT+   M+   L   + T A  IG+ 
Sbjct: 87  ADTRTA--AALVTARYFGEPGRQMDVVAITGTNGKTSVSYMVESVLRISEGTRAGVIGTA 144

Query: 144 NNHIG-----VPLTLARMPVDVDFGIFELGMSHLG---------EIRFLTHLVRP---HI 186
            + IG     +P ++   P   D       M   G          +  LTH V      +
Sbjct: 145 GSRIGDEPIPMPPSVLTTPETPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T ++  HL +   +E    AK  +F+GL +   +  N DD     + A   A+    
Sbjct: 205 GVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCRHAVV--NVDDP----VGAGIQAMMPGA 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++     AD++       +  S   +  +G+         G     N L T+    +L
Sbjct: 259 VTTYALDAEADYRATDLVVDAAGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVL 318

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+   + AL       GR +R   A   G   ++D  Y  +P S+     VL  +   
Sbjct: 319 GHDLTGLVAALERMPQIPGRFERLTTA--AGTSVIVD--YAHSPDSLN---KVLGTVRGF 371

Query: 367 GEGRRIAVLG--------DMCEMGELSQSFHIDLAEVLSLYNISH 403
             GR + V G           EMG ++ + H DL  VL+  N  H
Sbjct: 372 ARGRVVTVFGCGGDRDTTKRAEMGTIAGT-HSDLC-VLTSDNPRH 414


>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
 gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
 gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 26/220 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           S+A  I ITGS GKTTT  ++   L   +K     G    +IGV    +A+     ++ +
Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG----NIGVAACEVAQKAEANNWLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  IR      RPHI+V+  I  AHL      E  A AKA IF+         
Sbjct: 166 TELSSFQLAGIRDF----RPHISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280
           +N DD    +++   ++   K I+S  K  ++   ++     W   +  +  ++ L GK 
Sbjct: 222 VNADDEL--VMRLAENSCAQKVIFSATKKLDSGAYIKDGWIYWNDEAVIAVSDIVLPGK- 278

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                     H  +N+L  + +  +   D     K L+ F
Sbjct: 279 ----------HNLENILAAVAVAKLTGVDNKAIAKVLTTF 308


>gi|290580950|ref|YP_003485342.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
 gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DV 160
           A L S+A II ITGS GKTTT  M+   L+   ++    G    +IG P +    PV + 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSG----NIGFPASEVAQPVTEK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PH+AVIT + P H+      E    AK  I + + + 
Sbjct: 162 DILVMELSSFQL----MGTESFHPHMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTEK 217

Query: 221 GTIFLNYDDSFFELLKAKSH 240
             + LN++    + L  ++ 
Sbjct: 218 DFLVLNFNQDLAKDLANQTQ 237


>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
 gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
          Length = 467

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 137 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 191

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 192 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +         HA  ++ + +FG  + A F L +  Q  E  +   +      E+    +G
Sbjct: 245 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGREYLFARDEAVMACAEL--SLVG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +   A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 297 RHNVANVLTVLALLDSAEVNFRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +    L
Sbjct: 351 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLATLPVQ---L 397

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 398 CCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 446


>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 499

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I    +PV 
Sbjct: 33  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 91  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 378 TTGRVIVVFG 387


>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
 gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
          Length = 487

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 155/382 (40%), Gaps = 56/382 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  AV +GA  V    +  A + + S  +
Sbjct: 17  LIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAVARGAAAVAFEAEGAAPMHAESAVL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  + G L+  A+A R   + +    +I +TG+ GKT+  ++L  AL  + +    +G
Sbjct: 77  VPVKGLAGQLS--AIAGRFYGEPSRALHLIGVTGTNGKTSVSQLLAQALDLLGERCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180
           +                 + +GV  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T ++  HL     +E   +AKA++F          +N DD+F   L  ++H
Sbjct: 192 ----DVAVFTNLSRDHLDYHGSMEAYGAAKAKLF-AWPNLRCRVINLDDAFGRELAQQAH 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI------GYHMAQ 294
                 +  +  S  + F       CSE  + +  ++ + +     G+      G     
Sbjct: 247 D---SRLIGYSLSDASAFLY-----CSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLS 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  +G +  +   +D  +K L       GR +R    L  G   L+   Y   P +++
Sbjct: 299 NLLAVVGALLGMDYGLDEILKVLPQLQGPAGRMQR----LGGGDKPLVVVDYAHTPDALE 354

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
               VL  + PH +GR + + G
Sbjct: 355 ---KVLEAMRPHVQGRLVCLFG 373


>gi|228923443|ref|ZP_04086729.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836228|gb|EEM81583.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 67/371 (18%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGA 65
           HD+   +QG       + F    +++ RSI+  P                F  + V++G 
Sbjct: 22  HDMKHTVQGSD---YEKRFFTQTALEKRSISILP----------------FDKNNVEEGQ 62

Query: 66  GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++  N      + + +   L+IPV      LG          L ++ T +A+TG+ GKT
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178
           +T  +L   +     T   IG    H GV         +  + +FE       E R  FL
Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           ++   P  A++T I   H   F+ I ++ SA  E+   L+    I    DD   + ++AK
Sbjct: 160 SY--NPDYAIMTNIDFDHPDYFADINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297
              +     Y FG  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   EG  +R+      G   +ID+ Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATI 324

Query: 358 SVLSQISPHGE 368
               Q  P  E
Sbjct: 325 EAARQKHPERE 335


>gi|149193790|ref|ZP_01870888.1| UDP-N-acetylmuramate--L-alanine ligase [Caminibacter mediatlanticus
           TB-2]
 gi|149135743|gb|EDM24221.1| UDP-N-acetylmuramate--L-alanine ligase [Caminibacter mediatlanticus
           TB-2]
          Length = 436

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 34/249 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +I++ G+ GK+TT    T  LSSI +  +C IG+ +       + AR  VD D  +FE  
Sbjct: 104 VISVCGAHGKSTT----TAILSSILQNASCLIGAESKEFK---SNARY-VDSDLMVFEAD 155

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  F+     P+IAV+T   P H+  ++   ++  +  E F  L+K     +N D
Sbjct: 156 ES---DGSFVDS--NPYIAVVTNTEPEHMEFYNHDLDLFYSHYEEF--LKKAKIRVVNGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D F + L      + +K +Y    +KN  F++R             + +G   EV  +G 
Sbjct: 209 DEFIKKLN-----IPMKKVY-LKDAKNIRFEIR-----DNNPKTIFEYKGYEFEV--YGF 255

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H+A + L+ +        D +   K +  +   +G  KR+    N+  F LID+ Y  
Sbjct: 256 GEHLALDALLAIEAAKEFL-DYNEISKNIKNY---KGIKKRFDILQNESSFVLIDD-YGH 310

Query: 349 NPASMKAAI 357
           +P  +KA +
Sbjct: 311 HPTEIKATL 319


>gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 49/95 (51%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S DSR I P + F AI G H DG  FI  AV +GA  V++       +    + + 
Sbjct: 33  VFGLSADSRRINPGDLFVAIPGTHADGSRFIADAVARGASAVLMEPAAPRPVLPPHVALA 92

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              DV  +L+  A     R  ATI A+TG+ GKT+
Sbjct: 93  FSLDVRHSLSLAAARFYPRQPATIAAVTGTAGKTS 127


>gi|306830842|ref|ZP_07464004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426865|gb|EFM29975.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 452

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A + S A II ITGS GKTTT  M+   L++  K+    G  + +IG P + +A+   D 
Sbjct: 107 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 162

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIAVIT + P H+      EE  +AK  I + +   
Sbjct: 163 DILVMELSSFQL----MGTDTFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 218

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN++    + L  K+ A
Sbjct: 219 DFVVLNFNQDLAKELAQKTVA 239


>gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
 gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
          Length = 491

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 145/367 (39%), Gaps = 27/367 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR I P   F A+ G  +DG DFI  AV  GA  V+     V   G   + + 
Sbjct: 27  ITALTADSRKIVPGTLFAALPGTRHDGRDFIAQAVAAGASAVLAPKGTVLPPGCEHVAL- 85

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            ++D+        +AA         I A+TG+ GKT+T +      S +      +G+  
Sbjct: 86  -IEDLNPRRRLALLAAAFYGAQPQRIAAVTGTNGKTSTAQFTRQIWSGLGHRSGAMGTLG 144

Query: 144 ---NNHIGVPLTLARMPVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIAVIT 190
              +    +       PV++   + EL   G++HL       G  +F    V    A  T
Sbjct: 145 LVADGFPNIETLTTPDPVELHRLLAELARGGVTHLAMEASSHGLDQFRLDGVLVTCAGFT 204

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYS 249
            +   HL     +E    AKA +FE +   G +  LN D   FE L A   +   +T+  
Sbjct: 205 NLTRDHLDYHRTMEAYFQAKATLFERVMPQGAVAVLNADTPQFEALAALCRSRK-QTVIG 263

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G+ +  +  L   +       +E+++ G    +    +G     N L  LG+V     D
Sbjct: 264 YGE-RGRELALHSARPLPHGQQVEIEVFGTRHSLELPLVGNFQLWNALCALGLVIGSGED 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A   L+      GR       L  G    +D  Y   P  ++   +VL  + PH  G
Sbjct: 323 PAAATAQLARLEGVRGR-LDLVARLKNGAAVYVD--YAHTPDGLE---TVLKALRPHTVG 376

Query: 370 RRIAVLG 376
           R +AV G
Sbjct: 377 RLVAVFG 383


>gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
 gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
          Length = 480

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 175/409 (42%), Gaps = 55/409 (13%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-- 127
           +N   V     L IPV         ++++ + + L      IAI G+ GKTTT  MLT  
Sbjct: 91  INNPEVQQAKRLKIPV---------IHRVKILSELMRYKYGIAIAGTHGKTTTVSMLTNI 141

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
              + +  T+   G   +  GV    AR+    DF I E   S    +R       P +A
Sbjct: 142 YVEAGLDPTFVNGGIIRSQ-GVS---ARLGYGNDF-IAESDESDKSFLRLC-----PVVA 191

Query: 188 VITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           VIT I   H++ +    E +     +  + L   G   +  DD     +  + +    + 
Sbjct: 192 VITNIDTDHMNTYHQNFEYLQEVFIKFLDKLPMYGYAVVCIDDPVVRKILPRIN----RK 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I ++G SK+A   + K+ Q  E+S   + ++  K ++VV +  GYH A N   ++  V+I
Sbjct: 248 IITYGFSKDATLCIVKYYQYREKSNFTILIKNNKELQVVLNTPGYHNALNAAASIA-VAI 306

Query: 306 LTADVDTAI-KALSVFHPKEGRGKRYRCALNQ---------GFFTLIDESYNANPASMKA 355
                DT I K++S F    G  +R+    N          G   +ID+ Y  +PA +++
Sbjct: 307 EEGIRDTVILKSMSNF---TGTNRRFEFLGNYPLNIINGRVGKVMVIDD-YGHHPAELRS 362

Query: 356 A-ISVLSQISPHGEGRRIAVLG--DMCEMGELSQSF-----HIDLAEVLSLYNISHVWLS 407
             I++ +  S H   R + V          EL  +F      +D+  +L +Y+     + 
Sbjct: 363 TIIAIRTGWSDH---RLVMVFQPHRFTRTHELYDNFVRVLSTVDVLLMLDIYSAGEQPIM 419

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNS 454
           G +  +L D++ +   V      +  FL  F+ + L D D+++++ + +
Sbjct: 420 GINAQSLCDSILKYAKVQPIFVQNECFLLKFLMNLLRDKDLLLIQGAGT 468


>gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 492

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G + D+R + P + FFAI G    G  +   AV  GA  V+ +TD  A   +  +PV 
Sbjct: 28  ITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDTDG-ADFVTADVPVI 86

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            + DV   +  +A A       K T  A+TG+ GKTTT  M+   L+++ +T   IG+
Sbjct: 87  ILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDHILNTLGETTGLIGT 144


>gi|229270471|ref|YP_975688.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           FAM18]
 gi|229597116|ref|YP_001599824.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           053442]
 gi|189029221|sp|A9M2H2|MURC_NEIM0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325198895|gb|ADY94351.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           G2136]
 gi|325202766|gb|ADY98220.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240149]
          Length = 468

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 386

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 387 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 446

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 447 LNMGAGSIN--RVPAALLE 463


>gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 482

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 171/437 (39%), Gaps = 86/437 (19%)

Query: 59  HAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI------ 110
           HA +   GA +VVV++ + A           V+ V     ++ V  R +  A I      
Sbjct: 76  HAAENIDGASVVVVSSAIRAD---------NVEVVAAQERRIPVIQRAQMLAEIMRFRHG 126

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  M+++  A + +  T+   G       N H+G    L     + D  
Sbjct: 127 IAVAGTHGKTTTTAMISMIYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 186

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P ++V+T I P H+  + G  EE+          L   G 
Sbjct: 187 FLHL---------------QPMVSVVTNIEPDHMETYHGSFEEMKHTYVNFLHNLPFYGL 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             L  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q  +  +   G+ +
Sbjct: 232 AVLCADDDVLTELTPK---VG-RQVITYGFSEKADYRIEDYQQTGFQGHYTVITPSGERI 287

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336
           +V+ +  G H A N    L +        +  + AL+ F   +G G+R+   L Q     
Sbjct: 288 DVLLNVPGRHNALNATAALVVAKEEGIGNEAILAALADF---QGAGRRFD-QLGQFIRPN 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  LSQ
Sbjct: 344 GKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIAMIFQPHRYSRTRDLFDDFVQV--LSQ 400

Query: 387 SFHIDLAEVLSLYNISHVWLSG---------FHVLALKDALPRSIHVHYSETMDGLFLFI 437
              +D+  +L +Y      ++G            L   D +  S H    E +D +    
Sbjct: 401 ---VDVLIMLDVYAAGETPIAGADSRSLCRSIRNLGKVDPIFVSDHRQLGEILDQV---- 453

Query: 438 QSSLVDGDVVVVKSSNS 454
              L DGD+++ + + +
Sbjct: 454 ---LQDGDLILAQGAGN 467


>gi|89100115|ref|ZP_01172984.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
 gi|89085205|gb|EAR64337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
          Length = 431

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 130/329 (39%), Gaps = 47/329 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K T +A+TG+ GKT+T  +L   +   K T   IG             R   D ++ +F
Sbjct: 99  KKFTSVAVTGAHGKTSTTGLLAHVMKGAKPTSFLIGD---------GTGRGDADAEYFVF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F+ I+++ SA  E+   + K   I
Sbjct: 150 E-----ACEYRRHFLSYF--PDYAIMTNIDFDHPDYFANIDDVFSAFQEMSWQVNK--GI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F   DD   + ++AK   L     Y FG+    DFQ R   + +E +  +V ++    + 
Sbjct: 201 FACGDDEQLQKIQAKVPVL----FYGFGEEN--DFQARNVIKSTEGTTFDVFVRNTFYDT 254

Query: 284 VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +      D +     L  F      G + R +  +    +I
Sbjct: 255 FSIPQFGDHNVLNSLAVIALCHYEEIDSEIVKDLLLTF-----EGVKRRFSEKKVASQVI 309

Query: 343 DESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            + Y  +P  ++A +    Q            PH   R    L D  E   L+++  + L
Sbjct: 310 IDDYAHHPTEIRATVEAARQKYPEKEIVAVFQPHTFTRTQTFLDDFAE--SLNKADKVYL 367

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS 421
            ++      +H  L+   +  L+D +P S
Sbjct: 368 CDIFGSARENHGKLT---ITDLQDRIPSS 393


>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
 gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
          Length = 496

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 15/218 (6%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +G+ E+    L + R         +AV T +   HL     +E+  +AKA++F      G
Sbjct: 180 YGVMEVSSHALAQRR--VQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAEYLKG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N DD + + L     +L  + ++S+  S  +A+F  R    C E + +   L    
Sbjct: 238 KAIINLDDPYGKRL---IDSLSREKVWSYSVSDSSANFYTRDL--CYEANGVSGILHTPI 292

Query: 281 MEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            EV  +   +G +   N+L  +G V  L  D+   ++ L +F    GR +R   +  Q  
Sbjct: 293 GEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDI 352

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             ++D  Y   P S++   ++L    P  EGR I V G
Sbjct: 353 SVIVD--YAHTPDSLE---NLLKAARPFIEGRMICVFG 385


>gi|269215182|ref|ZP_05987878.2| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
 gi|269208127|gb|EEZ74582.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
          Length = 469

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCV 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDAADIYATDIENVGAQMKFTVHVQMKGHEQESFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 448 LNMGAGSIN--RVPAALLE 464


>gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
 gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
          Length = 470

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 136/329 (41%), Gaps = 41/329 (12%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140
           ++P+    ++LG L        + +  T +AI+G+ GKTTT  ML+ IAL++        
Sbjct: 104 NLPMLSRAELLGQL--------MTNYKTPVAISGTHGKTTTTSMLSHIALAA-------- 147

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            + +  I V   L  +  ++  G  +L ++   E         P I +I  +   HL  F
Sbjct: 148 -NLDPTISVGGILKAIEGNIRVGGPDLFITEACEYTNSFLHFSPKIGIILNVDADHLDFF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +++I ++     + L + GT+ +N D    E + +    L  + I +FGK  + D+  
Sbjct: 207 KDLDDIRNSFHLFAKLLPENGTLVINGDIDKIEEITSD---LSCRVI-TFGKEASLDYSA 262

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 +EQ      +      V H  +   G H   N L  + +  IL    +T    L
Sbjct: 263 ANITY-NEQGNASFDVVKDGQNVAHLALAVGGEHNVYNALAAIAVADILGVPAETIQTGL 321

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGE 368
           + FH   G  +R+      G  T+ID+ Y  +P  + A +   +            PH  
Sbjct: 322 ASFH---GTDRRFEYKGEVGGVTIIDD-YAHHPTEIAATLKSAAHYPHKKLWCIFQPHTY 377

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            R  A+  +  E   L+ + H+ LA++ +
Sbjct: 378 TRTKALFSEFAEA--LAHADHVILADIYA 404


>gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 26/220 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           S+A  I ITGS GKTTT  ++   L   +K     G    +IGV    +A+     ++ +
Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG----NIGVAACEVAQKAEANNWLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  IR      RPHI+V+  I  AHL      E  A AKA IF+         
Sbjct: 166 TELSSFQLAGIRDF----RPHISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280
           +N DD    +++   ++   K I+S  K  ++   ++     W   +  +  ++ L GK 
Sbjct: 222 VNADDEL--VMRLAENSCAQKVIFSATKKLDSGAYIKDGWIYWNDEAVIAVSDIVLPGK- 278

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                     H  +N+L  + +  +   D     K L+ F
Sbjct: 279 ----------HNLENILAAVAVAKLTGVDNKAIAKVLTTF 308


>gi|125625078|ref|YP_001033561.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166224698|sp|A2RNJ0|MURC_LACLM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124493886|emb|CAL98880.1| UDP-N-acetyl muramate-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071883|gb|ADJ61283.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 443

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  ML   +S+I  T   IG             R     ++ +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGNAGSEYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P   ++T I   H   F GIE++ SA  +    ++K   IF   +
Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L AK+       IY +G   N D++     + +  S  +   +G+ +   V   
Sbjct: 208 DVNLRKLSAKA------PIYYYGFEANDDYRAENLIRSTRGSSFDAYFRGEKIGHFVVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D+      L  F     RG + R    +   T+I + + 
Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTDVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381
            +P  ++A +    Q            PH   R IA   +  E+
Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360


>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
 gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
          Length = 445

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADVVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  K +IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   S  ++ LQG
Sbjct: 252 ETGRLKQGNEDLISTQDIPLQG 273


>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
 gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
          Length = 441

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 30/202 (14%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVV--------VNTDMVASIGSLSIPVFGVDDVLGA- 94
           F  K P     DF   AV+ G  L V           DMV  + S  I   G+ D L A 
Sbjct: 40  FLEKNPKSVADDFRAEAVEAGYDLRVGAHGPADFAGADMV--VLSPGIRAAGLADCLAAC 97

Query: 95  -----LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                L++L +A+   ++  I+A+TGS GKTTT  +++  L +  +     G    +IG 
Sbjct: 98  PGAQVLSELELASWFVTE-PIVAVTGSNGKTTTVMLVSHLLEAAGRKVFTGG----NIGT 152

Query: 150 PLT---LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           PL+   LA  P DV   + E+    L     L    RP +AV+   +P HL   + +EE 
Sbjct: 153 PLSEYVLAGDPADVV--VLEVSSFQLQ----LVKSFRPKVAVLLNFSPNHLDWHADLEEY 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYD 228
            SAK  IF       T  L  D
Sbjct: 207 LSAKLNIFAAQRPGDTAILPRD 228


>gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
 gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
          Length = 488

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 54/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           V  ++ DSR + P   F A+ G   DG  F   A   GA  +V       D+  ++  LS
Sbjct: 23  VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQAAAAGAVAMVAEGPRPADLPQAVAYLS 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P     D   AL   A        AT++A+TG+ GK++  + +   L+ + +  A +G+
Sbjct: 83  VP-----DARRALALAAARLHPGQPATVVAVTGTSGKSSVADFVRQILARLGRRSASLGT 137

Query: 143 YN---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184
                            + + +  TL R+  D   GI +L M   SH  E R L   VR 
Sbjct: 138 LGVVTGEGAAYGALTTPDPVTLHETLDRLARD---GITDLAMEASSHGIEQRRLDG-VRL 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYD----DSFFELLKAKS 239
             A  T +   HL     +E   +AK  +FE L   G T  +N D    D     ++A+S
Sbjct: 194 TAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAIVNADGPMADRAVAAIRARS 253

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             L + T    G++   D  + R + Q      + +  QG+++ V    +G +  +N L+
Sbjct: 254 --LPLVTTGRAGETLRLDAVETRGFAQ-----RLTLAAQGRALTVDLPLVGSYQVENALV 306

Query: 299 TLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
              +V    A    ++  I AL   H     G+  R A ++G   ++D  Y   P ++  
Sbjct: 307 AAALVLATPAGRGRLEAVIGALG--HLAGVPGRLERVATHRGALCVVD--YAHKPEALA- 361

Query: 356 AISVLSQISPHGEGRRIAVLG 376
              VL  + P   GR + V+G
Sbjct: 362 --GVLQALRPFATGRLVCVMG 380


>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-66c26]
 gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CIP 107932]
 gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-76w55]
 gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-97b34]
 gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-37x79]
 gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CD196]
 gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile R20291]
 gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-32g58]
 gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile CD196]
 gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile R20291]
          Length = 484

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 45/269 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N +  +SR +     F  IKG   DGH +I  A++KGA   +V  D V   G   I   
Sbjct: 23  INNVQYNSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEED-VEIKGCTFIK-- 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V D    + K+A         K  +I +TG+ GKT+   +L   L+  K     IG+  
Sbjct: 80  -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138

Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
                                  +NN +        M V        L ++ + E  F  
Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 + + T + P HL     +E+   AK ++F   + T    +N DD   + +    
Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268
             + +   Y++G    ADF  R  K  S+
Sbjct: 246 KGINV-PCYTYGVDTKADFMARDIKSDSD 273


>gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 428

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 28/225 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGS 80
           V+ + +DSR+I   ++F AI G   DG  FI  AVQ GA  V+   D       V  IG 
Sbjct: 32  VSNLELDSRAIQQGDSFVAIIGHTVDGRLFIERAVQAGATSVLAQADSEHKHGEVTYIGE 91

Query: 81  LS-IPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +  I ++ +D +L       +AARL + +  +I +TG+ GKTT  +++   +  +    A
Sbjct: 92  VPIIHLYQLDTLLS-----VIAARLYQYQQQVIGVTGTNGKTTITQLIAQWIGLLGDKAA 146

Query: 139 CIGSYNNHIGVPLTLAR----MPVDVDFGIFELGM--SHLGEIRFLTH-LVRPHIAVI-- 189
            +G+  N     L  A+      +DV   + +L    +H   +   +H LV+  +A +  
Sbjct: 147 IMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQGAHYTAMEVSSHGLVQGRVAAVPF 206

Query: 190 -----TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                T ++  HL     +E   +AK  +F G      + LN DD
Sbjct: 207 KLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGHHCEHAV-LNIDD 250


>gi|313667818|ref|YP_004048102.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ST-640]
 gi|313005280|emb|CBN86713.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica 020-06]
          Length = 469

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 146/361 (40%), Gaps = 44/361 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 V 448
           +
Sbjct: 448 L 448


>gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured
           Prochlorococcus marinus clone HF10-88F10]
          Length = 511

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 151/393 (38%), Gaps = 42/393 (10%)

Query: 19  IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT- 72
           +GI+P        +N IS +S+ +     F  + G + DG  F + A++ GA   ++ + 
Sbjct: 13  VGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGSA 72

Query: 73  --DMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLT 127
             + +ASI    I V  ++D L  +    VA    R   K  +I +TG+ GKTT   +L 
Sbjct: 73  AKERIASIDRERILV--IEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTITFLLE 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFGIFELGMSH 171
             L  + K  A  G+  N       +A    D                 +F I E+    
Sbjct: 131 YLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILEVSSHS 190

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYD 228
           + + R          A+ T     HL   S +E     K ++F      EK G   LN+D
Sbjct: 191 IAQKRISG--CEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGICVLNHD 248

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVH 285
           D +   L +  +  +  + T  +  + +N DF     K+ +E  S        + +++  
Sbjct: 249 DHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQLFV 308

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL--ID 343
             +G     N +  + I+  L   +    K +  F    GR ++ +   N    +L  I 
Sbjct: 309 PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSRSLPTII 368

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P  +K    VL  I    EG+ I V G
Sbjct: 369 VDYAHTPDGLK---KVLQSIKKLCEGKLITVFG 398


>gi|189029013|sp|A1KVL2|MURC_NEIMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120867149|emb|CAM10916.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis FAM18]
 gi|254671167|emb|CBA08261.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha153]
 gi|261391937|emb|CAX49399.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis 8013]
 gi|317164855|gb|ADV08396.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           TCDC-NG08107]
 gi|325134890|gb|EGC57523.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M13399]
 gi|325138957|gb|EGC61507.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           ES14902]
 gi|325142977|gb|EGC65334.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           961-5945]
 gi|325208762|gb|ADZ04214.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           NZ-05/33]
          Length = 469

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+   LLE
Sbjct: 448 LNMGAGSIN--RVPAALLE 464


>gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate
           ligase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 29/255 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GI+ DSR++ P + + A+ G    G DF+  A   GA  ++ +        +  +PV 
Sbjct: 76  ISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAAAILTDPTGAERAAATGLPVL 135

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V++  G + +LA     R  A +  I ITG+ GKTTT  ++   L         +G+  
Sbjct: 136 VVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAYLVEGGLRGTGHHTGLVGTVE 195

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SH---LGEIRFLTHLVRPHI 186
             IG     +    P   D           G+  + M   SH   LG +          +
Sbjct: 196 MRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVSSHALVLGRVDGCVF----DV 251

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV   ++P H+   S +E+   AKA +F   E++    +N DD++   L  ++       
Sbjct: 252 AVFNNLSPEHMEFHSDMEDYFQAKAGLFT-PERSRLGVVNLDDAYGRRLVGEATV----P 306

Query: 247 IYSFGKSKNADFQLR 261
           + +F     AD   R
Sbjct: 307 VLTFSAEGRADADWR 321


>gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21]
 gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21]
          Length = 461

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 137/363 (37%), Gaps = 58/363 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M+   LS   I  T   IG   N +G    L +       G F + 
Sbjct: 108 IAVAGTHGKTTTTSMVATILSKGGIDPTI-VIGGRLNSLGTNARLGQ-------GQFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL  L+ P IAV+T I   HL  +SGIEEI     E    +   G   L  D
Sbjct: 160 EADESDGSFL--LLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     +  +      K   S+G S  ADF+             +V+L G S   V H  
Sbjct: 218 NGNVADVLPRVK----KRFTSYGLSAQADFR-----------ATDVRLSGFSTSFVAHHK 262

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE----------GRGKRYRCALNQGF 338
           G  + +      G  ++L A    A+ A+ +  P E          G G+R+        
Sbjct: 263 GVRLGEITFSMPGAHNVLNALAAIAV-AMELDIPFETIQEGFAGFGGVGRRFHLKGEANG 321

Query: 339 FTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSF 388
             ++D+ Y  +P  +KA +                 PH   R   +  D        ++F
Sbjct: 322 IMVVDD-YGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEDFV------KAF 374

Query: 389 H-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGD 445
           H  D+  +  +Y      + G    AL + + R     V +    D L   ++  L  GD
Sbjct: 375 HDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVLAPGD 434

Query: 446 VVV 448
           +++
Sbjct: 435 ILL 437


>gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
 gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
          Length = 499

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 28/274 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  M+  AL  I    +  IG     +G   T AR+     F + E  
Sbjct: 125 LVAVAGAHGKTSTSSMMAHALLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL +   P + VIT I P HL ++        A  +    L K G + L  D
Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSAAAFEQAFVDFTGRLRKGGALVLCAD 235

Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281
           D+      E + A+  A G + I Y FG     D   QL + +    +   +V +     
Sbjct: 236 DAGVKRLAEQVSARGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295

Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +V H  +     G HM  N    LG   +L  D+   I AL  F    G  +R +    +
Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTF---SGADRRMQPVGER 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + D+ Y  +P  + A +     ++  G+GR
Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383


>gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1]
          Length = 459

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 39/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  L + +         +  I V   L+ +  ++  G  E  +S
Sbjct: 114 IAVAGTHGKTTTTSMISEILLAAQT--------DPTISVGGILSSIHGNLRVGDSEYFIS 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E        RP  ++I  I   HL  F  I +I  +  E        G   +N +  
Sbjct: 166 EACEYTNSFLNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID 225

Query: 231 FFELLKAKSHALGI-KTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVH 285
            +E + A     G+ + I ++G     DF         K C+  + M    QG  +  V 
Sbjct: 226 RYEEIVA-----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMR---QGSPLFDVK 277

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             + G H   N L  + + + L  D ++ +  L  F    G  +R++        T+ID+
Sbjct: 278 LSVPGAHNVSNALAAIALSTTLGLDTESILTGLDKFG---GADRRFQYKGKVNGVTIIDD 334

Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  ++A ++   +           PH   R  A L D  ++  LS +  + LA++
Sbjct: 335 -YAHHPTEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADV--LSMADVVVLADI 391

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    +   +S   +L L   L + ++ HY  + + +  F+  + V+GD+++ 
Sbjct: 392 YAAREQNTYGISSKDILDL--LLEKGVNAHYFPSFEEIEKFLSENCVNGDLLIT 443


>gi|239828070|ref|YP_002950694.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. WCH70]
 gi|259509774|sp|C5D6B2|MURC_GEOSW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239808363|gb|ACS25428.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. WCH70]
          Length = 433

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 137/334 (41%), Gaps = 55/334 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +PV      LG             K T IA+TGS GKT+T  +L   +  +  T   
Sbjct: 82  ELGVPVIRYHRFLG---------EFLQKFTSIAVTGSHGKTSTTGLLAHVMQGVHPTSYL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG   +  G  +  ++      + +FE       E R  FL++   P  A++T I   H 
Sbjct: 133 IG---DGTGKGIEGSK------YFVFE-----ACEYRRHFLSYF--PDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F+ I+++ SA  E+   L+    I    DD + + ++AK   L     Y FG   + D
Sbjct: 177 DYFANIDDVFSAFQEM--ALQVKKGIIACGDDEYLQKIQAKVPVL----FYGFG--DDND 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           FQ R   + +E +  +V ++     S E+ H   G H   N L  + +      DV    
Sbjct: 229 FQARNVVKTTEGTAFDVFVRNTFFASFEIPH--FGDHNVLNALAVIALCHYEEMDVRIIQ 286

Query: 315 KALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           + L  F   +G  +R+   +  NQ    LID+ Y  +P  + A I    Q  P   GR I
Sbjct: 287 ERLKTF---QGVKRRFSEKVLGNQ---ILIDD-YAHHPREIIATIDAARQKYP---GREI 336

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         +Q+F  + AE  SL     V+L
Sbjct: 337 VAIFQPHTYTR-TQTFLREFAE--SLQQADQVYL 367


>gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus haemolyticus JCSC1435]
 gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 449

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIAITG+ GKTTT  ++      + K     G  + +IG V   +A+     ++
Sbjct: 107 LISEAPIIAITGTNGKTTTSSLI----GDMFKKSRLTGRLSGNIGYVASKVAQETSPNEY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L          RPHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LITELSSFQL----LGVEQYRPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTENDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRHLIESENLKAKT 238


>gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
 gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
          Length = 488

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 53/371 (14%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI G+ GKTTT  ++ ++   + +     IG   N  G   T AR+        + +  
Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++V+T I   H+  + G  E++ S   +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
           D     +  +      + I ++G   +AD Q   + Q   Q    V+ +GK  ++++ + 
Sbjct: 234 DPVVREIMPRIS----RHIVTYGFRDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343
            G H   N L  + + +    D    I+AL+ F   +G G+R+    + A  +G   L+D
Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346

Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I           ++    PH   R   +  D  E+  LSQ   +D  
Sbjct: 347 D-YGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGD 445
            +L +Y+     + G    A   AL RSI +     +D +F+         +   L +GD
Sbjct: 401 LLLDVYSAGEAPIPG----ADGRALCRSIRLRGQ--LDPIFIASPEQLAEVLPDVLQEGD 454

Query: 446 VVVVKSSNSCG 456
           +++ + + + G
Sbjct: 455 LLLTQGAGNIG 465


>gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 499

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 28/274 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  M+  +L  I    +  IG     +G   T AR+     F + E  
Sbjct: 125 LVAVAGAHGKTSTSSMMAHSLLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL +   P + VIT I P HL ++        A       L K G + L  D
Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSAAAFEQAFVNFTGRLRKGGALVLCAD 235

Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281
           D+      E + A+  A G + I Y FG     D   QL + +    +   +V +     
Sbjct: 236 DAGVKRLAEQVSARGDADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295

Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +V H  +     G HM  N    LG   +L AD+   I AL  F    G  +R +    +
Sbjct: 296 QVFHGQLNLRIGGKHMLLNAGGALGAAYVLGADLSQFIAALRTF---SGADRRMQPVGER 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + D+ Y  +P  + A +     ++  G+GR
Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383


>gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
          Length = 491

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 139/370 (37%), Gaps = 30/370 (8%)

Query: 26  FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           +V G +  DSR + P +AF A  G   DG  F+  A+  GA   +V  D V + G     
Sbjct: 19  WVTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFEDAR 78

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  + D+      +A A       +  ++A TG+ GKT+T      AL+ + +    +G+
Sbjct: 79  VATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGVMGT 138

Query: 143 YN-------NHIGV----PLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                       G+    P+TL    R  VD  F    L  S +G +          +A+
Sbjct: 139 LGVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEIDVAL 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T     HL     +     AK  +F   GL+      +N DD     L A+  AL    
Sbjct: 199 FTNFTRDHLDYHGTMAAYWEAKRRLFAWPGLKAA---VINVDDEQGARLAAEPLAL---D 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++++  +  A    R  +         +     ++EV    IG +   N+L  LG +  L
Sbjct: 253 VWTYAVNGAARLVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRAL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A   +    P  GR +R       G    +   Y   P +++  +  L  ++  
Sbjct: 313 GVALADAAAVVPALTPVPGRMQRV-----PGEHVEVVVDYAHTPDALEKVLQALRPLAAA 367

Query: 367 GEGRRIAVLG 376
             GR   V G
Sbjct: 368 RGGRLWCVFG 377


>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
 gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
          Length = 467

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 182/434 (41%), Gaps = 59/434 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL-VVVNTDMVASIGSLSIPVFGVDD 90
           ID+R   P        G      D +LH  + G  L  ++N D+V +   +++    +  
Sbjct: 65  IDTREAPP--------GQEQLSSDVVLH--RSGWNLEWLLNADLVVTNPGIALATPEIQQ 114

Query: 91  VLGALNKLAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VL A   +     L +      +IAITGS GK+T  + L+  L++     A +G    +I
Sbjct: 115 VLAAGIPVVGDIELFAWHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNI 170

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP  L  +  DV+  + EL    L      T  ++   A    ++  H+  + G+E+  
Sbjct: 171 GVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYR 225

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK  IF+  E   T  +N DD+         HA  ++ + +FG  + A F L +  Q  
Sbjct: 226 QAKLRIFDHAE---TAVVNADDT----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGR 276

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E  +   +      E+    +G H   N+L  L ++     +   A+ AL     K   G
Sbjct: 277 EYLFARDEAVMACAEL--SLVGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTG 329

Query: 328 KRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             +RC   A N G    +++S   N AS  AA+S L       EG+   ++G + +  + 
Sbjct: 330 LTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADF 383

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +      LA VL+   +    L  F V      +P      + ++M+ +   I+  L  G
Sbjct: 384 TP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSG 434

Query: 445 DVVVVKSSNSCGFY 458
           D+V++  S +C  +
Sbjct: 435 DMVLL--SPACASF 446


>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
 gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
          Length = 489

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 140/360 (38%), Gaps = 41/360 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR +AP   FF +KG   DGHDF   AV + A  +V    +     S+ +PV  V 
Sbjct: 26  LEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARKAAAIVAERPL-----SVDVPVVLVS 80

Query: 90  DVLGALNKLAVA--ARLRSKATII------------AITGSVGKTTTKEMLTIALSSIK- 134
           D   A+  LA A   R   +  +I            +I   + +   K+   I    IK 
Sbjct: 81  DSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKV 140

Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             ++Y    +    + +  T  +M VD  V+F   E+    L + R   H     +AV T
Sbjct: 141 GDRSYPAANTTPESLILQRTFKQM-VDEGVEFVAMEVSSHALHQGR--VHGCDYDVAVFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   HL     +EE  +AK  +F  L       +     LN+DD   +  K  + A   
Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I ++G  + +D    + +  +      +     S  V    +G     N+L       
Sbjct: 255 -PIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETKLVGSFNVYNILAAAAACL 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T   AL+   P  GR +       Q F  ++D  Y   P S++ A+  + Q++
Sbjct: 314 ASGFSLETIAAALADVEPVPGRFE--TVDEGQNFTIIVD--YAHTPDSLENALKTVRQLA 369


>gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 493

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 149/375 (39%), Gaps = 40/375 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASI 78
           + G+++DSR +     F A+ G    G +FI  A++ GA  ++ +         ++ AS 
Sbjct: 23  ITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTDARGAEIAADELAASD 82

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT----------TTKEMLTI 128
            +L +     +D   AL   A         TI+A+TG+ GKT          T  ++  +
Sbjct: 83  AALIV----TEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVRQIWTELDLAAV 138

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFL--THLV 182
            L +     A      +    P+TL R   +  + G+    M   SH  E R L   HL 
Sbjct: 139 NLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGLEQRRLDGVHLT 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241
               A  +     HL      E   +AKA +F+  L + G   +N  D     ++  + A
Sbjct: 199 ---AAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGAEMRRIAEA 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + I + G  + AD  L   +  +    +    +GK  +   + IG   A+N+L+  G
Sbjct: 256 RG-QNILTVGP-EGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAENVLLACG 313

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V     D D     L       GR  +     + G    +D ++  +     A  + L 
Sbjct: 314 LVIAAGEDPDRVFDTLPHLTTVRGR-MQLAATRSNGAAVFVDYAHTPD-----AVATALK 367

Query: 362 QISPHGEGRRIAVLG 376
            + PH  GR IA++G
Sbjct: 368 AMRPHVMGRLIAIVG 382


>gi|145220556|ref|YP_001131265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189082914|sp|A4SH04|MURD_PROVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145206720|gb|ABP37763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 465

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 16/134 (11%)

Query: 107 KATIIAITGSVGKTTTKEM---LTIALSSIKKTYAC-IGSYNNHIGVPLT--LARMPVDV 160
           +A I+ ITG+ GKTTT  +   +  A  S++   A  +G    +IGVP +  +  M  + 
Sbjct: 107 RARIVGITGTDGKTTTATLVHDIAAAEGSLRGNRAWGVG----NIGVPFSAMVGEME-EG 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D  + EL    L   R +T   RP ++V+T I P HL  + G +E  A+AK  I    ++
Sbjct: 162 DTAVVELSSYQL--ERCVTF--RPDVSVLTNITPDHLGRYDGSMERYAAAKFRICMNQKE 217

Query: 220 TGTIFLNYDDSFFE 233
             T+  N DDS  E
Sbjct: 218 GDTLIYNADDSLLE 231


>gi|302036133|ref|YP_003796455.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
 gi|300604197|emb|CBK40529.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
          Length = 460

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 166/430 (38%), Gaps = 65/430 (15%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           + +   N ++VA+  +  IPV    ++L  L +L            +AI G+ GKTTT  
Sbjct: 72  SAVAATNPEVVAA-KARQIPVIPRAEMLAELMRLKFG---------VAIAGAHGKTTTTS 121

Query: 125 MLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           M+   +A   +  T   IG   N +G    L R     D  I E   S    +R      
Sbjct: 122 MVANVLAQGGLDPTM-VIGGKVNALGSHARLGRG----DLLIAEADESDGSFLRLA---- 172

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IA +T I   HL ++  +E++  +  E    +   G   L  DD     L  +    
Sbjct: 173 -PTIAAVTNIDREHLDHYGSMEKLNDSFLEFVNKVPFYGLAVLCSDDERLRNLLPRV--- 228

Query: 243 GIKTIYSFG---------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292
            +K   ++G           +  D  LR+W      S   V  +G+++      I G H 
Sbjct: 229 -VKRYQTYGLHEHPGHVPDFRATDISLRQWG-----SEFRVFFRGRNLGPFRLSIPGIHN 282

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L+ + I   L   VD   K L+ F    G  +R+     +    ++D+ Y  +P  
Sbjct: 283 VSNSLVAIAIGMELDIPVDLIRKGLAAF---SGVERRFHLRGEKAGIMVVDD-YGHHPTE 338

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFHIDLAEVL---SLYNIS 402
           ++A I+   Q    G  RR+ VL            M E + +F  D A+ L    +Y   
Sbjct: 339 VRATIAAAKQ----GWDRRVVVLFQPHRYSRSRDLMQEFAHAF--DQADALFMTEIYAAG 392

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              + G     L +A+  + H    + E  D +   +  +L  GD+V+   +     ++ 
Sbjct: 393 EQPIPGVSGAKLVEAVQAAGHPSATFVERKDTMAEQVLPTLKSGDLVITLGAGD--IWKT 450

Query: 461 INLLLEEFPA 470
              +LE  PA
Sbjct: 451 GLAILERLPA 460


>gi|53803416|ref|YP_114845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
 gi|62900496|sp|Q604V5|MURD_METCA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53757177|gb|AAU91468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
          Length = 459

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V G L+  A   R    A ++AITG+ GK+T   ++ +    + K      +   ++G P
Sbjct: 111 VFGDLDLFACCVR----APVVAITGANGKSTVTTLVGL----MAKAAGVNAAVGGNLGTP 162

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L  +    +  + EL    L      + L    +A +  I+P H+  +  +   A AK
Sbjct: 163 M-LDLLDAAAELYVLELSSFQLER----SELFEADVATVLNISPDHMDRYPDLASYAEAK 217

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQ 269
             +F G    G + LN DD     L A  +  G + + +  G     D+ L +W+    +
Sbjct: 218 RRVFRG---EGLMVLNQDDP----LVAAMYRPGRRAVRFGLGSGDELDYSLARWEG---R 267

Query: 270 SWM-----------EVQLQGK 279
           +W+           EV+++G+
Sbjct: 268 AWLLAKGVPLLPADEVRIKGR 288


>gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
 gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
          Length = 491

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 23/227 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F++ +++DSR+I   + F A+ G   DG  FI  A+ +GA  V+V+TD     G + +
Sbjct: 17  QTFLD-LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIV 75

Query: 84  PVFGVDDVLGALNK-LAVAARLRSKAT------IIAITGSVGKTTTKEMLTIALSSIKKT 136
              GV      L K ++  A +R          I+ ITG+ GKT+T ++    ++ +   
Sbjct: 76  AEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGK 135

Query: 137 YACIGSYNNHI-----------GVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLV 182
            A +G+  N +              +TL R   +  + G+    M  S  G ++     V
Sbjct: 136 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDAV 195

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +AV T +   HL     +E  A+AK  +F   +      LN DD
Sbjct: 196 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR-FDSLRHGLLNLDD 241


>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
 gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
          Length = 499

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 33  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 91  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 378 TTGRVIVVFG 387


>gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida W619]
 gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619]
          Length = 496

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 162/403 (40%), Gaps = 48/403 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++   + F A+ G   DG D I  A+ +GA  V         +    +P+
Sbjct: 18  LIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDALARGAAAVAYEQQGTHVLPITDVPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++  L+   +A R   + +    ++ +TG+ GKT+  +++  AL ++ +    IG
Sbjct: 78  IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDALGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEI--RFLTHLVRP--------HIA 187
           +        L   R+    P+ V   +++L  +    +     +H +           IA
Sbjct: 136 TLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA----KSHA 241
           V+T ++  HL     +E   +AKA++F   GL       +N DD F   L A    +   
Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLFAWPGLR---CQVVNLDDGFGRRLAADFARRPSV 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMAQ 294
             I+T       +N+D  L     C E  + +       V  QG+   +    +G     
Sbjct: 253 DHIETRLLSYSLENSDASL----YCREAKFDDDGVRAIIVTAQGERT-LRSQLLGRFNLS 307

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           NML  +  +  L   +D  +K         GR +R    L  G   L+   Y   P +++
Sbjct: 308 NMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQR----LGGGEKPLVVVDYAHTPDALE 363

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               VL  + PH  G+ + + G   +     +    ++AE L+
Sbjct: 364 ---KVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLA 403


>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
           melitensis biovar Abortus 2308]
 gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
          Length = 488

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
 gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
          Length = 474

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 148/359 (41%), Gaps = 41/359 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR  +    F A  G   DG  FI  A+  GA  V+   +     G    P + V
Sbjct: 13  GMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQE-----GFDWNPAWTV 67

Query: 89  D--DVLGALNKL-AVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           D   V G   +  A+A +     +    +I +TG+ GKT+    L  A +++++    IG
Sbjct: 68  DHQPVTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIG 127

Query: 142 SYNNHIGV-----------PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  N               P+ L  M  D      +    E+    L + R   + +   
Sbjct: 128 TLGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGR--VNGIDFK 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL     +   A AK ++F          LN DD+F   L ++  A G K
Sbjct: 186 VAVLTNLTRDHLDYHGDMASYADAKRKLFH-FGGVQAAILNQDDAFGRALLSELKAKG-K 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG-IGYHMAQNMLMTLGIV 303
            + S+G S   D         +E   M+V   QG++M  VH   +G   A N+L  L  +
Sbjct: 244 HVLSYGLS-GGDVCGHDLHFDAEGLHMQVHTPQGEAM--VHAKLVGRFNASNLLAVLATL 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 ++ A++ L+   P  GR ++    L  G   L+   Y  +P +++ A++ L +
Sbjct: 301 LASEVALEDAVRVLADIRPAPGRMQQ----LGGGGQPLVVVDYAHSPDALEKALNALRE 355


>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG  + A F L     R++    +++ M   E+ L     
Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419


>gi|322378887|ref|ZP_08053304.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
 gi|322380387|ref|ZP_08054593.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321147177|gb|EFX41871.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321148697|gb|EFX43180.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
          Length = 464

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168
           IIAITGS GKT+ K  L   L      Y+ + S N  +G+   + + +       I E G
Sbjct: 140 IIAITGSFGKTSVKNYLYQILQGKFTIYSSLNSVNTLLGLSQDINQNLDETSTLYIAEAG 199

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               G+I+ +  L+  H A+IT I   H+  F  I+ I   KAE+ + 
Sbjct: 200 ARQKGDIKAIGSLLEHHYAIITEIGNQHIEYFKDIDSIYETKAELLQS 247


>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
 gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
          Length = 445

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQRESKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
 gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
          Length = 467

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 182/440 (41%), Gaps = 71/440 (16%)

Query: 32  IDSRSIAP-QEAFFAIKGPHYDGHDF--ILHAVQKGAGLVVVN------TDMVASIGSLS 82
           ID+R   P QE   +    H  G +F  +L+A      LVV N      T  +  + +  
Sbjct: 65  IDTRETPPGQEQLSSDVALHRGGWNFEWLLNA-----DLVVTNPGIALATPEIQQVLAAG 119

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV G  ++                  +IAITGS GK+T  + L+  L++     A +G 
Sbjct: 120 IPVVGDIELFA----------WHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG- 167

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +IGVP  L  +  DV+  + EL    L      T  ++   A    ++  H+  + G
Sbjct: 168 --GNIGVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQG 220

Query: 203 IEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           +E+   AK  IF+  E   T  +N YD   F       HA  ++ + +FG  + A F L 
Sbjct: 221 MEDYRQAKLRIFDHAE---TAVVNAYDTQTF-----PDHAAHLQVV-TFGVEQAAQFSLA 271

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +  Q  E  +   +      E+    +G H   N+L  L ++     +   A+ AL    
Sbjct: 272 Q-HQGREYLFARDEAVMACAELSL--VGRHNVANVLTVLALLDSAGVNFRLALDAL---- 324

Query: 322 PKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            K   G  +RC   A N G    +++S   N AS  AA+S L       EG+   ++G +
Sbjct: 325 -KSYTGLTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGV 377

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  + +      LA VL+   +    L  F V      +P      + ++M+ +   I+
Sbjct: 378 GKGADFTP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIR 428

Query: 439 SSLVDGDVVVVKSSNSCGFY 458
             L  GD+V++  S +C  +
Sbjct: 429 PQLKSGDMVLL--SPACASF 446


>gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 486

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 38/337 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140
           IPV    D+LG          L   +T + I G+ GKT+T  M  +A+ +  +  ++A  
Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N          +   +   G  E+ ++   E        +P++AV+T + P HL  F
Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259
              E       +    +   G + +  +D     L  +S   GIKT+ Y    +  A  +
Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263

Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +         +  +E +   + + G+ + V+    G HM  N    L    ++  DVD  
Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323

Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAISVL-SQISPHGE 368
           ++ LS F    G  +R+    A+  G F    I + Y  +P  + A +S   +++   G+
Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           GR I        +   +  F  + AE LSL + + V 
Sbjct: 381 GRVIVAF--QPHLYSRTIEFQKEFAEALSLADAAVVL 415


>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 550

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 127/329 (38%), Gaps = 44/329 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++PV 
Sbjct: 82  VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNVPVI 136

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG+  
Sbjct: 137 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 196

Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                          + I    TLA M    D G+  + M  S +  +      +   IA
Sbjct: 197 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FELLKA 237
           V T +   HL     + +   AKA +F  L       GT     LN DD     FE   A
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H L      +FG   +A    +  +  S  +  ++ + G    V    IG     NML
Sbjct: 314 -AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNML 366

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR 326
                        D  IK+L      +GR
Sbjct: 367 AAFAAAYASGIPEDQIIKSLEKVTGVKGR 395


>gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           kluyveri DSM 555]
 gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016]
 gi|189082874|sp|A5N4L3|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766045|sp|B9DY75|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555]
 gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 458

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 114/289 (39%), Gaps = 27/289 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            F D  Q I+   IG+V  G  N   ID    +  + + F  K P   G +      +K 
Sbjct: 4   NFDDFKQFIKCKKIGVVGIGISNKPLIDFLLKLGARVSAFDKKSPDEIG-EVARELKEKN 62

Query: 65  AGLVV--------VNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLR-SKATIIAI 113
             LV+         + D++    S+ I  P F      GA     +   +R   A I  +
Sbjct: 63  VDLVLGEKYLNDLSDFDIIFKTPSMRIDSPAFVKAKEKGAYITSEMEEFIRYCPAKIYGV 122

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTT    T  + +I K          +IG PL      +  D  +    +  L 
Sbjct: 123 TGSDGKTTT----TTLMYNILKKQGYKSWIGGNIGTPLFSEVEEITPDDRV----VIELS 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             + +T  + P +AVIT ++P HL     +EE   AK  IF+    +  + LN D+    
Sbjct: 175 SFQLMTMNISPEVAVITNVSPNHLDIHKDMEEYIMAKKNIFKYQSNSDLLVLNKDNELTN 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQG 278
            +     ALG    +S  +  N    L K   C +   +    E++L+G
Sbjct: 235 SMTG--EALGKVRQFSIKEKLNKGGYLNKDSLCIDGDEVCKLSEIKLKG 281


>gi|30316070|sp|Q8RDQ1|MURD_FUSNN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 432

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 173/424 (40%), Gaps = 56/424 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H +G +F +    K  G+     D V  +    I +  +D++ 
Sbjct: 32  DKKAMTSEEAL-----NHLEGLEFFI----KSPGIPY--NDFVKEVQKRGIKI--LDEIE 78

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   L++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 79  IAYNYM-IEKGLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKATYAGNIGRSLS 131

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P I++I  I P H+  +   +E  + K 
Sbjct: 132 EVLLKEKDLDFISLELSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNTKF 187

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +   +      N DD   E ++ ++  +  K I S  K K AD  +      +++ +
Sbjct: 188 NITKNQTEDLYFIENIDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVE-----NDKIY 238

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +        ++   GI  H  +N L  +    IL  D +   + L +  P E R + + 
Sbjct: 239 HDKDDIIDVDKLSLKGI--HNLENTLFMVATAEILKLDREKLKEFLMIATPLEHRTELF- 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N G    I++S   N  S K AI              I + G   +  +L+      
Sbjct: 296 --FNYGKLKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP----- 340

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           LAE++   NI  V+L G     +++ L +   V Y +      + I++SL D      K 
Sbjct: 341 LAEMIK-ENIKEVYLIGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMRKRFTKD 396

Query: 452 SNSC 455
           S+  
Sbjct: 397 SDEV 400


>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 550

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 127/329 (38%), Gaps = 44/329 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++PV 
Sbjct: 82  VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNVPVI 136

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG+  
Sbjct: 137 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 196

Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                          + I    TLA M    D G+  + M  S +  +      +   IA
Sbjct: 197 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FELLKA 237
           V T +   HL     + +   AKA +F  L       GT     LN DD     FE   A
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H L      +FG   +A    +  +  S  +  ++ + G    V    IG     NML
Sbjct: 314 -AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNML 366

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR 326
                        D  IK+L      +GR
Sbjct: 367 AAFAAAYASGIPEDQIIKSLEKVTGVKGR 395


>gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 424

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP        DV   I EL    L    + T   +P IAVI  I+  HL     ++   
Sbjct: 115 GVPFIETAGKNDV--AILELSSFQL----YSTKTFKPKIAVILNISKDHLDWHKKMKHYI 168

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WK 264
            +K +IF+   +   + LNYDD+  + +KAKS       IY F  S N   Q +K    K
Sbjct: 169 LSKFKIFKNQTEEDYLILNYDDNCLKQIKAKSQ------IYYF--SLNQLPQDKKGIYLK 220

Query: 265 QCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              +     + LQ K    ++V    +G H  QN++ +L +  +   D+D  +K +  F 
Sbjct: 221 NIEKSGEYILTLQDKEKIDIKVKTSLVGLHNLQNIMASLVVSYLYGLDLDKVLKVIQEFK 280

Query: 322 P 322
           P
Sbjct: 281 P 281


>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
 gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
          Length = 483

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N I  DSR I+  + F AI+G   DGH FI  A+ +GA ++V + ++        I V 
Sbjct: 23  INAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEGAKVIVCSKEVEIHEEITYIKVQ 82

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                L  +     A+ L +  +    +I ITG+ GKTT+  M+   L     +   IG+
Sbjct: 83  NTRKALAIM-----ASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILELAGHSTGLIGT 137

Query: 143 YNNHIG 148
            +N IG
Sbjct: 138 ISNFIG 143


>gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
 gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 154/378 (40%), Gaps = 41/378 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RL+S    IAI G+ GKTTT  ++T  +A   I  T+  IG   N  G    L  
Sbjct: 98  LAELMRLKSG---IAIAGTHGKTTTTSLVTSILAEGGIDPTF-VIGGRLNAAGANARLGS 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL   + P I+V+T I   H+  +    E + SA  +  
Sbjct: 154 -------GDFLVAEADESDASFL--FLSPVISVVTNIDADHMETYGHDFERLKSAFVDFL 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME- 273
             L   G   +  DD+    +  +      K I ++G S   +F        + Q   + 
Sbjct: 205 NRLPFYGVAVVCGDDANIRDILPRVP----KQIITYGLSNECNFHAENIVADNGQMRFDC 260

Query: 274 VQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY- 330
           V++ G +  + +  +  G H   N L  + + + +       +KAL+ F     R +RY 
Sbjct: 261 VRVNGTTSRLSITLNTPGMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYG 320

Query: 331 RCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
             AL   G FTL+D+ Y  +P  M A ++      P   GRR+ +             F 
Sbjct: 321 EVALPAGGSFTLVDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRYTRTRDCFE 376

Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQ 438
            D  +VLS  +   ++ ++ +G   +   D  +L R++ V       + E +  +   I 
Sbjct: 377 -DFVKVLSTVDALCLAEIYAAGEAPIVAADGRSLARALRVSGKVEPVFVEDIAAMPQTIM 435

Query: 439 SSLVDGDVVVVKSSNSCG 456
               DGDVV+   + S G
Sbjct: 436 DVARDGDVVLCMGAGSIG 453


>gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 449

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 20/158 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT   ++       ++T    G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTTVTSLIGDMFDKSRQT----GLLSGNIGYVASKVAQEAKPEDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L  I       RPHIA+IT I  AHL     +EE  +AK  I++   +   
Sbjct: 163 LITELSSFQLLGIE----QYRPHIAIITNIYSAHLDYHGTLEEYRNAKRRIYKNQTEDDF 218

Query: 223 IFLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNAD 257
           +  NY+       + LK+K        +Y F  S+  D
Sbjct: 219 LICNYNQRHLIETDGLKSK--------VYYFSTSQEVD 248


>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADVVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  K +IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKDKIFRG---GGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   S  ++ LQG
Sbjct: 252 ETGRLKQGNEDLISTQDIPLQG 273


>gi|284991684|ref|YP_003410238.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
 gi|284064929|gb|ADB75867.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
          Length = 489

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 33/283 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNN-----HIG 148
             +A+AA +  K ++ A+ G+ GKT+T  MLT+A+ +  +  ++A  G  N      H G
Sbjct: 108 RAVALAAVMAGKRSV-AVAGTHGKTSTTSMLTVAVQACGVDPSFAIGGDLNESGSNAHAG 166

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                       D  + E   S   +  FL  L+ PH A++T +   HL N+  +  + +
Sbjct: 167 ----------GGDVFVAEADES---DRSFL--LLAPHGAIVTNVEADHLDNYGDLAAVEA 211

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A     + L+  G + L  DD     L+       ++T   +G ++++D +L   +   E
Sbjct: 212 AFDRFLQTLDPAGFVVLCADDPGSARLRTVPTPARVRT---YGTAEDSDLRLVDVEVGPE 268

Query: 269 QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +     L G  +  V   + G HMA+N    L     L    +  I  L  F    G  
Sbjct: 269 TTAWTAVLDGDVLGRVPIRVPGEHMARNSAAALLAGLELGLPAEGLISGLGRFG---GVH 325

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +R+      G   + D+ Y  +P  ++A +     ++  G GR
Sbjct: 326 RRFELKGTVGGVRVYDD-YAHHPTEVEAQLRAARAVA--GTGR 365


>gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 493

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 151/372 (40%), Gaps = 34/372 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           ++G+++DSR +     F A+ G    G DFI +A++ GA  ++ + +      A + +  
Sbjct: 23  ISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTDAEGARIAAAELAASQ 82

Query: 83  IPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEML----------TIA 129
             +  V+D       LA+ A L      AT++A+TG+ GKT+    +           + 
Sbjct: 83  AALVVVED---PRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVRQIWTELGHDAVN 139

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLVRPH 185
           L +     A      +    P+TL R   + V  G+    M   SH  E R L  +V   
Sbjct: 140 LGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGLEQRRLDGVVL-K 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T     HL      E   +AKA +F   L   G   +N DD     ++A + A G 
Sbjct: 199 AAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGAEMRAIAAARG- 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + + G+    D  L   +  +    +    +GK+ +     IG   A+N+L+  G+V 
Sbjct: 258 QNVLTVGRGP-CDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAENILLACGLVI 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L       GR +      N G    +D S+  +     A  + L  + 
Sbjct: 317 ASGGAPERVFETLPHLGTVRGRMQLAATRAN-GAAVFVDYSHTPD-----AVATALRALR 370

Query: 365 PHGEGRRIAVLG 376
           PH  GR +A++G
Sbjct: 371 PHVMGRLVAIVG 382


>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
 gi|30316132|sp|Q9KPG5|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
          Length = 440

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG  + A F L     R++    +++ M   E+ L     
Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419


>gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
 gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
          Length = 468

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 154/374 (41%), Gaps = 55/374 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L +     D+ + E  
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTF-VIGGRLNSAGANARLGQG----DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P +A++T I   H+  +   +  + SA  E  + L   G+  L  
Sbjct: 163 ES---DASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCS 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------K 279
           DD+   E++   S     + I ++G   N D Q+R ++     + M   +Q         
Sbjct: 218 DDANVREIMPFVS-----RPITTYG--LNEDAQVRAYEVQPSGTRMRFNVQRTHRDTLLP 270

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-------- 331
            ++V  +  G H  +N L  + + + L    D   ++L+ F   +G G+R+         
Sbjct: 271 PLQVELNLPGLHNVRNALAAIAVATELGVSDDAIRESLAAF---KGVGRRFTQTGEFPVP 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            +   G FT+ID+ Y  +P  M A +S      P    RRI +             F  D
Sbjct: 328 ASHGGGTFTVIDD-YGHHPVEMAATLSAARGAWPD---RRIVLAFQPHRYTRTRDCFE-D 382

Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSS 440
              VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L   +   
Sbjct: 383 FVRVLGTADAVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDF 442

Query: 441 LVDGDVVVVKSSNS 454
           + DGDVV+V  + S
Sbjct: 443 VRDGDVVIVMGAGS 456


>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
          Length = 490

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
 gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
          Length = 490

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
 gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
          Length = 440

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LAR 155
           ++ VA R        A+TG+ GKTT   +L   L+  KK+         +IG PL  LA 
Sbjct: 91  EIEVAYRYAKNFDYAAVTGTDGKTTVTTLLFEMLNRQKKSLVA-----GNIGTPLCELAL 145

Query: 156 MPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
              D ++ +  EL    L  I       RPH++ +T +AP HL     +E    +K  I+
Sbjct: 146 EYTDTNYNVALELSNFQLLGIETF----RPHVSTVTNLAPDHLDYMDSLEAYFESKMRIY 201

Query: 215 EGLEKTGTIFLNYDDS 230
           E          N DD 
Sbjct: 202 ENTNADDYFIRNVDDE 217


>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae MJ-1236]
 gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MJ-1236]
          Length = 467

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 137 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 191

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 192 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +         HA  ++ + +FG  + A F L +  Q  E  +   +      E+    +G
Sbjct: 245 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGREYLFARDEAVMACAEL--SLVG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +   A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 297 RHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +    L
Sbjct: 351 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLATLPVQ---L 397

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 398 CCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 446


>gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 476

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 23/247 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ +S  +     F A+KG  +DGH +I  A++KGA  VV   D+        I VF
Sbjct: 24  VRAVTNNSLKVGEGFIFVAVKGSIFDGHKYIDEAIKKGAKAVVHTEDVEYREDITYIRVF 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L  ++ L +      K ++I +TG+ GKTTT +++   +  +    A IG+   +
Sbjct: 84  DPRQTLAEISNL-ITDFPSEKLSVIGVTGTNGKTTTSKLIAYLIEKVFGPCANIGTDGAN 142

Query: 147 IGVPL--TLARMP------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +G  +  T    P            V+       L  S  G ++     VR  + +   +
Sbjct: 143 VGGEIIETSNTTPDITEINRILEKCVEKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNL 202

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  HL     ++    AK  +FE  E T     N DD +      K       T  SFGK
Sbjct: 203 STEHLDYHKTMDAYFKAKMILFENSEIT---IANIDDPW-----GKKAVELFPTTLSFGK 254

Query: 253 SKNADFQ 259
            + A+ +
Sbjct: 255 DEKANIR 261


>gi|172058258|ref|YP_001814718.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sibiricum
           255-15]
 gi|229620035|sp|B1YKE8|MURC_EXIS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171990779|gb|ACB61701.1| UDP-N-acetylmuramate--alanine ligase [Exiguobacterium sibiricum
           255-15]
          Length = 431

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 118/297 (39%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +A    L + ++   D LG L     A   RS    +AITGS GKT+T  +L+  LS I 
Sbjct: 77  IARAKELDLTIYHYYDFLGHL-----ADEYRS----VAITGSHGKTSTTGLLSHVLSGIT 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTI 192
            T   IG   +  G  +  A+  V      FE          +  H +  +P  A++T I
Sbjct: 128 PTAFLIG---DGTGAGVAEAKAFV------FEA-------CEYKRHFLYYKPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+GI+++ SA  E+   ++    I    DD   + L+A    L     Y FG 
Sbjct: 172 DFDHSDYFTGIDDVVSAFQEM--AMQVKQAIVACGDDEHLQNLQANVPIL----YYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +N DF+        + +  +V L+       +  G G H   N L  + I      + +
Sbjct: 225 -ENNDFRAENATSTPDGTSFDVYLRDDFYGTFLIPGFGRHHVLNALSVIAICQYEGLNKE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                LS F    G  KR     N G   L+D+ Y  +P  + A I    +  P  E
Sbjct: 284 EVAARLSTF----GGVKRRFSETNFGSQILVDD-YAHHPKEISATIESARKKYPDRE 335


>gi|313884894|ref|ZP_07818646.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619585|gb|EFR31022.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 443

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 119/302 (39%), Gaps = 49/302 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +P++     LG L K           T IA++GS GKT+T  +L+  +S I+ T   
Sbjct: 85  ELGLPIYRYHKFLGDLIK---------NYTSIAVSGSHGKTSTTGLLSHVVSHIQPTSYL 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHL 197
           IG                    FG        L    +  H +   P  A+IT +   H 
Sbjct: 136 IGD----------------GTGFGDEAANYFALEACEYRHHFLAYSPDYAIITNVDFDHP 179

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             +  I+ +  A  + F      G I    +D +   L+AK        ++ +G S + +
Sbjct: 180 DFYPSIDAVFDA-MQTFANQTHKGVIACG-EDEYLRKLEAKV------PVHFYGFSHDNE 231

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTA 313
               K ++  E S  +V + G   E  HH      G H   N L  + ++++   D D  
Sbjct: 232 VYADKIERTPEGSQFDVYING---EFYHHFVLPAFGQHNILNALAVITVLNLEGFDKDLV 288

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + ++ F    G  +R+  A      TLID+ Y  +P+ ++A I    Q  PH   R +A
Sbjct: 289 AQHIASF---PGVKRRF-SARKVNNLTLIDD-YAHHPSEIRATIDAAQQKFPH--KRIVA 341

Query: 374 VL 375
           V 
Sbjct: 342 VF 343


>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
          thermopropionicum SI]
 gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
          thermopropionicum SI]
          Length = 496

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 7  FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
          F +LL+A++  + G      V GI+ DSR + P+  F AIKG   DGH++I  A+++GA 
Sbjct: 3  FRELLEAVEADAAGGDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGAL 62

Query: 67 LVVVN 71
           VV+ 
Sbjct: 63 AVVME 67


>gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 526

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 151/385 (39%), Gaps = 50/385 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V  I ++++++     F  + G H  G  F   A    A  V+ + D V  +    
Sbjct: 21  PDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQF---ADSSSAAAVLTDHDGVEKVTRED 77

Query: 83  IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P+  VDDV   L ++  AV        T+I ITG+ GKTTT  M+  AL     +   I
Sbjct: 78  LPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKTTTSYMVEAALLHHGISTGLI 137

Query: 141 GSYNNHIG---VPLTLARMPVDVDFGIFEL----GMSH-----------LGEIRFLTHLV 182
           G+    I    VP TL          +F +    G++H           LG +   TH  
Sbjct: 138 GTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVVMEVSSHAIALGRV-LGTHF- 195

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAK-S 239
              +A  T ++  HL     +E+    KA +F+        T  +  DD++ + L     
Sbjct: 196 --SVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAETSVVCIDDAWGQRLATMLP 253

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGI-GYH 291
           H   + T        +A  Q   W   S  S M+  +Q       G +   +H  + G  
Sbjct: 254 HPFTVST--EAASEHDASLQPDVWAGPS--SVMDNGVQTAELYGFGANEMTLHIPMPGRF 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N ++ +G++       + AI+ LS      GR +R  C   Q F  ++D  Y   P 
Sbjct: 310 NVANAMLAMGLLVKTGMKAEDAIEGLSTV-TVPGRLERIDCG--QDFMAVVD--YAHKPG 364

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           ++ A   VL  +  H  GR   V+G
Sbjct: 365 AIAA---VLDTLRAHVRGRIAIVVG 386


>gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 465

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 150/359 (41%), Gaps = 47/359 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFE 166
           IAITG+ GKTTT  ML++ L        CI      IG  L    + AR+  D ++ + E
Sbjct: 108 IAITGAHGKTTTTSMLSLILEEASADPTCI------IGGELPNFGSNARVG-DSEYVVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
              S    +R+      P IAVIT I   HL +++G  +++  +  +  E ++ +G +F+
Sbjct: 161 ACESDHSFLRY-----SPQIAVITNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFI 215

Query: 226 NYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSME 282
             +  + + LL+  S     K   +FG S++ADF+    K  + + +  +E  L   S +
Sbjct: 216 YSECEYHDYLLEGMS-----KNCKTFGFSQDADFRATDLKLNKGTTEFTIESDL-ADSFK 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L    +   L        +AL  F    G  +R+         T++
Sbjct: 270 VELMVPGEHNILNALAAASVALDLKISPTAIKRALQKF---TGAKRRFMEIGQLQGATIV 326

Query: 343 DESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           D+ Y  +P  +KA +          V++   PH   R    + D     E       D  
Sbjct: 327 DD-YAHHPTEIKATLKTAQEQSDNKVIAIFQPHRFTRTQYFMDDFASSFE-----EADTV 380

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  ++      + G +   LKD +  ++    V+ ++ M+ +   + + +  GD V+ 
Sbjct: 381 ILHKVFAAGEDEIPGANSKNLKDKIKENVPGLEVYVTDDMEDIAEIVSNIVDKGDYVIT 439


>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
          Length = 483

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 28/244 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR++   + F  I+G   DGH ++  AV  GA  V+ + D+        I   
Sbjct: 23  IREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNGAAAVICSKDIENLTECTVIKTE 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
               VL AL           K  +I ITG+ GKTT+  M+   L +       +G+  N+
Sbjct: 83  DTRKVL-ALASANYYDHPSDKLKVIGITGTNGKTTSTFMMKSILEAQGYKVGLLGTIANY 141

Query: 147 IG---VP--------LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHIAV 188
           +G   +P        L L ++  +     V++ I E+    L    +L  +  V+   A+
Sbjct: 142 VGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIMEVSSHSL----YLDRVYGVKFCQAI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E   +AK  +F+    T +  +N DD + E +   S   G KT Y
Sbjct: 198 FTNLTRDHLDFHKTFENYYNAKLILFKN---TLSSVVNIDDEYGERVYEDSE--GKKTSY 252

Query: 249 SFGK 252
           +  K
Sbjct: 253 AIDK 256


>gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 471

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 141/370 (38%), Gaps = 39/370 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+  DSR I     F AI G   DGH  I  +++ GA  ++  T  V       +   
Sbjct: 12  LSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQTLPVTL--RPDVTYI 69

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL ++          K  +I +TG+ GKTT   +L      +      I +  
Sbjct: 70  CVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLGYKVGLISTIC 129

Query: 145 NHIG---VPLT------------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N I    VP T            L +M  +  D+   E+    + + R      +    +
Sbjct: 130 NCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIAGLQFKG--GI 187

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGIKT 246
            T +   HL      +     K   F+ L        N DD    F L   K+H    K 
Sbjct: 188 FTNLTRDHLDYHKTFDIYRDVKKTFFDLLPTGAFALANKDDKNGAFMLQNTKAH----KK 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            YS      ADF+ R  +     + M +  +  S  +V    G   A N+L   G   +L
Sbjct: 244 FYSL--QSLADFKSRILESHFNGTLMTINDKELSTLLV----GKFNAYNLLAIYGTAILL 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + D  +  LSV  P  GR +    +  +GF  ++D  Y   P ++   ++ +++I   
Sbjct: 298 GQNSDEILVLLSVLRPVIGRFETLNAS--RGFTVIVD--YAHTPDALINVLNTINEILAR 353

Query: 367 GEGRRIAVLG 376
            +G+ I V+G
Sbjct: 354 -KGKIITVIG 362


>gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis 053442]
 gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 053442]
          Length = 445

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  K +IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEYEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              + KQ +E   +  ++ LQ           G H A N++  + +   +    +  ++ 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  F   +G   R      +     ID+S   N  +  AAI+ L  
Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343


>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
 gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
          Length = 490

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
 gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
          Length = 490

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 488

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 116/272 (42%), Gaps = 38/272 (13%)

Query: 19  IGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           +GI   G +N   +++DSR+      F AIKG   DG  +I  A++ GA  V+   D   
Sbjct: 8   LGIDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQ 67

Query: 77  SIGSL----SIPVFGVDDVLGALNKLA-VAARLRSK-ATIIAITGSVGKTTTKEMLTIAL 130
               +     IP+     +   L++LA V  +  SK  T++ +TG+ GKTTT ++L    
Sbjct: 68  QHLQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWT 127

Query: 131 SSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGE 174
             +  T A +G+  N +           G  + +     D      DF   E+  SH G 
Sbjct: 128 QLLGHTGAVMGTIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVS-SH-GL 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     V    AV T ++  HL     +E  A+AK  +F  L+    I ++ DD    +
Sbjct: 186 VQHRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQI-IDADDPVGAV 244

Query: 235 LKAK-SHALGIKTIYSFGKSKNADF--QLRKW 263
             A+  HA+ +        S  ADF  Q   W
Sbjct: 245 WLAEMPHAVAV--------SAKADFLPQQANW 268


>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
 gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
          Length = 490

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 5 str. 513]
          Length = 488

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi ATCC BAA-1116]
 gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 47/372 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ + +DSR +     F AI G   DG  FI  A+++GA  V+       + G++ I  
Sbjct: 24  LVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI-- 81

Query: 86  FGVDDV----LGALNKL--AVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137
             VDDV    L AL+K    +A  L +  T  +I +TG+ GKTT  +++   +  +    
Sbjct: 82  --VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKA 139

Query: 138 ACIGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           A +G+  N                + +  TL+ +  +       L +S  G I+     +
Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSL-AEQKAQYTALEVSSHGLIQGRVKAL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAK 238
                V T ++  HL     +EE A+AK  +F    + G   +N DD    ++ + L   
Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLN-N 256

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNM 296
           + A+ +K    F +S  A+           +S + ++  GK  E   H   IG   A N+
Sbjct: 257 ALAVSLKPTTEFSQSVYANH------IAYAESGITIEFDGKFGEGTLHAPLIGEFNAANL 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++    +  L       +       P  GR + ++   N     ++D  Y   P +++ A
Sbjct: 311 MLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQA--NDNAKVVVD--YAHTPDALEKA 366

Query: 357 ISVLSQISPHGE 368
           +  L ++  HGE
Sbjct: 367 LQAL-RVHCHGE 377


>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus CMCP6]
 gi|30316015|sp|Q8DEK8|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           CMCP6]
          Length = 442

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 31/300 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LVV N  +  +   +   +     V+G +   A AA       +IAITGS GK+T  +
Sbjct: 69  ADLVVTNPGIALATPQIQTVLARGVAVVGDIELFAWAA----DKPVIAITGSNGKSTVTD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            LT  +++       IG    +IGVP  L  +  +V+  + EL    L E     HLV  
Sbjct: 125 -LTGVMANACGVKCAIG---GNIGVP-ALDLLEQEVELYVLELSSFQL-ETTSSLHLV-- 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A    ++  H+  + G+++   AK  IF+   K G +  N DD   +     SH    
Sbjct: 177 -AAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH-AKHGVV--NRDDR--QTYPETSHGQQS 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG S + +F +   +    +SW+    Q          +G H   N+L+ L +++
Sbjct: 231 LALVTFG-SDDKEFGVISHQ---GESWLSYNQQPILASRELKLVGQHNVANVLVVLALLT 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLS 361
               D    + AL  +      G  +RC   A N+G    +++S   N AS +AA+S L+
Sbjct: 287 CAGIDYRKGLSALKSY-----TGLTHRCQVVADNRG-IKWVNDSKATNLASTQAALSGLN 340


>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis ATCC 23445]
 gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
 gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
           23445]
 gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
          Length = 488

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|33322727|gb|AAQ07098.1|AF496410_1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl lig [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 109

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + YN+NP ++KA  +   Q+     GRRIAVL DM E+G  S   H  LA  L    
Sbjct: 9   IMSDIYNSNPTAVKAVTAXFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAACLDPDK 68

Query: 401 ISHVWLSGFHVLALKDAL 418
           I+ ++L G  +  L  AL
Sbjct: 69  INVLYLYGPEMNXLYQAL 86


>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella canis ATCC 23365]
 gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 3 str. 686]
 gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
           23365]
          Length = 488

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|167614204|gb|ABZ89707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 439

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 48/346 (13%)

Query: 110 IIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IIAITG+ GK+T   M+T IA +S     A +G    +IG P+ L  +    D  I EL 
Sbjct: 108 IIAITGTNGKSTVATMITKIAQNS--GYNALLGG---NIGCPV-LNLLHQKRDLYIIELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L      T  ++  I+VI  I   H++ +  G E+    K  I+ G E      +N 
Sbjct: 162 SFQLEN----TFNLKSKISVILNIHEDHINRYPQGFEQYKKTKLSIYHGAE---ICIMNS 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   ++   K+     K   SFGK KN+D+ + K    ++ S++   L  K+ ++++  
Sbjct: 215 HDQLNDIFDDKN-----KHYISFGK-KNSDYYIYK----NDTSFI---LCCKNEKILNSS 261

Query: 288 ----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                GYH   N+L+++ I   +       I  L  F        R++   N+     I+
Sbjct: 262 ELLLSGYHNYNNVLVSIAIADAMKFSRQYTIYTLKNF---SSLPHRFQTIQNKNNIDWIN 318

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S + N  S + A++ L++     +G    +LG   + G    +F+I L +  +  NI  
Sbjct: 319 DSKSTNVNSTQVALNSLTK-----KGTIHLLLGGDSKSG----NFNI-LKKYFNKKNIKI 368

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V   K    +SI+V   E +    L I  ++  GD V++
Sbjct: 369 YCFGKDGVKIFKICKKKSIYV---ENLKQAMLLISKTVKSGDTVLL 411


>gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 467

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 119/299 (39%), Gaps = 33/299 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L IPV    ++L  L KL            IA++GS GKTTT  M+   L         
Sbjct: 88  ELGIPVIPRGEMLAELFKLKEG---------IAVSGSHGKTTTTSMVAHILEE------- 131

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
              ++  + +   L R+  +   G  +L +S   E       + P + VIT I   H+  
Sbjct: 132 -AGFDPTVIIGGILQRLGSNAKLGRGDLLVSEADESDGSFLKLSPAVNVITNIDLEHMDY 190

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +  +E+I +A A+    +   G    N DD    +  A S     K + +FG  K AD  
Sbjct: 191 YRDLEDIVAAFAKFAGSVPFYGFCVANADDP--NVRNATSSV--TKKLITFGIEKEADVV 246

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             +      +    V  +G+ +  +   I G H   N L    +   L    +    AL 
Sbjct: 247 GTELSIEGGRYAFGVVFKGERLGKIRLSIGGRHNVYNALAATAVSLELGVPFEVVRSALE 306

Query: 319 VFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            FH  E R +       +GFF    I + Y  +P  ++A +S L ++ P   GRR+ ++
Sbjct: 307 GFHNAERRMEL------KGFFGGVPIYDDYGHHPTEIRAVVSALREMYP---GRRLVMV 356


>gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
 gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
          Length = 470

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 21/220 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140
           IPV    D L AL          +    +AI G+ GKTTT  ML ++L+++    +YA  
Sbjct: 94  IPVVHRSDALAAL---------MAGTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  +     P + A        G  E+ ++   E     H   P +AV+  +   H +N+
Sbjct: 145 GDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANY 194

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           + IEEI  +       +   GT+ ++ D      L  +        + ++G +++AD ++
Sbjct: 195 ASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRDRVDLRVLTYGSAEDADVRV 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            K       S + V L GK +       G H A N +  L
Sbjct: 255 HKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAAL 294


>gi|301056196|ref|YP_003794407.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis CI]
 gi|300378365|gb|ADK07269.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama
           I]
 gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama
           I]
 gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS]
          Length = 468

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 75/439 (17%)

Query: 53  GHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GAG +V +T +      V +  +  IPV     +L  L +L        
Sbjct: 56  GHD---RANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G 
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGQGE 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL  L  P +A++T I   H+  +   +  + SA  E  + L   G+ 
Sbjct: 156 YIVVEADESDASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSA 213

Query: 224 FLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            L  DD+   E++   S     + I ++G S +A  Q+      ++ + M   +Q +  +
Sbjct: 214 ILCADDANVREIMPFVS-----RPITTYGLSPDA--QVCAQDVQADGTRMRFTVQRRDRD 266

Query: 283 VVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYR--- 331
           VV   +       G H  +N L  + + + L  D D AI+ AL+ F   +G G+R+    
Sbjct: 267 VVLPALQVELNLPGLHNVRNALAAIAVATELGVD-DAAIREALAAF---KGVGRRFTQWG 322

Query: 332 -----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                 A   G FTL+D+ Y  +P  M A ++      P    RRI +            
Sbjct: 323 DLPVPAAHGGGIFTLVDD-YGHHPVEMAATLAAARGAWPQ---RRIVLAFQPHRYTRTRD 378

Query: 387 SFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFL 435
            F  D   VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L  
Sbjct: 379 CFE-DFVRVLGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQ 437

Query: 436 FIQSSLVDGDVVVVKSSNS 454
            I   + DGDVVVV  + S
Sbjct: 438 AILDFVRDGDVVVVMGAGS 456


>gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 494

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 132/332 (39%), Gaps = 51/332 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H F  + +++G  +VVVN   ++   +  + +P
Sbjct: 23  VDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELEGDVTQVIVP 82

Query: 85  VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                      + L VA+ L          + T   +TG+ GKT+   M+ +    + K+
Sbjct: 83  -----------DTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKS 131

Query: 137 YACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFL 178
            A +G+    I           P T++   ++   VD G   + +   SH   LG +R  
Sbjct: 132 SAYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRG- 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFEL 234
              V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F   
Sbjct: 191 ---VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGY 247

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L      +    ++++G    A F  +   +  +    ++        V    +G     
Sbjct: 248 LA----NVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYHVKSPYVGRFNIS 303

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           N++  +  V    A ++  I A++   P EGR
Sbjct: 304 NIMAAIIAVWSKGATMEEIINAVTSLEPVEGR 335


>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
 gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
          Length = 444

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 114 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 168

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 169 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG  + A F L     R++    +++ M   E+ L     
Sbjct: 222 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 272 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 319

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 320 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 369

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V      +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 370 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 423


>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
          Length = 413

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 42/309 (13%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           + AV K  G+   N  ++       IPV+G         ++ +  R  S  + I++TG+ 
Sbjct: 41  IAAVVKSPGVPPRNP-LLEKAKRAGIPVYG---------EVELGYRF-SSGSFISVTGTN 89

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIR 176
           GK+TT  ++  AL    +     G+Y    G+PL T A    +  F   EL      +I 
Sbjct: 90  GKSTTTAVIYHALKLSGRESFIGGNY----GIPLSTFALDTTEESFTALELSSF---QIE 142

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT   R  ++V   + P HL+ +S  EE   AK  +   L+ +    +N DD  F+ LK
Sbjct: 143 DLTSF-RSRVSVFLNVTPDHLNRYSSFEEYREAKLRL---LDFSDCAVVNGDDPSFKHLK 198

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K   LG   IY+F  S ++    R   +    S   +  +   ++ +H+   Y  A   
Sbjct: 199 GK---LG---IYTFSVSTDSGADARVEGELLVFSGYRIPYRELPLKGIHNLENYLAALVA 252

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMK 354
           L  +G+      ++    KA         +G  +RC +   +G    +++S   NP +MK
Sbjct: 253 LAVVGLSE---EEIYEGFKAF--------KGLPHRCEVVGRKGGVVFVNDSKATNPDAMK 301

Query: 355 AAISVLSQI 363
            A+     +
Sbjct: 302 KALESFRSV 310


>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
 gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
          Length = 488

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|256850823|ref|ZP_05556212.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661034|ref|ZP_05861948.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|282934508|ref|ZP_06339763.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297205696|ref|ZP_06923091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
 gi|256615885|gb|EEU21073.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547971|gb|EEX23947.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|281301455|gb|EFA93744.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297148822|gb|EFH29120.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
          Length = 435

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L+    T   IG             R   D  F ++E  
Sbjct: 106 TSIGISGAHGKTSTTALLSHVLTEAAPTSYLIGDGE---------GRGVKDSRFFVYE-- 154

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F  I +  SA     +  +K   +F+ 
Sbjct: 155 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKK--ALFVW 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + ++ K         Y++G   + DFQ    K+ ++ +   V+  GK + E   
Sbjct: 208 GDDPRLQKIETKIPK------YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKT 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N L  +G+       ++   K L  +    G  KR     + G  T+ID+ 
Sbjct: 262 HLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTY----GGAKRRFSEKDFGDITVIDD- 316

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  MKA I    Q  P
Sbjct: 317 YAHHPTEMKATIQAAKQKFP 336


>gi|30264759|ref|NP_847136.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47530235|ref|YP_021584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187576|ref|YP_030829.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|52140819|ref|YP_086015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|65322056|ref|ZP_00395015.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bacillus anthracis
           str. A2012]
 gi|118479825|ref|YP_896976.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|165869729|ref|ZP_02214387.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167634042|ref|ZP_02392365.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|167637992|ref|ZP_02396270.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|170685837|ref|ZP_02877060.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|170705461|ref|ZP_02895925.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|177651186|ref|ZP_02934017.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190568261|ref|ZP_03021169.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032962|ref|ZP_03100375.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196040822|ref|ZP_03108120.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196043730|ref|ZP_03110967.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|218905917|ref|YP_002453751.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225866676|ref|YP_002752054.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB102]
 gi|227817477|ref|YP_002817486.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228917339|ref|ZP_04080893.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929741|ref|ZP_04092758.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948436|ref|ZP_04110719.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093789|ref|ZP_04224888.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|229124255|ref|ZP_04253447.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|229186944|ref|ZP_04314098.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|229602579|ref|YP_002868966.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|254687497|ref|ZP_05151353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725061|ref|ZP_05186844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           A1055]
 gi|254736798|ref|ZP_05194504.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741835|ref|ZP_05199522.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Kruger B]
 gi|254754567|ref|ZP_05206602.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Vollum]
 gi|254757399|ref|ZP_05209426.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Australia 94]
 gi|300118871|ref|ZP_07056584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
 gi|33301353|sp|Q81KQ2|MURC_BACAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798169|sp|Q633A2|MURC_BACCZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222955|sp|A0RJS6|MURC_BACAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711858|sp|B7JS63|MURC_BACC0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763737|sp|C3PBF0|MURC_BACAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763738|sp|C3L9Z3|MURC_BACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763739|sp|C1EV43|MURC_BACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30259434|gb|AAP28622.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47505383|gb|AAT34059.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181503|gb|AAT56879.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|51974288|gb|AAU15838.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|118419050|gb|ABK87469.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|164714558|gb|EDR20077.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167513809|gb|EDR89177.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|167530843|gb|EDR93545.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|170129586|gb|EDS98449.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|170670301|gb|EDT21041.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|172083012|gb|EDT68074.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190560517|gb|EDV14494.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994391|gb|EDX58346.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196025066|gb|EDX63736.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|196028276|gb|EDX66885.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|218539138|gb|ACK91536.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225790517|gb|ACO30734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 03BB102]
 gi|227004616|gb|ACP14359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228596498|gb|EEK54164.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228659557|gb|EEL15205.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|228689674|gb|EEL43482.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|228811423|gb|EEM57761.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829920|gb|EEM75540.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842329|gb|EEM87423.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229266987|gb|ACQ48624.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|298723716|gb|EFI64445.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
 gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
          Length = 450

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAQ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D     + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQIIKEILSAF 307


>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
 gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
          Length = 445

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 450

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      E   +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQNNMAAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTKEKVDGAYLENGQLYFRG--EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D     + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQIIKETLSAF 307


>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
 gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
          Length = 499

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 33  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 91  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 378 TTGRVIVVFG 387


>gi|42783876|ref|NP_981123.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10987]
 gi|49481451|ref|YP_038734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206978123|ref|ZP_03239006.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217962174|ref|YP_002340744.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH187]
 gi|228987941|ref|ZP_04148048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141422|ref|ZP_04269960.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229158298|ref|ZP_04286365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|229198852|ref|ZP_04325544.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|48428295|sp|P61675|MURC_BACC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798279|sp|Q6HCJ2|MURC_BACHK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711861|sp|B7HSM3|MURC_BACC7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42739806|gb|AAS43731.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 10987]
 gi|49333007|gb|AAT63653.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206743659|gb|EDZ55083.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217066938|gb|ACJ81188.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH187]
 gi|228584626|gb|EEK42752.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|228625256|gb|EEK82016.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228642203|gb|EEK98496.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228771806|gb|EEM20265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|324328581|gb|ADY23841.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 489

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 152/380 (40%), Gaps = 56/380 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           ++GI+ DSR + P + F  I G   DGH F   A++ GA  V+     D       L+ P
Sbjct: 23  ISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGAVAVLAERQLDTGGKATLLTTP 82

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D   AL  LA     R      ++A+TG+ GKTTT +++   L    K  A +G+
Sbjct: 83  -----DTRSALALLAANYYGRPSKSIRVVAVTGTNGKTTTTDLIKAILEEAGKKTAIMGT 137

Query: 143 YNNHIG---------VP--------LTLARMPVDVDFGIFE-----LGMSHLGEIRFLTH 180
               +G          P        + L R     D+ + E     L +  + EI F   
Sbjct: 138 LYAQVGEIQREMQHTTPEALEIESFMALCREE-KADYIVMEVSSHALQLQRVAEIDF--- 193

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAK 238
               ++AV T +   HL     ++   +AK ++F+ +  EK     +N DD + E +   
Sbjct: 194 ----NVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYAIINIDDPWAEEI--- 246

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A  I    S+G  K +D+Q  + K   + S   +     S+ +    IG     N L 
Sbjct: 247 FQAATIPC-RSYGIKKRSDYQAGELKIDLDGSSFRLHYGDNSLMINMKLIGLFSIYNALA 305

Query: 299 TLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     L   +D  +   AL+      GR ++  C   Q F  ++D  Y   P  ++  
Sbjct: 306 AISFA--LQEGIDPGLIQSALARVEGVPGRFEKVDCG--QDFAVIVD--YAHTPDGLE-- 357

Query: 357 ISVLSQISPHGEGRRIAVLG 376
            ++L      G+ R I V G
Sbjct: 358 -NILQTSRELGKKRLICVFG 376


>gi|116512986|ref|YP_811893.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123320128|sp|Q02W92|MURC_LACLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116108640|gb|ABJ73780.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 443

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  ML   +S+I  T   IG             R     ++ +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGNAGSEYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P   ++T I   H   F GIE++ SA  +    ++K   IF   +
Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L AK+       IY +G   N D++     + +  S  +   +G+ +   V   
Sbjct: 208 DVNLRKLSAKA------PIYYYGFEANDDYRAENLIRNTRGSSFDAYFRGEKIGHFVVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D+      L  F     RG + R    +   T+I + + 
Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTDVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381
            +P  ++A +    Q            PH   R IA   +  E+
Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360


>gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 495

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 147/379 (38%), Gaps = 50/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+ +DSR +AP +AF AI G    G  F+  A   GAG V+       +   + +P  
Sbjct: 22  VCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEP---PAPNGMPVPAD 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  A++ +      +G
Sbjct: 79  AI-AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPTGTLG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 138 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237
             +AV T +   HL     + +  +AKA++F   GL+      +N DD+F    F  L  
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDAFGRTLFASLDP 250

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A+G+    S     +A    +  +         + +QG+   V    +G     N+L
Sbjct: 251 ALRAIGV----SSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLL 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G +  L          L    P  GR  R   A       L+   Y   P +++ A+
Sbjct: 307 AVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 363

Query: 358 SVLSQISPHGEGRRIAVLG 376
           S L     H + R I V G
Sbjct: 364 SSLRS---HAQDRLICVFG 379


>gi|224372973|ref|YP_002607345.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
 gi|223589775|gb|ACM93511.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
          Length = 470

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           KLA     +    I+AIT S GKT+ K  L   L    K Y    S N   G+   +   
Sbjct: 141 KLAKEKLTKIDPKIVAITASYGKTSIKNFLYQLLEGTFKVYKTPRSVNTLKGIIKDINVD 200

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP +++  I E G    G+I  +   +    +++  I P H+  F  ++ I   K EIF+
Sbjct: 201 MPENIEIYIAEAGAREKGDILEIVEFLENEYSILGKIGPQHIEYFKTLDNIKQTKLEIFK 260


>gi|228935998|ref|ZP_04098808.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823766|gb|EEM69588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|297191289|ref|ZP_06908687.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718424|gb|EDY62332.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 464

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 23/202 (11%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYA 138
           LS+PV    D L +L        LRS    IA+ G+ GKTTT  ML +AL+ +    +YA
Sbjct: 92  LSVPVVHRSDALASLMT-----GLRS----IAVAGTHGKTTTTSMLAVALTELGLDPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G  +     P T AR   D D  + E   S     ++      P +A++  +   H +
Sbjct: 143 IGGDLDG----PGTNARHG-DGDIFVAEADESDRSFQKY-----DPEVAIVLNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           N++ ++EI  +  E F G +   GT+ ++ D +    L AK        I ++G+S+ AD
Sbjct: 193 NYASMDEIYESF-ETFAGKIVPGGTLVISADQAGAVELTAKVRDRSSVKIVTYGESEAAD 251

Query: 258 FQLRKWKQCSEQSWMEVQLQGK 279
            ++ K       S + V L G+
Sbjct: 252 VRVHKITPRGLTSEVTVLLDGR 273


>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           typhi str. Wilmington]
 gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
          Length = 457

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  +++  L+S    Y   G    +IGVP   A+   D    + EL   
Sbjct: 107 IAITGTNGKSTTAALISHILNSNGLDYTVAG----NIGVPALQAKASKDG--YVLELSSF 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  ++  T      +AV+  I P HL  +  +    +AKA+IF+ ++K     +N D+ 
Sbjct: 161 QLDLVKIFT----VKVAVLLNITPDHLDRYQDMNGYIAAKAKIFDRMDKDSYAVINIDND 216

Query: 231 F 231
           +
Sbjct: 217 Y 217


>gi|317483069|ref|ZP_07942070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516664|emb|CBK70280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum F8]
 gi|316915475|gb|EFV36896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 481

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 32/276 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  + A  I ITG+ GKT+T EM +  L++        G+  +   + ++L+R   +   
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASG-DMSMSLSRCATNPQH 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  + +S   ++ F   L     A IT IA  HL    G E  A+ K+++F    K   
Sbjct: 155 DVLCVELSSF-QLHFTDSLAL-DCAAITNIADDHLDWHGGRENYAADKSKVFHNA-KRAI 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           ++   D    EL  A   A G + + ++    +     +       E  W+ V   G + 
Sbjct: 212 VYNAQDAKVSELAAAAQTAEGCRKVGFTLEAPQAGQIGI-------EDGWI-VDRSGVAG 263

Query: 282 EVVHHGIGY------------------HMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             V   +                    H+  + L  L +V  L AD DTA+KAL+ F P 
Sbjct: 264 GAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPG 323

Query: 324 EGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS 358
             R +     A+  G    +D+S   N  + +A++S
Sbjct: 324 GHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLS 359


>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
 gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A I  +TGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 ANIFGVTGSDGKTTTTTLVYEMLK--KEGYKTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+  E    + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVEAKKNIFKYQENNDLLV 225

Query: 225 LNYDDSFFELLKAKSHALG 243
           LN DD      + +  ALG
Sbjct: 226 LNKDDELTN--RMEKEALG 242


>gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum SS9]
 gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Photobacterium profundum SS9]
          Length = 506

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 102/245 (41%), Gaps = 30/245 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++IDSR I   + F A+ G   DG  FI  A+  GA  V+   D +A  G +     
Sbjct: 32  VVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNIAKHGDIVEQDG 91

Query: 87  GVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V      LN+   A+A R      ++  ++A+TG+ GKTT  ++L    + I      +
Sbjct: 92  IVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQWANLIGYNAGVM 151

Query: 141 GSYNNHIGVPLTLA--------RMP------VD--VDFGIFELGMSHL--GEIRFLTHLV 182
           G+  N +   LT A         +P      VD   DF   E+    L  G ++ L  + 
Sbjct: 152 GTTGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLVQGRVKALQFVA 211

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHA 241
               ++ T ++  HL     +   A AK  +F    + G   +N DD   F  L    HA
Sbjct: 212 ----SIFTNLSRDHLDYHGDMANYADAKKCLFTE-HQAGIPVINADDDIGFTWLADLPHA 266

Query: 242 LGIKT 246
           + + T
Sbjct: 267 VAVVT 271


>gi|257459539|ref|ZP_05624648.1| Mur ligase middle domain protein [Campylobacter gracilis RM3268]
 gi|257442964|gb|EEV18098.1| Mur ligase middle domain protein [Campylobacter gracilis RM3268]
          Length = 592

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167
           TII IT S GKT+ K  L   L S  + Y    S N   G+   +   +P D    I E 
Sbjct: 174 TIIQITASYGKTSIKNFLYQILKSDFRCYKTPRSVNTLAGLVRDVNEALPTDTQIYIAEA 233

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           G    G+I  +T  + P I V+  I   H+  F  IE I   K E
Sbjct: 234 GARLSGDIAEITEFLAPQIVVVGEIGAQHIEYFKSIENIRKTKLE 278


>gi|167912655|ref|ZP_02499746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 158

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 317 LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAV 374
           L  F P +GR +  R A       T+ID++YNANP SM AAI VL +Q +P     R+ V
Sbjct: 2   LEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMLAAIDVLAAQSAP-----RVLV 56

Query: 375 LGDMCEMGELSQSFHIDL 392
           +G+M E+G+   +FH ++
Sbjct: 57  IGEMGEVGDEGPAFHREI 74


>gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
 gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 463

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 156/379 (41%), Gaps = 45/379 (11%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT  ++   L  + +  TY         IG  LT A 
Sbjct: 98  LAELMRLRQG---IAIAGTHGKTTTTSLVASILGEAGMDPTYV--------IGGKLTAAG 146

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
               +  G F +  +   +  FL   + P IA++T I   H+  +    + + +A  +  
Sbjct: 147 TNARLGQGDFLVAEADESDASFL--YLTPVIAIVTNIDADHMDTYGHDFDRLKTAFVDFC 204

Query: 215 EGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + L   G   L  DD+   E+L   +  +   T Y F  +     Q+R      E   M 
Sbjct: 205 QRLPFYGMAVLCIDDANVREILPRITKPI---TTYGFDPAA----QVRAVDTRFEHGQMR 257

Query: 274 VQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++ + M   +V  +  G H   N L  + + + + A     +KAL+ FH    R +RY
Sbjct: 258 FTVKREGMADLDVTLNQPGLHNVLNALAAIAVATEVGASDAAIVKALAEFHGVGRRFQRY 317

Query: 331 --RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 + G + LID+ Y  +P  M A ++      P   GRR+ ++            F
Sbjct: 318 GEHPTKDGGCYWLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLVFQPHRYSRTRDCF 373

Query: 389 HIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFI 437
             D  +VLS  +   ++ V+ +G   +   D  AL R++ V       + E +  +   +
Sbjct: 374 E-DFVKVLSETDALVLTEVYPAGEAPIVAADGRALARAVRVAGKVEPVFVENVADVAATV 432

Query: 438 QSSLVDGDVVVVKSSNSCG 456
           +  +   DVV+V  + S G
Sbjct: 433 RDLVQADDVVLVMGAGSIG 451


>gi|15615810|ref|NP_244114.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus halodurans C-125]
 gi|20139205|sp|Q9K7W1|MURC_BACHD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|10175871|dbj|BAB06967.1| UDP-N-acetylmuramate-alanine ligase [Bacillus halodurans C-125]
          Length = 433

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 133/346 (38%), Gaps = 65/346 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T IA+TGS GKT+T  +L+  L S   T   IG             +   D  + +F
Sbjct: 99  QRFTSIAVTGSHGKTSTTGLLSHVLGSHCPTSFLIGD---------GTGKGAADSHYFVF 149

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E          +  H +  RP   ++T I   H   F  I ++ SA  E+   ++    I
Sbjct: 150 EA-------CEYRRHFLNYRPDYCIMTNIDFDHPDYFDDINDVFSAFQEM--AMQVKKAI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD   + + A      +  +Y +G +++ DFQ R  +  SE +  +V ++      
Sbjct: 201 VACGDDEQLQGIHAN-----VPVVY-YGFNEDNDFQARNIEVTSEGTHFQVFVRNN---- 250

Query: 284 VHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            H+G       G H   N L  + +       V+   + L  F   EG  +R+      G
Sbjct: 251 -HYGDFTIPRFGKHNVLNSLAVIALCHYENIPVEVLARELKTF---EGVKRRF-TEKTLG 305

Query: 338 FFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQS 387
              LID+ Y  +P  + A I    Q            PH   R  A L +  E   L Q+
Sbjct: 306 GQILIDD-YAHHPTEISATIEAAKQKYPDRPVVAIFQPHTFSRTKAFLHEFAEA--LKQA 362

Query: 388 FHIDLAEV----------LSLYNISHVWLSGFHVLALKDALPRSIH 423
            H+ L ++          LS+ ++    + G H+L+  D  P   H
Sbjct: 363 DHVYLCDIFGSARENKGSLSIEDLQ-ALIPGAHLLSENDLAPLQDH 407


>gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
 gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
          Length = 489

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 147/381 (38%), Gaps = 43/381 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+  +  + +D+R + P   F A+KG   DG  F+  A QKGA  ++ +         L
Sbjct: 16  APEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAILFDNSDGFVPSEL 75

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML------------- 126
           SIP   V  +   +++LA         K  ++ +TG+ GK+T  +++             
Sbjct: 76  SIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQLIANWTELFGQRGGV 135

Query: 127 --TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
             T+      + +A   +  + I +   LAR   + VD    E+  SH G ++     ++
Sbjct: 136 LGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVS-SH-GLVQHRVSALQ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-----FFELLKAK 238
              AV T ++  HL     ++  A AK  IF+       I LN DD+       ++ +A 
Sbjct: 194 FAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPECCI-LNADDATAREWLLQMPQAV 252

Query: 239 SHALGIKTIYSFGK---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            + +  +     G    + +  +  +        SW +  L    +       G     N
Sbjct: 253 VYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLL-------GKFNVSN 305

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  L ++ +L  D +T  +  S   P  G   R  C  NQ    L+   Y   P  ++ 
Sbjct: 306 LLAALAVMLVLQYDFETLCQTASRLQPVTG---RMECFGNQD-QPLVVVDYAHTPDGLEK 361

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A+    Q   H  G    + G
Sbjct: 362 ALQAARQ---HCHGHLFCLFG 379


>gi|222098159|ref|YP_002532216.1| udp-N-acetylmuramate--l-alanine ligase [Bacillus cereus Q1]
 gi|254765803|sp|B9J189|MURC_BACCQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221242217|gb|ACM14927.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Q1]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ SA  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 132/320 (41%), Gaps = 35/320 (10%)

Query: 63  KGAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T    D V  I +  L IP          L++  + A L +    IA+ GS
Sbjct: 70  RGADAIVVSTAIPYDNVEVIAAWDLRIP---------KLHRSDINAALVNAYDGIAVAGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ + L        C G  +  I V   +  +  +   G     +S   E  
Sbjct: 121 HGKTTTTSMIGVTLD-------CAG-VSPTIIVGGEVPDLGTNAKLGTGRYLVSEADESD 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +RPHIAV+T +   H+ ++  +E+I  A     +  +  GT  L +++     + 
Sbjct: 173 GSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFVDQTDADGTAVLCFENEILRQIA 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            ++       + S+     AD++    +   S  S+   +   +   V+ +  G H   N
Sbjct: 233 CETPC----RVVSYAIDAEADYRAADMETHGSVISFTAFERGAEMGRVLLNIPGRHNVLN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  +   +     +AL+ FH   G  +R++    +    ++D+ Y  +P  + A
Sbjct: 289 ALACIAVARLAGVEFPEIRRALAQFH---GAKRRFQTKGKERGVWVVDD-YAHHPTEIAA 344

Query: 356 AISVLSQISPHGEGRRIAVL 375
            ++   Q +P   GR I V 
Sbjct: 345 TLAAARQTNP---GRLICVF 361


>gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
 gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
          Length = 468

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 171/412 (41%), Gaps = 42/412 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++ DSR +   +AF AI+G   DG+ +I  AV++GA +V    +    I    + V 
Sbjct: 7   ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTERE----IDHREVQVV 62

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VD+    L +LA  V         ++ +TG+ GKTTT  ++    S    T   IG+  
Sbjct: 63  KVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLIGTVK 122

Query: 145 NHIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +G  +  A +               VD +  I  + +S  G        +   I V T
Sbjct: 123 IKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDIVVYT 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E+  + K E+F+   +  T  +N DD + + + +   A     + ++
Sbjct: 183 NLTKDHLDLHEDFEDYLATKKELFKQAGEESTALINLDDEYADRIMSGLSA----EVITY 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           G S  AD Q+ +    +  S   ++      +  E+  + +G H   N L    +  I  
Sbjct: 239 GFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLIYG 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V+     L  F+P   R +     +    FT+ID+  + NP + +A    + ++    
Sbjct: 299 LSVEEIKAQLKEFNPFFRRLE----VIYDDKFTIIDDCAH-NPGNYRAVFETIKELDYD- 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----NISHVWLSGFHVLALK 415
              R+ ++  +   G    +   + AE++S Y    N+S ++++    LA K
Sbjct: 353 ---RLYIINAI--RGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANK 399


>gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
 gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
          Length = 533

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 151/368 (41%), Gaps = 54/368 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83
           + GI++ ++ + P + F A+ G    G  +   A+++GA  V+ +    +++A     S+
Sbjct: 22  LTGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAAVLTDRAGAELLAGTDLGSV 81

Query: 84  PVFGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +  V+   + LGA+ +       R  A ++ +TG+ GKTTT  +L  AL++     A I
Sbjct: 82  ALLVVERPREHLGAIARQLYGDPSRRLA-VVGVTGTSGKTTTCYLLEAALAADGSRSAVI 140

Query: 141 GSYNNHIG------------VPLTLARMPVDVDFGIFELGM---SH---LGEI---RFLT 179
           G+    I              P   A + V V+ G+  + M   SH   LG +   RF  
Sbjct: 141 GTVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFA- 199

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
                 +   T ++  HL     +E+   AKA +F+G  + G   ++ D  +   L A+ 
Sbjct: 200 ------VGAFTNLSQDHLDFHHDMEDYFRAKAMLFDG--RAGAHVIDVDTEYGARLAAEH 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQN 295
             AL +       +   AD+ + +    +      V L G     V   +   G     N
Sbjct: 252 PEALTVSD-----RPGAADWSV-EMVTLAANGVQHVVLSGPGKRQVTLDLAIPGAFNVGN 305

Query: 296 MLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
             + L  V  L  DV  A  AL +V  P    G+  R    Q F  ++D  Y   P ++ 
Sbjct: 306 AAVALACVDALGRDVQQAADALATVVVP----GRMERVDAGQDFLAVVD--YAHKPGAVA 359

Query: 355 AAISVLSQ 362
           A +  + Q
Sbjct: 360 AVLDAIGQ 367


>gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis OX99.30304]
          Length = 445

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNVDDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATKDIPLQG 273


>gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 494

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 39/326 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           V  I+ DSR+ +    F A KG   D H F  + V +GA ++VVN   D+   +  + +P
Sbjct: 23  VTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQGAKVIVVNHQQDINGDVTQVIVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      + T I +TG+ GKT+   M+ +    + K  A +G+
Sbjct: 83  -----DTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSIATMIHLIYRGLGKGSAYLGT 137

Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMS----HLGEIRFLTHLVRP 184
               I           P T++     +  VD +     + +S     LG +R     V  
Sbjct: 138 NGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTMEVSSHGLSLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K     LN DD F + L     
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAVLNNDDDFSKYLA---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++    I+++G   +A F  +  ++  +    +      +  V    +G     N++  +
Sbjct: 250 SVTPYEIFTYGIDHDAQFMAKNIQESLQGVHFDFDTPIGTYSVKTPYVGKFNISNIMAAM 309

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326
             V      ++  ++ +    P EGR
Sbjct: 310 IAVWSKGTSMEDIVRVVENLEPVEGR 335


>gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 431

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 19/226 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++ P + + A+ G  + G DF   A   GA  V+ +        +  +PV 
Sbjct: 49  ITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAAVLTDESGAERAAATGLPVL 108

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             ++  G + +LA          +  I ITG+ GKTTT  ++   L +  ++   IG+  
Sbjct: 109 VTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTTTAYLVEGGLKAAGRSTGLIGTVE 168

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G    +   V  H             IAV 
Sbjct: 169 MRIGDERIKSERTTPEATDLQALFAVMRERG-ADAVAMEVSSHALVLGRVDGCVFDIAVF 227

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             ++P H+   S +E+   AKA++F    ++    +N+DD +   L
Sbjct: 228 NNLSPEHMEFHSDMEDYFQAKAQLFT-PRRSREAVVNFDDEYGRRL 272


>gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
 gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
          Length = 509

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84
           + G+S+DSRSIA  E F A+KG   DG  FI  A+ +GA  VV +        S+   IP
Sbjct: 33  ITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDFDFSSVPNDIP 92

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  V ++   L+ +A            +I +TG+ GKTT  ++L    + + +  A IG+
Sbjct: 93  LVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAASIGT 152


>gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha710]
          Length = 445

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNVDDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATKDIPLQG 273


>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae OXC141]
          Length = 446

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 23/220 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P + +A+   D 
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+       E  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++      L +K+ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQD----LTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 267

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D  T  + LS F
Sbjct: 268 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 303


>gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
          Length = 300

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 48/284 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84
           ++ I+ DSR+      F A  G   D H F      +G  LVVVN +  + A++  + +P
Sbjct: 23  IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLSANVTQVVVP 82

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                D L   + LA  +      +     +TG+ GKT+   M+ +    ++K  A +G+
Sbjct: 83  -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137

Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184
               I           P T++   ++   VD G   + +   SH   LG +R     V  
Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240
            +A+ + +   HL     +E    AK+ +F    E L K   + LN DDSF E L+    
Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +    ++S+G  + A F     ++          LQG S + V
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFV 284


>gi|229032342|ref|ZP_04188315.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
 gi|228729122|gb|EEL80125.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   FS I ++ +A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFSDINDVFNAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
 gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
          Length = 481

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 152/367 (41%), Gaps = 43/367 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   L  + +  T+  IG   N  G    L           + + 
Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLDPTF-VIGGKLNSAGTNAQLG-------GSRYLVA 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P I+V+T I   H+  + G IE +     +    L   G   +  
Sbjct: 174 EADESDASFL-HLT-PVISVVTNIEADHMDTYGGDIERLKQTFVDFLHNLPFYGVAVMCV 231

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEV 283
           DD F  E++   S A     I ++G  + +AD++    +    ++   V+  G    ++V
Sbjct: 232 DDGFVQEIIPRISRA-----IITYGIDNPDADYRAENIESDGLRTRFVVRRPGGRSDLDV 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339
                G H  QN L  + + +    D     + L+ F    G G+R++     +  +G  
Sbjct: 287 ELKMPGRHNVQNALAAIAVATDEGVDDAAICRGLAGF---AGVGRRFQVYGDYSTRKGTV 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEV- 395
           TLID+ Y  +P  ++A I       P    RR+ +L          +L + F   L+EV 
Sbjct: 344 TLIDD-YGHHPTEVEAVIRAARDAWPD---RRLVMLYQPHRYTRTRDLYEDFVRVLSEVD 399

Query: 396 ----LSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               + +Y+     + G    AL  +L +  S+   + E    +   + ++L DGD+++ 
Sbjct: 400 GLLLMDVYSAGEPAIPGADGRALCRSLRQRGSVEPLFVEENGEIEALLANTLQDGDLLIT 459

Query: 450 KSSNSCG 456
           + +   G
Sbjct: 460 QGAGDIG 466


>gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
          Length = 492

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 140/373 (37%), Gaps = 37/373 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83
           +  I  DSR +     FF I+G   DGH ++  A+ +GA  +V +  +      I  + +
Sbjct: 16  IESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLRRYYQGIVYVQV 75

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P     DVL  LN++A         K T I +TG+ GKT    ++   L    K    +G
Sbjct: 76  P-----DVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARVVARLLGRYLKM-GYVG 129

Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             NN I    T+ +M                 V  +   F L +S  G        V   
Sbjct: 130 --NNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRVDSVNFS 187

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGI 244
           I V T     H+     I+ +  +  ++F  L++ G   LN D+  F   L      L  
Sbjct: 188 IVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRFNHFLSMNYKDLSE 247

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I S+G    AD   R  +   + S  ++ ++ +   V    I      N L  L  +
Sbjct: 248 HAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNTLAILTTL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +  + A+    P EGR +     + Q F  ++D  Y  +  + +     +  +
Sbjct: 308 YALEMTPEEIVNAIKYIQPVEGRME--VVPVKQPFHIIVD--YCQHAHNFEEVFKFVYGV 363

Query: 364 SPHGEGRRIAVLG 376
              G G  IAV G
Sbjct: 364 K--GNGHLIAVFG 374


>gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 31/265 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G+S DSR+    + +FA+ G H DGH F+  A+  GA  V+    +  S+    I  
Sbjct: 24  LISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGARAVIHQVPL--SLYHPEIAY 81

Query: 86  FGVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYA 138
             V +   +++ +A A     +R+     +I +TG+ GK++T   L   L+   +K  + 
Sbjct: 82  LQVTNSRISMSPVAAAFYDHPSRV---LKVIGVTGTDGKSSTVSFLHQLLTGMGLKCGFL 138

Query: 139 CIGSYN-------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------ 185
               +N       NH       A         + E G SH   I   +H + P       
Sbjct: 139 STVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAGCSH-AVIESTSHGLSPKNNRLGD 197

Query: 186 ----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSH 240
                AVIT I+  HL     +E+    KA +F    +  G   +N DD    L    + 
Sbjct: 198 ICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIAVINIDDKNHNLFAGTAS 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ 265
                + YS   ++ AD++ R  ++
Sbjct: 258 GCRSISFYSATGAQKADYRARGIEE 282


>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
 gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
          Length = 493

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 128/333 (38%), Gaps = 52/333 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++PV 
Sbjct: 25  VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNVPVI 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG+  
Sbjct: 80  YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 139

Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVR 183
                          + I    TLA M    D G+  + M        LG +  + +   
Sbjct: 140 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDY--- 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FE 233
             IAV T +   HL     + +   AKA +F  L       GT     LN DD     FE
Sbjct: 194 -DIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFE 252

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              A +H L      +FG   +A    +  +  S  +  ++ + G    V    IG    
Sbjct: 253 QYTA-AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNV 305

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            NML             D  IK+L      +GR
Sbjct: 306 YNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGR 338


>gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
 gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
          Length = 501

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 155/404 (38%), Gaps = 61/404 (15%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           HD +Q ++    G         +  DSR +AP + F A  G   DG   +  A+ +GA  
Sbjct: 9   HDAVQWLRERVTGT--------LQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATA 60

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEM 125
            +V    V + G     +  +  +  A   +A            ++A+TG+ GKT+T   
Sbjct: 61  CLVEQTGVEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTNGKTSTAWW 120

Query: 126 LTIALSSIKKT-------YACIGSYNNHIGVPLTLA----------------RMPVDVDF 162
           L  AL+S+ K         A +G+    +GVP  L                 R   D   
Sbjct: 121 LAGALNSLSKQELHAPTRCALVGTLG--MGVPPALESTGMTTPDPVRLQRAFRQYADQGL 178

Query: 163 GIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLE 218
           G   +  S +G  E R     +R  +A+ T     HL     + +   AK  +F+  GL+
Sbjct: 179 GACAIEASSIGLAESRLDGTPIR--VAIFTNFTQDHLDYHGSMADYWLAKRALFDWPGLQ 236

Query: 219 KTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--- 273
                 +N DD     L A+    AL + +I + G ++ A   +    Q    + +E   
Sbjct: 237 AA---VINVDDPAGAQLHAELTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVEGAQ 293

Query: 274 -VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            V LQ +        IG++   N+L  L  +      +  A++A S   P  GR +R   
Sbjct: 294 RVPLQTRV-------IGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRL-V 345

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           A  Q    L+   Y   P ++  A+  L  ++    G+   V G
Sbjct: 346 APGQ---PLVAVDYAHTPDALDKALQALRPLAVERGGQLWCVFG 386


>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
          Length = 471

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           +++DSR  A  + F AI G   DG  +I  A+ +G   +V   D VA   S++    +PV
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPV 60

Query: 86  FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             + ++   L+ LA        A LR    ++ +TG+ GKTTT ++L     ++ +T A 
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALR----LVGVTGTNGKTTTSQLLAQWSQALGETSAV 116

Query: 140 IGSYNN 145
           +G+  N
Sbjct: 117 MGTVGN 122


>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
 gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
          Length = 490

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 147/373 (39%), Gaps = 48/373 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S  S  +   + F   KG  +D H+ I   ++KGA  VVV  ++      L  P  
Sbjct: 25  ITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGAVAVVVEKEI-----DLDFPHI 79

Query: 87  GVDDVLGALNKLA------------------VAARLRSKATIIAITGSVGKTTTKEMLTI 128
            V D      K+A                     +  +   I  +  S+G+  +  +LT 
Sbjct: 80  QVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTTVMIYHMLTSLGEKGS--VLTT 137

Query: 129 ALSSIKKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVR 183
           A+  I +      SY + I  P     L+ M  + + G   F L +S    ++     VR
Sbjct: 138 AVKRILEN-----SYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + + T I+  HL      E    AK  +F+ L+  G   LN  +S  +    KS  + 
Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN--ESLADTFNRKSRKI- 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG SKNAD++L   +   E +   ++     + V    IG   A N    +  +
Sbjct: 250 -----TFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYNAAAAIAAL 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D      +L  F   EGR +  R A   G   ++D  +  +P +++  +  + +I
Sbjct: 305 HQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKI 362

Query: 364 SPHGEGRRIAVLG 376
           S   +GR I V G
Sbjct: 363 S---QGRVIVVFG 372


>gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
 gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 37/302 (12%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  ML+ I L +       IG     IG          ++  G  E  +
Sbjct: 116 VAVAGTHGKTTTTSMLSKILLEADTDPTLSIGGIFKDIGG---------NIRVGQSEYFV 166

Query: 170 SHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           +   E    FL+    P I++I+ I   HL  F  +++I  +  +  + L   GT+ +N 
Sbjct: 167 TEACEYTNSFLSFF--PKISIISNIDADHLDFFKDLDDIRHSFRKFAQLLPADGTLVING 224

Query: 228 D-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVV 284
           D D+  E+  +        TI ++G   + D+      + +    S+      G+++++ 
Sbjct: 225 DIDNVEEITDSLPC-----TIITYGSRDSFDYYPTDITYNEQGNPSFTAHLPGGETLDIS 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L ++ + ++     D  + ALS F    G  +R+      G  T+ID+
Sbjct: 280 LAVPGIHNVYNALASIAVANLFGISKDNIVAALSAFG---GTSRRFEYKGEIGGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  +KA ++               PH   R  A+L +  +   LS + H+ LA++
Sbjct: 337 -YAHHPTEIKATLTAAQNYPHNKIWCVFQPHTYTRTKALLDEFADA--LSLADHVVLADI 393

Query: 396 LS 397
            +
Sbjct: 394 YA 395


>gi|229175402|ref|ZP_04302917.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
 gi|228608234|gb|EEK65541.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   FS I ++ +A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFSDINDVFNAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis FAM18]
 gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis FAM18]
          Length = 445

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATKDIPLQG 273


>gi|229823042|ref|ZP_04449111.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
 gi|229787481|gb|EEP23595.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
          Length = 443

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 129/331 (38%), Gaps = 65/331 (19%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +P++     LG L K           T IA++G  GKT+T  +L   L  +      
Sbjct: 85  ELGLPIYRYHHFLGKLIK---------GYTSIAVSGCHGKTSTTGLLAHTLKHLAPLSYL 135

Query: 140 IGSYN-------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           IG          N+ G+     R                     FL++   P  A+IT +
Sbjct: 136 IGDGTGYGQESANYFGLEACEYRR-------------------HFLSY--EPDYAIITNV 174

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ IE++ SA    F G + T  +    +D++   L+A         +Y +G 
Sbjct: 175 DFDHPDYFTSIEDVFSAFTS-FAG-QTTKAVIACGEDAYLRQLEAPV------PVYYYGF 226

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD--- 309
             N+       ++  + S  +V  +GK +   H  +  +   N+L  L ++++LT +   
Sbjct: 227 DSNSTVYATNIERTQDGSDFDVTFEGKFLGRFH--VPTYGKHNILNALAVITVLTLEGFP 284

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
            D   + L+ F    G  +R+      G  T+ID+ Y  +P+ +KA I    Q       
Sbjct: 285 ADAIAQNLATF---TGVKRRFSVK-TVGDLTIIDD-YAHHPSEIKATIDATKQRYPDKRC 339

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                PH   R +A+L +  E   L+   ++
Sbjct: 340 IAVFQPHTFSRTVALLNEFAESLNLADQVYL 370


>gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 445

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 112/278 (40%), Gaps = 22/278 (7%)

Query: 92  LGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           +  ++++ +A R   K T II+ITG+ GKTTT   +   L          G+        
Sbjct: 74  ISVISEIDLAYRYMDKKTKIISITGTNGKTTTATKIYELLKEAGFDAELAGNAGFSFAKL 133

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           ++  + P   D+ + EL    L         V  HIA I  + P HL+ ++ +++    K
Sbjct: 134 VSDGKEP---DYVVLELSSYQLEN----DPEVHSHIAGIINLTPDHLTRYNSLDDYYKTK 186

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGKSKNADFQLRKWK 264
             IF+   +     +N DD   E+L+  S    I      K I+  G+ K   FQ     
Sbjct: 187 FNIFDHQNENDYALINLDDK--EILRIISENKDIDDKIKAKRIFLSGEKKADVFQKDGMI 244

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ +   + L   S   +    G H  +N+L  + +  IL  D++     LS   P E
Sbjct: 245 NVTDHNSQLIPLMKTSELSLK---GKHNLENILFIISVGMILNVDIEVMKSFLSSTKPLE 301

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            R + +     +G    I++S   N  S   AI    +
Sbjct: 302 HRLENF---FEKGKTVFINDSKGTNSESTIKAIEAFGK 336


>gi|108759161|ref|YP_633742.1| UDP-N-acetylmuramate--L-alanine ligase [Myxococcus xanthus DK 1622]
 gi|123374163|sp|Q1D0T1|MURC_MYXXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108463041|gb|ABF88226.1| UDP-N-acetylmuramate--alanine ligase [Myxococcus xanthus DK 1622]
          Length = 472

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 162/395 (41%), Gaps = 53/395 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+     IPV    ++L  L +L  A         +A+ GS GKTTT  M+   L
Sbjct: 88  NPEVVAA-RQRKIPVIPRAEMLAELMRLKYA---------VAVAGSHGKTTTTSMVATVL 137

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           S+      A +G   N +     L +   M V+ D    E   S L       HL  P I
Sbjct: 138 SAAGLDPTAVVGGKVNVLDSNAKLGKSELMVVEAD----ESDGSFL-------HL-HPSI 185

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++T I P H+ ++  ++ + SA  E    +   G   L  D+   + L  +      K 
Sbjct: 186 AIVTNIDPEHMDHYGDLDTLQSAFVEFCNRVPFYGLNVLCLDNPNVQALLPRIE----KR 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             ++G S  AD++L   +     +      + +S+ E     +G H A N L  + +   
Sbjct: 242 FVTYGSSHMADYRLENIQLDGFTTRFNAYRREESLGEFRVRMVGAHNAFNALAVIAVAEE 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------- 358
           +   ++T  ++L+ F    G  +R+         T++D+ Y  +P  + A ++       
Sbjct: 302 MDIPLETVRESLAEFG---GVQRRFTVRGEAQGITVVDD-YGHHPTEVLATLAGARRAFG 357

Query: 359 --VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
             V+    PH    R     D+  M E + SF+  D+  V S+Y      + G    AL 
Sbjct: 358 RRVVVAFQPH----RYTRTHDL--MKEFTTSFNDSDVLFVTSVYAAGEERIHGATGDALA 411

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
           DA+    H  V + E    L   +   L +GD+V+
Sbjct: 412 DAVRAHGHRDVTFVEKRTDLPAALLPRLREGDLVL 446


>gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
          Length = 499

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 25/219 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSRS+   + F A  G   DG  FI  A+++GA  V+          + S+P   V D+ 
Sbjct: 22  DSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWEEHGFKWNPTWSVPNLAVSDLR 81

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
                +A  V  +   K  ++ ITG+ GKT+    L  +  ++ +  A IG+  N  G P
Sbjct: 82  HQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSALIGTLGN--GFP 139

Query: 151 LTL---ARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             L   A    D                   + E+    L + R   + V   +A++T +
Sbjct: 140 EALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRV--NGVHFDVALLTNL 197

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              HL     ++  A+AK  +F+       + LN DD F
Sbjct: 198 TRDHLDFHGDMQSYAAAKKRLFDWASLKYAV-LNLDDMF 235


>gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
 gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
          Length = 468

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 30/294 (10%)

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +++P ++V+T I P HL+ + G  E++     E    L   G   +  DD     +  + 
Sbjct: 169 ILQPVMSVVTNIEPDHLATYGGSFEKLKDTFVEFLHHLPFYGLAVMCVDDPVVREILPR- 227

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGI-GYHMAQNML 297
             +  +T+ ++G  + AD Q    +     S  +V L  GK ++ +   + G H  QN L
Sbjct: 228 --VTCQTL-TYGIQEGADIQAINLRFEGATSVFDVALPNGKRLDGITLNMPGEHNVQNAL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASM 353
             L I   L    D+   AL  F    G G+R++         G  TL+D+ Y  +P+ M
Sbjct: 285 AALAIAHELGVSGDSISSALQSFG---GIGRRFQLLGDIQCGNGSVTLVDD-YGHHPSEM 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
            A +       P    RR+ V+         +Q    D A VLS  +   ++ V+ +G  
Sbjct: 341 SATLRAARNAWPD---RRL-VVAFQPHRYSRTQDLFEDFASVLSAADALCLTEVYAAGEP 396

Query: 411 VLALKDALPRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   D    +  V         + E+++ L   +Q  L +GDV++   + S G
Sbjct: 397 AVPGADGRSLAAAVRARGQVNPVFVESVEALPEVLQGVLEEGDVLLTLGAGSIG 450


>gi|73662332|ref|YP_301113.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|109892744|sp|Q49YH1|MURC_STAS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72494847|dbj|BAE18168.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 437

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 42/288 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPAS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  ++++ +A  E+   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKDVDDVFNAFQEMAHNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD+    ++A         +Y +G S   D      +   + +  +V  +G+  + 
Sbjct: 201 IAWGDDTHLRKIEADV------PVYYYGFSNKDDVYADNLEISEKGTKFDVYFKGEYFDT 254

Query: 284 -VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  + + ++D   +AL  F    G  KR       G   L+
Sbjct: 255 FLSPQFGDHNILNALSVITISYLESLNIDNIKEALETF----GGVKRRFNETKVGNQVLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCE 380
           D+ Y  +P  + A I           V++   PH   R  A LG+  E
Sbjct: 311 DD-YAHHPREISATIETARKKYPNKDVIAVFQPHTFSRTQAFLGEFAE 357


>gi|291301477|ref|YP_003512755.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570697|gb|ADD43662.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
          Length = 473

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP ++++T I   HL+ +  IEE+    AE   G + +G+I +  DD     +  +  A 
Sbjct: 181 RPFVSILTNIDVDHLNTYGTIEELVEGFAEFLRGTDPSGSIIVCADDERAAAVGKRLAAE 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301
           G +T+ S+G    AD ++ +    +  +      +G+ +      + G H+A N    L 
Sbjct: 241 G-RTVVSYGTDAEADLRIGEITIDASGARYTASYRGRDLGSFFVTVPGRHLALNSAAALL 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  DV+     L+ F    G  +R+          + DE Y  +P +M AA+S L 
Sbjct: 300 AGLLLDVDVEELRTGLAAF---TGVRRRFELTGTVAGVRVYDE-YAYHPTAMNAALSTLK 355

Query: 362 QISPHG 367
            I+  G
Sbjct: 356 TIAEPG 361


>gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 169/407 (41%), Gaps = 60/407 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSI 83
           V  +S DSR ++    FF  KG  ++  +++  A+++GA   +   V TD +    + S 
Sbjct: 39  VTDLSYDSRKVSDGTLFFC-KGLKFNP-EYLASAIKEGATAAISELVYTDKLDQ-EAQST 95

Query: 84  PVFGVDDVLGALNKLAVAAR-----LRSKATIIAITGSVGKTT----TKEMLTIALSSIK 134
           P   V DV  A+   AV AR        K  +I  TG+ GKTT    T+ +L      + 
Sbjct: 96  PQIIVTDVQKAM---AVIARHFYGCPDEKLELIGFTGTKGKTTSVYFTRHILAHEFGPVV 152

Query: 135 KTYA----CIGSYN---NHIGVP--LTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184
             ++    C+   N    H+  P  L L RM  + VD G+  L M    +    + +   
Sbjct: 153 GQFSSIDECVDGKNFIEAHLTTPESLDLFRMMKEAVDNGMKYLAMEVSSQAYKKSRVYGL 212

Query: 185 H--IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           H  I V   I+P H+S       ++    K++I   +  + T+ LN    ++ELL  K+H
Sbjct: 213 HFNIGVFLNISPDHISLVEHPTFDDYLWCKSQI---IVNSDTVILNRYMDYYELLAQKAH 269

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQ 294
            LG K I +FG  + +AD++        +  + +V     ++  V         G+    
Sbjct: 270 ELGKKLI-TFGSDESDADYRY----HGKDHGYFDVSTHNDNLPEVTGEFRVMIPGHFNYS 324

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPAS 352
           N L  + + + L  D     + L     KE +  G+      N G    +D  Y  N  S
Sbjct: 325 NALAAITVSAQLKDDTSDFAQGL-----KETKVPGRMEFLKNNAGMVACVD--YAHNYLS 377

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  +   +    P  +GR I V+G     G  ++S   D+   LS Y
Sbjct: 378 LSESFKFMKHEYP--DGRLIVVIG---AAGGKAESRRKDVGRALSEY 419


>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
          Length = 489

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 152/394 (38%), Gaps = 58/394 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F  + G  ++ HDFI   ++KGA  +V++ D+    G   I V      L
Sbjct: 28  DSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKGAHAIVISQDVSLKEGMTYIRVKDTRIAL 87

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---- 148
            AL   A       +  ++ ITG+ GKT++  M+   L    K    IG+    IG    
Sbjct: 88  -ALLSCAYFNYPSKELKVVGITGTKGKTSSSLMIKSILEHAGKKVGIIGTNGTFIGDIHE 146

Query: 149 -----VPLTLARMPV-------DVDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVITT 191
                 P +     +       D ++ + E     L M+ +  I F          V T 
Sbjct: 147 PTANTTPESYELQRIMRKMVEHDCEYCVMEVSSQALKMNRVAGIEF-------DYGVFTN 199

Query: 192 IAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+  +      E  + K  +F+  +       N DD  FE             + +
Sbjct: 200 ISPDHIGPNEHKDFAEYMACKKHLFDFCQ---VGLFNKDDEHFEEFTKDVPC----KVLT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI---V 303
           +   K++D +    +  +E   + +    K +          G   A N L+ + I   +
Sbjct: 253 YSIEKDSDLKALHIELYNENGELGITFDTKGLINASFKASMPGKFNAYNALVAIMICYLI 312

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            + T D+   +  + V     GRG+    + +  +  LID  Y  N  S ++ IS + Q 
Sbjct: 313 DVPTKDIQNTLPQVHVL----GRGQVMHVSPD--YSVLID--YAHNGVSFESIISTVEQY 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +P+   + I V G     G+ S++   +  EV++
Sbjct: 365 NPN---KLIVVYG---SGGKRSKTRRYESGEVVA 392


>gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 495

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 142/369 (38%), Gaps = 30/369 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           V+G+ +DSR + P +AF AI G    G  F   A Q GA  ++            + +I 
Sbjct: 22  VSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPADAIA 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V G+   LGA+  L          T++ +TG+ GKT+T ++L  A          IG+  
Sbjct: 82  VPGLRSRLGAMADL-FHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLRGGSIGTLG 140

Query: 145 N--HIGVPLTLARMPVDVDFGIFELGMSHLG----EIRFLTHL--------VRPHIAVIT 190
              H  V  T    P+ +       G+   G     +   +H         V   +AV T
Sbjct: 141 AGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGVHYDVAVFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTI 247
            +   HL     +     AKA +F  EGL    +  LN DD F  +L  + +  + +  +
Sbjct: 201 NLTRDHLDYHGDMASYGEAKARLFLREGLR---SAVLNLDDEFGRVLAGRLAEGVRLVGV 257

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S G+ + A  Q R  +  +     E+    +S  V    +G     N+L   G++  L 
Sbjct: 258 SSRGQ-EGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGGVLHALG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V      LS   P  GR  R       G   L+   Y   P +++ A   L+ +  H 
Sbjct: 317 DSVACVAAILSRLQPVAGRMNRLG---GDGERPLVVVDYAHTPDALEQA---LASLRAHA 370

Query: 368 EGRRIAVLG 376
             R   V G
Sbjct: 371 GARLTCVFG 379


>gi|86749119|ref|YP_485615.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
 gi|109892730|sp|Q2IYK6|MURC_RHOP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86572147|gb|ABD06704.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
          Length = 468

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 118/286 (41%), Gaps = 30/286 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    +AI G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 100 LAELMRLKS---CVAIAGTHGKTTTTSMVAALLDAGDFDPTVINGGIINAYG---TNARL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E   S   +  FL   +   +A++T + P HL +F   + +  A     E 
Sbjct: 154 GAG-DWMVVEADES---DGTFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVEN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + L  K   +  + I ++G++  AD +L + K     S  +V  
Sbjct: 208 VPFYGFAVMCIDHPVVQALVGK---IEDRRIITYGENPQADARLLELKPSGSGSTFKVAF 264

Query: 277 QGKSMEVVHH-------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +     H          G H A N    + +   L    DT  KAL+ F    G  +R
Sbjct: 265 RDRKAGTAHEIAELMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +    +    T+ID+ Y  +P  + A +    Q +   +GR IAV+
Sbjct: 322 FTKTGDWNGVTIIDD-YGHHPVEIAAVLKAARQST---DGRVIAVV 363


>gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 472

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 55/325 (16%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           F  HA    +GA +VVV       N ++VA+   L IPV    ++L  L       R R 
Sbjct: 57  FFGHAASNVEGASVVVVSTAISQENPELVAA-RELRIPVVRRAEMLAEL------MRYRH 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVD 159
               IAI G+ GKTTT  ++T   S   +  T+   G       N  +G    L      
Sbjct: 110 G---IAIAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGCSRYL------ 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
                  +  +   +  FL HL +P + V+T I   H+  + G  E +     +    L 
Sbjct: 161 -------IAEADESDASFL-HL-QPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLP 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  DD     L  +      + + ++G S++AD +L  ++QC +Q +  +  + 
Sbjct: 212 FYGLAVMCIDDPVVRELLPRVG----RPMLTYGFSEDADVRLMDYQQCGQQGFFTIVRKD 267

Query: 279 K-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCA 333
           K  ++V  +  G H A N    + + +    D D  I+AL+ F   +G G+R+       
Sbjct: 268 KPELKVTLNVPGRHNALNATAAVAVATEEGVDDDAIIRALAEF---QGTGRRFDHLGEFE 324

Query: 334 LNQGFFTLIDESYNANPASMKAAIS 358
              G   L+D+ Y  +P+ +   I 
Sbjct: 325 TGNGTAMLVDD-YGHHPSEVDVTIQ 348


>gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 511

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 30/247 (12%)

Query: 19  IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +GI+P        +N IS +S+ +     F  + G + DG  F + A++ GA   ++ + 
Sbjct: 13  VGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGSA 72

Query: 74  MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129
               IGS     +  ++D L  +    VA    R   K  +I +TG+ GKTT   +L   
Sbjct: 73  AKEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132

Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173
           L    K  A  G+ +N   G                    A +  + +F I E+    + 
Sbjct: 133 LKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230
           + R          A+ T +   HL   S +E     K ++F     +EK G   LN+DD 
Sbjct: 193 QKRI--SGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVLNHDDP 250

Query: 231 FFELLKA 237
           +   L +
Sbjct: 251 WISKLSS 257


>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 507

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 37/317 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P + F A+ G   DG  ++  AV +GA  VV        +GS  +P F
Sbjct: 24  VTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSRGAVAVVSEK----PVGSSQVPFF 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL  +A     R   + T++ +TG+ GKTTT  +L    ++   +   IG+  
Sbjct: 80  KVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTTTTYLLEAISAAAYASTGVIGTLG 139

Query: 145 -----------NHIGVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAVIT 190
                      N    PL L R+  + VD G+  + M  S    ++   H +    A  T
Sbjct: 140 YKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVMEVSSHALVQERVHGLTFKAAAFT 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSF----FELLKAKSHALGIK 245
            +   HL     IEE   AK  +F E L  TG   +N DD++    +  L+ +       
Sbjct: 200 NLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAVVNGDDTYASRIYNELRGQKRMAWKF 259

Query: 246 TIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302
           +    G+   AD  F L+  K   +    ++ ++ +        +G H  +N+L   G+ 
Sbjct: 260 SRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRL-------VGPHNLENILAATGVA 312

Query: 303 --VSILTADVDTAIKAL 317
               I   DV T I+ +
Sbjct: 313 LGAGIARRDVQTGIERM 329


>gi|317121120|ref|YP_004101123.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591100|gb|ADU50396.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
          Length = 479

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 10/202 (4%)

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-EL 234
           FL +L  P IAV+T + P HL ++ G   ++  A A     +   G +    D     +L
Sbjct: 178 FLRYL--PEIAVVTNVEPEHLDHYGGDFAQLLQAFARFLRNVRPGGLVVACGDHPVLRQL 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293
           L  ++ A G++ +    +++++D + R  +   E +   V   G+ +  V   + G H  
Sbjct: 236 LADRTPAPGVRVVRYGMEAEDSDLRARDVQAGPEGTRFTVWQGGRPLGEVRLAVPGLHNV 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L      A  AL+ FH   G  +R++   N+    ++D+ Y  +P  +
Sbjct: 296 LNALAAVAVGLELRVPFAAAAAALASFH---GAKRRFQVIYNRDGILVVDD-YAHHPTEI 351

Query: 354 KAAISVLSQISPHGEGRRIAVL 375
           +A +    Q    G GR IAV 
Sbjct: 352 RATLRAARQRQGEG-GRVIAVF 372


>gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
          Length = 561

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +PV 
Sbjct: 81  VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAAVLTDPAGADRAAATGLPVL 140

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             ++    + +LA          +  I ITG+ GKTTT  ++   L +  +    +G+  
Sbjct: 141 VTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTTTVYLMEGGLRAAGRATGLVGTVE 200

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             +AV 
Sbjct: 201 TRIGEERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVAVF 259

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             ++P H+   SG+E+   AKA++F    ++    +N DD++   L A++
Sbjct: 260 NNLSPEHMEFHSGMEDYFQAKAQLFT-PARSRRGVVNLDDAYGRRLAAEA 308


>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
 gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
          Length = 456

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 29/233 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-I 164
           SK  + A+TG+ GKTTT  ++   L S       +G    +IG P T   +  +     +
Sbjct: 105 SKGKLCAVTGTNGKTTTVSLIGEILKSEYSDTHVVG----NIGNPFTAEALETEEQSATV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L  I        P+++ IT I P HL     ++   + K  I E  E+  +I 
Sbjct: 161 CEVSSFQLETIVDF----HPNVSAITNITPDHLDRHKTMKNYIAVKESIAENQEEEDSIV 216

Query: 225 LNYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRK----------WKQCSEQSWME 273
           LNY D   EL K  K  +L  K ++   + +  D + ++          +K+  ++  + 
Sbjct: 217 LNYMDP--ELRKFGKKRSLKPKVLWFSSEEEPKDTKEKESLFLRGDTFYYKKEDKEEKL- 273

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                K +    H +G H  +N+L  +G+   +   +D  IK    F P E R
Sbjct: 274 --FTTKDV----HLLGKHNYENILCAVGVGLKMGVPMDKIIKVCKKFKPVEHR 320


>gi|189029215|sp|A5CD22|MURC_ORITB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 490

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 47/365 (12%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            GAG+VV+       N +  A+I +  IP+    ++L  L        +RSK  I AI+G
Sbjct: 71  NGAGIVVISSAIKHNNPEYQAAILA-KIPIISRAEMLAEL--------MRSKVAI-AISG 120

Query: 116 SVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           S GKTTT  ++     +  +  T    G  NN      T A +  D D+ I E   S   
Sbjct: 121 SHGKTTTTALIACIFEACGLHPTVITGGIMNNR----ATNAYLG-DGDYFIAEADESDAT 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I+     +   IAVIT I   HL  +   + + SA  +    L   G      DD   +
Sbjct: 176 FIK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQ 230

Query: 234 LLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVH 285
            L AK   +  + I ++G  SKNA  Q       +  S  +V+++  +        +V  
Sbjct: 231 NLIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTL 287

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L  + I   L  D++        F   +G  +R+         T+ID+ 
Sbjct: 288 PALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD- 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISH 403
           Y  +PA + A I     I+   +GR IAV        + +L   F      V  LY IS 
Sbjct: 344 YAHHPAEIIATIDTARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQLY-ISQ 402

Query: 404 VWLSG 408
           ++ +G
Sbjct: 403 IYDAG 407


>gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri DSM 4166]
          Length = 487

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 70/389 (17%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLS 82
            +  +++DSR +   + F A+ G  +DG D +  A+ +GA  V   +   D   +  ++ 
Sbjct: 17  LIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQALTGAAVM 76

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +PV     + G L+  A+A R   + +    ++ +TG+ GKT+  +++  AL  + +   
Sbjct: 77  VPVH---HLAGQLS--AIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGEPCG 131

Query: 139 CIGSYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRF 177
            IG+                 + IGV  TLA++       V ++     L    +  + F
Sbjct: 132 IIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQGRVAALEF 191

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                   +AV T ++  HL     +E   +AKA +F G+       +N DD F   L  
Sbjct: 192 -------DVAVFTNLSRDHLDYHGTMEAYGAAKARLF-GVPGLSCRVINLDDGFGRALAG 243

Query: 238 K-------SHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +       S++L   + Y +      D      R      E+S     L           
Sbjct: 244 EERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL----------- 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N+L  +G +  +   +D  +  L       GR +R    L  G   L+   Y 
Sbjct: 293 -GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQR----LGGGDRPLVVVDYA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++    VL+ + PH  GR + + G
Sbjct: 348 HTPDALE---KVLTALRPHARGRLLCLFG 373


>gi|307824832|ref|ZP_07655055.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
 gi|307734190|gb|EFO05044.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
          Length = 480

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 152/366 (41%), Gaps = 42/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    +A   +  T+  IG   N  G    L         G + + 
Sbjct: 119 IAVAGTHGKTTTTSLTASILAEGGLDPTF-VIGGRLNSAGSNAKLG-------LGHYLVA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P +A++T I   H++ + G  + +     E    L   G   +  
Sbjct: 171 EADESDASFL--YLQPMMAIVTNIDQDHMATYEGSYQRLKDTFKEFLHHLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVH 285
           DD   E ++A    +  K + ++G  ++AD +    KQ    +  +V  +G    ++V  
Sbjct: 229 DD---EGVRAVLPEIS-KPVTTYGVHEDADVRAVNIKQEGMHTSFDVIRRGDYPPLQVTL 284

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTL 341
           +  G+H   N L  + + + L       IK+L  F   +G G+R++      + +G  TL
Sbjct: 285 NMPGWHNMLNALAAISVATKLAVGDAAIIKSLGAF---KGIGRRFQLNGDLPMGEGKLTL 341

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A +  L Q  P    RR  ++            F  D  +VLS  ++
Sbjct: 342 VDD-YGHHPREIAATLEALRQAWPD---RRSVIVFQPHRYTRTRDLFE-DFVQVLSTVDV 396

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
                V+ +G   +   D  AL R+I V       + E  + L   +   ++  DV++  
Sbjct: 397 LILMDVYAAGETAIPGADGRALSRAIRVRGQVDPVFVENWEELPQILAGIVLADDVILTM 456

Query: 451 SSNSCG 456
            + + G
Sbjct: 457 GAGNVG 462


>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 484

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 38/387 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR       F A++G H DGH F+  A+Q+G  L++V  +M A   S  +   
Sbjct: 24  VTSLCFDSRQANEGSLFVAVRGVHTDGHLFVEKAIQQGCTLIMVE-EMPAE-KSEGVTYM 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL   A         +  ++ +TG+ GKTT   +L    +++      + +  
Sbjct: 82  MVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQ 141

Query: 145 NHIG---VPLT-----------LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N IG   +P T           L R  VD   D+   E+    + + R     +R    +
Sbjct: 142 NQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFMEVSSHAVVQQRIAG--LRFAGGI 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + I   HL      +    AK + F+ L++      N D+    ++   + A       
Sbjct: 200 FSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNGDEKNGSVMLQNTFAHK----K 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G    ADF+ +  +  S    M + ++G   EV    +G   A N+L   G   +L  
Sbjct: 256 TYGLKGVADFKAKIIE--SHFDGMLLNIEGH--EVWVKLVGEFNAYNILAVYGAAILLEQ 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +    + ALS     EGR +        G   ++D  Y   P ++   +S ++ +    E
Sbjct: 312 ETVKVLTALSQITGAEGRFEAITS--KNGVIGIVD--YAHTPDAVANVLSTINNLRKK-E 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEV 395
            + I VLG  C  G+  ++   ++AEV
Sbjct: 367 QQIITVLG--CG-GDRDKTKRPEMAEV 390


>gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
 gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
          Length = 459

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 39/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  L + +         +  I V   L+ +  ++  G  E  +S
Sbjct: 114 IAVAGTHGKTTTTSMISEILLAAQT--------DPTISVGGILSSIHGNLRVGDSEYFIS 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E        RP  ++I  I   HL  F  I +I  +  E        G   +N +  
Sbjct: 166 EACEYTNSFLNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID 225

Query: 231 FFELLKAKSHALGI-KTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVH 285
            +E + A     G+ + I ++G     DF         K C+  + M    QG  +  V 
Sbjct: 226 RYEEIVA-----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMR---QGSPLFDVK 277

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             + G H   N L  + + + L  D ++ +  L  F    G  +R++        T+ID+
Sbjct: 278 LSVPGAHNVSNALAAIALSTTLGLDEESILTGLDKFG---GADRRFQYKGKVNGVTIIDD 334

Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  ++A ++   +           PH   R  A L D  ++  LS +  + LA++
Sbjct: 335 -YAHHPTEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADV--LSMADVVVLADI 391

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    +   +S   +L L   L + ++ HY  + + +  F+  + V+GD+++ 
Sbjct: 392 YAAREQNTYGISSKDILDL--LLEKGVNAHYFPSFEEIEKFLSENCVNGDLLIT 443


>gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 488

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 115/272 (42%), Gaps = 38/272 (13%)

Query: 19  IGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           +GI   G +N   +++DSR+      F AIKG   DG  +I  A+  GA  V+   D   
Sbjct: 8   LGIDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQ 67

Query: 77  SIGSL----SIPVFGVDDVLGALNKLA-VAARLRSK-ATIIAITGSVGKTTTKEMLTIAL 130
               +     IP+     +   L++LA V  +  SK  T++ +TG+ GKTTT ++L    
Sbjct: 68  QHLQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWT 127

Query: 131 SSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGE 174
             +  T A +G+  N +           G  + +     D      DF   E+  SH G 
Sbjct: 128 QLLGHTGAVMGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVS-SH-GL 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     V    AV T ++  HL     +E  A+AK  +F  L+    I ++ DD    +
Sbjct: 186 VQHRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQI-IDADDPVGAV 244

Query: 235 LKAK-SHALGIKTIYSFGKSKNADF--QLRKW 263
             A+  HA+ +        S  ADF  Q   W
Sbjct: 245 WLAEMPHAVAV--------SAKADFLPQQANW 268


>gi|148284352|ref|YP_001248442.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Boryong]
 gi|146739791|emb|CAM79666.1| UDP-N-acetylmuramate--alanine ligase [Orientia tsutsugamushi str.
           Boryong]
          Length = 502

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 47/365 (12%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            GAG+VV+       N +  A+I +  IP+    ++L  L        +RSK  I AI+G
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAILA-KIPIISRAEMLAEL--------MRSKVAI-AISG 132

Query: 116 SVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           S GKTTT  ++     +  +  T    G  NN      T A +  D D+ I E   S   
Sbjct: 133 SHGKTTTTALIACIFEACGLHPTVITGGIMNNR----ATNAYLG-DGDYFIAEADESDAT 187

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I+     +   IAVIT I   HL  +   + + SA  +    L   G      DD   +
Sbjct: 188 FIK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQ 242

Query: 234 LLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVH 285
            L AK   +  + I ++G  SKNA  Q       +  S  +V+++  +        +V  
Sbjct: 243 NLIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTL 299

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L  + I   L  D++        F   +G  +R+         T+ID+ 
Sbjct: 300 PALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD- 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISH 403
           Y  +PA + A I     I+   +GR IAV        + +L   F      V  LY IS 
Sbjct: 356 YAHHPAEIIATIDTARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQLY-ISQ 414

Query: 404 VWLSG 408
           ++ +G
Sbjct: 415 IYDAG 419


>gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 503

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 157/385 (40%), Gaps = 59/385 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GI+IDSR + P   F A+ G    G  F+  A++ GA  +V +    A IG       
Sbjct: 28  VSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGATAIVTDPAGAAIIG------- 80

Query: 87  GVDDVLGALNKLAVAARLR-------------SKATIIAITGSVGKTTTKEMLTIALSSI 133
             D ++G    L V   +R               A + A+TG+ GKT+    L       
Sbjct: 81  --DTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTSVTSFL------- 131

Query: 134 KKTYACIGSYNNHIGV-----------------PLTLARMPVD-VDFGIFELGM---SHL 172
           ++ +   G    +IG                   LTL R+  +  + G+    M   SH 
Sbjct: 132 RQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAMEASSHG 191

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSF 231
            E R L  ++   +A  T  +  HL      +   +AKA +F   L + G   +N DD  
Sbjct: 192 IEQRRLEGVML-SVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVINIDDPK 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +   +   G + I   GK+  A  +L   +  +    +  + +G++ +     IG  
Sbjct: 251 GADIARVAEDRG-QEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLDLIGGF 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A+N+L+  G+ +I + D D A    +  H    RG R + A  +G    +   +   P 
Sbjct: 310 QAENVLLAAGL-AIASGD-DPAHVFAAFPHLTTVRG-RMQLAARRGNGASVFVDFAHTPD 366

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           +++   +VL  I PH  GR +A++G
Sbjct: 367 AIE---TVLQAIRPHVMGRVVAIVG 388


>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
 gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
          Length = 483

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I  DSR +   + F AI+G + DGH FI  A++ GA +++ + +      S  I V 
Sbjct: 23  VNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENGAKVIICSKNTEFYENSTYIKVE 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L A+          ++  +I ITG+ GKTT+  M+   L         IG+  N 
Sbjct: 83  NTRKAL-AIMASNFYGNPSNEIKLIGITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANF 141

Query: 147 IG 148
           IG
Sbjct: 142 IG 143


>gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
 gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
          Length = 564

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 22/243 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++ P + + A+ G    G DF   A   GA  V+ + +      +  +PV 
Sbjct: 83  ITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAAAVLTDPEGAERAAATGLPVL 142

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    + +LA     R    +  + ITG+ GKTTT  ++   L +  +T   +G+  
Sbjct: 143 AVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAYLVEGGLRAAGRTTGLVGTVE 202

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             +AV 
Sbjct: 203 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVAVF 261

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
             ++P H+   +G+E+   AKA++F E   + G +  N DD +   L AK  ++ + T  
Sbjct: 262 NNLSPEHMEFHTGMEDYFQAKAQLFTERRARLGVV--NLDDEYGRRL-AKEASIPVVTFS 318

Query: 249 SFG 251
           + G
Sbjct: 319 AAG 321


>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
 gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
          Length = 487

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 70/389 (17%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLS 82
            +  +++DSR +   + F A+ G  +DG D +  A+ +GA  V   +   D   +  ++ 
Sbjct: 17  LIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQALTGAAVM 76

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +PV     + G L+  A+A R   + +    ++ +TG+ GKT+  +++  AL  + +   
Sbjct: 77  VPVH---HLAGQLS--AIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGEPCG 131

Query: 139 CIGSYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRF 177
            IG+                 + IGV  TLA++       V ++     L    +  + F
Sbjct: 132 IIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQGRVAALEF 191

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                   +AV T ++  HL     +E   +AKA +F G+       +N DD F   L  
Sbjct: 192 -------DVAVFTNLSRDHLDYHGTMEAYGAAKARLF-GVPGLSCRVINLDDGFGRALAG 243

Query: 238 K-------SHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +       S++L   + Y +      D      R      E+S     L           
Sbjct: 244 EERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL----------- 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N+L  +G +  +   +D  +  L       GR +R    L  G   L+   Y 
Sbjct: 293 -GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQR----LGGGDRPLVVVDYA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++    VL+ + PH  GR + + G
Sbjct: 348 HTPDALE---KVLTALRPHARGRLLCLFG 373


>gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis MC58]
 gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis MC58]
 gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
 gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis CU385]
 gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
          Length = 445

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 30/180 (16%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRDD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251


>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 492

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 170/410 (41%), Gaps = 66/410 (16%)

Query: 23  PQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           PQ   V GI+ DSR + P   F AIKG   DGH FI +A + GA                
Sbjct: 23  PQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGA---TAVVVEREVEVPA 79

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + V  V D   AL  LA         K T++ +TG+ GKTTT  ++      +      
Sbjct: 80  DLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKTTTTHLIAAIWRQVGLKPGV 139

Query: 140 IGSYNNHIG---VPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+ +N IG   +P+T            +A M   DV     E+    L   R     V+
Sbjct: 140 VGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVAMEVSSHALALNRVAG--VK 197

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV T I   HL     +E+  +AKA++FE   K   I  N DD   E L   S    
Sbjct: 198 YDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDIKYAVI--NADDQAAEQLFKISRG-- 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-----------QSWMEVQLQGKSMEVVHHGIGYHM 292
              +Y++G   NAD + +  +  +            +  +E++L G+   V +    Y +
Sbjct: 254 --KVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKLTGR-FNVYNSLAAYTV 310

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANP 350
                M LG   +   DV  A++ ++      G   R+   ++QG  F  ++D  Y   P
Sbjct: 311 G----MVLGYNGM---DVKAALEGVT------GVAGRFEL-VDQGQDFAVVVD--YAHTP 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++  ++   QI+   +GR I V G  C  G+  ++    + E+ + Y+
Sbjct: 355 DGLENILTTARQIT---KGRLITVFG--CG-GDRDRTKRPIMGEIAARYS 398


>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
 gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
          Length = 450

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 19/220 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P + +A+     
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++    + L  ++ A    T+  F   +  D    +  Q   +   EV +    
Sbjct: 218 DFLVLNFNQDLAKELATRTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVIMAADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + V     G H  +N L T+ +  +   D     + LS F
Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGIDNQIIKETLSAF 307


>gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
 gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
          Length = 445

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLAR 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 497

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 110/302 (36%), Gaps = 71/302 (23%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   +  +  DSR + P   F A+ G + DGHDF   AVQ+GA  +VV   + A      
Sbjct: 17  PAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVAAPA---H 73

Query: 83  IPVFGVDDVLGALNKLA----------------------------VAARLRSKATIIAIT 114
           + V   D    AL +LA                            V A L  +  ++ +T
Sbjct: 74  VAVIRTDSTRAALGRLAAEFWRHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQGHVVGLT 133

Query: 115 GSV-----GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           G+V     G+     + T   S +++ +  +        V          ++     L M
Sbjct: 134 GTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAV----------MEASSQGLDM 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIF 224
           + + ++ F        + + T +   HL           AKA++F  L + G        
Sbjct: 184 NRVDDVEF-------DLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAV 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLR----KWKQCSEQSWMEVQ 275
           LN DD   E  ++ +       +Y++G   +     AD +L     + + C+ Q  + V 
Sbjct: 237 LNADDPASEYYRSVTEV----PVYTYGFRPDAMVRAADVELSPAGTRLRLCTPQGEVPVS 292

Query: 276 LQ 277
           L+
Sbjct: 293 LR 294


>gi|315646029|ref|ZP_07899150.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
 gi|315278790|gb|EFU42104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
          Length = 479

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165
           +A II ITGS GKTTT   +   L S   +    G    +IG PL+ A      D + + 
Sbjct: 111 EAPIIGITGSNGKTTTTTWVGKLLESAGLSPIVAG----NIGTPLSEAAAEATPDNWMVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T   RP IA +  IA  HL    G+++  S+KA +F       T  L
Sbjct: 167 ELSSFQLKG----TEEFRPRIACLLNIAETHLDYHGGMDDYISSKARLFVNQTADDTAVL 222

Query: 226 NYDD 229
           N+DD
Sbjct: 223 NWDD 226


>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
 gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
          Length = 466

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165
           A I A+TGS GKTTT  ++   L   ++ Y C      +IG+PL L+++    D D  + 
Sbjct: 117 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T    P++AV+T ++P HL     +EE   AK  IF        + L
Sbjct: 172 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVFAKKNIFRYQSAEDRLVL 226

Query: 226 NYDDS 230
           N+D+ 
Sbjct: 227 NFDND 231


>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
 gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
          Length = 515

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 162/395 (41%), Gaps = 35/395 (8%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL    +LL A Q    G+  +  V GI+ DSR + P + + A+ G    G +F   A 
Sbjct: 10  RPLLGLVELLSA-QADGPGLA-KVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAA 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGK 119
             GA  +  +        +  +PV   DDV   L + A  V        ++I +TG+ GK
Sbjct: 68  AAGAVAIWTDPAGRHRAAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGK 127

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMSHLG--- 173
           TTT  +L   L +     A IG+    IG   +P +L   P   D       M  +G   
Sbjct: 128 TTTVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLT-TPEATDLHAIFAKMREVGVGA 186

Query: 174 -EIRFLTHLVRP--------HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTI 223
             +   +H +           +AV T ++  HL   + + +  +AKA++F     + G +
Sbjct: 187 AAMEVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGVV 246

Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSM 281
             N DD +  EL +     L   T +S     +AD++    +  ++ S    V   G   
Sbjct: 247 --NVDDGYGRELTRIAQVPL---TTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEA 301

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N L    IV+++ A +   + A  V       G+       Q F  L
Sbjct: 302 DVSIQLPGPFNVANALAA--IVALVEAGLPLQVAAAGVGTLTGVPGRLEPIDEGQDFTAL 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D  Y+  P +++A ++ L +++    GR I VLG
Sbjct: 360 VD--YSHKPGAVEAVLTSLREVT---AGRLIVVLG 389


>gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Bradyrhizobium sp. ORS278]
          Length = 486

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 145/349 (41%), Gaps = 45/349 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            HDLL    G   G+ P+     V+G++ DSR++ P + FFA+ G   DG  FI  AV  
Sbjct: 3   LHDLL----GDQAGLDPRVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFIAAAVAA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT-- 121
           GA  V  +    A  G L +P   + +   AL   A     R  ATI A+TG+ GKT+  
Sbjct: 59  GAIAVAGHE---APAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAVTGTSGKTSVA 115

Query: 122 --TKEML-----------TIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             T+++            T+ L S K+T Y  + + +     P+ L R  +D    I + 
Sbjct: 116 AFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPD-----PIALHRQ-IDE---ITQD 166

Query: 168 GMSHL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           G++HL       G  ++    VR      T ++  H+     +    +AK  +F  L   
Sbjct: 167 GVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVPP 226

Query: 221 G---TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           G    I  +++ S   +  A +  L + T+ + G    A  +L           +E+Q  
Sbjct: 227 GGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQHC 286

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           G+   +    +G    +N L+  G+     +D     +AL      +GR
Sbjct: 287 GRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGR 335


>gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
 gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
          Length = 499

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 134/342 (39%), Gaps = 21/342 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + P     D   A Q    G  P   + G++ DSR++ P   F A+ G   DG  FI  A
Sbjct: 6   LRPSRAEADPGAADQARPAGADPD--IAGLTADSRAVRPGFVFAALPGVKADGRAFIADA 63

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGK 119
           + KGA  V+         GS ++ +      L A  ++A A    R   T++A+TG+ GK
Sbjct: 64  LAKGAVAVLAPEGTELPAGSTALLLTDPQPRL-AFARMAAAFHGGRQPETVVAVTGTNGK 122

Query: 120 TTTKEMLT-----IALSSIKKTYACIGSYNNHIGV------PLTLAR-MPVDVDFGIFEL 167
           T+T +        + L +       +     H         P++L R +    D GI  L
Sbjct: 123 TSTVQFAAQIWARMGLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHL 182

Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-F 224
            M  S  G  +F    V    A  T +   HL     +E    AKA +F+ +   G I  
Sbjct: 183 AMEASSHGLEQFRLDGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAV 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN D   F          G + + S+G +  A+ ++   +  +    + + + G+ + V 
Sbjct: 243 LNADSDDFHFFATICDERG-QRVLSYGLA-GAELRVTGVEPLAHGQRLSLTVLGRDVTVD 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               G   A N+L  LG+V     D   A+  L       GR
Sbjct: 301 LPLAGRFQAWNVLCALGLVIGSGGDATRALATLPALEGVPGR 342


>gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
 gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
          Length = 487

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 154/376 (40%), Gaps = 44/376 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+ +GA  V       + +    +P+
Sbjct: 17  LIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQGASVLPITEVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++G L++  +A R   + +    ++ +TG+ GKT+  ++L  AL ++ +    IG
Sbjct: 77  IPVKGLIGQLSQ--IAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQALDALGQRCGLIG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFEL--GMSHLGEIRFLTHLVRP--------HIA 187
           +        L   R+    P+ V   + +L  G +    +   +H +           IA
Sbjct: 135 TLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSHALEQGRVAALDFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +    +AKA++F        + +N DD F   L A++H       
Sbjct: 195 VMTNLSRDHLDYHGSMGAYEAAKAKLFAWSSLRARV-VNLDDDFGRRL-AEAHGQSRLIS 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           YS        F       C + ++ +       V  QG+   +    +G     NML  +
Sbjct: 253 YSLQDPAATLF-------CKQAAFNDDGVRAVIVTPQGEHA-LRSRLLGRFNLSNMLAAV 304

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L   +D  +K     H   GR +R    L  G   L+   Y   P +++    VL
Sbjct: 305 ATLLALDYPLDEILKVTPQLHGPIGRMQR----LGGGDKPLVVVDYAHTPDALE---KVL 357

Query: 361 SQISPHGEGRRIAVLG 376
             + PH  G+ + + G
Sbjct: 358 EALRPHAHGKLLCLFG 373


>gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
 gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
          Length = 497

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 40/335 (11%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138
           L IPV    DVL  L +        SKA +IA  G+ GKT+T  M   AL  + +  ++A
Sbjct: 105 LDIPVLKRSDVLALLMQ-------DSKALLIA--GTHGKTSTTSMTVAALQAAGLDPSFA 155

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G           +++  V+   G  ++ ++   E        +P +AVIT I P HL 
Sbjct: 156 VGG----------LMSKAGVNAHQGSGDVFVAEADESDASLLTYQPEVAVITNIEPDHL- 204

Query: 199 NFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           +F G +E   A  + F E ++  G + +  +D     L  ++   GI  +   G+   A 
Sbjct: 205 DFFGDDETYYAVFDAFAERIKDGGHLVVCAEDPHAAALGERAVERGINVLAYGGEDALAK 264

Query: 258 FQ-------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                    L  W      + +E  +   S+    H  G HMA N L  +     + AD+
Sbjct: 265 HPTLPVGAVLHGWTPVGGGARVEATVGSTSVRFELHQPGRHMALNALAAMVGGDCVGADL 324

Query: 311 DTAIKALSVFHPKEGRGKR--YRCALNQGFF--TLIDESYNANPASMKAAISVLSQ-ISP 365
               + L  F    G  +R  Y  ++ +G F    I + Y  +P  + A +    + ++ 
Sbjct: 325 GRMARGLGEF---TGVRRRFDYHGSIGEGPFVGARIYDDYAHHPTEVSAVLGAARELVTE 381

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            G G  IAV      +   +++F  + A  LSL +
Sbjct: 382 AGRGNVIAVF--QPHLYSRTRNFADEFAAALSLAD 414


>gi|238855721|ref|ZP_04646017.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260665507|ref|ZP_05866354.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934756|ref|ZP_06339996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|238831667|gb|EEQ24008.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260560775|gb|EEX26752.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301167|gb|EFA93471.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
          Length = 435

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 32/261 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L+    T   IG             R   D  F ++E  
Sbjct: 106 TSIGISGAHGKTSTTALLSHVLTEAAPTSYLIGDGE---------GRGVKDSRFFVYE-- 154

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F  I +  SA     +  +K   +F+ 
Sbjct: 155 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKK--ALFVW 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + ++ K         Y++G   + DFQ    K+ ++ +   V+  GK + E   
Sbjct: 208 GDDPRLQKIETKIPK------YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKT 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N L  +G+       ++   K L  +    G  KR     + G  T+ID+ 
Sbjct: 262 HLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTY----GGAKRRFSEKDFGDITVIDD- 316

Query: 346 YNANPASMKAAISVLSQISPH 366
           Y  +P  M+A I    Q  P+
Sbjct: 317 YAHHPTEMRATIQAAKQKFPN 337


>gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
 gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
          Length = 503

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 148/372 (39%), Gaps = 33/372 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82
           + G+S+DSR +     FFA+ G    G D I +A++ GA  ++ +          +   S
Sbjct: 27  ITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTDAQGAQIAAKELADSS 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTK----------EMLTIA 129
             +   +D  GA   LA+ A L   A   T+IA+TG+ GKT+            E+  + 
Sbjct: 87  AALIIAEDPRGA---LALTASLWFGAHPETMIAVTGTNGKTSVSTFARQIWIEMELAAVN 143

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPH 185
           L +     A      +    P+TL R        GI  + M   SH  + R L  +V   
Sbjct: 144 LGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGLDQRRLDGVVLA- 202

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T     HL      E    AK  +F   L + G   +N DDS    +   + + G+
Sbjct: 203 AAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGPEVVQIAESRGL 262

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +TI + G+  +A  +L   +  S    +    Q  S     + IG   A N+L+   +V 
Sbjct: 263 ETI-TVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQADNVLLAAALVI 321

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D + A   L       GR  ++      G    +D ++  +     A  + L  + 
Sbjct: 322 AAGGDPEEAFDTLPYLTTVRGR-MQHAATRRNGGSVFVDYAHTPD-----AVATALMAMR 375

Query: 365 PHGEGRRIAVLG 376
           PH  G+ IA++G
Sbjct: 376 PHVMGKLIAIVG 387


>gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
 gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
          Length = 493

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 152/380 (40%), Gaps = 49/380 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ + +DSR +     F AI G   DG  FI  A+Q+GA  V+       + G++ I  
Sbjct: 24  LVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEI-- 81

Query: 86  FGVDDV----LGALNKL--AVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137
             VDDV    L AL+K    +A  L +  T  +I +TG+ GKTT  +++   +  +    
Sbjct: 82  --VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKA 139

Query: 138 ACIGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           A +G+  N                + +  TL+ +  +       L +S  G I+     +
Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSL-AEQKAQYTALEVSSHGLIQGRVKAL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAK 238
                V T ++  HL     +EE A+AK  +F    + G   +N DD    ++ + L   
Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLN-N 256

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNM 296
           + A+ +K    F +S  A+           +S + ++  GK  E   H   IG   A N+
Sbjct: 257 ALAVSLKPTTEFSQSVYAN------HIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANL 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++    +  L       +       P  GR + ++   N          Y   P +++ A
Sbjct: 311 MLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVV----DYAHTPDALEKA 366

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L     H +G   A+ G
Sbjct: 367 LQAL---RVHCQGELWAIFG 383


>gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
 gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 152/360 (42%), Gaps = 37/360 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+    IAI+G+ GKTTT  M+   L +        G  +  + V   L  +  ++  G
Sbjct: 110 MRNYKQSIAISGTHGKTTTTSMVAEMLLA--------GDMDPTVSVGGILKDIGGNIRVG 161

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +L ++   E    FL+    P + V+  I   HL  F  +E+I  +     + L + G
Sbjct: 162 SPDLFVTEACEYTNSFLSFY--PTLEVVLNIEADHLDFFKDLEDIRHSFRLFAQKLPQDG 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
            + +N   S  E L+  +  L  + I +FG S ++ +  +   + + +  S+ ++ +QGK
Sbjct: 220 LLVIN---SGIENLQQITDGLKCR-IVTFGSSPDSHYTAQNITYDEFARPSY-DLIVQGK 274

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  V  G+ G H   N L  + +V  L    +  +  L  F    G  +R+      G 
Sbjct: 275 LVNRVSLGVTGEHNVYNSLAAIAVVMELGVGFEAIMAGLKNF---SGTDRRFEKKGEIGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  +KA ++               PH   R  A L    E   L+ +  
Sbjct: 332 VTIIDD-YAHHPQEIKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAET--LAAADE 388

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + LA++ +      + +S   +      L     VH+  + D +  FI  + ++GD+++ 
Sbjct: 389 VILADIYAARETDTLGVSSADIARKIQEL--GTPVHFIPSFDEIETFILENCMNGDLLIT 446


>gi|219558135|ref|ZP_03537211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
 gi|289570274|ref|ZP_06450501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis T17]
 gi|289544028|gb|EFD47676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis T17]
          Length = 163

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 37/157 (23%)

Query: 339 FTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            T+ID+ YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  + 
Sbjct: 8   VTVIDDVYNANPDSMRAGLQALAWIALQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 67

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-----------LVD- 443
              ++S + + G           RSI  +H+   ++G +   +++           + D 
Sbjct: 68  VRLDVSRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADG 118

Query: 444 -------------GDVVVVKSSNSCGFYRLINLLLEE 467
                        GDVV+VK+SN+ G   + + L+ +
Sbjct: 119 DAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 155


>gi|47565112|ref|ZP_00236155.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
 gi|47557898|gb|EAL16223.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
          Length = 436

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ SA  E+   L     I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALRVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis ATCC 23457]
 gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
           23457]
          Length = 488

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    ID  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYID--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|229105316|ref|ZP_04235965.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
 gi|228678242|gb|EEL32470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
          Length = 436

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++  A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFADINDVFGAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + I      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIAICHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
 gi|150273021|gb|EDN00178.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
          Length = 461

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GKTTT    T  +S + K          +IG PL LA  P   +    ++ +
Sbjct: 118 IIAVTGSDGKTTT----TTIISELLKKAGYNVYVGGNIGKPL-LAETP---NMEPDDMVV 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + +T  + P IAV+T +AP HL     +EE   AK  IF           N+D+
Sbjct: 170 LELSSFQLMTMDMSPDIAVVTNVAPNHLDVHKSMEEYVEAKENIFAHQSTENLAVFNWDN 229

Query: 230 SFFELLKAKS 239
                   K+
Sbjct: 230 EITRDFSKKA 239


>gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella schoenbuchensis R1]
          Length = 483

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR + P   F A++G   DG  ++  A+++GA ++V  TD   ++  + +PV 
Sbjct: 21  ITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIV--TDYNCALEGVYVPVL 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            V DV  +L   A          + A+TG+ GKT+
Sbjct: 79  RVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTS 113


>gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 499

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 28/274 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  M+  AL  I    +  IG     +G   T AR+     F + E  
Sbjct: 125 LVAVAGAHGKTSTSSMMAHALLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL +   P + VIT I P HL ++        A       L K GT+ L  D
Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSSAAFEQAFVNFTGRLRKGGTLVLCAD 235

Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281
           D+      E +  +  A G + I Y FG     D   QL + +    +   +V +     
Sbjct: 236 DAGVKRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295

Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +V H  +     G HM  N    LG   +L  D+   I AL  F    G  +R +    +
Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTF---SGADRRMQPVGER 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + D+ Y  +P  + A +     ++  G+GR
Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383


>gi|194337862|ref|YP_002019656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226722941|sp|B4SHE6|MURD_PELPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|194310339|gb|ACF45039.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 464

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 22/166 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           ++V ++ + +IP++         +++ +A+R   KA I+ ITG+ GKTTT   L  AL  
Sbjct: 80  EVVTTLQARNIPLY---------SEIELASRF-CKARIVGITGTDGKTTTS-TLVHALCE 128

Query: 133 IKKTYACIGSYN-NHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                    +Y+  +IGVP +   M +D+   D  + EL    L      +  ++P +AV
Sbjct: 129 EDGLRNGYRAYSVGNIGVPFS--SMVLDMKAGDIAVVELSSYQLER----SPTLKPEVAV 182

Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           I  I P HL  ++G ++  A+AK  I+       T+  N DD+   
Sbjct: 183 IMNITPDHLDRYAGELQGYAAAKFRIYANQGAGDTLIYNEDDALLR 228


>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
 gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 161/389 (41%), Gaps = 67/389 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84
           + GI  DSR ++  + F    G   DGH ++  A ++GA  VV +   D+  ++G  ++ 
Sbjct: 268 ITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEADKRGAVAVVASKEVDIEETLGCKALV 327

Query: 85  VFGVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG- 141
           +  V+D    L  LA A  +  SK   +I ITG+ GKTTT  +       +K  Y  +G 
Sbjct: 328 I--VEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGKTTTANL-------VKGMYEAMGL 378

Query: 142 --------SY----NNHIGVPLT----------LARM------PVDVDFGIFELGMSHLG 173
                   +Y    +N +  P T          +A+M       V ++     L +    
Sbjct: 379 RTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEAVVMEATSQGLALGRCD 438

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDS 230
           E+ F        IAV T +   HL      EE  +AKA++F  +   E+   + +N DD 
Sbjct: 439 EVDF-------DIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERHRKV-VNVDDP 490

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                 A+ +   +  +    ++KNAD    K++    ++ + V      +E+    +G 
Sbjct: 491 NAPFFIAQGNQ-EVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILEISSGLLGK 549

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYN 347
           H   N+L  + +   + A ++  ++ +       G     RC L    Q F  ++D  Y 
Sbjct: 550 HNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPG-----RCELIDEEQAFGVIVD--YA 602

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P ++   +  + ++ P    R I V+G
Sbjct: 603 HTPDALSRLLDSVRELRPK---RIITVIG 628


>gi|304404008|ref|ZP_07385670.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346986|gb|EFM12818.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
          Length = 489

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT   +   L +        G    +IG PL  A    D  
Sbjct: 106 AYLLSPAPIIGITGSNGKTTTTTWIGELLQAAGLRPIVAG----NIGTPLCEAAQEADAS 161

Query: 162 FGIF-ELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             +  EL    L G   F     RPH+A++  +   HL    G+E+  ++KA++F     
Sbjct: 162 HTLVAELSSFQLKGTTSF-----RPHVALLLNVVETHLDYHGGMEDYVASKAKLFANQTA 216

Query: 220 TGTIFLNYDDSF 231
                LN+DD+ 
Sbjct: 217 DDIAVLNWDDAI 228


>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
 gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
          Length = 519

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 31/238 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNT 72
           IG V +  ++ +S+DSR + P   FFA +G    GH +I  AV +GA  +V      V+ 
Sbjct: 32  IGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIVYDPVIPVSP 91

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL 130
            +   +   +IP+  + D+   L  +A    L+   +  ++ +TG+ GKT+    L  AL
Sbjct: 92  VIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTSVSHFLAQAL 151

Query: 131 SSIKKTYACIGSYN---------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGE 174
              +     IG+                 + I V   LA M      + + E+    LG+
Sbjct: 152 HRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVLEVSSHALGQ 211

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS 230
            R     V  +IA+ T ++  HL     +    +AK  +F   GL       +N DD+
Sbjct: 212 GRVSG--VAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQPGLRHA---VINGDDA 264


>gi|56476226|ref|YP_157815.1| UDP-N-acetylmuramate--L-alanine ligase [Aromatoleum aromaticum
           EbN1]
 gi|81358257|sp|Q5P6Z7|MURC_AZOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56312269|emb|CAI06914.1| UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)
           (UDP-N-acetylmuramoyl-L-alanine synthetase), gene: MURC
           OR RSC2843 OR RS00262 [Aromatoleum aromaticum EbN1]
          Length = 471

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 150/370 (40%), Gaps = 43/370 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASILAEGGMDPTF-VIGGKLNAAGANARLGK-------GDFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L+ P I+VIT I   H+  +      +  A  +  + L   G   L  
Sbjct: 160 EADESDASFL--LLTPVISVITNIDADHMDTYGHDFARLKQAFVDFLQHLPFYGVAVLCE 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +      L  K +  +G S++A+ +    +    +   +V     S+  +   
Sbjct: 218 DDPHVRSIM----PLVSKQVVRYGLSESANIRAENVRAEGGRMLFDVVRTNGSVSRLPIE 273

Query: 288 I---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALN------QG 337
           +   G H   N L  + + + +       IKAL+ F     R +RY   AL       QG
Sbjct: 274 LNLPGVHNVLNALAAIAVATEVQVPDAAIIKALAEFRGVGRRFQRYGEVALRDAEGTPQG 333

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             TLID+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 334 SCTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVLS 388

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  +L R+I V       + E +D +   + +++ DGDV
Sbjct: 389 TVDALLLAEVYAAGEAPVVAADGRSLARAIRVAGKVEPVFVEDIDEMPATVLAAVRDGDV 448

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 449 VITMGAGSIG 458


>gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
 gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
          Length = 521

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 162/408 (39%), Gaps = 60/408 (14%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR + P   F AI+G H DGH ++ HA++ GA  VVV+        +L +P+  V
Sbjct: 27  GLAYDSRQVRPGWLFVAIRGFHVDGHQYVDHALKAGAVAVVVDVRHWNGPTTLGVPLITV 86

Query: 89  DDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D   AL  LA       AA LR+    I ITG+ GK+TT ++++  L         I +
Sbjct: 87  ADSRVALAPLAANFYAHPAAHLRT----IGITGTKGKSTTTDLVSQVLEGGGLRTGMIST 142

Query: 143 YNNHIGV---PLTLARMPVDVD------FGIFELGMSHLGEIRFLTHLVRPH-------- 185
            +  IG    P T  +   +          + + G S+   +   +H + P+        
Sbjct: 143 VDFKIGARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSY-AVLESTSHALSPYWNRLGNVY 201

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF----EG-----------LEKTGTIFLNYD 228
             +AV   +   HL      E+  + KA +F    EG           +E+      N D
Sbjct: 202 FDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSEASCHQGDRVERPVWAIANAD 261

Query: 229 D---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           D    FF L  A S+A  +    +FG    AD +          S + V        +  
Sbjct: 262 DPNCQFF-LDAAPSYARRL----TFGVRAAADVRAHAVASGPSGSHLRVTTPWGEAALHL 316

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  L +       ++ AI AL        RG+     L Q F  ++D  
Sbjct: 317 QIPGSFNVSNALAALSVALSQGVPLERAITALEAV--PGIRGRMQPIHLGQPFDVIVD-- 372

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           Y  NP S +    VLS + P  +GR IAV G   E     +S   ++A
Sbjct: 373 YAHNPDSFE---QVLSMLRPLTKGRMIAVFGSAGERDRAKRSVQGEIA 417


>gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis
           12822]
 gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica
           RB50]
 gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis]
 gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica
           RB50]
          Length = 468

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 75/439 (17%)

Query: 53  GHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GAG +V +T +      V +  +  IPV     +L  L +L        
Sbjct: 56  GHD---RANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G 
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGQGE 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL  L  P +A++T I   H+  +   +  + SA  E  + L   G+ 
Sbjct: 156 YIVVEADESDASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSA 213

Query: 224 FLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            L  DD+   E++   S     + I ++G S +A  Q+      ++ + M   +Q +  +
Sbjct: 214 ILCADDANVREIMPFVS-----RPITTYGLSPDA--QVCAQDVQADGTRMRFTVQRRDRD 266

Query: 283 VVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYR--- 331
           VV   +       G H  +N L  + + + L  D D AI+ AL+ F   +G G+R+    
Sbjct: 267 VVLPALQVELNLPGLHNVRNALAAIAVATELGVD-DAAIREALAAF---KGVGRRFTQWG 322

Query: 332 -----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                 A   G FTL+D+ Y  +P  M A ++      P    RRI +            
Sbjct: 323 DLPVPAAHGGGTFTLVDD-YGHHPVEMAATLAAARGAWPQ---RRIVLAFQPHRYTRTRD 378

Query: 387 SFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFL 435
            F  D   VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L  
Sbjct: 379 CFE-DFVRVLGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQ 437

Query: 436 FIQSSLVDGDVVVVKSSNS 454
            I   + DGDVVVV  + S
Sbjct: 438 AILDFVRDGDVVVVMGAGS 456


>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
          Length = 499

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 33  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 91  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    ID  Y   P +++   +VL+ + P 
Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYID--YAHKPEALE---NVLTSVRPF 377

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 378 TTGRVIVVFG 387


>gi|116617821|ref|YP_818192.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|227432302|ref|ZP_03914295.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|122271978|sp|Q03YA3|MURC_LEUMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116096668|gb|ABJ61819.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|227351908|gb|EEJ42141.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 444

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 31/264 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+ T IA+ G+ GKT+T  +L   L +I  T   IG      GVP        +  F + 
Sbjct: 102 SQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGR-GVP--------NSQFFVV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   ++GIE++ SA A+    ++K   IF 
Sbjct: 153 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYTGIEDVTSAFADFANNVKK--AIFA 205

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             DD     LK  +       +Y +G   +  DF      + ++ S  +V  +GK + E 
Sbjct: 206 WGDDEHLRSLKPSAD------VYYYGVNPERDDFVATNIHKSTQGSHFDVVFRGKDLGEF 259

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342
                G H   N L  + +  +   D+D   + L  +     +G + R +  Q    T+I
Sbjct: 260 AVPLFGQHGILNALAVIAVSYMEEVDLDLIRQYLLTY-----QGVKRRFSEKQIADITVI 314

Query: 343 DESYNANPASMKAAISVLSQISPH 366
           D+ Y  +P  + A +    Q  P+
Sbjct: 315 DD-YAHHPTEITATLDAARQKYPN 337


>gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 91/225 (40%), Gaps = 23/225 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +  D+R +     F AIKG   DGH FI  A++KGA  +VV  +     G   + + 
Sbjct: 25  VSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVVQEETDDIQG---VTIV 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V++   AL  LA        S   +I +TG+ GKTT   M+       K     IG+  
Sbjct: 82  RVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIFRDQKDRTGLIGTMY 141

Query: 145 NHIG---------VP--LTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             IG          P  LTL +   ++   +     + +S +  I+     +    AV T
Sbjct: 142 RRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIALIQGRVWGIDVDTAVFT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKT----GTIFLNYDDSF 231
                HL     + E A AK+ +F  L  T     T  +N DD  
Sbjct: 202 NFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEM 246


>gi|281492643|ref|YP_003354623.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376307|gb|ADA65798.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 443

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  ML   +S+I  T   IG             R     ++ +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGIEGSEYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P   ++T I   H   F GIE++ SA  +    ++K   IF   +
Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L AK+       IY +G   N D++     + +  S  +   +G+ +   V   
Sbjct: 208 DVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D+      L  F     RG + R    +   T+I + + 
Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTEVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381
            +P  ++A +    Q            PH   R IA   +  E+
Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360


>gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
 gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
          Length = 811

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 30/274 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGV 149
           L  +++  + A L  + T I ++GS GKTT   ++T    + KK  +YA IG  N+    
Sbjct: 88  LPMMHRAELLAFLMQEHTSILVSGSHGKTTVTSLITAIFQTAKKDPSYA-IGGLNS---- 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIAS 208
            L+L     + ++ I E   S  G +++      P IAV+T +   HLSNF G  E++A 
Sbjct: 143 -LSLNGYSGNSEYFIAEADESD-GSLKYY----HPKIAVVTNLDNEHLSNFEGNKEKLAL 196

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQC 266
              E    ++     F N D    +  +  KS+       +Y +   ++       W+  
Sbjct: 197 TIEEFARKVDNPNLCFYNGDCQELKGRISGKSYGFSQDCHLYIYSHRQDG------WRSV 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S++E   Q   + +    IG H   N  + +GI   L  D ++  +AL  F   + R
Sbjct: 251 FSLSFLEKDYQDIDLNL----IGKHNVANAAVAMGIALTLGIDEESIREALKNFPGVQRR 306

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +R   +  + F  L  E Y  +P+ +   +  L
Sbjct: 307 MERKNTS--ETFLFL--EDYAHHPSEISCTLGGL 336


>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
 gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase; AltName: Full=D-lysine-adding enzyme; AltName:
           Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
          Length = 490

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 145/368 (39%), Gaps = 38/368 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S  S  +   + F   +G  +D H+ I   ++KGA  VVV  ++      L  P  
Sbjct: 25  ITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEREI-----DLDFPYI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGK-------------TTTKEMLTIALSSI 133
            V D      K+A          ++    +                T+  E  ++  +++
Sbjct: 80  QVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAV 139

Query: 134 KKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAV 188
           K+      SY + I  P     L+ M  + + G   F L +S    ++     VR  + +
Sbjct: 140 KRILG--NSYYDDITTPDAITILSAMKENREGGGKFFALEVSSHALVQQRVEGVRFDVGI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T I+  HL      E    AK  +F+ L+  G   LN  +S  +    KS  +      
Sbjct: 198 FTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--ESLADAFNRKSRKI------ 249

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG SKNAD++L   +   E +   ++     ++V    IG   A N    +  +  L  
Sbjct: 250 TFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIGDFNAYNAAAAIAALHQLGY 309

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      +L  F   EGR +  R A   G   ++D  +  +P +++  +  + +IS   +
Sbjct: 310 DPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKIS---Q 364

Query: 369 GRRIAVLG 376
           GR I V G
Sbjct: 365 GRVIVVFG 372


>gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
 gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
          Length = 476

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 57/337 (16%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IAI G+ GKTTT  M+ +  A + +  T+   G       N ++G    L     + D  
Sbjct: 121 IAIAGTHGKTTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCSRYLIAEADESDAS 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P ++V+T I P H+  + G  EE+          L   G 
Sbjct: 181 FLHL---------------QPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGL 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             +  DD    +L   S  +G + + ++G S  AD+++  ++Q   Q  +  V   G+ +
Sbjct: 226 SVMCADDP---VLMELSSQVG-RQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERI 281

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336
           +V+ +  G H A N    L +      + +  + AL+ F   +G G+R+   L Q     
Sbjct: 282 DVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEF---QGAGRRFD-QLGQFIRPN 337

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  LSQ
Sbjct: 338 GKVMLVDD-YGHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 394

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              +D+  +L +Y      ++G    A   +L RSI 
Sbjct: 395 ---VDVLIMLDVYAAGEQAIAG----ADSRSLCRSIR 424


>gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
 gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
          Length = 495

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLSIPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G       +PV
Sbjct: 30  LELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIVQGANLVLAQADAEHPNGVSEYRQQVPV 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + D+   L+++A       +  +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 90  IYLADLGTHLSEMAGRLYGDHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149


>gi|306827028|ref|ZP_07460326.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430774|gb|EFM33785.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
          Length = 438

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 96  SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 151

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 152 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 207

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 208 LNANQEISATLAKTTQA----TVIPFSTQKVVD 236


>gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
           M5-90]
          Length = 490

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    ID  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYID--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 457

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 110 IIAITGSVGKTTT----KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++++TGS GKTTT    ++ML   LS I K       Y  +IGV  T     +  D    
Sbjct: 114 LVSVTGSNGKTTTTTLIQKMLDAGLSHIAK-------YAGNIGVSFTKTAQELSAD---- 162

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +  ++ L   + L T  + PHIAVIT I   HL      E   +AK  I     K   + 
Sbjct: 163 DYLVTELSSFQLLGTPDLHPHIAVITNIFANHLDYHKTRENYINAKLNITRNQTKDDYLI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           +N+D   ++ +  +S A  I      GKSK+  +
Sbjct: 223 MNWDRDEWQEIARRSSAT-IVPFSRLGKSKDGAY 255


>gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 476

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 173/438 (39%), Gaps = 82/438 (18%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H+ +   GA +VV+++ +      V +     IPV     +L  L       R R  
Sbjct: 67  FIGHSAENIIGASVVVISSAIHGDNPEVMAAKKARIPVIQRAQMLAEL------MRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IA+ G+ GKTTT  M+++  A + +  T+   G       N H+G    L     + 
Sbjct: 121 ---IAVAGTHGKTTTTAMVSMIYAQAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADES 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D     L               +P I+++T I P H+  + G  +E+          L  
Sbjct: 178 DASFLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278
            G   L  DD+    L  +      + + ++G S+NAD+++  ++Q   Q  +  +   G
Sbjct: 223 YGLAVLCADDADLMSLVPQVG----RQVITYGFSENADYRIEDYQQTGFQGHYTVICPNG 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-- 336
           + ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+   L Q  
Sbjct: 279 ERIDVLLNVPGRHNALNATAALVVAKEEGIKNEAILAALADF---QGAGRRFD-QLGQFI 334

Query: 337 ---GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
              G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  
Sbjct: 335 RPNGKVMLVDD-YGHHPTEVGVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQV-- 391

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLF 436
           LSQ   +D   +L +Y      + G    A   AL RSI        +  S+T   L   
Sbjct: 392 LSQ---VDALIMLDVYPAGESPIVG----ADSKALCRSIRNLGKVDPILVSDTAQ-LGDV 443

Query: 437 IQSSLVDGDVVVVKSSNS 454
           I   + DGD+++ + + S
Sbjct: 444 IDQIIQDGDLILAQGAGS 461


>gi|21910712|ref|NP_664980.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS315]
 gi|28895598|ref|NP_801948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes SSI-1]
 gi|94990778|ref|YP_598878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10270]
 gi|47606755|sp|Q879A1|MURD_STRP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76363881|sp|P0C0D7|MURD_STRPY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595695|sp|Q1JG10|MURD_STRPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3090871|gb|AAC38404.1| uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase
           [Streptococcus pyogenes]
 gi|21904915|gb|AAM79783.1| putative uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate
           ligase [Streptococcus pyogenes MGAS315]
 gi|28810847|dbj|BAC63781.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptococcus pyogenes SSI-1]
 gi|94544286|gb|ABF34334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10270]
          Length = 452

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTQA----TVIPFSTQKVVD 250


>gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
 gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
          Length = 483

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 149/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  Q
Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P    RR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATVAAARGAFPD---RRLVLAFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  +L R++ V       + E ++ +   I  +  D D
Sbjct: 386 GTVDGLLLAEVYSAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|161723236|ref|NP_268197.2| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|25014077|sp|Q9CE10|MURC_LACLA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|326407576|gb|ADZ64647.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 443

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  ML   +S+I  T   IG             R     ++ +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGIEGSEYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P   ++T I   H   F GIE++ SA  +    ++K   IF   +
Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L AK+       IY +G   N D++     + +  S  +   +G+ +   V   
Sbjct: 208 DVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D+      L  F     RG + R    +   T+I + + 
Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTEVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381
            +P  ++A +    Q            PH   R IA   +  E+
Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360


>gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M04-240196]
          Length = 445

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRDD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 486

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++      F  IKG   DGH++I  A+Q GA LVVV+     S     I   
Sbjct: 24  ITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQNGACLVVVDEFFDTSKIEGKIDYI 83

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++            +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 84  KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIK 143

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           N IG     A+   P   D           G+  + M   SH  E+ F  +     + V 
Sbjct: 144 NMIGSREIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   +AK ++F G+ K   +  N DD +      K          +
Sbjct: 203 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDMW-----GKRIIEMYPDSVT 254

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  +A    R  K    ++  E+   G+  E+  +  G     N L        L   
Sbjct: 255 YAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSLAASACCISLGIK 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D   K L       GR +      NQ F  +ID  Y   P  +   +  +++++   +G
Sbjct: 315 LDDIKKGLENLKAVPGRFEIVES--NQKFTVVID--YAHTPDGLLNLMKTVNEVT---DG 367

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 368 RKVLLFG 374


>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
 gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
          Length = 487

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     P+
Sbjct: 17  LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCCIVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T ++  HL     +E  A+AKA++F   GL       +N DD F   L  +
Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290
                + T YS   S         +  C E  + +  ++  +  V  HG        +G 
Sbjct: 245 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  +G +  L   +   ++ L       GR +R    L  G   L+   Y   P
Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++    VL  + PH   R + + G
Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373


>gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
 gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
          Length = 445

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 71/180 (39%), Gaps = 30/180 (16%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251


>gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
 gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
          Length = 493

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 47/372 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+ + +DSR +     F AI G   DG  FI  A+++GA  V+       + G++ I  
Sbjct: 24  LVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI-- 81

Query: 86  FGVDDV----LGALNKL--AVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137
             VDDV    L AL+K    +A  L +  T  +I +TG+ GKTT  +++   +  +    
Sbjct: 82  --VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKA 139

Query: 138 ACIGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           A +G+  N                + +  TL+ +  +       L +S  G I+     +
Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSL-AEQKAQYTALEVSSHGLIQGRVKAL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAK 238
                V T ++  HL     +EE A+AK  +F    + G   +N DD    ++ + L   
Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLN-N 256

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNM 296
           + A+ +K    F +S  A+           +S + ++  GK  E   H   IG   A N+
Sbjct: 257 ALAVSLKPTTEFSQSVYAN------HIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANL 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++    +  L       +       P  GR + ++   N     ++D  Y   P +++ A
Sbjct: 311 MLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKV--VVD--YAHTPDALEKA 366

Query: 357 ISVLSQISPHGE 368
           +  L ++  HGE
Sbjct: 367 LQAL-RVHCHGE 377


>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 33  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 91  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 378 TTGRVIVVFG 387


>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 488

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 164/415 (39%), Gaps = 48/415 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL++ +Q   I       ++ I  DSR       + A+KG   DGH FI  AV +
Sbjct: 2   IMNLEDLIKKVQILDILGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFIDAAVAQ 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GA  VV N     +I +  I    V+D   AL +LA         K  +I ITG+ GKT+
Sbjct: 62  GAAAVVCNA-FPENIDT-DITYIKVEDSAKALGQLASGFFGNPSEKLNLIGITGTNGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VP--------LTLARMPVDV-----DFGIF 165
              +L      +    A I +    I    +P        +TL ++  +      ++   
Sbjct: 120 VTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEAVEAGCEYAFM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +   IA  T I+  HL       E    K   F+GL        
Sbjct: 180 EVSSHGIHQKR--TERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGLNPDAVAIT 237

Query: 226 NYDDSFFELL----KAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           N DD   +++    KA   +  +KT+  + GK+   DF           + M +   GK 
Sbjct: 238 NLDDKNGKIMLQNTKATRKSYALKTMADYHGKTTETDF-----------NGMLLNFDGK- 285

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E      G     N+L+   I        D  +KA+S+    +GR +  +   + G F 
Sbjct: 286 -EFWTTLTGRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKS--DGGIFF 342

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +ID  Y   P ++   +  +++I    E R I V G  C  GE  Q+   ++ ++
Sbjct: 343 VID--YAHTPDALDNILDSINEIRTKNE-RLITVFG--C-GGERDQTKRPEMGKI 391


>gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 483

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 149/371 (40%), Gaps = 47/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280
           DD +  E+L   S     K +  +G +++A  Q+R     +    ME     QL G +  
Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            + +  +  G H  QN L  + I + L    +  +KAL+ F+    R +RY     A  Q
Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M A ++      P    RR+ +             F  D  +VL
Sbjct: 331 GRFTLIDD-YGHHPVEMAATVAAARGAFPD---RRLVLAFQPHRFTRTRDCFE-DFIKVL 385

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +   ++ V+ +G   +   D  +L R++ V       + E ++ +   I  +  D D
Sbjct: 386 GTVDGLLLAEVYSAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 446 VVITMGAGSIG 456


>gi|319639047|ref|ZP_07993804.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
 gi|317399625|gb|EFV80289.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
          Length = 469

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K       E
Sbjct: 219 DSEHVRAILPKIS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  +VL+ 
Sbjct: 332 AALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV
Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   + S    R+ + L+E
Sbjct: 448 LNMGAGSIN--RVPSALVE 464


>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 495

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 46/274 (16%)

Query: 19  IGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           + ++PQ  V G        ++ DSR++     F  +KG   DGH F+  A +KGA   +V
Sbjct: 9   LALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAVAALV 68

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKE 124
             D+ A +    + +  V D   A+  +          +LR    +I +TG+ GKTT+  
Sbjct: 69  E-DVPAEVPQ-GVTLIKVADTREAMELVTPYFYDYPGRKLR----MIGVTGTNGKTTSTN 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168
           ++ + L         IG+ N  I   +T                 A      D+ + E+ 
Sbjct: 123 IIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----GLEKTGTIF 224
              L   R     +    AV+T I   HL     +E    AK+ +FE    G +      
Sbjct: 183 SHALALKRVAG--IEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            N DD    +++ ++ A     + ++G+  + D 
Sbjct: 241 FNMDDPSSAIIRERTKA----NVLTYGEGHDNDI 270


>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 534

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 157/413 (38%), Gaps = 70/413 (16%)

Query: 9   DLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           D+L+ I G ++   P G     V G+ +DSR +   + F A  G    G  FI  AV +G
Sbjct: 22  DVLREIPGAALS--PAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIPEAVARG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  V+V     A   +L      V DV  AL + A         T  ++ ITG+ GKTTT
Sbjct: 80  ARAVIVARGSAAD--TLGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVGITGTNGKTTT 137

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG-EIRFL--- 178
             ++           ACI       G+  TL        FG  ++  SH   E   L   
Sbjct: 138 AHLV----------QACIDRCGGQAGIVGTLGYR-----FGDLDVHASHTSPEADELARV 182

Query: 179 ---------THL----------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                    THL                VR  IAV T +   HL     +E  A+AKA +
Sbjct: 183 AAAMVARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARL 242

Query: 214 FEGLEKTGTIFLNYDDSF----FELL------KAKSHALGIKTIYSFGKSKNADFQLRKW 263
           F  L   G   +N DD F     E+L      +  +  L   +         A+    + 
Sbjct: 243 FVDL-GPGAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVEL 301

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              +  +++  +     + +  H +G H A N+L  L +  +L  DV  A  ALS   P 
Sbjct: 302 AHSASGTFIRARTPAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALS--SPI 359

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +  G+  RC        ++   Y   P ++     VL+ +   G GR + V G
Sbjct: 360 QVAGRLERCDAPGADDVIVLVDYAHTPDALA---RVLASVRALGGGRVLCVFG 409


>gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336]
 gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336]
          Length = 476

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 57/337 (16%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IAI G+ GKTTT  M+ +  A + +  T+   G       N ++G    L     + D  
Sbjct: 121 IAIAGTHGKTTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCSRYLIAEADESDAS 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P ++V+T I P H+  + G  EE+          L   G 
Sbjct: 181 FLHL---------------QPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGL 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             +  DD    +L   S  +G + + ++G S  AD+++  ++Q   Q  +  V   G+ +
Sbjct: 226 SVMCADDP---VLMELSSQVG-RQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERI 281

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336
           +V+ +  G H A N    L +      + +  + AL+ F   +G G+R+   L Q     
Sbjct: 282 DVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEF---QGAGRRFD-QLGQFIRPN 337

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  LSQ
Sbjct: 338 GKVMLVDD-YGHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 394

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              +D+  +L +Y      ++G    A   +L RSI 
Sbjct: 395 ---VDVLIMLDVYAAGEQAIAG----ADSRSLCRSIR 424


>gi|284031631|ref|YP_003381562.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
 gi|283810924|gb|ADB32763.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
          Length = 953

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156
           S+  I+A+TG+ GKTTT  M++     + +      +    I   L +         ARM
Sbjct: 516 SRIPIVAVTGTNGKTTTARMISHVFKGLGRKVGMTSTDGVVIDERLVIRADASGPKSARM 575

Query: 157 PVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
            +    VDF +FE+     G +R      R  +AV+  I P H  L     +E++A  KA
Sbjct: 576 VLQNPRVDFAVFEVARG--GILREGLGYERNDVAVVLNIQPDHLGLRGVDTLEQLADVKA 633

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + E + + G   LN DD     ++ K
Sbjct: 634 VLVEAVPRDGFAVLNADDPLVRKMRRK 660


>gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           prowazekii str. Madrid E]
 gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia
           prowazekii]
 gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia
           prowazekii Rp22]
          Length = 445

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  +++  L+S    Y   G    +IGVP   A+   +    + EL   
Sbjct: 107 IAITGTNGKSTTTALISHILNSNGLDYPVAG----NIGVPALQAKASNEG--YVLELSSF 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  ++  T      +AV+  I P HL  +  + +  +AKA+IF+ ++K     +N D+ 
Sbjct: 161 QLDLVKSFT----VKVAVLLNITPDHLDRYQDMNDYIAAKAKIFDRMDKDSYAVINIDND 216

Query: 231 F 231
           +
Sbjct: 217 Y 217


>gi|296327766|ref|ZP_06870305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155113|gb|EFG95891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 428

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 172/424 (40%), Gaps = 56/424 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H +G +F +    K  G+     D V  +    I +  +D++ 
Sbjct: 28  DKKAMTSEEAL-----NHLEGLEFFI----KSPGIPY--NDFVKEVQKRGIKI--LDEIE 74

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   L++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 75  IAYNYM-IEKGLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKATYAGNIGRSLS 127

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P I++I  I P H+  +   +E  + K 
Sbjct: 128 EVLLKEKDLDFISLELSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNIKF 183

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +   +      N DD   E ++ ++  +  K I S  K K AD  +      +++ +
Sbjct: 184 NITKNQTEDLYFIENIDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVE-----NDKIY 234

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +        ++   GI  H  +N L  +    IL  D +     L +  P E R + + 
Sbjct: 235 HDKDDIIDVDKLSLKGI--HNLENTLFMVATAEILKLDREKLKGFLMIATPLEHRTELF- 291

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N G    I++S   N  S K AI              I + G   +  +L+      
Sbjct: 292 --FNYGKLKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP----- 336

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           LAE++   NI  V+L G     +++ L +   V Y +      + I++SL D      K 
Sbjct: 337 LAEMIK-ENIKEVYLIGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMKKRFTKD 392

Query: 452 SNSC 455
           S+  
Sbjct: 393 SDEV 396


>gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Herminiimonas arsenicoxydans]
 gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 145/377 (38%), Gaps = 44/377 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSRSI   + F A  G   DG  +I  A+++GA  ++ +          ++P   +D++ 
Sbjct: 28  DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEWNVPHLAIDNLR 87

Query: 93  GALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS-------Y 143
                +A A       T+  +A+TG+ GKT+  + L  ALS + +  A IG+       +
Sbjct: 88  ACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVGIFKH 147

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL------------VRPHIAVITT 191
             H    +T    P  V      + M H G                    V   +A+ T 
Sbjct: 148 GEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMALFTN 207

Query: 192 IAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS----FFELLKAKSHALGIK 245
               HL     +    +AK  +F+  GL       +N DD+      E LK +   +GI 
Sbjct: 208 FTRDHLDYHGDMAAYEAAKTMLFDWPGLRHA---VVNLDDALGVRLVERLKRRQSGIGI- 263

Query: 246 TIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGI 302
           T Y+      AD  L       S  +    QL  K     V    +G     N+L  +GI
Sbjct: 264 TGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGIIGI 323

Query: 303 V---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    I  ++V  AI+AL+        G+  +    +    +ID  Y   P +++  ++ 
Sbjct: 324 LLAKGIALSNVVAAIEALTSV-----PGRMQQLGGAEAPLVVID--YAHTPDALEKTLAT 376

Query: 360 LSQISPHGEGRRIAVLG 376
           L +++    G    V G
Sbjct: 377 LREVANERGGALWCVFG 393


>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
          Length = 485

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     P+
Sbjct: 15  LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 74

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 132

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 133 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 189

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T ++  HL     +E  A+AKA++F   GL       +N DD F   L  +
Sbjct: 190 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290
                + T YS   S         +  C E  + +  ++  +  V  HG        +G 
Sbjct: 243 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  +G +  L   +   ++ L       GR +R    L  G   L+   Y   P
Sbjct: 293 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++    VL  + PH   R + + G
Sbjct: 349 DALE---KVLEALRPHAAARLLCLFG 371


>gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
 gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
          Length = 487

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 143/369 (38%), Gaps = 37/369 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83
           V+ +  DSR +   + F A++G   DGH FI  AV  GA +VV      D+   I  + +
Sbjct: 24  VHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAKIVVCEQLPQDLSGHITYIQV 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              G    L A N         +K  ++ +TG+ GKTT   +L      +      I + 
Sbjct: 84  ENAGFALGLIAAN---FYDNPSAKLKLVGVTGTNGKTTVATLLYKLFVELGFRVGLISTV 140

Query: 144 NNHIGV-----------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N +             P++L  +  ++     D+   E+    + + R +T L      
Sbjct: 141 QNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFMEVSSHAVAQHR-ITGLSFVG-G 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL      +    AK   F+ L K+    +N DD    ++   + A      
Sbjct: 199 VFTNLTHDHLDFHKTFDAYLKAKKAFFDMLPKSAFALVNIDDKNGSVMLQNTDAYK---- 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G    ADF+ R      E  +  + +Q  + EV    +G   A N+L    +  +L 
Sbjct: 255 KTYGLKNIADFKGR----IVESHFNGMLMQIDTREVWIRLVGAFNAYNLLAVYSVAILLE 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D    +  LS     EGR          G   ++D  Y   P +++  +  +  +  + 
Sbjct: 311 QDTTRVLTILSRLTGAEGRFDTLVSG--NGVIGIVD--YAHTPDAVENVLRTIVDLRKNK 366

Query: 368 EGRRIAVLG 376
           E + IAVLG
Sbjct: 367 E-QIIAVLG 374


>gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M13399]
 gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240013]
          Length = 445

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
 gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
          Length = 501

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 63/375 (16%)

Query: 11  LQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L+ I G S   VP+    ++ ++ DSR+  P  AF AI G   DG  F+  A+  GA LV
Sbjct: 8   LEKILGAS---VPESVDGIDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASLV 64

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V   D+  +      P   V D  V  A    A A       T+  ITG+ GKTT+  +L
Sbjct: 65  VAERDVEGA------PTVVVPDARVALAALATATAGHPSHDVTVYGITGTNGKTTSSYVL 118

Query: 127 TIALSSI-----------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
              LS+                  ++    + +      V   LARM         + G+
Sbjct: 119 HGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARM--------RDAGV 170

Query: 170 SHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            H+  +   +H +  H         A+ T +   HL     +E+    K  +FE  +  G
Sbjct: 171 EHV-VLETSSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFEWTD--G 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---------WKQCSEQSWM 272
               N DD++   + A+     +     FG S+NAD+++ K         +   + + ++
Sbjct: 228 PKLTNVDDAYGARIVAE-----VPGTLGFGVSENADYRITKVHPSDGGTAFTLTTPERFL 282

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +     +E+    +G +   N+     I   +   +DT + A++      GR +R   
Sbjct: 283 DGRDAPGVIELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPA 342

Query: 333 ALNQGFFTLIDESYN 347
           A  +GF  ++D ++ 
Sbjct: 343 ATAKGFEVVVDYAHT 357


>gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
 gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
          Length = 485

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +        +    
Sbjct: 22  DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEM---KHKVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +D++   L  +A       + K  II +TG+ GKT++  M+   +     T   IG+   
Sbjct: 79  IDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR--IGTIEY 136

Query: 146 HIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            IG  V   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLEIGRVDVLDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+       N DD +
Sbjct: 195 TNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKY 236


>gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 414

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 140/348 (40%), Gaps = 58/348 (16%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA +IA+TGS GK+T   ML   L ++      +G    +IG P  L ++    D+ +
Sbjct: 94  NTKAKMIAVTGSNGKSTIVTMLDFVLRNLGYKSILVG----NIGTP-PLNKIGEKFDYCV 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    +     L + V   +  +  ++P HL  +   EE   +K      L K    F
Sbjct: 149 VEVSSFQID----LFNSVEFDLGCVVNVSPDHLDRYKNYEEYKQSKL----NLAKFSKDF 200

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             YD           H  GIK           ++Q+ +     + +        K +++ 
Sbjct: 201 FVYD----------VHNTGIKYA--------GEYQIVRGSIYKDTT--------KLLDIT 234

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTL 341
              + G H  +N+++ L I      D+  A+ A+  F     +G ++RC +  N    T 
Sbjct: 235 ETNLFGEHNLENIIVVLNIFDRFGIDISKAVAAIKKF-----KGLKHRCEIVKNIAGVTY 289

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +  AA++ ++          I +LG + + G+ S      +++ L+ Y +
Sbjct: 290 INDSKGTNVGATIAALNSIT-----SSKNIILLLGGVAKGGDFSL-----MSKSLAKY-V 338

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +V+L G     +++ +           M   F        D ++V++
Sbjct: 339 KYVYLYGQDKEYIENYIKDLCQYQICNDMKDAFRLASQKAQDSEIVLL 386


>gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
          Length = 467

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 182/439 (41%), Gaps = 69/439 (15%)

Query: 32  IDSRSIAP-QEAFFAIKGPHYDGH--DFILHAVQKGAGLVVVN------TDMVASIGSLS 82
           ID+R I P QE   +    H  G   +++L+A      LVV N      T  +  + +  
Sbjct: 65  IDTREIPPGQEQLSSDVALHRGGWNLEWLLNA-----DLVVTNPGIALATPEIQQVLAAG 119

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV G  ++                  +IAITGS GK+T  + L+  L++     A +G 
Sbjct: 120 IPVVGDIELFA----------WHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG- 167

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +IGVP  L  +  DV+  + EL    L      T  ++   A    ++  H+  + G
Sbjct: 168 --GNIGVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQG 220

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +   AK  IF+  E   T  +N DD+         HA  ++ + +FG  + A F L +
Sbjct: 221 MGDYRQAKLRIFDHAE---TAVVNADDT----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ 272

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             Q  E  +   +      E+    +G H   N+L  L ++     +   A+ AL     
Sbjct: 273 -HQGREYLFARDEAVMACAELSL--VGRHNVTNVLTVLALLDSAGVNFRLALDAL----- 324

Query: 323 KEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           K   G  +RC   A N G    +++S   N AS  AA+S L       EG+   ++G + 
Sbjct: 325 KSYTGLTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVG 378

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +  + +      LA VL+   +    L  F V      +P      + ++M+ +   I+ 
Sbjct: 379 KGADFTP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRP 429

Query: 440 SLVDGDVVVVKSSNSCGFY 458
            L  GD+V++  S +C  +
Sbjct: 430 QLKSGDMVLL--SPACASF 446


>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
 gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 487

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     P+
Sbjct: 17  LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T ++  HL     +E  A+AKA++F   GL       +N DD F   L  +
Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290
                + T YS   S         +  C E  + +  ++  +  V  HG        +G 
Sbjct: 245 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  +G +  L   +   ++ L       GR +R    L  G   L+   Y   P
Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++    VL  + PH   R + + G
Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373


>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 485

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 25/222 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +        +    
Sbjct: 22  DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEM---KHKVSYVL 78

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +D++   L  +A       + K  II +TG+ GKT++  M+   +     T   IG+   
Sbjct: 79  IDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR--IGTIEY 136

Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
            IG  +   +   P  +D   IF+  +    +I ++   V  H              A+ 
Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLEIGRVDVLDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           T +   HL     +E    AK ++F  L+       N DD +
Sbjct: 195 TNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKY 236


>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
 gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
          Length = 496

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 142/378 (37%), Gaps = 54/378 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR++     F A+ G   DGH+++  A++ GA  V+V+  +  S     + V  V+
Sbjct: 29  VTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSKPVDVS---GDVCVITVE 85

Query: 90  DVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIG----- 141
           D   A+  + V       A    +I +TG+ GKTTT  M+   L +       IG     
Sbjct: 86  DTRAAM-MVCVPYFFDYPANSMRMIGVTGTNGKTTTSHMIRHILKAQGHKVGVIGTVHIM 144

Query: 142 ----SYNNHIGVPLTLARMPV-------DVDFGIFELGMSH---LGEIRFLTHLVRPHIA 187
               SY  H   P  +    +        V + + E+  SH   LG +  + +      A
Sbjct: 145 IGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVS-SHALALGRVSGVEY----DTA 199

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKAKSHA 241
           V T +   HL      E   +AK ++FE + K   +       +N DD++   +  K+ A
Sbjct: 200 VFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRVVEKTTA 259

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I ++    +            + S   V   G    V  +  G     N L  +G
Sbjct: 260 ----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAIG 315

Query: 302 ---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +  I   D+D A+K  S        G+       Q F  ++D  Y   P  ++  + 
Sbjct: 316 ACLLEGISMEDIDKALKTFSAV-----PGRFELIEEGQPFAVVVD--YAHTPDGLENILQ 368

Query: 359 VLSQISPHGEGRRIAVLG 376
               I    E R I V G
Sbjct: 369 TAKAIQ---ENRIIVVFG 383


>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 33  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 91  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 378 TTGRVIVVFG 387


>gi|331013841|gb|EGH93897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 92

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +ID++YNANPAS+ AA+ +L+  S    GR + VLGD+ E+GE ++  H D+ 
Sbjct: 16  VIDDTYNANPASINAAVDILTGFS----GRTVLVLGDIGELGEWAEQGHRDVG 64


>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAb1]
 gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 487

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     P+
Sbjct: 17  LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T ++  HL     +E  A+AKA++F   GL       +N DD F   L  +
Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290
                + T YS   S         +  C E  + +  ++  +  V  HG        +G 
Sbjct: 245 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  +G +  L   +   ++ L       GR +R    L  G   L+   Y   P
Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++    VL  + PH   R + + G
Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373


>gi|56421350|ref|YP_148668.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261418169|ref|YP_003251851.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. Y412MC61]
 gi|297529026|ref|YP_003670301.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|319767871|ref|YP_004133372.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
 gi|68565686|sp|Q5KW36|MURC_GEOKA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56381192|dbj|BAD77100.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261374626|gb|ACX77369.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61]
 gi|297252278|gb|ADI25724.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|317112737|gb|ADU95229.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
          Length = 434

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 132/332 (39%), Gaps = 51/332 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +PV      LG         +L  K T IA+TGS GKTTT  +L   +     T   
Sbjct: 82  QLGVPVIRYHRFLG---------QLAGKFTSIAVTGSHGKTTTTGLLAHVMQGAHPTSYL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG      G P +         + +FE       E R  FL++   P  A++T I   H 
Sbjct: 133 IGDGTGK-GEPGS--------KYFVFE-----ACEYRRHFLSYF--PDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F+ ++++ SA  ++   ++K   I    DD +   ++AK   L     Y FG+    D
Sbjct: 177 DYFANVDDVFSAFQQMANQVKK--AIVACGDDPYLPNIQAKVPIL----FYGFGEEN--D 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           FQ R   + +E    +V ++     S  +     G H   N L  + +      D  T  
Sbjct: 229 FQARNIVKTTEGMAFDVFVRNTFFASFAIPR--FGTHNVLNALAVIALCHYEGVDAGTIA 286

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K L  F   +G  +R+      G   LID+ Y  +P  + A +    Q  P   GR +  
Sbjct: 287 KRLQTF---QGVKRRF-SEKTVGRQVLIDD-YAHHPREITATLEAARQKYP---GREVVA 338

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         +Q+F  + AE  SL    HV+L
Sbjct: 339 IFQPHTYTR-TQTFLREFAE--SLLQADHVYL 367


>gi|12725089|gb|AAK06138.1|AE006433_8 UDP-N-acetylmuramate-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 457

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  ML   +S+I  T   IG             R     ++ +FE  
Sbjct: 118 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGIEGSEYFVFE-- 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P   ++T I   H   F GIE++ SA  +    ++K   IF   +
Sbjct: 167 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L AK+       IY +G   N D++     + +  S  +   +G+ +   V   
Sbjct: 222 DVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPA 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D+      L  F     RG + R    +   T+I + + 
Sbjct: 276 YGKHNVLNALSVVAVCHNLGLDMTEVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 330

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381
            +P  ++A +    Q            PH   R IA   +  E+
Sbjct: 331 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 374


>gi|330684044|gb|EGG95800.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU121]
          Length = 437

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  +E++  A  E+   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--DPDYAIMTNIDFDHPDYFKDVEDVFDAFQEMAHNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
               DD +   L+A         IY +G ++  D   +  +   + S  +V + G+   +
Sbjct: 201 IAWGDDEYLRKLEADV------PIYYYGFNETDDVYAKNIQITEQGSQFDVYINGEFYGQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   ++D   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQYGDHNILNTLAVVTISYLEKMNIDNIKEALETFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +      LS + H+ L
Sbjct: 311 DD-YAHHPREINATIETARKKYPQKEVIAVFQPHTFSRTQAFLEEFAT--SLSAADHVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase
           [Kitasatospora setae KM-6054]
          Length = 480

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 29/144 (20%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK-------ATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +PV+G          + +A RLR+        A  +A+TG+ GKTTT +ML   L++  K
Sbjct: 99  VPVWG---------DVELAWRLRAPHPATGEPAPWLAVTGTNGKTTTVQMLASILTAAGK 149

Query: 136 TYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             A +G    ++GVP+    LA  P DV     EL    L         +R H   +  +
Sbjct: 150 RTAAVG----NVGVPVLDAVLAEEPYDVL--AVELSSYQL----HWAPSLRVHSGAVLNL 199

Query: 193 APAHLSNFSGIEEIASAKAEIFEG 216
           AP HL     +E  A+AK  I+EG
Sbjct: 200 APDHLDWHGSMEAYAAAKGRIYEG 223


>gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
 gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
          Length = 495

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D   + G +     
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHAHGQVEFREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I +TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 143 YNN 145
             N
Sbjct: 147 TGN 149


>gi|114778007|ref|ZP_01452907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551613|gb|EAU54166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
          Length = 460

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 43/319 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM 169
           IA+TG+ GK+TT  ++   L +  K+   +G    +IG P       ++  D  + EL  
Sbjct: 112 IAVTGTKGKSTTSTIIHRMLQAAGKSSVLVG----NIGKPAFDELEALEQADVIVCELS- 166

Query: 170 SHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           SH      LT + R P++AV+  + P HL  +S ++    AK  +F        + LN D
Sbjct: 167 SHQ-----LTTVTRSPNVAVLLNLFPEHLDYYSSLDAYYQAKTAVFRYQGPDDYLVLNAD 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               E  +  + AL  K  +S     + D QL  W    ++S + +Q  G  +EV H   
Sbjct: 222 SP--ECREMTTTALAKKLQFS-----HDDCQLDAW---FDESSIHIQTDGGDIEVPHACC 271

Query: 289 GYHMAQNM--LMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               A NM  +M   + +   A V+ A+  +AL  F     R +    ++ QG  T I++
Sbjct: 272 ELLGAFNMYNVMAAILATSRMAVVNRAVIEQALKGFTGLPDRMEYV--SVVQG-VTFIND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE---LSQSFHIDLAEVLSLYNI 401
           S +  P +  AA+S              A +G +   G+   ++   +  LA ++ LY +
Sbjct: 329 SISTTPDTTCAALSAFE-----------ASVGTLILGGQARPVATERYERLAAMIRLYGV 377

Query: 402 SHVWLSGFHVLALKDALPR 420
            H+     +  A++D L R
Sbjct: 378 QHLIFLPQNGPAMRDILQR 396


>gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 488

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|94994757|ref|YP_602855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10750]
 gi|118595696|sp|Q1J5S5|MURD_STRPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94548265|gb|ABF38311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10750]
          Length = 452

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250


>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus succinogenes 130Z]
 gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           succinogenes 130Z]
          Length = 437

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 37/277 (13%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +V+G +      A +++K  ++AITGS GK+T    +T  ++ + K          +IG+
Sbjct: 91  EVVGDIELFCREANIQAKP-VVAITGSNGKST----VTTLVAEMAKADGLRAGMGGNIGI 145

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P  L+ +  + D  + EL    L      T  +R   A +  +   H++ ++ +E+   A
Sbjct: 146 P-ALSLLDAEYDLYVLELSSFQLE----TTFGLRARAATVLNVTEDHMNRYADLEDYRQA 200

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I+   E   T  +N +DS  +  K ++     K  +SFG+S +AD+ L+   +  +Q
Sbjct: 201 KLKIYANAE---TAVINAEDSLTQDNKQRA-----KRQFSFGES-HADYWLK--TENGKQ 249

Query: 270 SWM---EVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323
             M   EV L    +++     G H   N L ++ +   V + T  + TA++  +     
Sbjct: 250 YLMAGREVVLPCDEVKIS----GRHNYMNALASIALAQAVGVKTHGIRTALRTFT----- 300

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            G   R++ A        I++S   N  S  AA++ L
Sbjct: 301 -GLDHRFQLAHLANGVRWINDSKATNVGSTVAALTGL 336


>gi|139473454|ref|YP_001128170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes str. Manfredo]
 gi|158512776|sp|A2RDK9|MURD_STRPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134271701|emb|CAM29934.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes str. Manfredo]
          Length = 452

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250


>gi|19746474|ref|NP_607610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS8232]
 gi|50914620|ref|YP_060592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10394]
 gi|30316063|sp|Q8P063|MURD_STRP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390307|sp|Q5XB04|MURD_STRP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|19748678|gb|AAL98109.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes MGAS8232]
 gi|50903694|gb|AAT87409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10394]
          Length = 452

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250


>gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
 gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
          Length = 486

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 116/292 (39%), Gaps = 30/292 (10%)

Query: 182 VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P I+V+T I P H+  + G I ++     +    L   G   L  DD   +++  +  
Sbjct: 185 LQPMISVVTNIEPDHMDTYGGDINKLYDTFVDFLHNLPFYGVAVLCLDDPGVQVILPRVG 244

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMT 299
               + I ++G   +AD +   + Q   ++   +    +  + +V +  G H  QN L  
Sbjct: 245 ----RRIVTYGFHPDADVRAEDFVQVGTRTQFTLHRPNRDPLPLVLNLPGRHNVQNALAA 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKA 355
           + +      + D    AL  F   +G G+R++         G   L+D+ Y  +P+ +  
Sbjct: 301 IAVAMEEGVEDDAIEAALDQF---QGIGRRFQQYGEFDTGAGKVLLVDD-YGHHPSEVAV 356

Query: 356 AISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            I                 PH   R   +  D C +  LS+   +D   ++ +Y+     
Sbjct: 357 TIKAARASWPDRRLVMVFQPHRFSRTRDLYDDFCAV--LSE---VDCLLLMEVYSAGEDL 411

Query: 406 LSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + G    AL +    R I   Y    +GL   +   L DGDVV+ + + + G
Sbjct: 412 IPGADSRALCRSIRQRGIDPVYVPGPEGLPALLADQLQDGDVVLTQGAGNIG 463


>gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 36/275 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELG 168
           II +TG+ GK+TT  ++   LS +    A  G++    G PL   A+   D+DF   E+ 
Sbjct: 102 IIGVTGTNGKSTTSALIAHLLSKLGYKTALAGNF----GFPLADFAKQ--DLDFIAAEIS 155

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNY 227
              L       +    HIAV+T I P HL      +    +K  I + L   G  ++ N 
Sbjct: 156 SFQL----HWANRFSCHIAVVTNICPDHLDWHGSFKAYVESKKRIIDLLSSDGYCVYQNK 211

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D         +   L   +  S GK +  D  +         S   ++ + + +++  + 
Sbjct: 212 DRELLRTNGCRGAVLRWASDCSTGKCEEQDEIIL------HDSEAYLRTESRDIKLFSYS 265

Query: 288 I----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTL 341
           I    G H  +N  M +  V  L  D +     LS F     +   +RC     +   T 
Sbjct: 266 ILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLLSDF-----KNLPHRCEKVGEKKGITF 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ID+S   N AS   AI+ +        G ++ +LG
Sbjct: 321 IDDSKGTNVASSITAITSIP-------GTKVIILG 348


>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 488

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 26/223 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ D+R + P   F AI G + DGH FI  A+ KGA +++    +       ++PV 
Sbjct: 25  VTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIAKGAQMIIAQEPV-----ETTVPVV 79

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA            +I +TG+ GKTT   ++      + +    IG+  
Sbjct: 80  YVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKTTVTHLIEEVFHDLGEGTGLIGTLY 139

Query: 145 NHIGVPL---------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
             +   +               TLA M  D +     + +S +  ++     +   I V 
Sbjct: 140 RKVNDQVYPTTNTTPDVLTNQKTLAEMR-DANVKTVSMEVSSIALVQGRVWGINYDICVF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDD 229
           T     HL+    + +   AK+ +F  +  T    T  +N DD
Sbjct: 199 TNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSGKTAVMNIDD 241


>gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
 gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
          Length = 477

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 168/400 (42%), Gaps = 53/400 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT  ++   +A + +  T+  IG   N  G    L +
Sbjct: 98  LAELMRLRKG---IAIAGAHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGTNAKLGQ 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G + +  +   +  FL  L  P +AV+T I   H+  +      +  A  +  
Sbjct: 154 -------GEYIVVEADESDASFLNLL--PVMAVVTNIDADHMETYGHDFGRLKQAFVDFL 204

Query: 215 EGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
             +   GT  L  D+ +  ++L + +       + S+G S+ A+ +    +    Q    
Sbjct: 205 HRMPFYGTAILCVDNPAIRDILPSVT-----CPVTSYGLSEGAEVRALDVRAVGTQMHFS 259

Query: 274 VQLQG----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           VQ +       ++VV +  G H   N L  + + + L    +  ++AL+ F    G G+R
Sbjct: 260 VQRRNGVTLPDLDVVLNLAGEHNVLNALAAIAVATELNVPDEAVLRALAGF---TGVGRR 316

Query: 330 YR-----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           ++      A + G FTLI E Y  +P  M A ++      P   GRR+ +          
Sbjct: 317 FQRHGDLPAQDGGRFTLI-EDYGHHPVEMAATMAAARGAYP---GRRLVLAFQPHRYSRT 372

Query: 385 SQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGL 433
              F  D  +VL   +   ++ V+ +G   +   D  +L R++ V       + + +  +
Sbjct: 373 RDCFE-DFVKVLGTADAVLLTEVYAAGEAPIVAADGRSLARALRVAGAVEPVFIDDVADM 431

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFY--RLINLLLE-EFPA 470
              I +S  DGDVV+   + S G    +++ +L + E PA
Sbjct: 432 PQRIAASAKDGDVVLCMGAGSIGGVPAKIVEMLQKNELPA 471


>gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           M50/1]
          Length = 459

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 158/387 (40%), Gaps = 43/387 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           A+    SIP+    ++LG +        + +    IA+ G+ GKTTT  M++  L + K 
Sbjct: 87  AAAKERSIPMLSRAELLGQI--------MDNYNNSIAVAGTHGKTTTTSMISQILLAAKA 138

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                   +  I V   L  +  ++  G  ++ +S   E         P  +VI  +   
Sbjct: 139 --------DPTISVGGILKAIEGNIKVGKSDIFLSEACEYTNSFLHFYPRYSVILNVEAE 190

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F  I++I ++  +     +K G I +N + +++ EL            + +FG + 
Sbjct: 191 HLDFFKDIQDIRNSFRKFAGNTKKDGAIIINGEIENYTELTSGLD-----PQVITFGLND 245

Query: 255 NADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           + D+      + + +  S+  +      M+V  H  G H   N L  + +   L    D 
Sbjct: 246 SCDYYPSDITFDKTACASFTAMHHGTPVMDVKLHVPGMHNVSNALAAIALSLDLGISTDA 305

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------I 363
            +  LS F   + R +   C       T+ID+ Y  +P  ++A ++              
Sbjct: 306 ILAGLSAFGGADRRFQYKGCVDG---VTIIDD-YAHHPTEIRATLTAAKNYPHKRLVLAF 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSI 422
            PH   R  A L D  ++  LS +  + LA++ +    +   +S   +LA LK+   +  
Sbjct: 362 QPHTYSRTKAFLDDFADV--LSMADVVVLADIYAAREKNTYGISSRDILAKLKE---KGT 416

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +Y  + + +  F+  + ++GD+++ 
Sbjct: 417 ECYYFPSFEEIEKFLLKNCINGDLLIT 443


>gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 487

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 136/367 (37%), Gaps = 48/367 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR +     F AI G   +GH++I  A + GA  +V        +  L  P  
Sbjct: 24  ITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGATAIVCE-----QLPQLLFPDV 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML--------------- 126
               V  + + LA+ A         K T++ +TG+ GKTT   +L               
Sbjct: 79  SYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAGQKAGLLS 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T+A+    + +    +  + + +   L  M    V +   E+    + + R  T  +   
Sbjct: 139 TVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYCFMEVSSHGIDQHR--TEGLHFA 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241
             + T +   HL            K   F+ L  T    +N DD       +  KA+   
Sbjct: 197 GGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPSTAFALVNIDDKNGAFMLQNTKAQKKT 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +KT        +AD++        E  +  + L+    EV    IG   A N+L   G
Sbjct: 257 YALKT--------HADYK----AHIIESRFDGLLLRINQHEVWTKLIGEFNAYNLLAVFG 304

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             ++L  D   A+  +S   P  GR +    A   G  T++D  Y   P +++  +  ++
Sbjct: 305 AATLLGVDELEALTLISAIEPVAGRFQYAVSA--TGVITIVD--YAHTPDALENVLKTIN 360

Query: 362 QISPHGE 368
            I  H E
Sbjct: 361 DIRTHNE 367


>gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
          Length = 486

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 147/372 (39%), Gaps = 66/372 (17%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   + F AI GP  DG DF+  A++KGA  +V   ++      L I      
Sbjct: 24  VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAEL-ISHPSPR 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS------- 142
           + LG L  +       SK  ++ ITG+ GKTTT  ++   LSS       +G+       
Sbjct: 83  EALGEL-AMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTVSYRWPG 141

Query: 143 YNNHIGVPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           Y      PLT          LA+M    VD  + E+    L + R     ++   AVIT 
Sbjct: 142 YEQE--APLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCG--LKFDAAVITN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSF-FELLKAKSHAL----- 242
           +   HL     +EE   AK  +F+      K G I  N+DD F   LL+  S A+     
Sbjct: 198 VTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGII--NFDDPFGRRLLECYSPAIGYGMD 255

Query: 243 -----GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK---SMEVVHHGIGYHMA 293
                G K++     S   D  +R    C  + W +E  L GK   S  +    IG HM 
Sbjct: 256 ASCATGCKSLCGEMVSCTGD-GMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLHMG 314

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPAS 352
                       LT       K ++VF   +G  G+  R   +QG    +D  Y   P +
Sbjct: 315 ------------LTP------KQMNVFKEFDGVPGRLERVRNDQGLNIFVD--YAHTPDA 354

Query: 353 MKAAISVLSQIS 364
           +   +  L  + 
Sbjct: 355 LDNVLRTLKDLD 366


>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. NATL1A]
          Length = 509

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 137/354 (38%), Gaps = 45/354 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+AI       +    +  +S DSR I   + F  + G   DG  F   A+++GA 
Sbjct: 5   LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGAC 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA-------LNKLAVA--ARLRSKATIIAITGSV 117
             +++        SL  P    D V+         + KLA     +  S+  +I ITG+ 
Sbjct: 65  AAIISKK-----ASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGS-------------YNNHIGVPLTLA-RMPVD--VD 161
           GKTTT  ++    +S+    A  G+             Y     VPL    R  V   V+
Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVE 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
           +G  E+    L + R        + A+ T ++  HL     +E    AKA +F    ++ 
Sbjct: 180 YGAMEVSSHALSQNRVAG--CDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDD 237

Query: 220 TGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            G    +N DD +  +L  + +    K  ++    +N+  + +     S    M+    G
Sbjct: 238 DGPRSVINIDDKWGSILAKELN----KKCWTCSLKENSQIREKPDLYISNLQIMQDGYMG 293

Query: 279 KSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           K       G      IG     NML  +GI+      ++  ++AL+ F    GR
Sbjct: 294 KLHTPFGVGNFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGR 347


>gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501]
 gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501]
 gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 485

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 26/258 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +L    A   +  T+         IG  LT A     +    + + 
Sbjct: 121 IAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGSSRYLIA 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H+S + G   ++     E    L   G   L  
Sbjct: 173 EADESDASFL-HL-QPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLAVLCV 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286
           DD     +  +   +G  T  ++G S++AD +    +Q   +++  V   G + ++V  H
Sbjct: 231 DDPVVREIIPQ---IGRPTT-TYGFSEDADVRAINVRQEGMRTYFTVLRDGCEPLDVSVH 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +    D +  ++ L+ F    G G+R++      ++ G   L+
Sbjct: 287 MPGNHNVLNALATIAIATDEGIDDEAIVQGLAEF---AGVGRRFQVYGNLPVDGGSVMLV 343

Query: 343 DESYNANPASMKAAISVL 360
           D+ Y  +P  + A I  +
Sbjct: 344 DD-YGHHPREVAAVIKAV 360


>gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL N1-067]
          Length = 491

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 161/425 (37%), Gaps = 45/425 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +    P   V+ I+ DSR +     F  I G   DGH F   A + GA 
Sbjct: 3   LNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            V+    +      ++IPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AVIAEKPI-----EVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFELG 168
           ++   +    +    IG+    IG          P +L             V   + E+ 
Sbjct: 118 LVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222
              L + R   +     +AV   ++  HL     +EE A AK+ +F  L           
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD     ++  + A     + +FG  +NADF+    +  S  S  ++       +
Sbjct: 236 AVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGSTFDLTTPAGKFK 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AI  +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAG--QDFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y+  P  +   ++VL  I      R   V+G  C  G+  +     +A++   Y  +
Sbjct: 350 D--YSHTPDGL---LNVLQTIDEFANNRVFVVVG--C-GGDRDKGKRPQMAKIAVQYATN 401

Query: 403 HVWLS 407
            V+ S
Sbjct: 402 PVFTS 406


>gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
 gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
          Length = 501

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 147/378 (38%), Gaps = 48/378 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   +AF A  G   DG  ++  A+ +GA  V+V  D     G  +  + G  
Sbjct: 26  LQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQGAAAVLVEAD-----GLQAFDLSG-- 78

Query: 90  DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136
           D + +L  L  A  L           +  ++A+TG+ GKTTT   L  ALS +    +  
Sbjct: 79  DRIASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTG 138

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+    +GVP  L                 R   D       +  S +G +     
Sbjct: 139 CALVGTLG--VGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLD 196

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK 238
             +  +A+ T     HL     ++    AKA++F+  GL    T  +N DD+    L A+
Sbjct: 197 GSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLP---TAVVNIDDAHGARLWAR 253

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +  ++S      A  Q +      E     V   G S+ +    +G +   N+L 
Sbjct: 254 LQGRAMD-VWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLG 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L   ++ A+ A +   P  GR ++    + +    L+   Y   P +++ A+ 
Sbjct: 313 VLAALRCLGLTLEEAVAACAHLEPVPGRMQQ----IVKPGQPLVAVDYAHTPDALEKALR 368

Query: 359 VLSQISPHGEGRRIAVLG 376
            L   +   +G+   V G
Sbjct: 369 ALQPAARQRQGKLWCVFG 386


>gi|15675424|ref|NP_269598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes M1 GAS]
 gi|71911066|ref|YP_282616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS5005]
 gi|81174547|sp|P0C0D8|MURD_STRP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13622612|gb|AAK34319.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71853848|gb|AAZ51871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS5005]
          Length = 452

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250


>gi|297243802|ref|ZP_06927732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
 gi|296888223|gb|EFH26965.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
          Length = 533

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 31/292 (10%)

Query: 49  PHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           P  D HDF      K   +V        T  +    S +IPV    +V  A      + R
Sbjct: 62  PDADIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMS--EVELAWRLRVPSNR 119

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A  I ITG+ GKT+T EM +  L++       +G    +IG  ++ A +  + D  
Sbjct: 120 TNKPAYWIGITGTNGKTSTTEMTSAMLTTCGLNAPAVG----NIGKSVSHAALECEHDAL 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L      T  +    A IT IA  HL    G+E  A  K+++F  ++K   +
Sbjct: 176 CVELSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSKVFNNVQK-ALV 230

Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSM 281
           +   D+   +L      A G K I ++ G+ K+ +  ++  W    + S +    +G   
Sbjct: 231 YNAQDERVSKLADCAQVADGCKKIGFTLGEPKDGEIGVKDGW--IVDNSGVAGGTKGTLK 288

Query: 282 EVVH----------HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +V            G  Y H+  + L  L +   LT DVD++++AL  F P
Sbjct: 289 PIVELRELKHLCEPDGSVYPHLLADALTALALSLGLTGDVDSSVRALREFTP 340


>gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 490

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas
           maltophilia R551-3]
          Length = 502

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 158/385 (41%), Gaps = 43/385 (11%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+P      LL   A+ GH         + G+ +DSR++ P  AF AI G    G  F+ 
Sbjct: 1   MSPSMLLSQLLPDVALAGHDP------VLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54

Query: 59  HAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            A   GAG ++       ++ A + ++++P  G+   +GA+      A  R+ A ++ +T
Sbjct: 55  QARAAGAGAILFEPPAPAELPAPVDAIAVP--GLRARMGAMADQFHGAPSRAMA-MVGVT 111

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL---ARMPVDVDF 162
           G+ GKT+T ++L  A   +      IG+    +           PL L   A +    D 
Sbjct: 112 GTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDA 171

Query: 163 GIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EG 216
           G   + M   SH L + R     V   +AV T +   HL     +    +AKA +F   G
Sbjct: 172 GARAVAMEVSSHALDQGR--VDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPG 229

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           L+      +N DD+F   L A   A G++ I  S   + +A  +    +        E+ 
Sbjct: 230 LKAA---VINLDDAFGRQLFAGLPA-GVQPIGLSSRGATDAIVRAEALQLDGRGIAFELA 285

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + G+   V    +G     N+L   G +      +    + LS   P   RG+  R    
Sbjct: 286 IDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPI--RGRMNRLGGE 343

Query: 336 QGFFTLIDESYNANPASMKAAISVL 360
            G  T++ + Y   P +++ A+  L
Sbjct: 344 DGLPTVVVD-YAHTPDALEQALDSL 367


>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
 gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
          Length = 509

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 143/371 (38%), Gaps = 32/371 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +  +SR   P   F AI+G   DGH++I  AV+ GA ++V   ++        + V 
Sbjct: 25  VSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVRCGAKVIVCEKEVTMPPEITVVRVE 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
                LG L +   A   R     +A+ G+ GKTT   +L     +   +   +G+ N  
Sbjct: 85  NGRRTLGLLARNFYADPSRC-LVAVAVMGTNGKTTVTYILESIFQAAGFSCGVLGTVNYR 143

Query: 145 ---------NHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
                    N     L L R+  + VD G+  L     SH  ++R +       + + T 
Sbjct: 144 YPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLVAEVSSHAVDLRRIDD-CDFDLGIFTN 202

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTG------TIFLNYDDSFFELLKAKSHALGIK 245
           +   HL     +E    AK   F  +   G       + +N DD + + L  ++    I 
Sbjct: 203 LTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHRYAMAVNADDPWGKRLIRETGE--IS 260

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG  + AD +   +    +    E+ +   S +V    IG     N+L  +     
Sbjct: 261 RPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMSFDVDTALIGKFNLYNVLAAVSASVA 320

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++   + +   +   GR ++   +     F  +D ++  +     A   VL  +SP
Sbjct: 321 LRVPIEAIRRGVRAMNAVPGRLEKVSGSTQPDVF--VDYAHTDD-----ALRRVLQSLSP 373

Query: 366 HGEGRRIAVLG 376
              GR I V G
Sbjct: 374 FKRGRIITVFG 384


>gi|71903854|ref|YP_280657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS6180]
 gi|209559688|ref|YP_002286160.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes NZ131]
 gi|122063268|sp|Q48SK8|MURD_STRPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226722949|sp|B5XMA3|MURD_STRPZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71802949|gb|AAX72302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS6180]
 gi|209540889|gb|ACI61465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes NZ131]
          Length = 452

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250


>gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
 gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
          Length = 495

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 154/384 (40%), Gaps = 47/384 (12%)

Query: 22  VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           +PQ     ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         
Sbjct: 14  IPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGV 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132
           S+   +I V G+   LGA+     A R     S+A T++ +TG+ GKT+T ++L  A   
Sbjct: 74  SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHC 128

Query: 133 IK-KTYAC----IGSYNNHIGVPLT----------LARMPVDVDFGIFELGM---SH-LG 173
           +  ++  C    +G Y+  +    T          LA++    D G   + M   SH L 
Sbjct: 129 LGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLR---DEGAQAVAMEVSSHALD 185

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-F 232
           + R     V   + V T +   HL     +E   +AKA +F   +    + +N DD F  
Sbjct: 186 QGR--VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAV-INVDDPFGL 242

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            LL   +  +    +   G + +AD   +      +    ++ +      V    +G   
Sbjct: 243 RLLHGLAKGMRRVGVSVCGHT-DADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFN 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L   G++  L   +      LS   P  GR  R      Q    +    Y   P +
Sbjct: 302 VDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDA 358

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +     VLS +S H  GR I V G
Sbjct: 359 LG---QVLSSLSSHVCGRLICVFG 379


>gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 2336]
 gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           2336]
          Length = 436

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 146/356 (41%), Gaps = 60/356 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GK+T    +T  +S + K          +IG+P  L  +  D D  + EL  
Sbjct: 108 IIAITGSNGKST----VTTLVSEMAKEDGLKVGIGGNIGIP-ALELLQQDYDLYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A I  I+  H+  +  IE+   AK  I+E  ++     +N +D
Sbjct: 163 FQLET----TYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQRA---VINAED 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHH 286
                    +    +K+  +FG+S+ AD+ L+   +  +Q  M  +   L    M++V  
Sbjct: 216 VL-------TTTEDLKSPITFGESQ-ADYWLK--TENGKQYLMAKERLILPCDEMKLV-- 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDES 345
             G H   N L      S L   VD +  A+     K  G   R++ A  +     I++S
Sbjct: 264 --GRHNYMNALA----ASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDS 317

Query: 346 YNANPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
              N  S  AA++ L   +       G+G+                    D +E+ +L N
Sbjct: 318 KATNVGSTVAALTGLYVANKLHLLLGGDGK------------------SADFSELATLIN 359

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             H++   F     K+    S+     +TM+     I+ +L  GD+V++  S +C 
Sbjct: 360 QPHIYCYCFGQDG-KELAALSVQSQLFDTMEQAIEAIRPNLQQGDMVLL--SPACA 412


>gi|110598577|ref|ZP_01386845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339811|gb|EAT58318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 465

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVP---LTLA 154
           A L  +A ++ ITG+ GKTTT  ++      I +    + +Y      +IG+P   + L 
Sbjct: 99  AALFCRARVVGITGTDGKTTTATLI----HRICEADGLLHNYRAFSVGNIGIPFSSMVLE 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
             P DV   + EL    L          RP IAVIT I P HL+ + G +   A+AK  I
Sbjct: 155 MHPRDV--AVVELSSYQLERCVAF----RPDIAVITNITPDHLARYEGDMHRYAAAKFRI 208

Query: 214 FEGLEKTGTIFLNYDDSFF 232
           ++   +  T+  N DD   
Sbjct: 209 YQNQGERDTLIYNDDDPLL 227


>gi|94988878|ref|YP_596979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS9429]
 gi|94992769|ref|YP_600868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS2096]
 gi|122063265|sp|Q1JAT4|MURD_STRPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063266|sp|Q1JKY4|MURD_STRPC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94542386|gb|ABF32435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS9429]
 gi|94546277|gb|ABF36324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS2096]
          Length = 452

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250


>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
 gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 489

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 148/375 (39%), Gaps = 37/375 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +  DSR I P + F A  G   DG D+I  A+ K A  V    +         +P+
Sbjct: 22  LIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVFYEANQYNPSIQTKVPL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              +++   + +  +AAR     +    II ITG+ GKT+  + +  AL S       IG
Sbjct: 82  IPFENLQHRIGE--IAARFYDDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIRCGVIG 139

Query: 142 SY-----------NNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           +            ++    P+ L +   ++   G   + M   SH    R +   V+  I
Sbjct: 140 TLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEG-VQFDI 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK-SHALG 243
           AV T ++  HL     +E  A AK  +F+  GL  TG +  N DD+  + + A   H L 
Sbjct: 199 AVFTQLSRDHLDYHGDMENYARAKELLFQQPGLH-TGVV--NCDDALGKRIIAHYRHQLT 255

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +    + G K       +    Q   Q + +EVQ             G     N+L  L 
Sbjct: 256 LVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLLAVLS 315

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++ +     D A+  LS      GR +     ++      I   Y   P +++ A++ L 
Sbjct: 316 VLCLCEIPFDKALLELSQLRNVPGRMQ----VVDSQRQPQIIVDYAHTPDALEKALTALR 371

Query: 362 QISPHGEGRRIAVLG 376
           +   H +GR I V G
Sbjct: 372 E---HCQGRLICVFG 383


>gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
 gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
          Length = 488

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 152/397 (38%), Gaps = 47/397 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +  + I       V  +  DSR  A   AF A+KG   DGH FI  A+  
Sbjct: 1   MKNLKDILYKVSANKIFGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLFIDKAINL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA +VVV  D         +    V D   AL  +A        SK  +I +TG+ GKTT
Sbjct: 61  GA-IVVVCEDFPKEQKE-GVTYIQVSDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTT 118

Query: 122 TKEML---------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIF 165
              +L               T+ +   +  +    +  + + +   L +M    VDF   
Sbjct: 119 VASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +     V T ++  HL          + K   F+ L K+  +  
Sbjct: 179 EVSSHGIHQKR--TEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDTLPKSAFVLA 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KS 280
           N DD     +   S A  IK  Y+   +  AD++++          +E QL G       
Sbjct: 237 NIDDKNGRFMLQNSKA--IKKTYALKTA--ADYKVK---------ILEKQLSGTLIALDG 283

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFF 339
            EV    IG     N+   +    +L  +    ++ L++    E    R+   ++Q G  
Sbjct: 284 TEVWIKLIGVFNIYNVTAVIATAELLGLE---KLEILTILSALESVSGRFEYVISQDGVT 340

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++D  Y   P ++K  +  ++ I    E + I VLG
Sbjct: 341 AIVD--YAHTPDALKNVLETINDIKIGAE-KVITVLG 374


>gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
 gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
          Length = 527

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 19/233 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V G++ DSR++ P + + A+ G +  G DF + AV  GA  V+ +    A + G +++PV
Sbjct: 59  VTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAARLAGRVAVPV 118

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              DD    L  +A  V        T++ +TG+ GKTTT  +L   L +   T   +G+ 
Sbjct: 119 LVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAAGHTTGLLGTV 178

Query: 144 NNHIG---VPLTLARMPVDVDFGIFELGMSHLGE----IRFLTHLVRPHI--------AV 188
              IG   VP ++   P   D       M   G     +   +H +  H         A 
Sbjct: 179 QTRIGGTVVP-SVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVDALRFTGAA 237

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            T ++  HL     +E+  +AKA +FE       +    DD    L + +  A
Sbjct: 238 FTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKDAVICVDDDWGRRLARQRPDA 290


>gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
 gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
          Length = 458

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 26/296 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++ A+I  L IPV    ++L  L +L            +A+ G+ GKTT   ++   L
Sbjct: 78  NPEVAAAI-ELQIPVIPRAEMLAELMRLKYG---------VAVAGAHGKTTCTSLVATLL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++        G  +  + V   L  +  +   G  E  ++   E     + + P + V+T
Sbjct: 128 AA--------GGLDPTVVVGGKLGALGTNAVLGRGEFLVAEADESDGSFNRLSPVVVVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+ ++   + +  A  E    +   G   +  DD     L  +      K + ++
Sbjct: 180 NIDREHMDHYGSDQALDEAFVEFMNKVPFYGAAIICLDDPRVAALIPRVR----KRVITY 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTAD 309
           G+S  ADF+ R+      ++   +  QG+++  V   + G H   N L  L +   L   
Sbjct: 236 GQSGQADFEAREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTLAALAVAKELGVA 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  A+ A + F    G G+R           L+ + Y  +P  ++A +       P
Sbjct: 296 MPVAMSACAGFG---GVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWP 348


>gi|308235556|ref|ZP_07666293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14018]
 gi|311114356|ref|YP_003985577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
 gi|310945850|gb|ADP38554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
          Length = 525

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +  + A  + ITG+ GKT+T EM +  L++       +G    +IG  ++ A M  + D 
Sbjct: 112 KTNNPAPWVGITGTNGKTSTTEMTSEMLTACGFDAPAVG----NIGKSVSHAAMESEHDV 167

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      T+ +R   A IT IA  HL    GIE  A  K+++F G++K   
Sbjct: 168 LCVELSSFQL----HFTNSMRLDCAAITNIAADHLDWHGGIEAYAKDKSKVFNGVKK--A 221

Query: 223 IFLNYDDSFFELLKAKSH 240
           +  N  DS    L A + 
Sbjct: 222 LVYNAQDSRVSELAANAQ 239


>gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum]
          Length = 486

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 134/337 (39%), Gaps = 38/337 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140
           IPV    D+LG          L   +T + I G+ GKT+T  M  +A+ +  +  ++A  
Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N          +   +   G  E+ ++   E        +P++AV+T + P HL  F
Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259
              E       +    +   G + +  +D     L  +S   GIKT+ Y    +  A  +
Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTRDAVQAHPE 263

Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +         +  +E +   + + G+ + V+    G HM  N    L    ++  DVD  
Sbjct: 264 VPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323

Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAI-SVLSQISPHGE 368
           ++ LS F    G  +R+    A+  G F    I + Y  +P  + A +    +++   G+
Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLRRCATRVKAAGK 380

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           GR I        +   +  F  + AE LSL + + V 
Sbjct: 381 GRVIVAF--QPHLYSRTMEFQKEFAEALSLADAAVVL 415


>gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 129PT]
 gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           129PT]
          Length = 436

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 146/356 (41%), Gaps = 60/356 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GK+T    +T  +S + K          +IG+P  L  +  D D  + EL  
Sbjct: 108 IIAITGSNGKST----VTTLVSEMAKEDGLKVGMGGNIGIP-ALELLQQDYDIYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A I  I+  H+  +  IE+   AK  I+E  ++     +N +D
Sbjct: 163 FQLET----TYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQRA---VINAED 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHH 286
                    +    +K+  +FG+S+ AD+ L+   +  +Q  M  +   L    M++V  
Sbjct: 216 VL-------TTTEDLKSPITFGESQ-ADYWLK--TENGKQYLMAKERLILPCDEMKLV-- 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDES 345
             G H   N L      S L   VD +  A+     K  G   R++ A  +     I++S
Sbjct: 264 --GRHNYMNALA----ASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDS 317

Query: 346 YNANPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
              N  S  AA++ L   +       G+G+                    D +E+ +L N
Sbjct: 318 KATNVGSTVAALTGLYVANKLHLLLGGDGK------------------SADFSELATLIN 359

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             H++   F     K+    S+     +TM+     I+ +L  GD+V++  S +C 
Sbjct: 360 QPHIYCYCFGQDG-KELAALSVQSQLFDTMEQAIEAIRPNLQQGDMVLL--SPACA 412


>gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus
           polymyxa SC2]
 gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa SC2]
          Length = 473

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165
           KA II ITGS GKTTT   +   L +        G    +IG PL  A +    D + + 
Sbjct: 111 KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAG----NIGTPLCEAAVDAKSDEWMVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L   +      +P +A +  +A  HL    G+E+  ++KA +F     + T  +
Sbjct: 167 ELSSFQLKGTKDF----KPAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVV 222

Query: 226 NYDDSFFELL 235
           N+DDS    L
Sbjct: 223 NWDDSVCREL 232


>gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
 gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 13/193 (6%)

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKS--HALG 243
           A  T +   HL     ++E  +AK  +FE L   G T  LN D   +    + S    LG
Sbjct: 67  AGFTNLTQDHLDYHGTMDEYRAAKMRLFEALLPRGRTAVLNADSDAYSAFASASIMAGLG 126

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +   G+    D  L   +   E   + + ++G+  +V+    G   A N L+  G+ 
Sbjct: 127 VMGVGERGR----DLTLLARRATPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLC 182

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D D  I AL +    +GR +R       G   +    Y   P  ++   +VL+ +
Sbjct: 183 IAGGEDPDRVIPALELIQGAQGRLQRIPGGARGGEVYV---DYAHTPDGLE---TVLNAL 236

Query: 364 SPHGEGRRIAVLG 376
            PH  GR I V G
Sbjct: 237 RPHATGRLIVVFG 249


>gi|225009953|ref|ZP_03700425.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005432|gb|EEG43382.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
          Length = 318

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  AAR  ++A +I ITGS GKTTT  +    L S  K  A  G+        +  A
Sbjct: 90  IDEVEFAARY-TEAVLIGITGSNGKTTTTMLTHHILKSDGKAVAMGGNIGVSFAKLVYEA 148

Query: 155 RMPV--DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +P    +D+ + EL    L  I       RPHIA+IT I+P HL  + G E      A+
Sbjct: 149 HLPEAEKIDYYVLELSSFQLDNIENF----RPHIAIITNISPDHLDRY-GYEMDRYTAAK 203

Query: 213 IFEGLEKTGTIFLNYD 228
               + +  T +L YD
Sbjct: 204 FRISMNQLPTDYLIYD 219


>gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
 gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
          Length = 508

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 158/401 (39%), Gaps = 52/401 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR ++    FFA+ G +++G  FI  A+Q+G+ ++V   D+     +++      
Sbjct: 33  GLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDIDFYDSNVTYIKVDP 92

Query: 89  DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG----- 141
            ++   ++  A         K  II +TG+ GK++    +   L S+      I      
Sbjct: 93  CNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLE 152

Query: 142 -------------SYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHL-VRPHI 186
                        S      + L L++M   +V++ I E   SH  + R    L +   +
Sbjct: 153 DGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIE-STSHGLDDRTSRLLDIEYSV 211

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIK 245
           AV+T I+  HL     ++    AK  +F      G    +N DD+ F +         I 
Sbjct: 212 AVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHGGFGIINMDDNHFSVFMN-----SIN 266

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             Y++  K++ ADF + K  +         Q+     E  H+   Y    N+  +  + +
Sbjct: 267 RTYTYSLKNEKADFFISKINE---------QMGFTEFEFYHNKTKYAARVNLTGSFNVEN 317

Query: 305 ILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           ++ A        +VD +     + + +   G+       Q F  ++D  Y   P +    
Sbjct: 318 VMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLIVD--YAHTPGAFLKM 375

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             +  +++   + R I+V G   E   L +    ++A+  S
Sbjct: 376 FPIFKRLA---KKRLISVFGSAGERDILKRRLQGEIADEYS 413


>gi|56808764|ref|ZP_00366481.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M49 591]
          Length = 438

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 96  SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 151

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 152 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 207

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 208 LNANQEISATLAKTTKA----TVIPFSTQKVVD 236


>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 499

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 166/410 (40%), Gaps = 63/410 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  DSR I     F AIKG   DGH +I  A+++GA  VV+  +     G   +   
Sbjct: 23  LTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGAVAVVLAQERTLPPG---VAWV 79

Query: 87  GVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            VDD   AL +L  AAR       K  +I +TG+ GKTTT  ++   L +  +    +G+
Sbjct: 80  RVDDTRLALGQL--AARFYDYPSRKLRLIGVTGTNGKTTTTHLIQAILEAGGRPAGLVGT 137

Query: 143 YNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187
             N +G  +  A    P  +D       M  L + R +   V  H             +A
Sbjct: 138 IGNRLGDRVLPAEHTTPESLDLQHLLYQMVSL-QARAVVMEVSSHALALHRVAGTEFDVA 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIF--LNYDDSFFELLKAKSHAL 242
           V T +   HL     +E+  + KA +F+GL+   K G  +  +N DD +   L     AL
Sbjct: 197 VFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPKYAVINGDDPYGSRLA----AL 252

Query: 243 GIKTIYSFG-----KSKNADFQLRKWKQCSEQSW------MEVQLQGKSMEVVHHGIGYH 291
               + ++G     + +  D  L      S  +W      ME++L G+          Y+
Sbjct: 253 TPVPVVTYGCTPGCQVRARDIHLETGGSTSLVTWPGGEAAMELRLTGR----------YN 302

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           +  N L  L +      D   AI+AL  F    GR +  R    Q F  ++D  Y   P 
Sbjct: 303 I-YNALAALAVALQEGIDPQVAIRALGRFKGVPGRLE--RVDQGQPFTVVVD--YAHTPD 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++  +    Q++    GR + V G   +     +      A  LS Y+I
Sbjct: 358 GLENVLRAARQVT---RGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSI 404


>gi|21672877|ref|NP_660942.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium tepidum
           TLS]
 gi|30316059|sp|Q8KGD2|MURD_CHLTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21645929|gb|AAM71284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium tepidum
           TLS]
          Length = 465

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 108 ATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFG 163
           A II ITG+ GKTTT  +L    A    +K +      N  IG+P + + +P     D  
Sbjct: 108 ARIIGITGTDGKTTTATLLHRICAAEGERKGFRAFSVGN--IGIPFS-SEVPGMTAADIA 164

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
           + EL    L E  F     RP+IAV+T + P H+  + G IE  A+AK  I        T
Sbjct: 165 VLELSSYQL-EACFD---FRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGDT 220

Query: 223 IFLNYDD 229
           +  N+DD
Sbjct: 221 LIYNHDD 227


>gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
 gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
          Length = 477

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 54/286 (18%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A + +  T+  IG   N  G                    
Sbjct: 122 IAVAGTHGKTTTTSLIASVFAEARLDPTF-VIGGLLNSAGT------------------- 161

Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
            + LGE RFL            HL +P ++V+T I   H++ + G   ++     E    
Sbjct: 162 NAQLGESRFLVAEADESDASFLHL-QPMVSVVTNIEADHMATYDGDFNKLKKTFVEFLHN 220

Query: 217 LEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           L   G   +  DD    ELL A   A       ++G S +ADF +    +   ++   V+
Sbjct: 221 LPFYGMAVMCIDDDVVRELLPAVGRA-----TLTYGFSHDADFSIVDVNKLGLRTSFSVK 275

Query: 276 LQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC- 332
             G  K +++  +  G H   N    + + +    D +   + +  F   EG G+R++  
Sbjct: 276 RPGKHKQIDITINMPGDHNVLNATAAIAVATDEGIDDEAIQRGIEKF---EGVGRRFQVY 332

Query: 333 ---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
               + +G   L+D+ Y  +P  ++A IS   Q  P    RR+ ++
Sbjct: 333 GEFDIEEGSVLLVDD-YGHHPTEVEATISAARQAWPD---RRLVMV 374


>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
 gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
          Length = 485

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 24/255 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASI 78
           G  P   V GI+ DSR + P   FFA++G   +G+ F   A++KGA  VV ++      +
Sbjct: 15  GGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKGASAVVTDSRKWFEKL 74

Query: 79  GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +   PV  V++   AL   A  +    + +  I+ +TG+ GKTTT  +L  AL+ +   
Sbjct: 75  SAAGKPVLLVENSRKALATAAANLYGNPQKELKILGVTGTNGKTTTTFLLFKALNRLGVK 134

Query: 137 YACIG--SYNNHIGVPLTLARMPVDV--------------DFGIFELGMSHLGEIRFLTH 180
              IG  S+ +   +  +    P  V              +F + E+    L + R   H
Sbjct: 135 AGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVVCEVSSHGLHQHR--VH 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    A+ T + P HL     +EE   AKA++F  L K   +  N DD +   L A   
Sbjct: 193 GIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFR-LSKLSVV--NRDDPYGTTLSALRA 249

Query: 241 ALGIKTIYSFGKSKN 255
             G KT+    KS+N
Sbjct: 250 VNGGKTVTYGKKSRN 264


>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
 gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
          Length = 487

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     P+
Sbjct: 17  LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+  AVA R   + +    +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 77  IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +                 + + V  TLA +       V ++     L    +  + F   
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T ++  HL     +E  A+AKA++F   GL       +N DD F   L  +
Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVVNLDDDFGRRLAGE 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290
                + T YS   S         +  C E  + +  ++  +  V  HG        +G 
Sbjct: 245 EQYSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  +G +  L   +   ++ L       GR +R    L  G   L+   Y   P
Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            +++    VL  + PH   R + + G
Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373


>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 509

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 35/253 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+AI       +    +  +S DSR I   + F  + G   DG +F   A+++GA 
Sbjct: 5   LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGAC 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA-------LNKLAVA--ARLRSKATIIAITGSV 117
             +++        SL  P    D V+         + KLA     +  S+  +I ITG+ 
Sbjct: 65  AAIISKK-----ASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGS-------------YNNHIGVPLTLA-RMPVD--VD 161
           GKTTT  ++    +S+    A  G+             Y     VPL    R  V   V+
Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVE 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
           +G  E+    L + R        + AV T ++  HL     +E    AKA +F    +E 
Sbjct: 180 YGAMEVSSHALSQNRVAG--CDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIED 237

Query: 220 TGTI-FLNYDDSF 231
            G    +N DD +
Sbjct: 238 GGPRSVINIDDKW 250


>gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 461

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 25/269 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+ + L       A I      +G  +           G F    +
Sbjct: 109 IAVAGTHGKTTTSAMIGLMLEQCGLDPAII------VGGEIREIEGNAKWGQGDFMAAEA 162

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +  FL   + P +AVIT I   HL ++   E I  A  +  E L   G + L  DD 
Sbjct: 163 DESDRSFLK--LSPWMAVITNIEADHLDHYQSFEAIVEAFYQFTERLSGDGILLLCADDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKSMEVVHH 286
              LL+  +  +  + + ++G    AD++        + S  ++    +  G+ M  V  
Sbjct: 221 ---LLQEMAQRVTARRVVTYGMKAKADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVP- 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +    ++      A  ALS F    G G+R++        +++D+ Y
Sbjct: 277 --GEHNMSNALAAVACADLIGIPFAAAAAALSRFG---GVGRRFQRMGEAKGVSVVDD-Y 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  +KA ++   Q  P   GR +AV 
Sbjct: 331 AHHPTEVKATLAAARQTQP---GRLVAVF 356


>gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
 gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
          Length = 498

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 153/397 (38%), Gaps = 64/397 (16%)

Query: 20  GIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           G+VP         +  I +DSR I     F A+ G  Y G  F+  A++  A  V+ + D
Sbjct: 15  GLVPSNEIYTDPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDED 74

Query: 74  ----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                      + IP+   +D    L+K          +T+IA+TG+ GKT+        
Sbjct: 75  GFNFAKKIFTKIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANF---- 130

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRF--LTHL---- 181
               ++ + C+G    +IG       + +++     E  + H  L EI    +TH     
Sbjct: 131 ---TRQIWECLGKKAVNIGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEA 187

Query: 182 ------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD 228
                       V    A  T     HL      +   ++K  +FE  L   G++ +N D
Sbjct: 188 SSHGLDQKRLDGVYLTAAAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMD 247

Query: 229 DS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQ---SWMEVQLQGK 279
           D      +E+ K +      + I + GK+ N D  L+   +    +Q   SW + +++  
Sbjct: 248 DPKGLYIYEVAKLRG-----QDIITVGKN-NCDLTLKNCTFDATGQQILFSWRD-EIKSV 300

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +++    IGY  A N+L    +V       +     LS      GR  +     + G  
Sbjct: 301 RLDL----IGYFQAMNILQAAALVIACGEQPNDVFDTLSELRTVSGR-MQLAAKRSNGAS 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +D  Y   P +++ A   L  + PH  GR + ++G
Sbjct: 356 VFVD--YAHTPDAVETA---LKAMRPHVMGRLLIIVG 387


>gi|10566906|dbj|BAB16028.1| MurD [Streptococcus pyogenes]
          Length = 439

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  ++    G    +IG P + + +  +  D  +
Sbjct: 97  SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 152

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +    +  RPHIAVIT + P HL      E+  +AK  I   + ++  + 
Sbjct: 153 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 208

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           LN +      L   + A    T+  F   K  D
Sbjct: 209 LNANQEISATLAKTTKA----TVIPFSTQKVVD 237


>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O395]
 gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
 gi|172047587|sp|A5F5N1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
 gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
          Length = 440

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 185/447 (41%), Gaps = 85/447 (19%)

Query: 32  IDSRSIAP-QEAFFAIKGPHYDGH--DFILHAVQKGAGLVVVN------TDMVASIGSLS 82
           ID+R I P QE   +    H  G   +++L+A      LVV N      T  +  + +  
Sbjct: 38  IDTREIPPGQEQLSSDVALHRGGWNLEWLLNA-----DLVVTNPGIALATPEIQQVLAAG 92

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV G  ++                  +IAITGS GK+T  + L+  L++     A +G 
Sbjct: 93  IPVVGDIELFA----------WHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG- 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +IGVP  L  +  DV+  + EL    L      T  ++   A    ++  H+  + G
Sbjct: 141 --GNIGVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQG 193

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-- 260
           + +   AK  IF+  E   T  +N DD+         HA  ++ + +FG  + A F L  
Sbjct: 194 MGDYRQAKLRIFDHAE---TAVVNADDT----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ 245

Query: 261 ---RKWKQCSEQSWM---EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
              R++    +++ M   E+ L           +G H   N+L  L ++     +   A+
Sbjct: 246 HQGREYLFARDEAVMACAELSL-----------VGRHNVTNVLTVLALLDSAGVNFRLAL 294

Query: 315 KALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            AL     K   G  +RC   A N G    +++S   N AS  AA+S L       EG+ 
Sbjct: 295 DAL-----KSYTGLTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQL 343

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             ++G + +  + +      LA VL+   +    L  F V      +P      + ++M+
Sbjct: 344 YLLVGGVGKGADFTP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSME 394

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +   I+  L  GD+V++  S +C  +
Sbjct: 395 SIIRSIRPQLKSGDMVLL--SPACASF 419


>gi|327399129|ref|YP_004339998.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
 gi|327181758|gb|AEA33939.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
          Length = 460

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 135/319 (42%), Gaps = 27/319 (8%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKAT 109
           Y GH   L  +++   LVVV++    ++ + +I +   D + +  + +  + A L + + 
Sbjct: 58  YLGHS--LSNIEEDVDLVVVSS----AVKNDNIELIQADKLNIPTIKRYQLLAHLVNNSN 111

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IA+ GS GKTTT  +    L +      A IG    +I   + + +     ++ I E  
Sbjct: 112 SIAVAGSHGKTTTTSLSASLLKNANLDPTAIIGGKLRNINNNVIIGK----CNYLIVEAD 167

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G   FL  L+ P I ++T I   HL  +   E   + K   ++ ++ +  + +N D
Sbjct: 168 ESDGG---FL--LLNPKIGLLTNIDNDHLGFYGNFE---NEKVAFYDFMDNSEKLIINID 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287
           D   +  K  S    + T YS  KSK AD      +  +  S   ++   K +E +    
Sbjct: 220 DPIIKQWKNLSKRQNLLT-YSI-KSKKADVYAYDIQTNAAYSIFSIKTPTKKIEQIKLKI 277

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H   N L  + +  IL    D   K LS F   EG  +R+    N     + D+ Y 
Sbjct: 278 IGTHNISNALAVVCLAEILEIGEDIIRKTLSEF---EGVDRRFTYVGNYRNLKVYDD-YA 333

Query: 348 ANPASMKAAISVLSQISPH 366
            +P  ++  +     IS +
Sbjct: 334 HHPTEIRETLKAAKLISKN 352


>gi|256845954|ref|ZP_05551412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_36A2]
 gi|256719513|gb|EEU33068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_36A2]
          Length = 432

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 173/427 (40%), Gaps = 62/427 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H DG +F +    K  G+   N   V  +    I +  +D++ 
Sbjct: 32  DKKAMTSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 78

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   +++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 79  IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLS 131

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P+I++I  + P H+  +   +E    K 
Sbjct: 132 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKF 187

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQC-SEQ 269
            I +   +      N DD     ++ +  A  IK    S  K K AD  ++  K C  E 
Sbjct: 188 NITKNQTEDLYFIENIDD-----VEIEKRAEQIKAKKISVSKIKKADIFVKNDKICHGEN 242

Query: 270 SWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           S ++V +L  K         G H  +N L  +    IL  D +   + L +  P E R +
Sbjct: 243 SIIDVDKLSLK---------GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTE 293

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +    N G    I++S   N  S K AI              I + G   +  +L+   
Sbjct: 294 LF---FNYGKVKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP-- 340

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              LAE++   NI  V+L G     ++  L +   + Y +      + +++SL D     
Sbjct: 341 ---LAEMIK-ENIKEVYLIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRF 393

Query: 449 VKSSNSC 455
            K SN  
Sbjct: 394 TKESNEV 400


>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 486

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ +S++      F  IKG   DGH++I  A+Q GA LVVV+     S     I   
Sbjct: 24  ITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQNGACLVVVDEFFDTSKIEGKIDYI 83

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              +   AL  ++            +I +TG+ GKT+T  M+   L +  +    IG+  
Sbjct: 84  KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIK 143

Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189
           N IG     A+   P   D           G+  + M   SH  E+ F  +     + V 
Sbjct: 144 NMIGSIEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E   +AK ++F G+ K   +  N DD +      K          +
Sbjct: 203 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDMW-----GKRIIEMYPDSVT 254

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           + K  +A    R  K    ++  E+   G+  E+  +  G     N L        L   
Sbjct: 255 YAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSLAASACCISLGIK 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D   K L       GR +      NQ F  +ID  Y   P  +   +  +++++   +G
Sbjct: 315 LDDIKKGLENLKAVPGRFEIVES--NQKFTVVID--YAHTPDGLLNLMKTVNEVT---DG 367

Query: 370 RRIAVLG 376
           R++ + G
Sbjct: 368 RKVLLFG 374


>gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
 gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
          Length = 465

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRTPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY      + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +A    DAL R++         + ET+D L   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
 gi|226711907|sp|A8ZXW5|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
          Length = 459

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 21/172 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV G         ++ +AAR  +K  + A+TG+ GKTT   +L   L +  +     G 
Sbjct: 96  IPVMG---------EMELAARFVTK-PVAAVTGTNGKTTVTTLLGDMLKASGRQVFVGG- 144

Query: 143 YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              +IG PL   A    + D  + E+    L      +   RPH+AV+  IA  HL+ + 
Sbjct: 145 ---NIGAPLIGFADKGENADMAVVEVSSFQLD----TSETFRPHVAVLLNIAEDHLARYV 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
                  +K  IFE  E      +N  D  F +L+A       K  ++ GK+
Sbjct: 198 DFNAYVRSKGRIFENQEADDVAVINGAD--FHVLQASKGIRSRKLTFNAGKN 247


>gi|160897523|ref|YP_001563105.1| Mur ligase middle domain-containing protein [Delftia acidovorans
            SPH-1]
 gi|160363107|gb|ABX34720.1| Mur ligase middle domain protein [Delftia acidovorans SPH-1]
          Length = 1097

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 159/383 (41%), Gaps = 34/383 (8%)

Query: 83   IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +PV  V D+   L  LA AAR R ++ ++A++G VGKT+T  M+   L          G 
Sbjct: 687  VPVLHVPDMEEGLRNLAQAARRRIQSPVVAVSGCVGKTSTLGMMRQCLQDGGDAR---GD 743

Query: 143  YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA--------- 193
                 G  L +          + EL +  L   R    L+ P I VIT ++         
Sbjct: 744  ALLSQGTALQMINWSEASPCALLELPLQAL---RGDLPLIDPDILVITNLSINNTPHSGE 800

Query: 194  --PAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHA--LGIKTI 247
              P+  +   G E    A  E+ E ++    G+  +  D    E      HA  +G++ I
Sbjct: 801  SEPSGQAGLPG-ERKYEALQEVLEAMQHMHKGSALVT-DQDIGENPSVIEHAKRMGLRLI 858

Query: 248  YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             +FG   NA  +   +   + Q  M     G S++      G+HMA N    L  +  L 
Sbjct: 859  -TFGPHCNAQVREMGFHNGNLQIGMGSLRLGISLQ----SDGHHMALNAQAALAALHALG 913

Query: 308  ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    +L+ + P  G G+     L  G   L+D S + +  SM AA S L  ++PH 
Sbjct: 914  YAPAQVQASLAHWQPMIGAGQPQ--FLPSG-ICLLDHSLSNHLLSMTAAFSQLQSVAPH- 969

Query: 368  EGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              RR+ VL  + + G+ S  +  + L  ++       V L G  +  L  AL   +HV++
Sbjct: 970  VSRRLIVLAGI-QPGQASIDAAQLALEPLVRDAQARRVLLYGEPLRPLAAALGDLLHVNW 1028

Query: 427  SETMDGLFLFIQSSLVDGDVVVV 449
             + ++ L   +  +   GD V++
Sbjct: 1029 YDDLNQLICSLLRTTHKGDTVLL 1051


>gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
 gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
          Length = 476

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 89/221 (40%), Gaps = 37/221 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DS  I      F  + P      FIL A ++G                  IPV+ 
Sbjct: 47  DGIDWDSADIVMTSPVFNPRTP------FILEAQRRG------------------IPVYS 82

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             +V  A      +AR    A  + ITG+ GKT+T EM +  L +       +G    +I
Sbjct: 83  --EVELAWRLRVDSARTGRPAPWVGITGTNGKTSTTEMTSAMLCANGLVAPAVG----NI 136

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G  ++ A +  D D    EL    L      T  +    A IT IA  HL    GIE  A
Sbjct: 137 GKAVSHAAVDPDNDALCVELSSFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYA 192

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI 247
           + K+++F  + +   +  N DD     L + +H A G + I
Sbjct: 193 ADKSKVFRNVRR--ALVFNADDRRVSALASAAHTAEGCRRI 231


>gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
 gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
          Length = 504

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 146/377 (38%), Gaps = 46/377 (12%)

Query: 33  DSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR I       FFA +G   DG D+I  A+  GA  VV   +        ++P  GV  
Sbjct: 27  DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEGFDWNPEWNVPHLGVMG 86

Query: 91  VLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---- 143
            L A      AA     A    +IA+TG+ GKT+  + L  +LS++ K  A IG+     
Sbjct: 87  -LKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLGVTV 145

Query: 144 --NNHIGVP----------LTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N   GVP          + L R+   +         +  S +G  +   + +   + +
Sbjct: 146 FVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPIDVGL 205

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T     HL     +    +AK ++F+  GL+      LN DD        +  A  +KT
Sbjct: 206 FTNFTRDHLDYHHDMASYKAAKRKLFDWPGLKHA---VLNLDDPM-----GRELATALKT 257

Query: 247 IYSFGKS--KNADFQLRKWKQCS---EQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMT 299
             S      +NAD  +   K C      S +E  +     S  +    IG   A N+L  
Sbjct: 258 RISLTGYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNASNVLGV 317

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG++       D A++ L    P  GR ++           +ID  +   P +M+  ++ 
Sbjct: 318 LGVLLAAGIHWDDAVRTLGDLLPPAGRMQQM--GGKNAPLVVID--FAHTPDAMEKGLAT 373

Query: 360 LSQISPHGEGRRIAVLG 376
           L  ++    G+   V G
Sbjct: 374 LRHVANERNGKLWCVFG 390


>gi|56459548|ref|YP_154829.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363510|sp|Q5R0M0|MURC_IDILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56178558|gb|AAV81280.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
          Length = 490

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 181/424 (42%), Gaps = 59/424 (13%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +GA +VVV       N ++VA+   L +PV    ++L  L       R R     IA+ G
Sbjct: 81  EGASVVVVSSAIKADNAELVAA-HQLRVPVVRRAEMLAEL------MRFRHG---IAVAG 130

Query: 116 SVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           + GKTTT  ++ +I   + +     IG   N  G    L     +  + I E   S   +
Sbjct: 131 THGKTTTTSLVASIFAEAGRDPTFVIGGLLNSAGSNARLG----NSKYLIAEADES---D 183

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             FL HL +P +A++T I   H+  + G   ++     E    L   G   +  DD    
Sbjct: 184 ASFL-HL-QPMVAIVTNIEADHMDTYEGDFNKLLDTYVEFLHNLPFYGLAVMCVDDPVVS 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292
            L  +   LG +T+ ++G S+ AD +   +KQ + +S   +  +G K ++V  +  G H 
Sbjct: 242 DLIPR---LGRQTM-TYGFSEAADVRAIDYKQTASESCFTILRKGLKPLDVCLNLPGKHN 297

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + + +    + D AIK  S  +  EG G+R++   + G F + D+  N  P  
Sbjct: 298 VLNALAAVAVATDEGIN-DEAIK--SALNKFEGIGRRFQ---HYGNFAISDKDSNKEPGE 351

Query: 353 M---------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           +          + ++   Q +  G   R  V+         ++  + D   VLS  ++  
Sbjct: 352 VMLVDDYGHHPSEVAATIQAAREGWPERRLVMAFQPHRYSRTRDLYEDFVNVLSQVDVLL 411

Query: 402 -SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   ++  D  +L RSI         Y  T+D +   ++S L  GD+++ + +
Sbjct: 412 MLEVYSAGETPVSGADSRSLCRSIRQRGQIDPVYVATVDDMPEVLESVLAPGDLLLTQGA 471

Query: 453 NSCG 456
            + G
Sbjct: 472 GNIG 475


>gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 556

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 22/218 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGS 80
           V+ ++ DSR       F A+ G   DGHD+I  AV +G  L++      V+   +A +  
Sbjct: 27  VSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGLAG 86

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            ++      D   AL  L  A +     +  +I ITG+ GKTT   +L   ++S      
Sbjct: 87  EAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITGTNGKTTCAYLLEALIASGGGQPG 146

Query: 139 CIGSYN-NHIGVPLTLARM---PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRP 184
            IG+ N  + G  +  A     P  + + + E+   G++H+         ++     V  
Sbjct: 147 VIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRRVAGVEF 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +A+ T ++  HL     +E   +AK  +FE   K G 
Sbjct: 207 DVALFTNLSREHLDYHGDMESYFAAKKRLFEQHLKPGA 244


>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
 gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
          Length = 532

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 143/381 (37%), Gaps = 52/381 (13%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++GI  DSR +   + F    G   DGH F+  A ++GA ++V   ++   IG     V
Sbjct: 24  IISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAVVIVATKEV--EIGESVKAV 81

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-- 141
             V D    L+ LA A   R      ++ ITG+ GKTTT  +L     S+      IG  
Sbjct: 82  VIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGTI 141

Query: 142 SYNNH-------------------IGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
           SY+ H                   +   +   R  V V +     L      EI F    
Sbjct: 142 SYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQDRCKEIDF---- 197

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDS----FFELL 235
               +AV T +   H+      +    AK ++F  +         +N DD     F  L 
Sbjct: 198 ---DVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRKVVNIDDPNAGYFVSLG 254

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             K        + +FG  K+AD      +    ++ + V+    ++E+    +G H   N
Sbjct: 255 NPKV------PVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISSGLLGRHNVYN 308

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  + +   + A ++  ++ +       GR +       Q F  ++D  Y   P ++  
Sbjct: 309 ILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVE--LVDEEQPFAVIVD--YAHTPDALSR 364

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +  + +  P    R I V+G
Sbjct: 365 LLDTVRECGPR---RIITVVG 382


>gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
 gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
          Length = 494

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR +     F A+KG   DG  FI  A++ GA  V+  +      G++    +
Sbjct: 27  VQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASAIELGANAVIAESCEQHLAGTIEYIDT 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV  +  +   L+ LA       +  II +TG+ GKTT  +++   L  I K  A +G+
Sbjct: 87  IPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGTNGKTTITQLIAQWLELIGKKAAVMGT 146

Query: 143 YNN 145
             N
Sbjct: 147 TGN 149


>gi|229118178|ref|ZP_04247537.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
 gi|228665401|gb|EEL20884.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
          Length = 436

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++  A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFADINDVFGAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|223933921|ref|ZP_03625882.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
 gi|223897398|gb|EEF63798.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
          Length = 447

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 27/224 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
           A L S A I+ ITGS GKTTT  M+   L++  K     G    +IG P  ++A+     
Sbjct: 104 AYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCG----NIGYPASSVAQTATAE 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T   RPHIAV+T +  +H+      E+  +AK  I   +   
Sbjct: 160 DTLVMELSSFQL----MGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAE 215

Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             + LN++    + L  + K+  + + T+     +  AD +L                +G
Sbjct: 216 DFVVLNFNQKEAKELAEQTKATVVPLSTLEVVDGAYLADGKLY--------------FKG 261

Query: 279 KS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  M+    G+ G H  +N L T+ +  +L  D     ++LS F
Sbjct: 262 EYIMDADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAF 305


>gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
          Length = 489

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 148/366 (40%), Gaps = 27/366 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   FFA+ G   DG  F+  A+ KGA    +     A I +  + V 
Sbjct: 27  VTGLTADSRVVEPSNLFFALAGVKTDGARFVQEAISKGA--AAIVAASGAGISTDGVAVL 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
             DD   AL ++A A        + A+TG+ GKT+    L    +   +  A +G+    
Sbjct: 85  RSDDPRLALARMAAAFFGPQPRVMAAVTGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVV 144

Query: 144 ---NNHIGV-----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
               +  G      P+ L R+  ++   G+    M   SH  + R L  ++   +A  T 
Sbjct: 145 APGRSEYGSLTTPDPVALHRLLAELASEGVTHAAMEASSHGLDQRRLDGVML-SVAGFTN 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIYSF 250
           +   H+     +E+  +AK  +F+ L   G   + + DD + E     +   G + + + 
Sbjct: 204 LGRDHMDYHPTMEDYMAAKMRLFDTLLPKGAPAVIFADDPWSEQAVEVAERAGAR-VLTV 262

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G+ K     L++ +    +   EV L G+  E+     G     N L+  G+        
Sbjct: 263 GR-KGGFLSLKRVEHLRHKQIAEVHLDGRIFEIHVPLAGDFQISNALVAAGMAIATGTGA 321

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D A+ AL       GR      +   G    +D  Y   P +M+   +VL  + P   GR
Sbjct: 322 DQAMAALEHLTGASGR-LELVGSTGDGAPAYVD--YAHKPEAME---NVLDAVRPFTTGR 375

Query: 371 RIAVLG 376
            I V G
Sbjct: 376 IIMVFG 381


>gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
 gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
          Length = 503

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 163/409 (39%), Gaps = 51/409 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           GI P G    +  DSR I  +    FFA +G   DG ++I  A++ GA  VV  +     
Sbjct: 16  GICPNG---QLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESSDFEW 72

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +   GV  +      +A A   +  RS  +IIA+TG+ GKT+T + +  ALS + 
Sbjct: 73  NPDWKVDHLGVVGLKANAGPIADAFYGSPARS-MSIIAVTGTNGKTSTTQWIAQALSRLG 131

Query: 135 KTYACIGSY------NNHIGVP----------LTLARMPVDV---DFGIFELGMSHLGEI 175
           +  A IG+       N   G            + L R+  D+   +     +  S +G  
Sbjct: 132 RKTAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGID 191

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +   + +   IA+ T     HL     +    +AK  +F G +      +N DD+    L
Sbjct: 192 QGRLNGLTIDIALFTNFTRDHLDYHHDMASYKAAKRRLF-GWKGLKHAVVNLDDAMGIEL 250

Query: 236 KAKSHALGIKTIYSFGKSKNADF------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            ++  +    T YS   ++ AD        +R      E     ++      ++    IG
Sbjct: 251 ASELKSKMALTGYSINGAR-ADIPVLNAVDIRNRTHGDE---FRIESPYGDSKIRTQLIG 306

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L  LG++     D D+A+++L+      GR +  +    +    +ID  +   
Sbjct: 307 RFNVSNVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQ--QMGGKEAPLVVID--FAHT 362

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--------GDMCEMGELSQSFHI 390
           P +++  +S L  ++    G+   +         G   EMGE ++S  +
Sbjct: 363 PDALEKGLSTLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKAESADV 411


>gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC
           17616]
 gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY      + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +A    DAL R++         + ET+D L   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 489

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 34/304 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYAC 139
           +IPV    D+LG L        L     ++ I G+ GKT+T  M  +AL +  +  ++A 
Sbjct: 106 NIPVIRRSDLLGEL--------LEGHRQVL-IAGTHGKTSTTSMAVVALQAAGMDPSFA- 155

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           IG   N  G   T A       F + E   S    +R+      P IAV+T I P HL  
Sbjct: 156 IGGQLNKAG---TNAHQGTGEAF-VAEADESDASLLRYT-----PEIAVVTNIEPDHLDF 206

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-------- 251
           F   E       +  + L   GT+ +  DD     L  ++ A GI  +  +G        
Sbjct: 207 FKTPEAYFQVFEDFADRLTPGGTLVVCLDDPGAAALGERAVARGINAV-GYGTVDAVAAH 265

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +      +   +  +E ++  + + G+ +E++    G HM  N    L    +L AD+D
Sbjct: 266 PTVPVKATILSSRVVAEGTYAVLDIDGREVEIILQIPGNHMVLNGAAALLSGYLLGADLD 325

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAI-SVLSQISPHGE 368
                LS F     R + Y   +  G F    + + Y  +P  ++A + +   ++   GE
Sbjct: 326 KLAAGLSDFSGVRRRFE-YHGTVRGGQFDGASVYDDYAHHPTEVEAVLKAARERVDAAGE 384

Query: 369 GRRI 372
           GR I
Sbjct: 385 GRVI 388


>gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
 gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
          Length = 492

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 156/379 (41%), Gaps = 47/379 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +++DSR +     F A+ G    G +FI +A++ GA  V+ +    A+   ++  V 
Sbjct: 19  ITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD----AAGARIAADVL 74

Query: 87  GVDD--VLGALNKLAVAARLRS------KATIIAITGSVGKTTT--------KEM----L 126
              D  V+ A +     A+  S         ++A+TG+ GKT+         +EM    +
Sbjct: 75  AASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCRQIWEEMGLAGV 134

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLV 182
            +  + ++  +A      +    P+TL R+  +    GI  + M   SH  + R L  +V
Sbjct: 135 NLGTTGVEGAWAY--PLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGLDQRRLDGVV 192

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241
               A  T     HL      E   +AK  +F   L + G   +N DD    ++ A    
Sbjct: 193 LA-AAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGPVVAAICTQ 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNML 297
            G + +   G+S +A  +L   +  +    +    QG+     HH     IG   A+N+L
Sbjct: 252 RG-QEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRP----HHARLALIGGFQAENVL 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+V    AD      ALS      GR +      N G    +D  Y   P +++ A+
Sbjct: 307 LAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRAN-GAAVFVD--YAHTPDAVETAL 363

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L    PH  GR +A++G
Sbjct: 364 KAL---RPHVMGRIVAIIG 379


>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
 gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
          Length = 440

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 61/360 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF   E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWM---EVQLQGKSM 281
           +         HA  ++ + +FG    A F     Q R++    +++ M   E+ L     
Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEHAAQFSVAQHQGREYLFARDEAVMACAELSL----- 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338
                 +G H   N+L  L ++     +   A+ AL     K   G  +RC   A N G 
Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL+ 
Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +    L  F V   K  +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 366 LPVQ---LCCFGVDGDK-FMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419


>gi|229076197|ref|ZP_04209165.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
 gi|229099168|ref|ZP_04230102.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228684396|gb|EEL38340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228707060|gb|EEL59265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
          Length = 436

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++  A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFADINDVFGAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|163942418|ref|YP_001647302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|229013893|ref|ZP_04171021.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229062372|ref|ZP_04199689.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|229135527|ref|ZP_04264312.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|229169419|ref|ZP_04297128.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|229486469|sp|A9VKJ7|MURC_BACWK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163864615|gb|ABY45674.1| UDP-N-acetylmuramate--alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|228614059|gb|EEK71175.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|228647948|gb|EEL03998.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228716941|gb|EEL68627.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|228747562|gb|EEL97437.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 436

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ I ++ +A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFADINDVFNAFQEM--ALQVKKGIIACGDDEELQKVQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 519

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 148/387 (38%), Gaps = 63/387 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P + F A  G   DG   +  A+ +GA   +V  + V +        FG +
Sbjct: 35  LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVEREGVEAF------RFGAE 88

Query: 90  DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT---- 136
            V  AL  L  A  L           +  ++A+TG+ GKT+T   L  AL+ +  +    
Sbjct: 89  GV-AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWLADALNQLAGSGLAA 147

Query: 137 ---YACIGSYNNHIGVPLTLARM------PVDVD----------FGIFELGMSHLGEIRF 177
                 IG+    +GVP  L         PV +            G   +  S +G    
Sbjct: 148 HGGCGLIGTLG--VGVPPELECTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEH 205

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELL 235
               +R  +AV T     HL   +G+     AK+ +F+  GL+      +N DD     L
Sbjct: 206 RLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDWPGLQAA---VVNIDDPRGGEL 262

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH------HGIG 289
              +  L  + I  +  S     +L    Q  + +W E  L+    E V         IG
Sbjct: 263 ---ADTLAQRPIDLWTTSITGPARL----QARDITWGEGGLRFTVAEGVQAHVLQTRVIG 315

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           ++   N+L  +  +  L   ++ A+ A +   P  GR +     +++    L+   Y   
Sbjct: 316 HYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRME----LIHEPDQPLVAVDYAHT 371

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P +++ A+  L  ++    GR   V G
Sbjct: 372 PDALEQALQALRPVAEQRGGRLWCVFG 398


>gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
          Length = 483

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 143/372 (38%), Gaps = 36/372 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR +     F A+ G   DG  F   A+Q GA  V+ + D+      L +P  
Sbjct: 18  ITGVTADSRKVRAGTLFAALPGTKVDGASFAAAAIQAGAAAVIADRDL-----GLPVPTI 72

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   A    A     R     +A+TG+ GKT+         +   +T A +G+    
Sbjct: 73  VAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSASMGTLGVT 132

Query: 147 IGVP------LTLARM--PVDVDFG-----IFELGMSHLG--------EIRFLTHLVRPH 185
           +  P      LT   +  P   D       I  +G+SH          + R L   V+  
Sbjct: 133 VSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRLDG-VKLT 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A    +   HL     +E   +AK  +FE  L + GT  LN  DS      A +  +  
Sbjct: 192 AAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNA-DSDAFPAFAAAAVIAG 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +   G++  A  +L K +   E  W+ +  +G+S +V     G   A N L+  G+  
Sbjct: 251 QWVMPVGET-GATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVAAGLCW 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++     L       GR +R      +G    +D  Y   P  ++   +VL  + 
Sbjct: 310 AAGLTLEEVFAGLEALEGAPGRLQRVGQG-ARGGEAYVD--YAHTPDGLE---TVLKALR 363

Query: 365 PHGEGRRIAVLG 376
           PH  GR I V G
Sbjct: 364 PHVRGRLIVVFG 375


>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 539

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 37/373 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI  DSR + P + F  +KG   DG++F   A++KGA  +V +++++ + G L   V 
Sbjct: 32  ITGIQHDSRLVIPGDLFVCVKGLKSDGYEFAHQAIEKGAVAIVSSSEVLPAEG-LEASVV 90

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D    L+ LA A          ++ ITG+ GK TT  ++     ++      +G+ N
Sbjct: 91  -VEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLIRSIYEAMGLQAGLLGTIN 149

Query: 145 NHIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFL-------THLVRPH-----IAVI 189
            +I     L      P  V        M H G    +        HL R       +AV 
Sbjct: 150 YYINGKKKLEATHTTPDAVHLQKHMASMVHHGTDACIMEVSSHAMHLGRCKEVDFDVAVF 209

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           T +           +E   A  ++F  +   EK   I +N DD   +    + +      
Sbjct: 210 TNLTHDPEDFHKSEDEYKEASGKLFAKMVNPEKHRKI-VNIDDPQSDYFVTQGNQDVPVV 268

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y+ G +KNAD    + +    +S + V+    ++E+    +G H   N+L  + +   +
Sbjct: 269 TYAMG-NKNADVYPLEVQLSLFESELLVRTPRGNLEISSGLLGRHNVYNILAAVAVGIAV 327

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQI 363
            A ++  ++ +       G     RC L    Q F  ++D +    P  +   +  + + 
Sbjct: 328 DAPLEDIVRGIEEVDAVPG-----RCELIDEEQAFAVIVDHA--NTPDGLSRLLDTVREC 380

Query: 364 SPHGEGRRIAVLG 376
            P    R I VLG
Sbjct: 381 GPR---RIITVLG 390


>gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 552

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 22/211 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGS 80
           V+ ++ DSR       F A+ G   DGHD+I  AV +G  L++      V+   +A +  
Sbjct: 27  VSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGLAG 86

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            ++      D   AL  L  A +     +  +I ITG+ GKTT   +L   ++S      
Sbjct: 87  EAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITGTNGKTTCAYLLEALIASGGGQPG 146

Query: 139 CIGSYN-NHIGVPLTLARM---PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRP 184
            IG+ N  + G  +  A     P  + + + E+   G++H+         ++     V  
Sbjct: 147 VIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRRVAGVEF 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            +A+ T ++  HL     +E   +AK  +FE
Sbjct: 207 DVALFTNLSREHLDYHGDMESYFAAKKRLFE 237


>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
 gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
          Length = 509

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 158/384 (41%), Gaps = 47/384 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR + P   F AI+G H DGH FI  A+ +GA  VVV+             V 
Sbjct: 26  VQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVAVPVVV 85

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             D  + AL  LA A       + T I ITG+ GK+TT ++    L++  +    I + +
Sbjct: 86  VADSRV-ALAPLAAAFYDYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGMISTVD 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELG--MSHLGE----------IRFLTHLVRPH------- 185
             IG      R P D      E     + L E          I   +H + P        
Sbjct: 145 FQIGN----RRWPNDTRQSTPEAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVGC 200

Query: 186 ---IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIF--LNYDD---SFFELLK 236
              +AV+  I   HL      E+  + KA++F  L E++G+ +  +N DD   ++F L  
Sbjct: 201 AFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSGSRWAIVNADDPNHAYF-LDA 259

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A + A+ ++    +G  + AD Q +        S + V     + ++     G   A N 
Sbjct: 260 APADAVRLR----YGLHEPADVQGQILHSGPMSSVVRVTSPWGTTDLTVPLPGRFNASNA 315

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   L+  V     A ++   +  RG+       Q F  ++D  Y  NP S +  
Sbjct: 316 LAALTVA--LSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVD--YAHNPDSFE-- 369

Query: 357 ISVLSQISPHGEGRRIAVLGDMCE 380
             + + + P  +GR IAV G   E
Sbjct: 370 -QIFAMLRPQVQGRMIAVFGSAGE 392


>gi|330832323|ref|YP_004401148.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
 gi|329306546|gb|AEB80962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
          Length = 449

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 27/224 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
           A L S A I+ ITGS GKTTT  M+   L++  K     G    +IG P  ++A+     
Sbjct: 106 AYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCG----NIGYPASSVAQTATAE 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T   RPHIAV+T +  +H+      E+  +AK  I   +   
Sbjct: 162 DTLVMELSSFQL----MGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAE 217

Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             + LN++    + L  + K+  + + T+     +  AD +L                +G
Sbjct: 218 DFVVLNFNQKEAKELAEQTKATVVPLSTLEVVDGAYLADGKLY--------------FKG 263

Query: 279 KS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  M+    G+ G H  +N L T+ +  +L  D     ++LS F
Sbjct: 264 EYIMDADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAF 307


>gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
 gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
          Length = 471

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 46/350 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158
           +R K+T+ A+ G+ GKTTT  M+   L +  +  T      I SY ++       AR+  
Sbjct: 105 MRLKSTV-AVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLGA 156

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D+ + E   S    +R         IAV+T I P HL ++   + +  A  E  E + 
Sbjct: 157 S-DWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFVENVP 210

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277
             G   L  D    + +  +      + + ++G S  AD +          +  E  ++ 
Sbjct: 211 FYGAALLCLDHPEVQNILPRVRD---RRVVTYGFSAQADVRGVNVTPIPGGNRFEAIIRH 267

Query: 278 ----GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331
                +S+E +   + G H  QN L  +G+   L  D  T  +    F   + R  K   
Sbjct: 268 RDGSSRSIEGIELPMPGRHNVQNALAAIGVALELGIDDATIQQGFGQFGGVKRRFTKVGE 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382
            A++ G  T+ID+ Y  +P  ++A ++         V++ + PH    R   LG++ E  
Sbjct: 328 IAVDGGVATVIDD-YGHHPVEIRAVLAAAREGARGRVIAVVQPH----RFTRLGNLME-- 380

Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           E   +F+  D   V  +Y      + G    AL + L R  H   +   D
Sbjct: 381 EFQTAFNDADRVLVTPVYAAGEQPIEGVDASALVEGLKRRGHRSTATVAD 430


>gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 136/335 (40%), Gaps = 37/335 (11%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +   +  H +G D ++++      L   N ++VA+  + +IP+         L++  + A
Sbjct: 54  YLGHEASHVEGADLVVYST----ALPKDNVEIVAA-EARNIPI---------LHRSQMLA 99

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL ++   IA+ G+ GKTTT  M+ + +        C       IG  +           
Sbjct: 100 RLMNERKGIAVAGAHGKTTTSSMIALVMEK------CGADPTYIIGGEIMNIGSNAKAGT 153

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221
           G + +  +   +  FL +   P +A++  I   HL N+ G  E +  A A+    ++  G
Sbjct: 154 GEYVVAEADESDGTFLQYY--PTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD++   +     +     + ++G   +AD+Q         +    V  +G+++
Sbjct: 212 KAIVCKDDAYIREMIPYVES----EVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENL 267

Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +   + G H   N L TL I        D    A+  FH   G  +R++         
Sbjct: 268 GKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFH---GAKRRFQVMGEINDIL 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +ID+ Y  +P  + A IS     +    G+RI V+
Sbjct: 325 IIDD-YAHHPTEISATIS-----AAKATGKRIIVV 353


>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
 gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
          Length = 490

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 40/369 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           + G+S  S  +   + F   +G  +D H+ I   ++KGA  VVV  ++      + +   
Sbjct: 25  ITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDLDFPHIQVFDS 84

Query: 84  --------PVFGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                    +F  D   DVL          +  +   I  +  S+G+  +  +LT A+  
Sbjct: 85  RYFEAKVASLFFEDPWKDVL-TFGVTGTNGKTTTTMMIYHMLTSLGERGS--VLTTAVKR 141

Query: 133 IKKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIA 187
           I        SY + I  P     L+ M  + + G   F L +S    ++     VR  + 
Sbjct: 142 I-----LGSSYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVRFDVG 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T I+  HL      E    AK  +F+ L+  G   LN  +S  +    KS  +     
Sbjct: 197 IFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--ESLADAFNRKSRKI----- 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG SKNAD++L   +   E +   ++     ++V    IG   A N    +  +  L 
Sbjct: 250 -TFGTSKNADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIGDFNAYNAAAAIAALHQLG 308

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D      +L  F   EGR +  R A   G   ++D  +  +P +++  +  + +IS   
Sbjct: 309 YDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKIS--- 363

Query: 368 EGRRIAVLG 376
           +GR I V G
Sbjct: 364 QGRVIVVFG 372


>gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis
           HAW-EB4]
          Length = 488

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 21/206 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +++DSR++     F AI G   DG  FI  A ++GA  V+V+TD     G L +   G+ 
Sbjct: 22  LTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVLVHTDSPEEHGKL-VHEAGLQ 80

Query: 90  DVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +   LN+   A+AA+     + +  II +TG+ GKT+  +++        K  A +G+ 
Sbjct: 81  ILFFQLNRQISALAAQAYPLSQVRPQIIGVTGTNGKTSVTQLIAQLQLLQGKQTAVMGTL 140

Query: 144 NNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            N +             P+TL +   + +        + +S  G ++     V   +AV 
Sbjct: 141 GNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEVSSHGLVQGRVEAVPFDVAVF 200

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFE 215
           T ++  HL     ++   +AK  +F+
Sbjct: 201 TNLSRDHLDYHHTMDAYGAAKKRLFQ 226


>gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 138/357 (38%), Gaps = 43/357 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140
           IPV    D+LG          L   +T + I G+ GKT+T  M  +A+ +  +  ++A  
Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N          +   +   G  E+ ++   E        +P++AV+T + P HL  F
Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259
              E       +    +   G + +  +D     L  +S   GIKT+ Y    +  A  +
Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263

Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +         +  +E +   + + G+ + V+    G HM  N    L    ++  DVD  
Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323

Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAISVL-SQISPHGE 368
           ++ LS F    G  +R+    A+  G F    I + Y  +P  + A +S   +++   G+
Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380

Query: 369 GRRIAVLGD--MCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           GR I            E  + F       D A VL +Y      + G     + DA+
Sbjct: 381 GRVIVAFQPHLYSRTIEFQKEFAGALSLADAAVVLEIYGAREQPVDGVSSEIITDAM 437


>gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
 gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
          Length = 492

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 55/296 (18%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAITG+ GK+TT  +++  L+S    Y   G    +IGVP   A+     D  + EL 
Sbjct: 105 NFIAITGTNGKSTTTALISHILNSSGLDYQVAG----NIGVPALQAK--ASKDGYVLELS 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  ++  T      IAV+  I P HL     +    +AK++IF+ ++K     +N D
Sbjct: 159 SFQLDLVKIFT----AKIAVLLNITPDHLDRHQHMNGYIAAKSKIFDRMDKDSYAVINID 214

Query: 229 DSFF-ELLKAKSHALGIKTIYSFGKSK-------------NADF--QLRKWKQCSEQSWM 272
           + +  E+         IK +  F  +K             N +F   +R   Q + +S+ 
Sbjct: 215 NDYCREIFITLQQEQRIKLV-PFSVTKILENCISVVDNKINDNFFDDIRFECQYNSESFR 273

Query: 273 EVQLQGKSME---VVHHGI----------------------GYHMAQNMLMTLGIVSILT 307
           + + QG+  E   V  H +                      G H  +N+  +  +  I+ 
Sbjct: 274 QNEFQGEPAERIKVCEHRLDLQNSLVSNFLNDAVPFNNNLQGTHNDENIAASYAVAKIIG 333

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +    ++++S F     R  +Y C++N       ++S   N  S   +I  L  I
Sbjct: 334 VEPKKILESISGFQSLPHR-MQYICSINN--INFYNDSKATNAISAVQSIKALDNI 386


>gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia
           minopimelate ligase [Stenotrophomonas maltophilia K279a]
          Length = 502

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 154/386 (39%), Gaps = 45/386 (11%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+P      LL   A+ GH         + G+ +DSR++ P  AF AI G    G  F+ 
Sbjct: 1   MSPSMLLSQLLPDVALAGHDP------VLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            A   GA +++      A + + +  I V G+   +GA+      A  RS A ++ +TG+
Sbjct: 55  QARAAGASVILFEPPAPAELPAPADAIAVPGLRARMGAMADQFHGAPSRSMA-MVGVTGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL---ARMPVDVDFGI 164
            GKT+T ++L  A   +      IG+    +           PL L   A +    D G 
Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173

Query: 165 FELGM---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE 218
             + M   SH L + R     V   +AV T +   HL     +    +AKA +F   GL+
Sbjct: 174 RAVAMEVSSHALDQGR--VDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPGLK 231

Query: 219 KTGTIFLNYDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                 +N DD+F    F  L A    +G+ +      + +A  +    +        E+
Sbjct: 232 AA---VINLDDAFGGQLFAGLPAGVQPIGLSSR----GATDASVRAEALQLDGRGIAFEL 284

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            + G+   V    +G     N+L   G +      +    + LS   P   RG+  R   
Sbjct: 285 VIDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPI--RGRMNRLGG 342

Query: 335 NQGFFTLIDESYNANPASMKAAISVL 360
             G  T++ + Y   P +++ A+  L
Sbjct: 343 EDGLPTVVVD-YAHTPDALEQALDSL 367


>gi|160894558|ref|ZP_02075334.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
 gi|156863869|gb|EDO57300.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
          Length = 460

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 133/305 (43%), Gaps = 42/305 (13%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A++G+ GKTTT  ML+ I L +       +G   + IG          ++  G  +  +
Sbjct: 114 VAVSGTHGKTTTTAMLSYIMLEADVDPTISVGGIIDDIGG---------NIRVGSSDYFV 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   E     H   P+I++I  +   HL  FSGIEEIA +         + G + +N D 
Sbjct: 165 TEACEYTNSFHAFSPYISIILNVDADHLDFFSGIEEIAESFHTFATKTPENGKVIVNGDM 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSM-EVVHH 286
            +F+ +   +  L  + I +FG+     +     ++ +    ++  V + G+++ ++  H
Sbjct: 225 KYFDTV---TRDLKCQVI-TFGEDPKNHYSAANIRFDEFGRPTYTLV-IDGENITDITLH 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--- 343
             G H   N L  +   + L  D+D AIKA  + H K G  +R+     +G  T++D   
Sbjct: 280 VFGKHNVYNSLSAIAAATELGIDID-AIKA-GLLHCK-GAERRFEY---KG--TILDNVK 331

Query: 344 --ESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             + Y  +P  + A ++               PH   R  A+  D  ++  LS   H+ +
Sbjct: 332 VMDDYAHHPTEIAATLAAAKNTDYHELWCVFQPHTYSRTYALFDDFAKV--LSVCDHVIV 389

Query: 393 AEVLS 397
           A++ +
Sbjct: 390 ADIYA 394


>gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240355]
          Length = 445

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  K +IF G    G   LN DD+F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDTFCCAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 476

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 40/279 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +       T+  IG   N IG    L         G + + 
Sbjct: 119 IAVAGTHGKTTTTSLIAGILGEGGFDPTF-VIGGRVNSIGANGRLGS-------GEYLVA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-----TGTI 223
            +   +  FL HL +P +AV+T +   H+  + G  +  + KA   E L          +
Sbjct: 171 EADESDASFL-HL-QPLLAVVTNVDADHMGTYGG--DFTALKAAFLEFLHHLPFYGLAVV 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--M 281
            LN D    ELL         + + ++G  ++AD++LR+ K    ++   V   G    +
Sbjct: 227 CLN-DPVLRELLPDIG-----RPVLTYGTCEDADYRLRELKHVQGRTQFRVARPGNDNWL 280

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQ 336
            VV +  G H A N L  + +   L A+ D AI +AL  F    G G+R++C    A  +
Sbjct: 281 TVVLNLPGAHNALNALAAMVVAHELGAE-DAAIQRALEGF---SGIGRRFQCYGEIATPR 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           G   L+D+ Y  +P  + A +  L    P   GRR+ V+
Sbjct: 337 GRVLLVDD-YGHHPRELTATLEALHAGWP---GRRVVVV 371


>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
 gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
          Length = 506

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 31/204 (15%)

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV T +   HL     +++  SAKA++F      G   +N DDS+ E L  +   L  
Sbjct: 208 EVAVFTNLTQDHLDYHQNMDDYFSAKAKLFSSDYLKGRAIINADDSYGERLIQQ---LPT 264

Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-----------YHM 292
           + ++S+  ++ +ADF    W +  + S+    ++G    ++H  +G           Y++
Sbjct: 265 EQVWSYSIQNPSADF----WTK--DLSYEPTGVRG----IMHTPVGEVSFNSPLVGQYNL 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           + N+L  +G V  L  D++    AL+ F    GR +R +    Q    ++D  Y   P S
Sbjct: 315 S-NLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQPEQDISVIVD--YAHTPDS 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++   ++L    P  EG+ I V G
Sbjct: 372 LE---NLLRASRPFIEGKMICVFG 392


>gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8]
          Length = 479

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 159/387 (41%), Gaps = 45/387 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   L  + +  T+         IG  L  A     +  G + + 
Sbjct: 108 IAVAGTHGKTTTTSLIASILGEAGMDPTFV--------IGGKLEAANANAKLGTGDYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P +AV+T I   H+  +    E++ SA  E  + L   G   +  
Sbjct: 160 EADESDASFL-HLT-PVMAVVTNIDQDHMDTYEHSFEKLKSAFVEFLQQLPFWGMAVVCV 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSME--V 283
           DD+   E+L   +     K + ++G S++A  + +  +    +    VQ + G + E  V
Sbjct: 218 DDANIREILPRVT-----KPVMTYGLSEDARIRAKNVRADDGKMHFTVQRINGVTTEFDV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQ 336
             +  G H   N L  + I S L       IKAL  F     R +RY       R A + 
Sbjct: 273 TLNLPGNHYVLNALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEVPAMPRNAASA 332

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTLID+ Y  +P  M+A I+      P+   RR+ +             F  D   VL
Sbjct: 333 GTFTLIDD-YGHHPVEMQAVIAAARGAFPN---RRLVMAFQPHRYTRTRDCFE-DFVRVL 387

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           S  ++   + V+ +G   +   D  +L R+I V       + ET D L   I       D
Sbjct: 388 SSADVVLLTEVYSAGEASIVAADTRSLIRAIRVAGKVEPLFVETTDELPQAILDIAHADD 447

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           VV+V  + S G   L    L+   A Q
Sbjct: 448 VVIVMGAGSIGQVALKTKELQAAKASQ 474


>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 780

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 54/383 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           + GI  DSR +   + F    G   DGH ++  A ++GA  VV +   D+  ++G  ++ 
Sbjct: 267 ITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 326

Query: 85  VFGVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLT---IALSSIKKTYAC 139
           +  V+D    L  L+ A  +  SK   +I I+G+ GKTTT  ++     A+      ++ 
Sbjct: 327 I--VEDTNAVLPALSAAFYKYPSKNMAVIGISGTNGKTTTAYLIKGMYEAMGLRTGMFST 384

Query: 140 IGSY---NNHIGVPLT----------LARM------PVDVDFGIFELGMSHLGEIRFLTH 180
           +  Y   +N +  P T          +A+M       V ++     L      E+ F   
Sbjct: 385 VAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAVVMEASSHGLASGRCDEVDF--- 441

Query: 181 LVRPHIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLK 236
                IAV T +   HL +F G  EE   AKA++F  +   E+   I +N DDS      
Sbjct: 442 ----DIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDPERHRKI-VNIDDSNASFFI 496

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+ +   +  +    ++K+AD    K++    ++ + V      +E+    +G H   N+
Sbjct: 497 AQGNP-DVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 555

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353
           L  + +   + A ++  ++ +       G     RC L    Q F  ++D  Y   P  +
Sbjct: 556 LAAVAVGIAVGAPLEDIVRGIEEVDAVPG-----RCELIDEEQAFGVIVD--YAHTPDGL 608

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
              +  + ++ P    R I V+G
Sbjct: 609 SILLDSVRELKPK---RIITVIG 628


>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
 gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
          Length = 503

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 104/280 (37%), Gaps = 26/280 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL AI+   +       V  ++ DSR +     FFA+ G H DGH F+  A+ +GA  VV
Sbjct: 8   LLDAIKPEEVRGGGDPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAVAVV 67

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              ++ +    +            +               +  +TG+ GK++T   +   
Sbjct: 68  HERELPSYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVTGVTGTDGKSSTTYFIYQL 127

Query: 130 LSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDF------GIFELGMSHLGEIRFLTH 180
           L +      CI +     G    P  L +   +  F       + E G +H   +   +H
Sbjct: 128 LRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTH-AVVEATSH 186

Query: 181 LVRPHIA----------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + P  A          V+T I   H+      E+    K  +F GL + G   LN DD 
Sbjct: 187 GLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEGGKAVLNLDDP 246

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
               L  ++ A G+   Y  G  + A    R W +  E+S
Sbjct: 247 SSGFLAERTRA-GVWG-YGLGTREGA----RLWAEVREES 280


>gi|158334963|ref|YP_001516135.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
 gi|189028946|sp|B0CCD6|MURC_ACAM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158305204|gb|ABW26821.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
          Length = 487

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 161/413 (38%), Gaps = 67/413 (16%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG 141
           P+F   DVL AL        ++     IAI G+ GKTTT  ++   L  +S+  T    G
Sbjct: 101 PIFHRSDVLAAL--------MQEFPQSIAIAGTHGKTTTSSLVGYLLLQASLDPTIIVGG 152

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G   T    P    + + E   S    ++F      PHI VIT I   H  +++
Sbjct: 153 EVAAWGGNART-GESP----YLVAEADESDGSLVKFF-----PHIGVITNIELDHPDHYT 202

Query: 202 GIEEIASAKAEIF-EGLEKTGTIFLNYD-----DSFFELLKAKSHALGIKTIYSFGKSKN 255
            ++++ S    IF E ++   T+ ++ D     D F  L   +S        YS     +
Sbjct: 203 SLDQVVS----IFQEFVDHCHTLIVSVDCPTIADRFLALATDQS-----MITYSLSSKVS 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD+ ++      + + +EV  +G+S+  +    +G H   N L  + +   +  +     
Sbjct: 254 ADYTVQNIDYSGQGTIVEVLERGESLGQLELPLLGEHNLSNALAAVAVGRYVGLEFPAIA 313

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------------- 358
           KAL  F    G  +R+          LID+ Y  +P+ ++  ++                
Sbjct: 314 KALRTF---SGAKRRFEIYGEAQGICLIDD-YAHHPSEIQVTLASAKLQAQAAAATYSQS 369

Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD 416
            V++   PH   R            E SQSF   DL  V  +Y+         +   L D
Sbjct: 370 RVVAVFQPHRYSRAATFF------QEFSQSFQDADLVVVTDIYSAGEANPGTINGKKLAD 423

Query: 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           A+  +   V +  T+  +  F+Q  L  GDVV+   +      R+I  LL  F
Sbjct: 424 AIAANHSVVTFQPTLTNVIDFLQGHLQSGDVVLFLGAGD--LNRIIPDLLTHF 474


>gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus]
          Length = 450

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 418

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 146/384 (38%), Gaps = 43/384 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L+Q +  + +       ++ I +DSR +     FF IKG   DGH F   AV KGA 
Sbjct: 3   LQQLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFAQEAVNKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----------------VAARLRSKAT 109
            ++    +      +++PV  V D + A+  LA                       +   
Sbjct: 63  AIISEKPL-----DVAVPVIVVPDTMRAMAILADVFFQQPTHKLHLIGVTGTNGKTTTTH 117

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168
           II       +  T  + TI +    KTY    +  + + +  +  +M  + VD  + E+ 
Sbjct: 118 IIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQMVENKVDTVVMEVS 177

Query: 169 MS--HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220
               H+G +          +AV T +   HL     +EE   AK+ +F        L K 
Sbjct: 178 SHALHMGRVYGCDF----DVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSLGNSYNLAKP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   ++ K  + A     + ++G ++ +D + +  K  ++ +  ++    K 
Sbjct: 234 KYAVLNADDPASDIYKRATAA----QVITYGINETSDIRAKNVKTSAKGTTFDLVYDNKV 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    +G     N+L  +    +    ++T I  +       GR +       Q F  
Sbjct: 290 VPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFEAIEAG--QDFTV 347

Query: 341 LIDESYNANPASMKAAISVLSQIS 364
           ++D  Y   P S++  +    Q+S
Sbjct: 348 IVD--YAHTPDSLENVLKTTKQLS 369


>gi|251797876|ref|YP_003012607.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
 gi|247545502|gb|ACT02521.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
          Length = 473

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S A II ITGS GKTTT   +   L          G    +IG+PL  A      D  I 
Sbjct: 110 SAAPIIGITGSNGKTTTTTWIGKLLGEAGLNPIVAG----NIGIPLCEAAAEATKDNWI- 164

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
              ++ L   +   T   RP IA++  IA  HL    G+E+  ++KA++F          
Sbjct: 165 ---VAELSSFQLKGTSSFRPRIALLLNIAETHLDYHGGMEDYVASKAKLFANQTADDVAV 221

Query: 225 LNYDDS 230
           LN+DD+
Sbjct: 222 LNWDDA 227


>gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
          [Halothermothrix orenii H 168]
 gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
          [Halothermothrix orenii H 168]
          Length = 480

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
          I+ DSR + P  AF AI G   DGH+FI  A+ KGA ++    ++ +  G   IP+  V 
Sbjct: 15 ITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEIKSRSG---IPIVRVK 71

Query: 90 DVLGALNKLA 99
          D    L KLA
Sbjct: 72 DSRSILGKLA 81


>gi|229019918|ref|ZP_04176714.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
 gi|229026149|ref|ZP_04182520.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228735158|gb|EEL85782.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228741383|gb|EEL91587.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
          Length = 436

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +   L+IPV      LG          L ++ T +A+TG+ GKT+T  +L   +    
Sbjct: 77  IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192
            T   IG    H GV         +  + +FE       E R  FL++   P  A++T I
Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F+ + ++ +A  E+   L+    I    DD   + ++AK   +     Y FG 
Sbjct: 172 DFDHPDYFTDVNDVFNAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311
            ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L  + +      DV+
Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDHSVLNALAVIALCHYENVDVE 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                L+ F   EG  +R+      G   +ID+ Y  +P  + A I    Q  P  E
Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335


>gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
          Length = 449

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     ++
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEARPDEY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 163 LITELSSFQLLGIE----KYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRHLIESENLKAKT 238


>gi|238060247|ref|ZP_04604956.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237882058|gb|EEP70886.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 488

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 10/195 (5%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP++++IT I   HL+ +  +  + +A AE     ++ G I    DD     L     A 
Sbjct: 187 RPYLSLITNIEADHLNTYGDLATLEAAFAEFARLTDRRGFIVTCADDPGGRRLAQTLRAE 246

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301
           G + ++++G++ +AD +L +    ++      ++ G+S+      + G HM  N    + 
Sbjct: 247 G-RRVHTYGEAADADLRLSEIVSSAQGVRYLAEIDGRSLGEFRLPVPGRHMGLNSASAVL 305

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVL 360
              +L   V+ A  AL+ F    G  +R+ R  +  G   L+ + Y  +P SM  A+  L
Sbjct: 306 TAYLLGLPVEAAEAALAAF---PGVRRRFERKGVADG--VLVYDEYAYHPTSMTLALQTL 360

Query: 361 SQISPHGEGRRIAVL 375
            +++  G+GR I V 
Sbjct: 361 REVA--GDGRLIVVF 373


>gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 513

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 148/362 (40%), Gaps = 39/362 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIG 79
            +  IS+DSR +     F A+     +    +  A+ KGA  V+++ D        A + 
Sbjct: 29  MLTDISMDSRRVTAGGLFLALAKDEAERQKHLHQALDKGAFAVLIDADKPLTQTETAMLN 88

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135
              +  + V ++  +    ++AAR   +     T+IA+TG+ GKT+  + +   L +  K
Sbjct: 89  EAVVSAYPVKNL--SQQAGSIAARFYQQPSQHMTVIAVTGTNGKTSVSQFIAQVLEADGK 146

Query: 136 TYACIGSYN-------NHIGV----PLTLARMPV-----DVDFGIFELGMSHLGEIRFLT 179
               IG+            G+    P+++ R+         ++ + E     L + R   
Sbjct: 147 PCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEGCEYVVLEASSHALEQGRL-- 204

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAK 238
           + V  ++AV+T ++  HL     + + A AK  +FE +       +N  DSF   L+ A 
Sbjct: 205 NSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFE-MGSVSRAVINACDSFGRTLMNAL 263

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              + + T   +  S  AD      +   +    ++ + G+  +     +G     N L 
Sbjct: 264 RSDIQLLT---YSSSDQADVSASAIQCHRDGMQFDLAIHGQQQKTTLPVLGRFNVDNALA 320

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           TLG++  +      A +ALS      GR + Y   ++     +ID  Y   P +++ A+ 
Sbjct: 321 TLGVLLSIGYQPSQARQALSQCRAVAGRMEAY--GVDGQPMLVID--YAHTPDALEQALR 376

Query: 359 VL 360
            L
Sbjct: 377 TL 378


>gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
          Length = 563

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 29/160 (18%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           + G VP   V G S+DSR++ P + + A+ G +  G  F   AV+ GA  V+ +    A 
Sbjct: 24  AAGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLTDAAGAAV 83

Query: 78  I----GS-----------------------LSIPVFGVDDVLGALNKLAVAARLRSKA-- 108
           I    GS                         +P+  VDD    L +LA A      A  
Sbjct: 84  IRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIYGDPGADL 143

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           T++ ITG+ GKTTT  +L  AL ++  +   IG+    +G
Sbjct: 144 TMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVG 183


>gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
 gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
          Length = 493

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 22/213 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F++ +++DSR+I   + F A+ G   DG  FI  A+ +G   V+V+TD +   G +  
Sbjct: 18  QTFLD-LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGVTAVLVHTDSIEEQGKVIT 76

Query: 84  PVFGVDDVLGALNK-LAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              GV      L K ++  A +R          I+ ITG+ GKT+T ++    ++ ++  
Sbjct: 77  TEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGK 136

Query: 137 YACIGSYNNHIGVPL-----------TLARMPVD-VDFGIFELGM--SHLGEIRFLTHLV 182
            A +G+  N +   L           TL R   +    G+    M  S  G ++     V
Sbjct: 137 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFAGKGVNTCAMEVSSHGLVQGRVDAV 196

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +AV T +   HL     +E  A+AK  +F 
Sbjct: 197 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR 229


>gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 493

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  D+  I P +AF A KG +  G  +I  A++KGA  +VV+ +   +   L +P+ 
Sbjct: 22  IKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAIVVDDENYFNEADLPVPII 81

Query: 87  GVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V + L   A     +        T+IA+TG+ GKTT    +   L+ + K    IG+
Sbjct: 82  WVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVTHFIGQILNQLDKRAMVIGT 139


>gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
 gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
          Length = 499

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 28/274 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  M+  AL  I    +  IG     +G   T AR+     F + E  
Sbjct: 125 LVAVAGAHGKTSTSSMMAHALLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL +   P + VIT I P HL ++        A  +    L K G + L  D
Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSSAAFEQAFVDFTGRLRKGGALVLCAD 235

Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281
           D+      E +  +  A G + I Y FG     D   QL + +    +   +V +     
Sbjct: 236 DAGVKRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295

Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +V H  +     G HM  N    LG   +L  D+   I AL  F    G  +R +    +
Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTF---SGADRRMQPVGER 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + D+ Y  +P  + A +     ++  G+GR
Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383


>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1]
 gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseiflexus sp. RS-1]
          Length = 509

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 160/423 (37%), Gaps = 53/423 (12%)

Query: 7   FHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H++L+ +    H   + P+  + G+  DSR++ P   F A +G H DGH +I  A+++G
Sbjct: 3   LHEILKHLCEPAHMPPVNPE--IAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA------ARLRSKATIIAITGSVG 118
           A  VV      A  G + +P   V +   AL  LA A       R+R    I+ +TG+ G
Sbjct: 61  AAAVVYEDP--AWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMR----IVGVTGTDG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFELGMSHLG- 173
           KTTT  + ++AL +       +G+ +  IG  +    +    P   +       M+  G 
Sbjct: 115 KTTTTFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLRDMAEAGC 174

Query: 174 ---EIRFLTHLVRPH----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--- 217
               I   +H +             IAV T +   HL     +E+    KA +FE L   
Sbjct: 175 SYAVIEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEF 234

Query: 218 -------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                  ++     +N DD    +    +     +  Y+     +AD +    +   +  
Sbjct: 235 NDAAAPFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAV--HAHADVRAEDVRSTRDGL 292

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V     + +      G     N L  L +       ++  + AL        RG+  
Sbjct: 293 RFRVTTPWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERV--PGVRGRME 350

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R    Q F  L+D  Y   P + +    +   + P  EG+ IAV G   E     +    
Sbjct: 351 RIEAGQPFTVLVD--YAHTPGAFEKLFRI---VRPLTEGQVIAVFGSAGERDRAKRPLQG 405

Query: 391 DLA 393
           ++A
Sbjct: 406 EIA 408


>gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
          Length = 552

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 147/382 (38%), Gaps = 46/382 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GI+ DSR++ P + + A+ G    G DF   A   GA  ++ +        +  +PV 
Sbjct: 39  LSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASLGAAAILTDPAGAGPALATGLPVL 98

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYA------ 138
            V D  G + ++A          +  I ITG+ GKTTT  ++   L + ++  A      
Sbjct: 99  VVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSGKTTTAYLIEGGLRAAQEARAKETGEE 158

Query: 139 -----CIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------ 185
                 IG+    IG     +    P   D       M   G +R L   V  H      
Sbjct: 159 IPPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERG-VRALAMEVSSHALVLGR 217

Query: 186 -------IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237
                  +AV   ++P H+   S +E+   AKA++F +   K G +  N+DD +   L  
Sbjct: 218 VDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQLFTKARSKLGVV--NHDDEYGRRLLT 275

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +S       + SF    + D   R         + ++  V  +G+ +       G     
Sbjct: 276 ESEV----PVISFSAEGHPDADWRAEDVIVGSLDSTFTAVGPEGQRISARSPLAGPFNVA 331

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +  ++    D  TA   ++      GR +R      Q +  ++D ++  +     
Sbjct: 332 NTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA--GQPYLAVVDYAHKTD----- 384

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
           A  SVL  +    EGR   VLG
Sbjct: 385 AVESVLRALRKVTEGRLYIVLG 406


>gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           XB6B4]
          Length = 459

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 158/387 (40%), Gaps = 43/387 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           A+    SIP+    ++LG +        + +    IA+ G+ GKTTT  M++  L + K 
Sbjct: 87  AAAKERSIPMLSRAELLGQI--------MDNYNNSIAVAGTHGKTTTTSMISQILLAAKA 138

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                   +  I V   L  +  ++  G  ++ +S   E         P  +VI  +   
Sbjct: 139 --------DPTISVGGILKAIEGNIKVGKSDIFVSEACEYTNSFLHFYPRYSVILNVEAE 190

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F  I++I ++  +     +K G I +N + +++ EL            + +FG + 
Sbjct: 191 HLDFFKDIQDIRNSFRKFAGNTKKDGAIIINGEIENYTELTSGLD-----PQVITFGLND 245

Query: 255 NADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           + D+      + + +  S+  +      M+V  H  G H   N L  + +   L    D 
Sbjct: 246 SCDYYPSDITFDETACASFTAMHHGTPVMDVKLHVPGMHNVSNALAAIALSLDLGISTDA 305

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------I 363
            +  LS F   + R +   C       T+ID+ Y  +P  ++A ++              
Sbjct: 306 ILAGLSAFGGADRRFQYKGCVDG---VTIIDD-YAHHPTEIRATLTAAKNYPHKRLVLAF 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSI 422
            PH   R  A L D  ++  LS +  + LA++ +    +   +S   +LA LK+   +  
Sbjct: 362 QPHTYSRTKAFLDDFADV--LSMADVVVLADIYAAREKNTYDISSRDILAKLKE---KGT 416

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +Y  + + +  F+  + ++GD+++ 
Sbjct: 417 ECYYFPSFEEIEKFLLKNCINGDLLIT 443


>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
           RKU-1]
 gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga petrophila RKU-1]
          Length = 490

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 147/369 (39%), Gaps = 40/369 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           + G+S  S  +   + F   +G  +D H+ I   ++KGA  VVV  ++      + +   
Sbjct: 25  ITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDLDFPHIQVFDS 84

Query: 84  --------PVFGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                    +F  D   DVL          +  +   I  +  S+G+  +  +LT A+  
Sbjct: 85  RYFEAKVASLFFEDPWKDVL-TFGVTGTNGKTTTTMMIYHMLTSLGEKGS--VLTTAVKR 141

Query: 133 IKKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIA 187
           I        SY + I  P     L+ M  + + G   F L +S    ++     VR  + 
Sbjct: 142 I-----LGSSYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVRFDVG 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T I+  HL      E    AK  +F+ L+  G   LN  +S  +    KS  +     
Sbjct: 197 IFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN--ESLADTFNRKSRKI----- 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG SKNAD++L   +   E +   ++     + V    IG   A N    +  +  L 
Sbjct: 250 -TFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYNAAAAIAALHQLG 308

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D      +L  F   EGR +  R A   G   ++D  +  +P +++  +  + +IS   
Sbjct: 309 YDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKIS--- 363

Query: 368 EGRRIAVLG 376
           +GR I V G
Sbjct: 364 QGRVIVVFG 372


>gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 511

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 35/254 (13%)

Query: 19  IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +GI+P        +N IS +S+ +     F  + G + DG  + + A++ GA   ++ + 
Sbjct: 13  VGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAIIGSA 72

Query: 74  MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129
               IGS+    +  ++D L  +    VA    R   K  +I +TG+ GKTT   +L   
Sbjct: 73  AKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132

Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173
           L  + K  A  G+ +N   G                    A +  + +F I E+    + 
Sbjct: 133 LKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230
           + R          A+ T +   HL   S +E     K ++F      EK G   LN DD 
Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGISVLNIDDP 250

Query: 231 F-----FELLKAKS 239
           +     F+L K  S
Sbjct: 251 WISKLSFDLEKGSS 264


>gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis
           MA-4680]
 gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           avermitilis MA-4680]
          Length = 464

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 22/209 (10%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
           +A    L IPV    D L         ARL      IA+ G+ GKTTT  ML ++LS+  
Sbjct: 86  LARAAELGIPVVHRSDAL---------ARLMDGLRPIAVAGTHGKTTTTSMLAVSLSTLG 136

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  +YA  G  +     P + A        G  ++ ++   E     H   P +A++  +
Sbjct: 137 LAPSYAIGGDLD----APGSNAL------HGEGDIFVAEADESDRSFHKYAPDVAIVLNV 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H +N++ ++EI ++     + + + GT+ +  D      L  +  A G++ + ++G+
Sbjct: 187 ELDHHANYASMDEIYASFETFVDRITEGGTLVIAADHEGARELTRRVTASGVRVV-TYGE 245

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           S +AD  +        +S +EV L G  +
Sbjct: 246 SADADVCVLSVTAQGLKSEVEVLLDGTEL 274


>gi|291276690|ref|YP_003516462.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
 gi|290963884|emb|CBG39720.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
          Length = 490

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 113/278 (40%), Gaps = 24/278 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           IIAIT S GKT+ K  L   L +  + YA   S N   G+   +   +P   +  I E G
Sbjct: 167 IIAITASYGKTSIKNFLYQILRTQYQVYATPRSVNTIKGIVSDINENLPPHTEIYIVEAG 226

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNY 227
               G+I  + HL+     +I  +   HL  F  +E I   K   FE LE     F L +
Sbjct: 227 ARQKGDIAEIAHLLNHQYGIIGEVGEQHLEYFKKLENIMQTK---FELLESNRLEFALIF 283

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D+ F    +K+     K I  F        +LR  +   E++  E++++        + 
Sbjct: 284 KDNTFPQYLSKN-----KKIQYFPT------ELRNEQANLEETSFELEIEQNFYTFKTNI 332

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+   + +   L   + T  + L    P   R    +  +N     ++D S+N
Sbjct: 333 LGAFNIHNLSAAILLGHHLKIPIPTMQRVLGTLQPIPHRLT--KEVVNGK--MILDSSFN 388

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            N   M  ++    +I+   +GR++ +   + E  E S
Sbjct: 389 GNLNGMLESV----RIAGLYDGRKVIITPGIIESDEKS 422


>gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
 gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
          Length = 469

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 187/438 (42%), Gaps = 47/438 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +   K  H  G D ++    + + +   N ++VA+   + IPV         + + A+ A
Sbjct: 64  YLGHKAEHIKGADVVV----RSSAVEWNNPEIVAAREQM-IPV---------IPRAAMLA 109

Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            L      IA+ G+ GKTTT  +++  +A   +  ++  IG   N +G+   L + P   
Sbjct: 110 ELMRFRHGIAVAGTHGKTTTTSLVSSVLAEGGLDPSF-VIGGKLNSLGINAQLGQSP--- 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
            + + E   S   +  FL   ++P +A++T I   H+  + +  E++ +   E    L  
Sbjct: 166 -YFVVEADES---DASFL--FLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPF 219

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G+  +  DD   E+ K        +   ++G ++ A ++   W Q    S   V ++ K
Sbjct: 220 YGSAVVCIDDP--EVRKILPFIE--RPTLTYGFTEEAHYRAIDWTQNELISEFTV-IRPK 274

Query: 280 S---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           S   +++     G H   N L ++ I + L  D ++ I+AL  F   +G G+R++    +
Sbjct: 275 SYSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKF---QGVGRRFQMLGEK 331

Query: 337 GF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID 391
            F     L+ + Y  +P  + + I     + P+     +          EL + F   + 
Sbjct: 332 KFEKGSALVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVLS 391

Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           LA+ L L++I       + G +  +L + +  +           L   +  S+ +GDV++
Sbjct: 392 LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVIL 451

Query: 449 VKSSNSCGFYRLINLLLE 466
           ++ + S G    +NL+ E
Sbjct: 452 IQGAGSIGQI-AVNLMQE 468


>gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
 gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
          Length = 458

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 92/438 (21%), Positives = 185/438 (42%), Gaps = 47/438 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +   K  H  G D ++    + + +   N ++VA+   + IPV         + + A+ A
Sbjct: 53  YLGHKAEHIKGADVVV----RSSAVEWNNPEIVAAREQM-IPV---------IPRAAMLA 98

Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            L      IA+ G+ GKTTT  +++  +A   +  ++  IG   N +G+   L + P   
Sbjct: 99  ELMRFRHGIAVAGTHGKTTTTSLVSSVLAEGGLDPSF-VIGGKLNSLGINAQLGQSP--- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
            + + E   S   +  FL   ++P +A++T I   H+  + +  E++ +   E    L  
Sbjct: 155 -YFVVEADES---DASFL--FLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPF 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G+  +  DD        K      +   ++G ++ A ++   W Q    S   V ++ K
Sbjct: 209 YGSAVVCIDDPEVR----KILPFIERPTLTYGFTEEAHYRAIDWTQNELISEFTV-IRPK 263

Query: 280 S---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           S   +++     G H   N L ++ I + L  D ++ I+AL  F   +G G+R++    +
Sbjct: 264 SYSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKF---QGVGRRFQMLGEK 320

Query: 337 GF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID 391
            F     L+ + Y  +P  + + I     + P+     +          EL + F   + 
Sbjct: 321 KFEKGSALVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVLS 380

Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           LA+ L L++I       + G +  +L + +  +           L   +  S+ +GDV++
Sbjct: 381 LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVIL 440

Query: 449 VKSSNSCGFYRLINLLLE 466
           ++ + S G    +NL+ E
Sbjct: 441 IQGAGSIGQI-AVNLMQE 457


>gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 488

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 21/223 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           +N +++DSRS+     F AIKG   DG  FI  A+  GA  V+   D       +S    
Sbjct: 19  LNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQNQ 78

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IPV     +   L+ +A           T++ +TG+ GKTT  ++L      + +  A +
Sbjct: 79  IPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPAVM 138

Query: 141 GSYNNHI------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHI------- 186
           G+  N +          T + + V      F    +    I   +H LV+  I       
Sbjct: 139 GTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHFAA 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            + T ++  HL     +E  ASAK  +F  L     I +N DD
Sbjct: 199 GIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKI-INADD 240


>gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 154/385 (40%), Gaps = 67/385 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ GS GKTTT  ++++ L            Y+     P  L    +D   G   +G S
Sbjct: 112 VAVAGSHGKTTTTSLISVILDR--------AGYD-----PTVLVGGEIDAIGGNVRVGKS 158

Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                 F+T             P+IAVI  +   HL  F  I+ I  +  +    +   G
Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPSDG 214

Query: 222 TIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQL 276
            +    DD+    ++K        K I ++G ++ +D+Q +      K C+      V  
Sbjct: 215 FVVACKDDANTMHVIKGLE-----KNIVTYGINEKSDWQAKDITYDEKGCAS---FNVYY 266

Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +GK +      I G H   N L +L +  +L  D + A + +  F   +G  +R+     
Sbjct: 267 RGKFIGHFKLSIPGKHNIYNALASLAVTYLLGVDTEKAKEYIKEF---KGTHRRFEVKGV 323

Query: 336 QGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               T++D+ Y  +PA + A +          +++   PH   R  A+L D  E      
Sbjct: 324 VEGVTVVDD-YAHHPAEIHATLEAAKNYPHKRIIAIFQPHTYSRTKALLSDFAE------ 376

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLV 442
           SF  D A+ + + +I         +++ KD +     R   V Y +  D +  +++ +  
Sbjct: 377 SF--DAADKIIITDIYAAREKDTGIVSSKDLVDLIFKRGKDVLYIKDFDSIVEYLKENTE 434

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
           +GD+V+  +  +   Y +    LEE
Sbjct: 435 EGDLVL--TIGAGNIYEVGEKFLEE 457


>gi|305664536|ref|YP_003860823.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
 gi|88708553|gb|EAR00789.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
          Length = 444

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 34/184 (18%)

Query: 62  QKGAGLVVVNTDMVASIGSL--SIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +K +  V++N D+V     +  ++P+     + ++  ++++  AAR    ATII ITGS 
Sbjct: 53  EKHSKSVILNADVVMKSPGIPDTVPLIKELKEKLIPVISEIEFAARYID-ATIIGITGSN 111

Query: 118 GKTTT---------KEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           GKTTT         +E L + ++ +I  ++A + + N+H    L ++   +D   GI + 
Sbjct: 112 GKTTTTMLTNHIFKEEGLDVGMAGNIGDSFAKMVAENDHDNYVLEISSFQLD---GINDF 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
                          RPHIA+IT I P HL  +    E   ++K  I E   K   +  +
Sbjct: 169 ---------------RPHIAIITNITPDHLDRYEYKFENYVASKFRIAENQSKEDYLIYD 213

Query: 227 YDDS 230
            DD 
Sbjct: 214 ADDE 217


>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
 gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
          Length = 487

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 156/395 (39%), Gaps = 43/395 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +   ++       V  +  DSR +   + F AIKG   DGH +I  A++ 
Sbjct: 1   MKTLKDILYKVHIEAVTGDTTIAVRELVFDSRKVQLNDVFIAIKGYEVDGHSYIEKAIKA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA + V+  ++  +I +  I    VD+   AL  +A            +I +TG+ GKTT
Sbjct: 61  GA-IAVICEEIPKNIIN-GITYVQVDNGSSALAVMASNYYGNPSENLKLIGVTGTNGKTT 118

Query: 122 TKEML---------------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIF 165
              +L               T+ +    K Y    +  + + +   L +M  + V++   
Sbjct: 119 IATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQKMNHEGVEYCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R    + +    + T ++  HL       E    K + F+ L K     +
Sbjct: 179 EVSSHGIHQKRTAGLVFQG--GIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKEAFCLV 236

Query: 226 NYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           N DD       +  KAK +   +KT         AD++     Q  E     + L+    
Sbjct: 237 NIDDKNGLVMMQNTKAKKYTYALKTY--------ADYR----AQILENRLAGLLLKINDN 284

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG   A N+L       +L  +    ++ +S      GR + Y  + N+   T+
Sbjct: 285 EVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFE-YFISKNK-ITTI 342

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D  Y   P ++K  +  ++ I   G  + I V+G
Sbjct: 343 VD--YAHTPDALKNVLETINNIRT-GNEQLITVVG 374


>gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 454

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 146/375 (38%), Gaps = 48/375 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT   LT A+     T     IG   N  G    L  
Sbjct: 98  LAELMRLRKG---IAIAGTHGKTTTTS-LTAAIFDEAGTDPTVIIGGRLNAYGSNARLGE 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                  G F L  +   +  FL   + P + V+T +   H+  +   + I +A      
Sbjct: 154 -------GEFLLAEADESDGSFLC--LSPVVNVVTNVDLDHVDFYHDQQAIDTAFINFMN 204

Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWM 272
            +   G   +  DD+    L  + K   L     Y FG     D QLR +   C E S  
Sbjct: 205 KVPFYGMNVVCGDDAGVRRLLPQIKRPVL----TYGFGP----DNQLRAETVTCGETSRF 256

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V L G+ + EV     G H   N L  +G+        D  ++ L+ F    G G+R+ 
Sbjct: 257 RVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLETGIAADVCLRGLANFR---GVGRRFE 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEM 381
               +G   ++D+ Y  +PA + A ++          ++    PH   R  A+ GD C+ 
Sbjct: 314 RKGERGGVLVVDD-YGHHPAEIAATLATARTCYPGRRLVVAFQPHRFSRTKALFGDFCKA 372

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQS 439
            +     ++D   +  +Y  S   + G    +L   + +  +  V Y +  D +   +  
Sbjct: 373 FD-----NVDKLLLTEIYPASEAPIPGVSGQSLAQGIRQVSNTDVDYFQDFDAMRAALPE 427

Query: 440 SLVDGDVVVVKSSNS 454
           +L  GD+ +   + S
Sbjct: 428 TLRPGDLFLTLGAGS 442


>gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 476

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L S A I+ ITGS GKTTT   +   L +        G    +IG+PL  A    D  
Sbjct: 108 AYLISPAPILGITGSNGKTTTTTWIGNMLEAAGMRPIVAG----NIGIPLCEAAEEADEG 163

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           ++ + EL    L   R      RP +A +  +A  HL     +++  S+KA++F    +T
Sbjct: 164 NWLVAELSSFQLKGTRAF----RPEVACLLNVAETHLDYHGTMDDYISSKAKLFANQRET 219

Query: 221 GTIFLNYDD 229
               LN+DD
Sbjct: 220 DRAVLNWDD 228


>gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
 gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
          Length = 498

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 31/355 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IP 84
           + G+ +DSR++ P  AF AI G    G  F+  A   GA  ++      A + + +  I 
Sbjct: 19  LTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASAILFEPPAPAELPAPADAIA 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V G+   +GA+      A  R+ A ++ +TG+ GKT+T ++L  A   +      IG+  
Sbjct: 79  VPGLRARMGAMADQFHGAPSRAMA-MVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLG 137

Query: 145 NHI---------GVPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPHIAV 188
             +           PL L   A +    D G   + M   SH L + R     V   +AV
Sbjct: 138 AGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGR--VDAVHYDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T +   HL     +    +AKA +F   GL+      +N DD+F   L A   A G++ 
Sbjct: 196 FTNLTRDHLDYHGDMASYGAAKARLFHRPGLKAA---VVNLDDAFGRQLFAGLPA-GVQP 251

Query: 247 I-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I  S   + +A  +    +        E+ + G+   V    +G     N+L   G +  
Sbjct: 252 IGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLLGRFNVDNLLAVAGTLHA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +    + LS   P   RG+  R     G  T++ + Y   P ++K A+  L
Sbjct: 312 QGQPLPRIAEVLSALQPI--RGRMNRLGGEDGLPTVVVD-YAHTPDALKQALDSL 363


>gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 472

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 161/396 (40%), Gaps = 59/396 (14%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-------- 132
           +SIPV    ++L  L +L            IA+ GS GKTTT  M    L+         
Sbjct: 98  ISIPVIPRGELLAELMRLKYG---------IAVAGSHGKTTTTSMAATILNYAGLDPTVV 148

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +      +G  N  +G            DF + E   S   +  FL   + P IAV+T +
Sbjct: 149 VGGRVGTMGGSNARVG----------HSDFLVVE---SDESDGSFLK--LAPIIAVVTNV 193

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL ++  ++ I +A  E    +   G + +  DD+  + L  +   +  +TI ++G 
Sbjct: 194 DREHLDHYPDLDAIRAAFLEFVNKVPFYGAVIVCLDDANVQGLLPE---IRRRTI-TYGT 249

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGIGYHMAQNMLMTLGIVSILTAD 309
           +  AD +      C   +  E +L+ ++ ++     H  G H   N +  + +   L   
Sbjct: 250 TAQADMEAGDIS-CGPFAS-EFRLRYRTADLGRFRLHIPGRHNVLNAMAAIAVAMELEVK 307

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            DT  +AL  F    G  +R++    +    ++D+ Y  +P  ++A +    Q       
Sbjct: 308 PDTIREALETF---SGVDRRFQLRGQERGIAVVDD-YGHHPTEIRATLDGARQCG----F 359

Query: 370 RRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           RRI VL            M E ++SFH  D   V+ +Y  S   + G    +L + + + 
Sbjct: 360 RRIHVLFQPHRYTRTFHLMDEFARSFHQADSLFVMDIYAASEKPIPGVTAESLVERIRQF 419

Query: 422 IH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H  V Y  T+D     + ++  +GD+V+   + S 
Sbjct: 420 GHRGVEYVGTLDRGVDALVAAASEGDLVLTLGAGSV 455


>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
          Length = 480

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 158/389 (40%), Gaps = 37/389 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  IS D+R I     F A KG  YD H+ I   +      V+V      +      P  
Sbjct: 24  VADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLV------TEKEFDFPTI 77

Query: 87  GVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            V +   AL+ ++    +++ +   I +TG+ GKTTT  ++   +       A  G+ N 
Sbjct: 78  VVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTARFGTINY 137

Query: 146 HIGVPLTLARMPVDVDFGIFE-LGMSHLGEIRFLTHLVRPH-------------IAVITT 191
            I   L  +       +  ++ LG++      F+   V  H              A+ T 
Sbjct: 138 KIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEVSSHALDQDRVYGINFNYAIYTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           ++  HL     +++  ++K+++F E L   G +  N DD + + L        I T YSF
Sbjct: 198 LSGDHLDYHKDLDDYFNSKSKLFTEYLNGCGIV--NIDDEYGKKLLYLIKDNEILT-YSF 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +K A+  +  +    +++ + + L G+ +      +G H   N++  +     L  D 
Sbjct: 255 NNNK-ANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAHHLGIDH 313

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +A+  F    GR ++    +    +  ID ++  +     A  +VLS + P  + R
Sbjct: 314 DRITRAIKTFSNVPGRLEK---LIYNNIYIFIDYAHTDD-----ALENVLSSLRPFRKRR 365

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            I + G  C  G+  +S    +A+V   Y
Sbjct: 366 IITLFG--C-GGDRDKSKRPRMAKVAEKY 391


>gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
          Length = 477

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 128/323 (39%), Gaps = 40/323 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           ++ I  DSR I   + F AIKG   +GHD+I  A+  GA + ++  ++ ++I  G   I 
Sbjct: 14  ISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGA-IAIICEELPSNIVNGVTYIK 72

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---------------TIA 129
           V   ++ L  L+             ++ +TG+ GKTT   +L               T+ 
Sbjct: 73  VKDTNEALAFLSA-NYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAGYKVGLLSTVK 131

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +    + Y    +  + + +   L +M     +F   E+    + + R  T  ++    V
Sbjct: 132 IMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKR--TEALQFVGGV 189

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL   +   E    K   F+GL K      N DD        K+ A+ ++   
Sbjct: 190 FTNLSHDHLDYHNTFAEYRDVKKSFFDGLSKDAFAITNIDD--------KNGAIMLQNT- 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIV 303
              K+K   + L+ +     Q  +E QL G        EV    IG   A N+L   G+ 
Sbjct: 241 ---KAKKLSYALKSYADYKAQ-ILENQLSGLLLKINDNEVWVKLIGSFNAYNLLAIYGVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGR 326
             L  D   A++ LS      GR
Sbjct: 297 VELGIDKMEALRLLSELESVSGR 319


>gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
 gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
          Length = 495

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I   E F AI+G   DG  FI  A+ +GA +V+   D     G +     
Sbjct: 27  ISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHVHGQVEFREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I  TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGATGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 143 YNN 145
             N
Sbjct: 147 TGN 149


>gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
 gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVQPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus RF122]
 gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus
           aureus]
 gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus COL]
 gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus RF122]
 gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus 04-02981]
 gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O11]
 gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O46]
 gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
 gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
          Length = 518

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ +S+       F  I+G   DGHD+I  A   GA  +++   +V+    L  P  
Sbjct: 26  IRGITCNSQKAEEDSLFVCIQGSRADGHDYIEEACNLGASCILIEK-LVSGGRMLKFPE- 83

Query: 87  GVDDVLGALNKLAVAARLR-------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            V  VL    + A+A   R        K  +I +TG+ GK+T   M+   L S+ +    
Sbjct: 84  NVAVVLVKDTREALAGISRIWFGSPADKLKVIGVTGTKGKSTVAVMIREMLESLGQKCGL 143

Query: 140 IGSYNNHIG 148
           IG+  +H+G
Sbjct: 144 IGTIAHHLG 152


>gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
 gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
          Length = 518

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 149/392 (38%), Gaps = 73/392 (18%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           D+RS+A  + FFA      D H FI  A+++GA  V+V  +     +    +L++P    
Sbjct: 34  DTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQPEGFSGAIDPSNTLAVP---- 89

Query: 89  DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                ALN+LA  +A+   +  +     + ITG+ GKT+  + ++ AL+++    A IG+
Sbjct: 90  -----ALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184
                     H G      P     +    D G   + M       H G +         
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF---- 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV T +   HL      E   +AKA +F   E    + +N DD+    L A +     
Sbjct: 201 DIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTQGHAR 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNML 297
              Y     + A           +    +  L   ++     G  +H+       A+  +
Sbjct: 260 TIAYGLDSEQGA---------LQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEV 310

Query: 298 MTLGIVSI----------LTADV--DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDE 344
            TLG  ++          L ADV  + A+  L+   P  GR +R    L N     +ID 
Sbjct: 311 QTLGAFNVSNLLGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVID- 369

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P +++  +  L  ++    G  I + G
Sbjct: 370 -YAHTPDALEKTLEALRPMAAARGGELICMFG 400


>gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
 gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
          Length = 449

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|225019925|ref|ZP_03709117.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
 gi|224947289|gb|EEG28498.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
          Length = 463

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I A+TGS GKTTT  +++  L +          YN H+G  +  A +P   + G  ++ +
Sbjct: 119 IYAVTGSDGKTTTTTLISEMLKA--------QDYNVHLGGNIGKALLPGIEEIGPDDVAV 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + L+    P +AVIT IAP HL     +EE    K  +           LN D+
Sbjct: 171 VELSSFQLLSMRQSPDVAVITNIAPNHLDVHGTMEEYIQCKCHLLWHQNAFSKAVLNADN 230


>gi|159038978|ref|YP_001538231.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
 gi|189029031|sp|A8LX80|MURC_SALAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157917813|gb|ABV99240.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
          Length = 511

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 8/196 (4%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP +++IT I   HL+ +  +  + +A A+     +  G +    DD+    L     
Sbjct: 185 IYRPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFVVTCADDAGSRRLAETLR 244

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
           A G + +Y++G S +AD +L +    +       ++ G+S+      + G HM  N    
Sbjct: 245 AEG-RRVYTYGTSTDADLRLTEMASSTRGIRYLAEVDGRSLGEFRLPVPGRHMGLNSASA 303

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +L   +D A  AL+ F     R +R   A N     L+ + Y  +P  +  A+  
Sbjct: 304 VLAAYLLGLPLDAAEAALAAFPGVRRRFERKGVADN----VLVYDEYAYHPTPIALALRT 359

Query: 360 LSQISPHGEGRRIAVL 375
           L +++  G+GR I V 
Sbjct: 360 LREVA--GDGRLIVVF 373


>gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
 gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
          Length = 486

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  K   +G + I ++G S +AD +L  ++Q   Q    +  
Sbjct: 221 LPFYGHAVMCLDDAVIRELLPK---VG-RHITTYGFSDDADVRLADYRQVGAQGLFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QGK  + V  +  G H A N    + + +    D D  ++AL+ F   +G G+R+
Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEQGIDDDAILRALARF---QGTGRRF 328


>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
 gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
          Length = 507

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 143/381 (37%), Gaps = 52/381 (13%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++GI  DSR +   + F    G   DGH F+  A ++GA ++V   ++   IG     V
Sbjct: 24  IISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAVVIVATKEV--EIGESVKAV 81

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-- 141
             V D    L+ LA A   R      ++ ITG+ GKTTT  +L     S+      IG  
Sbjct: 82  VIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGTI 141

Query: 142 SYNNH----IGVPLTLA---------------RMPVDV-DFGIFELGMSHLGEIRFLTHL 181
           SY+ H       P T                 R  V V +     L      EI F    
Sbjct: 142 SYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQDRCKEIDF---- 197

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDS----FFELL 235
               +AV T +   H+      +    AK ++F  +         +N DD     F  L 
Sbjct: 198 ---DVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRKVVNIDDPNAGYFVSLG 254

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             K        + +FG  K+AD      +    ++ + V+    ++E+    +G H   N
Sbjct: 255 NPKV------PVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISSGLLGRHNVYN 308

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  + +   + A ++  ++ +       GR +       Q F  ++D  Y   P ++  
Sbjct: 309 ILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVE--LVDEEQPFAVIVD--YAHTPDALSR 364

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +  + +  P    R I V+G
Sbjct: 365 LLDTVRECGPR---RIITVVG 382


>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Arthrospira platensis NIES-39]
          Length = 498

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 38/376 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           + G++ +S +  P + F  + G   DG DF   A+  GA   +V+    ++      S +
Sbjct: 24  ITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETDSDT 83

Query: 83  IP-VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           IP V    D+  A  ++A A       T  ++ +TG+ GKTTT  ++   L+++ K  A 
Sbjct: 84  IPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKPTAL 143

Query: 140 IGS-YNNHIGV-PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183
           +G+ Y    G   + +   P  V+              FG+ E+    L + R L    +
Sbjct: 144 LGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQ 203

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV T +   HL     +++   AKA +F      G   +N DD + + L A+   LG
Sbjct: 204 --VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR---LG 258

Query: 244 IKTIYSFGKS-KNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++S+  S  +AD       ++    Q  +   +   S  +    +G +   N+L  L
Sbjct: 259 GDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTPMGSASFSLPL--VGQYNLSNLLAAL 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D+   +  L  F    GR +R + +  Q    ++D  Y   P S++   ++L
Sbjct: 317 GAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQNITVIVD--YAHTPDSLE---NLL 371

Query: 361 SQISPHGEGRRIAVLG 376
               P   GR I V G
Sbjct: 372 KASRPFIPGRMICVFG 387


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156
           ++  I+A+TG+ GKTT   M+     S+ +      +    I   L +         ARM
Sbjct: 502 ARIPIVAVTGTNGKTTCSRMIGHIFKSMGRKVGMTSTDGVVIDDRLVIRSDASGPRSARM 561

Query: 157 PVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKA 211
            +    VDF +FE+     G +R      R  +AV+  +AP HL       +E++A  K 
Sbjct: 562 VLQNPRVDFAVFEVARG--GILREGLGYPRNDVAVVLNVAPDHLGLRGIDTVEQLAQVKQ 619

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLK 236
            I E + K+G+  LN DD     ++
Sbjct: 620 VIVEAVPKSGSAVLNADDPLVAGMR 644


>gi|261405664|ref|YP_003241905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
 gi|261282127|gb|ACX64098.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
          Length = 477

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 29/185 (15%)

Query: 53  GH-DFILHAVQKGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLR 105
           GH D ++H    G  L+V N  +  S+        L IP+         + ++ +A RL 
Sbjct: 63  GHPDELIHP---GVALLVKNPGIPYSVPPVQKAIELEIPI---------VTEVEIAYRL- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
            +A +I ITGS GKTTT   +   L +   +    G    +IG PL+  A    + D+ +
Sbjct: 110 CEAPMIGITGSNGKTTTTTWVGKLLENAGLSPIVAG----NIGTPLSEAAATATEHDWMV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T   RP I+ +  +   HL    G+++  ++KA++F       T  
Sbjct: 166 VELSSFQLKG----TEAFRPRISCLLNVTETHLDYHGGMDDYVASKAKLFANQTSEDTAV 221

Query: 225 LNYDD 229
           LN+DD
Sbjct: 222 LNWDD 226


>gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU144]
          Length = 449

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  I +     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDIFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 161 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218

Query: 223 IFLNY 227
           +  NY
Sbjct: 219 LICNY 223


>gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 495

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 29/253 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A+    +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   V+ 
Sbjct: 6   LRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIA 65

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKT 120
             D  A  G++     IPV  +  +   L+ LA        A LR    +I +TG+ GKT
Sbjct: 66  EADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLR----LIGVTGTNGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDVDFGIFEL--GMSHLGE 174
           T  ++L      + +T A +G+  N     +          VDV   +  L    + L  
Sbjct: 122 TITQLLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAA 181

Query: 175 IRFLTH-LVRPHIAVI-------TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   +H LV+  +A +       T ++  HL     +E    AK  +F     +G   +N
Sbjct: 182 MEVSSHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFS-THHSGEKIIN 240

Query: 227 YDDSFFELLKAKS 239
            DD   +   AKS
Sbjct: 241 ADDEVGQRWLAKS 253


>gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 150/391 (38%), Gaps = 48/391 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +DLL+      +G +    +  I+ D+R +A    F  +KG  +DGH      ++KGA 
Sbjct: 3   LYDLLENNAETKLGNIE---ITSITDDTRKVAEGCLFVCVKGGSFDGHTAAAEMLEKGAA 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV   D+   +G   I       + G +   A       K  +I +TG+ GKTT   ++
Sbjct: 60  AVVCEHDL--GLGDRQILTDNSRRLYGMMCS-AWFGHPEKKLHMIGVTGTNGKTTITNVI 116

Query: 127 TIALSSIKKTYACIGSYNNHIG---------VPLT------LARMP------VDVDFGIF 165
              L         +G+  N IG          P+       L RM       V ++   F
Sbjct: 117 KHILMKNGHKTGLVGTIQNEIGDEIVHTENTTPMAYDLMALLDRMVKAGCEYVVMEVSSF 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L  + +G   F T       AV T +   HL     +E+   AK  +F+  +      +
Sbjct: 177 GLVQNRIGASWFDT-------AVFTNLTQDHLDYHKDMEDYYQAKKMLFDICD---CALV 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + L  +   +G +   SF     AD+     K  S  S       GKS  V  
Sbjct: 227 NIDDEYGKRLYGE---IGCEK-QSFSVKGCADYTADGIKIKSTGSSFWFCKGGKSHLVKC 282

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N+   + +       VD  I A+  ++  +GR +      +   FT+I + 
Sbjct: 283 RMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKGRCEVIPTGRD---FTVICD- 338

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P +++   ++L  +  + + R I + G
Sbjct: 339 YAHTPDALE---NILRSVREYTDNRLICLFG 366


>gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
 gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
          Length = 496

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 128/338 (37%), Gaps = 61/338 (18%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSIP 84
           V+ I+ DSR+      F A KG   D H F  + +++G  +VVVN ++     +  + +P
Sbjct: 23  VDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELELDGEVTQVVVP 82

Query: 85  VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                      + L VA+ L          + T   +TG+ GKT+   M+ +    + K 
Sbjct: 83  -----------DTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKN 131

Query: 137 YACIGSYNNHIG---------VPLTLA------------RMPVDVDFGIFELGMSHLGEI 175
            A +G+    I           P T++                 +   +   G+S LG +
Sbjct: 132 SAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLS-LGRL 190

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSF 231
           R     V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DD F
Sbjct: 191 RG----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDF 246

Query: 232 FELLKAKSHALGIKT---IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  SH L   T   ++++G    A F  +   +  +    +         V    +
Sbjct: 247 -------SHYLASVTPYEVFTYGIDNEAQFMAKNIDESLQGVEFDFSTPFGDYRVKSPYV 299

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           G     N++  +  V    A ++  I A++   P EGR
Sbjct: 300 GRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGR 337


>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
 gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
          Length = 499

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 28/225 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I  DSR +     F  I+G + DGH +I  A++KGA  VV+  D+   + S  I   
Sbjct: 23  IDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKGAVAVVIEKDL--EVYSEDITYI 80

Query: 87  GVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V+D    +G L        L++  ++I +TG+ GKTTT  ++   L         +G+ 
Sbjct: 81  RVNDSRETMGYLASTFYNYPLKN-LSLIGVTGTNGKTTTTYLIKAILEEAGFNTGLVGTI 139

Query: 144 NNHIG---VPLT------------LARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPH 185
            N IG   +P T             ARM   VD G+    M   SH  +++ +  +    
Sbjct: 140 KNIIGDETLPATRTTPESLDLYRLFARM---VDSGVTHAVMEVSSHALDLKRVEGM-EFK 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           I V T I+  HL     ++E   AK+ +F  LE  G   +N DDS
Sbjct: 196 IGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPGGWAVVNIDDS 240


>gi|34763168|ref|ZP_00144135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887166|gb|EAA24270.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 305

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 40/280 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D +++  +EA       H DG +F +    K  G+   N   V  +    I +  +D++ 
Sbjct: 54  DKKAMRSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 100

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A N + +   +++K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+
Sbjct: 101 IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNHAGYRAAYAGNIGRSLS 153

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D+DF   EL    L  I       +P+I++I  + P H+  ++  +E    K 
Sbjct: 154 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKF 209

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270
            I +   +      N DD   E    ++  +  K I S  K K AD  ++  K C  E S
Sbjct: 210 NITKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENS 265

Query: 271 WMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            ++V +L  K         G H  +N L  +    I T D
Sbjct: 266 IIDVDKLSLK---------GIHNLENTLFMVATAEIFTID 296


>gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
 gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
          Length = 452

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144
           VD  L    ++ +A R+  + T++ ITGS GKTTT  +  + L      ++T+AC     
Sbjct: 93  VDKGLPVYTEIEIAQRVM-EGTVLGITGSNGKTTTTTLTNLMLHESFPERRTFAC----- 146

Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +IGVPL+ LA    + D  + EL    L  I       RP +A I  I  AHL      
Sbjct: 147 GNIGVPLSQLAEDSKETDIYVTELSSFQLMGIEAF----RPKVACIVNIFSAHLDYHGSR 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           EE   AK +I +   +T   FL Y+  F EL +
Sbjct: 203 EEYVKAKLQITKN--QTEEDFLVYNADFPELYE 233


>gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 149/382 (39%), Gaps = 43/382 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDV 160
           +R+   +IAI G+ GKTTT  M+   L   K  Y     +G++   +G    +       
Sbjct: 98  MRNFKNVIAIAGTHGKTTTTSMIGYILK--KANYNPTILVGAFVKQLGGNFVIGSK---- 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E        ++F      P I VI  I   HL  F  I+ I ++  +  + +  +
Sbjct: 152 DYLVVEACEYVDSFLKF-----NPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTS 206

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G +  N DD   + + +K H      +      + AD        C++  + E  ++  +
Sbjct: 207 GFLVANCDDKNVKDIISKFHT----QVVCISTKEKADI-FADNISCND-GYYEFDVKNNN 260

Query: 281 MEVVHH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            E++ H    I G+H   N L    + S L  +  T  +ALS F    G  +R       
Sbjct: 261 NEILAHIKLNIPGFHNVYNALAAFAVASKLRVESLTIEQALSEFC---GASRRLEKVGEF 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQS 387
               L D+ Y  +P  +KA ++ L +IS         PH   R   +L +  E  +L+  
Sbjct: 318 NGIYLYDD-YAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKLADK 376

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +         NI  +     + L LK+     I   Y    D +  ++      GD++
Sbjct: 377 VIVTDVYAAREKNIFGITSEKLY-LKLKEI---GIDCEYISNFDDIACYVVKEAKKGDII 432

Query: 448 VVKSSNSCGFYRLINLLLEEFP 469
               +      + I+++L++ P
Sbjct: 433 ATIGAGDVN--KCIDIILKKAP 452


>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica ST-640]
 gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica 020-06]
          Length = 445

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 75/188 (39%), Gaps = 35/188 (18%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGVPLTLA---RM 156
           R    +IAITGS GKTT   ++          Y CI          +IG P+  A   R 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAGNIGTPVLEAEWQRA 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G
Sbjct: 158 GKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQ--S 270
               G   LN DD+F   +K        + +  F     ADF L     + KQ +E   +
Sbjct: 214 ---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLERETGRLKQGNEDLIA 265

Query: 271 WMEVQLQG 278
             ++ LQG
Sbjct: 266 TQDIPLQG 273


>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 258

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 38/217 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDI-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFE-----LGMSHLGEIRFLTH 180
           +    +G            P TL R        + D+ + E     L M  + E  F   
Sbjct: 138 NNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKECNF--- 194

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                IAV T +   HL      +E    K+ +F  L
Sbjct: 195 ----KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 227


>gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
 gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
          Length = 503

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 146/379 (38%), Gaps = 43/379 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   +AF A  G   DG  F+     K A      T +V + G   +   G D
Sbjct: 23  LRTDSRLVQRGDAFIAWPGHATDGRRFV-----KAALAAGAATCLVEAEG---VDAHGFD 74

Query: 90  DV-LGALNKLAVA---------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           D  +GAL  L  A          +   +  ++A TG+ GKT+T      ALS + +    
Sbjct: 75  DARIGALPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGV 134

Query: 140 IGS----------YNNHIGV-------PLTL---ARMPVDVDFGIFELGMSHLGEIRFLT 179
           +G+             HI         P+TL    R   D  F    +  S +G +    
Sbjct: 135 VGTLGIGEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRL 194

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +R  +A+ T     HL     ++   +AK  +F G        +N DD+    L A+S
Sbjct: 195 AALRIEVALFTNFTRDHLDYHGSMDAYWAAKRVLF-GWPGLKAAAVNLDDAQGAEL-ARS 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNML 297
            A  +  ++++   ++ D +LR          +   L   G ++ V    IG + A N+L
Sbjct: 253 LAGHVPELWTYSLERD-DVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLL 311

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +G +  L   +  A++ +    P  GR ++            +   Y   P +++ A+
Sbjct: 312 AVIGGLRALGVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKAL 371

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L  ++    GR + V G
Sbjct: 372 GALRPLAAARGGRLLCVFG 390


>gi|289806271|ref|ZP_06536900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 136

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 8/83 (9%)

Query: 313 AIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           A+KA L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R
Sbjct: 55  AVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYR 107

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
           + V+GDM E+G  S++ H+ + E
Sbjct: 108 VLVVGDMAELGAESEACHLQVGE 130


>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
 gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
          Length = 506

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  DSR +     FFA+KG   DG+ F+  A++ GA  VVV+  +        IP  
Sbjct: 23  IEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAGAVAVVVDGTLTPQ----GIPWV 78

Query: 87  GVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A++++A A      AT  ++ ITG+ GKTT   ++   L       A +G+ N
Sbjct: 79  RVADARLAMSRMAAAFYGFPTATLPLVGITGTNGKTTITYLIESILEKSGIPAAVLGTVN 138


>gi|260913004|ref|ZP_05919489.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
 gi|260632994|gb|EEX51160.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
          Length = 482

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 147/376 (39%), Gaps = 67/376 (17%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IAI G+ GKTTT  M+++  A + +  T+   G       N H+G    L     + D  
Sbjct: 127 IAIAGTHGKTTTTAMISMVYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 186

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P ++V+T I P H+  ++G  EE+          L   G 
Sbjct: 187 FLHL---------------QPMVSVVTNIEPDHMETYNGSFEEMKQTYVNFLHNLPFYGL 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSM 281
             L  DD   E L  K   +G + + ++G S+ AD+++  ++Q   Q    V    G+ +
Sbjct: 232 AVLCADDPVLEELMPK---VG-RQVITYGFSEKADYRIEDYQQTGFQGHYTVMTPSGERI 287

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQG 337
           +V+ +  G H A N    L +      + +  + AL+ F   +G G+R+          G
Sbjct: 288 DVLLNVPGRHNALNATAALAVAKEEGIENEAILAALADF---QGAGRRFDQLGHFIRPSG 344

Query: 338 FFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQS 387
              L+D+ Y  +P  +   I    Q            PH   R   +  D  ++  LSQ 
Sbjct: 345 KVMLVDD-YGHHPTEVAVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQV--LSQ- 400

Query: 388 FHIDLAEVLSLYNISHVWLSG---------FHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
             +D   +L +Y      ++G            L   D +  S H    E +D +     
Sbjct: 401 --VDALIMLDVYAAGEAPIAGADSRSLCRSIRNLGKVDPIFVSDHNQLGEILDQI----- 453

Query: 439 SSLVDGDVVVVKSSNS 454
             L DGD+++ + + +
Sbjct: 454 --LQDGDLILAQGAGN 467


>gi|27904701|ref|NP_777827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076803|sp|Q89AQ2|MURD_BUCBP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27904098|gb|AAO26932.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 442

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 52/353 (14%)

Query: 105 RSKATIIAITGSVGKTT-TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            +K  IIAITGS GK++ TK +  I   +   TY  IG    +IG+P  L  +     F 
Sbjct: 105 ETKVPIIAITGSNGKSSVTKIVKEIIQKAGFTTY--IGG---NIGIP-ALNIVNKFAHFF 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++ +IA I  I P HL+ +S  I+E   AK +I++    +  
Sbjct: 159 ILELSSFQLER----TFSLKAYIATILNITPDHLNRYSSDIKEYEKAKQKIYKN---SKI 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N D+     +     A   K I SFG   + D+ L         ++    L  KS++
Sbjct: 212 CIINVDNP----VTINRQAQLTKCI-SFG-VHSGDYHL-------SHTYTNTWLCYKSLK 258

Query: 283 VVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQ 336
           +++       G H   NML  L IV  L      +++ L  F      G  +RC      
Sbjct: 259 LINTKKLKLSGRHNYINMLSALAIVHELKISFKISVRILKNF-----LGLPHRCQKVYKN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S + N AS K+AI     I+  G+ R I        +G   +S +++L + +
Sbjct: 314 NNITWINDSKSTNIASTKSAI---QSINTKGKIRLI--------LGGDKKSSNLNLLKPI 362

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              N   ++  G     L +  P    +   ET+  +   I   +  GDVV++
Sbjct: 363 LKNNAIVIYCYGKDKKELFNLYPHKSKIF--ETLQEVMQHISVQVQPGDVVLL 413


>gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 511

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 142/362 (39%), Gaps = 66/362 (18%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F AIKG   DGH FI  A + GA + VV      +I  + +            +++A+A 
Sbjct: 41  FVAIKGYVTDGHKFIKKARELGAEIAVVEDYSEENIKQIRVEN----------SRIALAD 90

Query: 103 RLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH---IGVP-- 150
             R+          +I IT + GKTTT  M+   L   K+    IG+       + +P  
Sbjct: 91  MARNFYEDPSKDMNVIGITATNGKTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSV 150

Query: 151 ------LTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 LTL     D+ D G+ ++ M  S   +  +    +   I     +   H+    
Sbjct: 151 LTTPESLTLQSYFRDMKDKGVTDVTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHG 210

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-------------LGIKTI- 247
             E     K+ +    ++     LN DD     L+ K+ A              GI+ + 
Sbjct: 211 SFENYFRFKSRLIRHAKEDALAILNADDEKIYSLRDKTKAQVLSFSLESNDAEFGIQDLD 270

Query: 248 YSFGKSK-----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            S GK K     N D +++ +    E+S   ++L           +GY    N L+ + I
Sbjct: 271 LSSGKGKFTFKINRDIKIKDF--ILEKSEFNIEL---------GSVGYSSVMNSLVAIII 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D +T  +AL  F   +G  +R+    ++  F ++D+ + AN  ++ A +  L +
Sbjct: 320 GLCLKIDTETIKRALKNF---KGVERRFELIFDEE-FKILDDHF-ANEKNIDATMETLKE 374

Query: 363 IS 364
           + 
Sbjct: 375 MD 376


>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
 gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+    L R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  K +IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDVFCHAMKRAG-----REVKWFSLEHKADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ +E   +  ++ LQG
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273


>gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium sp. P08]
          Length = 529

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 161/411 (39%), Gaps = 45/411 (10%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT  DL+ ++ G  + G  P   + GI++DSR + P + +  ++G H  G  F   A + 
Sbjct: 27  WT--DLMASLDGCRADGNGPA--ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAES 82

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA  V+ +           +PV  VDD     A+    +        T+  ITG+ GKTT
Sbjct: 83  GAVAVLTDEHGAKLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTT 142

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLAR----MPVDVDF-GIF----ELGMSH 171
           T  ++   L +       IG+    + G  L  AR     P   D  G+F    E G S 
Sbjct: 143 TAFLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASD 202

Query: 172 LGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT 222
           +  +   +H +           +   T +   HL     +++   AKA +F   L + G 
Sbjct: 203 V-VMEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGV 261

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I  N DD     L  +  A G++ + +    + +D+Q+  W   +  +  +V        
Sbjct: 262 I--NVDDPRGRQLIERMQANGVRAVTT-SIHQPSDYQVTSWHAAATGAIFDVNTPSGERT 318

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFT- 340
           +     G    +N  M L ++       D     L S   P    G+  R  L     T 
Sbjct: 319 LELSLPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQVP----GRMERVDLGADAPTA 374

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG-----DMCEMGELSQ 386
           L+D  +   P ++ +A+     ++    GR IAVLG     D  + G + Q
Sbjct: 375 LVD--FAHTPQAIASALDAARSLA--DSGRLIAVLGAGGDRDAVKRGPMGQ 421


>gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 510

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 102/259 (39%), Gaps = 30/259 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            P W    LL+     S G+ VP   +  + +DSR   P   F A+ G    G      A
Sbjct: 8   QPDWRLSTLLEGFAAVSPGLDVP---LRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEA 64

Query: 61  VQKGAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           + +GA  V+      V +   L +P   V  +   L ++A            +I +TG+ 
Sbjct: 65  LARGAVAVLWEPAPGVEAPVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTD 124

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVP--LTLARMPVD-----VD 161
           GKT+  + L   L         IG+    +           P  L+L R   D     V 
Sbjct: 125 GKTSVSQFLAQTLYQESGRCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVR 184

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEK 219
           + + E+    L + R     +   IAV+T ++  HL     +E  A AKA +F   GLE 
Sbjct: 185 YTVMEVSSHALVQGRINGAAL--DIAVLTNLSRDHLDYHDSMEAYAEAKARLFRWPGLE- 241

Query: 220 TGTIFLNYDDSFFELLKAK 238
             T  LN DD+F   L A+
Sbjct: 242 --TAILNLDDAFGRKLAAE 258


>gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 158/378 (41%), Gaps = 48/378 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSI 83
           +  DSR +   + F A+ G + DG  FI  AV+ GA +VV       +  + AS+ +   
Sbjct: 19  VRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEGC 78

Query: 84  PVFGVDDVLGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V   +D   AL +LA  AR R   S+  I+ +TG+ GKTT+  +L    +        +
Sbjct: 79  RVVYHEDPREALWRLA-EARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVL 137

Query: 141 GS----YNNHI-GVPLT----------LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+    +  H    PLT          LA+M    VD  + E+    + + R     V  
Sbjct: 138 GTVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCG--VPF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSF-FELLKAKSHAL 242
             A  T +   HL     +E     KA +F  L +   +  +N DD +   LL+    AL
Sbjct: 196 AGAAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCPRAL 255

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 SFG  +    +   W +     +E   + + L+G++ E+    +G   A N L+
Sbjct: 256 ------SFGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASN-LL 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           T+  +++ T       KAL  F    GR +R     +QG    +D ++  +     A ++
Sbjct: 309 TVQALALETGLDPGQFKALESFTGVCGRLERVEN--SQGLNVFVDYAHTPD-----ALVN 361

Query: 359 VLSQISPHGEGRRIAVLG 376
           VL  +   G  R I V G
Sbjct: 362 VLKALRGAGFKRIITVFG 379


>gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
 gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
          Length = 581

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 27/263 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS+DSR + PQ+ + A+ G    G  F   A++ GA  ++ +      +G   +PV 
Sbjct: 63  VTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPVPVL 122

Query: 87  GVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGS 142
             +++   +G L  L   +         A+TG+ GKTT+  ML ++  + +      IG+
Sbjct: 123 VTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFRTGLGVKTGLIGT 182

Query: 143 YN---NHIGVP--LTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAV 188
                + + VP  +T    P V     I          +   +H +  H        +A 
Sbjct: 183 IQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAG 242

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTI 247
            T +   HL     +E    +KA++F   E+     +  DD + E +  A    +G + +
Sbjct: 243 FTNLTQDHLDLHGTMEHYFESKAQLFT-PERAELAVITADDEWGEKMFSAACEQMGAQQV 301

Query: 248 YSFGKSKN-------ADFQLRKW 263
           +    ++        A+F  R W
Sbjct: 302 HRLVTARGAGLAEVPAEFGARDW 324


>gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate
           ligase protein [Xanthomonas albilineans]
          Length = 494

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 34/394 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82
           V+G+++DSR++ P +AF AI G    G  F+  A   GA  ++       D+ AS  +++
Sbjct: 22  VSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPAPADLPASADAIA 81

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P  G+   +GA+    +        T++ +TG+ GKT+  ++LT A   +      IG+
Sbjct: 82  VP--GLRARMGAMAD-QLHGHPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGTCSGSIGT 138

Query: 143 YNNHI---------GVPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPHI 186
               +           PL L   A +    D G   + M   SH L + R     V   +
Sbjct: 139 LGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGR--VDAVHFDV 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245
           AV T +   HL     +    +AKA +F  +       +N DD+F  +LL A   AL   
Sbjct: 197 AVFTNLTRDHLDYHRDMAAYGAAKARLF-AMPGLRAAVVNLDDTFGRQLLHALDPALRRI 255

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G+   A  +       +     ++ +  +   +    +G     N+L   G +  
Sbjct: 256 GVSSRGRD-GATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFNVDNLLAVAGALYA 314

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L          L+   P  GR  R      Q    L+   Y   P +++ A+  L     
Sbjct: 315 LDVPPVRIAATLAQLQPIRGRMNRLGGRDAQ---PLVVVDYAHTPDALEQALQSLRD--- 368

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           H +GR + V G   E     +     +A+ LS Y
Sbjct: 369 HAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDY 402


>gi|288939892|ref|YP_003442132.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
 gi|288895264|gb|ADC61100.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 116/273 (42%), Gaps = 31/273 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A + AITGS GK+T   ++ + ++ +      +G    ++G P+ L  +  DV+  + EL
Sbjct: 117 APLCAITGSNGKSTVTTLVGL-MARLAGQRVAVG---GNLGEPV-LDLLAPDVERYVVEL 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +  L    R   AV+  ++  HL  ++G+++ A  KA I++G        +N 
Sbjct: 172 SSFQLETVPSL----RADAAVVLNVSADHLDRYAGLDDYARTKARIYQGAR---IAVVNR 224

Query: 228 DDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD     + +     +G    ++ G  + +DF +R  +    QSW+    QG+   +   
Sbjct: 225 DDPIVAAMPRDPEREIG----FTLGVPEGSDFGVRVLEG---QSWI---CQGEEPILPTA 274

Query: 287 GI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            I   G H   N L  L +       +  A +AL VF    G   R      +      D
Sbjct: 275 AIRLPGRHNLANALAALALAQASAIPMAGACEALRVF---PGLPHRSEFVAERAGARWYD 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +S   NP +  AA+  L  I   G GR + + G
Sbjct: 332 DSKGTNPGATIAALEGL--IPEDGSGRVVLIAG 362


>gi|34556863|ref|NP_906678.1| D-alanyl-D-alanine-adding enzyme [Wolinella succinogenes DSM 1740]
 gi|34482578|emb|CAE09578.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Wolinella succinogenes]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 123/305 (40%), Gaps = 52/305 (17%)

Query: 95  LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           LN+ A AA+ +       TIIAITGS GKT+ K  L   L+   K +A   S N   G+ 
Sbjct: 143 LNRYATAAKDKLASMPNLTIIAITGSYGKTSLKNFLAQILNDNFKVHASPRSVNTFAGIV 202

Query: 151 LTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             +     P+  D  I E G    G+I+ +  L+  H  ++  +   H+  F  +E +  
Sbjct: 203 ADINENLSPLS-DIYIAEAGARTRGDIKEIGVLLEHHYGIVGKVGEQHMEYFRTLENVRE 261

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCS 267
            K                     FEL ++      +K ++S+ G +  +  +   +   +
Sbjct: 262 TK---------------------FELAQSPR----LKELFSYEGNTPPSGIKATSFP--T 294

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDTAIKALS 318
           E   ++  L+G S E++  G  Y     +L    + +I  A          ++   + ++
Sbjct: 295 ETRNIKATLKGTSFEMLIEGQFYPFETEVLGEFNVTNISAAILVALRLGIPIEKIQRQVA 354

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P   R ++    L      ++D+S+N N   M  AI    ++S    GR++ V   +
Sbjct: 355 RLKPIPHRLQKMEVNLK----LILDDSFNGNLEGMLEAI----RLSSLYYGRKVIVTPGL 406

Query: 379 CEMGE 383
            E  E
Sbjct: 407 VESTE 411


>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 339

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 35/292 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 6   LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 66  AIIAENQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 121 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 181 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++
Sbjct: 239 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDL 286


>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
 gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
          Length = 463

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           KA +I ITGS GK+T   +L  +A  + ++  A       ++G P L L   PV  D  I
Sbjct: 122 KAPVIGITGSNGKSTVTSLLEAMARQAGRQVLA-----GGNLGTPALELLEKPVP-DLYI 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T+ +    A +  I+P H+  +  ++    AKA I+ G   TGT+ 
Sbjct: 176 LELSSFQLET----TYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYRG---TGTMV 228

Query: 225 LNYDD 229
           +N DD
Sbjct: 229 INADD 233


>gi|149190166|ref|ZP_01868442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
 gi|148836055|gb|EDL53016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
          Length = 442

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 154/357 (43%), Gaps = 57/357 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + LT A++        +G    +IGVP  L  + ++ D  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LTGAMAKAAGINVGVGG---NIGVP-ALDLLELNADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++  ++    ++  H+  + G+E+ A AK  IF   E      +N D+
Sbjct: 165 FQLE----TTYSLKTKVSTFLNLSEDHMDRYHGMEDYAQAKRRIFFNAEHA---LVNRDE 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQGKSMEVVH 285
                    S  L    + +FG ++  DF +R   +   Q W+    E  +    + +V 
Sbjct: 218 P------ETSPELAGLPVATFGFNEQ-DFGMR---EIDGQVWLVDNGETIISTDQLRLV- 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLID 343
              G H   N L+   ++ +   +    +  L+ +      G  +RC +  ++     ++
Sbjct: 267 ---GKHNWSNALVACALLKLSGINYRKGLACLAAY-----TGLSHRCQVVADEKGVKWVN 318

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N AS  AA+S L+      EG+   ++G + +  + S+     LA+ LS  N+  
Sbjct: 319 DSKATNVASTLAALSGLTL-----EGKLYLLVGGVGKGADFSE-----LAKPLSELNVKL 368

Query: 404 VWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                 G   +AL    P ++     +T++ +   I   L  GD+V++  S +C  +
Sbjct: 369 CCFGRDGEEFMALH---PSAVRY---DTLNNVLTDITPELQKGDMVML--SPACASF 417


>gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
 gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
          Length = 449

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     ++
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKNSRLTGRLSGNIGYVASKVAQEVSSKEY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LITELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRHLIESENLKAKT 238


>gi|168180985|ref|ZP_02615649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
 gi|182668046|gb|EDT80025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEDYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   +++L+
Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DIKLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
 gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
          Length = 492

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 172/419 (41%), Gaps = 55/419 (13%)

Query: 9   DLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +L++AI   ++ +   G    + GI+  S  + P   F   KG  +D H+     ++KGA
Sbjct: 5   NLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEIIKKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTK 123
             +VV   +     S+  P   V D   A + L+        +K   I ITG+ GKTT  
Sbjct: 65  SFLVVEHPI-----SVDFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITGTNGKTTAA 119

Query: 124 EMLTIALSSIKKTYACIGS-YNNHIG---------VP-----LTLARMPVD-------VD 161
            +    L ++    + +G+ Y + +G          P     L   +  VD       ++
Sbjct: 120 HLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDRSGKHFVME 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                L M  +  ++F        IA +T I   HL      +E    K  IF+ L++ G
Sbjct: 180 VSSHSLAMKRVESVKF-------DIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEFG 232

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              ++  D F  ++  +      K IY  G S+N+D+++   +     +   ++ +    
Sbjct: 233 IAVVS--DEFEHIVNKRVK----KVIY--GMSENSDYRILSAEIDKFGTNFVLKSRFGEH 284

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +   +  G H A N  + +  +  L  D+++ I+A+  F   EGR +  R     G   +
Sbjct: 285 KCSINIPGIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIV 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +D  +  +P +++  +    +I+    GR I V G     G+  +     +AEV+  Y+
Sbjct: 345 VD--FAHSPDALEKTLITARKIAS---GRIITVFG---AGGQADKGKRPMMAEVVCRYS 395


>gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
          Length = 489

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 162/369 (43%), Gaps = 48/369 (13%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  ++    A   +  T+  IG   N  G   + AR+     F I E  
Sbjct: 124 VAVAGTHGKTTTTSLIASIFAEGGLDPTF-VIGGLLNSAG---SNARLGTS-RFFIAEAD 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL   ++P +AV+T I   H+  + G  + + +   +    L   G   +  
Sbjct: 179 ES---DASFLH--IQPMVAVVTNIEADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVMCI 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVH 285
           DD   + +  +      +   ++G S++AD +   + Q   +S  +V  +     +E+  
Sbjct: 234 DDKTVQEIMPRV----TRPTVTYGFSEDADVRAVDFTQSGTKSHFKVIRRDYDGELEITL 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTAD--VDTAI-KALSVFHPKEGRGKRYRC----ALNQGF 338
           +  G H  QN    L  +++ T D   D AI KALS F    G G+R++      ++   
Sbjct: 290 NLPGRHNVQN---ALAAIAVATEDGVSDQAIQKALSEFG---GIGRRFQMYGDFKVDGKT 343

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEV 395
            TL+D+ Y  +P+ + A I  + +  P    RR+ ++          +L + F   L+EV
Sbjct: 344 ITLMDD-YGHHPSEVMATIEAMRRSWPE---RRLVMVYQPHRYSRTRDLYEDFSKVLSEV 399

Query: 396 LSLYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +L  +  V+ +G   +   D  +L RSI         + E +  L   + + L DGDVV
Sbjct: 400 DALL-LLEVYAAGEEPIPGADSRSLCRSIRQRGKIEPIHVEKIAQLPELLSNILQDGDVV 458

Query: 448 VVKSSNSCG 456
           V + + + G
Sbjct: 459 VTQGAGNVG 467


>gi|167945530|ref|ZP_02532604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 305

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 29/199 (14%)

Query: 80  SLSIPVFGVD-----DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           SL  PV G        V+G +   A AA     A IIAITGS GK+T    +T  L  + 
Sbjct: 6   SLQTPVIGAAIERGVPVVGDIELFAQAA----NAPIIAITGSNGKST----VTTLLGEMA 57

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           K      +   ++G P  L  +  DV   + EL    L      T  +R  +AV+  IA 
Sbjct: 58  KVAGLNVAVGGNLGEP-ALDLLDEDVQLYVVELSSFQL----ETTQSLRAKVAVVLNIAA 112

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKS 253
            H+  +  +++  +AKA ++   E+     +N DD     + A   + LG    ++ G+ 
Sbjct: 113 DHMDRYVSLDDYIAAKAVVYRNAEQR---VVNRDDPRVVAMVADLDNTLG----FTLGEP 165

Query: 254 KNADFQLRKWKQCSEQSWM 272
           +  DF +R+    + + W+
Sbjct: 166 EGEDFGVRR---VAGKRWL 181


>gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 174/448 (38%), Gaps = 90/448 (20%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG D +++     A +   N +M+ +   L+IP      +LG +        ++     +
Sbjct: 66  DGADLVVYT----AAVKEDNPEMIRA-RELNIPTIDRATLLGEI--------MKKYTYGV 112

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + GS GKTTT  ++++ L  +        +Y+     P  L    VD+  G   +G S 
Sbjct: 113 GVAGSHGKTTTTSLISVLLEEM--------NYD-----PTVLVGGEVDIIGGNVRVGNSE 159

Query: 172 LGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                F+T             P+IAVI  +   HL  F  I+ I  +  +    +   G 
Sbjct: 160 Y----FITEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPNDGF 215

Query: 223 IFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +    DD +   +LK  +     + I +FG   N  +  +  K   E+ +        S 
Sbjct: 216 VVACGDDPNTMSVLKNVN-----RNIITFGLDSNCTWNAKNIK-FDEKGF-------PSF 262

Query: 282 EVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +V H+G          +G H   N L TL +  +L  D+      +  F   +G  +R+ 
Sbjct: 263 DVYHNGTFVERFELSIVGKHNILNALATLSVCHLLGVDIKKTPDIIKKF---KGTHRRFE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382
                    +ID+ Y  +P  +KA +S         ++    PH   R  ++L D     
Sbjct: 320 FKGTIDGAVIIDD-YAHHPTEIKATLSSALNYPHNRIICVFQPHTYTRTYSLLND----- 373

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQ 438
             + SF  D A++  + +I         ++  +D       R   V+Y +    +  +++
Sbjct: 374 -FAASF--DDADITIITDIYAAREKDTGIVRAEDLANLIKDRGNEVYYIKEFSDIVDYLK 430

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++ +GD+V+   +     Y + N+LL 
Sbjct: 431 GTIKNGDLVITIGAGDV--YEIGNMLLN 456


>gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
 gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
          Length = 467

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 30/266 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  +IAITG+ GK+TT  ++   L     T    G    +IG+ +     P      + E
Sbjct: 115 RPWVIAITGTNGKSTTTALIGWVLQQAGLTVHVGG----NIGIGVLALPEPTPGAVYVIE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L     LT    P  A++T I+P HL    G+E   +AK  IF+   +    ++ 
Sbjct: 171 VSSYQLD----LTTGFAPDAAILTNISPDHLDRHGGMEGYVAAKRRIFQ--SRKTAPYVG 224

Query: 227 YDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            DD +    ++ LKA+  A+   ++      +  D  L  +       W+     G+   
Sbjct: 225 IDDPYGFAIWQELKAEGRAVDPVSV-----ERPMDDDLGMYLM---DDWLTYNAGGRPAP 276

Query: 283 VVHHG-----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +V         G H AQN       V+ +    +T +K L  F    G   R     + G
Sbjct: 277 IVDLSKARSLPGRHNAQNAAFAFLAVNDMGIPEETVVKGLLTF---PGLAHRMEAVGHIG 333

Query: 338 FFTLIDESYNANPASMKAAISVLSQI 363
               I++S   N  + + A++   ++
Sbjct: 334 HVRFINDSKATNADAARQALASYPKV 359


>gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas europaea ATCC 19718]
 gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas
           europaea ATCC 19718]
          Length = 521

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 25/217 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P + F A  G  +D  + I  A+ +G   ++      +      IP  GV  + 
Sbjct: 32  DSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEKQGFSWKPEWKIPNLGVAGLR 91

Query: 93  GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-------- 142
               K+A  A         ++ ITG+ GKTT  +    A++++ K  A IG+        
Sbjct: 92  HEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKTAVIGTLGHGFPGA 151

Query: 143 -YNNHIGVPLTLARMPVDVDF---GIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAP 194
            Y +    P  +    +  ++   G   L M   SH L + R +       +AV+T +  
Sbjct: 152 LYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLIGSEF--AVAVLTNLTR 209

Query: 195 AHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDD 229
            HL     ++  A+AKA++F  EGL+      LN D+
Sbjct: 210 DHLDYHDSMDAYAAAKAKLFFWEGLQYA---VLNLDE 243


>gi|254673379|emb|CBA08659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 260

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 64/154 (41%), Gaps = 25/154 (16%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + + A  KA+IF G    G   LN DD+F   +K
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMK 230


>gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
 gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
          Length = 483

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 144/377 (38%), Gaps = 37/377 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P     G++ DSR +AP   F A+ G   DG DFI  A+  GA  + V TD     G  
Sbjct: 10  APDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGA--IAVLTD--ERDGEW 65

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IP   V +   A  K A A   +    ++A+TG+ GK++T + L    + +    A +G
Sbjct: 66  EIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHVSASVG 125

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRP 184
           +                 + + V  TLA +    + G+    M  S  G  ++  H V+ 
Sbjct: 126 TLGAVGPSGAVELGHTTPDPVAVQSTLAIL---ANEGVTHCAMEASSHGLAQYRMHGVQL 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                  ++  HL      E+  +AK ++F E L +     +N D    +   A + A  
Sbjct: 183 AAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIATAAN 242

Query: 244 IKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +K  ++ G   +     +   R   Q  +  W E     K   V    IG   A N L  
Sbjct: 243 LKP-FTVGWRGDHLWIDEISPRNTGQKLQLQW-ETPEGDKETIVNLPLIGEFQALNALAA 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            GI   L AD      A+      +GR +      N G    +D  +   P  +    ++
Sbjct: 301 AGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQN-GAGIFVD--FAHTPDGLD---TL 354

Query: 360 LSQISPHGEGRRIAVLG 376
           L    PH  GR I V G
Sbjct: 355 LRAARPHAAGRVICVFG 371


>gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
 gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY      + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ +L         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-ILAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +A    DAL R++         + ET+D L   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N]
 gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N]
          Length = 468

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 53/373 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L +       G F + 
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLDPTF-VIGGRLNSAGANAQLGQ-------GEFIVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P +A+IT I   H+  +   +  + SA  E  + L   G+  L  
Sbjct: 160 EADESDASFLNLL--PVMAIITNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCA 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SM 281
           DD+   E++   S     + I ++G S +A  +    +    +    V+ QG+     ++
Sbjct: 218 DDANVREIMPFVS-----RPITTYGLSSDAQVRAENVQADGTRMRFSVRRQGREQDLPTL 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC-------- 332
           EV  +  G H  +N L  + + S L    D AI +AL+ F   +G G+R+          
Sbjct: 273 EVELNLPGLHNVRNALAAIAVASELGV-ADAAICQALAGF---KGVGRRFTQWGEFPVAE 328

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A   G +++ID+ Y  +P  M A ++      P    RRI +             F  D 
Sbjct: 329 AQGGGRYSVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-DF 383

Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441
             VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L   ++  +
Sbjct: 384 VRVLGTADAVLLTEVYAAGEAPLVAADGRALARALRVAGKVEPLFVEDVAALPQAVRDFM 443

Query: 442 VDGDVVVVKSSNS 454
            DGDV+++  + S
Sbjct: 444 RDGDVLILMGAGS 456


>gi|330686337|gb|EGG97942.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU121]
          Length = 449

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     ++
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKNSRLTGRLSGNIGYVASKVAQEVSSKEY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LITELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRHLIESENLKAKT 238


>gi|328947389|ref|YP_004364726.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
 gi|328447713|gb|AEB13429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
          Length = 531

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIA+TGS GK++T   L+  L+  +  + C    N  +  PL+           + 
Sbjct: 125 TKAPIIAVTGSKGKSSTVSALSYGLN--QAGFKCFLGGNITVS-PLSFLEKTDGTTPVVL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L ++R    L++P I++IT I P H + +  ++     K  IF   +K     L
Sbjct: 182 ELSSWQLADLRG-RKLLKPKISIITKIVPDHQNWYGDMDSYVEDKKLIFADQDKNDFTIL 240

Query: 226 NYDD 229
           ++D+
Sbjct: 241 DFDE 244


>gi|226950973|ref|YP_002806064.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
 gi|254766043|sp|C1FNC3|MURD_CLOBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226843277|gb|ACO85943.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEDYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   +++L+
Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DIKLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|225023733|ref|ZP_03712925.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
 gi|224943615|gb|EEG24824.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
          Length = 486

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 27/265 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    L++  +  T+         IG  LT A     +  G + + 
Sbjct: 128 IAIAGTHGKTTTTSLTASILTAAGLDPTFV--------IGGKLTAAGTNAKLGGGQYIVA 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I V+T I   H+  +   ++++  A  E    +   G  FL  
Sbjct: 180 EADESDASFL--YLTPVITVVTNIDTDHMDTYDHSVDKLHQAFVEFVHRMPFYGKAFLCI 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVV 284
           D      +  +      K   ++G  + AD           Q    V L  +S+   EV 
Sbjct: 238 DSEHVRAILPEIQ----KPFATYGLDETADIYADNVHSEGAQMCFTVHLNKRSIAPFEVR 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFT 340
            +  G H   N L  +G+     ADV+   + L+ F    G G+R++      L QG   
Sbjct: 294 LNAPGRHNVLNALAAIGVALECGADVEAIQRGLAGFG---GVGRRFQSYGEIKLPQGGSA 350

Query: 341 LIDESYNANPASMKAAISVLSQISP 365
           L+ + Y  +P  M A +S      P
Sbjct: 351 LVIDDYGHHPVEMAATLSAARGAYP 375


>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 293

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 35/292 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 178 SHALVQGRV--YGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++
Sbjct: 236 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDL 283


>gi|126665245|ref|ZP_01736228.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
 gi|126630615|gb|EBA01230.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
          Length = 486

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 162/392 (41%), Gaps = 57/392 (14%)

Query: 96  NKLAVAARLRSKATI------IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHI 147
           N++ +  R    A I      IA+ G+ GKTTT  ++    A + +  T+  IG   N  
Sbjct: 101 NRIPIVPRAEMLAEIMRYRHGIAVAGTHGKTTTTSLIASVFAEAGLDPTF-VIGGKLNSA 159

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEI 206
           G    L           + +  +   +  FL HL  P I+V+T I   H+  + G +E++
Sbjct: 160 GTNAKLG-------GSRYLIAEADESDASFL-HLT-PLISVVTNIEADHMDTYGGDVEKL 210

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK 264
                +    L   G   +  DD +  E+L   S     +TI ++G  +  AD++     
Sbjct: 211 KQTFVDFLHNLPFYGVAVMCIDDPYVREILPRIS-----RTIITYGIDNPEADYRAENIV 265

Query: 265 QCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAI--KALSV 319
               ++   V+  G    ++V     G H   N+L  L ++++ T D VD A   + L+ 
Sbjct: 266 SDGLRTRFLVKRPGPRADLQVELKMPGRH---NVLNALAVIAVATDDGVDDASIGRGLAG 322

Query: 320 FHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           F    G G+R++      + +G  TL+D+ Y  +P  + A I       P   GRR+ +L
Sbjct: 323 F---AGVGRRFQVYGDYPIAKGSITLVDD-YGHHPTEVAAVIRAARDAWP---GRRVVML 375

Query: 376 GDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVH- 425
                    ++  + D  +VLS         +Y+     + G    AL  +L +   V  
Sbjct: 376 YQPHRFSR-TRDLYEDFVKVLSTVDGLLLMDVYSAGEAAIPGCDGRALCRSLRQRGKVEP 434

Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            + E    +   + S L DGD+++ + +   G
Sbjct: 435 VFVEHNKDIETLLASVLRDGDLLITQGAGDIG 466


>gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
 gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
          Length = 607

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 27/263 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS+DSR + PQ+ + A+ G    G  F   A++ GA  ++ +      +G   +PV 
Sbjct: 89  VTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPVPVL 148

Query: 87  GVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGS 142
             +++   +G L  L   +         A+TG+ GKTT+  ML ++  + +      IG+
Sbjct: 149 VTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFRTGLGVKTGLIGT 208

Query: 143 YN---NHIGVP--LTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAV 188
                + + VP  +T    P V     I          +   +H +  H        +A 
Sbjct: 209 IQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAG 268

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTI 247
            T +   HL     +E    +KA++F   E+     +  DD + E +  A    +G + +
Sbjct: 269 FTNLTQDHLDLHGTMEHYFDSKAQLFT-PERAELAVITADDEWGEKMFSAACEQMGAQQV 327

Query: 248 YSFGKSKN-------ADFQLRKW 263
           +    ++        A+F  R W
Sbjct: 328 HRLVTARGAGLAEVPAEFGARDW 350


>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           GI+ DSR +     FFAI+G  +DGH+F+  A+++GA  VVV  D+ A
Sbjct: 14 QGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEA 62


>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
 gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
          Length = 453

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           KA +I ITGS GK+T   +L  +A  + ++  A       ++G P L L   PV  D  I
Sbjct: 112 KAPVIGITGSNGKSTVTSLLEAMARQAGRQVLA-----GGNLGTPALELLEKPVP-DLYI 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T+ +    A +  I+P H+  +  ++    AKA I+ G   TGT+ 
Sbjct: 166 LELSSFQLET----TYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYRG---TGTMV 218

Query: 225 LNYDD 229
           +N DD
Sbjct: 219 INADD 223


>gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 495

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 157/394 (39%), Gaps = 53/394 (13%)

Query: 18  SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           ++G+ P G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +
Sbjct: 10  ALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAILTD 69

Query: 72  TDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTT-- 121
               A       GS +  +   D        LA AA L   R  AT++A+TG+ GKT+  
Sbjct: 70  AAGAALAREALQGSTAALIVAED----PRQALAGAAALWFGRQPATMVAVTGTNGKTSVA 125

Query: 122 --TKEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM- 169
             T+++        + I  + ++  +A   ++      P+TL R+  D  + G+    M 
Sbjct: 126 TFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLADAAEAGVTHAAME 183

Query: 170 --SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIF 224
             SH  E R L   HL     A  T     HL      E   +AKA +F   L   GT  
Sbjct: 184 ASSHGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD     + A +   G K I + G    AD +L   +  +    +    QG      
Sbjct: 241 VNLDDPRGPEIAALARDRGQKVIGT-GFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTR 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFTLI 342
              IG   A N+ +  G+        D   +  + F   +G RG+    A  Q G    +
Sbjct: 300 LPLIGGFQAWNVAVAAGLA---IGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFV 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P ++  A+  L    PH  GR I V G
Sbjct: 357 D--YAHTPDALATALKAL---RPHVMGRIIVVFG 385


>gi|319757602|gb|ADV69544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis JS14]
          Length = 447

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
           A L S   I+ ITGS GKTTT  M+   L++ KK     G    +IG P  ++A+     
Sbjct: 104 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCG----NIGYPASSVAQTATAE 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIAV+T +  +H+      E+  +AK  I   +   
Sbjct: 160 DTLVMELSSFQL----MGTESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAE 215

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279
             + +N++    + L  ++ A    T+  F   +  D   L   K   +  ++       
Sbjct: 216 DFVVINFNQKEAKELAGQTKA----TVVPFSTQEVVDGAYLADGKLYFKGEYI------- 264

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            M+    G+ G H  +N L T+ +  +L  D     ++LS F
Sbjct: 265 -MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAF 305


>gi|299139506|ref|ZP_07032680.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298598434|gb|EFI54598.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 157/397 (39%), Gaps = 58/397 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-------SIGSLSIPV 85
           D R  A  E    +    Y GH     A    A  VVV +  VA          +  IPV
Sbjct: 36  DLRGSATTERLARLGATIYTGHT----AANAAASDVVVTSSAVAKDNPEVLEARARKIPV 91

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY 143
               ++L  L +L            IAI G  GKTTT  M+   L+  ++  T   +G  
Sbjct: 92  IQRAEMLAELMRLKYG---------IAIAGMHGKTTTTSMVAAVLAGGALDPT-VVVGGR 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            + +G    L R         + +  +   +  FL   + P +AV+T +   H+  ++ +
Sbjct: 142 VDAMGSNARLGR-------SQYLVAEADESDRSFLK--LSPILAVVTNLDREHMDTYADL 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            ++     E  + +   G I    D+   E+L+A    +  + IY++G+S +ADF+LR  
Sbjct: 193 ADVERVFVEFMDRVPFYGAITACVDN---EMLRAILPRV-TRRIYTYGESPDADFRLRVL 248

Query: 264 KQCSE-QSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +   +  +  EV  +G  +   + H  G H   N    + I   L    +     L+ F 
Sbjct: 249 RPAPDCHATFEVNTRGLVLGPFNLHVPGRHNLLNATAAVAIGVQLGIPPEKIAAGLASFR 308

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRI 372
              G  +R++    Q   T++D+ Y  +P  ++A +          VL    PH    R 
Sbjct: 309 ---GVDRRFQTKGVQNGVTVVDD-YGHHPTEIRATLQAARECGYGRVLVLFQPH----RY 360

Query: 373 AVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSG 408
               D+ E  + + +F   D  +VL +Y  S   + G
Sbjct: 361 TRTRDLLE--DFTTAFGDADSLQVLDIYAASEQPIPG 395


>gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
 gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
          Length = 495

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA  V+   D   + G +    ++PV
Sbjct: 30  LELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIEYREAVPV 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L+++A          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 90  MYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149


>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 487

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 31/271 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+ IQ   I       +  I  DSR +  +  F  I+G    G  +I  A+Q+GA 
Sbjct: 3   LQELLKGIQVEKIIGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGA- 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTT 122
           + +++   +A  G+ +I V      L      AVA+R     T    ++ +TG+ GKT+ 
Sbjct: 62  VAILSEKEIAIEGTTTIKVENSRKALA-----AVASRFYKFPTNTLKLVGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFE 166
             M+   L         IG+ +N IG          P +L    +        VD  + E
Sbjct: 117 TYMVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  E+  + H  +  + + T + P HL     ++   +AK ++F   + T    +N
Sbjct: 177 VS-SHALELGRVDH-TKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLF--YKTTLCNIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            DD   +++  +     I  I +FG ++ AD
Sbjct: 233 VDDIHGKMIAEELKEEQIPLI-TFGMNQQAD 262


>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 23/215 (10%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +N   +A         I ITG+ GKTT    +T  LS I +       +  +IG P
Sbjct: 106 VIGEIN---IAWESLKNINWIGITGTNGKTT----VTHLLSHILRENNLFAPFAGNIGTP 158

Query: 151 L---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           L     +    ++D+ + EL      +I   TH ++P I + TT  P HL     ++   
Sbjct: 159 LCEIAYSTKSKNIDWIVAELSSF---QIEIATHCIKPKIGIWTTFTPDHLDRHKTLDNYF 215

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K  +   L+++     NYDD +  E  K+  + + I T  +   S + D+ +      
Sbjct: 216 KIKNSL---LKQSEFRIYNYDDQYLKENFKSLLNGIWITTNPNVSDSDHCDYWINNENFI 272

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            E+    + L+   ++      G H  QN+L+ + 
Sbjct: 273 VERREKLLSLKNFKLK------GNHNTQNLLLAVA 301


>gi|2463563|dbj|BAA22556.1| MURD [Staphylococcus aureus]
          Length = 269

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A IIA+TG+ GKTT    +T  +  + K     G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRQVIESEELKAKT 238


>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
 gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
          Length = 471

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++  A  L      IA+TG+ GKTTT  ++   +SS KK    +G+  N     L     
Sbjct: 115 EIEFAYNLLPNRNYIAVTGTDGKTTTVTLIYKIISSYKKA-RLVGNVGNTFSKELETIEP 173

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D+   + EL    L  +         HIA I  IA  HL  +  IEE  +AK  I   
Sbjct: 174 DEDI---VLELSSFQLETVEKF----HAHIAAILNIAEDHLDRYKDIEEYFNAKKNISIN 226

Query: 217 LEKTGTIFLNYDDSF 231
             K   + LNYD+ +
Sbjct: 227 QNKNDFLILNYDNIY 241


>gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 511

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 30/239 (12%)

Query: 19  IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +GI+P        +N IS +S+ +     F  + G + DG  + + A++ GA   ++ + 
Sbjct: 13  VGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAIIGSA 72

Query: 74  MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129
               IGS+    +  ++D L  +    V+    R   K  +I +TG+ GKTT   +L   
Sbjct: 73  AKQKIGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132

Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173
           L  + K  A  G+ +N   G                    A +  + +F I E+    + 
Sbjct: 133 LKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILEVSSHSIA 192

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDD 229
           + R          A+ T +   HL   S +E     K ++F      +K G   LN+DD
Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVLNHDD 249


>gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrospira platensis str. Paraca]
          Length = 498

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 160/384 (41%), Gaps = 54/384 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           + G++ +S +  P + F  + G   DG DF   A+  GA   +V+    ++      S +
Sbjct: 24  ITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETDSDT 83

Query: 83  IP-VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           IP V    D+  A  ++A A       T  ++ +TG+ GKTTT  ++   L+++ K  A 
Sbjct: 84  IPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKPTAL 143

Query: 140 IGS-YNNHIGV-PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183
           +G+ Y    G   + +   P  V+              FG+ E+    L + R L    +
Sbjct: 144 LGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQ 203

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV T +   HL     +++   AKA +F      G   +N DD + + L A+   LG
Sbjct: 204 --VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR---LG 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-----------YHM 292
              ++S+  S   D     W       +    +QG    V+H  +G           Y++
Sbjct: 259 GDRVWSYSVS---DPSTDIW--ADSLVYQPTGIQG----VLHTPMGSASFSLPLVGQYNL 309

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           + N+L  LG    L  D+   + +L  F    GR +R + +  Q    ++D  Y   P S
Sbjct: 310 S-NLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQNITVIVD--YAHTPDS 366

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++   ++L    P   GR I V G
Sbjct: 367 LE---NLLKASRPFIPGRMICVFG 387


>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 485

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 146/367 (39%), Gaps = 35/367 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ DSR +     F AIKG   DGHDFI  A+  GA +V+   ++      L I V 
Sbjct: 24  ISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINNGAVVVIGEKEINLPEDVLYIKVK 83

Query: 87  GVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                L   + L     A RL     +I +TG+ GKTTT  ++   L     +   +G+ 
Sbjct: 84  NSRKALSEASSLFFGKPAERL----NVIGVTGTNGKTTTTYLIKAILDEAGYSTGVVGTI 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAVI 189
              I   L  A         + E+    + E + ++T  V  H             + V 
Sbjct: 140 GIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVTMEVSSHSLKLHRVDHVKFEVGVF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      E+  ++K ++F+   K     +N DD   E L ++   L I  I +
Sbjct: 200 TNLTQDHLDFHVSFEDYYASKKKLFDLSRKA---VINVDDESGERLCSE---LNIPVI-T 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +   KNAD +       S+    EV   G+  ++ +   G     N L  +     L  D
Sbjct: 253 YAIEKNADVRAENVVIGSDGVSYEVCAGGERRKITYKVPGRFSVYNSLAAISACLSLGID 312

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++T  KAL       GR +       Q F  ++D  Y   P  ++   +VL+ +     G
Sbjct: 313 LETMAKALEKVRGVPGRFE--PVDEGQDFTVIVD--YAHTPDGLE---NVLNTVKTFARG 365

Query: 370 RRIAVLG 376
           R I V G
Sbjct: 366 RIITVFG 372


>gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
 gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
          Length = 479

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 96  NKLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           +++ +A RLR  A     + +TG+ GKTTT +MLT  L++        G    ++G+PL 
Sbjct: 107 SEIELAWRLRDPANAAPWLCVTGTNGKTTTVQMLTAMLTAAGHRAVAAG----NVGLPLL 162

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A M P   D    EL    L      TH +  H A +  +AP H+     +E  A+ K 
Sbjct: 163 EAVMDPEPYDVIAVELSSYQL----HFTHSMSAHSAAVLNLAPDHVDWHGSLEAYAADKG 218

Query: 212 EIFEGLE 218
            IFE  +
Sbjct: 219 RIFENCQ 225


>gi|146320316|ref|YP_001200027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 98HAH33]
 gi|253751317|ref|YP_003024458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|253753218|ref|YP_003026358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|253755041|ref|YP_003028181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|158514149|sp|A4VZT8|MURD_STRS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145691122|gb|ABP91627.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           98HAH33]
 gi|251815606|emb|CAZ51192.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|251817505|emb|CAZ55249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|251819463|emb|CAR44977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|292557890|gb|ADE30891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           GZ1]
          Length = 449

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
           A L S   I+ ITGS GKTTT  M+   L++ KK     G    +IG P  ++A+     
Sbjct: 106 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCG----NIGYPASSVAQTATAE 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIAV+T +  +H+      E+  +AK  I   +   
Sbjct: 162 DTLVMELSSFQL----MGTESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAE 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279
             + +N++    + L  ++ A    T+  F   +  D   L   K   +  ++       
Sbjct: 218 DFVVINFNQKEAKELAGQTKA----TVVPFSTQEVVDGAYLADGKLYFKGEYI------- 266

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            M+    G+ G H  +N L T+ +  +L  D     ++LS F
Sbjct: 267 -MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAF 307


>gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 495

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 33/233 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           +  + GIS++S +    + F AI+G   DG D+I  A+ KG   ++         G +  
Sbjct: 17  ECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAKGVAAILAEAKGQTKHGEIHK 76

Query: 82  --SIPVFGVDDVLGALNKL--AVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSI 133
              +P+         LNK+  A+A     + +    +I ITG+ GKTT   +L   LS +
Sbjct: 77  LHDVPII----YFNQLNKMLSAIAGHFYQQPSRFLRLIGITGTNGKTTISYLLANWLSLL 132

Query: 134 KKTYACIGSYNNHIGVPLTLA--------------RMPVD--VDFGIFELGMSHLGEIRF 177
            +T A +G+  N I   L  +              R   D  V F I E+    L + R 
Sbjct: 133 GETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVKFSIIEVSSHGLVQDRV 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +    AV + ++  HL     + +   AK ++F  L  +  I +N DD+
Sbjct: 193 SN--LNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSELNVSKRI-INVDDT 242


>gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
 gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
          Length = 495

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +     
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I +TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKSAVMGT 146

Query: 143 YNN 145
             N
Sbjct: 147 TGN 149


>gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
 gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
          Length = 484

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 153/369 (41%), Gaps = 33/369 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GIS DSR + P   FFA+ G   DG  +   A ++GA  VV       S+  L +PV 
Sbjct: 22  VTGISSDSRQVKPGVVFFALAGTKADGAAYAADAARRGALAVVAGKSN--SVAGLPVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSIKKTYAC 139
            VDD   AL   A     +   T++A+TG+ GKT+         E    A +SI  T   
Sbjct: 80  TVDDPRLALALSAARYFGKQPRTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVV 139

Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
               N +  +    P+ L ++  ++ D G+    M   SH  + R L   V+      T 
Sbjct: 140 APGRNEYGSLTTPDPVALHQLLRELADAGVTYASMEASSHGLDQRRLDG-VKLAAGGFTN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIY 248
           +   H+     +E+   AK  +F+ L   G    IF +   S   +  A++  L + T+ 
Sbjct: 199 LGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAAQAAGLNVLTV- 257

Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                ++ DF  L++ +    +   EV+ +G   E+     G     N L++ G+     
Sbjct: 258 ----GRHGDFLTLKRVEHERHRQRAEVEAEGVLYEIDLPLAGDFQISNALVSAGLAISTG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V  A+ AL       GR       ++ G    +D  Y   P +++   +VL+ + P  
Sbjct: 314 TPVAKALAALEKLKGAPGRLDLVGTTVS-GAPVYVD--YAHKPDALE---NVLASVRPFT 367

Query: 368 EGRRIAVLG 376
            GR + V G
Sbjct: 368 TGRVMVVFG 376


>gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
 gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
          Length = 473

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 150/369 (40%), Gaps = 48/369 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158
           +R K+T+ A+ G+ GKTTT  M+   L +  +  T      I SY ++       AR+  
Sbjct: 105 MRLKSTV-AVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLG- 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + ++ + E   S    +R    L     AV+T I P HL ++   +++  A  E  E + 
Sbjct: 156 NSEWMVVEADESDGSFLRLDGTL-----AVVTNIDPEHLDHYGSFDKVKDAFVEFVENVP 210

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   L  D    + +  +      + I ++G S  AD +    +     +  +VQ++ 
Sbjct: 211 FYGAAMLCLDHPEVQAILPRVQD---RRIVTYGFSAQADIRGENVQPIPGGNRFDVQIRE 267

Query: 279 KSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331
           +   +    GI     G H   N +  +G+   +  D  T     + F   + R  K   
Sbjct: 268 RDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFTKVGE 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382
            A+  G  T+ID+ Y  +P  +KA ++         V++ + PH    R   L D+  M 
Sbjct: 328 IAVGGGTATVIDD-YGHHPVEIKAVLAAAREGAKGRVIAVVQPH----RFTRLRDL--MD 380

Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQS 439
           E  Q+F+  D+     +Y      + G     L   L R  H + +  E  D L   I +
Sbjct: 381 EFQQAFNDADIVYAAPVYPAGEQPIEGVDSAELVAGLKRRGHRNAATVEGADDLARVIAA 440

Query: 440 SLVDGDVVV 448
            +   D+++
Sbjct: 441 DVQADDMII 449


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 66/402 (16%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129
           N + +     L+IP+    + LG +        ++     IA++G+ GKTTT  ML+ I 
Sbjct: 81  NNEELLKAKDLNIPLMDRAEFLGEI--------MKGHKYNIAVSGTHGKTTTTSMLSSIT 132

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L +       +G   + IG  + +   P    F I E        ++F      P I +I
Sbjct: 133 LEANLDPTILVGGNLDIIGGNVRIGNSP----FFITEACEYKESFLKFF-----PFIGII 183

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   HL  +  IEEI +A  +  + + K G +    DD   E + +  +      + S
Sbjct: 184 LNIDADHLDYYKDIEEIQNAFIKFGKLIPKEGYLVCCADDRRMEKIISNVNC----NVMS 239

Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILT 307
           +G  +  D   +      E +++ EV    K +  ++  + G H   N L ++ +  IL 
Sbjct: 240 YG-IETGDITAKNICFDKEGRAFFEVYKSDKKLFSLNLSVPGEHNILNALASISVSLILN 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358
             VD  I  L  F   +G  +R+     +    +ID+ Y  +P  +KA ++         
Sbjct: 299 ISVDNIINGLKSF---KGTHRRFEIKGQRKGVVVIDD-YAHHPTEIKATLNAAKNYPHKR 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA- 417
           ++    PH   R I++        E + +F           N+  + LS       KD  
Sbjct: 355 IICVFQPHTFSRTISLF------KEFTAAFD----------NVDELILSDIFPAREKDTG 398

Query: 418 -----------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                      + R +     +  D +  ++ + L +GDV++
Sbjct: 399 EISSSMLCEQIIKRGVKCRNIKDFDSIVQYLNNILTEGDVLL 440


>gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
 gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
          Length = 486

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 143/378 (37%), Gaps = 54/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR  AP   F A+ G   DG  ++     K A        +        +PV 
Sbjct: 27  IGGITADSRKAAPGSLFVAVAGTKADGAAYV-----KDAVAKGAVAVVSGHAVDADVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    L+  A     +   T++A+TG+ GKT+         S +++ +A  G     
Sbjct: 82  AVTDPRLYLSLAASRFYGKQPETMVAVTGTAGKTSVA-------SFVRQIWAFAGHAAAQ 134

Query: 147 IGVPLTLARMPVDVDFGIFEL----------------GMSHLG--------EIRFLTHLV 182
           IG    +A  P   D+G                    G++H          + R L   V
Sbjct: 135 IGTTGVIA--PGREDYGALTTPDPVTLHALLAELAAEGVTHAAMEASSHGLDQRRLDG-V 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFE--LLKAKS 239
           +   A  T +   H+     IE+  +AK  +F+ L EK     +  DD + +  +  A  
Sbjct: 192 KLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIRAAAD 251

Query: 240 HALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             L ++T+      +  D+  L++ +    +  +EV   G   EV     G     N L+
Sbjct: 252 AGLNVRTV-----GRKGDYLTLKRVEHFRHKQLIEVHHDGVIHEVDIPLAGDFQVANALV 306

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+         TA+KAL       GR +      N G    +D  Y   P +++   +
Sbjct: 307 AAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKN-GALAYVD--YAHKPDALE---N 360

Query: 359 VLSQISPHGEGRRIAVLG 376
           VL+ + P   GR I V G
Sbjct: 361 VLTSVRPFTSGRIITVFG 378


>gi|114566361|ref|YP_753515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337296|gb|ABI68144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 453

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 21/191 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           ++A   P     DF L  V  G   V + T  +       IPV G         ++ +A 
Sbjct: 56  YYAGGYPEVKRQDFDLLVVSPG---VPLETAPIRQAREQGIPVIG---------EVELAY 103

Query: 103 RLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            L+ KA   +AI+G+ GKTTT  +L   L+   +     G    +IG+PLT     +   
Sbjct: 104 ILKPKAVEFLAISGTNGKTTTTSLLHYILAQAGRNALAGG----NIGIPLTTLLDSISAG 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      +   RP+I  +  I P HL+    +E    AKA+IF   +   
Sbjct: 160 TIVVELSSFQL----ESSSSFRPYICGLLNITPDHLNRHKTMERYIEAKAKIFAQQKPGD 215

Query: 222 TIFLNYDDSFF 232
               NY+DS  
Sbjct: 216 YAVFNYEDSIL 226


>gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           130b]
          Length = 469

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 46/353 (13%)

Query: 63  KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +VV       N   + +   L IPV         + + A+ A L      IAI G+
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPV---------IPRAAMLAELMRFRHGIAIAGT 123

Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +++  +A   +  ++  IG   N  G    L +      + + E   S   +
Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSCGANAQLGKSA----YFVVEADES---D 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYDDSFF 232
             FL   ++P +AV+T I   H+  + G  E++ +   E    L   G  +    D+   
Sbjct: 176 ASFL--FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEIC 233

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGY 290
            +L A       +   ++G  + A ++   W Q    S   V      K + +     G 
Sbjct: 234 RILPAIQ-----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGR 288

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347
           H   N L ++ I + L  D D+ ++ L  F   +G G+R++    + F     +I + Y 
Sbjct: 289 HNVLNALASIAIATELGVDDDSIVRGLQKF---QGVGRRFQMLGEKQFEKGAAIIVDDYG 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  + + I    ++ P  E R + V          +QS H    +VLSL +
Sbjct: 346 HHPQEILSTIDAFRRVWP--ERRLVHVF--QPHRYTRTQSLHRQFVDVLSLSD 394


>gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dyadobacter fermentans DSM 18053]
 gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans
           DSM 18053]
          Length = 491

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 133/351 (37%), Gaps = 44/351 (12%)

Query: 10  LLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +L ++ G   G +  G+    V  I +DSR + P   F A++G   DGH FI  A   GA
Sbjct: 6   ILSSLLGEVKGAIIHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAADLGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
             V +  + +       I    V+D   A+  +A A       K  ++ +TG+ GKT+  
Sbjct: 66  --VAILCEELPEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGTNGKTSVA 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVDVDFGIFELG 168
             L     ++      + +  N I    +P T            LA+M       +F   
Sbjct: 124 TFLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEV 183

Query: 169 MSHLGEIRFLTHLVRPHIA--VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            SH      +T L   H A  + T I   HL      +    AK   F+ L K+    +N
Sbjct: 184 SSHSVAQHRITGL---HFAGGIFTNITHDHLDFHKTFDNYIKAKKGFFDALPKSAFALVN 240

Query: 227 YDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            DD       +  KA+     ++T+ +F           K K  S+ +   + +   S E
Sbjct: 241 IDDRRGTVMVQNTKARVETYSLQTLATF-----------KGKIISD-TLAGMHMDINSQE 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V    IG   A N+L   G   +L    +  +  LS      GR +++  A
Sbjct: 289 VWFRVIGRFNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSA 339


>gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
 gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
          Length = 491

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 192/458 (41%), Gaps = 69/458 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR ++  +AF  IKG  +DGH+FI   V KGA  VVV  D+        +    VDD  
Sbjct: 29  DSRKVSDGDAFVCIKGAGFDGHEFIRDVVSKGAVAVVVMEDVEVDEDVTVVK---VDDTR 85

Query: 93  GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            AL  ++         K   + ITG+ GKTTT  M+   L S+      IG+    IG  
Sbjct: 86  LALACMSADYFGNPAEKLITVGITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDE 145

Query: 151 LTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRP---HIAVITTIA 193
           +T A+      + + E              + +S  G    + H V        + T I 
Sbjct: 146 VTPAKNTTPESYVVQETFAKMVEQGCKCVVMEVSSQG---LMLHRVSGFTFDYGIFTNIE 202

Query: 194 PAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           P H+  +     ++    K+ +   L++     +N D  F + +  + H   I+T   +G
Sbjct: 203 PDHIGPNEHKDFDDYLHCKSML---LKQCKHGIVNMDADFIDRV-LEGHTCDIET---YG 255

Query: 252 KSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            + + DF+ +  K  ++   + V   L+GK    V  H  G     N L  + I S  T 
Sbjct: 256 VNGDYDFKAQDIKLFTKPGCLCVSYDLKGKMDFPVEIHVPGMFSVYNSLCAIAICSHFTE 315

Query: 309 DVD---TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           DV+   TA++ + V      +G+     +++ F  +ID ++NA   S+++ ++ L Q +P
Sbjct: 316 DVEKIQTALENVKV------KGRVEIIPISKRFTLMIDYAHNA--MSLESLLTSLKQYNP 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               R + V G  C  G  S+    ++ EV S        LS F ++   +  PR     
Sbjct: 368 K---RLVTVFG--CG-GNRSKERRFEMGEVSS-------RLSDFTIVTSDN--PR----- 407

Query: 426 YSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           + E MD +  + +     DG+ V V        Y ++N
Sbjct: 408 FEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILN 445


>gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
 gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
          Length = 491

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S+DSR I     F A++G   DG  FI  A+ +GA +V+  T   A  G + +   
Sbjct: 20  VQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIKMHAQ 79

Query: 87  GVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             + ++  L  L   +A +     ++   +I ITG+ GKTT   +L  AL  +    A +
Sbjct: 80  VAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVKNAQM 139

Query: 141 GSYNN 145
           G+  N
Sbjct: 140 GTIGN 144


>gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 469

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 46/353 (13%)

Query: 63  KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +VV       N   + +   L IPV         + + A+ A L      IAI G+
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPV---------IPRAAMLAELMRFRHGIAIAGT 123

Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +++  +A   +  ++  IG   N  G    L +      + + E   S   +
Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSCGANAQLGKSA----YFVVEADES---D 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYDDSFF 232
             FL   ++P +AV+T I   H+  + G  E++ +   E    L   G  +    D+   
Sbjct: 176 ASFL--FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEIC 233

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGY 290
            +L A       +   ++G  + A ++   W Q    S   V      K + +     G 
Sbjct: 234 RILPAIQ-----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGR 288

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347
           H   N L ++ I + L  D D+ ++ L  F   +G G+R++    + F     +I + Y 
Sbjct: 289 HNVLNALASIAIATELGVDDDSIVRGLQKF---QGVGRRFQMLGEKQFEKGAAIIVDDYG 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  + + I    ++ P  E R + V          +QS H    +VLSL +
Sbjct: 346 HHPQEILSTIDAFRRVWP--ERRLVHVF--QPHRYTRTQSLHRQFVDVLSLSD 394


>gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
 gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
          Length = 465

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 122/302 (40%), Gaps = 42/302 (13%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG 141
           IPV    D+LG          L    T +   G+ GKT+T  M  +AL +  +  +  IG
Sbjct: 94  IPVIRRSDLLG---------ELMEGYTQMLFAGTHGKTSTTSMAVVALQAAGEDPSFAIG 144

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              N  G   T A       F + E   S    +R+     RP IAVIT I P HL  F 
Sbjct: 145 GQLNRAG---TNAHHGSGAVF-VAEADESDGSLLRY-----RPDIAVITNIEPDHLDYFG 195

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--- 258
             E       +  + +  TGT+ +  DD        ++   G+ T+  +G   +      
Sbjct: 196 DAETYYKVFDDFADRITDTGTLIVCLDDESAAECGVRALERGV-TVVGYGTMTHPSIPNA 254

Query: 259 -QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVD--TAI 314
             +  W+  ++ S ++V L G  M   H  I G HM  N +  L  V+ +TA  D     
Sbjct: 255 AHVVDWRTENDLSVVKVNLNGTEM-TYHLSIPGKHMVLNSVAAL--VAGVTAGADPFALA 311

Query: 315 KALSVFHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           + LS F    G  +R+  R  L+ G  T + + Y  +P  + A +      +  G G R+
Sbjct: 312 EGLSGF---TGVRRRFELRGELSDG--TRVYDDYAHHPTEVDAVLK-----AAKGTGARV 361

Query: 373 AV 374
            V
Sbjct: 362 VV 363


>gi|146318130|ref|YP_001197842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 05ZYH33]
 gi|158514131|sp|A4VTK3|MURD_STRSY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145688936|gb|ABP89442.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           05ZYH33]
          Length = 449

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
           A L S   I+ ITGS GKTTT  M+   L++ KK     G    +IG P  ++A+     
Sbjct: 106 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCG----NIGYPASSVAQTATAE 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIAV+T +  +H+      E+  +AK  I   +   
Sbjct: 162 DTLVMELSSFQL----MGTESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAE 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279
             + +N++    + L  ++ A    T+  F   +  D   L   K   +  ++       
Sbjct: 218 DFVVINFNQKEAKELAGQTKA----TVVPFSTQEVVDGAYLADGKLYFKGEYI------- 266

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            M+    G+ G H  +N L T+ +  +L  D     ++LS F
Sbjct: 267 -MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAF 307


>gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
 gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
          Length = 495

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +     
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I +TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 143 YNN 145
             N
Sbjct: 147 TGN 149


>gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
 gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
          Length = 483

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 154/403 (38%), Gaps = 68/403 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA---------VQKGAGLV--VVNTDMV 75
           + G++ DSR + P   F  I+G   DGHD+ + A          ++  GL   +V  D  
Sbjct: 21  ITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAGAAAILCERAIGLENEIVCHDTH 80

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            + G +    +G             A RLR    ++ +TG+ GKTT   M+   L S   
Sbjct: 81  YAYGIVCGNWYG-----------NPARRLR----LVGVTGTNGKTTVSYMVKHILESAGH 125

Query: 136 TYACIGSYNNHIG-----------VPLT----LARMP-VDVDFGIFE-----LGMSHLGE 174
               IG+ +N IG            PL     LARM     ++ + E     L    L  
Sbjct: 126 QTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVMECSSHALDQQRLAG 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +RF +          T +   HL     +E    AK ++F   +      +N DD++ E 
Sbjct: 186 LRFAS-------VGFTNLTQDHLDYHGDMESYYHAKKKLFSMCDAAA---VNMDDAYGER 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L A+   +   T +S   S  ADF  +  +   + S   +  +G    V     G     
Sbjct: 236 LAAEVRHICPVTTFST-VSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLPIPGDFSVA 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +    +   L   ++ A + L+      GR +     L  G   ++   Y  +P  ++
Sbjct: 295 NAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIE----VLPTGTDYVVIRDYAHSPDGLE 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             I+ + + +    GR + + G  C  G   ++    +AE+++
Sbjct: 351 KIITTMKKFA---RGRVVTLFG--C-AGNRDRTKRKKMAEIVA 387


>gi|109899819|ref|YP_663074.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas atlantica
           T6c]
 gi|122971620|sp|Q15Q18|MURC_PSEA6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109702100|gb|ABG42020.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoalteromonas atlantica
           T6c]
          Length = 484

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 60/406 (14%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSS 132
           V +   + IPV    ++L  L       R R     IAI G+ GKTTT  ++    A + 
Sbjct: 93  VNAANEMRIPVIRRAEMLAEL------MRFRHG---IAIAGTHGKTTTTSLIATIFAQAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T+  IG   N  G   T AR+     + I E   S         HL +P ++V+T I
Sbjct: 144 LDPTF-VIGGLLNSAG---TNARLGSS-QYLIAEADESDAS----FVHL-QPMVSVVTNI 193

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SF 250
            P H+  + G  +++     +    L   G   L  DD     L  +     IK  Y ++
Sbjct: 194 EPDHMETYQGDFQKMQDTYIDFLHNLPFYGLAVLCIDDPVITQLLPR-----IKRKYLTY 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G S+ AD +    K    QS   ++ +  + ++VV +  G H   N+L  L  +++ T +
Sbjct: 249 GYSEVADVRATHVKHTFNQSEFTLKRKDHQDIQVVVNAPGKH---NVLNALAAIAVATDE 305

Query: 310 --VDTAIK-ALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              D AI  AL+ F    G G+R+      A  +G   L+D+ Y  +P  ++A I+V   
Sbjct: 306 NIEDAAITAALANF---SGIGRRFEMLGEFATGEGDVLLVDD-YGHHPTEVEATIAVARN 361

Query: 363 ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R   +  D   +  LSQ   +D+  +L +Y+     + G    
Sbjct: 362 NWPDRRLVMAYQPHRYSRTRDLYEDFVRV--LSQ---VDVLLLLDVYSAGEEKIEGADSK 416

Query: 413 ALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +L  ++ +   +   Y    + L   +  +L D D+++ + + + G
Sbjct: 417 SLCRSMRQRGQLEPIYVADKNELPKLLADNLKDQDILLTQGAGNIG 462


>gi|309811809|ref|ZP_07705583.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
 gi|308434230|gb|EFP58088.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
          Length = 944

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 16/145 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---------- 155
           S+  I+A+TG+ GKTTT  ML   +  + K      +    I   L + R          
Sbjct: 498 SRVPIVAVTGTNGKTTTSRMLAHIMKGLGKKVGMTSTDGIVIDERLLITRDASGPKSAKM 557

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
                 VDF + E+     G +R      R  IAV+T I   HL     + +E++A+ K 
Sbjct: 558 VLQNPRVDFAVLEVARG--GILREGLGYDRNDIAVVTNIQSDHLGMRGINSLEDLANVKQ 615

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLK 236
            I E + + G   LN DD +   ++
Sbjct: 616 VIVEAVPRDGFAVLNADDEYVRRMR 640


>gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR +AP + FFA  G   DG  +I  AV++GA  VV           + +P   V 
Sbjct: 24  LTSDSRRVAPGDVFFAYVG-DADGRSYIADAVERGAAAVVYEAAGFTWPAQIDVPHLAVT 82

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGS 142
           D+     ++A +   +       +A+TG+ GKT+    L IALS +    T   IG+
Sbjct: 83  DLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVIGT 139


>gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 478

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 32/369 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR++ P   F A+ G   DG  FI  A+  GA  V+V       +     P  
Sbjct: 12  ITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVEV----PPQV 67

Query: 87  GVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
            +        + A+ A     A    + A+TG+ GKT+T E     ++ +    A IG+ 
Sbjct: 68  ALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGTL 127

Query: 143 ------YNNHIGVPLTLARMPVDVDFG-IFELGMSHL-------GEIRFLTHLVRPHIAV 188
                 ++N  G+  T     +  D   + E+G++H        G  +     V+   A 
Sbjct: 128 GIIAPGWDNSGGL-TTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLMAAA 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T +   HL   + ++  A AK  +F E L +  T  +N D              GI T+
Sbjct: 187 FTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI-TV 245

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             +G++               Q  +++++ G+++ +     G   A N L  LG+     
Sbjct: 246 LGYGRAARDLRLAAARPTADGQE-LDLEIMGRAVTIRLPLAGRFQADNALAALGLALACG 304

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           AD  TA++AL       GR ++   A   G    +D  Y   P +++   +VL  + PH 
Sbjct: 305 ADPVTALEALGSLEGVHGRLQKV-AARAHGAPVYVD--YAHTPDALE---TVLKALRPHA 358

Query: 368 EGRRIAVLG 376
             R + V G
Sbjct: 359 SRRLVVVFG 367


>gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya dadantii Ech703]
 gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703]
          Length = 494

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 25/229 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
           P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D  +  G+  
Sbjct: 18  PERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAIVAQADAASPNGTCC 77

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIK 134
               +PV  +DD+   L+  A+A R     +    +I +TG+ GKTTT ++L     ++ 
Sbjct: 78  ELHGVPVVYLDDLNQRLS--ALAGRFYQHPSDTLQLIGVTGTNGKTTTAQLLAQWTQALG 135

Query: 135 KTYACIGSYNN----HIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFLTHLVRPH--- 185
           KT A +G+  N    H+          VDV      F    + +  +   +H +  H   
Sbjct: 136 KTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVAAMEVSSHGLVQHRVE 195

Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                 A  T ++  HL     +    +AK  +F    + G   +N DD
Sbjct: 196 DVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFS-EHRVGQAVINADD 243


>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 488

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 23/223 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++  S+++    AF  IKG   DGH++I  A+++GA L++V+     S     +   
Sbjct: 24  IKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYDTSKLKDKVLFI 83

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              +   AL+   ++A      +    +I +TG+ GKT+T  M+   L         IG+
Sbjct: 84  KTSNTRKALS--VISANFFEHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHKVGLIGT 141

Query: 143 YNNHIGVPLTLAR--MPVDVDFG--IFELGMSHLGEI--RFLTHLVRPH--------IAV 188
             N IG     A+   P   D     FE+   ++  +     +H +  H        + V
Sbjct: 142 VKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVVMEVSSHSLELHRVDCCDFDVGV 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            T +   HL     +E   +AK ++FE  +K     +N DD +
Sbjct: 202 FTNLTQDHLDFHGTMENYFAAKLKLFEMSKKR---VVNVDDEW 241


>gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
          Length = 473

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 150/369 (40%), Gaps = 48/369 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158
           +R K+T+ A+ G+ GKTTT  M+   L +  +  T      I SY ++       AR+  
Sbjct: 105 MRLKSTV-AVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLG- 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + ++ + E   S    +R    L     AV+T I P HL ++   +++  A  E  E + 
Sbjct: 156 NSEWMVVEADESDGSFLRLDGTL-----AVVTNIDPEHLDHYGSFDKVKDAFVEFVENVP 210

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   L  D    + +  +      + I ++G S  AD +    +     +  +VQ++ 
Sbjct: 211 FYGAAMLCLDHPEVQAILPRVQD---RRIVTYGFSAQADIRGENVQPIPGGNRFDVQIRE 267

Query: 279 KSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331
           +   +    GI     G H   N +  +G+   +  D  T     + F   + R  K   
Sbjct: 268 RDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFTKVGE 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382
            A+  G  T+ID+ Y  +P  +KA ++         V++ + PH    R   L D+  M 
Sbjct: 328 IAVGGGSATVIDD-YGHHPVEIKAVLAAAREGAKGRVIAVVQPH----RFTRLRDL--MD 380

Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQS 439
           E  Q+F+  D+     +Y      + G     L   L R  H + +  E  D L   I +
Sbjct: 381 EFQQAFNDADIVYAAPVYPAGEQPIEGVDSAELVAGLKRRGHRNAATVEGADDLARLIAA 440

Query: 440 SLVDGDVVV 448
            +   D+++
Sbjct: 441 DVQADDMII 449


>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 491

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 160/425 (37%), Gaps = 45/425 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +    P   V+ I+ DSR +     F  I G   DGH F   A + GA 
Sbjct: 3   LNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            VV    +      ++IPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AVVAEKPV-----DVTIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFELG 168
           ++   +    +    IG+    IG          P +L             V   + E+ 
Sbjct: 118 LVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222
              L + R   +     +AV   ++  HL     +EE A AK+ +F  L           
Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKI 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD     ++  + A     + +FG  +NADF+    +  S  S   +       +
Sbjct: 236 AVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGSTFNLTTPAGKFK 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L  +     L   ++ AI  +      +GR +       Q F  ++
Sbjct: 292 LKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAG--QDFPVIV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y+  P  +   ++VL  I      R   V+G  C  G+  +     +A++   Y  +
Sbjct: 350 D--YSHTPDGL---LNVLQTIDEFANKRVFVVVG--C-GGDRDKGKRPQMAKIAVQYATN 401

Query: 403 HVWLS 407
            V+ S
Sbjct: 402 PVFTS 406


>gi|226941967|ref|YP_002797041.1| UDP-N-acetylmuramate--L-alanine ligase [Laribacter hongkongensis
           HLHK9]
 gi|254766007|sp|C1D5L5|MURC_LARHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226716894|gb|ACO76032.1| MurC [Laribacter hongkongensis HLHK9]
          Length = 469

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 150/375 (40%), Gaps = 41/375 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++  AL  + +  T+         IG  LT A     +  G + + 
Sbjct: 108 IAIAGTHGKTTTTSLVASALGRAGLDPTFV--------IGGRLTAAGSNARLGSGDYLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   H+  +    E +  A  +  + L   G   L  
Sbjct: 160 EADESDASFLC--LSPVMAVVTNIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAVLCI 217

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
           DD    E+L   +     + + ++G + +AD +    +  + Q   +V  Q +  E  H 
Sbjct: 218 DDKHVREILPFVT-----RPLTTYGLTPDADVRADNIRPVAGQMLFDVVWQQQGEEQRHP 272

Query: 286 ---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
              +  G H   N L  + I     AD+      L+ F     R +RY   AL  G    
Sbjct: 273 VTLNLPGRHNVLNALAAIAIGLECGADIGAIAAGLTEFSGVGRRFQRYGDIALPAGGQAT 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           + + Y  +P  M A ++      P    RR+ VL         ++    D   VLS  + 
Sbjct: 333 VVDDYGHHPVEMAATLAAARGAFPE---RRL-VLAFQPHRYTRTRDLFEDFVGVLSTVDA 388

Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G   +   D  AL R++ V       + E +  L   +   L DGDVV+  
Sbjct: 389 LLLAEVYPAGEAPIVAADGRALARAVRVAGKVEPVFVERIADLPATLLDQLQDGDVVLTM 448

Query: 451 SSNSCGFY--RLINL 463
            + S G    RL+ L
Sbjct: 449 GAGSIGQTPGRLVTL 463


>gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida 3523]
          Length = 417

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 50/282 (17%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ I 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCIV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  +  ++P HL  +   EE   +K      L K    F 
Sbjct: 150 EVSSFQID----LFNCVRFDLGCVINVSPDHLDRYQNFEEYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK    +   + A ++             E  L G+      
Sbjct: 202 VYD----------VHNNGIKYAGEYQIIRGAIYR----GSIKLLDITETNLYGE------ 241

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLID 343
                H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I+
Sbjct: 242 -----HNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGITYIN 291

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           +S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 292 DSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328


>gi|294085900|ref|YP_003552660.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665475|gb|ADE40576.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 473

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 29/254 (11%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P +AV+T I P HL +    E + +A       +   G   L  D    + + A    
Sbjct: 174 LKPTVAVVTNIDPEHLDHHGSFEALETAFLNFVSSIPFYGFATLCIDHPAVQRMMAH--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SME----VVHHGIGYHMAQ 294
           +  + I ++G S NAD +    +        +V L  +    ME    V+   +G H  Q
Sbjct: 231 IKDRRIITYGMSANADVRATNLRVEGRNMLFDVLLSDRLVGEMERIDNVLFPMLGDHNVQ 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   +  D      +L+ F    G G+R+         T+ID+ Y  +P  +K
Sbjct: 291 NCLAAIAVALEMNIDAKKIKDSLAAFG---GVGRRFETKGVSDGVTIIDD-YGHHPVEIK 346

Query: 355 AAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           AA+           +++ + PH   R   +  D C  G  + +  + +A+V   Y     
Sbjct: 347 AALQAGRMMCGDNKLIAVVQPHRYSRLADLFTDFC--GCFNDADDVLVADV---YAAGET 401

Query: 405 WLSGFHVLALKDAL 418
            + GF   AL + L
Sbjct: 402 PIEGFDKAALVEGL 415


>gi|167721346|ref|ZP_02404582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 152

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 7/74 (9%)

Query: 322 PKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMC 379
           P +GR +  R A       T+ID++YNANP SM+AAI VL +Q +P     R+ V+G+M 
Sbjct: 1   PVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMG 55

Query: 380 EMGELSQSFHIDLA 393
           E+G+   +FH ++ 
Sbjct: 56  EVGDEGPAFHREIG 69


>gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 455

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           + +I +TGS GKTT   ++ + L   KK     G    +IGVP  T+A+     D  + E
Sbjct: 113 SELIGVTGSNGKTTVTTLIQLMLDDNKKHAYVAG----NIGVPATTVAQKATAEDKIVME 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I  L     PHIAV+  I  +HL      E   + K  I +   K   + +N
Sbjct: 169 LSSFMLAGIDRL----HPHIAVLNNIFASHLDWHKTRENYVNDKMNITKNQTKDDFLVIN 224

Query: 227 YDDSFFELLKAKSHA 241
           +D++ ++ L  ++ A
Sbjct: 225 WDNTEWQELAKRTQA 239


>gi|319651887|ref|ZP_08006010.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
 gi|317396379|gb|EFV77094.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
          Length = 431

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 51/336 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TG+ GKT+T  +L   +   K T   IG             +   + ++ +FE  
Sbjct: 102 TSIAVTGAHGKTSTTGLLAHVMRGAKPTSFLIGD---------GTGKGDKEAEYFVFE-- 150

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL++   P  A++T I   H   F+ IE++ SA  E+   + K   IF  
Sbjct: 151 ---ACEYRRHFLSYY--PDYAIMTNIDFDHPDYFANIEDVFSAFQEMSWQVNK--GIFAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + ++AK   +     Y FG  ++ DFQ R   + +E +  +V ++    E    
Sbjct: 204 GDDEQLQKIQAKVPVV----FYGFG--EDNDFQARNVVKTTEGTTFDVFVRNTFFETF-- 255

Query: 287 GIGYHMAQNMLMTLGIVSIL-TADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLID 343
            I  +   N+L +L ++++    ++D  I  + L  F   EG  +R+      G   +ID
Sbjct: 256 SIPAYGDHNVLNSLAVIALCHYEEIDAKIVQEQLLSF---EGVKRRF-SEKKVGSQVIID 311

Query: 344 ESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P  +KA +    Q            PH   R  A L D      L+   +  L 
Sbjct: 312 D-YAHHPTEIKATVEAARQKYPEKDVVAVFQPHTFTRTQAFLDDFASSLNLADKVY--LC 368

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           E+      +H  L+   +  LK  +P +  ++  ET
Sbjct: 369 EIFGSARENHGKLT---IDDLKAKIPNAQILNEEET 401


>gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           uberis 0140J]
 gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           uberis 0140J]
          Length = 453

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L S+A IIAITGS GKTTT  M+   L+   K+    G    +IG P +   M     
Sbjct: 106 AYLISEAPIIAITGSNGKTTTTTMIADVLNHGGKSALLSG----NIGFPASEVAMTASQD 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D    EL    L  I+       PHIA+IT + P HL      +    AK  I   +   
Sbjct: 162 DILTMELSSFQLMGIKDF----HPHIALITNLMPTHLDYHGSFDAYIQAKWNIQNNMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN +    + L  K+ A
Sbjct: 218 DVLILNAEQDQTKELAQKTQA 238


>gi|119358487|ref|YP_913131.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
 gi|158512610|sp|A1BJY0|MURD_CHLPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119355836|gb|ABL66707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 464

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFG 163
           KA II ITG+ GKTTT  ++     +   T+        +IG P +   L   P DV   
Sbjct: 104 KARIIGITGTDGKTTTATLVHRIFETDGMTHRYRAFSVGNIGQPFSSRVLTMRPEDV--A 161

Query: 164 IFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221
           + EL    L G   F     RP ++VIT I P HL  + G +   A  K  I+    K  
Sbjct: 162 VIELSSYQLEGCCTF-----RPDVSVITNITPDHLDRYEGELHNYAQTKYRIYAHQGKED 216

Query: 222 TIFLNYDDSFF 232
           T+  N DD   
Sbjct: 217 TLVYNDDDPLL 227


>gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
 gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
          Length = 459

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR 155
           K T+I +TG+ GK+T  ++L   LS   +    IG+    IG            PLTL R
Sbjct: 85  KLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCCLIGTGRIVIGDEVRFSPNTTPDPLTLTR 144

Query: 156 MPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           +  +     +D  I E+    L   R    L    +AV+T +   HL     ++    AK
Sbjct: 145 LLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF--DLAVLTNLKQDHLDYHKTLKAYQRAK 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             +FE L++ GT  LN DD   +   ++ H    + ++++G+ 
Sbjct: 203 FMLFEKLKEKGTAILNQDDPVTQRWLSQLH----RPVFTYGRD 241


>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 539

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GI+ DSR + P   F A+ G   DG  FI  AV++GA  ++         G    P+ 
Sbjct: 75  ISGITADSRQVMPGWVFAALPGQKTDGRRFIADAVERGAAAILAPAGTAWPPGVPPRPMI 134

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              +    L  +A         TI AITG+ GKT+T + L    + + ++ A +G+
Sbjct: 135 QDAEPRRLLALMAARLAGAQPHTIAAITGTNGKTSTADFLRQIWTLLGRSAASLGT 190


>gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
 gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
          Length = 467

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 14/165 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           ++ + G+ GK+TT  M+T+ L  + +  T+A IG+    +GV           D  + E 
Sbjct: 118 VVTVAGTHGKSTTTSMVTVLLQGAGLDPTFA-IGANVPSLGVNAASGTS----DIFVAEA 172

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   +  FL +  RPHIAV+T + P HL  +   E +  +     E L   G +    
Sbjct: 173 DES---DGSFLNY--RPHIAVVTNVEPDHLDYYGTAEAVYESFDSFTELLPADGVLVACA 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           DD     L  ++   G   + ++G +++A  QLR         W+
Sbjct: 228 DDPGARALAERTRTRGNTRVVTYGTAEDA--QLRLHDGGPGDVWV 270


>gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
 gi|259509786|sp|C3KVT7|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
          Length = 458

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   +++L+
Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGAYLSNNKLTMQGKEVCDSK---DIKLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
 gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
          Length = 520

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 147/388 (37%), Gaps = 63/388 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+RS+A  +AFFA      D   FI  A+++GA  V+V  +     G+L   V      +
Sbjct: 34  DTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFG--GTLDASVA---HAV 88

Query: 93  GALNKLA---VAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145
            ALN+LA    +A  R  +     + ITG+ GKT+  + +  ALS++    A +G+    
Sbjct: 89  PALNELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGTLGTG 148

Query: 146 ------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRPHIAV 188
                 H G      P     +    D G   + M       H G +          IAV
Sbjct: 149 LVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF----DIAV 204

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL          +AK  +F   E    + +N DD+    L A +H       Y
Sbjct: 205 FTNLTQDHLDYHGTFAAYETAKTRLFAWPELRAAV-INRDDAAGRRLLASTHGHARTIAY 263

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNMLMTLG 301
              +    D   +   Q    +W    L   ++     G  +H+       A+  + TLG
Sbjct: 264 GI-EGGQGDAHAKGAPQAD--AW----LTASNVRATATGTAFHLNTSDWGHAEVEVQTLG 316

Query: 302 IVSI----------LTADV--DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNA 348
           + ++          L ADV  D A+  L+      GR +R    L N     +ID  Y  
Sbjct: 317 LFNVSNLLAVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVID--YAH 374

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P +++  +  L  I+    G  + + G
Sbjct: 375 TPDALEKTLEALRPIATARGGELVCMFG 402


>gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 12/163 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFG 163
           ++A I+AITGS GK+T    +T  +  + +      +   ++G P    L     + D  
Sbjct: 104 TRAPIVAITGSNGKST----VTTLVGEMARAAGLRAAVGGNLGTPALDLLPETGPEPDLY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L       H   P  A I  ++P HL         A+AK  IF  +    T+
Sbjct: 160 VLELSSFQLAAC----HDFHPRAAAILNLSPDHLDWHGDYAAYAAAKTRIFRAMGAGDTL 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            LN  D+F   L  +  A G++  + FG +   D  +   + C
Sbjct: 216 VLNAGDTFTAALPPQVPA-GVRVQF-FGGADEHDASIAGDRLC 256


>gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 494

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 149/381 (39%), Gaps = 40/381 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+ P   + GI++DSR +     F A+ G    G  F   A+  GA  ++ +      + 
Sbjct: 19  GVDP--MIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVA 76

Query: 80  SL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123
            L    ++ +  V+D   AL   A         T++A+TG+ GKT+              
Sbjct: 77  ELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWVELGH 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVDFGIFELGMSHLGEIRFLT 179
           + + +  + ++ +++     N+    P+TL    A+              SH  E R L 
Sbjct: 137 QAVNLGTTGVEGSWSH--PLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGLEQRRLD 194

Query: 180 HLVRPHIAV--ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLK 236
            +   H+A    T     HL      E   +AKA +F   L   G   +N DD   E ++
Sbjct: 195 GV---HLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMR 251

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A + A G + + S G+    D  L   +  +    M      K  +   + IG   A+N+
Sbjct: 252 AVAAARG-QEVISVGRGLG-DLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENI 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKA 355
           L+  G+V     D       L   H +  RG+    A  + G    +D  Y   P ++  
Sbjct: 310 LLACGLVIASGEDPQAVFDTLP--HLQTVRGRMQLAATRENGATVFVD--YAHTPDAVAT 365

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           AI  L    PH  GR +A++G
Sbjct: 366 AIKAL---RPHVLGRLVAIVG 383


>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 511

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 153/380 (40%), Gaps = 54/380 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82
           V G++ DSR++   E FFA+ G + DG  +I  A+  GA  VV     ++D   ++  ++
Sbjct: 48  VRGVASDSRAVLSGEVFFALAGANTDGARYIDQAIANGAVAVVGEQFPDSDHRVALVRVA 107

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSI-- 133
            P   +      +         R  ATI A+TG+ GKT+         + L  A +SI  
Sbjct: 108 NPRRALALAAARMFP-------RQPATIAAVTGTSGKTSVAAFTRQIWQRLGFAAASIGT 160

Query: 134 -------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLT 179
                  +  Y  + + +     P+ L R   ++D  I   G++HL       G  +F  
Sbjct: 161 IGLVTPQRSVYGSLTTPD-----PIALHR---EIDQ-IAGEGVTHLALEASSHGLDQFRL 211

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAK 238
             VR   A  T ++  H+     +    +AK  +F  L    G   ++ D    E + A 
Sbjct: 212 DGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGAAVISADHEHSEAVIAA 271

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           + A G++ I + G++ N    +R      +     + V+ +G+   +    +G    +N 
Sbjct: 272 ARARGLRLI-TVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRERGLRLPLVGEFQIENA 330

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+      D +    AL   H +  +G+        G    +D  Y   P ++  A
Sbjct: 331 LVAAGLAIGTGGDAEQVFAALQ--HLEGAKGRLELVGDRNGAPIFVD--YAHKPDALAKA 386

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L    P+ + + I V G
Sbjct: 387 LQAL---RPYAKRKLIVVFG 403


>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
          Length = 445

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNHRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + + A  K +IF G    G   LN DD+F   +K        + +  F     ADF L +
Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 263 ----WKQCSEQ--SWMEVQLQG 278
                KQ  E   +  ++ LQG
Sbjct: 252 ETGTLKQGDEDLIATQDIPLQG 273


>gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
 gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
          Length = 458

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   +++L+
Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGAYLSNNKLTMQGKEVCDSK---DIKLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
 gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
          Length = 470

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 124/300 (41%), Gaps = 45/300 (15%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           LA   RLR+    IA+ G+ GKTTT  +L TI   +       IG   N  G    L + 
Sbjct: 111 LAELMRLRNG---IAVAGTHGKTTTTSLLATIFTEAGYDPTVIIGGRLNAYGAGARLGQ- 166

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                 G + +  +   +  FL   + P  +V+T +   HL +++ +  I  A  +   G
Sbjct: 167 ------GEYLIAEADESDGSFLC--LSPIASVVTNVDADHLDHYADLAAIDDAFVDFLNG 218

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQ 275
           +   G   +  DD     L  + +    + I ++G +  A  +LR K  +    S   V 
Sbjct: 219 IPFYGVNVVCLDDPGVARLLPRVN----RPILTYGVTSQA--RLRGKILETGAASRFSVT 272

Query: 276 LQGK---SMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAI--KALSVFHPKEGRGKR 329
           L GK    M + H G       N+L  LG + + L A ++  +   AL+ F    G G+R
Sbjct: 273 LDGKDLGEMRLAHPG-----RHNVLNALGAIGLSLEAGIELPVIAAALAKFG---GVGRR 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMC 379
           +     +    ++D+ Y  +PA ++A ++    +           PH   R  A+ GD C
Sbjct: 325 FERKGERNGVVVVDD-YGHHPAEIRATLATARTVYPDRRLVVAFQPHRFSRTKALFGDFC 383


>gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
 gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
          Length = 473

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 25/193 (12%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAIT 114
           +GA LVV       +  +  + G   +PV+G          + +A RLR    A  +A+T
Sbjct: 72  EGAELVVTAPGWKPDKPLFQAAGRAGVPVWG---------DVELAWRLRGPDAAPWLAVT 122

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT +ML   L +     A +G    +IGV L  A +  +  + +  + +S   +
Sbjct: 123 GTNGKTTTVQMLAAILKAAGLRTAAVG----NIGVSLLDAVLG-EEKYDVLAVELSSY-Q 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           + +   L R H A +  +AP HL     +E  A+ K  ++EG  +   ++   D +  +L
Sbjct: 177 LHWAPSL-RAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEG-NRVACVYNVADKATEDL 234

Query: 235 LKAKSHALGIKTI 247
           ++A     G + +
Sbjct: 235 VRAADVEEGCRAV 247


>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
          Length = 492

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 115/276 (41%), Gaps = 41/276 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR + P   F  + G   DGH F   AV+ GA  V+   D+      + +P  
Sbjct: 23  ITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVLSEQDLDVPATIVKVP-- 80

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              D   A+  LA  +      +  +I +TG+ GKTTT  ++   L    K    IG+ +
Sbjct: 81  ---DTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTHLIDKILRDQSKQTGLIGTIH 137

Query: 145 NHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG               +  +  RM  V+ D+ I E+  SH   LG +R        H
Sbjct: 138 MRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVS-SHALELGRVRG----CEIH 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
            AV T +   HL     +E    AK+ +F  L      ++  T  LN DD   EL    +
Sbjct: 193 TAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASELYATVT 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            A     + ++G  + AD + ++ +  S+ +   V+
Sbjct: 253 PA----RVITYGIDQPADVRAKQIEITSKGTSFTVE 284


>gi|238060043|ref|ZP_04604752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp.
           ATCC 39149]
 gi|237881854|gb|EEP70682.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp.
           ATCC 39149]
          Length = 452

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 134/356 (37%), Gaps = 42/356 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + +TGS GK+TT  +++  L+++ +       +  +IGVPL    +P D D  + EL   
Sbjct: 114 VGVTGSKGKSTTSSLISHLLTAVDRPNV----FGGNIGVPLL--DLP-DADLYVLELSSY 166

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              ++        P +AV+T + P HL    G  E    K  +        TI +N  D 
Sbjct: 167 QCADL-----TDSPRVAVVTALFPEHLDAHGGEREYYRDKLNLLA--HGPQTIVVNGADP 219

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                   +  LG +     G                   W  +  +      V   +G 
Sbjct: 220 RL------AAELGDRPAVRAGSPDTTHVA----PGPDGTPWFHLGDRPLFPRAVLPLVGR 269

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNAN 349
           H   N+ + L +++ L  DV     AL+V     +G   R     +    T +D++   +
Sbjct: 270 HNEGNLCVALAVLAALGVDVVARADALAVAVAGFQGLAHRLTEIADPSGLTFVDDTLATS 329

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSG 408
           P +   AI          EGR + V+    + G         LAE  +++  I     SG
Sbjct: 330 PYAAMHAIDAY-------EGRPVTVIVGGADRGLDYAPLREHLAEREITVLGIPD---SG 379

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLIN 462
             ++A    LPR      +E +D L   ++ +  L   D VV+ S  +  + R  N
Sbjct: 380 QRIVATLAGLPRV----RAEVVDDLVAAVRRARELTPADGVVLLSPAAPSYGRFRN 431


>gi|221194726|ref|ZP_03567783.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185630|gb|EEE18020.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
          Length = 470

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 26/260 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + TI A+ G+ GKTTT  M+   L    +  ++   G    +     T  R     D+
Sbjct: 109 RGRKTI-AVAGTHGKTTTSSMIATMLDKMDLDPSFLIGGVVEGYD----TNGRNGSG-DY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S  G   +LT    P++ VIT I   HL ++  +E I     +    L+ + T
Sbjct: 163 FVCEADESD-GSFMYLT----PNVIVITNIEADHLDHYGTLENIEKTFCDFMRLLDPSET 217

Query: 223 IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGK 279
           + +N D+  + EL ++       + + S+G S+  D+  + R   Q  E         G 
Sbjct: 218 VIINGDNPHWVELARSTG-----RKVVSYGFSETCDYVCRARMRTQGIENPLSVTTPSGA 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++VV     G H   N    L    IL  D+  A +ALS F   +G  +R+    +   
Sbjct: 273 CIDVVLPASPGTHNIANACAALATADILGYDLSEAARALSQF---KGARRRFTHVGDICG 329

Query: 339 FTLIDESYNANPASMKAAIS 358
            T++D+ Y  +P  +KA +S
Sbjct: 330 ITVVDD-YGHHPTEIKATLS 348


>gi|154149379|ref|YP_001406492.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381]
 gi|153805388|gb|ABS52395.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381]
          Length = 479

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 34/297 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168
           II IT S GKT+ K  L   L    K      S N   G+   +   +  D    I E G
Sbjct: 163 IIQITASFGKTSIKNFLFELLKDDFKVQKTPRSVNTLNGIIRDINENLSYDTKIYIAEAG 222

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G+I+ +T  + P I ++  I   H+  F  IE I + K E      +    FL+  
Sbjct: 223 ARKNGDIKEITQFLNPQIVLVGEIGAQHIEYFKSIENIRATKLESLSS-NRLKHAFLHST 281

Query: 229 DSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                LLK  +++ +  K I +F  + N D                ++L+ KS E +   
Sbjct: 282 ----TLLKENETNTIYDKQIANF--TANLD---------------GIKLEMKSGEKIFAE 320

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           I G   AQN+   + I   L  + +   K     H  E R +  +   N+ F  +ID+S+
Sbjct: 321 ILGDFNAQNLAACILIAKFLGINAEKIAKNAKNLHSVEHRLQ--KIMTNEKF--IIDDSF 376

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNIS 402
           N N   M A+  ++     + + R++ +   + E   E+++   I + E+  L  I+
Sbjct: 377 NGNLKGMCASYDLVK----NYKSRKVIITPGIVEGTKEMNEILGIKINEIFDLVMIT 429


>gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
 gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
          Length = 498

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 30/327 (9%)

Query: 24  QGF---VNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASI 78
           +GF    +G+  D R +  P++ F A+ G  +D  +     + ++  GLV+V+ D   + 
Sbjct: 19  RGFYADCSGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLTEQRCGLVLVDYDDQRAY 78

Query: 79  GSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            S S+ PV  +  +L  L             TIIA+TG+ GKTT    L  +L+ + K  
Sbjct: 79  QSASVLPVLHLKTMLADL-AFGYYETPSDAMTIIAVTGTNGKTTVTRWLAQSLNQLGKKA 137

Query: 138 ACIGS--------YNNHIGVPLT-------LARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           A IG+           H G+          L        F    +  S +G  +     V
Sbjct: 138 AVIGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDTVCIEASSIGLEQRRLACV 197

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHA 241
              +A+ T ++  HL     +     +K  I           +N DDSF  E L    H 
Sbjct: 198 SIDVALFTNLSQDHLDYHGDMAAYGRSKM-ILASWPTLRLAVVNADDSFGVEFLAHVQH- 255

Query: 242 LGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              + I   + G    AD Q+       +   +E+++ G   ++    IG   A NM + 
Sbjct: 256 ---RNIDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQIDTPIIGEFNADNMALV 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326
              +  L  D     +AL+   P  GR
Sbjct: 313 FATLVRLGYDASEVKRALAGVTPAPGR 339


>gi|95930733|ref|ZP_01313466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133213|gb|EAT14879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 448

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 20/181 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATI 110
           GHD    AV + A L+VV+  +      L++PV    +D  +    ++  A+R    A +
Sbjct: 59  GHD---DAVFQQADLIVVSPGV-----PLTVPVLAKAIDRGIPVWGEVEYASR-HLTAPV 109

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT E++   L    K     G    +IGVPL  A    DVD+ + EL   
Sbjct: 110 IAITGTNGKSTTTELVGQMLRGCGKRVFVGG----NIGVPLIEA-AGQDVDYVVVELSSF 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  I  L     P  A++  ++  HL  +  +    +AK  IF          LN +D 
Sbjct: 165 QLETIDQL----HPRYALMLNVSVDHLDRYPDMAAYVAAKKAIFANQTADDIAVLNGEDE 220

Query: 231 F 231
            
Sbjct: 221 L 221


>gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae]
          Length = 515

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 111/280 (39%), Gaps = 53/280 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M       I   YA  G               P  ++ G+ +    
Sbjct: 145 IAIAGTHGKTTTTAM-------IASIYAQAGLD-------------PTFINGGLVKAAGV 184

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +AVIT I   H+  + G  E++          
Sbjct: 185 HARLGTSRYLIAEADESDASFLHL-QPLVAVITNIEADHMETYDGDFEKLKQTFISFLHN 243

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G + L  DD     L  +   +G + I ++G S +AD ++  +KQ   Q +  V  
Sbjct: 244 LPFYGRVVLCIDDPVVRSLLPQ---IG-RYITTYGFSDDADVRITSYKQRGNQGFFTVAR 299

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + ++ +  + +  G H A N    + + +    D    + AL  F   +G G+R+    N
Sbjct: 300 ENRADLAFILNAPGRHNALNATAAIAVATEEGIDDSAILTALKKF---QGTGRRFDLLGN 356

Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPH 366
                    +G   L+D+ Y  +P  + A I    +  P+
Sbjct: 357 FPLADVNGKKGSVMLVDD-YGHHPTEVDATIKAAKEGWPN 395


>gi|322421361|ref|YP_004200584.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
 gi|320127748|gb|ADW15308.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
          Length = 461

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 21/251 (8%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  M+   +A   I  T   IG   N +G    L +       G F + 
Sbjct: 108 VAVAGTHGKTTTTSMVATLLAKGGIDPTM-VIGGRLNSLGSNARLGQ-------GQFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL  L+ P IAV+T I   HL  +SGIEEI     E    +   G   L  D
Sbjct: 160 EADESDGSFL--LLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKVPFYGLAVLCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHG 287
           +     +  +      K   S+G S  ADF+    +     +      +G K  E+    
Sbjct: 218 NGNIADILPRVK----KRFTSYGLSAQADFRATDVRLSGFSTSFVAHHKGVKLGEITFSM 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L    +T  +    F    G G+R+          ++D+ Y 
Sbjct: 274 PGAHNVLNALAAIAVAMELDIPFETIQEGFKAFG---GVGRRFSLKGEVNGIMVVDD-YG 329

Query: 348 ANPASMKAAIS 358
            +P  ++A ++
Sbjct: 330 HHPTEIRATLA 340


>gi|196019058|ref|XP_002118918.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
 gi|190577726|gb|EDV18596.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
          Length = 456

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 14/258 (5%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIF 165
           KA  I ITG+ GK+TT  ++   L S     A  G    +IG+P L L       +  I 
Sbjct: 112 KANYIGITGTNGKSTTTSLINHILQSNNYKSALGG----NIGIPVLNLPNFNNSNEHYIL 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     L    + +IA + +I P HL  ++  E+  +AK  IF          +
Sbjct: 168 ELSSYQLD----LMLNYKFNIAALLSITPDHLDRYASFEDYKNAKLRIFNNQNHNDFAII 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + ++   E +  +      +TI      +     +   K     ++ E   Q  ++++  
Sbjct: 224 SLNNHINEGIYNQLIIKNTQTIIPTSSQQLLKKGISVIKDKIYDNYFEN--QAFNLDLPS 281

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H A+N+ M   I  I+  +    IK L+ +    G   R    L     + +++S
Sbjct: 282 SLIGPHNAENIAMAYTIAKIINLNSKQIIKNLNTY---IGLPHRMELFLKTEKLSFVNDS 338

Query: 346 YNANPASMKAAISVLSQI 363
              N AS K A+     I
Sbjct: 339 KATNIASTKEALRSFKNI 356


>gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 465

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 170/443 (38%), Gaps = 93/443 (20%)

Query: 64  GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA LVV        N +M+ +   L+IP      +LG +        ++     I + GS
Sbjct: 67  GANLVVYTAAVKEDNPEMIRA-RELNIPTIDRATLLGEI--------MKKYKYGIGVAGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++++ L  +        +Y+     P  L    VDV  G   +G S      
Sbjct: 118 HGKTTTTSLISVLLEEM--------NYD-----PTVLVGGEVDVIGGNVRVGKSDY---- 160

Query: 177 FLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           F+T             P+IAVI  +   HL  F  I+ I  +  +    + K G +    
Sbjct: 161 FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPKDGFVVACG 220

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DDS    +LK        + I +FG   N  +  +  K   E+ +        S +V ++
Sbjct: 221 DDSNTMSVLKNVD-----RNIITFGIDSNCTWNAKNIK-FDEKGF-------PSFDVYYN 267

Query: 287 G----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G          +G H   N L TL +  +L  D+ +    +  F   +G  +R+      
Sbjct: 268 GVFIQNFELSIVGKHNIYNALATLAVCHLLGVDIKSTPSIIKKF---KGTHRRFEFKGTL 324

Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387
               +ID+ Y  +P  +KA +S         ++    PH   R  ++L D       + S
Sbjct: 325 DGAIIIDD-YAHHPTEIKATLSSALNYPHNRIICIFQPHTYSRTYSLLQD------FATS 377

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443
           F  D A++  + +I         ++  KD       R    +Y +    +  +++S +  
Sbjct: 378 F--DNADITIITDIYAAREKDTGIVHAKDLAKLIRDRGNETYYIKEFTDIVDYLRSIIKS 435

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD+V+   +     Y + N+LL 
Sbjct: 436 GDLVITIGAGDV--YEVGNMLLN 456


>gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
 gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
          Length = 510

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 161/402 (40%), Gaps = 40/402 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DLL  +  + +   P   ++ +  DSR + P   F AI+G H DGH+FI  A+  GA
Sbjct: 4   TLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
             VVV+        S  +PV  V D   AL  LA A       + T I ITG+ GK+TT 
Sbjct: 64  AAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKGKSTTT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------LGMSH 171
           ++    L++  +T   I + +  IG      R P D      E            +    
Sbjct: 124 DLTAQLLAAAGRTVGMISTVDFQIGT----RRWPNDTRQSTPEAPEVQALLREMVVAGCD 179

Query: 172 LGEIRFLTHLVRPH----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKT 220
              I   +H + P           +AV+  I   HL      E+  + KA++F  L E+ 
Sbjct: 180 TAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERH 239

Query: 221 GTIF--LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           G  +  +N DD       A   +  ++  Y+      AD Q +        S M +    
Sbjct: 240 GPTWAIVNADDPHHGTFLAAVPSQTMRLRYAL--HAPADVQGQIVHSGPASSHMRIHSPW 297

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +EV     G   A N+L  L +   LT  V     A +V H +  RG+     + Q F
Sbjct: 298 GEIEVNVPLPGRFNASNVLAALTVA--LTQGVPLERAAAAVAHVRAPRGRMVSINVGQPF 355

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             ++D  Y  NP S +    + + + P   GR IAV G   E
Sbjct: 356 TVIVD--YAHNPDSFE---QIFTMLRPQVTGRIIAVFGSAGE 392


>gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 498

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 43/238 (18%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ--------KGAGLVVVNTDMVASI 78
           V G+++DSR I P   F A++G  + G  ++  A+         + AG V    D   + 
Sbjct: 22  VGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALAAGAGAVLWEPAGDVAPEPDERTAA 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               +P+  V D+   L    +AARL     ++  ++ +TG+ GKT+  + L   L    
Sbjct: 82  ERAGVPLIAVPDLGRRLGP--IAARLYGDPSARMRVVGVTGTDGKTSVTQYLAQLLDREA 139

Query: 135 KTYACIGSYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLG 173
                +G+                 +   V  TLAR+       V ++     L    + 
Sbjct: 140 HRCGLVGTLGSGFPDSLQPGTHTTPDAASVQRTLARLHRQGAAQVAMEVSSHALDQHRVA 199

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            +RF       H AV+T +   HL     +   A AK+ +F G+       LN DD+F
Sbjct: 200 GVRF-------HTAVLTNLGRDHLDYHGDLAGYAEAKSRLF-GVPGLQWAVLNLDDAF 249


>gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
 gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
          Length = 499

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA  V+   D   + G +    ++PV
Sbjct: 34  LELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQVEYREAVPV 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L+++A          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 94  MYLSELDQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153


>gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
 gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
          Length = 494

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 19/221 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR+    + F A+ G   DG  FI  AV  G   V+   D     G +    +
Sbjct: 27  VEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGLIEWLDT 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  ++++   L++LA          +I +TG+ GKTT  +++   L  + +  A +G+
Sbjct: 87  VPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188
             N    ++          +++   + EL           +S  G ++     +   + V
Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKALDFEVGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            T ++  HL     +EE A AK  +F    K     +N DD
Sbjct: 207 FTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDD 246


>gi|308272541|emb|CBX29145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 13/194 (6%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHAL 242
           P IA++T+I   H   F  +E +    + + E +   +  I  + D +   L++  S   
Sbjct: 191 PLIAILTSIEFDHADIFRDLEHVKETFSRMIEKISPGSSLIVFDRDTNIKSLIRNSSC-- 248

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLG 301
               I  +GK+ ++D++L  ++     ++ EV  +GK+        IG H   N L  + 
Sbjct: 249 ---KIEKYGKNSDSDWKLGSFRVEPPWTFFEVMKKGKAFGSFKTKLIGEHNLLNALSVIA 305

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   VDT   AL  F   EG  +R      +   T++D+ +  +P ++K  I  + 
Sbjct: 306 AADNLKVPVDTIHDALETF---EGVKRRQEIRGERKGITVMDD-FAHHPTAVKETIKAVR 361

Query: 362 QISPHGEGRRIAVL 375
              P  +GR IAV 
Sbjct: 362 PFYP--DGRVIAVF 373


>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
 gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
          Length = 487

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +     F A+ G   DGHDFI  A+  GA  V+   + + S     I   
Sbjct: 24  IQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAKAVIF--EKLPSELQKGITYV 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   A+  +A         K  ++A+TG+ GKTTT  +L      +  +   + +  
Sbjct: 82  QVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTTTVTLLHQLFMRMGYSTGLLSTVE 141

Query: 145 NHIG---VPLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPHI-------AVI 189
           N I    +P T    P  V        + E G +H         +V+  I       AV 
Sbjct: 142 NKINEEVIPAT-HTTPDSVSIQALLKQMLEAGCTHCFMEASSHAIVQERIAGLKLAGAVF 200

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIK 245
           T I+  HL      +E   AK ++F+ L K     +N DD       +  K      G+K
Sbjct: 201 TNISHDHLDYHLTFDEYIKAKKKLFDELPKAAFALVNGDDKRGMVMLQNCKGSHQTFGLK 260

Query: 246 TIYSF 250
           T   F
Sbjct: 261 TPAEF 265


>gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
 gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P+IA I  I P H+      +     K +IF+ ++K G + LN DD     +  ++  +
Sbjct: 173 KPYIASIGNITPDHIDWHGSFDNYIEDKLKIFKNMDKNGNLILNIDDEILGKINVENTNV 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              ++     +KNADF L      SE ++     +  SM+ +   +G H AQN+L++L I
Sbjct: 233 TKISL----NNKNADFYL------SENNFYHNDKKLFSMKDLKI-LGKHNAQNVLISLAI 281

Query: 303 VSILTADVDTAIKALSVFHPKEGR 326
                  +DT I A   F   E R
Sbjct: 282 CYNYGIIMDTIIFACKNFGGVEHR 305


>gi|293510628|ref|ZP_06669333.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
 gi|291466519|gb|EFF09040.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 437

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGVGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G  ++ D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Desmospora sp. 8437]
          Length = 70

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          + G+ +DSR + P + F A+KG   DGH FI  AV+KGA  VV+  +M
Sbjct: 23 ITGMEVDSRRVRPGDLFIALKGFTVDGHRFIRQAVEKGARAVVLEEEM 70


>gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
 gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
          Length = 445

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 100/262 (38%), Gaps = 29/262 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVD 161
           R    IIAITGS GKTTT  ++    +         G    +IG P+    LAR     D
Sbjct: 105 RQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAG----NIGTPVLEAWLARKGKPAD 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T L+    A    I+  HL  +  + + A AK  IF G     
Sbjct: 161 VWVLELSSFQLET----TPLLDADAAACLNISEDHLDRYDDLLDYARAKDMIFNG---KA 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKS 280
              LN DD+F   +K        +T++ F   +  D+    W+         EV L  ++
Sbjct: 214 VQVLNADDAFCRAMKRDG-----RTVHYFSLQQPQDYH---WQAGAGSLHHQEVLLMPQT 265

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +    G H   N+L  L +   +    D  +  +  F   +G   R      +   T
Sbjct: 266 DIPLQ---GSHNMANVLAALALCESIGLPRDRLLAHVKTF---KGLPHRVEKVGEKNGIT 319

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            ID+S   N  +  AAI+ L +
Sbjct: 320 FIDDSKGTNVGATVAAIAGLPE 341


>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
 gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
          Length = 454

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 31/203 (15%)

Query: 61  VQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           + +G  LVV N  +      V    +L IPV         + ++ +A+++ +KA II IT
Sbjct: 66  IHEGVSLVVKNPGIPYEAAPVKQAQALGIPV---------VTEVELASQI-AKAPIIGIT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLG 173
           GS GKTTT  ++ +    I K          +IG  L  LA      + G  E  ++ L 
Sbjct: 116 GSNGKTTTTTLVGL----IFKEAGLDAKVGGNIGTVLCGLAE-----EAGPDEWLVAELS 166

Query: 174 EIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + + T   RPHI V+  + PAHL     +EE  +AK ++F          L YD    
Sbjct: 167 SFQLMGTRKFRPHIGVLLNLYPAHLDYHHTMEEYLAAKLKMFANQTADDAAILPYDQP-- 224

Query: 233 ELLKAKSHALGIKTIYSFGKSKN 255
           E+++ K   L   +IY F KS+ 
Sbjct: 225 EIVE-KCKDLP-ASIYYFSKSQE 245


>gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 529

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           + G+++ S    PQ  F AI G    G  F   A  K AG V V TD   +  ++S    
Sbjct: 48  IAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAA--KEAGAVAVLTDAAGASRAVSEGLG 105

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  VDD    +  LA A        ++  A+TG+ GKTTT  ++  AL+++    A  
Sbjct: 106 LPVVVVDDPRSHVAALAAAVYGHPARDLVTLAVTGTNGKTTTSYLMRAALAAVHPRAALC 165

Query: 141 GSYNNHIG 148
           G+    +G
Sbjct: 166 GTVETRVG 173


>gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 11379]
 gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
 gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
          Length = 491

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 157/423 (37%), Gaps = 51/423 (12%)

Query: 9   DLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL+     H++   P       G++ D+  + P   F A+ G    G   +  AV +GA 
Sbjct: 5   DLMAGQDHHALRGTPDRTDITAGVTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAV 64

Query: 67  LVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
            V+V+        +L  +    V DV  A   +A            +IAITG+ GKT+  
Sbjct: 65  AVLVDEQAPPLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGKTSVS 124

Query: 124 EMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF------------GIF 165
            M    L   ++     IG+  + IG     +P ++   P   D             G  
Sbjct: 125 YMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRACGSV 184

Query: 166 ELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            L  + +G    LTH +      + V T +   HL +   +E    AK  +F+GL +   
Sbjct: 185 VLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRRAV 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD     L A    L    + ++    +AD++       +  S   +   G+   
Sbjct: 242 V--NADDP----LGAGIRKLMAGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKYP 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G     N L T+    +L   +   + AL       GR +R +  +  G   ++
Sbjct: 296 AAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQ--IPGGTSVIV 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMGELSQSFHIDLAE 394
           D  Y  +P S+     VL+ I     GR I V G           EMG ++ + H DL  
Sbjct: 354 D--YAHSPDSLN---KVLTTIRGFARGRVITVFGCGGDRDTTKRAEMGAIAGT-HSDLCV 407

Query: 395 VLS 397
           + S
Sbjct: 408 LTS 410


>gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 14/141 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  ++++  AAR  +++  I ITGS GKTTT  ++   L++     A  G+      V  
Sbjct: 92  LPVISEIEFAARY-TRSFTIGITGSNGKTTTTNLVYHLLATAGMDVAMGGN------VGK 144

Query: 152 TLARMPVDVD--FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIAS 208
           + AR+  + D  F + EL    L  IR      RP IA+I  I P HL  +   +E+ A+
Sbjct: 145 SFARIVAERDYPFYVLELSSFQLEGIREY----RPDIAMILNITPDHLDRYDYQLEKYAA 200

Query: 209 AKAEIFEGLEKTGTIFLNYDD 229
           AK  I +  +   T   N DD
Sbjct: 201 AKFNIVKAQQAEDTFLYNADD 221


>gi|193213699|ref|YP_001999652.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
 gi|226711893|sp|B3QLW6|MURD_CHLP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193087176|gb|ACF12452.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
          Length = 467

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGI 164
           +A II ITG+ GKTTT  ++     +  +          +IG P +  ++ M  D D  +
Sbjct: 107 RARIIGITGTDGKTTTATLIHRICEADGEQQGYRAFSVGNIGTPFSSEVSGMEPD-DIAV 165

Query: 165 FELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            EL    L G   F     RP+IAV+T I P H+  + G I   A AK  I    +   T
Sbjct: 166 LELSSYQLEGCSSF-----RPNIAVLTNITPDHMDRYGGDIHAYARAKFRIHASQQAGDT 220

Query: 223 IFLNYDDSFFELLKA 237
           +  N+DD    LL+A
Sbjct: 221 LIYNHDDP---LLRA 232


>gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894]
          Length = 488

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGNSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVENYRQTGAQGHFTLVR 276

Query: 277 QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  + V  +  G H A N    + + +    + D  ++AL  F   +G G+R+
Sbjct: 277 QDKPELHVTLNAPGRHNALNAAAAVSVATEEGIEDDAILRALESF---QGTGRRF 328


>gi|134095970|ref|YP_001101045.1| UDP-N-acetylmuramate--L-alanine ligase [Herminiimonas
           arsenicoxydans]
 gi|166224695|sp|A4G8T7|MURC_HERAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133739873|emb|CAL62924.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Herminiimonas arsenicoxydans]
          Length = 469

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 149/382 (39%), Gaps = 50/382 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT  ++   L+   +  T+  IG   N  G    L  
Sbjct: 98  LAELMRLRRG---IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGLLNSAGANAKLGA 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL   + P I VIT I   H+  +    E++  A  E  
Sbjct: 154 -------GEFIVAEADESDASFLN--LSPVIEVITNIDADHMETYEHDFEKLKQAFVEFT 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + L   G   L  DD+    +  +      K I ++G  ++A  +    K         V
Sbjct: 205 QRLPFYGVAVLCLDDATVREIMPRIS----KLITTYGFHEDAMVRAVDAKAVDGHMQFTV 260

Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-- 331
              G + M+V  +  G H  QN    + I   L        KAL+ F    G G+R+   
Sbjct: 261 IQDGYAPMQVSLNQPGMHNVQNACAAIAIARELGVSDHATQKALTEF---TGVGRRFTRY 317

Query: 332 -----CALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                 A+N    G F L+D+ Y  +P    A IS      P   GRR+ VL        
Sbjct: 318 GEISFSAVNDKPAGSFALVDD-YGHHPVETAATISAARGAYP---GRRL-VLAFQPHRYT 372

Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL----- 435
            ++    D  +VLS  +   ++ V+ +G   +   D    +  +  +  +D +F+     
Sbjct: 373 RTRDLFEDFVKVLSTTDMLLLAEVYAAGEQPIVAADGRTLAHALRVAGKVDPVFVEHIVD 432

Query: 436 ---FIQSSLVDGDVVVVKSSNS 454
               I + + DGDVV+   + S
Sbjct: 433 MPATIMNIVRDGDVVITMGAGS 454


>gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
 gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
          Length = 494

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 147/381 (38%), Gaps = 40/381 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+ P   + GI++DSR +     F A+ G    G  F   A+  GA  ++ +      + 
Sbjct: 19  GVDP--MIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVA 76

Query: 80  SL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123
            L    ++ +  V+D   AL   A         T++A+TG+ GKT+              
Sbjct: 77  QLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWVELGH 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----GMSHLGEIRFLT 179
           + + +  + ++ +++     N+    P+TL                    SH  E R L 
Sbjct: 137 QAVNLGTTGVEGSWSH--PLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLEQRRLD 194

Query: 180 HLVRPHIAV--ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLK 236
            +   H+A    T     HL      E   +AKA +F   L   G   +N DD   E ++
Sbjct: 195 GV---HLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMR 251

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A + A G + I S G+    D  L   +  +    M      K  +   + IG   A+N+
Sbjct: 252 AVAAARGHEVI-SVGRGLG-DLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENI 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKA 355
           L+  G+V     D       L   H +  RG+    A  + G    +D  Y   P ++  
Sbjct: 310 LLACGLVIASGEDPQAVFDTLP--HLQTVRGRMQLAATRENGATVFVD--YAHTPDAVAT 365

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           AI  L    PH  GR +A++G
Sbjct: 366 AIKAL---RPHVLGRLVAIVG 383


>gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
 gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
          Length = 503

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 45/389 (11%)

Query: 18  SIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-------- 65
           ++G+  QG     + G+S+DSR +     FFA+ G    G DFI +A++ GA        
Sbjct: 14  ALGLRGQGGREATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTDAQ 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122
           G  +   ++  S  +L I     +D  GA   LA+ A L   A   T+IA+TG+ GKT+ 
Sbjct: 74  GAQIAANELAESTAALII----AEDPRGA---LALTASLWFGAHPETMIAVTGTNGKTSV 126

Query: 123 KEM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDFG----IFELG 168
                   + + L+++   T    G++ + +      P+TL R            +    
Sbjct: 127 STFARQIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEA 186

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
            SH  + R L  +V    A  T  +  HL      E    AK  +F   L + G   +N 
Sbjct: 187 SSHGLDQRRLDGVVL-SAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINI 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   +   G++TI + G+  +A  +L   +  S    +    Q  S       
Sbjct: 246 DDPKGPEVVQIAQNRGLETI-TVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKL 304

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L+   +V     D +     L       GR  ++      G    +D ++ 
Sbjct: 305 IGGFQADNVLLATALVIAAGGDPEEVFDTLPYLTTVRGR-MQHAATRRNGGSVFVDYAHT 363

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +     A  + L  + PH  G+ IA++G
Sbjct: 364 PD-----AVATALMAMRPHVMGKLIAIVG 387


>gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
 gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 125/324 (38%), Gaps = 78/324 (24%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            +D V+   + ++PV G  D+L              K  IIA+TG+ GKTT   ++   L
Sbjct: 76  KSDAVSMARAKNVPVQGELDLLAPF----------LKGKIIAVTGTNGKTTCTALIAHLL 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +        G+    IG PL  A      D  + EL    L    + T L RP +AV+T
Sbjct: 126 RNAGLNAVSAGN----IGNPLA-AHADRSYDAIVMELSSFQL---HWNTQL-RPDVAVLT 176

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELLKAKSHALGIKTIYS 249
            +AP HL      E   + K +IF  L +    + + +D   F +   ++       + +
Sbjct: 177 NLAPDHLDWHGSYENYKNDKCKIF--LPRQEECYAVTHDVDAFRVPAGRA-------VCA 227

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-------------IGYHMAQNM 296
            G+                   + + + G+ + +V HG             +G H  +N 
Sbjct: 228 LGRGN-----------------LRIDMDGRDVFLVGHGRRRLLFHKSSLKLLGSHNLENA 270

Query: 297 LMTLGIVSILTADVD--TAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352
            M+   V++   DVD    +      H        +RC     Q     ID+S   N A+
Sbjct: 271 AMSCAAVALAFRDVDPSAGLAGFEALH--------HRCEPVGEQNGVLFIDDSKGTNVAA 322

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           + AA+  ++       GR++ +LG
Sbjct: 323 VIAALHSIN-------GRKLIILG 339


>gi|311104002|ref|YP_003976855.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
 gi|310758691|gb|ADP14140.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
          Length = 468

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 55/374 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L +     D+ + E  
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTF-VIGGRLNSAGANARLGQG----DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P +A++T I   H+  +   +  + SA  E  + L   G+  L  
Sbjct: 163 ES---DASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCS 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------K 279
           DD+   E++   S     + I ++G ++ A  Q+R ++     + M   +Q         
Sbjct: 218 DDANVREIMPFVS-----RPITTYGLNEEA--QVRAYEVQPAGTRMRFNVQRTHRDTLLP 270

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---- 335
            ++V  +  G H  +N L  + + + L    +   +ALS FH   G G+R+    +    
Sbjct: 271 PLQVELNLPGLHNVRNALAAIAVATELGVADEAICEALSSFH---GVGRRFTQTGDFPVP 327

Query: 336 ----QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G FT+ID+ Y  +P  M A ++      P    RRI +             F  D
Sbjct: 328 ANHGGGTFTVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-D 382

Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSS 440
              VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L   +   
Sbjct: 383 FVRVLGTADAVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDF 442

Query: 441 LVDGDVVVVKSSNS 454
           + DGDVV+V  + S
Sbjct: 443 VRDGDVVIVMGAGS 456


>gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2]
 gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
          Length = 514

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR + P   F A++G   DGHD++  A+++GA  VVV   +      +     
Sbjct: 30  ITSIHNDSRDVKPGGLFIAVRGFKIDGHDYVEDALERGAAAVVVQQRVPGKQRMVE---- 85

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D   A+   ++AAR     +    ++ ITG+ GKTTT  +L    +        IG+
Sbjct: 86  -VADTRKAM--ASIAARFYDNPSESMCLVGITGTNGKTTTSFILESIFAQAGHCVGVIGT 142

Query: 143 YN 144
            N
Sbjct: 143 VN 144


>gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
 gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 137/321 (42%), Gaps = 53/321 (16%)

Query: 170 SHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217
           + LG  RFL            HL +P ++++T I   H+  + G  E +     +    L
Sbjct: 166 ARLGSSRFLIAEADESDASFLHL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNL 224

Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              G   +  DD    ELL   S     + + ++G S +AD +L  ++Q  +QS+  VQ 
Sbjct: 225 PFYGQAVMCVDDPVVRELLPQVS-----RQVITYGFSDDADVRLINYRQVGQQSFFTVQR 279

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331
           + ++ +++V +  G H A N    + + +    + +  + AL  F   EG G+R+     
Sbjct: 280 KDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNF---EGAGRRFDQLGE 336

Query: 332 CALNQGFFTLIDESYNANPA----SMKAAISVLSQ------ISPHGEGRRIAVLGDMCEM 381
                G   L+D+ Y  +P     ++KAA +  ++        PH   R   +  D   +
Sbjct: 337 FETGNGSAMLVDD-YGHHPTEVDVTIKAARAGWAEKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFL 435
            +     ++D+  +L +Y+     ++G    A   AL R+I         +  T++ L  
Sbjct: 396 LD-----NVDVLIMLDVYSAGETPIAG----ADGRALCRTIRGRGKIDPVFVPTIEALPP 446

Query: 436 FIQSSLVDGDVVVVKSSNSCG 456
            + + + +GD+++ + +   G
Sbjct: 447 VLANIIQEGDLILTQGAGDVG 467


>gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
 gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++       +G    +IGVP  L  +  +V+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               +     HA  ++ + +FG  + A F + +  Q  E  +        S E+    +G
Sbjct: 218 ----VQTFPDHAAHLQVV-TFGVEQPAQFSVAE-HQGREYLFARDNAVLASSELSL--VG 269

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +V  A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA V +   +    L
Sbjct: 324 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVFATLPLQ---L 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V   K  +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIIRSIRPELKSGDMVLL--SPACASF 419


>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
 gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
          Length = 445

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R     D  + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  K +IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ  E   +  ++ LQG
Sbjct: 252 ETGRLKQGDEDLIATQDIPLQG 273


>gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
 gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
          Length = 520

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 16/227 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   F AI+G  +DGH +I  AV+ GA  V+    +    GS ++ +   D
Sbjct: 41  LAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAAVICEA-LPEDNGSGAVYIRVAD 99

Query: 90  DVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
                        R  S+   +I +TG+ GKTTT  ++   L+S       IG+    I 
Sbjct: 100 SRRALAAAARAFYRNASERIFLIGVTGTNGKTTTARLIADMLNSCGIPAGYIGTNLCRIA 159

Query: 148 GVPLTLARMPVD-----------VDFGIFELGMSHLGEIRFLTHL--VRPHIAVITTIAP 194
           G  ++L R   +           +D G     M        L  +  +R   AV T ++ 
Sbjct: 160 GRDISLDRTTPEAHELQALFRRMLDAGCQAAVMEVSSHALVLDRVSGLRFRCAVFTNLSM 219

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            HL     +   A AK  +F+ L+  G    N DD +   + ++  A
Sbjct: 220 EHLDFHQTMAGYADAKQILFDQLDPEGFAVFNIDDPYASQMASRVAA 266


>gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
 gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
          Length = 473

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 149/367 (40%), Gaps = 42/367 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ++   L++  +    +      IG  LT A     +    + +  +
Sbjct: 119 IAVAGTHGKTTTTSLMASILAATGEAPTFV------IGGRLTSAGANAQLGSSAYLVAEA 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P   ++T I   H+  + G  E++     E    L   G   L  DD
Sbjct: 173 DESDASFL-HL-QPQTVIVTNIDEDHMDTYDGDFEKVKHTFIEFVHNLPFYGLAVLCVDD 230

Query: 230 -SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287
            +  E+L   S     + + ++G  + ADF   +  Q      ++  + +G+ +++    
Sbjct: 231 ENVREILPTLS-----RPVLTYGIDQEADFYATEIVQTGRYCEFLAHRPEGEPLKIRLPM 285

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343
            G H   N L T+ + + L  D       L  F   EG G+R++     AL  G   +  
Sbjct: 286 PGRHNVLNALATIAVATDLGVDASAIQAGLMGF---EGVGRRFQEQKPLALPNGSNVMFV 342

Query: 344 ESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P+ + A I  +              PH   R   +  D   +  LSQ   +D+ 
Sbjct: 343 DDYGHHPSEVLATIKAIRAGWPEKRLVMVYQPHRYTRTRDLYEDFVRV--LSQ---VDVL 397

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVK 450
            +L +Y+     ++G    +L  ++ +  +V   H     D L   + + L +GD+++ +
Sbjct: 398 LLLDVYSAGEAPINGADSRSLCGSIRQRGNVDPIHVGSEAD-LRSILSNVLREGDLLITQ 456

Query: 451 SSNSCGF 457
            +   G 
Sbjct: 457 GAGDIGM 463


>gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
 gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
          Length = 486

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 147/384 (38%), Gaps = 65/384 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           V G++ DSR + P   F A+ G   PH    DGH FI  A+++GA  VV   D+     +
Sbjct: 19  VRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIPEALRRGAIAVVGEQDL-----T 73

Query: 81  LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML-----------T 127
           L +P   V D   AL  LA            +  +TGS GK+TT  +L           T
Sbjct: 74  LPVPYARVADSRQALALLARRFYGEPDRALRLFGVTGSKGKSTTAFLLHHLLEEAALLST 133

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---SH---LGEIRFLTHL 181
           + L    +    IG +      P   A +    D G+ E  +   SH   L  +  LT  
Sbjct: 134 VGLRLGGEARPPIGHFTT-PEAPEVYAFLREAADRGLREAVLEVSSHALALKRVEGLTF- 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIA-SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
               + V     P    +F G  E   +AK  +   +E++    LN   +  E L+ + H
Sbjct: 192 ---RVGVFVNFYPDDHLDFHGTPEAYFNAKTLL---VERSDLAVLNTSLTHLERLRQRPH 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNM 296
            L       FG           W +   E+  +   L    GK  EV    IG H  +N 
Sbjct: 246 LL-------FGPGGEV------WAEGVREEEGLRFTLHTPWGKG-EVHLPLIGAHNVENA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L            ++  ++ LS F    G   R      + F  +ID ++     S++AA
Sbjct: 292 LAASAAALAAGVPLEKVLERLSGF---PGVPGRMEVVQEKPFRVVIDFAHTGK--SLEAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCE 380
           +  L    P  +GR + V+G   E
Sbjct: 347 LRTL---RPTTQGRLLLVVGAAGE 367


>gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 465

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY      + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFH--VLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G    V A  DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIVTANGDALSRALRAAGKVEPVFVATVDEVPGALAQVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 35/281 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           ++    +I I+G+ GKTTT  M+   L           +YN     P  L    V    G
Sbjct: 98  MKDFKNVITISGTHGKTTTTSMIGYILKK--------ANYN-----PTVLVGAFVKQLGG 144

Query: 164 IFELGMSHLGEIRFLTHL-----VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F +G      +    ++       P I VI  I   HL  F  I+ I ++  +  + + 
Sbjct: 145 NFVIGSKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIP 204

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +G + +NYDD   + +K   + L  + I    K K   F       CS+  + E  ++ 
Sbjct: 205 TSGFLVVNYDD---KNVKDIINQLNTQIICISTKEKTDIFA--DNISCSD-GYYEFDVKN 258

Query: 279 KSMEVVHH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            + E++ H    I G+H   N L    + S L  +  T  +ALS F    G  +R     
Sbjct: 259 NNDEILAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEQALSEFR---GASRRLEKVG 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
                 L D+ Y  +P  +KA ++ L +IS   EG+ +A+ 
Sbjct: 316 EFNGIYLYDD-YAHHPTEIKATLATLKKIS---EGKVLAIF 352


>gi|71902948|ref|YP_279751.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS6180]
 gi|109892746|sp|Q48V60|MURC_STRPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71802043|gb|AAX71396.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS6180]
          Length = 442

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 132/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  +  DF      + +  S  +V+ QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +DTA+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDTALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|320537962|ref|ZP_08037869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
 gi|320145215|gb|EFW36924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
          Length = 480

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/277 (18%), Positives = 114/277 (41%), Gaps = 33/277 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-- 163
           + A I+A+TGS GK++T   L   L  +         + + +G  +T++ +    + G  
Sbjct: 111 TDAPILAVTGSKGKSSTVSALQYGLQGM--------GFRSFLGGNITISPLDFLSETGKD 162

Query: 164 ---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L ++R    L++P +AVIT + P H + +  +E   + K  ++      
Sbjct: 163 TPVVLELSSWQLADLRG-KKLLKPEVAVITPVMPDHQNWYGSMEAYVADKKLLYADQTPE 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              F NYDD + ++  +++    +  ++ +      +     W   S +++  +  Q + 
Sbjct: 222 EFCFCNYDDQWGKIFASET----VAQVFWYSIKPLPENLCGAWLDKSGEAFFRLHAQAEP 277

Query: 281 MEVVHHGI---GYHMAQNMLMTLGIVSILT------------ADVDTAIKALSVFHPKEG 325
           + ++ + I   G  + +N++     + +              +D++ A K  +V     G
Sbjct: 278 LRLLPNEIMVPGSILKENVMNAAAAIFLFVRKQRGSFADTALSDLELAAKLSAVMKTYPG 337

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              R      QG     +++    P +  AA+   ++
Sbjct: 338 LEHRLEFFYEQGGVRFYNDTTATVPEATAAALDAFTE 374


>gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 477

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 37/342 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+    +IPV    D+LG          L + +T + I G+ GKT+T  M  +A+
Sbjct: 84  NPELVAA-REQNIPVIRRSDLLG---------ELMTGSTQVLIAGTHGKTSTTSMAVVAM 133

Query: 131 SS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            +  +  ++A IG   N  G   T A       F + E   S    +R+      P IAV
Sbjct: 134 QAAGMDPSFA-IGGQLNKAG---TNAHQGSGHCF-VAEADESDASLLRY-----SPDIAV 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGI 244
           +T I P HL  F   E       +    L  TG + +  DD    +  E  K K    G 
Sbjct: 184 VTNIEPDHLDFFHTPEAYFQVFDDFASRLTDTGVLVVCLDDEHAAALGERQKTKVTVRGY 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +  +  +  + + +    ++Q S   +++  + +EV     G HM  N    L   
Sbjct: 244 GSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAG 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID--ESYNANPASMKAAISV 359
            +   DV    + +S F    G  +R+    A+  G +  ++  + Y  +P  ++A ++ 
Sbjct: 304 VLAGGDVAALAQGISEF---SGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTA 360

Query: 360 LSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + ++  G G+ I V      M   +Q F  + AE LSL +
Sbjct: 361 AREKLAARGSGQVIVVF--QPHMYSRTQEFAAEFAEALSLAD 400


>gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
 gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
          Length = 468

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M  +AL  + ++ ++A IG++   +G            D G + +
Sbjct: 114 VIAVAGTHGKTTTSSMTAVALRAAGLRPSWA-IGAHVADLGANAGF-------DAGEWFV 165

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             +   +  F+ +   P +AV+T + P HL ++   E    A  E  + + + GT+    
Sbjct: 166 AEADESDGSFMAY--HPEVAVVTNVEPDHLDHYGSAEAFHRAFDEFSDTIREGGTLVACA 223

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           DD     L  +    G   + S+G    AD  L
Sbjct: 224 DDPGAARLAERRRTRG-GAVLSYGTDPGADVVL 255


>gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 454

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 112 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 165

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 166 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 223

Query: 223 IFLNY 227
           +  NY
Sbjct: 224 LICNY 228


>gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU045]
          Length = 449

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 161 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218

Query: 223 IFLNY 227
           +  NY
Sbjct: 219 LICNY 223


>gi|237654083|ref|YP_002890397.1| UDP-N-acetylmuramate--L-alanine ligase [Thauera sp. MZ1T]
 gi|237625330|gb|ACR02020.1| UDP-N-acetylmuramate/alanine ligase [Thauera sp. MZ1T]
          Length = 471

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 153/371 (41%), Gaps = 45/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   I  T+  IG   N  G    L         G + + 
Sbjct: 108 IAIAGTHGKTTTTSLVASILAEGGIDPTF-VIGGRLNAAGANARLG-------TGDYLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L+ P I+V+T I   H+  +      +  A  +    L   G   L  
Sbjct: 160 EADESDASFL--LLNPVISVVTNIDADHMDTYGHDFGRVKQAFVDFLHRLPFYGVAVLCE 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKS--MEV 283
           DD +  E++   +     K I  +G S+ A+ +    + +     +  V++ G +  + +
Sbjct: 218 DDPNVREIIPQVA-----KQIVRYGFSETANIRAENVRAEGGRMRFDCVRVNGTTSRLSI 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQ------ 336
             +  G H   N L  + + + +       +KAL+ F+    R +RY   AL+       
Sbjct: 273 ELNLPGLHNVLNALAAIAVATEVQVPDAAIVKALAEFNGVGRRFQRYGEVALHDQDGDEA 332

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTL+D+ Y  +P  M A I+      P   GRR+ +             F  D  +VL
Sbjct: 333 GRFTLVDD-YGHHPVEMAATIAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVL 387

Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           S  +   ++ V+ +G   +   D  +L R+I V       + E +  +   I S+  DGD
Sbjct: 388 STVDALLLAEVYAAGETPIVAADGRSLARAIRVAGTVEPVFVEEIADMPRMILSAARDGD 447

Query: 446 VVVVKSSNSCG 456
           VV+   + S G
Sbjct: 448 VVITMGAGSIG 458


>gi|15615130|ref|NP_243433.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           halodurans C-125]
 gi|30316130|sp|Q9K9S8|MURD_BACHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|10175187|dbj|BAB06286.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus halodurans
           C-125]
          Length = 450

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 21/146 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A I+AITGS GKTTT  ++   L    +     G    +IGV  + +AR     D  +
Sbjct: 109 SEAEIVAITGSNGKTTTTSLVVEMLKGSAREPKVAG----NIGVVASDVAREATADDVIV 164

Query: 165 FE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            E      +G SH           RP +A++  I  AHL      E   +AK +I E ++
Sbjct: 165 MEVSSFQLMGTSHF----------RPKVAILLNIFDAHLDYHGSKENYVAAKKKIVENMK 214

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGI 244
           +      N DD     + A++ A  I
Sbjct: 215 EEDYFVYNADDPLVSKVAAETKATPI 240


>gi|320546319|ref|ZP_08040638.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
 gi|320449040|gb|EFW89764.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
          Length = 451

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A + S A II ITGS GKTTT  M+   L++  ++    G  + +IG P + +A+   D 
Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGQS----GLLSGNIGFPASEVAQTATDK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T    PHIAVIT + P H+      E    AK  I + +   
Sbjct: 162 DTLVMELSSFQL----MGTDTFHPHIAVITNLMPTHIDYHGTFENYVVAKWNIQKNMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             I LN++    + L  K+ A
Sbjct: 218 DFIVLNFNQDLAKELAEKTAA 238


>gi|19745509|ref|NP_606645.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS8232]
 gi|25008810|sp|Q8P2E1|MURC_STRP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19747627|gb|AAL97144.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes MGAS8232]
          Length = 442

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  +  DF      + +  S  +V+ QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +D A+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIVNDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|332298510|ref|YP_004440432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           brennaborense DSM 12168]
 gi|332181613|gb|AEE17301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           brennaborense DSM 12168]
          Length = 511

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLARMPVDV 160
           ++A IIA+TGS GK++T   +   L        C   +   +G      PLT        
Sbjct: 133 TQAPIIAVTGSKGKSSTVSAIHYGL--------CAAGFEAFLGGNITVSPLTFLDKTDGT 184

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L ++R    L++PH+AV+T I P H + +  +E+  + K  I+   + +
Sbjct: 185 TPVVLELSSWQLADLRG-RRLLKPHVAVLTKIVPDHQNWYGSMEKYVADKKLIYADQDAS 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                  DD + +   A+++     T+  +G  K    +   W
Sbjct: 244 CWTVCAADDEWGDAFAAETNG----TVLRYGGGKLPAAECGAW 282


>gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 549

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY----NNHIGVPL--TLARMPV 158
           R +  ++ +TGS GKTTT  +L   L         +         +IG PL   + R+P 
Sbjct: 176 RCRGKVLGVTGSAGKTTTTTLLAEGLRQAAAPGGPLAGRPVFVGGNIGRPLIEEVDRIPP 235

Query: 159 D----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +    ++   F+L + H            P +AV   + P HL     +E  A+AKA I 
Sbjct: 236 EALVVLELSSFQLELCHRA----------PDVAVYLNLRPNHLDIHGTMEAYAAAKARIV 285

Query: 215 EGLEKTGTIFLNYDDS 230
           E  E  G   LN D+ 
Sbjct: 286 ELQEPDGWAVLNADEP 301


>gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
 gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
          Length = 508

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR I P + F A  G   DG+ FI  A+  GA  V+ +           IP  
Sbjct: 23  IKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDPRNFVWKSEWRIPAL 82

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            VDD+      +A  V      K  ++ ITG+ GKT+       A+ ++    A +G+  
Sbjct: 83  AVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTAVLGTLG 142

Query: 144 ----NNHIGVPLTLARMPV-------DVDFG----IFELGMSHLGEIRFLTHLVRPHIAV 188
                N  G   T     V        VD G    + E+    L + R +       +A+
Sbjct: 143 SGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF--SVAL 200

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF 214
           +T ++  HL     ++  A+AK+ +F
Sbjct: 201 LTNLSRDHLDYHQDMDAYAAAKSSLF 226


>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
 gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 152/362 (41%), Gaps = 62/362 (17%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  + LT  ++        +G    +IG    L  +  D +  + E
Sbjct: 107 NAPVIAITGSNGKSTVTD-LTGEMAKAAGVKTAVGG---NIGFA-ALDLLEQDAELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N
Sbjct: 162 LSSFQLET----TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAE---VCIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++    KT+ SFG  +  D+       C E+  +E  L   +M ++  
Sbjct: 215 RDDK-------QTYPDVEKTLKSFGFDQ-GDY------GCIEKDGIEY-LAKDAMSLLAA 259

Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339
                +G H   N L+ + ++  +  ++D  +  L  ++     G  +RC   A N G  
Sbjct: 260 NELGLVGKHNIANSLVAIALLDAVGINLDATLDTLRTYN-----GLTHRCQVVADNNG-I 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396
             +++S   N AS  AA+S L       EG+    +  +G   +  ELS + H DL   L
Sbjct: 314 RWVNDSKATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFSELSPALH-DLN--L 365

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +Y        G   ++L    PRS+     ETMD     +  +L  GD+V++  S +C 
Sbjct: 366 MMYCFGE---DGDQFVSLD---PRSL---LCETMDEAVATLYPTLNKGDMVML--SPACA 414

Query: 457 FY 458
            +
Sbjct: 415 SF 416


>gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
 gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
          Length = 458

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 158/391 (40%), Gaps = 42/391 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N +++ ++    IP+    ++LG L        +++    IA++G+ GKTTT  M++  L
Sbjct: 83  NPELIEAVAR-KIPMLTRAELLGQL--------MKNYKNPIAVSGTHGKTTTTSMISHIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                     G+ +  I V   L  +  ++  G  E  ++   E         P I+VI 
Sbjct: 134 LE--------GNLDPTISVGGILQAIGGNIRVGNSETFITEACEYTNSFLDFYPRISVIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  F  +E+I  +  +    L   GT+ +N +   +E + +  +      I ++
Sbjct: 186 NIEEDHLDFFKDLEDIRHSFHQFASLLPPDGTLVINSNIQNYEEICSGLNC----GIITY 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGIGYHMAQNMLMTLGIVSILT 307
           G S  +D+  +      ++  +   L  K +   H      G H   N L ++ +  +L 
Sbjct: 242 GSSPKSDYSAQNISY-DDKGCVSFDLLRKGIPAEHVVLSVTGDHNVSNALASIAVAELLD 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAISVLSQ- 362
              D   K L  F   + R + Y+  LN    T I + Y  +P    A++KAA     Q 
Sbjct: 301 IPSDMIQKGLISFSGTDRRFE-YKGTLNG---TTIVDDYAHHPTEIAATLKAAQHYPHQG 356

Query: 363 ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                 PH   R  A   +  E   LS + H+ LA++ +      + +S   +   ++ L
Sbjct: 357 LWCVFQPHTYTRTKAFFHEFAEA--LSHADHVVLADIYAARETDTLGISSSDL--AQELL 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 HY    + +  F++ +   GD+++ 
Sbjct: 413 NLGTDSHYFPCFEEIENFLKKNCKPGDLLIT 443


>gi|296166019|ref|ZP_06848471.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295898640|gb|EFG78194.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 486

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 117/290 (40%), Gaps = 30/290 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSY-----NNHIGV 149
           + AV ARL    T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 104 RPAVLARLMEGRTTLMVTGTHGKTTTTSMLIVALQHCGRDPSFAVGGELGEAGTNAHHGS 163

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                    + D  + E                 P++AV+T I   HL  +   +     
Sbjct: 164 GDCFVAEADESDGSLLEY---------------TPNVAVVTNIETDHLDFYGSADAYVGV 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E L   G + +  DD     L  ++  LGI+ + Y  G   +    L  W+Q   
Sbjct: 209 FDAFVERLAPGGALVVCVDDPGAAALAERTAELGIRVLRYGSGPGGDHAATLLSWEQQGT 268

Query: 269 QSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++   +QL G+S   V      G HMA N L  L     + A VD  +  L+ F   EG 
Sbjct: 269 EAVAHIQLAGESHPRVMRLSVPGRHMALNALGALLAAVEIGASVDAVLDGLAGF---EGV 325

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAI-SVLSQISPHGEGRRIAVL 375
            +R+    N G   + D+ Y  +P  + A + +V + +   G GR + V 
Sbjct: 326 RRRFELVGNAGSVRVFDD-YAHHPTEISATLAAVRTVLEQSGGGRSLVVF 374


>gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
 gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
          Length = 520

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 150/394 (38%), Gaps = 75/394 (19%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+RS+A  +AFFA      D   FI  A+++GA  V+V  +     G L   V      +
Sbjct: 34  DTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGF--TGKLDASVT---HAV 88

Query: 93  GALNKLA---VAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145
            ALN+LA    +A  R  +     + ITG+ GKT+  + +  ALS+     A +G+    
Sbjct: 89  PALNELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGTLGTG 148

Query: 146 ------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRPHIAV 188
                 H G      P     +    D G   + M       H G +          IAV
Sbjct: 149 FVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF----DIAV 204

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KAKSHAL 242
            T +   HL      E   +AKA +F   E    + +N DD+    L       A++ A 
Sbjct: 205 FTNLTQDHLDYHGTFEAYETAKARLFAWPELRAAV-INRDDAAGRRLLASTRGHARTIAY 263

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN------- 295
           GI+  +    +K A  Q   W            L   ++     G  +H++ +       
Sbjct: 264 GIEGEHGDADAKGA-HQADAW------------LAASNVRATATGTAFHLSTSDWGNADV 310

Query: 296 MLMTLGIVSI----------LTADV--DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLI 342
            + TLG+ ++          L ADV    A+  L+   P  GR +R    L N     +I
Sbjct: 311 EVQTLGLFNVSNLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVI 370

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D  Y   P +++  +  L  I+    G  + + G
Sbjct: 371 D--YAHTPDALEKTLEALRPIATARGGELVCMFG 402


>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
 gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 149/362 (41%), Gaps = 65/362 (17%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++     A +G    +IGVP  L  +  DV+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF   E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
           +  +    ++  L + T   FG    A F +              Q QG+     H    
Sbjct: 218 T--QTFPDRAAHLQVVT---FGVEHAAQFSV-------------AQHQGREYLFAHDEAV 259

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQ 336
                   +G H   N+L  L ++     +   A+ AL     K   G  +RC +   N 
Sbjct: 260 MACDELSLVGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVVDNH 314

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G    +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 315 G-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   +    L  F V   K  +P      + ++M+ +   I+  L  GD+V++  S +C 
Sbjct: 364 ATLPVQ---LCCFGVDGDK-FMPLHSSARFYDSMESIIRSIRPQLKSGDMVLL--SPACA 417

Query: 457 FY 458
            +
Sbjct: 418 SF 419


>gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
 gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++       +G    +IGVP  L  +  +V+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               +     HA  ++ + +FG  + A F + +  Q  E  +        S E+    +G
Sbjct: 218 ----VQTFPDHAAHLQVV-TFGVEQPAQFSVAE-HQGHEYLFARDNAVLASSELSL--VG 269

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +V  A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA V +   +    L
Sbjct: 324 ATNVASTLAALSGLKV-----EGQLYLLVGGVGKGADFTP-----LAPVFATLPLQ---L 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V   K  +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIVRSIRPELKSGDMVLL--SPACASF 419


>gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 454

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 112 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 165

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 166 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 223

Query: 223 IFLNY 227
           +  NY
Sbjct: 224 LICNY 228


>gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 494

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 116/313 (37%), Gaps = 63/313 (20%)

Query: 30  ISIDSRSIAPQEAFFAIKG------PHYDGHDFI---------------------LHAVQ 62
           I  DSR +   + F A+ G         DG DFI                     L    
Sbjct: 20  IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVCLPARVEAALADAP 79

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA +V  + D   +IG L    +G D +                  ++A+TG+ GKTT 
Sbjct: 80  EGA-VVAAHDDPRVAIGLLGQARYGTDAL---------------PFPVVAVTGTNGKTTI 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLT----------LARM-PVDVDFGIFE 166
             +L    S++ +    +G+ +       +  PLT          L RM    VD  + E
Sbjct: 124 TYLLDHVFSALGRRAGVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALME 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225
           +    L + R     +R   A++T +   HL     +E   +AKA +F  L +      +
Sbjct: 184 VSSHALDQRRVAG--IRFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAV 241

Query: 226 NYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD++   LL    HA+G         S          +  +    + +  +G+  E+ 
Sbjct: 242 NADDAWGRRLLGEVPHAIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELS 301

Query: 285 HHGIGYHMAQNML 297
            H +G H A N+L
Sbjct: 302 SHLVGAHNASNLL 314


>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GKTTT    T  +S I K          +IG PL      +  D    ++ +
Sbjct: 114 IIAVTGSDGKTTT----TTLISEILKREGRRVHLGGNIGRPLLPEIETIRED----DVAV 165

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + ++    P +AVIT I P HL     + E   AK  IF          LN+D+
Sbjct: 166 VELSSFQLISMRRSPDVAVITNITPNHLDMHKDMVEYIQAKKHIFLHQNGCSKTVLNFDN 225

Query: 230 S----FFELLKAKSHALGIKTIYSFGKSKNAD 257
           +      E ++ +     +K    FG   +AD
Sbjct: 226 AITVPMAEEVRGQCLGFSLKEPPRFGCYTDAD 257


>gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
 gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
          Length = 440

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++       +G    +IGVP  L  +  +V+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               +     HA  ++ + +FG  + A F + +  Q  E  +        S E+    +G
Sbjct: 218 ----VQTFPDHAAHLQVV-TFGVEQPAQFSVAE-HQGREYLFARDNAVLASSEL--SLVG 269

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +V  A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA V +   +    L
Sbjct: 324 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVFATLPLQ---L 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V   K  +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIVRSIRPELKSGDMVLL--SPACASF 419


>gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 504

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 22/218 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-----SIP 84
           I +DSR I   + F AI G   DG  +I HA+ +GA  ++  ++ +            IP
Sbjct: 26  IKLDSRKIEKGDIFLAIVGSQKDGRKYINHAISRGASAIIAESNSLTKEDEFIKFLNQIP 85

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  V ++   +   +  +   L  K  +I +TG+ GKTT   ++      I +  A +G+
Sbjct: 86  IVFVKNIRKKIVFFSKKLYGSLNKKMKLIGVTGTNGKTTVSHIVAQLAKLIGQKSAVMGT 145

Query: 143 YNNH-IGVPL------TLA--------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             N  IG  +      TL+        +M ++    I  + +S  G  +  T  +    A
Sbjct: 146 IGNGLIGEKIYPSELTTLSCFEICSTLKMFLEKSVKIVAMEVSSHGLDQGRTCSLSFSSA 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           + T I   HL   + IE    +K ++F   +    +F 
Sbjct: 206 IFTNITRDHLDYHNNIEHYELSKKKLFYEHDCKNRVFF 243


>gi|153940305|ref|YP_001392870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum F str. Langeland]
 gi|166224760|sp|A7GJB0|MURD_CLOBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152936201|gb|ABS41699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum F str. Langeland]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   ++ L+
Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DINLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
 gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
          Length = 487

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 26/244 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   F A  G H DG  +I  AV  GA  V+ ++       ++ +   GV 
Sbjct: 14  VTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDSQDFVWNAAIKVSNLGVR 73

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN--- 144
           ++   + ++A         K  +I +TG+ GKT+  + +  A+ ++ K  A IG+     
Sbjct: 74  ELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIGTIGSGF 133

Query: 145 ---NHIGVPLTLARMPVDV-------DFG-------IFELGMSHLGEIRFLTHLVRPHIA 187
              N  G+  T    P  +       D+        + E+    L + R   + +    A
Sbjct: 134 ADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGR--VNAIEFDFA 191

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     ++  ASAK ++F+      T  +N DD F + + A+S  +  K++
Sbjct: 192 VFTNLTRDHLDYHVTMDAYASAKQKLFD-WPSLRTAIVNADDDFGKKM-AESLRVNNKSL 249

Query: 248 YSFG 251
            ++G
Sbjct: 250 LTYG 253


>gi|121595960|ref|YP_987856.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|222112148|ref|YP_002554412.1| UDP-N-acetylmuramate--l-alanine ligase [Acidovorax ebreus TPSY]
 gi|166222950|sp|A1WC05|MURC_ACISJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765998|sp|B9MFR1|MURC_DIAST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120608040|gb|ABM43780.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|221731592|gb|ACM34412.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax ebreus TPSY]
          Length = 477

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 50/378 (13%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           RLR     IAI G+ GKTTT  ++   L  + +  T+  IG   N  G    L +     
Sbjct: 103 RLRKG---IAIAGAHGKTTTTSLVASVLGEAGLDPTF-VIGGRLNSAGTNAKLGQG---- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           ++ + E   S   +  FL  L  P +AV+T I   H+  +      +  A  +    +  
Sbjct: 155 EYIVVEADES---DGSFLNLL--PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPF 209

Query: 220 TGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            GT  L  D+ +  ++L      L    + S+G S++A+ +    +    Q    VQ + 
Sbjct: 210 YGTAILCIDNPAVRDILP-----LVTCPVTSYGLSEDAEVRAVDVRAVGTQMHFTVQRRN 264

Query: 279 ----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--- 331
                 ++VV +  G H   N L  + + + L    D  ++AL+ F    G G+R++   
Sbjct: 265 GVTLPDLQVVLNLAGEHNVLNALAVIAVAAELNVPDDALLRALAGF---TGVGRRFQRHG 321

Query: 332 --CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A   G FTLI E Y  +P  M A ++      P   GRR+ +             F 
Sbjct: 322 DLPAQGGGHFTLI-EDYGHHPVEMAATLAAARGAYP---GRRLVLAFQPHRYSRTRDCFE 377

Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQ 438
            D  +VL   +   ++ V+ +G   +   D    +  +  + T++ +F+         I 
Sbjct: 378 -DFVKVLGTADAVLLTEVYAAGEAPIVAADGRSLARALRVAGTVEPVFIDNVADMPQRIA 436

Query: 439 SSLVDGDVVVVKSSNSCG 456
           +   DGDVV+   + S G
Sbjct: 437 AGARDGDVVLCMGAGSIG 454


>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL F2-515]
          Length = 242

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 25/229 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            I+ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168
           ++   +    +    IG+    IG          P  LTL     D     V   + E+ 
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              L + R   +     +AV   ++  HL     +EE A+AK+ +F  L
Sbjct: 178 SHALVQGRV--YGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQL 224


>gi|322807843|emb|CBZ05418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum H04402 065]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   ++ L+
Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DINLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|312136564|ref|YP_004003901.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224283|gb|ADP77139.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 492

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           + + K  ++ ITG+ GKTTT+EML   + +S ++     +    N   +P   AR+P DV
Sbjct: 102 KYKVKKPVVGITGTNGKTTTREMLKNILKISGLEVPEHHLNIQGNTEFIPPLQARLPGDV 161

Query: 161 DFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              + E+G   +  EI+         + VIT I+  HL N S  +E    K EI E  +K
Sbjct: 162 --AVVEIGTFGVKNEIKRSAKNSNVTVGVITNISRDHLKNIS-FQEYVECKKEITEVAKK 218

Query: 220 TGTIFLNYDD 229
              + LN DD
Sbjct: 219 ---LVLNADD 225


>gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis FRI909]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 161 --EYLITELSSFQLLGIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218

Query: 223 IFLNY 227
           +  NY
Sbjct: 219 LICNY 223


>gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis ATCC 12228]
 gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis ATCC 12228]
 gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU028]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 161 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218

Query: 223 IFLNY 227
           +  NY
Sbjct: 219 LICNY 223


>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 105/265 (39%), Gaps = 54/265 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  ++  +    +K     +G   N IGVP  L  +  D D  + EL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVM---VKAAGLDVGVGGN-IGVP-ALDLLEQDADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +   AK  IF   +      +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIF---DHAALAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                   ++       + +FG S N DF L              ++ G    ++ HG  
Sbjct: 218 Q-------ETFPDAEMPLVTFG-SDNQDFGL--------------EVDGNRTWLLDHGQR 255

Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335
                    +G H   N L+ L ++     D   A+ AL     K   G  +RC   A N
Sbjct: 256 VVASDELKLVGKHNLSNALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310

Query: 336 QGFFTLIDESYNANPASMKAAISVL 360
           QG    +++S   N AS  AA+S L
Sbjct: 311 QG-VKWVNDSKATNIASTMAALSGL 334


>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
 gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
          Length = 498

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 38/376 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           + G++ +S +  P + F  + G   DG DF   A+  GA   +V+    ++      S +
Sbjct: 24  ITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETDSDT 83

Query: 83  IP-VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           IP V    D+  A  ++A A       T  ++ +TG+ GKTTT  ++   LS++ +  A 
Sbjct: 84  IPCVIPAADMTTACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLSNLDQPTAL 143

Query: 140 IGS-YNNHIGV-PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183
           +G+ Y    G   + +   P  V+              FG+ E+    L + R L    R
Sbjct: 144 LGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFR 203

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV T +   HL     +++   AKA +F      G   +N DD + + L A+   LG
Sbjct: 204 --VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR---LG 258

Query: 244 IKTIYSFGKS-KNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               +S+  S  +AD       ++    +  +   +   S  +    +G +   N+L  L
Sbjct: 259 SDRFWSYSVSDPSADIWADSLVYQPTGIKGVLHTPMGSASFSLPL--VGQYNLSNLLAAL 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D+   + +L  F    GR +R + +  Q    ++D  Y   P S++   ++L
Sbjct: 317 GAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQDITVIVD--YAHTPDSLE---NLL 371

Query: 361 SQISPHGEGRRIAVLG 376
               P   GR I V G
Sbjct: 372 KASRPFIPGRMICVFG 387


>gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           coelicolor A3(2)]
 gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
 gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptomyces coelicolor A3(2)]
 gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
          Length = 471

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           + G   +PV+G  ++   L  L      R  A  +A+TG+ GKTTT +ML   L +    
Sbjct: 88  AAGQAGVPVWGDVELAWRLRGL----NGRKPAPWLAVTGTNGKTTTVQMLASILKAAGLR 143

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A +G    +IGV L L  +  + ++ +  + +S   ++ +   L R H A +  +AP H
Sbjct: 144 TAAVG----NIGVSL-LDAVTGEQEYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDH 196

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           L     +E  A+ K  I+EG      ++   D +  +L++A     G + I
Sbjct: 197 LDWHGSMEAYAADKGRIYEG-NHVACVYNVADKATEDLVRAADVEEGCRAI 246


>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 483

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 32/246 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR       F AI+G   DGH FI  A+  GA  ++V  D+        + +  V+D  
Sbjct: 29  DSRIKTNAGLFIAIEGFKTDGHQFIEAAIANGAKAILVQKDVEI---KEDVTIIKVEDTR 85

Query: 93  GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            A+  +A  A      +  ++ +TG+ GKT+   +L   L +  K    IG+  N IG  
Sbjct: 86  LAMALVANNAYGHPSKQFELVGVTGTNGKTSITFLLGQILEAYHKKIGIIGTIENRIGSQ 145

Query: 151 LTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +  A                     VD  + E+    L   R      +  + + T +  
Sbjct: 146 ILKAERTTPESLDLQALFKKMVESQVDTTLMEVSSHALALSRVAGSDFK--VGIFTNLTQ 203

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKS 253
            HL     +E  A+AKA++F   E   T  +N D  +  E++K  +  L      ++   
Sbjct: 204 DHLDFHQTMENYAAAKAKLFTMCE---TGIVNKDSDYINEIIKGATCNL-----VTYAID 255

Query: 254 KNADFQ 259
           K+AD++
Sbjct: 256 KDADYK 261


>gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114]
 gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114]
          Length = 487

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 137/321 (42%), Gaps = 53/321 (16%)

Query: 170 SHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217
           + LG  RFL            HL +P ++++T I   H+  + G  E +     +    L
Sbjct: 166 ARLGSSRFLIAEADESDASFLHL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNL 224

Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              G   +  DD    ELL   S     + + ++G S +AD +L  ++Q  +QS+  VQ 
Sbjct: 225 PFYGQAVMCVDDPVVRELLPQVS-----RQVITYGFSDDADVRLINYRQVGQQSFFTVQR 279

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331
           + ++ +++V +  G H A N    + + +    + +  + AL  F   EG G+R+     
Sbjct: 280 KDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNF---EGAGRRFDQLGE 336

Query: 332 CALNQGFFTLIDESYNANPA----SMKAAISVLSQ------ISPHGEGRRIAVLGDMCEM 381
                G   L+D+ Y  +P     ++KAA +  ++        PH   R   +  D   +
Sbjct: 337 FETGNGSAMLVDD-YGHHPTEVDVTIKAARAGWAEKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFL 435
            +     ++D+  +L +Y+     ++G    A   AL R+I         +  T++ L  
Sbjct: 396 LD-----NVDVLIMLDVYSAGETPIAG----ADGRALCRTIRGRGKIDPVFVPTIEALPP 446

Query: 436 FIQSSLVDGDVVVVKSSNSCG 456
            + + + +GD+++ + +   G
Sbjct: 447 VLANIIQEGDLILTQGAGDVG 467


>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
          Length = 452

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFEL 167
           +++AITGS GKTTT  ++      I +          +IG+P+  +     D  + + E+
Sbjct: 109 SVVAITGSNGKTTTTSLI----GEILRGAGVPTLVGGNIGLPVVEMVAESTDTTWSVLEI 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +        P IAV+  I P HL      E+ A AK  I E       + LN 
Sbjct: 165 SSFQLETVETFA----PKIAVVLNITPDHLDRHGTFEKYAEAKTRITEMQTPADFLVLNA 220

Query: 228 DDSFFELLKAKSHA 241
           +D   +++ AK+ A
Sbjct: 221 EDKPTQMVAAKTKA 234


>gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
 gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 148/374 (39%), Gaps = 44/374 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87
           I  DSR +   + F A+ G + DG  FI  AV+ GA  +V         +  +    V  
Sbjct: 26  IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVCLPGGAEAEAARAAGCTVVH 85

Query: 88  VDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            DD   AL +LA  AR  + +    ++ +TG+ GKTT+  +L    ++       +G+  
Sbjct: 86  HDDPREALWRLA-EARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTVS 144

Query: 143 --YNNHI-GVPLT----------LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +  H    PLT          LA M    VD  + E+    L + R     V    A 
Sbjct: 145 YRWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQRVCG--VPFAGAS 202

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSF-FELLKAKSHALGIKT 246
            + +   HL     +E    AK+ +F  L +   +  +N DD +   LL+    AL    
Sbjct: 203 FSNLTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELCPRAL---- 258

Query: 247 IYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             SFG  K    Q   W +     ++   + + L G+  E+    +G   A N+L    +
Sbjct: 259 --SFGLQKALPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQAL 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D  ++ L  FH   GR +R   A  +     +D ++  +     A ++VL  
Sbjct: 317 ALELGLMPDD-LRHLEGFHGVCGRLERVPNA--RKLHVFVDYAHTPD-----ALVNVLKA 368

Query: 363 ISPHGEGRRIAVLG 376
           +   G  R + V G
Sbjct: 369 LRGAGFKRIVTVFG 382


>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 502

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 154/394 (39%), Gaps = 37/394 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR I P   F  + G H DGHD+   A++ GA  +V   ++  S  S ++ + 
Sbjct: 23  ITNLDTDSREIRPGGMFVCVPGYHVDGHDYAEQAIRNGAVAIVAEREL--SGLSENVTLI 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L  LA A       +  +I ITG+ GKTTT  M+   L+  ++    IG+  
Sbjct: 81  TVPDTRRILPILANAFYGDPTQRLKLIGITGTNGKTTTTHMVDKILNDARRKTGIIGTLY 140

Query: 145 NHIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFL---TH-----LVRP---HIAVIT 190
             IG     TL   P  +     F   +SH GE   L   +H      VR       V T
Sbjct: 141 MKIGNHAEKTLNTTPDTIQLMRYFHTMISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIFLNYDDSFFELLKAKSHALGIK 245
            ++  HL     +E   + K  +F  L  +         LN DD        ++ A    
Sbjct: 201 NLSHDHLDFHKTMESYRNTKELLFAQLGNSNRDMLKKAVLNADDDASSYYAKRTSA---- 256

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I ++G    AD +        E      +    S EV     G H   N L  +    +
Sbjct: 257 QIITYGIQNQADVRATHIHHTREGCAFHAETPWGSSEVNLKVHGAHNIYNALAAMTTCLL 316

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   ++L  F    GR +  +    + F  ++D  Y  NP  +KA +     I+ 
Sbjct: 317 EGIPLEEIRESLGQFAGVHGRFQEIQTG--RRFGVVVD--YAHNPDGLKATLQSAKAIT- 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              G+ I V+G  C  GE  +S    +A++ S Y
Sbjct: 372 --SGKMICVMG--CR-GERDRSKRPIMADIASSY 400


>gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
 gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 134/339 (39%), Gaps = 48/339 (14%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T +      L       IPV    ++L  L +L          + +AI G+ 
Sbjct: 66  GADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGTH 116

Query: 118 GKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L + +     I G   N  G   T AR+      G  E  +    E  
Sbjct: 117 GKTTTTSMVAALLDAGEFDPTVINGGIINAYG---TNARL------GAGEWMVVEADESD 167

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   E + +A  +  E +   G   +  D    + L 
Sbjct: 168 GTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNAFRDFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GIG 289
            K   +  + I ++G++  AD +L   K     S  +V  + +     H          G
Sbjct: 228 GK---IEDRRIITYGENPQADVRLLDLKPNGGASTFKVAFRDRKANTAHEIADLKLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+    +    ++ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAGFG---GVRRRFTKTGDWNGVSIIDD-YGHH 340

Query: 350 P----ASMKAA-----ISVLSQISPHGEGRRIAVLGDMC 379
           P    A +KAA       V++ + PH   R  ++  + C
Sbjct: 341 PVEIAAVLKAARESTKTKVIAVVQPHRFTRLQSLFEEFC 379


>gi|299139512|ref|ZP_07032686.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598440|gb|EFI54604.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
          Length = 450

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           +  ++ ITGS GKTTT    T  +  I K          +IG P+T L        + + 
Sbjct: 106 QGEVVGITGSNGKTTT----TTLMGEIFKAAGRPTLVGGNIGKPVTELVGESTPEAWSVL 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L  +       RP IA++  I P HL      E  A+AKA I E       + L
Sbjct: 162 EVSSFQLETVESF----RPRIAMVLNITPDHLDRHGNFENYAAAKARITEFQTAEDFLIL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           N +D   +++ AK+ A     IY F   + 
Sbjct: 218 NAEDKPTQMVAAKTKA----QIYWFSPRRQ 243


>gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis RP62A]
 gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis RP62A]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 161 --EYLITELSSFQLLGIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218

Query: 223 IFLNY 227
           +  NY
Sbjct: 219 LICNY 223


>gi|197124214|ref|YP_002136165.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
 gi|196174063|gb|ACG75036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
          Length = 462

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 43/272 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--- 152
            ++ +AAR      I+ ITG+ GK+TT  +    L+  ++T+        ++G PL+   
Sbjct: 99  GEVELAARFLDGLPIVGITGTNGKSTTTALTGALLARDRRTF-----VGGNLGTPLSELV 153

Query: 153 LARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           L+  P D    + EL    L  I RF     R  +A +  + P HL  +  ++  A+AKA
Sbjct: 154 LSGEPADA--AVVELSSFQLEGIERF-----RARVAAVLNVTPDHLDRYPDVDAYAAAKA 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--------- 262
            +F   +       N  D     +   S A     +++FG    A    R          
Sbjct: 207 RLFATQQPDDVAVANARDPRALAMAGASRA----DLHTFGFGAPAPASARDEGGEPGPEG 262

Query: 263 ---WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              W     ++    QL+ +++   H+      A   ++   ++ +    V   + A   
Sbjct: 263 TAIWFTPRGRAPERYQLRNRALRGRHN---RENAMAAVLCARLMGVPGEAVQAGLDAFPG 319

Query: 320 FHPK-----EGRGKRYRCALNQGFFTLIDESY 346
            H +     EGRG  +   +N    T +D ++
Sbjct: 320 LHHRLELVAEGRGVEW---VNDSKATNVDSTF 348


>gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 101

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    S+P   
Sbjct: 22  DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 77

Query: 88  VDDVLGALNKLAVAAR 103
           V D   AL +L    R
Sbjct: 78  VIDTRKALAQLGAMNR 93


>gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           lividans TK24]
          Length = 475

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           + G   +PV+G  ++   L  L      R  A  +A+TG+ GKTTT +ML   L +    
Sbjct: 92  AAGQAGVPVWGDVELAWRLRGL----NGRKPAPWLAVTGTNGKTTTVQMLASILKAAGLR 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A +G    +IGV L L  +  + ++ +  + +S   ++ +   L R H A +  +AP H
Sbjct: 148 TAAVG----NIGVSL-LDAVTGEQEYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDH 200

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           L     +E  A+ K  I+EG      ++   D +  +L++A     G + I
Sbjct: 201 LDWHGSMEAYAADKGRIYEG-NHVACVYNVADKATEDLVRAADVEEGCRAI 250


>gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
 gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
          Length = 489

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 146/379 (38%), Gaps = 56/379 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR  AP   F A+ G   DG  ++     K A        +        +PV 
Sbjct: 27  IGGITADSRKAAPGSLFVAVAGTKADGAAYV-----KDAVAKGAVAVVSGHAVEADVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    L+  A     +   T++A+TG+ GKT+         S +++ +A  G     
Sbjct: 82  VVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVA-------SFVRQIWAFAGHAAAQ 134

Query: 147 IGVPLTLARMPVDVDFG-------------IFEL---GMSHLG--------EIRFL--TH 180
           IG    +A  P   D+G             + EL   G++H          + R L   H
Sbjct: 135 IGTTGVIA--PGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVH 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFE--LLKA 237
           L     A  T +   H+     IE+  +AK  +F+ L EK     +  DD + +  +  A
Sbjct: 193 L---SAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAA 249

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   L ++T+   G+       L++ +    +  +EV   G   EV     G     N L
Sbjct: 250 REAGLEVRTVGRNGQY----LTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVANAL 305

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+         TA+KAL       GR +      N G    +D  Y   P +++   
Sbjct: 306 VAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKN-GALAYVD--YAHKPDALE--- 359

Query: 358 SVLSQISPHGEGRRIAVLG 376
           +VL+ + P   GR I V G
Sbjct: 360 NVLTSVRPFTSGRIITVFG 378


>gi|239787357|emb|CAX83834.1| UDP-N-acetylmuramate--alanine ligase [uncultured bacterium]
          Length = 450

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 25/269 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA++GS GKTTT  M+   L+  +     I G   N  G  ++L         G + +  
Sbjct: 104 IAVSGSHGKTTTTAMMGALLTEAQYDPLIINGGIVNAFGSNVSLG-------LGSWCVVE 156

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +  FL   ++P I+VIT I   H+  F   E +  A     E     G      DD
Sbjct: 157 GDESDGSFLN--MQPIISVITNIDLEHMEFFKTQESLEKAFQTFIENTSILGCTLACIDD 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGI 288
               ++  K+      TI ++G+S+N+D +L    +    S+  V+ + K  + +    +
Sbjct: 215 PLAAVVIKKTPH---HTIITYGESENSDIRLTALDKGITGSYFSVKTRRKEYKNLFLPMM 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTLIDESY 346
           G H   N L  +G    L  D DT  + L  F   +G  +R+  R  +N   F    + Y
Sbjct: 272 GKHNVLNSLAIVGAGEFLDLDEDTIRETLKNF---QGVQRRFTIRGTVNSAVFV---DDY 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  ++  I    Q   +G  + +A++
Sbjct: 326 AHHPREIETVIKSAKQ---YGATKIVAIV 351


>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
 gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 497

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 10/215 (4%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           FG+ E+    L + R      +  +A  T +   HL     +E+  +AKA++F      G
Sbjct: 176 FGVMEVSSHALAQDRVWG--CQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTADYLKG 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN DD F + L   +  L     +++G SK+ADF+       S      V     S 
Sbjct: 234 RAILNGDDPFGQRL---AQQLPRDRYWTYGLSKDADFRAENLNYRSNGVTGAVHTPLGSG 290

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G     N+L  + + + +   ++  + AL  F    GR ++ R    Q    +
Sbjct: 291 TLDSPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVV 350

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D  Y   P S++   ++L    P   G+ I V G
Sbjct: 351 VD--YAHTPDSLE---NLLRAARPFIPGKLICVFG 380


>gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 39/346 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            HDLL    G    I     V+G+++DSR++ P + FFA+ G   DG  FI  A+  GA 
Sbjct: 3   LHDLLGDAAGRDPEIAAVD-VSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAIAAGAI 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----T 122
            V   +       +LS+P   + +   AL   A     R  ATI A+TG+ GKT+    T
Sbjct: 62  AVAGGSPPGT---ALSVPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTSVAAFT 118

Query: 123 KEML-----------TIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +++            T+ L S K+T Y  + + +     P+ L R  +D    I + G++
Sbjct: 119 RQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPD-----PIALHRQ-IDE---ITQDGVT 169

Query: 171 HL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-- 221
           HL       G  ++    VR      T ++  H+     +    +AK  +F  L   G  
Sbjct: 170 HLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGA 229

Query: 222 -TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             I  +++ S   +  A++  L + T+ + G    A  +L           +++Q  G+ 
Sbjct: 230 AVISADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRM 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +    +G    +N L+  G+     +D     +AL      +GR
Sbjct: 290 YTIRLPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGR 335


>gi|222823643|ref|YP_002575217.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
 gi|222538865|gb|ACM63966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
          Length = 466

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 46/286 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIF 165
           K  II IT S GKT+ K  L   L    K Y    S N  +G+   +   +  + +  I 
Sbjct: 149 KLKIILITASFGKTSIKNFLYEVLKDEFKCYKTPRSVNTFMGIVKDINENLENNTEIYIV 208

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK---- 219
           E G     +I  +T  + P I ++  I  AHL  F   + I +AK +  +   LEK    
Sbjct: 209 EAGAREQNDILEITEFLNPQICIVGEIGLAHLEYFKTQDNIRNAKLQALKSKRLEKYFLH 268

Query: 220 TGTIFLN--YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           + T++ N  YDD    L   ++   G+            DF++R              L 
Sbjct: 269 SSTLYENEFYDDC---LSDVRASLEGL------------DFKIR--------------LD 299

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               +   + +G   A N+ + + +   L   ++  IK++S     E R +     +++ 
Sbjct: 300 DNIYDFHANLLGAFNAYNISVCILLAYYLGIKIEDIIKSISNLKAVEHRLQ----VISKE 355

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              +ID+ +N N   M  +     ++    +GR++ V   + E+ E
Sbjct: 356 PKFIIDDGFNGNFKGMSQS----YELCKSYQGRKVLVTPGIVEVNE 397


>gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A II ITG+ GKTT   ++    +  ++     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIGITGTNGKTTVTSLIGDMFNKSREN----GRLSGNIGFVASKVAQEVKTD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     RPHIA+IT +  AHL     +E   +AK  IFE   ++  
Sbjct: 161 --EYLVTELSSFQLLGIEHYRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDY 218

Query: 223 IFLN 226
           +  N
Sbjct: 219 LIFN 222


>gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414


>gi|157369004|ref|YP_001476993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia
           proteamaculans 568]
 gi|157320768|gb|ABV39865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia
           proteamaculans 568]
          Length = 439

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 56/366 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++        
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFMARGVTPRVMDTRISPP---GLDKLPESVERHLGDLNQD 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  M  +  +LS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLLAADLIVASPGMALATPALSAAADAGVEIVGDVELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T    +T  +  + K          +IG+P L+L R   +    + EL    L E  F  
Sbjct: 118 T----VTTLVGEMAKAAGWAVGVGGNIGLPALSLLRQ--ECQLYVLELSSFQL-ETTFSL 170

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           H      A I  +   H+  +  G+++  +AK  ++E  E      +N DD+    ++  
Sbjct: 171 HAA---AATILNVTEDHMDRYPFGLQQYRAAKLRVYENAE---VCVVNADDALTMPVRGA 224

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
                 K   SFG +   D+ L   +Q  E +W+ V+    L  + M++     G H   
Sbjct: 225 D-----KRCISFG-ADVGDYHLN--RQLGE-TWLRVRGEKILNTREMKLT----GRHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +++KAL+ F    G   R++ A        I++S   N  S +
Sbjct: 272 NALAALALADAVNIPRASSLKALTTF---TGLAHRFQLAWEHNGVRWINDSKATNVGSTE 328

Query: 355 AAISVL 360
           AA++ L
Sbjct: 329 AALNGL 334


>gi|83312945|ref|YP_423209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Magnetospirillum magneticum AMB-1]
 gi|118595663|sp|Q2W0H5|MURD_MAGSA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82947786|dbj|BAE52650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Magnetospirillum
           magneticum AMB-1]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A ++A+TG+ GK+TT  +L   L       A  G+        L L  +P D  + + EL
Sbjct: 110 ARMLAVTGTNGKSTTTTLLAHVLDECGLPVAAGGNLGT---AALDLPELPGDGRY-VLEL 165

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L     LTH ++  +A++  + P HL    G+    +AK  +F+ L   G   +  
Sbjct: 166 SSYQL----ELTHSLKLGVAILLNVTPDHLGRHGGMAGYIAAKRRVFDFLTPGGAAVVGI 221

Query: 228 DDSFFELLKAKSHALGIKTI 247
           DD     + A+    GI+ +
Sbjct: 222 DDGPCRAIVAELDRRGIRVV 241


>gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
 gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
          Length = 454

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A IIA+TG+ GKTT    +T  +  + +     G  + +IG   +     V  D  
Sbjct: 112 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSD-- 165

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   K   
Sbjct: 166 --EYLITELSSFQLLGIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 223

Query: 223 IFLNY 227
           +  NY
Sbjct: 224 LICNY 228


>gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 514

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 141/377 (37%), Gaps = 64/377 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ +   S+ +  +  F AIKG   DGHDFI  AV  GA   +V  D V       I   
Sbjct: 28  ISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIVE-DFVEE----DILQI 82

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143
            V +   AL K+A         K  +  IT S GKT+T  M               G+ Y
Sbjct: 83  KVKNSRIALAKVASIFFGEPSKKLKVTGITASNGKTSTAFMTKCIYDKAGYNTGISGTVY 142

Query: 144 NNHIGVPL-TLARMPVDVD-----FGIFELGMSHL--------GEIRFLTHLVRPHIAVI 189
             +  V + ++   P   D     + +   G+ H+        GE+    +     I   
Sbjct: 143 TKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSSAGELA-RAYATDFDIVTF 201

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--------------- 234
             I P H+ N    E     K+ +    +      LN D   FEL               
Sbjct: 202 NNITPEHIVNHGSFERYYHVKSRLIRHAKDDCVAILNSD---FELINDLRNNTKAQVVTY 258

Query: 235 -LKAKSHALGIKTI---YSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            LK     + I  +     FGK K   N D +L+            + ++ +S +V    
Sbjct: 259 SLKNNLEDISIDNLDLSTGFGKFKFIVNRDIKLKG-----------ITIKKQSFDVELKV 307

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            GY    N ++ + I  +   D+DT +  +  F    G  +R+    ++G F ++D+ + 
Sbjct: 308 AGYSSVMNAIVAITIGLVNGIDLDTILAGIQDF---TGVERRFEVIFDEG-FKIVDDHF- 362

Query: 348 ANPASMKAAISVLSQIS 364
           AN  +++  +  LS++ 
Sbjct: 363 ANKNNIEVTLDTLSKMD 379


>gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. Hall]
 gi|166224758|sp|A7FZA3|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224759|sp|A5I7P2|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A str. Hall]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   +++L+
Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DIKLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414


>gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris]
          Length = 495

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 155/379 (40%), Gaps = 50/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIP 84
           V+G+ +DSR++ P +AF AI G    G  F   A+  GA  ++      A   + + +I 
Sbjct: 22  VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILFEPPAPADLPVPADAIA 81

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V G+   LG L      A  ++   +I +TG+ GKT+T ++L  AL+ +      IG+  
Sbjct: 82  VPGLRARLGVLADHFHGAPSQAM-RMIGVTGTNGKTSTVQLLAQALTLLGTPTGTIGT-- 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR----------FLTH--------LVRPHI 186
             +GV L  A +P      +     + L ++R            +H         V+  +
Sbjct: 139 --LGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGRVDAVQFDV 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKAKSH 240
           AV T +   HL     + +  +AKA++F   GL       +N DD+F    F  L    H
Sbjct: 197 AVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRAA---VVNLDDAFGRTLFAALDPALH 253

Query: 241 ALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG-IGYHMAQNML 297
           A+G+ +    G +  A D QL       +   ++  L  G++   V    +G     N+L
Sbjct: 254 AIGVSSRAQAGATVQAQDLQL-------DHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLL 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G +  L        + L    P  GR  R   A       L+   Y   P +++ A+
Sbjct: 307 AVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 363

Query: 358 SVLSQISPHGEGRRIAVLG 376
           + L     H + R I V G
Sbjct: 364 TSLRS---HAQDRLICVFG 379


>gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLTRYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414


>gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
 gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
          Length = 473

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 9/130 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165
           KA II ITGS GKTTT   +   L +        G    +IG P+  A +    D + + 
Sbjct: 111 KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAG----NIGTPVCEAAVDAKSDEWMVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L   +      RP +A +  +A  HL    G+E+  ++KA +F       T  +
Sbjct: 167 ELSSFQLKGTKDF----RPTVACLLNVAETHLDYHGGMEDYVASKARLFANQTAADTAVV 222

Query: 226 NYDDSFFELL 235
           N+DD     L
Sbjct: 223 NWDDPVCREL 232


>gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           TXDOH]
          Length = 465

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +      L  K +  +G + +A  +    +    +    V  +G+  + VV +
Sbjct: 218 DDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLID 343
             G H  QN L  + I + L    DTAI +AL+ F+    R +RY    A   G +TLID
Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADTAIQQALAEFNGVGRRFQRYGEIPAAGGGAYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +      GDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
 gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
          Length = 470

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 31/217 (14%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           + P   G DF   A   GA   + +      + +   PV  V D  G +   A+AAR+  
Sbjct: 8   RAPASTGADFAAQAASLGAVAALTDPAGAERVLAAGRPVLVVGDPRGRMG--ALAARIYG 65

Query: 107 KAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARM-PVDV 160
                   I ITG+ GKTTT  ++   L +   +   IG+    IG   L   R  P   
Sbjct: 66  NPGDGLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEAT 125

Query: 161 DF----------GIFELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           D           G+  + M   SH   LG +  + H     +AV   ++P H+   SG+E
Sbjct: 126 DLQALFAVMRERGVDAVAMEVSSHALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGME 181

Query: 205 EIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240
           +   AKA++F     + G +  N DD++   L A++ 
Sbjct: 182 DYFQAKAQLFTRARSRRGVV--NRDDAYGRRLVAEAE 216


>gi|262195225|ref|YP_003266434.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
 gi|262078572|gb|ACY14541.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
          Length = 472

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 144/367 (39%), Gaps = 70/367 (19%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIG 141
           IPV    ++LG L ++          T +A+ GS GKTTT  M+ ++ +++     A IG
Sbjct: 90  IPVIPRAEMLGELMRMK---------TGLAVAGSHGKTTTTTMIASVLMAAGMDPTAVIG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199
              N +G+         +  +G  E  ++   E    FLT  + P  AV+T + P HL +
Sbjct: 141 GRVNALGL--------ANARWGKSEYLVAEADESDGSFLT--LAPTFAVVTNLDPEHLDH 190

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +  ++ +  A       L   G   +  D++  + +  +      K   ++G +  A ++
Sbjct: 191 YGSVDNLHRAFINFLNRLPFYGLAAVCLDNAGVQAILPQIQ----KRFVTYGMASQATYR 246

Query: 260 LRK------------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            R             W++  E   + + + G+           H   N L  L I   L 
Sbjct: 247 ARNIRPEGLVTRYVAWRRAEELGEIHLPMPGQ-----------HNVLNSLAVLAICDALD 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358
              +   KAL  F   EG  +R+         T++D+ +  +PA +++ ++         
Sbjct: 296 VPFEVTAKALQSF---EGIQRRFTVRGEVAGITVVDD-FGHHPAEVRSTLAGARSAFPSR 351

Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD 416
            +++   PH   R         +  E ++SF+  D   +  +++     + G    AL  
Sbjct: 352 RIIAAFQPHRYTR------TRDQFQEFARSFYDADKVIITDVFSAGEAPIEGATAEALAK 405

Query: 417 ALPRSIH 423
           A+  S H
Sbjct: 406 AVSTSGH 412


>gi|159038774|ref|YP_001538027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salinispora
           arenicola CNS-205]
 gi|157917609|gb|ABV99036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinispora
           arenicola CNS-205]
          Length = 448

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 139/358 (38%), Gaps = 44/358 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + +TGS GK+TT  +++  L+++ +       +  +IGVP TL  +P   D  + EL
Sbjct: 111 ARTVGVTGSKGKSTTSSLISHLLAAVDRPNV----FGGNIGVP-TL-ELPA-ADLYVLEL 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
                 ++        P +AV+T + P HL    G  E    K  +   G E   TI +N
Sbjct: 164 SSYQCSDL-----TDSPRVAVVTALFPEHLDAHGGEREYYRDKLNLLAHGPE---TIVVN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D         +  LG + +   G                   W  +  Q      V  
Sbjct: 216 GADPRL------AAELGDRPVVRAGTPDTTYVA----GGPDGTPWFHLGDQPLFPRAVLP 265

Query: 287 GIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +G H   N+ + L ++ +L  DV    DT   A++ F   +G   R    ++    T +
Sbjct: 266 LVGRHNEGNLCVALSVLDVLGVDVRARRDTVAVAVAEF---QGLAHRLTEIVDPSGLTFV 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++   +P +   AI          +GR + V+    + G         LAE      + 
Sbjct: 323 DDTLATSPYAAMHAIDAY-------DGRALTVIVGGADRGLDYTPLREHLAE--REITVI 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSCGFYR 459
            V  SG  ++A  D LP+ +    ++ + G     +     G VV++  ++ S G +R
Sbjct: 374 GVPDSGSRIVAALDGLPK-VRCEVTDDLVGAVRLARRVTPAGGVVLLSPAAPSYGRFR 430


>gi|242374030|ref|ZP_04819604.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348281|gb|EES39883.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  IE++  A  ++   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIEDVYDAFQDMAHNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L+          IY +G  ++ D   +  +   + +  +V + G+  + 
Sbjct: 201 IAWGDDDYLRKLEVDV------PIYYYGFKESDDIYAKNIQITEKGTQFDVYINGEYYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   D++   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQFGDHNILNTLSVIAISYLEKMDIENIKEALETFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +      LS++  + L
Sbjct: 311 DD-YAHHPREISATIESARKKYPNKEVVAVFQPHTFSRTQAFLDEFA--SSLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|219685663|ref|ZP_03540477.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04]
 gi|219672779|gb|EED29804.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04]
          Length = 468

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 23/183 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139
           L+IP+    +VLG L++         K   I I GS GKTTT   L I    +       
Sbjct: 96  LNIPILSYPEVLGELSR---------KHYSIGIAGSHGKTTTTAFLGILFDKLGLNPNVI 146

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197
           +GS     G   T+A        GI ++ +    E +   H +   P++ ++T +   H+
Sbjct: 147 VGSSVKDFGDNSTIA--------GISDIFIVETCEYK--KHFLHFSPNMLILTNVDYEHV 196

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   E +  A  +    L+K G + +N DD     +K+K +   I  I+SFG    ++
Sbjct: 197 DFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSKINREDI-NIFSFGSRDLSN 255

Query: 258 FQL 260
           FQ+
Sbjct: 256 FQI 258


>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7424]
 gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
          Length = 496

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV T +   HL     +E+  +AKA +F     TG   +N DD + + L    ++L  
Sbjct: 201 EVAVFTNLTQDHLDFHKDMEDYFNAKALLFSPDYLTGRAIINLDDPYGQRL---INSLSG 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGI 302
           + ++S+  + N D          E + +   L     EV  +   +G +   N+L  +G 
Sbjct: 258 EKVWSYSVN-NPDANFYTKDLTYEANGVSGILHTPIGEVNFYSPLVGQYNIANLLAAVGA 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L  D+ + +++L +F    GR +R + +  Q    ++D  Y   P S++   ++L  
Sbjct: 317 VVHLGVDLKSIVESLPLFSAVPGRMERVKISDKQDISVIVD--YAHTPDSLE---NLLKA 371

Query: 363 ISPHGEGRRIAVLG 376
             P  EG+ I V G
Sbjct: 372 ARPFIEGKMICVFG 385


>gi|78221634|ref|YP_383381.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
 gi|109892706|sp|Q39YL8|MURC_GEOMG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78192889|gb|ABB30656.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
          Length = 461

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 42/262 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  M+  AL+   I  T   IG   N +G    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSMVATALTHGGIDPTI-VIGGKLNTLGTNAKLGQ-------GQFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P IAV+T I   HL  ++ GIE+I     +    +   G   L  
Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D +  E+L         K   ++G S  AD +              ++L+G +   V H
Sbjct: 218 EDRNIAEILPRVK-----KRFVTYGLSSQADIRA-----------THIRLEGGTTSFVAH 261

Query: 287 GIGYHM---------AQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             GY M         A N+L  L  +++ +  DV  A +    F    G G+R++     
Sbjct: 262 YKGYRMGEVSFAMPGAHNVLNALACIAVAMELDVPFA-QIQEGFAKFGGVGRRFQVKGEV 320

Query: 337 GFFTLIDESYNANPASMKAAIS 358
              T++D+ Y  +PA ++A ++
Sbjct: 321 NGITVVDD-YGHHPAEIRATLA 341


>gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 495

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 53/365 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+ +++ +    + F A++G    G + I  A++KG   V+V++  +      +IPV 
Sbjct: 52  INGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEKGCVAVLVDSHDL----ECAIPVI 107

Query: 87  GVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            ++++   L  LA A   + +K  +I +TG+ GKT+    ++  LS +      IG+   
Sbjct: 108 RIENLKQYLPALASAYYSQATKVEVIGVTGTNGKTSVGYFISQMLSELGIKNGFIGT--- 164

Query: 146 HIGVP---LTLARMPVDVDFGIFE-LGMSHLGEIRFLTHLVRPH-------------IAV 188
            +G+    +  A    D+ F +++ L   HL  I      V  H              A+
Sbjct: 165 -LGISNSDVASANTTPDI-FTLYKALHQYHLDNINTAVLEVSSHGLDQNRVAGLNFKQAI 222

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTI 247
            T +   HL     ++E    K ++F   +   ++ +N DD++ +  L A          
Sbjct: 223 FTNLTQDHLDYHQTLDEYRQVKLKLF-SFDSIQSVIINQDDAYHQDFLDA---------- 271

Query: 248 YSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            S GK K   + ++ +++ +  EQ ++  QL     E+    +G     N+L     V  
Sbjct: 272 -SKGK-KQTTYSIKDFEKITINEQGFL-CQLDNFVFEIPL--LGKFNLSNVLAAFNSVEQ 326

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +  I  LS   P  GR ++ + AL       +D  Y   P ++  AI+ L +  P
Sbjct: 327 LGFSREGIIPLLSRLFPPLGRMQKIKKAL-----AWVD--YAHTPDALANAITTLKEHHP 379

Query: 366 HGEGR 370
             + R
Sbjct: 380 EHKIR 384


>gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 541

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPV 85
           V  ++ DSR   P   F A+ G   DGHDF+  AV++G  +V+      + +  +  +  
Sbjct: 27  VTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVVLCQPGCRLPTEKAPEVLH 86

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               D   A  +L  A R     +  +I ITG+ GKTT   +L   +         IG+ 
Sbjct: 87  LATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYLLEDLIRRAGGEPGVIGTV 146

Query: 144 N 144
           N
Sbjct: 147 N 147


>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 484

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 155/387 (40%), Gaps = 38/387 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR       F A++G H DGH F+  A+++G  L++V  + +       +   
Sbjct: 24  VTSLCFDSRKANEGSLFVAVRGVHTDGHLFVEKAIEQGCTLIMV--EEMPEKKHEDVTYM 81

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL   A         +  ++ +TG+ GKTT   +L    +++      + +  
Sbjct: 82  MVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQ 141

Query: 145 NHIG---VPLT-----------LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N IG   +P T           L R  VD   D+   E+    + + R     +R    +
Sbjct: 142 NQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFMEVSSHAVVQQRIAG--LRFAGGI 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + I   HL      +    AK + F+ L++      N D+    ++   + A       
Sbjct: 200 FSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNGDEKNGSVMLQNTFAHK----K 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G    ADF+ +  +  S    M + ++G   EV    +G   A N+L   G   +L  
Sbjct: 256 TYGLKGVADFKAKIIE--SHFDGMLLNIEGH--EVWVKLVGEFNAYNILAVYGAAILLEQ 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +    + ALS     EGR +        G   ++D  Y   P ++   +S ++ +    E
Sbjct: 312 ETVKVLTALSQITGAEGRFEAITS--KNGVIGIVD--YAHTPDAVANVLSTINNLRKK-E 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEV 395
            + I VLG  C  G+  ++   ++AEV
Sbjct: 367 QQIITVLG--C-GGDRDKTKRPEMAEV 390


>gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A II ITG+ GKTT   ++    +  ++     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIGITGTNGKTTVTSLIGDMFNKSREN----GRLSGNIGFVASKVAQEVKTD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     RPHIA+IT +  AHL     +E   +AK  IFE   ++  
Sbjct: 161 --EYLVTELSSFQLLGIEHYRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDY 218

Query: 223 IFLN 226
           +  N
Sbjct: 219 LIFN 222


>gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
 gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
          Length = 493

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 151/368 (41%), Gaps = 38/368 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N IS +S+ I     F   KG  +D H+ +    ++GA + VV  ++         P   
Sbjct: 26  NYISSNSKDIQENTLFICRKGTSFDSHNIVDDLYKEGANVFVVEREI------RKYPYIQ 79

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V D   A + +A    ++   K     +TG+ GKTT+  +    + +     +  G+  N
Sbjct: 80  VVDSRIAESIIASMFYSKPYEKLITFGVTGTNGKTTSVHLFHHIMHNFGIKGSISGTVVN 139

Query: 146 HI---------GVPLT---LARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPHIAVI 189
            I           P     +  M   ++ G    GM   SH L + R  +  +R  I  I
Sbjct: 140 DIMGDKFYHPNTTPSAIEIMRNMHKTLENGGKYYGMEVSSHALSQYRVES--IRYDIVGI 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIY 248
           T I   HL      E    AK  I   L+  G   +N+     ELL+  K+    IK + 
Sbjct: 198 TNITRDHLDFHETFENYKKAKFHILNLLKPNGIAVVNH-----ELLQEVKNKNKNIKLV- 251

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           SFG   ++D+ + +       ++ ++       +V    IG + A N+ + +  ++ +  
Sbjct: 252 SFGVDSSSDYVIHEITTNWSGTFFKLDTPYGEKKVASQLIGEYNAFNITLVVAALAEIGY 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D+D  I +++ F   +GR +    A   G   ++D  +   P +++  I  L +++   +
Sbjct: 312 DIDEVIASVATFRGVDGRFEIIPEAKKLGIEIVVD--FAHTPDALEKVILSLRKLT---K 366

Query: 369 GRRIAVLG 376
           GR I V G
Sbjct: 367 GRLITVFG 374


>gi|49483980|ref|YP_041204.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425853|ref|ZP_05602277.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428520|ref|ZP_05604918.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431153|ref|ZP_05607530.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433835|ref|ZP_05610193.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436752|ref|ZP_05612796.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904309|ref|ZP_06312197.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906134|ref|ZP_06313989.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909051|ref|ZP_06316869.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911365|ref|ZP_06319167.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914534|ref|ZP_06322320.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919502|ref|ZP_06327237.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924880|ref|ZP_06332546.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958488|ref|ZP_06375939.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503612|ref|ZP_06667459.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293537169|ref|ZP_06671849.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428310|ref|ZP_06820939.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|56749227|sp|Q6GFW8|MURC_STAAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49242109|emb|CAG40809.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271547|gb|EEV03693.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275361|gb|EEV06848.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278101|gb|EEV08749.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281928|gb|EEV12065.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284103|gb|EEV14226.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313246|gb|EFB43642.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317312|gb|EFB47686.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321715|gb|EFB52040.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325060|gb|EFB55370.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327315|gb|EFB57610.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331426|gb|EFB60940.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595927|gb|EFC00891.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790637|gb|EFC29454.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920014|gb|EFD97082.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095278|gb|EFE25543.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295127710|gb|EFG57347.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315195646|gb|EFU26033.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G  ++ D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|297590727|ref|ZP_06949365.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|297575613|gb|EFH94329.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437804|gb|ADQ76875.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 444

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 89  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G  ++ D
Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 235

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 236 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378


>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 431

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D  +  ++ +  A+       I+AITG+ GKTT   ++   L+ + K+YA       +IG
Sbjct: 72  DKNIKIISDIEFASYFYKTKDIVAITGTNGKTTITTLVNEILNKVGKSYAV-----GNIG 126

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V + +  +  D  F + E     L  I        PH+AVIT I   HL     +E    
Sbjct: 127 VGV-MDVIDYDPKFIVCEASSFQLAYIDKF----HPHVAVITNITSDHLDWHKTVENYRK 181

Query: 209 AKAEIFEGLEKTGTIFL 225
           AK  I++ LE+   + L
Sbjct: 182 AKENIYKNLEEDDFLIL 198


>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
 gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
          Length = 498

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 40/323 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +++DSR   P   F A++G   DGH +I  A+Q+GA  +     +   I + + P  
Sbjct: 29  VTSLTMDSRKAGPGSLFIAVRGTVTDGHAYIETAIQQGATAI-----LCEEIPAETNPDV 83

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V  +   + + A     +   K  +I +TG+ GKT+   +L     ++      + 
Sbjct: 84  AYIRVQNSARTMGLVAANFYDQPSQKLKLIGVTGTNGKTSVATLLFRLFRALGYRCGLLS 143

Query: 142 SYNNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFL---TH-LVRPHIA------- 187
           +  N I    +P T     V     +    ++H     F+   +H +V+  IA       
Sbjct: 144 TVQNQIDDDVIPATHTTPDVITTNQLLTKMLAHGCTHVFMEVSSHAVVQERIAGLSFVGG 203

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALG 243
           + T I   HL      +    AK   F+ L  +     N DD       +   A+     
Sbjct: 204 IFTNITHDHLDFHGTFDNYIRAKKGFFDQLPASAFALTNVDDKRGLVMLQNTVARKETYS 263

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++T+ SF     AD            S   + +     EV    IG   A N+L   G  
Sbjct: 264 LQTLASFKGKILAD------------SLFGLNMLIDEREVWFKLIGQFNAYNLLSVYGTA 311

Query: 304 SILTADVDTAIKALSVFHPKEGR 326
            +L  D    +  LS   P  GR
Sbjct: 312 ILLGEDPTEVLTMLSGITPPPGR 334


>gi|282857260|ref|ZP_06266500.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
 gi|282584910|gb|EFB90238.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
          Length = 476

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 20/269 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  +++  L                I V   L  +  +   G+ E  ++
Sbjct: 116 IGVAGTHGKTTTTSLISYILEQ--------ADMQPTIAVGGELCDIGCNAKLGMGEYMVA 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L E         P  +V+T +   H++ +  ++ +  A        ++ G +FL  +D+
Sbjct: 168 ELDESDESFEYFHPLYSVVTNVDWDHVNQYPDLQAVIDAFGRFLRNTKEGGKLFLCGEDA 227

Query: 231 -FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGI 288
              ++++A  + L  + +Y FG+  + DF     +  C          +G+ M  +   I
Sbjct: 228 GVKKVIEALPNDLKNR-MYLFGRDPSFDFYAADIQYHCGGGLNYTFYAKGRKMGTIELVI 286

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESY 346
            G H   + L   G+   L    D   KA+ +FH  + R + R  C  N     L+ + Y
Sbjct: 287 SGEHNVLDSLAACGVAHELGVSFDIVQKAMRMFHGAKRRLQLRAMCPDN----ILVYDDY 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  ++A ++ +  + P    RRI ++
Sbjct: 343 GHHPREIEATLNAVRLMYPD---RRILLI 368


>gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 492

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV G D  L A    A+ A  R K  ++AITG+ GK+TT  ++   L     T    G 
Sbjct: 94  VPVIG-DIELFARALAAIPADARPK--VVAITGTNGKSTTTALIGWVLKQAGLTVHIGG- 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            N  IGV L L+    D  + + E+    L     LT    P +A++T I+P HL    G
Sbjct: 150 -NIGIGV-LALSAPTPDAVY-VVEVSSYQLD----LTTSFAPDVAILTNISPDHLDRHGG 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +E   +AKA +F+ +       +  DD +
Sbjct: 203 MEGYVAAKARLFQVMSPEKVALIGVDDDW 231


>gi|254362463|ref|ZP_04978571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica PHL213]
 gi|261493188|ref|ZP_05989717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496956|ref|ZP_05993323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153094055|gb|EDN74967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica PHL213]
 gi|261307392|gb|EEY08728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311151|gb|EEY12325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 433

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITGS GK+T   + T+     K+    +G   N IGVP+ L+ +  D D  +
Sbjct: 103 EAKAPIIAITGSNGKST---VTTLTTEMAKQAGIKVGMGGN-IGVPV-LSLLEGDYDLFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T+ ++   A +  I+  H+  +  I +   AK  I++  E    I 
Sbjct: 158 LELSSFQLE----TTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAE---NII 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           +N +D+    ++A      +K +  F + +NA++ LR
Sbjct: 211 VNGEDAQTYPIQA------VKKVIRFAE-QNAEYSLR 240


>gi|167465174|ref|ZP_02330263.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 342

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 129/318 (40%), Gaps = 32/318 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +   +  H +G D ++++      L   N ++VA+  + +IP+         L++  + A
Sbjct: 54  YLGHEASHVEGADLVVYST----ALPKDNVEIVAA-EARNIPI---------LHRSQMLA 99

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL ++   IA+ G+ GKTTT  M+ + +        C       IG  +           
Sbjct: 100 RLMNERKGIAVAGAHGKTTTSSMIALVMEK------CGADPTYIIGGEIMNIGSNAKAGT 153

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221
           G + +  +   +  FL +   P +A++  I   HL N+ G  E +  A A+    ++  G
Sbjct: 154 GEYVVAEADESDGTFLQYY--PTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD++   +     +     + ++G   +AD+Q         +    V  +G+++
Sbjct: 212 KAIVCKDDAYIREMIPYVES----EVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENL 267

Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +   + G H   N L TL I        D    A+  FH   G  +R++         
Sbjct: 268 GKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFH---GAKRRFQVMGEINDIL 324

Query: 341 LIDESYNANPASMKAAIS 358
           +ID+ Y  +P  + A IS
Sbjct: 325 IIDD-YAHHPTEISATIS 341


>gi|283471006|emb|CAQ50217.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G  ++ D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 84  PVFGVDDVLGA--LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           P+F   D  G      + +A RLR    A  +A+TG+ GKTTT +ML   L++     A 
Sbjct: 88  PLFAAADRAGVPVWGDVELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAA 147

Query: 140 IGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +G    +IGV L    L   P DV     EL    L         +R H A +  +AP H
Sbjct: 148 VG----NIGVSLLDAVLGEEPYDV--LAVELSSYQL----HWAPSLRAHSAAVLNLAPDH 197

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           L     +E  A+ K  I+EG  +   ++   D +  +L++      G + I
Sbjct: 198 LDWHGSMEAYAADKGRIYEG-NRVACVYNVADKATEDLVREADVEEGCRAI 247


>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
 gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
          Length = 477

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 9/149 (6%)

Query: 22  VPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +P   + GI+ D+R+ +     F  IKG  +DGHD     + KG   VV   D+      
Sbjct: 15  LPDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDAAQQMLDKGCAAVVCERDL-----G 69

Query: 81  LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           L   +  V D   A   L  A       +  +I +TG+ GKTT   ++   LS       
Sbjct: 70  LERQII-VTDTRAAFPMLCSAWFGHPERELELIGVTGTNGKTTITTVIKKVLSGFGFKVG 128

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            IG+  N IG  +          + +FEL
Sbjct: 129 LIGTCQNEIGDKIIPTARTTPEPYDLFEL 157


>gi|316984933|gb|EFV63889.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 506

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 147/367 (40%), Gaps = 44/367 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++       + E R   VL         ++    D  +VL+ 
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGA--YLEKR--LVLAFQPHRYTRTRDLFEDFTKVLNT 424

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V
Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484

Query: 448 VVKSSNS 454
           +   + S
Sbjct: 485 LNMGAGS 491


>gi|239637938|ref|ZP_04678899.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri
           L37603]
 gi|239596501|gb|EEQ79037.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri
           L37603]
          Length = 437

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  ++++  A  E+   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--DPDYAIMTNIDFDHPDYFKDVDDVFDAFQEMAHNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
               DD     L+A         IY +G ++  D   +  +   + S  +V + G+   +
Sbjct: 201 IAWGDDEHLRKLEADV------PIYYYGFNETDDVYAKNIQITEQGSQFDVYINGEFYGQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +VD   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQYGDHNILNTLAVVTISYLEKMNVDNIKEALETFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +      LS + H+ L
Sbjct: 311 DD-YAHHPREINATIETARKKYPQKEVIAVFQPHTFSRTQAFLEEFAT--SLSAADHVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 511

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+ A + H     P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73

Query: 63  KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A + +     +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTK 133

Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161
           GKTT    T+ ++  AL  +    + I    +       H+  P  L L RM    VD  
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S     +     +   I V   I+P H+S       E+  + K+EI +    
Sbjct: 194 MKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
              + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R
Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292


>gi|94989796|ref|YP_597896.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10270]
 gi|166224738|sp|Q1JIH1|MURC_STRPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94543304|gb|ABF33352.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10270]
          Length = 442

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  K  DF      + +  S  +V+ QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEKGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +D A+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Lens]
 gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Lens]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 178/436 (40%), Gaps = 51/436 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88
           +  D+R  AP  A F  + P     D  ++  Q    ++   TD++ S G +L  PV   
Sbjct: 30  VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLES 84

Query: 89  DDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
               GAL    +   AR  S A +IAITG+ GK+T    +T  +  + K      +   +
Sbjct: 85  ARQAGALIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG P L +       D  + EL    L     LT+ + P +A I  + P HL     +E 
Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AK  I+ G +    +  N +D +   +  +S    IK I SFGK   +   +  W  
Sbjct: 196 YTQAKQRIYRGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGKDAPS---MGNWGL 246

Query: 266 CSEQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +++       ME  L  +S+ +     G H   N L    +       +   +  L  
Sbjct: 247 IEQENTIYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKT 302

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R +  R     G+   I++S   N   + A IS ++ I    +G+ + + G   
Sbjct: 303 FPGLPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +  +  +     LA+ +S + +  + L G     ++ AL + + V  + +++G     ++
Sbjct: 357 KGADFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410

Query: 440 SLVDGDVVVVKSSNSC 455
               GDVV++  S +C
Sbjct: 411 CAKPGDVVLL--SPAC 424


>gi|103487367|ref|YP_616928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
 gi|118595694|sp|Q1GRX7|MURD_SPHAL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|98977444|gb|ABF53595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
          Length = 434

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 49/252 (19%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +   A A        ++ ITG+ GK+T   ++   L S        G    +IG+P
Sbjct: 93  VIGDIELFAEARSELPPHKVVGITGTNGKSTVTALIAHMLESAGVPVLMGG----NIGLP 148

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L R P+  + G++ L +S   +I  L H +   +AV+T I+P HL  + G E   ++K
Sbjct: 149 I-LTREPLP-EAGVYVLELSSF-QID-LAHSLACDVAVLTNISPDHLDRYDGFEGYVASK 204

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKS----HALGIKTIYSFGKSKNADFQLRKWKQC 266
           A +F    +     +  DD   +++ ++     H +  K I    +++            
Sbjct: 205 ARLFSLQHRDQVAIIATDDDPSKMIASRVNHRLHRVSAKDIDPVDQAR------------ 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP---- 322
               W  +Q             G H AQN +  +    +L  D +   + L+ F      
Sbjct: 253 ----WPALQ-------------GPHNAQNAVCAIAACRVLGLDDEAIERGLATFRSLPHR 295

Query: 323 ----KEGRGKRY 330
                E RG R+
Sbjct: 296 MELVGEARGARW 307


>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
 gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 152/378 (40%), Gaps = 55/378 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN +  DSR +   + F A KG + DGH ++  A+  GA  ++   +  +      I   
Sbjct: 17  VNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIIC--EGFSFDRKEGITYI 74

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML----TIA------LSSIK 134
            V D   AL  +A        +K  ++ +TG+ GKTT   +L    T A      LS++K
Sbjct: 75  RVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAGYKVGLLSTVK 134

Query: 135 -----KTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                K Y    +  + + +   L  M    V++   E+    + + R  T  ++    +
Sbjct: 135 ILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKR--TEGLQFSGGI 192

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGI 244
            T ++  HL       E  + K + F+ L K+     N DD       +  KAK ++  +
Sbjct: 193 FTNLSHDHLDYHKDFAEYRNVKKKFFDDLPKSAFALTNIDDKNGNYMLQNTKAKKYSYAL 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299
           KT+        ADF+ +          +E QL G      + EV    IG     N+   
Sbjct: 253 KTL--------ADFKAK---------ILEKQLSGTLISIDNTEVWTKLIGVFNIYNLTAI 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358
           +    +L  +    +  L++    E    R+   +++ G   ++D  Y   P ++K  + 
Sbjct: 296 IATAELLGLE---KLDILTIVSQLESVNGRFEYVVSEDGVTAIVD--YAHTPDALKNVLE 350

Query: 359 VLSQISPHGEGRRIAVLG 376
            ++ I  + E + I V+G
Sbjct: 351 TINDIRTNNE-KVITVVG 367


>gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
 gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1]
 gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 152/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGMGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +      L  K +  +G + +A  +    +    +    V+ +G+  + VV +
Sbjct: 218 DDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLID 343
             G H  QN L  + I + L    D AI +AL+ F+    R +RY    A   G +TLID
Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 513

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 156/385 (40%), Gaps = 56/385 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           +  +S+DSR    + AF A+KG   DG+ +I + + KG  L++  +D +    S++ P  
Sbjct: 23  IESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGTKLIL--SDKLPRQSSIATPSV 80

Query: 85  -------VFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                  +F V+++   L+ LA      +    II ITG+ GKT+    +      + + 
Sbjct: 81  AEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTNGKTSISSYIAQLQKLLDQK 140

Query: 137 YACIGSYNNHIGVPLTLA-RMPVDV--------DFG-----IFELGMSHLGEIRFLTHLV 182
              +G+  N I   L  +    +D+        D+      + E+    L + R  T  +
Sbjct: 141 SLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQNLVMEVSSHSLDQKR--TEGL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-- 240
              IAV + ++  HL     ++    AKA++F+  +      +N DD + + L   ++  
Sbjct: 199 DFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ-FKNLKKAVINIDDEYGQKLWENTNKS 257

Query: 241 ---------------ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                             I+ I    KSK AD  +      + Q+  ++ +  K +    
Sbjct: 258 SFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSIENMQTSFDLYISQKHIGTYQ 317

Query: 286 HGIGYHMAQNMLMTLGIVSILTADV---DTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
             +   + +  LM LG+      D    D  ++ +S   P +GR +    AL  G   +I
Sbjct: 318 TSL---VGEFNLMNLGLSLAALDDSSTRDQLLENISKLKPVKGRME--VIALVNGAKIII 372

Query: 343 DESYNANPASMKAAISVLSQISPHG 367
           D  Y   P +++ A+  L    P+ 
Sbjct: 373 D--YAHTPDALEKALQTLVNYHPNN 395


>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443038|gb|EDP20043.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 8/128 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +       I K Y   G    H+G  +  A +P+  +    ++ +
Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVSPEDVAV 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + ++    P+IAV+T + P HL +   ++E  +AK  I    ++     L Y++
Sbjct: 173 VELSSFQLISMHASPNIAVVTNVTPNHLDHHKDMQEYINAKRNILLYQKQPCRAVLGYEN 232

Query: 230 SFFELLKA 237
                ++A
Sbjct: 233 EISRSMQA 240


>gi|56964532|ref|YP_176263.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
 gi|59798127|sp|Q5WEA8|MURC_BACSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56910775|dbj|BAD65302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
          Length = 435

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 44/301 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA++GS GKT+T  +L   L S++ T   IG             +   +  + +FE  
Sbjct: 102 TSIAVSGSHGKTSTTGLLAHVLGSVEPTSYLIGD---------GTGKGAANSTYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P   V+T I   H   F  +E++ SA   + + + K   I   
Sbjct: 152 ------CEYRRHFLNYSPDYCVMTNIDFDHPDYFKSVEDVVSAFQTMAKQVNK--AIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + L+A      +  +Y +G   + DFQ +  K   E +  +  ++G      V 
Sbjct: 204 GDDEHLQTLQAN-----VPIVY-YGLGDHNDFQAKSIKNTPEGTAFDAWVRGDLFGSFVI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G G H  +N L  + +        +  ++ L  F   + R    R     G   LID+ 
Sbjct: 258 PGFGDHNVKNALSVIALCHYEGIGYEDIVEHLKTFAGVKRRFSEKRS----GKQILIDD- 312

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  + A I    +            PH   R    L +  E   LSQ+ H+ L ++
Sbjct: 313 YAHHPTEIAATIEATKKKYHDREVTAIFQPHTFTRTKTFLNEFAEA--LSQADHVYLCDI 370

Query: 396 L 396
            
Sbjct: 371 F 371


>gi|91977859|ref|YP_570518.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
 gi|123762580|sp|Q133X2|MURC_RHOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91684315|gb|ABE40617.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 121/299 (40%), Gaps = 36/299 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    IAI G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 100 LAELMRLKS---CIAIAGTHGKTTTTSMVAALLDAGDVDPTVINGGIINAYG---TNARL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E   S   +  FL   +   +AV+T + P HL +F   + +  A     E 
Sbjct: 154 GAG-DWMVVEADES---DGTFLK--LPADVAVVTNVDPEHLDHFKTFDAVQDAFRIFVEN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + L  K   +  + I ++G++  AD +L   K     S  +V  
Sbjct: 208 VPFYGFAVMCIDHPVVQALVGK---IEDRRIITYGENPQADARLLDLKPSGAGSTFKVAF 264

Query: 277 QGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +     H          G H A N +  + +   L    DT  KAL+ F    G  +R
Sbjct: 265 RDRKAGTAHEITDLMLPMPGPHNALNAVAAIAVAHELGLSDDTIRKALAAFG---GVRRR 321

Query: 330 YRCALNQGFFTLIDESYNANP----ASMKAA-----ISVLSQISPHGEGRRIAVLGDMC 379
           +         T+ID+ Y  +P    A +KAA       V++ + PH   R  ++  + C
Sbjct: 322 FTKTGEWNGVTIIDD-YGHHPVEIAAVLKAARQSTSAKVIAVVQPHRFTRLQSLFEEFC 379


>gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
           [Bifidobacterium bifidum PRL2010]
 gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 476

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           +AR    A  + ITG+ GKT+T EM +  L +       +G    +IG  ++ A +  D 
Sbjct: 94  SARTGRPAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVG----NIGKAVSHAAVDPDN 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D    EL    L      T  +    A IT IA  HL    GIE  A+ K+++F  + + 
Sbjct: 150 DALCVELSSFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRR- 204

Query: 221 GTIFLNYDDSFFELLKAKSH-ALGIKTI 247
             +  N DD     L + +H A G + I
Sbjct: 205 -ALVFNADDRRVSALASAAHTAEGCRRI 231


>gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
 gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
          Length = 452

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 20/160 (12%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
           ++A +IAITGS GK+T   ++  +A  + KK  +       ++G+P L L   PV  D  
Sbjct: 111 AQAPVIAITGSNGKSTVTVLVEAMARQAGKKVLS-----GGNLGLPALELLEKPVP-DLY 164

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L  +     A I  I+P H+  +  +E    AK  ++ G   TG +
Sbjct: 165 VLELSSFQLETTSTLNAVA----ACILNISPDHMDRYPNLEAYVQAKGRVYHG---TGAM 217

Query: 224 FLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            +N DD     L + + H L     ++ G     ++ LR+
Sbjct: 218 VINADDVQVAGLAQPERHCL----RFTLGAPAADEYGLRE 253


>gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 476

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           +AR    A  + ITG+ GKT+T EM +  L +       +G    +IG  ++ A +  D 
Sbjct: 94  SARTGRPAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVG----NIGKAVSHAAVDPDN 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D    EL    L      T  +    A IT IA  HL    GIE  A+ K+++F  + + 
Sbjct: 150 DALCVELSSFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRR- 204

Query: 221 GTIFLNYDDSFFELLKAKSH-ALGIKTI 247
             +  N DD     L + +H A G + I
Sbjct: 205 -ALVFNADDRRVSALASAAHTAEGCRRI 231


>gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetospirillum magneticum AMB-1]
 gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 478

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 152/369 (41%), Gaps = 32/369 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR++ P   F A+ G   DG  FI  A+  GA  V+       S   L   V 
Sbjct: 12  ITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAAGAVAVLAPE---GSRPDLPPEVV 68

Query: 87  GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
            V D      + A+ A          + A+TG+ GKT+T E     ++ +    A IG+ 
Sbjct: 69  LVTDA-NPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAAAAIGTL 127

Query: 143 ------YNNHIGVPLTLARMPVDVDFG-IFELGMSHL-------GEIRFLTHLVRPHIAV 188
                 ++N  G+  T     +  D   + E+G++H        G  +     VR   A 
Sbjct: 128 GITAPGWDNQGGL-TTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGVRLMAAA 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T +   HL   + +   A AK  +F E L +  T  +N D              GI T+
Sbjct: 187 FTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI-TV 245

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             FG++   D +L + +  +    +++++ G+++ +     G   A N L  LG+     
Sbjct: 246 LGFGRTAR-DLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACG 304

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           AD   A++AL       GR ++     N G    +D  Y   P +++   +VL  + PH 
Sbjct: 305 ADPVAALEALGHLDGVPGRLQQVASRAN-GAPIYVD--YAHTPDALE---TVLKALRPHA 358

Query: 368 EGRRIAVLG 376
             R +AV G
Sbjct: 359 ARRLVAVFG 367


>gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           avermitilis MA-4680]
 gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces avermitilis MA-4680]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 19/176 (10%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
           + A+     +PV+G          + +A RLR    A  +A+TG+ GKTTT +ML   L+
Sbjct: 84  LFAAAAEAGVPVWG---------DVELAWRLRGPGSAPWLAVTGTNGKTTTVQMLASILT 134

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +     A +G    +IGV L  A +  +  + +  + +S   ++ +   L R H A +  
Sbjct: 135 AAGLRTAAVG----NIGVSLLDAVLGEET-YDVLAVELSSY-QLHWAPSL-RAHSATVLN 187

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           IAP HL     +E   + K  I+EG  +   ++   D +  +L++A     G + +
Sbjct: 188 IAPDHLDWHGSMEAYTADKGRIYEG-NRVACVYNVADKATEDLVRAADVEEGCRAV 242


>gi|148265984|ref|YP_001232690.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
 gi|189028991|sp|A5G8J9|MURC_GEOUR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146399484|gb|ABQ28117.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
          Length = 458

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 134/337 (39%), Gaps = 50/337 (14%)

Query: 53  GHDFILHAVQKGAGLVVV---------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           G  FI HA +  A + VV         N ++V ++  L IPV    ++L  L ++     
Sbjct: 51  GEIFIGHARENVANVDVVVISSAVHDDNPEVVEAMERL-IPVIPRAEMLAELMRMKYG-- 107

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  IAI G+ GKTTT  M+   L+   I  T   IG   N IG    L +      
Sbjct: 108 -------IAIAGTHGKTTTTSMVATILAKGGIDPTI-VIGGRLNSIGTNARLGQ------ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G F +  +   +  FL   + P IAV+T I   HL  +  I+EI     +    +   G
Sbjct: 154 -GQFLVAEADESDGSFLK--LSPTIAVVTNIDADHLDFYKDIDEIKDTFVQFINKVPFYG 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L  D+       A    L  K   ++G S  ADF+    +     +      +G  +
Sbjct: 211 LAVLCLDNGNI----ADIIPLVKKRFNTYGLSTQADFRATDVRHTGFTTSFVAHYKGTLL 266

Query: 282 -EVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            E+     G H   N L T+ +   ++I  A++    KA        G G+R++      
Sbjct: 267 GEITFSMPGAHNVLNALATIAVAMELNIPFAEIQAGFKAFG------GVGRRFQVKGEVR 320

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              ++D+ Y  +P  ++A ++     +  G  RR+ V
Sbjct: 321 DIMVVDD-YGHHPTEIRATLAA----AKGGWDRRLVV 352


>gi|257456474|ref|ZP_05621670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
 gi|257446134|gb|EEV21181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 14/131 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-----ARMPVDV 160
           S A ++A+TGS GK++T   L   L       A +G   N    PLT      A  PV  
Sbjct: 113 SSAPVLAVTGSKGKSSTVSALYYGLQQCG-IPAFLG--GNITVSPLTFLTETRADTPV-- 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    LG++     L +P IA+IT I P H + +  +E   + K  I+   +K 
Sbjct: 168 ---VLELSSWQLGDLAHCPQL-KPKIALITHIMPDHQNWYGSMERYVADKKIIYRNQDKN 223

Query: 221 GTIFLNYDDSF 231
                NYDD +
Sbjct: 224 DYTICNYDDGW 234


>gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 511

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+ A + H     P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73

Query: 63  KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A + +     +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTK 133

Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161
           GKTT    T+ ++  AL  +    + I    +       H+  P  L L RM    VD  
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S     +     +   I V   I+P H+S       E+  + K+EI +    
Sbjct: 194 MKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
              + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R
Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292


>gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 477

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 37/342 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+    +IPV    D+LG          L + +T + I G+ GKT+T  M  +A+
Sbjct: 84  NPELVAA-REHNIPVIRRSDLLG---------ELMTGSTQVLIAGTHGKTSTTSMAVVAM 133

Query: 131 SS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            +  +  ++A IG   N  G   T A       F + E   S    +R+      P IAV
Sbjct: 134 QAAGMDPSFA-IGGQLNKAG---TNAHQGSGHCF-VAEADESDASLLRY-----SPDIAV 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGI 244
           +T I P HL  F   E       +    L  TG + +  DD    +  E  K K    G 
Sbjct: 184 VTNIEPDHLDFFHTPEAYFQVFDDFAARLTDTGVLVVCLDDEHAAALGERQKTKVTVRGY 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +  +  +  + + +    ++Q S   +++  + +EV     G HM  N    L   
Sbjct: 244 GSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAG 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID--ESYNANPASMKAAISV 359
            +   DV    + +S F    G  +R+    A+  G +  ++  + Y  +P  ++A ++ 
Sbjct: 304 VLAGGDVAALAQGISEF---SGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTA 360

Query: 360 LSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + ++  G G+ I V      M   +Q F  + AE LSL +
Sbjct: 361 AREKLAARGSGQVIVVF--QPHMYSRTQEFAAEFAEALSLAD 400


>gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
 gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
          Length = 512

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI +A+ +GA LV+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166


>gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 438

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPHVQPGDMVLL--SPAC 414


>gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
 gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 43/306 (14%)

Query: 94  ALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            +N+ A   +L R     IA++G+ GKTTT  ML+                +  I V   
Sbjct: 87  TINRAAFLGQLMREYKNSIAVSGTHGKTTTTSMLSTIFEH--------AELDPTILVGGN 138

Query: 153 LARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L  +  +V  G  +  ++   E    FL     P IA++  I   HL  FSGI+EI ++ 
Sbjct: 139 LKSIGGNVKIGHSDHFITEACEYVDSFLN--FNPKIAIVLNIEEDHLDYFSGIDEIKASF 196

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----QC 266
            +  + L   G   +N D+   ++L    H +  K I  FGK ++ D  +         C
Sbjct: 197 NKFGKLLPSDGYFVINGDNQNMDIL----HDVKAKAI-KFGKKESNDVIIENIAFDDLGC 251

Query: 267 S--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPK 323
              + ++M  +L G  + V     G H   N    + IVS+++  D++T  + +  +   
Sbjct: 252 GSFDLNYMGKKLTGFKLSVP----GLHNIYNATSAI-IVSLVSGIDLETVKEGIIDY--- 303

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAV 374
            G G+R+          +ID+ Y  +P  +KA +S   +           PH   R I++
Sbjct: 304 TGVGRRFERKGQYNGAAIIDD-YAHHPTEIKATLSTAKRFKKGTLWCVFQPHTYSRTISL 362

Query: 375 LGDMCE 380
           L +  E
Sbjct: 363 LDEFAE 368


>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|158512419|sp|A0Q5C2|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida U112]
 gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida Fx1]
          Length = 417

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 52/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLN----LAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK  Y+       ++Q+ +       +        K +++  
Sbjct: 202 VYD----------VHNNGIK--YA------GEYQIIRGAIYRNST--------KLLDIAE 235

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 236 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 290

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 291 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328


>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
 gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 54/291 (18%)

Query: 44  FAIKGPHYDGHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F +K P  + H  F+L   ++G                  IPV+          ++ +A 
Sbjct: 70  FVVKNPGINYHKPFVLRLKERG------------------IPVY---------TEIELAY 102

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-- 160
           RL      IAITG+ GKTTT  ++   L +  +     G+    +G PL+   +  D+  
Sbjct: 103 RLSQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGN----VGTPLSELVLNEDLLH 158

Query: 161 --DFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             D+ +  E+    L +I        P +A I  + P HL   + +EE  ++K  I+   
Sbjct: 159 KSDYDVVLEMSNFQLLDIDAF----HPRVATIINLTPDHLDYMASLEEYYTSKTRIYMNQ 214

Query: 218 EKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           +       N DD   +  L K    A     I SF   + AD  + K      Q    + 
Sbjct: 215 DHNDIYLQNKDDVVLKEYLQKYPPQA----KIVSFSLEQEADCMI-KNDAIYYQGQHIIN 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           L    +      +G H  QNM++ +        DV +    L+ F   E R
Sbjct: 270 LDDIKI------VGRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTGVEHR 314


>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 12/126 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIF 165
           A +  +TGS GKTTT    T  + +I K          +IG PL   + +M  D D  + 
Sbjct: 117 AKVYGVTGSDGKTTT----TTLIYNILKQQGYKTWVGGNIGTPLFTEIEKMKSD-DKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     +T  V P +AV+T ++P HL     ++E   +K  IF+  +    + L
Sbjct: 172 ELSSFQL-----MTMNVSPEVAVVTNLSPNHLDIHKDMQEYIDSKKNIFKYQQSESLLIL 226

Query: 226 NYDDSF 231
           N D++ 
Sbjct: 227 NRDNNL 232


>gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
 gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
          Length = 417

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 52/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK  Y+       ++Q+ +       +        K +++  
Sbjct: 202 VYD----------VHNNGIK--YA------GEYQIIRGAIYRNST--------KLLDIAE 235

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 236 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNDTTYI 290

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 291 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328


>gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
 gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
          Length = 567

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 23/251 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +PV 
Sbjct: 86  VTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGADRAAATGLPVL 145

Query: 87  GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D  G + +LA     R    +  + ITG+ GKTTT  ++   L    ++   +G+  
Sbjct: 146 AVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGLVGTVE 205

Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189
             IG     +    P   D       M   G +  +   V  H             +AV 
Sbjct: 206 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVAVF 264

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
             ++P H+   S +E+   AKA +F E   + G +  N+DD +   L AK  ++ + T  
Sbjct: 265 NNLSPEHMEFHSDMEDYFQAKARLFTERRARLGVV--NFDDEYGRRL-AKEASIPVVTFS 321

Query: 249 SFGKSKNADFQ 259
           + G    AD++
Sbjct: 322 AAGDPA-ADWR 331


>gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM
           12804]
 gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 51/372 (13%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G + + 
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTFV--------IGGRLTSAGANARLGQGEYIVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P +A++T I   H+  +   +  + SA  E  + L   G+  L  
Sbjct: 160 EADESDASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCA 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E++   S     + I ++G S +A  +    +    +    VQ Q ++  +   
Sbjct: 218 DDANVREIMPFVS-----RPITTYGLSPDAHVRGENVQADGTRMRFTVQRQDRATALPPL 272

Query: 287 GI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--------CA 333
            I     G H  +N L  + + + L    +   +AL+ F   +G G+R+          A
Sbjct: 273 AIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASF---KGVGRRFTQTGEFPVPAA 329

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G FTLID+ Y  +P  M A ++      P    RRI +             F  D  
Sbjct: 330 HGGGTFTLIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-DFV 384

Query: 394 EVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLV 442
            VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L   +   + 
Sbjct: 385 RVLGGADAVLLTEVYAAGEPPLVAADGRALARALRVAGRIEPVFVEDVADLPQAVLDFVR 444

Query: 443 DGDVVVVKSSNS 454
           DGDVVVV  + S
Sbjct: 445 DGDVVVVMGAGS 456


>gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC
           19718]
 gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 473

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 158/378 (41%), Gaps = 39/378 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   RLR     IAI G+ GKTTT  ++   L+   +    +      IG  L      
Sbjct: 98  LAELLRLRRG---IAIAGTHGKTTTTSLVASILAEAGQDPTFV------IGGKLKTVDSH 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
             +  G F +  +   +  FL   ++P + V+T I   H+S +      +     E  E 
Sbjct: 149 ARLGKGEFIVVEADESDASFL--YLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEH 206

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK--QCSEQSWME 273
           L   G   L  DD     + +    +  + + ++G  S++A       +  +C       
Sbjct: 207 LPFYGMAVLCVDDPHVREIIS----MITRPVTTYGIASEDAQICATNIRHDRCRMHFLAH 262

Query: 274 VQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY- 330
           + + G  +++EV  +  G H   N L  + + + L    +  +KAL+ F   + R ++Y 
Sbjct: 263 IGVNGSPRTLEVTLNLPGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYG 322

Query: 331 RCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              L +QG F LID+ Y  +PA + A ++      P   GRR+ VL         ++   
Sbjct: 323 EIPLPDQGSFALIDD-YGHHPAEIAATMAAARNAFP---GRRL-VLAFQPHRYSRTRDLF 377

Query: 390 IDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQ 438
            D   VLS  ++   + V+ +G   +   D  +L R+I V       Y E +D L   I 
Sbjct: 378 EDFVRVLSGADVLLLTEVYPAGEEPIIAADSKSLARAIRVQGKIEPIYIEQIDELKATIH 437

Query: 439 SSLVDGDVVVVKSSNSCG 456
           +   DGDV+++  + S G
Sbjct: 438 TIAQDGDVILIMGAGSIG 455


>gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
 gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
          Length = 460

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 116/299 (38%), Gaps = 33/299 (11%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138
           L +PV    ++L  L ++            IAI G+ GKTTT  M    L  + I  T  
Sbjct: 87  LHVPVIPRAEMLAELMRMKFG---------IAIAGTHGKTTTTSMAASILGHAGIDPTI- 136

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            IG   N IG    L +       G F L  +   +  FL  ++ P IAV+T I   HL 
Sbjct: 137 VIGGKLNAIGTNAQLGQ-------GKFLLAEADESDGSFL--VLSPTIAVVTNIDADHLD 187

Query: 199 NFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           ++S GIEEI     +    +   G   L  DD     +  +      K   ++G S  AD
Sbjct: 188 HYSGGIEEIKDTFVKFINKVPFYGMAVLCLDDPNIRAILPRVK----KRYMTYGLSSQAD 243

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            +    +     +      +G  + E+     G H   N +  + +   L        + 
Sbjct: 244 IRATHVRHDGFTTSFTAHFKGYRLGEISFTMPGAHNVLNAMACIAVALELDVPFSAIQEG 303

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            S F    G G+R+         T++D+ Y  +PA +KA ++      P  E R +AV 
Sbjct: 304 FSRFG---GVGRRFTIKGEPRGITVVDD-YGHHPAEIKATLAAARLGWP--ERRIVAVF 356


>gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           Bt4]
 gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis
           E264]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +      L  K +  +G + +A  +    +    +    V  +G+  + VV +
Sbjct: 218 DDPNVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY--RCALNQGFFTLID 343
             G H  QN L  + I + L    DTAI +AL+ F+    R +RY    A   G +TLID
Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADTAIQQALAEFNGVGRRFQRYGEMPAAGGGAYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +      GDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate
           ligase-like protein [polymorphum gilvum SL003B-26A1]
 gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 489

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 155/377 (41%), Gaps = 44/377 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SI 83
           V+G++ DSR + P   F A++G   DG  F+  A+++GA  V+ +    A++      S+
Sbjct: 21  VSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVAVLTDAQGAAALAGTMPDSV 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT---------------TKEMLTI 128
           PV    D   AL  +A     R   T++A+TG+ GKT+               +  + TI
Sbjct: 81  PVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHAGHASASLGTI 140

Query: 129 A-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184
             ++S  + Y  + +  + + +   LAR+    D GI    +   SH  E   L   VR 
Sbjct: 141 GTVTSRGRAYGGL-TTPDPVSLHAELARL---ADEGITHAALEASSHGLEQHRLDG-VRL 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
                T +   H+   +  E+   AK  +F   L   G++ ++  +   + + A +   G
Sbjct: 196 VAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAVARERG 255

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  I++ G+ + AD +L   +       + V+      ++     G     N L+  G+ 
Sbjct: 256 LH-IFTVGE-RGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAAGLA 313

Query: 304 SILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                     ++AL       GR    G++   AL       +D  Y   P +++ A++ 
Sbjct: 314 ITAGEATGAVLRALEDLEGAPGRLELVGRKANGAL-----VFVD--YAHKPDALENALAA 366

Query: 360 LSQISPHGEGRRIAVLG 376
           L    P   GR   V+G
Sbjct: 367 L---RPFTCGRLFVVIG 380


>gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
 gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
          Length = 487

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DLL        G+  Q  V    +DSR + P + F A+ G   DG DFI  A+  GA
Sbjct: 3   SLDDLLAPWMALDTGVEFQQLV----LDSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGA 58

Query: 66  GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTK 123
             V+ + D        + + V GV ++   L+ LA+ A    ++ T+I +TG+ GKTT  
Sbjct: 59  VAVLADADADGRQADRNGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVT 118

Query: 124 EMLTIALSSIKKTYACIGSYNN 145
           ++    L+++      +G+  N
Sbjct: 119 QLCAQLLTALGHQAGVMGTVGN 140


>gi|260655412|ref|ZP_05860900.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
 gi|260629860|gb|EEX48054.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
          Length = 461

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 20/269 (7%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  M++ IA  +  +    IG     IG    L    V V     EL  
Sbjct: 100 VGVAGTHGKTTTTSMISLIAERAGLEPTVAIGGELCDIGCNAKLGNGNVMV----AELDE 155

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +F     +P +AV+T +   H++ +   + +  A       +   G   L  DD
Sbjct: 156 SD-GSFQFF----QPSVAVVTNVDWDHVNYYPSRQSVVDAFVSFLANVPSDGFEVLCGDD 210

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHG 287
                L  +      +   ++G  K  DF     +Q      M   L   G+ +  V   
Sbjct: 211 PGVRALLGRLEGQNCQNRVTYGLEKGNDFYPTNLEQ-YPGGGMSYTLNRFGRQVGRVRLT 269

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           + G H   N L  L   S L    D  + AL+ FH   G  +R +   N G   L+ + Y
Sbjct: 270 VSGTHNLLNSLAALAAGSRLGISFDLMVSALNEFH---GVKRRLQQKGNAGDDILVYDDY 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  +KA ++ L Q+ P    RR+ V+
Sbjct: 327 GHHPNELKATLTALGQMFPK---RRLVVV 352


>gi|228970145|ref|NP_273471.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           MC58]
 gi|325199611|gb|ADY95066.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 147/377 (38%), Gaps = 64/377 (16%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330

Query: 339 FTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             L+ + Y  +P  M A +           ++    PH    R     D+ E        
Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPH----RYTRTRDLFE-------- 378

Query: 389 HIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFI 437
             D  +VL+  +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   +
Sbjct: 379 --DFTKVLNTVDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEML 436

Query: 438 QSSLVDGDVVVVKSSNS 454
            + L DGD+V+   + S
Sbjct: 437 LNVLQDGDIVLNMGAGS 453


>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3549]
          Length = 417

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 52/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK  Y+       ++Q+ +       +        K +++  
Sbjct: 202 VYD----------VHNNGIK--YA------GEYQIIRGAIYRNST--------KLLDIAE 235

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 236 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 290

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 291 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328


>gi|253732390|ref|ZP_04866555.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297207546|ref|ZP_06923982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300911629|ref|ZP_07129073.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|253723912|gb|EES92641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887882|gb|EFH26779.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300887050|gb|EFK82251.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 444

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 89  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 235

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 236 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378


>gi|25008816|sp|Q9K0Y1|MURC_NEIMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|7225646|gb|AAF40861.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis MC58]
 gi|325140938|gb|EGC63445.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           CU385]
 gi|325205492|gb|ADZ00945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M04-240196]
          Length = 469

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 147/377 (38%), Gaps = 64/377 (16%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           D      +  K      K   ++G    AD      +    Q    V +Q K     S E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           VV +  G H   N L  +G+   + A V+   K L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             L+ + Y  +P  M A +           ++    PH    R     D+ E        
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPH----RYTRTRDLFE-------- 379

Query: 389 HIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFI 437
             D  +VL+  +   ++ V+ +G   +A  D  AL R+I V       Y E +  L   +
Sbjct: 380 --DFTKVLNTVDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEML 437

Query: 438 QSSLVDGDVVVVKSSNS 454
            + L DGD+V+   + S
Sbjct: 438 LNVLQDGDIVLNMGAGS 454


>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
           influenzae F3031]
 gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3031]
          Length = 437

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 141/356 (39%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+    K G   LN +D
Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                              +FG+++N       + + S   W++ +  GK   +V   + 
Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 289 ---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N+L    +   +  ++D+   AL  F   +G   R++ A +    
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHHANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +    V L+ F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGVQLAKF-----------SSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri
           93-146]
 gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 491

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 158/396 (39%), Gaps = 77/396 (19%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T + A    +       IPV    ++L  L       R R     IAI G+
Sbjct: 81  RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M+    SSI   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 132 HGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGS 171

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +A++T I   H+  + G  E +          L   G 
Sbjct: 172 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281
             L  DD     L  +   +G + + ++G S++AD ++ +++QC  Q    +  Q +  +
Sbjct: 231 AVLCIDDPVIRELLPR---VG-RQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRL 286

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332
            V  +  G H A N      + S    D +  ++AL  F   +G G+R+           
Sbjct: 287 AVTLNAPGRHNALNAAAAAAVASEEGIDDEAILRALDRF---QGTGRRFDFLGEFSLQHV 343

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G   L+D+ Y  +P  + A I       P    RR+ ++         ++  + D 
Sbjct: 344 NNRPGRVMLVDD-YGHHPTEVDATIKAARAGWP---DRRLVMVFQPHRFTR-TRDLYDDF 398

Query: 393 AEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIH 423
           A VLS  ++     V+ +G H +   D  +L RSI 
Sbjct: 399 ANVLSQVDVLLMLDVYPAGEHPIPGADSRSLCRSIR 434


>gi|291559992|emb|CBL38792.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SSC/2]
          Length = 461

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 96/448 (21%), Positives = 174/448 (38%), Gaps = 78/448 (17%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLS------------- 82
           F+I G      D I H   KGA + +  T        D+V    +++             
Sbjct: 34  FSISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEEYKEAIRR 93

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV     +LG +        + +    IA++G+ GKTTT  ML+  L +        G
Sbjct: 94  NIPVMKRATLLGQM--------MHNYQNAIAVSGTHGKTTTTSMLSYILLA--------G 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199
           + +  I V   L  +  ++  G  E  ++   E    FL     P I++I  I   H+  
Sbjct: 138 NTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--PKISIILNIEEDHMDF 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKN 255
           F  +++I  +  E    L   G + +N +    D   + LKA+    G++       +KN
Sbjct: 196 FKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYATFGLENDSYDYCAKN 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314
             +           +  +   +G+ ++ +   + G H  +N L  +     +  DVDT  
Sbjct: 256 IGY------DAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMK 309

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365
           K L  F    G  +R+        FT++D+ Y  +P  ++A +                P
Sbjct: 310 KGLLGF---TGAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAKNYPHNELWCVFQP 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
           H   R IA L D  +   LS   H+ + ++ +    +    +G  +++ KD + R     
Sbjct: 366 HTYSRTIAFLDDFAKA--LSLCDHVIVTDIYA----AREKDTG--IVSSKDIVDRMADYD 417

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + VHY +  D +  FI  +    D+++ 
Sbjct: 418 VDVHYIKEFDDIEKFILKNCKKNDLLIT 445


>gi|255098853|gb|ACU00766.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bolletii]
          Length = 181

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP++ V+T I   HL +F   E  ++   E  E L   G + +  DD     L  ++H  
Sbjct: 2   RPNLIVVTNIEADHLDHFGSAEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHER 61

Query: 243 GIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMA 293
           GI+ +  +G +  A+        QLR W+     +  ++QL G+S          G HMA
Sbjct: 62  GIR-VRGYGSAGQAEAGGVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMA 120

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            N L  +   + + A VD  +  L+ F   EG  +R+
Sbjct: 121 LNALAAVVAAAEIGASVDDVLDGLAGF---EGVRRRF 154


>gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter litoralis HTCC2594]
 gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 495

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 38/371 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G +ID R +AP   F A +G   +G D+I  AV  GA  VV   +     G++ I   
Sbjct: 22  VSGFAIDHRKVAPGTVFGAFQGSAVNGEDYISQAVAAGAVAVVAQPEATVE-GAVHI--- 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
             D    A   LA         TI+A+TG+ GKT+T EM         +  A IG+    
Sbjct: 78  AEDTPRRAFALLAAQYFTPVPKTIVAVTGTNGKTSTVEMTRQLWRMAGERAASIGTLGVT 137

Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189
             +  +   LT    P  V F     G+   G++H+       G  ++    +    A  
Sbjct: 138 TPDESVSTGLT---TPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLPVAAAAF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL---NYDDSFFELLKAKSHALGIK 245
           T  +  HL     ++E   AK  +F E ++  GT  +   N + +   + +A+   L + 
Sbjct: 195 TNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVWTGNSEWTAQAIERARQRELRLF 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+   G+    D +LR          +E++  G++ ++    IG +   N L   G+   
Sbjct: 255 TVGEQGE----DIRLRARTPTQLGQELEIEHAGETRKLRLPLIGEYQVANALTAAGLAIA 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D       +S   P  GR +R       G    +D ++  +     A  + L+ + P
Sbjct: 311 TGTDPAAVWDGVSRLQPVRGRLERA-VITATGAPVYVDYAHTPD-----ALEAALAALRP 364

Query: 366 HGEGRRIAVLG 376
           H EGR + + G
Sbjct: 365 HVEGRLLCIFG 375


>gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
 gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
          Length = 483

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 152/382 (39%), Gaps = 58/382 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84
           + G+  DSR I P + F A  G   DG  FI  AV  GA  VV         G L  SIP
Sbjct: 20  ITGMQNDSRLIQPGDLFVAYPGSAADGRLFIAKAVSAGAVAVVYEPANFPIDGVLPTSIP 79

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+   L  +A A      +  TI  ITG+ GKTT    L  A   + +  A IG+
Sbjct: 80  CIAVPDLATKLAYIAKAFYDDPENSLTITGITGTNGKTTIAYQLAQAHHLLGQGAAYIGT 139

Query: 143 YNNHIGVPLTLARMPVD-----------VDFGIFELGMSHLGEIRFLTHLVRPHI----- 186
               IG        P+D           +     E G+  +  +   +H +  H      
Sbjct: 140 ----IGQGNVNELQPLDNTTPDSLRLQKLLHQYKEQGLKQVC-MEVSSHALAQHRVDALT 194

Query: 187 ---AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241
              A+ T +   HL     +E  A+AKA +F G E      +N DD + +++ A  K H 
Sbjct: 195 FKQAIFTNLTLDHLDYHHNMENYAAAKAILFSG-ESLQWAIINQDDEYQQVMAAALKPH- 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQ 294
             +K + ++G  ++ D +   W+         + + G  ++ VH   G H        A 
Sbjct: 253 --VKKL-TYGLREDCDVKAVNWR---------MDINGTEID-VHSPWGQHHLRIKALGAF 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+  +L + S L A      K ++V    +    R     +   + L+D  Y   P +++
Sbjct: 300 NIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVAS-APYVLVD--YAHTPDALE 356

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
            A+  L QI    +GR   V G
Sbjct: 357 NALVTLGQIK---KGRLWVVFG 375


>gi|315125604|ref|YP_004067607.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
 gi|315014117|gb|ADT67455.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
          Length = 469

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 28/264 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++    A + +  T+  IG   N  G    + +     DF I E  
Sbjct: 107 IAIAGTHGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL HL +P ++VIT I   H+  + G +E++     E    L   G   +  
Sbjct: 162 ES---DASFL-HL-QPMVSVITNIEEDHMETYGGSLEKMKDTYVEFIHNLPFYGLAVVCI 216

Query: 228 D-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVH 285
           D D   EL+         + + ++G+S  AD+++  + Q +      V   QG+S+    
Sbjct: 217 DSDVAAELIPRFG-----RPVITYGESHEADYRMSDFSQTANTCQFTVTNKQGESLTAKL 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTL 341
           +  G H A N    + +           + AL  F   EG G+R++        +G   L
Sbjct: 272 NMPGKHNALNATAAIAVAKDQNIANHAILAALDTF---EGIGRRFQHYGEFENERGSVML 328

Query: 342 IDESYNANPASMKAAISVLSQISP 365
           +D+ Y  +P+ + A I+   +  P
Sbjct: 329 VDD-YGHHPSEVAATITAAREGWP 351


>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +       I K Y   G    H+G  +  A +P+  +    ++ +
Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVSPEDVAV 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + ++    P+IAV+T + P HL +   ++E   AK  I    ++     L Y++
Sbjct: 173 VELSSFQLISMHASPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232

Query: 230 SFFELLKA 237
                ++A
Sbjct: 233 EISRSMQA 240


>gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
 gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
          Length = 512

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI +A+ +GA LV+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVMGTTGN 166


>gi|269122825|ref|YP_003305402.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314151|gb|ACZ00525.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 149/379 (39%), Gaps = 58/379 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPL-----TLARMPVDVDF 162
           IIA TG+ GKTTT            KTY  +    +N  +G  +      + +   ++D+
Sbjct: 92  IIAFTGTNGKTTT----------CTKTYEMLKKAGFNVELGGNVGRSFAEIVKENKELDY 141

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L         ++P+I+ I  + P HL  +  +E+    K  IF   +K   
Sbjct: 142 IVLELSSYQLEN----NPKIKPYISGIINLTPDHLGRYKDVEDYYMTKFNIFSNQDKKDR 197

Query: 223 IFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEV 274
           + +N DD+ F  L  K+  L      K +Y    +K + F    Q+   K  SE    + 
Sbjct: 198 MIVNVDDATFLNLYNKAKELENYRNPKRVYISTNNKGSIFVKNGQIYVMKDLSEMYNSKF 257

Query: 275 QLQ---GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            L     K ++V    + G H  +NML  +    I           L      E R + +
Sbjct: 258 SLSQSADKLIDVKDIALKGEHNLENMLFLIATAKICGVPNKVIRNFLKEVKSIEHRMEDF 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQ---ISPHGEGRRIAVLGDMCEMGELSQS 387
               N  F   I++S   N AS K AI+       +   GE +++ +     E+G+    
Sbjct: 318 FKKSNTVF---INDSKGTNVASTKKAIASYENDVILICGGEDKKVPLYELGKEIGK---- 370

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL-VDG 444
                        I   ++ G +   +++ L +  +  YS  ET+D   + I+ ++  + 
Sbjct: 371 ------------KIKFTYIYGENRYLIENELKKVGYSKYSIFETVDECIMDIKDNVNFEE 418

Query: 445 DVVVVKSSNSCGFYRLINL 463
           D+ ++ S  +  F +  N 
Sbjct: 419 DITILYSPATSSFDQFKNF 437


>gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
 gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
          Length = 493

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 153/387 (39%), Gaps = 63/387 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+++DSR++ P   F A+ G    G +FI +A++ GA  V+ + +  A I        
Sbjct: 23  ITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGASAVLTDVEG-AKI-------- 73

Query: 87  GVDDVL-GALNKLAVAARLRSKA-------------TIIAITGSVGKTTTKEMLTIALSS 132
             DDVL G+   L VA   R                T++ +TG+ GKT+         S+
Sbjct: 74  -ADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSVATFTRQIWSA 132

Query: 133 IKKTYACIGSYN----------NHIGVPLTLARMPVDVDFGIFEL----GMSHLGEIRFL 178
           +      IG+            +    P+TL R+  D              SH  + R L
Sbjct: 133 LGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEASSHGLDQRRL 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDD---SFFEL 234
              VR   A  T     HL      +   +AKA +F   L   GT  +N +D   +   L
Sbjct: 193 DG-VRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLNDPRGAEIAL 251

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L A+      + + S G  K  D Q+   +  +    +    QG+  +V  + IG   A+
Sbjct: 252 LAAERG----QRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLIGGFQAE 307

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFH--PK-EG-RGKRYRCALNQ-GFFTLIDESYNAN 349
           N+ +  G+       + +   A  VF   P+ EG RG+    A  + G    +D  Y   
Sbjct: 308 NVALAAGLA------IGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVD--YAHT 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P ++  A+  L    PH  GR + V G
Sbjct: 360 PDAIATALKAL---RPHVMGRIVVVFG 383


>gi|253734476|ref|ZP_04868641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253727530|gb|EES96259.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|320141683|gb|EFW33518.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143768|gb|EFW35542.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 444

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 89  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 235

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 236 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378


>gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
 gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
          Length = 1288

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 37/309 (11%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA------ITGSVGKTTTKEMLTIALS 131
           I S +IP   V+        L V +R R+ A +IA      + GS GK+T   ML   LS
Sbjct: 69  IASPAIPETHVERRAARRAGLPVKSRARALAEVIADRQTICVAGSHGKSTVTAMLIHILS 128

Query: 132 SIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +  +    Y    ++ +   +P  L     D  F + E   +H     +     +P +A+
Sbjct: 129 AAGQEDFGYMLGAAFADAARLPARLGA--PDAPF-VTEACEAHGALAAW-----QPSLAI 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLK-AKSHALGIKT 246
           +T +   H  ++ G+  +  A A+    L   G      DD    +LL+ A+  AL    
Sbjct: 181 LTNLDDEHADHYGGLPGLRRAVADFLSRLPPEGRAVACGDDPQVLDLLRRARCAAL---- 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
            Y  G    AD  LR     +      V L G  +  +   + G H  +N L  LG+   
Sbjct: 237 TYGLG----ADNDLRAVPDGT--GGATVFLNGTDLGRLSLIVPGRHNLRNALAALGMALT 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     TA  AL+ F    G  +R +         L D+ +  +PA ++AA++VL + + 
Sbjct: 291 LGIGFATAAGALADF---PGLARRLQPVAPGNRLRLFDD-FAHHPAEIEAALAVLRETT- 345

Query: 366 HGEGRRIAV 374
             EGR IA+
Sbjct: 346 --EGRLIAI 352


>gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           frigidimarina NCIMB 400]
 gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 35/257 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-----SL 81
           VNG+++DSR +     F A+ G   DG  FI  A+  GA  ++++TD     G       
Sbjct: 19  VNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGATAILIHTDNPDEHGIVDRLQY 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++P+     +   L+ +A    L +    ++I ITG+ GKT+  +++   +  +    A 
Sbjct: 79  TVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGKTSVSQIIAQIVYLLGHQAAV 138

Query: 140 IGSYNNHIGVPL------TLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPH------- 185
           +G+  N +   L      T   + V      F    + L  +   +H LV+         
Sbjct: 139 MGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELCAMEVSSHGLVQGRVEAAPFE 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGI 244
           IAV T ++  HL     ++  A+AK  +F+    K G I  N DD           A+G 
Sbjct: 199 IAVFTNLSRDHLDYHGDMDSYAAAKKRLFKFPSIKHGVI--NIDD-----------AVGA 245

Query: 245 KTIYSFGKSKNADFQLR 261
           K +      +N  F ++
Sbjct: 246 KWLTELASDQNKSFSIK 262


>gi|15924730|ref|NP_372264.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927317|ref|NP_374850.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283412|ref|NP_646500.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486565|ref|YP_043786.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|148268218|ref|YP_001247161.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394286|ref|YP_001316961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980057|ref|YP_001442316.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|255006526|ref|ZP_05145127.2| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794123|ref|ZP_05643102.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|258415827|ref|ZP_05682098.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|258420656|ref|ZP_05683595.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|258438306|ref|ZP_05689590.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|258443764|ref|ZP_05692103.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|258445975|ref|ZP_05694151.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|258448298|ref|ZP_05696425.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|258454175|ref|ZP_05702146.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|269203378|ref|YP_003282647.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893234|ref|ZP_06301468.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|282927869|ref|ZP_06335480.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|295406051|ref|ZP_06815859.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|296276768|ref|ZP_06859275.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245024|ref|ZP_06928901.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|54037858|sp|P65475|MURC_STAAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54037859|sp|P65476|MURC_STAAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041508|sp|P65474|MURC_STAAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56749192|sp|Q6G8I7|MURC_STAAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224735|sp|A7X3H5|MURC_STAA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082503|sp|A6U2K6|MURC_STAA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082504|sp|A5ITR2|MURC_STAA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13701535|dbj|BAB42829.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247512|dbj|BAB57902.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204853|dbj|BAB95548.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49245008|emb|CAG43469.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741287|gb|ABQ49585.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946738|gb|ABR52674.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722192|dbj|BAF78609.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257788095|gb|EEV26435.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|257839420|gb|EEV63893.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|257843260|gb|EEV67670.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|257848350|gb|EEV72341.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|257851170|gb|EEV75113.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|257855217|gb|EEV78156.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|257858537|gb|EEV81413.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|257863627|gb|EEV86384.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|262075668|gb|ACY11641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590379|gb|EFB95458.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|282764552|gb|EFC04678.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|285817422|gb|ADC37909.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus
           04-02981]
 gi|294969048|gb|EFG45069.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|297178104|gb|EFH37352.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|302333404|gb|ADL23597.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|312830118|emb|CBX34960.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130621|gb|EFT86607.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727526|gb|EGG63982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329733180|gb|EGG69517.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 437

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
 gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 161/392 (41%), Gaps = 44/392 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129
           N +++ ++G   IP+    ++LG L        +++  T IA++G+ GKTTT  M++ + 
Sbjct: 83  NPELMEAVGK-KIPMLTRAELLGQL--------MKNYDTPIAVSGTHGKTTTTSMISEVL 133

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L++       +G     IG  + + +       G F   ++   E         P I+VI
Sbjct: 134 LAADMDPTISVGGILKTIGGNIRVGKS------GNF---ITEACEYTNSFLHFYPKISVI 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   HL  F  +E+I  +  +    L   GT+ +N D   ++ +      L    I +
Sbjct: 185 LNIEEDHLDFFKDLEDIRHSFHQFSALLPSDGTLIINGDIKDYQEIY---EGLDCNVI-T 240

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306
           +G S   D+   +  Q  E+ ++  +L     S   V   + G H   N L  +    +L
Sbjct: 241 YGSSAEFDYSATEI-QYDEKGFVSFELLKHNTSCGRVQLSVTGDHNVSNALAAIATAELL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAI----- 357
              +DT  K L  F    G  +R+         T++D+ Y  +P    A++KAA      
Sbjct: 300 GIPMDTIRKGLLSF---SGTDRRFEYKGTFNGVTVVDD-YAHHPTEIAATLKAAQHYPHN 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +     PH   R  A   +  E   LS + H+ LA++ +      + +S   +   K+A
Sbjct: 356 EIWCVFQPHTYTRTKAFFHEFAEA--LSHTDHLVLADIYAARETDTLGISSSDL--AKEA 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  HY  +   +  F++ +   GD+++ 
Sbjct: 412 AKLGTDTHYYPSFAEIEAFLKENCKSGDLLIT 443


>gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 39/262 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHDF   AV+ GA  ++    +      + +PV 
Sbjct: 23  ITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPL-----DVDVPVI 77

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA A   +   +  +I +TG+ GKTTT  ++   +    K    IG+ +
Sbjct: 78  VVRDSRRAMAVLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVH 137

Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMS--HLGEIRFLTHLVRPHI 186
             IG               +  T  +M  + VD  I E+     H+G +    H     +
Sbjct: 138 IKIGDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGRV----HGCDYDV 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSH 240
           AV T +   HL     +EE  +AK  +F  L      E+     LN DD   +  K  + 
Sbjct: 194 AVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQYYKHMTA 253

Query: 241 ALGIKTIYSFGKSKNADFQLRK 262
           A    T+ ++G   ++D   ++
Sbjct: 254 A----TVITYGTKTDSDIMAKR 271


>gi|167766034|ref|ZP_02438087.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
 gi|167712114|gb|EDS22693.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 96/448 (21%), Positives = 174/448 (38%), Gaps = 78/448 (17%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLS------------- 82
           F+I G      D I H   KGA + +  T        D+V    +++             
Sbjct: 36  FSISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEEYKEAIRR 95

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV     +LG +        + +    IA++G+ GKTTT  ML+  L +        G
Sbjct: 96  NIPVMKRATLLGQM--------MHNYQNAIAVSGTHGKTTTTSMLSYILLA--------G 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199
           + +  I V   L  +  ++  G  E  ++   E    FL     P I++I  I   H+  
Sbjct: 140 NTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--PKISIILNIEEDHMDF 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKN 255
           F  +++I  +  E    L   G + +N +    D   + LKA+    G++       +KN
Sbjct: 198 FKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYATFGLENDSYDYCAKN 257

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314
             +           +  +   +G+ ++ +   + G H  +N L  +     +  DVDT  
Sbjct: 258 IGY------DAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMK 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365
           K L  F    G  +R+        FT++D+ Y  +P  ++A +                P
Sbjct: 312 KGLLGF---TGAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAKNYPHNELWCVFQP 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
           H   R IA L D  +   LS   H+ + ++ +    +    +G  +++ KD + R     
Sbjct: 368 HTYSRTIAFLDDFAKA--LSLCDHVIVTDIYA----AREKDTG--IVSSKDIVDRMADYD 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + VHY +  D +  FI  +    D+++ 
Sbjct: 420 VDVHYIKEFDDIEKFILKNCKKNDLLIT 447


>gi|148826251|ref|YP_001291004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
 gi|166224762|sp|A5UCX0|MURD_HAEIE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148716411|gb|ABQ98621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 138/356 (38%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+   E      LN +D
Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAE---VGVLNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                              +FG+ +N   Q   + + S   W++ +  GK   +V   + 
Sbjct: 215 KL-----------------TFGEGENQARQTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 289 ---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N+L    +   +  ++D    AL  F   +G   R++ A      
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAVGINLDAIRTALRHF---KGLDHRFQLAHQANGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA+S L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALSGL-----YVEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  I + +     +LA       S   +  ETM+    F++ +L  GD+V++
Sbjct: 366 -------ICYCFGRDGALLA-----KLSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|57652038|ref|YP_186623.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87159924|ref|YP_494380.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195554|ref|YP_500360.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221845|ref|YP_001332667.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161509957|ref|YP_001575616.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|258424154|ref|ZP_05687036.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|258452291|ref|ZP_05700304.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|262049049|ref|ZP_06021927.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|262051815|ref|ZP_06024032.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|282925627|ref|ZP_06333276.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|284024787|ref|ZP_06379185.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849901|ref|ZP_06790640.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|68565674|sp|Q5HF34|MURC_STAAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892742|sp|Q2FFZ8|MURC_STAA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122539287|sp|Q2FXJ0|MURC_STAA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|172048949|sp|A6QHS3|MURC_STAAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082505|sp|A8Z4G7|MURC_STAAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|57286224|gb|AAW38318.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87125898|gb|ABD20412.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203112|gb|ABD30922.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374645|dbj|BAF67905.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368766|gb|ABX29737.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257845775|gb|EEV69807.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|257860016|gb|EEV82851.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|259160309|gb|EEW45336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|259162866|gb|EEW47430.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|282592407|gb|EFB97421.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|294823240|gb|EFG39670.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|315197209|gb|EFU27548.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|329726994|gb|EGG63451.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|323439606|gb|EGA97326.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O11]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 511

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+ A + H     P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73

Query: 63  KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A + +     +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTK 133

Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161
           GKTT    T+ ++  AL  +    + I    +       H+  P  L L RM    VD  
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S     +     +   I V   I+P H+S       E+  + K+EI +    
Sbjct: 194 MKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
              + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R
Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292


>gi|253315887|ref|ZP_04839100.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
          Length = 429

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 500

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 157/381 (41%), Gaps = 50/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR + P   F AI+G  YDGH FI  AV +GA  VV    +        +P  
Sbjct: 24  IQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAVARGAAAVVGERPLALE----GVPYV 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL  LA A      A+++ +  TG+ GKTTT  ++   L +       IG+ +
Sbjct: 80  QVPSSRLALGLLASAFYGHPSASLVMVGVTGTNGKTTTTHLIRWVLEAGGHPTGLIGTVH 139

Query: 145 NHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRP----------------HI 186
           N I G  L + R  P   D       M   G    +TH V                   +
Sbjct: 140 NIIAGRSLPVERTTPEAADLQKLLAAMRDEG----MTHAVMEVSSHALALQRVAGCAFDV 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI-------FLNYDDSFFELLK 236
            V T +   HL   + +E+ A+AKA +F  L   E  GT         +N DD + E + 
Sbjct: 196 GVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGTTKPGPKAAVINADDPWGEFMA 255

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A+S+A     + ++G ++ AD   R+ + +     ++ V  +G++  V     G     N
Sbjct: 256 ARSNA----PVVTYGLNRPADITARQVEVEPGGIRFILVSPKGEA-PVRLRLTGRFNVYN 310

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L   G    L  D  T  + L       GR +  R    Q F  ++D  Y   P  +  
Sbjct: 311 ALAAAGAGLALGLDPATVARGLESLQAVPGRLE--RIDRGQPFAVIVD--YAHTPDGLDN 366

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +  + +++  G+GR I V G
Sbjct: 367 VLRSVRELA--GQGRVICVFG 385


>gi|167752866|ref|ZP_02424993.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
 gi|167659935|gb|EDS04065.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
          Length = 450

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 67/159 (42%), Gaps = 25/159 (15%)

Query: 49  PHYDGH---DFILHA--VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           P+ +GH   + IL A  V K  G +     M+  +    IPV         ++++  A R
Sbjct: 49  PYEEGHHSEERILAADEVVKSPG-IPDKAPMIVKLREAGIPV---------ISEMEFAGR 98

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              KA  I +TGS GKTTT  ++   L       A  G    +IG     +    D D+ 
Sbjct: 99  YLGKARTICVTGSNGKTTTTSLIYKILRDAGYNVALGG----NIGESFAYSVATGDYDWY 154

Query: 164 IFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + EL    L G  RF     R HI V+T I P HL  + 
Sbjct: 155 VLELSSFQLDGMFRF-----RAHIGVLTNITPDHLDRYD 188


>gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 86-028NP]
 gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           influenzae 86-028NP]
 gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2846]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+   E      LN +D
Sbjct: 162 FQLE----TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAE---VGVLNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                              +FG+ +N   Q   + + S   W++ +  GK   +V     
Sbjct: 215 KL-----------------TFGEGENQARQTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D+   AL  F   +G   R++        
Sbjct: 257 LPCEEVTLVGRHNYMNILAATALAQAVGINLDSIRTALRHF---KGLDHRFQLVHQANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +    V L+ F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGVQLAKF-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           ++   ++A+TG+ GK+TT  +L   L+      A  G+        L L  +P D  + +
Sbjct: 107 KAGTRMLAVTGTNGKSTTTTLLAHVLAECGLPVAAGGNLGT---AALDLPELPGDGRY-V 162

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     LTH ++   A++  I P HL    G+    +AK  +F+ L   G   
Sbjct: 163 LELSSYQL----ELTHSLKLGAAILLNITPDHLGRHGGMNGYIAAKRRVFDFLTPGGAAV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTI 247
           +  DD     + A+    G++ +
Sbjct: 219 IGVDDGPCRAIAAELERRGLRVV 241


>gi|298695008|gb|ADI98230.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 417

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 62  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 112

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 113 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 156

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 157 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 208

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 209 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 268

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 269 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 323

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 324 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 351


>gi|219684934|ref|ZP_03539875.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr]
 gi|219671672|gb|EED28728.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 25/184 (13%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139
           L+IP+    +VLG L++         K   I I GS GKTTT   L I    +       
Sbjct: 96  LNIPILSYPEVLGELSR---------KHYSIGIAGSHGKTTTTAFLGILFDKLGLNPNVI 146

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197
           +GS     G   T+A        GI ++ +    E +   H +   P++ ++T +   H+
Sbjct: 147 VGSSVKDFGDNSTIA--------GISDIFIVETCEYK--KHFLHFSPNMLILTNVDYEHV 196

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNA 256
             F   E +  A  +    L+K G + +N DD    LLK KS        I+SFG    +
Sbjct: 197 DFFKNYEALEDAFLQYINNLKKNGILIINSDDK--NLLKIKSQINREDINIFSFGSRDLS 254

Query: 257 DFQL 260
           +FQ+
Sbjct: 255 NFQI 258


>gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sibiricum 255-15]
 gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium
           sibiricum 255-15]
          Length = 449

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           +KA  +AITGS GKTTT  ++   L    K     G    +IG P + +A+     D  +
Sbjct: 108 TKADWVAITGSNGKTTTTTLVHELLKRGSKRVHLAG----NIGFPAVEVAQQAEAGDVIV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P  A    ++PAHL     +   A+AKA IF  +++ G + 
Sbjct: 164 IELSSFQLMGIESFC----PVSAAFLNLSPAHLDYHGDVTSYAAAKARIFSNMDEAGRLV 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS 249
           +N DD   E+++    A   +  +S
Sbjct: 220 VNADDE--EVMRLSETAAAERLTFS 242


>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 503

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 152/398 (38%), Gaps = 42/398 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           +  +  DSR I P   F  + G H DGHD+   A++ GA  +V   ++    G+++ I V
Sbjct: 23  ITNLETDSREIRPGGVFVCVPGFHVDGHDYAEQAIRNGAVAIVAERELSGLPGNVTHITV 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                +L  L         R +  +I ITG+ GKTTT  M+   L+  ++    IG+   
Sbjct: 83  PDTRRILPILANAFFGDPTR-QLKLIGITGTNGKTTTTHMVDQILNDARRKTGIIGTLYM 141

Query: 146 HIG--VPLTLARMPVDV--------------DFGIFELGMSH---LGEIRFLTHLVRPHI 186
            IG  V  TL   P  +              ++G+ E+  SH   +G +R          
Sbjct: 142 KIGNHVEKTLNTTPDTIQLMRYFHTIISHGGEYGVLEVS-SHGLDMGRVRGCDF----QT 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIFLNYDDSFFELLKAKSHA 241
            V T ++  HL     +E   + K  +F  L  +         LN DD+       ++ A
Sbjct: 197 VVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNRDMQKKAVLNADDAASSYYAKRTSA 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I ++G    AD +  +     E      +    S +V     G H   N L  + 
Sbjct: 257 ----QIITYGIQNQADVRATQIHHSREGCVFHAETPWGSSDVNLKVHGAHNIYNALAAMT 312

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +    ++    +L  F    GR +  +    + F  ++D  Y  NP  +KA +    
Sbjct: 313 TCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTG--RRFGVVVD--YAHNPDGLKATLQSAK 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            I+    G+ I V+G   E     +    D+A   S Y
Sbjct: 369 AIT---SGKMICVMGCRGERDRSKRPIMADIAASYSDY 403


>gi|323441520|gb|EGA99172.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O46]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVPNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|320161741|ref|YP_004174966.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319995595|dbj|BAJ64366.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 461

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 44/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +IA+ G+ GKTTT  M+   LSS+ +  + I      IG    +  +  +   G  +
Sbjct: 100 KYRVIAVAGTHGKTTTTGMIAWMLSSLAQNPSYI------IGG--VVRDLHTNAHAGKSD 151

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L +    E   +   + PHIAVIT +   H   F  + + + A  +    ++  G + +N
Sbjct: 152 LFVIEADEYDRMFLGLHPHIAVITYLEHDHPDCFPTMADYSGAFEDFIRQIQAGGILLVN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-----KWKQCSEQSWMEVQLQGKSM 281
            D      L  ++   G+K + ++G+S++  + L+     +W   S   W ++   G++ 
Sbjct: 212 GDHPPTRAL-GQATPKGVK-VMTYGESEHNTYFLKHASVNRWGGFSADVWKQMP-DGENR 268

Query: 282 EVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++H  +   G H   N L  L +   L   +  A +AL +FH   G G+R+        
Sbjct: 269 RLLHLALQVPGKHNLLNALAALAVADQLGLMLSPAAEALHLFH---GTGRRFEVRGEANG 325

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            TLID+ Y  +P  ++  ++          + +   PH   R  A++ + C      QSF
Sbjct: 326 VTLIDD-YAHHPTEIRTTLAAARARYPERHIWAVWQPHTYSRTQALMEEFC------QSF 378

Query: 389 H-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              D   VL +Y  +     GF    + + +     V +  T++    ++ + L  GDVV
Sbjct: 379 EDADAVVVLEIY-AAREKNPGFSAREVVNRMKHPAAV-FQPTLETAQEYLLNCLQPGDVV 436

Query: 448 VVKSSNSCGFY--RLINLL 464
           +V S+        RL+++L
Sbjct: 437 LVLSAGDADALNARLLDVL 455


>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
           MP688]
 gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           MP688]
          Length = 460

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%)

Query: 102 ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A+ R +++ +IAITG+ GKTT    +T  +  + K          +IG+P+  A   V+ 
Sbjct: 103 AQFRPRSSKVIAITGANGKTT----VTTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVET 158

Query: 161 DFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           D G  ++ +  L   +   T  + P  A +  +   H+  + G+ E A+AKA I +G   
Sbjct: 159 D-GAPDVYVLELSSFQLETTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARILKG--- 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            G   LN +D++      ++ AL  + + +FG
Sbjct: 215 AGVQVLNREDAW-----CRNMALPDQPVVTFG 241


>gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 476

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 148/358 (41%), Gaps = 55/358 (15%)

Query: 96  NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY 143
           N++ V  R       +R K+T+ A+ G+ GKTTT  M+   L +  I  T      I SY
Sbjct: 90  NRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINSY 148

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            ++       AR+  D D+ + E   S    +R    L     A++T I P HL ++   
Sbjct: 149 GSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AIVTNIDPEHLDHYGSF 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++  A  E    +   G  FL  D    + +  +   +  + + ++G S  AD +    
Sbjct: 196 EKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSILPR---IRDRRLITYGFSAQADIRAVDI 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIK-A 316
              S  +     ++G+  ++     I     G H  QN L  +G V++  +  D AI+  
Sbjct: 253 TPISGGNRFTAVIRGRDGDIRRIENIFLPMPGRHNIQNALSAIG-VALEFSIPDAAIRDG 311

Query: 317 LSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPH 366
            + F   + R  R     +  G   +ID+ Y  +P  +KA +S         V++ + PH
Sbjct: 312 FARFGGVKRRFSRVGEIKIGDGSVLVIDD-YGHHPVEIKAVLSAARESAQQRVIAVVQPH 370

Query: 367 GEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               R + L D+  M E   +F+  D+  V  +Y      ++G    AL   L +  H
Sbjct: 371 ----RFSRLHDL--MTEFQSAFNDADMVFVAPVYAAGEQPIAGVDSQALVSGLKQHGH 422


>gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 511

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 36/283 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+ A + H     P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73

Query: 63  KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A + +     +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTK 133

Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161
           GKTT    T+ ++  AL  +    + I    +       H+  P  L L RM    VD  
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S     +     +   I V   I+P H+S       E+  + K+EI   ++ 
Sbjct: 194 MKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEI---IDN 250

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
              + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R
Sbjct: 251 CRILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292


>gi|160933177|ref|ZP_02080566.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
 gi|156868251|gb|EDO61623.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
          Length = 492

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I A+TGS GKTTT  +++  L +  KT    G    +IG PL    +P   +    ++ +
Sbjct: 148 IYAVTGSDGKTTTTTIISEMLKAAGKTVHLGG----NIGCPL----LPKVEEIRKDDVAV 199

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + ++    P +AV+T +AP HL     ++E   AK  I       G   LN D+
Sbjct: 200 VELSSFQLISMRKSPDVAVVTNLAPNHLDIHKDMQEYIDAKKNIILHQNAFGRAVLNLDN 259

Query: 230 SF 231
             
Sbjct: 260 EI 261


>gi|291457563|ref|ZP_06596953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
 gi|291380616|gb|EFE88134.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
          Length = 481

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 22/278 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR    A  I ITG+ GKT+T EM +  L++        G+  +   + ++L+R   +  
Sbjct: 95  ARTGKPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASG-DMSMSLSRCATNPK 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +  + +S   ++ F T  +    A IT IA  HL    G E  A+ K+++F    +  
Sbjct: 154 HDVLCVELSSF-QLHF-TDSLELDCAAITNIADDHLDWHGGRENYAADKSKVFRAARR-- 209

Query: 222 TIFLNYDDS-FFELLKAKSHALGIKTI-YSFGKSKNADFQLRK-WKQCSEQSWMEVQLQG 278
            I  N  D+   EL +A   A G + + ++  + +     +   W    ++S +     G
Sbjct: 210 VIAYNAQDAKVSELAQAAPVAAGCRKVGFTLNEPEAGQIGIADGW--IVDRSGVAGGKVG 267

Query: 279 KSMEVVH----------HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +++             G  Y H+  + L  L +V  L AD +TA++AL  F P   R 
Sbjct: 268 EPIKLAAIADFTHLMEPDGSLYPHLVADALTALVLVLGLGADRETALEALQTFKPGGHRI 327

Query: 328 KRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    A +N G    +D+S   N  +  A++S  S  S
Sbjct: 328 ETVAEARVNGGVIRFVDDSKATNGHAANASLSSFSAKS 365


>gi|298369634|ref|ZP_06980951.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282191|gb|EFI23679.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 152/379 (40%), Gaps = 46/379 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+  IG   N  G    L +       G + + 
Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCV 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D +    +  K      K   ++G    AD      +    Q    V +  K  E    G
Sbjct: 219 DSAHVRAILPKVS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVNMKGHERKTFG 274

Query: 288 I-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           +     G H   N L  +G+   + A V+   + L  F   EG G+R++      L  G 
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGAPVEAIQQGLLGF---EGVGRRFQKYGDIKLPNGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS- 397
             L+ + Y  +P  M A ++      P    +R+ VL         ++    D  ++L+ 
Sbjct: 332 TALVVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKILNT 387

Query: 398 --LYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
             L  ++ V+ +G   +A  D  AL R+I V       Y E++  L   + + L DGD+V
Sbjct: 388 VDLLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCESVSELPAMLLNVLQDGDMV 447

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +  +  +    R+   LLE
Sbjct: 448 L--NMGAGNINRVPTALLE 464


>gi|170761088|ref|YP_001788857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226711901|sp|B1KTB9|MURD_CLOBM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169408077|gb|ACA56488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 458

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   K+ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSDNLLV 225

Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           LN DD     +  ++ ALG       ++ +Y+     N    ++  + C  +   +++L+
Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEICDSK---DIKLK 280

Query: 278 GK 279
           G+
Sbjct: 281 GR 282


>gi|283783550|ref|YP_003374304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
 gi|283441283|gb|ADB13749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
          Length = 533

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 17/219 (7%)

Query: 49  PHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           P  D HDF      K   +V        T  +    S +IPV    +V  A      + R
Sbjct: 62  PDADIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMS--EVELAWRLRVPSQR 119

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A  I ITG+ GKT+T EM +  L++       +G    +IG  ++ A +  + D  
Sbjct: 120 TNKPAYWIGITGTNGKTSTTEMTSAMLTACGLNAPAVG----NIGKSVSHAALECEHDAL 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L      T  +    A IT IA  HL    G+E  A  K+++F  ++K   +
Sbjct: 176 CVELSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMESYARDKSKVFNNVQK-ALV 230

Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLR 261
           +   D+   +L      A G K I ++  + K+ +  ++
Sbjct: 231 YNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVK 269


>gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
 gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
          Length = 495

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 30  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 90  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149


>gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA2]
 gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL044PA1]
 gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA3]
          Length = 499

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  ++G H  G  F   A + GA  V+ +           +PV 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDEHGAKLAVEAGVPVV 75

Query: 87  GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    +        T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  IVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFLVEAGLRTAGHHVGTIGTIG 135

Query: 145 NHI-GVPLTLAR----MPVDVDF-GIF----ELGMSHLGEIRFLTHLVRPH--------I 186
             + G  L  AR     P   D  G+F    E G S +  +   +H +           +
Sbjct: 136 FRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDV-VMEVSSHALALQRVDGTCFDV 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T +   HL     +++   AKA +F   L + G I  N DD     L  +  A G++
Sbjct: 195 VAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGVI--NVDDPRGRQLIERMQANGVR 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W   +  +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLPGEFNVRNAAMALAMLET 311

Query: 306 LTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPASMKAAISVLSQI 363
                D     L S   P    G+  R  L     T L+D  +   P ++ +A+     +
Sbjct: 312 AGLAFDDVADGLCSAQVP----GRMERVDLGADAPTALVD--FAHTPQAIASALDAARSL 365

Query: 364 SPHGEGRRIAVLG-----DMCEMGELSQ 386
           +    GR IAVLG     D  + G + Q
Sbjct: 366 AD--SGRLIAVLGAGGDRDAVKRGPMGQ 391


>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
 gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
          Length = 508

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 51/385 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82
           + GI+ +S+ I  +  F AIKG   DGH +I  A+   A +++     + + +  +    
Sbjct: 28  IRGIAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKAAIIIYDNSADKNFIKELEDKH 87

Query: 83  IPVFGVDDVLGALNKLA-VAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             V+ +  V      LA ++A+       K   IAITG+ GKTTT  +L   L + K   
Sbjct: 88  TYVYFI-AVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKSVLEANKNKT 146

Query: 138 ACIGSYNNHIGVPLTLARM--PVDVDF-GIFELGMSHLGEIRFLTHLVRP---------- 184
           A IG+  N IG       +  P  +D   IF+  +      + ++H+V            
Sbjct: 147 ALIGTIKNMIGKTEIKTNLTTPESIDLENIFDKALK-----KEVSHIVMEASSQALAMDR 201

Query: 185 ------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFEL 234
                   A+ T I   HL     ++    AK ++F  L+++        +N D   F+ 
Sbjct: 202 CDYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKNKKLAIVNIDTDNFKQ 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMA 293
           +      LGIK + ++G ++ AD+  +     S+ +  E   +GK +  V    +G    
Sbjct: 262 ISNYIKKLGIKMV-TYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSMLGRFNI 320

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPA 351
            N L  L  VS    D++ +IKA+     K     R+     +   F   +D  Y+  P 
Sbjct: 321 LNSLSVLAYVSEYKLDIEKSIKAMR----KVQVAGRFEIVTKEKHPFIAAVD--YSHTPD 374

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           S++  +    +++P    R I V G
Sbjct: 375 SLENILKEARKLNPK---RVIVVFG 396


>gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 445

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 36/202 (17%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145
           VLG +  LA     R    +IAITGS GKTT   ++          Y CI          
Sbjct: 94  VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143

Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +IG P+  A   R        + EL    L      T  +RP  A +  I+  HL  +  
Sbjct: 144 NIGTPVLEAEWQREGKKAGVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           + + A  KA+IF G    G   LN DD F   +K        + +  F     ADF L  
Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251

Query: 262 ---KWKQCSEQ--SWMEVQLQG 278
              + KQ  E   +  ++ LQG
Sbjct: 252 ETGRLKQGDEDLIATQDIPLQG 273


>gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
 gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 141/353 (39%), Gaps = 46/353 (13%)

Query: 63  KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +VV       N   + +   L IPV         + + A+ A L      IAI G+
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPV---------IPRAAMLAELMRFRHGIAIAGT 123

Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +++  +A   +  ++  IG   N  G    L +      + + E   S   +
Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSCGANAQLGKSA----YFVVEADES---D 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYDDSFF 232
             FL   ++P +AV+T I   H+  + G  E++ +   E    L   G  +    D+   
Sbjct: 176 ASFL--FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEIC 233

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGY 290
            +L A       +   ++G  + A ++   W Q    S   V      K + +     G 
Sbjct: 234 RILPAIQ-----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGR 288

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347
           H   N L ++ I + L  D D+ ++ L  F   +G G+R++    + F     +I + Y 
Sbjct: 289 HNVLNALASIAIATELGVDDDSIVRGLQKF---QGVGRRFQMLGEKQFEKGAAIIVDDYG 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  + + I    ++ P  E R + V          +QS H    + LSL +
Sbjct: 346 HHPQEILSTIDAFRRVWP--ERRLVHVF--QPHRYTRTQSLHRQFVDALSLSD 394


>gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
 gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
          Length = 485

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 139/345 (40%), Gaps = 33/345 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR++   + FFA+ G   DG  FI  A+  GA  V +  +   + G   +P  
Sbjct: 22  VTGLAADSRAVKLGDLFFALAGTKTDGARFIDAAIASGA--VAIVGEHAPATG--RVPFI 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              +   AL   A     R  ATI A+TG+ GKT+           +    A IG+    
Sbjct: 78  ATPNPRRALALAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGT---- 133

Query: 147 IGVPLTLARM---------PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187
           IGV +T +R          P+++   + +L   G++HL       G  ++    VR   A
Sbjct: 134 IGV-VTPSRTVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRLDGVRVRAA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  H+     +      K  +F  L E  G   ++ D      +   ++A  ++ 
Sbjct: 193 GFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGIAVISTDHDCSHTVIEAANARKVRV 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    +S  A   +R  +   E     V L+  G+   +    +G    +N L++ G+V 
Sbjct: 253 MRVGRRSDGALAGIRLVEAAIEDFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              +D D    AL   H +  RG+      + G    +D ++  +
Sbjct: 313 GTGSDPDQVFAALE--HLEGARGRLELVGEHNGAPVFVDYAHKPD 355


>gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 438

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 151/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G    AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQFAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414


>gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
 gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
          Length = 495

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 30  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 90  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149


>gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 147/363 (40%), Gaps = 49/363 (13%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +A + +  T+         IG  LT A     +  G + + 
Sbjct: 108 IAIAGTHGKTTTTSLTASILAAAGLDPTFV--------IGGKLTAAGTNARLGKGSYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 160 EADESDASFL--YLTPLMAVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 217

Query: 228 DDSFFELLK---AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQG---K 279
           D      +    +K HA       ++G   +AD      +    Q    V  +L+G   +
Sbjct: 218 DSEHVRAILPRISKPHA-------TYGLDDSADIYATDVESIGAQMKFTVHARLKGHEPR 270

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALN 335
           + +VV +  G H   N L  +G+      D +   + L  F    G G+R++      L 
Sbjct: 271 TFDVVLNLPGRHNVLNALAAIGVALECGVDEEAVRRGLEGF---AGVGRRFQSYGEIELP 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           QG   L+ + Y  +P  M A +S      P    +R+ VL         ++    D ++V
Sbjct: 328 QGGKALVVDDYGHHPVEMAATLSAARGAYPD---KRL-VLAFQPHRYTRTRDLFDDFSKV 383

Query: 396 LSLYNI---SHVWLSGFHVLALKD-ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           L+  ++   + V+ +G   L     AL R++  +      Y   ++ L   +   L DGD
Sbjct: 384 LNTVDVLVLTDVYAAGEDPLPQDSRALARNVRAYGKVDPLYCADVNELPAMLLDVLRDGD 443

Query: 446 VVV 448
           V++
Sbjct: 444 VLL 446


>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 506

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 164/404 (40%), Gaps = 58/404 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR IA +  F  + G   DGH +I  AV+KGA ++VV  D  A+    +I V 
Sbjct: 23  VRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKGASVIVVERDEEAAQIPGTITVL 82

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+    AL  ++ A       K   I +TG+ GKTTT  M+   L +  K    IG+  
Sbjct: 83  KVESARYALALMSAALFDYPAEKLITIGLTGTKGKTTTTYMIKNVLEAAGKKVGLIGTIG 142

Query: 145 NHIG---VP--------LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             IG   +P          L RM         ++ + E+    L   R  T  +     V
Sbjct: 143 AMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVMEVSSQGLKMDR--TAGIMFDYGV 200

Query: 189 ITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T ++P H+  +  +  EE    K+ +F    K G   LN DD   E + A +H      
Sbjct: 201 FTNLSPDHIGPNEHASFEEYLECKSMLFRQC-KIG--ILNADDEHSEAV-AANHTC---E 253

Query: 247 IYSFGKSKN--------------ADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYH 291
           I+SFG   N              AD    K    + +  M   ++G    E   H  G  
Sbjct: 254 IHSFGVEDNNEKTFLGKPLDLVAADLGFIKE---NGKLGMYFHVKGCMDCEARVHIPGRF 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L+T+ +V  L    D AI  L   +  + +G+     +++ ++ +ID  Y  N  
Sbjct: 311 SVYNSLVTM-LVCHLAGISDQAI--LDGLNKVQVKGRVEMLPVSKDYYLIID--YAHNEV 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           S ++ ++ L +  P    R I V G     G  S+    D+ EV
Sbjct: 366 STRSVLTTLMEYHPK---RLICVYGG---GGNRSKLRRYDMGEV 403


>gi|90020493|ref|YP_526320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
 gi|122063257|sp|Q21MH1|MURD_SACD2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89950093|gb|ABD80108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 21/256 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA ++ ITGS GK+T   ++ +A  +     A  G    +IGVP+       DV+  + E
Sbjct: 114 KAPVVGITGSNGKSTVTTLVGLAAENAGMNVAVGG----NIGVPVLDLLADADVELYVLE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  ++      +  +A +  ++P H+  +  +     AK  I+ G +K   I  N
Sbjct: 170 LSSFQLESVKR----AQLDVACVLNVSPDHMDRYPSLAHYCQAKQRIYFGAKK---IVYN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D+    L       G++  Y F   K  +   +     ++ + + +  Q     V   
Sbjct: 223 LEDT----LTIPPVMAGVER-YGFSSKKAVEENEKHVLLNNDTNALSLNGQ-DVFSVADI 276

Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            I G H  +N L  L I            +AL  F   EG   R +   N+   T I++S
Sbjct: 277 KIAGAHNLKNALAALAICDAANIPFAGLKQALQEF---EGLPHRCQWVANKNGVTYINDS 333

Query: 346 YNANPASMKAAISVLS 361
              N  S +AAI  L+
Sbjct: 334 KATNIGSAQAAIEGLA 349


>gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
 gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
          Length = 472

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 130/326 (39%), Gaps = 68/326 (20%)

Query: 63  KGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T + A      +   L IPV    ++L  L       R R     IA+ G+
Sbjct: 62  ENASVVVVSTAISAENPEIQAAKELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       I   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 113 HGKTTTTAM-------ISGIYAQAGL-------------DPTFVNGGLVKSAGTHARLGS 152

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +AV+T I   H+  + G  E +          L   G 
Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGR 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
             +  DD     L  K   +G + I ++G S++AD ++ K++Q   Q +  +  +G   +
Sbjct: 212 AVMCIDDPVIRSLLPK---IG-RYITTYGFSEDADVRITKYEQKGNQGFFTIAREGMPEL 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335
            VV +  G H A N    + + +    D    + AL  F   +G G+R+    N      
Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEF---QGTGRRFDFLGNYALRNV 324

Query: 336 ---QGFFTLIDESYNANPASMKAAIS 358
              +G   L+D+ Y  +P  + A I 
Sbjct: 325 NGKEGDVMLVDD-YGHHPTEVDATIK 349


>gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
 gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
          Length = 499

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 34  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 94  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153


>gi|221141545|ref|ZP_03566038.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|269941218|emb|CBI49606.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|302751566|gb|ADL65743.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329314414|gb|AEB88827.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQIMDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio cholerae]
          Length = 495

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 30  LELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 90  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149


>gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           J2315]
 gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           J2315]
          Length = 465

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAAGKVDPVFVATVDDVPDALAKVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 457

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D+ +  LS F    G  KR+  
Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEY 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFND 374


>gi|330973391|gb|EGH73457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 137

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 9/66 (13%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEV 395
           +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++      +V
Sbjct: 13  VIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAHAAGKV 68

Query: 396 LSLYNI 401
            +LY +
Sbjct: 69  SALYAV 74


>gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
 gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
          Length = 515

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 150/392 (38%), Gaps = 76/392 (19%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           D+RS+   +AFFA      D   FI  A+++GA  V+V  +     + +  +L++P    
Sbjct: 34  DTRSLTAGDAFFAYAVDGADNRAFIDGALERGAAAVLVQPEGFSGAIDASTTLAVP---- 89

Query: 89  DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                ALN+LA  +A+      +     + +TG+ GKT+  + ++ AL+++ K  A IG+
Sbjct: 90  -----ALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGKRCAIIGT 144

Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184
                     H G      P     +    D G   + M       H G +         
Sbjct: 145 LGTGLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAF---- 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV T +   HL      E   +AKA +F   E    + +N DD+    L A +     
Sbjct: 201 DIAVFTNLTQDHLDYHHTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTQ---- 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNML 297
                 G ++   + L   +Q + Q+  +  L   ++     G  +H+       A+  +
Sbjct: 256 ------GHARTIAYGLDSAQQSAPQA--DASLLASNVRATPTGTAFHLSTSDWGNAEVEV 307

Query: 298 MTLGIVSILTADV------------DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDE 344
            TLG  ++                 D A+  L+      GR +R    L N     +ID 
Sbjct: 308 QTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVID- 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            Y   P +++  +  L  ++    G  I + G
Sbjct: 367 -YAHTPDALEKTLEALRPMAAARGGELICMFG 397


>gi|167759619|ref|ZP_02431746.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
 gi|167662745|gb|EDS06875.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
          Length = 487

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 35/268 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+  L +        G  +  I V   L  +  ++  G  EL ++
Sbjct: 142 IAISGTHGKTTTTSMLSHILLA--------GEMDPTISVGGILKAIGGNIKVGKSELFVT 193

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I+VI  I   HL  F  +++I S+  +  + L K GT+ +N +  
Sbjct: 194 EACEYTNSFLHFFPKISVILNIDEDHLDFFKDLDDIRSSFHKFAKLLPKDGTLIINGN-- 251

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-- 288
             + L   +  L  + I  +G   + D+        S  +    +L   S ++V  G+  
Sbjct: 252 -IDKLDCITKGLDCRII-KYGDDSSMDY--------SATNISHNKLGEASFDLVKAGVFV 301

Query: 289 --------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  + +  +L   +D   K L  F    G  +R+         T
Sbjct: 302 DRISLSVNGDHNVSNALAAIAVSDLLGVSLDKMKKGLKEF---TGTNRRFEYKGEMDGVT 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGE 368
           +ID+ Y  +P  + A ++  ++  PH E
Sbjct: 359 IIDD-YAHHPTEINATLTA-AKYYPHRE 384


>gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
 gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
          Length = 486

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 38/362 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR +     F AI G   +GH++I  A++ GA  +V        +  +S  V 
Sbjct: 23  ITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSGANAIVCEQLPQQPLPDVSYIVV 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---------------TIALS 131
                  AL           K T++ +TG+ GKTT   +L               T+A+ 
Sbjct: 83  PNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVY 142

Query: 132 SIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              + +    +  + + +   L  M    V +   E+    + + R  T  ++    + T
Sbjct: 143 VDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHR--TEGLQFAGGIFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKT 246
            +   HL            K   F+ L  T    +N DD       +  KA+     +KT
Sbjct: 201 NLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDKNGAFMLQNTKAQKKTYALKT 260

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                   +AD++        E  +  + L+    EV    IG   A N+L      ++L
Sbjct: 261 --------HADYK----AYIIESRFDGLLLRINQHEVWTKLIGEFNAYNLLAVYATATLL 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    +  +S   P  GR +    A   G  T++D  Y   P +++  +  ++ I  H
Sbjct: 309 GIDELETLTLISAIEPVAGRFQYAVSAT--GVITIVD--YAHTPDALENVLKTINDIRTH 364

Query: 367 GE 368
            E
Sbjct: 365 NE 366


>gi|304380665|ref|ZP_07363336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340772|gb|EFM06701.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 89  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 235

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 236 IYAQNIQIMDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378


>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 512

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN +  DSRS++P + F  + G   DGH F   AV +GA  + V       +  + +P  
Sbjct: 30  VNRVVFDSRSVSPGDIFTCVPGGRTDGHGFARDAVDRGAVALCV----ARPLAEVQVPQL 85

Query: 87  GVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              D    + +LA       AR      +I ITG+ GKTT+  M+   L +       +G
Sbjct: 86  VSRDPRAFMGRLAATLYGWPAR---DLKMIGITGTNGKTTSTYMMGSILEAQGTRTGLLG 142

Query: 142 S 142
           +
Sbjct: 143 T 143


>gi|225181552|ref|ZP_03734994.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167800|gb|EEG76609.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 898

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 100/267 (37%), Gaps = 26/267 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALS--SIKKTYACI-GSYNNHIGV-------PLTLARM 156
           +  + ++TG+ GKTTT  ML   +    +     C  G Y N   V       PL+   +
Sbjct: 479 RVPVFSVTGTNGKTTTARMLEFVMRRHGLYTGICCTDGIYFNGQQVKKGDLTGPLSARTV 538

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE---EIASAKAEI 213
               D  +  L  +  G IR      R  +AVIT I   HL    GIE   ++A  K+ +
Sbjct: 539 LAHPDIEVAVLETARGGLIRRGLGYDRADVAVITNIRADHLGQ-DGIETLDDLAHVKSLV 597

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHAL---------GIKTIYSFGKSKNADFQLRKWK 264
            E +   G + LN D+     L A+  A           I   +  GK   A F  R   
Sbjct: 598 AEAVYPAGCVVLNADEPHVNELAARVWAEVIYVSMQSDNIVVRHHLGKGGRAVFVRRGLV 657

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +  S +    + +S  V H G   H  +N+L  L            A   L  F  + 
Sbjct: 658 LAAHGSGVVPVGRVRSFVVTHGGRALHQVENLLGALAACWGFGLSPRQAAAYLRTFAAQP 717

Query: 325 GRGKRYRCALNQ--GFFTLIDESYNAN 349
           G     RC L Q      L+D  +NA+
Sbjct: 718 GDNP-GRCNLYQVGDIRVLVDYGHNAD 743


>gi|223043731|ref|ZP_03613774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
 gi|222442828|gb|EEE48930.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
          Length = 449

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A II +TG+ GKTT    +T  +  + K     G  + +IG   +     V  D  
Sbjct: 107 LISEAPIIGVTGTNGKTT----VTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEVKAD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L     +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 161 --EYLITELSSFQLLGIDEYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LK+K+
Sbjct: 219 LICNYHQRHLIETENLKSKT 238


>gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 505

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 50/386 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   + GI   S S+ P + F  + G   DGHD++  A+Q+G   ++    +    G  S
Sbjct: 22  PDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEAIQRGCAALMAEKKVERLEG--S 79

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D   A+  LA A      +   +I +TG+ GKTTT  M+             I
Sbjct: 80  IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIGVTGTNGKTTTTHMIEHIFHHTGHKTGLI 139

Query: 141 GSYNNHIG---------VPLT------LARMP-VDVDFGIFELGMSH---LGEIRFLTHL 181
           G+ +  +G          P +      L RM   +  + + E+  SH   +G +R     
Sbjct: 140 GTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKYAVLEVS-SHALRMGRVRGCNF- 197

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI----FLNYDDSFFELLK 236
                AV T ++  HL   S +++    K+ +F  L  + G++     LN DD F + L 
Sbjct: 198 ---KTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYGSLPKVAILNADDPFSKKLA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQ 294
           AK+ A     +  +G  + +D +  + +   E +  W++  L    + +  + +G     
Sbjct: 255 AKTSA----QVIHYGIDQPSDVRASEIRMNQESTSFWLDTYLGSTWIHL--NVVGIFNVY 308

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +  +    ++   + L  F   +GR +       Q F  ++D  Y  NP  ++
Sbjct: 309 NALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIETG--QDFQVIVD--YAHNPDGLE 364

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCE 380
             IS    I+   +G+ IA++G  CE
Sbjct: 365 KVISTARAIT---KGKIIALIG--CE 385


>gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           str. 13]
          Length = 466

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 123 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 168

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 169 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 224

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 225 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 277

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D+ +  LS F    G  KR+  
Sbjct: 278 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEY 330

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 331 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFND 383


>gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora
           setae KM-6054]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 32/308 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+     +PV    D L AL    +  R       +A+ G+ GKTTT  ML ++L
Sbjct: 82  NPELVAAR-ERGVPVVHRSDALAAL----MGGR-----RALAVAGTHGKTTTTSMLAVSL 131

Query: 131 SSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +  + +YA  G  +     P + A        G  E+ ++   E     H   P +A+
Sbjct: 132 GELGLEPSYAIGGDLD----APGSNAH------HGAGEIFVAEADESDRSFHKYAPEVAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
           +  +   H +N++ IEEI  +       ++  GT+ ++ D +   EL +  +   G+  +
Sbjct: 182 VLNVELDHHANYASIEEIHQSFETFVGRIQPGGTLVVSADHEGARELTRRVAGRAGLNVV 241

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G +++AD ++         S + V+L G+ +       G H A N +  L     L 
Sbjct: 242 -TVGAAEDADVRVLAVAAHGMTSEVTVELGGERLVFTVSVPGRHYAHNAVAALAAGVALG 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   KAL  +      G R R  L  +   T + +SY  +P  M A +  + + +  
Sbjct: 301 VPAEGLAKALGAY-----TGVRRRLQLKGEARGTQVIDSYAHHPTEMAADLEAIREAA-- 353

Query: 367 GEGRRIAV 374
           G GR + V
Sbjct: 354 GAGRVLVV 361


>gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
 gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
          Length = 512

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166


>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 448

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 28/193 (14%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIAL 130
           T +V     L IP+         L ++AVA  L S +  +IA+TGS GKTTT  ++   L
Sbjct: 84  TALVKQAKKLKIPI---------LTEVAVA--LSSFEGRLIAVTGSNGKTTTTSLIRDML 132

Query: 131 SSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            S  +     G    +IG+P+   +  +  D D  + EL    L      T  +RP IA+
Sbjct: 133 KSDGQKVTTAG----NIGIPVCEVIKDLTAD-DTLLLELSSFQL----MGTPDIRPDIAL 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   HL      E   +AK ++ +       + LN D    +    K+HA     + 
Sbjct: 184 ITNIFANHLDYHGTRENYVAAKFQLTKNQTSNQLLVLNADGQDTDEFIKKTHA----KVV 239

Query: 249 SFGKSKNADFQLR 261
           +F + KN D+ +R
Sbjct: 240 AFSRIKN-DYTVR 251


>gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str.
           13]
          Length = 435

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 60/295 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 92  VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 137

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 138 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 193

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 194 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 246

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D+ +  LS F    G  KR+  
Sbjct: 247 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEY 299

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDM 378
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D 
Sbjct: 300 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDF 353


>gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
 gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
          Length = 509

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 44  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 103

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 104 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 163


>gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591]
 gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591]
          Length = 486

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  K   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGHAVMCLDDAVIRELLPK---VG-RHITTYGFSDDADVRVADYRQVGAQGLFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QGK  + V  +  G H A N    + + +    D +  ++AL+ F   +G G+R+
Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEQGIDDEAILRALARF---QGTGRRF 328


>gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
 gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
          Length = 486

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F  I G  +DGH FI   ++KGA ++VV  D+ A  G   + V   DD  
Sbjct: 29  DSRKVEENSVFVCISGAAFDGHKFIGQVIEKGAKVIVVQQDVEAPKG---VTVIRFDDTR 85

Query: 93  GALNKLAVA 101
            AL +++ A
Sbjct: 86  KALAEMSAA 94


>gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
 gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
          Length = 478

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 24/257 (9%)

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           L++P I+++T I   HL N++G  E + +        L   G   L  DD+    +  + 
Sbjct: 183 LLQPMISIVTNIDADHLENYNGSYETLKAGFVRFLHNLPFYGLAVLCIDDAGVRSILPE- 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNML 297
             +G + + ++G S++AD +    +Q       +V    + +   V  +  G H   N L
Sbjct: 242 --VG-RPVRTYGFSEDADVRAINVRQKGLAMHFDVIAHDEDRCFSVTLNMAGKHNVLNAL 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASM 353
             + +   L  D +T I+ L+ F   +G  +R+    R A + GF  +  E Y  +P  +
Sbjct: 299 AAIIVGEELGIDRETIIEGLAQF---KGVARRFTHHGRIAHDHGFADVF-EDYGHHPREI 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
           KA   VL        GRRI  +         ++    D AEVL++ +   ++ V+ +G  
Sbjct: 355 KA---VLDAAMEGFAGRRIVAVFQPHRFTR-TRDLLDDFAEVLAVCDCLVLTEVYAAGEE 410

Query: 411 VLALKDA--LPRSIHVH 425
            +A  DA  L R+I  H
Sbjct: 411 PIAGADARDLTRAIRAH 427


>gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
 gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
          Length = 512

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166


>gi|330895231|gb|EGH27569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 161

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 9/66 (13%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEV 395
           +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++      +V
Sbjct: 37  VIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAGKV 92

Query: 396 LSLYNI 401
            +LY +
Sbjct: 93  SALYAV 98


>gi|325475430|gb|EGC78611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Treponema denticola
           F0402]
          Length = 482

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 24/146 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------- 156
           SKA I+A+TGS GK++T   L   L  +         YN  +G  +T++ +         
Sbjct: 111 SKAPILAVTGSKGKSSTVSALYYGLKKL--------GYNAFLGGNITVSPLSFFEETSCD 162

Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            PV     + EL    L +++    L    IA+IT I P HL+ +  +E+  + K  I+E
Sbjct: 163 TPV-----VLELSSWQLADLKNKKLLKP-KIAIITPIMPDHLNWYGTMEKYVADKKIIYE 216

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA 241
            +++   +  N+DD + ++   ++ A
Sbjct: 217 NMDEADYLICNFDDGWGKIFAEETRA 242


>gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 135/357 (37%), Gaps = 42/357 (11%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           H DG   I  A++ GA  V+       M A      +PV G+ ++ G L           
Sbjct: 57  HGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRILPVDGLAELAGPLAAQWYGVPGPE 116

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGI 164
              +I +TG+ GKT+  + +  AL+   +  A +G+        + +T    P  +    
Sbjct: 117 ALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGTLGTGFVDALAVTGFTTPDAIQL-Q 175

Query: 165 FELGMSHLGEIRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKA 211
             L   H    R +   V  H             IAV T +   HL     + E   AKA
Sbjct: 176 RSLADLHRAGARAIAMEVSSHGLEQGRVDGTCFDIAVFTNLTQDHLDYHGTMAEYELAKA 235

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQS 270
            +F G        +N DD+    L   + A  I+TI Y       A    ++W + S   
Sbjct: 236 RLF-GWPGLRAAVINRDDAAGVRLLQNARA-DIETIEYGIDGEAAAQHGAKQWLRASN-- 291

Query: 271 WMEVQLQGKSMEV--------VHHG-IGYHMAQNMLMTLGIVSILTADV--DTAIKALSV 319
            +     G + +V        VH   +G     N+L  LG  ++LTA V    AI  L  
Sbjct: 292 -VRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLG--ALLTAGVPWPDAIAHLEK 348

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P  GR +R+      G   ++D  Y   P +++  +  L+ I+    G+  AV G
Sbjct: 349 LQPVSGRMERF--GGEDGPLVVVD--YAHTPDALEQTLRALAPITEARGGKLWAVFG 401


>gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
 gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
          Length = 488

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGNSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVENYRQTGAQGHFTLVR 276

Query: 277 QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  + V  +  G H A N    + + +    + +  ++AL  F   +G G+R+
Sbjct: 277 QDKPELRVTLNAPGRHNALNAAAAVSVATEEGIEDEAILRALESF---QGTGRRF 328


>gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
 gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
          Length = 498

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 155/384 (40%), Gaps = 35/384 (9%)

Query: 18  SIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++G+  QG     + G+++DSR + P   F A+ G    G  FI  A+ + AG ++ + +
Sbjct: 15  TLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTDAE 74

Query: 74  MVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEM 125
                   +    + +   +D    L + A     R   T++A+TG+ GKT+    T+++
Sbjct: 75  GARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTRQI 134

Query: 126 L------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEI 175
                   + L +     A      +    P+TL R+  +    G+  + M   SH  + 
Sbjct: 135 WYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGLDQ 194

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFEL 234
           R L  +V       T     HL      E    AK  +F   L   G   +N DD    L
Sbjct: 195 RRLDGMVL-SAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGPL 253

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHM 292
           +   +   G + I   G  ++ + +LR   Q  + +  E++   QG+S     + IG   
Sbjct: 254 VAQIAEERGQEVI---GVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQ 310

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A+N+L+  G+     +D      AL       GR  +     + G    +D  Y   P +
Sbjct: 311 AENVLLAAGLAIGSGSDPAEVFAALGHLQTVRGR-MQLAATRDNGATVFVD--YAHTPDA 367

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +  A+  L    PH  GR +A++G
Sbjct: 368 VATAVEAL---RPHVIGRIVAIVG 388


>gi|317499409|ref|ZP_07957676.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893281|gb|EFV15496.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 463

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 96/448 (21%), Positives = 173/448 (38%), Gaps = 78/448 (17%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLS------------- 82
           F I G      D I H   KGA + +  T        D+V    +++             
Sbjct: 36  FTISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEEYKEAIRR 95

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV     +LG +        + +    IA++G+ GKTTT  ML+  L +        G
Sbjct: 96  NIPVMKRATLLGQM--------MHNYQNAIAVSGTHGKTTTTSMLSYILLA--------G 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199
           + +  I V   L  +  ++  G  E  ++   E    FL     P I++I  I   H+  
Sbjct: 140 NTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--PKISIILNIEEDHMDF 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKN 255
           F  +++I  +  E    L   G + +N +    D   + LKA+    G++       +KN
Sbjct: 198 FKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYATFGLENDSYDYCAKN 257

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314
             +           +  +   +G+ ++ +   + G H  +N L  +     +  DVDT  
Sbjct: 258 IGY------DAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMK 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365
           K L  F    G  +R+        FT++D+ Y  +P  ++A +                P
Sbjct: 312 KGLLGF---TGAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAKNYPHNELWCVFQP 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
           H   R IA L D  +   LS   H+ + ++ +    +    +G  +++ KD + R     
Sbjct: 368 HTYSRTIAFLDDFAKA--LSLCDHVIVTDIYA----AREKDTG--IVSSKDIVDRMADYD 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + VHY +  D +  FI  +    D+++ 
Sbjct: 420 VDVHYIKEFDDIEKFILKNCKKNDLLIT 447


>gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 484

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 29/218 (13%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S +S  +  Q+ F   +G  +D H +I  A+  GA  ++    +     S S+PVF    
Sbjct: 22  STNSEHVQCQDVFVCREGTSHDSHRYIESAITNGAVAIIATKPI-----SASVPVFVTGS 76

Query: 91  VLGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---- 143
              +L  L + A  +    K   I ITG+ GKTT    L   L + K+  A IG+     
Sbjct: 77  YYQSL--LLIKAFYQYPHKKIRHIGITGTNGKTTVAHGLNQVLKT-KRQSAYIGTLGVEY 133

Query: 144 -------NNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                  +N     +TL  +  D     V   + EL    L + R     V   + VIT 
Sbjct: 134 AGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMELSSHALVQDR--AGFVPLSVGVITN 191

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           I   HL     ++    AK +I + ++  GT  +N DD
Sbjct: 192 IGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAVINLDD 229


>gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
 gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
          Length = 437

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 7/145 (4%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V+  +  L ++ +  R  +K    A+TG+ GKTT   ML      +K  +  I + N 
Sbjct: 81  YFVEHKVKILTEVEIGYRYATKFKYGAVTGTNGKTTITTML---YEMLKYNHKAIVAGN- 136

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG PL+   +  + +     L +S+  ++  + H   PH++V+  +AP HL     +E 
Sbjct: 137 -IGWPLSELALAYEDEEKDVALELSNF-QLLGIEHFA-PHVSVVCNLAPDHLDYMPSVES 193

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDS 230
              +K  I+E   +      N DD+
Sbjct: 194 YYESKMRIYENCTEDDWFLRNVDDA 218


>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 22/134 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------TLARMPVD 159
           S+A +IAITGS GKTTT    T  ++ I    A +     +IG+P+      T A   + 
Sbjct: 110 SQAPMIAITGSNGKTTT----TALINEILGEKAILAG---NIGIPILSVVGETQADKRLV 162

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           ++   F+L           T   +P I VIT I P HL     +E   +AK +I   L++
Sbjct: 163 MEISSFQLQG---------TSFFKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIAANLDE 213

Query: 220 TGTIFLNYDDSFFE 233
              +  NYD    +
Sbjct: 214 QDFLVYNYDQEILQ 227


>gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 149/355 (41%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K+         +IG+P  L  +  + D  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKSAGWSVGVGGNIGLP-ALMLLKQECDLYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L      T  +R   A I  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 158 ELSSFQLET----TTSLRAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG +   D+ L + +    + W+ V+    L  + 
Sbjct: 211 VNSDDALTMPIRGAD-----SRCVSFG-ADVGDYHLNRQQG---EIWLRVRGEKILNTRE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ +L+     
Sbjct: 262 MKIT----GKHNFTNALAALALADAVGIPRASSLKALTTF---TGLAHRFQLSLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSSLAQYLQGDNVRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     I + +  GD+V++  S +C
Sbjct: 370 FGR---DGEQLAALRPEV-----AEQTETMEQAMRIIATRVKSGDMVLL--SPAC 414


>gi|145595523|ref|YP_001159820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salinispora
           tropica CNB-440]
 gi|145304860|gb|ABP55442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinispora
           tropica CNB-440]
          Length = 448

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 139/357 (38%), Gaps = 42/357 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + +TGS GK+TT  +++  L+++ +       +  +IGVP TL  +P   D  + EL
Sbjct: 111 ARTVGVTGSKGKSTTSSLISHLLAAVDQPNV----FGGNIGVP-TL-DLPA-ADLYVLEL 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
                 ++        P +AV+T + P HL    G  E    K  +   G E   T+ +N
Sbjct: 164 SSYQCSDLTD-----SPRVAVVTALFPEHLDAHGGEREYYRDKLNLLAHGPE---TVVVN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D         +  LG + +   G                   W  +  Q      V  
Sbjct: 216 GADPRL------AAELGDRPVVRAGTPDTTHVA----GGPDGTPWFHLGDQPLFPRAVLP 265

Query: 287 GIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +G H   N+ + L ++ +L  DV    DT   A++ F   +G   R    ++    T +
Sbjct: 266 LVGRHNEGNLCVALAVLDVLGVDVLARRDTLAVAVAGF---QGLAHRLTEIVDPSGLTFV 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++   +P +   AI          +GR + V+    + G         LAE      + 
Sbjct: 323 DDTLATSPYAAMHAIDAY-------DGRALTVIVGGADRGLDYTPLRDHLAE--REITVI 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            V  SG  ++A  D LP+       + ++ + L  + +   G V++  ++ S G +R
Sbjct: 374 GVPDSGARIVAALDGLPKVRCDVTGDLVEAVRLARRVTPAGGVVLLSPAAPSYGQFR 430


>gi|42525886|ref|NP_970984.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           denticola ATCC 35405]
 gi|41815936|gb|AAS10865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 24/146 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------- 156
           SKA I+A+TGS GK++T   L   L  +         YN  +G  +T++ +         
Sbjct: 111 SKAPILAVTGSKGKSSTVSALYYGLKKL--------GYNAFLGGNITVSPLSFFEETSCD 162

Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            PV     + EL    L +++    L    IA+IT I P HL+ +  +E+  + K  I+E
Sbjct: 163 TPV-----VLELSSWQLADLKNKKLLKP-KIAIITPIMPDHLNWYGTMEKYVADKKIIYE 216

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA 241
            +++   +  N+DD + ++   ++ A
Sbjct: 217 NMDEADYLICNFDDGWGKIFAEETRA 242


>gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           SM101]
 gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens
           SM101]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +  + +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVKLIPND 215

Query: 221 GTIFLNYDD-SFFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 216 GYIIGNADDKKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+  
Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374


>gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
 gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
          Length = 499

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 150/384 (39%), Gaps = 56/384 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G+++DSR  A    F A+ G    G  FI  A+++GA  V + TD   +     I  
Sbjct: 28  LISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGA--VAILTDAAGA----KIAA 81

Query: 86  FGVDDVLGAL-------NKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
             +++   AL         LA AA L       T++A+TG+ GKT+           +++
Sbjct: 82  QPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATF-------VRQ 134

Query: 136 TYACIGSYNNHIGV-----------------PLTLAR-MPVDVDFGIFELGM---SH-LG 173
            +  +G    ++G                  P+TL R +    + G+    M   SH L 
Sbjct: 135 IWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGLD 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFF 232
           + R     V+   A  T     HL      E   +AKA +F   L + G   +N +DS  
Sbjct: 195 QCRL--DGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRG 252

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             ++A + A G + + S G+    D  L   +       +      +  +   + IG   
Sbjct: 253 AEMRAVAAARG-QEVISIGRGLG-DISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQ 310

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A+N+L+  G+V     D       L       GR   +    + G    +D  Y   P +
Sbjct: 311 AENVLLACGLVIAGGEDPAAVFDTLPQLTTVRGR-MEHAATRDNGASVFVD--YAHTPDA 367

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +  AI  L    PH  GR +A++G
Sbjct: 368 VATAIKAL---RPHVLGRLVAIVG 388


>gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
 gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
          Length = 483

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 166/403 (41%), Gaps = 52/403 (12%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +V +    GI  DSR I     F A++G   DGH++I  AV+ GA  ++V+  + A    
Sbjct: 16  VVKEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIEAVFPV 75

Query: 81  LSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             I +  +   LG L     A+      + K  II ITG+ GKTTT  ++   L S K  
Sbjct: 76  KYIWIKDLRRKLGVL-----ASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSDKT- 129

Query: 137 YACIGSYNNHIGVPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFL 178
            A IG+    IG  +  A    P  +D         E GM +           LG +  L
Sbjct: 130 -ARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGRVDML 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFEL 234
                  +++ T +   HL     +E+   AK ++F    +G EK   I  N DD + + 
Sbjct: 189 EF----DVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVI--NIDDLYGKR 242

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L ++   +      S+G       + +  +   +   +E+ +   S ++    +G +   
Sbjct: 243 LSSEFGGI------SYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVY 296

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  L I  +L  + D  +  +       GR +   C   Q F  ++D S+  +     
Sbjct: 297 NVLGALSIALLLGIERDIILDKIKELKGAPGRYELVNCG--QDFTVIVDYSHTGD----- 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           A  ++L  I+   +G+ I V G   +     +S   ++AE LS
Sbjct: 350 ALENILKSINELKKGKIITVFGCGGDRDPNKRSVMGEIAERLS 392


>gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
 gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
          Length = 445

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 127/317 (40%), Gaps = 42/317 (13%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQKGAGLVVVNTDMVA 76
           GIVP      + +DSR   P +     +   Y G    + +L A Q    LVV     +A
Sbjct: 33  GIVP------VVVDSRDAPPGQDELPAQVRLYKGGLHPEILLQAKQ----LVVSPGIAIA 82

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +    +    GV+ V+G +     AA    KA IIAITGS GK+T    +T  +  +   
Sbjct: 83  TPEIAAAQQHGVE-VIGDIELFVRAA----KAPIIAITGSNGKST----VTTLVGEMANA 133

Query: 137 YACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                +   +IG+P L L  +       + EL    L      TH ++   A +  +   
Sbjct: 134 AGVKTAIGGNIGIPALDLLDVAEPYQLYVLELSSFQLET----THSLKAVAATVLNVTDD 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL  +   E    AK  I++  +   TI  N DD         +  +G  ++     + +
Sbjct: 190 HLDRYPDFEAYRQAKLSIYQDAQ---TIVTNRDDVLTVCATQDNRDVGKHSV----GADD 242

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD+ L + + C   +W+  Q +G          G H   N++  L  +++L A     IK
Sbjct: 243 ADYGLIQQQGC---TWLAYQGEGIISADDLQITGVH---NLMNALSAIALLDAAGVDRIK 296

Query: 316 ALSVFHPKEGRGKRYRC 332
            L     K+  G  +RC
Sbjct: 297 TLPGL--KQFTGLAHRC 311


>gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR + P   F A+KG  +DG  F+  AV +GA  ++ +      IG++S+P    
Sbjct: 19  GMTSDSRKVQPGWLFAALKGSVHDGGKFVPQAVAQGAAAILSD----GGIGAVSVPHVMA 74

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           D+   AL   A          ++A+TG+ GK++T
Sbjct: 75  DEPRRALALAAKRFYGEQPEFVVAVTGTNGKSST 108


>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           felis URRWXCal2]
 gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
           URRWXCal2]
          Length = 449

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GK+TT  +++  L+S    Y   G    +IGVP   A+     D  I EL   
Sbjct: 107 IAVTGTNGKSTTTALISHILNSNGLDYPVAG----NIGVPALQAK--ASKDGYILELSSF 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  ++  T      IAV+  I P HL     +    +AK++IF+ ++K     +N D+ 
Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKDSYAAINIDNY 216

Query: 231 F 231
           +
Sbjct: 217 Y 217


>gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 494

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 127/328 (38%), Gaps = 57/328 (17%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDV 91
           SR+ + +  F A KG   D H F  + + +G  ++VVN   ++   +  + +P     D 
Sbjct: 30  SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQEVKGEVTQVIVP-----DT 84

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148
           L   + LA  +      + T   +TG+ GKT+   M+ +    + K  A +G+    I  
Sbjct: 85  LRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQINE 144

Query: 149 --------VPLTL---ARMPVDVDFGIFELGM---SH---LGEIRFLTHLVRPHIAVITT 191
                    P T+    ++   VD     + M   SH   LG +R     V   +AV + 
Sbjct: 145 EKTKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRG----VEFDVAVFSN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +   HL     +E    AK+ +F    E L K   + LN DD F + L+     +    I
Sbjct: 201 LTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYLE----TVTPYEI 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G    A F  +  K+          LQG   +       YH++   +    I +++ 
Sbjct: 257 LTYGIDNEAQFMAQNIKES---------LQGAQFDFATPFGTYHVSSPYVGKFNISNLMA 307

Query: 308 A---------DVDTAIKALSVFHPKEGR 326
           A         D    ++ +    P EGR
Sbjct: 308 AMIAVWSKGIDFKDIVEVVKSLEPVEGR 335


>gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
 gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKNINHIKDTFKQFVRLIPND 215

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+  
Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFND 374


>gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 499

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 127/336 (37%), Gaps = 34/336 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83
           +N ++  S+ +     FF+IKG + DGH +I  A+ +GA  V V    +  +  LS    
Sbjct: 24  INHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGA--VAVFGTSIEELRLLSTQYS 81

Query: 84  --PVFGVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                 VDD   V+ + +K+        K   I +TG+ GKTT    +   L+ +K    
Sbjct: 82  HCTFLAVDDVRKVMASFSKMYF-DYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140

Query: 139 CIG-----SYNNHIGVPLTLARMPVDVDF-GIF--------ELGMSHLGEIRFLTHLVRP 184
            IG     S    +    +    P  VD   IF        E  +  +  I      V  
Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVED 200

Query: 185 ---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +A+ T ++  HL      E     K ++F+  +      +N DD   ++ K  S  
Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQAKHA---VINIDDQ--DMGKDLSRL 255

Query: 242 L-GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G K  YS   +  A  Q +        S+ ++  +G+S +V     G +   N+L  +
Sbjct: 256 FEGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYGDYNIANVLAAI 315

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G        ++  I  L      EGR +      NQ
Sbjct: 316 GTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQ 351


>gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
          Length = 467

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G +  AD Q+R     + +  M    ++     ++V
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGLA--ADAQVRAVNVEAREGRMHFTVMREDAAPLDV 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337
             +  G H  QN L  + I + L        +AL+ F+    R +RY            G
Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSDGQAAG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 331 SYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDV
Sbjct: 386 TVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDV 445

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 446 VITMGAGSIG 455


>gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
 gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 45/352 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  + L+  L++       +G    +IGVP  L  +  +V+  + EL  
Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               +     HA  ++ + +FG    A F + +  Q  E  +        S E+    +G
Sbjct: 218 ----MQTFPDHAAHLQVV-TFGVELPAQFSVAE-HQGREYLFARDNAVLASSELSL--VG 269

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N+L  L ++     +V  A+ AL     K   G  +RC   A N G    +++S 
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +          D   +  ++    + L
Sbjct: 324 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGA--------DFTPLAPIFATLPLQL 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             F V   K  +P      + ++M+ +   I+  L  GD+V++  S +C  +
Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIIRSIRPELKSGDMVLL--SPACASF 419


>gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
 gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 161/392 (41%), Gaps = 44/392 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N +++ ++ +L IP+    ++LG L        +++  T IA++G+ GKTTT  M++  L
Sbjct: 83  NPELIEAV-ALKIPMLTRAELLGQL--------MKNYDTPIAVSGTHGKTTTTSMISHIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                     G  +  I V   L  +  ++  G     ++   E         P I+VI 
Sbjct: 134 LE--------GDLDPTISVGGILKAIGGNIRVGNSGTFITEACEYTNSFLHFFPKISVIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYS 249
            I   HL  F  +E+I  +  +  E L + GT+ +N +   + E+ +  S       + +
Sbjct: 186 NIEEDHLDFFKDLEDIRHSFHQFAELLPEDGTLIINAEIKDYAEIYEGLS-----CNVVT 240

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306
           +G +   D+  +      E   +   L  +G+  + +   + G H   N L  + +  IL
Sbjct: 241 YGTNGCFDYSAKNITY-DENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIAVADIL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAI----- 357
              +D   + L  F    G  +R+         T+ID+ Y  +P    A++KAA      
Sbjct: 300 GLSIDITKRGLLSF---TGTDRRFEYKGEFNGVTVIDD-YAHHPTEILATLKAAQHSLHN 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           SV     PH   R  A   +  E   LS + H+ LA++ +      + +S   +   K+ 
Sbjct: 356 SVWCVFQPHTYTRTKAFFHEFAEA--LSHADHLVLADIFAARETDTLGISSADL--AKET 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  HY  +   +  F++ +   GD+++ 
Sbjct: 412 EKLGTDTHYFPSFAQIEAFLKENCRPGDLLIT 443


>gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           DM98]
 gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           7894]
 gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           NCTC 13177]
 gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
 gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 152/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +      L  K +  +G + +A  +    +    +    V+ +G+  + VV +
Sbjct: 218 DDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLID 343
             G H  QN L  + I + L    D AI +AL+ F+    R +RY    A   G +TLID
Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
 gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
          Length = 509

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 149/377 (39%), Gaps = 45/377 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ +S +    + F  + G   DG DF   A+  GA   +V+        + +  V 
Sbjct: 36  IKGLATNSHACQTGDLFLGMPGTRVDGGDFWKSAIANGAVGAIVSVSAATKHPAKNECVI 95

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143
            V D+     ++A A       K  ++ ITG+ GKTTT  ++   L++ +   A  G+ Y
Sbjct: 96  PVADMSQTCPEIAAAFYDYPGQKMKMVGITGTNGKTTTTHLVEFILNNAQLPTALFGTLY 155

Query: 144 NNHIGVPLTLA---RMPVDVD------------FGIFELGMSHLGEIRFLTHLVRPHIAV 188
               G   T A     PV++             +GI E+    L + R         +AV
Sbjct: 156 MRWPGFQKTAAYTTSFPVELQNQLAQALAAGSKYGIMEVSSHSLDQKRVWGCTY--EVAV 213

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +++   AKA +F      G   +N DD + + L A+   L  + ++
Sbjct: 214 FTNLTQDHLDYHKDMDDYFEAKARLFSSDYLKGRAIVNADDPYGQKLIAR---LESEKVW 270

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHG--------IGYHMAQNMLMT 299
           S+  S   D     W      S +E +  G K M     G        +G +   NML  
Sbjct: 271 SYSTS---DTSTDLWA-----SDLEYKPTGVKGMLHTPKGEMIFSLPLVGQYNLSNMLAA 322

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G    L  D+   +  LS F    GR +R +    Q    ++D  Y   P S++   ++
Sbjct: 323 VGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDVSVIVD--YAHTPDSLE---NL 377

Query: 360 LSQISPHGEGRRIAVLG 376
           L    P   GR I V G
Sbjct: 378 LKAARPFIPGRMICVFG 394


>gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
 gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
          Length = 489

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 36/302 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85
           V+GI+ DSR++ P   F  +         F+  AV+ GA  +V  + + +  + +  I +
Sbjct: 27  VSGITADSRNVKPGFVFVCLSEV---AKKFVSDAVKAGARFIVAGSAEALPRVDNAQIII 83

Query: 86  FGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           F          KLA A  R R    + A+TG+ GKT+  +           T A IG+  
Sbjct: 84  FPKQHDF--YYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASIGTLG 141

Query: 145 NHIG---VPL--TLARMP--VDVDFGIFELGMSHL----------GEIRFLTHLVRPHIA 187
             +G    P   TL   P  +++   + EL  SH+          G  +   + V+  +A
Sbjct: 142 TAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVKVSVA 201

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  H     G+E+  +AK ++F E L   G   LN D   +  L+     +G + 
Sbjct: 202 AFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELR---RLVGSRN 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGI 302
             ++G +   D +L + K  +    + V++ GK   VV+ G    +G     N+L  L I
Sbjct: 259 TITYGINV-GDVRLTRLKSSTLGHNVAVEICGK---VVYDGAFPVLGKFQIPNLLCALAI 314

Query: 303 VS 304
           V+
Sbjct: 315 VT 316


>gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           C6786]
          Length = 464

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 151/365 (41%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +      L  K +  +G + +A  +    +    +    V  +G+  + VV +
Sbjct: 218 DDPNVRQIV----PLISKPVVRYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
             G H  QN L  + I S L    D AI +AL+ F+    R +RY    +  G +TLID+
Sbjct: 274 LPGLHNVQNALAAIAIASDLDV-ADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLIDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   +
Sbjct: 333 -YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALVL 387

Query: 402 SHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------GDVVVVKS 451
           + V+ +G   +  A  DAL R++    +  ++ +F+     + D        GDVV+   
Sbjct: 388 TEVYAAGEAPITTANGDALSRALRA--AGKVEPVFVATVDEVPDALAKVARVGDVVITMG 445

Query: 452 SNSCG 456
           + S G
Sbjct: 446 AGSIG 450


>gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga
           tractuosa DSM 4126]
 gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga
           tractuosa DSM 4126]
          Length = 455

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 37/230 (16%)

Query: 10  LLQAIQGHSI-----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-- 62
           LL   +G+ +     G++ +G  N  S+    ++ +E      G H +  D IL+A +  
Sbjct: 19  LLAKAKGYDVFVSDFGVISEG--NKASLYQAEVSFEE------GKHTE--DLILNAYKII 68

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           K  G +  N ++V      +IPV         +++L  A    +K  IIAITG+ GK+TT
Sbjct: 69  KSPG-IAPNVEIVKKALGKNIPV---------IDELEFAFGF-TKGKIIAITGTNGKSTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             MLT  L  +K+    +G   N   +  ++A   VD+DF  + L  S      F+    
Sbjct: 118 T-MLTYHL--LKEAGLSVGLGGN---IGKSMAGQLVDIDFDWWVLECSSFQIDGFVN--F 169

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +PHIA++  I P HL  +   +E   ++K  +F+   K     L  +D  
Sbjct: 170 KPHIAILLNITPDHLDRYDYKVENYVASKFSLFKNQGKEDFALLYTEDKL 219


>gi|167768724|ref|ZP_02440777.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
 gi|167669122|gb|EDS13252.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
          Length = 489

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGS GKTTT  ++   L          G    HIG  +    MP+  D    +  ++
Sbjct: 146 IGITGSDGKTTTTTLIAEILKE--------GGRRAHIGGNIGRPLMPILRDIRDNDFAVA 197

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            L   + ++    P IAV+T I+P HL     ++E   AK  I
Sbjct: 198 ELSSFQLISMRESPDIAVVTNISPNHLDVHGNMQEYIDAKRNI 240


>gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
 gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
          Length = 475

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 136/348 (39%), Gaps = 46/348 (13%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLA 154
           +A  +R K+T+ A+ G+ GKTTT  M+   L +  +  T      I SY ++       A
Sbjct: 101 LAELMRLKSTV-AVAGTHGKTTTTSMIAALLDAGGVDPTVINGGIINSYGSN-------A 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R+  + D+ + E   S    +R         IAV+T I P HL ++   + +  A  E  
Sbjct: 153 RLG-NSDWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFV 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G   L  D    + +  +      + I ++G S  AD +    +     +  +V
Sbjct: 207 GNVPFYGAALLCLDHPEVQAILPRVQD---RRIVTYGFSAQADIRGENVRPVPGGNLFDV 263

Query: 275 QLQGKS------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-G 327
            ++ +        +++    G H   N L  +G+   L    D        F   + R  
Sbjct: 264 LIRDRDGHVEKISDILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKRRFT 323

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDM 378
           K     L  G  T+ID+ Y  +P  ++A ++         V++ + PH    R   L D+
Sbjct: 324 KVGEVQLEGGVATVIDD-YGHHPVEIRAVLAAAREGALGRVVAIVQPH----RFTRLRDL 378

Query: 379 CEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             M E  Q+F+  D+     +Y      + G    AL   L R  H H
Sbjct: 379 --MDEFQQAFNDADIVYAAPVYAAGEQPIEGVDSAALVAGLKRRGHRH 424


>gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           denitrificans OS217]
 gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella denitrificans OS217]
          Length = 502

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 29/236 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSI 83
           +S+DSR +     F A+ G   DG  +I  A  +GA   +V+TD       V ++GS   
Sbjct: 23  MSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQGAVAALVHTDDPDSHGKVENLGSGIT 82

Query: 84  PVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           P   V+    +    AVAA+       K  +I ITG+ GKT+  +++    S +    A 
Sbjct: 83  PWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGITGTNGKTSVSQLIAQLTSLLGGKAAV 142

Query: 140 IGSYNNHI-GVPLTLARMPVDV--------DF-----GIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N + G  +       D         DF      I  + +S  G ++     V   
Sbjct: 143 MGTLGNGLWGQLVDSGNTTADAVTVMAQLHDFDVKGADICAMEVSSHGLVQGRVTAVPFD 202

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKA 237
           IAV T +   HL     +   ASAK  +F+         LN DD     +FE L A
Sbjct: 203 IAVFTNLTRDHLDYHGDMASYASAKKRLFQ-FPSLKYALLNLDDDTGAQWFEELAA 257


>gi|205374471|ref|ZP_03227267.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus coahuilensis m4-4]
          Length = 439

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 41/301 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N + +     L +PV      LG   K         K T +A+TG+ GKT+T  +L   +
Sbjct: 73  NHEEIERAKELGLPVIRYHKFLGEFMK---------KFTSVAVTGAHGKTSTTGLLAHVI 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAV 188
           S  K T   IG             +   D  + +FE       E R  FL++   P  A+
Sbjct: 124 SGDKPTSYLIGD---------GTGKGTEDSQYFVFE-----ACEYRRHFLSY--HPDYAI 167

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I   H   F+ +E++ SA  E+   L+    I    DD   + ++ K   +     Y
Sbjct: 168 MTNIDFDHPDYFADVEDVFSAFQEM--ALQVNKGIIACGDDEHLQSIQTKVPVV----FY 221

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-T 307
            FG+    DFQ R        +  +V +  ++       I  +   N+L  LG++++   
Sbjct: 222 GFGEEN--DFQARNITVDENGTTFDVFV--RNTFYASFTISTYGKHNVLNALGVIALCHY 277

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++DTA+         +G  +R+   + +G   +ID+ Y  +P  + A I    Q  P+ 
Sbjct: 278 ENIDTAV-VQERLRTHKGVKRRFTEKV-KGSQVIIDD-YAHHPTEINATIDSARQKYPNR 334

Query: 368 E 368
           E
Sbjct: 335 E 335


>gi|268610569|ref|ZP_06144296.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 42/329 (12%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F   +  + +G D I+H     A ++  N +++A+  S  +PV    D+LG +      A
Sbjct: 58  FIGQRAENIEGADLIVHT----AAIMADNPELIAAKAS-GVPVLERADLLGIVTSWYSNA 112

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                   I ++G+ GKT+T  M+T  L      Y      + +IG      ++P     
Sbjct: 113 --------ICVSGTHGKTSTTSMITQIL------YTAGVDLSAYIG-----GKLPCIGGS 153

Query: 163 GIFELGMSHL---GEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           GI   G S +       F  H ++  P I+VI  I   HL  F  +E I  +  +  E  
Sbjct: 154 GI--AGKSDILVCESCEFEDHFLKFFPDISVILNIDADHLDYFGTLENIIKSFHKFNENT 211

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQL 276
            K   I +N  D     +K+     G K I +FGK  + D+     K +    +  +   
Sbjct: 212 SK--CIIINGSDE--NSMKSLEGITG-KEIITFGKDSSCDYYPENVKHENGLLTTYDAMY 266

Query: 277 QGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+ +  +  H  G H   N L  +     + A+ D   K L  F    G  +R+     
Sbjct: 267 KGEKLGTITLHVAGIHNVLNSLAAVAAARYVGAEFDAIQKGLEEF---RGAKRRFEKLGF 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   T++D+ Y  +P  ++A ++   +++
Sbjct: 324 EKGITVVDD-YAHHPTELEATLNAAMEMN 351


>gi|170755247|ref|YP_001783157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B1 str. Okra]
 gi|226711900|sp|B1IGJ0|MURD_CLOBK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169120459|gb|ACA44295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum B1 str. Okra]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L   ++ Y   +G    +IG PL   +  M  D     
Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--REGYRTWVGG---NIGTPLFANIEEMKED----- 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +  L   + +T  V P I++IT ++P HL      EE   AK  IF+       + 
Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225

Query: 225 LNYDDSF 231
           LN DD  
Sbjct: 226 LNKDDDL 232


>gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum EA 2018]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           A I  +TGS GKTTT  ++   L     KT+  +G    +IG PL      V   D  + 
Sbjct: 118 AKIFGVTGSDGKTTTTTLIYNMLKEEGYKTW--VGG---NIGTPLFSKIKEVSTKDKVVL 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     +T  V P +AV+T ++P HL     +EE  +AK  IF    K   + +
Sbjct: 173 ELSSFQL-----MTIDVSPEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKGNVLII 227

Query: 226 NYDDSFFELLKAKSHALG 243
           N D+     +  +S ALG
Sbjct: 228 NRDNEITNNM--ESEALG 243


>gi|297559871|ref|YP_003678845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844319|gb|ADH66339.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 483

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 95  LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +  + +A RL+    + +A+TG+ GKTTT  ML   L +  +    +G    ++G P+  
Sbjct: 110 IGDVELAWRLKPADQVWLAVTGTNGKTTTVRMLEAMLRADGRDALAVG----NVGTPVVE 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           A  P D      E+    L   +   +  +RPH A +  IAP HL    G++  A AK  
Sbjct: 166 AVQP-DAGGRFREVLAVELSSFQLHWSSSLRPHAATVLNIAPDHLDWHGGLDPYARAKGR 224

Query: 213 IF 214
           I+
Sbjct: 225 IY 226


>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
 gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
          Length = 460

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%)

Query: 102 ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A+ R +++ +IAITG+ GKTT    +T  +  + K          +IG+P+  A   V+ 
Sbjct: 103 AQFRPRSSKVIAITGANGKTT----VTTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVET 158

Query: 161 DFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           D G  ++ +  L   +   T  + P  A +  +   H+  + G+ E A+AKA I +G   
Sbjct: 159 D-GAPDVYVLELSSFQLETTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARILKG--- 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            G   LN +D++      ++ AL  + + +FG
Sbjct: 215 AGVQVLNREDAW-----CRNMALPDQPMVTFG 241


>gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum ATCC 824]
 gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           acetobutylicum ATCC 824]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           A I  +TGS GKTTT  ++   L     KT+  +G    +IG PL      V   D  + 
Sbjct: 118 AKIFGVTGSDGKTTTTTLIYNMLKEEGYKTW--VGG---NIGTPLFSKIKEVSTKDKVVL 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     +T  V P +AV+T ++P HL     +EE  +AK  IF    K   + +
Sbjct: 173 ELSSFQL-----MTIDVSPEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKGNVLII 227

Query: 226 NYDDSFFELLKAKSHALG 243
           N D+     +  +S ALG
Sbjct: 228 NRDNEITNNM--ESEALG 243


>gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A I  +TGS GKTTT    T  + ++ K          +IG PL      +D +  +   
Sbjct: 117 AKIYGVTGSDGKTTT----TTLIYNMLKEQGYKSWVGGNIGAPLFSRIEEIDPEDKV--- 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +  L   + +   V P +AVIT I+P HL     +EE  +AK  IF+       + LN 
Sbjct: 170 -VLELSSFQLMGMDVSPEVAVITNISPNHLDIHKDMEEYVNAKKSIFKYQGNQDVVILNR 228

Query: 228 DDS 230
           D+ 
Sbjct: 229 DNE 231


>gi|154687119|ref|YP_001422280.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           FZB42]
 gi|166222954|sp|A7Z7S3|MURC_BACA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154352970|gb|ABS75049.1| MurC [Bacillus amyloliquefaciens FZB42]
          Length = 432

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 119/299 (39%), Gaps = 36/299 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K T +A+TG+ GKT+T  +L   +   K T   IG             R     +
Sbjct: 95  AEYMKKYTSVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGD---------GTGRGNESSE 145

Query: 162 FGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           + +FE       E R  FL++  +P  A++T I   H   F+ I+++  A   +   L+ 
Sbjct: 146 YFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFANIDDVFDAFQNM--ALQV 196

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              I    DD +      K HA  +  +Y +G  +  DFQ R   + +E +  +V ++  
Sbjct: 197 NKGIIACGDDEYL----PKIHA-NVPVVY-YGTGEENDFQARNIVKNTEGTTFDVFVRNT 250

Query: 280 SMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +  +    G+H   N L  + +      DV+     L  F    G  KR       G 
Sbjct: 251 FYDTFYIPAYGHHNVLNSLAVIALCHYEEIDVNMIKLGLESF----GGVKRRFNEKVIGS 306

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             LID+ Y  +P  +K  I    Q  P  E   IAV          +QSF  + AE LS
Sbjct: 307 QVLIDD-YAHHPTEIKVTIEAARQKYP--EREIIAVF--QPHTFTRTQSFLDEFAESLS 360


>gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
 gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
          Length = 471

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 17/198 (8%)

Query: 37  IAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG- 93
           I P EA F   +K   + G D I  A+  G   V V   +V +     +PV G  ++   
Sbjct: 49  IVPGEAIFCGPLKEELFQGIDAI--AISPG---VAVAEPLVQAALQQGVPVIGDIELFAV 103

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL++ A          I+AITGS GKTT   M+   + +        G+      +   +
Sbjct: 104 ALDQYAPPG-----TKILAITGSNGKTTVTSMVGEMVKNAGWDVEVAGNIG-PAALDALM 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            RM  +    ++ L +S   ++   + L RP  A +  ++  HL  +  IEE A+AKA I
Sbjct: 158 QRMDANKWPHLWALELSSF-QLETTSSL-RPDAATVLNLSEDHLDRYDSIEEYAAAKARI 215

Query: 214 FEGLEKTGTI-FLNYDDS 230
           F      G +  LN DD+
Sbjct: 216 FSRPHNNGCVQILNRDDA 233


>gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
 gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
          Length = 509

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 10/138 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGM 169
           + ITG+ GKTTT  M    L +       +G    ++G P L   R PVD D    EL  
Sbjct: 139 LVITGTNGKTTTVGMTESILRADGLKAIAVG----NVGTPILDAVREPVDYDVFAVELSS 194

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      TH + P  +V+  +A  H+    G E   +AKA+I+E   +   IF   D+
Sbjct: 195 FQL----HYTHTISPVASVVLNLAEDHVDWHDGFENYKAAKAKIYE-RTQIAAIFNAADE 249

Query: 230 SFFELLKAKSHALGIKTI 247
           +  ++++      G + I
Sbjct: 250 ATIKMVEDADVVEGCRAI 267


>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254766040|sp|B8D916|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766041|sp|B8D7C1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 34/255 (13%)

Query: 110 IIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II+ITG+ GK+T   M+  IA  S  K +  +G    +IGVP+ L  +  + D  I EL 
Sbjct: 108 IISITGTNGKSTVATMIEKIAKKSGYKAF--LGG---NIGVPV-LEILDKEADLYIIELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L      T  ++  IAVI  I+  H++ + +G ++  + K  ++   E      +N 
Sbjct: 162 SFQLEN----TFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAE---ICIINS 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EV 283
           +D   ++ K+  H+   K I SFG ++ +D+++     CS+ +   +  + K +    E+
Sbjct: 215 ND---KIEKSLIHSKNKKWI-SFGTNR-SDYRI-----CSKSNDPILFFKNKKILNTSEI 264

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + +G  YH   N+L++L I   +    + AI  L  F        R++   N+     I+
Sbjct: 265 LLYG--YHNYNNILVSLAISDAMQFPRNDAINVLKSF---SNLPHRFQIIKNEKGVRWIN 319

Query: 344 ESYNANPASMKAAIS 358
           +S + N  S + A++
Sbjct: 320 DSKSTNVNSTQVALN 334


>gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 21/158 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV  + +  IP+         ++++  A R  + A +I ITGS GKTTT  ++       
Sbjct: 79  MVLKVKAAGIPI---------ISEIEFAGRY-THAKMICITGSNGKTTTTSLI---YHIF 125

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTI 192
           KK    +G   N IG  L L     D D+ + EL    L  + RF     R +IAV+  I
Sbjct: 126 KKAGYNVGLAGN-IGQSLALQVAEKDYDYYVIELSSFQLDNMYRF-----RANIAVLLNI 179

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            P HL  +   ++    AK  I +  E+T       DD
Sbjct: 180 TPDHLDRYDHCMQNYVDAKMRILQNQEETDAFVYWNDD 217


>gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 26/263 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++      + +  T+  IG   N  G    + +     DF I E  
Sbjct: 121 IAIAGTHGKTTTTSLIASIYGQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL HL +P ++VIT I   H+  + G +E++     +    L   G   +  
Sbjct: 176 ES---DASFL-HL-QPMVSVITNIEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCI 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           D      L  +    G + + ++G+SK+AD+++  + Q +      V   QG+ +    +
Sbjct: 231 DSEVAAELIPR---FG-RPVITYGESKDADYRMSDFSQSANTCTFTVTNKQGECLTATLN 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H A N    + +           ++AL  F   EG G+R++        +G   L+
Sbjct: 287 MPGRHNALNATAAIAVAKDQNIANHAILEALQKF---EGIGRRFQHYGEFENERGNVMLV 343

Query: 343 DESYNANPASMKAAISVLSQISP 365
           D+ Y  +P+ + A I+ + +  P
Sbjct: 344 DD-YGHHPSEVAATIAAVREGWP 365


>gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
 gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
          Length = 459

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 27/288 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++LG L        + +    IA++G+ GKTTT  ML+  L +        G 
Sbjct: 94  IPMLSRAELLGQL--------MTNYDVPIAVSGTHGKTTTTSMLSHILLA--------GD 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            +  I V   L  +  ++  G   L ++   E         P I+VI  I   HL  F  
Sbjct: 138 LDPTISVGGILKAIGGNIKVGTSGLFVTEACEYTNSFLHFFPKISVILNIDEDHLDFFKD 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +++I ++       L   GT+ +N +    E L+  +  L  + + ++G   + ++    
Sbjct: 198 LDDIRNSFRRFAALLPADGTLVINGE---IENLEEITAGLSCRVV-TYGTEHSMNYSASN 253

Query: 263 WKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                +  +  ++   G+ ME V   + G H   N L  + +  IL+  +    + L  F
Sbjct: 254 ISHNEKGDASFDLVKNGEFMERVQLSVNGDHNVSNALAAVAVADILSVPLADICRGLKEF 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               G  +R+     +  FT+ID+ Y  +P  +KA+++  +   PH E
Sbjct: 314 ---AGTNRRFEHKGEKNGFTVIDD-YAHHPTEIKASLTAAAHY-PHKE 356


>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 503

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 114/308 (37%), Gaps = 41/308 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL +I+  ++       + GIS  S  +     F  ++G   DGH ++  A Q 
Sbjct: 1   MMKLKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGK 119
           GA   +V          + IP + V +   AL KL   AR       K  +I IT + GK
Sbjct: 61  GAVAAIVEELQ----EDVDIPQYVVSNSRIALAKL--GARFYGDPSQKMKLIGITATNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDF-----GIFELGMSH- 171
           TTT  M+   L    +    IG+    I    T A +  P  +D       + + G+SH 
Sbjct: 115 TTTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHV 174

Query: 172 ---LGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +      TH V      I  +  I+  H+ +    E+   AK+ +     +     L
Sbjct: 175 TMEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNASENSIAVL 234

Query: 226 N----YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-------------QCSE 268
           N    Y  S  +  KA+    G+ +       K+ D    + K             Q  E
Sbjct: 235 NLDCPYSASLVDQTKAEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQQYE 294

Query: 269 QSWMEVQL 276
            S  EVQL
Sbjct: 295 PSEFEVQL 302


>gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           ATCC 13124]
 gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC
           13124]
          Length = 466

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 123 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 168

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 169 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 224

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 225 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 277

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+  
Sbjct: 278 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 330

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 331 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 383


>gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 449

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 12/141 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
           L S+A II +TG+ GKTT   ++       + T    G  + +IG V   +A+     D+
Sbjct: 107 LISEAPIIGVTGTNGKTTVTSLIGDMFQKSRVT----GKLSGNIGYVASKVAQEVTADDY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       +PHIA+IT I  AHL     ++   +AK +I++   +   
Sbjct: 163 LVTELSSFQLLGI----DQYKPHIAIITNIYSAHLDYHETLDNYQNAKKQIYKNQTENDY 218

Query: 223 IFLNYDDSFF---ELLKAKSH 240
           +  NY        E L+AK++
Sbjct: 219 LICNYHQRHLIESETLRAKTY 239


>gi|51599068|ref|YP_073256.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia garinii PBi]
 gi|59798192|sp|Q65ZV7|MURC_BORGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51573639|gb|AAU07664.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBi]
          Length = 468

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 28/216 (12%)

Query: 54  HDFILHAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           ++F L  + +   L+V ++        ++     L+IP+    +VLG L++         
Sbjct: 62  YEFSLKELDRSFDLIVYSSAYDKDGLQVLLEAKELNIPILSYSEVLGELSR--------- 112

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           K   I I GS GKTTT   L I    +       +GS     G    +A        GI 
Sbjct: 113 KHYSIGIAGSHGKTTTTAFLGILFDKLGLNPNVIVGSSVKDFGDNSAIA--------GIS 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           ++ +    E +       P++ ++T +   H+  F   E +  A  +    L+K G + +
Sbjct: 165 DIFIVETCEYKKHFLYFSPNMLILTNVDYEHVDFFKNYEALEDAFLQYINNLKKNGILII 224

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQL 260
           N DD    LLK KS        I+SFG    ++FQ+
Sbjct: 225 NSDDK--NLLKIKSQINREDINIFSFGSRDLSNFQI 258


>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11133470|sp|P57313|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
           [imported] - Buchnera sp. (strain APS)
 gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 34/255 (13%)

Query: 110 IIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II+ITG+ GK+T   M+  IA  S  K +        +IGVP+ L  +  + D  I EL 
Sbjct: 108 IISITGTNGKSTVATMIEKIAKKSGYKAF-----LGGNIGVPV-LEILDKEADLYIIELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L      T  ++  IAVI  I+  H++ + +G ++  + K  ++   E      +N 
Sbjct: 162 SFQLEN----TFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAE---ICIINS 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EV 283
           +D   ++ K+  H+   K I SFG ++ +D+++     CS+ +   +  + K +    E+
Sbjct: 215 ND---KIEKSLIHSKNKKWI-SFGTNR-SDYRI-----CSKSNDPILFFKNKKILNTSEI 264

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + +G  YH   N+L++L I   +    + AI  L  F        R++   N+     I+
Sbjct: 265 LLYG--YHNYNNILVSLAISDAMQFPRNDAINVLKSF---SNLPHRFQIIKNEKGVRWIN 319

Query: 344 ESYNANPASMKAAIS 358
           +S + N  S + A++
Sbjct: 320 DSKSTNVNSTQVALN 334


>gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
 gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 156/377 (41%), Gaps = 61/377 (16%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  GV   L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGVNAKLGQ-------GEYIVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P +AV+T I   H+  +      +  A  +    L   G   L  
Sbjct: 160 EADESDASFLNLL--PVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCV 217

Query: 228 DDSFFELLKAKSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ------L 276
           DD+            GI     K I S+G +++A  Q+R     +E + M         +
Sbjct: 218 DDAAVR---------GIMPFVSKPITSYGFAEDA--QVRAIDVRAEGAQMHFTVLRRNGV 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR---- 331
           Q   + V  +  G H  QN L  + + + L  D D AI +AL+ F    G G+R++    
Sbjct: 267 QLPPLAVTLNLPGRHNVQNALAAIAVATELNVD-DAAIQRALAGF---TGVGRRFQRYGE 322

Query: 332 -CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A + G FTLID+ Y  +P  M A ++      P   GRR+ VL         ++    
Sbjct: 323 VAAHHGGHFTLIDD-YGHHPVEMAATLAAARGAFP---GRRL-VLAFQPHRYTRTRDLFE 377

Query: 391 DLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQS 439
           D  +VL   +   ++ V+ +G   L   D  +L R++ V       + E +  L   I  
Sbjct: 378 DFVKVLGEADAVLLAEVYAAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILE 437

Query: 440 SLVDGDVVVVKSSNSCG 456
              +GDV++   + S G
Sbjct: 438 MAREGDVLICMGAGSIG 454


>gi|256027427|ref|ZP_05441261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D11]
 gi|289765390|ref|ZP_06524768.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
 gi|289716945|gb|EFD80957.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
          Length = 432

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 102/253 (40%), Gaps = 23/253 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIF 165
           K  IIAITG+ GK+TT    T  +S +        +Y  +IG  L+   +   D+DF   
Sbjct: 90  KTKIIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFISL 145

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +      
Sbjct: 146 ELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E    ++  +  K I S  K K AD  +   K    +  + + +   S++   
Sbjct: 202 NIDDVEIE---KRAKQVKAKRI-SVSKFKKADIFVENDKIYHGKDSI-IDVDKLSLK--- 253

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +    IL  D +   + L +  P E R + +      G    I++S
Sbjct: 254 ---GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF---FTYGKLKFINDS 307

Query: 346 YNANPASMKAAIS 358
              N  S K AI 
Sbjct: 308 KATNVDSTKFAIE 320


>gi|182435249|ref|YP_001822968.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|229620435|sp|B1VWF9|MURC_STRGG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|178463765|dbj|BAG18285.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 466

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 21/203 (10%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKT 136
           G L++PV    D L +L        LR+    IA+ G+ GKTTT  ML +ALSS+    +
Sbjct: 90  GELAVPVVHRSDALASLMN-----GLRA----IAVAGTHGKTTTTSMLAVALSSLGLAPS 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           YA  G        P T      +   G  ++ ++   E         P +A++  +   H
Sbjct: 141 YAIGGDLEG----PGT------NATHGEGDIFVAEADESDRSFQKYDPEVAIVLNVELDH 190

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            +N++ ++EI  +       +   GT+ ++ D      L  +   L    + ++G +++A
Sbjct: 191 HANYASMDEIYDSFETFVGKIVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDA 250

Query: 257 DFQLRKWKQCSEQSWMEVQLQGK 279
           D ++ K       S + V L GK
Sbjct: 251 DVRVHKVTPRGLTSEVTVLLNGK 273


>gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
          Length = 496

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 153/384 (39%), Gaps = 46/384 (11%)

Query: 22  VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76
           +PQ     ++G+ +DSR + P +AF A+      G  FI  A  +GA  ++         
Sbjct: 14  IPQARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFEPPAPQGV 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132
           S+   +I V G+   LGA+     A R     S+A T++ +TG+ GKT+T ++L  A   
Sbjct: 74  SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 128

Query: 133 IK-KTYAC----IGSYNNHI-----GVPL------TLARMPVDVDFGI-FELGMSHLGEI 175
           +  ++  C    +G Y+  +       PL       L ++  D    +  E+    L + 
Sbjct: 129 LGVRSATCGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHALDQG 188

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE 233
           R     V   + V T +   HL     +E   +AKA +F  +G++      +N DD  F 
Sbjct: 189 R--VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQAA---VINVDD-LFG 242

Query: 234 LLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           L      A G++ +  S     +AD   +      +    ++ +      V    +G   
Sbjct: 243 LRLLHGLAKGVRRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 302

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L   G++  L   +      LS   P  GR  R      Q    +    Y   P +
Sbjct: 303 VDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVV---DYAHTPDA 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +     VLS +S H  GR I V G
Sbjct: 360 LG---QVLSSLSSHVCGRLICVFG 380


>gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 315

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 27/227 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++ SR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R     P+ V   + +L  +     R +   V  H            
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            + V+T ++  HL     +E  A+AKA++F          +N DD+F
Sbjct: 192 DVGVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAF 237


>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
 gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
          Length = 478

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 58/385 (15%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++L  I    +     G  +G+  DSR +   + F A++G  +DGH FI  AV+ GA  V
Sbjct: 3   EILNGIDYKILKKFETGPFSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAV 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKE 124
           + + ++  +     I V  +   LG      +A+      + K  I+ ITG+ GKTTT  
Sbjct: 63  IGSKEIEVNHDITYIVVKNLRQKLG-----VIASNFYKWPQKKLEIVGITGTNGKTTTTY 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV---DVDFGIFELGM--- 169
           +L   L   K   + IG+    +G          P +L  + +    VD GI  L M   
Sbjct: 118 LLEQILGEDK--VSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIMEVS 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH  E+  +  ++   +   T + P HL     +EE  SAK ++F   +       N DD
Sbjct: 176 SHALEMGRV-EMIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENTVFNTDD 234

Query: 230 SFFELL---------KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            + + L           +S  L    I    K++  +   +++     Q  + ++LQGK 
Sbjct: 235 FYGKRLFDEFGGISYGIESGDLNASMISHSLKTQEIELSFKEF-----QKKINIKLQGK- 288

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFF 339
                         N+L  +G+   L   ++     L       G   R+ C    Q F 
Sbjct: 289 ----------FNVYNLLTAVGVAIRLGLSLEEITDRLEKLESAPG---RFECIEAGQNFM 335

Query: 340 TLIDESYNANPASMKAAISVLSQIS 364
            ++D ++ A+  +++  +S L++I 
Sbjct: 336 VVVDYAHTAD--ALENILSALNEIK 358


>gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 512

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 149/382 (39%), Gaps = 50/382 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN------TDMVASIGS 80
           +  +S+DSR    + AF A+KG   DG+ +I   + KG  L++ +      +   +S+  
Sbjct: 23  IESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGTKLILSDKLPRQSSIATSSVAE 82

Query: 81  LSIP-VFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +P +F V+++   L+ LA      +    II ITG+ GKT+    +      I +   
Sbjct: 83  GELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTNGKTSISSYIAQLQKLIGQKSL 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------- 185
            +G+  N I  P         +D       +S+    + L   V  H             
Sbjct: 143 LLGTNGNGI-YPDLQESTHTTLDILSLYQTISYYKNYQNLVMEVSSHSLDQKRTEGLDFD 201

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----- 240
           IAV + ++  HL     ++    AKA++F+         +N DD + + L   ++     
Sbjct: 202 IAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ-FRSLKKAVINIDDEYGQKLWENTNKSSFR 260

Query: 241 ------------ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                          I+ I    KS+ AD  +      + Q+  ++ +  K M      +
Sbjct: 261 QAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSIENMQTSFDLYISQKYMGTYQTSL 320

Query: 289 GYHMAQNMLMTLGIVSILTADVDTA---IKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              + +  LM LG+      D  T    ++ +S   P +GR +    AL  G   +ID  
Sbjct: 321 ---VGEFNLMNLGLSLAALDDSSTREQLLENISKLKPVKGRME--VIALVNGAKIIID-- 373

Query: 346 YNANPASMKAAISVLSQISPHG 367
           Y   P +++ A+  L    P+ 
Sbjct: 374 YAHTPDALEKALQTLVNYHPNN 395


>gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptothrix cholodnii SP-6]
 gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii
           SP-6]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 149/389 (38%), Gaps = 55/389 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSRS+   EAF A  G   DG  ++  A+  GA   ++  D  A+        FG D
Sbjct: 26  LRTDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAAA--------FGFD 77

Query: 90  D-VLGALNKLAVA---------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           D  + AL  L  A              +  +IA +G+ GKT+T      ALS   +    
Sbjct: 78  DERIAALPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGV 137

Query: 140 IGSYN--------------NHIGV----PLTLARMP---VDVDFGIFELGMSHLGEIRFL 178
           IG+                +  G+    PLTL R      D  F    +  S +G +   
Sbjct: 138 IGTLGVGEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHR 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLK 236
                  +A+ T   P HL     +     AK  +F+  GL+      +N DD+   +L 
Sbjct: 198 LDAAPIRVALYTNFTPDHLDYHGDMVAYWLAKRALFDWPGLQAAA---INVDDAQGAVLA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVH-HGIGYHMAQ 294
            +  A G   ++++   ++A  +LR          +   L +G++   VH H IG + A 
Sbjct: 255 DELAARGDLDLWTYALHRDA--RLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNAS 312

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-------TLIDESYN 347
           N+L  +G +  L   +  A    + F    GR  R R A   G           +   Y 
Sbjct: 313 NVLAVIGGLRALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYA 372

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P ++  A+S L  ++    GR + V G
Sbjct: 373 HTPDALDKALSALRPVAHAQGGRLVCVFG 401


>gi|149181058|ref|ZP_01859558.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
 gi|148851145|gb|EDL65295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
          Length = 443

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 124/312 (39%), Gaps = 44/312 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  +L+  +   K T   IG             +   D ++ +FE  
Sbjct: 109 TSVAVTGAHGKTSTTGLLSHVIRGAKPTSYLIGD---------GTGKGEKDAEYFVFE-- 157

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL++   P  A++T I   H   F+ ++++  A  E+   ++    I   
Sbjct: 158 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFANVDDVFQAFQEM--AMQVKKGIIAC 210

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD   + ++AK   L       +G ++  DFQ R   +  E +  +V ++ +       
Sbjct: 211 GDDEHLQKIQAKVPVL------FYGFAEENDFQARNVNKTPEGTTFDVFVRNEFFATFSI 264

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G G H   N L  + +      D +   + L+ F   +G  +R+      G   LID+ 
Sbjct: 265 PGYGDHSIMNALSVIALCHYEDIDTEIVKERLTSF---QGVKRRF-SEKKIGEQILIDD- 319

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +K  I    Q            PH   R    L +  +   LS++  + L E+
Sbjct: 320 YAHHPTEIKVTIEAARQKFPDREIIAVFQPHTFTRTQTFLNEFAD--SLSEADQVYLCEI 377

Query: 396 LSLYNISHVWLS 407
                 +H  LS
Sbjct: 378 FGSARENHGKLS 389


>gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
 gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 461

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 161/392 (41%), Gaps = 44/392 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N +++ ++ +L IP+    ++LG L        +++  T IA++G+ GKTTT  M++  L
Sbjct: 83  NPELIEAV-ALKIPMLTRAELLGQL--------MKNYDTPIAVSGTHGKTTTTSMISHIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                     G  +  I V   L  +  ++  G     ++   E         P I+VI 
Sbjct: 134 LE--------GDLDPTISVGGILKAIGGNIRVGNSGTFITEACEYTNSFLHFFPKISVIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYS 249
            I   HL  F  +E+I  +  +  E L + GT+ +N +   + E+ +  S       + +
Sbjct: 186 NIEEDHLDFFKDLEDIRHSFHQFAELLPEDGTLIINAEIKDYAEIYEGLS-----CNVVT 240

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306
           +G +   D+  +      E   +   L  +G+  + +   + G H   N L  + +  IL
Sbjct: 241 YGTNGCFDYSAKNITY-DENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIAVADIL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAI----- 357
              +D   + L  F    G  +R+         T+ID+ Y  +P    A++KAA      
Sbjct: 300 GLSIDITKRGLLSF---TGTDRRFEYKGEFNGVTVIDD-YAHHPTEILATLKAAQHSLHN 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           SV     PH   R  A   +  E   LS + H+ LA++ +      + +S   +   K+ 
Sbjct: 356 SVWCVFQPHTYTRTKAFFHEFAEA--LSHADHLVLADIFAARETDTLGISSADL--AKET 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  HY  +   +  F++ +   GD+++ 
Sbjct: 412 EKLGTDTHYFPSFAQIEAFLKENCRPGDLLIT 443


>gi|314933359|ref|ZP_07840724.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
 gi|313653509|gb|EFS17266.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
          Length = 449

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L S+A II +TG+ GKTT    +T  +  + K     G  + +IG   +        D  
Sbjct: 107 LISEAPIIGVTGTNGKTT----VTSLIGDMFKKSIITGRLSGNIGYVASKVAQEAKAD-- 160

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + L  +  +PHIA+IT I  AHL     +E   +AK +I++   +   
Sbjct: 161 --EYLITELSSFQLLGINEYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218

Query: 223 IFLNYDDSFF---ELLKAKS 239
           +  NY        E LKAK+
Sbjct: 219 LICNYHQRHLIETENLKAKT 238


>gi|220918994|ref|YP_002494298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956848|gb|ACL67232.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 20/160 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--- 152
            ++ +AAR      I+ ITG+ GK+TT  +    L+  ++T+        ++G PL+   
Sbjct: 99  GEVELAARFLGGLPIVGITGTNGKSTTTALTGALLARDRRTF-----VGGNLGTPLSELV 153

Query: 153 LARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           L+  P D    + EL    L  I RF     R  +A +  + P HL  +  ++  A+AKA
Sbjct: 154 LSGEPADA--AVVELSSFQLEGIERF-----RARVAAVLNVTPDHLDRYPDVDAYAAAKA 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            +F   +       N  D     +   S A     +++FG
Sbjct: 207 RLFATQQPDDVAVANARDPRALAMAGASRA----DLHTFG 242


>gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
 gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
          Length = 506

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 29/229 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++IDSR I   + F A+ G   DG  FI  A+  GA  V+   D +A+ G +     
Sbjct: 32  VANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSIANHGDIVEQDG 91

Query: 87  GVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEML-------------- 126
            V      LN+   A+A R      ++  ++A+TG+ GKTT  ++L              
Sbjct: 92  IVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQWANLIGYNAGVM 151

Query: 127 -TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHL--GEIRFLTHLV 182
            T     +      + +  N I +P  L  +     DF   E+    L  G ++ L  + 
Sbjct: 152 GTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLVQGRVKALQFVA 211

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               ++ T ++  HL     +   A AK  +F    + G   +N DD  
Sbjct: 212 ----SIFTNLSRDHLDYHGDMANYADAKKCLFTE-HQAGIPVINADDDI 255


>gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC
           2396]
 gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 151/368 (41%), Gaps = 46/368 (12%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI G+ GKTTT  ++   L  + +  T+  IG   N  G    L           + + 
Sbjct: 117 VAIAGTHGKTTTTSLMASVLGEAGLDPTF-VIGGRLNSAGTNAKLG-------ASRYLVA 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  + G  E++     +    L   G   + Y
Sbjct: 169 EADESDASFL-HLT-PMVSVVTNIDADHMHTYGGDFEKLKQTFVDFLHNLPFYGVAVMCY 226

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVH 285
           DD     +  +      +++ ++G ++ AD +     Q   Q+    +  G    + +  
Sbjct: 227 DDPVVREIIPRVG----RSVITYGFNEKADVRAVDIAQQGMQTSFTAKRPGGHPDLRISL 282

Query: 286 HGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339
           +  G H   N+L  L ++++ T +   D AI  +S  +  +G G+R++      +++G  
Sbjct: 283 NMPGKH---NVLNALAVIAVATDEGIADEAI--VSALNKFQGVGRRFQVYGNYPVDEGSV 337

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+D+ Y  +P  + A I  +    P  E R +AV          ++  + D  +VLS  
Sbjct: 338 MLVDD-YGHHPREVDATIKAIRDGWP--EKRLVAVF--QPHRYTRTRDLYEDFVQVLSKV 392

Query: 400 NI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVV 448
           ++     V+ +G   +   D       +     +D +F+         +   L DGD+++
Sbjct: 393 DVLVLMDVYPAGEKEIPGADGRSLCRSIRQRGQLDPIFIERGQDVKAVLSGVLQDGDLLL 452

Query: 449 VKSSNSCG 456
            + +   G
Sbjct: 453 TQGAGDIG 460


>gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
 gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
          Length = 471

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 31/252 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTY---ACIGSY--NNHIGVPLTLA 154
           A+L      IAI G+ GKTTT  M+  AL  I    T+     + +Y  N H G      
Sbjct: 102 AQLGVGKKTIAIAGTHGKTTTSSMVASALDGIGADPTFLIGGIVRAYHTNAHSG------ 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +  + + E   S     +  T+L  P+  ++T +   HL +++ +EEI +   E  
Sbjct: 156 ----EGAYYVVEADESD----KSFTYL-DPYAVLVTNVEADHLDHYNDLEEIHAKFTEFM 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G + +  DD     L A +     K + ++G ++ AD  +  W      S   +
Sbjct: 207 SQVPDDGLLVVCADDEVLVSLAASTG----KRMVTYGSAEGADAHIESWAPAGVGSTFTL 262

Query: 275 QLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +L   ++    V    G H   N   TL ++  +  D     ++LS F    G  +R+  
Sbjct: 263 KLPDGTLVEGSVKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNF---AGVRRRFDL 319

Query: 333 ALNQGFFTLIDE 344
                  T++D+
Sbjct: 320 VGEADGVTIVDD 331


>gi|224476830|ref|YP_002634436.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254766022|sp|B9DN57|MURC_STACT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222421437|emb|CAL28251.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 32/261 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GKT+T  +L+  ++  K+T   IG     +G+P +        +F  FE    
Sbjct: 104 IAVTGAHGKTSTTGLLSHVMNGDKRTSFLIGD-GTGLGIPQS--------EFFAFE---- 150

Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E R  FL++   P  A++T I   H   F  ++++ +A  E+   ++K G +    D
Sbjct: 151 -ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKDVDDVTNAFQEMAYNVKK-GIVAWGKD 206

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           +    L K K+       IY +G  KN D      +     +  +V + GK   + +   
Sbjct: 207 E---HLRKIKADV----PIYYYGLEKNEDIYADNIQITEHGTQFDVYIDGKYFDQFLSPQ 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D++   +AL  F   + R    +   NQ    L+D+ Y 
Sbjct: 260 YGDHNILNTLAVIMVCHLEGLDIENIKEALETFGGVKRRFNETKLH-NQ---VLVDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGE 368
            +P  + A I    +  P+ E
Sbjct: 315 HHPREINATIETARKKYPNKE 335


>gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
 gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
          Length = 518

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 42/252 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           D+RS+A  +AFFA      D   FI  A+++GA  V+V  +     +     L++P    
Sbjct: 34  DTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQPEGFSGAINPSNMLAVP---- 89

Query: 89  DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                ALN+LA  +A+   +  +     + ITG+ GKT+  + ++ AL+++    A IG+
Sbjct: 90  -----ALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184
                     H G      P     +    D G   + M       H G +         
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF---- 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV T +   HL      E   +AKA +F   E    + +N DD+    L A +     
Sbjct: 201 DIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTQGHAR 259

Query: 245 KTIYSFGKSKNA 256
              Y     + A
Sbjct: 260 TIAYGLDSGQGA 271


>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 29/242 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           ++ I+ H  G      V GIS +S+ I     FFAIKG   DGH+FI  A +  A   VV
Sbjct: 14  IEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFIQEAFKNKAIGAVV 73

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
             D V  + ++      V   L AL +  L        K  + ++TG+ GK+T   +L+ 
Sbjct: 74  EKD-VDYVNTIK-----VRSTLQALRETSLVFYDYPFKKLFLGSVTGTNGKSTITWILSH 127

Query: 129 ALSSIKKTYACIGSYN-NHIG----------------VPLTLARMPVDVDFGIFELGMSH 171
           A++ +      +G+    H G                  L    + +D+ +G  E+    
Sbjct: 128 AVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQLDMKYGFLEVSSHA 187

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDD 229
           L   R   H ++   A+ T +A  H+     +E+    K  +F    L++   + +N DD
Sbjct: 188 LKLGRL--HGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTYLKENAFVVINIDD 245

Query: 230 SF 231
            +
Sbjct: 246 LY 247


>gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
 gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 21/201 (10%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYA 138
           L+IPV    D L +L        LR+    IA+ G+ GKTTT  ML +ALSS+    +YA
Sbjct: 92  LAIPVVHRSDALASLMN-----GLRA----IAVAGTHGKTTTTSMLAVALSSLSLAPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G        P T      +   G  ++ ++   E         P +A++  +   H +
Sbjct: 143 IGGDLEG----PGT------NATHGEGDIFVAEADESDRSFQKYDPEVAIVLNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           N++ ++EI  +       +   GT+ ++ D      L  +   L    + ++G +++AD 
Sbjct: 193 NYASMDEIYDSFETFVGKVVPGGTLVISADQPGAVELTRRVRDLADLKVVTYGSAEDADV 252

Query: 259 QLRKWKQCSEQSWMEVQLQGK 279
           ++ K       S + V L GK
Sbjct: 253 RVHKVTPRGLTSEVTVLLNGK 273


>gi|222151664|ref|YP_002560820.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
 gi|254766009|sp|B9E7F6|MURC_MACCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222120789|dbj|BAH18124.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
          Length = 431

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 42/298 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+ T +A+TGS GKT+T  +L+  ++  KKT   IG     +G+P +        ++  F
Sbjct: 99  SQYTSVAVTGSHGKTSTTGLLSHVMNGDKKTSYLIGD-GTGMGMPGS--------EYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A+IT I   H   F+ + ++ +A  E+ + ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--SPDYAIITNIDFDHPDYFASMSDVFNAFQEMTKKVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD     ++A         IY +G  ++     +  K   + +  EV + G+  + 
Sbjct: 201 VACGDDENLRDIEADI------PIYYYGFKEDNKVVAKNMKTTPQGTQFEVYIDGELFDT 254

Query: 284 -VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V    G H   N L  + I  +   D      ALS F    G  KR      Q    LI
Sbjct: 255 FVTPMYGDHQVLNALAVITICHLEGLDNAAVKHALSTF----GGVKRRFSEKIQDEQILI 310

Query: 343 DESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           D+ Y  +P  +KA +           V++   PH   R  A L D     +L+   ++
Sbjct: 311 DD-YAHHPTEIKATLQSAHLKYPERKVIAIFQPHTFSRTSAFLEDFANSLKLADKVYL 367


>gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
 gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
          Length = 471

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE + +   +    +   G      DDS  + L  K   +  +
Sbjct: 187 IAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGK---ITDR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + ++G +  AD +          +  +V LQ + + +V   +   G H   N L  + +
Sbjct: 244 RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEGLTIVDCALPMPGDHNVSNALSAIAV 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F   +G G+R+         T+ID+ Y  +P  + A +    Q
Sbjct: 304 ARYLGMKTEEIRTALTAF---KGVGRRFTRVGEVDGVTIIDD-YGHHPTEITAVLKAARQ 359

Query: 363 ISPHGEGRRIAV 374
            S   EGR IAV
Sbjct: 360 AS---EGRIIAV 368


>gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
 gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+  
Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374


>gi|261337518|ref|ZP_05965402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277918|gb|EFA23772.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 27/257 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  I ITG+ GKT+T EM++  L++   T   +G    +IG  L+LA +  + D 
Sbjct: 96  RTGKPAPWIGITGTNGKTSTTEMVSTMLTACGYTAPAVG----NIGNALSLAAVDPNNDV 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      T  +    A IT I   HL    GIE  A+ K++++   ++   
Sbjct: 152 LCVELSSFQL----HFTDSMALDCAAITNIGADHLDWHGGIERYAADKSKVYAHAQQ--A 205

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           I  N  D+    L   + A   +  ++    ++    +           M        M 
Sbjct: 206 IVYNAQDARVRDLAFAADASCARIGFTLDVPQDGMIGVADGWIVDRAGLMGSDPATPVMV 265

Query: 282 ----EVVH----HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +  H     G  Y H+  + +  L  V    AD   A++AL  F P    G R  C
Sbjct: 266 APVADFTHLREPDGTVYPHLLADAMTALAWVLSFGADAAPALEALKTFKPG---GHRIEC 322

Query: 333 AL----NQGFFTLIDES 345
                 ++G    ID+S
Sbjct: 323 VAQYTSDEGAIRFIDDS 339


>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
 gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
          Length = 494

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 150/393 (38%), Gaps = 51/393 (12%)

Query: 14  IQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           +QG  I  VP  F   ++G+  DSR +   +AF A+ G       +I  A+  GA ++++
Sbjct: 10  LQG--IAPVPSVFDVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATVILL 67

Query: 71  NT----DMVASIGSLSIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTK 123
            +    +     G L +PV  +   LG +        + RLR    +I +TG+ GKT+  
Sbjct: 68  ESAQPDECYEHEGVLIVPVTALRAHLGKIADRFFEHPSQRLR----LIGVTGTNGKTSVS 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTL---ARMPVDV---------------DFGIF 165
             +   L         IG+     G+P  L   A    DV                    
Sbjct: 124 HYIATLLQETGTPCGVIGTLG--YGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAM 181

Query: 166 ELGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E+    L  G +  LT       AV T +   HL     ++   +AKA +F   E+    
Sbjct: 182 EVSSHALEQGRVDNLTMTG----AVFTNLTRDHLDYHGSMDAYGAAKARLFH-REELHFA 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N+DD F   L  K      +  YS  +++  +  L ++    +     V        V
Sbjct: 237 VINFDDPFGRQLYEKLDGKCDRVRYSLHEAQT-ELWLTEFAPSIDGFSASVDGLWGRFNV 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  +  V  L   V+   +A+    P  GR + +  A +     ++D
Sbjct: 296 SARVLGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPF--AGSNDVRVVVD 353

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++ +A++ L    PH  GR   V G
Sbjct: 354 --YAHTPDALNSALAAL---RPHVGGRLFCVFG 381


>gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae
           DSM 15829]
 gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
 gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
          Length = 493

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 23/193 (11%)

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           AC+G  ++H+           D  F + EL    L E    T L+ PH A++  I P H+
Sbjct: 151 ACLGEVDHHLA----------DTWF-VAELSSFQLAE----TKLLHPHAAILLNITPDHI 195

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                ++  A+AK  IF  L       ++ DD + + + ++    G+  +       + D
Sbjct: 196 EWHGSMQAYAAAKERIFANLTTDDLAIISRDDLYCKAIYSRLVERGLSPVCV---DTSQD 252

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSILTADVDTA 313
            +  +   CS+ S + V+L G +  ++        G H  QNML    +   +   VD  
Sbjct: 253 PKTLQAAYCSD-SMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASALALFIGVSVDAI 311

Query: 314 IKALSVFHPKEGR 326
            + L  F   E R
Sbjct: 312 RQVLQTFTTLEHR 324


>gi|82751329|ref|YP_417070.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           RF122]
 gi|82656860|emb|CAI81289.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus RF122]
          Length = 412

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 57  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 107

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 108 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 151

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    D+    L K ++       IY +G   + D
Sbjct: 152 DYFKDINDVFDAFQEMAHNVKK-GIIAWGDDE---HLCKIEADV----PIYYYGFKDSDD 203

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 204 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 263

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 264 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 318

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 319 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 346


>gi|304310316|ref|YP_003809914.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
 gi|301796049|emb|CBL44253.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
          Length = 442

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIF 165
           K  I+AITGS  K+T   ++   +    ++    G    +IGVP L + +     +F + 
Sbjct: 100 KTPILAITGSNAKSTVTTLMGEMVKGSGRSVVVGG----NIGVPVLDVLQEAQSAEFCVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T+ +R H+A I  I+P HL  +  ++E  +AK  I+     T     
Sbjct: 156 ELSSFQLE----TTYSLRAHVATILNISPDHLDRYPSMKEYTAAKHRIYRNARHT---VA 208

Query: 226 NYDDS 230
           N DDS
Sbjct: 209 NADDS 213


>gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10
           bacterium 'Dutch sediment']
          Length = 475

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 39/310 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+  + +IPV    ++L  L ++            +A+ G+ GKTTT  M+   L
Sbjct: 78  NPEIVAA-KAHAIPVIQRAEMLAELMRMKYG---------VAVAGTHGKTTTTSMVATVL 127

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +         IG   + +G    L R       G F +  +   +  FL   + P IAV+
Sbjct: 128 AKAGLDPTVVIGGRLDALGSNAKLGR-------GEFMVAEADESDGSFLK--LAPTIAVV 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+   HL  +  +++I     E    +   G+  L  D      L         K + S
Sbjct: 179 TTVDAEHLDYYRDLQQIKETFLEFINKVPFYGSAILCLDQEHIRDLLPMVQ----KRVVS 234

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI---VSI 305
           +G    AD            S  +V+ +G+ +  V   I G H   N L  + +   + I
Sbjct: 235 YGCHTQADLMAEGVSLTGLSSTFKVRFKGEPLGEVQLRIPGVHNVSNALAAMAVGLELDI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A + TA+   S      G  +R++   +     ++D+ Y  +PA ++A +    + + 
Sbjct: 295 EFAAIRTALGEFS------GVVRRFQVKGSPQDIMVVDD-YAHHPAEIQATL----KAAR 343

Query: 366 HGEGRRIAVL 375
            G GRR+ V+
Sbjct: 344 DGFGRRLIVI 353


>gi|282600178|ref|ZP_05973287.2| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
 gi|282566125|gb|EFB71660.1| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 68/325 (20%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T +      + +   L IPV    ++L  L       R R     IA+ G+
Sbjct: 62  ENASVVVVSTAISMDNPEIQAAKELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       I   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 113 HGKTTTTAM-------ISGIYAQAGLD-------------PTFVNGGLVKSAGTHARLGS 152

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +AV+T I   H+  + G  E +          L   G 
Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGR 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
             +  DD     L  K   +G + I ++G S++AD ++ K+ Q   Q +  +  +G   +
Sbjct: 212 AVMCIDDPVIRSLLPK---IG-RYITTYGFSEDADVRITKYTQKGNQGFFTIAREGMPEL 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335
            VV +  G H A N    + + +    D    + AL  F   +G G+R+    N      
Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEF---QGTGRRFDFLGNYALRNV 324

Query: 336 ---QGFFTLIDESYNANPASMKAAI 357
              +G   L+D+ Y  +P  + A I
Sbjct: 325 NGKEGEVMLVDD-YGHHPTEVDATI 348


>gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
 gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+  
Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374


>gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 143/380 (37%), Gaps = 59/380 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           VN I  DSR I   + F AI G   DGH +I   +  GA  +V             +P  
Sbjct: 24  VNKIEFDSRQIQVNDVFVAISGTVTDGHRYIDRVIDAGATTIVCEV----------LPEA 73

Query: 87  GVDDV----LGALNK-LA-VAARLRSKAT----IIAITGSVGKTTTKEML---------T 127
             DDV    +   NK LA +AA      +    +I +TG+ GKTT   +L          
Sbjct: 74  LKDDVTYIEVANSNKALAYMAANFYEHPSENLKLIGVTGTNGKTTVSSLLYQLFKKAGYK 133

Query: 128 IALSSIKKTYACIGSYNNHIGVP--LTLARM-----PVDVDFGIFELGMSHLGEIRFLTH 180
           + L S  K      +Y      P  LT+ R         V+F   E+    + + R  T 
Sbjct: 134 VGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQMNDEGVEFCFMEVSSHGIHQSR--TE 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
            +R    + T ++  HL       E    K   F+ L K      N DD    +  +  +
Sbjct: 192 GLRFTGGIFTNLSHDHLDYHDTFAEYRDVKKLFFDQLPKDAFALSNMDDKNGLAMLQNTQ 251

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           AK +   +K          AD++     Q  E  +  + L+    E+    IG   A N+
Sbjct: 252 AKKYTYALKNY--------ADYR----AQILENEFSGLLLKVNDSELWTRLIGSFNAYNI 299

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L   G   +L  + D  ++ +S      GR + +    ++    ++D  Y   P ++K  
Sbjct: 300 LAIYGTAELLGLEKDEILRLISELENVSGRFQYFIS--DEKITAVVD--YAHTPDALKNV 355

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  ++ I    E   I V+G
Sbjct: 356 LETINNIRTKNE-ELITVVG 374


>gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
 gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
 gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272
           G I  N DD    E+L+ AK + L      ++G + N D Q R      K C+  +    
Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +L   S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+  
Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              +   T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374


>gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 769

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 51/381 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           + GI  DSR ++  + F    G   DGH ++  A ++GA  VV +   D+  ++G  ++ 
Sbjct: 265 ITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 324

Query: 85  VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KT 136
           +  V+D    L  LA A          +I I G+ GKTTT  ++     ++        T
Sbjct: 325 I--VEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNGKTTTAYLIRAMYEAMGLRTGMLST 382

Query: 137 YACIGSYNNHIGVPLT----------LARM------PVDVDFGIFELGMSHLGEIRFLTH 180
            A      N +  P T          +A+M       V ++     L +    E+ F   
Sbjct: 383 VAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEAVVMEASSHGLALGRCNEVDF--- 439

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAK 238
                IAV T +   H+      E+  +AKA++F  +         +N DD       A+
Sbjct: 440 ----DIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQ 495

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +   +  +    ++K+AD    K++    ++ + VQ     +E+    +G H   N+L 
Sbjct: 496 GNP-DVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNILA 554

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKA 355
            + +   + A ++  ++ +       G     RC L    Q F  ++D ++  +  S   
Sbjct: 555 AVAVGIAVGAPLEDIVRGIEEIDAVPG-----RCELIDEEQAFGVIVDYAHTPDALS--- 606

Query: 356 AISVLSQISPHGEGRRIAVLG 376
              +L  +   G  R I V G
Sbjct: 607 --RLLDSVRELGARRIITVFG 625


>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
 gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
          Length = 495

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 149/380 (39%), Gaps = 54/380 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+ +DSR + P + +  + G + DGHDF   A+ +GA  +     +V  I  L IP 
Sbjct: 29  LIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAAL-----LVERILPLDIPQ 83

Query: 86  FGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             V  V   +  LA       AA+L     ++ +TG+ GKTT   ++    +   K    
Sbjct: 84  LQVKKVREVMGNLAANLYDHPAAKLE----VVGVTGTNGKTTITYLVESIAAGEGKKVGL 139

Query: 140 IGSYNNHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           IG+    I G  L   R  P  +D       M   G ++     V  H            
Sbjct: 140 IGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEG-VQLAVMEVSSHALVFGRVTGCEF 198

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKS 239
              + + +   HL     +EE   AKA++F GL      K G +  N DD   E L   S
Sbjct: 199 DAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVV--NGDDPAAETLIRLS 256

Query: 240 HALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A     + ++G + +  D++       ++     V+ +G++ +V +   G     N L 
Sbjct: 257 AA----PVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGMFSVYNALA 312

Query: 299 TL--GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
               G+ S  +       +AL+      GR +  R  + Q F  ++D  Y   P  ++  
Sbjct: 313 AFAWGVESGRSP--GQVREALAAVQGVPGRFESVR--MGQPFQIIVD--YAHTPDGLENV 366

Query: 357 ISVLSQISPHGEGRRIAVLG 376
                + +   +GR I V G
Sbjct: 367 CRTAQEFT---QGRLITVFG 383


>gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
 gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +     +PV
Sbjct: 34  LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 94  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153


>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 513

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 129/330 (39%), Gaps = 48/330 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+   ++++ P + F   KG    G  F+  A+ +GA  +V    +   I    IP  
Sbjct: 47  ITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPIIDKEIPFV 106

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +    L+  +  +AA      ++IAITG+ GKTT    ++  L+++ K  A IG+  
Sbjct: 107 WVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAAVIGT-- 164

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-FLTHLVRPHIA---------------- 187
             IG  L   +     +    EL      E+   L   VR  ++                
Sbjct: 165 --IGFYLDGEKQQTSYE----ELTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRL 218

Query: 188 --------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                   V   ++  HL +  G+E    AK  + +  +K   + LN DD+F        
Sbjct: 219 DHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVLNGDDNF-------C 268

Query: 240 HALGI---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++GI   K   SFG   + D  ++   +   ++ + +Q       +    +G +  QN 
Sbjct: 269 RSVGIYDKKKSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIIEIPFVGKYHVQNT 328

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  L  V  L   +D  ++ +      EGR
Sbjct: 329 VAALMAVWRLGTPMDDIVEHMWSLRLPEGR 358


>gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           MC0-3]
 gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 35/304 (11%)

Query: 103 RLRSKATIIAITGSVGKTT----TKEMLTIALSSIKKTYACIGS--YNNHIGVPLT--LA 154
           + +    + A+TG+ GKT+     +++    ++SI     C+ +   +N +  P    L 
Sbjct: 132 QFKQPKYVAAVTGTNGKTSVVEFCRQIWQDNVASIGTLGTCVNNNRKDNSLTTPSADDLY 191

Query: 155 RMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               D++    E   L  S  G  ++  H +R + A  T  +  HL     I+E   AK 
Sbjct: 192 STLRDINNKNVEHLALEASSHGIDQYRIHGLRLNAAAFTNFSQDHLDYHKSIDEYFEAKK 251

Query: 212 EIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +F E L K  T  LN D   +  L   +   G K I ++GK KN+D  L K    +   
Sbjct: 252 RLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVI-TYGK-KNSDITLLKQIPTANGQ 309

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++ +Q+  +         G   A N+L  +GIV  +++ +D     +       GR ++ 
Sbjct: 310 YLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIV--ISSGMDYQRMCIDKLASPSGRMEKV 367

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMG 382
                   F  +D  Y   P+++K A+  L     H   + + V G           EMG
Sbjct: 368 NT------FAFVD--YAHTPSALKQALLSLKW---HFNKKIVLVFGCGGNRDQTKRAEMG 416

Query: 383 ELSQ 386
           +++Q
Sbjct: 417 KIAQ 420


>gi|33151978|ref|NP_873331.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus ducreyi
           35000HP]
 gi|38372292|sp|Q7VMY1|MURC_HAEDU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33148200|gb|AAP95720.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus ducreyi 35000HP]
          Length = 475

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 62/394 (15%)

Query: 56  FILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV      N   + +  S  IPV      +     LA   R R  
Sbjct: 67  FIGHQAENIAGASVVVVSSAIEENNPEITAAKSARIPV------IQRAQMLAEIMRFRHS 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IA+ G+ GKTTT  ML++  +   +  T+   G       N H+G    L     + 
Sbjct: 121 ---IAVAGTHGKTTTTAMLSMIYTEAGLDPTFVNGGLVKSAGKNAHLGASRYLIAEADES 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D     L               +P ++V+T I P H+  + G  E++ +   +    L  
Sbjct: 178 DASFLHL---------------QPMLSVVTNIEPDHMDTYGGDFEQMKTIYVKFLRNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278
            G   +  DD   +++   +  +G + + S+G + NAD+++  ++Q   Q  +  +    
Sbjct: 223 YGLAVMCADD---DVVMEIAPQVG-RQVISYGFNANADYRIENYQQTGFQGHYTVICPNN 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----AL 334
           + ++VV +  G+H A N    L +        D  + AL+ F   +G G+R+        
Sbjct: 279 ERLDVVLNVPGHHNALNATAALAVAKEEGIANDAILAALADF---QGAGRRFDPLGTFKR 335

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   LID+ Y  +P  +   I    Q   H   +RI ++            F  D   
Sbjct: 336 PNGTVMLIDD-YGHHPTEIAVTIKAARQGWQH---KRIVMIFQPHRYSRTRDLFD-DFVN 390

Query: 395 VLSLYNI---SHVWLSGFHVLALKD--ALPRSIH 423
           VLS  ++     V+ +G + +   D  AL RSI 
Sbjct: 391 VLSKVDVLIMLDVYAAGENAIVKADSKALCRSIR 424


>gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
 gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
          Length = 496

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 27/233 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSRS+ P + F A+ G   DG + I  A+ +GA  V         +    +P+
Sbjct: 18  LIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDVPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++  L+   +A R   + +    ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 78  IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           +        L   R+    P+ V   + +L     G  R +   V  H            
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDL---KKGGARAVAMEVSSHALEQGRVAALEF 192

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            IAV+T ++  HL     +E   +AKA++F          +N DD F   L A
Sbjct: 193 DIAVMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDDFGRRLAA 244


>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
 gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
          Length = 467

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V ++T  + +     IP+ G         ++ +AAR      IIA TG+ GKTT    L 
Sbjct: 89  VPLDTPFMKAALKRQIPIIG---------EMELAAR-HVDVPIIAATGTNGKTTVTSFLG 138

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L   +     +G    +IG PLT   M  +  D+ + E+    L  I   T    P I
Sbjct: 139 RMLED-QGLAVFVGG---NIGTPLTAYLMGEMKADYLVVEISSFQLDTIERFT----PEI 190

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           ++I  I+P HL  ++       +K  IFE      T+ LN DD
Sbjct: 191 SIILNISPDHLDRYADYSAYIHSKLRIFENQGAGQTVILNDDD 233


>gi|224372892|ref|YP_002607264.1| UDP-N-acetylmuramate--L-alanine ligase [Nautilia profundicola AmH]
 gi|223589642|gb|ACM93378.1| UDP-N-acetylmuramate--alanine ligase [Nautilia profundicola AmH]
          Length = 434

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 32/248 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++++ G+ GK+TT  ML    S + KT A IG+ +   G  +         D+ +FE   
Sbjct: 102 VLSVCGAHGKSTTSSMLA---SILPKTNAIIGAESKDFGSNMRYT----GSDYLVFE--- 151

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  F+     P+IA++T   P H+  ++   ++     E F  L+K     +N DD
Sbjct: 152 SDESDGSFIDS--NPYIAIVTNTEPEHMEYYNHDLKLFYRHYEEF--LKKAKIRVVNADD 207

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            F + L      + IK       +KN  +++   K        +   + K+ +   +G G
Sbjct: 208 EFIKTLDFPMKKVSIKD------AKNIRYEIIDNKP-------KTVFEYKNYDFEVYGFG 254

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H+  + L+ +   + L   ++   K +  +H   G  KR+    N   F LID+ Y  +
Sbjct: 255 EHLVLDALLAIEAANELIT-MEEIQKNIKNYH---GIKKRFDILQNCENFILIDD-YGHH 309

Query: 350 PASMKAAI 357
           P  +KA +
Sbjct: 310 PTEIKATL 317


>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii RML369-C]
 gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
           RML369-C]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 20/139 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TG+ GK+TT  +++  LS     Y   G    +IGVP+  A+       G + L 
Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPVAG----NIGVPVLQAKASK----GGYVLE 156

Query: 169 MSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +S      F   LV+     IAV+  I P HL     +E   +AK++IF+ ++K     +
Sbjct: 157 LS-----SFQLDLVKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGII 211

Query: 226 NYDDSF----FELLKAKSH 240
           N D+ +    F  L+ K H
Sbjct: 212 NIDNDYCHEIFTNLQQKHH 230


>gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 21/203 (10%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKT 136
           G L++PV    D L +L        LR+    IA+ G+ GKTTT  ML +ALSS+    +
Sbjct: 90  GELAVPVVHRSDALASLMN-----GLRA----IAVAGTHGKTTTTSMLAVALSSLGLAPS 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           YA  G        P T      +   G  ++ ++   E         P +A++  +   H
Sbjct: 141 YAIGGDLEG----PGT------NATHGEGDIFVAEADESDRSFQKYDPEVAIVLNVELDH 190

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            +N++ ++EI  +       +   GT+ ++ D      L  +   L    + ++G +++A
Sbjct: 191 HANYASMDEIYDSFETFVGKVVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDA 250

Query: 257 DFQLRKWKQCSEQSWMEVQLQGK 279
           D ++ K       S + V L GK
Sbjct: 251 DVRVHKVTPRGLTSEVTVLLNGK 273


>gi|291288102|ref|YP_003504918.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885262|gb|ADD68962.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 168/416 (40%), Gaps = 59/416 (14%)

Query: 63  KGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +GA +VV        N ++V +  +  IPV    ++L  L +L  +         IAI+G
Sbjct: 66  EGADVVVYSSAVRETNPELVCAKDNF-IPVIKRGEMLAELMRLKYS---------IAISG 115

Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           S GKTTT  M+   L++ K      +G   N      TL    V V         +   +
Sbjct: 116 SHGKTTTTSMVAEILNAAKLDPTVVVGGILNTKDTNATLGSGNVIV-------AEADESD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFE 233
             FL  L+ P +A++T I   H   +  +E++    A+    +   G+  L   DD+  +
Sbjct: 169 RSFL--LMSPSVALVTNIDFEHPDTYRDLEDVKRTFADFISRVPFYGSAVLCLEDDNTAD 226

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L+      L  +   ++G    AD      +Q       +V + G+    +   +G+   
Sbjct: 227 LI-----PLIDRRFVTYGFRAQADVHGVNVEQKGFSMQFDVIISGEKAGRIK--LGFPGE 279

Query: 294 QNMLMTLGIVSILTA-DV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            N+L  LG +++ T  D+   T  +AL  F   +G  +R     + G   ++D+ Y  +P
Sbjct: 280 HNVLNALGAIAVATQFDIPFRTIKRALEGF---KGVQRRLTSRYDDGECIVMDD-YGHHP 335

Query: 351 ASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             +K  +           +L+   PH   R  A++ +       +  F  D+  +  +Y 
Sbjct: 336 TEIKTTLKAVRGAYPDKKILAIFQPHRYSRTAALMKEFA-----TAFFDADMLFITDIYA 390

Query: 401 ISHVWLSGFHVLAL-KDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            S   + G    A+ K+   R   +V Y    DG+F ++     DG V++   + S
Sbjct: 391 ASEEKIDGVDSEAMVKEIKTRGFKNVKYIPGFDGIFEYLHEYGCDGTVMLTLGAGS 446


>gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
 gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 132/323 (40%), Gaps = 43/323 (13%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV++ +      VA+     IPV    ++L  +        LR K +I+ I G+ 
Sbjct: 64  GADVVVVSSAIAADNPEVAAAREAGIPVIPRAEMLAEI--------LRLKYSIV-IAGAH 114

Query: 118 GKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKT+T  M+   L          IG     IG    L       D+ + E   S    ++
Sbjct: 115 GKTSTTSMVASVLGQGGMDPTVVIGGKLKSIGTNAVLGHG----DYIVAEADESDGSFLK 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           F      P IAV+T I   HL  +  +  I+ +  E  + +   G   +  D+   + L 
Sbjct: 171 F-----SPSIAVVTNIDREHLDFYPDLAAISKSFLEFLDRIPFYGVAVVCLDNEPLQALV 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
                L  K   ++G S  AD Q R     + +    V  + + +  +  G+ G+H  +N
Sbjct: 226 ----PLIKKRFITYGTSNQADLQARHITPINGKVRFSVVWRQEELGTIDLGVPGFHNVRN 281

Query: 296 MLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            L  + +   + +  A +  A++ ++      G  +R       G   ++D+ Y  +P  
Sbjct: 282 ALAAVAVGLELGLAFAVIKEALETMA------GVQRRLEKKGETGGVIVVDD-YGHHPTE 334

Query: 353 MKAAISVLSQISPHGEGRRIAVL 375
           +KA +  + Q   H E RR+ V+
Sbjct: 335 IKATLQGVRQ---HWEDRRVVVV 354


>gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
 gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
          Length = 483

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 135/318 (42%), Gaps = 43/318 (13%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           K A +VVV       N +++A+  +  IPV    ++L  L       R R     IAI G
Sbjct: 76  KDANVVVVSSAIDETNPEIIAAKAA-RIPVVRRAEMLAEL------MRFRHG---IAIAG 125

Query: 116 SVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + GKTTT  ++    A + +  T+  IG   N  G    + +     DF I E   S   
Sbjct: 126 THGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEADES--- 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           +  FL HL +P ++VIT I   H+  + G +E++     +    L   G   +  D    
Sbjct: 178 DASFL-HL-QPMVSVITNIEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVA 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYH 291
             L  +    G + I ++G+S  AD+++  + Q +      V   QG+ +    +  G H
Sbjct: 236 AELIPR---FG-RPIITYGESPTADYRMSDFSQSANTCTFTVTNKQGECLTATLNMPGKH 291

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYN 347
            A N    + +           ++AL  F   EG G+R++        +G   L+D+ Y 
Sbjct: 292 NALNATAAIAVAKDQNIANQAILEALQKF---EGIGRRFQQYGEFENERGNIMLVDD-YG 347

Query: 348 ANPASMKAAISVLSQISP 365
            +P+ + A I+ + +  P
Sbjct: 348 HHPSEVAATIAAVREGWP 365


>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 18/140 (12%)

Query: 95  LNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           ++++ +  R+++K + IIA+TGS GK+TT  ++   L+ + K     G+  +        
Sbjct: 115 ISEIELGYRIKAKDSKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAGNIGD-------- 166

Query: 154 ARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           A    D+     D+ + E+    L     L +  +P +AV+  I P H+  ++  E+ A 
Sbjct: 167 AFCSYDIEKPGWDYIVLEISSFQLD----LINSFQPDVAVLLNITPDHIDRYNSFEDYAL 222

Query: 209 AKAEIFEGLEKTGTIFLNYD 228
           +K  IF+  E T T  L +D
Sbjct: 223 SKVNIFKNQEMTDTAVLFWD 242


>gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 148/364 (40%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGDLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G+  + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGREPLPVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY    A   G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPAAGGGSYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +   +D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAITTANGDALSRALRAAGKVEPVFVAAIDDVPDALTKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|254369764|ref|ZP_04985774.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122723|gb|EDO66852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 53/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK           ++Q+ +       +        K +++V 
Sbjct: 202 VYD----------VHN-GIKYA--------GEYQIIRGAIYRNST--------KLLDIVE 234

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 289

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327


>gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
 gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
          Length = 486

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 147/385 (38%), Gaps = 70/385 (18%)

Query: 56  FILHAVQK--GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           F  HA +   GA +VVV       N ++VA+   L IPV    ++L  L       R R 
Sbjct: 71  FFGHAAENVNGASVVVVSTAIAQDNPELVAA-RELRIPVVRRAEMLAEL------MRYRH 123

Query: 107 KATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG-----SYNNHIGVPLTLARMPVD 159
               IAI G+ GKTTT  ++T     + +  T+   G       N  +G    L     +
Sbjct: 124 G---IAIAGTHGKTTTTALMTQIYFEAGLDPTFVNGGLVKSAGTNARLGCSRYLIAEADE 180

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T I   H+  + G  E +     +    L 
Sbjct: 181 SDASFLHL---------------QPMVSVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLP 225

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  DD     L  +   +G + I ++G S +AD ++ ++KQ + Q    +   G
Sbjct: 226 FYGLAVMCVDDPVVRELLPR---IG-RQIITYGFSDDADVRIVEYKQYAHQGHFTIVRAG 281

Query: 279 K-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCA 333
           K  + V  +  G H A N    + + +    D D  I+AL  F   EG G+R+       
Sbjct: 282 KPDLNVKLNIPGKHNALNATAAVAVATEEGVDDDAIIRALLEF---EGTGRRFDHLGEFD 338

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
              G   L+D+ Y  +P+ +   I                 PH   R   +  D   + E
Sbjct: 339 TGNGSVMLVDD-YGHHPSEVDVTIQAARAGWEKKRLVMIFQPHRYSRTRDLYEDFAHVLE 397

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408
                 +D+  +L +Y+   V + G
Sbjct: 398 -----QVDVLLMLDVYSAGEVAIPG 417


>gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 453

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 26/263 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++    A + +  T+  IG   N  G    + +     DF I E  
Sbjct: 91  IAIAGTHGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 145

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL HL +P ++VIT I   H+  + G +E++     +    L   G   +  
Sbjct: 146 ES---DASFL-HL-QPMVSVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCI 200

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           D      L  +    G + + ++G+S +AD+++  + Q +      V   QG+S+    +
Sbjct: 201 DSEVASELIPR---FG-RPVITYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLN 256

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H A N    + +           ++AL  F   EG G+R++        +G   L+
Sbjct: 257 MPGKHNALNATAAIAVAKDQNIANFAILEALQKF---EGIGRRFQHYGEFENERGSVMLV 313

Query: 343 DESYNANPASMKAAISVLSQISP 365
           D+ Y  +P+ + A I+   +  P
Sbjct: 314 DD-YGHHPSEVAATITAAREGWP 335


>gi|3122408|sp|O31211|MURC_STAAU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2642659|gb|AAB87090.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Staphylococcus aureus]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QMKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   DV    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV+G  DV     +LA   R    A  +A+TG+ GKTTT +ML   L +     A +G 
Sbjct: 98  VPVWG--DV-----ELAWRLRRPDSAPWLAVTGTNGKTTTVQMLASILEAAGLRTAAVG- 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +IGV L  A +  + ++ +  + +S   ++ +   L R H AV+  +AP HL     
Sbjct: 150 ---NIGVSLLDAVLGEE-EYDVLAVELSSY-QLHWAPSL-RAHSAVVLNLAPDHLDWHGS 203

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++  A+ K  I+EG  +   ++   D +  +L++      G + +
Sbjct: 204 LQAYAADKGRIYEG-NRVACVYNVADKATEDLVREADVEEGCRAV 247


>gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           EO147]
          Length = 464

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 149/363 (41%), Gaps = 37/363 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +      L  + +  +G + +A  +    +    +    V  +G+  + VV +
Sbjct: 218 DDPNVRQIV----PLISRPVVRYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
             G H  QN L  + I S L    D AI +AL+ F+    R +RY    +  G +TLID+
Sbjct: 274 LPGLHNVQNALAAIAIASDLDV-ADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLIDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   +
Sbjct: 333 -YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALVL 387

Query: 402 SHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   +  A  DAL R++         +  T+D +   +      GDVV+   + 
Sbjct: 388 TEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARAGDVVITMGAG 447

Query: 454 SCG 456
           S G
Sbjct: 448 SIG 450


>gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 467

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +    +P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLELPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 502

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 39/250 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG----------AGL 67
           ++G+VP     G++ DSR + P + F A  G   DG  +I  A+  G          AG 
Sbjct: 22  TLGVVP----GGVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGT 77

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                +    + +L+  V G+ ++ G L   A+  R   + ++IA+TG+ GKT+  + + 
Sbjct: 78  PDFAWNRTWQVANLA--VAGLRELCGPLAN-AIYGRPSERLSLIAVTGTNGKTSVSQWIA 134

Query: 128 IALSSIKKTYACIGSYNNHIGVP-------------LTLARMPVDV---DFGIFELGMSH 171
              ++  +  A IG+     G+P              TL R        D     L  S 
Sbjct: 135 ---ATHPRRCAVIGTLG--AGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASS 189

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +G         R  +AV T +   HL   + +   A AKA +F    +      N DD F
Sbjct: 190 IGIAEGRLDGARVDVAVFTNLTRDHLDYHATMAAYAQAKARLF-AWPRLRLAVSNLDDPF 248

Query: 232 FELLKAKSHA 241
              L A S A
Sbjct: 249 GRELAALSTA 258


>gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 113/290 (38%), Gaps = 52/290 (17%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++ +ALS+                 P  L    +D+  G F +G 
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ +I  I   HL  +  I  I     +    +   
Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215

Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQL 276
           G I  N DD    E+L+ AK + L  +      +++N +F     K C+  +    E +L
Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVLTYEINNGDIQARNIEFN---EKGCATFDVFRNEEKL 272

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S+ V     G H   N L  + +  I   + D  +  LS F    G  KR+     +
Sbjct: 273 LSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTK 325

Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377
              T+ID+ Y  +P  +KA +S   +++         PH   R   +  D
Sbjct: 326 NDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374


>gi|118474991|ref|YP_891986.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118414217|gb|ABK82637.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 478

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
           S   I+ IT S GKT+ K  L   L      Y    S N   G+   +   +  +    I
Sbjct: 155 SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 214

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            E G    G+I+ +T  + PH  ++  I  AH+  F  IE + + K E
Sbjct: 215 AEAGARLKGDIKDITEFLEPHFVIVGEIGDAHIEYFKSIENVRATKLE 262


>gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
 gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V   G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIRDGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    A + G +TLID
Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPAADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAISTANGDALSRALRTVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14]
          Length = 458

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 170/411 (41%), Gaps = 48/411 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG D +++     A +   N +++ ++    IP+    ++LG L        +++  T I
Sbjct: 68  DGIDCVVYT----AAINKANPELMEAVAR-KIPMLTRAELLGQL--------MKNYKTPI 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A++G+ GKTTT  M++  L +           +  I V   L  +  ++  G  E  ++ 
Sbjct: 115 AVSGTHGKTTTTSMISHILLA--------ADLDPTISVGGILKAIGGNIRVGKSETFITE 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DS 230
             E         P I+VI  I   HL  F  +E+I  +  +    L   GT+ +N D D+
Sbjct: 167 ACEYTNSFLHFYPKISVILNIEEDHLDFFKDLEDIRHSFHQFAALLPSDGTLIINGDIDN 226

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI 288
           + E+      +L    I ++G S   D+         E+  +   L   GK ++ +   +
Sbjct: 227 YQEIYD----SLDCNVI-TYGSSDMLDYSASNITY-DEKGLVAFDLIKNGKVVDHIQLSV 280

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L ++    +L   ++T  K +  F    G  +R+         T++D+ Y 
Sbjct: 281 TGDHNVSNALASIATAELLQIPMETIKKGILSF---SGTDRRFEYKGTFNGVTVVDD-YA 336

Query: 348 ANP----ASMKAAI-----SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P    A++KAA       V     PH   R  A   +  E   LS + H+ LA++ + 
Sbjct: 337 HHPTEIAATLKAAQHYPHNQVWCVFQPHTYTRTKAFFHEFAEA--LSHTDHLVLADIYAA 394

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + +S   +   ++A       HY  + + +  F++ +   GD+++ 
Sbjct: 395 RETDTLGVSSADL--AEEARKLGTDAHYLPSFEEIEAFLKENCKSGDLLIT 443


>gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
 gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
          Length = 413

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 133/331 (40%), Gaps = 66/331 (19%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N D+V     L+I    V++    +++  +   L    T I ITGS GK+TT  + +  L
Sbjct: 48  NFDLVVVSPGLNIEKLNVNNKSKVISEYELVFNLVKDKTFIGITGSNGKSTTTFLTSQIL 107

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + I  K+ AC      +IG PL  A    D D+ + E     +  +R    L      VI
Sbjct: 108 NKIGLKSVAC-----GNIGYPLGYAIFD-DFDYFVVEFSSFQIDLMRKGEFL---DAGVI 158

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL  +   E    +K  + E L+         DD FF         +G K I S
Sbjct: 159 INITPDHLDRYKTFENYLKSKVRLSELLK---------DDGFF--------VVG-KDITS 200

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEV------VHHG--IGYHMAQNMLMTL 300
           +         +  +  C +  + +  +L+G  +        V+H   +G H   N+   L
Sbjct: 201 Y---------IANYDLCIDTDFNDYPKLKGDVLYFENFYINVNHFPLVGKHNLVNLSFAL 251

Query: 301 GIVSI---LTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKA 355
            IV+    L  DV   I+ L        +G  +RC + +       +++S   N  S K 
Sbjct: 252 EIVNNFYELKGDVTHLIEDL--------KGLPHRCEIVREIDGILFVNDSKGTNVDSTKT 303

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           A+  L       +G+ I +LG + + G+ S+
Sbjct: 304 ALKGL-------DGKIILLLGGLDKDGDFSE 327


>gi|223043543|ref|ZP_03613588.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14]
 gi|314933892|ref|ZP_07841257.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87]
 gi|222443031|gb|EEE49131.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14]
 gi|313654042|gb|EFS17799.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  IE++  A  ++   ++K   I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIEDVYDAFQDMAHNVKK--AI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L+A         IY +G  +  D   +  +   + +  +V   G+  + 
Sbjct: 201 IAWGDDDYLRKLEADV------PIYYYGFKETDDIYAKNIQITEKGTQFDVYTNGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +VD    AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQFGDHNILNALSVIAISYLEKMNVDNIKDALVTFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +      LS++  + L
Sbjct: 311 DD-YAHHPREISATIESARKKYPQKEVVAVFQPHTFSRTQAFLDEFA--SSLSKADRVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 478

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 46/371 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  G    L       D+ + E  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANAKLGSG----DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P +AV+T I   H+  +      +  A  +    +   GT  L  
Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMETYGHDFGNLKKAFVDFLRRMPFYGTAILCT 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEV 283
           DD     +  +        I S+G ++ A  +    +    Q     Q +       ++V
Sbjct: 218 DDPVVRQIVPEMSC----PITSYGLNEEAQVRAINVRAVGAQMHFTAQRRNGVKLPDLDV 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-----ALNQGF 338
           V +  G H   N L  + +   L        KALS F    G G+R++      A + G 
Sbjct: 274 VLNLAGQHNVLNALAAIAVAVELNVPDAAVQKALSDF---TGVGRRFQSYGELPARDGGR 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FT+I E Y  +P  + A +S      P   GRR+ +             F  D  +V+S 
Sbjct: 331 FTVI-EDYGHHPVEVAATLSAARGAFP---GRRLVLAFQPHRYSRTRDCFE-DFVKVISS 385

Query: 399 YN----ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
           +     ++ V+ +G   +   D  +L R++ V       + +++  +   I  +  DGD+
Sbjct: 386 HADAVLLAEVYAAGETPIVAADGRSLARALRVAGKVEPVFVDSIHDMPQAIVDAAQDGDI 445

Query: 447 VVVKSSNSCGF 457
           V+   + S G 
Sbjct: 446 VMCMGAGSIGL 456


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae
           SmR1]
 gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 146/367 (39%), Gaps = 43/367 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAQGGLDPTFV--------IGGRLTSAGANAKLGTGEFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  ++     +  A  E  + L   G   L  
Sbjct: 160 EADESDASFLN--LTPVIEVITNIDADHMETYNHDFARLKQAFVEFTQRLPFYGVAVLCL 217

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E++   S     K I ++G  ++AD +    K    +    V   G + M+V  
Sbjct: 218 DDPHVREIMPMVS-----KPILTYGFHEDADVRAIDAKAVDGKMEFTVIQDGYAPMQVSL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQGF 338
           +  G H  QN    + I   L  D     KAL+ F+    R  RY             G 
Sbjct: 273 NQPGMHNVQNACAAIAIARELDVDDAATQKALTEFNGVGRRFTRYGEVPLWDAEGKPAGH 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTL+D+ Y  +P    A I+      P   GRR+ VL         ++    D  +VLS 
Sbjct: 333 FTLVDD-YGHHPVETAATIAAARGAYP---GRRL-VLAFQPHRYTRTRDLFEDFVKVLSS 387

Query: 399 YNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVV 447
            ++   + V+ +G   +   D    +  +  +  ++ +F+         I++ + DGDVV
Sbjct: 388 PDVLVLAEVYSAGEAPIVAADGRSLAHALRAAGKVEPVFVDDIGDMPETIRNVVRDGDVV 447

Query: 448 VVKSSNS 454
           +   + S
Sbjct: 448 MTMGAGS 454


>gi|298241643|ref|ZP_06965450.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554697|gb|EFH88561.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 644

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           H + P +AV+T I P HL+ ++G+E+ A AKA IF    + G    NYD+ +
Sbjct: 361 HSISPLVAVMTNIYPDHLNTYNGMEDYAEAKANIFRFQTEHGIAVFNYDNPW 412


>gi|291514756|emb|CBK63966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alistipes shahii
           WAL 8301]
          Length = 381

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV  I    IPV         ++++  A R   KA  I ITGS GKTTT  ++   +   
Sbjct: 78  MVRKIREAGIPV---------ISEMEFAGRYMGKAKCICITGSNGKTTTTSLIYKIMRDA 128

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTI 192
               A  G    +IG     +    D D+ + EL    L G  RF     R H+ V+  I
Sbjct: 129 GMNVALGG----NIGESFAWSVATGDYDWYVLELSSFQLDGMYRF-----RAHVGVLMNI 179

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            P HL  +    +  A +K  I + +        + DD 
Sbjct: 180 TPDHLDRYDHCFQNYADSKMRIVQNMTSRDWFVYSGDDE 218


>gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
          Length = 489

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 153/400 (38%), Gaps = 38/400 (9%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +LL  I+   + G  P+  +N + +DSR+   +  F A  G   D H FI + V++G  +
Sbjct: 5   ELLSKIKAKKLYGTFPE-HINKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRM 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEM 125
           +VV+      I  L I    V D L A       V      K T   +TG+ GKT+   M
Sbjct: 64  IVVD----HYIEGLDIGQVVVRDTLQAARIFTQHVMDFPSHKLTTYGVTGTNGKTSVATM 119

Query: 126 LTIALSSIKKTYACIGS----YNNHIG-----VPLTLA-----RMPVDVDFGIFELGMSH 171
           +     ++    A +G+    YN  +       P T+         V+       + MS 
Sbjct: 120 IHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMSS 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNY 227
            G     T  V   +A+ T +   HL     +E     KA +F  L    ++     +N 
Sbjct: 180 HGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVNG 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD + + L   S     + + ++G  +N D +    K+        ++    ++E+    
Sbjct: 240 DDDYSKELIIAS----PREVITYGIEQNTDIKATNIKESIHGIAFTLETPDGNVEITCPY 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     NML  L  +      +    +A     P EGR +     L++     +   Y 
Sbjct: 296 IGRFNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLE----VLDRNLPIDLVIDYA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             P  M   I  L    P   G+ I ++G M    +LS++
Sbjct: 352 HTPDGMNKLIDAL---EPFKRGKMIFLIG-MAGERDLSKT 387


>gi|89256891|ref|YP_514253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115315270|ref|YP_763993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503068|ref|YP_001429133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010673|ref|ZP_02275604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368162|ref|ZP_04984182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953242|ref|ZP_06557863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313535|ref|ZP_06804126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|122063246|sp|Q2A1Z9|MURD_FRATH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122324734|sp|Q0BKM8|MURD_FRATO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224761|sp|A7NDX4|MURD_FRATF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89144722|emb|CAJ80053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130169|gb|ABI83356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253972|gb|EBA53066.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156253671|gb|ABU62177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 53/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK  Y+       ++Q+ +       +        K +++V 
Sbjct: 202 VYD----------VHN-GIK--YA------GEYQIIRGAIYRNST--------KLLDIVE 234

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 289

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327


>gi|224534179|ref|ZP_03674759.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
 gi|224514604|gb|EEF84918.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
          Length = 468

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139
           L+IPV    +VLG L++         K   I I GS GKTTT   L +  + +       
Sbjct: 96  LNIPVLSYPEVLGELSR---------KYYSIGIAGSHGKTTTTAFLGLLFNKLGLNPNVI 146

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +GS     G    +A        GI  + ++   E +       P++ ++T I   H+  
Sbjct: 147 VGSSVKDFGDNSAIA--------GISNIFIAETCEYKKHFLYFSPNMLILTNIDYEHVDF 198

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNAD 257
           F   E +  A  +    L+K G + +N DD+   LLK K   +  K   I+SFG    ++
Sbjct: 199 FKNYEALEDAFLQYINNLKKNGILIINSDDN--NLLKIKRQ-INRKDINIFSFGSKDLSN 255

Query: 258 FQLR 261
           FQ+ 
Sbjct: 256 FQIN 259


>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 17/178 (9%)

Query: 69  VVNTD-MVASIGSLS-IPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           V+N+D ++ S G  S IP+        +  +++LA +        I+A++G+ GKTT  +
Sbjct: 56  VLNSDVIIKSPGVYSNIPILKKARKQKIKIMSELAFSLENSKYKKIMAVSGTNGKTTVTD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++  + +  K     G    +IG PL   A    +  F   EL    LG+    T   R
Sbjct: 116 LISKIIKAAHKDSIVSG----NIGCPLADKALKTTETTFITMELSSYQLGD----TPDFR 167

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKA 237
           P I+V+  I P HL     ++    AK  IF          +NYDD      FE  KA
Sbjct: 168 PAISVLLNITPDHLEYHKTMKAYLRAKENIFINQRDGDFTVINYDDKICRKIFEKTKA 225


>gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 444

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV  +    IP+         ++++  A R  + A +I ITGS GKTTT  ++       
Sbjct: 79  MVLKVKEAGIPI---------ISEIEFAGRY-THAKMICITGSNGKTTTTSLI---YHIF 125

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTI 192
           KK    +G   N IG  L L     D D+ + EL    L  + RF     R +IAV+  I
Sbjct: 126 KKAGYNVGLAGN-IGQSLALQVAEKDYDYYVIELSSFQLDNMYRF-----RANIAVLLNI 179

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            P HL  +   ++    AK  I +  E+T       DD
Sbjct: 180 TPDHLDRYDHCMQNYVDAKMRILQNQEETDAFVYWNDD 217


>gi|325684170|gb|EGD26356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 439

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 31/260 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + GS GKT+T  +L   L     T   IG           + +   D  F ++E  
Sbjct: 107 TSIGVAGSHGKTSTTGLLATVLGEAAPTSFLIGD---------GMGKGVKDSRFFVYEAD 157

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T +   H   F   ++ ASA     +  +K   +F+ 
Sbjct: 158 -----EYRRHFLAY--HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + ++ K+        Y++G   + DFQ     + +E +   V+ QGK + E   
Sbjct: 209 GDDERLQKIQPKTAKK-----YTYGLKDSDDFQAFDVVKTTEGAKFHVRAQGKDLGEFTI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + I      D+D   K L  +      G + R +      T++ + 
Sbjct: 264 HLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKY-----TGAKRRFSEKDFGDTVVIDD 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  ++A I    Q  P
Sbjct: 319 YAHHPTELRATIQAARQKFP 338


>gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 552

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 127/311 (40%), Gaps = 23/311 (7%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            S+G V    + GI++ +  +   EAF AI+G +  G +F   A ++GA  V+ + +   
Sbjct: 33  RSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAERGAVAVITDAEGAE 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
              S  +P+  V+D    L  L+              ++A TG+ GKT+   +L   L  
Sbjct: 93  IAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTGTNGKTSVSHLLEGILGQ 152

Query: 133 IKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLG----EIRFLTHLVRPH- 185
           +        +   HI   + ++R+  P   +F      M   G     +      +  H 
Sbjct: 153 LGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEAVAVEVSAQALTRHR 212

Query: 186 -------IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKA 237
                  +A  T +   HL +++ + E   AK  +F     + G + L+       + +A
Sbjct: 213 VDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRGVVCLDSASGAEIVARA 272

Query: 238 KSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQN 295
           +   + I T   +   S +AD+ +    +  E +   ++ + G+++  V   IG HMA N
Sbjct: 273 EIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRALTTVVPVIGRHMAAN 332

Query: 296 MLMTLGIVSIL 306
               L IV +L
Sbjct: 333 --AGLAIVMLL 341


>gi|238760097|ref|ZP_04621247.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
 gi|238701716|gb|EEP94283.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
          Length = 495

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 112/272 (41%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+    SSI   YA  G               P  V+ G+ +   +
Sbjct: 126 IAVAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGT 165

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I P H+  + G  E +          
Sbjct: 166 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEPDHMDTYQGDFENLKQTFINFLHN 224

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 225 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 280

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + S    + D  ++AL+ F   +G G+R+    N
Sbjct: 281 LDKPLMTVTLNAPGRHNALNAAAAVAVASEEGIEDDDILRALAGF---QGTGRRFDFLGN 337

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A I 
Sbjct: 338 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIK 368


>gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
 gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
          Length = 512

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166


>gi|258542968|ref|YP_003188401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634046|dbj|BAI00022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637106|dbj|BAI03075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640158|dbj|BAI06120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643215|dbj|BAI09170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646270|dbj|BAI12218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649323|dbj|BAI15264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652309|dbj|BAI18243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655367|dbj|BAI21294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 471

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           SKA  + ITG+ GK+TT  +L   L+  K   A  G+       P  LA +P   D G++
Sbjct: 122 SKARFVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLG-----PAALA-LPFLSDNGVY 175

Query: 166 ELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            L MS     R  T H      A +  + P HL   +G++  A AK  +F G        
Sbjct: 176 VLEMSSYMLERLDTLHF---DAACLLNLTPDHLDRHAGMDGYAQAKKRVFTGQTDKDLAV 232

Query: 225 LNYDDSFFELLKAK 238
           +  DD++   + A+
Sbjct: 233 IGVDDTWCRAIAAE 246


>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. WCH70]
 gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
          Length = 490

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 137/365 (37%), Gaps = 45/365 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHDF   AV+ GA  V+    +      + +PV 
Sbjct: 23  ITSIEMDSRQVKNGALFICIKGFTVDGHDFAKQAVENGAVAVIAERPL-----DVDVPVI 77

Query: 87  GVDDVLGALNKLAVA------ARLR--------SKATIIAITGSVGKTTTKEMLTIALSS 132
            V D   A+  LA A       RL          K T   I   + +   K+   I    
Sbjct: 78  VVRDSRRAMAMLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEHIARKANKKTGLIGTVH 137

Query: 133 IK---KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMS--HLGEIRFLTHLVRPH 185
           IK    TY    +    + +  T  +M VD  VD  + E+     H+G +    H     
Sbjct: 138 IKIGDHTYPTKNTTPESLLLQRTFKQM-VDEGVDVAVMEVSSHALHMGRV----HGCDYD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           +AV T +   HL     +EE  +AK  +F  L      E+     LN DD   +  K  +
Sbjct: 193 VAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASKYYKHMT 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    ++ ++G   ++D   +K          ++     ++ V    IG     N+L  
Sbjct: 253 AA----SVITYGIETDSDIMAKKIDIVPSGMSFDLITPNGTVRVKTRLIGLFNVYNLLAA 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +    +   ++A+       GR +       Q F  ++D  Y   P S++  +  
Sbjct: 309 VSACLVSGIPLPVIVEAIEEISGVAGRFE--TVDEGQNFTVIVD--YAHTPDSLENVLKT 364

Query: 360 LSQIS 364
           + Q +
Sbjct: 365 IRQFA 369


>gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
 gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 148/363 (40%), Gaps = 60/363 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           +IAITGS GK+T  ++  +    + K          +IGVP L L   P D    + EL 
Sbjct: 112 VIAITGSNGKSTVTDLAGV----VAKAAGLQVGVGGNIGVPALELLEQPAD--LYVLELS 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +    A    ++  H+  + G+E    AK  IFE  E   +  +N  
Sbjct: 166 SFQLET----TSSLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEHAE---SCIVNAQ 218

Query: 229 D--SFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           D  ++ E  K +    +L  KT +S    +N ++       C +   +   L    + +V
Sbjct: 219 DKATYPEHFKGELVEFSLTDKTQFSVQVQQNREY------LCQDNLPI---LATDELTLV 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTL 341
               G H   N L+ L ++  +  DV   + AL  ++     G  +RC   A N G    
Sbjct: 270 ----GRHNVANALVVLALLDCVGIDVSQGLSALKSYN-----GLTHRCQIVADNHG-VKW 319

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N AS  AA+S L+       G+   ++G + +  + S+     LA VL+  N+
Sbjct: 320 VNDSKATNVASTLAALSGLTLT-----GKLYLLVGGVGKGADFSE-----LAPVLAKLNV 369

Query: 402 SHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                   G   +AL  +  +  H      M  +  + +  L  GD+V++  S +C  + 
Sbjct: 370 QLCCFGEDGAQFMALHPSAKQFTH------MQEIVEWAKPQLTTGDMVLL--SPACASFD 421

Query: 460 LIN 462
             N
Sbjct: 422 QFN 424


>gi|282917000|ref|ZP_06324758.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319487|gb|EFB49839.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   D+    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
          Length = 479

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 36/341 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+  DSR I     F A++G   DGH FI  A++KGA L++V+ ++    G   + +  
Sbjct: 22  TGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIGYVLIKN 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +   LG L         +    I+ +TG+ GKTTT  +L   L   K   A  G+    I
Sbjct: 82  LRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIEYKI 138

Query: 148 GVP-----------LTLARM-----PVDVDFGIFELGMSH---LGEIRFLTHLVRPHIAV 188
           G             L L RM        +++ I E+  SH   LG +  L        A+
Sbjct: 139 GKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEVS-SHALELGRVNMLEF----DGAI 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E+   AK ++F  L       LN DD +   L+ + H +      
Sbjct: 194 FTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVLNVDDEYGRRLQEEFHGI------ 247

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S+G +K A+ Q +       +  +E+ L GK  E     +G     N+L ++ +V  L  
Sbjct: 248 SYG-TKQAEVQGKILGFEGGKEKVELSLFGKKKECKIQILGGFNLYNLLGSIALVKELGM 306

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             +     + +     GR +   C   Q +  +ID ++  +
Sbjct: 307 SEEEIFAKVELLQGAPGRFETVDCG--QDYMVVIDYAHTGD 345


>gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
 gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 151/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A ++      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATVAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +  A  DAL R++         +  ++D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAITTANGDALSRALRAVGRVDPVFVASVDDVPDALAGVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|283770818|ref|ZP_06343710.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460965|gb|EFC08055.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L + V   +D LG         ++  + T +A+TG+ GKT+T  +L+  ++  KKT   
Sbjct: 82  QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG     +G+P        + D+  FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I ++  A  E+   ++K G I    DD     ++A         IY +G   + D
Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +  +   + +  +V + G+  +  +    G H   N L  + I  +   D+    +A
Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEA 288

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368
           L  F   + R      A NQ    +I + Y  +P  + A I    +  PH E        
Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343

Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              R  A L +  E   LS++  + L E+ 
Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371


>gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
 gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
          Length = 509

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 41/273 (15%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           +I+G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V   
Sbjct: 31  SIKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQ 88

Query: 73  DMVAS-IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEM 125
               S +G +      V D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +
Sbjct: 89  PYENSAVGII------VTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAI 142

Query: 126 L-------TIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL---- 172
           L       T  LS++  T      + +H+  P  L L RM  +      E GM+HL    
Sbjct: 143 LDHTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEA----VENGMTHLVMEV 198

Query: 173 GEIRFLTHLVRP---HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               + T  V      + +   I+P H+S       ++    K ++   +  + T+ LN+
Sbjct: 199 SSQAYKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNH 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           +  +F+LLK  +    I TI ++G+S+ +++Q+
Sbjct: 256 ESDYFDLLKETADLFQIPTI-TYGRSEKSNYQV 287


>gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
 gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
          Length = 463

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 37/290 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI 140
           +PV    DVL         A L +K   IA+ G+ GKTTT  ML++    + I  T    
Sbjct: 91  VPVIHRSDVL---------AYLMNKHKGIAVAGAHGKTTTSSMLSLITCDNGIDPTVVVG 141

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  NN     L    +    D+ + E   S    ++F     RP++AVIT I   HL ++
Sbjct: 142 GVVNN-----LGTNSVNGKSDYVVAEADESDGSFLKF-----RPYLAVITNIENDHLDHY 191

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFG-KSKNA 256
              E+I  A  +  + +++ G   L YD+        K   +G KT   + S+G  +K+A
Sbjct: 192 GTEEKIQEAFQQFVDQVKEQGKAILCYDNE-------KVRRVGEKTATEVISYGIDAKDA 244

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIK 315
           D++    +   + +  ++  +GK +   H  + G H   N L  L     L   V+   +
Sbjct: 245 DYRAENIEYGKDGTHYDILFRGKKIGKGHLIVPGRHNVLNALGALAAARELGLSVEEISR 304

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +L  F    G  +R+          ++D+ Y  +P  +K  +    Q  P
Sbjct: 305 SLEKF---TGAKRRFETKGRVRGIWVVDD-YAHHPTEIKVTLKAARQTQP 350


>gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 33/287 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---LHAVQKGAGLV---------VVNTDM 74
           V GI + + +IA +       G H  G+D +   L A  +  G+V         V N D+
Sbjct: 10  VGGIGVSALAIAAKRL-----GAHVAGYDSVANKLTAKLEALGIVIFTSPSGVDVANFDI 64

Query: 75  VASIGSL--SIPVFGVDDVLG--ALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V    ++  S P+      LG   L + + +A  ++  +  +AITG+ GKTTT  +L   
Sbjct: 65  VVYSSAILSSHPLLSQARSLGIQCLQRAMFLAVLMKDFSYSLAITGTHGKTTTSSVLATL 124

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEIRFLTHLVRPHIAV 188
           L  + K  + +      +G  +  A   + V+ G  +L + +   +  FL   + P + +
Sbjct: 125 LCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIEADESDASFL--FLSPQVVI 175

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H++ ++   +        F   E   +I+L  DD     L AK + L  K + 
Sbjct: 176 ITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQLD-KNVT 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           S+G S NAD Q+  +    E +  +++ +G  +       G +  QN
Sbjct: 235 SYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGKYNVQN 281


>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
          29799]
 gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
          29799]
          Length = 486

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          ++GIS D+R+I P E F A+ G   DGH F+  AV+KGA  V+ +
Sbjct: 23 ISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICH 67


>gi|269137996|ref|YP_003294696.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983656|gb|ACY83485.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
          Length = 491

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 177/445 (39%), Gaps = 85/445 (19%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T + A    +       IPV    ++L  L       R R     IAI G+
Sbjct: 81  RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M+    SSI   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 132 HGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGS 171

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +A++T I   H+  + G  E +          L   G 
Sbjct: 172 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281
             L  DD     L  +   +G + + ++G S++AD ++ +++QC  Q    +  Q +  +
Sbjct: 231 AVLCIDDPVIRELLPR---VG-RQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRL 286

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332
            V  +  G H A N      + S    D +  ++AL  F   +G G+R+           
Sbjct: 287 AVTLNAPGRHNALNAAAAAAVASEEGIDDEAILRALGGF---QGTGRRFDFLGEFSLQHV 343

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G   L+D+ Y  +P  + A I       P    RR+ ++         ++  + D 
Sbjct: 344 NNKPGKVMLVDD-YGHHPTEVDATIKAARAGWPD---RRLVMVFQPHRFTR-TRDLYDDF 398

Query: 393 AEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV------- 442
           A VLS  ++     V+ +G H +   D+      +     +D + +   ++L        
Sbjct: 399 ANVLSQVDVLLMLDVYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFL 458

Query: 443 -DGDVVVVKSSNSCGFYRLINLLLE 466
            +GD+++ + + + G  R+  +L E
Sbjct: 459 QEGDLILTQGAGNIG--RVARVLAE 481


>gi|304558043|gb|ADM40707.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda FL6-60]
          Length = 487

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 177/445 (39%), Gaps = 85/445 (19%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T + A    +       IPV    ++L  L       R R     IAI G+
Sbjct: 77  RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M+    SSI   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 128 HGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGS 167

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +A++T I   H+  + G  E +          L   G 
Sbjct: 168 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281
             L  DD     L  +   +G + + ++G S++AD ++ +++QC  Q    +  Q +  +
Sbjct: 227 AVLCIDDPVIRELLPR---VG-RQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRL 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332
            V  +  G H A N      + S    D +  ++AL  F   +G G+R+           
Sbjct: 283 AVTLNAPGRHNALNAAAAAAVASEEGIDDEAILRALGGF---QGTGRRFDFLGEFSLQHV 339

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G   L+D+ Y  +P  + A I       P    RR+ ++         ++  + D 
Sbjct: 340 NNKPGKVMLVDD-YGHHPTEVDATIKAARAGWPD---RRLVMVFQPHRFTR-TRDLYDDF 394

Query: 393 AEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV------- 442
           A VLS  ++     V+ +G H +   D+      +     +D + +   ++L        
Sbjct: 395 ANVLSQVDVLLMLDVYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFL 454

Query: 443 -DGDVVVVKSSNSCGFYRLINLLLE 466
            +GD+++ + + + G  R+  +L E
Sbjct: 455 QEGDLILTQGAGNIG--RVARVLAE 477


>gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas
           sp. 3As]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 157/377 (41%), Gaps = 61/377 (16%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+  IG   N  GV   L +     ++ + E  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGVNAKLGQG----EYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P +AV+T I   H+  +      +  A  +    L   G   L  
Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCV 217

Query: 228 DDSFFELLKAKSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ------L 276
           DD+            GI     K I S+G +++A  Q+R     +E + M         +
Sbjct: 218 DDAAVR---------GIMPFVSKPITSYGFAEDA--QVRAIDVRAEGAQMHFTVLRRNGV 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR---- 331
           Q   + V  +  G H  QN L  + + + L  D D AI +AL+ F    G G+R++    
Sbjct: 267 QLPPLAVTLNLPGRHNVQNALAAIAVATELNVD-DAAIQRALAGF---TGVGRRFQRYGE 322

Query: 332 -CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A + G FTLID+ Y  +P  M A ++      P   GRR+ VL         ++    
Sbjct: 323 VAAHHGGHFTLIDD-YGHHPVEMAATLAAARGAFP---GRRL-VLAFQPHRYTRTRDLFE 377

Query: 391 DLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQS 439
           D  +VL   +   ++ V+ +G   L   D  +L R++ V       + E +  L   I  
Sbjct: 378 DFVKVLGEADAVLLAEVYSAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILE 437

Query: 440 SLVDGDVVVVKSSNSCG 456
              +GDV++   + S G
Sbjct: 438 MAREGDVLICMGAGSIG 454


>gi|187932076|ref|YP_001892061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|226711911|sp|B2SDR8|MURD_FRATM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187712985|gb|ACD31282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 53/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK  Y+       ++Q+ +       +        K +++V 
Sbjct: 202 VYD----------VHN-GIK--YA------GEYQIIRGAIYRNST--------KLLDIVE 234

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIIKKVNGTTYI 289

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327


>gi|50913664|ref|YP_059636.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10394]
 gi|139474372|ref|YP_001129088.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes str.
           Manfredo]
 gi|59798145|sp|Q5XDR0|MURC_STRP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224740|sp|A2RGA7|MURC_STRPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50902738|gb|AAT86453.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10394]
 gi|134272619|emb|CAM30886.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes str.
           Manfredo]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  +  DF      + +  S  +V+ QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +D A+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
 gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  IIA+TG+ GK+T   ++   L     +    G    +IG+P  L  + +     + E
Sbjct: 98  EGAIIAVTGTNGKSTVTALIAHILQQSGISAVAAG----NIGLP-ALDTLALGCQVTVLE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I+      RP IAV+  +   HL+ +   E    AK  IF          LN
Sbjct: 153 LSSFQLETIQTF----RPDIAVLLNVTEDHLNRYDTFEHYVDAKERIFLNQTAEDWCVLN 208

Query: 227 YDDSFFELLKAKSHALGIKTIYS 249
           +DD     L + +H    +  +S
Sbjct: 209 HDDPVIRTLTSDNHIPARRVFFS 231


>gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 27/282 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLT 152
           L++  + ARL ++   +A+ G+ GKTTT  M+ +A  L     TY  IG     +G    
Sbjct: 93  LHRSQMLARLLNERNGVAVAGAHGKTTTSSMIALAMELCGTDPTY-IIGGEIMDMGTNAK 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211
             +       G   +  +   +  FL +   P + V+T I   HL N+ G    +  A  
Sbjct: 152 AGQ-------GKCVVAEADESDGSFLQYY--PSLGVVTNIEADHLENYGGDFNRLKEAYV 202

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +    ++  G   +  DD     L  +  +  I    ++G   N D+  R+ +       
Sbjct: 203 QFLNQIKPDGKAVVCGDDPNIRELLPRVQSPTI----TYGIETNCDYTAREIELGDRCVT 258

Query: 272 MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            ++    + +  V   + G H   N + T+ +        D  +KAL  FH   G  +R+
Sbjct: 259 FKMYQGDRELGTVELSVPGRHNVYNAMATVIVCMEAGIPFDEVVKALRHFH---GAKRRF 315

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           +    +    +ID+ Y  +P  ++A I+     +    G+RI
Sbjct: 316 QVLGEKNGILIIDD-YAHHPTEIQATIA-----AAKATGKRI 351


>gi|56707593|ref|YP_169489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670064|ref|YP_666621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456664|ref|ZP_03665137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370111|ref|ZP_04986117.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874414|ref|ZP_05247124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|62900472|sp|Q5NHK3|MURD_FRATT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595657|sp|Q14J05|MURD_FRAT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|54113905|gb|AAV29586.1| NT02FT1066 [synthetic construct]
 gi|56604085|emb|CAG45084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320397|emb|CAL08467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568355|gb|EDN34009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840413|gb|EET18849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158751|gb|ADA78142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 53/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK           ++Q+ +       +        K +++V 
Sbjct: 202 VYD----------VHN-GIKYA--------GEYQIIRGAIYRNST--------KLLDIVE 234

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNSTTYI 289

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327


>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
 gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 20/139 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TG+ GK+TT  +++  LS     Y   G    +IGVP+  A+       G + L 
Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPIAG----NIGVPVLQAKASK----GGYVLE 156

Query: 169 MSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +S      F   LV+     IAV+  I P HL     +E   +AK++IF+ ++K     +
Sbjct: 157 LS-----SFQLDLVKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGII 211

Query: 226 NYDDSF----FELLKAKSH 240
           N D+ +    F  L+ K H
Sbjct: 212 NIDNDYCHEIFTNLQQKHH 230


>gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 540

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHI 147
           + AL+++A A     +A ++AITG+ GKTTT  +         K  A  G+ +      +
Sbjct: 132 ISALSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGKKVAVAGNISPAALEKL 191

Query: 148 GVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              L LA   VD+ D  + EL    L      TH +    A +  I   HL     ++  
Sbjct: 192 MNCLDLADQIVDMSDVWVLELSSFQL----VYTHTLNATAATVLNITQDHLDWHGDMQAY 247

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           A AK+ IF          LN DDS    L +    +  K+I +FG ++
Sbjct: 248 AEAKSRIFGA---DTVCILNRDDSLVMGLLSDEQKVD-KSIVTFGSNR 291


>gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
 gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
          Length = 438

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIAITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  I+E  +   T  
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG     D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +         +++KAL+ F    G   R++  L+     
Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 144

 Score = 46.6 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 S 142
           +
Sbjct: 135 T 135


>gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
 gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
          Length = 466

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 150/367 (40%), Gaps = 44/367 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L         G F + 
Sbjct: 108 IAVAGTHGKTTTTSLVASILAEGKLDPTF-VIGGRLNSAGANAKLGT-------GEFMVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  +  P IAVIT I   H+  +      +  A  E  + L   G   +  
Sbjct: 160 EADESDASFLNLM--PVIAVITNIDADHMETYGHDFARLKQAFVEFTQRLPFYGVAAVCV 217

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E++   S     KTI ++G S+ A  +    + C  Q    V  + ++ +++  
Sbjct: 218 DDPCVREIMPFVS-----KTIVTYGLSEQAQIRAVNVQACQGQMKFTVLREDEAPLDITL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFFT 340
           +  G H  +N L  + + + +    +  + AL  F+   G G+R++      A   G F 
Sbjct: 273 NLPGDHNVRNSLAAIAVATEIGVSDEAIVAALEKFN---GVGRRFQHYGEVAAKEGGHFL 329

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---S 397
           ++D+ Y  +P  M A ++      P    +R+ +             F  D  +VL    
Sbjct: 330 VVDD-YGHHPVEMAATLAAARGAYPD---KRLVLAFQPHRYTRTRDCFE-DFVKVLGTPD 384

Query: 398 LYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
           L  +S V+ +G   +   D  +L R++ V       + E M+ +   I +   DGD+V+ 
Sbjct: 385 LVILSEVYSAGEAPIVAADGRSLARAVRVAGRTEPVFVEDMNEMKSTILNIARDGDLVIT 444

Query: 450 KSSNSCG 456
             + S G
Sbjct: 445 MGAGSIG 451


>gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans
           C54]
          Length = 468

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 153/374 (40%), Gaps = 55/374 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L +     D+ + E  
Sbjct: 108 IAVAGTHGKTTTTSLVASILAAGDLDPTF-VIGGRLNSAGANARLGQG----DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P +A++T I   H+  +   +  + SA  E  + L   G+  L  
Sbjct: 163 ES---DASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCT 217

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------- 279
           DD+   E++   S     + I S+G   N D  +R ++  ++ + M   +Q         
Sbjct: 218 DDANVREIMPFVS-----RPITSYG--LNEDAMVRGYEVQADGTRMRFNVQRSHRDTLLP 270

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-------- 331
            ++V  +  G H  +N L  + + + L    +    AL+ F   +G G+R+         
Sbjct: 271 PLQVELNLPGLHNVRNALAAIAVATELGVSDEAIRDALASF---KGVGRRFTQTGEFPVP 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G FT+ID+ Y  +P  M A ++      P    RRI +             F  D
Sbjct: 328 AVHGGGTFTVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-D 382

Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSS 440
              VL   +   ++ V+ +G   L   D  AL R++ V       + E +  L   +   
Sbjct: 383 FVRVLGTADAVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVADLPQAVVDF 442

Query: 441 LVDGDVVVVKSSNS 454
           + DGDVV+V  + S
Sbjct: 443 VRDGDVVIVMGAGS 456


>gi|294501560|ref|YP_003565260.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|295706908|ref|YP_003599983.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
 gi|294351497|gb|ADE71826.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|294804567|gb|ADF41633.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 38/266 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  ML   +   + T   IG      GV         D  +  FE  
Sbjct: 103 TSVAVTGAHGKTSTTGMLAHVIQGAEPTSYLIGDGTGK-GVK--------DSKYFAFE-- 151

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL++   P  A++T I   H   F+ I+++ SA  E+   L+    I   
Sbjct: 152 ---ACEYRRHFLSYT--PDYAIMTNIDFDHPDYFANIDDVFSAFQEM--ALQVKKGIIAC 204

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD   + ++AK     +  +Y +G  +  DFQ R   + +  +  +V ++     S E+
Sbjct: 205 GDDEHLQQIQAK-----VPVLY-YGLGEENDFQARNIVKSTTGTTFDVFVRNTFHASFEI 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              G G H   N+L  L ++++    ++D A+     F   +G  +R+    N G   LI
Sbjct: 259 P--GYGDH---NILNALSVIALCHYEEIDVAV-LQERFKTYQGVKRRF-SEKNVGKQVLI 311

Query: 343 DESYNANPASMKAAISVLSQISPHGE 368
           D+ Y  +P  + A IS   Q  P+ E
Sbjct: 312 DD-YAHHPTEINATISAARQKYPNRE 336


>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.4-21]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 157/401 (39%), Gaps = 74/401 (18%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           ++ +DM+     L++    +   L A    +  + +  R  +K  I+ ITGS GK+T   
Sbjct: 63  LLESDMIVISPGLAVKTLEIQTALKAGVEVIGDIELFCRAATKP-IVGITGSNGKST--- 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           + T+     K     +G   N IG+P  L+ +  D +  + EL    L      T+ ++ 
Sbjct: 119 VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSSFQLET----TYSLKA 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A +  +   H+  +  +E+   AK  I+    K G   LN +D               
Sbjct: 173 AAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNEDRL------------- 216

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQ 294
               +FG+++N       + + S   W++ +  GK   +V             +G H   
Sbjct: 217 ----TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVILPCEEATLVGRHNYM 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L    +   +  ++D+   AL  F   +G   R++ A        I++S   N  S  
Sbjct: 272 NILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHQANGIRWINDSKATNVGSTV 328

Query: 355 AAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AA++ L     + EG+   +LG      D  E+ EL    HI    +   +      L+ 
Sbjct: 329 AALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI----ICYCFGRDGALLAK 379

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 380 F-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|62178693|ref|YP_215110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224581969|ref|YP_002635767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|75484866|sp|Q57TD2|MURD_SALCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62126326|gb|AAX64029.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466496|gb|ACN44326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322713146|gb|EFZ04717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 438

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 151/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++  I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQEPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLTRYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414


>gi|21909788|ref|NP_664056.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS315]
 gi|28896519|ref|NP_802869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           SSI-1]
 gi|25453115|sp|Q8K8J5|MURC_STRP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21903973|gb|AAM78859.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes MGAS315]
 gi|28811773|dbj|BAC64702.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes SSI-1]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  +  DF      + +  S  +V+ QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +D A+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|15674501|ref|NP_268675.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes M1
           GAS]
 gi|56808749|ref|ZP_00366467.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Streptococcus
           pyogenes M49 591]
 gi|71910104|ref|YP_281654.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS5005]
 gi|94987921|ref|YP_596022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS9429]
 gi|94991805|ref|YP_599904.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS2096]
 gi|94993681|ref|YP_601779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10750]
 gi|209558848|ref|YP_002285320.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           NZ131]
 gi|25008814|sp|Q9A1C7|MURC_STRP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224736|sp|Q1JDE8|MURC_STRPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224737|sp|Q1JNC1|MURC_STRPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224739|sp|Q1J8C6|MURC_STRPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706332|sp|B5XJW3|MURC_STRPZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13621603|gb|AAK33396.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes M1 GAS]
 gi|71852886|gb|AAZ50909.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS5005]
 gi|94541429|gb|ABF31478.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS9429]
 gi|94545313|gb|ABF35360.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS2096]
 gi|94547189|gb|ABF37235.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10750]
 gi|209540049|gb|ACI60625.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes NZ131]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  +  DF      + +  S  +V+ QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +D A+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
          Length = 461

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 26/210 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
           +A    L IPV    D L         ARL      IA+ G+ GKTTT  ML ++L    
Sbjct: 86  LARAAELGIPVVHRSDAL---------ARLMDGLRPIAVAGTHGKTTTTSMLAVSLGELG 136

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +K +YA  G  +    VP + A        G  E+ ++   E     H   P +A++  +
Sbjct: 137 LKPSYAIGGDLD----VPGSNAL------HGDGEIFVAEADESDRSFHKYAPEVAIVLNV 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H +N++ ++EI  A  E F G +   GT+ ++ D      L ++    G++ + ++G
Sbjct: 187 ELDHHANYASMDEI-YASFETFAGRIVPGGTLVISADHEGARELTSRLS--GVRVV-TYG 242

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           + ++AD ++        +S + V L G+ +
Sbjct: 243 EREDADVRVLSVVAQGLKSEVTVLLDGQEI 272


>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 21/162 (12%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           ++LG +   A  AR    A ++AITGS GK+T    +T  +  + +      +   + G+
Sbjct: 92  EILGDIELFAREAR----APVVAITGSNGKST----VTALVGEMARAAGLNVAVGGNFGI 143

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P        DV+  + EL    L      T  + P  A +  I+  HL  +  +E+ A+A
Sbjct: 144 PALDLLNDADVELYVLELSSFQL----ETTESLAPVAATVLNISADHLDRYESLEDYAAA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           K  IF    +T T  +N DD      +  S A G + + SFG
Sbjct: 200 KERIF---RRTETAVINRDDP-----RVWSMAGGARRV-SFG 232


>gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
 gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 152/378 (40%), Gaps = 45/378 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           A L    T IAI G+ GKTTT  ++   +A + +  T+  IG   N  GV   L +    
Sbjct: 99  AELMRLKTGIAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGVNARLGQG--- 154

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
            D+ + E   S   +  FL   + P +AV+T I   H+  +      +  A  +    + 
Sbjct: 155 -DYIVVEADES---DASFLN--LSPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMP 208

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT  L  DD     +  +        I S+G  + A+ +    +    Q    VQ + 
Sbjct: 209 FYGTAILCTDDPAVRDIVPQVTC----PISSYGFEEGAELRAVNVRAVDGQMHFTVQRRN 264

Query: 279 ----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--- 331
                 ++VV +  G H   N L  + +   L        KAL+ F   +G G+R++   
Sbjct: 265 GVVLPDLDVVLNLAGRHNVLNALSAIAVAVELNIADAVVQKALAGF---KGVGRRFQRYG 321

Query: 332 --CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A + G FTLID+ Y  +P  M A ++      P   GRR+ +             F 
Sbjct: 322 EVRAQDGGTFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE 377

Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQ 438
            D  +V++  +   ++ V+ +G   +   D   L R++ V       + + +  +   I 
Sbjct: 378 -DFIKVIAQADAVLLAEVYGAGEAPIVAADGRTLARALRVAGRIEPVFVDDIAAMPQAIA 436

Query: 439 SSLVDGDVVVVKSSNSCG 456
            +  DGDVV+   + S G
Sbjct: 437 DNARDGDVVLCMGAGSIG 454


>gi|46580907|ref|YP_011715.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601792|ref|YP_966192.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|48428298|sp|P61678|MURC_DESVH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224686|sp|A1VBE9|MURC_DESVV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46450327|gb|AAS96975.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562021|gb|ABM27765.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|311234598|gb|ADP87452.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 454

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 149/375 (39%), Gaps = 48/375 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR   T IAI G+ GKTTT   LT A+  +  K     IG   N  G    L  
Sbjct: 98  LAELMRLR---TGIAIAGTHGKTTTTS-LTAAIFDVAGKDPTVIIGGRLNAYGANARLGE 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                  G + +  +   +  FL     P + V+T +   H+  ++G +EI  A      
Sbjct: 154 -------GEYLIAEADESDGSFLCLF--PIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMN 204

Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWM 272
            +   G   +  DD     L  + K   +     Y FGK    D  LR +   C+E S  
Sbjct: 205 KVPFYGANVVCGDDPGVRRLLPQVKRRVV----TYGFGK----DNALRAEVTSCAETSVF 256

Query: 273 EVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V L+G  +  VH G  G H   N L  +G+        +  I+ L+ F    G G+R+ 
Sbjct: 257 TVFLRGGRLGEVHLGQPGRHNILNALAAIGVALEAGISPEHCIEGLARFG---GVGRRFE 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEM 381
               +   T++D+ Y  +P  + A ++    +           PH   R  A+ G+ C++
Sbjct: 314 RRGERDGVTVVDD-YGHHPVEIAATLATARSVYPDRRLVVVFQPHRFSRTQALFGEFCKV 372

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQS 439
            E      +D   +  +Y  S   + G    +L   + +  +  V Y ++ D +   +  
Sbjct: 373 FE-----PVDKLLLTEIYPASEKPIPGVSGQSLAQGIRQVSNTDVTYYQSFDEILAALPG 427

Query: 440 SLVDGDVVVVKSSNS 454
            L  GDV++   + S
Sbjct: 428 VLRPGDVLLTLGAGS 442


>gi|84495983|ref|ZP_00994837.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
 gi|84382751|gb|EAP98632.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
          Length = 488

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 13/160 (8%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  MLT+AL  + +  ++A  G      G     A    DV F + E  
Sbjct: 123 VAVAGANGKTTTTSMLTVALQAADLDPSFASGGELT---GQGTNAAWTGGDV-F-VVEAD 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL +   P +A++T + P HL  +   + +  A A   + +   G +    D
Sbjct: 178 ES---DGSFLVY--GPEVAIVTNVQPDHLDFYGTFDNVQRAYASFADSIRSDGLLVACAD 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           DS   L  A + A+G   + ++G    AD  L   +   E
Sbjct: 233 DS-GSLFLASNAAIGGTRVLTYGFDDTADLTLADHRADDE 271


>gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 494

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR +     F AI G + DG  +I  A++ GA  V+     + + G      +
Sbjct: 27  VKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANAVIAQACPLNTHGKTEVRDN 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+  VDD+   L+ LA          +IA+TG+ GKTT  +++      +    A +G+
Sbjct: 87  VPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQWFELVSCHAAVLGT 146

Query: 143 YNN 145
             N
Sbjct: 147 TGN 149


>gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 141/365 (38%), Gaps = 40/365 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   RLR     IAI G+ GKTTT  +              I      IG  L +    
Sbjct: 98  LAELMRLRQG---IAIAGTHGKTTTTSLTASIFDEAGLDPTVI------IGGRLNVYGAN 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +  G + +  +   +  FL  L  P I V+T +   HL ++   E I SA  +    +
Sbjct: 149 AHLGHGEYLIAEADESDGSFLCLL--PIINVVTNVDEDHLDHYKTREAINSAFVQFMNNV 206

Query: 218 EKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LRKWKQCSEQSWME 273
              G  I    D    ELL         + + ++G +++   +   L   +    Q W+ 
Sbjct: 207 PFYGLNIVCGDDPGVLELLPQVK-----RPVLTYGFAEDNALRAVPLESGRISRFQVWLH 261

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +  G   EV     G H   N L ++G    +    +     L  F   +G G+R+   
Sbjct: 262 DEKLG---EVSLPQPGRHNILNALASIGAAMEVGISFEKCAAGLCGF---KGVGRRFEFK 315

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQ 386
             +   T++D+ Y  +PA + A ++   Q+    EGRRI                GE  +
Sbjct: 316 GEKQGVTVVDD-YGHHPAEIAATLATARQVF---EGRRIVAAFQPHRFSRTEAHFGEFCK 371

Query: 387 SF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD 443
            F ++D   +  +Y  S   + G    +L   + +  S  V Y +T+D L   +   L +
Sbjct: 372 VFNNVDQLLLTEIYAASENPIPGVSGQSLAQGIRQVSSTPVEYFQTLDDLARALPDILQE 431

Query: 444 GDVVV 448
           GDV++
Sbjct: 432 GDVLL 436


>gi|220929148|ref|YP_002506057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulolyticum H10]
 gi|254766044|sp|B8I2T4|MURD_CLOCE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219999476|gb|ACL76077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulolyticum H10]
          Length = 465

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMP--VDVDFGI 164
           A + A+TGS GKTTT  ++   LS  ++ + C +G    +IG PL L+++    + D  I
Sbjct: 117 AQVFAVTGSDGKTTTTTLIYKTLS--EEGFKCWLGG---NIGTPL-LSKIDDVAETDKVI 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I+       P +AVIT I+P HL     ++E   AK  IF    +   + 
Sbjct: 171 LELSSFQLMTIKDC-----PSVAVITNISPNHLDVHKSLQEYIDAKKNIFINQNENDKLV 225

Query: 225 LNYDDS 230
           LN+D+ 
Sbjct: 226 LNFDNE 231


>gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
 gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
          Length = 482

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 160/392 (40%), Gaps = 54/392 (13%)

Query: 56  FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA    KGA ++VV+T +      V +     IPV    ++LG L       R R  
Sbjct: 71  FIGHAADNIKGASVLVVSTAIDPENPEVKAAIEQRIPVVRRAEMLGEL------MRYRHG 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +LT  L+   +  TY  IG   N  GV   L           +
Sbjct: 125 ---IAVAGTHGKTTTTSLLTCMLAEEGMDPTY-VIGGLLNRTGVNAALG-------ASRY 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL  P  A++T I   H+  + G  + +     +    L   G   
Sbjct: 174 IVAEADESDASFL-HL-EPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAV 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD+    +  +      + + ++G + + D +    +Q   +S   V  + +  + +
Sbjct: 232 VCGDDANIREIMPRI----ARPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRL 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQGF 338
             +  G H   N L  +G+ +      D AI +AL  F    G G+R++      L QG 
Sbjct: 288 TINQPGLHNVLNALAAIGVATDEGVS-DAAIGRALEGF---SGVGRRFQVQGEFGLEQGT 343

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D+ Y  +P  ++A I    Q  P    RR+ ++            F  D  +VLS 
Sbjct: 344 VKLVDD-YGHHPKEVEATIKAARQSHPD---RRLVMMFQPHRFSRTRDCFD-DFVDVLSQ 398

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH 425
            +   +  V+ +G   +   D  +L RSI + 
Sbjct: 399 VDQLLLLEVYPAGEKPIVGADSRSLARSIRLR 430


>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
 gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
          Length = 505

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 151/405 (37%), Gaps = 45/405 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  +  DSR   P   F A++G H DGH ++  A  +GA   VV       +  L   +
Sbjct: 22  MVTRVVYDSRQATPGSLFVALRGTHTDGHCYLADAASRGAVAAVVEEWPSQDVPGLRT-I 80

Query: 86  FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V D   AL   A+AAR      S   +I +TG+ GKTTT  ++   L +       IG
Sbjct: 81  ARVSDTRVALA--AIAARFYGHPASDLGLIGVTGTDGKTTTTFLIDAILRTAGYRTGLIG 138

Query: 142 SYNNHIG-----------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +    IG                 V   LARM    V + + E   SH  E+  L H   
Sbjct: 139 TVALRIGDEFVAHDLRQTTPESLDVQAFLARMRATGVAWAVVE-ATSHGLELHRLDHC-- 195

Query: 184 P-HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT------IFLNYDDSFFELLK 236
           P  IAV+T +   HL     IE    AK  + E +           I LN DD   E  +
Sbjct: 196 PFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFVRDRPERAYPRGIVLNADD---EGAR 252

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           + +   G   I  +  +  A       +   + +   ++   ++ +V     G    +N 
Sbjct: 253 SLARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRLRYGDQAADVHLRLFGLWNVENA 312

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L   G   +L   +D  +  L       GR     C   Q F  ++D  Y   P S +  
Sbjct: 313 LAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDC--GQPFRVIVD--YAHTPKSFERV 368

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +   ++    GR I V G   E   + +     +A  L+ + +
Sbjct: 369 LPLARSLA---RGRVIVVFGSAGERDRIKRRLQGAIAARLAEFAV 410


>gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
 gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
          Length = 520

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 123/330 (37%), Gaps = 36/330 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR++ P + F A  G  +D  + I  A+  G   V+      +      IP  
Sbjct: 25  IQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEKQGFSWKPEWKIPNL 84

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           G+  +     K+A  V         ++ ITG+ GKTT        + ++ +  A IG+  
Sbjct: 85  GISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTAIIGTLG 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAVIT 190
           +     L  A         + +L   +L    R L      H             IAV+T
Sbjct: 145 HGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEFSIAVLT 204

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            +   HL     ++  A+AKA++F  EGL+      LN D+     L   S  L  K + 
Sbjct: 205 NLTRDHLDYHGSMDAYAAAKAKLFFWEGLQHA---VLNLDEVLGVEL---SQQLAWKDVS 258

Query: 249 SFGKS-KNADFQLR-----------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             G   +  D   R             +  ++    +V+   +   +  +  G + A N+
Sbjct: 259 IIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNL 318

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           L  L  +     D+D AI AL    P  GR
Sbjct: 319 LAVLATLLASNVDLDDAITALQQVQPIPGR 348


>gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
          Length = 467

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G + +A  Q+R     +    M    ++     +++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVQARDGKMHFTAMREDAAPLDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337
           V +  G H  QN L  + I + L        +AL+ F+    R +RY            G
Sbjct: 271 VLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVSSEGKTNG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDV
Sbjct: 386 TVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDV 445

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 446 VITMGAGSIG 455


>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 534

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 93/240 (38%), Gaps = 37/240 (15%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IG 79
           G ++G+S DSR   P + F  IKG   DGH ++   + KG   VV   D ++S     + 
Sbjct: 52  GEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVSAVVAQYDCLSSEQKKLLT 111

Query: 80  SLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            + IPV  V D   A   LA          LR          +       ++L+     +
Sbjct: 112 QIDIPVILVTDSRKAFAILASKYYNYPGDSLRVTGVTGTKGKTTTVNLIDKLLSEG-KEV 170

Query: 134 KKTYACIGSYNNHIG----VPLTLARMPVDVD--FGIFE-LGMSHLGEIRFLTHLVRP-- 184
           K     IG+ N  I        T    P++++   G  E  G SH+  +   +H +    
Sbjct: 171 K--TGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASHV-TLEVSSHAISQLR 227

Query: 185 ------HIAVITTIAPAHLSNFSGIEEIASAKAEIF-------EGLEKTGTIFLNYDDSF 231
                  IAV T +AP HL   + ++E    K  IF       E  +K     +N DD +
Sbjct: 228 IAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEKNDKPKLAVINLDDKY 287


>gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
 gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
          Length = 484

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 20/223 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S+DSR    + AF A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 28  IESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFED----QKRVF 83

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 84  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
            I  P         +D       +S+  + + L   V  H             +A+ + +
Sbjct: 144 GI-YPNLRESTHTTLDILSLYQTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 202

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 203 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 244


>gi|298507096|gb|ADI85819.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens
           KN400]
          Length = 462

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 45/278 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  M+   L+   I  T   IG   N +G    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHGGIDPTI-VIGGKLNTLGTNAKLGQ-------GQFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P IAV+T I   HL  ++ GIE+I     +    +   G   L  
Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D +  E+L         K   ++G S  AD +              ++L+G +   V H
Sbjct: 218 EDRNIAEILPRVK-----KRFVTYGLSSQADIRA-----------THIRLEGGTTSFVAH 261

Query: 287 GIGYHM---------AQNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQ 336
             GY M         A N+L  L  +++   ++D     +   F    G G+R++     
Sbjct: 262 YKGYRMGEVSFSMPGAHNVLNALACIAV-AMELDVPFSQIQEGFATFGGVGRRFQVKGEV 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              T++D+ Y  +PA ++A ++      P    RR+ V
Sbjct: 321 NGITVVDD-YGHHPAEIRATLAAGKSGWPE---RRLVV 354


>gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
 gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
          Length = 512

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166


>gi|39998159|ref|NP_954110.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sulfurreducens
           PCA]
 gi|48428299|sp|P61679|MURC_GEOSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39985105|gb|AAR36460.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens PCA]
          Length = 462

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 45/278 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  M+   L+   I  T   IG   N +G    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHGGIDPTI-VIGGKLNTLGTNAKLGQ-------GQFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P IAV+T I   HL  ++ GIE+I     +    +   G   L  
Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D +  E+L         K   ++G S  AD +              ++L+G +   V H
Sbjct: 218 EDRNIAEILPRVK-----KRFVTYGLSSQADIRA-----------THIRLEGGTTSFVAH 261

Query: 287 GIGYHM---------AQNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQ 336
             GY M         A N+L  L  +++   ++D     +   F    G G+R++     
Sbjct: 262 YKGYRMGEVSFSMPGAHNVLNALACIAV-AMELDVPFSQIQEGFATFGGVGRRFQVKGEV 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              T++D+ Y  +PA ++A ++      P    RR+ V
Sbjct: 321 NGITVVDD-YGHHPAEIRATLAAGKSGWPE---RRLVV 354


>gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 485

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 131/327 (40%), Gaps = 52/327 (15%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+   L IPV    D+LG          L   +T + I G+ GKT+T  M  +A+
Sbjct: 88  NPELVAA-RELGIPVIRRSDLLG---------ELMEGSTQVLIAGTHGKTSTTSMAVVAM 137

Query: 131 SS--IKKTYACIGSYNN-----HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +  +  ++A  G  N      H G            D  + E   S    +R+     +
Sbjct: 138 QAAGMDPSFAIGGQLNKAGTNAHQGTG----------DAFVAEADESDASLLRY-----K 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKS 239
           P+IAVIT I P HL  F   E    A  E+FE     L    ++ +  DD    +L  K 
Sbjct: 183 PNIAVITNIEPDHLDFFKSEE----AYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKI 238

Query: 240 H-------ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           H        +G  T+ +  +  + A   +  ++     +   + + G+  EVV    G H
Sbjct: 239 HEKHKDIKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRH 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNAN 349
           M  N    L    I   D+      +S F     R + Y   + +G F  I+  + Y  +
Sbjct: 299 MVLNAAAALTAGVIAGGDLFKLAAGISDFSGVRRRFE-YHGVVAEGDFAGIELYDDYAHH 357

Query: 350 PASMKAAISVL-SQISPHGEGRRIAVL 375
           P  + A ++   +++   G+GR + + 
Sbjct: 358 PTEVSAVLTAARAKLQARGQGRLLVIF 384


>gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 487

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 182 VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P + V+T I   H+  + G  E +     +    L   G   +  DD     L  +  
Sbjct: 188 LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVG 247

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299
               + + ++G +++AD +L  + Q  +Q    VQ +GK  +++  +  G H A N    
Sbjct: 248 ----RPMLTYGFAEDADVRLVNYTQTGQQGHFTVQRKGKPELDITLNIPGKHNALNATAA 303

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKA 355
           + + +    D D  ++AL  F   EG G+R+          G   L+D+ Y  +P+ +  
Sbjct: 304 IAVATEEGVDDDAILRALVEF---EGTGRRFDHLGEFDTGNGKVMLVDD-YGHHPSEVDV 359

Query: 356 AIS 358
            I 
Sbjct: 360 TIK 362


>gi|298252630|ref|ZP_06976424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
 gi|297532994|gb|EFH71878.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
          Length = 538

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 17/219 (7%)

Query: 49  PHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           P  D HDF      K   +V        T  +    S +IP+    +V  A      + R
Sbjct: 67  PDADIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPIMS--EVELAWRLRVPSQR 124

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A  I +TG+ GKT+T EM +  L++       +G    +IG  ++ A +  + D  
Sbjct: 125 TNKPAYWIGVTGTNGKTSTTEMTSAMLTACGLNAPAVG----NIGKSVSHAALECEHDAL 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L      T  +    A IT IA  HL    G+E  A  K+++F  ++K   +
Sbjct: 181 CVELSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSKVFNNVQK-ALV 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLR 261
           +   D+   +L      A G K I ++  + K+ +  ++
Sbjct: 236 YNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVK 274


>gi|316933187|ref|YP_004108169.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
 gi|315600901|gb|ADU43436.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
          Length = 468

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 42/327 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      L       IPV    ++L  L +L          + +AI G+
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L +       I G   N  G   T AR+    D+ + E   S   + 
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVINGGIINAYG---TNARLGAG-DWMVVEADES---DG 168

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            FL   +   +A++T + P HL +F   + +  A     E +   G   +  D    + L
Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288
             K   +  + I ++G++  AD +L         S  +V  + +     H          
Sbjct: 227 VGK---IEDRRIITYGENPQADARLLDLTPSGGGSTFKVAFRDRKAGTAHEIADLMLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  
Sbjct: 284 GRHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGEWNGVTIIDD-YGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375
           +P  + A +    Q +    G+ IAV+
Sbjct: 340 HPVEIAAVLKAARQST---AGKVIAVV 363


>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
          Length = 237

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 32/214 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             IAV T +   HL      +E    K+ +F  L
Sbjct: 195 -KIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 227


>gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 491

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSDDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLRVTLNAPGRHNALNATAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 467

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +       I K Y   G    H+G  +  A +P+  +    ++ +
Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVAPEDVAV 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + ++    P+IAV+T + P HL +   ++E   AK  I    ++     L Y++
Sbjct: 173 VELSSFQLISMHSSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232

Query: 230 S 230
            
Sbjct: 233 E 233


>gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
 gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
          Length = 499

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +     +PV
Sbjct: 34  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAGVPV 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 94  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153


>gi|16080031|ref|NP_390857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310923|ref|ZP_03592770.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315250|ref|ZP_03597055.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320167|ref|ZP_03601461.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324448|ref|ZP_03605742.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183540|sp|P40778|MURC_BACSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2293216|gb|AAC00294.1| putative UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis]
 gi|2635463|emb|CAB14957.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485412|dbj|BAI86487.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 47/295 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S  IPV      LG   K         K T +A+TG+ GKT+T  +L   + + K T   
Sbjct: 82  SEGIPVIRYHKFLGDYMK---------KFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG             +   + ++ +FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD---------GTGQGNENSEYFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             FS I+++  A  E+   L+    I    DD        K HA  +  +Y +G  +  D
Sbjct: 177 DYFSSIDDVFDAFQEM--ALQVNKGIIACGDDEHL----PKIHA-NVPVVY-YGTGEEND 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI- 314
           FQ R   + +E +  +V ++    +  +    G+H   N+L +L ++++    ++D++I 
Sbjct: 229 FQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHH---NVLNSLAVIALCHYEEIDSSII 285

Query: 315 -KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             AL  F    G  KR       G   LID+ Y  +P  +K  I    Q  P  E
Sbjct: 286 KHALKSF----GGVKRRFNEKQLGDQVLIDD-YAHHPTEIKVTIEAARQKYPDRE 335


>gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. WCH70]
 gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           WCH70]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           S+A  I ITGS GKTTT  ++   L   +K     G    +IG     +A+     ++ +
Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG----NIGTAACEVAKKAEASNWLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  IR      RP I+V+  I  AHL      E  A AKA IF+         
Sbjct: 166 TELSSFQLAGIRDF----RPRISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAV 221

Query: 225 LNYDDSFFELLKAKSHA 241
           +N DD     L    HA
Sbjct: 222 INADDELVMQLAENIHA 238


>gi|325925686|ref|ZP_08187064.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325543902|gb|EGD15307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    DT  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTSSGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 479

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 138/340 (40%), Gaps = 34/340 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+  DSR I     F A++G   DGH FI  A++KGA L++V+ ++    G   + +  
Sbjct: 22  TGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIGYVLIKN 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +   LG L         +    I+ +TG+ GKTTT  +L   L   K   A  G+    I
Sbjct: 82  LRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIEYKI 138

Query: 148 GVPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFLTHLVRPHIAVI 189
           G  +  A    P  +D        +E G+ +           LG +  L        A+ 
Sbjct: 139 GKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEF----DGAIF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E+   AK ++F  L       LN DD + + L+ + H +      S
Sbjct: 195 TNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGKRLQEEFHGI------S 248

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G +K A  Q +       +  +E+ L GK  E     +G     N+L ++ +V  L   
Sbjct: 249 YG-TKQAGVQGKILGFEGGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKELGMS 307

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +     + +     GR +   C   Q +  +ID ++  +
Sbjct: 308 EEEIFAKVELLQGAPGRFETVDCG--QDYMVVIDYAHTGD 345


>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes LO28]
          Length = 178

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ GA 
Sbjct: 3   LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
            ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT   
Sbjct: 63  AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG 148
           ++   +    +    IG+    IG
Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIG 141


>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 476

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 126/322 (39%), Gaps = 32/322 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+   ++++ P + F   KG    G  F+  A+ +GA  +V    +   I    IP  
Sbjct: 10  ITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPIIDKEIPFV 69

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +    L+  +  +AA      ++IAITG+ GKTT    ++  L+++ K  A IG+  
Sbjct: 70  WVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAAVIGTIG 129

Query: 145 NHIGVPLTLARMPVDVDFGIFEL----------GMSH-------LGEIRFLTHLVRPHIA 187
            ++                  EL          G+SH       +G  +           
Sbjct: 130 FYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRLDHCDIDCG 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--- 244
           V   ++  HL +  G+E    AK  + +  +K   + LN DD+F         ++GI   
Sbjct: 190 VFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVLNGDDNF-------CRSVGIYDK 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   SFG   + D  ++   +   ++ + +Q       V    +G +  QN +  L  V 
Sbjct: 240 KKSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAALMAVW 299

Query: 305 ILTADVDTAIKALSVFHPKEGR 326
            L   +D  I+ +      EGR
Sbjct: 300 RLGIPIDDIIEHMWSLKLPEGR 321


>gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Vibrio cholerae LMA3894-4]
          Length = 495

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +     +PV
Sbjct: 30  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAGVPV 89

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 90  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149


>gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
 gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           V  + +DSR +     F AIKG   DG  FI  A++ GA  ++     +   G    S  
Sbjct: 27  VERLELDSRKVTQGTTFVAIKGHAVDGRRFINSAIELGANAIIAEACELHPHGKVERSSG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + +  +D +   L+ LA      S   +I +TG+ GKTT  +++   L  I    A +G+
Sbjct: 87  VSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGTNGKTTITQIMAQWLDLIGHKAAVMGT 146

Query: 143 YNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAV 188
             N     L  A         I +              L +S  G ++     +   + V
Sbjct: 147 TGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGAQYTALEVSSHGLVQGRVKTLPFEVGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            + ++  HL     +EE A AK  +F+      T  +N DD
Sbjct: 207 FSNLSRDHLDYHGTMEEYAEAKFSLFD-QHTCKTAVINIDD 246


>gi|134302471|ref|YP_001122441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|158513856|sp|A4IZG9|MURD_FRATW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134050248|gb|ABO47319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 53/283 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  IA+TGS GK+T   M    L  +      +G    +IG P  L ++    D+ + 
Sbjct: 95  TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L + VR  +  I  ++P HL  +   E+   +K      L K    F 
Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLN----LAKFSNDFF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            YD           H  GIK  Y+       ++Q+ +       +        K +++V 
Sbjct: 202 VYD----------VHN-GIK--YA------GEYQIIRGAIYRNST--------KLLDIVE 234

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342
             + G H  +N+++ L I+  L  D++ AI ++  F     +G  +RC + +     T I
Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIASIKKF-----KGLEHRCKIVKKVNGTTYI 289

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           ++S   N  +  AA++ ++          I +LG + + G+ S
Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327


>gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
 gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
          Length = 464

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 133/334 (39%), Gaps = 34/334 (10%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
           +A    L IPV    D L +     V   LR     IA+ G+ GKTTT  ML +ALS+  
Sbjct: 86  LARAAELGIPVVHRSDALAS-----VMDGLRP----IAVAGTHGKTTTTSMLAVALSALG 136

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  +YA  G  +     P + A        G  ++ ++   E     H   P +A+I   
Sbjct: 137 LDPSYAIGGDLD----APGSNAH------HGEGDVFVAEADESDRSFHKYTPQVAIILNA 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H +N++ ++EI  +       +   GT+ + +       +  +        + ++G+
Sbjct: 187 ELDHHANYASMDEIYESFETFVGKIVPGGTLVVAHGQEGAAEIAHRVSGNPDLIVRTYGE 246

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            + AD ++RK       S + V + G+ +       G H A N +  L     L    D 
Sbjct: 247 DETADVRIRKITPRGLTSEVAVVMDGREIVFTVSVPGRHYAHNAVAALTAGVALGIPADD 306

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              AL  +    G  +R +         +ID SY  +P  M A +  +   S  G+ R +
Sbjct: 307 LAAALGKY---TGVKRRLQLKGEAAGVQVID-SYAHHPTEMTADLEAIR--SAAGDSRIL 360

Query: 373 AV-----LGDMCEMG-ELSQSFHI-DLAEVLSLY 399
            V          E+G E+ Q+  + D + VL +Y
Sbjct: 361 VVFQPHLFSRTQELGKEMGQALALADASVVLDIY 394


>gi|78046387|ref|YP_362562.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|109892756|sp|Q3BXF1|MURC_XANC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78034817|emb|CAJ22462.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    DT  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTSSGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|332523014|ref|ZP_08399266.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314278|gb|EGJ27263.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 444

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 51/337 (15%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N + +A   + +IP     + LG   K  ++           + G+ GKT+T  +L   L
Sbjct: 76  NNEELAYAIAQNIPFKRYHEFLGEFMKQFIS---------FGVAGAHGKTSTTGLLAHVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 127 KNITNTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPYY--PEYSIIT 172

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GIE++ SA  +  + ++K   +F+  +D   EL K  S A     IY +
Sbjct: 173 NIDFDHPDYFTGIEDVFSAFNDYAKHVQK--ALFVYGEDE--ELKKITSSA----PIYYY 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTAD 309
           G  +  DF      + +  S  +V+   + +   H    G H   N    +  + I   D
Sbjct: 225 GFEEKNDFIAFDIIRTTNGSDFKVKHDNQVIGQFHVPAYGRHNILNATAVIANLYIAGVD 284

Query: 310 VDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362
           +D   K +  F    G  +R+    +N    T+I + +  +P  + A I    Q      
Sbjct: 285 MDLVAKHMVTF---SGVKRRFTEKVIND---TIIIDDFAHHPTEIVATIDAARQKYPSKE 338

Query: 363 ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 PH   R IA+L D  +   L+++  + LA++
Sbjct: 339 IVAIFQPHTFTRTIALLDDFAQA--LNEADSVYLAQI 373


>gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1]
          Length = 478

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 115/299 (38%), Gaps = 35/299 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D  L  +++    A L     ++A+ G+ GKT+T  M+T+AL               H G
Sbjct: 94  DQGLQVVHRAVALAALTEGRRLVAVAGTHGKTSTTSMVTVAL--------------QHTG 139

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSN 199
              + A   +  D  +   G  H     F+              P +AV+T + P HL +
Sbjct: 140 ADPSFA---IGGDLSVSGSGAHHGSGDVFVVEADESDGSFTAFAPSVAVVTNVEPDHL-D 195

Query: 200 FSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-- 256
             G E    A  E F E L    T+    DD   EL+   +   GI T+  +G++     
Sbjct: 196 HHGDEATYRAVFERFLERLVPGATLVTCADDPGSELVAVHAERAGI-TVRRYGRTATGSQ 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D +L  +      S    +  G+  E+     G HMA N L      + +  D    ++ 
Sbjct: 255 DARLLDFAPDGVGSRTRFRWGGEEHELALGVPGEHMALNALGAFLAGTAVDQDPAALLEG 314

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L+ F    G  +R+          + D+ Y  +P  + A +    + +P  +GRR  VL
Sbjct: 315 LAGFG---GVQRRFEFKGRVRGVAVYDD-YAHHPTEVAATLRAAREAAPVVQGRRGRVL 369


>gi|306827968|ref|ZP_07461235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC
           10782]
 gi|304429887|gb|EFM32929.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC
           10782]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 130/325 (40%), Gaps = 48/325 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   VA      IP     D LG   K  ++          A+ G+ GKT+T  +L+  L
Sbjct: 74  NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI ++ +A  +  + ++K   +F+  +D   EL K ++ A     IY +
Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309
           G  K  DF      + +  S  +V  QG+ +   H  +  +   N+L  T  I ++  A 
Sbjct: 223 GFEKGNDFIAYDITRTTNGSDFKVIHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           +D A+ A    H K   G + R        T+I + +  +P  + A I    Q       
Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337

Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383
                PH   R IA+L D  C + E
Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362


>gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
 gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
          Length = 499

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +     +PV
Sbjct: 34  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAGVPV 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 94  IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153


>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 32/214 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 30  ITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDV-----NIEI 84

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS        +G
Sbjct: 85  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183
           +    +G            P TL R        + D+ + E+     H+  ++       
Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             IAV T +   HL      +E    K+ +F  L
Sbjct: 202 -KIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 234


>gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
 gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
          Length = 467

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G + +A  Q+R     +    M    ++     +++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVQARDGKMHFTAMREDAAPLDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337
           V +  G H  QN L  + I + L        +AL+ F+    R +RY            G
Sbjct: 271 VLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVFSEGSTNG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDV
Sbjct: 386 TVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDV 445

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 446 VITMGAGSIG 455


>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
 gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
          Length = 494

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AITG+ GKTTT  ++   L +    YA +G    ++G P+    +  DV+    EL   
Sbjct: 124 LAITGTNGKTTTVGLVGSILEAAGAKYAVVG----NVGEPIVTTVLKADVEVLAVELSSF 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      TH + P  AV   +   HL     +E    AKA I+E  +  G ++   D +
Sbjct: 180 QL----ETTHTLSPLAAVCLNVDADHLDWHGSVENYRDAKARIYENTQ-VGCVYDVTDRT 234

Query: 231 FFELLKAKSHALGIKTI-YSFG 251
              ++       G + I Y+ G
Sbjct: 235 VENMVAGAEVIEGARAIGYTLG 256


>gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
 gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  K   +G + I ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGHAVMCLDDAVIRELLPK---VG-RHITTYGFSEDADVRVADYRQVGAQGLFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QGK  + V  +  G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALVRF---QGTGRRF 328


>gi|321312518|ref|YP_004204805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
 gi|320018792|gb|ADV93778.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 47/295 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S  IPV      LG   K         K T +A+TG+ GKT+T  +L   + + K T   
Sbjct: 82  SEGIPVIRYHKFLGDYMK---------KFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFL 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197
           IG             +   + ++ +FE       E R  FL++  +P  A++T I   H 
Sbjct: 133 IGD---------GTGQGNENSEYFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHP 176

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             FS I+++  A  E+   L+    I    DD        K HA  +  +Y +G  +  D
Sbjct: 177 DYFSSIDDVFDAFQEM--ALQVNKGIIACGDDEHL----PKIHA-NVPVVY-YGTGEEND 228

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI- 314
           FQ R   + +E +  +V ++    +  +    G+H   N+L +L ++++    ++D++I 
Sbjct: 229 FQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHH---NVLNSLAVIALCHYEEIDSSII 285

Query: 315 -KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             AL  F    G  KR       G   LID+ Y  +P  +K  I    Q  P  E
Sbjct: 286 KHALKSF----GGVKRRFNEKQLGDQVLIDD-YAHHPTEIKVTIEAARQKYPDRE 335


>gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162]
          Length = 459

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 148/367 (40%), Gaps = 51/367 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T IA+ G+ GKTTT  ML+  L          G  +  I V   L  +  ++  G
Sbjct: 107 MRNYDTSIAVAGTHGKTTTTSMLSHILLK--------GECDPTISVGGILPAIGGNIRVG 158

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  ++   E    FL+    P + +I  +   HL  F  I++I  +  +  E L   G
Sbjct: 159 QSETFLTEACEYTNSFLSFF--PTLGIILNMDADHLDFFKDIDDIRHSFRKFAELLPADG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N D   +E++   +  L  K I ++G   +A++        S+ ++ E      + 
Sbjct: 217 ALIINADTPKYEMV---AENLPCKVI-TYGLEHDAEY------TASDITYDE--FGHPTF 264

Query: 282 EVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V+H+G           G H   N L ++    +L  D +     L  F    G  +R++
Sbjct: 265 HVLHNGEDIGICSLKVPGIHNVSNALASIAAGRLLDLDNEVIFAGLKDF---GGTDRRFQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMG 382
                G  T+ID+ Y  +P  ++A +          +     PH   R  A+L +  +  
Sbjct: 322 YKGKVGEVTIIDD-YAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRTKALLPEFAKA- 379

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            L+ + H+ LA++ +     ++ +S   +   K          Y  T D +  F+  +  
Sbjct: 380 -LTLADHVVLADIYAARETDNLGISSADL--QKQIRELGTPCEYFPTFDEIENFLLENCT 436

Query: 443 DGDVVVV 449
            GD+++ 
Sbjct: 437 QGDLLIT 443


>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A IIAITGS GKTTT    T  +  I K          +IG            D+ + 
Sbjct: 109 TNAKIIAITGSNGKTTT----TSLIYHILKNDGLKVGLGGNIGKSFAKQVADESFDYYVL 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +I+      RPHI+++  ++  HL  ++   EE A AK  I E  E      
Sbjct: 165 EVSSFQLDDIQNF----RPHISLLLNLSQDHLDQYNYNYEEYALAKFRIAENQENDNFFI 220

Query: 225 LNYDD 229
            N DD
Sbjct: 221 YNKDD 225


>gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 481

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 136/369 (36%), Gaps = 43/369 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDF 162
           +R K+TI AI G+ GKTTT  M+   L   +     I G      G    L     D D+
Sbjct: 105 MRLKSTI-AIAGTHGKTTTTSMIAGLLDCGEIDPTVINGGVIEQFGSNARLG----DSDW 159

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S    +R         IAV+T I P HL ++   E +  A  E    +   G 
Sbjct: 160 MVVEADESDGSFLRLDGT-----IAVVTNIDPEHLDHYGDFEGVKRAFVEFIHNVPFYGA 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             L  D    + + AK      + + ++G S  AD      K  +  +  +V ++ +  E
Sbjct: 215 AILCVDHPEVQAVIAKVRD---RRVITYGFSLQADICAVNVKPEAGGNRFDVMVRQRGQE 271

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 V     G H  QN L  + +   +    +   +  + F     R  R      +
Sbjct: 272 DRRIENVFLPMPGRHNVQNALAAIAVSLEMNCSDEVIREGFARFGGVRRRFTRVGTVPVE 331

Query: 337 GFFTLIDESYNANPASMKAAIS--------------VLSQISPHGEGRRIAVLGDMCEMG 382
           G    + + Y  +P  ++A +S              V++ + PH    R + LG++  MG
Sbjct: 332 GGSATVIDDYAHHPVEIRAVLSAARESVDAMDTPARVIAVMQPH----RFSRLGEL--MG 385

Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQS 439
           +    F+  D   V  +Y      + G    AL D +    H H     D   L   +  
Sbjct: 386 DFQACFNEADQVYVAPVYAAGEDPVEGVDAAALVDGIKSLGHRHAQTIADREELVRALAP 445

Query: 440 SLVDGDVVV 448
            L  GD+V+
Sbjct: 446 QLEPGDLVL 454


>gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
 gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
          Length = 474

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           P   V GI+ DSR + P   F AI+G      P  +GHDFI  A+ +GA  +V   D+  
Sbjct: 13  PTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVGTQDL-- 70

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVA 101
               L +P   V D   AL  LA A
Sbjct: 71  ---ELPVPYLKVADPRSALADLAAA 92


>gi|213585604|ref|ZP_03367430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 320

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 25  AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 77

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++   EK     
Sbjct: 78  VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 132

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 133 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 183

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 184 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 236

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 237 WINDSKATNVGSTEAALNGL 256


>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 489

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 34/339 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  DSR I     F A++G   DGH FI  A++KGA L++V+ ++    G   + +  +
Sbjct: 33  GMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIGYVLIKNL 92

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              LG L         +    I+ +TG+ GKTTT  +L   L   K   A  G+    IG
Sbjct: 93  RKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIEYKIG 149

Query: 149 VPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFLTHLVRPHIAVIT 190
             +  A    P  +D        +E G+ +           LG +  L        A+ T
Sbjct: 150 KEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEF----DGAIFT 205

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E+   AK ++F  L       LN DD + + L+ + H +      S+
Sbjct: 206 NLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGKRLQEEFHGI------SY 259

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +K A  Q +       +  +E+ L GK  E     +G     N+L ++ +V  L    
Sbjct: 260 G-TKQAGVQGKILGFEGGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKELGMSE 318

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           +     + +     GR +   C   Q +  +ID ++  +
Sbjct: 319 EEIFAKVELLQGAPGRFETVDCG--QDYMVVIDYAHTGD 355


>gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 485

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 131/327 (40%), Gaps = 52/327 (15%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+   L IPV    D+LG          L   +T + I G+ GKT+T  M  +A+
Sbjct: 88  NPELVAA-RELGIPVIRRSDLLG---------ELMEGSTQVLIAGTHGKTSTTSMAVVAM 137

Query: 131 SS--IKKTYACIGSYNN-----HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +  +  ++A  G  N      H G            D  + E   S    +R+     +
Sbjct: 138 QAAGMDPSFAIGGQLNKAGTNAHQGTG----------DAFVAEADESDASLLRY-----K 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKS 239
           P+IAVIT I P HL  F   E    A  E+FE     L    ++ +  DD    +L  K 
Sbjct: 183 PNIAVITNIEPDHLDFFKSEE----AYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKI 238

Query: 240 H-------ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           H        +G  T+ +  +  + A   +  ++     +   + + G+  EVV    G H
Sbjct: 239 HEKHKDIKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRH 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNAN 349
           M  N    L    I   D+      +S F     R + Y   + +G F  I+  + Y  +
Sbjct: 299 MVLNAAAALTAGVIAGGDLFKLAAGISDFSGVRRRFE-YHGVVAEGDFAGIELYDDYAHH 357

Query: 350 PASMKAAISVL-SQISPHGEGRRIAVL 375
           P  + A ++   +++   G+GR + + 
Sbjct: 358 PTEVSAVLTAARAKLQARGQGRLLVIF 384


>gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
 gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
          Length = 471

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 19/259 (7%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARM 156
           A+AA +  +A + A+ G+ GKTTT  ML +AL++  +  +YA  G               
Sbjct: 110 ALAALMAGRAGV-AVAGTHGKTTTSSMLAVALTAAGLDPSYAIGGELTGGDDGGARDGSG 168

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           P      + E   S  G  R       P + V+T + P HL ++   E  A+A  E  + 
Sbjct: 169 PF-----VAEADESD-GSFRAYA----PVVDVVTNVEPDHLDHYGTAEAFAAAFEEFVDR 218

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L+  G +    DD     L   +   G++ + ++G S  AD +LR  +  +  S + V  
Sbjct: 219 LQPGGLLVACADDPGSAALAGHARGRGVR-VRTYGASATADVRLRDLQPGAAASAVLVD- 276

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G   E+     G H   N          L AD    ++ L+ F    G  +R+      
Sbjct: 277 GGVPRELRLAVPGEHNVLNAAAAYCAAVELGADPVAVLEGLARFG---GARRRFELKGEA 333

Query: 337 GFFTLIDESYNANPASMKA 355
               ++D+ Y  +P  ++A
Sbjct: 334 AGVRVVDD-YAHHPTEVEA 351


>gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
 gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
          Length = 472

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFEL 167
           +A+ G+ GKTTT  M+T+ L  +      +      IG  L    +  D    D  + E 
Sbjct: 118 VAVAGTHGKTTTTSMITVVLQHLGAMPGYV------IGGQLVTTGLGADAGADDIIVVEA 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   +  FL  ++ P +AVIT +   HL N+  +EEI    A     + +  T+ +  
Sbjct: 172 DES---DGSFL--MLSPRVAVITNVEADHLDNYGDLEEIHDKFAAFIGRVSE--TVVVGV 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           DD     +   +   G+K + ++G++  AD+++R
Sbjct: 225 DDPGARRVAEVARQRGLK-VLTYGEADTADYRVR 257


>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 466

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +       I K Y   G    H+G  +  A +P+  +    ++ +
Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-RVHLGGNIGAALLPMLPEVSPDDVAV 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + ++    P+IAV+T + P HL +   ++E   AK  I    ++     L Y++
Sbjct: 173 VELSSFQLISMHQSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232

Query: 230 S 230
            
Sbjct: 233 E 233


>gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
 gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
          Length = 489

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 26/321 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR + P   F A KG   DG  F   A   GA  ++   D  A + +L     
Sbjct: 21  ITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAAGAIAILCAEDAAAEVRALVPETV 80

Query: 87  GVDDVLGALNKLAVAARLRSK------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V+ A+    V A++ ++       TI+A+TG+ GKT+          +     A +
Sbjct: 81  A---VVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHFARQIFQAAGHPAASL 137

Query: 141 GSY-------NNHIGV----PLTLARMPVDV-DFGI--FELGMSHLGEIRFLTHLVRPHI 186
           G+         ++ G+    P+ L +   ++ D G+    L  S  G  ++    VR   
Sbjct: 138 GTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASSHGLDQYRLDGVRLTA 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T +   H+     IE   +AK  +F E L   GT+ L+  + + + + A +   G+ 
Sbjct: 198 AAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEKYADRVMAVAQERGLP 257

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +++ G++   +  L   +       + +Q      +V    IG     N L+  G+   
Sbjct: 258 -VFTVGETGR-NLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQVSNALIAAGLAIS 315

Query: 306 LTADVDTAIKALSVFHPKEGR 326
              D  TA++AL       GR
Sbjct: 316 AGIDTGTALRALENLKGAPGR 336


>gi|87122626|ref|ZP_01078503.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
 gi|86162084|gb|EAQ63372.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
          Length = 478

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 152/390 (38%), Gaps = 46/390 (11%)

Query: 93  GALNKLAVAARLRSKATI------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G  N++ +  R    A +      IA+ G+ GKTTT  ++   L++       +      
Sbjct: 95  GKENRIPIVRRAEMLAELMRYRHGIAVAGTHGKTTTTSLMASVLAATGDAPTFV------ 148

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEE 205
           IG  LT A     +    + +  +   +  FL HL +PH A++T I   H+  + G  E+
Sbjct: 149 IGGRLTSAGTNAQLGSSKYLVAEADESDASFL-HL-QPHSAIVTNIDEDHMDTYGGDFEK 206

Query: 206 IASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +     E    L   G   L  DD +  E+L   S     + I ++G    ADF      
Sbjct: 207 VKHTFVEFLHNLPFYGMAVLCVDDENVREILPQVS-----RPILTYGIEHEADFYATDLV 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV---FH 321
           Q     + E      ++E +   +      N+L  L  +++ T   D  ++A+++     
Sbjct: 262 QTGR--YCEFVAHRPNLEPIRIRLPMPGKHNVLNALATIAVAT---DLGVEAVAIQAGLM 316

Query: 322 PKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             EG G+R++     AL +    +  + Y  +P  ++  I  +    P      I     
Sbjct: 317 GFEGVGRRFQEQSPLALPKSGEVMFIDDYGHHPREVEVTIDAIRDGWPDKRLVMIYQPHR 376

Query: 378 MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYS 427
                +L + F      +D+  +L +Y      ++G    AL  ++ +      IHV   
Sbjct: 377 FSRTRDLYEDFVKVLSKVDVLLLLDVYAAGEAPVNGADSRALCASIRQRGAVDPIHVGKD 436

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           E +  +   +   L DGD+++ + +   G 
Sbjct: 437 EDLSSILANV---LRDGDLMITQGAGDIGL 463


>gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
 gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
          Length = 438

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIAITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  I+E  +   T  
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG     D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGADD-----RCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +         +++KAL+ F    G   R++  L+     
Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 26/263 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++    A + +  T+  IG   N  G    + +     DF I E  
Sbjct: 121 IAIAGTHGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL HL +P ++VIT I   H+  + G +E++     +    L   G   +  
Sbjct: 176 ES---DASFL-HL-QPMVSVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCI 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           D      L  +    G + + ++G+S +AD+++  + Q +      V   QG+S+    +
Sbjct: 231 DSEVASELIPR---FG-RPVITYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLN 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H A N    + +           ++AL  F   EG G+R++        +G   L+
Sbjct: 287 MPGKHNALNATAAIAVAKDQNIANFAILEALQKF---EGIGRRFQHYGEFENERGSVMLV 343

Query: 343 DESYNANPASMKAAISVLSQISP 365
           D+ Y  +P+ + A I+   +  P
Sbjct: 344 DD-YGHHPSEVAATITAAREGWP 365


>gi|556014|gb|AAB40043.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 348

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 38/269 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K T +A+TG+ GKT+T  +L   + + K T   IG             +   + ++ +F
Sbjct: 15  KKFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGD---------GTGQGNENSEYFVF 65

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++  +P  A++T I   H   FS I+++  A  E+   L+    I
Sbjct: 66  E-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEM--ALQVNKGI 116

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD        K HA  +  +Y +G  +  DFQ R   + +E +  +V ++    + 
Sbjct: 117 IACGDDEHL----PKIHA-NVPVVY-YGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDT 170

Query: 284 VH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI--KALSVFHPKEGRGKRYRCALNQGFF 339
            +    G+H   N+L +L ++++    ++D++I   AL  F    G  KR       G  
Sbjct: 171 FYIPAYGHH---NVLNSLAVIALCHYEEIDSSIIKHALKSF----GGVKRRFNEKQLGDQ 223

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGE 368
            LID+ Y  +P  +K  I    Q  P  E
Sbjct: 224 VLIDD-YAHHPTEIKVTIEAARQKYPDRE 251


>gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
 gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
          Length = 438

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIAITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  I+E  +   T  
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG     D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGADD-----RCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +         +++KAL+ F    G   R++  L+     
Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|332295509|ref|YP_004437432.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
 gi|332178612|gb|AEE14301.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
          Length = 478

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 52/354 (14%)

Query: 57  ILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +L   QKG  + +      ++ D+ A + S +IP    + +      + V +R +  + I
Sbjct: 46  LLKLKQKGVNIYIGHSPDNISKDVDAVVYSGAIPSDNCELLSARQRNIPVLSRAQMLSKI 105

Query: 111 I------AITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           I      A+ G+ GKTTT  M++  L+   +  ++   G  N++ G        P    +
Sbjct: 106 IEQKFSIAVAGTHGKTTTTSMISKMLNDGGLDPSFLIGGELNDY-GANARHGSGP----Y 160

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S   +  FL +  +P+IAVIT I   H S FS ++ +     +  +G+ + G 
Sbjct: 161 IVIEADES---DGSFLNY--KPNIAVITNIDFDHPSFFSDLKMVEDYFEKFMQGISEDGK 215

Query: 223 IFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + +  D     S  E +  K      K  Y FG   N   Q +        S+ ++ ++G
Sbjct: 216 LVVCGDHAVTRSVAERITDKE-----KIFYGFG--DNNQVQCKNVILSGFGSYYDLYIEG 268

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           + + E+  +  G H   N L    +  I+  D  +A  +++ F      G R R  L   
Sbjct: 269 EKIGEITLNVPGIHNVLNSLAAFSVAKIIGLDFVSAFDSIASFS-----GVRRRFELKCK 323

Query: 338 FFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEM 381
              +ID+ Y  +P  + A ++    I           PH   R    L + C++
Sbjct: 324 DPYIIDD-YAHHPEEINAVLNTARSIFKDKNLVLIFQPHRFSRTEKFLNNFCDI 376


>gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
           oxydans 621H]
 gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter
           oxydans 621H]
          Length = 476

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           SKA  IA+TG+ GK+TT  ++    ++  +  A  G+        L L  +P   D G++
Sbjct: 138 SKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT---ASLALPLLP---DDGVY 191

Query: 166 ELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            + MS       L  L R H   A +  + P HL     +   A+AKA +F+ +      
Sbjct: 192 VIEMSSY----MLERLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDNMGPDDLA 247

Query: 224 FLNYDDSFFELLKAKSHALGIKTI 247
            +  DD +   + ++  + G++ +
Sbjct: 248 VIGMDDDWCRAIASQVASRGVQVV 271


>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
 gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
          Length = 272

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 38/217 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 37  ITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDI-----NIEI 91

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A+  +A        +K  +I ITG+ GKTTT  ++   LS        +G
Sbjct: 92  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLIEKILSDYGYHMGLMG 151

Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP- 184
           +    +G            P TL R        + D+ + E+    L       H+ R  
Sbjct: 152 NNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL-------HMERVK 204

Query: 185 ----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                IAV T +   HL      +E    K+ +F  L
Sbjct: 205 GCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 241


>gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
 gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
          Length = 465

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 133/307 (43%), Gaps = 29/307 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD 159
           A +R    I+AI G+ GKTTT  +    L +I  + ++A +G+    +G    L      
Sbjct: 107 ATMRGHEKIVAIAGTHGKTTTTSLTAHMLKTIGTRPSFA-VGANIPSLGTNAELGS---- 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              G + +  +   +  FL +  RP + ++T +   HL ++   + +  A  +  + L +
Sbjct: 162 ---GSYFVAEADESDASFLNY--RPDVIIVTNVEADHLDHYGTADAVHQAFVDFAQLLPE 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277
            G +    DD     L  K  A      + ++G S +AD +L +  Q +E       ++ 
Sbjct: 217 DGLLICCADDEGANNLARKMRAARSDIRVQTYGFSDHADRRLSQ-AQATEDGRFTATIEW 275

Query: 278 --GKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             G+S  +++   G    +     + +GI + L  +V  A+ ALS F    G  +R+   
Sbjct: 276 GSGESRILDLAVPGQHNLLNAAAALAVGIDAGL--EVQEALDALSSF---SGAARRFEFK 330

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   + D+ Y  +P  ++AA++    ++  G GR   V      +   +Q F+   A
Sbjct: 331 GEAGAVRVYDD-YAHHPTEVQAALTAGRTVA--GNGRLHVVF--QPHLFSRTQEFYRQFA 385

Query: 394 EVLSLYN 400
           + LSL +
Sbjct: 386 QALSLAD 392


>gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 138/352 (39%), Gaps = 39/352 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G  GKTTT  M+   L+   +  T   +G   N +G    L           + + 
Sbjct: 109 IAIAGMHGKTTTTSMVASVLAGGGLDPT-VVVGGRVNALGSNARLGN-------SRYLVA 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL   + P +AV+T +   H+  +  + ++ +A  E  + +   G      D
Sbjct: 161 EADESDRSFLK--LSPILAVVTNLDREHMDAYRDMADVETAFVEFMDRVPFYGATTACID 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVH-H 286
           D     +  +      + + ++G+S +ADFQLR   + S+  +  EV  +G  +     H
Sbjct: 219 DPMLRAILPRVR----RRVMTYGESPDADFQLRMLPKDSDCHAVFEVNTKGLLLGPFRLH 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N    + I   L        + L  F    G  +R++        T++D+ Y
Sbjct: 275 VPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFR---GVDRRFQVKGVVRGVTVVDD-Y 330

Query: 347 NANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVL 396
             +P  ++A +          VL    PH   R   +      M E + +F   DL EV+
Sbjct: 331 GHHPTEVRATLQAARECGYGRVLVLFQPHRYSRTAEL------MEEFATAFGDADLVEVV 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +Y  +   + G    AL   + +     Y+ + +     + S   DGDV++
Sbjct: 385 DIYAANEEPIVGVTAEALVAQM-QGTRAEYAGSFEEAVGRLVSEARDGDVIL 435


>gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
 gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 149/367 (40%), Gaps = 51/367 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T IA+ G+ GKTTT  ML+  L          G  +  I V   L  +  ++  G
Sbjct: 107 MRNYDTSIAVAGTHGKTTTTSMLSHILLK--------GECDPTISVGGILPAIGGNIRVG 158

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  ++   E    FL+    P I +I  I   HL  F  I++I  +     E L   G
Sbjct: 159 QSETFLTEACEYTNSFLSFF--PTIGIILNIDADHLDFFKDIDDIRHSFRTFAELLPAEG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N D   +E++   +  L  K I ++G   +A++        ++ ++ E  L   + 
Sbjct: 217 ALIINADTPKYEMI---TENLPCKVI-TYGLEHDAEY------TATDITYDE--LGHATF 264

Query: 282 EVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V+H+G           G H   N L ++    +L    +     L  F    G  +R++
Sbjct: 265 HVLHNGEDLGTCSLKVPGIHNVSNALASIAAGQLLDLSTEVIFDGLKDFG---GTDRRFQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMG 382
                G  T+ID+ Y  +P  ++A +          +     PH   R  A+L +  +  
Sbjct: 322 YKGKIGDVTIIDD-YAHHPTEIEATLHAAKNYPHKKIWCVFQPHTYTRTKALLPEFAKA- 379

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            L+ + H+ LA++ +     ++ +S  ++   +  +       Y  T D +  F+  +  
Sbjct: 380 -LTLADHVVLADIYAARETDNLGISSRNL--QEKIVELGTPCEYFPTFDEIENFLLENCT 436

Query: 443 DGDVVVV 449
            GD+++ 
Sbjct: 437 QGDLLIT 443


>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
 gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
          Length = 437

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 157/401 (39%), Gaps = 74/401 (18%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           ++ +DM+     L++    +  VL A    +  + +  R  +K  I+ ITGS GK+T   
Sbjct: 63  LLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKP-IVGITGSNGKST--- 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           + T+     K     +G   N IG+P  L+ +  D +  + EL    L      T+ ++ 
Sbjct: 119 VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSSFQLET----TYSLKA 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A I  +   H+  +  +E+   AK  I+    K G   LN +D               
Sbjct: 173 AAATILNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNEDRL------------- 216

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----------GYHMAQ 294
               +FG+++N       + + S   W++ +  GK   +V   +          G H   
Sbjct: 217 ----TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVILPCEEATLVGRHNYM 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L    +   +  ++D+   AL  F   +G   R++          I++S   N  S  
Sbjct: 272 NILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWINDSKATNVGSTV 328

Query: 355 AAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AA++ L     + EG+   +LG      D  E+ EL    HI    +   +      L+ 
Sbjct: 329 AALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI----ICYCFGRDGALLAK 379

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 380 F-----------SSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 31/279 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDV 160
           +R+   +IAI G+ GKTTT  M+   L   K  Y     +G++   +G    +       
Sbjct: 98  MRNFKNVIAIAGTHGKTTTTSMIGYILK--KANYNPTILVGAFVKQLGGNFVIGSK---- 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E        ++F     +P I VI  I   HL  F  I+ I  +  +    +  +
Sbjct: 152 DYLVVEACEYVDSFLKF-----KPTIGVILNIDNDHLDYFKDIDSIKESFRKFAMKIPSS 206

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G I  N DD   + + +K H      +      + AD             + E  ++ K+
Sbjct: 207 GFIVANCDDKNVKDVISKLHT----QVVCISTKEKADIFADNISY--NDGYYEFDVKNKN 260

Query: 281 MEVVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            E++ H      G+H   N L    + S L  +  T  + LS F    G  +R       
Sbjct: 261 NEILAHIKLNIPGFHNVYNALAAFAVASKLRIESFTIEQTLSEFC---GASRRLEKVGEF 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
               L D+ Y  +P  +KA ++ L +IS   EG+ +A+ 
Sbjct: 318 NGIYLYDD-YAHHPTEIKATLATLKKIS---EGKVLAIF 352


>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L  I++     +P +  I  I P HL+    +E    AK  IFE +++TG  
Sbjct: 163 VLEISSFQLETIKYF----KPMVGCILNITPDHLNRHMTMENYIKAKMRIFENIDETGYT 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSM 281
            LNYD+S    L      L    +  F K+KN      ++K     E++ +    +GK+ 
Sbjct: 219 VLNYDNSVTRDL----IGLAKGNVIVFSKNKN------QFKNVVFIEENKIYFTFEGKTQ 268

Query: 282 EVVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           EV+        G H  +N L  +          DT    L  F   E R
Sbjct: 269 EVMRKDEIFIPGEHNLENALAAIACTLPFGVTKDTIEYVLKNFKGVEHR 317


>gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN]
 gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae
           Br4923]
 gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae]
 gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923]
          Length = 495

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 113/302 (37%), Gaps = 43/302 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH 146
           L + AV ARL    T + + G+ GKTTT  ML +AL          +    A +G+ N H
Sbjct: 102 LLRSAVLARLMDGCTTLMVAGTHGKTTTTSMLVVALQHCGCDPSFVVGGELAVVGT-NAH 160

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            G+         + D  + E                 P++AV+T I   HL  +  ++  
Sbjct: 161 HGLGACFVAEADESDGSLLEY---------------TPNVAVVTNIDSDHLDFYGSVDAY 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF---QLRKW 263
                   E     G + +  DD     L  ++  LGI+ +      +  +    +L  W
Sbjct: 206 IRVFDSFVERFALGGALVVCNDDPGAAALARRTAELGIRVLRYGSDDRIGETLAARLLSW 265

Query: 264 KQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +Q    +   +QL G+    V      G HMA N L  L     + A  D  +  L+ F 
Sbjct: 266 EQQGTGAVAHIQLAGQPNSRVMRLPVPGRHMALNALGALLAAIEIGASTDEVLDGLAGF- 324

Query: 322 PKEGRGKRYR------CALNQGFFTLID--ESYNANPASMKAAISVLS-QISPHGEGRRI 372
               RG R R        + Q   +L+   + Y  +P  + A ++     +   G GR I
Sbjct: 325 ----RGVRRRFELVGTSGVGQASNSLVRVFDDYAHHPTEISATLAAFRIMLEQSGGGRCI 380

Query: 373 AV 374
            V
Sbjct: 381 VV 382


>gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 445

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A+R  ++A IIA+TGS GKTTT  +L   L     +    G+  N      + A
Sbjct: 89  ISEIEFASRY-TQAKIIAVTGSNGKTTTTSLLYHLLEQAGLSIGVGGNIGN------SFA 141

Query: 155 RMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKA 211
           RM      ++ + E+    L +I       RPHIA++  I P HL  ++   +    AK 
Sbjct: 142 RMVAQEPKEYYVLEISSFQLDDISSF----RPHIALLLNITPDHLDRYNYQFQNYIDAKF 197

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKS 253
            I E   +   +  + DD   +   AK   +  + I +S  KS
Sbjct: 198 RITEFQSQADFLIYDADDPVLQEELAKRKDIKAQCIPFSLEKS 240


>gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
 gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
          Length = 467

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + +++  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQVIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR I   + F AI+G   +GH+FI  A+  GA  +V +T +  ++ S  I   
Sbjct: 23  VHNIHFDSRKIQSNDVFVAIRGSVSNGHEFIDKAIALGAKAIVCDT-LPTNLLS-QITYV 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            V D   AL  LA         K  ++ +TG+ GKTT   +L
Sbjct: 81  KVKDTNAALAYLATNFYDNPSQKLQLVGVTGTNGKTTIASLL 122


>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Paris]
 gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Paris]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 177/436 (40%), Gaps = 51/436 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88
           +  D+R  AP  A F  + P     D  ++  Q    ++   TD++ S G +L  PV   
Sbjct: 30  VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLER 84

Query: 89  DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
               GA     +   AR  S A +IAITG+ GK+T    +T  +  + K      +   +
Sbjct: 85  ARQAGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG P L +       D  + EL    L     LT+ + P +A I  + P HL     +E 
Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AK  I+ G +    +  N +D +   +  +S    IK I SFGK   +   +  W  
Sbjct: 196 YTQAKQRIYRGAK---AVLFNREDVY--TVPHQSCQTDIKCI-SFGKDAPS---MGNWGL 246

Query: 266 CSEQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +++       ME  L  +S+ +     G H   N L    +       +   +  L  
Sbjct: 247 IEQENTTYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKT 302

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R +  R     G+   I++S   N   + A IS ++ I    +G+ + + G   
Sbjct: 303 FPGLPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +  +  +     LA+ +S + +  + L G     ++ AL + + V  + +++G     ++
Sbjct: 357 KGADFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410

Query: 440 SLVDGDVVVVKSSNSC 455
               GDVV++  S +C
Sbjct: 411 CAKPGDVVLL--SPAC 424


>gi|62900456|sp|Q5FUJ7|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           SKA  IA+TG+ GK+TT  ++    ++  +  A  G+        L L  +P   D G++
Sbjct: 110 SKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT---ASLALPLLP---DDGVY 163

Query: 166 ELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            + MS       L  L R H   A +  + P HL     +   A+AKA +F+ +      
Sbjct: 164 VIEMSSY----MLERLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDNMGPDDLA 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTI 247
            +  DD +   + ++  + G++ +
Sbjct: 220 VIGMDDDWCRAIASQVASRGVQVV 243


>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 130b]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 176/433 (40%), Gaps = 51/433 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           D+R  AP  A F  + P     D  ++  Q    ++   TD++ S G +L  PV      
Sbjct: 33  DTRKEAPGVAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLERARQ 87

Query: 92  LGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            GA     +   AR  S A +IAITG+ GK+T    +T  +  + K      +   +IG 
Sbjct: 88  AGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGNIGT 142

Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P L +       D  + EL    L     LT+ + P +A I  + P HL     +E    
Sbjct: 143 PVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQ 198

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK  I+ G +    +  N +D +   +  +S    IK I SFGK   +   +  W    +
Sbjct: 199 AKQRIYRGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGKDAPS---MGNWGLIEQ 249

Query: 269 QSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           ++       ME  L  +S+ +     G H   N L    +       +   +  L  F  
Sbjct: 250 ENTIYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKTFPG 305

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +  R     G+   I++S   N   + A IS ++ I    +G+ + + G   +  
Sbjct: 306 LPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQGKGA 359

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +  +     LA+ +S + +  + L G     ++ AL + + V  + +++G     ++   
Sbjct: 360 DFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAK 413

Query: 443 DGDVVVVKSSNSC 455
            GDVV++  S +C
Sbjct: 414 PGDVVLL--SPAC 424


>gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 147/358 (41%), Gaps = 55/358 (15%)

Query: 96  NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY 143
           N++ V  R       +R K+T+ A+ G+ GKTTT  M+   L +  I  T      I SY
Sbjct: 90  NRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINSY 148

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            ++       AR+  D D+ + E   S    +R    L     A++T I P HL ++   
Sbjct: 149 GSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AIVTNIDPEHLDHYGSF 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++  A  E    +   G  FL  D    + +  +   +  + + ++G S  AD +    
Sbjct: 196 EKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSILPR---IRDRRLITYGFSAQADIRAVDI 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIK-A 316
              S  +     ++G+  ++     I     G H  QN L  +G V++  +  D AI+  
Sbjct: 253 TPISGGNRFTAVIRGRDGDIRRIENIFLPMPGRHNIQNALSAIG-VALEFSIPDAAIRDG 311

Query: 317 LSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPH 366
            + F   + R  R     +  G   +ID+ Y  +P  +KA +S         V++ + PH
Sbjct: 312 FARFGGVKRRFSRVGEIKICDGSVLVIDD-YGHHPVEIKAVLSAARESAQQRVIAVVQPH 370

Query: 367 GEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               R   L D+  M E   +F+  D+  V  +Y      ++G    AL   L +  H
Sbjct: 371 ----RFLRLHDL--MTEFQSAFNDADMVFVAPVYAAGEQPIAGVDSQALVSGLKQHGH 422


>gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 444

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 9/118 (7%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFEL 167
           +II +TG+ GKTT   ++T  L++       +G+    +G PLT   + +D  +  + EL
Sbjct: 112 SIIGVTGTNGKTTVTLLITHILNANGLKAKALGN----VGTPLTREILTLDFQEIAVLEL 167

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               L    F   ++    AV+  I P HL  +  +E  A +K +I + L+K+G +F+
Sbjct: 168 SSYQLD--TFQQQVLDE--AVVLNITPDHLERYETMENYAKSKFQIGKCLKKSGKLFV 221


>gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
 gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
          Length = 480

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 26/258 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +L    A   +  T+  IG   N  G    L           F + 
Sbjct: 121 IAVAGTHGKTTTTSLLASVFAAGGLDPTF-VIGGRLNAAGTNAQLGS-------SRFLIA 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++V+T I   H+S + G   ++     E    L   G   L  
Sbjct: 173 EADESDASFL-HL-QPMVSVVTNIDADHMSTYGGDFNKLKKTFIEFLHNLPFYGLAVLCV 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     L  +   +G  T+ ++G S++AD +    +Q   +++  V +   + ++V  +
Sbjct: 231 DDPVVRELLPQ---VGRPTV-TYGFSEDADVRAINVRQEGMRTYFTVLRPDCEPLDVSVN 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T  I +    D    +  LS F   +G G+R++      ++ G   L+
Sbjct: 287 MPGNHNVLNALATTAIATDEGIDDAAIVSGLSGF---QGVGRRFQVYGELPVDGGSVMLV 343

Query: 343 DESYNANPASMKAAISVL 360
           D+ Y  +P  + A I  +
Sbjct: 344 DD-YGHHPREVAAVIKAV 360


>gi|255098863|gb|ACU00771.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium massiliense]
          Length = 188

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP++ ++T I   HL +F   E  ++   E  E L   G + +  DD     L  ++H  
Sbjct: 8   RPNLIIVTNIEADHLDHFGSAEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHER 67

Query: 243 GIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKS 280
           GI+ +  +G +  A+        QLR W+     +  ++QL G+S
Sbjct: 68  GIR-VRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGES 111


>gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S+A  +++TGS GKTTT  ++ + L+  +       + N  IG+PL+ +A+     D  +
Sbjct: 110 SEADWVSVTGSNGKTTTTTLIALMLNYQRAQGHAYAAGN--IGIPLSEVAQKATAKDTMV 167

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  V+P +AV+T I  AHL      E    AK  I +    +    
Sbjct: 168 TELSSFQL----MGTTTVKPKVAVLTNIYEAHLDYHGTRENYVQAKMRIVQNQTASDYFV 223

Query: 225 LNYDDSFFELLKAKSHA 241
           +N+D      L  ++ A
Sbjct: 224 VNWDLPELRTLSQQTKA 240


>gi|326797499|ref|YP_004315318.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326548263|gb|ADZ76648.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 41/333 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129
           + D+VA    L   ++   ++LG         ++      IA+ G+ GKTTT  M+  I 
Sbjct: 88  DLDLVAFFQRLGYRLYKRSEILG---------KISESHFTIAVAGTHGKTTTSSMIAHIL 138

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            SS +   A +G    +    L LA    D D  + E   +   +  FLT  + P+IAV+
Sbjct: 139 TSSGRPCSAFLGGIAANYNTNLLLA----DSDLFVVE---ADEFDRSFLT--LHPNIAVV 189

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T   P HL  +   E +  +       + K G   +                L + T   
Sbjct: 190 TATDPDHLDIYGDSEHMLESFRLFVNQVAKDGKRIIK-------------EGLHLPTDIR 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTA 308
           +   K AD      +  ++  + +     KS+  +  GI G H  +N +  + +  +L  
Sbjct: 237 YAVEKRADVYATNIQIRNKCFYFDYLGYNKSIFDIKLGIAGKHNIENAVAAITVAKLLGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D +    +L+ F   +G  +R+   +N+     +D+ Y  +P  ++A +S + ++  +G+
Sbjct: 297 DDEAISGSLASF---KGVKRRFEYIVNREDQVYVDD-YAHHPEELRACLSAMKEL--YGD 350

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                V      +   ++ F  + AEVL L ++
Sbjct: 351 KEITCVF--QPHLFTRTRDFVDEFAEVLGLADV 381


>gi|323144085|ref|ZP_08078727.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
 gi|322416139|gb|EFY06831.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
          Length = 479

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 42/334 (12%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           FI H  +  +GA +VVV       N ++ A+I    IPV    ++LG L +         
Sbjct: 69  FIGHRAENIEGASVVVVSSAIHQGNPEVNAAI-EKRIPVVRRAEMLGELMRYRYG----- 122

Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  +++   A + +  T+  IG   N  G   T AR+        
Sbjct: 123 ----IAVAGTHGKTTTTSLISSIFAEAGLDPTF-VIGGLLNSAG---TNARL----GSSR 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL HL +P + V+T I   HL  + G   ++     E    L   G  
Sbjct: 171 YLIAEADESDASFL-HL-QPMMTVVTNIEADHLETYGGDFSKLEDTFIEFLHNLPFYGVA 228

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
            +  DD     L  +   +G + + ++G  + +D Q+  ++Q    S   V  +  S ++
Sbjct: 229 VVCNDDPVIRKLMPR---IG-RAVVTYGTIEGSDLQVVDYEQKEAGSTFTVLRKNASPLK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           +  +  G HMA+N    + +      D D+  +AL  F     R +RY +    QG  +L
Sbjct: 285 IELNLPGIHMAKNAAAAIAVAMEEGIDDDSIKRALKNFAGVGRRFQRYGKLMSPQGIVSL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +D+ Y  +P+ ++A I  + +  P+   RR+ ++
Sbjct: 345 VDD-YGHHPSEVQATIDAVRRGWPN---RRLVMV 374


>gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           IAITG+ GKTTT  +L   L  + K  + I      +G  +  A   + V+ G  +L + 
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 RYNVQN 281


>gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
 gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
          Length = 496

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 28/252 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLSIPV 85
           +  DSR ++ +  F A+ G   +G D++    +KG    VV T     ++AS  S  + +
Sbjct: 27  VKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVVPTYVAKGLIAS-NSTDLNI 85

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143
            G DDV   L+ +         + +I +TG+ GK++    +     ++  + A IG++  
Sbjct: 86  IGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFGV 145

Query: 144 ---NNH----------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
              NN           + +  TLA+   D VD   FE     L + R     +    AV 
Sbjct: 146 GKLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAG--IEIDTAVF 203

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E  A+AK ++F        +F +  D +   +   S   G K+ Y 
Sbjct: 204 TNLTQDHLDYHGTMESYATAKRKLFRLDTLKHAVFCSKSD-YCNFMAEDSK--GDKSYY- 259

Query: 250 FGKSKNADFQLR 261
            G+  + DF +R
Sbjct: 260 -GERPSDDFVIR 270


>gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
 gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
          Length = 501

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMAEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LLK  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLKETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 265 PTI-TYGRSEESNYQV 279


>gi|92113241|ref|YP_573169.1| cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
 gi|91796331|gb|ABE58470.1| Cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 879

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSY--NNHI---------GVPLTL 153
           +  I+A+TG+ GKTTT  +++  L    ++   AC G+   +NH+              +
Sbjct: 481 RIPIVAVTGTNGKTTTVRLISHLLRQAGRSVGMACTGAIEIDNHVILRGDYSGPQAASIV 540

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
            R P  V++ + E+     G +R        H+ V+  IA  HL  S+   ++E+A  K+
Sbjct: 541 LREPT-VEYAVLEVARG--GIMRRGLGFDECHVGVLLNIASDHLGESDIHTLDELARCKS 597

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            + + + K+GT  LN DD    +L ++  A G
Sbjct: 598 VVIDAVGKSGTAVLNADDP--RVLASREWARG 627


>gi|51246782|ref|YP_066666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Desulfotalea psychrophila LSv54]
 gi|50877819|emb|CAG37659.1| probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Desulfotalea psychrophila LSv54]
          Length = 478

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 154/383 (40%), Gaps = 43/383 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG-----SYNNHIGVPLTLARM 156
           +RS+++++ ITG+ GKTTT  +L   L  + +  T+   G     + N  +G        
Sbjct: 114 IRSRSSLV-ITGTHGKTTTCSLLASVLYHAKLDPTFMIGGIVREFNSNFRLGKGKYFVAE 172

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + D   F+       E +FL +  RP IAVIT++   H   F+ +E+I  A A+  + 
Sbjct: 173 GDEYDTAFFD------KESKFLHY--RPQIAVITSLEFDHADIFADLEQIKRAFAKFIQL 224

Query: 217 LEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           L   G +  N D+    EL +A         +  +G + +  + L K    S  +  EV 
Sbjct: 225 LPPDGLLIANLDNPDIAELAQAAPCP-----VEGYGLNSSFPWSLGKISSQSGYTHFEVL 279

Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G   +     + G H   N L    I+  L  D  T  + L  F    G  +R     
Sbjct: 280 KDGTLWDSFTVALPGQHNCLNSLAVCAIMHHLGLDTKTINQGLVAF---GGVKRRQEIRG 336

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQS 387
            +   T+ID+ +  +P +++  ++ L    P  + R + V               + S+S
Sbjct: 337 IENNITVIDD-FAHHPTAVRETLAALKAAYP--QNRLVTVFEPRTNSSRRTIFQKQYSES 393

Query: 388 FH----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           F     + L E + L +     L     L   D   R +        D + L ++S L  
Sbjct: 394 FDSSNIVLLREPVPLVDYPADQLFSSKQLTC-DLKKRGLKAASFANTDQILLHLKSLLQP 452

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GDVV + S+   GF  +   LLE
Sbjct: 453 GDVVAILSNG--GFDNIHVRLLE 473


>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 177/436 (40%), Gaps = 51/436 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88
           +  D+R  AP  A F  + P     D  ++  Q    ++   TD++ S G +L  PV   
Sbjct: 30  VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLER 84

Query: 89  DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
               GA     +   AR  S A +IAITG+ GK+T    +T  +  + K      +   +
Sbjct: 85  ARQAGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG P L +       D  + EL    L     LT+ + P +A I  + P HL     +E 
Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AK  I+ G +    +  N +D +   +  +S    IK I SFGK   +   +  W  
Sbjct: 196 YTQAKQRIYRGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGKDAPS---MGNWGL 246

Query: 266 CSEQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +++       ME  L  +S+ +     G H   N L    +       +   +  L  
Sbjct: 247 IEQENTTYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKT 302

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R +  R     G+   I++S   N   + A IS ++ I    +G+ + + G   
Sbjct: 303 FPGLPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +  +  +     LA+ +S + +  + L G     ++ AL + + V  + +++G     ++
Sbjct: 357 KGADFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410

Query: 440 SLVDGDVVVVKSSNSC 455
               GDVV++  S +C
Sbjct: 411 CAKPGDVVLL--SPAC 424


>gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
 gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
          Length = 509

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 48  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 160 TLDGKTYFKSHLTTPESLDLYRMMAEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LLK  +    I
Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLKETADLFQI 272

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 273 PTI-TYGRSEESNYQV 287


>gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
 gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
          Length = 477

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 33/274 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A + +  T+  IG   N  G    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGANARLGQ-------GEFIVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P ++V+T I   H+  +      +  A  +    +   GT  L  
Sbjct: 160 EADESDASFLNLL--PVLSVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCT 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEV 283
           DD     +    +      I S+G   NA  +    +    Q     Q +       +EV
Sbjct: 218 DDPAVREVADTVNC----PITSYGFGDNAQVRAVNVRAVGGQMHFTAQRRNGVVLPDLEV 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGF 338
           V +  G H   N L  + + + L       +KAL+ F   +G G+R++      A   G 
Sbjct: 274 VLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEF---KGVGRRFQRYGEIPAKGGGT 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           FTLID+ Y  +P  M A +S      P   G+R+
Sbjct: 331 FTLIDD-YGHHPVEMAATLSAARGAFP---GQRL 360


>gi|296332043|ref|ZP_06874507.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675562|ref|YP_003867234.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150814|gb|EFG91699.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413806|gb|ADM38925.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 38/269 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K T +A+TG+ GKT+T  +L   + + K T   IG             +   + ++ +F
Sbjct: 99  KKFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGD---------GTGQGNENSEYFVF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++  +P  A++T I   H   FS I+++  A  E+   L+    I
Sbjct: 150 E-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEM--ALQVNKGI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD        K HA  +  +Y +G  +  DFQ R   + +E +  +V ++    + 
Sbjct: 201 IACGDDEHL----PKIHA-NVPVVY-YGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDT 254

Query: 284 VH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI--KALSVFHPKEGRGKRYRCALNQGFF 339
            +    G+H   N+L +L ++++    ++D++I   AL  F    G  KR       G  
Sbjct: 255 FYIPAYGHH---NVLNSLAVIALCHYEEIDSSIIKHALKSF----GGVKRRFNEKQLGDQ 307

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGE 368
            LID+ Y  +P  +K  I    Q  P  E
Sbjct: 308 VLIDD-YAHHPTEIKVTIEAARQKYPDRE 335


>gi|294666420|ref|ZP_06731664.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603789|gb|EFF47196.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 477

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    DT  +AL  F    G G+R+          G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTGTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|294627725|ref|ZP_06706307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598077|gb|EFF42232.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 477

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    DT  +AL  F    G G+R+          G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTGTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|296121825|ref|YP_003629603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296014165|gb|ADG67404.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 498

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEML----TIALSSIKKTYACIGSYNNHIGVPLTLARMP--V 158
           R  A + A+TGS GK+TT  ML     +A  S     A +G    +IGV L L ++P   
Sbjct: 126 RCPAPVAAVTGSNGKSTTTAMLHRICEMASGSPGLRRAWLG---GNIGVSL-LDQLPAIT 181

Query: 159 DVDFGIFELG---MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             D  + EL    +  L +I +      P IA++T  +  HL    G+++  SAK  +F 
Sbjct: 182 SDDLVVMELSSFQLYWLNQIEW-----SPSIAIVTNFSANHLDWHDGLDDYRSAKQTMFR 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              ++    +N DD         +  LG +T
Sbjct: 237 WQNESDVAVINLDDPDVCQWPGPALRLGFQT 267


>gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
 gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
          Length = 467

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 149/370 (40%), Gaps = 46/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G + +A  Q+R     +    M    ++     +++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGLAPDA--QVRAVNVEARDGKMHFTAMREDAAPLDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337
           V +  G H  QN L  + I + L        +AL+ F+    R +RY           +G
Sbjct: 271 VLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGEPRG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDV
Sbjct: 386 TVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALAALVRDGDV 445

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 446 VITMGAGSIG 455


>gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Geobacter sulfurreducens KN400]
          Length = 509

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
          +NG+  DSR +     FFA+KG   DGHDFI  A ++GA  VV+  +  A  G
Sbjct: 23 INGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCG 75


>gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 541

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 22/232 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLS--- 82
           V GIS+DSR+I P + + A+ G    G  F   AV  GA  ++  TD   A I S     
Sbjct: 42  VTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAIL--TDRAGAQIASAEVPQ 99

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV GV +       LA     R    +  +TG+ GKTTT  ++   L++++++   IG
Sbjct: 100 HVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSGLIG 159

Query: 142 SYNNHIG---VPLTLAR-MPVDVDFGIFELGMSHLGEI--RFLTHLVRP--------HIA 187
           +     G   +P TL      DV   +  +   +LG +     +H +           +A
Sbjct: 160 TIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVFDVA 219

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             T +   HL     + E A+ KAE+F    ++    +  DD +   + A++
Sbjct: 220 GFTNLTQDHLDLHGTMAEYAATKAELFSS-RRSKRAVVTVDDQWGRQIAARA 270


>gi|239983058|ref|ZP_04705582.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291454889|ref|ZP_06594279.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291357838|gb|EFE84740.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
          Length = 467

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 23/205 (11%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYA 138
           L IPV    D L AL               IA+ G+ GKTTT  +L ++L+++ +  +YA
Sbjct: 92  LGIPVVHRSDALAALMD---------GTRPIAVAGTHGKTTTTSILAVSLAALGRDPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G  +     P + A        G  E+ ++   E     H   P +A++  +   H +
Sbjct: 143 IGGDLD----APGSNAL------HGTGEIFVAEADESDRSFHKYTPEVAIVLNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNA 256
           N++ IEEI  +       +   GT+ ++ D      L  +  A G+   T+ ++G++ +A
Sbjct: 193 NYASIEEIHESFETFAARIVPGGTLVISADHEGARELTRRLAAKGLPGVTVRTYGEAADA 252

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM 281
           D ++        +S + V++ G  +
Sbjct: 253 DVRVVSIVPQGLRSEVTVRIDGAEL 277


>gi|225028221|ref|ZP_03717413.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
 gi|224954533|gb|EEG35742.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
          Length = 466

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 140/372 (37%), Gaps = 69/372 (18%)

Query: 108 ATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           A  IA+ G+ GKTTT  MLT I L +       +G   + IG              G   
Sbjct: 117 AKSIAVAGTHGKTTTTSMLTHILLQADTDPTVSVGGMLDRIG--------------GNIR 162

Query: 167 LGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           +G S L    FLT             P  ++I  +   H+  F  IE+I ++  +     
Sbjct: 163 VGHSDL----FLTEACEYTNSFLEFYPLYSIILNVEEDHMDFFKDIEDIKNSFHKFASQT 218

Query: 218 EKTGTIFLNYD----DSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQC 266
              G I +N D    D     L  K    G+           +F K  NA + L    Q 
Sbjct: 219 ADDGLIIINGDMGHTDFILNGLSQKHVTFGLNPDNDYTAADITFDKEGNASYNLIAHGQ- 277

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E+  + ++++G+           H   N L  +     +   +D   K L  F    G 
Sbjct: 278 -EKGRITLKVKGR-----------HNVMNSLAAIACTEAIGLPLDAIRKGLLSF---GGT 322

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGD 377
            +R+    + G  T+ID+ Y  +P  ++A +S               PH   R  A L +
Sbjct: 323 HRRFEYKGSLGDVTVIDD-YAHHPTEIRATLSAAKDYPHDELWVIFQPHTYTRTKAFLPE 381

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
             +   L Q+ HI LA++ +   +    +S   V+ L     +   VHY  + + +  F+
Sbjct: 382 FAKA--LEQADHIVLADIYAAREVDTGEVSSKDVMKLLQEDGQD--VHYFPSFEEIKDFV 437

Query: 438 QSSLVDGDVVVV 449
           ++ +   D+++ 
Sbjct: 438 KAHVKGHDLLIT 449


>gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 18/308 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++    A L +    +A+ G+ GKTTT  M T+AL       AC    +  IG  L+  
Sbjct: 99  LHRSGALASLMAGKRAVAVAGTHGKTTTTSMTTVALQ------ACGLDPSFVIGGVLSTT 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                +  G   +  +   +  FL  L  P I ++T +   HL  +   E++  A  E  
Sbjct: 153 GTNAHLGTGDVFVAEADESDGSFL--LYEPTIGILTNVEADHLDYYGTPEKVREAFVEFC 210

Query: 215 EGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-M 272
            G+    GT+    DD     +  ++ A G   I  +G S++AD +LR+ +      + +
Sbjct: 211 AGIGADGGTVIACADDPGSLDVAQQARAQGTSVIL-YGTSESADVRLRELQSGLVSEFVL 269

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +V  Q + + V     G H A N    + +   L ADV  A   L  +    G  +R+  
Sbjct: 270 DVPGQAEPLPVALRQPGTHNALNATAAIAVAHSLGADVAKAASGLGGYG---GTRRRFEE 326

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   +ID+ Y  +P  ++A +S    +    EGR  A+      +   +  F  + 
Sbjct: 327 RGIAAGVRVIDD-YAHHPTELRAVLSAARGVVTD-EGRVWAIF--QPHLYSRTMEFRTEF 382

Query: 393 AEVLSLYN 400
            E L L +
Sbjct: 383 GEALGLAD 390


>gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 483

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 124/307 (40%), Gaps = 40/307 (13%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           SIPV    D+L         A L   +T + + G+ GKT+T  M  +AL +  +  + + 
Sbjct: 94  SIPVIRRSDLL---------AELMEGSTQLLLAGTHGKTSTTSMAVVALQAAGEDPSFV- 143

Query: 142 SYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                IG  L LA        G   + E   S    +R+     +P +AVIT I P HL 
Sbjct: 144 -----IGGQLNLAGTNAHQGAGEVFVAEADESDASLLRY-----KPDVAVITNIEPDHLD 193

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SK 254
            F   E+         + +   G + +  DD+       ++ A G+  ++ +G     S+
Sbjct: 194 YFGTAEKYFEVFDSFADRIPPGGHLVVCLDDAEAAACGQRARARGVN-VFGYGTAAAASR 252

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADV 310
             D         S+ ++ EV+L  G     V + +   G HM  N    L   +++ AD 
Sbjct: 253 YPDIPAAAVITASDTTFAEVELTIGGVQRTVRYTLSIPGQHMVLNAAGALVACTLVGADP 312

Query: 311 DTAIKALSVFHPKEGRGKRY--RCALNQGFFTLID--ESYNANPASMKAAISVLSQ-ISP 365
               + L+ F    G  +R+  +  L  G F  +   + Y  +P  + A ++   + +  
Sbjct: 313 GKLAEGLTGF---TGVRRRFELKGQLTGGRFAGVRVYDDYAHHPTEVTAVLTAARETVRA 369

Query: 366 HGEGRRI 372
            G+G ++
Sbjct: 370 AGQGGKV 376


>gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica
           CNB-440]
 gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinispora tropica CNB-440]
          Length = 514

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 32/226 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++  S+ + P + + A+ G    G +F+  A + GA  V+ + D  A+   + +P+ 
Sbjct: 42  VTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLTDPDGAAATAEVDLPML 101

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L  LA  V     +  T+I +TG+ GKT+T  ++   L +   T   IG+  
Sbjct: 102 VVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVESGLRAAGHTTGLIGTVE 161

Query: 145 NHIG---------VP--------LTLAR----MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +G          P        L  AR      V ++     L M  +G +RF      
Sbjct: 162 TRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVRFT----- 216

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             +   T     HL   +   +  +AKA++F+G  +     LN+DD
Sbjct: 217 --VGGYTNFGSDHLDFHADSVDYFAAKAKLFDG--RCEVEVLNHDD 258


>gi|90020496|ref|YP_526323.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
 gi|109892735|sp|Q21MG8|MURC_SACD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89950096|gb|ABD80111.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
          Length = 474

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 175/436 (40%), Gaps = 79/436 (18%)

Query: 59  HAVQKGAGLVVVNTDMVAS-------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           HA       VVVN+  V S            IP+    ++LG L       R R     I
Sbjct: 68  HATNVDGASVVVNSSAVESGNPELMEAREKRIPIVRRAEMLGEL------MRYRHG---I 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           A+ G+ GKTTT  +++  L++ KK     IG   N  G                     +
Sbjct: 119 AVAGTHGKTTTTSLISSILAAGKKDPTFIIGGLLNSAG-------------------SNA 159

Query: 171 HLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            LGE R+L            HL +P ++V+T I   H+  + G   ++     +    L 
Sbjct: 160 GLGESRYLVAEADESDASFLHL-QPMVSVVTNIDADHMDTYEGDFSKLKQTFIDFLHNLP 218

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QL 276
             G   +  DD    EL+ A S     +++ ++G ++++D++    +Q   +   +V + 
Sbjct: 219 FYGLAVVCGDDPIVTELIPAIS-----RSVVTYGFNEDSDYRAFDVRQDGSKLRFKVARP 273

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
           +G  ++E+  +  G H   N    + + S    D D     L+ F    G G+R+     
Sbjct: 274 EGLATLELFLNMPGKHNVLNATAAVAVASEEKVDDDAIQNGLANFM---GVGRRFEIYGE 330

Query: 333 -ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +  G   ++ + Y  +P  + A I+ +    P    RR+ ++         ++  + D
Sbjct: 331 FEVGAGPTAMLVDDYGHHPREVAATIAAVRDGWPD---RRLVMVYQPHRYSR-TRDLYED 386

Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSS 440
             EVLS  +   +  V+ +G   +   D+  L R+I         + E ++G+   I+  
Sbjct: 387 FVEVLSTVDQLVLLEVYSAGEDPIPGADSRHLSRTIRTRGVVDPIFVEGVEGVPAVIKDI 446

Query: 441 LVDGDVVVVKSSNSCG 456
           +  GD+++ + + + G
Sbjct: 447 VQPGDIIITQGAGNVG 462


>gi|229586685|ref|YP_002845186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           africae ESF-5]
 gi|228021735|gb|ACP53443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia africae
           ESF-5]
          Length = 500

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S SIP+    D+L A +K             IAITG+ GK+TT  +++  L+S    Y  
Sbjct: 85  SFSIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G    +IGV    A+     D  + EL    L  ++  T      IAV+  I P HL  
Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +    +AK++IF+ +++     +N D+ +
Sbjct: 186 HQDMTCYIAAKSKIFDRMDQESYAVINIDNDY 217


>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Geobacter sulfurreducens PCA]
 gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
          6-diaminopimelate ligase; AltName:
          Full=Meso-A2pm-adding enzyme; AltName:
          Full=Meso-diaminopimelate-adding enzyme; AltName:
          Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
          ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase;
          AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
          [Geobacter sulfurreducens PCA]
          Length = 509

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
          +NG+  DSR +     FFA+KG   DGHDFI  A ++GA  VV+  +  A  G
Sbjct: 23 INGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCG 75


>gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           parainfluenzae T3T1]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 45/349 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           II ITGS GK+T    +T  +  + K          +IG+P  L+ +  D D  + EL  
Sbjct: 108 IIGITGSNGKST----VTTLVYEMAKAAGIKVGMGGNIGIP-ALSLLNEDCDLYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+   E   T  +N +D
Sbjct: 163 FQLET----TYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAE---TAVVNLED 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEVVHH 286
                 + ++ A   K + SF +++ AD+ L+   +  +Q  M   EV L      +V  
Sbjct: 216 KL-TFGEGENQA---KKVVSFAENQ-ADYWLKT--ENGKQYLMAKEEVILPCDEATLV-- 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L    +   +  +++    AL  F   +G   R++ A        I++S 
Sbjct: 267 --GRHNYMNILAATALAQAVGINLEAIRTALRQF---KGLDHRFQLAHQANGVRWINDSK 321

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S  AA++ L     + EG    +LG              D +E+  L N  H+  
Sbjct: 322 ATNVGSTVAALAGL-----YVEGTLHLLLG--------GDGKGADFSELADLINQPHIST 368

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             F     K     S   H  ETM+    F++  L  GD+V++  S +C
Sbjct: 369 YCFGRDG-KQLAALSSQSHLFETMEQAISFLRPHLKSGDMVLL--SPAC 414


>gi|329901113|ref|ZP_08272729.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549212|gb|EGF33800.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 143/367 (38%), Gaps = 43/367 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAQGGLDPTFV--------IGGRLTSAGANAKLGAGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +     ++  A  +    L   G   L  
Sbjct: 160 EADESDASFLN--LSPVIEVITNIDADHMETYEHDFNKLKQAFVDFTLRLPFYGIAVLCL 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286
           DD     +  +      K I ++G  + AD +    +         V   G   + +  +
Sbjct: 218 DDVHVREIMPRI----AKPIMTYGFHEEADVRAIDARAVGGLMQFTVIQDGYPPLPISLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRY-------RCALNQGF 338
             G H  QN    + I   L+ AD DT  KAL+ F+    R  RY       R     G 
Sbjct: 274 QPGMHNVQNACAAIAIARELSVADCDTQ-KALAEFNGVGRRFTRYGEIAFAGRDGKPGGT 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F L+D+ Y  +P    A +S      P   GRR+ VL         ++    D  +VLS 
Sbjct: 333 FALVDD-YGHHPVETAATLSAARGAYP---GRRL-VLAFQPHRYTRTRDLFEDFVKVLSS 387

Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   +   D  AL  ++ V       + E +  +   I + L DGDVV
Sbjct: 388 TDALVLAEVYAAGEQPIVAADGRALAHALRVAGKVEPVFVEVIADMPETIMNMLRDGDVV 447

Query: 448 VVKSSNS 454
           +   + S
Sbjct: 448 ITMGAGS 454


>gi|308174670|ref|YP_003921375.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607534|emb|CBI43905.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554600|gb|AEB25092.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           TA208]
 gi|328913005|gb|AEB64601.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           LL3]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 119/299 (39%), Gaps = 36/299 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K T +A+TG+ GKT+T  +L   +   K T   IG             +     +
Sbjct: 95  AEYMKKYTSVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGD---------GTGKGNESSE 145

Query: 162 FGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           + +FE       E R  FL++  +P  A++T I   H   F+ I+++  A   +   L+ 
Sbjct: 146 YFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFANIDDVFDAFQNM--ALQV 196

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              I    DD +      K HA  +  +Y +G  +  DFQ R   + +E +  +V ++  
Sbjct: 197 NKGIIACGDDEYL----PKIHA-NVPVVY-YGTGEENDFQARNIVKNTEGTTFDVFVRNT 250

Query: 280 SMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +  +    G+H   N L  + +      DV+     L  F    G  KR       G 
Sbjct: 251 FYDTFYIPAYGHHNVLNSLAVIALCHYEEIDVNMIKLGLESF----GGVKRRFNEKVIGS 306

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             LID+ Y  +P  +K  I    Q  P  E   IAV          +QSF  + AE LS
Sbjct: 307 QVLIDD-YAHHPTEIKVTIEAARQKYP--EREIIAVF--QPHTFTRTQSFLDEFAESLS 360


>gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 548

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 141/379 (37%), Gaps = 50/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR + P + + A+ G  + G  F   A   GA   + +  +        +P  
Sbjct: 59  VRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQARASGAAAALSDRPLPG------LPTL 112

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG- 141
            V D    L  LA  A L    +    +  +TG+ GKT+T  +L   L S       I  
Sbjct: 113 VVPDPRAVLGPLA--AHLHDHPSHHLEVYGVTGTNGKTSTTHLLDAGLRSAGHRTGMISG 170

Query: 142 --------SYNNHIGVP------LTLARM------PVDVDFGIFELGMSHLGEIRFLTHL 181
                   S       P       TLA +         V+     L +  +   RF    
Sbjct: 171 IRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHGLALHRVDGTRF---- 226

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
                AV T +   HL      E   +AKA +F    +     +N DD+    L A+   
Sbjct: 227 ---RAAVFTNLGRDHLDLHGDQESYFAAKASLF-APHRCALAVVNVDDAHGRRLAAQVRV 282

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T +S    + AD++  + +  ++++   +   G    V  H +G H   N L  + 
Sbjct: 283 --PVTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVDNALGAVA 340

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +     +V+  ++ +       GR +  R    Q F  L+D ++N   A+ +  +  L 
Sbjct: 341 ALHAGGLNVEDVLRGMEDLTAVSGRLQ--RIDEGQPFLALVDYAHNV--AAQRRLLPFLR 396

Query: 362 QISPHGEGRRIAVLGDMCE 380
            ++    GR + VLG   E
Sbjct: 397 TLT---GGRLVVVLGATGE 412


>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+    K G   LN +D
Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                              +FG+++N       + + S   W++ +  GK   +V     
Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D+   AL  F   +G   R++ A      
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHQANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +      L+ F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGALLAKF-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1]
 gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1]
          Length = 482

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L    A   +  T+         IG  LT A     +    + + 
Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     +  +      +   ++G S+ AD +    +Q   Q+   V +   + +EV  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLEVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  I+ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNALATIAIATDEGITDEAIIQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL   N+ 
Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWPS---RRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451
               V+ +G   +   D+      +     +D +++         ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILICQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDVG 461


>gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 464

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 27/192 (14%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L IPV    ++L         ARL  +   IA+ G+ GKTTT  M+   L          
Sbjct: 98  LGIPVMHRGELL---------ARLMQEKKGIAVAGTHGKTTTSSMIAYVLEK-------- 140

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLS 198
             ++  I V   +  +  +   G  E  ++   E    FL  L  P+ AVIT I   HL 
Sbjct: 141 EGFDPVIAVGGEIVDLGYNAKAGQGEYMVAEADESDGSFLKLL--PYAAVITNIEADHLD 198

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +   EEI  A  +  + +   G     +D+    E+LK        K  +++G S  +D
Sbjct: 199 YYQSFEEIKKAFKKFADNIRPEGFGVFCWDNLQVREMLKGYK-----KRKFTYGFSPGSD 253

Query: 258 FQLRKWKQCSEQ 269
           F LR +++   Q
Sbjct: 254 FMLRDYREEQNQ 265


>gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
 gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
          Length = 472

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  +L   L  + +     G    +IG  +     PVD    + EL  
Sbjct: 122 VIAVTGSNGKSTTVALLHHILEHVGRNSQMAG----NIGRGVLDIDPPVDGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T + P HL   +G+    +AK  +F EG      I ++ D
Sbjct: 178 YQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGIDED 233

Query: 229 DSFF 232
           +  F
Sbjct: 234 EGLF 237


>gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
 gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
          Length = 476

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 53/271 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+    SSI   YA  G               P  V+ G+ +    
Sbjct: 107 IAVAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGV 146

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 147 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMETYQGDFENLKQTFINFLHN 205

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 206 LPFYGRAVMCVDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQIGPQGHFTLRR 261

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           Q KS + V  +  G H A N    + + +    D +  ++ALS F   +G G+R+    N
Sbjct: 262 QDKSLLTVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALSSF---QGTGRRFDFLGN 318

Query: 336 ---------QGFFTLIDESYNANPASMKAAI 357
                     G   L+D+ Y  +P  + A I
Sbjct: 319 FPLEKVNGKSGSVMLVDD-YGHHPTEVSATI 348


>gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
 gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
          Length = 544

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 51/385 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSL-- 81
           V G+ + ++ I   + F A+ G    G  F + A+ +GA  ++ +    +++ + G    
Sbjct: 52  VKGVDLRAQGIVADDLFAALPGARTHGAQFAVDALGRGATAILTDEAGLELIEAAGKAPD 111

Query: 82  -SIPVF---GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            S+PV       DVLG ++   +  R   K  ++ ITG+ GKTTT  +L  A++   +  
Sbjct: 112 RSVPVLVHPNPRDVLGEISA-EIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKP 170

Query: 138 ACIGSYNNHIG---VP--LTLARMP-----------VDVDFGIFE-----LGMSHLGEIR 176
             +G+    I    VP  LT    P             +D  + E     L +  +  IR
Sbjct: 171 GLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIR 230

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF--- 231
           F        I   T ++  HL      EE   AKA +F  E   +     +  DD +   
Sbjct: 231 F-------DIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRR 283

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L A   +  + T+ +            +  +   Q++  V   G+S  V     G +
Sbjct: 284 MAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRY 343

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N  + L +      D D A++AL         G+  R    Q F  ++D  Y   PA
Sbjct: 344 NVANAALALTVSFAAGLDPDAAVRALGTVDVP---GRVQRIDRGQSFLAVVD--YAHKPA 398

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           +++A I+ L    P   GR   V+G
Sbjct: 399 ALEAVIATLRNQVP---GRVAVVVG 420


>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
 gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 496

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 38/236 (16%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G+ +DSR + P + +  + G + DGHDF   A+ +GA  +     +V  I  L IP 
Sbjct: 30  LIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAAL-----LVERILPLDIPQ 84

Query: 86  FGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             V  V   +  LA       AA+L     ++ +TG+ GKTT   ++    +   K    
Sbjct: 85  LQVKKVREVMGNLAANLYDHPAAKLE----VVGVTGTNGKTTITYLVESIAAGEGKKVGL 140

Query: 140 IGSYNNHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185
           IG+    I G  L   R  P  +D       M   G ++     V  H            
Sbjct: 141 IGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEG-VQLAVMEVSSHALVFGRVTGCEF 199

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELL 235
              + + +   HL     +EE   AKA++F GL      K G +  N DD   E L
Sbjct: 200 DAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVV--NGDDPAAETL 253


>gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea
           DSM 7271]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 130/373 (34%), Gaps = 60/373 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR       F AI G   +GH++I  A++ GA  +V        +  +S  V 
Sbjct: 23  ITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSGATAIVCEQLPQQPLPGVSYIVV 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                  AL           K  ++ +TG+ GKTT   +L          Y         
Sbjct: 83  PNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTIATLL----------YQLFRKAGQK 132

Query: 147 IGVPLTLARMPVDVDFGIFE--------LGMSHLGEI-----------RFLTHLVRPHIA 187
            G+   L+ + V VD   FE        L ++H   +              +H +  H  
Sbjct: 133 AGL---LSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHRT 189

Query: 188 --------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELL 235
                   + T +   HL            K   F+ L  T    +N DD       +  
Sbjct: 190 EGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDKNGAFMLQNT 249

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           KA+     +KT        +AD++        E  +  + L+    EV    IG   A N
Sbjct: 250 KAQKKTYALKT--------HADYK----AYIIESRFDGLLLRINQHEVWTKLIGEFNAYN 297

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L      ++L+ D   A+  +S   P  GR +    A   G  T++D  Y   P +++ 
Sbjct: 298 LLAVYATATLLSIDEIEALTLISAIEPVAGRFQYAVSAT--GVITIVD--YAHTPDALEN 353

Query: 356 AISVLSQISPHGE 368
            +  ++ I  H E
Sbjct: 354 VLKTINDIRTHNE 366


>gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
 gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 111/263 (42%), Gaps = 32/263 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +AITG+ GKT+T  +L   + S K T   IG   + +G          + ++ +FE  
Sbjct: 102 TNVAITGAHGKTSTTGLLAHVMQSAKPTSYLIGD-GSGMGKE--------NSEYFVFE-- 150

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL++   P  A++T I   H   FS I+++  A   +   L+    I   
Sbjct: 151 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFSDIDDVFDAFQNM--ALQVKKAIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD     ++AK     +  +Y +G ++  DFQ R   + +E +  +V ++    +  + 
Sbjct: 204 GDDEHLPKIQAK-----VPVVY-YGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +    + DV+    AL+ F    G  KR       G   LID+ 
Sbjct: 258 PAYGNHNVLNSLAVIALCHYESIDVELIKGALTTF----GGVKRRFNEKVVGAQVLIDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGE 368
           Y  +P  ++  I    Q  P  E
Sbjct: 313 YAHHPTEIEVTIEAARQKYPDRE 335


>gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 45.8 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIG 79
           ++ ++IDSR++ P   F A +G    G DF   A+ +GA  +        VN        
Sbjct: 31  ISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQALAQGAVAIAWEPNGPEVNRQAERLAT 90

Query: 80  SLSIPVFGVDDVLGALNKLA--VAARL----RSKATIIAITGSVGKTTTKEMLTIALSS 132
            L IP+  V+     L +LA  +AAR         T+I +TG+ GKT+   +L  AL S
Sbjct: 91  QLPIPLIRVE----GLTRLASLIAARFFAYPSRSMTVIGVTGTNGKTSVSHLLAQALDS 145


>gi|161504752|ref|YP_001571864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866099|gb|ABX22722.1| hypothetical protein SARI_02875 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 151/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A +  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATVLNVTEDHMDRYPFGLQQYRAAKLSVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSSLARYLTGDRIRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AEQTETMEEAMRLLAPRVQSGDMVLL--SPAC 414


>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
 gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
          Length = 496

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 156/397 (39%), Gaps = 44/397 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+ G     +    + G+  +S +    + F  + G   DG DF   A+  GA 
Sbjct: 3   LRELLAAVDGVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASGAL 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--------KATIIAITGSVG 118
             +V+   +        P  G   VL A +     A+L +        K  ++ +TG+ G
Sbjct: 63  AAIVSPAALQKN-----PPTGEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGS-YNNHIGVPLTLARM-PVDVD--------------F 162
           KTTT  ++   L+    + A +G+ Y    G   T     P  VD              F
Sbjct: 118 KTTTTHLIEFLLTKANLSTALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEAVNAGCEF 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G  E+    L + R L       +AV + +   HL   + +E+  +AKA +F      G 
Sbjct: 178 GAMEVSSHALAQGRVLG--CEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGR 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD + + L A   +L  + ++S+   + +AD  +       E + +   L     
Sbjct: 236 AIINADDDYGQRLIA---SLSSERVWSYSVNNHSADLWMSDLSY--EPNGVSGMLHTPKG 290

Query: 282 EVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            V      +G +  +N+L  +G V  L  D+     A+  F    GR +R +    Q   
Sbjct: 291 NVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEIS 350

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++D  Y   P S++   ++L    P   G+ I V G
Sbjct: 351 VIVD--YAHTPDSLE---NLLKAARPFIPGKMICVFG 382


>gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus 10329]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 54/265 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GK+T  ++  +   +   T    G    +IGVP  L  +  D D  + EL  
Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALELLEQDADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++ + A    ++  H+  + G+ +  +AK  IF+  E      +N DD
Sbjct: 165 FQLET----TSSLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFDNAE---LAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                   +++      + +FG               S++    +++ G    ++ HG  
Sbjct: 218 Q-------ETYPEVEMPVVTFG---------------SDEQAYGLEVDGSRTWLLDHGQR 255

Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335
                    +G H   N L+ L ++     D   A+ AL     K   G  +RC   A N
Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310

Query: 336 QGFFTLIDESYNANPASMKAAISVL 360
           +G    +++S   N AS  AA+S L
Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGL 334


>gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           MSMB43]
          Length = 465

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 48/369 (13%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  LT A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +      L  K +  +G S +A  +    +    +    V   G+  + VV +
Sbjct: 218 DDANVRQIV----PLISKPVVRYGFSADAQVRAENVEARDGRMHFTVLRDGREPLPVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR-----CALNQGFFT 340
             G H  QN L  + I + L    D AI +AL+ F+   G G+R++        + G +T
Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADAAIQQALAEFN---GVGRRFQRYGEIPVADGGAYT 329

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID+ Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +
Sbjct: 330 LIDD-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVD 384

Query: 401 ---ISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------GDVV 447
              ++ V+ +G   +  A  DAL R++    +  ++ +F+     + D        GDVV
Sbjct: 385 ALVLTEVYAAGEAPISTANGDALSRALRA--AGKVEPMFVAAVDEVPDALAKLARAGDVV 442

Query: 448 VVKSSNSCG 456
           +   + S G
Sbjct: 443 ITMGAGSIG 451


>gi|218661065|ref|ZP_03516995.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli IE4771]
          Length = 47

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG 48
          M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+P  +    +G
Sbjct: 1  MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGRSLLRDQG 47


>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           VLG +   A  A  R    IIAITGS GKTT   ++              G    +IG P
Sbjct: 99  VLGDIEIFAHIANRRGD-KIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAG----NIGTP 153

Query: 151 LTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           +  A M          + EL    L      T  +RP  A +  I+  HL  +  + + A
Sbjct: 154 VLEAEMQRGGKKAGVWVLELSSFQLEN----TESLRPSAAAVLNISEDHLDRYDDLLDYA 209

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
             K +IF G+   G   LN DD+    +K      G+K    F   K AD+ L +
Sbjct: 210 HTKDKIFRGV---GVQVLNADDALCRAMKRAGR--GVKW---FSLEKQADYWLER 256


>gi|315636191|ref|ZP_07891445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arcobacter butzleri JV22]
 gi|315479552|gb|EFU70231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arcobacter butzleri JV22]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 109/276 (39%), Gaps = 32/276 (11%)

Query: 135 KTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K Y    S N   G+ L + + +P D    I E G    G+I  +T  + P I VI ++ 
Sbjct: 6   KVYKTPRSVNTIGGIVLDVNKDLPADTQIYIAEAGARVKGDIEEITMFLEPQICVIGSVG 65

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             H+  F  +E I + K EI +    K G +                 ++ I    +  K
Sbjct: 66  EQHIEYFKTLENIINTKMEILKSPNMKMGFV---------------HESVPISNSQNITK 110

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             N+   L   K   +  W +V++ G         +G   A N+   + +   L  D+  
Sbjct: 111 FPNS---LHIVKSNLDGIWFDVEVGGNIEHFYAPILGSFNAINLTAVILVAHYLGMDILE 167

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              AL+     E R ++           ++D+S+N N   M  A+++ S      EGR++
Sbjct: 168 IKAALTTLPQVEHRLQKIEA----NGKIIVDDSFNGNLEGMLEAVNICSSY----EGRKV 219

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            +   + E    +   +I LA+ +   N  +V L+G
Sbjct: 220 IITPGLVES---TDEANILLAKAID-ENFDYVILTG 251


>gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 539

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 29/258 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LS 82
           V+G+++ S    P   F AI G    G  F   A++ GA L++  TD V    +    L 
Sbjct: 58  VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLIL--TDEVGRREAFERRLG 115

Query: 83  IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +    +  L   + +   ++ T +A+TG+ GKTTT  ++  AL+S     +  
Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175

Query: 141 GSYNNHIGVPL------TLARMPVDVDFGIFELGMSHLGE--IRFLTHLVRPH------- 185
           G+    +G P+      T A  PV   F +      H G   I    H +  +       
Sbjct: 176 GTVETSVG-PVSFEAVRTTAEAPVVARF-LAATDQYHCGAAVIELSAHALSLNRVDGIVF 233

Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL  +  +E   +AKA +F   E +    +  DD +   L    HA   
Sbjct: 234 DVAAFTNLQHDHLDYYGDMETYFAAKALLFTP-EHSRRGVVCVDDEWGRRL--ADHATVP 290

Query: 245 KTIYSFGKSKNADFQLRK 262
            T  S    + AD+Q+R 
Sbjct: 291 VTTVSALTHEAADWQVRN 308


>gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
 gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
          Length = 495

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 153/384 (39%), Gaps = 46/384 (11%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  PQ  + G+++DSR +     F A+ G    G  FI  A++KGA  ++ +    A+  
Sbjct: 20  GADPQ--IRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD----AAGA 73

Query: 80  SLSIPVFGVDDVLGAL-------NKLAVAARL---RSKATIIAITGSVGKTTTK------ 123
            ++  V   D+   AL         LA AA L       T++A+TG+ GKT+        
Sbjct: 74  GIAAKVL--DESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVRQI 131

Query: 124 ------EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGM---SHLG 173
                 E + +  + I+  ++   ++      P+TL R +    + G+    M   SH  
Sbjct: 132 WTELGHEAVNMGTTGIEGAWSYPLAHTTP--EPITLHRALAAAAEAGVTHAAMEASSHGL 189

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFF 232
           + R L   V+   A  T     HL      E   +AKA +F   L   G   +N +D   
Sbjct: 190 DQRRLDG-VQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRG 248

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             ++A + A G + I       +      ++    +   M      K  +V  + IG   
Sbjct: 249 AEMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQD--MRFAWHDKPYQVRLNLIGGFQ 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A+N+L+  G+      D +   + L       GR  +     + G    +D  Y   P +
Sbjct: 307 AENVLLACGLAIAGGEDPERVFETLPHLTTVRGR-MQLAAERDNGSAVFVD--YAHTPDA 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           + +AI  L    PH  GR IA++G
Sbjct: 364 VASAIKAL---RPHVLGRLIAIVG 384


>gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
 gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +N + +  R   +A  + ITG+ GK+T   ++ + L+ +  T    G+  +       L+
Sbjct: 93  INDIELLFRHSEQAAFVGITGTNGKSTVTTLVGLMLARLPGTTRTGGNLGD-----AALS 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               DV+  + EL    L  I        P +A +  ++  HL  ++G++    AKA IF
Sbjct: 148 LWQADVERYVLELSSFQLESIEGF----HPEVAALLNLSDDHLDRYNGLQGYLRAKARIF 203

Query: 215 EGLEKTGTIFLNYDDSFFELLK 236
           +   +     +N DD   + ++
Sbjct: 204 QRQTQRDRAVINADDPALQPVR 225


>gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
 gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
          Length = 456

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 33/217 (15%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP D  F + EL    L  I+      RP  A+I  I P HL+    +E   +AK  IFE
Sbjct: 154 MPAD-GFLVAELSSYQLETIKHF----RPIGAIILNITPDHLARHKTMENYIAAKERIFE 208

Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIK--------TIYSFGKSKNADFQLRKWKQ 265
               T  + LN DD     +  +A SH L I           Y+ G+   A   + K+  
Sbjct: 209 NQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAKFVI 268

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E                 H  G H  +N+L  + +   L   V+T  + +S FH  E 
Sbjct: 269 ADEDI---------------HIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEH 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           R +R +      F+   ++S   N  S+  A+    Q
Sbjct: 314 RLERVKTIDGITFY---NDSKATNVDSVVKALESFDQ 347


>gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 514

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 93/240 (38%), Gaps = 35/240 (14%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G +P   V+ +  DSR +    AF A+KG   DGH ++  A   GA L +V  +  A + 
Sbjct: 21  GALPVSIVDLVD-DSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIVEDEAAARV- 78

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTY 137
            + +P   V D   +    A A        I   A+TG+ GKTTT  +L   L    +  
Sbjct: 79  -IDMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRA 137

Query: 138 ACIGSYNNHIG---------------VPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHL 181
           A IG+    IG                P+ L R + V  D G+  + M         +H 
Sbjct: 138 ASIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAME------TSSHA 191

Query: 182 VRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +  H         AV T +   HL     +E    AK E+   L   G    N DD  ++
Sbjct: 192 LHQHRVDGVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAPDGVACFNIDDVTWQ 251


>gi|207110009|ref|ZP_03244171.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219
           I E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +   LEK
Sbjct: 14  IAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLEK 71


>gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
 gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 30/286 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    IAI G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 100 LAELMRLKS---CIAIAGTHGKTTTTSMVATLLDAGALDPTVINGGIINAYG---TNARL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E   S   +  FL   V   +A++T + P HL +F   E +  A     EG
Sbjct: 154 GAG-DWMVVEADES---DGTFLKLPV--DVAIVTNVDPEHLDHFKTFEAVQEAFRHFVEG 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D +  + L  K   +  + I ++G++  AD +L   +  +  S  +V++
Sbjct: 208 VPFYGFAVMCIDHAVVQALVGK---IEDRRIITYGENPQADARLVDLQPFTGGSKFKVEI 264

Query: 277 QGKSMEVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +     H          G H A N    + +   +    +   KAL+ F    G  +R
Sbjct: 265 RHRKAGAAHVISDLVLPMPGRHNALNATAAIAVAYEVGMSDEAIRKALAGFG---GVKRR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +         T+ID+ Y  +P  + A   VL       +GR IAV+
Sbjct: 322 FTRTGEWNGVTVIDD-YGHHPVEIAA---VLKAARDSTKGRVIAVV 363


>gi|192292413|ref|YP_001993018.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           TIE-1]
 gi|229620427|sp|B3QFN0|MURC_RHOPT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|192286162|gb|ACF02543.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           TIE-1]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 42/327 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      L       IPV    ++L  L +L          + +AI G+
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L +       I G   N  G   T AR+    D+ + E   S   + 
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVINGGIINAYG---TNARLGGG-DWMVVEADES---DG 168

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            FL   +   +A++T + P HL +F   + +  A     E +   G   +  D    + L
Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288
             K   +  + I ++G++  AD +L         S  +V  + +     H          
Sbjct: 227 VGK---IEDRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAHEIADLKLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  
Sbjct: 284 GRHNALNATAAIAVAHELGLSDDTIRKALAAF---GGVRRRFTKTGEWNGVTIIDD-YGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375
           +P  + A +    Q +    G+ IAV+
Sbjct: 340 HPVEIAAVLKAARQST---SGKVIAVV 363


>gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phymatum STM815]
 gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum
           STM815]
          Length = 512

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIPVFGVDD 90
           DSR IAP + F A      D   FI  A+++GA  V+V  D  A     +L + V  +++
Sbjct: 34  DSRKIAPGDVFLAYAVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALMVAVPRLNE 93

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           + G +   A          +I +TG+ GKT+    ++ AL+++ +  A IG+  +  G+P
Sbjct: 94  LTGTIAS-AWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAIIGTLGS--GMP 150

Query: 151 LTL 153
             L
Sbjct: 151 GQL 153


>gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 494

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           VN I+ DSR       F A KG   D H F    V++G  +VVVN   ++   +  + +P
Sbjct: 23  VNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQGDVTQVIVP 82

Query: 85  VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                      + L VA+ L          + T I +TG+ GKT+   M+      + K 
Sbjct: 83  -----------DTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKG 131

Query: 137 YACIGSYNNHIGVPLT--LARMPVDV-------------------DFGIFELGMSHLGEI 175
            A +G+    I   +T  +   P  V                   +     L +  L  +
Sbjct: 132 SAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGV 191

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSF 231
            F        +A+ + +   HL     +E    AK+ +F    + L +   + +N DD F
Sbjct: 192 EF-------DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPF 244

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              LK+ +    +    ++G  + A F      +  +    +      +  V    IG  
Sbjct: 245 STYLKSVTPYESL----TYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRF 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              N++  +  V +  A ++T  K ++   P EGR
Sbjct: 301 NIANLMAAMLGVWVKGAPLETVTKVVADLEPVEGR 335


>gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila
           L48]
 gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48]
          Length = 482

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L    A   +  T+         IG  LT A     +    + + 
Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     +  +      +   ++G S+ AD +    +Q   Q+   V +   + +EV  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLEVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNALATIAIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL   N+ 
Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWPS---RRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451
               V+ +G   +   D+      +     +D +++         ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILICQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDVG 461


>gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 22/236 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTL 153
           ++ + ++ RL  +A II+ITG+ GKT++  M+   ++      ACI S    +IG  + L
Sbjct: 84  ISDIELSYRLYPQAKIISITGTNGKTSSTSMVNHIVNE-----ACIKSIAVGNIGEGI-L 137

Query: 154 ARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +M  + D F   EL    L +    T    PHIA IT I   H+      E+  ++K  
Sbjct: 138 WQMYNNKDAFFACELSSFQLHD----TKTYHPHIACITNITEDHIDWHGSFEDYINSKLN 193

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-W 271
           I +  ++   + +N++D   +  K    A     +Y F  SKN   ++ +     + + +
Sbjct: 194 ITKNQDENDFLIINHEDKILQDHKKDYKA----QVYEFS-SKN---EVERGAYLKDGAIY 245

Query: 272 MEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ + + K ++V     IG H  +N+++ L    +    +   IK L  F   E R
Sbjct: 246 LKDKEEIKVIDVDELSVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIEHR 301


>gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
 gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
          Length = 484

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 18/281 (6%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           V A+L +  T + +TG+ GKTTT  ML +AL        C   ++    V   L     +
Sbjct: 107 VLAKLMAGHTTLMVTGTHGKTTTTSMLIVALQH------C--GFDPSFAVGGDLGEAGTN 158

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              G  E  ++   E         P +AV+T I   HL  F   E   +      E L  
Sbjct: 159 AHHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTP 218

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQ 277
            G +    DD     L  ++ ALG++ +  +G +   D    L  W+Q    +   +QL 
Sbjct: 219 GGALIACVDDPGSAALAERTAALGVR-VLRYGSAGGRDLAGALVGWEQQGTGAVAHIQLA 277

Query: 278 GKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           G+S          G HMA N L  L     + AD DT +  L+ F   EG  +R+     
Sbjct: 278 GESAPRAMRLSVPGRHMALNALGALLAALQVGADPDTVLDGLAGF---EGVRRRFELVGT 334

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPH-GEGRRIAVL 375
                + D+ Y  +P  + A ++ L  ++   G+GR + V 
Sbjct: 335 ATGVRVFDD-YAHHPTEVAATLAALRAVTDQAGDGRAVVVF 374


>gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 494

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 57/335 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           VN I+ DSR       F A KG   D H F    V++G  +VVVN   ++   +  + +P
Sbjct: 23  VNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQGDVTQVIVP 82

Query: 85  VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                      + L VA+ L          + T I +TG+ GKT+   M+      + K 
Sbjct: 83  -----------DTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKG 131

Query: 137 YACIGSYNNHIGVPLT--LARMPVDV-------------------DFGIFELGMSHLGEI 175
            A +G+    I   +T  +   P  V                   +     L +  L  +
Sbjct: 132 SAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGV 191

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSF 231
            F        +A+ + +   HL     +E    AK+ +F    + L +   + +N DD F
Sbjct: 192 EF-------DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPF 244

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              LK+ +    +    ++G  + A F      +  +    +      +  V    IG  
Sbjct: 245 STYLKSVTPYESL----TYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRF 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              N++  +  V +  A ++T  K ++   P EGR
Sbjct: 301 NIANLMAAMLGVWVKGAPLETVTKVVADLEPVEGR 335


>gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella cf. novicida Fx1]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 20/223 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR    + AF A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 23  IESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSQEFED----QKRVF 78

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
            I  P         +D       +S+    R L   V  H             +A+ + +
Sbjct: 139 GI-YPNLRESTHTTLDILSLYQTISYYKNYRNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 239


>gi|222823307|ref|YP_002574880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter lari
           RM2100]
 gi|222538528|gb|ACM63629.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter lari
           RM2100]
          Length = 399

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + I+G+ GKTTT +M    L   K+  A +G+   +IG+PL  A+M +     I E    
Sbjct: 89  VWISGTNGKTTTTQMTHHLL---KRINAQMGA---NIGIPL--AQMDISAKLWILESSSF 140

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L    F T + +P I  +  I P HLS     E    AK  + E + +   + L
Sbjct: 141 SL----FYTKIAKPEIYALLPITPDHLSWHKSFENYEQAKLSVLERMNENDVVIL 191


>gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
 gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
          Length = 536

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 47/292 (16%)

Query: 3   PLWTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           P     DL +A    + G + G    G   GI++D+R +AP E F A+ G H  G  F  
Sbjct: 13  PRTALADLARAHGLRLTGPAAG---AGEALGITLDNRGLAPGEIFAALPGAHTHGARFAA 69

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK----------LAVAA----RL 104
            A   GA  V+ +    A+  +  IPV  V DV G+ +            AVAA    R 
Sbjct: 70  AAAAAGASAVLTDASGAAAAEAAGIPVL-VADVDGSGDGAGRAEFREIVAAVAADVYGRP 128

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----- 159
             +    A+TG+ GKTTT  +L   L  + +    IG+    IG  +  AR+        
Sbjct: 129 AERLRTFAVTGTNGKTTTSFLLAHLLGLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDL 188

Query: 160 -------VDFGIFELGM---SHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEI 206
                  V+ G+ +L M   SH  E+    H V P    +A  T +   HL     +E  
Sbjct: 189 HALLAHMVEAGVTDLVMEVSSHALEL----HRVDPVRFDLAAFTHLTQDHLDFHGDLEHY 244

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNA 256
            +AKA +F    +     ++ DD +   L   + A GI   T+ + G+   A
Sbjct: 245 YAAKASLFT-PARARRAVVSVDDEWGRRLAGDARAAGIDVATLATRGEHAAA 295


>gi|21230200|ref|NP_636117.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769810|ref|YP_244572.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993025|ref|YP_001905035.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|23821875|sp|Q8PCJ9|MURC_XANCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81304236|sp|Q4UQX1|MURC_XANC8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082517|sp|B0RVA4|MURC_XANCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21111738|gb|AAM40041.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575142|gb|AAY50552.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734785|emb|CAP52995.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 477

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 92/224 (41%), Gaps = 21/224 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             G H   N L    I   L    DT  +AL  F    G G+R+
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRF 324


>gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 155/375 (41%), Gaps = 44/375 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83
           + G+++DSR++ P E FFA+ G   DG  FI  A+  GA  V  +   TD         +
Sbjct: 22  ITGLAVDSRAVKPGELFFALAGAKTDGARFIAQAIAAGAVAVAGDHLPTD------EQGV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLT---IALSSIKKT 136
            +  VD+   AL   A     R  ATI A+TG+ GKT+    T+++     +A +SI  T
Sbjct: 76  ALVRVDNPRRALALAASKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRQGLASASI-GT 134

Query: 137 YACIGSYNNHIGV-----PLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              I    +  G      P+ L RM  ++   D     L  S  G  ++    VR     
Sbjct: 135 IGLIAPQRSVYGSLTTPDPIALHRMVDEIASEDVTHLALEASSHGLDQYRLDGVRIAAGG 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIK 245
            T ++  H+     +    +AK  +F  L        I  ++D S   +  A++  L + 
Sbjct: 195 FTNLSRDHMDYHPTVAHYLAAKLRLFRDLVAPSGAAVISADHDCSAEVVAAARARKLRLI 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+   G    A  +LR          + ++ QG+   ++   +G    +N L+  G+   
Sbjct: 255 TVGRNG-DPGAGIKLRSASIDGFAQRLILEHQGRMQNLLLPLVGEFQIENALVAAGLAIG 313

Query: 306 LTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +D D+  +AL+     +GR    G+R       G    +D  Y   P ++  A+  L 
Sbjct: 314 TGSDADSVFEALTQLEGAKGRLELVGER------NGAPIFVD--YAHKPDALAKALQAL- 364

Query: 362 QISPHGEGRRIAVLG 376
              P+ + + I V G
Sbjct: 365 --RPYAKRQLIVVFG 377


>gi|209519096|ref|ZP_03267902.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
 gi|209500468|gb|EEA00518.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G +  A  Q+R     + +  M    ++    S+++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAAEA--QVRAVNVEAREGRMHFTAMREDAPSLDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337
             +  G H  QN L  + I + L        +AL+ F+    R +RY            G
Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGQVAG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 331 SYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDV
Sbjct: 386 TVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDV 445

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 446 VITMGAGSIG 455


>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 24/227 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88
           +  D+R  AP  A F  + P     D  ++  Q    ++   TD++ S G +L  PV   
Sbjct: 30  VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLER 84

Query: 89  DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
               GA     +   AR  S A +IAITG+ GK+T    +T  +  + K      +   +
Sbjct: 85  ARQAGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG P L +       D  + EL    L     LT+ + P +A I  + P HL     +E 
Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              AK  I+ G +    +  N +D +   +  +S    IK I SFGK
Sbjct: 196 YTQAKQRIYSGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGK 236


>gi|170017481|ref|YP_001728400.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20]
 gi|229620040|sp|B1MZK4|MURC_LEUCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169804338|gb|ACA82956.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20]
          Length = 444

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 31/266 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T IA+ G+ GKT+T  +L   + +I  T   IG      GVP        +  F + 
Sbjct: 102 AQTTSIAVAGAHGKTSTTGLLAHVVKNIAPTSYLIGDGTGR-GVP--------NSQFFVV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   +  I ++  A ++    ++K   IF 
Sbjct: 153 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYEDINDVTRAFSDFANHVKK--DIFA 205

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             DD +  LL+ K+       +Y +G  S+  DF     ++ ++ S  +V  +G+S+ E 
Sbjct: 206 WGDDPYLRLLQPKA------DVYYYGTNSEQDDFVATNIRKSTQGSHFDVVFRGQSLGEF 259

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342
                G H   N L  + +  +   D+ + IK+  + +    +G + R +  Q    T+I
Sbjct: 260 SVPLFGQHSILNALSVIAVAYMEKMDL-SLIKSFLMTY----QGVKRRFSEKQIADITVI 314

Query: 343 DESYNANPASMKAAISVLSQISPHGE 368
           D+ Y  +P  + A +    Q  P+ +
Sbjct: 315 DD-YAHHPTEIDATLDAARQKYPNKQ 339


>gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
 gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
          Length = 444

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 57/241 (23%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----------ARLRSKATIIAITGSVG 118
           ++N D+V     +  P  G+ D +  + KLA            A   + ATII ITGS G
Sbjct: 60  ILNADLV-----MKSP--GIPDKVALVQKLAAKNIPVISEIEFASKYTDATIIGITGSNG 112

Query: 119 KTTTKEMLTIALS----------SIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFE 166
           KTTT  M+   L           +I  +YA + S NN     L ++   +D  VDF    
Sbjct: 113 KTTTTMMVNHILKEEGLHVGMAGNIGDSYAKMVSENNFDYYVLEISSFQLDGIVDF---- 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
                           +PHIA+IT I P HL  ++   +   ++K  I E   +   +  
Sbjct: 169 ----------------KPHIAIITNITPDHLDRYNYEFDNYITSKFRIAENQTEDDYLIY 212

Query: 226 NYDD----SFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQG 278
           + DD    S+ E    KS  +       F +    KN    +       E +   + L+G
Sbjct: 213 DADDEVLVSWLEKHPVKSKLIPFSLTKQFKEGVCLKNNKIHITTQNNTIEMATDNLALEG 272

Query: 279 K 279
           K
Sbjct: 273 K 273


>gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 460

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 64  GAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T    D V  + +  L+IP          L++  + ARL ++   IA+ G+ 
Sbjct: 64  GADIVVYSTALSRDNVERVAAEELNIPT---------LHRSQMLARLLNERKGIAVAGAH 114

Query: 118 GKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  M+ + +   ++  TY  IG    ++G      +     +F + E   S   + 
Sbjct: 115 GKTTTSSMIALVMERCNVDPTY-IIGGEITNLGTNAKAGKS----EFVVAEADES---DG 166

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD-SFFE 233
            FL +   P   ++T I   HL N+ G    + SA  +    +   G   +  DD +  E
Sbjct: 167 SFLQY--HPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIVCADDQNIRE 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292
           +L      L  + I ++G    AD+     +    +    +  +G ++  +   + G H 
Sbjct: 225 MLP----QLQTRVI-TYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIELSVPGKHN 279

Query: 293 AQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             N + T  ++S L A +  D     +  FH   G  +R++  L +G   LI + Y  +P
Sbjct: 280 MYNAMAT--VISCLEAGIPFDQIAATIVEFH---GAKRRFQV-LGEGNDILIIDDYAHHP 333

Query: 351 ASMKAAISVLSQISPHGEGRRI 372
             ++A IS     +    G+RI
Sbjct: 334 TEIEATIS-----AARATGKRI 350


>gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum]
          Length = 464

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ GS GKTTT  M+   L+       C+ G      G    + +        IF +  
Sbjct: 109 VAVAGSHGKTTTTSMIAHVLAHGGLDPTCVVGGRVPGFGGNARVGKK------NIF-IAE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  FL   + PH+AV+T +   HL  +   +++ +A       +   G      DD
Sbjct: 162 SDESDGSFLK--ISPHVAVVTNVDQEHLDYYQSFDQLKAAFERFLTSVPPEGLAVACLDD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI 288
                +    +A      +++G S  AD            +   V+L+GK +   V +  
Sbjct: 220 PELSNILPSLNA----PHWTYGFSPAADVVGSDVSAEGLSTSFSVRLRGKDIGTFVLNVP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L T+ +      + + A +AL  F    G G+R+     +G   ++D+ Y  
Sbjct: 276 GVHNVLNALATIAVAHHFGLEAECAREALERF---RGVGRRFTQVGEEGGIRIVDD-YGH 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAV 374
           +P  +   ++   Q  P    RR+ V
Sbjct: 332 HPTEIGVTLAAARQAYPD---RRLVV 354


>gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
 gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
          Length = 480

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 26/258 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +L    A   +  T+  IG   N  G    L           F + 
Sbjct: 121 IAVAGTHGKTTTTSLLASVFAAGGLDPTF-VIGGRLNAAGTNAQLGS-------SRFLIA 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++V+T I   H+S + G    +     E    L   G   L  
Sbjct: 173 EADESDASFL-HL-QPMVSVVTNIDADHMSTYGGDFNRLKKTFIEFLHNLPFYGLAVLCV 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     L  +   +G  T+ ++G +++AD +    +Q   +++  V +   + ++V  +
Sbjct: 231 DDPVVRELLPQ---VGRPTV-TYGFAEDADVRAINVRQEGMRTYFTVLRPDCEPLDVSVN 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +    D    +  LS F   +G G+R++      ++ G   L+
Sbjct: 287 MPGNHNVLNALATIAIATDEGIDDAAIVAGLSGF---QGVGRRFQVYGELPVDGGSVMLV 343

Query: 343 DESYNANPASMKAAISVL 360
           D+ Y  +P  + A I  +
Sbjct: 344 DD-YGHHPREVAAVIKAV 360


>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|118595640|sp|Q2IG29|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 462

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 51  YDGHDFI-LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           +D  DF     V    G+ + N ++ A+     +PV+G         ++ +AAR      
Sbjct: 63  HDAADFTGADLVVASPGVPLANPEIQAAR-RRGVPVWG---------EVELAARFLGGLP 112

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE 166
           I+ ITG+ GK+TT  +    L+  ++T+        ++G PL+   L+  P      + E
Sbjct: 113 IVGITGTNGKSTTTALTGALLARHRRTF-----VGGNLGTPLSELVLSGEPAAA--AVVE 165

Query: 167 LGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           L    L  I RF     R  +A +  + P HL  +  ++  A+AKA +F   E       
Sbjct: 166 LSSFQLEGIERF-----RARVAAVLNVTPDHLDRYPDVDAYAAAKARLFATQEPDDVAVA 220

Query: 226 NYDD 229
           N  D
Sbjct: 221 NARD 224


>gi|39936591|ref|NP_948867.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           CGA009]
 gi|48428302|sp|P61682|MURC_RHOPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39650447|emb|CAE28970.1| UDP-N-acetylmuramate-alanine ligase [Rhodopseudomonas palustris
           CGA009]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 132/340 (38%), Gaps = 48/340 (14%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      L       IPV    ++L  L +L          + +AI G+
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L +       I G   N  G   T AR+    D+ + E   S   + 
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVINGGIINAYG---TNARLGGG-DWMVVEADES---DG 168

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            FL   +   +A++T + P HL +F   + +  A     E +   G   +  D    + L
Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288
             K   +  + I ++G++  AD +L         S  +V  + +     H          
Sbjct: 227 VGK---IEDRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAHEIADLKLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  
Sbjct: 284 GRHNALNATAAIAVAHELGLSDDTIRKALAAF---GGVRRRFTKTGEWNGVTIIDD-YGH 339

Query: 349 NPASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379
           +P  + A +          V++ + PH   R  ++  + C
Sbjct: 340 HPVEIAAVLKAARQSTAGKVIAVVQPHRFSRLQSLFEEFC 379


>gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus CB15]
 gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus NA1000]
 gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus CB15]
 gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus NA1000]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           AA    +  IIAITG+ GK+TT  ++    +S  +     G  N  +GV L L  M    
Sbjct: 109 AAPAHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRVGG--NIGLGV-LGLEDMHGGA 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + EL    L     LT  ++P   V+  I+P HL    G++   +AK  IF    K 
Sbjct: 166 VY-VLELSSYQLD----LTSSLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQGKG 220

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            T  +  DD++ + +  +  A   +TI+     K
Sbjct: 221 DTAIIGVDDAWCQQICTEITAANRRTIWPISAGK 254


>gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
 gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
          Length = 505

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           ++ I++DSR +     F A+ G   DG  +I  A++ GA  ++   D +A+ G +++   
Sbjct: 32  IDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIANEGDIALKDG 91

Query: 85  --VFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEML 126
             +  + D+   L+  A+A R       K  + A+TG+ GKTT  ++L
Sbjct: 92  VYIIYLQDLNHKLS--AIAGRFFDHPDQKLALYAVTGTNGKTTISQLL 137


>gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
 gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
          Length = 463

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 112/277 (40%), Gaps = 31/277 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           SK  I+A+TGS GK+T   M+        K  A  G    +IGVP L L       D  I
Sbjct: 117 SKLPIVAVTGSNGKSTVTRMVEFVAKQCGKNVAAAG----NIGVPVLDLLLQEQHPDAVI 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +  L    +   A +  I+  H+  +  ++E   AK  IF    KT  + 
Sbjct: 173 LELSSFQLESVSSL----KLKAAALMNISADHMDRYCTLDEYVKAKQRIFTH-AKTWILN 227

Query: 225 LNYDDSFFELLKAKSHALGIKT-IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               D++   +  K    G  +    FG  S N D   R     +      V L+   ++
Sbjct: 228 RQQQDTWPHPVTGKLMTFGNDSHPKHFGLLSGNID---RVSGPVAVTFDGSVVLRADQLQ 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFF 339
           +     G H   N+   L +   +  D++ A++A+     KE +G  +RC L   N+G  
Sbjct: 285 LQ----GIHNLVNVQAALALCQAIDIDIEAAVRAV-----KEFKGLPHRCELVSDNEGVL 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +++S   N  +  AA+  L    P   GR + + G
Sbjct: 336 -WVNDSKATNIGATAAAVEGL---RPMINGRLLLIAG 368


>gi|260583459|ref|ZP_05851207.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
 gi|260158085|gb|EEW93153.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
          Length = 443

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 58/301 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AITGS GKT+T  +L   LS+++ T   IG    H GV  +        ++ + E    
Sbjct: 107 VAITGSHGKTSTTGLLAHVLSAMEPTSYLIGDGTGH-GVEGS--------EYFVLEA--- 154

Query: 171 HLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +  H +  +P  A++T I   H   ++ I+++ SA  E F    K G I    D
Sbjct: 155 ----CEYKRHFMAYKPDYAIMTNIDFDHPDYYTDIDDVQSA-FESFGRQVKKGIIACGDD 209

Query: 229 DSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                   A+ H L + T I  +G +K+ D      ++ +E S  +V + GK        
Sbjct: 210 --------ARLHELDVTTPITYYGIAKSNDVVAENIEKDTEGSHFDVYIYGK-------- 253

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE--------GRGKRYRCALNQGFF 339
                 +  + T G  +IL A        L+ F+P+E        G  KR          
Sbjct: 254 ---FYGKFDIPTFGTHNILNALAIITFYYLNNFNPEELASNLKTFGGVKRRFSEKKIKEI 310

Query: 340 TLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
           T+ID+ Y  +P+ ++A +    Q            PH   R IA+L +  +   L+   +
Sbjct: 311 TVIDD-YAHHPSEIRATLDAARQKYPTKKIVAVFQPHTFTRTIALLDEFAKALSLADDVY 369

Query: 390 I 390
           +
Sbjct: 370 L 370


>gi|295111742|emb|CBL28492.1| UDP-N-acetylmuramate--alanine ligase [Synergistetes bacterium SGP1]
          Length = 497

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 112/274 (40%), Gaps = 29/274 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A+ + + G+ GKTTT  ML++ LS               + V   +  M  +   G   L
Sbjct: 110 ASGVGVAGTHGKTTTSSMLSLVLSRA--------GLAPTLYVGARMRDMGTNALLGEGRL 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            ++ L E      L RP ++++T +   H+ +F   E++  A A    G ++   + +  
Sbjct: 162 FLAELDESDGSFELFRPAVSIVTNVDWDHVDHFPSFEDVILAFARFASGRKEGAPLIVCA 221

Query: 228 DDS----FFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +D       E L+      G    Y +G+S +   F L    + +      V  +GK + 
Sbjct: 222 EDEGAQRMLEGLR------GPLLRYGWGRSWDWGAFDL--VPRATGGISCSVCRKGKVLG 273

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +   + G H   N L  L    +L    + A   L  FH   G  +R +     G  T+
Sbjct: 274 PLELSVSGEHNVLNALAALAAADVLGVPFEKAAATLKDFH---GAARRLQTKGTLGGVTV 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           ID+ Y  +P  + A +S L  I P+   RRI +L
Sbjct: 331 IDD-YAHHPTEIAATLSALRGIYPN---RRILLL 360


>gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 515

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 38/327 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G + D+  + P   F A+ G    G   +  A+ +GA  VVV    V    +  + V  V
Sbjct: 27  GTAFDADRVVPGSLFIAVPGHLEGGPGAVAPALARGAAAVVVEDGCVVPTAAGDVCVVQV 86

Query: 89  DDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGS 142
            D   A    AVAA         +  ++AITG+ GKT+   M+  AL   +   A  IG+
Sbjct: 87  PD---ARRTAAVAASRYFGEPGRRMDMVAITGTNGKTSVSYMVESALRISEGARAGVIGT 143

Query: 143 YNNHIG-----VPLTLARMPVDVDF------------GIFELGMSHLGEIRFLTHLVRP- 184
             + IG     +P ++   P   D             G   L  + +G    LTH +   
Sbjct: 144 AGSRIGDELIPMPRSVLSTPESPDLQYLLGYMRDRGVGTVVLEATSMG---LLTHRIDRT 200

Query: 185 --HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V T ++  HL +   +E    AK  +F+GL +   +  N DD     + A+  A+
Sbjct: 201 FIDVGVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCEHAVV--NADDP----VGARIGAM 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++     ADF+       +  +   +  QG+         G     N L  +  
Sbjct: 255 MPGAVTTYALDAEADFRATDLTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAA 314

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKR 329
              L  D+   + AL       GR +R
Sbjct: 315 CHTLGHDLAGLVSALGRMPQIPGRFER 341


>gi|323466063|gb|ADX69750.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           H10]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG      GVP        D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F   ++  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G +   DFQ  + K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATEIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D     L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           83/13]
 gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
 gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGVDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWSQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
 gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
          Length = 482

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 146/346 (42%), Gaps = 36/346 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +L    A   +  T+  IG   N  G   T A+M        + + 
Sbjct: 121 IAVAGTHGKTTTTSLLASIFAEGELDPTF-VIGGRLNSAG---TNAKMGT----SRYLVA 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +A++T I   H+  +      +     E    L   G   +  
Sbjct: 173 EADESDASFL-HL-QPMVAIVTNIDADHMETYENDFSRLKKTFVEFLHNLPFYGLAVMCV 230

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QG-KSMEVV 284
           DD    E+L   S     + + ++G S++AD++    +Q    +   V+  +G   ++V 
Sbjct: 231 DDPVVCEILPEIS-----RPVLTYGVSEDADYRAENIRQEGMCTRFTVKRPEGFADLDVS 285

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFT 340
            +  G+H   N L T+ + S      +    AL  F   EG G+R++     ++  G   
Sbjct: 286 LNMPGHHNMLNALATIAVASDEGISDEAICSALEKF---EGVGRRFQVLGDVSVTDGTAM 342

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  + A +  + +  P    +R+ ++         ++  + D  EVLS  +
Sbjct: 343 LVDD-YGHHPREVNAVVKAIREGWPE---KRLVMIYQPHRYSR-TRDLYEDFVEVLSEVD 397

Query: 401 I---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +     V+ +G   +A  D+      +     +D +F+  + S+ D
Sbjct: 398 VLLLLEVYAAGEEPVAGADSRSLCRSIRQRGRLDPVFVSDKDSVAD 443


>gi|296101254|ref|YP_003611400.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055713|gb|ADF60451.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 491

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+    SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S++AD ++ ++KQ   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVEEYKQIGAQGHFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
           Q K  + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+     
Sbjct: 277 QDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRFDFLGE 333

Query: 333 ----ALN--QGFFTLIDESYNANPASMKAAIS 358
               A+N   G   L+D+ Y  +P  + A I 
Sbjct: 334 FPLDAVNGKPGTAMLVDD-YGHHPTEVDATIK 364


>gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
 gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
          Length = 505

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 162/432 (37%), Gaps = 62/432 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
             + IS       P + F      H D       A+++GA  ++    +      L+IP 
Sbjct: 32  VCSAISTTEVDCEPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQLL-----PLAIPQ 86

Query: 86  FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
             V D   AL  +  A+     +K   I ITGS GKT T  ++   L +  +    I S 
Sbjct: 87  AIVPDAREALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSL 146

Query: 143 -YNNHI-------GVPLT------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            Y++ I         P +      ++RM V        + MS  G  +  T      IAV
Sbjct: 147 GYSDSIEQVSTKCATPRSPKLAWWMSRM-VKNKAAAAVIEMSSQGLSQRRTAGTSLDIAV 205

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTI 247
           +T +   H S         +AK  IF  L+  G   +N DD    +LL+    +L   T+
Sbjct: 206 LTNLRNVHTSEHGSAANYLAAKKRIFSHLKPGGLAIINADDHRSRQLLE----SLACPTL 261

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G    AD   R   +   +    +    ++++V    IG     N L  + +   L 
Sbjct: 262 -TVGLHAEADISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLG 320

Query: 308 ADVDTAIKALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363
            ++ T ++ +    + P    G+  R  + Q F  ++D +  + P ++  A+    ++  
Sbjct: 321 IELSTIVRGIENVTYLP----GRMQRLEVGQEFGVIVDAA--STPDTLAIALKTARRVTK 374

Query: 364 -------SPHGEGRRIA--VLGDMCEMGELSQSFHIDLAEVL-------SLYNISHVWLS 407
                  S  GE  R A  +L  + E G        DLA +        S   I+H  L 
Sbjct: 375 GRVLLVFSASGEKNRDARPMLARVAEQGA-------DLAVITSGNPRRESPREITHQLLD 427

Query: 408 GFHVLALKDALP 419
           GFH  A    +P
Sbjct: 428 GFHRPAKAHFIP 439


>gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 157/385 (40%), Gaps = 65/385 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++GS GKTTT  ++++  + +         Y+     P  L    VDV  G   +G S
Sbjct: 112 IAVSGSHGKTTTTSLISVIFNGM--------GYD-----PTVLVGGEVDVIGGNVRVGNS 158

Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                 F+T             P+IAVI  +   HL  F  I+ I  +  +    +   G
Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQ 277
            +    DD+    +    + L  K I ++G  K++D++ +      K C   +  +V  +
Sbjct: 215 YVVACKDDANTMYV---VNGLN-KNIVTYGIYKDSDWKAKNIGFDDKGC---AIFDVYYK 267

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + M      I G H   N L  L +  ++  D+  A   L+ F   +G  +R+      
Sbjct: 268 EEYMGNFKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIV 324

Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              T++D+ Y  +PA +KA +          ++    PH   R  A+L       E ++S
Sbjct: 325 DGITIVDD-YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKALL------NEFAES 377

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443
           F  D A+ + + +I         +++ KD +     +   V Y +  D +  ++  +   
Sbjct: 378 F--DNADKIIIADIYAAREKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKA 435

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
           GD+V+   + +   Y +  + L+++
Sbjct: 436 GDLVLTIGAGN--IYEVGEMFLKDY 458


>gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans
           PsJN]
 gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 147/368 (39%), Gaps = 42/368 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVH 285
           DD +  E+L   S     K I  +G + +A  +    K    +  +  ++     +++V 
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDAQVRAVNVKAHDGKMHFTAMREDAAPIDIVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFF 339
           +  G H  QN L  + I + L        +AL+ F+    R +RY            G +
Sbjct: 273 NLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSEGKASGAY 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS  
Sbjct: 333 TLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLSTV 387

Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+
Sbjct: 388 DALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAVVRDGDVVI 447

Query: 449 VKSSNSCG 456
              + S G
Sbjct: 448 TMGAGSIG 455


>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254766033|sp|C1F460|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 461

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V ++T  +  +    +P+ G         ++ +AAR   K   +AITGS GKTTT  +  
Sbjct: 78  VPLDTPELVQVRKFGLPIIG---------EVELAARFL-KGKTLAITGSNGKTTTTSLCG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L    +     G    +IG+P + L     D  + + E+    L      T   RP I
Sbjct: 128 AILERAHQHVQVGG----NIGLPVIALVDDSRDDGWSVLEISSFQLET----TERFRPGI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           AVI  I P HL      E   +AK  IF        + LN
Sbjct: 180 AVILNITPDHLDRHGSFENYVAAKERIFAAQTHDDALILN 219


>gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 514

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 148/376 (39%), Gaps = 43/376 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  + P + +  ++G    G  F   A   GA  V+ + D +A      +PV  
Sbjct: 40  TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDGLAEARDSGLPVIL 99

Query: 88  VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL  +A  V     + AT+  +TG+ GKT+   +L   L  +        +   
Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159

Query: 146 HIGVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVIT 190
            IG     +R+  P   +     L      E+R +T  V                +A   
Sbjct: 160 RIGEESITSRLTTPEASELHAL-LARMREAEVRAVTIEVSAQALTRHRVDGLVFDVAAFI 218

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++  HL +++  EE   AKA  F+    + G + L   D+ +     +   + + TI S
Sbjct: 219 NLSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSL---DTVWGQRIVEQSRIPMTTI-S 274

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSIL 306
                 AD+++   +Q  + +    +L+G    V+   +   G+ MA N    L IV ++
Sbjct: 275 AQPGIEADWRVTVLEQTPDSTGF--RLEGPDNRVLVSSVPVPGWFMAAN--AGLAIVMLV 330

Query: 307 TADVDTAIKALSVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  D  + A++    ++G       G+  R + + G    +D  Y   P + +  +  L
Sbjct: 331 ESGYD--LDAVAHVLDRDGGIQAYIPGRAERVSGDTGPLFFVD--YGHTPDAFEQTLQAL 386

Query: 361 SQISPHGEGRRIAVLG 376
              +P   G+ + V G
Sbjct: 387 RPFTP---GKLVMVFG 399


>gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 497

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +R  IA +T I   HL      E   ++K  +F+ L+K G   +N  + + +LL  K   
Sbjct: 195 IRFDIAGLTNITRDHLDYHPTFEHYVNSKLHLFDLLKKDGIAVIN--EEYVQLLNGKK-- 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  + +FG ++NA +++         +   ++    + +V    IG + A N+ + L 
Sbjct: 251 --VPNLVTFGVNENAQYKISDITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLA 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  +  ++D  I  +S F   +GR +    A   G   +ID  +  +P +++  IS   
Sbjct: 309 GLVEIGYEIDEVISYISSFRGVDGRFEPIPEARRLGIEVVID--FAHSPDALEKVISSAR 366

Query: 362 QISPHGEGRRIAVLG 376
           +++   +GR I V G
Sbjct: 367 KLA---KGRVIVVYG 378


>gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
 gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 104/262 (39%), Gaps = 29/262 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+A  I ITGS GKTTT  ++   L   +K     G    +IG V   +A+     +  +
Sbjct: 109 SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAG----NIGTVACEVAQKATKDNVIV 164

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I       RP I+++  +  AHL      EE   AKA +F          
Sbjct: 165 TELSSFQLMGIEKF----RPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSEDFAV 220

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280
           +N DD    ++KA +     K  +S          ++     +K     S  +V L GK 
Sbjct: 221 INADDEL--VMKASADVKATKVPFSVTAQTTEGAYIKNETIFFKDEEVMSLKDVVLPGK- 277

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                     H  +N+L  + +V +     +   + L+ F   + R  +Y   +N+  F 
Sbjct: 278 ----------HNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHRV-QYVTTINKRKF- 325

Query: 341 LIDESYNANPASMKAAISVLSQ 362
             ++S   N  + K A+S  SQ
Sbjct: 326 -YNDSKATNMLATKVALSAFSQ 346


>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 514

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR + P   F AIKG H DGH +I  A+++GA  VV +    A     +IP  
Sbjct: 23  ISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGAVAVVYDDPHQAP--PATIPSA 80

Query: 87  GVDDVLGALNKLAVA 101
            V D   AL+ +A A
Sbjct: 81  LVADAKVALSPIAAA 95


>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
 gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 36/304 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           A +IAITGS  K+T   ++     +        G    +IG P L +   P + D  + E
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAEAAGINVGVCG----NIGTPVLEMLEQP-EKDLYVIE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ +R  +A +  I+P H+  +  +++   AK  IF G +    + +N
Sbjct: 164 LSSFQLE----TTNDLRAEVATVLNISPDHMDRYDSMQDYYKAKHRIFRGAK---NVVVN 216

Query: 227 YDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DDS    L A     G+K T +  GK    D +L    +     W+ + L         
Sbjct: 217 RDDS----LTAPLLPQGVKQTAFHLGKP---DLKLFGLIEDQGDVWLALGLDKLIAASEL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342
              G H   N L  L +       +D  + AL  F      G R+RC   A +QG  T  
Sbjct: 270 KMRGRHNLANALAALALGQAAGLPMDAMLNALRGFT-----GLRHRCEWVAEHQG-VTYF 323

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AA++ L        G  +   GD    G+ ++   ++LAE L  Y  +
Sbjct: 324 NDSKGTNVGATVAALNGLGGTLSEENGIVLIAGGD----GKGAE--FVELAEPLRNYGRA 377

Query: 403 HVWL 406
            V++
Sbjct: 378 LVYI 381


>gi|319401048|gb|EFV89267.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis
           FRI909]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 128/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  D   +  +   + +  +V +QG+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIQGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +  E   LS++  + L
Sbjct: 311 DD-YAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
 gi|118595693|sp|Q1GIV4|MURD_SILST RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|99036800|gb|ABF63412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  +L   L  + +     G    +IG  +     PVD    + EL  
Sbjct: 122 VIAVTGSNGKSTTVALLHHILEHVGRNSQMAG----NIGRGVLDIDPPVDGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T + P HL   +G+    +AK  +F EG      I ++ D
Sbjct: 178 YQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGVDED 233

Query: 229 DSFF 232
           +  F
Sbjct: 234 EGLF 237


>gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
 gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
          Length = 488

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 25/226 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR +     F A  G H DG  +I  AVQ GA  VV   +         +    V 
Sbjct: 14  ITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQVSNLAVQ 73

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-H 146
           D+   +  +A        SK T+I +TG+ GKT+  + +   L+ + K  A +G+  N  
Sbjct: 74  DLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKTAVLGTIGNGF 133

Query: 147 IGVPLTLARMPVDV---------------DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +G     A    D                D    E+    L + R   + V   +AV+T 
Sbjct: 134 LGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRV--NGVAFDVAVLTN 191

Query: 192 IAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELL 235
           ++  HL     +E  A+AK ++F  EGL    T  +N DD+F + L
Sbjct: 192 LSRDHLDYHETMEAYAAAKQKLFAWEGLI---TAIVNTDDAFGKSL 234


>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
 gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
          Length = 456

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 33/217 (15%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP D  F + EL    L  I+      RP  A++  I P HL+    +E   +AK  IFE
Sbjct: 154 MPAD-GFLVAELSSYQLETIKHF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFE 208

Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIK--------TIYSFGKSKNADFQLRKWKQ 265
               T  + LN DD     +  +A SH L I           Y+ GK   A   + K+  
Sbjct: 209 NQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGKCYIAKDGVAKFVI 268

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E                 H  G H  +N+L  + +   L   V+T  + +S FH  E 
Sbjct: 269 ADEDI---------------HIPGSHNIENILTVIALSYALGVPVETIHRIISEFHGVEH 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           R +R +      F+   ++S   N  S+  A+    Q
Sbjct: 314 RLERVKTIDGITFY---NDSKATNVDSVVKALESFDQ 347


>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
 gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 158/401 (39%), Gaps = 74/401 (18%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           ++ +DM+     L++    +  VL A    +  + +  R  +K  I+ ITGS GK+T   
Sbjct: 63  LLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKP-IVGITGSNGKST--- 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           + T+     K     +G   N IG+P  L+ +  D +  + EL    L      T+ ++ 
Sbjct: 119 VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSSFQLET----TYSLKA 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A I  +   H+  +  +E+   AK  I+    K G   LN +D               
Sbjct: 173 AAATILNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNEDRL------------- 216

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQ 294
               +FG+++N       + + S   W++ +  GK   +V             +G H   
Sbjct: 217 ----TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVILPCEEATLVGRHNYM 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L    +   +  ++D+   AL  F   +G   R++ A        I++S   N  S  
Sbjct: 272 NILAATALAQAIGINLDSIRAALRHF---KGLDHRFQLAHQANGIRWINDSKATNVGSTV 328

Query: 355 AAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AA++ L     + EG+   +LG      +  E+ EL    HI    +   +      L+ 
Sbjct: 329 AALAGL-----YIEGKLHLLLGGDGKGANFSELAELINQPHI----ICYCFGRDGALLAK 379

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 380 F-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Legionella longbeachae NSW150]
          Length = 483

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 146/381 (38%), Gaps = 54/381 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSI 83
            + G+  DSR I P + F A  G   DG  FI +AV  GA  V  +     +  +   S+
Sbjct: 19  LITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAVAYDPADFPLNCVLPESV 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V ++   L  +A            I  +TG+ GKTT    L  A   + +  A IG
Sbjct: 79  PCIPVPELSTQLPNIAKQFYDNPACFLNITGVTGTNGKTTIAYQLAQAHHLLGQKAAYIG 138

Query: 142 S-----------YNNHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +            +N     L L ++       D+     E+    L + R     +  +
Sbjct: 139 TIGQGNVNELRLVDNTTPDSLCLQKLLHQYKSQDMRQVCMEVSSHALAQHR--VDALEFN 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E  A AK+ +F   E      +N DD++ +++ A       K
Sbjct: 197 QAIFTNLTLDHLDYHHSMENYARAKSLLF-ARESLEWAIINQDDAYHKIMAAAIKPQVKK 255

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-------NMLM 298
             Y  G  ++ D + + W          + + G  +E VH   G H  +       N+  
Sbjct: 256 LTY--GIHQDCDVRAKNW---------SMDIYGTEIE-VHSPWGKHHIKIKSLGQFNIYN 303

Query: 299 TLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L I S L A     +  +  ++      GR +     +    + L+D  Y   P +++ 
Sbjct: 304 SLAIFSSLLAANYIPEQVVDVMAQLKAAPGRME----IVAHSPYVLVD--YAHTPDALEN 357

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A+  L+Q+    +GR   V G
Sbjct: 358 ALMTLNQLK---KGRLWVVFG 375


>gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 495

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 153/380 (40%), Gaps = 52/380 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++AP +AF AI G    G  F+  A   GA  V+       +   L +PV 
Sbjct: 22  VSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEP---PAPDGLPVPVD 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  VLG   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 79  AI-AVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137

Query: 142 S-----YNNHIG----VPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPH 185
           +     Y   +      PL L   A +    D G   + M   SH L + R     V   
Sbjct: 138 TLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGR--VDAVHFD 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           +AV T +   HL     + +  +AKA++F   GL+      +N DD F   L A    + 
Sbjct: 196 VAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAA---VVNLDDGFGRTLFASRDPV- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              + + G S  A        Q  +         + +QG+   V    +G     N+L  
Sbjct: 252 ---LRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308

Query: 300 LG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            G    + I  A + T +  L   H     G+  R     G   L+   Y   P +++ A
Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIH-----GRMNRLGGAHG-APLVVVDYAHTPDALEQA 362

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +S L     H + R I V G
Sbjct: 363 LSSLRS---HAQDRLICVFG 379


>gi|254786996|ref|YP_003074425.1| UDP-N-acetylmuramate--L-alanine ligase [Teredinibacter turnerae
           T7901]
 gi|259509783|sp|C5BP33|MURC_TERTT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237685124|gb|ACR12388.1| UDP-N-acetylmuramate--alanine ligase [Teredinibacter turnerae
           T7901]
          Length = 473

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 151/365 (41%), Gaps = 40/365 (10%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ++ +I     K     IG   N  G    L           + +  
Sbjct: 118 IAVAGTHGKTTTTSLIASIFAEGDKDPTFVIGGLLNSAGTNAALGA-------SRYLVAE 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P +AV+T I   H+  + G    +     E    L   G   +  D
Sbjct: 171 ADESDASFL-HL-QPMVAVVTNIDADHMDTYGGDFGTLKKTFVEFLHNLPFYGVAVMCGD 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG 287
           D     L         +T+ ++G S++ DF+    KQ S +   +++  +G+ +++  + 
Sbjct: 229 DPVITSLIPDI----ARTVITYGFSEDCDFKAYDVKQESGKQRFKIKRPEGEPLDIYLNM 284

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
            G H   N    + + +    D D AI + L+ F    G G+R++      L QG   ++
Sbjct: 285 PGQHNVLNATAAVAVATDEGID-DIAIQQGLAQFM---GVGRRFQIYGDYPLPQGGSVML 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P  + A I  +    P    RR+ ++         ++  + D  EVLS  +  
Sbjct: 341 VDDYGHHPREVAATIRAVRDSWPD---RRLFMVYQPHRYTR-TRDLYEDFVEVLSSVDQL 396

Query: 401 -ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  V+ +G   +   D   L R+I         + E ++G+   ++  +  GD+++ + 
Sbjct: 397 VLLEVYAAGEEPIPGADGRHLSRTIRTRGLVDPIFVEGIEGVPAVVKDLVKPGDIIITQG 456

Query: 452 SNSCG 456
           + + G
Sbjct: 457 AGNVG 461


>gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
 gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
          Length = 444

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 21/208 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPV--F 86
           ++ D+R  AP  A F  + P  D   ++ H  +   G +   TD++AS G SL  P+  +
Sbjct: 30  VAFDTRPQAPNLAEFTAEFP--DVTVYVQHVPEDVLGQL---TDIIASPGLSLDTPLLQY 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +   +     +   AR    A +IAITG+ GK+T   ++     +     A  G    +
Sbjct: 85  ALHAGISVYGDIECLAR-EIHAPVIAITGTNGKSTVTTLVGEMAKAAGYNVAVAG----N 139

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG+P L +       D  + EL    L     LT  + P +A I  ++P HL     ++ 
Sbjct: 140 IGMPVLDMLEDEHQYDLWVLELSSFQLD----LTSSLAPVVATILNVSPDHLDRHHSMDA 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              AK  ++   +    +  N DD++ E
Sbjct: 196 YIRAKQRVYHHAQ---VVLFNRDDAYTE 220


>gi|110833457|ref|YP_692316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
 gi|118595639|sp|Q0VS04|MURD_ALCBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110646568|emb|CAL16044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
          Length = 441

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 41/315 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V+  +  S  +++  V    +V+G +   A AA       ++AITGS  K+T    +T
Sbjct: 70  LIVSPGVAVSTPAIAEQVVDGKEVIGDIELFARAA----SEPLVAITGSNAKST----VT 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L  +            ++GVP  L  +       + EL    L      T+ +   +A
Sbjct: 122 TLLGQVADACGMNPGIGGNLGVP-ALELLDDQARLYVLELSSFQLET----TYSLSAEVA 176

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            +  ++  HL  ++   +  +AK  +++G +       N DD     L  +  A   + I
Sbjct: 177 TVLNVSQDHLDRYASFADYLAAKQRVYDGCQ---VAVWNRDD-----LATRPPATVARQI 228

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSI 305
            SFG    AD++L      SE    ++  +G+ +  +      G+H A N+L  L I   
Sbjct: 229 -SFGAHPEADYRLD-----SENG--QLLCRGEPLLSLSELALTGHHNAMNILSVLAISDA 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQI 363
           L+ + D A+  +  F      G  +RC L    G     ++S   N   + A ++ L+ I
Sbjct: 281 LSLNRDKALATVKTFT-----GLPHRCQLVAESGGVRWFNDSKATN---VGATLAALTGI 332

Query: 364 SPHGEGRRIAVLGDM 378
               EG+ I V G +
Sbjct: 333 GESIEGKVILVAGGL 347


>gi|317121201|ref|YP_004101204.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591181|gb|ADU50477.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 564

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 26/139 (18%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-------NHIGVPL--TLAR 155
           R +A +I +TGS GKTTT  ++      +++  A  G           +IG PL   + R
Sbjct: 191 RCRAKVIGVTGSAGKTTTTSLIG---EGLRRATAPGGPLEGRPVYVGGNIGRPLIEEVDR 247

Query: 156 MPVD----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +P +    ++   F+L + H            P +AV   + P HL     +E  A+AK+
Sbjct: 248 IPPEALVVLELSSFQLELCHRA----------PQVAVYLNLRPNHLDVHGSMEAYAAAKS 297

Query: 212 EIFEGLEKTGTIFLNYDDS 230
            I       G   LN DD 
Sbjct: 298 RIVALQAAEGWAVLNGDDP 316


>gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
 gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 27/141 (19%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   +   ++A+TGS GK+TT  ++   L               H+G P TLA    ++ 
Sbjct: 114 ANFDTAPRVVAVTGSNGKSTTSALIHHIL--------------EHVGRPATLAG---NIG 156

Query: 162 FGIFELGMSHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            G+ ++   H GE+       + T L R   P +AV T ++  HL    G+    +AK  
Sbjct: 157 RGVLDIDPPHDGEVVVLELSSYQTDLARSLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRR 216

Query: 213 IF-EGLEKTGTIFLNYDDSFF 232
           +F EG      + ++ D+  F
Sbjct: 217 LFAEGGPDRAIVGVDEDEGLF 237


>gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
 gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
          Length = 473

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 136/358 (37%), Gaps = 45/358 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           + + G+ GKTTT  M+   L +  +  T    G  NN+     + AR P   D+ + E  
Sbjct: 120 VCVAGTHGKTTTTSMIGSLLDAGDLDPTVINGGIINNY----ASNAR-PGTGDWMVVEAD 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    IR         + VIT I P HL ++     + +A  +    L   G   +  D
Sbjct: 175 ESDGTFIRLPAT-----VGVITNIDPEHLDHYGDFAGVRAAFDQFVANLPFYGFAAVCLD 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--------VQLQGKS 280
               + L  +   +  + + ++G +  AD +        E S  +        V+L+G +
Sbjct: 230 HPEVQALVGR---VTDRRLITYGFNPQADVRAENLDPTEEGSRFDIIFRKDDIVRLEGIT 286

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFF 339
           + +     G H   N L    +   +    D      + F     RG R R   + +   
Sbjct: 287 LPMP----GRHNVLNALAAAIVAREMGVPEDAIRDGFARF-----RGVRRRFTEVGKYRG 337

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD--MCEMGELSQSF-----HIDL 392
             I + Y  +P  + A +S    ++    GR IAV+       + +L  +F       DL
Sbjct: 338 ARIIDDYGHHPVEIAATLSAARTVA---RGRVIAVMQPHRYTRLQQLFDAFCGCFNDADL 394

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
             V  +Y    + + G    AL D + R  H  V   E   GL   ++  L DGDVV+
Sbjct: 395 VMVGDVYPAGEMPIEGMDKRALADGIARHGHRGVEVIEAWGGLSQRLRDELQDGDVVI 452


>gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 145/361 (40%), Gaps = 53/361 (14%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI+G+ GKTT   ML+ I L+                  P  L    +D   G F +G 
Sbjct: 114 VAISGTHGKTTCTSMLSHITLADNLD--------------PTILVGGELDAIGGNFRIGN 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      FLT             P++ +I  I   HL  +  I+EIA    +    + + 
Sbjct: 160 SEY----FLTEACEYKRSFLKFPPYVGIILNIDSDHLDYYKDIDEIADTFLQFSRLIPED 215

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGK 279
           G +    DD     + ++++        S+G S NA+   +      +  +  +V   G 
Sbjct: 216 GYLVGYADDQRVNEILSETNC----NTLSYGFSDNANLTAKNIHFNTNGCATFDVYKDGN 271

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           ++  +  +  G H   N L ++ +  I     D  I+ LS     +G  KR+        
Sbjct: 272 NLFNITLNVPGKHNILNALASICVSLIFNISNDCIIEGLS---NCKGAHKRFEYKGKLNG 328

Query: 339 FTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  +KA +S   Q++         PH   R  A+  +  E    + +  
Sbjct: 329 VTVIDD-YAHHPTEIKATLSTAKQMNHNKTYCIFQPHTYTRTKALFDEFTEC--FNDADE 385

Query: 390 IDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + L ++ +    +   +S   +  AL++   + I+VH   + D    +++S LV GD+++
Sbjct: 386 LILMDIYAAREKNTGLVSSDELGDALRNKGLKCINVH---SHDEALNYVKSKLVSGDLLL 442

Query: 449 V 449
            
Sbjct: 443 T 443


>gi|325294673|ref|YP_004281187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065121|gb|ADY73128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 412

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 21/172 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           K  II+ITG+ GK+TT  ++   L     KT+  IG    + G+P +  A    D    +
Sbjct: 79  KGKIISITGTNGKSTTTALIYQVLKEAGYKTF--IGG---NFGIPFSSFAEETTDDSITV 133

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    + +++      R  I++I  I P H++ +   EE   AK ++   L  +    
Sbjct: 134 LELSSFQIEDLKDF----RSSISIILNITPDHMNRYKSFEEYVKAKLKL---LGHSEFCI 186

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           LN DD            L  +  + F + + AD    K K   +   +EV+L
Sbjct: 187 LNQDDPVL-------RNLNRENFFFFSRKRKADAFFEKGKIFCKDFKIEVEL 231


>gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 525

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 20/155 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           L+T  D L A  G ++ +   G       V  ++ DSR   P + F A  G    G  F 
Sbjct: 10  LFTQLDALAAAVGATVDVGDGGPEARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFA 69

Query: 58  LHAVQKGAGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSK 107
             AV+ GA  V+ +      +   +G  S+PV  VDD   A+ K A       AA L S 
Sbjct: 70  ASAVEAGANAVLTDAQGRDILRRDLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDS- 128

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
               A+TG+ GKTTT  M+   L ++ +    IG+
Sbjct: 129 ---YAVTGTNGKTTTAYMVESILGALGRKPGLIGT 160


>gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
 gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 50/382 (13%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      + +     IPV    ++LG L       R R     IA+ G+
Sbjct: 80  KGANVIVVSTAIDKENPEIKTAIENRIPVVRRAEMLGEL------MRYRHG---IAVAGT 130

Query: 117 VGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ++T  L+  ++  TY  IG   N  G+   L           + +  +   +
Sbjct: 131 HGKTTTTSLITCMLAEENMDPTY-VIGGLLNRTGMNAALG-------ASRYIVAEADESD 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             FL HL  P  AV+T I   H+  + G  + +     +  + L   G   +  DD+   
Sbjct: 183 ASFL-HL-EPMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHM 292
            +  +      + + ++G +++ D +     Q   Q+   V + + + + V  +  G H 
Sbjct: 241 EIMPRI----ARPLLTYGFNEDNDIRAVDVDQDGMQTHFTVLRKEREPLRVTVNQPGLHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNA 348
             N L  +GI +       +  +AL  F    G G+R+      A+  G   L+D+ Y  
Sbjct: 297 VLNALAAIGIATDEGVSDASICRALEGF---SGVGRRFEVQGEFAIEGGDVKLVDD-YGH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  ++A I    Q  P    RR+ ++            F  D  EVLS  +   +  V+
Sbjct: 353 HPKEVEATIKAARQSHPD---RRLVMMFQPHRYSRTRDCFD-DFVEVLSTVDQLLLLDVY 408

Query: 406 LSGFHVLALKD--ALPRSIHVH 425
            +G   +   D  +L RSI + 
Sbjct: 409 PAGEKPIVGADSRSLARSIRLR 430


>gi|153006723|ref|YP_001381048.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp.
           Fw109-5]
 gi|166222952|sp|A7HH68|MURC_ANADF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152030296|gb|ABS28064.1| UDP-N-acetylmuramate--alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 45/262 (17%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI GS GKTTT  +    +A + +  T A +G   N  G    L R     D+ + E  
Sbjct: 111 VAIAGSHGKTTTTSLAAHLLAHAGLDPT-AVVGGKVNTFGSNAKLGRG----DYMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL   + P IA++T I P HL ++   E +     +    +   G   L  D
Sbjct: 166 ES---DGSFLH--IPPTIAIVTNIDPEHLDHWKTEEALRKGFLDFVNRVPFYGRAILCID 220

Query: 229 DSFFELLKAKSHALGIKTIY-SFGKSKNADF------------QLRKWKQCSEQSWMEVQ 275
               + L  +     +++ Y ++G+S  AD+            +   +++       EV+
Sbjct: 221 HPTVQSLLPE-----VESRYVTYGESHQADYRADGIEVSGHAVRFDAFRRDEPLGRFEVR 275

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L           +G H A N L  + I   +    D   +AL+ F    G  +R+     
Sbjct: 276 L-----------VGRHNALNALAVVAIADEMGVPADVTREALASFG---GVQRRFTVRGE 321

Query: 336 QGFFTLIDESYNANPASMKAAI 357
            G  T++D+ Y  +PA +KA +
Sbjct: 322 AGGVTVVDD-YGHHPAEVKATL 342


>gi|307154434|ref|YP_003889818.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
 gi|306984662|gb|ADN16543.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
          Length = 498

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 148/391 (37%), Gaps = 72/391 (18%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+F   DVL AL K   +         IA+ G+ GKTTT  ++   L             
Sbjct: 134 PIFHRSDVLAALIKDYYS---------IAVAGTHGKTTTSSLIGYMLLKAGLD------- 177

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV----------RPHIAVITTIA 193
                 P  +    VD        G + LG+ RFL               P I ++T I 
Sbjct: 178 ------PTIIVGGEVDA-----WQGNARLGQGRFLVAEADESDGSLAKHSPRIGIVTNIE 226

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H  ++  +EE+     + F+  E+     +   D   E ++ +   L  +  YS    
Sbjct: 227 LDHPDHYQNLEEV----IQTFQIFERQCETLIACIDC--ETVRQR---LNPQITYSLDPE 277

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDT 312
           K AD+ ++     ++ S +EV  +G+ +  ++   +G H   N L  + +   L  D + 
Sbjct: 278 KEADYTVKNVVYHAQGSLVEVWERGQYLGQMNISLLGQHNVSNSLAAVAVGRKLGLDFEE 337

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS-------------V 359
              A++ F   EG  +R+    +    T ID+ Y  +P+ ++  +              V
Sbjct: 338 IAVAVATF---EGAKRRFEHKGHCNGITFIDD-YAHHPSEIRCTLEAARLRSHQDCYSRV 393

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           ++   PH   R          M E + SF   D+  +  +Y+   V L       + DA+
Sbjct: 394 VAIFQPHRYSRTATF------MDEFATSFSDADVVIITDIYSAGEVNLGQMSGQQVADAI 447

Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V+Y  ++  L  F+   L  GD+ +
Sbjct: 448 SCYHKQVYYHPSLKSLGSFLVEILQPGDLAL 478


>gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
 gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           + +I +TGS GKTT   M+ + L       A +     +IGVP  T+ +     D  + E
Sbjct: 116 SELIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAG---NIGVPATTVVQKATANDRVVME 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I  L     PHIAV+  I   HL      E   + K  I E   K     +N
Sbjct: 173 LSSFMLAGIDQL----HPHIAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYFVIN 228

Query: 227 YDDSFFELLKAKSHA 241
           +D+  ++ L  ++ A
Sbjct: 229 WDNPEWQQLAQRTAA 243


>gi|323127721|gb|ADX25018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ I+ ITGS GKTTT  M+   L++  ++    G    +IG P + + +     
Sbjct: 106 AYLVSESPIVGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASEVVQKASAN 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I       +PHIAVIT + P HL      E+  +AK  I   +   
Sbjct: 162 DTLVMELSSFQLMGIDAF----KPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN +      L   + A
Sbjct: 218 DYLILNANQEISAALAKTTKA 238


>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 478

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 42/224 (18%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +N   VA  +      I ITG+ GKTT   +L+  L            +  +IG P
Sbjct: 106 VIGEIN---VAWEILKDTNWIGITGTNGKTTVTHLLSHILCDT----GLYAPFAGNIGTP 158

Query: 151 L---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           L     ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   
Sbjct: 159 LCKYAYSKKTEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYF 214

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----ALGIKTIYSFGKSKNADFQLRKW 263
           + K  +   LEK+     NYDD        ++H    + G+    SF KS         +
Sbjct: 215 NIKKSL---LEKSDFRIYNYDDK-----NLRNHYSSLSRGVWITTSFDKS--------NF 258

Query: 264 KQCSEQSWMEVQL----QGKSMEVVHHG--IGYHMAQNMLMTLG 301
            QC    W++ Q     +GK +  + H    G H  QN+L+ + 
Sbjct: 259 IQC--DYWIDDQAFIVERGKKLFKLEHFSLKGMHNLQNLLLVIA 300


>gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
 gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L    A   +  T+         IG  LT A     +    + + 
Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +  +      +   ++G S+ AD +    +Q   Q+   V  + +  +EV  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDREPLEVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNALATIAIATDEGITDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL   N+ 
Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWP---SRRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451
               V+ +G   +   D+      +     +D +++         ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGVELAPLVKPLLRAGDILICQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDVG 461


>gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
 gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 104/262 (39%), Gaps = 29/262 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+A  I ITGS GKTTT  ++   L   +K     G    +IG V   +A+     +  +
Sbjct: 109 SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAG----NIGTVACEVAQKATKDNVIV 164

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I       RP I+++  +  AHL      EE   AKA +F          
Sbjct: 165 TELSSFQLMGIEKF----RPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSEDFAV 220

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280
           +N DD    ++KA +     K  +S          ++     +K     S  +V L GK 
Sbjct: 221 INADDEL--VMKASADVKATKVPFSVTAQTTEGAYIKNETIFFKDEEVMSLKDVVLPGK- 277

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                     H  +N+L  + +V +     +   + L+ F   + R  +Y   +N+  F 
Sbjct: 278 ----------HNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHRV-QYVTTINKRKF- 325

Query: 341 LIDESYNANPASMKAAISVLSQ 362
             ++S   N  + K A+S  SQ
Sbjct: 326 -YNDSKATNMLATKVALSAFSQ 346


>gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 495

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 107/466 (22%), Positives = 173/466 (37%), Gaps = 68/466 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+ +DSR +AP +AF AI G    G  F+  A   GAG V+       +   + +P  
Sbjct: 22  VCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEP---PAPNGMPVPAD 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 79  AI-AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 138 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237
             +AV T +   HL     + +  +AKA++F   GL+      +N DD+F    F  L  
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDAFGRTLFASLDP 250

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A+G+    S     +A    +  +         + +QG+   V    +G     N+L
Sbjct: 251 ALRAIGV----SSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLL 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G +  L          L    P  GR  R   A       L+   Y   P +++ A+
Sbjct: 307 AVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 363

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           S L     H + R I V G  C  GE        +A +  L            V  + D 
Sbjct: 364 SSLRS---HAQDRLICVFG--CG-GERDTGKRPQMAAIAELNA---------DVAIVTDD 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            PR      SE  D +   I       D  +V+   +   ++ I +
Sbjct: 409 NPR------SEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGM 448


>gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
 gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
          Length = 519

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 156/392 (39%), Gaps = 73/392 (18%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-------MVASIGSLS 82
           I+ DSR + P   FFA  G   +   FI  A+  GA LVV   D        V ++ SL 
Sbjct: 34  ITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAVLVVTEADYADPRVIRVEAVHSLV 93

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIG 141
           + + G            V A      TII ITG+ GKT+  + +  ALS     + A IG
Sbjct: 94  LQMVG-----------HVCAVNFDDLTIIGITGTNGKTSVAQFIAGALSRSGAPHTASIG 142

Query: 142 -------------------SYNNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
                              + N   G+  TL R  VD       + + E+    L + R 
Sbjct: 143 MIGTLGAGMWSSGLENLQPTANTTPGLLETL-RYAVDFIRQGARYVVMEVSSHALEQNRL 201

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYD----DSF 231
               +R  +AV T ++  HL     + E  +AK ++F   GL + G I  N+D    D  
Sbjct: 202 QGLPIR--LAVFTNLSRDHLDYHGTMAEYFAAKTKLFAWPGL-RAGII--NFDEAQADVL 256

Query: 232 FELLKAKSHALGIKTIYSFGKS--KNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287
           FE L A +        Y  G    + AD Q +R     +  + +++Q++    E      
Sbjct: 257 FEALGATADCWA----YGLGDPDWRVADCQHVRVTSITALPNGIDIQVRTPLGEARLQPS 312

Query: 288 -IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N++  L  V  L   ++TAIKAL    P  GR +     L  G   L+D  Y
Sbjct: 313 LVGLFNGANIMAALAAVLALGMPLETAIKALDQSTPPPGRMQMI--TLPSGARALVD--Y 368

Query: 347 NANPASMKAAISVLSQISPHGE--GRRIAVLG 376
              P ++     VL  +  H +  G+ I V G
Sbjct: 369 AHTPDALD---QVLRALRDHRDAAGKIICVFG 397


>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           fischeri ES114]
 gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
           ES114]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 62/362 (17%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  + LT  ++        +G    +IG    L  +  D +  + E
Sbjct: 71  NAPVIAITGSNGKSTVTD-LTGEMAKAAGVKTAVGG---NIGFA-ALDLLEQDAELYVLE 125

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IFE  E      +N
Sbjct: 126 LSSFQLET----TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAE---VCIVN 178

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++    KT+ SFG  +  D+       C E+  +E  L   ++ ++  
Sbjct: 179 RDDK-------QTYPDVEKTLKSFGFDQ-GDY------GCIEKDGIEY-LAKNTVPLLAA 223

Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339
                +G H   N L+ + ++     ++D  +  L  ++     G  +RC   A N G  
Sbjct: 224 NELGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYN-----GLTHRCQVVADNNG-I 277

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396
             +++S   N AS  AA+S L       EG+    +  +G   +  ELS + H DL   L
Sbjct: 278 RWVNDSKATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFSELSPALH-DLN--L 329

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +Y        G   ++L    PRS+     ETM+     +  +L  GD+V++  S +C 
Sbjct: 330 MMYCFGE---DGDQFVSLD---PRSL---LCETMNEAIATLYPTLNKGDMVML--SPACA 378

Query: 457 FY 458
            +
Sbjct: 379 SF 380


>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
 gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 157/400 (39%), Gaps = 47/400 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR I P + F A +G + DGH FI  A+ +GA  V V  + +       +      
Sbjct: 27  IHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRGA--VAVVCEQLPENRPEEVTYIWTA 84

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  +A         +  ++ +TG+ GKTTT  +L   +    +    + +  N+I
Sbjct: 85  DTSEALGVMAGNYWDNPSRELKLVGVTGTNGKTTTATLLYELVRLAGEKAGLLSTVCNYI 144

Query: 148 G---VPLT------------LARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVI 189
           G   +P T            L RM   VD G    F    SH    + +  L     A+ 
Sbjct: 145 GEEKIPATHTTPDALSIQELLRRM---VDAGCRYCFMEASSHAIHQKRIAGLDFDG-AIF 200

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGIKTI 247
           + I   HL      +    AK   F+ L        N DD      L   ++H       
Sbjct: 201 SNITHDHLDYHKTFKAYIEAKKAFFDRLPAHAFALTNADDKNGLVMLQNTRAHR------ 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y++     ADF  +  ++  + + +  +L G+  EV     G   A N+L       +L 
Sbjct: 255 YTYSCRTMADFTAKAIEKHLDGTLL--RLDGE--EVWTKFTGDFNAYNLLAVYAAARLLG 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +  ++ +S+  P  GR +       +G   ++D  Y   P +++  +S +  +    
Sbjct: 311 FPKENVLEYVSLLVPVSGRFE--TLISTEGVMAVVD--YAHTPDAVENVLSTICGL---- 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           +GR   V+  +   G+  ++   ++A+    Y+  HV L+
Sbjct: 363 KGRDNQVITVVGAGGDRDKTKRPEMADAACRYS-DHVILT 401


>gi|111115652|ref|YP_710270.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia afzelii PKo]
 gi|216263556|ref|ZP_03435551.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
 gi|123341262|sp|Q0SM34|MURC_BORAP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110890926|gb|ABH02094.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii PKo]
 gi|215980400|gb|EEC21221.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
          Length = 468

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 27/185 (14%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139
           L+IP+    +VLG L++         K   + I GS GKTTT   L +  + +       
Sbjct: 96  LNIPILSYSEVLGELSR---------KYYSVGIAGSHGKTTTTAFLGLLFNKLGLNPNVI 146

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197
           +GS     G    +A        GI  + ++   E +   H +   P++ ++T I   H+
Sbjct: 147 VGSSVKDFGDNSAIA--------GISNIFIAETCEYK--KHFLHFSPNMLILTNIDYEHV 196

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKN 255
             F   E +  A  +    L+K G + +N DD+   LLK K   +  K   I+SFG    
Sbjct: 197 DFFENYEALEDAFLQYINNLKKNGILIINSDDN--NLLKIKRQ-INRKDINIFSFGSKDL 253

Query: 256 ADFQL 260
           ++FQ+
Sbjct: 254 SNFQI 258


>gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 145/383 (37%), Gaps = 70/383 (18%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV ++ +      VA   +  IPV    ++L  L +L            IAI G 
Sbjct: 63  EGAEVVVTSSAIDSRNPEVAEAHANHIPVIQRAEMLAELMRLKYG---------IAIAGM 113

Query: 117 VGKTTTKEMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            GKTTT  M+   L+         +      +GS N  +G    L     + D    +L 
Sbjct: 114 HGKTTTTSMVAAVLAGGELDPTVIVGGRVDAMGS-NARLGKSHYLVAEADESDRSFLKLW 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             H               AV+T I   H+  +  +E++     E  + +   G +    D
Sbjct: 173 FIH---------------AVVTNIDREHMDTYHDMEDVERTFVEFMDRVPFYGMVVACND 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ------SWMEVQLQGKSM- 281
           +     +  +      + I ++G ++ +DF +R     SEQ      +   V+ +GKS+ 
Sbjct: 218 NEPLRAILPRVR----RRIVTYGTTEGSDFLIRCVPCDSEQLLLGFLNRFSVEYRGKSLG 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E +    G H  +N    + I   L    D    AL+ F    G  +R++        ++
Sbjct: 274 EFLLRVPGLHNVRNATAAIAIGVGLDIPADKIRAALAEFR---GVDRRFQLKGKANDISV 330

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSF-HID 391
           ID+ Y  +P  ++A ++   Q           PH    R     D+  M E + SF   D
Sbjct: 331 IDD-YGHHPTEIRATLAAAKQCGFRHIHVVFQPH----RYTRTRDL--MDEFASSFGDAD 383

Query: 392 LAEVLSLYNISHVWLSGFHVLAL 414
              +L +Y  S   + G +  AL
Sbjct: 384 SLYLLDIYPASEQPIEGVNTEAL 406


>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
 gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GKTTT  +    LS+ +     +G+        ++      D D+ + EL   
Sbjct: 113 IAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIGE---TAISQVDRRQDGDWFVAELSSY 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      T    P  AV+  I P HL    G E  A AK +I + L++     ++ DD 
Sbjct: 170 QLA----TTSEFHPRAAVLLNITPDHLRWHRGFENYARAKLKILQNLDENDLAIIDVDDP 225

Query: 231 FFELLKAK 238
               L ++
Sbjct: 226 GLRRLGSQ 233


>gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 516

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 3   PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           P     DL QA+ G  H  G    G V G  ID+R++   E F A+ G H  G  F   A
Sbjct: 18  PWVEVTDLAQAVGGTVHGDG----GSVRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             +GAG V+ + + +A +  L IP   V DV     + A  A
Sbjct: 74  ASRGAGAVLSDPEGMAFLTDLDIPAIIVPDVASVAGQAAAIA 115


>gi|251782916|ref|YP_002997219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391546|dbj|BAH82005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 456

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
           A L S++ I+ ITGS GKTTT  M+   L++  ++    G    +IG P + + +     
Sbjct: 110 AYLVSESPIVGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASEVVQKASAN 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +       +PHIAVIT + P HL      E+  +AK  I   +   
Sbjct: 166 DTLVMELSSFQLMGVDAF----KPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTAD 221

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
             + LN +      L   + A
Sbjct: 222 DYLILNANQEISAALAKTTKA 242


>gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 33/287 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---LHAVQKGAGLV---------VVNTDM 74
           V GI + + +IA +       G H  G+D +   L A  +  G+V         V N D+
Sbjct: 10  VGGIGVSALAIAAKRL-----GAHVAGYDSVANKLTAKLEALGIVIFTSPNGVDVANFDI 64

Query: 75  VASIGSL--SIPVFGVDDVLG--ALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V    ++  S P+      LG   L + + +A  ++  +  +AITG+ GKTTT  +L   
Sbjct: 65  VVYSSAILSSHPLLSQARSLGIQCLQRAMFLAVLMKDFSYSLAITGTHGKTTTSSVLATL 124

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEIRFLTHLVRPHIAV 188
           L  + K  + I      +G  +  A   + V+ G  +L + +   +  FL   + P + +
Sbjct: 125 LCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIEADESDASFL--FLSPQVVI 175

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H++ ++   +        F   E   +I+L  DD     L AK +    K + 
Sbjct: 176 ITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSDKNVT 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           S+G S NAD Q+  +    E +  +++ +G  +       G +  QN
Sbjct: 235 SYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQN 281


>gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 152/380 (40%), Gaps = 54/380 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR + P + FFA+ G   DG  FI  AV  GA  +V +     +     +P  
Sbjct: 22  VTGVALDSRVVRPGDLFFALAGSKTDGARFIDAAVAAGAVAIVGDH----APDGCKVPFI 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEML-----------TIALS 131
            V +   AL   A        ATI A+TG+ GKT+    T+++            TI L 
Sbjct: 78  AVANPRRALALAAARFFPAQPATIAAVTGTSGKTSVAAFTRQIWERLGHASASIGTIGLV 137

Query: 132 SIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVR 183
           S K+T Y  + + +     P+ L R   +    I   G++HL       G  ++    VR
Sbjct: 138 SPKRTVYGSLTTPD-----PIALHRQMDE----IAREGVTHLAFEASSHGLDQYRLDGVR 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---TIFLNYDDSFFELLKAKSH 240
                 T ++  H+     +    +AK  +F  L   G    I  ++D S   +  AK+ 
Sbjct: 189 VSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVPPGGAAVISADHDCSAEAIDAAKAR 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L +  +   G       +L +         + V+ +GK   V+    G    +N L++ 
Sbjct: 249 GLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEHRGKRYVVLLPLAGEFQVENALVSA 308

Query: 301 GIVSILTADVDTAIKALSVF----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           G+       + T   A +VF    H +  +G+  R     G    +D  Y   P ++  A
Sbjct: 309 GLA------IGTGSDAANVFASLEHLEGAKGRLERVGERNGAPIFVD--YAHKPDALAKA 360

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +  L    P+ + R + V G
Sbjct: 361 LQAL---RPYAKRRLVVVFG 377


>gi|257784291|ref|YP_003179508.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472798|gb|ACV50917.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
          Length = 489

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 58/296 (19%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-------- 132
           LSIP++    +L  L+        R + TI A+ G+ GKTTT  M+   L          
Sbjct: 112 LSIPIWPRAKMLSYLS--------RGRKTI-AVAGTHGKTTTSSMIATMLDKLGADPSFL 162

Query: 133 ---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
              + + Y   G   N                + + E   S  G   FL     P + VI
Sbjct: 163 IGGVVEGYDTNGKNGNG--------------QYFVCEADESD-GSFMFLN----PSVVVI 203

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIY 248
           T I   HL ++  +E I +   E    L+K  T+ +N D+  + EL ++       + + 
Sbjct: 204 TNIEADHLDHYGSLENIENTFCEFMSLLDKEETVVINGDNPHYVELAQSTG-----RHVV 258

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQL-----QGKSMEVV-HHGIGYHMAQNMLMTLGI 302
           ++G   + DF     KQ   ++ +E  L      G+++ VV     G H   N    + +
Sbjct: 259 TYGFDPSCDFVC---KQEERKAGIENPLTIKTPSGQTISVVLPANPGKHNVANATAAIAV 315

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              L  D++ A  ALS F   +G  +R+    +    T++D+ Y  +P  + A +S
Sbjct: 316 ADTLNFDLEEAAAALSQF---KGARRRFTHVGDINGITVVDD-YGHHPTEIAATMS 367


>gi|154488894|ref|ZP_02029743.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
 gi|154083031|gb|EDN82076.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
          Length = 479

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 31/175 (17%)

Query: 71  NTDMVASIGSLSIPVFGVDD--VLGA-------LNKLAVAARLR-------SKATIIAIT 114
           NTDMV     ++ PVF      +L A       ++++ +A +LR         A  I IT
Sbjct: 55  NTDMV-----MTSPVFNPRTPFILEAQKRNIPVMSEVELAWQLRVNSNTTGKPAQWIGIT 109

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKT+T EM +  L++       +G    +IG  ++ A +    D    EL    L  
Sbjct: 110 GTNGKTSTTEMTSEMLTACGLAAPAVG----NIGKAVSHAAVDPANDVLCVELSSFQL-- 163

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               T+ +    A IT IA  HL    GIE  A+ KA++F  ++K   +  N DD
Sbjct: 164 --HFTYSLELDCAAITNIADDHLDWHGGIENYAADKAKVFHNVKK--ALVYNADD 214


>gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           1330]
 gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis
           ATCC 25840]
 gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           canis ATCC 23365]
 gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis ATCC 23457]
 gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 3 str. Tulya]
 gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 5 str. 513]
 gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 3 str. 686]
 gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           neotomae 5K33]
 gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis
           1330]
 gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC
           25840]
 gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis
           ATCC 23365]
 gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis ATCC 23457]
 gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis M28]
 gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis M5-90]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
 gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGVDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
 gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
          Length = 494

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 143/383 (37%), Gaps = 36/383 (9%)

Query: 19  IGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           +G+  +G V+    GI++DSR +     F A+ G    G  F   A+  GA  ++ +   
Sbjct: 12  LGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAG 71

Query: 75  VASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---- 126
              +  L    ++ +  V+D   AL   +         T++A+TG+ GKT+    +    
Sbjct: 72  AQIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVRQIW 131

Query: 127 ------TIALSSIKKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEI 175
                  + L +     A     N+    P+TL           V     E     L + 
Sbjct: 132 IELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLDQR 191

Query: 176 RFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE 233
           R    HL     A  T     HL      E   +AKA +F   L + G   +N DD    
Sbjct: 192 RLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGP 248

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            ++A + A G + + S G+    D  L   +  +    M      K  +   + IG   A
Sbjct: 249 EMRAIAAARG-QEVISVGRGAG-DLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQA 306

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N+L+  G+V     D     + L       GR  +     + G    +D  Y   P ++
Sbjct: 307 ENILLACGLVIASGEDPQAVFETLPHLQTVRGR-MQLAATRDNGATVFVD--YAHTPDAV 363

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
             AI  L    PH  GR +A++G
Sbjct: 364 ATAIKAL---RPHVLGRLVAIVG 383


>gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
 gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
          Length = 473

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 137/345 (39%), Gaps = 52/345 (15%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158
           +R K+T+ AI G+ GKTTT  M+   L +  +  T      I SY ++       AR+  
Sbjct: 105 MRLKSTV-AIAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLGA 156

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D+ + E   S    +R         IAV+T I P HL ++   +++     E  E + 
Sbjct: 157 S-DWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDKVKDCFVEFVENVP 210

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   L  D    + +  +      + + ++G S  AD +          +  +V ++ 
Sbjct: 211 FYGAALLCIDHPEVQAIIPRVRD---RKVVTYGFSAQADVRGDNVTPIPGGNRFDVVVRN 267

Query: 279 KSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-- 330
           +  +     G+     G H  QN L  +G+   L  ++  AI A   F    G  +R+  
Sbjct: 268 RDGDTRRIEGVTLPMPGRHNVQNALAAIGVA--LEMNISDAIIATG-FAKFGGVKRRFTK 324

Query: 331 --RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMC 379
                +  G  T+ID+ Y  +P  ++A ++         V++ + PH    R   L D+ 
Sbjct: 325 VGEVPVGDGVATVIDD-YGHHPVEIRAVLAAAREGARAKVIAVVQPH----RFTRLRDL- 378

Query: 380 EMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            M E   +F+  D   V  +Y      + G    AL   L +  H
Sbjct: 379 -MTEFQTAFNDADTVYVAPVYAAGEAPIDGVDAAALVAGLKQRGH 422


>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 490

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+   ++++ P + F   KG    G  F+  A+ +GA  +V    +   I    IP  
Sbjct: 23  ITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPIIDKEIPFV 82

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V +    L+     +AA      T+IAITG+ GKTT    ++  L+++ K  A IG+
Sbjct: 83  WVPNTALFLSYASAKLAAFPAEALTVIAITGTNGKTTVSHFVSQLLNALHKHAAVIGT 140


>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 457

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +KK Y  +    N IG+P   T+     D  F + E+    L  I++     +P I  I 
Sbjct: 131 LKKQYEDVVVCGN-IGLPFIDTIETSSEDTIF-VLEISSFQLETIKYF----KPKIGCIL 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL+    +E    AK  IFE +++ G   LNYD++    L      L    +  F
Sbjct: 185 NITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDNNITRDL----IGLAKGNVIVF 240

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306
            K+K   F+   +    E   +    +GK+ EV+        G H  +N L  +      
Sbjct: 241 SKTK-TQFENVVF---VENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPF 296

Query: 307 TADVDTAIKALSVFHPKEGR 326
             + DT  + L  F   E R
Sbjct: 297 GIEKDTIEQVLKTFRGVEHR 316


>gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
 gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
 gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 165/413 (39%), Gaps = 52/413 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG D +++     A +   N +++ ++    IP+    ++LG L        + +  T I
Sbjct: 97  DGIDCVVYT----AAIRRENAELMEAVAK-KIPMLTRAELLGQL--------MANYKTPI 143

Query: 112 AITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           A++G+ GKTTT  M++ + L+        +G     IG  + +         GIF     
Sbjct: 144 AVSGTHGKTTTTSMISHVLLAGDTDPTISVGGILQAIGGNIRVGSS------GIFVTEAC 197

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-D 229
                 FL     P I++I  I   HL  F  +E+I  +  +    L   GT+ +N + D
Sbjct: 198 EYTN-SFLHFF--PKISIILNIEADHLDFFKDLEDIRHSFHQFAALLPSDGTLIINGEID 254

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK-SMEVVHHG 287
            + E+ +         ++ ++G S   D+  +      + +   +    GK    +V   
Sbjct: 255 QYQEICEGLD-----CSVVTYGMSPEFDYSAQNITYDEKGRVAFDFFRNGKLDTHIVLSV 309

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +    +L   +DT  K L  F    G  +R+         T++D+ Y 
Sbjct: 310 TGDHNVSNALSAIATAELLGLSMDTIQKGLLSF---SGTDRRFEYKGTIDDVTIVDD-YA 365

Query: 348 ANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +                PH   R  A   +  E   LS + H+ LA++ + 
Sbjct: 366 HHPTEIKATLKAAKHYPHRKLWCVFQPHTYTRTKAFFQEFAEA--LSHADHVILADIYAA 423

Query: 399 YNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449
                + +S     AL DA+ RS+    HY  +   +  F++ +   GD+V+ 
Sbjct: 424 RETDTLGVSS---EALSDAI-RSLGTDSHYFPSFAEIETFLKENWNAGDLVLT 472


>gi|320161737|ref|YP_004174962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
 gi|319995591|dbj|BAJ64362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
          Length = 460

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 25/156 (16%)

Query: 110 IIAITGSVGKTTTK----EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----PVDVD 161
           +I ITGS GKTTT      M + A+ + +K +        +IGVPL + R+    P DV 
Sbjct: 112 VIGITGSAGKTTTTTLVGRMASRAVVAPQKAWV-----GGNIGVPL-IDRLDEIQPADVV 165

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L   +++T    P +A +  I P HL     +E   +AKA I E    T 
Sbjct: 166 --VLELSSFQL---QWITR--SPQVAAVLNITPNHLDRHGTMEAYTAAKARILEFQSATD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              L  +D+    L+ K        + SFG +  A+
Sbjct: 219 IAVLGREDAGAWGLREKVRG----DLISFGLNHPAE 250


>gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 6 str. 870]
 gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 4 str. 292]
 gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 9 str. C68]
 gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
 gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine
           nucleotide-disulphide oxidoreductase, class
           I:Folylpolyglutamate s [Brucella melitensis biovar
           Abortus 2308]
 gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|330718754|ref|ZP_08313354.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc fallax KCTC
           3537]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 29/262 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T IA+ G+ GKT+T  +L   L +I  T   +G      GVP        +  F + 
Sbjct: 101 AQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLVGDGTGR-GVP--------NSRFFVV 151

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   ++ I ++ SA ++    ++K   IF 
Sbjct: 152 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYTDINDVTSAFSDFANNVKK--AIFA 204

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             DD     L  K+       IY +G      DF  +  ++ ++ S  +V  +GK + E 
Sbjct: 205 WGDDKHLRQLHPKA------DIYYYGVNPTRDDFVAQNIRKSTKGSHFDVTYRGKDLGEF 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +  +   D+D   + L  F    G  +R+    +    T+ID
Sbjct: 259 SVPLYGQHSILNALAVIAVAYMEKVDLDLLREYLMTF---TGVKRRF-SEKHIADITVID 314

Query: 344 ESYNANPASMKAAISVLSQISP 365
           + Y  +P+ + A +    Q  P
Sbjct: 315 D-YAHHPSEIDATLDAARQKYP 335


>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GK+TT  +++  L+S    Y   G    +IGV  +  R     D  + EL   
Sbjct: 107 IAVTGTNGKSTTTALISHILNSNGLDYPVAG----NIGV--SALRAKASKDGYVLELSSF 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  ++  T      IAV+  I P HL     +    +AK++IF+ ++K     +N D+ 
Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKKSYAVINIDND 216

Query: 231 F 231
           +
Sbjct: 217 Y 217


>gi|296133658|ref|YP_003640905.1| UDP-N-acetylmuramate/alanine ligase [Thermincola sp. JR]
 gi|296032236|gb|ADG83004.1| UDP-N-acetylmuramate/alanine ligase [Thermincola potens JR]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 158/373 (42%), Gaps = 39/373 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGV 149
           L  L++  V A L ++   IA+ G+ GKTTT  M+ + L  + +  T   +G     IG 
Sbjct: 90  LKILHRGDVLAGLMAEKKGIAVAGAHGKTTTTSMIALVLEKNGLDPT-VVVGGELFDIGS 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L +       G + +  +   +  FL   + P+I VIT I   HL  +   E+I +A
Sbjct: 149 NAKLGK-------GEYLVAEADESDGSFLK--LSPYIEVITNIEDDHLDYYGSTEKIDAA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             E  E +   G   L ++    ++L  K      K   S+G    A+++ R       Q
Sbjct: 200 FQEFTEKIPDEGFCILCFNSPKVKVLADKLK----KPFISYGIGVPAEYEGRNILCQGTQ 255

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           S ++V  + + +  +   + G H   N L  L +  ++    +    AL+ F    G G+
Sbjct: 256 SSVDVFYRNEYLGKLRLNVPGEHNLANALAALAVGRLVGLSFEQVADALASF---TGVGR 312

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMC 379
           R++        T++D+ Y  +P  +KA +          ++S   PH    R   L    
Sbjct: 313 RFQLIGQVKGITVVDD-YAHHPTELKATLQAARKAGFARIISVFQPH-RFTRTKFL---- 366

Query: 380 EMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLF 436
              +  ++FH  D+  +  +Y+     ++G     + D + +  +  V++ +T + +  F
Sbjct: 367 -YKQFGEAFHGPDIIIITEIYSAGEKPIAGVSAQLIIDEVKKHTTAPVYFLKTEEDILEF 425

Query: 437 IQSSLVDGDVVVV 449
           + ++   GD+V+ 
Sbjct: 426 LLANTRSGDLVLT 438


>gi|296110605|ref|YP_003620986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832136|gb|ADG40017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           TD+V     L+IP+         L ++AVA  L +   +IA+TGS GKTTT  ++   L 
Sbjct: 84  TDIVKKAQKLNIPI---------LTEVAVALSLFN-GRLIAVTGSNGKTTTTSLIRDMLE 133

Query: 132 SIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S  +     G    +IG P++ +     D +  + EL    L      T  +RP IA+IT
Sbjct: 134 SDGQQVTTAG----NIGTPVSEVVENLTDEETLLLELSSFQL----LGTPDIRPDIALIT 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            I   HL      +    AK +I +      T+ LN
Sbjct: 186 NIFANHLDYHGSRDNYVEAKFQITKNQTVDQTLVLN 221


>gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
 gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           + +I +TGS GKTT   M+ + L       A +     +IGVP  T+ +     D  + E
Sbjct: 116 SELIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAG---NIGVPATTVVQKATANDRVVME 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I  L     PHIAV+  I   HL      E   + K  I E   K     +N
Sbjct: 173 LSSFMLAGIDQL----HPHIAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYFVIN 228

Query: 227 YDDSFFELLKAKSHA 241
           +D+  ++ L  ++ A
Sbjct: 229 WDNPEWQQLAQRTAA 243


>gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 156/396 (39%), Gaps = 71/396 (17%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L+IP+     +LG +        ++     IA+ GS GKTTT  ++++ L  ++     
Sbjct: 89  ELNIPIIDRATLLGLI--------MKKYKYGIAVAGSHGKTTTTSLISVILDGMEFD--- 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVIT 190
                     P  L    VDV  G   +G S      F+T             P+IAVI 
Sbjct: 138 ----------PTVLVGGEVDVIGGNVRVGSSEY----FVTEACEYTDSFLKFYPYIAVIL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL  F  I+ I  +  +    +   G +    DD+    +    + L  K I ++
Sbjct: 184 NVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYV---VNGLN-KNIVTY 239

Query: 251 GKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
           G  +++D++ +      K C   +  +V  + + M      I G H   N L  L +  +
Sbjct: 240 GIYEDSDWKAKNISFDDKGC---AIFDVYYKEEYMGNFKLSIPGKHNVYNALAALAVSHL 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------- 358
           +  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA +        
Sbjct: 297 VGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKATLEAAKNYPH 352

Query: 359 --VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             ++    PH   R  ++L D  E      SF  D A+ + + +I         +++ KD
Sbjct: 353 KRIICIFQPHTYSRTKSLLNDFAE------SF--DNADKIIIADIYAAREKDTGIVSSKD 404

Query: 417 ALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +     R   V Y +  D +  ++  +   GD+V+
Sbjct: 405 LVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVL 440


>gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 475

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 43/268 (16%)

Query: 111 IAITGSVGKTTTKEML-----------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           +A+ G+ GKTTT  ML           T  +  I + Y      N H G   T A   V+
Sbjct: 110 LAVAGTHGKTTTSSMLASVLDGMGEDPTFLIGGIVRAYGT----NAHSG---TGAHYVVE 162

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D              +   HL  P   ++T I   HL ++  ++EI    A     +  
Sbjct: 163 ADE-----------SDKSFMHL-SPRAVLVTNIEADHLDHYRDLDEIYEKFASFIGSVPD 210

Query: 220 TGTIFL--NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            G + +    D++   + +A       K ++++G S   D ++  ++     S   ++L 
Sbjct: 211 DGGVVVACGEDEALVRVARASG-----KRLFTYGFSDACDVRIASYEPNGVGSDFTLELP 265

Query: 278 GKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             S+   H     G H   N    +G++  L  D   A +AL+ F    G  +R+     
Sbjct: 266 DGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADF---AGVKRRFDLVGE 322

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI 363
            G  T++D+ Y  +P  + A I   S +
Sbjct: 323 AGGVTVVDD-YAHHPTEIAATIEAASHL 349


>gi|225351421|ref|ZP_03742444.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157765|gb|EEG71048.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 480

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  I ITG+ GKT+T EM +  L++   T   +G    +IG  ++ A +    D    EL
Sbjct: 104 AQWIGITGTNGKTSTTEMTSEMLTACDLTAPAVG----NIGKAVSHAVVDPANDVLCVEL 159

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +    A IT IA  HL    GIE  A+ KA++F  ++K   +  N 
Sbjct: 160 SSFQL----HFTDSLALDCAAITNIADDHLDWHGGIENYAADKAKVFHRVKK--ALVYNA 213

Query: 228 DDSFFELLK-AKSHALGIKTIYSFGKSKNADFQL 260
           DD     L  A   A G + +  F  S+  D Q+
Sbjct: 214 DDERVTRLAFAAETAEGCRKV-GFTLSEPQDGQI 246


>gi|325923953|ref|ZP_08185543.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325545579|gb|EGD16843.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    I +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDSDHLENYGNDFSRIQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L +K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALASKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    +T  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPETIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|313634141|gb|EFS00802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria seeligeri FSL N1-067]
          Length = 147

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +++++YN++P +++  +     +   G+ + + VL DM E+GELS   H + AEVL    
Sbjct: 19  ILNDAYNSSPTALQTVLKTFMHMDSKGKPKYL-VLADMLELGELSVPLHQESAEVLEEGT 77

Query: 401 ISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           I  ++L G  + A        I    V + +T + L   +   +   + ++VK S   G 
Sbjct: 78  IEKIFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKEITGNEWILVKGSYGMGL 137

Query: 458 YRLINLLL 465
             ++  L+
Sbjct: 138 KDVVENLI 145


>gi|289640743|ref|ZP_06472914.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509319|gb|EFD30247.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M+T+AL +     +  IGS  N  G          +   G  E+ +
Sbjct: 119 LAVAGTHGKTTTSLMVTVALQACGADPSFVIGSDINEAGS---------NAHAGTGEIFV 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   E      L+ P  A++T +   HL  +   E++ +A A   +G++  G +    DD
Sbjct: 170 AEADESDGGFLLLAPSGAIVTNVEADHLDYYQRPEDVEAAFARFVDGVDPNGFVVACADD 229

Query: 230 SFFELLKA---KSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
               LL A   +    G K   + ++G+S +A  ++      +  S  EV ++G+ + E+
Sbjct: 230 PGAALLVAALRERERDGGKAPRVTTYGESVDAHVRVELPMVSAAGSTCEVVVRGRRLGEL 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N    L     L       ++ L+ F    G  +R+      G   +ID
Sbjct: 290 SLRVPGRHNLHNAAGALAAGLELGLPAAGLLEGLAGF---AGARRRFETKGTAGGIRVID 346

Query: 344 ESYN 347
           +  N
Sbjct: 347 DYAN 350


>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
 gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
          Length = 492

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 149/375 (39%), Gaps = 46/375 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR +     FFAIKG   DGHDFI  AV +GA  +V    +    G +      
Sbjct: 23  RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVEVPPGVV------ 76

Query: 88  VDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           ++ V      LA AA         K  ++ +TG+ GKTTT  +L+       K    IG+
Sbjct: 77  LEVVPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIGT 136

Query: 143 YNNHIG---------VPLT------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +G          P +      LARM  + ++  + E+    L   R     V   +
Sbjct: 137 LYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLALERVTG--VAFDV 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIF--LNYDDSFFELLKAKSHAL 242
           AV T +   HL     +E+    KA +F  L  EK G     +N DD + + L +    +
Sbjct: 195 AVFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCRGV 254

Query: 243 GIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + T     G+    D++LR      E + +     G+ +EV     G     N L  L 
Sbjct: 255 EVLTYGLKEGEVHALDYELR-----PEGTRLLASAGGERVEVKLSLPGIFNVYNALAALA 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +D A +ALS      GR +  R    Q F  L+D  Y   P  +   +    
Sbjct: 310 VAVGEGMPLDLAARALSRVQAVPGRCE--RIDEGQDFTVLVD--YAHTPDGLLNILRTAR 365

Query: 362 QISPHGEGRRIAVLG 376
           +IS    GR I V G
Sbjct: 366 EIS---RGRVIVVFG 377


>gi|94264635|ref|ZP_01288418.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
 gi|93454930|gb|EAT05171.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 136/366 (37%), Gaps = 42/366 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV 158
           +A  +R K   IA+ GS GKT+T  M  + L+         IG   N  G    L     
Sbjct: 98  LAELMRLKVNGIAVAGSHGKTSTTSMAGVVLAEAGLDPTVVIGGQVNSFGSNAKLGTG-- 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF + E   S    +R       P + ++T I   H+ +++ +E + +A  E    + 
Sbjct: 156 --DFLVAEADESDGSFVRL-----SPVLEIVTNIDHEHVDHYADLEAVKAAFLEFINRIP 208

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   L  DD     L         K + ++G S  AD Q R+       S  EV  + 
Sbjct: 209 FYGAAILCLDDDNVTALLPMIR----KRVITYGLSSQADIQAREITTRGFISRFEVWSRQ 264

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           + +  V   + G H   N L  + +   L     T  +AL+ +    G  +R +      
Sbjct: 265 QRLGKVSLAVPGRHNVYNALAAIALGRELEIPFATIARALNNY---SGVQRRLQVKGESD 321

Query: 338 FFTLIDESYNANPASM------------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             T+ID+ Y  +P  +            +  + VL Q  PH   R   +  D C      
Sbjct: 322 GITVIDD-YGHHPTEIRATLAALRAAWPRRRLVVLFQ--PHRYSRTAGLFQDFC------ 372

Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLV 442
            +FH  DL  + ++Y      +      AL  AL R     V Y   +  L   +   L 
Sbjct: 373 TAFHDADLLILNNIYAAGEAEIPEVAGDALALALRRHGQREVSYVPELADLPTAVLGRLQ 432

Query: 443 DGDVVV 448
            GDVV+
Sbjct: 433 RGDVVL 438


>gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           +AITG+ GKTTT  +L   L  + K  + I      +G  +  A   + V+ G  +L + 
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 RYNVQN 281


>gi|290890810|ref|ZP_06553877.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
 gi|290479582|gb|EFD88239.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 35/269 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKT+T  +L   LS+ + T   IG                  V  G+F     
Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGD----------------GVGKGVFSSKYF 147

Query: 171 HLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +    +  H     P +A+IT I   H   +  ++++ SA +E  + ++K   IF   +
Sbjct: 148 VVEADEYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGE 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +K K+       I S+G  K+  F      + +E S+  +   G+ +      I
Sbjct: 206 DPEIKKIKPKT-----ARILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATI 260

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESY 346
            G H   +    + +   L   VD   K L  +     +G + R  ++Q    T++D+ Y
Sbjct: 261 EGDHGILDTTAAIAVADYLGFSVDQIQKGLLTY-----QGAKRRFNISQVADLTIVDD-Y 314

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  +KA I    Q  P+   R +AV 
Sbjct: 315 AHHPTEIKATIDAARQKFPN--KRLVAVF 341


>gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
 gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
          Length = 512

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +     +PV
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 106

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             + ++   L++LA           I +TG+ GKTT  +++   L  +    A +G+  N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166


>gi|118586734|ref|ZP_01544171.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
 gi|118432822|gb|EAV39551.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 35/269 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKT+T  +L   LS+ + T   IG                  V  G+F     
Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGD----------------GVGKGVFSSKYF 147

Query: 171 HLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +    +  H     P +A+IT I   H   +  ++++ SA +E  + ++K   IF   +
Sbjct: 148 VVEADEYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGE 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +K K+       I S+G  K+  F      + +E S+  +   G+ +      I
Sbjct: 206 DPEIKKIKPKT-----ARILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATI 260

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESY 346
            G H   +    + +   L   VD   K L  +     +G + R  ++Q    T++D+ Y
Sbjct: 261 EGDHGILDTTAAIAVADYLGFSVDQIQKGLLTY-----QGAKRRFNISQVADLTIVDD-Y 314

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  +KA I    Q  P+   R +AV 
Sbjct: 315 AHHPTEIKATIDAARQKFPN--KRLVAVF 341


>gi|307294498|ref|ZP_07574340.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878972|gb|EFN10190.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           ++G +   A+A     K  ++ ITG+ GK+TT    T  +  I +T         +IG+P
Sbjct: 93  IIGDIELFALARPALPKHRVVGITGTNGKSTT----TALVHHIIETAGIPTRMGGNIGLP 148

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L + P+  + G++ L +S   +I  LT  +   +AV+  I P HL  ++G E   ++K
Sbjct: 149 I-LGQEPLP-EGGVYVLELSSY-QID-LTQSLDCDVAVLLNITPDHLDRYNGFEGYVASK 204

Query: 211 AEIFE 215
           A +FE
Sbjct: 205 ARLFE 209


>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M163/99/10]
 gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis B2/94]
 gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M644/93/1]
 gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M13/05/1]
 gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M292/94/1]
 gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           F5/99]
 gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
 gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
 gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
          Length = 486

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 136/367 (37%), Gaps = 48/367 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR +     F AI G   +GH++I  A + GA  +V        +  L  P  
Sbjct: 23  ITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSGATAIVCE-----QLPQLLFPDV 77

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML--------------- 126
               V    + LA+ A         K T++ +TG+ GKTT   +L               
Sbjct: 78  SYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAGQKAGLLS 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T+A+    + +    +  + + +   L  M    V +   E+    + + R  T  ++  
Sbjct: 138 TVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHR--TEGLQFA 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241
             + T +   HL            K   F+ L  T    +N DD       +  KA+   
Sbjct: 196 GGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDKNGAFMLQNTKAQKKT 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +KT YS  K+              E  +  + L+    EV    IG   A N+L    
Sbjct: 256 YALKT-YSDYKA-----------YIIESRFDGLLLRINQHEVWTKLIGEFNAYNLLAVYA 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             ++L  D   A+  +S   P  GR + Y  ++  G  T++D  Y   P +++  +  ++
Sbjct: 304 AATLLGIDELEALTLISAIEPVAGRFQ-YAVSVT-GVITIVD--YAHTPDALENVLKTIN 359

Query: 362 QISPHGE 368
            I  H E
Sbjct: 360 DIRTHNE 366


>gi|269118800|ref|YP_003306977.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
 gi|268612678|gb|ACZ07046.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 36/336 (10%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V++ +  + +  + A L + +  IA+ G+ GKTTT  ML I +   K     +G    
Sbjct: 85  YAVNNNIKKIKRGELLALLMNDSKGIAVAGTHGKTTTSSMLGITMLE-KDPCIVVGGIIP 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG    +     + ++ I E   S      +LT    P  +++T +   HL N    E 
Sbjct: 144 EIGSNSKVG----NSEYFIAEADESD-NSFLYLT----PSYSIVTNVEADHLENHGSYEN 194

Query: 206 IASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           I   K    E ++KT  I  LN D    + L  K+  +    I+     ++AD      +
Sbjct: 195 I---KKSFEEFIDKTSDIVVLNKDCHEIKKLNLKNKNI----IWYSINDESADIYAANIE 247

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             + +S  EV   G+S+      I G H   N L  + +      D+D   + L  F   
Sbjct: 248 YKNRESHYEVVKNGESLGKFRLSIPGEHNISNSLGVIYLAHEFLCDMDKVKEYLYNFR-- 305

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAV 374
            G  +RY+   ++    +ID+ Y  +P  + A I+   +I          PH   R    
Sbjct: 306 -GANRRYQILYDKS-IKIIDD-YAHHPTEITATINAAKKIETGKITVVFQPHRYSRTNFF 362

Query: 375 LGDMCEMGELSQSFH---IDLAEVLSLYNISHVWLS 407
           L +  E  +L+   +   I  AE  ++YNIS   L+
Sbjct: 363 LNEFAESLKLADEVYLLPIYSAEEENIYNISSEKLA 398


>gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR +     FF +KG ++   +F+  AV+ G    V  TD       ++IPV  V+
Sbjct: 38  ISYDSREVDASTLFF-VKGDNFK-KEFLEKAVESGLQFYVSETDF-----EVTIPVILVN 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           DV  A++ LA+      + K  ++A TG+ GKTT+
Sbjct: 91  DVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTS 125


>gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M490/95/1]
 gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           B1/94]
 gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
 gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|15639888|ref|NP_219338.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189026126|ref|YP_001933898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum
           subsp. pallidum SS14]
 gi|6093445|sp|O83873|MURD_TREPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3323217|gb|AAC65856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018701|gb|ACD71319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060261|gb|ADD72996.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 532

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S A ++A++GS GK++T   L  +L ++    A +G   N    PL   R        + 
Sbjct: 115 SPAPLLAVSGSKGKSSTASALCYSLRALGFP-AFLG--GNSTVSPLEFVRHTTPATPVVL 171

Query: 166 ELGMSHLGEIRFL---------THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           EL    L ++R +           L+RP IA++T I   H + ++ +E   + K  ++  
Sbjct: 172 ELSSWQLADLRAVDAQDHTVHHAGLLRPEIAIMTPIMADHQNWYADMESYVADKQVLYAH 231

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
                T+  N DD +      ++   G++  +   +S  
Sbjct: 232 QGTHDTLLCNADDGWGPRFACEAQKNGVRVFWYTAQSPE 270


>gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella
           cibaria KACC 11862]
          Length = 508

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 37/287 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +G +  ++ +S  +AP+   F IKG      +++  A+ KG   +V  T          +
Sbjct: 25  KGELKHLAYNSNDVAPETLLF-IKGRF--KAEYLTDAIAKGVKAIVAPTSFTHDT---DL 78

Query: 84  PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTIALS---SIK 134
           P + VDDV  A++ L++A     ++K  +I ITG+ GKT+      EML +A     ++ 
Sbjct: 79  PTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITGTKGKTSATYMAYEMLRVATDDKVALS 138

Query: 135 KTYACIGS------YNNHIGVP--LTLAR-MPVDVDFGIFELGMSHLGEIRFLTHL--VR 183
            T   I        Y  H+  P  L L R M   V  G+  + M    +   +  +  +R
Sbjct: 139 STLQVITGADPKFHYRAHLTTPESLDLFRWMAEAVANGMTHMVMEVSSQAYKMERVYGLR 198

Query: 184 PHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSH 240
            ++ V   I+P H+  +     E+    K  +F+  E+   I LN D D F EL++    
Sbjct: 199 FNVGVFLNISPDHVGENEHPTFEDYLEHKMMLFDHSEQ---IILNADSDHFSELIEHAEL 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           A+    I+ +G+      +   +        +E  LQG +  V   G
Sbjct: 256 AVPRDGIWLYGREDEDSPKADVYYDT-----VEADLQGSTFAVREAG 297


>gi|323126630|gb|ADX23927.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 40/279 (14%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE   S  
Sbjct: 108 VAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE---SDE 155

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E  F+ +   P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D   
Sbjct: 156 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQ-- 209

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291
           EL K  ++A     IY +G  +  DF      + +  S   V+  G+ +   H    G H
Sbjct: 210 ELKKITANA----PIYYYGFEEGNDFVTSDIARTTHGSDFTVKHDGQIIGRFHVPAYGRH 265

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANP 350
              N    +  + +   D++   + L  F    G  +R+   L N+   T+I + +  +P
Sbjct: 266 NILNATAVIANLFVAGIDMELVAEHLKTF---SGVKRRFTEKLINE---TIIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
             + A I    Q            PH   R IA+L D  
Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFA 358


>gi|289209363|ref|YP_003461429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
 gi|288944994|gb|ADC72693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 16/146 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A +IAITGS GK+T   ++   L++  +  A  G++    G P      PV V+  + 
Sbjct: 105 AQAPVIAITGSNGKSTVTALVGEILTAAGRKVAIGGNF----GTPALDLLDPV-VEVYVL 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      +  ++P  A I  I+P H+  +  +     AKA I   L++     L
Sbjct: 160 ELSSFQLER----SEQLKPDGAAILNISPDHMDRYPDLAAYIQAKARI---LDRAARGVL 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG 251
           N DD +   L   +   G++ + SFG
Sbjct: 213 NRDDPWLRELPLPA---GLRVV-SFG 234


>gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
 gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
          Length = 467

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGVDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIR-VMRISKEKHLDRGYFADGAKLLWSQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
 gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
          Length = 486

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 61/375 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281
             +  DD     L  K      + + ++G S +AD ++  ++Q  +Q    V  QGK+ +
Sbjct: 230 AIVCVDDPVVRELIPKIS----RQVITYGFSDDADVRIANYRQDGQQGKFTVIRQGKADL 285

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCALN 335
           ++  +  G H   N L     +++ T D   D AI  LS     +G G+R+         
Sbjct: 286 DITLNIPGRH---NALNASAAIAVATEDDIADEAI--LSAMAGTQGTGRRFDHLGEFDTG 340

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAE 394
            G   L+D+ Y  +P  +   I    Q + +G E +R+ ++         ++  + D A 
Sbjct: 341 NGQAMLVDD-YGHHPTEVDVTI----QAARNGWEDKRLVMIFQPHRYSR-TRDLYDDFAN 394

Query: 395 VLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFL--------FIQSSL 441
           VL   ++     V+ +G   +A  D  AL R+I       +D +F+         + + L
Sbjct: 395 VLEQVDVLIMLDVYSAGEKPIAGADGRALCRTIRSRGK--LDPIFVPESKALPAVLANVL 452

Query: 442 VDGDVVVVKSSNSCG 456
            DGD+V+ + +   G
Sbjct: 453 QDGDLVLTQGAGDVG 467


>gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 476

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 147/358 (41%), Gaps = 55/358 (15%)

Query: 96  NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY 143
           N++ V  R       +R K+T+ A+ G+ GKTTT  M+   L +  I  T      I SY
Sbjct: 90  NRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINSY 148

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            ++       AR+  D D+ + E   S    +R    L     A++T I P HL ++   
Sbjct: 149 GSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AIVTNIDPEHLDHYGSF 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++  A  E    +   G  FL  D    + +  +   +  + + ++G S  AD +    
Sbjct: 196 EKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSILPR---IRDRRLITYGFSAQADIRAVDI 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIK-A 316
              S  +     ++ +  ++     I     G H  QN L  +G V++  +  D AI+  
Sbjct: 253 TPISGGNRFTAVIRSRDGDIRRIENIFLPMPGRHNIQNALSAIG-VALEFSIPDAAIRDG 311

Query: 317 LSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPH 366
            + F   + R  R     +  G   +ID+ Y  +P  +KA +S         V++ + PH
Sbjct: 312 FARFGGVKRRFSRVGEIKIGDGSVLVIDD-YGHHPVEIKAVLSAARESAQQRVIAVVQPH 370

Query: 367 GEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               R + L D+  M E   +F+  D+  V  +Y      ++G    AL   L +  H
Sbjct: 371 ----RFSRLHDL--MTEFQSAFNDADMVFVAPVYAAGEQPIAGVDSQALVSGLKQHGH 422


>gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 350

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 24/257 (9%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR + P + + AI+G   DGH FI  AV +GA  VV   D         +P   V     
Sbjct: 6   SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDVPYVRVTSARR 65

Query: 94  ALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148
           A + L+  V        T++ +TG+ G TT+   LT  L         + S  N  G   
Sbjct: 66  AASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNETGLRT 125

Query: 149 VPLTLARMPVD---------VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           VP  L  +            VD G     + +S  G ++  T  V   +A+ T +   HL
Sbjct: 126 VPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLTREHL 185

Query: 198 SNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
                +E  A+AKA +F GL  EK G I LN DD + +++        +  I ++G  ++
Sbjct: 186 DFHGSMENYAAAKARLFSGLSAEKPGAI-LNRDDPYADVMAENC----VAPIVTYG-VRS 239

Query: 256 ADFQLRKWKQCSEQSWM 272
            D + R  +   ++  M
Sbjct: 240 GDVRGRGERDRGKRPEM 256


>gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis
           str. MC2 155]
 gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 482

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P++AV+T I   HL +F G E+  +A  + F E +   G + +  DD     L  ++ AL
Sbjct: 183 PNVAVVTNIEADHL-DFFGSEQAYTAVFDSFVERIAPGGALVVCTDDPGAAALADRTDAL 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGI-GYHMAQNMLMTL 300
           GI+ +       N    L  W+Q    +   ++L G+ +   V   + G HMA N L  L
Sbjct: 242 GIRVLRYGSTGDNLAGTLLSWEQQGTGAVAHIRLAGEHNPRAVRLSVPGRHMALNALAAL 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                + A  D+ +  L+ F   EG  +R+          + D+ Y  +P  ++A +   
Sbjct: 302 LAAREIGAPTDSVLDGLAGF---EGVRRRFELVGTAAGARVFDD-YAHHPTEVRATLEAA 357

Query: 361 SQISPHGEGR 370
             +     GR
Sbjct: 358 RTVVDQNGGR 367


>gi|294085903|ref|YP_003552663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665478|gb|ADE40579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 451

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 10/165 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++ +A R +S A +IAITG+ GK+T   +L   L+      A  G    +IG      
Sbjct: 99  ISEVELALRAKSNARLIAITGTNGKSTCTALLAHCLTEAGAKIAVGG----NIGDAACSL 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             P    + I EL    L      T  + P   V+  I P HL    G++   +AK  + 
Sbjct: 155 EDPGTNGYIILELSSYQL----ETTPSLAPDFGVVLNITPDHLDRHGGMDGYVAAKQLMV 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHA--LGIKTIYSFGKSKNAD 257
                 G + L  DD++       + A  + +KT+ S    K  D
Sbjct: 211 TATRAGGHVILGSDDAYVRDFANTNVADTVTVKTVTSSDAPKGRD 255


>gi|153949929|ref|YP_001402343.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165928218|ref|ZP_02224050.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937849|ref|ZP_02226410.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008796|ref|ZP_02229694.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211992|ref|ZP_02238027.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401224|ref|ZP_02306724.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422021|ref|ZP_02313774.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426494|ref|ZP_02318247.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025732|ref|YP_001722237.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186894045|ref|YP_001871157.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|270487851|ref|ZP_06204925.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294502644|ref|YP_003566706.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
 gi|152961424|gb|ABS48885.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165914261|gb|EDR32877.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919829|gb|EDR37130.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992135|gb|EDR44436.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206738|gb|EDR51218.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960158|gb|EDR56179.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049249|gb|EDR60657.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054592|gb|EDR64400.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752266|gb|ACA69784.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697071|gb|ACC87700.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|262364621|gb|ACY61178.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis D182038]
 gi|270336355|gb|EFA47132.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294353103|gb|ADE63444.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
          Length = 500

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 57/315 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    LSSI   YA  G               P  V+ G+ +   +
Sbjct: 131 IAVAGTHGKTTTTAM----LSSI---YAEAGLD-------------PTFVNGGLVKAAGT 170

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 171 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 229

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 230 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLRR 285

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           Q K + EV  +  G H A N    + + +    + +  ++AL  F   +G G+R+    N
Sbjct: 286 QDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 342

Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                    +G   L+D+ Y  +P  + A I       P    +RI +L         ++
Sbjct: 343 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWP---DKRIVMLFQPHRYTR-TR 397

Query: 387 SFHIDLAEVLSLYNI 401
             + D A VLS  ++
Sbjct: 398 DLYDDFANVLSQVDV 412


>gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 508

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 26/226 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
           ++GI  DSR + P   F  +K  + +  +  ++HA++ GA +++ +T      G+L    
Sbjct: 26  ISGIQSDSRLVKPGYLFCVLKKKNINETNKHMIHAIKNGAKIILYDTKQKFKNGTLKKII 85

Query: 83  --IPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             +P+   F +   L  +  L       +  T+I ITG+ GK+TT  +++   + +    
Sbjct: 86  NHVPIIYFFKLSKNLPQI--LKKYYHFENNFTLIGITGTNGKSTTTHIVSQWANLLNVKI 143

Query: 138 ACIGSY----NNHIGVPLTLARMPVDV----------DFGIFELGMSHLGEIRFLTHLVR 183
             +G+     NN++           ++          +   F + +S  G ++     + 
Sbjct: 144 GIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHRIEQLP 203

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             IA++T I P HL     ++   +AK   F       T+ +N DD
Sbjct: 204 FKIAILTNITPEHLDYHRTMDNYINAKKAFFFKYN-INTLIINADD 248


>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
 gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
          Length = 490

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+ ++   +    +  V  ++ DSR + P  AF  I G   DGH ++    +KGA  V
Sbjct: 5   DLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKGAKAV 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           +V   + A  G   + V  VDD   AL  ++ A
Sbjct: 65  IVEKQVEAPDG---VTVIHVDDTRYALALMSAA 94


>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
 gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
          Length = 534

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 153/392 (39%), Gaps = 54/392 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-V 85
           V G+S +S++I P   F  + G   DG +F   A++KGA   +V+  ++AS  + S   V
Sbjct: 41  VTGLSTNSQAIEPGMVFIGMPGTRVDGGEFWQSAIEKGAIAALVSPSVLASKPNTSDALV 100

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
               ++     +LA +  A+      I+ +TG+ GKTTT  ++   L+  ++  A +G+ 
Sbjct: 101 LTTSNIAKVCAELAASFYAQPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTL 160

Query: 143 YNNHIGV-PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAV 188
           Y    G   + +   P  +D    EL  +H  E + +   V  H             +AV
Sbjct: 161 YTRWPGYEKIAVHTTPFSIDLQA-ELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAV 219

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +++   AKA +F      G   +N  D +           G K I 
Sbjct: 220 FTNLTQDHLDYHKDLDDYFEAKALLFSPDYLKGHAIVNQKDPY-----------GQKLIE 268

Query: 249 SFGKSKNADFQLRKWKQ---CSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMT 299
             GK K   + +         S+  +  + + G       +       +G    +N+L  
Sbjct: 269 RIGKHKTLTYDITDRSADLYTSDLRYSPIGVSGTIHTPAGNASFSSPLVGQFNLENLLAA 328

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-KAAIS 358
           +G    L   +D  + AL  F    GR +R + +       +++    A P ++ +  IS
Sbjct: 329 VGAALHLGVSLDQIVVALPEFKGVPGRMERVQISTGMAAQAVVELDTVAEPDTVAEQDIS 388

Query: 359 V--------------LSQISPHGEGRRIAVLG 376
           V              L    P  EGR I V G
Sbjct: 389 VIVDYAHTPDSLENALKAARPFIEGRLICVFG 420


>gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 440

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 62/362 (17%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  + LT  ++        +G    +IG    L  +  D +  + E
Sbjct: 107 NAPVIAITGSNGKSTVTD-LTGEMAKAAGVKTAVGG---NIGFA-ALDLLEQDAELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IFE  E      +N
Sbjct: 162 LSSFQLET----TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAE---VCIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++    KT+ SFG  +  D+       C E+  +E  L   ++ ++  
Sbjct: 215 RDDK-------QTYPDVEKTLKSFGFDQ-GDY------GCIEKDGIEY-LAKNTVPLLAA 259

Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339
                +G H   N L+ + ++     ++D  +  L  ++     G  +RC   A N G  
Sbjct: 260 NELGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYN-----GLTHRCQVVADNNG-I 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396
             +++S   N AS  AA+S L       EG+    +  +G   +  ELS + H DL   L
Sbjct: 314 RWVNDSKATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFSELSPALH-DLN--L 365

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +Y        G   ++L    PRS+     ETM+     +  +L  GD+V++  S +C 
Sbjct: 366 MMYCFGE---DGDQFVSLD---PRSL---LCETMNEAIATLYPTLNKGDMVML--SPACA 414

Query: 457 FY 458
            +
Sbjct: 415 SF 416


>gi|325957331|ref|YP_004292743.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
 gi|325333896|gb|ADZ07804.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG      GVP        D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F   ++  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G +   DFQ    K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D     L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
           psychrophila LSv54]
 gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Desulfotalea psychrophila LSv54]
          Length = 456

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPL-T 152
           L +LA+AA +  +  ++AITG+ GKTT   ++   L +S K+ +        +IGVPL  
Sbjct: 102 LGELALAAPVLDR-PVVAITGTNGKTTVTSLVGDLLRASGKRVFV-----GGNIGVPLLD 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L     +VD  + E+    L     L     PHIA++  ++P HL     +    +AK  
Sbjct: 156 LLSSGDEVDVIVLEVSSFQLE----LAGDFSPHIALLLNLSPDHLDRHGDLAGYRAAKMH 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           +F+    T    ++ DD    L    S   G  + Y FG S  +D  +
Sbjct: 212 LFQKQGMTDIAIVSGDDPLCLL----SDGCGEASRYLFGFSAASDISV 255


>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
          Length = 503

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 52/382 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR + P   F AI+G  YDGH FI    Q+             +     +P  
Sbjct: 24  IQGITYDSRRVEPGFLFVAIRGLRYDGHSFI----QEAVARGAAAVVGERAPAVEGVPYV 79

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL  LA A      ++  ++ +TG+ GKTTT  ++   L +       IG+ +
Sbjct: 80  QVPSSRTALGLLASAFYGHPSARLVLVGVTGTNGKTTTTHLVRWVLEAAGHPTGLIGTVH 139

Query: 145 NHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRP----------------HI 186
           N I G  L + R  P   D       M   G    LTH+V                   +
Sbjct: 140 NIIGGRSLPVERTTPEAADLQKLLAAMRDAG----LTHVVMEVSSHALTLQRVAGCAFDV 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI-------FLNYDDSFFELLK 236
            V T +   HL   + +E+ A+AKA +F  L   E  GT+        +N DD +   + 
Sbjct: 196 GVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGTVKPGPKAAVINADDPWGTFMA 255

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQ 294
            +S A     + ++G  + AD   R      E   +   L  +  EV       G     
Sbjct: 256 DRSSA----PVITYGIRQAADVTARDV--VVEPGGVRFVLGTRDGEVPVRLRLTGRFNVY 309

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L   G    L  D  T  + L       GR +  R    Q F  L+D  Y   P  ++
Sbjct: 310 NALAAAGAGLALGIDPATVARGLESLPAVPGRLE--RIDRGQPFTVLVD--YAHTPDGLE 365

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
             +S + +++  G+GR + V G
Sbjct: 366 NVLSTVREMA--GQGRVLCVFG 385


>gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
 gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
          Length = 463

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 27/205 (13%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYA 138
           L IPV    D L AL      A LR     IA+ G+ GKTTT  ML ++L++  +  +YA
Sbjct: 92  LGIPVVHRSDALAAL-----MAGLRP----IAVAGTHGKTTTTSMLAVSLTALGLNPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G  +     P + A        G  E+ ++   E     H   P +A++  +   H +
Sbjct: 143 IGGDLD----APGSNAL------HGTGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEG-LEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNA 256
           N++ ++EI  +  E F G +   GT+ ++ D D   EL   +  A  ++T+ ++G+S +A
Sbjct: 193 NYASMDEIYESF-ETFAGKIVPGGTLVISADHDGAREL--TRRLAGSVRTV-TYGESADA 248

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM 281
           D ++        +S + V L G  +
Sbjct: 249 DVRVLSVVPQGLKSEVTVLLDGAEL 273


>gi|51595039|ref|YP_069230.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 32953]
 gi|150260409|ref|ZP_01917137.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|167469525|ref|ZP_02334229.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis FV-1]
 gi|218927752|ref|YP_002345627.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis CO92]
 gi|229837053|ref|ZP_04457218.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|229840444|ref|ZP_04460603.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843014|ref|ZP_04463164.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900779|ref|ZP_04515903.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|20532169|sp|Q8ZIE8|MURC_YERPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798206|sp|Q66EK4|MURC_YERPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082521|sp|A7FM65|MURC_YERP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082522|sp|Q1C215|MURC_YERPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082523|sp|Q1CMM6|MURC_YERPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082895|sp|A4TQ82|MURC_YERPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51588321|emb|CAH19929.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|115346363|emb|CAL19235.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis CO92]
 gi|149289817|gb|EDM39894.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|229682118|gb|EEO78210.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|229689890|gb|EEO81949.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696810|gb|EEO86857.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705996|gb|EEO92005.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|320016922|gb|ADW00494.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 491

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 57/315 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    LSSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----LSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLRR 276

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           Q K + EV  +  G H A N    + + +    + +  ++AL  F   +G G+R+    N
Sbjct: 277 QDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                    +G   L+D+ Y  +P  + A I       P    +RI +L         ++
Sbjct: 334 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWP---DKRIVMLFQPHRYTR-TR 388

Query: 387 SFHIDLAEVLSLYNI 401
             + D A VLS  ++
Sbjct: 389 DLYDDFANVLSQVDV 403


>gi|315038910|ref|YP_004032478.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
 gi|312277043|gb|ADQ59683.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG      GVP        D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F   ++  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G +   DFQ    K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D     L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
 gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
          Length = 495

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 47/256 (18%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL- 242
           P + V+T +   HL  F   E+  +      E +   GT+ +  DD     L  ++HA  
Sbjct: 185 PDVVVVTNVEADHLDFFGSEEKYVAVFDAFTERIRPGGTLVVCLDDPGSAALGQRTHAAL 244

Query: 243 ---GIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--- 288
              G++ ++ +G+  + D         +L  +K  +E   ++V+   ++ +V    I   
Sbjct: 245 RARGVR-VFGYGEGTHRDLAPDVTLIAELLDYKPRAEGGMLKVRFSDENRQVTERAIMLS 303

Query: 289 --GYHMAQNML-MTLGIVSI--LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             G HMA N +  T+ +V++   TA V   I++    H      +R++    +    + D
Sbjct: 304 VPGKHMALNAIAATIAVVNLGYPTAKVIAGIESFGGVH------RRFQLRGTEDGVRVFD 357

Query: 344 ESYNANPASMKAAIS-----VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           + Y  +P  ++A ++     V  Q  P   GR I        +   ++ F  + AE LSL
Sbjct: 358 D-YAHHPTEVRAVLTAAAEMVAKQAVP---GRVIVAF--QPHLYSRTEQFAAEFAEALSL 411

Query: 399 YNISHVWLSGFHVLAL 414
            +         HV+AL
Sbjct: 412 AD---------HVVAL 418


>gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine ligase [Janthinobacterium sp.
           Marseille]
 gi|166224696|sp|A6T2F7|MURC_JANMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151280263|gb|ABR88673.1| UDP-N-acetylmuramate--alanine ligase [Janthinobacterium sp.
           Marseille]
          Length = 465

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 151/382 (39%), Gaps = 50/382 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IAI G+ GKTTT  ++   L+   +  T+  IG   N  G    L  
Sbjct: 98  LAELMRLRRG---IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGLLNSAGANAKLGT 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL   + P I VIT I   H+  +    E++  A  E  
Sbjct: 154 -------GEFIVAEADESDASFLN--LSPVIEVITNIDADHMETYGHDFEKLKQAFIEFT 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + L   G   L  DD+    +  +      K I ++G  ++A  +    K         V
Sbjct: 205 QRLPFYGVAVLCIDDATVREIMPRIS----KLITTYGFHEDAQVRAIDAKAIDGHMHFTV 260

Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-- 331
             +G + M+V  +  G H  QN    + I   L        KAL+ F+   G G+R+   
Sbjct: 261 LQEGYAPMQVSLNQPGMHNVQNACAAIAIARELGVADHATQKALTEFN---GVGRRFTRY 317

Query: 332 -----CALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                 A+N    G F L+D+ Y  +P    A I+      P   GRR+ VL        
Sbjct: 318 GEISLPAVNDKPAGTFALVDD-YGHHPVETAATIAAARGAYP---GRRL-VLAFQPHRYT 372

Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL----- 435
            ++    D  +VLS  +   ++ V+ +G   +   D    +  +  +  +D +F+     
Sbjct: 373 RTRDLFEDFVKVLSTTDMLVLAEVYAAGEQPIVAADGRTLAHALRVAGKVDPVFVEKIAD 432

Query: 436 ---FIQSSLVDGDVVVVKSSNS 454
               I + + DGDVV+   + S
Sbjct: 433 MPATIMNIIKDGDVVITMGAGS 454


>gi|119026121|ref|YP_909966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|226711884|sp|A1A2F1|MURD_BIFAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118765705|dbj|BAF39884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 479

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 31/175 (17%)

Query: 71  NTDMVASIGSLSIPVFGVDD--VLGA-------LNKLAVAARLR-------SKATIIAIT 114
           NTDMV     ++ PVF      +L A       ++++ +A +LR         A  I IT
Sbjct: 55  NTDMV-----MTSPVFNPRTPFILEAQKRNIPVMSEVELAWQLRVNSNTTGKPAQWIGIT 109

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKT+T EM +  L++       +G    +IG  ++ A +    D    EL    L  
Sbjct: 110 GTNGKTSTTEMTSEMLTACGLAAPAVG----NIGKAVSHAAVDPANDVLCVELSSFQL-- 163

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               T+ +    A IT IA  HL    GIE  A+ KA++F  ++K   +  N DD
Sbjct: 164 --HFTYSLELDCAAITNIADDHLDWHGGIENYAADKAKVFHNVKK--ALVYNADD 214


>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 503

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----- 81
           + G+ +DSR+I     F A+KG   DG  +I +A++KGA  V++ +    +I        
Sbjct: 24  LTGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHL 83

Query: 82  -SIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             IPV  V+ +   L+ +A +          +I +TG+ GKTT   +L   +  + K  A
Sbjct: 84  NKIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSA 143

Query: 139 CIGSYNN 145
            +G+  N
Sbjct: 144 VMGTLGN 150


>gi|86137685|ref|ZP_01056262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
 gi|85826020|gb|EAQ46218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
          Length = 465

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 15/133 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L     ++AITGS GK+TT  +L   L S+ +     G+          + R  +D+D  
Sbjct: 116 LDQPPKVVAITGSNGKSTTVALLHHILESVGRDSQMAGN----------IGRGVLDID-P 164

Query: 164 IFELGMSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
             E G+  L    + T L R   P +A++T ++P HL   +G+    +AK  +F EG   
Sbjct: 165 PGEAGVVVLELSSYQTELARALTPDVAILTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPD 224

Query: 220 TGTIFLNYDDSFF 232
              I ++ D+  F
Sbjct: 225 RAIIGVDEDEGLF 237


>gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
          Length = 462

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 25/204 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYA 138
           L IPV    D L AL        LR     IA+ G+ GKTTT  ML ++L+++  + +YA
Sbjct: 92  LGIPVVHRSDALAALMD-----GLRP----IAVAGTHGKTTTTSMLAVSLAALGRRPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G  +     P + A        G  E+ ++   E     H   P +A+I  +   H +
Sbjct: 143 IGGDLD----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAIILNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           N++ +EEI  +       +   GT+ ++ D +   EL +    A  ++T+ ++G++++AD
Sbjct: 193 NYASMEEIHQSFETFVGRIVPGGTLVISADHEGARELTRRLDGA--VRTV-TYGEAEDAD 249

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM 281
            ++        +S + V+L G  +
Sbjct: 250 VRVLSVVPQGLKSEVTVELDGAPL 273


>gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           ATCC 23445]
 gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC
           23445]
          Length = 467

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  ++   + +  +     G    +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  +GT  +  DD+
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + +  + H  GI+ +    K K+      AD     W Q  E   +       S+E +
Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338
               G H AQN L    IV+ L+A     ++   +K+   + H  E  G+R       G 
Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSREEIHAGLKSFPGLAHRMEQVGRR-------GK 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
              +++S   N  +   A+S   Q
Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353


>gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 477

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 25/269 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLT 152
           + + A+ A L      IA+ G+ GKTTT  +    LS   +  T+         IG  L 
Sbjct: 102 MPRAAMLAELMRFRRGIAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLL 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKA 211
            A     +  G + +  +   +  FL   + P +AVIT I   HL N+ +    + +A A
Sbjct: 154 AAGANAKLGGGQWLVAEADESDGSFLR--LNPLMAVITNIDSDHLENYGNDFARVQAAFA 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E  + L   G   L  DD     L  K+     + + S+G S+NAD +     Q   +  
Sbjct: 212 EFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMR 267

Query: 272 MEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++L +G +  V     G H   N L    I   L  +  T  +AL  F    G G+R+
Sbjct: 268 FTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGVEPQTIARALENF---AGIGRRF 324

Query: 331 ----RCALNQGFFTLIDESYNANPASMKA 355
                   + G    + + Y  +P  ++A
Sbjct: 325 NDLGEVTTSTGARVQVVDDYGHHPRELEA 353


>gi|218780054|ref|YP_002431372.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
 gi|218761438|gb|ACL03904.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
          Length = 473

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 159/381 (41%), Gaps = 42/381 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIG-----SYNNHIGVPLTLARMPV 158
           S+ T I +TG+ GKTTT  ++   IA   +  T+   G       N+ +G    +     
Sbjct: 113 SQKTPIMVTGTHGKTTTSALIAWLIAAVGLDPTFMIGGILTNFKSNHQVGTGAYMVIEGD 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + D   F+ G       +FL +   P   V+T++   H   F  ++ + SA   + + L 
Sbjct: 173 EYDTAFFDKGP------KFLHYT--PSRTVLTSVEFDHADIFKDLDHVKSAFTSLVKNLP 224

Query: 219 KTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +    +F   DD+  ++L+     L   T Y FG  + A +++ + +     +++EV  +
Sbjct: 225 RESLLVFQEADDNIKDILQQADCWL---TPYGFG--EKAPWRIGEMRTEPPYTFIEVFRR 279

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+   E     +G H A N L  + +V  L   V+     L  F   +G  +R +    +
Sbjct: 280 GEFFAEFKVPLMGKHNALNCLAAIAVVDDLRIPVEGIQAGLETF---KGVARRQQVRGVK 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------I 390
              T++D+ +  +P +++  I     + P  +  R+A + +        + F        
Sbjct: 337 NNITVMDD-FAHHPTAVRETIKA---VKPFYDKGRVAAVFEPRTNSSRRKVFQDVYPTVF 392

Query: 391 DLAEVLSLYNISHVWL----SGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           D A+++ +   + +        F    L +D   R    H+   + G+  F+  +L  GD
Sbjct: 393 DDADIICIPQPTLLEKIPPEERFSSEKLVEDLKARGKDAHFFADVQGIIDFLAKTLEPGD 452

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           + ++ S+   GF  +   LL+
Sbjct: 453 LALIMSNG--GFENIHERLLD 471


>gi|145588356|ref|YP_001154953.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189029017|sp|A4SV75|MURC_POLSQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145046762|gb|ABP33389.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 478

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 124/307 (40%), Gaps = 53/307 (17%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V  N   V +  +  IPV     +LG L +L            IAI G+ GKTTT  ++ 
Sbjct: 74  VAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQG---------IAIAGTHGKTTTTSLVA 124

Query: 128 --IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A   +  T+  IG   N  G    L R     DF + E   S    ++       P 
Sbjct: 125 SVLAEGDLDPTF-VIGGKLNSAGANARLGRG----DFIVVEADESDASFLQLF-----PA 174

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALG 243
           + V+T I   H+  +   +  +  A  +  + +   G   L  DD+   +++   S    
Sbjct: 175 MEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCIDDANVRDIIPFVS---- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------IGYH 291
            + I  +G S++AD  +R     ++ + M   ++ ++  V  HG             G H
Sbjct: 231 -QPILRYGLSEDAD--IRASNVRADGTRMHFTVERRT--VRRHGNKPGPLNVTLNLPGLH 285

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFFTLIDESY 346
             +N L  +GI + L       IKALS F    G G+R++        + G FTLID+ Y
Sbjct: 286 NVRNALAAIGIATELGVGDQAIIKALSEF---SGVGRRFQRYGDIPLASGGKFTLIDD-Y 341

Query: 347 NANPASM 353
             +P  M
Sbjct: 342 GHHPVEM 348


>gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
 gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
          Length = 485

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 152 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 265 PTI-TYGRSEESNYQV 279


>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
 gi|169292202|gb|EDS74335.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
          Length = 452

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 60/213 (28%)

Query: 39  PQEAF-----FAIKGPHYDGHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           P E F     F IK P  + H  FIL   ++                  +IPV+      
Sbjct: 60  PDELFERDFDFVIKNPGINYHKPFILRLKKR------------------NIPVY------ 95

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-----HI 147
               ++ +A ++  K   I +TG+ GKTTT  ++   L          G Y N     ++
Sbjct: 96  ---TEIELAYQVAKKQHYIGVTGTNGKTTTVTLIDKILK---------GQYQNVHLAGNV 143

Query: 148 GVPLTLARMPVDVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+PL      + +D  + E       + MS+   +   T   +P+++ I  + P HL   
Sbjct: 144 GMPLC----DIVLDHNLLEEENHYIVIEMSNFQLLDIDT--FKPNVSTIINLTPDHLDYM 197

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           + ++E  ++K  I++   K     +N DD   +
Sbjct: 198 ASLDEYYASKTNIYKNTNKNDCFVVNLDDQVLD 230


>gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 689

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 33/301 (10%)

Query: 99  AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VP- 150
           AV+AR+     S+ T+I ITG+ GKTTT  +   AL +  +    +G+    +    VP 
Sbjct: 116 AVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALRAAGRVVGLVGTVEIRVDGTVVPS 175

Query: 151 -LTLARMP-------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV--ITTIAPAHLSNF 200
            LT    P       V  + G+  + M        L  +   H AV   T ++  HL   
Sbjct: 176 SLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALGRVDGCHFAVGGFTNLSQDHLDYH 235

Query: 201 SGIEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
             ++E  +AKA +FE    T      +  DD +       +      T  +   +  AD+
Sbjct: 236 RTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRAADVAAQG-AATPITVSTTGPADW 294

Query: 259 QLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            + +        Q+ +     G   E+     G +   N L+ + +      DVDTA+  
Sbjct: 295 SVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVANALLAVAMTVAAGTDVDTAVAG 354

Query: 317 LS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L+ V  P    G+  +    Q F  ++D  Y   PA+++A   VL+ +     GR   VL
Sbjct: 355 LAHVAVP----GRLEKVERGQEFLAVVD--YAHKPAAVEA---VLATLGAQTRGRLAVVL 405

Query: 376 G 376
           G
Sbjct: 406 G 406


>gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + +  + ++ +AA++ + A II +TGS GKTTT  M+T  L+  +K      + N  
Sbjct: 92  AVSEKMPIITEVELAAQM-TDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGN-- 148

Query: 147 IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IGV  T   +    D  I  EL    L  I+ L     PH+AV+T I   HL      + 
Sbjct: 149 IGVSATETALKSTADDTIVMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKN 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +AK  I           +N+D   +  L  +S A
Sbjct: 205 YVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSRA 240


>gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
 gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
          Length = 490

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 152/370 (41%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   DM  +I    +PV 
Sbjct: 24  ITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRGAVAIIAGKDM--AIADAGVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 82  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 369 TTGRVIVVFG 378


>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 487

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 144/365 (39%), Gaps = 45/365 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR + P   F  I G   DGH F   AV+KGA  ++    +   +  + +   
Sbjct: 23  ITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGAVAILAEKPVDVEVPVVRVK-- 80

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                  A+  LA A   +   K  +I +TG+ GKTT   ++     S  K    IG+  
Sbjct: 81  ---STKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIE 137

Query: 145 NHIG---------VP--LTLAR-----MPVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG          P  LTL +     +  +V+  + E+  SH   LG +    H     
Sbjct: 138 IRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMMEVS-SHALDLGRV----HGCDFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           +AV + +   HL     +E+   AK  +F  L       +     LN DD+  E     +
Sbjct: 193 VAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKFAVLNADDAATEEYIKNT 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    T+ ++G  +++D +    +  +  +  ++    +++ V    IG     N+L  
Sbjct: 253 AA----TVITYGIDRDSDIRATNIQITNSGTTFDLTTPTETVRVEMKLIGKFSVYNVLAA 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +    +   ++ + V    EG   R+     +  FT+I + Y   P S++  +  
Sbjct: 309 TASCLVSGIPLSVIVEEIKVL---EGVSGRFEVVDAEQDFTVIVD-YAHTPDSLENVLKT 364

Query: 360 LSQIS 364
           + + +
Sbjct: 365 VKEFA 369


>gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + +  + ++ +AA++ + A II +TGS GKTTT  M+T  L+  +K      + N  
Sbjct: 92  AVSEKMPIITEVELAAQM-TDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGN-- 148

Query: 147 IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IGV  T   +    D  I  EL    L  I+ L     PH+AV+T I   HL      + 
Sbjct: 149 IGVSATETALKSTADDTIVMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKN 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +AK  I           +N+D   +  L  +S A
Sbjct: 205 YVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSRA 240


>gi|116491263|ref|YP_810807.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
 gi|122276555|sp|Q04EI0|MURC_OENOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116091988|gb|ABJ57142.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 35/269 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKT+T  +L   LS+ + T   IG                  V  G+F     
Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGD----------------GVGKGVFSSKYF 147

Query: 171 HLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +    +  H     P +A+IT I   H   +  ++++ SA +E  + ++K   IF   +
Sbjct: 148 VVEADEYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGE 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +K K+       I S+G  K+  F      + +E S+  +   G+ +      I
Sbjct: 206 DPEIKKIKPKT-----ARILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATI 260

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESY 346
            G H   +    + +   L   VD   K L  +     +G + R  ++Q    T++D+ Y
Sbjct: 261 EGDHGILDTTAAIAVADYLGFSVDQIQKGLLTY-----QGAKRRFNISQVADLTIVDD-Y 314

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  +KA I    Q  P+   R +AV 
Sbjct: 315 AHHPTEIKATIDAARQKFPN--KRLVAVF 341


>gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 475

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 164/390 (42%), Gaps = 53/390 (13%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GK  TT+     +A + +  T+  IG   N  G    L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLVTSVLAEAGLDPTF-VIGGRLNSAGANAKLGQ-------GEYIVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P +AV+T I   H+  +      + SA  +    +   GT  L  
Sbjct: 160 EADESDASFLNLL--PVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAILCT 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------ 280
           D+ +  E+L   +       + S+G S++A  Q+R     ++   M  ++Q ++      
Sbjct: 218 DNPAIREILPDVT-----CPVTSYGFSEDA--QVRAVDVRADAGRMRFRVQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALN 335
           ++VV +  G H   N L  + +   L    +  ++AL+ F   +G G+R++      A  
Sbjct: 271 LDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQF---KGVGRRFQRYGELPAQG 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTLI E Y  +P  M A ++      P   GRR+ +             F  D  +V
Sbjct: 328 GGTFTLI-EDYGHHPVEMTATLAAARGAFP---GRRLVLAFQPHRYSRTRDCFE-DFVKV 382

Query: 396 LSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           +   +   ++ V+ +G   +   D  +L R++ V       + + +  L   I  +   G
Sbjct: 383 MGSADAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARSG 442

Query: 445 DVVVVKSSNSCGFY--RLINLLLEEFPAIQ 472
           DVV+   + S G    +++ +L  E PA+Q
Sbjct: 443 DVVLCMGAGSIGAVPAKVVEMLRAEAPAVQ 472


>gi|329848047|ref|ZP_08263075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
 gi|328843110|gb|EGF92679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
          Length = 475

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R++   +AITG+ GK+TT  ++   L S  K     G  N  IGV L L  M     + +
Sbjct: 113 RNRPKTVAITGTNGKSTTTALIGHILKSAGKNVHVGG--NIGIGV-LDLDEMQPGAVY-V 168

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L     L+   +P ++++  ++P HL    G++   +AK  IF   EK  T  
Sbjct: 169 IETSSYQLD----LSLTFKPDVSILMNLSPDHLDRHGGMDGYIAAKKRIFMNQEKGQTAV 224

Query: 225 LNYDDSF 231
           +  DD +
Sbjct: 225 IGADDDY 231


>gi|294791080|ref|ZP_06756238.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
 gi|294458977|gb|EFG27330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
          Length = 499

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 26/166 (15%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------ATIIAITGSVGKTTTK 123
           ++D +  + +  IP+         ++++  A ++R++       A  I ITG+ GKT+T 
Sbjct: 61  HSDFLTRVAARGIPI---------ISEVEFAWQIRARNPISGQPAAWIGITGTNGKTSTT 111

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L +       +G    +IGVP++ A +  +    + EL    L      T+ ++
Sbjct: 112 EMTAEILQAASLAAPAVG----NIGVPVSQAAVDENNQALVVELSSFQL----HYTYSLQ 163

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              A IT +A  HL    G E   + KA +++ ++K   +  N DD
Sbjct: 164 LEAAAITNLADDHLDWHGGFENYVADKARVYQHVKK--ALVYNADD 207


>gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
 gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GK+TT  +++  L+S    Y   G    +IGVP   A+   D    + EL   
Sbjct: 107 IAVIGTNGKSTTTALISHILNSNGLDYPVAG----NIGVPALKAKNSKDG--YVIELSSF 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  ++  T      IAV+  I P HL     +     AK++IF  ++K     +N D+ 
Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHKDMNGYIKAKSKIFNRMDKNSYAVINIDND 216

Query: 231 F 231
           +
Sbjct: 217 Y 217


>gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 477

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 148/376 (39%), Gaps = 50/376 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
           L++  + A L +  T IAI G+ GKTTT  M    L          IG   + +G    L
Sbjct: 92  LSRAQMLAMLMAGKTQIAIAGAHGKTTTTSMTASVLRQGGLAPSVVIGGIVDSLGGNAVL 151

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D+ + E   S   +  FL  +  PH+AV+T +   HL ++  +  I    A+ 
Sbjct: 152 G----PGDYFVAEADES---DGSFL--VFNPHVAVVTNVDREHLDHYRDLAHIQEVFAKF 202

Query: 214 FEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
              ++  G +   YDD +   LL      L    + S G  + A  Q+         S+ 
Sbjct: 203 IHQVQPGGAVVACYDDPNLRPLLYGVQGRLITYGLKSGGNYRAAHIQV----TGGGSSYT 258

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            ++ + K  ++     G+H   N L    +   L  D       L+    + GR KR R 
Sbjct: 259 LLRQEKKLGQITIPLAGWHYVANSLAAAAVGFALGLDFRDIQAGLA----QTGRIKR-RF 313

Query: 333 AL---NQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
            +   NQG  T+ID+ Y  +P  ++A +  ++Q            PH   R  A+L D  
Sbjct: 314 EIKGENQG-VTVIDD-YGHHPTEIRATLDAMAQAFAGRRLVVAFQPHRFSRTQALLPDFF 371

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH------VHYSETMDGL 433
           ++           A++L L +I        H L+ +D L R I       V Y    + L
Sbjct: 372 DI--------FQQAQLLFLTDIYSAGERVIHGLSGRD-LYRGIREAGHTAVQYVGNREEL 422

Query: 434 FLFIQSSLVDGDVVVV 449
              + + L  GDV+V 
Sbjct: 423 APELWNYLRRGDVLVT 438


>gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus
           EPS]
 gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           EPS]
          Length = 517

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 146/385 (37%), Gaps = 69/385 (17%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +   + F A  G   DG   +  A+ +GA   +V  + V + G      FG DD +
Sbjct: 25  DSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVDAFG------FGEDDRI 78

Query: 93  GALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSIKKT------- 136
            +   L  A    + A          ++A+TG+ GKT+T   L  +LS+++         
Sbjct: 79  ASYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRAMR 138

Query: 137 ------------YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELG 168
                        A +G+    IGVP  L                 R  V+  FG   + 
Sbjct: 139 PDGTTERSAPSPCAVMGTLG--IGVPPDLTYTGLTTPDPVMMQGELRALVERGFGACAIE 196

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLN 226
            S +G         +  +AV T     HL     ++    AKAE+F   GL       +N
Sbjct: 197 ASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAELFRWPGLRAA---VIN 253

Query: 227 YDDS-----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-S 280
            DD         L+ A   AL + T+ + GK   A    R     ++     V  QG  S
Sbjct: 254 IDDMHGASLCANLVDAGIGALDVWTVSAGGKP--ARLVARDIGYDAQGLQFSVTEQGSVS 311

Query: 281 MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +E +  G IG +   N+L  LG +  L   +  A+ A +      GR +R     N    
Sbjct: 312 VERLSTGLIGQYNVANLLGVLGTLRALGLSLSRAVAACANLTSVPGRMERVSVGGN-APL 370

Query: 340 TLIDESYNANPASMKAAISVLSQIS 364
            ++D  Y   P ++  A++ L  ++
Sbjct: 371 AVVD--YAHTPDALDKALAGLRPLA 393


>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 54/266 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GK+T  ++  +   +   T    G    +IGVP  L  +  DVD  + EL  
Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALELLEQDVDLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +  +AK  IF+  E      +N DD
Sbjct: 165 FQLET----TLSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDHAE---LAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                   +++      + +FG               S++    +++ G    ++ HG  
Sbjct: 218 Q-------ETYPEVEMPVVTFG---------------SDEQAYGLEVDGSRTWLLDHGQR 255

Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335
                    +G H   N L+ L ++     D   A+ AL     K   G  +RC   A N
Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310

Query: 336 QGFFTLIDESYNANPASMKAAISVLS 361
           +G    +++S   N AS  AA+S L 
Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGLE 335


>gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense
          MSR-1]
          Length = 112

 Score = 45.1 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 8  HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
          H+L   I G+         +  I+ DSR + P   FFA+ G   DG  FI  AV +GA +
Sbjct: 2  HNLADLIPGNHTA---NPLITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVV 58

Query: 68 VVVNTDMVASIGS 80
          +V  T   A  G+
Sbjct: 59 IVAETGTQAETGT 71


>gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 537

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 170/396 (42%), Gaps = 47/396 (11%)

Query: 2   NPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            P+ T    L A+ G  +    G      V G+ + ++ I   + F A+ G    G +F 
Sbjct: 24  QPVRTTVSALAALAGARVEAPTGTAEHVIVTGVDLRAQGIVEGDLFAALPGARAHGAEFA 83

Query: 58  LHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIA 112
             A+ +GA  ++ +     +V+++GS  +PV   DD  G L +L+  +  R   K  +I 
Sbjct: 84  ADALARGATAILTDEAGFALVSALGS-DMPVLVHDDPRGVLGELSATIYGRPSEKMQVIG 142

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVP--LTLARMP-------VDV 160
           ITG+ GKTTT  ++  AL++  +T   +G+    +    VP  LT    P       V +
Sbjct: 143 ITGTSGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGRRVPSALTTPEAPQLHALFAVML 202

Query: 161 DFGIFELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           + GI  + M   SH   LG +      VR  +   T ++  HL      E+  +AKA +F
Sbjct: 203 EQGIDTVVMEVSSHALSLGRV----DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLF 258

Query: 215 EGLEKTGT--IFLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKW--KQCS 267
                       +  DD + + +      +H++ + T+ +   S+ A +           
Sbjct: 259 AADSSVHAQHAVICIDDVWGQRMADVARGAHSI-VTTVATTPDSEGAVWTAGPATVSPSG 317

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGR 326
            Q++     +G +++V     G +   N  + + + + L  D   A++ ++ V  P    
Sbjct: 318 SQTFALTTAEGTTLDVELRLPGQYNVANASLAVALCAALGVDPRDAVEGIAGVDVP---- 373

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           G+  R    Q F  ++D  Y   PA+++A I+ L +
Sbjct: 374 GRVQRIDRGQDFLAVVD--YAHKPAAVEAVIATLRE 407


>gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
 gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
          Length = 453

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 39/334 (11%)

Query: 102 ARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A+ RS  A +IAITG+ GK+T    +T  +  I K          +IG+P+ L  +   V
Sbjct: 103 AQARSAHAKVIAITGANGKST----VTTLVGEICKAAGFKTVVAGNIGLPV-LDVINDAV 157

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T+ +    A +  I+  H+  ++ ++  A+AKA IF    + 
Sbjct: 158 DVYVLELSSFQLET----TYSLAADAATVLNISADHMDRYADMQAYANAKARIF---TRA 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGK 279
           G   LN DD++   + A+  A   +  +     ++A DF L      + ++W+  + Q K
Sbjct: 211 GLQVLNADDAWSRGMAAEGVA---QLTFGLDAPRSAQDFGLL---HDAGEAWL-ARGQRK 263

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            M V    I G H A N L  L + ++L  D   A++AL  F   +G   R +   +   
Sbjct: 264 LMPVADLNITGLHNAANALAALALCTVLDIDEVVALQALRDF---KGLPHRVQWVADIDG 320

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +  D+S   N  +  AA+        HG  R++ ++      G+   +    +A+    
Sbjct: 321 VSFYDDSKGTNVGATVAAL--------HGLNRKLVLIAGGDGKGQDFAALRAPVAK---- 368

Query: 399 YNISHVWLSGFHVLALKDALPRS-IHVHYSETMD 431
            +   V L G     + DAL  S + + Y +T++
Sbjct: 369 -HARAVVLIGRDAGVIADALQESGVLLEYGDTLE 401


>gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
 gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
          Length = 467

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 160/376 (42%), Gaps = 57/376 (15%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A + +  T+  IG   N  G     AR+ +  D+ + E  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGAN---ARLGLG-DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFL 225
            S   +  FL  L  P +AV+T I   H+  +    + A+ K    + L +    GT  L
Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMETYG--HDFANLKKAFVDFLHRMPFYGTAIL 215

Query: 226 NYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---- 280
             DD +  E++   S  +   T Y FG+    D Q+R        + M    Q ++    
Sbjct: 216 CTDDPAVREIVPQVSCPI---TSYGFGE----DAQVRAVNVRPVGAQMHFTAQRRNGVTL 268

Query: 281 --MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----- 332
             +EVV +  G H   N L  + +   L    DTA+ KAL+ F   +G G+R++      
Sbjct: 269 PDLEVVLNLAGEHNVLNALSAIAVAVELNVP-DTAVQKALAEF---KGVGRRFQSYGDVP 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A   G FT+I E Y  +P  + A ++      P   GRR+ +             F  D 
Sbjct: 325 AKGGGHFTVI-EDYGHHPVEVAATLAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DF 379

Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441
            +V+   +   ++ V+ +G   +   D  +L R++ V       +   +D +   I  + 
Sbjct: 380 VKVIGQADAVLLAEVYAAGETPIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNA 439

Query: 442 VDGDVVVVKSSNSCGF 457
           + GDVV+   + S G 
Sbjct: 440 LGGDVVMCMGAGSIGL 455


>gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
          Length = 480

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 137/322 (42%), Gaps = 45/322 (13%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA ++VV++ +      VAS     IPV    ++L  L       R R  
Sbjct: 64  FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 117

Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +++   A   +  T+         IG  L  A     +    +
Sbjct: 118 ---IAVAGTHGKTTTTSLISSVFAAGGLDPTFV--------IGGRLNAAGTNAQLGASRY 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   
Sbjct: 167 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 224

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
           +  DD    E+L   +     +   ++G S++AD +    +Q   ++W  V + + + ++
Sbjct: 225 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 280 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 336

Query: 339 FTLIDESYNANPASMKAAISVL 360
             L+D+ Y  +P  + A I  +
Sbjct: 337 VMLVDD-YGHHPREVAAVIKAI 357


>gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ]
 gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ]
          Length = 488

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 148/366 (40%), Gaps = 43/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 121 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGS-------SRYLIA 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H+  + G    +     +    L   G   L  
Sbjct: 173 EADESDASFL-HL-QPMVAVVTNIDADHMDTYEGDFSRLKKTFVDFLHNLPFYGLAVLCV 230

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G  ++AD +    +Q   +++  V  Q ++ +E+  
Sbjct: 231 DDPVVREILP-----LVARPTITYGLGEDADIRAVDIRQAGMRTYFTVLRQERAPLEMSV 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I      D    ++ LS F   +G G+R++      +  G   L
Sbjct: 286 NMPGVHNVLNALATIAIACDEGIDDTAIVQGLSGF---QGVGRRFQVYGELQIEGGGVML 342

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A +  +    P    RR+ ++         ++  + D  ++LS  N+
Sbjct: 343 VDD-YGHHPREVAAVLKAVRGGWPD---RRLVMVYQPHRFTR-TRDLYEDFVQILSDANV 397

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
                V+ +G   +   D  +L RSI         Y E    +   ++  L  GD+++ +
Sbjct: 398 LLLMEVYPAGEEPIPGADSRSLCRSIRQRGQLDPIYVERGADIAPLLKPLLRPGDILLCQ 457

Query: 451 SSNSCG 456
            +   G
Sbjct: 458 GAGDIG 463


>gi|329118775|ref|ZP_08247473.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465122|gb|EGF11409.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 484

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 147/361 (40%), Gaps = 44/361 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +A + +  T+         IG  LT +     +  G + + 
Sbjct: 123 IAIAGTHGKTTTTSLTASVLAAAGLDPTFV--------IGGKLTASGTNARLGKGEYIVA 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 175 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCA 232

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D      +  K      K   ++G  ++AD +    +    Q    V+++ K  E +   
Sbjct: 233 DSEHVRAILPKVS----KPYTTYGFGEDADIRAENIESDGAQMKFAVRVRMKGHEPLDFP 288

Query: 288 I-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           +     G H   N L  +G+     AD     + L  F    G G+R++      L  G 
Sbjct: 289 VTLNLPGRHNVLNALAAIGVALECGADTAAIQQGLQNF---GGVGRRFQSYGEIPLKTGG 345

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A ++      PH   RR+ VL         ++    D A+VL+ 
Sbjct: 346 SALVIDDYGHHPTEMAATLAAARGAYPH---RRL-VLAFQPHRYTRTRDLFDDFAKVLNT 401

Query: 399 YN---ISHVWLSGFHVLALKD-ALPRSIHVH------YSETMDGL-FLFIQSSLVDGDVV 447
            +   ++ V+ +G   L     AL R++  +      Y   ++ +  + + + L DGDV+
Sbjct: 402 VDTLVLTDVYAAGEDPLPEDSRALARNVRAYGKVEPLYCADVNEMPAMLLDTVLHDGDVL 461

Query: 448 V 448
           +
Sbjct: 462 L 462


>gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 16/167 (9%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L  I++     +P +  I  I P HL+  + +E    AK  IFE +++ G  
Sbjct: 163 VLEISSFQLETIKYF----KPKVGCILNITPDHLNRHATMENYVKAKMRIFENIDEAGYT 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LNYD+     L      L  + +  F K+KN      K     E++ +     GK+ EV
Sbjct: 219 VLNYDNGITRDL----IGLAKRNVIVFSKNKNH----FKNMVFVEENKIYFTFGGKTQEV 270

Query: 284 VHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +        G H  +N L  +          DT    L  F   E R
Sbjct: 271 MKKDEIFIPGEHNLENALAAIACTLPFGVAKDTIKDVLKTFKGVEHR 317


>gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda
           FL6-60]
          Length = 438

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + +          +IGVP  L+ +  +    + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMARAAGWQVGVGGNIGVP-ALSLLKHECRLYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L      T  +R   A I  ++  H++ +  G+++  +AK  I+E      T  
Sbjct: 158 ELSSFQLET----TSSLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYENAR---TCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    L    H    + + SFG     D+ L + +    + W+ V+    L  K 
Sbjct: 211 VNADDA----LTMPIHGADTRCV-SFGVDV-GDYHLNRQQG---EIWLRVRGEKILNTKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     ++++AL+ F    G   R++  L      
Sbjct: 262 MQLT----GMHNYTNALAALALADAVGLPRASSLRALTTFR---GLAHRFQLVLEHSGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA+  L
Sbjct: 315 WINDSKATNVGSTEAALKGL 334


>gi|327184054|gb|AEA32501.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1118]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG      GVP        D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F   ++  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G +   DFQ    K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D     L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 441

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 38/259 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GK+T  + LT  +++       IG    +IGVP  L  +  D +  + EL  
Sbjct: 112 VVAITGSNGKSTVTD-LTGVVANAAGVKTAIGG---NIGVP-ALELLDQDAELYVLELSS 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     L+       A    ++  H+  +  +E    AK  IF   E+  T  +N DD
Sbjct: 167 FQLETTSSLSL----KAAAFLNLSEDHMDRYDDMEGYRQAKLRIF---EQAQTCIVNADD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVH 285
                 K  +       +  F   K+ +F ++    +   C + + +   L    + +V 
Sbjct: 220 PATYPDKKDA------PLVEFSLEKSCEFHVKVVEGREYLCHQDAKI---LASDELSLV- 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342
              G H   N L+ L ++     D+   I AL  ++     G  +RC   A N G    +
Sbjct: 270 ---GRHNVANALVVLALLEQAGVDISLGIDALKSYN-----GLTHRCQVVADNNG-VKWV 320

Query: 343 DESYNANPASMKAAISVLS 361
           ++S   N AS  AA+S LS
Sbjct: 321 NDSKATNVASTLAALSGLS 339


>gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
 gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
          Length = 508

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 96  NKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
            ++ +A RLR K    A  IAITG+ GKTTT ++    LS+       +G    +IG+P+
Sbjct: 110 TEIELAWRLRDKTGTPAEWIAITGTNGKTTTAQLAAHILSTAGFRAGAVG----NIGIPV 165

Query: 152 TLA-RMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             A R P   DF + EL    L G  R     + P  +V   IA  HL         A+A
Sbjct: 166 LDAIRYPDGFDFLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDWHGSRAAYANA 225

Query: 210 KAEIF 214
           KA ++
Sbjct: 226 KATVY 230


>gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida
           GA99-3549]
          Length = 479

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 20/229 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ + +DSR    + AF A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 23  IDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFEDQKC----VF 78

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
            I  P         +D       +S+  + + L   V  H             +A+ + +
Sbjct: 139 GI-YPDLKESTHTTLDILSLYQTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  HL     ++    AKA++F+  ++     +N DD + + L   + A
Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRLCNMTQA 245


>gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
 gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
          Length = 472

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 169/440 (38%), Gaps = 93/440 (21%)

Query: 63  KGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T + A      +   L IPV    ++L  L       R R     IA+ G+
Sbjct: 62  EDASVVVVSTAISADNPEIQAAHELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       I   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 113 HGKTTTTAM-------ISGIYAQAGL-------------DPTFVNGGLVKSAGTHARLGS 152

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +AV+T I   H+  + G  E +          L   G 
Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGNFETLKDTFINFLHNLPFYGR 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
             +  DD     L  +      + + ++G S++AD ++ K++Q   Q +  +  +    +
Sbjct: 212 AVMCIDDPVIRSLLPRVS----RYVTTYGFSEDADVRIVKYEQKGNQGFFTIARENMPEL 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335
            VV +  G H A N    + + +    D    + AL  F   +G G+R+    N      
Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDQHILSALVEF---QGTGRRFDFLGNYSLRHV 324

Query: 336 ---QGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMG 382
              +G   L+D+ Y  +P  + A I           ++    PH   R   +  D   + 
Sbjct: 325 NGKEGEVMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYSRTRDLYDDFAHV- 382

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLF 436
            LSQ   +D+  +L +Y      + G    A   +L R+I         Y    + +   
Sbjct: 383 -LSQ---VDVLLMLEVYPAGEKPVPG----ADSRSLCRTIRGRGQLDPIYVAEPEQVAQI 434

Query: 437 IQSSLVDGDVVVVKSSNSCG 456
           +  +L D D+++V+ + + G
Sbjct: 435 LAQALEDNDLILVQGAGNIG 454


>gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 461

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    + +IAITGS GKTTT   L   L +     +  G+    +   + LA
Sbjct: 92  ISEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                  + + EL    L  +    +  R HIA++  I P HL  +   +E  A AK  I
Sbjct: 152 PHA----YYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHQMELYARAKMRI 203

Query: 214 FEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKSKN 255
            +  E T   F+++  DD    LLK      G +  +S   S +
Sbjct: 204 TQNQEPTD-YFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSD 246


>gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 461

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    + +IAITGS GKTTT   L   L +     +  G+    +   + LA
Sbjct: 92  ISEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                  + + EL    L  +    +  R HIA++  I P HL  +   +E  A AK  I
Sbjct: 152 PHA----YYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHQMELYARAKMRI 203

Query: 214 FEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKSKN 255
            +  E T   F+++  DD    LLK      G +  +S   S +
Sbjct: 204 TQNQEPTD-YFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSD 246


>gi|251781817|ref|YP_002996119.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390446|dbj|BAH80905.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 443

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 40/279 (14%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE   S  
Sbjct: 108 VAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE---SDE 155

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E  F+ +   P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D   
Sbjct: 156 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQ-- 209

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291
           EL K  ++A     IY +G  +  DF      + +  S   V+  G+ +   H    G H
Sbjct: 210 ELKKITANA----PIYYYGFEEGNDFVASDIARTTHGSDFTVKHDGQIIGRFHVPAYGRH 265

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANP 350
              N    +  + +   D++   + L  F    G  +R+   L N+   T+I + +  +P
Sbjct: 266 NILNATAVIANLFVAGIDMELVAEHLKTF---SGVKRRFTEKLINE---TIIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
             + A I    Q            PH   R IA+L D  
Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFA 358


>gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
          Length = 493

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 58/387 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMV 75
           Q  + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +        T++ 
Sbjct: 20  QATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAAGAQLAATELG 79

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123
           AS  +L I     DD   AL + A         T++A+TG+ GKT+              
Sbjct: 80  ASEAALVIS----DDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQIWTLLGH 135

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEIRFLT 179
           E + +  + ++  ++   ++      P+TL R   +    G+    M   SH  + R L 
Sbjct: 136 EAINLGTTGVEGAWSAPLAHTTP--EPITLHRALAEAARQGVTHAAMEASSHGLDQRRLD 193

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAK 238
             V    A  T     HL   +  E+  +AKA +F   L +  T  +N D      + A 
Sbjct: 194 G-VTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDMAAI 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IG 289
           + A     I + G+  + D  L           ++V   G+ +  +HHG         IG
Sbjct: 253 AEARNCPVI-TVGRD-SGDLHLGN---------IQVDSTGQVVCFMHHGTQYVRRLGLIG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A+N+++   +V     D       L       GR  +     + G    +D  Y   
Sbjct: 302 SFQAENVMLAAALVIACGEDPQHVFDTLEHLSTVRGR-MQLAGTRDNGATVFVD--YAHT 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P ++  A+  L    PH  GR IA++G
Sbjct: 359 PDAIATALKAL---RPHVVGRLIAIVG 382


>gi|238650901|ref|YP_002916757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
 gi|238624999|gb|ACR47705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
          Length = 500

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S +IP+    D+L A +K             IAITG+ GK+TT  +++  L+S    Y  
Sbjct: 85  SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G    +IGV    A+     D  + EL    L  ++  T      IAV+  I P HL  
Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +    +AK++IF+ +++     +N D+ +
Sbjct: 186 HQDMPCYIAAKSKIFDRMDQESYAVINIDNDY 217


>gi|21241550|ref|NP_641132.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|23821877|sp|Q8PPA7|MURC_XANAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21106901|gb|AAM35668.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 477

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q        ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPCMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    DT  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 458

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +KK Y  +    N IG+P   T+     D  F + E+    L  I++     +P +  I 
Sbjct: 132 LKKQYEDVVVCGN-IGLPFIDTIETSSEDTIF-VLEISSFQLETIKYF----KPKVGCIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL+    +E    AK  IFE +++ G   LNYD++    L      L    +  F
Sbjct: 186 NITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDNNITRDL----IGLAKGNVIVF 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306
            K+K   F+   +    E   +    +GK+ EV+        G H  +N L  +      
Sbjct: 242 SKTK-TQFENVVF---VENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPF 297

Query: 307 TADVDTAIKALSVFHPKEGR 326
             + DT  + L  F   E R
Sbjct: 298 GIEKDTIEQVLKTFRGVEHR 317


>gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
 gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
          Length = 432

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 32/263 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +AITG+ GKT+T  +L   + S K T   IG   + +G          + ++ +FE  
Sbjct: 102 TNVAITGAHGKTSTTGLLAHVMQSAKPTSYLIGD-GSGMGKE--------NSEYFVFE-- 150

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL++   P  A++T I   H   FS I+++  A   +   L+    I   
Sbjct: 151 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFSDIDDVFDAFQNM--ALQVKKAIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD     ++AK     +  +Y +G ++  DFQ R   + +E +  +V ++    +  + 
Sbjct: 204 GDDEHLPKIQAK-----VPVVY-YGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      DV+    AL+ F    G  KR       G   LID+ 
Sbjct: 258 PAYGNHNVLNSLAVIALCHYEAIDVELIKGALTTF----GGVKRRFNEKVVGEQVLIDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGE 368
           Y  +P  ++  I    Q  P  E
Sbjct: 313 YAHHPTEIEVTIEAARQKYPDRE 335


>gi|34580522|ref|ZP_00142002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
 gi|28261907|gb|EAA25411.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
          Length = 500

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S +IP+    D+L A +K             IAITG+ GK+TT  +++  L+S    Y  
Sbjct: 85  SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G    +IGV    A+     D  + EL    L  ++  T      IAV+  I P HL  
Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +    +AK++IF+ +++     +N D+ +
Sbjct: 186 HQDMTCYIAAKSKIFDRMDQESYAVINIDNDY 217


>gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 477

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    I +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLALLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L    +T  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVASETIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
          Length = 467

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G + +A  Q+R     +    M    ++     +++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVEARDGKMHFTAMREDAAPLDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337
             +  G H  QN L  + I + L        +AL+ F+    R +RY           +G
Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQTRG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +VLS
Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDV
Sbjct: 386 TVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAIVRDGDV 445

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 446 VITMGAGSIG 455


>gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 492

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 24/208 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKS 239
           P++AV+T I   HL +F G    A A  ++F+     L   G + +  DD     L  ++
Sbjct: 183 PNVAVVTNIETDHL-DFYG---SAGAYVDVFDAFVDRLAPGGALVVCVDDPGAAALARRT 238

Query: 240 HALGIKTI-YSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGI-G 289
             LGI+ + Y  G S   +     L  W+Q   ++  ++QL       +   V+   + G
Sbjct: 239 AELGIRVLRYGSGASLPGEPLAATLLSWQQQGTEAVAQIQLAPDLDPEQRPRVMRLSVPG 298

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQGFFTLIDESYN 347
            HMA N +  L     + A VD  +  L+ F   EG  +R+        G    + + Y 
Sbjct: 299 RHMALNAMGALLAALEIGAPVDAVLDGLAGF---EGVRRRFELVGTAGNGQPVRVFDDYA 355

Query: 348 ANPASMKAAI-SVLSQISPHGEGRRIAV 374
            +P  + A + +V + +   G+GR IAV
Sbjct: 356 HHPTEIVATLAAVRTLLEQSGDGRSIAV 383


>gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 115/290 (39%), Gaps = 31/290 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +++   +IAI+G+ GKTTT  M+   L           SYN  I V   + ++  +   G
Sbjct: 98  MKNFKNVIAISGTHGKTTTTSMIGYILKK--------ASYNPTILVGAFVKQLGGNFVIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G +
Sbjct: 150 SKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFL 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD   + + +K H      +      + AD        C++  + E  ++  + E+
Sbjct: 210 VANCDDKNVKDVISKLHT----QVVCISTKEKADI-FAGNISCND-GYYEFDVKNNNDEI 263

Query: 284 VHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + H      G+H   N L    + S L  +  T  +ALS F    G  +R          
Sbjct: 264 LAHIKLNIPGFHNVYNSLAAFAVASKLGVESITIEQALSEFC---GASRRLEKVGEFDGI 320

Query: 340 TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCE 380
            L D+ Y  +P  +KA ++ L ++S         PH   R  ++L +  E
Sbjct: 321 YLYDD-YAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAE 369


>gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 459

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 160/390 (41%), Gaps = 63/390 (16%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+    ++LG L        + +  T IA++G+ GKTTT  M++  L +        G 
Sbjct: 94  LPMLTRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSMISHILLA--------GD 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200
            +  I V   L  +  ++  G  ++ ++   E    FL  L  P I +I  +   H+  F
Sbjct: 138 TDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFL--PKIGIILNVEEDHMDFF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +++I  +       L K GT+ +N + S +E + A  +      + ++G   +AD+  
Sbjct: 196 KDLDDIRHSFHRFAALLPKDGTLIINSEISQYEQIIAGLNC----NVITYGIHHDADY-- 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI----------GYHMAQNMLMTLGIVSILTADV 310
                 + Q+     +   S +++ HG           G H   N L  +   ++L  D+
Sbjct: 250 ------TAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNVSNALSAIITGTLLGIDL 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-------- 362
           +   K L  F    G  +R+         T+ID+ Y  +P  ++A +S            
Sbjct: 304 EKIKKGLLSF---TGTDRRFEYKGTLDGVTIIDD-YAHHPTEIEATLSAAQHYPHREIWC 359

Query: 363 -ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              PH   R  A   +  +   L+ + H+ LA++ +      + +S     AL DA+ R 
Sbjct: 360 IFQPHTYTRTKAFFHEFAQA--LTLADHVILADIYAARETDTLGMSS---EALSDAI-RE 413

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +Y  + D +  F++   + GD+++ 
Sbjct: 414 LGGDSYYFSSFDEIKNFVKEKCIHGDMLIT 443


>gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
          Length = 491

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 122/315 (38%), Gaps = 59/315 (18%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI------IAITGSVGKTTTKEML 126
           D    + S +IP    + V     ++ V  R    A +      IAI G+ GKTTT  M+
Sbjct: 78  DASVVVASTAIPADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAIAGTHGKTTTTAMI 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRFLT----- 179
           +                    G+       P  V+ G+ +   +H  LG  R+L      
Sbjct: 138 S--------------------GIYAQAGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADE 177

Query: 180 ------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                 HL +P +AV+T I   H+  + G  E +          L   G   +  DD   
Sbjct: 178 SDASFLHL-QPMVAVVTNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVV 236

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYH 291
           + L  +   +G + + ++G S+ AD ++  ++Q   Q +  V  QG   + VV +  G H
Sbjct: 237 KELIPR---IG-RYVTTYGFSEEADVRITHYEQKGAQGFFTVSRQGFPDLHVVLNAPGCH 292

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---------CALNQGFFTLI 342
            A N    + + +    +    + +L+ F   +G G+R+              +G   L+
Sbjct: 293 NALNATAAVAVATEEGINDSAILASLAEF---QGTGRRFDFLGDFSLKYINKKEGSVMLV 349

Query: 343 DESYNANPASMKAAI 357
           D+ Y  +P  + A I
Sbjct: 350 DD-YGHHPTEVDATI 363


>gi|15892483|ref|NP_360197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           conorii str. Malish 7]
 gi|30316098|sp|Q92I60|MURD_RICCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15619640|gb|AAL03098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia conorii
           str. Malish 7]
          Length = 500

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S +IP+    D+L A +K             IAITG+ GK+TT  +++  L+S    Y  
Sbjct: 85  SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G    +IGV    A+     D  + EL    L  ++  T      IAV+  I P HL  
Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +    +AK++IF+ +++     +N D+ +
Sbjct: 186 HQDMTCYIAAKSKIFDRMDQESYAVINIDNDY 217


>gi|157828435|ref|YP_001494677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933147|ref|YP_001649936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. Iowa]
 gi|157800916|gb|ABV76169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908234|gb|ABY72530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           rickettsii str. Iowa]
          Length = 500

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S +IP+    D+L A +K             IAITG+ GK+TT  +++  L+S    Y  
Sbjct: 85  SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G    +IGV    A+     D  + EL    L  ++  T      IAV+  I P HL  
Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +    +AK++IF+ +++     +N D+ +
Sbjct: 186 HQDMPCYIAAKSKIFDRMDQESYAVINIDNDY 217


>gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 500

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 148/367 (40%), Gaps = 68/367 (18%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           K A +VVV+T + A    +         V+     LA   R R     IAI G+ GKTTT
Sbjct: 81  KDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 137

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRFLT- 179
             M    +SSI   YA  G               P  V+ G+ +   +H  LG  R+L  
Sbjct: 138 TAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGSSRYLIA 177

Query: 180 ----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
                     HL +P +AV+T I   H+  + G  E +          L   G   +  D
Sbjct: 178 EADESDASFLHL-QPMVAVVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCID 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           D     L  +   +G + I ++G S++AD ++  ++Q   Q    +  Q K  + V  + 
Sbjct: 237 DPVVRELLPR---VG-RHITTYGFSEDADVRIESYQQNGAQGTFFICRQDKPRLAVTLNA 292

Query: 288 IGYHMAQNMLMTLGIVSILT----ADVDTAIKALSVFHPKEGRGKRY----RCAL----- 334
            G H   N L     VS+ T    AD D  ++AL  F   +G G+R+      AL     
Sbjct: 293 PGRH---NALNAAAAVSVATEEGIADEDI-LRALEGF---QGTGRRFDFLGEYALENVNG 345

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G   L+D+ Y  +P  + A I       P+   RR+ ++         ++  + D A 
Sbjct: 346 KEGKAMLVDD-YGHHPTEVDATIKAARAGWPN---RRLVMIFQPHRFTR-TRDLYDDFAN 400

Query: 395 VLSLYNI 401
           VLS  ++
Sbjct: 401 VLSQVDV 407


>gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 477

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 122/314 (38%), Gaps = 33/314 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+     IPV    D+L         A L    T + + G+ GKT+T  M+  AL
Sbjct: 85  NPELVAA-READIPVIRRSDLL---------AELMQDRTQVLLAGTHGKTSTTSMVVSAL 134

Query: 131 SSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +  K  +  IG   N  G   T A    D D  + E   S    +R+      P IAVI
Sbjct: 135 QAAGKDPSFAIGGQLNRAG---TNAHHGKD-DIFVAEADESDASLLRY-----DPDIAVI 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I P HL  F   E       +  E ++  GT+ +  +D     L  ++   G++ +  
Sbjct: 186 TNIEPDHLDYFGSAEAYFQVFDDFAERIKPNGTLIVCVEDEHAAELGRRAVESGVQVV-G 244

Query: 250 FGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G SK            ++   +   E + + V+L    +       G+HM  N    L 
Sbjct: 245 YGSSKALAQHPDITPGAEILTEEVGRETTAVTVKLPSGEVSYDLQIPGHHMVLNSAAALI 304

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-SVL 360
              +  A      + LS F    G  +R+      G    + + Y  +P  + A + +  
Sbjct: 305 AGELAGAKAQALAEGLSDF---TGVRRRFEYRGTAGDNIRVYDDYAHHPTEVAAVLGAAR 361

Query: 361 SQISPHGEGRRIAV 374
            +++  G G R+ V
Sbjct: 362 EKVTAEGLGGRVVV 375


>gi|256395244|ref|YP_003116808.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
 gi|256361470|gb|ACU74967.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
          Length = 469

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   VVV+TD+ A  G++ + V      L  L++ +  A L      +AI G+ GKTTT 
Sbjct: 75  GVDTVVVSTDIPA--GNIEV-VEAKARGLRLLHRASALASLMPGYRSVAIAGTHGKTTTS 131

Query: 124 EMLTIAL--SSIKKTYACIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            M+T+AL  + +  ++   G       + H G    L     + D G F           
Sbjct: 132 SMVTVALRHAGLDPSFVIGGEIGETGESGHAGSGDVLVAEADESD-GTF----------- 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
             TH  RP I+VIT I   H  +F+ + ++  A+ + F G LE  GT+    DD     +
Sbjct: 180 --THY-RPDISVITNIELDHPDHFADVAQV-RAEFQDFAGRLEPGGTLVCYADDPAARTI 235

Query: 236 KAKSHALGIKTIYSFGKSKNADFQL 260
             ++ A G++ + ++G   + D ++
Sbjct: 236 AERTAARGVR-VLTYGAGADVDIRV 259


>gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
 gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
          Length = 465

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE + +   +    +   G      DDS  + L  K   +  +
Sbjct: 181 IAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGK---ITDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + ++G +  AD +          +  +V LQ + + +    +   G H   N L  + +
Sbjct: 238 RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEDLTIKDCALPMPGDHNVSNALSAIAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F   +G G+R+      G  T+ID+ Y  +P  + A +    Q
Sbjct: 298 ARYLGMKAEEIRAALAAF---KGVGRRFTRVGEVGGVTIIDD-YGHHPTEISAVLKAARQ 353

Query: 363 ISPHGEGRRIAV 374
            S   +GR +AV
Sbjct: 354 AS---DGRILAV 362


>gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
 gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
          Length = 430

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 32/219 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +IA+TGS GKTT+ ++L+     +   +YAC      +IG P     +     + + E+ 
Sbjct: 100 VIAVTGSNGKTTSCKLLSFVFQKLGLDSYAC-----GNIGTPAADV-LGFKTKYLVLEIS 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L    F + ++   I V+  I P HL     +E  A +K ++ E   KTG I+   D
Sbjct: 154 SFQL----FWSKMLHIDIGVVLNIQPNHLDWHPSLEHYAKSKLKLLE-FSKTG-IYNCSD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  + +  KS+      +           ++RK           +  +GK     +  +
Sbjct: 208 QNIMKFISEKSNLCAFDPL-----------KIRKVDDG-------IVYEGKYYTFKNDFL 249

Query: 289 GYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             H   QN+   L I S++  D+   ++ L  F P + R
Sbjct: 250 KTHQNLQNLSAILKIFSVMNFDLKQVLEILEDFKPLKHR 288


>gi|22127499|ref|NP_670922.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM 10]
 gi|45443360|ref|NP_994899.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809536|ref|YP_653452.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|108810587|ref|YP_646354.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|145600341|ref|YP_001164417.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162418996|ref|YP_001607294.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Angola]
 gi|21960596|gb|AAM87173.1|AE013964_9 UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis KIM 10]
 gi|45438229|gb|AAS63776.1| UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774235|gb|ABG16754.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|108781449|gb|ABG15507.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|145212037|gb|ABP41444.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162351811|gb|ABX85759.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Angola]
 gi|262360674|gb|ACY57395.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis D106004]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 57/315 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    LSSI   YA  G               P  V+ G+ +   +
Sbjct: 138 IAVAGTHGKTTTTAM----LSSI---YAEAGLD-------------PTFVNGGLVKAAGT 177

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 178 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 237 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLRR 292

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           Q K + EV  +  G H A N    + + +    + +  ++AL  F   +G G+R+    N
Sbjct: 293 QDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 349

Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                    +G   L+D+ Y  +P  + A I       P    +RI +L         ++
Sbjct: 350 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWP---DKRIVMLFQPHRYTR-TR 404

Query: 387 SFHIDLAEVLSLYNI 401
             + D A VLS  ++
Sbjct: 405 DLYDDFANVLSQVDV 419


>gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
 gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
          Length = 481

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +F++ A+ +G G  V   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK-KEFLISAISQGLGWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|94501895|ref|ZP_01308405.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
 gi|94425948|gb|EAT10946.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
          Length = 485

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 29/266 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ++   L+   K    +      IG  LT A     +    + +  +
Sbjct: 122 IAVAGTHGKTTTTSLVASILAEGDKDPTFV------IGGRLTSAGTNAQLGGSRYLVAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYD 228
              +  FL HL +P ++++T I   H+  + G    +     E    L   G  +    D
Sbjct: 176 DESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFNRVKKTFIEFLHNLPFYGLAVLCIED 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHH 286
           ++  E+L   S     + + ++G S +AD+  ++ KQ    +   V+  G  K +++   
Sbjct: 234 ETIREILPEVS-----RPVVTYGFSDSADYYAQEIKQEGIYTSFTVKRPGDNKDLQIRLR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES- 345
             G H   N L  + + +      D  I+AL  F   +G G+R++     G + L D+S 
Sbjct: 289 MPGRHNVLNALSAIAVATDEGIADDAIIRALEKF---QGVGRRFQIC---GEYPLQDDSV 342

Query: 346 -----YNANPASMKAAISVLSQISPH 366
                Y  +P  +   I  + +  P 
Sbjct: 343 MLVDDYGHHPTEVAVTIDAIRKGWPE 368


>gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
 gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 16/202 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVD 159
           ARL      IA+ G+ GKTTT  ML ++L+++ +  +YA  G  +     P + A     
Sbjct: 104 ARLMDGLRPIAVAGTHGKTTTTSMLAVSLTALGREPSYAIGGDLD----APGSNAL---- 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LE 218
              G  E+ ++   E     H   P +A++  +   H +N++ ++EI  +  E F G + 
Sbjct: 156 --HGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYESF-ETFAGRVV 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ ++ D      L  +  A  ++T+ ++G +++AD ++         S + V+L G
Sbjct: 213 PGGTLVVSADHEGARELT-RRLAKTVRTV-TYGAAEDADVRVLSVVPHGLTSEVTVELDG 270

Query: 279 KSMEVVHHGIGYHMAQNMLMTL 300
             +       G H A N +  L
Sbjct: 271 APLTFTVSVPGRHYAHNAVAAL 292


>gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
 gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
          Length = 584

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 124/304 (40%), Gaps = 66/304 (21%)

Query: 11  LQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKG--PHYDGHDFILHAVQKGAGL 67
           + A+Q  S+  +P Q F     +DSR +   EAF  +K   P+       L+     A  
Sbjct: 58  MTAVQLDSVVNIPFQQFC----LDSRQLIRNEAFALLKSHTPNCQKSRDYLYQAANNAAF 113

Query: 68  VVVNTDMVASIGSLSIP-----------------------------VFGVDDVLGALNKL 98
           ++   D +A I + +IP                             V  + D LG+L   
Sbjct: 114 ILSEIDPLALIATGNIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSL--- 170

Query: 99  AVAARLRSK-----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-HIGVPLT 152
            + ARL+ +      T++A+TG+ GKTT  +++         + A +G+  N  +G  + 
Sbjct: 171 -IQARLQYQQRVTLPTVVAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQ 229

Query: 153 LARMPVD---VDFGIFELGM-----------SH-LGEIRFLTHLVRPHIAVITTIAPAHL 197
            +    D   V   + ++G            SH L + R     V   +A+ T ++  HL
Sbjct: 230 ASHTTGDTLAVQQFLHQMGKEGAELLALEASSHGLDQQRLQGMPVS--VAIYTNLSRDHL 287

Query: 198 SNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
              + + E A+AKA++F+           +N DD + +++   +HA  +K   YS   SK
Sbjct: 288 DYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEYAQIMLDTAHASHLKVWTYSLDPSK 347

Query: 255 NADF 258
            A F
Sbjct: 348 TATF 351


>gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + +  + ++ +AA++ + A II +TGS GKTTT  M+T  L+  +K      + N  
Sbjct: 92  AVSEKMPIITEVELAAQM-TDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGN-- 148

Query: 147 IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IGV  T   +    D  I  EL    L  I+ L     PH+AV+T I   HL      + 
Sbjct: 149 IGVSATETALKSTADDTIVMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKN 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +AK  I           +N+D   +  L  +S A
Sbjct: 205 YVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSKA 240


>gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3549]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 33/287 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---LHAVQKGAGLV---------VVNTDM 74
           V GI + + +IA +       G H  G+D +   L A  +  G+V         V N D+
Sbjct: 10  VGGIGVSALAIAAKRL-----GAHVAGYDSVANKLTAKLEALGIVIFTSPSGVDVANFDI 64

Query: 75  VASIGSL--SIPVFGVDDVLG--ALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V    ++  S P+      LG   L + + +A  ++  +  +AITG+ GKTTT  +L   
Sbjct: 65  VVYSSAILSSHPLLSQARSLGIQCLQRAMFLAVLMKDFSYSLAITGTHGKTTTSSVLATL 124

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEIRFLTHLVRPHIAV 188
           L  + K  + +      +G  +  A   + V+ G  +L + +   +  FL   + P + +
Sbjct: 125 LCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIEADESDASFL--FLNPQVVI 175

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H++ ++   +        F   E   +I+L  DD     L AK +    K + 
Sbjct: 176 ITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSDKNVT 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           S+G S NAD Q+  +    E +  +++ +G  +       G +  QN
Sbjct: 235 SYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQN 281


>gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
 gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
          Length = 554

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 122/338 (36%), Gaps = 48/338 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +   + F A  G   DG  F+  A+ +GA   +V+   +A+        +G+D
Sbjct: 29  LSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLAAFAD----AYGLD 84

Query: 90  DVLGALNKLAVAARLRSKAT-----------------IIAITGSVGKTTTKEMLTIALSS 132
               A    A A     KA                  ++AITG+ GKT+T   L  ALS+
Sbjct: 85  ASARAERIAAYAGPEGLKAASGPIAANYYGQPSQALEVLAITGTNGKTSTAWWLAQALSA 144

Query: 133 IKKTYAC-----------IGSYNNHIGVPLTLA---------RMPVDVDFGIFELGMSHL 172
           ++ T  C             +    +G  LT           R   D  F    L  S +
Sbjct: 145 LRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGFSACALEASSI 204

Query: 173 GEI-RFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           G + R L  TH+    +A+ T     HL     +     AKA +FE  +    +    D 
Sbjct: 205 GIVERRLDGTHI---RVALFTNFTQDHLDYHGSMAAYWQAKAALFEWPQLPAAVVNVDDP 261

Query: 230 SFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              EL +  +   G+     S      A  +    +  +     E+    ++  +    +
Sbjct: 262 QGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQTTSLQARTL 321

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           G +   N+L  +  +  L   +  A+ A    HP  GR
Sbjct: 322 GAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGR 359


>gi|322834422|ref|YP_004214449.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
 gi|321169623|gb|ADW75322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 146/355 (41%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++  I+AITGS GK+T    +T  +  + K          +IG+P+ L  +  + D  + 
Sbjct: 103 TQTPIVAITGSNGKST----VTTLVGEMAKAAGWRVGVGGNIGLPV-LTMLDHEYDLFVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L      TH +    A I  +   H+  +  G+++  +AK +++   E      
Sbjct: 158 ELSSFQLET----THSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLKVY---ENAALCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        K   SFG     D+ L + +   +  W+ V+    L  + 
Sbjct: 211 VNADDALTMPVRGAD-----KRCVSFGVDV-GDYHLTRQQ---DDIWLRVRGEKVLNTRE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +   +     +++KAL+ F    G   R++ A       
Sbjct: 262 MPLT----GRHNYTNALAALALADAVGIPHASSLKALTTF---TGLAHRFQVAWQHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H EG    +LG   +  + S      L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVEGTLHLLLGGDGKSADFSP-----LTRYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  ++  G     L D  P    +   ETM+     I + +V GD+V++  S +C
Sbjct: 365 L-RIYCFGRDGAELADLRPDVSSLF--ETMEQAMRDISTRVVSGDMVLL--SPAC 414


>gi|166033152|ref|ZP_02235981.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
 gi|166027509|gb|EDR46266.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 35/301 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKTTT  M++  L +        G  +  I V   L  +  ++  G  E+ ++
Sbjct: 170 IAVSGTHGKTTTTSMISHILLA--------GEMDPTISVGGILKAIGGNIRVGNSEIFVT 221

Query: 171 HLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E    FL+    P I+VI  I   HL  F  +E+I ++     + L K GT+ +N D
Sbjct: 222 EACEYTNSFLSFF--PKISVILNIDEDHLDFFKDLEDIRNSFHRFAKLLPKDGTLVINGD 279

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHH 286
               + L   +  L  K + ++G + +A +        +  E S+  V+  G+ ++ +  
Sbjct: 280 ---IDRLDEITGDLDCKLV-TYGTNPSATYHAANVTHDELGEASFDLVK-NGEFVDRISL 334

Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            + G H   N L  L +  +L  +V  A K L  FH   G  +R+         T+ID+ 
Sbjct: 335 SVSGDHNVSNALAALAVADLLDVNVSVAKKGLKEFH---GTDRRFEYKGETNGVTIIDD- 390

Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  + A ++  +            PH   R  A+  +  E   LS + H+ +A++ 
Sbjct: 391 YAHHPTEIAATLTAATHYPHREIWCIFQPHTYTRTKALFPEFVEA--LSHTDHVIMADIY 448

Query: 397 S 397
           +
Sbjct: 449 A 449


>gi|229543492|ref|ZP_04432552.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
 gi|229327912|gb|EEN93587.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
          Length = 437

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 42/296 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  +L   +  IK T   IG      GVP          ++ +FE  
Sbjct: 102 TSVAVTGAHGKTSTTGLLAHVMHEIKPTSYLIGDGTGK-GVP--------GAEYFVFE-- 150

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL++   P  A++T I   H   ++ I+++ SA  E+   L+    I   
Sbjct: 151 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYYANIDDVFSAFQEM--ALQVKKGIIAY 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD   + ++AK     +  ++ +G  +  DFQ R      + +  +V ++     + E+
Sbjct: 204 GDDEQLQKIQAK-----VPVVF-YGFEEGNDFQARNIVTEPQGTKFDVVVRNNFYGTFEI 257

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLI 342
              G       N+L  LG++++   +    I+  +V  H K   G + R    +    +I
Sbjct: 258 PSFG-----NHNVLNALGVIALCQYE---GIEKEAVETHLKTFHGVKRRFTEKEIGTQII 309

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            + Y  +P  +KA I    +  P  E   +AV          +Q+F  + AE L+L
Sbjct: 310 IDDYAHHPTEIKATIDAARKKYP--ERELVAVF--QPHTFSRTQAFLTEFAESLNL 361


>gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 150/372 (40%), Gaps = 38/372 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G +ID R +AP   F A  G   +G DFI  AV  GA  VVV        G+L I  
Sbjct: 21  IVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFIDAAVAAGAIAVVVRPGAKVE-GALQI-- 77

Query: 86  FGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
              D+    A  ++A      +  TI+A+TG+ GKT+T EM       + +  A IG+  
Sbjct: 78  --ADEAPRKAFAEIAAQYFTPAPDTIVAVTGTNGKTSTVEMTRQLWRMLGERAASIGTLG 135

Query: 144 ----NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIA 187
               +  +   LT    P  V F     G+   G++H+       G  ++  +  R    
Sbjct: 136 VTTPDESVSTGLT---TPDIVTFHANLSGLAREGVTHIAYEASSHGLDQYRNYGARVVAG 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA--LGIK 245
             T  +  HL     ++    AK  +F+ +   G   + + D      KA++ A   G++
Sbjct: 193 AFTNFSRDHLDYHESMQAYFEAKMRLFDEVIADGGTAVIWADGGEWADKARTRAEKRGLR 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I++ G   + D  L   +       +E+   G    +    IG + A N L    +   
Sbjct: 253 -IFTVGPQGD-DICLIGQEPSQLGQSVEIARNGDRRTIRLPLIGQYQAANALTAAALALA 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQIS 364
             AD      A+    P   RG+  R  + Q G    +D  Y   P +++AAI+ L    
Sbjct: 311 SGADEARLWDAVGRLQPV--RGRLERAVITQSGAPVYVD--YAHTPDALEAAIAAL---R 363

Query: 365 PHGEGRRIAVLG 376
           PH  GR I V G
Sbjct: 364 PHVNGRLIVVFG 375


>gi|269795576|ref|YP_003315031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
 gi|269097761|gb|ACZ22197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
          Length = 487

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 15/126 (11%)

Query: 96  NKLAVAARLR-------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +++ +A RLR         A  +A+TG+ GKTTT EML   L +  +  A +G    ++G
Sbjct: 83  SEVELAWRLRVPTASTGQPAPWLALTGTNGKTTTVEMLLSVLEADGRRAAAVG----NVG 138

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            PL  A +  +++    EL    L      T  + P +  +  +A  HL      EE A+
Sbjct: 139 RPLVEAVVDPEIEVLAIELSSFQL----HFTSSMSPLVGAVLNVAADHLDWHGTFEEYAA 194

Query: 209 AKAEIF 214
           AK ++F
Sbjct: 195 AKGKVF 200


>gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
 gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
          Length = 487

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 48/337 (14%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA ++VV++ +      VAS     IPV    ++L  L       R R  
Sbjct: 71  FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 124

Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           +
Sbjct: 125 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLG-------ASRY 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   
Sbjct: 174 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 231

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
           +  DD    E+L   +     +   ++G S++AD +    +Q   ++W  V + + + ++
Sbjct: 232 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 286

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 287 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 343

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             L+D+ Y  +P  + A I  +    P    RR+ ++
Sbjct: 344 VMLVDD-YGHHPREVAAVIKAIRGGWPE---RRLVMV 376


>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
 gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP 150
           L  L ++ +A RL SKA I AITG+ GKTTT  +L  +  ++ +K Y        +IG P
Sbjct: 93  LEILGEVELAYRL-SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVA-----GNIGYP 146

Query: 151 LTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           L  A +     D  + E+    L  ++      RP I+ I  I P HL      E  A+ 
Sbjct: 147 LIYAALEAGPNDHIVAEISSFQLETVKEF----RPKISCIINITPDHLDRHKTFENYANI 202

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           K  IFE   +   + LNYDD     LK ++ A     ++ F + K
Sbjct: 203 KGRIFENQREEEYVVLNYDDPVTWGLKERAKA----KVFPFSRKK 243


>gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
          Length = 468

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 179/438 (40%), Gaps = 73/438 (16%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GAG +V +T + A      +  +  IPV     +L  L +L        
Sbjct: 56  GHD---AANIRGAGAIVTSTAVSADNPEVLAARAARIPVVPRALMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L +       G 
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGDLDPTF-VIGGRLNSAGANARLGQ-------GE 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           F +  +   +  FL  L  P + +IT I   H+  +   +  + SA  E  + L   GT 
Sbjct: 156 FIVVEADESDASFLNLL--PVMCIITNIDVDHMDTYGHDVARLKSAFIEFTQRLPFYGTA 213

Query: 224 FLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKS 280
            L  DD +  E++   S     + + ++G    A  Q+R     ++ + M  +VQ QG +
Sbjct: 214 VLCSDDPNVREIIPFVS-----RPVTTYGIESEA--QVRALNVRADGTLMRFDVQRQGAT 266

Query: 281 -----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---- 331
                M V  +  G+H   N L  + + + L       +++L+ F+   G G+R+     
Sbjct: 267 GALPPMTVSLNLPGHHNVLNALAAIAVATELGVPDAAIVESLAAFN---GVGRRFTQVGD 323

Query: 332 --CALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              A  Q  G +T+ID+ Y  +P  M A ++      P    RRI +             
Sbjct: 324 FPVAAQQGGGTYTVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDC 379

Query: 388 FHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLF 436
           F  D   +L   +   ++ V+ +G   L   D  AL R++ V       + E +  L   
Sbjct: 380 FE-DFVRILGQADAVLLTDVYPAGEQPLIAADGRALTRALRVAGKVEPVFVEDVAELPQT 438

Query: 437 IQSSLVDGDVVVVKSSNS 454
           I+    +GDVVV+  + S
Sbjct: 439 IRDFARNGDVVVIMGAGS 456


>gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
 gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
          Length = 496

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 115/284 (40%), Gaps = 34/284 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGIS---IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L++   G  I I+   F +  S    +++++     F  IKG ++D HD I   V+ GA 
Sbjct: 3   LIENTDGLDIDIISGKFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            VVV      +I    I V  VD    AL +L+ A       K  II ITG+ GKTT+  
Sbjct: 63  AVVVE----RNIKRDDICVIKVDSTRAALARLSAAYFGHPAKKMKIIGITGTKGKTTSSY 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV--PLTLARMPVD----------VDFGIFELGMSHL 172
           ML   L    K    IG+    +G     TL   P            +D G   + M   
Sbjct: 119 MLKKLLEQNAKV-GLIGTNGITVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEVS 177

Query: 173 GEIRFLTHL--VRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   L  +  ++ +I + T I+P H+         E    K+  F+  EKT    +N D
Sbjct: 178 SQAVMLKRIEGIKFYIGIFTNISPDHIGPDEHKDFTEYLMYKSLFFKQCEKT---VVNAD 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           D     +  +S +      Y FGK    DF +      S++ ++
Sbjct: 235 DEHSAYILEQSTS---DEKYEFGKC--GDFVINNINYISKKDFL 273


>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
 gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
          Length = 435

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +K  IIAITG+ GK+TT  ++   L    K     G+Y    G+PL+ A +  + ++ + 
Sbjct: 91  AKGKIIAITGTNGKSTTVALVERILKGASKRVIACGNY----GLPLSEA-IYENAEYYVV 145

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     L    F+    +P+IA I  IA  HLS    ++    AK +IF+   +      
Sbjct: 146 EASSYQL---EFIDKF-KPNIAAILNIAFDHLSWHGSMDNYIEAKKKIFKNQLEDDFFIK 201

Query: 226 NYDDSF 231
           N  DS+
Sbjct: 202 NDSDSY 207


>gi|86134329|ref|ZP_01052911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
 gi|85821192|gb|EAQ42339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
          Length = 461

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)

Query: 82  SIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+P+    VD+ +  ++++  AA   +KATI+ ITGS GKTTT  +    L +       
Sbjct: 92  SVPLVKKLVDNNIPVISEIEFAANF-TKATIVGITGSNGKTTTTLLTHHILKNANLDVGA 150

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G    +IG    L     + +  + E+    L  I       RPHIA++T I P HL  
Sbjct: 151 AG----NIGDSFALQVAEKNYNNYVLEISSFQLDGITNF----RPHIAILTNITPDHLDR 202

Query: 200 FS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +    +   ++K  I +  E+T  +  + DD 
Sbjct: 203 YDYDFQNYINSKFRITKNQEETDFLIYDADDD 234


>gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes
           130Z]
 gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes
           130Z]
          Length = 476

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 152/384 (39%), Gaps = 57/384 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IAI G+ GKTTT  M+++  +   +  T+   G       N ++G    L     + D  
Sbjct: 121 IAIAGTHGKTTTTAMISMIYTQAGLDPTFVNGGLVKSAGTNAYLGASRYLIAEADESDAS 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P ++V+T I P H+  + G  +E+          L   G 
Sbjct: 181 FLHL---------------QPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGL 225

Query: 223 IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKS 280
             +  DD+   EL+         + + ++G S+ AD+++  ++Q   Q   +V    G+ 
Sbjct: 226 AVMCADDAVLMELVPQVG-----RQVITYGFSEKADYRIENYEQTGFQGHYDVITPAGER 280

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           + ++ +  G H A N    L +        D  + AL+ F   +G G+R+          
Sbjct: 281 IHILLNVPGKHNALNATAALVVAKEEGIGNDAILAALADF---QGAGRRFDQLGEFIRPN 337

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           G   L+D+ Y  +P  +   I    Q +  G E RR+ ++            F  D   V
Sbjct: 338 GKVMLVDD-YGHHPTEVGVTI----QAARSGWENRRVVMVFQPHRYSRTRDLFD-DFVRV 391

Query: 396 LSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDG 444
           LS  ++     V+ +G   +A  D+   +  +     +D +F+         +   + DG
Sbjct: 392 LSQVDVLILLDVYPAGEQPIAGADSRSLARSIRNLGKVDPIFVADHGQLPEVVDQIIQDG 451

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
           D+++ + + +    RL   L+E +
Sbjct: 452 DLILAQGAGNVS--RLSRNLVEHW 473


>gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 149/368 (40%), Gaps = 39/368 (10%)

Query: 21  IVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           + P+G   +++ +   S ++AP   F  + G   DGH F   A+ +GA  V +  +    
Sbjct: 20  LSPRGDNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFAASALDRGA--VALCVERALD 77

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +    + V  V   +G L  + +      + T + ITG+ GK+TT  ML   L S     
Sbjct: 78  LPVPQVVVPDVRRFMGRLAAV-LYGEPAQRLTHVGITGTNGKSTTTYMLRSVLQSAGVKT 136

Query: 138 ACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +G+   H G               +   LARM V    G   +  S  G  +      
Sbjct: 137 GLLGTIVYHDGDKELEADRTTPENTDIQSFLARM-VSNGCGACVMETSSHGLEQGRIEGC 195

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIA-SAKAEIFEG-LEKTGTIFLNYDDSF-FELLKAKS 239
           R      T ++P HL ++ G EE    AK  +FE  ++ +     N DD++   LL+A  
Sbjct: 196 RFDRGGFTNLSPEHL-DYHGTEEAYFQAKKLLFEEYMKPSWKGASNRDDAYGRRLLEAYP 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHG-IGYHMAQN 295
             L     Y+  + +  D  L    +  + + M + L    G+ +  VH   IG +  +N
Sbjct: 255 ENL---VGYTREEPRPGD--LGATLKSFDLTGMCLDLTLPDGRVLPEVHLPLIGTYNVEN 309

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   L  D +T  + L+      GR +RY  +L  G   +ID  Y   P  ++ 
Sbjct: 310 ALACAALARTLDIDGETIRRGLASMPQVPGRLERY--SLPGGVTCVID--YAHTPDGLEK 365

Query: 356 AISVLSQI 363
            +S L  +
Sbjct: 366 VLSTLRHV 373


>gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
 gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
          Length = 492

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 150/378 (39%), Gaps = 48/378 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F A+ G   DG  F   A   GA  V       A +   +  + 
Sbjct: 27  VAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPADLPEATAWIE 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+    
Sbjct: 87  -VADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGTVGIV 145

Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
                        + + +  TLAR+   VD GI +L M   SH  E R L   V    A 
Sbjct: 146 TNRGAEYGSLTTPDPVTLHETLARL---VDEGITDLAMEASSHGIEQRRLDG-VELTAAA 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG--IK 245
            T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G  I+
Sbjct: 202 FTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAIR 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T       +  DF +R  +  +E     + L   GK   V    +G    +N L+  G+ 
Sbjct: 262 TT-----GRGGDF-IRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 304 SILTA-DVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               A   D A     VF   EG     G+  R     G   L+D  Y   P +++    
Sbjct: 316 LATPAGQADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---H 366

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS + P   GR + V G
Sbjct: 367 VLSALRPFASGRLVVVFG 384


>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           reducens MI-1]
 gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfotomaculum reducens MI-1]
          Length = 486

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 117/272 (43%), Gaps = 27/272 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LLQAI   +I   P+  + GI  DSR  A    F A+KG   DGH +I +AV  G  
Sbjct: 3   LKELLQAIPVITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAGVT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV  T++V   G   + V      L AL           K +++ +TG+ GKTTT  ++
Sbjct: 63  AVVYETEIVLPTGVTGVQVSDSRKAL-ALMADQFYGHPSKKLSMVGVTGTNGKTTTTHLI 121

Query: 127 TIALSSIKKTYACIGSYNNHIG---------VPLT------LARMPVDVDFGIFELGMSH 171
                  +     IG+ +N IG          P +      LA+M   +D G+  + M  
Sbjct: 122 AAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQM---LDEGVKGVAMEV 178

Query: 172 LGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                 L  +  V   +AV T I   HL   + +EE  +AKA++F          +N DD
Sbjct: 179 SSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLF--TTDIQYAIINADD 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              E LK  S       +Y++G  + AD + +
Sbjct: 237 PAAEELKKISRG----KVYTYGIDQAADIRAK 264


>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
 gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
          Length = 457

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 169/414 (40%), Gaps = 69/414 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S+ +     F AI+G + DGH F+  A+++GA  V V  D    +G     + 
Sbjct: 3   VKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKD----VGIEDPRIV 58

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L +L      R   K  +I +TG+ GKTTT  +L     +       IG+  
Sbjct: 59  KVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGLIGTIY 118

Query: 145 NHIGVPL----------------TLARMPVD------VDFGIFELGMSHLGEIRFLTHLV 182
             +G  +                TL  M  D       +     L    +   +F T   
Sbjct: 119 YRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKFFT--- 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                + T ++  HL     +E   SAK  +F    +  ++ +N DD + + + +    +
Sbjct: 176 ----TIFTNLSQDHLDYHGDMENYFSAKLLLFTQYPQEFSV-INADDPYGKRIVS---VV 227

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM---LMT 299
           G K   ++GK    D ++  ++   E S +EV+ +GK      H  G   A N+   ++T
Sbjct: 228 G-KRARTYGKE--GDLRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILT 284

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +  I    V+  +K + V     GR + YR     G   ++D  Y   P +++  +  
Sbjct: 285 AFLRGIDPQVVEEGVKDVRV----PGRFETYR---KDGKTVIVD--YAHTPDALEKLLRT 335

Query: 360 LSQISPHGEGRRIAVLG-----DMCE---MGELSQSFHIDLAEVLSLYNISHVW 405
              I+    GR + V G     D  +   MGE++Q++    A+V+ L + +  W
Sbjct: 336 ARGIT---RGRLLVVFGAGGNRDRTKRPLMGEVAQNW----ADVIVLTSDNPRW 382


>gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
 gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 179/438 (40%), Gaps = 87/438 (19%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +GA +VVV       N ++VA+  +  IPV    ++L  L       R R     IA+ G
Sbjct: 77  QGASVVVVSSAIPENNVEIVAARAA-RIPVIRRAEMLAEL------MRYRHG---IAVAG 126

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LG 173
           + GKTTT  M       +   YA  G               P  V+ G+ +    H  LG
Sbjct: 127 THGKTTTTAM-------VASIYADAGLD-------------PTFVNGGLVKAAGVHARLG 166

Query: 174 EIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221
             R+L            HL +P +A++T I   H+  + G  E +          L   G
Sbjct: 167 CSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGNFENLKQTFINFLHHLPFYG 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
              +  DD+    +  +   +G + I ++G S +AD Q++ ++Q   Q    +   GK+ 
Sbjct: 226 RAVMCIDDARIREILPR---IG-RHITTYGFSDDADIQIKDYQQQQAQGCFTLCRPGKTE 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------R 331
           ++V+ +  G H A N    + + +      D  + AL+ F   +G G+R+         +
Sbjct: 282 LKVMLNAPGCHNALNAAAAIAVATEERISDDCILTALANF---QGTGRRFDFLGHFSLEK 338

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +G   L+D+ Y  +P  +   I       P    +RI ++         +   + D
Sbjct: 339 VNGKKGSVMLVDD-YGHHPTEVAVTIKAARAGWPE---KRIVMIFQPHRYSR-THDLYDD 393

Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFL--------FIQ 438
            A+VL+  ++    +V+ +G   +   D  +L R+I V   + ++ +F+         + 
Sbjct: 394 FAKVLAEVDVLLMLNVYAAGEKPIPGADSRSLCRTIRVRNPDQLEPIFISDNEALLDILA 453

Query: 439 SSLVDGDVVVVKSSNSCG 456
             L D D+V+++ + + G
Sbjct: 454 KQLNDNDLVLIQGAGNIG 471


>gi|257068262|ref|YP_003154517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
 gi|256559080|gb|ACU84927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
          Length = 503

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 10/138 (7%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+TG+ GKTTT  ML +I L +  +  AC      ++G+P+  A +     F +  L +
Sbjct: 135 LAVTGTNGKTTTVTMLESILLRAGLRAVAC-----GNVGLPVIEAALD-PAGFDVLALEL 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   ++ +  HL     A +  ++  HL    G E  A+AK  I+EG+ +T  I+   D 
Sbjct: 189 SSF-QLHWTQHL-DCEAAAVLNVSDDHLDWHGGAEAYAAAKGRIYEGV-RTACIYNVADP 245

Query: 230 SFFELLKAKSHALGIKTI 247
           +   L++      G + I
Sbjct: 246 TTLRLVEEADVREGARAI 263


>gi|171462988|ref|YP_001797101.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229620049|sp|B1XT10|MURC_POLNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171192526|gb|ACB43487.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 125/316 (39%), Gaps = 47/316 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V  N   V +  +  IPV     +LG L +L            IAI G+ GKTTT  ++ 
Sbjct: 74  VAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQG---------IAIAGTHGKTTTASLVA 124

Query: 128 --IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A   +  T+  IG   N  G    L R     DF + E   S    ++       P 
Sbjct: 125 SVLAEGGLDPTF-VIGGKLNSAGANARLGRG----DFIVVEADESDASFLQLF-----PA 174

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALG 243
           + V+T I   H+  +   +  +  A  +  + +   G   L  DD+   +++   S    
Sbjct: 175 MEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCIDDANVRDIIPFVS---- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------IGYH 291
            + +  +G S +AD  +R     ++ + M   +  ++  V  HG             G H
Sbjct: 231 -QPVLRYGLSDDAD--IRAANVRADGTRMHFTVDRRT--VRRHGNKPGPLNITLNLPGLH 285

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQ-GFFTLIDESYNAN 349
             +N L  +GI + L    +   KALS F     R +RY    L+  G FTLID+ Y  +
Sbjct: 286 NVRNALAAIGIATELGVGDEAITKALSEFGGVGRRFQRYGEIPLDSGGSFTLIDD-YGHH 344

Query: 350 PASMKAAISVLSQISP 365
           P  M A ++      P
Sbjct: 345 PVEMSATLAAARGAYP 360


>gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
 gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
          Length = 509

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 48  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 160 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 272

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 273 PTI-TYGRSEESNYQV 287


>gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
 gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
          Length = 487

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 152/379 (40%), Gaps = 50/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           V G++ DSR + P   F A+ G   DG  F   A + GA  V       TD+  +   + 
Sbjct: 22  VAGLTADSRRVVPGGVFVAVPGTAADGRLFAAAAARAGAVAVAGEGTRPTDLPEATAWIE 81

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                V +   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+
Sbjct: 82  -----VAEARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGT 136

Query: 143 YN---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184
                            + + +  TLAR+  +   GI +L M   SH  E R L  +   
Sbjct: 137 VGIVTNRGAEYGSLTTPDPVTLHQTLARLAGE---GITDLAMEASSHGIEQRRLDGVAL- 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG 243
             A  T +   HL     +E+   AK  +F  L   G    +N D ++ E +   + A G
Sbjct: 193 TAAAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAG 252

Query: 244 IKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             T+ + G+S   DF +L +         + +   G+   V    +G    +N L+  G+
Sbjct: 253 -HTVLTTGRS--GDFIRLIESGTVGFSQSLTLAHDGREYRVRLPLVGGFQVENALVAAGL 309

Query: 303 -VSILTADVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            +S      D A     VF   EG     G+  R     G   L+D  Y   P +++   
Sbjct: 310 ALSTQAGAADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE--- 360

Query: 358 SVLSQISPHGEGRRIAVLG 376
            VL+ + P   G+ + V G
Sbjct: 361 HVLTALRPFASGQLVVVFG 379


>gi|148828299|ref|YP_001293052.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
 gi|166224694|sp|A5UIR3|MURC_HAEIG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148719541|gb|ABR00669.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
          Length = 475

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  KGA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAAEHIKGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|117618995|ref|YP_858322.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|171460770|sp|A0KPX1|MURC_AERHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117560402|gb|ABK37350.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 484

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 186/432 (43%), Gaps = 62/432 (14%)

Query: 54  HDFILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           H F+ H+ +    A +VVV+T +      + +   L IPV    ++L  L       R R
Sbjct: 66  HIFVGHSAEHVNEASVVVVSTAIKQDNPELLAARELRIPVVRRAEMLAEL------MRFR 119

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                IAI G+ GKTTT  ++ +I   + +     IG   N  G   T AR+        
Sbjct: 120 HG---IAIAGTHGKTTTTSLVASIYAEADRDPTFVIGGLLNSAG---TNARL----GSSR 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL HL +P ++++T I   H+  + G   ++ +   +    L   G  
Sbjct: 170 YLIAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFSKLKATFIDFLHNLPFYGLA 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSME 282
            +  DD    +++     +   TI ++G S +AD Q+  + Q S +S   V+ +    +E
Sbjct: 228 VVCVDDP---VIRGMLPEIARPTI-TYGLSDDADVQVLDFVQTSNRSRFRVRRKDAGELE 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYR----CALN 335
           V  +  G H   N L     +++ T D    D  I+AL+ F   EG G+R++        
Sbjct: 284 VTLNLPGIH---NALNAAAAIAVATEDGIGDDAIIRALAKF---EGVGRRFQQYGEFETG 337

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   L+D+ Y  +P+ +K  I+      P  E R + V          ++  + D A+V
Sbjct: 338 RGKAMLVDD-YGHHPSEVKVTINAARAGWP--EKRLVMVF--QPHRYTRTRDLYEDFADV 392

Query: 396 LSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           LS  ++     V+ +G   +   D  AL RSI         +  T D +   +   + +G
Sbjct: 393 LSKVDVLVMLEVYAAGEEPIPGADGRALCRSIRSRGSLEPIFVATPDDVPAVLAGLVGEG 452

Query: 445 DVVVVKSSNSCG 456
           D+V+ + + + G
Sbjct: 453 DLVLTQGAGNVG 464


>gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 162

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 11/117 (9%)

Query: 9   DLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL + I  QGH          + I  DSR  A +   F +KG  +   +F+L A+ +G G
Sbjct: 15  DLFREIIDQGHYHYNYSDVVFDSICYDSRK-AQENCLFFVKGAAF-KKEFLLSAIAQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
             V   D       + IPV  V D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 73  WYVAEQDY-----EVDIPVIVVSDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9312]
 gi|118595673|sp|Q319C4|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 468

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---TL 153
           ++ VA  +  +   I ITG+ GKTT   +L+  L    K YA    +  +IG PL     
Sbjct: 109 EINVAWEILKETNWIGITGTNGKTTVTHLLSHILCE-NKLYA---PFAGNIGTPLCKYAY 164

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   + K  +
Sbjct: 165 SKKYEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL 220

Query: 214 FEGLEKTGTIFLNYDD 229
              LEK+     NYDD
Sbjct: 221 ---LEKSDFRIYNYDD 233


>gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +P+
Sbjct: 17  LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  +   L+   +A R     +    ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 77  IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 S 142
           +
Sbjct: 135 T 135


>gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 487

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 142/372 (38%), Gaps = 28/372 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP   V+GI +DSR +A  + F AI G   DG  +I  A+  GA  ++     +A     
Sbjct: 16  VPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYIDAAIDAGAAAIIAEAPGMAVEQRR 75

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + V G   V   L+++A         K  ++ +TG+ GKT+   ++     ++    A 
Sbjct: 76  GVVVIGFSGVREHLSRIAGNFFGHPSEKMNLVGVTGTNGKTSVTHIMAQLAKALGMEAAV 135

Query: 140 IGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTH-LVRPHI------ 186
           IG+  + +   L   R      + V           + L  +   +H L++  +      
Sbjct: 136 IGTTGSGLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVAMEVSSHALIQRRVEALHFA 195

Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A IT I+  HL     +E   +AK  +F        +    DD+     +     L + 
Sbjct: 196 AAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNRVVNADDDTLSHWQQDDLADLWV- 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              S   S N         Q  EQ S   +  QG+S  V    +G     N+L  + ++ 
Sbjct: 255 ---SLNASPNEPCLQATGVQFHEQGSVFSLNWQGESCVVETPLLGRFNVYNLLCAVAVLL 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +    KA     P  GR + +    NQ    ++D  Y   P ++     VLS + 
Sbjct: 312 KLNKPLADIGKACGRLQPVPGRMEAFHN--NQSPLVVVD--YAHTPDALH---QVLSALR 364

Query: 365 PHGEGRRIAVLG 376
            H +GR   V G
Sbjct: 365 LHCKGRLWCVFG 376


>gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 146/365 (40%), Gaps = 49/365 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDF 162
           ++     IAI G+ GKTTT  M+T+     +K   + IG    +IG          +V+ 
Sbjct: 98  MKEYENSIAIAGTHGKTTTTSMITLVFDKAEKNPTSLIGGMFKNIGG---------NVEI 148

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G  ++ +S   E         P +AVIT I   HL  F  + +I ++  +    +++ G 
Sbjct: 149 GNSDIFISEACEYVDSFLQFYPKVAVITNIEEDHLDYFEDLSQIKNSFLKFANQVKEGGF 208

Query: 223 IFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK------QCSEQSWME-- 273
           +  N DD +  + LK        + +Y +G ++  DF +   +       C +  +    
Sbjct: 209 VIANGDDENVRDTLKDCK-----RNVYYYGFNEGNDFIIDNLEFDDFGYPCFDIFYANDG 263

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V +    + V   H +  + A + +++  ++ I   D+  AI+  +      G G+R+  
Sbjct: 264 VLIDNYKLNVFGKHNV--YNATSAIVSACMLDIEKEDIKNAIEKFT------GVGRRFEY 315

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGE 383
              +    + D+ Y  +P  +K+ +  +  +          PH   R  A+  +  E  +
Sbjct: 316 IGEKDGVRVFDD-YAHHPTEIKSTLDAIKSLKKNRFFSIFQPHTYTRTKALFKEFVECFD 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
                  D+A    +Y              L D + R     +Y ++ D +  F++ +  
Sbjct: 375 -----ETDIAIFADIYAAREPIDETVSSSMLCDEVNRRGKDAYYFDSFDKIVQFLRENAN 429

Query: 443 DGDVV 447
           DGD++
Sbjct: 430 DGDLI 434


>gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
 gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
          Length = 500

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 32/255 (12%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F  I G  +DGH F   AVQ+GA +++    +      L +P   V++   A+   A A 
Sbjct: 46  FCCIPGEKHDGHSFASDAVQRGAAVLLCQHAL-----PLQVPQIIVENSRWAMGFAAAAV 100

Query: 103 R--LRSKATIIAITGSVGKTTTKEML---------------TIALSSIKKTYACIGSYNN 145
                 + ++  ITG+ GKTT+  M+               TI  +  +K      +   
Sbjct: 101 YGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKEQEADRTTPE 160

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
              V   +ARM  +    +     SH      L   +   + V T + P HL     +E 
Sbjct: 161 SCDVQRLIARMKRNGCTSVIMEASSHGANQGRLNGCLFQGM-VFTNLTPEHLDYHKDMEH 219

Query: 206 IASAKAEIFEG-LEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFG--KSKNADFQLR 261
              AK ++FE  + +     +N DD +   LL+        K   SFG   +++ D QL+
Sbjct: 220 YFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIYG-----KKCLSFGLDSTRHHDVQLQ 274

Query: 262 KWKQCSEQSWMEVQL 276
            +     +  M+VQ 
Sbjct: 275 NFYMTLSELSMKVQF 289


>gi|222152567|ref|YP_002561742.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus uberis 0140J]
 gi|222113378|emb|CAR41017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus uberis 0140J]
          Length = 444

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 42/295 (14%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE   S  
Sbjct: 109 VAGAHGKTSTTGLLSHVLKNITDTSFLIGD---------GTGRGSANAQYFVFE---SDE 156

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E  F+ +   P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D   
Sbjct: 157 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVFSAFNDYAKQVKK--ALFVYGEDE-- 210

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291
           EL K  ++A     IY +G     DF      + +  S  +V+ +   +   H    G H
Sbjct: 211 ELKKISANA----PIYYYGFEDYNDFVAYDITRTTNGSDFKVKHKDNVIGSFHVPAYGKH 266

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANP 350
              N    +  + I   D+D   K +  F    G  +R+    +N+   T+I + +  +P
Sbjct: 267 NILNATAVIANLYIAGIDMDLVAKHMLTF---SGVKRRFTEKIINE---TIIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
             + A I    Q            PH   R IA+L D  +   L+++  + LA++
Sbjct: 321 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQA--LNEADSVYLAQI 373


>gi|320007795|gb|ADW02645.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces flavogriseus ATCC
           33331]
          Length = 464

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 21/201 (10%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYA 138
           L IPV    D L +L        LRS    IA+ G+ GKTTT  ML +ALS  ++  +YA
Sbjct: 92  LDIPVVHRSDALASLMD-----GLRS----IAVAGTHGKTTTTSMLAVALSELALDPSYA 142

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G        P T A    D D  + E   S     ++      P +A++  +   H +
Sbjct: 143 IGGDLEG----PGTNATHG-DGDIFVAEADESDRSFQKYA-----PEVAIVLNVELDHHA 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           N++ ++EI  +       +   GT+ +  D      L  +        + ++G+S+ AD 
Sbjct: 193 NYASMDEIYESFETFVGKVVPGGTLVVAADQPGAVELTRRVRERSSVRVVTYGESEGADV 252

Query: 259 QLRKWKQCSEQSWMEVQLQGK 279
           ++ K       S + V L GK
Sbjct: 253 RVHKVTPRGLTSEVTVVLNGK 273


>gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 481

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + IS DSR    +  FF +KG H+   +F+  AV  G G  +  TD+      + IPV  
Sbjct: 36  DKISYDSRKADSRTLFF-VKGEHFK-REFLEKAVAAGLGFYLSETDL-----EVGIPVLL 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V+D+  A++ +A+        K  ++A TG+ GKTT
Sbjct: 89  VNDIKQAMSLIAMEFYGHPEQKLKLLAFTGTKGKTT 124


>gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 476

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 12/177 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD 159
           A L   A  IA+ G+ GKTTT  ML ++L+++    +YA  G  +     P + A+    
Sbjct: 106 AGLMDGARPIAVAGTHGKTTTTSMLAVSLTTLGLDPSYAIGGDLD----APGSNAQ---- 157

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              G  E+ ++   E     H   P +A+I  +   H +N++ +EEI  +     E +  
Sbjct: 158 --HGGGEIFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMEEIHESFQTFVERIRP 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            GT+ ++ D      L  +        + ++G+   AD ++    Q    S + V L
Sbjct: 216 GGTLVVSADHPGARELTGRVTGREGLRVLTYGEDPGADVRVLDIAQRGLTSEVTVLL 272


>gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus YJ016]
 gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016]
          Length = 515

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G      +
Sbjct: 47  VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGLVRYQQN 106

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A +G+
Sbjct: 107 VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 166

Query: 143 YNN 145
             N
Sbjct: 167 TGN 169


>gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
 gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
          Length = 509

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 48  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 160 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215

Query: 187 AVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 272

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 273 PTI-TYGRSEESNYQV 287


>gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           IAITG+ GKTTT  +L   L  + K  + I      +G  +  A   + V+ G  +L + 
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S +AD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSIDADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 RYNVQN 281


>gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I   + F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILS 127


>gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           cylindroides T2-87]
          Length = 436

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LAR 155
           ++ +A R        A+TG+ GKTT   +L   L++ +K          +IG PL+ LA 
Sbjct: 91  EIEIAYRFAPGFKYAAVTGTDGKTTVTTLLYEMLNAKEKALVA-----GNIGTPLSELAL 145

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  F +  L +S+   +   T   +P I+V+T +AP HL     +EE   +K  I++
Sbjct: 146 IHQEETFNV-ALELSNFQLLGIDT--FQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYK 202

Query: 216 GLEKTGTIFLNYDDS 230
                     N DD 
Sbjct: 203 NCNSQDWFIRNIDDE 217


>gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 483

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 156/374 (41%), Gaps = 52/374 (13%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  DSR I   + F A++G   DGH++I  AV+ GA  V+V+  + A+     I +  +
Sbjct: 24  GIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVEAAFPVKYIWIKDL 83

Query: 89  DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              LG L     A+      + K  II ITG+ GKTTT  ++   L S K   A IG+  
Sbjct: 84  RKKLGVL-----ASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSNKT--ARIGTVE 136

Query: 145 NHIGVPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFLTHLVRPHI 186
             IG  +  A    P  +D         E GM +           LG +  L       +
Sbjct: 137 YKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRVDMLEF----DV 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           ++ T +   HL     +E+   AK ++F    +G EK   I  N DD + + L ++   +
Sbjct: 193 SMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVI--NIDDLYGKRLSSEFGGI 250

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S+G       + R  +   +   +E+ +   S       +G +   N+L  + I
Sbjct: 251 ------SYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNVLGAISI 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  + +  ++ +       GR +   C   Q F  ++D S+ ++     A  ++L  
Sbjct: 305 ALLLGIEKEIVLERIKELKGAPGRYELVNCG--QNFTVIVDYSHTSD-----ALENILKS 357

Query: 363 ISPHGEGRRIAVLG 376
           I+   +G+ I V G
Sbjct: 358 INELKKGKVITVFG 371


>gi|91762846|ref|ZP_01264811.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718648|gb|EAS85298.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 464

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 137/355 (38%), Gaps = 36/355 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I +TGS GKTTT  +L    S  K     I G   N I     L +     D+ I E   
Sbjct: 111 IVVTGSHGKTTTTSLLASIFSKTKLDPTIINGGVLNAIKNSAKLGKS----DWCILEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    I      V P  +++T I   H+  ++ ++++     +    +   G  F+  DD
Sbjct: 167 SDGSFIH-----VPPTYSIVTNIDREHMDFYNSMKDLKELFIKFINKVPSFGKSFICIDD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH- 286
              + L +K   L +K  Y++G    ++F ++  KQ  E S  +  + L GK    +   
Sbjct: 222 KNNKDLLSK---LKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPGKKNLTIRKI 278

Query: 287 ---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF---- 339
               +G H  +N    + +   +    +   K L  F   + R  +        F+    
Sbjct: 279 KLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFTHRETNFYDDYA 338

Query: 340 ---TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEV 395
              T I E  N   A+ K    V+    PH    RI+ L D+ +  E S SF   D+  +
Sbjct: 339 HHPTEIREVLNGVRAAYKKE-EVICIFQPH----RISRLKDLKK--EFSLSFKKADVVIL 391

Query: 396 LSLYNISHVWLSGFHVLAL-KDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +Y        GF      KD +  S + +   E    L  FI++++    +VV
Sbjct: 392 CPIYTAGEKIKLGFKYNNFAKDIIKNSKVRLFMVEDQYQLAKFIKNTIFGKKIVV 446


>gi|295688559|ref|YP_003592252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
 gi|295430462|gb|ADG09634.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
          Length = 470

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +   AA +  +  IIAITG+ GK+TT  ++    +S  +     G+    +   L L  M
Sbjct: 105 RTVAAAPVHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRIGGNIGQGV---LGLEDM 161

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + + EL    L     LT  + P   V+  I+P HL    G++   +AK  IF  
Sbjct: 162 HGGAVY-VLELSSYQLD----LTSSLHPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLN 216

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
             K  T  +  DD + + +  +  A   +TI+     K
Sbjct: 217 QGKGDTAIIGVDDPWCQQICTEITAANRRTIWPISAGK 254


>gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
 gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 481

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 150/368 (40%), Gaps = 45/368 (12%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   L  + +  T+  IG   N  G    L           + + 
Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLDPTF-VIGGKLNSAGTNAQLG-------GSRYLVA 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P I+V+T I   H+  + G +E++     +    L   G   +  
Sbjct: 174 EADESDASFL-HLT-PVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCV 231

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEV 283
           DD +  E++   S A     I ++G  + +AD++         ++   V+  G    ++V
Sbjct: 232 DDDYVQEIIPRISRA-----IITYGIDNPDADYRAENITSDGLKTRFLVRRPGGRPDLQV 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339
                G H   N L T+ + +    D     + L+ F    G G+R++        +   
Sbjct: 287 ELKMPGRHNVLNALATIAVATDEGVDDQAICRGLAGF---AGVGRRFQVYGEYRTPKAAA 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVL 396
           TL+D+ Y  +P  ++A I    +  P    RRI +L          +L + F   L+EV 
Sbjct: 344 TLVDD-YGHHPTEVEAVIRAAREAWPQ---RRIVMLYQPHRYTRTRDLYEDFVRVLSEVD 399

Query: 397 SLYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
            L  +  V+ +G   +   D  AL RSI         + E    +   + + L DGD+++
Sbjct: 400 GLL-LMDVYSAGEPAIPGADGRALCRSIRQRGKVEPVFVEDNREIESLLANVLQDGDLLI 458

Query: 449 VKSSNSCG 456
            + +   G
Sbjct: 459 TQGAGDIG 466


>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +       I K Y   G    H+G  +  A +P+  +    ++ +
Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVRPEDVAV 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             L   + ++    P IAV+T + P HL +   ++E   AK  I 
Sbjct: 173 VELSSFQLISMHQSPKIAVVTNVTPNHLDHHKDMQEYIDAKRNIL 217


>gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
 gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 265 PTI-TYGRSEESNYQV 279


>gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 480

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 45/322 (13%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA ++VV++ +      VAS     IPV    ++L  L       R R  
Sbjct: 64  FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 117

Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  ++    A   +  T+         IG  L  A     +    +
Sbjct: 118 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTFV--------IGGRLNAAGTNAQLGASRY 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   
Sbjct: 167 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 224

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
           +  DD    E+L   +     +   ++G S++AD +    +Q   ++W  V + + + ++
Sbjct: 225 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 280 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 336

Query: 339 FTLIDESYNANPASMKAAISVL 360
             L+D+ Y  +P  + A I  +
Sbjct: 337 VMLVDD-YGHHPREVAAVIKAI 357


>gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium DO]
 gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
 gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 265 PTI-TYGRSEESNYQV 279


>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
 gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
          Length = 449

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA+I+A+TG+ GKTTT ++L + L +  K +A  G    ++GV L+     +D +  I 
Sbjct: 102 TKASILAVTGTNGKTTTTKLLGLMLKNSGKKFAVAG----NLGVSLSDKADLID-EKSII 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +S   ++ F+ +  +P  A I  I P HL     +E    AKA IFE +     I L
Sbjct: 157 AAEVSSF-QLEFIKNF-KPKTAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILL 214

Query: 226 NYDDSF 231
           N DD +
Sbjct: 215 NADDKY 220


>gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 506

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 6/115 (5%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS---IGSLSIPVFGVD 89
           DSR +     F+A KG   DG DF+L A ++GA  ++ + D   S   +  ++IP+  + 
Sbjct: 34  DSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGAAAIICDYDKDPSAEQLKDVTIPLLHLK 93

Query: 90  DVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             + ++ + A        SK  +I ITG+ GK+T  +++   L+   +  A  G+
Sbjct: 94  KGM-SVGEFASWFYFSPSSKLRLIGITGTNGKSTVTQLIAQYLALFNRKCAVFGT 147


>gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIAITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGINVGVGGNIGLP---ALMLLDTDRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  I+E  +   T  
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG     D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +         +++K L+ F    G   R++  L+     
Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKVLTTF---TGLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|241895692|ref|ZP_04782988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871059|gb|EER74810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
          Length = 444

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--NNHIGVPLT-LARMPVDVDFGIFEL 167
           IA+TGS GKTTT EM+    +S+ +T    G      +IG P++ +A   +  D  + EL
Sbjct: 106 IAVTGSNGKTTTTEMI----ASVLRTQTGDGHVLVAGNIGTPVSEVAPKMLKDDVLVTEL 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE-IASAKAEIFEGLEKTGTIFLN 226
               L  +       +PHIAV+T I  +HL NF G  E   +AK  I +         +N
Sbjct: 162 SSFQLTGMP----APKPHIAVLTNIFASHL-NFHGTRENYVAAKMNITKHQTAADFFVVN 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK 252
           YD+  +  L  +++A    TI  F +
Sbjct: 217 YDNEEWRHLAEQTNA----TIVPFSR 238


>gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phytofirmans PsJN]
 gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia
           phytofirmans PsJN]
          Length = 515

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 42/236 (17%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           D+RS+A  +AFFA      D   FI  A+++GA  V+V  +     +    +L++P    
Sbjct: 34  DTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQPEGFSGAIDPSNTLAVP---- 89

Query: 89  DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                ALN+LA  +A+   +  +     + +TG+ GKT+  + ++ AL+++    A IG+
Sbjct: 90  -----ALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184
             +       H G      P     +    D G   + M       H G +         
Sbjct: 145 LGSGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF---- 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            IAV T +   HL      E   +AKA +F   +    + +N DD+    L A + 
Sbjct: 201 DIAVFTNLTQDHLDYHHTFEAYEAAKARLFAWPDLRAAV-INRDDAAGRRLLASTQ 255


>gi|116334052|ref|YP_795579.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis ATCC 367]
 gi|116099399|gb|ABJ64548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           brevis ATCC 367]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A +IA+TGS GKTTT  M+   +   ++    +  Y  +IG+P +     V  D  + 
Sbjct: 125 AEAELIAVTGSNGKTTTTTMIQKMVDHDRRAGKAV--YAGNIGIPASRVAQAVTADDTLV 182

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L +S    +   T    PHIAV+T I   HL      E   +AK +I           +
Sbjct: 183 -LEVSSF--MLVGTTTFHPHIAVLTNIFSNHLDYHKTRENYVAAKMKITANQTADDYFVV 239

Query: 226 NYDDSFFELLKAKSHA 241
           N+D      L  +S A
Sbjct: 240 NFDSPELRELSEQSAA 255


>gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis PB1/+]
 gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 58/367 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG----- 66
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++  G     
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFIARGVTPRVMDTRINPP---GLDQLPESVEQHVGDLNQE 61

Query: 67  ------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                 L+VV+  M  +  +LS       +++G +          ++A ++AITGS GK+
Sbjct: 62  WLLDADLIVVSPGMALAHPALSEAAEAGVEIIGDIELFC----RENQAPVVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T    +T  +  + K          +IGVP LTL +   D    + EL    L      T
Sbjct: 118 T----VTTLVGEMAKAAGWSVGVGGNIGVPALTLLKQ--DNQLTVLELSSFQLET----T 167

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237
           H +R   A I  +   H   +  G+++  +AK  ++E  +      +N DD+    +  A
Sbjct: 168 HSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VCIVNADDALTMPVRGA 224

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMA 293
            S  +      SFG     D+ L K +    + W+ V+    L  + M++     G H  
Sbjct: 225 DSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLS----GRHNY 270

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L +   +     +++KAL+ F    G   R++  L +     I++S   N  S 
Sbjct: 271 TNALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHGVRWINDSKATNVGST 327

Query: 354 KAAISVL 360
           +AA+  L
Sbjct: 328 EAALDGL 334


>gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
 gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
          Length = 516

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 3   PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           P     DL QA+ G  H  G    G V G  ID+R++   E F A+ G H  G  F   A
Sbjct: 18  PWVEVTDLAQAVGGTVHGDG----GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             +GAG V+ +   +A +  L IP   V DV     + A  A
Sbjct: 74  ASRGAGAVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIA 115


>gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAO1]
 gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 480

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 45/322 (13%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA ++VV++ +      VAS     IPV    ++L  L       R R  
Sbjct: 64  FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 117

Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  ++    A   +  T+         IG  L  A     +    +
Sbjct: 118 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTFV--------IGGRLNAAGTNAQLGASRY 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   
Sbjct: 167 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 224

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
           +  DD    E+L   +     +   ++G S++AD +    +Q   ++W  V + + + ++
Sbjct: 225 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 280 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 336

Query: 339 FTLIDESYNANPASMKAAISVL 360
             L+D+ Y  +P  + A I  +
Sbjct: 337 VMLVDD-YGHHPREVAAVIKAI 357


>gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
 gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
          Length = 459

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 56/397 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129
           N + V+S+    IP+    ++LG L        + +    IA++G+ GKTTT  ML+ I 
Sbjct: 86  NPEYVSSV-EKKIPMMTRAELLGEL--------MENYKHSIAVSGTHGKTTTTSMLSYIL 136

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL---VRPHI 186
           +++       +G    HIG  + + R            G + L E    T+    ++P +
Sbjct: 137 MAANTDPTISLGGMLAHIGGNIRVGR------------GQTFLTEACEYTNSFLELKPLV 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG--I 244
            +I  +   HL  F  +++I  +      G+++ GT+ +N+       ++ K + +G   
Sbjct: 185 GIILNVEADHLDFFKDLDDIRLSFRRFASGIKEGGTLVINHS------IQDKEYIIGDFK 238

Query: 245 KTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
            T+ +FG  ++ D   R            EV  + + +  V   + G H   N L  +  
Sbjct: 239 GTVITFG--EDGDMHARNIAYDALGNPGFEVYYKDEKLGDVQLLVPGKHNVDNALAAIAT 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D   AIK   V +    R  +Y+   N    T+ID+ Y  +P  ++A ++    
Sbjct: 297 AYSIGIDF-AAIKQGLVSYSGVDRRFQYKGKCNGA--TVIDD-YAHHPQEIEATLNAAKH 352

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R IA+L +  +  E     + D+  +  +Y    V  +G     
Sbjct: 353 YPHKKLYVVFQPHTYSRTIALLPEFAKALE-----NADVVILAKIYAAREVNTTGVSAED 407

Query: 414 LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   + +S +   Y  T + +  +++S L +GD+ + 
Sbjct: 408 ISKLMNQSKVTSFYLPTFEEIVDYLRSHLEEGDLCIT 444


>gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
 gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 152 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 265 PTI-TYGRSEESNYQV 279


>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 24/228 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR + P   F AI+G + DGH +I  AV+  A + +V  ++  S  S  +   
Sbjct: 25  VGSICFDSRKVGPNAVFVAIRGFNTDGHQYINQAVEADA-MAIVCEEIPKSWSSHQL-FL 82

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V D   AL K  +A R    A+    +I +TG+ GKTTT  M+   L + +     IG+
Sbjct: 83  KVWDSREALAK--IAKRFYENASDELKVIGVTGTNGKTTTTGMIKCILDANEIKTGLIGT 140

Query: 143 YNNHIGVPL-TLARMPVD-----------VDFGIFELGM---SHLGEIRFLTHLVRPHIA 187
               IG  L  L R   D           ++ G   + M   SH   ++  T  +R  IA
Sbjct: 141 TGYIIGNQLYELDRTTPDALELHQLFHKMLEAGCRAVVMEVSSHALALK-RTAGIRFDIA 199

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           V T +   HL     +   A AK  +F+ L ++    +N DD + E +
Sbjct: 200 VFTNLTHDHLDFHGSMTAYADAKKLLFDNLSESAFAVINADDDYAEKM 247


>gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 36/221 (16%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +N   VA  +      I ITG+ GKTT   +L+  L            +  +IG P
Sbjct: 104 VIGEIN---VAWEILKDTNWIGITGTNGKTTVTHLLSHMLCDT----GLYAPFAGNIGTP 156

Query: 151 LTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           L     ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   
Sbjct: 157 LCKYAHSKKHEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYF 212

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----ALGIKTIYSFGKSK--NADFQLR 261
           + K  +   LEK+     NYDD        ++H    + G+    SF KS   + D+ + 
Sbjct: 213 NIKKSL---LEKSDFRIYNYDDK-----NLRNHYTSLSRGVWITTSFDKSNLIHCDYWI- 263

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301
                 +Q+++ V+   K  ++ H  + G H  QN+L+ + 
Sbjct: 264 -----DDQAYI-VERGKKLFKLEHFSLKGMHNLQNLLLVIA 298


>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 437

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 137/363 (37%), Gaps = 71/363 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T    +T  +  + K          +IG+P  L+ +  D D  + EL  
Sbjct: 108 IVGITGSNGKST----VTTLVYEMAKAAGIKVGMGGNIGIP-ALSLLNEDCDLYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+   E   T  +N +D
Sbjct: 163 FQLET----TNSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYYNAE---TAVVNLED 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                              +FG+ +N   ++  + +     W++ +  GK   +    + 
Sbjct: 216 KL-----------------TFGEGENQAKKVVSFAENQADYWLKTE-NGKQYLMAKEEVI 257

Query: 289 ---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N+L    +   +  +++    AL  F   +G   R++ A      
Sbjct: 258 LPCDEAILVGRHNYMNILAATALAQAVDINLEAIRIALRQF---KGLDHRFQLAYQTNGV 314

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG    +LG      D  E+ +L    HI   
Sbjct: 315 RWINDSKATNVGSTVAALAGL-----YVEGTLHLLLGGDGKGADFSELADLINQPHI--- 366

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              S Y        G  + AL      S   H  ETM     F++  L  GD+V++  S 
Sbjct: 367 ---STYCFGR---DGKQLAAL------SSQSHLFETMQQAISFLRPRLKSGDMVLL--SP 412

Query: 454 SCG 456
           +C 
Sbjct: 413 ACA 415


>gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
 gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 82  SIPV--FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++P+  + V+  +    ++ +A R  +     AITG+ GKTT   ML   L   KK  A 
Sbjct: 75  TVPIVRYFVEHEIAIYTEIEIAYRYANGFRYGAITGTNGKTTITTMLYEMLK--KKGQAI 132

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSH---LGEIRFLTHLVRPHIAVITTIAPAH 196
           +     +IG PL+   +  + +     L +S+   LG  +F      P ++V+  +AP H
Sbjct: 133 VAG---NIGYPLSELALRYEDEVKDVALELSNFQLLGIEQFA-----PTVSVVCNLAPDH 184

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           L     +E   ++K  I+E  ++      N DD
Sbjct: 185 LDYMPSVESYYASKMRIYENCKEDAWFLRNLDD 217


>gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
 gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
          Length = 509

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 48  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 160 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215

Query: 187 AVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 272

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 273 PTI-TYGRSEESNYQV 287


>gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 438

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 35/261 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIAITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155

Query: 166 ELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            L +S    E  F    V    A I  +   H+  +  G+++  +AK  I+E  +   T 
Sbjct: 156 VLELSSFQLETTFSLQAV---AATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG     D+ L + +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPVRGAD-----ERCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M +     G H   N L  L +         +++KAL+ F    G   R++        
Sbjct: 261 EMPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVQEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVL 360
             I++S   N  S +AA++ L
Sbjct: 314 RWINDSKATNVGSTEAALNGL 334


>gi|88799422|ref|ZP_01114999.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
 gi|88777732|gb|EAR08930.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
          Length = 480

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 144/365 (39%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++T  +          G Y+    IG  L  A     +    + + 
Sbjct: 121 IAIAGTHGKTTTTSLMTAVMGR--------GEYDPTFIIGGRLNSAGSNARLGTSRYLIA 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P  A++T I   H+  + G  E +     E    +   G + L  
Sbjct: 173 EADESDASFL-HL-QPMTAIVTNIDADHMETYCGDFERLKQTYVEFLHNVPFYGLVVLCT 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286
           DD     +         + + S+G +  AD +    ++   Q+   V   G  S+++   
Sbjct: 231 DDDNVRSILPSIQ----RQVMSYGFNDTADVRAIDIEKKGLQTNFTVLRSGLPSLKIELK 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L  + + +         +K L+ F   +G G+R++     +  +G   L+
Sbjct: 287 MPGDHNVLNALAVIAVATDEGVPDHEIVKGLNGF---DGVGRRFQVNGEFSTPKGDVLLV 343

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  ++     +    P    RR+  L         ++  + D  +VLS  ++ 
Sbjct: 344 DD-YGHHPRELQVTFDAIRTGWPE---RRLVALFQPHRYSR-TRDLYEDFVDVLSKVDVL 398

Query: 402 --SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
               V+ +G   +   D  +L RSI         + E  D +F  +   L DGD+++ + 
Sbjct: 399 LLLDVYPAGEEPINGADGRSLCRSIRQRGRVDPVFIEDKDSIFSVLPDVLQDGDILLTQG 458

Query: 452 SNSCG 456
           +   G
Sbjct: 459 AGDVG 463


>gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 491

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 145/396 (36%), Gaps = 49/396 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSI 83
             +G  +D+  + P   + A+ G    G + +  A+ +GA  V+V     A         
Sbjct: 23  ITSGPCLDADRVTPGSLYVALPGHRAGGPEALGEALARGAAAVLVEGPDPAGHRPADTGA 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALS-SIKKTYA 138
            V  V D    +    V+AR   +      ++A+TG+ GKT+   M    L+ S      
Sbjct: 83  CVVRVPDAR--IATALVSARYHGEPGRAMDVVAVTGTNGKTSVSSMYESLLTLSEGARVG 140

Query: 139 CIGSYNNHIG-VPLTLAR----MPVDVDFGIFELGMSHLG---------EIRFLTHLVRP 184
            IG+    +G  P+ + R     P   D       M   G          +  L H V  
Sbjct: 141 VIGTSGARVGGAPIPMPRSVLSTPESPDLQYLLACMRDRGGDSVVLEATSMGLLNHRVDG 200

Query: 185 ---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               + V T +   HL +   +E    AK  +F+G+ +   +  N DD     + A   A
Sbjct: 201 SFVDVGVFTNLTQDHLDDHGTMESYTRAKMLLFQGMCRRAVV--NADDP----VGAAIPA 254

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L    + ++    +AD++       S  +   +   G+         G     N L  + 
Sbjct: 255 LMPGAVTTYAVDADADYRATDLVVDSSGTRFVLHHDGRKYPAAIPVPGRFSVSNALAAVA 314

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  D+D  + AL       GR + +     +G   ++D  Y  +P S+   +  + 
Sbjct: 315 ACHVLGHDLDALVDALDRMPQIPGRFEHF--GTPEGVSVIVD--YAHSPDSLDKVLCTIR 370

Query: 362 QISPHGEGRRIAVL----GD-----MCEMGELSQSF 388
             +P    RR+  +    GD        MGE++ ++
Sbjct: 371 GFAP----RRVLTVFGCGGDRDTTKRARMGEIAATY 402


>gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 427

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 36/258 (13%)

Query: 106 SKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDF 162
           ++  +IAITGS GK+T   ++   IA + +K     +G   N IG P L L + P  +D 
Sbjct: 95  AQVPVIAITGSNGKSTVTTLVGEMIAEAGLK-----VGVGGN-IGTPALELLKQP--MDL 146

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI    + +  
Sbjct: 147 CVLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIH---QHSQH 199

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +N DD       A++     +   SFG   N       + +C       + L G+ + 
Sbjct: 200 ILINRDD-------AQTLPDVGQVWQSFGLDCNG------YGRCELDGRHWLTLHGEPLL 246

Query: 283 VVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V     +G H   N L  + +   +    +  ++ L  F   EG   R R         
Sbjct: 247 AVDEMKIVGAHNQANALAAMALCDAVGIPREPQLRVLRRF---EGLPHRARFVREVNGVR 303

Query: 341 LIDESYNANPASMKAAIS 358
            I++S   N  +  AA++
Sbjct: 304 WINDSKATNVGATLAAVA 321


>gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas
           atlantica T6c]
 gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 530

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG------- 79
           +  + +DSR +A   AF A+KG   DG DFI  A+  GA +++   +  A  G       
Sbjct: 46  IESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAEHGHTSMREQ 105

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           SL I  + +   L AL         +S   +I +TG+ GKT+T ++ +   + + K  A 
Sbjct: 106 SLIISFYDLSAQLSALAAAFYGYPAKS-IQVIGVTGTNGKTSTVQLTSQLAALLNKRAAS 164

Query: 140 IGS 142
           IG+
Sbjct: 165 IGT 167


>gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 516

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 3   PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           P     DL QA+ G  H  G    G V G  ID+R++   E F A+ G H  G  F   A
Sbjct: 18  PWVEVTDLAQAVGGTVHGDG----GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             +GAG V+ +   +A +  L IP   V DV     + A  A
Sbjct: 74  ASRGAGAVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIA 115


>gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 487

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 148/372 (39%), Gaps = 33/372 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGS 80
           + GI++DSR +     F A+ G    G +FI +A++  AG ++  TD V +      + +
Sbjct: 16  ITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAIL--TDAVGAEIAADELAN 73

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATII-AITGSVGKTTTKEMLT-----IALSSIK 134
               +   DD   AL   A A    ++  I+ A+TG+ GKT+    +      + L ++ 
Sbjct: 74  SDAAIIVTDDPRSAL-AFASALYFGAQPQIMTAVTGTNGKTSVSTFVRQIWNLLDLEAVN 132

Query: 135 -KTYACIGSYNNHIG----VPLTLAR-MPVDVDFGIFELGM---SHLGEIRFLTHLVRPH 185
             T    GS +  +      P+TL R +   V  GI    M   SH  + R L   V   
Sbjct: 133 LGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGLDQRRLDG-VNLA 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T     HL      E    AK  +F   L+  G   +N DD     +   + A G 
Sbjct: 192 AAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGAEVAMIAQAHGH 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I   G+   AD  L   +      ++  +   +  +   + IG   A+N+L+  G+V 
Sbjct: 252 ELI-GVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAENVLLAAGLVI 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D       L       GR +      N G    +D  Y   P +++ A   L  + 
Sbjct: 311 ACGEDPARVFDTLGDLETVHGRMQLAATRTN-GAAVFVD--YAHTPDAVETA---LKAMR 364

Query: 365 PHGEGRRIAVLG 376
           PH  GR +A++G
Sbjct: 365 PHVMGRLVALIG 376


>gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
 gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
          Length = 460

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 22/260 (8%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+  I + +       IG   +++     L +       G F +  
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEADADPTVIIGGEVDYLKGSSCLGK-------GHFSVVE 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   +RPH  VIT I   H+ ++  ++ + +A  E  E L ++G   +  D+
Sbjct: 161 ADESDGSFLK--LRPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPESGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                + ++ +    +   ++G S N D+  +           +V  +G ++E +   + 
Sbjct: 219 ENIRYIMSRVN----RNFITYGLSDNNDYVAKNIHYVDSTLVYDVYHKGVNIERIRLRVP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G H   N L    IV+     V+T I  K L  F    G  +R+    +     ++D+ Y
Sbjct: 275 GEHNVLNSLAAF-IVAHDCCGVETRIITKGLGKF---IGAKRRFETKGHVAGVWVVDD-Y 329

Query: 347 NANPASMKAAISVLSQISPH 366
             +P  +KA +    ++  H
Sbjct: 330 AHHPTEIKATLKAAKELEKH 349


>gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440]
 gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440]
 gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1]
          Length = 482

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L    A   +  T+         IG  LT A     +    + + 
Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +  +      +   ++G S+ AD +    +Q   Q+   V  + +  +EV  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDREPLEVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNALATIAIATDEGITDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL   N+ 
Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWP---SRRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451
               V+ +G   +   D+      +     +D +++         ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILLCQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDVG 461


>gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 540

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 22/212 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR++     FFA++G H  G  +I  A+  GA  +V +  +   +  + +   
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLDTYV--VGVYYA 83

Query: 87  GVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL+  A A     ++A T+I +TG+ GK++T   +   L    K    I +  
Sbjct: 84  RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143

Query: 145 NHIG---VP----------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186
             +G   +P          LT+ R+  ++     +F + E     L         V   +
Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           AV   +   HL      E+    KA +F  L+
Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALD 235


>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
 gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
          Length = 499

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 162/393 (41%), Gaps = 38/393 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL+A     +    Q  +  ++ DSR++     FF ++G H DGH+F   A + GA  +
Sbjct: 6   DLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAENGAAAI 65

Query: 69  VVNTDM-VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEM 125
           +    + VAS     + +  V D   A+  +          K  +IA+TG+ GKTTT  +
Sbjct: 66  IAEKKIDVAS----DVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGKTTTTHV 121

Query: 126 LTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVD-----FGIFELGMSHLGEIRF 177
           ++  L  +      IG+ +  IG   +P T    P  +D     + + +  ++H+  +  
Sbjct: 122 ISHILHHVGYKTGVIGTVHALIGDKEIP-THNTTPDVIDLQRILYQMLKENVTHVC-MEV 179

Query: 178 LTH-LVRPHI-------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------ 223
            +H LV   +       AV T +   HL     ++  A AK+ +F+ +     I      
Sbjct: 180 SSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQIKDGKSA 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           ++N DD +  ++           + ++G + N D +        + S  ++QL  K   +
Sbjct: 240 WINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLGEKRYVI 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG     N++  +G       D+     ALS F    GR +       Q F  ++D
Sbjct: 300 KTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELIE--EGQSFSVVVD 357

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P  ++  ++   +I+   +GR I   G
Sbjct: 358 --YAHTPDGLEKILTTAKEIA---KGRLITCFG 385


>gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
 gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
          Length = 492

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 148/378 (39%), Gaps = 48/378 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F A+ G   DG  F   A   GA  V         +   +  + 
Sbjct: 27  VAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPEDLPEATAWIE 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+    
Sbjct: 87  -VADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASLGTVGIV 145

Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
                        + + +  TLAR+    D GI +L M   SH  E R L   V    A 
Sbjct: 146 TNRGAQYGSLTTPDPVTLHETLARL---ADEGITDLAMEASSHGIEQRRLDG-VELTAAA 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG--IK 245
            T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G  I+
Sbjct: 202 FTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAIR 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T       +  DF +R  +  +E     + L   GK   V    +G    +N L+  G+ 
Sbjct: 262 TT-----GRGGDF-IRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 304 SILTA-DVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               A   D A     VF   EG     G+  R     G   L+D  Y   P +++    
Sbjct: 316 LATPAGQADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---H 366

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS + P   GR + V G
Sbjct: 367 VLSALRPFASGRLVVVFG 384


>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
          Length = 443

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 145/358 (40%), Gaps = 57/358 (15%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQ--KGAGLV 68
           H +GI P      + +DSR   P     A + P  +    G D  +++ A Q     G+ 
Sbjct: 24  HGLGITP------LVMDSRQQPPGADKLAAEFPDVELISGGFDCRYLVQATQIIVSPGIA 77

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +   ++ A+I  + I      +V+G +   A A + R  A +I ITGS GK+T   ++  
Sbjct: 78  IDTPEIRAAI-DMDI------EVIGDVELFARAVKERD-ACVIGITGSNGKSTVTTLVAE 129

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              +    YA  G    +IG+P+ L  +  D++  + EL    L      TH +    A 
Sbjct: 130 MAKAAGINYAVGG----NIGIPV-LDLLQSDIELYVLELSSFQLET----THSLNCISAT 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              I+  H+  +S IE    AK  ++    +T     N +D   EL K K          
Sbjct: 181 CLNISEDHMDRYSDIEAYRQAKLRLY---SQTRFALFNRED---ELTKPKDP----MNQN 230

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVS 304
           SFG S   +    +W  C      E ++   S+EV+       +G H   N++  + +  
Sbjct: 231 SFGLSLPDN---DEWGVC------EGKIVHGSVEVISLQDVALVGSHNHANLIAAMALAY 281

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
               +    ++  S F    G   R+   +N+     I++S   N  +  AAI  +S+
Sbjct: 282 QAGIEKAAMVEVASSF---TGLEHRFEMVVNRNGVAYINDSKATNVGATVAAIEGISE 336


>gi|330955586|gb|EGH55846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 122

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 4/49 (8%)

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+GE ++  H ++
Sbjct: 1   DTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGEWAEQGHREV 45


>gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 33/296 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI+GS GKTTT  M++    ++ +  T   IG      G+  T     V    G  EL 
Sbjct: 109 IAISGSHGKTTTTSMISHISHIAGLDPT-VLIG------GILQTFGSNAV---LGKSELL 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S   E       +   I V+T I   H+  +   E+I  A  +    +   G   +N D
Sbjct: 159 ISEADESDGSFLKLNSVINVVTNIDKEHIGYYKDYEDIKEAFVKFINNVPFYGASVVNID 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    + +K H    K I ++G  ++ DFQ +     S+ +  +V  +G  +  +   I
Sbjct: 219 DTGVRSILSKIH----KKIITYG-IESGDFQAKNIVFNSDNTRFDVFYKGIKLNTIELQI 273

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L ++ + +++  +      AL  F       KR    + +    LI + Y 
Sbjct: 274 PGIHNVYNALASIAVSTLMEIEQPVIRDALKSFK----NAKRRIEFVGEKNTNLIYDDYG 329

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM-GELSQSFHIDL 392
            +P  +K+    L              PH   R   ++ D  ++   L + F +D+
Sbjct: 330 HHPTEIKSVYEALKSKYKDKNIVVVFQPHRYSRTYYLIDDFVDLFKSLDKVFLLDI 385


>gi|86140625|ref|ZP_01059184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832567|gb|EAQ51016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
          Length = 444

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  ++++  AAR  +KAT++ ITGS GKTTT  ++   L          G+  +     +
Sbjct: 87  ISVISEIEFAARY-TKATLVGITGSNGKTTTTMLMAHLLKQAGLKSVAAGNIGDSFAKWV 145

Query: 152 TLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
            L     D DF   E+    L G + F      PHIA++T I P HL  +    E    +
Sbjct: 146 ALD----DQDFYALEISSFQLDGIVDFA-----PHIAILTNITPDHLDRYEYKFENYIKS 196

Query: 210 KAEIFEGLEKTGTIFLNYDD 229
           K  I E   +   +  + DD
Sbjct: 197 KFRIAENQTEKDYLIYDADD 216


>gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
 gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
          Length = 455

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFE 166
           +I ITGS GKTTT  M    L +  K     G+    +   +  A +P D   V+   F+
Sbjct: 113 MIGITGSNGKTTTTTMTASMLENSPKNPKAAGNIG-EVASKVADASLPEDILVVELSSFQ 171

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L     G  RF     +PHIAV   +  AHL     +++ A AKA IF    K   +  N
Sbjct: 172 LQ----GTNRF-----KPHIAVFLNLIEAHLDYHGTMDDYAQAKARIFRNQSKDDVLIYN 222

Query: 227 YDDSFFELLKAKSHALGI 244
            DD     L  ++ +  I
Sbjct: 223 ADDPLVSSLAEQADSTCI 240


>gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G      +
Sbjct: 25  VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGLVRYQQN 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A +G+
Sbjct: 85  VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 144

Query: 143 YNN 145
             N
Sbjct: 145 TGN 147


>gi|329895281|ref|ZP_08270923.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
 gi|328922403|gb|EGG29746.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 40/270 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M+    A + +  TY  IG   N  G                 +LG
Sbjct: 119 IAVAGTHGKTTTTSMIASVFAAAGLDPTY-VIGGRVNQSG--------------SNAKLG 163

Query: 169 MSHL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKT 220
            SH         +  FL HL  P ++V+T I   H+  + G ++++     E    L   
Sbjct: 164 ASHYLIAEADESDASFL-HLT-PMVSVVTNIEADHMDTYGGDLQQLRKTFIEFLHNLPFY 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G+  L  DD   + L  + +    ++I ++G+  +AD+ +R  K     S  ++Q     
Sbjct: 222 GSAVLCLDDPEIKALIPQIN----RSILTYGQDPDADYCIRSIKAAGAASDFQLQTPNHG 277

Query: 281 MEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALN 335
           +  +  +  G H   N   T  +       +      L+ F    G G+R+    R    
Sbjct: 278 VLALRVNSPGLHNVLNAAATAAVALDEGLPIAAVQDGLANF---AGVGRRFEQLGRLQHA 334

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISP 365
           +G   L+D+ Y  +P  ++A ++  +Q+ P
Sbjct: 335 RGQAVLVDD-YGHHPTEVEATLNSAAQVWP 363


>gi|242243000|ref|ZP_04797445.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           W23144]
 gi|242233601|gb|EES35913.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           W23144]
          Length = 437

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 128/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  D   +  +   + +  +V +QG+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIQGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +  E   L+++  + L
Sbjct: 311 DD-YAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLNKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|217076584|ref|YP_002334300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
 gi|226722950|sp|B7IFU5|MURD_THEAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|217036437|gb|ACJ74959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELG 168
           +IA+TGSVGK+TT  M+   L+  K+T         +IG+P+  L    +  D+ + E+ 
Sbjct: 107 VIAVTGSVGKSTTVSMIQHVLNKYKRTLLA-----GNIGIPIAKLLNDDLRADYLVLEVS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              L    F +   +P+I+ I  I P HL+
Sbjct: 162 SFQL----FWSDKFKPNISSILNIYPNHLN 187


>gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 20/200 (10%)

Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +KK Y  +    N IG+P   T+     +  F + E+    L  I++     +P +  I 
Sbjct: 102 LKKQYEDVVVCGN-IGLPFIDTIETSSKNTIF-VLEISSFQLETIKYF----KPKVGCIL 155

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL+    +E    AK  IFE +++ G   LNYD++    L     A G   ++S 
Sbjct: 156 NITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDLIG--LAKGNVIVFSK 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306
            KS+  +          E+  +    +GK+ EV+        G H  +N L  +      
Sbjct: 214 NKSQFENMVF------VEKDTIYFTFEGKTQEVMKKDEIFIPGEHNLENALAAISCTLPF 267

Query: 307 TADVDTAIKALSVFHPKEGR 326
             + DT  + L  F   E R
Sbjct: 268 GIEKDTIEQVLKTFRGVEHR 287


>gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
 gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +   P   ++ +SIDSR++   + F  + G   D H FI  A   GA
Sbjct: 5   TVKEILEATGGRLLCGSPDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
                +   V        P   V D   AL  L    R R K  ++ ITG
Sbjct: 65  AATFTSEHDVMEDNR---PWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111


>gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
 gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 20/223 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR    + AF A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 23  IESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFED----QKRVF 78

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
            I  P         +D       +S+  + + L   V  H             +A+ + +
Sbjct: 139 GI-YPNLRESTHTTLDILSLYQTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 239


>gi|160936902|ref|ZP_02084266.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440092|gb|EDP17839.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-F 165
           +  II ITG+ GK+T   +L   L         +G+    IG+P       V  D  I F
Sbjct: 104 RDQIIGITGTKGKSTVTTLLYHLLKQAGMDALLVGN----IGIPALDHMEEVKPDTRIVF 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L    ++T  V PHI ++  I   HL ++  +E+   AK  IF+       +  
Sbjct: 160 ELSCHQL---EYMT--VSPHIGILVNIHEEHLDHYGTMEKYVEAKHHIFKNQGPDDILIC 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N       L +  +   G+      G  K  D          EQ    V  +GKS  +  
Sbjct: 215 NVQC----LPEEGTCPSGLIRAGMDGSGKELDV-------VQEQDGTWVHFRGKSFCIPT 263

Query: 286 HGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             I   G H   ++ +  G+ SIL  D     + L  + P
Sbjct: 264 DEIKLLGQHNYFDIGVAYGVCSILGMDDQVFARGLKTYEP 303


>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
 gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
          Length = 454

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 75/174 (43%), Gaps = 19/174 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +++++V +     I VFG         ++  A R  SKA I AITG+ GKTTT  +L 
Sbjct: 78  VPIDSEIVKTAHQKKIEVFG---------EVEFAYRF-SKAPIYAITGTNGKTTTTSLLG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +  +     G    +IG PL  A M   + DF + E+    L  I+      +P I
Sbjct: 128 EMFKNTGRKVYVAG----NIGYPLIYAVMEAAEDDFIVAEISSFQLETIKEF----KPKI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + I  I P HL      E     K  IFE   +     LNYDD     LK K+ 
Sbjct: 180 SCIINITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNYDDPVTWNLKNKAK 233


>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
 gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 25/260 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  ML   +    K +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLAFEMLKEGKKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   + +P IA    +  AHL      EE   AKA IF+   +T    
Sbjct: 162 EVVVTELSSFQLMGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+    L A+S   G K ++S  K      ++       E +   +  +G+ +  V
Sbjct: 222 INADDADVMTLSAQSK--GQKVLFSTTK------EIEDGAYIKENA---LYFKGEKVAEV 270

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNRKFY--- 327

Query: 343 DESYNANPASMKAAISVLSQ 362
           ++S   N  + + A+S  +Q
Sbjct: 328 NDSKATNMLATEKALSAFTQ 347


>gi|56476229|ref|YP_157818.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aromatoleum
           aromaticum EbN1]
 gi|62900474|sp|Q5P6Z4|MURD_AZOSE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56312272|emb|CAI06917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9), gene:
           MURD OR NE0989 [Aromatoleum aromaticum EbN1]
          Length = 466

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H + P  A +  +   HL  ++G++E A+ KA IFEG    G   LN DD+     +  +
Sbjct: 185 HALDPEAATVLNVTDDHLDRYAGLDEYAATKAAIFEG---RGVQVLNRDDA-----RVAA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
            AL  +++  FG S  A        + +  +W+
Sbjct: 237 MALPGRSLIRFGASAPAATDDYGLVEVAGAAWL 269


>gi|300790444|ref|YP_003770735.1| UDP-N-acetylmuramyl tripeptide synthase [Amycolatopsis mediterranei
           U32]
 gi|299799958|gb|ADJ50333.1| UDP-N-acetylmuramyl tripeptide synthase [Amycolatopsis mediterranei
           U32]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 14/158 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL  + T++ +TG+ GKTTT  MLT AL ++ +  A     N   GV   L   P D  +
Sbjct: 37  RLGRERTVVIVTGTNGKTTTSLMLTRALETLAEVAANSDGSNMPDGVLAALTACP-DAPY 95

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221
            + E+  ++   + ++   VRP + V+  ++   L     + E+ + + ++   + E  G
Sbjct: 96  AVLEVDETY---VPWVADQVRPAVLVLLNLSRDQLDR---VGEVRATERDLRAAIAELPG 149

Query: 222 TIFL-NYDDSFFELLKAKSHALGIKTIY-SFGKSKNAD 257
           T+ + N DD    +L   + ++  K ++ S G+    D
Sbjct: 150 TVVVANCDD----VLVTSAASVAAKLVWVSTGRRWTGD 183


>gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
 gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
          Length = 438

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 151/355 (42%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D +  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDAERELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGINM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +         +++KAL+ F    G   R++  LN     
Sbjct: 262 MTLT----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLNHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +  + L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           I    L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 365 IR---LYCFGRDGAQLAALRPEAAEQTETMEQAMRLLAPRVKPGDMVLL--SPAC 414


>gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
          Length = 467

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 52/373 (13%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G + +A  Q+R     +    M    ++     +++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVQARDGKMHFTAMREDAAPLDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-------CALNQ 336
             +  G H  QN L  + I + L        +AL+ F+   G G+R++        A  Q
Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFN---GVGRRFQRYGEVPVIADGQ 327

Query: 337 --GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G +TL+D+ Y  +P  M A ++      P   GRR+ +             F  D  +
Sbjct: 328 AAGTYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVK 382

Query: 395 VLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVD 443
           VLS  +   ++ V+ +G   +   D  AL R++ V       + +T+D +   + + + D
Sbjct: 383 VLSTVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAVVRD 442

Query: 444 GDVVVVKSSNSCG 456
           GDVV+   + S G
Sbjct: 443 GDVVITMGAGSIG 455


>gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. novicida U112]
 gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella novicida U112]
 gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 20/223 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ + +DSR    + AF A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 23  IDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFEDQKC----VF 78

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
            I  P         +D       +S+  + + L   V  H             +A+ + +
Sbjct: 139 GI-YPDLKESTHTTLDILSLYKTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIVNIDDEYGQRL 239


>gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardia farcinica IFM 10152]
 gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Nocardia farcinica IFM
           10152]
          Length = 536

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 167/405 (41%), Gaps = 49/405 (12%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            PL T  +L  A   H+   VP   V  GI   S ++ P + F A+ G H  G  F   A
Sbjct: 30  TPLTTVLELTGA---HAAAPVPADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDA 86

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD---DVLGALNKLAVAARLRSKATIIAITGSV 117
           V +GA  V  + +    +  L++PV   +   +VLG L+  AV  +   +  +I ITG+ 
Sbjct: 87  VARGAVAVFTDAEGARVLDGLTVPVLVRERPREVLGELSA-AVYGQPSQRLRLIGITGTS 145

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VP--LTLARMP-------VDVDFGIF 165
           GKTTT  ++   L++   + A IG+    IG   VP  LT    P       + V+ G+ 
Sbjct: 146 GKTTTSYLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQ 205

Query: 166 ELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            + M   SH   LG +      VR  +   T ++  HL   +  E+  +AK  +FE    
Sbjct: 206 AVVMEVSSHALALGRV----DGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSP 261

Query: 220 TG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQ 275
               T  +  DD++   L     A G+    +   +  AD+++        +EQ +    
Sbjct: 262 VAARTAVVCVDDAWGRRL-----AEGLAAPITVSTTGEADWRVAGGVATVGAEQEFTAAG 316

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G+    +     Y++A  +L      +        A    +V  P    G+  R    
Sbjct: 317 PAGELGVRLRLPGRYNVANALLAVAVCAAARADPAVAAPALATVDVP----GRMQRVERG 372

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ----ISPHGEGRRIAVLG 376
           Q F  ++D  Y   PA++++ I+ L +      P   GR   V+G
Sbjct: 373 QDFLAVVD--YAHKPAALESVIATLREHLAAADPEHPGRLAVVVG 415


>gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
 gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
          Length = 493

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G      +
Sbjct: 25  VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGLVRYQQN 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A +G+
Sbjct: 85  VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 144

Query: 143 YNN 145
             N
Sbjct: 145 TGN 147


>gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 481

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH        F + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK-KEYLLSAISQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 120/298 (40%), Gaps = 35/298 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +++   +IAI+G+ GKTTT  M+   L       AC   YN  I V   + ++  +   G
Sbjct: 98  MKNFKNVIAISGTHGKTTTTSMIGYILKK-----AC---YNPTILVGAFVKQLGGNFVIG 149

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  +    E    FL     P I VI  I   HL  F  I+ I ++  +  + +  +G
Sbjct: 150 SKEYLVVEACEYVDSFLK--FNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSG 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N DD   + + +K H      +      + AD        C++  + E  ++  + 
Sbjct: 208 FLVANCDDKNVKDVISKLHT----QVVCISTKEKADI-FAGNISCND-GYYEFDVKNNND 261

Query: 282 EVVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           E++ H      G+H   N L    + S L  +  T   ALS F    G  +R        
Sbjct: 262 EILAHIKLNIPGFHNVYNALAAFAVTSKLGVESLTIEHALSEFC---GASRRLEKVGEFD 318

Query: 338 FFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQ 386
              L D+ Y  +P  +KA ++ L ++S         PH   R  ++L +  E  +L+ 
Sbjct: 319 GIYLFDD-YAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLKLAD 375


>gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
 gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
          Length = 493

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G      +
Sbjct: 25  VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGLVRYQQN 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           + +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A +G+
Sbjct: 85  VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 144

Query: 143 YNN 145
             N
Sbjct: 145 TGN 147


>gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 438

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 58/367 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG----- 66
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++  G     
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFIARGVTPRVMDTRINPP---GLDQLPESVEQHVGDLNQE 61

Query: 67  ------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                 L+VV+  M  +  +LS       +++G +          ++A ++AITGS GK+
Sbjct: 62  WLLDADLIVVSPGMALAHPALSEAAEAGVEIIGDIELFC----RENQAPVVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T    +T  +  + K          +IGVP LTL +   D    + EL    L      T
Sbjct: 118 T----VTTLVGEMAKAAGWSVGVGGNIGVPALTLLKQ--DNQLTVLELSSFQLET----T 167

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237
           H +R   A I  +   H   +  G+++  +AK  ++E  +      +N DD+    +  A
Sbjct: 168 HSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VCVVNADDALTMPVRGA 224

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMA 293
            S  +      SFG     D+ L K +    + W+ V+    L  + M++     G H  
Sbjct: 225 DSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLS----GRHNY 270

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L +   +     +++KAL+ F    G   R++  L +     I++S   N  S 
Sbjct: 271 TNALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHGVRWINDSKATNVGST 327

Query: 354 KAAISVL 360
           +AA+  L
Sbjct: 328 EAALDGL 334


>gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
 gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
          Length = 491

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A+IT I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIITNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
 gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      + GM+HL        + T  V      +
Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMAEA----VKNGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LLK  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLKETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+S+ +++Q+
Sbjct: 265 PTI-TYGRSEESNYQV 279


>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 24/192 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           P +  +D+ L  V  G  L V     V    SL I V G         +L +AAR   KA
Sbjct: 59  PEFSDNDYDLVVVSPGVPLSV---HPVVKAHSLGIEVIG---------ELELAARF-IKA 105

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFEL 167
            ++AITG+ GKTTT  ++      I +          +IG+PL       +V+ +G  ++
Sbjct: 106 PVVAITGTNGKTTTTSLI----GEIFRNNGIKTLVAGNIGLPLV-----TEVEKYGPGDI 156

Query: 168 GMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            ++ +   +  T +  RP++AVI  I P HL   + ++  A AKA I++    +    LN
Sbjct: 157 IVAEVSSFQLETTVHFRPNVAVILNITPDHLDRHATMQNYAQAKANIYKQQLSSDYTVLN 216

Query: 227 YDDSFFELLKAK 238
           YDDS    L  K
Sbjct: 217 YDDSLTASLAVK 228


>gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2]
 gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAb1]
          Length = 469

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 136/322 (42%), Gaps = 45/322 (13%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA ++VV++ +      VAS     IPV    ++L  L       R R  
Sbjct: 53  FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 106

Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           +
Sbjct: 107 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLG-------ASRY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   
Sbjct: 156 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 213

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
           +  DD    E+L   +     +   ++G S++AD +    +Q   ++W  V + + + ++
Sbjct: 214 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 268

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 269 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 325

Query: 339 FTLIDESYNANPASMKAAISVL 360
             L+D+ Y  +P  + A I  +
Sbjct: 326 VMLVDD-YGHHPREVAAVIKAI 346


>gi|261885649|ref|ZP_06009688.1| Mur ligase family protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
           S   I+ IT S GKT+ K  L   L      Y    S N   G+   +   +  +    I
Sbjct: 89  SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            E G    G+I+ +T  + PH  ++  I  AH+  F  IE + + + E
Sbjct: 149 AEAGARLKGDIKDITEFLEPHFVIVGEIGNAHIEYFKSIENVRALELE 196


>gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
 gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
          Length = 921

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              DLL A+     GI  P   +  +++DSR  A  + F AIKG   DG  +I  A+ +G
Sbjct: 431 NLSDLLGAL-----GIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQG 485

Query: 65  AGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA 99
              V+     VA+ G +     IP+  +D++   L+KLA
Sbjct: 486 VSAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLA 524


>gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp.
           X514]
 gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
 gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
          Length = 464

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 145/365 (39%), Gaps = 63/365 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ GS GKTTT  ++++ L  +                P  L    VDV  G  ++G S
Sbjct: 112 IAVAGSHGKTTTTSLISVILDGMGFD-------------PTVLVGGEVDVIGGNVKVGNS 158

Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                 F+T             P+IAVI  +   HL  F  I+ I  +  +    +   G
Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQ 277
            +    DD+    +    + L  K I ++G  +++D++ +      K C   +  +V  +
Sbjct: 215 FVVACKDDANTMYV---VNGLN-KNIVTYGIYQDSDWKAKSISFDDKGC---AIFDVYYK 267

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + M      I G H   N L  L +  ++  D+  A   L+ F   +G  +R+      
Sbjct: 268 EEYMGNFKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEVKGIV 324

Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              T++D+ Y  +PA +KA +          ++    PH   R  ++L D  E      S
Sbjct: 325 DGITIVDD-YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAE------S 377

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443
           F  D A+ + + +I         +++ KD +     R   V Y +  D +  ++  +   
Sbjct: 378 F--DNADKIIIADIYAAREKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKA 435

Query: 444 GDVVV 448
           GD+V+
Sbjct: 436 GDLVL 440


>gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi]
          Length = 523

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 22/212 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR++     FFA++G H  G  +I  A+  GA  +V +  +   +  + +   
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLDTYV--VGVYYA 83

Query: 87  GVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL+  A A     ++A T+I +TG+ GK++T   +   L    K    I +  
Sbjct: 84  RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143

Query: 145 NHIG---VP----------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186
             +G   +P          LT+ R+  ++     +F + E     L         V   +
Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           AV   +   HL      E+    KA +F  L+
Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALD 235


>gi|254362461|ref|ZP_04978569.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153094053|gb|EDN74965.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 475

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 182/434 (41%), Gaps = 72/434 (16%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV+T +      + +     IPV    ++L  +       R R  
Sbjct: 67  FIGHQAENIAGASVVVVSTAIDETNPEIIAAREARIPVIRRAEMLAEI------MRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IAI G+ GKTTT  M+++  +  K   T+   G       N H+G    L       
Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGKNAHLGASRYL------- 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
                 +  +   +  FL HL +P ++V+T I P H+  + G  E++          L  
Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278
            G   +  DD   E +   +  +G + + ++G S+NAD+++  ++Q   ++ +  V   G
Sbjct: 223 YGLAVMCADD---ETVMEIAPRVG-RQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSG 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCAL 334
           + ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+        
Sbjct: 279 ERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADF---QGAGRRFDQLGSFIR 335

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLA 393
             G   L+D+ Y  +P  +   I    Q +  G EG+R+ ++            F  +  
Sbjct: 336 PNGKIMLVDD-YGHHPTEVDVTI----QAARSGWEGKRVVMIFQPHRYSRTRDLFD-EFV 389

Query: 394 EVLSLYN---ISHVWLSGFHVLALKD--ALPRSIH-------VHYSETMDGLFLFIQSSL 441
           +VLS  +   +  V+ +G   +   D  AL RSI        +  S+T D L   +   +
Sbjct: 390 QVLSKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDT-DQLGEVLDQII 448

Query: 442 VDGDVVVVKSSNSC 455
            DGD+++ + + S 
Sbjct: 449 QDGDLILAQGAGSV 462


>gi|255320030|ref|ZP_05361226.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
 gi|255302898|gb|EET82119.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
          Length = 482

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 145/359 (40%), Gaps = 49/359 (13%)

Query: 56  FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA    K A ++VV+T +      V +     IPV    ++LG L       R R  
Sbjct: 71  FIGHAADNIKNASVLVVSTAIDPENPEVKAAIEQRIPVVRRAEMLGEL------MRYRHG 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +LT  L+   +  TY  IG   N  GV   L           +
Sbjct: 125 ---IAVAGTHGKTTTTSLLTCMLAEEGMDPTY-VIGGLLNRTGVNAALG-------ASRY 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL HL  P  A++T I   H+  + G  + +     +    L   G   
Sbjct: 174 IVAEADESDASFL-HL-EPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAV 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD+    +  +      + + ++G + + D +    +Q   +S   V  + +  + +
Sbjct: 232 VCGDDANIREIMPRI----ARPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRL 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQGF 338
             +  G H   N L  +G+ +      D AI +AL  F    G G+R++      L QG 
Sbjct: 288 TINQPGLHNVLNALAAIGVATDEGVS-DAAIGRALEGF---SGVGRRFQVQGEFGLEQGT 343

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             L+D+ Y  +P  ++A I    Q  P    RR+ ++            F  D  +VLS
Sbjct: 344 VKLVDD-YGHHPKEVEATIKAARQSHPD---RRLVMMFQPHRFSRTRDCFD-DFVDVLS 397


>gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
 gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
          Length = 496

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 21/230 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V       + +     P+
Sbjct: 18  LIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGASVLPLTDAPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++  L+   +A R   + +    ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 78  IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFEL--GMSHLGEIRFLTHLVRP--------HIA 187
           +        L   R+    P+ V   + +L  G +    +   +H +           IA
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           V+T ++  HL     +E   +AKA++F          +N DD F   L A
Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDDFGRRLAA 244


>gi|299534670|ref|ZP_07048002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
 gi|298730043|gb|EFI70586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 22/222 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A  I ITGS GKTTT  ++   LS   K     G+      V   +A+     D
Sbjct: 106 AFLISDAPFIGITGSNGKTTTTTLIFDMLSKGSKNPLIAGNIGT---VACGVAKEANQDD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+      +P IA++T +  AHL         A AK  +    + + 
Sbjct: 163 IIVTELSSFQLMGIKTF----KPKIAILTNLYDAHLDYHGTFNNYAEAKFGVTRNQDDSD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQG 278
               N D        A+SHA  I    S G++ N   AD     W+         + L G
Sbjct: 219 YFIYNADQPIVVGYAAQSHAQKIP-FSSKGRTANGISADETTIYWQGEPYMDRANIALPG 277

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           K           H  +N+L  +    ++  D +   + L+ F
Sbjct: 278 K-----------HNLENILAAVAACILVGCDKEKMEEVLATF 308


>gi|90424796|ref|YP_533166.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
 gi|109892731|sp|Q211T9|MURC_RHOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90106810|gb|ABD88847.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
          Length = 467

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 128/339 (37%), Gaps = 48/339 (14%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T +      L       IPV    ++L  L +L          + +AI G+ 
Sbjct: 66  GADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGTH 116

Query: 118 GKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L + +     I G   N  G   T AR+      G  E  +    E  
Sbjct: 117 GKTTTTSMVAALLDAGEFDPTVINGGIINAYG---TNARL------GAGEWMVVEADESD 167

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A  +  E +   G   +  D    + L 
Sbjct: 168 GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQEAFRDFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GIG 289
            K   +  + I ++G++  AD +L         S   V  + +     H          G
Sbjct: 228 GK---IEDRRIITYGENPQADVRLLDLTPNGGSSAFRVAFRDRKAGTAHEIADLVLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAGFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379
           P  + A +          V++ + PH   R  ++  + C
Sbjct: 341 PVEIAAVLKAARESTKGKVIAVVQPHRFTRLQSLFEEFC 379


>gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 20/258 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +   L + +    + +V +     +S +S+ I   + F A+ G   DGH++I  A++ G
Sbjct: 1   MSIQKLFKNVDYRVLTLVEEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +++   D       +++  V  + D LG ++        ++K  IIA+TG+ GKTTT 
Sbjct: 61  AKMIIAERDDYPYPKDITVVLVKNLRDNLGYISS-NFYNFPQNKLKIIAVTGTNGKTTTT 119

Query: 124 EMLTIALSSIKKTYACIGS---------YNNHIGVP-----LTLARMPVDVDFGIFELGM 169
            +L     SI K  A IG+         Y      P     + L +  VD +   F + +
Sbjct: 120 YIL----ESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEV 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +    ++    A+ T +   HL     +E+   AKA I   L+    + +N DD
Sbjct: 176 SSHALCQGRVKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPNARLIINKDD 235

Query: 230 SFFELLKAKSHALGIKTI 247
            +   L   S +  +K +
Sbjct: 236 KYCNRLLNVSDSFSLKEV 253


>gi|91762843|ref|ZP_01264808.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718645|gb|EAS85295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GK+TT ++L   L   KK    +G    +IG P+ L +        + E    
Sbjct: 107 ITITGTNGKSTTAKLLYDILKDQKKDVRLVG----NIGNPVLLEKKIKKDTLFVIEASSY 162

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      + L + +I++I  I+P HL     I +  SAK ++ +   K     LN  + 
Sbjct: 163 QLE----YSKLFKTNISLILNISPDHLERHKTINKYVSAKFKLIKNQSKNDIAILNTKNF 218

Query: 231 FFEL-LKAKSHALGI 244
           + +  LK K  A  I
Sbjct: 219 YIKRKLKQKKFAPSI 233


>gi|71082735|ref|YP_265454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71061848|gb|AAZ20851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GK+TT ++L   L   KK    +G    +IG P+ L +        + E    
Sbjct: 107 ITITGTNGKSTTAKLLYDILKDQKKDVRLVG----NIGNPVLLEKKIKKDTLFVIEASSY 162

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      + L + +I++I  I+P HL     I +  SAK ++ +   K     LN  + 
Sbjct: 163 QLE----YSKLFKTNISLILNISPDHLERHKTINKYVSAKFKLIKNQSKNDIAILNTKNF 218

Query: 231 FFEL-LKAKSHALGI 244
           + +  LK K  A  I
Sbjct: 219 YIKRKLKQKKFAPSI 233


>gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
 gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
          Length = 487

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 141/375 (37%), Gaps = 47/375 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLS 82
            V  +  DSR +   + F AIKG   DGH FI  A+  GA  +V  T    +V  +  + 
Sbjct: 23  MVGTLCFDSRKVKLDDVFVAIKGTLTDGHKFIEKAIDSGAVCIVCETMPEQLVNGVTYVE 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---------------T 127
           +        + A N     ++      ++ ITG+ GKTT   +L               T
Sbjct: 83  VDSGNKALAIMASNYYDNPSK---NLKLVGITGTNGKTTISSLLYQLFKKAGFKVGLIST 139

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186
           I +    K YA   +  + + +   L  M  + V+F   E+    + + R  T  +    
Sbjct: 140 IKIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFMEVSSHGIHQKR--TEGLVFEG 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL       E    K  +F+ L K      N DD    ++   + A     
Sbjct: 198 AIFTNLTHDHLDYHKTFAEYRDTKKSLFDKLPKNAFALTNVDDKNGLVMLQNTAARK--- 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLG 301
            +++     AD++ +          +E Q  G+ ++V         IG+  A N+L    
Sbjct: 255 -FTYALKSYADYRAQ---------ILENQFDGQLLKVDDDELWTKLIGHFNAYNVLAIYA 304

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  +    ++ LS     +GR + Y     +    ++D  Y   P ++K  +  + 
Sbjct: 305 TADLLGLEKLETLRLLSELDNVDGRFQYYISK--EKITAIVD--YAHTPDALKNVLETIG 360

Query: 362 QISPHGEGRRIAVLG 376
            +   G    I V+G
Sbjct: 361 TLRT-GNENVITVVG 374


>gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 495

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 159/393 (40%), Gaps = 51/393 (12%)

Query: 18  SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           ++G+ P G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +
Sbjct: 10  ALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTD 69

Query: 72  TDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARL---RSKATIIAITGSVGKTT----T 122
               A          G   VL       LA AA L   R  AT++A+TG+ GKT+    T
Sbjct: 70  AAGAALAREALA-GSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFT 128

Query: 123 KEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---S 170
           +++        + I  + ++  +A   ++      P+TL R+  +  + G+    M   S
Sbjct: 129 RQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLAEAAEAGVTHAAMEASS 186

Query: 171 HLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
           H  E R L   HL     A  T     HL      E   +AKA +F   L   GT  +N 
Sbjct: 187 HGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNL 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVH 285
           DD     + A + A   + I   G   +AD  LR   Q  + +  +++   QG+      
Sbjct: 244 DDPRGPEIAALARARAQRVI---GTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARL 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFTLID 343
             IG   A N+ +     S+     D   +  + F   +G RG+    A  Q G    +D
Sbjct: 301 PLIGGFQAWNVAVA---ASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVD 357

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++  A+  L    PH  GR + V G
Sbjct: 358 --YAHTPDALATALKAL---RPHVMGRIVVVFG 385


>gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 37/266 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  ML   +    K +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLAFEMLKEGKKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   + +P IA    +  AHL      EE   AKA IF+   +T    
Sbjct: 162 EVVVTELSSFQLMGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQL 276
           +N DD+    L A+S   G K ++S  K         +NA +   K ++ +E S  ++ L
Sbjct: 222 INADDADVMTLSAQSK--GQKVLFSTTKEIEDGAYIKENALY--YKGEKVAEVS--DIVL 275

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            GK           H  +N+L  + I  +L    +     L  F   + R +      N+
Sbjct: 276 PGK-----------HNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNR 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ 362
            F+   ++S   N  + + A+S  +Q
Sbjct: 325 KFY---NDSKATNMLATEKALSAFTQ 347


>gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 33/215 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R   +  ++ ITG+ GK+TT    T  +  I K          +IG+PL LA  P+  D 
Sbjct: 117 RHGRRCPVVGITGTNGKSTT----TALIHHILKEAGLPTLMGGNIGLPL-LAADPLP-DG 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G++ L +S   +I  LT  +   IAV+T I P HL    G E    AK  +F        
Sbjct: 171 GVYVLELSSY-QID-LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHY 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD   +++ AK  A  + T+++   + +A+ Q+         +W  +Q       
Sbjct: 229 AVIATDDIPSQVI-AKQSAAHLVTVHA--DNISAEDQI---------NWPNLQ------- 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 G H AQN ++ + +  IL    D   KAL
Sbjct: 270 ------GPHNAQNAVLAMAVAHILGISDDVISKAL 298


>gi|238898844|ref|YP_002924526.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259509775|sp|C4K735|MURC_HAMD5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229466604|gb|ACQ68378.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 493

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 173/440 (39%), Gaps = 93/440 (21%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           K A +VVV       N +++A+     IPV    ++L  L       R R     IAI G
Sbjct: 77  KNASVVVVSSAIPEDNPEILAA-HEARIPVIQRAEMLAEL------MRFRHG---IAIAG 126

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LG 173
           + GKTTT  M       +   YA  G               P  V+ G+ +    H  LG
Sbjct: 127 THGKTTTTAM-------VASIYAQAGLD-------------PTFVNGGLIKAAGKHAQLG 166

Query: 174 EIRFL-----------THLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221
             R+L            HL +P +A++T I   H+  + G  E +          L   G
Sbjct: 167 SSRYLIVEADESDASFIHL-QPLVAIVTNIEADHMDTYQGNFEHLKQTFINFLHNLPFYG 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
              L  DD     L  +      + I ++G S++AD ++  ++Q    S+  ++   K  
Sbjct: 226 RAILCIDDQVIRTLLPRI----ARHITTYGFSEDADIKITGYEQKEFTSYFMLERVHKPI 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-------A 333
           +++  +  G H A N    + + +    + +  ++ALS F   +G G+R+ C        
Sbjct: 282 LKIQLNAPGRHNALNAAAAVAVATEEGVEDEHILQALSFF---QGTGRRFDCLGIFPLQP 338

Query: 334 LN--QGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEM 381
           +N  QG   LID+ Y  +P  + A I           ++    PH   R   +  D   +
Sbjct: 339 VNGQQGEVMLIDD-YGHHPTEVAATIKAARVGWPTKRLVMIFQPHRYSRTRDLYDDFVNV 397

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----VHYSETMDGLFLF 436
             LSQ   +D+  +L +Y+     +      AL D++    H     V   E +  L   
Sbjct: 398 --LSQ---VDILLMLEIYSAGESPIPDISSCALCDSIRDFSHRMPILVTDHEKLPSL--- 449

Query: 437 IQSSLVDGDVVVVKSSNSCG 456
           +   L + D+V+V+ + + G
Sbjct: 450 LAKQLKENDMVLVQGAGNIG 469


>gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
 gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
          Length = 451

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           +AITG+ GKTTT  +L   L  + K  + +      +G  +  A   + V+ G  +L + 
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIE 158

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 KYNVQN 281


>gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 145/359 (40%), Gaps = 35/359 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T +AI+G+ GKTTT  M++  L +        G  +  I V   L  +  ++  G
Sbjct: 115 MRNYDTPVAISGTHGKTTTTSMVSHILLA--------GDCDPTISVGGILPAIGGNIRVG 166

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  ++   E    FL+    P I++I  +   HL  F  I++I  +     E L   G
Sbjct: 167 NSETFVTEACEYTNSFLSFF--PKISIILNMDADHLDFFKDIDDIRHSFRRFAELLPADG 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
           T+ +N D   +E +           + ++G   +AD+Q     + +    S+  ++   K
Sbjct: 225 TLIINADTPKYEDIIRDLPC----NVITYGLEHDADYQAADITYDKYGHASFSVLRNGVK 280

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  + +  +L    +  IK L  F    G  +R++        
Sbjct: 281 VGSYYLKVPGIHNVSNALAAIALGHLLGLSEEVIIKGLGSF---TGTDRRFQYKGEVAGV 337

Query: 340 TLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           T++D+ Y  +P  ++A +          +     PH   R  A+L +  +   LS + H+
Sbjct: 338 TIVDD-YAHHPTEIEATLHAAHNYPHKKLWCVFQPHTYTRTKALLPEFAKA--LSLADHV 394

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +A++ +      + +S   +      L       Y  T D +  ++ S+  +GD+++ 
Sbjct: 395 VVADIYAARETDTLGISSEDLQKRIQEL--GTPCEYFPTFDEIENYLLSNCQEGDLLIT 451


>gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
          Length = 480

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 38/278 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  I ITG+ GKT+T EM +  L++   T   +G    +IG  ++ A +    D    EL
Sbjct: 104 AQWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG----NIGKAVSHAAVDPANDVLCVEL 159

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +    A IT IA  HL    GI+  A+ KA++F  ++K   +  N 
Sbjct: 160 SSFQL----HFTDSLALDCAAITNIADDHLDWHGGIDNYAADKAKVFHRVKK--ALVYNA 213

Query: 228 DDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------- 278
           DD     L  A   A G + +  F  S+  D Q+       +  W+ V + G        
Sbjct: 214 DDERVTRLAFAAETAEGCRKV-GFTLSEPQDGQI-----GVKDGWI-VDMSGIAGGKPGT 266

Query: 279 -----KSMEVVH----HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                +  E  H     G  Y H+  + L  L +V  L AD + AI +L  F P   R +
Sbjct: 267 PEQVAEVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLKRFTPGGHRIQ 326

Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQIS 364
               A  Q  G    +D+S   N  + KA+++  +  S
Sbjct: 327 TVATATTQDGGSIRFVDDSKATNAHAAKASLNSFADKS 364


>gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 482

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%)

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P + +IT I   H+S + +  E +  A  E    L   G   +  DD     + +  +  
Sbjct: 187 PTVEIITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVYGYAVICIDDPAIRSVLSNVN-- 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLG 301
             + I ++G SK+AD  +  + Q  E+S   V ++ K  +E++ +  GYH   N   ++G
Sbjct: 245 --RKIITYGFSKDADLCILNYHQYREKSKFTVLIKNKKKLEIILNIPGYHNVLNATASIG 302

Query: 302 IVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTL-----------IDESYNAN 349
            VSI     D  I +A+  F   +G  +R+    N GF++L           I + Y  +
Sbjct: 303 -VSIEEGIPDLVILRAMLNF---QGTNRRFE---NLGFYSLKQINGRVGKVMIVDDYGHH 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSF-----HIDLAEVLSLY 399
           P  + A I+ +    P  + R I V          EL  SF      +D+  +L++Y
Sbjct: 356 PTELHATIATVRSGWP--DKRLIMVFQPHRFTRTCELYDSFIHVLSTVDVLLILNVY 410


>gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 33/215 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R   +  ++ ITG+ GK+TT    T  +  I K          +IG+PL LA  P+  D 
Sbjct: 117 RHGRRCPVVGITGTNGKSTT----TALIHHILKEAGLPTLMGGNIGLPL-LAADPLP-DG 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G++ L +S   +I  LT  +   IAV+T I P HL    G E    AK  +F        
Sbjct: 171 GVYVLELSSY-QID-LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHY 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD   +++ AK  A  + T+++   S              + +W  +Q       
Sbjct: 229 AVIATDDIPSQVI-AKQSAAHLVTVHADNISAE-----------DQVNWPNLQ------- 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 G H AQN ++ + +  IL    D   KAL
Sbjct: 270 ------GPHNAQNAVLAMAVAHILGISDDVISKAL 298


>gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis YPIII]
 gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis YPIII]
          Length = 438

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 37/262 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A ++AITGS GK+T    +T  +  + K          +IGVP LTL +   D    +
Sbjct: 103 NQAPVVAITGSNGKST----VTTLVGEMAKAAGWSVGVGGNIGVPALTLLKQ--DNQLTV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +     
Sbjct: 157 LELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VC 209

Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQG 278
            +N DD+    +  A S  +      SFG     D+ L K +    + W+ V+    L  
Sbjct: 210 VVNADDALTMPVRGADSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNT 259

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + M++     G H   N L  L +   +     +++KAL+ F    G   R++  L +  
Sbjct: 260 REMKLS----GRHNYTNALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHG 312

Query: 339 FTLIDESYNANPASMKAAISVL 360
              I++S   N  S +AA+  L
Sbjct: 313 VRWINDSKATNVGSTEAALDGL 334


>gi|189423738|ref|YP_001950915.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter lovleyi SZ]
 gi|229620044|sp|B3E3Y1|MURC_GEOLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189419997|gb|ACD94395.1| UDP-N-acetylmuramate/alanine ligase [Geobacter lovleyi SZ]
          Length = 456

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 105/268 (39%), Gaps = 25/268 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  M+   L+   I  T   IG   N +G    L +       G F + 
Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHAGIDPTI-VIGGKLNTLGSNAKLGQ-------GKFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FLT  + P IAV+T I   HL  ++ G+E+I          +   G   L  
Sbjct: 160 EADESDGSFLT--LSPTIAVVTNIDADHLDYYTGGLEQIKDTFVSFINKVPFYGLAVLCQ 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D     +  +      K   ++G S  AD +    K    Q+      +G  + E+  +
Sbjct: 218 EDRNINEIIPRIK----KRFMTYGLSSQADLRATHVKLDGFQTTFTAHYKGYRLGEISFN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +   L    D   +  + F    G G+R+     +    ++D+ Y
Sbjct: 274 MPGAHNVLNALACTAVALELDVPFDKIQEGFAQFG---GVGRRFTVKGEKNGIMVVDD-Y 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAV 374
             +PA ++A +       P    RR+ V
Sbjct: 330 GHHPAEIRATLGAARNGWPE---RRLVV 354


>gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           cibaria KACC 11862]
          Length = 447

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGM 169
           IA+TGS GKTTT EM+   L +   +   I    N IG P++ +A    D D  + EL  
Sbjct: 106 IALTGSNGKTTTTEMIAAVLRTQATSDHQIVVAGN-IGTPVSEVAPSLRDTDTLVTELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L          +P+IA+IT I  +HL      E   +AK  I +       + +NYD 
Sbjct: 165 FQL----MGMPEAKPNIAIITNIFASHLDYHGSRENYVAAKMGITKNQTADDYLVINYDR 220

Query: 230 SFFELLKAKSHA 241
           + +  L  ++ A
Sbjct: 221 AEWRELAQQTAA 232


>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
 gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA+I+A+TG+ GKTTT ++L + L +  K +A  G    ++GV L+     +D +  I 
Sbjct: 102 TKASILAVTGTNGKTTTTKLLGLMLKNSGKKFAVAG----NLGVSLSDKADLID-EKSII 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +S   ++ F+ +  +P  A I  I P HL     +E    AKA IFE +     I L
Sbjct: 157 AAEVSSF-QLEFIKNF-KPKAAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILL 214

Query: 226 NYDDSF 231
           N DD +
Sbjct: 215 NADDKY 220


>gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 447

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IF 165
           A II ITGS GKTT   M+   L +   + +  G+      V  + A       F   + 
Sbjct: 102 ANIIGITGSNGKTTVTNMVYHILKNAGLSVSMAGN------VGFSFAEQVARQSFHNYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  +       RPHIA++T+I P HL  +    +E   AK +I +   K   + 
Sbjct: 156 ELSSFQLDGVEDF----RPHIAILTSITPDHLDRYHDNFQEYIQAKFKITKNQTKDDFLI 211

Query: 225 LNYDD 229
            N DD
Sbjct: 212 YNKDD 216


>gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
 gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 181/453 (39%), Gaps = 86/453 (18%)

Query: 56  FILHAVQK--GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           FI H  +   GA +VV+       N ++VA+     IPV     +L  L       R R 
Sbjct: 67  FIGHKAENITGASVVVISSAIRDDNPEVVAA-KEARIPVIQRAQMLAEL------MRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  A + +  T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGRSRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P I+++T I P H+  + G  +E+          L 
Sbjct: 177 SDASFLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQ 277
             G   L  DD+    L  +   +G + + ++G S+NAD+++  ++Q   Q  +  +   
Sbjct: 222 FYGLAVLCADDADLMSLVPQ---VG-RQVITYGFSENADYRIEDYQQTGFQGHYTVICPS 277

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ- 336
           G+ ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+   L Q 
Sbjct: 278 GERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADF---QGAGRRFD-QLGQF 333

Query: 337 ----GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMG 382
               G   L+D+ Y  +P  +   I    Q            PH   R   +  D  ++ 
Sbjct: 334 IRPNGKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV- 391

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFL 435
            LSQ   +D   +L +Y      + G    A   AL RSI        V  S+T   L  
Sbjct: 392 -LSQ---VDALIMLDVYPAGEAPIVG----ADSKALCRSIRNLGKVDPVLVSDTAQ-LGE 442

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +   + DGD+++ + + S    +L   L+E +
Sbjct: 443 VLDHLIQDGDLILAQGAGSVS--KLSRQLVERW 473


>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
 gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 19/232 (8%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG    +IGV +      
Sbjct: 88  LELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIG----NIGVGMLWEIYN 143

Query: 158 VDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            D D + + E     L      T   +P  + I  I P H+     ++   +AK  + + 
Sbjct: 144 SDKDTYFVIECSSFQLES----TKHFKPQYSCIINITPDHIDWHGSMKNYVNAKKNVLKN 199

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEV 274
            ++     LN DD ++E  K  + A     IY    SKN +    ++        S+ + 
Sbjct: 200 QDENCYTVLNADDEYYEECKKFTKA----NIYDISTSKNIERGSFIKDNSIYFSDSYCDK 255

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +  K +++    IGYH  QN+L  + +  ++  + D+  + L  F   E R
Sbjct: 256 IIDLKDVKL----IGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHR 303


>gi|261493191|ref|ZP_05989720.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496953|ref|ZP_05993320.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307389|gb|EEY08725.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311154|gb|EEY12328.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 475

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 182/434 (41%), Gaps = 72/434 (16%)

Query: 56  FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV+T +      + +     IPV    ++L  +       R R  
Sbjct: 67  FIGHQAENIAGASVVVVSTAIDETNPEIIAAREARIPVIRRAEMLAEI------MRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IAI G+ GKTTT  M+++  +  K   T+   G       N H+G    L       
Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAGKNAHLGASRYL------- 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
                 +  +   +  FL HL +P ++V+T I P H+  + G  E++          L  
Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278
            G   +  DD   E +   +  +G + + ++G S+NAD+++  ++Q   ++ +  V   G
Sbjct: 223 YGLAVMCADD---ETVMEIAPRVG-RQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSG 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCAL 334
           + ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+        
Sbjct: 279 ERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADF---QGAGRRFDQLGSFIR 335

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLA 393
             G   L+D+ Y  +P  +   I    Q +  G EG+R+ ++            F  +  
Sbjct: 336 PNGKIMLVDD-YGHHPTEVDVTI----QAARSGWEGKRVVMIFQPHRYSRTRDLFD-EFV 389

Query: 394 EVLSLYN---ISHVWLSGFHVLALKD--ALPRSIH-------VHYSETMDGLFLFIQSSL 441
           +VLS  +   +  V+ +G   +   D  AL RSI        +  S+T D L   +   +
Sbjct: 390 QVLSKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDT-DQLGEVLDQII 448

Query: 442 VDGDVVVVKSSNSC 455
            DGD+++ + + S 
Sbjct: 449 QDGDLILAQGAGSV 462


>gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           novicida U112]
 gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
 gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112]
 gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
          Length = 451

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           +AITG+ GKTTT  +L   L  + K  + +      +G  +  A   + V+ G  +L + 
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIE 158

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 KYNVQN 281


>gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis KIM 10]
 gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Antiqua]
 gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Nepal516]
 gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Pestoides F]
 gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Angola]
 gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           FV-1]
 gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis CO92]
 gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM
           10]
 gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Antiqua]
 gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CO92]
 gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Pestoides F]
 gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Angola]
 gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D106004]
 gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D182038]
 gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 438

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 149/366 (40%), Gaps = 56/366 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG----- 66
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++  G     
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFIARGVTPRVMDTRINPP---GLDQLPESVEQHVGDLNQE 61

Query: 67  ------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                 L+VV+  M  +  +LS       +++G +          ++A ++AITGS GK+
Sbjct: 62  WLLDADLIVVSPGMALAHPALSEAAEAGVEIIGDIELFC----RENQAPVVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T   + T+     K     +G   N IGVP LTL +   D    + EL    L      T
Sbjct: 118 T---VTTLVGEMAKAAGWSVGGGGN-IGVPALTLLKQ--DNQLTVLELSSFQL----ETT 167

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           H +R   A I  +   H   +  G+++  +AK  ++E  +      +N DD+    ++  
Sbjct: 168 HSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VCVVNADDALTMPVRGA 224

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
                     SFG     D+ L K +    + W+ V+    L  + M++     G H   
Sbjct: 225 D-----SRCISFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLS----GRHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +++KAL+ F    G   R++  L +     I++S   N  S +
Sbjct: 272 NALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHGVRWINDSKATNVGSTE 328

Query: 355 AAISVL 360
           AA+  L
Sbjct: 329 AALDGL 334


>gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 463

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 30/257 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVF 86
           D++  A  EA  A+    + GH      +   A  VVV++ +      +A    L IPV 
Sbjct: 40  DAKESATAEALRALGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELARAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYN 144
              D L AL        LR     IA+ G+ GKTTT  ML ++LS+  +  +YA  G  +
Sbjct: 98  HRSDALAALMT-----GLRP----IAVAGTHGKTTTTSMLAVSLSALGLSPSYAIGGDLD 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                P + A        G  E+ ++   E     H   P +A++  +   H +N++ ++
Sbjct: 149 ----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMD 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EI  +     + +   GT+ ++ D      L  +     ++ + ++G+S++A  ++    
Sbjct: 199 EIYESFETFVDRVTPGGTLVISADHEGARELTRRVAGRDVRVV-TYGESQDAGVRVLSVV 257

Query: 265 QCSEQSWMEVQLQGKSM 281
               +S + V L G+ +
Sbjct: 258 PQGLKSEVTVVLDGEEL 274


>gi|329117290|ref|ZP_08246007.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis
           NCFD 2020]
 gi|326907695|gb|EGE54609.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis
           NCFD 2020]
          Length = 443

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 38/282 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T   + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE  
Sbjct: 104 TSFGVAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P  ++IT I   H   F+GIE++ +A  +  + ++K   +F+  +
Sbjct: 153 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGIEDVFAAFNDYAKQVKK--ALFVYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           D   EL K  ++A     IY +G S   +F     ++ +  S  +V+  G+ +   H   
Sbjct: 208 DP--ELKKISANA----PIYYYGFSDEDNFTAYDIRRTTNGSDFKVKHDGQEIGDFHVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    +  + I   D+D   K +  F+     G + R        T+I + + 
Sbjct: 262 YGKHNILNATAVIANLFIAGFDMDLVAKHMVSFN-----GVKRRFTEKIINDTIIIDDFA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
            +P  + A I    Q            PH   R IA+L +  
Sbjct: 317 HHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDEFA 358


>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
          Length = 437

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 54/266 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GK+T  ++  +   +   T    G    +IGVP  L  +  D D  + EL  
Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALELLEQDADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +  +AK  IF+  E      +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDHAE---LAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                   +++      + +FG               S++    +++ G    ++ HG  
Sbjct: 218 Q-------ETYPEVEMPVVTFG---------------SDEQAYGLEVDGSRTWLLDHGQR 255

Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335
                    +G H   N L+ L ++     D   A+ AL     K   G  +RC   A N
Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310

Query: 336 QGFFTLIDESYNANPASMKAAISVLS 361
           +G    +++S   N AS  AA+S L 
Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGLE 335


>gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
 gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
          Length = 513

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 27/250 (10%)

Query: 4   LWTFHDLLQAI---QGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           L    D+L++I    G S G    G V  G++ DSR++ P + + A+ G H   H     
Sbjct: 16  LTALPDVLRSITVAPGPSGGAALAGVVLTGVTHDSRAVLPGDLYAALPGAHV--HGADFA 73

Query: 60  AVQKGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           A    AG V V TD V +    G L++PV   DD    L   A  +     S  T++ +T
Sbjct: 74  AGAVAAGAVAVLTDPVGAAALSGRLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVT 133

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMSH 171
           G+ GKTTT  +L   L +   T   +G+    +    VP ++   P   D       M  
Sbjct: 134 GTNGKTTTAFLLDAGLRAAGYTTGLLGTVQTRVAGTVVP-SVRTTPESGDLQALLATMVE 192

Query: 172 LG----EIRFLTHLVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            G     +   +H +  H         A  T ++  HL     +E+  +AKA +FE    
Sbjct: 193 RGVGAASMEVSSHALAQHRVDALRFAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEPARS 252

Query: 220 TGTIFLNYDD 229
              +    DD
Sbjct: 253 AAAVVCVDDD 262


>gi|225378135|ref|ZP_03755356.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
 gi|225210016|gb|EEG92370.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 41/355 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKTTT  M++  L + KK        +  I V   L  +  ++  G  ++ +S
Sbjct: 114 IAVSGTHGKTTTTSMISQILLAAKK--------DPTITVGGILKAIDGNLRVGKSDVFIS 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-D 229
              E        RP  ++I  I   HL  F  I +I ++     +  ++ G I +N + +
Sbjct: 166 EACEYTNSFLNFRPKYSIILNIEAEHLDFFKDIHDIRNSFHLFAKNTKENGAIIINGEIE 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWMEVQLQG-KSMEVV 284
           ++ E+++  +       + ++G S   DF         K C+  + M     G K M+V 
Sbjct: 226 NYQEIVEGLA-----PQVITYGMSDACDFYPADITFNEKACANFTAM---YHGEKVMDVA 277

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H   N L  + +   L    +  +  LS F   + R +   C       T+ID+
Sbjct: 278 LNVPGLHNVSNALAAIALALDLKISKEDILAGLSAFGGADRRFQYKGCVDG---VTVIDD 334

Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  ++A ++   +           PH   R  A L D  E+  LS +  + LA++
Sbjct: 335 -YAHHPTEIRATLTAAKKYPHKRLVLVFQPHTYSRTKAFLNDFAEV--LSMADVVVLADI 391

Query: 396 LSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    +   +S   + A LK+   +   VHY  +   +  F+  + ++GD+++ 
Sbjct: 392 YAAREKNTFGISSRDIEAKLKE---KGTDVHYFPSFTEIENFLLKNCINGDLLIT 443


>gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens
           QYMF]
          Length = 460

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 122/324 (37%), Gaps = 59/324 (18%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L IP+    ++LG +        ++     IA+ GS GKTTT  ++++ +         
Sbjct: 92  ELGIPLADRAEMLGQI--------MKKYEKAIAVAGSHGKTTTTSLISLLME-------- 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVIT 190
              Y+N    P  L    +D   G  ++G S      F+T             P I +I 
Sbjct: 136 ---YSN--LDPTILVGGELDEIGGNIKIGQSQ----HFITEACEYVESFLKFYPFIGIIL 186

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHAL--GIKT 246
            I   HL  F  IE I SA  +  + + K G +  +YDD+    +      H +  GIKT
Sbjct: 187 NIDEDHLDYFKDIEHIKSAFKKFAQRIPKEGFLIASYDDAHVREISRDLDCHVITYGIKT 246

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
              F  + N +F              +V  +GK++      I G H   N L  +    +
Sbjct: 247 KSQF-MAHNIEFSFEGLPS------FDVSFEGKTIGSFSLNIPGLHNVYNSLAAIATTYV 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--- 362
           L  D     K ++ F   +G  +R+          +ID+ Y  +P  ++A +    +   
Sbjct: 300 LGVDPVAISKHITRF---KGIHRRFDLLGEVKGAKVIDD-YAHHPVEIRATLEAAKKYPH 355

Query: 363 ------ISPHGEGRRIAVLGDMCE 380
                   PH   R  A+L D  +
Sbjct: 356 KKIWCVFQPHTYSRTQALLKDFAK 379


>gi|242238101|ref|YP_002986282.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya dadantii Ech703]
 gi|242130158|gb|ACS84460.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech703]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 147/386 (38%), Gaps = 78/386 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ++T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAIVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGHAVMCLDDPVIRELLPR---VG-RHITTYGFSDDADVRVADYRQVGAQGLFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---- 331
           QGK  + V  +  G H A N    + + +    + D  ++AL  F   +G G+R+     
Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIEDDAILRALERF---QGTGRRFDFLGE 333

Query: 332 -----CALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLG 376
                     G   L+D+ Y  +P  + A I                 PH   R   +  
Sbjct: 334 FPLEPVNGKSGAVMLVDD-YGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYD 392

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS------ETM 430
           D   +  LSQ   +D+  +L +Y      + G    A   +L R+I             +
Sbjct: 393 DFAHV--LSQ---VDVLLMLDVYPAGEAPIPG----ADSRSLCRTIRGRGKIDPIMVPDV 443

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + L   +  +L +GD+V+ + + S G
Sbjct: 444 ENLPELLAQALQNGDLVLAQGAGSVG 469


>gi|224532317|ref|ZP_03672949.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
 gi|224511782|gb|EEF82188.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
          Length = 468

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 25/184 (13%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139
           L+IP+    + LG L++         K   I I GS GKTTT   L I  + +       
Sbjct: 96  LNIPILSYPEALGELSR---------KYYSIGIAGSHGKTTTTAFLGIVFNKLGLNPNVI 146

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197
           +GS     G    +A        GI  + +    E +   H +   P++ ++T +   H+
Sbjct: 147 VGSSVKDFGGNSAIA--------GISNIFIVETCEYK--KHFLHFSPNMLILTNVDYEHV 196

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNA 256
             F   E +  A  +    L+K G + +N DD+   LLK K   +     I+SFG    +
Sbjct: 197 DFFKNYESLEDAFLQYINNLKKNGILIINSDDN--NLLKIKRQISRKDINIFSFGSRDLS 254

Query: 257 DFQL 260
           +FQ+
Sbjct: 255 NFQI 258


>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
 gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 41/264 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + K          +IG+P L L   P      +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGDMAKAAGWQVGVGGNIGLPALMLLEQP--AQLYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++   E     
Sbjct: 157 LELSSFQLET----TASLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVY---ENAAVC 209

Query: 224 FLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----L 276
            +N DD+       L A+  + GI            D+ L      S +SW+ V+    +
Sbjct: 210 VVNADDAMTFPVRGLDARCVSFGINA---------GDYHL---ATESGESWLNVKGDNLM 257

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +   M +V    G H   N L  L +   +   + +++KAL+ F    G   R++ AL++
Sbjct: 258 KTSDMTLV----GQHNQTNALAALALAEAVGLPLASSLKALTTF---SGLAHRFQIALDR 310

Query: 337 GFFTLIDESYNANPASMKAAISVL 360
                I++S   N  S +AA++ L
Sbjct: 311 NGVRWINDSKATNVGSTEAALNGL 334


>gi|293366318|ref|ZP_06612998.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319556|gb|EFE59922.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P        + D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLP--------ESDYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    +I
Sbjct: 255 FLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVS-NQ----VI 309

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            + Y  +P  + A I           V++   PH   R  A L +  E   LS++  + L
Sbjct: 310 VDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
 gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
          Length = 456

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 32/211 (15%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L  I++     RP  A++  I P HL+    +E   +AK  IFE    T 
Sbjct: 159 FLVAELSSYQLETIKYF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD 214

Query: 222 TIFLNYDDSFFELL--KAKSHALGIK--------TIYSFGKSKNADFQLRKWKQCSEQSW 271
            + LN DD     +  +A SH L I           Y+ G+   A   + K+    E   
Sbjct: 215 YLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAKFVIADEDI- 273

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                         H  G H  +N+L  + +   L   V+T  + +S FH  E R +R +
Sbjct: 274 --------------HIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVK 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 F+   ++S   N  S+  A+    Q
Sbjct: 320 TIDGITFY---NDSKATNVDSVVKALESFDQ 347


>gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
 gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDF 162
           L   A  + +TG+ GKTTT +MLT  L +  K     G    ++G P+  A M P   D 
Sbjct: 135 LEGAAPWLTVTGTNGKTTTVQMLTSILRAAGKRAISAG----NVGTPILEAIMDPEPFDA 190

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      +  +RP  +V   +AP H+      E+  +AK +++   +    
Sbjct: 191 IAVELSSFQL----HWSDSIRPQASVCLNVAPDHVDWHGSYEDYLAAKGKVYNNTQV--A 244

Query: 223 IFLNYDDSFFELL 235
              N DD   E L
Sbjct: 245 CIYNVDDPQTERL 257


>gi|307127726|ref|YP_003879757.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
 gi|306484788|gb|ADM91657.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
          Length = 444

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE   S
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGD---------GTGRGSANAKYFVFE---S 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E  F+ +   P  ++IT I   H   F+ +E+I +A  +  + + K   +F+  +D+
Sbjct: 154 DEYERHFMPY--HPEYSIITNIDFDHPDYFTSLEDIFNAFNDYAKQITK--GLFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
             EL K  S A     IY +G + +  DF      +    S   V  +G+++   H    
Sbjct: 210 --ELRKITSDA----PIYYYGFEVEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F    G  +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTF---AGVKRRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +P  + A +    Q            PH   R IA+L D      L+Q+  + LA++
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHA--LNQADAVYLAQI 373


>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
          Length = 448

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 31/260 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   + 
Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q  GK + V 
Sbjct: 214 VNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQF-GKLLPVG 266

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFT 340
              I G H   N L  L +   +    D  + AL  F      G  +RC      QG  +
Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFS-----GLAHRCQWVRERQG-VS 320

Query: 341 LIDESYNANPASMKAAISVL 360
             D+S   N  +  AAI  L
Sbjct: 321 YYDDSKATNVGAALAAIEGL 340


>gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GKTT   ML   L   KK          +IG PL+   +  + +     L +S+
Sbjct: 107 AITGTNGKTTITTMLYEMLKYNKKAIVA-----GNIGWPLSELALKYEAEEKDVALELSN 161

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             ++  + H   P ++V+  +AP HL     +E    +K  I++   K      N DD+
Sbjct: 162 F-QLLGIEHFA-PSVSVVCNLAPDHLDYMPSVESYYESKMRIYKNCTKDDWFLRNVDDA 218


>gi|295098592|emb|CBK87682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 42/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T   ++     +  K     G    +IG+P   A M +D    +F
Sbjct: 103 AQAPIVAITGSNGKSTVTTLVGEMAKAAGKNVGVGG----NIGLP---ALMLLDKGCELF 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L     A I  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 156 VLELSSF-QLETTSSL-HAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+ + K + V 
Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGINM-GDYHLNRQQG---ETWLRVKGE-KVLNVK 260

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H   N L  L +   +     +++KAL+ F    G   R++ AL       I+
Sbjct: 261 EMMLSGQHNYTNALAALALADAVGLPRSSSLKALTTF---TGLAHRFQLALEHNGVRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S +AA++ L     H +G    +LG              D + +    N  +
Sbjct: 318 DSKATNVGSTEAALNGL-----HVDGTLYLLLG--------GDGKSADFSSLKQYLNGDN 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           V L  F     + A  R      +ETM+     I   +  GD+V++  S +C
Sbjct: 365 VRLYCFGRDGSELAALRPEVAEQTETMEQAMRLIAPRVKPGDMVLL--SPAC 414


>gi|194334384|ref|YP_002016244.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
 gi|194312202|gb|ACF46597.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 15/193 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IA+I  I   H   F+ IE+I  +       +   G +  N  D+    + +K+   
Sbjct: 189 RPDIAIINNIEFDHADIFNSIEDIKRSFRHFVNLVPSEGLLLCNGHDAVALDIASKAFC- 247

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMT 299
               +  FG  K+ D+  R  +   E++  E+   Q+   ++E+     G H   N L  
Sbjct: 248 ---RVERFGLDKSCDWSARNIEANGERTAFELLHNQIPVGNLEIPL--FGTHNILNTLAA 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G  S   AD+   + A ++ H K  + +        G  TLID+ +  +P ++KA +  
Sbjct: 303 IGSAS--QADIQLPVIAEALRHFKGPKRRMEVIGDFPGNITLIDD-FAHHPTAIKATLDA 359

Query: 360 LSQISPHGEGRRI 372
           L Q  P    RRI
Sbjct: 360 LRQRFP---SRRI 369


>gi|313206533|ref|YP_004045710.1| udp-n-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|312445849|gb|ADQ82204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|315023526|gb|EFT36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer RA-YM]
 gi|325336018|gb|ADZ12292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Riemerella
           anatipestifer RA-GD]
          Length = 441

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A I+AITGS GKTTT  ++   L          G    +IG            D+ + 
Sbjct: 99  TNAKIVAITGSNGKTTTTSLIYHILKDNGMNVGLGG----NIGKSFAKQVADESFDYYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +I+      RP+I+++  ++  HL  ++   EE A AK  I E  E      
Sbjct: 155 EISSFQLDDIQNF----RPYISLLLNLSQDHLDQYNYNYEEYALAKFRITENQEYDNFFI 210

Query: 225 LNYDDSFFEL------LKAKSHALGIKTIYSFG 251
            N DD   +       LK K     IK   S G
Sbjct: 211 YNKDDEMSQKILQELDLKVKKVPFSIKETLSEG 243


>gi|290961154|ref|YP_003492336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptomyces
           scabiei 87.22]
 gi|260650680|emb|CBG73796.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Streptomyces scabiei 87.22]
          Length = 473

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 100 VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---TLA 154
           +A RLR    A  +A+TG+ GKTTT +ML   L++     A +G    +IGV L    L 
Sbjct: 101 LAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVG----NIGVSLLDVVLG 156

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             P DV     EL    L         +R H A +  +AP HL     +E  A+ K  ++
Sbjct: 157 DEPYDV--LAVELSSYQL----HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVY 210

Query: 215 EG 216
           EG
Sbjct: 211 EG 212


>gi|237729386|ref|ZP_04559867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
 gi|226909115|gb|EEH95033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 153/357 (42%), Gaps = 52/357 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D +  ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDDERELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +     G H   N L  L +         +++KAL+ F    G   R++  LN     
Sbjct: 262 MTLT----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLNHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +  + L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364

Query: 401 ISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           I        G  + AL+  +       ++ETM+     +   +  GD+V++  S +C
Sbjct: 365 IRLYCFGRDGAQLAALRPEV-----AEHTETMEQAMRLLAPRVKPGDMVLL--SPAC 414


>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 490

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 143/365 (39%), Gaps = 45/365 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR + P   F  I G   DGH F   AV+KGA  ++    +   +  + +   
Sbjct: 26  ITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGAVAILAEKPVDVEVPVVRVK-- 83

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                  A+  LA A   +   K  +I +TG+ GKTT   ++     S  K    IG+  
Sbjct: 84  ---STKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIE 140

Query: 145 NHIG---------VP--LTLAR-----MPVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG          P  LTL +     +  +V+  + E+  SH   LG +    H     
Sbjct: 141 IRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMMEVS-SHALDLGRV----HGCDFD 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           +AV + +   HL     +E+   AK  +F  L       +     LN DD+  E     +
Sbjct: 196 VAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKFAVLNADDAATEEYIKNT 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    T+ ++G  + +D +    +  +  +  ++    +++ V    IG     N+L  
Sbjct: 256 AA----TVITYGIDRESDIRATNIQITNSGTTFDLTTPTETVRVGMKLIGKFSVYNVLAA 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +    +   ++ + V    EG   R+     +  FT+I + Y   P S++  +  
Sbjct: 312 TASCLVSGIPLSVIVEEIKVL---EGVSGRFEVVDAEQDFTVIVD-YAHTPDSLENVLKT 367

Query: 360 LSQIS 364
           + + +
Sbjct: 368 VKEFA 372


>gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
 gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYAC---IGSYNNHIGVPLTL 153
           A+AA + S + ++A+ G+ GK+TT  M+ + L  +    ++A    I  Y ++       
Sbjct: 112 ALAAAMGS-SQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSN------- 163

Query: 154 ARMPVDVDFGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           AR+    +   F  E   S    +R+     +P IAV+T + P HL  +   E +  A  
Sbjct: 164 ARLGATGEGSWFVAEADESDGSFVRY-----QPAIAVVTNVEPDHLDFYETPERVYEAFN 218

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
                +   G +   +DD     L  ++   GI+ + ++G+S  AD ++ +
Sbjct: 219 RFVASMAPGGVLVTCWDDEGARALAERARDAGIEVV-TYGQSTEADLRVSR 268


>gi|260596513|ref|YP_003209084.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           turicensis z3032]
 gi|260215690|emb|CBA28025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cronobacter
           turicensis z3032]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 186/457 (40%), Gaps = 63/457 (13%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVTPRVMDTRISPP---GLDKLPEEVERHLGSLNET 61

Query: 69  -VVNTDM-VASIG-SLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++N D+ VAS G +L+ P   V    G   +  + +  R  ++A I+AITGS GK+T  
Sbjct: 62  WLMNADLIVASPGIALAHPALSVAAEAGVEIVGDIELFCR-EAQAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +T  +  + K          +IG+P  L  +    +  + EL    L      T  ++
Sbjct: 119 --VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLEEGRELYVLELSSFQLET----TFSLK 171

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              A I  +   H+  +  G+++  +AK  I+   E      +N DD+    ++      
Sbjct: 172 AAAATILNVTEDHMDRYPLGLQQYRAAKLRIY---ENATVCVVNADDALTMPVRGAD--- 225

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLM 298
             +   SFG     D+ L + +    + W+ V+    L  K M++V    G H   N L 
Sbjct: 226 --ERCVSFGIDV-GDYHLNRQQG---EIWLRVRGEKVLNVKEMKLV----GQHNYTNALA 275

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +         +++KAL+ F    G   R++ A        I++S   N  S +AA++
Sbjct: 276 ALALADAAGLPRASSLKALTTFG---GLAHRFQLAYEHNGVRWINDSKATNVGSTEAALN 332

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L     H +G    +LG   +  + S   H    + + LY        G  + AL+  +
Sbjct: 333 GL-----HLDGTLHLLLGGDGKSADFSPLAHYLTGDRVRLYCFGR---DGDALAALRPEV 384

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +     ETM+     I   +  GD+V++  S +C
Sbjct: 385 AERM-----ETMEEAMKVIAGRVTPGDMVLL--SPAC 414


>gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
 gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
          Length = 480

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 138/367 (37%), Gaps = 30/367 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR + P   F A+ G   DG  +I  A+  GA  ++  T   A     ++PV 
Sbjct: 17  ITGLTADSRQVKPGFLFAALPGETTDGRRYIDQAIAAGAAAILAPTGTTA-----TVPVL 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-N 145
             D+   AL  LA          I+ +TG+ GKT+    +    S+   +   +G+   +
Sbjct: 72  ADDNPRQALAMLAARFHAGQPKCIVGVTGTNGKTSVARFVAQLWSAFGHSAGTVGTLGAS 131

Query: 146 HIGVPLTLARMPVD------VDFGIFELGMSHL-------GEIRFLTHLVRPHIAVITTI 192
             G    L     D      V   +  +G +HL       G  +     VR   A  T I
Sbjct: 132 APGYDYALRHTTPDPVELHQVISTMAAMGTTHLAMEVSSHGLAQHRADGVRFSHAGFTNI 191

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL      E   +AK  +    L +TG   +  D +  E     +   G + + + G
Sbjct: 192 TQDHLDYHPSFEAYFAAKMRLLTALLPETGQAVITTDGAGAEGAIEAAQGAG-RRVLTVG 250

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +       L+       Q  + + +   +G +  V    IG   A N L+  G+V    A
Sbjct: 251 RRGE---TLKLLSCVPHQGGLALTVSVEEGPAQSVALSLIGDFQADNALVAAGLVIASGA 307

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + +  I+A++      GR +       +G        Y   P ++  A   L  I PH  
Sbjct: 308 EPEAVIEAMAKLSAAPGRMQPAGQKSCEGGMASAFVDYAHTPDAIATA---LRAIKPHVP 364

Query: 369 GRRIAVL 375
           G R+ V+
Sbjct: 365 GGRVVVV 371


>gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
 gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
          Length = 544

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 146/385 (37%), Gaps = 51/385 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVASIGS 80
           V G+ + ++ I   + F A+ G    G  F + A+ +GA  ++ +       +       
Sbjct: 52  VKGVDLRAQGIVTDDLFAALPGARTHGAQFAVDALGRGATAILTDEAGLELIEAADKAPD 111

Query: 81  LSIPVF---GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            S+PV       DVLG ++   +  R   K  ++ ITG+ GKTTT  +L  A++   +  
Sbjct: 112 RSVPVLVHPNPRDVLGEISA-EIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKP 170

Query: 138 ACIGSYNNHIG---VP--LTLARMP-----------VDVDFGIFE-----LGMSHLGEIR 176
             +G+    I    VP  LT    P             +D  + E     L +  +  IR
Sbjct: 171 GLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIR 230

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF--- 231
           F        I   T ++  HL      EE   AKA +F  E   +     +  DD +   
Sbjct: 231 F-------DIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRR 283

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L A   +  + T+ +            +  +   Q++  V   G+S  V     G +
Sbjct: 284 MAELAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRY 343

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N  + L +      D D A++AL         G+  R    Q F  ++D  Y   PA
Sbjct: 344 NVANAALALTVSFAAGLDPDAAVRALGTVDVP---GRVQRIDRGQSFLAVVD--YAHKPA 398

Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376
           +++A I+ L    P   GR   V+G
Sbjct: 399 ALEAVIATLRNQVP---GRVAVVVG 420


>gi|167647631|ref|YP_001685294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           sp. K31]
 gi|189082872|sp|B0T833|MURD_CAUSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167350061|gb|ABZ72796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter sp.
           K31]
          Length = 469

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           AA    K  IIAITG+ GK+TT  ++        +     G+    +   L L  M    
Sbjct: 109 AAPEHKKPKIIAITGTNGKSTTTALIGHLCRQAGRDTRVGGNIGEGV---LGLEDMHGGA 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + EL    L     LT  ++P   V+  I+P HL    G++   +AK  IF    K 
Sbjct: 166 VY-VLELSSYQLD----LTSSLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQGKG 220

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            T  +  DD + + +  +  A   +TI+     K
Sbjct: 221 DTAIIGVDDPWCQQICTEITAANRRTIWPISAGK 254


>gi|298490184|ref|YP_003720361.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
 gi|298232102|gb|ADI63238.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
          Length = 493

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 172/450 (38%), Gaps = 77/450 (17%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           PQ   NGI ++S     QE   A K         IL  V     +   N +  A++  L 
Sbjct: 71  PQVSTNGILLNS-----QEQLSATK--------TILPQVICSTAINTNNLEYKAAL-ELG 116

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI 140
            P+    DVL AL          +    IA+ G+ GKTTT  ++   L  + +  T    
Sbjct: 117 CPILHRSDVLAAL---------IADYYSIAVAGTHGKTTTTSIIGYMLLQAGLDPTILVG 167

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--------HLVR--PHIAVIT 190
           G  N                    +E G + LGE ++L          LV+  P I VIT
Sbjct: 168 GEVN-------------------AWE-GNARLGESKYLVAEADESDGSLVKHSPAIGVIT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H  ++  +EE+     +  +G +   G+I     D+  +        L     YS
Sbjct: 208 NIELDHPDHYENLEEVVDTFQKFAQGCQILVGSIDC---DTVRDCFDRPGQRLKPTISYS 264

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTA 308
                NAD+ +      ++ +   V  + K++ V++   +  H   N L  + +   L  
Sbjct: 265 LHPETNADYTVTNIDYRADGTTALVWEKAKALGVLNLRLLSRHNLSNGLAAVAVGRSLGL 324

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHG 367
           +     K ++ F   EG  +R+         T ID+ Y  +P+ ++A ++  S Q  P  
Sbjct: 325 EFGEIAKGIATF---EGARRRFEFRGEAAGITFIDD-YAHHPSEIRATLAAASLQARP-- 378

Query: 368 EGRRIAVL-------GDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            G+R+  +         +  + + + SF H DL  +  +Y+     L       L D + 
Sbjct: 379 -GQRVVAIFQPHRYSRTLTFLDQFAGSFAHADLVVLTDIYSAGEADLGQISGEQLADEIA 437

Query: 420 RS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +    V Y  T+  +   + S+L  GD+ +
Sbjct: 438 KQHPQVIYQPTLSSIRELLLSTLRPGDLAL 467


>gi|186477420|ref|YP_001858890.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phymatum
           STM815]
 gi|229486477|sp|B2JHF9|MURC_BURP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|184193879|gb|ACC71844.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia phymatum STM815]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 42/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL     P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  E+L   S     K I  +G + +A  Q+R     + +  M    ++     +++
Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVEAREGKMHFTAMREDAPPIDI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTL 341
           V +  G H  QN L  + I + L        +AL+ F+    R +RY      + G +TL
Sbjct: 271 VLNLPGLHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVTVTSGGAYTL 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  M A I+      P    +R+ +             F  D  +VLS  + 
Sbjct: 331 VDD-YGHHPVEMAATIAAARGAFPD---KRLVLAFQPHRFTRTRDCFE-DFVKVLSTVDA 385

Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G   +   D  +L R+I V       + +T+D +   + + + DGDVV+  
Sbjct: 386 LVLTEVYSAGEAPIVAADGRSLTRAIRVAGKVEPVFVDTVDEVPDALGAIVRDGDVVITM 445

Query: 451 SSNSCG 456
            + S G
Sbjct: 446 GAGSIG 451


>gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
 gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
          Length = 489

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 148/370 (40%), Gaps = 30/370 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSI 83
           + G++ DSR+I P   F A+KG H DG DF   AV  GA  V+   D    +    S  +
Sbjct: 21  ITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERDAADRLAQELSKDV 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML----------TIALSSI 133
            ++  D+       +A          ++A+TG+ GKT+    +          + +L +I
Sbjct: 81  VLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQAAGHASASLGTI 140

Query: 134 KKTYACIGSYN-----NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               A   SY      + + +   LAR+  + +     E     L + R     VR   A
Sbjct: 141 GTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHRL--DGVRLVAA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     +E+   AK  +F   L K   + +   + + + + A +   G+  
Sbjct: 199 GFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIAVAQERGLP- 257

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++S G++   + +L K    +    + V+  G++  V+   IG     N L+  G+    
Sbjct: 258 VFSVGEAGE-NIRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVAAGLCICA 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D AI AL+      GR   +      G    ID  Y   P +++ A++ L    P 
Sbjct: 317 GVAPDEAIAALAELKGAPGR-LEFAGRSQTGGTVYID--YAHKPDALENALAAL---RPF 370

Query: 367 GEGRRIAVLG 376
             G+   V+G
Sbjct: 371 ASGQLSVVIG 380


>gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 495

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 32/330 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ I    +  + +  ++ I  DSR       F AIKG   DGH ++  A QKG    VV
Sbjct: 10  LEYISNRDMDQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYVDSAYQKGCRAFVV 69

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTI 128
           N +M  +  ++ I    VDD    L+ ++         +  +I +TG+ GKTT    L  
Sbjct: 70  NDNMDLAEDAIMII---VDDSRNCLSHISANFFGNPSKELKVIGVTGTKGKTTITNYLKS 126

Query: 129 ALSSIKKTYACIGS----YNNHIGVPLTLA----------RMPVDVDFGIFELGMSHLGE 174
            L+        IG+    YN++ G  +             R  VD       + +S  G 
Sbjct: 127 VLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREMVDAGVKCVAMEVSSGGL 186

Query: 175 IRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           +    + V   I + T ++P H+        E+    K+ +F  L + G I ++ D + +
Sbjct: 187 MMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLF-SLCRHGIINIDDDHASY 245

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGI 288
            + KA         I +F   K +D++         ++ + V  +    G++ +      
Sbjct: 246 MIDKATCD------IETFSIKKPSDYRAEDISLTRTKTSLGVDFKYIRDGQASQTHIASP 299

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           G     N L  +   + L  D D  + AL+
Sbjct: 300 GEFSVYNALAVIATANYLGIDKDKMLSALA 329


>gi|198282524|ref|YP_002218845.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667206|ref|YP_002424714.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226706334|sp|B5ELC2|MURC_ACIF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711856|sp|B7J3V1|MURC_ACIF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198247045|gb|ACH82638.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519419|gb|ACK80005.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 135/341 (39%), Gaps = 66/341 (19%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           + GH+    A  +GA +VV+++ +      V +   L IPV    ++L  L +       
Sbjct: 54  FSGHE---AANVRGADVVVISSAIPESNPEVQAARELRIPVIRRAEMLAELMRFKQG--- 107

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                 IAI G+ GKTTT  ++   L +  +  T+  IG      G    L         
Sbjct: 108 ------IAIAGTHGKTTTTSLVASILGAGGLDPTF-VIGGRLKSAGTHAALGS------- 153

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221
           G + +  +   +  FL   + P +AV+T I   H+  + G ++ +  A  +  + L   G
Sbjct: 154 GEYLVAEADESDASFL--YLSPVMAVVTNIDADHMETYGGSLDNLRGAFLQFLQRLPFYG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRK------------WKQCSE 268
              L  D++    L  +     ++T +  +G   +AD Q R             W++   
Sbjct: 212 LAVLCTDEAVVAGLIPE-----LRTPVLRYGFGADADLQARDVTVQGIGSRFAVWRRVDS 266

Query: 269 Q--SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               W++V+L          GI G H   N L  +GI S +     T   AL+ F    G
Sbjct: 267 DYVHWLDVEL----------GIPGRHNVLNALAAIGIASKVGIPESTIATALADFR---G 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            G+R+         T++D+ Y  +P  + A I+    + P 
Sbjct: 314 VGRRFELVGTFDGITVVDD-YGHHPREIAATIAAARSVWPE 353


>gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GKTT   ML   L   +K  A +     +IG PL+      + +     L +S+
Sbjct: 107 AITGTNGKTTITTMLYEMLQ--RKGNAIVAG---NIGFPLSALAYDFEEEEKYVALELSN 161

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +   T    P ++V+  +AP HL     +E    +K  I+E  +K      N DD
Sbjct: 162 FQLLGIET--FAPEVSVVCNLAPDHLDYMPSVEAYYESKMRIYENCQKEDWFLRNVDD 217


>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 512

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 160/389 (41%), Gaps = 48/389 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAF-FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS- 77
           G +P+  ++GIS DSR ++P + F   + GP  +   F+  A+ KGA L+V +   + S 
Sbjct: 26  GDLPE-RLSGISDDSRKVSPGDLFLLRMDGPLQE--KFLDEAIAKGAALLVASRRHLPSV 82

Query: 78  -----IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                +    +PV  V+++  A   +A A          ++ +TG+ GKTT+  ++   L
Sbjct: 83  LERRQVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNGKTTSSFLVRSML 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFELGM---SH-LGE 174
                    IG+    +G  L+ A                 ++ G+  + M   SH L +
Sbjct: 143 DRSGLRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSHALSQ 202

Query: 175 IRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDS 230
            R   T     H    T +   HL      E+  +AKA +   +   G++    +N DD 
Sbjct: 203 DRVAGTFFSAVH---FTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSLPPAVINADDP 259

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +  +L  +    G + + ++G S+       +     +     + ++G+ + V     G 
Sbjct: 260 YGRILAEQIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPGD 319

Query: 291 HMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              QN++  +G    + I    V+  I++L       G   R+  A   G F +I + Y 
Sbjct: 320 FNLQNIMGAVGCALALGISPEAVEAGIQSLP------GVPGRFERANPGGKFAVIVD-YA 372

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
               ++K  +S L  ++P   GR I V G
Sbjct: 373 HTDDALKNILSALRPLTP---GRVITVFG 398


>gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 56/302 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN----HIGVPL------------TLA 154
           I +TG+ GKT+  + +  AL+++ +  A IG+  +    H+ VP             +LA
Sbjct: 113 IGVTGTNGKTSCTQWIAAALTALHQPCAVIGTLGSGMHGHL-VPTGFTTPDAPQLQRSLA 171

Query: 155 RMPVDVDFGIFELGMS------HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           ++    D G   + M       H G +          IAV T +   HL      +   +
Sbjct: 172 QLH---DAGAKAVAMEVSSHALHQGRVNGTAF----DIAVFTNLTQDHLDYHGTFDAYEA 224

Query: 209 AKAEIF--EGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTI-YSFGKSK--NADFQ 259
           AKA++F   GL       +N DD+      E L  +     ++TI Y  G ++  +AD +
Sbjct: 225 AKAKLFAWRGLRAA---IVNRDDAAGCRLLEKLAGR-----VRTIAYGIGDAQTPDADRE 276

Query: 260 LRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIK 315
           L     C+  +     L+      +V    +G     N+L  LG  S+L ADV  D A+ 
Sbjct: 277 LVALDVCATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLG--SLLAADVPFDAAVA 334

Query: 316 ALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            ++      GR +R    L N     +ID  Y   P +++  +  L  I+    GR + +
Sbjct: 335 EIARLESVNGRMQRLGGRLQNDEPLVVID--YAHTPDALEKTLDALRPIAAARGGRLVCM 392

Query: 375 LG 376
            G
Sbjct: 393 FG 394


>gi|84490003|ref|YP_448235.1| hypothetical protein Msp_1211 [Methanosphaera stadtmanae DSM 3091]
 gi|84373322|gb|ABC57592.1| partially conserved hypothetical membrane-spanning protein
           [Methanosphaera stadtmanae DSM 3091]
          Length = 514

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLS 198
           +G   N   +P   +R+  +++  I E G   + G +  L    +P + +IT I P HLS
Sbjct: 150 MGLQGNTADIPPLQSRLNGNIN--ILETGTFGIKGSLEKLAKACKPDVGLITNITPDHLS 207

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
             S   + A  K E+ E L +  T+ +N DD   E L  + +  G   + SFG   N++ 
Sbjct: 208 ENSSFLDYARVKGELVE-LLRNKTLVINNDDPTIESLLKELNYEG--NLISFGLDTNSNK 264

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              K   C ++  ++    G  +   + G+ Y
Sbjct: 265 TTLKQCFCGKKVQIKEFCGGVGVYECNCGLKY 296


>gi|71082732|ref|YP_265451.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|109892719|sp|Q4FPK6|MURC_PELUB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71061845|gb|AAZ20848.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 137/355 (38%), Gaps = 36/355 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I +TGS GKTTT  +L    S  K     I G   N I     L +     D+ I E   
Sbjct: 111 IVVTGSHGKTTTTSLLASIFSKTKLDPTIINGGVLNAIKNSAKLGKS----DWCILEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    I      V P  +++T I   H+  ++ ++++     +    +   G  F+  DD
Sbjct: 167 SDGSFIH-----VPPTYSIVTNIDREHMDFYNSMKDLKELFIKFINKVPSFGKSFICIDD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH- 286
              + L +K   L +K  Y++G    ++F ++  KQ  E S  +  + L GK    +   
Sbjct: 222 KNNKDLLSK---LKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPGKKNLTIRKI 278

Query: 287 ---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF---- 339
               +G H  +N    + +   +    +   K L  F   + R  +        F+    
Sbjct: 279 KLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFTHRETNFYDDYA 338

Query: 340 ---TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEV 395
              T I E  N   A+ K    V+    PH    RI+ L D+ +  E S SF   D+  +
Sbjct: 339 HHPTEIREVLNGVRAAYKNE-EVICIFQPH----RISRLKDLKK--EFSLSFKKADVVIL 391

Query: 396 LSLYNISHVWLSGFHVLAL-KDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +Y        GF      KD +  S + +   E    L  FI++++    +VV
Sbjct: 392 CPIYTAGEKIKLGFKYNNFAKDIVKNSKVRLFMVEDQYQLAKFIKNTIFGKKIVV 446


>gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 537

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83
           V G+++DSR + P + + A+ G +  G  F   A   GA   + +    D+VA+ G   +
Sbjct: 43  VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGADLVAAAG---L 99

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           P   VDD    L  LA  AR+  +     T + +TG+ GKTTT  ++   L S   T   
Sbjct: 100 PALVVDDPRAVLGDLA--ARIHGRPGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGL 157

Query: 140 IGSYNNHI 147
           +G+    I
Sbjct: 158 LGTVETRI 165


>gi|328675240|gb|AEB27915.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida
           3523]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+TG+ GKTTT  +L   L  + K +   +G    H+   + +       D  + E   
Sbjct: 106 LAVTGTHGKTTTSSILATLLCQLDKHSSFVVGGVVKHVDSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  FL   + P +A++T I   H++ +    +        F   E   +I+L  DD
Sbjct: 162 S---DASFL--YLSPQVAIVTNIDLDHMATYKNSYQNLLENFANFISKESVKSIYLCADD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK + L  K I S+G S +AD Q+  +    E +  ++  +G  +       G
Sbjct: 217 QGCRDLLAK-YTLTDKNITSYGFSNDADVQIYDYHIADEITHFKIIYKGDELSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 RYNVQN 281


>gi|110804155|ref|YP_687675.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 5 str.
           8401]
 gi|123343170|sp|Q0T8A6|MURC_SHIF8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110613703|gb|ABF02370.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|332762093|gb|EGJ92362.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 4343-70]
 gi|333009336|gb|EGK28792.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-218]
 gi|333010587|gb|EGK30020.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri VA-6]
 gi|333011479|gb|EGK30893.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-272]
 gi|333021722|gb|EGK40971.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-227]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|74310710|ref|YP_309129.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sonnei Ss046]
 gi|109892739|sp|Q3Z5R8|MURC_SHISS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|73854187|gb|AAZ86894.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella sonnei Ss046]
 gi|323165974|gb|EFZ51754.1| UDP-N-acetylmuramate--alanine ligase [Shigella sonnei 53G]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|326795769|ref|YP_004313589.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
 gi|326546533|gb|ADZ91753.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
          Length = 476

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 106/262 (40%), Gaps = 21/262 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  +++  L++       +      IG  LT A     +    + +  +
Sbjct: 120 IAVAGTHGKTTTTSLMSSILTATGDAPTFV------IGGKLTSAGTNAQLGSSKYLVAEA 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P   ++T I   H+  + G  E++     E    L   G   L  DD
Sbjct: 174 DESDASFL-HL-QPQTVIVTNIDEDHMDTYQGDFEQVKRTFIEFIHNLPFYGLAVLCIDD 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGI 288
              E +++    L  + + ++G  + ADF     KQ          L +G+ + +     
Sbjct: 232 ---ENVRSIMPELS-RPVLTYGIEEQADFYATDIKQSGRYCEFMAHLPEGEPIRIRLPMP 287

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDE 344
           G H   N L T+ + + L    +     L  F   EG G+R++      L+ G   +  +
Sbjct: 288 GKHNVLNALATIAVATDLGVAPNVIQAGLMGF---EGVGRRFQELEPLVLSDGGKAMFVD 344

Query: 345 SYNANPASMKAAISVLSQISPH 366
            Y  +P+ + A I+ +    P 
Sbjct: 345 DYGHHPSEVLATINAIRDGWPE 366


>gi|282875841|ref|ZP_06284708.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           SK135]
 gi|281294866|gb|EFA87393.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           SK135]
 gi|329737161|gb|EGG73415.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU028]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 128/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +  E   LS++  + L
Sbjct: 311 DD-YAHHPREISATIETARKKYPKKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
          Length = 445

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A IIAITGS GKTTT  ++   L +        G    +IG          + ++ + 
Sbjct: 99  TDAKIIAITGSNGKTTTTSLIYYILKNDGLNVGLGG----NIGYSFAKQVADENHEYYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +I+      RP+I+++  ++  HL  ++   EE A AK  I E  E      
Sbjct: 155 EVSSFQLDDIQNF----RPYISLLLNLSQDHLDQYNYNYEEYALAKFRIAENQENDNFFI 210

Query: 225 LNYDDS 230
            N DD 
Sbjct: 211 YNKDDE 216


>gi|315638156|ref|ZP_07893338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
 gi|315481692|gb|EFU72314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
          Length = 477

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
           ++ TII IT S GKT+ K  L   L     T+    S N  +G+   +   +  +    I
Sbjct: 155 NRLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTLMGIVKDINENLQENTQIYI 214

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            E G    G+I  L+  + P I +I  I  AHL  F  IE     K E
Sbjct: 215 AEAGARVKGDILELSSFLEPQICIIGEIGGAHLEYFKNIENTRETKLE 262


>gi|254509131|ref|ZP_05121231.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
 gi|219547928|gb|EED24953.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 154/373 (41%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281
             +  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +GK+ +
Sbjct: 230 AIVCIDDPVVRELVPRIS----RQVITYGFSEDADVRIDNYRQEGQQGKFTVIREGKADL 285

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQG 337
           E+  +  G H   N L     +++ T D  +    L+     +G G+R+          G
Sbjct: 286 EITLNIPGRH---NALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEFETGNG 342

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              L+D+ Y  +P  ++  I    Q + +G E +R+ ++         ++  + D A VL
Sbjct: 343 NAMLVDD-YGHHPTEVEVTI----QAARNGWEDKRLVMIFQPHRYSR-TRDLYDDFANVL 396

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
              ++     V+ +G   +A  D  AL R+I       +D +F+         + + L D
Sbjct: 397 EQVDVLIMLDVYSAGEKPIAGADGRALCRTIRGRGK--LDPIFVPDSQSLPSVLANVLQD 454

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 455 GDLVLTQGAGDVG 467


>gi|194364381|ref|YP_002026991.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia R551-3]
 gi|229620423|sp|B4SJX6|MURC_STRM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194347185|gb|ACF50308.1| UDP-N-acetylmuramate/alanine ligase [Stenotrophomonas maltophilia
           R551-3]
          Length = 478

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 29/255 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLTAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +++IT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMSIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVV 284
           DD     L AK+     + + S+G S  AD  +R      E S M   L   QG S EVV
Sbjct: 228 DDPEVAALAAKTP----RHVMSYGMSPQAD--VRAENVVQEGSRMRFTLRLPQGTSQEVV 281

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFT 340
               G H   N L    +   L    D   +AL  F    G G+R+          G   
Sbjct: 282 LALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGF---AGVGRRFNDLGEVTTASGAKV 338

Query: 341 LIDESYNANPASMKA 355
            I + Y  +P+ ++A
Sbjct: 339 RIIDDYGHHPSELEA 353


>gi|323491028|ref|ZP_08096220.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
 gi|323314692|gb|EGA67764.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 148/378 (39%), Gaps = 67/378 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             +  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  QGK+ 
Sbjct: 230 AIVCVDDPVVRELIPGIS-----RQVITYGFSEDADVRIANYRQEGQQGKFTVIRQGKAD 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           +++  +  G H   N L     +++ T D  +    L+     +G G+R+          
Sbjct: 285 LDITLNIPGRH---NALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEFDTGN 341

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I                 PH   R   +  D   + E   
Sbjct: 342 GHAMLVDD-YGHHPTEVDVTIQAARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVLE--- 397

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQ 438
              +D+  +L +Y+     ++G    A   AL R+I       +D +F+         + 
Sbjct: 398 --QVDVLIMLDVYSAGEKPIAG----ADGRALCRTIRSRGK--LDPIFVPDSKALPSVLA 449

Query: 439 SSLVDGDVVVVKSSNSCG 456
           + L DGD+V+ + +   G
Sbjct: 450 NVLQDGDLVLTQGAGDVG 467


>gi|323190227|gb|EFZ75503.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli RN587/1]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q  +  ++L  + M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRLDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|294012781|ref|YP_003546241.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
           japonicum UT26S]
 gi|292676111|dbj|BAI97629.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
           japonicum UT26S]
          Length = 444

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +   A+A     K  ++ ITG+ GK+TT    T  +  I +T         +IG+P
Sbjct: 96  VIGDIELFALARPSLPKHRVVGITGTNGKSTT----TALVHHIIETAGIPTRMGGNIGLP 151

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L + P+  + G++ L +S   +I  LT  +   +AV+  I P HL  ++G E   ++K
Sbjct: 152 I-LGQTPLP-EGGVYVLELSSY-QID-LTQSLDCDVAVLLNITPDHLDRYNGFEGYVASK 207

Query: 211 AEIF 214
           A +F
Sbjct: 208 ARLF 211


>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
 gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
          Length = 463

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 143/359 (39%), Gaps = 55/359 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS  K+T    L  AL +  +     G    +IG+P+      ++ D   +++ +
Sbjct: 129 VIAITGSNAKSTVTAWLGEALKAGGQKTLVAG----NIGIPV------LETDHAAYDVAV 178

Query: 170 SHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L   +  L   V   IA +  I+  H+  +  +     AK +I+ G     ++  N  
Sbjct: 179 LELSSFQLELLSRVNADIACVLNISEDHMDRYETLAHYVQAKQKIYFG---AASVLYNRS 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + L    H L  +T  S     N  + LRK      Q   E   QG  + +    +
Sbjct: 236 DALTQPL-VPDHVLK-RTFASDAPDLN-HYGLRK------QDGNEWLAQGFDLVLPVSEV 286

Query: 289 ---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLID 343
              G H   N L  L +  +   D    + AL+ F      G  YRC     +   T I+
Sbjct: 287 ALPGGHNVMNALAVLALADMAGNDRSATLTALTSF-----SGLPYRCQAIRERAGITFIN 341

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +S   N  S  AA+  L  +     G  I +L G   +  +LS      LAEV+      
Sbjct: 342 DSKATNVGSTTAALEGLVSV----RGANIHLLAGGQAKDQDLSP-----LAEVIE-QTCK 391

Query: 403 HVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            V+  G      LAL D   R++     ET+   F    ++  +GD+V++  S +C  +
Sbjct: 392 QVYAFGQDRQQFLALTD---RAVEC---ETLSEAFAKANANAQEGDIVLL--SPACASF 442


>gi|167036589|ref|YP_001664167.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115016|ref|YP_004185175.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855423|gb|ABY93831.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928107|gb|ADV78792.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 153/392 (39%), Gaps = 63/392 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L+IP+     +LG +        ++     IA+ GS GKTTT  ++++ L  ++     
Sbjct: 89  ELNIPIIDRATLLGLI--------MKKYKYGIAVAGSHGKTTTTSLISVILDGMEFD--- 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVIT 190
                     P  L    VDV  G   +G S      F+T             P+IAVI 
Sbjct: 138 ----------PTVLVGGEVDVIGGNVRVGSSEY----FVTEACEYTDSFLKFYPYIAVIL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL  F  I+ I  +  +    +   G +    DD+    +    + L  K I ++
Sbjct: 184 NVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYV---VNGLN-KNIVTY 239

Query: 251 GKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
           G  +++D++ +      K C   +  +V  + + M      I G H   N L  L +  +
Sbjct: 240 GIYQDSDWKAKNISFDDKGC---AIFDVYYKEEYMGNFKLSIPGKHNVYNALAALAVSHL 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------- 358
           +  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA +        
Sbjct: 297 VGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKATLEAAKNYPH 352

Query: 359 --VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             ++    PH   R  ++L D    G    +  I +A++ +        +S   ++ L  
Sbjct: 353 KRIICIFQPHTYSRTKSLLNDFA--GSFDNADKIIIADIYAAREKDTGIVSSKDLVEL-- 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              R   V Y +  D +  ++  +   GD+V+
Sbjct: 409 ISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVL 440


>gi|145627891|ref|ZP_01783692.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145639341|ref|ZP_01794947.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|144979666|gb|EDJ89325.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145271644|gb|EDK11555.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|309751215|gb|ADO81199.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2866]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  KGA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|294787087|ref|ZP_06752341.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315226740|ref|ZP_07868528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
 gi|294485920|gb|EFG33554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315120872|gb|EFT84004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
          Length = 510

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 107/269 (39%), Gaps = 34/269 (12%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A    A+  +    A  + ITG+ GKT+T EM +  L +       +G    +IGVP++ 
Sbjct: 98  AWQTRAINPQTGQPAVWVGITGTNGKTSTTEMTSEILQAAGYQAPAVG----NIGVPVSQ 153

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A       + + EL    L      T  +    A IT +A  HL    G E  A+ KA++
Sbjct: 154 AAQDPSNRYLVVELSSFQL----HYTDDLALAGAAITNLADDHLDWHGGFENYAADKAKV 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           + G+ +   +  N DD        ++  A G + + +S    +     +       +Q W
Sbjct: 210 YSGVSQ--VLVYNADDPRVSAKAREARPAPGCRRVGFSLEAPQPGTIGI-------DQGW 260

Query: 272 M----EVQLQGKSMEVVH-------HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +     V  QG+   V          G  Y H+  + L  L +   L  D   A+KALS 
Sbjct: 261 IVNLSPVGPQGRLAPVTDFPHLCEPDGTVYPHLLADALTALALALGLGVDCQVAVKALSS 320

Query: 320 FHPKEGRGKR---YRCALNQGFFTLIDES 345
           F P   R ++   Y+   N      +D+S
Sbjct: 321 FAPGGHRIQKVASYQDPSNGKIIRFVDDS 349


>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 454

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 75/174 (43%), Gaps = 19/174 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V V++++V +     I VFG         ++  A R  SKA I AITG+ GKTTT  +L 
Sbjct: 78  VPVDSEIVKTAQQKKIEVFG---------EVEFAYRF-SKAPIYAITGTNGKTTTTSLLG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHI 186
               +  +     G    +IG PL  A M    D F + E+    L  I+      +P I
Sbjct: 128 EMFKNAGRKVYVAG----NIGYPLIYAVMEASEDAFIVAEISSFQLETIKEF----KPKI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + I  I P HL+     E     K  IFE   +     LN+DD     LK K+ 
Sbjct: 180 SCIINITPDHLNRHKTFENYRDIKGRIFENQRENEYTVLNFDDPVTWSLKNKAK 233


>gi|302557646|ref|ZP_07309988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
 gi|302475264|gb|EFL38357.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
          Length = 462

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 24/213 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++V +   L IPV    D L AL        LR     IA+ G+ GKTTT  ML ++L
Sbjct: 83  NPELVRA-AELGIPVVHRSDALAALMD-----GLRP----IAVAGTHGKTTTTSMLAVSL 132

Query: 131 SSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +++ +  +YA  G  +     P + A        G  E+ ++   E     H   P +A+
Sbjct: 133 TALGREPSYAIGGDLD----APGSNAL------HGGGEIFVAEADESDRSFHKYAPEVAI 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  +   H +N++ +EEI  +       +   GT+ ++ D      L  +     ++T+ 
Sbjct: 183 ILNVELDHHANYASMEEIHQSFETFVGRVVPGGTLVISADHEGARELTRRLDG-SVRTV- 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           ++G+S +AD ++        +S + V+L G  +
Sbjct: 241 TYGESADADVRVLSVVPQGLRSEVTVELDGAPL 273


>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
 gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 125/319 (39%), Gaps = 45/319 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEVMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T  RM   +V+  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRMIEENVNSAVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L      ++     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDREKYAVLNN 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   E     + A    T+ ++G   ++D   +     S  +   +    +S+ +    
Sbjct: 241 DDPVAEEYMRSTAA----TVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPNESINITMKL 296

Query: 288 IGYHMAQNMLMTL--GIVS 304
           IG     N+L  +  G+VS
Sbjct: 297 IGKFNVYNVLAAVAAGLVS 315


>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G +    ++ I  DSR +     F  + G H DGH F + AV+ GA  ++   + +   
Sbjct: 21  VGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVAAVKSGAAALLC--EHIPDG 78

Query: 79  GSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
               +P+    D   AL  +A +         +++ +TG+ GK+TT  M+
Sbjct: 79  VKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGVTGTNGKSTTTYMI 128


>gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
 gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
          Length = 488

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 149/396 (37%), Gaps = 34/396 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +  DSR +  +  FFA+ G   +G D++   ++ G  + VV  ++   +    I +  
Sbjct: 27  NCLETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAEL--KLQRDDIELVS 84

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN--- 144
           V D +  L     A   +  + ++A+TG+ GK++    +      I  +   +G++    
Sbjct: 85  VADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTFGVGP 144

Query: 145 ------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                       + + +   L +M  + VDF  FE     L + R     V    AV + 
Sbjct: 145 LDRLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRI--EGVPFQTAVFSN 202

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +   A AK  +F     + +IF   DD +   + A+  A      YS  
Sbjct: 203 LSRDHLDYHGDMNSYALAKRRLFSFECVSHSIFC-LDDGYAGFM-AEGAARSSCHYYSEQ 260

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            S+ ADF +++           +   G    V    +G    QN L     +     D  
Sbjct: 261 DSR-ADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYGVDDKA 319

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           T I+ LS      GR  + +  L      ++D ++ A+   +      L  +  H  GR 
Sbjct: 320 TLIRGLSTLTGAPGRMDKVQ--LPNAPLVVVDFAHTADALEV-----ALQAVKEHTNGRL 372

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           I V G     G         L    ++ N  +VWL+
Sbjct: 373 ICVFG----CGGDRDRGKRPLMMAAAMKNADYVWLT 404


>gi|313106944|ref|ZP_07793147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
 gi|310879649|gb|EFQ38243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
          Length = 448

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 107/260 (41%), Gaps = 31/260 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   + 
Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q   K + V 
Sbjct: 214 VNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFD-KLLPVG 266

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFT 340
              I G H   N L  L +        D  + AL  F      G  +RC      QG  +
Sbjct: 267 ELKIRGAHNYSNALAALALGHAAGLPFDAMLGALKAFS-----GLAHRCQWVRERQG-VS 320

Query: 341 LIDESYNANPASMKAAISVL 360
             D+S   N  +  AAI  L
Sbjct: 321 YYDDSKATNVGAALAAIEGL 340


>gi|190149288|ref|YP_001967813.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262601|ref|ZP_07544231.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470255|sp|B3GZK9|MURC_ACTP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189914419|gb|ACE60671.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872024|gb|EFN03738.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 165/396 (41%), Gaps = 77/396 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG-- 168
           IA+ G+ GKTTT  M+++  +  K                      P  V+ G+ +    
Sbjct: 121 IAVAGTHGKTTTTAMISMIYTEAKLD--------------------PTFVNGGLVKSAGK 160

Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
            +HLG  R+L            HL +P ++V+T I P H+  + G  E++ +   +    
Sbjct: 161 NAHLGASRYLIAEADESDASFLHL-QPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFLRN 219

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQ 275
           L   G   +  DD   E +   +  +G + + ++G S+ AD+++  ++Q   Q  +  V 
Sbjct: 220 LPFYGLAVMCADD---ETVMEIAPQVG-RQVLTYGFSEKADYRIEDYQQTGFQGHYTVVC 275

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331
             G+ ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+     
Sbjct: 276 PNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILAALADF---QGAGRRFDQLGS 332

Query: 332 CALNQGFFTLIDESYNANPA----SMKAAIS------VLSQISPHGEGRRIAVLGDMCEM 381
                G   L+D+ Y  +P     ++KAA S      V+    PH   R   +  D  ++
Sbjct: 333 FIRPNGKVMLVDD-YGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQV 391

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLF 434
             LSQ   +D   +L +Y      + G    A   AL RSI        +  S+T D L 
Sbjct: 392 --LSQ---VDALIMLEVYAAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-DQLG 441

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +   + DGD+++ + + S    R+   L E + A
Sbjct: 442 EVLDQIIQDGDLILAQGAGSVS--RISRGLAESWKA 475


>gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 11/186 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           IAITG+ GKTTT  +L   L  + K  + I      +G  +  A   + V+ G  +L + 
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +   +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKDDDLSFKLQLPG 275

Query: 290 YHMAQN 295
            +  QN
Sbjct: 276 RYNVQN 281


>gi|254450302|ref|ZP_05063739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
 gi|198264708|gb|EDY88978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 26/114 (22%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  ++   L               H G P  LA    ++  G+ +L  
Sbjct: 122 VIAVTGSNGKSTTSALIHHIL--------------EHAGRPAQLAG---NIGRGVLDLDE 164

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +H GE+       + T L R   P +AV T ++P HL   +G+    +AK  +F
Sbjct: 165 AHDGEVIVLELSSYQTDLARALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRLF 218


>gi|169829638|ref|YP_001699796.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus sphaericus
           C3-41]
 gi|229620041|sp|B1HX90|MURC_LYSSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168994126|gb|ACA41666.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus sphaericus
           C3-41]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 34/296 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GKT+T  ++   +   K T   IG      G     A    + DF + E    
Sbjct: 104 IAITGAHGKTSTTGLMAHVVGGYKPTSYLIGD-----GTGAGHA----NADFFVME---- 150

Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E R  FL +   P  AV+T I   H   F+ IE++ SA   +   L+    I    D
Sbjct: 151 -ACEYRRHFLAY--NPDYAVMTNIDFDHPDYFANIEDVYSAFQSL--ALQVKKAIIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + ++AK     +  +Y +G     DF+ R  ++ +E +  +V ++ +        I
Sbjct: 206 DEQLQRIQAK-----VPVVY-YGFGSENDFEARNVEKTTEGTKFDVFVRNEFYSTFF--I 257

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  +L TL ++++   +  +        H  +G  +R+    + G   LID+ Y  
Sbjct: 258 PLFGDHAILNTLAVITLCEYEGISPDIIQDRLHTYKGVKRRF-TETDIGDNVLIDD-YAH 315

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +P  ++A I    Q  P  E   +A+          +Q+F  D A+ LSL + +++
Sbjct: 316 HPTEIRATIQSARQKFPDRE--LVAIF--QPHTFTRTQAFLQDFADSLSLADTAYL 367


>gi|16128084|ref|NP_414633.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89106974|ref|AP_000754.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170021553|ref|YP_001726507.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079730|ref|YP_001729050.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495590|ref|ZP_03002860.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|238899492|ref|YP_002925288.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|254037506|ref|ZP_04871583.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|256025405|ref|ZP_05439270.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia sp. 4_1_40B]
 gi|300905500|ref|ZP_07123264.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300919646|ref|ZP_07136137.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300923127|ref|ZP_07139187.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300949891|ref|ZP_07163854.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300955957|ref|ZP_07168290.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|301028574|ref|ZP_07191804.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|301303808|ref|ZP_07209928.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|301330128|ref|ZP_07222797.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301646403|ref|ZP_07246285.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|307136692|ref|ZP_07496048.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli H736]
 gi|331640544|ref|ZP_08341692.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|127536|sp|P17952|MURC_ECOLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028987|sp|B1IR87|MURC_ECOLC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620033|sp|B1XC68|MURC_ECODH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509769|sp|C4ZRI6|MURC_ECOBW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|40859|emb|CAA38868.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli]
 gi|42056|emb|CAA36868.1| (UDP-N-acetylmuramate: L-alanine ligase) (AA 1-491) [Escherichia
           coli]
 gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|21321972|dbj|BAB96659.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169756481|gb|ACA79180.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli ATCC 8739]
 gi|169887565|gb|ACB01272.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188490789|gb|EDU65892.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|226840612|gb|EEH72614.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|238863750|gb|ACR65748.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|260450702|gb|ACX41124.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli DH1]
 gi|299878385|gb|EFI86596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|300317177|gb|EFJ66961.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|300402650|gb|EFJ86188.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300413286|gb|EFJ96596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300420582|gb|EFK03893.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300450723|gb|EFK14343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300840935|gb|EFK68695.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|300843875|gb|EFK71635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301075373|gb|EFK90179.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|309700302|emb|CBI99590.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli ETEC H10407]
 gi|315134785|dbj|BAJ41944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli DH1]
 gi|315253165|gb|EFU33133.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 85-1]
 gi|315616130|gb|EFU96749.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 3431]
 gi|323939869|gb|EGB36069.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E482]
 gi|331040290|gb|EGI12497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|228660|prf||1808265A murC gene
          Length = 491

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
          Length = 485

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 137/372 (36%), Gaps = 41/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR +     FFAIKG   DGH +I  AV+ GA  VV    +  +   L   VF
Sbjct: 23  IKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGEESL--NPACLYFEVF 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L  ++             ++ + G+ GKTT   ++      +      IG+  + 
Sbjct: 81  NTKKALAIISS-KFYGEPSKNMNLVGVIGTNGKTTITYLIQHVFECLGIDSGLIGTNGSW 139

Query: 147 IGVPLTLAR-MPVDVDFG-IFELGMSHLGEIRFLTHLVRPH-------------IAVITT 191
           +G     +R  P+  D   + + G+ H   + ++   V  H               + T 
Sbjct: 140 VGQKKKASRTTPLSPDLNELLQEGVRH--NLPYVVMEVSSHGIKENRVDQLDFDRLIFTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGI-----K 245
           I   HL      E+    K   F         F +YDD    ++     HA         
Sbjct: 198 ITEEHLDYHKTFEDYLFTKMRPF-------IQFSDYDDKKMAIINCDDEHASSFISVTNS 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G    AD   +  +   E++   + ++G+ + ++     G +   N+L  L    
Sbjct: 251 KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTIPLFGKYNVYNVLSVLAYFY 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  +  +      EGR +  +     G   +ID  Y  NP ++   +S L+ IS
Sbjct: 311 SLGYAPEQIVPFIENVSVIEGRFEYIQAP--SGVTVVID--YAHNPDAIFQVLSCLNVIS 366

Query: 365 PHGEGRRIAVLG 376
               G  I VLG
Sbjct: 367 T---GNIITVLG 375


>gi|227885004|ref|ZP_04002809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|227837833|gb|EEJ48299.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|307551935|gb|ADN44710.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli ABU 83972]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 147

 Score = 43.9 bits (102), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           + G+ +DSR I     F  + G      D H F+  AV+ GA  ++V  D+     ++ I
Sbjct: 23  ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           P   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS
Sbjct: 78  PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILS 127


>gi|68249688|ref|YP_248800.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260581812|ref|ZP_05849608.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|81335883|sp|Q4QLF7|MURC_HAEI8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68057887|gb|AAX88140.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260095005|gb|EEW78897.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|309973394|gb|ADO96595.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2846]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  KGA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|15799775|ref|NP_285787.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           EDL933]
 gi|15829349|ref|NP_308122.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. Sakai]
 gi|26246024|ref|NP_752063.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli CFT073]
 gi|91209155|ref|YP_539141.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UTI89]
 gi|157154862|ref|YP_001461261.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli E24377A]
 gi|157159562|ref|YP_001456880.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli HS]
 gi|168751399|ref|ZP_02776421.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755699|ref|ZP_02780706.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764030|ref|ZP_02789037.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771315|ref|ZP_02796322.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776935|ref|ZP_02801942.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781976|ref|ZP_02806983.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789618|ref|ZP_02814625.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801518|ref|ZP_02826525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|170683694|ref|YP_001742213.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SMS-3-5]
 gi|193065876|ref|ZP_03046937.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|193070828|ref|ZP_03051761.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194429353|ref|ZP_03061878.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194434422|ref|ZP_03066684.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194439419|ref|ZP_03071496.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|195939307|ref|ZP_03084689.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806463|ref|ZP_03248800.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812324|ref|ZP_03253653.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819975|ref|ZP_03260295.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400617|ref|YP_002268699.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215485257|ref|YP_002327688.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325189|ref|ZP_03441273.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552674|ref|YP_002385587.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI1]
 gi|218557031|ref|YP_002389944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli S88]
 gi|218687968|ref|YP_002396180.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ED1a]
 gi|218693560|ref|YP_002401227.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 55989]
 gi|237704240|ref|ZP_04534721.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|253774879|ref|YP_003037710.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160213|ref|YP_003043321.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|254791228|ref|YP_003076065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|256020071|ref|ZP_05433936.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sp. D9]
 gi|260842327|ref|YP_003220105.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260866244|ref|YP_003232646.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261226848|ref|ZP_05941129.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255252|ref|ZP_05947785.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291280916|ref|YP_003497734.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|293417967|ref|ZP_06660589.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|293476751|ref|ZP_06665159.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|297518216|ref|ZP_06936602.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli OP50]
 gi|300816129|ref|ZP_07096352.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|300821904|ref|ZP_07102048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300931782|ref|ZP_07147082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300938486|ref|ZP_07153226.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300981128|ref|ZP_07175374.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|301048483|ref|ZP_07195508.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|306815311|ref|ZP_07449460.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|312966219|ref|ZP_07780445.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|331661137|ref|ZP_08362069.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331666328|ref|ZP_08367209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331680665|ref|ZP_08381324.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332281221|ref|ZP_08393634.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|54037856|sp|P65471|MURC_ECO57 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041506|sp|P65470|MURC_ECOL6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122425020|sp|Q1RGA4|MURC_ECOUT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017280|sp|A7ZHI2|MURC_ECO24 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017281|sp|A7ZW43|MURC_ECOHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706321|sp|B5YZC7|MURC_ECO5E RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711864|sp|B7MAL4|MURC_ECO45 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711866|sp|B7M134|MURC_ECO8A RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711868|sp|B1LG28|MURC_ECOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766001|sp|B7UIE1|MURC_ECO27 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766002|sp|B7LFW1|MURC_ECO55 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766003|sp|B7MNV0|MURC_ECO81 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12512797|gb|AAG54395.1|AE005186_1 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Escherichia coli O157:H7 str. EDL933]
 gi|26106421|gb|AAN78607.1|AE016755_107 UDP-N-acetylmuramate--alanine ligase [Escherichia coli CFT073]
 gi|13359551|dbj|BAB33518.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli O157:H7 str.
           Sakai]
 gi|91070729|gb|ABE05610.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli UTI89]
 gi|157065242|gb|ABV04497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli HS]
 gi|157076892|gb|ABV16600.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E24377A]
 gi|170521412|gb|ACB19590.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli SMS-3-5]
 gi|187767764|gb|EDU31608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014538|gb|EDU52660.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000410|gb|EDU69396.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357039|gb|EDU75458.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359896|gb|EDU78315.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365892|gb|EDU84308.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370793|gb|EDU89209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376362|gb|EDU94778.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|192926463|gb|EDV81096.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|192955858|gb|EDV86328.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194412573|gb|EDX28870.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194417338|gb|EDX33445.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194421678|gb|EDX37688.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|208726264|gb|EDZ75865.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733601|gb|EDZ82288.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740098|gb|EDZ87780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162017|gb|ACI39450.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746534|gb|ACI71574.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746536|gb|ACI71575.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746538|gb|ACI71576.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746540|gb|ACI71577.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746542|gb|ACI71578.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|215263329|emb|CAS07644.1| UDP-N-acetylmuramate: L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217321410|gb|EEC29834.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350292|emb|CAU95975.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli 55989]
 gi|218359442|emb|CAQ96980.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI1]
 gi|218363800|emb|CAR01460.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli S88]
 gi|218425532|emb|CAR06315.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli ED1a]
 gi|222031922|emb|CAP74660.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli LF82]
 gi|226902152|gb|EEH88411.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|242375927|emb|CAQ30608.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli BL21(DE3)]
 gi|253325923|gb|ACT30525.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972114|gb|ACT37785.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|253976323|gb|ACT41993.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli BL21(DE3)]
 gi|254590628|gb|ACT69989.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757474|dbj|BAI28971.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257762600|dbj|BAI34095.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281177311|dbj|BAI53641.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE15]
 gi|284919871|emb|CBG32926.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli 042]
 gi|290760789|gb|ADD54750.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|291321204|gb|EFE60646.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|291430685|gb|EFF03683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|294492769|gb|ADE91525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli IHE3034]
 gi|300299669|gb|EFJ56054.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|300409030|gb|EFJ92568.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|300456555|gb|EFK20048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300460442|gb|EFK23935.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300525504|gb|EFK46573.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300531336|gb|EFK52398.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|305850973|gb|EFM51428.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|307629665|gb|ADN73969.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UM146]
 gi|312289462|gb|EFR17356.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|312944697|gb|ADR25524.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315285163|gb|EFU44608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 110-3]
 gi|315294714|gb|EFU54057.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 153-1]
 gi|315300008|gb|EFU59246.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 16-3]
 gi|320179653|gb|EFW54602.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii ATCC 9905]
 gi|320190386|gb|EFW65036.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197458|gb|EFW72072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli WV_060327]
 gi|320642130|gb|EFX11481.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. G5101]
 gi|320647493|gb|EFX16288.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. 493-89]
 gi|320652827|gb|EFX21065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. H 2687]
 gi|320658216|gb|EFX25945.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663525|gb|EFX30809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668837|gb|EFX35632.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323160111|gb|EFZ46072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E128010]
 gi|323171254|gb|EFZ56902.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli LT-68]
 gi|323176399|gb|EFZ61991.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1180]
 gi|323935143|gb|EGB31510.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1520]
 gi|323945720|gb|EGB41768.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H120]
 gi|323950913|gb|EGB46790.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H252]
 gi|323955289|gb|EGB51062.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H263]
 gi|323960037|gb|EGB55683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H489]
 gi|323964813|gb|EGB60280.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli M863]
 gi|323970763|gb|EGB66017.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TA007]
 gi|323975745|gb|EGB70841.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TW10509]
 gi|324008326|gb|EGB77545.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 57-2]
 gi|324118441|gb|EGC12335.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1167]
 gi|326345189|gb|EGD68932.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1125]
 gi|326346957|gb|EGD70691.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1044]
 gi|327255069|gb|EGE66672.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli STEC_7v]
 gi|331052179|gb|EGI24218.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331066539|gb|EGI38416.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331072128|gb|EGI43464.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332095382|gb|EGJ00405.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 5216-82]
 gi|332097809|gb|EGJ02782.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 155-74]
 gi|332103573|gb|EGJ06919.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|332341423|gb|AEE54757.1| UDP-N-acetylmuramate--alanine ligase MurC [Escherichia coli UMNK88]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|326390852|ref|ZP_08212404.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993111|gb|EGD51551.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 464

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 141/361 (39%), Gaps = 55/361 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ GS GKTTT  ++++ L  +                P  L    VDV  G   +G S
Sbjct: 112 IAVAGSHGKTTTTSLISVILDGMGFD-------------PTVLVGGEVDVIGGNVRVGNS 158

Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                 FLT             P+IAVI  +   HL  F  I+ I  +  +    +   G
Sbjct: 159 EY----FLTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQ 277
            +    DD+    +    + L  K I ++G  +++D++ +      K C   +  +V  +
Sbjct: 215 FVVACKDDANTMYV---VNGLN-KNIVTYGIYQDSDWKAKNISFDDKGC---AIFDVYYK 267

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + M      I G H   N L  L +  ++  D+  A   L+ F   +G  +R+      
Sbjct: 268 EEYMGNFKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIV 324

Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              T++D+ Y  +PA +KA +          ++    PH   R  ++L D    G    +
Sbjct: 325 DGITIVDD-YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFA--GSFDNA 381

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             I +A++ +        +S   ++ L     R   V Y +  D +  ++  +   GD+V
Sbjct: 382 DKIIIADIYAAREKDTGIVSSKDLVEL--ISQRGKDVLYLKDFDSIVEYLNKNAKTGDLV 439

Query: 448 V 448
           +
Sbjct: 440 L 440


>gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
 gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
          Length = 472

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 177/444 (39%), Gaps = 81/444 (18%)

Query: 51  YDGH--DFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAA 102
           Y+GH  D++      GA  +VV+T +      V    SL IPV     +L  L       
Sbjct: 54  YEGHSADYL-----DGADAIVVSTAVSQGNPEVLKARSLHIPVVPRAIMLAEL------M 102

Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           RL+S    IA+ G+ GKTTT  ++   +A   +  T+  IG   N  G    L       
Sbjct: 103 RLKSG---IAVAGTHGKTTTTSLVASVLATGGLDPTF-VIGGRLNSAGANAKLGTG---- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E   S   +  FL HL  P IA+IT I   H+  +   + ++  A  E  + L  
Sbjct: 155 DYIVVEADES---DASFL-HLF-PTIAIITNIDSDHMDTYGHDVAKLRGAFVEFAQRLPF 209

Query: 220 TGTIFLNYDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV- 274
            G+  +  DD    +    +   S         ++G ++ A F+    +    +   +V 
Sbjct: 210 YGSAIICTDDENVRNIMPFISCSS--------TTYGLNEQAHFRAINIENNGTRMEFDVI 261

Query: 275 -QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT----ADVDTAIKALSVFHPKEGRGKR 329
            + QGK +  +H  +      N+L  L  +++ T    AD D   KALS F+   G  +R
Sbjct: 262 RKYQGKELPQLHISLNIPGQHNVLNALAAIAVGTEVGVADSDIE-KALSEFN---GVSRR 317

Query: 330 YRCALN--------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           +    +         G FT+ID+ Y  +P  M A I       P    RR+         
Sbjct: 318 FTQVGDFDVIQNNGGGKFTVIDD-YGHHPVEMDATIQAARGAWPT---RRLVFAFQPHRY 373

Query: 382 GELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETM 430
                 F  D   VL   +   +S V+ +G   +   D  AL R++ V       + E +
Sbjct: 374 TRTRDCFE-DFVNVLGKADAVILSEVYPAGESPIVAADGRALARALRVAGHVEPIFVEDI 432

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNS 454
           + +   I     DGDVV+   + S
Sbjct: 433 NDMPKAILKIAKDGDVVICSGAGS 456


>gi|188532903|ref|YP_001906700.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia tasmaniensis
           Et1/99]
 gi|188027945|emb|CAO95802.1| UDP-N-acetylmuramate-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 500

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 131 IAVAGTHGKTTTTAM----VSSI---YAEGGLD-------------PTFVNGGLVKAAGT 170

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 171 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 229

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   L  DD+    L  +   +G + I ++G S++AD ++  ++Q   Q    +  
Sbjct: 230 LPFYGRAVLCVDDTVIRELIPR---VG-RQITTYGFSEDADVRVENYRQRGAQGHFTLVR 285

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  M+V  +  G H A N    + + +    D +  + AL  F   +G G+R+
Sbjct: 286 QDKPLMQVTLNAPGRHNALNAAAAVAVATEENIDDEDILAALESF---QGTGRRF 337


>gi|117924062|ref|YP_864679.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
 gi|166224701|sp|A0L5N0|MURC_MAGSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117607818|gb|ABK43273.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 119/331 (35%), Gaps = 66/331 (19%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +L IPV    ++L  L +L            IAI G+ GKTTT  ++   L +       
Sbjct: 86  ALRIPVVPRAEMLAELMRLKYG---------IAIAGTHGKTTTTSLVAALLGAADMDPTV 136

Query: 140 IGS-------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +          N H+G              G F +  +   +  FL   + P IAV+T +
Sbjct: 137 VNGGIVKSLGSNAHVGQ-------------GAFLVTEADESDGSFLK--LSPTIAVVTNM 181

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H++++   + +  A       +   G   L  D     LL   +  +  K + ++G 
Sbjct: 182 DPEHMNHYGTFDAVREAFRGFVSKIPFYGLAVLCGDHPEVSLL---AEEMLDKRVITYGL 238

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-------------IGYHMAQNMLMT 299
           S   D Q    +Q    +  EV    +     HHG              G H   N L  
Sbjct: 239 SDQVDLQAVHIRQEGIVTHFEVIQHDR-----HHGRESRSLGTIQLNMPGCHNVSNTLAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS- 358
           L +   L    +  ++AL+ F    G  +R+     +   T+ID+ Y  +P  + A +  
Sbjct: 294 LAVAMELAVPWERCVRALAGF---GGVQRRFDLLHQEAAITIIDD-YAHHPVEIAATMEA 349

Query: 359 ---------VLSQISPHGEGRRIAVLGDMCE 380
                    V++   PH   R +  + D C 
Sbjct: 350 VRNGYPQQRVVAVFQPHRYSRVLDHMHDFCR 380


>gi|258645243|ref|ZP_05732712.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
 gi|260402593|gb|EEW96140.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
          Length = 469

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 55/303 (18%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----------TI 128
           S  +P+F   DVL A+ K             IA+ G+ GK+TT  M+           TI
Sbjct: 88  SRDLPIFHRSDVLAAIFKWGKG---------IAVAGAHGKSTTSAMIGQIFHVAKMDPTI 138

Query: 129 ALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            L       K  +C+G +  HI                I E   S    ++F T L    
Sbjct: 139 VLGGFTDYLKGNSCLG-HGEHI----------------IAEADESDGSFLKFATFL---- 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGI 244
            +V+T I   HL ++  +E I  A  E    +  K G   +  D    + +  +      
Sbjct: 178 -SVVTNIEDDHLDHYGTVENIRKAFVEFLNHVTYKDGGAIVCIDSEGVQAILPQIK---- 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
           K + SFG + +A+++    +   +    +V    + +  V   I G H  ++ L  + + 
Sbjct: 233 KKVISFGINDSAEYRAVNKRYKKQNMLFDVYHYKEKLGTVSLQIPGIHNVRDALGAIVVA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +T++KALSVF    G  +R++  + +    ++D+ Y  +P  + A +    ++
Sbjct: 293 LYCGISFETSVKALSVF---SGVKRRFQTKMKEHGVWIVDD-YAHHPTEIAATLKAAKEM 348

Query: 364 SPH 366
             H
Sbjct: 349 GRH 351


>gi|170700184|ref|ZP_02891202.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
 gi|170134916|gb|EDT03226.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 26/269 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRI 372
           + Y  +P  M A ++      P   GRR+
Sbjct: 333 D-YGHHPVEMAATVAAARGAFP---GRRL 357


>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf0-1]
 gi|118595675|sp|Q3K742|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf0-1]
          Length = 448

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 152/358 (42%), Gaps = 34/358 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AI+GS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G ++     +
Sbjct: 162 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQ---FVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  D+    L  +      +  ++FG SK  DF+    ++ + + ++  + Q   M V  
Sbjct: 215 NRQDALTRPLMGEG-----QPCWTFGLSK-PDFKAFGLREENGEKYLAFEFQ-NLMPVRE 267

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I G H   N L  L +   +    D  + AL  F   E R +  R     G++     
Sbjct: 268 LKIRGAHNQSNALAALALGHAVGLPFDAMLVALRTFAGLEHRCQWVRDLDGVGYYN---- 323

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             ++   ++ AA++ +  +    +G+ + + G     G+   +   DL + ++ +    V
Sbjct: 324 --DSKATNVGAALAAIEGLGADIDGKVVLIAG-----GDGKGAEFKDLRDPVATH-CRAV 375

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            L G     + +A+  ++ +  + T+       +++   GDVV++  S +C  + + N
Sbjct: 376 ILMGRDSDKIGEAIGDAVPLIRATTLVDAVAQCRAAAQPGDVVLL--SPACASFDMFN 431


>gi|83858914|ref|ZP_00952436.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853737|gb|EAP91589.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 23/214 (10%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +R  + +IT I P H+ ++   + +  A A+  E L   G   L  D    + L A+   
Sbjct: 176 LRGSVGIITNIDPEHMEHYGSFDALRDAFAQFVENLPFYGFAVLCIDHPEVQALAAR--- 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQN 295
           +  + + ++G S  AD +L            ++  Q + +E V         +G H   N
Sbjct: 233 IEDRRVITYGFSPQADVRLSNLVMDETGGHFDLTFQPRGIEPVTWAGMSLPMMGEHNVLN 292

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L +V  L    + A  ALS F    G  +R+         T++D+ Y  +P  + A
Sbjct: 293 AAGALAVVQALGGGEEEARTALSGF---TGVKRRFTITGQAHGVTVVDD-YGHHPVEITA 348

Query: 356 AISVLSQ----------ISPHGEGRRIAVLGDMC 379
            +    Q          + PH   R   +  D C
Sbjct: 349 VLKAARQRVGAGRVHAVVQPHRYSRLHDLFEDFC 382


>gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 483

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 137/372 (36%), Gaps = 41/372 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +  DSR +     FFAIKG   DGH +I  AV+ GA  VV    +  +   L   VF
Sbjct: 21  IKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGEESL--NPACLYFEVF 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                L  ++             ++ + G+ GKTT   ++      +      IG+  + 
Sbjct: 79  NTKKALAIISS-KFYGEPSKNMNLVGVIGTNGKTTITYLIQHVFECLGIDSGLIGTNGSW 137

Query: 147 IGVPLTLAR-MPVDVDFG-IFELGMSHLGEIRFLTHLVRPH-------------IAVITT 191
           +G     +R  P+  D   + + G+ H   + ++   V  H               + T 
Sbjct: 138 VGQKKKASRTTPLSPDLNELLQEGVRH--NLPYVVMEVSSHGIKENRVDQLDFDRLIFTN 195

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH------ALGIK 245
           I   HL      E+    K   F         F +YDD    ++           ++   
Sbjct: 196 ITEEHLDYHKTFEDYLFTKMRPF-------IQFSDYDDKKMAIINCDDEHASSFISVTNS 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G    AD   +  +   E++   + ++G+ + ++     G +   N+L  L    
Sbjct: 249 KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTIPLFGKYNVYNVLSVLAYFY 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  +  +      EGR +  +     G   +ID  Y  NP ++   +S L+ IS
Sbjct: 309 SLGYAPEQIVPFIENVSVIEGRFEYIQAP--SGVTVVID--YAHNPDAIFQVLSCLNVIS 364

Query: 365 PHGEGRRIAVLG 376
               G  I VLG
Sbjct: 365 T---GNIITVLG 373


>gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
 gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
          Length = 489

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 149/381 (39%), Gaps = 57/381 (14%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI G+ GKTTT  ++   +A + +  T+  IG   N  GV   L       D+ + E  
Sbjct: 108 VAIAGTHGKTTTTSLVASILAKAGLDPTF-VIGGRLNSAGVNARLG----SGDYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P IA +T I   H+  +   +  +  A  +    L   G+  L  
Sbjct: 163 ES---DASFLNLL--PMIAAVTNIDADHMDTYGHDMARLKQAFVDFLNRLPFYGSAVLCL 217

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEV 283
           DD    E++   S     K   ++G  ++A  Q+R     +E   M  Q+  ++   +EV
Sbjct: 218 DDPHVREIVPFVS-----KPTITYGLGEDA--QVRAVDVRAEGDRMHFQVLRENEPPLEV 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------------- 330
                G H  +N L  + I + L    +  + AL+ F     R +RY             
Sbjct: 271 SLALSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRFERYGEVPVPVREGREG 330

Query: 331 ----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               + A   G FTLID+ Y  +P  ++A +  +    P    RR+ VL         ++
Sbjct: 331 AQAGQTAAASGTFTLIDD-YGHHPVEIEATLRAVRGAFPT---RRL-VLAFQPHRYSRTR 385

Query: 387 SFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV- 442
               D   VL + +   ++ V+ +G   +   D       V  +   D LF+   + L  
Sbjct: 386 DLFEDFVRVLGMADQLILTEVYAAGEPPIVAADGRALVRAVRLASQRDPLFVADVAELPT 445

Query: 443 -------DGDVVVVKSSNSCG 456
                   GDVV+   + S G
Sbjct: 446 TVLGLVQPGDVVITMGAGSIG 466


>gi|254525136|ref|ZP_05137191.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
 gi|219722727|gb|EED41252.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 29/255 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLTAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +++IT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMSIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVV 284
           DD     L AK+     + + S+G S  AD  +R      E S M   L   QG S EVV
Sbjct: 228 DDPEVAALAAKTP----RHVMSYGMSPQAD--VRAENVVQEGSRMRFTLRLPQGTSQEVV 281

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFT 340
               G H   N L    +   L    D   +AL  F    G G+R+          G   
Sbjct: 282 LALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGF---AGVGRRFNDLGEVTTASGAKV 338

Query: 341 LIDESYNANPASMKA 355
            I + Y  +P+ ++A
Sbjct: 339 RIIDDYGHHPSELEA 353


>gi|329115575|ref|ZP_08244297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
 gi|326695003|gb|EGE46722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
          Length = 499

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           SKA  + ITG+ GK+TT  +L   L+  K   A  G+             +P+  D G++
Sbjct: 150 SKARFVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLG------PAALALPLLPDNGVY 203

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L MS     R  T  +R   A +  + P HL   +G++  A AK  +F G        +
Sbjct: 204 VLEMSSYMLERLDT--LRFDAACLLNLTPDHLDRHAGMDGYAQAKKRVFTGQTGKDMAVV 261

Query: 226 NYDDSFFELLKAK 238
             DD++   + A+
Sbjct: 262 GMDDTWCRTIAAE 274


>gi|319953738|ref|YP_004165005.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Cellulophaga
           algicola DSM 14237]
 gi|319422398|gb|ADV49507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           algicola DSM 14237]
          Length = 444

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 23/133 (17%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVD 161
           + A II ITGS GKTTT    T+ ++ I K+         H+G+   +    A+M  + D
Sbjct: 100 TDAKIIGITGSNGKTTT----TMLVNHILKSEGL------HVGMAGNIGDSYAKMVAEND 149

Query: 162 FGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
           F  + L +S     G + F     +PHIA++T I+P HL  +    E   ++K  I E  
Sbjct: 150 FEYYVLEISSFQLDGIVDF-----KPHIAILTNISPDHLDRYDYKYENYIASKFRIAENQ 204

Query: 218 EKTGTIFLNYDDS 230
            +      + DD 
Sbjct: 205 TEDDYFIYDADDK 217


>gi|319897394|ref|YP_004135591.1| udp-n-acetylmuramate:l-alanine ligase [Haemophilus influenzae
           F3031]
 gi|317432900|emb|CBY81266.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3031]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  KGA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|169824118|ref|YP_001691729.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
 gi|167830923|dbj|BAG07839.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 461

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 143/373 (38%), Gaps = 42/373 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           + A +R+    I ++GS GK+TT  M+   L   K         +  I +   L  +  +
Sbjct: 104 LGALMRNYKYSIGVSGSHGKSTTTSMIAKILIDAK--------VDPSILLGGKLDEIQGN 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V  G  E  ++   E +       P +A+I  I   HL  +  +  I +      + L++
Sbjct: 156 VHCGNSEYMLTEACEYKANILNYYPSMAIILNIDEDHLDFYKDLNHIVATFIGYMKNLDE 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--WKQCSEQSW-MEVQ 275
                +N DD   E L   SH  G   I +FG +++ AD+ +    + +    S+ +  +
Sbjct: 216 NSKAIINIDDKNCEPL--LSHIKG--EIITFGIENEKADYNVHDITFNENGNPSFVVSSE 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              K  E     IG H   + +  +        D+DT  K +  +H        +R    
Sbjct: 272 KFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYH------NLHRRMET 325

Query: 336 QGFF--TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGEL 384
            GF+    +   Y  +P  +K  +  L +           PH   R   +L D       
Sbjct: 326 IGFYKGCEVKTDYGHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFA----- 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVD 443
           +  +  D   V  +Y     + S  H   L + L ++ ++  Y +T +    +I+S + D
Sbjct: 381 NAFYDCDEVVVTEIYAAREKFDSSIHSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCD 440

Query: 444 GDVVVVKSSNSCG 456
            D+V+   +  CG
Sbjct: 441 NDLVL---TTGCG 450


>gi|145637109|ref|ZP_01792772.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
 gi|145269763|gb|EDK09703.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  KGA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
 gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 79/384 (20%), Positives = 153/384 (39%), Gaps = 69/384 (17%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI+G+ GKTTT  ML+ I LS+       +G   + I   + +     + D+ + E   
Sbjct: 114 IAISGTHGKTTTTSMLSHITLSANLDPTILVGGNLDVINGNVRVG----NSDYFVTEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                ++F      P+I +I  I   HL  +  I +I +   +  + + K G + +N DD
Sbjct: 170 YKASFLKFY-----PYIGIILNIEADHLDFYKDINDIQNTFLKFAKLIPKDGFLIVNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
              E   A S  +    + +FG      ++KN +F     +   +    + +L   ++ V
Sbjct: 225 ---ERCLAVSKEVDC-NVMTFGINNGEVRAKNIEFN--NGRPTFDVYRNDTKLFSLTLNV 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   + L ++     L  D D+ I+ LS F+   G  +R+         T++D
Sbjct: 279 P----GNHNILDSLASISASLSLNVDTDSIIEGLSTFY---GAHRRFEIKGELNGITVVD 331

Query: 344 ESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + Y  +P  +KAA++         ++    PH   R I++  D  +              
Sbjct: 332 D-YAHHPTEIKAALNAAKNFPHNRIICIFQPHTYSRTISLFDDFAD-------------- 376

Query: 395 VLSLYNISHVWLSGFHVLALKDA------------LPRSIHVHYSETMDGLFLFIQSSLV 442
             S +N   + L+  +    KD               + ++     + + +  F++  L 
Sbjct: 377 --SFFNADTLILADIYAAREKDTGIVSSDMLGNKIREKGVNCKNLHSFEAITEFLRQELK 434

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
           +GD+++   +     YR+  + LE
Sbjct: 435 EGDLLITVGAGDV--YRIGEMFLE 456


>gi|254426827|ref|ZP_05040534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
 gi|196192996|gb|EDX87955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
          Length = 441

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 47/316 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V+  +  S  +++  V    +V+G +   A AA       ++AITGS  K+T   +L 
Sbjct: 70  LIVSPGVAVSTPAIAEQVVDGKEVIGDIELFARAA----SEPLVAITGSNAKSTVTTLLG 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRP 184
                 +   AC    N  IG  L +A + +  D     + EL    L      T+ +  
Sbjct: 126 ------QVADAC--GMNPGIGGNLGVAALELLDDQARLYVLELSSFQL----ETTYSLSA 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A I  ++  HL  ++   +  +AK  +++G +       N DD     L  +  A   
Sbjct: 174 EVATILNVSQDHLDRYASFADYLAAKQRVYDGCQ---VAVWNRDD-----LATRPPATVA 225

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGI 302
           + I SFG    AD++L      SE    ++  +G+ +  +      G+H A N+L  L I
Sbjct: 226 RQI-SFGAHPEADYRLD-----SENG--QLLCRGEPLLSLSELALTGHHNAMNILSVLAI 277

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVL 360
              L+ + D A+  +  F      G  +RC L    G     ++S   N   + A ++ L
Sbjct: 278 SDALSLNRDKALATVKAFT-----GLPHRCQLVAEAGGVRWFNDSKATN---VGATLAAL 329

Query: 361 SQISPHGEGRRIAVLG 376
           + I    EG+ I V G
Sbjct: 330 TGIGESIEGKVILVAG 345


>gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 481

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 11/118 (9%)

Query: 9   DLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL + I  QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 15  DLFREIIDQGHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLSAISQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
             V   D       + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT+
Sbjct: 73  WYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTS 125


>gi|210616990|ref|ZP_03291325.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
 gi|210149513|gb|EEA80522.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 156/389 (40%), Gaps = 59/389 (15%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140
           ++P+    ++LG L        + +  T IA++G+ GKTTT  ML+ + L+  K     +
Sbjct: 93  NLPMLSRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSMLSHVLLAGEKDPTISV 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G     IG  + +    V V     E   S L       H   P I +I  +   H+  F
Sbjct: 145 GGILKAIGGNIRVGSSDVFVTEAC-EYTNSFL-------HFF-PKIGIILNVEEDHMDFF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             I++I ++  +    L   G + +N +    E + + +  L  K I ++ + + AD+  
Sbjct: 196 KDIDDIRNSFHQFAALLPADGALVINQN---IEGINSITDGLDCKII-TYSERQPADY-- 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADV 310
                 SE  + E+     S +++ HG           G H   N L  + +   L   +
Sbjct: 250 ----SASEIRFDEI--GNASFDLLRHGEYVDRITLAVAGNHNVSNALAVIAVCEQLEIPL 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLS 361
           D   K +  F    G  +R++    +   T+ID+ Y  +P  ++A ++         +  
Sbjct: 304 DIIKKGILSF---TGTDRRFQYKGERDGVTIIDD-YAHHPTEIRATLTSAQNYPHKDIWC 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
              PH   R  A   +  E   LS + H+ LA++ +      + +S     AL + +   
Sbjct: 360 IFQPHTYTRTKAFFDEFAEA--LSLADHVVLADIYAARETDTLGMSS---AALTEKIKEL 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +Y  + + +  F+    + GD+++ 
Sbjct: 415 GTDAYYFPSFEEIENFVSEKCIHGDLLIT 443


>gi|157964491|ref|YP_001499315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           massiliae MTU5]
 gi|157844267|gb|ABV84768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           massiliae MTU5]
          Length = 498

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  +++  L+S    Y   G    +IGV    A+     D  + EL   
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAG----NIGVSALQAK--ASKDGYVLELSSF 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  ++  T      IAV+  I P HL     +    +AK++IF+ +++     +N D+ 
Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHQDMTCYIAAKSKIFDRMDQESYAVINIDND 216

Query: 231 F 231
           +
Sbjct: 217 Y 217


>gi|331645201|ref|ZP_08346312.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
 gi|330909938|gb|EGH38448.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli AA86]
 gi|331045958|gb|EGI18077.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|260853304|ref|YP_003227195.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257751953|dbj|BAI23455.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|323157842|gb|EFZ43945.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EPECa14]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|218290680|ref|ZP_03494771.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239345|gb|EED06543.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 881

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 52/304 (17%)

Query: 107 KATIIAITGSVGKTTTKEML---------TIALSSIKKTY-----ACIGSYNNHIGVPLT 152
           +  I++ITG+ GKTTT  ++         T+ L++    Y      C G     +   L 
Sbjct: 479 RIPIVSITGTNGKTTTARLVAHGFAVAGKTVGLTTTGGVYIGGECVCRGDTTGPMSARLV 538

Query: 153 LARMPVDVDF------GIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           L+   V+V        GI   G+++ + ++  +T+L   H+                I++
Sbjct: 539 LSHPRVEVAVLETARGGIVRGGLAYDVADVGVITNLSLDHVG---------QDGLDSIDD 589

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI------------KTIYSFGKS 253
           IA  KA + E +   G + LN DD     L  +  A  +            + + + G +
Sbjct: 590 IAFVKALVGECVRDDGAVVLNADDPRVLALAPRFRAPLVLVSQVPNNPHVARHVQAGGTA 649

Query: 254 KNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             A D  L +W+  +++  + V      + +   G+     +N  +    +        T
Sbjct: 650 VVASDGVLYEWQGGAQRPIIGV----AQIPICLGGLARFHVENAALAAAAMRAAGLPRST 705

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             KAL+ F P++  G+     L  G   ++D  Y  NPA  +     L  ++     RR+
Sbjct: 706 VAKALATFLPEQNTGRLEMYVLPNGARVVLD--YGHNPAGFREVGRWLQALACR---RRV 760

Query: 373 AVLG 376
            V+G
Sbjct: 761 GVVG 764


>gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
 gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
          Length = 470

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 11/137 (8%)

Query: 84  PVFGVDDVLGA--LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           P+F   D  G      + +A RLR    A  +A+TG+ GKTTT +ML   L +     A 
Sbjct: 83  PLFAAADRAGVPVWGDVELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILEAAGLRTAA 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +G    +IGV L  A +  +  + +  + +S   ++ +   L R H A +  +AP HL  
Sbjct: 143 VG----NIGVSLLDAVLG-EERYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDHLDW 195

Query: 200 FSGIEEIASAKAEIFEG 216
              +E  A  K  ++EG
Sbjct: 196 HGSMEAYARDKGRVYEG 212


>gi|239940572|ref|ZP_04692509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 15998]
 gi|291444007|ref|ZP_06583397.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346954|gb|EFE73858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 472

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK-----ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +PV+G          + +A RLR       A  +A+TG+ GKTTT  ML   L +     
Sbjct: 92  VPVWG---------DVELAWRLRGDNGKKAAPWLAVTGTNGKTTTVRMLASILEAAGLRT 142

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A +G    +IGV L  A +  + ++ +  + +S   ++ +   L R H A +  +AP HL
Sbjct: 143 AAVG----NIGVSLLDAVLG-ETEYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDHL 195

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
                +E  A+ K  ++EG      ++   D +  +L++      G + I
Sbjct: 196 DWHGSMEAYAADKGRVYEG-NTVACVYNVADPATEDLVREADVEEGCRAI 244


>gi|210634199|ref|ZP_03298039.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
 gi|210158889|gb|EEA89860.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
          Length = 474

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 27/256 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           T +A  G+ GKTTT  M+   L  +    +  IG      G          D ++ + E 
Sbjct: 118 TTVAAAGTHGKTTTSSMVATMLDRMGLDPSFLIGGVVEGYGTNGKNG----DGEYFVVEA 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   +  FL   + PH+ ++T +   H+ ++S +EEI          + + GT+ +  
Sbjct: 174 DES---DSSFL--YLNPHVVIVTNVEADHMDHYSSLEEIEDTFCAFMNLVGEDGTVIVCG 228

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283
           +D    EL ++   A     + ++G+ +   F +      S  ++     V L   ++  
Sbjct: 229 EDPHLVELARSTGRA-----VLTYGEGEG--FDVSCAPMASSHTFGTDFSVTLPDGAVRT 281

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V   +  G H   N    L    +L  D + A +ALS F   EG  +R+          L
Sbjct: 282 VAIKNNPGRHNMLNATAALASAYVLGLDTEDAARALSTF---EGARRRFTHVGETRGVML 338

Query: 342 IDESYNANPASMKAAI 357
           +D+ Y  +P  +KA +
Sbjct: 339 VDD-YGHHPTEVKATL 353


>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           tasmaniensis Et1/99]
 gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 27/257 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + +          +IG+P LTL + P  +   +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMARAAGWQVGVGGNIGLPALTLLQQPAQLY--V 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T  ++   A +  +   H+  +  G+++  +AK  I+   E     
Sbjct: 157 LELSSFQLET----TSSLKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIY---ENATAC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    ++            SFG    ADF      +    +W+ VQ +      
Sbjct: 210 VVNADDAMTMPIRGAD-----ARCVSFG----ADFGDYHLTRQQGSTWLRVQGEKVLNTD 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H +G H   N L  L +   +     T++KAL+ F+   G   R++          I+
Sbjct: 261 EMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFN---GLPHRFQLVHEHNGVRWIN 317

Query: 344 ESYNANPASMKAAISVL 360
           +S   N  S +AA++ L
Sbjct: 318 DSKATNVGSTEAALNGL 334


>gi|283783875|ref|YP_003363740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
 gi|282947329|emb|CBG86874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 114/260 (43%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D    ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDAGRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   T+ ++   A I  +   H+  +  G+++  +AK  ++   E      
Sbjct: 156 VLELSSF-QLE-TTYSLQAEAATILNVTEDHMDRYPFGLQQYRAAKLRVY---ENASVCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ARCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 499

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 95/224 (42%), Gaps = 25/224 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR   P   F AI G   DGH F+  AV +GA  V++   +    G      +
Sbjct: 23  VTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRGAAAVLLQQKVPVPEGV----AW 78

Query: 87  GVDDVLGALNKLAVAA-RLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V  V      LA+AA R   +      ++ +TG+ GKTTT  ++     + +     IG
Sbjct: 79  AV--VPDTRKGLALAASRFYGEPGRALRLVGVTGTNGKTTTTHLIAALFRARRPGVGLIG 136

Query: 142 SYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFL-------THLVRPH-----IA 187
           + +N IG  +   R   P  +D       M+  G    +         L R H      A
Sbjct: 137 TIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDVVLEVSSHALRLSRVHGLSFEAA 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           V T +   HL   +  E+  +AKA++F GL +     +N DD +
Sbjct: 197 VFTNLTQDHLDFHTDFEDYFAAKAQLFTGLGEEAAAIINRDDPY 240


>gi|319946445|ref|ZP_08020682.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
 gi|319747413|gb|EFV99669.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
          Length = 444

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 41/297 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  +L+  LS+I  T   IG             R      + +FE   S
Sbjct: 106 MGVAGAHGKTSTTGILSHVLSNITDTSYLIGD---------GTGRGSKGAKYFVFE---S 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E  F+ +   P  ++IT I   H   F+G+E++ +A  +  + + K   +F+  +D 
Sbjct: 154 DEYERHFMPY--HPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQISK--ALFIYGEDP 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
             EL +  ++A     IY +G + +  DF      + +  S   V  +G+ +        
Sbjct: 210 --ELRRITANA----PIYYYGFEEEGNDFVASDLLRSTTGSTFTVHFRGEDLGQFQIPSF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++ I   D+D   + L  F    G  +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVVGLLYIAGFDLDLVREHLKTF---GGVKRRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +P  + A +    Q            PH   R IA+L +  +   L+Q+  + LA++
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFADA--LNQADAVYLAQI 373


>gi|307265084|ref|ZP_07546644.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919882|gb|EFN50096.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 464

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L+IP+     +LG +        ++     IA++GS GKTTT  ++++ L  +      
Sbjct: 89  ELNIPIIDRATLLGLI--------MKKYKYGIAVSGSHGKTTTTSLISVILDGMGFD--- 137

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVIT 190
                     P  L    VDV  G   +G S      F+T             P+IAVI 
Sbjct: 138 ----------PTVLVGGEVDVLGGNVRVGNSEY----FVTEACEYTDSFLKFYPYIAVIL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL  F  I+ I  +  +    +   G +    DD+    +    + L  K I ++
Sbjct: 184 NVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYV---VNGLN-KNIVTY 239

Query: 251 GKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
           G  +++D++ +      K C   +  +V  + + M      I G H   N L  L +  +
Sbjct: 240 GIYQDSDWKAKNISFDDKGC---AIFDVYYKEEYMGNFKLSIPGKHNIYNALAALAVSHL 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------- 358
           +  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA +        
Sbjct: 297 VGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKATLEAAKNYPH 352

Query: 359 --VLSQISPHGEGRRIAVLGDMCE 380
             ++    PH   R  ++L D  E
Sbjct: 353 KRIICIFQPHTYSRTKSLLNDFAE 376


>gi|218698514|ref|YP_002406143.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI39]
 gi|218703351|ref|YP_002410870.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UMN026]
 gi|293403163|ref|ZP_06647260.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|293408182|ref|ZP_06652022.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298378693|ref|ZP_06988577.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300900878|ref|ZP_07119015.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|301026101|ref|ZP_07189576.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331661465|ref|ZP_08362389.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331671610|ref|ZP_08372408.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
 gi|226711865|sp|B7NHJ7|MURC_ECO7I RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711867|sp|B7N7W4|MURC_ECOLU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218368500|emb|CAR16235.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI39]
 gi|218430448|emb|CAR11314.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli UMN026]
 gi|291430078|gb|EFF03092.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|291472433|gb|EFF14915.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298281027|gb|EFI22528.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300355642|gb|EFJ71512.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|300395672|gb|EFJ79210.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331061380|gb|EGI33343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331071455|gb|EGI42812.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|172059550|ref|YP_001807202.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           MC40-6]
 gi|229486473|sp|B1YSS5|MURC_BURA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171992067|gb|ACB62986.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 26/269 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D   +AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRI 372
           + Y  +P  M A ++      P   GRR+
Sbjct: 333 D-YGHHPVEMAATVAAARGAFP---GRRL 357


>gi|117622377|ref|YP_851290.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
 gi|166224687|sp|A1A7D6|MURC_ECOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115511501|gb|ABI99575.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|2177094|gb|AAB60787.1| UDP-MurNAc:L-alanine ligase [Escherichia coli]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|291277331|ref|YP_003517103.1| UDP-N-acetylmuramate--alanine ligase [Helicobacter mustelae 12198]
 gi|290964525|emb|CBG40378.1| UDP-N-acetylmuramate--alanine ligase [Helicobacter mustelae 12198]
          Length = 440

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 32/188 (17%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
             D I+H+      ++  N   +    S +IP+    D L    KL +A +      +I+
Sbjct: 65  NQDLIIHS-----AIIPPNNIEILEAQSKNIPILSRKDAL----KLILAQK-----KVIS 110

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMS 170
           + G+ GK+TT  ML    SSI   Y A IG+ +   G     + +    + GI FE   S
Sbjct: 111 VCGAHGKSTTSAML----SSIFPHYGAIIGAVSKEFG-----SNVRESANEGIIFEADES 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +  FL     PH A++T     H+ ++    E+       F GL KT   F+N DD 
Sbjct: 162 ---DKSFLNS--NPHYAIVTNAELEHMQSYDYSIELFHQAYRDFLGLAKTA--FINSDDP 214

Query: 231 FFELLKAK 238
           F   LK K
Sbjct: 215 FLATLKHK 222


>gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
 gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
          Length = 481

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH          + IS DSR +     FFA KG  +   +++L A+ +G G  V   D 
Sbjct: 23  QGHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFK-KEYLLSAITQGLGWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|239987056|ref|ZP_04707720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 11379]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK-----ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +PV+G          + +A RLR       A  +A+TG+ GKTTT  ML   L +     
Sbjct: 95  VPVWG---------DVELAWRLRGDNGKKAAPWLAVTGTNGKTTTVRMLASILEAAGLRT 145

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A +G    +IGV L  A +  + ++ +  + +S   ++ +   L R H A +  +AP HL
Sbjct: 146 AAVG----NIGVSLLDAVLG-ETEYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDHL 198

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
                +E  A+ K  ++EG      ++   D +  +L++      G + I
Sbjct: 199 DWHGSMEAYAADKGRVYEG-NTVACVYNVADPATEDLVREADVEEGCRAI 247


>gi|157147485|ref|YP_001454804.1| UDP-N-acetylmuramate--L-alanine ligase [Citrobacter koseri ATCC
           BAA-895]
 gi|166222972|sp|A8ALK5|MURC_CITK8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157084690|gb|ABV14368.1| hypothetical protein CKO_03284 [Citrobacter koseri ATCC BAA-895]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S +AD ++ +++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSDDADVRVEEYQQVGPQGHFTLLR 276

Query: 277 QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K +M+V  +  G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 277 QDKPAMQVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
 gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 145/379 (38%), Gaps = 50/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+       +   L +P  
Sbjct: 18  VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEP---PAPDGLPVPAD 74

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 75  AI-AVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 134 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 189

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +AV T +   HL     + +  +AKA++F   GL+      +N DD F   L A    
Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDGFGRTLFAALD- 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIGYHMAQNML 297
                + + G S  A    R   Q  +         + +QG+   V    +G     N+L
Sbjct: 246 ---PALRAIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLL 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G +  +          L    P  GR  R   A       L+   Y   P +++ A+
Sbjct: 303 AVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 359

Query: 358 SVLSQISPHGEGRRIAVLG 376
           S L     H + R I V G
Sbjct: 360 SSLRS---HAQDRLICVFG 375


>gi|218249332|ref|YP_002375315.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226321282|ref|ZP_03796810.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
 gi|218164520|gb|ACK74581.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226233314|gb|EEH32065.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
          Length = 468

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +   
Sbjct: 162 -----GISNIFIVETCEYK--NHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
 gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
          Length = 441

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 136/355 (38%), Gaps = 38/355 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A IIAITGS  K T   ++   +       A  G+    IG P L L   PV  DF +
Sbjct: 98  ARAPIIAITGSNAKGTVTSLIGKMIQRAHLNVAVGGN----IGKPALDLLNEPVP-DFYV 152

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L      T+ +RP +A I  I+P HL     +    +AK  I+   +    I 
Sbjct: 153 LEISSFQLET----TYSLRPKLASILNISPDHLDRHKTLTAYINAKQRIYHQAD----IA 204

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           L   D      +A++     K I SFG +         +   S Q     +   + + V 
Sbjct: 205 LWNRDDLNTFPQART-----KKIISFGLTTTTPHAHEFYLYNSHQKNFIAKGHDRLLPVD 259

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTL 341
              I G H   N +  L I   +       + AL  F     +G  +RC   + F   T 
Sbjct: 260 ALFIQGRHNWANAIAALTIGHAIGLPTKAMLTALCEF-----KGLPHRCQWVKEFKGVTW 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N   + A ++ L+ + P   G+ I + G + +  + S      L      + +
Sbjct: 315 YNDSKATN---VGATLAALNGLGPSISGKIILIAGGLSKNADFS------LLHNPVKHYV 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             + L G     LK+ L +S  +     +         +   GD+V++  S +C 
Sbjct: 366 KKIILIGRDAALLKNTLEKSTAIQTVSDLRHAVNLAHETARRGDIVLL--SPACA 418


>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
           391-98]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 37/267 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAEQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V D   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLIGITGTNGKTTTSHIIDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------VP--LTLAR-----MPVDVDFGIFELGMSHLGEIR 176
                  IG+ N  IG          P  LTL +     +  +V+  + E+    L   R
Sbjct: 126 HGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRMVEENVNSAVMEVSSHALDRGR 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDS 230
              H     +AV T +   HL     +EE   AK  +F  L       +     LN DD+
Sbjct: 186 V--HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAVLNNDDA 243

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNAD 257
             E     + A    T+ ++G   ++D
Sbjct: 244 ATEAYIRSTAA----TVVTYGIDTHSD 266


>gi|329737491|gb|EGG73744.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU045]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    +I
Sbjct: 255 FLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVS-NQ----VI 309

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            + Y  +P  + A I           V++   PH   R  A L +  E   LS++  + L
Sbjct: 310 VDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
 gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
          Length = 439

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 147/364 (40%), Gaps = 52/364 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYD----GHDFILHAVQKG--- 64
           QG  + I+  G      +D   +R I P+     +  P  D      +  L ++ +G   
Sbjct: 5   QGKKVVIIGLGLTGLACVDFFMARDIMPRVMDTRVSPPGLDTLPGSLECHLGSLHQGWLL 64

Query: 65  -AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A L+VV+  +  +  +LS       +++G +      A    +A I+AITGS GK+T  
Sbjct: 65  AADLIVVSPGVALATPALSAAADAGVEIVGDVELFCREA----QAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  +  + K          +IG+P L+L R   +    + EL    L      TH +
Sbjct: 119 --VTTLVGQMAKAAGWAVGIGGNIGLPALSLLRQ--ECQLYVLELSSFQLET----THSL 170

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R   A +  +   H+  +  G+++   AK  ++   E  G   +N DD+    ++     
Sbjct: 171 RTAAATMLNVTEDHMDRYPFGLQQYRVAKLRVY---ENAGVCVVNTDDTLTLPVRGTD-- 225

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQ----LQGKSMEVVHHGIGYHMAQNM 296
                  SFG     D+ L     C + ++W+ V+    L  + M++     G H   N 
Sbjct: 226 ---ARCVSFGVDV-GDYHL----NCQQGETWLRVRGEKVLNTREMKLT----GCHNYTNA 273

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +     +++KAL+ F    G   R++          I++S   N  S +AA
Sbjct: 274 LAALALADAVNIPRASSLKALTTF---TGLPHRFQWVWECNGVRWINDSKATNVGSTEAA 330

Query: 357 ISVL 360
           +  L
Sbjct: 331 LKGL 334


>gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
 gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
          Length = 483

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR + P   FFA KG  +   +F+  AV+KG    +   D       + IP   V+
Sbjct: 38  LSYDSRHVTPSSLFFA-KGAVFK-KEFLQGAVEKGLAFYIAEKDY-----EVGIPAILVN 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+A     + K  I+A TG+ GKTT
Sbjct: 91  DIKQAMSLIAMAFYDNPQDKLKILAFTGTKGKTT 124


>gi|299535411|ref|ZP_07048733.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus fusiformis
           ZC1]
 gi|298729172|gb|EFI69725.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus fusiformis
           ZC1]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 121/299 (40%), Gaps = 36/299 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IAITG+ GKT+T  ++   +   K T   IG                 + DF + E  
Sbjct: 102 TSIAITGAHGKTSTTGLMAHVVGGYKPTSYLIGD---------GTGAGHENADFFVMEA- 151

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  AV+T I   H   F+ IE++ SA   +   L+    I   
Sbjct: 152 ------CEYRRHFLAYNPDYAVMTNIDFDHPDYFANIEDVYSAFQSL--ALQVKKAIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + ++AK     +  +Y +G     DF+ R  ++ +E +  +V ++ +       
Sbjct: 204 GDDEQLQRIQAK-----VPVVY-YGFGAENDFEARNVEKTTEGTKFDVFVRNEFYSTFFI 257

Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            + G H   N L  + +        D   + L   H  +G  +R+    + G   LID+ 
Sbjct: 258 PLFGDHAVLNTLAVITLCEYEGISPDIIQERL---HTYKGVKRRF-TETDIGDNVLIDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           Y  +P  ++A I    Q  P  E   +A+          +Q+F  D A+ LSL + +++
Sbjct: 313 YAHHPTEIRATIQSARQKFP--ERELVAIF--QPHTFTRTQAFLQDFADSLSLADTAYL 367


>gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
 gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
          Length = 461

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    + +IAITGS GKTTT   L   L +     +  G+    +   + LA
Sbjct: 92  ISEIEFAYRYAGDSMMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                  + + EL    L  +    +  R HIA++  I P HL  +   +E  A AK  I
Sbjct: 152 PHA----YYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHKMELYARAKMRI 203

Query: 214 FEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSF-GKSKNA 256
            +  + T   F+++  DD    LLK      G +  +S  G S +A
Sbjct: 204 TQNQQPT-DYFISWIEDDWTQRLLKEPGMGAGRRIFFSTEGSSDDA 248


>gi|298245364|ref|ZP_06969170.1| protein of unknown function DUF1727 [Ktedonobacter racemifer DSM
           44963]
 gi|297552845|gb|EFH86710.1| protein of unknown function DUF1727 [Ktedonobacter racemifer DSM
           44963]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 23/156 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-- 163
           S A  I ITGS GKTTT  M T AL+S            N  G  L      V V+F   
Sbjct: 116 SSAKKIVITGSNGKTTTARM-TAALASSNGQRVS----QNRTGSNLLQGVTSVAVNFADI 170

Query: 164 ---------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                    +FE+     G I      ++P + +IT +    L  +  +  +A+A  ++ 
Sbjct: 171 FGRLDSDVLLFEIDE---GTIPAAVPEIQPDVVIITNLFRDQLDRYGEMYSVANALNKML 227

Query: 215 EGLEKTGTIFLNYDD----SFFELLKAKSHALGIKT 246
           E L +T TI LN +D    +F    KA+    G++T
Sbjct: 228 ENLPETSTILLNGNDPQVANFALNSKARRLYFGLET 263


>gi|289579389|ref|YP_003478016.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
 gi|289529102|gb|ADD03454.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
          Length = 464

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 156/385 (40%), Gaps = 65/385 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++GS GKTTT  ++++    +         Y+     P  L    VDV  G   +G S
Sbjct: 112 IAVSGSHGKTTTTSLISVIFDGM--------GYD-----PTVLVGGEVDVIGGNVRVGNS 158

Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                 F+T             P+IAVI  +   HL  F  I+ I  +  +    +   G
Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQ 277
            +    DD+    +    + L  K I ++G  +++D++ +      K C   +  +V  +
Sbjct: 215 YVVACKDDANTMYV---VNGLN-KNIVTYGIYEDSDWKAKNIRFDDKGC---AIFDVYYK 267

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + M      I G H   N L  L +  ++  D+  A   L+ F   +G  +R+      
Sbjct: 268 EEYMGNFKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIV 324

Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              T++D+ Y  +PA +KA +          ++    PH   R  A+L       E ++S
Sbjct: 325 DGITIVDD-YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKALL------NEFAES 377

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443
           F  D A+ + + +I         +++ KD +     +   V Y +  D +  ++  +   
Sbjct: 378 F--DNADKIIIADIYAAREKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKA 435

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
           GD+V+   + +   Y +  + L+++
Sbjct: 436 GDLVLTIGAGN--IYEVGEMFLKDY 458


>gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 102/266 (38%), Gaps = 47/266 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  ML  ALS+               G+  + A   V   FG      +
Sbjct: 105 VAVAGAHGKTTTSGMLAAALSA--------------AGMDPSFAVGGVVAGFGT----GA 146

Query: 171 HLGEIRFLTHLV----------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           HLG+ RF                P +A++T + P HL ++   E   +   E    +   
Sbjct: 147 HLGQGRFFVAEADESDGSFLNYTPRVALVTNVEPDHLDHYGSREAFEAVFDEFVTRITAD 206

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G + +  DD     L  +  A G + ++S+G   + +       Q  + S +E+   G S
Sbjct: 207 GALVVCADDPGASALGQRVLATG-RRVWSYGLDSSVE-----GAQHLQISEVELHASGSS 260

Query: 281 MEV--------VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V        VH  + G H   N    L +   L   +    +AL  F    G G+R+ 
Sbjct: 261 FLVSYGDETVAVHLNVSGLHNVLNATGALAVALDLGISLSVMAEALKAF---TGTGRRFE 317

Query: 332 CALNQGFFTLIDESYNANPASMKAAI 357
                    L D+ Y  +P+ + AA+
Sbjct: 318 FKGEVAGKRLFDD-YAHHPSEVAAAL 342


>gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
 gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
          Length = 487

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 48/245 (19%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA---------------GLVVVN 71
           + GI  DSR+ +    F A+ G  + G DF+  AV +GA               GLVVV 
Sbjct: 24  ITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASGIIADEEMNLPDHIGLVVV- 82

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           +D+ A  G +++  F  D               + +   +A+TG+ GKT+T ++L   L 
Sbjct: 83  SDVRAISGIVAMRFFETD---------------KQELRTLAVTGTNGKTSTVQLLAQLLG 127

Query: 132 SIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH---- 185
            + +  A +G+    +  G   +    P  V+   F L  +    +R+       H    
Sbjct: 128 ELDQAAATVGTLGFQLPTGFSPSSNTTPDVVEIHRF-LASAAAQNVRWAALEASSHGLVQ 186

Query: 186 ---------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                     A IT I   HL     + E  +AKA+I   L     + L+ D+     L+
Sbjct: 187 HRLTGLNITTAAITNITQDHLDYHGTMTEYIAAKAQIL-ALSGLRAVVLDLDNPEVRALR 245

Query: 237 AKSHA 241
            +  A
Sbjct: 246 PQVPA 250


>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
 gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE 166
           I+A+TGS GKTTT  +++  L +  +     G    +IG PL+   L+  P DV   + E
Sbjct: 117 IVAVTGSNGKTTTVMLISALLEAAGRRVFTGG----NIGTPLSDHVLSEEPADVV--VLE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +    L     LT   RP +AV+   A  HL   + ++E   AK  IF
Sbjct: 171 VSSFQLQ----LTKTFRPKVAVLLNFAANHLDWHADLDEYLDAKLRIF 214


>gi|311280932|ref|YP_003943163.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
 gi|308750127|gb|ADO49879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 116/260 (44%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A ++AITGS GK+T    +T  +  + K          +IG+P   A M +DV   ++
Sbjct: 103 AQAPVVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDVSRELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 156 VLELSSF-QLETTSSL-QAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGINM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTFG---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 48/356 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDDECEL 154

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           + L +S   ++   + L +   A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 155 YVLELSSF-QLETTSSL-QAVTATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  + +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALARVALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA++ L     H +G    +LG              D + +    
Sbjct: 314 RWINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYL 360

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           N  +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 361 NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B
           str. Eklund 17B]
 gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 460

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 108/274 (39%), Gaps = 48/274 (17%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI+G+ GKTT   ML+ I L +                 P  L    +D+  G F +G 
Sbjct: 114 VAISGAHGKTTCTSMLSNITLKANLD--------------PTILVGGELDIIGGNFRIGS 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ VI  I   HL  +  I+EI     +  + +   
Sbjct: 160 SDY----FITEACEYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPND 215

Query: 221 GTIFLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEV 274
           G +     DS  +  L KAK + L     Y F   +NAD   R      K C+  S+   
Sbjct: 216 GYLIGYVGDSRVKEILFKAKCNTLS----YGF---ENADVTARNITFNEKGCA--SFDVY 266

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +   K  ++     G H   N L ++ +  I   + D  I  LS     +G  KR+    
Sbjct: 267 KHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLS---ECKGAHKRFEYKG 323

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                T+ID+ Y  +P  +KA ++   +I PH +
Sbjct: 324 EVNGVTVIDD-YAHHPVEIKATLNTSKKI-PHNK 355


>gi|123969098|ref|YP_001009956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. AS9601]
 gi|123199208|gb|ABM70849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 28/217 (12%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +N   VA  +      I ITG+ GKTT   +L+  L            +  +IG P
Sbjct: 104 VIGEIN---VAWEILKDTNWIGITGTNGKTTVTHLLSHILCDT----GLYAPFAGNIGTP 156

Query: 151 L---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           L     ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   
Sbjct: 157 LCKYAYSKKHEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYF 212

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQ 265
           + K  +   LEK+     NYDD       + S + G+    S  KS   + D+ +     
Sbjct: 213 NIKKSL---LEKSDFRIYNYDDKNLRNYYS-SLSRGVWITTSLDKSNFIHCDYWI----- 263

Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301
             +Q+++ V+   K  ++ H  + G H  QN+L+ + 
Sbjct: 264 -DDQAYI-VERGKKLFKLEHFSLKGMHNLQNLLLVIA 298


>gi|270263957|ref|ZP_06192225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
 gi|270042150|gb|EFA15246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
          Length = 439

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 149/366 (40%), Gaps = 56/366 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++        
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFMARGVTPRVMDTRISPP---GLDKLPESVERHLGDLNLD 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  M  +  +LS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLLAADLIVASPGMALAHPALSAAADAGVEIIGDVELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T    +T  +  + K          +IG+P L+L R   +    + EL    L      T
Sbjct: 118 T----VTTLVGEMAKAAGWAVGVGGNIGLPALSLLRQ--ECQLYVLELSSFQLET----T 167

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++   A I  +   H+  +  G+++  +AK  ++   E      +N DD+    ++  
Sbjct: 168 FSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRVY---ENAALCVVNADDALTMPVRGA 224

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
                 +   SFG +   D+ L + +    ++W+ V+    L  + M++     G H   
Sbjct: 225 D-----QRCISFG-ADVGDYHLNRQQG---ETWLRVRGEKILNTREMKLT----GRHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +++KAL+ F    G   R++ A        I++S   N  S +
Sbjct: 272 NALAALALADAVNIPRASSLKALTTF---TGLAHRFQLAWEHNGVRWINDSKATNVGSTE 328

Query: 355 AAISVL 360
           AA++ L
Sbjct: 329 AALNGL 334


>gi|326795772|ref|YP_004313592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546536|gb|ADZ91756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
          Length = 449

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 42/278 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  IAITGS  K+T   ++   L SI K  A I   N  IG P  L  +  + D+ + EL
Sbjct: 109 APFIAITGSNAKSTVTTLVEYLLKSIGK--AAIAGGN--IGRP-ALDTLSQEADYYVLEL 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      TH ++  +A +  ++  H+  +  +     AK  I+ G +   +   N 
Sbjct: 164 SSFQLET----THALKADVACMLNVSEDHMDRYDDLYSYQRAKQRIYRGCK---SAVCNK 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D     L ++   +     ++ G     +F L    +     W+      K ++ ++H 
Sbjct: 217 QDILTAPLLSQDTPV---RAFTTGSPDLKEFGLLPDDK---GVWLS-----KGVKPLYHS 265

Query: 288 -----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339
                 G H   N+L  L I+ +L  D++    A  ++   E +G  +RC   A+  G  
Sbjct: 266 SEIALKGTHNLANVLAALSILDLLGVDIELPAVAQGLY---EFKGLPHRCETVAVVNG-V 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPH-------GEGR 370
           T I++S   N  +  AA++ L  +          GEG+
Sbjct: 322 TYINDSKGTNVGATLAALNGLGDLKRQNIILIAGGEGK 359


>gi|270263960|ref|ZP_06192228.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042153|gb|EFA15249.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVVRELLPR---VG-RHITTYGFSEDADVRIESYRQVGPQGHFTLSR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  M V  +  G H A N    + + +    D +  ++AL+ F   +G G+R+
Sbjct: 277 QDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIDDEDILRALAGF---QGTGRRF 328


>gi|237739356|ref|ZP_04569837.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422964|gb|EEO38011.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 463

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 137/331 (41%), Gaps = 46/331 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KGA  V+ +T +  +    +   +  ++ +  L +  + A+L ++ T 
Sbjct: 50  YNEHD---EENVKGADYVIASTAIKETNPEYA---YAKENGIKILKRGELLAKLLNRETG 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  +     T    G     I   +     P   ++ I E   S
Sbjct: 104 IAIAGTHGKTTTSSMLSAVMLKKDPTIVVGG-----ILPEIKSNARPGKSEYFIAEADES 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              +  FL   + P  +VIT I   HL     ++ I  +  E     +K   I +   N 
Sbjct: 159 ---DNSFL--FMNPEYSVITNIDADHLDVHGNLDNIKKSFIEFILHTQKESIICMDSKNL 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGK-SME 282
            D+  +L + KS      T YS  K +NAD   +  +    ++  EV    +L+G+ S+ 
Sbjct: 214 MDAILKLPEGKS-----VTTYSI-KDENADIYAKNIRIVDRKTIFEVYVNKELKGEFSLN 267

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----GF 338
           +     G H  QN L  + +      + D   +AL+ F   +G  +RY    +Q    G+
Sbjct: 268 IP----GEHNIQNSLPVIYLALKFGLNKDEIQEALNQF---KGSKRRYDVLYDQELENGY 320

Query: 339 FT-----LIDESYNANPASMKAAISVLSQIS 364
            +      I + Y  +P  +KA +  +  + 
Sbjct: 321 GSKTKRVRIVDDYAHHPTEIKATLKAIKSVD 351


>gi|255659952|ref|ZP_05405361.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
 gi|260847826|gb|EEX67833.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 162/391 (41%), Gaps = 46/391 (11%)

Query: 80  SLSIPVFGVDDVLGA-------LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           S +IP F   +VL A       L++  + A L ++   IA+ G+ GKTTT  ML +AL+ 
Sbjct: 78  STAIP-FDNPEVLAAKDLGITKLHRSDINAALVNEYKGIAVAGAHGKTTTTSMLGVALTH 136

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              + + +        V   +  +  + + G  +  +S   E       + PHIAV+T +
Sbjct: 137 AGVSPSVV--------VGGEVPDLGTNAELGTSDYLVSEADESDGSFLKLHPHIAVVTNV 188

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+ ++  +E I  A  +  + ++K TG   + +D+   E L+  +  L  K I ++ 
Sbjct: 189 EDDHMDHYGTMENIIKAFTQFIQNVDKETGYAVICFDN---ENLRNMAKNLDRKYI-TYA 244

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG-IVSILTADV 310
               AD++ +           +V   G+  E+ H  +      N+L  +  IV+ L+  V
Sbjct: 245 IDHEADYRAKNITHSGTGISFDV-FHGEE-ELGHVDLNIPGRHNVLDAMACIVTGLSIGV 302

Query: 311 --DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +     L+ FH   G  +R++         ++D+ Y  +P  + A +    + +P   
Sbjct: 303 SFEKMASGLAAFH---GAKRRFQTKGRVNGVWIVDD-YAHHPTEIAATLKAAKETNPK-- 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDL------AEVLSL---YNISHVWLSGFHVLALKDALP 419
            R I V          +Q  H +       A+VL L   Y      + G     + D + 
Sbjct: 357 -RLICVF--QPHRYSRTQLLHEEFGKAFVSADVLVLTDVYAAGEAPIPGISGQTIVDEVQ 413

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVV 448
           R    HV Y    + L  +++  +  GD+V+
Sbjct: 414 RQSGQHVVYEPAREKLAAYLKDFVQPGDLVI 444


>gi|226328326|ref|ZP_03803844.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
 gi|225203059|gb|EEG85413.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
          Length = 487

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 173/435 (39%), Gaps = 83/435 (19%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VVV+T + A    +       IPV    ++L  L       R R     +AI G+
Sbjct: 77  RGASVVVVSTAISAENPEIIAAREARIPVIRRAEMLAEL------MRYRHG---VAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       I   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 128 HGKTTTTAM-------ISNIYAQAGL-------------DPTFVNGGLVKSAGTHARLGC 167

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +AV+T I   H+  + G  + +          L   G 
Sbjct: 168 SRYLIAEADESDASFLHL-QPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGR 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
             +  DD     +  K   +G + I ++G S++AD ++  ++Q   Q +  +  +G   +
Sbjct: 227 AVMCLDDDVIRSIIPK---VG-RYITTYGFSEDADVRITHYEQKGAQGFFTISREGMPDL 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335
           +VV +  G H A N    + + +      +  + AL  F   +G G+R+    N      
Sbjct: 283 QVVLNAPGRHNALNATAAVAVATEEGIADEHILAALLSF---QGTGRRFDFLGNYGLEHV 339

Query: 336 ---QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +G   L+D+ Y  +P  + A I       P    +R+ ++         ++  + D 
Sbjct: 340 NGQEGEVMLVDD-YGHHPTEVDATIKAARAGWPD---KRLVMIFQPHRYTR-TRDLYEDF 394

Query: 393 AEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSL 441
           A VL+  +I   + V+ +G   +A  D+      +     +D +++         +   L
Sbjct: 395 ATVLNQVDILLLTDVYSAGEAPIAGADSRSLCRTIRQRGKLDPIWVSDVSNISSILAGVL 454

Query: 442 VDGDVVVVKSSNSCG 456
            D D+V+V+ + + G
Sbjct: 455 TDNDLVLVQGAGNIG 469


>gi|323341728|ref|ZP_08081961.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464153|gb|EFY09346.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 441

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 38/292 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++GS GKTTT  +L   LS  K+T   IG             R  +  D   F +   
Sbjct: 109 IAVSGSHGKTTTTTLLRDMLSYSKETGYLIGD-----------GRGDLQRDDEYFAVEAC 157

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                 FL +  +P IA++T     H+  F  +E+  SA  E  + +E    I +  DD 
Sbjct: 158 EFRR-HFLAY--KPKIAIMTNFEIDHVDYFKSVEDYLSAFKEFAKNVE--SLIVVWGDDP 212

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289
            ++ L     +  ++T +S+G  +    +  + ++ +  S  +V++ GK +   +  I G
Sbjct: 213 HYQDL-----SFDVET-WSYGFGEGNKIRATELEKTTTHSIFDVEVDGKRIHRFNLPIVG 266

Query: 290 YHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            HM  + L  + +     I   D++  ++  +        G + R  +  G   +  + Y
Sbjct: 267 DHMILDALAVIAVGLYEGIEPNDIEAGLQTFT--------GAKRRFVIETGKDNVYIDDY 318

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +P  ++  +       P    R+I  +     +G +   F  + A+ LSL
Sbjct: 319 AHHPTEVRVTLEAARTRYP---DRKIVGIFKPHRVGRV-YYFADEFADALSL 366


>gi|301169876|emb|CBW29480.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae 10810]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 135/350 (38%), Gaps = 57/350 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+   E      LN +D
Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAE---VGVLNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-----EVV 284
                              +FG+ +N   Q   + + S   W++ +  GK       EV+
Sbjct: 215 KL-----------------TFGEGENQAKQTVSFAENSADYWLKTE-NGKQYLMAKDEVI 256

Query: 285 HHG-----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D    AL  F   +G   R++ A      
Sbjct: 257 LPCEEVTLVGRHNYMNILAATALAQAVGINLDAIRTALCHF---KGLDHRFQLAHQANGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S  AA++ L     + EG+   +LG              D +E+  L 
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YVEGKLHLLLG--------GDGKGADFSELAELI 360

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N   +    F     + A   S   H  ETM+    F++  L  GD+V++
Sbjct: 361 NQPQIICYCFGRDGAQLA-KLSSQSHLFETMEQAIAFLRPILQSGDMVLL 409


>gi|295098595|emb|CBK87685.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 104/257 (40%), Gaps = 48/257 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+    SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAVAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S++AD ++  +KQ   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVEDYKQIGAQGHFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           Q K  + V  +  G H A N    + + +    D +  ++AL  F   +G G+R+     
Sbjct: 277 QDKDLLHVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRFDFL-- 331

Query: 336 QGFFTLIDESYNANPAS 352
            G F L  E  N  P S
Sbjct: 332 -GEFPL--EPVNGKPGS 345


>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
          Length = 497

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 145/359 (40%), Gaps = 33/359 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++IDSR+  P   F  IKG + DGH ++  A  +GA   +   +     G   I V 
Sbjct: 26  VSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAAQGAVAALTEQETEVPDGMTVIRVP 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              + +  L         R K  +I +TG+ GKTTT  +L   L+        IG+ N  
Sbjct: 86  STQEAVKTLAPWFYDWPAR-KMRMIGVTGTNGKTTTTNILRTLLTRTGHKVGLIGTINVM 144

Query: 147 IG--VPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHL--------VRPHIAVITTI 192
           IG  V  +    P  VD+   ++E+  +H     +   +H         +    AV+T I
Sbjct: 145 IGDEVRTSHNTTPDVVDLQKMLYEMVENHCDTCVMEVSSHALALDRVAGIEYDTAVLTNI 204

Query: 193 APAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-I 247
              HL     +E    AKA +F    EG +   T   N DD    ++  +     +KT I
Sbjct: 205 TQDHLDFHKTMENYREAKALLFTRLHEGTKPNKTAVFNSDDPSSAIIMPR-----VKTKI 259

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL--GIVSI 305
            ++GK K+ D     +   +    + +Q     M++  H  G     N++ ++   I   
Sbjct: 260 MTYGKGKDNDVYPLTFHVAASHMELNLQTPVGEMDLKLHITGEFNVYNVMGSICAAIAEG 319

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           LT   +  I+ L  F    GR +       Q F  ++D  Y   P  ++  +    QI+
Sbjct: 320 LTR--EDIIRGLDDFAGVPGRFQLIHAG--QPFTVVVD--YAHTPDGLENVLKTARQIT 372


>gi|261338915|ref|ZP_05966773.1| hypothetical protein ENTCAN_05113 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318740|gb|EFC57678.1| UDP-N-acetylmuramate--alanine ligase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 112/272 (41%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+    SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAVAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S++AD ++ ++KQ   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVEEYKQSGAQGHFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
           Q K  + V  +  G H A N    + + +    D +  ++AL  F   +G G+R+     
Sbjct: 277 QDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRFDFLGE 333

Query: 333 ----ALN--QGFFTLIDESYNANPASMKAAIS 358
               A+N   G   L+D+ Y  +P  + A I 
Sbjct: 334 FPLDAVNGKSGSAMLVDD-YGHHPTEVDATIK 364


>gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
 gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
          Length = 489

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 21/225 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           V  + +DSR I   +AF AIKG   DG  F+  A+  GA + +V+     +  S   I V
Sbjct: 21  VQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAIALVDEQCECTFASDKIIRV 80

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             +D  L  L+      +   +  +I +TG+ GK+T   M+           A IG+   
Sbjct: 81  AQLDKKLAQLSA-QFYGKPSEELALIGVTGTNGKSTITSMIAYLAQVCGSKSAVIGTLG- 138

Query: 146 HIGVPLTLARM----PVDVDF------------GIFELGMSHLGEIRFLTHLVRPHIAVI 189
             G P  L  +    P  V+              +  + +S  G ++      R   AV 
Sbjct: 139 -WGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAMEVSSHGLVQGRVACTRFKAAVF 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           + ++  HL     ++  A AK  +F       ++ +N DD   +L
Sbjct: 198 SNLSRDHLDYHGDMQSYADAKLMLFTECNPEISV-INQDDEVAKL 241


>gi|114321344|ref|YP_743027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227738|gb|ABI57537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 449

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 32/230 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           DSR   P++A    + P       G D  L A   GAG ++V+  +     SL  P    
Sbjct: 38  DSRDEPPEQATLQREWPQVPVRAGGFDAALLA---GAGEIIVSPGV-----SLREPALET 89

Query: 89  DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
               G   + ++ + AR  + A + AITGS GK+T   ++     +  +  A  G    +
Sbjct: 90  ARRAGVPLIGEIELFAR-HADAPVAAITGSNGKSTVTTLVGRMAEAAGRRVAVGG----N 144

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +G P L L       D  I EL    L      TH + P +A +  I+  H+     +  
Sbjct: 145 LGTPALALLDGETRPDAYILELSSFQL----ETTHSLAPRVAAVLNISADHMDRHGSVSA 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
            A  KA IF G    G   LN DD     +         +T+  F  + N
Sbjct: 201 YAGIKARIFHG---AGVQVLNLDDPVVAAMAQPG-----RTVLGFSLASN 242


>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
 gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 138/350 (39%), Gaps = 57/350 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+    K G   LN +D
Sbjct: 162 FQLE----TTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-----EVV 284
           S                  +FG+ +N   Q+  + +     W++ +  GK       EV+
Sbjct: 215 SL-----------------TFGEGENQAEQIVSFAENGADYWLKTE-NGKQYLMAKDEVI 256

Query: 285 HHG-----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D    AL  F   +G   R++ A      
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAVGINLDAIRTALRQF---KGLDHRFQLAHQANGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S  AA++ L     + EG+   +LG              D +E+  L 
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YVEGKLHLLLG--------GDGKGADFSELADLI 360

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N   +    F     + A   S   +  ETM+    F++ +L  GD+V++
Sbjct: 361 NQPQIICYCFGRDGAQLA-KLSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|170768600|ref|ZP_02903053.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
 gi|170122704|gb|EDS91635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDNAILRALESF---QGTGRRF 328


>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
 gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
          Length = 494

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 25/229 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D     G+L+
Sbjct: 18  PERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVAQADEATPDGTLT 77

Query: 83  ----IPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKT 136
               +PV  ++++   L+ LA     +  A+  +I +TG+ GKTTT ++L     ++ KT
Sbjct: 78  EMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKTTTTQLLAQWSQALGKT 137

Query: 137 YACIGSYNN----HIGVPLTLARMPVDV------------DFGIFELGMSHLGEIRFLTH 180
            A +G+  N    H+          VDV            DF   E+  SH G ++    
Sbjct: 138 SAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS-SH-GLVQHRVE 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            +    AV T ++  HL     +    +AK  +F    + G   +N DD
Sbjct: 196 ALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLF-AEHQVGQKIINADD 243


>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
 gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 116/281 (41%), Gaps = 38/281 (13%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           VLG L+    AA    KA +I ITGS GK+T   ++   L+      A  G+ +     P
Sbjct: 102 VLGDLDLFMEAA----KAPVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNLS-----P 152

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             LA +  D++  + E+    L      ++ +   +AV+  +   H+ +   +    +AK
Sbjct: 153 AALAILDDDIEVYVLEMSSFQLER----SNALGLDVAVVLNVTADHIDHHGSMAAYHAAK 208

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             IF    K   + +N DD   + L   +  +   T Y     ++A+F+L      ++  
Sbjct: 209 HRIF---RKAKAVVVNDDDVLTQPLVDSTVQV---TRYGAKAHRDAEFKL-----LNDAL 257

Query: 271 WMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           WM V    K ++V    + G H   N L+   I +      +     L  F      G  
Sbjct: 258 WMGVS---KIIDVSEMALRGRHNHLNALVACAIAACFDVAAEAMAATLRTFS-----GLP 309

Query: 330 YRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGE 368
           +RC + Q     T I++S   N   + AA++ +  I P+ +
Sbjct: 310 HRCRVVQTIAGVTYINDSKATN---VGAALAAIEGIGPNSD 347


>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
          Length = 496

 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 146/377 (38%), Gaps = 50/377 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F  I+G   DGH++I  A+  GA  ++V  ++        + V 
Sbjct: 24  IAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSGATALLVEKEVEV---DSEVTVI 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIGSY 143
             DD    L +++ AA     +  + + G  G         +  S +KK       IG+ 
Sbjct: 81  KTDDTRLGLAEVS-AAFYDYPSRELKVVGVTGTNGKTTNTYLIESILKKAGYKLGLIGTI 139

Query: 144 NNHIG---------------VPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPH 185
            N +                +   LA+M   +D G+  + M   SH  ++  +   +   
Sbjct: 140 KNKVSDQTFDSQRTTPEALDINKLLAQM---IDKGVTHVVMEVSSHALDLNRVAK-IDFD 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLN--YDDSFFELLKAKS 239
           +A+ T I   HL       E  +AK ++F  L    EKT  I ++  + D F E   +K 
Sbjct: 196 VAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKTAIINIDDPHSDEFLEAANSK- 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + ++G  K+A+ + +            ++     ME+  +  G     N L  
Sbjct: 255 -------VLTYGIEKDANLKAKDITISPTGVEFGLESTIGEMELDLNITGLFNVYNTLSA 307

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G    L  D+D     L       GR +    A  Q F  ++D  Y   P S++   ++
Sbjct: 308 IGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEA--QDFGVIVD--YAHTPDSLR---NI 360

Query: 360 LSQISPHGEGRRIAVLG 376
           L       EGR I V G
Sbjct: 361 LETAHDFVEGRIIVVFG 377


>gi|218547548|ref|YP_002381339.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|226711869|sp|B7LWF7|MURC_ESCF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218355089|emb|CAQ87696.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|325496027|gb|EGC93886.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii
           ECD227]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 27/259 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G + I ++G S++AD ++  ++Q   Q    +  Q K  + V  +  
Sbjct: 234 PVIRELLPR---VG-RQITTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALN-----QGFF 339
           G H A N    + + +    + D  ++AL  F   +G G+R+       LN      G  
Sbjct: 290 GRHNALNAAAAVAVATEEGIEDDVILRALESF---QGTGRRFDFLGEFPLNPVNGKSGTA 346

Query: 340 TLIDESYNANPASMKAAIS 358
            L+D+ Y  +P  + A I 
Sbjct: 347 MLVDD-YGHHPTEVDATIK 364


>gi|324112496|gb|EGC06473.1| UDP-N-acetylmuramate-alanine ligase [Escherichia fergusonii B253]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 27/259 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G + I ++G S++AD ++  ++Q   Q    +  Q K  + V  +  
Sbjct: 234 PVIRELLPR---VG-RQITTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALN-----QGFF 339
           G H A N    + + +    + D  ++AL  F   +G G+R+       LN      G  
Sbjct: 290 GRHNALNAAAAVAVATEEGIEDDVILRALESF---QGTGRRFDFLGEFPLNPVNSKSGTA 346

Query: 340 TLIDESYNANPASMKAAIS 358
            L+D+ Y  +P  + A I 
Sbjct: 347 MLVDD-YGHHPTEVDATIK 364


>gi|115372803|ref|ZP_01460109.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823487|ref|YP_003955845.1| UDP-n-acetylmuramate--l-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370284|gb|EAU69213.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396559|gb|ADO74018.1| UDP-N-acetylmuramate--L-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 119/293 (40%), Gaps = 35/293 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+     IPV    ++L  L +L  A         +A+ GS GKTTT  M+   L
Sbjct: 90  NPEVVAAR-QRKIPVIPRAEMLAELMRLKYA---------VAVAGSHGKTTTTSMVATVL 139

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           S+      A +G   N +     L +   M V+ D            +  FL   + P I
Sbjct: 140 SAAGLDPTAVVGGKVNVLDSNAKLGKSELMVVEAD----------ESDGSFLK--LHPSI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I P H+ ++  ++ + +A  E    +   G   L  D    + L  +      K 
Sbjct: 188 AVVTNIDPEHMDHYGTLDVLQTAFVEFCNRVPFYGLNVLCLDHPNVQALLPRLE----KR 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             ++G S  AD++L         +  +   + + + E     +G H A N L  + +   
Sbjct: 244 AVTYGSSHMADYRLEGVTLEGFTTRFQAFRRDEPLGEFRVRMVGAHNALNALAVIAVAEE 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +   +D    AL+ F    G  +R+      G  T++D+ Y  +P  + A ++
Sbjct: 304 MEIPLDMVRGALAEFG---GVQRRFTVRGEVGGVTVVDD-YGHHPTEVMATLA 352


>gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
          [Xenorhabdus bovienii SS-2004]
 gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
          [Xenorhabdus bovienii SS-2004]
          Length = 495

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P+  +  +++DSR  A  + F A+KG   DG ++I  A+ +G   V+         G++
Sbjct: 17 TPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGVAAVIAEAKGKTDNGTI 76

Query: 82 S----IPVFGVDDVLGALNKLA 99
               +PV  +DD+   L+KLA
Sbjct: 77 QAMHGVPVIYLDDLNNKLSKLA 98


>gi|256832304|ref|YP_003161031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685835|gb|ACV08728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
          Length = 502

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  +A+TG+ GKTTT E+L   L +     A +G+    +G P+        +D  + EL
Sbjct: 118 APWLAVTGTNGKTTTVELLATILHADGLRVATVGN----VGAPVIRQIQNPTIDVFVLEL 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T+ + P  + I  IA  H+      ++ AS KA IF    +   ++   
Sbjct: 174 SSFQL----HFTYSMEPLASAILNIAEDHVDWHGSFDQYASDKARIFTHTHR-ACVYSEG 228

Query: 228 DDSFFELLKAKSHALGIKTI 247
           DD    LL       G + I
Sbjct: 229 DDRVVRLLHEADVHPGARAI 248


>gi|120609516|ref|YP_969194.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
 gi|166222947|sp|A1TKD2|MURC_ACIAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120587980|gb|ABM31420.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 164/390 (42%), Gaps = 53/390 (13%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GK  TT+     +A + +  T+  IG   N  G    L +       G + + 
Sbjct: 108 IAIAGTHGKTTTTSLVTSVLAEAGLDPTF-VIGGRLNSAGANAKLGQ-------GEYIVV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P +AV+T I   H+  +      + SA  +    +   GT  L  
Sbjct: 160 EADESDASFLNLL--PVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAILCT 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------ 280
           D+ +  E+L   +       + S+G S++A  Q+R     ++   M  ++Q ++      
Sbjct: 218 DNPAIREILPDVTC-----PVTSYGFSEDA--QVRAVDVRADAGRMRFRVQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALN 335
           ++VV +  G H   N L  + +   L    +  ++AL+ F   +G G+R++      A  
Sbjct: 271 LDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQF---KGVGRRFQRYGELPAQG 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTLI E Y  +P  M A ++      P   GRR+ +             F  D  +V
Sbjct: 328 GGTFTLI-EDYGHHPVEMTATLAAARGAFP---GRRLVLAFQPHRYSRTRDCFE-DFVKV 382

Query: 396 LSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           +   +   ++ V+ +G   +   D  +L R++ V       + + +  L   I  +   G
Sbjct: 383 MGSADAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARGG 442

Query: 445 DVVVVKSSNSCGFY--RLINLLLEEFPAIQ 472
           DVV+   + S G    +++ +L  + PA+Q
Sbjct: 443 DVVLCMGAGSIGAVPAKVVEMLRTDVPAMQ 472


>gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
          Length = 522

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G + GI     + G++ DSR + P + F A+ G H  G  ++  AV  GA  V V TD  
Sbjct: 32  GSTAGI----LICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGA--VAVLTDPA 85

Query: 76  -ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSS 132
            AS+ +  +P+    D    L  +A A        ++   +TG+ GKTTT   L   L +
Sbjct: 86  GASLINREVPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRA 145

Query: 133 IKKTYACIGSYNNHIG 148
                  +G+    +G
Sbjct: 146 AGHRTGLLGTVMTRLG 161


>gi|218547545|ref|YP_002381336.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ATCC 35469]
 gi|218355086|emb|CAQ87693.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia
           fergusonii ATCC 35469]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 48/356 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA++ L     H +G    +LG   +  + S   H    + + LY
Sbjct: 314 RWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLAHYLNGDNVRLY 368

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 369 CFGR---DGAQLAALRPEV-----AEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|225549420|ref|ZP_03770392.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
 gi|225370048|gb|EEG99489.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
          Length = 468

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 50  HYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKLAVA 101
           +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++    
Sbjct: 57  YYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR---- 112

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV 160
                K   I I+GS GKTTT   L +  + +       +GS          +A      
Sbjct: 113 -----KYYSIGISGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA------ 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +    L+
Sbjct: 162 --GISNIFIVETCEYK--KHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYINNLK 217

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
           K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 218 KNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|325829942|ref|ZP_08163400.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
 gi|325488109|gb|EGC90546.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 103/268 (38%), Gaps = 43/268 (16%)

Query: 111 IAITGSVGKTTTKEML-----------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           +A+ G+ GKTTT  ML           T  +  I + Y      N H G   T A   V+
Sbjct: 110 LAVAGTHGKTTTSSMLASVLDGMGEDPTFLIGGIVRAYGT----NAHSG---TGAHYVVE 162

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D              +   HL  P   ++T I   HL ++  ++EI    A     +  
Sbjct: 163 ADE-----------SDKSFMHL-SPRAVLVTNIEADHLDHYRDLDEIYEKFASFIGSVPD 210

Query: 220 TGTIFL--NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            G + +    D++   +  A       K ++++G S   D ++  ++     S   ++L 
Sbjct: 211 DGGVVVACGEDEALVRVACASG-----KRLFTYGFSDACDVRIASYEPNGVGSDFTLELP 265

Query: 278 GKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             S+   H     G H   N    +G++  L  D   A +AL+ F    G  +R+     
Sbjct: 266 DGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADF---AGVKRRFDLVGE 322

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI 363
            G  T++D+ Y  +P  + A I   S +
Sbjct: 323 AGGVTVVDD-YAHHPTEIAATIEAASHL 349


>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 454

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 18/191 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGI 164
           +A ++ ITGS GKTTT  ++        +     G+    I   V    +R  V  +   
Sbjct: 106 QALVVGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGTAISGKVEGLGSRGIVVAELSS 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F+L          L   +R +IAV+  I P HL     +E  A+AKA IFE         
Sbjct: 166 FQL---------ELIDRLRVNIAVLINITPDHLDRHGTLENYAAAKARIFENQTGKDLAV 216

Query: 225 LNYD----DSFFELLKAKSHALGIKTIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           L++D      + ++ +A+   +  + + +   G S N     R  K     +  E+QL+G
Sbjct: 217 LSWDYPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTKIIARNELQLRG 276

Query: 279 K-SMEVVHHGI 288
           K ++E V  GI
Sbjct: 277 KHNLENVMCGI 287


>gi|119717286|ref|YP_924251.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
 gi|166224710|sp|A1SL79|MURC_NOCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119537947|gb|ABL82564.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
          Length = 446

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 12/172 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           L + A  A + +   ++A+ G+ GKTTT  +LT+AL  +    TYA  G           
Sbjct: 102 LPRSAALAAVMAGRRVVAVAGTHGKTTTTSLLTVALQAAGADPTYAIGGD---------- 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           LA   V+   G  +L ++   E         P+ AV+T I   HL  +   E  A+A  E
Sbjct: 152 LAATGVNAAEGTGDLFVAEADESDGAFLHYSPYAAVVTNIEADHLDQWGTPEAYAAAFDE 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
             + L   G +    DD     L  +  A G + +    +   A   +  W 
Sbjct: 212 FADTLAPDGFLVCVADDPGAAALAERHRAAGRRVVTVSARDAGALDGVTLWS 263


>gi|53729118|ref|ZP_00134082.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207507|ref|YP_001052732.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975477|ref|YP_001651070.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250498|ref|ZP_07336695.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244820|ref|ZP_07526919.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249218|ref|ZP_07531215.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251540|ref|ZP_07533447.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253774|ref|ZP_07535628.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256040|ref|ZP_07537828.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258231|ref|ZP_07539974.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260470|ref|ZP_07542165.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166222951|sp|A3MY91|MURC_ACTP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706335|sp|B0BRH8|MURC_ACTPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126096299|gb|ABN73127.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875578|gb|ABY68626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650486|gb|EFL80645.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854265|gb|EFM86471.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858742|gb|EFM90801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861004|gb|EFM93010.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863258|gb|EFM95198.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865462|gb|EFM97357.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867691|gb|EFM99536.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869873|gb|EFN01655.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 165/396 (41%), Gaps = 77/396 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG-- 168
           IA+ G+ GKTTT  M+++  +  K                      P  V+ G+ +    
Sbjct: 121 IAVAGTHGKTTTTAMISMIYTEAKLD--------------------PTFVNGGLVKSAGK 160

Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
            +HLG  R+L            HL +P ++V+T I P H+  + G  E++ +   +    
Sbjct: 161 NAHLGASRYLIAEADESDASFLHL-QPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFLRN 219

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQ 275
           L   G   +  DD   E +   +  +G + + ++G S+ AD+++  ++Q   Q  +  V 
Sbjct: 220 LPFYGLAVMCADD---ETVIEIAPQVG-RQVLTYGFSEKADYRIEDYQQTGFQGHYTVVC 275

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331
             G+ ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+     
Sbjct: 276 PNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILAALADF---QGAGRRFDQLGS 332

Query: 332 CALNQGFFTLIDESYNANPA----SMKAAIS------VLSQISPHGEGRRIAVLGDMCEM 381
                G   L+D+ Y  +P     ++KAA S      V+    PH   R   +  D  ++
Sbjct: 333 FIRPNGKVMLVDD-YGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQV 391

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLF 434
             LSQ   +D   +L +Y      + G    A   AL RSI        +  S+T D L 
Sbjct: 392 --LSQ---VDALIMLEVYAAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-DQLG 441

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +   + DGD+++ + + S    R+   L E + A
Sbjct: 442 EVLDQIIQDGDLILAQGAGSVS--RISRGLAESWKA 475


>gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1]
          Length = 496

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 21/230 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V         +     P+
Sbjct: 18  LIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDAPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++  L+   +A R   + +    ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 78  IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFEL--GMSHLGEIRFLTHLVRP--------HIA 187
           +        L   R+    P+ V   + +L  G +    +   +H +           IA
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           V+T ++  HL     +E   +AKA++F          +N DD F   L A
Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDDFGRRLAA 244


>gi|251788248|ref|YP_003002969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya zeae
           Ech1591]
 gi|247536869|gb|ACT05490.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya zeae
           Ech1591]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 191/461 (41%), Gaps = 71/461 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++  G +   
Sbjct: 4   QGRKVVIIGLGLTGLSCVDFFLARGVVPRVVDTRISPP---GLDKLPESVERHLGSLNEE 60

Query: 69  -VVNTDMV-ASIG-SLSIPVF------GVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +++ D++ AS G +L+ PV       G++ ++G +      A    +A I+AITGS GK
Sbjct: 61  WLLSADLIIASPGIALATPVLCDAAAAGIE-IIGDIELFCREA----QAPIVAITGSNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           +T    +T  +  + +          +IGVP  L  +  +    + EL    L E  +  
Sbjct: 116 ST----VTTLVGEMARAAGWAVGVGGNIGVP-ALELLKQESQLYVLELSSFQL-ETTYSL 169

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           H      A I  +   H + +  G+++  +AK  I+E  +      +N DD+    ++  
Sbjct: 170 HAA---AATILNVTEDHTNRYPLGLQQYRAAKLRIYENAK---VCIVNADDALTMPVRGA 223

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
                     SFG     D+ L + +    ++W+ V+    L  + +++V    G H   
Sbjct: 224 D-----DRCLSFGVDV-GDYHLNRQQG---ETWLRVKGERVLNTREIKLV----GQHNYT 270

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +A+ AL+ F    G   R++ AL +     +++S   N  S +
Sbjct: 271 NALAALALADAVGIPRSSALIALTTF---TGLPHRFQLALERNGVRWVNDSKATNVGSTE 327

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+S L     H +G    +LG   +  + S        + + LY        G  + AL
Sbjct: 328 AALSGL-----HVDGMLHLLLGGDGKSADFSPLLRYLQGDRIRLYCFGR---DGGQLAAL 379

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  +        ++TM+     I   +  GD+V++  S +C
Sbjct: 380 RPDI-----AERTDTMEQAMTLIAGRIQPGDMVLL--SPAC 413


>gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 464

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 106/275 (38%), Gaps = 40/275 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ GS GKTTT  M+   L+       C+      +G      R+P    FG    G +
Sbjct: 109 VAVAGSHGKTTTTSMIAHVLAHGGLDPTCV------VG-----GRVP---GFG----GNA 150

Query: 171 HLGEIRFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            +G+                 + PH+AV+T I   HL  +   +++ +A       +   
Sbjct: 151 RVGKKNIFVAEADESDGSFLKISPHVAVVTNIDQEHLDYYQSFDQLKAAFERFLASVPPE 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +  DD     +    +A      +++G + +AD            +   V+L+GK 
Sbjct: 211 GLAVVCLDDPELSNILPSLNA----PHWTYGFNPSADVVGSDVSAEGLSTSFSVRLRGKD 266

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +      I G H   N L T+ +      + +   +AL  F    G G+R+     +G  
Sbjct: 267 IGSFSLNIPGVHNVLNALATIAVGHHFGLEAECVREALERF---RGVGRRFTQVGEEGGI 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            ++D+ Y  +P  +   ++   Q  P    RR+ V
Sbjct: 324 RIVDD-YGHHPTEIGVTLAAARQAYPD---RRLVV 354


>gi|126741293|ref|ZP_01756971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
 gi|126717611|gb|EBA14335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GK+TT  +L   L S+ +     G    +IG  +     P D    + EL  
Sbjct: 122 VVAITGSNGKSTTVALLHHILESVGRDSQMAG----NIGRGVLDIDPPADGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +A++T ++  HL   +G+    +AK  +F EG      I ++ D
Sbjct: 178 YQTELARALT----PDVAILTNLSEDHLERHAGLGGYFAAKRRLFAEGGPDRAIIGIDED 233

Query: 229 DSFF 232
           +  F
Sbjct: 234 EGLF 237


>gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
 gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +  +  FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
 gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
          Length = 488

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I    +PV 
Sbjct: 22  ITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130
            VDD    L   A     +    ++A+TG+ GKT+    T+++   A             
Sbjct: 80  HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186
           S  +  Y  + + +     P+ L R+  ++   G+    M   SH  + R L   VR   
Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L    
Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAVEAATLAGCD 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+  + 
Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A++AL++     GR      A   G    +D  Y   P +++   +VL+ + P 
Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLG 376
             GR I V G
Sbjct: 367 TTGRVIVVFG 376


>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 496

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 145/378 (38%), Gaps = 49/378 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI+IDSR + P + F  + G   DGHD+   A ++GA  +VV       +  +++P   
Sbjct: 24  TGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGAAALVVER----WLDDVALPQLK 79

Query: 88  VDD------VLGALNKLAVAARLR------------SKATIIAITGSVGKTTTKEMLTIA 129
           V D      VLG +   A ++RL+            +   I  I    G+ T   + TI 
Sbjct: 80  VKDSRQAMAVLGGVFFGAPSSRLKVIGVTGTNGKTTTTYLIERILQDQGRETGL-IGTIQ 138

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                +TY   G+    + +   L  M     ++ + E+    L + R      R   AV
Sbjct: 139 RRFAGQTYPMSGTTPESLELQQYLHDMAEGGGEYCVMEVSSHALAQGR--VKGTRFRTAV 196

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--------EGLEKTGTIFLNYDDSFFELLKAKSH 240
            T +   HL     ++E   AK   F        E  E+     LN DD        ++ 
Sbjct: 197 FTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYAENPEERSYAVLNVDDPASAYFAKQTA 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + ++G  ++AD +       +  +   V     S ++    +G     N L  +
Sbjct: 257 A----EVITYGVEQDADVRASNISITARGTSFHVDTFRGSADISLRMVGKFNVYNALAAI 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAIS 358
               +    ++    +L      EGR +    A+++G  F  ++D  Y   P  ++   +
Sbjct: 313 SATLLEGIPLEQIKASLESVKGVEGRVE----AVDEGQDFAVIVD--YAHTPDGLE---N 363

Query: 359 VLSQISPHGEGRRIAVLG 376
           VL  ++   +GR I V G
Sbjct: 364 VLRTVNEFAKGRVICVFG 381


>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 123/320 (38%), Gaps = 45/320 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H LL  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLLSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD+  E     + A    T+ ++G    +D   +     S  +   +   
Sbjct: 231 NREKYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTP 286

Query: 278 GKSMEVVHHGIGYHMAQNML 297
            +S+ V    IG     N+L
Sbjct: 287 YESVNVTMKLIGKFNVYNVL 306


>gi|269795573|ref|YP_003315028.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
 gi|269097758|gb|ACZ22194.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
          Length = 499

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 31/188 (16%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVD 161
           L S +  +A+ G+ GKTTT  M  + L  +    ++A  GS               V  +
Sbjct: 110 LMSGSRAVAVAGAHGKTTTSAMTAVVLREVGLDPSFAIGGS---------------VITE 154

Query: 162 FGIFELGMSHLGEI----------RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            G    G S  G++           FL +  RP +AV+T + P HL ++        A  
Sbjct: 155 TGAVPGGHSGTGDVLVAEADESDGSFLAY--RPTVAVVTNVEPDHLDHYGTRAAFEEAFV 212

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQS 270
           E    +   GT+    DD+    L A+ HA     + ++G +  A   L  ++ +    S
Sbjct: 213 EFAGNIVPGGTLVACADDAGAAEL-ARRHAAAGGEVVTYGTAPGATALLSGYRVETDGTS 271

Query: 271 WMEVQLQG 278
             E+ L G
Sbjct: 272 AFELTLPG 279


>gi|33519614|ref|NP_878446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Blochmannia floridanus]
 gi|62900574|sp|Q7VQI9|MURD_BLOFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33517277|emb|CAD83661.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia floridanus]
          Length = 444

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 31/256 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A IIAITGS GK+T  ++++      K+    +G   N IGVP+ L+ +    +  + E+
Sbjct: 106 APIIAITGSNGKSTVTQLVS---KMAKQAGWSVGVAGN-IGVPV-LSLLKKQYELYVLEI 160

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
               L     +T+ +R   A I  I+  H+  +  G+EE   +K  I+       + F  
Sbjct: 161 SSFQLD----VTYSLRATAATILNISVDHMDRYPKGLEEYICSKKRIYH-----NSYFCV 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQGKSME 282
            +DS  + L       GI  +     SK+AD++L  +K     +W+    E  L    ++
Sbjct: 212 VNDS--DPLTKPLLNDGIYHVSFSMNSKSADYRLEYYKG---NNWIVANGEYVLSCAELK 266

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +++ + Y    NML  L +  I+      +++ L  F    G   R++          I
Sbjct: 267 -INNCMNY---MNMLSALALSDIVKIPRIVSLQVLRFF---SGLSHRFQLVYKNRNVCWI 319

Query: 343 DESYNANPASMKAAIS 358
           ++S   N  + K AI+
Sbjct: 320 NDSKATNVGATKEAIN 335


>gi|291326816|ref|ZP_06125975.2| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
 gi|291312715|gb|EFE53168.1| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
          Length = 472

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 130/326 (39%), Gaps = 68/326 (20%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T +      + +   L IPV    ++L  L       R R     IA+ G+
Sbjct: 62  ENASVVVVSTAISSENPEIQAAKELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       I   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 113 HGKTTTTAM-------ISGIYAQAGL-------------DPTFVNGGLVKSAGTHARLGS 152

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +AV+T I   H+  + G  + + +        L   G 
Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGDFDNLTNTFINFLHNLPFYGR 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
             +  DD     L  K   +G + I ++G S++AD ++ +++Q   Q +  +  +    +
Sbjct: 212 AVMCIDDPVIRSLLPK---IG-RYITTYGFSEDADVRITQYEQKGNQGFFTIARENMPEL 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335
            VV +  G H A N    + + +    D    + AL  F   +G G+R+    N      
Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEF---QGTGRRFDFLGNFPLRNV 324

Query: 336 ---QGFFTLIDESYNANPASMKAAIS 358
              +G   L+D+ Y  +P  + A I 
Sbjct: 325 NGKEGEVMLVDD-YGHHPTEVDATIK 349


>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
 gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 54/265 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  ++  +   +   T    G    +IGVP  L  +  D D  + EL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVLAKAAGLTVGVGG----NIGVP-ALDLLEQDADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N DD
Sbjct: 165 FQLET----TASLKLKAAAFLNLSEDHMDRYDGMADYRQAKLRIFDNTE---LAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                   ++       + +FG               S++    +++ G    ++ HG  
Sbjct: 218 R-------ETFPETETPLVTFG---------------SDEQAYGLEVDGNRTWLLDHGQR 255

Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335
                    +G H   N L+ L ++     D   ++ AL  +      G  +RC   A N
Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHKSLNALKTY-----TGLTHRCQVVADN 310

Query: 336 QGFFTLIDESYNANPASMKAAISVL 360
           +G    +++S   N AS  AA+S L
Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGL 334


>gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 460

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 108/274 (39%), Gaps = 48/274 (17%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI+G+ GKTT   ML+ I L +                 P  L    +D+  G F +G 
Sbjct: 114 VAISGAHGKTTCTSMLSNITLKANLD--------------PTILVGGELDIIGGNFRIGS 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ VI  I   HL  +  I+EI     +  + +   
Sbjct: 160 SDY----FITEACEYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPND 215

Query: 221 GTIFLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEV 274
           G +     DS  +  L KAK + L     Y F   +NAD   R      K C+  S+   
Sbjct: 216 GYLIGYIGDSRVKEILYKAKCNTLS----YGF---ENADVTARNITFNEKGCA--SFDVY 266

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +   K  ++     G H   N L ++ +  I   + D  I  LS     +G  KR+    
Sbjct: 267 KHNNKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLS---ECKGAHKRFEYKG 323

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                T+ID+ Y  +P  +KA ++   +I PH +
Sbjct: 324 EVNGVTVIDD-YAHHPVEIKATLNTSKKI-PHNK 355


>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
 gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 143/377 (37%), Gaps = 47/377 (12%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T  RM   +V+  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEVS-SHALSLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   E     + A    T+ ++G   ++D   +     S  +   +    +S+ +    
Sbjct: 241 DDPVTEEYMRSTAA----TVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNITMKL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L  +    +    + T I  ++      GR +       Q +  ++D  Y 
Sbjct: 297 IGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVDGG--QDYTVIVD--YA 352

Query: 348 ANPASMKAAISVLSQIS 364
             P S++  ++   Q +
Sbjct: 353 HTPDSLENVLTTAKQFA 369


>gi|154250395|ref|YP_001411220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769434|sp|A7HNT0|MURD_FERNB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154154331|gb|ABS61563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
          Length = 420

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVD 161
           L  K  IIA+TGSVGK+TT  M+   L S   +    G++   I   L   + P  + V+
Sbjct: 98  LDWKPKIIAVTGSVGKSTTVAMIN-HLISKSASSQISGNFGIPIAQVLLEGKKPEYIVVE 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              F+L         + T   +P++AVIT I P HL     +E    +K +I
Sbjct: 157 ISSFQL---------YWTPFFKPNVAVITNIYPNHLDWHPSMEHYVDSKFKI 199


>gi|322411163|gb|EFY02071.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 443

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 113/279 (40%), Gaps = 40/279 (14%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE   S  
Sbjct: 108 VAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE---SDE 155

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E  F+ +   P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D   
Sbjct: 156 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQ-- 209

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291
           EL K   +A     IY +G  +  DF      + +  S   V+  G+ +   H    G H
Sbjct: 210 ELKKITVNA----PIYYYGFEEENDFVASDVIRTTHGSDFTVKHDGQIIGRFHVPAYGRH 265

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANP 350
              N    +  + +   D++   + L  F    G  +R+   L N+   T+I + +  +P
Sbjct: 266 NILNATAVIANLFVAGIDMELVAEHLKTF---SGVKRRFTEKLINE---TIIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
             + A I    Q            PH   R IA+L D  
Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFA 358


>gi|110640304|ref|YP_668032.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 536]
 gi|191174588|ref|ZP_03036082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300984513|ref|ZP_07177005.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|123148432|sp|Q0TLP8|MURC_ECOL5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110341896|gb|ABG68133.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli 536]
 gi|190905135|gb|EDV64780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300306682|gb|EFJ61202.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|324012254|gb|EGB81473.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 60-1]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMHVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|27468331|ref|NP_764968.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57867174|ref|YP_188872.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           RP62A]
 gi|33301388|sp|Q8CS47|MURC_STAES RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68565678|sp|Q5HNG9|MURC_STAEQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27315877|gb|AAO05012.1|AE016748_246 UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57637832|gb|AAW54620.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis
           RP62A]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    +I
Sbjct: 255 FLSPQYGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVS-NQ----VI 309

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            + Y  +P  + A I           V++   PH   R  A L +  E   LS++  + L
Sbjct: 310 VDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
 gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 147/387 (37%), Gaps = 49/387 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H L+  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLVSCL--HDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T  RM   +V+  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALSLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD   E     + A    T+ ++G   ++D   +     S  +   +   
Sbjct: 231 NREKYAVLNSDDPVTEEYMRSTAA----TVITYGIDTHSDIMAKDIVMTSGGTTFTLVTP 286

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +S+ +    IG     N+L  +    +    + T I  ++      GR +       Q 
Sbjct: 287 SESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVDGG--QD 344

Query: 338 FFTLIDESYNANPASMKAAISVLSQIS 364
           +  ++D  Y   P S++  ++   Q +
Sbjct: 345 YTVIVD--YAHTPDSLENVLTTAKQFA 369


>gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
          Length = 585

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I  H  G  P   V G+S+DSR + P + + A+ G    G  F   A++ GA  V V TD
Sbjct: 42  IAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGA--VGVLTD 99

Query: 74  -----MVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTK 123
                ++A  G   +PV  VD V  A     VAAR+      +   ++ +TG+ GKTTT 
Sbjct: 100 AAGRALLAGQGLADVPVLEVDAVRTAAGT--VAARVYGGGGDAGPRLVGVTGTNGKTTTS 157

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTL---------ARMPV----DVDFGIFEL 167
            +    L ++ +    +G+     G   VP TL         A M +     VD  + E+
Sbjct: 158 FLSAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEV 217

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             SH    + +  L R  +A  T +   HL     ++E  +AKA +F+
Sbjct: 218 -SSHAVAYQRIAGL-RYAVAGFTNLTQDHLDMHGSMQEYFAAKAGLFD 263


>gi|289640742|ref|ZP_06472913.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509318|gb|EFD30246.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 500

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 116/313 (37%), Gaps = 60/313 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ GS GK+TT  MLT+ L +      A IG+    +G    +    V V     E G
Sbjct: 114 LVAVAGSHGKSTTSAMLTLVLRAAGVDPTAVIGAEVAQLGGNALVGAGRVFV-LEADEYG 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +  G        + P +AVIT +   H   F     +  A       +   GT+ +  D
Sbjct: 173 GAFAG--------LDPALAVITNVEWEHPDLFPDEASVRRAFTAFAARVRPGGTLVVCGD 224

Query: 229 DSFFELLKAKSHA----------LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277
           D     + A   A           G       G+++  D+ L+  +     SW  V L+ 
Sbjct: 225 DPGVRAVLAALPASAPVSESGSDAGPGDTTGGGRARVIDYGLQPGR-----SWQAVNLRT 279

Query: 278 ----GKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               G+   V H G           G H  +N L  L   + L  +V +A+  L+ F   
Sbjct: 280 TPGGGQRATVRHDGDDVGTLTLALPGAHTVRNALAVLAAATELGVEVASALAILATF--- 336

Query: 324 EGRGKRYR------CALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHG 367
            G  +R+           QG   +ID+ Y  +P  ++A ++   Q          + PH 
Sbjct: 337 TGADRRFTLVGTAPATDRQGPLEVIDD-YAHHPTEIRATLAAARQRAGTREVWVAVQPHT 395

Query: 368 EGRRIAVLGDMCE 380
             R  A+L D  +
Sbjct: 396 FSRLAALLDDFAD 408


>gi|238026133|ref|YP_002910364.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia glumae BGR1]
 gi|237875327|gb|ACR27660.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia glumae BGR1]
          Length = 466

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 152/366 (41%), Gaps = 41/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGSGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G++ +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDEDHMDTYGHDFARLKQAFIEFTQKLPFYGSVVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  ++L   S     K +  +G + +A+ +  +      +       +G++ + VV 
Sbjct: 218 DDPNVRQILPFIS-----KPVVRYGLAPDAEVRAEQVAARDGRMHFTAIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY---RCALNQGFFTL 341
           +  G H  QN L  + I + L    D AI +AL+ F+    R +RY     A   G +TL
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGV-ADAAIQQALADFNGVGRRFQRYGEIATADGAGSYTL 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  M A I+      P   GRR+ +             F  +   VLS  + 
Sbjct: 332 VDD-YGHHPVEMAATIAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-EFVNVLSTVDE 386

Query: 401 --ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G   +  A  +AL R++         +  T+D +   +   +  GDVV+  
Sbjct: 387 LVLTEVYAAGEAPIPTASGEALARALRASGRVDPAFVATVDEVPAALAQRVRAGDVVITM 446

Query: 451 SSNSCG 456
            + S G
Sbjct: 447 GAGSIG 452


>gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
 gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
          Length = 492

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 148/378 (39%), Gaps = 48/378 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F A+ G   DG  F   A   GA  V       A +   +  + 
Sbjct: 27  VAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPADLPEATAWIE 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+    
Sbjct: 87  -VADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASLGTVGIV 145

Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
                        + + +  TLAR+    D GI +L M   SH  E R L   V    A 
Sbjct: 146 TNRGAQYGSLTTPDPVTLHETLARL---ADEGITDLAMEASSHGIEQRRLDG-VELTAAA 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG--IK 245
            T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G  I+
Sbjct: 202 FTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAIR 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T       +  DF +R  +  +E     + L    K   V    +G    +N L+  G+ 
Sbjct: 262 TT-----GRGGDF-IRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLA 315

Query: 304 SILTA-DVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               A   D A     VF   EG     G+  R     G   L+D  Y   P +++    
Sbjct: 316 LATQAGQADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---H 366

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS + P   GR + V G
Sbjct: 367 VLSALRPFASGRLVVVFG 384


>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 501

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 23/224 (10%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            + G+ E+    L + R L       +AV T +   HL     +E+  +AKA +F     
Sbjct: 183 CELGVMEVSSHALAQGRVLG--CEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFNSDYL 240

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG 278
            G   +N DD + + L  K   +G    +S+  ++ +AD         S  ++  + ++G
Sbjct: 241 HGKAIINADDPYGKRLIEK---VGRDRTWSYSVQNPSADL------YTSNLTYTLIGVKG 291

Query: 279 KSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                V         +G +   N+L  +G V  L  D+ T +  L+ F    GR +R + 
Sbjct: 292 TLHTPVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQL 351

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +Q    ++D  Y   P S++   ++L    P  +GR I V G
Sbjct: 352 KPDQDISVIVD--YAHTPDSLE---NLLKAARPFIQGRMICVFG 390


>gi|190572802|ref|YP_001970647.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia K279a]
 gi|229620424|sp|B2FNN8|MURC_STRMK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190010724|emb|CAQ44333.1| putative UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas
           maltophilia K279a]
          Length = 478

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 102/255 (40%), Gaps = 29/255 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLTAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +++IT I   HL N+ +    + +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMSIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVV 284
           DD     L A++     + + S+G S  AD  +R      E S M   L   QG S EVV
Sbjct: 228 DDPEVAALAARTP----RHVMSYGMSPQAD--VRAENVVQEGSRMRFTLRLPQGTSQEVV 281

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFT 340
               G H   N L    +   L    D   +AL  F    G G+R+          G   
Sbjct: 282 LALPGRHNVLNALAAAAVGWQLGVAPDAIARALEGF---AGVGRRFNDLGEVTTASGAKV 338

Query: 341 LIDESYNANPASMKA 355
            I + Y  +P+ ++A
Sbjct: 339 RIIDDYGHHPSELEA 353


>gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 496

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           +N I ++S+ I   + F A+ G    G +FI  A++ G+ ++++ T  +   G +    +
Sbjct: 24  LNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILKHGIIYFIKN 83

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTT 121
           IP+    ++  +L++L+    L       +I ITG+ GKTT
Sbjct: 84  IPIIYFYNLNYSLSELSGKFYLHPSRYMNVIGITGTNGKTT 124


>gi|297583565|ref|YP_003699345.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
 gi|297142022|gb|ADH98779.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
          Length = 438

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 114/302 (37%), Gaps = 44/302 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L   L + K T   IG             +   + ++ +FE  
Sbjct: 102 TSIAVTGSHGKTSTTGLLAHVLENAKPTSYLIGD---------GTGKGMENSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P+ A++T I   H   F   E++  A  E+   + K   I   
Sbjct: 152 ------CEYRRHFLNYYPNYAIMTNIDFDHPDYFKDAEDVFQAFQEMANQVNK--AIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + L A      +  +Y +G S++ DF  +      E +  +V ++G        
Sbjct: 204 GDDESLQRLTA-----SVPIVY-YGFSEDHDFSAQNVDYDPEGTHFDVMIRGAFYGRFTI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G G H   N L  + I       ++T    ++ F    G  KR           LID+ 
Sbjct: 258 PGYGNHHILNALAVIAICHYEEVTLETIQTHIATF----GGVKRRFSETEMNGQILIDD- 312

Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  + A I           V++   PH   R  A L D      L  + H+ L ++
Sbjct: 313 YAHHPTEIAATIESARKKYPDRQVVAVFQPHTFSRTEAFLDDFAR--SLENADHVYLCDI 370

Query: 396 LS 397
            S
Sbjct: 371 FS 372


>gi|167614196|gb|ABZ89700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 441

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 113/255 (44%), Gaps = 28/255 (10%)

Query: 110 IIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II+ITG+ GK+T   M+  IA  S  K   C+G    +IGVP+ L  +   VDF I EL 
Sbjct: 108 IISITGTNGKSTVATMVEKIAKKSGYK--VCLGG---NIGVPI-LNMLNQKVDFYILELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L      T  ++  IAV+  I+  H++ +  G ++    K  +++  E      +N 
Sbjct: 162 SFQLEN----TFTLKSKIAVVLNISEDHINRYPEGFKQYKKIKLSLYQRAE---ICIVNV 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   ++++        K   +FG ++N+D+Q+      + ++ +  +   K +++    
Sbjct: 215 KNKLHDVIQTNKS----KKYITFG-TQNSDYQV----HYNHKNVILSRKNKKILDISQTL 265

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           + G H  QN L+ L I   +       I  L  F        R +    +     I++S 
Sbjct: 266 LWGAHNHQNALVALAISDSIKCPRHCIITTLQKF---SSLPHRLQIIHRKKGIDWINDSK 322

Query: 347 NANPASMKAAISVLS 361
           + N  S K A++ L+
Sbjct: 323 STNVNSTKVALNSLN 337


>gi|320352822|ref|YP_004194161.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121324|gb|ADW16870.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 130/332 (39%), Gaps = 39/332 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARL 104
           + GHD    A   GA +VV +T + A      +     +PV    ++L  L        +
Sbjct: 54  HQGHDAAWVA---GADVVVTSTAIAADNPEVVAAKEAHVPVVQRAEMLAEL--------M 102

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R K   IA+ GS GKT+T  M+   L+         +G   + +G    L         G
Sbjct: 103 RLKKYGIAVAGSHGKTSTTSMVAAILAEAGLDPTVVVGGKVHGLGSNARLGE-------G 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            F +  +   +  FL   + P I V+T I   HL  +  I+ I     E    L   G  
Sbjct: 156 EFLVAEADESDGSFLK--LSPVIEVVTNIDLEHLDYYRDIDHIKDMFLEFINRLPFYGVA 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  D+     L  +      K I ++G ++ AD Q  K    +  S   V+ + + + V
Sbjct: 214 VVCIDNDHIAQLLPRIQ----KRIATYGLTEQADLQAVKIISGNGTSQYTVRSRKEELGV 269

Query: 284 VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  +  G H+  N L  + +   L  D     +AL  F   +G  +R +         ++
Sbjct: 270 IRLNRPGKHLIYNSLAAVSVGLELEIDFSVIARALENF---QGVQRRLQIKGEAAGVLVV 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           D+ Y  +P  ++A +  + +  P    RR+ V
Sbjct: 327 DD-YGHHPTEIRATLDAVREGWPD---RRVVV 354


>gi|171316209|ref|ZP_02905432.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098623|gb|EDT43420.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 465

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 151/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G++ + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A ++      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATVAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +A    DAL R++         +  ++DG+   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDGVPDALAGVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|163790538|ref|ZP_02184967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
 gi|159874141|gb|EDP68216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 146 HIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P +L A+     D  I EL    L  I  L    +PHIAVIT I  AHL      E
Sbjct: 148 NIGTPASLVAQKATKDDEIIMELSSFQLMGITEL----KPHIAVITNIYSAHLDYHGTRE 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           E  +AK  I +   +   + LN+D      L  KS A    TI  F + +  D
Sbjct: 204 EYVAAKMTITKNQTEEDYLILNWDQPELRALSEKSKA----TIIPFSRKEILD 252


>gi|150020139|ref|YP_001305493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
 gi|166224767|sp|A6LJK7|MURD_THEM4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149792660|gb|ABR30108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
          Length = 426

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELG 168
           +IA+TGSVGK+TT  ++   L+  KK  A +     +IG+P+  L    +  ++ + E+ 
Sbjct: 107 VIAVTGSVGKSTTVSLIYHLLN--KKVRALLAG---NIGIPIAKLLNDNLRANYLVLEIS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L    F +   +P+I+ I  I P HL+    +E   S+K +I     K      N +
Sbjct: 162 SFQL----FWSKRFKPNISSILNIYPNHLNWHPDMEHYVSSKFKIASFQSKDDVFVYNPN 217

Query: 229 DSF 231
           D +
Sbjct: 218 DEY 220


>gi|257465205|ref|ZP_05629576.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
 gi|257450865|gb|EEV24908.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 40/196 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG-- 168
           IAI G+ GKTTT  M+++  +  K                      P  V+ G+ +    
Sbjct: 121 IAIAGTHGKTTTTAMISMIYTEAKLD--------------------PTFVNGGLVKSAGK 160

Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
            +HLG  R+L            HL +P ++V+T I P H+  + G  E++          
Sbjct: 161 NAHLGASRYLIAEADESDASFLHL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRN 219

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQ 275
           L   G   +  DD   E +   +  +G + + S+G S+ AD+++  ++Q   Q  +  V 
Sbjct: 220 LPFYGLAVMCADD---ETVMEIAPKVG-RQVISYGFSEKADYRIEDYQQTGFQGHYTVVC 275

Query: 276 LQGKSMEVVHHGIGYH 291
             G+ +EV+ +  G H
Sbjct: 276 PTGERIEVLLNVPGRH 291


>gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMD-9]
 gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus
           LMD-9]
 gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus thermophilus ND03]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I P   FFA KG  +   +F+  AVQ G G  V   D       + IP   V 
Sbjct: 38  LSYDSRDITPSTLFFA-KGAGFK-LEFLESAVQAGLGFYVAEKDY-----QVGIPAILVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A A     + K  ++A TG+ GKTT
Sbjct: 91  DIKQAMSLVAQAFYQHPQDKLKLLAFTGTKGKTT 124


>gi|323497896|ref|ZP_08102905.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
 gi|323316941|gb|EGA69943.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
          Length = 486

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 147/379 (38%), Gaps = 69/379 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281
             +  DD     L  K      + + ++G +++AD ++  ++Q  +Q    V  QGK+ +
Sbjct: 230 AIVCIDDPVVRELVPKIS----RQVITYGFAEDADVRIDNYRQEGQQGKFTVIRQGKADL 285

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCALN 335
           ++  +  G H   N L     +++ T D   D AI  L+     +G G+R+         
Sbjct: 286 DITLNIPGRH---NALNASAAIAVATEDDIADEAI--LNAMAGTQGTGRRFDHLGEFDTG 340

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELS 385
            G   L+D+ Y  +P  +   I                 PH   R   +  D   + E  
Sbjct: 341 NGAVMLVDD-YGHHPTEVDVTIQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLE-- 397

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FI 437
               +D+  +L +Y+     + G    A   AL R+I       +D +F+         +
Sbjct: 398 ---QVDVLILLDVYSAGEKPIPG----ADGRALCRTIRGRGK--LDPIFVPDSQALPAVL 448

Query: 438 QSSLVDGDVVVVKSSNSCG 456
            + L DGD+V+ + +   G
Sbjct: 449 ANVLQDGDLVLTQGAGDVG 467


>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
 gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
          Length = 489

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 132/355 (37%), Gaps = 31/355 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN------------TDMVAS 77
           + +DSR + P   FF +KG   DGHDF   AV++GA  +V               D   +
Sbjct: 26  LEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERGAVAIVAERPLSVNVPVVVVPDSRRA 85

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +  L+   +G       L  +       +   II          T  + T+      ++Y
Sbjct: 86  MAILADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQVARKAGKKTGLIGTVGTKIGDRSY 145

Query: 138 ACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             + +    + +  T  +M VD  V+F   E+    L + R   H     +AV T +   
Sbjct: 146 PAVNTTPESLVLQRTFKQM-VDEGVEFVTMEVSSHALHQGR--VHGCDYDVAVFTNLTQD 202

Query: 196 HLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           HL     +EE  +AK  +F  L       +     LN+DD   +  K  + A     I +
Sbjct: 203 HLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA----PIIT 258

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G  + +D    + +        ++     +M +    +G     N+L            
Sbjct: 259 YGIKEKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFS 318

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           + T  +AL+   P  GR +       Q F  ++D  Y   P S++ A+  + Q +
Sbjct: 319 LATIAEALANVSPVPGRFE--TVDEGQNFTVIVD--YAHTPDSVENALKTVRQFA 369


>gi|90407785|ref|ZP_01215963.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
 gi|90311145|gb|EAS39252.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
          Length = 487

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 171/420 (40%), Gaps = 60/420 (14%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T + A+   L       IPV    ++L  L       R R     IAI+G+ 
Sbjct: 78  GASVVVVSTAIDANNPELLAAEQARIPVVRRAEMLAEL------MRYRHG---IAISGTH 128

Query: 118 GKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++      + +  T+  IG   N  G    L +         + +  +   + 
Sbjct: 129 GKTTTTSLIASIFGQAKLDPTF-VIGGLLNSAGTNAKLGQ-------SRYLIAEADESDA 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFEL 234
            FL HL +P I+V+T I   HL  + G  EI         + L   GT  +  DDS  E 
Sbjct: 181 SFL-HL-QPMISVVTNIEADHLDTYQGDFEILKDTFVRFIQNLPFYGTAVVCLDDSVVES 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293
           L  +      +   ++G  + AD ++  + Q       ++    K +  V   + G H A
Sbjct: 239 LIPRF----ARQCVTYGFHEQADIRISNFSQLRSHCEFDLHRVNKDVLKVQLNLPGKHNA 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNAN 349
            N    + +      D +  I+AL  F   EG G+R+      A  +G   L+D+ Y  +
Sbjct: 295 LNAAAAIAVAMEENIDDEFIIEALHNF---EGIGRRFEQYGEFATGRGNVLLVDD-YGHH 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEV-----LSLYNIS 402
           P  ++A I+ +    P  E R +            +L + F   LA+V     L +Y+  
Sbjct: 351 PTEVQATINAVRAGWP--EKRLVMAYQPHRYTRTRDLYEEFAHVLAQVDQLLLLDVYSAG 408

Query: 403 HVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              ++G    A   +L R+I +       +  + + L   +   + DGD+V+ + + + G
Sbjct: 409 EAPIAG----ADSRSLCRTIRLQSNKEPIFVPSPEALPAALAEIMEDGDLVLTQGAGNIG 464


>gi|312148369|gb|ADQ31028.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi JD1]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAMA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +   
Sbjct: 162 -----GISNIFIVETCEYK--NHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLKYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|145297483|ref|YP_001140324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850255|gb|ABO88576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 36/258 (13%)

Query: 106 SKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDF 162
           ++  +IAITGS GK+T   ++   IA + +K     +G   N IG P L L + P  +D 
Sbjct: 95  TQVPVIAITGSNGKSTVTTLVGEMIAEAGLK-----VGVGGN-IGTPALELLKQP--MDL 146

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI    + +  
Sbjct: 147 CVLELSSFQLET----THSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIH---QHSKH 199

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +N DD       A++     +   SFG   N       + +C       + L G+ + 
Sbjct: 200 ILVNRDD-------AQTQPDVGQVWQSFGLDCNG------YGRCLLDGRHWLTLHGEPLL 246

Query: 283 VVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V     +G H   N L  + +   +    +  +  L  F   EG   R R         
Sbjct: 247 PVDEMKIVGAHNQANALAAMALCDAVGIPREPQLAVLRRF---EGLPHRARFVREVNGVR 303

Query: 341 LIDESYNANPASMKAAIS 358
            I++S   N  +  AA++
Sbjct: 304 WINDSKATNVGATLAAVA 321


>gi|225551700|ref|ZP_03772644.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
 gi|225371727|gb|EEH01153.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 34/219 (15%)

Query: 54  HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           ++F L  + +   L+V     N D   ++     L+IP+    +VLG L++         
Sbjct: 62  YEFSLKQLDRSFDLIVYSSAYNKDDLQVLLEAKELNIPILSYPEVLGELSR--------- 112

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           K   I I GS GKTTT   L +  + +       +GS          +A        GI 
Sbjct: 113 KHYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA--------GIS 164

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            + +    E +   H +   P++ ++T +   H+  F   E +  A  +  + L+K G +
Sbjct: 165 NIFIVETCEYK--KHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYIDNLKKNGIL 222

Query: 224 FLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQL 260
            +N DD+   LLK K   +  K  +I+S+G    +DFQ+
Sbjct: 223 IINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQI 258


>gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 496

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 136/379 (35%), Gaps = 54/379 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV----------QKGAGLVVVNTDMVASIG 79
           +S DSR     + F A  G   DG +++  A+            GA     N D VA+  
Sbjct: 21  LSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGAQAYGFNDDRVATYA 80

Query: 80  SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            L            A   +A A       +  + AITG+ GKT+T   L  AL  + +  
Sbjct: 81  GLK----------AATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRLGRKC 130

Query: 138 ACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHL 181
             +G+    IG P  +                 R   D  F    L  S +G        
Sbjct: 131 GIVGTLG--IGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACALEASSIGLEEGRLDG 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF-FELLKA- 237
            R  IAV T     HL   + + +   AK  +F   GL       +N DDS   EL  A 
Sbjct: 189 TRIQIAVFTNFTQDHLDYHASMPDYWRAKQMLFNWPGLRAA---IINVDDSRGLELSAAL 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +L + T+   G ++    Q +   Q +     +V   G+   +    +G +   N+L
Sbjct: 246 AGTSLDVWTLSCAGPAR---LQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVSNLL 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  +  +   +  A+ A +   P  GR +     L      L+   Y   P +++  +
Sbjct: 303 GVMASLRAMDVPLADAVAACADLLPVPGRTE----TLAVPGLPLVVIDYAHTPDALEKVL 358

Query: 358 SVLSQISPHGEGRRIAVLG 376
           + L+ ++    GR   V G
Sbjct: 359 TALNPVAQGRGGRLWCVFG 377


>gi|295695332|ref|YP_003588570.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
 gi|295410934|gb|ADG05426.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
          Length = 466

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M+   +  + +  TY  +G   +++G              G + + 
Sbjct: 108 IAVAGAHGKTTTSSMIAFVMNQAGLDPTY-IVGGVISNLG-------ENAKAGLGPYAVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL +   P++AV+T I P HL N+ G  E +  A       + + G   L  
Sbjct: 160 EADESDGTFLNY--HPYVAVVTNIEPDHLENYGGKFENLRGAYKRFLGQVREGGLAVLCA 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           DD     L ++   L  +T++ +G S  AD+
Sbjct: 218 DDPELSNLGSQ---LAGRTVW-YGFSSGADW 244


>gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
 gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKG------PHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           V G++ DSR + P   F AI G        +DGHD+I  A+Q GA  VV   ++      
Sbjct: 20  VRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYIPQAIQNGAVAVVGMREL-----H 74

Query: 81  LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           LS+P   V D   AL  L+ A       +  ++ +TGS GKTT   +L   L   +    
Sbjct: 75  LSVPYLRVADARAALADLSAAFWGYPAQRLELLGVTGSKGKTTVAVLLHHLLQRARPPVG 134

Query: 139 CIGSYNNHIG 148
            + +    IG
Sbjct: 135 RLSTVGIKIG 144


>gi|168262186|ref|ZP_02684159.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348903|gb|EDZ35534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG  ++ V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPNLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus opacus B4]
          Length = 524

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 171/409 (41%), Gaps = 48/409 (11%)

Query: 2   NPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            P+ T    L A+ G  +    G      V G+ + ++ I   + F A+ G    G +F 
Sbjct: 11  QPVRTTVSALAALAGARVEAPSGTAEHVIVTGVDLRAQGIVEGDLFAALPGARAHGAEFA 70

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLA--VAARLRSKATIIAI 113
             A+ +GA  ++ +   +A + +L    PV   DD  G L +L+  +  R   K  +I I
Sbjct: 71  ADALDRGATAILTDEAGLALVSALGTDAPVLVHDDPRGVLGELSATIYGRPSEKMQVIGI 130

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VP--LTLARMP-------VDVD 161
           TG+ GKTTT  ++  AL++  +T   +G+    +    VP  LT    P       V ++
Sbjct: 131 TGTSGKTTTSYLVEGALNAAGRTTGLVGTIETRMSGRRVPSALTTPEAPQLHALFAVMLE 190

Query: 162 FGIFELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214
            GI  + M   SH   LG +      VR  +   T ++  HL      E+  +AKA +F 
Sbjct: 191 QGIDTVVMEVSSHALSLGRV----DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFA 246

Query: 215 -EGLEKTGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKW--KQCSE 268
            E         +  DD +   +      +H++ + T+ +  ++  A +            
Sbjct: 247 AESSVHAQHAVICVDDVWGRRMAEVARGAHSI-VTTVATTPETGGAVWTAGPATVSASGS 305

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRG 327
           Q +     +G +++V     G +   N  + + + ++L  D   A+  ++ V  P    G
Sbjct: 306 QKFALTTAEGTTLDVELRLPGQYNVANASLAVALCAVLGVDPRDAVAGIAGVDVP----G 361

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +  R    Q F  ++D  Y   PA+++A I+ L +      GR   V+G
Sbjct: 362 RVQRIDRGQDFLAVVD--YAHKPAAVEAVIATLRE---QARGRVAVVVG 405


>gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
 gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 489

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 154/386 (39%), Gaps = 44/386 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I+ +  +  I+I ++S  P + FFA+ G    G+DFI  A+  GA L++  TD  A I
Sbjct: 7   IEIIKKLNIRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLII--TDQ-API 63

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            S S  V  V ++   +  +      +    ++A+TG+ GKT+             +  A
Sbjct: 64  TSYS-NVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAA 122

Query: 139 CIGSY-----NNHIGVPLTLARMPVD---------------------VDFGIFELGMSHL 172
            IG+      NNH+   L   ++  +                     ++F   E     L
Sbjct: 123 SIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFVALEASSHGL 182

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSF 231
            + R +   ++   A  T+ +  HL     + +   AK ++F E +   G   +N + + 
Sbjct: 183 DQNRLMD--IKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINE 240

Query: 232 FELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             ++++K +   G+K +      +  D Q+   +       +  + +    +     IG 
Sbjct: 241 LSIIQSKITDEFGLKLL---SVEQQGDIQIIDVQSSLNGQKVHFRYKNSDYKFEVPVIGR 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+ L +   +  D    I  LS   P +GR ++ +       +  +D  Y   P
Sbjct: 298 VHITNILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKIQFG---NCYAFVD--YALTP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376
            ++   ++ L  +  + +GR I + G
Sbjct: 353 NALATMLTELRAL--NNKGRLITIFG 376


>gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMG 18311]
 gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus CNRZ1066]
 gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus LMG 18311]
 gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus CNRZ1066]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I P   FFA KG  +   +F+  AVQ G G  V   D       + IP   V 
Sbjct: 38  LSYDSRDITPSTLFFA-KGAGFK-LEFLESAVQAGLGFYVAEKDY-----QVGIPAILVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A A     + K  ++A TG+ GKTT
Sbjct: 91  DIKQAMSLVAQAFYQHPQDKLKLLAFTGTKGKTT 124


>gi|312149248|gb|ADQ29319.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi N40]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +   
Sbjct: 162 -----GISNIFIVETCEYK--KHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|167550676|ref|ZP_02344433.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168464319|ref|ZP_02698222.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632677|gb|EDX51131.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205324415|gb|EDZ12254.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG  ++ V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPNLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 528

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 150/415 (36%), Gaps = 42/415 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVF 86
           G+S+DS   AP E F  + G    G  F   AV  GA  V+ + D  ++A   +   PV 
Sbjct: 49  GVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGALIAHEVAPGTPVL 108

Query: 87  GVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             DD   V+G L+        R   T  A+TG+ GKTTT   L   LS+        G+ 
Sbjct: 109 VHDDPRAVVGPLSAEVYHHPARGLVT-TAVTGTNGKTTTSYFLDAILSAHVGGCMVAGTV 167

Query: 144 NNHIG-----VPLTLARMP---------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
              +G      P T    P         V+   G   L  S    +      V   +A  
Sbjct: 168 ELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDVAGF 227

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AKA +F   E      +  DD +   L A++  + +  + +
Sbjct: 228 TNLQRDHLDFHKTMEGYLEAKARLFT-PEHARRGVICVDDQWGAALAAQA-PIEVDRVRA 285

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSIL 306
           +     AD+ +         S     L G   E +       G    QN  + L +    
Sbjct: 286 YPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIRA 345

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                TA  AL+  H   GR +R      +    ++D  +   P +M  A+  +  I+P 
Sbjct: 346 GVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPEAMDLALKAVRPITP- 402

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             GR I V G     G+  Q     L EV +             VL + D  PRS
Sbjct: 403 --GRLIVVFG---SDGDRDQGKRPMLGEVCARLA---------DVLVVTDENPRS 443


>gi|303251841|ref|ZP_07338012.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249142|ref|ZP_07531149.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649271|gb|EFL79456.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854430|gb|EFM86626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 165/396 (41%), Gaps = 77/396 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG-- 168
           IA+ G+ GKTTT  M+++  +  K                      P  V+ G+ +    
Sbjct: 121 IAVAGTHGKTTTTAMISMIYTEAKLD--------------------PTFVNGGLVKSAGK 160

Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
            +HLG  R+L            HL +P ++V+T I P H+  + G  E++ +   +    
Sbjct: 161 NAHLGASRYLIAEADESDASFLHL-QPMVSVVTNIEPDHMDTYGGDFEQMRATYVKFLRN 219

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQ 275
           L   G   +  DD   E +   +  +G + + ++G S+ AD+++  ++Q   Q  +  V 
Sbjct: 220 LPFYGLAVMCADD---ETVIEIAPQVG-RQVLTYGFSEKADYRIEDYQQTGFQGHYTVVC 275

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331
             G+ ++V+ +  G H A N    L +        +  + AL+ F   +G G+R+     
Sbjct: 276 PNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILAALADF---QGAGRRFDQLGS 332

Query: 332 CALNQGFFTLIDESYNANPA----SMKAAIS------VLSQISPHGEGRRIAVLGDMCEM 381
                G   L+D+ Y  +P     ++KAA S      V+    PH   R   +  D  ++
Sbjct: 333 FIRPNGKVMLVDD-YGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQV 391

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLF 434
             LSQ   +D   +L +Y      + G    A   AL RSI        +  S+T D L 
Sbjct: 392 --LSQ---VDALIMLEVYAAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-DQLG 441

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +   + DGD+++ + + S    R+   L E + A
Sbjct: 442 EVLDQIIQDGDLILAQGAGSVS--RISRGLAESWKA 475


>gi|218753875|ref|ZP_03532671.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           GM 1503]
 gi|289762314|ref|ZP_06521692.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
 gi|289709820|gb|EFD73836.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
          Length = 495

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 15/203 (7%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L  ++  LG
Sbjct: 184 PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAALAQRATELG 243

Query: 244 IKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQL-----QGKSMEVVHHGI-GYHMAQNM 296
           I+ + Y     +     L  W+Q    +   ++L       +   V+   + G HMA N 
Sbjct: 244 IRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVPGRHMALNA 303

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPAS 352
           L  L     + A  D  +  L+ F   EG  +R+     C + +    + D+ Y  +P  
Sbjct: 304 LGALLAAVQIGAPADEVLDGLAGF---EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTE 359

Query: 353 MKAAISVLSQISPHGEGRRIAVL 375
           + A ++    +   G+G R  V+
Sbjct: 360 ISATLAAARMVLEQGDGGRCMVV 382


>gi|223889325|ref|ZP_03623912.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
 gi|223885246|gb|EEF56349.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +   
Sbjct: 162 -----GISNIFIVETCEYK--KHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
 gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 123/320 (38%), Gaps = 45/320 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H LL  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLLSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD+  E     + A    T+ ++G    +D   +     S  +   +   
Sbjct: 231 NREKYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTP 286

Query: 278 GKSMEVVHHGIGYHMAQNML 297
            +S+ V    IG     N+L
Sbjct: 287 YESVNVTMKLIGKFNVYNVL 306


>gi|15595162|ref|NP_212951.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi B31]
 gi|216264426|ref|ZP_03436418.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
 gi|3914076|sp|O51757|MURC_BORBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2688761|gb|AAC67166.1| UDP-N-acetylmuramate--alanine ligase (murC) [Borrelia burgdorferi
           B31]
 gi|215980899|gb|EEC21706.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +   
Sbjct: 162 -----GISNIFIVETCEYK--KHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|313905181|ref|ZP_07838549.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
 gi|313469934|gb|EFR65268.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 108/267 (40%), Gaps = 38/267 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V  +  +V       IP++G         ++ +A R+  K  ++A+TG+ GKTTT  +L 
Sbjct: 77  VPCDLPVVEKFKEKKIPIWG---------EIELAYRI-GKGKVLAVTGTNGKTTTVTLL- 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                I K Y        +IG P T +     +  + + E+    +  I        P  
Sbjct: 126 ---GEIMKDYYPEVYVVGNIGTPYTDVVLQQTENAWTVAEVSSFQMETIEEF----HPVA 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + +T I   HL+    +EE    KA + E         LNY+D   E+L+  +  +  K 
Sbjct: 179 SALTNITEDHLNRHHTMEEYIRCKARVTENQTAEDCCVLNYED---EVLRPFAEKVNAKV 235

Query: 247 IYSFGKSKNADFQLRKWKQCS---EQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMT 299
           I+         F  R+  +     E   + ++  G+ ++VV  G    +G H  +N+++ 
Sbjct: 236 IF---------FSSRRVLEKGIYLEGDTIRLKDGGEVIDVVKTGDLQLLGLHNFENVMVA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326
           + +       +D+  + +  F   E R
Sbjct: 287 VAMAYFAGVPMDSIRRTICAFRGVEHR 313


>gi|270159082|ref|ZP_06187738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|289166082|ref|YP_003456220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
 gi|269987421|gb|EEZ93676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|288859255|emb|CBJ13189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 105/260 (40%), Gaps = 34/260 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVF-- 86
           I+ D+R+ AP  A F  + P+       L+       ++   +D+VAS G SL  P    
Sbjct: 30  IAFDTRAQAPGIAEFTREFPNVS-----LYIQNIPDEIIFQLSDIVASPGLSLDTPFLKK 84

Query: 87  ----GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
               GV  + G +  LA        A +IAITG+ GK+T    +T  +  + K      +
Sbjct: 85  AMKAGVS-IYGDIECLAREIH----APVIAITGTNGKST----VTTLVGEMAKAAGYKVA 135

Query: 143 YNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              +IG P L +       D  + EL    L     LT+ + P  A I  + P HL    
Sbjct: 136 VAGNIGTPVLDMLNDEHQYDLWVLELSSFQLD----LTYSLEPIAATILNVTPDHLDRHH 191

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E    AK  I+    K      N DD F+ +    SH    K       +K +   LR
Sbjct: 192 TMEAYIQAKQRIY---HKARVALFNRDD-FYTVPMTSSHD-DAKISQELSTNKTSSI-LR 245

Query: 262 K--WKQCSEQSWMEVQLQGK 279
           +     CSE+   E+ L+G 
Sbjct: 246 EPLSHACSEREKEEIHLRGN 265


>gi|195941973|ref|ZP_03087355.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi 80a]
 gi|224532449|ref|ZP_03673075.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512621|gb|EEF82996.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A  +   
Sbjct: 162 -----GISNIFIVETCEYK--KHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 492

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 139/359 (38%), Gaps = 39/359 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GIS  S  I P   F AI+G   DG+ +   AV+ GA  VV  TD    +  L+IPV  V
Sbjct: 13  GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVV--TDAPDRLPPLAIPVAVV 70

Query: 89  DDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D   AL  LA            ++ +TGS GKTT   ML     +       IG+   +
Sbjct: 71  PDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGTVRVN 130

Query: 147 IG---------VP--LTLAR-MPVDVDFGIFELGM--SHLG-EIRFLTHLVRPHIAVITT 191
           +G          P   +L R + +  D G+    M  S  G E+  + H V     ++T 
Sbjct: 131 VGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDH-VTFSCGILTN 189

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL       +  +AK E F  L     + +N DD     +     AL    + +  
Sbjct: 190 ICADHLDFHHTFADYLAAK-ERFLTLLGPSPLVVNRDDDHCRRMA----ALAGGPVIAVS 244

Query: 252 KSKNADFQLR-----KWKQCSEQSWMEV----QLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  AD   +      +      +W  +     +    + V     G H  +N L+    
Sbjct: 245 LTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAAA 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +     D    A S F   E R + YRC    G FT+ID++   NP S+ A  + ++
Sbjct: 305 GLLHGISPDEIAAAFSSFQGVERRLEIYRC----GGFTVIDDTA-LNPGSIDAVFATIT 358


>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
          Length = 448

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 20/173 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   + 
Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N  D+    L A S        +SFG +K  DF+     +   Q W+  Q  
Sbjct: 214 VNRADALTRPLIADS-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFD 260


>gi|134294648|ref|YP_001118383.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
 gi|166222968|sp|A4JB95|MURC_BURVG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134137805|gb|ABO53548.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
          Length = 465

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD +  +++   S     K +  +G S +A  +         +    V  +G+S + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSADAQVRAENIDARDGRMHFTVIREGRSPLAVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343
           +  G H  QN L  + I + L    D    AL+ F+    R +RY    + + G +TLID
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLID 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A I+      P   GRR+ VL         ++    D   VLS  +   
Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 401 ISHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           ++ V+ +G   +A    DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRTVGKVDPVFVATVDDVPDALAKVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|312880217|ref|ZP_07740017.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
 gi|310783508|gb|EFQ23906.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
          Length = 485

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 45/297 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
            +  V + L ++   I + G+ GKTTT  M+ +    + I  T A  G           L
Sbjct: 102 RRAEVLSDLFNRRRGIGVAGTHGKTTTSSMIALIAENAGISPTVALGGE----------L 151

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +  +   G  E  ++ L E      L  P IAV+T I   H+ ++   E +  A    
Sbjct: 152 CDIGCNAKLGSGETMVAELDESDGSFELFSPEIAVVTNIDWDHVDHYPTYESVGDAFHRF 211

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNADFQLRKWKQCSEQSW 271
             G +  G++ L  +D+    L  + H  G+  +T+Y++G           W        
Sbjct: 212 ALGKKPAGSLVLCAEDAGTRRLAERLHEDGLASETLYTYG-----------WGTSWTWGA 260

Query: 272 MEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLG------------IVSILTADVDTAIKALS 318
            +V  L G  +  + H  G  +    L   G              SI+    + + +ALS
Sbjct: 261 TDVTPLPGGGIRCLVHFRGTPLGTLSLRVSGEHNVLNALAACAACSIVGIPFEVSCRALS 320

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            F   + R +R   A     +    + Y  +P  + A +  L    PH   RR+ VL
Sbjct: 321 TFKGAKRRLQRVGAAEGVEVY----DDYGHHPREIHATLRALRGAFPH---RRLLVL 370


>gi|304314679|ref|YP_003849826.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588138|gb|ADL58513.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1002

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 141/385 (36%), Gaps = 91/385 (23%)

Query: 33  DSRSIAPQEAFFAIKGPHYD--GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIP 84
           D +   P E  F  +G   D  GH      V + AG + +      N  ++  I  L   
Sbjct: 544 DLKESTPLEDVFREEGIELDLGGHSM---DVLRRAGTIAITPALENNRRVLDLISGLDAD 600

Query: 85  VFGVDDVLG--ALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTY 137
           V GV+DVL    + K  V     +  T     + +I  + GKT  +  L+I         
Sbjct: 601 VIGVEDVLNMCPVEKPVVGVTGTNGKTTTTGILKSIIRAAGKTVPEHHLSI--------- 651

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELG-MSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N   VP   AR+P DV   + E+G     GEIR    L    + VIT I+  H
Sbjct: 652 -----QGNTELVPALQARLPGDV--AVVEIGTFGRRGEIRQSALLSGVSVGVITNISRDH 704

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHAL-GIKTIYSF- 250
           LS      +    K EI +  E    I LN DD    SF E L+ +   L GI+++ S  
Sbjct: 705 LSGGRRFSDYIECKREIIDTAE---VIVLNADDPIVASFAEGLREERAVLYGIQSMESAP 761

Query: 251 ----GKS-----KNADFQLRKWK-----QCSEQSWMEVQLQGKSMEVVHHG----IGYHM 292
               G+       N  +  R        QC    +   Q +  ++E    G    IG  M
Sbjct: 762 VMPEGRECPKCGNNLKYTRRTMGHLGDYQCV-CGYRRPQPEVMALEASADGFKLVIGSEM 820

Query: 293 AQNMLMTLGIVSI------------LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
               L T GI ++            L  D+D  ++ +  F    GR           F  
Sbjct: 821 RNVKLRTPGIFNVYNALAAAAAAWSLGVDMDDIVRGIESFSGVRGR-----------FQK 869

Query: 341 LIDE-----SYNANPASMKAAISVL 360
           L+D       Y  NPA ++A +  L
Sbjct: 870 LMDSPRVILDYAHNPAGVRAVMQEL 894



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 31/184 (16%)

Query: 110 IIAITGSVGKTTTKEML---------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           ++ + G+ GKTTT  M+         T++ SSI+ +    G       V L +     + 
Sbjct: 118 MVGVAGTDGKTTTTNMIDHILSSRYRTVSFSSIQDSLVIEGL------VELVVNGDVSNR 171

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  +FEL   H G IR    L      V+T + P H+  F   +E       I   +   
Sbjct: 172 DMAVFEL--PH-GTIRMADGL-EIVAGVVTNLTPDHMDEFRDYDEYIERNFSIKNLIAPE 227

Query: 221 GTIFLNYDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEV 274
           G + L  DD       + L+ KS       +Y  G  +  +F  R +   +E   S  ++
Sbjct: 228 GVLVLCGDDPVIAGLLDDLEVKS------VVYGLGNERKVEFMDRTFSGSAEPQVSATDI 281

Query: 275 QLQG 278
            L G
Sbjct: 282 DLMG 285


>gi|58583448|ref|YP_202464.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428042|gb|AAW77079.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 500

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 141 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 192

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    I +A AE  + L   G   L  
Sbjct: 193 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLLCI 250

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  ++     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 251 DDPEVAALAGRTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 306

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L     T  +AL  F    G G+R+        + G    +
Sbjct: 307 LPGRHNVLNALAAAAIGWQLGVAPGTIARALENF---AGIGRRFNDLGEVTTSTGARVRV 363

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 364 VDDYGHHPRELEA 376


>gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 495

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 148/377 (39%), Gaps = 46/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++AP +AF AI G    G  F+  A   GA  V+       +   L +PV 
Sbjct: 22  VSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEP---PAPDGLPVPVD 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 79  AI-AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137

Query: 142 S-----YNNHIG----VPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPH 185
           +     Y   +      PL L   A +    D G   + M   SH L + R     V   
Sbjct: 138 TLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGR--VDAVHFD 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           +AV T +   HL     + +  +AKA++F   GL+      +N DD F   L A    + 
Sbjct: 196 VAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAA---VVNLDDGFGRTLFASRDPV- 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              + + G S  A        Q  +         + +QG+   V    +G     N+L  
Sbjct: 252 ---LRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  L          L    P  GR  R   A       L+   Y   P +++ A+S 
Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQALSS 365

Query: 360 LSQISPHGEGRRIAVLG 376
           L     H + R I V G
Sbjct: 366 LRS---HAQDRLICVFG 379


>gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC
           10712]
          Length = 463

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 26/288 (9%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
           +A    L IPV    D L +L        LR+    IA+ G+ GKTTT  ML +AL+   
Sbjct: 86  LARAAELGIPVVHRSDALASLMD-----GLRA----IAVAGTHGKTTTTSMLAVALTELG 136

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  +YA  G           LA    +   G  E+ ++   E         P +A++  +
Sbjct: 137 LDPSYAIGGD----------LAGPGTNALHGDGEVFVAEADESDRSFQKYDPEVAIVLNV 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H +N++ ++EI  +       +   GT+ +       EL +  +   G+  I + G+
Sbjct: 187 ELDHHANYASMDEIYESFEAFTAKIRPGGTLVVGEHAGARELARRVADREGLD-IVTVGE 245

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+++D ++ K      +S + V L G          G H A N    L   + +  D   
Sbjct: 246 SEDSDARILKIVPNGMKSEVTVALDGVEHTFTVSVPGRHYAHNAAAALAAGARVGIDPAE 305

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +AL+ +    G G+R +         +ID SY  +P  M A +  +
Sbjct: 306 LAQALTAY---TGVGRRLQLKGEAKGVQVID-SYAHHPTEMTADLEAM 349


>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp.
          29_1]
 gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp.
          29_1]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          V+ I  DSR++  +  F  I G + DGHDFI   + +GA ++VV  D+
Sbjct: 23 VSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVINRGARVIVVEHDV 70


>gi|331701059|ref|YP_004398018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128402|gb|AEB72955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 459

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VD  L  + ++ +A+++ + A II +TGS GKTTT  M+T  L+  +       + N  
Sbjct: 92  AVDHHLPIITEVELASQI-TDAEIIGVTGSNGKTTTVTMITEILNQERAKGHAYAAGNIG 150

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           I    T  +   D D  + EL    L  I+ L     PH+AV+T I   HL      E  
Sbjct: 151 ISATETAKKATAD-DTIVMELSSFMLLGIKTL----HPHVAVLTNIFSNHLDYHKTRENY 205

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +AK  I           +N+D   +  L  +S A
Sbjct: 206 VNAKMRITMNQTPEDFFVVNFDSDEWRGLSKRSAA 240


>gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AITGS  K+T   ++    ++  +T A  G    ++G P  L  +  +VD  + 
Sbjct: 106 AKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGG----NLGTP-ALDLLADEVDLYVL 160

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 161 ELSSFQLE----TTEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQ---VVV 213

Query: 226 NYDDSF 231
           N DD  
Sbjct: 214 NRDDRL 219


>gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
 gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
          Length = 459

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 48/322 (14%)

Query: 64  GAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T    D V  + +  L+IP          L++  + ARL ++   IA+ G+ 
Sbjct: 63  GADIVVYSTALSRDNVERVAAEELNIPT---------LHRSQMLARLLNERKGIAVAGAH 113

Query: 118 GKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  M+ + +   ++  TY  IG    ++G      +     +F + E   S   + 
Sbjct: 114 GKTTTSSMIALVMERCNVDPTY-IIGGEITNLGTNAKAGKS----EFVVAEADES---DG 165

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD-SFFE 233
            FL +   P   ++T I   HL N+ G    + SA  +    +   G   +  DD +  E
Sbjct: 166 SFLQY--HPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIVCADDQNIRE 223

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292
           +L      L  + I ++G    AD+     +    +    +  +G ++  +   + G H 
Sbjct: 224 MLP----QLQTRVI-TYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIELSVPGKHN 278

Query: 293 AQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             N + T  ++S L A +  D     +  FH   G  +R++  L +    LI + Y  +P
Sbjct: 279 MYNAMAT--VISCLEAGIPFDQIAATIVEFH---GAKRRFQV-LGESNDILIIDDYAHHP 332

Query: 351 ASMKAAISVLSQISPHGEGRRI 372
             ++A IS     +    G+RI
Sbjct: 333 TEIEATIS-----AARATGKRI 349


>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter sp. X514]
 gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
 gi|226722952|sp|B0K3H2|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           sp. X514]
 gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
          Length = 454

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +++D+V +     I + G         ++  A R  SKA I AITG+ GKTTT  +L 
Sbjct: 78  VPIDSDIVKTAQEKKIELLG---------EVEFAYRF-SKAPIYAITGTNGKTTTTSLLG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +  +     G    +IG PL  A M   + DF + E+    L  I+      +P I
Sbjct: 128 EMFKNTGRKVYVAG----NIGYPLIYAVMEAAEDDFIVAEISSFQLETIKEF----KPKI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + I  I P HL      E     K  IFE   +     LNYDD     LK K+ 
Sbjct: 180 SCIINITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNYDDPVTWSLKNKAK 233


>gi|154174300|ref|YP_001408218.1| Mur ligase family protein [Campylobacter curvus 525.92]
 gi|112802478|gb|EAT99822.1| Mur ligase family protein [Campylobacter curvus 525.92]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 21/146 (14%)

Query: 81  LSIPVFGVDDVLGALN----KLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIK 134
           ++I    + D+L  LN    K A   +L   S   +I IT S GKT+ K  L   L    
Sbjct: 125 VAIISLALSDMLERLNFKNFKRAADKKLAELSNLKVILITASYGKTSIKNFLYELLKDEF 184

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
             +    S N       TLA +  DV+          I E G    G+I+ +T  + PHI
Sbjct: 185 NCHKTPRSVN-------TLAGLMKDVNENLTQQTQIYIAEAGARLKGDIKEITDFLNPHI 237

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAE 212
            ++  I   H+  F  IE I + K E
Sbjct: 238 VIVGEIGAQHIEYFKSIENIRATKLE 263


>gi|114330272|ref|YP_746494.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314677|sp|Q0AJE2|MURC_NITEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114307286|gb|ABI58529.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
          Length = 473

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 42/368 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ++   L+   +    +      IG  L        +  G F +  +
Sbjct: 108 IAIAGTHGKTTTTSLVASILAEAGQDPTFV------IGGRLKTVDSHARLGKGEFIVVEA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL   ++P + V+T I   H+S +      +     E  E L   G   L  DD
Sbjct: 162 DESDASFL--YLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVLCADD 219

Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLR----KWKQCSEQSWMEVQLQG--KSME 282
                +      +  K + ++G  S+NA  Q+R    +  QC       + + G  ++++
Sbjct: 220 PHVSAII----PMVSKQVTTYGITSENA--QIRATDIRHDQCKMHFCAHIGVNGSARTLD 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFF 339
           +  +  G H   N L  + + + L    +  +KAL+ F   + R ++Y   R   ++  F
Sbjct: 274 ITLNLPGKHNVLNALAAIAVGNELNIPDEAMVKALATFGGVDRRFQQYGEIRLP-DRRSF 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TLID+ Y  +PA + A ++      P   GRR+ ++            F  D   VLS  
Sbjct: 333 TLIDD-YGHHPAEIAATMAAARNAFP---GRRLVLVFQPHRYSRTRDLFE-DFVRVLSSA 387

Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +   ++ ++ +G   +   D  +L R+I V       Y E ++ L   + + + +GDVV+
Sbjct: 388 DALLLTEIYSAGEEPIIAADSKSLVRAIRVQGKIEPIYIEHINELKSAVHTVVQEGDVVL 447

Query: 449 VKSSNSCG 456
           +  + S G
Sbjct: 448 IMGAGSIG 455


>gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 486

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 25/170 (14%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV+G          + +A RLR   +   +A+TG+ GKTTT  ML   L +     A +
Sbjct: 105 VPVWG---------DVELAWRLRGPDSPPWLAVTGTNGKTTTVRMLASILEAAGLRTAAV 155

Query: 141 GSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           G    +IGV L    L   P DV     EL    L         +R H   +  +AP HL
Sbjct: 156 G----NIGVSLLDIVLGETPYDVL--AVELSSYQL----HWAPSLRAHSGAVLNLAPDHL 205

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
                +   A+ K  I+EG  +   ++   D +  +L++A     G + I
Sbjct: 206 DWHGSMAAYAADKGRIYEG-NQVACVYNAADPATEDLVRAADVEEGCRAI 254


>gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
 gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 27/239 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ + ++ RL  +A IIA TG+ GKT+T  M++  L+   +    +G+     G+   + 
Sbjct: 84  ISDIELSFRLFPEAKIIATTGTNGKTSTTSMISHILNESGRKAISVGNIGE--GILWQMY 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV---RPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             P      IF   +S      F  H V   +PHIA IT I   H+      ++  ++K 
Sbjct: 142 ENPS----AIFSCELSS-----FQLHDVSTYKPHIACITNITEDHIDWHGSFDDYINSKL 192

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I    +    + +N++D      KA   A     +Y F   +  D          + S 
Sbjct: 193 NICRKQDSGDFLVINHEDPILVDHKADFRA----KVYEFSSKEEVD-----RGAYLKGSS 243

Query: 272 MEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  + QGK+++++       IG H  +N++  +    I    ++  I+    F   E R
Sbjct: 244 IFFKDQGKNIKLMDVDDLSIIGRHNYENLMAAILACFIYGVSIEDIIRGSKSFKSIEHR 302


>gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter hepaticus ATCC 51449]
 gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus
           ATCC 51449]
          Length = 463

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 44/259 (16%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY----NNHIGVP 150
           LN + +A    +   I+ ITG+ GKTTT  ++   L  +    A +G+     N H   P
Sbjct: 74  LNDILMANFSHNSPNIVGITGTNGKTTTAAIIYSILLDLGFNVALLGTRGFFINEHRIKP 133

Query: 151 LTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             L               M    +F I E+  SH  E   +  L    + ++T I   HL
Sbjct: 134 KGLTTPSMLELYENLCIAMEQKCNFFIMEVS-SHAIEQERIAGLDFA-LKILTNITSDHL 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-------IYSF 250
                +EE    K   FEG    G   LN D+ +       ++  GI+        +Y+ 
Sbjct: 192 DYHKSVEEYRRIKNSFFEG---EGRKLLNADEPYIYCTDKAAYFYGIEKKGNLSVDVYAL 248

Query: 251 --GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G      ++ R +K  +EQS ++  L GK           H   N L  +G V ILT 
Sbjct: 249 ENGIDGYISWRERDYK-TNEQSAIQAHLYGK-----------HNLYNTLAAIGAVKILTQ 296

Query: 309 D-VDTAIKALSVFHPKEGR 326
           + ++   +AL  F    GR
Sbjct: 297 EPLERIAEALEHFGGVSGR 315


>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 20/200 (10%)

Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +KK Y  +    N IG+P   T+     +  F + E+    L  I++     +P +  I 
Sbjct: 132 LKKQYEDVVVCGN-IGLPFIDTIETSSENTIF-VLEISSFQLETIKYF----KPKVGCIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL+    +E    AK  IFE +++ G   LNYD++    L      L    +  F
Sbjct: 186 NITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDL----IGLAKGNVIVF 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306
            K+K   F+   +    E+  +    +GK+ E++        G H  +N L  +      
Sbjct: 242 SKNK-CQFKNMVF---VEKDTIYFTFEGKTQEIMKKDEIFIPGEHNLENALAAISCTLPF 297

Query: 307 TADVDTAIKALSVFHPKEGR 326
             + DT  + L  F   E R
Sbjct: 298 GIEKDTIEQVLKTFRGVEHR 317


>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 49/243 (20%)

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---PHIAVITTI 192
           T AC      +IGVPL    +  +++ G+  + +S      F    +R   P +A +  I
Sbjct: 139 TAAC-----GNIGVPLI--SVIDEIEHGVVSVEVSS-----FQLETIREFHPRVAAVLNI 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSF 250
            P HL     +E+   AKA+I           LNY+D++   LK  AKS  +   T    
Sbjct: 187 TPDHLDRHGTMEQYVEAKAKILSNQGPDDFSVLNYEDAWVRRLKTEAKSQVIFFSTARRL 246

Query: 251 GKS---KNADFQLRKWKQ----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    ++   + R +      C  ++   V L+G+           H  +N+L  +GI 
Sbjct: 247 PRGVYVEDGKIKARLYDDEVVICPREN---VALRGE-----------HNLENVLCAVGIA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLIDESYNANPASMKAAISV 359
             L    DT    L  F     +G R+R      +N   +  +++S   NP S   A+  
Sbjct: 293 IALGVKPDTIADTLRSF-----KGVRHRLEEVRRVNGVLY--VNDSKGTNPESTIKALQA 345

Query: 360 LSQ 362
             +
Sbjct: 346 FQE 348


>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
           cluster bacterium]
          Length = 434

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           SI ++  D  +  ++ + + +R   KA +I ITGS GK+T  ++L   +++  K  A  G
Sbjct: 76  SIVIWARDKNIPVVSDIELFSRF-VKAPVIGITGSNGKSTVTQLLGDMITNSDKKVAVGG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELG---MSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
               +IG P  L  +   +D+ + EL    + +  +++ LT        V+  I P HL 
Sbjct: 135 ----NIGKP-ALDCLDDQIDYYVLELSSYQLDYTNQLKLLT-------GVVLNITPDHLD 182

Query: 199 NFSGIEEIASAKAEIFE 215
            +   ++   +K  ++ 
Sbjct: 183 RYDSFDDYTDSKLSLYR 199


>gi|157147488|ref|YP_001454807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           koseri ATCC BAA-895]
 gi|157084693|gb|ABV14371.1| hypothetical protein CKO_03287 [Citrobacter koseri ATCC BAA-895]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 149/355 (41%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P   A M +D    ++
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDAARELY 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            L +S   ++   + L +   A I  +   H+  +  G+++  +AK  ++E  +      
Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG +   D+ L + +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPVRGAD-----ARCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S        + + LY 
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSSLTRYLGGDRVRLYC 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     +   L  GD+V++  S +C
Sbjct: 370 FGR---DGAQLAALRPEI-----AEQTETMEEAMRLLAPRLQPGDMVLL--SPAC 414


>gi|119963916|ref|YP_947471.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter aurescens TC1]
 gi|189028970|sp|A1R5F9|MURC_ARTAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119950775|gb|ABM09686.1| UDP-N-acetylmuramate--alanine ligase [Arthrobacter aurescens TC1]
          Length = 456

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 20/257 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           ++ + G+ GK+TT  M+ + L  + +  ++A IG+    +GV           D  + E 
Sbjct: 113 VVTVAGTHGKSTTTSMVAVLLKEAGLDPSFA-IGANVPALGVNAAHGSS----DIFVAEA 167

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   +  FL +  RP IAV+T +   HL ++   E + ++  +    L   G +    
Sbjct: 168 DES---DGSFLNY--RPLIAVVTNVEADHLDHYGTPEAVFASFDDFAALLPAQGVLLACS 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+    L  ++ + G   + ++G S +AD +L           + V L G   ++    
Sbjct: 223 DDAGARALADRTASKGTTRVLTYGTSDDADIRLHDGGPGD----VSVALDGGVHKLELQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N      +   L  +   A  AL  F    G  +R+     +G    + + Y 
Sbjct: 279 PGRHNALNAAAAFAVAVELGVEPGAAAAALGHF---TGASRRFELK-GRGRGVRVYDDYA 334

Query: 348 ANPASMKAAISVLSQIS 364
            +P  ++AA+S    ++
Sbjct: 335 HHPTEVRAALSAARSVA 351


>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 31/264 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
           +KA IIAITG+ GKTTT  ++   L +  K  +  G    +IG PL   A      D+ +
Sbjct: 106 TKAPIIAITGTNGKTTTTTLIGEILKNDGKNISVAG----NIGTPLIQEADKNGSKDYIV 161

Query: 165 FELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  I RF     +P I+VI  I   HL+     E    AKA I E  ++    
Sbjct: 162 VEVSSFQLENIVRF-----KPKISVILNITEDHLNRHKTFENYIEAKARILENQDEEDFT 216

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQG 278
            LNYDD     L+ ++ +   K ++    S+  + Q   + +       E   +   L+ 
Sbjct: 217 VLNYDDPIVASLEKRARS---KIVFF---SRKQELQEGVYVKNDVIVIRENGNIYPILKA 270

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           K +     GI G H  +N L  + +  I  A+++   + L  FH  E R + Y   ++  
Sbjct: 271 KEL-----GIKGSHNLENALAAVAVAWITKANLNNLAETLKDFHGVEHRLE-YVDTIDGV 324

Query: 338 FFTLIDESYNANPASMKAAISVLS 361
            F  I++S   NP + + A+  + 
Sbjct: 325 KF--INDSKGTNPDAAQKALEAVD 346


>gi|325911662|ref|ZP_08174069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|329921080|ref|ZP_08277603.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
 gi|325476428|gb|EGC79587.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|328934987|gb|EGG31476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
          Length = 460

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 27/264 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGK 279
             N+D       EL   K+H      + +F +  N AD+ +       EQ ++E Q   +
Sbjct: 227 IANFDQKNILEQELSLTKAH------VVTFSEESNQADYYI------GEQ-YLESQADHE 273

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            M++    I G H  QN L+ + I  I+ A  +     LS F    G   R +  +    
Sbjct: 274 IMKISDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMTYNN 330

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
             + ++S + N  +   AI   SQ
Sbjct: 331 RRIYNDSKSTNIEAASVAIPSFSQ 354


>gi|219870389|ref|YP_002474764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
 gi|219690593|gb|ACL31816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
          Length = 432

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITGS GK+T   + T+     K+    +G   N IGVP  L+ +  D +  +
Sbjct: 103 EAKAPIIAITGSNGKST---VTTLTTEMAKQAGVKVGMGGN-IGVP-ALSLLKGDYELYV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            EL    L      T+ ++   A I  I+  H+  +  IE+   AK +I+
Sbjct: 158 LELSSFQLE----TTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIY 203


>gi|310659201|ref|YP_003936922.1| UDP-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Clostridium
           sticklandii DSM 519]
 gi|308825979|emb|CBH22017.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Clostridium
           sticklandii]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 91/228 (39%), Gaps = 35/228 (15%)

Query: 146 HIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P     +  D D F I EL    L  I+      RP I+ I  I   HL+    + 
Sbjct: 138 NIGYPALEQAVVSDADTFLITELSSFQLESIKTF----RPCISAILNITEDHLNRHKTMS 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E   AK  IFE       + LNYDD   ELL+     +  K IY         F  R+  
Sbjct: 194 EYMKAKFRIFENQSSDEFLVLNYDD---ELLRLSQSEIKPKIIY---------FSRREI- 240

Query: 265 QCSEQSWME----VQLQGKSMEVVHHG-----IGYHMAQNMLMTLGIVSILTADVDTAIK 315
              E  ++E    V   G + E +        +G H  +N+L  + I   + A +D +I 
Sbjct: 241 -LKEGIFVENEQIVACIGNTKEYIMDVKDILLLGQHNLENVLAAVSIA--VLAGIDKSII 297

Query: 316 ALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLS 361
              V +    RG  +R  L + +     I++S   NP S   A+  ++
Sbjct: 298 KQEVMN---FRGVEHRLELVRTYNDVNYINDSKATNPDSSIKALEAMN 342


>gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
          [Xenorhabdus nematophila ATCC 19061]
 gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
          [Xenorhabdus nematophila ATCC 19061]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
          +P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G   V+      A  G++
Sbjct: 17 IPELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGVAAVIAEAKGKAGHGTI 76

Query: 82 S----IPVFGVDDVLGALNKLA 99
               +PV  +DD+   L+KLA
Sbjct: 77 QKVHGVPVIYLDDLNNKLSKLA 98


>gi|289549278|ref|YP_003474266.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
 gi|289182895|gb|ADC90139.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
          Length = 448

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 99/261 (37%), Gaps = 27/261 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ GS GKTTT  M+   L             +  + +   L R   +   G  +  +S
Sbjct: 109 VAVCGSHGKTTTTSMIAYILHE--------AGLDPTVLIGGILQRFNGNARLGKGDFIVS 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P +AVIT I   HL  +   + I  A  E    +   G   LN DD 
Sbjct: 161 EADESDGSFLKLTPTVAVITNIDREHLDFYKDYDSIRKAFLEFANSVPFYGFSVLNADDE 220

Query: 231 FFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
               +    +K H       Y++G    A    +  +        +V   GK++  +H  
Sbjct: 221 GCSQIIPYVSKKH-------YTYGIQTEAHLMAKNLRLLEGTYSFDVVWMGKNLGNIHLK 273

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT--LIDE 344
           + G H  QN L ++ +   +    D   +AL  F     R    R  L +GF+    + +
Sbjct: 274 VPGKHNVQNALASILVALQMDVSFDVIKEALESF-----RNAERRLEL-KGFYKGFPVYD 327

Query: 345 SYNANPASMKAAISVLSQISP 365
            Y  +P  +++ I  + ++ P
Sbjct: 328 DYGHHPTEIRSVIKAVREMYP 348


>gi|262037265|ref|ZP_06010747.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
 gi|261748737|gb|EEY36094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
          Length = 455

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 104 LRSKATIIAITGSVGKTTT----KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           +  K  +I+ TG+ GKTTT     E+L  A  ++K       S+   +G    L      
Sbjct: 87  MDKKIKVISFTGTNGKTTTCTKMYELLEFAGYNVKLAGNAGYSFAKLVGDEEPL------ 140

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + EL    L         +  +IA I  + P HL+ ++ +EE    K +IF+   K
Sbjct: 141 -DYIVLELSSYQLEN----DPQIHSYIAGIINLTPDHLTRYNSVEEYYITKFDIFQKQNK 195

Query: 220 TGTIFLNYDDSFFELL 235
                +N DD+ FE L
Sbjct: 196 DDFAVINLDDAEFERL 211


>gi|213646586|ref|ZP_03376639.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 479

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|221217628|ref|ZP_03589097.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224533430|ref|ZP_03674023.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225550260|ref|ZP_03771219.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226320864|ref|ZP_03796416.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
 gi|221192574|gb|EEE18792.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224513392|gb|EEF83750.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369128|gb|EEG98582.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226233730|gb|EEH32459.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 47  KGPHYDG-HDFILHAVQKGAGLVVV----NTD---MVASIGSLSIPVFGVDDVLGALNKL 98
           K  +YD  ++F L  + +   L+V     N D   ++     L+IP+    + LG L++ 
Sbjct: 54  KISYYDNIYEFSLKQLDRSFDLIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSR- 112

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
                   K   I I GS GKTTT   L +  + +       +GS          +A   
Sbjct: 113 --------KYYSIGIAGSHGKTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAMA--- 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                GI  + +    E +   H +   P++ ++T +   H+  F   E +  A      
Sbjct: 162 -----GISNIFIVETCEYK--NHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLRYIN 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE 268
            L+K G + +N DD+   LLK K   +  K  +I+S+G    +DFQ+      SE
Sbjct: 215 NLKKNGILIINSDDN--NLLKIKRQ-INRKDISIFSYGSGDLSDFQISNIAVRSE 266


>gi|156973219|ref|YP_001444126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           harveyi ATCC BAA-1116]
 gi|166224769|sp|A7MXR3|MURD_VIBHB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156524813|gb|ABU69899.1| hypothetical protein VIBHAR_00900 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 32/254 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  ++  +   +   T    G    +IGVP  L  +  D D  + EL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALDLLEQDADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N DD
Sbjct: 165 FQLES----TLSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDNAE---LAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                   ++       + +FG    +D Q    +    ++W+    Q          +G
Sbjct: 218 Q-------ETFPDTETPLVTFG----SDEQAYGLEADGNRTWLLDHGQRVIASDELKLVG 266

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N L+ L ++     D   ++ AL  +      G  +RC   A N+G    +++S 
Sbjct: 267 KHNLANALVVLALLKAADVDYHKSLNALKTY-----TGLTHRCQVVADNRG-VKWVNDSK 320

Query: 347 NANPASMKAAISVL 360
             N AS  AA+S L
Sbjct: 321 ATNIASTIAALSGL 334


>gi|85712532|ref|ZP_01043580.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
 gi|85693666|gb|EAQ31616.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
          Length = 489

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 148/375 (39%), Gaps = 55/375 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ++    +  ++     IG   N  G    L           + +  
Sbjct: 123 IAVAGTHGKTTTTSLVASVFAQAERDPTFVIGGLLNSAGSNARLGSSK-------YLIAE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P +AV+T I   H+  + G    +     +    L   G   +  D
Sbjct: 176 ADESDASFL-HL-QPMVAVVTNIEADHMDTYGGDFSRLLDTYVDFLHNLPFYGLAVMCID 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
           D     L  +   +G + I ++G S++AD +   + Q   QS  +V   G + + V  + 
Sbjct: 234 DPAVRELIPR---VGRQAI-TYGFSEDADVRAVDYHQHQGQSHFKVLRDGHAPLNVSLNL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFT--- 340
            G H   N L  + + S    + D   +AL+ F   EG G+R+     C ++ G+ T   
Sbjct: 290 PGRHNVLNALAAVAVASDEGIEDDAIQRALNKF---EGIGRRFEYHGECRVS-GWSTETP 345

Query: 341 ---LIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQS 387
              ++ + Y  +P+ + A I    Q            PH   R   +  D   +  LSQ 
Sbjct: 346 DGVMVVDDYGHHPSEVDATIKAARQGWPDKRLVMAFQPHRYSRTRDLYEDFVNV--LSQ- 402

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSL 441
             +D   +L +Y      +SG    A   +L RSI         Y    D L   I   L
Sbjct: 403 --VDTLLLLEVYGAGETPISG----ADSRSLCRSIRQRGQLDPIYVSDTDALLEIIGDVL 456

Query: 442 VDGDVVVVKSSNSCG 456
             GD+++ + + + G
Sbjct: 457 QPGDLLLTQGAGNVG 471


>gi|298207886|ref|YP_003716065.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 13/110 (11%)

Query: 96  NKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           NK+A+ + +      + ATII ITGS GKTT    +T     I K      S   +IG  
Sbjct: 86  NKVAIVSEIEFASEFTNATIIGITGSNGKTT----VTRWTHHILKEGGLNASVGGNIGDS 141

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                     +  + EL    L +I+      RPHIA+IT I P HL  +
Sbjct: 142 FAKQVALSPSENYVLELSSFQLDDIKNF----RPHIAIITNITPDHLDRY 187


>gi|57242128|ref|ZP_00370068.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
 gi|57017320|gb|EAL54101.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFEL 167
           TII IT S GKT+ K  L   L     T+    S N  +G+   +   +  +    I E 
Sbjct: 158 TIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTLMGIVKDINENLQENTQIYIAEA 217

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           G    G+I  L+  + P I +I  I  AHL  F  IE     K E
Sbjct: 218 GARVKGDILELSSFLEPQICIIGEIGGAHLEYFKNIENTRETKLE 262


>gi|326388919|ref|ZP_08210501.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206519|gb|EGD57354.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 474

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 141/360 (39%), Gaps = 55/360 (15%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA++    IPV    ++L  L +L            +A+ G+ GKTTT  M+   L
Sbjct: 81  NPEVVAAL-EARIPVVRRAEMLAELMRLK---------NTVAVAGTHGKTTTTSMVACLL 130

Query: 131 SS--IKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            +  I  T      I SY ++       AR+  D D+ + E   S    +R         
Sbjct: 131 DAGGIDPTVINGGIINSYGSN-------ARLG-DSDWMVVEADESDGSFLRL-----DGT 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P HL ++   + + +A  E  E +   G   L  D     +++A    +  +
Sbjct: 178 IAVVTNIDPEHLDHYGSFDRVKAAFVEFIENVPFYGAAMLCID---HPVVQAIIPMVRDR 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------MEVVHHGIGYHMAQNMLMT 299
            + ++G S  +D +          +     L+ +        ++V    G H  QN L  
Sbjct: 235 RVITYGFSAQSDVRGEAVIPVPGGNRFTAVLRQRDGTFHRIEDIVLPMPGRHNVQNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           + +   +    D      + F   + R  K     ++ G  T+ID+ Y  +P  ++A ++
Sbjct: 295 IAVAREMGVADDVIRDGFAKFGGVKRRFTKVGEIEVDGGLVTVIDD-YGHHPVEIRAVLA 353

Query: 359 ---------VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSG 408
                    V++ + PH    R   L D  E  E   +FH  D+  V  +Y      + G
Sbjct: 354 AAREGARGRVIAVVQPH----RFTRLRDHME--EFQSAFHDADVVFVTPVYAAGEAPIEG 407


>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 241 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPNESVNVTMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|229117409|ref|ZP_04246785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
 gi|228666019|gb|EEL21485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 25/260 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGRKHPIIAG---NIGTVACEVAQDAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IAV   +  AHL      +E   AKA IF+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K I+S  K +N D        C + + +    +G+ +  V
Sbjct: 222 INADDA--DVMALSAYSKGQKIIFSTAK-ENED------GACIKDNAL--YFKGEKVVEV 270

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINNRKFY--- 327

Query: 343 DESYNANPASMKAAISVLSQ 362
           ++S   N  + + A+S  +Q
Sbjct: 328 NDSKATNMLATEKALSAFTQ 347


>gi|56412401|ref|YP_149476.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361337|ref|YP_002140972.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|59798120|sp|Q5PDC7|MURC_SALPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620429|sp|B5BLC3|MURC_SALPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56126658|gb|AAV76164.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092812|emb|CAR58238.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae 2603V/R]
 gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 2603V/R]
          Length = 484

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V  TD  A      IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITAGLSFYVSETDYGA-----DIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLIMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|317129971|ref|YP_004096253.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
 gi|315474919|gb|ADU31522.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 105/265 (39%), Gaps = 36/265 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L   L   K T   IG             +   D ++ +FE  
Sbjct: 102 TSIAVTGSHGKTSTTGLLAHVLQEAKPTSYLIGD---------GTGKGEKDSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   +  H +   P  A++T I   H   FSG++++  A  E+   ++    I   
Sbjct: 152 ------CEYRRHFLHYSPDYAIMTNIDFDHPDYFSGVQDVFDAFQEM--AMQVKKGIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD++ + L A+     +  +Y +G ++  DF  +  +     +  +V ++         
Sbjct: 204 GDDNYLQQLNAQ-----VPVVY-YGFNEEHDFCGKNIRSDENGTHFDVYVRSSFYGSFTI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLID 343
            G G H   N L  + +      D++     L  F    G  +R+   L  NQ    LID
Sbjct: 258 PGYGKHNVLNALAVIALCKYEEVDINIIQSRLITF---SGVKRRFSEKLVGNQ---VLID 311

Query: 344 ESYNANPASMKAAISVLSQISPHGE 368
           + Y  +P  +   I    +  P+ E
Sbjct: 312 D-YAHHPTEIAVTIDATRKKYPNRE 335


>gi|60390567|sp|Q899G5|MURD_CLOTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 458

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 33/205 (16%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIF 165
           A +  ITGS GKTTT    T  + +I KT         +IG PL   +  +  D D  + 
Sbjct: 117 AKLFCITGSDGKTTT----TTLIYNILKTEGYTVWVGGNIGNPLFTKIEEIKKD-DKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRP-HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I+       P  +A++T ++P HL     +EE   AK  IF+   +   + 
Sbjct: 172 ELSSFQLMSIK------EPIEVALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQRENDLLV 225

Query: 225 LNYDD----SFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +N D+    S  E  + +     +K     G    N D  + + K C   +  EV+L+  
Sbjct: 226 INEDNKITKSMEEECRGRLLKFSMKEKLKEGSFYYNEDLYINEKKVC---NVSEVKLK-- 280

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVS 304
                    G H  +N+L     VS
Sbjct: 281 ---------GMHNVENLLAAFSCVS 296


>gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
           Ejp617]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 27/257 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + K          +IG+P LTL + P  +   +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGWQVGTGGNIGLPALTLLQQPAQLY--V 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T  +    A I  +   H+  +  G+++  +AK  I+   E     
Sbjct: 157 LELSSFQLET----TSSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIY---ENATVC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    ++            SFG +   D+ L + +Q S  +W+ VQ +      
Sbjct: 210 VVNADDAMTMPVRGAD-----ARCVSFG-ADVGDYHLTR-QQGS--TWLRVQGEKVLNTD 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H +G H   N L  L +   +     T++KAL+ F+   G   R++          I+
Sbjct: 261 EMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFN---GLPHRFQRVHEHNGVRWIN 317

Query: 344 ESYNANPASMKAAISVL 360
           +S   N  S +AA++ L
Sbjct: 318 DSKATNVGSTEAALNGL 334


>gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
 gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 499

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 26/181 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGS------Y 143
           L  L++    A +  ++ ++A+ G+ GK+TT  M+++    +  + ++A +G+       
Sbjct: 112 LRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQLGAQPSFA-VGTVIAGRGM 170

Query: 144 NNHIGV--PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           N H+G   P ++     D   G F         +R+     RP IAV+T + P HL  + 
Sbjct: 171 NAHLGAQGPGSIFVAEADESDGSF---------VRY-----RPAIAVVTNVEPDHLDFYE 216

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +  A       L   G +    DD+    L A+S A G+  + ++G+S +AD ++ 
Sbjct: 217 TDERVFEAFNRFVGSLAPNGVVVTCADDAGAADLAARSRAAGVPVV-TYGESADADLRIS 275

Query: 262 K 262
           +
Sbjct: 276 E 276


>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
 gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
          Length = 488

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 155/377 (41%), Gaps = 48/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I +DSR +     F  IKG   DGHDF   AV +GA  VV    +     +L +PV 
Sbjct: 23  ITSIEMDSREVKQGSLFVCIKGFTVDGHDFAEQAVARGAVAVVAEKPL-----ALPVPVI 77

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D   AL  LA A   +   +  +I +TG+ GKTTT  ++        K    IG+ N
Sbjct: 78  YVNDSRRALAVLADAFYGQPTHQLHLIGVTGTNGKTTTTHLIERICRHAGKKTGLIGTIN 137

Query: 145 NHIG---------VPLTLA-----RMPVDVDFGIFELGMS----HLGEIRFLTHLVRPHI 186
             IG          P +L      R  VD    I  + +S    H+G +    H     +
Sbjct: 138 MKIGDDTYDVKNTTPESLVLQNMFRKMVDAHVDIVAMEVSSHALHMGRV----HGCDFDV 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSH 240
           AV T +   HL     +E    +K  +F  L      ++     LN DD+  E  K  + 
Sbjct: 194 AVFTNLTQDHLDYHRTMEHYRWSKGLLFAQLGNRFDHQRPKFAILNADDAASEEYKKSTA 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T+ ++G    +D   ++ +  +  +  ++    ++++V    IG     N+L  +
Sbjct: 254 A----TVVTYGIHHKSDIMAKQIEITTSGTTFQLITPIETVQVKTKLIGMFNVYNLLAAV 309

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISV 359
               +    + T ++A++     EG   R+      Q F  ++D  Y   P S++   +V
Sbjct: 310 AACLVSNIPLSTIVEAIADI---EGVPGRFEVVDAGQPFTVIVD--YAHTPDSLE---NV 361

Query: 360 LSQISPHGEGRRIAVLG 376
           L  I    + R   V+G
Sbjct: 362 LQTIRQFAKKRVFVVVG 378


>gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
 gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
          Length = 494

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 20/160 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSI--KKTYAC---IGSYNNHIGVPLTLARMPVDVDFGI 164
           ++A+ G+ GK+TT  M+ + L  +    ++A    I  Y ++       AR+    +   
Sbjct: 130 VVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSN-------ARLGATGEGSW 182

Query: 165 F--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           F  E   S    +R+     +P IAV+T + P HL  +   E +  A       +   G 
Sbjct: 183 FVAEADESDGSFVRY-----QPAIAVVTNVEPDHLDFYETPERVYEAFNRFVASMVPGGV 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +   +DD     L  ++   GI+ + ++G+S  AD ++ +
Sbjct: 238 LVTCWDDEGARALAERARDAGIEVV-TYGQSTEADLRVSR 276


>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
 gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S A  + ITGS GKTTT  MLT  +    + Y  I     +IG V   +A++  + +  +
Sbjct: 110 SAAPFVGITGSNGKTTTT-MLTFEMLKEGQKYPVIAG---NIGTVACEVAQLAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA IF+   +T    
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETDYSI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +N DD+  +++   +++ G K ++S  K
Sbjct: 222 INADDA--DVMALSAYSKGKKVLFSATK 247


>gi|331681476|ref|ZP_08382113.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
 gi|331081697|gb|EGI52858.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D    ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDKAILRALESF---QGTGRRF 328


>gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
 gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
          Length = 535

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P   +  I  DSR       + A +G H DG DF+ +A++KGA  VV  TD + S    
Sbjct: 31  LPDIEITSIRHDSRVCDQGSIYCAFRGLHEDGIDFMDNALEKGAAAVV--TDRLPSRPHE 88

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126
            +P   V+    A   L  +      S   +I +TG+ GK+TT E L
Sbjct: 89  GVPYIVVEAPRQAYALLCGSFFGNPASALKVIGVTGTDGKSTTIEYL 135


>gi|302541868|ref|ZP_07294210.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459486|gb|EFL22579.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 485

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ML ++L ++    +Y   G  +     P + A      + G  E+ 
Sbjct: 115 IAVAGTHGKTTTTSMLAVSLRTLGLDPSYVIGGDLD----APGSSA------EHGGGEIF 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           ++   E     H   P +A+I  +   H +N++ ++EI  +     E +   GT+ ++ D
Sbjct: 165 VAEADESDRSFHKYAPEVAIILNVELDHHANYASMDEIYDSFRTFVERVRPGGTLVISAD 224

Query: 229 -DSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            D   EL    +   G++ + ++G++ +AD ++
Sbjct: 225 HDGARELTAQLAGREGLR-VLTYGEAADADVRV 256


>gi|240950384|ref|ZP_04754647.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
 gi|240295098|gb|EER45930.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)

Query: 56  FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +  +GA +VV ++ +      VA+     IPV      +     LA   R R  
Sbjct: 67  FIGHQAENIEGASVVVASSAIDESNPEVAAAKEARIPV------IQRAQMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IAI G+ GKTTT  M+++  +   +  T+   G       N H+G    L       
Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKSAGKNAHLGASRYL------- 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
                 +  +   +  FL HL +P ++V+T I P H+  + G  E++          L  
Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278
            G   +  DD   E +   +  +G + + S+G S+ AD+++  ++Q   Q  +  V   G
Sbjct: 223 YGLAVMCADD---ETVMEIAPKVG-RQVISYGFSEKADYRIEDYQQTGFQGHYTVVCPTG 278

Query: 279 KSMEVVHHGIGYH 291
           + +EV+ +  G H
Sbjct: 279 ERIEVLLNVPGRH 291


>gi|119953594|ref|YP_945804.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia turicatae 91E135]
 gi|119862365|gb|AAX18133.1| UDP-N-acetylmuramate--alanine ligase [Borrelia turicatae 91E135]
          Length = 486

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 27/203 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N  ++     L IP+    + +G ++K         K   I + GS GKTTT   L +  
Sbjct: 104 NLSVLLEARELGIPILSYPEFIGKISK---------KYYSIGVAGSHGKTTTAAFLGLLF 154

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIA 187
           +S+  +    +G+     G   +L         G   + ++   E R   H +   P++ 
Sbjct: 155 NSLGLQPNVILGASVKDFGDKSSLV--------GQSNIFIAETCEYR--NHFLHFSPNMI 204

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL--GIK 245
           V+T I   H+  F   E + +   +    L+K G + +N D+    LLK K+  L   IK
Sbjct: 205 VLTNIDYEHVDFFENYEAVENVFLQYINNLKKNGILIINADEV--NLLKIKNRILRKDIK 262

Query: 246 TIYSFGKSKNADFQLRKWKQCSE 268
            ++S G +  ADF++ +++   E
Sbjct: 263 -VFSVGFNSLADFKIERFELIDE 284


>gi|84625260|ref|YP_452632.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575298|ref|YP_001912227.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|109892757|sp|Q2NZB9|MURC_XANOM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892758|sp|Q5GW42|MURC_XANOR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620442|sp|B2SNZ4|MURC_XANOP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84369200|dbj|BAE70358.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188519750|gb|ACD57695.1| UDP-N-acetylmuramate--alanine ligase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    I +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  ++     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGRTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L     T  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPGTIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|227892845|ref|ZP_04010650.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
 gi|227865347|gb|EEJ72768.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 102/261 (39%), Gaps = 32/261 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG      GVP        D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F   ++  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G     DFQ  + ++ +  S   V   GK + +   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFKDTDDFQATQVEKSTTGSKFHVLAHGKDLGQFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D     L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISPH 366
           Y  +P  M+A I    Q  P+
Sbjct: 319 YAHHPTEMRATIQAARQKFPN 339


>gi|218780970|ref|YP_002432288.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
 gi|226711863|sp|B8FBR7|MURC_DESAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218762354|gb|ACL04820.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 167/409 (40%), Gaps = 57/409 (13%)

Query: 63  KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KG  +VVV++ +       AS     IPV    ++L  L +L  +         +AI G+
Sbjct: 63  KGCDVVVVSSAIRQENPETASAREQGIPVIPRAEMLAELMRLKYS---------VAIAGA 113

Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ++   +A   +  T   IG     IG    L         G F +  +   +
Sbjct: 114 HGKTTTTSIVADVLAAGGLDPT-VVIGGKLLSIGSNAKLGH-------GEFIVAEADESD 165

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             FL   + P IAV+T I   H+ ++  ++EI  A A+  + +   G   L  D    + 
Sbjct: 166 GSFLK--MSPSIAVVTNIDREHMDHYKDMDEIKDAFAQFVDKIPFYGLSVLCLDSEPVQD 223

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293
           L    +    K   ++G +  AD Q          S   V+   K +  +   + G H  
Sbjct: 224 LIPFIN----KRYVTYGLTTQADLQAGDVTTEGLTSRFTVRHNKKRLGRITLNLPGLHNV 279

Query: 294 QNMLMTLGI---VSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNAN 349
            N L ++ +   +++   ++  A+++LS  H + E +GK        G   ++D+ Y  +
Sbjct: 280 YNSLASIAVGLELNVPFENIKAALESLSGVHRRLETKGK-------VGGIVVMDD-YGHH 331

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQSFH-IDLAEVLSLYNI 401
           P  ++  +  ++   P    RR+ V+              + ++SF+  D   VL +Y  
Sbjct: 332 PTEIRTTLQAVNDSYPE---RRVGVIFQPHRYSRTQSLFEDFARSFYQADYLVVLPIYPA 388

Query: 402 SHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
               + G   ++L  AL    H H  ++ + +     +  ++ +GDV++
Sbjct: 389 GEKPIPGVDSVSLCKALKAYGHKHVIHAPSKESALQELDKTVREGDVLI 437


>gi|268318240|ref|YP_003291959.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262335774|gb|ACY49571.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 479

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 115/284 (40%), Gaps = 26/284 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++LG L ++            I + G+ GKTTT  M+ + +S         G 
Sbjct: 101 IPLIPRAEMLGELMRMKFG---------IGVAGTHGKTTTTSMVGLVVSE--------GG 143

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           ++  I V   +A    +   G  ++ +    E       + P +AV+T+I P HL  +  
Sbjct: 144 FDPTIIVGGKVAAFESNAVAGEGDIIVIEADEYDRTFLRLTPTLAVVTSIEPEHLDIYRD 203

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++++ +A  +    +   G   L  DD   + L  +      + + ++G ++ A+ +   
Sbjct: 204 LDDLMAAFRQFASSVPFFGAAILCLDDPNVQALVGQLD----RRVRTYGLARQAEIRAEN 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +     S  +V LQG+ +  +   + G H  +N L  + +   L    +     L+ F 
Sbjct: 260 VQFEGFGSRFDVLLQGEPLGTIQLQVPGLHNVRNALAAVAVGLELDIPFEAIQAGLARFT 319

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               R +R    L +    L+ + Y  +P  ++A +   +   P
Sbjct: 320 GVRRRFER----LGEVHGVLVIDDYAHHPTEIRATLEAAATAMP 359


>gi|229086477|ref|ZP_04218649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
 gi|228696794|gb|EEL49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           SKA  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SKAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQTAKENEIVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      EE   AKA IF+   K     
Sbjct: 166 TELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTKADYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +N DD+  +++    ++ G K ++S  K
Sbjct: 222 INADDA--DVMALSENSKGQKVLFSATK 247


>gi|167856479|ref|ZP_02479196.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
 gi|167852402|gb|EDS23699.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)

Query: 56  FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +  +GA +VV ++ +      VA+     IPV      +     LA   R R  
Sbjct: 67  FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPV------IQRAQMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IAI G+ GKTTT  M+++  +   +  T+   G       N H+G    L       
Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKSAGKNAHLGASRYL------- 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
                 +  +   +  FL HL +P ++V+T I P H+  + G  E++          L  
Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278
            G   +  DD   E +   +  +G + + S+G S+ AD+++  ++Q   Q  +  V   G
Sbjct: 223 YGLAVMCADD---ETVMEIAPKVG-RQVISYGFSEKADYRIEDYQQTGFQGHYTVVCPTG 278

Query: 279 KSMEVVHHGIGYH 291
           + +EV+ +  G H
Sbjct: 279 ERIEVLLNVPGRH 291


>gi|229184422|ref|ZP_04311629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228599218|gb|EEK56831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
          Length = 124

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 17/100 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++G+ IDS++I     F  I     DGH+++  ++  GA         VAS+   S    
Sbjct: 33  IHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDNGA---------VASLWKKSYGTP 82

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              +P+  VDD L AL +LA   R      +I ITGS+ K
Sbjct: 83  PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSMAK 122


>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122251657|sp|Q01Q46|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           K   I ITGS GKTTT  +       I +          +IG+P+T +     D  + + 
Sbjct: 101 KGRTIGITGSNGKTTTTSLT----GHILREAGVPVQVGGNIGLPVTAMVESSRDDGWNVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I    H  R HI +   +   HL      E  A+ K  +FE  +      L
Sbjct: 157 ELSSFQLETI----HEFRAHIGLALNVTQNHLDRHHTFENYAAIKGRLFETQQAGDYAVL 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           N +D       A++ A    T+  F   K  D
Sbjct: 213 NAEDPVCVAYAARTRA----TVQWFSSRKKVD 240


>gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii
           DSM 519]
 gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii]
          Length = 516

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 12/105 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+  S  +   + FF IKG   DGH ++L A  KGA   VV +       ++ IP +
Sbjct: 26  IQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNKGAVGAVVESIQ----DNIDIPQY 81

Query: 87  GVDDVLGALNKLAVAA----RLRSK-ATIIAITGSVGKTTTKEML 126
            V D   A + LA+ A       SK   +I IT + GKTTT  M+
Sbjct: 82  LVSD---ARHSLALCACNFYNHPSKFMKMIGITATNGKTTTAFMI 123


>gi|307328984|ref|ZP_07608152.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
 gi|306885346|gb|EFN16364.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
          Length = 474

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 27/303 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ML ++L +  +  +Y   G  +     P + AR       G  E+ 
Sbjct: 115 IAVAGTHGKTTTTSMLAVSLRTLGLDPSYVIGGDLD----APGSSAR------HGDGEIF 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
           ++   E     H   P +A+I  +   H +N++ ++EI  A  E F G +   G + ++ 
Sbjct: 165 VAEADESDRSFHKYAPEVAIILNVELDHHANYASMDEI-YASFETFVGRIRSGGALVISA 223

Query: 228 DDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSME 282
           D S    L A+ S       + ++G+ ++AD ++   +     S + V+L     G  + 
Sbjct: 224 DQSGARELTARVSGGEEPPRVLTYGEDESADVRVLAIEPHGLTSEVTVRLAESLGGAEIT 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H A N +  L   + L         AL+ +    G  +R +         +I
Sbjct: 284 FTVSVPGRHYALNAVAALTAGAALGVPAGELAPALASY---TGVKRRLQLKGTAAGVQVI 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D SY  +P  + A +  +   +  GEGR + V      +   +Q    ++ E L+L + S
Sbjct: 341 D-SYAHHPTEIAADLEAIRGGA--GEGRVLVVF--QPHLFSRTQELGTEMGEALALADAS 395

Query: 403 HVW 405
            V 
Sbjct: 396 VVL 398


>gi|16759124|ref|NP_454741.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140674|ref|NP_804016.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194445444|ref|YP_002039361.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247646|ref|YP_002145115.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242404|ref|YP_002214081.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855643|ref|YP_002242294.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213052847|ref|ZP_03345725.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426154|ref|ZP_03358904.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213621331|ref|ZP_03374114.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|238911186|ref|ZP_04655023.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823733|ref|ZP_06543345.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20532168|sp|Q8Z9G8|MURC_SALTI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706327|sp|B5F7W5|MURC_SALA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706328|sp|B5FI73|MURC_SALDC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706329|sp|B5R2M5|MURC_SALEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620428|sp|B4SU51|MURC_SALNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293609|pir||AF0518 UDP-N-acetylmuramate,alanine ligase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501414|emb|CAD01286.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136298|gb|AAO67865.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194404107|gb|ACF64329.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197211349|gb|ACH48746.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197936920|gb|ACH74253.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707446|emb|CAR31719.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621825|gb|EGE28170.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
 gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 34/255 (13%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P   + G++ D+R + P   F A+ G    G  ++  A+Q GA  VV +       G+ 
Sbjct: 23  LPAASIQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVVWDPQDEVDPGAA 82

Query: 82  -------SIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIAL 130
                   +P+ GV  +   L   A+A RL    +    +IA+TG+ GKT+    +   L
Sbjct: 83  RTATEQSGVPMVGVPGLRRHLG--AIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLL 140

Query: 131 SSIKKTYACIGSYNNHI------GVPLT---------LARMPVDVDFGIFELGMSH-LGE 174
           S  +  +  +G+  + +      GV  T         LA        G+     SH L +
Sbjct: 141 SGPEAPWGVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALEQ 200

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R     V   +AV+T +   HL     +E  A AK+ +FE         LN DD+    
Sbjct: 201 GRLAGTAV--DLAVLTHLGRDHLDYHGSVEAYADAKSRLFE-FPSLRAQVLNLDDALGRR 257

Query: 235 LKAKSHALGIKTIYS 249
           L  +  A G    YS
Sbjct: 258 LHDR--AAGAAFTYS 270


>gi|325518027|gb|EGC97835.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. TJI49]
          Length = 465

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 30/271 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
           DD +  +++   S     K +  +G S +A  Q+R     +    M    ++ +   + V
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDA--QVRAENVDARDGRMHFTVIRERRAPLAV 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTL 341
           V +  G H  QN L  + I + L    D   +AL+ F+    R +RY    + + G +TL
Sbjct: 271 VLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGHYTL 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRI 372
           ID+ Y  +P  M A I+      P   GRR+
Sbjct: 331 IDD-YGHHPVEMAATIAAARGAFP---GRRL 357


>gi|239623059|ref|ZP_04666090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239522426|gb|EEQ62292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-F 165
           +  II ITG+ GK+T   +L   L +       +G+    IG+P       V  D  I F
Sbjct: 106 RDQIIGITGTKGKSTVTSLLYHILKNAGMDTMILGN----IGIPALDHMEEVRPDTKIVF 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L    ++T  V PHI ++  I   HL ++  +E+  +AK  IF+  +KT  I +
Sbjct: 162 ELSCHQL---EYMT--VSPHIGILVNIHEEHLDHYGTMEKYVAAKQNIFKN-QKTDDILI 215


>gi|146305955|ref|YP_001186420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina ymp]
 gi|145574156|gb|ABP83688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           mendocina ymp]
          Length = 448

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AITGS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLADDVELYVL 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           N DD+    L A        T + FG  K  DF+
Sbjct: 215 NRDDALSRPLIADQ-----VTCWEFGLGK-PDFK 242


>gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 148/386 (38%), Gaps = 51/386 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           ++    +IA++G+ GKTTT  M+   L  ++      +G++   +G              
Sbjct: 98  MKDYKNVIAVSGTHGKTTTTSMIGYILKKALLNPTVLVGAFVKQLG-------------- 143

Query: 163 GIFELGMSHLGEIRFLTHL-----VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           G F +G S    +    ++       P I VI  I   HL  F  IE I  +  +    +
Sbjct: 144 GNFCIGSSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKI 203

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            + G I  N DD   E + + +  L    IY   K+K ADF       C+   + E  + 
Sbjct: 204 PQNGFIVANLDD---ENVYSVASYLKQNVIYFSTKTK-ADFWADNITSCN--GYYEFDVV 257

Query: 278 GKSMEVVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            K  + + H      G+H   N L    +   L  D +T  +A+  F    G  +R    
Sbjct: 258 NKDFKHLCHIKLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEFC---GASRRLEKL 314

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGEL 384
                  L D+ Y  +P  ++A +  L +++         PH   R  +++    +   L
Sbjct: 315 GKIDGIVLYDD-YAHHPTEIEATLRTLKKLAKEKVIVIFQPHTFSRLKSLMEGFVKSLSL 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVD 443
           +     D   V  +Y      + G     L + L ++ +   Y +  + +  ++ ++   
Sbjct: 374 A-----DKVIVTDVYAAREKNVYGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQK 428

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GD+V    +      + I L+L++ P
Sbjct: 429 GDIVATIGAGDVN--KCIELILDKSP 452


>gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
 gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
          Length = 497

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 32/232 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++  S  + P + + A+ G    G +F+  A   GA  V+ +           +P  
Sbjct: 25  VTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAAAGAVAVLTDAAGAELAAGYGLPTL 84

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L  LA A       K T+I +TG+ GKT+T  ++   L +   T   IG+  
Sbjct: 85  VVADPRAVLGTLASAVYGDPTEKLTVIGVTGTAGKTSTAYLVESGLRAAGHTTGLIGTVE 144

Query: 145 NHIG--VPLTLARMPVDVDF----------GI---------FELGMSHLGEIRFLTHLVR 183
             +G  V  ++   P   D           G+           L M  +G +RF      
Sbjct: 145 TRLGDLVLDSVRTTPEATDLHAMLAAALERGVTAVVMEVSSHALAMGRVGGVRF------ 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             +   T     HL   +  ++  +AKA +F+G  +     LN+DD   + L
Sbjct: 199 -DVGGWTNFGSDHLDFHADADDYFAAKARLFDG--RCAHEVLNHDDPALKAL 247


>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 142/352 (40%), Gaps = 49/352 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            +K  II+ITG+ GK+T   M+  IA  S  K +        +IG P+ L  +    +  
Sbjct: 103 ETKCPIISITGTNGKSTVATMVKKIAEKSGYKVFL-----GGNIGFPV-LEMLNQKANLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++  IAV+  I   HL  +  G E+    K  I+   E    
Sbjct: 157 ILELSSFQLET----TFSLKSKIAVVLNITEDHLDRYPEGFEQYKKIKLSIYNQAEICLI 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                    F+           K   SFG  +N ++ +   K+       +  L  K+ +
Sbjct: 213 KLKKGGKKPFD--------TQFKKYISFGICQNNNYHINYEKE-------KAILYCKNKK 257

Query: 283 VVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           V+        GYH  +N L++L I   +  + + AI  L  F    G   R++       
Sbjct: 258 VLDTSNMFLNGYHNYENALISLAISDAMKFNREIAINTLKQF---SGLPHRFQTVHINNN 314

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            + I++S + N  S K A+  L     + +G    +LG   +    S +F+I L E    
Sbjct: 315 ISWINDSKSTNVDSTKVALQNL-----NIKGTIWLLLGGDGK----SSNFNI-LKEYFEK 364

Query: 399 YNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             I  ++  G   L+L K    +S++V   ET+    + I   +  GDVV++
Sbjct: 365 LKI-KIYCFGKDGLSLSKLCKKKSVYV---ETLKQAIILISKKIQPGDVVLL 412


>gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
 gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 148/381 (38%), Gaps = 54/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+       +   L +P  
Sbjct: 18  VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEP---PAPDGLPVPAD 74

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 75  AI-AVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 134 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 189

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237
             +AV T +   HL     + +  +AKA++F   GL+      +N DD F    F  L  
Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDGFGRTLFAALDP 246

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQN 295
              A+G+ +        +AD  +       + + +   L  QG+   V    +G     N
Sbjct: 247 ALRAIGVSS------RAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDN 300

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L   G +  +          L    P  GR  R   A       L+   Y   P +++ 
Sbjct: 301 LLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQ 357

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A+S L     H + R I V G
Sbjct: 358 ALSSLRS---HAQDRLICVFG 375


>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 23/255 (9%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +V  I    IP++G         +L +A +  S+  + AITG+ GKTTT  ++   L S 
Sbjct: 83  LVKRIRGAKIPIWG---------ELELAYQ-SSRGKLAAITGTNGKTTTVSLVGEILRSH 132

Query: 134 KKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                 +G    +IG P T   +   D    + E+    L  I       RP ++ IT I
Sbjct: 133 FSDTHVVG----NIGNPFTAEALETEDSSATVIEVSSFQLETIMDF----RPDVSAITNI 184

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFG 251
            P HL     ++     K  I     +   + LN++D        K   L  K + +S  
Sbjct: 185 TPDHLDRHKSMKNYIRIKESIAMNQTEEDCVVLNHEDPELRSF-GKGKELKPKVLWFSSE 243

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +     F LRK      ++  E +   K  E+    +G H  +N++  + +   +   + 
Sbjct: 244 RELKEGFFLRKDALFFREAGKEAEELLKVREL--KLLGKHNYENVMCAMAVSYRMGVPMR 301

Query: 312 TAIKALSVFHPKEGR 326
             I     F P E R
Sbjct: 302 KIISVCKSFRPVEHR 316


>gi|294635007|ref|ZP_06713524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
 gi|291091606|gb|EFE24167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  +            +IGVP LTL +   +    +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAHAAGWPVGVGGNIGVPALTLLKQ--ECRLYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      TH ++   A I  ++  H++ +  G+++  +AK  I+   E+    
Sbjct: 157 LELSSFQLET----THSLKAAAATILNVSEDHMNRYPLGLQQYRAAKLRIY---EQARAC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    L    H    + + SFG     D+ L + +    + W+ V+    L   
Sbjct: 210 VVNADDA----LTMPIHGADARCV-SFGVDV-GDYHLNRQQG---EIWLRVRGEKILNTS 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +   +     ++++AL+ F    G   R++  L+    
Sbjct: 261 EMQLT----GMHNYTNALAALALADAVGLPRASSLRALTTFR---GLAHRFQLVLDHNGV 313

Query: 340 TLIDESYNANPASMKAAISVL 360
             I++S   N  S +AA+  L
Sbjct: 314 RWINDSKATNVGSTEAALKGL 334


>gi|166710653|ref|ZP_02241860.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ +    I +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  ++     + + S+G S+NAD +     Q   +    ++L +G +  V   
Sbjct: 228 DDPEVAALAGRTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTATPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342
             G H   N L    I   L     T  +AL  F    G G+R+        + G    +
Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPGTIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 VDDYGHHPRELEA 353


>gi|28209980|ref|NP_780924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           tetani E88]
 gi|28202415|gb|AAO34861.1| UDP-N-acetylmuramoylalanine-d-glutamate ligase [Clostridium tetani
           E88]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 33/205 (16%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIF 165
           A +  ITGS GKTTT    T  + +I KT         +IG PL   +  +  D D  + 
Sbjct: 123 AKLFCITGSDGKTTT----TTLIYNILKTEGYTVWVGGNIGNPLFTKIEEIKKD-DKVVL 177

Query: 166 ELGMSHLGEIRFLTHLVRP-HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I+       P  +A++T ++P HL     +EE   AK  IF+   +   + 
Sbjct: 178 ELSSFQLMSIK------EPIEVALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQRENDLLV 231

Query: 225 LNYDD----SFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +N D+    S  E  + +     +K     G    N D  + + K C   +  EV+L+  
Sbjct: 232 INEDNKITKSMEEECRGRLLKFSMKEKLKEGSFYYNEDLYINEKKVC---NVSEVKLK-- 286

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVS 304
                    G H  +N+L     VS
Sbjct: 287 ---------GMHNVENLLAAFSCVS 302


>gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
 gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
          Length = 564

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 152/393 (38%), Gaps = 53/393 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85
           V+ I  DSR +     FFA  G H DG  +I  A+  GA  +V   ++ + + G   + V
Sbjct: 64  VSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQNELPSYAAGVCYVRV 123

Query: 86  FGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGS 142
             V  V+ A   +A      SK   +I +TG+ GK++T   +   + L+  +  +    S
Sbjct: 124 REVRAVMSAF--VAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLLRLAHKRAGFFSTVS 181

Query: 143 YN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186
           Y+                 + V   LA M  +  +F + E     L  +    + V    
Sbjct: 182 YSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGLSPLTARLNDVCFDA 241

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----------FLNYDDS----FF 232
            +   +   HL      E+    KA +F  L++   I           +N DD     F+
Sbjct: 242 GIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVPSFGVVNADDPSAEYFY 301

Query: 233 ELLKAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--- 287
              K   ++  + T    +F K++         K+ S     ++   GKS E +H     
Sbjct: 302 AATKQPCYSFSVNTAKKTAFLKNELQGVIAVNIKEDSNGIQFDIFESGKS-ESIHARAPL 360

Query: 288 IGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDE 344
            G    QN+  + L + SIL   +   I  L    P  GR     C + +G  F  LID 
Sbjct: 361 AGLFNVQNLCASLLTVSSILQKPLAELIPLLQKLEPITGR----MCKIQEGQPFEVLID- 415

Query: 345 SYNANPASMKAAI-SVLSQISPHGEGRRIAVLG 376
            Y   P+S +  +  +  +I+  G G+ I V G
Sbjct: 416 -YAHTPSSFQMLMPPIKDRIAKQG-GKLIVVFG 446


>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
 gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 157/383 (40%), Gaps = 47/383 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSL---- 81
           + G + DSR I     F AIKG   DGH +I  A+   A +++  NT     I  L    
Sbjct: 28  IKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESAINNKASIIIYDNTADKEFIKKLQDNH 87

Query: 82  -SIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             +    V +    L    ++A+L      K   I ITG+ GKTTT  +L   L + K  
Sbjct: 88  KDVHFVAVKNPRECL--AYISAKLFYEPTKKINTIGITGTNGKTTTTYLLKSVLEANKNK 145

Query: 137 YACIGSYNNHIGVPLTLARM--PVDVDF-GIFE----LGMSH-----------LGEIRFL 178
              IG+  N IG       +  P  +D   IF+     G+SH           +    +L
Sbjct: 146 TTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKSLKKGISHIVMESSSQALAMNRCDYL 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----FLNYDDSFFEL 234
            +      A+ T I   HL     ++    AK ++F  L+++        +N D   F+ 
Sbjct: 206 NY----DTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLLKESSKKKKLAIVNIDTDNFKQ 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMA 293
           +      LGIK + ++G ++ AD+  +     S+ +  E   +GK +  V    +G    
Sbjct: 262 ISNYIKKLGIKMV-TYGINEKADYYGKVISLNSKNTEYEFYAKGKLISKVKLSMLGRFNI 320

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  V     D++ +IKA+      EG   R+     +    ++   Y+  P S+
Sbjct: 321 LNSLSILAYVCENKLDIEKSIKAMRKVQV-EG---RFEIVTKEKHPFIVAVDYSHTPDSL 376

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           +  +    +++P+   R IAV G
Sbjct: 377 ENILVEAKKLNPN---RVIAVFG 396


>gi|224581972|ref|YP_002635770.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254766020|sp|C0Q5I7|MURC_SALPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|224466499|gb|ACN44329.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|205351468|ref|YP_002225269.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226706330|sp|B5RH65|MURC_SALG2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|205271249|emb|CAR36037.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626495|gb|EGE32838.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|77460893|ref|YP_350400.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
 gi|109892724|sp|Q3K745|MURC_PSEPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77384896|gb|ABA76409.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 486

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 28/259 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q   Q++  V +   + ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTVTYGFSEDADVRAINVRQQGMQTFFTVLRPDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATICIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 340

Query: 342 IDESYNANPASMKAAISVL 360
           +D+ Y  +P  + A I  +
Sbjct: 341 VDD-YGHHPTEVAAVIKAV 358


>gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
 gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT+
Sbjct: 81  -----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTS 125


>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae Rd KW20]
 gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
 gi|1171072|sp|P45063|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
           influenzae Rd KW20]
 gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+    K G   LN +D
Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                              +FG+++N       + + S   W++ +  GK   +V     
Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D+   AL  F   +G   R++        
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +      L+ F           S   +  +TM+    F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGALLAKF-----------SSQSYLFDTMEQAIEFLRPTLQSGDMVLL 409


>gi|167856476|ref|ZP_02479193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
 gi|167852399|gb|EDS23696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
          Length = 432

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITGS GK+T   + T+     K+    +G   N IGVP  L+ +  D +  +
Sbjct: 103 EAKAPIIAITGSNGKST---VTTLTTEMAKQAGVKVGMGGN-IGVP-ALSLLKGDYELYV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            EL    L      T+ ++   A I  I+  H+  +  IE+   AK +I+
Sbjct: 158 LELSSFQLE----TTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIY 203


>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9515]
 gi|158512733|sp|A2BY75|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 23/216 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VLG +N   +A         I ITG+ GKTT    +T  LS I +T   +  +  +IG 
Sbjct: 105 EVLGEVN---IAWESLKNINWIGITGTNGKTT----VTHLLSHILRTNNLLAPFAGNIGT 157

Query: 150 PLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           PL      +   ++D+ + EL      +I   T  ++P I + TT    HL     ++  
Sbjct: 158 PLCKIAYSIKSKNIDWLVAELSSY---QIEIATLCIKPKIGIWTTFTADHLDRHKTLDNY 214

Query: 207 ASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K  +   L+++     NYDD    E  K+ S  + I T      SK +D     +  
Sbjct: 215 FKIKNSL---LKQSEFRIYNYDDIHLRENFKSLSKGIWITT-----SSKQSDLDHCDYWI 266

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +E   +E Q    S++      G H  QN+L+ + 
Sbjct: 267 NNEDFIVERQENLLSLKNFKLK-GNHNTQNLLLAIA 301


>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya zeae Ech1591]
 gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
          Length = 494

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 29/231 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D     G+L+
Sbjct: 18  PERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVAQADEATPDGTLT 77

Query: 83  ----IPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               +PV  +DD+   L   A+A R      S   ++ +TG+ GKTTT ++L     ++ 
Sbjct: 78  EMHGVPVIYLDDL--NLRLSALAGRFYRQPSSSLQLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 135 KTYACIGSYNN----HIGVPLTLARMPVDV------------DFGIFELGMSHLGEIRFL 178
           KT A +G+  N    H+          VDV            +F   E+  SH G ++  
Sbjct: 136 KTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAMEVS-SH-GLVQHR 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +    AV T ++  HL     +    +AK  +F    + G   +N DD
Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLF-AEHQVGQKIINADD 243


>gi|62178696|ref|YP_215113.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565665|sp|Q57TC9|MURC_SALCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|62126329|gb|AAX64032.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713149|gb|EFZ04720.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGSQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRF 328


>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 441

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 19/232 (8%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG    +IGV +      
Sbjct: 88  LELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIG----NIGVGMLWEIYN 143

Query: 158 VDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            D D + + E     L      T   +P  + I  I P H+     ++   +AK  + + 
Sbjct: 144 SDKDTYFVIECSSFQLES----TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKN 199

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQ 275
            ++     LN DD ++E  K  + A     +Y    SKN    +++     + S +    
Sbjct: 200 QDENCYTVLNADDEYYEECKKFTKA----NVYDISTSKN----VKRGSFIKDNSIYFSDS 251

Query: 276 LQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              K +++ + + IGYH  QN+L  + +  ++  + D+  + L  F   E R
Sbjct: 252 DCDKIIDLKNVNLIGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHR 303


>gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
 gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 27/132 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L               H+G P TLA    ++  G+ ++  
Sbjct: 122 VVAVTGSNGKSTTSALIHHIL--------------EHVGRPATLAG---NIGRGVLDIDP 164

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
            H GE+       + T L R   P +AV T ++  HL    G+    +AK  +F EG   
Sbjct: 165 PHDGEVVVLELSSYQTDLARSLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPD 224

Query: 220 TGTIFLNYDDSF 231
              + ++ D+  
Sbjct: 225 RAIVGVDEDEGL 236


>gi|116750889|ref|YP_847576.1| UDP-N-acetylmuramate--alanine ligase [Syntrophobacter fumaroxidans
           MPOB]
 gi|166224744|sp|A0LNY9|MURC_SYNFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116699953|gb|ABK19141.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 469

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 26/281 (9%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L+ P IAV+T I   HL  +  +  I     +    +   G   L  +D   + +  +  
Sbjct: 171 LLPPTIAVVTNIDLEHLDFYRDLAHIQETFLQFINKIPFYGQAVLCLEDENIQSILPRVE 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
               K   ++G S  ADFQ R  +     S   V   G  +  +   I G H   N L  
Sbjct: 231 ----KRFTTYGFSSQADFQARDVRTSGLFSSYRVHSHGDELGEIEIRIPGRHNVLNSLAA 286

Query: 300 LGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           + +   L    A++   ++ ++      G  +R++         +ID+ Y  +P+ ++A 
Sbjct: 287 VAVARELDLDWANIQDGLRDMT------GVQRRFQIKGEAANVLVIDD-YGHHPSEIRAV 339

Query: 357 ISVLSQISPHGEGRRIAVLG------DMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGF 409
           +  L+   P  + RRI V            M + ++ F H D+  V  +Y  S   + G 
Sbjct: 340 LQTLADCYP--DRRRIVVFQPHRYTRTRALMEQFARCFYHSDVLLVTEIYAASETPIPGV 397

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
               L   +    H  +H+ ET++     +   +  GD V+
Sbjct: 398 TGERLSQEIASHGHHDLHFCETVESALSRLVKLVKPGDAVI 438


>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 454

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++  + P HL+    +E  A+AKA IF        + LN DD     +K  +H+  
Sbjct: 177 PLGAIVLNVTPDHLARHKTMENYAAAKARIFMNQNPENFVVLNDDDPIVRAMKKDAHSKV 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMT 299
           +           A F         E +     L GK+  V+     H  G H  +N+L  
Sbjct: 237 LSISQHHKVDSGAYF---------EGNTCYAVLDGKATPVIDTEHIHIKGSHNIENILAV 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L  +V+     +  FH  E R +R     +  F+   ++S   N  S+  A+  
Sbjct: 288 IALTYALGVEVEHIKHTIEQFHGVEHRLERVTTFHDVTFY---NDSKATNTDSVVKALDA 344

Query: 360 LSQ 362
             +
Sbjct: 345 FDK 347


>gi|261823015|ref|YP_003261121.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium wasabiae
           WPP163]
 gi|261607028|gb|ACX89514.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium wasabiae
           WPP163]
          Length = 486

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    ++ 
Sbjct: 221 LPFYGQAVMCVDDEVIRELLPR---VG-RHIITYGFSDDADVRIAGYRQTGAQGHFTLER 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + K  + V  +  G H A N    + + +    D ++ ++AL  F   +G G+R+
Sbjct: 277 KDKPLLNVTLNAPGRHNALNAAAAVAVATDEGIDDESILRALERF---QGTGRRF 328


>gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae 70585]
 gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae 70585]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|209884384|ref|YP_002288241.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
 gi|209872580|gb|ACI92376.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 30/286 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    IAI G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 115 LAELMRLKS---CIAIAGTHGKTTTTSMVATLLDAGALDPTVINGGIINAYG---TNARL 168

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + ++ + E   S   +  FL   V   +A++T + P HL +F   E +  A     EG
Sbjct: 169 G-EGEWMVVEADES---DGTFLKLPV--DVAIVTNVDPEHLDHFKTFEAVQDAFRHFVEG 222

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D +  + L  +   +  + I ++G++  AD +L   +     S  +V++
Sbjct: 223 VPFYGFAVMCIDHAVVQALVGR---IEDRRIITYGENPQADARLVDLQPFPGGSKFKVEV 279

Query: 277 QGKSMEVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +     H          G H A N    + +   +    +   KAL+ F    G  +R
Sbjct: 280 RHRKAGAAHVIADLVLPMPGRHNALNATAAIAVAHEIGMSDEAIRKALAGFG---GVKRR 336

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +         T+ID+ Y  +P  + A   VL        GR IAV+
Sbjct: 337 FTRTGEWNGVTVIDD-YGHHPVEIAA---VLKAARDTATGRVIAVV 378


>gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 150/396 (37%), Gaps = 79/396 (19%)

Query: 29  GISID-SRSIAPQEAFFA----------IKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           GI++D +  + P  A  A          I G  ++  D     ++KG  ++ VN    AS
Sbjct: 392 GIAVDVTEEVHPDNAQLAVWSAKAIGLDIAGVDFNCEDIKKSYLEKGGAVLEVN----AS 447

Query: 78  IGSLSI---PVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTT-------- 122
            G L +   P  G    +GA     +  RL      +  IIA+TG+ GKTT         
Sbjct: 448 PG-LRMHLRPSTGKQRDVGA----EIVDRLFPEGNGRIPIIAVTGTNGKTTVVRMINKVL 502

Query: 123 -KEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            + M+ + ++S     I       G         + L R P DV   + E   +  G +R
Sbjct: 503 LENMVRVGMTSSEGVFINDKLLVTGDMTGPQSAQIVL-RHP-DVQAAVLE--TARGGILR 558

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF--SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                    +AVIT ++  HL  +    +EE+A  K  + E + K G + LN DD     
Sbjct: 559 AGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKMLVAERVNKYGYVVLNADDPIVAG 618

Query: 235 LKAKSHALGIKTIYSFGKSKNADF----------------QLRKWKQCSEQSWMEVQLQG 278
              ++ A   K IY      N                   Q++  +    Q   ++Q   
Sbjct: 619 FDKRTEA---KVIYFSLDPANRKLCKHIALGGTGIFVDKNQIKLGQGFDVQQICKIQ--- 672

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF--HPKEGRGKRYRCALNQ 336
            ++ +   G   H  +N+L  +G    L        K+L  F    K+  G+     +N 
Sbjct: 673 -NIPLTWSGKAKHNIENILAAIGACWALGYSASQMRKSLKKFGSENKDNYGRLEYYEVN- 730

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           G   ++D  Y  N A +K AIS L QI      RRI
Sbjct: 731 GVTIILD--YAHNCAGLKEAISTLRQIKK----RRI 760


>gi|260767159|ref|ZP_05876102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
 gi|260617833|gb|EEX43009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 38/259 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           +IAITGS GK+T  + LT  +++       +G    +IGVP L L   P   +  + EL 
Sbjct: 110 VIAITGSNGKSTVTD-LTGVMANAAGIATAVGG---NIGVPALDLLAQP--AELYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     L        A    ++  H+  + G+     AK  IFE  +   T  +N D
Sbjct: 164 SFQLETTSSLAL----KAAAFLNLSEDHMDRYDGMAGYRQAKLRIFEHAQ---TAVVNAD 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287
           D+     +    A   +T+  FG  + A+F        ++    EV L    + +     
Sbjct: 217 DT-----QTYPDAYSGRTV-RFGLEQPAEF------TTAQHDGKEVLLANGEVVLPTSDL 264

Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342
             +G H   N+L  L ++     +   A+ AL     K   G  +RC   A NQG    +
Sbjct: 265 SLVGRHNVANVLTVLALLDAAGVNYTNALPAL-----KSYTGLTHRCQVVADNQG-IKWV 318

Query: 343 DESYNANPASMKAAISVLS 361
           ++S   N AS  AA+S L+
Sbjct: 319 NDSKATNVASTLAALSGLT 337


>gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 159/393 (40%), Gaps = 51/393 (12%)

Query: 18  SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           ++G+ P G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +
Sbjct: 10  ALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTD 69

Query: 72  TDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARL---RSKATIIAITGSVGKTT----T 122
               A          G   VL       LA AA L   R  AT++A+TG+ GKT+    T
Sbjct: 70  AAGAALAREALA-GSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFT 128

Query: 123 KEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---S 170
           +++        + I  + ++  +A   ++      P+TL R+  +  + G+    M   S
Sbjct: 129 RQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLAEAAEAGVTHAAMEASS 186

Query: 171 HLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
           H  E R L   HL     A  T     HL      E   +AKA +F   L   GT  +N 
Sbjct: 187 HGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNL 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVH 285
           DD     + A + A   + I   G   +AD  LR   Q  + +  +++   QG+      
Sbjct: 244 DDPRGPEIAALARARAQRVI---GTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARL 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFTLID 343
             IG   A N+ +     S+     D   +  + F   +G RG+    A  + G    +D
Sbjct: 301 PLIGGFQAWNVAVA---ASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVD 357

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++  A+  L    PH  GR + V G
Sbjct: 358 --YAHTPDALATALKAL---RPHVMGRIVVVFG 385


>gi|154245789|ref|YP_001416747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159874|gb|ABS67090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthobacter
           autotrophicus Py2]
          Length = 537

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           ++  IAITG+ GK+TT  ++T  L    +     G+    I   L+LA  P      + E
Sbjct: 126 RSPFIAITGTNGKSTTTALITHILRVAGRDVQMGGNIGTAI---LSLA-PPKPGRVHVVE 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                +     L   + P + V+  I P HL     IE  A+ K  +  G+E  GT  + 
Sbjct: 182 CSSYQVD----LAPSLDPSVGVMLNITPDHLDRHGTIEHYAAVKERLVAGVEGGGTAVVG 237

Query: 227 YDDSF 231
            DD F
Sbjct: 238 VDDDF 242


>gi|325663714|ref|ZP_08152118.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470207|gb|EGC73440.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 158/390 (40%), Gaps = 63/390 (16%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++LG L        + +  T IA++G+ GKTTT  M++  L +        G 
Sbjct: 94  IPMLTRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSMISHILLA--------GD 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200
            +  I V   L  +  ++  G  ++ ++   E    FL  L  P I +I  +   H+  F
Sbjct: 138 TDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFL--PKIGIILNVEEDHMDFF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +++I  +       L   GT+ +N + S +E + A  +      + ++G   +AD+  
Sbjct: 196 KDLDDIRHSFHRFAALLPNDGTLIINSEISQYEQIIAGLNC----NVITYGIHHDADY-- 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI----------GYHMAQNMLMTLGIVSILTADV 310
                 + Q+     +   S +++ HG           G H   N L  +   ++L  D+
Sbjct: 250 ------TAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNVSNALSAIITGTLLGIDL 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-------- 362
           +   K L  F    G  +R+         T+ID+ Y  +P  ++A +S            
Sbjct: 304 EKIKKGLLSF---TGTDRRFEYKGTLDGVTIIDD-YAHHPTEIEATLSAAQHYPHREIWC 359

Query: 363 -ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              PH   R  A   +  +   L+ + H+ LA++ +      + +S     AL DA+ R 
Sbjct: 360 IFQPHTYTRTKAFFHEFAQA--LTLADHVILADIYAARETDTLGMSS---EALSDAI-RE 413

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +     Y  + D +  F++   + GD+++ 
Sbjct: 414 LGGDSCYFSSFDEIKNFVKEKCIHGDMLIT 443


>gi|288958921|ref|YP_003449262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azospirillum sp.
           B510]
 gi|288911229|dbj|BAI72718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azospirillum sp.
           B510]
          Length = 473

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
           R       I ITG+ GK+TT  ++   L++  +  A  G    ++G P+ L   P+   +
Sbjct: 105 RAERDCAFIGITGTNGKSTTTTLIGHILAAAGRKAAVGG----NLGTPV-LTFDPIGAGN 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L     LTH +   IAV+  I P HL+   G++   +AK  IF    +  
Sbjct: 160 ACVLEMSSYQL----ELTHSITFDIAVLLNITPDHLARHGGMDGYIAAKTLIFHRQTRPR 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIY 248
           T  +  DD     + A   A G + I+
Sbjct: 216 TAVIGVDDEHCRKIHAGLVAAGDQRIW 242


>gi|269127138|ref|YP_003300508.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
 gi|268312096|gb|ACY98470.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
          Length = 469

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  +A+TG+ GKTTT  ML   L +       +G    ++G P+  A +    D    EL
Sbjct: 113 APWLALTGTNGKTTTVRMLACILRAAGHRAPAVG----NVGTPIVEAALDPSCDVLAVEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLN 226
               L      +  + P    +  +AP HL     +E  A+ K +I+      GT+   N
Sbjct: 169 SSYQL----HWSSSLAPEAGAVLNVAPDHLDWHGSLEAYAADKGKIY----APGTVAVFN 220

Query: 227 YDDSFFELLKAKSH 240
            DD     L A + 
Sbjct: 221 ADDEISTRLAAGAE 234


>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
 gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 110/284 (38%), Gaps = 45/284 (15%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H LL  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLLSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +     LN DD   E     + A    T+ ++G    +D   R
Sbjct: 231 NREKYAILNSDDPVAEEYMRSTAA----TVVTYGIDVASDIMAR 270


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040773|gb|ACT57569.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 39/367 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158
           +A  +R + +I +++G+ GKTTT  ++   L   K     I G   N  G   T AR+  
Sbjct: 100 LAGLMRCRKSI-SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYG---TNARIGT 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             ++ + E   S    IR  + +V     V+T I P HL  +     I +A  +  + + 
Sbjct: 156 S-EWIVVEADESDGTFIRLPSDIV-----VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIP 209

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  D      L A+   +  + I ++G+   AD +    ++ S +S  +V +QG
Sbjct: 210 FYGFAVVCMDHPEVRSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQG 266

Query: 279 ---KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              K + V+       IG H   N   ++ +   L    +   K L+ F    G  +R+ 
Sbjct: 267 NVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASF---SGIKRRFT 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388
                    + D+ Y  +P  + + ++ + QI P    R+I  +        LS  F   
Sbjct: 324 LVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICP----RKIIAIHQPHRYSRLSTLFDQF 378

Query: 389 -----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441
                  D+  +  +Y+     + GF    L   +    H   +Y ++ D L   I +  
Sbjct: 379 SSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIA 438

Query: 442 VDGDVVV 448
             GD ++
Sbjct: 439 EPGDFII 445


>gi|148556850|ref|YP_001264432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
 gi|148502040|gb|ABQ70294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
          Length = 495

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ ITG+ GK+TT    T  ++ I +T         +IG+P+ L R P+    G++ L +
Sbjct: 152 VVGITGTNGKSTT----TALIAHILETAGVPTLMGGNIGLPI-LGRDPLPAG-GVYVLEL 205

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +I  +T  +   +AV+T I P HL  + G    A++K  +F    K  ++    D+
Sbjct: 206 SSY-QID-ITQSLDCDVAVLTNITPDHLDRYDGFAGYAASKLRLFTMQGKGISVIAGDDE 263

Query: 230 SFFELLKA 237
              E++ A
Sbjct: 264 PSVEIINA 271


>gi|221632098|ref|YP_002521319.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
 gi|221155634|gb|ACM04761.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
          Length = 462

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 152/391 (38%), Gaps = 56/391 (14%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           VA+  +  IP+     +LG L     AA  R+    IA+ G+ GK+TT  M+ +AL +  
Sbjct: 89  VAAFAAQRIPIVKRAALLGWL-----AASYRT----IAVAGTHGKSTTCGMIALALDAAG 139

Query: 135 KTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            T    IG+    +G   T AR+P         L +    E  +    + P IAV+  + 
Sbjct: 140 LTPGFAIGAEVRDLGG--TSARLPGG------NLFVVEADEYDYSFLFLEPDIAVVLNVD 191

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKTIYS 249
             H   F     +A A       L   GT  +  DD    +  + L+++ H      + +
Sbjct: 192 HDHPDLFPDRASVARAFRRFLARLRPVGTAVVWADDPVACAVADELQSRGH-----RVVT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG++  A +++       + S       G    +     G H   N    +  V  +   
Sbjct: 247 FGETAEAAYRVLPDGALRDPS-------GAIWPLALAVPGRHNRLNAAAAVAAVVQVGVP 299

Query: 310 VDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362
           +  A++AL  F+   G G+R+    +  G   ++D  Y  +P  + A I+   +      
Sbjct: 300 LVVAVRALEHFN---GVGRRFEEVGIVNGVRVILD--YAHHPREIAATIAAARERFPAAR 354

Query: 363 ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                 PH   R    L +      L Q+   DLA V  +Y      L+G    AL  A+
Sbjct: 355 LWAVFQPHTYSRTARFLTEFAHA--LEQA---DLAVVAEIYAAREQPLAGIDAAALASAI 409

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            R   +   + M      + +++  GDVV+V
Sbjct: 410 RRIPAIAVPDPMAAAET-VGAAMRAGDVVLV 439


>gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
 gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 31/188 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR + P   FFA KG  +   +F+ +AVQ G    V   D       + IP   V 
Sbjct: 38  LSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVQAGLSFYVAEKDY-----QVGIPAIIVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT---------KEMLTIALSSIKKTYA 138
           D+  A++ +A A     + K  ++A TG+ GKTT          +      LS++  T  
Sbjct: 91  DIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLD 150

Query: 139 CIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIAVI 189
               + +++  P  L L RM  +      + GM+HL  E+    +L +        + V 
Sbjct: 151 GKNFFKSNLTTPESLDLFRMMAEA----VDNGMTHLIMEVSSQAYLTKRVYGLIFDVGVF 206

Query: 190 TTIAPAHL 197
             I+P H+
Sbjct: 207 LNISPDHI 214


>gi|259501649|ref|ZP_05744551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|302191144|ref|ZP_07267398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           iners AB-1]
 gi|309803217|ref|ZP_07697314.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|312871630|ref|ZP_07731722.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
 gi|312873235|ref|ZP_07733291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|259166934|gb|EEW51429.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|308164725|gb|EFO66975.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|311091246|gb|EFQ49634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092855|gb|EFQ51207.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 25/263 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             N+D       EL   K+H +         +S  AD+ +       EQ ++E Q   + 
Sbjct: 227 IANFDQKNILEQELSLTKAHVVTFSE-----ESTQADYYI------GEQ-YLESQADHEI 274

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           M++    I G H  QN L+ + I  I+ A  +     LS F    G   R +  +     
Sbjct: 275 MKISDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMTYNNR 331

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
            + ++S + N  +   AI   SQ
Sbjct: 332 RIYNDSKSTNIEAASVAIPSFSQ 354


>gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|191167770|ref|ZP_03029577.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209917284|ref|YP_002291368.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SE11]
 gi|307311458|ref|ZP_07591100.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|309796081|ref|ZP_07690493.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|226706322|sp|B6HZ68|MURC_ECOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190902196|gb|EDV61938.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209910543|dbj|BAG75617.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE11]
 gi|306908437|gb|EFN38935.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|308120323|gb|EFO57585.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|315059314|gb|ADT73641.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli W]
 gi|320200390|gb|EFW74976.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EC4100B]
 gi|323181788|gb|EFZ67201.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1357]
 gi|323380128|gb|ADX52396.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli KO11]
 gi|324017748|gb|EGB86967.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 117-3]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G +++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFNEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 146 HIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG PL  A M   + DF + E+    L  I+      +P I+ I  I P HL      E
Sbjct: 142 NIGYPLIYAVMEAAEGDFIVAEISSFQLETIKEF----KPKISCIINITPDHLDRHKTFE 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                K  IFE   +     LNYDD     LK K+ 
Sbjct: 198 NYRDIKGRIFENQREDEYTVLNYDDPVTWSLKNKAK 233


>gi|325578820|ref|ZP_08148867.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159644|gb|EGC71776.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 157/396 (39%), Gaps = 71/396 (17%)

Query: 96  NKLAVAARLRSKATI------IAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----S 142
           N++ V  R +  A I      IA+ G+ GKTTT  M+++  +  K   T+   G      
Sbjct: 100 NRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG 159

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            N H+G    L     + D     L               +P ++V+T I P H+  + G
Sbjct: 160 KNAHLGASRYLIAEADESDASFLHL---------------QPMVSVVTNIEPDHMDTYEG 204

Query: 203 -IEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             E++ +   +    L   G   +  DD+   EL+         + + ++G S++AD+ +
Sbjct: 205 DFEKMKATYVKFLHNLPFYGLAVMCADDTVLMELVPQVG-----RQVLTYGFSEHADYHI 259

Query: 261 RKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             ++Q   Q  +  V   G+ + V+ +  G H A N    L +        +  ++AL+ 
Sbjct: 260 EDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKEEGIGNEAILEALAD 319

Query: 320 FHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISP 365
           F   +G G+R+          G   L+D+ Y  +P  +   I    +            P
Sbjct: 320 F---QGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQP 375

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-- 423
           H   R   +  D  ++  LSQ   +D   +L +Y      + G    A   AL RSI   
Sbjct: 376 HRYSRTRDLFDDFVQV--LSQ---VDALIMLDVYAAGETPIVG----ADSKALCRSIRNL 426

Query: 424 -----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                +  S+T + L   +   + DGD+++ + + S
Sbjct: 427 GKVDPILVSDT-EQLGDVLDQIIQDGDLILAQGAGS 461


>gi|146310298|ref|YP_001175372.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           sp. 638]
 gi|145317174|gb|ABP59321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter sp.
           638]
          Length = 438

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A +IAITGS GK+T    +T  +  + K          +IG+P   A M +D D  ++
Sbjct: 103 AQAPVIAITGSNGKST----VTTLVGEMAKAAGINVGVGGNIGLP---ALMLLDQDRELY 155

Query: 166 ELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            L +S    E     H V    A I  +   H+  +  G+++  +AK  ++E  +     
Sbjct: 156 VLELSSFQLETTSSLHAV---AATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPVRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R++ AL     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLALEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVL 360
             I++S   N  S +AA++ L
Sbjct: 314 RWINDSKATNVGSTEAALNGL 334


>gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 454

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 159/408 (38%), Gaps = 55/408 (13%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           H V K   +   N + V     L IPV    ++L  L       RLR   T IA+ G+ G
Sbjct: 66  HVVVKSTAVPETNPE-VQEARRLGIPVIPRAEMLAEL------MRLR---TGIAVAGTHG 115

Query: 119 KTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           KTTT  +L  I  ++       IG   N  G    L         G + +  +   +  F
Sbjct: 116 KTTTTSLLAEIFTAAGLDPTVIIGGRLNSWGANAYLGE-------GEYLIAEADESDGSF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  ++ P I ++T +   HL  +   + I  A  E    +   G   +  DD   E +  
Sbjct: 169 L--VLAPIITIVTNVDADHLDFYPDQQAIDRAFTEFMNKVPFYGVNVVCGDDPGVERILP 226

Query: 238 KSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQN 295
                GI + I ++G       +  +   C E+   ++ +  +   +VV +  G H   N
Sbjct: 227 -----GIRRRIMTYGLRPGNRIR-GEITSCQERCIFKLYVDEEYWADVVLNKPGRHNVLN 280

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  +G+        +  ++ L  F    G G+R+     +G   ++D+ Y  +PA + A
Sbjct: 281 SMAAIGVALEAGLPKEAILQGLERFG---GVGRRFEIKGEKGGILVVDD-YGHHPAEIGA 336

Query: 356 AIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNIS 402
            ++          ++    PH   R  A+ GD C++         D+A+VL    +Y  S
Sbjct: 337 TLATAKDCYPERRLVVAFQPHRFTRTKALFGDFCKV--------FDVADVLLLTEIYAAS 388

Query: 403 HVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + G   L+L   + +   + V +    + +   +   L  GDV++
Sbjct: 389 EAPIPGVSGLSLAQGIRQVGKVDVSFFPNFEEMEAALPGLLRPGDVLL 436


>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W F++L+ +             +  + +DSR++     F AIKG   DG  +I HA++ G
Sbjct: 23  WVFNELISSAL----------VITALQLDSRNVTVGNLFIAIKGHKTDGRLYIKHAIKNG 72

Query: 65  AGLVVVNT---------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATII 111
           A  V++ +         ++V ++ S  +P+     +  A++  ++A R          +I
Sbjct: 73  AVAVLLESTNNDNFLAQNIVNNVSS-CVPIINFYKLNQAVS--SIAGRFYGHPSRNLNLI 129

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +TG+ GKTT   +L   +  + +  A +G+
Sbjct: 130 GVTGTNGKTTISHLLANWVELLGEKSAVMGT 160


>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
 gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 16/203 (7%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L  I++     RP  A++  I P HL+    +E   +AK  IFE    T 
Sbjct: 159 FLVAELSSYQLETIKYF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD 214

Query: 222 TIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            + LN DD     +  ++ SH L I    +    +N  +        ++    +  +  +
Sbjct: 215 YLVLNIDDPVVADMEHRSSSHILKISQKKAV---ENGAYYADGQCYIAKDGVAKFVIGNE 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +    H  G H  +N+L  + +   L   V+T  + +S FH  E R +R +      F+
Sbjct: 272 DI----HIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTIDGITFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
              ++S   N  S+  A+    Q
Sbjct: 328 ---NDSKATNVDSVVKALESFDQ 347


>gi|220912340|ref|YP_002487649.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859218|gb|ACL39560.1| UDP-N-acetylmuramate/alanine ligase [Arthrobacter chlorophenolicus
           A6]
          Length = 464

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 109 TIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           T++ I G+ GK+TT  M+T+ L  + +  ++A IG+    +GV             GIF 
Sbjct: 119 TVVTIAGTHGKSTTTSMVTVLLQGAGLDPSFA-IGANVPSLGVNAAHGTS------GIF- 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  +   +  FL +  RP IAV+T +   HL ++   E +  +       L   G +   
Sbjct: 171 VAEADESDGSFLNY--RPQIAVVTNVEADHLDHYGTAEAVYESFDRFAALLPADGLLVAC 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            DD     L  ++   G   +  +G + +AD  L
Sbjct: 229 ADDPGARALAERTRNAGTTRVLLYGTAGDADLTL 262


>gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
 gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
          Length = 519

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 40/240 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           D+RS+A  +AFFA      D   FI  A+++GA  V+V  +     + +   L++P    
Sbjct: 34  DTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAAVLVQPEGFGGAIDASTMLAVP---- 89

Query: 89  DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                ALN+LA  +A+      +     + +TG+ GKT+  + ++ AL+++    A IG+
Sbjct: 90  -----ALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 143 YNNHIGVPLTLARMPVDV-DFGIFELGMSHL--GEIRFLTHLVRPH-------------I 186
                G+P  L        D    +  ++ L     + +   V  H             I
Sbjct: 145 LGT--GLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGI 244
           AV T +   HL      E   +AKA +F   E    + +N DD+    L A  + HA  I
Sbjct: 203 AVFTNLTQDHLDYHHTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTRGHARTI 261


>gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 490

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 150/365 (41%), Gaps = 32/365 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GIS  +  +   + F   KG  +D H+ I   ++KGA  V V  +   +  + SI VF
Sbjct: 25  ISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIEKGA--VAVVVEREVNFDAPSILVF 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT---KEMLT------IALSSIKKTY 137
                   L  L      +   T      +   TTT     MLT       AL+++ K  
Sbjct: 83  DSRYFEAKLASLFFEDPWKDTLTFGITGTNGKTTTTLMIYHMLTSMGVKGSALTTVLKN- 141

Query: 138 ACIG-SYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVITT 191
             +G +Y   I  P     L+ M  + D G   F L +S    ++     VR  + + T 
Sbjct: 142 -VLGKTYYEDITTPDAITVLSAMKENKDGGGRFFALEVSSHALVQKRVEGVRFDVGIFTN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I+  HL      E    AK  +F+ L+  G   LN  +S  + L  +   +      +FG
Sbjct: 201 ISRDHLDFHGTFENYLKAKLHLFDLLKDDGFAVLN--ESLSDALHRRVRKV------TFG 252

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            S+NA+++L   +   E +   ++     ++V    IG   A N    +  +  L  D  
Sbjct: 253 TSRNANYRLGNIEVSWEGTSFVLETPDGFLKVFTRAIGDFNAYNAAAAIAALHQLGFDPK 312

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              ++L  F   EGR +  + A   GF  ++D  +  +P +++  +  + +IS   +GR 
Sbjct: 313 ELAESLESFTGVEGRFEVVKAAKKSGFNVIVD--FAHSPDALEKLLKNVRKIS---KGRV 367

Query: 372 IAVLG 376
           I V G
Sbjct: 368 IVVFG 372


>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii L2-6]
          Length = 492

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 157/400 (39%), Gaps = 58/400 (14%)

Query: 10  LLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L Q ++G S  +V       +  I  DSR  AP   F  I G   D HD+    V  G  
Sbjct: 3   LEQLLEGVSYTLVQGSLELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVADGVT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTT 121
            +VV  D+  S    ++P   V  V  +   LA+ +         + T+I +TG+ GKTT
Sbjct: 63  ALVVQHDIDLS----TVPGAAVLKVESSRYALALMSGNLFGNPSRRMTMIGVTGTKGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGS-----YNNHIGVPLTLAR-----------MPVDVDFGIF 165
           T  M+   L +  +    IG+       +H     T              +    D  + 
Sbjct: 119 TTHMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREFLDAGCDTALM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTI 223
           E+    L   R     +   I V T ++P H+        EE  S K ++F   ++  T 
Sbjct: 179 EVSSQGLMMDRVAG--IHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF---KRCTTG 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGK-S 280
            +N DD   E L  + H   + T   +G S+ AD++   ++      ++ V+  + GK  
Sbjct: 234 VVNIDDENTEAL-LEGHTCKLVT---YGCSEKADYRAGTYQLLRTHDFLGVRFHVSGKDD 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQ 336
           M+V  +  G     N L  L +  +L    D AI      H   GR    G+     +++
Sbjct: 290 MDVKVNMPGEFSVYNALAALTVGKVLGLP-DEAI------HEGLGRCVVKGRVELVPISR 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            F  L+D  Y  N  S ++ ++ L    PH   R + V G
Sbjct: 343 KFTILLD--YAHNEVSTESLLTTLRAYEPH---RLVVVFG 377


>gi|291544049|emb|CBL17158.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. 18P13]
          Length = 471

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 122/321 (38%), Gaps = 48/321 (14%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G D I+H     A ++  N +++A+  S  +PV    ++LG +      A        I 
Sbjct: 68  GADLIVHT----AAIMADNPELIAAKAS-GVPVLERSELLGIVTSKYDNA--------IC 114

Query: 113 ITGSVGKTTTKEMLT-------IALSS-IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           I G+ GKTTT  M         + LS+ I     CIG         + +      VD   
Sbjct: 115 ICGTHGKTTTTSMAAQILFTAGVDLSAFIGGKLPCIGGSGRAGKSDIMVCESCEFVD--- 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       FL   + P +AVI  +   HL  F  +E +  +  +  E   +  T+ 
Sbjct: 172 -----------TFLK--LYPDVAVILNVDADHLDYFGTLENVIKSFHKFAEKASR--TVI 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSME 282
            N +DS     +     +  K + +FG + + D+   + +  S  E  ++ +       E
Sbjct: 217 YNGNDSN---TRKAVEGISGKEMITFGNTPDCDYYAAQVQHVSGMETHFIAMHHDKPMGE 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +V H  G H   N +  +          D   K L  F    G G+R+      G  T++
Sbjct: 274 IVLHVAGIHNVLNAMAAIAAADHAGVPFDAIQKGLCEF---RGAGRRFEKVAQVGGITVV 330

Query: 343 DESYNANPASMKAAISVLSQI 363
           D+ Y  +PA +   ++   ++
Sbjct: 331 DD-YAHHPAELTVTLNAAKEM 350


>gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae
           ATCC 23330]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 23/156 (14%)

Query: 110 IIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFGI 164
           IIAITGS GKTTT  ++      S +    A       +IG P+    L R     D  +
Sbjct: 110 IIAITGSNGKTTTTSLVGHLCQQSGLDTVIA------GNIGTPVLEAWLERRGKPADVWV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +    A    I+  HL  +  + + A AK  IF G        
Sbjct: 164 LELSSFQLET----TDCLNATAATCLNISEDHLDRYDDLLDYAHAKDRIFHG---DTVQV 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           LN DD F   +K + H    +T++ F  +++ D+ L
Sbjct: 217 LNADDVFCRAMK-RDH----RTVHYFSLTQSQDYHL 247


>gi|66047328|ref|YP_237169.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500775|sp|Q4ZNZ1|MURC_PSEU2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|63258035|gb|AAY39131.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 486

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 152/366 (41%), Gaps = 43/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGHVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395

Query: 402 ---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVK 450
                V+ +G   +   D+      +  S  +D +++         ++  L  GD+++ +
Sbjct: 396 LLLMEVYPAGEEPIPGADSRNLCHSIRQSGQLDPIYIERGVELAPLVKPLLRAGDILLCQ 455

Query: 451 SSNSCG 456
            +   G
Sbjct: 456 GAGDIG 461


>gi|260063714|ref|YP_003196794.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783159|gb|EAR14332.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 464

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 31/135 (22%)

Query: 107 KATIIAITGSVGKTTTKEMLTIAL-----------SSIKKTYACIGSYNNHIGVPLTLAR 155
           +AT++AITGS GKTTT  MLT  L            +I  ++A + +  +H    L ++ 
Sbjct: 119 QATLVAITGSNGKTTTA-MLTHHLLRQGGMDAALAGNIGDSFAAMVARESHPCYVLEVSS 177

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
             +D   G                   RPHIAVIT I P HL  +   ++   ++K  I 
Sbjct: 178 FQLDGILGF------------------RPHIAVITNITPDHLDRYEYRMDRYIASKKRIA 219

Query: 215 EGLEKTGTIFLNYDD 229
           E    +  +  + DD
Sbjct: 220 ENQGPSDFLVFDRDD 234


>gi|319776620|ref|YP_004139108.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
 gi|317451211|emb|CBY87444.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 458

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 20/200 (10%)

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVIT 190
           +KK Y  +    N IG+P  +  +    +  IF L +S   L  I++     +P +  I 
Sbjct: 132 LKKQYEDVVVCGN-IGLPF-IDTVETSSENTIFVLEISSFQLETIKYF----KPKVGCIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL+    +E    AK  IFE +++ G   LNYD++    L      L    +  F
Sbjct: 186 NITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNVTRDL----IGLAKGNVIVF 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306
            K+K   F+   +    E   +    +GK+ EV+        G H  +N L  +      
Sbjct: 242 SKTK-TQFENVVF---VENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPF 297

Query: 307 TADVDTAIKALSVFHPKEGR 326
             + DT  + L  F   E R
Sbjct: 298 GIEKDTIEQVLKTFRGVEHR 317


>gi|126651320|ref|ZP_01723527.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. B14905]
 gi|126591849|gb|EAZ85932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. B14905]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 34/296 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GKT+T  ++   +   K T   IG      G     A    + DF + E    
Sbjct: 104 IAITGAHGKTSTTGLMAHVVGGYKPTSYLIGD-----GTGAGHA----NADFFVME---- 150

Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E R  FL +   P  AV+T I   H   F+ I+++ SA   +   L+    I    D
Sbjct: 151 -ACEYRRHFLAY--NPDYAVMTNIDFDHPDYFANIDDVYSAFQSL--ALQVKKAIIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + ++AK     +  +Y +G     DF+ R  ++ +E +  +V ++ +        I
Sbjct: 206 DEQLQRIQAK-----VPVVY-YGFGSENDFEARNVEKTTEGTKFDVFVRNEFYSTFF--I 257

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  +L TL ++++   +  +        H  +G  +R+    + G   LID+ Y  
Sbjct: 258 PLFGDHAILNTLAVITLCEYEGISPDIIQDRLHTYKGVKRRF-TETDIGDNVLIDD-YAH 315

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +P  ++A I    Q  P  E   +A+          +Q+F  D A+ LSL + +++
Sbjct: 316 HPTEIRATIQSARQKFPDRE--LVAIF--QPHTFTRTQAFLQDFADSLSLADTAYL 367


>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
 gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
          Length = 508

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 152/384 (39%), Gaps = 53/384 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ +S +    + F  + G   DG DF   A+  GA   +V+          S    
Sbjct: 26  VKGLATNSHACQTGDLFIGMPGTRVDGGDFWPSAIANGAVAALVSQQAAEKTPQTSTESP 85

Query: 87  GVDDVLGALNKLAVAARLRS--------KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  V+ ++N     A++ +        +  ++ +TG+ GKTTT  ++   L    K   
Sbjct: 86  ELPCVIPSVNMTTACAQVAAAFYGYPAQQLKLVGVTGTNGKTTTTHLIEYLLECSDKPTV 145

Query: 139 CIGS-YNNHIGVPLTLA-RMPVDVD--------------FGIFELGMSHLGEIRFLTHLV 182
             G+ Y   +G  +T A   P  V+              +G+ E+    L + R L    
Sbjct: 146 LFGTLYTRWLGSQITAAYTTPFAVELQQKLAEAVKAGCQYGVMEVSSHALHQGRVLECPF 205

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +AV T +   HL     +E+   AKA +F      G   +N DDS+ + L  +  A 
Sbjct: 206 --DVAVFTNLTQDHLDYHQTMEDYFEAKALLFSPQYLQGRAIINADDSYGKRLIERLEAD 263

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHM 292
            + + YS   S  AD     W   ++ S+    ++G    V+H            +G + 
Sbjct: 264 RVWS-YSINDS-TADL----W--AAQLSYEPNGVKG----VLHTPQGEAAFELPLVGQYN 311

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  +G    L  D+ T +  L  F    GR +R + +  Q    ++D  Y   P S
Sbjct: 312 LSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQDVSVIVD--YAHTPDS 369

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           ++   ++L    P   GR I V G
Sbjct: 370 LE---NLLKASRPFIPGRMICVFG 390


>gi|329769529|ref|ZP_08260939.1| UDP-N-acetylmuramate-alanine ligase [Gemella sanguinis M325]
 gi|328838744|gb|EGF88342.1| UDP-N-acetylmuramate-alanine ligase [Gemella sanguinis M325]
          Length = 435

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 109/292 (37%), Gaps = 41/292 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            +L  +   IA+TG+ GKTTT  M++        T   IG    H            + D
Sbjct: 95  GKLLDEIPSIAVTGAHGKTTTSTMVSNIFKHNFVTSFLIGDGTGH---------GEKNSD 145

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           + + E          +  H +   P+ A++T I   H   F+   ++  A       ++ 
Sbjct: 146 YIVAEA-------CEYYRHFLAYHPNYAIVTNIDFDHPDYFNDEHDMFDAFQSFVNQVKD 198

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             T+ +  DD     LK  +       + ++G ++  D+Q++  K  SE S  +V    +
Sbjct: 199 --TVVICGDDRLASQLKPST-----AKVVTYGFNEGNDYQIKNVKTTSENSKFDVYKNSE 251

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +      + G H   N    + +  I     D   ++L  +H  E R   ++   N   
Sbjct: 252 LLGTFTMAVFGLHDISNATSAIALADICGLSTDEIQQSLGSYHHAERRFTEHKVGTN--- 308

Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCE 380
             ++ + Y  +P+ +KA I           +++   PH   R    L +  E
Sbjct: 309 --IVVDDYAHHPSEIKATIDSARRKYSDKQIIAIFQPHTYTRTAKFLNEFAE 358


>gi|206900214|ref|YP_002250973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
 gi|206739317|gb|ACI18375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IG+P       +   + + E+    L +I       RP I++   I P HL  +S ++E
Sbjct: 144 NIGLPFVSVVKNLKEGYFVLEISSFQLEDIEEF----RPFISLFINIYPDHLDRYSNMDE 199

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              AKA IF   +K     LN+D    E++K   H    K  + F K
Sbjct: 200 YILAKARIFMNQKKEDYAILNHDQE--EIVKLAKHYEVRKLFFGFNK 244


>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
 gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVI  I P H+     +E   +AKA IFE + K   + LN +D +  +L  K+    
Sbjct: 181 PKAAVILNITPDHIERHHTMERYVAAKARIFENMGKDNCLLLNAEDEYTPILMKKAKN-- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             T+  F  S++ +        C   + + ++ +GK ++V
Sbjct: 239 -TTVCLFSISRDVE-----EGACLNGADLVIKRRGKVLKV 272


>gi|188584697|ref|YP_001916242.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349384|gb|ACB83654.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 894

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 43/327 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------ 151
           L+++A +I++TG+ GKTTT   +   L S  K      S    I   L            
Sbjct: 480 LQARAPVISVTGTNGKTTTVRAIDHILRSNGKDVGMTSSDGTFIKGELIDSGDNTGPNSA 539

Query: 152 -TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS-- 208
             L + P  +D  +FE     L  ++         +AV+T IA  HL    GIE I    
Sbjct: 540 KALLKDPT-IDSFVFETARGGL--VKNGLGYSNAKVAVVTNIANDHLGQ-DGIESIDDLI 595

Query: 209 -AKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHAL--GIKTIYSFGKSKNADFQLRKW 263
             K+ + E +EK G + LN  D +    + KAK   +   +++   + KS  A      +
Sbjct: 596 FVKSLVVEAVEKQGVVVLNASDHYVSDFIRKAKGRIIFYAMESDNHYVKSHLAAGGSALY 655

Query: 264 KQCSEQSWMEVQLQGKSMEVVH-----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  +   +   K  E+        G+  H  +N +  +            A + L 
Sbjct: 656 LDQDNIVYATGKFHRKLGEITQLPLTMAGMARHNIENCMAGIAAAIGFGIAPSKAFEVLK 715

Query: 319 VFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            F P      GR   +RC   QG   L+D  Y  NP  M   ++++ ++        I V
Sbjct: 716 QFAPSYQDTPGRCNLFRC---QGKTVLLD--YGHNPEGMNRVLAMVEKMPVEKVISVIGV 770

Query: 375 LGD-----MCEMGELSQSFHIDLAEVL 396
            GD     + E G++   +H  + +VL
Sbjct: 771 PGDRNDKLIKETGKVVGKYHELIEKVL 797


>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
 gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 489

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 142/360 (39%), Gaps = 41/360 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR + P   FF +KG   DGHDF   AV++GA  +V    +     S+++PV  V 
Sbjct: 26  LEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERGAVAIVAERPL-----SVNVPVVVVP 80

Query: 90  DVLGALNKLAVA------ARLR--------SKATIIAITGSVGKTTTKEMLTIALSSIK- 134
           D   A+  LA A       RL          K T   I   V +   K++  I     K 
Sbjct: 81  DSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQVARKAGKKIGLIGTVGTKI 140

Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             ++Y  + +    + +  T  +M VD  V+F   E+    L + R   H     +AV T
Sbjct: 141 GDRSYPAVNTTPESLVLQRTFKQM-VDEGVEFVTMEVSSHALHQGR--VHGCDYDVAVFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   HL     +EE  +AK  +F  L       +     LN+DD   +  K  + A   
Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I ++G  + +D    + +        ++     +M +    +G     N+L       
Sbjct: 255 -PIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNVYNLLAATAACL 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                + T  +AL+   P  GR +       Q F  ++D  Y   P S++ A+  + Q +
Sbjct: 314 ASGFSLATIAEALANVSPVPGRFE--TVDEGQNFTVIVD--YAHTPDSVENALKTVRQFA 369


>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226722951|sp|B0K8K5|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 454

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 146 HIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG PL  A M   + DF + E+    L  I+      +P I+ I  I P HL      E
Sbjct: 142 NIGYPLIYAVMEAAEGDFIVAEISSFQLETIKEF----KPKISCIINITPDHLDRHKTFE 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                K  IFE   +     LNYDD     LK K+ 
Sbjct: 198 NYRDIKGRIFENQREDEYTVLNYDDPVTWSLKNKAK 233


>gi|332768881|gb|EGJ99060.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2930-71]
          Length = 476

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 107 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 160

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 161 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 219 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMCVTLNAP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 275 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 313


>gi|291279000|ref|YP_003495835.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
 gi|290753702|dbj|BAI80079.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 144/368 (39%), Gaps = 49/368 (13%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141
           IPV    ++L  L +L      RS    I ++GS GKTTT  M+  I + +       IG
Sbjct: 89  IPVIKRGEMLAELTRLK-----RS----ITVSGSHGKTTTTSMIAHIFIEAKLDPTIVIG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              N  G    L +       G + +  S   +  FL  L+ P I V+T I   HL  + 
Sbjct: 140 GRLNSSGQNAVLGK-------GDYFICESDESDRSFL--LLYPTINVVTNIDLEHLDVYQ 190

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            +E+I SA  E    +   G   L  ++ +  +++ +       K   ++G  K+AD + 
Sbjct: 191 DLEDIKSAFIEYCNKIPFYGLNLLCIENQNVTDIIPSIE-----KRFQTYGFKKSADIRA 245

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
               Q    S  +V    + +  +H +  G H   N L  +G+        D   +AL  
Sbjct: 246 DNIIQDGYISTFDVYYFSEKLGRIHLNTPGIHNVLNSLGAIGVAIECGITFDVIKEALKN 305

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI----------SVLSQISPHGEG 369
           F   +G  +R           +ID+ Y  +P  +KA +           +++   PH   
Sbjct: 306 F---QGVERRLSIRYKDERRVVIDD-YGHHPTEIKATLQSVRSLYPDYKIVTIFQPHRYT 361

Query: 370 RRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHY 426
           R  A+L       E + SF+  D+  V  +Y  S   + G    +L  K  +     V+Y
Sbjct: 362 RTKALL------NEFASSFYDTDILIVTDIYAASEAPIEGVSSDILVEKIKMQGLKDVYY 415

Query: 427 SETMDGLF 434
               D +F
Sbjct: 416 IADFDKIF 423


>gi|294783651|ref|ZP_06748975.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480529|gb|EFG28306.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 463

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 137/331 (41%), Gaps = 46/331 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KGA  V+ +T +  +    +   +  ++ +  L +  + A+L ++ T 
Sbjct: 50  YNEHD---EENVKGADYVIASTAIKETNPEYA---YAKENGIKILKRGELLAKLLNRETG 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  +     T    G     I   +     P   ++ I E   S
Sbjct: 104 IAIAGTHGKTTTSSMLSAVMLKKDPTIVVGG-----ILPEIKSNARPGKSEYFIAEADES 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              +  FL   + P  +VIT I   HL     ++ I  +  E     +K   I +   N 
Sbjct: 159 ---DNSFL--FMNPEYSVITNIDADHLDVHGNLDNIKKSFIEFILHTQKESIICMDSKNL 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGK-SME 282
            D+  +L + KS      T YS  K +NAD   +  +    ++  EV    +L+G+ S+ 
Sbjct: 214 MDAISKLPEGKS-----VTTYSI-KDENADIYAKNIRIVDRKTIFEVYVNKELKGEFSLN 267

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----GF 338
           +     G H  QN L  + +      + D   +AL+ F   +G  +RY    +Q    G+
Sbjct: 268 IP----GEHNIQNSLPVIYLALKFGLNKDEIQEALNQF---KGSKRRYDVLYDQELENGY 320

Query: 339 FT-----LIDESYNANPASMKAAISVLSQIS 364
            +      I + Y  +P  +KA +  +  + 
Sbjct: 321 GSKTKRVRIVDDYAHHPTEIKATLKAIKSVD 351


>gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS315]
 gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes SSI-1]
 gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptococcus pyogenes
           MGAS315]
 gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,
           6-diaminopimelate ligase [Streptococcus pyogenes SSI-1]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 24  QGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           QGF    +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L 
Sbjct: 31  QGFSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELG 83

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           IPV  V D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 84  IPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 498

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 153/384 (39%), Gaps = 60/384 (15%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKG---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           QGFV    +DSR +   + F A+     P      F   A+ KGA L VV+   +A   S
Sbjct: 23  QGFV----LDSRKVQAGQIFIALTSLSQPE-KTEQFAQIALDKGA-LAVVSETELALANS 76

Query: 81  LSIPVFGVDDVLGALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           + +P   V  ++G   K   +A      A I+A+TG+ GKTT   ++   L    K+ A 
Sbjct: 77  IVVP--NVRHLMGGWQKQFLLATSQVQPARILAVTGTNGKTTISRLVAELLMLQGKSCAV 134

Query: 140 IGSYNNHIGVPLTLARMPVDVD-----------------FGIFELGMSHLGEIRFLTHLV 182
           +G+  N I +P   A     +D                 F   E     L + R     +
Sbjct: 135 MGTTGNGI-LPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEASSHGLEQGRLAGSEI 193

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHA 241
              IA  + ++  HL     +E  A AK+ +F+         +N DD     +++A  + 
Sbjct: 194 E--IAAYSNLSRDHLDYHGTLEVYAEAKSRLFQ-FPSLKVAVINLDDEHAGVMIQAAQNN 250

Query: 242 LGIKTIYSFGKSKNADFQLR---------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                I ++  ++ AD+ ++          +  C+ Q+  +VQ         +  +G+  
Sbjct: 251 PAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQAEYQVQ---------NPLLGHFN 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N++ +L +V     D+   +   +      GR +  R   +     ++D ++  +   
Sbjct: 302 IENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIR---DDARLFVVDYAHTPD--- 355

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
             A + VLS +  H E +  AV G
Sbjct: 356 --ALVQVLSTLKRHVEQQLWAVFG 377


>gi|319786253|ref|YP_004145728.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464765|gb|ADV26497.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 479

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 18/185 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLTAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AVIT I   HL N+ G    + SA AE+ + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGGDFARLRSAFAELLQRLPFYGLAVLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L A++     + + ++G ++NAD +     Q   +    ++L +G S+ V   
Sbjct: 228 DDPEVASLAAETP----RHVMTYGTAENADVRAEDIVQEGPRMRFTLRLPEGASVPVTLA 283

Query: 287 GIGYH 291
             G H
Sbjct: 284 LPGRH 288


>gi|258649001|ref|ZP_05736470.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850618|gb|EEX70487.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
          Length = 446

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 21/151 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV ++    IPV         ++++  A R  ++A  I ITGS GKTTT  ++   L   
Sbjct: 77  MVRALREKGIPV---------ISEIEFAGRY-TQARTICITGSNGKTTTTSLIYHILQKA 126

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTI 192
                  G    +IG    L     DVD+ + EL    L ++ RF     R  IAV+  I
Sbjct: 127 GYNVGLAG----NIGRSFALQVAEGDVDWYVIELSSFQLDDMFRF-----RADIAVLLNI 177

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
            P HL  +   +E   ++K  I +      T
Sbjct: 178 TPDHLDRYDFKMENYVASKMRILQNQRPQDT 208


>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2866]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 137/356 (38%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++     +  +   H+  +  +E+   AK  I+    K G   LN +D
Sbjct: 162 FQLET----TYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                              +FG+++N       + + S   W++ +  GK   +V     
Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D+   AL  F   +G   R++        
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +      L+ F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGAQLAKF-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|328957125|ref|YP_004374511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
 gi|328673449|gb|AEB29495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
          Length = 470

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 146 HIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P +L A+     D  I EL    L  I  L    RPHIAVIT I  AHL      E
Sbjct: 157 NIGTPASLVAQKATSDDEIIMELSSFQLMGITEL----RPHIAVITNIYSAHLDYHGTRE 212

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           E  +AK  I +   +   + +N+D      L  +S A    TI  F + +
Sbjct: 213 EYVAAKMSITKNQTEEDYLIVNWDQPELRELSQQSKA----TIVPFSRKE 258


>gi|163841228|ref|YP_001625633.1| UDP-N-acetylmuramate--L-alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
 gi|189029025|sp|A9WRD7|MURC_RENSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|162954704|gb|ABY24219.1| UDP-N-acetylmuramate--alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 18/206 (8%)

Query: 59  HAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           HA Q   GA  VV++T + A+   L    F     L  L++    A   ++ T++A+ G+
Sbjct: 60  HAAQNVAGADTVVISTAIRANNPELE---FARTQGLRVLHRSEALAAAMAQDTVVAVAGT 116

Query: 117 VGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  M+ + L  + +  ++A  G+      VP  L         GIF +  +   +
Sbjct: 117 HGKTTTTAMIAVLLREAGLDPSFAVGGT------VP-ALGVNAAHGAGGIF-VAEADESD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             FL +  RP IAV+T   P HL ++   E +  A       +   G +    DD     
Sbjct: 169 GSFLNY--RPQIAVVTNAEPDHLDHYGTAEAVMEAFQSFIGLIPADGLLVACTDDDGALA 226

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQL 260
           L  ++ A G + + ++G+S  A+  L
Sbjct: 227 LAKQAAARGTRVV-TYGRSAAAEVWL 251


>gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
 gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 16/203 (7%)

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           ++    +R  I  IT I   HL      E    AK  I   L+  G   +N+     EL+
Sbjct: 184 QYRVESIRYDIVGITNITRDHLDFHQTFENYKRAKLHILNLLKPNGIAIVNH-----ELI 238

Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               H +  K I   +FG   N+D+ + +        + +++      +VV   +G   A
Sbjct: 239 ----HDIPKKNIRVVTFGTDNNSDYVIHEIISNWSGIFFKLKTPFGEKKVVSQLLGDFNA 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+ + +  +  +  D+D  I A+S F   +GR +    A   G   +ID  +   P ++
Sbjct: 295 FNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGIEIVID--FAHTPDAL 352

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           + AI  + +++   +GR I V G
Sbjct: 353 EKAILSIRKLT---KGRIITVFG 372


>gi|301155887|emb|CBW15356.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus parainfluenzae
           T3T1]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 35/189 (18%)

Query: 96  NKLAVAARLRSKATI------IAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----S 142
           N++ V  R +  A I      IA+ G+ GKTTT  M+++  +  K   T+   G      
Sbjct: 100 NRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG 159

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            N H+G    L     + D     L               +P ++V+T I P H+  + G
Sbjct: 160 KNAHLGASRYLIAEADESDASFLHL---------------QPMVSVVTNIEPDHMDTYEG 204

Query: 203 -IEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             E++ +   +    L   G   +  DD+   EL+         + + ++G S++AD+++
Sbjct: 205 DFEKMKATYVKFLHNLPFYGLAVMCADDAVLMELVPQVG-----RQVLTYGFSEHADYRI 259

Query: 261 RKWKQCSEQ 269
             ++Q   Q
Sbjct: 260 EDYEQTGFQ 268


>gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
 gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 47/332 (14%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           H +G D I+++      +   N +++A   +L IPV         +++  + AR+ ++ T
Sbjct: 60  HVEGADSIVYSTS----ISKDNPEVIAG-QALGIPV---------MHRSQMLARILNERT 105

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            +A+ G+ GKTTT  M++  L         I      IG  L  A          + +  
Sbjct: 106 GVAVAGAHGKTTTTSMISHVLEECGVDPTFI------IGGELMSAGTNAKAGTSDYVIAE 159

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL +  RP   ++T+I P HL +F G    +  A  +    L+  G   L  D
Sbjct: 160 ADESDGSFLEY--RPMYEIVTSIEPDHLEHFDGDFNNLKQAYVQFLSHLKPDGKAILCID 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKN----ADF---QLRKWKQCSE-QSWMEVQLQGKS 280
           DS    +         KT+ ++    N    A F    +    +CS  Q + + +  G+ 
Sbjct: 218 DSHVREVMPSVE----KTVVTYAVDPNFVAQAQFSATSIECGDRCSTCQVYHKDERLGEL 273

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             VV    G H   N L  + +   +    D   +ALS F    G  +R++  +      
Sbjct: 274 CLVVP---GKHNIANALAAIVVCLDIGLSFDKIAQALSTF---SGAKRRFQI-IGDARGV 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           L+ + Y  +P  + A +S          GRR+
Sbjct: 327 LVVDDYAHHPTEIIATLS-----GARASGRRV 353


>gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3
           str. Alaska E43]
 gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 108/274 (39%), Gaps = 48/274 (17%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AI+G+ GKTT   ML+ I L +                 P  L    +D+  G F +G 
Sbjct: 114 VAISGAHGKTTCTSMLSNITLKANLD--------------PTILVGGELDIIGGNFRIGS 159

Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           S      F+T             P++ VI  I   HL  +  I+EI     +  + +   
Sbjct: 160 SDY----FITEACEYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPND 215

Query: 221 GTIFLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEV 274
           G +     DS  +  L KAK + L     Y F   +NAD   R      K C+  S+   
Sbjct: 216 GYLIGYIGDSRVKEILSKAKCNTLS----YGF---ENADVTARNITFNEKGCA--SFDVY 266

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +   K  ++     G H   N L ++ +  I   + D  I  LS     +G  KR+    
Sbjct: 267 KHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLS---ECKGAHKRFEYKG 323

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                T+ID+ Y  +P  +KA ++   +I PH +
Sbjct: 324 EVNGVTVIDD-YAHHPVEIKATLNTSKKI-PHNK 355


>gi|330828043|ref|YP_004390995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
 gi|328803179|gb|AEB48378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++  +IAITGS GK+T     T+    I +    +G   N IG P L L + P  +D  +
Sbjct: 95  TQTPVIAITGSNGKSTVT---TLVGEMIAEAGLNVGVGGN-IGTPALELLKQP--MDLCV 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI    + +  I 
Sbjct: 149 LELSSFQLET----THSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIH---QHSKHIL 201

Query: 225 LNYDDS 230
           +N DD+
Sbjct: 202 VNRDDA 207


>gi|312874653|ref|ZP_07734677.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325912989|ref|ZP_08175362.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
 gi|311089883|gb|EFQ48303.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325477669|gb|EGC80808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 33/267 (12%)

Query: 106 SKATIIAITGSVGKTT----TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           S A  + +TGS GKTT    T+ ++   L  +      +G    +IGVP++   +  +  
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKLGGHAYAVG----NIGVPISEVVLKANAN 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEK 219
           D  + E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K
Sbjct: 167 DLLVVEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDK 222

Query: 220 TGTIFLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +     N+D       EL   K+H +         +S  AD+ +       EQ ++E Q 
Sbjct: 223 SDYFIANFDQKNILEQELSLTKAHVVTFSE-----ESTQADYYI------GEQ-YLESQA 270

Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             + M++    I G H  QN L+ + I  I+ A  +     LS F    G   R +  + 
Sbjct: 271 DHEIMKISDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMT 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ 362
                + ++S + N  +   AI   SQ
Sbjct: 328 YNNRRIYNDSKSTNIEAASVAIPSFSQ 354


>gi|229846170|ref|ZP_04466282.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
 gi|229811174|gb|EEP46891.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|209963945|ref|YP_002296860.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum centenum SW]
 gi|226706326|sp|B6IRG1|MURC_RHOCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|209957411|gb|ACI98047.1| UDP-N-acetylmuramate--alanine ligase [Rhodospirillum centenum SW]
          Length = 482

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 131/313 (41%), Gaps = 38/313 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+  +L +PV    ++L  L +L  +         +A+ G+ GKTTT  M+   L
Sbjct: 81  NPEVVAARAAL-VPVVRRAEMLAELMRLKWS---------VAVAGTHGKTTTTSMVAALL 130

Query: 131 SSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                    I G   N +G   T AR+    D+ + E   S  G    L       IAV+
Sbjct: 131 DGAGFDPTIINGGIINALG---TNARLGSG-DWMVVEADESD-GTFTKLPAT----IAVV 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P HL  +   E+   A     E +   G   L  D    + L A++     + I +
Sbjct: 182 TNMDPEHLDFYGTFEKEREAFDRFVENIPFYGFAALCTDHPEVQALVARAD----RRIVT 237

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL------QGKSMEVVHHGI-GYHMAQNMLMTLGI 302
           +G +  AD +    +     ++ +VQ+      + +++E VH  + G H  QN L  +  
Sbjct: 238 YGFNPQADVRAVNVEGDHRGAFYDVQVSERVTGEARTIERVHLPMYGLHNVQNSLAAIA- 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V+I     D  I+A   F    G  +R+          +ID+ Y  +P  ++A   VL  
Sbjct: 297 VAINMGIADEQIRA--SFARFSGVKRRFTRTGESNGVVVIDD-YGHHPVEIQA---VLKA 350

Query: 363 ISPHGEGRRIAVL 375
               G GR IAV+
Sbjct: 351 ARMAGSGRTIAVV 363


>gi|213028581|ref|ZP_03343028.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G
Sbjct: 98  VLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELG 135


>gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
 gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 113/282 (40%), Gaps = 35/282 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP   +  + +DSR +   + F A++G   DG +F+  A   GA   +V  ++   +  L
Sbjct: 23  VPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDELPLRLSPL 82

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTY 137
             P+  + ++   L +  +A R   + +    I A+TG+ GKTT  ++    + S+    
Sbjct: 83  --PMVVIPNLRHRLCE--IAGRFFREPSREMHIAAVTGTNGKTTVSQLFARLVRSVGYDC 138

Query: 138 ACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH--------- 185
             IG+    +  GV  ++   P  +   + E+     G+ + F++  V  H         
Sbjct: 139 GVIGTLGASLDGGVHSSVHTTPDSI--ALQEILAGWAGQAVPFVSMEVSSHALHQGRVNT 196

Query: 186 ----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
                A+ T +   HL     ++    AKA +F   E   T  LN DD F   L A+   
Sbjct: 197 LDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLF-AFESLRTAILNADDPFSRHL-AQRVP 254

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-------EQSWMEVQL 276
            G+  +    +   A+ +L   K          E  W E  L
Sbjct: 255 TGVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEATL 296


>gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 488

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 36/273 (13%)

Query: 17  HSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H +GI  +G VN I  ++DSR+      F AIKG   DG  +I  A+Q GA  V+   D 
Sbjct: 6   HLLGIDIEGDVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADS 65

Query: 75  VASIGSL----SIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTI 128
                 +    ++P+     +   L++LA V  +  SK  T++ +TG+ GKTTT ++L  
Sbjct: 66  AQQHLQIHYEQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQ 125

Query: 129 ALSSIKKTYACIGSYNN---------------HIGVPLTLARMPVD-VDFGIFELGMSHL 172
               +  T A +G+  N                + +  +LA       DF   E+  SH 
Sbjct: 126 WTQLLGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVS-SH- 183

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G ++     V    AV T ++  HL     +E  A+AK  +F  L+    I    D    
Sbjct: 184 GLVQHRVEGVHFSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQIIDADDPIGA 243

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADF--QLRKW 263
             L+   +A+ + T        N DF  Q  +W
Sbjct: 244 AWLRELPNAVAVST--------NPDFSPQQTQW 268


>gi|163746127|ref|ZP_02153486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
 gi|161380872|gb|EDQ05282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
          Length = 466

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 27/133 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L               H+G P  LA    ++  G+ +L  
Sbjct: 122 VVAVTGSNGKSTTSALIHHIL--------------EHVGRPCQLAG---NIGRGVLDLDP 164

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           +  GE+       + T L R   P +AV T ++P HL   +G+    +AK  +F EG   
Sbjct: 165 AVDGEVVVLELSSYQTELARALTPDVAVFTNLSPDHLDRHAGMGGYYAAKRRLFAEGGPD 224

Query: 220 TGTIFLNYDDSFF 232
              I ++  +  F
Sbjct: 225 RAVIGVDEAEGRF 237


>gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 472

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R  A  +A+TG+ GKTTT  ML   L +       +G    +IGV L L  +  + ++ +
Sbjct: 110 RKPAPWLAVTGTNGKTTTVRMLASILRAAGLRTEAVG----NIGVSL-LDAVVGETEYDV 164

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S   ++ +   L R H A +  +AP HL     +E  A+ K  ++EG      ++
Sbjct: 165 LAVELSSY-QLHWAPSL-RAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEG-NTVACVY 221

Query: 225 LNYDDSFFELLKAKSHALGIKTI 247
              D +  +L++      G + I
Sbjct: 222 NVADPATEDLVREADVEEGCRAI 244


>gi|24111536|ref|NP_706046.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           301]
 gi|30061658|ref|NP_835829.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|44888197|sp|Q83MF8|MURC_SHIFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24050295|gb|AAN41753.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30039900|gb|AAP15634.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|281599453|gb|ADA72437.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2002017]
 gi|313646526|gb|EFS10987.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|332762290|gb|EGJ92557.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2747-71]
 gi|332764937|gb|EGJ95165.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-671]
 gi|333022321|gb|EGK41559.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-304]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMCVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
 gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
          Length = 538

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 143/364 (39%), Gaps = 38/364 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMVASI 78
           V G+ +DSR +   + F A+ G    G   +  AV  GA  V+ +         +     
Sbjct: 33  VAGLVLDSRELVCGDVFVALAGAKQHGLAHVEQAVNNGACAVIFDPAGNGRQLAEAFRCD 92

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEML-------- 126
            S  +P+  V+++   L +LA  AR         T+I ITG+ GKT+  + L        
Sbjct: 93  SSTPVPMIAVENLGLKLGELA--ARFYCDPSQFMTVIGITGTNGKTSCSQFLSQMLDDCG 150

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
              T+      K    + +  + + +   LA +  D    +     SH G  +   + V 
Sbjct: 151 IIGTLGWGEWDKLNKTLNTTPDALAIQKILAELLKDKKRTVAMEVSSH-GLEQGRVNGVT 209

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF--LNYDDSFFE-LLKAKSH 240
              AV T I+  HL     ++    AK  +   L++ G  F  +N DD + E ++ A   
Sbjct: 210 FKGAVFTNISRDHLDYHGTMDAYVQAKLAL---LKQPGLAFAAVNLDDGYSERVIAAVPE 266

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLM 298
           ++ +      GK+ ++   +       +   +E  V+ + +   V     G    +N+L 
Sbjct: 267 SVQLWQFSVKGKTADSGECVSAENILHKTDGIEFDVRFRDELQRVQVPLFGDFNVENVLA 326

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L ++  +   +  A+K L+   P  GR +R+    +   F      Y   P ++   +S
Sbjct: 327 VLTVMLAMEVSLQEAVKKLAGIKPVNGRMERFGAETDPMIFV----DYAHTPDALDKVLS 382

Query: 359 VLSQ 362
            L +
Sbjct: 383 SLRK 386


>gi|145633131|ref|ZP_01788863.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145635590|ref|ZP_01791288.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148826248|ref|YP_001291001.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229844906|ref|ZP_04465044.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
 gi|166224693|sp|A5UCW7|MURC_HAEIE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|144986357|gb|EDJ92936.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145267152|gb|EDK07158.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148716408|gb|ABQ98618.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229812287|gb|EEP47978.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
 gi|122314675|sp|Q0AJD9|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
          Length = 470

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-LG 168
           I+AITGS GKTT   M+      + +          +IG+    A M   +D G +  L 
Sbjct: 115 ILAITGSNGKTTVATMV----GEMARNTGWDVEVAGNIGLAALDALMQ-RIDTGKWPHLW 169

Query: 169 MSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           +  L   +   T  +RP+ AV+  ++  HL  +  IEE A+AKA IF     +    LN 
Sbjct: 170 VLELSSFQLETTSSLRPNAAVVLNLSEDHLDRYRIIEEYAAAKARIFPDPHNSCVQVLNR 229

Query: 228 DDS 230
           +D+
Sbjct: 230 EDA 232


>gi|330501922|ref|YP_004378791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
 gi|328916208|gb|AEB57039.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AITGS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 109 AKAPIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLADDVELYVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 164 ELSSFQLET----TDQLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVI 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           N DD+    L A        T + FG  K  DF+
Sbjct: 217 NRDDALSRPLIADQ-----VTSWEFGLGK-PDFK 244


>gi|301169879|emb|CBW29483.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           10810]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|154249900|ref|YP_001410725.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153836|gb|ABS61068.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 28/226 (12%)

Query: 112 AITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           A+TG+ GK+TT  ML  +L  +    Y  +G+ +N +             D  ++EL  S
Sbjct: 111 AVTGTDGKSTTTSMLANSLIDLGADPYVFLGALHNKLE---HGNYRHGKSDIAVYELDES 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G       L RP   +IT I   H+ N+  +E   S+    FE L K     + + D 
Sbjct: 168 QPG-----YELFRPEFLIITNIREDHVENYQSLEHYYSS----FETLIKNSKFVVTFADE 218

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                         K   +FG   + DF+L + KQ      + +       +      GY
Sbjct: 219 -----------KKFKGNVTFG-VYSGDFKLVERKQEGFYQTVTIFTPYGERKFFLPVPGY 266

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           H A N L  + ++S +  ++D   K L  F      G+R+  + + 
Sbjct: 267 HNALNALAVISLLSSIGYNID---KVLDSFEDFRLPGRRFNVSYDN 309


>gi|86738998|ref|YP_479398.1| Mur ligase [Frankia sp. CcI3]
 gi|86565860|gb|ABD09669.1| Mur ligase [Frankia sp. CcI3]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 14/148 (9%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ++G+ GKTTT  +L  AL ++    +  G  N   GV   L+R P D    +       +
Sbjct: 63  VSGTNGKTTTTRLLARALGTLGPVKSNSGGANMAPGVLAALSRPPFDAAAAL------EV 116

Query: 173 GEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            EI +L  + R   P + ++  I+   L   +    IA+   E+   L  T T+  N DD
Sbjct: 117 DEI-WLPKVAREISPRVVLLLNISRDQLDRSNETRRIAAMWRELGSELRDT-TVVANVDD 174

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD 257
                  A  H    +   S G++  AD
Sbjct: 175 PLVAWAAAGWHR---QVWVSAGQNWTAD 199


>gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS5005]
 gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes M1 GAS]
 gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS5005]
          Length = 481

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 24  QGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           QGF    +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L 
Sbjct: 31  QGFSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELG 83

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           IPV  V D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 84  IPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|330813732|ref|YP_004357971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486827|gb|AEA81232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 428

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +K  IIAITG+ GK+T  ++L  A+    K    +G+Y    G P          +  I 
Sbjct: 106 NKNKIIAITGTNGKSTFCKLLYHAIKGKDKNTFLLGNY----GKPALSYNSKSIKNIYIL 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +   +FL    + H   +  I+P HL          + K +IF+ L   G  F+
Sbjct: 162 ELSSYQIEYSKFL----KFHACAVLNISPDHLERHKTFSNYINIKLKIFDHLLPGGKGFV 217

Query: 226 NYDDSFFELLKAKSHALGIKTI 247
           N + S+   ++ K +   +  I
Sbjct: 218 NENFSYNNRIQPKKNVRKVSNI 239


>gi|322513881|ref|ZP_08066960.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
 gi|322120280|gb|EFX92227.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
          Length = 436

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 28/257 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T   ++T     + K          +IGVP+ L+ +  + +  +
Sbjct: 103 EAKAPIIAITGANGKSTVTTLVT----EMAKQAGIKVGMGGNIGVPV-LSLLNEEYELFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L      T  ++  +A I  I+  H+  ++  +EE   AK  I++  E    +
Sbjct: 158 LELSSFQLE----TTSSLKAVVATILNISEDHMDRYNNSVEEYRLAKLRIYDNAE---NV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D     L+ ++    +K +  F +  NA++ +R     S    +   +  K M +
Sbjct: 211 IVNGEDRLTYPLETQA----VKKLIRFAE-HNAEYTMRNGILYSGDDAI---IPTKEMLI 262

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L+ + +        +  +KAL V+    G   R++          ++
Sbjct: 263 S----GRHNEMNALVAMALAETAGIPREGIVKALQVYG---GLEHRFQAVKTNDGVRWVN 315

Query: 344 ESYNANPASMKAAISVL 360
           +S   N  S  AA++ L
Sbjct: 316 DSKATNVGSTVAALNGL 332


>gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 481

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 24  QGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           QGF    +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L 
Sbjct: 31  QGFSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELG 83

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           IPV  V D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 84  IPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|332531947|ref|ZP_08407831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038574|gb|EGI75017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 137/312 (43%), Gaps = 55/312 (17%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           +DSR+  P   +     P+ D H   L   +      + +++M+     LS+ +  V + 
Sbjct: 38  VDSRATPPGIDWLKEHAPNLDTHFGNLDDAE------LCSSNMIIISPGLSLKIPAVANA 91

Query: 92  LGA----LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           + A    +  + + AR+ +K  ++A+TGS GK+T   ++T+A   +K+       Y   +
Sbjct: 92  INAGVEVIGDVELFARINTKP-VVAVTGSNGKST---VVTLAYEVLKE-----AGYKVAL 142

Query: 148 GVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           G  +  A + + + DF ++ L +S   ++   T L +P  A +  ++  HL  +   +  
Sbjct: 143 GGNIGTAVLDLLNDDFDVYVLELSSF-QLDTTTSL-KPVSATVLNVSEDHLDRYDSYQAY 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +K  I++G E    I +N DD     ++      G   + SFG ++  D+ L +    
Sbjct: 201 IDSKLSIYDGAE---LIVVNADD-----IQTHPVERGTTPLISFG-AQQGDYHLAQHN-- 249

Query: 267 SEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            E  +M   L+G +   V     +G H   N L TL ++++L+              P E
Sbjct: 250 GETHFM---LKGDAFLPVDTLAVVGKH---NYLNTLAVMALLS--------------PFE 289

Query: 325 GRGKRYRCALNQ 336
               +Y+ AL Q
Sbjct: 290 VSKAQYKNALGQ 301


>gi|283850516|ref|ZP_06367804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
 gi|283574087|gb|EFC22059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
          Length = 442

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 28/170 (16%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVG 118
           GA LVV++  + A+          + D L A     V + L      +   I+A+TGS G
Sbjct: 75  GADLVVLSPGIRAA---------SLTDCLAACPGAQVVSELELASWFTAEPIVAVTGSNG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFELGMSHLGEI 175
           KTTT  +++  L +  +     G    +IG PL+   LA  P DV   + E+    L  +
Sbjct: 126 KTTTVMLISHLLEAAGRKVFTGG----NIGTPLSEYVLAGDPADVV--VLEVSSFQLQLV 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           R      RP + V+   +P HL   + ++E   AK  +F+  ++ G + L
Sbjct: 180 RTF----RPRVGVLLNFSPNHLDWHADLDEYLDAKLNLFKA-QRPGDLAL 224


>gi|224368385|ref|YP_002602548.1| MurC [Desulfobacterium autotrophicum HRM2]
 gi|259509767|sp|C0Q8P4|MURC_DESAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|223691101|gb|ACN14384.1| MurC [Desulfobacterium autotrophicum HRM2]
          Length = 456

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 141/372 (37%), Gaps = 42/372 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA++G+ GKT+T  M+   L+         +G     IG      +       G + +  
Sbjct: 108 IAVSGAHGKTSTTAMIATILNQAGLDPTVVVGGLLKSIGTNAHHGK-------GDYIVAE 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL +   P IA +T I   HL  +  IE+I     +    +   G   L  D+
Sbjct: 161 ADESDGSFLKYA--PAIAAVTNIDLEHLDFYKDIEDIKDNFVKFINSVPFYGLAVLCLDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHG 287
              + +  +  A       +FG S  AD   R  +    + +  V + GK +  ++  + 
Sbjct: 219 EHIQAILPRITA----RYTTFGLSAQADLAARGIRFEGRRGYFTV-VHGKEVLGDITLNL 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D     +AL      EG  +R      +   T++D+ Y 
Sbjct: 274 SGKHNISNALAAIAVALELKVDFSVIKEALEQI---EGVKRRLEIKGERNSITVVDD-YG 329

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVL 396
            +P  +K  ++ + +            PH   R  A+        E +++F+  DL  VL
Sbjct: 330 HHPTEVKTTLAAVREGWPDKRVVVVFQPHRYSRTKALF------DEFTRAFYQSDLLFVL 383

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +Y  S   + G   L L + +    H  V   +  +     +  +L  GD+V+   +  
Sbjct: 384 PIYAASEQPIDGIDSLKLCNGIQEHGHKNVICVKDFESCLSILSDTLEPGDLVLTLGAGD 443

Query: 455 CGFYRLINLLLE 466
              Y L   LLE
Sbjct: 444 V--YNLGETLLE 453


>gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
 gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P +++I  ++P HL+    +E    AKA IF+  +K     LNYDD     L +K ++
Sbjct: 177 KPRVSMILNLSPDHLNRHHTMENYIMAKANIFKNQDKNDFTILNYDDEAVRALSSKCNS 235


>gi|145630239|ref|ZP_01786021.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145641273|ref|ZP_01796853.1| D-alanine--D-alanine ligase [Haemophilus influenzae R3021]
 gi|144984520|gb|EDJ91943.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145274110|gb|EDK13976.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.4-21]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|330815444|ref|YP_004359149.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367837|gb|AEA59193.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 149/365 (40%), Gaps = 40/365 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A   +  T+         IG  L  A     +  G F + 
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGSGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +  
Sbjct: 160 EADESDASFLN--LYPVIEVITNIDEDHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
           DD +  +++   S     K +  +G S +A+ +  +      +    V   G   + VV 
Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAEVRAEQVDARDGRMHFTVIRDGLAPLRVVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLI 342
           +  G H  QN L  + I + L    D AI +AL+ F+    R +RY    A + G +TLI
Sbjct: 273 NLPGLHNVQNALAAIAIATDLGV-ADAAIQQALADFNGVGRRFQRYGELAAADGGSYTLI 331

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
           D+ Y  +P  M A I+      P   GRR+ +             F  D   VLS  +  
Sbjct: 332 DD-YGHHPVEMAATIAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVNVLSTVDAL 386

Query: 401 -ISHVWLSGFHVL--ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++ V+ +G   +  A  +AL R+      +   +   +D +   +   +  GDVV+   
Sbjct: 387 VLTEVYAAGEAAIPTASGEALSRALREIGRVDPSFVAGVDEVPAALARVVRAGDVVITMG 446

Query: 452 SNSCG 456
           + S G
Sbjct: 447 AGSIG 451


>gi|311280929|ref|YP_003943160.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
 gi|308750124|gb|ADO49876.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M       +   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM-------VASIYAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGNSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  + Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSDDADVRVEDYSQIGAQGHFTLIR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K+ + VV +  G H A N    + + +    D ++ ++AL+ F   +G G+R+
Sbjct: 277 QDKAVLNVVLNAPGRHNALNAAAAVAVATEEGIDDESILRALASF---QGTGRRF 328


>gi|182439212|ref|YP_001826931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467728|dbj|BAG22248.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R  A  +A+TG+ GKTTT  ML   L +       +G    +IGV L L  +  + ++ +
Sbjct: 114 RKPAPWLAVTGTNGKTTTVRMLASILRAAGLRTEAVG----NIGVSL-LDAVVGETEYDV 168

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S   ++ +   L R H A +  +AP HL     +E  A+ K  ++EG      ++
Sbjct: 169 LAVELSSY-QLHWAPSL-RAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEG-NTVACVY 225

Query: 225 LNYDDSFFELLKAKSHALGIKTI 247
              D +  +L++      G + I
Sbjct: 226 NVADPATEDLVREADVVEGCRAI 248


>gi|119511605|ref|ZP_01630712.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
 gi|119463766|gb|EAW44696.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
          Length = 495

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 138/341 (40%), Gaps = 57/341 (16%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L  P+    DVL AL          S    IA+ G+ GKTTT  M              I
Sbjct: 116 LGCPILHRSDVLAAL---------ISDYHSIAVAGTHGKTTTSSM--------------I 152

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--------HLVR--PHIAVIT 190
           G      G+  T+    V  +   +E G + LG+ ++L          LV+  P I +IT
Sbjct: 153 GYMLLEAGLDPTII---VGGEVDAWE-GNARLGQSQYLVAEADESDGSLVKHAPEIGIIT 208

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF--FELLKAKSHALGIKTI- 247
            I   H  ++  +EE+ +    IF+    +    ++  D +   +LL+         TI 
Sbjct: 209 NIELDHPDHYETLEEVVN----IFQKFADSCKTLISCIDCYQVRDLLRNSGGDRFKPTIT 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSIL 306
           YS     +AD+        ++ +   V  +GK++ V+    +  H   N L  + +   L
Sbjct: 265 YSLNPETDADYTATNIDYRADGTTALVWEKGKALGVLKLRLLSRHNLSNALSAVAVGRAL 324

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +  T  K ++ F   EG  +R+      G  T ID+ Y  +P+ ++  ++  +++   
Sbjct: 325 GLEFGTIAKGIATF---EGARRRFEFRGEVGGITFIDD-YAHHPSEIRVTLAA-ARLQAR 379

Query: 367 GEGRRIAVLGD------MCEMGELSQSF-HIDLAEVLSLYN 400
            E R +A+            + E ++SF H DL  +  +Y+
Sbjct: 380 PEQRVVAIFQPHRYSRTFTFLAEFAESFTHADLVVLTDIYS 420


>gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 33/284 (11%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L+ P I V+T I   HL  +   EEI  A       +   G   +  DD   + +  + +
Sbjct: 170 LLLPIINVVTNIDLDHLDYYRSFEEIEHAFVTFMNNVPFYGMNVVCGDDPGVQRVLPRVN 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
              I   Y F  S +       W    +C   +  +V   G+ + EV+    G H   N 
Sbjct: 230 RQVIT--YGFESSNHI------WAEIIECGIINRFKVIAHGECLGEVILTQPGKHNILNA 281

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G+   +       I+ L+ F   +G G+R+     +   T+ID+ Y  +P  + A 
Sbjct: 282 LAAIGVALEVGISPKCCIEGLANF---KGVGRRFEYKGEKNGITVIDD-YGHHPIEVAAT 337

Query: 357 ISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +    ++           PH   R  A+ G+ C++  LS    + L E+   Y      +
Sbjct: 338 LETARKVFPDRRIVVAFQPHRFSRTQALFGEFCQV--LSTVDKLLLTEI---YPALEKPI 392

Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            G +   L   + +   I V Y   +D +F  +   L  GDV++
Sbjct: 393 PGINSQNLAQGIQQISKIDVTYYPDIDAVFHALPHVLCAGDVLI 436


>gi|94498175|ref|ZP_01304736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
 gi|94422305|gb|EAT07345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 10/127 (7%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           ++G +   A+A        ++ ITG+ GK+TT  ++   +   +  Y  +   N  IG+P
Sbjct: 92  IIGDIELFALARPTLPPHKVVGITGTNGKSTTTALIHHIIE--QAGYPTVMGGN--IGLP 147

Query: 151 LTLARMPVDVDF---GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           + L++ P++ +    G++ L +S   +I  LTH +   +AV+  I P HL  + G E   
Sbjct: 148 I-LSQPPLEPNLKGAGVYVLELSSY-QID-LTHSLDCDVAVLLNITPDHLDRYDGFEGYV 204

Query: 208 SAKAEIF 214
           ++KA +F
Sbjct: 205 ASKARLF 211


>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
 gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
          Length = 516

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  +S++++  + F AI+G   DGH +I  A ++G    +V  D V     L +   
Sbjct: 30  IQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAKKQGCYACIVE-DFV----DLDVAQI 84

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V +   AL+K++     +      II IT + GKTTT  ML       KK Y   GS
Sbjct: 85  KVKNSRAALSKVSHNYYGKPSEDLDIIGITATNGKTTTSFML-------KKIYEEAGS 135


>gi|149371575|ref|ZP_01890991.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
 gi|149355202|gb|EDM43762.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 33/107 (30%)

Query: 106 SKATIIAITGSVGKTTT--------KEMLTIAL-SSIKKTYACIGS---YNNHIGVPLTL 153
           + AT++ ITGS GKTTT        KE L +AL  +I K++A   S   YNN +   L L
Sbjct: 101 TDATVVGITGSNGKTTTATLTFELLKEELNVALGGNIGKSFAEQVSEEKYNNFV---LEL 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           +   +D   GI +                 PHIAV+T ++P HL  +
Sbjct: 158 SSFQLD---GIKDFA---------------PHIAVLTNLSPDHLDRY 186


>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus
          castenholzii DSM 13941]
 gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus
          castenholzii DSM 13941]
          Length = 515

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 7  FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           HDLL+ +   +        +  I  DSR++ P   F A +G H DGH +I  A+++GA 
Sbjct: 5  LHDLLRTLCDPAHLPRANPAITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERGAA 64

Query: 67 LVVVNTDMVASIGSLSIPVF 86
           VV      A  G + +P  
Sbjct: 65 AVVYEDP--AWDGRIPVPAL 82


>gi|332160413|ref|YP_004296990.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607126|emb|CBY28624.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664643|gb|ADZ41287.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 111/271 (40%), Gaps = 53/271 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 91  IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 130

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 131 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 189

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 190 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 245

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + D  ++AL+ F   +G G+R+    N
Sbjct: 246 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIEGDDILRALAGF---QGTGRRFDFLGN 302

Query: 336 ---------QGFFTLIDESYNANPASMKAAI 357
                    +G   L+D+ Y  +P  + A I
Sbjct: 303 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATI 332


>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           AVI  I P HL     +E  ++AK  IF   E T T  LNYDD     ++A+
Sbjct: 183 AVILNITPDHLDRHHTMEAYSAAKERIFSNQEATDTAVLNYDDDRVRNMQAR 234


>gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 527

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 143/374 (38%), Gaps = 42/374 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+++ ++ + P + F A+ G    G DF   AV++GA  V+ + D  +      +PV
Sbjct: 57  LVTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGAVAVLTDEDGASRPELRDVPV 116

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               D   AL  L+  V      +  +  +TG+ GKTTT  M+   L +  +    +G+ 
Sbjct: 117 LVHRDPRAALGALSARVYGEPAQRVALWGVTGTSGKTTTSYMIESCLRAEGRVTGLVGTV 176

Query: 144 NNHIG------------VPLTLARMPVDVDFGIFE---------LGMSHLGEIRFLTHLV 182
              I              P   A + V V+ G+ +         L +  +G   F     
Sbjct: 177 ETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGAGFA---- 232

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +   T ++  HL     +E+   AKAE+F+G  +   + +   D  +     K   +
Sbjct: 233 ---VGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARREVVCV---DGEWGRRLVKPGTV 286

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +      G +      +R      EQ++      G  + V     G     N L+ +G 
Sbjct: 287 TVSATAPVGGATWTASGVR-VSATGEQTFTAHGPDGLELAVALRLPGDFNVANALLAIGC 345

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +       +  ++ L+        G+  R  + Q F  ++D  Y+  PA++   +  L  
Sbjct: 346 LHASGVGAEAIVRGLAEVQVP---GRMQRVDVGQDFTAVVD--YSHKPAAV---VLALDA 397

Query: 363 ISPHGEGRRIAVLG 376
           +     GR I VLG
Sbjct: 398 VRARATGRVITVLG 411


>gi|171742515|ref|ZP_02918322.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
 gi|171278129|gb|EDT45790.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
          Length = 489

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  I ITG+ GKT+T EM +  L++   T   +G    +IG  ++ A +    D    EL
Sbjct: 113 ARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG----NIGKAVSHAAVDPANDVLCVEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +    A IT IA  HL    GI+  A+ KA++F    K   +  N 
Sbjct: 169 SSFQL----HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAKVFHRASK--ALVYNA 222

Query: 228 DD-SFFELLKAKSHALGIKTI 247
           DD    EL +    A G + I
Sbjct: 223 DDIRVTELAERAETAEGCRRI 243


>gi|302530676|ref|ZP_07283018.1| predicted protein [Streptomyces sp. AA4]
 gi|302439571|gb|EFL11387.1| predicted protein [Streptomyces sp. AA4]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL    T++ +TG+ GKTTT  MLT AL ++ +        N   G+   LA  P D  +
Sbjct: 48  RLGRDRTVVIVTGTNGKTTTSLMLTRALEALAEVAHNGDGANMPDGLVAALAARP-DAPY 106

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+  ++   + ++   V+P   V+  ++   L     +  +       F GL +T  
Sbjct: 107 AVLEVDETY---VPWVAEQVQPAALVLLNLSRDQLDRVGEVRMMERDLRAAFAGLSRT-V 162

Query: 223 IFLNYDD 229
           +  N DD
Sbjct: 163 VVANCDD 169


>gi|257466675|ref|ZP_05630986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917828|ref|ZP_07914068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691703|gb|EFS28538.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 433

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 21/202 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + ++ + EL    L  +   T    P+I+++T + P HL+ +  +++    K  I +  +
Sbjct: 139 NYEYAVLELSSYQLENVYEFT----PYISLVTNLTPDHLTRYETLKDYYDTKFRICQNQK 194

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEV-QL 276
           +  + FL Y+    EL K ++   G K   S  K ++AD  +R  K    E+  M+V +L
Sbjct: 195 EENSFFL-YNIDHEELRKRENLMKGKKI--SLSKEQDADTCVRNGKIIFQEEEIMQVSEL 251

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K         G H  +N L  +    +L  D     + L    P E R +R       
Sbjct: 252 SLK---------GNHNLENSLFIITAGKLLGLDTKVIREFLMNTEPLEHRMER---CFQY 299

Query: 337 GFFTLIDESYNANPASMKAAIS 358
           G    I++S   N  S K A+ 
Sbjct: 300 GKVQFINDSKGTNIDSAKFALE 321


>gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 510

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 34/267 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSL 81
           + FV+ +S +S+ I     FF  KG ++   D+++ AVQ G  + +     D+ A +G +
Sbjct: 37  KQFVDHLSYNSQDITKNTLFFC-KGLNF-KKDYLVDAVQNGLSIYISEQPYDVPADLGII 94

Query: 82  SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEMLTIA------ 129
                 V DV  A+  L++A     ++K  +I  TG+ GKTT     K +LT A      
Sbjct: 95  ------VSDVKKAMAILSMAFYNYPQNKLKVIGFTGTKGKTTAAYFAKSILTNATKGKTA 148

Query: 130 -LSSIKKTYACIGSYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLGEIRFLTHLVR 183
            LS++  T      + + +  P  L L RM    V  +   F + +S         + + 
Sbjct: 149 MLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAVQNNMTHFVMEVSSQAYKIDRVYQLF 208

Query: 184 PHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K +I   +  +  I LN +  +F+LLK  +  
Sbjct: 209 YDVGIFLNITPDHISPIEHPTFDDYFYCKRQI---IAHSKQIILNRETDYFQLLKETADY 265

Query: 242 LGIKTI-YSFGKSKNADFQLRKWKQCS 267
             + TI Y    +   D+  +K  Q S
Sbjct: 266 FNVPTIVYGNQPTTEVDYWYQKKSQDS 292


>gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
 gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
          Length = 481

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLSAISQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|257452945|ref|ZP_05618244.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           3_1_5R]
 gi|317059486|ref|ZP_07923971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_5R]
 gi|313685162|gb|EFS21997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_5R]
          Length = 433

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 21/202 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + ++ + EL    L  +   T    P+I+++T + P HL+ +  +++    K  I +  +
Sbjct: 139 NYEYAVLELSSYQLENVYEFT----PYISLVTNLTPDHLTRYETLKDYYDTKFRICQNQK 194

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEV-QL 276
           +  + FL Y+    EL K ++   G K   S  K ++AD  +R  K    E+  M+V +L
Sbjct: 195 EENSFFL-YNIDHEELRKRENLMKGKKI--SLSKEQDADTCVRNGKIIFQEEEIMQVSEL 251

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K         G H  +N L  +    +L  D     + L    P E R +R       
Sbjct: 252 SLK---------GNHNLENSLFIITAGKLLGLDTKVIREFLMNTEPLEHRMER---CFQY 299

Query: 337 GFFTLIDESYNANPASMKAAIS 358
           G    I++S   N  S K A+ 
Sbjct: 300 GKVQFINDSKGTNIDSAKFALE 321


>gi|170720131|ref|YP_001747819.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida W619]
 gi|229620051|sp|B1J3L3|MURC_PSEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169758134|gb|ACA71450.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida W619]
          Length = 482

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 144/365 (39%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L    A   +  T+         IG  LT A     +    + + 
Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +  +      +   ++G  + AD +     Q   Q+   V  + +  +EV  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFCEEADIRAINVSQKGMQTHFTVLRRDREPLEVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNALATIAIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL   N+ 
Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWP---SRRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451
               V+ +G   +   D+      +     +D +++         ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILLCQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDVG 461


>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAO1]
 gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PA7]
 gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAb1]
 gi|30316126|sp|Q9HVZ9|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PA7]
          Length = 448

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 20/173 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   + 
Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q  
Sbjct: 214 VNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFD 260


>gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
 gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 103/270 (38%), Gaps = 55/270 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGVPLT---LARMPVDVD 161
           IIAITGS GKTTT  ++          Y C  S        +IG+P+    L R     D
Sbjct: 110 IIAITGSNGKTTTTSLV---------GYLCEQSGLDTVVAGNIGMPVLEAWLVRGGKSAD 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L    +L        A    I+  HL  +  + + A  K  IF G     
Sbjct: 161 VWVLELSSFQLETTDYLD----ADAATCLNISEDHLDRYDDLLDYARTKDMIFNG---KA 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------KWKQCSEQSWMEVQ 275
              LN DD+F   +K ++     + I+ F  S++ D+ L       K +        ++ 
Sbjct: 214 IQVLNADDAFCCAMKREN-----RPIHYFSLSQSIDYYLDSVSGSLKHQGADLMPQTDIP 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           LQG            H   N+L  L +   V +  AD+   +K + VF   +G   R   
Sbjct: 269 LQGS-----------HNVANVLAALALCESVGLARADL---LKYIRVF---KGLPHRVEK 311

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +     ID+S   N  +  AAI  L +
Sbjct: 312 VGEKNGVIFIDDSKGTNVGATVAAIVGLPE 341


>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           bromii L2-63]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-----DVDFGI 164
           IIA+TGS GKTTT  +++  L +          +N H+G  +    +P      D D  +
Sbjct: 118 IIAVTGSDGKTTTTTIISEFLKA--------AGFNVHLGGNIGKPLLPEIESVNDDDCAV 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            EL    L  +R       P IAV+T +AP HL     ++E   +K  I
Sbjct: 170 VELSSFQLISMR-----KSPDIAVVTNLAPNHLDIHKDMQEYIDSKKNI 213


>gi|325980953|ref|YP_004293355.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
 gi|325530472|gb|ADZ25193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
          Length = 471

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 52/301 (17%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L IPV G  D++  L   A+      K  ++AITGS GKTT   M+   L       A  
Sbjct: 90  LGIPVIG--DLV--LFSWALEQNKLQKPKVLAITGSNGKTTVTSMVGAMLRKSGWDVAVA 145

Query: 141 GSYNNHIGVPLTLARMPVDVDFG------IFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           G    +IG P  L  +   VD G      + E     L      TH +   +A +  ++ 
Sbjct: 146 G----NIG-PAILNVLMEQVDAGNWPQAWVLETSSFQLET----THNLNADVATVLNVSE 196

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFG 251
            HL  ++ +++  +AK +IF  L + G++    LN +DS    +     AL      +FG
Sbjct: 197 DHLDRYTCMQDYIAAKLKIF--LRENGSVCTQILNRNDSGISEM-----ALADGKQITFG 249

Query: 252 ---KSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIV 303
                 +ADF +++     +  W+   ++G     K+ E+V +G+  H A N L  L + 
Sbjct: 250 WDIPPTDADFGIQR---DGDDLWL---MEGPHRLMKTSELVVNGL--HNAVNALAALAMC 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLS 361
             L   ++  + AL     +E RG  +R      F   T  D+S + N  +  AA++ + 
Sbjct: 302 RALDIPMNPLVSAL-----REFRGLPHRMEKVAAFNGVTFFDDSKSTNVGATIAALNGMK 356

Query: 362 Q 362
           Q
Sbjct: 357 Q 357


>gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 483

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 25/171 (14%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++P++G          + +A RLR +     +A+TG+ GKTTT  ML   L +     A 
Sbjct: 101 NVPIWG---------DVELAWRLRGEDAPPWLAVTGTNGKTTTVRMLAAILEAAGLRTAA 151

Query: 140 IGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +G    +IGV L    L   P DV     EL    L         +R H   +  +AP H
Sbjct: 152 VG----NIGVSLLDIVLGDEPYDV--LAVELSSYQL----HWAPSLRAHSGAVLNLAPDH 201

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           L     +   A+ K  I+EG  +   ++   D +  +L++A     G + I
Sbjct: 202 LDWHGSMAAYAADKGRIYEG-NQVACVYNVADPATEDLVRAADVEEGCRAI 251


>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++  + P HL+    +E  A+AKA IF        + LN DD     +K  +H+  
Sbjct: 177 PLGAIVLNVTPDHLARHKTMENYAAAKARIFMNQNPENFVVLNDDDPIVRAMKKDAHSKV 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMT 299
           +           A F         E +     L GK+  V+     H  G H  +N+L  
Sbjct: 237 LSISQHHKVDSGAYF---------EGNTCYAVLDGKATPVIDTEHIHIKGSHNIENILAV 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L  +V+     +  FH  E R +R     +  F+   ++S   N  S+  A+  
Sbjct: 288 IALTYALGVEVEHIKHIIEQFHGVEHRLERVTTFHDVTFY---NDSKATNTDSVVKALDA 344

Query: 360 LSQ 362
             +
Sbjct: 345 FDK 347


>gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
 gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 142/376 (37%), Gaps = 63/376 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 185 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G +++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 230 AILCIDDPVIRELIPRVS-----RQVITYGFAEDADVRIENYRQQGQQGKFTVVRKGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           +++  +  G H   N L     +++ T D  +    L      +G G+R+          
Sbjct: 285 LDITLNIPGRH---NALNASAAIAVATEDDISDEAILRAMANTQGTGRRFDHLGEFETGN 341

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I                 PH   R   +  D   + E   
Sbjct: 342 GVAMLVDD-YGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLE--- 397

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLFIQSS 440
              +D+  +L +Y+     ++G    +L   + RS      I V  S+T+  +   I   
Sbjct: 398 --QVDVLIMLDVYSAGEKPIAGADGRSLCRTI-RSRGKIDPIFVPDSQTLPSVLANI--- 451

Query: 441 LVDGDVVVVKSSNSCG 456
           L DGD+V+ + +   G
Sbjct: 452 LQDGDLVLTQGAGDVG 467


>gi|332670125|ref|YP_004453133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi
           ATCC 484]
 gi|332339163|gb|AEE45746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi
           ATCC 484]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  +A+TG+ GKTTT  ML   L +  +    +G    ++G P+ LA      D    EL
Sbjct: 105 APWLAVTGTNGKTTTVGMLESVLRAAGRDAVAVG----NVGTPVVLAATDPARDVLAVEL 160

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               L     ++       A +  +AP HL     +E  A+AK  +FE
Sbjct: 161 SSFQLHHTSSMSA----QAAAVLNVAPDHLDWHGSMEAYAAAKGRVFE 204


>gi|297161285|gb|ADI10997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           bingchenggensis BCW-1]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 25/170 (14%)

Query: 83  IPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV+G          + +A RLR       +A+TG+ GKTTT  ML   L +     A +
Sbjct: 98  VPVWG---------DVELAWRLRGADAPPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAV 148

Query: 141 GSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           G    +IGV L    L   P DV      + +S   ++ +   L R H   +  +AP HL
Sbjct: 149 G----NIGVSLLDVVLGDEPYDV----LAVELSSY-QLHWAPSL-RAHSGAVLNLAPDHL 198

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
                +   A+ K  I+EG  +   ++   D +  +L++A     G + I
Sbjct: 199 DWHGSMAAYAADKGRIYEG-NQVACVYNVADPATEDLVRAADVEEGCRAI 247


>gi|163941652|ref|YP_001646536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           weihenstephanensis KBAB4]
 gi|226711883|sp|A9VU74|MURD_BACWK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|163863849|gb|ABY44908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 31/263 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A++  + +  +
Sbjct: 110 SAAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQLAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA IF+   +T    
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETDYSI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSM 281
           +N DD+  +++   +++ G K ++S              K+  + ++++   +  +G+ +
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFS------------TTKEIEDGAYIKDNALYFKGEKV 267

Query: 282 EVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V   +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VKVSDIVLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
              ++S   N  + + A+S  +Q
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ 347


>gi|330828046|ref|YP_004390998.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
 gi|328803182|gb|AEB48381.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 180/429 (41%), Gaps = 56/429 (13%)

Query: 54  HDFILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           H F+ H+ +  +GA +VVV+T +      + +   L IPV    ++L  L       R R
Sbjct: 66  HIFVGHSAEHVEGASVVVVSTAIKQDNPELLAARELRIPVVRRAEMLAEL------MRFR 119

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                IAI G+ GKTTT  ++ +I   + +     IG   N  G   T AR+        
Sbjct: 120 HG---IAIAGTHGKTTTTSLVASIYAEADRDPTFVIGGLLNSAG---TNARL----GSSR 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL HL +P ++++T I   H+  + G   ++ +   E    L   G  
Sbjct: 170 YLIAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFSKLKATFIEFLHNLPFYGLA 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSME 282
            +  DD     +  +      +   ++G S +AD Q+  + Q +  S   V+  +   + 
Sbjct: 228 VVCIDDPVIRGMLPEI----ARPTLTYGLSDDADVQVLDFVQTTNHSCFRVRRKEAGELL 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338
           V  +  G H A N    + + +      +  I AL+ F   EG G+R++        +G 
Sbjct: 284 VTLNLPGIHNALNAAAAIAVATEDGVSDEAIISALAKF---EGVGRRFQQYGEFETGRGK 340

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D+ Y  +P+ +K  I+      P  E R + V          ++  + D A+VLS 
Sbjct: 341 AMLVDD-YGHHPSEVKVTINAARAGWP--EKRLVMVF--QPHRYTRTRDLYEDFADVLSK 395

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            ++     V+ +G   +   D  AL RSI         +  T D +   +   + +GD+V
Sbjct: 396 VDVLVMLEVYAAGEEPIPGADGRALCRSIRSRGNLEPIFVATPDDVPAVLADLIGEGDLV 455

Query: 448 VVKSSNSCG 456
           + + + + G
Sbjct: 456 LTQGAGNVG 464


>gi|82775498|ref|YP_401845.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella dysenteriae Sd197]
 gi|309787233|ref|ZP_07681845.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
 gi|109892738|sp|Q32K01|MURC_SHIDS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81239646|gb|ABB60356.1| UDP-N-acetyl-muramate:alanine ligase [Shigella dysenteriae Sd197]
 gi|308924811|gb|EFP70306.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  + V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPIRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|238784568|ref|ZP_04628575.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
 gi|238714534|gb|EEQ06539.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 111/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + D  ++AL+ F   +G G+R+    N
Sbjct: 277 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIEDDDILRALAGF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A + 
Sbjct: 334 FPLAPVNGKEGSVMLVDD-YGHHPTEVDATVK 364


>gi|293392858|ref|ZP_06637176.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
 gi|291424717|gb|EFE97928.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + + ++G S +AD ++  + Q   Q    +  
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHVTTYGFSDDADVRIESYSQRGPQGHFTLSR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  M V  +  G H A N    + + +    D D  ++AL+ F   +G G+R+
Sbjct: 277 QDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIDDDDILRALAGF---QGTGRRF 328


>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +N   VA  +      I ITG+ GKTT   +L+  L            +  +IG P
Sbjct: 106 VVGEIN---VAWEILKDTNWIGITGTNGKTTVTHLLSHILCD----NGLYAPFAGNIGTP 158

Query: 151 LT---LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           L     ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   
Sbjct: 159 LCKYACSKKLEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYF 214

Query: 208 SAKAEIFEGLEKTGTIFLNYDD 229
           + K  +   LEK+     NYDD
Sbjct: 215 NIKKSL---LEKSDFRIYNYDD 233


>gi|219870392|ref|YP_002474767.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
 gi|254766005|sp|B8F3B7|MURC_HAEPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219690596|gb|ACL31819.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)

Query: 56  FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +  +GA +VV ++ +      VA+     IPV      +     LA   R R  
Sbjct: 67  FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPV------IQRAQMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDV 160
              IAI G+ GKTTT  M+++  +   +  T+   G       N H+G    L       
Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKSAGKNAHLGASRYL------- 170

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
                 +  +   +  FL HL +P ++V+T I P H+  + G  E++          L  
Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278
            G   +  DD   E +   +  +G + + S+G S+ AD+++  ++Q   Q  +  V   G
Sbjct: 223 YGLAVMCADD---ETVMEIAPKVG-RQVISYGFSEKADYRIEDYQQTGFQGHYTVVCPTG 278

Query: 279 KSMEVVHHGIGYH 291
           + +E++ +  G H
Sbjct: 279 ERIEILLNVPGRH 291


>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa LESB58]
 gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 448

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 20/173 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   + 
Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q  
Sbjct: 214 VNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFD 260


>gi|306822428|ref|ZP_07455806.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|309802475|ref|ZP_07696581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553973|gb|EFM41882.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|308220875|gb|EFO77181.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 480

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  I ITG+ GKT+T EM +  L++   T   +G    +IG  ++ A +    D    EL
Sbjct: 104 ARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG----NIGKAVSHAAVDPANDVLCVEL 159

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +    A IT IA  HL    GI+  A+ KA++F    K   +  N 
Sbjct: 160 SSFQL----HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAKVFHRASK--ALVYNA 213

Query: 228 DD-SFFELLKAKSHALGIKTI 247
           DD    EL +    A G + I
Sbjct: 214 DDIRVTELAERAETAEGCRRI 234


>gi|227327090|ref|ZP_03831114.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  +   +G + I ++G S +AD ++  + Q   Q    ++ 
Sbjct: 221 LPFYGQAVMCIDDAVIRELLPR---VG-RHITTYGFSDDADVRISGYHQTGAQGHFTLER 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + K  + V  +  G H A N    + + +    D D  ++AL  F   +G G+R+
Sbjct: 277 KDKPLLTVTLNAPGRHNALNAAAAVAVATDEGIDDDAILRALERF---QGTGRRF 328


>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
 gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
          Length = 499

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
          DSR +  Q  FF I G ++DGH ++ + + KGA  +VV  D+    G L + V
Sbjct: 29 DSRKVGEQGLFFCIVGANFDGHAYVKNVIDKGAVCLVVQKDVEPVPGVLIVKV 81


>gi|67906497|gb|AAY82604.1| predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured bacterium
           MedeBAC35C06]
          Length = 434

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 153/384 (39%), Gaps = 60/384 (15%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNH------IGVPLT 152
           + A L  +  +IA+TG+ GKTTT  ML  I + +       +G  + H      IG    
Sbjct: 93  IIADLTKEENLIAVTGTHGKTTTSYMLCHIFIENGIDIGYLVGGISPHFQDSAKIGTANI 152

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 + D  +F+         +F+ +   PH  +I  I   H   F  I++I      
Sbjct: 153 FIIEGDEYDSALFD------KRSKFINY--NPHSIIINNIEFDHADIFRDIDDIKRQFHH 204

Query: 213 IFEGLEKTGTIFLNYDDSFFE---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           + + +   G+I  ++DD   +    L + S  L I     F   +N +    K       
Sbjct: 205 LVKIIPNDGSIMYHHDDPNIKDVINLGSWSKMLPIGEEDLFYSYENREMTFNK------- 257

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +   L    ++ +H+   Y  A  M    G+       +  +I+ALS F    G  +R
Sbjct: 258 --INYSLTALPLKGIHNFKNYVAAIYMAYQYGVP------IKKSIQALSNF---SGVKRR 306

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE--LSQS 387
                ++   ++ID+ +  +P ++K  I  +   +P     +  ++G + E+G   ++  
Sbjct: 307 QELVYDKNNISIIDD-FAHHPTAIKLTIESIKHENP-----KKNIIG-IIELGSNTMASG 359

Query: 388 FHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            HIDL      ++ S+Y     W    H  ALKD L +       +    L   IQ+   
Sbjct: 360 KHIDLLINAANDLDSIY-----WYDPRH--ALKDKLFKKTFNSLDDLHKDLLAKIQT--- 409

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
           D  ++++ + NS   Y+ I   LE
Sbjct: 410 DSIILIMTNKNSSHIYQPIREYLE 433


>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 123/320 (38%), Gaps = 45/320 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H L+  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLVSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD+  E     + A    T+ ++G    +D   +     S  +   +   
Sbjct: 231 NREKYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTP 286

Query: 278 GKSMEVVHHGIGYHMAQNML 297
            +S+ V    IG     N+L
Sbjct: 287 YESVNVTMKLIGKFNVYNVL 306


>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
 gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 120/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V+   
Sbjct: 241 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVMMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|210608677|ref|ZP_03287954.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
 gi|210152934|gb|EEA83940.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 21/164 (12%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +  + IP++G  ++          A    K  ++AITG+ GKTTT  +L 
Sbjct: 79  VPTDLPVVLKMRDMGIPIWGEVEL----------AYTYGKGDVLAITGTNGKTTTTALLG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHI 186
             + + K++   +G    +IG P T A + +  D   + E+    L  I    H  RP +
Sbjct: 129 EIMKNYKESVFVVG----NIGNPYTAAALEMREDSVAVAEMSSFQLETI----HEFRPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           + I  I P HL+    +E    AK +I +   K  T  LNY+D 
Sbjct: 181 SAILNITPDHLNRHHTMEAYIKAKEDIAKNQTKEDTCVLNYEDE 224


>gi|324112499|gb|EGC06476.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia
           fergusonii B253]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 48/356 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALILLDDECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA++ L     H +G    +LG   +  + S   H    + + LY
Sbjct: 314 RWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLAHYLNGDNVRLY 368

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   G  + AL+  +        +ETM+     +   +  GD+V++  S +C
Sbjct: 369 CFGR---DGAQLAALRPEV-----AEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 492

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 153/380 (40%), Gaps = 55/380 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR  AP  AF  I G   D H+F      KG  ++V+  D+  S    ++P  
Sbjct: 23  VQDIIYDSRKAAPGLAFVCIVGTQRDSHEFAADCAAKGVSVLVIQHDIDLS----AMPGV 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V  V  +   +A+ +         + T+I +TG+ GKTTT  M+   L +  K    IG
Sbjct: 79  TVVKVESSRYAMALMSGNLFGNPSRQMTMIGVTGTKGKTTTTHMIKSVLEAAGKKVGMIG 138

Query: 142 SYNNH-IGVPLTLA-------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +   + +G     A             R  +D    +  + +S  G +      V   I 
Sbjct: 139 TNGIYFMGCHQETANTTPESYELQKTFRQFLDAGCDVALMEVSSQGLMMDRVAGVHYDIG 198

Query: 188 VITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V T ++P H+        EE  S K ++F    +     +N DD   E L  + H   + 
Sbjct: 199 VFTNLSPDHIGPGEHKTFEEYRSWKGQLF---RRCDVGVVNIDDENTEAL-LEGHTCKLV 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
           T   +G+S+ AD++    +      ++ V   + G+ +M+V  +  G     N L  L +
Sbjct: 255 T---YGRSEKADYRAEGCELLRTHDFLGVAFHVSGRDNMDVRVNMPGEFSVYNALAALAV 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGK---RYRCAL---NQGFFTLIDESYNANPASMKAA 356
             +L    D AI         EG GK   + R  L   ++ F  L+D  Y  N  S ++ 
Sbjct: 312 GKVLGLP-DAAI--------HEGLGKCVVKGRVELVPISKKFTILLD--YAHNEVSTESL 360

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           ++ L    PH   R + V G
Sbjct: 361 LTTLRAYHPH---RLVVVFG 377


>gi|283456398|ref|YP_003360962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           dentium Bd1]
 gi|283103032|gb|ADB10138.1| murD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium dentium Bd1]
          Length = 480

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  I ITG+ GKT+T EM +  L++   T   +G    +IG  ++ A +    D    EL
Sbjct: 104 ARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG----NIGKAVSHAAVDPANDVLCVEL 159

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +    A IT IA  HL    GI+  A+ KA++F    K   +  N 
Sbjct: 160 SSFQL----HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAKVFHRASK--ALVYNA 213

Query: 228 DD-SFFELLKAKSHALGIKTI 247
           DD    EL +    A G + I
Sbjct: 214 DDIRVTELAERAETAEGCRRI 234


>gi|241889121|ref|ZP_04776425.1| UDP-N-acetylmuramate--alanine ligase [Gemella haemolysans ATCC
           10379]
 gi|241864370|gb|EER68748.1| UDP-N-acetylmuramate--alanine ligase [Gemella haemolysans ATCC
           10379]
          Length = 434

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 113/291 (38%), Gaps = 41/291 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +L S+   IA+TG+ GKTTT  M++        T   IG    H G   +        +F
Sbjct: 96  KLLSEIPSIAVTGAHGKTTTTTMVSNIFKHNHITSYLIGDGTGH-GEKHS--------EF 146

Query: 163 GIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            I E          +  H +   P+ A++T I   H   F+   ++  A       ++  
Sbjct: 147 MIAEA-------CEYYRHFLAYHPNYAIVTNIDFDHPDYFNDEHDMFDAFQSFVNQVK-- 197

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ +  DD     LK  +     KTI  +G ++  D+Q++  +  SE S  +V    + 
Sbjct: 198 DTVVICGDDRLASQLKPTT----AKTI-KYGFNEGNDYQIKNVQTTSEHSKFDVYKNSEL 252

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +      + G H   N    + +  I    V+   ++L  + P E R   ++   N    
Sbjct: 253 LGTFTMAVFGLHDISNATSAIALADINGISVEKIKESLDQYKPAERRFSEHKIGNN---- 308

Query: 340 TLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCE 380
            +I + Y  +P+ +KA I           V++   PH   R    L +  E
Sbjct: 309 -VIVDDYAHHPSEIKATIDSACRKYEGKEVIAIFQPHTYTRTAKFLNEFAE 358


>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
 gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 120/317 (37%), Gaps = 39/317 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H L+  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLVSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALNLGRV--HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNML 297
           + V    IG     N+L
Sbjct: 290 VNVTMKLIGKFNVYNVL 306


>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
           neptunium ATCC 15444]
 gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 471

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 17/180 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV G D  L A    A+  R R K  ++A+TG+ GK+TT  ++   L    +     G+
Sbjct: 94  VPVIG-DMELFARAVQALPERARPK--VVAVTGTNGKSTTTALIGHILKQAGRDARVGGN 150

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +   L LA +  +  + + EL    L  ++ L H     ++V   ++P HL    G
Sbjct: 151 IGTGV---LDLAALHSNAIY-VLELSSYQLDLVKSL-HC---DVSVFMNLSPDHLDRHGG 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KAKSHALGIKTIYSFGKSKNA 256
           ++   +AK  IF+         + +DD + + +      K     + I + Y+ GK  +A
Sbjct: 203 MDGYQAAKMRIFQNQTDKNVAVIGFDDIYTQSIAIGLSAKGPQKVVQISSTYTLGKGISA 262


>gi|312871945|ref|ZP_07732027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092522|gb|EFQ50884.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 27/264 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGK 279
             N+D       EL   K+H      + +F +  N AD+ +       EQ ++E Q   +
Sbjct: 227 IANFDQKNILEQELSLTKAH------VVTFSEESNQADYYI------GEQ-YLESQADHE 273

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            M++    I G H  QN L+ + I  ++ A  +     LS F    G   R +  +    
Sbjct: 274 IMKISDIKIPGRHNQQNSLVAIAISKLMGASDEDIRSVLSTF---TGAKHRLQYVMTYNN 330

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
             + ++S + N  +   AI   SQ
Sbjct: 331 RRIYNDSKSTNIEAASVAIPSFSQ 354


>gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
 gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
          Length = 501

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 115/256 (44%), Gaps = 41/256 (16%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88
           +S DSR       FF  KG ++   +++  A+++G    V       S +G +      V
Sbjct: 40  LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91

Query: 89  DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135
            D+  A+  LA+A     ++K  +I  TG+ GKTT    TK +L       T  LS++  
Sbjct: 92  TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151

Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186
           T      + +H+  P  L L RM  +      E GM+HL        + T  V      +
Sbjct: 152 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207

Query: 187 AVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   I+P H+S       ++    K ++   +  + T+ LN++  +F+LL+  +    I
Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264

Query: 245 KTIYSFGKSKNADFQL 260
            TI ++G+ + +++Q+
Sbjct: 265 PTI-TYGRLEESNYQV 279


>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 27/257 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + K          +IG+P LTL + P  +   +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGWQVGTGGNIGLPALTLLQQPAQLY--V 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L        A I  +   H+  +  G+++  +AK  I+   E     
Sbjct: 157 LELSSFQLETASSL----HAAAATILNVTEDHMDRYPLGMQQYRAAKLRIY---ENATVC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    ++            SFG +   D+ L + +Q S  +W+ VQ +      
Sbjct: 210 VVNADDAMTMPVRGAD-----ARCVSFG-ADVGDYHLTR-QQGS--TWLRVQGEKVLNTD 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H +G H   N L  L +   +     T++KAL+ F+   G   R++          I+
Sbjct: 261 EMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFN---GLPHRFQRVHEHNGVRWIN 317

Query: 344 ESYNANPASMKAAISVL 360
           +S   N  S +AA++ L
Sbjct: 318 DSKATNVGSTEAALNGL 334


>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
 gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
          Length = 511

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 157/397 (39%), Gaps = 35/397 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +   HDLL  +   SI  +P     +  V GIS +S S  P + F  + G   DG +F  
Sbjct: 15  MMKLHDLLNNVP--SISSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFWQ 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVA--ARLRSKATIIAITG 115
            A++ GA   +++              V  VDD++    ++A A       +  +I +TG
Sbjct: 73  SAMEVGATAAMISPQAAEKFPPTDDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMIGVTG 132

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGS-YNNHIGVPLT--------------LAR-MPVD 159
           + GKTTT  ++   LS  +K  A IG+ Y    G   T              LA  +  +
Sbjct: 133 TNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEAVSAN 192

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + E+    L + R      +  ++V T +   HL     +E+  +AK  +F     
Sbjct: 193 NEYCVMEVSSHALAQGRVKQCPFK--VSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPDYL 250

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD + + L        + + YS G ++ ADF  R            +     
Sbjct: 251 QEKAIINLDDPYGKRLIESLKPEQVWS-YSVGDTQ-ADFYTRDLTYRGNGVTGTLHTPLG 308

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++      +G     N+L  +  V  L  D+ T I+ L  F    GR +R +    Q   
Sbjct: 309 TVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDIT 368

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++D  Y   P S++ +   L    P  +G+ I V G
Sbjct: 369 VIVD--YAHTPDSLENS---LKAARPFIQGQLICVFG 400


>gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Treponema succinifaciens DSM 2489]
 gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Treponema succinifaciens DSM 2489]
          Length = 568

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
          V G++ DSR +     FFA+ G H  G+ FI  AV  GAG VV   ++ 
Sbjct: 37 VEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVVFQDEIT 85


>gi|320540404|ref|ZP_08040054.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
 gi|320029335|gb|EFW11364.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M++   A + +  T+                      ++ G+ +  
Sbjct: 122 IAVAGTHGKTTTTAMVSSIYAEADLDPTF----------------------INGGLVKAA 159

Query: 169 MSH--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
            +H  LG  RFL            HL +P +A+IT I   H+  + G  E +        
Sbjct: 160 GTHARLGSSRFLIAEADESDASFLHL-QPMVAIITNIEADHMDTYQGDFENLKQTFINFL 218

Query: 215 EGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
             L   G   +  DD    ELL         + I ++G S +AD ++  + Q   Q    
Sbjct: 219 HNLPFYGRAVMCIDDPVVRELLPCVG-----RHITTYGFSNDADVRIENYHQLGAQGCFT 273

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  Q K +  V  +  G H A N      + +    D D  ++AL+ F   +G G+R+
Sbjct: 274 LSRQDKPLITVTLNAPGRHNALNAAAAAAVATEEGIDDDDILRALASF---QGTGRRF 328


>gi|309804760|ref|ZP_07698824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165870|gb|EFO68089.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 25/263 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             N+D       EL   K+H +         +S  AD+ +       EQ ++E Q   + 
Sbjct: 227 IANFDQKNILEQELSLNKAHVVTFSE-----ESTQADYYI------GEQ-YLESQADHEI 274

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           M++    I G H  QN L+ + I  I+ A  +     LS F    G   R +  +     
Sbjct: 275 MKISDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMTYNNR 331

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
            + ++S + N  +   AI   SQ
Sbjct: 332 RIYNDSKSTNIEAASVAIPSFSQ 354


>gi|271502044|ref|YP_003335070.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
 gi|270345599|gb|ACZ78364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
          Length = 437

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 146/355 (41%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  +            +IGVP  L  +  +    + 
Sbjct: 102 AQAPIVAITGSNGKST----VTTLVGQMAHAAGWAVGVGGNIGVP-ALELLKQESQLYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L      TH +    A I  +   H + +  G+++  +AK  I+E  +      
Sbjct: 157 ELSSFQLET----THSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAK---VCI 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG     D+ L + +    ++W+ V+    L  + 
Sbjct: 210 VNADDALTMPVRGAD-----ARCLSFGVDV-GDYHLNRQQG---ETWLRVKGERVLNTRE 260

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++V    G H   N L  L +   +     +A+ AL+ F    G   R++ +L +    
Sbjct: 261 IKLV----GQHNYTNALAALALADAVGIPRSSALTALTTF---TGLPHRFQLSLERNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA+S L Q+    +G    +LG   +  + S        + + LY 
Sbjct: 314 WVNDSKATNVGSTEAALSGL-QV----DGTLHLLLGGDGKSADFSPLLRYLQGDRIRLYC 368

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        ++TM+     I S    GD+V++  S +C
Sbjct: 369 FGR---DGGQLAALRPEI-----AQQTDTMEQAMRLIASRTQPGDMVLL--SPAC 413


>gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 495

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 159/393 (40%), Gaps = 51/393 (12%)

Query: 18  SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           ++G+ P G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +
Sbjct: 10  ALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTD 69

Query: 72  TDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARL---RSKATIIAITGSVGKTT----T 122
               A          G   VL       LA AA L   R  AT++A+TG+ GKT+    T
Sbjct: 70  AAGAALAREALA-GSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFT 128

Query: 123 KEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---S 170
           +++        + I  + ++  +A   ++      P+TL R+  +  + G+    M   S
Sbjct: 129 RQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLSEAAEAGVTHAAMEASS 186

Query: 171 HLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
           H  E R L   HL     A  T     HL      E   +AKA +F   L   GT  +N 
Sbjct: 187 HGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNL 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVH 285
           DD     + A + A   + I   G   +AD  LR   Q  + +  +++   QG+      
Sbjct: 244 DDPRGPEIAALARARAQRVI---GTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARL 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFTLID 343
             IG   A N+ +     S+     D   +  + F   +G RG+    A  + G    +D
Sbjct: 301 PLIGGFQAWNVAVA---ASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVD 357

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P ++  A+  L    PH  GR + V G
Sbjct: 358 --YAHTPDALATALKAL---RPHVMGRIVVVFG 385


>gi|329124133|ref|ZP_08252680.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
 gi|327467558|gb|EGF13056.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 58/237 (24%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++VAS     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  M+++  +  K                      P  V+ G+ +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLD--------------------PTFVNGGLVK 156

Query: 167 LG--MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAE 212
                +HLG  R+L            HL +P ++V+T + P H+  + G  E++ +   +
Sbjct: 157 SAGKNAHLGASRYLIAEADESDASFLHL-QPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
               L   G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELIPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arsenophonus nasoniae]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           +++DSR +A  + F A+KG   DG  +I  A+ +G   ++         G++     +PV
Sbjct: 5   MTLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGVPV 64

Query: 86  FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++D+   L+ LA       AA+LR    +I +TG+ GKTTT +++      + +  A 
Sbjct: 65  IYINDLNNQLSLLAGEFYQHPAAKLR----LIGVTGTNGKTTTTQLIAQWAKGLGEVSAV 120

Query: 140 IGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +G+  N I   + L+              ++ +D    +  + +S  G ++     +   
Sbjct: 121 MGTVGNGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            AV T ++  HL     ++  A+AK  +F    K+    +N DD
Sbjct: 181 AAVFTNLSRDHLDYHGDMQNYAAAKWLLFS-THKSDKQIINVDD 223


>gi|253689952|ref|YP_003019142.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259509777|sp|C6DEU2|MURC_PECCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251756530|gb|ACT14606.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  +   +G + I ++G S +AD ++  ++Q   Q    ++ 
Sbjct: 221 LPFYGQAVMCIDDAVIRELLPR---VG-RHITTYGFSDDADVRVSGYRQVGAQGHFTLER 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + K  + V  +  G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 277 KDKPLLTVTLNAPGRHNALNAAAAVAVATDEGIDDEAILRALERF---QGTGRRF 328


>gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 156/379 (41%), Gaps = 50/379 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIP 84
           V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+      A   + + +I 
Sbjct: 18  VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFEPPAPAELPVPADAIA 77

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V G+   LG++         R+   ++ +TG+ GKT+T ++L  AL+ +  +   +G+  
Sbjct: 78  VPGLRARLGSMADQFHGHPSRAL-RMVGVTGTNGKTSTVQLLAQALTLLGTSTGTLGT-- 134

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR----------FLTH--------LVRPHI 186
             +GV L  A +P      +     + L ++R            +H         V   +
Sbjct: 135 --LGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQGRVDAVHFDV 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKAKSH 240
           AV T +   HL     + +  +AKA++F   GL+      +N DD+F    F  L     
Sbjct: 193 AVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQAA---VVNLDDAFGRTLFASLDPALR 249

Query: 241 ALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG-IGYHMAQNML 297
           A+G+ +    G +  AD  QL       + + +   L+   ++  VH   +G     N+L
Sbjct: 250 AIGVSSRGQGGATVRADALQL-------DHNGISFALRIDSTVHAVHSPLLGRFNVDNLL 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G +  L        + L    P  GR  R   A       L+   Y   P +++ A 
Sbjct: 303 AVAGALHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQA- 358

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L+ +  H + R I V G
Sbjct: 359 --LASLRSHAQDRLICVFG 375


>gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
           8437]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 106 SKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           ++A++I ITGS GKTTT  ++   +A   I    A       +IG+ L+     +D +  
Sbjct: 42  TEASMIGITGSNGKTTTTSLVGRMLARGGIPARVA------GNIGMALSEVAPGMDQE-- 93

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  +S L   +   T   RP I  +  + PAHL     +E+   +K ++F   +    
Sbjct: 94  --EWLISELSSFQLKGTRQFRPRIGALLNLVPAHLDYHGSMEDYLESKGKLFANQQPGDI 151

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             LN D      L  +        ++ F + +  D  L       +Q W+  +L
Sbjct: 152 AVLNRDSDVCRRLAPQLRG----DVWWFSRQEPVDRGL-----MVKQGWVTARL 196


>gi|327441157|dbj|BAK17522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Solibacillus
           silvestris StLB046]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A  I ITGS GKTTT  +L   L         +G     I   +      V  +
Sbjct: 106 AYLVSEAPFIGITGSNGKTTTTTLLFEMLK--------VGRLKPLIAGNIGTVACGVAAE 157

Query: 162 FGIFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
               E+ ++ L   + + T   RPHIA++T +  AHL      EE A AK
Sbjct: 158 AKADEVIVTELSSFQLMGTREFRPHIAILTNLYEAHLDYHGTFEEYAEAK 207


>gi|220906333|ref|YP_002481644.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7425]
 gi|254765995|sp|B8HWY0|MURC_CYAP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219862944|gb|ACL43283.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7425]
          Length = 482

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 158/398 (39%), Gaps = 67/398 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTY 137
            L  P+    D+L AL +     R +S    IA+ G+ GKTTT  M+   L    +  T 
Sbjct: 93  ELGCPILHRSDLLAALIE-----RYQS----IAVAGTHGKTTTSSMIGYLLLQGGVDPTI 143

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G      G   T          G+ E  ++   E         P I VIT I   H 
Sbjct: 144 IIGGEVQAWEGNART----------GMGEYLVAEADESDGSLAKFAPQIGVITNIELDHP 193

Query: 198 SNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSK 254
            ++S +E++     +IFE       T+   +D      ++ +   L  +++  YS  +  
Sbjct: 194 DHYSNLEQV----IKIFETFANHCQTVVACWD---CPTIRDRLTVLPDQSVVSYSLFRES 246

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD+ + +     + +  +V  +G+ + E+    +G H  +N L  + +  +L  D  T 
Sbjct: 247 GADYSVDQISYGPQGTLAQVWERGELLGELSTKLLGAHNLKNALAAVAVGRLLGLDFITI 306

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------------- 358
            + ++ F   EG  +R+           +D+ Y  +P+ ++A ++               
Sbjct: 307 SRGIARF---EGARRRFEVRGEAHGIRFVDD-YAHHPSEIRATLAAGRLQLKSREEFISP 362

Query: 359 ---VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISH--VWLSGFHVL 412
              +++   PH   R    L       E SQ+F   DL  +  +Y+       + G H  
Sbjct: 363 WQRLVAVFQPHRYTRTFTFL------TEFSQAFGDADLVVLTDIYSAGERDRLVQGQH-- 414

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L D +      V Y  +++ + LF++ +L  GD+V+V
Sbjct: 415 -LADCMAEYHAQVQYQPSLEEVKLFLKQTLRPGDLVLV 451


>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 36/186 (19%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           IK P    H  I+ A+Q+                  SIP+         ++++  A+R  
Sbjct: 67  IKSPGIPNHIAIIQALQEA-----------------SIPI---------IDEVEFASRY- 99

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA++IAITGS GK+TT  +   A   +K     +G   N IG       +  + ++ + 
Sbjct: 100 TKASLIAITGSNGKSTTTHL---AYHLLKAGGLNVGIAGN-IGTSFARKVLLEEHNYYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
           EL    L  ++      +  IA I  I P HL  +   +    +AK  I   + K G   
Sbjct: 156 ELSSFQLEHLQTF----KADIACILNITPDHLDRYDNQLNNYIAAKFRILRNMIKEGYFI 211

Query: 225 LNYDDS 230
            N DD+
Sbjct: 212 YNQDDT 217


>gi|167945041|ref|ZP_02532115.1| UDP-N-acetylmuramate--L-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 286

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 26/266 (9%)

Query: 182 VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P ++V+T I   H++ + G  E + +A  E    L   G   L  DD     L  K  
Sbjct: 23  LQPMLSVVTNIDADHMATYGGDFERLRAAFLEFLHHLPFYGLAVLCIDDPEVRRLLPKV- 81

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMAQNMLM 298
               + I S+G S++AD +    +Q    +   ++ +G  +  ++  +  G H   N L 
Sbjct: 82  ---TRRIRSYGFSEDADVRAVDVEQQGLTTRFRLECEGWERGQQISLNMPGRHNVLNALA 138

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPAS 352
            + +   L  +     +AL  F   +G G+R+      RCA  Q    L+ + Y  +P  
Sbjct: 139 AVAVALELGVEPAAIQRALQSF---QGIGRRFQTKGECRCAAGQ---VLLVDDYGHHPRE 192

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           + A +  + +  P   GRRI +           + F  D  +VLS  ++   + V+ +G 
Sbjct: 193 IAATLQAVHEGWP---GRRIVLAFQPHRFSRTQEQFD-DFVQVLSQADVLLLTEVYAAGE 248

Query: 410 HVLALKDALPRSIHVHYSETMDGLFL 435
             +   D    S  V     +D +F+
Sbjct: 249 APIQGADGRALSRAVRARGQVDPVFV 274


>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 147/383 (38%), Gaps = 66/383 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83
           +  +  DSR ++  + F A +G   DGH++I +AV +GA  +V      D V  +  +  
Sbjct: 24  ITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQGAIAIVCEELPKDTVNGVTYVK- 82

Query: 84  PVFGVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML----TIA----- 129
                  V  A   LA  A            ++ +TG+ GKTT   +L    T A     
Sbjct: 83  -------VQNAQQALAFMASNFYENPSENLQLVGVTGTNGKTTIASLLYQLYTKAGFKVG 135

Query: 130 -LSSIKKTYACIGSYNNH-----IGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLV 182
            LS++K     I     H     + +   L++M  +  ++   E+    + + R  T  +
Sbjct: 136 LLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTDIGCEYCFMEVSSHGIAQHR--TTGL 193

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
           +    + T ++  HL   S   E    K + F+ L  +     N DD       +  KAK
Sbjct: 194 KFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDELPSSAFALTNADDKNGMVMLQNTKAK 253

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMA 293
                +K+I        AD++ +          +E Q  G  +++ ++      IG   A
Sbjct: 254 KQTYALKSI--------ADYKAQ---------ILENQFSGLLLKLNNNELWSKLIGNFNA 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L       +L      +++ +S      G   R++  +      ++D  Y   P ++
Sbjct: 297 YNLLAIFATTELLGMQTMESLRLISELESVNG---RFQYLIKNKITAIVD--YAHTPDAL 351

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           K  +  ++ I    E   I V+G
Sbjct: 352 KNVLETINAIRTKNE-ELITVVG 373


>gi|331083260|ref|ZP_08332373.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404341|gb|EGG83886.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 146/357 (40%), Gaps = 45/357 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  L   +         +  I V   L  +  ++  G  E  ++
Sbjct: 114 IAVAGTHGKTTTTSMISHVLLEAEA--------DPTISVGGILPAIHGNIRVGNSETFIT 165

Query: 171 HLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E    FL+    P I++I  I   HL  F  +++I  +     E L   GT+ +N D
Sbjct: 166 EACEYTNSFLSFF--PKISIILNIDADHLDFFKDLDDIRHSFRLFAEKLPADGTLIINGD 223

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWMEVQLQGK-SME 282
               E +  K   L  + I ++G  K AD+        +    S     + Q  G+ S+ 
Sbjct: 224 IPNVEEITDK---LPCEVI-TYGLEKAADYTAANITFDETAHASFDCLHKGQCIGRFSLA 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L  + +   +  D+DT  + +  F    G  +R++        T+I
Sbjct: 280 VP----GLHNVSNALSAIALGEKVGFDLDTVRRGILHFG---GTDRRFQYKGKVAGVTII 332

Query: 343 DESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           D+ Y  +P  + A +   +            PH   R  A++ +  ++  L+ +  + LA
Sbjct: 333 DD-YAHHPTEIAATLKTAANYPHKTTWCVFQPHTYTRTKALMDEFADV--LATAERVILA 389

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ +     ++ +S      L D +  R    +Y  T D +  F+  + ++GDV++ 
Sbjct: 390 DIYAARETDNLGVSSSD---LCDKINERGGKAYYFPTFDEIEAFLLENCINGDVLIT 443


>gi|238918676|ref|YP_002932190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Edwardsiella
           ictaluri 93-146]
 gi|238868244|gb|ACR67955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 41/264 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVD 161
           ++  I+AITGS GK+T        ++++    AC   +      +IGVP  L+ +  +  
Sbjct: 103 AQVPIVAITGSNGKST--------VTTLVGEMACAAGWQVGVGGNIGVP-ALSLLKHECR 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  ++  H++ +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQLET----TASLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYENAR-- 207

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----L 276
               +N DD+    L    H    + + SFG     D+ L + +    + W+ V+    L
Sbjct: 208 -ACVVNADDA----LTMPIHGADTRCV-SFGVDV-GDYHLNRQQG---EIWLRVRGEKIL 257

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K M++     G H   N L  L +   +     ++++AL+ F    G   R++  L  
Sbjct: 258 NTKEMQLT----GIHNYTNALAALALADAVGLPRASSLRALTTFR---GLAHRFQLVLEH 310

Query: 337 GFFTLIDESYNANPASMKAAISVL 360
                I++S   N  S +AA+  L
Sbjct: 311 SGVRWINDSKATNVGSTEAALKGL 334


>gi|183983182|ref|YP_001851473.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
 gi|229620048|sp|B2HGR5|MURC_MYCMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183176508|gb|ACC41618.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
          Length = 488

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 16/201 (7%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AV+T I   HL  +   E          E L   G + +  DD     L  +S  LG
Sbjct: 183 PHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPGGALVVCADDPGSAALAERSAELG 242

Query: 244 IKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMAQN 295
           I+ +  +G            L  W+Q    +  ++QL G    +SM +     G HMA N
Sbjct: 243 IR-VLRYGSAGHAEAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVP--GRHMALN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L     + A V   +  L+ F   EG  +R+          + D+ Y  +P  ++A
Sbjct: 300 ALGALLAAIEVGAPVGEVLDGLAGF---EGVRRRFELVGTAESVRVFDD-YAHHPTEVRA 355

Query: 356 AI-SVLSQISPHGEGRRIAVL 375
            + +V S +   G GR + V 
Sbjct: 356 TLEAVRSVVRQSGSGRLLVVF 376


>gi|88704101|ref|ZP_01101816.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
 gi|88701928|gb|EAQ99032.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 151/376 (40%), Gaps = 44/376 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A + +  T+  IG   N  G    L         G F + 
Sbjct: 107 IAVAGTHGKTTTTSLIAAVFAAAGLDPTF-VIGGRVNSTGTHAQLG-------AGRFLIA 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P + V+T I   H+  + G   E+     E    L   G   L  
Sbjct: 159 EADESDASFL-HL-QPMVTVVTNIEADHMETYGGDFAELRRTFVEFLHNLPFYGLAVLCV 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVH 285
           DD     L A    LG + I  +G S++AD+++   +     +   V+       + +  
Sbjct: 217 DDPVLAGLDAD---LG-RPILGYGFSEHADYRISDLEPDGLSTRFVVRRPDAHPPLAISL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTL 341
           +  G H   N    + + +    D      AL+ F    G G+R+    +  +     TL
Sbjct: 273 NMPGPHNVLNATAAVAVATDQGIDDAVIQNALANFG---GVGRRFSVFDKVRIGAHEVTL 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  + A ++   Q  P    RR+ ++         ++  + D   VLS  + 
Sbjct: 330 VDD-YGHHPTEVAATLASARQAWPE---RRVVMVYQPHRFTR-TRDLYDDFVSVLSETDF 384

Query: 401 --ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF----LFIQSSLVD----GDVVVVK 450
             +  V+ +G  V+   D+   +  +     +D L+    L + + LVD    GD+VV +
Sbjct: 385 LVLLEVYPAGEEVITGADSRSLARSIRQRGQLDPLYAASALEVPALLVDVLEPGDIVVTQ 444

Query: 451 SSNSCGFYRLINLLLE 466
            +      RL N L +
Sbjct: 445 GAGDIA--RLANKLRD 458


>gi|331650988|ref|ZP_08352016.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
 gi|331051442|gb|EGI23491.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    + +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGINDEAILRALESF---QGTGRRF 328


>gi|229075669|ref|ZP_04208651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
 gi|229098383|ref|ZP_04229328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|229104475|ref|ZP_04235142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228678917|gb|EEL33127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228685000|gb|EEL38933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|228707445|gb|EEL59636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 113/260 (43%), Gaps = 25/260 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGRKHPIIAG---NIGTVACEVAQDAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IAV   +  AHL      +E   AKA IF+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K +N D        C + + +    +G+ +  V
Sbjct: 222 INADDA--DVMALSAYSKGQKILFSTAK-ENED------GACIKDNAL--YFKGEKVVEV 270

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINNRKFY--- 327

Query: 343 DESYNANPASMKAAISVLSQ 362
           ++S   N  + + A+S  +Q
Sbjct: 328 NDSKATNMLATEKALSAFTQ 347


>gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena
           XCL-2]
 gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 19/133 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--------AGLVVVNTDMVASI 78
           V+ ++IDSR +    AF A++G    G      A+++G        AGLV  N      +
Sbjct: 27  VSALTIDSRQVERGTAFIALQGGQSHGMAHAEQAIKQGASCILTDRAGLVEFNHSHQQPL 86

Query: 79  GSLSIPVFGVDDVLGALN-KLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSS 132
              + PV  V    G+LN +LA  A+        +  +I +TG+ GKT++   +   L++
Sbjct: 87  NK-TCPVIEV----GSLNQQLATFAKWFYDAPSERVNVIGVTGTNGKTSSSHYIAQMLTA 141

Query: 133 IKKTYACIGSYNN 145
           + +  A +G+  N
Sbjct: 142 LNQKVALLGTLGN 154


>gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 491

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 150/381 (39%), Gaps = 54/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+       +   L +P  
Sbjct: 18  VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEP---PAPDGLPVPAD 74

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 75  AI-AVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 134 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSSHALDQGRVDAVH 189

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237
             +AV T +   HL     + +  +AKA++F   GL+      +N DD+F    F  L  
Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAA---VVNLDDAFGHTLFAALDP 246

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQN 295
              A+G+ +        +AD  +       + + +   + ++G+   V    +G     N
Sbjct: 247 ALRAIGVSS------RAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDN 300

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L   G +  +          L    P  GR  R   A       L+   Y   P +++ 
Sbjct: 301 LLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQ 357

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A+S L     H + R I V G
Sbjct: 358 ALSSLRS---HAQDRLICVFG 375


>gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 481

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 9/97 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + IS DSR++     FF +KG ++   +F+  AV+ G    +  +D       + IPV  
Sbjct: 36  DKISYDSRNVTNTTLFF-VKGENFK-KEFLEGAVESGLKFYISESDF-----EVGIPVLV 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           V+D+  A++ +A+      + K  I+A TG+ GKTT+
Sbjct: 89  VNDIKQAMSLIAMEFYGNPQDKLKILAFTGTKGKTTS 125


>gi|160947656|ref|ZP_02094823.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
 gi|158446790|gb|EDP23785.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 157/411 (38%), Gaps = 59/411 (14%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+ +P       LGAL        +R+    IAI+GS GK+TT  M++  L +       
Sbjct: 92  SIGVPCVTRGQFLGAL--------MRNYTHSIAISGSHGKSTTTSMISKILIN------- 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
              ++  I +   L  +  +V  G  +  ++   E +       P +A+I  I   HL  
Sbjct: 137 -SPFDPSILIGGNLDEIDGNVLCGNEDYLVTEACEFKANILHYYPSMAIILNIDEDHLDF 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIK--------TI 247
           +  ++ I        + L++     +N DD       E +K ++   GI         T 
Sbjct: 196 YKNLDHIVDTFIGYMKNLDENSKAIINIDDPNCLPLLEHIKGETITFGINNENATYNITN 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SF K  +  F +   K       + +             IG H   N    +       
Sbjct: 256 ISFDKVGHPCFDIENEKFGKHHFCLNI-------------IGRHNIYNAAAAIIATYETG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            DV+    A+S +     R + Y    N    T++ + Y  +P  +K   S LS I+ H 
Sbjct: 303 IDVEYIKNAISKYKNLHRRMEVYGVIGNGKKATILTD-YGHHPREIK---SCLSSIAEHK 358

Query: 368 EGRRIAVLGDMCE------MGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDALP 419
           EGR + +            + + ++ F  D  EV+   +Y     +    H + L + L 
Sbjct: 359 EGRLVCIFQPHTYSRTKALLNDFAKCFD-DCDEVIVTEIYAAREKFDPTIHSIDLVEKLN 417

Query: 420 RS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-YRLINLLLEEF 468
           ++ ++  Y +T +    +I  +  D D ++   +  CG  + L  +++E++
Sbjct: 418 KNGVNAIYLKTFEEARDYIFETFKDKDTII---TTGCGNPHELAKMIVEDY 465


>gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17570]
 gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|260589032|ref|ZP_05854945.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
 gi|260540811|gb|EEX21380.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 146/357 (40%), Gaps = 45/357 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  L   +         +  I V   L  +  ++  G  E  ++
Sbjct: 129 IAVAGTHGKTTTTSMISHVLLEAEA--------DPTISVGGILPAIHGNIRVGNSETFIT 180

Query: 171 HLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              E    FL+    P I++I  I   HL  F  +++I  +     E L   GT+ +N D
Sbjct: 181 EACEYTNSFLSFF--PKISIILNIDADHLDFFKDLDDIRHSFRLFAEKLPADGTLIINGD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWMEVQLQGK-SME 282
               E +  K   L  + I ++G  K AD+        +    S     + Q  G+ S+ 
Sbjct: 239 IPNVEEITDK---LPCEVI-TYGLEKAADYTAANITFDETAHASFDCLHKGQCIGRFSLA 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L  + +   +  D+DT  + +  F    G  +R++        T+I
Sbjct: 295 VP----GLHNVSNALSAIALGEKVGFDLDTVRRGILHFG---GTDRRFQYKGKVAGVTII 347

Query: 343 DESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           D+ Y  +P  + A +   +            PH   R  A++ +  ++  L+ +  + LA
Sbjct: 348 DD-YAHHPTEIAATLKTAANYPHKTTWCVFQPHTYTRTKALMDEFADV--LATAERVILA 404

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ +     ++ +S      L D +  R    +Y  T D +  F+  + ++GDV++ 
Sbjct: 405 DIYAARETDNLGVSSSD---LCDKINERGGKAYYFPTFDEIEAFLLENCINGDVLIT 458


>gi|311068041|ref|YP_003972964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
 gi|310868558|gb|ADP32033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+    IG   +      D D    
Sbjct: 111 TDAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGN----IGTVASEVAYHADGD---- 162

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E  ++ L   + + TH  RPHI++I  +  AHL      E    AK  ++    ++ T  
Sbjct: 163 EWIVTELSSFQLMGTHAFRPHISLILNVFDAHLDYHHSRENYEKAKQNVYLHQLESDTAV 222

Query: 225 LNYDDS 230
           +N DD 
Sbjct: 223 VNQDDE 228


>gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 160/396 (40%), Gaps = 57/396 (14%)

Query: 18  SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           ++G+ P G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +
Sbjct: 10  ALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTD 69

Query: 72  TDMVASIG-----SLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTT-- 121
               A        S +  V   D        LA AA L   R  AT++A+TG+ GKT+  
Sbjct: 70  AAGAALAREALAGSGAALVVAED----PRQTLAGAAALWFGRQPATVVAVTGTNGKTSVA 125

Query: 122 --TKEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM- 169
             T+++        + I  + ++  +A   ++      P+TL R+  +  + G+    M 
Sbjct: 126 TFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLAEAAEAGVTHAAME 183

Query: 170 --SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIF 224
             SH  E R L   HL     A  T     HL      E   +AKA +F   L   GT  
Sbjct: 184 ASSHGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSME 282
           +N DD     + A + A   + I   G   +AD  LR   Q  + +  +++   QG+   
Sbjct: 241 VNLDDPRGPEIAALARARAQRVI---GTGFHADADLRLLSQRFDATGQDLRFSWQGEVHL 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFT 340
                IG   A N+ +     S+     D   +  + F   +G RG+    A  + G   
Sbjct: 298 ARLPLIGGFQAWNVAVA---ASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASV 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +D  Y   P ++  A+  L    PH  GR + V G
Sbjct: 355 FVD--YAHTPDALATALKAL---RPHVMGRIVVVFG 385


>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
 gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 241 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|161486821|ref|NP_722058.2| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mutans UA159]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 123/298 (41%), Gaps = 40/298 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T + + G+ GKT+T  +L   L +I  T   IG      G    LA    +  + +FE  
Sbjct: 104 TSLGVAGAHGKTSTTGLLAHVLKNITDTSYLIGD-----GTGRGLA----NSQYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P  ++IT I   H   F+G++++ +A  +  + ++K   +F+  +
Sbjct: 153 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGVDDVFAAFNDYAKQVKK--GLFVYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           D +   L + +       IY +G   N DF      + +  S  +V+     +   H   
Sbjct: 208 DPYLRKLTSSA------PIYYYGFKDNDDFVAYDIMRSTNGSDFKVRHGQNELGSFHVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    +  + I   ++D   + L  F    G  +R+   L     T+ID+ + 
Sbjct: 262 FGRHNVLNATAVIANLYIAGVEMDLVRQHLKTF---SGVKRRFSEKLIND-VTIIDD-FA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            +P  + A +    Q            PH   R IA+L +  +   L+++  + LA++
Sbjct: 317 HHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQA--LNEADSVYLAQI 372


>gi|89055250|ref|YP_510701.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
 gi|109892708|sp|Q28NN6|MURC_JANSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|88864799|gb|ABD55676.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 107/279 (38%), Gaps = 30/279 (10%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE +     +    +   G      D    + L  K   +  +
Sbjct: 182 IAIVTNIDPEHMEHWGTIENLRQGFLDFVSNIPFYGLAVCCTDHPEVQTLVGK---ITDR 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTL 300
            + +FG +  AD +       +  +  ++ LQ  S +++  G      G H   N L  +
Sbjct: 239 RVVTFGFNAQADVRAVNLHYRAGVACFDIALQ--SEDILIEGCTLPMPGDHNVSNALAAV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    D   +AL  F   +G  +R+      G  T+ID+ Y  +P  + A +   
Sbjct: 297 AVARHLGMKADEIREALDGF---KGVNRRFTKVGEVGGITVIDD-YGHHPVEIAAVLKAA 352

Query: 361 SQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            Q S         PH   R  ++  D C  G  S++  + +AEV   Y      + G   
Sbjct: 353 RQASDGRVIAVHQPHRYSRLHSLFDDFC--GCFSEADVVAIAEV---YAAGEDPIEGASR 407

Query: 412 LALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVV 448
             L   + R  H H    +  D L   ++     GD+VV
Sbjct: 408 DDLVAGMIRHGHRHARAILDEDDLERLVREQARPGDMVV 446


>gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae OXC141]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|328542964|ref|YP_004303073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412710|gb|ADZ69773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R+   A +IAITG+ GK+TT    T  ++ + KT         +IG P+        +D 
Sbjct: 109 RICPDAPLIAITGTNGKSTT----TALIAHLLKTLGLDVQMGGNIGTPV--------LDL 156

Query: 163 GIFELGMSHLGEIRF----LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + G  ++ E       L   + P + ++  ++P HL     +E  A+ K  +  G  
Sbjct: 157 APLQPGRHYVVECSSYQIDLAPSIEPTVGILMNLSPDHLDRHGTMENYAAIKERLVAG-- 214

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            + T  +  DD F E +  +    G++     G    AD
Sbjct: 215 -SRTAVVGVDDRFSEAIADRIARAGVRVRRISGHLPQAD 252


>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 154/381 (40%), Gaps = 54/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSRS+ P   FF + G   DGHDF   A   GA  +VV   +      ++IP  
Sbjct: 23  ITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNGAAALVVERKL-----DVAIPQL 77

Query: 87  GVDDVLGALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            V D     ++LA+A            K  +I +TG+ GKTTT  ++   LS   ++   
Sbjct: 78  IVKD-----SRLAMAIISDRYYDHPSQKLRLIGVTGTNGKTTTTYLIERILSDAGQSAGV 132

Query: 140 IGSYNNHIG---VPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+         +P++            LA M    VD    E+    L + R  T   R
Sbjct: 133 IGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCAMEVSSHALDQGR--TWGCR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--------IFLNYDDSFFELL 235
             I V T +   HL     +E+ A+AK+ +F  L  T +          LN DDS  +L 
Sbjct: 191 FRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEAERSYAVLNADDSASDLF 250

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              ++A  ++ I ++G  + AD +    +  S  +   ++      ++    +G     N
Sbjct: 251 ---ANAAAVE-ILTYGIDREADVRASDIRITSRGTTFRLETFRGGADISIRMVGKFNVYN 306

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +  +    ++   ++L       GR +       Q +  ++D  Y   P  ++ 
Sbjct: 307 ALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAG--QPYAVIVD--YAHTPDGLE- 361

Query: 356 AISVLSQISPHGEGRRIAVLG 376
             +VL  +    EGR I V G
Sbjct: 362 --NVLRTVKEFVEGRIICVFG 380


>gi|317154475|ref|YP_004122523.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944726|gb|ADU63777.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 158/403 (39%), Gaps = 57/403 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIA 129
           N ++VA+ G   IP+    ++L  L       RLR   T +AI G+ GKTTT  +L TI 
Sbjct: 96  NPELVAARGR-GIPIIPRAEMLAEL------MRLR---TGVAIAGTHGKTTTTSLLATIF 145

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
             +       IG   N  G    L         G + +  +   +  FL  L+ P I+V+
Sbjct: 146 TEAGLDPTVIIGGKLNTYGANARLGG-------GDYLIAEADESDGSFL--LLSPIISVV 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTI 247
           T +   H+  ++  + I  A       +   G   +  DD   + L    K   L     
Sbjct: 197 TNVDKDHMDFYADQDAIDDAFTRFMNSIPFYGMNVVCGDDEGVQRLLPTIKRPCL----T 252

Query: 248 YSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           Y  G  KN   +LR     S  +S   V L G+   EV     G H  QN L  +G+   
Sbjct: 253 YGLG-PKN---RLRGEIITSHLRSLFRVFLDGQPWGEVTVAQPGIHNVQNALACIGVALE 308

Query: 306 LTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAI------- 357
              D +  +  L+ F    G G+R+ R    +G   L+ + Y  +PA + A +       
Sbjct: 309 AGLDKEDIVNGLANFG---GVGRRFERKGERKG--VLVVDDYGHHPAEIIANLRTARACY 363

Query: 358 ---SVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLA 413
               ++    PH   R  A+ G+ C      ++F   DL  +  +Y  S   + G   L+
Sbjct: 364 PDRRLVVAFQPHRFTRTQALFGEFC------KAFTDADLLLLTEIYPASESPIPGVSGLS 417

Query: 414 LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L   + +     V +    + L   +  +L  GD+ + + + S
Sbjct: 418 LAQGIKQVSDTKVQFFPDFESLEARLADTLRPGDLFMTQGAGS 460


>gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 9/97 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + IS DSR++     FF +KG ++   +F+  AV+ G    +  +D       + IPV  
Sbjct: 36  DKISYDSRNVTNTTLFF-VKGENFK-KEFLEGAVESGLKFYISESDF-----EVGIPVLV 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           V+D+  A++ +A+      + K  I+A TG+ GKTT+
Sbjct: 89  VNDIKQAMSLIAMEFYGNPQDKLKILAFTGTKGKTTS 125


>gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|56419653|ref|YP_146971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           kaustophilus HTA426]
 gi|62900465|sp|Q5L0X7|MURD_GEOKA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56379495|dbj|BAD75403.1| UDP-N-acetylmuramoylalanine D-glutamate ligase (D-glutamic acid
           adding enzyme) [Geobacillus kaustophilus HTA426]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+ + I ITGS GKTTT  ++   L +  +     G    +IG V   +AR      + +
Sbjct: 110 SEGSFIGITGSNGKTTTTTLIYEMLKADGQDPLLAG----NIGLVACEVAREAKPGQWLV 165

Query: 165 FELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            EL    L  I +F     RP IAV+  I  AHL      E  A+AKA IF    +    
Sbjct: 166 TELSSFQLAGIDKF-----RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYA 220

Query: 224 FLNYDDSF 231
            +N DD  
Sbjct: 221 VVNADDPL 228


>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
 gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 241 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae
           TIGR4]
 gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|147678195|ref|YP_001212410.1| UDP-N-acetylmuramate--L-alanine ligase [Pelotomaculum
           thermopropionicum SI]
 gi|189029016|sp|A5D144|MURC_PELTS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146274292|dbj|BAF60041.1| UDP-N-acetylmuramate-alanine ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 123/304 (40%), Gaps = 30/304 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           + D+V  + S +IP   ++ V      L  +++  + A L  +   IA+ G+ GKTTT  
Sbjct: 63  DADLV--VASTAIPPDNIELVEARKRGLPVMHRADLLAWLMRRQKGIAVAGAHGKTTTTS 120

Query: 125 MLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           M  + L  + +  T   IG   + IG    L R       G + +  +   +  FL   +
Sbjct: 121 MTALVLEKNGMDPTI-VIGGELSEIGGNAKLGR-------GEYLVAEADESDGSFLK--L 170

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHA 241
            P I +IT I   HL  +  +E I +A       + ++G      DD    ELL      
Sbjct: 171 DPVIEIITNIEDDHLDYYRSVENILAAFRRFMAKVPESGLAVACLDDPRLRELLAGYDRP 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTL 300
                 Y+   +  AD+ +R  +   + +  +V  +G  +  +   + G H   N +  +
Sbjct: 231 C---LTYAL-DNPEADYTMRNIRLMRQVTAGDVYYRGGFLGCLELSVPGRHNLSNAMAAV 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   +    +    AL  F    G G+R++         +ID+ Y  +P+ +KA +   
Sbjct: 287 AVGRFVGLAFEGIAAALKDFR---GAGRRFQLTGEVNGIKVIDD-YAHHPSEIKATLKAA 342

Query: 361 SQIS 364
            Q+ 
Sbjct: 343 GQVK 346


>gi|307544553|ref|YP_003897032.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
 gi|307216577|emb|CBV41847.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
          Length = 507

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 124/295 (42%), Gaps = 32/295 (10%)

Query: 182 VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P +A++T I   H++ + G  E +     E    L   G   L  DD+    L  + +
Sbjct: 207 LQPMVAIVTNIDADHMATYGGDFERLKGTFIEFLHNLPFYGLAVLCIDDANVRGLIERVN 266

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLM 298
               +   ++G S++AD++L  + Q   E S++  +  G   +EV     G H A N + 
Sbjct: 267 ----RQFVTYGFSEDADYRLENFVQHGGEVSFIARRPDGLAPLEVRLAMPGEHNALNAMA 322

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPAS 352
            + + S    +    ++ L+ F    G G+R++          +G   L+D+ Y  +P  
Sbjct: 323 AIAVASDAGVEDAAILRGLASF---AGVGRRFQVHGHFASPQGEGEVMLVDD-YGHHPRE 378

Query: 353 MKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           ++  I  + +  P    RR+ +L          +L + F   LA V +L  +  V+ +G 
Sbjct: 379 VEMVIKAVREGWPE---RRLVMLYQPHRYSRTRDLFEDFVRVLAGVDTLLLLD-VYSAGE 434

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------GDVVVVKSSNSCG 456
             L   D    +  +     +D +F+  +S L +        GD+++ + +   G
Sbjct: 435 SPLPGADGRTLAGSIRQRGEVDPIFVQDKSELPELLAKVLRPGDILITQGAGDVG 489


>gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita
           DSM 44233]
 gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM
           44233]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 139/355 (39%), Gaps = 31/355 (8%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           + + G+ GKT+T  MLT+AL  + +  ++A        IG  LT + +      G   + 
Sbjct: 123 VCVAGTHGKTSTTSMLTVALQHAGLDPSFA--------IGGELTGSGLGAHHGQGDVFVA 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL+    PH A++T I P HL +    E   +   +  E +E  G + +  D
Sbjct: 175 EADESDGSFLS--FSPHGAIVTNIEPDHLDHHGTAEAYTAVFDQFIERIEPGGFLVICAD 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQL-QGKSMEVVH 285
           D     L A+     ++ + ++G++ +A  +L      S+ +  E  V L  G ++ +  
Sbjct: 233 DPGSAALAARVR---LRRLVTYGRAADAVVRL-AVDPASDPATGEPVVTLADGTAVPLRL 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HM  N +  L     L  D D     L+ +    G  +R+      G  T+ D+ 
Sbjct: 289 TVPGDHMLLNAVAALAAGVELGVDADLLAAGLAGY---TGVRRRFELKGVAGGVTVYDD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGD--MCEMGELSQSF-----HIDLAEVLSL 398
           Y  +P  + A ++    + P  +GR + V            +  F       DL  VL +
Sbjct: 345 YAHHPTEVAAQLAAARGVVP-ADGRLVVVFQPHLYSRTATFATEFGAALGTADLVVVLDI 403

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           Y        G     +  A+P    V Y         F+   +  GD+V+   + 
Sbjct: 404 YGAREDPRPGVTGELITAAVPAGPDVRYHPERSTAARFVAEIVRAGDLVITMGAG 458


>gi|149175312|ref|ZP_01853934.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
 gi|148845921|gb|EDL60262.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
          Length = 486

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 148/385 (38%), Gaps = 48/385 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + IP F    +LG L        +R K  +  I G+ GK+TT  +    L +   + + +
Sbjct: 110 MGIPQFSYAQMLGHL--------MRQKQGV-CIAGTHGKSTTTALTAFILQNAGVSPSAV 160

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                 IG  L    +      G   +  S   +  FL   + P  A IT I P H   F
Sbjct: 161 ------IGAELCSQNLNGWAGEGALFVAESCEYQRSFLN--LFPFYAAITNIEPDHFDYF 212

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              +++ +A AE    + K GT+ L       + L+    A     I +F   + AD+  
Sbjct: 213 KNQDDMTTAYAEFVARIPKGGTLVLPSTCMGLQKLREACKA----KISTFSLERGADWWA 268

Query: 261 RKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              K  +      +  QG+   E+     G H   N ++   +      D +   + +  
Sbjct: 269 TDIKSTAFGLRFRLFHQGEYFSEISLQKTGKHNVSNAMVAAILCHTAGIDAEQIREGIYE 328

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G  +RY    +    TL D+ Y  +P +++A + +L Q  P    RRI  L +  
Sbjct: 329 F---PGIRRRYERMGSYKGLTLFDD-YAHHPTAIQATLKMLRQEYPD---RRIWCLYEPH 381

Query: 380 EM-----------GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHV 424
           ++           G   Q+  I +A V +    +   L+   V   K+ + R    +  V
Sbjct: 382 QVSRTQALMDYYAGSFQQADRILIAPVYA----AREKLAEEPVETSKELVRRILLHNASV 437

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
            +S ++D +   +++    GD+++ 
Sbjct: 438 SFSSSLDQMLSTLETEAQSGDIIIT 462


>gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F  L+     H  G   Q  +N ++  S+ +     FF+IKG + DGH +I  A+ +GA 
Sbjct: 5   FDTLMNLSIKHIFGPASQT-INYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGA- 62

Query: 67  LVVVNTDMVASIGSLSI-----PVFGVDD---VLGALNKLAVAARLRSKATIIAITGSVG 118
            V V    +  +  LS          VDD   V+ + +K+        K   I +TG+ G
Sbjct: 63  -VAVFGTSIEKLRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDY-TDEKIETIGVTGTNG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGS 142
           KTT    +   L+ +K     IG+
Sbjct: 121 KTTVAAYVRSLLTLLKLPTGSIGT 144


>gi|288553163|ref|YP_003425098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
 gi|288544323|gb|ADC48206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDV 160
           A + S+A +IAITGS GKTTT  ++   L +  K     G    +IG V   +A+     
Sbjct: 106 ASVLSEADMIAITGSNGKTTTTTLIYEMLKNSAKNPLIAG----NIGTVSCDVAKGAASD 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E     L      T    P+++V+  +  AHL      EE  +AK++I     + 
Sbjct: 162 DVIVLEASSFQL----LGTENFHPNVSVLLNLFDAHLDYHGTKEEYVAAKSKITANQTED 217

Query: 221 GTIFLNYDDSFFELLKAKSHA 241
                N DD     +  KS A
Sbjct: 218 DVFVYNLDDPLVSQVAEKSKA 238


>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 123/320 (38%), Gaps = 45/320 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H L+  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLVSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD+  E     + A    T+ ++G    +D   +     S  +   +   
Sbjct: 231 NREKYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTP 286

Query: 278 GKSMEVVHHGIGYHMAQNML 297
            +S+ V    IG     N+L
Sbjct: 287 YESVNVTMKLIGKFNVYNVL 306


>gi|120404494|ref|YP_954323.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
 gi|189029002|sp|A1TAW7|MURC_MYCVP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119957312|gb|ABM14317.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 478

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 38/296 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSY-----NNHI 147
           L + AV ARL +  T + +TG+ GKTTT  ML +AL  S    ++A  G       N H 
Sbjct: 106 LLRPAVLARLMAGHTTLMVTGTHGKTTTTSMLIVALQHSGFDPSFAVGGDLGEAGTNAHH 165

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G   +      + D  + E                RP I V+T I   HL  F  +E   
Sbjct: 166 GSGSSFVAEADESDGSLLEY---------------RPDIVVVTNIEADHLDFFGSVE--- 207

Query: 208 SAKAEIFE----GLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRK 262
            A  E+F+     ++  G + +  DD     L  +    G++ + Y    +   D  L +
Sbjct: 208 -AYTEVFDRFAGRIDPGGALVVCVDDPGARALAERLSGSGLRVLRYGSTGTGALDATLLE 266

Query: 263 WKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           W Q    +   + L  + + + +     G HMA N L  L       AD+++ +  L+ F
Sbjct: 267 WTQQGTGAVASIALRTEARPLTMRLSVPGRHMALNALGALLAAREAGADLESVLDGLAGF 326

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH-GEGRRIAVL 375
              EG  +R+    +     + D+ Y  +P  ++A ++ L  +    G GR I V 
Sbjct: 327 ---EGVRRRFELVGSANGVRVFDD-YAHHPTEVRATLTALRAVVDQAGSGRAIVVF 378


>gi|313890856|ref|ZP_07824480.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120754|gb|EFR43869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 444

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 133/336 (39%), Gaps = 49/336 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N + +A   + +IP     + LG   K  ++           + G+ GKT+T  +L   L
Sbjct: 76  NNEELAYAIAQNIPFKRYHEFLGEFMKQFIS---------FGVAGAHGKTSTTGLLAHVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +I  T   IG             R   +  + +FE   S   E  F+ +   P  ++IT
Sbjct: 127 KNITNTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPYY--PEYSIIT 172

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GIE++ SA  +  + ++K   +F+  +D   EL K  S A     IY +
Sbjct: 173 NIDFDHPDYFTGIEDVFSAFNDYAKHVQK--ALFVYGEDE--ELKKITSSA----PIYYY 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTAD 309
           G  +N DF      + +  S  +V+   + +   H    G H   N    +  + I   D
Sbjct: 225 GFEENNDFIAFDITRTTNGSDFKVKHDDQIIGQFHVPAYGRHNILNATAVIANLYIAGVD 284

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
           ++   K +  F      G + R        T+I + +  +P  + A I    Q       
Sbjct: 285 MELVAKHMVTF-----SGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 339

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                PH   R IA+L +  +   L+++  + LA++
Sbjct: 340 VAIFQPHTFTRTIALLDEFAQA--LNEADSVYLAQI 373


>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
 gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 149/388 (38%), Gaps = 51/388 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H LL  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLLSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFE 166
             ++   + +       IG+ N  IG          P  LTL +  +      VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++     LN DD+   E +++ +      T+ ++G    +D   +     S  +   +  
Sbjct: 231 DREKYAVLNNDDAVTAEYMRSTA-----ATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVT 285

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +S+ V    IG     N+L       +    ++T I  +       GR +       Q
Sbjct: 286 PYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVDGG--Q 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS 364
            +  ++D  Y   P S++  +    Q +
Sbjct: 344 NYTVIVD--YAHTPDSLENVLKTAKQFA 369


>gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 150/381 (39%), Gaps = 54/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+       +   L +P  
Sbjct: 22  VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEP---PAPDGLPVPAD 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 79  AI-AVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 138 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSSHALDQGRVDAVH 193

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237
             +AV T +   HL     + +  +AKA++F   GL+      +N DD+F    F  L  
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAA---VVNLDDAFGHTLFAALDP 250

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQN 295
              A+G+ +        +AD  +       + + +   + ++G+   V    +G     N
Sbjct: 251 ALRAIGVSS------RAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDN 304

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L   G +  +          L    P  GR  R   A       L+   Y   P +++ 
Sbjct: 305 LLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQ 361

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A+S L     H + R I V G
Sbjct: 362 ALSSLRS---HAQDRLICVFG 379


>gi|87123641|ref|ZP_01079491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
 gi|86168210|gb|EAQ69467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           + ++A+A +  ++   I ITG+ GKTT  ++L   LSS    +A +     H    L L 
Sbjct: 97  IGEMALAWQFLNRTPWIGITGTNGKTTVTQLLQHVLSS-GGLHAPMAGNVGHSATELALS 155

Query: 154 --ARMPVDVDFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A  P D D    +  +  +   +     +V P I + TT+ P HL     +E   + K
Sbjct: 156 LSAVAPNDGDPATPDWLVMEMSSYQIEAAAIVAPRIGIWTTLTPDHLERHGTLEAYRAIK 215

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGI 244
             +   LE++     N DDS     +A   H L I
Sbjct: 216 RGL---LERSQIRIFNADDSDLSRQRASWDHGLWI 247


>gi|306820978|ref|ZP_07454597.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550919|gb|EFM38891.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +R HI  I  I P HL      EE   AK  I E       + LN DD   ++   KS  
Sbjct: 172 LRVHIGAILNITPDHLERHKTFEEYKKAKYRIAENQSSDDFLILNKDDKEIDIKNVKS-- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNML 297
              K IY   K K  D         SE+  +   L  K+ E++  G    +G H  +N L
Sbjct: 230 ---KVIYFSMKEKLEDGVYYD----SERQAIISSLFSKNQEIIKRGDINLLGDHNVENTL 282

Query: 298 MTLGI 302
             + I
Sbjct: 283 AAIAI 287


>gi|300726288|ref|ZP_07059741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
 gi|299776485|gb|EFI73042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 10/162 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT    T  +  I KT         +IG  L L 
Sbjct: 90  ISEIEFAGRY-TDAKMICITGSNGKTTT----TSLIYHIFKTAGYDAGLAGNIGNSLALQ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                 ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 145 VAEEPHEYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDNKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
            +   +  +     DD   +    K    G    +S  K KN
Sbjct: 201 LQNQTQEDSFIYWNDDPVIQKELNKFKITGRACPFSEIKEKN 242


>gi|210623279|ref|ZP_03293696.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
 gi|210153680|gb|EEA84686.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 59/371 (15%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+         YA +         P  L    + +  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSAIFE-----YADLD--------PTILVGGNLSMIGG 144

Query: 164 IFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             ++G S+     F+T             P I+++  I   HL  FSGI+EI ++  +  
Sbjct: 145 NVKIGHSN----HFITEACEYVDSFLNFNPKISIVLNIEEDHLDYFSGIDEIKASFNKFG 200

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----QCSEQS 270
           + L   G   +N DD     +     A    T+  +G +K+ D  ++  +     C    
Sbjct: 201 KLLPPDGYFIINGDDENTADILYDVKA----TVIKYGSNKDNDAVIKNIEFDELGC---G 253

Query: 271 WMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGK 328
             ++   G+ +      + G H   N +  + I SI++  DV+T  + +  +    G G+
Sbjct: 254 IFDLVYNGEDLGKFELSVRGLHNIYNAVAAI-ITSIVSGIDVETIKRNIKKYR---GVGR 309

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMC 379
           R+         T++D+ Y  +P  +K+ +S   +I          PH   R  ++L +  
Sbjct: 310 RFEFKGKYNGATIVDD-YAHHPTELKSTLSTAKRIKKNRLWCIFQPHTYSRTKSLLNEFS 368

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQ 438
           +       F  D   V  +Y          H   L + L   +I   Y +  D +  ++ 
Sbjct: 369 DA-----FFAADKVIVTDIYAARETDPGDIHSTDLVEKLYHNNIDAKYIKEFDDIVEYLA 423

Query: 439 SSLVDGDVVVV 449
            ++   D V+ 
Sbjct: 424 DNVEPDDFVIT 434


>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida W619]
 gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           W619]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AI+GS  K+T   ++    +   K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPIVAISGSNAKSTVTTLVGEMAAKAGKHVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +      +  +SFG ++  DF+    ++   + ++  + Q
Sbjct: 215 NRQDALSRPLPVEG-----RPCWSFGLNQ-PDFKAFGLREVDGEKYLAFEFQ 260


>gi|157369007|ref|YP_001476996.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia proteamaculans
           568]
 gi|167017284|sp|A8G9S8|MURC_SERP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157320771|gb|ABV39868.1| UDP-N-acetylmuramate--alanine ligase [Serratia proteamaculans 568]
          Length = 492

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 46/281 (16%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +VVV+T + A    L         V+     LA   R R     IA+ G+ GKTTT  
Sbjct: 79  ASVVVVSTAISADNPELVAAREARIPVIRRAEMLAELMRFRHG---IAVAGTHGKTTTTA 135

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRFLT--- 179
           M    +SSI   YA  G               P  V+ G+ +   +H  LG  R+L    
Sbjct: 136 M----VSSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGSSRYLIAEA 175

Query: 180 --------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                   HL +P +A++T I   H+  + G  E +          L   G   +  DD 
Sbjct: 176 DESDASFLHL-QPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMCVDDP 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIG 289
               L  +   +G + I ++G S +AD ++  ++Q   Q    +  Q K  M V  +  G
Sbjct: 235 VVRELLPR---VG-RHITTYGFSDDADVRIESYRQVGPQGHFTLSRQDKPLMTVTLNAPG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            H A N    + + +    D    ++AL+ F   +G G+R+
Sbjct: 291 RHNALNAAAAVAVATEEGIDDADILRALAGF---QGTGRRF 328


>gi|82542695|ref|YP_406642.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii Sb227]
 gi|187730669|ref|YP_001878901.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii CDC
           3083-94]
 gi|109892737|sp|Q326E4|MURC_SHIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620431|sp|B2U296|MURC_SHIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81244106|gb|ABB64814.1| UDP-N-acetyl-muramate:alanine ligase [Shigella boydii Sb227]
 gi|187427661|gb|ACD06935.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii CDC 3083-94]
 gi|320183622|gb|EFW58465.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098948|gb|EGJ03899.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 3594-74]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H+  + G  E +          L   G   +  DD
Sbjct: 176 DESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F    G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESFL---GTGRRF 328


>gi|312959058|ref|ZP_07773577.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
 gi|311286828|gb|EFQ65390.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 26/258 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     +  +      +   ++G S++AD +    +Q   Q++  V +   + ++V  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEDADVRAINVRQEGMQTYFTVLRPDREPLDVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F    G G+R++      ++ G   L+
Sbjct: 285 MPGNHNVLNSLATICIATDEGVSDEAIVEGLSRF---AGVGRRFQVYGQLPVDGGDVMLV 341

Query: 343 DESYNANPASMKAAISVL 360
           D+ Y  +P  + A I  +
Sbjct: 342 DD-YGHHPTEVAAVIKAV 358


>gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
 gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
          Length = 477

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +PV+G          + +A RLR    A  +A+TG+ GKTTT  ML   L +     A 
Sbjct: 99  DVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAA 149

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +G    +IGV L  A +  +  + +  + +S   ++ +   L R   A +  +AP HL  
Sbjct: 150 VG----NIGVSLLDAVLGEET-YDVLAVELSSY-QLHWAPSL-RADSAAVLNLAPDHLDW 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
              ++  A+ K  ++EG  +   ++   D +  +L++      G + I
Sbjct: 203 HGSMDAYAADKGRVYEG-NRVACVYNAQDPATEDLVREADVEEGCRAI 249


>gi|329922717|ref|ZP_08278269.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
 gi|328942059|gb|EGG38342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT   +   L S   +    G    +IG PL+  A    + D+ + EL    L    
Sbjct: 1   GKTTTTTWVGEMLESAGLSPIVAG----NIGTPLSEAAATATENDWMVVELSSFQLKG-- 54

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             T   RP IA +  +   HL    G+++  ++KA++F       T  LN+DD
Sbjct: 55  --TEAFRPRIACLLNVTETHLDYHGGMDDYVASKAKLFANQTSEDTAVLNWDD 105


>gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
 gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 157/389 (40%), Gaps = 50/389 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I+ +  +  I+I ++S  P + FFA+ G    G+DFI  A+  GA L++ +   + S 
Sbjct: 7   IEIIKKLNIRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQAHITSY 66

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT------------------ 120
            +    V  V ++   +  +      +    ++A+TG+ GKT                  
Sbjct: 67  SN----VIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAA 122

Query: 121 --------TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSH 171
                   TT + L   L+  K    C  +  ++I     L ++  + ++F   E     
Sbjct: 123 SIGTLGVITTNDHLNKRLNQNKTKPECATTM-SYIQTRYLLHQLATNGINFVALEASSHG 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDS 230
           L + R +   ++   A  T+ +  HL     + +   AK ++F E +   G   +N + +
Sbjct: 182 LDQNRLMD--IKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNIN 239

Query: 231 FFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              ++++K +   G+K +      +  D Q+   +       +  + +    +     IG
Sbjct: 240 ELSIIQSKITDEFGLKLL---SVEQQGDIQIINVQSSLNGQKVHFRYKNSDYKFEVLVIG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTA--IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                N+L+ L +   + A  D+A  I  LS   P +GR ++ +       +  +D  Y 
Sbjct: 297 RVHITNILIALLLA--VNAGFDSAKLIPLLSNLKPIKGRMEKIQFG---NCYAFVD--YA 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P ++   ++ L  +  + +GR I + G
Sbjct: 350 LTPNALATMLTELRTL--NSKGRLITIFG 376


>gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 479

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 24/225 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR    +  F A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 23  IESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFED----QKRVF 78

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPH-------------IAVIT 190
            I   L   R        I  L   +S+    + L   V  H             +A+ +
Sbjct: 139 GIYPDL---RESTHTTLDILSLYKTISYYKNYQNLVMEVSSHSLDQKRVEGLDFDVAIFS 195

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            ++  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 196 NLSHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 239


>gi|290579918|ref|YP_003484310.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           NN2025]
 gi|44888211|sp|Q8DSP4|MURC_STRMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24378099|gb|AAN59364.1|AE015001_9 putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           UA159]
 gi|254996817|dbj|BAH87418.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           NN2025]
          Length = 452

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 123/298 (41%), Gaps = 40/298 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T + + G+ GKT+T  +L   L +I  T   IG      G    LA    +  + +FE  
Sbjct: 113 TSLGVAGAHGKTSTTGLLAHVLKNITDTSYLIGD-----GTGRGLA----NSQYFVFE-- 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P  ++IT I   H   F+G++++ +A  +  + ++K   +F+  +
Sbjct: 162 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGVDDVFAAFNDYAKQVKK--GLFVYGE 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           D +   L + +       IY +G   N DF      + +  S  +V+     +   H   
Sbjct: 217 DPYLRKLTSSA------PIYYYGFKDNDDFVAYDIMRSTNGSDFKVRHGQNELGSFHVPA 270

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    +  + I   ++D   + L  F    G  +R+   L     T+ID+ + 
Sbjct: 271 FGRHNVLNATAVIANLYIAGVEMDLVRQHLKTF---SGVKRRFSEKLIND-VTIIDD-FA 325

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            +P  + A +    Q            PH   R IA+L +  +   L+++  + LA++
Sbjct: 326 HHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQA--LNEADSVYLAQI 381


>gi|303273394|ref|XP_003056058.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545]
 gi|226462142|gb|EEH59434.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545]
          Length = 594

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 126/328 (38%), Gaps = 67/328 (20%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141
           IPV+         N+     R   +  ++A+ G+ GKTTT  M+  + L +     A +G
Sbjct: 158 IPVY---------NRAQWLTRTSKRKNVVAVAGTHGKTTTASMVAMVLLENDLDITALVG 208

Query: 142 SY-------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                     N IG    L  +  D   G F LG+S             P IAVIT +  
Sbjct: 209 GNVRQFPGGENAIGGSGNLFLIEADEYDGAF-LGLS-------------PQIAVITNVEF 254

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  + ++  A  +    +E  G+I +  DD+      +K+ +  ++ + ++G ++
Sbjct: 255 DHPDLFKCLRDVRVAFKKFTRRIETGGSIVICGDDANSSTFMSKACSSKLEVV-TYGFAR 313

Query: 255 NADFQLRKWKQCS------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           N  ++    K  +        S  +V+ Q  S+ +     G H   N L  +   S +  
Sbjct: 314 NNLWRAMNVKSNTGGGTTFTVSRADVKKQDVSISLP----GRHNVLNALAAIATASCIRD 369

Query: 309 DVDTAIKALSVFHPKEGRGKRYRC-------ALNQ-----------GFF---TLIDESYN 347
             D +  A S       R K   C       ALN            GFF    L D+ Y 
Sbjct: 370 ACDASCAAPSPSQRGCHRMKNLLCFDPVMFTALNNYRGIARRMQFVGFFGSCALYDD-YA 428

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL 375
            +P ++KAAI  + +  P     R+ VL
Sbjct: 429 HHPTAIKAAIGAMREQYPEA---RVTVL 453


>gi|149179566|ref|ZP_01858100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planctomyces
           maris DSM 8797]
 gi|148841594|gb|EDL56023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planctomyces
           maris DSM 8797]
          Length = 269

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFEL 167
           +I +TGS GK+TT  M+     SI K          +IG+ L   L ++  + D+ + EL
Sbjct: 122 VIGVTGSNGKSTTTAMI----HSILKAAGHRCWLGGNIGISLLPELDQIQSE-DWVVLEL 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +  +     P IAV+T  +P HL     +E    +K  I     ++    LN 
Sbjct: 177 SSFQLEALNRIQ--ASPQIAVVTNFSPNHLDWHQNLEHYRQSKQTILRWQTESDVAVLNQ 234

Query: 228 DDSFFELLKAKSHALGIKT 246
           DD   +  +     L   T
Sbjct: 235 DDPELQTWRTAGSILTFGT 253


>gi|330981215|gb|EGH79318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 460

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 93  IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 144

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 145 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 202

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 203 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 258 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A IS +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 315 VDD-YGHHPREVAAVISAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 369


>gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV200]
 gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|328849608|gb|EGF98785.1| hypothetical protein MELLADRAFT_50887 [Melampsora larici-populina
           98AG31]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE--EIASAK-AEIFEGL 217
           D     LG+  L EI  L   VRP    + T    +   FS ++  E+ + + A   E L
Sbjct: 238 DIAAKSLGIPQLLEISDLCDSVRPDERSVMTYIAQYFHAFSSMDKAEVEARRVANFVENL 297

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCSEQSW 271
           +   T   +Y+    EL+    H +  +      + YS  K + ADFQ  K+KQ  ++ W
Sbjct: 298 KSIWTSMNDYERRVTELMDEIRHTIATRLTPALPSTYSLVKEQAADFQ--KYKQTIKRDW 355

Query: 272 M 272
           +
Sbjct: 356 V 356


>gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum MopnTet14]
          Length = 802

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 33/282 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L  +  T +  IG  N   G+  + 
Sbjct: 90  IHRAELLAELAKDQISIFVTGSHGKTTVSSLITAILQKLGTTPSFAIGGLNED-GINGSS 148

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                      FE  ++   E         P  +VIT I   HLSNF G      A  + 
Sbjct: 149 G----------FEYFVAEADESDGSIQHYLPEFSVITNIDDEHLSNFGGDRGALLASLQD 198

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F       + + N D S   LL++           +FG S + D  +  ++Q   + +  
Sbjct: 199 F-AFRTRRSCWYNGDCS---LLRSSLKG------NTFGFSSSCDLHILSYRQEEWRVFFT 248

Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            Q +G   E V   + G H   N    +GI   L  D  T   AL  F   + R +R   
Sbjct: 249 AQYRGILYEDVEVQLAGEHNVMNAAAAMGIALSLGIDELTIRDALREFSGVQRRLQRKN- 307

Query: 333 ALNQGFFTLIDESYNANPAS-----MKAAI---SVLSQISPH 366
            +++ F  L D +++ +  S     ++AA+    VL+   PH
Sbjct: 308 -VSETFLFLEDYAHHPSEISCTLQAVRAAVGQRRVLAICQPH 348


>gi|229134722|ref|ZP_04263531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
 gi|228648768|gb|EEL04794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 31/263 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A++  + +  +
Sbjct: 110 SAAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQLAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEADYSI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSM 281
           +N DD+  +++   +++ G K ++S              K+  + ++++   +  +G+ +
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFS------------TTKEIEDGAYIKDNALYFKGEKV 267

Query: 282 EVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V   +  G H  +N+L  + I  +L    +  I  L  F   + R +      N+ F+
Sbjct: 268 VKVSDIVLPGKHNLENILAAMSIAKLLGVSNEAIIAVLKSFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
              ++S   N  + + A+S  +Q
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ 347


>gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 498

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 142/375 (37%), Gaps = 78/375 (20%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI+G+ GKTTT  M++  L  + +  TY   G       VP          D G    G
Sbjct: 126 IAISGTHGKTTTSAMISTILKKAELDPTYVIGGE------VP----------DIG----G 165

Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +HLG+                 LV P I VIT I   HL  +  +EEI +A       +
Sbjct: 166 NAHLGKGNLFVAEACEYNSSFLDLV-PSIGVITNIEEDHLDYYGNLEEIVNAFGHFANLI 224

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K G + +N DD    +   +S              K   + LR       +  +     
Sbjct: 225 AKNGLLVVNDDDRNVAVAAKRSVC------------KRETYSLRHTSHWYAKKILPTTQG 272

Query: 278 GKSMEVVHHGI----------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                V + G           G H   N L  + + + +  D +    +L  F   +G  
Sbjct: 273 INKFRVYNRGKIFGDFWLKIPGSHNILNALAAIAVCTSIGVDKEIIKTSLESF---KGAK 329

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------- 380
           +R++    +   T+ID+ Y  +P  +   +    ++ P    R+I  +    +       
Sbjct: 330 RRFQIVAIKNNITIIDD-YAHHPTEIDVTLKAARELYP---ARKICCVYQPHQYSRTRHL 385

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRS-IHVHYSETMDGLF 434
           + +LS+SF+  LA+ ++L +I     + F       L L + + ++ + + Y   M+ + 
Sbjct: 386 LKKLSESFY--LADKVALADIYESRDNDFEKTSISSLKLYEEIRKTGVDIQYYPQMEYIT 443

Query: 435 LFIQSSLVDGDVVVV 449
             +  +   GDV++ 
Sbjct: 444 DMLCLNAKPGDVIIT 458


>gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           succinogenes 130Z]
          Length = 488

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 33/226 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + +DSRS+     F AIKG + DG  FI  A+++ A  V+   D  +    +    +IPV
Sbjct: 23  MCLDSRSVKTGCLFVAIKGHNVDGRRFIPVAIERHAAAVLAECDNESEHLQVRFERNIPV 82

Query: 86  FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
               ++   L+++A       + RL     +  +TG+ GKTT  ++L      +    A 
Sbjct: 83  ISYFNLPEHLSEIADKFYDGPSQRL----ILTGVTGTNGKTTVSQLLAQWARILGNIPAV 138

Query: 140 IGSYNN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                I V  +LAR +    DF   E+  SH G ++     ++
Sbjct: 139 MGTVGNGLLGQLQSAANTTGSAIEVQSSLARFIEQGADFAAIEVS-SH-GLVQKRIEALK 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               + T ++  HL     +   A AK  +F  L     I +N DD
Sbjct: 197 FTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTALPSKYQI-INADD 241


>gi|325123865|gb|ADY83388.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 34/297 (11%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L           F + 
Sbjct: 125 IAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALGE-------SRFIVA 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 177 EADESDASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   QS   V  +G+  + +  +
Sbjct: 235 DDANIREILPR---VG-RPVITYGFNEDNDIRAVDIEQDGMQSHFTVLRKGREPLRLTIN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--- 343
             G H   N L  +G+ +      D   +AL  F    G G+R++    QG F L D   
Sbjct: 291 QPGLHNVLNALAAIGVATDEGVSDDAISRALEGF---SGVGRRFQV---QGEFELADGNV 344

Query: 344 ---ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS
Sbjct: 345 KLVDDYGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLS 397


>gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
 gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
          Length = 493

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 153/399 (38%), Gaps = 43/399 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M     F + L+ ++   I       V  +  DSR       F   KG   D H+FI   
Sbjct: 1   MEVFMKFREWLEELEYDVISGNLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDV 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ G   +VV        G  +I V    + L AL   A   R + K   I +TG+ GKT
Sbjct: 61  VKAGVKALVVERQAEIPDGVTAIRVHSSREAL-ALLSAARFGRPQEKMITIGVTGTKGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------LGMSHL- 172
           TT  M+   L S  K    IG+    IG  +T         + +FE        G  ++ 
Sbjct: 120 TTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEYMV 179

Query: 173 ---GEIRFLTHLV---RPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIF 224
                  F  H V   R    + T I+P H+     +   E    K+++   L +     
Sbjct: 180 MEVSSQAFKMHRVDGIRFDYGLFTNISPDHIGPDEHADFAEYLYYKSQL---LSRCRIGI 236

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGK-S 280
           +N DD  + E++K  +  L      S+   + ADF   +    SE  +  +E  + G+  
Sbjct: 237 VNRDDEHYREIIKDTACELA-----SYSLEQEADFMAGQIHYVSEPEFVGLEFDVTGRYK 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +E   +  G     N L  + + S L      V  A++ LSV    E      +C +   
Sbjct: 292 LEARVNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLSVNGRMEIVYSSKKCTV--- 348

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              ++D ++NA   SM++ +  L +  P    R + V G
Sbjct: 349 ---IVDYAHNA--VSMESLLKTLREYHPK---RLVCVFG 379


>gi|283783878|ref|YP_003363743.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
 gi|282947332|emb|CBG86877.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSDDADVRVEDYQQIGPQGHFSLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 277 QGMPELRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|77409926|ref|ZP_00786534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77171465|gb|EAO74726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 300

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P + + +   D D  + EL    L  ++      RPHIAVIT + P HL      E
Sbjct: 5   NIGFPASEVVQAADDKDILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFE 60

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +  +AK  I   +  +  + LN++    + L   + A    TI  F  ++  D    + K
Sbjct: 61  DYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDK 116

Query: 265 QCSEQSWMEVQLQGKS-MEVVHHGI-GYHMAQNMLMTLGIVSI 305
           Q           +G++ M V   G+ G H  +N L T+ +  +
Sbjct: 117 QLF--------YKGENIMSVDDIGVPGSHNVENALATIAVAKL 151


>gi|323975748|gb|EGB70844.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TW10509]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|315181132|gb|ADT88046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           NCTC 11218]
          Length = 439

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 38/259 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           +IAITGS GK+T  + LT  +++       +G    +IGVP L L   P   +  + EL 
Sbjct: 110 VIAITGSNGKSTVTD-LTGVMANAAGIATAVGG---NIGVPALDLLAQP--AELYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     L        A    ++  H+  + G+     AK  IFE  +   T  +N D
Sbjct: 164 SFQLETTSSLAVTA----AAFLNLSEDHMDRYDGMTGYRQAKLRIFEHAQ---TAVVNAD 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287
           D+     +    A   +T+  FG  ++A+F        ++    EV L    + +     
Sbjct: 217 DT-----QTYPDAYSGRTV-RFGLEQSAEF------TTAQHDGKEVLLANGEVVLPTSDL 264

Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342
             +G H   N+L  L ++     +    + AL     K   G  +RC   A NQG    +
Sbjct: 265 SLVGRHNVANVLTVLALLDAAGVNYTNTLPAL-----KSYTGLTHRCQVVADNQG-IKWV 318

Query: 343 DESYNANPASMKAAISVLS 361
           ++S   N AS  AA+S L+
Sbjct: 319 NDSKATNVASTLAALSGLT 337


>gi|313156845|gb|EFR56285.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Alistipes sp.
           HGB5]
          Length = 449

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 19/129 (14%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +V  + +  IPV         ++++  A R   +A  I ITGS GKTTT  ++   +   
Sbjct: 78  LVRKLRAAGIPV---------ISEIEFAGRYTGRAKCICITGSNGKTTTTSLIYKIMRDA 128

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTI 192
               A  G    +IG     +    D D+ + EL    L G  +F     R HI V+  I
Sbjct: 129 GMRVALGG----NIGESFAYSVATGDYDWYVLELSSFQLDGMYKF-----RAHIGVLMNI 179

Query: 193 APAHLSNFS 201
            P HL  + 
Sbjct: 180 TPDHLDRYD 188


>gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 516

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P G V G  ID+R +   E F A+ G H  G  F   A+ +GA  V+ +   +  + +  
Sbjct: 36  PAGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVLTDAAGLDLVANPE 95

Query: 83  IPVFGVDDV 91
           +PV  V DV
Sbjct: 96  VPVITVPDV 104


>gi|126640338|ref|YP_001083322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ATCC 17978]
          Length = 435

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L R  +D+  
Sbjct: 87  RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGN----------LGRPALDLLK 136

Query: 163 GIFELGMSHLGEIRFLT--HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              EL +  L   +  T  HL    +AV+  ++  HL     +     AK  IF+G +K 
Sbjct: 137 DQPELLVLELSSFQLETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK- 194

Query: 221 GTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +  N DD+    L       +S  L    +  +G  ++AD  L  W  C  Q  +   
Sbjct: 195 --VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL--WLACGLQRLI--- 247

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 248 ---KSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 294


>gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|257462515|ref|ZP_05626927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D12]
 gi|317060170|ref|ZP_07924655.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           D12]
 gi|313685846|gb|EFS22681.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           D12]
          Length = 433

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + EL    L  +   T    P+I+++T + P HL+ ++ +E+  + K  I +  EK 
Sbjct: 141 DYAVLELSSYQLENVYEFT----PYISMVTNLTPDHLTRYANLEDYYNTKFHICQNQEKE 196

Query: 221 GTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG- 278
            + FL N D    E+ K ++   G K   S  + + AD        C +     +  QG 
Sbjct: 197 NSFFLFNIDHE--EVRKRETLMKGRKI--SLSRKQEAD-------TCVKDG--NILFQGE 243

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           K M V    + G H  +N L  +    +L  D       L    P E R +R       G
Sbjct: 244 KVMSVSELSLKGSHNLENSLFIVTAGKLLGLDSKIIRDFLRNTEPLEHRMER---CFQYG 300

Query: 338 FFTLIDESYNANPASMKAAIS 358
               I++S   N  S K A+ 
Sbjct: 301 KLQFINDSKGTNIDSAKFALE 321


>gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 492

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 24/225 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR    +  F A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 28  IESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFED----QKRVF 83

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 84  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 143

Query: 146 HIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPH-------------IAVIT 190
            I   L   R        I  L   +S+    + L   V  H             +A+ +
Sbjct: 144 GIYPDL---RESTHTTLDILSLYKTISYYKNYQNLVMEVSSHSLDQKRVEGLDFDVAIFS 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            ++  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 201 NLSHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 244


>gi|15799772|ref|NP_285784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 EDL933]
 gi|15829346|ref|NP_308119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751402|ref|ZP_02776424.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755696|ref|ZP_02780703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764033|ref|ZP_02789040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771312|ref|ZP_02796319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776932|ref|ZP_02801939.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781973|ref|ZP_02806980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801515|ref|ZP_02826522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|195939304|ref|ZP_03084686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208807723|ref|ZP_03250060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812067|ref|ZP_03253396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818888|ref|ZP_03259208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398858|ref|YP_002268696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325428|ref|ZP_03441512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791225|ref|YP_003076062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. TW14359]
 gi|291280913|ref|YP_003497731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|30316080|sp|Q8X9Y9|MURD_ECO57 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12512791|gb|AAG54392.1|AE005185_9 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359548|dbj|BAB33515.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767768|gb|EDU31612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014554|gb|EDU52676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000408|gb|EDU69394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357000|gb|EDU75419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359908|gb|EDU78327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365875|gb|EDU84291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376376|gb|EDU94792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727524|gb|EDZ77125.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733344|gb|EDZ82031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739011|gb|EDZ86693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160258|gb|ACI37691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209746564|gb|ACI71589.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746566|gb|ACI71590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746568|gb|ACI71591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746570|gb|ACI71592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746572|gb|ACI71593.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|217321649|gb|EEC30073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590625|gb|ACT69986.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760786|gb|ADD54747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190389|gb|EFW65039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320642127|gb|EFX11478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. G5101]
 gi|320647490|gb|EFX16285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. 493-89]
 gi|320652824|gb|EFX21062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. H 2687]
 gi|320658213|gb|EFX25942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663522|gb|EFX30806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320668834|gb|EFX35629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326345192|gb|EGD68935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346954|gb|EGD70688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1044]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 142/355 (40%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F    ++ A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGVQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|24111533|ref|NP_706043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 301]
 gi|62900692|sp|Q83MF9|MURD_SHIFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24050291|gb|AAN41750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 301]
 gi|281599450|gb|ADA72434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2002017]
 gi|332762278|gb|EGJ92545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2747-71]
 gi|332762649|gb|EGJ92914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           4343-70]
 gi|332764934|gb|EGJ95162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-671]
 gi|332768878|gb|EGJ99057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2930-71]
 gi|333009070|gb|EGK28526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-218]
 gi|333022251|gb|EGK41489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-304]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L+ L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALVALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + ++   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLVRYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
 gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
          Length = 498

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 33/278 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG---PHYDGHDFILHAVQ 62
           TF DL      H +    +    G  +DSR + P + F A+     P      F   A++
Sbjct: 4   TFQDLYTP---HDVADWMKQSFQGFELDSRKVKPGQIFIALTSLSQPEKTVQ-FAQKALE 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAV-AARLRSKATIIAITGSVG 118
           +GA  V+  T+   S      P   V DV   +G   K  + A +  + A I+A+TG+ G
Sbjct: 60  QGALAVISETEPDVS------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTGTNG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------TLARMPVDVDFGIFELGMSHL 172
           KTT   ++   +    K  A +G+  N I   L      TL  + +      +    +  
Sbjct: 114 KTTISRLVAEFIMLQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAGAEF 173

Query: 173 GEIRFLTHLVRP--------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             I   +H +           IA  + ++  HL     ++  A AK+ +F   E      
Sbjct: 174 ASIEASSHGLEQGRLNGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFR-FESLKVAV 232

Query: 225 LNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLR 261
           +N DD   + +L A  +      I ++  ++ AD+Q++
Sbjct: 233 INIDDEHAQIMLDAAKNNPAQPKILTYSTTQKADYQVQ 270


>gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae JJA]
 gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae JJA]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|82775495|ref|YP_401842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           dysenteriae Sd197]
 gi|309787236|ref|ZP_07681848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
 gi|118595691|sp|Q32K04|MURD_SHIDS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81239643|gb|ABB60353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella
           dysenteriae Sd197]
 gi|308924814|gb|EFP70309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 180/460 (39%), Gaps = 69/460 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P  L  +  + +  + EL    L     L  
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVLELSSFQLETTSSLQA 172

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 173 VA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D+ L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L     H +G    +LG              D + +    N  +V L  F    ++
Sbjct: 330 ALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLNGDNVRLYCFGRDGVQ 376

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 377 LAALRPEVAEKTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|303234875|ref|ZP_07321500.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
 gi|302493993|gb|EFL53774.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 42/373 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           + A +R+    I ++GS GK+TT  M+   L   K         +  I +   L  +  +
Sbjct: 104 LGALMRNYKYSIGVSGSHGKSTTTSMIAKILIDAK--------VDPSILLGGKLDEIQGN 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V  G  E  ++   E +       P +A+I  I   HL  +  +  I +      + L++
Sbjct: 156 VHCGNSEYMLTEACEYKANILNYYPSMAIILNIDEDHLDFYKDLNHIVATFIGYMKNLDE 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--WKQCSEQSW-MEVQ 275
                +N DD   E L   SH  G   I +FG +++ AD+ +    + +    S+ +  +
Sbjct: 216 NSKAIINIDDKNCEPL--LSHIKG--EIITFGIENEKADYNVHDITFNENGNPSFVVSSE 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              K  E     IG H   + +  +        D+DT  K +  +H        +R    
Sbjct: 272 KFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYH------NLHRRMET 325

Query: 336 QGFF--TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGEL 384
            GF+    +   Y  +P  +K  +  L +           PH   R   +L D       
Sbjct: 326 IGFYKGCEVKTDYGHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFA----- 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVD 443
           +  +  D   V  +Y     + S  H   L + L ++ ++  Y +T +    +I+S + +
Sbjct: 381 NAFYDCDEVVVTEIYAAREKFDSSIHSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCE 440

Query: 444 GDVVVVKSSNSCG 456
            D+V+   +  CG
Sbjct: 441 NDMVL---TTGCG 450


>gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103]
 gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 23/241 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ + G  +   P   +  +++DSR  A  + F AI G   DG  FI  A+ +G   V+ 
Sbjct: 10  LRDLLGPWVPDAPARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIA 69

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
             +  AS G +     +PV  +  +   L+ LA     +   K  +I +TG+ GKTTT +
Sbjct: 70  EAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQ 129

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR----MPVDVDFGIFEL---GMSHLGEIRF 177
           +L    S + +T A +G+  N +   L  A       VDV   + EL   G S L  +  
Sbjct: 130 LLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGAS-LTAMEI 188

Query: 178 LTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            +H +  H         AV T ++  HL     +++  SAK  +F    + G   +N DD
Sbjct: 189 SSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE-HQVGVAIINADD 247

Query: 230 S 230
            
Sbjct: 248 E 248


>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
 gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 2   HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 61

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 62  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 116

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 117 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 176 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 232 DDNVTEEYMRSTAA----TVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKL 287

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 288 IGKFNVYNVL 297


>gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 502

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
          P   + G+  DSR + P   F A++G   DG+ +I  A++KGAG ++ ++    +  SL 
Sbjct: 18 PDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGAILTDSAEAMATWSLR 77

Query: 83 IPV 85
            V
Sbjct: 78 TDV 80


>gi|52425721|ref|YP_088858.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia
           succiniciproducens MBEL55E]
 gi|59798187|sp|Q65RY7|MURC_MANSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52307773|gb|AAU38273.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 149/376 (39%), Gaps = 65/376 (17%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  M+++  A + +  T+   G       N H+G    L     + D  
Sbjct: 125 IAVAGTHGKTTTTAMISMIYAQAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P ++V+T I P H+  + G  +E+          L   G 
Sbjct: 185 FLHL---------------QPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGL 229

Query: 223 IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKS 280
             +  DD    EL+         + + ++G S+ AD+++  ++Q   Q  +  +   G+ 
Sbjct: 230 SVMCADDPVLLELIPQVG-----RPVITYGFSEEADYRIENYEQTGFQGHYSVITPAGER 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           ++V+ +  G H A N    L +      + +  + AL+ F   +G G+R+          
Sbjct: 285 IDVLLNVPGKHNALNATAALAVAKEEGIENEAILAALADF---QGAGRRFDQLGSFIRPN 341

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I    +            PH   R   +  D   +  LSQ
Sbjct: 342 GKVMLVDD-YGHHPTEVNVTIQAARKGWENKRIVMIFQPHRYSRTRDLFDDFVRV--LSQ 398

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQS 439
              +DL  +L +Y      ++G    A   +L RSI        +  ++T + L   +  
Sbjct: 399 ---VDLLIMLDVYPAGESPIAG----ADSRSLCRSIRNLGQVDPILVTDTAE-LPEIMDR 450

Query: 440 SLVDGDVVVVKSSNSC 455
            L DGD+V+ + + + 
Sbjct: 451 VLQDGDLVLAQGAGNV 466


>gi|329725481|gb|EGG61961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU144]
          Length = 437

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 128/304 (42%), Gaps = 44/304 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        D+  F
Sbjct: 99  NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149

Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E       E R  FL++   P  A++T I   H   F  I+++  A   +   ++K G I
Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD +   L           +Y +G  +  +   +  +   + +  +V ++G+  + 
Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDEIYAKNIQITEKGTQFDVYIKGEFYDQ 254

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + I  +   +V+   +AL  F   + R    + + NQ    L+
Sbjct: 255 FLSPQYGNHNILNALSVIAISYLENMNVENIKEALITFGGVKRRFNETKVS-NQ---VLV 310

Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  + A I           V++   PH   R  A L +  E   LS++  + L
Sbjct: 311 DD-YAHHPREISATIETARKKYPKKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367

Query: 393 AEVL 396
            E+ 
Sbjct: 368 CEIF 371


>gi|320172818|gb|EFW48050.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 21/224 (9%)

Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  M++   A + +  T+   G      GV   L         G + + 
Sbjct: 122 IAIAGTHGKTTTTAMVSCIYAEAGLDPTFVN-GGLVKAAGVHARLG-------HGRYLIA 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +A++T I   H+  + G  E +          L   G   +  
Sbjct: 174 EADESDASFL-HL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCV 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K  M V  +
Sbjct: 232 DDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLN 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             G H A N    + + +    D +  ++AL  F    G G+R+
Sbjct: 288 APGRHNALNAAAAVAVATEEGIDDEAILRALESFL---GTGRRF 328


>gi|291557934|emb|CBL35051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum V10Sc8a]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-ELG 168
           II ITG+ GK+TT  ++   +    K    IG    +IGVP    R     D  I  E+ 
Sbjct: 109 IIGITGTKGKSTTSSLIKFFIEKSGKDTMLIG----NIGVPPLERREEFTKDCVIVCEMS 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL--- 225
              L  ++       P +AV+  + P HL +++      +AK  IF    +  T+ +   
Sbjct: 165 CHQLEYVK-----ASPDVAVLLNVYPEHLDHYTDFAAYRNAKLNIFRYQNENDTLIIGEE 219

Query: 226 --NYDDSFFELLKA 237
              YDD+   ++ A
Sbjct: 220 VKQYDDTKARVITA 233


>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
 gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 120/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   E     + A    T+ ++G   ++D   +     S  +   +    +S++V    
Sbjct: 241 DDPVAEEYMRSTAA----TVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|126649728|ref|ZP_01721964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
 gi|126593447|gb|EAZ87392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
          Length = 449

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 24/223 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDV 160
           A L S A  I ITGS GKTTT  ++   L++  K     G    +IG V   +A+   + 
Sbjct: 106 AYLISDAPFIGITGSNGKTTTTTLIFDMLNNGSKNPLIAG----NIGTVACGVAKEANED 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T   +P I+++T +  AHL      +  A AK  +    +++
Sbjct: 162 DIIVTELSSFQL----MGTKTFKPKISILTNLYDAHLDYHGTFDNYAEAKFAVTRNQDES 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQ 277
                N D        A+S+A  I    S G++ N   AD     W+         + L 
Sbjct: 218 DYFIYNADQPIVVGYAAQSNAQKIP-FSSNGRTVNGISADETTIYWQGEPYMDRANIALP 276

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           GK           H  +N+L  +    ++  D     + L+ F
Sbjct: 277 GK-----------HNLENILAAVAACILVGCDKGKMEEVLATF 308


>gi|282897750|ref|ZP_06305749.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
 gi|281197429|gb|EFA72326.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
          Length = 489

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 116/291 (39%), Gaps = 55/291 (18%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138
           L  P+    DVL AL      A   S    IA+ G+ GKTTT  M+   L  + +  T  
Sbjct: 118 LGCPILHRSDVLAAL-----IADYHS----IAVAGTHGKTTTSSMIGYMLLQAGLDPTIV 168

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--------HLVR--PHIAV 188
             G  N                    +E G + LGE ++L          LV+  P I +
Sbjct: 169 VGGEVN-------------------AWE-GNARLGESKYLVAEADESDGSLVKHTPAIGI 208

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H  +++ +E++     E F+   +   + +   D      + K    GI   Y
Sbjct: 209 ITNIELDHPDHYATLEQV----VETFQTFARGCQVVVGSIDCDIVRDRLKP---GIS--Y 259

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307
           S    + AD+ +      ++ +   V  +GKS+ V+    +G H   N L  + +  +L 
Sbjct: 260 SLDPDQGADYTVTNIDYRADGTTALVWEKGKSLGVLSLQLLGRHNLSNALAAVAVGRVLN 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     K L+ F   EG  +R+         T ID+ Y  +P+ ++A ++
Sbjct: 320 LEFGEIAKGLATF---EGARRRFEFRGEVDGITFIDD-YAHHPSEIRATLA 366


>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus weihenstephanensis KBAB4]
 gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           weihenstephanensis KBAB4]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 106/274 (38%), Gaps = 43/274 (15%)

Query: 17  HSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP     +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE  +AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNREKYAILNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           DD   E     + A    T+ ++G    +D   R
Sbjct: 241 DDPVAEEYMRSTAA----TVVTYGIDVASDIMAR 270


>gi|315653712|ref|ZP_07906632.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
 gi|315489074|gb|EFU78716.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
          Length = 460

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 25/263 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             N+D       EL   K+H +         +S  AD+ +       EQ ++E Q   + 
Sbjct: 227 IANFDQKNILEQELSLTKAHVVTFSE-----ESTQADYYI------GEQ-YLESQADHEI 274

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           M++    I G H  QN L+ + I  ++ A  +     LS F    G   R +  +     
Sbjct: 275 MKISDIKIPGRHNQQNSLVAIAISKLMGASDEDIRSVLSTF---TGAKHRLQYVMTYNNR 331

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
            + ++S + N  +   AI   SQ
Sbjct: 332 RIYNDSKSTNIEAASVAIPSFSQ 354


>gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Photorhabdus asymbiotica subsp. asymbiotica
          ATCC 43949]
 gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Photorhabdus asymbiotica]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
          P+  +  +++DSR  A  + F AIKG   DG  +I  A+ +G   V+      A  G++ 
Sbjct: 18 PECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGVAAVIAEAQGEADSGTVQ 77

Query: 83 ----IPVFGVDDVLGALNKLA 99
              +PV  V D+   L++LA
Sbjct: 78 VIHGVPVVYVSDLNNKLSQLA 98


>gi|237742550|ref|ZP_04573031.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|229430198|gb|EEO40410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
          Length = 468

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 128/328 (39%), Gaps = 40/328 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KGA  V+ +T +  +   LS   +  ++ +  L +  + A+L ++ T 
Sbjct: 58  YNEHD---EENVKGADYVIASTAIKETNPELS---YAKNNGITLLKRGELLAKLLNRETG 111

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  + S   T    G           L  +  +   G  E  ++
Sbjct: 112 IAIAGTHGKTTTSSMLSAVMLSKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              E       + P  AVIT I   HL     ++ I  +  E     +K   I +   N 
Sbjct: 162 EADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFISHTQKEAIICMDCENL 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++   L K KS        YS  K +NA    +  +    ++  E+ +  + +      
Sbjct: 222 KEAITRLPKGKS-----VITYSI-KDENASIFAKNIRITDRKTIFELYINKELIGEFSLN 275

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF---- 338
           I G H  QN L  + +        +   +AL+ F   +G  +RY       L  G+    
Sbjct: 276 IPGEHNIQNSLPVIYLALKFRVSKEEIQEALNKF---KGSKRRYDVLFDKELENGYGNKT 332

Query: 339 --FTLIDESYNANPASMKAAISVLSQIS 364
               +ID+ Y  +P  +KA +  +  I 
Sbjct: 333 KKVRIIDD-YAHHPTEIKATLKAIKSID 359


>gi|226711953|sp|A3M1C6|MURD_ACIBT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193076113|gb|ABO10720.2| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 17978]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L R  +D+  
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGN----------LGRPALDLLK 149

Query: 163 GIFELGMSHLGEIRFLT--HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              EL +  L   +  T  HL    +AV+  ++  HL     +     AK  IF+G +K 
Sbjct: 150 DQPELLVLELSSFQLETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK- 207

Query: 221 GTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +  N DD+    L       +S  L    +  +G  ++AD  L  W  C  Q  +   
Sbjct: 208 --VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL--WLACGLQRLI--- 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 261 ---KSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 307


>gi|167755735|ref|ZP_02427862.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
 gi|167704674|gb|EDS19253.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 48/204 (23%)

Query: 39  PQEAF-----FAIKGPHYDGHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           P E F     F IK P  + H  FIL   ++                   IPV+      
Sbjct: 60  PTELFECDFDFVIKNPGINYHKPFILRLKER------------------KIPVY------ 95

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
               ++ +A ++  K   I +TG+ GKTTT   +T+    +K  Y  +    N +G PL 
Sbjct: 96  ---TEIELAFQVAKKQHYIGVTGTNGKTTT---VTLIDKILKGQYQHVHLAGN-VGTPLC 148

Query: 153 LARMPVDV-----DFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              +  D+      + + E+    L +I RF     +P+++ I  + P HL   + ++E 
Sbjct: 149 DVVLDNDLLNEENHYVVIEMSNFQLLDIERF-----KPYVSTIINLTPDHLDYMASLDEY 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS 230
            ++K  I++  +      +N DD 
Sbjct: 204 YASKTNIYKNTDLDDYFVVNLDDK 227


>gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
 gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 45/284 (15%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---------DMVA 76
           ++ G+ +DSR+I     F AI+G + DG   I  A+  GA  ++  +          +V 
Sbjct: 24  YLTGLELDSRNINFGNLFIAIQGYNTDGRLHIDDAINNGAVAILSESYNKSTFFIKKIVN 83

Query: 77  SIGSLSIPVFGVDDVLGALNKL--AVAARLRSKAT----IIAITGSVGKTTTKEMLTIAL 130
           ++  + I  F        LNK    +A R     +    +I +TG+ GKTT   +LT   
Sbjct: 84  NVEVIPIIYF------NQLNKCISNIAGRFYDHPSLCLKLIGVTGTNGKTTITHLLTNWT 137

Query: 131 SSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIR 176
           S + +  A +G+  N +   +               + +  V        + +S  G  +
Sbjct: 138 SLLGERSAVMGTLGNGVLSDINPSCCTTCSAIETQKILKQFVQSGVTFVAMEISSHGLDQ 197

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELL 235
           +    +   +A+ + I+  HL   + I +   AK  +F  L +     +N DD   +  L
Sbjct: 198 YRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLFNEL-RVKNYVINVDDCVGYRWL 256

Query: 236 KAKSHALGIKTIYSFGKSKN--------ADFQLRKWKQCSEQSW 271
            + S+A+ +    +  +S +        AD+ L   K   + SW
Sbjct: 257 LSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIVFKSSW 300


>gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20]
          Length = 528

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 152/416 (36%), Gaps = 44/416 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVF 86
           G+S+DS   A  E F  + G    G  F   AV  GA  V+ + D   +    +   PV 
Sbjct: 49  GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHETAPGTPVL 108

Query: 87  GVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             DD   V+G L+        R   T  A+TG+ GKTTT   L   LS+        G+ 
Sbjct: 109 VHDDPRAVVGPLSAEVYHHPARGLVT-TAVTGTNGKTTTAYFLDAILSAHVGGCMVAGTV 167

Query: 144 NNHIG-----VPLTLARMP---------VDVDFGIFEL-GMSHLGEIRFLTHLVRPHIAV 188
              +G      P T    P         V+   G   L   SH   +  L  LV   +A 
Sbjct: 168 ELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGLVV-DVAG 226

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AKA++F   E      +  DD +   L A++  + I  + 
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKAQLFT-PEHARRGVVCVDDQWGAALAAEA-PIEIDRVR 284

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSI 305
           ++     AD+ +         S     L G   E +       G    QN  + L +   
Sbjct: 285 AYPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIR 344

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 TA  AL+  H   GR +R      +    ++D  +   P +M+ A+  +  I+P
Sbjct: 345 AGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPEAMELALKAVRPITP 402

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              GR I V G     G+  Q     L EV +             VL + D  PRS
Sbjct: 403 ---GRLIVVFG---SDGDRDQGKRPMLGEVCARL---------ADVLVVTDENPRS 443


>gi|238893071|ref|YP_002917805.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044865|ref|ZP_06017908.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545387|dbj|BAH61738.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259037834|gb|EEW39062.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSDDADVRVEDYRQVGAQGHFRLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K+ ++V  +  G H A N    + + +    D    ++AL  F   +G G+R+
Sbjct: 277 QDKAILQVTLNAPGRHNALNAAAAVAVATEEGIDDRAILRALESF---QGTGRRF 328


>gi|254468605|ref|ZP_05082011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
           proteobacterium KB13]
 gi|207087415|gb|EDZ64698.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
           proteobacterium KB13]
          Length = 444

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 35/262 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
           R K  +I ITG+ GKTT   +L   LS        +G    +IG+P L +       D+ 
Sbjct: 104 RKKTKLIGITGTNGKTTFCSLLASILSFNDLKSIAVG----NIGIPILNILTTQNKFDYI 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEK 219
           + EL      +I  L  +      VI  I P HL  +    +  +AK ++       L  
Sbjct: 160 VVELSSY---QIEVLDKMTVFDYGVILNIEPDHLDRYDSFIDYKNAKLKLANHSKTILHD 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +  +N   + F +     H   IKT +   K +N  +++       +  +++      
Sbjct: 217 KESAVVNDHANAFPIDPKDFHIEEIKTDFFTFKKQNKIYRI-------DTPYLK------ 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N++  L ++ I+  ++    K  + F  ++G   R+        +
Sbjct: 264 ---------GVHNVKNIMYLLKLLEIMNCNISFE-KVRNFFRNQKGIPHRFEYLSIDNNY 313

Query: 340 TLIDESYNANPASMKAAISVLS 361
             I++S   N AS K+A++ L+
Sbjct: 314 IFINDSKATNLASTKSALNSLN 335


>gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM
           43827]
 gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 25/192 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNN-----HIGVPLTLARMPVDVDF 162
           +  + G+ GKT+T  MLT+AL   +   ++A  G  N      H G              
Sbjct: 111 VACVAGTHGKTSTTSMLTVALQHCRMDPSFAIGGDLNESGANAHQGA------------G 158

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G+F +  +   +  FL     P +AV+T +   HL +   +E   +   E  E +E  G 
Sbjct: 159 GVF-VAEADESDGSFL--FFAPSVAVVTNVEADHLDHHGTVEAYVAVFDEFLERIEPGGV 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKS 280
           +    DD     L  ++   GI+ +  +G++   +    L + +         V+L G+ 
Sbjct: 216 LIACADDEGSAALADRAEKRGIR-VRRYGRAATGEGAAVLVEHRPDGAGGLAVVELDGER 274

Query: 281 MEVVHHGIGYHM 292
           ++V     G HM
Sbjct: 275 LDVRVAVPGEHM 286


>gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR    Q  FFA KG  +   DF+  A+ KG  L V   D       + IPV  
Sbjct: 36  DSLSYDSRQADEQTLFFA-KGSAFKA-DFLRQAIAKGLRLYVSEIDY-----QVGIPVIL 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V+++  A++  A+A     ++K  ++A TG+ GKTT
Sbjct: 89  VNNIKHAMSLAAMAFYDYPQNKLKLLAFTGTKGKTT 124


>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
 gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 19/232 (8%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG    +IGV +      
Sbjct: 88  LELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIG----NIGVGMLWEIYN 143

Query: 158 VDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            D D + + E     L      T   +P  + I  I P H+     ++   +AK  + + 
Sbjct: 144 SDKDTYFVIECSSFQLES----TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKN 199

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEV 274
            ++     LN DD ++E  K  + A     +Y    SKN      ++        S  + 
Sbjct: 200 QDENCYTVLNADDEYYEECKKFTKA----NVYDISTSKNVKRGSFIKDNSIYFSDSDCDK 255

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +  K +++    IGYH  QN+L  + +  ++  + D+  + L  F   E R
Sbjct: 256 IIDLKDVKL----IGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHR 303


>gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 487

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 24/225 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR    +  F A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 23  IESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFED----QKRVF 78

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPH-------------IAVIT 190
            I   L   R        I  L   +S+    + L   V  H             +A+ +
Sbjct: 139 GIYPDL---RESTHTTLDILSLYKTISYYKNYQNLVMEVSSHSLDQKRVEGLDFDVAIFS 195

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            ++  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 196 NLSHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 239


>gi|302380068|ref|ZP_07268545.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312141|gb|EFK94145.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 147/375 (39%), Gaps = 46/375 (12%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           + A +R+    I ++GS GK+TT  M+   L   +         +  I +   L  +  +
Sbjct: 104 LGALMRNYKYSIGVSGSHGKSTTTSMIAKILIDAR--------VDPSILLGGKLDEIQGN 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V  G  E  ++   E +       P +A+I  I   HL  +  +  I +      + L++
Sbjct: 156 VHCGNSEYMLTEACEYKANILNYYPSMAIILNIDEDHLDFYKDLNHIVATFIGYMKNLDE 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--WKQCSEQSW-MEVQ 275
                +N DD   E L   SH  G   I +FG +++ AD+ +    + +    S+ +  +
Sbjct: 216 NSKAIINIDDKNCEPL--LSHIKG--EIITFGIENEKADYNVHDITFNENGNPSFVVSSE 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              K  E     IG H   + +  +        D+DT  K +  +H        +R    
Sbjct: 272 KFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYH------NLHRRMET 325

Query: 336 QGFF--TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGEL 384
            GF+    +   Y  +P  +K  +  L +           PH   R   +L D       
Sbjct: 326 IGFYKGCEVKTDYGHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDD------F 379

Query: 385 SQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSL 441
           + SF+ D  EV+   +Y     + S  H   L + L ++ ++  Y +T +    +I+S +
Sbjct: 380 ANSFY-DCDEVIVTEIYAAREKFDSSIHSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKV 438

Query: 442 VDGDVVVVKSSNSCG 456
            + D+V+   +  CG
Sbjct: 439 CENDMVL---TTGCG 450


>gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
 gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
          Length = 519

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 44/242 (18%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88
           D+RS+   +AFFA      D   FI  A+++GA  V+V  +     + +   L++P    
Sbjct: 34  DTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAAVLVQPEGFSGALDASSMLAVPR--- 90

Query: 89  DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                 LN+LA  +A+      +     + +TG+ GKT+  + ++ AL+++    A IG+
Sbjct: 91  ------LNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184
                     H G      P     +    D G   + M       H G +         
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAF---- 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHAL 242
            IAV T +   HL      E   +AKA +F   E    + +N DD+    L A  + HA 
Sbjct: 201 DIAVFTNLTQDHLDYHRTFEAYEAAKARLFAWPELRAAV-INRDDAVGRRLLASTRGHAR 259

Query: 243 GI 244
            I
Sbjct: 260 TI 261


>gi|152968676|ref|YP_001333785.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330012006|ref|ZP_08307223.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
 gi|166224697|sp|A6T4N4|MURC_KLEP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150953525|gb|ABR75555.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328533995|gb|EGF60647.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSDDADVRVEDYRQVGAQGHFRLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K+ ++V  +  G H A N    + + +    D    ++AL  F   +G G+R+
Sbjct: 277 QDKAILQVTLNAPGRHNALNAAAAVAVATEEGIDDRAILRALESF---QGTGRRF 328


>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 28/106 (26%)

Query: 106 SKATIIAITGSVGKTTTKEM---------LTIALS-SIKKTYACIGSYNNHIGVPLTLAR 155
           + A  I ITGS GKTTT  +         L + L+ +I K++A   S + H         
Sbjct: 99  TNAKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIGKSFAWQVSEDTH--------- 149

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                DF + EL    L  I+      +PHIA+IT I+P HL  + 
Sbjct: 150 -----DFYVLELSSFQLDGIQ----KYKPHIAIITNISPDHLDRYD 186


>gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
 gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
          Length = 488

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 21/224 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           +N + +DSR++   + F  + G   DG  F   AV  GA +V++ ++       +    +
Sbjct: 17  LNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQDQARIEWHDN 76

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V  +   L+ LA A       K T++ +TG+ GKTT   +LT     + K  A +
Sbjct: 77  IPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWTHLLGKKSAVM 136

Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHI 186
           G+  N     +          V++   + E          + +S  G ++     ++   
Sbjct: 137 GTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQHRVDALQFAA 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           AV T ++  HL     ++  A AK  +F G      I +N DD 
Sbjct: 197 AVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNRI-INADDE 239


>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 2   HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 61

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 62  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 116

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 117 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 176 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 232 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKL 287

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 288 IGKFNVYNVL 297


>gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 24/225 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR    +  F A+KG   DG+ +I   + KG  LV+ ++            VF
Sbjct: 28  IESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFED----QKRVF 83

Query: 87  GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA       K   II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 84  YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 143

Query: 146 HIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPH-------------IAVIT 190
            I   L   R        I  L   +S+    + L   V  H             +A+ +
Sbjct: 144 GIYPDL---RESTHTTLDILSLYKTISYYKNYQNLVMEVSSHSLDQKRVEGLDFDVAIFS 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            ++  HL     ++    AKA++F+  ++     +N DD + + L
Sbjct: 201 NLSHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 244


>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
 gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
          Length = 460

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  ++++  AA+  S ATI+ ITGS GKTTT    T+ +  I K          +IGV  
Sbjct: 103 ISVISEIEFAAKYTS-ATIVGITGSNGKTTT----TMLVHRILKDAGLNVGLAGNIGVSF 157

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAK 210
                 V  +  + EL    L  I   +     HIA++T I P HL  +    E+  ++K
Sbjct: 158 AQQVAEVSHENYVVELSSFQLDGIEKFS----SHIAILTNITPDHLDRYEYDFEKYVASK 213

Query: 211 AEIFEGLEKTGTIFLNYDD 229
             I +  +++  +  + DD
Sbjct: 214 FRITQNQKESDYLIYDADD 232


>gi|154245140|ref|YP_001416098.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthobacter autotrophicus
           Py2]
 gi|229620439|sp|A7IEJ8|MURC_XANP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154159225|gb|ABS66441.1| UDP-N-acetylmuramate--alanine ligase [Xanthobacter autotrophicus
           Py2]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 36/299 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    ++I G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 100 LAELMRLKS---CVSIAGTHGKTTTTSMVAALLDAGNFDPTVINGGIINAYG---TNARL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D ++ + E   S    ++  T      +A++T + P HL +F   +++  A     E 
Sbjct: 154 G-DGNWMVVEADESDGTFLKLPTE-----VAIVTNVDPEHLDHFKTFDKVQDAFKTFVEN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + L  +   +  + + ++G++  AD +L         +   V  
Sbjct: 208 VPFYGFAVMCIDHPVVQALVGR---IEDRRVITYGENPQADVRLVDVDLKGGITRFGVVF 264

Query: 277 QGKSMEVVHH--GI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + ++ E VH   G+     G H A N    + +   L    D  I+A++ F    G  +R
Sbjct: 265 RNRAGETVHEISGLKLPMPGKHNALNATAAIAVAHELKVPDDKIIEAIANFG---GVKRR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379
           +         T+ D+ Y  +P  + A +          V++ + PH   R  ++  + C
Sbjct: 322 FTRTGEWNGVTVFDD-YGHHPVEIAAVLKAARAASEGQVIAVVQPHRYSRLASLFDEFC 379


>gi|307824829|ref|ZP_07655052.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
 gi|307734187|gb|EFO05041.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
          Length = 479

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A I+AI+GS GK+T   ML       K T   +G   N +G P  L  + ++    + EL
Sbjct: 133 APIVAISGSNGKSTVTTMLG---EMAKATGMKVGVGGN-LGTP-ALDLLALNAQLYVLEL 187

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L     L  +     A +  ++  HL     + E A  K  +F G    G + +N 
Sbjct: 188 SSFQLERTSALNAVA----ATVLNVSADHLDRHVDMAEYAREKQRVFRG---DGVMVINA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           DD     ++        + +++F  +K ADF L
Sbjct: 241 DDPVVYAMRDDG-----RKVFTFSINKKADFYL 268


>gi|285019573|ref|YP_003377284.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas albilineans GPE
           PC73]
 gi|283474791|emb|CBA17290.1| probable udp-n-acetylmuramate-l-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 31/229 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +    LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLTAAVLSEGGMDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I+VIT I   HL N+ +    I +A AE  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLISVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLAVLCI 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVV 284
           DD     L A++     + + S+G S+NAD  +R      E S M   L   +G S  V 
Sbjct: 228 DDPEVAALAAQTP----RHVMSYGLSENAD--VRAEDVVQEGSRMHFTLRMPEGSSTAVT 281

Query: 285 HHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRY 330
               G H   N L    I   + +  A + +A+++ +      G G+R+
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVTPAAIASALQSFA------GIGRRF 324


>gi|262373951|ref|ZP_06067228.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
 gi|262310962|gb|EEY92049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
          Length = 452

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 141/370 (38%), Gaps = 52/370 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  + A IIAITGS  K+T   ++ +      K  A  G+          L R  +D+  
Sbjct: 100 RRATDAPIIAITGSNAKSTVTTLVGLMAQDAGKKVAVGGN----------LGRPALDLLK 149

Query: 163 GIFELGMSHLGEIRFLT--HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              EL +  L   +  T  HL    +AV+  ++  HL     +     AK  IF+G++K 
Sbjct: 150 DKPELIVLELSSFQLETTSHL-NAEVAVVLNMSEDHLDRHGDMLGYHKAKHRIFQGVKK- 207

Query: 221 GTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQL---RKWKQCSEQSWM 272
             +  N DD+    L       +S  L    +  +G  ++AD  +   R  ++  + S M
Sbjct: 208 --VVYNRDDNLSRPLVPDATPMQSFGLNAPDLNQYGVLRDADGTMWLARGRERILKTSEM 265

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +Q             G H   N L  L I   +   + + ++ L  F     +G  +RC
Sbjct: 266 YIQ-------------GMHNVANALACLAIGEAVGFPLPSMLETLKTF-----KGLEHRC 307

Query: 333 ALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              Q        ++S   N  +  AAI  L       +G+   +LG   +     Q F  
Sbjct: 308 EYVQTIDGVRYYNDSKGTNVGATLAAIDGLGAAIEVNKGKLALILGGQGK----GQDFR- 362

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            L   +  Y +  V L G     ++ A+  +  + ++ ++       Q      DVV++ 
Sbjct: 363 PLRNAIQKY-VKSVILIGEDAPVIEQAIQGTTVIQHASSLKAAVELAQQVTQAEDVVLL- 420

Query: 451 SSNSCGFYRL 460
            S +C  + +
Sbjct: 421 -SPACASFDM 429


>gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 483

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR +     FFA KG  +   +++  A+QKG    V   D       L IP   V 
Sbjct: 39  ISFDSRDVDSSTLFFA-KGATF-KKEYLEQAIQKGLPFYVSQVDY-----ELDIPAIIVT 91

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+        K  IIA TG+ GKTT
Sbjct: 92  DIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTT 125


>gi|240948408|ref|ZP_04752786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
 gi|240297234|gb|EER47792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
          Length = 434

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T   + T+     K+    +G   N IGVP  L+ +  D +  +
Sbjct: 103 EAKAPIIAITGANGKST---VTTLTTEMAKQAGIKVGMGGN-IGVP-ALSLLKSDYELYV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L      T+ ++   A I  I+  H+  ++  +EE  +AK  I++  E    I
Sbjct: 158 LELSSFQLE----TTYSLKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAE---NI 210

Query: 224 FLNYDDSF 231
            +N +D  
Sbjct: 211 IVNGEDPL 218


>gi|229047597|ref|ZP_04193187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
 gi|228723844|gb|EEL75199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K +N D        C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKILFSTTK-ENED------GACIKDNALYFKGE-KVIEVS 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens
           DSM 2638]
 gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM
           2638]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 116/299 (38%), Gaps = 35/299 (11%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           LA   RLR   T IA+ G+ GKTTT  +L TI   +       IG   N  G    L   
Sbjct: 98  LAELMRLR---TGIAVAGTHGKTTTTSLLATIFTEAELDPTVIIGGRLNTFGSNARLGD- 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                 G F +  +   +  FL   + P I V+T +   HL  + G E I  +  +    
Sbjct: 154 ------GQFLIAEADESDGSFLC--LAPIITVVTNVDKDHLDFYGGQEAIDESFRKFMNS 205

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQ 275
           +   G   +  DD   + L         +   ++G +K    +LR +   C  +S  +V 
Sbjct: 206 IPFYGMNVVCGDDPGVQRLLPSIK----RPCMTYGLNKGN--RLRGEILSCEVRSLFKVY 259

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           L  K + EV     G H   N L  +G+      D    +  LS F    G G+R+    
Sbjct: 260 LDEKLLGEVSLAQPGKHNVLNALGAIGVSLEAGLDPKVILSGLSNFM---GVGRRFEKKG 316

Query: 335 NQGFFTLIDESYNANPASMKAAI----SVLSQ------ISPHGEGRRIAVLGDMCEMGE 383
                 ++D+ Y  +PA ++A I    S   Q        PH   R  A+ G+ C+  E
Sbjct: 317 ESKGILVVDD-YGHHPAEIQATIETAKSCFPQRRLVVAFQPHRFTRTEALFGEFCKTFE 374


>gi|237734701|ref|ZP_04565182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mollicutes
           bacterium D7]
 gi|229382029|gb|EEO32120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coprobacillus
           sp. D7]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 48/204 (23%)

Query: 39  PQEAF-----FAIKGPHYDGHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           P E F     F IK P  + H  FIL   ++                   IPV+      
Sbjct: 60  PTELFERDFDFVIKNPGINYHKPFILRLKER------------------KIPVY------ 95

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
               ++ +A ++  K   I +TG+ GKTTT   +T+    +K  Y  +    N +G PL 
Sbjct: 96  ---TEIELAFQVAKKQHYIGVTGTNGKTTT---VTLIDKILKGQYQHVHLAGN-VGTPLC 148

Query: 153 LARMPVDV-----DFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              +  D+      + + E+    L +I RF     +P+++ I  + P HL   + ++E 
Sbjct: 149 DVVLDNDLLNEENHYVVIEMSNFQLLDIERF-----KPYVSTIINLTPDHLDYMASLDEY 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS 230
            ++K  I++  +      +N DD 
Sbjct: 204 YASKTNIYKNTDLDDYFVVNLDDK 227


>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
 gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 2   HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 61

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 62  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 116

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 117 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 176 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNS 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 232 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKL 287

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 288 IGKFNVYNVL 297


>gi|227529010|ref|ZP_03959059.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227351022|gb|EEJ41313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++++TGS GKTTT  +  +    I K+ A    Y  +IGV  +     V  + G  +  +
Sbjct: 114 LVSVTGSNGKTTTTTLTQLM---IAKSNAHRVEYAGNIGVSFS----KVAAELGPEDTLV 166

Query: 170 SHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           + L   + L   ++RPHIA+IT I   HL      E   +AK  I         + +N+D
Sbjct: 167 TELSSFQLLGAPIIRPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTSDDYLIMNWD 226

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNA 256
              ++ +  +S A    TI  F +   +
Sbjct: 227 RDEWQQIARRSQA----TIVPFSRQNKS 250


>gi|167036439|ref|YP_001664017.1| hypothetical protein Teth39_0008 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751448|ref|ZP_05492326.1| protein of unknown function DUF1727 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320114865|ref|YP_004185024.1| hypothetical protein Thebr_0008 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855273|gb|ABY93681.1| domain of unknown function DUF1727 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749667|gb|EEU62693.1| protein of unknown function DUF1727 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319927956|gb|ADV78641.1| domain of unknown function DUF1727 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 135/351 (38%), Gaps = 56/351 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMP-----VDV 160
           K   + ITG+ GKTTT  ++  I  +S K         N   G+  TL +       +  
Sbjct: 47  KDNKVIITGTNGKTTTSGLIAHILTTSGKSVVHNKEGANMKTGIATTLIKNSNFLGNLIK 106

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  +FE+  +++     +   ++P+I +IT      L  +  ++       +    L + 
Sbjct: 107 DAAVFEIDEANMP---IVIEDIKPNIVIITNFFRDQLDRYGELDTTVEKVKKALLKLPQE 163

Query: 221 GTIFLNYDDSFF----ELLKAKSHALGI--------------------------KTIY-- 248
             + LN D+ F     + +K+K    GI                          + IY  
Sbjct: 164 SIVLLNADEPFTASIGDEIKSKVFYYGIEDNIEGINSSSFEQKYCPICGHKYEYRRIYYG 223

Query: 249 --------SFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   + GK + N+ F+        +     +  + K   V    IG +   N+L  
Sbjct: 224 QLGDYYCPNCGKKRPNSHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLYNVYNLLAA 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +L  D +T +KA   + P EGR ++ +    +    LI      NP   ++ +++
Sbjct: 284 ISAGILLNIDFNTILKATESYWPIEGRLQKTKIKNKKAIINLI-----KNPIGFESTLNM 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           LSQ +       I++  +  +  ++S  + ++L + LS   ++++  SG  
Sbjct: 339 LSQFN-KPLNLLISINDNYADGRDVSWLWDVNLEDFLSKTKVNYIITSGLR 388


>gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Proteus mirabilis HI4320]
 gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate
          ligase [Proteus mirabilis ATCC 29906]
 gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Proteus mirabilis HI4320]
 gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate
          ligase [Proteus mirabilis ATCC 29906]
          Length = 495

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 18 SIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
          ++GI  P   +  +++DSR  A  + F AIKG   DG  +I  A+ +G   V+   + +A
Sbjct: 12 ALGIQAPSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGVCAVLAEAEGIA 71

Query: 77 SIGSL----SIPVFGVDDVLGALNKLA 99
          + G +     IPV  ++++   L+KLA
Sbjct: 72 THGEIRESHGIPVIYIENLNCQLSKLA 98


>gi|293610569|ref|ZP_06692869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826913|gb|EFF85278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 34/297 (11%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L           F + 
Sbjct: 125 IAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALGE-------SRFIVA 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 177 EADESDASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   QS   V  +G+  + +  +
Sbjct: 235 DDANIREILPR---VG-RPVITYGFNEDNDIRAVDIEQDGMQSHFTVLRKGREPLRLTIN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--- 343
             G H   N L  +G+ +      D   +AL  F    G G+R++    QG F L D   
Sbjct: 291 QPGLHNVLNALAAIGVATDEGVSDDAISRALEGF---SGVGRRFQV---QGEFELADGNV 344

Query: 344 ---ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS
Sbjct: 345 KLVDDYGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLS 397


>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
 gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 148/388 (38%), Gaps = 51/388 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H LL  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLLSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++     LN DD+   E +++ +      T+ ++G    +D   +     S  +   +  
Sbjct: 231 DREKYAVLNNDDAVTPEYMRSTA-----ATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVT 285

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +S+ V    IG     N+L       +    ++T I  +       GR +       Q
Sbjct: 286 PYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVDGG--Q 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS 364
            +  ++D  Y   P S++  +    Q +
Sbjct: 344 NYTVIVD--YAHTPDSLENVLKTAKQFA 369


>gi|103487364|ref|YP_616925.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingopyxis alaskensis
           RB2256]
 gi|123253129|sp|Q1GRY0|MURC_SPHAL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|98977441|gb|ABF53592.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingopyxis alaskensis
           RB2256]
          Length = 477

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 143/339 (42%), Gaps = 43/339 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           +R K+T+ AI G+ GKTTT  ++   L +  I  T    G  NN+     + AR+    D
Sbjct: 105 MRLKSTV-AIAGTHGKTTTTSLVAALLDAGGIDPTVINGGIINNY----GSNARLGAS-D 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    +R         IAV+T I P HL ++   + I  A  E  E +   G
Sbjct: 159 WMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDAIKDAFVEFIENVPFYG 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---- 277
              L  D      ++A    +  + I ++G S  AD +        + +  +V ++    
Sbjct: 214 AAMLCLD---HPEVQAIIPRIRDRRIITYGFSAQADVRGTNVTPGPDGNRFDVVVRDRDG 270

Query: 278 -GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331
             +++E +H  + G H  QN L  + +   +    +   K +S F+   G  +R+     
Sbjct: 271 NSRTIEGIHLPMSGRHNVQNALAAVAVALHMGVPDE---KIVSGFNGFAGVKRRFTKVGE 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD------MCEMGELS 385
              ++G  T+ID+ Y  +P  ++A +S   + +  G GR +AV+           M +  
Sbjct: 328 IVTDEGVVTVIDD-YAHHPVEIRAVLSAAREGA--GAGRVVAVVQPHRFTRLRDHMDDFQ 384

Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           Q+F+  D+   L +Y      + G       DAL R + 
Sbjct: 385 QAFNDADMVLALPVYAAGESPIEGVS----SDALVRGLR 419


>gi|260752700|ref|YP_003225593.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552063|gb|ACV75009.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 33/208 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ ITG+ GK+TT    T  +  I K          +IG+PL LA  P+  D G++ L +
Sbjct: 124 VVGITGTNGKSTT----TALIHHILKEAGLPTLMGGNIGLPL-LAADPLP-DGGVYVLEL 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +I  LT  +   IAV+T I P HL    G E    AK  +F          +  DD
Sbjct: 178 SSY-QID-LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +++ AK  A  +  +++   S              + +W  +Q             G
Sbjct: 236 IPSQVI-AKQSAAHLVAVHADNISAE-----------DQVNWPNLQ-------------G 270

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKAL 317
            H AQN ++ + +  IL    D   KAL
Sbjct: 271 PHNAQNTVLAMAVAHILGISDDVISKAL 298


>gi|331671607|ref|ZP_08372405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
 gi|331071452|gb|EGI42809.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---ICV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLYLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           venezuelae ATCC 10712]
          Length = 474

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 100 VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           +A RLR    A  +A+TG+ GKTTT  ML   L +     A +G    +IGV L  A + 
Sbjct: 104 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVG----NIGVSLLDAVLG 159

Query: 158 VDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +  D    EL    L         VR H A +  +AP HL     +E  A+ K  I++G
Sbjct: 160 EETYDVLAVELSSYQL----HWAPSVRVHSAAVLNLAPDHLDWHGSMEAYAADKGRIYQG 215


>gi|256784420|ref|ZP_05522851.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces lividans TK24]
 gi|289768299|ref|ZP_06527677.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
 gi|289698498|gb|EFD65927.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
          Length = 462

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 26/214 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++V +   L IPV    D L AL        LR     IA+ G+ GKTTT  ML ++L
Sbjct: 83  NPELVRA-AELGIPVVHRSDALAALMN-----GLRP----IAVAGTHGKTTTTSMLAVSL 132

Query: 131 SSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           S +    +YA  G  +     P + A        G  E+ ++   E     H   P +A+
Sbjct: 133 SELDLGPSYAIGGDLD----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAI 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +  +   H +N++ ++EI  +  E F G +   GT+ +  D      L  +  A  ++T+
Sbjct: 183 VLNVELDHHANYASMDEIYESF-ETFAGKIVPGGTLVIAADHEGARELT-RRLAGRVRTV 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            ++G+S++AD ++        +S + V L G  +
Sbjct: 241 -TYGESEDADVRILSVVPQGLKSEVTVVLDGAEL 273


>gi|254419677|ref|ZP_05033401.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
 gi|196185854|gb|EDX80830.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 27/279 (9%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++T I P HL ++   + +  A  +  E +   G   +  D    + L A   ++  +
Sbjct: 183 VAIVTNIDPEHLDHYGDFDAVRKAFVDFVENIPFYGFAAVCLDHPEVQKLVA---SIDNR 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGI-GYHMAQNMLMTLG 301
            + ++G +  A  +    +   + +  +V +Q      +E +H  + G+H   N L  + 
Sbjct: 240 RLVTYGINPQAMVRADNCQMGPDGARFDVVIQNGETYRIENLHLPMAGWHNVSNALAAIA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +   + L+ F    G  +R+          ++D+ Y  +P  + A +    
Sbjct: 300 VARELDVSDEAIREGLAGFG---GVKRRFTTTGVVNGVRIVDD-YGHHPVEIVAVLKAAR 355

Query: 362 QISPHGEGRRIAV--------LGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVL 412
           Q++   EGR IAV        L D+  M E S +F   D   V  +Y      + G    
Sbjct: 356 QVT---EGRVIAVVQPHRYTRLRDL--MNEFSTAFSDADSVIVADVYPAGEPPIEGVDKH 410

Query: 413 ALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVV 449
           AL D + R  H H     +   L   I+     GDVVV+
Sbjct: 411 ALTDGIRRYGHRHVQALENAAVLPRLIKEEARPGDVVVL 449


>gi|238021216|ref|ZP_04601642.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
 gi|237868196|gb|EEP69202.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
          Length = 472

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 152/383 (39%), Gaps = 51/383 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R R     IAI G+ GKTTT  +    L +       I      IG  LT A   
Sbjct: 98  LAEIMRFRES---IAIAGTHGKTTTTSLTASILGAAGLDPTFI------IGGKLTAAGTN 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
             +  G + +  +   +  FL   + P   VIT I   H+  ++   +++  A  +    
Sbjct: 149 AKLGKGTWMVAEADESDASFL--YLSPVFTVITNIDEDHMDTYNHDADKLRQAFIDFVHR 206

Query: 217 LEKTGTIFLNYDDSFFELLKAK------SHALGIKTI---YSFGKSKNADFQLRKWKQCS 267
           +   G  FL  D +    +  K      ++A+  +T     S  ++ +A  Q    ++ +
Sbjct: 207 MPFYGKAFLCIDSANVRAILPKIQKPFATYAIDDETADLWASNVRTHDAQMQFTVNRKHA 266

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + S        ++ +V  +  G H   N L ++G+     A V+   + L+ F    G G
Sbjct: 267 DNSV-------QTFDVTLNCAGRHNVLNALASIGVALECKAPVEAIQQGLATF---GGVG 316

Query: 328 KRYRC----ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +R++      L QG   L+ + Y  +P  M+A +S      P+       VL        
Sbjct: 317 RRFQSYGEINLPQGGKALVIDDYGHHPVEMQATLSAARGAFPNNR----LVLAFQPHRYT 372

Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDG 432
            ++    D   +L+  +   ++ V+ +G   +   D  AL R++ VH      Y   ++ 
Sbjct: 373 RTRDLFEDFVTILNSVDALVLTDVYAAGEEPIVAADSRALTRAVRVHGKLEPIYCADVNA 432

Query: 433 L-FLFIQSSLVDGDVVVVKSSNS 454
           +    + + L DGDVV+   + S
Sbjct: 433 VPETLLHNVLQDGDVVLTMGAGS 455


>gi|325496024|gb|EGC93883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ECD227]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HIDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
 gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GKTTT  +++  + +  +     G    +IG  L    +P   D     + +
Sbjct: 119 IIAVTGSDGKTTTTTLISKMMEAAGRKVFLGG----NIGAAL----LPQLADVTPEAVAV 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             L   + ++    P +AV+T + P HL +   ++E   AK  I 
Sbjct: 171 VELSSFQLISMRRSPKVAVVTNVTPNHLDHHKDMQEYIDAKRNIL 215


>gi|18310900|ref|NP_562834.1| FolC bifunctional protein [Clostridium perfringens str. 13]
 gi|18145582|dbj|BAB81624.1| folyl-polyglutamate synthetase [Clostridium perfringens str. 13]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 16/145 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T++V P + V+T+I+  H++   + IEEIA  K     G+ 
Sbjct: 136 VDYAVLEVG---LGGRLDATNVVLPEVVVLTSISLDHMNILGNTIEEIAKEKC----GII 188

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           K+G   ++Y  ++   E++K + + LG    + +    KN      K  Q      +EV 
Sbjct: 189 KSGVPVISYPQEEKALEVIKERCNELGCNLEVVNTEDIKNIIIDKEKHVQ-----KIEVS 243

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTL 300
           L+ + +E+    +G H  +N L+ L
Sbjct: 244 LEDEILEIDLGLLGDHQVKNFLVAL 268


>gi|326692717|ref|ZP_08229722.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc argentinum KCTC
           3773]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 31/266 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++ T IA+ G+ GKT+T  +L   L +I  T   IG      GVP        +  F + 
Sbjct: 102 AQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGR-GVP--------NSQFFVV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   +  I ++ +A ++    ++K   IF 
Sbjct: 153 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYHDINDVTAAFSDFAGNVKK--AIFA 205

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             DD     L+  +       +Y +G + +  DF     ++ ++ S  EV  +G+S+ E 
Sbjct: 206 WGDDPHLRSLQPAA------DVYYYGTNTDRDDFVATNIRKSTQGSHFEVLFRGESLGEF 259

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342
                G H   N +  + +  +   D++   + L  +     +G + R +  Q    T+I
Sbjct: 260 AVPLFGQHSILNAVAVIAVAYMEKVDLNLIREFLMTY-----QGVKRRFSEKQIADITVI 314

Query: 343 DESYNANPASMKAAISVLSQISPHGE 368
           D+ Y  +P  + A +    Q  P+ +
Sbjct: 315 DD-YAHHPTEIDATLDAARQKYPNKQ 339


>gi|293417964|ref|ZP_06660586.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
 gi|291430682|gb|EFF03680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKIS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    +   D 
Sbjct: 23  QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYIAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|94676482|ref|YP_588948.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|166222957|sp|Q1LSW6|MURC_BAUCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94219632|gb|ABF13791.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 490

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 169/423 (39%), Gaps = 68/423 (16%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           + + + N ++VA+   L IP+    ++L  L +             IAI G+ GKTTT  
Sbjct: 86  SAISIANPEIVAA-KKLRIPIITRAEMLAELMRFRYG---------IAIAGTHGKTTTTA 135

Query: 125 ML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ML +I L +        G     IG     AR+     +G + +  +   ++ FL HL +
Sbjct: 136 MLASIYLEAGLDPTIVNGGLIKSIG---QYARL----GYGSYLIAEADESDLSFL-HL-Q 186

Query: 184 PHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHA 241
           P + +IT I   H+ N+ G    + +   +    L   G   +  DD    +LL   S  
Sbjct: 187 PIVTIITNIEADHMENYQGDFNYLKNTFLKFIHKLPFYGKGIMCLDDPVIRDLLPHIS-- 244

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
              + I ++G +  A+F+L  + Q       ++  Q K ++ +  +  G H A N +  +
Sbjct: 245 ---RHIITYGFNSKANFRLTNYHQKEAHVSFQLYRQDKPTLRIELNSPGRHNALNAVAAI 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALN--QGFFTLIDESYNANPASMK 354
            + +         ++AL  F     R  +  C     +N   G   L+ E Y  +P  ++
Sbjct: 302 AVATEEGIADKNILQALFRFKGINRRFDKLGCFSLKKINGKNGVVMLV-EDYGHHPTELQ 360

Query: 355 AAIS----------VLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNIS 402
           A I           ++    PH    R     D+ E  +G LS+   +D+  +L +Y   
Sbjct: 361 ATIQSVRIGWPDKRLVMVFQPH----RYTRTRDLYEYFVGVLSK---VDVLLMLDIYPAG 413

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNS 454
              ++G       D+      +  +  +D +F+         +   L D D+V+++ + S
Sbjct: 414 ENPIAGI------DSKSLCCTIRNTSKLDPIFIHELNKLPVMLAQLLQDNDLVLMQGAGS 467

Query: 455 CGF 457
            G 
Sbjct: 468 IGL 470


>gi|84501752|ref|ZP_00999924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390373|gb|EAQ02932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           batsensis HTCC2597]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  I+A+TGS GK+TT  ++   L S+ +     G    +IG  +     P D    + E
Sbjct: 127 QPRIVAVTGSNGKSTTSALIHHVLESVGRDTQLAG----NIGRGVLDIDPPGDGGVVVLE 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           L        R LT    P +AV T + P HL    G+    +AK  +F
Sbjct: 183 LSSYQTDLARALT----PDVAVFTNLTPDHLDRHGGLGGYFAAKRRLF 226


>gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 165/404 (40%), Gaps = 50/404 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR++ P + F A+ G   DG   I  A+ +GA  V         +    +P+
Sbjct: 17  MIRELTLDSRNVRPGDLFLAVPGAKVDGRGHIADALARGAAAVAYEEQGANVLPLTDVPL 76

Query: 86  FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V  ++  L+   +A R   + +    ++ +TG+ GKT+  ++L  AL  + K    IG
Sbjct: 77  IPVKGLIAQLSD--IAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQALELLGKRCGLIG 134

Query: 142 SYNNHIGVPLTLARM----PVDVD---FGIFELGM--------SHLGEIRFLTHLVRPHI 186
           +        L   R+    P+ V    +G+ + G         SH  E   +  L    I
Sbjct: 135 TLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHALEQGRVAALAF-DI 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KAKSH 240
           AV+T ++  HL     ++   +AKA++F          +N DD F   L      +A + 
Sbjct: 194 AVMTNLSRDHLDYHGSMQAYEAAKAKLF-AWPSLRCQVVNLDDEFGRRLAQAFADRAPAD 252

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMA 293
            +  + +    ++++AD        C++ ++ +       V  QG+ + +    +G    
Sbjct: 253 PIESRLLSYSLENRDADL------FCTKAAFDDHGVRATLVTAQGERI-LRSQLLGRFNL 305

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            NML  +  +  +   +D  +  +       GR +R    L  G   L+   Y   P ++
Sbjct: 306 SNMLAAVATLLAMDFALDEILSVIPKLQGPVGRMQR----LGGGAKPLVVVDYAHTPDAL 361

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +    VL  + PH  G+ + + G   +     +    ++AE L+
Sbjct: 362 E---KVLEALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLA 402


>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
 gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 157/400 (39%), Gaps = 73/400 (18%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           F+N    DSR +    AF  I G   DGHDF+    QKGA  V+V  ++ A      + V
Sbjct: 26  FIN----DSRKVEKGSAFVCISGAVVDGHDFVEEVAQKGAAAVIVEREVEA---PEDMTV 78

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D   AL  ++ A       K  II ITG+ GKTTT  M+   L  +      IG+ 
Sbjct: 79  IRVADSRYALALMSAAYFGYPADKMKIIGITGTKGKTTTTYMIKSILEGVGHKVGLIGTI 138

Query: 144 NNHIG---VPLT------------LARM-PVDVDFGIFELGMSHLG---------EIRFL 178
              IG   +P               ARM     D  + E+    L          EI   
Sbjct: 139 EAIIGDEKIPAANTTPESYTIHQYFARMVEAGCDSVVMEVSSQGLMLHRTAGIPFEIGIF 198

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T+L R H      I P    +F   E+    K  +F+   + G    N DD +FE + ++
Sbjct: 199 TNLGRDH------IGPNEHKDF---EDYKRCKGLLFQQC-RLG--IANVDDEYFEDVFSR 246

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQN 295
           +       + +FG S+ AD +       S   ++ V      +   +V     G     N
Sbjct: 247 ATC----RVETFGFSEKADLRAVDTHLVSRPGYLGVAYHVSGLMDFDVEIDIPGKFSVYN 302

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +       V+   KAL V + K   G+     ++  F  +ID ++NA   S+++
Sbjct: 303 SLTAIAVCRHFQVPVEQIKKALKVANVK---GRIEMIPVSDEFTLMIDYAHNA--MSLES 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMC----------EMGELS 385
            ++ L +  P    R + + G  C          EMGE+S
Sbjct: 358 LLTTLKEYEP---ARLVCLFG--CGGNRSRERRYEMGEVS 392


>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR]
 gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
          Length = 495

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 163/399 (40%), Gaps = 44/399 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ I G  +       + G++ DSR + P  AF  I+G   DGH F  +AV+ 
Sbjct: 1   MRRLTDLLKNIYGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           GA +++    +        +    V+D   AL  +  A       K  II +TG+ GKTT
Sbjct: 61  GATVIIAEKPVTVPSSVTVVT---VEDTREALAYMGAAFYDYPGDKLNIIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---GVPLT------------LARMPVD--VDFGI 164
           T  ++   L    K    IG+  N I    +P+T            LA M VD  VD+ +
Sbjct: 118 TTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEM-VDAGVDYAV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI- 223
            E+  SH  E+  +        A+ T I   HL     ++   +AK ++F  L K     
Sbjct: 177 MEVS-SHALELNRVAGCEYDQ-AIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKS 234

Query: 224 -----FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQ 277
                 +N DDS  +     +H      + ++G    AD +  K    S+  S+  V  +
Sbjct: 235 RNKYGIINIDDSKGQSFLEVTHG----QVITYGIQSAADVRAEKIDLRSDGVSFTAVTPR 290

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G S+++  +  G     N L    + S L  ++   +   ++   K   G+  +    Q 
Sbjct: 291 G-SVDLKLNLTGLFNVYNSLA--AVASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQP 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           F  L+D  Y   P  ++   +VLS      +GR I V G
Sbjct: 348 FAVLVD--YAHTPDGLE---NVLSAAREFTKGRLITVFG 381


>gi|206578645|ref|YP_002240437.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288937137|ref|YP_003441196.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|290512560|ref|ZP_06551926.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
 gi|226706325|sp|B5Y1U6|MURC_KLEP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206567703|gb|ACI09479.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288891846|gb|ADC60164.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|289774901|gb|EFD82903.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSDDADVRVEDYRQLGAQGHFRLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  ++V  +  G H A N    + + +    D    ++AL  F   +G G+R+
Sbjct: 277 QDKEILQVTLNAPGRHNALNAAAAVAVATEEGIDDQAILRALESF---QGTGRRF 328


>gi|21224390|ref|NP_630169.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces coelicolor
           A3(2)]
 gi|6919932|sp|Q9X827|MURC_STRCO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4691386|emb|CAB41553.2| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           coelicolor A3(2)]
          Length = 462

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 26/214 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++V +   L IPV    D L AL        LR     IA+ G+ GKTTT  ML ++L
Sbjct: 83  NPELVRA-AELGIPVVHRSDALAALMN-----GLRP----IAVAGTHGKTTTTSMLAVSL 132

Query: 131 SSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           S +    +YA  G  +     P + A        G  E+ ++   E     H   P +A+
Sbjct: 133 SELDLGPSYAIGGDLD----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAI 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +  +   H +N++ ++EI  +  E F G +   GT+ +  D      L  +  A  ++T+
Sbjct: 183 VLNVELDHHANYASMDEIYESF-ETFAGKIVPGGTLVIAADHEGARELT-RRLAGRVRTV 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            ++G+S++AD ++        +S + V L G  +
Sbjct: 241 -TYGESEDADVRILSVVPQGLKSEVTVVLDGAEL 273


>gi|332288554|ref|YP_004419406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
 gi|330431450|gb|AEC16509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 158/370 (42%), Gaps = 50/370 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            + A I+AITGS GK+T   + T+     K     +G   N IG+P  L+ +       +
Sbjct: 105 EADAPIVAITGSNGKST---VTTLVYEMAKAADLNVGIGGN-IGIP-ALSLLGKGCQLYV 159

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T+ +    A I  I+  H++ +  +EE   AK  I+   E   TI 
Sbjct: 160 LELSSFQLE----TTYSLNAAAATILNISEDHMNRYDDMEEYRQAKLRIYRHAE---TIV 212

Query: 225 LNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSME 282
           +N +D + +   +   H L      SF + K+AD+ L++ W      +   + L  + M+
Sbjct: 213 VNNEDRATYPDYREPQHRL-----LSFAE-KHADYYLQEMWGHTYLATDSRLLLDVEKMK 266

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG H   N L  + +   +       I AL  F    G   R++    +     +
Sbjct: 267 L----IGRHNYMNALAAIALAQAVKIPQQGIIDALQSF---AGLDHRFQTVHYENGVRWV 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L Q++    G    +LG     G+  ++   DL  +++  NI 
Sbjct: 320 NDSKATNVGSTEAALNGL-QVA----GNLYLLLG-----GDGKKADFSDLKPLINKSNI- 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             +  G   L L +   +S+ V   +TM+     I+  L  GD+V++  S +C       
Sbjct: 369 FCYCFGQDKLPLAELSSQSVVV---DTMEQAIEQIRPKLKAGDMVLL--SPACAS----- 418

Query: 463 LLLEEFPAIQ 472
             L++FP  +
Sbjct: 419 --LDQFPNFE 426


>gi|145220114|ref|YP_001130823.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206278|gb|ABP37321.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 476

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 123/320 (38%), Gaps = 43/320 (13%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMP 157
           V   L  K T I + G+ GKTTT  ++   L S  ++  +  +G    + G+     R  
Sbjct: 97  VRRELIGKNTSIVVAGTHGKTTTTSIVAWLLESGGLRPGF-LVGGIPENFGIG---CRPS 152

Query: 158 VDVDFGIF-----ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              D G F     E   +   + R    L RP IA+I  I   H   FS +EEI  +   
Sbjct: 153 GRSDEGFFVSEGDEYDTAFF-DKRSKFMLYRPDIAIINNIEFDHADIFSSLEEIKRSFRL 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N DD     ++  S AL    + +FG +   D+  +          +
Sbjct: 212 LVNLIPSNGALIVNGDDPV--AMEVSSKALC--RVETFGLTDGCDWTAQN---------I 258

Query: 273 EVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-H 321
            V+  G S ++ + G           G +   N L ++ + ++    +D   + L  F  
Sbjct: 259 RVEENGSSFDLYYKGGFERRFNAPLFGSYNILNTLASIAVATLSGMTLDMTAEGLREFLR 318

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           PK    +       +G  T+I E +  +P +++  +  + +  P    RRI    +    
Sbjct: 319 PKR---RMETVGTYEGNITVI-EDFAHHPTAIRVTLEAIKERWPE---RRIITCFEARSN 371

Query: 382 GELSQSFHIDLAEVLSLYNI 401
                 F  +LAE     +I
Sbjct: 372 TTTRNIFQKELAECFGPADI 391


>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTVEYMRSTA-----ATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 528

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 150/415 (36%), Gaps = 42/415 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVF 86
           G+S+DS   AP E F  + G    G  F   AV  GA  V+ ++D   +    +   PV 
Sbjct: 49  GVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDSDGAQIVHESAPGTPVL 108

Query: 87  GVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              D    +  L+  A       +I  A+TG+ GKTTT   L   LS+        G+  
Sbjct: 109 VHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGTVE 168

Query: 145 NHIG-----VPLTLARMP---------VDVDFGIFEL-GMSHLGEIRFLTHLVRPHIAVI 189
             +G      P T    P         V+   G   L   SH   +  L  +V   +A  
Sbjct: 169 LRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGIVV-DVAGF 227

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AKA +F   E      +  DD +   L A +  + I  + +
Sbjct: 228 TNLQRDHLDFHKTMEGYLEAKARLFT-PEHARRGVVCVDDQWGAALAADA-PIEIDRVRA 285

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSIL 306
           +     AD+ +         S     L G   E +       G    QN  + L +    
Sbjct: 286 YPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIRA 345

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                TA  AL+  H   GR +R      +    ++D  +   P +M+ A+  +  I+P 
Sbjct: 346 GVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPEAMELALKAVRPITP- 402

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             GR I V G     G+  Q     L +V +             VL + D  PRS
Sbjct: 403 --GRLIVVFG---SDGDRDQGKRPMLGQVCARLA---------DVLVITDENPRS 443


>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
 gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
          Length = 452

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 28/271 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFG 163
           + A +IAITG+ GKTT    +T  +  + K+         +IG+P+  TL+    DV   
Sbjct: 109 TSAKLIAITGANGKTT----VTTLVGEMCKSAGLKTIVAGNIGLPVLDTLSMETPDV--Y 162

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ +    A +  ++  H+  +  ++  A AKA IF   +     
Sbjct: 163 VLELSSFQLET----TNSLLADAATMLNLSEDHMDRYDSMQSYAVAKAHIFYHAKLQ--- 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+ + L+ A++    +    +FG       Q    KQ + ++W+        M +
Sbjct: 216 VLNRDDA-WSLMMARAKLAQV----TFGLDDVVAEQDYGIKQVNGETWLSCGTH-DLMNI 269

Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               I G H A N L  + +   +  D    I+ L  F   +G   R     N       
Sbjct: 270 RDLKIAGLHNASNALAAMALCRGIGLDFAPIIQTLYNF---KGLPHRVEWVANIDDVDYY 326

Query: 343 DESYNANPASMKAAISVLSQ---ISPHGEGR 370
           D+S   N  +  AA+S LSQ   +   GEG+
Sbjct: 327 DDSKGTNVGATCAALSGLSQKVVLIAGGEGK 357


>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
 gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + +          +IG+P LTL + P  +   +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAQAAGWQVGVGGNIGLPVLTLLQQPAQLY--V 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L   R L        A I  +   H+  +  G+++  +AK  I+   E     
Sbjct: 157 LELSSFQLETTRSL----HAAAATILNVTEDHMDRYPLGMQQYRAAKLRIY---ENATVC 209

Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD+    +  A +  L      SFG +   D+ L + +Q S  +W+ VQ +     
Sbjct: 210 VVNADDAMTIPVRGADARCL------SFG-ADVGDYHLTR-QQGS--TWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     +++ AL+ F   +G   R++          I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRASSLTALTTF---KGLAHRFQLVHEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVL 360
           ++S   N  S +AA++ L
Sbjct: 317 NDSKATNVGSTEAALNGL 334


>gi|302383799|ref|YP_003819622.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194427|gb|ADL01999.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 111/287 (38%), Gaps = 32/287 (11%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++T I P HL ++   + +  A  +  E +   G   +  D    + L A+   +  +
Sbjct: 183 VAIVTNIDPEHLDHYGDFDAVRKAFCDFVENIPFYGFAAVCLDHPEVQRLVAQ---IDNR 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----------GYHMAQN 295
            I ++G +  A  +  K +   + +  +V +QG+    +   +          G+H   N
Sbjct: 240 RIVTYGMNPQAMVRADKVEMSPDGARFDVLIQGRGAAALEDPVRIPDLHLPMAGWHNVAN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   L    D     L+ F    G  +R+          ++D+ Y  +P  + A
Sbjct: 300 ALAAIAVARELDVSDDAIRAGLASF---AGVKRRFTTTGVVNGVRIVDD-YGHHPVEIAA 355

Query: 356 AISVLSQI--SPHGEGRRIAV--------LGDMCEMGELSQSF-HIDLAEVLSLYNISHV 404
            +    Q+  +  G GR IAV        L D+  M E S SF   D   V  +Y     
Sbjct: 356 VLKAARQVAHTAEGGGRVIAVVQPHRFTRLRDL--MDEFSTSFSDADSVIVADVYAAGEA 413

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVV 449
            + G    AL D + R  H+  S   +   L   I      GDVVV+
Sbjct: 414 PIEGVDKQALVDGIRRYGHLRVSALENAAVLPRVIAEEAKAGDVVVL 460


>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
 gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTVEYMRSTA-----ATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR + P   FFA KG  +   +F+ +AVQ G    V   D       + IP   V 
Sbjct: 38  LSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVQAGLSFYVAEKDY-----QVGIPAIIVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A A     + K  ++A TG+ GKTT
Sbjct: 91  DIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTT 124


>gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
 gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I++DSR++AP   F A+ G   DG  FI  A++ GA  V+   D +A      I V 
Sbjct: 23  ISDITLDSRAVAPGAVFVAMPGGESDGRGFIDDALRAGAAAVLAEADGLAQQHPKVIAVP 82

Query: 87  GVDDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +    G + +     V+AR+     ++A+TG+ GKT+  ++    L  +      IG+ 
Sbjct: 83  ALRSRCGDIARRGFGDVSARM----ALVAVTGTNGKTSIADITAQLLRGLGVKTGTIGTL 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFEL 167
            +      T+A   V+    +F L
Sbjct: 139 GSRTN---TVAATAVNTTPDVFTL 159


>gi|114566364|ref|YP_753518.1| UDP-N-acetylmuramate--alanine ligase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|123322290|sp|Q0AYQ7|MURC_SYNWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114337299|gb|ABI68147.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 22/246 (8%)

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ML + L++     + I      +G  L  + +   +  G + +  +   +  F
Sbjct: 117 GKTTTTSMLYMVLANCGTEPSFI------VGGELQGSELNAKLGRGDYFVVEADESDASF 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L   +RP+IA+IT +   HL  +  ++ I  A  +  E +   G   L   D+F   L  
Sbjct: 171 LD--LRPYIALITNVEDDHLDYYKSVDNIRKAFRQFVEQIRPEGFAMLYGGDAFNRSL-V 227

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSMEVVHHGIGYHM 292
           K   L  + ++ +G+  + D+    W+     S  +V  +     G+    V    G H 
Sbjct: 228 KDLTLNKRLLF-YGEDLSNDYYFLNWESIGLGSHFDVYKRELGFLGRFELAVP---GKHN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N L  +     L  +++    AL  FH   G  +R++    +   T++D+ Y  +P  
Sbjct: 284 ALNALAAIASALELGLEMEPIKSALKNFH---GARRRFQIQGQKALVTVVDD-YAHHPTE 339

Query: 353 MKAAIS 358
           ++A I 
Sbjct: 340 IRATID 345


>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + +          +IG+P LTL + P  +   +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAQAAGWQVGVGGNIGLPVLTLLQQPAQLY--V 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L   R L        A I  +   H+  +  G+++  +AK  I+   E     
Sbjct: 157 LELSSFQLETTRSL----HAAAATILNVTEDHMDRYPLGMQQYRAAKLRIY---ENATVC 209

Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD+    +  A +  L      SFG +   D+ L + +Q S  +W+ VQ +     
Sbjct: 210 VVNADDAMTIPVRGADARCL------SFG-ADVGDYHLTR-QQGS--TWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     +++ AL+ F   +G   R++          I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRASSLTALTTF---KGLAHRFQLVHEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVL 360
           ++S   N  S +AA++ L
Sbjct: 317 NDSKATNVGSTEAALNGL 334


>gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 493

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV+G          + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +
Sbjct: 116 VPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAV 166

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G    +IGV L  A +  D  + +  + +S   ++ +   L R H   +  +AP HL   
Sbjct: 167 G----NIGVSLLDAVL-GDETYDVLAVELSSY-QLHWAPSL-RAHSGAVLNLAPDHLDWH 219

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             +   A+ K  I+EG      ++   D +  +L++      G + I
Sbjct: 220 GSMAGYAADKGRIYEG-NSVACVYNAQDAATEDLVREADVEEGCRAI 265


>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc punctiforme PCC 73102]
 gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
           73102]
          Length = 500

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 15/219 (6%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +FG+ E+    L + R L    +  +AV + +   HL     +E+  +AKA +F      
Sbjct: 180 EFGVMEVSSHALAQGRVLG--CQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPDYLK 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGK 279
           G   +N DDS+ + L A   +L  + ++S+  + N AD  +       E + +   L   
Sbjct: 238 GRAIINADDSYGKRLIA---SLDSERVWSYSVNDNSADLWMSDLSY--EPNGVSGILHTP 292

Query: 280 SMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +V      +G +  +N+L  +G    L  D+      +  F    GR +R +   +Q 
Sbjct: 293 KGDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQD 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              ++D  Y   P S++   ++L    P   G+ I V G
Sbjct: 353 ISVIVD--YAHTPDSLE---NLLKAARPFIPGKVICVFG 386


>gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf-5]
 gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 72/365 (19%), Positives = 147/365 (40%), Gaps = 41/365 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     +    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYDGDFNKLKKTFVDFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +  +      +   ++G S+ AD +    +Q   Q++  V  + +  ++V  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADVRAINVRQQGMQTFFTVLRRDREPLDVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNSLATICIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELPVEGGNVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL+  N+ 
Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWPE---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANVL 396

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451
               V+ +G   +   D+      +     +D +++         ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPLLRAGDILLCQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDIG 461


>gi|25011704|ref|NP_736099.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           NEM316]
 gi|77414228|ref|ZP_00790390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
 gi|44888215|sp|Q8E3U2|MURC_STRA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24413244|emb|CAD47323.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159717|gb|EAO70866.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 119/298 (39%), Gaps = 40/298 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T + + G+ GKT+T  +L   L +I  T   IG             R   + ++ +FE  
Sbjct: 104 TSLGVAGAHGKTSTTGLLAHVLKNITDTSFLIGD---------GTGRGSANANYFVFEAD 154

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E  F+ +   P  ++IT I   H   F+G+E++ +A  +  + ++K   +F+  +
Sbjct: 155 EY---ERHFMPY--HPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQVQK--GLFIYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           DS    + +K+       IY +G   + DF  +   +    S  +V    + +   H   
Sbjct: 208 DSKLHEITSKA------PIYYYGFEDSNDFIAKDITRTVNGSDFKVFYNQEEIGQFHVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    +  + I+  D+     AL   H K   G + R        T+I + + 
Sbjct: 262 YGKHNILNATAVIANLYIMGIDM-----ALVAEHLKTFSGVKRRFTEKIIDDTVIIDDFA 316

Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            +P  + A +    Q            PH   R IA+L D      LSQ+  + LA++
Sbjct: 317 HHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAHA--LSQADSVYLAQI 372


>gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
          1_3_56FAA]
 gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
          1_3_56FAA]
          Length = 500

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          VNGI+  S  + P +AFF + G   DGH F   A+ +GA ++VV 
Sbjct: 24 VNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVE 68


>gi|307132585|ref|YP_003884601.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
 gi|306530114|gb|ADN00045.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 189/457 (41%), Gaps = 63/457 (13%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++  G +   
Sbjct: 4   QGRKVVIIGLGLTGLSCVDFFLARGVVPRVVDTRISPP---GLDKLPESVERHLGSLNDE 60

Query: 69  -VVNTDM-VASIG-SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +++ D+ VAS G +L+ P+     +  +  +  + +  R  ++A I+AITGS GK+T  
Sbjct: 61  WLLSADLIVASPGIALATPILCEAAEAGIEIVGDIELFCR-EAQAPIVAITGSNGKST-- 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +T  +  +            +IGVP  L  +  +    + EL    L E  +  H   
Sbjct: 118 --VTTLVGEMAHAAGWAVGVGGNIGVP-ALELLKQESQLYVLELSSFQL-ETTYSLHAA- 172

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              A I  +   H + +  G+++  +AK  I+E  +      +N DD+    ++      
Sbjct: 173 --AATILNVTEDHTNRYPLGLQQYRAAKLRIYENAK---VCIVNADDALTMPVRGAD--- 224

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLM 298
                 SFG     D+ L + +    ++W+ V+    L  + +++V    G H   N L 
Sbjct: 225 --ARCLSFGVDV-GDYHLNRQQG---ETWLRVKGERVLNTREIKLV----GQHNYTNALA 274

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   +     +A+ AL+ F    G   R++ AL +     +++S   N  S +AA+S
Sbjct: 275 ALALADAVGIPRSSALIALTSF---TGLPHRFQLALARHDVRWVNDSKATNVGSTEAALS 331

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L     H +G    +LG   +  + S        + + LY        G  + AL+  +
Sbjct: 332 GL-----HVDGTLHLLLGGDGKSADFSPLLRYLQGDRIRLYCFGR---DGGQLAALRPEI 383

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   +ETM+     I S    GD+V++  S +C
Sbjct: 384 -----AEQTETMEQAMRLIASRAQPGDMVLL--SPAC 413


>gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 24/153 (15%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLR-------SKATIIAITGSVGKTTTKEML 126
           ++ + G   +PV+         +++ +A RLR         A  +A+TG+ GKTTT EML
Sbjct: 85  LLVAAGGAGVPVW---------SEVELAWRLRVDRAAGGGPAPWLAVTGTNGKTTTVEML 135

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+       +G    ++G PL  A +  D+D    EL    L       H V    
Sbjct: 136 ASILSAAGLRTRAVG----NVGTPLIEAALDPDLDVLAVELSSFQL----HFAHTVAVQA 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             I  +A  HL     +    + K  I+E  E+
Sbjct: 188 GAILNLAEDHLDWHGTMAAYGADKGRIYERAER 220


>gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
 gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
          Length = 516

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P G V G  ID+R +   E F A+ G H  G  F   A+ +GA  V+ +   +  + +  
Sbjct: 36  PVGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVLTDAAGLDLVANPE 95

Query: 83  IPVFGVDDV 91
           +PV  V DV
Sbjct: 96  VPVITVPDV 104


>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 493

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
          + G+  DSR I P   F  I G   DGHD++L AV  GA  ++V   +    G+  + V 
Sbjct: 24 IKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAGAIALLVEKPVA---GTQGVTVV 80

Query: 87 GVDDVLGAL 95
           V D   AL
Sbjct: 81 RVKDTRKAL 89


>gi|297569450|ref|YP_003690794.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925365|gb|ADH86175.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 490

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 132/362 (36%), Gaps = 72/362 (19%)

Query: 64  GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA +VV+       N ++ A+  +L IPV    ++L  L        +R K   IA+ GS
Sbjct: 64  GADVVVISSAVKPDNPEVTAAHEAL-IPVIPRAEMLAEL--------MRLKINGIAVAGS 114

Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKT+T  M    L+         IG   N  G    L     + DF + E   S   + 
Sbjct: 115 HGKTSTTSMAGTLLAEAGLDPTVVIGGQVNSFGSNAKLG----EGDFLVAEADES---DG 167

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            FL   + P + ++T I   H+ ++  +E + +A  E    +   G   L  DD     L
Sbjct: 168 SFLK--LSPVLEIVTNIDLEHVDHYHDLEAVKAAFLEFINRIPFYGAAILCLDDPNVAAL 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRK------------WKQCSEQSWME----VQLQGK 279
                 L  K   ++G S  AD Q R+            W++  EQ+        Q  G 
Sbjct: 226 L----PLVRKRTITYGLSSQADVQAREITSRGFVSRFEVWQRGREQATNNGKNCAQDNGM 281

Query: 280 SMEVVHHG------------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + + V                G H   N L  + +   L        +ALS +    G  
Sbjct: 282 AQDAVSREPLRKLGSVALAVPGRHNIYNALAVIALGLELEIPFPVIARALSTY---SGVQ 338

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGD 377
           +R          T++D+ Y  +P  ++A ++ + Q            PH   R   +L D
Sbjct: 339 RRLEVKGEVDGITVVDD-YGHHPTEIRATLAAMRQAWPKRRLVVLFQPHRYSRTAGLLPD 397

Query: 378 MC 379
            C
Sbjct: 398 FC 399


>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
 gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
          Length = 447

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VLG +   A  A    +A +IAITGS GK+T  E++     S   T A  G    ++G 
Sbjct: 96  NVLGDIELFARCA----QAPLIAITGSNGKSTVTELVGSMAQSAGMTVAIGG----NLGT 147

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           P      P  VD  + EL    L  ++ L    RP  A +  I+  H+  +S IE  
Sbjct: 148 PALEILAPA-VDLYVLELSSFQLETVQSL----RPKAATVLNISEDHMDRYSSIEAY 199


>gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
          6-diaminopimelate ligase [Eggerthella sp. HGA1]
 gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
          6-diaminopimelate ligase [Eggerthella sp. HGA1]
          Length = 500

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          VNGI+  S  + P +AFF + G   DGH F   A+ +GA ++VV 
Sbjct: 24 VNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVE 68


>gi|331645198|ref|ZP_08346309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
 gi|330909935|gb|EGH38445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           AA86]
 gi|331045955|gb|EGI18074.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 142/355 (40%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A+ R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAVLRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
 gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 55  DFILHAVQ--KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           D IL+A +  K  G +   ++++  + +  +PV         ++++  A R    + +IA
Sbjct: 59  DVILNADEIIKSPG-IPEKSELMKKVRAQQVPV---------ISEIEFAYRYSKDSKVIA 108

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GK+TT  +      +     A +G    +IG+           D+ I E+    L
Sbjct: 109 ITGSNGKSTTTALTFNIFETAGLHAAMVG----NIGLSYARQIATAPADYYIVEVSSFQL 164

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            +IR      +P++A++  I P HL  + 
Sbjct: 165 DDIRDF----KPNVAILLNITPDHLDRYD 189


>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 108 ATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGI 164
           A I  ITGS GKTTT  ++  I ++   +T+  +G    +IG PL  ++  M  + D  +
Sbjct: 117 ARIFGITGSDGKTTTTTLVYNILMTEGYRTW--VGG---NIGNPLFASIEEMKEE-DKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T     + A++T ++P HL     +EE   AK  +F+  E    + 
Sbjct: 171 LELSSFQL-----MTMEEEINCALVTNLSPNHLDIHKDMEEYVDAKKNVFKYQENKDLLV 225

Query: 225 LNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           LN D    +S  E  K +      K     G   N D  +   K+    +  +++L+   
Sbjct: 226 LNKDNDITNSLTEEAKGRVMKFSRKEEIKDGAYLNGDKLVLLGKEIC--TLGDIKLK--- 280

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                   G H  +N+L    +VS   A +++  K  + F      G ++RC
Sbjct: 281 --------GMHNVENLLAAFCLVS-EDASIESMAKVATTF-----TGVQHRC 318


>gi|329888140|ref|ZP_08266738.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
 gi|328846696|gb|EGF96258.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 32/287 (11%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I P HL ++   + +  A  +  E +   G   +  D    + L A+   +  +
Sbjct: 183 VAIITNIDPEHLDHYGDFDAVKKAFGDFIEDIPFYGFGVVCLDHPEVQKLAAQ---IDNR 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---------EVVHHGI-GYHMAQN 295
            + ++G +  A  +    +   + S  +V +QG+ M         E +H  + G+H   N
Sbjct: 240 RLVTYGLNPQAMVRADNVRMDPDGSRFDVVIQGQGMAALGEPARIENLHLPMAGWHNVSN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   +  D D     L+ F    G  +R+          +ID+ Y  +P  + A
Sbjct: 300 ALAAIAVAREIGVDDDAIRTGLAGFG---GVKRRFTTTGVAHGVRVIDD-YGHHPVEIAA 355

Query: 356 AISVLSQISPHGE--GRRIAV--------LGDMCEMGELSQSF-HIDLAEVLSLYNISHV 404
            +    Q+  + +  GR IAV        L D+ E  + S  F   D   V  +Y     
Sbjct: 356 VLKAARQVVQNADNTGRVIAVVQPHRYTRLRDLME--DFSTCFSDADSVLVADVYPAGEQ 413

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVV 449
            + G    AL + + R  H H +   +   L   I+     GD+VV+
Sbjct: 414 PIEGVDKHALVEGVRRYGHRHVAALENAAVLPRVIKDEAKPGDLVVL 460


>gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
          2243]
 gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
          2243]
          Length = 500

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          VNGI+  S  + P +AFF + G   DGH F   A+ +GA ++VV 
Sbjct: 24 VNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVE 68


>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
 gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
          Length = 511

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 150/382 (39%), Gaps = 38/382 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G  P   + G+  DSR   P   F A+ G   DGH ++  A   GA   VV   + A I
Sbjct: 16  LGHAPTAELTGVCCDSRQAGPGMVFVAVVGHSADGHAYVAAAAAAGATAAVVQRPVEADI 75

Query: 79  GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT---------TKEMLT 127
             + +P     D   AL+ LA   A R   +  ++ +TG+ GKTT          +   T
Sbjct: 76  AQIVVP-----DSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICHLARAIMAQRWPT 130

Query: 128 IALSSIKKTYACIG-----SYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL 181
             + +++  +A +      +  + + +  TLA M  + V+    E+    L + R     
Sbjct: 131 GMIGTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHR--ADH 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLNYDDSFFEL 234
            R  + + T ++  HL     + +   AK  +F  L        K     +  DD    +
Sbjct: 189 CRFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRV 248

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  ++   G+  + ++G +  AD   R      +   + +   G S+E     +G +  Q
Sbjct: 249 LADQARGTGL-ALLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQ 307

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N++    +   L    +     L       GR +R     ++     +D  Y  +P ++ 
Sbjct: 308 NIVGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRVP-GPDRSPAVFVD--YAHSPEAIA 364

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
           AA++VL    P   GR I V G
Sbjct: 365 AALAVL---RPLCAGRLICVFG 383


>gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    +   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYIAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    +   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLAWYIAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
 gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
          Length = 528

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 160/425 (37%), Gaps = 73/425 (17%)

Query: 22  VPQGFVNGISI-----DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           VP+ F     I     DSR++ P  AF A+ G   DG  F   A+  GA LVV   +   
Sbjct: 38  VPEAFAGSPGIAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPT 97

Query: 77  SI------------GSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           +             G+  +PV  V +   AL  LA A       +  +  ITG+ GKTTT
Sbjct: 98  AADREADPQIGEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTT 157

Query: 123 KEMLTIALSSI--KKTYACIGSYN---NHIGVPL------------TLARMPVDVDFGIF 165
             +L   L+ I  K       +     + +G P              L RM   V  G  
Sbjct: 158 SYVLYNLLAGILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRM---VGAGAS 214

Query: 166 ELGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           +  +   SH  E+  +T  V    A+ T +   HL     +E     K ++FE  E  G 
Sbjct: 215 DAVLETSSHGLELHRVTG-VEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFERTE--GP 271

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--S 280
              N DD +   L     A       +FG S  AD+Q+            ++ L+G   +
Sbjct: 272 RLANVDDDYGRRL-----AREFPGSLTFGYSPEADYQI--------VDPTDLTLEGMQFT 318

Query: 281 MEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +    HG        +G + A N+   + +      D    + A+       GR +R   
Sbjct: 319 LRTPGHGELRLEPPLVGDYNALNVAGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAE 378

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A + GF  ++D  Y      ++  ++V  +I+    GR I V G     GE   +    +
Sbjct: 379 AADHGFMAVVD--YAHTEVGLEMVLTVARKIADMAGGRLICVYG---AAGERDAAKRPLM 433

Query: 393 AEVLS 397
            EV+S
Sbjct: 434 GEVVS 438


>gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|291301480|ref|YP_003512758.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570700|gb|ADD43665.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 16/179 (8%)

Query: 100 VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           +A RLR    A  +AITG+ GKTT   ML   L++     A +G    +IG PL  A + 
Sbjct: 94  LAWRLRPADAAPWLAITGTNGKTTAVTMLASILTAAGLKTAALG----NIGTPLVDA-VT 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D D    EL    L   + L+    P +  +  +A  HLS     +  + AK  I+ G 
Sbjct: 149 ADYDVLAVELSSQQLHWSKQLS----PRVGALLNLADDHLSWHGDFDAYSHAKTAIWRGD 204

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              G    N DD     L  K         ++ G+     F +R  K         V L
Sbjct: 205 VHIG----NADDPRVSAL-LKDAPGDTPITFTLGEPSPGQFGVRDGKLVDNTGTAPVAL 258


>gi|215485254|ref|YP_002327685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312966216|ref|ZP_07780442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|215263326|emb|CAS07641.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamateligase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289459|gb|EFR17353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|320197461|gb|EFW72075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           WV_060327]
 gi|323190230|gb|EFZ75506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           RN587/1]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 140/353 (39%), Gaps = 46/353 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  S +AA++ L     H +G    +LG              D + +    
Sbjct: 314 CWVNDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYL 360

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           N  +V L  F     + A  R      +ETM+     + + +  GD+V++  +
Sbjct: 361 NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLATRVQPGDMVLLSPA 413


>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Yersinia enterocolitica subsp. enterocolitica
          8081]
 gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate
          ligase [Yersinia enterocolitica subsp. enterocolitica
          8081]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
          VP+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S+
Sbjct: 12 VPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASM 71

Query: 82 ----SIPVFGVDDVLGALNKLA 99
               +PV  + ++   L+KLA
Sbjct: 72 VEMHGVPVIYLRNLNQHLSKLA 93


>gi|297530715|ref|YP_003671990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
 gi|297253967|gb|ADI27413.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+   I ITGS GKTTT  ++   L +  +     G    +IG V   +AR      + +
Sbjct: 110 SEGPFIGITGSNGKTTTTTLIYEMLKADGQDPLLAG----NIGLVACEVAREAKPGQWLV 165

Query: 165 FELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            EL    L  I +F     RP IAV+  I  AHL      E  A+AKA IF    +    
Sbjct: 166 TELSSFQLAGIDKF-----RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYA 220

Query: 224 FLNYDDSF 231
            +N DD  
Sbjct: 221 VVNADDPL 228


>gi|257784288|ref|YP_003179505.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
 gi|257472795|gb|ACV50914.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
          Length = 467

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 15/155 (9%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  + PH+A++  I P HL     +E  A+AK +IF  L+      ++  D F   + ++
Sbjct: 175 TQKLHPHVAMLLNITPDHLEWHGSLEAYAAAKEKIFANLDVNDLAIVSDLDEFCLAVSSR 234

Query: 239 SHALGIKTIY---SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HGIGYH 291
             A GI   +   +   ++NA F             + V+L GK ME+V     H  G H
Sbjct: 235 LEARGISVCHLAQTDPGTQNAAF--------VRNGALVVRLSGKEMELVATDALHIRGMH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            A N L        L  D+ +   AL  F P E R
Sbjct: 287 NALNALAAAACGLFLGIDIVSIRHALLDFMPLEHR 321


>gi|261419315|ref|YP_003252997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. Y412MC61]
 gi|319766131|ref|YP_004131632.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
 gi|261375772|gb|ACX78515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC61]
 gi|317110997|gb|ADU93489.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+   I ITGS GKTTT  ++   L +  +     G    +IG V   +AR      + +
Sbjct: 110 SEGPFIGITGSNGKTTTTTLIYEMLKADGQDPLLAG----NIGLVACEVAREAKPGQWLV 165

Query: 165 FELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            EL    L  I +F     RP IAV+  I  AHL      E  A+AKA IF    +    
Sbjct: 166 TELSSFQLAGIDKF-----RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYA 220

Query: 224 FLNYDDSF 231
            +N DD  
Sbjct: 221 VVNADDPL 228


>gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale
           M104/1]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F  I G   D HDFI   V+KGA  VVV  D+    G   +    VDD  
Sbjct: 29  DSRKVEKASVFVCISGAVSDAHDFIPDVVKKGAAAVVVEKDVTPIEG---VTYIKVDDTR 85

Query: 93  GALNKLAVA 101
            AL  ++ A
Sbjct: 86  LALACMSAA 94


>gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM
           17629]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F  I G   D HDFI   V+KGA  VVV  D+    G   +    VDD  
Sbjct: 29  DSRKVEKASVFVCISGAVSDAHDFIPDVVKKGAAAVVVEKDVTPIEG---VTYIKVDDTR 85

Query: 93  GALNKLAVA 101
            AL  ++ A
Sbjct: 86  LALACMSAA 94


>gi|225871161|ref|YP_002747108.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           equi 4047]
 gi|254766023|sp|C0M809|MURC_STRE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225700565|emb|CAW95064.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           equi 4047]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 40/283 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T + + G+ GKT+T  +L+  L  +  T   IG    H            D  + +FE  
Sbjct: 104 TSLGVAGAHGKTSTTGLLSHVLKHMTATSYLIGDGTGHGAA---------DARYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P  ++IT I   H   F+G++++ +A  +  + ++K   +F+  +
Sbjct: 153 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQVKK--ALFVYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           D   EL K  S A     IY +G     DF      + +  S  +V+ +G ++   H   
Sbjct: 208 DE--ELRKISSPA----PIYYYGFEDTDDFVAFDITRTTNGSDFKVKHKGHAIGQFHVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESY 346
            G H   N    +  + I   D+    + L  F    G  +R+    +N    T+I + +
Sbjct: 262 YGRHNILNATAVIANLFIAGFDMKLVAEHLKSF---SGVKRRFTEKVIND---TIIIDDF 315

Query: 347 NANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
             +P  + A +    Q            PH   R IA+L D  
Sbjct: 316 AHHPTEIIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFA 358


>gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + IS DSR +  +  FF +KG  +   +F+L A+ +G    +   D       + IP   
Sbjct: 36  DSISYDSRKVKERSLFF-VKGASFK-KEFLLSAISQGLDWYIAEQDY-----EVGIPAII 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V+D+  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 89  VNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124


>gi|255320976|ref|ZP_05362149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262379934|ref|ZP_06073089.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
 gi|255301940|gb|EET81184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262298128|gb|EEY86042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
          Length = 448

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 42/285 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  ++  I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 100 RRATEVPIVAITGSNAKSTVTTLIGLMAKEAGKKVAVGG----NLGRP-ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L      T L+   +AV+  ++  HL     +    +AK  IF+G++K   
Sbjct: 155 IILELSSFQLET----TSLLNAEVAVVLNMSEDHLDRHGDMLGYHAAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++ D  L  W     +  +     
Sbjct: 208 VVFNRDDALSRPLVPDAVPVQSFGLNAPDMNQYGVLRDTDGTL--WLARGRERLL----- 260

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--- 334
            KS E+   G   H   N L  L +   +   +++ ++ L  F     +G  +RC     
Sbjct: 261 -KSTEMYIQGT--HNIANALACLALGEAIGLPLNSMLETLKSF-----KGLAHRCEYVDT 312

Query: 335 --NQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLG 376
             N  ++   ++S   N  +  AAI  L + I+P  +G+ + +LG
Sbjct: 313 VNNVRYY---NDSKGTNIGATLAAIEGLGAAIAPR-KGKVVVILG 353


>gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS8232]
 gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes MGAS8232]
 gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 562

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 167/425 (39%), Gaps = 93/425 (21%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----GAGLVVVNTDMVASIGSL 81
           V+ I++DSR +  +  F A+ G    G +F      K      AG+ ++N    A   S 
Sbjct: 24  VDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQTSAKAVLTDAAGVDILNGSDTAE--SF 81

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             P+  VDD+   L  ++  +        T++ +TG+ GKTTT  +L   L +   +   
Sbjct: 82  DRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTSGKTTTTYLLESGLLAAGYSTGL 141

Query: 140 IGSYNNHIGVPLTLARMPVD------------------VDFGIFELGM---SH---LGEI 175
           IG+    I       R PVD                  VD G+  + M   SH   LG +
Sbjct: 142 IGTTGTRIN------RTPVDTQLTTPEAPTLQELFARMVDEGVTHVVMEVSSHALDLGRV 195

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           + +   V       T ++  HL     +EE  SAKA++F G        +  +D + E L
Sbjct: 196 QGVDFAV----GGFTNLSQDHLDFHPTMEEYFSAKAKLFVGNNAARHAVVCINDDWGERL 251

Query: 236 KAKSHALGIK-TIYSF----------GKSKNADFQLRK-------------WKQCSEQSW 271
             +  A  I  T+ S           G    AD  LR+             W+Q  E + 
Sbjct: 252 ADQVDAEDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTRELLVPGTVVAWQQSVETTG 311

Query: 272 -MEVQLQ---GKSMEVVHHGI-----------GYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +V L+    +  EV+   +           G     N  + +G+ S    D+DT I A
Sbjct: 312 EQQVALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMASAAGIDLDTFITA 371

Query: 317 LS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHG---EGRR 371
           L+ V  P    G+  R    Q F  ++D  Y   PA+++A +  L SQ+   G   +GR 
Sbjct: 372 LTKVAVP----GRMQRIDEGQDFVAVVD--YAHKPAAIEAVLETLRSQLESAGNTAQGRL 425

Query: 372 IAVLG 376
             V+G
Sbjct: 426 GVVVG 430


>gi|293408179|ref|ZP_06652019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
 gi|291472430|gb|EFF14912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|294635010|ref|ZP_06713527.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
 gi|291091609|gb|EFE24170.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
          Length = 476

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 70/368 (19%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T + A    +       IPV    ++L  L       R R     IAI G+
Sbjct: 66  RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       +   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 117 HGKTTTTAM-------VASIYAEAGLD-------------PTFVNGGLVKAAGTHARLGS 156

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +A++T I   H+  + G  E +          L   G 
Sbjct: 157 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281
             L  DD     L  +   +G + + ++G S++AD ++ +++Q   Q    +  Q +  +
Sbjct: 216 AVLCIDDPVIRELLPR---VG-RHVTTYGFSEDADVRIEEYRQSGAQGGFFLCRQDRPRL 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--------RCA 333
            V  +  G H A N      +      D +  ++ALS F   +G G+R+        +  
Sbjct: 272 AVTLNAPGRHNALNAAAAAAVAMEEGIDDEAILRALSGF---QGTGRRFDFLGEFSLQHV 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            NQ    ++ + Y  +P  + A I       P    RR+ ++         ++  + D A
Sbjct: 329 NNQPGQVMLVDDYGHHPTEVDATIKAARAGWPD---RRLVMVFQPHRFTR-TRDLYDDFA 384

Query: 394 EVLSLYNI 401
            VLS  ++
Sbjct: 385 NVLSQVDV 392


>gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus pyogenes NZ131]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+A     + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTT 124


>gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis L2tet1]
 gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 91  VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 146 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 200 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 245

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 246 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 306 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 333


>gi|255326230|ref|ZP_05367316.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255296684|gb|EET76015.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 26/181 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSY------ 143
           L  L++    A +  ++ ++A+ G+ GK+TT  M+++    +  + ++A +G+       
Sbjct: 108 LRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQLGAQPSFA-VGTVIAGRGT 166

Query: 144 NNHIGV--PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           N H+G   P T+     D   G F         +R+      P IAV+T + P HL  + 
Sbjct: 167 NAHLGAQGPETIFVAEADESDGSF---------VRYC-----PAIAVVTNVEPDHLDFYE 212

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +  A       L   G +    DD+    L A+S A G+  + ++G++ +AD ++ 
Sbjct: 213 TDERVFEAFNRFVGSLAPNGVVVTCADDAGAADLAARSRAAGVPVV-TYGEAADADLRIS 271

Query: 262 K 262
           +
Sbjct: 272 E 272


>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
 gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L S   KT+  +G    +IG PL   + RM  + D  +
Sbjct: 117 AKVFGITGSDGKTTTTTLVYNMLKSQGYKTW--VGG---NIGNPLFANIERMTKE-DKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T     + A++T ++P HL     +EE  +AK  IF+   +   + 
Sbjct: 171 LELSSFQL-----MTINEDINCALVTNLSPNHLDVHKDMEEYVNAKKNIFKYQNENDLLV 225

Query: 225 LNYDDS 230
           LN D+ 
Sbjct: 226 LNRDNK 231


>gi|238786723|ref|ZP_04630524.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238725091|gb|EEQ16730.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQDGPQGHFTLKR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +      D  ++AL+ F   +G G+R+    N
Sbjct: 277 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIADDDILRALAGF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A + 
Sbjct: 334 FPLAPVNGKEGSVMLVDD-YGHHPTEVDATVK 364


>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
 gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 30/291 (10%)

Query: 80  SLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           SL IP+       G   ++++ VA  L SK+ I+A+TG+ GKTTT  +LT  L    K  
Sbjct: 79  SLDIPIVKAAQARGIDVVSEVEVAYEL-SKSPIVAVTGTNGKTTTTTLLTKVLEGTGKPV 137

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+  + +        MP D  F + EL    L  I+      RP  A++  I   HL
Sbjct: 138 RVGGNIGDSLS--EVAYSMPAD-GFLVAELSSYQLETIKHF----RPIGAIMLNITADHL 190

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKN 255
           +    +E   +AK  IFE    T  + LN DD     ++ +  SH L I           
Sbjct: 191 ARHKTMENYIAAKERIFENQLSTDFMVLNIDDPIVADMEHRVLSHILKI----------- 239

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMTLGIVSILTADVD 311
           +  Q+       ++    V   G +  V+     H  G H  +N+L  + +  +L    +
Sbjct: 240 SQHQVVPNGAYYDKGQCYVTKDGIATPVIGSDDIHIPGSHNIENILTVIALTYVLGVPAE 299

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           T  + +S FH  E R +R +      F+   ++S   N  S+  A+    Q
Sbjct: 300 TIHRIISEFHGVEHRLERVKTIDGITFY---NDSKATNVDSVVKALESFDQ 347


>gi|262370857|ref|ZP_06064181.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
 gi|262314219|gb|EEY95262.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 145/354 (40%), Gaps = 39/354 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +I H  +  +GA ++VV+T + A    +   +     V+     L    R R     IA+
Sbjct: 71  YIGHTAENIQGANVIVVSTAIDAENPEIKAAIETRTPVVRRAEMLGELMRYRHG---IAV 127

Query: 114 TGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            G+ GKTTT  ++T  L+  ++  TY  IG   N  GV   L           F +  + 
Sbjct: 128 AGTHGKTTTTSLVTCMLAEENLDPTY-VIGGLLNRTGVNAALG-------ASRFIVAEAD 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             +  FL HL +P   ++T I   H+  + G  + +     +  + L   G   +  DD+
Sbjct: 180 ESDASFL-HL-QPMATIVTNIDADHMDTYGGSFDVLKDTFVQFLQKLPFYGLAVVCGDDA 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +   +G + + ++G +++ D +    +Q   QS   V    K  E +   I  
Sbjct: 238 NIREIMPR---IG-RPLITYGFNEDNDIRAVDIEQEGMQSHFTVLR--KDREPLRLTINL 291

Query: 291 HMAQNMLMTLGIVSILTAD--VDTAI-KALSVFHPKEGRGKRYRCA----LNQGFFTLID 343
               N+L  L  + I T +   D AI +AL  F    G G+R++      ++ G   L+D
Sbjct: 292 PGLHNILNALAAIGIATDEGVSDAAIARALESF---SGVGRRFQVQGEFDIDGGNVKLVD 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           + Y  +P  ++A I       P    RR+ ++            F  D  +VLS
Sbjct: 349 D-YGHHPKEVEATIKAARASHPD---RRLVMMFQPHRFSRTRDCFD-DFVDVLS 397


>gi|229815105|ref|ZP_04445442.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
 gi|229809335|gb|EEP45100.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
          Length = 474

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           T +A  G+ GKTTT  M+   L  ++   +  IG      G          D ++ + E 
Sbjct: 118 TTVACAGTHGKTTTSSMVATMLDRMELDPSFLIGGVVEGYGTNGKNG----DGEYFVVEA 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-N 226
             S   +  FL   + PH+ ++T I   H+ ++  +E+I          + + GT+ +  
Sbjct: 174 DES---DSSFL--YLDPHVVIVTNIEADHMDHYDSLEQIEETFCTFMGLVGEDGTVIVCG 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEV- 283
            D    EL ++       +T++++G+    D  L     +      +      G   EV 
Sbjct: 229 EDPRLVELARSCG-----RTVFTYGEGDGMDVCLNPAATRHAFGSDFTVTLPDGSKREVS 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + +  G H   N    L    +L  + + A +ALS F   EG  +R+         TL+D
Sbjct: 284 IKNNPGRHNMLNATAALTAAYVLGLNTERAAEALSTF---EGARRRFTQVGEVRGVTLVD 340

Query: 344 ESYNANPASMKAAIS 358
           + Y  +P  ++A ++
Sbjct: 341 D-YGHHPTEVRATLA 354


>gi|195978758|ref|YP_002124002.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229620432|sp|B4U4S2|MURC_STREM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195975463|gb|ACG62989.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 40/283 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T + + G+ GKT+T  +L+  L  +  T   IG    H            D  + +FE  
Sbjct: 104 TSLGVAGAHGKTSTTGLLSHVLKHMTATSYLIGDGTGHGAA---------DARYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P  ++IT I   H   F+G++++ +A  +  + ++K   +F+  +
Sbjct: 153 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQVKK--ALFVYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           D   EL K  S A     IY +G     DF      + +  S  +V+ +G ++   H   
Sbjct: 208 DE--ELRKISSPA----PIYYYGFEDTNDFVAFDITRTTNGSDFKVKHKGHAIGQFHVPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESY 346
            G H   N    +  + I   D+    + L  F    G  +R+    +N    T+I + +
Sbjct: 262 YGRHNILNATAVIANLFIAGFDMKLVAEHLKSF---SGVKRRFTEKVIND---TIIIDDF 315

Query: 347 NANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
             +P  + A +    Q            PH   R IA+L D  
Sbjct: 316 AHHPTEIIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFA 358


>gi|290476452|ref|YP_003469357.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
 gi|289175790|emb|CBJ82593.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 148/386 (38%), Gaps = 83/386 (21%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T + A    +       IPV    ++L  L       R R     IAI G+
Sbjct: 77  RGASVVVASTAISADNPEIIAAREARIPVIRRAEMLAEL------MRYRHG---IAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174
            GKTTT  M       I   YA  G               P  V+ G+ +   +H  LG 
Sbjct: 128 HGKTTTTAM-------IAGIYAQAGLD-------------PTFVNGGLVKAAGTHARLGT 167

Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
            R+L            HL +P +AVIT I   H+  + G  E +          L   G 
Sbjct: 168 SRYLIAEADESDASFLHL-QPMVAVITNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGR 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
             +  DD   + L  +   +G + I ++G S+ AD ++  ++Q + Q +  +       +
Sbjct: 227 AVMCIDDPVVKELIPR---IG-RYITTYGFSEEADIRITHYEQKAAQGFFTISRDDLPEL 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332
            VV +  G H A N    + + +    +    + +L+ F   +G G+R+           
Sbjct: 283 HVVLNAPGRHNALNATAAVAVATEEGINDAAILASLAEF---QGTGRRFDFLGEFSLKHI 339

Query: 333 ALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMG 382
              +G   L+D+ Y  +P  + A I           ++    PH   R   +  D   + 
Sbjct: 340 NGKEGRVMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANI- 397

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408
            LSQ   +D+  +L +Y+     + G
Sbjct: 398 -LSQ---VDVLLMLDVYSAGETPIPG 419


>gi|146279501|ref|YP_001169659.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557742|gb|ABP72354.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1279

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 158/398 (39%), Gaps = 47/398 (11%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA------ITGSVGKTTTKEMLTIALS 131
           + S +IP   V+        + V  R R  A +IA      + GS GK+T   ML   LS
Sbjct: 69  VASPAIPETHVERRAARRAGIPVKTRARMLAELIADRLTICVAGSHGKSTVTAMLIHILS 128

Query: 132 SIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +  K    Y    S+ +   VP  L     D  F + E   +H      L H +  H A+
Sbjct: 129 AAGKDDFGYMLGASFADPGIVPARLGA--PDAPF-VTEACEAHGA----LAHWLPSH-AI 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLK-AKSHALGIKT 246
           +T +   H  ++ G   +  A +     L   G      DD    ++L+ A+  AL    
Sbjct: 181 LTNLDDDHADHYGGPSGLRRAFSAFLSRLPPEGRAVACGDDLDVVDILREARCAAL---- 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305
            Y F + +NA   LR   Q  + S   V L G  +  +   + G H   N L  LG+   
Sbjct: 237 TYGF-RDENA---LRAV-QAGDGS-ATVFLHGTELGALSLAVPGRHNLLNALAALGMALT 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     TA  AL+ FH    R  R    +  G    I + +  +P  + A+I+VL + + 
Sbjct: 291 LGIGFRTATGALADFHGIARRLSR----IGTGSQPRIFDDFAHHPTEIAASIAVLRETT- 345

Query: 366 HGEGRRIAVLGDM--CEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             +GR IA+L       +  ++  F       D + +L +  +     +G    AL DA 
Sbjct: 346 --QGRLIAILEPQLHSRVSRMALRFAQALGAADRSYILPVAALGEAVQAGNGDAALADAC 403

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            RS+     +   M  L L ++  L   D +VV +  S
Sbjct: 404 -RSVGLSCQHVSGMPELLLRLKDDLQGDDTLVVMAGAS 440


>gi|330973386|gb|EGH73452.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGHVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLAEANV 395


>gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 31/273 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++   +A + +  T+  IG   N  G    L         G   + 
Sbjct: 31  IAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGANARLGS-------GEHIVV 82

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L  P +AV+T I   H+  +     ++  A  +    +   G   L  
Sbjct: 83  EADESDASFLNLL--PVMAVVTNIDADHMETYGHDFGKLKKAFVDFLHRMPFYGAAILCT 140

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEV 283
           DD     +  +        I S+G +++A+ +    +    Q    VQ +       MEV
Sbjct: 141 DDPAVRDICEQVTC----PITSYGFNEDAEVRAVNVRAVGGQMHFTVQRRNGVVLPDMEV 196

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFF 339
           V +  G H   N L  + +   L       +KAL+ F   +G G+R++     AL QG  
Sbjct: 197 VLNLPGLHNVLNALSAIAVAVELNIPDAAVVKALAEF---KGVGRRFQRYGDLALPQGGT 253

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + + Y  +P  M A ++      P   GRR+
Sbjct: 254 VTVIDDYGHHPVEMAATLAAARGAFP---GRRL 283


>gi|229588491|ref|YP_002870610.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
 gi|259509778|sp|C3KCT1|MURC_PSEFS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229360357|emb|CAY47214.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 26/258 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD     +  +      +   ++G S++AD +    +Q   Q++  V +   + ++V  +
Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEDADVRAINVRQEGMQTYFTVLRPDREPLDVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F    G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNSLATICIATDEGVSDEAIVEGLSRF---AGVGRRFQVYGQLPVEGGDVMLV 341

Query: 343 DESYNANPASMKAAISVL 360
           D+ Y  +P  + A I  +
Sbjct: 342 DD-YGHHPTEVAAVIKAV 358


>gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
          3_1_6]
 gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
          3_1_6]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
          + IDSR   P   F A+ G   DG  FI  AV +GAG VV   +   + G   +
Sbjct: 18 LCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPESAGNCGEAEV 71


>gi|255264765|ref|ZP_05344107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
 gi|255107100|gb|EET49774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
          Length = 468

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      ++A+TGS GK+TT  ++   L+ + +     G    +IG  +      +D + 
Sbjct: 115 RFDVAPQVVAVTGSNGKSTTSALIHHILTEVGRPTQLAG----NIGRGVLDIDPAIDGEV 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            + EL        R LT    P IAV T ++P HL   +G+    +AK  +F
Sbjct: 171 VVLELSSYQTDLARSLT----PDIAVFTNLSPDHLDRHAGMGGYFAAKRRLF 218


>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
 gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIF--LNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       G  +  LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGEKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+  E     + A    T+ ++G    +D   +     S  +   +    +S+ V    
Sbjct: 241 DDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|297587603|ref|ZP_06946247.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
 gi|297574292|gb|EFH93012.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 146/375 (38%), Gaps = 46/375 (12%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           + A +R+    I ++GS GK+TT  M+   L   K         +  I +   L  +  +
Sbjct: 104 LGALMRNYKYSIGVSGSHGKSTTTSMIAKILIDAK--------VDPSILLGGKLDEIQGN 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V  G  E  ++   E +       P +A+I  I   HL  +  +  I +      + LE+
Sbjct: 156 VHCGNSEYMLTEACEYKANILNYYPSMAIILNIDEDHLDYYKDLNHIVATFIGYMKNLEE 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--WKQCSEQSW-MEVQ 275
                +N DD   E L   SH  G   I +FG +++ AD+ +    + +    ++ +  +
Sbjct: 216 NSKAIINIDDKNCEPL--LSHIKG--EIITFGIENEKADYNIHDITFNENGNPTFVISSE 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              K  E     IG H   + +  +        D+DT  K +  +         +R    
Sbjct: 272 KFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYQ------NLHRRMET 325

Query: 336 QGFF--TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGEL 384
            GF+    +   Y  +P  +K  +  L +           PH   R   +L D       
Sbjct: 326 VGFYKGCEVKTDYGHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDD------F 379

Query: 385 SQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSL 441
           + +F+ D  EV+   +Y     + S  H   L + L ++ ++  Y +T +    +++S +
Sbjct: 380 ANAFY-DCDEVIVTEIYAAREKFDSSIHSTDLVEKLVKNGVNAKYYKTFEEARDYLRSKV 438

Query: 442 VDGDVVVVKSSNSCG 456
            D D+V+   +  CG
Sbjct: 439 SDNDIVL---TTGCG 450


>gi|307266535|ref|ZP_07548068.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918454|gb|EFN48695.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +++D+V +     I V G         ++  A R  SKA I AITG+ GKTTT  +L 
Sbjct: 78  VPIDSDIVKTAQEKKIEVLG---------EVEFAYRF-SKAPIYAITGTNGKTTTTSLLG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +  +     G    +IG PL  A M   + DF + E+    L  I+      +P I
Sbjct: 128 EMFKNAGRKVYVAG----NIGYPLIYAVMEATEGDFIVAEISSFQLETIKEF----KPKI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + I  I P HL+     E     K  IFE         LN+DD     LK K+ 
Sbjct: 180 SCIINITPDHLNRHKTFESYRDIKGRIFENQRGDEYTVLNFDDPVTWSLKNKAK 233


>gi|197105784|ref|YP_002131161.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
 gi|254766016|sp|B4RFG2|MURC_PHEZH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196479204|gb|ACG78732.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
          Length = 477

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 108/279 (38%), Gaps = 25/279 (8%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I P HL ++   E +  A  +  E +   G   +  D    + + A+      +
Sbjct: 180 VAVVTNIDPEHLDHYGDFEAVKKAFQDFVENIPFYGFAAVCLDHPEVQAMTARVEN---R 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------EVVHHGIGYHMAQNMLMT 299
            + ++G +  A+ +    +   E +   V +Q +        +++    G H  QN L  
Sbjct: 237 RLVTYGVNPQAEVRAHNIRMGPEGARFSVVIQPRDGGFISFDDLLLPMAGQHNVQNALAA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L    D   K L+ F    G  +R+      G   ++D+ Y  +P  + + +  
Sbjct: 297 IAVARELGVSPDAIRKGLAAFG---GVKRRFTTTGVAGGVRVVDD-YGHHPVEIASVLKA 352

Query: 360 LSQISPHGEGRRIAVLGD--MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVL 412
              +S   EG+ IAV+       + +L + F       D   V  +Y      + G    
Sbjct: 353 ARAVS---EGKVIAVVQPHRYTRLRDLFEDFCACFNDADTVIVADVYAAGEAPIEGVGKE 409

Query: 413 ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L + L R  H  V       GL   ++     GD+VV+
Sbjct: 410 SLVEGLRRYGHRRVLPLPAPAGLAALVREEAHPGDLVVL 448


>gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 25/207 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HI 147
           L +    A L +   +  + G+ GKT+T  MLT+AL    +  ++A  G  N      H 
Sbjct: 113 LRRAEALAALMADHRVACVAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGANAHH 172

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G            D G+F +  +   +  FL  +  P +AV+T + P HL +    E   
Sbjct: 173 G------------DGGVF-VAEADESDGSFL--VFAPSVAVVTNVEPDHLDHHGTAEAYT 217

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQ 265
                  E +E  G +    DD+   LL  ++ A G++ +  +G    AD   R   ++ 
Sbjct: 218 EVFQRFVERIEPGGVLIACADDAGAALLADQAEAAGVR-VRRYGHEVTADGDARMVGYRP 276

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                 + V++ G  ++V     G HM
Sbjct: 277 EHGSGVVTVEVSGDRLDVQVAVPGEHM 303


>gi|42783006|ref|NP_980253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 10987]
 gi|60390050|sp|Q732F6|MURD_BACC1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42738933|gb|AAS42861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10987]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 29/262 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNXTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K      ++       + +     L  K  +VV
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTK------EIEDGACIKDNA-----LYFKGEKVV 268

Query: 285 HHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             G     G H  +N+L  + I  +L    +     L  F   + R +      N+ F+ 
Sbjct: 269 EVGDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY- 327

Query: 341 LIDESYNANPASMKAAISVLSQ 362
             ++S   N  + + A+S  +Q
Sbjct: 328 --NDSKATNMLATEKALSAFTQ 347


>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
 gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
          Length = 437

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 32/254 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T  ++  +   +   T    G    +IGVP  L  +    D  + EL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALDLLEQGADLYVLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N DD
Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDNAE---LAVVNRDD 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                   ++       + +FG    +D Q    +    ++W+    Q          +G
Sbjct: 218 Q-------ETFPDTETPLVTFG----SDEQAYGLEADGNRTWLLDHGQRVIASDELKLVG 266

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346
            H   N L+ L ++     D   ++ AL  +      G  +RC   A N+G    +++S 
Sbjct: 267 KHNLANALVVLALLKAADVDYHKSLNALKTY-----TGLTHRCQVVADNRG-VKWVNDSK 320

Query: 347 NANPASMKAAISVL 360
             N AS  AA+S L
Sbjct: 321 ATNIASTMAALSGL 334


>gi|307265431|ref|ZP_07546987.1| domain of unknown function DUF1727 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919545|gb|EFN49763.1| domain of unknown function DUF1727 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 133/351 (37%), Gaps = 56/351 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP-----VDV 160
           K   + ITG+ GKTTT  ++   L++  K+        N   G+   L +       +  
Sbjct: 47  KNNKVLITGTNGKTTTSGLIASILTTAGKSVVHNKEGANMKTGIATALIKSSNFLGNLQK 106

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  +FE+  +++     +   V+P+I VIT      L  +  ++       +    L + 
Sbjct: 107 DATVFEVDEANM---PIVIEDVKPNIVVITNFFRDQLDRYGELDTTVEKVKKALLNLPQD 163

Query: 221 GTIFLNYDDSFF----ELLKAKSHALGI--------------------------KTIY-- 248
             + LN D+ F     + +K+K    GI                          K IY  
Sbjct: 164 SIVLLNADEPFTASIGDEIKSKVFYYGIEDNIEGINSSSFEQKYCPICAHKYEYKKIYYG 223

Query: 249 --------SFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   + GK + N  F+        +     +  + K   V    IG +   N+L  
Sbjct: 224 QLGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLYNVYNLLAA 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +L  D  T +KA+  + P EGR ++ +    +    LI      NP   ++ +++
Sbjct: 284 ISAGILLNIDFSTILKAIESYWPIEGRLQKTKIKSKRTIINLI-----KNPIGFESTLNM 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           LSQ +       I++  +  +  ++S  + ++L   LS   ++++  SG  
Sbjct: 339 LSQFN-KPLNLLISINDNYADGRDVSWLWDVNLESFLSKTKVNYIVTSGLR 388


>gi|260687887|ref|YP_003219021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
 gi|260213904|emb|CBE05944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP ++ I  I   HL+    +E+   AKA IF          LNYDD   + L  K +A 
Sbjct: 177 RPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDFCVLNYDDEVVKSLADKCNA- 235

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             K IY F ++K  N    L       +       L    + +     G H  +N +  +
Sbjct: 236 --KVIY-FSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVSLP----GGHNLENCMAAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            I  +   D++     L  F   E R +  R   N      +++S   NP S   AI
Sbjct: 289 AIAYVCKIDLEVTKDVLMTFKGVEHRQEFVR---NLDNVIYVNDSKGTNPDSTIKAI 342


>gi|168204898|ref|ZP_02630903.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
 gi|170663533|gb|EDT16216.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
          Length = 441

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T++V P + V+T+I+  H++     IEEIA  K     G+ 
Sbjct: 137 VDYAVLEVG---LGGRLDATNVVIPEVVVLTSISLDHMNILGNTIEEIAKEKC----GII 189

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           K+G   ++Y  ++   E++K + + LG    + +    KN      K  Q      +EV 
Sbjct: 190 KSGVPVISYPQEEKALEVIKERCNELGCNLEVVNTEDIKNIIIDKEKHVQ-----KIEVS 244

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTL 300
           L+ + +E+    +G H  +N L+ L
Sbjct: 245 LEDEILEIDLGLLGDHQVKNFLVAL 269


>gi|289422422|ref|ZP_06424265.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156994|gb|EFD05616.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 119/303 (39%), Gaps = 45/303 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+   +  +K    +        V   L+ +  +V  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSTIFNHAEKDPTIL--------VGGNLSTIGGNVRIG 149

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  ++   E    FL     P I+++  I   HL  FSG++EI ++  +  + L + G
Sbjct: 150 NSEHFITEACEYVDSFLN--FNPFISLVLNIEEDHLDYFSGLDEIKASFNKFGKLLPEDG 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N D         K     +K ++  FG+    D  +       E  +    L+ K 
Sbjct: 208 FFIINGDSE-----NTKDITFDVKASVIRFGQKDTNDAIISDI-SYDENGYARFNLKYKG 261

Query: 281 MEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +    +   G H   N    +    +   D+DT  + +  +   +G G+R+     +G
Sbjct: 262 AALGRFDLSIYGLHNVYNATAAIVAAIVSNIDIDTIKEGIKEY---KGVGRRFE---KKG 315

Query: 338 FF--TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQ 386
            +   L+ + Y  +P  +KA ++    +          PH   R  A+        E SQ
Sbjct: 316 EYKGALVIDDYAHHPTEIKATLASAKNLKKDKMWVVFQPHTYTRTKALF------DEFSQ 369

Query: 387 SFH 389
           +FH
Sbjct: 370 AFH 372


>gi|146342500|ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. ORS278]
 gi|146195306|emb|CAL79331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bradyrhizobium sp.
           ORS278]
          Length = 466

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 16/154 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  IAITG+ GK+TT  ++   +         +  Y+  +G  +  A + ++       +
Sbjct: 114 APFIAITGTNGKSTTTALIAHLMR--------VAGYDTQMGGNIGTAILSLEPP----RM 161

Query: 168 GMSHLGEIRF----LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           G  H+ E+      LT  + P I ++  ++  H+     IE  A+ K  +  G++  GT 
Sbjct: 162 GRVHVIEMSSYQIDLTPSLDPSIGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPQGTA 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +  DD F   +  +    G + +    K+  AD
Sbjct: 222 IVGVDDGFCRAIADRLDQAGKRVVRISVKNPLAD 255


>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +++D+V +     I V G         ++  A R  SKA I AITG+ GKTTT  +L 
Sbjct: 78  VPIDSDIVKTAQEKKIEVLG---------EVEFAYRF-SKAPIYAITGTNGKTTTTSLLG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +  +     G    +IG PL  A M   + DF + E+    L  I+      +P I
Sbjct: 128 EMFKNAGRKVYVAG----NIGYPLIYAVMEATEGDFIVAEISSFQLETIKEF----KPKI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + I  I P HL+     E     K  IFE         LN+DD     LK K+ 
Sbjct: 180 SCIINITPDHLNRHKTFESYRDIKGRIFENQRGDEYTVLNFDDPVTWSLKNKAK 233


>gi|319789776|ref|YP_004151409.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
 gi|317114278|gb|ADU96768.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
          Length = 446

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 126/338 (37%), Gaps = 55/338 (16%)

Query: 56  FILHAVQ--KGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           FI H+ +  KGA +V+        N ++V +   L IPV    DV+  + +L        
Sbjct: 49  FIGHSPENVKGADVVIHSSAVKPSNPEIVEA-KKLGIPVIPRADVVSDIMRLKEG----- 102

Query: 107 KATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPV 158
               IA+ G+ GKTTT  M+   L S        +      +G  N  +G    +  +  
Sbjct: 103 ----IAVGGTHGKTTTSSMIATILHSAGTSPTILVGGRLPFLGGDNAALGSGKWIV-IEA 157

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D   G F L ++             P ++VIT +   HL  +   EEI  A       + 
Sbjct: 158 DESDGTF-LKLT-------------PTLSVITNVDNDHLDFYGSPEEIDKAFTAFANRVA 203

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G +FL  +      +  K +    K  Y F   + ADF   +  Q    S   V+ +G
Sbjct: 204 FYGKVFLCIECPRVRKISPKVYKR--KETYGF---EGADFTAEEVTQVGLSSIFTVRYKG 258

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           K +  V   + G H   N L  + +          A +AL  F     R +         
Sbjct: 259 KKLGKVRLNVPGKHNVLNALGAIAVALETGVPFKEAAEALGQFRNASRRMELKGTVKGIT 318

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           FF    + Y  +P  +KA+   +    P+   RR+ VL
Sbjct: 319 FF----DDYGHHPTEIKASYEAIKSAFPN---RRVVVL 349


>gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276]
 gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276s]
 gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11222]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 91  VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 146 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 200 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 245

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 246 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 306 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 333


>gi|295698678|ref|YP_003603333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
           pediculicola USDA]
 gi|291157135|gb|ADD79580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
           pediculicola USDA]
          Length = 439

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 29/250 (11%)

Query: 110 IIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II+ITGS GK+TT  +LT IA    KK    +G   N IGVP+ L  +  D D  I EL 
Sbjct: 109 IISITGSNGKSTTASVLTEIA----KKANLKVGLGGN-IGVPV-LELLNYDYDIYILELS 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
              L     +T  ++   AVI  I+  H+  +  G+ +  SAK +I++  +      +N 
Sbjct: 163 SFQLE----ITSTLKSIGAVILNISENHMDRYPFGMYQYLSAKLKIYDFAKNC---VINI 215

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D+     +     +  +   SFG + + D++L   K+ + Q + +  +  K +++    
Sbjct: 216 MDN-----RIWPKEIDKRNFLSFGIN-SGDYRLNT-KKNTIQRFEKDLIHIKFIKI---- 264

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H   N L TL +  I+   ++ ++  +S +    G   R +    +     I++S +
Sbjct: 265 IGQHNHMNFLATLCLSEIIGIPINISLFVISRY---SGLPHRLQVVHKKNGVIWINDSKS 321

Query: 348 ANPASMKAAI 357
            N  S  AA+
Sbjct: 322 TNIESTIAAL 331


>gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
 gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
          Length = 487

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 108/316 (34%), Gaps = 46/316 (14%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           + GHS  ++P G                 F A+ GP  DG  FI  A+ +GA  VV    
Sbjct: 24  VAGHSAKVLPGGV----------------FVAVAGPVADGERFIPDALARGAAHVVAGPG 67

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            V   G+ +  V   +         A      R    + AITG+ GKTT   ++    ++
Sbjct: 68  TVLPAGATARLVVAENPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATA 127

Query: 133 IKKTYACIG---------SYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIR 176
             +    +G         S N  +  P  L       A      D  + E     + + R
Sbjct: 128 AGRKVGVLGTVAYRWPGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDR 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSF-FEL 234
                      + T +   HL     +E    AKA +F   L       LN+DD F   L
Sbjct: 188 LAGLAF--AAGIFTNLTQDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRL 245

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           L+    ALG    Y    +  A F             E   ++V+    +  V     G 
Sbjct: 246 LEEFPQALG----YGL-TAPPAGFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGR 300

Query: 291 HMAQNMLMTLGIVSIL 306
           H AQN+L  +G   +L
Sbjct: 301 HNAQNVLAAMGAALVL 316


>gi|16128081|ref|NP_414630.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89106971|ref|AP_000751.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157159559|ref|YP_001456877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli HS]
 gi|170021556|ref|YP_001726510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ATCC 8739]
 gi|170079727|ref|YP_001729047.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492751|ref|ZP_03000021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194439413|ref|ZP_03071490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|238899489|ref|YP_002925285.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|253774882|ref|YP_003037713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037503|ref|ZP_04871580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|254160210|ref|YP_003043318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli B str. REL606]
 gi|256025402|ref|ZP_05439267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           sp. 4_1_40B]
 gi|297519210|ref|ZP_06937596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli OP50]
 gi|300931785|ref|ZP_07147085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|300949894|ref|ZP_07163857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300955954|ref|ZP_07168287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|301028571|ref|ZP_07191801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|301646400|ref|ZP_07246282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|307136689|ref|ZP_07496045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli H736]
 gi|312970182|ref|ZP_07784364.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|331640541|ref|ZP_08341689.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331650985|ref|ZP_08352013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|127537|sp|P14900|MURD_ECOLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|40856|emb|CAA38865.1| UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438) [Escherichia coli]
 gi|42060|emb|CAA35933.1| unnamed protein product [Escherichia coli]
 gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|21321969|dbj|BAB96656.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K12 substr. W3110]
 gi|157065239|gb|ABV04494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           HS]
 gi|169756484|gb|ACA79183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ATCC 8739]
 gi|169887562|gb|ACB01269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487950|gb|EDU63053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194421672|gb|EDX37682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|226840609|gb|EEH72611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|238863752|gb|ACR65750.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|242375924|emb|CAQ30605.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BL21(DE3)]
 gi|253325926|gb|ACT30528.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972111|gb|ACT37782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli B str. REL606]
 gi|253976320|gb|ACT41990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli BL21(DE3)]
 gi|260450705|gb|ACX41127.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           DH1]
 gi|284919868|emb|CBG32923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           042]
 gi|299878382|gb|EFI86593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|300317174|gb|EFJ66958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|300450726|gb|EFK14346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300460445|gb|EFK23938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|301075370|gb|EFK90176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|309700299|emb|CBI99587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ETEC H10407]
 gi|310337680|gb|EFQ02791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|315134782|dbj|BAJ41941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli DH1]
 gi|315616133|gb|EFU96752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           3431]
 gi|323939872|gb|EGB36072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E482]
 gi|323960034|gb|EGB55680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H489]
 gi|331040287|gb|EGI12494.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331051439|gb|EGI23488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|332341420|gb|AEE54754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Escherichia
           coli UMNK88]
 gi|333011476|gb|EGK30890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-272]
 gi|333021719|gb|EGK40968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-227]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 179/460 (38%), Gaps = 69/460 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P  L  +  + +  + EL    L     L  
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVLELSSFQLETTSSLQA 172

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 173 VA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D+ L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L     H +G    +LG              D + +    N  +V L  F     +
Sbjct: 330 ALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLNGDNVRLYCFGRDGAQ 376

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 377 LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR++   +AF A      D   +I  A+Q+GA  V+V        G   + V  +D
Sbjct: 32  LRVDSRAVCAGDAFVAYAVDSADSRAYIADALQRGAAAVLVQAGGEFPGGGPVLQVPELD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            + G +         R    ++ ITG+ GKTTT   +  ALS      A IG+     G+
Sbjct: 92  QLAGHIASAWYGEPSRDM-LMVGITGTNGKTTTSHWVAGALSGSGTRCAIIGTLGT--GL 148

Query: 150 PLTLA 154
           P  L+
Sbjct: 149 PGQLS 153


>gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70]
 gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 91  VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 146 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 200 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 245

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 246 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 306 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 333


>gi|110804152|ref|YP_687672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 5 str. 8401]
 gi|110613700|gb|ABF02367.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri 5
           str. 8401]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 46/353 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L+ L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALVALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA++ L     H +G    +LG              D + +    
Sbjct: 314 RWINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYL 360

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           N  +V L  F     + A  R      +ETM+     +   +  GD+V++  +
Sbjct: 361 NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPA 413


>gi|326390357|ref|ZP_08211916.1| domain of unknown function DUF1727 protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993634|gb|EGD52067.1| domain of unknown function DUF1727 protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 133/351 (37%), Gaps = 56/351 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP-----VDV 160
           K   + ITG+ GKTTT  ++   L++  K+        N   G+   L +       +  
Sbjct: 47  KNNKVIITGTNGKTTTSGLIASILTTAGKSVVHNKEGANMKTGIATALIKSSNFLGNLQK 106

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  +FE+  +++     +   V+P+I VIT      L  +  ++       +    L + 
Sbjct: 107 DATVFEVDEANM---PIVIEDVKPNIVVITNFFRDQLDRYGELDTTVEKVKKALLNLPQD 163

Query: 221 GTIFLNYDDSFF----ELLKAK--------------------------SHALGIKTIY-- 248
             + LN D+ F     + +K+K                          +H    K IY  
Sbjct: 164 SIVLLNADEPFTASIGDEIKSKVFYYGVEDNIEGINSSSFEQKYCPICAHKYEYKKIYYG 223

Query: 249 --------SFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   + GK + N  F+        +     +  + K   V    IG +   N+L  
Sbjct: 224 QLGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLYNVYNLLAA 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +L  D  T +KA+  + P EGR ++ +    +    LI      NP   ++ +++
Sbjct: 284 ISAGILLNIDFSTILKAIESYWPIEGRLQKTKIKSKRTIINLI-----KNPIGFESTLNM 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           LSQ +       I++  +  +  ++S  + ++L   LS   ++++  SG  
Sbjct: 339 LSQFN-KPLNLLISINDNYADGRDVSWLWDVNLESFLSKTKVNYIVTSGLR 388


>gi|325275012|ref|ZP_08141006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           sp. TJI-51]
 gi|324099851|gb|EGB97703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           sp. TJI-51]
          Length = 244

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIAI+GS  K+T   ++    +   K  A  G    ++G P  L  +  DV+  + 
Sbjct: 109 AKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGG----NLGTP-ALDLLADDVELYVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 164 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           N  D+    L  +      +  +SFG ++  DF+
Sbjct: 217 NRQDALSRPLPVEG-----RPCWSFGLNQ-PDFK 244


>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens SBW25]
 gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens SBW25]
          Length = 448

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AI+GS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAISGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH +   +A +  ++  H+  +SG+     AK  IF G ++   + 
Sbjct: 161 MELSSFQLET----THDLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N  D+    L  +         ++FG SK  DF+    ++   + ++  + Q
Sbjct: 214 VNRQDALSRPLMGEG-----LPCWTFGLSK-PDFKAFGIREEHGEKYLAFEFQ 260


>gi|229111382|ref|ZP_04240935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
 gi|228672158|gb|EEL27449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 22/194 (11%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V K  G+   N  +VA+I    IP+         + ++ +A R+ S+A  + ITGS GKT
Sbjct: 76  VVKNPGIPYSNPILVAAIEK-QIPI---------VTEVELAYRI-SEAPFVGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-T 179
           TT  MLT  +    + +  I     +IG   T+A   V  D    E+ ++ L   + +  
Sbjct: 125 TTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKENEVVVTELSSFQLMGV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +P IA    +  AHL      +E   AKA IF+   +     +N DD+  +++   +
Sbjct: 177 ELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSVINADDA--DVMALSA 234

Query: 240 HALGIKTIYSFGKS 253
           ++ G K ++S  K 
Sbjct: 235 YSKGQKILFSTTKE 248


>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS195]
 gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS195]
 gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS678]
          Length = 439

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 136/361 (37%), Gaps = 67/361 (18%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITGS GK+T    +T  +  + +      +   +IGVP  L  +  + D  + E
Sbjct: 108 KPCVIGITGSNGKST----VTTLVGEMAREAGIAVAVGGNIGVP-ALDLLHENADLFVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A    I+  H+  +S I     AK  ++   +++  +  N
Sbjct: 163 LSSFQLET----THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFN 215

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
            DD      E +   S  L       +G S +     + +   SE     EV L      
Sbjct: 216 RDDKLTVPPEPMNQNSFGLAAPEADEWGISDS-----KIYHGSSEIMPITEVSL------ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT 340
                IG H   N+L  + +V ++  D     K    F      G  +RC +   +   T
Sbjct: 265 -----IGSHNHANLLAAMALVDVVGVDKQVMAKVARSF-----TGLSHRCEVVGIKNGVT 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDLAE 394
            +++S   N   + A ++ L  +S H        LGD+  +      G   +   + LA+
Sbjct: 315 YVNDSKATN---VGATVAALDGLSDH--------LGDIILIAGGDGKGADFKPLGVALAK 363

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           V  L  +      G  + ALKD   R       ETM             GD+V++  S +
Sbjct: 364 VTHLITLGR---DGKKIAALKDGAVR------VETMAAAVAKAAELATSGDIVLL--SPA 412

Query: 455 C 455
           C
Sbjct: 413 C 413


>gi|315498851|ref|YP_004087655.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Asticcacaulis
           excentricus CB 48]
 gi|315416863|gb|ADU13504.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Asticcacaulis
           excentricus CB 48]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 29/159 (18%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           ++PV G D  L A    A+  + R K   +AITG+ GK+TT  ++   L +  +      
Sbjct: 113 NVPVIG-DIELFARTLNALPEKQRPK--TVAITGTNGKSTTTALIGHILKAAGR------ 163

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF---------LTHLVRPHIAVITTI 192
             + HIG          ++  G+ +L   H G I           LT   RP +AV+   
Sbjct: 164 --DAHIGG---------NIGIGVLDLPEMHAGTIYVIETSSYQLDLTQTFRPDVAVLMNF 212

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +P HL     ++    AK  IF       T  +  DD +
Sbjct: 213 SPDHLDRHGDMDGYIKAKKRIFLNQTAHETAVIGTDDEW 251


>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans
          DSM 16841]
 gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans
          DSM 16841]
          Length = 493

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
          V  I  DSR IAP+  F  + G   DGH +I  AV+K A ++V+  +  A+    +I V 
Sbjct: 23 VRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVEKEASVIVLEKEEEAAQIPENITVL 82

Query: 87 GVD 89
           V+
Sbjct: 83 KVE 85


>gi|163738713|ref|ZP_02146127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388041|gb|EDQ12396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
          Length = 465

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 23/138 (16%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD- 161
           R      I+A+TGS GK+TT  +L   L    +     G+          + R  +D+D 
Sbjct: 115 RFDQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGN----------IGRGVLDIDP 164

Query: 162 ---FGIFELGMSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214
               GI  L +S      + T L R   P +AV T ++P HL   +G+    +AK  +F 
Sbjct: 165 PGSGGIVVLELSS-----YQTDLARALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFA 219

Query: 215 EGLEKTGTIFLNYDDSFF 232
           EG      I ++ D+  +
Sbjct: 220 EGGPDRAIIGVDEDEGLY 237


>gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13]
 gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9768]
 gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11074]
 gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9301]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 91  VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 146 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 200 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 245

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 246 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 306 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 333


>gi|297569452|ref|YP_003690796.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925367|gb|ADH86177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 497

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 43/247 (17%)

Query: 21  IVPQGFVNGISIDSRSIAP---------QEAFFAIKGPH----YDGHDFILHAVQKGAGL 67
           +V QG    +S   R++AP         +   +   G H    + G D IL  +  G  L
Sbjct: 37  LVKQGVRISVSEGGRAVAPASRMVQWLQERGVYCELGGHSPQLFAGVDVIL--LSPGIPL 94

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEML 126
            +   D   + G   +P+ G         +LA+A   LR+   +IA+TG+ GK+T   ++
Sbjct: 95  DIPALDAARAAG---VPIIG---------ELALAPEYLRTP--VIAVTGTNGKSTVTTLV 140

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L +  +     G    ++G PL   LA  P + D+ + E+    L      +    P
Sbjct: 141 GELLRAAGRNVFVGG----NLGTPLCEYLA-GPQEADWAVLEVSSFQLDSAGKFS----P 191

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+  I+P HL  +      A++K  I     +     +N DD   E+L+  +     
Sbjct: 192 DIAVLLNISPDHLDRYPDYAAYAASKWRIVANQGREQWAVINRDDP--EILRLLAAGPPA 249

Query: 245 KTIYSFG 251
             ++ FG
Sbjct: 250 SRVFGFG 256


>gi|317138866|ref|XP_001816953.2| UDP-N-acetylmuramate--L-alanine ligase [Aspergillus oryzae RIB40]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 39/278 (14%)

Query: 111 IAITGSVGKTTTKEMLTI-----ALSSIKKTYACIGSY--NNHIGVPLTLARMPVDVDFG 163
           IAI+GS GK+TT  M+        LS    + A +  Y  N H+G   +   M V+ D  
Sbjct: 274 IAISGSHGKSTTTSMVAGMLEAGGLSPTTISGAVVTQYGSNAHMG---SGHWMVVEAD-- 328

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                    G +  L  L    I+V+T I   H++ +   E+  +  A+    +   G  
Sbjct: 329 ------ESDGTMVRLPAL----ISVVTNIDSDHITFYGTQEKTRATFAQFVRNVPFYGLA 378

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
            L  DD     +  +      + I ++G S++AD +    +   + S   + ++ +    
Sbjct: 379 VLCIDDPGVRKILPEVQD---RNIVTYGVSEDADVRAENVEYNPQDSTFVLSVRDRRDGT 435

Query: 281 ----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +V + +G H  QN L T  I   L+ ++++   AL  F   +G  +RY      
Sbjct: 436 RRVVGSIVLNVLGLHNVQNALATTAIALELSIELESIRYALGSF---QGTNRRYIHVGEA 492

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
               +ID+ +  +PA +KA  ++  Q    G  R IAV
Sbjct: 493 NGIQIIDD-FGTHPAEIKATQTMAKQA---GARRVIAV 526


>gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC]
 gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC]
          Length = 833

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 121 VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 175

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 176 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 229

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 230 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 275

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 276 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 335

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 336 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 363


>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
 gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 105/274 (38%), Gaps = 43/274 (15%)

Query: 17  HSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP     +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           DD   E     + A    T+ ++G    +D   R
Sbjct: 241 DDPVAEEYMRSTAA----TVVTYGIDVASDIMAR 270


>gi|223041554|ref|ZP_03611755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor 202]
 gi|223017649|gb|EEF16059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor 202]
          Length = 434

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T   + T+     K+    +G   N IGVP  L+ +  D +  +
Sbjct: 103 EAKAPIIAITGANGKST---VTTLTTEMAKQAGIKVGMGGN-IGVP-ALSLLKGDYELYV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L      T+ ++   A I  I+  H+  ++  +EE  +AK  I++  E    I
Sbjct: 158 LELSSFQLE----TTYSLKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAE---NI 210

Query: 224 FLNYDDSF 231
            +N +D  
Sbjct: 211 IVNGEDPL 218


>gi|26246021|ref|NP_752060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli CFT073]
 gi|218687965|ref|YP_002396177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ED1a]
 gi|227885007|ref|ZP_04002812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300981125|ref|ZP_07175371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|301048480|ref|ZP_07195505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|30316043|sp|Q8FL65|MURD_ECOL6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|26106418|gb|AAN78604.1|AE016755_104 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           CFT073]
 gi|218425529|emb|CAR06312.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           ED1a]
 gi|227837836|gb|EEJ48302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300299666|gb|EFJ56051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|300409027|gb|EFJ92565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|307551932|gb|ADN44707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ABU 83972]
 gi|315294717|gb|EFU54060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 153-1]
 gi|324008323|gb|EGB77542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 57-2]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 142/355 (40%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     + + +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLATRVQPGDMVLL--SPAC 414


>gi|88858800|ref|ZP_01133441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
 gi|88819026|gb|EAR28840.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
          Length = 442

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 20/196 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +N I +DSR+  P   +   + PH   Y G   +  A      +++++  +  S   +  
Sbjct: 33  INPIVVDSRAKPPGAEWLTSQAPHLVCYFGS--LSQAPLTEVDMIIISPGIALSTHEVQQ 90

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +    +V+G    + + AR+  K  ++A+TGS GK+T   ++T+A   +      +G  
Sbjct: 91  AIAANVEVIG---DIELFARINDK-PVVAVTGSNGKST---VVTLAARVLADAGYNVGLA 143

Query: 144 NNHIGV-PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            N IG+ PL L    +DV    F L +S   ++   T L  P  A I  +   H+  ++G
Sbjct: 144 GN-IGISPLDLFASEIDV----FVLELSSF-QLETTTSLA-PISATILNLCEDHMDRYAG 196

Query: 203 IEEIASAKAEIFEGLE 218
           ++E  +AK  I+   +
Sbjct: 197 MDEYYAAKQTIYRNAQ 212


>gi|260551075|ref|ZP_05825279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
 gi|260405842|gb|EEW99330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 40/239 (16%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L R  +D+  
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLMGLMAKDAGKKVAIGGN----------LGRPALDLLK 156

Query: 163 GIFELGMSHLGEIRFLT--HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              EL +  L   +  T  HL    +AV+  ++  HL     + E   AK  IF+G++K 
Sbjct: 157 DQPELLVLELSSFQLETTSHL-NAEVAVVLNMSEDHLDRHGNMLEYHQAKHRIFQGVKK- 214

Query: 221 GTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +  N DD+    L       +S  L    +  +G  ++AD  L          W+   
Sbjct: 215 --VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGILRDADGTL----------WLARG 262

Query: 276 LQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           LQ   KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 263 LQRLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKHF-----KGLEHRC 314


>gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           D(s)2923]
 gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           Sweden2]
 gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/150]
 gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/11023]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 91  VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 146 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 200 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 245

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 246 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 306 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 333


>gi|223040209|ref|ZP_03610488.1| Mur ligase middle domain family [Campylobacter rectus RM3267]
 gi|222878570|gb|EEF13672.1| Mur ligase middle domain family [Campylobacter rectus RM3267]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A  KLA    L+    II IT S GKT+ K  L      +K  +AC  +  +      TL
Sbjct: 151 ARKKLASMPELK----IIMITASFGKTSIKNFL---FELLKNDFACRKTPRS----VNTL 199

Query: 154 ARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           A +  DV+          I E G    G+I  +T  + P IA++  I   H+  F  +E 
Sbjct: 200 AGLIQDVNNELAAGTQIYIAEAGARLKGDIAQITEFLSPQIAIVGEIGAQHIEYFKTLEN 259

Query: 206 IASAKAE 212
           I + K E
Sbjct: 260 IRATKLE 266


>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
 gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 33/224 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERSI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +    H     +AV T +   HL     +EE   AK  +F  L
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224


>gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
 gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 133/314 (42%), Gaps = 28/314 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G+ +DSR++AP + F A+ G   DG  FI  AV  GA  V+ + +        ++P  
Sbjct: 22  LSGLQLDSRNVAPGDLFLAVPGVASDGRQFISQAVAAGAVAVLADAETFEIQQDQAVPCV 81

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   +  LA        +   ++ +TG+ GKT+    L  AL+++    A +G+  
Sbjct: 82  ALPELGRRVGTLAARWYGEPGAAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVGTLG 141

Query: 145 ---------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                          + I +   LAR+     D    E+    L + R  +  V   +AV
Sbjct: 142 LGLKGDEQTTGHTTPDPITLQAGLARVRDAGADCVAMEVSSHALDQHRLGSTPV--PVAV 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTI 247
            + ++  HL     +E   +AK+ +F   +      +N DD + + L+   +   G++ +
Sbjct: 200 FSNLSRDHLDYHGDMEAYLAAKSVLFT-RDGVKLAVINCDDPAAYSLIGCLAD--GVRCV 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---S 304
            +FG    A  +       ++    E+ + G  + V     G     N++   GI+    
Sbjct: 257 -TFGDQPGATVRCAAVTFTADGMRAELTVGGDPLTVTLPLFGRFNLSNVMAVAGILHGQG 315

Query: 305 ILTADVDTAIKALS 318
           I TA +  A+ A++
Sbjct: 316 ISTASLGGALAAVT 329


>gi|149198597|ref|ZP_01875641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
 gi|149138312|gb|EDM26721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
          Length = 437

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 111/271 (40%), Gaps = 40/271 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-L 153
           + +L  AA+   +   +AITG+ GKTT  EM    L ++       G    +IG+PL  +
Sbjct: 96  MGELDFAAKFMPQTKFLAITGTNGKTTCTEMTQHTLKNLDYEAVACG----NIGLPLAEV 151

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A      DF + E+      +I  L+ L +   A+I  ++  H+  +   ++   +K  I
Sbjct: 152 ALRDNQPDFAVVEISSY---QIDLLSSL-KFDAAIILNVSEDHMDRYGTFDKYLDSKLMI 207

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +                F  ++          ++S G  K AD  +            E
Sbjct: 208 RKFCH-------------FLAVQQDVECAQADMVFSIGDEK-ADLMIG-----------E 242

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---DVDTAIKALSVFHPKEGRGKRY 330
              Q +  ++      ++   N+   LG++++L +   D+  ++ A+S F   E R + +
Sbjct: 243 ELFQYRDQKIPLPKFSFYGKHNLENALGVLALLNSQKIDLQKSLLAMSDFTCSEHRLEDF 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLS 361
               N  +   +++S + NPAS+  A+   +
Sbjct: 303 ATYQNVLY---VNDSKSTNPASLMVALETFA 330


>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida F1]
 gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           F1]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIAI+GS  K+T   ++    +   K  A  G    ++G P  L  +  D++  + 
Sbjct: 109 AKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGG----NLGTP-ALDLLADDIELYVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 164 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +      +  ++FG + + DF+    ++   + ++  + Q
Sbjct: 217 NRQDALSRPLPVEG-----RPCWTFGLN-SPDFKAFGLREVDGEKYLAFEFQ 262


>gi|333010584|gb|EGK30017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           VA-6]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|332799092|ref|YP_004460591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
 gi|332696827|gb|AEE91284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
          Length = 468

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 25/262 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
           +KA IIA+TG+ GKTTT  ++   L + +K     G    +IG+PL        D D+ +
Sbjct: 122 AKAPIIAVTGTNGKTTTTTLIGEILKNGEKNIILAG----NIGIPLIREVEKAEDKDYLV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L  I       RP I+VI  I   HL+     E+   AKA I E   +     
Sbjct: 178 VEVSSFQLENIMHF----RPKISVILNITKDHLNRHKTFEKYIEAKARILENQIEGDYTV 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LNYDD        K+     K ++    S+  + +   +    +   + ++  GK   V+
Sbjct: 234 LNYDDPIVRTFAKKAKP---KVLFF---SRKEELERGAY---VKNGVIVIRDNGKIYPVL 284

Query: 285 HH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                GI G H  +N L    +  I   +++   + +  F    G   R     N     
Sbjct: 285 KAEELGIKGSHNLENALAAACVAWITRINLNNMAETMKDFR---GVEHRLEFVANIDGIK 341

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            I++S   NP + + AI  L +
Sbjct: 342 FINDSKATNPDAAQKAIEALEE 363


>gi|330877132|gb|EGH11281.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964058|gb|EGH64318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCV 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVEGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A IS +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVISAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|323964816|gb|EGB60283.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           M863]
 gi|327255066|gb|EGE66669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           STEC_7v]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|296101251|ref|YP_003611397.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055710|gb|ADF60448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 188/460 (40%), Gaps = 69/460 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG  + I+  G      +D   +R + P+     +  P   G D +   V++        
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVTPRVMDTRVSPP---GLDKLPEQVERHLGGLNDD 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  M  +  SLS       +++G +      A    +A +IAITGS GK+
Sbjct: 62  WLQAADLIVASPGMALAHPSLSAAADAGVEIVGDIELFCREA----QAPVIAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++     +  K     G    +IG+P   A M +D    ++ L +S   ++   + 
Sbjct: 118 TVTTLVGEMAKAAGKNVGVGG----NIGLP---ALMLLDKGCELYVLELSSF-QLETTSS 169

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           L     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 170 L-HAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPVRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                    SFG +   D+ L   +Q  E +W+ V+    L  K M++     G H   N
Sbjct: 226 -----DRCISFGITM-GDYHLN--RQLGE-TWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +   +     ++++AL+ F    G   R++ AL       I++S   N  S +A
Sbjct: 273 ALAALALADAVGLPRSSSLQALTTF---TGLAHRFQLALEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L Q+    EG    +LG     G+   +    L + LS  NI  ++  G     L 
Sbjct: 330 ALNGL-QV----EGTLHLLLG-----GDGKSADFTSLKQYLSGDNI-RLYCFGRDGRELA 378

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  P       +ETM+     I   +  GD+V++  S +C
Sbjct: 379 ELRPEI--AEQTETMEQAMRLIAPRVKPGDMVLL--SPAC 414


>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
 gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 106/274 (38%), Gaps = 43/274 (15%)

Query: 17  HSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP     +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------VP--LTLAR-----MPVDVDFGIFELGMSH---LG 173
                  IG+ N  IG          P  LTL +     +   VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           DD   E     + A    T+ ++G    +D   R
Sbjct: 241 DDPVAEEYMRSTAA----TVVTYGIDVASDIMAR 270


>gi|71735898|ref|YP_276229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|109892721|sp|Q48EF9|MURC_PSE14 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71556451|gb|AAZ35662.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322449|gb|EFW78542.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330082|gb|EFW86069.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874984|gb|EGH09133.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVEGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A IS +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVSAVISAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|254463263|ref|ZP_05076679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2083]
 gi|206679852|gb|EDZ44339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L    +     G    +IG  +      +D +  + EL  
Sbjct: 121 VVAVTGSNGKSTTSALIHHVLEHANRPTQLAG----NIGRGVLDIDPAIDGEVVVLELSS 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G+    +AK  +F EG  +   I ++ D
Sbjct: 177 YQTDLARALT----PDVAVFTNLSPDHLDRHQGMGGYFAAKRRLFAEGGPERAIIGIDED 232

Query: 229 DSFF 232
           +  +
Sbjct: 233 EGLY 236


>gi|88811840|ref|ZP_01127093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrococcus mobilis
           Nb-231]
 gi|88790724|gb|EAR21838.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrococcus mobilis
           Nb-231]
          Length = 445

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 17/140 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           ++A+TG+ GK+T    +T  L  + +      +   ++G P L L ++P  V   + EL 
Sbjct: 108 VLAVTGTNGKST----VTALLGEMARAAGLNVAVGGNLGPPALELLQLP-QVQLFVLELS 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +  L        A +  IAP HL  +  I     AKA IF G    G + LN D
Sbjct: 163 SFQLESVYSLNA----QAASLLNIAPDHLDRYPNIAAYLEAKAVIFRG---DGVMILNAD 215

Query: 229 DSFFELLKAKSHALGIKTIY 248
           D     L +     G +T+Y
Sbjct: 216 DPAVCALASA----GRETLY 231


>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTVEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|330950223|gb|EGH50483.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 91  IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 142

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 143 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 200

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 201 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 255

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 256 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 312

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 313 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 367


>gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
 gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
          Length = 492

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 148/378 (39%), Gaps = 48/378 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR + P   F A+ G   DG  F   A   GA  V         +   +  + 
Sbjct: 27  VAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPDDLPEATAWIE 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+    
Sbjct: 87  -VADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGTVGIV 145

Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188
                        + + +  TLAR+    D GI +L M   SH  E R L   V    A 
Sbjct: 146 TNRGAEYGSLTTPDPVTLHETLARL---ADEGITDLAMEASSHGIEQRRLDG-VELTAAA 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG--IK 245
            T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G  I+
Sbjct: 202 FTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAGHAIR 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T       +  DF +R  +  +E     + L   GK   V    +G    +N L+  G+ 
Sbjct: 262 TT-----GRGGDF-IRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 304 SILTA-DVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               A   D A     VF   EG     G+  R     G   L+D  Y   P +++    
Sbjct: 316 LATPAGQADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---H 366

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS + P   GR + V G
Sbjct: 367 VLSALRPFASGRLVVVFG 384


>gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
 gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
          Length = 495

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 21/239 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ + G  +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G   VV 
Sbjct: 6   LRDLLGPWVPGAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
             +  A+ G +     +PV  +  +   L+ LA     +   K T+I +TG+ GKTTT +
Sbjct: 66  EAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFL 178
           +L    + + +T A +G+  N    H+          VDV   + +L    + L  +   
Sbjct: 126 LLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLTAMEVS 185

Query: 179 THLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H +  H         AV T ++  HL     ++   SAK  +F    + G   LN DD
Sbjct: 186 SHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSE-HQVGQAILNADD 243


>gi|203288024|ref|YP_002223039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
 gi|201085244|gb|ACH94818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 30/162 (18%)

Query: 98  LAVAARLRSKAT---------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN--- 145
           L +A R+ S+ +         IIAITG+ GK+T   +L   L         + SY N   
Sbjct: 92  LKLAKRIESEISLFLMFNRNPIIAITGTKGKSTLASLLYRVL---------VASYPNVKL 142

Query: 146 --HIGV-PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             +IG+ PL        +   I EL    L +I+ L+    P I++IT +   H + +S 
Sbjct: 143 GGNIGISPLNFLDELDGISPIILELSSWQLHDIKSLS----PMISIITNVYCDHQNYYSN 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++    KA+IF  + +   I +  D +++       H L I
Sbjct: 199 FDDYIEDKAKIF--INQNSGILIVQDQAYYNYFSRFKHNLKI 238


>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|13096498|pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 102 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 157 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 210 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 260

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 261 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 360

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 361 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 413


>gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           MurE [Pantoea ananatis AJ13355]
          Length = 471

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 23/222 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           +++DSR  A  + F AI G   DG  FI  A+ +G   V+   +  AS G +     +PV
Sbjct: 1   MTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPV 60

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             +  +   L+ LA     +   K  +I +TG+ GKTTT ++L    S + +T A +G+ 
Sbjct: 61  IYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTV 120

Query: 144 NNHIGVPLTLAR----MPVDVDFGIFEL---GMSHLGEIRFLTHLVRPH--------IAV 188
            N +   L  A       VDV   + EL   G S L  +   +H +  H         AV
Sbjct: 121 GNGLVGQLVPAENTTGSAVDVQHNLDELVRKGAS-LTAMEISSHGLVQHRVAALPFSAAV 179

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            T ++  HL     +++  SAK  +F    + G   +N DD 
Sbjct: 180 FTNLSRDHLDYHGDMQQYESAKWLLFS-EHQVGVAIINADDE 220


>gi|37527517|ref|NP_930861.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|44888164|sp|Q7N148|MURC_PHOLL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|36786952|emb|CAE16026.1| UDP-N-acetylmuramate--alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 40/196 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAM----ISSI---YAQAGL-------------DPTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +AVIT I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAVITNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD   + L  +   +G + I ++G S+ AD ++  ++Q   Q +  V  
Sbjct: 221 LPFYGRAVMCIDDPVVKELIPR---VG-RYITTYGFSEEADVRITHYQQKGAQGYFTVSR 276

Query: 277 QGKS-MEVVHHGIGYH 291
           Q  + ++VV +  G H
Sbjct: 277 QDMADLKVVLNAPGRH 292


>gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia
           trachomatis D/UW-3/CX]
          Length = 803

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 35/272 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L      I +TGS GKTT   ++T  L   KK  +  IG  N   G+    
Sbjct: 91  VHRAELLAELAQDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQE-GI---- 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + 
Sbjct: 146 -NGGSGSEYFVAEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKD 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L+     + N D       + +S   G    ++FG   + D  +  + Q   + W  
Sbjct: 200 F-ALKTQQICWYNGD-----CPRLRSCLQG----HTFGLDSSCDLHILSYYQ---EGW-R 245

Query: 274 VQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    K  +VV+  I     G H   N    +GI   L  D      A   F   + R +
Sbjct: 246 LYFTAKYQDVVYADIEVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQ 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           R   +  + F  L  E Y  +P+ +   +  +
Sbjct: 306 RKNSS--ETFLFL--EDYAHHPSEISCTLRAV 333


>gi|182677683|ref|YP_001831829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633566|gb|ACB94340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 462

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K+  +AITG+ GK+TT    T  ++ + +T+    +   +IG P+     P      + E
Sbjct: 113 KSPFVAITGTNGKSTT----TALVAHLFQTFGYEVAIGGNIGTPILALEPPSPTRVHVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                +     LT  + P + V+  I P HL     +E  A+ KA +  G +K
Sbjct: 169 CSSFQID----LTPTLDPWVGVLLNITPDHLDRHGTMENYAAIKARLVMGADK 217


>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
 gi|166224763|sp|A5UIR0|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 136/356 (38%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++     +  +   H+  +  +E+   AK  I     K G   LN +D
Sbjct: 162 FQLE----TTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIHHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                              +FG+++N       + + S   W++ +  GK   +V     
Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L    +   +  ++D+   AL  F   +G   R++        
Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +      L+ F           S   +  ETM+    F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGAQLAKF-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|83764807|dbj|BAE54951.1| unnamed protein product [Aspergillus oryzae]
          Length = 497

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 39/278 (14%)

Query: 111 IAITGSVGKTTTKEMLTI-----ALSSIKKTYACIGSY--NNHIGVPLTLARMPVDVDFG 163
           IAI+GS GK+TT  M+        LS    + A +  Y  N H+G   +   M V+ D  
Sbjct: 130 IAISGSHGKSTTTSMVAGMLEAGGLSPTTISGAVVTQYGSNAHMG---SGHWMVVEAD-- 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                    G +  L  L    I+V+T I   H++ +   E+  +  A+    +   G  
Sbjct: 185 ------ESDGTMVRLPAL----ISVVTNIDSDHITFYGTQEKTRATFAQFVRNVPFYGLA 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
            L  DD     +  +      + I ++G S++AD +    +   + S   + ++ +    
Sbjct: 235 VLCIDDPGVRKILPEVQD---RNIVTYGVSEDADVRAENVEYNPQDSTFVLSVRDRRDGT 291

Query: 281 ----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +V + +G H  QN L T  I   L+ ++++   AL  F   +G  +RY      
Sbjct: 292 RRVVGSIVLNVLGLHNVQNALATTAIALELSIELESIRYALGSF---QGTNRRYIHVGEA 348

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
               +ID+ +  +PA +KA  ++  Q    G  R IAV
Sbjct: 349 NGIQIIDD-FGTHPAEIKATQTMAKQA---GARRVIAV 382


>gi|163741576|ref|ZP_02148967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385310|gb|EDQ09688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 23/138 (16%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD- 161
           R      I+A+TGS GK+TT  +L   L    +     G+          + R  +D+D 
Sbjct: 115 RFDQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGN----------IGRGVLDIDP 164

Query: 162 ---FGIFELGMSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214
               GI  L +S      + T L R   P +AV T ++P HL   +G+    +AK  +F 
Sbjct: 165 PGSGGIVVLELSS-----YQTDLARALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFA 219

Query: 215 EGLEKTGTIFLNYDDSFF 232
           EG      I ++ D+  +
Sbjct: 220 EGGPDRAIIGVDEDEGLY 237


>gi|149914524|ref|ZP_01903054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
 gi|149811317|gb|EDM71152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
          Length = 496

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L    K     G    +IG  +     P D    + EL  
Sbjct: 153 VVAVTGSNGKSTTSALIHHVLHEAGKDVQLAG----NIGRGVLDIDPPGDGGVVVLELSS 208

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL   +G+    +AK  +F EG      I ++  
Sbjct: 209 YQTELARALT----PDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGIDEP 264

Query: 229 DSFF 232
           +  F
Sbjct: 265 EGLF 268


>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           novyi NT]
 gi|158512394|sp|A0PXN6|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
           NT]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 108 ATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGI 164
           A I  ITGS GKTTT  ++  I ++   KT+  +G    +IG PL   +  M  + D  +
Sbjct: 117 AKIFGITGSDGKTTTTTLVYNILMTEGYKTW--VGG---NIGNPLFSNIEEMKEE-DKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T     + A++T ++P HL     ++E   AK  IF+  E    + 
Sbjct: 171 LELSSFQL-----MTMKEEINCALVTNLSPNHLDIHKDMDEYVDAKKNIFKYQEVNDLLV 225

Query: 225 LNYDDSFFELL--KAKSHAL 242
           LN D+     L  +AKS  +
Sbjct: 226 LNRDNDITNSLVKEAKSRVM 245


>gi|168789615|ref|ZP_02814622.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
 gi|261226845|ref|ZP_05941126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255249|ref|ZP_05947782.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370788|gb|EDU89204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M+      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKFS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F    ++ A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGVQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
           symbiont]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 112/261 (42%), Gaps = 34/261 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + +          +IG+P LTL + P  + + +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMARAAGWQVGVGGNIGLPALTLLKSPAQL-YVV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T+ ++   A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 158 LELSSFQLET----TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAD---IC 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD     ++        +   SFG     D+ L    Q    +W+ V+    L   
Sbjct: 211 VVNADDGMTMPVRGAD-----RRCVSFGIDV-GDYHL---NQQQGSTWLRVKGEKVLNTD 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++V    G H   N L  L +   +   + +++KAL+ +    G   R++        
Sbjct: 262 EMKLV----GQHNYTNALAALALADAVNIPLASSLKALTTY---SGLPHRFQLVHEAHGV 314

Query: 340 TLIDESYNANPASMKAAISVL 360
             I++S   N  S +AA++ L
Sbjct: 315 RWINDSKATNVGSTEAALNGL 335


>gi|312143936|ref|YP_003995382.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904587|gb|ADQ15028.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 453

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 149/371 (40%), Gaps = 52/371 (14%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPV 158
           +A  +R+K TI AI G+ GKTTT  ML   +++  K  A  +G Y   I   ++  +   
Sbjct: 98  LAYLMRNKKTI-AIAGTHGKTTTTAMLASIMTAADKDPAIMVGGYLEDIKGNISDGK--- 153

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
               G + +  +   +  FL     P++ ++T +   H   +  + E  +      +  E
Sbjct: 154 ----GEYFITEADESDGSFL--YFDPYLLLLTNLELDHPDYYKDLAEFKAIFKRFADKNE 207

Query: 219 KTGTIFLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-V 274
           K   +  N DD   + L   + K+ A  +         KN D+ ++       +S  +  
Sbjct: 208 KKALVLYNGDDKNLKDLFKNRKKTKAFSL---------KNYDYSVKNISYDKNKSSFDFY 258

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRY-- 330
           Q     M++     G +   N      + + L  D++T    KAL  F   +G G+R+  
Sbjct: 259 QADNFLMKINLSSAGEYNIYN--AAAAVSTALELDIETKFIKKALKTF---KGVGRRFEL 313

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEM 381
           +  +N G   ++D+ Y  +P  +KA +  + Q+          PH   R    L      
Sbjct: 314 KAKINNGTVDVVDD-YAHHPTEIKALLKAVKQMGYSRITAVFQPHRFSRTKKFL------ 366

Query: 382 GELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQ 438
            E S SF   D   +  +++ S  +     +      + +  +  V Y    D + L ++
Sbjct: 367 KEFSYSFVDADFVYLTDIFSASEQYKETISMEKFSQEIEKHSNTEVKYLADFDKIALQLK 426

Query: 439 SSLVDGDVVVV 449
            +L+ G++++ 
Sbjct: 427 ENLISGEIILT 437


>gi|304396564|ref|ZP_07378445.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
 gi|304356073|gb|EFM20439.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
          Length = 492

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 68/332 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGNSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDAVIRDLLPR---VG-RHITTYGFSDDADLRIENYEQSGAQGHFTLIR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
           Q K+ +++  +  G H A N    + + S    + +  + AL  F   +G G+R+     
Sbjct: 277 QDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDNAILAALESF---QGTGRRFDLLGE 333

Query: 333 ----ALN--QGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLG 376
                +N   G   L+D+ Y  +P  + A I                 PH   R   +  
Sbjct: 334 FPTEPVNGQPGTAMLVDD-YGHHPTEVDATIKAARAGWPDKKLVMVFQPHRYSRTRDLFD 392

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           D   +  LS   H+D+  +L +Y+     + G
Sbjct: 393 DFANV--LS---HVDVLLMLDVYSAGETAIPG 419


>gi|261338918|ref|ZP_05966776.1| hypothetical protein ENTCAN_05116 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318743|gb|EFC57681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 150/365 (41%), Gaps = 54/365 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG  + I+  G      +D   +R + P+     +  P   G D +   V++        
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVTPRVMDTRVSPP---GLDTLPEQVERHLGGLNDD 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  M  +  SLS       +++G +      A    +A IIAITGS GK+
Sbjct: 62  WLLAADLIVASPGMALAHPSLSAAADAGVEIVGDIELFCREA----QAPIIAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P   A M +D    ++ L +S   ++   T 
Sbjct: 118 T----VTTLVGEMAKAAGMNVGVGGNIGLP---ALMLLDKGCELYVLELSSF-QLETTTS 169

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           L     A I  +   H+  +  G+++  +AK  ++E  +      +N DD+    ++   
Sbjct: 170 L-HAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCVVNADDALTMPVRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                    SFG +   D+ L   +Q  E +W+ V+    L  K M++     G H   N
Sbjct: 226 -----DRCISFGITM-GDYHLN--RQLGE-TWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +   +     ++++AL+ +    G   R++ AL       I++S   N  S +A
Sbjct: 273 ALAALALADAVGLPRSSSLQALTTY---SGLAHRFQLALEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVL 360
           A++ L
Sbjct: 330 ALNGL 334


>gi|170681706|ref|YP_001742210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SMS-3-5]
 gi|218698511|ref|YP_002406140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI39]
 gi|218703348|ref|YP_002410867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UMN026]
 gi|293403160|ref|ZP_06647257.1| murD [Escherichia coli FVEC1412]
 gi|298378690|ref|ZP_06988574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300900881|ref|ZP_07119018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300938483|ref|ZP_07153223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331661462|ref|ZP_08362386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331681473|ref|ZP_08382110.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
 gi|170519424|gb|ACB17602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           SMS-3-5]
 gi|218368497|emb|CAR16232.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI39]
 gi|218430445|emb|CAR11311.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           UMN026]
 gi|291430075|gb|EFF03089.1| murD [Escherichia coli FVEC1412]
 gi|298281024|gb|EFI22525.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300355645|gb|EFJ71515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300456552|gb|EFK20045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331061377|gb|EGI33340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331081694|gb|EGI52855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---ICV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|16273065|ref|NP_439297.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae Rd
           KW20]
 gi|260580223|ref|ZP_05848053.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
 gi|1171071|sp|P45066|MURC_HAEIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356937|pdb|1GQQ|B Chain B, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356938|pdb|1GQY|A Chain A, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|33356939|pdb|1GQY|B Chain B, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae
           Rd KW20]
 gi|260093507|gb|EEW77440.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
          Length = 475

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 46/231 (19%)

Query: 56  FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           +I HA +  +GA +VVV       N ++V S     IPV      +     LA   R R 
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVTS-KQKRIPV------IQRAQMLAEIMRFRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159
               IA+ G+ GKTTT  M+++  +  K   T+   G       N H+G    L     +
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D     L               +P ++V+T + P H+  + G  E++ +   +    L 
Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             G   +  DD     L  K   +G + + ++G S+ AD+++  ++Q   Q
Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268


>gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
 gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
          Length = 483

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITAGLSFYVSEIDYGA-----DIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLVMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|332670128|ref|YP_004453136.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339166|gb|AEE45749.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 474

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 15/193 (7%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239
           P +AV+T + P HL ++   E    A       +   G +    DD       E   A  
Sbjct: 178 PLVAVVTNVEPDHLDHYGSREAFEDAFVAFVRRVRPGGVLVACADDEGAARLVETAAADL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNML 297
            A G++ + ++G+S  A  ++R  +Q       +V L   +  V VH  + G H A +  
Sbjct: 238 AAAGVRVV-TYGRSAGA--EVRVGEQRPADGGWDVDLTTDATTVTVHLAVPGTHNALDAA 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                V  L    + A +AL  F    G G+R+      G   ++D+ Y  +P  + A +
Sbjct: 295 AAWAAVRALGIPAEEAARALGAF---RGTGRRFEDRGTAGGVRVVDD-YAHHPTEVAALL 350

Query: 358 SVLSQISPHGEGR 370
                ++  G+GR
Sbjct: 351 RAARTVA--GDGR 361


>gi|262376991|ref|ZP_06070217.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
 gi|262308029|gb|EEY89166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
          Length = 448

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +  +   K  A  G    ++G P  L     D + 
Sbjct: 100 RRATDKPIVAITGSNAKSTVTTLIGLMAADAGKKVAIGG----NLGRP-ALDLTKDDPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L     L       +AV+  ++  HL     +    +AK  IF+G++K   
Sbjct: 155 YILELSSFQLETTSNLA----AEVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KS 280
           +  N DDS    L        +  I SFG +     Q    K      W+    +   KS
Sbjct: 208 VVYNRDDSLTRPLVPD-----VTPIQSFGLNAPDMNQYGILKDTDGSIWLARGRERLLKS 262

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            E+   G   H   N L  L +   +   +++ +  L  F     +G  +RC
Sbjct: 263 TEMYMQGT--HNVANALACLALGEAIGLPLESMLNTLKTF-----KGLEHRC 307


>gi|257483446|ref|ZP_05637487.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330987135|gb|EGH85238.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011578|gb|EGH91634.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 26/258 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +  +      +   ++G S++AD +    +Q    ++  V  + +  ++V  +
Sbjct: 229 DDPVVREILPQVK----RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVEGGNVMLV 341

Query: 343 DESYNANPASMKAAISVL 360
           D+ Y  +P  + A IS +
Sbjct: 342 DD-YGHHPREVAAVISAV 358


>gi|126700267|ref|YP_001089164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile 630]
 gi|255101821|ref|ZP_05330798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-63q42]
 gi|255307688|ref|ZP_05351859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile ATCC 43255]
 gi|118595649|sp|Q182Y7|MURD_CLOD6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115251704|emb|CAJ69539.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Clostridium difficile]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP ++ I  I   HL+    +E+   AKA IF          LNYDD   + L  K +A 
Sbjct: 177 RPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDFCVLNYDDEIVKSLADKCNA- 235

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             K IY F ++K  N    L       +       L    + +     G H  +N +  +
Sbjct: 236 --KVIY-FSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVSLP----GGHNLENCMAAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            I  +   D++     L  F   E R +  R   N      +++S   NP S   AI
Sbjct: 289 AIAYVCKIDLEVIKDVLMTFKGVEHRQEFVR---NLDNVIYVNDSKGTNPDSTIKAI 342


>gi|260663593|ref|ZP_05864482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260551819|gb|EEX24934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 110 IIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           +I++TGS GKTTT  ++   +A+ +  +       Y  +IGV  +     V  + G  + 
Sbjct: 114 LISVTGSNGKTTTTTLIEQMVAMGNPHRV-----EYAGNIGVSFS----KVAEELGPDDT 164

Query: 168 GMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            ++     + L     RPHIAVIT I   HL      +    AK  I     K   + +N
Sbjct: 165 IVTEASSFQLLGAPTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDDYLVIN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +D   ++ L  +++A    T+  F  S+ A  Q   +++  +  W + ++
Sbjct: 225 WDKEEWQKLAKRTNA----TVVPF--SRLAKSQEGAYQKGGDLYWRQERI 268


>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter lovleyi SZ]
 gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ ++ DSR +     FFA+ G   DGH FI  AV  GA  VV+     AS     +P  
Sbjct: 23  VSALTCDSREVTAGTLFFALHGSKVDGHRFISQAVTAGAAAVVLED---ASYAPEQVPWL 79

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            V +   A+  +  AAR     T    +I ITG+ GKTTT  +L   L++     A +G+
Sbjct: 80  QVTNGRQAMALM--AARFFGNPTRDLPLIGITGTNGKTTTSYLLEGILTAAGLPPAVLGT 137

Query: 143 YNNHIGV 149
            +   G 
Sbjct: 138 ISYRFGT 144


>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
 gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTVEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
 gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 49/385 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           ++    +IAI+G+ GKTTT  M+   L           +YN     P  L    V    G
Sbjct: 98  MKDFKNVIAISGTHGKTTTTSMIGYILKK--------ANYN-----PTVLVGAFVKQLGG 144

Query: 164 IFELGMSHLGEIRFLTHL-----VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F +G      +    ++       P I VI  I   HL  F  I+ I ++  +  + + 
Sbjct: 145 NFVIGSKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIP 204

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +G +  N DD   + +K     L  + I    K K   F       CS+  + E  ++ 
Sbjct: 205 ASGFLIANCDD---KNVKDIISELNTQIICISTKEKTDIFA--DNISCSD-GYYEFDVKN 258

Query: 279 KSMEVVHH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            + +++ H    I G+H   N L    + S L  +  T   A++ F    G  +R   A 
Sbjct: 259 NNDKILAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEHAIAEFC---GASRRLEKAG 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELS 385
                 L D+ Y  +P  +KA+++ L ++S         PH   R   +L +  E   LS
Sbjct: 316 EFDGICLYDD-YAHHPTEIKASLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAE--SLS 372

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +  + + +V +    ++  ++  ++ L LK+     +   Y  + + +  ++      G
Sbjct: 373 LADKVIITDVYAAREKNNFGITSENLCLKLKEI---GVDCEYISSFEDIACYVVKEAKKG 429

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D++    +      + I+++L++ P
Sbjct: 430 DIIATIGAGDIN--KCIDIILKKVP 452


>gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T ++  HL     +    +AKA++F          LN DD F   L+   H      
Sbjct: 193 AVFTNLSRDHLDFHGSMAAYGAAKAKLFTN-PALQLAVLNADDPFSAELRTHLHPDVRIV 251

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y FG     D+++R++   +  + + +     +  +    +G   A+N L  L  V  L
Sbjct: 252 GYGFGAG---DYRVREYHPGARATLLVIDTPAGTRPLRIPLMGMANARNFLAALAAVEGL 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             DVD  + A     P  GR +R      Q    L+D  Y   P +++  +  L  ++  
Sbjct: 309 GMDVDPQVLAALRLPP--GRYQRLSPRTPQQPDVLVD--YAHTPDALRQVLEDLRTVA-- 362

Query: 367 GEGRRIAVLG 376
            +GR   V G
Sbjct: 363 -KGRITVVFG 371


>gi|5834372|gb|AAD53938.1|AF179611_22 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 269

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R   +  ++ ITG+ GK+TT    T  +  I K          +IG+PL LA  P+  D 
Sbjct: 117 RHGRRCPVVGITGTNGKSTT----TALIHHILKEAGLPTLMGGNIGLPL-LAADPLP-DG 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           G++ L +S   +I  LT  +   IAV+T I P HL    G E    AK  +F
Sbjct: 171 GVYVLELSSY-QID-LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLF 220


>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
 gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
          Length = 441

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 38/258 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+T    +T     + K          +IGVP           + + EL  
Sbjct: 112 VIAITGSNGKST----VTDWTGQVAKATGLKVGVGGNIGVPALDLLTLDADLY-VLELSS 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  + P  A    +   H+  + G+E+   AK  IF+  +   +  +N +D
Sbjct: 167 FQLET----TSSLAPKAAAFLNLTEDHMDRYQGMEDYRQAKLRIFDHAQ---SCIVNAED 219

Query: 230 SFFELLKAKSH----ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                 +   H    +L   T +S       ++     KQ    + + +           
Sbjct: 220 KQTYPDQNNKHLVEFSLTDSTQFSVIDCDGIEYLAMNGKQIIPAAELSL----------- 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342
             +G H   N L+ L ++S +  D++  + AL  ++     G  +RC   A N+G    +
Sbjct: 269 --VGRHNVANALVVLALLSQVGVDIEKGLDALKSYN-----GLTHRCQVVADNRG-IKWV 320

Query: 343 DESYNANPASMKAAISVL 360
           ++S   N AS  AA++ L
Sbjct: 321 NDSKATNVASTMAALAGL 338


>gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
 gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
          Length = 461

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 22/266 (8%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  M+  + L+        +G Y   I     L +       G + +  
Sbjct: 111 IAVAGAHGKTTTTAMVANVLLAGGLDPTVLVGGYWPLIEGNCRLGK-------GSYFVTE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL  L+ P +AV+T I   HL  +  +E +  A       +E  GT  +  D 
Sbjct: 164 ADESDASFL--LLTPMLAVVTNIENDHLDYYGNLEALLGAFRTFLARIEPPGTAVVCLDS 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
               L++     L I  I ++G  + AD+ L+K +     S   +  +G+ +  +   + 
Sbjct: 222 P---LVRQLIGVLNIPVI-TYGMEEGADYILKKVELSGSSSSALLYYRGRLLGQLKLNLP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    + + + L      A +AL+ F       +R+      G   ++D+ Y  
Sbjct: 278 GKHNLLNAAAAVAVGAYLGVPFAVASQALAEFRSVR---RRFEFLGEAGGVMVVDD-YAH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAV 374
           +P  ++A I    QI     GR + V
Sbjct: 334 HPTEVQATIEAARQIH---RGRLVVV 356


>gi|184155049|ref|YP_001843389.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
 gi|226711916|sp|B2GB77|MURD_LACF3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183226393|dbj|BAG26909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 110 IIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           +I++TGS GKTTT  ++   +A+ +  +       Y  +IGV  +     V  + G  + 
Sbjct: 114 LISVTGSNGKTTTTTLIEQMVAMGNPHRV-----EYAGNIGVSFS----KVAEELGPDDT 164

Query: 168 GMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            ++     + L     RPHIAVIT I   HL      +    AK  I     K   + +N
Sbjct: 165 IVTEASSFQLLGAPTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDDYLVIN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +D   ++ L  +++A    T+  F  S+ A  Q   +++  +  W + ++
Sbjct: 225 WDKEEWQKLAKRTNA----TVVPF--SRLAKSQEGAYQKGGDLYWRQERI 268


>gi|86148541|ref|ZP_01066828.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
 gi|85833687|gb|EAQ51858.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEADLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             +  DD    EL+   S     + + ++G S++AD ++  + Q  +Q    V  +GK+ 
Sbjct: 230 AVMCVDDPVVRELIPQVS-----RQVITYGFSEDADIRIENYVQEGQQGKFTVVREGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           +++  +  G H   N L     +++ T D  +    L      EG G+R+         +
Sbjct: 285 LDITLNIPGRH---NALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLGEYETGK 341

Query: 337 GFFTLIDESYNANPASMKAAI 357
           G   L+D+ Y  +P  +   I
Sbjct: 342 GVAMLVDD-YGHHPTEVDVTI 361


>gi|189347180|ref|YP_001943709.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
 gi|189341327|gb|ACD90730.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
          Length = 474

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 116/319 (36%), Gaps = 57/319 (17%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP IA+I  I   H   F  +E+I  +       + + GT+ +N DD   E     S 
Sbjct: 180 LYRPDIAIINNIEFDHADIFDSLEDIRKSFRLFVNLIPRNGTLLVNGDDP--EACAVASK 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGY 290
           A      + F        Q  +W        M  +    +  + H G           G 
Sbjct: 238 AFCRTERFGFD-------QECEWTAKD----MNTEENVTTFSIFHLGNPQGKVRIPLFGK 286

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347
           H   N L  +         ++T  +AL +F     R KR R  + +GF    TLI E + 
Sbjct: 287 HNIMNTLAAVAAARHAGLSMETIAEALPLFK----RPKR-RMEITEGFESGITLI-EDFA 340

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++KA +  +S++     GRRI    +          F  +LA      ++  V + 
Sbjct: 341 HHPTAIKATLEAVSELCI---GRRIVACFEPRSNTTTRNIFQKELARCFGPASV--VVMG 395

Query: 408 GFH---VLALKDAL-PRSIHVHYSETMDGLFL--------------FIQSSLVDGDVVVV 449
             H     A  D L    +     E    +FL              F++S+L   DVVV 
Sbjct: 396 MVHRPERYAPDDRLDTEKLRRELEEREKTVFLAGSQPDDYPADIVRFLKSTLKKNDVVVF 455

Query: 450 KSSNSCGFYRLINLLLEEF 468
            S+ S  F  L  L L+ F
Sbjct: 456 MSNGS--FSSLKTLFLDNF 472


>gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 484

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITTGLSFYVSEIDYGA-----DIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLVMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
 gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|310779640|ref|YP_003967973.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
 gi|309748963|gb|ADO83625.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 29/277 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L ++   IA+ G+ GKTTT  ML  A+ S+  T    G           L  +  +  
Sbjct: 95  ALLMNEEQGIAVAGTHGKTTTSSMLGAAMLSLDPTIVVGG----------ILPEINSNAK 144

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT- 220
            G  +L ++   E       + P  ++IT I   HL N   +E I  +     E ++KT 
Sbjct: 145 AGSSKLFIAEADESDNSFLYLNPFTSIITNIEADHLENHGSLENIERS---FIEFIDKTK 201

Query: 221 GTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             + +N D ++  +++K K     IKT YS  K+ NAD      +    +   EV + G+
Sbjct: 202 DEVIVNIDCENIRKVIKGKEK---IKT-YSL-KNNNADIYASNIRVEDSKIHYEVTVCGE 256

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           ++      + G H   N L  + +      + +   K L  F   +G  +RY    ++  
Sbjct: 257 NLGTFVLSVPGEHNVSNSLPVIYLAHKYGVEKEEMKKMLKFF---KGAKRRYDILYDKN- 312

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +ID+ Y  +P  +KA +     I    +G+ +AV 
Sbjct: 313 VKIIDD-YAHHPTEIKATLQGARSIE---KGKIVAVF 345


>gi|259907418|ref|YP_002647774.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963040|emb|CAX54523.1| UDP-N-acetylmuramate-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477251|emb|CAY73164.1| L-alanine adding enzyme,UDP-N-acetyl-muramate:alanine ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 151/385 (39%), Gaps = 76/385 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEGGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   L  DD+    L  +   +G + I ++G S++AD ++  + Q   Q    +  
Sbjct: 221 LPFYGRAVLCVDDAVIRDLIPR---VG-RQITTYGFSEDADVRVDNYHQQGAQGHFTLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------ 329
             K  M+V  +  G H A N    + + +    D +  + AL  F   +G G+R      
Sbjct: 277 HDKPLMQVTLNAPGRHNALNAAAAVAVATEENIDDEDILNALESF---QGTGRRFDFLGE 333

Query: 330 YRCALNQGF--FTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGD 377
           Y  AL+ G     ++ + Y  +P  +   I          +++    PH   R   +  D
Sbjct: 334 YPLALSNGSAGTAMLVDDYGHHPTEVDVTIKAARAGWPDKNLVMIFQPHRYTRTRDLYDD 393

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS------ETMD 431
              +  LSQ   +D+  +L +Y+     ++G    A   AL R+I              D
Sbjct: 394 FANV--LSQ---VDVLLMLDVYSAGETPIAG----ADSRALCRTIRGRGKVDPILVSDHD 444

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   +   L   D+++V+ + + G
Sbjct: 445 AVLEMLLPKLTGNDLILVQGAGNVG 469


>gi|119383341|ref|YP_914397.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
 gi|158512585|sp|A1AZK7|MURD_PARDP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119373108|gb|ABL68701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 32/153 (20%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIAL 130
           ++A   +L +PV   D+ +G   +    A   R  +   +IA+TGS GK+TT  ++   L
Sbjct: 86  VIARAYALGVPV---DNDIGLFFRSFATAEWERFDTTPRVIAVTGSNGKSTTTALIHHIL 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI------RFLTHLVR- 183
               +     G                 ++  G+  L  +H GE+       + T L R 
Sbjct: 143 KETGRPTQIGG-----------------NIGTGVLSLDPAHDGEVVVLELSSYQTDLARA 185

Query: 184 --PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             P +AV T ++P HL    G+    +AK  +F
Sbjct: 186 LTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLF 218


>gi|332187168|ref|ZP_08388908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
 gi|332012868|gb|EGI54933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
          Length = 429

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +   A A +      ++ ITG+ GK+TT    T  +  I KT         +IG+P
Sbjct: 92  VIGDIELFAQARKNLPPHKVVGITGTNGKSTT----TALVHHILKTAGVPTLMGGNIGLP 147

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L + P+  + G++ L +S   +I  LT  +   +AV+  I P HL  + G    A++K
Sbjct: 148 I-LGQAPLP-EGGVYVLELSSY-QID-LTQSLDCDVAVLLNITPDHLDRYDGFAGYAASK 203

Query: 211 AEIF 214
           A +F
Sbjct: 204 ARLF 207


>gi|282902044|ref|ZP_06309942.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193131|gb|EFA68130.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 489

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 55/291 (18%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138
           L  P+    DVL AL      A   S    IA+ G+ GKTTT  M+   L  + +  T  
Sbjct: 118 LGCPILHRSDVLAAL-----IADYHS----IAVAGTHGKTTTSSMIGYMLLEAGLDPTIV 168

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--------HLVR--PHIAV 188
             G  N                    +E G + LGE ++L          LV+  P I +
Sbjct: 169 VGGEVN-------------------AWE-GNARLGESKYLVAEADESDGSLVKHTPAIGI 208

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H  +++ +E++     E F+   +   + +   D      + K    GI   Y
Sbjct: 209 ITNIELDHPDHYATLEQV----VETFQTFARGCQVVVGSIDCDIVRDRLKP---GIS--Y 259

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307
           S    + AD+ +       + +   V  +GKS+ V++   +G H   N L  + +   L 
Sbjct: 260 SLDPDQGADYTVTNIDYRPDGTTALVWEKGKSLGVLNLQLLGLHNLSNALAAVAVGRSLN 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     K L+ F   EG  +R+         T ID+ Y  +P+ ++A ++
Sbjct: 320 LEFGQIAKGLTTF---EGARRRFEFKGEVDGITFIDD-YAHHPSEIRATLA 366


>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
 gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|312885129|ref|ZP_07744813.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367202|gb|EFP94770.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 489

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 153/385 (39%), Gaps = 59/385 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  ++T   S   +  T+   G      G    L    +        + 
Sbjct: 125 IAIAGTHGKTTTTALVTQIYSEAGLDPTFVN-GGLVKSAGASARLGSSRI-------LIA 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++++T I   H+  ++G  E++     +    L   G   +  
Sbjct: 177 EADESDASFL-HL-QPMVSIVTNIEADHMDTYAGDFEKLKQTFIDFLHNLPFYGQAIVCI 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     L  K      + + ++G S++AD ++  + Q   Q    V  +GK  +++  +
Sbjct: 235 DDPIVRDLIPKIS----RQVITYGFSEHADVRIENYHQTGHQGQFTVVREGKPLLDITLN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCALNQGFFT 340
             G H   N L     +++ T D   D AI  LS     +G G+R+        ++G   
Sbjct: 291 IPGRH---NALNAAAAIAVATEDDIKDEAI--LSAMASTQGTGRRFEHLGEFDTDKGQVM 345

Query: 341 LIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           L+D+ Y  +P  +   I                 PH   R   +  D   + E      +
Sbjct: 346 LVDD-YGHHPTEVDVTIQAARNGWPQSRLVMIYQPHRFSRTRDLYDDFVNVLE-----RV 399

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVD 443
           D+  +L +Y      +SG    A   AL R+I        +   ET + L   + + L D
Sbjct: 400 DVLIMLDVYAAGEAPISG----ADGRALCRTIRGRGKIDPIFVRETSE-LPAVLANVLQD 454

Query: 444 GDVVVVKSSNSCG--FYRLINLLLE 466
           GD+V+ + +   G    RL +L L+
Sbjct: 455 GDLVLTQGAGDIGKVAKRLASLKLD 479


>gi|282859040|ref|ZP_06268176.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
 gi|282588208|gb|EFB93377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 13/149 (8%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           + +I ITGS GKTTT  ++              G+  N +   L +A  P   D+ I EL
Sbjct: 102 SKMICITGSNGKTTTTSLIFHIFKDAGYDVGLAGNIGNSLA--LQVAEDP--HDYYIIEL 157

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
               L ++    +  R +IA++  I P HL  +    E  A AK  I +   K  +    
Sbjct: 158 SSFQLDDM----YNFRANIAILLNITPDHLDRYEYKFENYADAKMRIIQNQTKEDSFIYW 213

Query: 227 YDDSFFELLKAKSHALGIKTI-YSFGKSK 254
            DD    ++K +     +K + Y F + K
Sbjct: 214 NDDP---VIKKELEKFDVKAVRYPFSELK 239


>gi|261823018|ref|YP_003261124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium wasabiae WPP163]
 gi|261607031|gb|ACX89517.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           wasabiae WPP163]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 185/458 (40%), Gaps = 65/458 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVVPRVVDTRISPP---GLDKLPEQVERHLGSLNED 61

Query: 69  -VVNTDM-VASIG-SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++N D+ VAS G +L+ P+     D  +  +  + +  R  ++A I+AITGS GK+T  
Sbjct: 62  WLMNADLIVASPGVALATPILCDAADAGIEIVGDIELFCR-EAQAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  +  + +          +IG+P L L   P      + EL    L      T  +
Sbjct: 119 --VTTLVGEMARAAGWQVGVGGNIGLPALQLLEQP--AQLYVLELSSFQLET----TSSL 170

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               A I  +   H + +  G+++  +AK  I+   E      +N DD+    ++     
Sbjct: 171 HAAAATILNVTEDHTNRYPFGLQQYRAAKLRIY---EHADLCVVNADDALTMPIRGAD-- 225

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNML 297
                  SFG     D+ L + +    ++W+ V     L  + +++V    G H   N L
Sbjct: 226 ---VRCRSFGVDV-GDYHLNRQQG---ETWLRVNGERVLNTREIKLV----GQHNYTNAL 274

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +   +   + +A+ AL+ F    G   R++ A  +     I++S   N  S +AA+
Sbjct: 275 AALALADAVKIPLASALTALTAF---TGLPHRFQMAFERDGVRWINDSKATNVGSTEAAL 331

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           S L+      +G    +LG              D + ++  +    + L  F   A + A
Sbjct: 332 SGLTV-----DGTLHLLLG--------GDGKSADFSPLVPYFQGERIRLYCFGRDAAQLA 378

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             R      +ETM+     I   +  GD+V++  S +C
Sbjct: 379 ALRPEIAEQTETMEQAMRVIAERIKPGDMVLL--SPAC 414


>gi|254828161|ref|ZP_05232848.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
 gi|258600547|gb|EEW13872.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
          Length = 447

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IAITGS GKT+T  +L+  + +I+ T   IG    +                G  +  
Sbjct: 102 TSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGN----------------GTKDAE 145

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIF 224
              L    +  H +  +P  A++T I   H   F  ++++ +A    FE L K     +F
Sbjct: 146 YFALEACEYQRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVF 201

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SM 281
              DD+  EL K     L I  IY FG  +  +FQ +   + +  +  +V  + +   S 
Sbjct: 202 ALGDDA--ELRKL---TLDIPIIY-FGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSF 255

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+  +G   H   N L  + +       V+     L  F   EG  +R+     +G   L
Sbjct: 256 EIPAYGD--HNVLNALSVIALCDYEGLPVEDVKNELKTF---EGVKRRFSIT-EKGNQVL 309

Query: 342 IDESYNANPASMKAAISVLSQISP 365
           +D+ Y  +P+ ++A ++   Q  P
Sbjct: 310 VDD-YAHHPSEIRATVNAARQKYP 332


>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
 gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
          Length = 453

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G ++    AA     A +I ITGS GK+T   M+   LS+  K  A  G++    G P
Sbjct: 99  VMGDIDLFVAAA----SAPVIGITGSNGKSTVTAMVASMLSACGKRVAVGGNF----GTP 150

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L  +   VDF + EL    L   + L    +  +A +  ++  HL     +     AK
Sbjct: 151 -ALDLLDQAVDFYVLELSSFQLERAQPL----KLAVATVLNVSADHLDRHGSMPRYHHAK 205

Query: 211 AEIFEG 216
            +IF+G
Sbjct: 206 HKIFQG 211


>gi|74310707|ref|YP_309126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           sonnei Ss046]
 gi|118595692|sp|Q3Z5S1|MURD_SHISS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|73854184|gb|AAZ86891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sonnei
           Ss046]
 gi|323165971|gb|EFZ51751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella sonnei
           53G]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 54/365 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIAQAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P  L  +  + +  + EL    L     L  
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVLELSSFQLETTSSLQA 172

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 173 VA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D+ L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVL 360
           A++ L
Sbjct: 330 ALNGL 334


>gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score = 40.4 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 39  PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
           P + F A+ G + DG   I  A+++GA  V    +    +    +P+  V  +   L+  
Sbjct: 3   PGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPLIPVKGLAAQLS-- 60

Query: 99  AVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           A+A R    ++    ++ +TG+ GKT+  +++  AL ++ +    +G+
Sbjct: 61  AIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVGT 108


>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
 gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|237729389|ref|ZP_04559870.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
 gi|226909118|gb|EEH95036.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSDDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG + + V  +  G H A N    + + +    + D  ++AL  F   +G G+R+
Sbjct: 277 QGMADLRVTLNAPGRHNALNAAAAVAVATEEGIEDDAILRALESF---QGTGRRF 328


>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
 gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
          Length = 494

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 157/397 (39%), Gaps = 44/397 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+ G          V+GI  +S      + F  I G   DG +F   A+  GA 
Sbjct: 3   LRELLAAVDGVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFWQSALASGAV 62

Query: 67  LVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             +V+ + V     +  SL I    ++     ++  A       +  ++ +TG+ GKTTT
Sbjct: 63  AAIVSPEAVQKNPPTPESLVISASNMNKACAQISA-AFYGYPGQQLRMLGVTGTNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGS-YNNHIGVPLTLA-RMPVDVD--------------FGIFE 166
             ++   L+ +    A +G+ Y    G   T A   P  VD              FG+ E
Sbjct: 122 THLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQAVDAGCEFGVME 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R         +AV T +   HL     +E+   AKA +F      G   +N
Sbjct: 182 VSSHALAQDRVFGCPF--EVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPDYLQGRAIIN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG----KSM 281
            DD + + L      L  + ++++   + +AD ++      S+ ++  + + G       
Sbjct: 240 ADDEYGQRLIT---GLSKERVWTYSVNNHHADLRM------SDLNYQPIGVSGILHTPKG 290

Query: 282 EVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +V      +G +  +N+L  +  V  L  D+     A+S F    GR +R + + N+   
Sbjct: 291 DVAFSSPLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDVS 350

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++D  Y   P S+   +  +    P   GR I V G
Sbjct: 351 VIVD--YAHTPDSLGNLLKSVRAFIP---GRIICVFG 382


>gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 516

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPH----YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +  DSR I   + FFA    H     DG  FI  A++ GA  VV +   + S  +     
Sbjct: 26  VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVVFDLKDMDSQLTDHPQC 85

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           F V ++     +L          +  II +TG+ GKT+  + L  AL +     A +G+ 
Sbjct: 86  FAVKNLAAQAGQLCSQWYGHPSKELNIIGVTGTNGKTSITQWLAQALDASNHRTAVLGTL 145

Query: 144 NNHIGVPLTLARMPVDV-DFGIFELGMSHLGE-------IRFLTHLVRP--------HIA 187
               G P  L +      D    +  ++ L         +   +H +            A
Sbjct: 146 G--TGFPGALVQTGYTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIAGTDIQCA 203

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF 231
             T +   HL     + + A AKA++F+  GL+      +N DD+F
Sbjct: 204 AFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLKHA---VINLDDAF 246


>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
 gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
          Length = 496

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 138/366 (37%), Gaps = 35/366 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +  +   L +      
Sbjct: 25  VTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVECAPARLLLAPSARR 84

Query: 90  DVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN--- 144
            +  A        A RLR    + A+TG+ GKTT   ++     +       +G+ +   
Sbjct: 85  AMALAAASFHGRPAERLR----MAAVTGTNGKTTVTYLVEACARAAAVPVGVLGTISFRF 140

Query: 145 ------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                           +   LA M        + E+    L + R     +R   A  T 
Sbjct: 141 PGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAG--IRFQAAGFTN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +   HL     ++   +AK  +F E L   GT  +N  D +   L A     G + ++ +
Sbjct: 199 LTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARL-ADQLGPGPR-VWRY 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G       +  + +     +    +    ++ +    +G H  +N+L   G+   L    
Sbjct: 257 GVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLLCAAGLALGLGLPP 316

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  ++ L+  H   GR +R      +G    +D ++  +  ++   I+ L  +SP    R
Sbjct: 317 DAVVRGLAASHGAPGRLERID---GRGLSVFVDYAHTDD--ALARMIAALRGLSPR---R 368

Query: 371 RIAVLG 376
            I V G
Sbjct: 369 LICVFG 374


>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|122063239|sp|Q3AAE4|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +P +AV+  + P HL     +E    AKA IF   ++T    LNYDD     L  K+
Sbjct: 174 KPKVAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKT 230


>gi|323356550|ref|YP_004222946.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
 gi|323272921|dbj|BAJ73066.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 151/369 (40%), Gaps = 38/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           ++++ G+ GKTT+  M+  AL +++   T+   G           +A +      G  +L
Sbjct: 116 LVSVAGAHGKTTSTGMIVTALRALELDPTFVNGG----------VIADLGASSGTGSDDL 165

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E      L    +A+IT + P HL ++   +   +A A   +   +   + ++ 
Sbjct: 166 VVIEADESDGTFELYDTSVALITNVDPDHLDHYGSRDAFDAAFARFADAASEA--VVISA 223

Query: 228 DDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+    ++ + +HA     + +FG+   AD +L   +     ++  +   G+S+EV   
Sbjct: 224 DDAGARAVRERITHA----NVITFGEDPGADVRLSGIRTDGPVAFT-LTADGESVEVQLR 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N    + ++ +L   +  A +A+  F    G  +R+     Q   ++ D+ Y
Sbjct: 279 VPGAHNAVNAAGAVAVLRVLGHSLADAARAVEGF---GGTVRRFELHGVQHGVSVYDD-Y 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGD--MCEMGELSQSF------HIDLAEVLSL 398
             +P  + AA+S    +   GEGR IA+          E+ + F      H D   +L +
Sbjct: 335 AHHPTEVAAALSAARTVV--GEGRIIAIQQPHTYSRTQEMYREFAEVLETHADHTVMLDV 392

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-F 457
           Y      + G     +  A     HVHY         +       GD V+   +  CG  
Sbjct: 393 YGAREDPVPGVTGELVSGAFADPEHVHYVPDWQAAADYTARIARPGDYVI---TLGCGNV 449

Query: 458 YRLINLLLE 466
           Y++I  +LE
Sbjct: 450 YQIIPQVLE 458


>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
 gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 31/248 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F ++++ +   ++ + P   V G+  DSR       F A++G   DG+ ++  A++ GA 
Sbjct: 3   FEEIVRGVTTLAVRLAPVD-VRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLGA- 60

Query: 67  LVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLA-VAARL----RSKATIIAITGSVGKT 120
            V V TD       L S    GV  V      LA V+A           + A+TG+ GKT
Sbjct: 61  -VAVLTDSPTVFEDLTSRSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVD-FGIFELGM---SHLGE 174
           TT  ++   L S+ +    +G+   H+   V  +    P   D   IF  G+   +    
Sbjct: 120 TTAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAV 179

Query: 175 IRFLTH-LVRPH-------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--- 223
           +   +H LV+         +AV T +   HL     + E A AKA +F G+   GT+   
Sbjct: 180 MEMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGV---GTLPPR 236

Query: 224 --FLNYDD 229
              +N DD
Sbjct: 237 IAVINADD 244


>gi|269926713|ref|YP_003323336.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790373|gb|ACZ42514.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 474

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV------PLTLARMPVDVD 161
           A I AITGS GK+TT    T  L  I K +        ++ V      P      PV ++
Sbjct: 119 APITAITGSKGKSTT----TSWLGHISKLWRPDTVVAGNLRVSALSMLPQISEDTPVILE 174

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
              ++L    +G          PH++ IT I+  HL+ +   E   ++K  I+   + T 
Sbjct: 175 LSSWQLEAFEVGG-------EAPHVSCITNISYDHLNRYPSFEAYYNSKRWIYRNQKTTD 227

Query: 222 TIFLNYDD 229
               NYDD
Sbjct: 228 YAVFNYDD 235


>gi|222097358|ref|YP_002531415.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Bacillus
           cereus Q1]
 gi|254766038|sp|B9IVY9|MURD_BACCQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221241416|gb|ACM14126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Q1]
 gi|324327812|gb|ADY23072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 29/262 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K       ++           +  L  K  +VV
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKEIEDGACIK-----------DNALYFKGEKVV 268

Query: 285 HHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             G     G H  +N+L  + I  +L    +     L  F   + R +      N+ F+ 
Sbjct: 269 EVGDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY- 327

Query: 341 LIDESYNANPASMKAAISVLSQ 362
             ++S   N  + + A+S  +Q
Sbjct: 328 --NDSKATNMLATEKALSAFTQ 347


>gi|297539591|ref|YP_003675360.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
 gi|297258938|gb|ADI30783.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
          Length = 472

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 151/370 (40%), Gaps = 48/370 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   +A + +  T+         IG  L  A     +  G + + 
Sbjct: 108 IAVAGTHGKTTTTSLIASILAEAGMDPTFV--------IGGKLEAANANAKLGTGEYIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P +AV+T I   H+  +    +++ SA  E  + L   G   +  
Sbjct: 160 EADESDASFL-HLT-PVMAVVTNIDQDHMDTYEHSFDKLKSAFVEFLQQLPFWGMAVVCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSME 282
           DD+    +  +      K + ++G S++A  ++R     ++   M    Q         +
Sbjct: 218 DDANIREILPRV----TKPVMTYGFSEDA--RVRAINVRADDGKMHFTAQRINGVVTEFD 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQG 337
           V  +  G H   N L  + I S L       IKAL  F   +G G+R+           G
Sbjct: 272 VTLNLPGNHYVLNALAAIAIASELNVPDAAIIKALKEF---KGVGRRFERYGEIAVKGGG 328

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            FTLID+ Y  +P  M+A I+      P+   RR+ +             F  D   VLS
Sbjct: 329 AFTLIDD-YGHHPVEMQAVIAAARAAFPN---RRLVMAFQPHRYTRTRDCFE-DFVRVLS 383

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   D  +L RSI +       + ET D L   I +     DV
Sbjct: 384 STDAVLLTEVYSAGEASIVAADTRSLIRSIRIGGKVEPLFVETTDELPEAILNMAQADDV 443

Query: 447 VVVKSSNSCG 456
           V+V  + S G
Sbjct: 444 VIVMGAGSIG 453


>gi|289624983|ref|ZP_06457937.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647041|ref|ZP_06478384.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488536|ref|ZP_07006566.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156877|gb|EFH97967.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|242238098|ref|YP_002986279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya
           dadantii Ech703]
 gi|242130155|gb|ACS84457.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech703]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 143/355 (40%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + +          +IG+P  LA +  +    + 
Sbjct: 102 AQAPIVAITGSNGKST----VTTLVGEMARAAGWAVGVGGNIGLP-ALALLKQESQLYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L   R L        A I  +   H + +  G+++  +AK  I+   E      
Sbjct: 157 ELSSFQLETTRSL----HAAAATILNVTEDHTNRYPLGLQQYRAAKLRIY---EHANVCI 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG     D+ L + +    + W+ V+    L  + 
Sbjct: 210 VNADDALTMPIRGAD-----PRCLSFGVDV-GDYHLNRQQG---EVWLRVKGERVLNTRE 260

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++     G H   N L  L +   +     +A+ AL+ F    G   R++  ++     
Sbjct: 261 IKLT----GQHNYTNALAALALADAVGIPRASALTALTTF---TGLPHRFQLVMDGKGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S   H    + + LY 
Sbjct: 314 WVNDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLQHYLQGDRIRLYC 368

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  G  + AL+  +        +ETM+     I   +  GD+V++  S +C
Sbjct: 369 FGR---DGAQLAALRPEI-----ADQTETMEQAMRLIAGRVRSGDMVLL--SPAC 413


>gi|87199156|ref|YP_496413.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|109892716|sp|Q2G994|MURC_NOVAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87134837|gb|ABD25579.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 474

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 30/183 (16%)

Query: 90  DVLGAL-NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY-- 137
           +V+ AL N++ V  R       +R K+T+ A+ G+ GKTTT  M+   L +  I  T   
Sbjct: 83  EVVAALENRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVACLLDAGGIDPTVIN 141

Query: 138 -ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I SY ++       AR+  D D+ + E   S    +R    L     AV+T I P H
Sbjct: 142 GGIINSYGSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AVVTNIDPEH 188

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L ++   E + SA  E  E +   G   L  D    + +  K      + + ++G S  A
Sbjct: 189 LDHYGSFERVKSAFVEFIENVPFYGAAMLCIDHPEVQAIIPKVRD---RRVVTYGFSAQA 245

Query: 257 DFQ 259
           D +
Sbjct: 246 DVR 248


>gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS6180]
 gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS6180]
          Length = 481

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 24  QGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           QGF    +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L 
Sbjct: 31  QGFSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELG 83

Query: 83  IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           IPV  V D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 84  IPVVLVTDIKKAMSLIAMVFYGNPQEKLKLLAFTGTKGKTT 124


>gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudonocardia sp. P1]
          Length = 534

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSIP 84
           V G ++ + S+ P + F A+ G    G DF   A+  GA  V+ + D      I    +P
Sbjct: 51  VTGATLRAGSVRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGADRPEIRHSRLP 110

Query: 85  VF---GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V       +VLG ++  A+     ++  ++ +TG+ GKTT   +L   L++  ++   +G
Sbjct: 111 VLVHPAPREVLGPVSA-AIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTGLLG 169

Query: 142 SYNNHIGVP 150
           +    + VP
Sbjct: 170 TVRTRVQVP 178


>gi|78221631|ref|YP_383378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
 gi|122063247|sp|Q39YM1|MURD_GEOMG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78192886|gb|ABB30653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 20/145 (13%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +AV+  I   HL  ++  +E   AK  IFE  E T    LN DD     +  +  A 
Sbjct: 176 RPRVAVLLNITEDHLDRYATFQEYIDAKVRIFENQESTDYAVLNVDDPIVAGIAGRVAA- 234

Query: 243 GIKTIYSFGKSKN-------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              T++   + +         D  +    Q  E+ +   + +           G H  +N
Sbjct: 235 ---TVFPMSQQRELAEGVFHRDGVITFRHQGREERFPTARFR---------ITGVHNIEN 282

Query: 296 MLMTLGIVSILTADVDTAIKALSVF 320
           ++ +L    +L  D   A+ A+  F
Sbjct: 283 IMASLAATLLLGCDAKQALAAVEGF 307


>gi|84686334|ref|ZP_01014228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665517|gb|EAQ11993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2654]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L    K     G    +IG  +     P+D +  + EL  
Sbjct: 122 VVAVTGSNGKSTTSALIHHILKVAGKPAQLAG----NIGRGVLDIEPPIDGEVIVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G     +AK  +F EG      + ++  
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGPGGYFAAKRRLFAEGGPDRAVVGVDEP 233

Query: 229 DSFF 232
           +  F
Sbjct: 234 EGLF 237


>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 476

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFE 166
           A  I +TGS GK+TT  ++   L          G    +IG  L L    +   D  + E
Sbjct: 129 AFTIGVTGSNGKSTTTTLIGDILQQTSNKIWVGG----NIGKSLLLQLEEMKPADIVVLE 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +  +     P I+++T I+P HL     I+    AK  I    +++ +  LN
Sbjct: 185 LSSFQLESLSSIKK--SPCISIVTNISPNHLDRHKDIDSYIHAKKNIILHQKQSDSAILN 242

Query: 227 YDDS 230
           YDD+
Sbjct: 243 YDDT 246


>gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
 gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
          Length = 484

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITAGLSFYVSEIDYGA-----DIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLIMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|255322234|ref|ZP_05363380.1| Mur ligase middle domain protein [Campylobacter showae RM3277]
 gi|255300607|gb|EET79878.1| Mur ligase middle domain protein [Campylobacter showae RM3277]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 11/123 (8%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---SYNNHIGVP 150
           A  KLA    L+    II IT S GKT+ K  L      +K  + C     S N   G+ 
Sbjct: 151 ARKKLASMPELK----IIMITASFGKTSIKNFL---FELLKNDFVCRKTPRSVNTLAGLI 203

Query: 151 LTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             +   + V     I E G    G+I  +T  + P IA++  I   H+  F  +E I + 
Sbjct: 204 QDVNNELAVGTQIYIAEAGARLKGDIAQITEFLSPQIAIVGEIGAQHIEYFKTLENIRAT 263

Query: 210 KAE 212
           K E
Sbjct: 264 KLE 266


>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
 gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 143/378 (37%), Gaps = 49/378 (12%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR +       Q +  ++D  Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVVDGG--QNYTVIVD--Y 351

Query: 347 NANPASMKAAISVLSQIS 364
              P S++  +    Q +
Sbjct: 352 AHTPDSLENVLKTAKQFA 369


>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
 gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
          Length = 493

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 152/387 (39%), Gaps = 58/387 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMV 75
           Q  + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +        T++ 
Sbjct: 20  QAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGASAILTDIVGARLAATELG 79

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123
           AS  +L I     DD   AL + A         T+IA+TG+ GKT+              
Sbjct: 80  ASDAALVIS----DDPREALARTAALWFGAQPKTMIAVTGTNGKTSVATFVRQIWTLLGH 135

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEIRFLT 179
           E + +  + ++  ++   ++      P+TL R   +    G+    M   SH  + R L 
Sbjct: 136 EAINLGTTGVEGAWSAPLAHTTP--EPITLHRALAEAAREGVTHAAMEASSHGLDQRRLD 193

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAK 238
             V    A  T     HL   +  E+  +AKA +F   L +     +N D      + A 
Sbjct: 194 G-VTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINIDVDRGVDMAAI 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IG 289
           + A     I + G+  + D  L           ++V   G+ +  +HHG         IG
Sbjct: 253 AKARNCPVI-TVGRD-SGDLHLGN---------IQVDATGQVVCFMHHGKQYVRRLGLIG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A+N+++   +V     +       L       GR  +     + G    +D  Y   
Sbjct: 302 GFQAENVMLAAALVIACGEEPPHVFDTLEHLSTVRGR-MQLAGTRDNGATVFVD--YAHT 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P ++  A+  L    PH  GR IA++G
Sbjct: 359 PDAIATALKAL---RPHVVGRLIAIVG 382


>gi|156935392|ref|YP_001439308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533646|gb|ABU78472.1| hypothetical protein ESA_03250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 185/457 (40%), Gaps = 63/457 (13%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVTPRVMDTRISPP---GLDKLPEEVERHLGSLNEN 61

Query: 69  -VVNTDM-VASIG-SLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++N D+ VAS G +L+ P        G   +  + +  R  ++A +IAITGS GK+T  
Sbjct: 62  WLMNADLIVASPGIALAHPALSAAAEAGVEIVGDIELFCR-EAQAPVIAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +T  +  + K          +IG+P  L  +    +  + EL    L      T  ++
Sbjct: 119 --VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLEEGRELYVLELSSFQL----ETTFSLK 171

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              A I  +   H+  +  G+++  +AK  I+   E      +N DD+    ++      
Sbjct: 172 AAAATILNVTEDHMDRYPLGLQQYRAAKLRIY---ENATVCVVNADDALTMPVRGAD--- 225

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLM 298
             +   SFG     D+ L + +    + W+ V+    L  K M++V    G H   N L 
Sbjct: 226 --ERCVSFGIDV-GDYHLNRQQG---EIWLRVRGEKVLNVKEMKLV----GQHNYTNALA 275

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +         +++KAL+ F    G   R++ A        I++S   N  S +AA++
Sbjct: 276 ALALADAAGLPRASSLKALTTFG---GLAHRFQLAYEHNGVRWINDSKATNVGSTEAALN 332

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L     H +G    +LG   +  + S   H    + + LY        G  + AL+  +
Sbjct: 333 GL-----HLDGTLHLLLGGDGKSADFSPLAHYLTGDRVRLYCFGR---DGDALAALRPEI 384

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +     +TM+     I   +  GD+V++  S +C
Sbjct: 385 SERM-----DTMEEAMKVIAGRVQPGDMVLL--SPAC 414


>gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae A909]
 gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
 gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae A909]
 gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
          Length = 484

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITAGLSFYVSEIDYGA-----DIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLVMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|47565784|ref|ZP_00236823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228987057|ref|ZP_04147182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47557064|gb|EAL15393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228772651|gb|EEM21092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 112/260 (43%), Gaps = 25/260 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +    +G+ +  V
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNAL--YFKGEKVVAV 270

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISNRKFY--- 327

Query: 343 DESYNANPASMKAAISVLSQ 362
           ++S   N  + + A+S  +Q
Sbjct: 328 NDSKATNMLATEKALSAFTQ 347


>gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae NEM316]
 gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
 gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
          Length = 484

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITAGLSFYVSEIDYGA-----DIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLVMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|218708487|ref|YP_002416108.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus LGP32]
 gi|254766031|sp|B7VJ04|MURC_VIBSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218321506|emb|CAV17458.1| UDP-N-acetylmuramate-alanine ligase [Vibrio splendidus LGP32]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             +  DD    EL+   S     + + ++G S++AD ++  + Q  +Q    V  +GK+ 
Sbjct: 230 AVMCVDDPVVRELIPQVS-----RQVITYGFSEDADIRIENYVQEGQQGKFTVVREGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           +++  +  G H   N L     +++ T D  +    L      EG G+R+         +
Sbjct: 285 LDITLNIPGRH---NALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLGEYETGK 341

Query: 337 GFFTLIDESYNANPASMKAAI 357
           G   L+D+ Y  +P  +   I
Sbjct: 342 GVAMLVDD-YGHHPTEVDVTI 361


>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 734

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 164/432 (37%), Gaps = 47/432 (10%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           + I P  A+FA         +  + A +KGA +++    +        IP   V ++  A
Sbjct: 323 QKIKPGCAYFAA------DKETAVAAFEKGASVIITTQPIE------KIPNIVVANLDTA 370

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++ AV  +       +A+  S  K     M+   LSS  +T   I   NN+  +   + 
Sbjct: 371 LSRTAVFIKSALGMWTVAVMDSPEKINPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMF 430

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA----PAHLSNFSGIEEIASAK 210
                 +  +  +   + G +  ++      +A++T+      P  L+    IEE    K
Sbjct: 431 ASTPKTEAAVINVSCVNGGNVERVSQTANFDVAILTSTVVSKNPRELTKPELIEE----K 486

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            ++  G+ ++G + +N DD          +  GI TI     +   D ++  +       
Sbjct: 487 LKVCGGMNESGAVIINIDD---------KNLAGIFTIPQDIITIGVDNRMADYY----AD 533

Query: 271 WMEVQLQGKSMEVVHHGIGYHM---------AQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +E+     S +++H    YH+             L T  +  I+       I A+  + 
Sbjct: 534 NIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATFALGEIMGIPPKQIIPAIEKYR 593

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  G         N+    +I +  N    S+ AA+  L  +    + RRIAVL ++ + 
Sbjct: 594 PSTG----LTTVRNERGIYVISDFENEAVESVGAALKELCTMQLPPDSRRIAVLSEVGDG 649

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSS 440
            E     +  +  +++  ++      G     L K A  +S  V    T   L  F++ +
Sbjct: 650 DEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADLKSKFVIKLNTRQALTEFLKLN 709

Query: 441 LVDGDVVVVKSS 452
           L D D V+ K S
Sbjct: 710 LRDNDAVLFKGS 721


>gi|325679015|ref|ZP_08158613.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
 gi|324109519|gb|EGC03737.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGS GKTTT  +++  L +  K          H+G  +  A +P+       ++ +  
Sbjct: 122 ALTGSDGKTTTTTLVSEFLKAEGKRV--------HLGGNIGKALLPLVETISETDVAVCE 173

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           L   + ++    P +A IT I P HL+    +EE   AK  I           L+ DD 
Sbjct: 174 LSSFQLISMRESPDVAGITNIRPNHLNVHGTMEEYTQAKCNILYHQNAYSKAILSLDDE 232


>gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
 gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 34/122 (27%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----GVPLTLARMPVDVD 161
           ++  +IA+TGS GK+TT  ++                  +HI    G P  LA    ++ 
Sbjct: 118 TQPRVIAVTGSNGKSTTAALI------------------HHILVENGRPAQLAG---NIG 156

Query: 162 FGIFELGMSHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            G+ ++  +H GE+       + T L R   P +AV T ++P HL   +G+    +AK  
Sbjct: 157 RGVLDIEPAHDGEVVVLELSSYQTDLARSMTPDVAVFTNLSPDHLDRHAGVGGYFAAKRR 216

Query: 213 IF 214
           +F
Sbjct: 217 LF 218


>gi|323935140|gb|EGB31507.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1520]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 179/460 (38%), Gaps = 69/460 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P  L  +  + +  + EL    L     L  
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLEDECELYVLELSSFQLETTSSLQA 172

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 173 VA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D+ L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L     H +G    +LG              D + +    N  +V L  F     +
Sbjct: 330 ALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLNGDNVRLYCFGRDGAQ 376

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 377 LASLRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|261416751|ref|YP_003250434.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373207|gb|ACX75952.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328181|gb|ADL27382.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 453

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVD 161
           + +SKAT+  +TG++GK +T  M++  L    K  A  G++    GVP L L        
Sbjct: 103 QTQSKATV-GVTGTLGKGSTVSMISHILDKCGKANAIGGNF----GVPALDLLEDETPDR 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL        + +T  V P + V+  ++  HL     +EE   AKA +    ++ G
Sbjct: 158 ISILELS-----SFQLMTLSVSPDVGVVLRVSTEHLDWHKSVEEYRDAKANLVRWQKREG 212

Query: 222 T 222
           T
Sbjct: 213 T 213


>gi|77919795|ref|YP_357610.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
 gi|109892717|sp|Q3A2G7|MURC_PELCD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77545878|gb|ABA89440.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 141/352 (40%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  M++  LS   I  T   IG   + IG    L +       G F + 
Sbjct: 108 IAVAGTHGKTTTTSMVSTVLSKSGIDPT-VVIGGRLDSIGSNAKLGQ-------GKFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL   + P IAV+T +   HL  +S ++EI     +    +   G   L  D
Sbjct: 160 EADESDGSFLK--LSPIIAVVTNVDADHLDYYSDLDEIKRTFVDFINKIPFYGVAILCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + L  +      K   ++G S  AD+  ++     E++   V  QG+ + ++    
Sbjct: 218 DPNVQALIPQVG----KRFVTYGMSTQADYNAQEISYQEERTTFTVCWQGERLGQLSIRM 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L    +   +A   F    G  +R++    QG   ++ + Y 
Sbjct: 274 PGQHNVLNALAAVAVARELEIPFEQIAEAFCDFC---GVQRRFQPKY-QGRDIMVVDDYG 329

Query: 348 ANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +PA +K  ++         V++   PH   R  A+  +      ++  +  D   V+ +
Sbjct: 330 HHPAEIKVTLAAACSGWNRRVVAVFQPHRYSRTQALFDEF-----VTAFYQADHLVVMDI 384

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
           Y      + G     L + +    H  VHY    + +   ++  +  GD+V+
Sbjct: 385 YAAGETPIPGVEARLLAEGIAGHGHRDVHYCPDAEAVAAHLREVVQAGDLVL 436


>gi|310816183|ref|YP_003964147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
 gi|308754918|gb|ADO42847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 9/127 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++ +TGS GK+TT  +L   L    +     G+    + + L  AR   D +  + E
Sbjct: 119 RPRVVTVTGSNGKSTTSALLHHILEECGRPAQLAGNIGRGV-LDLPPAR---DGEVVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
           L        R LT    P IAV+T ++P HL   +G+    +AK  +F EG      I +
Sbjct: 175 LSSYQTDLARALT----PDIAVLTNMSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGV 230

Query: 226 NYDDSFF 232
           + ++  +
Sbjct: 231 DENEGRY 237


>gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
 gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
          Length = 495

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 21/240 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ + G  +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G   VV 
Sbjct: 6   LRDLLGPWVPGAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
             +  A+ G +     +PV  +  +   L+ LA     +   K T+I +TG+ GKTTT +
Sbjct: 66  EAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFL 178
           +L    + + +T A +G+  N    H+          VDV   + EL    + L  +   
Sbjct: 126 LLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELAEKGATLTAMEVS 185

Query: 179 THLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +  H         AV T ++  HL     +    SAK  +F    + G   LN DD 
Sbjct: 186 SHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFS-EHQVGQAILNADDE 244


>gi|110803060|ref|YP_699195.1| FolC bifunctional protein [Clostridium perfringens SM101]
 gi|110683561|gb|ABG86931.1| FolC bifunctional protein [Clostridium perfringens SM101]
          Length = 441

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T+++ P I V+T+I+  H++     IEEIA  K  I +G  
Sbjct: 137 VDYAVLEVG---LGGRLDATNVILPEIVVLTSISLDHMNILGNTIEEIAKEKCGIIKG-- 191

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQ 275
             G   ++Y  ++   E++K + + LG      + K  +N      K  Q      +EV 
Sbjct: 192 --GVPVISYPQEEKALEVIKERCNELGCNLEVVYTKDIRNIIIDKEKHVQ-----KIEVS 244

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTL 300
           L+ + +++    +G H  +N L+ L
Sbjct: 245 LEDEILKIDLCLLGDHQVKNFLLAL 269


>gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
 gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
          Length = 532

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 151/412 (36%), Gaps = 79/412 (19%)

Query: 24  QGFVNGISIDSRSIAPQE-----------AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           +  +N +  DSR +               AFFA+ G H DG  FI  A++ GA  +    
Sbjct: 24  KSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDGKKFINSAIENGAVCIFYEG 83

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIAL 130
           D+  +     I    V+DV   ++K++         T  +I +TG+ GK++T   +   L
Sbjct: 84  DL-NNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRTLGVIGVTGTEGKSSTVSFIFQLL 142

Query: 131 SSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFGIFELGMSHLGE-------IRFLTHLV 182
           +   K      +    I G  +         +  + +L ++ + +       +   +H +
Sbjct: 143 NLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQLRLAQMRDSGCSYAVVEASSHGL 202

Query: 183 RPHIA----------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIF--LN 226
            P  A          V   +   HL     IE+    KA +F  L+K       IF  +N
Sbjct: 203 SPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYDKANLFRALDKNPGKGFPIFGIVN 262

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y+D         +     K +Y F        +L+  K+  E       L  K +E    
Sbjct: 263 YEDPSAPYFMEATQ----KNVYPFST------ELKDLKKIEEYKG----LFAKDIEESSS 308

Query: 287 GIGYHMA--------------------QNMLMT-LGIVSILTADVDTAIKALSVFHPKEG 325
           GI + +                     +N+L + L +  I   D+   I+ L +  P +G
Sbjct: 309 GIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKG 368

Query: 326 RGKRYRCALNQGFFTLIDESYNANPAS-MKAAISVLSQISPHGEGRRIAVLG 376
           R         Q F  LID  Y   P+S M    S+  +I   G G+ I++ G
Sbjct: 369 R--MMLIDEGQDFEVLID--YAHTPSSFMTIFPSIKERIKKSG-GKVISLFG 415


>gi|301026104|ref|ZP_07189579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
 gi|300395675|gb|EFJ79213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---ICV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGINM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|284929364|ref|YP_003421886.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
 gi|284809808|gb|ADB95505.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
          Length = 501

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 40/298 (13%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG 141
           PVF   D+L AL          S    I + G+ GKTTT  ++   L  + I  T    G
Sbjct: 134 PVFHRSDILAAL---------ISDYKSIGVAGTHGKTTTSSLIGYMLLEAGIDPTIIIGG 184

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             +   G     AR+  +  + + E+  S    I+       PHI VIT I   H  ++ 
Sbjct: 185 EVDAWDGN----ARIGAEKGYLVAEVDESDGSLIKH-----HPHIGVITNIELDHPDHYQ 235

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQ 259
            ++++ +           T  IF    D     L  +  S  L     YS   +K AD+ 
Sbjct: 236 NLDDVIN-----------TFQIFAAQCDILVGSLDCEIISSYLSPHITYSLDFNKQADYT 284

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           ++     ++ +  EV  +G  +  ++  + G H   N L  + +   +  +    + +L 
Sbjct: 285 VKNLVNDNKGARAEVWERGIYLGKINLTVLGNHNVSNTLAAIAVGRKIGLEFSVIVDSLL 344

Query: 319 VFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            F  PK    KR  C       T ID+ Y  +P+ +KA +S       +    RI V+
Sbjct: 345 NFQSPKRRFEKRGYC----NEITFIDD-YAHHPSEIKATLSAARSKIDNKLANRIVVI 397


>gi|239994434|ref|ZP_04714958.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii ATCC
           27126]
          Length = 481

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 51/370 (13%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+      A +    T+  IG   N  G    L +         + + 
Sbjct: 118 IAVAGTHGKTTTTSLISTIFAEAEYDPTF-VIGGLLNSAGTNARLGK-------SRYLIA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++V+T I   H+  + G   ++     +    L   G   +  
Sbjct: 170 EADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFSKVKDTFVDFLSNLPFYGQAIVCG 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHH 286
           DD+  + ++ +   +G ++I ++G   + D++         + ++  ++ + + +++  +
Sbjct: 228 DDANIQEIRPR---IG-RSILTYGFESHNDYRAENVSLSFGKANFTVIRPEREPLDITLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N L  + + +    D D  I+AL+ F    G G+R+        ++G   L+
Sbjct: 284 LTGNHNVLNALAAIAVATDEGVDDDAIIRALASFG---GIGRRFEQLGTFTTSKGEVCLV 340

Query: 343 DESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           D+ Y  +P  ++A I+                PH   R   +  D  E+  LS    +D 
Sbjct: 341 DD-YGHHPTEVRATIAAARANWPDKRLVMVYQPHRFTRTRDLYEDFVEV--LSS---VDA 394

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +L +Y  S   + G    A   AL RSI         Y    D L   + + + DGD+
Sbjct: 395 LLLLDVYAASEQPIEG----ADSKALCRSIRQRGQIEPVYVGDKDALPAILANIMQDGDI 450

Query: 447 VVVKSSNSCG 456
           V+ + + + G
Sbjct: 451 VMTQGAGNIG 460


>gi|227514825|ref|ZP_03944874.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086815|gb|EEI22127.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|299783027|gb|ADJ41025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus fermentum
           CECT 5716]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 110 IIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           +I++TGS GKTTT  ++   +A+ +  +       Y  +IGV  +     V  + G  + 
Sbjct: 122 LISVTGSNGKTTTTTLIEQMVAMGNPHRV-----EYAGNIGVSFS----KVAEELGPDDT 172

Query: 168 GMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            ++     + L     RPHIAVIT I   HL      +    AK  I     K   + +N
Sbjct: 173 IVTEASSFQLLGAPTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDDYLVIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +D   ++ L  +++A    T+  F  S+ A  Q   +++  +  W + ++
Sbjct: 233 WDKEEWQKLAKRTNA----TVVPF--SRLAKSQEGAYQKGGDLYWRQERI 276


>gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
 gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  ++   L+   +     G    +IG  +     P D    + EL  
Sbjct: 122 VIAVTGSNGKSTTSALIHHVLTEAGRAAQLAG----NIGRGVLDIDPPEDSGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGLGGYFAAKRRLF 218


>gi|50122736|ref|YP_051903.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|59798236|sp|Q6D0I4|MURC_ERWCT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49613262|emb|CAG76713.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  +   +G + I ++G S +AD ++  ++Q   Q    ++ 
Sbjct: 221 LPFYGQAVMCIDDAVIRELLPR---VG-RHITTYGFSDDADVRVAGYRQTGAQGHFTLER 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + K+ + V  +  G H A N    + + +    D +  ++AL  F   +G  +R+
Sbjct: 277 KDKTLLNVTLNAPGRHNALNAAAAVAVATDEGIDDEAILRALERF---QGTSRRF 328


>gi|32490954|ref|NP_871208.1| hypothetical protein WGLp205 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173033|sp|Q8D2Z7|MURC_WIGBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25166160|dbj|BAC24351.1| murC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 130/306 (42%), Gaps = 57/306 (18%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L+IPV    + L  L        +R K  II ++G+ GKTTT    T  +S I K    
Sbjct: 93  KLNIPVVKRAEFLSEL--------MRFKYGII-VSGTHGKTTT----TSIISYIYKEAKL 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVRPHIAVITTI 192
             +Y       L   R+    D+G   LG S          +  FL    RP I+V+T I
Sbjct: 140 FPTY-------LYGGRLNNSDDYG--NLGNSKYWISEADESDNSFL--FFRPIISVVTNI 188

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL ++ G  +++  +  +    +   G   L  DD   E+   K   L  K I ++G
Sbjct: 189 EKDHLESYQGNFKKLKESFIKFLHNIPFYGYSVLCLDD--IEI--KKIIPLINKKIVTYG 244

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            ++N+DF + K+ Q +++    V +  Q + ++ V + +G H A      L I + +T  
Sbjct: 245 FNRNSDFCITKFFQSNKKIIFIVYIKHQKRYLKFVSNLLGKHNA------LNITAAITIA 298

Query: 310 VDTAIK---ALSVFHPKEGRGKRYR-------CALN--QGFFTLIDESYNANPASMKAAI 357
           +   IK    L+      G  +R+          LN  +G  T++D+ Y  +P  +K  I
Sbjct: 299 IKEGIKYNIILNSIKKFPGINRRFDFINKYDLSNLNNKKGTITIVDD-YGHHPTELKLTI 357

Query: 358 SVLSQI 363
             + +I
Sbjct: 358 KSVKKI 363


>gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
 gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
          Length = 499

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 146/364 (40%), Gaps = 32/364 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+++    FFA+ G   +G D++     +G  +VVV   +     +L + V  V 
Sbjct: 33  LATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQGCRVVVVPEVVKLD-ETLDLAVIRVP 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----- 144
           D L ++        L   ++I A+TG+ GK++          +I  + A +G++      
Sbjct: 92  DTLMSMTAFITKFALPYPSSICAVTGTNGKSSISYYSAQIAKAINLSSAIVGTFGVGLLD 151

Query: 145 ----NHIGVPLTLARMPVDVDFG-------IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               +    P  L+   + + F         FE     L + R     +    A+ + ++
Sbjct: 152 DLKPSEQTTPDLLSMHTLAITFASQGVEHMTFEASSHALDQGRIEGLPIE--TAIYSNLS 209

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-K 252
             HL     +   A AKA++F    +     +  DD + +++   +       +YS+  +
Sbjct: 210 RDHLDYHGSMAAYAEAKAKLFR-FPQLKRAVICIDDEYSDIMLDAAAC----PVYSYSLQ 264

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +NADF        +++   ++++ GKS  V    +G     N +  L        D   
Sbjct: 265 HENADFFASNLNYLTDRVEFDLKVLGKSYSVSLPLLGEFNVANAIAALAAHWDQVEDKAQ 324

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            I ALS+     GR +     L      +ID  Y   P++++ A+  L     H +GR  
Sbjct: 325 LISALSLLSGAPGRMQMVN--LQSAPLVVID--YAHTPSAIEVALKALRL---HNKGRLT 377

Query: 373 AVLG 376
            + G
Sbjct: 378 CIYG 381


>gi|309812642|ref|ZP_07706386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
 gi|308433337|gb|EFP57225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
          Length = 501

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 23/160 (14%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S  IPV+G         ++ +A R+R +   A  + ITG+ GKTT   ML     S+ K 
Sbjct: 117 SRGIPVWG---------EVELAWRMRPREGGAPWLTITGTNGKTTAVTML----ESMLKA 163

Query: 137 YACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                    ++G+PL  A + P   D    EL    L      +  V P+ +    +AP 
Sbjct: 164 QGLRAVAAGNVGMPLLEAVLHPQPYDVIAVELSSFQL----HWSRTVSPYASCCLNVAPD 219

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           H+      EE    K  ++E  +       N DD   E +
Sbjct: 220 HIDWHGSYEEYKRQKGRVYERTQV--ACVYNVDDPATEAM 257


>gi|290969172|ref|ZP_06560697.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780678|gb|EFD93281.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 464

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 109/259 (42%), Gaps = 20/259 (7%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ML  + +         IG   +++    TL   P       + +  
Sbjct: 112 IAVAGAHGKTTTSSMLGQVFIEGRLHPTIVIGGEVDYLHSNSTLGTGP-------YVIAE 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYD 228
           +   +  FL     P IAV+T I   H+ ++  +  + +A  +  + L+ + G   L +D
Sbjct: 165 ADESDGTFLKE--HPAIAVVTNIDADHMDHYGSMAHVIAAFKQFIQRLDPQDGMAVLCFD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     L ++   +G +T  S+G +++A++  +       + + +V  +   +  V   +
Sbjct: 223 NEHIRRLASQ---VG-RTYISYGFAEDAEYTAKNLYYKEGKHYFDVYRRQVLLGTVCLQV 278

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L T+ +             AL  FH   G  +R++     G   ++D+ Y 
Sbjct: 279 PGRHNVLNALATIAVSLHCGLPFAEIAAALCRFH---GAKRRFQTKGYVGTIRVVDD-YA 334

Query: 348 ANPASMKAAISVLSQISPH 366
            +P  +KA ++    +  H
Sbjct: 335 HHPTEIKATLAAAGDMGTH 353


>gi|309807734|ref|ZP_07701668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168994|gb|EFO71078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 19/260 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N+D     +L+ +        +    +S  AD+ +       EQ ++E Q   + M++
Sbjct: 227 IANFDQK--NILEQELSLTKANVVTFSEESTQADYYI------GEQ-YLESQADHEIMKI 277

Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               I G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + 
Sbjct: 278 SDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMTYNNRRIY 334

Query: 343 DESYNANPASMKAAISVLSQ 362
           ++S + N  +   AI   SQ
Sbjct: 335 NDSKSTNIEAASVAIPSFSQ 354


>gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
 gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 150/373 (40%), Gaps = 40/373 (10%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+  I + +       IG   +++     L +       G F +  
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDYLKGSSCLGK-------GHFSVVE 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + PH  VIT I   H+ ++  ++ + +A  E  E L + G   +  D+
Sbjct: 161 ADESDGSFLK--LHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPEAGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                + ++      +T  ++G   N D+  +           +V  +G ++  +   + 
Sbjct: 219 ENIRYVMSRVK----RTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGINISRISLRVP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G H   N L    IV+     V+     KAL  F    G  +R+    +     ++D+ Y
Sbjct: 275 GEHNVLNSLAAF-IVAHECCGVENRFITKALGKF---IGAKRRFETKGHVAGVWVVDD-Y 329

Query: 347 NANPASMKAAISVLSQISPHG--------EGRRIAVLGDMCEMGELSQSF-HIDLAEVLS 397
             +P  +KA +    ++  H            R ++L D     E + +F   D   +  
Sbjct: 330 AHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKD-----EFATAFTSADEIYMTD 384

Query: 398 LYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y+     ++G     + DA+  + H  VHY  ++D +   +   +   D+V+   + S 
Sbjct: 385 IYSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRPNDLVITMGAGSI 444

Query: 456 GFY--RLINLLLE 466
             Y  +L+ +L E
Sbjct: 445 NQYGPKLLAILEE 457


>gi|157165282|ref|YP_001466906.1| Mur ligase middle domain-containing protein [Campylobacter concisus
           13826]
 gi|112800277|gb|EAT97621.1| Mur ligase family protein [Campylobacter concisus 13826]
          Length = 474

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL KL  +  L+    II IT S GKT+ K  L   L      Y    S N   G+   +
Sbjct: 147 ALKKLGASKELK----IILITASYGKTSIKNFLFEILKDSFVCYKTPRSVNTMAGIIKDI 202

Query: 154 -ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +       I E G    G+I  +T  + P I ++  I   H+  F  ++ I + K E
Sbjct: 203 NENLSEQTQIYIAEAGARLKGDILEITKFLNPQIVIVGEIGAQHIEYFKTLDNIRTTKLE 262

Query: 213 IFEGLEKTGTIFL 225
             +  E+    FL
Sbjct: 263 ALQS-ERLQRAFL 274


>gi|187732828|ref|YP_001878898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii CDC 3083-94]
 gi|187429820|gb|ACD09094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           CDC 3083-94]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 54/365 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIARAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P  L  +  + +  + EL    L     L  
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVLELSSFQLETTSSLQA 172

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 173 VA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D+ L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVL 360
           A++ L
Sbjct: 330 ALNGL 334


>gi|332518984|ref|ZP_08395451.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044832|gb|EGI81025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 28/160 (17%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           ++V  + S +IPV         ++++  A++  +KATI+ ITGS GKTTT  +    LS 
Sbjct: 79  ELVQKLISNTIPV---------ISEIEFASKY-TKATIVGITGSNGKTTTASLTHHILSQ 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL---GEIRFLTHLVRPHIAVI 189
                  +G   N   +  + A+  ++ ++  + L +S     G I F     +P+IA+I
Sbjct: 129 ----ELNVGLAGN---IGDSFAKQILEKNYKNYVLEISSFQLDGIIDF-----KPNIAII 176

Query: 190 TTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           T I P HL  +    E   ++K  I   L +T   +L YD
Sbjct: 177 TNITPDHLDRYDYKFENYINSKFRI--ALNQTKEDYLIYD 214


>gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella cf. novicida 3523]
          Length = 475

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 20/223 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S+DSR    + AF A+KG   DG+ +I   + K   LV+ ++            +F
Sbjct: 23  IESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAKDISLVLTDSHEFED----QKRIF 78

Query: 87  GVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + ++   L+ LA      +    II ITG+ GKT+    +   L    +    +G+  N
Sbjct: 79  YIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKTSISSYIAQFLDLSSQKTLLLGTNGN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192
            I  P         +D       +S+    + L   V  H             +AV + +
Sbjct: 139 GI-YPDLKESTHTTLDILSLYQTISYHKNYQNLVMEVSSHSLDQKRTEGLDFDVAVFSNL 197

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +  HL     ++    AKA++F+  +      +N DD + + L
Sbjct: 198 SHDHLDYHKSMDNYFEAKAKLFQ-FKSLKKAIINIDDEYGQRL 239


>gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 24  QGFVNGISIDSRSIAPQE-----------AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           +  +N +  DSR +               AFFA+ G H DG  FI  A++ GA  +    
Sbjct: 45  KSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDGKKFINSAIENGAVCIFYEG 104

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           D+  +     I    V+DV   ++K++         T  +I +TG+ GK++T
Sbjct: 105 DL-NNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRTLGVIGVTGTEGKSST 155


>gi|302877576|ref|YP_003846140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580365|gb|ADL54376.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
          Length = 463

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 96/230 (41%), Gaps = 28/230 (12%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
           A Q  F A     +DG + I  A+  G   V +    +A   +  IPV G D  L A   
Sbjct: 53  ADQLFFGAFTDTLFDGIELI--AISPG---VPLADPYIARAAARGIPVVG-DIELFAQQL 106

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            A  A L  K  ++AITGS GKTT   ++     +        G+ +  + + + L R  
Sbjct: 107 RASHAPLPGK--VLAITGSNGKTTVTSLVEHLCRAAGLDAVAAGNISPAV-LDVVLQRGD 163

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +  + EL    L   R LT       A +  ++  HL  + G++E A+AK +I  G 
Sbjct: 164 KQPEVWVLELSSFQLETTRSLTA----DAATVLNVSEDHLDRYLGMDEYAAAKQQILGGC 219

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNA---DFQLRK 262
                  LN DD       A+S A+   T    SFG +K A   DF + +
Sbjct: 220 RLQ---VLNRDD-------ARSIAMKHTTSDCVSFGLNKPASESDFGIER 259


>gi|254976246|ref|ZP_05272718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-66c26]
 gi|255093633|ref|ZP_05323111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CIP 107932]
 gi|255315381|ref|ZP_05356964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-76w55]
 gi|255518046|ref|ZP_05385722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-97b34]
 gi|255651162|ref|ZP_05398064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-37x79]
 gi|260684228|ref|YP_003215513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
 gi|306521010|ref|ZP_07407357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-32g58]
 gi|260210391|emb|CBA64782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP ++ I  I   HL+    +E+   AKA IF          LNYDD   + L  K +A 
Sbjct: 177 RPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDFCVLNYDDEVVKSLADKCNA- 235

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             K IY F ++K  N    L       +       L    + +     G H  +N +  +
Sbjct: 236 --KVIY-FSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVSLP----GGHNLENCMAAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            I  +   D++     L  F   E R +  R   N      +++S   NP S   AI
Sbjct: 289 AIAYVCKIDLEVIKDVLMTFKGVEHRQEFVR---NLDNVIYVNDSKGTNPDSTIKAI 342


>gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
 gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
          Length = 484

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S DSR I+    FFA KG  +   +++  A+  G    V   D       + IPV  
Sbjct: 37  NALSYDSRQISSDTLFFA-KGATF-KKEYLDSAITAGLSFYVSEIDY-----GVDIPVIL 89

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTI-----ALSSIKKT 136
           V+D+  A++ ++++     ++K  ++A TG+ GKTT       ML +      LS++  T
Sbjct: 90  VNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTT 149

Query: 137 YACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRP------HIA 187
                 + +H+  P  L L RM         E  M+HL  E+    +L +        + 
Sbjct: 150 LDGKSFFKSHLTTPESLDLFRMMATA----VENQMTHLVMEVSSQAYLTKRVYGLTFDVG 205

Query: 188 VITTIAPAHL 197
           V   I+P H+
Sbjct: 206 VFLNISPDHI 215


>gi|330811578|ref|YP_004356040.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379686|gb|AEA71036.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 149/366 (40%), Gaps = 43/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCL 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVH 285
           DD    E+L      L  +   ++G  + AD +    +Q   Q++  V +   + ++V  
Sbjct: 229 DDPVVREILP-----LIKRPTMTYGFGEEADVRAINVRQQGMQTFFTVLRPDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNALATICIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I  +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPTEVAAVIKAVRGGWPE---RRLVMVYQPHRYSR-TRDLYDDFVQVLADANV 395

Query: 402 ---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVK 450
                V+ +G   +   D+      +     +D +++         ++  L  GD+++ +
Sbjct: 396 LLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPLLRAGDILLCQ 455

Query: 451 SSNSCG 456
            +   G
Sbjct: 456 GAGDIG 461


>gi|322513884|ref|ZP_08066963.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
 gi|322120283|gb|EFX92230.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 163/390 (41%), Gaps = 65/390 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IAI G+ GKTTT  M+++  +   +  T+   G       N H+G    L          
Sbjct: 121 IAIAGTHGKTTTTAMISMIYTEAQLDPTFVNGGLVKSAGKNAHLGASRYL---------- 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++V+T I P H+  + G  E++ +   +        G 
Sbjct: 171 ---IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFLSNSPFYGL 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
             +  DD   E +   +  +G + + ++G S  AD+++  ++Q   Q  +  V   G+ +
Sbjct: 226 AVMCADD---ETVMEIAPQVG-RQVVTYGFSDKADYRIEDYQQTGFQGHYTVVCPNGERI 281

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQG 337
           +V+ +  G H A N    L +        +  + AL+ F   +G G+R+          G
Sbjct: 282 DVLLNVPGKHNALNATAALAVAKEEGIGNEAILAALADF---QGAGRRFDQLGSFIRPNG 338

Query: 338 FFTLIDESYNANPA----SMKAAIS------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              L+D+ Y  +P     ++KAA S      V+    PH   R   +  D  ++  LSQ 
Sbjct: 339 KVMLVDD-YGHHPTEVDVTIKAARSGWEDKRVVMIFQPHRYSRTRDLFDDFVQV--LSQ- 394

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSS 440
             +D   +L +Y      + G    A   AL RSI        +  S+T D L   +   
Sbjct: 395 --VDALIMLEVYAAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-DQLGEVLDQI 447

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           + DGD+++ + + S    R+   L E + A
Sbjct: 448 IQDGDLILAQGAGSVS--RISRGLAESWKA 475


>gi|229031544|ref|ZP_04187544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
 gi|228729833|gb|EEL80813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 26/206 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K       +++   C            K  +VV
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKEIEDGACIKENALCF-----------KGEKVV 268

Query: 285 HHG----IGYHMAQNMLMTLGIVSIL 306
             G     G H  +N+L  + I  +L
Sbjct: 269 EVGDIVLPGQHNLENILAAMSIAKLL 294


>gi|191167754|ref|ZP_03029561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
 gi|190902180|gb|EDV61922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 33/261 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVL 360
             I++S   N  S +AA++ L
Sbjct: 314 RWINDSKATNVGSTEAALNGL 334


>gi|330957969|gb|EGH58229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCV 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S+ AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTMTYGFSEEADVRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTL 341
           +  G H   N L T+ I +      +  +K LS F   +G G+R++      +  G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVKGLSGF---QGVGRRFQIYGELPVEGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|317055687|ref|YP_004104154.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
 gi|315447956|gb|ADU21520.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
          Length = 464

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGS GKTTT  +++  L S  K          H+G  +  A +P+       ++ +  
Sbjct: 121 ALTGSDGKTTTTTLVSEFLKSEGKRV--------HLGGNIGKALLPLVETISETDVVVCE 172

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           L   + ++    P +A IT I P HL+    +EE   AK  I +         L+ DD 
Sbjct: 173 LSSFQLISMRESPDVAGITNIRPNHLNVHGTMEEYTLAKCNILDHQNAYARSVLSLDDE 231


>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 33/224 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +    H     +AV T +   HL     +EE   AK  +F  L
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224


>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
           patens]
 gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 48  GPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARL 104
           GPH    + +L A Q     G+ V + D+ A+I +  +P F         ++L   AA L
Sbjct: 108 GPHK--RETLLKASQLVLSPGVPVTHPDIAAAIQA-GVPAF---------SELGFAAAAL 155

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVD 161
                + A+TG+ GK+T    +T   S I +          ++G PL+   L  +    +
Sbjct: 156 PGNIKVAAVTGTNGKST----VTTFTSQILRNAGVRTFVGGNLGTPLSDGVLQCLAFPAE 211

Query: 162 FGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              F + +  +   +  L     P  AVI  + P HL     +E   S K  +F  +E +
Sbjct: 212 DPPFSVAVVEVSSYQLELPGSFHPKAAVILNLTPDHLERHKSMEAYGSIKCRVFSRMEAS 271

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +   D     L A S +   +           D   R+       + +E +L   S
Sbjct: 272 DVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDARRAIVVVPTTGVEARLYLSS 331

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           ++ V    G H A N     G  ++L   +D  +++
Sbjct: 332 LQAV----GTHNAHNA----GTAALLALSLDVGLQS 359


>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 33/224 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +    H     +AV T +   HL     +EE   AK  +F  L
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224


>gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Kitasatospora setae
           KM-6054]
          Length = 514

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 25/252 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++ DSR++ P + + A  G ++ G  F   A   GA  V+ +        +  +P+ 
Sbjct: 39  VTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVAVLTDAAGAELAAAAGVPLL 98

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VD    A+  LA A       +  +I +TG+ GKTTT  ++   L    +    IG+  
Sbjct: 99  VVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTTTSYLVEGGLRGAGRLPGVIGTVE 158

Query: 145 NHIG---------VP------LTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +G          P        LA M     D  + E+    L  +   T  V   +A+
Sbjct: 159 MRVGEERIKSERTTPEATELHAVLAVMREAGADAVVMEVSSHAL--VYGRTDGVVYDVAL 216

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
              + P HL     +E+   AKA +F +G  + G    N DDS+   L  ++      T 
Sbjct: 217 FNNLTPEHLDFHPDMEDYYRAKARLFQQGKSRRG--VANRDDSYGRRLAGEARI--PMTT 272

Query: 248 YSFGKSKNADFQ 259
           +S      AD++
Sbjct: 273 FSAAGDPAADWR 284


>gi|295693402|ref|YP_003602012.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus crispatus
           ST1]
 gi|295031508|emb|CBL50987.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           ST1]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 103/260 (39%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG   +  G  +  +R      F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIG---DGRGKGVANSR------FFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F    +  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G +   DFQ  + K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATQIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       ++   K L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVVAVAYTEKVPMEDIKKGLPSF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
 gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
          Length = 734

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 165/432 (38%), Gaps = 47/432 (10%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           + I P  A+FA         +  + A +KGA +++    +        IP   V ++  A
Sbjct: 323 QKIKPGCAYFAA------DKETAVTAFEKGAAVIITTQPIE------KIPNIVVANLDTA 370

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++ AV  +       +A+  S  K     M+   LSS  +T   I   NN+  +   + 
Sbjct: 371 LSRTAVFIKSALGMWTVAVMDSPEKINPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMF 430

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA----PAHLSNFSGIEEIASAK 210
                 +  +  +   + G +  ++      +A++T+      P  L+    IEE    K
Sbjct: 431 ASTPKTETAVINVSCVNGGNVERVSQTANFDVAILTSTVVSKNPRELTKPELIEE----K 486

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            ++  G+ ++G + +N DD          +  GI TI     +   D ++  +       
Sbjct: 487 LKVCGGMNESGAVIINIDD---------KNLAGIFTIPQDIITIGVDNRMADYF----AD 533

Query: 271 WMEVQLQGKSMEVVHHGIGYHM---------AQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +E+     S +++H    YH+             L T  +  I+       I A+  + 
Sbjct: 534 NIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATFALGEIMGIPPKQIIPAIEKYR 593

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  G         N+    +I +  N    S+ AA+  L  +    + RRIAVL ++ + 
Sbjct: 594 PSTG----LTTVRNERGIYVISDFENEAVESVGAALKELCTMQLPPDSRRIAVLSEVGDG 649

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSS 440
            E     +  +  +++  +++     G     L K A  +S  V    T   L  F++ +
Sbjct: 650 DEHELEIYRKVGNIVNKASVNITVCYGETAAELMKTADLKSKFVIKLNTRQALTEFLKLN 709

Query: 441 LVDGDVVVVKSS 452
           L D D V+ K S
Sbjct: 710 LRDNDAVLFKGS 721


>gi|145595727|ref|YP_001160024.1| UDP-N-acetylmuramate--alanine ligase [Salinispora tropica CNB-440]
 gi|189082497|sp|A4X9R5|MURC_SALTO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145305064|gb|ABP55646.1| UDP-N-acetylmuramate--L-alanine ligase [Salinispora tropica
           CNB-440]
          Length = 514

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 113/260 (43%), Gaps = 18/260 (6%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  M+T+ L  + +  ++  IG   + +G            D+ + E  
Sbjct: 123 VAVAGTHGKTTTTSMVTMVLQQAGVDPSF-VIGGEISEVGSGAHHGTG----DYFVVEAD 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   +  FL +  RP +++IT I   HL+ +  +  + +A A+     +  G I    D
Sbjct: 178 ES---DRSFLIY--RPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFIITCAD 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L     A G + +Y++G S +AD +L +    +       ++ G+S+      +
Sbjct: 233 DVGGRRLAETLRAEG-RRVYTYGISTDADLRLTEMASSTRGIRYLAEIDGRSLGEFRLPV 291

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G HM  N    +    +L   ++ A  AL+ F     R +R   A +     L+ + Y 
Sbjct: 292 PGRHMGLNSASAVLAEYLLDLPLEAAQSALAAFPGVRRRFERKGVADD----VLVYDEYA 347

Query: 348 ANPASMKAAISVLSQISPHG 367
            +P  +  A+  L +++  G
Sbjct: 348 YHPTPIALALRTLREVAGDG 367


>gi|157156086|ref|YP_001461258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli E24377A]
 gi|209917281|ref|YP_002291365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SE11]
 gi|218552671|ref|YP_002385584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI1]
 gi|300816126|ref|ZP_07096349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300923130|ref|ZP_07139190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|301330131|ref|ZP_07222800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|157078116|gb|ABV17824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E24377A]
 gi|209910540|dbj|BAG75614.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE11]
 gi|218359439|emb|CAQ96977.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI1]
 gi|300420585|gb|EFK03896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|300531333|gb|EFK52395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300843878|gb|EFK71638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|320200393|gb|EFW74979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EC4100B]
 gi|324017751|gb|EGB86970.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 117-3]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---AGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|313500439|gb|ADR61805.1| MurD [Pseudomonas putida BIRD-1]
          Length = 446

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIAI+GS  K+T   ++    +   K  A  G    ++G P  L  +  D++  + 
Sbjct: 105 AKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGG----NLGTP-ALDLLADDIELYVL 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 160 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +      +  ++FG +   DF+    ++   + ++  + Q
Sbjct: 213 NRQDALSRPLPVEG-----RPCWTFGLNP-PDFKAFGLREVDGEKYLAFEFQ 258


>gi|309809977|ref|ZP_07703825.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308169765|gb|EFO71810.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 460

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 27/264 (10%)

Query: 106 SKATIIAITGSVGKTT----TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           S A  + +TGS GKTT    T+ ++   L  +      +G    +IGVP++   +  +  
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKLGGHAYAVG----NIGVPISEVVLKANAN 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEK 219
           D  + E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K
Sbjct: 167 DLLVVEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDK 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +     N+D     +L+ +        +    +S  AD+ +       EQ ++E Q   +
Sbjct: 223 SDYFIANFDQK--NILEQELSITKANVVTFSEESTQADYYI------GEQ-YLESQADHE 273

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            M++    I G H  QN L+ + I  I+ A  +     LS F    G   R +  +    
Sbjct: 274 IMKISDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMTYNN 330

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
             + ++S + N  +   AI   SQ
Sbjct: 331 RRIYNDSKSTNIEAASVAIPSFSQ 354


>gi|227356426|ref|ZP_03840814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
 gi|227163536|gb|EEI48457.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
          Length = 436

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
            +KA I+AITGS GK+T    +T  +  + K          +IGVP LTL   P D+   
Sbjct: 102 EAKAPIVAITGSNGKST----VTTLVGEMAKADGIPVGVGGNIGVPALTLLTQPYDLY-- 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L     LT       A +  I+  H++ +  G+E+   AK  I++  +   T
Sbjct: 156 VLELSSFQLETTYSLTAAA----ATVLNISEDHMNRYPLGLEQYREAKLRIYDNAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              N DD     L  K          SFG  +  D+QL
Sbjct: 209 CVYNADDVLTLPLAGKD-----ARCVSFGIGQ-GDYQL 240


>gi|148257416|ref|YP_001242001.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|166222959|sp|A5EPK1|MURC_BRASB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146409589|gb|ABQ38095.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 467

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 133/340 (39%), Gaps = 50/340 (14%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T +      + +  +  IPV    ++L  L +L          + +AI G+ 
Sbjct: 66  GADVVVVSTAIKRDNPELMTARAQRIPVVRRAEMLAELMRLK---------SCVAIAGTH 116

Query: 118 GKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  M+   L +  I  T    G  N +     T AR+    D+ + E   S   + 
Sbjct: 117 GKTTTTSMVAALLDAGGIDPTVINGGIINAY----GTNARLGAG-DWMVVEADES---DG 168

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            FL   +   +A++T + P HL +F   + +  A     E +   G   +  D    + L
Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRAFVENVPFYGFAVMCIDHPVVQAL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288
             K   +  + I ++G +  AD +L      +  S  +V  + +     H          
Sbjct: 227 VGK---IEDRRIITYGVNPQADVRLVDLSPANGSSRFKVVFRDRKSGATHEISDITLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    + +   L    +   KA++ F    G  +R+         T+ID+ Y  
Sbjct: 284 GRHNASNATAAIAVAHELGISDEAIRKAIAGFG---GVKRRFTRTGEWNGVTIIDD-YGH 339

Query: 349 NPASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379
           +P  + A +          V++ + PH   R  ++  + C
Sbjct: 340 HPVEIAAVLKAARESTSGKVIAVVQPHRYTRLQSLFEEFC 379


>gi|320172821|gb|EFW48053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae CDC 74-1112]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|197285919|ref|YP_002151791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Proteus
           mirabilis HI4320]
 gi|194683406|emb|CAR44151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           HI4320]
          Length = 436

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
            +KA I+AITGS GK+T    +T  +  + K          +IGVP LTL   P D+   
Sbjct: 102 EAKAPIVAITGSNGKST----VTTLVGEMAKADGIPVGVGGNIGVPALTLLTQPYDLY-- 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L     LT       A +  I+  H++ +  G+E+   AK  I++  +   T
Sbjct: 156 VLELSSFQLETTYSLTAAA----ATVLNISEDHMNRYPLGLEQYREAKLRIYDNAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              N DD     L  K          SFG  +  D+QL
Sbjct: 209 CVYNADDVLTLPLAGKD-----ARCVSFGIGQ-GDYQL 240


>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|91209152|ref|YP_539138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UTI89]
 gi|110640301|ref|YP_668029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 536]
 gi|117622374|ref|YP_851287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|191174589|ref|ZP_03036083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218557028|ref|YP_002389941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli S88]
 gi|237704237|ref|ZP_04534718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|300984510|ref|ZP_07177002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|306815314|ref|ZP_07449463.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|331661134|ref|ZP_08362066.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
 gi|118595655|sp|Q0TLQ1|MURD_ECOL5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595656|sp|Q1RGA7|MURD_ECOUT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91070726|gb|ABE05607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           UTI89]
 gi|110341893|gb|ABG68130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           536]
 gi|115511498|gb|ABI99572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|190905136|gb|EDV64781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218363797|emb|CAR01457.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           S88]
 gi|222031919|emb|CAP74657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LF82]
 gi|226902149|gb|EEH88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|281177308|dbj|BAI53638.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE15]
 gi|294492798|gb|ADE91554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           IHE3034]
 gi|300306679|gb|EFJ61199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|305850976|gb|EFM51431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|307629662|gb|ADN73966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UM146]
 gi|312944694|gb|ADR25521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285166|gb|EFU44611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 110-3]
 gi|315300011|gb|EFU59249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 16-3]
 gi|323950916|gb|EGB46793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H252]
 gi|323955286|gb|EGB51059.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H263]
 gi|324012251|gb|EGB81470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 60-1]
 gi|331052176|gb|EGI24215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|152967145|ref|YP_001362929.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361662|gb|ABS04665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 533

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLT 127
           + D++       +PV+G          + +A R+R +   A  + +TG+ GKTT  EM  
Sbjct: 118 DADLLVGAARAGVPVWG---------DVELAWRMRPETGAAPWLTLTGTNGKTTVVEMT- 167

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRF-LTHLVRPH 185
              + I +      +   ++G PL  A R P   +    EL    L  +   +   VRP 
Sbjct: 168 ---AEILRAAGLRATSAGNVGTPLVEALRHPHGFEVLAVELSSYQLHWLSTDVESSVRPL 224

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            + +  +AP HL     +E  A AK  I++  E
Sbjct: 225 ASAVLNLAPDHLDWHGSMEAYALAKGRIYQNTE 257


>gi|309806265|ref|ZP_07700278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167249|gb|EFO69415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 27/264 (10%)

Query: 106 SKATIIAITGSVGKTT----TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           S A  + +TGS GKTT    T+ ++   L  +      +G    +IGVP++   +  +  
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKLGGHAYAVG----NIGVPISEVVLKANAN 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEK 219
           D  + E+    L  +    + ++P +A I  I    H+      E   +AK  I +  +K
Sbjct: 167 DLLVVEISSFQLMGV----NTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDK 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +     N+D     +L+ +        +    +S  AD+ +       EQ ++E Q   +
Sbjct: 223 SDYFIANFDQK--NILEQELSITKANVVTFSEESTQADYYI------GEQ-YLESQADHE 273

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            M++    I G H  QN L+ + I  I+ A  +     LS F    G   R +  +    
Sbjct: 274 IMKISDIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTF---TGAKHRLQYVMTYNN 330

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
             + ++S + N  +   AI   SQ
Sbjct: 331 RRIYNDSKSTNIEAASVAIPSFSQ 354


>gi|257092210|ref|YP_003165851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044734|gb|ACV33922.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L  +A +IAITGS GKTTT  ++     +  +  A  G    +IG     A M       
Sbjct: 108 LTPRARVIAITGSNGKTTTTALVGALCRAAGRRTAVAG----NIGPAALDALMSAIDGRS 163

Query: 164 IFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           + EL +  L   +   TH +    A +  +   HL  +  +++  ++KA IF+G    G 
Sbjct: 164 LPELWVLELSSFQLETTHSLAADAAALLNLCEDHLDRYLDMDDYTASKARIFQG---NGV 220

Query: 223 IFLNYDDS 230
           + LN DD+
Sbjct: 221 MVLNRDDA 228


>gi|229157491|ref|ZP_04285568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
 gi|228625941|gb|EEK82691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 25/260 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQGAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 166 TELSSFQLMGV----ELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +    +G+ +  V
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNAL--YFKGEKVVAV 270

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISNRKFY--- 327

Query: 343 DESYNANPASMKAAISVLSQ 362
           ++S   N  + + A+S  +Q
Sbjct: 328 NDSKATNMLATEKALSAFTQ 347


>gi|291616273|ref|YP_003519015.1| MurC [Pantoea ananatis LMG 20103]
 gi|291151303|gb|ADD75887.1| MurC [Pantoea ananatis LMG 20103]
 gi|327392725|dbj|BAK10147.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Pantoea ananatis
           AJ13355]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEGGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +AV+T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAVVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  +   +G + I ++G S +ADF++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDAVIRDLLPR---VG-RQITTYGFSDDADFRIEAFEQRGAQVHFSLIR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K+ +++  +  G H A N    + + S    +    + AL  F   +G G+R+
Sbjct: 277 QDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDSAILAALESF---QGTGRRF 328


>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|330895226|gb|EGH27564.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|302185268|ref|ZP_07261941.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae 642]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L      L  +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILP-----LVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
 gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
          Length = 528

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 151/416 (36%), Gaps = 44/416 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVF 86
           G+S+DS    P E F  + G    G  F   AV  GA  V+ + D   +    +   PV 
Sbjct: 49  GVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLTDADGAQIVHQTAPGTPVL 108

Query: 87  GVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              D   V+G L+        R   T  A+TG+ GKTTT   L   LS+        G+ 
Sbjct: 109 VHSDPRAVVGPLSAEVYHHPARGLVT-TAVTGTNGKTTTAYFLDAILSAHVGGCMVAGTV 167

Query: 144 NNHIG-----VPLTLARMP---------VDVDFGIFEL-GMSHLGEIRFLTHLVRPHIAV 188
              +G      P T    P         V+   G   L   SH   +  L  +V   +A 
Sbjct: 168 ELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGIVV-DVAG 226

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AKA++F   E      +  DD +   L A++  + I  + 
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKAQLFT-PEHARRGVVCVDDQWGAALAAEA-PIEIDRVR 284

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSI 305
           ++     AD+ +         S     L G   E +       G    QN    L +V  
Sbjct: 285 AYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQN--AALALVMA 342

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A V  A  A+++       G+  R +   G   L    +   P +M+ A+  +  I+P
Sbjct: 343 IRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPDAMELALKAVRPITP 402

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              GR I V G     G+  Q     L EV +             VL + D  PRS
Sbjct: 403 ---GRLIVVFG---SDGDRDQGKRPMLGEVCARLA---------DVLVVTDENPRS 443


>gi|256020074|ref|ZP_05433939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella sp.
           D9]
 gi|300821907|ref|ZP_07102051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|309796078|ref|ZP_07690490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331666325|ref|ZP_08367206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331680662|ref|ZP_08381321.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332281224|ref|ZP_08393637.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
 gi|300525507|gb|EFK46576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|308120320|gb|EFO57582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331066536|gb|EGI38413.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331072125|gb|EGI43461.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332103576|gb|EGJ06922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 449

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 109/251 (43%), Gaps = 24/251 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             I+ ITG+ GK+T   M+  IA  S  KT+  IG    ++G PL  +   ++  F ++ 
Sbjct: 108 GVIVGITGTNGKSTVTTMVGHIAKKSGLKTF--IGG---NLGTPLISS---INERFDVYV 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S      F       H++ I  IA  HL     + E A AK +I E    +  I   
Sbjct: 160 VEVSSFQLTWFGKKEKYFHLSSILNIAQDHLDYHRDMREYALAKLKIIELTSGSSIINSE 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             ++F +LL  K+     K I  F   K++ F       C +   M +     S++ ++ 
Sbjct: 220 ILENFGDLLVDKTK----KQIIPFSTRKDSFF-------CLKDGIMRLHKLSISLDSLNF 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N  +TLG+   L   V  A++ L  +   + R +  +C    G  T I++S 
Sbjct: 269 P-GIHNQENAAITLGLAQFLGIHVHDALEKLQDYAFLDHRMQ--KCGQING-VTFINDSK 324

Query: 347 NANPASMKAAI 357
             N  ++  A+
Sbjct: 325 ATNAHAVINAL 335


>gi|123441033|ref|YP_001005022.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166224749|sp|A1JJJ4|MURC_YERE8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122087994|emb|CAL10782.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 111/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + +  ++AL+ F   +G G+R+    N
Sbjct: 277 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIEDNDILRALAGF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A I 
Sbjct: 334 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIK 364


>gi|291530453|emb|CBK96038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum 70/3]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-ELG 168
           II ITG+ GK+TT  ++   +    K    IG    +IGVP    R     D  I  E+ 
Sbjct: 109 IIGITGTKGKSTTSSLIKFFIEKSGKDTMLIG----NIGVPPLERREEFTKDCVIVCEMS 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  ++       P +AV+  I P HL +++      +AK  IF    +  T+ +  +
Sbjct: 165 CHQLEYVK-----ASPDVAVLLNIYPEHLDHYTDFAAYRNAKLNIFRYQNENDTLIIGEE 219

Query: 229 DSFFELLKAK 238
              +   KA+
Sbjct: 220 VKQYADTKAR 229


>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
 gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD+   E +++ +      T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 241 DDAVTAEYMRSTA-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNML 297
            IG     N+L
Sbjct: 296 LIGKFNVYNVL 306


>gi|165872273|ref|ZP_02216910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227813178|ref|YP_002813187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. CDC 684]
 gi|254754377|ref|ZP_05206412.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Vollum]
 gi|254766036|sp|C3L713|MURD_BACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|164711949|gb|EDR17489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227002721|gb|ACP12464.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSKEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|150026094|ref|YP_001296920.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|189028989|sp|A6H194|MURC_FLAPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149772635|emb|CAL44118.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 47/299 (15%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIG----SYN-NHIGVPLTLARMPVDVDFGI 164
           +A+ G+ GKTTT  +L  I   S     A IG    +YN N IG   T+  +  D     
Sbjct: 114 LAVAGTHGKTTTSSILGHILYESGADVTAFIGGIVENYNSNLIGSGKTVTVVEADE---- 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F+    HL           P+IA +T++   HL  +     I ++  E  + +E    +F
Sbjct: 170 FDRSFLHL----------YPNIACVTSMDADHLDIYGDDAAIKASFKEFADKVEDKNKLF 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGKSME 282
           +              + L +K I + G + ++ F     +   E  W   +V+   ++++
Sbjct: 220 V-------------INGLPLKGI-TVGANDDSQFVAHNIR--IENGWYIFDVKTPTENIK 263

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  G+ G H   N L+ L +        ++  KAL+ F   +G  +R+   + +  F  
Sbjct: 264 DLKFGLPGKHNLTNALLALAMARTFGTPTESIAKALASF---KGVKRRFSFQIRKPKFVY 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ID+ Y  +P  + A    + ++ P+   + +AV      +   ++ F  D A+ LS ++
Sbjct: 321 IDD-YAHHPTEINAVHQAVRELYPN--EKVLAVF--QPHLFSRTKDFANDFAKSLSQFD 374


>gi|60389983|sp|Q6FFC2|MURD_ACIAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 172/462 (37%), Gaps = 85/462 (18%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG-----LVVVNTDMVASI 78
           QG+   ++ DSR   P             GHD I   VQ   G     L++   +++ S 
Sbjct: 28  QGYRVAVT-DSRETPP-------------GHDQIPQDVQTSFGQLDTELLLQAEEIILSP 73

Query: 79  G------------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           G            +  IPV G   VL          R  ++  I+AITGS  K+T   + 
Sbjct: 74  GLAPQLPEIQQAIAQGIPVIGDIQVL----------RRATQVPIVAITGSNAKSTVTTLF 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   K  A  G    ++G P  L  +  + +  + EL    L      +HL    +
Sbjct: 124 GQMAKDAGKRVAVGG----NLGRP-GLDLLKDEPELLVLELSSFQL---ETTSHL-NAEV 174

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHA 241
           AVI  ++  HL     +     AK  IF+G++K   +  N DDS    L       +S  
Sbjct: 175 AVILNMSEDHLDRHGDMLGYHQAKHRIFQGVKK---VVYNRDDSLTRPLVPDSTPMQSFG 231

Query: 242 LGIKTIYSFGKSKNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           L    I  +G  +  D  +   R   +  + S + +Q             G H   N L 
Sbjct: 232 LNAPDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQ-------------GTHNIANALA 278

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   +   V++ ++ L  F   E R +  +   +  ++   ++S   N  +  AAI 
Sbjct: 279 CLALGEAIGLPVESMLETLKQFKGLEHRCEYVKTVNDVRYY---NDSKGTNVGATLAAID 335

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L       +G+ I +LG   +     Q F + L + +  Y +    L G     ++ AL
Sbjct: 336 GLGAAIEPKQGKVIVILGGQGK----GQDFSL-LRQSVEKY-VKAAILIGEDAQQIEQAL 389

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +  + ++ T+       Q      DVV++  S +C  + +
Sbjct: 390 TETTQLVHASTLKDAVTQAQQYAQPEDVVLL--SPACASFDM 429


>gi|330888571|gb|EGH21232.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 30/299 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P + V+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVGVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +  +      +   ++G S++AD +    +Q    ++  V  + +  ++V  +
Sbjct: 229 DDPVVREILPQVK----RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G   L+
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVEGGNVMLV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           D+ Y  +P  + A IS +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 342 DD-YGHHPREVAAVISAVRGGWPD---RRLVMVSQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|229496580|ref|ZP_04390294.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316477|gb|EEN82396.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
          Length = 464

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 129/296 (43%), Gaps = 34/296 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIG--SYNNHIGVPLTLARMPVDVDFGIFE 166
           ++A+ G+ GKTTT  +L   L   + KT A +G  S N    + L      V V+   ++
Sbjct: 115 LLAVAGTHGKTTTSSLLAHLLHHSRVKTNAFLGGISANYQSNLLLDSVSPYVVVEADEYD 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-- 224
               HL           PHIA++T++ P HL  +   E      A+    ++  GT+   
Sbjct: 175 RSFLHL----------YPHIAIVTSMDPDHLDIYGTPEGYREGFAQFIRQVKPGGTLIYK 224

Query: 225 --LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +       E +K  ++A+G +T  S+  S N  F   + +   +  + E  ++ K++E
Sbjct: 225 KGITSTPETQEEVKCYTYAMG-ETADSY--SDNIHFD--EGRLFFDWHFPERGIEFKNLE 279

Query: 283 V-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           + V   I    A   L    ++ +   ++ +A+ +    H      +R+   L+     L
Sbjct: 280 LGVPITINVENATAALTAACLLGVSETELRSALASFRGIH------RRFERLLDTPNRVL 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ID+ Y  +P  ++A+I+ +  + PH +   I        +   +Q F+ + AEVLS
Sbjct: 334 IDD-YAHHPEELRASIASVRALYPHDKITGIF----QPHLYSRTQDFYPEFAEVLS 384


>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
 gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
          Length = 491

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 96/243 (39%), Gaps = 39/243 (16%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T A+M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNN 240

Query: 228 DDS 230
           DD+
Sbjct: 241 DDA 243


>gi|138894653|ref|YP_001125106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266166|gb|ABO66361.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 440

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VP 150
           L  + ++ +A R+ S+A  I ITGS GKTTT  ++   L +  +     G    +IG V 
Sbjct: 86  LPIVTEVELAYRI-SEAPFIGITGSNGKTTTTTLIYEMLKADGQDPLLAG----NIGLVA 140

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             +A+      + + EL    L  I       RP IAV+  I  AHL      E  A+AK
Sbjct: 141 CEVAKEAKPDQWLVTELSSFQLAGIDEF----RPRIAVLLNIFDAHLDYHGTKEAYAAAK 196

Query: 211 AEIFEGLEKTGTIFLNYDDSF 231
           A IF          +N DD  
Sbjct: 197 ANIFRNQTAHDYAVVNADDPL 217


>gi|94264633|ref|ZP_01288416.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93454928|gb|EAT05169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT--LARMPVDVDFGIFE 166
           +IA+TG+ GK+T   ++   L +   KT+        ++GVPL   LA  P + D+ + E
Sbjct: 121 VIAVTGTNGKSTVTTLIGELLQAAGYKTF-----VGGNLGVPLAQYLAG-PQEADWVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP I V+  I+P HL  +   +  A++K  +F     T    LN
Sbjct: 175 VSSFQLDT----AGAFRPQIGVLLNISPDHLDRYPDYQAYAASKWRLFAHQRATDWAVLN 230

Query: 227 YDD 229
             D
Sbjct: 231 GAD 233


>gi|82542692|ref|YP_406639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii Sb227]
 gi|193065871|ref|ZP_03046932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|193070830|ref|ZP_03051763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194429374|ref|ZP_03061899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218693557|ref|YP_002401224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 55989]
 gi|260842324|ref|YP_003220102.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|260853301|ref|YP_003227192.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|260866241|ref|YP_003232643.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|293476748|ref|ZP_06665156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|307311461|ref|ZP_07591103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|118595690|sp|Q326E7|MURD_SHIBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81244103|gb|ABB64811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella boydii
           Sb227]
 gi|192926458|gb|EDV81091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|192955860|gb|EDV86330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194412594|gb|EDX28891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218350289|emb|CAU95972.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           55989]
 gi|257751950|dbj|BAI23452.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|257757471|dbj|BAI28968.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|257762597|dbj|BAI34092.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|291321201|gb|EFE60643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|306908440|gb|EFN38938.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|315059311|gb|ADT73638.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           W]
 gi|323157845|gb|EFZ43948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EPECa14]
 gi|323160114|gb|EFZ46075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E128010]
 gi|323171251|gb|EFZ56899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LT-68]
 gi|323176396|gb|EFZ61988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1180]
 gi|323181785|gb|EFZ67198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1357]
 gi|323380131|gb|ADX52399.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           KO11]
 gi|323945717|gb|EGB41765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H120]
 gi|324118438|gb|EGC12332.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1167]
 gi|332098911|gb|EGJ03862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           3594-74]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 544

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           ++G++ DSR + P   FF + G   DGH F   AV +GA  +VV 
Sbjct: 58  ISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVE 102


>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf-5]
 gi|81174950|sp|Q4K6J1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf-5]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AI+GS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   +  
Sbjct: 162 ELSSFQLE----TTDQLGAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVF 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +         ++FG SK  DF+    ++   + ++  + Q
Sbjct: 215 NRQDALTRPLIGEGL-----PCWTFGLSK-PDFKAFGLREEDGEKYLAFEFQ 260


>gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium sp. BNC1]
 gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chelativorans sp. BNC1]
          Length = 483

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 40/393 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F D+L      S  I  +  ++G++ DSR +   + FFA++G   DG  +   A  +
Sbjct: 3   LGEFADILPL----SGSIAGETTISGLASDSRRVNAGDLFFALQGSKADGAAYAADAAGR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARL--RSKATIIAITGSVGKT 120
           GA  ++       ++G + +PV   DD     + LA+A ARL     AT++A+TG+ GKT
Sbjct: 59  GAVAIIARP---GTVGDVGVPVIEADD---PRHVLALASARLYGAQPATMVAVTGTSGKT 112

Query: 121 TTK-------EMLTIALSSIKKTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFEL 167
           +         E   +A +SI  T   +    +  G      P++L ++  ++ D G+   
Sbjct: 113 SVAAFTRQIWEKAGLAAASIGTT-GVVAPGRDEYGELTTPDPVSLHKLLRELADAGVTHA 171

Query: 168 GM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            M   SH  + R L   V+      T +   H+     +E    +K  +F+ L   G   
Sbjct: 172 SMEASSHGLDQRRLDG-VKLAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLPKGAPA 230

Query: 225 LNY-DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           + + DD + E  +  + A G++ + + G+ +     +++ +    +   E++ +G   ++
Sbjct: 231 VIFADDPWSEPTEKVALAAGLQ-LLTVGR-RGTFLTIKRVEHERHRQRTEIEHEGMIYDI 288

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G     N L+  G+        D A+ AL       GR          G    +D
Sbjct: 289 MLPLAGDFQVGNALVAAGLAISTGLPADKAVAALEHLKGASGR-LELTGTTEDGAQIYVD 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             Y   P +++   +VL  + P   GR I V G
Sbjct: 348 --YAHKPDALE---NVLQAVRPFTTGRVIVVFG 375


>gi|316933184|ref|YP_004108166.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
 gi|315600898|gb|ADU43433.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
          Length = 465

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A  +AITG+ GK+TT    T  ++ + +          +IG  +     P D    + E
Sbjct: 113 RAPFVAITGTNGKSTT----TALIAHLLREAGWDTQLGGNIGTAILSLEPPKDGRVHVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  + 
Sbjct: 169 MSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTAIVG 224

Query: 227 YDDSF 231
            DD F
Sbjct: 225 VDDEF 229


>gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
 gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
          Length = 337

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 21/117 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--------- 77
           +  I   S  +     F  I G   +GH+++  AV+ GA ++VV+   V           
Sbjct: 24  ITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQAVEHGAAVLVVDDRYVIESRSGPVILT 83

Query: 78  ----------IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
                     I   +I V  V D   AL+ L+ A       +  +I ITG+ GKTTT
Sbjct: 84  EHMKVNVYELIRDRNICVVAVRDTRKALSALSAAFFDHPAERMKMIGITGTNGKTTT 140


>gi|167750036|ref|ZP_02422163.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
 gi|167657057|gb|EDS01187.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-ELG 168
           II ITG+ GK+TT  ++   +    K    IG    +IGVP    R     D  I  E+ 
Sbjct: 109 IIGITGTKGKSTTSSLIKFFIEKSGKDTMLIG----NIGVPPLERREEFTKDCVIVCEMS 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  ++       P +AV+  I P HL +++      +AK  IF    +  T+ +  +
Sbjct: 165 CHQLEYVK-----ASPDVAVLLNIYPEHLDHYTDFAAYRNAKLNIFRYQNENDTLIIGEE 219

Query: 229 DSFFELLKAK 238
              +   KA+
Sbjct: 220 VKQYADTKAR 229


>gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Synechococcus sp. CC9311]
 gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
          6-diaminopimelate ligase; AltName:
          Full=Meso-A2pm-adding enzyme; AltName:
          Full=Meso-diaminopimelate-adding enzyme; AltName:
          Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
          ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase;
          AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Synechococcus sp. CC9311]
          Length = 503

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 17 HSIGI-VPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          HS+G+ VPQG     +  I+ DSR + P   F  + G   DG  F   A+  GA  V++ 
Sbjct: 10 HSVGLPVPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGASAVLIG 69

Query: 72 TDMVASI 78
          +   A++
Sbjct: 70 SAAAATL 76


>gi|110597720|ref|ZP_01386004.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
 gi|110340627|gb|EAT59107.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 154/400 (38%), Gaps = 55/400 (13%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLA--- 154
           V   L  K T I + G+ GKTTT  ++   L    +K  +  +G      G+P   +   
Sbjct: 97  VRQHLIEKNTSIVVAGTHGKTTTTSLVAWLLEHGGLKPGF-LVG------GIPENFSMGC 149

Query: 155 RMPVDVDFGIF-----ELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           R    ++ G F     E   +   +  +FL  L RP IA+I  I   H   FS +E+I  
Sbjct: 150 RPSGRIEAGFFVSEGDEYDTAFFDKRSKFL--LYRPDIAIINNIEFDHADIFSSLEDIKR 207

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           +       + + GT+ +N DD     + +K+       +  FG   +A++  R      E
Sbjct: 208 SFRLFVNLIPRNGTLIVNSDDPTAMEIASKAFC----RVERFGLKTDAEWSARNISVAHE 263

Query: 269 QSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGR 326
            S  ++  +G+    +     G +   N L             +   KA+ +F  PK   
Sbjct: 264 TSTFDLFYKGELQGSITVPLFGNYNIMNALAATAAAVTAGLPFEAIAKAMPLFLRPKR-- 321

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +        G  TLI E +  +P +++  +  ++++     GRR+    +         
Sbjct: 322 -RMEIIGTYPGNITLI-EDFAHHPTAIRVTLEAIAELY---SGRRVVTCFEPRSNTTTRN 376

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL-------ALKDALPRSIHVHYSETM--------- 430
            F  +L+E     +I  V +   H          L  +L R       +T+         
Sbjct: 377 IFQQELSECFGPASI--VVMGKVHRPDRYKPEECLNTSLLREELQKQGKTVFLSGEEPGA 434

Query: 431 --DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             D +  F++  + D DVVVV S+ + G   L N+L E F
Sbjct: 435 YPDNIVHFLKQQIRDDDVVVVLSNGNFG--NLKNMLKESF 472


>gi|229092960|ref|ZP_04224092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
 gi|228690414|gb|EEL44199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|225166182|ref|ZP_03727899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
 gi|224799576|gb|EEG18088.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVD 159
           A L  + +++AITG+ GKTT  E LT AL  I +     G+    IG PL+  +A     
Sbjct: 92  ASLFWRGSLVAITGTNGKTTLTEFLTHALRHIGRDVTATGN----IGSPLSHLVAERGGG 147

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               I    +S   +   L HL R   A+ T  A  HL     IEE   AK  +FE
Sbjct: 148 GPESIAVCEISSF-QAETLNHL-RADSAIWTNFAEDHLERHPTIEEYFHAKWRLFE 201


>gi|94266852|ref|ZP_01290512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93452482|gb|EAT03081.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT--LARMPVDVDFGIFE 166
           +IA+TG+ GK+T   ++   L +   KT+        ++GVPL   LA  P + D+ + E
Sbjct: 121 VIAVTGTNGKSTVTTLIGELLQAAGYKTF-----VGGNLGVPLAQYLA-GPQEADWVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP I V+  I+P HL  +   +  A++K  +F     T    LN
Sbjct: 175 VSSFQLDT----AGAFRPQIGVLLNISPDHLDRYPDYQAYAASKWRLFAHQRATDWAVLN 230

Query: 227 YDD 229
             D
Sbjct: 231 GAD 233


>gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|323970760|gb|EGB66014.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TA007]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPHASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA++ L     H +G    +LG              D + +    
Sbjct: 314 RWINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYL 360

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           N  +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 361 NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|85058428|ref|YP_454130.1| UDP-N-acetylmuramate--L-alanine ligase [Sodalis glossinidius str.
           'morsitans']
 gi|109892741|sp|Q2NVV0|MURC_SODGM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84778948|dbj|BAE73725.1| UDP-N-acetylmuramate-alanine ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 490

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M       +   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM-------VASIYAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A+IT I   H+  + G  E +          
Sbjct: 162 HARLGCSRYLIAEADESDASFLHL-QPMVAIITNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   +       
Sbjct: 221 LPFYGRAVMCIDDPVIRELLPR---VG-RQITTYGFSDDADLRITDYRQDGARGSFTFTR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K+ + V  +  G H A N +  + + +    + ++ ++A+  F   +G G+R+
Sbjct: 277 QEKADLRVELNAPGRHNALNAVAAIAVATEEGINDESILQAMLQF---QGTGRRF 328


>gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 481

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G    V   D 
Sbjct: 23  QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLSAITQGLVWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
 gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
          Length = 512

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 40/294 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFEL 167
           I +TG+ GKT+  + +  AL+++ +  A IG+     G+P  L  +P      D    + 
Sbjct: 113 IGVTGTNGKTSCTQWIAAALTALHQPCAVIGTLGT--GMPGQL--VPTGFTTPDASQLQR 168

Query: 168 GMSHLGE--IRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAE 212
            ++ L +   + +   V  H             IAV T +   HL      +   +AKA+
Sbjct: 169 SLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAK 228

Query: 213 IF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSK--NADFQLRKWKQCS 267
           +F   GL       +N DD+  + L  K  A  ++TI Y  G +   +AD +L      +
Sbjct: 229 LFAWRGLRAA---VINRDDAAGQRLLEK-LAGRVRTIAYGIGDASAPDADRELVALDVRA 284

Query: 268 EQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPK 323
             +    +L+      +V    +G     N+L  LG  S+L ADV  D A+  ++     
Sbjct: 285 TTTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLG--SLLAADVPFDAALAEIARLESV 342

Query: 324 EGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            GR +R    L N     +ID  Y   P +++  +  L  I+    GR + + G
Sbjct: 343 NGRMQRLGGRLQNDEPLVVID--YAHTPDALEKTLDALRPIATARGGRLVCMFG 394


>gi|15678559|ref|NP_275674.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3123061|sp|O26631|Y531_METTH RecName: Full=Uncharacterized protein MTH_531
 gi|2621605|gb|AAB85037.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 312

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLTLARMPVDVDFGIFE 166
           ++ + G+ GKTTT  M+   LSS  +T +     ++ +    V L +     D D  +FE
Sbjct: 117 MVGVAGTDGKTTTTNMIDHILSSRYRTVSFSSLQDSLVIEGLVELVVNGDIDDRDLAVFE 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L   H G IR    L      V+T + P H+  FS  +E       I + +   G + L 
Sbjct: 177 L--PH-GTIRMAEGL-ELSAGVVTNLTPDHMDEFSNYDEYIERNFSIKDLMAPGGVLALC 232

Query: 227 YDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            DD    S  + L+ ++       +Y  G+ +  +F  R++
Sbjct: 233 GDDPVISSLLDDLEVEN------VVYGVGERRTVEFMGRRF 267


>gi|238761557|ref|ZP_04622532.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
 gi|238700071|gb|EEP92813.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
          Length = 495

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 126 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 165

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 166 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 224

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 225 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 280

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + D  ++AL  F   +G G+R+    N
Sbjct: 281 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIEDDDILRALIGF---QGTGRRFDFLGN 337

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A + 
Sbjct: 338 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATVK 368


>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 457

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT------LARMPVDVDFGI 164
           I +TG+ GKTT   ML   L+S +   A  G    ++G+P +      +     + ++ +
Sbjct: 108 IGVTGTNGKTTVTHMLHHVLNSNQINTAMGG----NVGIPASQIALDSIRSSRTEPNWLV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      +  + P I + TT+ P HL     +E  +  K  +   LE +    
Sbjct: 164 MELSSYQLE----TSPNISPKIGIWTTLTPDHLERHGSLENYSDIKKRL---LENSSIRI 216

Query: 225 LNYDDSFFELLKAK 238
            N DD F +  ++K
Sbjct: 217 YNLDDHFLKNARSK 230


>gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 468

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS D+R +     F   KG  YDG  F+  A+ KGA  VV+   M+        P  
Sbjct: 15  LQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGA--VVLCDQMLPMQHVYYTP-- 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            V+ +  AL +L     L ++  +I ITG+ GKT+   +++
Sbjct: 71  HVERITQALLELYYGD-LCTRLHVIGITGTNGKTSVASIIS 110


>gi|237807298|ref|YP_002891738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
 gi|237499559|gb|ACQ92152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
            +KA ++AITGS GK+T   ++ + ++        IG    +IG P L L   P D    
Sbjct: 97  EAKAPVVAITGSNGKSTVTTLVGL-MAEQAGFKVGIGG---NIGTPALDLLLQPAD--LY 150

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  ++P  AVI  ++  HL  + G+    +AK  IF   +    I
Sbjct: 151 VLELSSFQLET----TSSLQPAAAVILNLSEDHLDRYDGMAGYLAAKQRIFANAKH---I 203

Query: 224 FLNYDDS 230
            +N DD+
Sbjct: 204 VVNRDDA 210


>gi|229826929|ref|ZP_04452998.1| hypothetical protein GCWU000182_02313 [Abiotrophia defectiva ATCC
           49176]
 gi|229788547|gb|EEP24661.1| hypothetical protein GCWU000182_02313 [Abiotrophia defectiva ATCC
           49176]
          Length = 58

 Score = 40.0 bits (92), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   LS    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L  +
Sbjct: 1   MIATVLSQKYNTLKTQGNFNNELGLPLTVFRLRQEHEIAVLEMGISDFGEMHRLAKI 57


>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7425]
 gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V T +   HL     +E+  SAKA +F     +G   +N DD + + L  +     +
Sbjct: 203 QVGVFTNLTQDHLDFHKDLEDYFSAKALLFSPGYLSGKAIINQDDPYGQRLIQQLEPAQV 262

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGI 302
            T YS   S  ADF  R     +  + +E  L     E+      +G     N+L  +G 
Sbjct: 263 WT-YSTSDS-TADFYTRDLNYLA--NGVEGILHTPEGEIAFTSPLVGQFNVANLLAAVGA 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  ++ T   AL  F    GR ++ + A +Q    ++D  Y   P S++   ++L  
Sbjct: 319 ALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDISVIVD--YAHTPDSLE---NMLRA 373

Query: 363 ISPHGEGRRIAVLG 376
             P  + R I V G
Sbjct: 374 ARPFVKHRMICVFG 387


>gi|30263914|ref|NP_846291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Ames]
 gi|47529344|ref|YP_020693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186762|ref|YP_030014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Sterne]
 gi|52141576|ref|YP_085253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus E33L]
 gi|167636572|ref|ZP_02394866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|167641133|ref|ZP_02399388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|170688845|ref|ZP_02880048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|170709237|ref|ZP_02899658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|177655544|ref|ZP_02936954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190565997|ref|ZP_03018916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218905043|ref|YP_002452877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228916550|ref|ZP_04080116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928961|ref|ZP_04091993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229604216|ref|YP_002868148.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
 gi|254721447|ref|ZP_05183236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. A1055]
 gi|254735953|ref|ZP_05193659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743848|ref|ZP_05201531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Kruger B]
 gi|254756744|ref|ZP_05208773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Australia 94]
 gi|60389927|sp|Q636B4|MURD_BACCZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390084|sp|Q81WC9|MURD_BACAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711879|sp|B7JK00|MURD_BACC0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766035|sp|C3P682|MURD_BACAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30258558|gb|AAP27777.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. Ames]
 gi|47504492|gb|AAT33168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180689|gb|AAT56065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. Sterne]
 gi|51975045|gb|AAU16595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           E33L]
 gi|167510913|gb|EDR86304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|167527995|gb|EDR90801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|170125844|gb|EDS94750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|170667200|gb|EDT17960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|172080073|gb|EDT65170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190562916|gb|EDV16882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218537488|gb|ACK89886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228830768|gb|EEM76373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843129|gb|EEM88211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268624|gb|ACQ50261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
 gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L +A R   K  +IAITG+ GK+TT  +  + L   KK +  +    N IG P +   +
Sbjct: 74  ELELAYRF-FKGKVIAITGTDGKSTTTRLTYLIL---KKFFDEVFEAGN-IGKPFSEVVL 128

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+  S  G+        RP+I    + +  HL     IE+   +K  IFE 
Sbjct: 129 ENPEGIAVLEVS-SFQGKT---LKTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRIFEN 184

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHA 241
             +T   FL  +D  +E+ K  S A
Sbjct: 185 --QTEEDFLILNDLVYEIKKTPSRA 207


>gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
 gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
          Length = 481

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR +     FF +KG ++   +F+  AV  G  L +   D       + IP   V+
Sbjct: 38  ISYDSREVDASTLFF-VKGDNFK-KEFLEKAVTAGLQLYISEMDF-----EVGIPALIVN 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           DV  A++ LA+      + K  ++A TG+ GKTT+
Sbjct: 91  DVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTS 125


>gi|227113985|ref|ZP_03827641.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD+    L  +   +G + I ++G S +AD ++  + Q   Q    ++ 
Sbjct: 221 LPFYGQAVMCIDDAVIRELLPR---VG-RHITTYGFSDDADVRISGYHQTGAQGHFTLER 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + K  + V  +  G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 277 KDKPLLTVTLNAPGRHNALNAAAAVAVATDEGIDDEAILRALERF---QGTGRRF 328


>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|38257960|sp|Q87WY3|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Pelobacter propionicus DSM 2379]
 gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Pelobacter propionicus DSM 2379]
          Length = 536

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
          LL A+  H +       +  ++ DSR I P   FFA++G   DGHDFI
Sbjct: 29 LLAALDSHDLHGDGAVEIKALTCDSRGIVPDSLFFALRGAAMDGHDFI 76


>gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           EA 2018]
          Length = 458

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 177/452 (39%), Gaps = 56/452 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV-------VVNTDMVASIG 79
           + G+S+   +    E  F + G   +G   I    + GA +        + N D+V  + 
Sbjct: 18  IGGVSMSGLAEILLERGFKVSGSDMNGSPMIDKLKEHGAEIYLGHNEKNINNVDIV--VY 75

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLT-IALS 131
           + +IP    + +    N +++  R       ++     IAI+G+ GKTTT  M++ IAL+
Sbjct: 76  TAAIPEDNPELIYARKNNISLMTRAEFLGSLMKGHKYNIAISGTHGKTTTTSMVSHIALT 135

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                   +G   + I   +   +     D+ I E        + F      P+I VI  
Sbjct: 136 EDVDPTILVGGNLDIINGNVLAGKS----DYFITEACEYKASFLEFY-----PYIGVILN 186

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL  +  I++I +  A+    + K G +  N DD    + +  S+A     + SFG
Sbjct: 187 IDADHLDYYKNIDDIENTFAKFVNLIPKEGYLIANADDK--RVARVASNATC--NVVSFG 242

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-GIVSILTADV 310
              N D + +     +E  +    +   S  + +  +      N+L  L  I S LT  +
Sbjct: 243 ID-NGDIRAKNI-SFNESGFSSFDVYKSSELLFNIKLNVPGKHNILNALSAIASALTLKI 300

Query: 311 D--TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362
              + I  L  F   +G  +R+     +   T+ID+ Y  +P  +KA +           
Sbjct: 301 SHKSIIDGLKSF---KGTHRRFEIKGVKNGITVIDD-YAHHPTEIKATLDAAKNYPHNKI 356

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                PH   R +++  D       S SF  +D   +  +Y            L L +A+
Sbjct: 357 YCVFQPHTYSRTLSLFDD------FSNSFSGVDELVLADIYAAREKDTGVVSSLKLSEAI 410

Query: 419 PRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ +      + + +  + +S L DGD+++ 
Sbjct: 411 NKNGVKSSNLHSFEDIVNYFKSKLNDGDILLT 442


>gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
 gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
          Length = 495

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 136/372 (36%), Gaps = 31/372 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V   ++DSR     + FFA+ G   DG  F   AV +G   VV   +        S
Sbjct: 32  PGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVLAVVAEAERPPWF-DPS 90

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +    V +   A+   A  A  +   TI A+TG+ GKT+         + +    A +G+
Sbjct: 91  VSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVAAFARQIWARLGHASASLGT 150

Query: 143 Y-----NNHIGVPLTLARMPVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187
                 +  +   LT    P+++   +  L   G++HL       G  ++    VR    
Sbjct: 151 LGVVTPSGAVYGSLTTPD-PIELQRTLHMLAKEGVTHLCLEASSHGLDQYRLDGVRLSAG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---TIFLNYDDSFFELLKAKSHALGI 244
             T ++  HL     +E    AK  +F  L   G    ++++  +       A  H L +
Sbjct: 210 GFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVDSTEGSHVAQVAADHELNV 269

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G    A   L           +EV+  G+   +    +G   A N L+  G+V 
Sbjct: 270 LGIGVAG----AGISLLARHDEGLGQLLEVEADGRRFTLRLPLVGAFQACNALVAAGLVL 325

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  A    A+ AL       GR +        G F      Y   P ++  A+  L    
Sbjct: 326 LTGAGAREALLALETLEGVPGRLELVGTKDGAGVFV----DYAHKPDALANALDAL---R 378

Query: 365 PHGEGRRIAVLG 376
           P+  GR I V G
Sbjct: 379 PYATGRLIVVFG 390


>gi|148980589|ref|ZP_01816136.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
 gi|145961172|gb|EDK26488.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 38/261 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             +  DD    EL+   S     + + ++G S++AD ++  + Q  +Q    V  +GK+ 
Sbjct: 230 AVMCVDDPVVRELIPQVS-----RQVITYGFSEDADIRIENYVQEGQQGKFTVVREGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           +++  +  G H   N L     +++ T D  +    L      EG G+R+          
Sbjct: 285 LDITLNIPGRH---NALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLGEYETGN 341

Query: 337 GFFTLIDESYNANPASMKAAI 357
           G   L+D+ Y  +P  +   I
Sbjct: 342 GVAMLVDD-YGHHPTEVDVTI 361


>gi|75908537|ref|YP_322833.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
 gi|109892691|sp|Q3MAP8|MURC_ANAVT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75702262|gb|ABA21938.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
          Length = 494

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 157/397 (39%), Gaps = 53/397 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N +  A+I  L  P+    DVL AL          +    +A+ G+ GKTTT  M+   L
Sbjct: 106 NLEYQAAI-ELGCPILHRSDVLAAL---------INDYHSVAVAGTHGKTTTSSMIGYML 155

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             + +  T    G  N   G    L + P       + +  +   +   + H   P I +
Sbjct: 156 LEAGLDPTIIVGGEVNAWEG-NARLGQSP-------YLVAEADESDGSLVKHA--PEIGI 205

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHALGIKT 246
           IT I   H  ++  +EE+     +IF+   K     +   D  +  ELL+  +      T
Sbjct: 206 ITNIELDHPDHYDTLEEV----VDIFQTFAKGCKTLIGSVDCATVRELLRTAASDRQQPT 261

Query: 247 I-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVS 304
           I YS  +   AD+ +      ++ +   V  +GK++ V+    +  H   N L  + +  
Sbjct: 262 ITYSLHQDTEADYTVTNIDCRADGTTALVWEKGKALGVLKLKLLSRHNLSNALAAVAVGR 321

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------ 358
           ++  +     K ++ F   EG  +R+         T ID+ Y  +P+ ++A ++      
Sbjct: 322 LVGLEFGEIAKGIAGF---EGARRRFEFRGEVDGITFIDD-YAHHPSEIRATLAAARLQA 377

Query: 359 -----VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVL 412
                V++   PH   R +  L       E S+SF H DL  +  +Y+     L      
Sbjct: 378 RPGQRVVAIFQPHRYSRTLTFL------EEFSESFSHADLVVLTDIYSAGEPNLGLISGE 431

Query: 413 ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            L + + +    V Y  T+  +  ++  +L  GD+ +
Sbjct: 432 QLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLAL 468


>gi|39936594|ref|NP_948870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris CGA009]
 gi|62900683|sp|Q6N409|MURD_RHOPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39650450|emb|CAE28973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rhodopseudomonas
           palustris CGA009]
          Length = 469

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A  +AITG+ GK+TT    T  ++ + +          +IG  +     P D    + E
Sbjct: 113 RAPFVAITGTNGKSTT----TALIAHLLREAGWDTQLGGNIGTAILSLEPPKDGRVHVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  + 
Sbjct: 169 MSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTSIIG 224

Query: 227 YDDSF 231
            DD F
Sbjct: 225 VDDEF 229


>gi|17232557|ref|NP_489105.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc sp. PCC 7120]
 gi|25008804|sp|Q8YM75|MURC_ANASP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17134203|dbj|BAB76764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 494

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 159/407 (39%), Gaps = 73/407 (17%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N +  A+I  L  P+    DVL AL          +    +A+ G+ GKTTT  M+   L
Sbjct: 106 NLEYQAAI-ELGCPILHRSDVLAAL---------INDYHSVAVAGTHGKTTTSSMIGYML 155

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--------H 180
             + +  T    G  N                    +E G + LG+  +L          
Sbjct: 156 LEAGLDPTIIVGGEVN-------------------AWE-GNARLGQSSYLVAEADESDGS 195

Query: 181 LVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLK 236
           LV+  P I +IT I   H  ++  +EE+     +IF+   K     +   D  +  ELL+
Sbjct: 196 LVKHAPEIGIITNIELDHPDHYDTLEEV----VDIFQTFAKGCKTLIGSVDCETVRELLR 251

Query: 237 AKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
             S      TI YS  +   AD+ +      ++ +   V  +GK++ V+    +  H   
Sbjct: 252 NASGDRQQPTITYSLHQDTEADYTVTNIDYRADGTTALVWEKGKALGVLKLKLLSRHNLS 311

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +  ++  +     K ++ F   EG  +R+         T ID+ Y  +P+ ++
Sbjct: 312 NALAAVAVGRLVGLEFGEIAKGIAGF---EGARRRFEFRGEVDGITFIDD-YAHHPSEIR 367

Query: 355 AAIS-----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNIS 402
           A ++           V++   PH   R +  L       E S+SF H DL  +  +Y+  
Sbjct: 368 ATLAAARLQARPGQRVVAIFQPHRYSRTLTFL------EEFSESFSHADLVVLTDIYSAG 421

Query: 403 HVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
              L       L + + +    V Y  T+  +  ++  +L  GD+ +
Sbjct: 422 EPNLGLISGENLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLAL 468


>gi|315181129|gb|ADT88043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 148/378 (39%), Gaps = 67/378 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P   ++T I   H+  + G  E +     +    L   G 
Sbjct: 175 ---IAEADESDASFL-HL-QPMATIVTNIEADHMDTYGGDFETLKQTFVDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  QG++ 
Sbjct: 230 AILCVDDPVVRELIPRIS-----RHVITYGFSEDADVRIENYRQEGQQGKFTVVRQGRAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336
           +++  +  G H A N    + + +      D  ++A++     +G G+R+          
Sbjct: 285 LDITLNIPGRHNALNASAAIAVATEDDIHDDVILRAMA---NTQGTGRRFDHLGEFDTGN 341

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G   L+D+ Y  +P  +   I+                PH   R   +  D   + E   
Sbjct: 342 GDVMLVDD-YGHHPTEVGVTIAAARNGWADKRLVMIFQPHRYTRTRDLYDDFANVLE--- 397

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQ 438
              +D+  +L +Y+     ++G    A   +L R+I       +D +F+         + 
Sbjct: 398 --QVDVLLMLDVYSAGEKPIAG----ADGRSLCRTIRSRGK--LDPIFVPDSKTLPSVLA 449

Query: 439 SSLVDGDVVVVKSSNSCG 456
           + L DGD+V+ + +   G
Sbjct: 450 NVLQDGDLVLTQGAGDIG 467


>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS155]
 gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS155]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 39/262 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITGS GK+T    +T  +  + +      +   +IGVP  L  +  + D  + E
Sbjct: 108 KPCVIGITGSNGKST----VTTLVGEMAREAGIAVAVGGNIGVP-ALDLLHENADLFVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A    I+  H+  +S I     AK  ++   +++  +  N
Sbjct: 163 LSSFQL----ETTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFN 215

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
            DD      E +   S  L       +G S +     + +   SE     EV L      
Sbjct: 216 RDDKLTVPPEPMNQNSFGLAAPETDEWGISDS-----KIYHGSSEIMPITEVSL------ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT 340
                IG H   N+L  + +V ++  D     K    F      G  +RC +   +   T
Sbjct: 265 -----IGSHNHANLLAAMALVDVVGVDKQVMAKVARSF-----TGLSHRCEVVGIKNGVT 314

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            +++S   N  +  AA+  LS 
Sbjct: 315 YVNDSKATNVGATVAALDGLSD 336


>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|126729249|ref|ZP_01745063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
 gi|126710239|gb|EBA09291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
          Length = 466

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      ++A+TGS GK+TT  ++   L++  ++    G    +IG  +     P D   
Sbjct: 114 RFERPPRVVAVTGSNGKSTTSALIHHILTASVRSSQLAG----NIGRGVLDIDPPEDGGV 169

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            + EL        R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 170 VVLELSSYQTELARALT----PDVAVFTNLSPDHLDRHGGLGGYFAAKRRLF 217


>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
          Length = 465

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAITGS GK+TT  ++   L+ + +     G    +IG  +      +D +  + EL  
Sbjct: 122 VIAITGSNGKSTTSALMHHILTRVGRPSQLAG----NIGRGVLDIDPAIDGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 178 YQTDLARSLT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218


>gi|167035505|ref|YP_001670736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida GB-1]
 gi|166861993|gb|ABZ00401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           GB-1]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A IIAI+GS  K+T   ++    +   K  A  G    ++G P  L  +  DV+  + 
Sbjct: 109 ATAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGG----NLGTP-ALDLLADDVELYVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G ++   + +
Sbjct: 164 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQ---VVV 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +      +  ++FG ++  DF+    ++   + ++  + Q
Sbjct: 217 NRQDALSRPLPVEG-----RPCWTFGLNQ-PDFKAFGLREVDGEKYLAFEFQ 262


>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
 gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 146/357 (40%), Gaps = 52/357 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           + A I+AITGS GK+T    +T  +  + K          +IGVP LTL +   +    +
Sbjct: 103 NPAPIVAITGSNGKST----VTTLVGEMAKAAGWQVGVGGNIGVPALTLLKQ--ENQLVV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E  +     
Sbjct: 157 LELSSFQLET----TTSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAK---VC 209

Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQG 278
            +N DD+    +  A S  +      SFG     D+ L K +    + W+ VQ    L  
Sbjct: 210 VVNADDALTMPVRGADSRCI------SFGVDV-GDYHLNKQQG---EIWLRVQGEKVLNT 259

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + M++     G H   N L  L +   +     +++KAL+ F    G   R++       
Sbjct: 260 REMKLT----GRHNYTNALAALALADAVGIPRSSSLKALTTF---TGLPHRFQLVFEHNG 312

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S +AA+  L Q+    +G    +LG   +  + S        + + +
Sbjct: 313 VRWINDSKATNVGSTEAALEGL-QV----DGTLHLLLGGDGKSADFSGLTRFLQGDQIKV 367

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           Y        G  + AL+  +        +ETM+   + +  +L  GD+V++  S +C
Sbjct: 368 YCFGR---DGEELAALRPEVS-----QLTETMEQAMVLLSKNLAPGDMVLL--SPAC 414


>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 43/290 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GK+T   + T+     K +   +G   N IG+P  L+ +  + D  + EL  
Sbjct: 108 IIAITGSNGKST---VTTLVYEMAKASGLKVGMGGN-IGIP-ALSLLEQNYDLYVLELSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+   +   T  +N +D
Sbjct: 163 FQLET----TYSLKATSATVLNVTEDHMDRYIDLEDYRQAKLRIYHNAK---TAIVNTED 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEVVHH 286
               +         +K+  SFG+ +N+D+ L+   +  +Q +M   E+ L    +++V  
Sbjct: 216 PLTTI-------DSLKSAVSFGE-ENSDYWLK--TENGKQYFMAKNEMILPCDEIKLV-- 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L  + +       ++    AL  F    G   R++ A        I++S 
Sbjct: 264 --GRHNYMNVLAAIALAQAANVSLEGIRTALREF---SGLDHRFQLAHFANGVYWINDSK 318

Query: 347 NANPASMKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHI 390
             N  S  AA++ L Q++ H      G+G+      D  E+  L Q  HI
Sbjct: 319 ATNVGSTVAALTGL-QVAGHLHLLLGGDGKE----ADFSELSTLIQQPHI 363


>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766048|sp|B8FBS0|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 11/119 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIF 165
           +A IIA+TG+ GKTT   ++   + +     A +G    +IG PL   A+        + 
Sbjct: 107 QAPIIAVTGTNGKTTVTSLIGEMMEA-SGISAFVG---GNIGNPLVNYAKGEDKAQVVVA 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        P +A++T +   H+  + G+E  A++KA +F  + +TG  F
Sbjct: 163 EISSFQLDTIESFA----PKVALLTNVTEDHMDRYDGMEGYAASKARVF--MNQTGADF 215


>gi|313888463|ref|ZP_07822130.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845492|gb|EFR32886.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PHIAV+T +   HL      +    AK +IF+  ++     LNY+D   + L  K +  
Sbjct: 166 KPHIAVLTYVTSDHLDWHKTKQNYVDAKFKIFKNQDENDFAILNYED---KELAEKYNLK 222

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             K  +S  K+      L + K   ++    E  L  K +++     G H  +N++  + 
Sbjct: 223 AEKYYFSMEKTSEKGAYLDQGKIYFTDGDKTEEILDVKDIKIP----GDHNIRNIMAAVI 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  D+D   K++  F   E R +  R      ++   ++S   NP S + A++ + 
Sbjct: 279 ACKLLKIDLDVIKKSIVSFTGVEHRIEFVREVDGVKYY---NDSKGTNPDSTEVAVAAMD 335


>gi|237799292|ref|ZP_04587753.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022148|gb|EGI02205.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 32/300 (10%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    E+L         +   ++G S++AD +    +Q    ++  V  + +  ++V  
Sbjct: 229 DDPVVREILPMVK-----RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341
           +  G H   N L T+ I +      +  ++ LS F   +G G+R++      ++ G   L
Sbjct: 284 NMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVDGGNVML 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  + A I+ +    P    RR+ ++         ++  + D  +VL+  N+
Sbjct: 341 VDD-YGHHPREVAAVINAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLADANV 395


>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
 gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 137/347 (39%), Gaps = 47/347 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-----KATIIAITGSVGKTTTKEM 125
           NTD++  + S  IP F        + K+ V   +         ++IA+TG+ GK+TT ++
Sbjct: 40  NTDLI--VVSPGIPFFHRIYKEARIRKIPVVGEIEFSYRFFDGSVIAVTGTDGKSTTSKL 97

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   +   K      G+Y       ++  +  V ++   F++         + T + RP 
Sbjct: 98  IHHIIGEEKADIG--GNYGTPFSDIVSEGKDTVVLELSSFQI---------YSTEMFRPD 146

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV     P HL     +     +K  +F  +++     LN+DD        K       
Sbjct: 147 IAVFLNFYPDHLDWHKKLLHYRLSKYRLFRNMKEEDPAVLNFDDQVVRNTPKKGKR---- 202

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
             Y F  S   D     +   SE   + +++ G   +     I   G H  QN++ ++  
Sbjct: 203 --YYFSLSPLPDNLEGAYYDGSE---IVLKINGFKFKFGLSDIHLKGIHNIQNIMASVVT 257

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I   D +T  + L  F P   R   Y  ++N   F      YN + A+   A+    Q
Sbjct: 258 AYIYGIDPETIEERLKSFKPLPHR-MEYVGSINGVDF------YNDSKATTVQAVKKAVQ 310

Query: 363 ISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                +G+R I + G + + G+ S     DL + L L ++  V++ G
Sbjct: 311 ---SFDGKRVILITGGINKGGDFS-----DLRDEL-LNSVKEVFIIG 348


>gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
 gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
          Length = 811

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 28/273 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGV 149
           L  +++  + A L  + T I ++GS GKTT   ++T    + KK  +YA IG  N+    
Sbjct: 88  LPLVHRAELLALLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYA-IGGLNSQY-- 144

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIAS 208
              L       ++ I E   S       L H   P +AV+T +   HLSNF G  E++A 
Sbjct: 145 ---LNGYSGSSEYFIAEADESDGS----LKHYF-PKVAVVTNLDNEHLSNFEGSKEKLAQ 196

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
              E    ++     F N D       + K    GI    S+G S+     +   +Q   
Sbjct: 197 TIEEFTRKVDDPNLCFYNGD-----CQELKGRISGI----SYGFSQECALYIYSHRQEGW 247

Query: 269 QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +S   +   GK  +++  + IG H   N    +G+      D ++  +AL  F   + R 
Sbjct: 248 RSVFSLSFLGKDYLDIDLNLIGKHNVANAAAAIGVALTFGIDEESIREALKSFSGVQRRM 307

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           +R   +  + F  L  E Y  +P+ +   +  L
Sbjct: 308 ERKNTS--EKFLFL--EDYAHHPSEISCTLRAL 336


>gi|298507099|gb|ADI85822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens KN400]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 146 HIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG PL  L      VD  + E+    L  IR      RP +AV+  I   HL  ++  +
Sbjct: 142 NIGNPLIELVTTGAAVDRVVVEISSFQLEWIRSF----RPTVAVLLNITEDHLDRYATYQ 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           E   AKA IFE    +    LN DD     L  ++ A
Sbjct: 198 EYIDAKARIFENQTASDWAVLNVDDPIVAGLTGRTRA 234


>gi|192292416|ref|YP_001993021.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286165|gb|ACF02546.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris TIE-1]
          Length = 469

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A  +AITG+ GK+TT    T  ++ + +          +IG  +     P D    + E
Sbjct: 113 RAPFVAITGTNGKSTT----TALIAHLLREAGWDTQLGGNIGTAILSLEPPKDGRVHVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  + 
Sbjct: 169 MSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTSIIG 224

Query: 227 YDDSF 231
            DD F
Sbjct: 225 VDDEF 229


>gi|254495666|ref|ZP_05108586.1| cyanophycin synthetase [Legionella drancourtii LLAP12]
 gi|254355117|gb|EET13732.1| cyanophycin synthetase [Legionella drancourtii LLAP12]
          Length = 855

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 22/158 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIGSY 143
           + +L  L    VAAR+     I+A+TG+ GKTT   +++     +  ++   T   I   
Sbjct: 443 EPILNMLYPFGVAARI----PIVAVTGTNGKTTVVRLISHLARQVNYTTGTTTTEGIYIN 498

Query: 144 NNHI--------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           NN I        G    +   P +VDF + E      G +R         I++IT I   
Sbjct: 499 NNMICRGDCSGPGSAEVVLHAP-EVDFAVLECARG--GILRSGLGFDECDISIITNITVD 555

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           HL   +   +EE+A  KA +    +KTG   LN DD+ 
Sbjct: 556 HLGLGDIHTLEEMAEVKAVVARSTKKTGYAILNADDNL 593


>gi|83592288|ref|YP_426040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum rubrum ATCC 11170]
 gi|118595685|sp|Q2RVU2|MURD_RHORT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83575202|gb|ABC21753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 477

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
           AR R     + ITG+ GK+TT  ++   L + +      G+    +G P L+   +P   
Sbjct: 112 ARARQDCFFLGITGTNGKSTTTALIGHILKAARHPVQVGGN----LGTPALSFEPLPFHG 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + EL    L  +  L       +AV+  I P HL+   G++   +AK +IF    + 
Sbjct: 168 TY-VLELSSYQLELVPSLCC----DVAVLLNITPDHLARHGGMDGYIAAKRQIFRCGPRP 222

Query: 221 GTIFLNYDD 229
           G   +  DD
Sbjct: 223 GVAVVCIDD 231


>gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Synechococcus sp. CB0205]
          Length = 503

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 7  FHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           H LL+ +    + + P    G V G+S DSR + P   F  + G   DG  F   A+Q 
Sbjct: 5  LHSLLREV---GLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQL 61

Query: 64 GAGLVVVN 71
          GA L V+ 
Sbjct: 62 GAALAVIG 69


>gi|313205089|ref|YP_004043746.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444405|gb|ADQ80761.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 486

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q+ + +Q       +  + +G H  +N L  L +V  L    DTA +AL+ +   EG  +
Sbjct: 283 QNGLHIQFSINGTTIKMNTVGAHNMENALAALAVVHRLGVSFDTAAEALTQY---EGIYR 339

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           R++    +    LID+ Y  NPA   A+I+    ++P
Sbjct: 340 RHQIIGEKHGVLLIDD-YAHNPAKCAASIAACQPVAP 375


>gi|253988595|ref|YP_003039951.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780045|emb|CAQ83206.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica]
          Length = 492

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 40/196 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 123 IAIAGTHGKTTTTAM----ISSI---YAQAGL-------------DPTFVNGGLVKAAGT 162

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +AV+T I   H+  + G  E++          
Sbjct: 163 HARLGSSRYLIAEADESDASFLHL-QPMVAVVTNIEADHMDTYHGDFEKLKQTFINFLHN 221

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD   + L  +   +G + I ++G S+ AD ++  ++Q   Q +  V  
Sbjct: 222 LPFYGRAVMCIDDPVVKELIPR---VG-RYITTYGFSEEADVRITHYEQKGAQGYFTVSR 277

Query: 277 QGK-SMEVVHHGIGYH 291
           Q    ++VV +  G H
Sbjct: 278 QDMVDLKVVLNAPGRH 293


>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
          Length = 502

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 116/284 (40%), Gaps = 33/284 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++++ I    I       V G++ DSR +    AF  I G   +GH +I   
Sbjct: 1   MGEAMKISNIIEKINASVISGSCDADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYIQDV 60

Query: 61  VQKGAGLVVVNT--DMVASIGSLSIP----VFGVDDVLGALNKLAVA--ARLRSKATIIA 112
           + +GAGL+VV++  D +       IP    V   DD   A   ++ A       K   I 
Sbjct: 61  IGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLFTIG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP 157
           ITG+ GKTTT  M+   L S       IG+    IG               +  + A+M 
Sbjct: 121 ITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFAKM- 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
           V+       + +S  G +   T  ++ +I V T I P H+  +  S  E+  S KA++F 
Sbjct: 180 VEAGCEAVVMEVSSQGLMLNRTAGIQFNIGVFTNIEPDHIGPNEHSSFEDYLSCKAKLF- 238

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +     +N DD   + + A +       +  +G S+ AD +
Sbjct: 239 --RQCDIGIVNADDEHVDRILANATC----RVEKYGFSETADIR 276


>gi|30061655|ref|NP_835826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 2457T]
 gi|30039897|gb|AAP15631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
 gi|313646529|gb|EFS10990.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 97/457 (21%), Positives = 178/457 (38%), Gaps = 67/457 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P  L  +  + +  + EL    L     L  
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVLELSSFQLETTSSLQA 172

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 173 VA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D  L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDCHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+ L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALVALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L     H +G    +LG              D + ++   N  +V L  F     +
Sbjct: 330 ALNGL-----HVDGTLHLLLG--------GDGKSADFSPLVRYLNGDNVRLYCFGRDGAQ 376

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            A  R      +ETM+     +   +  GD+V++  +
Sbjct: 377 LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPA 413


>gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
 gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
          Length = 515

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88
           D+RS+   + F A      D    + +A+ +GA  V+V  +  A I +L    ++ V G+
Sbjct: 34  DTRSLRAGDVFLAYAVDGADNRPHLANALSRGAAAVLVQPEGYAGIDALDPAVALAVPGL 93

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D + G +              +I +TG+ GKT+  + +  AL+++++  A IG+  +  G
Sbjct: 94  DALAGEIAS-GWYGDPSDAMFVIGVTGTNGKTSCTQWIATALTALRRPCAVIGTLGS--G 150

Query: 149 VPLTL 153
           +P  L
Sbjct: 151 MPGRL 155


>gi|229013097|ref|ZP_04170262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
 gi|229168653|ref|ZP_04296375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228614809|gb|EEK71912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228748351|gb|EEL98211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 31/263 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A++  + +  +
Sbjct: 110 SAAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQLAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEADYSI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSM 281
           +N DD+  +++   +++ G K ++S              K+  + ++++   +  +G+ +
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFS------------TTKEIEDGAYIKDNALYFKGEKV 267

Query: 282 EVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V   +  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VKVSDIVLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
              ++S   N  + + A+S  +Q
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ 347


>gi|299144101|ref|ZP_07037181.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518586|gb|EFI42325.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 465

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 164/429 (38%), Gaps = 61/429 (14%)

Query: 63  KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +G  LVV        N ++ A+I  L I +      LGAL        +++  T IAI+G
Sbjct: 73  RGVDLVVYTDAINIENEELKAAI-KLKIDIIDRASFLGAL--------MKNYDTSIAISG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GKTTT  M+T  + ++          N  I +   L  +  +V  G  +L ++   E 
Sbjct: 124 THGKTTTTSMVTEIIKNLNS--------NPTILLGGQLDDINGNVKIGDKKLFLTEACEY 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +       P  AV+  I   HL  F  IE I          L     + LN DD   ++L
Sbjct: 176 KANVLKYFPTTAVVLNIDEDHLDYFDNIEHIIKTFKGFVNNLNSNDKLILNLDDENSKML 235

Query: 236 ----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
               K        K+  ++  +KN  + L  +    +  + E  +    + +    +G H
Sbjct: 236 LNDKKENVITFSTKSPANYN-AKNITYSLDGYPSY-DLYYNEKFIGNVELSI----MGNH 289

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFTLIDESYNAN 349
              N L  +            AI  + ++   +G  +R  Y+   N     +I++ Y  +
Sbjct: 290 NVSNSLAAIAASVENGVSFKDAINGIKIY---KGVHRRLEYKGKYNDA---IIEDDYAHH 343

Query: 350 PASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLY 399
           P  +KA+++ L             PH   R   +L         S+SF + D+  +  +Y
Sbjct: 344 PTEIKASLNALKNSCKGSLYCIFQPHTFTRTKLLL------DSFSKSFNNADVVIITDIY 397

Query: 400 NISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                     H   L DA+  +  +  Y +    +  +++ +L + D+ V   +     Y
Sbjct: 398 AAREKDYGDIHSKTLCDAINSNGGNAFYLKNFSDVCEYLKKNLKENDMAVTMGAGDV--Y 455

Query: 459 RLINLLLEE 467
           ++   LLE+
Sbjct: 456 KIGEALLED 464


>gi|229198024|ref|ZP_04324738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
 gi|228585503|gb|EEK43607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 29/262 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K       ++           +  L  K  +VV
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKEIEDGACIK-----------DNALYFKGEKVV 268

Query: 285 HHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             G     G H  +N+L  + I  +L    +     L  F   + R +      N+ F+ 
Sbjct: 269 EVGDIVLPGQHNLENILAAMSISKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY- 327

Query: 341 LIDESYNANPASMKAAISVLSQ 362
             ++S   N  + + A+S  +Q
Sbjct: 328 --NDSKATNMLATEKALSAFTQ 347


>gi|157363503|ref|YP_001470270.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
 gi|189082509|sp|A8F4X2|MURC_THELT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157314107|gb|ABV33206.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
          Length = 445

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 65/284 (22%)

Query: 104 LRSKATIIAITGSVGKTTTKEML-----------TIALSSIKKTYACIGSYNNHIGVPLT 152
           L +  T  A+TGS GKTTT  ML           T+ L  I ++    G+Y    G P  
Sbjct: 97  LNNGKTQFAVTGSDGKTTTTAMLAHCLKVLGEDPTVFLGGIHRSLE-FGNYRPGKG-PY- 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                      ++EL  S     RF      P   +IT     HL N+SG  ++      
Sbjct: 154 -----------VYELDESQPEFSRF-----SPDYMIITNARGDHLENYSGDRQLYRDCFR 197

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
                 +   +  + D++  +L             ++FGKS N+  +L    +     + 
Sbjct: 198 SVVMSTRKSVVTFSEDENTSDL-----------GTWTFGKSINSTCRLIDRNRNGLFQFA 246

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---DVDTAIKALSVFHPKEGRGKR 329
           ++++ GK   +     G H   N+L  + ++++L +   +V+  +KAL  F    G  +R
Sbjct: 247 KIEINGKEYNLTLKVPGEH---NILNAMAVITLLWSAGHEVEEVLKALEDF---TGTYRR 300

Query: 330 YRCALNQGFFTLIDE--------SYNANPASMKAAISVLSQISP 365
           +         T+IDE         Y   P  +K+ +S   ++ P
Sbjct: 301 FTV-------TVIDEKRKVYMIDDYAHTPDEIKSLLSTTREVFP 337


>gi|49479386|ref|YP_037974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118479132|ref|YP_896283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196035806|ref|ZP_03103208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196038844|ref|ZP_03106152.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225865894|ref|YP_002751272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228935228|ref|ZP_04098054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947632|ref|ZP_04109922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123426|ref|ZP_04252630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|301055403|ref|YP_003793614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           anthracis CI]
 gi|60390446|sp|Q6HEQ2|MURD_BACHK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158512491|sp|A0RHT3|MURD_BACAH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766037|sp|C1EPS6|MURD_BACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49330942|gb|AAT61588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418357|gb|ABK86776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195991455|gb|EDX55421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196030567|gb|EDX69166.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225789057|gb|ACO29274.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228660202|gb|EEL15838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|228812152|gb|EEM58483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824393|gb|EEM70199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|300377572|gb|ADK06476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 504

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 49/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           V GI+ DSR I     F A+ G   DG+ FI  AV+ GA  V+  T     +G    P  
Sbjct: 25  VTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGASAVITET-----VGFSECPAT 79

Query: 85  VFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           V  V D   A+ ++A        A L+          +      + +L     S+     
Sbjct: 80  VVRVSDSRKAMARMAANYYGHPCAGLKMIGVTGTNGKTTTTLLLESILKRGGHSV----G 135

Query: 139 CIGSYNNHIGVPLTLARM--PVDVDF-GIF----ELGMSHLGEIRFLTH-LVRPHI---- 186
            +G+     G     A M  P  +D  G+F    E G++H+  +   +H L +  +    
Sbjct: 136 VLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMREDGVTHV-VMEVSSHALAQGRVAECA 194

Query: 187 ---AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHAL 242
              AV T ++  HL     +E+  +AK+ +F    +TG++  +N DD +   L  K+   
Sbjct: 195 FDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVINGDDPYGARLVEKAGPG 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTL 300
                YS G S+ A   ++  +  +  S +E +L G   SM++    IG     N+L  +
Sbjct: 255 AWS--YSTG-SEAARAHVKSARLTA--SGIEARLCGPDGSMDIHSPLIGRLNLYNILAAV 309

Query: 301 GIVSILTADVDTAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              S+     + AI+  ++     +GR +R   +   GF  ++D  Y   P +M+ ++  
Sbjct: 310 -TASLAMGVPEAAIREGVAGLTSVDGRLQRV-ASPGTGFEVVVD--YAHTPDAMEKSLGC 365

Query: 360 LSQISPHGEGRRIAVLG 376
           L +++    GR + V G
Sbjct: 366 LREMT---AGRLLVVFG 379


>gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 482

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 34/369 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+ +DSR       F A+ G   DG  F+  A  +GA  ++      A I + ++PV 
Sbjct: 21  IAGLCVDSRETGAGFLFAALAGSRADGAGFVADAEARGAAAILAGEG--AEIAT-TLPVL 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLT---IALSSIKKTYAC 139
              D   A+  +A          ++AITG+ GKT+    T+++     +A +S+  T   
Sbjct: 78  RAADPRRAIALMAARFHGAQPEHVVAITGTAGKTSIATFTRQIWARCGLAAASVGTTGVV 137

Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191
             S + +  +    P+ L R+  ++   G+    M   SH  + R L   VR   A  + 
Sbjct: 138 SPSRDEYGSLTTPDPIALMRLMAELAGEGVTHAAMEASSHGIDQRRLDG-VRLAAAAFSN 196

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIYSF 250
           +   HL     IE   +AK  +F  L   G   + + DD +       + ++G K + + 
Sbjct: 197 LGHDHLDYHPDIESYFAAKMRLFTTLLPKGAPAVIFADDRWSGRAIDVATSVGAK-VMTV 255

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILT 307
           G+  N    L++ +   ++   E++ +G+   VV    G     N L+  G+     + T
Sbjct: 256 GRGGNF-LTLKRLELERQRQIAEIEAEGRIHRVVLPLAGEFQMANALVAAGLAIATGVAT 314

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           AD      AL+     +G   R   A        +   Y   P +++   +VL+ + P  
Sbjct: 315 AD------ALAALEHLKGAAGRLDLAGTTADGAPVFVDYAHKPEALE---NVLAAVRPFT 365

Query: 368 EGRRIAVLG 376
            GR + V+G
Sbjct: 366 TGRVVVVIG 374


>gi|50083547|ref|YP_045057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           sp. ADP1]
 gi|49529523|emb|CAG67235.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ADP1]
          Length = 455

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 172/462 (37%), Gaps = 85/462 (18%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG-----LVVVNTDMVASI 78
           QG+   ++ DSR   P             GHD I   VQ   G     L++   +++ S 
Sbjct: 35  QGYRVAVT-DSRETPP-------------GHDQIPQDVQTSFGQLDTELLLQAEEIILSP 80

Query: 79  G------------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           G            +  IPV G   VL          R  ++  I+AITGS  K+T   + 
Sbjct: 81  GLAPQLPEIQQAIAQGIPVIGDIQVL----------RRATQVPIVAITGSNAKSTVTTLF 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   K  A  G    ++G P  L  +  + +  + EL    L      +HL    +
Sbjct: 131 GQMAKDAGKRVAVGG----NLGRP-GLDLLKDEPELLVLELSSFQL---ETTSHL-NAEV 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHA 241
           AVI  ++  HL     +     AK  IF+G++K   +  N DDS    L       +S  
Sbjct: 182 AVILNMSEDHLDRHGDMLGYHQAKHRIFQGVKK---VVYNRDDSLTRPLVPDSTPMQSFG 238

Query: 242 LGIKTIYSFGKSKNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           L    I  +G  +  D  +   R   +  + S + +Q             G H   N L 
Sbjct: 239 LNAPDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQ-------------GTHNIANALA 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   +   V++ ++ L  F   E R +  +   +  ++   ++S   N  +  AAI 
Sbjct: 286 CLALGEAIGLPVESMLETLKQFKGLEHRCEYVKTVNDVRYY---NDSKGTNVGATLAAID 342

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L       +G+ I +LG   +     Q F + L + +  Y +    L G     ++ AL
Sbjct: 343 GLGAAIEPKQGKVIVILGGQGK----GQDFSL-LRQSVEKY-VKAAILIGEDAQQIEQAL 396

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +  + ++ T+       Q      DVV++  S +C  + +
Sbjct: 397 TETTQLVHASTLKDAVTQAQQYAQPEDVVLL--SPACASFDM 436


>gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
 gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 150/373 (40%), Gaps = 40/373 (10%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+  I + +       IG   +++     L +       G F +  
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDYLKGSSCLGK-------GHFSVVE 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + PH  VIT I   H+ ++  ++ + +A  E  E L + G   +  D+
Sbjct: 161 ADESDGSFLK--LHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPEAGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                + ++      +T  ++G   N D+  +           +V  +G ++  +   + 
Sbjct: 219 ENIRYVMSRVK----RTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGINIGRISLCVP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G H   N L    IV+     V+     KAL  F    G  +R+    +     ++D+ Y
Sbjct: 275 GEHNVLNSLAAF-IVAHECCGVENRFITKALGKF---IGAKRRFETKGHVAGVWVVDD-Y 329

Query: 347 NANPASMKAAISVLSQISPHG--------EGRRIAVLGDMCEMGELSQSF-HIDLAEVLS 397
             +P  +KA +    ++  H            R ++L D     E + +F   D   +  
Sbjct: 330 AHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKD-----EFATAFTSADEIYMTD 384

Query: 398 LYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y+     ++G     + DA+  + H  VHY  ++D +   +   +   D+V+   + S 
Sbjct: 385 IYSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRPNDLVITMGAGSI 444

Query: 456 GFY--RLINLLLE 466
             Y  +L+ +L E
Sbjct: 445 NQYGPKLLAILEE 457


>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 433

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 33/283 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           SI ++  +  +  ++ + + +R  +KA II ITGS GK+T  ++LT  + +     A  G
Sbjct: 76  SIVIWAKEQNIPVISDIELFSRF-AKAPIIGITGSNGKSTVTQLLTQMIINAGMQVAMGG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               +IG P+ L  +   +++ + EL    L      +H +   + V+  I P HL  + 
Sbjct: 135 ----NIGTPV-LDCLNEKIEYYVLELSSYQLD----YSHHLNLIVGVVLNITPDHLDRYQ 185

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI---KTIYSFGKSKNAD- 257
             +   ++K  +++  +    + +N D+      K  +   GI   K    FG     D 
Sbjct: 186 NFKHYINSKLSLYQHCQH---LVINLDEPLTP-PKVNAKCFGISIPKQADDFGTVTCHDT 241

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           + L K       S  EVQL           IG H  +N+L  L +   +   + + I+++
Sbjct: 242 YYLLKGDNVL-MSINEVQL-----------IGEHNTRNILAALALGDQIRLPIISMIQSI 289

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             F   E R +      N  ++   ++S   N  S   AI  L
Sbjct: 290 KNFKGLEHRLEWVAKKQNIDYY---NDSKATNAISTITAIQAL 329


>gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12]
 gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12]
          Length = 477

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLIAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGAGQWLVV 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   HL N+ +    I  A  E  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCL 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + ++G    AD +     Q   + +  + L +GK + V   
Sbjct: 228 DDPEVAELAGKAR----RHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKVIPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N L    +   L    +   +AL  F    G G+R+      A+  G    +
Sbjct: 284 LPGRHNVLNALAASAVGWQLGVPPEVIGRALKSF---VGIGRRFNDLGDVAIGNGACVRL 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 IDDYGHHPRELEA 353


>gi|194477145|ref|YP_002049324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
 gi|171192152|gb|ACB43114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
          Length = 457

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTL 153
           + ++ +A  +  K   IAITG+ GKTT   ++   LS         G+   +   + L+L
Sbjct: 96  MGEMVLAWEVLGKIPWIAITGTNGKTTVTHLVNHLLSYAGLEAPMCGNIGFSATDLALSL 155

Query: 154 ARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           ++  +++ D+ I EL    +        ++RP+I + TT+ P HL   + +    S K+ 
Sbjct: 156 SKKKINIPDWLIVELSSYQIES----APVIRPNIVLWTTLTPDHLERHNTLFNYRSIKSS 211

Query: 213 IFEGLEKTGTIFLNYDD 229
           +   +E +    LN DD
Sbjct: 212 L---VENSNYQILNADD 225


>gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
 gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
          Length = 481

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR + P   FFA KG  +   +F+ +AV+ G    V   D       + IP   V 
Sbjct: 38  LSYDSRDVTPSSLFFA-KGAGF-KREFLENAVKTGLSFYVSEKDY-----QVGIPAIIVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A A     + K  ++A TG+ GKTT
Sbjct: 91  DIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTT 124


>gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 358

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 28/223 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ +S DSR +    AFFA+ G H DG  FI  AV KGA  V+    + A      I   
Sbjct: 41  VHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKGAVTVIHEKPLPAY--QAHICYV 98

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTKEML--TIALSSIKKTYACIGS 142
            V DV  A+   A A        +I I  TG+ GKT+T + +   + L+  K  ++   S
Sbjct: 99  QVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEGKTSTVDFIWQLLRLAGKKAGFSSTVS 158

Query: 143 YN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186
           ++                 I V   LARM  +  ++ + E     L         VR   
Sbjct: 159 FSLGDEPVANPAHQTTPESITVQERLARMRDNGCEYAVVEASSHGLSPRTARLLHVRFDA 218

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE------KTGTI 223
            +   +   HL      E+    KA +F  L+      K GT+
Sbjct: 219 GIFMNVTQEHLEFHGTFEQYRYDKANLFRALDTHAHKKKNGTV 261


>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
 gi|158512568|sp|A1AU63|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
          Length = 446

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGI 164
           +A ++AITG+ GKTT   +   I + +  +T+        +IG PL  L      V+  +
Sbjct: 107 QAPLVAITGTNGKTTATTITGDIFIKNGFRTFV-----GGNIGNPLIELLESAEPVERVV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L  IR      RP +A +  ++  HL  ++   E   AK  IFE         
Sbjct: 162 AEISSFQLEWIRAF----RPAVAALLNLSEDHLDRYASYREYIEAKLRIFENQTADDYAV 217

Query: 225 LNYDDSFFELLKAKSHALGIKT-IYSFGKSKNAD 257
           +N DD          H+ G++  ++ F + +  D
Sbjct: 218 VNADDEL-----VMEHSRGLRACLFPFSRKQELD 246


>gi|281413643|ref|ZP_06245385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 475

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLA-RMPVDVDF 162
           R  A  + +TG+ GKTTT  M+   L +  ++  AC      ++G P+  A R P   D 
Sbjct: 92  RKTADWVCLTGTNGKTTTVTMVEAILRADGRRAVAC-----GNVGTPVLDAIRDPQGFDV 146

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      TH + P  + +  +A  H+     +EE A+AK +++    +   
Sbjct: 147 LALELSSFQL----HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANT-RVAC 201

Query: 223 IFLNYDDSFFELLKAKSHALGIKTI 247
           +F   D     L++      G + I
Sbjct: 202 VFNEQDPLTRTLVERADVQEGCRAI 226


>gi|254226619|ref|ZP_04920199.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
 gi|125620838|gb|EAZ49192.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
          Length = 506

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +E+  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LEITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
 gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
          Length = 512

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 117/311 (37%), Gaps = 74/311 (23%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-----------------LTL 153
           I +TG+ GKT+  + +  AL+++ +  A IG+  +  G+P                  +L
Sbjct: 113 IGVTGTNGKTSCTQWIAAALTALHQPCALIGTLGS--GMPGQLVPTGFTTPDAPQLQRSL 170

Query: 154 ARMPVDVDFGIFELGMS------HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           AR+    D G   + M       H G +          IAV T +   HL      +   
Sbjct: 171 ARL---RDAGAKAVAMEVSSHALHQGRVNGTAF----DIAVFTNLTQDHLDYHRTFDAYE 223

Query: 208 SAKAEIF--EGLEKTGTIFLNYDDSFFELL------KAKSHALGIKTIYSFGKSKN---- 255
           +AKA++F   GL       +N DD+    L      + ++ A GI    S G  +     
Sbjct: 224 AAKAKLFTWRGLRAA---VVNRDDAAGRRLLEKLAGRVRTIAYGIGDAPSAGADRELVAT 280

Query: 256 --------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                     F+LR        SW E  ++  ++       G     N+L  LG  S+L 
Sbjct: 281 DVRATAAGTAFRLRS-------SWGEADVEVGTL-------GTFNVSNLLAVLG--SLLA 324

Query: 308 ADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           ADV  D A+  ++      GR +R      Q    L+   Y   P ++   +  L  I+ 
Sbjct: 325 ADVPFDAAVAEIARLESVNGRMQRL-GGRPQNDEPLVVIDYAHTPDALDKTLEALRPIAA 383

Query: 366 HGEGRRIAVLG 376
              GR + + G
Sbjct: 384 ARGGRLVCMFG 394


>gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
 gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
          Length = 458

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 177/452 (39%), Gaps = 56/452 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV-------VVNTDMVASIG 79
           + G+S+   +    E  F + G   +G   I    + GA +        + N D+V  + 
Sbjct: 18  IGGVSMSGLAEILLERGFKVSGSDMNGSPMIDKLKEHGAEIYLGHNEKNINNVDIV--VY 75

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLT-IALS 131
           + +IP    + +    N +++  R       ++     IAI+G+ GKTTT  M++ IAL+
Sbjct: 76  TAAIPEDNPELIYARKNNISLMTRAEFLGSLMKGHKYNIAISGTHGKTTTTSMVSHIALT 135

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                   +G   + I   +   +     D+ I E        + F      P+I VI  
Sbjct: 136 EDVDPTILVGGNLDIINGNVLAGKS----DYFITEACEYKASFLEFY-----PYIGVILN 186

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL  +  I++I +  A+    + K G +  N DD    + +  S+A     + SFG
Sbjct: 187 IDADHLDYYKNIDDIENTFAKFVNLIPKEGYLIANADDK--RVARVASNATC--NVVSFG 242

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-GIVSILTADV 310
              N D + +     +E  +    +   S  + +  +      N+L  L  I S LT  +
Sbjct: 243 ID-NGDIRAKNI-SFNESGFSSFDVYKSSELLFNIELNVPGKHNILNALSAIASALTLKI 300

Query: 311 D--TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362
              + I  L  F   +G  +R+     +   T+ID+ Y  +P  +KA +           
Sbjct: 301 SHKSIIDGLKSF---KGTHRRFEIKGVKNGITVIDD-YAHHPTEIKATLDAAKNYPHNKI 356

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                PH   R +++  D       S SF  +D   +  +Y            L L +A+
Sbjct: 357 YCVFQPHTYSRTLSLFDD------FSNSFSGVDELVLADIYAAREKDTGVVSSLKLSEAI 410

Query: 419 PRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ +      + + +  + +S L DGD+++ 
Sbjct: 411 NKNGVKSSNLHSFEDIVNYFKSKLNDGDILLT 442


>gi|300774447|ref|ZP_07084310.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
 gi|300506262|gb|EFK37397.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
          Length = 452

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 120/309 (38%), Gaps = 33/309 (10%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           ++QK   LV+       +I +L I  +   +    L +  V   +      IAI G+ GK
Sbjct: 67  SLQKEDTLVI----YTPAIKTLGILDYFNQNQFEVLKRAKVLGLITENTDCIAIAGTHGK 122

Query: 120 TTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TTT  ++          ++C   G   N     L    M   V+   ++    +L     
Sbjct: 123 TTTSTLVAHLCKEADLPFSCFLGGISENFKSNFLYNGSMYSVVEADEYDRSFLNLS---- 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P  AV+T+    HL       +I   K+ I EG  +   + +  D   F + K 
Sbjct: 179 ------PDWAVVTSTDADHL-------DIYGDKSHIEEGFRQFAAL-VPQDKQLF-IRKG 223

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
                G +T   +  ++ AD+     +   ++ + +     +++ + V    G H  +N 
Sbjct: 224 LEIGRGHQT---YAVNEPADYYSDNLRMDHDKIYFDFHTPTETVKDFVWEIPGIHNVENA 280

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L I+  L AD DT  KA+S F   +G  +RY   + Q     ID+ Y  +P  + A 
Sbjct: 281 TAALAILHNLGADFDTLKKAISNF---KGIKRRYTKHIYQNGKIYIDD-YAHHPTEINAV 336

Query: 357 ISVLSQISP 365
           +S +    P
Sbjct: 337 MSSIRTFYP 345


>gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 448

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G+       P  L  +  DV+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLG-----PPALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|225010501|ref|ZP_03700972.1| cytoplasmic peptidoglycan synthetase domain protein [Flavobacteria
           bacterium MS024-3C]
 gi|225005330|gb|EEG43281.1| cytoplasmic peptidoglycan synthetase domain protein [Flavobacteria
           bacterium MS024-3C]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 148/371 (39%), Gaps = 58/371 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGI 164
           T + I GS GKTT   M+   +   +K    +      +G  L     +  +  + DF +
Sbjct: 104 TRVVIGGSHGKTTITSMILHVMHYHEKEIDFM------VGAQLDGFDKMVHLTEENDFML 157

Query: 165 FELGMSHL-----GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            E G  +L      + +FL +  +PHIA+++ IA  H++ F   E   +      + +  
Sbjct: 158 LE-GDEYLSSPIDAQSKFLHY--KPHIALLSGIAWDHINVFPTFESYCAPFESFIDSIVA 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G++  N +D     +  K+     K  Y+   +  A          S  +++E +    
Sbjct: 215 GGSLTFNQEDQVLNEMVEKATNTIRKIAYT---TPEASID-------SGVTYLETEEGPL 264

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----N 335
            +E+     G H   N+     I   +  D     +A+S F     RG   R  L    N
Sbjct: 265 PLEI----FGMHNLNNLAGAKWICQHMGIDALDFYEAISSF-----RGASKRLELVAKNN 315

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q   T I + +   P+ +KA  + + +  P    R++ V+ ++     L  SF  +    
Sbjct: 316 Q---TAIYKDFAHAPSKVKATTAAVKEQYP---DRKLVVVLELHTYSSLDASFLKEYKNA 369

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHV----------HYSETMDGLFLFIQSSLVDGD 445
           L+  ++  V+     VLA+K+  P S  V              T +GL +F++   ++G 
Sbjct: 370 LAKADVGMVFYEP-AVLAIKEREPISAEVIKNAFGSAALQIETTPEGLAVFLRDLPLEGT 428

Query: 446 VVVVKSSNSCG 456
            ++  SS + G
Sbjct: 429 ALLFMSSGNYG 439


>gi|26988069|ref|NP_743494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida KT2440]
 gi|38258004|sp|Q88N78|MURD_PSEPK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24982793|gb|AAN66958.1|AE016324_8 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           KT2440]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AI+GS  K+T   ++    +   K  A  G    ++G P  L  +  D++  + 
Sbjct: 109 AKAPIVAISGSNAKSTVTTLVGEMAAKAGKRVAVGG----NLGTP-ALDLLADDIELYVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 164 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +      +  ++FG +   DF+    ++   + ++  + Q
Sbjct: 217 NRQDALSRPLPVEG-----RPCWTFGLNP-PDFKAFGLREVDGEKYLAFEFQ 262


>gi|85707193|ref|ZP_01038279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
 gi|85668247|gb|EAQ23122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
          Length = 465

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  ++   L    +T    G    +IG  +     P D    + EL  
Sbjct: 122 VIAVTGSNGKSTTSALIHHVLVEAGRTAQLAG----NIGRGVLDIDPPEDGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 R LT    P +AV T  +P HL   +G+    +AK  +F
Sbjct: 178 YQTDLARALT----PDVAVFTNFSPDHLDRHAGLGGYFAAKRRLF 218


>gi|148257421|ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. BTAi1]
 gi|146409594|gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp.
           BTAi1]
          Length = 466

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 16/154 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  +AITG+ GK+TT    T  ++ + +T         +IG  +     P         +
Sbjct: 114 APFVAITGTNGKSTT----TALIAHLMQTAGYDTQLGGNIGTAILSLEPP--------RM 161

Query: 168 GMSHLGEIRF----LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           G  H+ E+      LT  + P + ++  ++  H+     IE  A+ K  +  G++  GT 
Sbjct: 162 GRVHVIEMSSYQIDLTPSLDPTVGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPEGTA 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +  DD F   +  +    G + +    K+  AD
Sbjct: 222 IIGVDDGFSRAIADRLDQAGKRVVRVSVKNPLAD 255


>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 448

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 17/151 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIAI+GS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPIIAISGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  ++  H+  +SG+     AK  IF G  +   +  
Sbjct: 162 ELSSFQLET----TDHLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQ---VVF 214

Query: 226 NYDDSFF-----ELLKAKSHALGIKTIYSFG 251
           N  D+       E +   S  LG+     FG
Sbjct: 215 NRQDALTRPLLGEGMPCWSFGLGVPDFKGFG 245


>gi|256421380|ref|YP_003122033.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
 gi|256036288|gb|ACU59832.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 39/313 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + GS GKTTT  M+   L    + +   +G+        + +   PV V  G  +   
Sbjct: 107 VVVGGSHGKTTTTAMIMHVLQQSGQAFDYLVGARLAGFPQSVNITDAPVIVCEG--DEYP 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           + + E R   H + PHIAV+T IA  H++ F   E      A     ++   T+  N  D
Sbjct: 165 ASVIEKRPKFHFLHPHIAVLTGIAWDHINVFPTFENYLEQFAIFLRTMKAGHTLIYNNTD 224

Query: 230 SFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HH 286
              EL+K  K+  L +K +          + + + +  +  + +    Q   +EV   H+
Sbjct: 225 P--ELVKLVKAEGLHLKLV---------PYDIPQHQINNGVTTVHFGDQQTELEVFGDHN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLI 342
            +  H A+ +   LGI        +  +KA++ F     R    GK   CA+ + F    
Sbjct: 274 LLNMHAARLVCNELGISD------EVFLKAIATFKGAAKRLELVGKNEHCAIYRDF---- 323

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                  P+ +KA IS L    P    R++  + ++     L+  F +     +   +I 
Sbjct: 324 ----AHAPSKVKATISALRDQYPQ---RKLIGVLELHTYSSLNADFMVQYQGCMDKADIP 376

Query: 403 HVWLSGFHVLALK 415
            V+ S  H L +K
Sbjct: 377 VVFYSK-HALEIK 388


>gi|326693779|ref|ZP_08230784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           argentinum KCTC 3773]
          Length = 448

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 23/161 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIA 129
           +T +V    +L IPV         L ++AVA  L S +  +IA+TGS GKTTT  ++   
Sbjct: 83  DTALVQRAIALDIPV---------LTEVAVA--LSSFEGRLIAVTGSNGKTTTTSLIREM 131

Query: 130 LSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           L +  +     G    +IG P++  +A +  D D  + EL    L  +      ++P IA
Sbjct: 132 LLADGQRVTTAG----NIGTPVSEVVADLTAD-DTLLLELSSFQLMGVPD----IQPDIA 182

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +IT I   HL      E+  +AK ++ +      T+ LN D
Sbjct: 183 LITNIFANHLDYHGTREQYVAAKFQLTQNQTVAQTLVLNAD 223


>gi|33151489|ref|NP_872842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           ducreyi 35000HP]
 gi|60390541|sp|Q7VP56|MURD_HAEDU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33147709|gb|AAP95231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           ducreyi 35000HP]
          Length = 435

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITGS GK+T    +T  +S + +          +IG+P  L+ +    +  +
Sbjct: 104 EAKAPIIAITGSNGKST----VTTLVSEMAQQAGIKVGMGGNIGIP-ALSLLNKGYELFV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T+ ++   A I  ++  H+  ++  E    AK  I+E  E    + 
Sbjct: 159 LELSSFQLET----TYSLKAKAATILNVSQDHMDRYASGEHYRQAKLRIYENAEY---VI 211

Query: 225 LNYDDSFFELLKAKS 239
           +N DD     L ++S
Sbjct: 212 VNDDDPLTYPLPSQS 226


>gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 516

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 156/387 (40%), Gaps = 54/387 (13%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-- 79
           VP   V G+++ ++ + P + F A+ G    G  +   A+++GA  V+ +   VA +G  
Sbjct: 33  VPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAVAVLTDAAGVAEMGAS 92

Query: 80  SLSIPVF---GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           + ++P         VLGAL    V      + T+I ITG+ GKTTT  ++   L +  +T
Sbjct: 93  ASAVPTLVHPAPRGVLGALAAT-VYGNPSERTTVIGITGTSGKTTTTYLVEAGLRAAGRT 151

Query: 137 YACIGSYNNHI---GVP--LTLARMPV-----------DVDFGIFELGMSH---LGEIRF 177
              IG+    I    VP  LT    P             VD  + E+  SH   LG +  
Sbjct: 152 AGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVMEV-SSHALALGRVDG 210

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFFELL 235
               V       T ++  HL     + +   AKA++F+     +   + +  DD     +
Sbjct: 211 TGFAV----GAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVVVCVDDEAGRAM 266

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQ-------CSEQSWMEVQLQGKSMEVVHHGI 288
             ++   G   I     + +A  Q   W+           Q +  +   G    V     
Sbjct: 267 AMRAMQGGAAAI-----TVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHRVGIRLP 321

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G++   N L+ L I+  +    + A   L +     GR +   C   Q F  L+D  Y  
Sbjct: 322 GHYNVANCLVALAILDAVGVSPEQAAPGL-LDTRVPGRMEEIDC--GQDFLALVD--YAH 376

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375
            P +++A ++ L++      GRR+AV+
Sbjct: 377 KPGALRAVLTSLAR-----PGRRLAVV 398


>gi|254292767|ref|YP_003058790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hirschia
           baltica ATCC 49814]
 gi|254041298|gb|ACT58093.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hirschia baltica
           ATCC 49814]
          Length = 474

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 81  LSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           + +PV G  ++   A+ +L   AR +    I+ ITG+ GK+TT  ++   L    +    
Sbjct: 92  VGVPVVGDMELFARAVAELPAYARPK----IVGITGTNGKSTTTALIGHILERAGRDVRV 147

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G  N  +GV L L  M  +  + + EL    L  I  L    R  +AV   ++P HL  
Sbjct: 148 GG--NIGVGV-LDLKAMNANSIY-VLELSSYQLDLIDSL----RCDVAVFLNVSPDHLDR 199

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             G++   +AK  IF       T  +  DD   ++L
Sbjct: 200 HGGMQGYVAAKNRIFRNQTSADTAVIGVDDMRTQIL 235


>gi|229817317|ref|ZP_04447599.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
 gi|229785106|gb|EEP21220.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVD 159
           R    A  I ITG+ GKT+T EM +  LS+      T   I S N    + ++L+R   +
Sbjct: 96  RTGKPAPWIGITGTNGKTSTTEMTSAMLSACGLDAPTAGNIASGN----MSMSLSRCVTN 151

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S   ++ F T  +    A IT IA  HL    G E  A+ KA++F  +++
Sbjct: 152 PKHDALCVELSSF-QMHF-TDSLELDCAAITNIADDHLDWHGGRENYAADKAKVFHRVKR 209

Query: 220 TGTIFLNYDDS 230
              +  N DD+
Sbjct: 210 --ALVYNADDA 218


>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
 gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
          Length = 556

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L QA+  +  G +    VN +SIDSR+I+  + F A++G    G  FI  A++KGA  ++
Sbjct: 18  LPQALSIYLDGAISAIPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAIL 77

Query: 70  VNT---DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124
             T   D+        IPV  +  +   L+++A         K  +I ITG+ GKT+  +
Sbjct: 78  SATTASDVFVEYRD-EIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGKTSCAQ 136

Query: 125 M 125
           +
Sbjct: 137 I 137


>gi|300905497|ref|ZP_07123261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300919643|ref|ZP_07136134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|301303812|ref|ZP_07209932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|300402647|gb|EFJ86185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300413283|gb|EFJ96593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|300840939|gb|EFK68699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|315253162|gb|EFU33130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 85-1]
          Length = 438

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 33/261 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  +
Sbjct: 102 EAQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279
            +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K
Sbjct: 210 VVNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVK 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G H   N L  L +         +++KAL+ F    G   R+   L     
Sbjct: 261 EMKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGV 313

Query: 340 TLIDESYNANPASMKAAISVL 360
             I++S   N  S +AA++ L
Sbjct: 314 RWINDSKATNVGSTEAALNGL 334


>gi|262280495|ref|ZP_06058279.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|299768392|ref|YP_003730418.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
 gi|262258273|gb|EEY77007.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|298698480|gb|ADI89045.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
          Length = 482

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 34/297 (11%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L           F + 
Sbjct: 125 IAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALGE-------SRFIVA 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 177 EADESDASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   +S   V  +G+  + +  +
Sbjct: 235 DDANIREIMPR---VG-RPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTIN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--- 343
             G H   N L  +G+ +      D   +AL+ F    G G+R++    QG F L D   
Sbjct: 291 QPGMHNILNALAAIGVATDEGVSDDAISRALAGF---SGVGRRFQV---QGEFELADGNV 344

Query: 344 ---ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS
Sbjct: 345 KLVDDYGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLS 397


>gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
 gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
          Length = 509

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           +  ++AITG+ GKTT   M    + +   T    G+ +      L+ A    D+ +  + 
Sbjct: 129 QPKVLAITGTNGKTTVTAMTRQLVQASGHTAKVAGNISPAALTALSDALAADDLPEVWVL 188

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +R L+    P  AV+  +   HL     ++  A+AKA +  G+ +   +  
Sbjct: 189 ELSSFQLESVRTLS----PDAAVVLNVTQDHLDWHGSMQAYAAAKARLL-GMSRVAIV-- 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGK 252
           N DD     +     AL ++   SFG+
Sbjct: 242 NRDDPLVMAMADDVKALAVR---SFGR 265


>gi|256830370|ref|YP_003159098.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579546|gb|ACU90682.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
          Length = 458

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 109/286 (38%), Gaps = 29/286 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIG 141
           +P+    ++L  L +L V          +A+ G+ GKTTT  +L TI + +       IG
Sbjct: 89  VPIIPRAEMLAELMRLKVG---------VAVAGTHGKTTTTSLLATIFMEAHLDPTVIIG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              N  G    L +       G + +  +   +  FL  L  P I+++T +   HL  + 
Sbjct: 140 GRLNAYGSNAMLGQ-------GRYLIAEADESDGSFLCLL--PRISIVTNVDADHLDYYK 190

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++EI  +  +    +   G   +  DD   + + ++      + + ++G  +  D +  
Sbjct: 191 DLDEIRDSFVDFMNSVPFYGLNVVCGDDKGVQSILSRVR----RPVMTYGFGEENDLRA- 245

Query: 262 KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +   C   S   V  Q +   EV     G H   N L  +G+           I  L  F
Sbjct: 246 EIISCEAGSRFNVYRQSEFWGEVTLTHPGRHNVLNALAAIGVAMEAGVPKKDIIHGLGAF 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               G G+R+     +    ++D+ Y  +P  + A +       PH
Sbjct: 306 ---AGVGRRFEHKGERNGVLVVDD-YGHHPTEIAATLETARLCYPH 347


>gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
 gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
          Length = 471

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           +++DSR  A  + F AIKG   DG  +I  A+ +G   VV      A+ G +     +PV
Sbjct: 1   MTLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPV 60

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             ++D+   L+ LA A       K  ++ +TG+ GKTTT +++      + +T A +G+ 
Sbjct: 61  VYLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120

Query: 144 NN----HIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTH-LVRPHI-------AVI 189
            N     +          VD+   + +L    + L  +   +H LV+  +       AV 
Sbjct: 121 GNGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVF 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           T ++  HL     +E   +AK  +F   +    I    DD   + L+    A  +
Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQIINADDDVGLKWLQRLPQACAV 235


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 27/242 (11%)

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMSHLGEIRFLTHL 181
           E+ T+A   +K           +IG PL +  +    D G+   E+    L  IR     
Sbjct: 129 EIFTVAQEEVK--------IRGNIGYPL-IEDITSLTDKGVVVAEISSFQLENIRDF--- 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I++I  + P HL+     E+  +AK +IF    ++    LNYDD   EL +  +  
Sbjct: 177 -RPKISLILNLTPDHLNRHGTFEDYIAAKKKIFINQTESDYTVLNYDD---ELTRGLADE 232

Query: 242 LGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
            G + IY   +S+ N      + K  +  +     L    +++   GI G H  +N L  
Sbjct: 233 TGGEVIYFSQQSRLNHGIYAAEGKIINNLTADNEPL----IQIDETGIKGPHNLENALGA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I  +   DV    K L  F   E R +    A  +G    I++S   NPA+   A+  
Sbjct: 289 VVIALLRGIDVKIIRKVLQEFSGIEHRIE--EVATIEG-IKYINDSKATNPAAAIKALET 345

Query: 360 LS 361
            S
Sbjct: 346 FS 347


>gi|306818519|ref|ZP_07452242.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
 gi|304648692|gb|EFM45994.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
          Length = 490

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG 163
           RSK  ++A+ G+ GKTTT  ML+ AL  +    +  IG      G   T AR+    +F 
Sbjct: 118 RSK-DLLAVAGAHGKTTTSAMLSKALWDVGADPSFAIGGVILEYG---TGARLGRGREF- 172

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S   +  FL +   P + V+T I P HL ++   E    A  +    +   G I
Sbjct: 173 VIEADES---DGSFLNYA--PLVEVLTNIEPDHLDHWGSREAFDQAFVDFTARIRPGGAI 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG 251
               DD+    L  + H+      Y FG
Sbjct: 228 VACGDDAGIRRLAPRFHSGAALVSYGFG 255


>gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale
          ATCC 33656]
 gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale
          ATCC 33656]
          Length = 495

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 25/53 (47%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
          DSR +     F  I G   D HDFI   V+KGA  VVV  D+    G   I V
Sbjct: 34 DSRKVEKASVFVCISGAVSDAHDFIPDVVKKGAAAVVVEKDVTPIEGVTYIKV 86


>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525523|gb|EEF94628.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
          Length = 446

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 114/303 (37%), Gaps = 63/303 (20%)

Query: 39  PQEAF-----FAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           P E F     F +K P  + H  FIL   ++G                  IPV+      
Sbjct: 60  PDELFERDFDFVVKNPGINYHAPFILRLKERG------------------IPVY------ 95

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-- 150
               ++ +  ++  K   IA+TG+ GKTTT  ++   L +  +     G+Y    G+P  
Sbjct: 96  ---TEIELGYKVAKKQHYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNY----GIPYC 148

Query: 151 -LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            + L     + +     + MS+   I       +P +A +  + P HL     ++E  ++
Sbjct: 149 EVVLNEHLYEEEGHDIVVEMSNFQLIDI--EEFKPEVATVLNLTPDHLDYMDSLDEYYAS 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------KW 263
           K  I+   ++      N DD   +   AK        I +F      D +L+      K 
Sbjct: 207 KMRIYMNQDEKDLFINNSDDETLQSYLAKYPVPS--RIETFSVKGQGDVELKDNAIYYKG 264

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++  ++  +++             +G H   NM++ +   + +   +D+    L+ F   
Sbjct: 265 QKVIDRDEIKI-------------VGLHNVANMMVAIAACASVGVSLDSIHDTLAAFKGV 311

Query: 324 EGR 326
           E R
Sbjct: 312 EHR 314


>gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
 gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
          Length = 464

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 26/114 (22%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GK+TT  ++   L               H G P  LA    ++  G+ ++  
Sbjct: 122 IIAVTGSNGKSTTSALIHHIL--------------KHAGRPTQLAG---NIGRGVLDIEP 164

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +  GE+       + T L R   P IAV T ++P HL   +G+    +AK  +F
Sbjct: 165 AIDGEVVVLELSSYQTDLARNLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLF 218


>gi|160903250|ref|YP_001568831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Petrotoga mobilis
           SJ95]
 gi|226722942|sp|A9BGS7|MURD_PETMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160360894|gb|ABX32508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Petrotoga mobilis
           SJ95]
          Length = 431

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +   KA  I ITG+ GK+TT    T  +  I K    +     +IGVPL  A+    +++
Sbjct: 99  KENKKAVFIGITGTDGKSTT----TSLIGHILKFADPLTFVGGNIGVPL--AKASETLNY 152

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +    F +    P I+V+T +AP HL+    + +    KA++     K+G 
Sbjct: 153 YVVEVSSFQI----FWSKTFTPEISVLTNLAPDHLNWHKDLNDYYQTKAKLLLRTLKSGG 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           + +  +D+   LL  K +    + I +F K+
Sbjct: 209 VAVVNEDA-VNLLNLKDYQASERII-TFSKN 237


>gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 50/378 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR++ P + FFA+ G   DG  FI  A+  GA  V  +    A  G L++P  
Sbjct: 27  VGGLAVDSRAVKPGDLFFALAGAKTDGARFIAAAIAAGAVAVAGDH---APDGELAVPFV 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + +   AL   A     R   TI A+TG+ GKT+           +    A IG+    
Sbjct: 84  PLGNPRRALALAAARFYSRQPRTIAAVTGTSGKTSVAAFTRHIWQRLGHAAASIGT---- 139

Query: 147 IGVPLTLARM---------PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187
           IG+ +T  R          P+ +   + E+   G++HL       G  +F    VR    
Sbjct: 140 IGL-VTPTRSVYGSLTTPDPIALHRSLDEIAGEGVTHLALEASSHGLDQFRLDGVRVAAG 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---TIFLNYDDSFFELLKAKSHALGI 244
             T ++  H+     +    +AK  +F  L   G    I  ++D S   +  A++  L +
Sbjct: 199 GFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVIDGGAAVISADHDCSAQVIDAARARGLRL 258

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            T+   G++ +A   +R  +   +     + ++  G+   V    +G    +N L+  G+
Sbjct: 259 ITV---GRNGDAGEGIRLIEASIDGFAQKLTIEHAGRRTAVHLPLVGEFQIENALVAAGL 315

Query: 303 VSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           V     D   A  AL       GR    G+R      +G    +D  Y   P ++  A+ 
Sbjct: 316 VIGAGGDPAAAFAALDHLEGAPGRLDFVGER------RGAPVFVD--YAHKPDALAKALQ 367

Query: 359 VLSQISPHGEGRRIAVLG 376
            L    P+ + + + V G
Sbjct: 368 AL---RPYAKRKLVVVFG 382


>gi|296504406|ref|YP_003666106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
 gi|296325458|gb|ADH08386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
          Length = 424

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 84  SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 135

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 136 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 195

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  +++   +++ G K ++S  K 
Sbjct: 196 INADDA--DVMALSAYSKGQKILFSTTKE 222


>gi|254480262|ref|ZP_05093510.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
 gi|214039824|gb|EEB80483.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
          Length = 478

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 145/366 (39%), Gaps = 43/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++      + +  T+  IG   N +G    L           F + 
Sbjct: 119 IAVAGTHGKTTTTSLIANVFGEAGLDPTF-VIGGLVNSVGSNAQLG-------ASRFLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P + V+T I   H+  + G    +     E    L   G   L  
Sbjct: 171 EADESDASFL-HL-QPMVTVVTNIEADHMDTYGGDFAVLRRTFLEFLHNLPFYGVAVLCI 228

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVH 285
           DD    ELL   S     + + ++G + +ADF++   ++    +   + +   + + V  
Sbjct: 229 DDPVIRELLPEVS-----RQVVTYGFADDADFRISNMQRDGLTTGFTINRPSNEPLPVTL 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTL 341
           +  G H   N   T+ +      + +     L+ F    G G+R+       L  G   L
Sbjct: 284 NMPGLHNVLNAAATVAVACDEGLEDEAIQSGLAGF---AGVGRRFTRMGELNLPGGTALL 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ Y  +P  ++A +    Q  P  E R + V          ++  + D   VLS  ++
Sbjct: 341 VDD-YGHHPTEVRATLDSARQAWP--EQRVVMVY--QPHRYSRTRDLYDDFVSVLSRCDV 395

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
                V+ +G   +   D  +L RSI         + E ++ +   + S +  GDVVV +
Sbjct: 396 LILLEVYAAGEEAIPGADSRSLARSIRQRGQLEPIFVENIEDVPQILCSVVEQGDVVVTQ 455

Query: 451 SSNSCG 456
            + + G
Sbjct: 456 GAGNIG 461


>gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88]
 gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88]
          Length = 456

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 62/298 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----PLTLARMPVDVDFGIF 165
           IA++G+ GKTTT  M++                  HI V     P  L    +++  G  
Sbjct: 113 IAVSGTHGKTTTTSMMS------------------HITVNANLDPTILVGGELNIINGNV 154

Query: 166 ELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             G S      FLT             P+I VI  I   HL  +  I  I +A ++    
Sbjct: 155 RTGKSEY----FLTEACEYKESFLKFFPYIGVILNIDADHLDYYKDINHIKNAFSKFANL 210

Query: 217 LEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSW 271
           + K G  I    D++  +++K         TI ++G +K  D Q +      K C+  S+
Sbjct: 211 IPKDGYLIACAEDENINDIIKNIDC-----TIITYGLNK-GDIQAKNITFDNKGCA--SF 262

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             ++       V  +  G +   N L ++ +   L  D ++ IK L  FH   G  +R+ 
Sbjct: 263 DVIKNSSVLFSVKLNVPGSYNVLNALASICVSFALNIDKESIIKGLESFH---GTHRRFE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCE 380
               +   T+I E Y  +P  +KA +S         +L    PH   R  ++  D  E
Sbjct: 320 LKGVRNDVTVI-EDYAHHPTEIKATLSAAKNYPSNRILCVFQPHTYTRTYSLFEDFTE 376


>gi|323464173|gb|ADX76326.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 437

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 36/263 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        ++  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPQS--------EYFAFE---- 150

Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTIFLN 226
              E R  FL++   P  A+IT I   H   F  ++++ +A    F+G+ K     I   
Sbjct: 151 -ACEYRRHFLSY--SPDYAIITNIDFDHPDYFKDVDDVINA----FQGMAKNVKKAIIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD + + ++          +Y +G   + D   +  +     +  +V ++G+     V 
Sbjct: 204 GDDPYVKNIEVDI------PVYYYGFDTSMDVYAQNIEVTGSGTEFDVYVKGEFYGHFVS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L I  +   ++D   +AL  F    G  +R+     Q    L+D+ 
Sbjct: 258 PQYGDHNILNALAVLTISYLENLNLDNIKEALITFG---GVKRRFNETFAQN-QVLVDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGE 368
           Y  +P  + A I    +  P+ E
Sbjct: 313 YAHHPREISATIETARKKYPNKE 335


>gi|289704957|ref|ZP_06501372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
 gi|289558293|gb|EFD51569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
          Length = 527

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLA-RMPVDVDF 162
           R  A  + +TG+ GKTTT  M+   L +  ++  AC      ++G P+  A R P   D 
Sbjct: 144 RKTADWVCLTGTNGKTTTVTMVEAILRADGRRAVAC-----GNVGTPVLDAIRDPEGFDV 198

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      TH + P  + +  +A  H+     +EE A+AK +++    +   
Sbjct: 199 LALELSSFQL----HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANT-RVAC 253

Query: 223 IFLNYDDSFFELLKAKSHALGIKTI 247
           +F   D     L++      G + I
Sbjct: 254 VFNEQDPVTRTLVERADVQEGCRAI 278


>gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
 gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
          Length = 471

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 39/280 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           +++DSR  A  + F AIKG   DG  +I  A+ +G   V+   +  A  G +     +PV
Sbjct: 1   MTLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPV 60

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             ++D+   L+ LA     +  +K  ++ +TG+ GKTTT +++      + +T A +G+ 
Sbjct: 61  IYLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120

Query: 144 NN----HIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTH-LVRPHI-------AVI 189
            N    H+          VD+   + +L    + L  +   +H LV+  +       AV 
Sbjct: 121 GNGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVF 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +E   +AK  +F     T +  +N DD           A+G+K +  
Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFS-THNTKSQIINADD-----------AIGLKWLQR 228

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             ++     +  K  Q  +  W+      K+MEV +H  G
Sbjct: 229 LPQACAVTME-NKIPQDWQGPWL------KAMEVEYHDKG 261


>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 471

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GKTTT  ++   + S KK    +G+  N     +       DV   I EL   
Sbjct: 129 IAVTGTDGKTTTVTLVHDIIKSYKKA-RLLGNVGNTFSKEIETIEEDEDV---ILELSSF 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  +         HIA +  IA  HL  +  IE+  + K  I     K   + LNYD+ 
Sbjct: 185 QLETVEKF----HAHIAAVLNIAEDHLDRYKDIEDYFNTKKNITINQNKNDFLILNYDNI 240

Query: 231 F 231
           +
Sbjct: 241 Y 241


>gi|226328330|ref|ZP_03803848.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
 gi|225203063|gb|EEG85417.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
          Length = 436

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 111/264 (42%), Gaps = 41/264 (15%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
            +KA I+AITGS GK+T   ++   ++S       +G    +IGVP LTL   P   D  
Sbjct: 102 EAKAPIVAITGSNGKSTVTTLVG-EMASADGIRVGVGG---NIGVPALTLLTEP--HDLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A +  I+  H++ +  G+E+   AK  I++  +    
Sbjct: 156 VLELSSFQLET----TYSLKAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDNAK---A 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQ--SWMEVQL 276
              N DD+    L  K +        SFG  +  D+QL    R  K   E+  S  E+ L
Sbjct: 209 CVYNEDDALTLPLAGKDN-----RCVSFGVGQ-GDYQLDNINRILKVKGEKVLSTAEMYL 262

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+     H+      A  +   +GI    T      I+ L  +H   G   R++   + 
Sbjct: 263 SGQ-----HNYTNALAALALADAVGISRKAT------IEVLKTYH---GLAHRFQLVYSH 308

Query: 337 GFFTLIDESYNANPASMKAAISVL 360
                I++S   N  S +AA+  L
Sbjct: 309 QNVRWINDSKATNVGSTEAALRGL 332


>gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena
           XCL-2]
 gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 461

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 42/373 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           K + +VVV+T +      +    F  +  +  + + A+ A L      IAI G+ GKTTT
Sbjct: 63  KNSDVVVVSTAIAKDNPEV---CFAKESRIPVIPRAAMLAELMRMRFGIAIAGTHGKTTT 119

Query: 123 KEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             + +  L+   +  T+   G  N       + AR+     + I E   S   +  FL H
Sbjct: 120 TSLASAILTEGGLDPTFVIGGKLNQFD----SNARLG-SSQYLIAEADES---DASFL-H 170

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           L  P ++V+T I   H+  + G    +     E    L   G   +  DD   + +  K 
Sbjct: 171 L-SPMMSVVTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVAIVCIDDQNIQNMLPKL 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNM 296
                + I ++G S++AD  +R  +   +   M   ++   +    VV +  G H   N 
Sbjct: 230 S----RKIRTYGFSESAD--IRATEVLHQGLSMHFNVKANDLPEFSVVLNQPGKHNVLNA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPAS 352
           L  + +   L   +++  KAL+ F    G G+R+      ++     TL+D+ Y  +P  
Sbjct: 284 LAAITVALELDVSIESIQKALAGF---GGVGRRFEVYPSRSIGHKNVTLVDD-YGHHPTE 339

Query: 353 MKAAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVW 405
           ++A +S      P        +  R +   D+ +  E  Q+  H DL  +L +Y      
Sbjct: 340 LEATLSTARMAFPEKRLVLVFQPHRYSRTRDLFD--EFVQALQHADLLVLLDVYPAGEAP 397

Query: 406 LSGFHVLALKDAL 418
           ++ F   AL  A+
Sbjct: 398 IAAFDSKALLQAM 410


>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
 gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 124/320 (38%), Gaps = 45/320 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H L+  +  H   +VP+    +  I  DSR +     F  +KG   D H+F   A  +G
Sbjct: 3   LHTLVSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD   E     + A    T+ ++G   ++D   +     S  +   +   
Sbjct: 231 NRKKYAVLNSDDPVTEEYMRSTAA----TVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTP 286

Query: 278 GKSMEVVHHGIGYHMAQNML 297
            +S++V    IG     N+L
Sbjct: 287 YESVDVTMKLIGKFNVYNVL 306


>gi|206976740|ref|ZP_03237644.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217961334|ref|YP_002339902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus AH187]
 gi|229140561|ref|ZP_04269116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
 gi|226711882|sp|B7HM33|MURD_BACC7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206745050|gb|EDZ56453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217063256|gb|ACJ77506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH187]
 gi|228643122|gb|EEK99398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  +++   +++ G K ++S  K 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE 248


>gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
 gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
          Length = 515

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 118/313 (37%), Gaps = 48/313 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++  S+ + P + + A+ G    G +F+  A + GA  V+ +    ++     +P+ 
Sbjct: 42  VTGVTHASQEVRPGDLYAALPGARRHGAEFVPAAARAGAVAVLTDPAGASATAQAGLPML 101

Query: 87  GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L  LA A      A   +I +TG+ GKT+T  ++   L +       IG+  
Sbjct: 102 VVPDPRAVLGDLASAVYGDPTAGLAVIGVTGTAGKTSTAYLVESGLRAAGHVTGLIGTVE 161

Query: 145 NHIG---------VP--------LTLAR----MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +G          P        L  AR      V ++     L M  +G +RF      
Sbjct: 162 TRLGDLAMDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVRFT----- 216

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +   T     HL       +  +AKA++F+G  +     LN+DD     L  ++    
Sbjct: 217 --VGGYTNFGSDHLDFHVDSADYFAAKAKLFDG--RCEVEVLNHDDPALRPLYRQA---- 268

Query: 244 IKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298
               YS    ++A +    W      E       L G     +  G+   G H   N L+
Sbjct: 269 -TVTYSAAGDRSATW----WADAVGGEGYAQRFTLHGPDGLALPAGVALPGRHNVANALL 323

Query: 299 TLGIVSILTADVD 311
            + +  ++ A VD
Sbjct: 324 AIAV--LVAAGVD 334


>gi|28871542|ref|NP_794161.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966566|ref|ZP_03394717.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|302059793|ref|ZP_07251334.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131740|ref|ZP_07257730.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999568|sp|Q87WY6|MURC_PSESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28854793|gb|AAO57856.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928416|gb|EEB61960.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|331016735|gb|EGH96791.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 125/303 (41%), Gaps = 38/303 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H++ + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
           DD        L+K        +   ++G S+++D +    +Q    ++  V  + +  ++
Sbjct: 229 DDPVVRDILPLVK--------RPTMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 281 VSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVEGGH 337

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D+ Y  +P  + A IS +    P    RR+ ++         ++  + D  +VL+ 
Sbjct: 338 VMLVDD-YGHHPREVAAVISAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLAE 392

Query: 399 YNI 401
            N+
Sbjct: 393 ANV 395


>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS223]
 gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS223]
          Length = 439

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 136/361 (37%), Gaps = 67/361 (18%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITGS GK+T    +T  +  + +      +   +IGVP  L  +  + D  + E
Sbjct: 108 KPCVIGITGSNGKST----VTTLVGEMAREAGIAVAVGGNIGVP-ALDLLHENADLFVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A    I+  H+  +S I     AK  ++   +++  +  N
Sbjct: 163 LSSFQLET----THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFN 215

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
            DD      E +   S  L       +G S +     + +   SE     EV L      
Sbjct: 216 RDDKLTVPPEPMNQNSFGLAAPEADEWGISDS-----KIYHGSSEIMPITEVSL------ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT 340
                IG H   N+L  + +V ++  D     K    F      G  +RC +   +   T
Sbjct: 265 -----IGSHNHANLLAAMALVDVVGVDKQIMAKVARSF-----TGLSHRCEVVGIKNGVT 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDLAE 394
            +++S   N   + A ++ L  +S H        LGD+  +      G   +   + LA+
Sbjct: 315 YVNDSKATN---VGATVAALDGLSDH--------LGDIILIAGGDGKGADFKPLGVALAK 363

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           V  L  +      G  + ALKD   R       ETM             GD+V++  S +
Sbjct: 364 VTHLITLGR---DGKKIAALKDGAVR------VETMAAAVTKAAELATSGDIVLL--SPA 412

Query: 455 C 455
           C
Sbjct: 413 C 413


>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
 gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
          Length = 499

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 37/376 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG---PHYDGHDFILHAVQKGAGLVVVNTDM-VASI 78
           PQ   +G ++DSR +   + F A+     P      F   A+  GA  V+  T++ VA+ 
Sbjct: 18  PQQPFHGFNLDSRKVEAGQIFIALTSYSQPE-KTRTFAEAALTNGALAVISETELGVANE 76

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              S     V   +G   K  +      K   IIA+TG+ GKTT   ++   +SS ++  
Sbjct: 77  WVCS----DVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLIAELISSQQQRC 132

Query: 138 ACIGSYNNHIGVPLT------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP------- 184
           A +G+  N I   LT      L  + +  +   +    +    +   +H +         
Sbjct: 133 AVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRLNGCD 192

Query: 185 -HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHAL 242
             IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+ K+  +  
Sbjct: 193 IEIAVYSNLSRDHLDYHGTLEAYAEAKARLFK-FNSLKVAVINLDDAHADLMIKSAKNNP 251

Query: 243 GIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N++  L 
Sbjct: 252 AQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENLIAAL- 310

Query: 302 IVSILTADVDTAIKALSVFHPKE-GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++   A  D  ++AL  F PK  G   R +   +     ++D ++  +     A I VL
Sbjct: 311 -IAAEQAGFD--LQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPD-----ALIQVL 362

Query: 361 SQISPHGEGRRIAVLG 376
             +  H   +  AV G
Sbjct: 363 KTLKRHVSNQLWAVFG 378


>gi|241765423|ref|ZP_04763393.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364828|gb|EER59801.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
          Length = 477

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 154/372 (41%), Gaps = 51/372 (13%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GK  TT+     +A + +  T+  IG   N  G    L       D+ + E  
Sbjct: 108 IAIAGTHGKTTTTSLVTSVLAEAGLDPTF-VIGGRLNSAGANAKLGSG----DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL  L  P +AV+T I   H+  +      +  A  +    +   GT  L  
Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMETYGHDFGRLKKAFVDFLHRMPFYGTAILCV 217

Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------ 280
           D  +  ++L + +       + S+G S++A  Q+R     +E   M   +Q ++      
Sbjct: 218 DSPAVRDILPSVT-----CPVTSYGFSEDA--QVRAINVRAEAGQMRFTVQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALN 335
           MEVV +  G H   N L  + +   L    +  ++AL+ F   +G G+R++      A  
Sbjct: 271 MEVVLNLAGEHNVLNALSAIAVAVELNIPDEAVLRALAGF---KGVGRRFQRYGDLPAKG 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FT+ID+ Y  +P  M A ++      P   GRR+ +             F  D  +V
Sbjct: 328 GGHFTVIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRYSRTRDCFE-DFVKV 382

Query: 396 LSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           +   +   ++ V+ +G   +   D  +L R++ V       + + +  +   I  +  DG
Sbjct: 383 IGSADAVLLTEVYAAGEAPVVAADGRSLARALRVAGRVEPVFVDNVADMVQVIADNAKDG 442

Query: 445 DVVVVKSSNSCG 456
           DVV+   + S G
Sbjct: 443 DVVMCMGAGSIG 454


>gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           MurE [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 481

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR    Q  FFA KG  +   DF+  A+ KG  + V   D       + IPV  
Sbjct: 36  DSLSYDSRQADEQTLFFA-KGATFKA-DFLKQAIAKGLKIYVSEIDY-----QVGIPVIL 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V+++  A++  A+A     + K  ++A TG+ GKTT
Sbjct: 89  VNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGKTT 124


>gi|146310301|ref|YP_001175375.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
 gi|167017282|sp|A4W6J4|MURC_ENT38 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145317177|gb|ABP59324.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  + Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVESYTQTGAQGHFTLAR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q K  + V  +  G H A N    + + +    + D  ++AL  F   +G G+R+
Sbjct: 277 QDKELLHVTLNAPGRHNALNAAAAVAVATEEGIEDDDILRALESF---QGTGRRF 328


>gi|114331393|ref|YP_747615.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
 gi|114308407|gb|ABI59650.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
          Length = 862

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 20/160 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI-GSYNNHIGVPLTLARMP----- 157
           ++  +IA+TG+ GKTTT  ++   L  + ++   AC  G + N+  V       P     
Sbjct: 467 ARIPVIAVTGTNGKTTTARLIANILEHNRMRVGIACTDGVFVNNQCVDTGDCSGPKSARN 526

Query: 158 ----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH---LSNFSGIEEIASAK 210
                DVD  + E      G +R         +AV+T I       L+N +  EE+A+ K
Sbjct: 527 ILFHPDVDAAVLETARG--GILREGLGFDYCDVAVVTNIGRGDHLGLANINTAEELAAVK 584

Query: 211 AEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I E +  + G   LN DD    +L   SH  G  T +S
Sbjct: 585 RTIVENVNPEKGVAVLNADDPL--VLGMASHCPGSVTFFS 622


>gi|331086157|ref|ZP_08335239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406316|gb|EGG85830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 24/188 (12%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +    IP++G         ++ +A R  S   ++AITG+ GKTTT  +L 
Sbjct: 79  VPTDLPLVNQLREREIPIWG---------EVELAYRFAS-GEVLAITGTNGKTTTTALLG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHI 186
             + + + +   +G    +IG P T A + +  D   + E+    L  I        P +
Sbjct: 129 EIMKAYRDSVFVVG----NIGTPYTGASLEMKEDSVTVAEMSSFQLETI----DTFHPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +EE   AK EI +   +     LNY+D   E+L+A    L  + 
Sbjct: 181 SAILNITPDHLNRHHTMEEYIQAKEEITKNQTEEDVCVLNYED---EVLRAFGEKLHTQV 237

Query: 247 IYSFGKSK 254
           +Y   + K
Sbjct: 238 LYFSSRRK 245


>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 435

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 126/315 (40%), Gaps = 39/315 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           IPV G+     A    A+A R    ++    ++ +TG+ GKT+  +++  AL ++ +   
Sbjct: 25  IPVKGL-----AAQLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCG 79

Query: 139 CIGSYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH--------- 185
            +G+        L   R     P+ V   + +L  +     R +   V  H         
Sbjct: 80  IVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAG---ARAVAMEVSSHGLDQGRAAA 136

Query: 186 ----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +AV+T ++  HL     +E  A+AKA++F   +    + +N DD F   L A    
Sbjct: 137 LAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPDLKCRV-INLDDDFGRELAAVKQE 195

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + T      +     +  K+     ++ + V  QG+   +    +G     N+L  +G
Sbjct: 196 SRLITYSQLDSTAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVG 253

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L   +D  +KAL       GR +R    L      L+   Y   P +++    VL 
Sbjct: 254 ALLGLDYALDEILKALPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLE 306

Query: 362 QISPHGEGRRIAVLG 376
            + PH +GR + + G
Sbjct: 307 ALRPHAKGRLLCLFG 321


>gi|254683377|ref|ZP_05147237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. CNEVA-9066]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSA 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
 gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 51/388 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            H L+  +  H   +VP+    +  I  DSR +     F  +KG   D HDF   A  +G
Sbjct: 3   LHTLVSCL--HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V    +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 61  AAAIVAERPI-----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T ++M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175

Query: 167 LGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           +  SH   LG +    H     +AV T +   HL     +EE   AK  +F  L      
Sbjct: 176 VS-SHALDLGRV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNH 230

Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +     LN DD+   E +++ +      T+ ++G    +D   +     S  +   +  
Sbjct: 231 NREKYAVLNNDDAVTAEYMRSTA-----ATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVT 285

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +S+ V    IG     N+L       +    ++T I  +       GR +       Q
Sbjct: 286 PYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVVDGG--Q 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS 364
            +  ++D  Y   P S++  +    Q +
Sbjct: 344 NYTVIVD--YAHTPDSLENVLKTAKQFA 369


>gi|229186153|ref|ZP_04313322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
 gi|228597329|gb|EEK54980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEDDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
 gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
          Length = 481

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR + P   FFA KG  +   +F+ +AV+ G    V   D       + IP   V 
Sbjct: 38  LSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVKAGLSFYVAEKDY-----QVGIPAIIVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A A     + K  ++A TG+ GKTT
Sbjct: 91  DIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTT 124


>gi|16763519|ref|NP_459134.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161612473|ref|YP_001586438.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990002|ref|ZP_02571102.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230408|ref|ZP_02655466.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234893|ref|ZP_02659951.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243456|ref|ZP_02668388.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168820877|ref|ZP_02832877.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450712|ref|YP_002044099.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470477|ref|ZP_03076461.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734645|ref|YP_002113147.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264975|ref|ZP_03165049.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200387518|ref|ZP_03214130.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927332|ref|ZP_03218534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|20532170|sp|Q8ZRU2|MURC_SALTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082496|sp|A9MZM0|MURC_SALPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620430|sp|B4TXH9|MURC_SALSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620433|sp|B4TJ88|MURC_SALHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16418629|gb|AAL19093.1| L-alanine adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161361837|gb|ABX65605.1| hypothetical protein SPAB_00163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409016|gb|ACF69235.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456841|gb|EDX45680.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710147|gb|ACF89368.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197243230|gb|EDY25850.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291894|gb|EDY31244.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604616|gb|EDZ03161.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323997|gb|EDZ09192.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205331420|gb|EDZ18184.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335054|gb|EDZ21818.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337526|gb|EDZ24290.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342532|gb|EDZ29296.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261245362|emb|CBG23151.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991807|gb|ACY86692.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156757|emb|CBW16232.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911098|dbj|BAJ35072.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084372|emb|CBY94165.1| UDP-N-acetylmuramate-alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222297|gb|EFX47369.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615950|gb|EFY12867.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620734|gb|EFY17594.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623914|gb|EFY20751.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627362|gb|EFY24153.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630669|gb|EFY27433.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638111|gb|EFY34812.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640597|gb|EFY37248.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647738|gb|EFY44223.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648087|gb|EFY44554.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656881|gb|EFY53167.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657409|gb|EFY53681.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663728|gb|EFY59928.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666561|gb|EFY62739.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672280|gb|EFY68392.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676408|gb|EFY72479.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679499|gb|EFY75544.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686172|gb|EFY82156.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323128449|gb|ADX15879.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195016|gb|EFZ80202.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200075|gb|EFZ85162.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201104|gb|EFZ86173.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209501|gb|EFZ94434.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212247|gb|EFZ97071.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216552|gb|EGA01278.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219901|gb|EGA04379.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225819|gb|EGA10039.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228639|gb|EGA12768.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236747|gb|EGA20823.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239752|gb|EGA23799.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242200|gb|EGA26229.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249376|gb|EGA33292.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252291|gb|EGA36142.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256619|gb|EGA40349.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262988|gb|EGA46538.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265473|gb|EGA48969.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271739|gb|EGA55157.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332987082|gb|AEF06065.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S++AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG   + V  +  G H A N    + + +      D  ++AL  F   +G G+R+
Sbjct: 277 QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIADDAILRALESF---QGTGRRF 328


>gi|332991941|gb|AEF01996.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas sp. SN2]
          Length = 482

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 151/367 (41%), Gaps = 45/367 (12%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+      A +    T+  IG   N  G    L R         + + 
Sbjct: 118 IAVAGTHGKTTTTSLISTIFAQAQYDPTF-VIGGLLNSAGTNARLGR-------SRYLIA 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++V+T I   H+  + G   ++     E    L   G   +  
Sbjct: 170 EADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFSKVKDTFVEFLSNLPFYGQAIVCG 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHH 286
           DD+  + +  +   +G ++I ++G   + D + +       + ++  ++ + + ++V  +
Sbjct: 228 DDANIQEISPR---IG-RSIITYGFEAHNDVRAQDITLSFGQANFTVIRPEREPLKVTLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L  + + +    D D  + AL+ F    G G+R+        + G  TL+
Sbjct: 284 LTGNHNVLNALAAIAVATDEGIDDDAIVTALASFG---GIGRRFEVLGDFKTSVGNVTLV 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGD--MCEMGELSQSF-----HIDLAEV 395
           D+ Y  +P  +KA I+      P  E R + V          +L + F      +D+  +
Sbjct: 341 DD-YGHHPTEVKATIAAARANWP--ESRLVMVYQPHRFTRTRDLYEDFVNVLSTVDVLLL 397

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
           L +Y  S   + G    A   +L RSI         Y    + L   + + LV+GD+V+ 
Sbjct: 398 LDVYPASEQPIEG----ADSKSLCRSIRQRGQIEPVYVGGKEALPAILANILVEGDIVMT 453

Query: 450 KSSNSCG 456
           + + + G
Sbjct: 454 QGAGNIG 460


>gi|163786568|ref|ZP_02181016.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
 gi|159878428|gb|EDP72484.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
          Length = 880

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 104/286 (36%), Gaps = 60/286 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV--------------PLTLAR 155
           IIA +G+ GKTTT  ++    + I K       Y    GV              P +   
Sbjct: 487 IIATSGTNGKTTTTRLI----AHIAKMKGYRVGYTTSDGVYIQNRLLMTGDCTGPASAEF 542

Query: 156 MPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
           +  D  V+F + E     L  +R      +  +AV+T +A  HL       IE++A  KA
Sbjct: 543 VLKDPTVNFAVLECARGGL--LRAGLGFKKCDVAVVTNVAADHLGLKGIHTIEQLAKVKA 600

Query: 212 EIFEGLEKTGTIFLNYDD--------------SFFEL------LKAKSHALGIKTIYSFG 251
            + E +   G   LN DD              + F +      +KA     GI  +Y  G
Sbjct: 601 VVPETVLPDGYAILNADDDLVYDMRRNVDCNVALFSMDENNPRVKALQRKGGITAVYENG 660

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                      W       W    ++  ++ + + G    M QN+L  +    +    ++
Sbjct: 661 -----------WVTICRGEWKMRIMEAVNIPLTYGGKAKFMIQNVLGAVLAAHVQGISIE 709

Query: 312 TAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPASMKA 355
               AL  F P   +  G+      N  F  L+D  Y  NPA M+A
Sbjct: 710 DMKAALETFIPSASQTPGRLNLFEFND-FSILLD--YAHNPAGMRA 752


>gi|94269090|ref|ZP_01291365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93451350|gb|EAT02218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT--LARMPVDVDFGIFE 166
           +IA+TG+ GK+T   ++   L +   KT+        ++GVPL   LA  P + D+ + E
Sbjct: 121 VIAVTGTNGKSTVTTLIGELLQAAGYKTF-----VGGNLGVPLAQYLAG-PQEADWVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP I V+  I+P HL  +   +  A++K  +F     T    LN
Sbjct: 175 VSSFQLDT----AGAFRPQIGVLLNISPDHLDRYPDYQAYAASKWRLFAHQRATDWAVLN 230

Query: 227 YDD 229
             D
Sbjct: 231 GAD 233


>gi|85707767|ref|ZP_01038833.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689301|gb|EAQ29304.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
          Length = 478

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 141/370 (38%), Gaps = 37/370 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158
           +A  +R K+T+ A+ G+ GKTTT  M+   L   +     I G      G   + ARM  
Sbjct: 101 LAELMRLKSTV-AVAGTHGKTTTTSMIASLLDCGEIDPTVINGGIIEQYG---SNARMG- 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D D+ + E   S    +R         IAV+T I P HL ++   + +  A  E    + 
Sbjct: 156 DSDWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGDFDGVKKAFVEFIHNVP 210

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-- 276
             G   L  D    + +         + + ++G S  AD      +     +  +V +  
Sbjct: 211 FYGAAILCVDHPEVQAVIGDVRD---RKVVTYGFSLQADICGVNVRPTESGNTFDVIVRQ 267

Query: 277 ---QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331
              + + +E VH  + G H  QN L  + +   +    +T       F     R  K   
Sbjct: 268 RGEEDRRIEGVHLPMPGRHNVQNALAAIAVAIEMGCSDETICNGFGSFSGVRRRFTKVGT 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAV--------LGDMCEM 381
                G  T+ID+ Y  +P  ++A +    + +     EGR IAV        L D+  M
Sbjct: 328 VPFPTGHATIIDD-YAHHPVEIRAVLGAAREATEAAGVEGRVIAVMQPHRYTRLNDL--M 384

Query: 382 GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQ 438
            +    F+  D+  +  +Y      + G +  +L   L    H     T   D L   + 
Sbjct: 385 DDFQNCFNEADMVFITPVYEAGEDPIEGVNSESLVTGLKSRGHRSAQTTPDHDDLAATLA 444

Query: 439 SSLVDGDVVV 448
             L +GD+VV
Sbjct: 445 EELREGDMVV 454


>gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
 gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
          Length = 464

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 131/364 (35%), Gaps = 43/364 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I+P   F AI G  +D H  +   +  G     +    V    +L +P     
Sbjct: 24  LSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGKIAGALCQHPVDGPNTLVLP----- 78

Query: 90  DVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+      +AVAA     A   ++ +TG+ GK++T   L     ++    A IG+    I
Sbjct: 79  DLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQALGHRTATIGTLGYAI 138

Query: 148 --GVPLTLAR-MPVDVDFG-IFELGMSHLGEIRFL---THL--------VRPHIAVITTI 192
             G    LA   P       I  L + H  E  F+   +H         +R H A+ T +
Sbjct: 139 DGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIALGRVQGIRFHGAIFTNL 198

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL     +++    K  +F        I           L           + SFG 
Sbjct: 199 TPDHLDFHGTMDDYLQTKLRLFTPAPPYAIIHTRRIPRKLPPLPG---------VLSFGP 249

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            ++AD    + +   E   +   LQG+       G G    +N+            +   
Sbjct: 250 GEDADIPTTEQQVSPE--GIRFCLQGQIYRSPLRGRGN--LENVQAVAAFCHHEGQERQQ 305

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             +A++   P EG   R+    + G   +ID  Y   P +++  +    +I     GR I
Sbjct: 306 VARAIAALRPIEG---RFMPISHNGRHGIID--YAHTPDALEQLLKSTREIC---HGRLI 357

Query: 373 AVLG 376
            V G
Sbjct: 358 VVFG 361


>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
 gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 43/310 (13%)

Query: 17  HSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H   +VP+    +  I  DSR +     F  +KG   D H+F   A  +GA  +V    +
Sbjct: 11  HDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQAAAQGAAAIVAERPI 70

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +
Sbjct: 71  -----DVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRA 125

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LG 173
                  IG+ N  IG               +  T ++M    VD  + E+  SH   LG
Sbjct: 126 HGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVS-SHALDLG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNY 227
            +    H     +AV T +   HL     +EE   AK  +F  L       +     LN 
Sbjct: 185 RV----HGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   E     + A    T+ ++G   ++D   +     S  +   +    +S++V    
Sbjct: 241 DDPVTEEYMRSTAA----TVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKL 296

Query: 288 IGYHMAQNML 297
           IG     N+L
Sbjct: 297 IGKFNVYNVL 306


>gi|313205463|ref|YP_004044120.1| mur ligase middle domain protein [Paludibacter propionicigenes WB4]
 gi|312444779|gb|ADQ81135.1| Mur ligase middle domain protein [Paludibacter propionicigenes WB4]
          Length = 456

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK--KTY---ACIGSYNNHIGVPLTLARMPVD 159
           RSK  I+ + GS GKTTT  ++      ++    Y   A I  ++N       + R+  +
Sbjct: 103 RSKTRIV-VGGSHGKTTTTAIILFVQKQLRIDTDYMVGAQIDGFDN-------MVRLSYE 154

Query: 160 VDFGIFELGMSHLG---EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               +FE G  +L    + R   HL +PHIAV+T IA  H++ F   E+      +  + 
Sbjct: 155 SRIAVFE-GDEYLTSPIDPRPKFHLYKPHIAVLTGIAWDHINVFPTFEKYVEQFRKFVDL 213

Query: 217 LEKTGTIFLNYDDS 230
           +E  G +    DD 
Sbjct: 214 MEVQGRLVYFEDDK 227


>gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 481

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR    Q  FFA KG  +   DF+  A+ KG  + V   D       + IPV  
Sbjct: 36  DSLSYDSRQADEQTLFFA-KGATFKA-DFLKQAIAKGLKIYVSEIDY-----QVGIPVIL 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V+++  A++  A+A     + K  ++A TG+ GKTT
Sbjct: 89  VNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGKTT 124


>gi|169334623|ref|ZP_02861816.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259340|gb|EDS73306.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
           17244]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-- 235
           L    +P IA++T I P HL   S  EE    K  +F   ++   + +N +D     L  
Sbjct: 176 LNDKFKPDIAIMTNITPDHLERHSTFEEYVRVKGNVFVNQDENDYLIVNKEDKILTGLSE 235

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLR 261
            AKS  L     ++  + KNA+  L+
Sbjct: 236 NAKSKVL----TFTVKEDKNANAYLK 257


>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS185]
 gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS185]
          Length = 439

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 39/262 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITGS GK+T    +T  +  + +      +   +IGVP  L  +  + D  + E
Sbjct: 108 KPCVIGITGSNGKST----VTTLVGEMAREAGIAVAVGGNIGVP-ALDLLHENADLFVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A    I+  H+  +S I     AK  ++   +++  +  N
Sbjct: 163 LSSFQLET----THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFN 215

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
            DD      E +   S  L       +G S +     + +   SE     EV L      
Sbjct: 216 RDDKLTVPPEPMNQNSFGLAAPEADEWGISDS-----KIYHGSSEIMPITEVSL------ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT 340
                IG H   N+L  + +V ++  D     K    F      G  +RC +   +   T
Sbjct: 265 -----IGSHNHANLLAAMALVDVVGVDKQIMAKVARSF-----TGLSHRCEVVGIKNGVT 314

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            +++S   N  +  AA+  LS 
Sbjct: 315 YVNDSKATNVGATVAALDGLSD 336


>gi|83949453|ref|ZP_00958186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
 gi|83837352|gb|EAP76648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
          Length = 466

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   LS   +     G    +IG  +     P D    + EL  
Sbjct: 122 VVAVTGSNGKSTTSALIHHVLSEAGRASQLAG----NIGRGVLDIDPPEDGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 178 YQTELARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218


>gi|71900694|ref|ZP_00682817.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71729515|gb|EAO31623.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 439

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLIAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGAGQWLVV 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   HL N+ +    I  A  E  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCL 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + ++G    AD +     Q   + +  + L +GK + V   
Sbjct: 228 DDPEVAELAGKAR----RHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKVIPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N L    +   L    +   +AL  F    G G+R+      A+  G    +
Sbjct: 284 LPGRHNVLNALAASAVGWQLGVPPEVIGRALKSF---VGIGRRFNDLGDVAIGNGACVRL 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 IDDYGHHPRELEA 353


>gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
 gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
          Length = 487

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 22/222 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPV 85
           IDSR +     F A+ G   DG  ++  A  KGA   +V+TD     G +S      I  
Sbjct: 25  IDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALVHTDDPDEHGKVSYEPGLCIAF 84

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F ++  + A+ +    A  R K  ++ +TG+ GKT+  +++      +    A +G+  N
Sbjct: 85  FQLNRQVSAVAR-QYYALTRGKLRVVGVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGN 143

Query: 146 HIGVPL------TLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHIAVITT 191
            +   L      T   + V  D   FE        + +S  G ++     V   +AV T 
Sbjct: 144 GLWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTN 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           ++  HL     ++  A+AK  +F          +N DD   E
Sbjct: 204 LSRDHLDYHGDMDNYAAAKRRLF-AFGSLSARVINLDDKVGE 244


>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Yersinia enterocolitica W22703]
          Length = 298

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S+ 
Sbjct: 18 PERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMV 77

Query: 82 ---SIPVFGVDDVLGALNKLA 99
              +PV  + ++   L+KLA
Sbjct: 78 EMHGVPVIYLRNLNQHLSKLA 98


>gi|225166180|ref|ZP_03727897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Opitutaceae bacterium TAV2]
 gi|224799574|gb|EEG18086.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Opitutaceae bacterium TAV2]
          Length = 207

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           + YNANPASM  A+   +  +   +  R+ ++G M E+G  S   H DL   L+
Sbjct: 67  DCYNANPASMLDALETFAATATPPDAPRLYIIGCMEELGPESARHHADLGRALA 120


>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Yersinia enterocolitica subsp. palearctica
          105.5R(r)]
 gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Yersinia enterocolitica subsp. palearctica
          105.5R(r)]
          Length = 495

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S+ 
Sbjct: 18 PERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMV 77

Query: 82 ---SIPVFGVDDVLGALNKLA 99
              +PV  + ++   L+KLA
Sbjct: 78 EMHGVPVIYLRNLNQHLSKLA 98


>gi|228922665|ref|ZP_04085965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837094|gb|EEM82435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  +++   +++ G K ++S  K 
Sbjct: 222 INADDA--DVMALSAYSKGQKILFSTTKE 248


>gi|170016886|ref|YP_001727805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
 gi|226711918|sp|B1MXV9|MURD_LEUCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169803743|gb|ACA82361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
          Length = 449

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELG 168
           +IA+TGS GKTTT  ++   L +  +T    G    +IG P++    P+   D  + EL 
Sbjct: 113 LIAVTGSNGKTTTTSLIRDMLKASGQTVTTAG----NIGTPVSEVVGPLTSQDTLLLELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +      ++P IA+IT I   HL          +AK +I +       + LN D
Sbjct: 169 SFQLMGLPD----IKPDIALITNIFANHLDYHGDRAHYVAAKYQITKNQTANQKLILNAD 224

Query: 229 DSFFELLKAKSHA 241
            +      AK+ A
Sbjct: 225 GADTPDFAAKTQA 237


>gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
 gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
          Length = 501

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 78/220 (35%), Gaps = 25/220 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   + F A  G   DG  ++  A+  GA   +V        G     V    
Sbjct: 23  LRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVELQGFEPRGPDDERVAAYA 82

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +  A   +A A          + A+TG+ GKT+T   L  AL  + +    +G+    I
Sbjct: 83  GLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRKCGVVGTLG--I 140

Query: 148 GVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           G P  +                 R  VD  F    L  S +G +          +A+ T 
Sbjct: 141 GAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCALEASSIGLVERRLDATTIQVAIFTN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD 229
               HL     +++   AK  +F   GL+      +N DD
Sbjct: 201 FTQDHLDYHPSMQDYWEAKKMLFSWPGLKAA---VINVDD 237


>gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 496

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S+ 
Sbjct: 18 PERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMV 77

Query: 82 ---SIPVFGVDDVLGALNKLA 99
              +PV  + ++   L+KLA
Sbjct: 78 EMHGVPVIYLRNLNQHLSKLA 98


>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
 gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
          Length = 454

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 146 HIGVPLTLARMPVDVD-FGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           +IGVPL      +D + + + EL    L G +RF     RPHI  I  I PAHL    G+
Sbjct: 145 NIGVPLCDVVEAIDSEEWLVAELSSFQLQGTLRF-----RPHIGAILNIYPAHLDYHGGL 199

Query: 204 EEIASAKAEIF 214
           E  A+AK  +F
Sbjct: 200 EAYAAAKKNMF 210


>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
 gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
          Length = 436

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 39/269 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
           +N + + ARL  K  + A+TGS GK+T   ML  A  ++  KT  C      +IG  +  
Sbjct: 89  MNDVELFARLIEKP-VAAVTGSNGKSTVVTMLADAARAVGLKTQLC-----GNIGKSVLT 142

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A +  + +  ++ L +S     R  + ++   + V+  + P HL  +    +  +AK+ +
Sbjct: 143 AWLEDEEEPDLYVLELSSYQLERCPSLMI--DVGVVLNVTPDHLDRYDSFLDYVAAKSHL 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWM 272
               ++T    LN DD +   +   S     +T++ FG             QC  +    
Sbjct: 201 ---AQQTQLTILNGDDEYCRQMAPLSR----QTVF-FG------------AQCVNRVENG 240

Query: 273 EVQLQGKSM----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            + + G+++    E+  H  G H A N L+ L + S L  D+   ++AL  F     R  
Sbjct: 241 AIIVNGQTVLTADELKIH--GQHNAYNALVALLMASGLGIDISYTLEALKNFRGLPHRMC 298

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAI 357
              C  N   +  +++S   N AS  AA+
Sbjct: 299 EVAC-FNDVLW--LNDSKATNIASTAAAL 324


>gi|296394963|ref|YP_003659847.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
 gi|296182110|gb|ADG99016.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
          Length = 475

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 19/234 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           L +  V A L   +T + ++G+ GKTTT  +   AL  + +  ++A  G     +G   T
Sbjct: 96  LYRPQVLAALMEGSTRVLVSGTHGKTTTTSLTVAALQQAGLDPSFAVGG----ELGEAGT 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            A       F + E   S    +R+     +P  AV+T +   HL +F   E   +   +
Sbjct: 152 NAHQGSGNAF-VAEADESDGSLLRY-----QPDAAVVTNVEADHLDHFGSSEAYVAVFDQ 205

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCS 267
               +   G++ ++ DD     L +++ A G + +  +G ++         +L  W    
Sbjct: 206 FVRQIAPGGSLIVDVDDPGAAALGSRAAAAGTR-VLGYGSNQAPAGVLLAARLADWSPHG 264

Query: 268 EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           E + + V  +     V   G+ G HMA+N L  +       A +D AI  +S F
Sbjct: 265 EGARLTVVFEPGGERVFSIGVPGRHMARNALGAVLAAVFAGASLDGAISGVSAF 318


>gi|307244053|ref|ZP_07526172.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492577|gb|EFM64611.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 453

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 121/293 (41%), Gaps = 37/293 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA+ G+ GKT+T  +L+      +     +        V   L+ +  +V  G
Sbjct: 98  MREYRNSIAVAGTHGKTSTTSILSTIFDYAQTDPTVL--------VGGNLSTIGGNVRIG 149

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +  ++   E    FL+    P I ++  I   HL  FSG++EI ++  +  + L ++G
Sbjct: 150 NSKHFITEACEYVDSFLS--FNPLIGIVLNIEEDHLDYFSGLDEIKASFNKFGKLLPQSG 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGK 279
              +N D+   + +     A     I  FG++ + D  +   +   E  +    ++ +G 
Sbjct: 208 YFIINGDNENTKDIVYDVRA----NIIRFGQNPDNDAIISDIRY-DENGYAIFNLKYKGV 262

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           ++   H  + G H   N    +    +   DVDT  K++  +H   G G+R+     +G+
Sbjct: 263 NLGGFHLSVYGLHNIYNATAAILAAIVSDIDVDTIRKSVLEYH---GVGRRFE---KKGY 316

Query: 339 FT--LIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCE 380
           +   L+ + Y  +P  +KA ++    +          PH   R  ++  +  E
Sbjct: 317 YNDALVIDDYAHHPTEIKATLAAAKNLRDKKLWVAFQPHTYSRTKSLFKEFSE 369


>gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
 gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
          Length = 481

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 11/117 (9%)

Query: 9   DLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL + I  QGH          + I  DSR  A   + F +KG  +   +F+L A++ G  
Sbjct: 15  DLFREIIDQGHYHYNFNDVTFDSICYDSRK-AKDNSLFFVKGAAF-KKEFLLSAIEHGLS 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
             V   D       + IPV  V+D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 73  WYVAEQDY-----EVDIPVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|320352820|ref|YP_004194159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121322|gb|ADW16868.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 19/208 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L +LA+AA  +    +IA+TGS GKTT   ++   L +  K     G    +IG PL
Sbjct: 95  LPVLGELALAAG-QYAVPVIAVTGSNGKTTVTSLIGELLRASGKNPFVGG----NIGTPL 149

Query: 152 -TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                 P   D  + EL    L     L    RP I ++  I+P HL     +E    AK
Sbjct: 150 LDYFADPQGYDAVVLELSSFQLD----LAGAFRPDIGLLLNISPDHLDRHGSLEAYTLAK 205

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQ 269
             +F   +      L  DD       A +  L  +   ++FG+++    ++   +     
Sbjct: 206 QNLFRHQQLGDRAILGADDPV-----AAATPLNPEVGRFTFGRAEGCTARIADGRIL--L 258

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + M   L GK+ E V  G   H + N L
Sbjct: 259 TLMAGALSGKT-EYVLSGTTLHSSVNQL 285


>gi|206971160|ref|ZP_03232111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218232675|ref|YP_002368712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus B4264]
 gi|228954189|ref|ZP_04116217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071412|ref|ZP_04204634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|229081165|ref|ZP_04213675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|229152110|ref|ZP_04280305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|229180188|ref|ZP_04307532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|226711881|sp|B7H6P8|MURD_BACC4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206733932|gb|EDZ51103.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218160632|gb|ACK60624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           B4264]
 gi|228603397|gb|EEK60874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|228631459|gb|EEK88093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|228702209|gb|EEL54685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|228711703|gb|EEL63656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|228805509|gb|EEM52100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 450

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  +++   +++ G K ++S  K 
Sbjct: 222 INADDA--DVMALSAYSKGQKILFSTTKE 248


>gi|30022001|ref|NP_833632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 14579]
 gi|228960130|ref|ZP_04121794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229129190|ref|ZP_04258163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|229146484|ref|ZP_04274855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|60390083|sp|Q819Q2|MURD_BACCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29897557|gb|AAP10833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 14579]
 gi|228637117|gb|EEK93576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|228654427|gb|EEL10292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|228799646|gb|EEM46599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 450

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  +++   +++ G K ++S  K 
Sbjct: 222 INADDA--DVMALSAYSKGQKILFSTTKE 248


>gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
 gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
          Length = 503

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 17  HSIGIVPQGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           HS  +   G    +++  DSR +A  + F A+ G   DG DFI  A++ G   V+ + + 
Sbjct: 19  HSAALEALGLTGDVALHLDSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLAHAEP 78

Query: 75  --VASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTT 121
              AS  +  I + G+   LG L +    V A L     +I +TG+ GK++
Sbjct: 79  GGSASADARVIHLEGLAGQLGELGRSLFEVPASLE----LIGVTGTNGKSS 125


>gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
 gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
          Length = 467

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L+S  +     G    +IG  +     P D    + EL  
Sbjct: 122 VVAVTGSNGKSTTSALIHHILTSSGRDSQLAG----NIGRGVLDIDPPGDGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218


>gi|302876578|ref|YP_003845211.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307687253|ref|ZP_07629699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302579435|gb|ADL53447.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELG 168
           I AITGS GKTTT    T  +  I KT         +IG PL T      + D  + EL 
Sbjct: 119 IFAITGSDGKTTT----TTLVYEILKTEGYNTWVGGNIGTPLFTKIEEIKNTDKVVLELS 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     +T  +   ++ +T ++P HL     + E   AK  IF+   +   + LN +
Sbjct: 175 SFQL-----MTIQLPIEVSAVTNLSPNHLDMHKSMNEYIEAKENIFKFQRENDLLVLNIE 229

Query: 229 DSFFELLKAKSHA 241
           +     +K K+++
Sbjct: 230 NDITYNMKDKANS 242


>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
 gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
          Length = 544

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 151/374 (40%), Gaps = 36/374 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V+G++ DS ++ P +   A+ G H  G  F   AV  GA  V+ + +    I ++    
Sbjct: 69  IVHGVTHDSHAVRPGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTDAEGARRIAAMPPGP 128

Query: 86  FGVDDVL---GALNKLA-VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTY 137
            G   VL        LA VAAR+    +    ++ +TG+ GKTTT  +L   L +   T 
Sbjct: 129 PGEVPVLVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRAAGHTT 188

Query: 138 ACIGSYNNHIGVP-LTLAR-MPVDVDFGIFELGMSHLG----EIRFLTHLVRPHI----- 186
             IG+    I    L  AR  P   D       M   G     +   +H +  H      
Sbjct: 189 GLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADALH 248

Query: 187 ---AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T ++  HL   S +E+  +AKA +F+   +T    +   D +   L A+ H   
Sbjct: 249 FAGAVFTNLSQDHLDFHSSMEDYFAAKASLFD-PARTAVAVIGVADRWGRRL-AERHPGA 306

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +F     AD+  R        + +  + +G     V   +    A N+  TLG +
Sbjct: 307 I----TFAVEGPADWTARDVSYGPTGTLL--RAEGPDGLRVDLSVPLPGAFNVANTLGAL 360

Query: 304 SILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           ++L A  V  A  A  +       G+  R    Q F  L+D ++  +     A  ++L  
Sbjct: 361 ALLVAIGVPPATAAAGIGSLPGVPGRMERVDAGQPFLALVDFAHTPD-----AVTTLLET 415

Query: 363 ISPHGEGRRIAVLG 376
           + P  +GR I VLG
Sbjct: 416 VRPLVKGRVIVVLG 429


>gi|254476425|ref|ZP_05089811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
 gi|214030668|gb|EEB71503.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
          Length = 468

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 23/131 (17%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD----FGIF 165
           I+A+TGS GK+TT  +L   L    +     G+          + R  +D+D     G+ 
Sbjct: 122 IVAVTGSNGKSTTVALLHHILQEAGRESQLAGN----------IGRGVLDIDPPGSGGVV 171

Query: 166 ELGMSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG 221
            L +S      + T L R   P +AV T ++P HL   +G+    +AK  +F EG     
Sbjct: 172 VLELSS-----YQTDLARALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRA 226

Query: 222 TIFLNYDDSFF 232
            I ++ D+  +
Sbjct: 227 IIGVDEDEGLY 237


>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 20/173 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   + 
Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N  D+    L A +        +SF  +K  DF+     +   Q W+  Q  
Sbjct: 214 VNRADALTRPLIADT-----VPCWSFDLNK-PDFKAFGLIEEDGQKWLAFQFD 260


>gi|253581421|ref|ZP_04858647.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           varium ATCC 27725]
 gi|251836785|gb|EES65319.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           varium ATCC 27725]
          Length = 435

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 33/263 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV-DVDFGI 164
           K+ IIA+TG+ GKTTT   +T  L      YA     Y  +IGV      +   D+D+ +
Sbjct: 90  KSKIIAVTGTNGKTTTTSKITELLQ-----YAGFKAEYAGNIGVSFAEVLLKYKDLDYIV 144

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P I ++  + P HLS +   E+    K  I +   +     
Sbjct: 145 LELSSYQLENLLDF----KPWITMVINLTPDHLSRYKDTEDYYKTKFNIGKNQTEKDYFI 200

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEV 283
            N D    E+++ +    G K   S   +K  DF            W+E  +L GK  E+
Sbjct: 201 FNLDSK--EVVEREKFIFGKKIKISQNITKECDF------------WVENGKLYGKDGEI 246

Query: 284 VHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  G     G H  +N+L  +    I+    +   + L      E R + +    N G  
Sbjct: 247 LECGKLSLKGKHNLENILFIVATAKIIGIQNEKIREFLYNTGTIEHRMEDF---FNYGKI 303

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
             I++S   N  S K A+    Q
Sbjct: 304 KFINDSKGTNIDSTKFAVEAFDQ 326


>gi|322378367|ref|ZP_08052823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
           suis HS1]
 gi|321149224|gb|EFX43668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
           suis HS1]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFG 163
            TII I+G+ GKTTT  ML + L   K + A +G    +IG+PL    T  +        
Sbjct: 98  PTIIFISGTNGKTTTARMLGLLL---KSSNAQVGG---NIGIPLIDLYTQIKAEQRKPPY 151

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           ++ L  S    + +  HLV P I ++  ++  HLS     E    AK +    +++ G +
Sbjct: 152 VWILETSSF-TLHYTNHLV-PQIYILLPLSQDHLSWHENHENYVEAKLKPLSFMQQEGHV 209

Query: 224 FLN 226
           FL+
Sbjct: 210 FLH 212


>gi|203284712|ref|YP_002222452.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|203284717|ref|YP_002222457.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084155|gb|ACH93746.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084160|gb|ACH93751.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
          Length = 486

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 23/188 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYA 138
            L IPV    +V+G ++K         K   I + GS GKTTT   L I   S+  +   
Sbjct: 113 ELGIPVLSYPEVIGEISK---------KYYSIGVAGSHGKTTTAAFLGILFHSLGLQPNL 163

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAH 196
            +GS   ++    +L         G   + ++   E +  FL+    P I V+T I   H
Sbjct: 164 ILGSSVKNLEDKSSLV--------GESNVFIAETCEYKGHFLS--FSPDIIVLTNIDYEH 213

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   EE+     +    L+K G + +N D+S    +K K     I+ ++S G +  +
Sbjct: 214 VDFFKNYEEVEDIFLQYVNNLKKNGILIINADESNLFNIKNKIIRKDIR-VFSVGFNSLS 272

Query: 257 DFQLRKWK 264
           DF++  ++
Sbjct: 273 DFKIEHFE 280


>gi|71734389|ref|YP_276232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|118595674|sp|Q48EF6|MURD_PSE14 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71554942|gb|AAZ34153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322452|gb|EFW78545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330079|gb|EFW86066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330874996|gb|EGH09145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|255656631|ref|ZP_05402040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-23m63]
 gi|296449914|ref|ZP_06891678.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296878295|ref|ZP_06902304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
 gi|296261184|gb|EFH08015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296430743|gb|EFH16581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
          Length = 451

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 13/177 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP ++ I  I   HL+    +E+   AK  IF          LNYDD   + L  K +A 
Sbjct: 177 RPKVSAILNITEDHLNRHHTMEKYIEAKTNIFMNQTSEDFCVLNYDDEIVKGLADKCNA- 235

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             K IY F ++K  N    L       +       L    + +     G H  +N +  +
Sbjct: 236 --KVIY-FSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVSLP----GGHNLENCMAAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            I  +   D++     L  F   E R +  R   N      +++S   NP S   AI
Sbjct: 289 AIAYVCKIDLEVIKDVLMTFKGVEHRQEFVR---NLDNVIYVNDSKGTNPDSTIKAI 342


>gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAIAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|160878268|ref|YP_001557236.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
 gi|189029008|sp|A9KQI8|MURC_CLOPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160426934|gb|ABX40497.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
          Length = 469

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 39/300 (13%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +IP+    D LG +        +      I ++G+ GKTTT  M+++ +          G
Sbjct: 93  NIPMLDRADFLGQV--------MLQYKNAIGVSGTHGKTTTTSMVSLMMLE--------G 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSN 199
           +++  I V   L  +  ++  G  E  +    E +  FL+    P  A+I  I   HL  
Sbjct: 137 NFDPTISVGGILDNIEGNIRIGHSENFIVESCEYKNSFLS--FNPAHAIILNIEAEHLDF 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           F  IE+I ++     + L   G + +    D + EL++  S  +    ++S  + +  + 
Sbjct: 195 FKDIEDIRTSFHTFAKKLPDYGNLVVWGGIDRYEELIEDLSCNVITYGMFSSEEEREQNK 254

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTA 308
               +  C+  S        +S ++  HG          IG H   N L  + +V  L  
Sbjct: 255 DRYDYAACNVTS---DDFGLRSYDLYKHGKFVDRINLAVIGDHNVLNSLAAISLVDTLGG 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    KAL  +   E R +R +  LN    T++D+ Y  +P+ +KA + + +   PH +
Sbjct: 312 TMSAIKKALLAYKGTERRFER-KGVLNG--ITIVDD-YAHHPSEIKATL-IAAASYPHKD 366


>gi|322380110|ref|ZP_08054363.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
           suis HS5]
 gi|321147457|gb|EFX42104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
           suis HS5]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFG 163
            TII I+G+ GKTTT  ML + L   K + A +G    +IG+PL    T  +        
Sbjct: 98  PTIIFISGTNGKTTTARMLGLLL---KSSNAQVGG---NIGIPLIDLYTQIKAEQRKPPY 151

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           ++ L  S    + +  HLV P I ++  ++  HLS     E    AK +    +++ G +
Sbjct: 152 VWILETSSF-TLHYTNHLV-PQIYILLPLSQDHLSWHENHENYVEAKLKPLSFMQQEGHV 209

Query: 224 FLN 226
           FL+
Sbjct: 210 FLH 212


>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  DV+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDDVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  ++G+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +         ++FG +K  DF     ++ + + ++  Q +
Sbjct: 215 NRQDALSRPLIGEG-----LPCWTFGLNK-PDFHGFGLREENSEKYLAFQFE 260


>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
 gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
          Length = 494

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 146/379 (38%), Gaps = 56/379 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR++     F A+ G   DGHD++  AV+ GA  V+V+  +  S     + V  V+
Sbjct: 27  VTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSKPIEIS---SDVCVITVE 83

Query: 90  DVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           D   A+  +A          +   +I +TG+ GKTTT  M+   L +       IG+ + 
Sbjct: 84  DTRAAM--MACVPYFFDYPANSMRMIGVTGTNGKTTTTHMIRHILRAQGHKVGVIGTVHI 141

Query: 146 HIG---VPLTLARMPVDVDFG-----IFELGMSH-----------LGEIRFLTHLVRPHI 186
            IG    P+     P  VD       + E G++H           LG +  + +      
Sbjct: 142 MIGDTSYPIH-NTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY----DT 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKAKSH 240
           AV T +   HL      E   +AK ++FE + K+  +       +N DD++ + +  K+ 
Sbjct: 197 AVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKGAVINIDDAYGQRVVEKTT 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I ++    +            + S   V   G    V  +  G     N L  +
Sbjct: 257 A----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312

Query: 301 G---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           G   +  I   D+D A+K  S        G+       Q F  ++D  Y   P  ++  +
Sbjct: 313 GACLLEGISMEDIDKALKTFSAV-----PGRFELIEEGQPFAVVVD--YAHTPDGLENIL 365

Query: 358 SVLSQISPHGEGRRIAVLG 376
                I    E R I V G
Sbjct: 366 QTAKAIQ---ENRIIVVFG 381


>gi|239917863|ref|YP_002957421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
 gi|239839070|gb|ACS30867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 531

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLA-RMPVDVDF 162
           R  A  + +TG+ GKTTT  M+   L +  ++  AC      ++G P+  A R P   D 
Sbjct: 148 RKTADWVCLTGTNGKTTTVTMVEAILRADGRRAVAC-----GNVGTPVLDAIRDPQGFDV 202

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
              EL    L      TH + P  + +  +A  H+     +EE A+AK +++
Sbjct: 203 LALELSSFQL----HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVY 250


>gi|196045927|ref|ZP_03113156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
 gi|196023367|gb|EDX62045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
          Length = 450

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 23/259 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD   +++   +++ G K ++S  K         +   C + + +  + + K +EV 
Sbjct: 222 INADD--VDVMALSAYSKGQKVLFSTTKE-------IEDGACIKDNALYFKAE-KVVEVD 271

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              + G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   +
Sbjct: 272 DIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY---N 328

Query: 344 ESYNANPASMKAAISVLSQ 362
           +S   N  + + A+S  +Q
Sbjct: 329 DSKATNMLATEKALSAFTQ 347


>gi|34763166|ref|ZP_00144133.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887164|gb|EAA24268.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 468

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 127/328 (38%), Gaps = 40/328 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KG   V+ +T +  +   LS   +  ++ +  L +  + A+L ++ T 
Sbjct: 58  YNEHD---EENVKGVDYVIASTAIKETNPELS---YAKNNGITLLKRGELLAKLLNRETG 111

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  + S   T    G           L  +  +   G  E  ++
Sbjct: 112 IAIAGTHGKTTTSSMLSAVMLSKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              E       + P  AVIT I   HL     ++ I  +  E     +K   I +   N 
Sbjct: 162 EADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFISHTQKEAIICMDCENL 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++   L K KS        YS  K +NA    +  +    ++  E+ +  + +      
Sbjct: 222 KEAITRLPKGKS-----VITYSI-KDENASIFAKNIRITDRKTIFELYINKELIGEFSLN 275

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF---- 338
           I G H  QN L  + +        +   +AL+ F   +G  +RY       L  G+    
Sbjct: 276 IPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKF---KGSKRRYDVLFDKELENGYGNKT 332

Query: 339 --FTLIDESYNANPASMKAAISVLSQIS 364
               +ID+ Y  +P  +KA +  +  I 
Sbjct: 333 KKVRIIDD-YAHHPTEIKATLKAIKSID 359


>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 456

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 13/181 (7%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L  I+      RP  A++  I P HL+    +E   +AK  IFE   K+ 
Sbjct: 159 FLVAELSSYQLETIKHF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLKSD 214

Query: 222 TIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            + LN DD     +  +A SH L I    +    +N  +         +       +  K
Sbjct: 215 YLVLNIDDPIVADMEHRAPSHILQISQKQTV---ENGAYYANGQCYVVKNGVATAVIGDK 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +    H  G H  +N+L  + +   L   V    + +S FH  E R +R +      F+
Sbjct: 272 DI----HIPGSHNIENILTVIALTYALGVPVVEIHRIISEFHGVEHRLERVKTIDGITFY 327

Query: 340 T 340
            
Sbjct: 328 N 328


>gi|308185660|ref|YP_003929791.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
 gi|308056170|gb|ADO08342.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
          Length = 492

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 130/332 (39%), Gaps = 68/332 (20%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDVVIRDLIPR---VG-RHITTYGFSDDADLRIENYEQSGAQGHFTLIR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
           Q K+ +++  +  G H A N    + + S    + +  + AL  F   +G G+R+     
Sbjct: 277 QDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDNAILAALESF---QGTGRRFDLLGE 333

Query: 333 ----ALN--QGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLG 376
                +N   G   L+D+ Y  +P  + A I                 PH   R   +  
Sbjct: 334 FPTEPVNGQPGTAMLVDD-YGHHPTEVDATIKAARAGWPDKKLVMVFQPHRYSRTRDLFD 392

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           D   +  LS   H+D+  +L +Y+     + G
Sbjct: 393 DFANV--LS---HVDVLLMLDVYSAGETAIPG 419


>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
 gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
          Length = 492

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 23/226 (10%)

Query: 81  LSIPV--FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTY 137
           LS P+  + +D  +  +++L +AA    KA  I A+TG+ GK+T    +T     I +  
Sbjct: 97  LSEPILAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKST----VTTFTGQILQQA 152

Query: 138 ACIGSYNNHIGVPLTLA-----RMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   ++G P + A     + P D       + E+    L     L     P + VI
Sbjct: 153 GVRTFIGGNLGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLE----LPGSFSPSVGVI 208

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++P HL     +E     K  +FE ++ +    + + D F   +  K ++   K    
Sbjct: 209 LNLSPDHLERHKSMENYGETKCRLFERMDSSKLSIIPHADEFLRKVAYKYNSGSTKAWLG 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  D Q R+       +  E +L    ++ V    G H AQN
Sbjct: 269 ALPGIQLDSQARRAVVVVPTTKAEARLYLSGLKAV----GSHNAQN 310


>gi|309812672|ref|ZP_07706416.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
 gi|308433367|gb|EFP57255.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
          Length = 479

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 30/267 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M T AL ++ +K    IG+    +GV       P + +  + E   
Sbjct: 123 LAVAGANGKTTTSGMATAALVAAGEKPSFAIGANVAGLGVNAA----PGEGEIFVVEADE 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  F+ +   P +A++T I   HL  +     +A A       +   G +    DD
Sbjct: 179 S---DGSFVVY--HPQVAIVTNIKDDHLDFYGTSANLARAYETFAATIAPQGLLVACADD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI 288
               L  A+        + ++G+  +AD  +R   +  E   W      G ++    H +
Sbjct: 234 E-GSLALAQRRRAAGARVLTYGRDTDAD--VRIVAESGEGFDWRMSLRDGDAV----HDV 286

Query: 289 GYHM--AQNMLMTLGIVSILT-----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             H+  A N+L   G+ + L      A  D A + L  F    G  +R+      G   +
Sbjct: 287 ALHVPGAHNLLNAAGVYTALVHGFGLAPADVA-RGLGAFR---GTSRRFEPRGEAGGVRV 342

Query: 342 IDESYNANPASMKAAISVLSQISPHGE 368
           +D+ Y  NP  + A +   + +   GE
Sbjct: 343 VDD-YAHNPGKLDALVRTAAGLKDDGE 368


>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|169343556|ref|ZP_02864555.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
 gi|169298116|gb|EDS80206.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
          Length = 441

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T++V P + V+T+I+  H++     IEEI   K     G+ 
Sbjct: 137 VDYAVLEVG---LGGRLDATNVVIPEVVVLTSISLDHMNILGNTIEEITKEKC----GII 189

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           K+G   ++Y  ++   E++K + + LG    + +    KN      K  Q      +EV 
Sbjct: 190 KSGVPVISYPQEEKALEVIKERCNELGCNLEVVNTEDIKNIIIDKEKHVQ-----KIEVS 244

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTL 300
           L+ + +E+    +G H  +N L+ L
Sbjct: 245 LEDEILEIDLGLLGDHQVKNFLVAL 269


>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
          10507]
          Length = 485

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
          V  +  DSR +     F  I+G   DGH F+   V+KGAG++VV   + A
Sbjct: 23 VTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVKKGAGVLVVEEKVEA 72


>gi|145297486|ref|YP_001140327.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|172044438|sp|A4SI57|MURC_AERS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|142850258|gb|ABO88579.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 484

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 159/367 (43%), Gaps = 45/367 (12%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI G+ GKTTT  ++ +I   + +     IG   N  G   T AR+        + +  
Sbjct: 122 IAIAGTHGKTTTTSLVASIYAEADRDPTFVIGGLLNSAG---TNARL----GSSRYLIAE 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P ++++T I   H+  + G   ++ +   +    L   G   +  D
Sbjct: 175 ADESDASFL-HL-QPMVSIVTNIEADHMETYGGDFSKLKATFIDFLHNLPFYGLAVVCVD 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           D    +++     +   TI ++G S +AD Q+  + Q S +S   V+ +    + V  + 
Sbjct: 233 DP---VIRGMLPEIARPTI-TYGLSDDADVQVLDFVQTSNRSCFRVRRKDAGELAVTLNL 288

Query: 288 IGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYR----CALNQGFFT 340
            G H   N L     +++ T D    D  I AL+ F   EG G+R++        +G   
Sbjct: 289 PGIH---NALNAAAAIAVATEDGIGDDAIICALAKF---EGVGRRFQQYGEFETGRGKAM 342

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P+ +K  I+      P  + R + V          ++  + D ++VLS  +
Sbjct: 343 LVDD-YGHHPSEVKVTINAARTGWP--DKRLVMVF--QPHRYTRTRDLYEDFSDVLSKVD 397

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
           +     V+ +G   +   D  AL RSI         ++ T D +   +   + +GD+V+ 
Sbjct: 398 VLVMLEVYAAGEEPIPGADGRALCRSIRSRGSLEPIFAATPDDVPAILADLIGEGDLVLT 457

Query: 450 KSSNSCG 456
           + + + G
Sbjct: 458 QGAGNVG 464


>gi|320093974|ref|ZP_08025801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979080|gb|EFW10596.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 457

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  ML +AL S+       +G      G    L       D  + E   
Sbjct: 110 VGVAGAHGKTTTSGMLAVALRSVGADPSVAVGGVVPQFGSGAHLGAG----DVFVAEADE 165

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  FL +   P + V+T + P HL  +   E   +  AE    L   G +    +D
Sbjct: 166 S---DGSFLNY--SPSVEVVTNVEPDHLDRYGSREAFEAVFAEFASRLVPGGALVACAED 220

Query: 230 SFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                L + +   GI TI ++G+    ++  D  +      +  S   V+  G++
Sbjct: 221 PGASRLASHARERGITTI-TYGRPGRCAQRPDAAIEDVDSTASGSTARVEWDGQA 274


>gi|37523301|ref|NP_926678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gloeobacter
           violaceus PCC 7421]
 gi|62900564|sp|Q7NEZ5|MURD_GLOVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|35214305|dbj|BAC91673.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 441

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 133 IKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           I KT         +IG P+T L   P D D+ + EL    +         +RP +AV TT
Sbjct: 126 ILKTAGLRAPVCGNIGRPVTDLLLEPEDYDWIVAELSSFQIES----AQGIRPEVAVWTT 181

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             P HL+    +E  A+ KA +   L +     LN DD++ 
Sbjct: 182 FTPDHLNRHGTLERYAAIKAGL---LMQARRAVLNGDDAYL 219


>gi|256843669|ref|ZP_05549157.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|293380420|ref|ZP_06626489.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
 gi|256615089|gb|EEU20290.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|290922999|gb|EFD99932.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGD---------GRGKGVADSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F    +  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G +   DFQ  + ++ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATQIQKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D   + +  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIREGMLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
          Length = 443

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  ++              G+  N +   L +A
Sbjct: 90  ISEIEFAGRY-TNSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGNSLA--LQVA 146

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
             P   ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 147 EDP--HEYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFF--ELLKAKSHAL 242
            +   K  +     DD     EL K   HA+
Sbjct: 201 IQNQTKEDSFIYWNDDPVIKKELEKFDVHAV 231


>gi|153854762|ref|ZP_01995996.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
 gi|149752669|gb|EDM62600.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
          Length = 459

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 137/351 (39%), Gaps = 33/351 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+  L +        G  +  I V   L  +  ++  G  E  ++
Sbjct: 114 IAISGTHGKTTTTSMLSHILLA--------GEMDPTISVGGILKAIGGNIRVGNSEYFVT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I VI  I   HL  F  + +I ++     + L K GT+ +N +  
Sbjct: 166 EACEYTNSFLHFFPKIGVILNIDEDHLDFFKDLADIRNSFHRFAKLLPKDGTLVINDNIP 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI 288
             E + A      I+    +G   + D+        +  E S+  V+  G+ ++ +   +
Sbjct: 226 NLEEITADLDCRVIR----YGNDSSLDYSATNVLHDKKGEASFDLVK-SGEFIDRISLSV 280

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +L        + L  FH   G  +R+         T+ID+ Y 
Sbjct: 281 NGDHNVSNALSAIAVADLLGVPFTKIKEGLKSFH---GTDRRFEYKGEVNGVTVIDD-YA 336

Query: 348 ANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  + A ++   +           PH   R  A+  +  +   L+ + H+ LA++ + 
Sbjct: 337 HHPTEINATLTAAKEYPHKEIWCIFQPHTYTRTKALFPEFVDA--LTHADHVILADIYAA 394

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + +S    +  ++   +    +Y  + + +  F       GDV++ 
Sbjct: 395 RETDTLGMSS--EMIAEELKKKGCDAYYFPSFEEIENFCLDKCQKGDVLIT 443


>gi|15602005|ref|NP_245077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|30316119|sp|Q9CPB0|MURD_PASMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12720355|gb|AAK02224.1| MurD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +K  IIAITGS GK+T   ++   +++        G    +IG+P  L+ +    D  +
Sbjct: 103 EAKKPIIAITGSNGKSTVTSLVAHMVNAAGLKVGMGG----NIGIP-ALSLLEQAHDMYV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T+ ++   A +  I+  H++ +  +E+   AK +I+   +   T  
Sbjct: 158 LELSSFQLET----TYSLKATSATVLNISEDHMNRYVDLEDYRQAKLKIYHHAQ---TAV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +N +D+   +        G+K   SFG+  NAD+ L+  K
Sbjct: 211 INAEDALTAM-------DGLKNGVSFGED-NADYWLKTEK 242


>gi|296448265|ref|ZP_06890159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
 gi|296254217|gb|EFH01350.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
          Length = 473

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 14/143 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           AT IAITG+ GK+TT  ++   L    K          +IG P+     P +    + E 
Sbjct: 114 ATFIAITGTNGKSTTTALIAHILRRAGKDV----QLGGNIGTPILDLEPPSEERIHVIEC 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +     LT  + P I ++  + P H+     +++ A+ K  + +G +      +  
Sbjct: 170 SSFQID----LTPSLAPTIGILINLTPDHIDRHGTMDDYAAVKERLVDGAD---IALIGV 222

Query: 228 DDSFFELLKAK---SHALGIKTI 247
           DD +   + A+   +H  G + I
Sbjct: 223 DDVYCHAIGARLTQAHCEGQRVI 245


>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
 gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
          Length = 443

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  ++              G+  N +   L +A
Sbjct: 90  ISEIEFAGRY-TNSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGNSLA--LQVA 146

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
             P   ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 147 EDP--HEYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFF--ELLKAKSHAL 242
            +   K  +     DD     EL K   HA+
Sbjct: 201 IQNQTKEDSFIYWNDDPVIKKELEKFDVHAV 231


>gi|229192082|ref|ZP_04319051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
 gi|228591408|gb|EEK49258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
          Length = 450

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+A  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQGAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 166 TELSSFQLMGV----ELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  +++   +++ G K ++S  K 
Sbjct: 222 INADDA--DVMALSAYSKGQKILFSTTKE 248


>gi|228474999|ref|ZP_04059727.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|314936655|ref|ZP_07844002.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
 gi|228270984|gb|EEK12372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|313655274|gb|EFS19019.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKS 239
           RPHIA+IT I  AHL     +E   +AK  I++   +   +  NY        E LKAK+
Sbjct: 179 RPHIAIITNIYSAHLDYHESLENYQNAKRRIYKNQTEDDYLICNYHQRHLIETENLKAKT 238


>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 439

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 14/128 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163
           +  A +I ITGS GKTT    +T  +  + K   C  +   +IGVP L L   P   +  
Sbjct: 106 QGSAKVIGITGSNGKTT----VTTLVGEMAKACGCSYAVGGNIGVPALDLLLEP--KELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    L      TH ++   A    I+  H+  +S +E    AK +++   +++  +
Sbjct: 160 ILELSSFQL----ETTHSLQCTAATCLNISEDHMDRYSDLESYRQAKLKLY---KQSKMV 212

Query: 224 FLNYDDSF 231
             N +D+ 
Sbjct: 213 LFNREDAL 220


>gi|307296816|ref|ZP_07576634.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
 gi|306877729|gb|EFN08955.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
          Length = 925

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 124/335 (37%), Gaps = 60/335 (17%)

Query: 105 RSKATIIAITGSVGKTTTKEM---------LTIALSSIKKTYACIGSYNNHI------GV 149
           R +  I AITG+ GK+TT  M         L + +++    Y     +N H+        
Sbjct: 515 RGRIPIFAITGTNGKSTTARMVGRILCQHGLNVGMATTSGVY-----FNGHLLKEADASG 569

Query: 150 PLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIE 204
           P + ARM +    VD  + E   +  G +R      R  +  +  +   H  L     +E
Sbjct: 570 PRS-ARMVLRNPAVDAAVLE--TARGGILREGLGYDRADVGAVLNVTADHLGLKGIDTVE 626

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A  K+ + E + + G   LN DD     L+   HA G    +S          LR+  
Sbjct: 627 ALADVKSVVVENVARRGFSILNADDPM--CLRIARHAGGRIVWFSLEGGARMAETLRRHL 684

Query: 265 QCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ-----------NMLMTLGIVSILTA- 308
                + +    +G    VVH G    +  H ++           N+   L  V++  A 
Sbjct: 685 AAGGMAVLREADEGGGEIVVHRGGQRTVLMHASEIPATLGGIAEFNIANALAAVAMCMAH 744

Query: 309 --DVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +T    L  F    E    R     + G   ++D  Y  NPA + A   V+ ++  
Sbjct: 745 GVPAETVRDGLRAFTSSFEDSPGRLNMMESHGRRVIVD--YAHNPAGLIALGQVVDRLR- 801

Query: 366 HGEGRRIAVLG--------DMCEMGELSQSFHIDL 392
            G GR I ++         D+ EMG ++     D+
Sbjct: 802 GGHGRAIGMVSIPGDRRDCDIVEMGRIAAGIFDDI 836


>gi|322436296|ref|YP_004218508.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321164023|gb|ADW69728.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 463

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 110/288 (38%), Gaps = 47/288 (16%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IK 134
           IPV    ++L  L +L            IA+ G  GKTTT  M+   L+         + 
Sbjct: 96  IPVIQRAEMLAELMRLKYG---------IAVAGMHGKTTTTSMIAAVLAGGGLDPTVVVG 146

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                +GS N  +G    L     + D    +L                P +AV+T +  
Sbjct: 147 GRVDALGS-NARLGTSQYLVAEADESDRSFLKLS---------------PILAVVTNLDR 190

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   +  ++++ +A  +  + L   G      D+     +  +      + +Y++G+S 
Sbjct: 191 EHTDCYPTMDDVDAAFLQFMDALPFYGATTACIDNERLRGILPRVR----RKVYTYGESH 246

Query: 255 NADFQLRKWKQCSE-QSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDT 312
           +ADF+L         +S  EV  +G  +     H  G H   N    + +   L  D  +
Sbjct: 247 DADFRLEMLPGVDGVRSTFEVNYRGLLLGPFELHVPGRHNVLNATAAIAVGVQLGIDPAS 306

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAA 356
             K L+ F    G  +R++     G   ++D+ Y  +P    A++KAA
Sbjct: 307 IAKGLATFR---GVDRRFQLKGTVGGIAVVDD-YGHHPTEITATLKAA 350


>gi|298488533|ref|ZP_07006563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 454

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTL 153
           + ++  A RL SKA I AITG+ GKTTT  +L  I  +S  +TY        +IG PL  
Sbjct: 96  IGEVEFAYRL-SKAPIYAITGTNGKTTTTSLLGEIFKNSGVRTYVA-----GNIGYPLVE 149

Query: 154 ARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           A +   + D  + E+    L  I+      RP I+ I  I P HL+    +E   + K  
Sbjct: 150 AAVKAGNDDVIVAEISSFQLETIKEF----RPVISAIINITPDHLNRHKTLENYINIKGR 205

Query: 213 IFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKTI 247
           IFE         LNYDD    S F+  K K     ++ I
Sbjct: 206 IFENQSFNEYTVLNYDDKNISSLFDRAKCKVFPFSMEKI 244


>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
 gi|158512450|sp|A0M529|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
          Length = 445

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDV--D 161
           S+  +I ITGS GKTT   ++   L          G  N+ +G  +  + A+M  +   D
Sbjct: 101 SEVPVIGITGSNGKTTVTNLVQHLLKE--------GGINSGMGGNIGNSYAKMVAEEMHD 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
           + + EL    L  I       +PHIA++T I P HL  +   +E   ++K  I E   + 
Sbjct: 153 WFVLELSSFQLDGIEKF----KPHIAILTNITPDHLDRYDYKLENYIASKFRIAENQTEE 208

Query: 221 GTIFLNYDD 229
                + DD
Sbjct: 209 DYFIYDADD 217


>gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 448

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|282851650|ref|ZP_06261015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
 gi|282557618|gb|EFB63215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
          Length = 446

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 43/269 (15%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT- 121
           K  G+   N  MV     L+IPV    ++  ALN         S+A  + +TGS GKTT 
Sbjct: 65  KNPGIPYENP-MVEKALKLNIPVITEPEI--ALN--------VSEAPYVCVTGSNGKTTT 113

Query: 122 ---TKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRF 177
              T+ ++   LS        +G    +IGVP++ +     D D  + E+    L  +  
Sbjct: 114 VMLTQRIMDHHLSKNGGHAYAVG----NIGVPISEVVEKATDKDLLVVEMSSFQLLGVT- 168

Query: 178 LTHLVRPHIAVITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---E 233
               ++P +A I  I    HL      +    AK  I +  ++      N+D       E
Sbjct: 169 ---DIKPKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQNDYFIANFDQKNILDRE 225

Query: 234 LLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYH 291
           L K K+       + +F ++ K AD+ +          ++E +   + M++    I G H
Sbjct: 226 LKKTKAK------VQTFSETDKTADYFIG-------DEYLESKDDHQIMKISDIKIPGIH 272

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVF 320
             QN L+ + I  ++ AD      ALS F
Sbjct: 273 NQQNCLVAIAISKLMGADDSDIQYALSTF 301


>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
 gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
          Length = 468

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +L  L  A+  RS  T + ITG+ GK+T   +    L +  ++    G    ++GVPL+ 
Sbjct: 111 SLALLVAASWPRSLETAL-ITGTNGKSTVTALTGALLEAGGRSTFTGG----NLGVPLS- 164

Query: 154 ARMPVDVDFGIFELGMSHLGEIR-FLTHLVRPH------IAVITTIAPAHLSNFSGIEEI 206
             + + V  G  E   + + E   +    +R H      +A++  ++P HL  +  +E  
Sbjct: 165 -ELVLAVARGEREAPEALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDRYDSLEHY 223

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           A  K  +F GLE  G   L+  D+F   L+
Sbjct: 224 AETKGRVFGGLEPGGLALLSARDAFTPRLR 253


>gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
 gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
          Length = 481

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           QGH          + I  DSR  A +++ F +KG  +   +F+L A+ +G G  V   D 
Sbjct: 23  QGHYHYNYSDVVFDTICYDSRK-AKEKSLFFVKGAAFK-KEFLLSAISQGLGWYVAEKDY 80

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
                 + IP   V D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 81  -----EVGIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
 gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
          Length = 492

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 23/226 (10%)

Query: 81  LSIPV--FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTY 137
           LS P+  + +D  +  +++L  AA    KA  I A+TG+ GK+T    +T     I +  
Sbjct: 97  LSEPILAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKST----VTTFTGQILQQA 152

Query: 138 ACIGSYNNHIGVPLTLA-----RMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   ++G P + A     + P D       + E+    L     L     P + VI
Sbjct: 153 GVRTFVGGNLGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLE----LPGSFSPSVGVI 208

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++P HL     +E     K  +FE ++ +    + + D F   +  K ++   K    
Sbjct: 209 LNLSPDHLERHKSMENYGETKCRLFERMDSSKLSIIPHADEFLRKVAYKYNSGSTKAWLG 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  D Q R+       +  E +L    ++ V    G H AQN
Sbjct: 269 ALPGVQLDSQARRAVVVVPTTKAEARLYLSGLKAV----GSHNAQN 310


>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 504

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +  +   L +      
Sbjct: 33  VTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVECAPARLLLAPSARR 92

Query: 90  DVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
            +  A        A RLR    + A+TG+ GKTT
Sbjct: 93  AMALAAASFCGRPAERLR----MAAVTGTNGKTT 122


>gi|260910909|ref|ZP_05917551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634966|gb|EEX53014.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 443

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +G ++++  A R  + A ++ ITGS GKTTT  ++      I KT         +IG  L
Sbjct: 87  IGIVSEIEFAGRY-TDAKMVCITGSNGKTTTTSLIY----HIFKTAGYNVGLGGNIGRSL 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
            L       D+ + EL    L ++ RF     + HIAV+  I P HL  ++  ++    A
Sbjct: 142 ALQVAEGAHDWYVIELSSFQLEDMYRF-----KAHIAVLLNITPDHLDRYNYRMQGYVDA 196

Query: 210 KAEIFEGL 217
           K  I + L
Sbjct: 197 KMRILQNL 204


>gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
 gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
          Length = 481

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + IS DSR       FFA KG  +   ++++ A+ +G G  V   D       + IPV  
Sbjct: 36  DSISYDSRKAKENCLFFA-KGAAFK-EEYLVSAISQGLGWYVAEKDY-----QVGIPVIV 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V+++  A++ +A+      + K  I+A TG+ GKTT
Sbjct: 89  VNNIKKAMSLIAMVFYGNPQKKLKILAFTGTKGKTT 124


>gi|322421364|ref|YP_004200587.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
 gi|320127751|gb|ADW15311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
          Length = 453

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 27/184 (14%)

Query: 146 HIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG PL  LA    +VD  + EL    L  I       RPH+AV+  +   HL  +   +
Sbjct: 142 NIGDPLIDLAMSGEEVDRVVVELSSFQLEGIESF----RPHVAVLLNLTEDHLDRYHSFQ 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E   AK  IFE         LN DD    L+ A +  L           K   F + ++ 
Sbjct: 198 EYIDAKLRIFENQGPADFAVLNIDDP---LVAACASKL-----------KAQLFPMSRFH 243

Query: 265 QCSE-----QSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +  E       ++    +GK +     G    G H   N++ ++    ++  D D A +A
Sbjct: 244 ELQEGISYRDGFITFARKGKVLRFGTDGFKLKGVHNLDNIMASMASTLLMGCDGDCAYQA 303

Query: 317 LSVF 320
           +  F
Sbjct: 304 VKSF 307


>gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
 gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
          Length = 443

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 23/159 (14%)

Query: 107 KATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVD 161
           +  IIAITGS GKTTT  ++      S +    A       +IG P+    L R     D
Sbjct: 107 RDQIIAITGSNGKTTTTSLVGHLCQQSGLDTVVA------GNIGTPVLDAWLQRQGKSAD 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A    I+  HL+ +  + + A  K +IF G     
Sbjct: 161 VWVLELSSFQLE----TTPCLAAAAAACLNISEDHLNRYDDLLDYARTKDQIFNGCR--- 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           T  LN DD F   +    H    +T Y F  ++ AD+ L
Sbjct: 214 TQILNADDPFCRAM----HRPEQQTRY-FSLAQAADYWL 247


>gi|315658530|ref|ZP_07911402.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
 gi|315496859|gb|EFU85182.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
          Length = 449

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKS 239
           RPHIA+IT I  AHL     +E   +AK +I++       +  NY        E LKAK+
Sbjct: 179 RPHIAIITNIYSAHLDYHGTLENYQNAKKQIYKNQTADDYLICNYHQRHLIESEQLKAKT 238


>gi|282882890|ref|ZP_06291495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297301|gb|EFA89792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ L  A ++ S   +IAITG+ GKTTT  ++   L  + KTY  +G+    I     +A
Sbjct: 86  ISDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQILRQVNKTYV-VGNIGRGIS---EIA 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E     L +    TH  +P +A++T +   HL      +   +AK +IF
Sbjct: 142 LEAKNNDFIVIEASSFQLED----THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIF 197

Query: 215 EGLEKTGTIFLNYDDSFFELLK 236
              +K     +NYDD   + LK
Sbjct: 198 ANQDKDDFSIINYDDRSRDDLK 219


>gi|238791173|ref|ZP_04634812.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
 gi|238729306|gb|EEQ20821.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
          Length = 491

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + +  ++AL  F   +G G+R+    N
Sbjct: 277 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A I 
Sbjct: 334 FPLMPVNGKEGSAMLVDD-YGHHPTEVDATIK 364


>gi|254510884|ref|ZP_05122951.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534595|gb|EEE37583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
          Length = 469

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           +IA+TGS GK+TT  ++   L+   ++    G+          + R  +D+D G      
Sbjct: 127 VIAVTGSNGKSTTAALIHHILTEAGRSAQLAGN----------IGRGVLDIDPGGDGSVV 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT 222
           + EL        R LT    P +AV T ++P HL    G+    +AK  +F EG      
Sbjct: 177 VLELSSYQTELARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAV 232

Query: 223 IFLNYDDSFF 232
           I ++  +  F
Sbjct: 233 IGIDEAEGAF 242


>gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
 gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
          Length = 511

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+  DSR +     FFA++G   DGHD+I+ +  +GA  VVV        G   +   
Sbjct: 23  IEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRGAVAVVVEDPSRVPEG---MTWL 79

Query: 87  GVDDVLGALNKLAVA 101
            VDD   A+++ A A
Sbjct: 80  KVDDARLAMSRAAAA 94


>gi|289551034|ref|YP_003471938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180566|gb|ADC87811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 449

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKS 239
           RPHIA+IT I  AHL     +E   +AK +I++       +  NY        E LKAK+
Sbjct: 179 RPHIAIITNIYSAHLDYHGTLENYQNAKKQIYKNQTADDYLICNYHQRHLIESEQLKAKT 238


>gi|154509044|ref|ZP_02044686.1| hypothetical protein ACTODO_01561 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798678|gb|EDN81098.1| hypothetical protein ACTODO_01561 [Actinomyces odontolyticus ATCC
           17982]
          Length = 481

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 22/142 (15%)

Query: 84  PVFGVDDVLG--ALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKT 136
           PVF   +  G     ++ +A RL+ +        + +TG+ GKTTT  ML   L      
Sbjct: 81  PVFSACEAAGIEVWGEVELAWRLQEEGPHAGRPWLVVTGTNGKTTTVGMLGEILRCAGAK 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---PHIAVITTIA 193
              +G    +IG P+T A   +D D  +F + +S      F  H VR   P  ++   + 
Sbjct: 141 AEQVG----NIGTPITRA---IDSDAEVFAVELSS-----FQLHTVRTVSPLASICLNVD 188

Query: 194 PAHLSNFSGIEEIASAKAEIFE 215
             HL     +E  A+ KA ++E
Sbjct: 189 ADHLDWHGSVEAYAADKARVYE 210


>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
 gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
          Length = 445

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A ++ ITGS GKTT   +L   ++S       IG    +IG P  L  +  +++  I EL
Sbjct: 108 AKVVTITGSNGKTTVTSLLG-EMASASPLNVAIGG---NIGTP-ALDLLDPNINLYILEL 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +   IA I  I+  HL  +   +    +K  I++  +K      N 
Sbjct: 163 SSFQLET----TTSLNADIATILNISADHLDRYRSYDHYIQSKHIIYQQCKKA---LFNI 215

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +D+     + K  +  +  I  FG ++NADFQL K
Sbjct: 216 EDA-----QTKPLSCALDQI-CFG-AENADFQLVK 243


>gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
          Length = 461

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 27/133 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GK+TT  ++   L               H G P  LA    ++  G+ ++  
Sbjct: 116 IIAITGSNGKSTTSALVHHIL--------------KHAGRPTQLAG---NIGRGVLDIEP 158

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           +  GE+       + T L R   P +AV T ++P HL   +G+    +AK  +F EG   
Sbjct: 159 AIDGEVVVLELSSYQTDLARNLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPD 218

Query: 220 TGTIFLNYDDSFF 232
              I ++  +  F
Sbjct: 219 RAVIGVDEPEGRF 231


>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 445

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 27/229 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + ATI+ ITGS GKTTT  +    L          G    +IG          ++D  + 
Sbjct: 101 TDATIVGITGSNGKTTTTMLTGFILEQAGINLGVAG----NIGDSYAKMVAQKEIDTYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  + P HL  +    E   ++K  I   + +  T +
Sbjct: 157 EISSFQLDGIADFA----PHIAVVLNVTPDHLDRYDYKFENYIASKFRI--AMNQKETDY 210

Query: 225 LNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS---EQSWMEVQLQGKS 280
           L YD D    +   K H +         KSK   F L K  +     + + + VQL   +
Sbjct: 211 LIYDADDPVSVDWLKKHPV---------KSKLLPFSLDKEFENGAFIKDNNLTVQLNNNT 261

Query: 281 MEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +  + +   G H  +N +    + ++L     T  ++L  F   E R
Sbjct: 262 FTMATNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVEHR 310


>gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 491

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 153/390 (39%), Gaps = 51/390 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR +     F  I+G   DGH F+   V KGA +++V   + A      + V 
Sbjct: 29  VKNVVYDSRKVEEGSLFICIRGAVVDGHKFVPDVVAKGAKVLIVEEAVEA---PEDVTVI 85

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  ++ A       K   I ITG+ GKTTT  M+   L +       IG+  
Sbjct: 86  LVKDTRYAMAFISAAYFGYPAEKLKTIGITGTKGKTTTTYMVKSILENAGYKVGLIGTIE 145

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
             IG  +  A+      + I E              + +S  G +   T        + T
Sbjct: 146 AIIGDKVIPAKNTTPESYVIQEYFHEMAEAGCDCVVMEVSSQGLMLHRTQGFVFDFGIFT 205

Query: 191 TIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            I P H+  +     ++    K+ +   L++     +N DD  FE +  + H   ++T  
Sbjct: 206 NIEPDHIGPNEHKDFDDYLRCKSLL---LKQCKVGIVNRDDEHFEKI-IEGHTCSLET-- 259

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSI 305
            +G S  AD +    K    + ++ +    K +   H  I   G     N L  + I   
Sbjct: 260 -YGFSPEADLRAEDAKLVGGKGYLGISYHLKGLLDFHVEIDIPGKFSIYNSLTAIAICRH 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  +KAL V   K   G+     ++  F  +ID ++NA   ++++ ++ L +  P
Sbjct: 319 FKVSEENILKALKVAKVK---GRIEMVKVSDDFTLMIDYAHNA--MALESLLTTLKEYHP 373

Query: 366 HGEGRRIAVLGDMC----------EMGELS 385
           H   R + + G  C          EMGE+S
Sbjct: 374 H---RLVCLFG--CGGNRSKLRRYEMGEVS 398


>gi|21672497|ref|NP_660564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25090714|sp|Q8K9T2|MURD_BUCAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21623116|gb|AAM67775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 38/264 (14%)

Query: 105 RSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            +K  II+ITG+ GK+T   M+  IA  S  K    +G    +IG P+ L  +       
Sbjct: 103 ETKCPIISITGTNGKSTVATMVKKIAEKSGYK--VLLGG---NIGFPV-LEMLNKKASLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-T 222
           + EL    L      T  ++  IAV+  I   HL  +           E FE  +KT  +
Sbjct: 157 VLELSSFQLET----TFNLKSKIAVVLNITEDHLDRY----------PEGFEQYKKTKLS 202

Query: 223 IFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           I+        +L K +      K+    SFG   N D+ +   K+       +  L  K+
Sbjct: 203 IYNKAKICLIKLKKGEKKPFNTKSKKYISFGTCNNNDYYINYEKE-------KAILFHKN 255

Query: 281 MEVVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++V        G+H  +N+L +L I   +  D   +I  L  F    G   R++     
Sbjct: 256 KKIVDTSNILLNGHHNYENILTSLAISDQMKFDQKVSINVLKKFL---GLPHRFQTVHIN 312

Query: 337 GFFTLIDESYNANPASMKAAISVL 360
              + I++S + N  S KAA+  L
Sbjct: 313 NNISWINDSKSTNVDSTKAALKNL 336


>gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
          Length = 483

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR +     FFA KG  +   +++  AVQ G    V   D       L IP   V 
Sbjct: 39  ISFDSRDVDSSTLFFA-KGATFK-KEYLEQAVQLGLPFYVSQVDY-----ELDIPAIIVT 91

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+        K  IIA TG+ GKTT
Sbjct: 92  DIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTT 125


>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
 gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
          Length = 505

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIP 84
          +  +  DSR + P   FFA++G   DG +F+  AV+ GA  VV +    VA +  + +P
Sbjct: 23 ITSLCYDSRQVRPGALFFALRGVKSDGTEFVESAVKGGAVAVVADRPCAVAGVTCIEVP 81


>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
 gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
          Length = 441

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 29/237 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG    +IGV +      
Sbjct: 88  LELAQRIFEDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIG----NIGVGMLWEIYN 143

Query: 158 VDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            D D + + E     L      T   +P  + I  I P H+     ++   +AK  + + 
Sbjct: 144 SDKDTYFVIECSSFQLES----TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKN 199

Query: 217 LEKTGTIFLNYDDSFFELLK--AKSHALGIKTIY-----SFGKSKNADFQLRKWKQCSEQ 269
            ++     LN DD ++E  K   KS+   + T       SF K  +  F      +  + 
Sbjct: 200 QDENCYTVLNVDDEYYEECKKFTKSNVYDVSTSTDVKKGSFIKDDSIYFSDSDCNKIID- 258

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +V+L           IGYH  QN+L  + +  ++  + D+  + L  F   E R
Sbjct: 259 -LKDVKL-----------IGYHNYQNVLFCVTLAKLIGINDDSIRQTLMSFSGVEHR 303


>gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
 gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 27/133 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITGS GK+TT  ++   L               H G P  LA    ++  G+ ++  
Sbjct: 122 IIAITGSNGKSTTSALVHHIL--------------KHAGRPTQLAG---NIGRGVLDIEP 164

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           +  GE+       + T L R   P +AV T ++P HL   +G+    +AK  +F EG   
Sbjct: 165 AIDGEVVVLELSSYQTDLARNLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPD 224

Query: 220 TGTIFLNYDDSFF 232
              I ++  +  F
Sbjct: 225 RAVIGVDEPEGRF 237


>gi|114564956|ref|YP_752470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336249|gb|ABI73631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++ ITGS GK+T   ++   L +  K+ A  G    +IG P  L  +P + DF + E
Sbjct: 108 KPCVVGITGSNGKSTVTTLVYEMLLAAGKSVAIGG----NIGTP-ALDLLPQNADFYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH +    A    ++  H+  +S +     AK  ++    ++  +  N
Sbjct: 163 LSSFQLET----THSLNCIAATCLNVSEDHMDRYSDLNTYREAKLRLY---PQSRFVMYN 215

Query: 227 YDDSF---FELLKAKSHALGIKTIYSFGKSKNADF 258
            DD      E +   +  LG+    ++G S    F
Sbjct: 216 RDDELTYPLEPMNQNNFGLGVPEGDAWGLSDGKIF 250


>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 491

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 116/299 (38%), Gaps = 43/299 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I  DSR +     F  +KG   D HDF   A  +GA  +V    +      + +PV 
Sbjct: 23  ITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPI-----DVDVPVV 77

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +       IG+ N
Sbjct: 78  LVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLIGTIN 137

Query: 145 NHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185
             IG               +  T A+M    VD  + E+  SH   LG +    H     
Sbjct: 138 MKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVS-SHALDLGRV----HGCDYD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSF-FELLKAK 238
           +AV T +   HL     +EE   AK  +F  L       +     LN DD+   E +++ 
Sbjct: 193 VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVTVEYMRST 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +      T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L
Sbjct: 253 A-----ATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVL 306


>gi|294506461|ref|YP_003570519.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
 gi|294342789|emb|CBH23567.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
          Length = 879

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 20/276 (7%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT+I   HL  +  +  I +A  +    +   G   L  DD   + +        
Sbjct: 586 PSLAVITSIEEDHLDVYEDLAAIQAAFTQYANSVPFFGAAILCLDDPNVQAIVGDVE--- 642

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGI 302
            + + ++G ++ A+ +    ++    +  +V ++G+ +  +  H  G H  +N L  + +
Sbjct: 643 -RRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGERLGTIELHVPGMHNVRNALAAVAV 701

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +     L  F    G  +R+      G  T++D+ Y  +P  ++A +    Q
Sbjct: 702 GQELEISFERVRDGLGTF---TGVRRRFEKKGEVGGITVLDD-YAHHPTEIEATLDAAHQ 757

Query: 363 ISPHGEGRRIAVLGDMCE------MGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALK 415
             P  + R +AV            M E ++S F+ D+  +  +Y      + G     L 
Sbjct: 758 GFP--DRRVVAVFQPHMYSRTQNFMDEFARSFFNADMLVLTDVYGAREAPIEGVTGGRLA 815

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  H  VHY      L   +Q  +  GDVV++
Sbjct: 816 ERAEQFGHRAVHYVPEKTDLPGRLQELVGPGDVVLM 851


>gi|293192326|ref|ZP_06609437.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           odontolyticus F0309]
 gi|292820241|gb|EFF79235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           odontolyticus F0309]
          Length = 481

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 22/142 (15%)

Query: 84  PVFGVDDVLG--ALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKT 136
           PVF   +  G     ++ +A RL+ +        + +TG+ GKTTT  ML   L      
Sbjct: 81  PVFSACEAAGIEVWGEVELAWRLQEEGPHAGRPWLVVTGTNGKTTTVGMLGEILRCAGAK 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---PHIAVITTIA 193
              +G    +IG P+T A   +D D  +F + +S      F  H VR   P  ++   + 
Sbjct: 141 AEEVG----NIGTPITRA---IDSDAEVFAVELSS-----FQLHTVRTVSPLASICLNVD 188

Query: 194 PAHLSNFSGIEEIASAKAEIFE 215
             HL     +E  A+ KA ++E
Sbjct: 189 ADHLDWHGSVEAYAADKARVYE 210


>gi|269959054|ref|YP_003328843.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma centrale
           str. Israel]
 gi|269848885|gb|ACZ49529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma centrale
           str. Israel]
          Length = 456

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVDVDFGI 164
           A +I +TG+ GK+TT E++   L+       C G       ++G    L+ +P   +  +
Sbjct: 111 ARLIGVTGTNGKSTTVELIGWILN-------CAGIDSETGGNVGGKGALS-LPQGKEAYV 162

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     L H     I V+  IAP HL  +SG+ +  SAK +I   L+ +  + 
Sbjct: 163 LELSSYQLE----LMHEASLDIGVVLNIAPDHLDVYSGMADYISAKEKI---LKFSNLLV 215

Query: 225 LNYDD 229
            N DD
Sbjct: 216 ANCDD 220


>gi|217979587|ref|YP_002363734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Methylocella
           silvestris BL2]
 gi|217504963|gb|ACK52372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocella
           silvestris BL2]
          Length = 461

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 17/144 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVD 159
           R+   A +IAITG+ GK+TT  +       I   +A +G       +IG P+     P  
Sbjct: 109 RIAPDAPLIAITGTNGKSTTTAL-------IAHLFATLGFDVQIGGNIGTPILALEPPSS 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E     +     L   + P + V+  + P HL     +E  A+ KA +    + 
Sbjct: 162 ERVHVVECSSYQID----LAPSLDPTVGVLLNVTPDHLDRHGTMENYAAIKARLVSAADH 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALG 243
                +  DD+F   +  K  A G
Sbjct: 218 A---VIGVDDAFCAAIAKKLRAEG 238


>gi|30316124|sp|Q9F1N2|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
          Length = 449

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +V+G +   A A + RS   +I ITGS GK+T   ++     +    YA  G    +IG+
Sbjct: 92  EVIGDVELFARAIKDRSPC-VIGITGSNGKSTVTTLVGEMAKAAGLNYAVGG----NIGI 146

Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P L L + P  VD  I EL    L      TH +    A    I+  H+  +S +E    
Sbjct: 147 PVLDLLQKP--VDLYILELSSFQLET----THSLNCISATCLNISEDHMDRYSDLEAYRQ 200

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE 233
           AK  ++   +++     N +DS  +
Sbjct: 201 AKLALY---DQSKRALFNREDSLTQ 222


>gi|319957735|ref|YP_004168998.1| UDP-N-acetylmuramate--l-alanine ligase [Nitratifractor salsuginis
           DSM 16511]
 gi|319420139|gb|ADV47249.1| UDP-N-acetylmuramate--L-alanine ligase [Nitratifractor salsuginis
           DSM 16511]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 103/251 (41%), Gaps = 27/251 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + A+ G+ GK+TT  ML    S + +T A IG+ +   G  +  A  P D    +FE   
Sbjct: 103 VYAVGGAHGKSTTSAMLA---SLLPETNALIGAISKEFGSNVRSA--PNDK--VVFEADE 155

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  FL     P +A++T + P H+  +   EE        F  LE      LN +D
Sbjct: 156 S---DESFLNS--NPKLAIVTNVEPEHMEYYEYDEERFYNAYRKF--LELAHIRVLNGED 208

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            F   LK +   L    +Y      N +F L         +  E++  G+  EV   G G
Sbjct: 209 PFLYSLKEE---LPSSYLYPSRDLNNIEFVL---VDGEPHTRFELRDLGR-FEVF--GFG 259

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H+A +  + +     L  D +T  + L  +    G  KR+    N     +ID+ Y  +
Sbjct: 260 THIAVDAALAILAAMELGEDPETLRERLKNYR---GIKKRFDIIQNDEHCVVIDD-YGHH 315

Query: 350 PASMKAAISVL 360
           P  + A +  L
Sbjct: 316 PTEIAATLESL 326


>gi|315122721|ref|YP_004063210.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496123|gb|ADR52722.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 424

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT----AIKALSVFHPKEGRGKRY 330
           Q++G  M+       Y   + M   LG  +++  D  T    AI  LSVF+  E  G+  
Sbjct: 297 QMRGAIMD-------YDSLKAMGSGLGTAAVIVMDRSTDIIRAIWRLSVFYKHESCGQCT 349

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--EMGELSQSF 388
            C    G+   + E       + K  I +L ++S + EGR I  LGD     +  L ++F
Sbjct: 350 PCREGTGWMMRLMERM-VRGVAQKHEIDMLFEVSKNIEGRTICALGDAAAWPIQGLIKNF 408

Query: 389 HIDLAEVLSLYNISH 403
              + E +  YN+ H
Sbjct: 409 RHVMEERIDQYNVHH 423


>gi|182414448|ref|YP_001819514.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
 gi|177841662|gb|ACB75914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
          Length = 442

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T+IA+TG+ GKTT  E LT AL SI +    +G+  +     +  +         + E
Sbjct: 96  RGTVIAVTGTNGKTTLTEFLTHALRSIGRDARSVGNVGHSFAQAVAESNGGTSEQIAVCE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           +      +   L H  R    + T IA  HL    G+E   +AK
Sbjct: 156 VSSF---QAETLKHF-RASATLWTNIAEDHLERHPGLESYFNAK 195


>gi|145637113|ref|ZP_01792776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
 gi|145269767|gb|EDK09707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 138/356 (38%), Gaps = 69/356 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GK+T   + T+     K     +G   N IG+P  L+ +  D +  + EL  
Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T+ ++   A +  +   H+  +  +E+   AK  I+    K G   LN +D
Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287
                              +FG+++N       + + S   W++ +  GK   +V     
Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256

Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+L  + +   +  ++D+   AL  F   +G   R++        
Sbjct: 257 LPCEEATLVGRHNYMNILAAIALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393
             I++S   N  S  AA++ L     + EG+   +LG      D  E+ EL    HI   
Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +      L+ F           S   +  ETM     F++ +L  GD+V++
Sbjct: 366 -ICYCFGRDGALLAKF-----------SSQSYLFETMKQAIEFLRPTLQSGDMVLL 409


>gi|300813304|ref|ZP_07093659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512575|gb|EFK39720.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 438

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ L  A ++ S   +IAITG+ GKTTT  ++   L  + KTY  +G+    I     +A
Sbjct: 86  ISDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQILRQVNKTYV-VGNIGRGIS---EIA 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E     L +    TH  +P +A++T +   HL      +   +AK +IF
Sbjct: 142 LEAKNNDFIVIEASSFQLED----THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIF 197

Query: 215 EGLEKTGTIFLNYDDSFFELLK 236
              +K     +NYDD   + LK
Sbjct: 198 ANQDKDDFSIINYDDRSRDDLK 219


>gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 460

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          V+G+ IDSR I   + F  I G   DGHDF   AV  GA  +VV 
Sbjct: 23 VSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAVALVVE 67


>gi|58337842|ref|YP_194427.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           NCFM]
 gi|227904491|ref|ZP_04022296.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           ATCC 4796]
 gi|68565671|sp|Q5FIS8|MURC_LACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58255159|gb|AAV43396.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus acidophilus
           NCFM]
 gi|227867746|gb|EEJ75167.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           ATCC 4796]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L   L  +  T   IG      GV         D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLAHVLGEVAPTSYLIGDGRGK-GVD--------DSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F   ++  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD   + LK           Y++G     DFQ    K+ +  S   V   GK +     
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKTTTGSSFNVLAHGKDLGRFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D   + L  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNATAVIAVAYTEKVPMDAIREGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|320183625|gb|EFW58468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           CDC 796-83]
          Length = 438

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 54/365 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63
           QG ++ I+  G      +D   +R + P+     +  P   G D +  AV++        
Sbjct: 5   QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEAVERHTGSLNDE 61

Query: 64  ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A L+V +  +  +  SLS       +++G +      A    +A I+AITGS GK+
Sbjct: 62  WLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA----QAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T    +T  +  + K          +IG+P   A M +D +  ++ L +S   ++   T 
Sbjct: 118 T----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDAECELYVLELSSF-QLE-TTS 168

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   A I  +   H+  +  G+++  +AK  I+E  +      +N DD+    ++   
Sbjct: 169 SWKAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCVVNADDALTMPIRGAD 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQN 295
                +   SFG +   D+ L   +    ++W+ V+    L  K M++     G H   N
Sbjct: 226 -----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKEMKLS----GQHNYTN 272

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +         +++KAL+ F    G   R+   L       I++S   N  S +A
Sbjct: 273 ALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVRWINDSKATNVGSTEA 329

Query: 356 AISVL 360
           A++ L
Sbjct: 330 ALNGL 334


>gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
 gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
          Length = 481

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 9   DLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           DL + I  QGH          + I  DSR  A +++ F +KG  +   +F++ A+ +G G
Sbjct: 15  DLFREIIDQGHYHYNYSHVIFDTICYDSRK-AKEKSLFFVKGAAFK-KEFLISAISQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
             V   D       + IP   V D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 73  WYVAEKDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAFTGTKGKTT 124


>gi|256845952|ref|ZP_05551410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719511|gb|EEU33066.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 468

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 126/328 (38%), Gaps = 40/328 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KG   V+ +T +  +   LS   +  ++ +  L +  + A+L ++ T 
Sbjct: 58  YNEHD---EENVKGVDYVIASTAIKETNPELS---YAKNNGITLLKRGELLAKLLNRETG 111

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  + S   T    G           L  +  +   G  E  ++
Sbjct: 112 IAIAGTHGKTTTSSMLSAVMLSKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              E       + P  AVIT I   HL     ++ I  +  E     +K   I +   N 
Sbjct: 162 EADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFISHTQKEAIICMDCENL 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++   L K KS        YS  K +N     R  +    ++  E+ +  + +      
Sbjct: 222 KEAITRLPKGKS-----VITYSI-KDENTSIFARNIRITDRKTIFELYINKELIGEFSLN 275

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF---- 338
           I G H  QN L  + +        +   +AL+ F   +G  +RY       L  G+    
Sbjct: 276 IPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKF---KGSKRRYDVLFDKELENGYGNKT 332

Query: 339 --FTLIDESYNANPASMKAAISVLSQIS 364
               +ID+ Y  +P  +KA +  +  I 
Sbjct: 333 KKVRIIDD-YAHHPTEIKATLKAIKSID 359


>gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium kansasii ATCC 12478]
          Length = 528

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 160/392 (40%), Gaps = 78/392 (19%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG--SLSIP 84
           + G+++ ++ + P + F A+ G    G      A+++GA  V+ + D VA++G  + S+P
Sbjct: 45  ITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIERGAVAVLTDADGVAAMGAHAASVP 104

Query: 85  VF---GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           V        VLG L    V  R   + T++ ITG+ GKTTT  ++   L +  +    IG
Sbjct: 105 VLVHPAPRSVLGGLAAT-VYGRPSERLTVVGITGTSGKTTTTYLVEAGLRAGGRVAGLIG 163

Query: 142 SYNNHI---GVP--LTLARMPV-----------DVDFGIFE-----LGMSHLGEIRFLTH 180
           +    I    +P  LT    P             VD  + E     L +  +   RF   
Sbjct: 164 TIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVDTVVMEVSSHALALGRVDGTRFA-- 221

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAK 238
                +   T ++  HL     +E+   AKA +F+     + GT+ +  DD     +  +
Sbjct: 222 -----VGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAGTVVVCVDDDAGRAMAER 276

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQ-------CSEQSWMEVQLQGKSMEVVHHGI--- 288
           +       I    + + A      W+         + Q +  +   G     V H +   
Sbjct: 277 AG----DAITVSARDRAA-----HWRAVDVVPMGAAGQEFTAIDPAG-----VQHRVRIG 322

Query: 289 ---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCALNQGFFTLID 343
              GY++A N L+ L I+  +    + A   L     ++ R  G+  +    Q F  L+D
Sbjct: 323 LPGGYNVA-NCLLALAILDSIGVSPEQAAPGL-----RQARVPGRLEQVDRGQDFLALVD 376

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             Y   P +++A ++ L+  SP    RR+AV+
Sbjct: 377 --YAHKPGALRAVLTTLT--SPD---RRLAVV 401


>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
 gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
          Length = 462

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + +++ +TGS GKTTT  ++   L       +  G    +IG PL  A +  + ++ + E
Sbjct: 108 RGSLLGVTGSNGKTTTTSLIGHLLREEGVRVSVAG----NIGNPLASA-VREEAEWVVAE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           L    L   R L    R  +AV+T +AP H+      E    AKA +   L+ T
Sbjct: 163 LSSFQLHWARRL----RCSLAVVTNLAPDHIDWHGSYEAYVDAKANLVRALDPT 212


>gi|292489356|ref|YP_003532243.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|292898420|ref|YP_003537789.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291198268|emb|CBJ45374.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291554790|emb|CBA22612.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|312173521|emb|CBX81775.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 491

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEGGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   L  DD+    L  +   +G + I ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVLCVDDAVIRDLIPR---VG-RQITTYGFSDDADVRVENYQQLGAQGHFTLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             K  M+V  +  G H A N    + + +    + +  + AL  F   +G G+R+
Sbjct: 277 HDKPLMQVTLNAPGRHNALNAAAAVAVATEENIEDEDILNALESF---QGTGRRF 328


>gi|323705831|ref|ZP_08117403.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534827|gb|EGB24606.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 875

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 106 SKATI--IAITGSVGKTTTKEML---------TIALSSIKKTY---ACIGSYNNHIGVPL 151
           SKATI  I++TG+ GKTTT  M+         T+ ++S    Y    CI  Y      P 
Sbjct: 474 SKATIPIISVTGTNGKTTTVRMISHILKIYGYTVGMTSTDGIYVDDVCI--YKGDNSGPK 531

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASA 209
           +      D +     L  +  G +R         I +IT I+  HL       +E++A  
Sbjct: 532 SARTCLADKNIDAAVLETARGGIVREGLGYDLADIGIITNISEDHLGIDGIETLEDLAFV 591

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           K+ + E ++K G   LN DD     +  ++     K IY
Sbjct: 592 KSLVVEAVKKDGYSVLNADDPMTPYIAKRAKG---KIIY 627


>gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
          ligase-like protein [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
          ligase-like protein [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 495

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          V+G+ IDSR I   + F  I G   DGHDF   AV  GA  +VV 
Sbjct: 23 VSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAVALVVE 67


>gi|229507538|ref|ZP_04397043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
 gi|229355043|gb|EEO19964.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
          Length = 506

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFNVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|84394433|ref|ZP_00993149.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
 gi|84374932|gb|EAP91863.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
          Length = 373

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 23/225 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++T   S   +  T+   G     +G    L    +        + 
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVN-GGLVKSVGTNARLGSSRI-------LIA 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G   +  
Sbjct: 177 EADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCV 234

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    EL+   S     + + ++G S++AD ++  + Q  +Q    V  +GK+ +++  
Sbjct: 235 DDPVVRELIPQVS-----RQVITYGFSEDADIRIENYVQQGQQGKFTVVRKGKANLDITL 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  G H   N L     +++ T D  +    L      EG G+R+
Sbjct: 290 NIPGRH---NALNASAAIAVATEDDISDEAILKAMAGTEGTGRRF 331


>gi|254441842|ref|ZP_05055335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
 gi|198251920|gb|EDY76235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
          Length = 465

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  ++   L               H G P+ L     ++  G+ +L  
Sbjct: 122 VIAVTGSNGKSTTSALIYHIL--------------EHAGRPVQLGG---NIGRGVLDLDE 164

Query: 170 SHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +H GE+       +   L R   P +AV T + P HL   +G     +AK  +F
Sbjct: 165 AHDGEVIVLELSSYQIDLARALTPDVAVFTNLTPDHLDRHAGHGGYFAAKRRLF 218


>gi|84490004|ref|YP_448236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373323|gb|ABC57593.1| predicted UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 479

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFE 166
           I ITGS GKTTT +MLT I  ++    Y C     N +    V   +    +  D  I E
Sbjct: 115 IGITGSFGKTTTTDMLTNIFKAAGYNVYQCSSMKWNLVSEAIVDDIVKGEYIGADIAILE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           L    LG    L   +   I V+T + P HL  F G +E+    KA I    +K
Sbjct: 175 LPHGTLG----LMGEIDLKIGVLTNLRPEHLCEFGGSMEKYVERKACILPASQK 224


>gi|86132605|ref|ZP_01051198.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
 gi|85816847|gb|EAQ38032.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
          Length = 445

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + ATI+ ITGS GKTTT  +    L          G    +IG          ++D  + 
Sbjct: 101 TDATIVGITGSNGKTTTTMLTGFILEQAGINLGVAG----NIGDSYAKMVAQKEIDTYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  + P HL  +    E   ++K  I    ++T  + 
Sbjct: 157 EISSFQLDGIADFA----PHIAVVLNVTPDHLDRYDYKFENYIASKFRIAMNQKETDYLI 212

Query: 225 LNYDD 229
            + DD
Sbjct: 213 YDADD 217


>gi|254387287|ref|ZP_05002546.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
 gi|194346091|gb|EDX27057.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
          Length = 465

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 21/207 (10%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
           +A    L IPV    D L  L        LR     IA+ G+ GKTTT  ML ++LS+  
Sbjct: 87  LARAAELGIPVVHRSDALAGLMD-----GLRP----IAVAGTHGKTTTTSMLAVSLSALG 137

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  +YA  G  +     P + A        G  ++ ++   E     H   P +A+I   
Sbjct: 138 LDPSYAIGGDLD----APGSNAH------HGEGDIFVAEADESDRSFHKYTPQVAIILNA 187

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H +N++ +EEI  +       +   GT+ + +  +    + A+        + ++G+
Sbjct: 188 ELDHHANYASMEEIYESFETFVAKVVPGGTLVVAHGQAGAAEIAARVAGNEGLRVVTYGE 247

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGK 279
            + AD ++ K       S + V + G+
Sbjct: 248 EEAADVRITKITPRGLTSEVTVVIDGR 274


>gi|75675245|ref|YP_317666.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
 gi|109892715|sp|Q3STS7|MURC_NITWN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74420115|gb|ABA04314.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
          Length = 467

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 36/299 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    +AI G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 100 LAELMRLKS---CVAIAGTHGKTTTTSMVATLLDAGDFDPTVINGGIINAYG---TNARL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               ++ + E   S    ++  T      +A++T +   HL +F   + +  A     E 
Sbjct: 154 GAG-EWMVVEADESDGTFLKLPTD-----VAIVTNVDAEHLDHFKTFDAVQDAFRSFVEN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + +  +   +  + I ++G++  AD +L         S  +V  
Sbjct: 208 VPFYGFAVMCIDHPVVQAMVGR---IEDRRIITYGQNPQADVRLVDLAPNGGGSHFKVMF 264

Query: 277 QGKSMEVVHH-------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +  H          G H A N    + +   L     T  KAL+ F    G  +R
Sbjct: 265 RNRKTDAAHEISDLVLPMPGPHNALNATAAIAVAHELGITDATIRKALAAFG---GVKRR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMC 379
           +         T+ID+ Y  +P  + A +          V++ + PH   R  A+  + C
Sbjct: 322 FTRTGEWNGVTVIDD-YGHHPVEIAAVLKAARESTDGRVIAVVQPHRYTRLQALFEEFC 379


>gi|85373184|ref|YP_457246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
 gi|84786267|gb|ABC62449.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
          Length = 459

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           FGV  ++G +   A A        +I ITG+ GK+TT  ++T  L    K          
Sbjct: 88  FGVP-IIGDIELFAQARSALPPHRVIGITGTNGKSTTTALVTHLL----KEAGVEARMGG 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IG+P+ L   P+  + G++ L +S   +I  LT  +    A +  I P HL  + G E 
Sbjct: 143 NIGLPI-LGEEPLP-EGGVYVLELSSY-QID-LTRSLACEAAALLNITPDHLDRYDGFES 198

Query: 206 IASAKAEIF 214
            A +K  +F
Sbjct: 199 YAFSKGRLF 207


>gi|325264801|ref|ZP_08131530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
 gi|324030093|gb|EGB91379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
          Length = 453

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 24/182 (13%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +   +IPV+G  ++          A +  K  ++AITG+ GKTTT  +L 
Sbjct: 81  VPTDLPIVNRMREKNIPVWGEIEL----------AYVTGKGDVLAITGTNGKTTTTALLG 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             + + +++   +G    +IG P T +A    D    + E+    L  I    H  RP +
Sbjct: 131 EIMKNYRESTFVVG----NIGNPYTSIALATRDDSVIVAEMSSFQLESI----HTFRPKV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  ++P HL+    +E    AK  I E   +  T  LNY+D   E+ +  +  +  K 
Sbjct: 183 SAILNVSPDHLNRHHTMEAYIDAKLNIAENQTEEDTCVLNYED---EMTRGFAEKVNAKV 239

Query: 247 IY 248
           +Y
Sbjct: 240 LY 241


>gi|257454702|ref|ZP_05619958.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
 gi|257448012|gb|EEV22999.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
          Length = 504

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 157/397 (39%), Gaps = 54/397 (13%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140
           IPV    D+LG L       R R     IA+ G+ GKTTT  +LT+ L+   +  TY  I
Sbjct: 123 IPVVRRADMLGEL------MRYRHG---IAVAGAHGKTTTTSLLTMILTEAGLDPTY-VI 172

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G   N  G   +L +         + +  +   +  FL+  +RP  A++T I   H+  +
Sbjct: 173 GGKLNASGKNASLGQ-------SRYLVAEADESDASFLS--LRPMAAIVTNIDQDHMETY 223

Query: 201 SG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
            G  +++ +A  +  + +   G   L  DD     L  K      + + ++G  K+ D Q
Sbjct: 224 GGSFDKLKAAYVQFLQNMPFYGLAVLCGDDKELYGLIDKI----ARPVLTYGLEKHNDVQ 279

Query: 260 -LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +      ++  +  ++   + + +  +  G H   N L  + I +      +   +A+ 
Sbjct: 280 AIDVVADGTKTHFTVLRKDREPLPITLNIPGIHNVYNALAAITISTDEGVSDEAICQAVK 339

Query: 319 VFHPKEGRGKRYRCALN------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            F    G G+R+    N       G   LID+ Y  +P  +   I    Q  P    RR+
Sbjct: 340 KF---AGVGRRFENNGNYPVKDGAGDVLLIDD-YGHHPTEVAMTIKAARQSYPD---RRL 392

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVHYS 427
            ++            F  D  +VLS  ++     V+ +G  V+   D  +L R+I     
Sbjct: 393 VMIFQPHRFTRTRDCFD-DFVDVLSQVDVLMLLDVYSAGEAVIEGADSRSLARTIRTRGQ 451

Query: 428 --------ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                     MD +   + S L   D+++ + + + G
Sbjct: 452 VEPIMLNINDMDQIRQVLGSMLKGNDLLITQGAGNVG 488


>gi|229514029|ref|ZP_04403491.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
 gi|229349210|gb|EEO14167.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
          Length = 506

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGERPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
 gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
          Length = 525

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S+DSRS+ P + + A+ G    G +F   A  +GA + + +        +  +P  
Sbjct: 40  LRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGAAMALTDPAGRERCEAAGLPAL 99

Query: 87  GVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            VDD     AL    V  R   +   I +TG+ GKT+    +T AL  +      IG+
Sbjct: 100 VVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSVTTAITRALLELGVPAGAIGT 157


>gi|51246749|ref|YP_066633.1| UDP-N-acetylmuramate-alanine ligase [Desulfotalea psychrophila
           LSv54]
 gi|59798231|sp|Q6AJ54|MURC_DESPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50877786|emb|CAG37626.1| probable UDP-N-acetylmuramate-alanine ligase [Desulfotalea
           psychrophila LSv54]
          Length = 459

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 134/359 (37%), Gaps = 55/359 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVF 86
           D RS A  +    +    Y+GH     A   GA +VV ++ +      V       IPV 
Sbjct: 36  DLRSSATTKRLQDLGATIYEGHQ---AASCAGASVVVTSSAVAEDNPEVVQAREDKIPVI 92

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNN 145
              ++L  L        +R K   IA+ GS GKT+T  ++   LS         +G   +
Sbjct: 93  PRAEMLAEL--------MRLKTFGIAVAGSHGKTSTTSLIGCLLSQTGFDPTIVVGGKVD 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             G    L         G F +  +   +  FL   + P + V+T I   HL  ++ IE 
Sbjct: 145 SFGGNAKLGE-------GDFLVAEADESDGSFLK--LSPVLEVVTNIDLEHLDYYTDIEH 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I        + +   G   +  DD     +  +      K + ++G +  AD      + 
Sbjct: 196 IKETFLSFIDKIPFYGAAIVCLDDENVAAILPQVQ----KRLITYGLTPQADVSADNLRF 251

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF---- 320
            + +S   V+  G+ + E+     G H   N L  + I   L         AL+ F    
Sbjct: 252 AAGRSTFRVRAAGEVLGEISVFPSGTHNVYNALAAVAIGLELEIPFGKIATALASFGGVQ 311

Query: 321 ----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
               H  EG+G            T+ID+ Y  +P  ++A++  + +  P    +R+ VL
Sbjct: 312 RRMQHKGEGKG-----------ITVIDD-YAHHPTEIRASLKAIKETWPE---KRLVVL 355


>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
 gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
          Length = 451

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +V+G +   A A + RS   +I ITGS GK+T   ++     +    YA  G    +IG+
Sbjct: 94  EVIGDVELFARAIKDRSPC-VIGITGSNGKSTVTTLVGEMAKAAGLNYAVGG----NIGI 148

Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P L L + P  VD  I EL    L      TH +    A    I+  H+  +S +E    
Sbjct: 149 PVLDLLQKP--VDLYILELSSFQLET----THSLNCISATCLNISEDHMDRYSDLEAYRQ 202

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE 233
           AK  ++   +++     N +DS  +
Sbjct: 203 AKLALY---DQSKRALFNREDSLTQ 224


>gi|227878134|ref|ZP_03996113.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256850137|ref|ZP_05555567.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047700|ref|ZP_06020653.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
 gi|227862261|gb|EEJ69801.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256713109|gb|EEU28100.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|260571985|gb|EEX28552.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 99/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG      GV         D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGRGK-GV--------ADSRFFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F    +  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G     DFQ    K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D   + +  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIREGMLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|116629840|ref|YP_815012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238853968|ref|ZP_04644325.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311110519|ref|ZP_07711916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
 gi|122273222|sp|Q042P8|MURD_LACGA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116095422|gb|ABJ60574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833413|gb|EEQ25693.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311065673|gb|EFQ46013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
          Length = 460

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 42/258 (16%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA 129
           MV     L+IPV    ++  ALN         S+A  + +TGS GKTT    T+ ++   
Sbjct: 89  MVEKALKLNIPVITEPEI--ALN--------VSEAPYVCVTGSNGKTTTVMLTQRIMDHH 138

Query: 130 LSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           LS        +G    +IGVP++ +     D D  + E+    L  +      ++P +A 
Sbjct: 139 LSKNGGHAYAVG----NIGVPISEVVEKATDKDLLVVEMSSFQLLGVT----DIKPKVAA 190

Query: 189 ITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKSHALGI 244
           I  I    HL      +    AK  I +  ++      N+D       EL K K+     
Sbjct: 191 IVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQNDYFIANFDQKNILDRELKKTKAK---- 246

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
             + +F ++ K AD+ +          ++E +   + M++    I G H  QN L+ + I
Sbjct: 247 --VQTFSETDKTADYFIG-------DEYLESKDDHQIMKISDIKIPGIHNQQNCLVAIAI 297

Query: 303 VSILTADVDTAIKALSVF 320
             ++ AD      ALS F
Sbjct: 298 SKLMGADDSDIQYALSTF 315


>gi|329766939|ref|ZP_08258467.1| hypothetical protein HMPREF0428_00164 [Gemella haemolysans M341]
 gi|328837664|gb|EGF87289.1| hypothetical protein HMPREF0428_00164 [Gemella haemolysans M341]
          Length = 433

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 20/165 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---NNHIGVPLTLA-RMPVDVDFGIF 165
           I+ +TG+ GKTTT  ++   L +  + +  I ++   N   G+  T A +   D    I 
Sbjct: 49  IVFVTGTNGKTTTSNLIGHTLKTAGENF--INNFEGANMLDGIISTFAIQAKNDTKLAII 106

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+     G IR +   + P   VI       +  F  I+ + +   E  EG  K   + L
Sbjct: 107 EIDE---GSIRRVMKYITPTKFVINNFFRDQIDRFGEIDTLIATIGEQLEG--KNIQLIL 161

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQC 266
           N DD F     A+    G   IY FG SK+A    DF + + K C
Sbjct: 162 NSDDPFV----ARLSKYGEDNIY-FGISKDAYKFSDFGISESKFC 201


>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
 gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
          Length = 487

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 142/381 (37%), Gaps = 47/381 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVAS 77
           IG + Q  V+ I+ DSR       F A++G   DGH +I  A  +G    VV +      
Sbjct: 16  IGNIEQE-VSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVVEDLPDEKP 74

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            G   + V    + L +L         R   T++ +TG+ GKTT   +L      +    
Sbjct: 75  EGCCFVQVSDTAEALASLASAYYGHPSRH-LTLVGVTGTNGKTTVATLLYRLFRKMGYKA 133

Query: 138 ACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLG-EIRFLTHLVRPHIA------- 187
             + +  N++      T    P  +        M+  G E  F+   V  H A       
Sbjct: 134 GLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFME--VSSHAAAQKRIGA 191

Query: 188 ------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
                 + T +   HL     + E   AK   F+GL       +N DD    ++   + A
Sbjct: 192 LDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNADDKNGLVMVQNTRA 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-----EVVHHGIGYHMAQNM 296
                + ++     A+++ +          +E  + G  M     EV    +G   A N+
Sbjct: 252 ----RVCTYALKSMANYRAK---------IVERHIDGMDMYMDDREVFVRLVGDFNAYNL 298

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L   G    L  D +  ++ LS     +GR + +      G+  ++D ++  +     A 
Sbjct: 299 LCVYGASCELGQDREEVLRILSELTSVDGRFQTF--TSKDGYVAIVDYAHTPD-----AL 351

Query: 357 ISVLSQISPHGEGRR-IAVLG 376
           I+VL  I P  +  + I V+G
Sbjct: 352 INVLDTIRPLAKSHKVITVVG 372


>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 680

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 79  GSLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKT 136
           G   +P+  V+DV  AL  +A V     SKA T IA+TGSVGKTTT  ++          
Sbjct: 175 GLADVPIAVVEDVDEALADIARVFYGDPSKALTAIALTGSVGKTTTSYLVKAVFEEADIR 234

Query: 137 YACIGSYNNHIGVPLTL 153
              +GS  N++G  L L
Sbjct: 235 MGLVGSNGNYVGDELKL 251


>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 491

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASI 78
            P+  V G++ ++    P   F A++G   DGH FI  A ++GA  V+   + T +  ++
Sbjct: 18  TPEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLGEGLPTGVQTTL 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             L +P         A       +R      ++ +TG+ GKTTT
Sbjct: 78  PYLQVPDARAALADLAAELHGHPSR---DLKVVGVTGTDGKTTT 118


>gi|332974212|gb|EGK11145.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella kingae ATCC 23330]
          Length = 468

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 139/368 (37%), Gaps = 46/368 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IAI G+ GKTTT  +    +  + +  T+         IG  LT A     +  G + + 
Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTFV--------IGGKLTAAGTNAKLGKGEYLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +   +  +  A  +    +   G  FL  
Sbjct: 160 EADESDASFL--YLSPVITVITNIDEDHMDTYGQDVNRLHQAFIDFVHRMPFYGKAFLCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQG----KSM 281
           D      + +K     IK  ++     N  AD      +    Q    V  +     +S 
Sbjct: 218 DSEHVRTILSK-----IKKPFATYAIDNDQADIYATNVQTNGAQMQFTVNFRHESSLQSF 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQG 337
           +V  +  G H   N L ++G+     A V    + L+ F    G G+R++     AL QG
Sbjct: 273 DVTLNLPGRHNVLNALASIGVALECKAPVAAIQQGLANF---AGVGRRFQSYGEIALPQG 329

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+ + Y  +P  M A I+      P+       VL         ++       +VLS
Sbjct: 330 GKALVIDDYGHHPVEMAATIAATRGAYPNNR----LVLAFQPHRYTRTKDLFYQFVDVLS 385

Query: 398 LYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   +   +A  L  ++         Y   ++ L   + S L DGDV
Sbjct: 386 TADRVVLTEVYAAGEAPIPDANAHSLANAVRARGLVEPIYCADINALPSILLSVLKDGDV 445

Query: 447 VVVKSSNS 454
           V+   + S
Sbjct: 446 VLTMGAGS 453


>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 641

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
          ++A  G +I +  Q  VN +SIDSR +     F A+ G   DGH +   A+ +GA  VV+
Sbjct: 27 IEATNGVAIRLAMQ--VNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVL 84


>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
 gi|189430348|gb|EDU99332.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
          Length = 444

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGLNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAECNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDYKMQNYVDAKFRI 201

Query: 214 FEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
            +   +    IF N D     +++ + H  GI    Y F + K
Sbjct: 202 IQNQTDNDAFIFWNDD----PVIQKELHKYGIHGHYYPFAEKK 240


>gi|170768370|ref|ZP_02902823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
 gi|170122474|gb|EDS91405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDAECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +AK  I++  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRTAKLRIYDNAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|159044992|ref|YP_001533786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Dinoroseobacter shibae DFL 12]
 gi|189082879|sp|A8LS92|MURD_DINSH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157912752|gb|ABV94185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dinoroseobacter
           shibae DFL 12]
          Length = 464

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 14/108 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GK+TT  ++   L++  +     G+          + R  +D+D G  + G+
Sbjct: 122 VIAVTGSNGKSTTSALIHHVLTAAGRPTQLAGN----------IGRGVLDIDPGE-DGGI 170

Query: 170 SHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             L    + T L R   P IAV T ++P HL    G+    +AK  +F
Sbjct: 171 VVLELSSYQTELARALTPDIAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218


>gi|320531620|ref|ZP_08032562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320136149|gb|EFW28155.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 519

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + +TG+ GKTTT  ML+  L++   T   +G    +IG P+  A +    D    EL   
Sbjct: 139 LTLTGTDGKTTTVSMLSTILAAQGLTAPAVG----NIGTPVIEAVLSGSADALAVELSSF 194

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            L   R L     P  +    +A  HL    G+E  A  KA ++ G
Sbjct: 195 QLHTTRTLA----PLASTCLNLAADHLDWHGGLEAYARDKARVYSG 236


>gi|238752432|ref|ZP_04613909.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709365|gb|EEQ01606.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 507

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 138 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 177

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G    +          
Sbjct: 178 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFGNLKQTFINFLHN 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 237 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 292

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + D  ++AL+ F   +G G+R+    N
Sbjct: 293 LDKPLMTVTLNAPGRHNALNAAAAVAVATEEGIEDDDILRALAGF---QGTGRRFDFLGN 349

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A I 
Sbjct: 350 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIK 380


>gi|227327093|ref|ZP_03831117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 153/367 (41%), Gaps = 56/367 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVVPRVVDTRISPP---GLDKLPEQVERHLGSLNED 61

Query: 69  -VVNTDM-VASIG-SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +++ D+ VAS G +L+ P+     D  +  +  + +  R  ++A I+AITGS GK+T  
Sbjct: 62  WLMSADLIVASPGVALATPILCDAADAGIEIVGDIELFCR-EAQAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  +  + +          +IG+P L L   P      + EL    L      T  +
Sbjct: 119 --VTTLVGEMARAAGWQVGVGGNIGLPALQLLEQP--AQLYVLELSSFQLE----TTSSL 170

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---AK 238
               A I  +   H + +  G+++  +AK  I+   E      +N DD+    ++   A+
Sbjct: 171 HAAAATILNVTEDHTNRYPFGLQQYRAAKLRIY---EHADLCVVNADDALTMPVRGADAR 227

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
             + G+            D+ L + +    ++W+ V     L  + +++V    G H   
Sbjct: 228 CRSFGVDV---------GDYHLNRQQG---ETWLRVDGERVLNTREIKLV----GQHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +A+ AL+ F    G   R++ A  +     I++S   N  S +
Sbjct: 272 NALAALALADAVKIPRSSALTALTSF---TGLPHRFQMAFERNGVRWINDSKATNVGSTE 328

Query: 355 AAISVLS 361
           AA+S L+
Sbjct: 329 AALSGLA 335


>gi|261855072|ref|YP_003262355.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
 gi|261835541|gb|ACX95308.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
          Length = 491

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 103/263 (39%), Gaps = 26/263 (9%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  +L   +A +    TY         IG  L  +     +  G + + 
Sbjct: 128 LAVAGTHGKTTTTSLLAAILAEAGWDPTYV--------IGGKLLSSSSNARLGRGEYLVA 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +PH+A++T I   HL  + G  E +     E    L   G   L  
Sbjct: 180 EADESDASFL-HL-QPHVAIVTNIDADHLETYDGNFERLVDHFIEFLHNLPFYGLAVLCA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A+      + + ++G  + AD +          S   V L  ++       
Sbjct: 238 DDPVAAGITARVG----RQVLTYGIDQPADVRATDVYSDGFGSRFVVNLPNQTQFDCRLA 293

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
           + G H   N L  + +   L   V    +AL+ F   +G G+R       A+      LI
Sbjct: 294 MPGRHNVLNALAAITVAQDLGVPVAAIQQALTSF---QGVGRRLERRGALAIKGKKLPLI 350

Query: 343 DESYNANPASMKAAISVLSQISP 365
           D+ Y  +P  ++A +  +    P
Sbjct: 351 DD-YGHHPREVEATLQAVRAAWP 372


>gi|118137669|pdb|2F00|A Chain A, Escherichia Coli Murc
 gi|118137670|pdb|2F00|B Chain B, Escherichia Coli Murc
          Length = 491

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 17/222 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT    T  +SSI        ++ N  G  +  A +   +  G + +  +
Sbjct: 122 IAIAGTHGKTTT----TAXVSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +  FL HL +P +A++T I   H   + G  E +          L   G      DD
Sbjct: 176 DESDASFL-HL-QPXVAIVTNIEADHXDTYQGDFENLKQTFINFLHNLPFYGRAVXCVDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
                L  +   +G +T  ++G S++AD ++  ++Q   Q    +  Q K    V  +  
Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPXRVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           G H A N    + + +    D +  ++AL  F   +G G+R+
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328


>gi|228472694|ref|ZP_04057454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276107|gb|EEK14863.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 444

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A+R  + A IIAITGS GKTTT  ++   L     + A  G    +IG      
Sbjct: 89  ISEIEFASRY-TDAKIIAITGSNGKTTTTTLVYHLLKEAGLSVAVGG----NIGYSFARL 143

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + E+    L +I        PHIA++  I P HL  ++   +    AK  I
Sbjct: 144 VAQEPKEYYVLEISSFQLDDITSF----HPHIALLLNITPDHLDRYNYEFQNYIDAKMRI 199

Query: 214 FEGLEKTGTIFLNYDD 229
            E  +    +  + DD
Sbjct: 200 TEFQQAADFLIYDADD 215


>gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate
          ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 495

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR+ A  + F AIKG   DG  FI  A+ +G   V+   +  A+ G + 
Sbjct: 18 PERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGAANDGQIV 77

Query: 82 ---SIPVF 86
              +PV 
Sbjct: 78 EMHGVPVI 85


>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
 gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
          Length = 452

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +IAITG+ GKTT    +T  +  I K          +IG+P+  A M    D  + 
Sbjct: 109 TSAKVIAITGANGKTT----VTTLVGEICKAAGLKTIVAGNIGLPVLDALMMETPDVYVL 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  ++   A +  ++  H+  ++  ++ A AKA IF   +      L
Sbjct: 165 ELSSFQLET----TSNLQIDAATMLNLSEDHMDRYASFQDYAIAKARIFYNAKLQ---VL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           N DD++  ++     A       +FG   + +      KQ    +W+
Sbjct: 218 NRDDAWSMMMARPKLAQ-----VTFGLDDDGEETSYGLKQVDGDTWL 259


>gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate
          ligase [Erwinia amylovora CFBP1430]
 gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Erwinia amylovora ATCC 49946]
 gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate
          ligase [Erwinia amylovora ATCC 49946]
 gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate
          ligase [Erwinia amylovora CFBP1430]
          Length = 495

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR+ A  + F AIKG   DG  FI  A+ +G   V+   +  A+ G + 
Sbjct: 18 PERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGAANDGQIV 77

Query: 82 ---SIPVF 86
              +PV 
Sbjct: 78 EMHGVPVI 85


>gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
          Length = 488

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 147/396 (37%), Gaps = 45/396 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T HD   A QG  +  V QG V+ ++ DSR       F A+ G   DG  ++  A++KG 
Sbjct: 4   TLHDN-AAFQG-LLDAVRQGGVD-VAADSRRATSGGVFVAMAGSRDDGARYVADALEKGV 60

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122
             VV         G+ +  +  VDD   A      AAR  ++     ++A+TG+ GKTT 
Sbjct: 61  AFVVAAPGHDLPAGTTAR-LVAVDDPQ-AALGALAAARFGTETMAMPVVAVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGS---------YNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
             ++     +   T   +G+         ++  +  P  LA   +  +          L 
Sbjct: 119 SYLIERLAQAAGHTVGVLGTVAYRWPGVVHDATLTTPDCLA---IHENLAAMARSGCTLA 175

Query: 174 EIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIF 224
            +   +H +            A  T +   HL     +     AKA++F   L +  T  
Sbjct: 176 VMEASSHALDQDRLAGLSFAAAAFTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAV 235

Query: 225 LNYDDSF-FELLKAKSHALGIKTIY---SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            N+DD++  +LL     A+G         FG+  +   Q        E   +       S
Sbjct: 236 FNFDDAWGLKLLHEFPQAIGYGLTVPPTGFGRLLSGHVQ----HHGREGQDILAAYGDDS 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G H AQN+L   G+   L    +T   AL+  H   GR +R      +  F 
Sbjct: 292 YAVATPLPGRHNAQNVLAACGVALALGWPAET-FAALADCHGAPGRLERIPNPSGRAVFV 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                Y   P +++   +VLS       GR   V G
Sbjct: 351 ----DYAHTPDALE---NVLSAAREFTAGRLFVVFG 379


>gi|197302584|ref|ZP_03167639.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
 gi|197298482|gb|EDY33027.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
          Length = 457

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
           RP ++ I  I P HL+    +E   +AK  I +   +  T  LNY+D+    F E LKAK
Sbjct: 183 RPRVSAILNITPDHLNRHHTMEAYIAAKENIAKNQTEEDTCVLNYEDAVTRQFGETLKAK 242


>gi|229820895|ref|YP_002882421.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
 gi|229566808|gb|ACQ80659.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
          Length = 473

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
           L++ A  AR+ ++  ++A+ G+ GKTTT  ML +AL+       A IG+         + 
Sbjct: 88  LHRSAALARIANERELVAVAGTHGKTTTSAMLAVALTEAGLDPTAAIGAVVRDWS---SG 144

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           AR    V  G   +  +   +  FL +   P +AV+T I   HL +++  + +  A  E 
Sbjct: 145 AR----VGAGRVFVAEADESDSSFLAYA--PRVAVVTNIEADHLDHYADTDALVEAFREF 198

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              +   G +    DD     L   + A GI+ + ++G
Sbjct: 199 ARRIVSGGLLVACADDPGSLELARWATAQGIR-VRTYG 235


>gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 875

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 106 SKATI--IAITGSVGKTTTKEML---------TIALSSIKKTY---ACIGSYNNHIGVPL 151
           SKATI  I++TG+ GKTTT  M+         T+ ++S    Y    CI   +N      
Sbjct: 474 SKATIPIISVTGTNGKTTTVRMISQILKMYGYTVGMTSTDGIYVDDVCIYKGDNSGPKSA 533

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASA 209
                  ++D  + E      G +R         + +IT I+  HL       +E++A  
Sbjct: 534 RTCLADKNIDAAVLETARG--GIVREGLGYDLADVGIITNISEDHLGIDGIETLEDLAFV 591

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           K+ + E ++K G   LN DD     +  ++     K IY
Sbjct: 592 KSLVVEAVKKDGYSVLNADDPMTPYISKRAKG---KIIY 627


>gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 495

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 150/381 (39%), Gaps = 54/381 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+ +DSR++A  +AF AI G    G  F+  A   GA  V+       +   L +PV 
Sbjct: 22  VSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVLFEP---PAPDGLPVPVD 78

Query: 87  GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V G   +L V A     R      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 79  AI-AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185
           +    +GV L  A +P      +     + L ++R      +   V  H           
Sbjct: 138 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237
             +AV T +   HL     + +  +AKA++F   GL+      +N DD F    F  L  
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDGFGRTLFASLDP 250

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQN 295
              A+G+ +        +AD  +       + + +   + ++G+   V    +G     N
Sbjct: 251 VLRAIGVSS------RAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDN 304

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L   G +  L          L    P  GR  R   A       L+   Y   P +++ 
Sbjct: 305 LLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQ 361

Query: 356 AISVLSQISPHGEGRRIAVLG 376
           A+S L     H + R I V G
Sbjct: 362 ALSSLRS---HAQDRLICVFG 379


>gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 467

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 97/262 (37%), Gaps = 35/262 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT    T  ++ I K          +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTT----TALIAHIIKASGRDMQLGGNIGTAILTLEPPQANRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     +E  A+ K  +   +  + T  +  DD 
Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASDTAIVGVDDD 225

Query: 231 FFE-----LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + E     L +   H + I      GK   AD     W Q  E   +       S+E + 
Sbjct: 226 YCEAIADRLYRDGVHVVRISKERHLGKGYFADGAKLLWSQDGEIDEI------ASLEGIG 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              G H AQN L    +V+ L+      ++D  +K+        G   R     ++G   
Sbjct: 280 SLRGAHNAQNALAA--VVACLSVGLSLEEIDAGLKSFP------GLAHRMEQVGHRGKVL 331

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            +++S   N  +   A+S   Q
Sbjct: 332 FVNDSKATNAEATAPALSSFLQ 353


>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae 642]
          Length = 448

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA +IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  D++  +
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDIELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
 gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
          Length = 459

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 37/270 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFE 166
           II+ TG+ GKTTT   +   L+         G+         + A++  D   +D+ + E
Sbjct: 94  IISFTGTNGKTTTSTKMAELLNFAGFRAKLAGN------AGFSFAKLVADEEELDYIVLE 147

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-- 224
           L    L         +  +IA I  + P HL+ +  +E+    K  IF+  ++TG  F  
Sbjct: 148 LSSYQLEN----NPQIHSNIAGIINLTPDHLTRYESVEDYYITKFAIFD--KQTGDDFAL 201

Query: 225 LNYDDSFF-ELLKAK--SHALGIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEVQLQ 277
           +N DD  F EL + +  +  +  + +Y   ++K   F     +R  K  S++   E+Q  
Sbjct: 202 INLDDEVFAELYERREINEKMKAQKVYLSKETKGTVFVYENNIRIMKDLSKR-IDEIQNF 260

Query: 278 GKSMEVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           G+ ++ +   +         G H  +NML  +    IL    +   + L   +  E R +
Sbjct: 261 GEKIDEISEILLKTEELSLKGRHNLENMLFLISSAKILNVKNEKLAEFLKSTNALEHRLE 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +    N  F   I++S   N  S   AI 
Sbjct: 321 NFFVKGNTAF---INDSKGTNVESTLKAID 347


>gi|75675242|ref|YP_317663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           winogradskyi Nb-255]
 gi|118595669|sp|Q3STT0|MURD_NITWN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74420112|gb|ABA04311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           winogradskyi Nb-255]
          Length = 466

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR    A  IAITG+ GK+TT    T  ++ + +          +IG  +     P    
Sbjct: 108 ARHAPDAPFIAITGTNGKSTT----TALVAHLMREAGYDVQMGGNIGTAILSLEPPRRGR 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    +     L   + P + ++  ++P HL     IE  A  K  +  G++  G
Sbjct: 164 VHVIEMSSYQID----LAPSLDPTVGILLNLSPDHLDRHGTIEHYAQVKERLIAGVQPQG 219

Query: 222 TIFLNYDDSFFELLKAKSHALG 243
           T  +  DD +   +  +    G
Sbjct: 220 TAVVGVDDHWCAAIADRQEQAG 241


>gi|109899822|ref|YP_663077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
 gi|109702103|gb|ABG42023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
          Length = 441

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 40/296 (13%)

Query: 110 IIAITGSVGKTTTKEM-LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+TGS GK+T   +   + L++ KK  A +G    +IG+P  L  +  D D  + EL 
Sbjct: 105 VLAVTGSNGKSTVATLAYEMCLAAGKK--ALLGG---NIGIP-ALELLEKDADIIVLELS 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ +RPH+A +  ++  HL     +     AK  I+     +     N D
Sbjct: 159 SFQLET----TYTLRPHVACMLNLSDDHLDRHGDMLSYQRAKLRIYRDARFS---VCNRD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287
           D       A +  + I     FG S +   +   W + +      + L GK     H   
Sbjct: 212 D-------AATWPMTINPDVMFGLSSSE--RGLSWNKDTAH----ILLDGKDFLDSHACM 258

Query: 288 -IGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            +G H   N+     +  +   D+ TAIK A + F    G   R +          I++S
Sbjct: 259 LVGEHNMLNIQAATAMAMLAGIDL-TAIKLAATSF---AGLAHRCQTVAVSHHVRWINDS 314

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSL 398
              N   + A I+ +  +SP  +G+ I +    G   +   L + F++ + E+++L
Sbjct: 315 KATN---VGATIAAIDGLSPTCKGKLILIAGGDGKGADFSPLEERFNVQVNELITL 367


>gi|294501413|ref|YP_003565113.1| folylpolyglutamate synthase [Bacillus megaterium QM B1551]
 gi|294351350|gb|ADE71679.1| folylpolyglutamate synthase [Bacillus megaterium QM B1551]
          Length = 432

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 32/223 (14%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLE 218
           VD+ +FE G   LG     T++V P +++IT I   H++     +EEIA+ KA I +   
Sbjct: 139 VDYAVFETG---LGGRYDSTNVVNPMVSIITNIGFDHMAILGDTVEEIAAEKAGIIKKEV 195

Query: 219 K--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              TG   +   D   E  K+K  +L     +  GK    DF ++ ++  +      +++
Sbjct: 196 PIITGAEQVKALDVITEEAKSKQASL-----FVLGK----DFDIKNYEPLANGEGFALKM 246

Query: 277 QGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
              + E +  + +GYH  +N  + +  V  L        K LS+   +  +G ++     
Sbjct: 247 PYGTFEHLELNMLGYHQVKNAALAVMAVCYLKEK-----KKLSISKEQMIKGIQHTKWNG 301

Query: 333 ---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +N+   T+ID ++NA     +   S+LS +  H E R I
Sbjct: 302 RFEIVNEHPLTIIDGAHNA-----EGIDSLLSTLRLHYEDRSI 339


>gi|153830363|ref|ZP_01983030.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
 gi|148874170|gb|EDL72305.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
          Length = 403

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 145/377 (38%), Gaps = 65/377 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 42  IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 91

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 92  ---IAEADESDASFL-HL-QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 146

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281
             L  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +GK+ +
Sbjct: 147 AILCIDDPVIRELIPRVS----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANL 202

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCALN 335
           ++  +  G H   N L     +++ T D   D AI  L      +G G+R+         
Sbjct: 203 DITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFETG 257

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELS 385
            G   L+D+ Y  +P  +   I                 PH   R   +  D   + E  
Sbjct: 258 NGVAMLVDD-YGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLE-- 314

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLFIQS 439
               +D+  +L +Y      ++G    +L   + RS      I V  S+T+  +   I  
Sbjct: 315 ---QVDVLLMLDVYAAGEKPIAGADGRSLCRTI-RSRGKIDPIFVPDSQTLPSVLANI-- 368

Query: 440 SLVDGDVVVVKSSNSCG 456
            L DGD+V+ + +   G
Sbjct: 369 -LQDGDLVLTQGAGDVG 384


>gi|262189738|ref|ZP_06048096.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034382|gb|EEY52764.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 145/372 (38%), Gaps = 55/372 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L          
Sbjct: 42  IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 91

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              +  +   +  FL HL +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 92  ---IAEADESDASFL-HL-QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 146

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281
             L  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +GK+ +
Sbjct: 147 AILCIDDPVIRELIPRVS----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANL 202

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCALN 335
           ++  +  G H   N L     +++ T D   D AI  L      +G G+R+         
Sbjct: 203 DITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFETG 257

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A V
Sbjct: 258 NGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFANV 312

Query: 396 LSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDG 444
           L   ++     V+ +G   +A  D       +     +D +F+         + + L DG
Sbjct: 313 LEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDG 372

Query: 445 DVVVVKSSNSCG 456
           D+V+ + +   G
Sbjct: 373 DLVLTQGAGDVG 384


>gi|209696051|ref|YP_002263981.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
 gi|226706336|sp|B6ELH4|MURC_ALISL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|208010004|emb|CAQ80327.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
          Length = 487

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 55/372 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  + T   S   +  T+   G   N      T AR+        F + 
Sbjct: 125 IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNGGLVKN----AGTNARLGS----SRFLIA 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P ++++T I   H+  + G  E +     +    L   G   +  
Sbjct: 177 EADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGQAVMCI 234

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
           DD    ELL   S     + + ++G S +AD +L  ++Q  ++S+  VQ + ++ +++V 
Sbjct: 235 DDDVVRELLPRVS-----RQVITYGFSDDADVRLINYRQEGQKSFFTVQRKDRTDLDIVL 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPKEGRGKRY----RCALNQGFFT 340
           +  G H A N    + + +    DV D+AI  LS     EG G+R+          G   
Sbjct: 290 NIPGKHNALNATAAIAVAT--EEDVEDSAI--LSALLNFEGAGRRFDQLGEFETGNGHAM 345

Query: 341 LIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           L+D+ Y  +P  +   I                 PH   R   +  D   + +     ++
Sbjct: 346 LVDD-YGHHPTEVDVTIKAARAGWEDKRLVMIFQPHRYSRTRDLYDDFANVLD-----NV 399

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           D+  +L +Y+     ++G    A   AL R+I         +  T+D L   + + + + 
Sbjct: 400 DVLIMLDVYSAGEKPIAG----ADGRALCRTIRARGKLDPIFVPTIDALPSVLANIIQNN 455

Query: 445 DVVVVKSSNSCG 456
           D+V+ + +   G
Sbjct: 456 DLVLTQGAGDVG 467


>gi|296284500|ref|ZP_06862498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           FGV  V+G +   A A        ++ ITG+ GK+TT    T     I KT     +   
Sbjct: 88  FGVP-VIGDIELFAQAREHLPPHKVVGITGTNGKSTT----TALTHHILKTAGVPTTMGG 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IG+P+ L + P+  + G++ L +S   +I  LT  +   +AVI  I P HL  +   E 
Sbjct: 143 NIGLPI-LGQEPLP-EGGVYVLELSSY-QID-LTFSLDCDVAVILNITPDHLDRYESFEA 198

Query: 206 IASAK 210
            A AK
Sbjct: 199 YAEAK 203


>gi|310814884|ref|YP_003962848.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
 gi|308753619|gb|ADO41548.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
          Length = 470

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 11/190 (5%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE +     +    +   G   L  D      L A+   +  +
Sbjct: 187 IAIVTNIDPEHMEHWGTIEALRKGFTDFVTQIPFYGLAVLCTDHPEVRALAAR---VTDR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + +FG +++AD +         Q+  ++ L  G          G H   N L  + +  
Sbjct: 244 RVVTFGFNEDADIRAVNLTYEKGQAHFDIALPDGVIAGCTLPMPGDHNVSNALAAVAVAR 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D D    AL+ F    G G+R+         T+ID+ Y  +P  + A +    Q +
Sbjct: 304 HLGMDHDAISAALAGF---AGVGRRFTKVAEVDGITIIDD-YGHHPVEIAAVMRAARQAT 359

Query: 365 PHGEGRRIAV 374
               G+ +AV
Sbjct: 360 ---SGKVVAV 366


>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Geobacter sp. M21]
 gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
          Length = 505

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          +  +  DSR +AP   FFA++G   DG +F+  AV+ GA  +V +
Sbjct: 23 IESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGGAVAIVAD 67


>gi|303242183|ref|ZP_07328672.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
 gi|302590265|gb|EFL60024.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
          Length = 882

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 33/211 (15%)

Query: 186 IAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF--FELLKAKSHA 241
           + VIT ++  HL        E++ASAK+ + E ++  G   +N DD F  + + +AKS  
Sbjct: 568 VGVITNVSEDHLGIDGVDTAEDLASAKSLVIEAVKPKGYAVINADDGFARYFMDRAKSKV 627

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +       F K K++       +    Q    V L G  + +V  G+   +A+   + + 
Sbjct: 628 I------LFSKDKHSSI----MQDHISQGKRAVYLDGGEIFLVKKGVTIQLAKTKDIPIT 677

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---------NQGFFTLIDE-------S 345
              IL  +++  + A+S     +   +  +  L         N G F + D         
Sbjct: 678 FGGILECNIENCLAAVSALWGLDMPLETIKAGLVSFLPDTSSNPGRFNIFDMGEFKVMLD 737

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y+ NPA  +  I  + ++  +   R + ++G
Sbjct: 738 YSHNPAGFEEVIKFVKKLEAN---RLVGIIG 765


>gi|269468108|gb|EEZ79818.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 471

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 107/274 (39%), Gaps = 30/274 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS  +   TY  IG   N  G+   L     + D+ I E  
Sbjct: 115 IAVAGTHGKTTTTSLIAHILSEARLDPTY-IIGGILNSSGINAKLG----ESDYLIAEAD 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL HL +P ++VIT I   H+S + +  + +  A       L   G   L  
Sbjct: 170 ES---DASFL-HL-QPMLSVITNIDQDHMSTYGNDYQNLKDAFVSFTSNLPFYGACVLCM 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVH 285
           DD     +    H    + + ++G     D + +  KQ   Q   +V      K   V  
Sbjct: 225 DDVGATDIMNNIH----RPLITYGFDSKVDIRAKNIKQHGMQMHFDVVCDKYNKPFSVEL 280

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTL 341
           + IG H   N L  + I   L   V     AL+ F    G  +R        +N     L
Sbjct: 281 NLIGKHNILNTLAAIAIACELKIKVSAIQSALNNF---SGVARRLEHHGTLNINNKQVLL 337

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            D+ Y  +P  + A    L    P+   +R+ V+
Sbjct: 338 FDD-YGHHPNEINAVFESLQNTYPN---KRLVVI 367


>gi|227486694|ref|ZP_03917010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235282|gb|EEI85297.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 449

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 34/247 (13%)

Query: 88  VDDVLGALNK-------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            DD++  L K       + V+ RL      IAITG+ GKT+T  M+   L+   K    +
Sbjct: 77  TDDIVQILEKDNEIISDIEVSQRLFPDREKIAITGTNGKTSTTSMVAHILNECGKPAYAV 136

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           G+     GV   +         G+F  EL    L +    T   +PHI  I  I   H+ 
Sbjct: 137 GNIGE--GVLWQMYEKK-----GVFVEELSSFQLHD----TQAYKPHIGAILNIKEDHID 185

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNAD 257
                ++  ++K ++    ++   + +N++D       ++ H    K  IY F      D
Sbjct: 186 WHGSFDDYINSKLKLAANQDQGDYLVINHEDEI-----SQKHIKDFKAQIYEFSSQNIVD 240

Query: 258 --FQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
               L   K C       +E  L  + + V    IG H  +N++  + +  +   ++   
Sbjct: 241 RGLFLEGNKICLRNGGCVIEEILDVRDLSV----IGRHNYENVMAAILLTYLYGLNLSEI 296

Query: 314 IKALSVF 320
           IKA+  F
Sbjct: 297 IKAIKTF 303


>gi|193214547|ref|YP_001995746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226711896|sp|B3QWT5|MURD_CHLT3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193088024|gb|ACF13299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 468

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           KA IIAITG+ GKTT   +      +             +IG P +       + D  + 
Sbjct: 109 KAKIIAITGTDGKTTVTTLTKKIFEADGNENGYHAYALGNIGQPFSDTVESLSENDVAVI 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
           E+    L          RP++ VIT I P HL  + G I++ A+AK  I++   +T + +
Sbjct: 169 EISSFQLEHCTSF----RPNVTVITNITPDHLDRYDGNIQKYAAAKYRIYQN--QTASDW 222

Query: 225 LNYDD 229
           L Y+D
Sbjct: 223 LIYND 227


>gi|257885178|ref|ZP_05664831.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
 gi|257821030|gb|EEV48164.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 19/144 (13%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAK 238
           RPHIAVIT I  AH+      +E   AK  + + + +   + LN++ S  + L    KA+
Sbjct: 182 RPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILNWNQSELQELAQRTKAR 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNML 297
                 K +   G   + D+ +   K+             K ME+   G+ G H  +N L
Sbjct: 242 VLPFSTKEVLEGGVYAD-DYSIYYKKE-------------KIMEISELGVPGKHNVENAL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFH 321
             + +  +     +   + L++FH
Sbjct: 288 AAISVAKLYGISNEAIRETLNLFH 311


>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
          Length = 492

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 21/206 (10%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +E+   AK +IF+ LE  G   +N D+ +      K   L  K +
Sbjct: 201 VFTNLTQDHLDFHKTMEDYFQAKLKIFDHLEDEGFAVINRDNEW-----TKRINLADKRV 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             +   +  D  L+K++  +    +E+        +     G     N+L  +G++  L 
Sbjct: 256 L-WASLEEGDIYLKKYENTNSGMILEIATPLGDTVIDTKLRGKFNIYNILFAVGVLIGLG 314

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++   K LS F   +GR +  R    Q F  ++D  Y   P  +    +VL  I    
Sbjct: 315 EPLEDISKILSTFKGVKGRLEFIREG--QNFNVIVD--YAHTPDGL---YNVLQTIKEFT 367

Query: 368 EGRRIAVLG--------DMCEMGELS 385
           +GR I V G           +MGE+S
Sbjct: 368 KGRVIVVFGCGGDRDPTKRGKMGEIS 393



 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           G + GI+ DSR +     FFA+ G   DG  +I  A+ KGA  V
Sbjct: 23 DGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAISKGARAV 67


>gi|297521714|ref|ZP_06940100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Escherichia coli OP50]
          Length = 76

 Score = 38.5 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          ++ ++ D+R + P   F A+KG  +D HDF   A   GAG ++V+
Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVS 68


>gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP   V G+++ ++ + P + F A+ G    G  +   A+++GA  V+ +   VA +G+L
Sbjct: 34  VPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERGAVAVLTDAGGVAEMGAL 93

Query: 82  --SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             S+PV    D  G L  LA  V      + T++ +TG+ GKTTT  ++  AL +   T 
Sbjct: 94  GQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSGKTTTTYLIESALRAAGHTA 153

Query: 138 ACIGSYNNHIGVPLTLARMP 157
             IG+    IG+ +  A +P
Sbjct: 154 GLIGT----IGIRIDGADIP 169


>gi|197285916|ref|YP_002151788.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227356423|ref|ZP_03840811.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
 gi|229620052|sp|B4F110|MURC_PROMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194683403|emb|CAR44145.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227163533|gb|EEI48454.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
          Length = 487

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 152/381 (39%), Gaps = 68/381 (17%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI G+ GKTTT  M       I   YA  G               P  V+ G+ +   +
Sbjct: 122 VAIAGTHGKTTTTAM-------ISNIYAQAGLD-------------PTFVNGGLVKSAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +AV+T I   H+  + G  + +          
Sbjct: 162 HARLGCSRYLIAEADESDASFLHL-QPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     +  K   +G + I ++G S++AD ++  ++Q   Q +  +  
Sbjct: 221 LPFYGRAVMCIDDDVIRSIIPK---VG-RYITTYGFSEDADVRITHYEQKGAQGFFTISR 276

Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +    ++VV +  G H A N    + + +      +  + AL  F   +G G+R+    N
Sbjct: 277 EDMPDLDVVLNAPGRHNALNATAAVAVATEEGIADEHILAALLNF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                    +G   L+D+ Y  +P  + A I       P    +R+ +L         ++
Sbjct: 334 FSLEHVNGQEGEVMLVDD-YGHHPTEVDATIKAARAGWP---DKRLVMLFQPHRYTR-TR 388

Query: 387 SFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFL 435
             + D A VL+  +I   + V+ +G   +   D  +L R+I         +   ++ +  
Sbjct: 389 DLYEDFATVLNQVDILLLTDVYAAGEAPIPGADSRSLCRTIRQRGKLDPIWVSDVENISS 448

Query: 436 FIQSSLVDGDVVVVKSSNSCG 456
            +   L D D+V+V+ + + G
Sbjct: 449 ILAGVLTDNDLVLVQGAGNIG 469


>gi|327405603|ref|YP_004346441.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
 gi|327321111|gb|AEA45603.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
          Length = 455

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 118/297 (39%), Gaps = 49/297 (16%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----TIALSSIK 134
            L+IP++   + L   +K     + R     I I GS GKTT   ML      + L+   
Sbjct: 84  ELNIPIYSYPEYLYEQSK----NKYR-----IVIGGSHGKTTITSMLLHVVNALGLNVDY 134

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG---EIRFLTHLVRPHIAVITT 191
              A +  Y+        + ++  +  F I E G  +L    + R   HL +P+ A+I+ 
Sbjct: 135 MVGAQLEGYD-------CMVKLTDEAKFMILE-GDEYLSSPIDRRPKFHLYKPNTALISG 186

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           IA  H++ F   E          + +E  G +  N +D   + L  +  A          
Sbjct: 187 IAWDHINVFPTWENYVEQFRIFCDVIEPGGILIYNMEDPTLKELGEEFEA---------- 236

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---ILTA 308
           K     +Q   ++     + M     GK  E+  +  G H  QN++  + +     I   
Sbjct: 237 KLDTIAYQTPSYRTTDSGTVM--SFDGKEYEL--NIFGAHNLQNLVGAMHLAESMYISNH 292

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           D  TAIK        +G GKR +  ++   FT+  + +  +P+ +KA  S + +  P
Sbjct: 293 DFLTAIKTF------KGAGKRLQKVVDCNSFTMYKD-FAHSPSKLKATTSAVKEQYP 342


>gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 454

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 19/171 (11%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIG 148
           DV+G   ++  A RL SKA I AITG+ GKTTT  +L  I  +S  KTY        +IG
Sbjct: 94  DVIG---EVEFAYRL-SKAPIYAITGTNGKTTTTSLLGEIFKASGVKTYVA-----GNIG 144

Query: 149 VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            PL  A +  +  D  + E+    L  I+      +P I+ I  I P HL+    +E   
Sbjct: 145 YPLVEAAINANAEDVIVAEISSFQLETIKEF----KPVISAIINITPDHLNRHKTLENYI 200

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
             K  IFE         LNYDD     L  K+       ++ F +++  ++
Sbjct: 201 EIKGRIFENQTADQFTVLNYDDKNISSLFKKAKC----NVFPFSRNRALEY 247


>gi|320335715|ref|YP_004172426.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319757004|gb|ADV68761.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 919

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 117/322 (36%), Gaps = 54/322 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLARM 156
           +  +IAITG+ GK+TT  M+   L    K      S   ++            P +   +
Sbjct: 511 RIPVIAITGTNGKSTTSRMVAHILKHAGKVVGLTTSNGIYVDGELIMGGDTTGPKSAKVI 570

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIF 214
             D +  +  L  +  G +R      R  +  +  I P HL       +E++A  K+ + 
Sbjct: 571 LSDPNVEVAVLETARGGILREGLGFDRADVGAVLNIQPDHLGMKGIETVEDLAYVKSLVV 630

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWME 273
           E +  TGT  LN DD     ++ K  A G  T +S   S      L R   +       E
Sbjct: 631 EVVTDTGTSVLNADDPLTVNMQRK--AGGSITFFSMQDSNACSEHLQRHIDEGGTAVVRE 688

Query: 274 VQLQGKSMEVVHHGIGYHM--AQNMLMTLGIVSILTADVDTAIKALSV------------ 319
             L G  + +   G  Y +  A+ +  TLG       ++  A+ A+ V            
Sbjct: 689 ATLLGDELVLYRAGHRYPVIRAREIPATLG--GYARVNIANALAAIGVAVGAGVELPVIR 746

Query: 320 ---------FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                    F    GR   Y       F  L+D  Y  NP  ++    ++  + P  +GR
Sbjct: 747 AALGSFSTSFEQSPGRLNLYE---GHPFRVLLD--YAHNPDGLRPLAELVPFLRP-AKGR 800

Query: 371 RIAVLG--------DMCEMGEL 384
            I V G        D+ EMG +
Sbjct: 801 VIGVFGVAGDRRDVDIREMGAI 822


>gi|296331096|ref|ZP_06873570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674251|ref|YP_003865923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151740|gb|EFG92615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412495|gb|ADM37614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 451

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 24/219 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+    IG   +      D D    
Sbjct: 111 TNAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGN----IGTVASEVAYHADGD---- 162

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E  ++ L   + + TH  RP I++I  +  AHL      E    AK +++     +    
Sbjct: 163 EWIVTELSSFQLMGTHAFRPEISLILNLFDAHLDYHHTRENYEKAKQKVYLHQAASDKAI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEV 283
           +N DD              +  +   GK++N  F + K  +Q +      +   G+++  
Sbjct: 223 VNQDDE------------TVVRLAEAGKAENIPFSVSKTLEQGAYVKDGMIMFNGEAIIP 270

Query: 284 VHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +   +  G H  +N+L  + +V    A  +   K L+ F
Sbjct: 271 LEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSF 309


>gi|238797706|ref|ZP_04641201.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
 gi|238718458|gb|EEQ10279.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
          Length = 491

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 53/272 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + I ++G S +AD Q+  ++Q   Q    ++ 
Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTIKR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             K  M V  +  G H A N    + + +    + +  + AL+ F   +G G+R+    N
Sbjct: 277 LDKPLMTVTLNAPGRHNALNAAAAIAVATEEGIEDEDILSALAGF---QGTGRRFDFLGN 333

Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358
                    +G   L+D+ Y  +P  + A + 
Sbjct: 334 FPLALVNGKEGSAMLVDD-YGHHPTEVDATVK 364


>gi|297621609|ref|YP_003709746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376910|gb|ADI38740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 415

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TG+ GKTT  +++   L+   K    +G+     G+PLT     +  +  + EL  
Sbjct: 105 MIAVTGTNGKTTVTQLIGHVLNRCGKPAKVLGNG----GIPLTAELDALQKEMIVCELSS 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             L  +   + +V   +  +  I P HL  +  +E  A AK  +   L+    +FL+
Sbjct: 161 YQLETLN--SRVV--DVGAVLNITPDHLDRYLNMEAYAKAKLRLANCLKSDKKLFLS 213


>gi|205355810|ref|ZP_03222579.1| UDP-N-acetylmuramate-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346244|gb|EDZ32878.1| UDP-N-acetylmuramate-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 432

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 107/251 (42%), Gaps = 32/251 (12%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++A++T     HL ++S   E++       E L+      +N +D F +  K +S  L 
Sbjct: 166 PYLAIVTNAEAEHLDHYSN--EVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNESTKL- 222

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               Y     KN   ++  +K  +     E++  G   E    G+GYH+A  +  +L I+
Sbjct: 223 ----YPSKDIKNCTMRIENFKPFTS---FELKDLG---EFKVFGMGYHLA--LDASLAIL 270

Query: 304 SILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + L   D++T    L  +   +G  KR+          LID+ Y  +P  +KA +S   +
Sbjct: 271 AALNFLDIETIRTRLKNY---QGIKKRFDILHADENLVLIDD-YGHHPTEIKATLSAAQE 326

Query: 363 ISPHGEGRRIAVLGD-------MCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLAL 414
            +  G  ++I  + +          + E +++F  +D   +L +Y      +     L L
Sbjct: 327 YAKLGGYKKITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIG----LDL 382

Query: 415 KDALPRSIHVH 425
           K   P+++ V 
Sbjct: 383 KAVFPKALFVE 393


>gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12J]
 gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 129/354 (36%), Gaps = 40/354 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           DG   I  A++ GA  V+       M A      +PV G+ ++ G L             
Sbjct: 59  DGRPHIPQAIEAGASAVLAEAHGYAMPADAPVRILPVDGLAELAGPLAAQWYGVPGPEAL 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI---F 165
            +I +TG+ GKT+  + +  AL+   +  A +G+     G    LA         I    
Sbjct: 119 RVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGTLGT--GFVDALATTGFTTPDAIQLQR 176

Query: 166 ELGMSHLGEIRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAE 212
            L   H    R +   V  H             IAV T +   HL     + E   AKA 
Sbjct: 177 SLADLHRAGARAIAMEVSSHGLEQGRVDGTRFDIAVFTNLTQDHLDYHGTMAEYELAKAR 236

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +F G +      +N DD+    L   + A  ++TI Y       A    R+W + +    
Sbjct: 237 LF-GWQGLRAAVINRDDAAGVRLLQNARA-DVETIEYGIDGDAAAQHGARQWLRATN--- 291

Query: 272 MEVQLQGKSMEV--------VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +     G + +V        VH   +G     N+L  LG +         AI  L    P
Sbjct: 292 VRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSNLLAVLGALLAAGVSWQDAIARLEKLQP 351

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             GR +R+      G   ++D  Y   P +++  +  L+ I+    G+  AV G
Sbjct: 352 VSGRMERF--GGEDGPLVVVD--YAHTPDALEQTLRALAPITEARGGKLWAVFG 401


>gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 487

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 148/377 (39%), Gaps = 47/377 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR + P   F AI G   DG  FI  A+  GA  +V      A      +PV 
Sbjct: 24  ITGVTADSRRVTPGMLFVAIPGTRADGSAFIPAAIAAGAAAIVAPRGTPAP----GVPVI 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
           GVD+   AL  LA          ++A+TG+ GKT+T + L        +  A IG+    
Sbjct: 80  GVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTVDFLRQIWGHQHRRAASIGTLGVI 139

Query: 145 ---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHI 186
                          + +G+   LA M      G+ ++ +   SH  +   L  L R   
Sbjct: 140 ADIDLPDCGPVLTTPDSVGLATLLAAM---ARGGVTDVAIEASSHGLDQHRLDGL-RLSA 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN--YDDSFFELLK--AKSHA 241
           A  T +   HL     ++   +AK  +F+  L   G +  N   D +  + L+  A    
Sbjct: 196 AGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAANADMDTATLDALRDIAARRG 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L ++ +   G +     +L       E   + +   G + ++V    G   A N L+   
Sbjct: 256 LDLRLVGEAGDA----IRLLGSTPLPEGQHLRIASGGVARDIVLALPGRFQADNALLA-- 309

Query: 302 IVSILTADVDTAIKALSVFHPKEG-RGKRYRCA-LNQGFFTLIDESYNANPASMKAAISV 359
             ++     D   +A+ +     G RG+  R A L  G    +D ++  +     A   +
Sbjct: 310 -AALAAPGADGLARAIDLLPALRGVRGRMERAALLPNGAAAYVDYAHTPD-----ALARL 363

Query: 360 LSQISPHGEGRRIAVLG 376
           L  + PH  GR IAV G
Sbjct: 364 LDALRPHASGRLIAVFG 380


>gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12D]
 gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D]
          Length = 514

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 129/353 (36%), Gaps = 38/353 (10%)

Query: 52  DGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           DG   I  A++ GA  V+       M A      +PV G+ ++ G L             
Sbjct: 59  DGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRILPVDGLAELAGPLAAQWYGVPGPEAL 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFE 166
            +I +TG+ GKT+  + +  AL+   +  A +G+       G+ +T    P  +      
Sbjct: 119 RVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGTLGTGFVDGLAVTGFTTPDAIQL-QRS 177

Query: 167 LGMSHLGEIRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEI 213
           L   H    R +   V  H             IAV T +   HL     + E   AKA +
Sbjct: 178 LADLHRAGARAIAMEVSSHGLEQGRVDGTCFDIAVFTNLTQDHLDYHGTMAEYELAKARL 237

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWM 272
           F G        +N DD+    L   + A  I+TI Y       A    ++W + S    +
Sbjct: 238 F-GWPGLRAAVINRDDAAGVRLLQNARA-DIETIEYGIDGEAAAQHGAKQWLRASN---V 292

Query: 273 EVQLQGKSMEV--------VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                G + +V        VH   +G     N+L  LG +         AI  L    P 
Sbjct: 293 RAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLGALLAAGVPWPDAIAHLEKLQPV 352

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            GR +R+      G   ++D  Y   P +++  +  L+ I+    G   AV G
Sbjct: 353 SGRMERF--GGEDGPLVVVD--YAHTPDALEQTLRALAPITEARGGNLWAVFG 401


>gi|311693456|gb|ADP96329.1| UDP-N-acetylmuramate-L-alanine ligase [marine bacterium HP15]
          Length = 481

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 148/367 (40%), Gaps = 43/367 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   L  + +  T+  IG   N  G    L           + + 
Sbjct: 122 IAVAGTHGKTTTTSLIASILGEAGLDPTF-VIGGKLNSAGTNAQLG-------GSRYLVA 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL  P I+V+T I   H+  + G +E++     +    L   G   +  
Sbjct: 174 EADESDASFL-HLT-PVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCV 231

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVV 284
           DD +  E++   S A     I ++G  +  AD++         ++   V+   G+S   V
Sbjct: 232 DDGYVQEIIPRISRA-----IITYGIDNPEADYRAESINSDGLRTHFVVKRPAGRSDLTV 286

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339
              + G H   N L  + + +      D   + L+ F    G G+R++        +G  
Sbjct: 287 ELKMPGRHNVLNALAAIAVATDEGVADDAICRGLAGF---AGVGRRFQVYGDYQTPKGTV 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEV- 395
           TL+D+ Y  +P  ++A I       P    RR+ +L          +L + F   L+EV 
Sbjct: 344 TLVDD-YGHHPTEVEAVIRAAHDAWPD---RRLVMLYQPHRFTRTRDLYEDFVRVLSEVD 399

Query: 396 ----LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVV 449
               + +Y+     + G    AL  ++ +   V      D L +   + + L DGD+++ 
Sbjct: 400 GLLLMDVYSAGEPAIPGADGRALCRSIRQRGQVEPVFVEDNLEIESLLANVLQDGDLLIT 459

Query: 450 KSSNSCG 456
           + +   G
Sbjct: 460 QGAGDIG 466


>gi|310765081|gb|ADP10031.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia sp. Ejp617]
          Length = 491

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 151/385 (39%), Gaps = 76/385 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +   +
Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEGGLD-------------PTFVNGGLVKAAGT 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   L  DD+    L  +   +G + I ++G S++AD ++  + Q   Q    +  
Sbjct: 221 LPFYGRAVLCVDDAVIRDLIPR---VG-RQITTYGFSEDADVRVDNYHQQGAQGHFTLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------ 329
             K  M+V  +  G H A N    + + +    + +  + AL  F   +G G+R      
Sbjct: 277 HDKPLMQVTLNAPGRHNALNAAAAVAVATEENIEDEDILNALESF---QGTGRRFDFLGE 333

Query: 330 YRCALNQGF--FTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGD 377
           Y  AL+ G     ++ + Y  +P  +   I          +++    PH   R   +  D
Sbjct: 334 YPLALSNGSAGTAMLVDDYGHHPTEVDVTIKAARAGWPDKNLVMIFQPHRYTRTRDLYDD 393

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS------ETMD 431
              +  LSQ   +D+  +L +Y+     ++G    A   AL R+I              D
Sbjct: 394 FANV--LSQ---VDVLLMLDVYSAGETPIAG----ADSRALCRTIRGRGKVDPILVSDHD 444

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   +   L   D+++V+ + + G
Sbjct: 445 AVLEMLLPKLTGNDLILVQGAGNVG 469


>gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 41/295 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           ++    +IAI+G+ GKTTT  M+   L           +YN     P  L    V    G
Sbjct: 98  MKDFKNVIAISGTHGKTTTTSMIGYILKK--------ANYN-----PTVLVGAFVKQLSG 144

Query: 164 IFELGMSHLGEIRFLTHL-----VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F +G      +    ++       P I VI  I   HL  F  I+ I ++  +  + + 
Sbjct: 145 NFVIGSKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIS 204

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +G +  N DD   + +K     L  + I    K K   F       C +  + E  ++ 
Sbjct: 205 TSGFLVANCDD---KNVKDIISQLNTQIICISTKEKTDIFA--DNISCID-GYYEFDVKN 258

Query: 279 KSMEVVHH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           K  E + H    I G+H   N L    + S L  +  T   A+S F    G  +R     
Sbjct: 259 KDDETLAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEHAISEFC---GASRRLEKVG 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCE 380
                 L D+ Y  +P  +KA+++ L ++S         PH   R   +L +  E
Sbjct: 316 EFDGIYLYDD-YAHHPTEIKASLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAE 369


>gi|270159321|ref|ZP_06187977.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|289165857|ref|YP_003455995.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
 gi|269987660|gb|EEZ93915.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|288859030|emb|CBJ12959.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
          Length = 879

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 101/265 (38%), Gaps = 68/265 (25%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-NNHIGVPLT-------- 152
           + L ++  I+A+TG+ GKTT   ++           A    Y N+H+G   T        
Sbjct: 476 SHLSARIPIVAVTGTNGKTTVVRLI-----------AHFARYANHHVGFTTTDGVYLNNK 524

Query: 153 --------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL- 197
                         +     +VDF + E      G +R         I++IT I   HL 
Sbjct: 525 LIHSGDCSGPGSAQVVLYDPEVDFAVLECARG--GILRSGLGFDECDISIITNITGDHLG 582

Query: 198 -SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKN 255
            ++   +EE+A  KA +    +K+G   LN DD+  +EL       + + ++Y       
Sbjct: 583 LNDIHTLEELAQVKAVVAHSTKKSGYAILNADDNLTYELRNDFDCNIALFSMYE------ 636

Query: 256 ADFQLRKWKQCS--------EQSWMEVQLQG--------KSMEVVHHGIGYHMAQNMLMT 299
                R  K C         +Q  + VQ           KS+ +  HG    M  N+L  
Sbjct: 637 ---SPRIRKHCRSGGLAAYIDQGKLVVQRGADRTFLSNIKSIPLSFHGAATSMIANILAA 693

Query: 300 L--GIVSILTADVDTAIKALSVFHP 322
              G++S  +   D   +AL VF+P
Sbjct: 694 TLAGVISQFS--FDKIKEALHVFYP 716


>gi|254462310|ref|ZP_05075726.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           HTCC2083]
 gi|206678899|gb|EDZ43386.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 471

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 32/280 (11%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++   E +     +    +   G      DD+  + L  K   L  +
Sbjct: 187 IAIVTNIDPEHMEHWGTEENLHQGFLDFTSNIPFYGLAICCTDDADVQTLVGK---LTDR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + ++G +  AD +          +  ++ LQ +   +    +   G H   N L  + +
Sbjct: 244 RVVTYGFNAQADVRAVGLHYKGGVAMFDIHLQNEDQVIEGCSLPMPGDHNVSNALSAVAV 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D   +AL+ F    G  +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 304 ARHLGMSGDEIRRALAAF---GGVNRRFTKVAEIDGVTIIDD-YGHHPTEISAVLKAARQ 359

Query: 363 ISPHGEGRRIAV------------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S   EGR IA+              D C     S     D+  +  +Y      + G  
Sbjct: 360 AS---EGRVIAIHQPHRYTRLHHHFEDFC-----SCFNEADVVAITEIYAAGEEPIEGAS 411

Query: 411 VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVV 448
              L   L R  H H     T D L   ++     GD+VV
Sbjct: 412 RDDLVAGLIRHGHRHARSITTQDELTALVKEQAKPGDMVV 451


>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 487

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 142/381 (37%), Gaps = 47/381 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVAS 77
           IG + Q  V+ I+ DSR       F A++G   DGH +I  A  +G    VV +      
Sbjct: 16  IGNIEQE-VSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVVEDLPDEKP 74

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            G   + V    + L +L         R   T++ +TG+ GKTT   +L      +    
Sbjct: 75  EGCCFVQVSDTAEALASLASAYYGHPSRH-LTLVGVTGTNGKTTVATLLYRLFRKMGYKA 133

Query: 138 ACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLG-EIRFLTHLVRPHIA------- 187
             + +  N++      T    P  +        M+  G E  F+   V  H A       
Sbjct: 134 GLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFME--VSSHAAAQKRIGA 191

Query: 188 ------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
                 + T +   HL     + E   AK   F+GL       +N DD    ++   + A
Sbjct: 192 LDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNADDKNGLVMVQNTRA 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-----EVVHHGIGYHMAQNM 296
                + ++     A+++ +          +E  + G  M     EV    +G   A N+
Sbjct: 252 ----RVCTYALKSMANYRAK---------IVERHIDGMDMYMDDREVFVRLVGDFNAYNL 298

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L   G    L  D +  ++ LS     +GR + +      G+  ++D ++  +     A 
Sbjct: 299 LCVYGASCELGQDREEVLRILSELTSVDGRFQTF--TSKDGYVAIVDYAHTPD-----AL 351

Query: 357 ISVLSQISPHGEGRR-IAVLG 376
           ++VL  I P  +  + I V+G
Sbjct: 352 VNVLDTIRPLAKSHKVITVVG 372


>gi|301384719|ref|ZP_07233137.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 486

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 38/303 (12%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++    A   +  T+  IG   N  G    L           + + 
Sbjct: 119 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGT-------SRYLIA 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P +AV+T I   H+  + G   ++     E    L   G   +  
Sbjct: 171 EADESDASFL-HL-QPLVAVVTNIDADHMVTYGGDFNKLKKTFVEFLHNLPFYGLAVMCI 228

Query: 228 DD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
           DD        L+K        +   ++G S+++D +    +Q    ++  V  + +  ++
Sbjct: 229 DDPVVRDILPLVK--------RPTMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338
           V  +  G H   N L T+ I +      +  ++ LS F   +G G+R++      +  G 
Sbjct: 281 VSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGF---QGVGRRFQVYGELPVEGGH 337

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D+ Y  +P  + A IS +    P    RR+ ++         ++  + D  +VL+ 
Sbjct: 338 VMLVDD-YGHHPREVAAVISAVRGGWPD---RRLVMVYQPHRFSR-TRDLYDDFVQVLAE 392

Query: 399 YNI 401
            N+
Sbjct: 393 ANV 395


>gi|121587635|ref|ZP_01677399.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|153818410|ref|ZP_01971077.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|20532180|sp|Q9KPG8|MURC_VIBCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121548145|gb|EAX58218.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|126511043|gb|EAZ73637.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|327484896|gb|AEA79303.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 486

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 185 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 230 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 285 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 339

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 340 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 394

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 395 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 455 GDLVLTQGAGDVG 467


>gi|15642397|ref|NP_232030.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153803321|ref|ZP_01957907.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|153822230|ref|ZP_01974897.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227082523|ref|YP_002811074.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229512266|ref|ZP_04401745.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229519402|ref|ZP_04408845.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229528613|ref|ZP_04418003.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229607044|ref|YP_002877692.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254849522|ref|ZP_05238872.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297581027|ref|ZP_06942952.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|298500240|ref|ZP_07010045.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
 gi|9656973|gb|AAF95543.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|124121139|gb|EAY39882.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|126520240|gb|EAZ77463.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227010411|gb|ACP06623.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229332387|gb|EEN97873.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229344091|gb|EEO09066.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229352231|gb|EEO17172.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229369699|gb|ACQ60122.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845227|gb|EET23641.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297534853|gb|EFH73689.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|297540933|gb|EFH76987.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
          Length = 506

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|203284490|ref|YP_002222230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
 gi|201083933|gb|ACH93524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
          Length = 451

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 30/162 (18%)

Query: 98  LAVAARLRSKAT---------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN--- 145
           L +A R+ S+ +         IIAITG+ GK+T   +L   L         + SY N   
Sbjct: 92  LKLAKRIESEISLFLMFNRNPIIAITGTKGKSTLASLLYRVL---------VASYPNVKL 142

Query: 146 --HIGV-PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             +IG+ PL        +   I EL    L +I+ L+    P I++IT +   H + +S 
Sbjct: 143 GGNIGISPLNFLDELDGISPIILELSSWQLHDIKSLS----PMISIITNVYCDHQNYYSN 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++    KA+IF  + +   I +  D ++        H L I
Sbjct: 199 FDDYIEDKAKIF--INQNSGILIVQDQAYCNYFSRFKHNLKI 238


>gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
 gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
          Length = 491

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 147/377 (38%), Gaps = 50/377 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSR       F  +KG   D H+FI   V  G  ++VV        G  +I V 
Sbjct: 23  VEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAGVQILVVERKTELPDGVTAILVH 82

Query: 87  GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              + L  L+    AAR      K   I +TG+ GKTTT  M+   L +  K    IG+ 
Sbjct: 83  NAREALALLS----AARFGYPAEKMVTIGVTGTKGKTTTTHMIKTVLEACGKKVGMIGTT 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEI------------RFLTHLVRP---HI 186
              IG  +T     V+     +EL     H+ E              F  H V       
Sbjct: 139 GIVIGQEVTPT---VNTTPESYELHQAFCHMAEAGCEYMVMEVSSQAFKMHRVDGISFDY 195

Query: 187 AVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243
            + T I+P H+     +  EE    K+ IF    K G   +N DD  + E++K  +  L 
Sbjct: 196 GLFTNISPDHIGPDEHADFEEYLYYKSRIFSCC-KVG--IMNGDDEHWAEVVKDATCRL- 251

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
               YSF  + K+ DF+    +  ++  +  +E  ++G S   V   I G     N L  
Sbjct: 252 ----YSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDIKGISQLSVRVNIPGRFNVANALAA 307

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++S L    +     L   +     G+      ++    ++D ++NA   SM++ +S 
Sbjct: 308 VSVLSFLGLPKENICHGLEHLNVN---GRMEIVYSSETCTVIVDYAHNA--VSMESLLST 362

Query: 360 LSQISPHGEGRRIAVLG 376
           L    P    R + V G
Sbjct: 363 LRDYRPK---RLVCVFG 376


>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|149242349|pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
           Adp
 gi|149242350|pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
           Containing Sulfonamide Inhibitor
 gi|170785037|pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|170785038|pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261087|pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261088|pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
          Length = 445

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +A   I+E  +      
Sbjct: 158 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAXLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 211 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 361

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 362 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 414


>gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 467

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 114/299 (38%), Gaps = 36/299 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156
           LA   RL+S    +AI G+ GKTTT  M+   L +       I G   N  G   T AR+
Sbjct: 100 LAELMRLKS---CVAIAGTHGKTTTTSMVATLLDAGDFDPTVINGGIINAYG---TNARL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E   S    ++  T      IA++T +   HL +F   + +  A     E 
Sbjct: 154 GAG-DWMVVEADESDGTFLKLPT-----DIAIVTNVDAEHLDHFKTFDAVQDAFRSFVEN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + +  +   +  + I ++G++  AD +L         S  +V  
Sbjct: 208 VPFYGFAVMCIDHPVVQTMVGR---IEDRRIITYGQNPQADVRLVDLAPNGGGSHFKVVF 264

Query: 277 QGKSMEVVHH-------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +  H          G H A N    + +   L     T   AL+ F    G  +R
Sbjct: 265 RNRKTDAAHEIPDLVLPMPGPHNALNATAAIAVAHELGIPDATIRNALAAFG---GVKRR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMC 379
           +         T+ID+ Y  +P  + A +          V++ + PH   R  A+  + C
Sbjct: 322 FTKTGEWKGVTIIDD-YGHHPVEIAAVLKAARESTAGRVVAVVQPHRYTRLQALFEEFC 379


>gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
 gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
          Length = 507

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 153/379 (40%), Gaps = 55/379 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++  S+ + P + + A+ G    G +F   A + GA  ++ +   VA      +PV 
Sbjct: 35  VTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAGVALAAGTGLPVL 94

Query: 87  GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL ++A        A  T+I +TG+ GKT+T  ++   L +       IG+  
Sbjct: 95  VVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRAAGHVTGLIGTVE 154

Query: 145 NHIG---------VP--------LTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLV 182
             +G          P        L +AR    VD  + E     L M  +G +RF     
Sbjct: 155 TRLGDLVIDSVRTTPEATDLHAMLAVARE-HGVDTVVMEVSSHALAMGRVGGVRF----- 208

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +   T     HL   +   +  +AKA++F+G  +     LN+DD     L    H  
Sbjct: 209 --DVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHDDPALRPL----HKP 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNML 297
           G  T YS     +A +    W      E       L G     +  G+   G H   N L
Sbjct: 261 GTVT-YSAAGDPDATW----WADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANAL 315

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + ++  +  D +TA + ++      GR +    + +     ++D ++ AN  +++A +
Sbjct: 316 LAVALLVAVGVDPETAARGVAACGGVPGRLE--LVSGDAPVRGVVDYAHKAN--AIEAVL 371

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L  ++   EGR I VLG
Sbjct: 372 IALRDLT---EGRLICVLG 387


>gi|283835153|ref|ZP_06354894.1| UDP-N-acetylmuramate--alanine ligase [Citrobacter youngae ATCC
           29220]
 gi|291069453|gb|EFE07562.1| UDP-N-acetylmuramate--alanine ligase [Citrobacter youngae ATCC
           29220]
          Length = 491

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M    +SSI   YA  G               P  V+ G+ +    
Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
           H  LG  R+L            HL +P +A++T I   H+  + G  E +          
Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G +T  ++G S +AD ++  ++Q   Q    +  
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSDDADVRVEDYQQIGPQGHFTLVR 276

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           QG + + V  +  G H A N    + + +    + +  ++AL  F   +G G+R+
Sbjct: 277 QGMADLRVTLNAPGRHNALNAAAAVAVATEEGIEDEAILRALESF---QGTGRRF 328


>gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c]
          Length = 477

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 100/258 (38%), Gaps = 25/258 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLIAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGAGQWLVV 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   HL N+ +    I  A  E  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCL 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + ++G    AD +     Q   +    + L +GK + V   
Sbjct: 228 DDPEVAELAGKAR----RHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N L    +   L    +   +AL  F    G G+R+      A+  G    +
Sbjct: 284 LPGRHNVLNALAASAVGWQLGVPPEVIGRALKSF---VGIGRRFNDLGDVAIGNGACVRL 340

Query: 343 DESYNANPASMKAAISVL 360
            + Y  +P  ++A  + +
Sbjct: 341 IDDYGHHPRELEAVFAAV 358


>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
 gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G+  N + + + + +     D+ + 
Sbjct: 100 TNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQVAMEKH----DYYVI 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 156 ELSSFQLDNM----YKFRANIAVLMNITPDHLDRYD 187


>gi|315125601|ref|YP_004067604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
 gi|315014114|gb|ADT67452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 42/281 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDV 160
           AR+ SK  ++A+TGS GK+T   ++T+A   +K        Y   +G  +  A +  +D 
Sbjct: 106 ARINSKP-VVAVTGSNGKST---VVTLAYEVLK-----TAGYKVALGGNIGTAVLDLLDG 156

Query: 161 DFGIFELGMS--HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           DF +F L +S   L   R L    +   A +  I+  HL  +   +    +K  I+ G E
Sbjct: 157 DFDVFVLELSSFQLDTTRSL----KTTSATVLNISEDHLDRYDSYQAYIDSKLSIYNGAE 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQ 275
               + +N DD     ++    +  +    SFG+++  D+ L +    +E  +M   E  
Sbjct: 213 H---LVINVDD-----IQTHPVSRTLAPQLSFGETQ-GDYHLAQHN--NEAHFMVKDEAY 261

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L   ++ VV    G H   N L  + ++S  T        AL+ F+     G  +RC   
Sbjct: 262 LPVSTLAVV----GKHNYLNTLAVMALLSPFTITKAHYKTALAQFN-----GLAHRCQF- 311

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            G F  +    ++   ++ A I+ +  ++  GE + + V+ 
Sbjct: 312 VGEFNDVKYFNDSKATNVGATIAAIDSLA--GEQQNLVVIA 350


>gi|313888013|ref|ZP_07821691.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845968|gb|EFR33351.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 464

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 148/384 (38%), Gaps = 43/384 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           + A +++    IA++G+ GKT+T  MLT  +  +          N  I +   L  +  +
Sbjct: 104 LGAVMKNYDKSIAVSGTHGKTSTTSMLTEIIKDL--------DVNPTIMLGGQLKDIDGN 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +  G  +L ++   E +       P   +I  I   HL  F  I+ I        + L +
Sbjct: 156 IKIGDEKLFLTEACEYKANILKYFPTTEIILNIDEDHLDYFDNIDHIIRTFKGYVDNLRE 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +  + +N DD   + L    +       ++FG   +AD  + K  + +E+ +    L  +
Sbjct: 216 SDYVVINIDDENAKTLLPIENC----KFFTFGIKNHADL-MAKNIEFNEEGFPTYDLYLR 270

Query: 280 SMEVVH---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +V H     +G H   N L  +G   +    +  +I  L  +     +G   R  + +
Sbjct: 271 DEKVAHVELSVLGRHNILNSLAAIGAAYVNGISIKDSIAGLKSY-----KGVERRLEV-K 324

Query: 337 GFF--TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELS 385
           GF+    + + Y  +P  +K++I  +             PH   R   +L         +
Sbjct: 325 GFYKGAKVMDDYAHHPTEIKSSIHAIKNACKGKLYTVFQPHTFTRTKLLL------DAFA 378

Query: 386 QSF-HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
            SF   D+  +  +Y          H   L++A+     +  Y    + +  F++ ++  
Sbjct: 379 NSFDESDVIIITDIYAAREKDYGDIHSKTLRNAIADHRDNAFYISGFEDIVKFVKENISK 438

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
            D+ V   +     Y++  +LL+E
Sbjct: 439 DDIFVTMGAGDV--YKIGEMLLDE 460


>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
 gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  ++A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TQAKMICITGSNGKTTTTSLI---YHIFKKAGLNVGLAGN-IGQSLAFQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAKCNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYGYQMQNYVDAKFRI 201

Query: 214 FEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   +    IF N D     +++ + H  GI
Sbjct: 202 IQNQTDADAFIFWNDD----PVIQRELHKYGI 229


>gi|86160190|ref|YP_466975.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|109892690|sp|Q2IG30|MURC_ANADE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85776701|gb|ABC83538.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 458

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 51/334 (15%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYAC 139
            IPV    ++L  L +L            +AI GS GKTTT  M    +A + +  T A 
Sbjct: 91  KIPVIPRAEMLAELMRLKYG---------VAIAGSHGKTTTTSMAAHLLAHAGLDPT-AV 140

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +G   N  G    L +     D+ + E   S    +R     + P IA++T I P HL +
Sbjct: 141 VGGKVNAFGSNAKLGKG----DYMVVEADESDGSFLR-----IPPTIAIVTNIDPEHLDH 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +   + +     +    +   G   L  D    + +         K + ++G+S  AD++
Sbjct: 192 WKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVE----KRVVTYGESHQADYR 247

Query: 260 LRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               +        +   + +++   EV    +G H A N L  + +   +        +A
Sbjct: 248 AEAIELSGHAVRFDAFRRDEALGRFEVAM--VGRHNALNALAVIALGDEMGIPPLVTREA 305

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHG 367
           L  F   +G  +R+         T++D+ Y  +PA +KA +          V+    PH 
Sbjct: 306 LRSF---QGVQRRFTVRGEVAGVTVVDD-YGHHPAEVKATLQGAREAFKRRVVCLFQPH- 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              R     D+  M E + +F  + A+VL L +I
Sbjct: 361 ---RYTRTRDL--MAEFATAF--NDADVLLLTDI 387


>gi|15679903|ref|NP_275877.1| UDP-MurNac-tripeptide synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|7482867|pir||B69198 UDP-N-acetylmuramyl tripeptide synthetase related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
          Length = 450

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 25/177 (14%)

Query: 83  IPVFGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKEML-----TIALSSIK 134
           +PV  VD +  A N LA++    R    +  + +TG+ GK+TT  M+     T   SS  
Sbjct: 57  LPVILVDRIENA-NALALSWTIERFAPSSRRVVVTGTNGKSTTTHMIHHIIETTGASSYT 115

Query: 135 KTYACIGSYNNHIG--VPLTLARMPVD--VDFGIFE-------LGMSHLGEIRFLTHLVR 183
            T +    +N  I   V   +A    D   +F + E       LG       R +T  + 
Sbjct: 116 NTDSR-SEFNTLIDPVVSQQIAEASSDGAPEFMVIEVSEVQGWLGRVMRDHARMMTAAIG 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           P + VIT +A  H+     +E++    A     +E +G   LN DD   E ++A +H
Sbjct: 175 PEVVVITNVAMDHIGLVESVEDVFREVAGALRAIE-SGVAVLNADD---ERVRAMAH 227


>gi|121728371|ref|ZP_01681400.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|147675354|ref|YP_001217902.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O395]
 gi|172047586|sp|A5F5M8|MURC_VIBC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121629362|gb|EAX61793.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|146317237|gb|ABQ21776.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 486

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 185 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 230 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 285 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 339

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 340 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 394

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 395 VLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 455 GDLVLTQGAGDVG 467


>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Rhodanine Inhibitor
 gi|306991519|pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
           5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
           Ligase
          Length = 439

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 102 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +A   I+E  +      
Sbjct: 157 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAXLRIYENAK---VCV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 210 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 260

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 261 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 360

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 361 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 413


>gi|300933353|ref|ZP_07148609.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium resistens
           DSM 45100]
          Length = 481

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 69/350 (19%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYAC 139
           +IPV    DVL  L        +  +A ++A  G+ GKT+T  M   AL +     ++A 
Sbjct: 95  NIPVVRRSDVLAQL-------MVDRRAFLLA--GTHGKTSTTSMAVAALQAAGWDPSFAI 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHL 197
            G  N          R   +   G  ++ ++   E    FL++  +P +AV+T + P HL
Sbjct: 146 GGQLN----------RAGTNAHHGTGDVFVAEADESDGSFLSY--QPEVAVVTNVEPDHL 193

Query: 198 SNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             F G EE      E F G   T GT+ +  DD       A S AL      S   +   
Sbjct: 194 DYF-GTEEAYREVFERFAGCVVTGGTLVVCLDD-------AGSRALAQSLSRSI-PADER 244

Query: 257 DFQLRKW-KQCSEQSWMEVQLQG--KSMEVVHHGI--------------------GYHMA 293
           D+++  +  + + +   EV+     + M +   G                     G HM 
Sbjct: 245 DYRILGYGTRAAVEDAPEVEAGAIIEDMRITPAGTEVSVRFFDDEAPRVLRVAIPGSHMV 304

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFTLIDESYNANPA 351
            N    +   ++L AD+D  ++ ++ F   +G  +R  Y  ++N      + + Y  +P 
Sbjct: 305 LNATAAVLGGALLGADIDKLLEGIAEF---DGVRRRFEYHGSVND---VHVYDDYAHHPT 358

Query: 352 SMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + A +S   + I   G+GR IAV      +   + +F  + A  LSL +
Sbjct: 359 EVTAVLSAARERIEAQGKGRVIAVF--QPHLYSRTMTFADEFAAALSLAD 406


>gi|269215876|ref|ZP_06159730.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
 gi|269130826|gb|EEZ61902.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
          Length = 463

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 22/222 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R K T+ A  G+ GKTTT  ML  A+ ++      I      +G  +   R       G 
Sbjct: 106 RGKKTLAA-AGTHGKTTTSSMLAGAVDALGLDPTFI------VGGMVDAYRTNAKSGTGD 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL   + P++A++T +   HL ++  GI+EI +        +   G +
Sbjct: 159 YYVVEADESDGSFLN--LSPYVALVTNVEADHLDHYVGGIDEIRATFKTFMASVPADGAL 216

Query: 224 FL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +   D S  EL ++       + + S+G S   D ++  +      S   +     +  
Sbjct: 217 VVCGEDPSLAELAESTG-----RRVVSYGFSPACDVRVSDYATHGVSSTFTLSFPDGT-- 269

Query: 283 VVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           VV  G+    G H A N    LG++  L  DV +A   ++ +
Sbjct: 270 VVESGLAKNPGRHNALNAAGVLGVIWALGLDVASASAGIASY 311


>gi|227014294|gb|ACP10504.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 506

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 143/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|110800658|ref|YP_696598.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
 gi|110675305|gb|ABG84292.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
          Length = 441

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 16/145 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T++V P + V+T+I+  H++   + IEEIA  K     G+ 
Sbjct: 137 VDYAVLEVG---LGGRLDATNVVLPEVVVLTSISLDHMNILGNTIEEIAKEKC----GII 189

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           K+G   ++Y  ++   E++K + + LG    + +    +N      K  Q      +EV 
Sbjct: 190 KSGVPVISYPQEEKALEVIKERCNELGCNLEVVNTEDIRNIIIDKEKHIQ-----KIEVS 244

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTL 300
           L+ + +++    +G H  +N L+ L
Sbjct: 245 LEDEILKIDLGLLGDHQVKNFLVAL 269


>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
 gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
          Length = 458

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 14/126 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPL--TLARMPVDVDFGI 164
           A +  ITGS GKTTT  ++   L S   KT+  +G    +IG PL   +  M    D  +
Sbjct: 117 AKVFGITGSDGKTTTTTLVYNMLKSEGYKTW--VGG---NIGNPLFANIEEM-TKADKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I+        + A++T ++P HL     +EE   AK  IF+   +   + 
Sbjct: 171 LELSSFQLMTIK-----EDMNCALVTNLSPNHLDIHKDMEEYVDAKKNIFKYQNENDLLV 225

Query: 225 LNYDDS 230
           LN D+ 
Sbjct: 226 LNKDNK 231


>gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
 gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
          Length = 466

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 113/304 (37%), Gaps = 39/304 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + ITGS GK+TT  ++   L    +     G    +IG  +     P D +  + EL   
Sbjct: 123 VCITGSNGKSTTTALIHHILKHAGRATQMAG----NIGRGVLDLDPPEDGEVVVLELSSY 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDD 229
                R LT    P IAV T ++P H+   SG+    +AK  +F EG      I ++  +
Sbjct: 179 QTDLARALT----PDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEGAPDRAVIGVDEPE 234

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQ---------LRKWKQCSEQSWMEVQLQG-K 279
             +   +    A   + I      K  DF          L +W++  + +   + L+G K
Sbjct: 235 GVYLANQMAMGATDDRVIRVSSAKKLGDFGWSVFARKGFLAEWRKGRQVA--SIDLRGVK 292

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++   H+      A     +LG+   L  +          FH   G   R +    +   
Sbjct: 293 ALPGAHNHQNACAAYAACRSLGLAPKLIEE---------AFHSFGGLPHRSQTIAEKRGV 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  S   A+   S I          ++G M + G +S +    L  V   Y
Sbjct: 344 RYVNDSKATNVDSAAKALEAFSNIR--------WIVGGMGKEGGVS-ALKPLLGSVKKTY 394

Query: 400 NISH 403
            I H
Sbjct: 395 FIGH 398


>gi|254557006|ref|YP_003063423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
 gi|254045933|gb|ACT62726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
          Length = 459

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 134 KKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           ++T A       +IGVP + +A+     D  + EL    L  I+ L     PHIAVIT I
Sbjct: 136 QRTNAGKAYVAGNIGVPASAIAQKATAADTMVTELSSFMLCGIQTL----HPHIAVITNI 191

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL      E    AK  I         + +N+D   +  L  +S A    T+  F +
Sbjct: 192 YSTHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQLSKQSQA----TVVPFSR 247

Query: 253 SKN 255
             N
Sbjct: 248 QAN 250


>gi|149173091|ref|ZP_01851722.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
 gi|148847897|gb|EDL62229.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
          Length = 885

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 120/304 (39%), Gaps = 61/304 (20%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLT------------LARM 156
           IIA+TG+ GKTTT +++  AL    K     G+    I GV +T            + R 
Sbjct: 482 IIAVTGTNGKTTTSKLIAHALKYSGKNVGLAGTTGIEIDGVTITAGDYSGPEGARVVLRE 541

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214
           P  VD  + E+     G IR        HI ++  +   H+       ++++A  K+ + 
Sbjct: 542 PT-VDHAVLEVARG--GIIRRGLGFEDCHIGILLNVDEDHIGTDGVEDLDDLALVKSTVI 598

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E +  +G   LN DD+    LK ++   G   IY    S+N         Q   +    V
Sbjct: 599 EVVRPSGFSILNADDAVVVGLKDRA---GGAVIYFSLDSENVTV-----TQHLTEGGTAV 650

Query: 275 QLQGKSMEVVHHGIGYHMAQ--NMLMTL-GIVSILTAD--------------VDTAIKAL 317
            L+G  + +  +G    +    +  +TL GIV+  TA+              V+T    +
Sbjct: 651 VLEGDDVIIRSNGPPVRVLSILDAPITLRGIVTFNTANVLAAVAALHGLGMAVNTIRNGM 710

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLID-------ESYNANPASMKAAISVLSQISPHGEGR 370
           S FHP            N G   +ID         Y  N  ++ A  + L +IS    GR
Sbjct: 711 STFHPS--------ATQNPGRMNIIDFVTFKVILDYGHNVPAINALGTALPKIS---NGR 759

Query: 371 RIAV 374
           +I +
Sbjct: 760 KIVI 763


>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
          Length = 529

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 154/398 (38%), Gaps = 53/398 (13%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           Q +QG   G+     V G+  DSR +   + F  + G   DG +F+  A+ +GA   ++ 
Sbjct: 28  QVVQGSLEGVQ----VRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTRGAVAALIA 83

Query: 72  TDMVASI------GSLSIPVFGVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKT 120
            +    +      GS  I V     +  AL ++A A     AR   + T++ +TG+ GKT
Sbjct: 84  QEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPAR---QLTLVGVTGTNGKT 140

Query: 121 TTKEMLTIALSSIKKTYACIGS-YNNHIG----------VPLTLAR-----MPVDVDFGI 164
           TT  ++   L +  +  A +G+ YN   G           PL L R          +  +
Sbjct: 141 TTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEAGAEVAV 200

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L + R          AV T +   HL     +E    AKA +F+     G   
Sbjct: 201 MEVSSHALAQDRAWGCSF--AAAVWTNLTQDHLDFHGSMENYWQAKATLFQPEYLQGRAV 258

Query: 225 LNYDDS----FFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +N DD       E + A  +  A  ++ +         D Q+        Q+ +   L  
Sbjct: 259 VNADDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHP---NGLQATLHTPL-- 313

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++ V    +G     N+L  +G+   L   ++    AL  F    GR +R      Q  
Sbjct: 314 GTLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLP-GQDI 372

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             ++D  Y   P  ++   ++L  + P  +GR I V G
Sbjct: 373 TVIVD--YAHTPDGLE---NLLKALRPQVQGRLICVFG 405


>gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
 gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
          Length = 506

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 12/172 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D ++   EL    L E    T    P  A +  I P H+     +E  A+AK +IF  L 
Sbjct: 168 DDEWFCAELSSFQLAE----TSNFHPVAAALLNITPDHIEWHGSMEAYAAAKEQIFAQLT 223

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 ++ DD++   +  +  A G+  +     S  AD Q ++     E + M ++L  
Sbjct: 224 ADNLAIISRDDAYCRAIYERLCARGVPVLCV---STGADPQTQQAAY-VENNIMHIRLHN 279

Query: 279 KS---MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++    +V +  + G H  QNML    +     ADV      L  F   E R
Sbjct: 280 RTYTLCDVRNTKLQGEHNIQNMLTASALALFAGADVQAITDVLLQFSTLEHR 331


>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Geobacter bemidjiensis Bem]
 gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Geobacter bemidjiensis Bem]
          Length = 505

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
          +  +  DSR +AP   FFA++G   DG +F+  AV+ GA  +V +
Sbjct: 23 IESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGGAVAIVAD 67


>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7245652|pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7546574|pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|157834055|pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P  L  +  + +  + 
Sbjct: 102 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP-ALMLLDDECELYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L     L  +     A I  +   H+  +  G+++  +A   I+E  +      
Sbjct: 157 ELSSFQLETTSSLQAVA----ATILNVTEDHMDRYPFGLQQYRAAXLRIYENAK---VCV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++        +   SFG +   D+ L   +    ++W+ V+    L  K 
Sbjct: 210 VNADDALTMPIRGAD-----ERCVSFGVNM-GDYHLNHQQG---ETWLRVKGEKVLNVKE 260

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 261 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLPHRFEVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG              D + +    N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG--------GDGKSADFSPLARYLN 360

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +V L  F     + A  R      +ETM+     +   +  GD+V++  S +C
Sbjct: 361 GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL--SPAC 413


>gi|227499510|ref|ZP_03929617.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227218389|gb|EEI83640.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129
           N +++A+   LS+PV      LGAL        +R+    IA++GS GK+TT  M++ I 
Sbjct: 84  NEELIAA-KKLSVPVVTRGVFLGAL--------MRNYKNSIAVSGSHGKSTTTSMISKIL 134

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + S K     +G           L  M  +V  G  E  ++   E +       P   ++
Sbjct: 135 MHSDKDATILLGG---------ELEEMKGNVRVGSEEYLVTEACEYKGNIRYYYPQTLIV 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             I   HL  +  +E+I +   E     ++      N ++    L+
Sbjct: 186 LNIDEDHLDYYKDLEDIVNTFKEYLSNQDENSMTITNLNEDNNRLI 231


>gi|119717289|ref|YP_924254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nocardioides
           sp. JS614]
 gi|119537950|gb|ABL82567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nocardioides sp.
           JS614]
          Length = 488

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 21/150 (14%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTTTKEMLTIAL 130
           ++A   +  IP++G         ++ +A RLR    +   + +TG+ GKTTT +ML   L
Sbjct: 94  LLAQARARRIPIWG---------EVELAWRLRDPDHRTPWLCVTGTNGKTTTVQMLDSIL 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +       +G    ++G+P+  A M P   D    EL    L      T  +    A +
Sbjct: 145 RAAGLRSIAVG----NVGLPIVEAVMDPEPYDVLAVELSSFQL----HYTDSMSAEAAAV 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             +A  HL  +S     A+ K  I+E  +K
Sbjct: 197 LNVAEDHLDWYSSFGAYAADKGRIYERAQK 226


>gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 112/292 (38%), Gaps = 31/292 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDF- 162
           +  A  +A+TG+ GKT+T + L    +      A +G+      G P T +    D    
Sbjct: 35  QQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTLGLRAPGFPETPSLTTPDPVLL 94

Query: 163 -----GIFELGM--------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                G+   G+        SH  E R L  L R   A  + +   HL    G+   A+A
Sbjct: 95  HETLAGLARAGVQKVALEASSHGLEQRRLDGL-RLTAAGFSNLTRDHLDYHGGMAAYAAA 153

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWK 264
           K  +F+ L   G   +   D   E+L+     A+   L + T+   G++     +L +  
Sbjct: 154 KLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRHLRLATVGEAGEA----IRLLRHT 209

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +   +E+ L G+  E++    G   A N+++  G+        D     L       
Sbjct: 210 PRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVSAGMPADKVAGLLPRLTGVR 269

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           GR       L  G    +D  Y   P +++    +L+ + PH EGR   V G
Sbjct: 270 GR-MELAARLPNGAAVYVD--YAHTPDALE---RLLTALRPHAEGRLHVVFG 315


>gi|262370166|ref|ZP_06063493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
 gi|262315205|gb|EEY96245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
          Length = 448

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 143/379 (37%), Gaps = 66/379 (17%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPV 158
           R  +   I+AITGS  K+T   +              IG    H GV +     L R  +
Sbjct: 100 RRATDKPIMAITGSNAKSTVTTL--------------IGLMAEHAGVKVAVGGNLGRPAL 145

Query: 159 DV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           D+     D  I EL    L      T  ++  +AV+  ++  HL     +    +AK  I
Sbjct: 146 DLTKDEPDLYILELSSFQL----ETTSNLQAEVAVVLNMSEDHLDRHGDMMGYHTAKHRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQL---RKWKQ 265
           F+G++K   +  N DDS    L       +S  L    +  +G  ++ D  +   R   +
Sbjct: 202 FQGVKK---VVHNRDDSLTRPLVPDATPMQSFGLNAPDMNQYGVLRDDDGTIWLARGRTR 258

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               + M +Q             G H   N L  L +   +   +++ ++ L  F     
Sbjct: 259 LLNSAEMYIQ-------------GTHNVANALACLALGEAINLPLESMLETLKSF----- 300

Query: 326 RGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +G  +RC   +        ++S   N  +  AAI  L        G+   +LG   +  +
Sbjct: 301 KGLEHRCEFVKDVEGVRYYNDSKGTNVGATLAAIDGLGAAIEAKGGKVAIILGGQGKGQD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S      L E LS Y +    L G     ++ A+  +  + ++ET++      Q+    
Sbjct: 361 FSA-----LREALSKY-VKVAVLIGEDAALIEQAVAGTTTLLHAETLEQAVALCQAHTQA 414

Query: 444 GDVVVVKSSNSCGFYRLIN 462
            DVV++  S +C  + + +
Sbjct: 415 HDVVLL--SPACASFDMFS 431


>gi|169831595|ref|YP_001717577.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638439|gb|ACA59945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 449

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T   RP +AVI  +   HL     +E    AKA IF   + +    LN+DD     L ++
Sbjct: 168 TRDFRPRVAVILNLTSDHLDRHGTMEAYIEAKAAIFANQQASDWTVLNFDDPRTRALASR 227

Query: 239 SHA 241
           + A
Sbjct: 228 TRA 230


>gi|325856508|ref|ZP_08172197.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|327313073|ref|YP_004328510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
 gi|325483477|gb|EGC86450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|326944914|gb|AEA20799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
          Length = 443

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++    ++        G+  N +   L +A
Sbjct: 90  ISEIEFAGRY-TDAKMICITGSNGKTTTTSLIYHIFTNAGYDAGLAGNIGNSLA--LQVA 146

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
             P   ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 147 EDP--HEYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFF--ELLKAKSHAL 242
            +      +     DD     EL K   HA+
Sbjct: 201 IQNQTAEDSFIYWNDDPVIKKELEKFDVHAV 231


>gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 507

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 153/379 (40%), Gaps = 55/379 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++  S+ + P + + A+ G    G +F   A + GA  ++ +   VA      +PV 
Sbjct: 35  VTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAGVALAAGTGLPVL 94

Query: 87  GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL ++A        A  T+I +TG+ GKT+T  ++   L +       IG+  
Sbjct: 95  VVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRAAGHVTGLIGTVE 154

Query: 145 NHIG---------VP--------LTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLV 182
             +G          P        L +AR    VD  + E     L M  +G +RF     
Sbjct: 155 TRLGDLVIDSVRTTPEATDLHAMLAVARE-HGVDTVVMEVSSHALAMGRVGGVRF----- 208

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +   T     HL   +   +  +AKA++F+G  +     LN+DD     L    H  
Sbjct: 209 --DVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHDDPALRPL----HKP 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNML 297
           G  T YS     +A +    W      E       L G     +  G+   G H   N L
Sbjct: 261 GTVT-YSAAGDPDATW----WADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANAL 315

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + ++  +  D +TA + ++      GR +    + +     ++D ++ AN  +++A +
Sbjct: 316 LAVALLVAVGVDPETAARGVAACGGVPGRLE--LVSGDAPVRGVVDYAHKAN--AIEAVL 371

Query: 358 SVLSQISPHGEGRRIAVLG 376
             L  ++   EGR I VLG
Sbjct: 372 IALRDLT---EGRLICVLG 387


>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 441

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IGVP+T     P+     + E+    L  +    H  RP +AV   + P HL     +E
Sbjct: 138 NIGVPVTSFLNEPISETIIVAEVSSFQLETV----HTFRPQVAVFLNLTPDHLDRHGSME 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIK 245
                KA IF+  +      LN +D    S    LK+++ A GI+
Sbjct: 194 NYFQTKARIFKLQQPQDLGVLNAEDRWASSLIGSLKSRTLAFGIE 238


>gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
          cellulolyticus CD2]
 gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
          cellulolyticus CD2]
          Length = 484

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
          VN I+ DSR       F  ++G   DGH FI  A++ G   ++V  ++    G   I V 
Sbjct: 23 VNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENGTRALLVQREVEVPEG---ITVI 79

Query: 87 GVDDVLGALNKLA 99
           VDD   AL  +A
Sbjct: 80 RVDDTRYALASVA 92


>gi|300768844|ref|ZP_07078738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493577|gb|EFK28751.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 459

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 134 KKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           ++T A       +IGVP + +A+     D  + EL    L  I+ L     PHIAVIT I
Sbjct: 136 QRTNAGKAYVAGNIGVPASAIAQKATAADTMVTELSSFMLCGIQTL----HPHIAVITNI 191

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL      E    AK  I         + +N+D   +  L  +S A    T+  F +
Sbjct: 192 YSTHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQLSKQSQA----TVVPFSR 247

Query: 253 SKN 255
             N
Sbjct: 248 QAN 250


>gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
 gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
          Length = 549

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 155/388 (39%), Gaps = 46/388 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           Q  ++G+S+DS  +AP E F A+ G    G +F   AV  GA  V+ + D    +G+   
Sbjct: 43  QVLIHGVSVDSGDVAPGELFVALPGFRRHGAEFAAQAVAGGAVAVLTDADGATRLGASLG 102

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--AC 139
            +PV    D    +  LA A      AT +  T +V  T  K   T  L SI   +   C
Sbjct: 103 QVPVLTHPDPRAVVGPLA-AEVYHHPATHLTTT-AVTGTNGKTTTTYFLQSILAAHLGQC 160

Query: 140 I--GSYNNHIGV-----PLTLARMPV-------DVDFGIFELGM---SHLGEIRFLTHLV 182
           +  G+    +G      P T    PV        V+ G+    +   SH   +  L   V
Sbjct: 161 MIAGTVELSVGTQSVESPRTTVEAPVLQRMMALAVEEGVKAASLEASSHAIVLHRLGGTV 220

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---AKS 239
              +A  T +   HL     +EE   AKA +F   E      +  DD +   L    A  
Sbjct: 221 V-DVAGFTNLQRDHLDFHHTMEEYLEAKARLFTP-EHARRAVICVDDRWGAALAERVADR 278

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKW-----KQCSEQSWMEVQL---QGKSMEVVHHGIGY 290
            A+ +  + ++    + D  Q  +W     K    Q+     L    G+ +E +    G 
Sbjct: 279 GAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMTQAATTFTLHGPDGEQIEALCPLPGL 338

Query: 291 HMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              QN    L +V  L A V  DTA++AL+  H   GR +R      +    ++D  +  
Sbjct: 339 VNVQN--AALALVMALRAGVAQDTAVQALAHAHNIPGRMQRISQRDGRRGTCIVD--FAH 394

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P +M  A+  + +I+P   GR I V G
Sbjct: 395 TPEAMDLALKAVREITP---GRLIVVFG 419


>gi|190149285|ref|YP_001967810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262598|ref|ZP_07544228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914416|gb|ACE60668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872021|gb|EFN03735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 436

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T    +T  ++ + K          +IGVP+ L+ +  + +  +
Sbjct: 103 EAKAPIIAITGANGKST----VTTLVTEMAKQAGIKVGMGGNIGVPV-LSLLNDEYELFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  I+  H+  ++  +EE   AK  I++  E    +
Sbjct: 158 LELSSFQLETTSSLNAVA----ATILNISEDHMDRYNNSLEEYRLAKLRIYDNAE---NV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +N +D     L+ ++    +K +  F +  NA++ +R
Sbjct: 211 IVNGEDRLTYPLETQA----VKKLIRFAE-HNAEYTMR 243


>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 540

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          ++G++  S++++  E FF + G  YDGH F   A  KGA  ++V  ++
Sbjct: 37 ISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVEREI 84


>gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 448

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  +V+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDEVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|328952332|ref|YP_004369666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452656|gb|AEB08485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 467

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 27/249 (10%)

Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           K  + AI+G+ GKTTT  ++  + L+S K+          +IG PL  L     + D  I
Sbjct: 114 KRPVAAISGTNGKTTTTTLVGKMLLASGKRPL-----VGGNIGTPLVDLLSQQAEADCII 168

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L          RP  A +  I+  HL  +   +  A +KA +F     + T  
Sbjct: 169 LEVSSFQLDT----APSFRPRAAALLNISEDHLDRYPDFQAYARSKAGLFRRQGPSETAV 224

Query: 225 LNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           LN DD      KA + A  +++ +Y F   K   F    W+  + +S      +G   + 
Sbjct: 225 LNADDP-----KAAALADQVQSQVYLFSTRKKLTFG--AWQ--AGESLRVCLARGPEAKF 275

Query: 284 VHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             + I   G H  +N++  L +   + A      +AL+ F   +G   R     N G   
Sbjct: 276 PLNKIVLPGRHNLENIMAALLLALEMGATPQGCAEALARF---KGLPHRLEWVANIGGVD 332

Query: 341 LIDESYNAN 349
             D+S   N
Sbjct: 333 FYDDSKGTN 341


>gi|241667549|ref|ZP_04755127.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876094|ref|ZP_05248804.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842115|gb|EET20529.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 452

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 14/188 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFEL 167
           IA+TG+ GKTTT  +L   L  +  T + +      +G  +  A   + V   D  + E 
Sbjct: 106 IAVTGTHGKTTTSSILATLLCKLDTTSSFV------VGGVVKYADSNIQVNGTDRLVIEA 159

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   +  FL   + P++A++T I   H+S +    +        F   E    I+L  
Sbjct: 160 DES---DASFL--YLNPNVAIVTNIDLDHMSTYKNSYDNLLENFANFLMKESIENIYLCV 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L  K  +  +  I S+G + N+D ++  ++     +   V+ +  + +     
Sbjct: 215 DDHGCNDLLDKYRSRVVGNIVSYGFAINSDARIYNYRVSDNLTTFTVEYKSGNYDFELQL 274

Query: 288 IGYHMAQN 295
            G +  QN
Sbjct: 275 PGKYNVQN 282


>gi|225867925|ref|YP_002743873.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259509782|sp|C0MGF5|MURC_STRS7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225701201|emb|CAW98126.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 443

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 111/283 (39%), Gaps = 40/283 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T + + G+ GKT+T  +L+  L  +  T   IG    H            D  + +FE  
Sbjct: 104 TSLGVAGAHGKTSTTGLLSHVLKHMAATSYLIGDGTGHGAA---------DARYFVFE-- 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   E  F+ +   P  ++IT I   H   F+G++++ +A  +  + ++K   +F+  +
Sbjct: 153 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQVKK--ALFVYGE 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287
           D   EL K  S A     IY +G     DF      + +  S  +V+   K +   H   
Sbjct: 208 DE--ELRKISSPA----PIYYYGFEDTDDFVAFDITRTTNGSDFKVRHHHKLIGQFHLPA 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESY 346
            G H   N    +  + I   D+    + L  F    G  +R+    +N    T+I + +
Sbjct: 262 YGRHNILNATAVIANLFIAGFDMKLVAEHLKSF---SGVKRRFTEKVIND---TIIIDDF 315

Query: 347 NANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
             +P  + A +    Q            PH   R IA+L D  
Sbjct: 316 AHHPTEIIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFA 358


>gi|134102301|ref|YP_001107962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914924|emb|CAM05037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 469

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)

Query: 103 RLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLA-----RM 156
           R    AT +A+TG+ GKTTT  ML +I  +      AC      ++G+P+  A     R+
Sbjct: 108 RPAGPATWLAVTGTNGKTTTVGMLESILRADGVDVVAC-----GNVGLPVVDAVRAGHRV 162

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            + V+   F+L           +  V PH +V+  +A  HL     ++   +AKA ++ G
Sbjct: 163 -LAVELSSFQL---------HWSQTVAPHASVVLNLAADHLDWHGSLDAYGAAKARVYAG 212

Query: 217 LEKTGTIFLNYDDSF 231
                    N DD +
Sbjct: 213 ---NSVAVHNADDEW 224


>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
 gi|167698274|gb|EDS14853.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G+  N + + + + +     D+ + 
Sbjct: 100 TNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQVAMEKH----DYYVI 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 156 ELSSFQLDNM----YKFRANIAVLMNITPDHLDRYD 187


>gi|57168569|ref|ZP_00367702.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter coli
           RM2228]
 gi|57020074|gb|EAL56751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter coli
           RM2228]
          Length = 402

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + I+G+ GKTTT +M T  LS +    A +G+   ++G PL  A + ++    I E    
Sbjct: 93  VWISGTNGKTTTTQMATHLLSHVG---AVMGA---NVGFPL--AELDLNAKIWILETSSF 144

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L      TH  +P I  +  I+  HLS     E  A  K  + E + +     L
Sbjct: 145 TL----HYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAIL 195


>gi|330938046|gb|EGH41814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 332

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 25/153 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G+    +G P  L  +  +V+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGN----LGTP-ALYLLSDEVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF-------------FELLKAKSHALGIK 245
           N  D+              F L K   H  G++
Sbjct: 215 NRQDALSRPLIGEGLPCWTFGLNKPDFHGFGLR 247


>gi|322834419|ref|YP_004214446.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
 gi|321169620|gb|ADW75319.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
          Length = 495

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+T         YA  G               P  V+ G+ +   +
Sbjct: 126 IAVAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 165

Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEG 216
           H  LG  RFL            HL +P +A++T I   H+  + G  EI           
Sbjct: 166 HARLGSSRFLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFEILKQTFINFLHN 224

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD     L  +   +G + + ++G S++AD  +  ++Q   Q    ++ 
Sbjct: 225 LPFYGRAVMCIDDPVIRELIPR---VG-RHMTTYGFSEDADVIIENYRQVGAQGHFTLRR 280

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           Q   +  V  +  G H A N    + + +      D  ++AL+ F   +G G+R+
Sbjct: 281 QDLPLISVTLNAPGRHNALNAAAAVAVATDENISDDAILRALAGF---QGTGRRF 332


>gi|253689955|ref|YP_003019145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756533|gb|ACT14609.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 438

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 186/461 (40%), Gaps = 71/461 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFVARGVIPRVVDTRISPP---GLDKLPEQVERHLGSLNED 61

Query: 69  -VVNTDM-VASIG-SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +++ D+ VAS G +L+ P+     D  +  +  + +  R  ++A I+AITGS GK+T  
Sbjct: 62  WLMSADLIVASPGIALATPILCDAADAGIEIVGDIELFCR-EAQAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  +  + +          +IG+P L L   P      + EL    L      T  +
Sbjct: 119 --VTTLVGEMARAAGWQVGVGGNIGLPALQLLEQP--AQLYVLELSSFQLE----TTSSL 170

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---AK 238
               A I  +   H + +  G+++  +AK  I+   E      +N DD+    ++   A+
Sbjct: 171 HAAAATILNVTEDHTNRYPFGLQQYRAAKLRIY---EHADLCVVNADDALTMPVRGADAR 227

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
             + G+            D+ L + +    ++W+ V     L  + +++V    G H   
Sbjct: 228 CRSFGVDV---------GDYHLNRQQG---ETWLRVDGERVLNTREIKLV----GQHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +A+ AL+ F    G   R++ A        I++S   N  S +
Sbjct: 272 NALAALALADAVKIPRASALTALTTF---AGLPHRFQMAFEHNGVRWINDSKATNVGSTE 328

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+S L+      EG    +LG   +  + S        E + LY        G  + AL
Sbjct: 329 AALSGLTV-----EGTLHLLLGGDGKSADFSPLVPYLQGEHIRLYCFGR---DGQQLAAL 380

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  +        +ETM+     I   +  GD+V++  S +C
Sbjct: 381 RPEI-----AEQTETMEQAMRVIAERVKPGDMVLL--SPAC 414


>gi|229822993|ref|ZP_04449063.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
 gi|229787806|gb|EEP23920.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           I+A+TGS GKTTT   +   L+   +  A +     +IGVP L  A      D  + E+ 
Sbjct: 115 IVAVTGSNGKTTTTSWIHQMLAHRPQGQARLAG---NIGVPSLVTANQASPDDVIVMEVS 171

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
              L      T   RP IAV+T +  AHL      E   +AK
Sbjct: 172 SFQL----MGTEKFRPSIAVMTNLTSAHLDYHGSQEGYEAAK 209


>gi|227113988|ref|ZP_03827644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 438

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 153/367 (41%), Gaps = 56/367 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARDVVPRVVDTRISPP---GLDKLPEQVERHLGSLNED 61

Query: 69  -VVNTDM-VASIG-SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +++ D+ VAS G +L+ P+     D  +  +  + +  R  ++A I+AITGS GK+T  
Sbjct: 62  WLMSADLIVASPGVALATPILCDAADAGIEIVGDIELFCR-EAQAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  +  + +          +IG+P L L   P      + EL    L      T  +
Sbjct: 119 --VTTLVGEMARAAGWQVGVGGNIGLPALQLLEQP--AQLYVLELSSFQLET----TSSL 170

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---AK 238
               A I  +   H + +  G+++  +AK  I+   E      +N DD+    ++   A+
Sbjct: 171 HAAAATILNVTEDHTNRYPFGLQQYRAAKLRIY---EHADLCVVNADDALTMPVRGADAR 227

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
             + G+            D+ L + +    ++W+ V     L  + +++V    G H   
Sbjct: 228 CRSFGVDV---------GDYHLNRQQG---ETWLRVDGERVLNTREIKLV----GQHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +A+ AL+ F    G   R++ A  +     I++S   N  S +
Sbjct: 272 NALAALALADAVKIPRASALTALTSF---TGLPHRFQMAFERNGVRWINDSKATNVGSTE 328

Query: 355 AAISVLS 361
           AA+S L+
Sbjct: 329 AALSGLA 335


>gi|77462655|ref|YP_352159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
 gi|122063256|sp|Q3J4M6|MURD_RHOS4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77387073|gb|ABA78258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 465

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGS GK+TT  ++   LS   +     G+    + + L  AR   D +  + EL  
Sbjct: 122 VVCVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGV-LDLDPAR---DGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G+    +AK  +F EG      I ++  
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEP 233

Query: 229 DSFF 232
           +  +
Sbjct: 234 EGLY 237


>gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
          6-diaminopimelate ligase; AltName:
          Full=Meso-A2pm-adding enzyme; AltName:
          Full=Meso-diaminopimelate-adding enzyme; AltName:
          Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
          ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase;
          AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase (UDP-N-acetylmuramyl-tripeptide synthetase)
          (meso-diaminopimelate-adding enzyme)
          (UDP-MurNAc-tripeptide synthetase) [Photorhabdus
          luminescens subsp. laumondii TTO1]
          Length = 495

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI----PV 85
          +++DSR  +  + F AIKG   DG  +I  A+ +G   V+         G++ I    PV
Sbjct: 25 MTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGVAAVIAEAQGEVDNGTVQIMHGVPV 84

Query: 86 FGVDDVLGALNKLA 99
            V+D+   L++LA
Sbjct: 85 VYVNDLNNKLSQLA 98


>gi|28378801|ref|NP_785693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum WCFS1]
 gi|308180998|ref|YP_003925126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258037|sp|Q88V80|MURD_LACPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28271638|emb|CAD64544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           plantarum WCFS1]
 gi|308046489|gb|ADN99032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 459

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 134 KKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           ++T A       +IGVP + +A+     D  + EL    L  I+ L     PHIAVIT I
Sbjct: 136 QRTNAGKAYVAGNIGVPASAIAQKATAADTMVTELSSFMLCGIQTL----HPHIAVITNI 191

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL      E    AK  I         + +N+D   +  L  +S A    T+  F +
Sbjct: 192 YSTHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQLSKQSQA----TVVPFSR 247

Query: 253 SKN 255
             N
Sbjct: 248 QAN 250


>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
 gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
          Length = 438

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 15/128 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A+I+AITGS GK+T    +T  +  + K          +IG+P L+L + P      +
Sbjct: 103 AQASIVAITGSNGKST----VTTLVGEMAKAAGWQVGVGGNIGLPALSLLKAP--AQLYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      TH ++   A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLET----THSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQ---VC 209

Query: 224 FLNYDDSF 231
            +N DD  
Sbjct: 210 VVNADDGM 217


>gi|258542971|ref|YP_003188404.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634049|dbj|BAI00025.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637109|dbj|BAI03078.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640161|dbj|BAI06123.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643218|dbj|BAI09173.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646273|dbj|BAI12221.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649326|dbj|BAI15267.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652312|dbj|BAI18246.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655370|dbj|BAI21297.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 477

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 23/210 (10%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+V+T + P HL ++   E + +A  +    +   G   L  D    + +  +   L   
Sbjct: 178 ISVVTNMDPEHLDHWGSPEAMEAAYDQFVSNVPFYGFAVLCIDHPAVQQMIPR---LSDH 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-------IGYHMAQNMLM 298
            I ++G S  AD +  K       +  EV L  +               +G H  QN L 
Sbjct: 235 RIVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRRTRKAGPFRLPMLGSHNVQNALA 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + + +    D     L+ F    G  +R+      G  T+ID+ Y  +P  + A + 
Sbjct: 295 AIAVATEMDISDDVIRSGLASFR---GVKRRFTRTGEAGGITVIDD-YGHHPVEIAAVLK 350

Query: 359 ---------VLSQISPHGEGRRIAVLGDMC 379
                    V++ + PH   R   +  D C
Sbjct: 351 AARQAGANHVIAVMQPHRYSRLKILFSDFC 380


>gi|221638512|ref|YP_002524774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides KD131]
 gi|254766055|sp|B9KNJ5|MURD_RHOSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221159293|gb|ACM00273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides KD131]
          Length = 465

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGS GK+TT  ++   LS   +     G+    + + L  AR   D +  + EL  
Sbjct: 122 VVCVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGV-LDLDPAR---DGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G+    +AK  +F EG      I ++  
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEP 233

Query: 229 DSFF 232
           +  +
Sbjct: 234 EGLY 237


>gi|167038683|ref|YP_001661668.1| hypothetical protein Teth514_0008 [Thermoanaerobacter sp. X514]
 gi|289577273|ref|YP_003475900.1| hypothetical protein Thit_0008 [Thermoanaerobacter italicus Ab9]
 gi|300913757|ref|ZP_07131074.1| protein of unknown function DUF1727 [Thermoanaerobacter sp. X561]
 gi|307723226|ref|YP_003902977.1| hypothetical protein Thet_0008 [Thermoanaerobacter sp. X513]
 gi|166852923|gb|ABY91332.1| domain of unknown function DUF1727 [Thermoanaerobacter sp. X514]
 gi|289526986|gb|ADD01338.1| domain of unknown function DUF1727 [Thermoanaerobacter italicus
           Ab9]
 gi|300890442|gb|EFK85587.1| protein of unknown function DUF1727 [Thermoanaerobacter sp. X561]
 gi|307580287|gb|ADN53686.1| domain of unknown function DUF1727 [Thermoanaerobacter sp. X513]
          Length = 446

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG +   N+L  +    +L  D +T  KA   + P EGR ++ +    +    LI     
Sbjct: 272 IGIYNVYNLLAAISASILLNIDFNTISKATENYWPIEGRLQKTKIKNKKAIINLI----- 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NP   ++ +++LSQ S       I++  +  +  ++S  + ++L + LS   ++++  S
Sbjct: 327 KNPIGFESTLNMLSQFS-KPLNLLISINDNYADGRDVSWLWDVNLEDFLSKTKVNYIITS 385

Query: 408 GFH 410
           G  
Sbjct: 386 GLR 388


>gi|213851945|ref|ZP_03381477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 84

 Score = 38.1 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++  + L  +S  +
Sbjct: 2   RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VI 58

Query: 243 GIKTIYSFG-KSKNADF 258
           G + ++ F   + N+DF
Sbjct: 59  GSRKVWRFSPNAANSDF 75


>gi|165975474|ref|YP_001651067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251838|ref|ZP_07338009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307249139|ref|ZP_07531146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|165875575|gb|ABY68623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649268|gb|EFL79453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854427|gb|EFM86623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 436

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T   ++T     + K          +IGVP+ L+ +  + +  +
Sbjct: 103 EAKAPIIAITGANGKSTVTTLVT----EMAKQAGIKVGMGGNIGVPV-LSLLNDEYELFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  I+  H+  ++  +EE   AK  I++  E    +
Sbjct: 158 LELSSFQLETTSSLNAVA----ATILNISEDHMDRYNNSLEEYRLAKLRIYDNAE---NV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +N +D     L+ ++    +K +  F +  NA++ +R
Sbjct: 211 IVNGEDRLTYPLETQA----VKKLIRFAE-HNAEYTMR 243


>gi|312136565|ref|YP_004003902.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224284|gb|ADP77140.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 510

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 31/164 (18%)

Query: 110 IIAITGSVGKTTTKEML---------TIALSSIKKTYACIGSYNNHIGVPLTLARMPV-- 158
           ++ + G+ GKTTT  M+         T+  SS++ +    G           LA + V  
Sbjct: 113 MVGVAGTDGKTTTTNMIYYLLKDKYSTLVFSSLQDSLVIEG-----------LAEIVVNQ 161

Query: 159 ---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D +F +FEL   H G IR +  L    + V+T + P HL  F G  +       + +
Sbjct: 162 DYKDKEFAVFEL--PH-GTIRMVKGL-ELSVGVLTNLTPDHLDEFDGYWDYVKRNFLVKD 217

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
            + K G +  N DD     LK   +   +   Y  GK +   ++
Sbjct: 218 LVHKNGLLVFNSDDPIIYKLKNSVNKEIV--FYGLGKPQKIKYK 259


>gi|305432988|ref|ZP_07402144.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Campylobacter
           coli JV20]
 gi|304443689|gb|EFM36346.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Campylobacter
           coli JV20]
          Length = 402

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + I+G+ GKTTT +M T  LS +    A +G+   ++G PL  A + ++    I E    
Sbjct: 93  VWISGTNGKTTTTQMATHLLSHVG---AVMGA---NVGFPL--AELDLNAKIWILETSSF 144

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            L      TH  +P I  +  I+  HLS     E  A  K  + E + +
Sbjct: 145 TL----HYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNE 189


>gi|83816151|ref|YP_444704.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
 gi|109892736|sp|Q2S527|MURC_SALRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83757545|gb|ABC45658.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
          Length = 475

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 15/225 (6%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT+I   HL  +  +  I ++  +    +   G   L  DD   + +        
Sbjct: 182 PSLAVITSIEEDHLDVYEDLAAIQASFTQYANSVPFFGAAILCLDDPNVQAIVGDVE--- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGI 302
            + + ++G ++ A+ +    ++    +  +V ++G+ +  +  H  G H  +N L  + +
Sbjct: 239 -RRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGERLGTIELHVPGMHNVRNALAAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +     L  F    G  +R+      G  T++D+ Y  +P  ++A +    Q
Sbjct: 298 GQELEISFERVRDGLGTF---TGVRRRFEKKGEVGGITVLDD-YAHHPTEIEATLDAAHQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  + R +AV      M   +Q+F  + A   S +N   + L+
Sbjct: 354 GFP--DRRVVAVF--QPHMYSRTQNFMDEFA--CSFFNADMLVLT 392


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 32/250 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIG----SYNN 145
           L  L++    A L  ++T I I+GS GKTTT  ++       K   +YA  G    S N 
Sbjct: 88  LPLLHRSQCLAMLMEESTKILISGSHGKTTTTSLIIAIFQEAKNDPSYAVGGLNSESLNG 147

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIE 204
           H G          + D           G ++       P +AV+T +   HL N+    E
Sbjct: 148 HAGSSSIFIAEADESD-----------GSLKHYA----PDVAVVTNLDEEHLVNYDDDPE 192

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           ++  A  E    +  +  +F N D       + K    GI    ++G S +   Q+  + 
Sbjct: 193 KLLKAMQEFSNKVRDSQKVFYNGD-----CPQLKGEISGI----TYGFSPSCQLQVVSFY 243

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           Q   QS       G   + +   + G H   N     G+      ++    KAL  F   
Sbjct: 244 QREWQSSFSFIFCGIEYQNIELNLPGRHNVLNAAAACGVALTFGIEISVIRKALKKFPGV 303

Query: 324 EGRGKRYRCA 333
           + R ++  C+
Sbjct: 304 QRRLEQKNCS 313


>gi|254495866|ref|ZP_05108776.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
 gi|254354902|gb|EET13527.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
          Length = 458

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 175/443 (39%), Gaps = 55/443 (12%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +   K  H  G D ++ +   G      N ++VA+   L IPV         + + A+ A
Sbjct: 53  YLGHKAEHMQGADVVVRSSAVGMN----NPEVVAAREQL-IPV---------IPRAAMLA 98

Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            L      IA+ G+ GKTTT  +++  +A   +  ++  IG   N  GV   L + P   
Sbjct: 99  ELMRFRHGIAVAGTHGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSAGVNAKLGQSP--- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            + + E   S   +  FL   ++P +A++T I   H+S +    +++ +   E    L  
Sbjct: 155 -YFVVEADES---DASFL--FLKPMMAIVTNIDADHMSTYEDNFDKLRTTFLEFLHHLPF 208

Query: 220 TGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            G   +  DD     +L++       +   ++G +  A ++   W Q    S   V    
Sbjct: 209 YGLAVVCTDDPEVRNILQSIE-----RPTLTYGFNDEAHYRAVDWTQNELLSEFTVARPA 263

Query: 279 --KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               + +     G H   N L  + I + L       + AL+ F   +G G+R++    +
Sbjct: 264 PYPPLNICFQYPGRHNVLNALAAIAIATELGVSDAAIVSALAKF---QGVGRRFQMLGEK 320

Query: 337 GF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            F     L+ + Y  +P  + + I    ++ P+   R + V          +QS H    
Sbjct: 321 HFERGSALVVDDYGHHPQEIFSTIDAFRRVWPN--KRLVHVF--QPHRYSRTQSLHDQFV 376

Query: 394 EVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +VLSL         Y+     + G     L   +  +           L + +   ++DG
Sbjct: 377 DVLSLSDKLFLFDIYSAGEAAIPGISSEGLAQKIRGNDKNVTMVNEQSLKMQLDEFILDG 436

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
           DV++++ + + G    +NL+ E+
Sbjct: 437 DVILIQGAGNIGQI-AVNLMQEK 458


>gi|53729121|ref|ZP_00134085.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207504|ref|YP_001052729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae L20]
 gi|307249215|ref|ZP_07531212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|126096296|gb|ABN73124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|306858739|gb|EFM90798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 436

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T    +T  ++ + K          +IGVP+ L+ +  + +  +
Sbjct: 103 EAKAPIIAITGANGKST----VTTLVTEMAKQAGIKVGMGGNIGVPV-LSLLNDEYELFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  I+  H+  ++  +EE   AK  I++  E    +
Sbjct: 158 LELSSFQLETTSSLNAVA----ATILNISEDHMDRYNNSLEEYRLAKLRIYDNAE---NV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +N +D     L+ ++    +K +  F +  NA++ +R
Sbjct: 211 IVNGEDRLTYPLETQA----VKKLIRFAE-HNAEYTMR 243


>gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 479

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 30/228 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  Q  FF +KG ++   +++  A+++G    +   D       + IP   V+
Sbjct: 38  LSYDSRDVDDQTLFF-VKGANFKA-EYLQSALEQGLPAYISEVDY-----EVDIPAIIVN 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+  A++ +A+A     +    ++A TG+ GKTT+       L    KT A + + N  +
Sbjct: 91  DIKHAMSIIAMAFYDNPQDNLKLLAFTGTKGKTTSAYFAYHILKQSHKT-AMLSTMNTTL 149

Query: 148 -GVPLTLARMPVDVDFGIFEL-------GMSHL-GEIRFLTHLV-RPH-----IAVITTI 192
            G     +++       +F++       GM+HL  E+    +LV R +     + V   I
Sbjct: 150 DGQTFFKSQLTTPESLDLFKMMAECVSNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNI 209

Query: 193 APAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +P H+        E+    K  +   +E +  + +N D  +F++LK +
Sbjct: 210 SPDHIGPIEHPTFEDYFYHKRLL---MENSRAVIINSDMDYFKILKEQ 254


>gi|307244817|ref|ZP_07526916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253771|ref|ZP_07535625.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258228|ref|ZP_07539971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260467|ref|ZP_07542162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306854262|gb|EFM86468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863255|gb|EFM95195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867688|gb|EFM99533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869870|gb|EFN01652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 436

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T    +T  ++ + K          +IGVP+ L+ +  + +  +
Sbjct: 103 EAKAPIIAITGANGKST----VTTLVTEMAKQAGIKVGMGGNIGVPV-LSLLNDEYELFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  I+  H+  ++  +EE   AK  I++  E    +
Sbjct: 158 LELSSFQLETTSSLNAVA----ATILNISEDHMDRYNNSLEEYRLAKLRIYDNAE---NV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +N +D     L+ ++    +K +  F +  NA++ +R
Sbjct: 211 IVNGEDRLTYPLETQA----VKKLIRFAE-HNAEYTMR 243


>gi|269838017|ref|YP_003320245.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787280|gb|ACZ39423.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 481

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H + PH+AVIT I+  HL+ +  +     AK +I         + LN DD     L  +S
Sbjct: 191 HGLSPHVAVITNISEDHLNRYPSMAAYVEAKRQIARYQGPDDWLVLNRDDP----LAWES 246

Query: 240 HALGIKTIYSFGKSKNA 256
            + G   +  FG + +A
Sbjct: 247 RSAGAGRVVPFGMAGDA 263


>gi|229174579|ref|ZP_04302109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
 gi|228608884|gb|EEK66176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
          Length = 450

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 26/206 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  + ITGS GKTTT  ML   +    + +  I     +IG   T+A   V  D    
Sbjct: 110 SEAPFVGITGSNGKTTTT-MLAFEMLKEGQKHPIIAG---NIG---TVA-CEVAQDAKEN 161

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+ ++ L   + +   L +P IA    +  AHL      +E   AKA IF+   +     
Sbjct: 162 EVVVTELSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +++   +++ G K ++S  K       +++   C            K  +VV
Sbjct: 222 INADDA--DVMALSAYSKGQKVLFSTTKEIEDGACIKENALCF-----------KGEKVV 268

Query: 285 HHG----IGYHMAQNMLMTLGIVSIL 306
             G     G H  +N+L  + I  +L
Sbjct: 269 EVGDIVLPGQHNLENILAAMSIAKLL 294


>gi|332557537|ref|ZP_08411859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
 gi|332275249|gb|EGJ20564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
          Length = 465

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGS GK+TT  ++   LS   +     G+    + + L  AR   D +  + EL  
Sbjct: 122 VVCVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGV-LDLDPAR---DGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G+    +AK  +F EG      I ++  
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEP 233

Query: 229 DSFF 232
           +  +
Sbjct: 234 EGLY 237


>gi|269978146|ref|ZP_06185096.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307701109|ref|ZP_07638134.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
 gi|269933655|gb|EEZ90239.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307614104|gb|EFN93348.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
          Length = 490

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG 163
           RSK  ++A+ G+ GKTTT  ML+ AL  +    +  IG      G   T AR+     F 
Sbjct: 118 RSK-DLLAVAGAHGKTTTSAMLSKALWDVGADPSFAIGGVILEYG---TGARLGRGRAF- 172

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S   +  FL +   P + V+T I P HL ++   E    A  +    +   G I
Sbjct: 173 VIEADES---DGSFLNYA--PLVEVLTNIEPDHLDHWGSREAFDQAFVDFTARIRPGGAI 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG 251
               DD+    L  + H+      Y FG
Sbjct: 228 VACGDDAGIRRLAPRFHSGAALVSYGFG 255


>gi|291003737|ref|ZP_06561710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 479

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)

Query: 103 RLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLA-----RM 156
           R    AT +A+TG+ GKTTT  ML +I  +      AC      ++G+P+  A     R+
Sbjct: 118 RPAGPATWLAVTGTNGKTTTVGMLESILRADGVDVVAC-----GNVGLPVVDAVRAGHRV 172

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            + V+   F+L           +  V PH +V+  +A  HL     ++   +AKA ++ G
Sbjct: 173 -LAVELSSFQL---------HWSQTVAPHASVVLNLAADHLDWHGSLDAYGAAKARVYAG 222

Query: 217 LEKTGTIFLNYDDSF 231
                    N DD +
Sbjct: 223 ---NSVAVHNADDEW 234


>gi|240143954|ref|ZP_04742555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203987|gb|EEV02272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|291539527|emb|CBL12638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 401

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YNNHIGVPLTLARMPVDVD-F 162
           +  +I ITG+ GK+TT  ML   L       AC G       +IG P       V  D  
Sbjct: 86  RDQVIGITGTKGKSTTSAMLYTVLK------ACSGRPVLLLGNIGQPCLDYFEEVTEDTI 139

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            ++E+    L         V PHIA+   +   HL  +  +E+   AK+ I    +K+G 
Sbjct: 140 IVYEMSCHQLAHTN-----VSPHIAIFLNLYEEHLDYYGTVEKYFEAKSHI-AAYQKSGD 193

Query: 223 IFL 225
            F 
Sbjct: 194 YFF 196


>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 496

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +  +   L +      
Sbjct: 25  VTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIAVVAERPVECAPARLLLAPSARR 84

Query: 90  DVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
            +  A        A RLR    + A+TG+ GKTT
Sbjct: 85  AMALAAASFHGRPAERLR----MAAVTGTNGKTT 114


>gi|89055254|ref|YP_510705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Jannaschia
           sp. CCS1]
 gi|118595660|sp|Q28NN2|MURD_JANSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|88864803|gb|ABD55680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jannaschia sp.
           CCS1]
          Length = 460

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 25/252 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L          G    +IG  +     P+D +  + EL  
Sbjct: 117 VVAVTGSNGKSTTSALIAHILEEAGTPVQLAG----NIGRGVLDIEPPIDGEVIVIELSS 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P IAV T ++  HL    G+    +AK  +F EG  +   I ++  
Sbjct: 173 YQTELARALT----PDIAVFTNLSADHLERHGGMGGYFAAKRRLFSEGGPERAVIGVDEI 228

Query: 229 DSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +  +   +L++       I+   S GK          W   + + W+    +G+    + 
Sbjct: 229 EGQYLAGQLVEGPEDGRLIRV--SSGKLSGP-----GWDVSTRKGWLSEFRKGRQAASID 281

Query: 286 -HGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             G+    G H  QN     G+   L         A + F     R +R    +N  F+ 
Sbjct: 282 LRGVPGLPGAHNHQNAACAYGVCRALGLAPRVIEAAFATFEGLPHRSQRV-AEINGVFYV 340

Query: 341 LIDESYNANPAS 352
              ++ N + A+
Sbjct: 341 NDSKATNVDAAT 352


>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 413

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G+    IG  L L       D+ I 
Sbjct: 69  TDAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGN----IGKSLALQVAEEHHDYYII 124

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +  + T   F
Sbjct: 125 ELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQN-QTTDDAF 179

Query: 225 LNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
           + ++D    ++K +    G+K  +Y F   K
Sbjct: 180 IFWNDD--PIIKQELAKHGLKAHLYPFAAVK 208


>gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
 gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
          Length = 483

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 157/388 (40%), Gaps = 66/388 (17%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-- 82
           G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +    +L   
Sbjct: 18  GTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPTG 77

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           IP   +  +   L +  +A R  +  +    +  +TG+ GKTT    L  A   + +  A
Sbjct: 78  IPCIAIPQLAEKLGE--IAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSA 135

Query: 139 CIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGE-------IRFLTHLVRPHI-- 186
            IG+    IG     A  P++    D    +  M    E       +   +H +  H   
Sbjct: 136 YIGT----IGQGKVDALKPLENTTPDALCLQRLMHQYKEGGIKQVCMEVSSHALSQHRVD 191

Query: 187 ------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--K 238
                 A+ T +   HL     ++   +AK+ +FE  E    I +N DD F +L+    K
Sbjct: 192 SLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFERAELQWAI-INQDDDFQDLMSNVLK 250

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ---- 294
           +H   +K + ++G  +N D +  +W          + + G  +E V    G+H+ +    
Sbjct: 251 TH---VKKV-TYGMHQNCDVKALQWN---------MDITGTEIE-VKSPWGHHLLKIKAL 296

Query: 295 ---NMLMTLGIVSILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              N+  +L + S L A   + +  ++ ++      GR +     + Q  + L+D  Y  
Sbjct: 297 GKFNIYNSLAVYSSLLASGYNPEKVVQVMAELKAAPGRME----IVAQSPYVLVD--YAH 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376
            P +++  +  L QI    +GR   V G
Sbjct: 351 TPDALENVLITLKQIK---KGRLWVVFG 375


>gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter
           cryohalolentis K5]
 gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter cryohalolentis K5]
          Length = 570

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 29/204 (14%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK-----ATIIAITGSVGKTTTKEMLTIALSSIK 134
           +L  PV  V ++   L  L + ARL+ +      T+IA+TG+ GKTT  +++        
Sbjct: 142 ALPCPVLHVPNIRDFLGTL-IQARLQYQQPVTLPTVIAVTGTNGKTTISQLVAQLTQLTG 200

Query: 135 KTYACIGSYNN-HIGVPLTLARMPVDV----DFGIFELGM-----------SH-LGEIRF 177
            + A +G+  N   G  +  +    DV     F ++++G            SH L + R 
Sbjct: 201 MSSAVMGTAGNGRFGALVQASHTTGDVLAVQQF-LYQMGKEGAELLALEASSHGLDQQRL 259

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELL 235
               V   +A+ T ++  HL   + + E A+AKA++F+           +N DD   +++
Sbjct: 260 QGMPVS--VAIYTNLSRDHLDYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEHAQIM 317

Query: 236 KAKSHALGIKT-IYSFGKSKNADF 258
              +HA  +    YS    K A F
Sbjct: 318 LDTAHASNLTVWTYSLDSLKTATF 341


>gi|304411645|ref|ZP_07393257.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|307306303|ref|ZP_07586048.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
 gi|304349833|gb|EFM14239.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|306911176|gb|EFN41603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
          Length = 439

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 100/262 (38%), Gaps = 39/262 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITGS GK+T    +T  +  + +      +   +IGVP  L  +  + D  + E
Sbjct: 108 KPCVIGITGSNGKST----VTTLVGEMAREAGIAVAVGGNIGVP-ALDLLHENADLFVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A    I+  H+  +S I     AK  ++   +++  +  N
Sbjct: 163 LSSFQL----ETTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFN 215

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
            DD      E +   S  L       +G S +     + +   SE     EV L      
Sbjct: 216 RDDKLTVPPEPMNQNSFGLAAPEADEWGISDS-----KIYHGSSEIMPITEVSL------ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT 340
                IG H   N+L  + +V  +  D     K    F      G  +RC +   +   T
Sbjct: 265 -----IGSHNHANLLAAMALVDAVGVDKQVMAKVARSF-----TGLSHRCEVVGIKNGVT 314

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            +++S   N  +  AA+  LS 
Sbjct: 315 YVNDSKATNVGATVAALDGLSD 336


>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
 gi|217986153|gb|EEC52492.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++     S        G+  N + + + + 
Sbjct: 90  ISEIEFAGRY-TDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQVAME 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +     D+ + EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 149 KH----DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYD 187


>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 496

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 143/380 (37%), Gaps = 52/380 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR   P   F  + G   DGHD+I  A   GA  V+V  ++    G   + V 
Sbjct: 25  ITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGAVAVLVEKEVSVEPG---MTVI 81

Query: 87  GVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V D   A+  +        + +LR    +I +TG+ GKTTT  ++   L         I
Sbjct: 82  KVSDTRAAMQAITPFFFDYPSQKLR----VIGVTGTNGKTTTTHLIRSILMQAGYKVGLI 137

Query: 141 GSYNNHIG---VPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ +  IG   +P+             LA M    +D+ + E+    L   R  T     
Sbjct: 138 GTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEVSSHALALNR--TAGCEF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-----KTG-TIFLNYDDSFFELLKAK 238
            I V T I   HL      E    AKAE+F  +      KTG +  +N DD       A 
Sbjct: 196 DIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGKSAVINTDDP------AA 249

Query: 239 SHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +H L   T    ++G    AD   R     ++ +  E       + +     G     N+
Sbjct: 250 AHMLREVTYRAITYGVQDGADLTARNINIQADGAKFEAVTTRGIIPLALQITGLFNVYNV 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G+      + D    AL  F    GR +       Q F  ++D  Y   P  ++  
Sbjct: 310 LAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDAG--QPFTVIVD--YAHTPDGLENI 365

Query: 357 ISVLSQISPHGEGRRIAVLG 376
           +    Q +   + R IAV G
Sbjct: 366 LKTARQFA---QRRIIAVFG 382


>gi|89891769|ref|ZP_01203271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
 gi|89515924|gb|EAS18589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
          Length = 452

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 25/187 (13%)

Query: 49  PHYDG-HDF--ILHA--VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           PH  G HD   IL+A  V K  G +  N  +V  I   +IPV         ++++  A+R
Sbjct: 57  PHETGGHDIEQILNADVVVKSPG-IPDNATIVQKIIEANIPV---------ISEIEFASR 106

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             S    IAITGS GKTT   ++   L  I      IG    +IG            ++ 
Sbjct: 107 F-SDEVEIAITGSNGKTTVTSLIGHIL-QIANYDVTIGG---NIGQSYAAQVAESPAEYR 161

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + E+    L  I+      +P +AV+  I P HL  +    E   ++K  I    ++   
Sbjct: 162 VLEVSSFQLDGIKTF----KPKVAVLLNITPDHLDRYDYKFENYVASKMRIAMNQDENDF 217

Query: 223 IFLNYDD 229
           +  N DD
Sbjct: 218 LIYNADD 224


>gi|126461548|ref|YP_001042662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|158513433|sp|A3PHS4|MURD_RHOS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|126103212|gb|ABN75890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 465

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGS GK+TT  ++   LS   +     G+    + + L  AR   D +  + EL  
Sbjct: 122 VVCVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGV-LDLDPAR---DGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G+    +AK  +F EG      I ++  
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEP 233

Query: 229 DSFF 232
           +  +
Sbjct: 234 EGLY 237


>gi|319892796|ref|YP_004149671.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162492|gb|ADV06035.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 437

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 36/263 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +        ++  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPQS--------EYFAFE---- 150

Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTIFLN 226
              E R  FL++   P  A+IT I   H   F  ++++ +A    F+G+ K     I   
Sbjct: 151 -ACEYRRHFLSY--SPDYAIITNIDFDHPDYFKDVDDVINA----FQGMAKNVKKAIIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD + + ++          +Y +G   + D   +  +     +  +  ++G+     V 
Sbjct: 204 GDDPYVKNIEVDI------PVYYYGFDTSMDVYAQNIEVTGSGTEFDAYVKGEFYGHFVS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L I  +   ++D   +AL  F    G  +R+     Q    L+D+ 
Sbjct: 258 PQYGDHNILNALAVLTISYLENLNLDNIKEALITFG---GVKRRFNETFAQN-QVLVDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGE 368
           Y  +P  + A I    +  P+ E
Sbjct: 313 YAHHPREISATIETARKKYPNKE 335


>gi|313903534|ref|ZP_07836924.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466087|gb|EFR61611.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 478

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 6/176 (3%)

Query: 184 PHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P IAV+T + P HL ++ G    +  A       +   G +    D      L A   A 
Sbjct: 183 PRIAVVTNVEPEHLDHYEGDFRRLLDAFRGFLGNVRPGGLVVACGDHPVVRQLLAGLPAG 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
            ++      ++++   + R  +   E +   V  +G+ + EV     G H   N L  L 
Sbjct: 243 RVRVARYGVEAEDCHLRARDVQTGPEGTRFSVWQEGRPLGEVTLAVPGEHNVLNALAALA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   +      A +AL+ FH   G  +R++   ++    ++D+ Y  +P  ++A +
Sbjct: 303 VGLEVGVPFGVAAQALAGFH---GAKRRFQVIHDRDGILVVDD-YAHHPTEIRATL 354


>gi|161507884|ref|YP_001577848.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           DPC 4571]
 gi|172048345|sp|A8YWG1|MURC_LACH4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160348873|gb|ABX27547.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DPC
           4571]
          Length = 437

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG   +  G  +  +R      F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIG---DGRGKGVEGSR------FFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F    +  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G     DFQ    K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D   + +  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNATAVIAVAYTEKVPMDDIREGMLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|153214069|ref|ZP_01949203.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
 gi|124115495|gb|EAY34315.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
          Length = 486

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 185 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S +AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 230 AILCIDDPVIRELIPRVS-----RQVITYGFSDDADVRIENYRQNGQQGQFTVVRKGKAN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 285 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 339

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 340 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 394

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 395 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 455 GDLVLTQGAGDVG 467


>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
           L2-63]
          Length = 488

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I  DSR +    AF  +KG   DGH +   AV+KGA  +V++  +   + S  + V 
Sbjct: 22  ISDIIYDSRKVEKGTAFVCLKGYTSDGHRYAKSAVEKGASALVISDSLDFEVPS-DVAVV 80

Query: 87  GVDDVLGALNKLAV 100
            V+D   AL+ +++
Sbjct: 81  KVEDTRYALSLMSI 94


>gi|169797488|ref|YP_001715281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AYE]
 gi|169150415|emb|CAM88312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii AYE]
          Length = 455

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 162 LVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 214

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++AD  L          W+   LQ
Sbjct: 215 VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL----------WLARGLQ 264

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 265 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 314


>gi|111018100|ref|YP_701072.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
 gi|123145349|sp|Q0SHS2|MURC_RHOSR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110817630|gb|ABG92914.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
          Length = 503

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 113/295 (38%), Gaps = 34/295 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLA 154
           + AV A L      + ++G+ GKT+T  ML +AL       ++A  G  N          
Sbjct: 102 RPAVLASLMQGHRTLLVSGTHGKTSTTSMLVVALQHCGFDPSFAVGGELNE--------- 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +   G  ++ ++   E         P + V+T +   HL  F   E       +  
Sbjct: 153 -AGTNAHHGSGDVFVAEADESDGSLLQYEPDVVVVTNVEADHLDYFGSTEAYIQVFDDFA 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNAD------------FQL 260
             L   G +    DD     L  +  A G+    +  +G +++AD             +L
Sbjct: 212 ARLSPGGLLVACLDDPGSAALAQRVAARGLPGVRVLGYGSAEDADGAFASVDGVEVGARL 271

Query: 261 RKWKQCSEQSWMEVQLQG-KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             ++       ++ QL G +S   V  G+ G HMA N L  L       ADVD  ++ ++
Sbjct: 272 LSFEARDVGGVLQFQLAGEQSPRTVRMGVPGRHMALNALAALLAAREAGADVDEILEGIA 331

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI--SPHGEGRR 371
            F    G  +R++    +    + D+ Y  +P  ++A +   + +   PH   RR
Sbjct: 332 GF---GGVHRRFQFTGREHGVRVFDD-YAHHPTEVRAVLGAAADLVRQPHEADRR 382


>gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Plautia stali symbiont]
          Length = 495

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
          +++DSR+ A  + F A+ G H DG  FI  A+ +G   V+   +  AS G +
Sbjct: 25 MTLDSRAAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAVIAEAEGEASDGDI 76


>gi|260103187|ref|ZP_05753424.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|260083012|gb|EEW67132.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|328464729|gb|EGF36059.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           MTCC 5463]
          Length = 437

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 32/260 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG   +  G  +  +R      F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIG---DGRGKGVEGSR------FFVYE-- 156

Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                E R  FL +   P   ++T I   H   F    +  SA     +  +K   +F+ 
Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVW 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + LK           Y++G     DFQ    K+ +  S   V   GK + E   
Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +       +D   + +  F   +G  +R+    + G   +ID+ 
Sbjct: 264 HLFGDHSILNATAVIAVAYTEKVPMDDIREGMLTF---KGAKRRF-SEKDFGDIAVIDD- 318

Query: 346 YNANPASMKAAISVLSQISP 365
           Y  +P  M+A I    Q  P
Sbjct: 319 YAHHPTEMRATIQAARQKFP 338


>gi|302877580|ref|YP_003846144.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
 gi|302580369|gb|ADL54380.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
          Length = 466

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 151/384 (39%), Gaps = 52/384 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155
           LA   RLR     IA+ G+ GKTTT  +    +A      T+  IG   N  G    L  
Sbjct: 98  LAELMRLRQG---IAVAGTHGKTTTTSLTASVLARGGFDPTF-VIGGKLNSSGTNAKLGT 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                  G F +  +   +  FL   ++P +AV+T I   H+  +     ++  A  +  
Sbjct: 154 -------GEFIVVEADESDASFL--YLQPILAVVTNIDEDHMETYGHDFAKLKQAFIDFI 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L   G   +  DD+    +  +      K + ++G S++A  Q+R      E   M  
Sbjct: 205 EHLPFYGRAMVCVDDANIREILPRV----TKPVTTYGFSEDA--QIRAINVRHEGGKMCF 258

Query: 275 QLQ------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             Q       + + +  +  G H   N L  + I   +    D  I AL  F   EG G+
Sbjct: 259 TAQCRQNGTPRDLVITLNLPGRHNVLNALAAIAIALEIGVADDAIIAALDEF---EGVGR 315

Query: 329 RYR----CALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           R++     AL + G FTLID+ Y  +P  M A ++ +    P   GRR+ VL        
Sbjct: 316 RFQRYGEIALPEGGRFTLIDD-YGHHPVEMAATLAAVRGAFP---GRRL-VLAFQPHRYT 370

Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL----- 435
            ++    D  ++L   +   ++ V+ +G   L   D       +  +   + +F+     
Sbjct: 371 RTRDLFEDFVKILCGVDALLLAEVYAAGETRLVAADGRAMMHALRLAGQSEAIFVEHIAD 430

Query: 436 ---FIQSSLVDGDVVVVKSSNSCG 456
               I     DGDVVV   + S G
Sbjct: 431 MPQSIMQWARDGDVVVTMGAGSIG 454


>gi|168208619|ref|ZP_02634244.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712998|gb|EDT25180.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 440

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T++V P + V+T+I+  H++   + IEEIA  K     G+ 
Sbjct: 136 VDYAVLEVG---LGGRLDATNVVLPEVVVLTSISLDHMNILGNTIEEIAKEKC----GII 188

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           K+G   ++Y  ++   E++K + + LG    +      +N      K  Q      +EV 
Sbjct: 189 KSGVPVISYPQEEKAIEVIKERCNELGCNLEVVDTEDIRNIIIDKEKHVQ-----KIEVS 243

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTL 300
           L+ + +++    +G H  +N L+ L
Sbjct: 244 LEDEILKIDLGLLGDHQVKNFLVAL 268


>gi|114763027|ref|ZP_01442457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544351|gb|EAU47359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           HTCC2601]
          Length = 467

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L S  +     G    +IG  +     P +    + EL  
Sbjct: 122 VVAVTGSNGKSTTSALIHHILQSAGRGSQLAG----NIGRGVLDIEPPEEGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGLGGYFAAKRRLF 218


>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
 gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
          Length = 443

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 12/151 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  ++              G+  N +   L +A
Sbjct: 90  ISEIEFAGRY-TNSKMICITGSNGKTTTTSLIYHIFKDAGYDVGLAGNIGNSLA--LQVA 146

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
             P    + I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 147 EDP--HAYYIIELSSFQLDNM----YNFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFF--ELLKAKSHAL 242
            +   K  +     DD     EL K   HA+
Sbjct: 201 IQNQTKDDSFIYWNDDPVIKKELKKYDVHAV 231


>gi|4033456|sp|O51926|MURC_BUCAP RecName: Full=Putative UDP-N-acetylmuramate--L-alanine ligase;
           AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 138/331 (41%), Gaps = 65/331 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFGIF 165
           IA++G+ GKTT   M+   L+  K     I      S N+H             + F  +
Sbjct: 120 IAVSGTHGKTTLLAMIFDILNQNKLDPTVINGGLIKSINSH-----------AKLGFSKY 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +  +   +  FL   + P  A+IT I P H+ N++G           F+ L+KT   FL
Sbjct: 169 FIAEADESDGSFLC--LNPTTAIITNIEPDHIDNYNG----------EFKLLKKTFLDFL 216

Query: 226 NYDDSF-FELLKAKSHAL-----GIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QL 276
           N   S+   +L   + A+      IK  + ++G +K+A+F++  +KQ    S   +  + 
Sbjct: 217 NKIPSYGIAILCTDNKAILNILPKIKCKVITYGFNKSAEFRITSYKQSDFISNFTLIRKK 276

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------ 330
           Q  ++E++ +  G H A N    +   +      +   ++L  F   +G  +R+      
Sbjct: 277 QLNNLEIILNLPGEHNALNATAAIAFATYQKIPDEKIYQSLKNF---KGTSRRFEYVGKL 333

Query: 331 ---RCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGD 377
              + ++      LI++ Y  +P  +   I  + +            PH   R   +  D
Sbjct: 334 FIKKKSIQNKSVMLIND-YGHHPTELSETIKTIRKSWPKKNLIMIFQPHRYTRTRNLYFD 392

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             ++  LSQ   +D   +L++Y+ +  ++SG
Sbjct: 393 FIKI--LSQ---VDSLLILNVYSANESFISG 418


>gi|90423695|ref|YP_532065.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB18]
 gi|118595684|sp|Q216E0|MURD_RHOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90105709|gb|ABD87746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB18]
          Length = 466

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L   A  +AITG+ GK+TT    T  ++ + +          +IG  +     P      
Sbjct: 110 LAPDAPFVAITGTNGKSTT----TALIAHLLRQAGFDTQMGGNIGTAILSLEPPAAGRVH 165

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    +     LT  + P + ++  +   HL     IE  A+ K  +  G+   GT 
Sbjct: 166 VVEMSSYQID----LTPSLDPSVGILLNVTEDHLDRHGSIEHYAAVKQRLVAGVPDGGTA 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTI 247
            +  DD  F    A+  AL  KT+
Sbjct: 222 IVGVDDD-FSATAAERVALDGKTV 244


>gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 485

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 30/228 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR    Q  FF +KG ++ G +++  A+ +G    +   D       + IP   V+
Sbjct: 38  LSYDSRDADNQTLFF-VKGANFKG-EYLQSALNQGLQAYISEVDY-----EVGIPAIIVN 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+  A++ +A+A     + K  ++A TG+ GKTT+       L    KT A + + N  +
Sbjct: 91  DIKHAMSIIAMAFYDNPQDKLKLLAFTGTKGKTTSAYFAYHILKQSHKT-AMLSTMNTTL 149

Query: 148 -GVPLTLARMPVDVDFGIFEL-------GMSHL-GEIRFLTHLVRP------HIAVITTI 192
            G     +++       +F++       GM+HL  E+    +LV         + V   I
Sbjct: 150 DGQTFFKSQLTTPESLDLFKMMAECVSNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNI 209

Query: 193 APAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +P H+        E+    K  +   +E +  + +N D   F +LK +
Sbjct: 210 SPDHIGPIEHPNFEDYFYHKRLL---MENSRAVIINSDMDHFHILKEQ 254


>gi|331090022|ref|ZP_08338912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330402936|gb|EGG82502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 447

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 21/175 (12%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +   SIP++G  ++          A +  K  ++AITG+ GKTTT  +L 
Sbjct: 76  VPTDLPIVEKMREKSIPIWGEIEL----------AYVFGKGDVLAITGTNGKTTTTALLG 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             +   K+    +G    +IG P T +A+   D    + E+    L  I    H   P +
Sbjct: 126 QIMQDYKEHAYIVG----NIGTPYTSVAQETTDDAVIVAEISSFQLETI----HTFHPKV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + I  I P HL+    +E    AK  I E   K     LNY+D   +    K+ A
Sbjct: 178 SAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNYEDDELQKFGEKTAA 232


>gi|323489497|ref|ZP_08094724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
 gi|323396628|gb|EGA89447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
          Length = 454

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDV 160
           A L S+A  I ITGS GKTTT  +L   L+   K     G    +IG V   +A      
Sbjct: 106 AYLISEAPFIGITGSNGKTTTTTLLFHMLNQDNKNPLIAG----NIGTVASGVAEKAKPE 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           +  + EL    L      T   RP IA+IT I  AHL     IE+  ++K ++
Sbjct: 162 NVIVTELSSFQLKG----TEAFRPTIAIITNIYEAHLDYHGSIEDYRASKMKL 210


>gi|297243134|ref|ZP_06927072.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
 gi|296889345|gb|EFH28079.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
          Length = 472

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR-MP-----VDVDF 162
           I+ I+G+ GKTTT  M+T  L       +      N   GV   LA+ MP     ++ D 
Sbjct: 70  IVLISGTNGKTTTTRMVTSMLRDAGLNVFTNPTGSNFTRGVVAALAKTMPAFGTKLNADI 129

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL  ++   + F+   ++P  +++  +    L  F  I+  A   + + E  E  GT
Sbjct: 130 AVLELDEAY--AVHFVNQ-IKPRYSLLLNVMRDQLDRFGEIDTTAKLLSNVAEATE--GT 184

Query: 223 IFLNYDD 229
           + LN +D
Sbjct: 185 VVLNRED 191


>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++     S        G+  N + + + + 
Sbjct: 90  ISEIEFAGRY-TDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQVAME 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +     D+ + EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 149 KH----DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYD 187


>gi|218134561|ref|ZP_03463365.1| hypothetical protein BACPEC_02464 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989946|gb|EEC55957.1| hypothetical protein BACPEC_02464 [Bacteroides pectinophilus ATCC
           43243]
          Length = 471

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 150/389 (38%), Gaps = 55/389 (14%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141
           IP+    ++LG +        + +  T + I G+ GKTTT  ML+ I L++       +G
Sbjct: 101 IPMMARAELLGQI--------MANYKTAVNIAGTHGKTTTTSMLSEILLAADADPTISVG 152

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                IG  + + R          +L ++   E         P + +I  +   HL  F 
Sbjct: 153 GILKDIGGNIRIGRS---------DLFVTEACEYTNSFLSFNPTMNIILNVKEDHLDFFK 203

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            + +I ++     E L + GT+ +N D   +E        L +K I        + +  R
Sbjct: 204 DLADIRASFRRFVERLPEGGTLIINSDIEDYEYF---CKGLNVKVITVGSDPDKSTYSAR 260

Query: 262 -----KWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                   +C        +  G     S++++  GI  H   N L  +     L   +  
Sbjct: 261 GIAYDDLGRCHYTLLKNGEPYGIGEESSIDLMVPGI--HNVYNSLAAIAAALELDIPIAA 318

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFF---TLIDESYNANPASMKAAISVLSQ------- 362
             K L+ F+   G  +R+     +G F   T++D+ Y  +P  +KA ++           
Sbjct: 319 IKKGLAEFY---GTNRRFE---RKGVFNGVTVVDD-YAHHPDEIKATLAAAGHYPHKTLW 371

Query: 363 --ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R   +L       ELS +  + LA++ +    +   +S   ++    AL  
Sbjct: 372 VAFQPHLYSRTKLLLDRFA--AELSAADKVILADIYAARETNTYGISSEDLMNKIKAL-- 427

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +Y  T D +  F+Q + ++GD+++ 
Sbjct: 428 GTECYYFHTFDEIEKFLQKNCINGDLLIT 456


>gi|169634628|ref|YP_001708364.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii SDF]
 gi|260556380|ref|ZP_05828599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
 gi|169153420|emb|CAP02557.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii]
 gi|260410435|gb|EEX03734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
          Length = 455

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 162 LVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 214

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++AD  L          W+   LQ
Sbjct: 215 VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL----------WLARGLQ 264

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 265 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 314


>gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
          Length = 511

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 149/382 (39%), Gaps = 49/382 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84
           V  +  DSR   P   F  + G   D H F+   ++ G  ++V   D+   + +  L+  
Sbjct: 23  VTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVRVLVTERDIEEELAASGLAEH 82

Query: 85  VFGVDDVLG---ALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             G   +L    A   LA+ +  R     SK   I +TG+ GKTTT  M+   L +  K 
Sbjct: 83  EMGRVTILKTAEARRSLALLSAARFGYPASKMITIGVTGTKGKTTTTHMIKAILEAAGKK 142

Query: 137 YACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------- 186
              IG+    I   V  T+   P   +       M+  G    +  +    I        
Sbjct: 143 VGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGCQYMIMEVSSQGIKMHRVDGL 202

Query: 187 ----AVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                + T I+P H+     +   E    K+ +   + + G + LN D  F E++K  S 
Sbjct: 203 AFDYGIFTNISPDHIGPDEHADFAEYLCCKSRLL-SMCRIGLVNLN-DGHFKEIVKDASC 260

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKSMEVVHHGI-GYHMAQNML 297
            L    +   G++K ADF+    +  S   ++  E  + G     V  GI G     N L
Sbjct: 261 RLYTYCVKEDGETK-ADFEASNVRYVSRPDFVGTEFDVTGNLDMDVRLGIPGLFNVDNAL 319

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGK----RYRCALNQGFFTLIDESYNANPASM 353
             L + S L    D  + AL       GR +      RC +      L+D ++NA   SM
Sbjct: 320 AALCVCSFLGLPKDRIVHALEHIRVN-GRMEIVYTSSRCTV------LVDYAHNA--VSM 370

Query: 354 KAAISVLSQISPHGEGRRIAVL 375
           ++ ++ L Q  P    RR+ V+
Sbjct: 371 ESLLTTLRQYHP----RRLVVV 388


>gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 485

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 132/326 (40%), Gaps = 39/326 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR++ P + FFA+ G   DG  F+  A++ GA  V  +       G L++P  
Sbjct: 22  VGGLAVDSRAVKPGDVFFALAGAKTDGARFVAAAIEAGAVAVAGDH---PPAGDLAVPFV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + +   AL   A     +   TI A+TG+ GKT+           +    A IG+    
Sbjct: 79  RLTNPRRALALAAARMFPQQPQTIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGT---- 134

Query: 147 IGV---------------PLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVRP 184
           IG+               P+ L R  +D    I   G++HL       G  +F    VR 
Sbjct: 135 IGLVTPTRSVYGSLTTPDPIALHRS-LDA---IAREGVTHLALEASSHGLDQFRLDGVRV 190

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYD-DSFFELLKAKSHAL 242
                T ++  H+     +    +AK  +F  L    G   ++ D D   E++ A + A 
Sbjct: 191 AAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVVDGGAAVISADHDCSAEVIDA-ARAR 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300
           G++ I S G++ +A   +R      +     + L   G++ +V    +G    +N L+  
Sbjct: 250 GLRLI-SVGRNGDAGAGIRLIAAAVDGFAQRLTLDHAGRNYQVHLPLVGEFQIENALVAA 308

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326
           G+V     D      AL       GR
Sbjct: 309 GLVIGTGGDPAAVFAALDHLEGAPGR 334


>gi|89099774|ref|ZP_01172647.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
 gi|89085521|gb|EAR64649.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
          Length = 695

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 25/166 (15%)

Query: 101 AARLRSKATIIAITGSVGKTTT---------KEMLTIALSSIKKTYA---CI--GSYNNH 146
           ++R  +   +IA+TG+ GKTTT         KE  T+ L+S    Y    CI  G  +  
Sbjct: 295 SSREEAAIPVIAVTGTNGKTTTSRLVKHFIEKEGTTVGLTSSDGVYVGEQCIDTGDCSGP 354

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           I     L+   VD+      L  +  G +R         I ++T ++  HL    GIE+ 
Sbjct: 355 ISARKILSHPKVDIAV----LESARGGILREGLAFRHCDIGIVTNVSEDHL-GLDGIEDF 409

Query: 207 A---SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           A     K  I E + + G   LN DD   E LK  S+  G K IY+
Sbjct: 410 AQLVKLKRLIPEVVIEGGYCILNADDP--ETLKMASYTKG-KVIYT 452


>gi|310657783|ref|YP_003935504.1| UDP-n-acetylmuramate--l-alanine ligase [Clostridium sticklandii DSM
           519]
 gi|308824561|emb|CBH20599.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           sticklandii]
          Length = 453

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+I  +   HL  FSG+E+I ++ A+    ++  G +  N DD    +LKA      
Sbjct: 170 PKIAIILNVEEDHLDYFSGLEQIEASFAKFASQVKPDGFVIANGDDE--NILKALKDV-- 225

Query: 244 IKTIYSFGKSKN 255
            KT   FG++KN
Sbjct: 226 DKTKIYFGRNKN 237


>gi|153814610|ref|ZP_01967278.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
 gi|145848104|gb|EDK25022.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
          Length = 454

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 21/175 (12%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +   SIP++G  ++          A +  K  ++AITG+ GKTTT  +L 
Sbjct: 83  VPTDLPIVEKMREKSIPIWGEIEL----------AYVFGKGDVLAITGTNGKTTTTALLG 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             +   K+    +G    +IG P T +A+   D    + E+    L  I    H   P +
Sbjct: 133 QIMQDYKEHAYIVG----NIGTPYTSVAQETTDDAVIVAEISSFQLETI----HTFHPKV 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + I  I P HL+    +E    AK  I E   K     LNY+D   +    K+ A
Sbjct: 185 SAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNYEDDELQKFGEKTAA 239


>gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus
           geothermalis DSM 11300]
 gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis
           DSM 11300]
          Length = 488

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASI 78
           +P   V G++  +  + P   F AI+G  +DGH F+     +GA  V+   +  D+ + +
Sbjct: 17  LPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARGAVAVLGEGLPADVASPL 76

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LS+P         A       +R      ++ +TG+ GKTTT
Sbjct: 77  PYLSVPNARAALADAAAALAGHPSR---ALKVVGVTGTDGKTTT 117


>gi|288929761|ref|ZP_06423604.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328862|gb|EFC67450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 443

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 12/132 (9%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +D  +G ++++  AAR  + A ++ ITGS GKTTT  ++     +        G+    I
Sbjct: 83  IDKGIGIISEIEFAARY-TDAKMVCITGSNGKTTTTSLIYHIFKAAGYNVGLGGN----I 137

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
           G  L L       ++ + EL    L  + RF     + HIAV+  I P HL  ++  ++ 
Sbjct: 138 GRSLALQVAEGAHEWYVIELSSFQLENMYRF-----KAHIAVLLNITPDHLDRYNYCMQG 192

Query: 206 IASAKAEIFEGL 217
              AK  I + L
Sbjct: 193 YVDAKMRILQNL 204


>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 614

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 157/394 (39%), Gaps = 43/394 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GI+ DSR + P + F  + G  +DGHDF L AV  GA  VV   ++     +  IP  
Sbjct: 115 VSGIADDSRVVLPGDVFVCVPGATFDGHDFALDAVAAGAVAVVCEGEIEGL--TDEIPQV 172

Query: 87  GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     AL K+A A       + T + +TG+ GKTTT  ++   L++   +   +G+  
Sbjct: 173 VVSSCAKALGKIAAAFYGSPSQQLTTVGVTGTNGKTTTTHLIQAILAANDVSCGVVGTVG 232

Query: 145 NHIG-----VPLT----------LARMPVDVDFGIFELGMS----HLGEIRFLTHLVRPH 185
             IG     VP T          LA M +D   G   + +S     LG +          
Sbjct: 233 YEIGDGKYEVPNTTPDALQTQQILAGM-IDAGAGACAMEVSSHALELGRVDECDF----D 287

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE---LLKAKSHAL 242
           +AV T ++  HL     +E+   AKA++F  L           D+F      ++A     
Sbjct: 288 VAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNAAYFIEAAGGGD 347

Query: 243 GIKTI-YSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +  I Y+   SK   AD  +   K    ++ + +Q      E V   +G     N+   
Sbjct: 348 RVPIITYATQPSKEGQADVFVSDVKLALFETTLTIQTPVGEFEAVCGVVGKINVTNIAAA 407

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   +D     +    P  GR +       Q F  ++D  Y   P ++K AI+ 
Sbjct: 408 VAVGVALEIPLDVIAAGVEEMTPVPGRMELID--EGQPFSVIVD--YAHTPDALKRAITS 463

Query: 360 LSQISPHGEGRRIAVLGD-----MCEMGELSQSF 388
           L   +           GD       EMGE++ ++
Sbjct: 464 LRAANVRNVITVFGCGGDRDASKRKEMGEIADTY 497


>gi|213155698|ref|YP_002317743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|215484924|ref|YP_002327163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|301346529|ref|ZP_07227270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB056]
 gi|301512504|ref|ZP_07237741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB058]
 gi|301594847|ref|ZP_07239855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB059]
 gi|332851488|ref|ZP_08433485.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332866813|ref|ZP_08437217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
 gi|226711875|sp|B7H1N2|MURD_ACIB3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711876|sp|B7I325|MURD_ACIB5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213054858|gb|ACJ39760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|213988566|gb|ACJ58865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|332729941|gb|EGJ61272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332734421|gb|EGJ65541.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
          Length = 448

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 40/239 (16%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L R  +D+  
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGN----------LGRPALDLLK 149

Query: 163 GIFELGMSHLGEIRFLT--HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              EL +  L   +  T  HL    +AV+  ++  HL     +     AK  IF+G +K 
Sbjct: 150 DQPELLVLELSSFQLETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK- 207

Query: 221 GTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +  N DD+    L       +S  L    +  +G  ++AD  L          W+   
Sbjct: 208 --VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL----------WLARG 255

Query: 276 LQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           LQ   KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 256 LQRLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 307


>gi|209696054|ref|YP_002263984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aliivibrio
           salmonicida LFI1238]
 gi|226711878|sp|B6ELH7|MURD_ALISL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|208010007|emb|CAQ80330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aliivibrio
           salmonicida LFI1238]
          Length = 442

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 166/434 (38%), Gaps = 60/434 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           ID+R   P +     +   + G    D++L A      L+V N  +  +   L   +   
Sbjct: 38  IDTRETPPGQEQLPEQVELHSGSWQQDWLLDA-----DLIVTNPGIALASSQLQPAIKKG 92

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
             V+G +   A A      A +IAITGS GK+T  + LT  +++       +G    +IG
Sbjct: 93  TPVVGDIELFAWAV----TAPVIAITGSNGKSTVTD-LTGEMANAAGVKTAVGG---NIG 144

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
               L  +  D D  + EL    L      T  ++   A    ++  H+  + G+E+   
Sbjct: 145 FA-ALDLLEQDADLYVLELSSFQLE----TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQ 199

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK  +F+  +      +N DD      K        KT+ SFG      F       C E
Sbjct: 200 AKLRVFDHAD---VCIVNRDD------KETYPDTADKTLISFG------FDTSDEYGCIE 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           ++      +  +  +  + +G     N+  +L  +++L A      K L       G   
Sbjct: 245 ENGRLFLAKNNTPIIAANELGLVGKHNIANSLVALALLDAAGVNTNKTLDTLKRYNGLTH 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELS 385
           R +          +++S   N AS  AA+S LS      EG+    +  +G   +  ELS
Sbjct: 305 RCQVVAEMNGVRWVNDSKATNVASTLAALSGLSI-----EGKLHLLVGGVGKGADFSELS 359

Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            + + +DL     +Y        G   + L    PRS      +TMD     +   L  G
Sbjct: 360 PALNELDLM----MYCFGE---DGVQFMPLD---PRS---RLCQTMDEAIELLSPELTFG 406

Query: 445 DVVVVKSSNSCGFY 458
           D+V++  S +C  +
Sbjct: 407 DMVML--SPACASF 418


>gi|118618794|ref|YP_907126.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium ulcerans
           Agy99]
 gi|166224709|sp|A0PTI6|MURC_MYCUA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118570904|gb|ABL05655.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium ulcerans
           Agy99]
          Length = 488

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 100/266 (37%), Gaps = 36/266 (13%)

Query: 125 MLTIALSSIKK--TYACIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           M  +AL    +  ++A  G       N H G            D+ + E   S    + +
Sbjct: 132 MAIVALQHCGRDPSFAVGGELGEAGTNAHHG----------SGDYFVAEADESDGSLLEY 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 PH+AV+T I   HL  +   E          E L   G + +  DD     L  
Sbjct: 182 T-----PHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPGGALVVCADDPGSAALAE 236

Query: 238 KSHALGIKTIY---SFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGY 290
           +S  LGI+ +    +          L  W+Q    +  ++QL G    +SM +     G 
Sbjct: 237 RSAELGIRVLRYGSAGHAGAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVP--GR 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           HMA N+L  L     + A V   +  L+ F   EG  +R+          + D+ Y  +P
Sbjct: 295 HMALNVLGALLAAIEVGAPVGEVLDGLAGF---EGVRRRFELVGTAESVRVFDD-YAHHP 350

Query: 351 ASMKAAI-SVLSQISPHGEGRRIAVL 375
             ++A + +V S +   G GR + V 
Sbjct: 351 TEVRATLEAVRSVVRQSGSGRLLVVF 376


>gi|78187343|ref|YP_375386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium luteolum DSM 273]
 gi|78167245|gb|ABB24343.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 491

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 112/293 (38%), Gaps = 47/293 (16%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMP 157
           V   L  + T I + G+ GKTTT  ++   L S  +K  +   G              +P
Sbjct: 113 VRRELIGRNTSIVVAGTHGKTTTTSIIAWLLESGGLKPGFLVGG--------------IP 158

Query: 158 VDVDFGIFELGMSHLG----------------EIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            +   G    G S  G                  +FL  L RP IA+I  +   H   F+
Sbjct: 159 ENFGIGCRPSGRSEAGFFVSEGDEYDTAFFDKRSKFL--LYRPDIALINNVEFDHADIFN 216

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +EEI  +   +   +   G + +N DD     + A +       + +FG ++  D+   
Sbjct: 217 SLEEIKRSFRLLVNLIPSKGALIVNGDDPVAMEVAAGARC----RLETFGLTEGCDWMAG 272

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 E S  +V  +G  ++  H  + G +   N + ++ + ++    ++   + L  F
Sbjct: 273 NIDVGEEGSTFDVYYKGSLLQRFHAPLFGNYNITNTVASIAVATLAGMTLEQVEEGLPGF 332

Query: 321 -HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             PK    +       +G  TL+ E +  +P +++  +  + +  P    RRI
Sbjct: 333 LRPKR---RMETIGTFEGNITLV-EDFAHHPTAIRVTLEAIRERWPR---RRI 378


>gi|212702358|ref|ZP_03310486.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
 gi|212674236|gb|EEB34719.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 141/365 (38%), Gaps = 40/365 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   RLR     +AI G+ GKTTT  +      +       I      IG  L +    
Sbjct: 98  LAELMRLRQG---VAIAGTHGKTTTTSLTASIFDTAGLDPTVI------IGGRLNVYGTN 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +  G + +  +   +  FL     P I V+T +   HL ++   + I  A  +    +
Sbjct: 149 AHLGSGHYLIAEADESDGSFLCLF--PIINVVTNVDEDHLDHYGTRQAIDDAFVQFMNKV 206

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQL 276
              G   +  DD     L  +      + + ++G +  AD QLR    +    S  EV  
Sbjct: 207 PFYGLNVVCGDDPGVRALLPRVK----RPVLTYGFA--ADNQLRAVLLESGMTSRFEVWR 260

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             + + EV     G H   N L  +G  +      +  ++ L+ F    G G+R+     
Sbjct: 261 DDQKLGEVTLPHPGRHNILNALAAIGAATAADIPFERCVEGLATFR---GVGRRFEFKGE 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELS 385
           +   T+ID+ Y  +PA + A ++   Q+           PH   R  A  G+ C++ ++ 
Sbjct: 318 RNGVTVIDD-YGHHPAEIAATLATARQVFPNRRLVVAFQPHRFSRTQAHFGEFCKVFDV- 375

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD 443
               +D   +  +Y  S   + G    +L   + +     V Y +T+D +   +   L  
Sbjct: 376 ----VDQLVLTEIYAASEKPIPGVSGESLAQGMRQVSETPVTYFQTIDAMVKGLDDILKP 431

Query: 444 GDVVV 448
           GDV++
Sbjct: 432 GDVLL 436


>gi|163752976|ref|ZP_02160100.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
 gi|161326708|gb|EDP98033.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
          Length = 450

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 45/265 (16%)

Query: 111 IAITGSVGKTTTKEML--TIALSSIKKTYACIG----SYNNHI---GVPLTLARMPVDVD 161
           + + G+ GKTTT  +L   +A S I  T A +G    +YN+++   G  +T+    V+ D
Sbjct: 115 LGVAGTHGKTTTSSILGHLLAESGINVT-AFLGGIAENYNSNLILKGNEITV----VEAD 169

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               E   S L         + P IA IT++   HL  +   E +  +  E  + ++  G
Sbjct: 170 ----EFDRSFLQ--------LSPDIACITSVDADHLDIYGEKEALQDSFIEFTKCIKPNG 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +F+  D              GI    ++G  + +D+ ++  +        E+    K +
Sbjct: 218 KLFVQEDIQL----------DGI----TYGFQETSDYHIKNIRIKHGAYVFEIVTPSKII 263

Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           E V   I G H   N L+   +  I+    D   KAL  F    G  +R+   + +  F 
Sbjct: 264 EDVQFYIPGRHNLLNGLVAFAMADIIGTPTDRLAKALGTF---AGVKRRFSYQIKKTDFV 320

Query: 341 LIDESYNANPASMKAAISVLSQISP 365
            ID+ Y  +P  + A    + ++ P
Sbjct: 321 FIDD-YAHHPTEINALHQAVREMYP 344


>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 436

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +KA IIAITG+ GK+T   ++T     + K          +IGVP+ L+ +  + +  +
Sbjct: 103 EAKAPIIAITGANGKSTVTTLVT----EMAKQAGIKVGMGGNIGVPV-LSLLNDEYELFV 157

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            EL    L     L  +     A I  I+  H+  ++  +EE   AK  I++  E    +
Sbjct: 158 LELSSFQLETTSSLNAVA----ATILNISEDHMDRYNNSLEEYRLAKLRIYDNAE---NV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +N +D     L+ ++    +K +  F +  NA++ +R
Sbjct: 211 IVNGEDRLTYPLETQA----VKKLIRFAEY-NAEYTMR 243


>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
 gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 153/404 (37%), Gaps = 91/404 (22%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +     F  I G   DGH +     +KGA  VVV  D+        + V  V+D  
Sbjct: 29  DSRKVENGSVFVCISGAVSDGHKYAAEVAEKGAAAVVVEKDVEV---PADVTVIKVEDTR 85

Query: 93  GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-- 148
            AL  ++ A       K  I+ ITG+ GKTTT  M+   L         IG+    IG  
Sbjct: 86  YALALMSAAYFGYPAEKLKIVGITGTKGKTTTTYMIKSILEETGHKVGLIGTIEAIIGEK 145

Query: 149 -VPLT------------LARMPVD-VDFGIFELGMSHLG---------EIRFLTHLVRPH 185
            +P               A M  +  D  + E+    L          EI   T+L R H
Sbjct: 146 KIPAANTTPESYTIHQYFAEMVKEGCDCVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDH 205

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
                 I P    +F   E+    K  +F+   + G    N DD +FE + + +      
Sbjct: 206 ------IGPNEHKDF---EDYKRCKGLLFKQC-RLG--IANVDDKYFEDVFSGATC---- 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG S+ AD +    +  S   ++              G+ YH+A  M   + I   
Sbjct: 250 KVETFGFSEKADLRAENVQLVSRPGYL--------------GVAYHVAGVMDFDVEIDIP 295

Query: 306 LTADVDTAIKALSVFH----PKE----------GRGKRYRCALNQGFFTLIDESYNANPA 351
            T  V  ++ A+SV      P E           +G+     ++  F  +ID ++NA   
Sbjct: 296 GTFSVYNSLTAISVCRHFEVPAELIKDALKKAKVKGRIEMVKVSDDFTLMIDYAHNA--M 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMC----------EMGELS 385
           S+++ ++ L +  P    R + + G  C          EMGE+S
Sbjct: 354 SLESLLTTLKEYHPK---RLVCLFG--CGGNRSRDRRFEMGEVS 392


>gi|189029207|sp|A8LS63|MURC_DINSH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 464

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   E +     E    +   G      D    + L  +   +  +
Sbjct: 181 IAVVTNIDPEHMEHWGSFERLKDGFHEFVSNIPFYGLAVCCTDHPEVQALVGR---ITDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + +FG +  AD +       S  +  ++ L+ +   +    +   G H   N L  + +
Sbjct: 238 RVVTFGFNTQADVRAVNLTYKSGVAHFDILLRNEGQVISGCTLPMPGDHNVSNALAAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D    AL+ F    G  +R+      G  T+ID+ Y  +P  + A +    Q
Sbjct: 298 ARHLGMKRDEIRAALAGF---AGVNRRFTKVAELGGVTIIDD-YGHHPVEIAAVLKAARQ 353

Query: 363 ISPHGEGRRIAVLGD--MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL 418
            S   EGR IAV        +  L + F     E   +  IS ++ +G   +  A +D L
Sbjct: 354 AS---EGRVIAVHQPHRFSRLASLFEDFCTCFNEA-DVVGISDIFAAGEDPIPGASRDDL 409

Query: 419 PRSIHVHYSE------TMDGLFLFIQSSLVDGDVVV 448
            + +  H           D L   I++    GD+VV
Sbjct: 410 VKGLIAHGHRHAVAVPDEDALEALIRAEAKPGDIVV 445


>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
 gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
          Length = 499

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           FG+ E+    L + R L    +  +AV + +   HL     +E+  +AKA +F      G
Sbjct: 184 FGVMEVSSHALAQKRVLG--CQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFSPDYLQG 241

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD + + L  +   +G    +++     AD         +     ++     ++
Sbjct: 242 RAIINIDDVYGQRLVDQ---IGPNQCWTYSIEGPADLYTSGLSYETAGVKGQLHTPKGTV 298

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E     +G     N+L  +G V  L   ++    AL+ F    GR ++   + +Q    +
Sbjct: 299 EFFSSLVGQFNVSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDISVI 358

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +D  Y   P S++   ++L    P  +G+   V G
Sbjct: 359 VD--YAHTPDSLE---NLLKAARPFVKGQMACVFG 388


>gi|153826877|ref|ZP_01979544.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229524386|ref|ZP_04413791.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
 gi|149739293|gb|EDM53549.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229337967|gb|EEO02984.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
          Length = 506

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S +AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSDDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|194336194|ref|YP_002017988.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308671|gb|ACF43371.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
          Length = 493

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 13/218 (5%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP IA+I  I   H   F  +E+I  +       +   GT+ +N DD     L+  S 
Sbjct: 196 LYRPDIAIINNIEFDHADIFDSLEDIKRSFRLFVNLIPGNGTLLVNGDDKV--ALEVASR 253

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299
           A     +  FG ++ +++        SE S  ++  QG  +  +   + G +   N L  
Sbjct: 254 AFC--RVERFGLTRESEWSACNLSADSEASTFDLLYQGTLLGSIRIPLFGNYNIMNSLAA 311

Query: 300 LGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +   +     V+  I+A+ +F  PK    +R            + E +  +P +++  + 
Sbjct: 312 IAAATHSGLSVEAIIRAMPLFKRPK----RRMEIVGTYAHNITLVEDFAHHPTAIRVTLE 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            L ++     GRRI    +          F  +LAE  
Sbjct: 368 ALGELY---TGRRIIACFEPRSNTTTRNIFQQELAECF 402


>gi|239502056|ref|ZP_04661366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB900]
          Length = 448

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 207

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++AD  L          W+   LQ
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL----------WLARGLQ 257

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 258 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 307


>gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus metallidurans CH34]
 gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 515

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 101/251 (40%), Gaps = 44/251 (17%)

Query: 33  DSRSIAPQEAFFA-IKGPHY---DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           D+R + P + FFA + G      DG   I  A+  GA  +V   D  A      +P   V
Sbjct: 35  DTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIVYEADNFAWPHDDRVPHLAV 94

Query: 89  DDVLGALNKLA--VAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                 L++LA  +AA     A    TI  +TG+ GKT+  + L   L       A IG+
Sbjct: 95  SH----LHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCATIGT 150

Query: 143 YNNHIGVP----LTLARMP--VDVDFGIFELGMSHLGEIRFLTHLVRPH----------- 185
             +  G P    LT    P  V +   + EL   H    R +   V  H           
Sbjct: 151 LGS--GFPDALKLTGFTTPDAVQLQASLAEL---HDAGARAVAMEVSSHGLEQGRVAGTG 205

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE-LLKAKSH 240
             +AV+T +   HL     + E  +AKA +F  +GL+      +N DD   + LL + + 
Sbjct: 206 FAVAVLTNLTQDHLDYHGTMAEYEAAKARLFAWDGLKAA---VINRDDGMGQRLLASNAV 262

Query: 241 ALGIKTIYSFG 251
           A+    +  +G
Sbjct: 263 AVSAPQVIEYG 273


>gi|229521231|ref|ZP_04410651.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229341763|gb|EEO06765.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 506

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S +AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSDDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           +++  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LDITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|183220592|ref|YP_001838588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910700|ref|YP_001962255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775376|gb|ABZ93677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779014|gb|ABZ97312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 463

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR+  K  II ITG+ GK+TT   LT  L   K   A +G    +IGVP T   +  ++D
Sbjct: 105 ARIFYKGPIIGITGTDGKSTTT-ALTYHLLQKKYPNAKMGG---NIGVPFTSFCL-ENLD 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L +   L    +   + I  +A  HL     +E  A AK +I    +K  
Sbjct: 160 YVVLELSSYQLDDSPNL----KLTASAILNLASDHLERHKTMESYALAKWKIQNLEDKDH 215

Query: 222 TIFLN 226
             F+N
Sbjct: 216 QCFVN 220


>gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 491

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 153/399 (38%), Gaps = 48/399 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIGSLS 82
           +  I  DS+    +  F A+ G   DGH +I +A   GA + V++ +       ++  + 
Sbjct: 23  IEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVEIIQ 82

Query: 83  IPVF-GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              F  V+D   AL  ++         + TI+ ITG+ GKTT    +   L +   +   
Sbjct: 83  NSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDISCGV 142

Query: 140 IGSY-----NNHIGVPLTLAR-------MPVDVDFGIFELGM--SHLGEIRFLTHLVRPH 185
           IG+      N +     T          M   VD G+  L M  S  G +    H +   
Sbjct: 143 IGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGIEFD 202

Query: 186 IAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            A+ T ++  H+        E     K+ +F  + K   I ++ ++S   + K+K +   
Sbjct: 203 YAIFTNLSHDHIGEKEHPTFEHYRECKSMLF-AMSKYSIINIDDENSKVMIEKSKDYK-- 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               YS   S  +DFQ +     S  S M    +    + V +  G     N L T+ + 
Sbjct: 260 ---TYSIDSS--SDFQAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTIMLC 314

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF---TLIDESYNANPASMKAAISVL 360
             L     +    L   H K       R  +  GF     +ID  Y  N  S++  +  +
Sbjct: 315 EQLGLSYQSIYTGLEKAHVKG------RLQVIDGFTDIKVIID--YAHNEVSLENVLQTV 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ P    +R+ VL     +G  SQ+   +LA V S Y
Sbjct: 367 KELKP----KRLIVL--FGSVGTRSQNRREELATVASKY 399


>gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
 gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
          Length = 495

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           D+R I+    F  IKG ++DGH   + A  K A  +VV  D V   G   I V  V++  
Sbjct: 36  DNRKISEGSLFICIKGANFDGHSCAMEAANKKAAAIVVEHD-VELPGDCKIAVIRVENTR 94

Query: 93  GALNKLAVA 101
            A+  ++ A
Sbjct: 95  YAMAFISAA 103


>gi|3122406|sp|O07669|MURD_ENTHR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2222673|emb|CAA74234.1| murD [Enterococcus hirae]
          Length = 460

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+AV+T I  AH+      +E   AK  + + + +   + LN++      L  K+ A 
Sbjct: 186 RPHVAVVTNIYEAHIDYHKTRKEYVKAKWHLQQNMTEKDYLILNWNQEELRELSKKTKA- 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301
              T+  F   +    +L K   CS    +    Q K M++   G+ G H  +N L  + 
Sbjct: 245 ---TVLPFATEQ----KLPKG-ACSLDGSIYYN-QEKIMDITELGVPGSHNVENALAAIS 295

Query: 302 IVSILTADVDTAIKALSVFH 321
           +  +     +    AL  FH
Sbjct: 296 VAKLYGISNEAIKNALHHFH 315


>gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
 gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
          Length = 481

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 21  IVPQGF---------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           I+ QG+          + I  DSR  A +++ F +KG  +   +F++ A+ +G G  V  
Sbjct: 20  IIDQGYYHYNYSHVVFDTICYDSRK-AKEKSLFFVKGAAFK-KEFLISAISQGLGWYVAE 77

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
            D       + IP   V D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 78  KDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAFTGTKGKTT 124


>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
           japonicus Ueda107]
 gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
           japonicus Ueda107]
          Length = 455

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 38/266 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A ++AITGS  K+T    +T  +  + K      +   ++G P  L  +  D++  + 
Sbjct: 114 ARAPMVAITGSNAKST----VTTLVGEMAKAAGIQVAVGGNLGTP-ALELLRDDIELYVM 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +  L       +A I  I+  HL  +  +     AK  I+ G E    I +
Sbjct: 169 ELSSFQLETVNKLNA----KVATILNISADHLDRYPDMRAYILAKLRIYFGAEN---IVV 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEV 283
           N +D    +L     A+G K +Y  G++    F L  R  ++   ++   + L  + +++
Sbjct: 222 NRND----ILTHPPLAVGAKPVYFGGRADFGAFGLLDRDGEEYLAKNLTPL-LPARELKI 276

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +       +   + AL     +E RG R+RC     +   ID
Sbjct: 277 R----GRHNIDNALAALALGDAAGIPMAAMLGAL-----REFRGLRHRCE----YVASID 323

Query: 344 --ESYN----ANPASMKAAISVLSQI 363
             E YN     N  +  AAI+ L+++
Sbjct: 324 GVEFYNDSKGTNIGATLAAINGLARV 349


>gi|227875257|ref|ZP_03993399.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
 gi|227844162|gb|EEJ54329.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
          Length = 458

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG 163
           RSK  ++A+ G+ GKTTT  ML+ AL  +    +  IG      G   T AR+     F 
Sbjct: 86  RSK-DLLAVAGAHGKTTTSAMLSKALWDVGADPSFAIGGVILEYG---TGARLGRGRAF- 140

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S   +  FL +   P + V+T I P HL ++   E    A  +    +   G I
Sbjct: 141 VIEADES---DGSFLNYA--PLVEVLTNIEPDHLDHWGSREAFDQAFVDFTARIRPGGAI 195

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG 251
               DD+    L  + H+      Y FG
Sbjct: 196 VACGDDAGIRRLAPRFHSGAALVSYGFG 223


>gi|253568794|ref|ZP_04846204.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
 gi|62900586|sp|Q8A256|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
          Length = 444

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G+    IG  L L       D+ I 
Sbjct: 100 TDAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGN----IGKSLALQVAEEHHDYYII 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +  + T   F
Sbjct: 156 ELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQN-QTTDDAF 210

Query: 225 LNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
           + ++D    ++K +    G+K  +Y F   K
Sbjct: 211 IFWNDD--PIIKQELAKHGLKAHLYPFAAVK 239


>gi|317501229|ref|ZP_07959434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897405|gb|EFV19471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 454

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 21/175 (12%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +   SIP++G  ++          A +  K  ++AITG+ GKTTT  +L 
Sbjct: 83  VPTDLPIVEKMREKSIPIWGEIEL----------AYVFGKGDVLAITGTNGKTTTTALLG 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             +   K+    +G    +IG P T +A+   D    + E+    L  I    H   P +
Sbjct: 133 QIMQDYKEHAYIVG----NIGTPYTSVAQETTDDAVIVAEISSFQLETI----HTFHPKV 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + I  I P HL+    +E    AK  I E   K     LNY+D   +    K+ A
Sbjct: 185 SAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNYEDDELQKFGEKTAA 239


>gi|296532823|ref|ZP_06895497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseomonas
           cervicalis ATCC 49957]
 gi|296266852|gb|EFH12803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseomonas
           cervicalis ATCC 49957]
          Length = 608

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGI 164
           S A  + ITG+ GK+TT  +L   L+   +  A  G+     IG+P+      ++ D GI
Sbjct: 265 SAARFVGITGTNGKSTTTALLHHLLARAGRAVAVGGNLGPAAIGLPI------LNQD-GI 317

Query: 165 FELGMS-----HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           + L MS      L E+RF        + ++  + P H+     +   A+AKA +F+    
Sbjct: 318 YVLEMSSYMLERLAELRF-------DLGLMLNLTPDHIDRHGDMPGYAAAKAHLFDRQGG 370

Query: 220 TGTIFLNYDDSF 231
                +  DD +
Sbjct: 371 GDLAIIGMDDEW 382


>gi|262037242|ref|ZP_06010724.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
 gi|261748714|gb|EEY36071.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
          Length = 447

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 115/275 (41%), Gaps = 28/275 (10%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ +  + +  + A+L +K   IA+ G+ GKTTT  M+++A      T          I
Sbjct: 87  VENGIKKIKRGELLAQLMNKFEGIAVAGTHGKTTTSSMMSVAFLEKDPT----------I 136

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +  +  +   G  E  ++   E       ++P  +V+T + P HL +    E I 
Sbjct: 137 VVGGIIPEIQSNSKIGNSEYFIAEADESDNSFLFIKPKYSVVTNVEPDHLEHHGTYENIK 196

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS---HALGIKTIYSFGKSKNADFQLRKWK 264
            +  +  +  EK   +  + +D     +K K+   +++  + ++ F  +      +    
Sbjct: 197 KSFEKFIDSTEKLAILCKDCEDMSTLNIKNKNIIWYSIKKEDVHIFATN------ITVKD 250

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            C+     EV   GK++ E      G H   N L  + +      ++DT  + L+ F   
Sbjct: 251 GCTH---YEVIKNGKNLGEFTLCIPGEHNVSNSLPVIYLADEAGCNMDTVKERLAQF--- 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +G  +RY+   ++    +ID+ Y  +P  +K  I 
Sbjct: 305 KGANRRYQVIYDKN-LRIIDD-YAHHPTEIKVTIE 337


>gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus uberis 0140J]
 gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus uberis 0140J]
          Length = 482

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +     FFA KG  +   D++  A+ +G    V   D       LSIP   V 
Sbjct: 38  LSYDSREVDADTLFFA-KGAQFKV-DYLKKAIDQGLQAYVSEIDY-----QLSIPAIIVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSIIAMTFYGNPQEKLKLLAFTGTKGKTT 124


>gi|84489390|ref|YP_447622.1| UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84372709|gb|ABC56979.1| predicted UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 447

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFG 163
           +S  TII ITG+ GKTT+  +    L       + +   N   G+  +  +   D  D+G
Sbjct: 52  KSADTIILITGTNGKTTSNNLTNHILRDENIVLSNLMGANMIQGIVSSYIKDTKDHYDYG 111

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TG 221
           +FE+     G +  +   ++P   ++T      L  +  IEEI     E+ + +++  T 
Sbjct: 112 VFEVDE---GSMPRVIKDLKPDYILVTNFFRDQLDRYGEIEEIVD---EVRKSIKQVPTA 165

Query: 222 TIFLNYDDSF 231
           T+ LN DD +
Sbjct: 166 TLILNADDPY 175


>gi|329115578|ref|ZP_08244300.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
 gi|326695006|gb|EGE46725.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
          Length = 498

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+V+T + P HL ++   E + +A  +    +   G   L  D    + +  +   L   
Sbjct: 199 ISVVTNMDPEHLDHWGSPEAMEAAYDQFVSNVPFYGFAVLCIDHPAVQQMIPR---LSDH 255

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG------IGYHMAQNMLM 298
            I ++G S  AD +  K       +  EV L  + S      G      +G H  QN L 
Sbjct: 256 RIVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRHTRKAGPFRLPMLGSHNVQNALA 315

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + + +    D     L+ F    G  +R+      G  T+ID+ Y  +P  + A + 
Sbjct: 316 AIAVATEMDISDDVIRSGLASF---RGVKRRFTRTGEAGGITVIDD-YGHHPVEIAAVLK 371

Query: 359 ---------VLSQISPHGEGRRIAVLGDMC 379
                    V++ + PH   R   +  D C
Sbjct: 372 AARQAGANHVIAVMQPHRYSRLKILFSDFC 401


>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
 gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
          Length = 496

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 144/379 (37%), Gaps = 56/379 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR++     F A+ G   DGHD++  AV+ GA  V+V+  +  S     + V  V+
Sbjct: 29  VTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSKPVEIS---SDVCVITVE 85

Query: 90  DVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           D   A+  +A          +   +I +TG+ GKTTT  M+   L +       IG+ + 
Sbjct: 86  DTRAAM--MACVPYFFDYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVGVIGTVHI 143

Query: 146 HIG---VPLTLARMPVDVDFG-----IFELGMSH-----------LGEIRFLTHLVRPHI 186
            IG    P+     P  VD       + E G++H           LG +  + +      
Sbjct: 144 MIGDTSYPIH-NTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY----DT 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKAKSH 240
           AV T +   HL      E   +AK ++FE + K   +       +N DD++   +  K+ 
Sbjct: 199 AVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRVVEKTT 258

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I ++    +            + S   V   G    V  +  G     N L  +
Sbjct: 259 A----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 314

Query: 301 G---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           G   +  I   D+D A+K  S        G+       Q F  ++D  Y   P  ++  +
Sbjct: 315 GACLLEGISMEDIDKALKTFSAV-----PGRFELIEEGQPFAVVVD--YAHTPDGLENIL 367

Query: 358 SVLSQISPHGEGRRIAVLG 376
                I    E R I V G
Sbjct: 368 QTAKAIQ---ENRIIVVFG 383


>gi|262066314|ref|ZP_06025926.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380009|gb|EFE87527.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 463

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 133/332 (40%), Gaps = 48/332 (14%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KG+  V+ +T +  +    +   +   + +  L +  + A+L ++ T 
Sbjct: 50  YNEHD---EENVKGSDFVIASTAIKETNPEYA---YAKKNGIKILKRGELLAKLLNRETG 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  +     T    G           L  +  +   G  E  ++
Sbjct: 104 IAIAGTHGKTTTSSMLSAVMLKKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              E       + P  +VIT I   HL     +E I  +  E     +K   I +   N 
Sbjct: 154 EADESDNSFLFMNPEYSVITNIDADHLDVHGNLENIKKSFIEFILHTQKESIICMDSKNL 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGK-SME 282
            D+  +L + KS      T YS  K +NA+   +  +  + ++  EV    +L+G+ S+ 
Sbjct: 214 MDAISKLPEEKS-----VTTYSI-KDENANICAKNIRIVNRKTIFEVYVNKELKGEFSLN 267

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---- 338
           +     G H  QN L  + +      + +   +AL+ F   +G  +RY    +Q      
Sbjct: 268 IP----GEHNIQNSLPVIYLALKFGLNKEEIQEALNQF---KGSKRRYDVLYDQELENGY 320

Query: 339 ------FTLIDESYNANPASMKAAISVLSQIS 364
                   ++D+ Y  +P  +KA +  +  + 
Sbjct: 321 GNKTKKVRIVDD-YAHHPTEIKATLKAIKSVD 351


>gi|313638769|gb|EFS03857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria seeligeri FSL S4-171]
          Length = 122

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++P +++  +     +   G+ + + VL DM E+GELS   H + AEVL    I  ++L 
Sbjct: 1   SSPTALQTVLKTFMHMDSKGKPKYL-VLADMLELGELSVPLHQESAEVLEEGTIEKIFLY 59

Query: 408 GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G  + A        I    V + +T + L   +   +   + ++VK S   G   ++  L
Sbjct: 60  GDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKEITGNEWILVKGSYGMGLKDVVENL 119

Query: 465 L 465
           +
Sbjct: 120 I 120


>gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
 gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
          Length = 438

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 48  RPAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 106

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 107 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 152

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 153 FDSFVERIVPGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 212

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 213 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 270

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 271 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 325


>gi|184156588|ref|YP_001844927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ACICU]
 gi|332874928|ref|ZP_08442779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
 gi|226711877|sp|B2I1V6|MURD_ACIBC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183208182|gb|ACC55580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ACICU]
 gi|322506475|gb|ADX01929.1| murD [Acinetobacter baumannii 1656-2]
 gi|323516354|gb|ADX90735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332736871|gb|EGJ67847.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
          Length = 448

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 111/281 (39%), Gaps = 34/281 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 207

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++AD  L          W+   LQ
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTL----------WLARGLQ 257

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              KS ++   G+  H   N L  L +   +   +++ ++ L  F   E R +  +   +
Sbjct: 258 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKRFKGLEHRCEYVKTVRD 315

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             ++   ++S   N  +  AAI  L       +G+   +LG
Sbjct: 316 VRYY---NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILG 353


>gi|148980586|ref|ZP_01816133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
 gi|145961169|gb|EDK26485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
          Length = 438

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 147/360 (40%), Gaps = 55/360 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GK+T  + LT  L+        +G    +IG+P           + + EL  
Sbjct: 110 VVAITGSNGKSTVTD-LTGVLAKAAGLNVGVGG---NIGIPALDLLELDADLY-VLELSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T  ++   A    ++  H+  + G+ +   AK  IF   + T    +N +D
Sbjct: 165 FQLET----TSNLKLAAAAFLNLSEDHMDRYQGMTDYREAKLRIFNNAQCT---IVNRED 217

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--G 287
                   +++      + +FG   N +F +     C    W+     GK +        
Sbjct: 218 K-------ETYPDQTMPLVTFGLD-NQEFGVSTIGGC---EWLVD--NGKPVLTTQDLTL 264

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDES 345
           +G H   N L++L ++  +  D + +++AL  ++     G  +RC +  ++     +++S
Sbjct: 265 VGRHNVANALVSLALLKQVGIDYNKSLEALKAYN-----GLTHRCQVVADKREIKWVNDS 319

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N AS  AA+S L       +G    ++G + +  + S+     L  VL+   +  V 
Sbjct: 320 KATNVASTLAALSGLEY-----QGTLYLLVGGVGKGADFSE-----LEPVLA--QLERVQ 367

Query: 406 LSGFHVLALKDA---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L  F     +DA   +P        +TM  +   I   LV GD+V++  S +C  +   N
Sbjct: 368 LCCFG----EDADQFMPLHPSAQKFDTMQQIIESISPQLVAGDMVML--SPACASFDQFN 421


>gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
 gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
          Length = 470

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 19/206 (9%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   + +  A       +   G    N D    + L  +   +  +
Sbjct: 185 IAVVTNIDPEHMEHYGSFDNLKDAFYNFVSNIPFYGLAICNTDHPEVQSLVGR---VDDR 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGI 302
            I ++G +K AD +    K     ++ ++ LQ ++    +V+    G +   N L  + +
Sbjct: 242 RIVTYGFNKQADVRAENLKFKKGCAYFDIALQSENAFIKDVMLPMPGDYNVSNALAAVAV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D      AL  F   +G  +R+         T+ID+ Y  +P  + A +S   Q
Sbjct: 302 SRHLGMDAKQIRNALLEF---KGVKRRFTHVGEINGVTIIDD-YAHHPVEISAVLSAAKQ 357

Query: 363 IS---------PHGEGRRIAVLGDMC 379
            +         PH   R   +  D C
Sbjct: 358 ATSGKVIAVHQPHRYSRLDNLFEDFC 383


>gi|293392861|ref|ZP_06637179.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
 gi|291424720|gb|EFE97931.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
          Length = 439

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A I+AITGS GK+T    +T  +  + K          +IG+P+ L  +  +    + 
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGWAVGVGGNIGLPV-LELLRQEYQLYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L E  +  H      A I  +   H+  +  G+++  +AK  I+E  +      
Sbjct: 158 ELSSFQL-ETTYSLHAA---AATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VCV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280
           +N DD+    ++            SFG +   D+ L   +Q  E +W+ V     L  + 
Sbjct: 211 VNADDALTMPVRGAD-----PRCISFG-ADVGDYHLN--RQLGE-TWLRVHGEKVLNTRE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G H   N L  L +   +     +++ AL+ +    G   R++  L+     
Sbjct: 262 MKLS----GRHNYTNALAALALADAVNIPRASSLTALTTY---AGLAHRFQRVLDHNGVC 314

Query: 341 LIDESYNANPASMKAAISVL 360
            I++S   N  S +AA++ L
Sbjct: 315 WINDSKATNVGSTEAALNGL 334


>gi|312114843|ref|YP_004012439.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219972|gb|ADP71340.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 477

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 117/325 (36%), Gaps = 60/325 (18%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----------TIALS 131
           +PVF   + L AL K             I +TGS GKTTT  M+           T+ + 
Sbjct: 91  LPVFSRAETLAALMK---------GYRTICVTGSHGKTTTTSMIGWVMEKAGLDPTVLVG 141

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            + +++      N  IG    +          + E   S    I+  T      I V T 
Sbjct: 142 GVLRSWGT----NARIGASRWM----------VVEADESDATFIKLPTE-----IGVATN 182

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSF 250
           I P HL  +  +E +  A       + +TG      D      L  +  A G +  + SF
Sbjct: 183 IDPEHLDYYGSVEALHEAFRTFLRQIPQTGVAVAGIDHPVVRELTQELAASGELPPLTSF 242

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHGI-----GYHMAQNMLMTLGIV 303
           G++ +A  ++            +V + GK  E  + H G+     G H A N    +   
Sbjct: 243 GRALDARVKIDNVVSQGASVMFDVVIAGKPGEPPLRHTGVKLQVPGAHNALNAAAAIAAC 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS----- 358
                  D     L+ F   EG  +R+          + D+ Y  +PA + A +S     
Sbjct: 303 LHAGLSADQIFDGLASF---EGVDRRFSPRGEWNGVAIYDD-YAHHPAEIAAVLSAARGA 358

Query: 359 ----VLSQISPHGEGRRIAVLGDMC 379
               V++ + PH   R  ++ G+ C
Sbjct: 359 ARGRVIAVVQPHRYSRLQSLFGEFC 383


>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
 gi|198272800|gb|EDY97069.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 90  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGLNVGLAGN-IGQSLAYQ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 145 VAECNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYGFEMQNYVDAKFRI 200

Query: 214 FEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +   +    IF N D     +++ + H  GI   Y     KN +
Sbjct: 201 IQNQTDDDAFIFWNDD----PIIQKELHKYGIHGQYFPFAEKNEE 241


>gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae]
          Length = 477

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CI 140
           +IPV    D+LG          L      + I G+ GKT+T  M  +AL +  K  +  I
Sbjct: 94  NIPVIRRSDLLG---------ELMEDHQQVLIAGTHGKTSTTSMAVVALQAAGKDPSFAI 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G   N  G   T A       F + E   S    +R+     +P IAV+T I P HL  F
Sbjct: 145 GGQLNKAG---TNAHDGTGKAF-VAEADESDASLLRY-----KPDIAVVTNIEPDHLDFF 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              E       +  E ++  GT+ +  DD     L  K
Sbjct: 196 KTSEAYFKVFDDFAERVQPGGTLVVCLDDPHAAALGEK 233


>gi|329122143|ref|ZP_08250751.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
 gi|327466950|gb|EGF12466.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
          Length = 463

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 127/322 (39%), Gaps = 37/322 (11%)

Query: 56  FILHAVQ--KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  Q  K A +++V      N   V       IPVF   D+L A+            
Sbjct: 55  FVGHNPQNIKNADVLIVSTAISKNNSEVLEAKKHKIPVFHRSDLLAAI---------LCG 105

Query: 108 ATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I + G+ GK+TT  M+  +   + K     +G   +++           + +F I E
Sbjct: 106 GKSICVAGAHGKSTTSAMIGKVFCDAEKHPTVVLGGKVDYLNGNSIFG----NGEFVIAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFL 225
              S    ++F      P I+VIT I   HL ++  +E I +A  +     +K  G   L
Sbjct: 162 ADESDGSFLKF-----NPFISVITNIEDDHLDHYLTVENIKNAFIKFINQTDKINGNTIL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+   E +K+    L   +  ++G S NA+++    +        +V  +   +  V 
Sbjct: 217 CIDN---EGVKSILPKLDENSYITYGTSDNAEYKAINKRYIDSYMMFDVYHKESFLGTVS 273

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I G H  +N L  L    I   D  T +K+L  F+   G  +R++     G   ++D+
Sbjct: 274 LMIPGTHNVRNALAALVTGLICGIDFKTIVKSLMEFN---GVKRRFQIKY-SGEVKIVDD 329

Query: 345 SYNANPASMKAAISVLSQISPH 366
            Y  +P  + + +    +   H
Sbjct: 330 -YAHHPTEIMSTLKAAKECGKH 350


>gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
 gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
          Length = 460

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 150/373 (40%), Gaps = 40/373 (10%)

Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+  I + +       IG   +++     L +       G F +  
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDYLKGSSCLGK-------GHFSVVE 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +  FL   + PH  VIT I   H+ ++  ++ + +A  E  E L + G   +  D+
Sbjct: 161 ADESDGSFLK--LHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPEAGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                + ++      +T  ++G   N D+  +           +V  +G ++  +   + 
Sbjct: 219 ENIRYVMSRVK----RTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGINISRISLRVP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G H   N L    IV+     V+     KAL  F    G  +R+    +     ++D+ Y
Sbjct: 275 GEHNVLNSLAAF-IVAHECCGVENRFITKALGKF---IGAKRRFETKGHVAGVWVVDD-Y 329

Query: 347 NANPASMKAAISVLSQISPHG--------EGRRIAVLGDMCEMGELSQSF-HIDLAEVLS 397
             +P  +KA +    ++  H            R ++L D     E + +F   D   +  
Sbjct: 330 AHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKD-----EFATAFTSADEIYMTD 384

Query: 398 LYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y+     ++G     + DA+  + +  VHY  ++D +   +   +   D+V+   + S 
Sbjct: 385 IYSSGEDPIAGIDGRTIPDAVEAATNKVVHYVPSVDDIPAVLAKIVRPNDLVITMGAGSI 444

Query: 456 GFY--RLINLLLE 466
             Y  +L+ +L E
Sbjct: 445 NQYGPKLLAILEE 457


>gi|301167446|emb|CBW27028.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 448

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------D 159
           SK  II++TG+ GKTTT  ++ +    + +   C      +IG PL    + V      +
Sbjct: 111 SKTKIISVTGTNGKTTTVTIIDL----LARGAGCSSFLGGNIGTPLATYALEVLSSKRSE 166

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                 EL    L  +       +  +A I  I+  H   +  + + A AK  I + L+ 
Sbjct: 167 ASLITLELSSFQLESM----DTFKSDVAAILNISANHGERYERVSDYARAKFSIADNLDD 222

Query: 220 TGTIFL 225
           +  IF+
Sbjct: 223 SDNIFV 228


>gi|114570630|ref|YP_757310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Maricaulis
           maris MCS10]
 gi|114341092|gb|ABI66372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maricaulis maris
           MCS10]
          Length = 474

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           + +  +I ITG+ GK+TT  ++   L +  +     G    +IG  +     P    + +
Sbjct: 113 KRRPKVIGITGTNGKSTTTALIGHILRATGRNVVVGG----NIGDAILAQSPPRPGSYYV 168

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     LTH +   +AV+  + P H+      +    AK  +FE  +  G   
Sbjct: 169 LELSSYQLD----LTHTLACDVAVLLNVTPDHIDRHGDFDGYFRAKKRLFEMQKPGGLAV 224

Query: 225 LNYDDS 230
           +  DD+
Sbjct: 225 VGIDDN 230


>gi|223937423|ref|ZP_03629328.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
 gi|223893974|gb|EEF60430.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
          Length = 477

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 16/220 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDF 162
           +SK   IAI G+ GK TT E++ +I   + +KT  C      H   P+ ++     ++DF
Sbjct: 105 QSKCLSIAIAGTNGKGTTAELVESILTHNNRKTSLC-----GHGARPVCSVVPETKEMDF 159

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + +     L   +F     RP +AV+  +A  HL  ++   +   A A +F+  +    
Sbjct: 160 LVLQANSFQLETTQFF----RPAVAVLMNLAHDHLDRYATHADYVRANARLFQNQQAFDW 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  +      L+     +  K I     ++ AD  L +    S     E  L      
Sbjct: 216 AIVQSE--ALAQLRLLDVPIPSKIITFSANNRRADIFLDRGLLISRLPGWEGPLWNMDEC 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           ++    G H A+N++  L +  +L   ++  + AL    P
Sbjct: 274 LLR---GSHNAENVMAALAVGHVLRIPLEEIVNALKTKAP 310


>gi|289574835|ref|ZP_06455062.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
 gi|289539266|gb|EFD43844.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
          Length = 437

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 47  RPAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 105

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 106 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 151

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 152 FDSFVERIVPGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 211

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 212 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 269

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 270 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 324


>gi|197105787|ref|YP_002131164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
 gi|226722943|sp|B4RFS2|MURD_PHEZH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|196479207|gb|ACG78735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
          Length = 469

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 26/163 (15%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           AA    +  I+AITG+ GK+TT               A IG      G  +   R+  ++
Sbjct: 109 AAPEHKRPKIVAITGTNGKSTTT--------------ALIGHICAEAGRDV---RIGGNI 151

Query: 161 DFGIFELGMSHLGEIRFL---------THLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +G+  L   H G +  L         T  +   + VI  I+P HL     ++E  +AK 
Sbjct: 152 GYGVLGLEDMHGGAVYVLELSSYQLDLTSSLHADVTVILNISPDHLERHGTMDEYVAAKR 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            I     K  T  +  DD + + +  +  A   +TI     SK
Sbjct: 212 RILLNQGKGDTAVIGVDDPWGQRICTEITAANRRTIVPVSASK 254


>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGMNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAECNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
            +            DD    +++ + H  GI    Y F + K
Sbjct: 202 IQNQTPDDAFIFWNDDP---IIQRELHKYGIHGHYYPFAERK 240


>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 449

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 33/260 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGI 164
           ++A ++ ITGS GKTTT  +    L++        G+    +   +     P+  V+   
Sbjct: 99  TEAKMVCITGSNGKTTTTLLTCHILTTAGIDAGLAGNVGRSLAAQVAEDAHPLYVVELSS 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           F+L     G   F     R  IAV+T I P HL  +    E    +K  I   + +   +
Sbjct: 159 FQLD----GMFDF-----RADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNM-RPQDL 208

Query: 224 FLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----VQLQ 277
           F+   DS     +A  H L  ++ +        AD  + +   C   +WME     VQL+
Sbjct: 209 FIYGLDS-----EAVGHRLRQVRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLE 263

Query: 278 GKSMEVVHHGI---GYHMAQN-MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +   +    I   G H   N M   L  + +  +D   A + L  F   E R +  R  
Sbjct: 264 NRQFRIAKQEISIQGRHNVYNAMAAILACMQVGVSDEKIA-EGLRTFPQVEHRLETVRVV 322

Query: 334 -----LNQGFFTLIDESYNA 348
                +N    T +D ++ A
Sbjct: 323 EGVTYINDSKATNVDSAWYA 342


>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 468

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 33/190 (17%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV--DDVLGALNKLAVAARLRSKATI 110
           H+ +L  + K  G    + ++V S G + S+P+     +  +  ++++  A R  + A  
Sbjct: 58  HNRVLE-ITKNVGKETASIEVVKSPGIADSVPIIKSLREKGIPVISEIEFAGRY-TNAKT 115

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGS GKTTT  MLT  +  ++     +G   N +G    +     + D+ I E+   
Sbjct: 116 ICITGSNGKTTTT-MLTYHI--LRNAGYNVGLAGN-VGKSFAMQVAEDNFDYYILEISSF 171

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  +    +  R  IA+IT I P HL  +                       F NY DS
Sbjct: 172 QLDGM----YSFRADIAIITNITPDHLDRYD--------------------YKFQNYVDS 207

Query: 231 FFELLKAKSH 240
            F +L+ ++ 
Sbjct: 208 KFRILQNQTE 217


>gi|259419223|ref|ZP_05743140.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345445|gb|EEW57299.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 469

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 11/193 (5%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   + +     E    +   G      D +  + L  +   +  +
Sbjct: 181 IAVVTNIDPEHMEHWGDFDRLRDGFYEFVSNIPFYGLAVCCTDHAEVQALVGR---ISDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + ++G +  AD +          +  ++ LQ +  ++    +   G H   N L  + +
Sbjct: 238 RVVTYGFNAQADVRAVNLTYKGGVAHFDILLQAEGQKIEGCTLPMPGDHNVSNALSAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +D    AL+ F    G  +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 298 CRHLGMKLDEIRAALAAFG---GVNRRFTKVGEVDGVTIIDD-YGHHPVEIAAVLKAARQ 353

Query: 363 -ISPHGEGRRIAV 374
            I   GEGR IAV
Sbjct: 354 AIGSEGEGRVIAV 366


>gi|295111740|emb|CBL28490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synergistetes
           bacterium SGP1]
          Length = 458

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 31/274 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  +I +TGS GK+T   ++   L++  +  A  G+      V        V ++   F+
Sbjct: 112 RGRLIGVTGSNGKSTVTALIGHMLNAAHRNVAVGGNLGRAASVFAGREFDAVVLELSSFQ 171

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L           TH +   ++++T +AP HL+     E   +AKA+I      +G   + 
Sbjct: 172 L---------EWTHTLSSCVSIVTNLAPDHLNWHGSYEAYVAAKAKILSLRAPSGWGIVQ 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D   E LKA     G + + +    +     +       E+    ++L G+   +  +
Sbjct: 223 --DRDVEALKAG----GEERVITLSWEERPKHGMAGHIFMGEEE-ATLRLNGEMTPLFRY 275

Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N+ M++  + +L  D D A   L  F P   R +R   A        +
Sbjct: 276 SETTLLGAHNLENVAMSVAALRLLGLDED-AKTLLKGFFPLPHRCER---AGTVDGVLYV 331

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           D+S   N A+   A++ L        GR++ +LG
Sbjct: 332 DDSKGTNVAASVTAMTALP-------GRKVVILG 358


>gi|56696080|ref|YP_166434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ruegeria
           pomeroyi DSS-3]
 gi|62900661|sp|Q5LU71|MURD_SILPO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56677817|gb|AAV94483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria pomeroyi
           DSS-3]
          Length = 466

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 134/353 (37%), Gaps = 51/353 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           ++A+TGS GK+TT  ++   LS   +     G+          + R  +D++ G      
Sbjct: 122 VVAVTGSNGKSTTSALIHHILSEAGRPVQLAGN----------IGRGVLDIEPGEEGSVV 171

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT 222
           + EL        R LT    P +AV T ++P HL    G+    +AK  +F EG      
Sbjct: 172 VLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAV 227

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I ++  +  + L    S   G   +     S+        W+  + + ++    +G+   
Sbjct: 228 IGVDESEGLY-LAGQMSEGPGDDRVIRVSVSRK--LTGPGWQVFARKGYLSEYRKGRQAG 284

Query: 283 VVH----HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +      G+ G H  QN          L      AI+A    +P  G   R +     G
Sbjct: 285 SIDLRDIRGLPGAHNHQNACAAYAACRALGLS-PKAIEAGMRSYP--GLPHRSQIVAEAG 341

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVL 396
             T +++S   N   + AA+  L         +RI  + G + + G ++ + +  LAEVL
Sbjct: 342 GVTYVNDSKATN---VDAALKALGAF------KRIRWICGGLQKEGGIA-ALNGGLAEVL 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y I     +GF       AL   +      TMD       +    GD V++
Sbjct: 392 KAYVIGRE-AAGF-------ALQLEVESEVCTTMDEAVARAMAEAEPGDTVLL 436


>gi|159044963|ref|YP_001533757.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
 gi|157912723|gb|ABV94156.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
          Length = 470

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   E +     E    +   G      D    + L  +   +  +
Sbjct: 187 IAVVTNIDPEHMEHWGSFERLKDGFHEFVSNIPFYGLAVCCTDHPEVQALVGR---ITDR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + +FG +  AD +       S  +  ++ L+ +   +    +   G H   N L  + +
Sbjct: 244 RVVTFGFNTQADVRAVNLTYKSGVAHFDILLRNEGQVISGCTLPMPGDHNVSNALAAVAV 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D    AL+ F    G  +R+      G  T+ID+ Y  +P  + A +    Q
Sbjct: 304 ARHLGMKRDEIRAALAGF---AGVNRRFTKVAELGGVTIIDD-YGHHPVEIAAVLKAARQ 359

Query: 363 ISPHGEGRRIAVLGD--MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL 418
            S   EGR IAV        +  L + F     E   +  IS ++ +G   +  A +D L
Sbjct: 360 AS---EGRVIAVHQPHRFSRLASLFEDFCTCFNEA-DVVGISDIFAAGEDPIPGASRDDL 415

Query: 419 PRSIHVHYSE------TMDGLFLFIQSSLVDGDVVV 448
            + +  H           D L   I++    GD+VV
Sbjct: 416 VKGLIAHGHRHAVAVPDEDALEALIRAEAKPGDIVV 451


>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
 gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
          Length = 514

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 27/147 (18%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIG 79
           VP   ++ + +DSR +A  + F A+ G   DG  +I  A+ +GA  V+         SI 
Sbjct: 22  VPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQGQSAPSIP 81

Query: 80  SLS---------------IPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVG 118
           +                 +P+  ++ +   L+KLA        ARL+    ++ +TG+ G
Sbjct: 82  TQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQFYHQPGARLK----LVGVTGTNG 137

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN 145
           KTT  ++L     ++    A +G+  N
Sbjct: 138 KTTLTQLLAQWSQALGNISAVMGTLGN 164


>gi|302339378|ref|YP_003804584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636563|gb|ADK81990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 459

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 25/173 (14%)

Query: 98  LAVAARLRSKATI---------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           L  AAR+ S  +I         IA+TGS GK+T   +++    +I+  Y       N   
Sbjct: 91  LKAAARVESDISIFLRHNNRPIIAVTGSKGKST---VVSAMFHAIQLRYPEARLGGNITV 147

Query: 149 VPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            PLT        +  PV     I EL    L ++R    L++P +++IT I   H +++ 
Sbjct: 148 SPLTFIDECRAESAAPV-----ILELSSWQLADLRG-KRLLKPAVSLITNIMHDHQNSYD 201

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            +E   + K  I+    K     +N DD +     +++ A  I      G ++
Sbjct: 202 SMEAYVADKKIIYADQTKEAYTVINGDDPWSAEFASETPAKSIPFFRDEGSAR 254


>gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 485

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 126/322 (39%), Gaps = 31/322 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+++DSR++ P + FFA+ G   DG  F+  AV  GA  V          G LS+P  
Sbjct: 22  IGGLAVDSRAVKPGDLFFALAGAKTDGARFVAAAVAAGAVAVAGEH---RPEGDLSVPFV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + +   AL + A     R    I A+TG+ GKT+           +    A IG+    
Sbjct: 79  QLSNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHAAASIGT---- 134

Query: 147 IGVPLTLARM---------PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187
           IG+ +T  R          P+ +   + E+   G++HL       G  +F    VR    
Sbjct: 135 IGL-VTPTRSVYGSLTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVAAG 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---TIFLNYDDSFFELLKAKSHALGI 244
             T ++  H+     +    +AK  +F  L + G    I  ++D S   +  A +  L +
Sbjct: 194 GFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLRL 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            TI   G    A  +L           + V+  GK   +    +G    +N L+  G+V 
Sbjct: 254 ITIGRNG-DPGAGIKLIDAAVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGR 326
               D   +  AL       GR
Sbjct: 313 GTGGDAAASFAALEHLEGAPGR 334


>gi|295094465|emb|CBK83556.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus sp. ART55/1]
          Length = 460

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKTTT  ML+  L             +  I V   L  +  ++  G  E  ++
Sbjct: 114 IAVSGTHGKTTTTSMLSYILID--------ADTDPTISVGGILDSIGGNIRVGKSEYFVT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H  +P I++I  +   HL  F  I+EIA +         K G + +N D  
Sbjct: 166 EACEYTNSYHAFKPFISIILNVDADHLDFFKDIDEIAESFHVFATKTPKEGLVIVNGDMK 225

Query: 231 FFE 233
           +++
Sbjct: 226 YYD 228


>gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
 gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
          Length = 599

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I  H  G  P   V G+S+DSR + P + + A+  P    H     A    AG V V TD
Sbjct: 56  IAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAV--PGAHAHGAAFAATALEAGAVGVLTD 113

Query: 74  -----MVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTT 122
                ++A  G    PV  VD V  A     VAAR+      +   ++ +TG+ GKTTT
Sbjct: 114 AAGRALLAGQGLADAPVLEVDAVRTAAGT--VAARVYGGGRDAGPRLVGVTGTNGKTTT 170


>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGLNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAECNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDYKMQNYIDAKFRI 201

Query: 214 FEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            +   +    +F N D     +++ + H  GI   Y
Sbjct: 202 IQNQTDNDAFVFWNDD----PIIREELHKYGIHGQY 233


>gi|254880788|ref|ZP_05253498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
 gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGMNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAECNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
            +            DD    +++ + H  GI    Y F + K
Sbjct: 202 IQNQTPDDAFIFWNDDP---IIQRELHKYGIHGHYYPFAERK 240


>gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
 gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
          Length = 495

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           +++DSR  A  + F A+KG   DG  +I  A+ +G   ++      A  G +     +PV
Sbjct: 25  MTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAIIAEAQGEAEEGEIRVVHGVPV 84

Query: 86  FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             + D+   L+ LA     +  SK  ++ +TG+ GKTTT +++      + +T A +G+ 
Sbjct: 85  IYLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTV 144

Query: 144 NN----HIGVPLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHLVRPHIAVI 189
            N    H+          VD+   + +L           +S  G I+     +    AV 
Sbjct: 145 GNGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLIQGRVAALNFDAAVF 204

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           T ++  HL     +E   +AK  +F    +T T  +N DD
Sbjct: 205 TNLSRDHLDYHGDMENYEAAKWLLFS-THQTKTQIINADD 243


>gi|193215589|ref|YP_001996788.1| Mur ligase middle domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089066|gb|ACF14341.1| Mur ligase middle domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 503

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 117/308 (37%), Gaps = 31/308 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV 158
           V   L  K T I ++G+ GKTTT  +L   L   K ++   IG  + + G    L   P 
Sbjct: 128 VGHELIKKNTSIVVSGTHGKTTTTSILAWLLDFAKLESGFLIGGIHANFG----LGCRPS 183

Query: 159 DVDFGIF-----ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             + G+F     E   +   +     H  RP IAVI  I   H   F+ + +I  + A  
Sbjct: 184 GRENGVFVTEGDEYDSAFFDKRSKFLHY-RPDIAVINNIEFDHADIFASLADIELSFARF 242

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LRKWKQCSEQS 270
              + + G +    +    E L  K  A       SFG   +A++Q   +      +E S
Sbjct: 243 VNLIPRNGALLYASNSLRAEKLSKKCFA----KTESFGLEAHANWQAVEIDYRSDVTEFS 298

Query: 271 WMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH-PKEGRGK 328
            ++ Q L GK    +    G H  +N+L             +     L  F  PK    +
Sbjct: 299 ILKNQTLLGKLRSPL---FGEHNVRNVLAATAAAMHAGVRFEQIQAGLLAFQSPK----R 351

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R    L     TLID+ +  +P +++  +  + Q  P   GRRI    +          F
Sbjct: 352 RLEILLQNDRATLIDD-FAHHPTAIRETLKAVGQRFP---GRRIVACFEPRSNTTTRNFF 407

Query: 389 HIDLAEVL 396
             +L+E  
Sbjct: 408 QKELSECF 415


>gi|168206854|ref|ZP_02632859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
 gi|170661761|gb|EDT14444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
          Length = 458

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           K  +  +TGS GKTTT  +++  LS    KT+        +IG PL      + + D  +
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWT-----GGNIGTPLFSNIEEIKEEDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T  V   +A++T I P HL     ++E   AK  +F+   +   + 
Sbjct: 171 LELSSFQL-----MTMDVEIDVAIVTNITPNHLDMHKDMQEYIYAKKNVFKYQRENDLLV 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           +N ++   + L  ++    ++  +S  K+K  D
Sbjct: 226 INDENEITKNLDKEAKGKVVR--FSSKKTKGED 256


>gi|254291802|ref|ZP_04962587.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
 gi|150422314|gb|EDN14276.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
          Length = 506

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 57/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163
           IA+ G+ GKTTT  ++T   S   +  T+   G       N  +G    L     + D  
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
              L               +P + ++T I   H+  + G  E +     +    L   G 
Sbjct: 205 FLHL---------------QPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQ 249

Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
             L  DD    EL+   S     + + ++G S++AD ++  ++Q  +Q    V  +GK+ 
Sbjct: 250 AILCIDDPVIRELIPRVS-----RQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKAN 304

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCAL 334
           + +  +  G H   N L     +++ T D   D AI  L      +G G+R+        
Sbjct: 305 LNITLNIPGRH---NALNAAAAIAVATEDDIRDEAI--LRAMANTQGTGRRFDHLGEFET 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+D+ Y  +P  +   I      + +G   +  V+         ++  + D A 
Sbjct: 360 GNGVAMLVDD-YGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDLYDDFAN 414

Query: 395 VLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           VL   ++     V+ +G   +A  D       +     +D +F+         + + L D
Sbjct: 415 VLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 444 GDVVVVKSSNSCG 456
           GD+V+ + +   G
Sbjct: 475 GDLVLTQGAGDVG 487


>gi|82703611|ref|YP_413177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
 gi|122063250|sp|Q2Y636|MURD_NITMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82411676|gb|ABB75785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
          Length = 473

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 23/156 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           ++ ITGS GKTT   M    L          G    +IG P  L  +    D G      
Sbjct: 115 LVGITGSNGKTTVTAMTGAMLKKAGWDVEVAG----NIG-PAVLDALMRREDTGKMPQAW 169

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L   + L        A +  ++  HL  ++G++E A+AKA IF G +  G  
Sbjct: 170 VLELSSFQLETTKSLGL----DAAAVLNVSEDHLDRYAGMQEYAAAKARIFLG-DSEGVQ 224

Query: 224 FLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNAD 257
            LN DD       L  + H       +S    ++AD
Sbjct: 225 ILNGDDPVVRQMTLAGRPH-----VTFSLATPQSAD 255


>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
 gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGMNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAECNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
            +            DD    +++ + H  GI    Y F + K
Sbjct: 202 IQNQTPDDAFIFWNDDP---IIQRELHKYGIHGHYYPFAERK 240


>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
          ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
          ligase [Yersinia frederiksenii ATCC 33641]
          Length = 471

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
          +++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D VA   S++    +PV
Sbjct: 1  MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPV 60

Query: 86 FGVDDVLGALNKLA 99
            + ++   L+KLA
Sbjct: 61 IYLRNLNQHLSKLA 74


>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 452

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 29/159 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  I ITGS GKTTT  ++   L       A +G    ++G  L +     D ++ + 
Sbjct: 108 TKAKTICITGSNGKTTTATLIYYILKYAGFDVALVG----NVGKSLAMQVAEKDCNYYVI 163

Query: 166 EL------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
           EL      GM H           +  IAV+  I   HL  +   I+   ++K  I +   
Sbjct: 164 ELSSFQLDGMYHF----------KADIAVLLNITSDHLDCYEYEIQNYINSKMRIIQNQT 213

Query: 219 KTGTIFLNYDDSFF---ELLKAKSHALGIKTIYSFGKSK 254
           K   IF+ + D      E+ K K       T Y F + K
Sbjct: 214 KN-DIFIYWSDDLVIAREIQKMKPTV----TFYPFSEQK 247


>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
          27755]
 gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
          27755]
          Length = 488

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
          DSR + P   F  I G   DGH ++    ++GA  V+V  D+    G   I V
Sbjct: 29 DSRKVVPGSVFVCISGAVSDGHQYVKDVAERGAAAVIVEKDVEVPEGLTVIKV 81


>gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
 gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
          Length = 481

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR  A +++ F +KG  +   +F++ A+ +G G  V   D       + IP   V 
Sbjct: 38  ICYDSRK-AKEKSLFFVKGAAFK-KEFLISAISQGLGWYVAEEDY-----EVGIPAIIVS 90

Query: 90  DVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           D+  A++ +A+      + K  ++A TG+ GKTT
Sbjct: 91  DIKKAMSLVAMEFYGNPQEKLKLLAFTGTKGKTT 124


>gi|86749115|ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris HaA2]
 gi|118595683|sp|Q2IYL0|MURD_RHOP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86572143|gb|ABD06700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris HaA2]
          Length = 466

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 90  DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +V+G +       RL +  A  +AITG+ GK+TT    T  ++ + +          +IG
Sbjct: 95  EVIGDVELFCRERRLHAPNAPFVAITGTNGKSTT----TALIAHLMRQAGYDTQMGGNIG 150

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             +     P      + E+    +     LT  + P + ++  +   H+     IE  A+
Sbjct: 151 TAILSLEPPRAGRVHVIEMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGTIEHYAA 206

Query: 209 AKAEIFEGLEKTGTIFLNYDDSF 231
            K  +  G++  GT  +  DD F
Sbjct: 207 VKERLVAGVQDGGTAIIGVDDGF 229


>gi|283782589|ref|YP_003373343.1| Mur ligase middle domain protein [Gardnerella vaginalis 409-05]
 gi|298253250|ref|ZP_06977042.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
 gi|283442106|gb|ADB14572.1| Mur ligase middle domain protein [Gardnerella vaginalis 409-05]
 gi|297532645|gb|EFH71531.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
          Length = 472

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR-MP-----VDVDF 162
           I+ I+G+ GKTTT  M+T  L       +      N   GV  +LA+ MP     ++ D 
Sbjct: 70  IVLISGTNGKTTTTRMVTSMLRDAGLNVFTNPTGSNFTRGVVASLAKIMPAFGTKLNADI 129

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL  ++   + F+   ++P  +++  +    L  F  I+  A   + +    E  GT
Sbjct: 130 AVLELDEAY--AVHFVNQ-IKPRYSLLLNVMRDQLDRFGEIDTTAKLLSNVAAATE--GT 184

Query: 223 IFLNYDDS 230
           + LN +DS
Sbjct: 185 VVLNREDS 192


>gi|240168216|ref|ZP_04746875.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium kansasii ATCC
           12478]
          Length = 488

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 118/293 (40%), Gaps = 31/293 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSY-----NNHI 147
           L +  V A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H 
Sbjct: 102 LLRPVVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGRDPSFAVGGELGEAGTNAHH 161

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G          + D  + E                 P +AV+T I   HL  +   E   
Sbjct: 162 GSGDCFVAEADESDGSLLEY---------------TPDVAVVTNIESDHLDFYGSTEAYV 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADF--QLRKWK 264
                  E L   G + +  DD     L  +S  LGI+ + Y   + + A     L  W+
Sbjct: 207 GVFDSFVERLAPGGALVVCTDDPGAAELARRSAELGIRVLRYGSAEPEGAPLAATLLSWE 266

Query: 265 QCSEQSWMEVQLQG-KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           Q   ++   ++L G +   V+   + G HMA N L  L     + A +D  +  L+ F  
Sbjct: 267 QRGTEAVAHLRLAGERHPRVMRLAVPGRHMALNALGALLAAIEVDAAIDEVLDGLAGF-- 324

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+      G   + D+ Y  +P  + A ++ +  +  HG   R+ V+
Sbjct: 325 -EGVRRRFELVGAVGSVRVFDD-YAHHPTEIGATLAAVRSVLQHGGTGRLLVV 375


>gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia J2315]
 gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Burkholderia cenocepacia J2315]
          Length = 512

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 117/294 (39%), Gaps = 40/294 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + +TG+ GKT+  + +  AL+++ +  A IG+     G+P  L  +P             
Sbjct: 113 VGVTGTNGKTSCTQWIATALTALHQPCAVIGTLGT--GMPGQL--VPTGFTTPDAPQLQR 168

Query: 171 HLGEIR-----FLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAE 212
            L ++R      +   V  H             IAV T +   HL      +   +AKA+
Sbjct: 169 SLAQLRAAGAQAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAK 228

Query: 213 IF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGK--SKNADFQLRKWKQCS 267
           +F   GL       LN DD+    L  K  A  ++TI Y  G   + +AD +L      +
Sbjct: 229 LFAWRGLRAA---VLNRDDAAGRRLLEKL-AGRVRTIAYGIGDAPAPDADRELVALDVRA 284

Query: 268 EQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPK 323
             +    +L+      +V    +G     N+L  LG  S+L ADV  D A+  +      
Sbjct: 285 TATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLG--SLLAADVPFDAALAEIERLESV 342

Query: 324 EGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            GR +R    L N     +ID  Y   P ++   +  L  I+    GR + + G
Sbjct: 343 NGRMQRLGGRLQNDEPLVVID--YAHTPDALDKTLDALRPIAAARGGRLVCMFG 394


>gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 477

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLIAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGAGQWLVV 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   HL N+ +    I  A  E  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCL 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + ++G    AD +     Q   +    + L +GK + V   
Sbjct: 228 DDPEVAELVGKAR----RHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N L    +   L    +   +AL  F    G G+R+      A+  G    +
Sbjct: 284 LPGRHNVLNALAASAVGWQLGVPPEVIGRALKSF---VGIGRRFNDLGDVAIGNGACVRL 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 IDDYGHHPRELEA 353


>gi|296111923|ref|YP_003622305.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc kimchii IMSNU
           11154]
 gi|295833455|gb|ADG41336.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc kimchii IMSNU
           11154]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 31/266 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T IA+ G+ GKT+T  +L   L +I  T   IG      GVP +         F + 
Sbjct: 102 EQTTAIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGR-GVPSS--------QFFVV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   +  I+++  A ++    ++K   IF 
Sbjct: 153 E-----ADEYRRHFKDYVPDYAILTNIDFDHPDYYQDIQDVTHAFSDFASHVKK--AIFA 205

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             DD     L  K+       +Y +G  S   DF      + +E S   V  +G+++ E 
Sbjct: 206 WGDDEHLRALHPKA------DVYYYGTNSDKDDFVATNIHKSTEGSHFTVVFRGETLGEF 259

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342
                G H   N L  + +  +   ++    + L  +     +G + R +  Q    T+I
Sbjct: 260 SVPLFGQHSILNALAVIAVAYMEKVNLTLIRQYLMTY-----QGVKRRFSEKQIADITVI 314

Query: 343 DESYNANPASMKAAISVLSQISPHGE 368
           D+ Y  +P  + A +    Q  P+ +
Sbjct: 315 DD-YAHHPTEIDATLDAARQKYPNKQ 339


>gi|255326226|ref|ZP_05367312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296680|gb|EET76011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 528

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + +TG+ GKTTT  M+   L +  K    +G    ++G+P+  A +  D  +  F + +S
Sbjct: 161 LCLTGTNGKTTTVGMVDSVLKAAGKKSIQVG----NVGMPIVYA-IADDEPYEFFAVELS 215

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              ++ + TH + P+ +V+  IA  H+      E   + KA ++E
Sbjct: 216 SF-QLHW-THSMSPYASVVLNIAEDHVDWHGSFERYKADKARVYE 258


>gi|295089862|emb|CBK75969.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 465

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 145/359 (40%), Gaps = 35/359 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +R+    IA++G+ GKTTT  ML+ I L++       +G     IG  + +       +F
Sbjct: 113 MRNYREAIAVSGTHGKTTTTSMLSEIFLAAEADPTISVGGILPSIGGNIRVG----GPEF 168

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E        + F      P I VI  I   H+  F  + +I S+     +   K G 
Sbjct: 169 FITEACEYTNSFLEFF-----PTIEVILNIEEDHMDFFKDLADIRSSFTRFAKKTPKQGA 223

Query: 223 IFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280
           + +N + + + E++K          + +FG  +  D+   +    S  +   +  ++G+ 
Sbjct: 224 VVINGEIEDWQEIVKNTE-----GRVITFGTDRGFDYSAGEISYDSLARPTFDFYIRGEK 278

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + +  G+ G H   N L            ++   + L  F   + R ++ +  LN    
Sbjct: 279 QDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFEK-KGVLNG--V 335

Query: 340 TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           T+ID+ Y  +P  ++A++                PH   R  A L +  E   LS +  I
Sbjct: 336 TIIDD-YAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAEA--LSMADCI 392

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            LA++ +      + +S   +    + L +   V Y  T + +  F++ S + GD+++ 
Sbjct: 393 VLADIYAARETDTLGISSRDIAEKIERLGKK--VWYFHTFEEIEEFLKKSCIHGDLLIT 449


>gi|256825476|ref|YP_003149436.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
 gi|256688869|gb|ACV06671.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
          Length = 518

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGV 149
           VL     LA+A + R +   I + G+ GKT+T  M+  AL +  +     IG+     G 
Sbjct: 120 VLHQAQALALATQGRRR---IVVAGANGKTSTSAMVAWALRAAGRDCGYAIGAELVGRGR 176

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              +   P  V  G    G        F+T+  RP +AV+T + P HL  +   E +  A
Sbjct: 177 NAEVGTAPEFVIEGDESDGS-------FVTY--RPEVAVLTNVRPDHLDLYGSFETVQRA 227

Query: 210 KAEIFEGLEKTGTIFLNYDD 229
             E    + + G +    DD
Sbjct: 228 YDEFLATIPRGGVLIACSDD 247


>gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
 gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
          Length = 504

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 152/408 (37%), Gaps = 98/408 (24%)

Query: 23  PQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGS 80
           P G  V+GIS+ S+ I P + + A+ G    G +F   A+  GA  V V TD   A  G 
Sbjct: 31  PAGLEVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGA--VAVFTDEAGADRGP 88

Query: 81  LSIPVFGVDDVLGALNKLA----------------------------VAARLRSKATIIA 112
              P   VD     L +L+                            + A L+      A
Sbjct: 89  AGAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVPAA 148

Query: 113 ITGSVGKTTTKEMLTIALSSI--------------KKTYACIGSYNNHIGVPLTLARMPV 158
           + G+VG     E +  +L++               +   AC    ++H    L + R   
Sbjct: 149 VVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHA---LVMGR--- 202

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VD  +F+                   +AV   +   HL     +E+  +AKA +F   E
Sbjct: 203 -VDGVVFD-------------------VAVFLNLGRDHLDFHRDLEDYYAAKASLFT-PE 241

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     +N DD+    L A+   + ++T +S G+  +A  Q   W+       ++V+L+ 
Sbjct: 242 RARFALVNVDDAHGRRL-AEEATVPVRT-FSMGRGDDA--QRADWRA------VDVRLRA 291

Query: 279 KSME-VVHHGIGYHMAQNMLMT---------LGIVSILTADVDTAIKALSVFHPKEGRGK 328
              E VV    G  +     +            + +   A +D A+ A  +       G+
Sbjct: 292 TGSEFVVVAPDGRRIPAGCALPGDFNVANTLAAVAAAAEAGLDPAVVAAGIAAAGGVPGR 351

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             R    Q F  ++D  Y   P +++AAI  L  ++   EGR I VLG
Sbjct: 352 LERVDAGQDFLVVVD--YAHKPDAVEAAIRTLRPLT---EGRVIVVLG 394


>gi|238791171|ref|ZP_04634810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
 gi|238729304|gb|EEQ20819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
          Length = 438

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 184/458 (40%), Gaps = 65/458 (14%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +  +V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFMARGVTPRVMDTRINPP---GLDKLPESVERHVGDLNQQ 61

Query: 69  -VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKE 124
            +++ D++ +   +++    ++D   A  ++     L    ++A ++AITGS GK+T   
Sbjct: 62  WLLDADLIVASPGIALAHPALNDAAEAGVEIVGDIELFCRENQAPVVAITGSNGKST--- 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +T  +  + K          +IGVP LTL R   +    + EL    L      T  + 
Sbjct: 119 -VTTLVGEMAKAAGWQVGVGGNIGVPALTLLRQ--ENQLVVLELSSFQLE----TTSSLH 171

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHA 241
              A I  +   H   +  G+++  +AK  ++E  +      +N DD+    +  A S  
Sbjct: 172 ASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAK---VCVVNADDALTMPVRGADSRC 228

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNML 297
           +      SFG     D+ L K +    + W+ V+    L  + M++     G H   N L
Sbjct: 229 I------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLT----GRHNYTNAL 274

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +   +     +++KAL+ F    G   R++          I++S   N  S +AA+
Sbjct: 275 AALALADAVGIPRSSSLKALTTF---TGLSHRFQLVFEHNGVRWINDSKATNVGSTEAAL 331

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             + Q+    EG    +LG              D + +       H+ +  F     + A
Sbjct: 332 DGI-QV----EGTLHLLLG--------GDGKSADFSGLTRFLQGDHIKVYCFGRDGEQLA 378

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             R      +ETM+   + +  SL  GD+V++  S +C
Sbjct: 379 ELRPEVSQLTETMEQAMVLLAKSLAPGDMVLL--SPAC 414


>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
 gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
          Length = 492

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 23/226 (10%)

Query: 81  LSIPV--FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTY 137
           LS P+  + +D  +  +++L  AA    KA  I A+TG+ GK+T    +T     I +  
Sbjct: 97  LSEPILAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKST----VTTFTGQILQQA 152

Query: 138 ACIGSYNNHIGVPLTLAR-----MPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   ++G P + A       P D       + E+    L     L     P + VI
Sbjct: 153 GVRTFVGGNLGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLE----LPGSFSPSVGVI 208

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++P HL     +E     K  +FE ++ +    + + D F   +  K ++   K    
Sbjct: 209 LNLSPDHLERHKSMENYGETKCRLFERMDSSKLSIIPHGDEFLRKVAYKYNSGSTKAWLG 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  D Q R+       +  E +L    ++ V    G H AQN
Sbjct: 269 ALPGVQLDNQARRAVVVVPTTKAEARLYLSGLKAV----GSHNAQN 310


>gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
 gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
          Length = 476

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 11/131 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-----GS 80
            V G++ DSR +AP + + A+ G H  G DF   A+ +GA  V+ + +    I      +
Sbjct: 1   MVRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPA 60

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKT 136
            ++PV    D    L    VAAR+    +    ++ +TG+ GKTTT  +L   L +   T
Sbjct: 61  AALPVLVSADPRRDLAP--VAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHT 118

Query: 137 YACIGSYNNHI 147
              IG+    I
Sbjct: 119 TGLIGTVETRI 129


>gi|15678558|ref|NP_275673.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621604|gb|AAB85036.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 682

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 100/266 (37%), Gaps = 60/266 (22%)

Query: 149 VPLTLARMPVDVDFGIFELG-MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           VP   AR+P DV   + E+G     GEIR    L    + VIT I+  HLS      +  
Sbjct: 339 VPALQARLPGDV--AVVEIGTFGRRGEIRSSAMLSGVSVGVITNISRDHLSAGRRFSDYI 396

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIKTIYSFGKSKNADFQLRK 262
             K E+ E  E    + LN DD         L + +    GI++  S G         R+
Sbjct: 397 ECKGEMVEVAED---LVLNADDPIVASLADGLPRERVVFYGIQSSESGGVVPEG----RE 449

Query: 263 WKQCSEQ------------------SWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTL 300
             +C +                    ++  Q    ++E    G    IG  M +  L T 
Sbjct: 450 CPKCGKPLRYTRRTIGHLGDYQCICGYLRPQPDVMAIEASPGGFKLVIGQEMREVRLATP 509

Query: 301 GIVSI------------LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           GI ++            +  ++D  ++ L  F    GR +     L++    ++D  Y  
Sbjct: 510 GIFNVYNALAAAATAWTMGLEIDDIVRGLESFKGVPGRFQE----LSESPRIILD--YAH 563

Query: 349 NPASMKAAISVLSQISPHGEGRRIAV 374
           NPA ++A +  L      G+GR I V
Sbjct: 564 NPAGVRAVMQDL-----RGKGRLIVV 584


>gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
 gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
          Length = 495

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 24/215 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P   + G+++D+R I P + F A++G   D   FI  A++ GA  V+ +   +     +
Sbjct: 17  IPDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPAAIEAGAAAVIADDGDIHGQFDV 76

Query: 82  S----IPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSI 133
           +    +PV     +   L+   +A R         T+I +TG+ GKTT  +++   +  +
Sbjct: 77  TMQGGVPVVAFPHLKSTLSD--IAGRFYQSPSQGMTVIGVTGTNGKTTVSQLVAQWIDLL 134

Query: 134 KKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF-ELGMSHL-------GEIRFLT 179
               A +G+  N         +  T + + +      F + G +H+       G ++   
Sbjct: 135 GGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQQGATHVAMEVSSHGLVQDRV 194

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             V    A+ T ++  HL     +E  A AK  +F
Sbjct: 195 KAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLF 229


>gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 464

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           +IA+TGS GK+TT  ++   L+   +     G+          + R  +D+D G      
Sbjct: 122 VIAVTGSNGKSTTAALIHHILTEAGREAQLAGN----------IGRGVLDIDPGGDGSVV 171

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           + EL        R LT    P +AV T ++P HL    G+    +AK  +F
Sbjct: 172 VLELSSYQTELARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218


>gi|218899066|ref|YP_002447477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228902418|ref|ZP_04066572.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
 gi|228966866|ref|ZP_04127910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226711880|sp|B7IUS2|MURD_BACC2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218545114|gb|ACK97508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228792965|gb|EEM40523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857162|gb|EEN01668.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
          Length = 450

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           SKA  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SKAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQDAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA +F+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  ++++  +   G K ++S  K 
Sbjct: 222 INADDA--DVMELSADTKGQKILFSTTKE 248


>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 492

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 148/376 (39%), Gaps = 47/376 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPV 85
           ++ I  DSR  AP   F  I G   D H+F      KG   +V+  D+ ++++  +++  
Sbjct: 23  ISDIIYDSRKAAPGLLFVCIVGTQRDSHEFAADCAAKGVSALVIQHDIDLSALPGVTVVK 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS--- 142
                   AL    +      K T+I +TG+ GKTTT  M+   L +  +    IG+   
Sbjct: 83  VESSRYAMALMSANLFGNPSRKMTMIGVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGI 142

Query: 143 --YNNHIGVPLTLAR-----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                H     T              +    D  + E+    L   R     V  ++ V 
Sbjct: 143 YYMGRHKETANTTPESYELQKTFREFLDAGCDTALMEVSSQGLMMDRVAG--VHYNVGVF 200

Query: 190 TTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           T ++P H+        EE  S K ++F   ++     +N DD   E L  + H   + T 
Sbjct: 201 TNLSPDHIGPGEHKTFEEYRSWKGQLF---KRCDVGVVNIDDENTEAL-LEGHTCKLIT- 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
             +G+++ AD++   ++      ++ V+    GK  M+V  +  G     N L  L +  
Sbjct: 256 --YGRAEQADYRETGFELLRTHDFLGVKFHVTGKDEMDVKVNMPGEFSVYNALAALAVGK 313

Query: 305 ILTADVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           +L    D AI      H   G    +G+     +++ F  L+D  Y  N  S ++ ++ L
Sbjct: 314 VLGLP-DQAI------HDGLGKCVVKGRVELVPISKKFTILLD--YAHNEVSTESLLTTL 364

Query: 361 SQISPHGEGRRIAVLG 376
               PH   R + V G
Sbjct: 365 RAYKPH---RLVVVFG 377


>gi|228909738|ref|ZP_04073561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
 gi|228850027|gb|EEM94858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
          Length = 450

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           SKA  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SKAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQDAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA +F+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+  ++++  +   G K ++S  K 
Sbjct: 222 INADDA--DVMELSADTKGQKILFSTTKE 248


>gi|254458198|ref|ZP_05071624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacterales
           bacterium GD 1]
 gi|207085034|gb|EDZ62320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacterales
           bacterium GD 1]
          Length = 400

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I I+G+ GKTTT +M+   L S K + A       +IG PL  A + +D    I E    
Sbjct: 90  IWISGTNGKTTTTQMMQHLLES-KGSQA-----GGNIGTPL--AELSLDAKMWILETSSF 141

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +      T++  P+I V+  ++P HLS    ++E   AK
Sbjct: 142 TM----HYTNIATPNIYVLLPLSPDHLSWHGSMQEYVDAK 177


>gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa
           Temecula1]
 gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23]
 gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1]
 gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23]
 gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 477

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 25/253 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ++   LS   +  T+         IG  L  A     +  G + + 
Sbjct: 118 IAVAGTHGKTTTTSLIAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGAGQWLVV 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P +AV+T I   HL N+ +    I  A  E  + L   G   L  
Sbjct: 170 EADESDGSFLR--LNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCL 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD     L  K+     + + ++G    AD +     Q   +    + L +GK + V   
Sbjct: 228 DDPEVAELVGKAR----RHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVTLA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N L    +   L    +   +AL  F    G G+R+      A+  G    +
Sbjct: 284 LPGRHNVLNALAASAVGWQLGVPPEVIGRALKSF---VGIGRRFNDLGDVAIGNGACVRL 340

Query: 343 DESYNANPASMKA 355
            + Y  +P  ++A
Sbjct: 341 IDDYGHHPRELEA 353


>gi|332872846|ref|ZP_08440811.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
 gi|332739007|gb|EGJ69869.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
          Length = 482

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 154/366 (42%), Gaps = 42/366 (11%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L     +  F + E  
Sbjct: 125 IAVAGAHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEAD 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 180 ES---DASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   +S   V  +G+  + +  +
Sbjct: 235 DDANIREILPR---VG-RPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTIN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L  +G+ +      +   +AL  F    G G+R++      L +G   L+
Sbjct: 291 QPGLHNVLNALAAIGVATDEGVSDEAISRALKGF---SGVGRRFQVQGEFELGEGNVKLV 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
           D+ Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS  +  
Sbjct: 348 DD-YGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLSQVDQL 402

Query: 401 -ISHVWLSGFHVLALKDA--LPRSIHVHYS------ETMDG-LFLFIQSSLVDGDVVVVK 450
            +  V+ +G   +   D+  L RSI +         + ++G L   +QS L   D+++ +
Sbjct: 403 LLLEVYPAGEKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQSVLQPNDLLLTQ 462

Query: 451 SSNSCG 456
            + + G
Sbjct: 463 GAGNVG 468


>gi|320334318|ref|YP_004171029.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319755607|gb|ADV67364.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 937

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 14/156 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLARM 156
           +  II+ITG+ GK+TT  M+   +    K      S   ++            P +   +
Sbjct: 522 RMPIISITGTNGKSTTSRMVAHIMRHAGKVVGLTTSNGIYVNGELIMTGDTTGPKSAKVI 581

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIF 214
             D +  +  L  +  G +R      R  +  +  I P HL       +E++A  K  + 
Sbjct: 582 LSDPNVEVAVLETARGGILREGLAFDRADVGAVLNIQPDHLGVKGIKTVEDLAWVKGLVV 641

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           E +  TGT  LN DD     ++AK  A G  T +S 
Sbjct: 642 EVVTDTGTSVLNADDPLTLAMRAK--AKGRVTFFSM 675


>gi|308271441|emb|CBX28049.1| UDP-N-acetylmuramate--L-alanine ligase [uncultured Desulfobacterium
           sp.]
          Length = 459

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 122/308 (39%), Gaps = 34/308 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128
           N ++VA+   +S+PV    ++L  L +L  +         IA+ G+ GKTTT  ++   +
Sbjct: 78  NPEVVAA-AQVSVPVIPRAEMLAELMRLKYS---------IAVAGAHGKTTTTSIVASVL 127

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           A   +  T   IG     I     L +       G + +  +   +  FL +   P IAV
Sbjct: 128 AKGGLDPT-VVIGGKLKSIDSNALLGQ-------GNYIVAEADESDGSFLKY--SPAIAV 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I   HL  +S I+ I        + +   G   L  D+ + + +  K      K   
Sbjct: 178 VTNIDKEHLDFYSNIDAIKDVFLNFIDRIPFYGLAVLCLDNEYVQDIIPKIK----KRFT 233

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILT 307
           ++G S  A FQ +        S  +V   G ++ E+  +  G H   N L ++ +   L 
Sbjct: 234 TYGMSSQAVFQAKNVSIEGLISKFKVCYNGNTLGEISLNLPGIHNVYNSLASIAVGMELD 293

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D   +AL      +G  +R          T++D+ Y  +P  ++  +       P  
Sbjct: 294 IPFDIIKEALENM---QGVQRRLEIKGEVRGITVVDD-YGHHPTEIRTTLQAAKDCWPD- 348

Query: 368 EGRRIAVL 375
             RR+ V+
Sbjct: 349 --RRVIVV 354


>gi|149914528|ref|ZP_01903058.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811321|gb|EDM71156.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 477

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 32/280 (11%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++   E +     E    +   G      DD   + L AK   L  +
Sbjct: 192 IAIVTNIDPEHMDHWGTEENLHRGFYEFVSNIPFYGLAVCCTDDPDVQALVAK---LTDR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + ++G +  AD +    +     +  +V LQ +   +    +   G H   N L  + +
Sbjct: 249 RVVTYGFNTQADIRAVNLRYEKGVAHFDVALQAEGTMIEGCTLPMPGDHNVSNALSAVAV 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L        +AL+ F    G  +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 309 ARHLGMKRSEIREALAAFG---GVNRRFTKVGEVNGVTIIDD-YGHHPTEIAAVLKAARQ 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN------ISHVWLSGFHVL--AL 414
                +GR IAV              H   AE  + +N      I+ V+ +G   +  A 
Sbjct: 365 AC---DGRVIAV-----HQPHRYSRLHHHFAEFCTCFNEADVVAIAEVFAAGEDPIDGAT 416

Query: 415 KD----ALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVV 448
           +D     L R+ H H      +D L   ++     GD+VV
Sbjct: 417 RDDLVAGLIRAGHRHARAFNDLDDLVRLVREQARPGDMVV 456


>gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Rv]
 gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis
           AF2122/97]
 gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           F11]
 gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
 gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           EAS054]
 gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T85]
 gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           210]
 gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN R506]
 gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis
           AF2122/97]
 gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Ra]
 gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis F11]
 gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis W-148]
 gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 494

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 104 RPAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 163 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 209 FDSFVERIVPGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 268

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 269 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 326

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 327 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 381


>gi|320450519|ref|YP_004202615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
 gi|320150688|gb|ADW22066.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
          Length = 417

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  +A RL S A II ITG+ GKT+T    T+  + + +          ++  PL   
Sbjct: 82  LGEAELAYRL-SPAPIIGITGTAGKTST----TLFTAHLLRGQGLKALEGGNVDPPLVSV 136

Query: 155 RMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              VD  +  + EL    L  I    H+ RP +AV+  +   HL     +E    AK  +
Sbjct: 137 ---VDEAEVAVAELSSFQLERI----HVFRPRVAVLLNLGVDHLDRHGSVEAYHQAKLNL 189

Query: 214 FEGLEKTGTIFLNYDDS 230
            + L     +  N  D 
Sbjct: 190 LKNLTPEDALVYNEGDP 206


>gi|163814710|ref|ZP_02206099.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
 gi|158450345|gb|EDP27340.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
          Length = 460

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKTTT  ML+  L             +  I V   L  +  ++  G  E  ++
Sbjct: 114 IAVSGTHGKTTTTSMLSYILID--------ADTDPTISVGGILDSIGGNIRVGKSEYFVT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H  +P I++I  +   HL  F  I+EIA +         K G + +N D  
Sbjct: 166 EACEYTNSYHAFKPFISIILNVDADHLDFFKDIDEIAESFHVFATKTPKEGLVIVNGDME 225

Query: 231 FFE 233
           +++
Sbjct: 226 YYD 228


>gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
          ligase, murE [Flavobacteria bacterium BBFL7]
 gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
          ligase, murE [Flavobacteria bacterium BBFL7]
          Length = 488

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
          V  +  DSR+I   + F A+KG   DGH FI  AV  GA  V++
Sbjct: 24 VEQVQFDSRAIRKGDVFIALKGTAVDGHQFIEKAVASGAVAVLL 67


>gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 509

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 113/273 (41%), Gaps = 44/273 (16%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           D  Q I G  I        ++G+  DSR + P   F A++G   DG+ +I  A++ GA  
Sbjct: 2   DFFQLIDGAEILSCSGNAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAVA 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--------KATIIAITGSVGK 119
           +V ++       +  IP  GV   + A  + A+ +RL +        K  I  +TG+ GK
Sbjct: 62  IVTDS-------ATEIPRPGVAWAICAHGRRAL-SRLSANFYKHPAEKLAITGVTGTNGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLARMPVDVD------------F 162
           TTT  +L   L    +  A IG+   HI       P T    P++++             
Sbjct: 114 TTTTYILDSLLRHAGRKTAMIGTVEYHIADRVIPAPHTTPE-PLELNQIFREALNEGATE 172

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKT 220
            + E+    L + R     +   +AV T +   HL     +E    +KA +F+G   E  
Sbjct: 173 AVMEVSSHALAQERVFG--IPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPP 230

Query: 221 GTIFLNYDDSFFE--LLKAKSHALGIKTIYSFG 251
               +N DD + E  +  A  H      +Y++G
Sbjct: 231 RVGIINRDDEWAEKFMKVANKHC---DKVYTYG 260


>gi|27381712|ref|NP_773241.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium japonicum
           USDA 110]
 gi|44888203|sp|Q89FU8|MURC_BRAJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27354881|dbj|BAC51866.1| UDP-N-acetylmuramate-alanine ligase [Bradyrhizobium japonicum USDA
           110]
          Length = 467

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 23/210 (10%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++T + P HL +F   E +  A     E L   G   +  D    + L  K   +  +
Sbjct: 177 VAIVTNVDPEHLDHFKTFEAVQDAFRHFVENLPFYGFAVMCIDHPVVQSLVGK---IEDR 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GIGYHMAQNMLM 298
            I ++G++  AD +L         S  +V  + +    VH          G H A N   
Sbjct: 234 RIITYGENPQADVRLVDLTPMGGGSKFKVAFRDRKTGAVHEIPDLMLPMPGRHNASNATA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI- 357
            + +   L    +    A++ F    G  +R+         T+ID+ Y  +P  + A + 
Sbjct: 294 AIAVARELGVSDEAIRSAIAGFG---GVKRRFTKTGEWNGVTVIDD-YGHHPVEIAAVLK 349

Query: 358 --------SVLSQISPHGEGRRIAVLGDMC 379
                    +++ + PH   R  ++  + C
Sbjct: 350 AARESTNGKIVAVVQPHRYTRLQSLFEEFC 379


>gi|326800443|ref|YP_004318262.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326551207|gb|ADZ79592.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 453

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 147/371 (39%), Gaps = 44/371 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGI 164
           T + + GS GKTT   M+   L  + +++  +      +G  L    T+ ++  D    I
Sbjct: 104 TRVVVGGSHGKTTITSMIMHVLKELGRSFDYV------VGAKLEGFETMVKITKDAPLII 157

Query: 165 FELGMSHLGEI-----RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            E G  +L        +FL  L   +IA+I+ IA  H++ F   +E         E +E+
Sbjct: 158 IE-GDEYLASAIDRRPKFL--LYHANIALISGIAWDHINVFPTYQEYVEQFKLFIESIEE 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            GT+  N DD   + L + +++   K  Y     K  +F + K     + S  E+ LQ  
Sbjct: 215 KGTLVYNKDDKEVQNLVSNNNSNINKHGY-----KLPEFTINKGVSYLKTSKGEIALQ-- 267

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N+     +   L    +   +A+  F   +G  +R     +    
Sbjct: 268 -------IFGKHNLSNLAGAFTVCEWLGISREDFYQAIGSF---KGAARRLEYVADYA-G 316

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE--LSQSF----HIDLA 393
           +++ + +  +P+ ++A+I  + +  P+ +   I  L     + E  L + F      D A
Sbjct: 317 SVVYKDFAHSPSKVRASIDAVKEQYPNSKLVAIIELHTFSSLNEEFLQEYFDTMKQADEA 376

Query: 394 EVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            V    N      +     L +K A  R   +++++    L  +I      G  V+  SS
Sbjct: 377 VVFIDQNSFRQKNIKPIEALTIKKAFNRDDIIYFNDAQ-SLEAYISQLDPQGKNVLFMSS 435

Query: 453 NSCGFYRLINL 463
            + G   L+NL
Sbjct: 436 GNFGGINLVNL 446


>gi|304413641|ref|ZP_07395085.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Regiella insecticola LSR1]
 gi|304283732|gb|EFL92126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Regiella insecticola LSR1]
          Length = 509

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 22/194 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++  I+AITGS GK+T    +T  L  + +          +IG+P LTL +    +   +
Sbjct: 133 NQVPIVAITGSNGKST----VTTLLGEMARNAGWQVGVGGNIGIPALTLLKQKYQLI--V 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T+ ++  +A I  I+  H   +  G+E+  +AK  I+E      T 
Sbjct: 187 LELSSFQLE----TTYSLQAQVATILNISEDHSDRYPQGLEQYQAAKLRIYENAH---TC 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +N DD+  +  K  ++A  I T+        G+  +   QLR       Q     + +G
Sbjct: 240 VVNVDDALTK-PKQDTNAHYIPTVLQVAARRPGRETDERRQLRDSANARSQQRGSFEGEG 298

Query: 279 KSMEVVHHGIGYHM 292
            S   V  G  YH+
Sbjct: 299 YSSFGVDVG-DYHL 311


>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 555

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 101/288 (35%), Gaps = 54/288 (18%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ DSR + P + + A+ G    G DF   A + GA  V+ + D      +  +PV 
Sbjct: 44  VRGITHDSRQVGPGDLYAALPGTRAHGADFAGQAAEAGAAAVLTDGDGAERAAATGLPVI 103

Query: 87  GVDDVLGALNKLA----------------------------VAARLRSKATIIAITGSVG 118
            V DV   L   A                            V + LR       + G+V 
Sbjct: 104 VVPDVRAVLGTAASWVFKDPAQDLLLIGTTGTSGKTTVTYLVESGLRHAGMRTGLVGTVE 163

Query: 119 KTTTKEMLTIALSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
                E +  +L++ + T     +A +          ++ A M V        L +S +G
Sbjct: 164 MRVGDERVVSSLTTPEATDLHGLFALMRERG------VSAAAMEVSS----HALALSRVG 213

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             R+        +AV T ++  HL   S + +   AKA +F   E      +N DD F  
Sbjct: 214 GTRY-------DVAVFTNLSQDHLDFHSDLRDYFDAKARLFT-PEYCDIAVVNADDRFGR 265

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            L     A G   + +F      D          E  W  V ++  +M
Sbjct: 266 ALVDMVQADGRVPVTTFAVDGYTDAD---PATAMEADWRAVDVRLGAM 310


>gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 518

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 147/371 (39%), Gaps = 43/371 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-----IPVFG 87
           DSR       F  ++G   D H F+   + +G   +VV  +       L      I V  
Sbjct: 52  DSRKAGRGSVFVCMRGSTTDSHSFLQKVIAEGTEAIVVEEESSMLPVDLREIYEGIAVVR 111

Query: 88  VDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V     AL KL+ AAR      +  +IA+TG+ GKTTT  M+   L S  ++   IG+  
Sbjct: 112 VPSSREALAKLS-AARFGFPSREMRVIAVTGTKGKTTTAHMIRSILESAGESCGLIGTTG 170

Query: 145 -NHIGV--------PLT-----LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            ++ G+        P +     L R   D   G   +  S  G   + T  +     + T
Sbjct: 171 VDYAGIHEETKNTTPESYELQDLFRRMADRGCGYVVMEASSQGFKLYRTDAIDFDYGIFT 230

Query: 191 TIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            I P H+  +     EE    K+ IF    ++    +N D  + E L A +       +Y
Sbjct: 231 NIEPDHIGPNEHKDFEEYKYYKSRIF---RQSRVGLINRDSPYAEELIAGAKC----RMY 283

Query: 249 SFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSI 305
            FG  K+ADF     +  +   ++  E Q+ G + ++V  +  G +   N +  + + S+
Sbjct: 284 CFGIDKSADFMAEGIQAVNSPDFVGSEFQVIGMAKLDVRLNLPGKYNVYNAMAAISVCSL 343

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +       +KAL +       G+      N     ++D ++NA    M+  +  L +  P
Sbjct: 344 IGIRNSAILKALRLIRVN---GRMELAFKNDTMSVIVDYAHNA--MGMENLLETLREYHP 398

Query: 366 HGEGRRIAVLG 376
               R + V G
Sbjct: 399 K---RLVVVFG 406


>gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
          Length = 494

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 104 RPAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 163 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 209 FDSFVERIVPGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 268

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 269 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 326

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 327 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 381


>gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus deserti VCD115]
 gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Deinococcus deserti VCD115]
          Length = 493

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            HDL  A+   +  + P   V G++ ++  + P  AF AI+G  +DGH F L  V++   
Sbjct: 3   LHDLAAALNVPTTSL-PDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSF-LQQVREAGA 60

Query: 67  LVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           + V+   M   + S    L++P         A       +R      ++ +TG+ GKTTT
Sbjct: 61  VAVLGEGMPDGMNSPLPYLTVPSARAALADAAAALAGHPSR---ALKVVGVTGTDGKTTT 117


>gi|254456580|ref|ZP_05070009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083582|gb|EDZ61008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 431

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GK+TT ++L  AL+  K+    IG    +IG P+   +        + E    
Sbjct: 106 ITITGTNGKSTTAKILHDALTDQKRDSRLIG----NIGNPVLAEKNITKKTIFVIEASSY 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            L   R    + R   AVI  I   H+     +     AK ++ +   +    ++  DD
Sbjct: 162 QLDYSR----IFRSKYAVILNITSDHIERHKSLNNYVDAKFKLLKSQNRGSFAYIKKDD 216


>gi|294784927|ref|ZP_06750215.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
 gi|294486641|gb|EFG34003.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 468

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 40/328 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KG   V+ +T +  +   LS   +  ++ +  L +  + A+L ++ T 
Sbjct: 58  YNEHD---EENVKGVDYVIASTAIKETNPELS---YAKNNGITLLKRGELLAKLLNRETG 111

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ML+  + S   T    G           L  +  +   G  E  ++
Sbjct: 112 IAIAGTHGKTTTSSMLSAVMLSKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NY 227
              E       + P  AVIT I   HL     ++ I  +  E     +K   I +   N 
Sbjct: 162 EADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFISHTQKEAIICMDCENL 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++   L K KS        YS  K +NA    +  +    ++  E+ +  + +      
Sbjct: 222 KEAITRLPKGKS-----VITYSI-KDENASIFAKNIRITDRKTIFELYINKELIGEFSLN 275

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF---- 338
           I G H  QN L  + +        +   +AL+ F   +G  +RY       L  G+    
Sbjct: 276 IPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKF---KGSKRRYDVLFDKELENGYGNKT 332

Query: 339 --FTLIDESYNANPASMKAAISVLSQIS 364
               +ID+ Y  +P  +K  +  +  I 
Sbjct: 333 KKVRIIDD-YAHHPTEIKVTLKAIKSID 359


>gi|208434418|ref|YP_002266084.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Helicobacter pylori
           G27]
 gi|226711914|sp|B5Z6L9|MURD_HELPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|208432347|gb|ACI27218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Helicobacter pylori
           G27]
          Length = 422

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 31/157 (19%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TII+I+G+ GKTTT EMLT  L   K   A  G    +IG PL +          + E  
Sbjct: 96  TIISISGTNGKTTTTEMLTALLEDFK---AVSGG---NIGTPL-IELFEKQSPLWVLETS 148

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG------- 221
              L      T+   P I ++  +   HL+     E   +AK ++   + KT        
Sbjct: 149 SFSLH----YTNKAYPLIYLLINVEADHLTWHCNFENYLNAKLKVLTLMPKTSLAILPLK 204

Query: 222 -------------TIFLNYDDSFFELLKAKSHALGIK 245
                         IF ++ +   E LK  S+AL  K
Sbjct: 205 FKEHPIIQNSQAQKIFFDHSEEVLERLKIPSNALFFK 241


>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
 gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
          Length = 466

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G    +IG  L L       D+ I 
Sbjct: 122 TDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAG----NIGSSLALQVATEKHDYYII 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 178 ELSSFQLDNM----YKFRANIAVLMNITPDHLDRYD 209


>gi|126643342|ref|YP_001086326.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 30/295 (10%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L           F + 
Sbjct: 91  IAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALGE-------SRFIVA 142

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 143 EADESDASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 200

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   +S   V  +G+  + +  +
Sbjct: 201 DDANIREILPR---VG-RPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTIN 256

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L  +G+ +      +   +AL  F    G G+R++      L +G   L+
Sbjct: 257 QPGLHNVLNALAAIGVATDEGVSDEAISRALKGF---SGVGRRFQVQGEFELGEGNVKLV 313

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           D+ Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS
Sbjct: 314 DD-YGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLS 363


>gi|39998162|ref|NP_954113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
 gi|62900554|sp|Q748D4|MURD_GEOSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39985108|gb|AAR36463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
          Length = 452

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 146 HIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG PL  L      VD  + E+    L  IR      RP +AV+  I   HL  ++  +
Sbjct: 142 NIGNPLIELVETGAAVDRVVVEISSFQLEWIRSF----RPTVAVLLNITEDHLDRYATYQ 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           E   AKA IF+    +    LN DD     L  ++ A
Sbjct: 198 EYIDAKARIFKNQTASDWAVLNVDDPIVAGLAGRTCA 234


>gi|323699053|ref|ZP_08110965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           ND132]
 gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 38/203 (18%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GPH  GH                + D++  + S  +PV  +  VL  +    V + L 
Sbjct: 66  VVGPHEKGH--------------FADADVI--VLSPGVPVRKLAPVLEGVPARNVVSELE 109

Query: 106 S-----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMP 157
                 +A I+A+TGS GKTTT  +++  L    +     G+    IGVPL    L   P
Sbjct: 110 FASWFIEAPILAVTGSNGKTTTTTLISEILEKAGRRVFTGGN----IGVPLCEYLLDMEP 165

Query: 158 VDVDFGIFELGMSHLGE-IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            ++   + E+    L   +RF     +PH+ +    +  HL   + ++E   AK  +F  
Sbjct: 166 AEII--VLEVSSFQLQNCLRF-----KPHVGLFLNFSANHLDYHADLDEYLDAKLHLFSR 218

Query: 217 LEKTGTIFLNYDDSFFELLKAKS 239
           +       L+  +S   LL  +S
Sbjct: 219 MGPEDIALLH--ESLHPLLDGRS 239


>gi|283769653|ref|ZP_06342549.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
 gi|283103921|gb|EFC05307.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
          Length = 430

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165
           +  +I ITG+ GK+TT  ++   L   KK    +G+    IG P       ++     +F
Sbjct: 102 RNQVIGITGTKGKSTTSSLVYSLLKQEKKV-VLVGN----IGKPCFEEIEAMEEGALAVF 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           EL    +   R     V P+IAV+  +   HL ++   E+   AK+ I+
Sbjct: 157 ELSCHQMEYTR-----VSPYIAVLLNLYEEHLDHYGSFEKYGLAKSHIY 200


>gi|262364614|gb|ACY61171.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
          ligase [Yersinia pestis D182038]
          Length = 127

 Score = 37.4 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
          VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S+
Sbjct: 17 VPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSV 76

Query: 82 S----IPVFGVDDVLGALNKLA 99
          +    +PV  + ++   L+ LA
Sbjct: 77 AEIHGVPVIYLRNLNQHLSTLA 98


>gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
          Length = 494

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 104 RPAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 163 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 209 FDSFVERIVSGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 268

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 269 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 326

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 327 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 381


>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G    +IG  L L       D+ + 
Sbjct: 100 TNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAG----NIGKSLALQVATDQHDYYVI 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           EL    L  +    +  R +IAV+  I P HL  ++
Sbjct: 156 ELSSFQLDNM----YKFRANIAVLMNITPDHLDRYN 187


>gi|227544876|ref|ZP_03974925.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300909904|ref|ZP_07127364.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
 gi|68160890|gb|AAY86891.1| lr1633 [Lactobacillus reuteri]
 gi|227185150|gb|EEI65221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300892552|gb|EFK85912.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
          Length = 456

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++++TGS GKTTT  +  + ++   K       Y  +IG+  +     +  D G  +  +
Sbjct: 114 LVSVTGSNGKTTTTTLTQLMIAENAKYQV---KYAGNIGISFS----KIAEDLGPDDTLV 166

Query: 170 SHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           + L   + L    + PHIA+IT I   HL      E   +AK  I     K   + +N+D
Sbjct: 167 TELSSFQLLGAPTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWD 226

Query: 229 DSFFELLKAKSHALGIKTIYSFGK 252
              ++ +  +S A    TI  F +
Sbjct: 227 RDEWQKIAQRSQA----TIVPFSR 246


>gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 476

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS D+R +     F   +G  YDG  F+  A+ KGA  VV+  + +        P  
Sbjct: 23  LQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEALDKGA--VVLCDEPLKQEHVYYTPY- 79

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            V+ +  AL +L     L ++  +I +TG+ GKT+   +++  L+
Sbjct: 80  -VERIRQALLELYYGD-LCARLHVIGVTGTNGKTSVASIISQLLA 122


>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 432

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +I ITGS GK+T  ++LT  ++      A  G    +IG+P  L  +   +++ + 
Sbjct: 99  AKAPVIGITGSNGKSTVTKLLTQMIADSGMLVAIGG----NIGIP-ALDCLNEKIEYYVL 153

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           EL    L +  +  +L+     V+  I P HL  +S  E    +K  +++
Sbjct: 154 ELSSYQL-DYSYHLNLIT---GVVLNITPDHLDRYSSFEYYIHSKLSLYQ 199


>gi|332534480|ref|ZP_08410317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036048|gb|EGI72525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 451

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 45/288 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPV-- 158
            L   + ++A+ G+ GKTTT  ML   L  + +K  +  IG    + GV   +   P   
Sbjct: 98  NLLQDSWVLAVAGTHGKTTTASMLAWVLEYAGLKPGF-LIGGIVQNFGVSAKVGETPFFV 156

Query: 159 ----DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + D   F+         +F+ +L  P   ++  +   H   F  +  I      + 
Sbjct: 157 IEADEYDTAFFD------KRSKFVHYL--PRTLILNNLEFDHADIFEDLNAIKKQFHHLM 208

Query: 215 EGLEKTGTIF-----LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             L ++G +      +  +D   + L + S  LG    Y   K+  ++F           
Sbjct: 209 RTLPQSGKVIWPKQDVALNDVIAQGLWSDSETLGDDWSYELIKADGSEFN---------- 258

Query: 270 SWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRG 327
               V L G K   V    IG H  +N +MT+     +   +D +I AL  F  PK  R 
Sbjct: 259 ----VLLNGEKQGTVCWQAIGEHNVKNAIMTIAAARHVGIAIDHSIDALGEFISPK--RR 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              +  +N      + + +  +P ++K  ++ L   +  G+ + IA+L
Sbjct: 313 MELKADINN---IKVYDDFAHHPTAIKTTLAGLR--AKVGDEKIIAIL 355


>gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Salmonella enterica subsp. enterica serovar Typhi str.
          J185]
          Length = 90

 Score = 37.4 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
          D+R + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D  
Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84

Query: 93 GALNKL 98
           A  +L
Sbjct: 85 QAFGQL 90


>gi|146281466|ref|YP_001171619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri A1501]
 gi|145569671|gb|ABP78777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           stutzeri A1501]
          Length = 447

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA I+AITGS  K+T   ++    ++  +T A  G    ++G P           + + 
Sbjct: 106 AKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGG----NLGTPALDLLADDVDLY-VL 160

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 161 ELSSFQLE----TTEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQ---VVV 213

Query: 226 NYDDSF 231
           N DD  
Sbjct: 214 NRDDRL 219


>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 450

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 34/226 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  IAITGS GKTTT  +    L+ +  +    G    +IG  L    +    D  + EL
Sbjct: 105 AKFIAITGSNGKTTTTLLTHHILAQLGYSVGLGG----NIGTSLARQIIHEKKDVYVLEL 160

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
               L ++    +  +  +AV+  I P HL  +    E   ++K  IF+ L         
Sbjct: 161 SSFQLDDM----YTFKADVAVLLNITPDHLDRYEYKFENYTASKFRIFQNLTPADYYITY 216

Query: 227 YDDSFFELLK------AKSHALGIKTIYSFGK-SKNADFQLRKWKQ----CSEQSWMEVQ 275
            +DS  E  K      A+   + +K +YS G  S     Q+         C+ +   E  
Sbjct: 217 SEDSVIESYKKDHPVDARYVPVSLKQLYSAGAYSDEKTIQIHALDDTVVTCNTE---EFP 273

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           LQGK     H+ I    A N  +++G      AD+  +I ++  F 
Sbjct: 274 LQGK-----HNYINIMAALNAAVSIG------ADIHKSIASIKSFR 308


>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
 gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
          Length = 438

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 27/257 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + K          +IG+P L+L + P  +   +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGWQVGVGGNIGLPALSLLQSPAQLY--V 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      TH ++   A +  +   H+  +  G+++  +AK  ++E  +     
Sbjct: 157 LELSSFQLET----THSLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYENAQ---IC 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    ++        K   SFG     D+ L K +Q S   W+ V+ +      
Sbjct: 210 IVNADDALTMPVRGAD-----KRCVSFG-VDFGDYHLNK-QQGS--IWLRVKGEKVLNTA 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +     +++ AL+ F+   G   R++          I+
Sbjct: 261 EMKMAGQHNYTNALAALALADAVGLPRASSLAALTQFN---GLAHRFQLVHEHQGVRWIN 317

Query: 344 ESYNANPASMKAAISVL 360
           +S   N  S +AA++ L
Sbjct: 318 DSKATNVGSTEAALNGL 334


>gi|257066466|ref|YP_003152722.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
 gi|256798346|gb|ACV29001.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
          Length = 462

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 123/308 (39%), Gaps = 33/308 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129
           N +++A+   L++PV      LGAL        +R+    IA++GS GK+TT  M++ I 
Sbjct: 84  NEELIAA-KKLNVPVVTRGVFLGAL--------MRNYKNSIAVSGSHGKSTTTSMISKIL 134

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + S K     +G           L  M  +V  G  E  ++   E +       P   +I
Sbjct: 135 MHSDKDATILLGG---------ELDEMKGNVRVGSEEYLVTEACEYKGNIRYYYPQTLII 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   HL  +  +++I     E     ++      N ++    L+     ++  K I  
Sbjct: 186 LNIDEDHLDYYKDLDDIVDTFREYLSNQDENSMTITNLNEENNRLI---FDSVKGKLITY 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSIL 306
             ++  AD+     K   E       L+ ++ +V H     IG H   N + ++      
Sbjct: 243 AQENDEADYCAFNIK-FDEIGRPNFDLRMRNGDVEHFELGVIGRHNINNAMASIIATYEN 301

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D++T  K +  +   EG  +R +        T++ + Y  +P+ +K  +  L +   H
Sbjct: 302 GIDIETIRKNILKY---EGLDRRMQIIGEVDDATIMTD-YGHHPSEIKVTLDALKE---H 354

Query: 367 GEGRRIAV 374
            +GR I V
Sbjct: 355 TKGRLICV 362


>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
 gi|118595701|sp|Q31I61|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
          Length = 449

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +V+G +   A AA       I+AITGS GK+T   + T+   ++K+    +G   N IG 
Sbjct: 86  EVIGDIELFARAA----GKPIVAITGSNGKST---VTTLVAEALKEAGYAVGVGGN-IGC 137

Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           P L L   P + D  + EL    L      T+ ++   A +  I+  H+  +  +E+   
Sbjct: 138 PALDLLTHPTEFDVYVLELSSFQLE----TTYSLQTIAATVLNISEDHMDRYLALEDYIQ 193

Query: 209 AKAEIFEGLE 218
           AK  I    E
Sbjct: 194 AKMTILNNTE 203


>gi|325677954|ref|ZP_08157596.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
 gi|324110508|gb|EGC04682.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
          Length = 477

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 174/451 (38%), Gaps = 68/451 (15%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           + F   K  + +G + I++     A ++  N +++A+  S +I V    ++LG +     
Sbjct: 60  KVFLGQKAENIEGAELIIYT----AAIMADNPELIAAKASDAI-VCERAEILGVITGWYS 114

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A        + + G+ GKTTT  MLT       +  +C+      IG      ++P   
Sbjct: 115 NA--------LCVCGTHGKTTTSSMLTEIFVDAGEDISCV------IG-----GKLPSIG 155

Query: 161 DFGIFELGMSHLGE-IRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             G      S + E   +  H ++  P +A+I  +   HL  F  IE I  +    F  +
Sbjct: 156 GSGRAGKSDSMVCEACEYQDHFLKLFPDVAIILNVDADHLEYFKNIENIIKS-FHTFADM 214

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                IF N DD+     +     +  K + SFG  +  D+      +    +   V  +
Sbjct: 215 ATKAVIF-NGDDAN---TRKSLEGISGKELISFGWDRKNDYSAEIISKQGLVTKFRVFFK 270

Query: 278 GK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ + E+  +  G H   N L  +          + A K L+ FH   G  +R++     
Sbjct: 271 GEPAAEMEINVPGDHNVVNALAAIAAARYSGLSFEDAAKGLAAFH---GAIRRFQLIDKV 327

Query: 337 GFFTLIDESYNANPA----SMKAAIS-----VLSQISPHGEGRRIAVLGDMCE------- 380
           G  T++D+ Y  +PA    ++KAA       V +   P    R   ++ D          
Sbjct: 328 GGITIVDD-YAHHPAEIAVTLKAAKGLDFNRVWAVFQPFTYSRTEILMDDFARALEIADI 386

Query: 381 ------MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
                 MG   ++ H    E+L     + VW +  H +  K    +    ++ E +D   
Sbjct: 387 SVITDIMGSREKNEHGIYTEMLGAKTKNAVWFNTPHHVVDKQTAEQK-EKNFDECID--- 442

Query: 435 LFIQSSLVDGDVVVVKSSNSCG-FYRLINLL 464
            +I  +   GD+V+   +  CG  Y+L   L
Sbjct: 443 -YIIKNKQQGDIVI---TLGCGDVYKLAKKL 469


>gi|168218219|ref|ZP_02643844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
 gi|182379758|gb|EDT77237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
          Length = 458

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           K  +  +TGS GKTTT  +++  LS    KT+        +IG PL      + + D  +
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWT-----GGNIGTPLFSNIEEIKEEDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T  V   +A++T I P HL     ++E   AK  +F+   +   + 
Sbjct: 171 LELSSFQL-----MTMDVEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLV 225

Query: 225 LN 226
           +N
Sbjct: 226 IN 227


>gi|110801958|ref|YP_699716.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens SM101]
 gi|118595651|sp|Q0SQ91|MURD_CLOPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110682459|gb|ABG85829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens SM101]
          Length = 458

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           K  +  +TGS GKTTT  +++  LS    KT+        +IG PL      + + D  +
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWT-----GGNIGTPLFSNIEEIKEEDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T  V   +A++T I P HL     ++E   AK  +F+   +   + 
Sbjct: 171 LELSSFQL-----MTMDVEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLV 225

Query: 225 LN 226
           +N
Sbjct: 226 IN 227


>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500772|sp|Q4ZNY8|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  +V+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDEVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           N  D+    L  +         ++FG +K  DF     ++ + + ++  Q +
Sbjct: 215 NGQDALSRPLIGEG-----LPCWTFGLNK-PDFHGFGLREENGEKYLAFQFE 260


>gi|85714971|ref|ZP_01045956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
 gi|85698168|gb|EAQ36040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
          Length = 466

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  +AITG+ GK+TT    T  ++ + +          +IG  +     P      + E+
Sbjct: 114 APFVAITGTNGKSTT----TALVAHLMREAGHDVQMGGNIGTAILSLEAPRRGRVHVIEM 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +     L   + P + ++  ++P HL     IE  A  K  +  G++  GT  +  
Sbjct: 170 SSYQID----LAPSLDPTVGILLNVSPDHLDRHGTIEHYAEVKERLIAGVQPQGTAVVGV 225

Query: 228 DDSFFELLKAKSHALGIKTI 247
           DD +   +  +    G   +
Sbjct: 226 DDRWCAAIADRQERAGRNVV 245


>gi|194468379|ref|ZP_03074365.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
 gi|194453232|gb|EDX42130.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
          Length = 456

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++++TGS GKTTT  +  + ++   K       Y  +IG+  +     +  D G  +  +
Sbjct: 114 LVSVTGSNGKTTTTTLTQLMIAENAKHQV---KYAGNIGISFS----KIAEDLGPDDTLV 166

Query: 170 SHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           + L   + L    + PHIA+IT I   HL      E   +AK  I     K   + +N+D
Sbjct: 167 TELSSFQLLGAPTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWD 226

Query: 229 DSFFELLKAKSHALGIKTIYSFGK 252
              ++ +  +S A    TI  F +
Sbjct: 227 RDEWQKIAQRSQA----TIVPFSR 246


>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
 gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP+++ I  I P HL     +E     K  I +  +   T  LNYDD+   +L+     L
Sbjct: 174 RPNVSAILNITPDHLDRHKTMECYTQVKESITKNQKDGDTCVLNYDDT---VLREFGETL 230

Query: 243 GIKTIYSFGKSK 254
            I  +Y   + K
Sbjct: 231 KINVVYFSSREK 242


>gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T17]
 gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
 gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
          Length = 482

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 92  RPAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 151 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 196

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 197 FDSFVERIVPGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 256

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 257 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 314

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 315 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 369


>gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
 gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
          Length = 481

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+++P   FFA KG  +   +F+  A++ G    V   D       + IP   
Sbjct: 36  DALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKAIEAGLAFYVSEIDY-----EVDIPAII 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V D+  A++ +A+      + +  ++A TG+ GKTT
Sbjct: 89  VHDIKQAMSLIAMEFHGHPQKQLKLLAFTGTKGKTT 124


>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
 gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
          Length = 494

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 144/381 (37%), Gaps = 60/381 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR++     F A+ G   DGH+++  AV+ GA  V+V+  +  S     + V  V+
Sbjct: 27  VTADSRAVKAGSLFIALDGATVDGHNYVNKAVESGAVAVLVSKPVEVS---SDVCVITVE 83

Query: 90  DVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           D   A+           A  +R    +I +TG+ GKTTT  M+   L +       IG+ 
Sbjct: 84  DTRAAMMSCVPYFFDYPANSMR----MIGVTGTNGKTTTTHMIRHILKAQGHKVGVIGTV 139

Query: 144 NNHIG---VPLTLARMPVDVDFG-----IFELGMSH-----------LGEIRFLTHLVRP 184
           +  IG    P+     P  VD       + E G++H           LG +  + +    
Sbjct: 140 HIMIGDTSYPIH-NTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY---- 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKAK 238
             AV T +   HL      E   +AK ++FE + K   I       +N DD++   +  K
Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGKGAVINIDDAYGHRVVEK 254

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     I ++    +            + S   V   G    V  +  G     N L 
Sbjct: 255 TTA----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLA 310

Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +G   +  I   D+D A+K  S        G+       Q F  ++D  Y   P  ++ 
Sbjct: 311 AIGACLLEGISMEDIDKALKTFSAV-----PGRFELIEEGQPFAVVVD--YAHTPDGLEN 363

Query: 356 AISVLSQISPHGEGRRIAVLG 376
            +     I    E R I V G
Sbjct: 364 ILQTAKAIQ---ENRIIVVFG 381


>gi|148543823|ref|YP_001271193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           reuteri DSM 20016]
 gi|184153225|ref|YP_001841566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227364727|ref|ZP_03848776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|325682646|ref|ZP_08162163.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
 gi|167017288|sp|A5VJ32|MURD_LACRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711917|sp|B2G6K4|MURD_LACRJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148530857|gb|ABQ82856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri DSM 20016]
 gi|183224569|dbj|BAG25086.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227070186|gb|EEI08560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|324978485|gb|EGC15435.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
          Length = 456

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++++TGS GKTTT  +  + ++   K       Y  +IG+  +     +  D G  +  +
Sbjct: 114 LVSVTGSNGKTTTTTLTQLMIAENAKHQV---KYAGNIGISFS----KIAEDLGPDDTLV 166

Query: 170 SHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           + L   + L    + PHIA+IT I   HL      E   +AK  I     K   + +N+D
Sbjct: 167 TELSSFQLLGAPTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWD 226

Query: 229 DSFFELLKAKSHALGIKTIYSFGK 252
              ++ +  +S A    TI  F +
Sbjct: 227 RDEWQKIAQRSQA----TIVPFSR 246


>gi|307720528|ref|YP_003891668.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978621|gb|ADN08656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 409

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-F 165
           K  II +TG+ GK+T   ++   L +  K     G+    IG P       +D +  I  
Sbjct: 96  KNQIIGVTGTKGKSTLVTLIDSLLKNAGKKSVLCGN----IGTPAFDILENLDDETTIVM 151

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           EL    L  + +       HIA++T +   HL  +  ++E  SAK  IF
Sbjct: 152 ELSSHQLYHVNY-----SVHIAILTNLFEEHLDYYKDVDEYYSAKFNIF 195


>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
 gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
          Length = 459

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 110 IIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGI 164
           II+ TG+ GKTTT   +   +  S  +   A    +        + A++  D   +D+ +
Sbjct: 93  IISFTGTNGKTTTSTKMAELLNFSGFRAKLAGNAGF--------SFAKLVADEEKLDYIV 144

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L         +  +IA I  + P HL+ ++ +E+    K  IF+   ++    
Sbjct: 145 LELSSYQLEN----NPQIHSNIAGIINLTPDHLTRYNSVEDYYITKFNIFDKQVESDFAL 200

Query: 225 LNYDDSFFELL 235
           +N DD  FE L
Sbjct: 201 INLDDKEFEKL 211


>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
 gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
          Length = 451

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---RMPVDVDFG 163
           +  IIAITGS GKTT   ++              G    +IG P+  A   R     D  
Sbjct: 115 RNKIIAITGSNGKTTVTSLVGHLCRECGLDTVVAG----NIGTPVLEAYEDRQEQSADVW 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L        A +  I+  HL+ +  + + A AK +IF G   +G  
Sbjct: 171 VLELSSFQLENTDHLNAAA----AAVLNISEDHLNRYDDLLDYAHAKDKIFRG---SGVQ 223

Query: 224 FLNYDDSFFELLK 236
            +N DD+    +K
Sbjct: 224 VINADDALCRAMK 236


>gi|168211219|ref|ZP_02636844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|182626019|ref|ZP_02953782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
 gi|170710774|gb|EDT22956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|177908726|gb|EDT71237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
          Length = 458

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           K  +  +TGS GKTTT  +++  LS    KT+        +IG PL      + + D  +
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWT-----GGNIGTPLFSNIEEIKEEDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T  V   +A++T I P HL     ++E   AK  +F+   +   + 
Sbjct: 171 LELSSFQL-----MTMDVEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLV 225

Query: 225 LN 226
           +N
Sbjct: 226 IN 227


>gi|110801072|ref|YP_697147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens ATCC 13124]
 gi|168215153|ref|ZP_02640778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
 gi|118595650|sp|Q0TMJ3|MURD_CLOP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110675719|gb|ABG84706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens ATCC 13124]
 gi|170713450|gb|EDT25632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
          Length = 458

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           K  +  +TGS GKTTT  +++  LS    KT+        +IG PL      + + D  +
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWT-----GGNIGTPLFSNIEEIKEEDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T  V   +A++T I P HL     ++E   AK  +F+   +   + 
Sbjct: 171 LELSSFQL-----MTMDVEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLV 225

Query: 225 LN 226
           +N
Sbjct: 226 IN 227


>gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 497

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 9  DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
          DLL+ ++   +       +  I+ DSR       FF IKG   DGH +     +KGA ++
Sbjct: 13 DLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEVAEKGAAVL 72

Query: 69 VVN 71
          +V 
Sbjct: 73 IVQ 75


>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
 gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 20/173 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA I+AI+GS  K+T   ++  +A+++ K+      +   ++G P  L  +  +V+  +
Sbjct: 107 AKAPIVAISGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDEVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH +   +A +  ++  H+  +SG+     AK  IF G ++     
Sbjct: 161 MELSSFQLE----TTHDLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQ---FV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +N  D+    L  +         ++FG  K  DF+    ++ + + ++  + Q
Sbjct: 214 VNRQDALSRPLIGEGM-----PCWTFGLGK-PDFKAFGIREENGEKYLAFEFQ 260


>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 495

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 25/230 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
           P   +  +++DSR  A  + F AI G   DG  +I  A+ +G   +V   +  A+ G++ 
Sbjct: 18  PARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAEGEAADGTVR 77

Query: 82  ---SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +PV  + ++   L+ LA     +   K  +I +TG+ GKTTT ++L     ++ +T
Sbjct: 78  EMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTTTQLLAQWSQALGET 137

Query: 137 YACIGSYNNHI---GVPL-TLARMPVDVD------------FGIFELGMSHLGEIRFLTH 180
            A +G+  N +    +P        VDV             F   E+  SH G ++    
Sbjct: 138 SAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFAAMEVS-SH-GLVQHRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +    AV T ++  HL     +E   +AK  +F G  + G + +N DD 
Sbjct: 196 ALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALF-GEHRVGQMIINADDE 244


>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
 gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGMNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAEYNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
            +            DD    +++ + H  GI    Y F + K
Sbjct: 202 IQNQTPDDAFIFWNDDP---IIQRELHKYGIHGHYYPFAERK 240


>gi|118580405|ref|YP_901655.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503115|gb|ABK99597.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 427

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 18/93 (19%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEML---------TIALSSIKKTYA-----CI 140
           + KL    ++        ITGSVGKTTT  M+         T+ALS+   TY      CI
Sbjct: 22  VRKLGFPLKITPHIPTACITGSVGKTTTCRMVASILRETGKTVALSTTLGTYVGDSPRCI 81

Query: 141 G-SYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           G S N   G  L   R    VD G+FE+    L
Sbjct: 82  GDSSNGRRGSRLLAERQ---VDAGVFEIARGGL 111


>gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 494

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149
           + AV A+L +  T + +TG+ GKTTT  ML +AL    +  ++A  G       N H G 
Sbjct: 104 RSAVLAKLMAGRTTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHG- 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  + E   S    +++      PH+AVIT I   HL  +  +E   + 
Sbjct: 163 ---------SGDCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAV 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
                E +   G + +  DD     L  ++  LGI+ + Y     +     L  W+Q   
Sbjct: 209 FDSFVERIVPGGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGV 268

Query: 269 QSWMEVQL-----QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   ++L       +   V+   + G HMA N L  L     + A  D  +  L+ F  
Sbjct: 269 GAVAHIRLASELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGF-- 326

Query: 323 KEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            EG  +R+     C + +    + D+ Y  +P  + A ++    +   G+G R  V+
Sbjct: 327 -EGVRRRFELVGTCGVGKASVRVFDD-YAHHPTEISATLAAARMVLEQGDGGRCMVV 381


>gi|209884381|ref|YP_002288238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872577|gb|ACI92373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
          Length = 465

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 90  DVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +V+G +       RL +  A  IAITG+ GK+TT    T   + + +          +IG
Sbjct: 95  EVIGDIELFCRERRLHAPGAPFIAITGTNGKSTT----TALTAHLMREAGFDAQMGGNIG 150

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             +     P      + E+    +     LT  + P + ++  +   H+     IE  A 
Sbjct: 151 TAILSLAPPAPQRVYVIEMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGSIEHYAE 206

Query: 209 AKAEIFEGLEKTGTIFLNYDDSF 231
            K  +  G+ + GT  +  DD F
Sbjct: 207 VKERLVVGVPRGGTAIVGVDDDF 229


>gi|28211898|ref|NP_782842.1| dihydrofolate synthase [Clostridium tetani E88]
 gi|28204341|gb|AAO36779.1| folylpolyglutamate synthase [Clostridium tetani E88]
          Length = 431

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
           ++D+ I E+G   LG     T++++P +++IT+I+  H+S   + IEEIAS KA I +  
Sbjct: 135 EIDYAIIEVG---LGGKSDSTNVIKPLVSIITSISYDHVSILGNTIEEIASEKAGIIK-- 189

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           E    I    ++  +++++        K IY
Sbjct: 190 ENVPVILYPQEEGAYKVIEKTCMEKDSKLIY 220


>gi|325124219|gb|ADY83742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 155 IVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++ D  L          W+   LQ
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGTL----------WLARGLQ 257

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 258 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 307


>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           18P13]
          Length = 462

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I  +TGS GKTTT  +++  L+   +     G+    +   L L     + D  + EL  
Sbjct: 118 IYGVTGSDGKTTTTTLISEMLAKTGRRVYKGGNIGKAL---LPLIETIREEDAAVVELSS 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  +R       P +AVIT I+P HL     +EE    K  +           LN D+
Sbjct: 175 FQLISMR-----RSPDVAVITNISPNHLDVHGTMEEYIGCKVNLIAHQNAYSKTVLNLDN 229

Query: 230 S 230
           +
Sbjct: 230 A 230


>gi|84516392|ref|ZP_01003751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509428|gb|EAQ05886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
          Length = 470

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 20/260 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L+   +     G+    + + +  AR   D +  + EL  
Sbjct: 122 VVAVTGSNGKSTTSALIHHILAESGRPAQLAGNIGRGV-LDIAPAR---DGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV+T ++P HL   +G     +AK  +F EG      I ++ +
Sbjct: 178 YQTDLARALT----PDVAVLTNLSPDHLDRHAGHGGYFAAKRRLFAEGGPDRAVIGVDEN 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEV 283
           +  +    A   A G+        S         W   + + ++     G+      +  
Sbjct: 234 EGRY---LANQLAQGVGDDRVVLVSSGQKLTEAAWSVFARKGFLSEYRHGRQVGSIDLRA 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H  QN      +   L      AI+A    +P  G   R +   ++G    ++
Sbjct: 291 IAGLPGAHNHQNACAAYAVCRTLGLG-PRAIEAAMQSYP--GLPHRSQLVADRGGVRFVN 347

Query: 344 ESYNANPASMKAAISVLSQI 363
           +S   N  S   A+   ++I
Sbjct: 348 DSKATNVDSAAKALQAFARI 367


>gi|293610054|ref|ZP_06692355.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827286|gb|EFF85650.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 155 IVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++ D  L          W+   LQ
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGML----------WLARGLQ 257

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              KS ++   G+  H   N L  L +   +   +++ ++ L  F     +G  +RC
Sbjct: 258 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----KGLEHRC 307


>gi|228941001|ref|ZP_04103559.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973932|ref|ZP_04134507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980521|ref|ZP_04140831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228779341|gb|EEM27598.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228785798|gb|EEM33802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818680|gb|EEM64747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941682|gb|AEA17578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           SKA  + ITGS GKTTT  MLT  +    + +  I     +IG V   +A+   + +  +
Sbjct: 110 SKAPFVGITGSNGKTTTT-MLTFEMLKEGQKHPVIAG---NIGTVACEVAQDAKENEVVV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P IA    +  AHL      +E   AKA +F+   +     
Sbjct: 166 TELSSFQLMGVESF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDYSV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           +N DD+    L A +   G K ++S  K 
Sbjct: 222 INADDADVMALSADTK--GQKILFSTTKE 248


>gi|300361456|ref|ZP_07057633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
 gi|300354075|gb|EFJ69946.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
          Length = 460

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 42/258 (16%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA 129
           MV     L+IPV    ++  ALN         S+A  + +TGS GKTT    T+ ++   
Sbjct: 89  MVEKALKLNIPVITEPEI--ALN--------VSEAPYVCVTGSNGKTTTVMLTQRIMDHH 138

Query: 130 LSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           LS        +G    +IGVP++ +     + D  + E+    L  +      ++P +A 
Sbjct: 139 LSKNGGHAYAVG----NIGVPISEVVEKATNKDLLVVEMSSFQLLGVTD----IKPKVAA 190

Query: 189 ITTI-APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKSHALGI 244
           I  I    HL      +    AK  I +  ++      N+D       EL K K+     
Sbjct: 191 IVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQNDYFIANFDQKNILDRELKKTKAK---- 246

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
             + +F ++ K AD+ +          ++E +   + M++    I G H  QN L+ + I
Sbjct: 247 --VQTFSETDKTADYFIG-------DEYLESKDDHQIMKISDIKIPGIHNQQNCLVAIAI 297

Query: 303 VSILTADVDTAIKALSVF 320
             ++ AD      ALS F
Sbjct: 298 SKLMGADDSDIQYALSTF 315


>gi|283796967|ref|ZP_06346120.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
 gi|291075380|gb|EFE12744.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
          Length = 465

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 144/360 (40%), Gaps = 37/360 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+    IA++G+ GKTTT  ML+            +   +  I V   L  +  ++  G
Sbjct: 113 MRNYREAIAVSGTHGKTTTTSMLSEIF--------LVAEADPTISVGGILPSIGGNIRVG 164

Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E  ++   E    FL     P I VI  I   H+  F  + +I S+     +   K G
Sbjct: 165 GPEFFITEACEYTNSFLEFF--PTIEVILNIEEDHMDFFKDLADIRSSFTRFAKKTPKQG 222

Query: 222 TIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGK 279
            + +N + + + E++K          + +FG  +  D+   +    S  +   +  ++G+
Sbjct: 223 AVVINGEIEDWQEIVKNTE-----GRVITFGTDRGFDYSAGEISYDSLARPTFDFYIRGE 277

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             + +  G+ G H   N L            ++   + L  F   + R ++ +  LN   
Sbjct: 278 KRDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFEK-KGVLNG-- 334

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  ++A++                PH   R  A L +  E   LS +  
Sbjct: 335 VTIIDD-YAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAEA--LSMADC 391

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I LA++ +      + +S   +    + L +   V Y  T + +  F++ S + GD+++ 
Sbjct: 392 IVLADIYAARETDTLGISSRDIAEKIERLGKK--VWYFHTFEEIEEFLKKSCIHGDLLIT 449


>gi|197124217|ref|YP_002136168.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp. K]
 gi|220918997|ref|YP_002494301.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|229486422|sp|B4UES2|MURC_ANASK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763735|sp|B8J8E9|MURC_ANAD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196174066|gb|ACG75039.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter sp. K]
 gi|219956851|gb|ACL67235.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 458

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 130/334 (38%), Gaps = 51/334 (15%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYAC 139
            IPV    ++L  L +L            +AI GS GKTTT  M    +A + +  T A 
Sbjct: 91  KIPVIPRAEMLAELMRLKYG---------VAIAGSHGKTTTTSMAAHLLAHAGLDPT-AV 140

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +G   N  G    L +     D+ + E   S    +R     + P IA++T I P HL +
Sbjct: 141 VGGKVNAFGSNAKLGKG----DYMVVEADESDGSFLR-----IPPTIAIVTNIDPEHLDH 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +   + +     +    +   G   L  D    + +         K   ++G+S  AD++
Sbjct: 192 WKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVE----KRAVTYGESHQADYR 247

Query: 260 LRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               +        +   + +++   EV    +G H A N L  + +   +        +A
Sbjct: 248 AEAIELSGHAVRFDAFRRDEALGRFEVAM--VGRHNALNALAVIALGDEMGIPPLVTREA 305

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHG 367
           L  F   +G  +R+         T++D+ Y  +PA +KA +          V+    PH 
Sbjct: 306 LRSF---QGVQRRFTVRGEAAGVTVVDD-YGHHPAEVKATLQGAREAFKRRVVCLFQPH- 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              R     D+  M E + +F+   A+VL L +I
Sbjct: 361 ---RYTRTRDL--MAEFATAFND--ADVLLLTDI 387


>gi|119492219|ref|ZP_01623629.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119453276|gb|EAW34442.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 525

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 77/392 (19%), Positives = 149/392 (38%), Gaps = 61/392 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTY 137
           +L  P+F   D+L AL           +   IA+ G+ GKTTT  ++   +  + +  T 
Sbjct: 135 ALGCPIFHRSDILAAL---------IGEYQSIAVAGTHGKTTTSSLIAYMMLEAGLDPTI 185

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G  N   G    + + P    + + E   S    ++F      P I +IT I   H 
Sbjct: 186 LVGGEVNAWEGN-ARVGQSP----YLVAEADESDGSLVKF-----SPAIGIITNIELDHP 235

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            ++  ++++ S     FE   +     +   D            +  +  YS   +  AD
Sbjct: 236 DHYQTLDQVIST----FETFTEHCQTLIGCID-----CATVRERIQPQISYSLDPNSGAD 286

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           + +   +  S+ S  +V  +G+ +  +H   +G H  QN L  + +  ++  +     +A
Sbjct: 287 YTVDAVEYGSDGSLAQVSERGQLLGQLHVKLLGQHNLQNTLAAVAVGRLVGLEFSAIAEA 346

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------------------ 358
           +S F   EG  +R+    +      ID+ Y  +P+ ++A +                   
Sbjct: 347 ISTF---EGAKRRFEHRGSSNDILFIDD-YAHHPSEIRATLGAARLRKGSHTATNIPVQR 402

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           V++   PH   R    L       E SQ F   DL  +  +Y+         +   L D+
Sbjct: 403 VVAIFQPHRYSRTQTFL------SEFSQCFADADLVVLTDIYSAGEANTGQINGQQLADS 456

Query: 418 L-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +      V+Y ++++ +   +   L  GD+ +
Sbjct: 457 IGTYHPQVYYRQSLESVKTLLSEILKPGDLAL 488


>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 452

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 92  LGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           +  ++++  A+R L     + AITGS GKTTT   +T  L +     A  G+      V 
Sbjct: 87  ISVISEIEFASRYLPEDTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGN------VG 140

Query: 151 LTLARMPVDVDFGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
            ++AR+  +     + + MS     G  +F      P+++V+  I P HL  +    E  
Sbjct: 141 FSMARLVAEDPHKYYVVEMSSFQLDGTYKF-----HPNVSVLLNITPDHLDRYKHKFELY 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           A +K  I + L K  +     +D+F +
Sbjct: 196 ALSKMRITQQLGKGDSFVYWEEDAFIK 222


>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 453

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 146 HIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P +       D    + E+    L  I++     +P +  I  I P HL+    ++
Sbjct: 144 NIGFPFIDYVESSTDDTIFVIEISSFQLETIKYF----KPMVGCILNITPDHLNRHMNMD 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDS 230
               AK  IFE +++ G   LN D+S
Sbjct: 200 NYIRAKMRIFENIDQEGYSVLNMDNS 225


>gi|304314889|ref|YP_003850036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588348|gb|ADL58723.1| predicted UDP-N-acetylmuramyl tripeptide synthase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 469

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 22/210 (10%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
           A +E    I+  H+     I  A ++G   ++       +   L +P+  VD +  A N 
Sbjct: 30  AAEEGDIVIR--HWIDDRGIQIASERGVAAIITQDLRSDASKVLDVPIILVDRIEIA-NA 86

Query: 98  LAVA---ARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYN--NHIGVPL 151
           LA++    R  S +  IA+TG+ GK+TT  M+  I  ++ + +Y    S +  N +  P+
Sbjct: 87  LALSWTINRFASSSRRIAVTGTNGKSTTTHMINHIITTAGRSSYTNTDSRSEFNTLIDPV 146

Query: 152 TL-----ARMPVDVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                  A     ++F + E       LG       + +T  ++P + VIT +A  H+  
Sbjct: 147 VAQHIAEAASREQLEFMVIEVSEVQGWLGRVMRDHAQLMTSAIQPEMVVITNVAMDHIGL 206

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              ++++    +     ++ +G   LN DD
Sbjct: 207 VESVDDVFREVSGALRAMD-SGVAVLNSDD 235


>gi|266624107|ref|ZP_06117042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           hathewayi DSM 13479]
 gi|288864069|gb|EFC96367.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           hathewayi DSM 13479]
          Length = 355

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 18/186 (9%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T  A    D  + + E+    L  I       RP ++ I  I P HL+    ++
Sbjct: 140 NIGTPYTSTALRTTDQSYTVAEISSFQLETITDF----RPDVSAILNITPDHLNRHKTMD 195

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              + K  I E   K     LNYDD    +L+     +  + IY   +      +L    
Sbjct: 196 CYINVKERIAENQTKEDACILNYDDP---VLRRFGETIAPRVIYFSSR------ELLPEG 246

Query: 265 QCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            C +   +     G  ME+++    + +G H  +N++    I   L   ++T    +  F
Sbjct: 247 ICLDGDMIIRNHDGVRMEIINIHDMNLLGRHNHENVMAAAAIAMELGVPLETIQSVIRDF 306

Query: 321 HPKEGR 326
              E R
Sbjct: 307 KAVEHR 312


>gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
 gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
          Length = 485

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 144/376 (38%), Gaps = 46/376 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR + P + FFA+ G   DG  FI  A+       V      A  G+  +P  
Sbjct: 22  VTGLAVDSREVKPGDLFFALAGTKTDGARFIDAAIAA---GAVAVVGDHAPAGAC-VPSV 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              +   AL   A     R  ATI A+TG+ GKT+           +    A IG+    
Sbjct: 78  ATSNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGT---- 133

Query: 147 IGV---------------PLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVRP 184
           IGV               P++L R   ++D  + E G++HL       G  ++    VR 
Sbjct: 134 IGVVAPSRAVYGSVTTPDPISLHR---ELDQLVGE-GVTHLALEASSHGLDQYRLDGVRV 189

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYD-DSFFELLKAKSHAL 242
             A  T ++  H+     +      K  +F  L E  G   ++ D D    +++A S A 
Sbjct: 190 RAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGVAVISADHDCSGTVIEAAS-AR 248

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300
            ++ +    +       +R      E     V L+  G+   +    +G    +N L++ 
Sbjct: 249 NVRIMRVGRRGDGTHSGIRLADAVIEGFAQRVTLEHAGRERIIRLPLVGEFQIENALVSA 308

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V     D D    AL   H +  +G+        G    +D  Y   P ++  A+  L
Sbjct: 309 GLVIGTGGDADQVFAALE--HLEGAKGRLELVGERNGAPVFVD--YAHKPDALAKALQAL 364

Query: 361 SQISPHGEGRRIAVLG 376
               P+   + + V G
Sbjct: 365 ---RPYASRKLVVVFG 377


>gi|325269661|ref|ZP_08136274.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
 gi|324988029|gb|EGC19999.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
          Length = 498

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 12/151 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  ++              G+  N +   L +A
Sbjct: 145 ISEIEFAGRY-TDSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGNSLA--LQVA 201

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
             P    + I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 202 EDP--HAYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 255

Query: 214 FEGLEKTGTIFLNYDDSFF--ELLKAKSHAL 242
            +   K  +     DD     EL K   HA+
Sbjct: 256 IQNQTKDDSFIYWNDDPVIKKELEKFDVHAV 286


>gi|260550189|ref|ZP_05824402.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
 gi|260406717|gb|EEX00197.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
          Length = 482

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 30/295 (10%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L     +  F + E  
Sbjct: 125 IAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEAD 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 180 ES---DASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   +S   V  +G+  + +  +
Sbjct: 235 DDANIREILPR---VG-RPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTIN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L  +G+ +      +   +AL  F    G G+R++      L +G   L+
Sbjct: 291 QPGLHNVLNALAAIGVATDEGVSDEAISRALKGF---SGVGRRFQVQGEFELGEGNVKLV 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           D+ Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS
Sbjct: 348 DD-YGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLS 397


>gi|134298541|ref|YP_001112037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum reducens MI-1]
 gi|189082878|sp|A4J2A9|MURD_DESRM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134051241|gb|ABO49212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
           reducens MI-1]
          Length = 456

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKA 237
           T    P +AV+  + P HL     +EE   AK+ IF   + +  + LNYDD +  EL K+
Sbjct: 172 TEYFAPKVAVMLNLTPDHLDRHGSMEEYIKAKSCIFIHQKPSDYVVLNYDDLALRELAKS 231


>gi|257462517|ref|ZP_05626929.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D12]
 gi|317060172|ref|ZP_07924657.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
 gi|313685848|gb|EFS22683.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
          Length = 447

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  + S+  T    G           L  +  +   G+ E  ++
Sbjct: 104 IAVAGTHGKTTTSSMMSATMLSLDPTIVVGG----------ILPEIASNAKVGMGEYFIA 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       +RP  A+IT I   HL     +E I  +  +  +  E+   +  +    
Sbjct: 154 EADESDNSFLFMRPKYAIITNIEEDHLETHGNLENIKKSFRQFVDQTERQVLVCKD---- 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----QCSEQSWMEVQLQGK 279
               +  +S     + I S+G  + AD   +  +    + S + W E + QG+
Sbjct: 210 ---CVNVRSVFSENEKITSYGIEQEADIMAKNIEIVDGKTSFEVWTEGENQGR 259


>gi|18311441|ref|NP_563375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens str. 13]
 gi|30316081|sp|Q8XHM4|MURD_CLOPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|18146125|dbj|BAB82165.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           perfringens str. 13]
          Length = 458

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           K  +  +TGS GKTTT  +++  LS    KT+        +IG PL      + + D  +
Sbjct: 116 KGRVYGVTGSDGKTTTTTIVSKLLSQEGYKTWT-----GGNIGTPLFSNIEEIKEEDKVV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L     +T  V   +A++T I P HL     ++E   AK  +F+   +   + 
Sbjct: 171 LELSSFQL-----MTMDVEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLV 225

Query: 225 LN 226
           +N
Sbjct: 226 IN 227


>gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
           ananatis AJ13355]
          Length = 438

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A I+AITGS GK+T    +T  +  + K          +IG+P L+L + P      +
Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGWQVGVGGNIGLPALSLLKAP--AQLYV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      TH ++   A I  +   H+  +  G+++  +AK  I+E  +     
Sbjct: 157 LELSSFQLET----THSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQ---VC 209

Query: 224 FLNYDDSF 231
            +N DD  
Sbjct: 210 VVNADDGM 217


>gi|307718045|ref|YP_003873577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
 gi|306531770|gb|ADN01304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
          Length = 459

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           ++ I+A+TGS GK+TT   L   LS+     A +G   N    PLT  R   +    + E
Sbjct: 111 RSPILAVTGSKGKSTTASALHHILSAAFPG-ARLG--GNITTSPLTFLRELSEESPVVLE 167

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    LG++        P +A +T I P H + ++ +E     K  I    + + T    
Sbjct: 168 LSSWQLGDLGGRISFT-PQVAALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTFLYP 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D +   + A + A    T   F + +      R     +EQ  + +   GK + ++  
Sbjct: 227 ASDPWGRWMAANTPA----TALPFFEERPTSPPPRA-AFLTEQEGLFLD-HGKEIPLLPE 280

Query: 287 GI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +   G H   N+L+   +      D       LS F    G   R      +G  +  +
Sbjct: 281 RLLVPGAHNRLNLLLAGAMAYTFGTDPALIRTRLSSF---PGIPHRLELVREKGGVSFYN 337

Query: 344 ESYNANPASMKAAISVL 360
           +S    P ++ AA+S  
Sbjct: 338 DSAATIPDAVLAAVSAF 354


>gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio
          fibrisolvens 16/4]
          Length = 490

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          DSR +     F  I G   D HDFI   ++KGA  +++  D+
Sbjct: 29 DSRKVEKDSVFVCISGTVRDAHDFIPDVIEKGATAIIIEKDV 70


>gi|169794349|ref|YP_001712142.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AYE]
 gi|184159850|ref|YP_001848189.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ACICU]
 gi|213159076|ref|YP_002321074.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|215481905|ref|YP_002324087.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|239503825|ref|ZP_04663135.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB900]
 gi|301344638|ref|ZP_07225379.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB056]
 gi|301513416|ref|ZP_07238653.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB058]
 gi|301596387|ref|ZP_07241395.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB059]
 gi|332850155|ref|ZP_08432542.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332868969|ref|ZP_08438528.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
 gi|189029225|sp|A3M9Y0|MURC_ACIBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711854|sp|B7GV74|MURC_ACIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711855|sp|B7ICE4|MURC_ACIB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470258|sp|B2I1J4|MURC_ACIBC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470266|sp|B0V9F6|MURC_ACIBY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169147276|emb|CAM85135.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii AYE]
 gi|183211444|gb|ACC58842.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078672|gb|ABO13724.2| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii ATCC
           17978]
 gi|213058236|gb|ACJ43138.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|213988079|gb|ACJ58378.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|322509764|gb|ADX05218.1| murC [Acinetobacter baumannii 1656-2]
 gi|323519777|gb|ADX94158.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332731004|gb|EGJ62310.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332733012|gb|EGJ64214.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
          Length = 482

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 30/295 (10%)

Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GK  TT+     +A  ++  TY  IG   N  GV   L     +  F + E  
Sbjct: 125 IAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEAD 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            S   +  FL   ++P  A++T I   H+  + G  +++     +    L   G   +  
Sbjct: 180 ES---DASFL--YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD+    +  +   +G + + ++G +++ D +    +Q   +S   V  +G+  + +  +
Sbjct: 235 DDANIREILPR---VG-RPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTIN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342
             G H   N L  +G+ +      +   +AL  F    G G+R++      L +G   L+
Sbjct: 291 QPGLHNVLNALAAIGVATDEGVSDEAISRALKGF---SGVGRRFQVQGEFELGEGNVKLV 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           D+ Y  +P  ++A I    Q  P    RR+ +L            F  D  EVLS
Sbjct: 348 DD-YGHHPKEVEATIKAARQSHPD---RRLVMLFQPHRYSRTRDCFD-DFIEVLS 397


>gi|317504115|ref|ZP_07962117.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
 gi|315664787|gb|EFV04452.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
          Length = 443

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  +++ ++ ITGS GKTTT    T  +  I KT         +IG  L L 
Sbjct: 90  ISEIEFAGRY-TQSKMVCITGSNGKTTT----TSLIYHIFKTAGYDVGLAGNIGKSLALQ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + EL    L  +    +  R +IAV+  I P HL  +    E  A AK  I
Sbjct: 145 VAEDPHEYYVIELSSFQLDNM----YDFRANIAVLLNITPDHLDRYDFKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFF--ELLKAKSHAL 242
            +   +  +     DD     EL K ++ A 
Sbjct: 201 LQNQTQEDSFIYWNDDPVIQKELEKFETKAF 231


>gi|255010087|ref|ZP_05282213.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++     S        G+    IG  L L 
Sbjct: 90  ISEIEFAGRY-TDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGN----IGKSLALQ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               + D+ + EL    L  +    +  R  IAV+  I P HL  + 
Sbjct: 145 VAEEEHDYYVIELSSFQLDNM----YKFRADIAVLMNITPDHLDRYD 187


>gi|254465031|ref|ZP_05078442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
 gi|206685939|gb|EDZ46421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
          Length = 463

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  +L   L    +     G+          + R  +D+D    E G+
Sbjct: 122 VVAVTGSNGKSTTVALLHHILQEAGRESQLAGN----------IGRGVLDIDP-PGEGGV 170

Query: 170 SHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             L    + T L R   P +AV T ++P HL    G+    +AK  +F   ++T
Sbjct: 171 VVLELSSYQTELARALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEADRT 224


>gi|167626976|ref|YP_001677476.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189028990|sp|B0TW67|MURC_FRAP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167596977|gb|ABZ86975.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 452

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFEL 167
           IA+TG+ GKTTT  +L   L  +  T + +      +G  +  A   + +   D  + E 
Sbjct: 106 IAVTGTHGKTTTSSILATLLCKLDTTNSFV------VGGVVKYADSNIQINGTDRLVIEA 159

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   +  FL   + P++A++T I   H+S +    +        F   E    I+L  
Sbjct: 160 DES---DASFL--YLNPNVAIVTNIDLDHMSTYKNSYDNLLENFANFLMKESIENIYLCV 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L  K  +  +  I S+G + N+D ++  ++     +   V+ +    +     
Sbjct: 215 DDHGCNDLLDKYRSRVVGNIVSYGFAINSDARIYNYRVSDNLTTFTVEYKSGKYDFELQL 274

Query: 288 IGYHMAQN 295
            G +  QN
Sbjct: 275 PGKYNVQN 282


>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
 gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
          Length = 438

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 37/262 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           ++A ++AITGS GK+T    +T  +  + K          +IGVP LTL +   +    +
Sbjct: 103 NQAPVVAITGSNGKST----VTTLVGEMAKAAGWQVGVGGNIGVPALTLLKQ--ENQLVV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E  +     
Sbjct: 157 LELSSFQLE----TTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAK---VC 209

Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQG 278
            +N DD+    +  A S  +      SFG     D+ L K +    + W+ V+    L  
Sbjct: 210 VVNADDALTMPVRGADSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNT 259

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + M++     G H   N L  L +   +     +++KAL+ F    G   R++       
Sbjct: 260 REMKLS----GRHNYTNALAALALADAVGIPRSSSLKALTTF---TGLPHRFQLVFEHNG 312

Query: 339 FTLIDESYNANPASMKAAISVL 360
              I++S   N  S +AA+  L
Sbjct: 313 VRWINDSKATNVGSTEAALDGL 334


>gi|315636464|ref|ZP_07891706.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Arcobacter
           butzleri JV22]
 gi|315479245|gb|EFU69936.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Arcobacter
           butzleri JV22]
          Length = 392

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 31/147 (21%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I I+G+ GKTTT +M    L    + Y  I  Y  +IGVPL+     +D +  I+ L  S
Sbjct: 80  IWISGTNGKTTTTQMCQHLL----EKYDSI--YGGNIGVPLS----HLDENKKIWILETS 129

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE------------ 218
                   TH  +P+I ++  I   H++     EE   AK +  E +             
Sbjct: 130 SF--TLHYTHKAKPNIYILLPITEDHITWHGSFEEYKKAKLKPLELMNENDIAIIPNEFK 187

Query: 219 --KTGTIFLNYDDS-----FFELLKAK 238
             KT    + Y+DS     FF + K+K
Sbjct: 188 DVKTKAFVITYNDSDDLCGFFNIDKSK 214


>gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
 gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
          Length = 456

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E+    L  IR      +PHI+     +P HL     +E    AK  IFE     
Sbjct: 160 DWVVAEVSSFQLETIRDF----KPHISAFLNFSPDHLDRHLSVENYWKAKKRIFENQMSG 215

Query: 221 GTIFLNYDDSFFELLKA 237
               +NYDD  +++LKA
Sbjct: 216 DYALVNYDD--YKVLKA 230


>gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
 gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
          Length = 494

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 150/387 (38%), Gaps = 52/387 (13%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+ PQ  + G+++DSR +     F A+ G    G  F+   + +GA  ++ +T   A I 
Sbjct: 19  GMDPQ--ITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTDT-AGAEIA 75

Query: 80  SLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +I   G      +D   AL+  A          + A+TG+ GKT+    L +  + + 
Sbjct: 76  GEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLRMIWTELG 135

Query: 135 ------KTYACIGSYNNHIG----VPLTLAR-MPVDVDFGIFELGM---SHLGEIRFLTH 180
                  T    G++++ +      P+TL R +    + G+    M   SH  + R L  
Sbjct: 136 HQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRRLDG 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V+   A  T     HL      E   +AKA +F   L + G   +N  D     ++A +
Sbjct: 196 -VQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGAKMRAIA 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGY 290
            A G + I + G+    D  L           M V   G+ +    H          IG 
Sbjct: 255 AARG-QEIITVGRGLG-DIALMG---------MRVDATGQDIRFTWHDRPFAKRLNLIGG 303

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNAN 349
             A+N+L+  G+      D       L   H    RG+    A  + G    +D  Y   
Sbjct: 304 FQAENVLVAAGLAIASGEDPVQVFDTLP--HLSTVRGRMELAATRENGATVFVD--YAHT 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P ++  AI  L    PH  GR +A++G
Sbjct: 360 PDAIATAIKAL---RPHVLGRLVAIVG 383


>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
 gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
          Length = 449

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 36/223 (16%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQK--GAGLVVVN 71
           GI P      + +DSR   P     A++ P  +    G D  +++ A Q     G+ +  
Sbjct: 27  GITP------LVMDSREQPPGAKQLALEFPEVNLITGGFDCRYLVQASQIVISPGIALDT 80

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++ A+I  + I V G  DV     +L   A   S + +I ITGS GK+T   ++     
Sbjct: 81  PEIRAAI-DMDIEVIG--DV-----ELFARAVKNSSSCVIGITGSNGKSTVTTLVGEMAK 132

Query: 132 SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +    YA  G    +IG+P L L + P  +D  I EL    L      TH +    A   
Sbjct: 133 AAGLNYAVGG----NIGIPVLDLLQSP--IDLYILELSSFQL----ETTHSLNCIAATCL 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I+  H+  +  +E    AK  ++   +++     N +DS  +
Sbjct: 183 NISEDHMDRYRDLEAYRQAKLSLY---DQSKRALFNREDSLTQ 222


>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 110/277 (39%), Gaps = 41/277 (14%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V+G +   A A        ++ ITG+ GK+TT    T+ +  I            +IG+P
Sbjct: 92  VIGDIELFAQARADLPPHRVVGITGTNGKSTT----TMLVHHICAAAGLPARLGGNIGLP 147

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L + P+  + G++ L +S   +I  LT  +   +A +  ++P HL  + G    A++K
Sbjct: 148 I-LGQEPLP-EGGVYVLELSSY-QID-LTQSLACDVAALINLSPDHLDRYDGFAGYAASK 203

Query: 211 AEIFEGLEKTG--TIFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWKQC 266
           A +F  +++     +F   D+   E+ +  S  H  G   +                   
Sbjct: 204 ARLF-AMQRADQHAVFGCGDEHTLEIAREASATHDTGFVHVV------------------ 244

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S +  QL+  S++      G H  QN  + + I   L    D    AL+ F    G 
Sbjct: 245 -QPSALHGQLEWPSLQ------GPHNLQNAAIAVEIARQLGIAEDIWRSALASF---VGL 294

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             R            +++S   NPAS   A+    +I
Sbjct: 295 PHRMERVAEANGVLFVNDSKATNPASTAPALGAYPRI 331


>gi|331003528|ref|ZP_08327025.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330412369|gb|EGG91760.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 458

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 32/264 (12%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI+G+ GKTTT  ML+ I L S +     +G           L ++  ++  G  ++ +
Sbjct: 114 IAISGTHGKTTTTSMLSYILLDSGQDPTISVGG---------VLKKIKGNIHIGSGDVFV 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN--- 226
           +   E       + P I VI  I   HL  F  I+EI ++  +        G I +N   
Sbjct: 165 TEACEYTNSFLSLNPTIGVILNIEEDHLDFFKDIDEIRNSFKKFVTNTSDEGCIIINDKI 224

Query: 227 -YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEV 283
             ++   E  K K        +  +G S+N+D  +   +   E  +    L  +G + + 
Sbjct: 225 ENNEEITENFKGK--------VVRYG-SENSDCFVNNIRY-DELGYPTFDLIYKGSTYKD 274

Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V   + G H   N L ++ +   L   ++     L  F    G  +R+      G  T++
Sbjct: 275 VKLCVGGNHNIDNALASICVAFELGVGIEDIKNGLLEF---SGADRRFEIKGKMGNITIV 331

Query: 343 DESYNANPASMKAAISVLSQISPH 366
           D+ Y  +P+ + A +++  +  PH
Sbjct: 332 DD-YAHHPSEIAATLNIAKRY-PH 353


>gi|255533212|ref|YP_003093584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
 gi|255346196|gb|ACU05522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
          Length = 447

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           ++  I S +IPV         L+++  A R  +KA  I ITGS GKTTT  MLT  +  +
Sbjct: 80  IIKEIRSRNIPV---------LSEIEFAKRY-TKAKTICITGSNGKTTTT-MLTYHI--L 126

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K     +G   N IG          D D+ + E+    L ++    +  +  IAV+  I 
Sbjct: 127 KNAGLNVGLAGN-IGHSFAAQVASADFDWYVLEISSFMLDDM----YDFKADIAVLLNIT 181

Query: 194 PAHLSNFS 201
           P HL  + 
Sbjct: 182 PDHLDRYD 189


>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
 gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A ++ ITGS GKTTT  ++     S        G+  N + + +   +     D+ I 
Sbjct: 100 TDAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQVATEKH----DYYII 155

Query: 166 ELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFS 201
           EL    L  + RF     R +IAV+  I P HL  + 
Sbjct: 156 ELSSFQLDNMYRF-----RANIAVLMNITPDHLDRYD 187


>gi|295706761|ref|YP_003599836.1| folylpolyglutamate synthase [Bacillus megaterium DSM 319]
 gi|294804420|gb|ADF41486.1| folylpolyglutamate synthase [Bacillus megaterium DSM 319]
          Length = 432

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 32/223 (14%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLE 218
           VD+ +FE G   LG     T++V P ++VIT I   H++     +EEIA+ KA I +   
Sbjct: 139 VDYAVFETG---LGGRYDSTNVVSPMVSVITNIGFDHMAILGDTVEEIAAEKAGIIKKEV 195

Query: 219 K--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQ 275
              TG   +   D   E   +K   L     +  GK    +F++  ++  +  + +M   
Sbjct: 196 PIITGAEQVKALDVITEEANSKQAPL-----FVLGK----EFKIENYEPLANGEGFMLKT 246

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332
             G    +  + +GYH  +N  + +  V  L        K LS+F  +  +G ++     
Sbjct: 247 PYGTFEHLQLNMLGYHQVKNAALAVMAVCYLKEK-----KKLSIFKEQMIKGIQHTKWNG 301

Query: 333 ---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +N+   T+ID ++NA     +   S+LS +  H E R I
Sbjct: 302 RFEIVNEHPLTIIDGAHNA-----EGIDSLLSTLRLHYEDRNI 339


>gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Janthinobacterium sp. Marseille]
 gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)

Query: 35  RSIAPQEAFFAIKGPH----YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           R IAPQ  F  + GP      DG DF+  AV  G        +++ +     IPV+G  +
Sbjct: 47  RGIAPQAEF--VGGPFDASLLDGVDFV--AVSPGLMPARELAEIIPAAAEKEIPVWGEIE 102

Query: 91  VLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +       A+AA    K     +IAITG+ GKTT   ++ +       T    G+ +   
Sbjct: 103 LFAQ----ALAALKEDKGYAPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNIS--- 155

Query: 148 GVPLTLARM-PVDVDFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             P  L ++  V  D  + ++ +  L   +   T+ ++  +A +  +   HL     +  
Sbjct: 156 --PAALDKLHQVLTDDQLPQVWVLELSSFQLHTTYSLQADVATVLNLTQDHLDWHGDMAA 213

Query: 206 IASAKAEIFEGLEKTGTI-FLNYDDSF 231
            A  KA IF     + TI  LN DD+ 
Sbjct: 214 YADDKARIF----GSNTIRVLNRDDAL 236


>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
          ligase [Yersinia kristensenii ATCC 33638]
 gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
          ligase [Yersinia kristensenii ATCC 33638]
          Length = 471

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
          +++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D VA   S+     +PV
Sbjct: 1  MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60

Query: 86 FGVDDVLGALNKLA 99
            + D+   L+ LA
Sbjct: 61 IYLRDLNQHLSNLA 74


>gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 455

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 137/364 (37%), Gaps = 38/364 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLAR 155
           LA   RLR   T IAI G+ GKTTT   LT A+     T     IG   N  G    L  
Sbjct: 99  LAELMRLR---TGIAIAGTHGKTTTTS-LTAAIFDEAGTDPTVIIGGRLNAYGANARLGD 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                  G + +  +   +  FL     P + V+T +   H+ ++   + I  A  +   
Sbjct: 155 -------GAYLIAEADESDGSFLCLF--PIVTVVTNVDMDHMDHYPSQQAIDDAFVDFMN 205

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G   +  DD     L  +     +   Y FG+      ++     C++ S   V 
Sbjct: 206 KVPFYGMNVVCGDDPGVRRLLPRVKRPVV--TYGFGEGNAIRAEVLA---CADSSLFNVI 260

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + G  + +V     G H   N L  +G+        +  +  L+ F    G G+R+    
Sbjct: 261 VNGDDIGQVRLAQPGRHNILNALAAIGVALECDIAPEKIVAGLAKFG---GVGRRFERKG 317

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQS 387
            +    ++D+ Y  +PA + A ++   Q  PH   RR+ V+             GE  + 
Sbjct: 318 ERDGVLVVDD-YGHHPAEIAATLATARQCFPH---RRLVVVFQPHRFSRTQALFGEFCKV 373

Query: 388 FH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG 444
           F  +D   +  +Y  S   + G    +L   + +     V Y +  D +   +   L  G
Sbjct: 374 FDGVDKLLLTEIYPASEKPIPGVSGQSLAQGIRQVSKTDVTYHQDFDSVLAALPEVLQPG 433

Query: 445 DVVV 448
           D+++
Sbjct: 434 DLLL 437


>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS GKTTT  ++     S        G+    IG  L L       D+ I 
Sbjct: 100 TNAKMICITGSNGKTTTTSLIYHIFKSAGMNVGLAGN----IGKSLALQVAEDHHDYYII 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 156 ELSSFQLDNM----YNFRANIAVLMNITPDHLDRYD 187


>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|237724907|ref|ZP_04555388.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D4]
 gi|212664599|gb|EEB25171.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
           5_1_36/D4]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++       KK    +G   N IG  L   
Sbjct: 91  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLI---YHIFKKAGMNVGLAGN-IGQSLAYQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I
Sbjct: 146 VAEYNYDYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254
            +            DD    +++ + H  GI    Y F + K
Sbjct: 202 IQNQTPDDAFIFWNDDP---VIQRELHKYGIHGHYYPFAERK 240


>gi|332704503|ref|ZP_08424591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 435

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLT-IALSSI 133
           S  +PV  +  +LG + +  V + L   +      I+A+TG+ GKTTT  +   I   S 
Sbjct: 80  SPGVPVRKMGHLLGDMPERKVVSELELASWFVSEPILAVTGTNGKTTTVSLCGHILRESG 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           K+ +        +IG PL+   +  +  D  + E+    L   R      +PH+ V+   
Sbjct: 140 KRVFV-----GGNIGTPLSEYLLGGERADILVLEVSSFQLQNCRTF----KPHVGVLLNF 190

Query: 193 APAHLSNFSGIEEIASAKAEIF 214
           +  HL     +EE   AK ++F
Sbjct: 191 SANHLDYHESMEEYLEAKLKLF 212


>gi|309388991|gb|ADO76871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium
           praevalens DSM 2228]
          Length = 449

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVP-LTLARMPVDVDF 162
           +S+A IIAITG+ GKTTT EML   L+ ++ +     G    +IG+P ++L     + + 
Sbjct: 105 QSQAEIIAITGTNGKTTTTEMLAAMLADLEAENIKAAG----NIGIPFISLIDQLKEKER 160

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L  ++      +  IA+    +P HL      +   +AKA IF+  + +  
Sbjct: 161 VILELSSFQLEAVKDF----KAKIALYLNYSPDHLDRHQTEKNYQAAKANIFKNQQPSDF 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
             ++ DD +   LK K  A   K +    K++ AD 
Sbjct: 217 AIIDLDDPYLSELKNKLEA---KVLTISAKNEKADL 249


>gi|115524118|ref|YP_781029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisA53]
 gi|115518065|gb|ABJ06049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisA53]
          Length = 482

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 103 RLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           RLR   +A  +AITG+ GK+TT    T  ++ + +          +IG  +   + P + 
Sbjct: 119 RLRHAPEAPFVAITGTNGKSTT----TALIAHLMRQAGYDTQMGGNIGTAILSLQPPQNG 174

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G+   
Sbjct: 175 RVHVIEMSSYQID----LTPSLDPSVGIMLNVTEDHIDRHGSIENYAAVKERLVAGVLPQ 230

Query: 221 GTIFLNYDDSF 231
           G   +  DD F
Sbjct: 231 GCAIIGVDDGF 241


>gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 448

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  +V+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDEVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  ++G+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 448

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA +IAITGS  K+T   ++    ++  K  A  G    ++G P  L  +  +V+  + 
Sbjct: 107 AKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGG----NLGTP-ALDLLSDEVELYVM 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  ++G+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLET----TDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSF 231
           N  D+ 
Sbjct: 215 NRQDAL 220


>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium atrosepticum SCRI1043]
 gi|60390382|sp|Q6D0I1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 438

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 187/461 (40%), Gaps = 71/461 (15%)

Query: 15  QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV--- 68
           QG  + I+  G      +D   +R + P+     I  P   G D +   V++  G +   
Sbjct: 5   QGKKVVIIGLGLTGLSCVDFFLARGVVPRVVDTRISPP---GLDKLPEQVERHLGSLNED 61

Query: 69  -VVNTDM-VASIG-SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +++ D+ VAS G +L+ P+     D  +  +  + +  R  ++A I+AITGS GK+T  
Sbjct: 62  WLMSADLIVASPGVALATPILCDAADAGIEIVGDIELFCR-EAQAPIVAITGSNGKST-- 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  +  + +          +IG+P L L   P      + EL    L      T  +
Sbjct: 119 --VTTLVGEMARAAGWQVGVGGNIGLPALQLLEHP--AQLYVLELSSFQLE----TTTSL 170

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---AK 238
               A I  +   H + +  G+++  +AK  I+   E      +N DD+    ++   A+
Sbjct: 171 HAAAATILNVTEDHTNRYPFGLQQYRAAKLHIY---EHADLCVVNADDALTMPVRGADAR 227

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294
             + G+            D+ L + +    ++W+ V     L  + +++V    G H   
Sbjct: 228 CRSFGVDV---------GDYHLNRQQG---ETWLRVDGERVLNTREIKLV----GQHNYT 271

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +   +     +A+ AL+ F    G   R++ A  +     I++S   N  S +
Sbjct: 272 NALAALALADAVKIPRASALTALTSF---TGLPHRFQMAFERNGVRWINDSKATNVGSTE 328

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+S L+      +G    +LG   +  + S        E + LY        G  + AL
Sbjct: 329 AALSGLAV-----DGTLHLLLGGDGKSADFSPLVPYLQGERIRLYCFGR---DGQQLAAL 380

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  +        +ETM+     I   +  GD+V++  S +C
Sbjct: 381 RPEI-----AEQTETMEQAMRVIAERIRPGDMVLL--SPAC 414


>gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf.
           saccharolyticum K10]
          Length = 487

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 145/367 (39%), Gaps = 42/367 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR       F  +KG + D HDFI   ++ G  ++VV  + V+ I    + V  V++  
Sbjct: 28  DSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVVERE-VSEIPE-DVTVIRVENGR 85

Query: 93  GALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            AL  L+ AAR      K   I +TG+ GKTTT  M+   L +  K    IG+    IG 
Sbjct: 86  NALALLS-AARFGYPAGKMVTIGVTGTKGKTTTTYMIKSILEACGKKVGLIGTNGAVIGD 144

Query: 150 PLTLARMPVDVDFGI-----------FELGMSHLGEIRFLTHLVRP---HIAVITTIAPA 195
                +      + +            E  +  +    +L H V        +   I+  
Sbjct: 145 KHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEVSSQSYLMHRVDGLTFDYGLFLNISND 204

Query: 196 HL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           H+     +  EE    K ++   L+   T  +N DD  FE +   + A     I++F   
Sbjct: 205 HIGPGEHADFEEYLHYKKQL---LKNCKTAIVNEDDEHFEEIIRGAQA----KIHTFSLE 257

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           + ADF+    +  S   ++ +  Q      MEV  +  G   A N L ++ + S L  D+
Sbjct: 258 RPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNVPGRFNAANALASVALCSFL--DL 315

Query: 311 DTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             A  A  + H K +G   R          T+I + Y  N  SM++ +  L    P    
Sbjct: 316 PKAKVAHGLEHLKIDG---RMEIVYKSSKMTVIVD-YAHNAVSMESLLKTLRDYKPK--- 368

Query: 370 RRIAVLG 376
           R + V G
Sbjct: 369 RLVCVFG 375


>gi|291534965|emb|CBL08077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 401

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD-FGI 164
           +  +I ITG+ GK+TT  ML   L +   +    +G+    IG P       V  D   +
Sbjct: 86  RDQVIGITGTKGKSTTSAMLYTVLKACSSRPVLLLGN----IGQPCLDYFEEVTEDTIIV 141

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +E+    L         V PHIA+   +   HL  +  +E+   AK+ I    +K+G  F
Sbjct: 142 YEMSCHQLAHTN-----VSPHIAIFLNLYEEHLDYYGTVEKYFEAKSHI-AAYQKSGDYF 195

Query: 225 L 225
            
Sbjct: 196 F 196


>gi|19704788|ref|NP_604350.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|25008802|sp|Q8RDQ2|MURC_FUSNN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19715125|gb|AAL95649.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 468

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 131/326 (40%), Gaps = 36/326 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KGA  V+ +T +  S   LS   +  ++ +  L +  + A+L ++ T 
Sbjct: 58  YNEHD---EENVKGADYVIASTAIKESNPELS---YAKNNGIEILKRGELLAKLLNRETG 111

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ML+  + S   T    G           L  +  +   G  E  ++
Sbjct: 112 IAVAGTHGKTTTSSMLSAVMLSKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P  AVIT I   HL     ++ I  +  +     +K   I L+ ++ 
Sbjct: 162 EADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIKFICHTQKEAIICLDCEN- 220

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
              L +  +     KT+ ++  K ++A+   +  K    ++  E+ +  + +      I 
Sbjct: 221 ---LKEVVTRLPEEKTVTTYSIKDESANIFAKNIKIEDRKTIFELYINKELIGEFSLNIP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF------ 338
           G H  QN L  + +        +   +AL+ F   +G  +RY       L  G+      
Sbjct: 278 GEHNIQNSLPVIYLAFKFGVSKEEIQEALNKF---KGSKRRYDVLFDKELENGYGNKTKR 334

Query: 339 FTLIDESYNANPASMKAAISVLSQIS 364
             ++D+ Y  +P  +KA +  +  I 
Sbjct: 335 VRIVDD-YAHHPTEIKATLKAIKSID 359


>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
 gi|189438327|gb|EDV07312.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++     S        G    +IG  L L 
Sbjct: 90  ISEIEFAGRY-TNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAG----NIGKSLALQ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 D+ + EL    L  +    +  R +IAV+  I P HL  + 
Sbjct: 145 VATDQHDYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYD 187


>gi|145588855|ref|YP_001155452.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047261|gb|ABP33888.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 856

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 41/374 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YNNHIGVPLTLARMP--------- 157
           ++A+TG+ GKTTT  +++  L+         G+   Y NH  +       P         
Sbjct: 472 VVAVTGTNGKTTTVRLISHLLTETGLRVGMTGTDGVYINHRAIDTGDCSGPKSARNVLMH 531

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH---LSNFSGIEEIASAKAEIF 214
            DVD  + E     L  +R      R  +AV+T I       L+  + +E++A  K  I 
Sbjct: 532 PDVDAAVLETARGGL--LREGLGFDRCEVAVVTNIGEGDHLGLNYITSVEDLAILKRVIV 589

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGI-------KTIYSFGKSKNAD--FQLRKWKQ 265
           + +  TG   LN  D     +  K     I         + +  ++KN    +    +  
Sbjct: 590 QNVAPTGAAVLNAADPMVAKMGDKCSGRVIFFAQNQHHPVITAHRAKNKKVIYNDGTYIV 649

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-- 323
            S+ S +  +     + +  +G+     +N +  +G    L  D +   + L+ F     
Sbjct: 650 ASKGSRVMYRFPVSEIPLTQNGVLGFQVENAMAAIGAAWALGLDAEKIARGLNSFESTAN 709

Query: 324 --EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC-- 379
              GR  +++   + G   + D  Y  NP +M+A  S ++ + P      I+  GD    
Sbjct: 710 SVPGRFNQFQ---HNGATVIAD--YGHNPDAMRALASAITAMKPKQSHVVISGAGDRRDE 764

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQ 438
           ++ +L++        ++   +          VL  L++ L  +      + + G FL I 
Sbjct: 765 DIRDLTRILGNSFDNIILYQDACQRGREDGEVLKLLQEGLVGATKAKQVKEIHGEFLAID 824

Query: 439 SSLVD---GDVVVV 449
           ++L D   GD+ ++
Sbjct: 825 TALNDISAGDICLI 838


>gi|325954316|ref|YP_004237976.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436934|gb|ADX67398.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
          Length = 446

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 47/265 (17%)

Query: 111 IAITGSVGKTTTKEML--TIALSSIKKTYACIG--SYNNHIGVPLTLARMPV-DVDFGIF 165
           I + G+ GKTTT  +L   +  + +K T A +G  + N H  + L    + V + D    
Sbjct: 114 IGVAGTHGKTTTSSILGHVLKFAEVKST-AFLGGVAENYHSSIILNGGEVTVAEAD---- 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF- 224
           E   S L         + P +A+IT+I   HL  +   +E+  +  E  + +E+   +  
Sbjct: 169 EFDRSFLR--------LSPKLAIITSIDADHLDIYGERKEVEKSFHEFGQLVEEKLFVRK 220

Query: 225 -LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN+ +S                  ++G  + AD+  +  +        +VQ   K +  
Sbjct: 221 GLNFSNSL-----------------TYGVEEEADYVAKNVRIEDGHYVFDVQTPTKEIHN 263

Query: 284 VHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           V  GI   G H  +N L  L +   +  D    I+AL+ F   + R  R+          
Sbjct: 264 V--GILLPGRHNMENALAALAVADYMGIDEKKIIEALAEFKGVKRRFNRFEYTDK----I 317

Query: 341 LIDESYNANPASMKAAISVLSQISP 365
            ID+ Y  +P  +KA I  + ++ P
Sbjct: 318 YIDD-YAHHPNELKAVIESVRELYP 341


>gi|152976274|ref|YP_001375791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189082871|sp|A7GRN8|MURD_BACCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152025026|gb|ABS22796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 451

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 21/231 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           N I  D + +A  E    ++    D    GH   L  +++   LVV N  +  S   L  
Sbjct: 34  NVIVNDGKPLANNELAAELQAKGMDVVCGGHP--LELLERNIALVVKNPGIPYSNPLL-- 89

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V   +  +  + ++ +A R+ S+A  I ITGS GKTTT  MLT  +    + +  I   
Sbjct: 90  -VAATEKQIPIITEIELAYRI-SEAPFIGITGSNGKTTTT-MLTFEMLKEGEKHPAIAG- 145

Query: 144 NNHIG-VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             +IG V   +A+     +  + EL    L  +       +P IA    +  AHL     
Sbjct: 146 --NIGTVACEVAQAAKANEVLVTELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGT 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +E   AKA IF+         +N DD+  ++++  +++ G K ++S  K 
Sbjct: 200 KKEYGLAKANIFKNQTAADYSVINADDA--DVMELSANSKGQKILFSTTKE 248


>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
 gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
          Length = 462

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +GA LVV++  +   + +L+ +   GV      + +L +A+R  + A ++A+TG+ GK+T
Sbjct: 67  EGADLVVISPGVPTHLDALNRVRARGVR----VIGELELASRFLT-APVVAVTGTNGKST 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM---------PVDVDFGIFELGMSHL 172
           T  ++   L    K  A +G    ++G+  + A +             ++ + E+    L
Sbjct: 122 TVTLIGKFLQESGK-RAFVG---GNLGIAASEAALTSVQAKAGSAAPYEYVVLEVSSFQL 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                 T    P IA I  +   H+  ++ +E+  +AKA IF           N DD+  
Sbjct: 178 ----ETTEQFHPWIAAILNVTLDHMDRYASVEDYVAAKATIFANQTAGDYSLFNLDDARV 233

Query: 233 ELLKAKSHALGIKTIYSFGKS 253
             L+ ++      T+  F +S
Sbjct: 234 AALRGRTKG----TVLGFSRS 250


>gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
 gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
          Length = 517

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF--------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           T H+LL      +I      F        +  ++ DSR + P  + F  KG  +    ++
Sbjct: 2   TLHELLALFTSKNIEYTTAHFDAVDQNAQLTDVASDSREVIPG-SLFVCKGASFSPA-YL 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLA--VAARLRSKATIIAI 113
             AV+ GA   +    +   + +++  +    VDDV  A+  +A  VA     K T I I
Sbjct: 60  TSAVKAGAVAYLCQRSLAEELQAVAPNVAAIHVDDVRFAMAYVAAGVAGHPDKKLTTIGI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYAC 139
           TG+ GK+T   ML   L   +    C
Sbjct: 120 TGTKGKSTCSYMLRAILDGDEPYSKC 145


>gi|78356087|ref|YP_387536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|122063243|sp|Q313Q5|MURD_DESDG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78218492|gb|ABB37841.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 447

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           H+ ++ AG  ++       + SL +P          + ++ +AAR  + + ++A+TG+ G
Sbjct: 76  HSAEQFAGADILVPSPGVPVASL-LPYLDASRPPEIMAEIDLAARCVT-SPVLAVTGTSG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-----LARMPVDVDFGIFELGMSHLG 173
           KTTT  +    L +  K     G    +IG PL+     +A      D  + E+    L 
Sbjct: 134 KTTTVSLCAAMLRAAGKRVFLGG----NIGTPLSEYVLDVAAGEAPADVLVLEVSSFQLQ 189

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               L    RP +AV+  I+  HL   + ++E   AK  +F
Sbjct: 190 TCTTL----RPEVAVLINISANHLDYHADMQEYLDAKFRLF 226


>gi|16078584|ref|NP_389403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309394|ref|ZP_03591241.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313719|ref|ZP_03595524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318643|ref|ZP_03599937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322916|ref|ZP_03604210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|417327|sp|Q03522|MURD_BACSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|580932|emb|CAA78769.1| murD [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633891|emb|CAB13393.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484071|dbj|BAI85146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 451

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+    IG   +      D D    
Sbjct: 111 TSAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGN----IGTVASEVAYHADGD---- 162

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E  ++ L   + + TH  RP I++I  +  AHL      E    AK +++     +    
Sbjct: 163 EWIVTELSSFQLMGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAI 222

Query: 225 LNYDDS 230
           +N DD 
Sbjct: 223 VNQDDE 228


>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
          harbinense YUAN-3]
 gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
          harbinense YUAN-3]
          Length = 484

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 7  FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
            +LL+ +  ++ G +P+  + GI+ DSR   P   F  I G   DGHDF
Sbjct: 3  LQNLLRDVS-YTGGALPEFEITGITADSRKAGPGVVFVCIPGERADGHDF 51


>gi|257454325|ref|ZP_05619588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
 gi|257448228|gb|EEV23208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
          Length = 486

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 126/299 (42%), Gaps = 42/299 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
           IIAITGS  K+T   + T+    +K     +G   N +G P L L   P+ +   + EL 
Sbjct: 134 IIAITGSNAKST---VTTLVGEMVKNAGFKVGVGGN-LGTPALDLLLEPIQM--AVLELS 187

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   +  T+L    +A +  ++P HL     +     AK  IF+G++   +I +N +
Sbjct: 188 SFQL---QTTTNLAA-KVATVLNMSPDHLDRHGNMLGYHQAKHRIFQGVQ---SIVVNRE 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQGKSMEVV 284
           D     L A      + TI SFG +     Q    K    + W+    E  L  K + + 
Sbjct: 241 DLLSRPLVADD----MPTI-SFGSNAPDMNQYGLIKDSDGKIWLARGRERLLNEKDVPIK 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL--I 342
               G H   N L  L I  +    +++ +  L  F      G  +RC        L   
Sbjct: 296 ----GEHNLMNALSALAIGELAGLPLESMLTTLKNF-----VGLPHRCEFITTTHQLDCF 346

Query: 343 DESYNANPASMKAAISVLSQI-SPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           D+S   N  S  AAI  L ++ +P  +G+++AV+    G      EL++   +D A+V+
Sbjct: 347 DDSKGTNIGSTIAAILGLGKVYAP--KGKKLAVILGGQGKGQNFAELAKPL-MDYAQVV 402


>gi|148643250|ref|YP_001273763.1| UDP-N-acetylmuramate-alanine ligase [Methanobrevibacter smithii
           ATCC 35061]
 gi|148552267|gb|ABQ87395.1| cell wall biosynthesis protein, UDP-N-acetylmuramate-alanine ligase
           family [Methanobrevibacter smithii ATCC 35061]
          Length = 511

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 20/179 (11%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           +P+  +R+  DV  GI E+G   + G I  +         +IT I P HL++  G  E A
Sbjct: 157 IPILQSRLNGDV--GILEVGTFGVPGTIERIVGNSELTSGLITNITPDHLNDLGGFMEYA 214

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             KAE  +GL     I    D +   LL+  + A     I +FG  +       K   C 
Sbjct: 215 HVKAEFIKGLAGKQLIVNGQDPTIMGLLRELNFA---GEIITFGVDEMPVGVASKECVC- 270

Query: 268 EQSWMEVQLQGKSMEV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                     GK+++V  +  G GY++ +  L T  +  I T +++   +   +  P+E
Sbjct: 271 ----------GKTIDVKEIISGSGYYLCECGLTTPQLDYIAT-NINLKNRTFELHTPEE 318


>gi|255659950|ref|ZP_05405359.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
 gi|260847824|gb|EEX67831.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
          Length = 466

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 21/190 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A +  + P H+     +E   + K  +F    +   + LNYDD     +KA++    
Sbjct: 182 PHVAAVLNVTPDHIVRHGSMEVYQAMKERLFREETEDDYLVLNYDDEKTRGMKART---- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH---GI-GYHMAQNMLMT 299
           +  +  F + +  +  +   +   +   + ++ QG+  E+ H    GI G H  +N L  
Sbjct: 238 VAQVCYFSRREELEEGVF-VRGDVKNGLIVIRWQGQEYELCHTDELGIKGPHNVENALAA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNANPAS-MKAA 356
           + +      +    +  L  F     RG  +R      + T ID    YN + A+   +A
Sbjct: 297 IAVAFFAGCEPTLMVPVLKSF-----RGVEHRIE----YVTTIDGVPYYNDSKATNTDSA 347

Query: 357 ISVLSQISPH 366
           I  L     H
Sbjct: 348 IKALETFDGH 357


>gi|262280678|ref|ZP_06058461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257578|gb|EEY76313.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 455

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 46/287 (16%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  ++  I+AITGS  K+T   ++ +      K  A  G    ++G P  L  +    + 
Sbjct: 107 RRATEVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGG----NLGRP-ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      +HL    +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 162 LVLELSSFQL---ETTSHL-NAEVAVVLNMSEDHLDRHGDMWGYHQAKHRIFQGVKK--- 214

Query: 223 IFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  N DD+    L       +S  L    +  +G  ++ D  L          W+   LQ
Sbjct: 215 VIFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGTL----------WLARGLQ 264

Query: 278 G--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              KS ++   G+  H   N L  L +   +   +++ ++ L  F      G  +RC   
Sbjct: 265 RLIKSSDLYIQGM--HNVANALACLALGEAIGLPMESMLETLKQF-----TGLEHRCE-- 315

Query: 336 QGFFTLID------ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             F   +D      +S   N  +  AAI  L       +G+   +LG
Sbjct: 316 --FVKTVDDVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALILG 360


>gi|167629358|ref|YP_001679857.1| udp-n-acetylmuramyl tripeptide synthetase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592098|gb|ABZ83846.1| udp-n-acetylmuramyl tripeptide synthetase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 467

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARM 156
           A+AA+L+  A +I  TG+ GKTTT +ML   IA S +  T+   G+  N +G  +T A +
Sbjct: 46  ALAAQLKRGAMVI--TGTNGKTTTSKMLAEMIAASKLTLTHNRAGA--NLVGG-ITAAFI 100

Query: 157 P-------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                   +  D G+ E+  + + +   L   VRP   V+T      L  F  +++  + 
Sbjct: 101 ESASIGGSIASDLGVIEVDEATIPQ---LVREVRPRGVVVTNFFRDQLDRFGELDKTVTL 157

Query: 210 KAEIFEGLEKTGTIFLNYDDSF 231
             E    L       LN DD  
Sbjct: 158 VEEALALLPPQSVAILNADDPL 179


>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
 gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
          Length = 487

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
          DSR +     F  I G   DGH ++    +KGA  V+V  D+ A  G   I V
Sbjct: 29 DSRKVTEGSVFVCISGAVSDGHAYVQQVAEKGAAAVIVEKDVEAPEGLTVIKV 81


>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           entomophila L48]
 gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           entomophila L48]
          Length = 448

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIAI+GS  K+T   ++    +   K  A  G    ++G P  L  +   V+  + 
Sbjct: 107 AKAPIIAISGSNAKSTVTTLVGEMAAQAGKRVAVGG----NLGTP-ALDLLDDSVELYVL 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + +
Sbjct: 162 ELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG 251
           N  D+    L  +      +  +SFG
Sbjct: 215 NRQDALSRPLPVEG-----RPSWSFG 235


>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
 gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
          Length = 445

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  MLT  +  +K+    +G   N +G  L L 
Sbjct: 91  ISEIEFAGRY-TDSKMICITGSNGKTTTT-MLTYHI--LKEAGVDVGLAGN-VGNSLALQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                    + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I
Sbjct: 146 VAEDPHAVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +   K        DD       AK H     T+Y F ++
Sbjct: 202 LQNQTKDDAFIFWNDDPIIAREIAKRHPKA--TLYPFAET 239


>gi|254515240|ref|ZP_05127301.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium NOR5-3]
 gi|219677483|gb|EED33848.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium NOR5-3]
          Length = 460

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 28/273 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ++    ++        IG   N  G    L         G + +  
Sbjct: 104 IAVAGTHGKTTTTSLIAALFAAADLDPTFVIGGRVNSTGTHAQLG-------AGRYLIAE 156

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
           +   +  FL HL +P + V+T I   H+  + G   ++     E    L   G   L  D
Sbjct: 157 ADESDASFL-HL-QPMVTVVTNIEADHMETYGGDFAQLRRTFVEFLHNLPFYGLAVLCID 214

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHH 286
           D+   +L      LG + + S+G S++AD+++   +    ++   V+      ++ +  +
Sbjct: 215 DA---VLAGLGEDLG-RPMLSYGFSESADYRITGLEPAGLRTRFVVERPDGYPALPITLN 270

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342
             G H   N    + + +    D     + L  F    G G+R+       L Q   TL+
Sbjct: 271 MPGNHNVLNATAAVAVATDQGIDDQVIQETLERF---SGVGRRFSVYEGVKLGQQVVTLV 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           D+ Y  +P  + A ++   Q  P    RRI ++
Sbjct: 328 DD-YGHHPTEVAATLASARQAWPE---RRIVMV 356


>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
 gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
          Length = 454

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           LT  ++   AVI  + P HL     +E    AK  IF   +K     LNYDDS
Sbjct: 174 LTSSLKAKSAVILNLTPDHLDRHHTMEAYGEAKKRIFLNQDKNDYAILNYDDS 226


>gi|308173485|ref|YP_003920190.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606349|emb|CBI42720.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 106 SKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           + A  I ITGS GKTTT  ++   +   SIK   A       +IG   +      D D  
Sbjct: 111 TNAKFIGITGSNGKTTTTTLIYEMLKADSIKTLIA------GNIGTVASEVAYHADGD-- 162

Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             E  ++ L   + + TH  RP I +I  +  AHL      E    AK +++    ++ T
Sbjct: 163 --EWIVTELSSFQLMGTHAFRPEIGLILNVFDAHLDYHHSRENYEKAKQKVYLHQLESDT 220

Query: 223 IFLNYDDS 230
             +N +D 
Sbjct: 221 AIVNQNDE 228


>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
 gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
          Length = 443

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 25/184 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV  I   SIP+         ++++  A R  + A ++ ITGS GKTTT  ++       
Sbjct: 78  MVRKIIDKSIPI---------ISEIEFAGRY-THAKMVCITGSNGKTTTTSLIYHIFREA 127

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                  G+  N +   L +A  P    F I EL    L ++       R +IA++  I 
Sbjct: 128 GYDVGLAGNIGNSLA--LQVAEDP--HAFYIIELSSFQLDDM----FDFRANIAILLNIT 179

Query: 194 PAHLSNFS-GIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSF 250
           P HL  +   ++   +AK  I +   E+   IF N D     ++K +     IK + Y F
Sbjct: 180 PDHLDRYDHCMQNYVNAKMRILQNQTEEDSFIFWNDD----PIIKRELQKYDIKAMQYPF 235

Query: 251 GKSK 254
            + K
Sbjct: 236 SELK 239


>gi|238898847|ref|YP_002924529.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466607|gb|ACQ68381.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 445

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 140/355 (39%), Gaps = 46/355 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+T   ++T     + +T     S   +IG+P  L  +       + EL  
Sbjct: 109 VVAVTGSNGKSTVTTLVT----QMAQTAGWPVSMGGNIGIP-ALKLLKQKSRLIVLELSS 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L      TH +    A +  I   H   +  G+ +  +AK  I++      T  +N D
Sbjct: 164 FQLET----THTLAAKAATVLNITEDHADRYPLGLNQYQAAKLRIYQNAH---TAVINAD 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-----WKQCSEQSWMEVQLQGKSMEV 283
           D    L +  +     K   SFG ++   ++L +     W Q S+Q+ +      K M++
Sbjct: 217 DP-LTLPRNGTQKSATKFEVSFGLNQ-GQYRLHQDGHDFWLQASDQNVLNT----KDMKL 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H   N L  L +   +    + ++KAL  +   +G   R+     +     I+
Sbjct: 271 ----IGKHNYLNALAALALADAVDIPREASLKALIEY---KGLPHRFEKIFEKNGICWIN 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AAI      S   +G    +LG         Q    D + +    N + 
Sbjct: 324 DSKATNVGSTLAAIK-----SVQCQGTLHLLLG--------GQGKSADFSILQPDLNQNR 370

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           + +  F   A   A  R      +ET++     ++S L  GD V++  S +C  +
Sbjct: 371 IQIYCFGQGAETLAALRPEVSQRTETLEQAMKLLKSRLKKGDTVLL--SPACASF 423


>gi|92116833|ref|YP_576562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           hamburgensis X14]
 gi|118595668|sp|Q1QNU5|MURD_NITHX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91799727|gb|ABE62102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           hamburgensis X14]
          Length = 466

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR    A  +AITG+ GK+TT    T  ++ + +          +IG  +     P    
Sbjct: 108 ARHAPDAPFVAITGTNGKSTT----TALVAHLMREAGHDVQMGGNIGTAILSLEPPRKGR 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    +     LT  + P + ++  ++P HL     IE  A+ K  +   ++  G
Sbjct: 164 VHVIEMSSYQID----LTPSLDPTVGILLNVSPDHLDRHGTIEHYAAVKERLIAAVQPHG 219

Query: 222 TIFLNYDD 229
           T  +  DD
Sbjct: 220 TAVVGVDD 227


>gi|226358157|ref|YP_002787896.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319800|gb|ACO47794.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 917

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 120/324 (37%), Gaps = 45/324 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLARM 156
           +  II+ITG+ GK+TT  M+   L    K      S   +IG           P +   +
Sbjct: 502 RMPIISITGTNGKSTTSRMVAHILQQSGKVVGLTTSNGIYIGGEQVVSGDTTGPKSAKVV 561

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEIF 214
             D    +  L  +  G +R         +  +  I P H  L     IE++A  K+ I 
Sbjct: 562 LSDPSVEVAVLETARGGILREGLGFATCDVGAVLNIQPDHLGLKGIETIEDLAWVKSLIV 621

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--GKSKNADFQ----------LRK 262
           E + + G   LN DD     LK +  A G   ++S   G + +A+ +          +R+
Sbjct: 622 EVVSRNGASVLNADDPL--TLKMRRKARGEIILFSMCGGGAYSAELKEHIGGGGTAIVRE 679

Query: 263 WKQCSEQ------SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                ++         +  ++ + +     G      QN L    I       +     A
Sbjct: 680 PTVLGDELVLYQDDRRQPIMRARDIPATLGGFAQVNVQNALAAAAIAVAQQVPLQMIRSA 739

Query: 317 LSVFHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           LS F    E    R        F  L+D  Y  NP  M+    ++  + P  +GR I V+
Sbjct: 740 LSSFSTSFELSPGRLNLYDGHPFRVLLD--YAHNPTGMEHLRELIGHLRPP-KGRVIGVM 796

Query: 376 G--------DMCEMGEL-SQSFHI 390
           G        D+  MGEL +Q+F +
Sbjct: 797 GVAGDRRDEDIVRMGELAAQAFDV 820


>gi|254515243|ref|ZP_05127304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
 gi|219677486|gb|EED33851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
          Length = 456

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +I ITGS  K+T  EML   + +  +  A  G    ++GVP  L  +    +F + 
Sbjct: 115 AAAPVIGITGSNAKSTVTEMLGAMVQAAGRRTAVGG----NLGVP-ALDLLDDQTEFYVL 169

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     L       +A +  + P HL     +     AK  IF G      +  
Sbjct: 170 ELSSFQLERAGPLNL----EVATVLNLTPDHLDRHGSMPLYHQAKHRIFNGCR---AVVF 222

Query: 226 NYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLR 261
           N DD     L     A G + + +  G+ +   F LR
Sbjct: 223 NVDDP----LTIPPLAAGRRQVSWRMGEPELTGFGLR 255


>gi|163852359|ref|YP_001640402.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218531119|ref|YP_002421935.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240139696|ref|YP_002964173.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
 gi|229620038|sp|A9VWV4|MURC_METEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766010|sp|B7KSC2|MURC_METC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163663964|gb|ABY31331.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218523422|gb|ACK84007.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240009670|gb|ACS40896.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
          Length = 468

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 135/344 (39%), Gaps = 40/344 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           F+ H  +  + A LVVV+T +      L   +   +  L  + +  + A L    + +A+
Sbjct: 56  FVGHRAENVENAALVVVSTAIRRDNPEL---IEARERRLPVVRRAEMLAELMRFKSCVAV 112

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTTT  ++   L +       I G   N  G   T ARM    D+ + E   S  
Sbjct: 113 AGTHGKTTTTSLVATLLDAGNLDPTVINGGIINAYG---TNARMGAG-DWMVVEADESDG 168

Query: 173 GEIRFLTHLVRP-HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 T L  P  +A++T I P HL +F   E I  A     + +   G   +  D   
Sbjct: 169 ------TFLKLPADVAIVTNIDPEHLDHFGSFEAIKDAFRRFIDNIPFYGFAVMCIDHPI 222

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEV---V 284
            + L      +  + I ++G++  AD +L        QS   V ++    G  ME+   V
Sbjct: 223 VQDLVGH---IEDRRIITYGENPQADVRLIDIDLKGGQSRFRVMIRDRRPGFRMEIEDLV 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N    L +   L    D   KAL+ F    G  +R+         T+ D+
Sbjct: 280 LPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFG---GVKRRFTRTGEWNGATIFDD 336

Query: 345 SYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379
            Y  +P  ++A +          V++ + PH   R  ++  D C
Sbjct: 337 -YGHHPVEIQAVLRAARASTDGRVIAIVQPHRYTRLQSLFEDFC 379


>gi|317484864|ref|ZP_07943756.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316923910|gb|EFV45104.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 37/296 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLTLA 154
           LA   RLR   T IAI G+ GKT+T   LT A+   +S+  T   IG   N  G    L 
Sbjct: 99  LAELMRLR---TGIAIAGTHGKTSTTS-LTAAIFDAASLDPT-VIIGGRINAYGANARLG 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +       G + +  +   +  FL  L  P I V+T +   HL ++   E I  A     
Sbjct: 154 Q-------GEYLIAEADESDGSFLCLL--PIINVVTNVDRDHLDHYGNQEAIDEAFVSFM 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G   +  DD   E L  +     +   Y FG   +   ++    +C   +  +V
Sbjct: 205 NQIPFYGLNVVCGDDPGVERLLPRVKRPVVT--YGFGSGNHIRAEV---LECGVINRFKV 259

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++G+ + EV     G H   N L  +G+      +    I+ L+ F    G G+R+   
Sbjct: 260 FIKGEELGEVTLRQPGRHNILNALAAIGVALDAGIEPHFCIEGLARFG---GVGRRFEHK 316

Query: 334 LNQGFFTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMC 379
             +    ++D+ Y  +P  + A +           V+    PH   R  A+ G+ C
Sbjct: 317 GEKNDILVVDD-YGHHPVEIAATLATARTAYPDRRVVVAFQPHRFSRTQALFGEFC 371


>gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus suis GZ1]
          Length = 398

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S DSR+++P   FFA KG  +   +F+  A++ G    V   D       + IP   
Sbjct: 36  DALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKAIEAGLDFYVSEIDY-----EVGIPAII 88

Query: 88  VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121
           V D+  A++ +A+      + +  ++A TG+ GKTT
Sbjct: 89  VHDIKQAMSLIAMDFHGHPQKQLKLLAFTGTKGKTT 124


>gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
 gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
          Length = 495

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
          P   +  +++DSRS A  + F A+ G H DG  FI  A+ +G   V+   +  A  G +
Sbjct: 18 PARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAVIAEAEGEAIDGDI 76


>gi|88812510|ref|ZP_01127759.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
 gi|88790296|gb|EAR21414.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
          Length = 457

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 10/223 (4%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPV 158
           +A  +  +  ++A+TG+ GKTTT  +L   L     +    IG    + G    L    +
Sbjct: 95  LAEEVMRERWVLAVTGTHGKTTTSSLLAWILEYAGLSPGFLIGGVPGNFGYSARLGSGDL 154

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            V  G  E   +   +     H  RP   VI  +   H   F  +  I      +   + 
Sbjct: 155 FVIEGD-EYDTAFFDKRSKFIHF-RPRTVVINNLEFDHADIFPDLAAIQRQFHYLIRTVP 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            TG I  N DD         + ALG  T +  FG   N D++L      + ++ +  + Q
Sbjct: 213 STGLIIANGDDQTI----TDTLALGCWTPVIRFGTGVNNDWRLEAIDGPNARATLTGKGQ 268

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +++ +     G H A+N+L  L         +D  I+AL  F
Sbjct: 269 NRAITLPLP--GEHNARNILAALLAAQHTGVTLDQGIEALRHF 309


>gi|333029403|ref|ZP_08457464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
 gi|332740000|gb|EGJ70482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
          Length = 441

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D  +  ++++  A R  S A +I ITGS GKTTT  +L        K     G    +IG
Sbjct: 85  DKDIPVISEIEFAGRY-SNAKMICITGSNGKTTTTSLLYHMFHKAGKNVGLAG----NIG 139

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIA 207
             L       + +F I EL    L  +    +  +  IA++  I P HL  +   +++  
Sbjct: 140 KSLARQVAEENHEFYIIELSSFQLDNM----YNFKADIAILLNITPDHLDRYDNCMDKYI 195

Query: 208 SAKAEIFEG 216
            AK  I + 
Sbjct: 196 DAKFRIIQN 204


>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Dialister micraerophilus DSM 19965]
 gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Dialister micraerophilus DSM 19965]
          Length = 498

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
          IG V +  ++ I+ DSR +     F  + G H DGH ++  AV+KGA  ++
Sbjct: 17 IGNVDKDIID-ITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKGAVAII 66


>gi|317496100|ref|ZP_07954460.1| UDP-N-acetylmuramate-alanine ligase [Gemella moribillum M424]
 gi|316913675|gb|EFV35161.1| UDP-N-acetylmuramate-alanine ligase [Gemella moribillum M424]
          Length = 435

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 41/291 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +L  +   IA+TG+ GKTTT  M +      + T   IG    H            + DF
Sbjct: 96  KLLEETPSIAVTGAHGKTTTTTMTSNIFKHNRVTSYLIGDGTGH---------GEKNSDF 146

Query: 163 GIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            I E          +  H +   P  A++T I   H   F+   ++  A       ++  
Sbjct: 147 MIAEA-------CEYYRHFLAYHPDYAIVTNIDFDHPDYFNDEYDMFDAFQSFVNQVK-- 197

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ +  DD     LK  +HA   KTI ++G +   D+Q++  +  +E S  ++      
Sbjct: 198 NTVVICGDDRLASKLKP-AHA---KTI-TYGFNDGNDYQIKNVQTSTEYSKFDIYKNNTL 252

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +      I G H   N    + +  I    V+   ++L ++ P E R   Y+ + N    
Sbjct: 253 LGTFTMAIFGLHDISNATSAIALADINGISVEKIQESLDLYRPAERRFSEYKFSSN---- 308

Query: 340 TLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCE 380
            ++ + Y  +P+ +KA I           +++   PH   R    L +  E
Sbjct: 309 -VVVDDYAHHPSEIKATIDSARRKYAGKQIVAIFQPHTYTRTAKFLNEFAE 358


>gi|182624400|ref|ZP_02952184.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
 gi|177910403|gb|EDT72780.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
          Length = 441

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
           VD+ + E+G   LG     T++V P I V+T+I+  H++     IEEIA  K     G+ 
Sbjct: 137 VDYAVLEVG---LGGRLDATNVVIPEIVVLTSISLDHMNILGNTIEEIAKEKC----GII 189

Query: 219 KTGTIFLNY--DDSFFELLKAKSHALG 243
           K+G   ++Y  ++   E++K +   LG
Sbjct: 190 KSGIPVISYPQEEKALEVIKERCDELG 216


>gi|154505722|ref|ZP_02042460.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
 gi|153794019|gb|EDN76439.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
          Length = 452

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 33/213 (15%)

Query: 51  YDGHDFI--------LHAVQKGAGLVVVNTDMVASIGSLSIPVF--GVDDVLGALNKLAV 100
           YDG+D +        +    KG+  VV+     A +  LS+ V   GV   L ++N++  
Sbjct: 34  YDGNDRLDAAGIKEQIEGQAKGSVSVVLGAFPEALLSELSLVVMSPGVPTDLPSVNQMRD 93

Query: 101 A----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           A          A +  K  ++AITG+ GKTTT  +L   + + +++   +G    +IG P
Sbjct: 94  AGIPIWGEIELAYVLGKGDVLAITGTNGKTTTTALLGAIMKNFRESTFVVG----NIGNP 149

Query: 151 LT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            T + R   D    + E+    L  I    H   P ++ I  I P HL+    +E    A
Sbjct: 150 YTSVVRETKDDSVIVAEMSSFQLETI----HTFCPKVSAILNITPDHLNRHHTMEAYIEA 205

Query: 210 KAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238
           K +I +   +     LNY+D     F E +KA+
Sbjct: 206 KEQIAKNQTEEDVCVLNYEDDVTRKFGERVKAQ 238


>gi|153009075|ref|YP_001370290.1| UDP-N-acetylmuramate--L-alanine ligase [Ochrobactrum anthropi ATCC
           49188]
 gi|166224711|sp|A6WZQ7|MURC_OCHA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151560963|gb|ABS14461.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum anthropi ATCC
           49188]
          Length = 468

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 31/281 (11%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P HL ++   E + +A A+  E +   G   +  D    + L ++   +  +
Sbjct: 177 IAVVTNIDPEHLDHYGNFENVRAAFAQFVENVPFYGFGVMCLDHPEVQALVSR---IEDR 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGI---GYHMAQNMLMT 299
            I ++G++  AD +    +     S  +V +   +G++ E+    +   G H   N    
Sbjct: 234 RIVTYGQNPQADVRFVNHRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGQHNVSNATAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS- 358
           + +   L    D   + L  F    G  +R+          + D+ Y  +P  ++A +  
Sbjct: 294 IAVAHELGISADDIRRGLGSFG---GVKRRFTHTGTWNGVEIFDD-YGHHPVEIRAVLKA 349

Query: 359 --------VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGF 409
                   V++ + PH    R+A L D     E +  F+  D   V  +Y      + G 
Sbjct: 350 AREATKGRVVAIVQPH-RYTRLASLFD-----EFAACFNDADTVIVTPVYTAGEDPIEGV 403

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
           +  AL   +  + H    Y+   + L   + S    GD VV
Sbjct: 404 NSEALVSRIKTAGHRDARYASGPEALAPLVASIAEPGDFVV 444


>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 534

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 47/260 (18%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   FFA+ G   DGHDF   A  +GA  +V    +  +  +L +      
Sbjct: 62  VTGDSREVVPGALFFALPGAVRDGHDFAAQAAARGAVAIVAERPVACAPAALLL------ 115

Query: 90  DVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIA----------LSSIK 134
            V  +   +AVAA     R      +  +TG+ GKTT   ++             L ++ 
Sbjct: 116 -VPSSRRAMAVAAANFHGRPADALRVAGVTGTNGKTTVTYLVEACARAADLPVGVLGTVT 174

Query: 135 KTYACIGSYNNHIGVPLT-----LARM------PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + +  +    +H     T     LA M       V ++     L    +G +RF      
Sbjct: 175 QRFPGVERPASHTTPESTTLHAVLAEMRAAGTRAVVLEVSSHALAQERVGGMRFAA---- 230

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              A  T +   HL     ++   +AK  +F E L   G   +N  D +   L A+   L
Sbjct: 231 ---AGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPDGVAVVNARDPYGARLAAQ---L 284

Query: 243 GI-KTIYSFGKSKNADFQLR 261
           G  + ++ +G    AD  LR
Sbjct: 285 GPGRRVWRYG--TRADDTLR 302


>gi|119962409|ref|YP_947468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           aurescens TC1]
 gi|119949268|gb|ABM08179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           aurescens TC1]
          Length = 524

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFG 163
           R  A  + ITG+ GKTTT  M    L +       +G    ++G P+  A R PVD D  
Sbjct: 139 RKTADWLTITGTNGKTTTVGMAESMLQAAGLKAIAVG----NVGTPILDALRDPVDYDAF 194

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             EL    L      +H + P  +V   +A  H+          + KA+++E  +K
Sbjct: 195 AVELSSFQL----HWSHSLSPVASVCLNVAEDHVDWHGSYASYLADKAKVYENTQK 246


>gi|330718670|ref|ZP_08313270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           fallax KCTC 3537]
          Length = 414

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           K  +I +TGS GKTTT  ++   L +  ++    G    +IG P+  +A      D  + 
Sbjct: 74  KGRLIGVTGSNGKTTTVSLIRDMLQADGQSVVTAG----NIGTPVCEVAGQLRKDDTLLL 129

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  ++P IA +T I  +HL+     E    AK +I +    T  + L
Sbjct: 130 ELSSFQL----LGTPDIQPDIAAVTNIFASHLNYHGSRENYVKAKFQITKHQLATQHLVL 185

Query: 226 NYD 228
           N D
Sbjct: 186 NAD 188


>gi|148265987|ref|YP_001232693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
 gi|189082910|sp|A5G8K2|MURD_GEOUR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146399487|gb|ABQ28120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
          Length = 453

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +AV+  I   HL  ++  +E   AK  IFE         LN DD        K  A 
Sbjct: 176 RPQVAVLLNITEDHLDRYATYQEYIDAKLRIFENQTSADYAVLNMDDPLVAAYAGKMKAR 235

Query: 243 GIKTIYSFGKSKNADFQ----LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            + T      ++   ++    + +W +  E+ +     + K         G H   N++ 
Sbjct: 236 VVPTSQRQELAQGIFYRNGSIVYRW-EGREELFATASFRLK---------GVHNIDNIMA 285

Query: 299 TLGIVSILTADVDTAIKALSVF 320
            L    ++  D   A+ AL  F
Sbjct: 286 ALASTLLMGCDAGQALAALEAF 307


>gi|296327764|ref|ZP_06870303.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155111|gb|EFG95889.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 468

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 131/326 (40%), Gaps = 36/326 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           Y+ HD       KGA  V+ +T +  S   LS   +  ++ +  L +  + A+L ++ T 
Sbjct: 58  YNEHD---EENVKGADYVIASTAIKESNPELS---YAKNNGIEILKRGELLAKLLNRETG 111

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ML+  + S   T    G           L  +  +   G  E  ++
Sbjct: 112 IAVAGTHGKTTTSSMLSAVMLSKDPTIVVGG----------ILPEIKSNAKPGKSEYFIA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P  AVIT I   HL     ++ I  +  +     +K   I L+ ++ 
Sbjct: 162 EADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIKFICHTQKEAIICLDCEN- 220

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
              L +  +     KT+ ++  K ++A+   +  K    ++  E+ +  + +      I 
Sbjct: 221 ---LKEVVTRLPEEKTVTTYSIKDESANVFAKNIKIEDRKTIFELYINKELIGEFSLNIP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF------ 338
           G H  QN L  + +        +   +AL+ F   +G  +RY       L  G+      
Sbjct: 278 GEHNIQNSLPVIYLAFKFGVSKEEIQEALNKF---KGSKRRYDVLFDKELENGYGNKTKR 334

Query: 339 FTLIDESYNANPASMKAAISVLSQIS 364
             ++D+ Y  +P  +KA +  +  I 
Sbjct: 335 VRIVDD-YAHHPTEIKATLKAIKSID 359


>gi|291563986|emb|CBL42802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SS3/4]
          Length = 448

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 22/184 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+++ IT I P HL     +E     K  I     +  T  LNY+D    +L+     L 
Sbjct: 175 PNVSAITNITPDHLDRHKTMECYIQVKEGITRNQTEEDTCVLNYEDP---VLREFGKTLK 231

Query: 244 IKTIYSFGKSK-------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K +Y   K K       + DF + +    +E+      L    + +    IG H  +N+
Sbjct: 232 CKVLYFSSKEKLDEGIFMDGDFIVYRHDGKNEKV-----LDVNELNI----IGRHNHENV 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  + I   L   +D   +A   F   E R +  R      ++   ++S   NP +   A
Sbjct: 283 MTAVAIAIHLGVPMDMIREACREFKAVEHRIEYVRERFGVTYY---NDSKGTNPDAAIQA 339

Query: 357 ISVL 360
           I  +
Sbjct: 340 IKAM 343


>gi|254562107|ref|YP_003069202.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
 gi|254269385|emb|CAX25351.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
          Length = 468

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 135/344 (39%), Gaps = 40/344 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           F+ H  +  + A LVVV+T +      L   +   +  L  + +  + A L    + +A+
Sbjct: 56  FVGHRAENVENAALVVVSTAIRRDNPEL---IEARERRLPVVRRAEMLAELMRFKSCVAV 112

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTTT  ++   L +       I G   N  G   T ARM    D+ + E   S  
Sbjct: 113 AGTHGKTTTTSLVATLLDAGNLDPTVINGGIINAYG---TNARMGAG-DWMVVEADESDG 168

Query: 173 GEIRFLTHLVRP-HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 T L  P  +A++T I P HL +F   E I  A     + +   G   +  D   
Sbjct: 169 ------TFLKLPADVAIVTNIDPEHLDHFGSFEAIKDAFRRFIDNIPFYGFAVMCIDHPI 222

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEV---V 284
            + L      +  + I ++G++  AD +L        QS   V ++    G  ME+   V
Sbjct: 223 VQDLVGH---IEDRRIITYGENPQADVRLIDIDLKGGQSRFRVMIRDRRPGFRMEIEDLV 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N    L +   L    D   KAL+ F    G  +R+         T+ D+
Sbjct: 280 LPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFG---GVKRRFTRTGEWNGATIFDD 336

Query: 345 SYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379
            Y  +P  ++A +          V++ + PH   R  ++  D C
Sbjct: 337 -YGHHPVEIQAVLRAARASTDGRVIAIVQPHRYTRLQSLFEDFC 379


>gi|296129441|ref|YP_003636691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021256|gb|ADG74492.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas
           flavigena DSM 20109]
          Length = 490

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 9/130 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  +A+TG+ GKTTT  ML   L +  +    +G    ++G P+ LA +   +D    E
Sbjct: 106 PAPWLAVTGTNGKTTTVGMLESILRAAGRRTLAVG----NVGTPVVLAAVDPALDVLAVE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     ++       A +  +AP HL     +   A+ K  I+E   +   ++  
Sbjct: 162 LSSFQLHHTVSMSA----QAAAVLNVAPDHLDWHGSLAAYAADKGRIYE-RAQVACVYDA 216

Query: 227 YDDSFFELLK 236
            D +  +L++
Sbjct: 217 SDTTTEDLVR 226


>gi|146276742|ref|YP_001166901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166224764|sp|A4WQD2|MURD_RHOS5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145554983|gb|ABP69596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 465

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ +TGS GK+TT  ++   L+   +     G+    + + L  AR   D +  + EL  
Sbjct: 122 VVCVTGSNGKSTTTALIHHILAESGRPTQMAGNIGRGV-LDLDPAR---DGEVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228
                 R LT    P +AV T ++P HL    G+    +AK  +F EG      I ++  
Sbjct: 178 YQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEP 233

Query: 229 DSFF 232
           +  +
Sbjct: 234 EGLY 237


>gi|86151786|ref|ZP_01070000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85841415|gb|EAQ58663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter
           jejuni subsp. jejuni 260.94]
          Length = 402

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 26/188 (13%)

Query: 48  GPH--YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GP   YD H FI         L++   D   ++  + IP  G       + K   A  L+
Sbjct: 24  GPFDIYDDH-FIETKKDTLGNLLLNPNDFDDNLSDIEIPSPGFPPKHKLIQK---AKNLQ 79

Query: 106 SKATI--------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           S+           + I+G+ GKTTT +M T  LS I    A +G    ++G PL  A + 
Sbjct: 80  SEYDFFYDIMPKSVWISGTNGKTTTTQMATHLLSHIG---AVMGG---NVGTPL--AELD 131

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                 I E     L      TH  +P I  + +I+P HLS     +     K  + + +
Sbjct: 132 PYAKLWILETSSFTL----HYTHKAKPEIYALLSISPDHLSWHGSFDNYVQDKLSVLKRM 187

Query: 218 EKTGTIFL 225
            +   + L
Sbjct: 188 NECDVVIL 195


>gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
 gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
          Length = 514

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 39/294 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGM 169
           + +TG+ GKT+  + +  ALS+++   A IG+  +  G+P  L A      D    +  +
Sbjct: 114 VGVTGTNGKTSCTQWIATALSALRTPCAVIGTLGS--GMPGRLVATGFTTPDAPQLQRSL 171

Query: 170 SHLGE-------IRFLTHLVRP--------HIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           + L +       +   +H ++          +AV T +   HL      E   +AKA++F
Sbjct: 172 AQLRDEGAKAVAMEVSSHALQQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLF 231

Query: 215 --EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKN---ADFQL--RKWKQC 266
              GL       +N DD+    L A + A  ++T+ Y   +  N   AD QL   + +  
Sbjct: 232 AWRGLRHA---VVNRDDAAGARLLA-TLAGRVRTVAYGIDERANAPEADRQLIAHEVRAT 287

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKE 324
           +  +   ++    S EV    +G     N+L  LG  ++L ADV  + A+  L       
Sbjct: 288 ATGTAFRLESSWGSAEVEVGTLGLFNVSNLLAVLG--TLLVADVPFEAALAELRRLESVN 345

Query: 325 GRGKRY--RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           GR +R   R A N     ++D  Y   P +++  +  L  I+    G  + + G
Sbjct: 346 GRMQRLGGRVA-NDEPLVVVD--YAHTPDALEKTLEALRPIAEARGGALVCMFG 396


>gi|229820898|ref|YP_002882424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Beutenbergia
           cavernae DSM 12333]
 gi|229566811|gb|ACQ80662.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Beutenbergia
           cavernae DSM 12333]
          Length = 505

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGP---HYDGHDFIL--HAVQKGAGLVVVNTDMVASIGSLSIP 84
           +++DSR+     A  A+ G      DG +  L   A+     LVV    +  S   L++P
Sbjct: 42  VAVDSRADVAARAAEALPGVTVLDADGDETALAERALATSPRLVVAGPGLAPSSPLLAVP 101

Query: 85  VFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               D  L   +++ +A R+R+  A  + +TG+ GKTTT EML+  L++  +    +G  
Sbjct: 102 R---DAGLEIWSEVELAWRVRADDAPWLTLTGTNGKTTTVEMLSSILTADGRLAPAVG-- 156

Query: 144 NNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFL----THLVRPHIAVITTIAPAHLS 198
             ++G P++   +    D  G+     ++  E+       T  V P  +    I+P HL 
Sbjct: 157 --NVGTPISAVALYGAPDAHGVVRPPDAYAVELSSFQLHHTFTVEPTASACLNISPDHLD 214

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
                +   + KA ++    +   ++  +D +   +++    A G + I
Sbjct: 215 WHGTFDAYRADKARVY-ARTRAACVYSTWDPATRAMVEEADVAEGARAI 262


>gi|254423500|ref|ZP_05037218.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
 gi|196190989|gb|EDX85953.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
          Length = 505

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 150/401 (37%), Gaps = 80/401 (19%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTY 137
           +L  P+F   D+L AL          ++   IAI G+ GKTTT  +    L  + +  T 
Sbjct: 124 ALGCPIFHRSDILAAL---------MNEKKGIAIAGTHGKTTTSSITGYLLLKAGVDPTI 174

Query: 138 ACIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              G       N ++G            D+ + E   S    ++  +      I VIT I
Sbjct: 175 IIGGEVSAWCGNAYVG----------QSDYVVAEADESDGSLVKLSSQ-----IGVITNI 219

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI----- 247
              H  +++ ++++ +              IF    D F    K    ++   T+     
Sbjct: 220 ELDHPDHYTSLDQVVA--------------IF----DQFVTKCKTVVGSIDCPTVRDRIQ 261

Query: 248 ----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
               YS      AD++     + ++    ++  +GK +  +    +G H   N L  + +
Sbjct: 262 PTISYSVEAEAKADYKAINIVETADGMTADILERGKLLGNLTIPLLGLHNLSNTLAAIAV 321

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISVL 360
             +L    ++    L  F     +G R R   ++GF    L  + Y  +P+ +KA ++  
Sbjct: 322 ARLLHVSFESIQTHLPNF-----KGARRRFE-HRGFHNEILFVDDYAHHPSEIKATLAAA 375

Query: 361 ----SQISPHGEGRRIAVL-------GDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSG 408
               SQ  P G GRRI  +            + E S  F   D   V  +Y+     L+G
Sbjct: 376 QVQRSQQLPSGRGRRIVAVFQPHRYSRATTLLSEFSTCFEGADRLLVTDIYSAGEANLTG 435

Query: 409 FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVV 448
                L D + + +    Y  T++     + +SL  GD+V+
Sbjct: 436 ITGEKLADVIAQHLPSTEYCGTLENTKRVLMTSLSSGDIVI 476


>gi|254414291|ref|ZP_05028058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178966|gb|EDX73963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 465

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +D+ I E+    +   R L     P I V TT  P HL+    +E   + KA++   L +
Sbjct: 171 IDWVIAEVSSYQIESSRELA----PTIGVWTTFTPDHLNRHKTLENYYTIKADL---LSR 223

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +     N DD +   L     +   K  ++  K ++A    R W    E  W+ V+ +  
Sbjct: 224 SHDQIFNGDDPYLRQLGTTHWS---KAYWTSVKGRDA--TPRPWVYI-ENGWVMVESEPI 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                   +G H  QN+LM +    +   +    ++A++ F
Sbjct: 278 VPVDSLRMVGNHNQQNLLMAVAAARLAGIEKQAIVEAITNF 318


>gi|325662354|ref|ZP_08150963.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471356|gb|EGC74579.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 450

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 24/188 (12%)

Query: 70  VNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V TD+  V  +    IP++G         ++ +A R  S   ++AITG+ GKTTT  +L 
Sbjct: 79  VPTDLPLVNQLREREIPIWG---------EVELAYRFAS-GEVLAITGTNGKTTTTALLG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHI 186
             + + + +   +G    +IG P T A + +  D   + E+    L  I        P +
Sbjct: 129 EIMKAYRDSVFVVG----NIGTPYTGASLEMKEDSVTVAEMSSFQLETI----DTFHPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +E    AK EI +   +     LNY+D   E+L+A    L  + 
Sbjct: 181 SAILNITPDHLNRHHTMEAYIQAKEEITKNQTEEDVCVLNYED---EVLRAFGEKLHTQV 237

Query: 247 IYSFGKSK 254
           +Y   + K
Sbjct: 238 LYFSSRRK 245


>gi|299131927|ref|ZP_07025122.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
 gi|298592064|gb|EFI52264.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
          Length = 465

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +AITG+ GK+TT    T   + + +          +IG  +     P     
Sbjct: 109 RHAPSAPFVAITGTNGKSTT----TALTAHLMRQAGFDVQMGGNIGTAILSLEPPAARRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P + ++  +   H+     IE  A  K  +  G+++ GT
Sbjct: 165 HVIEMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGSIENYAEVKERLVVGVQRGGT 220

Query: 223 IFLNYDDSF 231
             +  DD F
Sbjct: 221 AIVGVDDDF 229


>gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
          intestinalis L1-82]
 gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
          ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
          intestinalis L1-82]
          Length = 401

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
          +  I   S  +     F  IKG + DGHD+I+ AV+ GA  VVV+   + ++
Sbjct: 23 ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNV 74


>gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
 gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
          Length = 445

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + A +I ITGS GKTTT  ++   + S        G+    IG  L L 
Sbjct: 90  ISEIEFAGRY-TDAKMICITGSNGKTTTTSLIYHIIKSAGYDVGLAGN----IGKSLALQ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                  + + EL    L  +    +  R ++A++  I P HL  +   ++    AK  I
Sbjct: 145 VAETPHKYYVIELSSFQLDNM----YKFRANVAILLNITPDHLDRYEFKMQNYTDAKMRI 200

Query: 214 FEG-LEKTGTIFLNYD 228
            +   E+   IF N D
Sbjct: 201 TQNQTEEDSFIFWNDD 216


>gi|254513897|ref|ZP_05125958.1| mur ligase family protein [gamma proteobacterium NOR5-3]
 gi|219676140|gb|EED32505.1| mur ligase family protein [gamma proteobacterium NOR5-3]
          Length = 566

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEML-TIALSSIK------KTYACIGS-------YNNHIG 148
           RL++  T + ITG+ GKTTT  +L +IA ++ +        +  +G        Y    G
Sbjct: 169 RLKAVPTAL-ITGTNGKTTTVRLLASIARAAGRVAGVSSTDWLAMGDELLHRDDYAGPGG 227

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIEEI 206
             + L     ++      L  +  G +R    + R  +AVIT IA  HL +F    +E++
Sbjct: 228 ARIVLRDQRCELAL----LETARGGMLRRGLAVERADVAVITNIAADHLGDFGVETVEDL 283

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF 232
           A  K  +   L+K   + LN +D   
Sbjct: 284 ADVKWSVSAALDKKSCLVLNAEDPLL 309


>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC
          29149]
 gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC
          29149]
          Length = 491

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
          DSR +     F  I G   DGH ++    +KGA  V+V  D+ A  G   I V
Sbjct: 29 DSRKVEEGSVFVCISGAVSDGHQYVADVAKKGAKAVIVQQDVEAPAGMTVIRV 81


>gi|75907016|ref|YP_321312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anabaena
           variabilis ATCC 29413]
 gi|122063235|sp|Q3MF19|MURD_ANAVT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|75700741|gb|ABA20417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anabaena
           variabilis ATCC 29413]
          Length = 455

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 41/153 (26%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKA--------EIFEG----LEKTGTIFLNYDDSF 231
           PHI++ TT  P HL+    +E     KA        ++F G    L K G    ++ D++
Sbjct: 174 PHISIWTTFTPDHLARHKTLENYYDIKAKLLRQSHLQVFNGDDAYLSKIGAS--HWPDAY 231

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVH---- 285
           +  +K K + +G K  Y                   E  W+  QLQ  S    +V     
Sbjct: 232 WTSVKGKDYLIGDKGFY------------------IEDGWVVEQLQPNSSPQRIVAAEAL 273

Query: 286 HGIGYHMAQNMLMTLG---IVSILTADVDTAIK 315
             +G H  QN+LM +    +  I    +D A++
Sbjct: 274 RMVGAHNLQNLLMAVAAARLADIPPNAIDKAVR 306


>gi|313891497|ref|ZP_07825110.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
 gi|313120074|gb|EFR43253.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
          Length = 463

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 126/322 (39%), Gaps = 37/322 (11%)

Query: 56  FILHAVQ--KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  Q  K A +++V      N   V       IPVF   D+L A+            
Sbjct: 55  FVGHNPQNIKNADVLIVSTAISKNNSEVLEAKKHKIPVFHRSDLLAAI---------LCG 105

Query: 108 ATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I + G+ GK+TT  M+  +   + K     +G   +++           + +F I E
Sbjct: 106 GKSICVAGAHGKSTTSAMIGKVFCDAEKHPTVVLGGKVDYLNGNSIFG----NGEFVIAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFL 225
              S    ++F      P I+VIT I   HL ++  +E I +A  +     +K  G   L
Sbjct: 162 ADESDGSFLKF-----NPFISVITNIEDDHLDHYLTVENIKNAFIKFINQTDKINGNTIL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+   E +K+    L   +  ++G S NA+++    +        +V  +   +  V 
Sbjct: 217 CIDN---EGVKSILPKLDKNSYITYGTSDNAEYKAINKRYIDSHMMFDVYHKESFLGTVS 273

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I G H  +N L  L    I   D  T  K+L  F+   G  +R++     G   ++D+
Sbjct: 274 LMIPGTHNVRNALAALVTGLICGIDFKTIAKSLMEFN---GVKRRFQIKY-SGEVKIVDD 329

Query: 345 SYNANPASMKAAISVLSQISPH 366
            Y  +P  + + +    +   H
Sbjct: 330 -YAHHPTEIMSTLKAAKECGKH 350


>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
 gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
          Length = 445

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  MLT  +  +K+    +G   N +G  L L 
Sbjct: 91  ISEIEFAGRY-TDSKMICITGSNGKTTTT-MLTYHI--LKEAGVDVGLAGN-VGNSLALQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                    + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I
Sbjct: 146 VAEDPHAVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +   K        DD       AK H     T+Y F ++
Sbjct: 202 LQNQTKDDAFIFWNDDPIIAREIAKRHPEA--TLYPFAET 239


>gi|261206518|ref|ZP_05921218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289565428|ref|ZP_06445877.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|294614711|ref|ZP_06694613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|294618991|ref|ZP_06698486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
 gi|260079228|gb|EEW66919.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289162757|gb|EFD10608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|291592449|gb|EFF24056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|291594652|gb|EFF26034.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
          Length = 453

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAK 238
           RPHIAVIT I  AH+      +E   AK  + + + +   + LN++ S  + L    KA+
Sbjct: 182 RPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILNWNQSELQELAQRTKAR 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNML 297
                 K +   G   + D+ +   K+             K ME+   G+ G H  +N L
Sbjct: 242 VLPFSTKEVLEDGVYAD-DYSIYYKKE-------------KIMEISELGVPGKHNVENAL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFH 321
             + +  +     +   + L  FH
Sbjct: 288 AAISVAKLYGISNEAIRETLHFFH 311


>gi|157414727|ref|YP_001481983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|172047063|sp|A8FKL9|MURD_CAMJ8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157385691|gb|ABV52006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747366|gb|ADN90636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931127|gb|EFV10101.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 402

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + I+G+ GKTTT +M T  LS I    A IG    ++G PL  A +       I E    
Sbjct: 93  VWISGTNGKTTTTQMATHLLSHIG---AVIGG---NVGTPL--AELDPYAKLWILETSSF 144

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L      TH  +P I  +  I+P HLS     +     K  + + + +   + L
Sbjct: 145 TL----HYTHKAKPEIYALLPISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVIL 195


>gi|145641283|ref|ZP_01796863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae R3021]
 gi|145274120|gb|EDK13986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae 22.4-21]
          Length = 99

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          ++ + +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++
Sbjct: 19 LHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETEL 66


>gi|325962950|ref|YP_004240856.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469037|gb|ADX72722.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 458

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           T++ + G+ GK+TT  M+TI L  + +  ++A IG+    +GV             GIF 
Sbjct: 113 TVVTVAGTHGKSTTTSMVTILLQGAGLDPSFA-IGANVPALGVNAAHGTS------GIF- 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
           +  +   +  FL +  RP IAV+T + P HL ++ G  E      + F G L   G +  
Sbjct: 165 VAEADESDGSFLNY--RPRIAVVTNVEPDHLDHY-GTAEAVYESFDRFTGLLPADGLLVA 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             DD+    L  ++   G   +  +G S  AD  L
Sbjct: 222 CADDAGALALAERTRKRGNTRVLLYGTSAEADLVL 256


>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
          6-diaminopimelateligase [Yersinia intermedia ATCC
          29909]
 gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
          6-diaminopimelateligase [Yersinia intermedia ATCC
          29909]
          Length = 471

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
          +++DSR  A  + F AI G   DG  +I  A+ +G   V+   D VA   S+     +PV
Sbjct: 1  MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPV 60

Query: 86 FGVDDVLGALNKLA 99
            + ++   L+KLA
Sbjct: 61 IYLRNLNQHLSKLA 74


>gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate
          ligase [Erwinia sp. Ejp617]
          Length = 495

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G   V+   +  A  G + 
Sbjct: 18 PERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIV 77

Query: 82 ---SIPVF 86
              +PV 
Sbjct: 78 EMHGVPVI 85


>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
 gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
          Length = 445

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  MLT  +  +K+    +G   N +G  L L 
Sbjct: 91  ISEIEFAGRY-TDSKMICITGSNGKTTTT-MLTYHI--LKEAGVDVGLAGN-VGNSLALQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                    + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I
Sbjct: 146 VAEDPHAVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +   K        DD       AK H     T+Y F ++
Sbjct: 202 LQNQTKDDAFIFWNDDPIIAREIAKRHPEA--TLYPFAET 239


>gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Serratia proteamaculans 568]
 gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans
           568]
          Length = 495

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 23/222 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           +++DSR  A  + F A+ G   DG  FI  A+ +G   V+   +  A  G+++    +PV
Sbjct: 25  MTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPV 84

Query: 86  FGVDDVLGALNKLA------VAARLR-----------SKATIIAITGSVGKTTTKEMLTI 128
             +  +   L+ LA       A RLR           +   ++A  G +   T+  M T+
Sbjct: 85  IYLSQLNQRLSALAGRFYHEPAERLRLVGVTGTNGKTTTTQLLAQWGQLLGETSAVMGTV 144

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               + +      +  + + +   L  + VD    +  + +S  G ++     +    AV
Sbjct: 145 GNGLLGQVCPTENTTGSAVDIQHVLNEL-VDQGATLAAMEVSSHGLVQHRVAALPFAAAV 203

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            T ++  HL     +    +AK  +F G E  G   +N DD 
Sbjct: 204 FTNLSRDHLDYHGDMANYEAAKWSLFAGHE-VGQAIINADDE 244


>gi|311742797|ref|ZP_07716606.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
 gi|311314425|gb|EFQ84333.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
          Length = 467

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 26/262 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           T +A+ G+ GKTTT  MLT AL  + +  ++A IG+          +A +  +   G  E
Sbjct: 116 TTVAVAGTHGKTTTTAMLTCALVGAGVDPSFA-IGA---------EVASLGANARRGTGE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E      +  P  AV+T +   HL  +   E  A+A  E    + +   + L+
Sbjct: 166 VLVAEADESDGAFLVYHPAAAVVTNVDADHLDTWGTEEAYAAAFTEFIGTVAE--FVVLS 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWMEVQLQGKSME 282
            DD     L A +   G++ + + G + +A+ +    +    + +  +W   +  G    
Sbjct: 224 ADDPGARALAAPAAERGLEVLLA-GFADDAEVRGTDVVVDGTRSTFTAWRGRERLGPVEL 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V    G H  Q+ LM L     L AD    +  L+ +    G  +R +  L +     +
Sbjct: 283 AVP---GDHYVQDALMALAAGLRLGADPHGLVAGLATY---TGAHRRMQP-LGEVAGVRV 335

Query: 343 DESYNANPASMKAAISVLSQIS 364
            +SY  +P  ++A ++   Q++
Sbjct: 336 YDSYAHHPTEIRADLAAARQVA 357


>gi|69244714|ref|ZP_00602978.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257879366|ref|ZP_05659019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257881768|ref|ZP_05661421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257890192|ref|ZP_05669845.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257893520|ref|ZP_05673173.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|258615774|ref|ZP_05713544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecium DO]
 gi|260558808|ref|ZP_05830997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|293553185|ref|ZP_06673822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|293560474|ref|ZP_06676966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|293568300|ref|ZP_06679624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|294621603|ref|ZP_06700768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|314937871|ref|ZP_07845187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|314941362|ref|ZP_07848255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|314950121|ref|ZP_07853407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
 gi|314951338|ref|ZP_07854392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|314992831|ref|ZP_07858232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|314997991|ref|ZP_07862886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|68196305|gb|EAN10734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257813594|gb|EEV42352.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257817426|gb|EEV44754.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257826552|gb|EEV53178.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257829899|gb|EEV56506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|260075267|gb|EEW63580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|291589012|gb|EFF20836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|291598768|gb|EFF29820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|291602595|gb|EFF32810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|291605622|gb|EFF35064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|313588003|gb|EFR66848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|313592635|gb|EFR71480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|313596555|gb|EFR75400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|313599785|gb|EFR78628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|313642729|gb|EFS07309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|313643562|gb|EFS08142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
          Length = 453

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAK 238
           RPHIAVIT I  AH+      +E   AK  + + + +   + LN++ S  + L    KA+
Sbjct: 182 RPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILNWNQSELQELAQRTKAR 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNML 297
                 K +   G   + D+ +   K+             K ME+   G+ G H  +N L
Sbjct: 242 VLPFSTKEVLEDGVYAD-DYSIYYKKE-------------KIMEISELGVPGKHNVENAL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFH 321
             + +  +     +   + L  FH
Sbjct: 288 AAISVAKLYGISNEAIRETLHFFH 311


>gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia
          intestinalis XB6B4]
          Length = 516

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
          F  IKG + DGHD+I+ AV+ GA  VVV+   + ++
Sbjct: 39 FVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNV 74


>gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 523

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 51/246 (20%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++ S  + P + + A+ G    G  +   A  +GA  V+ +        +  +PV 
Sbjct: 39  VTGVTLASGEVGPGDLYAALPGARTHGARYAADAAARGAAAVLTDPTGREEAAATGLPVC 98

Query: 87  GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            VDD  G L   AVAAR+  +      +I ITG+ GKTTT  ++   L++  +    +G+
Sbjct: 99  VVDDPRGLLG--AVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAAGRGTGLVGT 156

Query: 143 YNNHI------GVPLT------------------LARMPVDVDFGI---------FELGM 169
                      G P                    LARM    D G+           L +
Sbjct: 157 VETRTRGRAADGTPTVTTLPSVRTTPEAPALHALLARM---ADSGVQTVVMEVSSHALVL 213

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             +G I F         A  T +   HL   + IE+   AKA +F+G  +     ++ DD
Sbjct: 214 GRVGGIPFAA-------AGFTNLGRDHLDFHTDIEDYFLAKARLFDG--RAAVEVVDVDD 264

Query: 230 SFFELL 235
            +   L
Sbjct: 265 PYGRRL 270


>gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
          Length = 487

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 164/414 (39%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N ++VA+  +  IPV    D+L AL +         K  ++A  G+ GKT+T  M   A+
Sbjct: 87  NPELVAAKDN-DIPVIRRSDLLAALME-------GHKQVLLA--GTHGKTSTTSMTVSAM 136

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             + +  ++A  G  N          R   +   G  E  ++   E         P +AV
Sbjct: 137 QHAGLDPSFAIGGQLN----------RAGTNAHGGTGEAFVAEADESDASLLRYSPDVAV 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSHALG 243
           +TTI P HL  F   E    A  ++F+        +TG + +  +D        ++   G
Sbjct: 187 LTTIEPDHLDFFHSEE----AYFQVFDDFADLVTPETGYLVVCAEDEHAARAGERALERG 242

Query: 244 IKTI------YSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGI---GYHM 292
           I  +       SF  +     +L + +  +E   + +++ L G S E V + +   G+HM
Sbjct: 243 INVVAYGSAEKSFTSTVPLAAELVREETTAEGMDTTVKLDLPGVS-ETVRYELQIPGHHM 301

Query: 293 AQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANP 350
             N +  L I  +L+     AI + L+ F     R + YR +++ QG    + + Y  +P
Sbjct: 302 VLNSMGAL-IAGVLSGGAPAAIAEGLADFSGVRRRFE-YRGSVDKQGKPVRVFDDYAHHP 359

Query: 351 AS-MKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQSFHI-DLAEVLSLYNI 401
                   +  +++   G G R+            M    E +Q+  + D A VL +Y  
Sbjct: 360 TEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVVLDIYGA 419

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               + G     + D +P  + V +          + S +  GDVV+   + S 
Sbjct: 420 REQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSV 473


>gi|145630232|ref|ZP_01786014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae R3021]
 gi|144984513|gb|EDJ91936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae R3021]
          Length = 105

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          ++ + +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++
Sbjct: 19 LHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETEL 66


>gi|330720684|gb|EGG98925.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 145/366 (39%), Gaps = 42/366 (11%)

Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  +L   +A   +  T+  IG   N  G    L    + V        
Sbjct: 121 IAVAGTHGKTTTTSLLASLLAEGGLDPTF-VIGGLLNSAGTNAKLGASRILV-------A 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL HL +P  A++T I   H+S + G   ++          L   G +    
Sbjct: 173 EADESDASFL-HL-QPMTAIVTNIDADHMSTYGGDFSKLTDTFISFLHNLPFYGLVVACI 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVH 285
           DD   + +         + + ++G ++ AD++    KQ   +     +     + ++V  
Sbjct: 231 DDDNVKAVLPDVS----RPVITYGVAEEADYRAVDIKQTGLRMTFTAKRPNDHQDLQVTL 286

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQ---GFFTL 341
           +  G+H   N +  + + +      +    AL  F   EG G+R++ C   +   G   +
Sbjct: 287 NIPGHHNVLNAMAAIAVATDEGVSDEAICAALQKF---EGVGRRFQICGEFETVNGSVLM 343

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVLSL 398
           +D+ Y  +P  +KA +  +    P    RR+ +L          +L + F   L+EV SL
Sbjct: 344 VDD-YGHHPREVKATLDTVRSSWPD---RRLVMLYQPHRYSRTRDLFEDFISVLSEVDSL 399

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVK 450
             +  V+ +    +   D       +     +D +F+         +   L DGD+++ +
Sbjct: 400 L-LMEVYPADEEPIPGADGRSLCRSIRQRGQVDPVFIDHGEDVIDVLARELKDGDILLTQ 458

Query: 451 SSNSCG 456
            + + G
Sbjct: 459 GAGNIG 464


>gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia
          intestinalis M50/1]
          Length = 516

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
          F  IKG + DGHD+I+ AV+ GA  VVV+   + ++
Sbjct: 39 FVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNV 74


>gi|330888575|gb|EGH21236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 448

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +KA  IAITGS  K+T   ++  +A+++ K+      +   ++G P  L  +  DV+  +
Sbjct: 107 AKAPGIAITGSNAKSTVTTLVGEMAVAAGKRV-----AVGGNLGTP-ALDLLSDDVELYV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +   +A +  I+  H+  +SG+     AK  IF G  +   + 
Sbjct: 161 MELSSFQLE----TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---VV 213

Query: 225 LNYDDSF 231
           +N  D+ 
Sbjct: 214 VNRQDAL 220


>gi|293192329|ref|ZP_06609440.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
 gi|292820244|gb|EFF79238.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
          Length = 463

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 25/190 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA+AA   S    + + G+ GKTTT  ML I LS+  +        +  + V   L +
Sbjct: 98  QALALAA---SGMRFVGVAGAHGKTTTSGMLAIGLSACGR--------DPSVAVGGVLPQ 146

Query: 156 MPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           +      G  ++ ++   E    FL +   P I ++T + P HL  +   EE      E 
Sbjct: 147 LGTGAHLGGGDVFVAEADESDGSFLNYT--PAIEIVTNVEPDHLDRYHSREEFEGIFVEF 204

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
              +   G +    +D     L   + A G++ + ++G+ +          AD ++    
Sbjct: 205 ARRMVPGGLLVTCAEDEGAVRLAQSARAEGLRVV-TYGRRERSLCTPDVVIADVRVEAQG 263

Query: 265 QCSEQSWMEV 274
             +  +W E+
Sbjct: 264 AGASLTWGEL 273


>gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Edwardsiella tarda ATCC 23685]
 gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Edwardsiella tarda ATCC 23685]
          Length = 495

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
          L+A+    +   P+  +  +++DSR  A  + F A+ G   DG  FI  A+ +G   ++ 
Sbjct: 6  LRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAIIA 65

Query: 71 NTDMVASIGSL 81
            D VA  G +
Sbjct: 66 EADGVAEDGCV 76


>gi|145635583|ref|ZP_01791281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae PittAA]
 gi|145267145|gb|EDK07151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae PittAA]
          Length = 105

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
          ++ + +DSR +   + F AIKG   DG+ FI  A+  GA  VV  T++
Sbjct: 19 LHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETEL 66


>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
 gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
          Length = 498

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 150/387 (38%), Gaps = 47/387 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           IG V +  ++ I+ DSR +     F  + G H DGH ++  AV+KGA  ++    +    
Sbjct: 17  IGNVDKDIID-ITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKGAIAIIAEKKISVPE 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           G   + V     V+  +  L      +S   +IA+TG+ GKTTT  +++  L        
Sbjct: 76  GVTVVYVKNTRTVMEKIAPLFFDYPSKS-MRMIAVTGTNGKTTTTHIISHILKKAGYKTG 134

Query: 139 CIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----------- 185
            IG+ +  IG     T    P  +D       M    ++  +   V  H           
Sbjct: 135 VIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKK-AKVTHVCMEVSSHSLVLGRVEGCE 193

Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKA 237
              AV + +   HL     +   A+AKA++F  + + G +       +N DD +  ++  
Sbjct: 194 FDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKPNKNACINIDDDYSHIMID 253

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 +  +++F  +++A+ ++   +   + +      + K   V    +G     N++
Sbjct: 254 AIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKNKEYPVTVKLMGRFNVYNIM 313

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE--------SYNAN 349
             +        D +  IKAL+ F    GR            F LIDE         Y   
Sbjct: 314 AAMSAALSEGIDFNFIIKALTDFTNVPGR------------FELIDEGQEFSVVVDYAHT 361

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376
           P  ++  ++   +I+    G+ I V G
Sbjct: 362 PDGLENILTTAREITT---GKIIVVFG 385


>gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
          [Erwinia pyrifoliae DSM 12163]
          Length = 495

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G   V+   +  A  G + 
Sbjct: 18 PERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIV 77

Query: 82 ---SIPVF 86
              +PV 
Sbjct: 78 EMHGVPVI 85


>gi|225011611|ref|ZP_03702049.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
 gi|225004114|gb|EEG42086.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
          Length = 445

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E+    L  I    H   PHI+VIT I P HL  +S  +E    +K +I +   +
Sbjct: 153 DYYVLEISSFQLDNI----HDFAPHISVITNITPDHLDRYSYSLENYIKSKFKIIQNQTQ 208

Query: 220 TGTIFLNYDD 229
                 N DD
Sbjct: 209 KDFFLFNADD 218


>gi|20809114|ref|NP_624285.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517793|gb|AAM25889.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 879

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 106 SKATI--IAITGSVGKTTTKEML---------TIALSSIKKTY---ACIGSYNNHIGVPL 151
           SKATI  ++ITG+ GKTT   M+         T+ +++    Y    CI   +N      
Sbjct: 474 SKATIPIVSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSA 533

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASA 209
                  ++D  + E      G +R         + VIT I+  HL     + +E++A  
Sbjct: 534 RTCLADKNIDAAVLETARG--GILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFV 591

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           KA + E ++  G   LN DD     L  K+     K IY
Sbjct: 592 KALVVEAVKDDGYSVLNADDPMTPYLAKKAKG---KIIY 627


>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
 gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
          Length = 445

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  MLT  +  +K+    +G   N +G  L L 
Sbjct: 91  ISEIEFAGRY-TDSKMICITGSNGKTTTT-MLTYHI--LKEAGVDVGLAGN-VGNSLALQ 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                    + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I
Sbjct: 146 VAEDPHAVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +   K        DD       AK H     T+Y F ++
Sbjct: 202 LQNQTKDDAFIFWNDDPIIAREIAKRHPEA--TLYPFAET 239


>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
 gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
          Length = 422

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 138/370 (37%), Gaps = 45/370 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +L +A R   + T IAITG+ GK+TT  +  + L    ++Y        +IGVP +  
Sbjct: 72  IGELELAWRF-FEGTAIAITGTDGKSTTTRLSYLIL----RSYFSHVEEGGNIGVPFSYL 126

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            M       + E+       ++      RPH+      +  HL     + +   +K  IF
Sbjct: 127 VMKNPKALAVLEVSSFQGKTLKTF----RPHVGAFLNFSEDHLDWHPDLRDYLWSKYNIF 182

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                   I LN      + +   + +   K  +  G   +       W +    S  ++
Sbjct: 183 SRQTPEDWILLNGT----QKVTRDTPSPARKVFFGDGCEAHVKEDGAYWSEEKLFSVEDI 238

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +L           IG H   N L+   I  I+    D   + L  F     RG  +R  L
Sbjct: 239 KL-----------IGKHNLYNALVACVIGRIMGVPTDRMKEVLRDF-----RGLPHRLEL 282

Query: 335 --NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             + G   + ++S +  P +++AA+  +       +GR I + G     G+   +    L
Sbjct: 283 VGDFGGVLVYNDSKSTTPNALQAALGSMP------DGRVILIAG-----GKDKGASFEHL 331

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +++   + H  L G     + DA      V  + ++D      Q     GD+++   S
Sbjct: 332 CPLVT-QKVKHAVLIGEAKRRIADAWKGCTQVSLASSLDEAIRMAQREAKPGDILLF--S 388

Query: 453 NSCGFYRLIN 462
            +C  + + +
Sbjct: 389 PACSSFDMFS 398


>gi|119953370|ref|YP_945579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
 gi|119862141|gb|AAX17909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
          Length = 451

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGIFELG 168
           IIAITG+ GK+T   +L   L  IK   + +G    +IGV PL+       V   I EL 
Sbjct: 113 IIAITGTKGKSTLASLLHKVL-VIKYPNSKLGG---NIGVSPLSFLDELDGVSPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L ++R L     P I++IT I   H + +S  +     K+ IF  + +   I ++ D
Sbjct: 169 SWQLHDLRNLC----PIISIITNIYSDHQNYYSNFDSYIEDKSRIF--INQNSGILISQD 222

Query: 229 DSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +++        K KS         +F   +N  F  +K K       +    + + + +
Sbjct: 223 QAYYNYFSRFKSKLKSILFSEAVPLNF---ENDVFYFKKGKIYLNNKVVGTLSESRIVLL 279

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   I   +A  + + L +VS +  D D
Sbjct: 280 ISKMITIFIASYLGLDLSVVSKIVTDFD 307


>gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 123/308 (39%), Gaps = 49/308 (15%)

Query: 110 IIAITGSVGKTTTKEMLT--IALSSIKK--TYACIGSYNN-----------HIGVPLTLA 154
           +IA+TG+ GKTT  +++      S++ +    A +G+  N             G  L + 
Sbjct: 164 VIAVTGTNGKTTISQLIAQLCQFSNVAQLQNSAVMGTAGNGRLDSLVQASHTTGDALAVQ 223

Query: 155 RMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           R    + D G+  L +   SH L + R    LV   +AV T ++  HL     +E+ A A
Sbjct: 224 RFLRQMHDEGVSILALEASSHGLDQQRLQAVLVT--VAVYTNLSRDHLDYHPDMEDYARA 281

Query: 210 KAEIFEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK--------NADF 258
           KA +F+     +     +N DD F  L+   +   G K  +YS    +        +A F
Sbjct: 282 KARLFDTAYFPQLTHAVINADDEFASLMAETARRSGAKVWLYSLRSEQGTINEIANDAYF 341

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              K +   E   +EV+     + +    +G     N+L  +  V  L  +++     ++
Sbjct: 342 VANKIEPSLEGVKIEVETSFGPLILHSPLLGRFNVANLLAAVAGVMALGIELEDLPALVT 401

Query: 319 VFHPKEGRGKRYR----------CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                 GR +R              LNQG F ++D ++  +     A   VL+ +  H  
Sbjct: 402 KLQGASGRMQRVNVNNDAIDDQGTVLNQGVF-IVDYAHTPD-----ALTQVLTSLKSHCS 455

Query: 369 GRRIAVLG 376
           G   A+ G
Sbjct: 456 GNLWAIFG 463


>gi|303235636|ref|ZP_07322243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
 gi|302484083|gb|EFL47071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
          Length = 453

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 14/162 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + ++ ITGS GKTTT  ++     +        G    +IG  L L 
Sbjct: 100 ISEIEFAGRY-TNSKMVCITGSNGKTTTTSLIYHIFKNAGYDVGLAG----NIGKSLALQ 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + EL    L  +    +  R +IA++  I P HL  +    E+ A AK  I
Sbjct: 155 IAEEPHEYYVIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDFQFEKYADAKMRI 210

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSK 254
            +   K  +     DD    ++K +     +K + Y F + K
Sbjct: 211 IQNQTKEDSFIYWNDDP---VIKKELEKFDVKAVQYPFSELK 249


>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           2_1_7]
          Length = 441

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  + + +I ITGS GKTTT  MLT  +  +K+    +G   N +G  L L 
Sbjct: 87  ISEIEFAGRY-TDSKMICITGSNGKTTTT-MLTYHI--LKEAGVDVGLAGN-VGNSLALQ 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                    + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I
Sbjct: 142 VAEDPHAVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRI 197

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            +   K        DD       AK H     T+Y F ++
Sbjct: 198 LQNQTKDDAFIFWNDDPIIAREIAKRHPEA--TLYPFAET 235


>gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
          [Erwinia pyrifoliae Ep1/96]
          Length = 490

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
          P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G   V+   +  A  G + 
Sbjct: 13 PERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIV 72

Query: 82 ---SIPVF 86
              +PV 
Sbjct: 73 EMHGVPVI 80


>gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 483

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 149/378 (39%), Gaps = 46/378 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--S 82
           G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +    +L  +
Sbjct: 18  GTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPTA 77

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           IP   +  +   L +  +A R  +  +    +  +TG+ GKTT    L  A   + +  A
Sbjct: 78  IPCIAIPQLAEKLGE--IAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSA 135

Query: 139 CIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGE-------IRFLTHLVRPHI-- 186
            IG+    IG     A  P++    D    +  M    E       +   +H +  H   
Sbjct: 136 YIGT----IGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHRVD 191

Query: 187 ------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--K 238
                 A+ T +   HL     ++   +AK+ +FE  E    I +N DD F +L+    K
Sbjct: 192 SLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFERAELQWAI-INQDDDFQDLMSNVLK 250

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +H   +    ++G  +N D +  +W      + +EV+       +    +G     N+  
Sbjct: 251 THVKKV----TYGMHQNCDVKALQWNMDITGTEIEVKSPWGHQLLKIKALGKF---NIYN 303

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +L + S L A      K + V    +    R    + Q  + L+D  Y   P +++  + 
Sbjct: 304 SLAVYSSLLASGHNPEKVVQVMAELKAAPGRMEI-VAQSPYVLVD--YAHTPDALENVLI 360

Query: 359 VLSQISPHGEGRRIAVLG 376
            L QI    +GR   V G
Sbjct: 361 TLKQIK---KGRLWVVFG 375


>gi|206602134|gb|EDZ38616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 487

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A LR+   ++A+ G+ GK+TT  +L   L +  +     G++    G PL+   M +   
Sbjct: 109 ASLRTSVPLVAVGGTNGKSTTSALLAHFLEAAGERVFLGGNF----GTPLS--EMVLSER 162

Query: 162 FGIFELGMSHLGEIRFLTH----LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            G   L    + E+         + RP + ++  I P HL  +  ++    AK   F+ +
Sbjct: 163 EGSSPLPTVAVVELSSFQAETMGVFRPVVNLLLNITPDHLDRYLSVDHYRRAKWNAFQTM 222

Query: 218 EKTGTIFLNYDDS 230
           EK     LN D +
Sbjct: 223 EKDSFTVLNRDPA 235


>gi|42524582|ref|NP_969962.1| hypothetical protein Bd3200 [Bdellovibrio bacteriovorus HD100]
 gi|62900538|sp|Q6MIF8|MURD_BDEBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39576791|emb|CAE80955.1| murD [Bdellovibrio bacteriovorus HD100]
          Length = 462

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           K  II +TG+ GKTT  + +T A+ +       +G  N     PL    R+       I 
Sbjct: 112 KEPIIGLTGTNGKTTVAK-ITEAILTESGVKTWVGGANEK---PLVDYLRLDDKAQVVIA 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L           P   V T +A  HL  +  +EE  +AK  IF+   +  T  L
Sbjct: 168 EVSSFMLEH----CDTFNPGNIVFTNLAENHLDRYRSMEEYVNAKRRIFKNTNQATTSIL 223

Query: 226 NYDDS 230
           N DD+
Sbjct: 224 NADDN 228


>gi|257452943|ref|ZP_05618242.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059484|ref|ZP_07923969.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685160|gb|EFS21995.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 17/179 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L +    IA+ G+ GKTTT  M++  + S+  T    G           L  +  +  
Sbjct: 95  ATLLNNKVGIAVAGTHGKTTTSSMMSAVMLSLDPTIVVGG----------ILPEIGSNAK 144

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G+ E  ++   E       ++P  AV+T I   HL     +E I  +  +  E  E+  
Sbjct: 145 VGMGEYFIAEADESDNSFLFMKPKYAVVTNIEEDHLETHGNLENIEKSFRQFVEQTER-- 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            + +  D +    + ++S     + I ++G    A+   +  +  + ++  EV +QG+S
Sbjct: 203 KVLVCTDCANVRTVFSES-----EKIMTYGMDYEANIMAKNVEIVNGKTSFEVLIQGES 256


>gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
          [Blautia hansenii DSM 20583]
 gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
          [Blautia hansenii DSM 20583]
          Length = 497

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 9  DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
          DLL+ ++   +       +  I+ DSR       FF IKG   DGH +     +KGA ++
Sbjct: 13 DLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEKGAAVL 72

Query: 69 VVN 71
          +V 
Sbjct: 73 IVQ 75


>gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
 gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
          Length = 485

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+++DSR++ P + FFA+ G   DG  F+  A+  GA  V          G L++P  
Sbjct: 22  IGGLAVDSRAVRPGDLFFALAGAKTDGARFVAAAIAAGAVAVAGEH---PPAGDLAVPFV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            + +   AL + A     R    I A+TG+ GKT+           +    A IG+
Sbjct: 79  QLSNPRLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGT 134


>gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 857

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 106 SKATI--IAITGSVGKTTTKEML---------TIALSSIKKTY---ACIGSYNNHIGVPL 151
           SKATI  ++ITG+ GKTT   M+         T+ +++    Y    CI   +N      
Sbjct: 452 SKATIPIVSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSA 511

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASA 209
                  ++D  + E      G +R         + VIT I+  HL     + +E++A  
Sbjct: 512 RTCLADKNIDAAVLETARG--GILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFV 569

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           KA + E ++  G   LN DD     L  K+     K IY
Sbjct: 570 KALVVEAVKDDGYSVLNADDPMTPYLAKKAKG---KIIY 605


>gi|148244841|ref|YP_001219535.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166224747|sp|A5CW53|MURC_VESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146326668|dbj|BAF61811.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 469

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 133/328 (40%), Gaps = 45/328 (13%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A  VV+      N   V     L+IP+    ++L  L +             IAI G+
Sbjct: 70  KNAQAVVISSAIKDNNPEVIKAHQLNIPIVPRAEMLAELMRFRFG---------IAIAGT 120

Query: 117 VGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ++T  L+   +  TY  IG   N  G+   L     + D+ I E   S   +
Sbjct: 121 HGKTTTTSIITHILNMAELDPTY-IIGGILNSSGINAKLG----ESDYLIAEADES---D 172

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             FL HL +  ++VIT I   H++ ++   +++  A       L   GT  +  DD    
Sbjct: 173 ASFL-HL-QSMLSVITNIDHEHMATYNNDYQKLKDAFVSFSANLPFYGTCIICIDDKGVN 230

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYH 291
            + +  H    + I ++G +  AD Q    KQ   Q   ++      K   +  + IG H
Sbjct: 231 EILSDIH----RPIITYGFNNGADIQAINIKQVDMQMHFDIIYDKYTKPFPIKLNLIGKH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYN 347
              N L  +GI   L   V+   KAL+ F    G  +R     +  +N    +L D+ Y 
Sbjct: 287 NILNTLAAIGICCELNIKVNIIQKALANF---SGVARRLDYHGKLNINNLQISLFDD-YG 342

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL 375
            +P  + A   V   +    + +R+ V+
Sbjct: 343 HHPKEISA---VFESLKDTYQNKRLVVI 367


>gi|39993|emb|CAA45555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|383709|prf||1904153A murD gene
          Length = 369

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G    +IG   +      D D    
Sbjct: 29  TSAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAG----NIGTVASEVAYHADGD---- 80

Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           E  ++ L   + + TH  RP I++I  +  AHL      E    AK +++     +    
Sbjct: 81  EWIVTELSSFQLMGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAI 140

Query: 225 LNYDDS 230
           +N DD 
Sbjct: 141 VNQDDE 146


>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 495

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 90/223 (40%), Gaps = 29/223 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  IS D+R++ P   F A+ G   DG  +I  A+ KGA  VV            + P  
Sbjct: 23  ITSISYDTRTLLPGALFVALPGAKTDGSLYIDEALAKGAAAVVCRRRPQREGVFFTTPDP 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT----KEMLTIALSSIKKTYACIGS 142
                L A N      R   + T+I +TG+ GKTTT    KEML  AL   K     IG+
Sbjct: 83  RRALALLAENWFGHPGR---EMTLIGVTGTNGKTTTTFLIKEMLEGAL---KTQVGLIGT 136

Query: 143 YNNHIGVPLTLARMPVDVDFGIFEL-------GMSHLGEIRFLTHLVRPH--------IA 187
             N +G  +  A       + + +L       G +H+  +   +H +  H        +A
Sbjct: 137 IQNMVGERVLPAHRTTPESYEVQQLLREMADSGCTHV-VMEVSSHALVQHRVEGLDFSVA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             T +   HL     +EE  SAK  +F    +     LN DD 
Sbjct: 196 AFTNLTQDHLDYHHTMEEYRSAKERLFHQCRRA---VLNLDDE 235


>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           pealeana ATCC 700345]
 gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 32/219 (14%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQKGAGLVVVNTD 73
           GIVP      + +DSR+  P     A + P  +    G D  +++ A Q     +V++  
Sbjct: 27  GIVP------LVMDSRAQPPGADSLATEFPQVELVTGGFDCRYLVQAQQ-----IVISPG 75

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +      + +      +V+G +   A A   ++ A +I ITGS GKTT   ++     + 
Sbjct: 76  IACETPEVRVAFDMGIEVIGDVELFARAVA-QTSAKVIGITGSNGKTTVTTLVGEMAKAS 134

Query: 134 KKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +YA  G    +IGVP L L   P   D  + EL    L      T+ ++   A    I
Sbjct: 135 GSSYAVGG----NIGVPALDLLLEP--KDLYVLELSSFQL----ETTYSLQCVAATCLNI 184

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +  H+  +S +E    AK +++   E++     N +D+ 
Sbjct: 185 SEDHMDRYSDLESYRQAKLKLY---EQSKMAVFNREDTL 220


>gi|325293467|ref|YP_004279331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
 gi|325061320|gb|ADY65011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
          Length = 469

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT    T  ++ I K          +IG  +     P    F + E    
Sbjct: 117 IAITGTNGKSTT----TALIAHILKASGRDTQLGGNIGTAVLSLDPPKAQRFYVVECSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     L   + P   ++  + P HL     ++  A  K  +  G   +GT  +  DDS
Sbjct: 173 QID----LAPTINPTAGILLNLTPDHLDRHGTMQHYADVKERLVAG---SGTAIVGVDDS 225

Query: 231 FFELLKAKSHALGIK 245
           +  L+  +    G+K
Sbjct: 226 YSTLIADRIERAGVK 240


>gi|325847851|ref|ZP_08170073.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480869|gb|EGC83922.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 436

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T   +PHI  I  I+P H+      E  A+ K ++ +  +K   + +N+DD      K K
Sbjct: 158 TKTFKPHIGAILNISPDHIDWHGSFENYANDKLKLAKNQDKDDFLVINHDDKILSKNKNK 217

Query: 239 SHALGIKTIYSF 250
             A     IY F
Sbjct: 218 FKA----KIYEF 225


>gi|294676377|ref|YP_003576992.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
 gi|294475197|gb|ADE84585.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
          Length = 468

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 21/277 (7%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE +     +   G+   G      D    + L  K   +  +
Sbjct: 180 IAIVTNIDPEHMEHWGTIENLRKGFYDFVSGIPFYGLAVCCTDHPEVQALVGK---ITDR 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302
            + +FG +  AD +    +    ++  ++QLQ +   +    +   G H   N L  + +
Sbjct: 237 RVVTFGFNAQADVRAVNLRFEGGRNCFDIQLQAEGAVIEGCTLPMPGNHNVSNALAAVAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLS 361
              L    D    AL+ F    G  +R+ +     G  T+ID+ Y  +P  + A +    
Sbjct: 297 ARHLGMKKDEIRDALANF---AGVNRRFTKVGEVLGGVTVIDD-YGHHPVEIAAVLKAAR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLA 413
           Q      G R+           L   F          D+  +  +Y      + G     
Sbjct: 353 QAVSATPGARVIAAHQPHRYTRLQNLFDDFCTCFNEADVVAIADVYAAGEEPIPGASRDD 412

Query: 414 LKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVV 448
           L   L R  H H    +  + L   ++     GD+VV
Sbjct: 413 LVSGLIRHGHRHARALLNEEDLARLVKEQARPGDIVV 449


>gi|222151005|ref|YP_002560158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
 gi|254766053|sp|B9EB51|MURD_MACCJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222120127|dbj|BAH17462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           ++++I+ ITG+ GKTT    +T  +  + K +   G    +IG V   +A+     D  +
Sbjct: 109 TESSILGITGTNGKTT----VTSLIGDMFKAHEHAGLLCGNIGFVASKVAQNAGAHDTLV 164

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I+      RPHIA+IT I  AHL      +    AK +I +   +T   +
Sbjct: 165 MELSSFQLMGIQEF----RPHIALITNIYSAHLDYHGNQQNYIDAKMQITKN--QTSEDY 218

Query: 225 LNYDDSFFELLK 236
           L ++D    LL+
Sbjct: 219 LIFNDKQRTLLQ 230


>gi|221632096|ref|YP_002521317.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
 gi|221157253|gb|ACM06380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
          Length = 469

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H + PHIAV+T+I+P HL  +   E    AK  I           +N DD     +    
Sbjct: 183 HGLSPHIAVLTSISPDHLDRYPSFEAYIDAKRAIARHQRPGDWFVVNRDDP----VAWAC 238

Query: 240 HALGIKTIYSFGKS 253
              G   +  FG+ 
Sbjct: 239 RDAGCGKVVPFGRD 252


>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
           Ellin428]
 gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
           Ellin428]
          Length = 1084

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 107/254 (42%), Gaps = 34/254 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR + P   FFA+KG   DG  FI  A+  GA  +V      A+  + +  +    
Sbjct: 619 LTYDSRRVKPGTLFFALKGEKVDGTAFIDAAIAAGAEAIVTEN---ATFRTRATNIV--- 672

Query: 90  DVLGALNKLA--VAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V  A N +A   AA  ++ A    I  +TG+ GKTTT  ++     + +     +G+  
Sbjct: 673 -VANARNTMADFAAAFYQNPARALKIAGVTGTNGKTTTAFLIKHICEAAQLRCGLLGTVR 731

Query: 145 NHIGVPLTLARMPVDVDFGIFEL--GMSHLG----EIRFLTH-LVRPHI-------AVIT 190
             IG  +  A         + E+   M   G     +   +H LV+  +       A+ T
Sbjct: 732 YEIGDRVLPASRTTPESLDVHEMLWQMRSAGCKACAMEVSSHALVQARVRDVEFDAAIFT 791

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSF-FELLKAKSHALGIK 245
            +   HL     +E    AKA +F  L    +K G   +N DD +  +L+     A+ I 
Sbjct: 792 NLTQDHLDYHKTMEAYFEAKARMFSELAAQKKKQGKAIINLDDRYGAQLVTRFGKAIPIT 851

Query: 246 TIYSFGKSKNADFQ 259
           T   +G   +ADF+
Sbjct: 852 T---YGLGVHADFR 862


>gi|163752979|ref|ZP_02160103.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
 gi|161326711|gb|EDP98036.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
          Length = 446

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A I+ ITGS GKTTT  MLT  +  +K+    +G   N +G            D  + 
Sbjct: 102 TDAMIVGITGSNGKTTTT-MLTHHV--LKEGELNVGVAGN-MGDSFAKQVAEQSYDTYVL 157

Query: 166 ELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           EL    L G I F     +P IA+IT I P HL  +    E   ++K  I   + +T   
Sbjct: 158 ELSSFQLDGIIDF-----KPRIAIITNITPDHLDRYDYKFENYIASKFRI--AMNQTKDD 210

Query: 224 FLNYD 228
           +L YD
Sbjct: 211 YLIYD 215


>gi|119944901|ref|YP_942581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
 gi|119863505|gb|ABM02982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
          Length = 445

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A ++ I+GS GK+T   +L     + K   A  G    +IG+P  L  +  ++D  I EL
Sbjct: 108 AKLVTISGSNGKSTVTSLLGEMAVAAKIKVAVGG----NIGIP-ALDLLSPEIDLYILEL 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +   IA +  I+  H+  +    +  +AK  ++   ++      N 
Sbjct: 163 SSFQLET----TFSLNADIATLLNISEDHMDRYDSYAQYTAAKHRLY---QQCKMALYNR 215

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK 252
           DD   +L   K+H+L  KT + F K
Sbjct: 216 DD---KLTYPKNHSLN-KTSFGFDK 236


Searching..................................................done


Results from round 2




>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 472/472 (100%), Positives = 472/472 (100%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA
Sbjct: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT
Sbjct: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH
Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH
Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL
Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL
Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR
Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ
Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472


>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 355/472 (75%), Positives = 408/472 (86%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWTFHDLL AIQG ++G VP+ FV GISIDSRSIAP+EAFFAIKG HYDGHDF+LHA
Sbjct: 1   MSNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQK A LVV+N +M+ASIG LS+PVF V+DVL ALNKLA AARLRS+A IIAITGSVGKT
Sbjct: 61  VQKSACLVVINAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML +ALSS  K +  I SYNNHIGVPLTLA+MP D +FGIFELGMSHLGEIRFLTH
Sbjct: 121 TAKEMLKLALSSAGKIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEIRFLTH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPHIA+ITTIAPAHL NFSGIEEIASAK+EIFEGLEKTGT+ LN DDSFFE LK KSH
Sbjct: 181 LVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFLKEKSH 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LGI  +Y+FG+S +ADF+L   +QCSE+S M VQLQGKS EVVHH +G HMAQN+L TL
Sbjct: 241 LLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAVGRHMAQNILATL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIVS+L A ++ AI+ +S+F+P++GRGKRYRCAL +GFFTLIDESYNANP SM+AAISVL
Sbjct: 301 GIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTSMRAAISVL 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQISPHG+GRRIAVLGDM EMGE ++SFHIDLAE+L  YNISHVWLSG HVLALK+ALP+
Sbjct: 361 SQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVLALKNALPK 420

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +HVHY E +D   LFIQSSL+DGDV+V+KSS+SCGF+ L+ LLLEEF  IQ
Sbjct: 421 DMHVHYRERIDDFLLFIQSSLIDGDVIVIKSSHSCGFHSLVELLLEEFTLIQ 472


>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 477

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 242/470 (51%), Positives = 328/470 (69%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++  + G   G +P+G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L++V+   + ++G L++P+  V+DVL AL +L +A+R RS+A IIA+TGSVGKT
Sbjct: 60  MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD+  AI+AL+   P++GRGKR+R  +  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P G GRRIAVLGDM EMGE +Q  H DLA  L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP 
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPP 469


>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 245/470 (52%), Positives = 330/470 (70%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSIAP EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVE 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RPH+A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD++ AI AL+   P++GRGKR+R ++  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P   GRRIAVLGDM EMGE +Q  H DL   L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP 
Sbjct: 420 SVHVEYRENTGELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPP 469


>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/470 (51%), Positives = 328/470 (69%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRS  P  AFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GE+R L  
Sbjct: 120 TTKEMLRHVLAPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEVRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD+  AI+AL+   P++GRGKR+R ++  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P G GRRIAVLGDM EMG+ +Q  H DLA  L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP 
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPP 469


>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
 gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
          Length = 477

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/470 (50%), Positives = 315/470 (67%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  D++    G  +G +P G + GISIDSR++   EAFFAIKG   DGHD+   A
Sbjct: 1   MNWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAGL+VV    + ++G L++P+  V+DVL AL KLA+AAR R+ A IIA+TGSVGKT
Sbjct: 60  VANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+   + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIAPAHL NF  IEEIASAKAEIFEGLE  G + LN D++ FE L+  + 
Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQLEEAAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ I +FG+   ADF+L  ++  S  S +   L G++ E+  +  G H+A N +  L
Sbjct: 240 DQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V++  A++D A + L      +GRG+R+R  +  G F LIDESYNANPASM+AAI+VL
Sbjct: 300 GAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++    G GRR+AVLGDM EMGE S   H +LA  L    I HVWL+G  + AL+DALP 
Sbjct: 360 AETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGEAMAALRDALPD 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+ V +  T   L  F    +  GD ++VKSS   GF +++  LL+++PA
Sbjct: 420 SVTVIWFPTTAELADFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469


>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 479

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/472 (51%), Positives = 330/472 (69%), Gaps = 3/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSIA  EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGALPEG-ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L  A+R RS+A IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAIS 358
           G+V I+ AD++ AI AL+   P++GRGKR+R ++  G   FTLIDESYNANPASM+AAI+
Sbjct: 300 GVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIA 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+   P G GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++L
Sbjct: 360 LLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           P S+HV Y E    L  ++ +++  GDV++VKSS   GF +++  LL++FPA
Sbjct: 420 PESVHVEYREKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 471


>gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
 gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
          Length = 472

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/472 (45%), Positives = 301/472 (63%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW   +L+ AI G  IG +P+ F +G+SIDSR++A  + FF IKG H DGHDF L A
Sbjct: 1   MTALWNKQELITAIDGVVIGNIPETF-HGVSIDSRALAEGDIFFCIKGHHLDGHDFALQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG+++V    +  +  +S P+  V DVL AL KL  AAR RS+A IIAITGSVGKT
Sbjct: 60  YARGAGVLIVAEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L++    +A + S NN  GVPLTLARMPV+ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQVLATAGNVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT I   H+  F  +EEIA AKAEIFEGL++ G   LN D +FF  L  K+ 
Sbjct: 180 LVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEGLDEEGIAILNADSAFFSYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+++NAD+Q R  +  +  S M V++ G+  EV     G H+ QN L  +
Sbjct: 240 QCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                +  D+D+ + +LS F P++GRG RYR +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      +GRRIAVLGDM E+GE S+  H DL + + L   + V+L G  + +L   L 
Sbjct: 360 LATGPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   + + +  GD++++KSSNS     ++  LL+ + A+
Sbjct: 420 ADVKVHYAENIEKILPLLLTEISPGDLLMIKSSNSLCSSNIVTALLDRYKAV 471


>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
 gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
          Length = 486

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/475 (50%), Positives = 327/475 (68%), Gaps = 6/475 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ AI G S G +P+G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAIVGRSFGAMPEG-ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA ++V++   + ++G L++P   VDDVL AL +L VAAR R++A IIA+TGSVGKT
Sbjct: 60  MANGAAMIVISEARLPAMGRLTVPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H  EIR L  
Sbjct: 120 TTKEMLRRTLSPSGKVHASVASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V PH+A+ITTIAPAHL NF  I EIA+AKAEIF+G+   G + LN D+  FE L+  + 
Sbjct: 180 MVEPHVAIITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAAL 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ ++SFG+   AD +L ++    E S + + + G++MEV     G H+A+N L  L
Sbjct: 240 AAGVEHVHSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V ++ AD+D AI AL+    ++GRG+R++  +  G+FTLIDESYNANPASM+AAI++L
Sbjct: 300 GTVMLVDADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGE-----GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +  SP        GRRIAVLGDM EMG+ +Q  H +LA  L    I +VWL+G  + AL+
Sbjct: 360 ATSSPDANVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGPEMAALR 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           DALP S++V Y E  + L  F+ +S+  GDV++VKSS   GF +++  LL++FPA
Sbjct: 420 DALPESVYVEYRENTEELAEFVLNSVAPGDVLMVKSSLGTGFGKIVTALLDKFPA 474


>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
 gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
          Length = 477

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 233/470 (49%), Positives = 318/470 (67%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++    G  +G +P G + GISIDSR++   EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA L+VV    + ++G L++P+  V+DVL AL KLA+AAR R+ A IIA+TGSVGKT
Sbjct: 60  VANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+   + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIAPAHL NF  IEEIA+AKAEIFEG+E+ G++ LN D++ FE L+  + 
Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ I +FG+   ADF+L  ++  +  S +   L G++ E+  +  G H+A N +  L
Sbjct: 240 EAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V++  A++D A++AL      +GRG+R+   +N G F LIDESYNANPASM+AAI+VL
Sbjct: 300 GAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++    G GRR+AVLGDM EMGE S   H +LA  L    I HVWL+G  + AL+DALP 
Sbjct: 360 AETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPD 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           S+ V +  T   L  F    +  GD ++VKSS   GF +++  LL+++PA
Sbjct: 420 SVTVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469


>gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
 gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
          Length = 473

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 213/472 (45%), Positives = 298/472 (63%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G  +G +P+ F +G+SIDSR++A  + FF IKG H DGHDF   A
Sbjct: 1   MTALWDKKALVAAINGVVMGSMPETF-SGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GAG+++V    +  +  +S P+  V DVL AL KLA AAR RS+A IIAITGSVGKT
Sbjct: 60  YERGAGVLIVAEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL+     +A + S NN  GVPLTLARMP++ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALAMTGNVHANLASLNNCWGVPLTLARMPIESDYGIFEIGMNHRDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT I   H+  F  +EEIA AKAEIFEGL++ G   LN D  FF  L  K+ 
Sbjct: 180 LVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEGLDEKGIAILNADSDFFSYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+SKNAD+Q R  +  +++S M V+++ +  EV     G H+ QN L  +
Sbjct: 240 KCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                +  +++  + +   F  ++GRG RYR +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      EGRRIA+LGDM E+GE S+  H DL + + L   + V+L G  + +L   L 
Sbjct: 360 LATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   + + +  GD+++VKSSNS     ++  LL+ + A+
Sbjct: 420 AGVKVHYAENIEKILSLLLAEISSGDLLMVKSSNSLCSSNIVTALLDRYKAV 471


>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 219/472 (46%), Positives = 308/472 (65%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT +D+++A++G   G +P G + GISIDSRS+ P EAFFAIKG  +DGHDF+  A+
Sbjct: 3   DWLWTSNDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAM 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKTT
Sbjct: 62  AAGAGLLVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H  EIR L  +
Sbjct: 122 TKEALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F+ L+  +  
Sbjct: 182 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELAEK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  +D++LR+ K     S M V++      V     G H+ QNML  LG
Sbjct: 242 AGVEHIATFGENARSDYRLREVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLG 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 302 AADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLH 361

Query: 362 QISPH-GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +P    GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  + ALK+ALP 
Sbjct: 362 STTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNALPV 421

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDV++VKSS   GF +++  L+ +FP ++
Sbjct: 422 EIQTEYRQSTDELLPLVIKAVRPGDVIMVKSSKGIGFSKIVKTLISQFPPVE 473


>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
          Length = 476

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 219/471 (46%), Positives = 305/471 (64%), Gaps = 2/471 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW   D+++A++G   G +P G + GISIDSRS+ P EAFFAIKG  +DGHDF+  A+ 
Sbjct: 4   WLWKSDDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMA 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GAGL+VV    + + G+  +P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKTTT
Sbjct: 63  AGAGLIVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H  EIR L  +V
Sbjct: 123 KEALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F+ L+  +   
Sbjct: 183 RPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELAEKA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G++ I +FG++  +D++LR+ K     S M V+       V     G H+ QNML  LG 
Sbjct: 243 GVEHIVTFGENARSDYRLREVKLHPTCSCMTVKAGTHEAAVKVGMPGRHIVQNMLAVLGA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L  
Sbjct: 303 ADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHS 362

Query: 363 ISPH-GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +P    GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  + ALK+ALP  
Sbjct: 363 TAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNALFIGGPDMSALKNALPVE 422

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           IH  Y ++ D L   +  ++  GDV++VKSS   GF +++  L+ +FP ++
Sbjct: 423 IHTEYRQSTDELLPLVVKTVRPGDVIMVKSSKGIGFSKIVKALISQFPPVE 473


>gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           schoenbuchensis R1]
          Length = 473

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 219/472 (46%), Positives = 297/472 (62%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL  + G S+G +P+ F +GISIDSRS+   + FF IKG   DGHDF   A
Sbjct: 1   MTVLWDKQTLLSVMNGLSVGCLPETF-SGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGAG++VV  + +A +  L+ P+  V DVL AL KLA AAR RSKA IIA+TGSVGKT
Sbjct: 60  YAKGAGVLVVAQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ + YA +GS+NN  GVPLTLARMP D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALGTVGRVYANLGSFNNCWGVPLTLARMPADSDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A+IT IA  H+  F  +EEIA AKAEIFEGL+  G   LN D  FF  L  K+ 
Sbjct: 180 LVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEGLDDEGVALLNADSHFFSRLVQKAE 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S+ A++Q ++    ++ S M +    + + V     G H+ QN+L  L
Sbjct: 240 QCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIGAPGRHIVQNILGVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISV 359
            +  ++ AD+     AL+ F   +GRG RYR +  N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GR+IA+LGDM E+G  S+  H DL + + +   + V+L G  +  L D L 
Sbjct: 360 LAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVFLVGKAMKFLADELS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             I V+YSE ++ L   I   + +GD++++KSS+S G  R++  LL+ +  I
Sbjct: 420 TYIKVYYSEYIEELLPLILQEISEGDLIMIKSSHSVGLSRIVVALLDRYKKI 471


>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652]
 gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 470

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 237/463 (51%), Positives = 323/463 (69%), Gaps = 3/463 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A+ G   G +P+G + GISIDSRSI   EAFFAIKG   DGHD+   A+  GA L+V
Sbjct: 1   MIAAMAGRPFGALPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+   + ++G L++P+  V+DVL AL +L  A+R RS+A IIA+TGSVGKTTTKEML   
Sbjct: 60  VSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHV 119

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  ++RP +AVI
Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + +LG++ I+S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  LG+V I+ AD
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHG 367
           ++ AI AL+   P++GRGKR+R ++  G   FTLIDESYNANPASM+AAI++L+   P G
Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           E    L  ++ +++  GDV++VKSS   GF +++  LL++FPA
Sbjct: 420 EKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 462


>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
 gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
          Length = 470

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 237/463 (51%), Positives = 321/463 (69%), Gaps = 3/463 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A+ G   G +P+G + GISIDSRSI   EAFFAIKG   DGHD+   A+  GA L+V
Sbjct: 1   MIAAMAGRPFGTLPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+   + ++G L++P+  VDDVL AL +L  A+R RS A IIA+TGSVGKTTTKEML   
Sbjct: 60  VSEARLPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHV 119

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  ++RP++AVI
Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + +LG++ I+S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  LG+V I+ AD
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHG 367
           ++ AI AL+   P++GRGKR+R ++  G   FTLIDESYNANPASM+AAI++L+   P G
Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           E    L  ++ +S+  GDV++VKSS   GF +++  LL++F  
Sbjct: 420 EKTSELTEYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFAP 462


>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
 gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
          Length = 473

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 210/472 (44%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G++IG +P+ F +GISIDSR++   + FF IKG H DGHDF + A
Sbjct: 1   MKALWDKQALITAIDGYAIGEIPETF-SGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA +++V  + +A +  +S P+  V DVL AL KLA AAR RSKA IIA+TGSVGKT
Sbjct: 60  YERGAAVLIVAENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE+L   L+++ K +A   S NNH GVPLTLARMPV+ ++G+FE+GM+H  EIR L  
Sbjct: 120 TTKEVLKQVLATVGKVHANSASLNNHWGVPLTLARMPVESNYGVFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT I+ AH+  F  +EEIA AKAEIFEGL++ G   LN DD FF  L  K+ 
Sbjct: 180 LVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADDDFFPYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K I SFG++KN+D+Q +  +  ++ S M V + G+   +     G H+ QN L  +
Sbjct: 240 QCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISV 359
                +  D++  + +LS F P++GRG RYR +L  G  F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      EGRRIA+LGDM E+G  S+  H DL + + L   + V+L G  +  L   L 
Sbjct: 360 LAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFLFGEAMKFLATDLA 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   I + + +GD++++KSS+S     +++ LL+ +  +
Sbjct: 420 AYVKVHYAENIEKILPLILAEISNGDLLMIKSSHSLYSSDIVSALLDRYKVV 471


>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
 gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
          Length = 477

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 241/472 (51%), Positives = 318/472 (67%), Gaps = 1/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  DL+ A+ G  +G +P G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MTLLWTIEDLVAAMTGRPVGTMPPG-ITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA L+VVN   + ++G L++P+  VDDVL AL +LA+AAR RS+A I+A+TGSVGKT
Sbjct: 60  VANGAALMVVNEAKLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   + +A + S+NNH GVPLTLARMP    +G+FE+GM+H GEI  L  
Sbjct: 120 TTKEMLRQVLAPSGEVHAAVASFNNHWGVPLTLARMPATAQYGVFEIGMNHSGEITPLVQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITTIAPAHL NF+ ++EIA AKAEIF G+   G + LN+D+ +FE L+ K+ 
Sbjct: 180 MVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLNHDNPYFEYLEHKAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI  I+SFG+   A+F+L ++   +E S     + G++ EVV    G H+A+N +  L
Sbjct: 240 EAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRHIAENAMAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +L AD+D A+ ALS   P +GRG+R+R     G FTLIDESYNANPASM+AAI+VL
Sbjct: 300 GAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P GEG RIAVLGDM EMGE S+  H DLA  L    I HVWL+G  + AL+  LP 
Sbjct: 360 AAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAGPLLAAGIEHVWLAGPAMAALRAQLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           ++ V    T + L  F  +S+  GDVV+VKSS   GF +++  LL+ +P + 
Sbjct: 420 TVSVASFNTAEDLAAFAVASVHGGDVVMVKSSLGIGFGKIVAALLDNYPPLD 471


>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
 gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
          Length = 481

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. 83/13]
 gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
 gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
          Length = 481

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella neotomae 5K33]
 gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
          Length = 481

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
          Length = 477

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/471 (45%), Positives = 298/471 (63%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  ++ +A+ G  +G +P G V GISIDSR++   +AFFAIKG  +DGHDF   A
Sbjct: 1   MSLLWTVQEMTEAMDGRPLGNLPDG-VTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV    + ++G L+ P+  V+DVL AL  L  AAR RS+A IIAITGSVGKT
Sbjct: 60  IATGAALLVVAEAKLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           ++KEML  AL    + +A   S+NNH GVPLTLARMP    +G+FE+GM+H  EIR L  
Sbjct: 120 SSKEMLRRALEPSGEVHASAASFNNHWGVPLTLARMPASAQYGVFEVGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIA AHL NF  + EIA+AKAEI EG+ K G + LN D+  F  LK ++ 
Sbjct: 180 MVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVLLNRDNEKFSWLKKRAS 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L    + +FG+   AD++L   K  ++ S +  ++    + V     G H+ QN L  L
Sbjct: 240 ELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVKIGAPGRHLVQNALAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V +  AD+  A  AL+    ++GRG R+  +++ G F LIDESYNANPASM+AA+ +L
Sbjct: 300 GAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNANPASMRAALELL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   GRRIAVLGDM EMG+ ++  H +LAE +   +   V LSG  + AL+D L  
Sbjct: 360 RDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCLSGSEMKALRDELGN 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            +   Y +T D L   +++ L DGDVV+VKSS   GF R++  LL+++P +
Sbjct: 420 EVETVYRDTADDLADHLKNVLRDGDVVMVKSSLGIGFGRIVKALLDKYPVL 470


>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
           Abortus 2308]
 gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis bv. 5 str. 513]
 gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 9 str. C68]
 gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
           Cpn60:Cytoplasmic peptidoglycan synthetases,
           C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
           2308]
 gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis M5-90]
          Length = 481

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis B2/94]
 gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M644/93/1]
 gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M13/05/1]
 gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M490/95/1]
 gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti B1/94]
 gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           sp. F5/99]
 gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
 gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
          Length = 481

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 305/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHLS+F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
 gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
          Length = 481

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/472 (46%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL  F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP S++AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  +   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I + Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQIEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
 gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
          Length = 481

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 -QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 LTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
 gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
          Length = 481

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
 gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
          Length = 481

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              AGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AADAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis bv. 3 str. 686]
 gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
 gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
          Length = 481

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
 gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
          Length = 481

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 220/472 (46%), Positives = 302/472 (63%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VCPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
 gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
          Length = 481

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +F ++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFDENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
 gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/470 (42%), Positives = 288/470 (61%), Gaps = 2/470 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW    L++A++   +G+   G + GISIDSRS+   +AFFAI G  +DGHDF+ +A + 
Sbjct: 5   LWETGVLIEAMRARPVGMDLPGGITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV+   + ++G +  P+  VDDVL AL +LA AAR RSKA IIA+TGSVGKTTTK
Sbjct: 65  GAALHVVSEKRLPALGRMQAPMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS+    +A + S+NNH GVPL+LAR+P D  F IFE+GM+H GEIR L  LVR
Sbjct: 125 EALRQGLSACGSVHASVASFNNHWGVPLSLARLPADSRFAIFEIGMNHPGEIRPLVKLVR 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH A++T IA AHL +F  ++EIA AKAEIFEG+   G+  +N DD+    L A + A G
Sbjct: 185 PHAAIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGSAIINADDAKCMRLAAAAKAAG 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  + +FG+++ ADF++ ++   +E + +   + G+ + V     G H AQN L  LG  
Sbjct: 245 VTNVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQ 362
            +  AD+    +AL+ +   +GRG+R++  +  G    L D+SYNANPASM+AAI  L+ 
Sbjct: 305 HVAGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLAN 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421
                 GRRIAVLGDM E+G  S + H +LAE L    I+ V L G  +  L +AL    
Sbjct: 365 AKLSENGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARVLLVGEEIKPLAEALGDEE 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           I     +T       + S +  GD ++VK+S S G  +++  L++ +P I
Sbjct: 425 IECTTHKTPTEAEEQLFSDMRAGDAIMVKASRSIGLEKVVAALVDRYPPI 474


>gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
 gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
          Length = 473

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/471 (43%), Positives = 289/471 (61%), Gaps = 2/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G  IG +P+ F +GISIDSR++   + FF IKG H DGHDF   A
Sbjct: 1   MTALWDKQALIAAIDGFVIGCMPETF-SGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG+++V  + +  +  +S P+  V DVL AL KLA AAR RS+A IIAITGSVGKT
Sbjct: 60  YARGAGVLIVAENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L+++ K +A + S NN  GVPLTLARMPV+ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQVLATVGKVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHADEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ ++T IA  H+  F  ++ IA AKAEIFEGL++ G   LN D+ FF  L  K+ 
Sbjct: 180 LVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEGLDEEGVALLNADNGFFSYLVRKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+++N+D+Q R  +  ++ S M V + G+   +     G H+ QN L  +
Sbjct: 240 QCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGRHIVQNSLAVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISV 359
               ++  D      +LS F  ++GRG RY+    N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G  S+  H DL + +   + + V+L G  +  L   L 
Sbjct: 360 LATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFLFGEAMKFLAIDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + V+Y+E ++ +   I + + +GD++++KSS S     ++  LL+ +  
Sbjct: 420 AYVKVYYAENIEKILPLIFAEISNGDLLMIKSSRSLYSSDIVTALLDHYKV 470


>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
 gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
          Length = 481

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 220/472 (46%), Positives = 302/472 (63%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  G VV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGYVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
 gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
          Length = 473

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 209/472 (44%), Positives = 292/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F  GISIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMNGFTVGCLPETF-PGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  +  P+  V DVL +L KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S+NN  GVPLTLARMP+D D+ IFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASFNNCWGVPLTLARMPIDSDYAIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGLDKDGIALLNADDHFFSYLLQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S  AD+Q ++ ++    S M V L  K + +     G HM QN L  L
Sbjct: 240 QFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + AD+   + AL+ F  ++GRG  Y+ +L N G F LIDESYNANP SM+AA+ +
Sbjct: 300 AACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNANPTSMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G+ S+  H DL + + +  +  V+L G  +  L + L 
Sbjct: 360 LATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLVGKEMKFLANDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             ++V +SE ++ +   + S + +GD++++KSS       ++  +L+ +  I
Sbjct: 420 SHVNVCHSENIEEILPLVFSEISNGDLIMIKSSRRIYLSNIVTAILDRYKVI 471


>gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
          Length = 477

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT   L+ A+ G  +G +P+G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MNLLWTSEALVTAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VAAR RS+A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   LS++ K +A   S+NNH GVPLTLARMPVD D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPVDCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEG+E  G   LN DD+ F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDGAAILNRDDARFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  M       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +++AD+D  + AL+    + GRGKR+      G  TLIDESYNANPASM AA+++L
Sbjct: 300 GAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + AL +ALP 
Sbjct: 360 NTTPVAGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMKALAEALPA 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            I   Y      L   + ++L  GDVV++KSS   GF +L++ LL +FPA
Sbjct: 420 EIQTEYRAGAAELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 469


>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
            protein [Pseudovibrio sp. JE062]
 gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
            protein [Pseudovibrio sp. JE062]
          Length = 1257

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/467 (43%), Positives = 272/467 (58%), Gaps = 2/467 (0%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            PLW   D L+A+ G   G +    + GISIDSR+I P EAFFAIKG ++DGH F   AV+
Sbjct: 785  PLWLLSDFLEAVDGDVHGDLADD-ITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVE 843

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             GA + VV+ + +  +         VDDVL AL +L VAAR RSKA IIA+TGSVGKT T
Sbjct: 844  AGASVAVVSREKLGELPEGG-RYVAVDDVLKALERLGVAARARSKARIIAVTGSVGKTGT 902

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            KE L + LS    T+A + S+NNH GVPLTLARM  D +FGIFE+GM+H GEI  L  +V
Sbjct: 903  KEALRLCLSKSGITHAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEITPLVKMV 962

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RPH+A++TT+ P HL  F+ +E+IA AKAEIF G+E  G   LN D+  ++LL+  +   
Sbjct: 963  RPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLLRYLAAVA 1022

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            G+K I SFG    A    +K     + S +   + G+ +       G H   N L  L  
Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            V  L A++  A  AL+     +GRG +    +N G   L+DESYNANPASM+AAI++++ 
Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +     GRRIAVLGDM E+G  S   H DLA  L    I  V+  G H+  L + LP   
Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVGTHMKVLWERLPAQT 1202

Query: 423  HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               YSET D L   + S +   D+V+VK S       L++ L + FP
Sbjct: 1203 RGAYSETSDKLEKDLLSEVRPNDIVMVKGSLGTRMGPLVDALKKRFP 1249



 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 35/418 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++  A  G          ++G++ DSR++ P   F A+KG   DG  FI  AV  GA
Sbjct: 7   TKQEIDSA-AGDGPDGAGALTISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAGA 65

Query: 66  GLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             ++++ D +       +  +P+   +D    L  +A A   R    ++A+TG+ GKT+ 
Sbjct: 66  AAILIDADRIDDDIRKKAKQVPLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTSV 125

Query: 123 KEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD-VDFGIFE 166
              +           A +G+                 + + +   L R+  D +     E
Sbjct: 126 AVFVRQIFEYAGLVSASLGTIGTVTSTGQSYGGLTTPDPVSLHEDLKRLAEDGITHAAME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
                L + R     VR   A  T +   H+     +E+   AK  +F + L   G + +
Sbjct: 186 ASSHGLDQHRL--DGVRIVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVI 243

Query: 226 NYDDSFFELLKAKSHALGIKTIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           + +  F + +   +   G+KT  +  FG+    D ++R  +       +E++       V
Sbjct: 244 DPEAQFADRVLEVAKERGLKTFTTGFFGE----DLKVRSVQPEGFSQVLELETAEGVFSV 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L+  G+       + TA++AL+V     G   R      +    L+ 
Sbjct: 300 ALPLAGDFQVSNALIAAGLAIAAGVPLQTALEALTVLRGAPG---RIEHVGTRENGALVF 356

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             Y   P +++   +VL+ + P   GR I+V G   +     +    +++  L+  +I
Sbjct: 357 VDYAHKPEALE---NVLAALRPFAPGRLISVFGCGGDRDAGKRPLMGEISARLADVSI 411


>gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 485

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/478 (46%), Positives = 303/478 (63%), Gaps = 9/478 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   L+ A+ G  +G +P G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MSLLWTSEALVAAMDGRPLGPMPDG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VA+R RS A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L ++ K +A   S+NNH GVPLTLARMP D D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLQAVGKVHASAQSFNNHWGVPLTLARMPDDCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEGLE  G   LN DD+ F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDARFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  +       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--------FTLIDESYNANPAS 352
           G   ++ AD+D    AL+    + GRGKR+      G          TLIDESYNANPAS
Sbjct: 300 GAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSHPGGLITLIDESYNANPAS 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+++L+     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + 
Sbjct: 360 MAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAALADLIVGTGTQTVFLGGPEMR 419

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           AL +ALP  I   Y   ++ L   + ++L  GDVV++KSS   GF +L++ LL +FPA
Sbjct: 420 ALAEALPADIKTEYRAGVEELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 477


>gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mesorhizobium loti MAFF303099]
 gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium
           loti MAFF303099]
          Length = 477

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/470 (47%), Positives = 306/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   L+ A+ G  +G +P+G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MSLLWTSDALVAAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VAAR RS+A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   LS++ K +A   S+NNH GVPLTLARMP + D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPDNCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEGLE  G   LN DD  F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDGRFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  M       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   ++ AD++    AL+    + GRGKR+      G  TLIDESYNANPASM AA+++L
Sbjct: 300 GAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + AL +ALP 
Sbjct: 360 NATPVTGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMRALAEALPG 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            I + Y   ++ L   + ++L  GDVV++KSS   GF +L++ LL ++PA
Sbjct: 420 DIKMEYRAGVEQLKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKYPA 469


>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
 gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
          Length = 458

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 222/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+   + G  +        V+G+S D+R+I     +  +KG  +DGH F+  A+ KG
Sbjct: 5   TLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +    +      +PV  VDD L AL +LA   R +  A +I ITGS GKTTTK+
Sbjct: 65  ASAVLWSETEGSPPAD--VPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L++  K     G+ NNHIGVPLTL R+  DV+  + E+GMS+ GEI  L+++  P
Sbjct: 123 IVAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL      E IA AK EI  GL+K G    N D+         +H    
Sbjct: 183 DAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLA--SRVAHLPLP 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG+    D+        +      ++ Q  +       +G H   N L  L +  
Sbjct: 241 EHVLTFGQGNKNDYYPESVHLQANGMMFTIR-QAANRSFFLPILGKHHVYNALAALAVAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +ALS          R      +  +T+I+++YNANP SMKAA+ +L +++
Sbjct: 300 FFGVSWENVQEALSRLQVTR---MRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
            +   +++AVLGDM E+G+    FH ++  +L    + +V+  G     +  A       
Sbjct: 357 GYK--KKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPD 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V+  E    L   + + +  GDV+++K+S       L+  L 
Sbjct: 415 GRVNAYEDKRALAKDLLAVVSPGDVILLKASRGMKLEELLPDLQ 458


>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 503

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/472 (45%), Positives = 289/472 (61%), Gaps = 3/472 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN  LW    +  A+    +G +P   ++GISID+R++   +AFFAI+G  +DGHDF+  
Sbjct: 1   MNEALWDVDAMAAAMHARPLGDLPAA-ISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA L VV+   + ++G +  P+  VDDVL A+++LA AAR RSKATI+A+TGSVGK
Sbjct: 60  ATKAGAALHVVSEQKLPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE L   L++  K +A   S+NNH GVPL+LAR+P D  F IFE+GM+H GEIR L 
Sbjct: 120 TTTKEALRHGLAAEGKVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEIRPLV 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LVRPH+A+IT IAPAHL +F  ++EIA AKAEIFEGL   GT  LN DD     L   +
Sbjct: 180 KLVRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPLATMA 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G+  I +FG+S  ADF+L  +    E S ME  + G+++ V     G HMAQN+L  
Sbjct: 240 RKAGVTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAV 299

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPASMKAAIS 358
           LG  S+  AD+     AL  +   +GRG R    +  G    LIDESYNANPASM+AA+ 
Sbjct: 300 LGAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALD 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS   P   GRRIAVLGDM E+G+ +   H  L E +    +  V+L+G  + AL D L
Sbjct: 360 VLSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGDEMKALDDVL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +   + E    L   +  ++  GDVV+VK+S S GF  L++ LL  +P 
Sbjct: 420 ESRVRREWHENAGELLESLLKTMRTGDVVMVKASKSIGFSPLVDKLLALYPP 471


>gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
 gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
          Length = 476

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 194/469 (41%), Positives = 273/469 (58%), Gaps = 2/469 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +PLWT    + A  G + G V    + GISIDSR++ P +AF AIKG   DGHD++  A+
Sbjct: 3   DPLWTSEVFIDACGGTAKGDVG-AHITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L +V  D +  +         VDD L A+  L VAAR R+ A I+A+TGSVGKT 
Sbjct: 62  EAGASLALVAEDSLGDLPDDG-RYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGKTG 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L +AL+   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI  L  +
Sbjct: 121 TKEALRLALAPSGKVHASVASFNNHWGVPLTLARMPADTDFGVFEIGMNHAGEITPLVQM 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+   H+  F  +E+IA AKAEIF GLE  G   LN D+  ++LL+  +  
Sbjct: 181 VRPHVAIITTVEAVHIEFFESVEKIAQAKAEIFNGLEPDGVAILNRDNKQYDLLRFLAAT 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             ++ + +FG+  + D  L+      + + +E  + G+ +       G H+ QN L  L 
Sbjct: 241 AAVRNVQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAVLT 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V+ L AD+     AL      +GRG++ R ++  G   LIDESYNANPASM+AA SVL+
Sbjct: 301 AVADLGADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSVLA 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q +  G GRRIAV+GDM E+G  +   H +L   +    I  V+ +G H+ AL D LP  
Sbjct: 361 QATLGGSGRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPHMAALWDKLPDD 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +  H+ E    L   +   +  GDVV++K S       L+  L +E+P 
Sbjct: 421 VKAHHREEAKDLIELLLKDVQPGDVVMIKGSLGTRMGPLVEALKKEYPP 469


>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
 gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
          Length = 476

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 201/469 (42%), Positives = 277/469 (59%), Gaps = 2/469 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +PLWT    ++A  G   G      + GISIDSR++ P +AF AI G   DGHD+++ A+
Sbjct: 3   DPLWTLDAFVEAAGGRLQGDAG-AEITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAM 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA + +V  D +  + +       VDD L AL K+ VAAR RS A I+A+TGSVGKT 
Sbjct: 62  EAGASVALVGEDRLPDLPADG-RYVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGKTG 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L + L+   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI  L  +
Sbjct: 121 TKEALRLTLAESGKVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNHAGEISPLVKM 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+ +ITT+ P HL  F  +E+IA AKAEIF+GLE  G   LN D+  F+LLK  + A
Sbjct: 181 VRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLAAA 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I++FG+  +AD  L+K       S ++  + G+ +       G H  +N L  L 
Sbjct: 241 AGVSKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLT 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V  L AD+  A  AL      +GRG+  R  + +G F LIDESYNANPASMKAA++VL 
Sbjct: 301 AVVDLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +      GRRIAV+GDM E+G  +   H +L + ++  NI  V+ +G H+ AL   LP  
Sbjct: 361 EAPVTRPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAVYCAGPHMHALWKLLPHD 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +  HY E    L   + S +  GDVV++K S       L+  L +E+P 
Sbjct: 421 LRGHYCEEAKDLEDVLLSDVRSGDVVMIKGSLGTRMGPLVEALKKEYPP 469


>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
 gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
          Length = 476

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 201/471 (42%), Positives = 277/471 (58%), Gaps = 3/471 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN PLWT  D +    G   G + Q  + GISIDSR+I   EAFFAIKG  +DGHDF+  
Sbjct: 1   MNAPLWTRDDFIAGANGTPKGELGQD-ITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGT 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA + VV+ D + S+ S       VDD L A+ +LAVA+R RS A I+A+TGSVGK
Sbjct: 60  ALANGASVAVVSADKLDSLPSTG-RYLIVDDPLAAMERLAVASRARSNARIVAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L +AL    K +A + S+NNH GVPLTLARMP DVDFG+FE+GMS  GEI  L 
Sbjct: 119 TGTKEALRLALGRSGKVHASVASFNNHWGVPLTLARMPADVDFGVFEIGMSAPGEITPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A ITT+   HL  F  +E IA AKAEIF+GLE  G   LN D++ F+LL   +
Sbjct: 179 RMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQFDLLMFLA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  ++ I +FG+++NAD      ++ +  S +  ++ G+ +       G H   N L  
Sbjct: 239 KADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L  ++  A +AL+     +GRG+     L +G   L+DESYNANPASM+AA+SV
Sbjct: 299 LTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +      GRRIAVLGDM E+GE     H +L++ ++   +  ++  G  +  L D +P
Sbjct: 359 LGEAEITPPGRRIAVLGDMRELGEDGPKLHAELSDPVNEAGVEALFCVGPQMKQLWDRVP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           + + V Y+E    L   +   +  GDVV+VK S       L+  L  ++P 
Sbjct: 419 QGLRVMYAEQAADLQDHLLQEIRSGDVVMVKGSLGTRMGPLVEALKTDYPP 469


>gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 458

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 222/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+   + G  +        V+G+S D+R+I     +  +KG  +DGH F+  A+ KG
Sbjct: 5   TLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +    +      +PV  VDD L AL +LA   R +  A +I ITGS GKTTTK+
Sbjct: 65  ASAVLWSETEGSPPAD--VPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L++  K     G+ NNHIGVPLTL R+  DV+  + E+GMS+ GEI  L+++  P
Sbjct: 123 IVAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL      E IA AK EI  GL+K G    N D+         +H    
Sbjct: 183 DAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLA--SRVAHLPLP 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG+    D+        +      ++ Q  +       +G H   N L  L +  
Sbjct: 241 EHVLTFGQGNKNDYYPESVHLQANGMMFTIR-QAANRSFFLPILGKHHVYNALAALAVAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +ALS          R      +  +T+I+++YNANP SMKAA+ +L +++
Sbjct: 300 FFDVSWENVQEALSRLQVTR---MRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
            +   +++AVLGDM E+G+    FH ++  +L    + +V+  G     +  A       
Sbjct: 357 GYK--KKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPD 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V+  E    L   + + +  GDV+++K+S       L+  L 
Sbjct: 415 GRVNAYEDKRALAKDLLAVVSPGDVILLKASRGMKLEELLPDLQ 458


>gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR
           15-3]
          Length = 473

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 209/472 (44%), Positives = 289/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F +GISIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTVGCLPEVF-SGISIDSRTLVEGDVFFCIKGRHLDGHDFATHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +   + P+  V DV  AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL +  K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETAGKVHANLSSLNNCWGVPLTLARMPIDSDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ ++T IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  I SFG+S  A++Q ++       S M V L  K + +     G HM QN L  L
Sbjct: 240 QCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + A++   + AL  F  ++GRG  Y+ +L N G F LIDESYNANPASM+AA+ +
Sbjct: 300 AACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      +GRRIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMRVLASDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             I V++++ ++ +F  + S + +GD++++KSS+      ++N +L  +  I
Sbjct: 420 PHITVYHAQDIEEIFPLVFSEISNGDLIMIKSSHRIYLSNIVNEILSRYKVI 471


>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Azorhizobium caulinodans ORS 571]
 gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
           caulinodans ORS 571]
          Length = 476

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 208/467 (44%), Positives = 274/467 (58%), Gaps = 4/467 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+T  ++L A  G + G +    V GISID+R++ P +AFFAI G + DGH ++  A+
Sbjct: 4   RALYTPEEILAATGGTARGTLAD--VTGISIDTRTLEPGDAFFAITGENSDGHAYVAKAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L VV  D V  +     P+  V DVLGAL  L  AAR RS+A I+A+TGSVGKTT
Sbjct: 62  ENGASLAVVAADRVQGLPDG--PLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L IALS+  +T+A   SYNNH GVPL+LAR P    +G+FE+GM+H GEI  L  +
Sbjct: 120 TKEALRIALSADGETHASAASYNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPLVRM 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+AVITT+   H++ FSGIEEIA AKAEIF+GLE  GT  LN D+  F+ L A + A
Sbjct: 180 VRPHVAVITTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVASARA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+K I SFG     + +L+        S +   + G  +       G H+ QN L  L 
Sbjct: 240 KGVKNIVSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V +L  D+  A  AL+   P  GRG     +++ G  TL+DESYNANPASM+AAI VLS
Sbjct: 300 AVRLLGGDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLS 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +      GRRIAVLGDM E+G      H +LAE L    I  V+ +G  + AL + LP S
Sbjct: 360 RTPVGPRGRRIAVLGDMLELGTEGAQHHRELAEALEAGKIDRVFCAGPLMHALWEVLPSS 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               Y+     L   I +++  GD ++VK SN      L+  L E F
Sbjct: 420 RKGGYAVHASHLEPLISAAIRAGDTLMVKGSNGSRMGPLVKALAERF 466


>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
 gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
          Length = 463

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 138/465 (29%), Positives = 218/465 (46%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+   + G           V G+S D+R+I     +  +KG  ++GH F+  A+ KG
Sbjct: 10  TLRDIQSMVDGRGLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAIDKG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+             +PV  VDD L AL +LA   R +    +I ITGS GKTTTK+
Sbjct: 70  ASAVLWAETEGTPPKD--VPVIIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTTKD 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  K     G+ NNHIGVPLTL R+  D +  + E+GMS+ GEI  L+++  P
Sbjct: 128 MIAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIAEP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +HL      E IA AK EI  GL+K G    + D+    LL  +   L +
Sbjct: 188 DAAVITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYHGDEP---LLVNRVPDLPL 244

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +  FG+  + D+  +     +  +   V  Q  +       +G H   N L  + + 
Sbjct: 245 PEHVLRFGQGSDNDYYPKAVHVQANGTTFTVH-QAPNRSFFLPILGKHHVYNALAAIAVA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A S          R      +  +T+I+++YNANP SMKAA+ +L ++
Sbjct: 304 RFFHVSWEKIQEAFSQLQVTR---MRMELIETKKGWTIINDAYNANPTSMKAALQLLHEL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
           + +   ++IAVLGDM E+G+    FH ++  +L    + +V+  G     +  A      
Sbjct: 361 TGYE--KKIAVLGDMLELGDQEVEFHREIGAMLRPEMVDYVFTYGALARHIALAAQPFFP 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   E    L   + + +  GDV+++K+S       L+  L 
Sbjct: 419 DGRVKAYEDKQSLAKDLLAVVSSGDVILLKASRGMKLEELLPDLQ 463


>gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 472

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 208/472 (44%), Positives = 288/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F +G+SIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTVGCLPEIF-SGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  ++ P+  V DVL AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EE+A AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S +AD+Q+++       S M V    K M +     G HM QN L  L
Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + AD+     AL  F  ++GRG  Y+ +L N G F LIDESYNANP SM+ A+ +
Sbjct: 300 AACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMGVLASDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + V+++E ++ +   + S + +GD++++KSS+      ++  +L  +  I
Sbjct: 420 AYVTVYHAENIEEIVPLVFSEISNGDLIMIKSSHHIYLSNIVAEILNRYKVI 471


>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mesorhizobium sp. BNC1]
 gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chelativorans sp. BNC1]
          Length = 477

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 213/470 (45%), Positives = 293/470 (62%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  DL+ A+ G   G +P+G V GISIDSR++   EAFFAIKG  +DGHDF   A
Sbjct: 1   MTLLWTSDDLVAAVGGRPFGALPEG-VTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GAGL+V++ + + ++G L++P   V DVL AL  LA AAR RS+  +IA+TGS GKT
Sbjct: 60  MAAGAGLLVISEEKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  ALSS+   +A   S+NNH GVPL+LAR+P   DF IFE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHALSSVGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPLTQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+PHIA++T IA AHL +F  ++EIA AK EIF G+   G   +N DD  F+LL   + 
Sbjct: 180 LVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADMAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ ++ FG++  + F+L + +   + S + +++ G+ +       G HM QN L  +
Sbjct: 240 EAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIGAPGRHMVQNALSVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +  ADV   + AL  F  + GRGK +   + +G FTLIDESYNANPASMKAA+ VL
Sbjct: 300 GAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANPASMKAALQVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   GRRIAVLGDM E+G  S+  H  L ++++      + L+G  + AL D  P 
Sbjct: 360 DSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLLAGTEMKALADNAPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              V Y  T++ L   +   L  GD ++VKSSN  G  RL+++LL+ +PA
Sbjct: 420 GRLVEYRPTVEELQPLLLELLQPGDAIMVKSSNGIGLSRLVDVLLKNYPA 469


>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
            [Ahrensia sp. R2A130]
 gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
            [Ahrensia sp. R2A130]
          Length = 1015

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/468 (40%), Positives = 278/468 (59%), Gaps = 2/468 (0%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            PLWT   + +A +G       +  + G+SID+RS+ P +A+FAI+G  +DGH F+  A  
Sbjct: 542  PLWTLDAMGEATKGWLPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHA 601

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             GA + VV  D V  +      +  VDDVL AL +L +AAR R+ A ++AITGSVGKTTT
Sbjct: 602  AGATVSVVAKDWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTT 661

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            KEML   L++    +A + S+NNH GVPLTLARMP D DF + E+GM+H GEI  L  + 
Sbjct: 662  KEMLRTGLAACGHVHAAVASFNNHWGVPLTLARMPADSDFAVIEIGMNHPGEITPLVQMT 721

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RPH+A+I  +A  HL  F  ++EIA AK+EIF+GL   GT  LN DD    ++  ++   
Sbjct: 722  RPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNADDERLPIMLDRATEA 781

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +     FG++ +AD +L K       S +   + G+ + +     G H+AQN L+ L +
Sbjct: 782  EVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNALVVLAV 841

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  AD+     AL+     +GRG++++ ++ QG   LIDESYNANP SM A++ +L  
Sbjct: 842  AKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASLDLLGS 901

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PR 420
              P   GRRIAVLGDM E+G  S   H D+A+ +S   IS V+L+G  + AL+D L   +
Sbjct: 902  REPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRALRDTLMNTK 961

Query: 421  SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +HV + +T D +   +   +  GDVV+VK+S    F ++IN LLE +
Sbjct: 962  GVHVTWCDTADEIGAILADEIRSGDVVMVKASLGMAFAKVINHLLERY 1009



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/456 (21%), Positives = 170/456 (37%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +++DSR + P   F A+ G   DG  F+  AV+ GA  V+ + D  A IG +S+PV 
Sbjct: 24  ITNVTVDSRKVKPGGLFIAVSGSAQDGAKFVPMAVENGAVAVLADRD--ADIGKISVPVL 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN 145
              ++  AL  +A     R    I A+TG+ GKT+    L            A IG+   
Sbjct: 82  RNGNIRKALANIASRFHPRQPEIIAAVTGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGV 141

Query: 146 -----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          P+ L  +  +     V     E     L ++R     VR  +A  
Sbjct: 142 FAPGRSDYGSLTTPDPVKLHELLDELAGEGVTHCAMEASSHGLDQMRL--DGVRLAVAGF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELL--KAKSHALGIKT 246
           T +   HL   + IEE  +AK  +F + L+      +  DD F   +   A+ H L +KT
Sbjct: 200 TNLGRDHLDYHADIEEYLTAKLRLFGDLLKPGQPAVIYADDEFSGRVIDHAEFHGLDVKT 259

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G+       +++ +Q       EV   G++  V     G     N L+  G+    
Sbjct: 260 VGREGEF----IAVKRIEQHRTSQVAEVVCDGETYRVELPLAGEFQLANALVAAGMAIAS 315

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +   A  AL+      G   R                Y   P +++   +VL+ + P+
Sbjct: 316 GMEAKAAFIALTTLEGASG---RLELIGKTTEGAACYVDYAHKPEALE---NVLAALRPY 369

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SGFHVLALKDA 417
             G+ + V G     G+        + E+ +      V +          G    A+ +A
Sbjct: 370 TTGQLVLVFGC---GGDRDPGKRAIMGEIAARM-ADRVIVTDDNPRSENPGSIRAAIMEA 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            P +  +   +  + +   +   L  GD ++V  K 
Sbjct: 426 APDATEIG--DRYEAIINAV-EGLGSGDTLIVAGKG 458


>gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 227/474 (47%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    + V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GK
Sbjct: 60  IDKGAIAVITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  K 
Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +      Y +G  K+ + +    K+  +     ++ +    E+     G H   N L  
Sbjct: 240 SS----KYYRYGI-KSGEIKACDIKKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P + R         +G   +ID+ YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKMRLNIIE----KGDMKIIDDVYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               +  ++    T + +   ++  + +GD ++VK S      +++  L E   
Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQERVK 461


>gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
 gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
          Length = 477

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/470 (46%), Positives = 307/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   DFG+FE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+   G   +N D + ++LL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  ++SFG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    + +   P++GRG R+R  +  G  T+IDESYNANPASM+AAIS+L
Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIAVLGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            + V + + +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P 
Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYPQ 469


>gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp.
           1-1C]
          Length = 472

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/472 (44%), Positives = 288/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G +IG +P+ F  G+SIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTIGCLPEIF-PGVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  ++ P+  V DVL AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S +AD+Q+++ +     S M V    K M +     G HM QN L  L
Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359
                + AD+     AL  F  ++GRG  Y+ +L N G F LIDESYNANP SM  A+ +
Sbjct: 300 AACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G+RIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVGGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLVGKEMGVLARDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + V+++E ++ +F  + S + +GD++++KSS+      ++  +L  +  I
Sbjct: 420 AYVTVYHAENIEEIFPLVFSEISNGDLIMIKSSHHIYLSNIVTEILNRYKVI 471


>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
 gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
          Length = 477

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/469 (46%), Positives = 308/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLGAMNGRPVGNLPEG-ITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   D+G+FE+GM+H GEIR LT 
Sbjct: 120 TTKEMLRHMLSPLGRVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEIRPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ +++IA+AKAEIFEG+   G   +N D + +ELL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELLEKAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  ++ FG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 TAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    +L+   P++GRG R+R  +  G+ TLIDESYNANPASM+AAI++L
Sbjct: 300 AAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNANPASMRAAITLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIA+LGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTGTEMAHLRDALPS 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS S G  +++  LL+  P
Sbjct: 420 EVSVVHRDLVSDLTAYALGAVAAGDVVMVKSSKSTGCAKIVQALLDAHP 468


>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
 gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
          Length = 459

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 137/467 (29%), Positives = 224/467 (47%), Gaps = 18/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +L++A+ G  +   P     G++ DSR +     F  + G  +DGHD+I      G
Sbjct: 4   FNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCFNAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + + +  +    G        VDD   AL  LA   R +    ++ ITGSVGKT+TK+
Sbjct: 64  ATVCLTSKQIPTVTGCT---AILVDDTAKALRDLAAWYRRKFDIPVVGITGSVGKTSTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LS   K     G++NN IG+PLT+  +    +  + E+GMS  GEI  LT + RP
Sbjct: 121 MVSCVLSQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISRLTAIARP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIA+IT I  +H+      E I  AK EI E L+K G + LN DD     LK K   L  
Sbjct: 181 HIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKGK---LSF 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +T++ +G +  +D+    ++   E  +  E+ +      V     G H   N L  +   
Sbjct: 238 RTVF-YGMNVGSDYTALNYQPKGEQGTTFEISVNDCLYNVEIPVPGIHNVYNALAAIAAG 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +   ++  I  +  F P    G   +  +N     +I+++YNA+P SM+AAI+VL +I
Sbjct: 297 IEMKIPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLQEI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDALP 419
           S     R IAVLGDM EMG++S+  H  + + +    I+++   G        A+ D   
Sbjct: 353 SSE--SRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTVGLDSRMISQAVADYGN 410

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H+ E       +I   ++ GD +++K S       + + +++
Sbjct: 411 SQTEIHHFENNKEALKYILEIVMPGDYILIKGSRGMKMEEIADGIMK 457


>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Sinorhizobium meliloti 1021]
 gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
 gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti 1021]
 gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
          Length = 477

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/470 (45%), Positives = 306/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L   AR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   DFG+FE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+   G   +N D + ++LL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  ++SFG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    + +   P++GRG R+R  +  G  T+IDESYNANPASM+AAIS+L
Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIAVLGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            + V + + +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P 
Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYPQ 469


>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 1313]
          Length = 457

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 230/462 (49%), Gaps = 18/462 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++++A+ G  I          IS DSR+I   + F  + G  +DGH++I  A++ GA  
Sbjct: 7   EEVVKAVGGTLISGEVNTVFYNISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGALG 66

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +   +     G +   +  V D L AL  LAV  R + K   + ITGSVGKT+TKEM+ 
Sbjct: 67  SLTQKETEPFPGKV---LIKVSDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMVA 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IGVPLT+  +    +  + E+GMS  GEI  LT +V+P IA
Sbjct: 124 AVLSKGFKVLKNQGNFNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +H+        I  AK EIFEGL + G   LN DD   +LL   ++ L  +T+
Sbjct: 184 IITNIGVSHIEKLGSKNNILKAKMEIFEGLNEKGLAILNGDD---KLLYGLNNLLKFRTV 240

Query: 248 YSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +G  +  D +    +   E  S  +++++GK   V     G H   N L  + +   L
Sbjct: 241 F-YGMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIEL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  ++ +  F P + R       +N     +I+++YNA+P SM+AAI VL  IS  
Sbjct: 300 GIPPEKIVEGIEEFSPGKMRLD----IINYNGLKIINDAYNASPQSMEAAIDVLKDISGE 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----VLALKDALPRSI 422
             GR  AVLGDM E+GE S+S H+++ +  +   I ++   G +    V    +A  +  
Sbjct: 356 --GRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGEYRSNIVRGAVEAGAKEE 413

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            V   +       F++  +  GDV++VK S       ++N+L
Sbjct: 414 KVFEFKDNMDAAKFLKEFVKSGDVLLVKGSRGMKMEEIVNIL 455


>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
 gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
          Length = 487

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/471 (40%), Positives = 266/471 (56%), Gaps = 8/471 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+  A+ 
Sbjct: 5   PLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALD 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAITGSV 117
           KGAG  VV          +  PV  V     D VL A+ +L +AAR R+ A IIA+TGSV
Sbjct: 63  KGAGAAVVAEVRAKEFEGVG-PVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAVTGSV 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT TKE L   LS+   T+A + SYNNH GVPLTL RMP D  FG+FE+GM+H  EI  
Sbjct: 122 GKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGAEILP 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A
Sbjct: 182 LTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLA 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A     + +FG+ + AD    +     + S ++  + G  +       G H+A N L
Sbjct: 242 HAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS++AA+
Sbjct: 302 GVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAAL 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  L +A
Sbjct: 362 ATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEA 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           LP ++    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 422 LPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
 gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
          Length = 477

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+IA  EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTCSDLLAAMNGRPVGNLPEGII-GISIDSRTIAKGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A +IA+TGSVGKT
Sbjct: 60  LANGASLLVVSEGKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A I S+NNH GVPLTLARMP   +FGIFE+GM+H GEIR LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEIRPLTA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ K G   +N D   FELL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELLERAAV 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  I+SFG +  ++++L ++   +E S +   + G++ EV     G H+A+N L  +
Sbjct: 240 AAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGAPGRHIAENALAVV 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +  AD+D  + +L+   P++GRG R+R  +  G  TLIDESYNANPASM+AAIS+L
Sbjct: 300 AAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIA+LGDM EMGE + + H  LAE +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGITDVWLAGPDIAHLRDALPG 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + E +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHREAVGDLTSYALGAVAAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/474 (29%), Positives = 228/474 (48%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D V  +   S+ V  V++ L AL+K+A     +     IA+TGS GK
Sbjct: 60  IDKGASAVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     + +K 
Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDD----MLSKI 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   Y +G  K+ + +    ++  +     ++ +    E+     G H   N L  
Sbjct: 236 PLQYSSKYYRYGI-KSGEIKACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P + R         +G   +ID+ YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKMRLNIIE----KGDIKIIDDVYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               +  ++    T + +   ++  + +GD ++VK S      +++  L E   
Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQERVK 461


>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. 18P13]
          Length = 454

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 219/468 (46%), Gaps = 22/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+ G  +   P   V  IS D+R+I P   F A++G  +DGH F   A ++GA
Sbjct: 5   TLTEIAQAVGGT-LSNCPDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+ +  +         P   VD    AL   A   R + +   + +TGSVGKTTTK M
Sbjct: 64  VAVISDHVIPD------CPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + + LS+  KT    G+ NN IG+P TL  +       + E+GMS  GEI  L+    P 
Sbjct: 118 IALVLSTHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H++     E I  AK EI +G+     + +N DD +   LK        +
Sbjct: 178 IGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPLKTTLS----R 233

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +Y++G K+  AD +  +    +  +  ++  QG    V    IG H   N      I  
Sbjct: 234 PVYTYGIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNGAAAFCIGM 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   + +    AL  + P   R    +        T+I + YNA+P SM+A++SVL Q+S
Sbjct: 294 LAGMEPEEIAGALRTYQPDGMRQNIQQI----DDKTVILDCYNASPDSMRASLSVLGQLS 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIH 423
               GRRI VLGDM E+GE S+  H  +  +++   +  ++  G     +  +A  + + 
Sbjct: 350 --VTGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRYIAEEAAKQGVP 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           V +    + L   ++ SL  GD V+ K+S       +   L   FPA+
Sbjct: 408 VQHFTEKEALTEQLRRSLQPGDAVLFKASRGMQLESVAKAL---FPAL 452


>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 459

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/463 (29%), Positives = 223/463 (48%), Gaps = 18/463 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L +A+ G  +   P     G++ DSR +     F  + G  +DGHD+I    + GA + 
Sbjct: 8   ELAEAVTGKLLWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVC 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +  +    G  ++    VDD   AL  LA   R +    ++ ITGSVGKT+TK+M++ 
Sbjct: 68  LTSKPIPEVAGCSAV---LVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSC 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS         G++NN IG+PLT+  +    +  + E+GMS  GEI  LT + RP IA+
Sbjct: 125 VLSQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRLTAIARPDIAI 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  +H+      E I  AK EI EGL K G + LN DD   + LK K   L  +T+ 
Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGK---LPFRTVL 241

Query: 249 SFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +G    +D+    ++   E  +  E+ +      V     G H   N L  +     + 
Sbjct: 242 -YGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIEMK 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  I  +  F P    G   +  +N     +I+++YNA+P SM+AAI+VL +IS   
Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISS-- 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----VLALKDALPRSIH 423
             R IAVLGDM EMG +S+  H  + E +    I+++   G        A+ D+    I 
Sbjct: 355 GSRSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITVGQDSGMISQAVADSGNGEIK 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + + E+      +I   ++ GD +++K S       + + +++
Sbjct: 415 LRHFESNKEALKYILGIVMPGDYILIKGSRGMKMEEIADGIMK 457


>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 458

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 223/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
 gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
          Length = 458

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
 gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
          Length = 458

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Ames]
 gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Sterne]
 gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A1055]
 gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Vollum]
 gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Australia 94]
 gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus anthracis CI]
 gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Ames]
 gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus
           cereus Q1]
 gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus Q1]
 gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 223/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLIKASRGMKLEEVITMLK 458


>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
 gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 458

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDVANPPEN--LPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 458

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
 gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
          Length = 458

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 232/464 (50%), Gaps = 17/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+   I G  I        ++G+S D+R+I     +  +KG  ++GH F+  A +KG
Sbjct: 5   SLADIQTMIPGSIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + +     +     +P+  V+D L AL +LA A R + +A II +TGS GKTTTK+
Sbjct: 65  AAAALWSKHEPNAPTD--VPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L ++ +     G+ NNHIGVPLTL R+  + ++ + E+GMS  GEI  L+ L  P
Sbjct: 123 MIASLLGTVYRVQKTEGNLNNHIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLSTLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +++IT I  +HL      E IA+AK EI +GL++ G    + D+    LL+ +     +
Sbjct: 183 DVSIITNIGESHLQELGSREGIATAKFEIVKGLKRDGLFIYHGDEP---LLQTRVENANL 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             + +FG +   D+     +  ++ +  +V +   ++  +    +G H   N L  + + 
Sbjct: 240 SHVQTFGMAPTNDYYPLDIRVQADGTTFKVNRWPNETFRM--PLLGRHHVMNALAAIAVA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+D   +        +    R          T+I+++YNA+P SM+AA+ +L Q+
Sbjct: 298 RFAFVDIDHIKEGFLRLSVTK---MRTEVIKRSDGVTIINDAYNASPTSMRAALELLGQL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +   ++IA++GDM E+GE   +FH  + E++    I +V   G    A+ +   +   
Sbjct: 355 TGY--RKKIAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLTYGERAKAIAERASKRFS 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V   +    L   ++  +  GDV+++K+S       +I+LL
Sbjct: 413 EGRVRAYDDKSELAADVRGIIEAGDVILLKASRGMKLEEIISLL 456


>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 479

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 197/467 (42%), Positives = 264/467 (56%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A++    G +P   + GISIDSR++ P +A+FAI+G  +DGH F+  A+ 
Sbjct: 5   PLWTASAMAEAMRATPSGALPDA-IFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GAGL VV         +   P+  VDDVL AL  L+ A+R R  A +IAITGSVGKT+T
Sbjct: 64  AGAGLAVVERAQRDKFPA-DAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L     +  +T+A + S+NNH GVPL+LAR P    F +FE+GM+H GEI+ L  LV
Sbjct: 123 KEALRAVFGAQGETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHPGEIQPLVALV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  F  +E IA AKAEIF GLE  G + LN D+  F  L+ ++ A 
Sbjct: 183 RPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQFARLRKRAKAH 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  I SFG  + AD +L       E S +   + G+ +       G HMA N L  L  
Sbjct: 243 GISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMAINSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A   LS   P  GRG R+   +  G  TLIDESYNANPASM AAI+VL Q
Sbjct: 303 AELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQ 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   +GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL    
Sbjct: 363 AAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQLWDALSTGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+E    L   + +++  GDV++VK S       ++  L   +P
Sbjct: 423 RGGYAEDAAALESQVIAAIRGGDVIMVKGSLGSRMKTIVTALERRYP 469


>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
 gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
          Length = 458

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPEN--LPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN-RVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        S  +  ++  + ++       +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQSTGTHFKMN-RDETSSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLG 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 225/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPEN--LPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN-RVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
 gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
          Length = 458

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 225/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPEN--LPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN-RVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 458

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 225/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPEN--LPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN-RVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
 gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
          Length = 458

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 226/465 (48%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
               +  +I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       
Sbjct: 356 DGFSQ--KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
 gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis]
 gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
          Length = 472

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 207/472 (43%), Positives = 281/472 (59%), Gaps = 3/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL A+ G +IG +P+ F  G+SIDSR++   + FF IK    DGHDF   A
Sbjct: 1   MTVLWDQKILLSAMDGVAIGCLPESF-PGVSIDSRTLVKGDIFFCIK-NRLDGHDFAAQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GAG +V+  + +  +  LS P+  V DVL AL +LA  AR RSKA IIA+TGSVGKT
Sbjct: 59  LARGAGALVIAQNRLDDMKQLSAPLIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L ++ K +A I S+NN  GVPLTLA+MP+D D+GIFE+GM+H  EIR L  
Sbjct: 119 TTKEALKKVLQTVGKVHANIASFNNCWGVPLTLAQMPLDSDYGIFEIGMNHKDEIRSLVK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT IA  H+  F  +EEIA AKAEIFEGL+  G   LN D  FF  L  K+ 
Sbjct: 179 LVCPHVALITHIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAE 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K I SFG+S  AD+Q ++       S M V+  G+ + +     G H+  N L  +
Sbjct: 239 QCNVKKILSFGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAISV 359
                + AD+     ALS F   +GRG RYR +L  G  F LIDESYNANP SM+AA+++
Sbjct: 299 AACDAVGADLSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNL 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS       GRRIAVLGDM E+G  S+ FH  L + +     + V+L G  +  L   L 
Sbjct: 359 LSIGPVGACGRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFLFGKEMKFLAVDLS 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   I + +  GD+++VKSS+S     ++   L+ +  I
Sbjct: 419 SYVEVHYAEHVEEILPLIFTEISKGDLIIVKSSHSTHSSHIVAAFLDRYKVI 470


>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
 gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
          Length = 458

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVIMMLK 458


>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
 gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
          Length = 458

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 226/465 (48%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
               +  +I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       
Sbjct: 356 DGFSQ--KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
 gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AIATLWMKDVENPPEN--LPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN-RVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + ++       +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETSSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
 gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
          Length = 458

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 226/465 (48%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
               +  +I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       
Sbjct: 356 DGFSQ--KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
 gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
          Length = 458

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 226/465 (48%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT +  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + +
Sbjct: 183 NAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239

Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I 
Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYIPVLGKHNVYNTLASMAIA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L         G R          T+I+++YNA+P +M+AA  +++ +
Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
               +  +I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       
Sbjct: 356 DGFSQ--KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
 gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
          Length = 487

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 191/474 (40%), Positives = 271/474 (57%), Gaps = 8/474 (1%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MNDAPLWTPAALEAATGGRLIGTP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58

Query: 59  HAVQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            A++KGAG  VV      +   +   L++P  G D VL A+ +L +AAR R+ A IIA+T
Sbjct: 59  AALEKGAGAAVVAEARAKEFEGAGPVLAVPGEGEDPVLDAMRRLGLAARARTGAAIIAVT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RMP D  FG+FE+GM+H  E
Sbjct: 119 GSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGAE 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E 
Sbjct: 179 ILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYER 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L A + A     + +FG+ + AD    +     + S ++  + G  +       G H+A 
Sbjct: 239 LLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQLGTPGRHVAM 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS++
Sbjct: 299 NSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIR 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA++ L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  L
Sbjct: 359 AALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHL 418

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +ALP  +    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 419 FEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
          Length = 479

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 192/463 (41%), Positives = 266/463 (57%), Gaps = 4/463 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  D+L A  G + G       +G+SIDSR++   + F AI G + DGH ++  A++
Sbjct: 4   PLWTKEDVLAATGGKAEGAA--WSASGVSIDSRTLEAGDLFVAIIGENSDGHAYVEGALK 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V+          + P+  V D L ALN L  AAR R+KA ++A+TGSVGKT T
Sbjct: 62  KGAAAAIVSA--PTEAMRAAGPLVIVTDTLAALNALGRAARARTKAKVVAVTGSVGKTGT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L + LS    T+A   SYNN  GVPL+LARMP    FGIFE+GM+H GEI  L+ LV
Sbjct: 120 KEALKLILSEQGATHASAASYNNLWGVPLSLARMPAATRFGIFEVGMNHPGEITPLSKLV 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +++ITT+   H+  F  +E+IA AK EIF+GL+K G   LN D+  +E L+AK+   
Sbjct: 180 EPFVSLITTVEAVHMEFFDSVEQIADAKGEIFDGLQKGGVAILNRDNPHYERLRAKAEKS 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   I SFG+ + AD +L K     + S +   + G+ +       G H+  N L  L  
Sbjct: 240 GAGRIISFGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAMLAC 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L AD+  A  A++     +GRG+R+  +   G FTL+DESYNANP SM+AA+  L +
Sbjct: 300 VHALEADLAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDALGR 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             P G GRRIAV+GDM E+GE S   H  LA+ +    I  V+  G H+  L  ALP + 
Sbjct: 360 AKPEGNGRRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVFACGPHMRELYKALPAAA 419

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              Y+ET   L   ++ ++  GDVV+VK S       L++LL 
Sbjct: 420 QGAYAETSAELGPLLRDAVEPGDVVMVKGSLGSRMGPLVDLLR 462


>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/474 (29%), Positives = 228/474 (48%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    + V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GK
Sbjct: 60  IDKGAIAVITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     + +K 
Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDD----MLSKI 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   Y +G  K+ + +    ++  +     ++ +    E+     G H   N L  
Sbjct: 236 PLQYSSKYYRYGI-KSGEIKACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P    GKR    +  G   +ID+ YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQP----GKRRLNIIEIGDIKIIDDVYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               +  ++    T + +   ++  + +GD ++VK S      +++  L E   
Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQERVK 461


>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 454

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I + 
Sbjct: 239 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G     FH ++ +++    ISHV+  G     + +       + 
Sbjct: 354 FT--KKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 454


>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
 gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
          Length = 468

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 16  LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 75

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 76  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 134 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 194 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPGMNLAAE 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 253 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 311 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 368 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 425

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 426 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 468


>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 458

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I + 
Sbjct: 243 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATH 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 301 FGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G     FH ++ +++    ISHV+  G     + +       + 
Sbjct: 358 FT--KKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 416 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 458


>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 468

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 16  LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 75

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 76  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 134 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 194 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I + 
Sbjct: 253 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATH 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 311 FGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G     FH ++ +++    I+HV+  G     + +       + 
Sbjct: 368 FT--KKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE 425

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 426 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 468


>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfotomaculum reducens MI-1]
 gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfotomaculum reducens MI-1]
          Length = 457

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 216/467 (46%), Gaps = 17/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++ Q I G  +   P   + GI  DSR   P+E F A++G   DGHDF   A+++G
Sbjct: 4   YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V+ ++        IPV  V + L AL +LA   R R    ++A+TGS GKT+TK+
Sbjct: 64  ASALLVSREITGIAPQ--IPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KT    G++NN +G+PLTL  +  +    + E+GM   GEI FL  L +P
Sbjct: 122 MIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDFLAGLAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL     +E IA AK E+   + + G   LN D  +   L         
Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGELARNCQG--- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +      D Q    +         +   G   E+     G H   N L  +G+  
Sbjct: 239 -KVWLYSLEGIGDLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVGL 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++   + L+       R +     L+     +I+++YNANP+S KAA+ VL + +
Sbjct: 298 QLGLQLEEIAQGLAQLCLTHSRLQ----ILSSNGRVIINDTYNANPSSTKAALKVLKETA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
                R+IAVLG+M E+G+L QS H ++ E  +   + ++   G     +     +    
Sbjct: 354 RS---RKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGNLAQWITQGGLKGGLS 410

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              V   +        +   L  GD ++VK S       ++  ++++
Sbjct: 411 QERVFQCQENSEAVEVLGKILKPGDTILVKGSRGMHMEYIVREIMKD 457


>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
          Length = 493

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 226/470 (48%), Gaps = 17/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WT  ++++A  G ++    +    G+SIDSR+IA  E F AIKG ++DGH F    V++G
Sbjct: 7   WTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAFAEAVVEQG 66

Query: 65  AGLVVVNTDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              +V+N      +      +  +    VD+   AL  LA   R R+  +++AITGS GK
Sbjct: 67  IKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVVAITGSNGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEM    +S    T +  G+ NN IG+PLTL ++     + + ELGM+H GEI  L 
Sbjct: 127 TSTKEMANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGMNHPGEIARLA 186

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I +IT I   HL     IE + +AK E+ +G++  GT  LN DD     L  K+
Sbjct: 187 EICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADDERVMCLARKT 246

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + +  FG S+NA  +    +     +   ++L   S+ V  +  G  M  N L  
Sbjct: 247 ----TRNVIYFGLSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMVSNALAA 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +  +L          L  F P +G   R      Q   T+ID+SYNANP SM+AAI  
Sbjct: 303 ASVGYLLNLSAQEIKSGLENFAPVKG---RMNITTLQNGVTIIDDSYNANPDSMEAAIKS 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
           L+ +     G  +A  GDM E+G  S++ H  + E+ +   I  ++ +G     +     
Sbjct: 360 LAGLKGKNRGALVA--GDMLELGIYSETLHKKIGELCAECGIERLYATGQFSSDIAAGAI 417

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                I   ++ + + +   +   L   D +++K S + G  +++  L E
Sbjct: 418 IGGMDISSVFTGSQEDILSDMTEWLRPEDWILIKGSRAMGMEKIVVKLKE 467


>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 458

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 223/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVTLQATGTHFKMN-REENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G     FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPT 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELAKELQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 458

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 243 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 301 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       + 
Sbjct: 358 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPNE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 416 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
 gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
          Length = 454

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPGMNLAAE 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 239 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 354 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 454


>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
 gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
          Length = 458

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPGMNLAAE 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 243 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 301 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 358 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 416 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 468

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/480 (26%), Positives = 217/480 (45%), Gaps = 27/480 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   +++A  G  +   P   + GIS D+R+I   + F A++G  +DGH FI  A
Sbjct: 1   MEPI-SLSKIIEATGGTLLSGTPDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +V+ ++ +        +  V D L  L  +A   R      +IA+TGS GKT
Sbjct: 60  FKKGAIGAIVSREVESKN-----IIIKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   KT    GSYNN +GVPLTL  M       + E+  + LG I+ L  
Sbjct: 115 TTKEMLGYILTREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGGIKRLCE 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P + V+T I   HL      E +   K+E+ E L + G   LN DD +   +K  S 
Sbjct: 175 IAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLKMKEISR 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K I +FG    ++F     +     +++E  L   +  V  + I Y    N L  +
Sbjct: 235 T---KRIVTFGVENKSEFSASNIRVGD--TFLEFTLNN-NYRVKLNTISYCNVYNGLAAI 288

Query: 301 GIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFTLIDESYNANPASM 353
            +   +    ++  I  L  F     R +     L      N+    +I++ YNANP SM
Sbjct: 289 AVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNANPQSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + A+  + +++ +    +IA+LG+M E+GE +  FH  + ++ +      +   G     
Sbjct: 349 QEALVAVGKMNSYTN--KIAILGEMLELGEKAPEFHYQIGKICADCGFDMLITVGDLAQY 406

Query: 414 LK-----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +      + +PR         ++     ++  L  GD+V++K S       ++  L +  
Sbjct: 407 MAHGAEDEGMPRENIFVSVNNVEASDRLLR-ILRPGDIVLIKGSRGMKMEEIVERLRKRL 465


>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 458

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 243 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 301 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 358 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 416 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
 gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
          Length = 454

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I + 
Sbjct: 239 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G     FH ++ +++    I+HV+  G     + +       + 
Sbjct: 354 FT--KKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 454


>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
 gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
          Length = 458

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 243 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 301 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       + 
Sbjct: 358 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPNE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 416 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
 gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
          Length = 454

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTGLEEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I   
Sbjct: 239 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 354 F--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 454


>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
 gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 225/463 (48%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  +
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAAE 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I + 
Sbjct: 243 TV-TFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATH 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 301 FGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               ++I VLGDM E+G     FH ++ +++    I+HV+  G     + +       + 
Sbjct: 358 FT--KKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 416 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 458


>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
 gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 218/468 (46%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++++A  G  I       +NG+S DSR++ P + F A+ G  YDGHDFI +AV  GA
Sbjct: 4   TVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+++ D         IP+  V+D L AL +LA   R     T++AITGS GKTTTKE 
Sbjct: 64  SAVMLSKDT----ADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKEF 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS         G+ NN IG+PLT+  +     + + E+GMS LGEI  L  + RPH
Sbjct: 120 IYAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLADIARPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H+      + I  AK E+F+         LN DD     L    H++   
Sbjct: 180 IGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTL----HSVLPC 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  F      D ++   +        +  V   G+  ++  +  G+H   N L  + + 
Sbjct: 236 RVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQREDIYLNIAGFHNVYNSLAAVLVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +      +   +    R + ++         LID++YNANP SM+AAI VL  +
Sbjct: 296 MEANVPLKQIKAGIESLYDTPQRLRMFQIYP---DIQLIDDTYNANPDSMRAAIEVLCDL 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                 R+IAVLGDM E+G ++++ H +L  +++   I  +   G     + D    S  
Sbjct: 353 DS---ARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDVLVTVGRLAHFIADGAEASGM 409

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +++   + D    ++   +  GD +++K S+      ++  L E 
Sbjct: 410 DAHNIYRFNSNDDAISWLDEHITHGDAILIKGSHGMHMDEIVKYLQEH 457


>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
 gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
          Length = 458

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 225/464 (48%), Gaps = 16/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 6   LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 66  VATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +    +  + E+GMS  GEI FL+ L RP+
Sbjct: 124 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIEFLSKLARPN 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+    LL  +   + + 
Sbjct: 184 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNLA 240

Query: 246 T-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T   +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 241 TETVTFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       +
Sbjct: 357 GF--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 482

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/473 (38%), Positives = 256/473 (54%), Gaps = 8/473 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +L  A  G   G   +  ++G SID+R++ P + FFAI+G   DGHDF+  A
Sbjct: 1   MTALWTREELESATGGCLTGA--ERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATIIAITG 115
           + +      V +   A   +   PV  V +     VL A+ +L  AAR R+ A ++A+TG
Sbjct: 59  LGR-GAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKT TKE L   LS   +T+A   SYNNH GVPLTL RMP    +G+FE+GM+H  EI
Sbjct: 118 SVGKTGTKEALRHVLSEQGETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEI 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  VRP IA+ITTIAPAH+ +F+ +  IA AK EIF GL   G   LN D   F+ L
Sbjct: 178 VPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRL 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A + A     + +FG+  +AD +  K     + S ++  + G+ +       G H A N
Sbjct: 238 AAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAALN 297

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +V  L AD+  A  +L    P  GRG+R    +  G   L+DESYNANP +++A
Sbjct: 298 SLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVRA 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L+ I     GRRIAVLGDM E+G  +   H  LAE +    +  V+ +G  +  L 
Sbjct: 358 ALATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEAARVDLVFTAGPLMRNLF 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +ALP S     ++T   L   +  +L  GD V+VK SN     R++  L   +
Sbjct: 418 EALPVSRRGAVADTAADLLEPLARTLRSGDAVMVKGSNGSRMGRIVEALKARY 470


>gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580]
 gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580]
          Length = 491

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 224/465 (48%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +  +G       +G  + G+S DSR +A  + F  + G  ++GH F   A Q+G
Sbjct: 40  TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEG 99

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ N            PV  VDD L AL KLA A R +    ++ +TGS GKTTTK+
Sbjct: 100 VAAVLWNRSEPNPPEGK--PVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKD 157

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  K +   G+YNNHIG+PLT+  MP D +  I E+GMS  GEI FLT L RP
Sbjct: 158 MIHAVLGTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARP 217

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +HL      E IA AK EI  GL K GT+    D+    LL  + +    
Sbjct: 218 DIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEP---LLTERLNQPPY 274

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T  +FG+    D+QL    Q  E +   V+  G         +G H  +N L  +    
Sbjct: 275 DT-KTFGEDPAFDYQLEDMTQTEEGTAFRVR--GIENGFFIPVLGKHNVKNALAAIAAGD 331

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        +        +  G R           +I+++YNA+P SMKAAI ++ Q+ 
Sbjct: 332 LLNVSRAHIAEG---LTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQMK 388

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
            +  G++I VLGDM E+GE  ++FH ++ + ++  +I  ++  G     +        P 
Sbjct: 389 GY--GKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPE 446

Query: 421 SIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +H+  E  D L   ++     GD+++VK+S       +I  L
Sbjct: 447 HRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 491


>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
 gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
          Length = 458

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 225/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    +     +  +PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKGVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-REENISFYIPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   K L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKKGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEIITMLK 458


>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 461

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 224/474 (47%), Gaps = 18/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GK
Sbjct: 60  IDKGASAVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     + +K 
Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDD----MLSKI 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   Y +G  K+ + +    ++  +     ++ +  + E+     G H   N L  
Sbjct: 236 PLQYSSKYYRYGI-KSGEIKACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P + R    +    +    +    YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV----YNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +      R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               +  ++    T   +   ++  + +GD ++VK S      +++  L E   
Sbjct: 408 VCGMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQERVK 461


>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
          Length = 478

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 205/468 (43%), Positives = 276/468 (58%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LWT   + +A+     G +P+  +NGISIDSR+IAP EA+FAIKG  +DGH F+  A+
Sbjct: 3   TALWTTAAMAEAMHATRSGALPES-INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + G GL V+     A   S  +P+  V DVL  L  LA AAR R++A I+A+TGSVGKT+
Sbjct: 62  KNGGGLAVIAQSQRAKF-SGDLPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+    S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  L
Sbjct: 121 TKEALRTVLQAQGATHVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAGEIEPLVKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+S F  L  ++ A
Sbjct: 181 VRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFARLAERAKA 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I +FG++++AD +L      +E S +   +    +       G HMA N L  L 
Sbjct: 241 CGVARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +++  D+  +  AL+ F P  GRG R+   L  G  TLIDESYNANPASM AA+SVL 
Sbjct: 301 ASTLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +++   +GRRIAVLGDM E+G   +  H  LA  ++   I  V+  G  +  L DALP +
Sbjct: 361 RVAIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFCCGPLMHDLWDALPSA 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               YSET  GL   + + +  GD ++VK S       ++  L + FP
Sbjct: 421 RKGGYSETSVGLESQLVAGVRAGDAIMVKGSLGSRMKVIVTALEKNFP 468


>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 456

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 222/467 (47%), Gaps = 20/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++     G  I   P   VNG+  DSR     + F A++G   DGHDF L A+++G
Sbjct: 4   YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V   +        + V  V D + AL +LA   R R    ++A+TGS GKT+TK+
Sbjct: 64  ATALLVTKTVTVPP---QVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KT    G+YNN +G+PLTL  +       + E+GM   GEI  L  L +P
Sbjct: 121 MIAAVLNTRYKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLLARLAKP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL     ++ IA+AKAE+ + +   G   LN D        ++      
Sbjct: 181 TGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRNQVSRCQG--- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +  +   D   R  +        ++   G + E+     G H   N +  +G+  
Sbjct: 238 -QVWFYSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVGL 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L       ++ L+       R +  +        T+I++ YNANP+S KAA+ VL++++
Sbjct: 297 RLGIPFTDIVRGLAQVELTGMRLEIIK----ANNMTVINDVYNANPSSTKAALKVLAEVA 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALP 419
           P   GR+IAVLG+M E+G L++S H ++ E  +L  ++ +   G         A+K  LP
Sbjct: 353 P---GRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKGGLP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               VH+ +        ++  +  GD ++VK S S     ++  L+ 
Sbjct: 410 -GDRVHHCDNNKLAIEVLRQVMQPGDTILVKGSRSMHMEEIVQALVN 455


>gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 456

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 222/466 (47%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   ++G     V  Q  + G + D+R++   + F  +KG H++GH F+  A +KG
Sbjct: 5   TVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +             V  VDD L AL KLA A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWDRSEPNPPKER--AVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P
Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL + G +F   D+    LL+ K++    
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEP---LLREKAYTC-- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G+  + D +L++ KQ  E ++  +   G         +G H   N +       
Sbjct: 238 -RTTTYGEGADNDLRLKEIKQAEEGTYFTI--DGIDRSFFIPVLGRHNVMNAMGAYAAGI 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A   LS     +  G R      +   ++++++YNA+P SMKAAI ++  + 
Sbjct: 295 YFGITPENAALGLSRL---KVTGMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +   +++ VLGDM E+G+  ++FH +    ++   I HV+  G     + D   +    
Sbjct: 352 GY--RKKMLVLGDMLELGDEEKAFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEE 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +      L   I+ +   GD+++ K+S        +  LLE+
Sbjct: 410 GRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVKDLLEK 455


>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IAEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D +  +      V  V+D L AL+K+A   R +     +A+TGS GK
Sbjct: 60  MTKGAKAVLTARLDNIEYLRDFPFNVIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     + +K 
Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDD----MLSKI 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   Y +G  KN + +    ++  +     ++ +    E+     G H   N L  
Sbjct: 236 PLQYSSKYYRYGI-KNGEIKACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      DVD   + L  F P + R         +G   +ID++YNANP SMKAA++V
Sbjct: 295 ICVGLEFGVDVDDMAEVLKDFQPGKMRLNIIE----KGDIKIIDDAYNANPDSMKAALNV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L         R+IAVLGDM E+GE S   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDFP---GKRKIAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGNTSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD+++VK S      +++  L E 
Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQER 459


>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
 gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
          Length = 487

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/470 (39%), Positives = 267/470 (56%), Gaps = 6/470 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+  A+ 
Sbjct: 5   PLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALD 62

Query: 63  KGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV              L++P  G D VL A+ +L +AAR R++A I+A+TGSVG
Sbjct: 63  KGAGAAVVAEARAKEFEGVGSVLAVPGEGDDPVLDAMRRLGLAARARTEAAIVAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTL RMP    FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     + +FG+   AD +  +     + S ++  + G  +       G H+A N L 
Sbjct: 243 AQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS++AA++
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  L +AL
Sbjct: 363 TLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEAL 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P ++    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 423 PMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 458

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 222/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + + + G  +          G+SID+R +     +  I+G  +DGH F+  A++ G
Sbjct: 5   TLKQIEKMVNGTGLAEKYFDMTAQGVSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     ++  PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWKRDVQNPPANM--PVIFVEDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  D +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEEDTEIAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL++ G    N D+      +     L +
Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPKMDLAV 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +TI +FG ++  D+        +  +   +  + +++      +G H   N L ++ I  
Sbjct: 242 ETI-TFGDARANDYYPTSVTLQATGTHFTMN-RDENVLFYLPVLGKHNVYNALASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKQGLVTLQMT---GMRMEVVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   ++  +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKNLKDIVDMEDVVLVKASRGMKMEEIITMLK 458


>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 479

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 201/468 (42%), Positives = 268/468 (57%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   ++ A+   ++   P   V GISIDSR++AP +A+FAI+G  +DGHDF+  A+
Sbjct: 4   QPLWTSDAIIAAMGA-AVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L VV T           P+  VDDVL  L  L  AAR R  A +IA+TGSVGKT+
Sbjct: 63  KAGAALAVVETAQRGKFAP-DAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +  +T+A + S+NNH GVPLTLAR P  V + +FE+GM+H GEI  L  +
Sbjct: 122 TKEALRGVLGAQGETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+  F+ L A +  
Sbjct: 182 VRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFKRLTASARK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I SFG    AD +LR     ++ S ++  + G  +    +  G H+A N L  L 
Sbjct: 242 AGVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+  A  AL+   P  GRG R    L QG  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                G+GRRIAVLGDM E+G      H  LA  +    +  V+  G  +  L DAL   
Sbjct: 362 SAEISGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCCGPLMHNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+ET   L   + +++  GDV+++K S       ++  L + FP
Sbjct: 422 KRGGYAETAAALESQVVAAVRSGDVLMIKGSLGSRMKTIVTALEKRFP 469


>gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
 gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
          Length = 479

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/470 (43%), Positives = 273/470 (58%), Gaps = 4/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PLWT   L  A+ G  IG  P   + G+SID+R++ P + FFAI+G + DGH ++  A
Sbjct: 4   IEPLWTPDALAAAVGGTLIG-APARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMA 62

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA L VV  D V ++      +  VDDVLGAL     AAR R++A I+ +TGSVGKT
Sbjct: 63  ADRGAALSVVERDRVGTLPE-GAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L +AL +   T+A   SYNNH GVPL+LARMP    +G+FELGM+H GEI  L  
Sbjct: 122 TTKEALLLALGADGPTHASAASYNNHWGVPLSLARMPASSAYGVFELGMNHAGEIEPLVK 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITTI P H++ F  +E IA AKAEIF G+E  G   LN D+  FE L A + 
Sbjct: 182 MVRPHVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGAAVLNRDNPHFERLAAAAR 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A GI+ I  FG++ +A  +L   K  ++ S     + G+++       G H+ QN L  L
Sbjct: 242 AAGIQNIVGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVL 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               ++ AD+  A  ALS   P  GRG R    +  GF TLIDESYNANPASM+AA++VL
Sbjct: 302 AAARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                 G GRR+AVLGDM E+G   ++ H       +  +   V+ +G  + AL +ALP 
Sbjct: 362 GTAPVEGRGRRLAVLGDMLELGPRGEAMHA--DIAPAAASADLVFCAGPLMRALWEALPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +    ++     L   +   L  GDVV+VK SN      L   L+E FPA
Sbjct: 420 NRRGAWAPDARALLPLVAERLRGGDVVMVKGSNGSRMGPLARALVERFPA 469


>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
 gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 222/468 (47%), Gaps = 17/468 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA 
Sbjct: 5   IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAS 64

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            V+    D V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GKTTTK+M
Sbjct: 65  AVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L ++  P 
Sbjct: 125 IAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQ 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T I  AH+      E I  AK E+ E  ++   I LN DD     + +K       
Sbjct: 185 VAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDD----MLSKIPLQYSS 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y +G  K+ + +    ++  +     ++ +  + E+     G H   N L  + +   
Sbjct: 241 KYYRYGI-KSGEIKACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAICVGLE 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +V+   +AL  F P + R    +    +    +    YNANP SMKAA+SVL  +  
Sbjct: 300 FGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV----YNANPDSMKAALSVLRDLPA 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RS 421
               R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +       + 
Sbjct: 356 K---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGMKE 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++    T   +   ++  + +GD ++VK S      +++  L E   
Sbjct: 413 NNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQERVK 460


>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
 gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
          Length = 461

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 212/471 (45%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+    +++ A+ G      P   V  +S +SR + P   F  I G   D H FI  A
Sbjct: 1   MEPI-RICEIVTAVGGALWKGNPNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA       +       L   V  V D   AL + A   R R    ++ +TGSVGK+
Sbjct: 60  LDTGAAACFTQQEPEEGFKYLDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKS 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEM+  ALS  K+ +   G+YN+ IG+PLT+  +    +  + E+GMS+ GE+  L+ 
Sbjct: 120 STKEMIAAALSQGKRVHKTAGNYNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEMERLSA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P  AV+T I  +H+      E I + K  I + + + G ++LN DD   + L+    
Sbjct: 180 IASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRE--- 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  +G   + D++        + +  E+     + +++   +G H   N L  +
Sbjct: 237 -SYTGKIVWYGMESDCDYRAVNIDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAI 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       +D     L  +     R + +         T+ID+SYNA+P S+K+ I VL
Sbjct: 296 AVAYDQGLTLDDIRCGLLTYEGLAMRQQIHEL----DKITVIDDSYNASPDSIKSGIGVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
             ++    G++IAVL DM E+GE S   H++L    +   +  V   G     + +    
Sbjct: 352 --MAVKSTGKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLTVGREAEKIAEGAAE 409

Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             R I V    T D  F  ++  L DGD V+VK S       ++  LL ++
Sbjct: 410 ESRKILVKACGTNDEAFAELEKILNDGDCVLVKGSRGMHTDEIVQKLLTKY 460


>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 459

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 225/462 (48%), Gaps = 13/462 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+ +AI+G+ I   P   + G+S++SR     + FFA+KG  +DGHDF+  A++ GA 
Sbjct: 5   LLDIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGAL 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             VV+  +    G     +  V DV  AL  LA   R R K  ++ +TGSVGKTTTK++ 
Sbjct: 65  AAVVSRPVSLPQGLGERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLT 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  +T    G+YNN IGVPLTL R+    +  + E+ M +LGEI  L  +  P  
Sbjct: 125 ATCLEARFQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELASIALPTC 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  + P HL N   +E IA AK E+F+ +++ G + +N D+    LL   +    +K 
Sbjct: 185 GIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNP---LLVEAAEKYAVKK 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  FG   N D +L      SE++ ++  L G++ E      G H+A N++   G+   L
Sbjct: 242 V-RFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFCLPFPGSHLAYNVIAAAGVAVRL 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+      +  F       +R       G  T+ID+ YNANP SMKA + VLS ++  
Sbjct: 301 GVDLADIQSKIRSFS---PSSRRLNIKTGLGGITIIDDCYNANPVSMKAGLEVLSDVAA- 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----I 422
               R+AVLGDM E+G      H ++    +   +  +   G     + +A   +     
Sbjct: 357 -GRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGELARHIGEAAKEAGLDKE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + +    +    +++S L    VV++K+S       ++  L
Sbjct: 416 RILHFSDKELAIAYLKSDLPAEAVVLIKASRGMHMEDIVQEL 457


>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 466

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 202/466 (43%), Gaps = 16/466 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++     G           V G+  DSR I     F  + G  +DGHDF    +Q G
Sbjct: 5   NLAEIAAMCGGQIREAGDAGIVVQGVVTDSRQITKGCLFVPLAGERFDGHDFASDCLQAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG  +         G    P   VDD L AL  LA +    + A ++ ITGS GKTTTK+
Sbjct: 65  AGACLWALSKGTPPG----PAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS+  K +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI  L+ +  P
Sbjct: 121 LVYALLSTTYKVHKTKGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  +HL      EEIA AK EI  G++  G    N D+     + A+   +  
Sbjct: 181 ETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLAEPSTVKP 240

Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +     +FG     D           Q+            +    +G H   N L  + +
Sbjct: 241 EGLQTATFGLRPENDQYPTGILFTDHQTLFTPHGSEGD-PLELPLLGEHNVSNALAAITV 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                            F   E  G R      +   T+++++YNA+P SMKAA+ VL  
Sbjct: 300 ARHYGVGEAAI---REGFSKVELTGMRIEVITGRSGITILNDAYNASPTSMKAALGVLEH 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  +   ++IAVLGDM E+G+    +H ++ E+L+   +  ++  G     + +   + +
Sbjct: 357 MKGY--RKKIAVLGDMLELGDSEADYHREIGEMLTPGTVDQLFTCGPLSRHIAEGAKKQL 414

Query: 423 H---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +H       L   + S L   DVV+VK+S       ++  + 
Sbjct: 415 DPNFIHAYTDKSELIRKLVSLLHPQDVVLVKASRGMKLEEVVEAIK 460


>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
 gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
          Length = 487

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/470 (40%), Positives = 267/470 (56%), Gaps = 6/470 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+  A++
Sbjct: 5   PLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62

Query: 63  KGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV      +   +   L++P  G D VL A+ +L +AAR R+ A I+A+TGSVG
Sbjct: 63  KGAGAAVVAEARAKEFEGAGPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIVAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTL RM  D  FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMLEDTRFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     + +FG+   AD    +     + S ++  + G  +       G H+A N L 
Sbjct: 243 AQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS++AA+S
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALS 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  L +AL
Sbjct: 363 TLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEAL 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P  +    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 423 PMPVRGTAAPTAEGVTDAVLATLRSGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
 gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
          Length = 461

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 214/468 (45%), Gaps = 18/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +  ++  A+ G  I   P+  +  ISIDSR+I P + F AI G  +DGH FI  A
Sbjct: 1   MIPM-SLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           V KGA  ++V+  + A  G   + +  V+D   AL  LA   R+  K  T+I ITGS GK
Sbjct: 60  VSKGARALIVDHSIKAYPG---VGIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L          G+ NN+ G+PLTL  +  D +  + E+GMS LGEI  L 
Sbjct: 117 TTTKDMIASVLKEKYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIELLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT + P HL N   +  +A  K E+ EGL   G   LNYD+ +   +K   
Sbjct: 177 SISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDMKDYV 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                K +  +G S  AD      K    ++        + +   +     G H   N L
Sbjct: 237 EG---KKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERITLQKPGKHNVYNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L  D           +  +    R+         TLI+++YNANP SMKAAI
Sbjct: 294 AAIAVARYLRVDWGGIKNG---LYNIDLSSLRWDVRDLGNEITLINDTYNANPLSMKAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                I+     R I VLG M E+G++ +  H+DL   ++  N+  +   G        +
Sbjct: 351 EATFDIAQE---RVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGELGRLTARS 407

Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +    +V+ ++        +   +  GD ++VK S       ++ +
Sbjct: 408 AEKEGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKMEEIVKM 455


>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 458

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 223/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIA- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 -ETVTFGDARANDYYPTTVALQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                ++I VLGDM E+G     FH ++ +++    I++V+  G     + +    +   
Sbjct: 357 GF--AKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFTYGKLGAQIAEGAKINFPI 414

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
 gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
          Length = 460

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 218/468 (46%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L   I G           + G+SID+R+I     +  IKG  ++GH F+  A++ G
Sbjct: 5   TLTQLATMIPGSVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + N D         I V  VDD L AL +LA + R      ++ ITGS GKTT K+
Sbjct: 65  ALATLWNKDEENPPTD--ISVILVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  +     G++NNHIG+PLT+ R+    D  + E+GMS  GEI FL++L  P
Sbjct: 123 MVKAVLDTTYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL +    + IA AK EI  GL  TG +  N D+    LL ++      
Sbjct: 183 DVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEP---LLTSRVVNPVF 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG S+  D            +   V  +  +       +G H   N L  + +  
Sbjct: 240 ETV-TFGSSEQNDLYPSAISAEELGTTFTVS-RETTYPFFIPVLGKHNVHNALSAIAVGH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D +T  K L           R          T I+++YNA+P S+KAAI+++  + 
Sbjct: 298 YFGLDNETIAKGLKELKLTN---MRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDLE 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            + +  +I VLGDM E+G+  + FH ++ E +    I +V   G   + ++     +   
Sbjct: 355 GYKQ--KILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAE 412

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             V + E  D L   + +     DVV+VK+S       +I+ ++ + P
Sbjct: 413 DKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460


>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 456

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 222/466 (47%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   ++G     V  Q  + G + D+R++   + F  +KG H++GH F+  A +KG
Sbjct: 5   TVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +             V  VDD L AL KLA A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWDRSEPNPPKER--AVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P
Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL + G +F   D+    LL+ K++    
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEP---LLREKAYTC-- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G+  + D +L++ KQ  E ++  +    +S       +G H   N +       
Sbjct: 238 -RTTTYGEGADNDLRLKEIKQGEEGTYFTIDSIDRSF--FIPVLGRHNVMNAMGAYAAGI 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A   LS     +  G R      +   ++++++YNA+P SMKAAI ++  + 
Sbjct: 295 YFGITPENAALGLSRL---KVTGMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +   +++ VLGDM E+G+  + FH +    ++   I HV+  G     + D   +    
Sbjct: 352 GY--RKKMLVLGDMLELGDEEKVFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEE 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +      L   I+ +   GD+++ K+S        +  LLE+
Sbjct: 410 GRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVKDLLEK 455


>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
 gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
          Length = 456

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 224/465 (48%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +  +G       +G  + G+S DSR +A  + F  + G  ++GH F   A Q+G
Sbjct: 5   TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ N            PV  VDD L AL KLA A R +    ++ +TGS GKTTTK+
Sbjct: 65  VAAVLWNRSEPNPPEGK--PVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  K +   G+YNNHIG+PLT+  MP D +  I E+GMS  GEI FLT L RP
Sbjct: 123 MIHAVLGTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +HL      E IA AK EI  GL K GT+    D+    LL  + +    
Sbjct: 183 DIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEP---LLTERLNQPPY 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T  +FG+    D+QL    Q  E +   V+  G         +G H  +N L  +    
Sbjct: 240 DT-KTFGEDPAFDYQLEDMTQTEEGTAFRVR--GIENGFFIPVLGKHNVKNALAAIAAGD 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        +        +  G R           +I+++YNA+P SMKAAI ++ Q+ 
Sbjct: 297 LLNVSRAHIAEG---LTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQMK 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
            +  G++I VLGDM E+GE  ++FH ++ + ++  +I  ++  G     +        P 
Sbjct: 354 GY--GKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPE 411

Query: 421 SIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +H+  E  D L   ++     GD+++VK+S       +I  L
Sbjct: 412 HRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 456


>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
 gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
          Length = 455

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 220/465 (47%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + + ++G           + G++ D+R +   + F  + G +++GH F+  A + G
Sbjct: 5   TAKKIAEMVKGTLTDPTYENIVIQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ N             V  VDD LGAL +L+ A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWNKSEPNPPQDQ--AVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI  LT L  P
Sbjct: 123 MLHAVLQTQFRVHKTEGNFNNHIGLPLTVLSMPEDTEVAVLEMGMSGKGEIDLLTRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL+K G +    D+    LL  +S++   
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYIGDEP---LLNKRSYSCRT 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   +FG  +  D+QL   KQ  + +   +  +G         +G H   N +       
Sbjct: 240 K---TFGADEGNDYQLEDVKQTEDGTHFSI--KGIDKTFFIPVLGKHNVLNAIAAFAAGI 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+ A K LS     +  G R     ++   ++I+++YNA+P SMKAAI ++  + 
Sbjct: 295 HFGITVENAAKGLSGL---KVTGMRLELLKSESGVSIINDAYNASPTSMKAAIELIESM- 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G G+++ VLGDM E+G+L Q FH +   V++   I +V+  G     +     R    
Sbjct: 351 -EGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYVFTYGKLGAFIAAGAHRHFDQ 409

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   +      GD+++ K+S       ++  L++
Sbjct: 410 ERVSHFNDKAELLQAVAEKAEKGDLILFKASRGMKLEEIVKDLMK 454


>gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 457

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 222/462 (48%), Gaps = 18/462 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++++A+ G  I        + ++ DSR +   + F  + G  +DGHD+I+ + ++G   
Sbjct: 7   KEIVKAVNGVLISGDLNTEFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQGVSG 66

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +   D     G +   V  V+D L AL  L+   R +     + ITGSVGKT+TK+M++
Sbjct: 67  CLTQKDTAGYEGKV---VIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTKDMVS 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+         G++NN IGVPLT+  +    +  + E+GMS  GEI  LT +V+P IA
Sbjct: 124 SVLNKKFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTSIVKPDIA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +H+      + I  AK EIFEGL+  G + LN DD+    LK   + L  +T+
Sbjct: 184 IITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLK---NLLNYRTV 240

Query: 248 YSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +G     D+Q        E  +  E+ +  ++ +V     G H   N L  +     L
Sbjct: 241 F-YGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAIAAGIEL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V   I+ +  F P + R        +     +I+++YNA+P SM+AAI+VL  I+  
Sbjct: 300 NIPVKDIIEGIGEFSPGKMRLNIM----DHNGIKIINDAYNASPQSMEAAINVLKDIAGD 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSI 422
              R IAVLGDM E+G+++   H+ + +      +S++   G +   + +          
Sbjct: 356 N--RTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAVGENGKNIAEGALKAGAEEA 413

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            V + +       F+      GDV+VVK S       ++NLL
Sbjct: 414 RVFHFKDNSEAGKFLLDFTKPGDVLVVKGSRGMKMEEIVNLL 455


>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 146/471 (30%), Positives = 230/471 (48%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T  D+L+A +G  I    +  V+ IS DSR+I   + F A+KG  +DGH+F+  A
Sbjct: 1   MSLNLTVEDILKATKGILIKGNFKDKVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+ D+     +    +  V D L AL  +A        A +I ITGS GKT
Sbjct: 61  ILKGAKGVIVSRDVNLEDKAF---IIKVQDTLKALQDIANYYLKTLNAKVIGITGSSGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK ++   L  I K Y    ++NN IGVPL++     DVDF + E+ M   GEI  L+ 
Sbjct: 118 TTKNLVGRLLKLIGKVYVSKENFNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLLSK 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P I VIT I  AH+      E I  AKAEIF+ +++ G   LN DDSF   +  + H
Sbjct: 178 IAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYERLH 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMT 299
                  Y+FG  + +D +     +  E   + +    GK + +       ++ +N+L  
Sbjct: 238 IKK----YTFGFEEGSDLRGLILDKGKESYTLGLYFPDGKRLTLSLPVYPLNIYRNLLSA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++       ++  +    F     + +R     N+    +ID++YNANP SMK AI  
Sbjct: 294 LLVLWS--ISPESIYRVKEDFDFTLPK-QRLDVKRNKDGLVIIDDTYNANPDSMKTAIEY 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR++A+LGDM E+G  S   H ++ E +   NI  + L G  +    D   
Sbjct: 351 LELLD--VPGRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVLYGQEMKKALDEFE 408

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +     VH+S+  + +   ++ SL   D V++K S +      +  L +E+
Sbjct: 409 KIDWSKVHWSDNPEEIKSILRRSLQPKDTVLIKGSRAMRMEDFVKFLEDEY 459


>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
 gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
          Length = 460

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 213/468 (45%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L   I G           + G+SID+R+I     +  IKG  ++GH F+  A++ G
Sbjct: 5   TLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + N D         I V  VDD L AL +LA + R      ++ ITGS GKTT K+
Sbjct: 65  AVATLWNKDEENPPTD--ISVILVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  +     G++NNHIG+PLT+ R+    D  + E+GMS  GEI FL++L  P
Sbjct: 123 MVKAVLDTTYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL +    + IA AK EI  GL  TG +  N D+     L        +
Sbjct: 183 DVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEP----LLTSRVVNPV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG S+  D            +   V  +  +       +G H   N L  + +  
Sbjct: 239 FETMTFGSSEQNDLYPSAISAEELGTTFTVS-RETTYSFFIPVLGKHNVHNALSAIAVGH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D +T  K L           R          T I+++YNA+P S+KAAI+++  + 
Sbjct: 298 YFGLDNETIAKGLKELKLTN---MRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDLE 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            + +  +I VLGDM E+G+  + FH ++ E +    I +V   G   + ++     +   
Sbjct: 355 GYKQ--KILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAE 412

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             V + E  D L   + +     DVV+VK+S       +I+ ++ + P
Sbjct: 413 DKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460


>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 486

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 185/464 (39%), Positives = 260/464 (56%), Gaps = 1/464 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   L+  +Q    G VP     GISID+R++   + FFAIKG + DGHD++  A  K
Sbjct: 15  LWTPLGLVTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAK 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+      + +   P++ V +VL AL +L  AAR R +A ++A+TGSVGKT+TK
Sbjct: 75  GAMAAVVDEAHADRLAAHG-PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTK 133

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L+     +A + SYNNH GVPLTLARMP D  FGIFE+GM+H GEI  L  +VR
Sbjct: 134 EALRLVLTQGGSVHASVASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGEITPLVGMVR 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+AP HL  F  +E IA AKAEIF GL   G   ++ D   FE L   +    
Sbjct: 194 PHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPGGVAIIHRDIPQFERLAEAARHSP 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG  + AD +L      S+ S ++  +QG+++       G H A+N L  L   
Sbjct: 254 AGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVLLAA 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ A   L+   P+ GRG++       G F LIDESYNANPASM+AA+ +   +
Sbjct: 314 KACGVPLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMAGTL 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G GRRIA+LGDM E+G  +   H  LA++L       V+ +G  +  L DALP  + 
Sbjct: 374 PLEGVGRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAGPLMRHLYDALPSGLR 433

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +    + L   + +++   D+V+VK SN      L+  L ++
Sbjct: 434 GEWRAKAEDLVPIVGATVQRNDIVLVKGSNGSRMKLLVESLKDK 477


>gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
 gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
          Length = 458

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/442 (30%), Positives = 210/442 (47%), Gaps = 12/442 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V+G+ IDSR I     +  + G H DGH ++  A ++GA   +   D+     +  +
Sbjct: 25  ETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQKDVPNPPAN--V 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+D   +L +L+ + R   +A ++ ITGS GKTTTK+M+   LS   K     G++
Sbjct: 83  PLLIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFKVQKTEGNF 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTL  +  D +  + E+GMS  GEI FLT + RP +A+IT I  AH+ N    
Sbjct: 143 NNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGSR 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK EI EGL + G +    D+    LL+ +   +      +FGK    D    +W
Sbjct: 203 EAIADAKLEITEGLPENGLLIYMGDEP---LLQERVPNITGIRTKTFGKGHGNDLYPVEW 259

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           KQ +  S       G  ++     +G +   N L  +          +      +     
Sbjct: 260 KQETSGSTFRTNASG-DIDFYLPVLGEYNVINSLAAILAGREFGMPFEEI---RAGLGKT 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R   A       +I+++YNA+P SM+AAI ++ Q    G GR+I VLGDM E+GE
Sbjct: 316 RLSAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQF--EGTGRKILVLGDMLELGE 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLV 442
              +FH ++   L+   I  V+  G     + +A       V   E    L   ++  + 
Sbjct: 374 KEAAFHREVGRDLNPEKIDFVFTYGKLGRLIAEACDFPDNRVFAFEDKKRLIDMLKGKIG 433

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            GD+V+VK+S       ++  +
Sbjct: 434 AGDLVLVKASRGMQLEEVVKAI 455


>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 477

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 184/468 (39%), Positives = 258/468 (55%), Gaps = 4/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  ++ +A+            V G+SIDSR++   + F AIKG   DGH FI  A 
Sbjct: 8   KPLWTGAEIARALG--IAPPAADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAF 65

Query: 62  QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             GA   +V+ D    +  +   P+F VDD   AL +L   AR R+ A I A+TGSVGKT
Sbjct: 66  DNGAAGALVSRDYAPQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKT 125

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L     T+A + SYNN +GVPL+LARMP    FG+FE+GM+H GEI  L  
Sbjct: 126 TTKEMLRVMLGESGPTHASVKSYNNFMGVPLSLARMPAASRFGVFEIGMNHAGEIVPLAK 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++T +AP H+  F+   EIA AKAEIFEGLE+ G   L  D+  FE L A + 
Sbjct: 186 LVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPADNPHFESLAAFAR 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + +  FG S  A+ +L  +++  E S +   +  + +       G H+AQN +  L
Sbjct: 246 ERSAR-VVPFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPGRHLAQNAVAAL 304

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             VS+L  +V+ A  AL+ F   EGRG+       +G   +IDESYNANPASM AA+ VL
Sbjct: 305 AGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNANPASMHAALDVL 364

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             + P    RRIAVLGDM E+G  +  FH  LA  +    I  V+ +G  + +L ++LP 
Sbjct: 365 GAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVFCAGPLMASLHESLPA 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                ++   + L   +  ++  GD V++K S      ++   L   F
Sbjct: 425 EKRGGWANASEDLRGPVLDAVCGGDAVMIKGSLGSRMGQIAEALKARF 472


>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
 gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
          Length = 460

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 132/460 (28%), Positives = 209/460 (45%), Gaps = 14/460 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G           V+G+S D+R+I     +  + G  ++GH F+  A QKG
Sbjct: 5   TVQQIAEMTGGRYANPEWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+          S  +P   VDD L AL +LA   R +    ++ +TGS GKTTTK+
Sbjct: 65  AAAVLWAEAEGTPPES--VPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LSS  +     G+ NNHIGVPLTL  +    D  + E+GMS  GEI  LT + RP
Sbjct: 123 MIAALLSSQYRVQKTEGNLNNHIGVPLTLLALEEGTDIAVVEMGMSGFGEIEQLTTIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + AVIT I  AHL      E IA AK EI  GL+  G    + D+     L         
Sbjct: 183 NAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYHGDEPLLAELVPSLPLP-- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG+ ++ D+     +  +  +   +  +     +    +G H   N L  + +  
Sbjct: 241 QHVVTFGEGEDNDYYPTTVRIEAAGTSFVIN-ELPRQTLFIPVLGKHHVYNALAAIAVAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    ALS          R      +  FT+I+++YNA+P SM+AA+ +L+++ 
Sbjct: 300 FFGVSWENIAAALSRLQVTR---MRTEVVKTKRGFTVINDAYNASPTSMRAALMLLTELD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRS 421
            +   ++IAVLGDM E+G+    FH  + E+L    + +V+  G     +  A       
Sbjct: 357 GY--RKKIAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYGPLARHIATAATPFFDQ 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             V   +    L   + S     D+V++K+S       L+
Sbjct: 415 GQVKAFDDKAALAEAVLSVATPDDIVLLKASRGMRLEELL 454


>gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 481

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 222/465 (47%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 29  TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFEAG 88

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +     +    V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 89  VAAVLWDRSVPNPPENH--AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 146

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 147 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +      +A   
Sbjct: 207 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ------NAYSC 260

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T  ++G   + D+QL+   Q  E +   +  +G         +G H   N +  +   +
Sbjct: 261 QT-KTYGTGAHNDYQLQDVSQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGA 317

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A K LS     +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 318 YFGITPEGAAKGLSGL---KVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +        
Sbjct: 374 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKQFEK 432

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 433 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 477


>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
 gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 228/472 (48%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A QG  I    +  + GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IAEIVRATQGKLIKGSLKDKIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D +  +      +  V+D L AL+K+A   R +     +A+TGS GK
Sbjct: 60  MTKGAKAVLTARLDNIEYLKDFPFNIIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  + 
Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLLKILQQY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +      Y +G  K+ + +    ++  +     ++ +    E+     G H   N L  
Sbjct: 240 SS----KYYRYGI-KSGEIKACDIEKGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      DVD   +AL  F P + R         +G   +ID++YNANP SMKAA++V
Sbjct: 295 ICVGLEFGVDVDDMAEALKDFQPGKMRLNIIE----KGDIKIIDDAYNANPDSMKAALNV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L         R+IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDFP---GKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNTSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD+++VK S      +++  L E 
Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQER 459


>gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [polymorphum gilvum SL003B-26A1]
 gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polymorphum gilvum SL003B-26A1]
          Length = 476

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 205/469 (43%), Positives = 277/469 (59%), Gaps = 2/469 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT    + A  G  +G VP G + GISIDSR++ P +AF AI+G  +DGHDF+  A+
Sbjct: 3   QPLWTRDAFVDATGGSVLGDVP-GAIGGISIDSRTLQPGDAFVAIEGERFDGHDFVAAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L +V  D +  + +       VDD L AL  LA AAR RS A I+A+TGSVGKT 
Sbjct: 62  EAGAALALVARDRLERLPADG-RYVVVDDPLEALRGLARAARARSHARIVAVTGSVGKTG 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L +AL    +T+A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEI  L  L
Sbjct: 121 TKEALRLALERSGRTHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHAGEITPLVAL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  F  +E+IA AKAEIF GLE  G   LN D++ F+LL   +  
Sbjct: 181 VRPHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPGGVAILNRDNAQFDLLTFLARN 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I +FG+   AD   ++    +  S ++ ++ G+ +       G H+ +N L  L 
Sbjct: 241 AGVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLL 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V  L AD+  A  AL      +GRG + R  L  G  TLIDESYNANPASM+AA+ VL 
Sbjct: 301 AVVELGADLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQVLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  GRRIAVLGDM E+GE + + H  L E ++   +  V+ +G H+  L + LP  
Sbjct: 361 DAQVSPPGRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRRLWELLPVH 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               Y+E   GL   ++  L  GDVV++K S       L+  L +E+PA
Sbjct: 421 RRAAYAEEAAGLAAMLKEDLRPGDVVMIKGSLGTRMGPLVEALKQEYPA 469


>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 481

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 222/465 (47%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 29  TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 88

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +     +    V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 89  VAAVLWDRSVPNPPENH--AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 146

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 147 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +      +A   
Sbjct: 207 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ------NAYSC 260

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T  ++G   + D+QL+   Q  E +   +  +G         +G H   N +  +   +
Sbjct: 261 QT-KTYGTGTHNDYQLQDVSQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGA 317

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A K LS     +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 318 YFGIAPEDAAKGLSGL---KVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +        
Sbjct: 374 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 432

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 433 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 477


>gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
 gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
          Length = 478

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/467 (44%), Positives = 271/467 (58%), Gaps = 2/467 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   + +A+    +G +P+G V GISIDSR+IAP EA+FAIKG  +DGH F+  A++ 
Sbjct: 5   LWTIAAMAEAMSAERVGALPEG-VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G G+ V+     A      +P+  V DVL  L  LA A+R R+ A IIA+TGSVGKT+TK
Sbjct: 64  GGGVAVIAQSHRAEFPD-DLPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   L +  KT+A   S+NNH GVPL+LAR P    F IFE+GM+H GEI  L  LVR
Sbjct: 123 EALRTVLQAQGKTHASAASFNNHWGVPLSLARCPSSARFAIFEIGMNHAGEIEPLVKLVR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+S F  L+ K+ A G
Sbjct: 183 PHLAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKAKASG 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  I +FG++  AD +L       E S +   L    +       G HMA N L  L   
Sbjct: 243 VSRIVTFGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSLAVLAAT 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++  AD+  +  AL+ F P  GRG R    L  G  TLIDESYNANPASM AA++VL Q 
Sbjct: 303 TLAGADLALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPASMTAAMNVLGQT 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    GRRIAVLGDM E+G   +  H  LA  ++   I  V+  G  + AL DALP +  
Sbjct: 363 AIGPRGRRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMRALWDALPSAKK 422

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             Y+E    L   + + +  GD ++VK S       ++  L + FP+
Sbjct: 423 GGYAEDSAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFPS 469


>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 457

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 222/465 (47%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG H++GH F+  A + G
Sbjct: 5   TVKNIAKMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +        +    V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 65  VAAVLWDRSEPNPPENQ--AVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI  L+ L  P
Sbjct: 123 MIHAVLGTRYRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+     L  K+++   
Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEP----LLQKTYSCQT 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   ++G     D+QL+   Q  E +   +  +G         +G H   N +  +   +
Sbjct: 239 K---TYGAGAQNDYQLQDVSQSEEGTHFTI--KGMEKTFFIPILGKHNVMNAMAAIAAGA 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A K LS     +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 294 YFGITPEDAAKGLSGL---KVTGMRLELIKTDSGISIINDAYNASPTSMKAAIQLTESL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +        
Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFTYGKLGAFIAEGALKHFEK 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 409 ERVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
          Length = 457

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/471 (31%), Positives = 237/471 (50%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + +A  G  I    +  +  I IDSR +   + F AI G   DGH+FI  A
Sbjct: 1   MESL-TLAQIAEAASGKIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           V+ GA  V+V+  +       ++ V  VDD   AL  +A   R++ K   I AITGSVGK
Sbjct: 60  VENGAKAVIVDRQIN---DYSNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+M+   L+   KT    G+YNN IG+PLTL R+    +F + E+GMS  GEI  L 
Sbjct: 117 TSTKDMIAAVLAQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP IAVIT + PAH+     IE +A+AK E+ + L+K+GT  LNYD+ +   +    
Sbjct: 177 ELARPQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAENF 236

Query: 240 HALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++     + +FG S  AD Q+   K+ +   +   ++  QGK ++   +  G H   N L
Sbjct: 237 NS----KLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYLNKPGKHNIYNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I  +   +       LS     +    R      +    +I++SYNANP S++AA+
Sbjct: 293 AAIAIGFLNNMNPKGIQDGLSKIDFSDL---RMEIKELENGAIVINDSYNANPISVRAAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+++      R+IAVL  M E+G++ +  H+++ E ++  NI  +   G     + + 
Sbjct: 350 DVLAEMK---GKRKIAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLITVGEIAELIAEG 406

Query: 418 LPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             R+      ++          F++ +L   D++++K S S    +++  L
Sbjct: 407 AERTAMPVEKIYSFADKASTLKFLKDNLKKDDLLLIKGSRSNQMEKIVAEL 457


>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 455

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 215/472 (45%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++  A  G  +G        V  I  DSR       F AI G H DGH FI 
Sbjct: 1   MKNL-TLENIAGACGGAYVGSDADRSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
               +GA  V+       + G    P   V+  L AL  +A   R +    ++ ITGSVG
Sbjct: 60  QVYAQGALCVLCEKAPAEAQG----PYILVESTLKALMAIAEFYRQQLDIKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   LS   +     G++NN +G+PLT+ ++  + +  + E+G++H GE+  L
Sbjct: 116 KTSTKEMIASVLSEKYRVLKTPGNFNNELGLPLTVFQLTEEDEVAVLEMGINHFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + RP + VIT I   HL      + +  AK+EIF+ +   G I LN DD     LK  
Sbjct: 176 SKIARPDVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKE- 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +   T   FG       +    +    +     +    +S  V     GYHM  N L
Sbjct: 235 ---VRGITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTESFAVTIPIPGYHMVLNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   ++   + +       GR +        G  T++D+ YNANP SMKA++
Sbjct: 292 AATAVGRALGMSLEEIRRGIEKLQALGGRFRILE----AGGITVVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR+IAVLGDM E+GE  Q  H ++    +  +I   +  G     + + 
Sbjct: 348 GVLADAP----GRKIAVLGDMGELGENEQQLHGEVGRFAAGLDIPVFFCVGALCRYMAEE 403

Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + R      V  +++++ +   +  S+  GD V+VK+S++  F +++  L +
Sbjct: 404 IRRLSPEKQVITADSVEEVLRLLPDSVQKGDTVLVKASHAMHFEKIVEALTK 455


>gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 455

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 217/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  G
Sbjct: 3   MQLAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  AEATLWKKGH--EGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM H G++  L+ LVRP
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDHPGQLHHLSELVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   E   AK      
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKIKQEKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +        ++     +  EV   G + +     IG H   N L  + +  
Sbjct: 239 ----TFGFREEDTVFATTFRSYMHHATFEV--NGSTQQFKIPMIGKHNVSNALAAISVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +   +AL+ F P      R +         ++D+ YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGENDEQIAQALANFTPTA---NRMQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVM 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL      
Sbjct: 350 VEDGGRRIAVLGDMLELGDESADLHASLATSLDPAIINELYLYGPEMKNLYDALVDKYPA 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 410 ENLHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
 gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 219/466 (46%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   ++G        Q  + G + D+R++   + F  +KG H++GH F+  A +KG
Sbjct: 5   TVKRIADMVKGTLTNPEFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +             V  VDD L AL  LA A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWDRSEPNPPEGR--AVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P
Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL + G +F   D+    LL+ K++    
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEP---LLRQKTYTC-- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   + D +L++ KQ  E ++    + G         +G H   N +       
Sbjct: 238 -RTTTYGAGADNDLRLKEIKQAEEGTYF--NIDGIDRSFFIPVLGRHNVMNAMAAYAAGI 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A   LS     +  G R      +   ++++++YNA+P SMKAA+ ++  + 
Sbjct: 295 YFGITPENAALGLSRL---KVTGMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +   +++ VLGDM E+G+  ++FH +    ++   I HV+  G     + D   R    
Sbjct: 352 GY--RKKMLVLGDMLELGDEEKAFHEECGAAVNPAEIDHVFTYGTLGAFIADGARRHFEE 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +      L   IQ     GD+++ K+S       ++  LLE+
Sbjct: 410 GRVSHYLDKKELLHAIQEMAASGDLLLFKASRGMKLEEIVKDLLEK 455


>gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 457

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 224/467 (47%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  ++L A +G  +       V+GIS DSR+I P + F  +KG  ++G  FI  A+  
Sbjct: 2   ILTVKEILDATEGKLLSGDINICVSGISTDSRTIKPGDLFIPLKGERFNGEKFIDDALNV 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+  +  +T+ +        P+  V+D   AL+++A   R +     IA+TGS GKTTTK
Sbjct: 62  GSASLTESTNCIRHDNK---PIIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS        IG++NN IG+PLTL  +  D D  + E+GMS  GEIR L ++  
Sbjct: 119 DMIYDVLSMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEIRRLKNIAS 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++AV T I  AH+      E I  AK+E+ E  +   T+ +N DD     +  K     
Sbjct: 179 PNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEK----K 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G + N D +    +   E S  +V + G  ++V  +  G H   N L  + I 
Sbjct: 235 GPKFVTYGIN-NGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAICIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +   KAL+ F P   R      A       +I++ YNANP+SMKAA+SVL   
Sbjct: 294 IQFDVNKEDIRKALAKFQPSAMRLNIIDVA----GIKIINDVYNANPSSMKAALSVLGGY 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----P 419
           +   E R++AVLG+M E+G+     H ++ E +   +I  +   G + L + D       
Sbjct: 350 T---ERRKVAVLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYALKIADGAIEKGM 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +V            I++ + + D+ +VK S       ++  L E
Sbjct: 407 NNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGMEMEEIVKFLQE 453


>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU028]
          Length = 451

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 215/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S G+   P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENKYSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + +  +        +E     +    +        +G H  +N  + + I   
Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTIN---QKEHYHLPILGTHNMKNAAIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R +R+  + N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNN---VTVINDAYNASPTSMKAAIDTLSGM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+    +   
Sbjct: 353 --KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y +  + L   + S +   D V+VK S       +++ LL
Sbjct: 411 KYFDNKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 451

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 216/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHFKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S G+   P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENKHSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + ++ +        +E     +    +        +G H  +N  + + I   
Sbjct: 241 KLISIGLNSDSTYTCHMNDVKNEGIHFTIN---QKEHYHLPILGTHNMKNAAIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R +R+  + N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+    +   
Sbjct: 353 --KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y +  D L   + S +   D V+VK S       +++ LL
Sbjct: 411 KYFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEIVDALL 451


>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
 gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 457

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 222/465 (47%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 5   TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +     +    V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 65  VAAVLWDRSVPNPPENH--AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 123 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +      +A   
Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ------NAYSC 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T  ++G   + D+QL+   Q  E +   +  +G         +G H   N +  +   +
Sbjct: 237 QT-KTYGTGTHNDYQLQDVSQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGA 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A K LS     +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 294 YFGIAPEDAAKGLSGL---KVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +        
Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 409 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 451

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 216/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S G+   P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENKHSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + ++ +        +E     +    +        +G H  +N  + + I   
Sbjct: 241 KLISIGLNSDSTYTCHMNDVKNEGIHFTIN---QKEHYHLPILGTHNMKNAAIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R +R+  + N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+    +   
Sbjct: 353 --KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y +  D L   + S +   D V+VK S       +++ LL
Sbjct: 411 KYFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Paenibacillus polymyxa SC2]
 gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus polymyxa SC2]
          Length = 467

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QK 63
           T   +     G        +  V G+  DSR       F  + G  +DGH ++   V ++
Sbjct: 4   TIGQIASMCGGTLHAEADAERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSER 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D  A     ++    V+D L AL  LA A    +  +++ ITGS GKTTTK
Sbjct: 64  GATAYLWQKDHGAPP---TVNAIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L +  K +   G+YNNHIG+PLT+  MP D D  + E+GMS  GEIR L ++ +
Sbjct: 121 DIVNALLGTTFKVHKTEGNYNNHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL       EIA AK EI  G++  G +  N D+     + A+   + 
Sbjct: 181 PDVAVITNIGESHLLQLGSRTEIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVK 240

Query: 244 IK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +   +++FG + + D    +     E S   +  Q          +G H   N L  L 
Sbjct: 241 PEGLELFTFGLAADNDDYPTEITSDGEGSLF-ITAQSGQEAFRLPLLGQHNVVNGLAALA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D D   K LS        G R          T+++++YNA+PASMKAAI  LS
Sbjct: 300 VARHFNVDADHIRKGLSSLKLT---GMRIEVVKCSDGLTVLNDAYNASPASMKAAIQTLS 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  GR+IAVLGDM E+G   + FH ++    + +NI  ++  G    ++      +
Sbjct: 357 AYKT--GGRKIAVLGDMLELGAEEKQFHEEIGRFAAKHNIEALFTYGALGASIAQGAQGT 414

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +VH       L   ++S L   D+V+VK+S       +++ L  
Sbjct: 415 MPTANVHAYTDKQKLIQHLRSYLHADDIVLVKASRGMRLEEIVDALKN 462


>gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
 gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
          Length = 498

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 193/463 (41%), Positives = 262/463 (56%), Gaps = 2/463 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LWT  D   A  GH  G        G++IDSR +AP + F AI+GP++DGH F+  A+
Sbjct: 5   TVLWTARDAAAATGGHLTG-PSAWAATGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGAAL 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +V+           + +  V D L A+  + V AR    A II +TGSVGKT 
Sbjct: 64  AAGAVAALVDHPPDGLPADAPLLIAPV-DPLEAMAAMGVVARANCGARIIGVTGSVGKTG 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS+   TYA  GS NNH GVPL+LAR+P D  +G+FELGM+H GEI  L+  
Sbjct: 123 TKETLRHVLSAQGATYATEGSLNNHWGVPLSLARLPADSAYGVFELGMNHAGEIGPLSRQ 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+PH+A+ITT+  AHL  FSG+E IA AKAEIFEGL+  G   LN D+  +  L A +  
Sbjct: 183 VKPHVAIITTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAAARR 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  ++ FG  + AD +L      +  S +   ++G+ ++      G H   N L  L 
Sbjct: 243 HGLSHVWGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSVLL 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V  L  DV TA +ALS     +GRG R R  L QG FTLIDESYNA+PA+M A + VL 
Sbjct: 303 AVKALGGDVATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEVLG 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I P   GRR+AVLGDM E+G+ + + HI LAE L    +  V   G H+ AL D LP +
Sbjct: 363 KIDPGAGGRRVAVLGDMRELGDRADALHIALAEPLRAAQVDTVHACGPHMRALFDRLPEA 422

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   ++ET   L   + + +  GDV++VK S       +++ L
Sbjct: 423 MRGVWTETSVELAPIVAAGVKGGDVIMVKGSLGSRTGLIVDAL 465


>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
 gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
          Length = 457

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 222/465 (47%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 5   TVKNIAEMVEGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +     +    V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 65  VAAVLWDRSVPNPPENH--AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 123 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +      +A   
Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ------NAYSC 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T  ++G   + D+QL+   Q  E +   +  +G         +G H   N +  +   +
Sbjct: 237 QT-KTYGTGTHNDYQLQDVSQSEEGTHFTI--KGIEKTFFIPILGKHNVMNAMAAIAAGA 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 + A K LS     +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 294 YFGIAPEDAAKGLSGL---KVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +        
Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 409 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 458

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/465 (26%), Positives = 203/465 (43%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++  AI+   +          +  DSR I P   F A+KG  +D HDF+  A+Q G
Sbjct: 4   MTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V+             +  VDD L AL +LA   R +    ++A+TGS GKTTTK+
Sbjct: 64  AHGVIVSRMQHDLPDGD---ILLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +       +G++NN IG+PLTL  +       + E+GM  LGEI FL  +  P
Sbjct: 121 MISALLETKYLVLKTLGNFNNEIGLPLTLLGLDESHGAVVVEMGMRGLGEIDFLARIACP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              VIT I   HL     +E IA AK E+   +   G   LN DD +       + A   
Sbjct: 181 TAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVLNGDDPWQRKYAHLTRA--- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             +  +G   +        K      +   V     +        G H   N L  + + 
Sbjct: 238 -KVIFYGMDHSNHVYADNIKCNMGAGASFTVIRDKIAKVFHLPVPGRHNIYNALAAITVG 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     +         G R +     G   +I+++YNANPAS KAA+ +L+++
Sbjct: 297 LQEGLSWE---MCMEGLQNVVLSGMRLQIIDCNG-LKIINDTYNANPASSKAAVRILAEM 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
                G+++AVLGDM E+G+ +   H ++ E +    I  +   G   L + +A   +  
Sbjct: 353 P--CAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVTVGELALHIAEAAKAAGM 410

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +++ S   +     + + L  GD+V+VK S      +++  +
Sbjct: 411 DRKNIYVSRNNNEALEILNNILKAGDLVLVKGSRGMKMEKIVEGI 455


>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 455

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 216/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  G
Sbjct: 3   MQLAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  AEATLWKKGH--EGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   E   AK      
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKIKQEKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +        ++     +  EV   G + +     IG H   N L  + +  
Sbjct: 239 ----TFGFREEDTVFATTFRSYMHHATFEV--NGSTQQFKIPMIGKHNVSNALAAISVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +   +AL+ F P      R +         ++D+ YN+NP +++A  +   Q+ 
Sbjct: 293 HFGENDEQIAQALANFTPTA---NRMQWKKGDVGEAIMDDVYNSNPTAVRAVTTSFGQVM 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL      
Sbjct: 350 VEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPE 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 410 ENLHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
 gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
          Length = 487

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/471 (40%), Positives = 269/471 (57%), Gaps = 8/471 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+  A++
Sbjct: 5   PLWTPAALESATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAITGSV 117
           KGAG  VV          +  PV  V     D VL A+ +L +AAR R+ A I+A+TGSV
Sbjct: 63  KGAGAAVVAAARANEFEGVG-PVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAVTGSV 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT TKE L   LS+   T+A + SYNNH GVPLTLARMP    FG+FE+GM+H  EI  
Sbjct: 122 GKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNHGAEILP 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E L A
Sbjct: 182 LTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLA 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +HA     + +FG+   AD +  +     + S ++  + G  +       G H+A N L
Sbjct: 242 HAHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVAMNSL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  +  L AD+  A  +L+   P  GRG+R    +  G   LIDESYNANPAS++AA+
Sbjct: 302 GVLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASIRAAL 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++ + I  V+  G  +  L +A
Sbjct: 362 ATLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVVFAVGPLMAHLFEA 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           LP ++    + + +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 422 LPMAVRGTAAPSAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
 gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
          Length = 455

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 15/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  + Q   G      PQG V  +  DSRS+   + F A++G  +DGH FI  A ++GA
Sbjct: 5   TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V              V  V + L AL +L    R      +I +TGS GKT+TK++
Sbjct: 65  AGAIVEEFPAELPPGFG--VILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +     G+ NNHIG+PLTL R       G+FE+GM+H GEI  L  +  P 
Sbjct: 123 TASVLGENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPE 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT I  AH+      E IA  K  + E L  +GT+ L+ +D F   + A++ A    
Sbjct: 183 VGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAARTKA---- 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G +K  +      +  +  +   +  +G++        G HM +N ++ +     
Sbjct: 239 DVVLAGINKG-EVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAAGRA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++     LS     +GR ++           +ID++YNANP S+ AA+  L+ +  
Sbjct: 298 FGLSLEECAAGLSKLRLTKGRLEQKMIR----GIQVIDDTYNANPDSVAAALRTLASMPA 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IH 423
              GRRIAVLG M E+G  ++  H  + EV +  ++  V   G     + +A  R     
Sbjct: 354 V--GRRIAVLGRMGELGVEAERGHRLVGEVAAQTHVDSVIGVGEEAQWITEAAWRGGVEK 411

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           V   E+ +     ++     GD+V++K S S    R++  LL +
Sbjct: 412 VVRVESTEEATKVLRDLAKAGDLVLIKGSRSARMERIVEGLLAQ 455


>gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
 gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
          Length = 492

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 190/464 (40%), Positives = 261/464 (56%), Gaps = 4/464 (0%)

Query: 4   LWTFHDLLQAIQG-HSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           LWT  D   A  G H  G  P      G+SIDSR++ P + F A+KGP++DGHD++  A+
Sbjct: 10  LWTAADAAAATNGRHPTGRTPGHWMATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDAL 69

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +V+            PV  VDD L AL  L   ARL ++  +IA+TGSVGKT 
Sbjct: 70  AHGAAAALVSRLPGNVPPE--APVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTG 127

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L + L +   T+A  GS NNH GVPL+LAR P D  +G+FELGM+H GEI  L+ +
Sbjct: 128 TKEALKLCLDARGPTFATQGSLNNHWGVPLSLARFPADAHYGVFELGMNHAGEIGPLSRM 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P +A+ITT+   HL  F+ +E IA AKAEIFEG+   GT  LN D+  F  L A +  
Sbjct: 188 VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAART 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I+SFG  + AD  L +    +  S +   ++G+ ++      G H   N L  L 
Sbjct: 248 QGLTRIWSFGTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLL 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            VS    DV  A + LS   P +GRG R R AL +G FT+IDESYNA+P S+ AA +VL 
Sbjct: 308 AVSAAEGDVAAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLG 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +  P   GRRIAVLGDM E+G  + S H  LA+         V+  G ++  L D LP +
Sbjct: 368 KADPGAGGRRIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKFLFDRLPAA 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   ++E    L   +  ++  GDVV+VK S      R+++ L+
Sbjct: 428 LRGRHTEDSAALAPLVADAVRAGDVVMVKGSAGSRMSRVVDALV 471


>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
 gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
          Length = 455

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 216/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  G
Sbjct: 3   MQLAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  AEATLWKKGH--EGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   E   AK      
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKIKQEKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +        ++     +  EV   G + +     IG H   N L  + +  
Sbjct: 239 ----TFGFREEDTVFATIFRSYMHHATFEV--NGSTQQFKIPMIGKHNVSNALAAISVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +   +AL+ F P      R +         ++D+ YN+NP +++A  +   Q+ 
Sbjct: 293 HFGENDEQIAQALANFTPTA---NRMQWKKGDVGEAIMDDVYNSNPTAVRAVTTSFGQVM 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL      
Sbjct: 350 VEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPE 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 410 ENLHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
          Length = 466

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/466 (37%), Positives = 263/466 (56%), Gaps = 8/466 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G +IG      V+GISID+R++   + F A+K    DGH+F+  A
Sbjct: 1   MSALWTSQEAAVATAGQAIG---DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V             P+  V+DV  AL  L  AAR R+ A ++A+TGSVGKT
Sbjct: 57  LEKGAGAALVTHRPDDVAED--APLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+   +T+A + SYNNH GVPLTLARMP + +F + E+GM+H GEI  L  
Sbjct: 115 STKEMLATMLADQGRTHAAVASYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+A++TT+A  HL  F  +  IA  KA I EGLE  G   LN D +  ++LK ++ 
Sbjct: 175 QARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEEAE 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG++ ++ FG+S    ++L + +   E +  +V++ GK +E+    +G H A N L  L
Sbjct: 235 RLGVQHLW-FGESGQG-YRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALGAL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L  D   A + L+++ P +GRG R    +  G   ++D+SYNANP SM AA+ VL
Sbjct: 293 VCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALEVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +GR+IA LGDM E+G      H  +A++ ++ +I  +   G  +  L  ALP 
Sbjct: 353 AATPNPEKGRKIAYLGDMGELGPKEAELHRGMADLKAVSDIDCIHCIGPLMANLHAALPE 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    +  T       +   L  GD+V+ K S S G  ++++ + E
Sbjct: 413 ARRGKHYATSSDALPDLAGQLSCGDIVLAKGSLSTGLGKIVDGIRE 458


>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
 gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
          Length = 463

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 205/470 (43%), Gaps = 18/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T  D+L A++G  +G        ++ +  DSR+I     F  + G  +DGH +I 
Sbjct: 1   MEPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYIT 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++ GA       D  + +         VD    AL  LAV  + +    ++A+TGSVG
Sbjct: 60  SALEGGAAACFTQRDRESYLPGKC--YIRVDHTQRALRDLAVWYKKKFDIPVVAVTGSVG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+M+   L    K     G+ N  IG   TL R+       + E+GM+H GEI  +
Sbjct: 118 KTTTKDMVAAVLGEHYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNHPGEIEVM 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P + +IT I  +H+ +    E I  AK EIF   +      LN DD     L+ K
Sbjct: 178 SAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPLLRTLEGK 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + I   G +   D+           +   EV+    S +V    +G HM    L
Sbjct: 238 LP----EPILWCGGAPGLDYTADHLVSDGTSNVCCEVKTPHTSCQVEIPALGSHMIYPTL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           M   +        +   + +  F P +    R          T+++++YNANP SM+AA+
Sbjct: 294 MAAAVAEHFGVTAEEFRRGVLHFAPTK---MRMNIIQRGEDITILNDTYNANPQSMRAAV 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VLS+      GR+IAVLGDM E+G L+ + H  +   L    I  +   G     + DA
Sbjct: 351 EVLSKT---HSGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAVGELAKNIYDA 407

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              ++   VHY  T +     +   +     ++VK+S    F  L   L 
Sbjct: 408 AREAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRGMAFEDLTEYLK 457


>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
 gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
          Length = 498

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 195/463 (42%), Positives = 274/463 (59%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L+  ++    G  P+    G+SID+R++ P + FFAI G + DGHD++  A++
Sbjct: 23  PLWTGLGLVAPLEARISGGAPRRGATGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALE 82

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   VV+     S+  L       DDVL AL +L VAAR R++A I A+TGSVGKT+T
Sbjct: 83  KGALAAVVDEAHAESLARLGPLYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTST 142

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L +ALS+  +T+A + SYNNH GVPLTLARMP   +FG+FE+GM+H GEI  LT +V
Sbjct: 143 KEALRLALSAAGRTHASVASYNNHWGVPLTLARMPRQTEFGVFEIGMNHQGEITPLTRMV 202

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+AP H+ NF+G+E IA AKAEIF GLE  G   L  D+  FE L A +   
Sbjct: 203 RPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPGGVAILPADNPQFERLAAAAKRS 262

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG  K+A+ +L   +  ++ S +E  + G+ +       G H+A N L  L  
Sbjct: 263 AAGLVTSFGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVLLA 322

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D   A + L+ F  + GRG+R       G FTLIDESYNANPASM+AA  +   
Sbjct: 323 AKALGVDPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLAGA 382

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++P   GRR+AVLGDM E+G  +   H  LA+ L+  +   V+ +G     L DALP ++
Sbjct: 383 LAPPSPGRRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVFAAGPLCKHLFDALPAAM 442

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + E    +   + +++  GD+V+VK SN      ++  L 
Sbjct: 443 RGEWRENAQMIAPAVAAAVHAGDLVIVKGSNGSKMSAVVEALK 485


>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
 gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
          Length = 473

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 188/466 (40%), Positives = 256/466 (54%), Gaps = 11/466 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D   A  G S G        G+SID+R+I P + F A+     DGH+F+  A QK
Sbjct: 3   LWTSADAASATGGTSQGT---WTATGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +VN       G  +     VDDVL AL +L  AAR R++A +IAITGSVGKTT K
Sbjct: 59  GASAALVNH---VPDGMDAAKCLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML  ALS   K +A + SYNNH GVPLTL+RMPVD D+ + E+GMS  GEI  L+ + R
Sbjct: 116 DMLKQALSGQGKIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLSRMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITTIAPAHL  F  IE IA  KA IFEGLE  G   +  D     +L   + A  
Sbjct: 176 PHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAAVAHA 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+++ AD +L       + + M +              G H A N +  L  V
Sbjct: 236 AEV-VTFGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVLCAV 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAISVL 360
           +   AD   A  ALS + P EGRG+R R  L++       LID+++NANP S+ A + VL
Sbjct: 295 AASGADTTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGLEVL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I+P   GRRIAVLGDM E+G+     H D+A + ++  +  V   G  ++ L  ALP 
Sbjct: 355 AAITPERGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCGPLMVHLDAALPG 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    ++ET   L   +  +L  GDVV+VK S       +++ L +
Sbjct: 415 AKRGEHTETAQDLCRAVPRTLRPGDVVLVKGSKGSRVSLVVDALRK 460


>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis M50/1]
          Length = 470

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/483 (30%), Positives = 212/483 (43%), Gaps = 37/483 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   + +   G   G        + G  IDSR +     F A+KG   DGH FI    +
Sbjct: 4   MTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+   ++    G    P   V+  LGA+ KLA   R      ++ ITGSVGKT+T
Sbjct: 64  KGALAVLSEQELSDPAG----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+ ++    +  + E+G+S  GE+  L  + 
Sbjct: 120 KEMIASVLSQKYNVLKTEGNFNNEIGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I   HL N    + I  AK E FE L   GT  LN DD        +   +
Sbjct: 180 YPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTPEGTAVLNGDDDKL----CEKKMV 235

Query: 243 GIKTIYSFGKSKNA---------------DFQLRKWKQCS-EQSWMEVQLQGKSMEVVHH 286
             K +  +G  K A               +      +    + +   + +  +S  V   
Sbjct: 236 NGKPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIP 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L   VD   + +       GR        ++G  T+ID+ Y
Sbjct: 296 IAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRSNLI----HKGGMTIIDDCY 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP SMKA+I VL+       GR+IAVLGDM E+GE  Q  H  + E      I  ++ 
Sbjct: 352 NANPVSMKASIDVLAAAP----GRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFA 407

Query: 407 SGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +G     L  A+    +   VHY +T D L   +   +  GD V+VK+S+  GF  ++  
Sbjct: 408 AGALSENLAQAVGKCSKETEVHYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQ 467

Query: 464 LLE 466
           L +
Sbjct: 468 LTK 470


>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
 gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
          Length = 446

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 223/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 232 -RRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +G   R           +ID+SYNANP S+ AAI+VL++
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKG---RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A  ++ 
Sbjct: 348 RP----GHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 404 R--HFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
          Length = 446

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 223/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN  +       ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNRAV-----KTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRPLAHS-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 232 -RRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +G   R           +ID+SYNANP S+ AAI+VL++
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKG---RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A  ++ 
Sbjct: 348 RP----GHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 404 R--HFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 479

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 200/467 (42%), Positives = 267/467 (57%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A++  + G +P+    GISIDSR++AP +A+FAIKG  +DGHDF+  A+ 
Sbjct: 5   PLWTSDAMAEAMRAAASGSLPRDVF-GISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV     A   +   P+  VDDVL  L +L  AAR R  A IIA+TGSVGKT+T
Sbjct: 64  AGAALAVVERAQRAKFAA-DAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +  +T+A + S+NNH GVPL+LAR P DV + +FE+GM+H GEI  L  +V
Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+ +ITT+ P HL  FSGIE IA AKAEIF GL   GT  LN D++ F+ L   +   
Sbjct: 183 RPHLVIITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGTAVLNRDNAMFKRLTDSARKA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+  + SFG    AD +L      ++ S +   + G+ +       G H+A N L  L  
Sbjct: 243 GVGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + AD+  A  ALS   P  GRG R      Q   TLIDESYNANPASM AA+ VL Q
Sbjct: 303 AETVGADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQ 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +    +GRRI VLGDM E+G      H DLAE +    I  V+  G  +  L DAL    
Sbjct: 363 VPVGPQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+ET   L   + +++  GDV+++K S       ++  L + FP
Sbjct: 423 RGGYAETAAALESQVVAAIRAGDVLMIKGSLGSRMKTIVTALEKRFP 469


>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis XB6B4]
          Length = 470

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/483 (30%), Positives = 212/483 (43%), Gaps = 37/483 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   + +   G   G        + G  IDSR +     F A+KG   DGH FI    +
Sbjct: 4   MTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+   ++    G    P   V+  LGA+ KLA   R      ++ ITGSVGKT+T
Sbjct: 64  KGALAVLSEQELSEPAG----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+ ++    +  + E+G+S  GE+  L  + 
Sbjct: 120 KEMIASVLSQKYNVLKTEGNFNNEIGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I   HL N    + I  AK E FE L   GT  LN DD        +   +
Sbjct: 180 YPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTPEGTAVLNGDDDKL----CEKKMV 235

Query: 243 GIKTIYSFGKSKNA---------------DFQLRKWKQCS-EQSWMEVQLQGKSMEVVHH 286
             K +  +G  K A               +      +    + +   + +  +S  V   
Sbjct: 236 NGKPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIP 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L   VD   + +       GR        ++G  T+ID+ Y
Sbjct: 296 IAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRSNLI----HKGGMTIIDDCY 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP SMKA+I VL+       GR+IAVLGDM E+GE  Q  H  + E      I  ++ 
Sbjct: 352 NANPVSMKASIDVLAAAP----GRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFA 407

Query: 407 SGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +G     L  A+    +   VHY +T D L   +   +  GD V+VK+S+  GF  ++  
Sbjct: 408 AGALSENLAQAVGKCSKETEVHYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQ 467

Query: 464 LLE 466
           L +
Sbjct: 468 LTK 470


>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 461

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/472 (31%), Positives = 221/472 (46%), Gaps = 21/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL T+ ++ +A  G  +     G V G+S DSRS+   + F  + G  +DGHDFI +A
Sbjct: 1   MKPL-TYEEVAKATGGR-VEKSFSGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            + GA   +   D    + +L++  PV  VDD   AL +LA   R       +AITGSVG
Sbjct: 59  FEAGASATLCAEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   L+   +     G++NN IG+PLTL R+  D   G+ E+GMS  GEI  L
Sbjct: 119 KTTTKEMIAAVLTRRYRVLKNEGNFNNEIGLPLTLFRL-EDHQVGVVEMGMSGFGEISRL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +V+PH+AVIT I  +H+      E IA AK EI E L K   + LN D      L AK
Sbjct: 178 SAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSP---ELYAK 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              L  +T+Y FG  K  D +         +    +V        V     G H   N L
Sbjct: 235 RGTLTPRTVY-FGIEKG-DIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNVYNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +       +D   + L    P +    R           +ID+ YNA+P SMKAA+
Sbjct: 293 AAIAVGLEFGLSIDEIRRGLMELKPTK---MRLEFKKTPFGAVVIDDCYNASPDSMKAAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +VL ++      R++A+LGDM E+G+ +   H ++    +      +   G H   L   
Sbjct: 350 NVLRELGE--GRRKVAILGDMLELGDYAVKAHEEIGRYAAG-KTDILICIGNHAEDLAKG 406

Query: 418 LPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +      +H   T       +   + D D+++VK+S       +++ L+
Sbjct: 407 ATEAGLGPRFIHTFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIVDFLV 458


>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
 gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
          Length = 454

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/463 (29%), Positives = 222/463 (47%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G        +  ++G++ D+R ++    F  + G H++GH F   AV+ G
Sbjct: 5   TVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ N           +PV  VDD L AL +LA +        ++ ITGS GKTTTK+
Sbjct: 65  AAAVLWNQKETNPPEG--VPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP   +  + E+GMS  GEI FL++L  P
Sbjct: 123 MIHSVLQTTYQVHKTDGNFNNHIGLPLTILSMPKGTEIAVLEMGMSAKGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI +GL++ GT +   D+    L++ ++  L  
Sbjct: 183 DAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEP---LIRERATQLS- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG++ + D ++    Q +E +  +V  +G +   +   +G H  +N L  + I  
Sbjct: 239 QQVKTFGEADDCDIKVTHINQLAEGTEFQV--EGYAQGFLIPVLGKHNVKNALAAIAIGQ 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +     +        +  G R      +   T+I+++YNA+P SMKAAI ++  + 
Sbjct: 297 HFGLNERQIAQG---LMQTKLTGMRLELFKTEKGITVINDAYNASPTSMKAAIDLVGDMD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                 RI VLGDM EMG   +++H +L   +    I HV   G     + +   +S   
Sbjct: 354 GFAN--RILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGD 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V      + L   +       DVV+VK+S       +I  L
Sbjct: 412 TRVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVITAL 454


>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
          Length = 456

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 196/463 (42%), Gaps = 16/463 (3%)

Query: 7   FHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             D++ A+ G  I   + +  +  I+ DSRS      F  +KG  +DGH+FI    +KG 
Sbjct: 5   IQDIISAVGGKCIQEGLIKQPIEVITTDSRSQVTNGLFVPLKGDRFDGHEFIKSVYEKGV 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D V      +     V+D   AL  L    R +    ++ ITGSVGKT+TKEM
Sbjct: 65  IATLTMEDKVIDPRLWT---IKVEDTRQALLDLGHYYRNQFTVPVVGITGSVGKTSTKEM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS     +   G++NN IG+PLTL +M    +  + E+GM+H  EI  L+    P 
Sbjct: 122 VAAVLSGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEIHRLSLAAAPE 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT +  +H+ N    E I  AK EI +GL   G + LN D+     +          
Sbjct: 182 VAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDNDLLSTVGELPFNK--- 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G + + D+         E +   V        +    +G HM  N L  + +   
Sbjct: 239 --VTYGLNTSNDYYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNTLAAIAVAQY 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        K             R          T+ID++YNA+P SM+AA+ VL     
Sbjct: 297 LGLSKAEIQKG---LESYAPAKMRMHLETYDNQITVIDDTYNASPDSMEAALKVLRDYDT 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIH 423
             +GR+IAVLGDM EMGE +   H  +    +   I  V+  G     +           
Sbjct: 354 --KGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDRVYAVGTLAEYIFKGAKEQEGAP 411

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             Y  T +     +Q  L   D V+ K+S    F  ++  + +
Sbjct: 412 TFYYPTKEAFIEVMQRELQAEDTVLFKASRGMHFEEMLEAVRK 454


>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
 gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
          Length = 467

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 214/468 (45%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QK 63
           T   +     G   G    +  V G+  DSR    Q  F  + G  +DGH+++   V + 
Sbjct: 4   TIGQIASMCGGILHGETDAEQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A   +   +  A           V+D L AL  LA A    +  +++ ITGS GKTTTK
Sbjct: 64  SAAAFLWQKNHGAPPSEN---AIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L +  K +   G+YNNHIG+PLT+  MP D D  I E+GMS  GEIR L ++ +
Sbjct: 121 DIVNALLGTTFKVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL       EIA AK EI  GL+  G +  N D+     + A+S  + 
Sbjct: 181 PDVAIITNIGESHLLQLGSRAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVK 240

Query: 244 IK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +   +++FG +   D    +     E S   +  Q          +G H   N L  L 
Sbjct: 241 PEGLKLFTFGLATGNDDYPTEITSDGEGSLF-ITAQSGKEAFRLPLLGQHNVVNGLAALA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D D   K LS        G R          T+++++YNA+PASMKAAI  LS
Sbjct: 300 VARHFNVDADHIRKGLSSLKLT---GMRIEVVNCPNGLTVLNDAYNASPASMKAAIQTLS 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
                 +GR++AVLGDM E+G   + FH ++    + +++  ++  G    ++       
Sbjct: 357 AYKT--DGRKVAVLGDMLELGPEEKQFHEEIGIFAAKHDVEVLFTYGALGTSIAQGAQGL 414

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +VH       L   +Q  L   D+V+VK+S       +++ L  
Sbjct: 415 MPTANVHAYTDKQELIQHLQVYLHANDIVLVKASRGMRLEEIVDALKN 462


>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
 gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
          Length = 446

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 223/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 232 -RRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +G   R           +ID+SYNANP S+ AAI+VL++
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKG---RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A  ++ 
Sbjct: 348 RP----GHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 404 R--HFDNQEKLLTALKNDLNANAVVLVKGSFSMRMGNIAHALLEE 446


>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
 gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
          Length = 455

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 214/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  G
Sbjct: 3   MQLAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  AEATLWKKGH--EGKPTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP
Sbjct: 119 MVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   E   AK      
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKIKQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +        ++     +  EV       +     IG H   N L  + +  
Sbjct: 239 ----TFGFREEDTVFATTFRSYMHHATFEV--NDSEQQFKIPMIGKHNVSNALAAISVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +   +AL+ F P      R +         ++D+ YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGENYEQIAQALANFTPTA---NRMQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVM 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL      
Sbjct: 350 VKDGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPA 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 410 ANLHYYPQDEMNHMIDDLKNDIKPDDIVMLKGSHGMHLEKVLDRLM 455


>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
          Length = 455

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 216/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  G
Sbjct: 3   MQLAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  AEATLWKKGH--EGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   E   AK      
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKIKQEKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +        ++     +  EV   G + +     IG H   N L  + +  
Sbjct: 239 ----TFGFREEDTVFATTFRSYMHHATFEV--NGSTQQFKIPMIGKHNVSNALAAISVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +   +AL+ F P      R +         ++D+ YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGENDEQIAQALANFTPTA---NRMQWKKGDVGEAIMDDVYNSNPIAVKAVTTSFGQVM 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL      
Sbjct: 350 VEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPA 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 410 ENLHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 227/467 (48%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +++ A  G  +       ++GIS DSR+I   E F  +KG +++G  F+  A++ 
Sbjct: 2   ILSVKEIIDATSGKLLSGDINSTISGISTDSRTIKEGELFIPLKGENFNGEMFVEDALKI 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+  +   T+ V ++G  + PV  VD+   AL+K+A   R + +   IA+TGS GKTTTK
Sbjct: 62  GSASL---TESVNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS         G++NN IG+PLT+ R+    D  I E+GMS  GEIR L ++  
Sbjct: 119 DMIYDVLSMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIRRLKNIAD 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++AV T I  AH+      E I  AK+E+ E  ++  T+ LN DD     L  K     
Sbjct: 179 PNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLTNK----K 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G   N D +    +   E    +V + G  M+V  +  G H   N L  + I 
Sbjct: 235 GPQYITYGID-NGDVKAFDIEYKEESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAICIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +   KAL+ F P   R      +       +I+++YNANP SMKAA+SVL + 
Sbjct: 294 IKFGVNKEDMRKALAEFQPSAMRLNILDVS----GIKVINDAYNANPGSMKAALSVLKEY 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
               + R++AVLG+M E+GE S   H ++ + +   NI  +   G     + +   +S  
Sbjct: 350 K---DRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVLITVGEFASKIAEGAIKSGM 406

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +V   +     +  I+  + + DV ++K S       ++  L E
Sbjct: 407 DVENVMICKNNVEAYEKIKKIMRNNDVFLIKGSRGMKMEEIVKFLQE 453


>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
 gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
          Length = 460

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 215/467 (46%), Gaps = 13/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++F+++ +A     +     G    +SIDSR+I   + F A+KG  +DGHDF+++A +KG
Sbjct: 4   FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++        S    VF V D   A   LA   R+R    ++A+TGS GKTTTK+
Sbjct: 64  ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LSS     +   + NN IG+ LTL  +  + D  + E+GM   G+I+ L ++ +P
Sbjct: 124 MISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIKELCNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT +  +H+      E IA AK E+ + L + G   LN DDSF + +         
Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKG--- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  +G + N      K    +  +        ++ +V    +G H   + L       
Sbjct: 241 -RVIYYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  DV    + LS F P+ GR              +ID++YNANP SM+ A+  L QIS
Sbjct: 300 ILGVDVTKIQRVLSDFSPRAGRQSLIEI----NGIKIIDDAYNANPLSMEMALRSLKQIS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422
                 +  VL DM E+GE  + FH ++    +      +   G     +          
Sbjct: 356 AKN---KYLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGAKEKGMK 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++  +T       I +    GDV ++K S+S   Y + +LL EE  
Sbjct: 413 MIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459


>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 215/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A +G  +       +  +S DS SI     F  I G   D H FI  A+  GA 
Sbjct: 6   VRDIVKATKGEVLCGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+ +     +    ++P   V +   AL ++            I +TGSVGKTTTKEM+
Sbjct: 66  AVLTSEHDEMT---GNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGSVGKTTTKEMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  K +   G+ N+ IGVPLTL +M  D    + E+GMS  GE+  L+ LV    
Sbjct: 123 ACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPDDQIAVIEMGMSMRGEMSRLSELVELDD 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIK 245
           AVIT I  +H+      + I   K  I + +  K G +F+N DD+     K++       
Sbjct: 183 AVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDAILNKHKSELR----H 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I +FG   + D+     K  +      V ++ K S +   + +G H  +N L+ + +  
Sbjct: 239 RIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNALVAIAVAE 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +V  AIKAL+ +     R +      +    T+ID+SYNA+P SMKA I VL    
Sbjct: 299 RHGIEVTEAIKALAGYEGVSMRQQ----ITDVNGVTIIDDSYNASPDSMKAGIDVLCDY- 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  GR+IAVL DM E+G+ S  +H ++   ++   I  + L G     + D    S  +
Sbjct: 354 -NNNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILFGTMAANIGDGFNGSYKL 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +  + +  ++  +L  GD ++ K S        ++ L E +
Sbjct: 413 --FKKREEINEYLLKNLKSGDAILFKGSRGMKLNECVDFLKENY 454


>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 446

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 222/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I SFG ++ AD   +     SE     ++ L    +E+    IG H   N L     
Sbjct: 232 -RRIISFGINQPADVMAKNITLNSEGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L      +G   R           +ID+SYNANP S+ AAI+VL++
Sbjct: 291 AYAQQLSTDAIKAGLESVVSVKG---RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A  ++ 
Sbjct: 348 RP----GHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 404 R--HFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 455

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 220/467 (47%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +F + ++ + G   +   P   V G++ID R + P  AF A  G   DGH F+  
Sbjct: 1   MTPM-SFANFVRVVGGTPVLHEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA + VV  D+  ++G    P   V + L A+  LA   R + +  ++ ITGS GK
Sbjct: 60  AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   L ++        + NN +G+PLT+ +        + E+GM  LG+I  L 
Sbjct: 116 TTTKEMVAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+I VIT I   H+      E IA AK E+   L   G   LN DD +   ++ ++
Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRT 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I  +G  +  D +        E    EV     +  +    +G H   N L  
Sbjct: 236 SA----RILWYGMGEGCDIRATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNALAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   +      L     + GR +      + G  T+ID++YNA+P+S+ A++ V
Sbjct: 292 IAVGQTLGISLGDIQIGLGRVEAQRGRLRLV----DAGDVTVIDDAYNASPSSVGASLEV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I+    G R+AVLGDM E+GE++   H ++   ++   +  +   G   + +  A  
Sbjct: 348 LERIA--RPGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCVGVLAVEMARAAE 405

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +    V +   ++ L   + S L  GDVV+VK+S      R ++ +
Sbjct: 406 EAGVPVVRHFNALEELLASVGSYLQPGDVVLVKASRGVQLDRAVDAI 452


>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
 gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 213/466 (45%), Gaps = 19/466 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A  G  I       + G S DSR ++P   +  I G  +DGHDFI +A + G
Sbjct: 1   MRVSEIVEATGGKLICGNSNQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+   D+  S       +  V D L AL  +A   R   K  ++ ITGSVGKT+T++
Sbjct: 61  ASAVISGRDIDDSEHI----IIKVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   +    KT    G+YNN IG+PLT+ R+  D    + E+GM+HL E+  L+ +  P
Sbjct: 117 MVYSVIKQQYKTLKTEGNYNNAIGLPLTILRL-KDEQVMVLEMGMNHLKEMEELSMIACP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+ IT +  AH+      E I  AK EI  G+     + +N D+     ++     +G 
Sbjct: 176 DISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTVE-----VGR 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G     DF+        E S    + +GK   V     G H   N L+ + I  
Sbjct: 231 LNLIRVGIDNGVDFKANNVVLSDEGSTFNFEYKGKVYFVDVPVPGKHFVMNALIAIAIGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  IK +  F        R      +   TLID +YNA+  SMK++I VL+  +
Sbjct: 291 QLDISPEQCIKGVKEFELTR---NRMDIVELKNNITLIDGTYNASEDSMKSSIDVLATYT 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422
                R+IAVL DM E+G+ S+  H ++   ++   I  +   G     + DA  ++   
Sbjct: 348 ----RRKIAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAVGKESKYIIDAASKAGVK 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + Y  + + +  ++   +   DV++ K SN      ++ L+ E+ 
Sbjct: 404 QICYCNSNEEVINYLGKIIQSNDVILFKGSNGMKLGNVVALMKEKL 449


>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
 gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
          Length = 446

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 223/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 232 -RRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +G   R           +ID+SYNANP S+ AAI+VL++
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKG---RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A  ++ 
Sbjct: 348 RP----GHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 404 R--HFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
 gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
          Length = 501

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 224/464 (48%), Gaps = 20/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D++ A  G  +       + G+ IDSR     + F  + G   DGH FI  A+++ A
Sbjct: 51  TVKDIVNATGGFLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEPAMER-A 109

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +      I     P   VDD + AL  +    R R     I +TGSVGKTTT+EM
Sbjct: 110 SATLTSEHDNVVISEK--PFIRVDDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREM 167

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+ + +  +   G+ N+ IGVP+TL+RM    D  + E+G+S  G++  L+ +VRP 
Sbjct: 168 IAAAVGTGRHCFQTNGNENSQIGVPMTLSRMTDGYDAAVIEMGISEPGQMEILSDIVRPS 227

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I  AH+      E I   K  I   +++ G + LN DD     +K         
Sbjct: 228 ICVVTMIGVAHIEFMKTQENIRDEKLSIVNHMKENGLLLLNGDDPLLREIKDDMSC---- 283

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG  +  DFQ    +   +    +    G+++ VV   +G H  +N L  + +   
Sbjct: 284 QTLTFGIDEVCDFQGSDVQCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGIAVAYQ 343

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   + TA KA   F      G+R R    +  +T++D++YNA+P SMKA+I VL  +  
Sbjct: 344 LGIPMATAAKAFEHFE-----GQRQRIIRMENRYTILDDTYNASPDSMKASIDVLCDLD- 397

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +G++ AVL DM E+G+ S S+H  + E L    I  V + G   L +K AL       
Sbjct: 398 -CKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVVGEKALDIKKAL-DECDTK 455

Query: 426 YSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Y++T      + + L++ + +   D+V++K SNS     ++ +L
Sbjct: 456 YAKTFSFMDNEEVALYLMAIMKPEDIVLLKGSNSMKLNEIVKIL 499


>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
 gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
          Length = 458

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/466 (29%), Positives = 220/466 (47%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G  +        V+G+S D+R+I     +  ++G  ++GHDF+  AVQKG
Sbjct: 5   TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+           +   V  VDD L AL +LA   R +    +I +TGS GKTTTK+
Sbjct: 65  AAAVLWAEREGTPPEGVP--VVVVDDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  +     G+ NNHIGVPLTL  +    +  + E+GMS  GEI  LT + RP
Sbjct: 123 MIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL      E IA AK EI  GL   G    + D+    LL  +   L +
Sbjct: 183 DAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEP---LLTERVPKLPL 239

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + + +FG  +  D+     +  +  +   +  L G+++      +G H   N L  + +
Sbjct: 240 PRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL--FMPVLGKHYVYNALAAIAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D +      +     +    R      +  FT+I+++YNA+P SM+AA+ +L +
Sbjct: 298 ARFFGIDWEGI---DASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQE 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVLALKDALP 419
           +S +   ++IAVLGDM E+G+   +FH ++ EVL    + +V+  G    H+ A      
Sbjct: 355 LSGY--RQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLSHHIAAAAAPFF 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V   +    L   ++S     D+V++K+S       L+   +
Sbjct: 413 DDGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELLRYWV 458


>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 220/463 (47%), Gaps = 19/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  D+L A  G  +       +N +S DSR + P   F  I G   + H F+  A++ G
Sbjct: 4   MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            G  +      A       P+  V D L A+ ++A   R +    II ITGSVGKTTT+E
Sbjct: 64  -GASLTQEHEQAEGPH---PIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTRE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    + +  +G+ N+ +GVPLTL R+      G+ E+GMS  G+I  L  ++RP
Sbjct: 120 MIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + AV+T +  +H+      + I   K +I  GL + G ++LN D+        K      
Sbjct: 180 NAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMIR----KHIGYVT 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                FG S++  ++    ++   Q+      +     V+ + +G H   N L  + +  
Sbjct: 236 HPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKEPVILNVLGDHNVSNALAAIALGL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T  + L+ F  +       +  L    +T+ID++YNA+P SMKA + +LS   
Sbjct: 296 AYEVPMETIKRQLATFSGQR------QNILKIHGYTVIDDAYNASPDSMKAGLKILSDYK 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GR+IAVL DM E+G  S  +H ++ E L   +I+ ++++G       +A  +   S
Sbjct: 350 DS--GRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKKYAEAAQKKNLS 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +  + D L  +++  L + DVV++K+SN    Y +   L
Sbjct: 408 LKTKWFSSNDELISYLKDYLKENDVVLIKASNGMKLYEVAKAL 450


>gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
 gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 219/473 (46%), Gaps = 24/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ T + L Q  QG  +        +  +S DSR I     F A+KG  +D H+F   
Sbjct: 1   MIPI-TLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V+ GA  ++V+  +      ++ P   V+D   A+ ++A   R +SKA ++ +TGS GK
Sbjct: 60  VVEAGATALLVDHQL-----DVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM    L     T    G+ NN IGVPLTL R+  +  F + E+G +H  EI + T
Sbjct: 115 TSVKEMTASILGQRGNTLYTAGNLNNDIGVPLTLFRLTDEYQFAVIEMGANHPHEIEYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P  A++  +  AHL+ F   E +A AK EI++GL + GT  +N D S+ +  +  S
Sbjct: 175 NIVKPETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTAIVNLD-SYSDKWQFGS 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +T++ +  ++ ADF     +     +   +      +E+     G H   N+L  
Sbjct: 234 R----QTVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEITLPLPGVHNIANVLAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A ++   + ++      GR    R +  +    ++D++YNAN  SM AAI+V
Sbjct: 290 SALAISVGATLEDIKQGIATTKAVPGRLFPVRLSDTK---VVLDDTYNANDGSMIAAINV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++     G RI V GDM E+G+ +   H  +        +  V   G     +  +  
Sbjct: 347 LAKMP----GYRILVAGDMGELGDYAHECHERVGLAAKQAGLDKVLSVGQLSEIISQSSE 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEFPA 470
           R  H         L   +       DVV  +VK S S     ++N L E F  
Sbjct: 403 RGEH---FTVKQDLLTRLIPLAQQNDVVSILVKGSRSSAMEDVVNALKECFEC 452


>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
 gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S   +  P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENRYS-EEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+++ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     +   
Sbjct: 184 IAIITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVTQVKDA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + +  +        +E     +    +        +G H  +N  + + I   
Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTIN---QKEHYHLPILGTHNMKNAAIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R +R+  + N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+    +   
Sbjct: 353 --KGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  + L   + S +   D V+VK S       +++ LL
Sbjct: 411 KHFDQKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
           ATCC 33323]
 gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
 gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
          Length = 455

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 214/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  G
Sbjct: 3   MQLAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  AEATLWKKGH--EGKPTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP
Sbjct: 119 MVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   E   AK      
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKIKQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +        ++     +  E+       +     IG H   N L  + +  
Sbjct: 239 ----TFGFREEDTVFATTFRSYMHHATFEI--NDSEQQFKIPMIGKHNVSNALAAISVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +   +AL+ F P      R +         ++D+ YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGENDEQIAQALANFTPTA---NRMQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVM 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL      
Sbjct: 350 VQDGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPA 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 410 ANLHYYPQDEMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 455

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 223/467 (47%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+  F + +  + G   I   P   + G++ID R + P  AF A  G   DGH F+  
Sbjct: 1   MTPM-PFANFVHVVGGIPVIHEAPNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA + VV  D+  ++G    P   V + L A+  LA   R + +  ++ ITGS GK
Sbjct: 60  AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   LS+I        + NN +G+PLT+ +        + E+GM  LG+I  L 
Sbjct: 116 TTTKEMVAAVLSAIGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+I VIT I   H+      E IA AK E+   L K G   LN DD +   ++ ++
Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRT 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I  +G S+  D +        E    EV     +  +    +G H   N L  
Sbjct: 236 TA----RILWYGMSEGCDIRATSVAWSQEGMSFEVDTPHGTATMRIRLLGQHNVMNALAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   ++   K L     + GR +      + G  T+ID++YNA+P+S+ A++ V
Sbjct: 292 IAVGQTLGLSLEDIEKGLGRVEAQRGRLRLV----DAGDVTVIDDAYNASPSSVAASLEV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I+    G R+AVLGDM E+GE++   H D+   ++   +  +   G     +  A  
Sbjct: 348 LERIA--RPGHRVAVLGDMLELGEMAVQAHRDVGRRVASAGVDRLLCVGELAAEMARAAE 405

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +    V +   ++ L   ++S L  GDVV+VK+S      R ++ +
Sbjct: 406 EAGVPEVRHFNGLEELLASVRSYLQPGDVVLVKASRGVQLDRAVDAI 452


>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
 gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 193/467 (41%), Positives = 259/467 (55%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A+     G +P+    GISIDSR++AP +A+FAI+G  +DGHDF+  A+ 
Sbjct: 5   PLWTSDAMAEAMAATRSGTLPRDVF-GISIDSRTLAPGDAYFAIRGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV         +   P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+T
Sbjct: 64  AGAALAVVEKAQRDKFAA-DAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +   T+A + S+NNH GVPLTLAR P  V + +FE+GM+H GEI  L  +V
Sbjct: 123 KEGLRSVLGAQGPTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  FSG+E IA AK+EIF GLE  G   LN D   F+ L A +   
Sbjct: 183 RPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMFDRLSANALRA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L  
Sbjct: 243 NVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A  A+S   P  GRG R    +  G  TLIDESYNANPASM AA+ VL +
Sbjct: 303 AELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLGR 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +GRRIAVLGDM E+G  +   H  L   +    I  V+  G  +  L DAL    
Sbjct: 363 AEIGAQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+     L   + +++  GD V+VK S       +IN + + FP
Sbjct: 423 RGGYAGDATALESQVVAAIRAGDAVMVKGSLGSRMKTIINAIEKRFP 469


>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
 gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
          Length = 451

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 221/463 (47%), Gaps = 19/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  D+L A  G  +       +N +S DSR + P   F  I G   + H F+  A++ G
Sbjct: 4   MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            G  +      A       P+  V D L A+ ++A   R +    II ITGSVGKTTT+E
Sbjct: 64  -GASLTQEHEQAEGPH---PIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTRE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    + +  +G+ N+ +GVPLTL R+      G+ E+GMS  G+I  L  ++RP
Sbjct: 120 MIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + AV+T +  +H+      + I   K +I  GL + G ++LN D+        K      
Sbjct: 180 NAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMIR----KHIGYVT 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                FG SK+  ++    K+ + Q+      +     V+ + +G H   N L  + +  
Sbjct: 236 HPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMREPVILNVLGNHNVSNALAAIALGL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T  + L+ F  +       +  L    +T+ID++YNA+P SMKA + +LS   
Sbjct: 296 AYDVPMETIKRQLATFSGQR------QNILKIHGYTVIDDAYNASPDSMKAGLKILSDYQ 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GR++AVL DM E+G  S  +H ++ E L   +I+ ++++G       +A  +   S
Sbjct: 350 DS--GRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKEYAEAAQKKNLS 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +  + D L  +++  L + DVV++K+SN    Y +   L
Sbjct: 408 LKTKWFSSNDELISYLKDYLKEHDVVLIKASNGMKLYEVAKAL 450


>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
 gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
          Length = 454

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/463 (29%), Positives = 224/463 (48%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T + + Q   G        +  + G++ D+R ++    F  + G H++GH F   AV+ G
Sbjct: 5   TVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ N           +PV  VDD L AL +LA +        ++ ITGS GKTTTK+
Sbjct: 65  AAAVLWNQKEANPP--FGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP   +  + E+GMS  GEI FL++L  P
Sbjct: 123 MIHSVLQTTYQVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI +GL+K GT +   D+    L++ ++ AL  
Sbjct: 183 ETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTFYYLGDEP---LIRDRATALS- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG++++ D ++    Q +E +  +V  +G +   +   +G H  +N L  + I  
Sbjct: 239 QQVKTFGEAEDCDIKVTHINQLAEGTEFQV--EGYAQGFLIPVLGKHNVKNALAAIAIGQ 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +     +        +  G R      +   T+I+++YNA+P SMKAAI ++  + 
Sbjct: 297 HFGLNERQIAQG---LMQTKLTGMRLELFKTEKGITVINDAYNASPTSMKAAIDLVGDMD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                 RI VLGDM EMG   +++H +L   +    I HV   G     + +   +S   
Sbjct: 354 GFAN--RILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGD 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V      + L   +       DVV+VK+S       +I  L
Sbjct: 412 ARVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVITAL 454


>gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
 gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/473 (29%), Positives = 215/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ T   LLQ   G  I     +  +  +S DSR I     F A+KG  +D HDF   
Sbjct: 1   MIPV-TLSQLLQVTHGRVINEGNQELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V  GA  ++V+  +      ++ P   VDD   A+ +LA   R +SKA ++ +TGS GK
Sbjct: 60  VVDAGAAALLVDHQL-----DINCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM    L    KT    G+ NN IGVPLTL R+  D  F + E+G +H  EI + T
Sbjct: 115 TSVKEMTASILVQRGKTLYTAGNLNNDIGVPLTLFRLTHDHQFAVIEMGANHPHEIEYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P   ++  +  AHL  F   E +A AK EI++GL   GT  +N D S+ +  + K 
Sbjct: 175 NIVKPEAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGTAIVNLD-SYSDKWQFKP 233

Query: 240 HALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                +T++ +  +  ++ADF     +     +   +      +++     G H   N+L
Sbjct: 234 R----QTVWRYSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDITLPLPGMHNIANVL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + A ++   + L+      GR    R   N+    +ID++YNAN  SM AAI
Sbjct: 290 AASALSISVGATLEEISQGLASTKAVPGRLYPVRLGDNK---VVIDDTYNANDGSMIAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +VL+ +     G RI V+GDM E+G  +   H  +        +  V   G     +  +
Sbjct: 347 NVLATLP----GYRILVVGDMGELGHYAHDCHQRVGIAAKQAGLDKVLSVGQLSEIISQS 402

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEF 468
                H         L   +       DVV  +VK S S     ++N L E F
Sbjct: 403 SECGEH---FTVKQDLLTRLIPLTQQNDVVSILVKGSRSSAMEDVVNALKECF 452


>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. m3-13]
          Length = 453

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 218/465 (46%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK- 63
           T   + +  QG  I        V G+S D+R     + +  I G +++GH F+  A++K 
Sbjct: 5   TLKQIQEMAQGQPISSEYSAIVVEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       D       L++    VDD + AL  LA + R +    ++ ITGS GKTTTK
Sbjct: 65  GAVASFWQKDQPEPPTDLNL--IVVDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+T  L +  + +   G+YNNHIG+PLT+  M  D +  + E+GMS  GEI  L+ + +
Sbjct: 123 DMVTSVLETTFRVHKTAGNYNNHIGLPLTILSMKEDTEVAVLEMGMSGRGEIELLSSIAK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  +H+ +    E IA AK EI  GL++ G + +N D+             G
Sbjct: 183 PDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGKLIINGDEPLL-----TDRVGG 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG   N D+Q +        +   +    +  E     +G H   N L  + + 
Sbjct: 238 KTNVIPFGLKANNDYQAKDIMLKGIGTHFII----EETEYFIPVLGAHNVTNALAAIIVG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     +               G R       G +T+I+++YNA+P SM+AA+ +L  +
Sbjct: 294 ELFGVSEE---NRKKGLEQLVITGMRNEVVETSGGWTVINDAYNASPTSMRAALDLLGSL 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
             +  G++IAVLGDM E+G++ ++FH ++ + +   N+ +V+  G   + +       + 
Sbjct: 351 DGY--GKKIAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVFTFGALGMEIAKGAQEVME 408

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             HV        L   ++  L +GDVV+VK S       +I  + 
Sbjct: 409 PSHVKPFMNKQELTRELRPLLENGDVVMVKGSRGMKLEEVIEGIK 453


>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
 gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
          Length = 454

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 212/460 (46%), Gaps = 19/460 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  +L  A+QG   G       +G+S D+RS+ P   F A++G  +DGH FI  A +KG
Sbjct: 7   MSLRELTSAVQGRLQGA--NVAASGVSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   ++   +        +P   V D   AL +LA   R R    I+A+TGS GKTT KE
Sbjct: 65  ASAALLEQAINDP-----LPQIEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L   +   A  G+ NN IGVPLTL  +     F + E+G +  GEI +L+ L RP
Sbjct: 120 MIASVLGWREPVLATRGNLNNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +  +   G 
Sbjct: 180 QVALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPCFSYWRDLA---GE 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG SK+A+   R     +  S   +       ++     G H   N L       
Sbjct: 237 LPVIGFGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATI 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      +L+      G   R +     G   L+D++YNANPAS +AA+ +L++  
Sbjct: 297 ALGVDRQHLSASLAALSSVPG---RLQIRRGIGGMRLLDDTYNANPASFQAALELLAKFP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGD  E+GE + S H  + +      ++ ++  G       +A  R   +
Sbjct: 354 ----GERALVLGDFAELGEEAASLHRIMGKQARAAGVNRLYTLGRLGAFAAEAFGRGA-L 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H+ E    L   +Q  L     ++VK S      +++ +L
Sbjct: 409 HFLEQR-SLLEVLQEELHPNITLLVKGSRCMRMEQIVAVL 447


>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
          Length = 460

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 215/467 (46%), Gaps = 13/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++F+++ +A     +     G    +SIDSR+I   + F A+KG  +DGHDF+++A +KG
Sbjct: 4   FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++        S    VF V D   A   LA   R+R    ++A+TGS GKTTTK+
Sbjct: 64  ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+++ LSS     +   + NN IG+ LTL  +  + D  + E+GM   G+I  L ++ +P
Sbjct: 124 MISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIEELCNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT +  +H+      E IA AK E+ + L + G   LN DDSF + +         
Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKG--- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  +G + N      K    +  +        ++ +V    +G H   + L       
Sbjct: 241 -RVIYYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  DV    + LS F P+ GR              +ID++YNANP SM+ A+  L QIS
Sbjct: 300 ILGVDVTKIQRVLSDFSPRAGRQSLIEI----NGIKIIDDAYNANPLSMEMALRSLKQIS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422
                 +  VL DM E+G+  + FH ++    +      +   G     +          
Sbjct: 356 AKN---KYLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGAKEKGMK 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++  +T       I +    GDV ++K S+S   Y + +LL EE  
Sbjct: 413 MIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459


>gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus epidermidis FRI909]
          Length = 451

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S   +  P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENRYS-EEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+++ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVTQVKDA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + +  +        +E     +    +        +G H  +N  + + I   
Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTIN---QKEHYHLPILGTHNMKNAAIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R +R+  + N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+    +   
Sbjct: 353 --KGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  + L   + S +   D V+VK S       +++ LL
Sbjct: 411 KHFDQKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 448

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 223/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +AI G          V   SI+S++I     F  +KG  +DGHDFI  A
Sbjct: 1   MN-LW-LSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   D       L +P   V+D L AL  LA   R +     ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKDF----DDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++       EV               +H   N L  
Sbjct: 235 K----RKVVTIGIENESNFRAQNVQRHQNGFSFEV----GGYTYFIESFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D +   +A+      + R +  +    +G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILGVDRELIKEAIRQKERLKRRFEVIK----KGSITIVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D + 
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEVK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      Y  T D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKDGTKAYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447


>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 455

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 208/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+   +     +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALD-KTCEGDDKTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +             I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPEG--IAVIEVDDPLAAMQTLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L RP +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTVLEMKPNTEILVLEMGMDRPGQLHHLSELTRPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG   +       +K     +   +       +     IG H   N +  + +     
Sbjct: 239 -TFGFEDDDTVHATGFKSYMHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R           ++ + YN+NP +++A I+   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTA---NRMEWEKGDVGEAIMSDIYNSNPTAVRAVITSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHV 424
            GRRIAVLGDM E+GE S   H +L++ L    I+ V+L G  +  L DAL     S H+
Sbjct: 353 GGRRIAVLGDMLELGENSPKLHAELSDTLDPQIINEVYLYGPEMKNLYDALQGKYESEHL 412

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           HY   + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTKDQMDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455


>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
          Length = 464

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 207/470 (44%), Gaps = 19/470 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +A  G  I       +  +S D+R+I     F  + G  +DGH FI  A++ GA
Sbjct: 5   NIQAIARACNGTIIKKGSVDTIGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGA 64

Query: 66  GLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
             V V              + +  V D L AL  ++V  R       I +TGSVGKT+TK
Sbjct: 65  QAVFVQEGHNTKTIQAFNDVWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTSTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++++  LS     +  +G++NN IG+PLTL  +  +    + E+GMS  GEIR L  +V 
Sbjct: 125 DLISGVLSGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGEIRDLVDMVH 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I VIT I  +H+ +    E I  AK EI    ++   + +N DD +   +        
Sbjct: 185 PEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDDEYLRCIHKDDKDY- 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             T+  +G S   DF     +    E S   V++ G+++      +G H   N L  + I
Sbjct: 244 --TVIFYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVWI 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   + L  F P + R +       +G   +I+++YNA+P SMKAA+ VL  
Sbjct: 302 GLKYHMTFEEIQRGLDGFQPSKMRLEVI----TKGRMKIINDAYNASPDSMKAALDVLDH 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-----LALKDA 417
           +  +   R+IAVLG+M EMG  S+  H  +    +  NI  +   G         A K  
Sbjct: 358 MKSN---RKIAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGEMANWIGLEAKKYG 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  +   H     +     +   + + D ++VK S       ++N L E 
Sbjct: 415 IEENSIRHVFNNKEA-IEMLGQFVQEEDAILVKGSRGMAMEEIVNFLQER 463


>gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 453

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/463 (30%), Positives = 213/463 (46%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLKQIKAWIDCEIDEQYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D+  S  ++  P+  VDD L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFYQKDVSLS-ENIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D D  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLNTEFKVKKTQGNYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAQAKSEITIGLKPNGTFIYDGDEP---LLKPHVEQIQQA 240

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              S G  + N+       +  +E     +  Q    +     +G H  +N  + + I  
Sbjct: 241 NCISIGLEQGNSLVCSVNEEIDTEGIAFTINHQ---QQYELPILGIHNMKNAAIAIAIGQ 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +T    +        R +R+         T+I+++YNA+P SMKAAI  LS + 
Sbjct: 298 ELGLSYETIQHNIKRVKLTGMRMERHETEQQ---VTVINDAYNASPTSMKAAIDTLSNM- 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-H 423
               GR+I VLGD+ E+G+ SQS H ++   L    I  +   G     + +   + +  
Sbjct: 354 ---NGRKIIVLGDVLELGDNSQSMHEEVGSYLQNKQIDQLITFGSEATFIYNTGKQYVDE 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            H+    D L   I   +   D V++K S       +++ L++
Sbjct: 411 AHHFNDKDKLISHITQIVQPEDKVLIKGSRGMKLEEVVDALIK 453


>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 455

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 209/466 (44%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +     +  +  ++ DSR I     F  ++G   DGHDF+  A+  G
Sbjct: 3   MQLAEIAKALN-TTCESDEKTIITSVAFDSRKITDGGLFVPLEGER-DGHDFVAGAINNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             I V  VDD L A+  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  ASATLWKKGHPNKPDD--IAVLEVDDPLEAMQDLARYYLRKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P
Sbjct: 119 MVAAVLSKRFNVHKTQENFNNGIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L + G    N D+        K +    
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIYNGDEPLLAERAKKINQAKA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG   N       ++     +   +       +     IG H   N +  + +  
Sbjct: 239 ----TFGFEDNDTVYATGFRSYKHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGH 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    +L+ F P   R +  +  + +    ++ + YN+NP +++A ++   QI 
Sbjct: 293 HFGESDEEIAASLANFTPTANRMEWEKGDVGED---IMSDVYNSNPTAVRAVLNSFGQIE 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----- 419
               GRRIAVLGDM E+G+ S   H  LA  L    I+ V+L G  +  L +AL      
Sbjct: 350 MPNGGRRIAVLGDMLELGKKSPELHAGLANSLDPQVINEVYLIGDEMKHLYEALQTKYSE 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S+H + ++ MD +   +++ +   D+VV+K S+     +++  L 
Sbjct: 410 ESLHYYQADHMDHMIDDLKNDIKPNDIVVLKGSHGMHLEKVVARLR 455


>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
 gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
          Length = 448

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/460 (30%), Positives = 210/460 (45%), Gaps = 19/460 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L   +QG   G        G+S D+RS+ P   F A+KG ++DGH F+  A +KG
Sbjct: 1   MGLAELTPVVQGRLQG--EDVVAQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   ++   +  S     +P   V D   AL +LA   R R +  ++A+TGS GKTT KE
Sbjct: 59  ASAALLEQTIEDS-----LPQVEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L       A  G+ NN IGVPLTL  +     F + E+G +   EI +L+ LVRP
Sbjct: 114 MIASVLGGAGSVLATQGNLNNDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +  +   G 
Sbjct: 174 QVALITNAGPAHLDGFGDLKGVARAKGEIFQGVNPGGVAVLNADDPHFSYWRDLA---GE 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG +++A+         SE S   +        V     G H   N L    +  
Sbjct: 231 LPVIGFGLTQSAEVTAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVAI 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D D    AL+      G   R +     G   L+D++YNANPAS+KAA+ +L++  
Sbjct: 291 ALGLDRDQISAALAALPSIPG---RLQIRRGAGGMRLLDDTYNANPASLKAALELLAEFP 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGD  E+GE +   H  + +      ++ ++  G       +A  +   +
Sbjct: 348 ----GERFLVLGDFAELGEEAAPLHRMMGKQARAAGVNRLYTLGHLSALAAEAFGQEA-L 402

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H+ E    L   ++        ++VK S      +++  L
Sbjct: 403 HFFEQ-QSLLAALREEQRPNVTMLVKGSRCMRMEQIVAAL 441


>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
 gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 446

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 223/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 232 -RRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +G   R           +ID+SYNANP S+ AAI+VL++
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKG---RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A  ++ 
Sbjct: 348 RP----GHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 404 R--HFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 448

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 228/469 (48%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V+  S++S++I+    F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   + + +    I ++ +P   V D L AL  LA   R + K  T+I +TGSVGK
Sbjct: 59  LQNGAISFISHKE----IENVRVPYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   KT+   G+ NNHIG+P ++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P+I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++       EV               +H   N L  
Sbjct: 235 K----RKVVTIGIENESNFRAQNVQRHQNGFSFEV----GGYTYFIKSFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I +IL  D     +A+      + R +  +    +G  T++D++YNA+  SM +AI  
Sbjct: 287 IAIGTILGIDRQLVKEAIRQKERLKRRFEVIK----KGSITIVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-AL 418
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D A 
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKEGSRAYFVSKDECLDVLKREVTTNSTILFKASRGIKLDEIVDEFLKE 447


>gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
 gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/475 (28%), Positives = 218/475 (45%), Gaps = 26/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T   L Q  QG           ++ +S DSR IA    F A+KG  +D HDF   
Sbjct: 1   MISL-TLAQLAQITQGQIESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V  GA  ++V   +     ++  P   V D   A+ +LA   R +S+A I+ +TGS GK
Sbjct: 60  VVVTGAKALLVERKL-----NVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM    LS   KT    G+ NN IGVPLTL R+  D +F + E+G +H  EI + T
Sbjct: 115 TSVKEMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P  A++  +  AHL+ F   E +A+AK EI++G+ + GT  +N D S+ E  + + 
Sbjct: 175 NIVKPEAALVNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGTAIVNLD-SYSEKWQFQP 233

Query: 240 HALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                +T++ +  +    ADF     +     +   +     S+++     G H   N+L
Sbjct: 234 R----QTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPVGSVDITLPLPGRHNIANVL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + A ++     ++      GR    R + ++    ++D++YNAN  SM AAI
Sbjct: 290 AASALAISVGASLEDIKNGIAKTQAVPGRLYPVRLSEHK---VVLDDTYNANDGSMIAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL ++     G RI V+GDM E+G+ ++  H  +        +  V+  G     +   
Sbjct: 347 QVLEKMP----GYRILVVGDMGELGDYAEDCHQRVGVAAKQAGLDKVFSVGQLSELISQF 402

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEFPA 470
                H         L   +       DVV  +VK S S     ++N L E F  
Sbjct: 403 SECGEH---FTVKADLLTRLIPLAQQKDVVSILVKGSRSSAMEDVVNALKECFEC 454


>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
 gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
          Length = 473

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 14/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +     G           + G+  DSR+I P   F  I G  +DGH+F+   +  G
Sbjct: 5   SLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG      D         +P+  V+D L AL  LA A    S+A ++ ITGS GKTT K+
Sbjct: 65  AGAAFWQRDHQPVPAD--LPLIFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +    +   G+YNNHIG+PLT+  M  D D  + E+GMS   EI  L+++ RP
Sbjct: 123 MVSALLETTYNVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT +  AHL      EEIA AK EI  G++  G +  + D+     + A+   +  
Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKP 242

Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +    ++FG     D         +                    +G H   N L  + +
Sbjct: 243 EGLRTFTFGNQDTNDDYPTGLMFHARGIIFTSSRHAGEG-FSLPLLGRHNVVNALAAMAV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + L    +      S F   +    R          T+++++YN++P ++KAA+ VL  
Sbjct: 302 ATHLGIGDEAI---RSGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGD 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           +  +   RRIAVLGDM E+G+  +SFH ++ E LS  N   V+  G   L   +      
Sbjct: 359 MKGY--RRRIAVLGDMLELGQREESFHAEIGEYLSPDNADLVFTYGPLSLHTANKAKARF 416

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V      + L   +   + + D+V+VK+S       +++ L 
Sbjct: 417 PEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRGMRLEHVVDALK 462


>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
 gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
          Length = 454

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 214/471 (45%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    +++QA++G S G      V  IS D+R+I     F A+KG ++DGHDF   A
Sbjct: 1   MEKLM-LSEIIQAVRG-SYGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  VV    +  +          VD    AL   A   R R    ++ ITGSVGKT
Sbjct: 59  MEAGAVAVVTERPVDGAR------CLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   +S   KT     ++NN +G+P TL  +       + E+GM+H GEI  ++ 
Sbjct: 113 TTKEMIWSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMST 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P + VIT I  +H+ N    E I  AK EI +G      + L+ DD     + +K  
Sbjct: 173 SCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDD----RILSKVQ 228

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G + I+ +  S K++D         S+     +    + +    + +G H  +N L  
Sbjct: 229 VYGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + + L  D    I  L+ F P+  R         +   T I + YNA P SMKA++SV
Sbjct: 289 FCVGAALGMDNADIIAGLADFRPEGMRQNIIE----ENGVTYILDCYNAAPDSMKASLSV 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q+S    GRRIAVLGDM E+G+ S  +H  + E +       +   G +     +   
Sbjct: 345 LGQVSVR--GRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNYYIEGAC 402

Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  +  + ++ + L   ++  L +GD V+ K S       +   + +
Sbjct: 403 DKGFDRANTAHFDSREELAEHLKGILKEGDAVLFKGSRGMKLEEVYEAIKQ 453


>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
 gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
          Length = 458

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 219/466 (46%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G  +        V+G+S D+R+I     +  ++G  ++GHDF+  A QKG
Sbjct: 5   TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+           +   V  VDD L AL +LA   R +    +I +TGS GKTTTK+
Sbjct: 65  AVAVLWAEREGTPPEGVP--VVVVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  +     G+ NNHIGVPLTL  +    +  + E+GMS  GEI  LT + RP
Sbjct: 123 MIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL      E IA AK EI  GL   G    + D+    LL  +   L +
Sbjct: 183 DAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEP---LLTERVPKLSL 239

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + + +FG  +  D+     +  +  +   +  L G+++      +G H   N L  + +
Sbjct: 240 PRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL--FMPVLGKHHVYNALAAIAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D +    ALS          R      +  FT+I+++YNA+P SM+AA+ +L +
Sbjct: 298 ARFFGIDWEGIDAALSRLQVTR---MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQE 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LP 419
           +S +   ++IAVLGDM E+G+   +FH ++ EVL    + +V+  G     +  A     
Sbjct: 355 LSGY--RQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAHHIAAAAAPFF 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V   +    L   ++S     D+V++K+S       L+   +
Sbjct: 413 DDGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELLRYWV 458


>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
 gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
          Length = 456

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 221/472 (46%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ +A +G   G        V+G+ IDSR + P   F AI G   + H FI 
Sbjct: 1   MKNL-SIENITKACRGTFHGDESILSQEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  VV + D    +G    P   V+    AL  +A   R      ++ ITGSVG
Sbjct: 60  DTVKAGAMCVVSHED----LGETDFPYILVESTGQALLDIAKLYRDSFDMKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   L+     +  +G++NN  G+P+T+  MP D +  + E+G++H GE+R L
Sbjct: 116 KTSTKEMIASVLAQKYHVHKTLGNFNNEWGLPITIFDMPEDTEVAVLEMGVNHFGEMRRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD     +   
Sbjct: 176 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDDLLSKM--- 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNM 296
           S   G+  ++ FG   N  F+    + Q    +   + L  G S + +    G HM  N 
Sbjct: 233 SPVKGVTPVF-FGMGDNCAFRADNIEPQGLRGTSCTITLKDGSSFDCLVPVPGIHMVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +   L    D     +       GR              ++D+ YNANP SMKA+
Sbjct: 292 VAGAAVGYTLGLTADEIKAGIESLPSIPGRNHIIETDH----MIILDDCYNANPISMKAS 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+       GR++AVLG+M E+G+ +++ H ++    +  N+  V   G    +L +
Sbjct: 348 IDVLNMA----IGRKVAVLGNMGELGDTAEALHAEVGTYAAEQNVDLVCGIGDLTRSLVE 403

Query: 417 ALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  +    +    +     I   + DGD V+VK+S+   F ++++ L E
Sbjct: 404 EASKGANTEALWFADNESFIQAIPDIIKDGDNVLVKASHGMNFPQIVHALEE 455


>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
 gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
          Length = 457

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 208/465 (44%), Gaps = 17/465 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ Q I+    +       + G+SIDSR I     F   KG + DGH F+  A++KG
Sbjct: 5   TLQEIEQMIKIENDVSSFHNTSIQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDAIEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+      L +P+  V+D L AL +LA + R   K  +  ITGS GKTTTK+
Sbjct: 65  AAAAFWQKDVPNPP--LHLPILIVEDTLTALQELARSYRDELKIKVAGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS   K     G+YNNHIG+PLT+  +  D +  + E+GMS  GEI FLT L RP
Sbjct: 123 MTANLLSLQYKVQKTEGNYNNHIGLPLTILALEEDTEIAVLEMGMSGRGEIDFLTKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243
              +IT I  +HL +    E IA AK EI  GL++ G +    D+    E LK+ + +  
Sbjct: 183 DAVIITNIGESHLQDLGSREGIAEAKLEIVNGLQENGLVIYYGDEPLLDEKLKSYNGSAA 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++   +FG++   D      KQ    S   + +           +G H   N L  +   
Sbjct: 243 LR---TFGRTGKNDVYPMDIKQNDSGSTFGINVSSGKF--YLPVLGTHNVLNALAAMIAA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +   +  +          R      Q    +I+++YNA+P SM AAI +++ +
Sbjct: 298 AHFGVPYEKMNEGFASLKLTN---MRMELLEGQSGEKIINDAYNASPTSMNAAIELIANL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
             +   ++I VLGDM E+G   + FH    + +    + +V+  G     +         
Sbjct: 355 PGYK--KKILVLGDMLELGPQEEDFHYSTGKSVDPEKVDYVFTFGKLGEYIAKGAKEVLP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V        L   ++  +    +++VK+S       +++ L 
Sbjct: 413 HERVAAFTDKQPLIEELKKHVDPETIILVKASRGMKLEEVVSALQ 457


>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
 gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
          Length = 487

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/476 (29%), Positives = 221/476 (46%), Gaps = 24/476 (5%)

Query: 2   NPLWTFHDLLQAIQGHS-IGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
             L+T  ++ + +      G+ PQ     +  +  DSRS+   + F A +G  +D H F+
Sbjct: 10  MALFTVEEICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFV 69

Query: 58  LHAVQKGAGLVVVNTDM--VASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAIT 114
             A+ +GA   +V  D     +     +PV  GV D L A  +LA   R R    +IAIT
Sbjct: 70  PKALAQGAVCAIVQEDYRLPPAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAIT 129

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEM+   ++   KT    G+ NN IGVP TL ++       + E+G+   G+
Sbjct: 130 GSNGKTTTKEMVAQVVAQRWKTLKTEGNLNNRIGVPQTLFQLAPRHQAAVIEMGVDQQGQ 189

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              L  + RP I VIT I P HL  F  +E  A AKAE+ + L + G + LN DD +F+ 
Sbjct: 190 TTRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDHLPQDGAVVLNADDEYFDY 249

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSM--EVVHHGIGYH 291
           L A++       + +FG S  A  +    +      +   + + GKS   E+     G H
Sbjct: 250 LAARAQC----RVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEIRIRAQGQH 305

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L    +  +L        + L+ F P      R + +L+ G   +I++ YNANPA
Sbjct: 306 NVSNALAAAAVGYVLGLSGTAIAEGLAKFRPAA---MRSQISLSHG-VQVINDCYNANPA 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SMKAA+ +L+++      R IA LGDM E+G  S+  H ++   L+   I H+   G   
Sbjct: 362 SMKAAVQLLAEL--GRGKRSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACGVLG 419

Query: 412 LALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             L +   ++      +            +   +  GDVV+VK+S      +++  
Sbjct: 420 RELAEGARQAGMASDRITELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVEA 475


>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 484

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/485 (31%), Positives = 222/485 (45%), Gaps = 28/485 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ + +  +++QA+ G +I  V    VNG+S+DSR++     FFAIKG HYDG  FI  A
Sbjct: 3   MDAI-SLEEVIQAVNGKAISNVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  VVV+      I    +P+  VDDV  AL  LA   R +  A II ITGS GKT
Sbjct: 62  FDAGAIGVVVSKQGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS          S+NN IGVPLT+  +     +GI E+G +  GEI  L+ 
Sbjct: 122 TTKEMLYHLLSHFAPVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPGEILRLSE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVI  I+  HL     IE +A  K +I + L++ G    N D+     +  K  
Sbjct: 182 IGLPDIAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNPLCCEIADKFG 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------------MEVVHHG 287
              I    SFG  +NA  +    K+    S   + +   +              E+    
Sbjct: 242 GNKI----SFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRLCGVKGGGRRQFEIQLQV 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L +  +   L  D+     A   F   + R    +     G  T I+++YN
Sbjct: 298 PGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQQI----GNVTFINDAYN 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP S+ AA+    +I     GR+I + GDM E+G+ S + H +L E  S  N+  +W  
Sbjct: 354 ANPESVFAALKYFEEIDAA--GRKIFICGDMLELGKESHALHKELGEKASTLNLDLLWTV 411

Query: 408 GFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           G +   +  A          V    ++D +  +      + DV+++K S       +I+ 
Sbjct: 412 GKYASDIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIKGSRGMHMETIIDK 471

Query: 464 LLEEF 468
             E F
Sbjct: 472 YREYF 476


>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
 gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
          Length = 449

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 224/465 (48%), Gaps = 19/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A  G  +    +  VNG + D+R I     +  + G + DGH +I  A   G
Sbjct: 1   MQIKEIIEATNGQLLSGDMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++    +     +    V  V D L A++ +A   R+  +  ++ ITGSVGKT+TK+
Sbjct: 61  ASSIITAHKVHYPDKN----VILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   +S+  KT   +G+YNNHIG+PLT+ R+  +    I E+GM+HLGEI  LT +  P
Sbjct: 117 MIYSVVSTKYKTLKTLGNYNNHIGLPLTILRLQNEEVM-ILEMGMNHLGEIEHLTQIALP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+      E+I  AK EI  GL+  GT+ +N D+     + A+++    
Sbjct: 176 DVAAITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVNAENY---- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G++++ D +    +   E S+ ++  QG+   V     G H   N L+ + I  
Sbjct: 232 -HMIRVGQNEDCDLKAIDVELRLEDSYFDIDYQGQRYHVHVPVSGEHFVYNALIAIAIGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D++  I  +  F   + R         +    +ID +YNAN  SMK++++VL+Q  
Sbjct: 291 SLDIDMNLCIAGVEHFELTKNRMDMIEL---KDNIKVIDGTYNANLDSMKSSLAVLAQYP 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSI 422
                R+IAVL DM E+GE  Q+ H ++   +   NI  +   G     + +        
Sbjct: 348 K----RKIAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCVGEASCYIVEKAQSLGLK 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + ++ E    L  ++   L   D +++K SN      ++  L E 
Sbjct: 404 NAYHFEDNQALMTYLDEMLEPEDTILIKGSNGMHLKEVVEHLKER 448


>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
 gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
          Length = 458

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 218/466 (46%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G  +        V+G+S D+R+I     +  ++G  ++GHDF+  A QKG
Sbjct: 5   TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+           +   V  VDD L AL +LA   R +    +I +TGS GKTTTK+
Sbjct: 65  AAAVLWAEREGTPPEGVP--VVVVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  +     G+ NNHIGVPLTL  +    +  + E+GMS  GEI  LT + +P
Sbjct: 123 MIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAKP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +HL      E IA AK EI  GL   G    + D+    LL  +   L +
Sbjct: 183 DAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEP---LLTERVPKLPL 239

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + + +FG  +  D+     +  +  +   +  L G+++      +G H   N L  + +
Sbjct: 240 PRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL--FMPVLGKHHVYNALAAIAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D +      +     +    R      +  FT+I+++YNA+P SM+AA+ +L +
Sbjct: 298 ARFFGIDWEGI---DASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQE 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LP 419
           +S +   ++IAVLGDM E+G+   +FH ++ EVL    + +V+  G     +  A     
Sbjct: 355 LSGY--RQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAHHIAAAAAPFF 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V   +    L   ++S     D+V++K+S       L+   +
Sbjct: 413 DDGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELLRYWV 458


>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 183/469 (39%), Positives = 246/469 (52%), Gaps = 9/469 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  D  +A QG           +G+SID+R++ P + F A+     DGHDF   A+ 
Sbjct: 4   PLWTARDAAEASQGRLTEGG--WAASGVSIDTRTLQPGDLFVALTAQR-DGHDFAQAALD 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+V+     S      P   V++VL  L +L   AR RS A  + +TGSVGKT+ 
Sbjct: 61  KGAAAVLVSNPEACSG-----PRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTSV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L          +    SYNNH GVPLTLARMP      +FE+GM+H GEI  LT +V
Sbjct: 116 KEALAAVFIKAGPAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEISELTRMV 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT IAPAHL N   +E IA AKAEIFEGLE  G   +  DD F   L       
Sbjct: 176 RPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRLMQAVQGS 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   +  FG +  A  ++  + +  +     + + GK M+      G H A N    +  
Sbjct: 236 GAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPASMKAAISVLS 361
                 D D A+ ALS   P EGRG  +   L++G    ++DESYNANPASM+AA  VL 
Sbjct: 296 ALGAGVDPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVLK 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              P G+ R+IAV+G+M E+G  S++ H  LAE L    +  V   G    AL DALP  
Sbjct: 356 LRKPSGQDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARALMDALPAE 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               + ET +     +     DGDVV+VK SN+ G ++L++ L ++   
Sbjct: 416 HRAAWCETAESAIETLSELARDGDVVLVKGSNASGVHKLVSSLRDKAKP 464


>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
          Length = 455

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 217/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +I       ++ ++ DSR +     F  +KG   DGHDFI  A+  G
Sbjct: 3   MQLAEIAKALD-TTIEGNSDPVISSVAFDSRKLNENSLFVPLKGER-DGHDFINSAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +         G+   P+  VDD L A+ +LA     +    ++ ITGS GKTTTK+
Sbjct: 61  AVATLWEKGHPNKPGNF--PLIEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV+P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+        K   +  
Sbjct: 179 DVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKITQVKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG S        ++K     +           +     IG H   N +  + +  
Sbjct: 239 ----TFGFSDQDTIHALEFKSYMHHASF--VTNSSEQKFSIPMIGKHNVSNAMAAICVGH 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D    +LS F P   R +  +  + +    ++D+ YN+NP + KA ++   Q+ 
Sbjct: 293 HFGESDDEIAASLSDFTPTANRMQWRKGDVGED---IMDDIYNSNPTAAKAVLTSFGQVE 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G  S   H  LA+ L    I+ V+L G  +  L++A+     P
Sbjct: 350 VPEGGRRIAVLGDMLELGAASAELHASLADKLDPLVINEVYLYGPEMKNLEEAIKGKYVP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + M+ +   +++ +   D+V++K+S+     +++  LL
Sbjct: 410 DTLHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455


>gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 452

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S PV  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNTLVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTNDLKAHDCVLVKGSRGMKLEEVVNALI 451


>gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
          Length = 455

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 224/466 (48%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL T   L   +    IG  P   +  +  DSRSI PQ  F A+KG  +DGHDF   A
Sbjct: 1   MIPL-TLLQLSHRLDARLIG--PDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V  ++      L +P   V D   A+ ++    R   +   IA+TGS GKT
Sbjct: 58  VENGANALLVTHELP-----LDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+    +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEEGDEFGVFELGANHRGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +  +A+AK+EIF  L   GT  +N DDSF  ++K    
Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMKE--- 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A       +F     AD Q    +      +  ++    + + V     G H   N L  
Sbjct: 230 AASEHKQLTFAIEAAADLQGSGLEPDLLGRYCFKMSYLNQEVSVTLPLSGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            GI   L   +   +  LS+  P +GR    +     G   +ID+SYNANPAS+ AAI  
Sbjct: 290 AGICLTLGLPLSEIVSGLSLLEPVKGRMLPTQL----GRVRVIDDSYNANPASVSAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I     G R  VLGD+ E+G+ +   H +L E+  +  I  ++  G        A  
Sbjct: 346 LQEID----GYRCLVLGDLGELGDNASLLHTELGELAKIRGIEALFSLGELSANASTAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              H    + ++ L   I + L     V+VK S S    R++  L+
Sbjct: 402 GVHHQELEQVVNNLVNHI-NQLQGDVTVLVKGSRSAKMERVVEALI 446


>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 448

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 227/469 (48%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V   SI+S+SI     F  ++G  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
           +Q GA   +   D       L +P   V D L AL  LA  AR + +   ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKDF----DDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   + +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEF 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++       EV     +         +H   N L  
Sbjct: 235 K----RKVVTIGIENESNFRAQNVQKHQNGFSFEVD----NYTYFIKSFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D +   +A      KE   +R+   +N+G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILEIDRELIKEA---IRQKERLKRRFEV-INKGSITVVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D   
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   V  Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKDGVKAYFVSKDECLDVLKREVTSNCTILFKASRGIKLDEVVDEFLKE 447


>gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 463

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/463 (31%), Positives = 208/463 (44%), Gaps = 18/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              ++    G        G V G+S DSRS+   + F  ++GP +DGHDFI  AVQ GA 
Sbjct: 5   LTQIMTITGGDLTPERADGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +        I  L +PV  V D L AL  LA A R      ++A+TGS GKTTTKEML
Sbjct: 65  ACLSEE----VIAGLPVPVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEML 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+   +     G++NN IG+P TL R+  D  + + ELGMS  GEI  L  + RP I
Sbjct: 121 AGILALRGEGLKTEGNFNNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDI 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT + PAHL     ++ +A AK E+F  L   GT  +N DD     L     A G++ 
Sbjct: 181 GVITNVGPAHLETLHNLQGVARAKGELFAALPAGGTAVINGDDPRVLQLPV---ANGVRR 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  +G   +A+ +          +   + L G+S  V     G +   N L        L
Sbjct: 238 LI-YGCGSDAEVRAEDIAVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHAL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  ++ L  F    G   R   A      TL+++ YNANP ++KAA+S L ++   
Sbjct: 297 KVGGAQIVEGLEAFRSCAG---RMAVAELASGATLLEDFYNANPLAVKAALSALDEMPGS 353

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422
             GRRIAVLGDM E+G+ +   H       S   +  + L G           +      
Sbjct: 354 --GRRIAVLGDMLELGDAASEMHRQTGLDASKC-VDLLILLGERAEDTAAGARQGGMPPQ 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   ++ D     +   L  GD V+VK S      ++ N L 
Sbjct: 411 SVWVVKSHDEAVQLLAGILRPGDRVLVKGSRGMTMEKICNALR 453


>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
 gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
          Length = 474

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 182/467 (38%), Positives = 259/467 (55%), Gaps = 6/467 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+   L+ A++    G +P+   +GISID+R++AP + FFAIKG   DGHDF+  A ++
Sbjct: 6   LWSGLGLVGALRARVSGGLPRDA-SGISIDTRTLAPGDLFFAIKGEARDGHDFVAAAFER 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+     ++     P++ V DV  +L +L   AR RS A ++ +TGSVGKT+TK
Sbjct: 65  GAAGAVVDEAHAGALAG-RAPLYVVKDVQESLERLGARARERSAAYVVGVTGSVGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    LS     +A   SYNN  GVPL+LARMP    FG+FE+GM+H GEI  L  LV 
Sbjct: 124 EMAAAVLSRFGAAHASAASYNNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAALAPLVE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +AP HL +F+ +E IA AK+EIF G+   G   LN DD  FE +   + A  
Sbjct: 184 PHVALVTRVAPVHLEHFACLEAIADAKSEIFSGVVDGGVAILNRDDETFERMLEAAAASR 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++ FG S+ A  Q R       ++ +E  + G+ +       G H A N L  L I 
Sbjct: 244 AAHVFGFGVSEGA--QARLLSYDPRENSVEADIFGRRLRYRIGAPGRHFALNSLAVLTIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D+  A  AL+ F P +GRG+R +        TLIDESYNANP SM+AA+ +L   
Sbjct: 302 HVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTLIDESYNANPTSMRAALELLGAE 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            P   GRR+AVLGDM E+G  +   H +LA  L    +  ++ +G  +  L  A P  + 
Sbjct: 362 RPI--GRRVAVLGDMLELGPSAAELHAELASDLEAAGVDLLFTAGPLMARLYYAAPERMR 419

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +  T   L   +  SL  GDVV++K SN     R++  +  +F  
Sbjct: 420 GAHRATARELEEAVLDSLGAGDVVMIKGSNGSRMTRIVEAIRTKFAP 466


>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           coahuilensis m4-4]
          Length = 456

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 213/466 (45%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   +   + + +     V+G+ ID+R +     F   KG + DGH F+   ++KG
Sbjct: 5   TIGQIATIVGALNDVSLFKDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG          +     +PV  V+D L AL  L+ A R      ++ +TGS GKTTTK+
Sbjct: 65  AGAAFWEKSAGPAPEG--LPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+  + +   G+YNNHIG+PLT+  +P D +  + E+GMS  GEIR LT +  P
Sbjct: 123 ILFALLSTKYRVHKTEGNYNNHIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL +    E I+ AK EI EGL+  G    N D+    LL+ +    G 
Sbjct: 183 DAAIITNIGESHLQDLGSREGISKAKFEIVEGLKSEGLFVYNGDEP---LLQERVKGYGG 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG+  +      K       +   V +  +        +G H   N +  + I  
Sbjct: 240 SK-ETFGRHSSNTMYPTKLAPSGFGTTFSVNVSDEEF--HLPILGEHNVMNTMGAMLIAK 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K LS        G R   +      T+I+++YNA+P+S KAAI +L  IS
Sbjct: 297 FFGVGFGDMQKGLSTLKLT---GMRLEVSTGAKGETIINDAYNASPSSTKAAIDLLQTIS 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
               G+R  V+ DM E+G   ++FH ++   +   +I  V   G     + +    ++  
Sbjct: 354 T--TGKRYFVVSDMLELGPNEEAFHHEVGTYV-TDDIDCVLTYGPLSSFIAEGAKETLPE 410

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V + +    L  +++  +   D V+VK+S       ++  L +E
Sbjct: 411 DRVIHFDEKSALIAYLKVVVKSDDTVLVKASRGMKMEEVVLALQKE 456


>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
 gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
          Length = 460

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 227/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLEALSQHLSAHRVGD--DVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V   +        +P   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAVALLVERQLAFD-----VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F ++++ K+ 
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVKAK 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF + + A     D      K  SE  +   +   G+S EV     G H   
Sbjct: 233 QYKQ---LSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHHDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Xanthobacter autotrophicus Py2]
 gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 207/467 (44%), Positives = 270/467 (57%), Gaps = 3/467 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T  ++++A      G      V GISIDSR++ P +AFFAI G + DGH ++  A+  
Sbjct: 22  LHTVGEMVEATGAAVRGAPHD--VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGA 79

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV  D      +   P+  VDDVL AL  +A AAR RSKA I+A+TGSVGKTTTK
Sbjct: 80  GAALCVVARDRADGFPA-DAPLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTK 138

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L IAL +  +T+A   SYNNH GVPL+LAR P +  +G+FE+GM+H GEI  L  LVR
Sbjct: 139 EALRIALGADGETHASAASYNNHWGVPLSLARFPREARYGVFEIGMNHPGEITPLVRLVR 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+ P H++ FS IEEIA AKAEIF+G+E  G   LN D+  F+ LKA + A G
Sbjct: 199 PHVAIVTTVEPVHIAQFSSIEEIADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARG 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I SFG  + AD +L+     S  S     + G  +       G H+ QNML  L   
Sbjct: 259 ISRIVSFGSGEGADVRLKDAALKSYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAA 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  AD+  A  ALS   P  GRG   +  L  G  TL+DESYNANPASM+AA+ VLS+ 
Sbjct: 319 KLAGADMALAALALSHLKPPPGRGVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRT 378

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRRIAVLGDM E+G   ++ H  LAE +    I  V+  G  + AL  ALP    
Sbjct: 379 PVGPRGRRIAVLGDMLELGPDGEAHHAGLAEAIVAAKIDQVYCCGPQMHALWQALPSERR 438

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             Y+     L   + +++  GD ++VK SN      L+  L E F A
Sbjct: 439 GGYAIHATHLEPMVAAAIRVGDTLMVKGSNGSRMGPLVKKLAERFRA 485


>gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
 gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
          Length = 460

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 228/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLEALSQHLSAHRVGD--DITIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        +P   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAVALLVERELAFD-----VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F ++++ K+ 
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAK 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF + + A     D      K  SE  +   +   G+S EV     G H   
Sbjct: 233 QYKQ---LSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHHDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
 gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
          Length = 455

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 205/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGH+FI  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDN-QTVITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +             I V  VDD L A+ +LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPED--IAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   V       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTV--NDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R          +++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFTPTA---NRMEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  LA+ +    I+ V+L G  +  L DAL     P  +
Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLADTMDPQIINEVYLYGSEMKNLYDALQGKYEPEHL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  E  D +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQEQTDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455


>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 448

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 224/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +AI G          V   SI+S++I     F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
           +Q GA   +   D       + +P   V D L AL  LA  AR + +   ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKDF----EDIKVPYIKVQDSLLALQSLACYARRKLNDLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I +IT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDILNLHKKEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++       EV               +H   N L  
Sbjct: 235 K----RKVVTIGIENESNFRAQNVQRHQNGFSFEV----GGYTYFIESFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D     +A+      + R +  +    +G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILEVDRQLVKEAIRQKERLKRRFEVIK----KGSITVVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-AL 418
           + +     EG++I VLGDM E+GE S+  H  +   +    I  V  +G   + + D A 
Sbjct: 343 ICEF----EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAIYIFDEAK 398

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKEGSRAYFVSKDECLDVLKREVTSNSTILFKASRGVKLDEVVDEFLKE 447


>gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 479

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 199/468 (42%), Positives = 258/468 (55%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + +A+     G +P   V GISIDSR++AP +A+FAIKG  +DGHDF+  A+
Sbjct: 4   QPLWTSDAMAEAMAATRSGTLP-RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA L VV     A       P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+
Sbjct: 63  NAGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+A + S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  +
Sbjct: 122 TKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPADTRFAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA+ITT+   HL  FSGIE IA AK+EIF GLE  G   LN D   F+ L + +  
Sbjct: 182 VRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALR 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L 
Sbjct: 242 ASVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +  AD+  A  ALS   P  GRG R    +  G  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +    G+GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL   
Sbjct: 362 RAEVSGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+     L   + +++  GDVV+VK S       ++  L + FP
Sbjct: 422 KRGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFP 469


>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SS3/4]
          Length = 462

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 225/465 (48%), Gaps = 15/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  D++ A  G  +       +N I +DSR +   + F  I G   D H F+    +KGA
Sbjct: 5   SVQDIVLATGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGA 64

Query: 66  GLVVV--NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G V+   + +    +   S     VDD   AL  +    R R    I+ +TGSVGKTTT+
Sbjct: 65  GAVLTSEHKEKTEEMAETSCAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTR 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+  ALS+    Y   G+ N+ +GVP+T++ +  + + G+ ELGMS  GE+  +  + +
Sbjct: 125 EMIAAALSARFHVYKTPGNSNSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I   H+      E I   K  I +GL   G + LN DD      + K   +G
Sbjct: 185 PDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDDMLCRTRGK---VG 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +KT+Y +G  +  D++         ++       GK+ +V+ + +G H   N L  + + 
Sbjct: 242 VKTVY-YGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNALAAIAVC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ A + L  FH  + R + Y      G FT++D+SYNA+PASMKAA+ V   +
Sbjct: 301 CERGMTMEEAAEGLLTFHGFKHRQQVY----ADGRFTVMDDSYNASPASMKAALDVFQGL 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RS 421
           +     R IAVL DM E+G    ++H ++ E  +   +  V   G    +L + +   + 
Sbjct: 357 T---GKRHIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVTLGEACRSLAEGVRAVKE 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           I V        +  ++++ + DGD V+ K SNS G   + +  +E
Sbjct: 414 IPVVEFSDCGEMVKYLEAEIRDGDCVLFKGSNSMGLSAVADQFVE 458


>gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
 gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
          Length = 460

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 228/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLEALSQHLSAHRVGD--DVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        +P   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAVALLVERELAFD-----VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F ++++ K+ 
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAK 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF + + A     D      K  SE  +   +   G+S EV     G H   
Sbjct: 233 QYKQ---LSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRIRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHHDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
 gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 210/463 (45%), Gaps = 19/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + QA++G  +       VN + ID+R +     F AI+G  +DGHDFI  A + GA
Sbjct: 23  TLIQVAQAVRGE-LRNPADLTVNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESGA 81

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              V + ++         P   V D   AL  LA   R      ++ +TGSVGKTTTKEM
Sbjct: 82  AAAVSDREIETDR-----PYILVKDTREALLDLARCYRRAFDGLVVGVTGSVGKTTTKEM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  KT    G+ NN IG+P T+  +    +  + E+GMS LGEI  LT    P 
Sbjct: 137 IAAVLSAGYKTLKTQGNLNNAIGLPRTIFELDSTYEAAVIEMGMSALGEISLLTRTALPD 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +HL      E I  AK EI EG+     + +N D+   + ++        +
Sbjct: 197 IGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLVINGDNDLLQTVQ------LDR 250

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + + G    +AD++    +     +  ++     ++ V+   IG H   N L    +  
Sbjct: 251 PVLTCGIDNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLPAIGEHNVLNALFGFAVGR 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +      AL  + P  G  +  R         LI++ YNA+P SM+AA++ L Q+S
Sbjct: 311 FAGMEDAAIATALGTYTP-SGMRQNTRTV---NGVMLIEDCYNASPDSMRAALTTLQQLS 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+IAVLGDM E+G +SQ  H +  E+     +  ++  G              HV
Sbjct: 367 --CAGRKIAVLGDMLELGPVSQQAHAEAGELAQKCGVDALFCFGALSRETAKHGEGIPHV 424

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +    L   +   +  GD V+ K+S       +I+ + ++
Sbjct: 425 EWFDDKQSLAQSLSGFVQPGDAVIFKASRGMKLEEVIHAVFDK 467


>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 442

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/453 (29%), Positives = 221/453 (48%), Gaps = 20/453 (4%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   + G S+DSR +   + F  + G   DGH+FI  A+  GA   +VN D+  S   
Sbjct: 2   GDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRH 61

Query: 81  LSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              P  V  V+D L AL ++A   R +   +++A+TGS+GKTTTK+M+   L+       
Sbjct: 62  SVHPPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSILK 121

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ N+ IG+PL L  +       + E+GM++ GEI  L  L RP++ VIT IA +H+ 
Sbjct: 122 THGNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRIAESHIE 181

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E IA AK E+ E L   GT  LN DD++   L++K        +  +G + + D 
Sbjct: 182 KLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPG----EVLYYGLT-DGDL 236

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                +   +++  ++    KS ++    IG H   N L  + +  +   D+  +I+AL 
Sbjct: 237 SAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGLDLTQSIRALE 296

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    G   R +   ++    +ID++YNAN  S  AA  VL+ +  +   RRIAVLGDM
Sbjct: 297 GFT---GTSMRNQIKYHKD-MIIIDDTYNANVQSTLAAFDVLTNLPLN---RRIAVLGDM 349

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-----LPRSIHVHYSETMDGL 433
            E+G+ ++  H  + E        ++   G      ++A     +P   ++H ++  +  
Sbjct: 350 FELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKLGMPEHQNIHVAD-REQA 408

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              I   +  GD ++VK S      +++N LL+
Sbjct: 409 IQRILQIVKSGDGILVKGSRGMAMEKIVNSLLK 441


>gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 455

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 207/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +          +  I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPEN--IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K   +     
Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAKKLDQVKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   +       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R           ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTA---NRMEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
           +G RIAVLGDM E+G+ S + H  L++ L    I+ V+L G  +  L DAL     P  +
Sbjct: 353 DGCRIAVLGDMLELGKNSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQDQMDRMIDDLKNDIKPDDIVVLKGSHGMHLENVLARLR 455


>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Lactobacillus crispatus ST1]
 gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus ST1]
          Length = 455

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 204/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGH+FI  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDN-QTVITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +             I V  VDD L A+ +LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPED--IAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   V       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTV--NDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R          +++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFTPTA---NRMEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  L + L    I+ V+L G  +  L DAL     P  +
Sbjct: 353 NGRRIAVLGDMLELGKNSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  E  D +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQEQTDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455


>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 448

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 223/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V+  S++S++++    F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   +      ++ +P   V D L AL  LA   R + K  T+I +TGSVGK
Sbjct: 59  LQNGAISFISQKEF----KNVRVPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   L+   KT+   G++NNHIG+P ++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLNYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+   G + +N D+    L K + 
Sbjct: 175 QIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMADDGMLIINNDNDILNLHKGEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                K I + G    + F+ +  ++       EV     +         +H   N L  
Sbjct: 235 K----KRIITIGIENESHFRAKNVQRHQNGFSFEVD----NYTYFIESFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  IL  D     +A+      + R +  +    +G  T+ID++YNA+  SM +AI  
Sbjct: 287 IAVGIILGIDRQLIKEAIRRKERLKRRFEIIQ----KGSITVIDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-AL 418
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D A 
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKEGSRAYFVSKDECLDVLEREVTSNSTILFKASRGIKLDEIVDEFLKE 447


>gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
          Length = 455

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 207/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +          +  I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPEN--IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K   +     
Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAKKLDQVKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   +       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R           ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTA---NRMEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
           +G RIAVLGDM E+G+ S + H  L++ L    I+ V+L G  +  L DAL     P  +
Sbjct: 353 DGCRIAVLGDMLELGKSSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQDQMDRMIDDLKNDIKPDDIVVLKGSHGMHLENVLARLR 455


>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
 gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
          Length = 451

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 211/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLEQIKHWIPCEIDEQYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G          S   +  P+  V+D L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFSEKGTELS-EDIEGPIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ + +P 
Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL++ GT   + D+    LLK     L   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFIYDGDEP---LLKPHLEQLNKA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G   +           +E     +             +G H  +N  + + I   
Sbjct: 241 RLISVGLGNSNTLVCHVDDIETEGIAFTIN---DKESFTLPILGTHNMKNATIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T    ++       R +R++   N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLSYETIKDNINHVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
             EGR+I +L D+ E+GE SQS H ++   L+   I  ++  G     + +     +   
Sbjct: 353 --EGRKILILADVLELGENSQSMHEEVGAYLNNKAIDVLYTYGDEARFIFNIGQNEVPTA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +    L   ++  + + D ++VK S       ++  L+
Sbjct: 411 QHFDDKSELIKELKIIVKENDKILVKGSRGMKLEEVVEALI 451


>gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 448

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 218/463 (47%), Gaps = 22/463 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI G          V   SI+S++I     F  +KG  +DGHDFI  A+Q GA 
Sbjct: 5   LSEIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAI 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEM 125
             +   D       L +P   V+D L AL  LA   R +     ++ +TGSVGKT+TKE 
Sbjct: 65  SFISQKDF----DDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEY 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + +P 
Sbjct: 121 IFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +      +
Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK----R 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G    ++F+ +  ++       EV               +H   N L  + + +I
Sbjct: 237 KVVTIGIENESNFRAQNVQRHQNGFSFEV----GGYTYFIESFNFHDIYNSLFAIAVGTI 292

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +   +A+      + R +  +    +G  T++D++YNA+  SM +AI  + +   
Sbjct: 293 LGVDRELIKEAIRQKERLKRRFEVIK----KGSITIVDDTYNASTHSMLSAIDSICEF-- 346

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D + +     
Sbjct: 347 --DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVICTGKDAFYIFDEVKKKDGTK 404

Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            Y  T D     ++  +     ++ K+S       +++  L+E
Sbjct: 405 AYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447


>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 448

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 226/469 (48%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V   SI+S+SI     F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
           +Q GA   +   D       L +P   V D L AL  LA  AR + +   ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKDF----DDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   + +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEF 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++       EV               +H   N L  
Sbjct: 235 K----RKVVTIGIENESNFRAQNVQKHQNGFSFEV----GGYTYFIKSFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D +   +A      KE   +R+   +N+G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILEIDRELIKEA---ILQKERLKRRFEV-INKGSITVVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D   
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   V  Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKDGVKAYFVSKDECLDVLKREVTSNCTILFKASRGIKLDEVVDEFLKE 447


>gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris TIE-1]
          Length = 479

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/468 (42%), Positives = 259/468 (55%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + +A+     G +P   V GISIDSR++AP +A+FAIKG  +DGHDF+  A+
Sbjct: 4   QPLWTSDAMAEAMAATRSGTLP-RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA L VV     A       P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+
Sbjct: 63  NAGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+A + S+NNH GVPL+LAR PVD  F +FE+GM+H GEI  L  +
Sbjct: 122 TKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPVDSRFAVFEIGMNHAGEIEPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA+ITT+   HL  FSGIE IA AK+EIF GLE  G   LN D   F+ L + +  
Sbjct: 182 VRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALR 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L 
Sbjct: 242 ANVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +  AD+  A  ALS   P  GRG R    +  G  TLIDESYNANPASM AA+ VL 
Sbjct: 302 AAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +    G+GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL   
Sbjct: 362 RAEISGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               Y+     L   + +++  GDVV+VK S       ++  L + FP
Sbjct: 422 KRGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFP 469


>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/482 (28%), Positives = 218/482 (45%), Gaps = 27/482 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  DL+ A  G  +       +  IS+DSR +   + F  I G + D H F+  A+  G
Sbjct: 6   FTCRDLVLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNG 65

Query: 65  AGLVVVNTDMVASIGSLSI-----------------PVFGVDDVLGALNKLAVAARLRSK 107
           A  V  +           I                     V D   AL    +  R R K
Sbjct: 66  AAAVFTSRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQK 125

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ ITGSVGKTTT+EM+  ALS+    Y   G+ N+ +GVP+T+A +P     G+ EL
Sbjct: 126 LPLVGITGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQIGVIEL 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GMS  GE+  +  + R   AV+T I   H+      + I   K  I +G+ + G++ LN 
Sbjct: 186 GMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAENGSLILNG 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +  +    G +    +G S +  ++       +         + K + V    
Sbjct: 246 DDRLLRSVIPE----GNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLRV 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G HM  N L  L +       ++ A   L  F   +GR + +     +G  T+ID+SYN
Sbjct: 302 MGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTL---KGGITVIDDSYN 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P SMKA + VL  + P G GRRIAVL DM E+G  +  FH ++ E ++++ +  V L 
Sbjct: 359 ASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQVVLL 418

Query: 408 GFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G     +   L  S   + V + E ++ +  ++  +L  GD V+ K SNS    + +  L
Sbjct: 419 GGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLFKGSNSMKLSQAVRHL 478

Query: 465 LE 466
            E
Sbjct: 479 EE 480


>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
 gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
          Length = 455

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/464 (31%), Positives = 222/464 (47%), Gaps = 26/464 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q + G  IG      +  +  DSRSI  +  F A+KG  +DGHDF   A++ GA
Sbjct: 5   TLSLLSQRLNGRLIG--SDTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+ ++      L IP   V D   A+ ++    +   +   +A+TGS GKT+ KEM
Sbjct: 63  SALLVSRELA-----LDIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K     G++NN IGVPLTL R+  D ++G+FELG +HLGEI + + LV+P 
Sbjct: 118 VASILSQHHKVLYTAGNFNNEIGVPLTLLRLEGDEEYGVFELGANHLGEIDYTSSLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  +E +A AK+EIF  L   G   +N DD F ++++  +      
Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHLSADGIAVINLDDPFADVMRGAASQF--- 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T  +F     AD +  +    S       +        +     G H   N L    I  
Sbjct: 235 TQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAATAICL 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++  +  L +  P +GR   +      G   +ID+SYNANPAS+ AAI  L +I 
Sbjct: 295 SLGLSLEEVLSGLKLVEPVKGRMLPHEL----GRVRIIDDSYNANPASVGAAIDWLQEID 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGD+ E+G+ +   H +L E      I  ++  G        A       
Sbjct: 351 ----GFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFTLGELSENTAAAFG----G 402

Query: 425 HYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLL 465
            + + +  L L + +++    GDV V+VK S S G  R++  L 
Sbjct: 403 QHQQELAPLVLCLINTINQLQGDVTVLVKGSRSAGMERVVEALK 446


>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Ruminococcus obeum A2-162]
          Length = 456

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 211/472 (44%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L +   G   G        V+ I+ DSR I     F  I G   D H FI 
Sbjct: 1   MKNL-TLRNLTEVCSGTWHGDDALLDREVSAITTDSRKIEKDCLFVPIVGERVDAHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             + KGA   +   +    +     P   +   L A+  +A     + +  +I ITGSVG
Sbjct: 60  DVMAKGALATLSERE----LSDADYPYIQITSSLQAVKDIAEFYLQQLQLPVIGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L    +T    G++NN +G+PLT+ R+  D    + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLREDDQIAVLEMGISDFGEMTRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   VIT I   HL N    + +  AK EIF  +  +G I LN DD     L   
Sbjct: 176 TRIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLPSGHIVLNGDDD---KLATV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               G+K ++ FG     D    +      +     + +   + +V+    G HM  N L
Sbjct: 233 EGYHGVKPVF-FGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAFDVLVPTPGIHMVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  I    ++   + +       GR K          F ++D+ YNANP SMKA++
Sbjct: 292 AAAAVGRIYGLTIEEIKRGIESLETIRGRFKMIETE----NFLVVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL      GEGRR+A+LGDM E+GE   S H ++ E  +   I      G   L + +A
Sbjct: 348 DVLHD----GEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEA 403

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++     VHY +  + L   +   +  GD ++VK+S+   F  +++ L +
Sbjct: 404 ARKADPDFEVHYEKDRESLLKNLGGYVRKGDTILVKASHFMKFEEVVDALEK 455


>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
          Length = 452

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S PV  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D ++VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRILVKGSRGMKLEEVVNALI 451


>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
 gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 203/469 (43%), Gaps = 22/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G        V+ + IDSR +     F AI+G   DGH FI   ++
Sbjct: 4   MTLKEIAVACGGIYYGDDESYYKEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIR 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +        I + S P   V     AL  +A   R      ++ +TGSVGKT+T
Sbjct: 64  DGALCALSEK----RIENASYPYILVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + ELG+S+ GE+  L  + 
Sbjct: 120 KEMIASVLGEKYNVLKTAGNFNNEIGLPLTIFNIREEHEVAVLELGISNFGEMERLAKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I  AHL +    + I  AK EIF  +   G+I LN DD     L     A 
Sbjct: 180 RPDICVITNIGVAHLEHLKSRDGILKAKTEIFLYMNPNGSIILNGDDD---KLSTVHPAN 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           GI+ ++ FG   + DF   + + C    +         +        G HM  N L  + 
Sbjct: 237 GIQPVF-FGLDDSRDFYADQVESCGLRGTNAVFHTPNSTFSAHISIPGEHMVLNALAGIA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L  + +     +    P  GR             T+ID+ YNANPAS KA++ VL+
Sbjct: 296 AGYALGMNDEEIKAGIEALVPLAGRNNLIET----DSLTIIDDCYNANPASTKASLDVLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +       R+IAVLGDM E+G   +  H ++ +  +   I  +   G     +       
Sbjct: 352 KADT----RQIAVLGDMFELGPTEKQMHYEVGKYAAGLGIDILVCIGQLSEHMATGASEQ 407

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V Y ET D  F      L   D V+VK+SN   F  ++++L E 
Sbjct: 408 CSKTQVFYFETKDDFFEQADRILNPKDTVLVKASNGMKFSEIVSVLKER 456


>gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0031]
          Length = 474

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+ Y I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
 gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
          Length = 455

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/467 (32%), Positives = 227/467 (48%), Gaps = 23/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL     + Q +    +G    G    +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-NLSGICQRLNARLVGA--DGEFRHVSSDSRVIPEHTLFVALKGEKFDGHDFANMA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+ ++      L+I    V D   A+  L    R   +   +A+TGS GKT
Sbjct: 58  VENGATALLVDHELP-----LNIAQLIVKDTQKAMGDLGAYLRELIQPKSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+  D +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHQGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +  +A AK+EIF  L  TGT  +N DD F  ++ + S 
Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLAGVACAKSEIFNHLAATGTAVINADDQFASVMLSASM 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +    T  +FG    AD Q    +  S   +  ++    +S+ +     G H   N L  
Sbjct: 233 SF---TQLTFGVESEADIQASDLEADSVGCYRFKLSYMQESVLIALPLSGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I       +D     LS+  P +GR    +     G   +ID+SYNANPAS+ AAI  
Sbjct: 290 TAICLSFGLTLDEIKLGLSLLLPVKGRMLPTQL----GRVRVIDDSYNANPASVTAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I    EG R  VLGD+ E+G+ +   H +L E++    +  ++  G        A  
Sbjct: 346 LQEI----EGHRCLVLGDLGELGDNASLLHTELGELIKQRGLDSLFTLGELSANASRAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465
              H+     ++ L   I+     GDV V+VK S S    R++  L+
Sbjct: 402 VDGHISLERLVEDLIKNIKQL--QGDVTVLVKGSRSAKMERVVEALI 446


>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/470 (41%), Positives = 263/470 (55%), Gaps = 7/470 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWTF +L  A+ G +        V GISID+R++   + F A+K    DGHDF+  A
Sbjct: 1   MQPLWTFSEL-SAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALKDQR-DGHDFVSPA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVG 118
            + GA   +V+   V      ++  F V D L AL  L  AAR R    A +IA+TGS G
Sbjct: 59  FKAGAAAALVSEGYVRRAEDGAL--FRVSDTLKALEALGRAARDRLSPDARVIAVTGSAG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKEML   LS +  T+A   SYNNH GVPLTLARMP +  FG+FE+GM+H GEIR L
Sbjct: 117 KTGTKEMLRACLSHLGVTHASEKSYNNHWGVPLTLARMPRETRFGVFEIGMNHAGEIRPL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRPH A+ITT+   HL +F  +E IA AK EIFEGL   GT  + +D+     LKA 
Sbjct: 177 TKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGTAIIKFDNPHAARLKAI 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  LG K + +FG S  AD          + S + V+L  + + +     G H+A+N L 
Sbjct: 237 AERLGAKAV-TFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMPGRHIAENALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +  + AD++TA+  L+   P  GRG R    L+ G   LIDESYNANPASM+AA++
Sbjct: 296 VAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYNANPASMRAALA 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ +      RRIAVLGDM E+G  +   H  L + +    I  ++  G H+  L DAL
Sbjct: 356 TLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGIDVIFACGPHMKGLYDAL 415

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P+S    Y++T   L   + S L  GD V+VK+SN      ++  L  ++
Sbjct: 416 PKSKRGGYAQTSSLLQPAVLSELRGGDAVMVKASNGTRLGAVVEALKSKY 465


>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 455

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/467 (33%), Positives = 249/467 (53%), Gaps = 18/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G             IS D+R+I   + F A+KG ++DGHDF+  A  KG
Sbjct: 4   WNTNNIIDATGGRGKSGCHNL---NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   VV+ D   +     +PV  V D L AL+ +A          A +IAITGSVGKTTT
Sbjct: 61  AAAAVVSEDKYRN-----LPVIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++   G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ + 
Sbjct: 116 KDMLHTVLSQYGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSKIS 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I P H+ NFS + +IA AK EI  G++  GT+ LN D+ +++ L +     
Sbjct: 176 NPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLLSHV--- 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLG 301
             + + SFG+S++A   L    +  +   ++++L   + M       G H   ++L  + 
Sbjct: 233 -DRDVVSFGRSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L  ++     AL  F+  +GRG  ++   N     LID+SYNA+PASMKAAI  L 
Sbjct: 292 VIQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLG 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
               +   R++A+LGDM E+G  S +FH+ L + +  Y++  V+  G  +L L   LP +
Sbjct: 352 ---IYSNRRKVALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVGKFMLKLHRLLPGN 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           I   +    + L   + + + + DVV+VK S       ++   + E+
Sbjct: 409 IKGTHFNDSNQLKSNLANIVQNNDVVLVKGSRGVKMDFIVQGFIIEY 455


>gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
 gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
          Length = 457

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 231/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ NF     IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H ++A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 TNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 455

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 206/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +          +  I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPEN--IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   +       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R           ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTA---NRMEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S + H  L++ L    I+ V+L G  +  L DAL     P  +
Sbjct: 353 GGRRIAVLGDMLELGKNSPALHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYKPEHL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTKDQMDRMIDDLKNDIKSDDIVVLKGSHGMYLENVLARLR 455


>gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
 gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
          Length = 485

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/470 (40%), Positives = 270/470 (57%), Gaps = 4/470 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   +L A  G ++   P   ++G+SID+R++   + FFAI+G   DGHDF+  A+ 
Sbjct: 4   PLWTLDAVLAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDALA 63

Query: 63  KGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +GAG  VV+     D+  +   +++P  G D VL A+ KLA AAR RS+A I+A+TGSVG
Sbjct: 64  RGAGAAVVSQARAADLAGAGPLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVTGSVG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   L++   T+A + SYNNH GVPLTL RMP    FG+FE+GM+H GEI  L
Sbjct: 124 KTGTKEALRHVLAAQGATHASVASYNNHWGVPLTLGRMPAASAFGVFEIGMNHAGEIAPL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LVRP +AV+TT+ P H+ +F  +  IA AK EIF GLE  G   +N D+  FE L+  
Sbjct: 184 TRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCGLEPGGVAVINRDNPHFERLRDH 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     I SFG+   AD +  +     + S ++ ++ G  +       G H A N L 
Sbjct: 244 ALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHTALNSLA 303

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  V  L AD+  A  +L+   P  GRG+R    L  G   L+DESYNANPAS++AA++
Sbjct: 304 VMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPASVRAALA 363

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I   G  RRIAVLGDM E+G  +   H DLA  ++ + I  V+++G  +  L +AL
Sbjct: 364 TLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFVAGPLMAELFEAL 423

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P       + +   L   + + +  GD V+VK SNS    R++  L   +
Sbjct: 424 PAGTRGVAAASSADLLDAVVAEIRPGDAVMVKGSNSTRMGRIVEALKARY 473


>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
 gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
          Length = 454

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 218/471 (46%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A++G S G      V  IS D+R+I     F A+KG ++DGHDF   A
Sbjct: 1   MEKLM-LSEIIEAVRG-SYGYPANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  VV    +  +          VD    AL   A   R +    ++ ITGSVGKT
Sbjct: 59  MELGAIAVVTERPVDGAR------CLIVDSTAQALLDSASYYRSKFDIPLVGITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   LS   KT     ++NN +G+P TL  +       + E+GM+H GEI  ++ 
Sbjct: 113 TTKEMIYSVLSRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMST 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P I VIT I  +H+ N    E I  AK EI +G      + L  DD     L AK+ 
Sbjct: 173 SCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDD----KLLAKAE 228

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G + ++ +  S K+ D         S+     +  + + +    + +G H  +N L  
Sbjct: 229 IYGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARINCLGEHNVKNALAA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               +    + +  I  L+ F P+  R    +  + +   T + + YNA P SMKA++SV
Sbjct: 289 FCAGAAAGMENEDIIAGLADFRPEGMR----QNIITENGMTFVLDCYNAAPDSMKASLSV 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LSQIS    GRR AVLGDM E+G+ +  +H  + E +       +   G +     +   
Sbjct: 345 LSQISVR--GRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKNSTYYIEGAC 402

Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  +  + E+ + L  +++++L +GD V+ K S       +   + +
Sbjct: 403 DKGFDRENTKHFESHEELVEYLKANLKEGDAVLFKGSRGMKLEEVYEAIKQ 453


>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus bromii L2-63]
          Length = 450

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 209/467 (44%), Gaps = 23/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ +A  G  +G   +    +  +  DSR +     F AIKG   DGHDFI     
Sbjct: 4   FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEKCFA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +       +      P   V   L A+ K+  A R +    +I I+GSVGKT+T
Sbjct: 64  QGAVCALCEKAPENATK----PCIVVPSTLDAVKKIGRAYREKFDIPVIGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS   KT+   G+ NN +GVPLTL  MP D +  + E+G+S  GE+  L+ +V
Sbjct: 120 KEMLYAVLSQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMTRLSEMV 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V+T I   HL N    + +  AK E+F+   +     LN DD     +K     +
Sbjct: 180 QPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVK----TV 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             K    FG     DF  +  K   +   +  +     +++V    IG +M  N L    
Sbjct: 236 NGKKPVFFGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNIDVEIPAIGTYMVTNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +     ++ +     R        N G   +ID+ YNANP S++A++  LS
Sbjct: 296 AGKLLGLTDEEIANGVASYKTVGSRANVI----NTGKIKIIDDCYNANPTSVRASLDTLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +    +GR++A+LGDM E+G      H D         I  V   G     L     + 
Sbjct: 352 NL----DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVITVGELAKELA----KG 403

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 +T++     I  ++  GDVV+VK+S+S  F  ++  L + F
Sbjct: 404 ADGKAFDTIEDAKPEILKTIKSGDVVLVKASHSMQFENIVEFLKQNF 450


>gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 452

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTNDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
 gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
          Length = 456

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 219/459 (47%), Gaps = 16/459 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L A  G  +    +  +  ISIDSR++   + F  + G   D H FI  A   GA 
Sbjct: 6   VKDILSATGGRLLCGSEEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+ +            P   V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  AVLTSRHDAMDSAR---PWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMV 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+    Y   G++N+ +GVP+T++ +  + + G+ ELGMS  GE+  +  + +  +
Sbjct: 123 ACALSARYSVYKTPGNHNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQM 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+      + I   K  I +GL + G +FLN DD F +  KAK    G +T
Sbjct: 183 AVITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKE---GCRT 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           IY +G  +N D++                   K + V    +G H   N +++L + +  
Sbjct: 240 IY-YGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVRLAVMGSHNVLNAMVSLAVAAEC 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++ A K L  F     R + Y+     G  T+ID++YNA+P SMKA + VL  I+  
Sbjct: 299 GIPMEKAAKCLEAFTGFRNRQQIYQT----GGITVIDDTYNASPVSMKAGLEVLGSITKA 354

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
              RRIAVL DM E+G+ + S+H ++ E ++ + +  +   G     +  A+      I 
Sbjct: 355 K--RRIAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVTLGELAGEIARAVKEHAPCIQ 412

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           V      D L  +++  L +GD V+ K SNS     +  
Sbjct: 413 VKEFMEQDPLVSYLKEELKEGDCVLFKGSNSMMLGPVAE 451


>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 452

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
 gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
          Length = 452

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 212/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCKIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +               G R      +   T+I+++YNA+P SM+AAI  L+ ++ 
Sbjct: 298 LGLTYNRI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLNTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1342]
          Length = 474

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ +LA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVINEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYVP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 452

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
 gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
          Length = 462

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/466 (29%), Positives = 227/466 (48%), Gaps = 14/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +++A++        +   +  +S D+R ++    F  +KG   DGHD+I  A+ +G
Sbjct: 5   TVAQIVKAVKAIDYQTDYRFDMIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V            +      VDD L A  +LA     + +  +I ITGS GKTTTK+
Sbjct: 64  AKAVFWGRQDQTPPEGICA--IWVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+S  + Y   G++NN IG+P T+  MP D +  + E+GMS  GEI FL+ L +P
Sbjct: 122 MTAAVLASRYRVYKTQGNFNNDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  +H+ N      IA AK EI +GL + G+I    ++   E    +  A   
Sbjct: 182 SVAAITLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEH 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG+  ++  Q    +   + +  ++    K   V    +G +   N L  L +  
Sbjct: 242 FKVLPFGEGSSSVIQAENIQLFEDHTIFDLVKPSKQ-SVQLPVLGAYNVNNALAALQVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ AI+A+  F   +    R +         +++++YNA+P +MK+ I   + ++
Sbjct: 301 ECGVPLEQAIEAIQQFELTK---NRTQWVDGIHGSKILNDAYNASPIAMKSVIQSFTSVA 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +GR+I VLGD+ E+GE S++ H  ++EV+   +I  V+L G  + AL +AL     +
Sbjct: 358 T--KGRKIVVLGDIRELGEQSKALHASISEVMFPEDIQEVYLYGEEMSALFEALKTRFEA 415

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            H+HY E     L   ++  L   D V+VKSSN  G   ++  L E
Sbjct: 416 SHLHYVENDKQALIRLLEEELRQNDQVLVKSSNGTGLLSVVEALKE 461


>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 458

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/467 (33%), Positives = 245/467 (52%), Gaps = 15/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G   G+    + + IS D+RSI   + F A+KG  +DGHDF+  A  KG
Sbjct: 4   WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   VV+ D   +      P+  V D L AL+ +A          A +I ITGSVGKTTT
Sbjct: 64  AVAAVVSEDKYRNF-----PLIIVQDTLKALHNMASYYIRNILVNAKVITITGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   L     ++   G+ NN+IG+P T+ + P D  + I E+GMS  GEI+ L+ + 
Sbjct: 119 KDMLNTVLLHYGVSHVNEGNLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT I PAH+ NFS + +IA AK EI  G++  GT+ LN D+  ++ L + ++  
Sbjct: 179 NPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSNAN-- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLG 301
             + + SFGK+++A   L +  +      ++++L  G+ M       G H A + L+   
Sbjct: 237 --RNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVTA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L  D+     AL  F   EGRG  ++   N     LI++SYNANP SMKAAI  L 
Sbjct: 295 VLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLG 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             S     R++A+LGDM  +G  S  FH +L + +   N++ V   G  +L L   LP +
Sbjct: 355 TYSNL---RKVALLGDMLGLGNESIVFHTELLDSIVEQNVNKVHTVGKFMLELNKLLPEN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           I   + +  + L   + + +   DV++VK S+      ++     E+
Sbjct: 412 IKGMHFDDSNQLKSNLANIVQGNDVILVKGSHGMRMDLVVQEFTIEY 458


>gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +  +S D+R ++    F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIG--ENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   V D   AL +L    R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKRLH-----IDVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F   +     L  K
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQV---TLNHK 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F        DF        ++ +   +       +V+    G H   N L    + 
Sbjct: 235 TVWRFSPQAACNIDFFASDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     LS      GR      +  +    L+D+SYNAN  SM AA  VL+ +
Sbjct: 295 MSVGATLEAVKAGLSQLQAVPGRLFPIALSEGK---LLLDDSYNANVGSMTAAAQVLADM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +   H  + E   +  I  V   G     +  +     H
Sbjct: 352 P----GYRVMVVGDMGELGDDAPECHRQVGEAARVAGIDCVLSVGTLSKLISQSNGNGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            H       L   ++  + + +V  V+VK S S    ++++ L E
Sbjct: 408 FH---DKAALISRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449


>gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Enterococcus sp. 7L76]
          Length = 457

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H ++A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 TNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 459

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/471 (30%), Positives = 233/471 (49%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  D+L+A  G  I    +  V+ IS D+R+I   E F A+KG  +DGHDF+  A
Sbjct: 1   MKLDLTVEDILEATNGVLIKGDIREKVDSISTDTRNINEDEVFIALKGEKFDGHDFVKDA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KG   ++++ ++       +I V  V D L AL  +A   R + K  +I +TGS GKT
Sbjct: 61  ILKGVKGIIISREIAVE---GNIFVIRVQDTLKALQDIANYYRRKLKTKVIGVTGSSGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK ++   LS + KTY    ++NN IGVPL++     DVDF + E+ M + GEI  L+ 
Sbjct: 118 TTKNLIGKLLSIVGKTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEISLLSK 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P I VIT I  AH+      E I  AKAEIFE +++ G   LN DD F   +  K  
Sbjct: 178 IAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRIYEKLK 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMT 299
                  Y+FG  + +D +    ++  E   +++    GK +++       ++ +N+L++
Sbjct: 238 IKK----YTFGFDERSDLRGEIVEKNEENYLLKINFPDGKDIKLSLPIYPLNIYRNLLLS 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++ +     ++       F   +   +R      +    +ID++YNANP SM+ AI  
Sbjct: 294 LLVLWV--ISPESVYSLEKDF-YFDLPKQRLNLKRKENGLVIIDDTYNANPDSMRTAIEY 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR+I +LGDM E+G+ S   H ++ E +   NI      G  +    D   
Sbjct: 351 LDLLKSS--GRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIFYGPEMRKALDTYQ 408

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 +++S+  + +   +++SL  GD ++VK S +      +  L +E 
Sbjct: 409 NLDKKRIYWSKDPEEIKSILKNSLCAGDTILVKGSRAMYMENFVKFLEDEL 459


>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
 gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
          Length = 452

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSRSI+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQKGTSID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVNEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + ++  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHISVGNYLEEKHIDVLYTFGNEAKYIYESGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 455

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 205/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ + +     G   +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKDLNTTCEGDD-KTVITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +          +  I V  VD+ L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPEN--ITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   +       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGHHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R           ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTA---NRMEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  L++ L    I+ V+L G  +  L DAL     P ++
Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D++V+K S+      ++  L 
Sbjct: 413 HYYTQDQMDHMINDLKNDIKPDDIIVLKGSHGMHLENVLARLR 455


>gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/467 (42%), Positives = 268/467 (57%), Gaps = 2/467 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  ++  A++    G +P   + GISIDSR++AP EA+FAIKG  +DGH F+  A+
Sbjct: 4   RPLWTLDEMAAAMRAEGRGTLPAA-ITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA L VV          L +P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+
Sbjct: 63  KAGAALAVVEAARRDQFA-LELPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +  KT+  + S+NNH GVPL+L+R P D  F +FE+GM+H GEI  L  +
Sbjct: 122 TKEALRGVLGAQGKTHVSVASFNNHWGVPLSLSRCPADARFAVFEIGMNHAGEITPLVKM 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSG+E IA AKAEIFEG+E  G + LN D++ F  L+  +  
Sbjct: 182 VRPHVAIITTVEPVHLEFFSGVEAIADAKAEIFEGVEPDGAVVLNRDNAQFARLQECARK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           LGI  I +FG  + AD +L         S +  ++ G  +       G HMA N L  L 
Sbjct: 242 LGIAKIVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             S+  AD+  A  ALS   P  GRG R   A+  G   LIDESYNANPASM AA++VL 
Sbjct: 302 AASLAGADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLG 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +     +GRRIAVLGDM E+G  S   H DL   +   ++  ++  G  +  L +AL   
Sbjct: 362 EAKVGTQGRRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGPLMRNLWNALSSG 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               Y+E    L   + +++  GDV++VK S       ++  L   +
Sbjct: 422 RRGGYAEDAAALESQVTAAIRSGDVIMVKGSLGSRMKVIVTALERRY 468


>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Staphylococcus aureus 04-02981]
 gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 452

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 212/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  L  ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus helveticus H10]
          Length = 455

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 204/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ + +     G   +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKDLNTTCEGDD-KTVITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +          +  I V  VD+ L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLWKKGHPNKPKN--ITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +   +       +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHATFTI--NDSEQKFSIPMIGKHNVSNAMAAISVGHHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P      R           ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTA---NRMEWEKGDVGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  L + L    I+ V+L G  +  L DAL     P ++
Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLCDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D++V+K S+      ++  L 
Sbjct: 413 HYYTQDQMDHMINDLKNDIKPDDIIVLKGSHGMHLENVLARLR 455


>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus torques L2-14]
          Length = 461

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 218/473 (46%), Gaps = 26/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G        V+ ++IDSR +     F AIKG   DGH FI   ++
Sbjct: 4   MTLSEIADACCGIYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +   D    +G +  P   V     AL  LA   R      ++ ITGSVGKT+T
Sbjct: 64  AGALCSLSEQD----LGDVDYPYIRVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+SH G+++ L  + 
Sbjct: 120 KEMIASVLSEKYNVLKTEGNFNNEIGLPLTVFNIREEHEVAVLEMGISHFGDMKPLAKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + VIT I  AHL N    + I   K+ + + +   G++  N DD     LK+ +   
Sbjct: 180 RPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGSVIFNGDDD---KLKSYTSRD 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G   +Y FG + +  F +   ++   + ++ E               G HM  N L  + 
Sbjct: 237 GRTPVY-FGLTSSCPFHVENIERKGLKGTYAEFVTPTSRFHAHISIPGDHMIYNALAGVA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D +   + +    P  GR            +T+ID+ YNANPASMK+++ VL+
Sbjct: 296 VGYALGMDNEEIARGIEKLVPIAGRNNLIEAKH----YTIIDDCYNANPASMKSSLDVLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419
               + + R++A+LGDM E+G    + H ++    +  N   +   G     + +A    
Sbjct: 352 ----YADTRKVAILGDMGELGADELAMHREVGAYAAFKNTDVLVCIGALSKDMAEAAKET 407

Query: 420 -----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +++ V + +T +  +  ++  L D D +++K+S+   F  ++  L EE
Sbjct: 408 VLATEKNMKVFHFDTKEDFYQNMRQILKDNDTILIKASHFMEFPEIVKKLSEE 460


>gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
 gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
          Length = 460

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 220/474 (46%), Gaps = 22/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL T   L +  +G    +  Q      +N +  DSR I     F A+KG  +D HDF
Sbjct: 1   MIPL-TVQQLSRLTEGTLYHVTEQQAAALQINTVKTDSRKIVCGGLFIALKGEKFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               V++GAG ++V+  +      +  P   V D   A+ KLA   R +SKA ++A+TGS
Sbjct: 60  AADVVKQGAGALLVSRRL-----DIDCPQVVVKDTRLAMGKLAGWVRQQSKARVVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G++NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNFNNDIGVPLTLFRLTEEHQFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + RP  A++  +  AHL  F  +  +A AK EIF GL   GT  +N D + +   +
Sbjct: 175 YTTAMTRPESALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAPEGTAIINLDSNDWGNWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      +S   +  ADF      +    +   +      +E++    G H   N 
Sbjct: 235 HGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGKIELILPLPGRHNVANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A ++     LS      GR      +  +   T++D++YNAN  SM AA
Sbjct: 295 LAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSAGK---TVLDDTYNANTGSMIAA 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +VLSQ+S    G R+ V+GDM E+G+ +   H ++ + ++  NI  V+  G     + D
Sbjct: 352 ANVLSQMS----GYRVMVVGDMGELGKQAAECHREVGKAVATTNIDKVFSVGTLSSHISD 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
           A   S    +      L   +   L   ++  +++K S S     ++N L E F
Sbjct: 408 A---SGRGQHFANKTELVAALLPLLEQHEMISILIKGSRSTAMEEVVNALKENF 458


>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
 gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
          Length = 465

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 205/471 (43%), Gaps = 22/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +A  G   G        V G++IDSR +     F AI G   + H FI 
Sbjct: 11  MKNL-TLRNITKACHGEYRGPENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIP 69

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++KGA  V+ + D    +G    P   V+    AL   A   R      ++ ITGSVG
Sbjct: 70  DTIKKGAMCVISHED----LGETDFPYILVESTGQALLDTAKLYRDSFDIKVVGITGSVG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   LS     +  +G++NN  G+P+T+  M       + E+G++H GE+R L
Sbjct: 126 KTSTKEMIASVLSQKYCVHKTLGNFNNEWGLPITIFEMNEKHQVAVLEMGVNHFGEMRRL 185

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD     +   
Sbjct: 186 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGSILLNGDDDLLRDM--- 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQ-GKSMEVVHHGIGYHMAQNM 296
               G+   + FG  KN  F     +      S   + L  G+S + +    G HM QN 
Sbjct: 243 GPVKGVDPEF-FGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCIVPLPGAHMVQNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   L          +       GR    +         ++D+ YNANP SM+A+
Sbjct: 302 LAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNNIIQT----DKIIILDDCYNANPISMQAS 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-K 415
           + VL+       GR++AVLGDM E+GE  +  H +         I  V   G     L  
Sbjct: 358 LDVLNMA----IGRKVAVLGDMGELGETGKELHYETGAHAGDIGIDLVCGIGELSKELVA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A        +          ++  +  GD ++VK+S+   F  +++ L +
Sbjct: 414 GASEHGCEAKWFPAKADFLAEMKHLIQPGDNILVKASHGMQFPEIVDELQK 464


>gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 453

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 212/465 (45%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +  +S D+R ++    F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIG--ENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  ++        P   V D   AL +LA   R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKRLLVDE-----PQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F   +     L  K
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVM---LNHK 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F        DF        ++ +   +       +V+    G H   N L    + 
Sbjct: 235 TVWRFSPQAACDIDFFASDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     LS      GR      +  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 295 MSVGATLEAVKSGLSQLQAVPGRLFPIALSEGK---LLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +   H  + E   +  I  V   G     +  A   S +
Sbjct: 352 P----GYRVMVVGDMGELGDEAPECHRQVGEAARVAGIDRVLSVGTLSELIGTA---SGN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
             + +    L   ++  + + +V  V+VK S S    ++++ L E
Sbjct: 405 GEHFQDKAALVSRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449


>gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1346]
          Length = 474

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I   + F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 452

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
 gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
          Length = 452

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 212/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  L  ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
 gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
          Length = 452

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 215/470 (45%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F A+ G  +D HDF   A
Sbjct: 1   MIPV-SLKTLAEITGGTLHG--SDLTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +  S     +P   V+D   A  +L+   R +S A ++A+TGS GKT
Sbjct: 58  IDSGAQALLVSKHLPVS-----VPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDYGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P  A++  +A AHL  F  +  +A AK EIF+GL   G   LN + + +   +    
Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPANGIAILNEESNDWPNWQT--- 229

Query: 241 ALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L  KT++ F     A DF  R  +   + +   ++      E+V    G H   N L  
Sbjct: 230 TLQDKTVWRFSPQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L       GR    R + +Q    L+D+SYNAN  SM AA+ V
Sbjct: 290 AALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQ---LLLDDSYNANVGSMTAAVQV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS++     G R+ V GDM E+G+ ++  H ++ +      I  V   G     + +   
Sbjct: 347 LSEMP----GYRVLVAGDMAELGDETEKCHREIGDAARDAGIDRVLSCGKFSHFISE--- 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            S    +      L   ++  L +     V++K S S    +++  L E+
Sbjct: 400 NSKAGEHFSDKTALTERLRQLLSEHSEITVLIKGSRSAAMEQVVQSLKEK 449


>gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
 gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
          Length = 474

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 252/466 (54%), Gaps = 8/466 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NPLWT    + A  G  IG  P   V+GISID+R++ P + F A++    DGHDF+  A+
Sbjct: 7   NPLWTSGQAMAATGGMLIGE-PGWTVSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAM 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KGA   +V             P   V D L  L  L  AAR RS A  +A+TGSVGKT+
Sbjct: 65  EKGASACLVERGDTGVE-----PALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L     S    +  + SYNNH GVPLTLARMP D    +FELGM+H GEIR L+ L
Sbjct: 120 VKEALAAVFRSSGPAHWSVKSYNNHWGVPLTLARMPRDTGRAVFELGMNHAGEIRDLSSL 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +   +E IA AK+EIF+GLE+ G      DD   E +   +  
Sbjct: 180 VRPHVALITRIAPAHLEHLGSVEAIADAKSEIFDGLEQDGVAIYPSDDPLAERIARHARH 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG S +A  ++ +++   + S     + G          G H A N      
Sbjct: 240 SCAAFLLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVL 360
             +    D     +ALS    + GRG+  R AL  G  FTL+D++YNANP SM AAI+ L
Sbjct: 300 AAAGAGLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAAL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P  +GRRIAVLGDM E+G      H +LA+ L+   +  V   G  +  L DALP+
Sbjct: 360 GAADPGPDGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGRRMKHLHDALPK 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++   Y++   G    ++S +  GDVV++K SN  G +++ ++LL+
Sbjct: 420 TVRAGYAQDAAGGLEQVKSLVRSGDVVLIKGSNGSGLHKIASVLLD 465


>gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O46]
          Length = 452

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 212/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +    +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
 gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
          Length = 474

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYTP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
 gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 213/472 (45%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L +   G   G        ++ I+ DSR I     F  I G   D H FI 
Sbjct: 1   MKNL-TLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             + KGA   +   +    +         VD  L A+  +A     + +  ++ ITGSVG
Sbjct: 60  DVMTKGALATLSERE----LPEADYAYIQVDASLQAVKDIAEFYLEQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L    +T    G++NN +G+PLT+ R+  +    + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   VIT I   HL N    + +  AK EIF+ ++  G I LN DD     L   
Sbjct: 176 TKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPNGHIVLNGDDD---KLITV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               G+K ++ FG +   D    + +    +     + L   + +V+    G HM  N L
Sbjct: 233 REYNGVKPVF-FGLNSERDVYADQIESKGLKGVACRIHLGEDAFDVLVPTPGIHMVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  I    ++   + +       GR K          F ++D+ YNANP SMKA++
Sbjct: 292 AAAAVGRIYGLTIEEIRRGIESLETIRGRFKMIET----DKFLVVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL      GEGRR+A+LGDM E+GE   + H  +    ++  I      G   + + +A
Sbjct: 348 DVLHD----GEGRRVAILGDMGELGEDEAALHEGVGIHAAICGIDACVCVGDLAVHIAEA 403

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++     V+Y +T + L   +   +  GD ++VK+S+   F  ++  L E
Sbjct: 404 ARKANPDFPVYYEKTRESLLEHLNDYVQKGDTILVKASHFMKFEEVVKALEE 455


>gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O11]
          Length = 452

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  ++D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWIEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
 gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
          Length = 463

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/463 (36%), Positives = 249/463 (53%), Gaps = 10/463 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A             VNGISID+R+I P + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAQEAAAA---TGGRATSDWQVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+            P+  V+DV  AL  L  A R R+KA ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVSHIPEGVAED--APLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L+   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L+   R
Sbjct: 117 EMLAAMLTPQGRTHAAVASYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEIAPLSRQAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+A  HL  F  +  IA  KA I EGLE  G   LN D     +L+  +   G
Sbjct: 177 PHVALVTTVAAVHLEAFEDVAGIAREKAAIIEGLEPGGIAVLNADLEETPVLRDVAQDAG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T + FG++ + D+ L++ +   + +   +    +        +G H A N    L  +
Sbjct: 237 VATRW-FGQTSD-DYCLQEAQLSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGALAAI 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L AD++ A+  L  + P +GRG R+   L  G  T++D++YNANP S+ AA++VL+  
Sbjct: 295 EALGADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVLAAT 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRRIA L DM E+G      H  LA+  +L  I  V   G  +  L  ALP +  
Sbjct: 355 PTE--GRRIAYLADMKELGPEEARLHAGLADHPALAKIDAVHCIGPLMKHLYAALPENKR 412

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + ET       + + +  GDVV+ K S S    R+++ + E
Sbjct: 413 GTWVETSAEAASALPAQIQGGDVVLAKGSLSMAVARVVDAIRE 455


>gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 451

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQKGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +     +       +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN----NEHYDLPILGKHNMKNATIAIAVGHE 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +               G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 297 LGLTYNII---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 353 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 410 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 450


>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
 gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
          Length = 472

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/456 (39%), Positives = 254/456 (55%), Gaps = 16/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G  +G        G+SIDSRS+ P + F A+ G   DGH+F++    
Sbjct: 14  PLWTADEIAAATGGQVLGDFEA---TGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTAD 69

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
           +GA   +++  +        IP   V+D   AL +L VAAR R  +    A+TGSVGKT+
Sbjct: 70  RGAAGALISKPVA-------IPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTS 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +   L    K +A + SYNNHIGVPLTLARMP D    +FE+GM+H GEI  L+  
Sbjct: 123 VTRAVEAGLRRAGKAHASVKSYNNHIGVPLTLARMPRDTQRAVFEVGMNHSGEITPLSGF 182

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +RPH   ITT+ P HL NF  G E +A AKAEIF G+E  G   LN D+ +F LLKA++ 
Sbjct: 183 IRPHAVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAE 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + ++SFG  +    QL ++      + +   L+G ++       G H   N L  L
Sbjct: 243 KAGAE-VWSFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVL 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L  D +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  L
Sbjct: 302 LMLEALDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI VL DM E+G LS  FH DLA  ++  +I  V+ +G  + +L +ALP 
Sbjct: 362 G--AREVAGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFCAGPLMKSLWEALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    Y+E+   L   + S++  GDVV+VK SN   
Sbjct: 420 TRRGGYAESAAELAPQVVSAIRAGDVVMVKGSNGSR 455


>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
 gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
          Length = 452

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 210/461 (45%), Gaps = 14/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR++ PQ  F   KG H DGH F+  ++Q GA
Sbjct: 5   TLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSIQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                 T           P+  V D L AL +LA A     +  +IA+TGS GKTTTK+M
Sbjct: 65  AAAFYQTGQEIDSSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D D  I E+GMS   EI  L+ +  P 
Sbjct: 125 IESVLKTQFKVKKTQGNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPD 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +      IA AK+EI  GL+  G    + D+    LL+     +   
Sbjct: 185 IAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGIFIYDGDEP---LLQPHVAQVKHA 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G  +N  +        ++     +     +       +G H  +N  + + +   
Sbjct: 242 KLISVGLEQNNTYVCTIDSNQNDGIAFNIN---NTEHYELPILGVHNMRNAAIAIAVGHE 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +            +  G R    + +   T+I+++YNA+P SMKA+I  LS +  
Sbjct: 299 LGLSYEMIQH---NIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM-- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             EGR+I +L D  E+G+ SQ  H ++ E L   NI  ++  G     +  +    + H 
Sbjct: 354 --EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQPYVSHA 411

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + E+ + +   ++  LV GD V+VK S       ++N ++
Sbjct: 412 QHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVNAII 452


>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Coprococcus sp. ART55/1]
          Length = 455

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 229/464 (49%), Gaps = 20/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +       +  I I+S+     + F  I G   DGH FI  A+Q  A
Sbjct: 5   TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESALQTAA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    D V            VDD + AL  +    R R    ++A+TGSVGKTTT+EM
Sbjct: 65  ATLTSEHDNVVVSDKA---YIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T A+S+  K +   G+YN+  G P+T++RM  + D  + ELG+   GE+  LT + +P 
Sbjct: 122 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDVAVLELGIGEPGEMDILTDIAQPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VITTI  AH+     +E     K  I +G+ + GT+++N DD     +K +       
Sbjct: 182 ICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGTLYINGDDPMLYAVKDEIPC---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +Y++G  +  DF+    +     S  ++      + V    +G H  +N L+ + +   
Sbjct: 238 KVYTYGCGEGMDFRATNIRMEDGYSVYDMVHGDDVVTVKVGVMGLHNVRNSLVAMAVSHQ 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    + + KA   F      G R +     G +T+ID++YNA+P SMKA+  VL  +  
Sbjct: 298 LGVPYEKSSKAFENFR-----GLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMK- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             EG++  VLGDM E+GE S  +H ++ E L    I  V + G H   +K+AL  +    
Sbjct: 352 -CEGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVIGEHAQKIKEAL-DACDTK 409

Query: 426 YSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Y++T+     + + +++ + +   D+V++K SN      ++N+L
Sbjct: 410 YAKTVSFTDTEEIAIYLMALMKPEDIVLLKGSNGMKLSEVVNIL 453


>gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2141]
 gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0645]
          Length = 474

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2137]
          Length = 474

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAKLTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0043]
 gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF]
          Length = 474

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4000]
 gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0017]
 gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0027]
 gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4244]
 gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0312]
 gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1302]
 gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1341]
 gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309B]
 gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309A]
 gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1467]
          Length = 474

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
 gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
          Length = 458

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 212/465 (45%), Gaps = 15/465 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  +L + I+    +       + G+SIDSR I     F   KG   DGH F+  A++ G
Sbjct: 5   SLGELAKMIKVENDLSAFQDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+        +P+  V++ L AL  LA A R      ++ ITGS GKTTTK+
Sbjct: 65  AAASLWEKDVPNPPEG--LPIIIVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS   K     G++N+HIG+PLT+  +    +  + E+GMS  GEI  L+++  P
Sbjct: 123 MVANLLSLKYKVQKTQGNFNSHIGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL +    E IA+AK EI  GL++ G      ++    LLK +      
Sbjct: 183 DAAIITNIGESHLQDLGSREGIATAKMEIISGLKEDGLFVYYGEEP---LLKERIDKDWK 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FGK           K     S  +V  +  + EV+   +G H   N L ++ +  
Sbjct: 240 FKVETFGKGTENTLYPLDVKTTDSGSVFKVNAEPDT-EVMLPVLGEHNVMNALASMLVAK 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +          F   +    R      +    +++++YNA+P SM+AAI +LS + 
Sbjct: 299 EFDVEYKEM---PEAFQQLKLTQMRMEMMEGKRGEKILNDAYNASPTSMRAAIGLLSGLQ 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++I V GDM E+G   +++H ++ + +    I  V+  G            +I  
Sbjct: 356 GY--GKKILVAGDMLELGPNEENYHYEVGQEVQKGKIDLVFTFGTLARQTARGAAENIGE 413

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +V   +    L   ++S L   ++++ K+S       +I  L E
Sbjct: 414 KNVFSFDDKQELTEKLESILHGDEIILFKASRGMKLEEIIESLTE 458


>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/481 (28%), Positives = 212/481 (44%), Gaps = 31/481 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +LL+A  G+ +       V  IS+DSR++   + F  I G   D H F+  A+  GA
Sbjct: 5   TVKELLEATGGNLLHGQEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGA 64

Query: 66  GLVVVNTDMVASIGSLSIPV-----------------FGVDDVLGALNKLAVAARLRSKA 108
            +V  +           +                     V D   AL  L    R     
Sbjct: 65  AVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSL 124

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++ ITGSVGKTTT+EM+  ALS+  K Y   G+ N+ +GVP+T+A +P   + G+ ELG
Sbjct: 125 PLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGVIELG 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           MS  GE+  +  + R   AV+T I  AH+      E I   K  I EG+   G +FLN D
Sbjct: 185 MSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILFLNGD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    LL +     G K +  +G  ++ D++                     + V    +
Sbjct: 245 DP---LLASVVPKEGRKKVL-YGLGRDCDYRAEDLHLEEGYPVFTAVHGDCRVRVRLKVM 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HM  N +  L +       ++ A  AL  F   +GR + +      G  T+ID+SYNA
Sbjct: 301 GSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIFEW----GGVTVIDDSYNA 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P SMKA + VL  +      R+IAVL DM E+G  ++ FH ++   +  + +  V L G
Sbjct: 357 SPVSMKAGLEVLDSVKGE---RKIAVLADMKELGPDTERFHAEIGAYIGEHPLDMVLLLG 413

Query: 409 FHVLALK---DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +    DA   +      +++     ++  ++ +GD ++ K SNS      +  L 
Sbjct: 414 ELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILFKGSNSMKLSEAVKHLK 473

Query: 466 E 466
           E
Sbjct: 474 E 474


>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
          Length = 456

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 202/460 (43%), Gaps = 20/460 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +L A  G             +S D+R+I P   F A++G  +DG+ ++  A +KGA
Sbjct: 5   TLDFILNATGGRLTRACFNCRCTDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +              PV  VDD   AL  LA A R R    ++ +TGSVGKT+TKEM
Sbjct: 65  SIALAERPCPGW------PVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   +T    G+ NN IG+P+++  +    +  +FE+GMS  GEI  L+ +  P 
Sbjct: 119 IFSVLSQAFRTLKNEGNLNNLIGMPMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPD 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H+      E I  AK EI +G+   G + LN DD     ++         
Sbjct: 179 IGVITNIGVSHIEMLGSQENILKAKLEILDGMRPGGKLILNGDDPLLAGVQTDKAE---- 234

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G ++    +   + +  +E +   ++  G S+       G H   N L    +  
Sbjct: 235 -VITYGIENTGCAYTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGR 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  + DT       + P   R K  R     G  T +++ YNA+P SM++A  VL  + 
Sbjct: 294 VLGMEPDTIAAGFLQYAPTGYRQKIERV----GGVTFVEDCYNASPDSMRSAFDVLRTVQ 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSI 422
               GRR+AVL DM E+G+ +   H  +    +   +  ++  G +    ++        
Sbjct: 350 K--TGRRLAVLADMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQEGYTQAGGT 407

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              +      L   +   L +GD V+ K S       +I 
Sbjct: 408 QGAHFTDKAALTDALCQMLREGDAVLFKGSRGMRLEEIIQ 447


>gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 457

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYTP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 460

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 214/468 (45%), Gaps = 17/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +     G  +   P      ++ DSR I P E F A+ G  +D HDF+   
Sbjct: 1   MKAL-TLETIASYSGGRLVHGDPAVTCTSVNTDSRKIQPGELFVALVGEKFDAHDFVPQV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            Q GA  V+V+  +  ++ +L   V  V D L AL +LA A R      +I ITGS GKT
Sbjct: 60  AQAGAAAVIVSR-LPENVEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+++   L    +  A +G++NNHIG+PLT+ RM    +  + E+GM+H GEI  L  
Sbjct: 119 STKDLVAAVLRKKYQVCATLGNFNNHIGLPLTILRMEEGDNCAVLEMGMNHHGEIAVLAG 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP  A+IT I  AH+      E IA  K  +   +   G + LN +D F   + A+SH
Sbjct: 179 IARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAAVPHGGVVVLNANDDFSSSIAARSH 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMT 299
           A     +   G  +  D      +  +  S+  +   G+ +  VH    G HM  N  + 
Sbjct: 239 A----RVVLAGVGEG-DVVATLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAALA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             AL      +G   R +    +G  T++D+SYNANP SM+A +  
Sbjct: 294 AAVGWHFGVVPQDIAAALGEVQLTKG---RVQVKFWRG-VTVLDDSYNANPDSMRAGLKT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KD 416
           L+ +     GRR+AVLG M E+G  ++S H ++    +   +  V+  G     +    +
Sbjct: 350 LAALQ--IPGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVFSVGEEAALITSQAE 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               S       +   +   +   L +GD V++K S S    +++  L
Sbjct: 408 KSGGSGDYRNFSSHAAVAACLTEWLHEGDAVLLKGSRSAAMEQVLTHL 455


>gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
 gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
          Length = 453

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 213/465 (45%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L  A+    IG      ++ ++ D+R I     F A+KG  +D HDF   AV+ G+
Sbjct: 5   SLQTLADALNAELIGT--DTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGS 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   AL +L    R +  A ++ +TGS GKT+ KEM
Sbjct: 63  GALLVSKRLP-----VDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + DF + E+G +H GEI + T L RP 
Sbjct: 118 TAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIEMGANHAGEIAYTTALARPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  ++ AHL  F  +  +A AK EIF+GL + G   +N D++ +   +   H L  K
Sbjct: 178 TALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVINADNNDWANWQ---HKLNGK 234

Query: 246 TIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F     +  DF           +   +     S++V     G H   N L    + 
Sbjct: 235 TVWRFSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLPVPGRHNIANALAAAALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A  +     L+     +GR      +  +   TL+D+SYNAN  SM AA  VL+++
Sbjct: 295 MSVGASPENVRAGLATLQSVKGRLFPIVISEGK---TLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+  +GDM E+G  S+  H  + E +    I  V+  G     + D      H
Sbjct: 352 P----GYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRIISDVSGCGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           +   E    L   + S L +  V  V++K S S    +++  L E
Sbjct: 408 L---EDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 452

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 210/461 (45%), Gaps = 14/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR++ PQ  F   KG H DGH F+  ++Q GA
Sbjct: 5   TLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSIQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                 T           P+  V D L AL +LA A     +  +IA+TGS GKTTTK+M
Sbjct: 65  AAAFYQTGQEIDSSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D D  I E+GMS   EI  L+ +  P 
Sbjct: 125 IESVLKTQFKVKKTQGNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPD 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +      IA AK+EI  GL+  G    + D+    LL+     +   
Sbjct: 185 IAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGIFIYDGDEP---LLQPHVAQVKHA 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G  ++  +        ++     +     +       +G H  +N  + + +   
Sbjct: 242 KLISVGLEQHNTYVCTIDSNQNDGIAFNIN---NTEHYELPILGVHNMRNAAIAIAVGHE 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +            +  G R    + +   T+I+++YNA+P SMKA+I  LS +  
Sbjct: 299 LGLSYEMIQH---NIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM-- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             EGR+I +L D  E+G+ SQ  H ++ E L   NI  ++  G     +  +    + H 
Sbjct: 354 --EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQPYVSHA 411

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + E+ + +   ++  LV GD V+VK S       ++N ++
Sbjct: 412 QHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVNAII 452


>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 452

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 212/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  L  ++ 
Sbjct: 298 LGLTYNTI---YQNLKKVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
 gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
          Length = 470

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 211/473 (44%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L++  D+ +A  G   G      V G+S DSR++ P E F  ++G  +DGHD++  A  +
Sbjct: 2   LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDR 61

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  +V+     +        +    VDD L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L          G+ NN IG+P  L R+     + + E+GMS  GEI  L  + 
Sbjct: 122 KEMLAAILGQTGPGLKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFGEIDRLAEIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT   PAHL     +E +A AK E+F  L   G    N DD     L A+  + 
Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDP----LIARCPSP 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG   NAD      +          ++L  +S+ V     G H   N L    
Sbjct: 238 DGVRRVSFGLH-NADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +T  + L  F P   R          G   LID+SYNANPASM AA++ L 
Sbjct: 297 AAHVLGVPTETIARGLGEFSPYARRFNLEEV----GDVILIDDSYNANPASMAAALTTLR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I      R +AVLGDM E+GE ++  H  L  +L+   +  +++ G     +       
Sbjct: 353 EIRA--GRRAVAVLGDMLELGEGAEEAHRQLG-LLAATCVDRLYVMGGMAGIVAAGALEG 409

Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 V  + + D +   ++ +   GD ++VK S      R+   + E F A
Sbjct: 410 GLADDAVTVATSHDAIVADLRRTTAAGDFILVKGSRGLAMDRVAEKMREVFVA 462


>gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mollicutes bacterium D7]
 gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. D7]
          Length = 450

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 218/466 (46%), Gaps = 19/466 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +++ A  G  I       + G S DSR       +  I G  YDGHDFI  A   G
Sbjct: 1   MKVSEIVIATGGKLISGDETMEITGFSQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++ +  +          V  VD+ L AL K+A   R   K  ++ ITGSVGKT+T++
Sbjct: 61  ASAIITDRLIEDDKHV----VILVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   +    KT    G+YNN+IG+PLT+ R+  D +  I E+GM+HL E+  L+ +  P
Sbjct: 117 MVYSVVKQQYKTLKTEGNYNNNIGLPLTILRL-KDEEVMILEMGMNHLNEMEELSRIACP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+ IT +  AH+      E I  AK EI  G+    T+ +N D+     ++        
Sbjct: 176 DISAITNVGTAHIGELGSRENILKAKLEIVAGMSDGSTLVINGDNDMLSTVR-----FDN 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G    A F+  K     + S   +   GK  +VV    G H   N L+ + I  
Sbjct: 231 FKVVKVGVDCAAVFKAEKVILMDDHSEFTINYNGKVYQVVVPVPGNHFVLNALVAIAIGI 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++  I+ +S F   +   KR      +   TLID +YNA+  SMK++I VL+  S
Sbjct: 291 NLEIPMEKCIQGISQFELTK---KRMDVIELKNNITLIDGTYNASEDSMKSSIDVLATYS 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSI 422
                R+IAVL DM E+GE S+  H  + + ++   I  +   G     + D  AL    
Sbjct: 348 ----RRKIAVLADMLELGEFSEQLHRSVGKYVAEKQIDVLVAVGREAKFMSDSAALSGMA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            ++Y      +  +++++L + DVV++K SN      ++  + E+F
Sbjct: 404 EIYYCNNNQEVVNYLKNNLQNDDVVLLKGSNGMKLKDVVTKIEEKF 449


>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-63q42]
 gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile ATCC 43255]
          Length = 457

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 224/463 (48%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G 
Sbjct: 5   TIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++M
Sbjct: 65  KTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P 
Sbjct: 125 IYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNPK 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K HA  +K
Sbjct: 185 IAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHAYKLK 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +KN D     +    +       + GK  E+    IG H   N +  + +   
Sbjct: 245 ---TFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLC 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +   
Sbjct: 302 LNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGR--- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
             +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +   +    S
Sbjct: 355 -YKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFNS 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 413 ANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 457

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAKLTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 452

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLIYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 456

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 202/472 (42%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +   G   G     Q  V  +  DSR       F  I G   D H FI 
Sbjct: 1   MKNL-TLENIARVCGGTYYGPADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++ GA   +        + +   P   V+  L A+  +A     + +  ++ ITGSVG
Sbjct: 60  QVMEAGALATLSER----VLDNADFPYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L+    T    G++NN +G+PLT+ R+    +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLNQKYHTLKTQGNFNNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP   VIT I   HL N      +  AK EIF+ L   G I LN DD     L   
Sbjct: 176 AQIARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRPEGHIVLNGDDD---KLITV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                IK ++ FG S        K      +     + L   +  V     G HM  N L
Sbjct: 233 KEYEKIKPVF-FGMSNECQVYGDKIVSRGLKGMTCTIHLGDTAFTVDIPMPGRHMVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + +I     D     +    P  GR +          F ++D+ YNANP SMKA++
Sbjct: 292 AAAAVGNIYGLTTDQIKAGIESLEPISGRFRMIET----DKFLIVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL      G GR+IAVLGDM E+GE     H ++ E     +I  +  +G     + + 
Sbjct: 348 DVLQD----GAGRKIAVLGDMGELGENEVQLHEEVGEHAGKCDIDVLICTGKLCRNMAER 403

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             R+   + V Y    + L   ++  + DGD ++VK+S+   F  ++  L  
Sbjct: 404 AQRTNPDLKVIYEPDRESLLEHLEGYVQDGDTILVKASHFMKFEEVVTKLEN 455


>gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 457

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
 gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
          Length = 452

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQRGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLIYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0012]
          Length = 474

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA+   +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVESSNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
 gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
          Length = 460

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 231/470 (49%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      V  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLKALSQHLGAHRVGD--DVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAIALLVERELAFD-----IPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++  +  AHL  F     +A AK+EI+  L++ GT  +N DD+F ++++ K+ 
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAK 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF + + A     D      K  S+  +   +   G+S EVV    G H   
Sbjct: 233 HYKQ---LSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L  ++    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPTQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCTGTLTQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SHAFGAEHHDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
 gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
          Length = 457

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
 gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 214/465 (46%), Gaps = 21/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++ +A  G  +G   +    + G+  DSR I     +    G   DGHDFI     
Sbjct: 4   MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQVFD 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +   D+    G    P   V+ V  AL  +A   R +    II ITGSVGKT+T
Sbjct: 64  KGALCTLSEKDLNNPKG----PYIKVESVATALKDIAEFYRKQLSCKIIGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L    K     G+YNN IG PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 120 KEIIASVLEEKFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMHRLAKVS 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + VIT I   HL N    + +  AK E+F+   K   + LN DD     +K      
Sbjct: 180 RPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVKE---VN 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G   ++ FG   + D    K++    + + ++++   K ++ V    GYHM  N +  + 
Sbjct: 237 GHAPVF-FGIDTDRDVMAIKYESLGIQGTKVKIKYFDKELDTVIPIPGYHMIYNAMAAVC 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I S     +D     +       GR   +         T+ID+ YNANP SMKA+I+VLS
Sbjct: 296 IGSYFGMTLDEIDSGIRNLKAIGGRNNIFTT----NGITVIDDCYNANPMSMKASINVLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
           Q      GR++A+LGDM E+GE S+  H ++ +  ++  +  +   G     + + A+  
Sbjct: 352 QA----NGRKVAILGDMFELGENSKKLHKEVGQ-AAVGKVDILVCIGNLSKDIAEAAIEG 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  Y          + + + +GD V++K+SN   F  ++  L 
Sbjct: 407 GCNTLYFPNKADFEDNLSAYIKEGDTVLIKASNGMKFKTIVEKLK 451


>gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli]
          Length = 452

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALTAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
           uraniireducens Rf4]
 gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter uraniireducens Rf4]
          Length = 468

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 209/471 (44%), Gaps = 19/471 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++++A  G  IG      V+G+S DSR +A  E F A+KG  +DGHD++  AV +
Sbjct: 1   MFTIDEIIEATGGTRIGSGNDA-VSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVAR 59

Query: 64  GAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V  D          +    V D L AL  LA   R R    ++ ITGS GKTTT
Sbjct: 60  GVRAFLVAADRLAGKQPPNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+         G+ NN IG+PL L R+     + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSEPGEIDRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT    AHL +   +E +A AK E+F  L+  G    N DD     L ++  A 
Sbjct: 180 NPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDP----LISRCPAP 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  + A+      +    E     ++L G  + V     G H   N L    
Sbjct: 236 AGVKRLSFGL-RGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L  D +     L  F P + R              L+D+SYNANPASM AA+  L 
Sbjct: 295 AAHLLGVDPELIRSGLEEFTPYDKRFSLEEIR----GVVLVDDSYNANPASMAAALVTLR 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I      R IA+LGDM E+G  S + H ++  +L+   +  ++  G     +       
Sbjct: 351 DIREE--SRAIAILGDMLELGTGSVAAHREVG-LLAATCVERLYAMGEMAETVAAGAVDG 407

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                ++  + T + +   ++  +  GD ++VK S       +   + + F
Sbjct: 408 GLSPENIVVARTHEEIIADLRRRVAKGDNILVKGSRGMRMDIVAEAIRQGF 458


>gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis 62]
          Length = 457

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V       +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDV--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coprococcus catus GD/7]
          Length = 456

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 208/467 (44%), Gaps = 21/467 (4%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++  A  G        + Q    G+ IDSR I P   F A KG   DGH FI    
Sbjct: 4   MTLENIAAACGGQIYYMREDLAQETAKGVVIDSRQIEPGYIFVATKGERVDGHRFIPDVF 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  V+        +G    P   V+D   AL + A   R +    ++ ITGSVGKT+
Sbjct: 64  AKGALAVICEVLPEEDLG----PCILVEDSFMALKQAAAFYRQQLNIRVVGITGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE +   L    K +   G+YNN +G+PLT+  +  D    + E+G++  GE+  L+ +
Sbjct: 120 TKEFIAAVLVEKYKVHKTAGNYNNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEV 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I V+T I   HL N    + I  AK+EIF+ +   GT+ +N DD     +    H 
Sbjct: 180 ARPDICVMTNIGQCHLENLIDRDGILRAKSEIFDFMNPEGTVIVNGDDDKLATI----HD 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  K   +FG +K+        +      S  ++ +    +       G HM  N +   
Sbjct: 236 VYGKAPITFGMNKDNAIWADHIENRGLLGSRADIHMGDVLVHANIPLPGEHMIYNAMAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +        +     +S      GR          G   +ID+ YNANP SMKAAI +L
Sbjct: 296 AVGVQFDMTKEEITAGISHVEAVAGRSHLIE----AGDKVVIDDCYNANPVSMKAAIDLL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419
           +       GR++A+LGDM E+GE  ++ H ++ +  +   I  +   G     + + A  
Sbjct: 352 ATAP----GRKVAILGDMFELGENERAMHREVGQYAAEKGIDLILCVGGLSSEMYEGAAE 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     + E  + L   +Q  L  GD V+VK+S+S  F  ++  + E
Sbjct: 408 KGGEARHFEIREALEAVLQDLLQPGDTVLVKASHSMAFENIVQNIQE 454


>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
 gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
          Length = 452

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 215/462 (46%), Gaps = 20/462 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+   +     G         +S D+R++ P + F A+ G  +DGH+++  A++KGA 
Sbjct: 7   LADVADFLDAKHRGA--NIPFQSVSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGAS 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+++  M      +++P   V D   AL +L +  RLR +  ++AITGS GKTT K M+
Sbjct: 65  AVLISKRM-----EVTVPFLQVADTTEALGRLGLYNRLRFENPVVAITGSSGKTTVKGMM 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L    +     G+ NNHIG PLTL R+    D+ + ELG S LGEI +   L RP +
Sbjct: 120 ATLLRQQNEVLVTRGNLNNHIGAPLTLLRLSDSDDYAVIELGASGLGEIAYTAELARPTV 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +++T    AHL  F  +E I   K EI + L   G   LN D  +FE  + ++   G + 
Sbjct: 180 SILTNAGNAHLEGFGSVEGIVKTKGEIIDALADDGVAVLNADSPYFEEWQKRA---GSRR 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + SFG++ +AD +    +  +       + +  +  +V    +G H   N L        
Sbjct: 237 VISFGETLSADIRATDIQSNANGCCAFTLHINDEQSQVQLSVMGKHNVFNALACAAACVA 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L       +  L +F   EG   R           +ID+SYNANPAS++AA+ VL+  S 
Sbjct: 297 LDMPPKLIVSGLQLFEGVEG---RLLEKQGLNGSRIIDDSYNANPASVRAAVDVLASRSS 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           H     I VLGDM E+G  +   H ++        I   +  G       DA     + H
Sbjct: 354 H----TIFVLGDMAELGVETHLAHAEVGAYAREAGIDEFFALGEFSRKAADAF--GDNAH 407

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + D L  F+   L     V+VK S S    R++N ++E 
Sbjct: 408 WFASHDNLIRFLTKKLNKDVTVLVKGSRSSHMDRVVNDIVEH 449


>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
 gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
          Length = 459

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 216/464 (46%), Gaps = 13/464 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++L+A+ G  +      +  G++ D+R+I+P E F A++G  +DGH F+  A   G
Sbjct: 4   FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACING 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V+++          ++ V  V +   AL  LA   R++    ++A+TGS GKTTTK 
Sbjct: 64  ASMVIISERSSFKAVPRTVSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKN 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   ++S     A   ++NN IG+ LTL  M  + +  + E+GM  LG+I  L  +  P
Sbjct: 124 MIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQIAELCRIAAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V+T +  +H+      E IA AK E+ E L   G   LN DD +   +         
Sbjct: 184 TIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPYVIRMGDTFSG--- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  +G + N      + +  +  +        ++ +V  + +G H   N L       
Sbjct: 241 -NIIGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  DV+   KALS F    G  +++   +N    T+ID+SYNANP SM+ A   + Q++
Sbjct: 300 VLGIDVNRIQKALSEF--LPGAQRQFFTEIN--GVTVIDDSYNANPLSMEMAFHAMRQVN 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    VLGDM E+GE  + FH +L ++ +      +   G     +      +   
Sbjct: 356 GKHY---FLVLGDMGELGEKEEQFHYELGKIAANIGFDGMITVGKLSRHIAMGARDAGKT 412

Query: 425 HYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  E  T +  +  +Q  +  GDVV+VK S       ++ L  +
Sbjct: 413 NIMECTTCEDAWQRLQKMIQSGDVVLVKGSRYMHMETILELWRK 456


>gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
 gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
          Length = 474

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
 gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
          Length = 466

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 211/464 (45%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG +       F++ IS D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 18  FTLSQVVEATQGANAHTDNIKFLD-ISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 77  ATGAIVEKGRAVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         +YNN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 133 MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +     
Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 250 -KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F     R +            +++++YNANP+SM  AI  L Q+ 
Sbjct: 309 VLGIKSNTIRKGLSEFTGTPMRQEIVPFE----DIVILNDAYNANPSSMAEAIKALGQL- 363

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IA+LGDM E+G+ S+  H ++ ++L+    S V+  G     +     ++   
Sbjct: 364 --EGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 421

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  ++   +          GDV++VK S      R++  L + 
Sbjct: 422 TFRCKSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 465


>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile 630]
 gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Clostridium
           difficile]
          Length = 457

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 223/463 (48%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G 
Sbjct: 5   TIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++M
Sbjct: 65  KTFIKNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P 
Sbjct: 125 IYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNPK 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K H   +K
Sbjct: 185 IAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHVYKLK 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +KN D     +    +       + GK  E+    IG H   N +  + +   
Sbjct: 245 ---TFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLC 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +   
Sbjct: 302 LNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGR--- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
             +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +   +    S
Sbjct: 355 -YKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFNS 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 413 ANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
          Length = 459

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 222/469 (47%), Gaps = 16/469 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  ++ +A       +  +     I  D+R I P   F A KG  ++G DF+  AV
Sbjct: 1   MPAFTLDEVREATGAQLYKMEHE-EFTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAV 59

Query: 62  QKGAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KGA  V+V+T    + +  L   V   +D L A  +LA A R+R    ++AITGS GKT
Sbjct: 60  EKGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS+         +YNN IG+PLTL  +  +    + E+GM  L +I  +  
Sbjct: 120 TTKDLTAAVLSARGPVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEAMAP 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P + ++T +   H+     IE IA AK+E+ E +   GT+ LN D+ +   +  +S 
Sbjct: 180 IAAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAM--RSQ 237

Query: 241 ALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           A     + +FG  K AD + ++         ++  +++ +G+        +G H   N L
Sbjct: 238 AREGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHNVYNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +     L      A   L      + R +            +I+++YNA+P SMKAAI
Sbjct: 298 AAIAAGFALGLTPAEAASGLRNLKATKMRFEVQDVKTYH----VINDAYNASPMSMKAAI 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             LS+++   +GR+IAV+GDM E+G +S+  H ++   L+ +  + V   G     + D 
Sbjct: 354 ETLSELT---KGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVTRGQMGAFIADG 410

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   V  +++ +    ++   L  GD ++ K S      ++I+LL
Sbjct: 411 AEEGGVPQVFRADSHEAAADYLHKILEPGDTILFKGSRGMQMEKIIDLL 459


>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
 gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
          Length = 463

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 209/474 (44%), Gaps = 29/474 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G         + ++IDSR +     F AIKG   DGH FI   + 
Sbjct: 4   MSLKEIAAACGGTYHGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMD 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +   D    +G ++ P   V     AL  LA   R      ++ I+GSVGKT+T
Sbjct: 64  QGAICSLSEQD----LGDVTYPYIQVASCTEALKDLAEHYRRSLDIKVVGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+SH G++  L  + 
Sbjct: 120 KEMIASVLSEKYCVLKTEGNFNNEIGLPLTVFNLRKEHEVAVLEMGISHFGDMEPLAKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + VIT I  AHL N    + I   K  +F+ +   GT+ LN DD     L+  +   
Sbjct: 180 RPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDD---KLRGYTSER 236

Query: 243 GIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           GI+ +Y FG      F   +  K   + +         S        G HM  N L  + 
Sbjct: 237 GIQPVY-FGLDPACPFHAEQIQKMGLKGTVATFVTPSSSFSAHVSIPGDHMISNALAGVA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  I+ +    P  GR            +T+ID+ YNANPASMK+++ VL+
Sbjct: 296 VGYALGMKDEEIIRGIEKLVPIAGRNNLIEAEH----YTIIDDCYNANPASMKSSLDVLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 + R +A+LGDM E+G   +  H ++        IS +   G     + +A   +
Sbjct: 352 ----FADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLICIGTLSAEMANAARTA 407

Query: 422 IH----------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                       V++ +T +  +  +   L + D V+VK+S+   F  ++  L 
Sbjct: 408 SEASSDSDTKTLVYHFDTKEAFYRQMDQLLKEQDTVLVKASHFMEFPEIVKRLQ 461


>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 452

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 205/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  +++ A  G   G V       IS D+R+I     F A++G  +DGHDFI  A++KG
Sbjct: 4   FTLQEIIDATSGTCKGDV-SLQFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    V++ L A   LA   R R +  ++AITGS GKTTTKE
Sbjct: 63  ATAAIVEKGRSVD----GIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+         ++NN IG+P TL ++  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT +  +H+      E IA AK E+   L       LN DD F + + + +     
Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHFVKAMSSIAEG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   NA       +   +      +   +  +V    IG H   + L  +    
Sbjct: 236 -KTVTYGIHSNATVIGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAAIAAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        K LS F     R +            +++++YNANP+SM  +I  L Q+ 
Sbjct: 295 VLGVKSSKIKKGLSDFTGTPMRQEIVAFE----DIVILNDAYNANPSSMSESIKALGQL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIH 423
                R+IA+LGDM E+G+ ++  H  +  +L+    S V+  G     +  +A    + 
Sbjct: 350 --EGKRKIAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFTFGEAANFIAKEAKLAGLE 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           VH   +   +          GDV++VK S      R++  L E 
Sbjct: 408 VHRCNSHLEMANAYNDIREKGDVILVKGSRGLRMERVVEELKER 451


>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
 gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 230/469 (49%), Gaps = 20/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  ++L+A  G  +       +  I I+S+     + F  I G   DGH FI  A
Sbjct: 40  MMVDITVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESA 99

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +Q  A  +    D V            VDD + AL  +    R R    ++A+TGSVGKT
Sbjct: 100 LQVAAATLTSEHDNVVVSDKA---YIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKT 156

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+EM+T A+S+  K +   G+YN+  G P+T++RM  + D  + ELG+   GE+  LT 
Sbjct: 157 TTREMITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDAAVLELGIGEPGEMDILTD 216

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I V+TTI  AH+     +E     K  I +G+ K GT+++N DD     +K +  
Sbjct: 217 IAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGTLYINGDDPMLYAVKDEIP 276

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +Y++G  +  DF+    +     S  ++      + V    +G H  +N L+ +
Sbjct: 277 C----KVYTYGCGEGMDFRATNIRMEDGYSIYDMVHGDDVVTVKVGVMGLHNVRNSLVAM 332

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    + + KA   F      G R +     G +T+ID++YNA+P SMKA+  VL
Sbjct: 333 AVSHQLGVPYEKSSKAFENFR-----GLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVL 387

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    EGR+  VLGDM E+G+ S  +H ++ E L    I  V + G H   +K+AL  
Sbjct: 388 CDMK--CEGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVIGEHAQKIKEAL-D 444

Query: 421 SIHVHYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                Y++T+     + + +++ + +   D+V++K+SN      ++N+L
Sbjct: 445 ECDTKYAKTVSFTDTEEIAIYLMALMKPEDIVLLKASNGMNLSEVVNIL 493


>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
 gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
          Length = 452

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 211/464 (45%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG S       F++ IS D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATQGTSAHTDNIKFLD-ISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         +YNN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 236 -KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F     R +            +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFTGTPMRQEIVPFE----DIVILNDAYNANPSSMAEAIKALGQL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IA+LGDM E+G+ S+  H ++ ++L+    S V+  G     +     ++   
Sbjct: 350 --EGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  ++   +          GDV++VK S      R++  L + 
Sbjct: 408 AFRCKSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
 gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
          Length = 469

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 214/478 (44%), Gaps = 33/478 (6%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   + QA+ G  H  G      +  I+IDSR +A    F AIKG   DGHDFI    +
Sbjct: 4   MTLRAMTQAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIGQCFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+   ++     S       V+  L AL  LA+  R      ++ ITGSVGKT+T
Sbjct: 64  KGAACVISEKELPDEEHS----YIQVESSLQALKDLALLYRNNLDVKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE ++  LS   +    +G++NN IG+PLT+ R+  D +  + E+G+S  GE+  L+ + 
Sbjct: 120 KETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRLSKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT I   HL N    + I  AK EIF  +   G + LN DD     L   S   
Sbjct: 180 QPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNPDGIVILNGDDD---KLSTISQVH 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGK-----SMEVVHHGIGYHMAQNM 296
           G + +  FG S          K    + +   +          + ++     G+HM  N 
Sbjct: 237 GKRPLV-FGISNKDGVYADNIKSLGLDGTSFTIHGLDTADKYSTFDMTVPVPGHHMVYNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    + S+L        + +       GR    +    +  FT+ID+ YNANP SMKA+
Sbjct: 296 MAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIK----ENGFTIIDDCYNANPVSMKAS 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL        GR++A+LG M E+GE  +  H D+   L   +I  +  +G     +  
Sbjct: 352 LDVLDTA----IGRKVAILGSMFELGENEKQMHYDVGMYLGTKDIDVLITAGDLAAQIAA 407

Query: 417 AL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                           VH  ET D +   I   L  GD +++K+S+   F +++  + 
Sbjct: 408 GTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIKASHGMEFSKVVEAVK 465


>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
 gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
          Length = 466

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 208/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +L+A +G S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 18  FTLSQVLEATKGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 77  ATGAIVEKGRSVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 133 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +   +     
Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDRLAKG--- 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 250 -KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F     R +            +++++YNANP+SM  AI  L Q+ 
Sbjct: 309 VLGIKSNTIRKGLSEFSGTPMRQEIVPFE----DIVILNDAYNANPSSMAEAIKALGQL- 363

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IA+LGDM E+G+ S+  H ++  +L+    S V+  G     +     ++   
Sbjct: 364 --EGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 421

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 422 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 465


>gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 457

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-66c26]
 gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-76w55]
 gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-97b34]
 gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-37x79]
 gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
 gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile QCD-32g58]
 gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
          Length = 457

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 224/463 (48%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L+ A  G  I       V+ I IDSR  + Q AF AI G + DGH F+  A   G 
Sbjct: 5   TIKELVLATNGKLIYGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++M
Sbjct: 65  KTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P 
Sbjct: 125 IYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNPK 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K H   +K
Sbjct: 185 IAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHVYKLK 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +KN D     +    +       + GK  E+    IG H   N +  + +   
Sbjct: 245 ---TFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLC 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +   
Sbjct: 302 LNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGR--- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
             +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +   +    S
Sbjct: 355 -YKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFNS 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 413 ANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
 gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
          Length = 453

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 209/463 (45%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLKQIKAWIDCEIDEQYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D+      +  P+  VDD L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFYQKDVSLP-KDIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++        G+YNN IG+PLT+  +  + D  I E+GMS   EI  L+ +  P 
Sbjct: 124 IECVLNTEFNVKKTQGNYNNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAQAKSEITIGLKSNGTFIYDGDEP---LLKPHVEQIKEA 240

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              S G  + N+       +  +E     +  Q    E     +G H  +N  + + +  
Sbjct: 241 KCISIGLEQGNSLVCSVNDQVETEGIAFTINHQ---QEYELPILGIHNMKNAAIAIAVGQ 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L     T    +        R +R+         T+I+++YNA+P SMKAAI  LS + 
Sbjct: 298 ELGLSYKTIQHNIKRVKLTGMRMERHETEQQ---VTVINDAYNASPTSMKAAIDTLSNM- 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-H 423
               GR+I VLGD+ E+G+ SQ  H ++   L   +I  +   G     + +     +  
Sbjct: 354 ---NGRKIIVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLITFGSEATFIHNTGKSYVDE 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            H+    + L  ++   +   D V++K S       +++ L++
Sbjct: 411 AHHFNDKEKLISYMTHIVQPDDNVLIKGSRGMKLEEVVDALIK 453


>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
 gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
          Length = 458

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/469 (36%), Positives = 237/469 (50%), Gaps = 17/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++ QA  G +        V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MTDLWTSEEIAQATGGVASAPF---AVSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+  +         P   V D   AL  L   +R R +  ++ +TGSVGKT
Sbjct: 58  FGQGAAGAIVSQTIAQ-------PHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKT 110

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL  +   + +  + SYNNH+GVPL+L+RMP +  FG+FE+GM+H GE+  L
Sbjct: 111 GTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  VRPH+A++T IAPAH+  F   E+IA AKAEIFEGLE  GT  + YD      L AK
Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + I +FG    AD + R+        + +   L G  +       G H   N L
Sbjct: 231 AEKHAAR-ILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V  L  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM A  
Sbjct: 290 AVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMAA-- 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L Q+      RRIAVLG M E+G+ S+  H  L E L+   + +  L G  +  L  A
Sbjct: 348 -TLKQLGREQADRRIAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLVGEEMDPLAQA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L   +   +          I++ +  GD ++VK SN  G  RL+  L E
Sbjct: 407 LGGVMAFDHVPDAARAIDLIRNEMRAGDAILVKGSNGIGLSRLVAALQE 455


>gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 462

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 219/467 (46%), Gaps = 19/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q + G   G    G +  +S DSR+I  Q  F A+KG  +DGHDF+  A++ GA
Sbjct: 5   TMSVLAQHLNGTLHGQ--DGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +V    +  I    V D   A+ K+    R       +A+TGS GKT+ KEM
Sbjct: 63  VALLVDHLLVDHPFAADIAQIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS   +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + LV P 
Sbjct: 123 LATILSQHHQVLFTAGNFNNEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSSLVLPQ 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +  AHL  F  +E +A AK+EIF  L   GT  +N DD F + +  +S      
Sbjct: 183 VALVNNVGNAHLEGFGSLEGVAQAKSEIFNHLTPDGTAIINADDKFADFMLQQSQGRKHL 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +S   + +AD         +   +   +   G+   V     G H   N L    +  
Sbjct: 243 R-FSREMNVDADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLHQVSNALAAASMCI 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +    +  ++  P +GR + +      G   LID+SYNANP S+ AAI+ L Q  
Sbjct: 302 ALDISLYDIAQGFALLKPVKGRMQPHDL----GRVLLIDDSYNANPTSVSAAINWLQQ-- 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G R  VLGD+ E+G+ +   H  +   +    I  ++  G       +A       
Sbjct: 356 --RDGYRCLVLGDLGELGDNAAPLHASIGLQVKNAAIESLFCCGQLSANTSEAFGSE--- 410

Query: 425 HYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468
           H+    + L + +Q  L        V+VK S S    R+++ LL+ +
Sbjct: 411 HFCAQ-EPLIVALQKQLASTTGNITVLVKGSRSAAMERVVDSLLDAY 456


>gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
 gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea]
 gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
          Length = 455

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 224/466 (48%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL     + Q +    +G         +S DSR+I  Q  F A+KG  +DGH+F   A
Sbjct: 1   MIPL-NLSGICQRLNARLVGA--DVEFCHVSSDSRAIPEQTLFVALKGDKFDGHNFANTA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+ ++      L+I    V D   A+ +L    +   +   +A+TGS GKT
Sbjct: 58  VENGAIALLVDHELP-----LNITQVIVKDTQRAMGELGAYLKELIQPRSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+  D +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +E +ASAK+EIF  L  TGT  +N DD F  ++ A S 
Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLEGVASAKSEIFNHLTPTGTAIINADDGFASVMLAAST 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                T  +FG    AD Q    +      +  ++    +++ +     G H   N L  
Sbjct: 233 DY---TQLTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIALPLPGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I       +D      S+  P +GR    +     G   +ID+SYNANPAS+ AA+  
Sbjct: 290 TAICLSFGLTLDEIKLGFSLLVPVKGRMLPTQL----GRVRVIDDSYNANPASVTAAVDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I    EG R  VLGD+ E+G+ +   H +L E+     +  +   G        A  
Sbjct: 346 LHEI----EGHRCLVLGDLGELGDNAPLLHTELGELARQKGLDSLLTLGELSANASSAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              ++     ++ L   I+  L     V+VK S S    R++  L+
Sbjct: 402 VDGYISLELLLEDLIKNIKQ-LQGNVTVLVKGSRSARMERVVEALI 446


>gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Kitasatospora setae KM-6054]
          Length = 467

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 213/477 (44%), Gaps = 24/477 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  +  QA+ G   G  PQ  + G +  D+R I P   F  ++G   DGHD+   
Sbjct: 1   MIAL-TLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVG 118
           AV  GA  V+           + +P   VDDV+ AL +LA A   R+    I+ +TGS G
Sbjct: 60  AVADGAVAVLATRP-------VGVPAILVDDVVVALGRLARAVVARAADVRIVGLTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L+   +T    GS NN IG PLT  R+       + E+G  H G+I +L
Sbjct: 113 KTSTKDLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPSTRHLVMEMGARHKGDIEYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P + ++  I  AHL  F   E IA AK E+ E L   G   LN DD     + ++
Sbjct: 173 TGITPPTVGLVLNIGTAHLGEFGSREGIAEAKGEMVEALSPEGVAVLNADDPLVRAMSSR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG+S +A  +    +  +       +     S  V     G H   N L
Sbjct: 233 TRA----RVVLFGESPDAHVRATDVRLDATGRPQFTLSTPAGSAPVRLRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   VD   +ALS          R          T+++++YNANP SM+AA+
Sbjct: 289 AAAAVAVELGMPVDRVAEALSEAGALSRW--RMEVVDRADGLTVVNDAYNANPESMRAAL 346

Query: 358 SVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             L+ ++  G  RR   AVLG+M E+GE S   H  +  +    +I+ +   G    A  
Sbjct: 347 RALATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRLDITKLVAVGGREAARM 406

Query: 416 DALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   R               D     ++S +  GDVV+VK+S S G  R+   LL +
Sbjct: 407 ELGARNEGSWGEESVLVSDADAAIELLRSQVRPGDVVLVKASRSVGLERVAEALLAD 463


>gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
          Length = 475

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 180/465 (38%), Positives = 259/465 (55%), Gaps = 5/465 (1%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   LWT  + + A  G  +G       +G++ID+R++ P + F A+ G   DGHD++  
Sbjct: 1   MTAVLWTRAEAVVATGGTPLGR--DWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQ 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+Q GA   +V+        S   P+  V D L  L +L  AAR RS A I A+TGSVGK
Sbjct: 59  ALQTGASAALVSRRPADLAAS--APLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T +KEML  AL++   T+A  G+ NNHIG PL+LAR   D  F +FELGM+H  EIR L+
Sbjct: 117 TGSKEMLAAALAAYGTTHASKGNLNNHIGAPLSLARFSRDAAFAVFELGMNHPEEIRPLS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LVRPH A+IT +   H   F+GIE+IA AKAEIF+GLE  GT+ LN D+S F  L   +
Sbjct: 177 RLVRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L I+ I  FG   +A+ +L         + ++ ++ G+ M     GIG H A N L  
Sbjct: 237 GRLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D    + AL       GRG + + +L  G  TLIDESYNA+P +++AA++V
Sbjct: 297 AATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPPAVRAALAV 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            ++  P    RRIAVLGDM E+G  +   H  LAE +       V+L G  + AL  ALP
Sbjct: 357 FAETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFLVGPEMAALAAALP 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++   ++++ + L   + +++  GDVV+VK S       +++ L
Sbjct: 417 AALVAGHADSSEALAATVAAAVAPGDVVLVKGSLGMRMKAIVSAL 461


>gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
 gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
          Length = 474

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GK TTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0630]
          Length = 474

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +         + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 21  TFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 80  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
 gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
          Length = 452

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 215/470 (45%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F A+ G  +D HDF   A
Sbjct: 1   MIPV-SLKTLAEITGGTLHG--SDFTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +  +     +P   V+D   A  +L    R +S A ++A+TGS GKT
Sbjct: 58  IANGAQALLVSKHLPVA-----VPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P  A++  +A AHL  F  +  +A AK EIF+GL   G   LN  D   + L  + +
Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPAHGIAILN--DESNDWLNWQ-N 229

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L  KT++ F  ++   DF  R  +   + +   +     + E+V    G H   N L  
Sbjct: 230 TLQDKTVWRFSPQAGECDFSARDIRIAQDGTHFVMNTPRGTAEIVLPLPGRHNIANALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L       GR    R + +Q    L+D+SYNAN  SM AA+ V
Sbjct: 290 AALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQ---LLLDDSYNANVGSMTAAVQV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS++     G ++ V GDM E+GE ++  H ++ E      +  V   G     + +   
Sbjct: 347 LSEMP----GYQVLVAGDMAELGEETEKCHREIGEAAREAGLDRVLTCGKFSHFISE--- 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            S    +      L   ++  L       V++K S S    +++  L E+
Sbjct: 400 NSGVGEHFSDKTALTERLRELLSQHSEITVLIKGSRSAAMEQVVQSLKEK 449


>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale DSM 17629]
          Length = 464

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/476 (27%), Positives = 205/476 (43%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L TF ++ +A +G  IG        + G  IDSR +     F  IKG   DGH FI 
Sbjct: 6   MKNL-TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIP 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +  ++GA +V+   ++    G    P   V     A+ KLA   R      ++ ITGSVG
Sbjct: 65  NVFEQGAAIVLSEHELKDPAG----PYVLVGSTTDAMKKLAAFYRKSLDIKVVGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L
Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P + VIT I   HL      + +  AK E FE +       LN DD       A 
Sbjct: 181 STMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKL----AT 236

Query: 239 SHALGIKTIYSFGKSKNAD----FQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +  K    +GK   +D          +    +             +   H  G H  
Sbjct: 237 VQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAQIHIPGEHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +    +   L   +      +       GR    +        T+ID+ YNANP SM
Sbjct: 297 YNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKT----HGMTVIDDCYNANPVSM 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K++I VLS    H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G     
Sbjct: 353 KSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKE 408

Query: 414 LKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                      + +HY E  + +   + S + +GD ++VK+S+   F +++  L E
Sbjct: 409 YAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464


>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
 gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
          Length = 509

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/518 (30%), Positives = 255/518 (49%), Gaps = 66/518 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+     S      P+  V D L AL+ +A          A +IA+TGSVGKTTT
Sbjct: 64  AVAAIVSEGKYKSF-----PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+ +GEI+ L+ + 
Sbjct: 119 KDMLHTVLSQYGVSHASEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L + ++  
Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHAN-- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWM----------EVQLQGKSMEVVH------- 285
             + + SFGK KNA+  L    +  E S +          +    G S+   H       
Sbjct: 237 --RNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNK 294

Query: 286 -----------------------------------HGIGYHMAQNMLMTLGIVSILTADV 310
                                                 G H A ++L    +V  L  D+
Sbjct: 295 DWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDL 354

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S     R
Sbjct: 355 SKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ---R 411

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           ++A+LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   +    
Sbjct: 412 KVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDS 471

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + L   + + + + D ++VK S       ++   + ++
Sbjct: 472 NQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 509


>gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 455

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 209/466 (44%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ QA+     G   +  +  ++ DSR I+    F  IKG   DGHDF+  A++ G
Sbjct: 3   MQLAEIAQALNTSCEGDA-ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             I V  V D L A+  LA     +   T+++ITGS GKTTTK+
Sbjct: 61  ASATLWEAGNPNKPEG--IAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP
Sbjct: 119 MVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLVRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   ++IA AK EI + L++ G    N D+       AK      
Sbjct: 179 DVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEPLLAERAAKLPQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG + +        +     S+ ++   G   E     IG H   N +  + +  
Sbjct: 239 ----TFGFADSDSIHASDLRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +     L+ F P      R           ++ + YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGESDEEIAAGLANFVPTA---NRMEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVP 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
              +GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      
Sbjct: 350 VSEDGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQ 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +++H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 410 QNLHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
 gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
          Length = 475

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 212/479 (44%), Gaps = 19/479 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P ++  +LL+A+ G  +       + G+S D+R +     +  +KG ++DGHDF+  AV
Sbjct: 6   TPQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAV 65

Query: 62  QKGAGLVVVNTDMVA-----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +KGAG V+V+          S  +       VDD L AL  LA   R      +IAITGS
Sbjct: 66  KKGAGGVLVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPVIAITGS 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTKEM    L          G+ NN IG+PLTL RM    D  + ELG +  GEI+
Sbjct: 126 SGKTTTKEMTAAILEQTFSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGTNARGEIK 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  P I ++T I PAHL     +E I   K +++  + K+G    N DD     L+
Sbjct: 186 RLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADDEAMAPLR 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                     + ++G +  AD       +  E      +    +S  V     G H   N
Sbjct: 246 RSWQG----KMLTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMHNIYN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +       ++   + L  FHP      R+          L+D++YNANPAS++ 
Sbjct: 302 ALAAAALSRAAGIGINEISQGLRNFHPVAA---RFEVHFLPNGAFLVDDTYNANPASVRE 358

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  +  +  +   R + VL DM E+G+ ++  H  +    +  ++  ++L G    +  
Sbjct: 359 ALKTIQTLKGNH--RSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSLSRSTA 416

Query: 416 DALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +       + + E  + +   + S +  GD ++VK S       ++  +L+  PA
Sbjct: 417 AGAIKGGMTEERILFFEDPEEILDDVLSFVEAGDWILVKGSRLMKMEEIVKKILDRTPA 475


>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 471

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 220/472 (46%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ +   + Q +QG  I     I     + G+S D+R I P + F A+ GP++DGH F
Sbjct: 1   MIPV-SLTWIAQQVQGELIRSEKSIAANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A Q GA  V+V+  +   +         V D   AL +L  A +       +AITGS
Sbjct: 60  IDTAAQGGAVAVIVSRKVDTELA-----QILVSDTKEALGRLGQAIKREVAPKTVAITGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM+   LS   K  A  G++NN IGVPLTL R+  D +F + ELG +HLGEI 
Sbjct: 115 SGKTTVKEMVAAILSRRGKVLATKGNFNNDIGVPLTLLRLEADHEFAVVELGANHLGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P +A I   A AHL  F  +  +A AK+EIF+GL K G    N D  F+    
Sbjct: 175 YTTELVKPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWH 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
            K   L  +   +F     AD+  +         +   +      + +     G H   N
Sbjct: 235 GKYEHLRNQ---AFSTKDEADYYAQDVVLGLNGCADFLMVTPLGKVSISLPLPGLHNVSN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L++  +   + A++      L       G   R +     G   ++D++YNAN AS+ A
Sbjct: 292 ALVSAALAIEVGANLQDVQAGLQYMAQVSG---RLQVKQLSGQVKVLDDTYNANVASVNA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI +L   +    GR++ VLGDM E+GE ++ +H  + E      I  ++  G    +  
Sbjct: 349 AIDLLGSFA----GRKVLVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSAS 404

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
           D   +S   ++    D L   +  +L     D+ ++VK S S     ++  L
Sbjct: 405 DVYQKS--GYHFSDKDKLVAALAENLTTEKRDISILVKGSRSARMELVVEAL 454


>gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
 gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 213/476 (44%), Gaps = 29/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL T   L     G              ++ +S DSR I     F A+KG  +D HDF
Sbjct: 1   MIPL-TLAQLAAVTAGRLFNAEGIDAATLTLSEVSTDSRQIGQDCLFIALKGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               V+ GA  ++V  ++      +  P   V +   ++ +LA   R +S+A ++ +TGS
Sbjct: 60  APSVVENGAVALLVEREL-----DVDCPQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    LS   KT    G+ NN IGVPLTL R+  + D+ + E+G +H  EI 
Sbjct: 115 SGKTSVKEMTASILSQRGKTLYTAGNLNNDIGVPLTLFRLTHEYDYAVIEMGANHPNEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T++V+P  A++  +  AHL+ F   E +A AK EI++GL   GT  +N D S+    +
Sbjct: 175 YTTNIVKPESALVNNLFAAHLAGFGSPEGVARAKGEIYQGLPDEGTAIVNLD-SYSPHWQ 233

Query: 237 AKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +      +T++ +       ADF     +     +   +      + +     G H   
Sbjct: 234 FQPR----QTVWYYSLKPQDKADFYPSDIEVKQLSTNFTLHTPVGQIAITLPLPGMHNIA 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L    +   + A ++     L+      GR    + +  +    ++D++YNAN  SM 
Sbjct: 290 NVLAASALAISVGATLEDIRNGLATTKAVPGRLYPVQLSPTK---VVLDDTYNANDGSMI 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+VL+++     G RI + GDM E+G+ +Q  H  +        +  V   G     +
Sbjct: 347 AAINVLAKMP----GYRILIAGDMGELGDYAQDCHQRVGIAAKDAGLDKVLSVGTLSEMI 402

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEF 468
                   H  + +    L   +   +   +VV  +VK S S     ++N L E F
Sbjct: 403 SQFSECGEHFAFKKD---LLTRLIPLVQQNEVVSILVKGSRSSAMEDVVNALKECF 455


>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
 gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
          Length = 469

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 217/472 (45%), Gaps = 21/472 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             ++T +++ +A  G  IG    G  + +S DSR +AP E F A++G  +DGHDFI+ AV
Sbjct: 1   MAMFTLNEIAEATGGRVIGEA-AGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAV 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            KG  + +      A            V D L AL  LA   R R     + +TGS GKT
Sbjct: 60  SKGVTIFLAEESWAAKHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+         G+ NN IG+PLT+ R+     + +FE+GMS  GEI  L  
Sbjct: 120 TTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAE 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P + +IT   PAHL     +E +A AK E+F  L+       N DD          +
Sbjct: 180 IAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPTHLN 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                T  +FG  + A+      +   ++     ++L     +V     G H   N L  
Sbjct: 240 V----TRLTFGL-RGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L    D   + L  F P + R +    A      TLID+SYNANPASM AA++ 
Sbjct: 295 AAAAHALGVPGDLIRQGLEEFSPYDKRFQLEEVA----GVTLIDDSYNANPASMAAALTT 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----AL 414
           L ++     GR +AVLGDM E+G  ++  H +L ++ +  N+  ++L G  V      AL
Sbjct: 351 LKELQGE--GRLVAVLGDMLELGLGTEEAHRELGKLAAG-NVDRLYLLGKLVEETAKGAL 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  LP +  V      D L   + S +  GD ++ K S      ++  L+ +
Sbjct: 408 EAGLPAADLVL-GRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQ 458


>gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
          Length = 450

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 216/471 (45%), Gaps = 28/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L     +     G+ +       +  ++ID+R +     F A+KG  +DGHDF   A
Sbjct: 1   MSELLNAELIATDKGGNHL------EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V+  ++     +  P   V D   AL + A   R +  A ++A+TGS GKT
Sbjct: 55  VTAGAGALLVSKRLL-----VGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 110 SVKEMTAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEYDFAVIELGANHVGEIAYTTD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 170 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               K ++ F    +++ DF     +   + +   +     ++ +     G H   N L 
Sbjct: 230 N---KRVWRFAPQAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHNIANGLA 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + AD+    + L       GR    + A  +    L+D++YNAN  SM AA  
Sbjct: 287 AAALAMSVGADLAAVRQGLMQLQAVPGRLFPIQLAAGK---LLLDDTYNANVGSMTAAAQ 343

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+G+ +   H  + E      I  V   G     L DA 
Sbjct: 344 VLAEMP----GYRVMVVGDMGELGDTAIDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDA- 398

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
             S +  + +    L   +   L +  V  V++K S S     ++  L E+
Sbjct: 399 --SGNGEHFQDKSALAARVSELLSEHPVITVLIKGSRSAAMENVVRALQEK 447


>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale M104/1]
          Length = 464

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/476 (27%), Positives = 205/476 (43%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L TF ++ +A +G  IG        + G  IDSR +     F  IKG   DGH FI 
Sbjct: 6   MKNL-TFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFIP 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++GA +V+   ++    G    P   V+    A+ KLA   R      ++ ITGSVG
Sbjct: 65  TVFEQGAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L
Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P + VIT I   HL      + +  AK E FE +       LN DD       A 
Sbjct: 181 STMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMPDAVAVLNADDDKL----AT 236

Query: 239 SHALGIKTIYSFGKSKNAD----FQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +  K    +GK   +D          +    +             +   H  G H  
Sbjct: 237 VQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAHIHIPGEHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +    +   L   +      +       GR    +        T+ID+ YNANP SM
Sbjct: 297 YNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKT----HGMTVIDDCYNANPVSM 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K++I VLS    H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G     
Sbjct: 353 KSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKE 408

Query: 414 LKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                      + +HY E  + +   + S + +GD ++VK+S+   F +++  L E
Sbjct: 409 YAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464


>gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           loihica PV-4]
 gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella loihica PV-4]
          Length = 456

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 225/474 (47%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL    +L + +    IG      V+ +S DSR +  Q  F A+KG  +D HDF   A
Sbjct: 1   MIPLK-LSELAKVLNAKHIGD--DLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++  +      P   V +   A+ ++    +       +A+TGS GKT
Sbjct: 58  VMDGASALLVERELPIAA-----PQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN +GVPLTL R+    ++G+FELG +HLGEI + + 
Sbjct: 113 SVKEMVATILSTQHQVLYTAGNFNNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +E +A AK+EIF  L K G   +N DD+F ++++    
Sbjct: 173 LVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAFADVMR---R 229

Query: 241 ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           A    T  SF    N AD    +    +   +   +    +   V     G H   N L 
Sbjct: 230 AAASHTQLSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVSLPLSGRHQVSNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I   L   +D  ++ L    P +GR +  R     G F LID++YNANPAS+ AAI 
Sbjct: 290 ATSICLALGLSLDEIVQGLMRLQPVKGRMQPTRL----GRFLLIDDTYNANPASVGAAID 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +I    EG R  VLGD+ E+G+ +   H  L E      I  ++  G    A  +A 
Sbjct: 346 WLQEI----EGNRCLVLGDLGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRASSEAF 401

Query: 419 PRSIHVHYSETMDGLFLFIQ---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                  +   +D L + +    + L     V+VK S S    R++  L+  F 
Sbjct: 402 AGK----HFTDLDALVVDLVSYFNQLTGKVTVLVKGSRSARMERVVEALIAAFE 451


>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
 gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
          Length = 457

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 222/463 (47%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G 
Sbjct: 5   TIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++M
Sbjct: 65  KTFIKNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P 
Sbjct: 125 IYSAISAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEIKYLVDIVNPK 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVI+ I  +H+      E I  AK EI    ++  T+ +N DD F   LK K H   +K
Sbjct: 185 IAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTLKEKEHVYKLK 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +KN D     +    +       + GK  E+    IG H   N +  + +   
Sbjct: 245 ---TFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLC 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D   K L  F   +G   R     N+   T+I++SYNA+P SM AA+ +L +   
Sbjct: 302 LNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGR--- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
             +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +   +    S
Sbjct: 355 -YKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFNS 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 413 ANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
 gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
          Length = 457

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 210/473 (44%), Gaps = 24/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +A +G   G   +    V G+ IDSR +     F AI G + + H FI 
Sbjct: 1   MKNL-TLENITKACKGVYHGDESKLGREVGGVVIDSRKVQKDYLFVAIDGENVNAHQFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++KGA  V+ + D    +G        V+    AL  +A   R      ++ ITGSVG
Sbjct: 60  DTIEKGALCVISHED----LGDTDFSYILVESTGQALLDIAKLYRDSFDVKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   ++   K +  IG++NN  G+PLT+  +  D    I E+G++H GE+R L
Sbjct: 116 KTSTKEMIASVVAQKYKVHKTIGNFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  GTI  N DD     L ++
Sbjct: 176 SSVASPDICVITNIGVAHLEFFKTREGILQEKSKMIQDMKDGGTIIFNGDDD----LLSQ 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGK-SMEVVHHGIGYHMAQNM 296
           +  +   T   FG   N  F     +      +   + L  + S E V    G HM  N 
Sbjct: 232 AGPIKGATPILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEYSFECVVPLPGTHMISNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   L    +     +       GR    +         ++D+ YNANP SMKAA
Sbjct: 292 LAGAAVGYTLHLTSEEIKAGIEGLPSIPGRNNIIKT----DRLIILDDCYNANPVSMKAA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL        GR++AVLG+M E+G   +  H ++ E  + + I  V   G     L D
Sbjct: 348 IDVLDMA----IGRKVAVLGNMGELGNNEKVLHREVGEYAAAHGIDLVCGIGHLAKELVD 403

Query: 417 AL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  S    + E        ++  + DGD V+VK+S+      ++  L  
Sbjct: 404 GATNGSSSTRGLWFENKADFLDAMKDLIKDGDNVLVKASHGMDLTTIVEALKN 456


>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 452

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   +G + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQKGTPID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +             +G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCCVDDRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T              G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTI---YQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIGVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 457

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF ++ QA++  +         + GI  DSR I     F  ++G + DGH FI  A+  G
Sbjct: 4   TFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                   D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK+
Sbjct: 63  CQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +P
Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K      
Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI  
Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K L+     + R +  + A       ++ + YNANP +M   +   S++S
Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     P
Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 455

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 205/466 (43%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ QA+     G   +  +  ++ DSR I+    F  IKG   DGHDF+  A++ G
Sbjct: 3   MQLAEIAQALNTSCEGDA-ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             I V  V D L A+  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  ASATLWEAGHPNKPEG--IAVLEVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP
Sbjct: 119 MVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+      ++IA AK EI + L++ G    N D+       AK      
Sbjct: 179 DVAVITMIGEAHIEFLGSRDKIADAKMEITDFLQEDGEFIYNGDEPLLAERAAKLSQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG + +        +     S+ ++   G   E     IG H   N +  + +  
Sbjct: 239 ----TFGFADSDSIHASDLRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +     L+ F P      R           ++ + YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGESDEEIAAGLANFVPTA---NRMEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVP 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      
Sbjct: 350 VSEGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQ 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +++H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 410 QNLHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           sp. W3-18-1]
 gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens CN-32]
 gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. W3-18-1]
 gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +  H +G      +  +S DSR +     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLEVLSQHLGAHRVGN--DVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++      L+IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELA-----LNIPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKYQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F +++  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADVMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                    F + + A     D      K  ++  +   +   G+S +V     G H   
Sbjct: 233 PYKQLH---FSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +      LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQL----GRIRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHHESVAVLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/518 (30%), Positives = 253/518 (48%), Gaps = 66/518 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+     S      P+  V D L AL+ +A          A +IA+TGSVGKTTT
Sbjct: 64  AIAAIVSEGKYKSF-----PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ + 
Sbjct: 119 KDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L + ++  
Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHAN-- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWM----------EVQLQGKSMEVVH------- 285
             + + SFGK KNA+  L    +  E S +          +    G S+   H       
Sbjct: 237 --RNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNK 294

Query: 286 -----------------------------------HGIGYHMAQNMLMTLGIVSILTADV 310
                                                 G H A ++L    +V  L  D+
Sbjct: 295 DWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDL 354

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S     R
Sbjct: 355 SKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ---R 411

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           ++A+LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   +    
Sbjct: 412 KVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDS 471

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           + L   + + + + D ++VK S       ++   + ++
Sbjct: 472 NQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 509


>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosomonas eutropha C91]
 gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosomonas eutropha C91]
          Length = 457

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 211/468 (45%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +   A+  +S          G+S DSR++ P + F A+ G  +DG  FI  A++K
Sbjct: 1   MMSVQEAALALHANSNWSGGNPIFTGVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+TD V            V+D      +LA   R      ++A+TGS GKTT K
Sbjct: 61  GAVAAMVSTDTVIVPTKSDFGWIKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVK 120

Query: 124 EMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+              A  G+ NN IGVP  L ++       + E+GM+H GEI +L+ 
Sbjct: 121 EMIAAIFRHEFGSGNVLATTGNLNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQ 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P IAVIT    AH+ +    E IA AK EIF GL   G   +N DD++ +L +  + 
Sbjct: 181 LAAPTIAVITNAGTAHIEHLGTTEAIARAKGEIFTGLGAQGIAIINADDAYAQLWRQLA- 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + I  FG +  A  + ++    SE +W+ +QL    +E+     G H   N L   
Sbjct: 240 --GSRQILDFGITNPAAIRAQQMSSSSEAAWL-LQLPDDKVEITLQVPGRHNIYNALAAA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +       +  + L  F    G   R +  +      LID++YNANP SM+AA++VL
Sbjct: 297 AAATAAGISTTSIAEGLHNFMGTPG---RLQKKVGLYQSILIDDTYNANPDSMQAALNVL 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G++I ++GDM E+G  +  FH  + +  +   I  +   G            
Sbjct: 354 AEMP----GKKILIMGDMGELGTDAAGFHYTIGQQAAKAGIDALLALGELSQQTVAGFGS 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                Y   +D L    +  L     V+VK S      R+I  L + +
Sbjct: 410 G--AQYFADLDTLLEKAKDCLGKNVSVLVKGSRFMRMERVIEQLQDRY 455


>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
 gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
          Length = 454

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/460 (30%), Positives = 211/460 (45%), Gaps = 19/460 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L   +QG   GI      +G+S D+RS+AP   F  ++G  +DGH FI  A +KG
Sbjct: 7   MGLAELASVVQGRLQGI--NIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   ++   +        +P   V D   AL +LA   R R    I+A+TGS GKTT KE
Sbjct: 65  ASAALLEQRINDP-----LPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L  ++   A  G+ NN IGVPLTL  +     F + E+G +  GEI +L+ L RP
Sbjct: 120 MIASILGWVEPILATRGNLNNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +  +   G 
Sbjct: 180 QVALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPHFSYWRDLA---GG 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG S++A+   R     ++ S   +      +++     G H   N L       
Sbjct: 237 LPVMGFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAAI 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      +L+      G   R +     G   L+D++YNANPAS++AA+ +L++  
Sbjct: 297 ALGVDRQHLSASLAALPSIPG---RLQIRRGIGGMRLLDDTYNANPASLQAALELLAKFP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGD  E+GE +   H  + +      ++ ++  G        A  R    
Sbjct: 354 ----GERALVLGDFAELGEEAAPLHQAMGKQARAAGVNRLYTLGRLGAFAAKAFGRGAS- 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H+ E    L   +Q  L     V+VK S      +++  L
Sbjct: 409 HFLE-RQPLLAALQEELHPDITVLVKGSRCMYMEQIVAAL 447


>gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 479

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/479 (30%), Positives = 210/479 (43%), Gaps = 23/479 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    I  P   V G + IDSR + P   F A+ G   DGHDF  
Sbjct: 1   MIAL-SLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGERVDGHDFAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++ GA  V+             +P   V DV+ A+  LA A   R  AT++A+TGS G
Sbjct: 60  KAIEAGATAVLAAR--PVGTADAPVPAIVVPDVIAAMGALARAVVERLDATVVALTGSAG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT           + E+G    G IR+L
Sbjct: 118 KTSTKDLIAQLLQRRGPTVWTPGSLNNEIGLPLTAMSADEATLHLVLEMGARGKGHIRYL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
             L  P I ++  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 178 ATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEEGGVAVLNADDPLVRAM 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A        FG++++AD +    +          +       EV     G H   
Sbjct: 238 MSRTKA----RTVLFGEAEDADVRAGNVRLADGGRPAFTLHTPTGCSEVTMRLYGEHHVS 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   VD    ALS          R          T+++++YNANP SM+
Sbjct: 294 NALAAAAVAHELGMSVDEIAVALSEAGQLSRW--RMEVTERSDGVTVVNDAYNANPESMR 351

Query: 355 AAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
           AA+  L  +     GRR  AVLG M E+GE S + H  +  +    N+S +   G     
Sbjct: 352 AALRALVAMGAATPGRRTWAVLGQMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAA 411

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + A  +       VH S+ +      ++S L  GDVV+VK+S S G  RL   LL+
Sbjct: 412 WLDMGAKNEGSWGEESVHVSD-VRAAVDLLRSELRPGDVVLVKASRSVGLERLAQALLD 469


>gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 455

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 208/466 (44%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ QA+     G   +  +  ++ DSR I+    F  IKG   DGHDF+  A++ G
Sbjct: 3   MQLAEIAQALNTSCEGDA-ETVITSVAFDSRKISQGALFIPIKGER-DGHDFVGSAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             I V  V D L A+  LA     +   T+++ITGS GKTTTK+
Sbjct: 61  ASATLWEAGNPNKPEG--IAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP
Sbjct: 119 MVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   ++IA AK EI + L++ G    N D+       AK      
Sbjct: 179 DVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEPLLAERAAKLPQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG + +        +     S+ ++   G   E     IG H   N +  + +  
Sbjct: 239 ----TFGFADSDSIHASDLRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +     L+ F P      R           ++ + YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGESDEEIAAGLANFVPTA---NRMEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVP 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
              +GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      
Sbjct: 350 VSEDGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQ 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +++H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 410 QNLHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
 gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
          Length = 452

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 208/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +L+A +G S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVLEATKGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRSVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +   +     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDRLAKG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 236 -KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F     R +            +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFSGTPMRQEIVPFE----DIVILNDAYNANPSSMAEAIKALGQL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IA+LGDM E+G+ S+  H ++  +L+    S V+  G     +     ++   
Sbjct: 350 --EGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 453

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 213/465 (45%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      ++ +S D+R +A    F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIG--ESIDIDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      +++P   V D   AL +L    R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHLP-----INVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRHCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F   +     L  K
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPADGVAIVNADSNDFPHWQVM---LNHK 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F        DF        ++ +   +       +V+    G H   N L    + 
Sbjct: 235 TVWRFSPQAACDIDFFASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     LS      GR      +  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 295 MSVGATLEAVKAGLSQLQAVPGRLFPIALSEGK---LLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +   H  + E      I  V   G     +  A   S +
Sbjct: 352 P----GYRVMVVGDMGELGDEAPECHRQVGEAARAAGIDRVLSVGTLSELIGTA---SGN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
             + +    L   ++  + + +V  V++K S S    ++++ L E
Sbjct: 405 GEHFQDKAALVSRLKVLMSEHNVISVLIKGSRSAAMEQVVHALQE 449


>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 459

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 212/474 (44%), Gaps = 27/474 (5%)

Query: 5   WTFHDLLQAIQGHSI-----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            T   + Q ++G  I       +    + G   D+R +     F  + G   DGHDFI  
Sbjct: 4   MTLAHVAQVVKGQLILPEGREALKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGHDFIED 63

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  KGA   +    +    G    P   V+D   AL ++A   R++    +I + GSVGK
Sbjct: 64  AFSKGALASLSERKLENVSG----PYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEML+  L++        G++NN IG+PLT+ R+  +    + E+G+S  GE+  L 
Sbjct: 120 TSTKEMLSSVLATKFNVLKTEGNFNNEIGLPLTICRIKDEHQVAVVEMGISDFGEMHRLG 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P   V+T I   HL      + I  AK E+FE + K GT+ LN DD         +
Sbjct: 180 DIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEHMPKNGTVILNGDDDKL----INA 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             LG+  I+ +G +   +             +   + L G+S E      G H   N L 
Sbjct: 236 DTLGLNKIF-YGLNGQ-EVSASDIVAEGMTGTRAVINLFGESFEATIQLPGTHNVMNALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +  +L    +   K L       GR             T+ID+ YNANP SMKA+I 
Sbjct: 294 AAAVGKVLGLSNEEIKKGLEKASTIAGRNNVIEVR----DITIIDDCYNANPVSMKASIE 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL +      GR IAVLGDM E+G+  +  H ++ + L   +I +V+  G     + ++L
Sbjct: 350 VLGKAP----GRTIAVLGDMGELGDDERQLHYEIGQTLEDNHIGYVFTVGDLSEEINNSL 405

Query: 419 PR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            +   S   H+   ++ +   +   +  GD ++VK+S+   F  ++  +   F 
Sbjct: 406 SQKNSSCMAHHYTNVEAMLEDLLPIIRGGDTILVKASHFMNFSTVVEAIQTRFE 459


>gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia fergusonii B253]
          Length = 452

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELKGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli M863]
 gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli STEC_7v]
          Length = 452

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELKGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS678]
          Length = 460

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 225/470 (47%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        IP   V D   A+  + V  R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELAFD-----IPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF +   A     D      K  ++  +   +   G+S +VV    G H   
Sbjct: 233 PYKQ---LSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     +   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHYDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
 gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
          Length = 473

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 207/466 (44%), Gaps = 14/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +     G           + G+  DSR+I P   F  I G  +DGH+F+   +  G
Sbjct: 5   SLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG      D         +P+  V+D L AL  LA      S+A ++ ITGS GKTT K+
Sbjct: 65  AGAAFWQRDHQPVPAD--LPLILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +    +   G+YNNHIG+PLT+  M  D D  + E+GMS   EI  L+++ RP
Sbjct: 123 MVSALLETTYNVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT +  AHL      EEIA AK EI  G++  G +  + D+     + A+   +  
Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKP 242

Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +    Y+FG     D         +       +L           +G H   N L  + +
Sbjct: 243 EGLRTYTFGNQDTNDDYPTGLMFHARGIIFTSRLHAGEG-FSLPLLGRHNVVNALAAMAV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + L    +      S F   +    R          T+++++YN++P ++KAA+ VL  
Sbjct: 302 AAHLGIGDEAI---RSGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGD 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           +  +   RRIAVLGDM E+G+  +SFH ++ + LS  N   V+  G   L   +      
Sbjct: 359 MKGY--RRRIAVLGDMLELGQREESFHAEIGDYLSPDNADLVFTYGPLSLHTANKAKARF 416

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V      + L   +   + + D+V+VK+S       +++ L 
Sbjct: 417 PEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRGMRLEHVVDALK 462


>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
 gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
          Length = 462

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/466 (37%), Positives = 255/466 (54%), Gaps = 10/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  D ++A  G S         NGISID+R++   + F A+K    DGH++I  A
Sbjct: 1   MS-LWSSKDAVKATSGVSRI---NWVANGISIDTRTLKMGDLFVALKDQR-DGHEYIKIA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   +V+   V      ++P+  VDDVL AL  +A  AR R++A +I ITGSVGKT
Sbjct: 56  FENGAAAALVSR--VPDGLDENLPLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L +  KT+A   SYNNH GVPLTLARMP + DF + E+GM++  EIR L  
Sbjct: 114 STKEMLKSILIANGKTHAAERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +  +A++  +AP HL  F  IE IA AKAEIFE L  +    +N D S F++L     
Sbjct: 174 LAKLDVAIVLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQ 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  K + +FG +  AD++L    +   ++++  ++            G H A N +   
Sbjct: 234 KVRSK-LITFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVF 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +  +        S +    GRGKR    +  G   LIDESYNANP SM+AAI+VL
Sbjct: 293 AAAEAVGIERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQ      GR++A+LGDM E+GE    FH +LA++ S+  I  ++L G  +  LK  LP 
Sbjct: 353 SQ--SEASGRKVAILGDMGELGENEMLFHSNLAKIQSIKAIDILYLVGPMMRCLKKELPS 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + E++D L   I++ ++  D ++VK SN     +++  L +
Sbjct: 411 QKQCLWFESVDALIKEIENLVIINDTIMVKGSNYTKVSKIVEKLKD 456


>gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
 gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
          Length = 478

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/467 (43%), Positives = 267/467 (57%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   +  A++    G +P   + GISIDSR+I P + +FAIKG  +DGH F+  A++
Sbjct: 4   PLWTLDVMAAAMRAERRGALPAA-ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAALK 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L V+         +   P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+T
Sbjct: 63  AGAALAVIEAAQRDKFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTST 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +  KT+A + S+NNH GVPLTLAR P D  F IFE+GM+H GEI  L  +V
Sbjct: 122 KEALRSVLGAQGKTHASVASFNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLVKMV 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPHIA+ITT+ P HL  FSGIE IA AKAEIFEG+E  G + LN D++ F  L+ ++  L
Sbjct: 182 RPHIAIITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGAVVLNRDNAQFARLQRRAKKL 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  I SFG  + AD +L         S +  ++ G  +       G HMA N L  L  
Sbjct: 242 GIAKIVSFGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAVLAA 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+  AD+  A  ALS   P  GRG R+   +  G  TLIDESYNANPASM AA++VL Q
Sbjct: 302 ASLAGADLALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTVLGQ 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                + RRIAVLGDM E+G      H  L E ++   I  V+  G  +  L DAL    
Sbjct: 362 AGVGTQSRRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMRNLWDALSSGK 421

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+E    L   + +++  GDV++VK S       ++  L + FP
Sbjct: 422 RGGYAEGSVALESQVVAAIRAGDVIMVKGSLGSRMKVIVTALEKRFP 468


>gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
 gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
          Length = 460

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 224/470 (47%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELAFD-----IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF +   A     D      K  ++  +   +   G+S +VV    G H   
Sbjct: 233 PYKQ---LSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     +   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHYDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
 gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
          Length = 452

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATQGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVD----GIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  D    + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 236 -KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F     R +            +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFTGTPMRQEIVPFE----DIVILNDAYNANPSSMAEAIKALGQL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IA+LGDM E+G+ ++  H ++ ++L+    S V+  G     +     ++   
Sbjct: 350 --EGKRKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 457

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 207/468 (44%), Gaps = 22/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G   +    V+G++IDSR +     F AIKG   DGHDFI   ++
Sbjct: 4   MSLQEIATACGGTYFGDSTKLSLEVSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +   D    +G +      V     AL  LA   RL     ++ ITGSVGKT+T
Sbjct: 64  NGALCALSEKD----LGDVPYSYILVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + E+G++   E+  L  + 
Sbjct: 120 KEMIASVLEQKYSVLKTEGNFNNEIGLPLTIFNIREEHEVAVLEMGINEFEEMHRLAKVA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I   HL N    + +  AK E+F+ +     I LN DD     L    +  
Sbjct: 180 RPDICVITNIGFCHLENLIDRDGVLRAKTEMFDFMRDGAQIILNGDDD---KLITVQNVK 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           GI  ++ FG ++  D+          + +   + L   ++    H  G HM  N L    
Sbjct: 237 GIIPVF-FGLTERHDYYATDVHSLGLKGTSCILHLPNGTVNANIHLPGAHMVYNALAGAC 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +   K +    P  GR            F +ID+ YNANP SMKA++ VLS
Sbjct: 296 VGYSLGLTNEEIQKGIESLLPVSGRNNLIET----DDFLIIDDCYNANPVSMKASLDVLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDAL 418
               +  GR++A+LGDM E+GE  ++ H  +    +      +   G          +++
Sbjct: 352 ----NALGRKVAILGDMGELGEDEKALHYGVGVYAAKKETDLICCIGTLAQEFVNGANSV 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  Y  T +     + S +  GD ++VK+S+S  F  ++  L +
Sbjct: 408 TSKSETLYFATKEEFLSQMHSIVKKGDTILVKASHSMEFPEIVEALQK 455


>gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
 gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
          Length = 452

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 455

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ QA+     G   +  +  ++ DSR I+    F  IKG   DGHDF+  A++ G
Sbjct: 3   MQLAEIAQALNTSCEGDA-ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             I V  V D L A+  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  ASATLWEAGHPNKPEG--IAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP
Sbjct: 119 MVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   ++IA AK EI + L++ G    N D+       AK      
Sbjct: 179 DVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEPLLAERAAKLSQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG + +        +     S+ ++   G   E     IG H   N +  + +  
Sbjct: 239 ----TFGFADSDSIHASDLRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +     L+ F P      R           ++ + YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGESDEEIAAGLANFVPTA---NRMEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVP 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      
Sbjct: 350 VSEGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQ 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +++H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 410 QNLHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
 gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
          Length = 466

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/463 (38%), Positives = 257/463 (55%), Gaps = 10/463 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT ++   A  G + G      V+G+SID+R+IAP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTANEAAAATGGRAQG---DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+            P+  VDDV   L  L  A+R R+ A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVSRVPEGVPAD--APLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L    R
Sbjct: 117 EMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAKPAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+A  HL  F  +E IA  KA I EGLE  G   LN D +   +L+  +  LG
Sbjct: 177 PHVAMVTTVAAVHLEAFDNVEGIAREKAAIMEGLEPGGVAVLNADIAEAHVLRDVASDLG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +   + FG+S  +D+ L       E++       G+ +E+    +G H A N L  L  V
Sbjct: 237 VSARW-FGESA-SDYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGALACV 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L AD   A  +L+++ P +GRG R    L  G  TL+D+SYNANP SM AA++VL+  
Sbjct: 295 EALGADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVLAAT 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRRIA  GDM E+G      H  LA++ ++  I  +   G  + AL +ALP    
Sbjct: 355 PGQ--GRRIAYAGDMKELGPQEVELHAGLADLDAVKGIDKIHCIGPLMRALHEALPEGKR 412

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +T       + S +  GD+V+ K S S    ++++ + E
Sbjct: 413 GGWYQTSAEAVPGLASEIQGGDIVLAKGSLSMALAKIVDGIRE 455


>gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
 gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
          Length = 452

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL K G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPKNGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TW10509]
          Length = 452

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELKGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
 gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
          Length = 461

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 229/471 (48%), Gaps = 16/471 (3%)

Query: 1   MNPLW--TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  +   T   + Q + G  +        V G+SID+R I     +  I+G  +DGH F+
Sbjct: 1   MVCMMKRTLKQVEQMVMGVGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A++ GA   +   ++      ++IPV  V+D L AL  LA + R +    +I +TGS 
Sbjct: 61  EKAIENGAVATLWKKNVQNP--PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI F
Sbjct: 119 GKTSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEF 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ L RP+ A+IT I  AHL +    + IA AK EI  GL+  G    N D+      + 
Sbjct: 179 LSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN-RV 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            S  L  +TI +FG ++  ++        +  ++ ++  Q +++      +G H   N L
Sbjct: 238 PSMNLAAETI-TFGDARANNYYPTSVTLQATGTYFKMN-QDENIVFYLPVLGKHNVYNTL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++ I        +   + L         G R      +   T+I+++YNA+P +M+AA 
Sbjct: 296 ASMAIAKYFGVTWEEMKQGLVTLQMT---GMRMEIVKTENGLTIINDAYNASPTAMEAAF 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +++ +      ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + + 
Sbjct: 353 HLMNGLDGF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEG 410

Query: 418 LP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +  V   +  + L   +Q  +   DVV+VK+S       +I +L 
Sbjct: 411 AKINFPNERVKVYDNKEELVKNLQEVVDVKDVVLVKASRGMKLEEVITMLK 461


>gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
 gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
          Length = 461

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/476 (30%), Positives = 214/476 (44%), Gaps = 21/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL +  +++Q  +G    I      Q  +  IS DSR I     F A+ G  +D HDF
Sbjct: 1   MIPL-SLGNIVQITKGKLSNIAQNQADQLIIKSISTDSRKIDEDCLFIALAGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    +KG+  V+VN ++      +  P   V D   A+ ++A   R  S A I+A+TGS
Sbjct: 60  IADVKEKGSVAVLVNREI-----DVDCPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L    +T    G+ NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLAPEHRFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +  ++V+P  A++  +  AH+  F  +E IA AK EIF  L++ GT  +N D +   L +
Sbjct: 175 YTVNMVKPDSALVNNLFSAHIEGFGSLEGIAQAKGEIFTHLKEQGTAIINLDSNDLPLWE 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              +A   K  +S    +NADF   +       +   +      +EV     G H   N 
Sbjct: 235 HHLNARQTKWSFSLSAQRNADFYPTEIAVKQFITNFTLHTPEGCVEVTLPLPGRHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +     A ++     LS      GR         +    ++D++YNAN  SM A 
Sbjct: 295 LAASALALSAGATLEDIRLGLSTLKAVPGRLYPVELTTGK---MVLDDTYNANDGSMIAG 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+  +   +   V GDM E+G+ S+  H D+        I  V   G H   + D
Sbjct: 352 LQVLSQLPGY---KIFFVAGDMAELGKDSEKCHRDVGRFAHNAGIDSVLTVGEHSHFISD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
                 H  +      L   +   L   DV  V+VK S S     ++N L E F  
Sbjct: 409 ENQGGQHFAF---KADLLAQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFEC 461


>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
 gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
          Length = 462

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 215/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    + +    S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRTIALLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKELR 457


>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
          Length = 438

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/443 (30%), Positives = 210/443 (47%), Gaps = 15/443 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S 
Sbjct: 9   NQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSG 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+Y
Sbjct: 68  PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNY 127

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    
Sbjct: 128 NNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSR 187

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK+EI  GL+  GT   + D+    LLK     +      S G + +        
Sbjct: 188 EGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVKEVENAKCISIGVATDNALVCSVD 244

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            + +      +             +G H  +N  + + +   L    +T           
Sbjct: 245 DRDTTGISFTIN---NKEHYDLPILGKHNMKNATIAIAVGHELGLTYNTI---YQNLKNV 298

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+ E+GE
Sbjct: 299 SLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDVLELGE 354

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLV 442
            S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   + S L 
Sbjct: 355 NSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLK 414

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
             D ++VK S       ++N L+
Sbjct: 415 AHDRILVKGSRGMKLEEVVNALI 437


>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
 gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 227/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G  +        V G+SID+R I     +  I+G  +DGH F+  A++ G
Sbjct: 5   TLKQVEQMVMGVGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++      ++IPV  V+D L AL  LA + R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWKKNVQNP--PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL+  G    N D+      +  S  L  
Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN-RVPSMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +TI +FG ++  ++        +  ++ ++  Q +++      +G H   N L ++ I  
Sbjct: 242 ETI-TFGDARANNYYPTSVTLQATGTYFKMN-QDENIVFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R      +   T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKQGLVTLQMT---GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q  +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKVYDNKEELVKNLQEVVDVKDVVLVKASRGMKLEEVITMLK 458


>gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 452

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
 gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
          Length = 460

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 224/470 (47%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELAFD-----IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF +   A     D      K  ++  +   +   G+S +VV    G H   
Sbjct: 233 PYKQ---LSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     +   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHYDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
 gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
          Length = 452

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLYPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/460 (30%), Positives = 207/460 (45%), Gaps = 24/460 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L  AI    IG    G V  ++ D+R + P   F A++G  +DGHDF   A++ GA
Sbjct: 5   TLQTLADAIGATLIGA--DGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALEGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++VN  +      L +P   V D   AL +L    R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVNRRLA-----LDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G+ NN IGVPLTL R+    DF + ELG +H+GEI +   L RPH
Sbjct: 118 SAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +E  +   HAL  +
Sbjct: 178 SALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIVNVDSNDWESWQ---HALTEQ 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ F     A  DF     +  +  +   +        V+    G H   N L    + 
Sbjct: 235 RVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAAALT 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +    + L+      GR    R    Q    L+D+SYNAN  SM AA  VL  +
Sbjct: 295 MSVGASLTQVQQGLAGLQAVPGRLFPIRLGEQQ---LLLDDSYNANVGSMSAAAEVLGNM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G  +++ H  + +      I  V   G     + +      H
Sbjct: 352 P----GYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKVLSVGGLSRLIGEVSGCGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLI 461
                  + L   ++  L +     ++VK S S    +++
Sbjct: 408 ---FMDKEALLERLRHLLCEHAAITILVKGSRSAAMEQVV 444


>gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
 gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 222/471 (47%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L     G   G      V+ ++ D+R ++    F A++G  +D HDF+  A
Sbjct: 1   MITL-TLQKLADLTGGKLFGG--DLSVDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +  ++  +      V D   AL +LA   R +S A ++A+TGS GKT
Sbjct: 58  MAAGASALLVSKHVTVAVPQV-----VVADTRIALGQLAGWVRQQSTARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN IGVPLTL R+     + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLNASHQYAVVELGANHQGEIAYTTE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP  A++  +A AHL  F  +  +A AK EIF+GL   GT  LN D + +   +   H
Sbjct: 173 ITRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPINGTAILNADSNDWPHWQ---H 229

Query: 241 ALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +L  KT++ F  +  A  DF     K  S  +   +     S+ +     G H   N L 
Sbjct: 230 SLHSKTVWRFSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLPLPGRHNIANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A +    K LS      GR      A N+    L+D+SYNAN  SM AA  
Sbjct: 290 AAALALSVDAPLSAIQKGLSHLQAVPGRLYPVALAENK---LLLDDSYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS++     G R+ V+GDM E+G+ ++  H ++ E   L  I  V   G     + +A 
Sbjct: 347 VLSEMP----GYRVMVVGDMGELGDEAEECHREVGEAARLAGIDKVLSVGKMSHLISEAS 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
               H+        +   +Q+ L + DV  ++VK S S    +++  L E+
Sbjct: 403 GAGEHLQ---DKAAVTARLQTLLAEHDVITILVKGSRSAAMEQVVQSLQEK 450


>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
 gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
          Length = 478

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/471 (36%), Positives = 259/471 (54%), Gaps = 20/471 (4%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN  LWT  ++  A +G   G      V+GISIDSR +A  + F A+K    DGH+++  
Sbjct: 1   MNKSLWTSKEIAAATKGEMTG---DWKVSGISIDSREVAKGDLFVALKDLR-DGHEYVSS 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++KGA   ++++D         +P   VD+ L AL  L +AAR RSKA   AITGSVGK
Sbjct: 57  AIEKGAAGALISSDCGD------VPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGK 110

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM+     S  K +  + S+NNH GVPLTLARMP D    IFE+GM+  GEI   +
Sbjct: 111 TSVKEMIAQIFRSKGKAHWNVKSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIAPRS 170

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRP IA++T IA AHL     IE +A  K++IF GLE  G   L  +D FF+ +KA+ 
Sbjct: 171 RMVRPQIALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEPNGVAILPREDDFFDYMKARV 230

Query: 240 -HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                  ++ SFG ++  AD +L  ++     S     + G+++    + IG H   N +
Sbjct: 231 FDCQPTASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAV 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + +  +       A   L  + P  GRG      +  G  TL+D+SYNANP SM+A +
Sbjct: 291 LAILVGRLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L Q S    GR+IA+LG+M E+G  +   H DL + +    +S ++L+G  +L L+D+
Sbjct: 351 AALGQRS----GRKIAILGEMRELGPDADKLHADLKDPILKAGVSELFLAGDGLLPLRDS 406

Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + +   V ++ T   L L +  SL+ GDVV++K SN+ G   + N L 
Sbjct: 407 CSNNENEPGVCWASTSKELVLMVNKSLISGDVVLIKGSNASGIASVANALK 457


>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
 gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
          Length = 464

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 203/474 (42%), Gaps = 27/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L TF ++ +A +G  IG        + G  IDSR +     F  IKG   DGH FI 
Sbjct: 6   MKNL-TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIP 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++GA +V+   ++    G    P   V+    A+ KLA   R      ++ ITGSVG
Sbjct: 65  TVFEQGAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L
Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P + VIT I   HL      + +  AK E FE +       LN DD       A 
Sbjct: 181 STMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKL----AT 236

Query: 239 SHALGIKTIYSFGKSKNAD----FQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +  K    +GK   +           +    +             +   H  G H  
Sbjct: 237 VQTVNGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAHIHIPGEHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +    +   L   +      +       GR    +        T+ID+ YNANP SM
Sbjct: 297 YNAMAAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKT----HGMTVIDDCYNANPVSM 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K++I VLS    H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G     
Sbjct: 353 KSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKE 408

Query: 414 LKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                      + +HY E  + +   + S + +GD ++VK+S+   F +++  L
Sbjct: 409 YAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEAL 462


>gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
 gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
          Length = 452

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/464 (30%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELKGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++VN  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVNRPL-----DIDLPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 212/473 (44%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T  D+L A  G  +        +G+S DSR++ P E F  ++G  +DGHD++  A  +
Sbjct: 2   LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPGELFIPLRGERFDGHDYLDAARAR 61

Query: 64  GAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  L +V             +    VDD L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVRLTLVERQWLAGRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+   +     G+ NN IGVP  L R+     + + E+GMS  GEI  L  +V
Sbjct: 122 KEMLAAILARTGEGLKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEFGEIDRLAEIV 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT   PAHL     +E +A AK E+F  LE   +   N DD     L A+  + 
Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDP----LIARCPSP 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  +  D      +    +     ++L    + V  H  G H   N L    
Sbjct: 238 EGVKRVSFGL-RGGDVTAEDVENLGKKGQRFTLRLPNGRVTVTLHAFGSHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +   + L  F P   R          G   LID+SYNANPASM AA++ L 
Sbjct: 297 AARVLGVAPEEIARGLGEFMPYARRFNLEEV----GDVVLIDDSYNANPASMAAALTTLR 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DA 417
           +I     GR +AVLGDM E+G  ++  H  L  + +   +  +++ G     +     + 
Sbjct: 353 EIKGS--GRAVAVLGDMLELGIGAEEAHRQLGRLAATC-VDRLYVLGAMAGTVAAGALEG 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                HV  +     +   ++ +   G++++VK S      R+   + E F A
Sbjct: 410 GLEERHVTIAADHGEIVADLRRTAATGEMILVKGSRGMAMDRVAEGIREAFAA 462


>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
 gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
          Length = 462

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 215/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +    S S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  +GK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRTIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
 gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
          Length = 462

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/456 (39%), Positives = 254/456 (55%), Gaps = 16/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LWT  ++ QA+ G   G        G+SID+RS+   + F  + G   DGHDF+  AV 
Sbjct: 4   ALWTADEIAQAVGGQVAG---DFAATGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVA 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
            GA  V+       +   +  P   V+D   AL  L VAAR R  +    A+TGSVGKT+
Sbjct: 60  NGAAGVL-------AAQPVDAPAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTS 112

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +   L    K +A + SYNNHIGVPLTLARMP D +  +FE+GM+H  EI  L+  
Sbjct: 113 VTRAVEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSF 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           V+PH   ITT+ P H+ NF   E  +A AKAEIF GL   G   LN D+ +F+ LK ++ 
Sbjct: 173 VQPHAVAITTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G  T++SFG+++ A  +L  +    E++ + V L+G+++       G H   N L  L
Sbjct: 233 KVGA-TVWSFGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L    +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  L
Sbjct: 292 LMLEALDVPRETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI VL DM E+GE S  FH +LAE ++  N+  V+L+G H+ +L +ALP 
Sbjct: 352 G--ARKVAGRRIVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSLWEALPP 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    Y+   + L   +  ++  GDVV+VK SN   
Sbjct: 410 TRRGGYAVVTEKLTAELAGAIRPGDVVMVKGSNGSR 445


>gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei Ss046]
 gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii Sb227]
 gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ATCC 8739]
 gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SE11]
 gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sp. D9]
 gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046]
 gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227]
 gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli ATCC 8739]
 gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11]
 gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)]
 gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli BL21(DE3)]
 gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Escherichia coli 042]
 gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli W]
 gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 85-1]
 gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           dysenteriae CDC 74-1112]
 gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           flexneri CDC 796-83]
 gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli EC4100B]
 gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli EPECa14]
 gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E128010]
 gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LT-68]
 gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1180]
 gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1357]
 gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli KO11]
 gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H120]
 gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H489]
 gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TA007]
 gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 117-3]
 gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1167]
 gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 5216-82]
 gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 3594-74]
 gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Escherichia coli UMNK88]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
 gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LF82]
 gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
 gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
          Length = 460

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 224/470 (47%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELAFD-----IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTSADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF +   A     D      K  ++  +   +   G+S +VV    G H   
Sbjct: 233 PYKQ---LSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     +   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHYDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 454

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 210/462 (45%), Gaps = 15/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + I            + G++IDSR I   + F   KG + DGH +   A+  GA
Sbjct: 5   TLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D   +  +   PV  V++ L AL +LA A       T+IA+TGS GKTTTK+M
Sbjct: 65  GATFFQRDSTLTAPTNG-PVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS   +     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+++ +P 
Sbjct: 124 LENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     L   
Sbjct: 184 FAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G S   D Q +      E     V      +      +G H  +N  + + +  I
Sbjct: 241 HQVSVGLSAKNDMQCQMVSHLEEGITFTVN---DDVTYTIPILGEHNMRNATIAIAVGRI 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +   + L+     +    R +  +      +I+++YNA+P SMKAAI  LS    
Sbjct: 298 MGLTDEQIQQQLTSLKLTD---MRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLS---- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
           H +G  I VLGD+ E+GE S+  H  +   L    I  ++  G   +A+ +     +   
Sbjct: 351 HMKGETILVLGDVLELGEQSRQLHESVGAYLENKGIHQLYTFGEGAMAIHEKGKAYVNEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  D L  ++ S +    VV+VK+S       ++  L+E
Sbjct: 411 IHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEALVE 452


>gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
 gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    +   NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 AVGATLDAIKAGLANLKAVPGRLFPIQLVENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia fergusonii ECD227]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 217/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELKGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G     +      S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHVIS---TTSGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITHLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A  G S       F++ +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATAGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    V++ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVE----GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + + + +     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 236 -KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F     R +            +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFTGTPMRQEIVPFE----DIVILNDAYNANPSSMAEAIKALGQL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IA+LGDM E+G+ S+  H ++ ++L+    S V+  G     +     ++   
Sbjct: 350 --EGKRKIAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 466

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 231/459 (50%), Gaps = 16/459 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL++ + G  +   P    NG+SIDSR+I   E +FA++G  YDGHDFI  A+ KGA 
Sbjct: 6   LKDLMRVVGGKFVKGNPGFSANGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAINKGAA 65

Query: 67  LVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTK 123
            VV + D +  + S    + +   +D L +L + A + R + K   I  ITGS GKTTTK
Sbjct: 66  AVVCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L    +   +T +  G++NN IG+PL++  +  D+++ +FE+G S  GEI+ L+ ++ 
Sbjct: 126 EILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLRGEIKILSDILN 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   +IT +  +HL  F   + +   K  +F+ +++TG I +N DD F       +    
Sbjct: 186 PDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEFLMT----APQYV 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I +F     AD   +  K  S +   E+  +G S+++     G     N L  +   
Sbjct: 242 SRKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALAAVACA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +D     +  F P +    R    +      LI+++YNANP+SMK AI  + Q 
Sbjct: 302 IGFGFSLDEIKCGIENFMPPK---MRMETLVTGTDVVLINDAYNANPSSMKKAIQAVLQ- 357

Query: 364 SPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                G++I  VLGDM E+G+ S  +H +L + ++ +++S V L G      K+AL  + 
Sbjct: 358 --SYSGKKINLVLGDMLELGDKSADYHSELGKFINAHDVSSVHLLGEMSFYTKEAL-NTK 414

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRL 460
           +V +S   D L   ++    + D V + K+S      ++
Sbjct: 415 NVFHSRNSDSLLTQLKQIPAEDDCVFLFKASRGMKLEKI 453


>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
 gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
          Length = 452

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 207/462 (44%), Gaps = 20/462 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++  AI         +G V+ +S D+R++ P   F A++G  +DGHD+I  A++ G
Sbjct: 1   MTLKEIAAAIGA---DGTFEGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGG 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   V +       G    PV  V +   AL  LA A R R     + ITGSVGKTTTK+
Sbjct: 58  AACAVAHERRDYGAG----PVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKD 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+  +T    G+ NN IG+P TL  +    +  + E+GM   GEI  L  + RP
Sbjct: 114 MIAAAVSAGFQTLKTEGNLNNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADVARP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+      E I  AK E+ + L     +FL  DD   + +     ++  
Sbjct: 174 TLGVITNIGVSHIEQLGSRENIMKAKLELADALPDGAPLFLCGDDDLLKKV-----SIPR 228

Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             +  +G ++          ++   Q+   +Q  G  +      IG H  +N +   G+ 
Sbjct: 229 LDVRFYGVENPACALHAADIREADAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVG 288

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    AL+ +      G R R     G  T++++ YNA+P SM+AA++ LS +
Sbjct: 289 MALGIPAEKCAAALAAYV---PSGMRQRVVHW-GSVTVVEDCYNASPDSMRAALTTLSAM 344

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                GRRIAVLG M E+G  SQ+ H ++    +   +  +   G              +
Sbjct: 345 R--CAGRRIAVLGGMLELGAYSQAAHREVGRAAAGAGVDLLLAYGGDACYYSQGAKEGGV 402

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     L   ++ +L  GD+V VK S       ++  L
Sbjct: 403 ESETFSDKADLLARLRGALGPGDIVWVKGSRGMRMEEVLQGL 444


>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 462

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 214/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    + +    S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R I +LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRTITLLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKELR 457


>gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/464 (37%), Positives = 254/464 (54%), Gaps = 12/464 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A +G S          G+SID+R++ P + F A+K    DGHDF+  A++K
Sbjct: 3   LWTATEAAGATKGRS---TTDWQATGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+            P+  VDDV   L  L  AAR R+ A ++ +TGSVGKT+TK
Sbjct: 59  GAGAALVSRIPEGVPED--APLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +  KT+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L H  R
Sbjct: 117 EMLASILETRGKTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAHQAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+ ++TT+A  HL  F  +  IA+ KA +F+GL   GT  +N D     +L++++ A G
Sbjct: 177 PHVGLVTTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQARG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I  FG+    D+ L   +Q ++    + ++    +       G H A N L  L   
Sbjct: 237 AK-IVEFGRMAR-DYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAAC 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAISVLSQ 362
             L  D+D AI  L  + P +GRG R   AL  G    L+D+SYNANP SM+AA+ VL+ 
Sbjct: 295 VELGVDLDQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAA 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +     RRIA LGDM E+G   Q+ H  +A+V ++  +  V   G  + AL  ALP   
Sbjct: 355 SAGQ---RRIAFLGDMKELGAQEQAMHAAIADVAAMAQVDQVHCIGPLMRALHQALPEGK 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              ++ET  G+ L +   + DGD V+ K S S    ++++ L +
Sbjct: 412 RGLWAETSAGMALHLPELIRDGDAVLAKGSLSMALAQIVDGLRK 455


>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 204/461 (44%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR+I     F   KG + DGH FI  A++ GA
Sbjct: 5   TLQQIQNWISCEIDEQYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                      S   +  P+  V+D L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  VASFSEKGTELS-EDVEGPIIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LL      +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLTPHVKQIQQA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G               +E     +         V   +G H  +N  + + +   
Sbjct: 241 KLISVGLGDANSLVCHVDDVETEGIGFTIN---NDESYVLPILGIHNMKNAAIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     T  + +        R +R++        T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLPYATIKENIRHVQLTGMRMERHQT---DDNVTVINDAYNASPTSMKAAIDTLSSM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
             EGR+I +L D+ E+G  SQ  H ++   L   +I  ++  G     + +     +   
Sbjct: 353 --EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFTYGTEAEYIFNTGQSYVETA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +    L   +++ + + D ++VK S       ++  L+
Sbjct: 411 KHFDDKSELIKELKAIVKENDKILVKGSRGMKLEEVVEALI 451


>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
 gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 221/471 (46%), Gaps = 18/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++++   G  +G      + G+S DSR+I   E F  + GP++DGHDFI  A
Sbjct: 1   MKAL-TIKEVIKYTSGEYLGNQFNIQITGVSTDSRTINKGELFVPLTGPNFDGHDFIERA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +KGA  ++ + +  + + +L I  +  VD+   AL  L+   R       +AITGSVGK
Sbjct: 60  FEKGAAAILCDKNKRSKVDNLPIKNIIFVDNPQSALLSLSAYYRRLFDIPFVAITGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM    L+   K     G+ NN IG+PLT+ R+      G+ ELGMS LGEI  + 
Sbjct: 120 TTTKEMTAEILNMRFKVLKTSGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRP IAVIT I  AH+      + IA AK EI E L +     LN D    + L    
Sbjct: 180 SVVRPKIAVITNIGIAHIEKLGSKQNIARAKMEILEPLGENDLAVLNGD---CQELWDAR 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +  KT++ FG+ +  D + R  K  S  +   ++      M       G H   N L 
Sbjct: 237 KTIVPKTVF-FGQ-ERGDIKARNIKSNSTNELEFDIYGCYGEMTFKALLPGIHNVNNALA 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   +    +   +        E    R +   +     +ID++YNANP SMK+A+ 
Sbjct: 295 AIAVGFEMGLTKEEIQQGFLNLKLPE---MRLQFKKSYFGADIIDDAYNANPDSMKSALD 351

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L Q S     +R  +LGDM E+G+LS+  H ++ +  +          G +  + K   
Sbjct: 352 FLQQYS--YGKKRAVILGDMLELGDLSEKAHFEIGKYAAER-ADIFIAVGNYAQSFKKGA 408

Query: 419 PRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +      ++H   T+      I+  + D D++++K+S      ++   L+
Sbjct: 409 LQGHLDSRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRGMKMEQITQTLV 459


>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
          Length = 458

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 203/472 (43%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++     G   G     +  V  I+ DSR  AP   F  I G   DGH FI 
Sbjct: 1   MKNL-TLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPGCLFVPIVGERVDGHSFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           + ++ GA   +   +    +     P   V   L A+  +A     + K  ++ ITGSVG
Sbjct: 60  NVMEAGALATLSQKE----LPEARFPYIQVASSLQAVKDIAKFYLEQLKIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L          G++NN +G+PLT+ R+    +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYHILKTQGNFNNELGLPLTVFRLRDYHEIAVLEMGISDFGEMSRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP   VIT I   HL      + +  AK E+F  L++ G   LN DD     L   
Sbjct: 176 ADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKEGGRAILNGDDD---KLATI 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               G + I+ FG +        + +    +     + L      V     G HM  N L
Sbjct: 233 RQVQGKEPIF-FGMNPAFPVYADQIQSRGLKGMSCRIHLPEAEFAVEIPMPGQHMVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  +     +   + +    P  GR +          F ++D+ YNANP SMKA++
Sbjct: 292 AAAAVGMVHGLTPEQIRRGIESLEPISGRFRMIETDH----FLIVDDCYNANPVSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL        GR++A+LGDM E+GE  +  H ++ +      +  +  +G     + +A
Sbjct: 348 DVLKDA----LGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLLICTGSLSRYMSEA 403

Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 ++ V Y      L   + S L DGD ++VK+S+   + RL+  L +
Sbjct: 404 AKAANPNLEVIYEVDSKKLERNLFSYLRDGDTILVKASHFMHYERLVQRLEQ 455


>gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/460 (30%), Positives = 208/460 (45%), Gaps = 24/460 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L  AI    IG      V  ++ D+R + P   F A++G ++DGHDF   A + GA
Sbjct: 5   TLQTLADAIGATLIGA--DSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQAREGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++VN  +      L +P   V D   AL +L    R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVNRRLA-----LDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G+ NN IGVPLTL R+    DF + ELG +H+GEI +   L RPH
Sbjct: 118 SAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +E  +   HAL  +
Sbjct: 178 SALVNNLAAAHLEGFGSLSGVAQAKGEIFAGLPPQGTAIVNADSNDWENWQ---HALTEQ 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ F     A  DF     +  +  +   +       +V+    G H   N L    + 
Sbjct: 235 RVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPAGQCDVLLPLPGRHNIANALAAAALT 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +    + L+      GR    R   +Q    L+D+SYNAN  SM AA  VL  +
Sbjct: 295 MSVGATLTQVQQGLAGLQAVPGRLFPIRLGEHQ---LLLDDSYNANVGSMSAAAEVLGHM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G  +++ H  + +      I  V   G     + +A     H
Sbjct: 352 P----GYRVMVVGDMAELGAEAEACHRRVGQAARAAGIDKVLSVGGLSRLIGEASGCGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLI 461
                    L   ++  L +     ++VK S S    +++
Sbjct: 408 ---FMDKTALIERLKHLLCEHAAITILVKGSRSAAMEQVV 444


>gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS155]
 gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella baltica OS155]
          Length = 460

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 225/470 (47%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGMFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++        IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELAFD-----IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                   SF +   A     D      K  ++  +   +   G+S +VV    G H   
Sbjct: 233 PYKQ---LSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L  ++    + LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPSQL----GRVRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     +   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHYDSVATLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli CFT073]
 gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli CFT073]
 gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ABU 83972]
 gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 153-1]
          Length = 452

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGCHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens 200]
          Length = 460

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 227/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +  H +G      +  +S DSR +     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLEVLSQHLGAHRVGN--DVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++      L+IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVERELA-----LNIPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F +++  K+ 
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADVMSVKAR 232

Query: 241 ALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQ 294
                    F + + A     D      K  ++  +   ++  G+S +V     G H   
Sbjct: 233 PYKQLH---FSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPLAGRHQVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   +      LS   P +GR +  +     G   LID+SYNANP S+ 
Sbjct: 290 NALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQL----GRIRLIDDSYNANPVSVG 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI+ L +IS +    R  VLGD+ E+G+ +   H +L ++     I  ++ +G      
Sbjct: 346 AAIAWLKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHT 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H   +  ++ L   I + L     V+VK S S    R+++ L
Sbjct: 402 SQAFGAEHHESVAVLVEKLIKHI-NQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
 gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
          Length = 460

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/476 (29%), Positives = 206/476 (43%), Gaps = 22/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L +   + Q  QG    I      Q  +  IS DSR I     F A+ G  +D HDF
Sbjct: 1   MIAL-SLETIAQVTQGTLSTITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    QKGA  V+VN  +      +  P   V D   A+  +A   R  S A I+A+TGS
Sbjct: 60  IADVKQKGAVAVLVNRKI-----DVECPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L    +T    G+ NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLTPEHRFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   +V+P  A++  +  AH+  F  ++ IA AK EIF GL++ GT  +N   +   L +
Sbjct: 175 YTVDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              ++   +  +S      ADF           +   +      + +     G H   N 
Sbjct: 235 QHFNSRQTQWSFSLSADTQADFYPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +    + L+V     GR         +    ++D++YNAN  SM A 
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGK---IVLDDTYNANDGSMMAG 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+     G +I V GDM E+GE S+  H D+        I  V   G +   +  
Sbjct: 352 LQVLSQLP----GYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
                 H  +      L   +   L   DV  V+VK S S     ++N L E F  
Sbjct: 408 ENEGGEHFSF---KADLLTQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFEC 460


>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
 gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 228/464 (49%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G  +        V G+SID+R I     +  I+G  +DGH F+  A++ G
Sbjct: 5   TLKQVEQMVMGAGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++      ++IPV  V+D L AL  LA + R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWKKNVQNP--PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL+  G    N D+      +  S  L  
Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN-RVPSMNLAA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +TI +FG ++  ++        +  ++ ++  Q +++      +G H   N L ++ I  
Sbjct: 242 ETI-TFGDARANNYYPTSVTLQATGTYFKMN-QDENVVFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R      +   T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKQGLVTLQMT---GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GF--SKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKVYDNKEELVKNLQAIVDVKDVVLVKASRGMKLEEVITMLK 458


>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 458

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 202/455 (44%), Gaps = 23/455 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + +   G  +G         +S D+R++ P   F A+ G   DGH+F+  AV KGA  VV
Sbjct: 9   IARVTGGVLLG--EDREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAAGVV 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V         S+++    V D   AL +LA+  R +    +I ITGS GKTTTK+++   
Sbjct: 67  VERPF-----SINVTQIVVKDTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLVKAV 121

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L       A   ++NN +GVPLTL     + + GI E+GM  LGEI  L  + RP I +I
Sbjct: 122 LRQKYNVCATEKNFNNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGII 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I  AHL      E IA AK+E+ + L   G   +N +  + + + A          Y 
Sbjct: 182 TNIGEAHLELLKSQENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKK----YF 237

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG  +  D  ++K+ Q  +     +       E      G H A N L  +     L   
Sbjct: 238 FG-HRAGDLYIKKFSQEDDGLRF-ITAGILEEEFFLPLFGVHNAVNALAAILTALTLGVR 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           V    K        E  G R       G   +I + YNA+P SM+AA+ VL+      +G
Sbjct: 296 VPLIKKG---LSEVELTGMRLEIQF-IGSMKIIKDYYNASPTSMEAALKVLAGT--GQKG 349

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVH 425
           R+IAVLG+M E+G+   + H  + EV S   +  +   G     + +          ++ 
Sbjct: 350 RKIAVLGEMYELGDFETTGHRRVGEVASKLGVDFLITVGPKAREIGNGALAGGMSPQNIF 409

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +  T +    F+ + L   D V++K+S    F  L
Sbjct: 410 HFATKEEAGSFLLNFLKPEDTVLLKASRGMKFEEL 444


>gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Clostridium botulinum H04402 065]
          Length = 462

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 214/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +      S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  ++   +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMSEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A K+       
Sbjct: 357 K---GKRTIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYKEGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y           +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNQEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 456

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 223/468 (47%), Gaps = 18/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T   +   + G  +       +NG+S DSR++   + F  +KGP+YDGHD++  A
Sbjct: 1   MN--LTSDQVATIVGGRRLAAATDPEINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA   +        +G L +PV  V+D L AL +LA   R      ++A+TG+ GKT
Sbjct: 59  VEHGAAACLSEE----VVGGLPVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTTGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+         G++NN IG+PLTLAR+  +  + + ELGMS  GEI  LT 
Sbjct: 115 STKEMLASILAQGSDGLKTEGNFNNLIGLPLTLARLSDEHRWMVLELGMSQHGEIERLTE 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A+IT +   HL+    IE +A AK E+F GL+   T  +N DD+    L     
Sbjct: 175 IAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSGLKAGATAVVNRDDALIAALP---- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +  F  +     +        +Q+   + +    + V     G H   N L   
Sbjct: 231 IPDGVRVIDFSLTYQTQVRATSID-SGQQASFTLHVGESQVRVELPLPGRHQVYNALAAA 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   ++     L       G   R          T++D+SYNANP SM+AA+SVL
Sbjct: 290 AAAHAVGCSLEQIATGLGCVKMAAG---RLEVRTLPHGATVLDDSYNANPQSMQAALSVL 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALP 419
           S      +G +IAVLGDM E+G++SQ+ H +L  + +      V   G    A LK  + 
Sbjct: 347 SDWP--CQGTKIAVLGDMLELGDVSQACHEELGRLAAQR-AEQVLCYGDWAAAVLKGVVE 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +        + D +  +++  + + D ++VK S      ++++ LL +
Sbjct: 404 QGGQGAICTSHDEILDWLERQVREDDCILVKGSRGMRMEKVVHALLAQ 451


>gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UTI89]
 gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli APEC O1]
 gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
 gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli UTI89]
 gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli APEC O1]
 gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IHE3034]
 gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UM146]
 gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 110-3]
 gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 16-3]
 gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H252]
 gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H263]
 gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
          Length = 452

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 453

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 210/465 (45%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +  +S D+R +     F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIG--ESIDIEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   V D    L +L    R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHLP-----IDVPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F   +     L  K
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIVNADSNDFPHWQV---TLNHK 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F        DF        ++ +   +       +V+    G H   N L    + 
Sbjct: 235 TVWRFSPQAACDIDFFASDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     LS      GR      +  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 295 MSVGATLEAVKAGLSQLQAVPGRLFPIALSEGK---LLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +   H  + E   +  I  V   G     +  A   S +
Sbjct: 352 P----GYRVMVVGDMGELGDDAPECHRQVGEAARVAGIDRVLSVGTLSELIGTA---SGN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
             + +    L   ++  + + +V  V+VK S S    ++++ L E
Sbjct: 405 GEHFQNKAALVSRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449


>gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
          Length = 483

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/468 (30%), Positives = 226/468 (48%), Gaps = 21/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +       + + GH I          +S D+R I   + + A++G  +DG DF   A++ 
Sbjct: 1   MMLLAQAAKVLHGH-IKGPTDARFMAVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIES 59

Query: 64  GAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA  V++N D   +   +  P   +  V D   AL +LA   R +    ++AITGS GKT
Sbjct: 60  GATAVLMNADSFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKT 119

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L S         A  G++NN IG+PLTL ++     + + E+GM+H GEI 
Sbjct: 120 TVKEMLASVLRSAAGSDDAVLATKGNFNNDIGMPLTLLQLNAQHRYAVIEMGMNHPGEID 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +LT +  P++A+I   + AHL     +E +A AK EIF GL+  G+  +N DD F  L +
Sbjct: 180 YLTRIACPNVALINNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGSAIINADDEFAPLWR 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +   G  ++  FG S ++D  +  W+       ++V+       V     G H A+N 
Sbjct: 240 CLA---GANSLLEFGLSGHSDV-VGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L        L   +++ +  LS F    GR +R      +    LID++YNANPAS+KAA
Sbjct: 296 LAVTAAAIALNLSLESIVAGLSKFSGVAGRLQR---KPAREGAVLIDDTYNANPASLKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I+VL+ +S    G+R+ VLGDM E+GE + +FH  +   +    I +++  G        
Sbjct: 353 IAVLAAMS----GQRVLVLGDMGELGEDTAAFHAGIGINVRESGIENLYALGELSREAVR 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +   + E +D L   +   L  G  V+VK S      R++  L
Sbjct: 409 EF--GVGALHFEHIDALLAELDKELKVGTTVLVKGSRFMKMERVVKHL 454


>gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           boydii ATCC 9905]
          Length = 452

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G     +  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHTISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 536]
 gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia
           coli 536]
 gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 60-1]
          Length = 452

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H  + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHAQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
 gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
          Length = 490

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/469 (30%), Positives = 235/469 (50%), Gaps = 21/469 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-KG 64
           T  D+++A  G  +       +   SIDSRS +    F  I G   D H FI  A++  G
Sbjct: 28  TIKDIVEACSGQLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKING 87

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A     +       G  + P   V D + A+ K+    R R    ++A+TGSVGKTTT+E
Sbjct: 88  A--TFTSEHDEPLEGFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTRE 145

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L+S KK +  IG+ N+ IGVPLTL+ +  + +  + E+GMS  G+I  LT+++RP
Sbjct: 146 MISTVLASQKKVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERGQIEKLTNMIRP 205

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++AV+T I  +H++     E I   K +I +GL + G +FLN DD F    + K      
Sbjct: 206 NVAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLAPYRGKLS---- 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMAQNMLMTL 300
              + +G  K  D++         Q+      +     K MEVV   +G H  +N L+ L
Sbjct: 262 HKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDMEVVLGTMGEHNVRNALVAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   +  D+  A KAL  FH +  +    +        TLID++YNA+P SMKA++SVL
Sbjct: 322 GVAHQMGLDMKAAAKALVTFHGQRQQMHTLKS------CTLIDDTYNASPDSMKASVSVL 375

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +    +GRRIA L DM E+GE  + +H ++ + ++   +  V   G     +   +  
Sbjct: 376 SSM-EGVKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEVAAYGELSEEILKGVED 434

Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     V + E+ D L  ++ + +   DV+++K+SN      +    L+
Sbjct: 435 NNERIVVKHFESRDALKDYLLTYVHPDDVLLLKASNGMKLKEIAEAFLQ 483


>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 461

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 211/444 (47%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN     SI  + I
Sbjct: 33  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----SIDGVHI 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V   L AL K+A A R      IIA+TGS GKTT KEM+   L     ++A  G+ 
Sbjct: 89  PQFVVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I
Sbjct: 147 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A +K EI +GL  TG   +N DD++          +  K I  F     AD   +  
Sbjct: 207 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFW---DDLIADKKILRFSSLHPADIYAQDI 263

Query: 264 KQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  +   +   + L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 264 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 323

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      Q   T+ID++YNAN  S+  A+ VLS       GR+I V GDM E+G
Sbjct: 324 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSGRP----GRKIFVFGDMGELG 376

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A       H+  + + L   +++ L 
Sbjct: 377 EWTTQHHREVGVAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 434

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 435 PDTTVLVKGSRSSAMENVVHRLVQ 458


>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
 gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
          Length = 455

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + +Q  +     +  V GI  D+R I   + F    G   DGH+F+  A + GA
Sbjct: 4   TLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  D+         P+  VDD L AL + A          +IA+TGS GKTTTK++
Sbjct: 64  SAAFWQKDVPNPPADF--PLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L    + +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P 
Sbjct: 122 LSGMLRETFRVHRTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSQIAQPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+      EEIA+AK EI  GL+  G      D+     L  +  AL  +
Sbjct: 182 IAIITNIGEAHIEYLGSREEIANAKFEIVTGLKADGLFIYPGDEP----LLTEHTALPAR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++ +FG++  A       K   E +      Q    E     IG H   N +  +     
Sbjct: 238 SV-TFGRTDQATIFATTIKTSEEGTTFTTN-QTADREFYVPIIGEHNVFNSMAAMLAAFE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  + +T   AL      + R +            +++++YN++P ++K  ++    +  
Sbjct: 296 LGVEPETIQTALRHIDRSKSRLEWLTTPK---GSRILNDAYNSSPTALKTVLNTFLNMPT 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
               ++  VL DM E+G+ S+  H + A  L    ++ V+L G  +    D     I   
Sbjct: 353 A--AKKYLVLADMLELGDFSEQLHQESARTLENGEVAGVFLYGTAMKNFADEAASLIGQE 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            VHY    + L   + ++L   + ++VK S S G   ++  L+
Sbjct: 411 KVHYFTDKEALTDAVSNALTGNEWILVKGSYSMGLKDVVEKLM 453


>gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei 53G]
          Length = 452

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A ++     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLNAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
 gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
          Length = 462

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 215/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +    S S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRTIALLGSMMELGAEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412]
 gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
 gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412]
 gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
          Length = 452

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/464 (30%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + DF + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDFAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   I+S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALIARIKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
 gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
          Length = 458

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 226/464 (48%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G +  G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA + R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDVANPPEN--LPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+      +     L  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLMA 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+ +FG ++  D+        +  +  ++  + +++      +G H   N L ++ I  
Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-KDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L         G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                ++I VLGDM E+G+    FH ++ +++    I+ V+  G     + +       S
Sbjct: 357 GF--AKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFTYGRLGAQIAEGAKINFPS 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEALVKDLQAVVDVKDVVLVKASRGMKLEEVITMLK 458


>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
 gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
          Length = 467

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 213/470 (45%), Gaps = 21/470 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T +++ +A  G  IG    G  + +S DSR +AP E F A++G  +DGHDFI+ AV +
Sbjct: 1   MFTLNEIAEATGGRMIGE-GAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  + +                   V D L AL  LA   R R     + +TGS GKTTT
Sbjct: 60  GITVFLAEESWAERHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+         G+ NN IG+PLT+ R+     + +FE+GMS  GEI  L  + 
Sbjct: 120 KEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT   PAHL     +E +A AK E+F  L+       N DD          +  
Sbjct: 180 EPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSACPTHLNV- 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              T  +FG  + A+      +   ++     ++L     +V     G H   N L    
Sbjct: 239 ---TRLTFGL-RGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L    +   + L  F P + R +    A      TLID+SYNANPASM AA++ L 
Sbjct: 295 AAHALGVSGEVIRQGLEEFSPYDKRFQLEEVA----GVTLIDDSYNANPASMAAALTTLK 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKD 416
           ++     GR +AVLGDM E+G  ++  H +L ++ +   +  + L G  +      AL+ 
Sbjct: 351 ELQGE--GRLVAVLGDMLELGLGTEEAHRELGKLAAGS-VDRLCLLGKLIDETAKGALEA 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            LP +  V      + L   + + +  GD ++ K S      ++   + +
Sbjct: 408 GLPETDLVL-GRDHEQLAQELLTFVQPGDCILFKGSRGMKMDKVAKAVRQ 456


>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
 gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
          Length = 477

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/473 (37%), Positives = 251/473 (53%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G   G        G+SID+R+IAP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAQEAAAATGGQVAG---DWDATGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+       G     +  VDDV   L KL +AAR R +A ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVSH---VPEGVDPARLLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +  K +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ + R
Sbjct: 116 EMLRCVLGAQGKVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLSRMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +APAHL+ F  +E IA  K  IFEGLE  GT  +N D     +L+  + A  
Sbjct: 176 PHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMAQARA 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG++     ++ +   C   +  + +    ++       G H A N +  L + 
Sbjct: 236 A-HVIDFGEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVPGRHFAVNGMGVLAVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             L  D   A+ AL  + P  GRG R    L+    Q    LID++YNANPAS+ A++ V
Sbjct: 295 HALGLDRALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASLGASLEV 354

Query: 360 LSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+   P         GRRIA +GDM E+GE   + H  LA   S+  I  V   G  +  
Sbjct: 355 LAAAEPRDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKIDVVHCVGPLMRE 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L  ALP     H++E    +   ++  L  GDVV+VK S S    R+++ + +
Sbjct: 415 LWTALPYEKRGHWTEDSRAMAARVRHDLDAGDVVLVKGSLSMALSRVVDAIRK 467


>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
 gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
          Length = 477

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/486 (27%), Positives = 211/486 (43%), Gaps = 38/486 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L+A+ G  I +      +  +IDSR + P   F A+ G   DGH F+  A Q 
Sbjct: 1   MLTLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQN 60

Query: 64  GAGLVVVNTDMVASIGSL----------------SIP----VFGVDDVLGALNKLAVAAR 103
           GA L +V  D+     +L                 IP       V++ L AL +LA   R
Sbjct: 61  GAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWR 120

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R    +I ITGSVGK+TTKE++   LS   +T    G+ NN IG+PLTL R+    +  
Sbjct: 121 RRLNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+G    GEI  L  + +P + VIT I   H       E IA  K+E+ + L   G  
Sbjct: 181 VLEMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGGYA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSME 282
            LN+DD +   +  K+ A     I  +G +  A     + +    E     +  + +S  
Sbjct: 241 ILNHDDPWVRWMADKTQA----QILYYGLTPEAHLWADEIETMGLEGIRFRLHYRRESFS 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG+H  Q  L    +  +        I  L     +     R     +     ++
Sbjct: 297 VRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGL----QRSPTQLRLVAVRSSSGALIL 352

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YNA+P S  A++ +L ++    +GRRIAVLGDM E+G   QS H  +    +     
Sbjct: 353 DDTYNASPESTLASLQILHEM----KGRRIAVLGDMLELGPYEQSGHEKVGVRAAEV-AD 407

Query: 403 HVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +   G     +  A   +      + +          ++  L +GDVV++K S+     
Sbjct: 408 VLVAVGELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGDVVLIKGSHGLRMD 467

Query: 459 RLINLL 464
           R+++ L
Sbjct: 468 RIVSAL 473


>gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
 gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
          Length = 452

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L+    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
 gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
          Length = 469

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/478 (29%), Positives = 212/478 (44%), Gaps = 20/478 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             ++T  ++ +A  G  IG   Q  V  +S DSR +AP E F  +KG  +DGHDFI  A 
Sbjct: 1   MAMFTLQEIAEATGGRLIGEA-QAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAA 59

Query: 62  QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +G    ++    +A+ G         V+D L AL  LA   R R    ++A+TGS GKT
Sbjct: 60  GRGVTAFLMAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+         G+ NN IG+PLTL R+     + + E+GMS  GEI  L  
Sbjct: 120 TTKEMLARILAQTGPGLKTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGEIDRLAE 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P + +IT   PAHL     +E +A AK E+F  L++      N DD          +
Sbjct: 180 IADPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDPLVSSCPTHLN 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                T  +FG  + A+      K    E     ++L     +V     G H   N L  
Sbjct: 240 V----TRLTFGL-RGAEVSSASIKSLGKEGESFTLRLPDGEEQVTLKAYGRHNIYNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L          L  F P + R +    A      TLID+SYNANPASM AA++ 
Sbjct: 295 AAAAHALGVPGQVIRLGLEEFTPYDKRFQLEEVA----GVTLIDDSYNANPASMAAALAT 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +++     R  AVLGDM E+G  ++  H +L    +   +  ++L G     ++    
Sbjct: 351 LKEVAG--GARTAAVLGDMLELGLGTEEAHRELGGKAAAT-VERLYLLGGLATEVEKGAL 407

Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF-PAIQ 472
            +      + ++ T + L   + + L  GD V+ K S      ++   + E   P  Q
Sbjct: 408 EAGLSPERIVHAATHEELARELAAWLEPGDCVLFKGSRGMKMEKVATAVKEALAPKTQ 465


>gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
 gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
          Length = 452

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIYVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H  + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHAQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
 gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
          Length = 455

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 219/465 (47%), Gaps = 15/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F ++++AI G           N +S D+R I     F A+KG +++ +D+I+ A +K
Sbjct: 3   LLKFEEIVEAIHGKIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEASKK 62

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L +V+           +  V  V +   AL  LA   R +    +I ITGS GKT+T
Sbjct: 63  GANLCIVDEIKFNENDLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   ALSS  K +   G++NN IG+PL +  +    D  + E+GMS   EI  L  + 
Sbjct: 123 KDLTAAALSSKFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IA+IT I  +H+ N    E I  AK EI +   +   + +N ++   + + +  +  
Sbjct: 183 RPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDISSDDY-- 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + S G ++   ++              V    K+ +      G H   N L+ +  
Sbjct: 241 ---KVISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLAIAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  + D   + +        R    +       FT++D+ YNA+P SMKAAI V++ 
Sbjct: 298 GRVLNIEYDKLKEGIKNLSVTSMRLDIVK----GKKFTIVDDCYNASPDSMKAAIDVMNT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I+     R+IAVLG M E+G  S  FH ++AE  +  NI  +   G    A K+   ++ 
Sbjct: 354 IT---GKRKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGEFNEAYKEGFNKNS 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ET++    F  +++   D+++VK+S S  F  ++N L ++
Sbjct: 411 K--QFETIEDAAEFTTNNINKDDIILVKASRSMKFEYIVNKLKDK 453


>gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 455

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 205/466 (43%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ QA+     G   +  +  ++ DSR I+    F  IKG   DGHDF+  A++ G
Sbjct: 3   MQLAEIAQALNTSCEGDA-ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             I V  V D L A+  LA     +   T++ ITGS GKTTTK+
Sbjct: 61  ASATLWEAGHPNKPEG--IAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP
Sbjct: 119 MVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   ++IA AK EI + L++ G    N D+       AK      
Sbjct: 179 DVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEPLLAERAAKLSQDKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG + +        +     S+ ++   G   E     IG H   N +  + +  
Sbjct: 239 ----TFGFADSDSIHASDLRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                       L+ F P      R           ++ + YN+NP ++KA  +   Q+ 
Sbjct: 293 HFGESDGEIAAGLANFVPTA---NRMEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVP 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      
Sbjct: 350 VSEGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQ 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +++H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 410 QNLHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
          Length = 462

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 218/468 (46%), Gaps = 18/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +++ A+QG  +        N IS D+R I   + F A+KG +++G+++I  A   G
Sbjct: 4   MTFDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNG 63

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +++              +  V+D   AL +LA A R +    +I ITGS GKT+TK
Sbjct: 64  ASMCIIDEIKYREDEIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L  ALSS  K +   G++NN IG+PL + ++    D  + E+GM++L EI  +    +
Sbjct: 124 DLLAAALSSKYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLNEIHRMAEAAK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT +  +H+ N    E I  AK EI +  +K   + +N D+     +K+   +  
Sbjct: 184 PDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDLLSGVKSNKFS-- 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLG 301
              IY+ G     +      +         V+  GK  E   H    G H   N L+ + 
Sbjct: 242 ---IYTTGMENGNNLNACDIELKENFVEFSVEENGKKFEETFHVEIPGKHTISNSLLAIA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              IL  +     + L        R    +       F ++++ YNANP SMKAAI VL 
Sbjct: 299 CGRILGMENKDIKEGLKNLQTTAMRMDLIK----GKKFNILNDCYNANPDSMKAAIDVLK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +      RRIAVLG M E+GE S   H ++ E  +   +  +   G +  A ++    S
Sbjct: 355 NVESS---RRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGEYNKAFEEGFKSS 411

Query: 422 IHVHY--SETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLE 466
               Y   +       ++ +  L +GD V+VK+S S  F +++  L +
Sbjct: 412 TKAEYKAFDDYSEGIKYLVNGYLKEGDTVLVKASRSMKFEKIVEELKK 459


>gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/476 (37%), Positives = 253/476 (53%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G          V G+SID+R++ P + F A+     DGHDF+  A
Sbjct: 1   MSALWTGVEAAAATGGRLTR---DFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+   V      + P+  VDDVL AL  +  AAR R+KA I+A+TGSVGKT
Sbjct: 57  LEKGAAAALVSR--VPEGLPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L++  +T+A   SYNNH GVPLTLARMP D ++G+ ELGMSH GEI  L+ 
Sbjct: 115 STKEMLRTVLAAAGRTHASEASYNNHWGVPLTLARMPADTEYGVLELGMSHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+PH+ VITT+A AH   F  IE IA  KA IFEGL   GT  +N D +   +L A + 
Sbjct: 175 MVQPHVGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAK 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + + +FG++     +L   +  +  +    +       +     G H A N L  +
Sbjct: 235 DKGAR-VITFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGRHFAVNALAVI 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAA 356
                L  D   A+ AL+ + P  GRG R   +L+       F LID++YNANP SM AA
Sbjct: 294 AAADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSMAAA 353

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRR+AVLGDM E+G    + H  LAE  +L     +   G  
Sbjct: 354 LDVLALSEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHALTAADLIVCVGTR 413

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + AL  ALP +   ++  T + +   I      GDVV+VK S       +++ L +
Sbjct: 414 MKALHAALP-AERAYWLATPEEILPHITRIADAGDVVLVKGSKGSRVSIIVDALRK 468


>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
 gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
          Length = 463

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/463 (33%), Positives = 246/463 (53%), Gaps = 6/463 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 1   MWCAKSMGAAVRGLCLGKD-WTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+   V +      P+  V D L AL+ +A      ++A +IAITGS GKTTTK
Sbjct: 60  GAVAAVVDEAYVPTADCG--PLVAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + R
Sbjct: 118 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +  
Sbjct: 178 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY- 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG    AD Q+  +++    + + ++  G+ ++        H+A ++ +T  + 
Sbjct: 237 CARIISFGVGAGADVQI--FRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAAVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              + D+  A  A+  F P EGRGK +          L+D++YNANP SM AAI  LS +
Sbjct: 295 RAFSIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ + 
Sbjct: 355 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHILALYDVLPQHLS 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +          ++  +  GD V+VK S +     ++  LLE
Sbjct: 415 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457


>gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
          Length = 455

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD+I +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYIANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 454

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 210/462 (45%), Gaps = 15/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + I            + G++IDSR I   + F   KG + DGH +   A+  GA
Sbjct: 5   TLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D   +  +   PV  V++ L AL +LA A       T+IA+TGS GKTTTK+M
Sbjct: 65  GATFFQRDSTLTAPTNG-PVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS   +     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+++ +P 
Sbjct: 124 LENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     L   
Sbjct: 184 FAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G S   D Q +      E     V      +      +G H  +N  + + +  I
Sbjct: 241 HQVSVGLSAKNDMQCQMVSHLEEGITFTVN---DDVTYTISILGEHNMRNATIAIAVGRI 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +   + L+     +    R +  +      +I+++YNA+P SMKAAI  LS    
Sbjct: 298 MGLTDEQIQQQLTSLKLTD---MRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLS---- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
           H +G  I VLGD+ E+GE S+  H  +   L    I  ++  G   +A+ +     +   
Sbjct: 351 HMKGETILVLGDVLELGEQSRQLHESVGSYLENKGIHQLYTFGEGAMAIHEKGKAYVNEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  D L  ++ S +    VV+VK+S       ++  L+E
Sbjct: 411 IHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEALVE 452


>gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15]
          Length = 452

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L       GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLVNLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
 gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
          Length = 470

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 21  MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 74

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 75  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 132

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 133 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 193 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL- 251

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 252 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 304 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 361 KNLPT--KGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 418

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 419 KYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 468


>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 455

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 216/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +I       ++ ++ DSR I     F  +KG   DGHDFI  A+  G
Sbjct: 3   MQLAEIAKALD-TTIEGNSDPVISSVAFDSRKINENALFVPLKGER-DGHDFINSAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +          +   PV  VDD L A+ +LA     +    ++ ITGS GKTTTK+
Sbjct: 61  AVATLWEKGHPNKPDNF--PVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV+P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+        K      
Sbjct: 179 DVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKISQAKS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +        ++K     +        +        IG H   N +  + +  
Sbjct: 239 ----TFGFNDQDTIYALEFKSYMHHASFVTSSSEQKFS--IPMIGKHNVSNAMAAICVGH 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D    +LS F P   R +  +  + +    ++D+ YN+NP + KA ++   Q+ 
Sbjct: 293 HFGETDDEIAASLSNFTPTANRMQWRKGDVGED---IMDDIYNSNPTAAKAVLTSFGQVE 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               GRRIAVLGDM E+G  S + H  LAE L    I+ V+L G  +  L++A+     P
Sbjct: 350 VPEGGRRIAVLGDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAP 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            S+H +  + M+ +   +++ +   D+V++K+S+     +++  LL
Sbjct: 410 ASLHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455


>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 468

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 222/474 (46%), Gaps = 16/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T+ ++  A       G V    V  I+ D+R +   + F A++G H+DG  F   
Sbjct: 1   MRNGLTWDEICTATGASVRRGGVAGDTVLPITTDTRKVVAGDLFVALRGEHFDGTAFAAE 60

Query: 60  AVQKGAGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           A+++GA  V+V+         ++ +    V   +D L A   +A A R++    ++AITG
Sbjct: 61  ALERGAAAVLVDQKTPATALTALDTARGGVLVAEDTLRAYQDIAHAWRMKFDIPVVAITG 120

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++    LS   K      +YNN +G+PLTL  +  +    + E+GM  +G+I
Sbjct: 121 SNGKTTTKDLTAAVLSGRGKVCRTAANYNNEVGLPLTLLGITPEDTAAVVEIGMRGMGQI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +  P I ++T +   H+     IE IA AKAE+   +   GT+ LN DD     +
Sbjct: 181 AALAPITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAAM 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +S A     + ++G S  AD +    +  ++ S   V   G+  E      G H   N
Sbjct: 241 --RSSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L    +L          L+    ++ R + ++     G +TLI+++YNA+P+SM+A
Sbjct: 299 ALAALAAGFVLGMTPQEMQVGLTHLTAEKMRYEVHQI----GAWTLINDAYNASPSSMRA 354

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++   + + P   GRRIAVLGDM E+G  ++  H D+    +    + V   G       
Sbjct: 355 SLETTAALYP---GRRIAVLGDMLELGAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTH 411

Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +A   +     +++ +      +++S L+DGD V+ K S      ++I  L  E
Sbjct: 412 EAAEAAGCPACYHAASHADAAAYLRSHLMDGDTVLFKGSRGMRMEQIIAALTGE 465


>gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
 gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli AA86]
 gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
          Length = 452

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 217/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANNDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L       GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLVNLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SSC/2]
          Length = 452

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 221/463 (47%), Gaps = 19/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A  G  +   P   ++ +S +S  I P   F  I G   D H FI +A+++G 
Sbjct: 5   TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGG 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +        +  S + P   V D L A+ ++A   R +    II +TGSVGKTTT+EM
Sbjct: 65  ACLT----QEHTEASGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K +  IG+ N+ +GVPLTL  +  + + G+ E+GMS  G+I  L +++ P+
Sbjct: 121 IAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +  +H+      + I   K +I  GL + G +FLN D+        K      K
Sbjct: 181 VGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMIR----KHIDYVKK 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               +G +++  ++  K ++   Q+  E         +  + +G H   N L  + I   
Sbjct: 237 PYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIGLR 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +      LS F  +       +  ++   + LID++YNA+P SMKA++S+LS+   
Sbjct: 297 YDVPMSAIKAQLSTFSGQR------QNIIHVNDYILIDDAYNASPDSMKASLSILSEFKT 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
              GR+IAVL DM E+G  S  +H ++   ++   ++ ++++G       +   +   S+
Sbjct: 351 R--GRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKENPSL 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H     +   L  F+++ L   DVV++K SN      +   L+
Sbjct: 409 HTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALM 451


>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
 gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
          Length = 461

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 203/466 (43%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL+A+ G  +G        V+G+  DSR I P   F  + G  +DGH +I  A++ 
Sbjct: 5   TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +                  V +   AL  LA   + R +   + ITGSVGKTT K
Sbjct: 65  GAAGCLTARVRTDYREDKF--YIQVGNTERALRDLAAWYKDRFQIPFVGITGSVGKTTAK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS   K     G++NN+IG+PLTL R+      G+ E+GM   GEI +L+ +VR
Sbjct: 123 DMIAAVLSVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEIDYLSDIVR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHAL 242
           P + VIT I  AH+      E I  AK E+   + K  G + LN DD     L+ K+   
Sbjct: 183 PEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKTPVQ 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +      GK+++AD++ +             +       +V    +G HM    L+   
Sbjct: 243 AVFC----GKAEDADYRAQVTGGDGVSHIHCHITTPKMERDVKIPALGEHMIYPTLIAAA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        D     ++ F P      R      +G  T++D+SYNANP SM+AAISVL+
Sbjct: 299 VGEHFGLTPDEIEDGIARFVPTR---MRMNVIQREGEITILDDSYNANPQSMRAAISVLA 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                    ++A+LGDM E+G  + + H  + + L    I  +   G     +      +
Sbjct: 356 DTHSSW---KVAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAVGKLSEHMAQGAREA 412

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V+     +   + +   +     ++VK+S       L   LL
Sbjct: 413 GVPMVYSCADKEAAKVVLPQVVRPDSTILVKASRGMALEELTAQLL 458


>gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
 gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
          Length = 452

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 477

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/475 (34%), Positives = 246/475 (51%), Gaps = 20/475 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G   G       NG+SID+R++ P + F A+K    DGH+F+  A+  
Sbjct: 3   LWTATEAAEATGGRVQG---DWACNGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDS 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTT 121
           GAG  +V    V        P+  V+DV  AL  L  A R R   +A + A+TGSVGKT+
Sbjct: 59  GAGAALVT--HVPEGVGEDAPLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTS 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML        K +A + SYNNH GVPLTLARMP D D+ + E+GM+H GEI  L   
Sbjct: 117 TKEMLLAIFGDQGKAHASVDSYNNHWGVPLTLARMPRDTDYAVIEIGMNHPGEIAPLAKQ 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +PH A++T +A  HL  F  +  IA  KA IF+G+E  G   +N D    +++  K+  
Sbjct: 177 AQPHAAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPGGVAVINADHDHSDIVLDKALE 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++   +FG+  +  + L   K   E +  + ++ G  +       G H A N L  L 
Sbjct: 237 RGLRET-TFGRKGH-HYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAI 357
           +   L AD   A+++L  + P  GRG R +       N     LID+SYNANP SM AA+
Sbjct: 295 VAEALGADRALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMAAAL 354

Query: 358 SVLSQ------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+       I    +GRRIA +GDM E+G  + + H  LA++ +   +  V   G  +
Sbjct: 355 EVLAASEVTHDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVGPLM 414

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A  D LP      ++ET + +   +++ L  GDVV++K S S     +++ + +
Sbjct: 415 KAFYDNLPEHQRGDWTETAEEMLQGLRARLDSGDVVLIKGSLSMKLGSIVDAIRK 469


>gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
 gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
          Length = 462

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/457 (39%), Positives = 258/457 (56%), Gaps = 16/457 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT  ++ +A+ G   G      V+G+SID+R++ P + F  + G   DGHDF+  AV
Sbjct: 3   DALWTADEIAEAVGGQVAG---DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120
             GA  V+          ++  P   V D   AL  L VAAR R  +    A+TGSVGKT
Sbjct: 59  ANGAAGVLAAR-------AVDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +    +   L    K +A + SYNNHIGVPLTLARMP D +  +FE+GM+H GEI  L+ 
Sbjct: 112 SVTRAIEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSG 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            VRPH   ITT+ P H+ NFS  E  +A AKAEI  GL+  G   LN D+ +F+ LK ++
Sbjct: 172 FVRPHAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEA 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +G  T++SFG++  A  +L  ++     + + V L+G+++    H  G H   N L  
Sbjct: 232 EKVGA-TVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCV 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  L    +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  
Sbjct: 291 LLMLEALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKT 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   +    GRR+  L DM E+GE S  FH +LAE ++  N+  V+L+G H+ +L +ALP
Sbjct: 351 LG--ARKVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +    Y+E  + L   +  ++  GDVV+VK SN   
Sbjct: 409 PTRRGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGSK 445


>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
          Length = 457

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 222/465 (47%), Gaps = 13/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F +++ A+ G             IS D+R I     F A+KG +++ +D+I+ A  K
Sbjct: 3   LLKFEEIVNAVGGKVHINSGNHKYTNISTDTRKITKDSIFIALKGDNFNANDYIVDASDK 62

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L +V+         + +  +  V++   AL  LA   R +    II ITGS GKT+T
Sbjct: 63  GANLCIVDEINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   ALSS  K +   G++NN +G+PL +  +    D  + E+GMS+  EI  L  + 
Sbjct: 123 KDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFEEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IA+IT I  +H+ N    E I  AK EI +   K   + +N ++   + +K+  + L
Sbjct: 183 KPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNKENDLLKNVKSNEYKL 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S G  K+ D+               V  + +         G H   N ++ +  
Sbjct: 243 -----MSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGKHNILNSMLAIVA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  + D   + +        R    +    +  FT++D+SYNA+P SMKAAI V++ 
Sbjct: 298 GRSLDIEYDKLKQGIKNLSVTSMRLDIVK----KDGFTIVDDSYNASPDSMKAAIDVITT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I  +   R+IA+LG M E+G+ S  FH ++AE     NI  +   G    A K+    ++
Sbjct: 354 IKGN---RKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVGEFNEAYKEGYNNNL 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +     T++    FI S+L + D+++VK+S S  F  ++N L ++
Sbjct: 411 NFKEFNTIEKAADFITSNLKEKDIILVKASRSMQFEYIVNKLKDK 455


>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
 gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
          Length = 463

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/463 (34%), Positives = 247/463 (53%), Gaps = 6/463 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 1   MWCAKSMGAAVRGLCLGKD-WTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV  D V+   +   P+  V D L AL+ +A      ++A +IAITGS GKTTTK
Sbjct: 60  GAVAAVV--DEVSVPTADCGPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + R
Sbjct: 118 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +  
Sbjct: 178 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY- 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG    AD Q+  +++    + +  +  G+ ++        H+A ++ +T  + 
Sbjct: 237 CARIISFGVGVGADVQI--FRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              + D+  A  A+  F P EGRGK +  A       L+D++YNANP SM AAI  LS +
Sbjct: 295 HAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ + 
Sbjct: 355 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLR 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +          ++  +  GD V+VK S +     ++  LLE
Sbjct: 415 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457


>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
 gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
          Length = 476

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/463 (34%), Positives = 247/463 (53%), Gaps = 6/463 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 14  MWCAKSMGAAVRGLCLGKD-WTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV  D V+   +   P+  V D L AL+ +A      ++A +IAITGS GKTTTK
Sbjct: 73  GAVAAVV--DEVSVPTADCGPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTK 130

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + R
Sbjct: 131 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +  
Sbjct: 191 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY- 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG    AD Q+  +++    + +  +  G+ ++        H+A ++ +T  + 
Sbjct: 250 CARIISFGVGVGADVQI--FRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVG 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              + D+  A  A+  F P EGRGK +  A       L+D++YNANP SM AAI  LS +
Sbjct: 308 HAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNL 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ + 
Sbjct: 368 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLR 427

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +          ++  +  GD V+VK S +     ++  LLE
Sbjct: 428 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 470


>gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 452

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 210/466 (45%), Gaps = 19/466 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +   A+     G        G+S DSR++ P + F A+ G  +DGH FI  A++ 
Sbjct: 1   MMSTQEAALALHADWSGD--NAVFTGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIEN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ D              V D    L +LA + R R    ++A+TGS GKTT K
Sbjct: 59  GAVTAMVSADTAILPTQPDFGWIKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+         ++   A  G+ NN IGVP  L ++       + E+GM+H GEI +L+ 
Sbjct: 119 EMIAAIFRCEFGLENVLATTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P IAVIT    AH+      E IA AK EIFEGLE+ G   +N DD    L +  + 
Sbjct: 179 LAAPTIAVITNAGTAHIEYLGTTEAIARAKGEIFEGLEEQGVAIINADDPHARLWRQLA- 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + +  F  +  A    R+    S   W+ +QL   ++E+     G H   N L   
Sbjct: 238 --GNRPVVDFSMNGTAAVSARQPAHPSGDRWL-LQLPDDTIEITLQVPGRHNVYNALAAA 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +       +  + L  F    G   R +         LID++YNANP SM+AA++VL
Sbjct: 295 AAATAAGISTSSIAEGLHSFRGVPG---RLQKKTGLNRSVLIDDTYNANPDSMQAALNVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G++I ++GDM E+G  + +FH  + +  +   +  +   G           R
Sbjct: 352 AEMP----GKKILIIGDMGELGADTATFHHRIGQQAASAGVDILLALGESSRQAVAGFGR 407

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465
                +   +D L    +S L +  V V+VK S      R+I  L 
Sbjct: 408 G--AQHFADLDTLLEKAKSCLDEQHVFVLVKGSRFMQMERVIEQLQ 451


>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
 gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
          Length = 466

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/471 (30%), Positives = 226/471 (47%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P     D+++A++        +   ++ +  DSR I P   F  +KG   DGH +I  
Sbjct: 1   MKP-TQIKDIVKAVEAIDFTSTARFTEIDSVEFDSRLITPGALFVPLKGA-TDGHSYIDK 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA   + + D   +   +  P+  V+D L A+   A A     K  ++ ITGS GK
Sbjct: 59  AIENGAVAALWSNDP--NEAPVGFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M   ALS+  K +   G+YNN IG+P T+  MP D +  + E+GMS  GEI FL+
Sbjct: 117 TTTKDMTAAALSTALKVHKTNGNYNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P + VIT I   H+      E IA AK EI +GL++ GT     D+    L+  + 
Sbjct: 177 KLAEPDVVVITMIGENHIEFLGSRENIAKAKLEILDGLKEEGTFIYPGDEP---LIVDQM 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                ++  + G + + D           QS     L    +++     G +  QN L  
Sbjct: 234 PTDLKQSTLTIGLNDDHDIFAFDVMMDQFQSTFYTNLS-PELKMEIPLSGGYNVQNALYA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG+       ++     L+ F     RG   R  L      +++++YNA+P++MKA I  
Sbjct: 293 LGVAYSFGLSMEQVRPNLAEFSITPDRGSWERGIL---DTQILNDTYNASPSAMKAVIRN 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
            S I+  G  ++I VLGDM E+G  S   H ++A V+ L    HV+L G  +  L DAL 
Sbjct: 350 FSAIASKGMSQKILVLGDMLELGAFSDELHREIATVIGLNTFKHVFLYGPRIQPLVDALI 409

Query: 419 PRSIH---VHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +H   + Y E   + L   +++ L   D V+VK+SN  G   L+  L 
Sbjct: 410 EKGMHPDLITYIESDKEALIEQVKAILQPEDKVLVKASNGMGLIELVEALR 460


>gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
 gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L+    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFTDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 57-2]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A +Q    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAESQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 454

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 202/470 (42%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L  A  G  +G   +    V  I  DSR       F  IKG   D HDFI 
Sbjct: 1   MKNL-TLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++K     +   D    +G    P   V   L A+  +A     + +  ++ ITGSVG
Sbjct: 60  QVMEKAVLATLSEKD----LGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L+    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP+  VIT I   HL      + I  AK EIF+ L+    I LN DD     L   
Sbjct: 176 AKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDDD---KLVTV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               GIK ++ FG   +      K K    +     +    +S  V+    G H   N L
Sbjct: 233 QETKGIKPVF-FGVENHQGIWADKIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +       ++   K +       GR            +T+ID+ YNANP SMKA++
Sbjct: 292 AATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEAP----NYTVIDDCYNANPISMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR++A+LGDM E+G   +  H ++ +  +   I  +   G     + DA
Sbjct: 348 DVLTDA----LGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMADA 403

Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    V +    + L   +   L  GD V+VK+S+   F  ++  L
Sbjct: 404 AGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453


>gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis HI4320]
 gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus
           mirabilis HI4320]
          Length = 460

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/476 (29%), Positives = 206/476 (43%), Gaps = 22/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L +   +    QG    I      Q  +  IS DSR I     F A+ G  +D HDF
Sbjct: 1   MIAL-SLETIALVTQGTLSTITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    QKGA  V+VN  +      +  P   V D   A+  +A   R  S A I+A+TGS
Sbjct: 60  IADVKQKGAVAVLVNRKI-----DVECPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L    +T    G+ NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLTPEHRFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +  ++V+P  A++  +  AH+  F  ++ IA AK EIF GL++ GT  +N   +   L +
Sbjct: 175 YTVNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              ++   +  +S      ADF           +   +      + +     G H   N 
Sbjct: 235 QHFNSRQTQWSFSLSADSQADFYPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +    + L+V     GR         +    ++D++YNAN  SM A 
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGK---IVLDDTYNANDGSMIAG 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+     G +I V GDM E+GE S+  H D+        I  V   G +   +  
Sbjct: 352 LQVLSQLP----GYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
                 H  +      L   +   L   DV  V+VK S S     ++N L E F  
Sbjct: 408 ENKGGEHFSF---KADLLTQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFEC 460


>gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri VA-6]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 216/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI     L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIARTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S      +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S+  H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEDCHVQVGEAAKAAGIDRVLSMGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 462

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +      S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRAIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter sp. 638]
 gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterobacter sp. 638]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 215/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T       + G   G      V+ ++ D+R I P   F A+KG  +D HDF   A + GA
Sbjct: 5   TLRQAATVLNGELQGQ--DLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKENGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +    ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + ++ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTEEHEYAVIELGANHQGEIAWTVDLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +E +A AK EI+ GL + G   +N D++ +   +   + +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAKAKGEIYGGLPENGIAIMNADNNDWLNWQ---NIIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + F  +  N+DF        S  +   ++     ++V+    G H   N L    +  
Sbjct: 235 KTWRFSPNAANSDFSATNIHVTSHGTEFTLKTPTGDVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A  D     L       GR    + A  +    L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATHDAIKTGLLNLKAVPGRLFPIQLAEKK---LLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G+ S++ HI + +      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVMVVGDMAELGDESEACHIQVGDAAKASGIDCVLSAGKLSQAISQA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +     V+VK S S     +++ L E
Sbjct: 405 EHFADKTALITRLKKLVAEHQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/456 (39%), Positives = 253/456 (55%), Gaps = 15/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G   G   +    G+SID+R+I P + F A+ G   DGH+F+  A +
Sbjct: 4   PLWTAEEIAAATGGKLAGQAFRA--GGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
           KGA  V+ +         +  P   V D L AL KL  AAR R  +A   A+TGSVGKT+
Sbjct: 61  KGAAGVIASR-------QVFGPAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             + +   L+     ++ + SYNNHIGVPLTLARMP      +FE+GM+H  EIR L+ +
Sbjct: 114 VTQAIMAGLTLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIRPLSRM 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           VRPH  VITT+ P H  NF   E  +A AKAEIFEGLE  G   LN D+ +F+LLK ++ 
Sbjct: 174 VRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGEAE 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G  T+ +FG  +  D +L  ++  +  + ++ +L GK+++      G H   N +  L
Sbjct: 234 RAGA-TVRTFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMAVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L  D+D  + AL  F P  GRG   +     G FTLIDESYNANP SM +AI+ L
Sbjct: 293 LMLEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIATL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI  L DM E+G  +++FH  LAE L    I  V+ +G  + +L DALP 
Sbjct: 353 G--ARETAGRRIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFCAGPLMKSLWDALPP 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    Y+E+   L   +  ++  GDVV+VK SN   
Sbjct: 411 TRRGGYAESAAELAPQVVQAVEPGDVVMVKGSNGSK 446


>gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/469 (30%), Positives = 232/469 (49%), Gaps = 23/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN L  F  +++  +G  +G       +  I+ DSR +   + F AIKG H+DG+ F+  
Sbjct: 1   MNILK-FSQIVEWTEGVVLGDSMFSESIYSITTDSRKVKQGDLFIAIKGEHFDGNHFVDM 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA  V+ +    +        V  V D + AL KLA   R      +I+ITGS GK
Sbjct: 60  ALDNGAVAVLSSISHKSPR------VITVPDTVKALGKLASGYRDMLDIPVISITGSSGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+  AL+S    Y   G++NN IG+PLT+     + D  I E+GMS LGEI +L 
Sbjct: 114 TTTKDMIFYALNSQCNAYRTEGNFNNEIGMPLTILNSDEEHDVMILEMGMSSLGEIEYLC 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P+I VIT I  AHL      E+I  AK EI   + +   + +N +D F   L    
Sbjct: 174 SIAKPNIGVITNIGTAHLEQLGSQEKIFEAKMEITSFMHEKDILLVNGEDKFLRNLDKDV 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +   IK   +FG S + D+  + +    + + +   + G  +      +G H   N L  
Sbjct: 234 YQPMIK---TFGFSNSCDYFCKNYDYREDSTDICAMIDGLEVNYTIPSLGKHNILNSLAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG+ S+L  D+  A K+L  F P + R +  +    +   T+I++SYNANP S+K+ +S+
Sbjct: 291 LGVASVLQMDLQKAAKSLIDFQPSKLRMQIEK----KDGITIINDSYNANPDSVKSVLSI 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L++       RRIA+LGDM E+G  S  +H  + E  + ++   +   G     +++   
Sbjct: 347 LAE---KNNVRRIAILGDMLELGRDSDKYHRQIGECAA-HSCDILIGIGMFSDYMREGAL 402

Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    +   T +     I+  +  GDVV++K S      +LI+L+
Sbjct: 403 EHGMDEGFCYSFRTQEESVTTIKDIMRVGDVVLLKGSRGMAMEKLIDLI 451


>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 451

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 212/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + + I         +  + G++IDSR +  +  F   KG + DGH F+  A++ GA
Sbjct: 5   SLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKSGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G          S  S+  P+  VDD L AL +LA A        +I +TGS GKTTTK+M
Sbjct: 65  GASFYEKGQDIS-DSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  +     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEP---LLKPHVENVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G +       +     ++     +             +G H  +N  + + I   
Sbjct: 241 KLVSVGLNHENTLVCKVENSKNDGIAFMIN---NKEHYELPILGIHNMKNATIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +T  K +S       R +R+   +     T+I+++YNA+P SMKAAI  LS    
Sbjct: 298 LGLDYNTIQKNISNVQLTGMRMERH---VTDNQITVINDAYNASPTSMKAAIDTLS---- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
           H  GR+I VL D  E+GE SQ  H D+   L    I  +   G     +     + +  V
Sbjct: 351 HMNGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGNDAKFISRTGGQFVEDV 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y    + L  +++S L   D V++K S       ++N L+
Sbjct: 411 AYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451


>gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae Sd197]
 gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
 gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ +        I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGGAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E482]
          Length = 452

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQITDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
 gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
          Length = 476

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 199/489 (40%), Gaps = 43/489 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   +     G  IG        + G  IDSR +     F  ++G   DGH FI    +
Sbjct: 4   MTLEHIAAVCGGTYIGNEADKTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+    +    G    P   V++ L A+ K+A   R      ++ ITGSVGKT+T
Sbjct: 64  KGALAVLSEEKLENPAG----PYILVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L+         G+ NN IG+PLT+ ++  +    + E+G+S  GE+  L+ + 
Sbjct: 120 KEMIASVLAQKYNVLKTEGNLNNEIGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I   HL N    + I  AK E F  L   G   LN DD            +
Sbjct: 180 NPDICVITNIGLCHLENLITRDGILKAKTESFAHLTPDGIAVLNGDDDKL----CDKKVV 235

Query: 243 GIKTIYSFGKSKNA---------------DFQLRKWKQCS-EQSWMEVQLQGKS------ 280
             K    +G  K A                      +      +   +    K       
Sbjct: 236 NGKPAVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLTGTKAAIHYPSKETGGEVT 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           MEV     G H   N L  + +   L    D   + +       GR        ++   T
Sbjct: 296 MEVTIPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQTIGGRSNLI----HKNGIT 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+ YNANP SMKA+I VLS       GR+IAVLGDM E+G   +  H  + E  +   
Sbjct: 352 IIDDCYNANPVSMKASIDVLSNAP----GRKIAVLGDMGELGAEEKQLHYMVGEHFAGKG 407

Query: 401 ISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           I  ++  G     +  A+     +  VH+ E    L   +   +  GD V+VK+S+  GF
Sbjct: 408 IDALYCVGTLSQEITKAVRANSSATEVHHYEDKADLIKDLVKEVKSGDTVLVKASHFMGF 467

Query: 458 YRLINLLLE 466
             ++  L +
Sbjct: 468 PEIVKELTK 476


>gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           denitrificans OS217]
 gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella denitrificans OS217]
          Length = 457

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 223/475 (46%), Gaps = 29/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +    +G      +  +S DSR+I     F A+KG  +D HDF   A
Sbjct: 1   MIEL-TLDALAQKLNAKHLG--ENLTIANVSTDSRAIPAACLFVALKGERFDAHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++      L IP   V +   A+ ++    R       +A+TGS GKT
Sbjct: 58  IENGAKALLVERELA-----LDIPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEML   LS   +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMLASILSQGHQVLYTAGNFNNEIGVPLTLLRLSQADEYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP +A++  I  AHL  F  IE IA AK+EIF  L   G   +N DD+F EL+K K+ 
Sbjct: 173 LVRPRVALVNNIGSAHLEGFGSIEGIAEAKSEIFNHLSADGVAVINADDAFCELMKTKAK 232

Query: 241 ALGIKTIYSFGKSK--NADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297
           A       SF +    NAD Q       +   +   +  QG+ + V     G H   N L
Sbjct: 233 AFKQ---LSFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAVQLPLAGIHQVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +   +  L+   P +GR + +      G   +ID+SYNANP+S+ AAI
Sbjct: 290 AASAMCLALGISLTDIVSGLARLAPVKGRMQPHTL----GRLLVIDDSYNANPSSVSAAI 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L     + +G    VLGD+ E+G+ +   H  + +      I  ++  G        A
Sbjct: 346 DWLK----NRDGFCCLVLGDLGELGDNAAHLHAQVGQQAKEAQIDALFCCGSLSENTSLA 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEEFP 469
                  HY+E +  L + + S++        V+VK S S    R++  LL  + 
Sbjct: 402 FGSP---HYAE-LPALLVELTSAIKANRGAVTVLVKGSRSARMERVVENLLNAYE 452


>gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia sp. 4_1_40B]
 gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli H736]
 gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
 gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli]
 gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli DH1]
 gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Escherichia coli ETEC H10407]
 gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia coli DH1]
 gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1520]
 gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
          Length = 452

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
 gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
          Length = 454

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 202/470 (42%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L  A  G  +G   +    V  I  DSR       F  IKG   D HDFI 
Sbjct: 1   MKNL-TLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++K     +   D    +G    P   V   L A+  +A     + +  ++ ITGSVG
Sbjct: 60  QVMEKAVLATLSEKD----LGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L+    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP+  VIT I   HL      + I  AK EIF+ L+    I LN DD     L   
Sbjct: 176 AKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDDD---KLVTV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               GIK ++ FG   +      + K    +     +    +S  V+    G H   N L
Sbjct: 233 QETKGIKPVF-FGVENHQGIWADEIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +       ++   K +       GR            +T+ID+ YNANP SMKA++
Sbjct: 292 AATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEAP----NYTVIDDCYNANPISMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR++A+LGDM E+G   +  H ++ +  +   I  +   G     + DA
Sbjct: 348 DVLTDA----LGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMADA 403

Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    V +    + L   +   L  GD V+VK+S+   F  ++  L
Sbjct: 404 AGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453


>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 214/472 (45%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L   +++++A+             +  ++ +S+ I P   F  +K    DGHDFI  
Sbjct: 1   MKAL-AINEIVKAVGAVDYDSTAAHNLITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQD 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA   +   D   +     IPV  V+D   A   LA          +IA+TGS GK
Sbjct: 59  AIDHGAQATLWANDPADAPSE--IPVIQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    LS+    Y   G+YNN +GVP T+  MP D +  + E+GMS  GEIRFL 
Sbjct: 117 TTTKDMTAATLSTTFNVYKTQGNYNNQLGVPFTILSMPEDTEVLVVEMGMSGPGEIRFLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L    +AVIT I  +H+      E IA AK EI EGL++ GT     D+   +  +A  
Sbjct: 177 QLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGLKEDGTFIYPGDEPLVD--QAVV 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               IK I   G   + D          E +     L   ++E+     G +  +N LM 
Sbjct: 235 DMPEIKKI-RVGLDDSEDVYAENIVNEREHTHFYTNLS-PNVELSIPVSGDYNVKNALMA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +       V+     LS F     R +     + +    +++++YNANP++M+A I  
Sbjct: 293 CAVAYSQGLAVEQIKTPLSQFKLTANRSEWL---MGKDDIQILNDTYNANPSAMRAVIRN 349

Query: 360 LSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            SQ+  P     ++ VLGDM E+G+ S S H  +AE +   +I  V+L G  + AL  AL
Sbjct: 350 FSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAEEIDSPHIDGVYLYGKEMQALARAL 409

Query: 419 PRSI----HVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                    +HY  E    L   +   +   D ++VK+S+  G   ++  L 
Sbjct: 410 QEKGYPEDKIHYYPEDKAALIKDLLDQVQSQDQILVKASHGMGLAEVVAALK 461


>gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401]
 gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 4343-70]
 gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-218]
 gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-272]
 gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-227]
          Length = 452

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S      +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 465

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 212/469 (45%), Gaps = 15/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D +  I G  I    +  +  ISIDSR+I   E FFAIKG  +DGHDF++ A++ 
Sbjct: 3   IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRA 62

Query: 64  GAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            A   VV+ + V   +       + GV+D   AL  LA   R      +I ITGS GKTT
Sbjct: 63  EAVGAVVDNEQVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTT 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+++   L +  KT    G+YNN  G+PLTL R+    +  + EL M  LG+I+ L  +
Sbjct: 123 TKDLVASVLETKFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGDIKTLCQI 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I V+T +   HL      E IA AK+E+ E L  TGT  LN DD +   +  ++ A
Sbjct: 183 AQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQMADETKA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                I  +G+    + Q  +     E      V  Q +   +     G +   N L  +
Sbjct: 243 ----EILYYGRESGNNLQASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALAAV 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   L  +++   +        +  G R      +   TLI+++YNANP SM+A + +L
Sbjct: 299 GVGLKLGLNINEIQQG---LAEPDLTGMRGEIKELKDDITLINDAYNANPTSMEAGLDLL 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             I     G  IAVLGDM E+G  ++  H  + + +    I ++   G     +     +
Sbjct: 356 VDIGTDKGG-LIAVLGDMLELGSAAEEAHRQIGKKVINKKIDYLLTVGDLASLIGQEAKK 414

Query: 421 ----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               S  +   +    +   +   +   D +++K S       +   LL
Sbjct: 415 LGMDSSRIFICDDNQEINRQLLQLIKPDDTILLKGSRGMKLEEVEKALL 463


>gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 474

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/476 (38%), Positives = 251/476 (52%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  D + A  G            G+SID+R+IA  + F A+K    DGH+F+  A
Sbjct: 1   MNALWTSQDAIAATGG---ACTVDWVAEGVSIDTRTIAKGDLFVALKDQR-DGHEFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   +V  D +    +   P+  V +VL AL  L  AAR R+ A ++A+TGSVGKT
Sbjct: 57  LAAGASAALV--DHIPDNVAPDAPLLIVPNVLTALEALGTAARARTSAKVVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML + LS+  K +A   SYNNH GVPLTLARMP D DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRVMLSTQGKCHAAEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPLAK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P I +ITT+A  HL+ F  I+ IA  K+ +F GL + G   +N D    ++L   + 
Sbjct: 175 LTQPDIGLITTVAAVHLAAFDNIQGIAVEKSALFSGLTENGVAIVNGDLETSDVLMNAAQ 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               KTI  FG     +F L       +Q+  + Q    +        G H A N L  L
Sbjct: 235 G---KTILRFGSDAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANPASMKAA 356
             VS L AD+  A   L+ + P  GRG++    L++G      TLID++YNANP S+ AA
Sbjct: 292 ASVSALGADMGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVAAA 351

Query: 357 ISVLS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           I +LS       I    +GRRIAVLGDM E+G      H  LAE+  +  I  V   G  
Sbjct: 352 IEILSVSNPIDNIGRIRKGRRIAVLGDMLELGTEEHQLHAGLAELKEIAKIDLVHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +L  A+P S   H+ ET   L   ++S L  GDVV+VK S       +++ +  
Sbjct: 412 MKSLWSAVPNSKRGHWFETSSKLAELMKSQLDAGDVVLVKGSLGAKMAVIVDAIQN 467


>gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 220/463 (47%), Gaps = 19/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A  G  +   P   ++ +S +S  I P   F  I G   D H FI +A+++G 
Sbjct: 5   TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGG 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +        +  S + P   V D L A+ ++A   R +    II +TGSVGKTTT+EM
Sbjct: 65  ACLT----QEHTEASGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K +  IG+ N+ +GVPLTL  +  + + G+ E+GMS  G+I  L +++ P+
Sbjct: 121 IAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +  +H+      + I   K +I  GL + G +FLN D+        K      K
Sbjct: 181 VGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMIR----KHIDYVKK 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               +G + +  ++  K ++   Q+  E         +  + +G H   N L  + I   
Sbjct: 237 PYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIGLR 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +      LS F  +       +  ++   + LID++YNA+P SMKA++S+LS+   
Sbjct: 297 YDVPMSAIKAQLSTFSGQR------QNIIHVNDYILIDDAYNASPDSMKASLSILSEFKT 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
              GR+IAVL DM E+G  S  +H ++   ++   ++ ++++G       +   +   S+
Sbjct: 351 R--GRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKENPSL 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H     +   L  F+++ L   DVV++K SN      +   L+
Sbjct: 409 HTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALM 451


>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
 gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
          Length = 483

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/486 (27%), Positives = 202/486 (41%), Gaps = 40/486 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+ + IDSR       F AI+G   DGH FI   ++
Sbjct: 14  MSLQEIAAACGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVME 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   V   D    +G +      V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 74  QGALCAVSEED----LGDVPYSYIKVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTST 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+S   E+  L  + 
Sbjct: 130 KEMIASVLSQKYSVLKTEGNFNNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVA 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I V+T I  AH+ N    + I  AK E+F  + + GTI LN DD     L+  S   
Sbjct: 190 RPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNENGTIILNGDDD---KLRGYSPEN 246

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           GI  +Y FG  ++  F       +    +  +      S     +  G HM  N L    
Sbjct: 247 GITPVY-FGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATA 305

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L          +    P  GR    R       FT+ID+ YNANP SMKA++ VL+
Sbjct: 306 VGYALGMTDREICAGIEANVPIAGRNNLIRAPH----FTIIDDCYNANPTSMKASLDVLA 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
                 + R+ A+LGDM E+GE  +  H ++        I  +   G  + +  D     
Sbjct: 362 ----FADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVLICIGSLMKSAADGALEY 417

Query: 419 ----PRSIHVH--------------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                 + H                +  T        +  L +GD V+VK+S+   F  +
Sbjct: 418 LEQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKEGDTVLVKASHGMEFPEI 477

Query: 461 INLLLE 466
           +  L +
Sbjct: 478 VEFLQQ 483


>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
 gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
          Length = 456

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 207/469 (44%), Gaps = 22/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G        V G++IDSR I     F AI+G   DGH FI  ++ 
Sbjct: 4   MTLKEIAVACGGIYYGDDENYYKEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIH 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   V        I S S P   V+    AL  +A   R   +  ++ I+GSVGKT+T
Sbjct: 64  DGALCAVSEK----RIESASYPYIMVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + E+G+S  GE+  L  + 
Sbjct: 120 KEMIASVLGQKYNVLKTEGNFNNEIGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + V+T I  AHL      E I  AK E+F  +   G I LN DD    +L + + A 
Sbjct: 180 RPDVCVLTNIGCAHLEQLKSREGILKAKTEMFLYMNPKGDIILNGDDD---MLASVTPAN 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            I+ ++ FG      +     +    + +                  G HM  N L  + 
Sbjct: 237 HIEPVF-FGLDPALAYSAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAAIA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L  +     + +    P  GR           F T+ID+ YNANPASMKA++ VLS
Sbjct: 296 VGRVLGMNDGEIRQGIESLVPLAGRNNLIETE----FLTIIDDCYNANPASMKASLDVLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---L 418
           +     +G  +A+LGDM E+G  +   H +  E  +   I  +   G+    +       
Sbjct: 352 KA----KGHTVAILGDMFELGPKAHEMHCETGEFAAEAGIDELICIGYLSEDIARGAVSA 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + VH+ +T       I + +   D ++VK+S++  F  ++ +L + 
Sbjct: 408 NPEMEVHHFDTKTEFLDHIDTLINKDDTILVKASHAMEFPEIVEILKKR 456


>gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
 gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
          Length = 459

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 219/468 (46%), Gaps = 24/468 (5%)

Query: 10  LLQAIQGHSIGIVP---------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +L+   G  +G++             + G+  D+R I P + F    G   DGH+F+  A
Sbjct: 2   ILKKTVGEVVGMLDSTIHTDAFRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA       ++         PV  V+D L AL ++A       K  +IAITGS GKT
Sbjct: 62  REMGAVATFWQKNVPNPPTDF--PVILVEDTLLALQEMAKKYIQEVKPKVIAITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ 
Sbjct: 120 TTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P IA+IT I  AH+      EEIA AK EI  GL  +G +   Y+++        SH
Sbjct: 180 IAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLSPSGILIYPYEEALL-----LSH 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G     +FGKS+ A+         +E +      +   +E+    IG H   N + T+
Sbjct: 235 IDGDFRQLTFGKSQEAEIYPLAIHAEAEGTAFVTNWE-PDLEIFVPIIGEHNVFNAMATM 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +  + +   KAL      +    R      +    +++++YN++P ++K  +   
Sbjct: 294 LAAREIGIEGEKIQKALRNMERSKS---RLEWLTTKNGTRILNDAYNSSPTALKTVLKTF 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +   G+ R+  VL DM E+GELS+  H + AEVL    +  V+L G  + A ++    
Sbjct: 351 MHMDSQGK-RKYLVLADMLELGELSEQLHKESAEVLEEGAVEKVFLYGEAMKAFEEVAKI 409

Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            I    V + +T + L   + + +   + ++VK S   G   ++  L+
Sbjct: 410 KIGQRKVQHFDTKESLETALLNEMDGNEWILVKGSYGMGLKDVVENLI 457


>gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 3431]
          Length = 452

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKLLIAEQQVITILVKGSRSASMEEVVRALQE 448


>gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners
           AB-1]
 gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
 gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
          Length = 455

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 460

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 220/474 (46%), Gaps = 34/474 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L QA++G  IG      ++ +S D+R+IA Q  F A+KG  +D HDF   A   GA
Sbjct: 5   SLASLAQAVEGQLIG--SDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTT 121
             ++V+  +        +P   V D   AL  L    +     +     +A+TGS GKTT
Sbjct: 63  VALLVSRHLPVE-----LPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM    L++  K  A  G++NN IG PLTL R+  +  + + ELG +HLGEI + T+L
Sbjct: 118 VKEMCAAILATKGKVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHLGEISYTTNL 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P +A+I  +A AHL  F  ++ +A AK EIFEGL K  T  +N   +  EL    +  
Sbjct: 178 VKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASNDRELW---APL 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L  K + +F   + ADF     +  S+     E+     S+ +    +G H   N L   
Sbjct: 235 LADKNVITFSSEEQADFFASDIELDSDGYPHFELHSPQGSVAIHLSQLGLHNVSNALAAA 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + S+L A +    + L      +G   R   +       +ID++YNA+ AS+KAAI +L
Sbjct: 295 ALTSVLGATLAEIKQGLETATNVKG---RVAVSQPMVGLRVIDDTYNASVASVKAAIDLL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +G+R  +LGDM E+GE S++ H ++        +  V   G     + +    
Sbjct: 352 AS----YQGQRWFILGDMAELGEESENLHREVGLYAQTKGLDKVMTFGKASAVVSEL--- 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--------DVVVVKSSNSCGFYRLINLLLE 466
             H  +      L   +   L D           V+VK + S     ++  L E
Sbjct: 405 -NHGQHFADKQPLIAMVNELLNDQINQQNPLEVTVLVKGARSSRMEEVVTALQE 457


>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
 gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
          Length = 450

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAEGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
 gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
          Length = 450

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 211/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+            +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSEC---SELTKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAEGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
 gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
          Length = 456

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 204/464 (43%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   + + +     I I     + G+  D+R+I P   F  I G  ++GHDF+  A+ +G
Sbjct: 5   SVSTMAKWLNDADIINISEDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + +T    +     +P+  V+D + AL +LA        A +IA+TGS GKTTTK+
Sbjct: 65  AKAALWSTKEADAPED--LPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+     ++ K     G++NNHIG+PLT+  +  D +  I E+GMS  GEI  L+ +  P
Sbjct: 123 MMAAVCETLWKVQKTQGNFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL +    E IA AK EI +GL+    +  + D+     L  +S     
Sbjct: 183 DAAIITNIGESHLQDLGSRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQSP---- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG      +  ++       +   V    +        +G H   N +  +    
Sbjct: 239 HPLLTFGHRDTNRYFPQEIVHEPNGTRFNVG-GNEIGSYFITVLGAHNVLNAIAVIATAR 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +          F   +  G R          T+I+++YNA+P S+KAA+ ++  + 
Sbjct: 298 WFGIEDHKINLG---FQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELVQDMK 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            H    +  VLGDM E+GE  + FH D   ++    I+ V+  G     ++    R    
Sbjct: 355 GHQN--KYVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFTYGTLSEHIQKGALRRFEE 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +      L   ++S L   D+V++K S       +   LL
Sbjct: 413 ERAMHFSDKPALISHLKSVLKSDDLVLIKGSRGMKLEEVAEALL 456


>gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 EDL933]
 gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. EC1212]
 gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1125]
 gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1044]
          Length = 452

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIVWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFAEKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 455

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
          Length = 452

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 217/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + ++G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLAEILRGELKGG--DLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+           +P   V D   A  +LA   R +  A I+A+TGS GKT+ KEM
Sbjct: 63  GALLVSR-----ALDTDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS   KT    G+ NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSRCGKTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   +   + +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQ---NIIGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A  +     L       GR    + A NQ    L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATPEAVKAGLKDLQAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKTAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +      L   +++ + +     ++VK S S     ++  L E
Sbjct: 405 EHFADKTALVAHLKALIAEHQIITILVKGSRSAAMEEVVRALQE 448


>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Clostridium botulinum F str. 230613]
          Length = 462

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 214/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +      S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
 gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
          Length = 455

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
 gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
          Length = 450

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 155-74]
          Length = 452

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S      +  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEAVRALQE 448


>gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T]
 gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2002017]
 gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2747-71]
 gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-671]
 gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2930-71]
 gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-304]
          Length = 452

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S      +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
 gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 470

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/466 (40%), Positives = 265/466 (56%), Gaps = 4/466 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PLWT  ++  A+ G   G        G+SIDSRSI P + F A++GP++DGHD +  A
Sbjct: 2   IRPLWTSAEVAAAVAGTPSGAA--WEAQGVSIDSRSIEPGDLFIALEGPNHDGHDHVASA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   +V+     +      P+  V D + AL  L +A+R RS A I+A+TGSVGKT
Sbjct: 60  LANGAAAALVHKLPRGTAED--APLVLVKDTMTALQDLGIASRARSTARIVAVTGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            TKEML +ALS    T+  +GS+NNH GVPL+LARMP  V + IFE+GM+H GEI  L  
Sbjct: 118 GTKEMLALALSDQGATHYSVGSFNNHWGVPLSLARMPTAVQYAIFEIGMNHPGEITPLVR 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITT+   H+  F+   EIA+AKAEIF+G+E  GT  L  D++ F  L   + 
Sbjct: 178 MVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGVETGGTAVLPRDNAHFAYLNDAAR 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG    A  +L       + + +   +  + +       G   A N L  L
Sbjct: 238 TAGLKDIRSFGNHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAVL 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  L ADV+ A  AL+     +GRG+R R  +  G F LIDESYNA+P SMKAAI++L
Sbjct: 298 LAVEALGADVNLAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAML 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + + P   GRRIAVLGDM E+G    S H  +AE +  +NI  V+ +G     L DAL  
Sbjct: 358 ASVRPAKGGRRIAVLGDMLELGPQGPSLHASVAETVESWNIDLVFTAGTLTAHLHDALAA 417

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++   D +   +++ +  GDVV+VK S      R++N L E
Sbjct: 418 PRRGGHAADSDAVAALVKAGVRPGDVVMVKGSAGSRMGRVVNALAE 463


>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/486 (27%), Positives = 202/486 (41%), Gaps = 40/486 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+ + IDSR       F AI+G   DGH FI   ++
Sbjct: 4   MSLQEIAAACGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   V   D    +G +      V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 64  QGALCAVSEED----LGDVPYSYIKVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+S   E+  L  + 
Sbjct: 120 KEMIASVLSQKYSVLKTEGNFNNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I V+T I  AH+ N    + I  AK E+F  + + GTI LN DD     L+  S   
Sbjct: 180 RPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNENGTIILNGDDD---KLRGYSPEN 236

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           GI  +Y FG  ++  F       +    +  +      S     +  G HM  N L    
Sbjct: 237 GITPVY-FGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L          +    P  GR    R       FT+ID+ YNANP SMKA++ VL+
Sbjct: 296 VGYALGMTDREICAGIEANVPIAGRNNLIRAPH----FTIIDDCYNANPTSMKASLDVLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
                 + R+ A+LGDM E+GE  +  H ++        I  +   G  + +  D     
Sbjct: 352 ----FADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVLICIGSLMKSAADGALEY 407

Query: 419 ----PRSIHVH--------------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                 + H                +  T        +  L +GD V+VK+S+   F  +
Sbjct: 408 LEQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKEGDTVLVKASHGMEFPEI 467

Query: 461 INLLLE 466
           +  L +
Sbjct: 468 VEFLQQ 473


>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
 gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 204/464 (43%), Gaps = 16/464 (3%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
               +    P   + G+S D+RSI P + F  + G ++DGH ++  A+Q+GA   +  T 
Sbjct: 2   CGARAYKGEP-VRIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETK 60

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                     P+  V D L AL +LA + R      +I ITGS GKTTTK+M+   L + 
Sbjct: 61  RELPQELADAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLGTA 120

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            K +   G+ NNHIG+PLT+ ++  + D  + E+GMS  GEI  LT++ RP +AVIT I 
Sbjct: 121 YKVHKTAGNLNNHIGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIG 180

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL      E IA AK EI  GL   G +  N D+       A         + +FG  
Sbjct: 181 DAHLLQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQLQTFGLG 240

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           ++ D+     +  +  S   V+ +G+   S        G H   N L  + I        
Sbjct: 241 ESNDWSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGRRFGISE 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L         G R +         +++++YNANP +++AAI ++ Q+S     R
Sbjct: 301 ENIRNGLIGLELT---GMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLSGF--RR 355

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIH 423
           +  VLGDM E+G   +S H +    ++      V   G                  +   
Sbjct: 356 KWIVLGDMRELGPEEESLHFETGAYITPDKADAVITFGPLSEHTSAGALSQFPAEAKGTA 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + + +    L  +++  +   D+V+VK S      +++  L   
Sbjct: 416 IVHFDDKGKLGEWLREQVEPQDLVLVKGSRGVRMEQIVQTLEAR 459


>gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
 gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
          Length = 455

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 455

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 452

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 214/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T       +QG   G      +  ++ D+R +     F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQAAAVLQGMLHGQ--DLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R + +  ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + ++ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTHEHEYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL   G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPDDGIAIMNADNNDWLNWQSI---IGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + F  +  N+DF        S  +   +      +EV+    G H   N L    +  
Sbjct: 235 KTWRFSPNAANSDFSATNIHVTSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A        L+      GR    + A N+    L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGASHAAIKAGLANLKAVPGRLFPIQLAENK---LLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G+ S++ H+ + E      +  V  +G    A+ DA   S   
Sbjct: 352 ----GYRVMVVGDMAELGDESEACHVQVGEAAKAAGLDRVLSAGTLSKAISDA---SEVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +      L   +++ + +     V+VK S S     +++ L E
Sbjct: 405 EHFADKSALIERLKALITEKQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Lens]
 gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Lens]
          Length = 445

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/444 (31%), Positives = 210/444 (47%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN      I  + I
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V   L AL K+A A R      IIA+TGS GKTT KEM+   L     ++A  G+ 
Sbjct: 73  PQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A +K EI +GL  TG   +N DD++          +  K I  F     AD   +  
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFW---DDLIADKKILRFSSLHPADIYAQDI 247

Query: 264 KQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  +   +   + L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 248 RLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      Q   T+ID++YNAN  S+  A+ VLS       GR+I V GDM E+G
Sbjct: 308 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSGRP----GRKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A       H+  + + L   +++ L 
Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442


>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 457

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 191/464 (41%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  ++   I    +       V+ +  D+R + P E FFA+KG +YD +DF+     K 
Sbjct: 4   MSLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQGKAKQ 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VVV+   V S  +    V  V D L AL  LA   R      +I +TGS GKT+TK+
Sbjct: 64  AAAVVVSR--VLSAVNSGTAVLQVQDSLKALQALARYNRQLFNIPVIGVTGSNGKTSTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    KT    G+YNN IG+PLTL  M       + E+ M   GEI FL  L RP
Sbjct: 122 MIASVLGVRYKTLKTSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEIDFLCQLARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL      E IA+AK E+ + +   G   L+ + S    L   +     
Sbjct: 182 TGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLAGLTAG--- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  +G     D +    +  S  S   V       ++     G H   N L  +G+  
Sbjct: 239 -KVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQEDIFLPIPGRHNIINSLAAVGVGL 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +      L+       R +  +        T+I++ YNANP S KAA++ L+ + 
Sbjct: 298 ELGLSLPEIKAGLAEVVLTGMRMEIIKI----NGITVINDVYNANPDSSKAALTTLADL- 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                R+IAVLG M E+G  +   H ++          ++   G     +      +   
Sbjct: 353 -GHNRRKIAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLVTVGELARQIAVGAKNAGMP 411

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +   E        +       DV++VK S       +++ L
Sbjct: 412 ADRIFVYEDKQRACDCLGELCKKEDVILVKGSRGMHMEEVVSYL 455


>gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
 gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
          Length = 462

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 223/474 (47%), Gaps = 20/474 (4%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++  A+   +   +     +  +  D+R +  +  F  + G + DGH FIL 
Sbjct: 1   MISL-TIKEIAAAVGALNDTSMWSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILK 58

Query: 60  AVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           A++ GA   + +    D+   + +   PV  V+D L AL  LA     +    ++ ITGS
Sbjct: 59  AIENGARASLWSKSLKDLPFEVAADF-PVIQVEDTLKALQDLAKFYLTKVNPKVVGITGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTK+M    LSS  + +   G++NNHIG+P+T+  MP+D +  I E+GM+H GEI+
Sbjct: 118 NGKTTTKDMTDAVLSSQYRVHKTQGNFNNHIGLPITILEMPIDTEVVILEMGMNHAGEIK 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+ L  P +A+IT I  +H+  F     IA AK EI  GL++ G +    ++    LL+
Sbjct: 178 VLSDLAEPDVAIITMIGESHIEFFGSRAGIADAKMEISSGLKENGVLIYPGEEP---LLQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +   L  K + +FG +   D           Q+      +   M +    +G +   N 
Sbjct: 235 ERVTFLTDKQLKTFGTAAENDLYPLNIDAQMNQTSFTTN-ETPDMTISLPVLGTYNVNNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L    +L   +  +   L+ F   +    R    +      +++++YNANP +MKA 
Sbjct: 294 LAALMAGIVLGVPIQKSAPKLAKFQLTK---NRTEWLVGINGSRILNDAYNANPTAMKAV 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +   S      EG++I +LGDM E+GE S   H+ + E L+   I  V L G  +  L +
Sbjct: 351 LDNFSTF--ENEGKKIVILGDMLELGEHSSELHLSIKESLNPNQIKKVILYGEEMSVLYE 408

Query: 417 ALPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +L  +       +++   + L    +  +  GD V++KSS       ++  L +
Sbjct: 409 SLQETFANDNLFYFTGDKEPLIQLAKEQIEPGDYVLIKSSLGTDLLSVVRALQD 462


>gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 455

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLEHLL 455


>gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
 gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
          Length = 452

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 220/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + ++G   G      ++ ++ D+R + P   F A+KG  +D HDF   A + GA
Sbjct: 5   TLSQLAEILRGELKGA--DLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +       ++P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DTNLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A  +     L       GR    + A NQ    L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATHEAIKAGLKDLQAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ +        I  V  +G    A+ DA   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGVAAKAAGIDRVLSTGKLSQAISDA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   +++ + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKSALAAHLKALIAEHQVMTILVKGSRSAAMEEVVRALQE 448


>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 454

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/465 (25%), Positives = 218/465 (46%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGHD++  A+  
Sbjct: 4   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHDYVKEAMDN 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT K
Sbjct: 63  GAVASLWKKSYGTPPKG--VPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 121 DIIESILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGQIRNLSRIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++++   
Sbjct: 181 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKTS 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG+    D      +        ++      ++      G H   N ++ + + 
Sbjct: 237 SVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNH--TKIQYDVPLHGKHNIFNTIVGIAVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 295 QFYKVPTEKIQEA---LQQINITQMRFQFLTAKKGFTIINDAWNASPSSMKAAIETLQKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H
Sbjct: 352 NAYK--KKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYH 409

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 410 IGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIVQKWM 454


>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
 gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
          Length = 456

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 207/465 (44%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + + + G  +   +    + G+S D+R I     F  + G  +DGH+F   AV+KG
Sbjct: 5   TLETIAKIVGGTLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + +           I    VD+ L A  KLA +    + A ++ ITGS GKT TK+
Sbjct: 65  AVATLWDKRHPTPYLDAGI--IIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L    + +    + NN IGVP T+  M +D +  + E+GM   GEI+ LT++ RP
Sbjct: 123 ILASILKENFRVHNTAKNLNNEIGVPKTIMEMDLDDEVVVLEMGMERFGEIKTLTNIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +HL      E IA AK EI EGL+  G    N DD     +  +      
Sbjct: 183 DIAVITNIGDSHLLELGTKENIARAKFEILEGLKPDGVFIFNNDDEVLREVIKEYTI--T 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +   G  +++D  +R  +   E S   +             IG H   N  + + I  
Sbjct: 241 QKVIKIGTREDSDVIIRPIRSDEEGSSFSI----GEYAYSIPFIGKHQIYNASVAITIAG 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  +    ++ LS       R +    +     F ++++ Y +NP S+ + I  +  + 
Sbjct: 297 LLGMNYGDIVRGLSRVKLTGMRMELIHLS----SFDVLNDCYKSNPQSLTSCIETVYTMK 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +    +I +L DM E+GE  +  H  + E +    I +V   G     + +   R+ +V
Sbjct: 353 GYKN--KILILSDMLELGENERKLHFSVGEKIDRNKIDYVICIGDLAKEIYNGANRNFNV 410

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + ET + +   ++  + +  +++VK S      ++I +L E
Sbjct: 411 NNLFHFETNEEVVNKVRELISEDTLIMVKGSRGMKLEKIIEMLKE 455


>gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
 gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
          Length = 447

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 219/460 (47%), Gaps = 19/460 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + + + +   G    +  +  ++G+SIDSR+I     F   KG H DGH ++  A+ KGA
Sbjct: 7   SLNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGA 66

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         +PV  V+D L AL +L+ A        +IA+TGS GKTTTK+M
Sbjct: 67  YAALWQRDAGEVPRD--LPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K     G+YNN IG+PLTL ++  D +  I E+GMS  GEI  L+H+  PH
Sbjct: 125 IEAVLSPHFKVKKTQGNYNNEIGLPLTLCQLDEDTEISILEMGMSGFGEISLLSHIAEPH 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA IT I  +H+ +    E IA AK EI +GL  TG +F + D++  + L   +     K
Sbjct: 185 IAAITNIGESHMRDLGSREGIAKAKYEITDGL--TGPLFYDGDEALLKPLVKDN-----K 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +  G +++ ++ + +     +    +V         +   +G H A+N  + + I S 
Sbjct: 238 DAHRIGFNEDNEYYIHEMIMQDKHLQFKVNDD----TYIVPTLGSHNARNATIAIAIGSY 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +    +       +  G R      +    LI+++YNA+P SMKAAI  +SQ+  
Sbjct: 294 LGLSPEQINHS---LQQLKLTGMRMEQLEGKDGALLINDAYNASPTSMKAAIDTVSQMDS 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                +I V GD+ E+GE    +H  +   L    I +V+ +G     +  A      V 
Sbjct: 351 EV---KIIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNAARHISKAAEPFTTVQ 407

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + +T + L   ++  L     V+ K+S       +IN LL
Sbjct: 408 HFDTKEALTNHLKGMLNAHTSVLFKASRGMKLETIINELL 447


>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
 gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
          Length = 462

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 213/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGAS 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +        S  V  V+    AL  LA   + +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFDKEKIGKSSYVIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK E+ +   K   + +N D+      ++  +     
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLSNFESDKY----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIV 303
            +   G  K  DF         E    +V  QG++       +  G H   N L  +   
Sbjct: 241 KVCKIGTEKKFDFNGENLNLEEESIEFDVLEQGETAYKGFNVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  + +     +        R    +    +  FT+I++ YNA+P SMKAAI V+  +
Sbjct: 301 KVLDMNYEDIQTGIKNLKATSMRLDIIK----EKGFTIINDCYNASPDSMKAAIDVMKNV 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A K+       
Sbjct: 357 K---GKRTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYKEGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD+++VK+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILVKASRAMKLEEIVKELR 457


>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 450

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 211/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+            +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSEC---SELTKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPSDEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAEGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 454

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 216/468 (46%), Gaps = 20/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++L A +     +       G++ DSR++ P E F A+KG ++DGHD+   AV+ 
Sbjct: 1   MLKASEVLAATKA----VCADFEFTGVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVEL 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTT 122
           GA  VVV+ ++        + VF V+D L A  +LA A RLR +   + AITGS GKT+T
Sbjct: 57  GAAGVVVSHEVSGLPAG--VAVFMVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTST 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L   LS         G++NN IG+P TL  +  D D  + E+GM  LG+I  L  + 
Sbjct: 115 KDLLAACLSCKYNVVKTQGNFNNEIGLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIA 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   +IT +   H+     +E I  AK+EI   L + G   LN D+ +      K+ A 
Sbjct: 175 EPDSGLITNVGETHMELLGSMENIGKAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKA- 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300
               +  FG  +N DF+          +      +  G+++ V    IG H   N L  +
Sbjct: 234 ---KVVYFGLGENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    +  + +AL+       R +        G  T I+++YNA+PASM+AA+  L
Sbjct: 291 AGAFCYGVPMAVSAQALATARLTGSRQEIVYI----GDITFINDAYNASPASMEAALKTL 346

Query: 361 SQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           ++   + HG+ R IAVL DM E+G++S+  H  +        +  V   G     + D  
Sbjct: 347 AEAKKAAHGKARTIAVLADMLELGDISEDAHRRVGRWAVENGVDFVLTYGPQAAYIADEA 406

Query: 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   +          ++     GD++++K S+S    +++ L  
Sbjct: 407 AELGGKSKHCADRQEAADALRLMASAGDIILLKGSHSMQVDKMLELFK 454


>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
 gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
          Length = 450

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/461 (30%), Positives = 215/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + I         +  + G++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLQQIQEWIPCDIDSQYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++  P+  VDD L AL +LA A        +I +TGS GKTTTK+M
Sbjct: 65  GASFYEKGHDID-DNVKGPIIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  + +D +  I E+GMS   EI  L+++  P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDLDTEISILEMGMSGFHEIELLSNIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+K GT   + D+    LL+     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKKEGTFIYDGDEP---LLEPHVKKIKHA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G  ++           ++     +     +       +G H  +N  + + I   
Sbjct: 241 KCLSVGLKQDNALVCEVEHSENDGIAFSIN---GNEHYKLPILGIHNMKNAAIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T        +  +  G R    +     T+I+++YNA+P SMKAAI  LSQ+  
Sbjct: 298 LGLKYETIQH---NINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTLSQM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             EGR+I VL D  E+GE S+S H ++   L   NI  +   G     + D   + + HV
Sbjct: 353 --EGRKIIVLADSLELGENSRSMHEEVGAYLEGKNIHTLLTYGKDAKYISDIGGQFVDHV 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y      L  ++ ++LV  D V+VK S       ++N L+
Sbjct: 411 EYFIDKQQLTQYLINNLVANDKVLVKGSRGNKLEEVVNKLI 451


>gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
 gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
          Length = 470

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 210/477 (44%), Gaps = 20/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +   +  A+ G   GI P   V G ++ DSR +     F A+ G   DGHD++  
Sbjct: 1   MIPV-SCGQIADAVGGELAGIDPAAVVTGAVAKDSREVVAGGLFVALPGERVDGHDYVPA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
             + GA + +    +         P   V D   AL +LA     +  + T+I +TGS G
Sbjct: 60  VTEAGATVSLTTRPVDG------CPCIVVADTQVALGELARYVVAQLPELTVIGLTGSQG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   ++    T A  GS+NN IG PLT  +   D  + + E+G  HLG+I +L
Sbjct: 114 KTSTKDLIAQLVAPYGPTVAPTGSFNNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P + ++  +  +H+  F   + IA AK E+   +   GT  LN DD     + ++
Sbjct: 174 CRITPPKVGLVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGTAVLNADDPRVAAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     +TI +FG++  AD +    +   E      +   G+S  V    IG H   N L
Sbjct: 234 TE----QTIRTFGEAPEADVRATDLEVDGEGRPGFTLHADGQSFPVQLQLIGEHNVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   +    +     L+          R          T+I+++YNANP S++AA+
Sbjct: 290 AAATAALAVGLTPEQVADGLNAAARVSQA--RMEVVERPDGVTVINDAYNANPDSVRAAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L  I    E R  AVLG+M E+G+ S + H  +  +    +++ +   G     +   
Sbjct: 348 KALVAIGRAREARTWAVLGEMLELGDSSATEHDAVGRLAVRLDVNRLLAVGEGAKPIHLG 407

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                       Y  T+      ++  L  GDVV+VKSS +     L + LLE  PA
Sbjct: 408 ASLEGSWGNESAYVATIAEALELLRGELRSGDVVLVKSSKAANLRSLADALLETAPA 464


>gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
 gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
          Length = 452

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELKGA--DIALDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAGAALAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A  D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATRDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAIGVA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   +++ + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALIAHLKTLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
           propionicus DSM 2379]
 gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter propionicus DSM 2379]
          Length = 469

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 197/467 (42%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +++  ++  A  G   G      V+G+S DSR++A  + F  ++G  +DGHDFI     K
Sbjct: 1   MFSIAEIAAATAGGFQGDR-SARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   V+ +      I    + V  V D L AL  LA A R R    ++ ITGS GKTTTK
Sbjct: 60  GVAAVLADQSFDGEIPP-GLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L          G+ NN IG+P  L R+     + + E+GMS  GEI  L  +  
Sbjct: 119 EMLATILEQTGPGLKTAGNLNNLIGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAA 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   ++    PAHL +   +E +A AK E+   L   G   +N DD    L+  +    G
Sbjct: 179 PQTGIVLNACPAHLESMGSVEGVARAKGELLLRLPAGGCAIINADDP---LIAGQPSPPG 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           ++   +FG   +AD +  +            + L    + VV    G H   N L     
Sbjct: 236 VRR-LTFGLG-DADVRATEITSLGIGGQSFLLHLGEIVLPVVLWSYGRHAVYNALAAAAA 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +     L  F P + R +        G   LID+SYNANPASM+AA++ L +
Sbjct: 294 AHGLGIAAELIQSGLERFRPYDKRFQLEDV----GGLVLIDDSYNANPASMEAALTTLGE 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRS 421
           +     GR    LGDM EMG      H  L    +      ++L G  +      AL   
Sbjct: 350 LKG--GGRAFVALGDMLEMGSNEAELHRALGVRAAAV-ADRLYLCGPLMAHAAVGALSAG 406

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +    V      D +   I      GD V+VK S      ++   + 
Sbjct: 407 MVEEQVMRIPDHDEIAASILRQARPGDFVLVKGSRGMRMEKVAEAIR 453


>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Paris]
 gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Paris]
 gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 445

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/444 (31%), Positives = 210/444 (47%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN      I  + I
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V   L AL K+A A R      IIA+TGS GKTT KEM+   L     ++A  G+ 
Sbjct: 73  PQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A +K EI +GL  TG   +N DD++          +  K I  F     AD   +  
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFW---DDLIADKKILRFSSLHPADIYAQDI 247

Query: 264 KQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  +   +   + L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 248 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      Q   T+ID++YNAN  S+  A+ VLS       GR+I V GDM E+G
Sbjct: 308 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSGRP----GRKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A       H+  + + L   +++ L 
Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442


>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
          Length = 450

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S S H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNL--LTKGRRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
          Length = 450

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLAATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
 gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
          Length = 457

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 225/465 (48%), Gaps = 13/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F ++++A++G           N IS D+R I     F A+KG +++ +D+I+ A  K
Sbjct: 3   LLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASVK 62

Query: 64  GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G+ L +V+      S  + +  +  V++   AL  LA   R +    +I ITGS GKT+T
Sbjct: 63  GSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   ALSS  K +   G++NN +G+PL +  +    D  + E+GMS+  EI  L  + 
Sbjct: 123 KDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFDEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IA+IT I  +H+ N    E I  AK EI +   +   + +N ++   + +K+  + L
Sbjct: 183 KPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKENDLLKTVKSNDYKL 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S G  K+ D+               V  + +         G H   N ++ +  
Sbjct: 243 -----MSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGKHNILNSMLAIVA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  + D   + +        R    +    +  FT++D+SYNA+P SM+AAI V++ 
Sbjct: 298 GRTLGIEYDKLKQGIKNLSVTSMRLDIVK----KDGFTIVDDSYNASPDSMRAAIDVINT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I  +   R+IA+LG M E+G+ S  FH ++AE     NI  +   G    A K+     I
Sbjct: 354 IKGN---RKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVGEFNEAYKEGYNNDI 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    +T++    FI ++L   D+++VK+S S  F  ++N L ++
Sbjct: 411 NFMAFDTIEDASDFITNNLNKEDIILVKASRSMKFEYIVNKLKDK 455


>gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
 gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
          Length = 494

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/478 (39%), Positives = 262/478 (54%), Gaps = 12/478 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQG--------FVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           PLWT   +L A  G                  V G+SID+R++   + FFAI+G   DGH
Sbjct: 4   PLWTLDAVLAATGGTLAAAGDDAAGRDGAAQPVAGLSIDTRTLKVGDLFFAIRGETRDGH 63

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           DF+  A+ +GAG  VV+    A +      + +P  G D VL A+  LA AAR RS A +
Sbjct: 64  DFVRDALARGAGAAVVSQARAAELAGSGPLVVVPEAGDDPVLAAMRALAAAARARSAARV 123

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TGSVGKT TKE L   L++   T+A + SYNNH GVPLTL RMP    FG+FE+GM+
Sbjct: 124 LAVTGSVGKTGTKEALRHVLAAQGTTHASVASYNNHWGVPLTLGRMPAGSAFGVFEIGMN 183

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H GEI  L  LVRP IA++TT+ P H+ +F  +  IA AK EIF GLE  G   LN D+ 
Sbjct: 184 HAGEIAPLARLVRPEIAIVTTVEPVHIEHFRSLSGIADAKGEIFCGLEPGGIAILNRDNP 243

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            FE L A + A     I SFG+   AD +  +     + S ++  + G  +       G 
Sbjct: 244 HFERLSAHALASRAGRIVSFGEHPQADVRAERIVMRPDLSIVDASVLGVPVTYQLGTPGR 303

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N L  +  V  L AD+  A  +L+  HP  GRG+R    L +G   L+DESYNANP
Sbjct: 304 HTALNSLAVMAAVHALGADLALAALSLAQLHPPVGRGERTLLRLREGEALLVDESYNANP 363

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           AS++AA++ L+ I   G+GRRIAVLGDM E+G  +   H +LA  +  + I  V+ +G  
Sbjct: 364 ASVRAALATLAGIEIRGQGRRIAVLGDMLELGSEAPRLHRELAASVEQHGIDLVFAAGPM 423

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +  L ++LP       + T   L   + S +  GD V++K SNS    R++  L   +
Sbjct: 424 MAELFESLPAGTRGVAAPTSAELLDAVLSEIRPGDAVMIKGSNSIRMGRIVEALKARY 481


>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium DO]
 gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
 gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
          Length = 470

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 21  MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 74

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 75  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 132

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 133 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 193 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTATL- 251

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 252 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 304 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 361 KNLPT--KGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 418

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 419 KYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 468


>gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces albus J1074]
 gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
 gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
          Length = 474

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/479 (30%), Positives = 216/479 (45%), Gaps = 27/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    I      V G + IDSR  AP   F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEISSIVGGQPADIPDLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+           + +P   VDDV  AL  LA A   R   T++A+TGS G
Sbjct: 60  TAVETGAVAVLATRP-------VGVPALVVDDVERALGALARAVVERLGTTVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L+ +  T    GS NN IG+PLT  R   D    + E+G   +G IR+L
Sbjct: 113 KTSTKDLVAQLLTRVAPTVWTPGSLNNEIGLPLTALRAEADTRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I V+  +  AH+  F G E+IA AK E+ E L + G   LN DD +   + ++
Sbjct: 173 TGLTPPRIGVVLNVGSAHIGEFGGREQIAQAKGELVEALPEDGVAILNADDRYVRDMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     + +FG++  AD +    +          +       +V     G H   N L
Sbjct: 233 TKA----RVVTFGEAPEADIRAENVRLTENGRPAFTLHTPSGCGDVTMRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + S L   VD   +ALS          R          T+++++YNANP SM+AA+
Sbjct: 289 AAAAVASELGMPVDEIAQALSEAESLSRW--RMEVTERPDGVTIVNDAYNANPESMRAAL 346

Query: 358 SVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L  +        GR  AVLG M E+G+ + + H  +  +    N+S +   G      
Sbjct: 347 RALVAMGGARRGEGGRTWAVLGQMAELGDEALTEHDAVGRLAVRLNVSKLVAVGGREAAW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LL +
Sbjct: 407 LQMGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEKVAAALLAD 464


>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
 gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
          Length = 451

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 211/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + + I         +  + G++IDSR +  +  F   KG + DGH F+  A++ GA
Sbjct: 5   SLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G          S  S+  P+  VDD L AL +LA A        +I +TGS GKTTTK+M
Sbjct: 65  GASFYEKGQDIS-DSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  +     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEP---LLKPHVENVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G +       +     ++     +             +G H  +N  + + I   
Sbjct: 241 KLVSVGLNHENTLVCKVENSKNDGIAFMIN---NKEHYELPILGIHNMKNATIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +T  K +S       R +R+   +     T+I+++YNA+P SMKAAI  LS    
Sbjct: 298 LGLDYNTIQKNISNVQLTGMRMERH---VTDNQITVINDAYNASPTSMKAAIDTLS---- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
           H  GR+I VL D  E+GE SQ  H D+   L    I  +   G     +       +  V
Sbjct: 351 HMNGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGNDAKFISRTGGHFVEDV 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y    + L  +++S L   D V++K S       ++N L+
Sbjct: 411 AYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451


>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
 gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
          Length = 468

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 223/474 (47%), Gaps = 16/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T+ ++  A       G V    V  I+ D+R +   + F A++G ++DG  F   
Sbjct: 1   MKNGLTWDEICAATDASVRRGGVAGDTVLPITTDTRKVEAGDLFVALRGENFDGTAFAAE 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           A+++GA  V+V+    AS+ +        V   +D L A   +A A R++    ++AITG
Sbjct: 61  ALERGAAAVLVDQKTPASVLAALNAAHGGVLVAEDTLRAYQDIAHAWRMKFNIPVVAITG 120

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++    LS   K      +YNN +G+PLTL  +  +    + E+GM  +G+I
Sbjct: 121 SNGKTTTKDLTAAVLSGRGKVCRTAANYNNEVGLPLTLLSITPEDTAAVVEIGMRGMGQI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +  P I ++T +   H+     IE IA AKAE+   +   GT+ LN DD     +
Sbjct: 181 AALAPIAEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAGM 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +S A     + ++G S  AD +    +  ++ S   V   G+  E      G H   N
Sbjct: 241 --RSSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L    +L        + L+    ++ R + ++     G +TLI+++YNA+P+SM+A
Sbjct: 299 ALAALAAGFVLGMTPQEMQEGLTHLTAEKMRYEVHQV----GAWTLINDAYNASPSSMRA 354

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++   + + P   GRR+AVLGDM E+G  +++ H D+   ++    + V   G       
Sbjct: 355 SLETTAALYP---GRRVAVLGDMLELGTAAEAAHRDVGRRVAELGFAMVVTYGRQAQWTH 411

Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    +      ++ +      +++  L+DGD V+ K S      ++I  L  E
Sbjct: 412 ETAEAAGCPDCCHAASHADAAAYLRRHLMDGDTVLFKGSRGMRMEQIIAALTGE 465


>gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Micromonospora sp. L5]
 gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora sp. L5]
          Length = 469

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 203/474 (42%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A+ G  +G  P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A+  GA  V+   ++        +P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AISAGAVAVLGTREVPG------VPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   +  + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   + + ++
Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPDDGLAVLNADDPRVDAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G+S++AD +               +     S  V     G H   N L
Sbjct: 234 TRA----RVVRYGESEHADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL+         +R          T+ID+SYNANPAS   A+
Sbjct: 290 AAAAVGRELGLPLPDLAAALNELGLVS--TRRMDVFERPDGVTVIDDSYNANPASTGVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +     GR +AVLG M E+G+     H  +  + +   +  + + G     + + 
Sbjct: 348 RALASMRGE--GRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVGEPAAPIHEG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                                  ++S L  GDVV+VK S     + + + L  +
Sbjct: 406 ATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALRAD 458


>gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 458

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/470 (37%), Positives = 240/470 (51%), Gaps = 17/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++ QA  G +        V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MTALWTSEEIAQATGGVASAPF---AVSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+  +         P   V D   AL  LA A+R R +  ++ +TGSVGKT
Sbjct: 58  FGQGAAGAIVSEAIAQ-------PHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKT 110

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL  I   + +  + SYNNH+GVPL+L+RMP +  +G+FE+GM+H GE+  L
Sbjct: 111 GTKEALFHALDRICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  VRPH+A++T IAPAH+  F   E+IA AKAEIFEGLE  GT  + YD      L AK
Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + I +FG    AD   R+        + +   L G  +       G H   N L
Sbjct: 231 AEKHAAR-ILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V  +  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM A  
Sbjct: 290 AVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMAA-- 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L Q+     GRRIAVLG M E+G+ S+  H  L E L   ++ +  L G  +  L +A
Sbjct: 348 -TLKQLGREQAGRRIAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGDEMQPLAEA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   I   +          IQ  +  GD ++VK SN  G  RL+  L E+
Sbjct: 407 LGGVIAFDHVPDAAKATDLIQGEMRAGDAILVKGSNGIGLSRLVAALQEK 456


>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
 gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
          Length = 450

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 226/466 (48%), Gaps = 24/466 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +   A+    +G       + +  DSR+I   + F A+KG ++DG+ F   A++ 
Sbjct: 1   MMMLSEAAAALGVQHMGA--DVQFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALEL 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+   V +      P   V D   AL +LA   R +    ++A+TGS GKTTTK
Sbjct: 59  GAAAVLVSDASVQAE-----PRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTK 113

Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML+  LS    +    +A  G+ NN IGVPLTL +M     + + E+GM+HLGEI +LT
Sbjct: 114 EMLSAILSVVAGAKASVHATYGNLNNDIGVPLTLLKMQPAHQYAVVEMGMNHLGEIDYLT 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H+ +P +A+I     AH+      E IA AK EIF GL+  G   +N D  +    K+ +
Sbjct: 174 HIAQPDVALINNAGIAHIGELGSRENIAKAKGEIFAGLKSDGVAVINADSDYAYYWKSLN 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + I +FG    AD   R +++    + + +      + V  +  G H   N L  
Sbjct: 234 ---PHRKIVTFGLKNPADVSAR-YQENDGYASVVLATASDEVSVQLNVQGEHNISNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++   + L+ F    GR +R           +ID++YNANP SMKAAI+V
Sbjct: 290 GATAYALGVSLNDIGRGLASFTGVYGRLER---KAGINGAVVIDDTYNANPDSMKAAINV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L++++    G++I VLGDM E+G  ++S H ++        ++ ++  G   +    +  
Sbjct: 347 LAKLA----GKKILVLGDMGELGADAKSMHAEVGAYAKAAGLTTLYCLGNLSVETARSFG 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +  + + +   +  +L  G  V+VK S      R++NLL+
Sbjct: 403 AG--AEHFSSPEAIAQAVLPALAQGTTVLVKGSRFMQMERVVNLLV 446


>gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 469

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 217/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   + G  +       V  +S D+R+I     + A+KGP+++GHDFI  A   GA
Sbjct: 5   TLSWIAGKVNGKLVNGNADTQVLAVSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+ + ++  S     +PV  V+D   AL  L  A +       IAITGS GKTT KEM
Sbjct: 65  SAVIASENVTTS-----LPVISVEDTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L+      A  G++NN IGVPLTL R+    ++ + ELG +HLGEI + T+LV+P 
Sbjct: 120 CAAILARRGNVLATNGNFNNDIGVPLTLLRLEPHHEYAVMELGANHLGEIAYTTNLVKPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A I   A +HL  F  +  +A AK+EIF+GLEK G   +N D  F E  + K   L   
Sbjct: 180 VATIVNAAASHLEGFGSLLGVARAKSEIFKGLEKDGVAIVNVDSQFAEFWQGK---LKQT 236

Query: 246 TIYSFG--KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +F   +  +ADFQ        +  +   +      + +     G H   N L+   +
Sbjct: 237 KTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQLTIPGVHNVGNALVAAAL 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + A+++     L       G   R           L+D++YNAN AS+ AAI  LS 
Sbjct: 297 TLQVGANLENVRDGLIAMQQVSG---RLNVKQLTDQVRLLDDTYNANVASVNAAIDTLSS 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S    G R+ VLGDM E+GE ++ +H  + E      I++++  G    +       + 
Sbjct: 354 FS----GIRVLVLGDMKELGEKARFYHEQVGEYAKQKGINYLYTMGVLSQSASAVFNEN- 408

Query: 423 HVHYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINL 463
              +   ++ L   ++S L     D+ ++VK S S    R++  
Sbjct: 409 -GGHFSDVESLLAAMESDLLVQQRDISILVKGSRSSKMERVVEA 451


>gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 455

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 211/466 (45%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+  F   ++IA AK EI + L++ G    N D+   +    K + L  
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +         +      +   +      ++     IG H   N L  + +  
Sbjct: 239 ----TFGFNSTDTIYATNFNSYMHHASFAI--NDSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     +AL+ F P      R +         ++ + YN+NP + KA ++  SQ+ 
Sbjct: 293 TFGVPDVEIAQALANFVPTA---NRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVD 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420
               GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL      
Sbjct: 350 VDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYES 409

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 410 SALHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 452

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 215/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T       ++G   G      ++ ++ D+R +     F A+KG  +D HDF+  A + GA
Sbjct: 5   TLSQAAAILKGTLQGQ--DLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKENGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     T    G+ NN IGVP+TL R+  + +F + ELG +H GEI +   L  P 
Sbjct: 118 TAAILGQCGNTLYTAGNLNNDIGVPMTLLRLTKEHEFAVIELGANHQGEIAWTVSLTCPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +E +A AK EI+ GL   G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAKAKGEIYTGLPADGIAIMNADNNDWLNWQSI---IGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + F  +  N+DF        S  +   +      ++V+    G H   N L    +  
Sbjct: 235 KTWRFSPNAANSDFTATNIHVTSHGTEFTLNTPTGGVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A  D     L+      GR      A N+    L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGASHDAIKTGLANLKAVPGRLFPIPLAENK---LLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G+ S++ HI + E      +  V  +G    A+  A   S   
Sbjct: 352 ----GYRVMVVGDMGELGDESEACHIQVGEAAKAAGLDCVLSAGKLSQAISQA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +  T   L   + + + +     V+VK S S     +++ L E
Sbjct: 405 EHFATKAELIERLNALIAEKQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 460

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 118/465 (25%), Positives = 216/465 (46%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--VPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++++   
Sbjct: 187 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKTS 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +F +    D      +        ++      ++      G H   N ++ + + 
Sbjct: 243 SVNCKTFSEKDTNDLFPTNVQLDEYGVHFKLNH--TKIQYDVPLHGKHNIFNTIVGIAVG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 301 QFYKVSTEKIQEA---LQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H
Sbjct: 358 NAYK--KKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAEFVAEEARKNYH 415

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 416 IGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIVQKWI 460


>gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 469

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 202/474 (42%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A+ G  +G  P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A+  GA  V+   ++        +P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AISAGAVAVLGTREVSG------VPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   +  + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   + + ++
Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPSDGLAVLNADDPRVDAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G+S+ AD +               +     S  V     G H   N L
Sbjct: 234 TRA----RVVRYGESERADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL+         +R          T+ID+SYNANPAS   A+
Sbjct: 290 AAAAVGRELGLPLPDLAAALNELGLVS--TRRMDVFERPDGVTVIDDSYNANPASTGVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +     GR +AVLG M E+G+     H  +  + +   +  + + G     + + 
Sbjct: 348 RALASMRGE--GRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVGEPAAPIHEG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                                  ++S L  GDVV+VK S     + + + L  +
Sbjct: 406 ATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALRAD 458


>gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli]
 gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli K-12]
          Length = 452

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 217/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A    A
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 RALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
 gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
          Length = 463

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 151/471 (32%), Positives = 228/471 (48%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P +   D +  + G  ++G +      G+S D+R IA  + F A++G ++DGHD++  
Sbjct: 2   MRP-FALADAVNWLGGTVAVGDLDGLMFQGVSTDTRRIASGDVFVALRGENFDGHDYLAV 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA   VV+     +  S+ +P   V D + AL +LA+A R  S A  +AITGS GK
Sbjct: 61  AEKAGAVAAVVDK----ADPSMGLPQIRVSDTIDALAQLALANRNASTARFVAITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT +EM+   LS +  T A  G+ NNHIGVPLTL R+  +   G  ELG S LGEI    
Sbjct: 117 TTVREMVAAILSQVGNTLATEGNLNNHIGVPLTLFRLSPEHQLGAIELGASGLGEIAHTV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++VRP + ++T    AHL  F G + +  AK EI +G  +TG + LN DD  F+L + ++
Sbjct: 177 NIVRPEVVILTNAGQAHLEGFGGYDNVVRAKGEIIDGAPETGLVVLNSDDPAFDLWRQRA 236

Query: 240 HALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNM 296
              G + +       S+ AD+         +      Q   G S +V     G H   N 
Sbjct: 237 ---GQRRVAGVSGRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ +     L AD +     L+   P +GR +           T+ID+SYNANPASMKAA
Sbjct: 294 LLAIAAARELGADNEAIKAGLAALKPVKGRLQMMVLTPK---LTVIDDSYNANPASMKAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL+         R+AVLG M E+G+ S + H ++ E      I  +   G       +
Sbjct: 351 LDVLAARPAS----RVAVLGAMAELGQDSLALHREIGEFARARGIERLIAVGPGCEGYVE 406

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  V    + D     +     +   V+VK S S    R++  + E+
Sbjct: 407 GFGDAAEV--CASHDDAVRRLFEGPAESQTVLVKGSRSSAMDRVVEGIQEK 455


>gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 458

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 211/468 (45%), Gaps = 25/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   +  A+ G  IG      ++ +  D+R +     F A+KG  +D HDF   A
Sbjct: 1   MIPV-SLQAVALAVNGQLIGA--DTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V KGAG ++V+  +         P   V D   AL  L    R +  A IIA+TGS GKT
Sbjct: 58  VAKGAGALLVSKRLPIDA-----PQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + +F + ELG +H+GEI +  +
Sbjct: 113 SVKEMSAEILRQCGNVLYTAGNFNNDIGVPLTLLRLEPEHEFAVVELGANHVGEIAYTVN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P  A++  +A AHL  F  +  +A AK EIF+GL   GT  +N D + +   + K  
Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEK-- 230

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +  + ++ F    ++  DF     +   + +  E+     ++ V+    G H   N L 
Sbjct: 231 -ITHQRVWRFSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A ++   + LS      GR    R    Q    ++D++YNAN  SM AA  
Sbjct: 290 ATALTMSVGATLENVRQGLSELKAVPGRLFPIRLNAQQ---LILDDTYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL  +     G R+ V+GDM E+G   +  H  +        I  V   G     + +  
Sbjct: 347 VLGSMP----GYRVMVVGDMGELGTEEEDCHRQVGIAAREAGIDKVLSVGRLSHLISE-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLL 464
             S    +      L   +++ L +     ++VK S S    +++  L
Sbjct: 401 -TSGCGEHFTDKTALIERLKNLLCEHAAITILVKGSRSAAMEQVVRGL 447


>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 460

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 223/468 (47%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++++AI            Q  VNG+  D+R + P + F  + G H DGHDFI +A+
Sbjct: 3   MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +  +D    +  ++IP   VDD L A  KL+     +    +IA+TGS GKTT
Sbjct: 62  KGGAVATLWASDHTDRLP-VAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS          ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ L
Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A+IT I  AH+  F   ++IA AK EI  GL+  G    + D+    LL  ++  
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQ 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      +FG+S   D    K       +  EV L     +V    +G +   N L  + 
Sbjct: 238 VDFSK-MTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +        I+ LS F   +    R           ++ + YN+NP + +  ++  S
Sbjct: 296 VGKLFQIPQIEIIQKLSHFDLTK---NRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
           Q      GRRI VLGDM E+G+ S   H  LA  +    I+ V+L G  + AL + L   
Sbjct: 353 QTD--VMGRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             P ++H + ++ +D L   ++  +   D V++K+S+      ++  L
Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKL 458


>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 462

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/465 (26%), Positives = 215/465 (46%), Gaps = 19/465 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LAEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V+    +   IG  S  V  V++   AL  LA   R +    ++AITGS GKT+TK+
Sbjct: 66  LCIVSEINFSEGKIGESSY-VIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P
Sbjct: 125 LVGAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  +H+ N    E I  AK E+ +   K   + +N DD F    ++       
Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNFESDKF---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGI 302
             +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +  
Sbjct: 241 -KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSLTAIAC 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  
Sbjct: 300 GRALDINYKDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKN 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      R IA+LG M E+G      H +++E      I  ++  G    A ++      
Sbjct: 356 IK---GKRTIALLGSMRELGNEGYRAHREVSEYAREKGIDLLFSIGEFGEAYREGFGEIN 412

Query: 423 HVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +Y           +I++ + DGD++++K+S +     ++  L 
Sbjct: 413 KENYKSFLNNKEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 480

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 263/467 (56%), Gaps = 3/467 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +  A++    G  P   V G+SIDSR++ P +A+FAIKG  +DGH F+  A++ 
Sbjct: 6   LWTLDAMASAMRAERSG-APSDVVFGLSIDSRTLTPGDAYFAIKGEAHDGHAFVAAALEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + VV  +      +    +  VDDVL AL  LA AAR R +  +IA+TGSVGKT+TK
Sbjct: 65  GAAVAVVAREQRDQFAA-DARLLIVDDVLEALRDLARAARARLEGQVIAVTGSVGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L    ++  +T+A + S+NNH GVPL+LAR P    F +FE+GM+H GEI  L  LVR
Sbjct: 124 EALRAVFAAQGETHASVASFNNHWGVPLSLARCPASARFAVFEIGMNHAGEIEPLVGLVR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+ P HL  F GIE IA AKAEIF GLE  G + LN D++ F  L   + A G
Sbjct: 184 PHVAIITTVEPVHLEFFDGIEAIADAKAEIFAGLESGGAVVLNRDNAQFTRLAECAEARG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           IK I SFG    AD +L       + S +  ++ G+++       G H A N L  L   
Sbjct: 244 IKRIVSFGADGRADAKLIDIALQPDCSAIRAEIGGQTVTYKLGMPGRHQAINSLAVLAAA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQ 362
            +  AD+  A   LS   P  GRG R R  + + G  TLIDESYNANPASM AA++VL  
Sbjct: 304 ELAGADLALAALTLSQVVPAAGRGVRKRLEISHSGEATLIDESYNANPASMAAALNVLGG 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +P  +GRRIAVLGDM E+G  S   H  L   +    I  V+  G  +  L DAL    
Sbjct: 364 AAPGPQGRRIAVLGDMLELGPRSAELHAGLNAAVKANAIDTVFCCGPMMRHLWDALSTGK 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+E    L   +  ++  GDV++VK S       +++ L + +P
Sbjct: 424 RGGYAENSAALESHVVGAVRAGDVIMVKGSLGSRMKTIVSALEKRYP 470


>gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pseudoalteromonas atlantica T6c]
 gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 471

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 214/472 (45%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ +   + Q +QG  I     I     + G+S D+R I   + F A+ GP++DGH F
Sbjct: 1   MIPV-SLAWIAQQVQGEIIRSENSIAEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A   GA  VVV+  +   +         V D   AL  L  A +       +AITGS
Sbjct: 60  IEQAQTSGAIAVVVSRQVETPLA-----QILVSDTKAALGLLGQAVKREVAPKTVAITGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM+   LS   K  A  G++NN IGVPLTL R+    +F + ELG +HLGEI 
Sbjct: 115 SGKTTVKEMVAAILSRRGKVLATKGNFNNDIGVPLTLLRLEAQHEFAVVELGANHLGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P +A I   A AHL  F  +  +A AK+EIF+GL K G    N D  F+    
Sbjct: 175 YTTELVKPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWH 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
            K   L  +    F     AD+  +         +   +      + +     G H   N
Sbjct: 235 GKYEHLRNQR---FSTQGEADYYAQDVVLGLSGCADFLMVTPIGKVSITLPLPGIHNVSN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L++  +   + A++      L       G   R +     G   ++D++YNAN AS+ A
Sbjct: 292 ALVSAALAIEVGANLQDVQAGLQYMAQVSG---RLQVKQLSGQVKVLDDTYNANVASVNA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI +L   +    GR+I VLGDM E+GE ++ +H  + E      I  ++  G    +  
Sbjct: 349 AIDLLGSFA----GRKILVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSAS 404

Query: 416 DALPRSIHVHYSETMDGLF--LFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
           D   +S   ++    D L   L    +    D+ ++VK S S     ++  L
Sbjct: 405 DVYQKS--GYHFSDKDKLVAALAEHLAAEKRDISILVKGSRSARMELVVEAL 454


>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 170/439 (38%), Positives = 237/439 (53%), Gaps = 4/439 (0%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+ IDSR++   + F A+ G   DGH  +  A+  GA   +V+       G  +  +  
Sbjct: 37  TGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSR---IPAGIATDRLLV 93

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L  LA A+R R    ++ +TGS+GKT TKEMLT AL    + +A  G+ NNH 
Sbjct: 94  VEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLNNHF 153

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTLARMP D D  + ELGM+H GE+  L  L RPH+A+IT +A  HL  F  +E IA
Sbjct: 154 GLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVEAIA 213

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AKAEI EG+E  GT+ LN D+ FFE L+  + A GI    SFG    AD ++      +
Sbjct: 214 DAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCAVDA 273

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             + +   +    +       G H A N L  L +V  L  D+ +A   L+   P  GRG
Sbjct: 274 NGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPRGRG 333

Query: 328 KRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           +R   +L   G   +ID++YNA+P S+ AA++ LS   P   GRRIAVLGDM E+G  + 
Sbjct: 334 RRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGPQAA 393

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H DLA++     I  V+ +G  +  L DALP S    ++   D L   + ++L  GDV
Sbjct: 394 KLHADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLVLAALRPGDV 453

Query: 447 VVVKSSNSCGFYRLINLLL 465
           V+VK S      R +  LL
Sbjct: 454 VMVKGSKGSLVSRTVTALL 472


>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 459

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 216/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A +G+ I   P+   N +SID+R +     + AIKG ++DG+DF++ A+ KGA
Sbjct: 5   TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L +++         L+      V++   AL +LA   R +    +I +TGS GKT+TK+
Sbjct: 65  ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  ALS   K +   G++NN IG+PL +  +    D  + E+GMS L EI+ L+ + RP
Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+ N    E I  AK EI     K   + +N+DD +   +    + L  
Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRLIK 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +I      KN D +        +    ++       +      G H   N L+ +    
Sbjct: 245 ASI---SDDKNIDLKGESLVLKEDSCEFKLN----ESKFYIPMPGKHNISNALLAIACAR 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +          F   E    R     N+G  T+I+++YNA+P SMKAAI V+  + 
Sbjct: 298 ELGVEDQLI---NKGFLNIEATSMRLDIEKNKG-ITIINDTYNASPDSMKAAIEVMKNLK 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAV+G M E+GE S  +H ++       ++  +   G    A  +        
Sbjct: 354 ---GKRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGEFAKAYSEGFNNKNSS 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +G   ++ S + + D+++VK+S S  F  ++  L 
Sbjct: 411 IELAEKEGAIAYLTSEIREEDIILVKASRSMKFETIVEALK 451


>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 454

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 204/461 (44%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + I         Q  ++G+SIDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLKQIKEWIPCEIDDQYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D       +  P+  VDD L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQND-AKPDHEIEGPIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLKPAFKVKKTQGNYNNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     L   
Sbjct: 184 IAVITNIGESHMQDLGSREGIARAKFEIVSGLKPGGVFIYDGDEP---LLKPHVDTLKDT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G +++        +  +      +             +G H  +N  + + I  I
Sbjct: 241 EAISIGLAQDNSVVCSVEQHDAMGIAFTLNTNE---HYQIPILGTHNMRNAAIAISIGKI 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +            +  G R          ++I+++YNA+P SMKAAI  L+ +  
Sbjct: 298 LGLSYEEI---QENISKVKLTGMRMELHRTDSNISVINDAYNASPTSMKAAIDTLAAM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+GE S   H  + + L    I+ +   G   + + +    ++   
Sbjct: 353 --DGRKILILADVLELGENSAEMHASVGDYLQDKGINLLLTFGDEAVHIYENGKANVDEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H+    + L  FI       D +++K S       + + L+
Sbjct: 411 HHFNHKNELIEFITQHAQAEDEILIKGSRGMKLEEVSDALI 451


>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 462

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 213/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +         +  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++        
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF----- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
            +Y  G  K  DF        +E    ++  QGK+       +  G H   N L  +   
Sbjct: 241 KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +    +  FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVK----EKGFTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 K---GKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +Y      +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 461

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 227/466 (48%), Gaps = 13/466 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +A+         +   +  ++ D+R + P   F  +KG   DGHD+I  A+Q G
Sbjct: 5   TVAEITKAVGAIDYQSAHRFETIESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+     +     +      V+D L A  KLA     +    ++ ITGS GKTTTK+
Sbjct: 64  ATAVLWGKKDLTPPEGICA--IWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M   AL +  + Y   G++NN IG+P T+  MP   +  + E+GMS+  EI FL+ L RP
Sbjct: 122 MTAAALGARYRVYKTQGNFNNDIGLPQTILDMPESTEALVLEMGMSNFHEIEFLSKLARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +  IT I  +H+      E IA AK EI  GL++ GT      +       A++     
Sbjct: 182 EVVAITLIGESHMEQLGSKEGIAKAKLEILSGLQEKGTFIYPAHEDLITAGIAQAEKPAT 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I + G+    +   +  +  S+ +  E+    +++ V    +G +   N L+ + I  
Sbjct: 242 FKIVTVGEGSK-ELSTKNIELYSDHTAFELVTPTETVAVTLPVLGAYNVSNALLAIEIAR 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +   + AL+ F   + R +  +    Q    +++++YNA+P +MK+ I     +S
Sbjct: 301 TLEVPLSDIVSALANFELTKNRTQWVK---GQNGVAILNDAYNASPIAMKSVIQSF--VS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GRR+ VLGD+ E+GE S+  H  ++EV+S   ++ V+L G  + AL DAL     +
Sbjct: 356 VEATGRRVLVLGDIRELGEHSKELHASISEVISPSEVALVYLYGEEMEALYDALKDQFEI 415

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              H+    + L   +++ L +GD V++KSSN  G   +++ L  E
Sbjct: 416 AALHHYMDKEALIADLKAELKEGDQVLIKSSNGTGLLAVVDALKAE 461


>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
 gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
          Length = 450

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +  +      PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWSLPVEQAPKDF--PVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAEGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFELSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQTLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 460

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 223/468 (47%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++++AI            Q  VNG+  D+R + P + F  + G H DGHDFI +A+
Sbjct: 3   MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +  +D    +  ++IP   VDD L A  KL+     +    +IA+TGS GKTT
Sbjct: 62  KGGAVATLWASDHTNRLP-VAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS          ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ L
Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A+IT I  AH+  F   ++IA AK EI  GL+  G    + D+    LL  ++  
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQ 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      +FG+S   D    K       +  EV L     +V    +G +   N L  + 
Sbjct: 238 VDFSK-MTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +        I+ LS F   +    R           ++ + YN+NP + +  ++  S
Sbjct: 296 VGKLFQIPQIEIIQKLSHFDLTK---NRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
           Q      GRRI VLGDM E+G+ S   H  LA  +    I+ V+L G  + AL + L   
Sbjct: 353 QTD--VMGRRIVVLGDMLELGDKSSQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             P ++H + ++ +D L   ++  +   D V++K+S+      ++  L
Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKL 458


>gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
 gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
          Length = 452

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 218/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +QG   G      V+ ++ D+R +     F A+KG  +D HDF+  A + GA
Sbjct: 5   TLSQLADVLQGELHG--SDLAVDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +  S     +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKLACS-----LPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    KT    G+ NN IGVP+TL R+  + +F + ELG +H GEI +   L RP 
Sbjct: 118 TAAILGQCGKTLYTAGNLNNDIGVPMTLLRLTREHEFAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   LN D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPQDGIAILNADNNDWLNWQS---VIGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +   +DF     +  S  +   ++    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR      A ++    L+D+SYNAN  SM AA  VLS + 
Sbjct: 295 AVGAGLDAVKAGLAKLQAVPGRLFPISLAQHK---LLLDDSYNANVGSMTAAAQVLSDMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G+ S++ H  + E      I  V+  G     +  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGDESEACHRQVGEAAKAAGIDRVFSVGRLSQLIGAA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +      L   +++++ +     ++VK S S     ++  L E
Sbjct: 405 EHFADKAALIARLKTAIEEQQIITILVKGSRSAAMEEVVRALQE 448


>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
 gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
          Length = 453

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 144/468 (30%), Positives = 224/468 (47%), Gaps = 26/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++ +A  G  +G      +  +  DSR + P + F A+KG  +DGHD+    + +
Sbjct: 1   MMYLSEIAKATGGTLVGQ--DVLIQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSE 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++ D+ A+      P   V+D   AL +LA   R +    + AITGS GKT+ K
Sbjct: 59  GATAVLLSHDVGAT------PAVLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVK 112

Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML   L     +     A  G+ NN IG+PLTL R+     + + E+GM+H GEI +LT
Sbjct: 113 EMLAAILRVAAGADDAVLATQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP +A+I     AHL     +E +A AK EIFEGL   G   +N DDSF  L ++ +
Sbjct: 173 RIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEGLADDGVAVINADDSFAGLWQSLA 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G + I  FG +   D     +   S    +++        +     G H  +N L  
Sbjct: 233 ---GRRRIVRFGLNAG-DVTA-GYALHSAGCDLQLSTPAGERALHLPVPGLHNIRNALAA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   +   +D   + L+ F   +GR +R      +    LID++YNANPASM+AAI V
Sbjct: 288 TAVALSMGVSLDAVAEGLAGFAGVKGRLQR---KPGRHGALLIDDTYNANPASMRAAIDV 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G+R+ V+GDM E+GE   + H +L        +  +   G       +A  
Sbjct: 345 LAS----HSGKRLLVVGDMGELGENEAALHAELGAYAKAAGVDALHALGRLSAGAVEAYG 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H  ET++GL   +  +L     V+VK S      R+I+LL ++
Sbjct: 401 PGASHH--ETVEGLAAALLPALDADTTVLVKGSRFMRMERVIDLLQDQ 446


>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 472

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 211/472 (44%), Gaps = 16/472 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  +++QA  G      P    +GI+IDSR+    + F AI G   DGHDF+  A+  G
Sbjct: 7   FTLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGG 66

Query: 65  AGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              +V++     S     +         V D   AL K+A   R     +I AITGS GK
Sbjct: 67  VRGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE+    L++  + +   G++NN IG+P TL  +     + + ELGM+H GEI  LT
Sbjct: 127 TTTKELTAAVLAAKYRVHKSTGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIARLT 186

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P I VIT + P HL     +E + +AK E+ E +    T  LN DD     L  K 
Sbjct: 187 QICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENM-ANKTAVLNLDDKLVSTLADKY 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +     FGK   A  + +  K  +E     + L+ + + V     G  M  N L  
Sbjct: 246 QGETVL----FGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNALAA 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             AL   +P +G   R           LID++YNANPAS  AA+  
Sbjct: 302 AAVGVSAGVSPKEIRDALETVNPVKG---RQNVVSLGNDVQLIDDAYNANPASFAAAVMT 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  ++   +GR I  + DM E+G+ S   H++L  + +   +S +++SG++         
Sbjct: 359 LQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYAGWTAKGAR 418

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                I   + +    +   +  ++   D ++VK SNS G   ++  L +  
Sbjct: 419 EAGMGIDQVFIDEKPNIVTRLAEAVQAKDRILVKGSNSTGMSEVVQGLKDAL 470


>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
          Length = 466

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 212/476 (44%), Gaps = 19/476 (3%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + +  D+L    G   G   P      +  DSR++ P + F A++G  +DGHDF+  AV+
Sbjct: 1   MISLRDVLDGTAGMLRGSAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVR 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V       + +L IP+  VDD L AL +LA   R      + A+TGSVGKT+T
Sbjct: 61  RGAAGALVEARWAEELANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG-MSHLGEIRFLTHL 181
           KE +   L+   +      S+N  +G+ L L  +  + D  + E G    LGE+R L  L
Sbjct: 121 KEAIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGEVRELCAL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I V+T ++ AHL+    IE IA + AE+ E L   G   LN DD    L+  ++ A
Sbjct: 181 AEPRIGVVTNVSYAHLARMGTIERIAQSIAELPESLPADGVAVLNGDDFRVRLMAERTPA 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                +  +G S +   +  + +    +    ++   G+   V    +G H   + L  +
Sbjct: 241 ----RVLLYGLSPDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVHHALAAI 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   ++  +              R          TL+D++YNA+PAS  AA+S+L
Sbjct: 297 AVGYELGLTLEEMLPGFHD----PRVQVRLLTVPGINGATLLDDTYNASPASCMAALSLL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++I      RRIAV GDM E+G   +  H  +    +   +  ++  G     + +A   
Sbjct: 353 AEIPAQ---RRIAVFGDMYELGWYEEEGHRMVGRRAAAV-VDRLFTLGPRARWIAEAAIE 408

Query: 421 S----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           +      V  ++    L   ++ +L  GD V++K +       ++  L       Q
Sbjct: 409 AGLAPERVWATDDRRELVAVLRETLRPGDFVLIKGARGMRMEEIVEALRAAQETEQ 464


>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 223/468 (47%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++++AI            Q  VNG+  D+R + P + F  + G H DGHDFI +A+
Sbjct: 3   MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFIENAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +  +D    +  ++IP   VDD L A  KL+     +    +IA+TGS GKTT
Sbjct: 62  KGGAVATLWASDHTDRLP-VAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS          ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ L
Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A+IT I  AH+  F   ++IA AK EI  GL+  G    + D+    LL  ++  
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQ 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      +FG+S   D    K       +  EV L     +V    +G +   N L  + 
Sbjct: 238 VDFSK-MTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +        I+ LS F   +    R           ++ + YN+NP + +  ++  S
Sbjct: 296 VGKLFQIPQIEIIQKLSHFDLTK---NRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
           Q      GRRI VLGDM E+G+ S   H  LA  +    I+ V+L G  + AL + L   
Sbjct: 353 QTD--VMGRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             P ++H + ++ +D L   ++  +   D V++K+S+      ++  L
Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKL 458


>gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase
           [Clostridium sticklandii DSM 519]
 gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Clostridium sticklandii]
          Length = 457

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 130/471 (27%), Positives = 204/471 (43%), Gaps = 22/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T + +L    G +        +  +  DSR I   + + AIKG ++DG+DFI  A
Sbjct: 1   MIKL-TKNQILSWTSGENNFKDYNPKIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +   A +++ N             V  V+D + AL  +A    ++     +A+TGS GKT
Sbjct: 60  INNKASVILSNRQSSNKE------VITVEDTVIALGSIAKNYLMQFDIKKLAVTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+ML    +    T+   G+YNN IG+PLT   +    +  IFE+GMS LGEI +L  
Sbjct: 114 TTKDMLYYVFNEHFSTHRTDGNYNNEIGLPLTALNIDKGYEAAIFEMGMSALGEIDYLAQ 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP+IA+IT I   H+      E I  AK EI   L     + +N DD +   L    +
Sbjct: 174 IVRPNIAIITNIGSCHIEILKSQENIFKAKMEISNYLNNDDYLIVNGDDKYLTSLSENEY 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +     +G  +    +   +K    QS   V   G +       IG H   N L  +
Sbjct: 234 KFNLIK---YGFGEECQLRASDYKAVDGQSEFWVTGMGINRRFTLPAIGLHNVSNALSAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I     +     L  F P + R +       +     I++SYNANP SM+A I+  
Sbjct: 291 AAGLIYKIPTEKIQAGLMKFQPSKLRMQILE----KNNIKYINDSYNANPESMEAVITSF 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
              +    GR+IA+LGDM E+GE S + H  +  + S      V+  G  +    D    
Sbjct: 347 ESYA---RGRKIAILGDMLELGEFSVAAHERIGRLASE-KFDLVFFIGSQMKHAFDNFST 402

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   ++    +     I+  +  GD +++K S       + + L ++
Sbjct: 403 DENTDKRKYHFIDNNIAIEEIKRIIKYGDTILLKGSRGMKLDEIFSALTDD 453


>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 460

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 217/462 (46%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVVNGEGLQESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  K +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYKVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      +EIA AK EI + L + G    N D+     L ++++   
Sbjct: 187 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDWLRENGLFLYNGDEP----LLSRNNKTS 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG+    D      +        ++      ++      G H   N ++ + + 
Sbjct: 243 SVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHS--KIQYDVPLHGKHNIFNTIVGIAVG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 301 QFYKVPIEKIQEA---LQQINITKMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H
Sbjct: 358 NAYK--KKMIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYH 415

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              +   +    +   +   +   DVV++K S       ++ 
Sbjct: 416 TGKIKSFDNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 457


>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
 gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
          Length = 470

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 215/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         + +G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNIIGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
          Length = 465

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 116/459 (25%), Positives = 198/459 (43%), Gaps = 19/459 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             Q  ++GI+ DSR++ P + +  + G ++DGH+F   ++  GA   +            
Sbjct: 12  DSQIAISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCPVPDELA 71

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             P+  V D L AL +LA A R      I+ ITGS GKTTTK++    L +I + +   G
Sbjct: 72  EAPLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAVLGTIYRVHKTAG 131

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NNHIGVPLT+ ++   ++  + E+GMS  GEI  L+ +  P  A+IT +  AH+    
Sbjct: 132 NLNNHIGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITNVGDAHMLQLG 191

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
               IA AK EI  GL   G +  N D+       A+        +  FG + +  +   
Sbjct: 192 SRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFGAAADCQWSAS 251

Query: 262 KWKQCSEQSWMEVQLQGKSME-------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             +  S+ S  +V     S E       +     G H   N L  + +            
Sbjct: 252 NVQIGSDASAFDVVSPLLSAEEAEQLRGITLPVPGAHNVMNALAAIAVAYRFGVPAAQIR 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                       G R +         +++++YNANP +++AA+ ++++++ +   R+  V
Sbjct: 312 DG---LATVTMTGMRIQPVDAFNGAKILNDAYNANPTAVRAAVDLVAELTGY--RRKWVV 366

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYS 427
           L DM E+G      H  +   ++      V   G     + D       A  R+  V + 
Sbjct: 367 LADMLELGPEEADLHRGIGAYVTPEKADAVLTWGPLAQYIADGAAVAFEAAGRADDVRHF 426

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           E  + L  +++  L   D+V+VK S      +++  L  
Sbjct: 427 EDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVVQALEN 465


>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
 gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
          Length = 450

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L A   
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTATL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T+ +FG   N D       +   Q+   V  +G++        G +   N L+  
Sbjct: 232 ---VQTVTTFGIG-NGDVHAEVTAKGKAQTDFVV--EGETFT--IPLPGSYNVTNALIAY 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I       +    +             R           ++ + YNANP +M   +   
Sbjct: 284 TIGRFFGLSIPEIRQG---LAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLPT--KGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 470

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
 gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
          Length = 470

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes Finland 1988]
          Length = 466

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 13  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 72

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 73  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 130

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 131 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 190

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 191 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 246 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 305 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 362 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 420

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 421 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 464


>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
 gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
          Length = 470

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 227/465 (48%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   ++Q  +G +  +     V GISIDSR+    + FFAI+G  +DGH F+  A+ +GA
Sbjct: 8   TISQVIQ--RGATNPLQELAEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV    V   GS  +    VDDV  AL + A   R +  A +I +TGSVGKTTT+ M
Sbjct: 66  AACVVKRGEVTDPGSQLL--LEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  ALSS         ++NN  GVPL++A +     F + EL  SH+GEIR L  +  P 
Sbjct: 124 IYTALSSCLTGIQSPANFNNEFGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQ 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +HL +F  +++IA  K E+FE L  TG   +  DD F + L +++ A  ++
Sbjct: 184 IGVITAIGHSHLEHFGTLQQIAETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKVR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G  +N D Q    +Q  +     V  Q    + +   +G H     L  + +   
Sbjct: 244 I----GLGENNDLQAVSIEQDQQGISFRVNGQ----QYLLPVVGRHFVNAALAAIAVARE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        ++L  +    GR  + +     G +T+ID++YNA+P SM+AA  VL     
Sbjct: 296 LGISEQDVAESLRNYSTVPGRCHQMQI----GDWTVIDDTYNASPDSMRAACQVLH--DH 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
            G G+RI VLGDM E+G  ++ +H +L  ++    +  ++  G    ++      +   H
Sbjct: 350 VGTGKRIMVLGDMLELGPETERYHRELGILVCQAGVDLLFACGKQATSVAQGARSAGMSH 409

Query: 426 ----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +  ++ L   +   L  GDVV+VK S      RL+  L +
Sbjct: 410 TKIITAADVELLAEDVTDLLEPGDVVLVKGSRGMRMERLLQHLQQ 454


>gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Photorhabdus asymbiotica]
          Length = 459

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 221/476 (46%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T   L Q   G    +        ++  ++ D+R +     F A+KG  +D HDF
Sbjct: 1   MISL-TLQQLAQVTDGVLNQVTERQAIDIYIRDVTTDNRKVENGSLFIALKGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AV+ GAG ++V+      + +++ P   V+D   A+ KLA   R +SKA ++A+TGS
Sbjct: 60  SADAVKAGAGALLVSR-----VLAINCPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G+ NN IGVPLTL R+    +F + ELG SH+GEI 
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLFRLTEQHEFAVVELGASHVGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   +VRP  A++  +  AHL++F  +  IA AK EIF GL + GT  +N + + +   +
Sbjct: 175 YTVEMVRPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLPEKGTAIINVESNDWAYWQ 234

Query: 237 AKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                +G KT+  F   ++  ADF     +     +   +     S E+     G H   
Sbjct: 235 ---QVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVA 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A +      LS      GR      A  +    L+D++YNAN  SM 
Sbjct: 292 NALAASALAISVGATLRDIRLGLSELRAVPGRLFPINLAEGK---LLLDDTYNANVGSMT 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+ VLSQ+     G R+ V+GD+  +GE S+ +H  + E  +   I  V+  G   + +
Sbjct: 349 VAVQVLSQMP----GYRVMVVGDIGALGEQSEDYHRQIGETAASCGIDRVFSVGKLSIHI 404

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
            +A   S    +      L   +   L    V  V+VK S +     +++ L E F
Sbjct: 405 SEA---SGCGQHFADKAALIATLIPLLQQHKVISVLVKGSRNTAMEDVVHALQESF 457


>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 458

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 208/464 (44%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ QA     +  V         +  D+RS+     F A+KG  +DGHDF+L AV 
Sbjct: 4   FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  VVV      +  +L +PVF V D L A   LA   R R    +IA+TGSVGKT+T
Sbjct: 64  KGAAGVVVAA-REETFAALPVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++M+   LS   + +    ++NN IG+P TL  +  + +  + E+GM   G+I  L  + 
Sbjct: 123 RQMIASVLSQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQIAELAAIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V+T +  +H+      E IA AK E+   L  TGT  LN DD     +       
Sbjct: 183 EPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAAMAKLCRG- 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               +  +G S  A  +  + +   +      +   ++       +G H   N L  +  
Sbjct: 242 ---KVIGYGTSVGAAVRAGEIQTDDKGLSFICRCFDQTFRATVPVLGKHHVYNALAAVAT 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L        K L+ +     R +        G +T I+++YNANPASM+ A+  L+ 
Sbjct: 299 ARLLGLSETQMCKGLAAYAGVPMREELVHV----GPYTFINDAYNANPASMEEAVQTLAA 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           +       +IAVLG M E+G+ +   H  L + ++  +I+ +   G     + +A  ++ 
Sbjct: 355 VKKEQ---KIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPASYIAEAAEKAG 411

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V+           ++  L  G VV++K S      +++   
Sbjct: 412 MKAVYQVSDHQAGAAVLRDLLEPGAVVLLKGSRGFTMEKILTYF 455


>gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 459

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 224/472 (47%), Gaps = 26/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               ++ +A+    +   P  +    V  +  DSR + P   F  IKG   DGH FI  A
Sbjct: 3   MQLSEIARALG---VDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +Q GA   +   D   +  +  +P   V+D L AL KLA     +    ++AITGS GKT
Sbjct: 59  IQAGAVATLWAKDHEDTRPA-DLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M    L++         ++NN IGVP+T+  M  + +  + ELGM   G++ FL+ 
Sbjct: 118 TTKDMTAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSE 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IAVIT I  AH+  F   + IA AK EI +GL++ G    + D+    LL  ++ 
Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEP---LLAERAK 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ ++   +FG     D           ++  ++ L    +EV    IG +  +N L  +
Sbjct: 235 AVDVEQ-RTFGMKNENDVFASDVAGTDTETSFKINLD-PEVEVKLPIIGEYNVKNALAAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       V  + +AL+ F+  + R +  +    +    ++ + YN+NP + KA ++  
Sbjct: 293 TVGDRYHVGVADSARALADFNLTKNRTEWLK---GRQGERILSDVYNSNPTAAKAVLNSF 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
           +       GRR  VLGDM E+GE +   H  LA+ L+      V+L G H+ AL   L  
Sbjct: 350 AHTKK--TGRRFVVLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVD 407

Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  ++H++ +  +  L   +Q  +   D V++K+S+     +++  L 
Sbjct: 408 EEIYPAEAVHLYDANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK 459


>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 460

 Score =  366 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 213/449 (47%), Gaps = 15/449 (3%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +     V  ++ DSR + P   F A  G  +DGHDF   A+++GA  VVVN  +      
Sbjct: 19  LTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNHPVPGVPEE 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                    D   A+  +    R +    ++ +TGSVGKTTTK+M   ALS   +T    
Sbjct: 79  ---KAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALSGFGETIKTE 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +G+P TL R+    ++ + E+GMSH GEI  L    RP + +IT I  +H+ N 
Sbjct: 136 GNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNL 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E I  AK EI  GL +   + LNYDD F       +H   ++ ++     +NAD   
Sbjct: 196 GSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAH---VRPVWFSLSDENADVCA 252

Query: 261 RKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              +Q ++     ++ Q   +  V    +G H   N L      + L  D    I+ LS 
Sbjct: 253 LSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAKRVIRGLSN 312

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F      G+R +   ++G  T+I++ YNANP SMKAA+++          RR A+LGDM 
Sbjct: 313 FEQT---GRRQKVVDSEG-VTVIEDCYNANPDSMKAALAMFKDFP---CKRRFALLGDML 365

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQ 438
           E+GELS+  H +L  + +   +  +   G         A  + +   ++++       + 
Sbjct: 366 ELGELSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGVETLHADSYREAADALL 425

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S +  GD ++VK+S+     +++++  EE
Sbjct: 426 SRVQPGDAILVKASHGMALEKVLDIFYEE 454


>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
 gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
          Length = 455

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 218/465 (46%), Gaps = 15/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F ++++AI G           N +S D+R I     F A+KG +++ +++I+ A +K
Sbjct: 3   LLKFEEIVEAIHGKIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEASKK 62

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L +V+           +  V  V++   AL  LA   R +    II ITGS GKT+T
Sbjct: 63  GANLCIVDEIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   AL S  K +   G++NN IG+PL +  +   +D  + E+GMS   EI  L  + 
Sbjct: 123 KDLTAAALGSKFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGMSDFSEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IA+IT I  +H+ N    E I  AK EI +   K   + +N ++   + + +  +  
Sbjct: 183 RPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNENDLLKDISSNDY-- 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I + G ++   ++              V    ++ +      G H   N L+ +  
Sbjct: 241 ---NIINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGKHNILNSLLAIAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  + D     +        R    +       FT++D+ YNA+P SM+AAI V++ 
Sbjct: 298 GRVLNIEYDKLKDGIKNLSVTSMRLDIVK----GEKFTIVDDCYNASPDSMRAAIDVMNT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      R+IAVLG M E+G  S  FH ++AE     N+  +   G    A K+   ++ 
Sbjct: 354 IK---GKRKIAVLGTMKELGVDSYKFHKEVAEYADSKNVDLLITVGEFNEAYKEGFNKTS 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ET++    FI +++   D+V+VK+S S  F  ++N L ++
Sbjct: 411 K--QFETIEDAAEFITNNINKDDIVLVKASRSMKFEYIVNKLKDK 453


>gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
 gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 135/474 (28%), Positives = 210/474 (44%), Gaps = 22/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL T   L +   G       Q      +N + IDSR +     F A+KG  +D HDF
Sbjct: 1   MIPL-TLKQLTKLTGGVLYHTSEQQAATCQINTVEIDSRKMVRGGLFIALKGEKFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +    ++GAG ++VN  +      +  P   V++   A+ KLA   R +SKA I+A+TGS
Sbjct: 60  VADVAKQGAGALLVNRRL-----EIDCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G++NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTAAILCQRGHTLYTAGNFNNDIGVPLTLFRLTEEHQFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   +  P  A++  +  AHL  F  +  +A AK EIF GL   GT  +N D + +   +
Sbjct: 175 YTAEMTCPESALVNNLFAAHLEGFGSLAGVAKAKGEIFAGLSSAGTAIINLDSNDWTHWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      ++      ADF     ++    +   +     ++EV     G H   N 
Sbjct: 235 QGMSEPQAVWRFAVSPVPEADFYATDIQEQPLATSFCLHTPIGNIEVTLPLPGKHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L    P  GR    R A  +    ++D++YNAN  SM AA
Sbjct: 295 LAASALAISVGASLSDIRAGLLELKPVSGRLFPIRLAEGK---IVLDDTYNANIGSMIAA 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            + LSQ+     G  + V+GDM E+G+ +   H  + E L+   I  +   G     + +
Sbjct: 352 ANTLSQMP----GYHVMVVGDMGELGDQTVECHRQVGEALASTKIDKIMSVGEFSSHISE 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
               S    +      L   +   L   ++  +++K S S     ++N L E F
Sbjct: 408 ---TSGRGQHFANKAELVAALLPLLEQHEMISILIKGSRSAAMEEVVNTLKENF 458


>gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895]
          Length = 452

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 216/464 (46%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF  +A + GA
Sbjct: 5   TLSQLAGILHGELQGA--DLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +        +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPLDCD-----LPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL   G   +N D++ +   +     +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPVNGIAIMNADNNDWLNWQGI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q     ++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGDIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    +   NQ    L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLDAIKTGLANLKAVPGRLFPIQLNDNQ---LLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+ +A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDSVLSTGKLSQAIGNA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +      L   + + + +     ++VK S S     ++  L E
Sbjct: 405 EHFADKSALVARLNTLIAEHQIITILVKGSRSAAMEEVVRALQE 448


>gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes FSL R2-561]
          Length = 470

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 469

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 217/467 (46%), Gaps = 16/467 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +++QA QG  +     G  +  I IDSR   P   F AI G   DGH F+  A Q+G 
Sbjct: 6   VEEVVQATQGQLVCQGMDGGEITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQEGC 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V+ +   +       +  VD+    L  +A   R       + ITGSVGKTTT++M
Sbjct: 66  RFFLVSNESYITDRFKDSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTRDM 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+S   T     +YNN  GVPLTL R+       + E+GMS  GEI +L ++VRP 
Sbjct: 126 VYSVLASKFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEIEYLANIVRPK 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT I  +H+ +    E I  AK EI  G ++T ++ +N DDS+      +       
Sbjct: 186 IGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERYRNSQKD 245

Query: 246 --TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +YSFG     D   +  +    +++      + ++ E     +G H  +N +  +  
Sbjct: 246 SYKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAAILA 305

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I    ++   K L  F   E R    +       FTLI++ YNA+P SM AA+ VL  
Sbjct: 306 GHITGMTMEEISKGLLDFVATENRQDIIKT----DRFTLINDVYNASPDSMIAALKVLK- 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRS 421
              + + RR+A+LGD  EMG+ ++  H  +    S+     +  +G     +  +A+ R 
Sbjct: 361 --LYKDRRRVAILGDCLEMGQYAEEGHRRVG-YQSIDKADIIITAGHAAKFIGVEAMERG 417

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                V + ET + L   +   + DGDV+++K+S    F  ++ +L 
Sbjct: 418 FDLSRVFHFETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVLK 464


>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes L99]
          Length = 470

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + + +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLAEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 179/470 (38%), Positives = 259/470 (55%), Gaps = 17/470 (3%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN PLWT  D+  A  G +        V G ISID+R++   + F A+K    DGHDF+ 
Sbjct: 1   MNRPLWTSSDMELATGGDASAAFE---VTGSISIDTRTLQKGDLFVALKDQR-DGHDFVE 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + GA   +V+  M         PV  V+DVL AL ++ +AAR+R  A   A+TGS G
Sbjct: 57  AAFKAGAAGALVSRPMPGG------PVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+ KEML     +    +  + S+NNH GVPLTLARMP +    +FE+GM+  GEI   
Sbjct: 111 KTSVKEMLAQIYRAHGPAHWNVKSFNNHWGVPLTLARMPEETQRAVFEIGMNTPGEIAPR 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +VRPH  ++T IA AHL     +E IA  KA IF GLE  GTI L  DD+F + L  +
Sbjct: 171 SQMVRPHTGIVTCIAAAHLQGLGSVEGIAEEKANIFAGLESGGTIILPADDTFLDYLSER 230

Query: 239 SHAL-GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +      + +FG S +A  ++  ++     S +EV + G+ + V  + +G H AQN+ 
Sbjct: 231 ARSFCPTGNVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVA 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
             L   S  +  V    +ALS + P  GRG      L   G  TLID++YNANPASM+AA
Sbjct: 291 AALLAASQASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASMRAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L+Q +     RR+A LGDM E+G+ S + H  LA  +    +  V+L G  +  L +
Sbjct: 351 LKGLAQRA---GTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFLVGAEMQHLSE 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ALPR +    + T D L+  +Q +L  GDV+++K SN+ G  R+ + L +
Sbjct: 408 ALPRDLQQVSAPTADELWNQLQKALRAGDVLLIKGSNASGMGRIADRLRQ 457


>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 460

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 217/465 (46%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGHD++  A+  
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--VPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++++   
Sbjct: 187 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKTS 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG+    D      +        ++      ++      G H   N ++ + + 
Sbjct: 243 SVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNH--TKIQYDVPLHGKHNIFNTIVGIAVG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 301 QFSKVPTEKIQEA---LQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H
Sbjct: 358 NAYK--KKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYH 415

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 416 IGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIVQKWM 460


>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 460

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 129/442 (29%), Positives = 208/442 (47%), Gaps = 18/442 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
               +  DSR+I P   F A+KG  +DGH F+  A++ GA   VV+           +  
Sbjct: 22  EFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVSEVPEGVAADRCV-- 79

Query: 86  FGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             V D L A  ++A   RL  K  T+IAITGS GKT+TK+ +   L    +      ++N
Sbjct: 80  -VVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGERYRVIKTQANFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+P TL  +  D +  + E+GM  LG+IR + H+  P  AVIT +   HL     +E
Sbjct: 139 NEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSLE 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+EI E        FLN DD    +++  +       ++++G   +AD +  +  
Sbjct: 199 NIAKAKSEILEDFTPKNHAFLNGDDPRVSVMETGAA------VHTYGIDSDADVKAVEIS 252

Query: 265 QCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++      ++ G + +V    IG H   N L  + +  +         + L     
Sbjct: 253 ADGLRTVFTYRSRITGATQKVQLPLIGRHNVMNALAAVAVGEVYGVPDAAIARGLENLKM 312

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEM 381
              R +        G  T+I+++YNA+PASM+AA+  L   +   G+GR IAVL DM E+
Sbjct: 313 TGMRQEILHF----GPVTVINDAYNASPASMEAALRTLGDVVKSQGKGRAIAVLADMLEL 368

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G  SQS H  +    S Y ++ +   G     + +A  +  + VHY++        +   
Sbjct: 369 GAHSQSGHAQVGTWCSQYGVTELVCYGPESRFMAEAAQKAGVPVHYAQDRGEAARVLARL 428

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
           +   DVV++K S+    ++LI+
Sbjct: 429 VRPDDVVLLKGSHGMEVFKLID 450


>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
          Length = 469

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 140/472 (29%), Positives = 223/472 (47%), Gaps = 28/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  D+ Q + G   G      +  +S D+R I+    F A+ GP+++GH F   A
Sbjct: 1   MINL-SLIDIAQQVNGTLQGN--DLIITNVSTDTREISADSLFIALVGPNFNGHVFANEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            Q GA  ++ +  +        +PV  V+D   AL  L    + +     + ITGS GKT
Sbjct: 58  RQNGAVAMIASEPV-----EAHMPVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM T  L       +  G++NN IGVPLTL R+  + ++ + E+G +H+GEI + T 
Sbjct: 113 TVKEMTTAILKECGSVLSTQGNFNNDIGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A I   A +HL  F  +  +A AK+EIF+GL K+GT  LNYD  F++    K  
Sbjct: 173 LVKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKGLSKSGTAILNYDSQFYDFWLGK-- 230

Query: 241 ALGIKTIYSFGKS----KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
            L  + IYSF  +    K AD+   +        +   +      M +     G H   N
Sbjct: 231 -LDNELIYSFSLNSAPGKGADYSASQVGLAFNGCAHFIMHTPIGEMNIELTLPGIHNVGN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+   +   + A ++     L+     +GR +  + +       L+D+SYNAN AS+ A
Sbjct: 290 ALLAAALSINVGASLENVRDGLAKIQHVKGRLEVKQLSEK---VRLLDDSYNANVASVTA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI +LS      EGRR+ VLGDM E+G+ ++ +H  + E+    +I   +  G    +  
Sbjct: 347 AIKLLSS----YEGRRVLVLGDMAELGDQARHYHEQVGELAKSESIEMFYTLGELSKSAS 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLL 464
           D         +   ++ L   +   L   D    ++VK S S    R++  +
Sbjct: 403 DMFGEG--GQHFSHIEPLLDALYKELYANDNEFTILVKGSRSSRMDRVVTAI 452


>gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 169/443 (38%), Positives = 237/443 (53%), Gaps = 10/443 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+R+IAP + F A+     DGHDF+  A+ KGAG  +V+           +
Sbjct: 20  DWQVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSRIPEGVGEDGRL 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VDDV   L  L  A R R++A ++A+TGSVGKT+TKEML   L +  +T+A + SY
Sbjct: 79  --LLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+A  HL  F  +
Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFDDV 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA  KA I EGLE  G   LN D +  ++L+A +         SFG++   D++L   
Sbjct: 197 AGIAREKAAIMEGLEPGGVAVLNADIAEADILRAAARGA---RQLSFGRAAQ-DYRLTGV 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +     +          +       G H A N L  L     L AD   +++ L  + P 
Sbjct: 253 EVADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALGADAGQSLQGLERWTPY 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GRG R   +L  G  TL D+SYNANP S+ AA+ VL+        RR+A LGDM E+G 
Sbjct: 313 KGRGARETISLAGGPVTLFDDSYNANPTSVGAALEVLAGTP---GTRRVAFLGDMKELGP 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                H  LA + ++  +  V   G  + AL DALP +    ++ET   +   + + +  
Sbjct: 370 EELPLHAGLAALPAMERVDQVHCIGPLMRALFDALPEAKRGRWTETGAEMLAELPALVAP 429

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD V+VK S S G  RL++ L E
Sbjct: 430 GDAVLVKGSLSMGLARLVDGLRE 452


>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 465

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 202/464 (43%), Gaps = 20/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++  AI G+ +   P   V G+S DSR I P  AF A+KG  +DGHDFI  A+  GA
Sbjct: 5   TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGAALSGGA 64

Query: 66  GLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
              +  +     +  L     +  VDD L AL KLA   R +  K  +I +TGS GKTTT
Sbjct: 65  AAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIGVTGSSGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ++   LS + K     G++NN IG+P+TL R+       + E+ M   GEI  L  + 
Sbjct: 125 KNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGKGEIASLAAIA 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I   HL     I  IA+AK E+   L   G   LN D+ +   L A     
Sbjct: 185 RPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWCRRLAATCPC- 243

Query: 243 GIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +  F      +   R    +  E ++      GK + V     G H  ++ L  L 
Sbjct: 244 ---RVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRHNVEDALAALA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  + +T  ++            R       G   + +++YNANP SM+AA+  L 
Sbjct: 301 VGFSLGVEPETMARS---LADWPAEDLRQDLRPGPGGSLVFNDAYNANPESMEAALQALG 357

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DA 417
            +     GRR+AVLG M E+G      H  +    +   +  +   G     +     +A
Sbjct: 358 ALP----GRRVAVLGAMLELGPAEVELHRRVGRFAAARGLYRLITVGELAGEIAAGALEA 413

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              +  V    T +     ++  L  GDVV+ K S   G  +++
Sbjct: 414 GMPADQVFACLTHEEAAGHLRG-LGHGDVVLFKGSRLTGMEKVL 456


>gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 464

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 176/464 (37%), Positives = 245/464 (52%), Gaps = 12/464 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A              +G+SID+R++ P + F A+K    DGHDF+  A++K
Sbjct: 3   LWTASEAAAA---TGGQATIDWQASGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V             P+  VDDV  AL  L  AAR R KA ++ +TGSVGKT+TK
Sbjct: 59  GAAAALVTHIPDDVAAD--APLLIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L    R
Sbjct: 117 EMLATILSDQGRTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLARQAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+A  HL  F  +  IA  KA IFEGLE  GT  +N D    ++L+  +   G
Sbjct: 177 PHVALVTTVAAVHLEAFESVAGIAHEKAAIFEGLEAGGTAIVNADLDHTDILRTCAARHG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I  FG++  +D++L    Q      +  +  G+ +       G H A N L  L   
Sbjct: 237 A-VIVDFGRTA-SDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGALAAC 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQ 362
             L  D+D AI  L+ + P  GRG R R AL  G    L+D+SYNANP SM AA+     
Sbjct: 295 VALGVDLDAAIAGLAKWAPVTGRGVRERLALPDGGQIELLDDSYNANPTSMAAAL---DV 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++     RRIA LGDM E+G   ++ H  LA+V ++  I  V   G  + AL +ALP   
Sbjct: 352 LAAAQGARRIAFLGDMKELGPQERAMHAGLADVPAMARIDKVHCIGPLMRALHEALPEDK 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + ET D +   +   +  GD V+ K S S    R+++ L +
Sbjct: 412 RGLWFETSDEMARHLPGLVQAGDAVLAKGSLSMALARIVDGLRK 455


>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
 gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
          Length = 470

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  +L DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGKP-KYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
 gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
          Length = 470

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 217/471 (46%), Gaps = 21/471 (4%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G   G   PQ  +N +S D+R       F A+KG  +D HDFI  A+ +G
Sbjct: 5   SLAWVAMAVNGQLRGASNPQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+    +         P   V+D   AL  L  A +       IAITGS GKTT KE
Sbjct: 65  AIAVITQQPLDEQT-----PHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   +       A  G++NN IGVPLTL R+     + + ELG +H GEI + T L RP
Sbjct: 120 MLAAIIGQQYNVLATAGNFNNDIGVPLTLLRLEAQHQYAVVELGANHAGEIAYTTSLTRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  ++ AH+  F  +  +A AK EIF+GL + G     Y+  +    +   +    
Sbjct: 180 DVAILNNVSAAHVEGFGSVHGVAKAKTEIFQGLPEDGLAITPYESEYLPCWR---NVRAG 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           K + +FG S+ AD +  + +  S      ++ +  +   V     G H  +N L      
Sbjct: 237 KRLQTFGLSEQADVRASQIELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALAASAAA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +     L+   P +GR    +   N    T+ID++YNA+ AS KAA+ +L   
Sbjct: 297 LEVGMSAEEIATGLANVAPVKGRLTPMQLTEN---VTVIDDTYNASVASTKAALDLLGS- 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +G  I VLGDM E+G  ++++H D+ +      IS  +  G    +  +       
Sbjct: 353 ---YQGTTIMVLGDMAELGAEARAYHEDVGDHAIQAGISKFFTLGVLSQSASEVFNGRGG 409

Query: 424 VH---YSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            H   ++  +D +   I Q S+ +   V+VK S S    R++N L E + +
Sbjct: 410 KHFSSFATLVDEILQTITQRSVSEHVTVLVKGSRSSHMERVVNALQEHYKS 460


>gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103]
 gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103]
          Length = 452

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 218/470 (46%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F AI G  +D HDF   A
Sbjct: 1   MIPV-SLSTLAEIASGTLHGD--DLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  ++V+  +  S     +P   V D   A  KLA   R ++ A ++A+TGS GKT
Sbjct: 58  IAKGAKALLVSKHLPVS-----VPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTASILRQCGETLHTAGNLNNDFGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +E +A AK EIF GL   GT  LN D + +   +   H
Sbjct: 173 LVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGLPARGTAILNADSNDWPRWQENLH 232

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               KT++ F  ++ + DF     +   + +   ++      +++    G H   N L  
Sbjct: 233 G---KTVWRFSPQAADCDFGAHDIRIRQDGTHFVMRTPRGEADIILPLPGRHNIANALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L       GR    R + +Q    ++D+SYNAN  SM AA  V
Sbjct: 290 AALALSVDAPLSAVQAGLKSLQSVPGRLFPVRLSEHQ---LILDDSYNANVGSMVAAAQV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS++     G R+ V+GDM E+G+ S+ FH ++        +  V  +G     L ++  
Sbjct: 347 LSEMP----GYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLSTGQFSHFLSES-- 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            S    +      L   ++  L +     V++K S S    +++  L E+
Sbjct: 401 -SGVGEHFSDKTALTERLRQLLSEHQEMTVLIKGSRSAAMEQVVQSLQEK 449


>gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Halanaerobium
           praevalens DSM 2228]
          Length = 465

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 211/468 (45%), Gaps = 17/468 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +++   +   +       V  I IDSR +     F AI G + DGH ++  AV+ GA 
Sbjct: 6   LKEIVAFTKAELLQGNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEAVKNGAS 65

Query: 67  LVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKE 124
            V+V+ +         ++ V  V+D   AL  +A   R +     +I ITGS GKTTTK+
Sbjct: 66  AVIVDRNSPAIQAAYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAGKTTTKD 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS         G+YNN IG+PLTL R+    DF I E+GMS L EI  L  +  P
Sbjct: 126 MIFSVLSEKYYCLKTEGNYNNQIGLPLTLLRLDGREDFAILEMGMSGLAEIDLLAKIAVP 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT IA AHL     +E IA AK E+ + L    T  LNYD+ + + +   S A   
Sbjct: 186 EIGIITNIAAAHLEQLGSLENIAQAKKELIDNLTAADTAILNYDNQYTKKIGTNSKA--- 242

Query: 245 KTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +TIY FG  K AD ++    +   +E    E   Q K+ + + +  G H   N+L  L I
Sbjct: 243 QTIY-FGFEKGADARIENYFFNSKTETLKFEFTYQAKNYKFIFNKAGKHNLYNILPALII 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   K        +    R      +    +I++ YNANP S+KAA+ VL Q
Sbjct: 302 AFKYKLKPEEIQKG---LLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALDVLEQ 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
           I      R+IA+L  M E+GE S   H  +    +   I  +   G    A+        
Sbjct: 359 IKAK---RKIAILASMLELGEKSLKKHQQIGLYAAAKKIDLLITIGPKAQAIATKARTKM 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +S  V           F+ S +   D++++K S +     +++ L  +
Sbjct: 416 KSEQVINLANNKECIDFLLSEIKAEDLILIKGSRANKLEEIVDELKSK 463


>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 461

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 220/467 (47%), Gaps = 20/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D++QA    +        +N I  DSR +A    F  + G   DGH FI+ A  +G
Sbjct: 6   WEIADVVQATN--NWKQWSDFTINTIEFDSRQLASGSLFIPLGG-KTDGHQFIMDARSQG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + + +   S+     P+  V D L A+  LA+    +    +IA+TGS GKTTTK+
Sbjct: 63  AKAALWSKES--SLAPEGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+    TY   G+YNN IG+P T+  MP + +  + E+GM H  EI FL+ L  P
Sbjct: 121 MIAAVLAKKYITYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHADEIDFLSQLASP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  AH+ N    +EIA AK  I +GL + G + +  ++   + L A S     
Sbjct: 181 TVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLIIPENEPLLKPLTANS----T 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +TI +FG +  ADF   +  Q  E++    +L G  +       G +   N  + L I  
Sbjct: 237 QTIKTFGFTNEADF--VECVQLEEKNKTTFKLSGYQLPFTIPVPGKYNVDNACIALIIGK 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     + L+  H  +    R           ++ + YNANP ++   +    Q+ 
Sbjct: 295 WFQVPEKEMQQTLAEVHLTK---NRTEWVTANNGVEILSDVYNANPTAVSLVLDSFGQM- 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
               GRRI VLGDM E+G  S+  H  L++ L    I  V+L G  +  L   L +    
Sbjct: 351 -FTNGRRIVVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEMKNLFLILEKTYGN 409

Query: 423 HVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           HVHY   M+   L ++++++L   D+++VK SN      +I  L ++
Sbjct: 410 HVHYYPKMEKEHLIVYLKATLQPNDLLLVKGSNGMRLTEVIEALTKK 456


>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
 gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
          Length = 449

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 156/460 (33%), Positives = 244/460 (53%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L +A+   +I I      N +  +S+ +   + F  ++G   DGHD++L A+ K
Sbjct: 2   IWNSETLSKAL---AITISNSINCNEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  +       +  VDD    L K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIVSKQVEINDKD---KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L I L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKILLQYDSLVFASRGNFNNRLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIFE   K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADINCYNKIVSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  +Y+FG S N   QL  ++   EQ  ++ ++  KS+E+    I  H A+N    L I+
Sbjct: 235 INRVYNFGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANIPPNKGRGE----IINIQNSRIICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H +L   +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPPKIV 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFESNELILIKGSRGIKLDKIVDY 447


>gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 10403S]
          Length = 457

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 453

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 197/446 (44%), Gaps = 16/446 (3%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           + +     ++ +  DSR + P   F    G   DGH F   A Q GA  ++ N  +    
Sbjct: 13  LTLAEPVSIHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVP 72

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              ++    V D   A+ ++A   R+     II +TGSVGKTTTKE     LS+   T  
Sbjct: 73  ADRTV---VVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFGNTLK 129

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ NN IGVP TL R+    ++ + E+GM H GEI  LT  VRP   +IT I  +HL 
Sbjct: 130 TEGNQNNEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLE 189

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           N    E I  AK EI  GL     + LN D+     L   +   G      FG  + AD 
Sbjct: 190 NLGTRENILKAKMEICAGLPDGAPLVLNADND----LLPTAQVPGRLRAVWFGIEQEADV 245

Query: 259 QLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +    +  ++ +    V  +     V     G H   + L      + L  D     KAL
Sbjct: 246 RAENIQTGAQGTTFTLVDREYGRFPVSIPTAGLHTVYDALSAYAAATRLGLDPANCAKAL 305

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S +     R         +G  T+I++ YNA+P SMKAAISVL  +      R+IA+LGD
Sbjct: 306 SRYQTTGMRQHIVE----RGGVTVIEDCYNASPDSMKAAISVLKALP---NKRKIALLGD 358

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLF 436
           M E+G+ S+  H    E ++   +  +   G     + +A   R +   + +    +   
Sbjct: 359 MLELGDASEEGHRHTGEWVAEAGVDTLIAYGPRSAVMAEAAQARGVTTVHCQKAQEVLQC 418

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +Q  +  GD ++ K+S++     L+ 
Sbjct: 419 LQQFVQPGDALLAKASHAMKLEDLLQ 444


>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes LO28]
          Length = 447

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 208/445 (46%), Gaps = 15/445 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  D+R I   + F    G   DGH+F+  A + GA       ++         
Sbjct: 13  DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPTDF-- 70

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++
Sbjct: 71  PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      
Sbjct: 131 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           EEIA AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + 
Sbjct: 191 EEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEI 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +E +      +   +E+    IG H   N +  +     +  + +    AL      
Sbjct: 246 RAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERS 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R      +    +++++YN++P ++K  +     +   G+  +  VL DM E+G+
Sbjct: 305 KS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKP-KYLVLADMLELGD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 361 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 420

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 421 IKGNEWILVKGSYGMGLKDVVENLI 445


>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 205/466 (43%), Gaps = 11/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  D+L+A   H  G         IS D+RS+ P   F A++G  +D HDF+  A
Sbjct: 52  MAARFSDADVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQA 111

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG  VV             P++ V D L AL  LA   R R +  + A+ GS GKT
Sbjct: 112 HAGGAGGAVVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKT 171

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L++        G+ NN +GVPLTL R+       + E GM+  GEI  LT 
Sbjct: 172 TTKEMVGAILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTR 231

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   +IT + P HL     +E +A A+ E+F  L       +N DD       AK  
Sbjct: 232 VIQPQAGLITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAK-- 289

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G     +FG++++AD +L + +    E   + V+ QG+   V  H IG H A N    
Sbjct: 290 --GRGKRLTFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGA 347

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L    +  ++            +R          T++D+ YNANPASM AA+  
Sbjct: 348 FALALALGYSPEECVRG---LESARPYARRLNVVDGLHGVTVVDDCYNANPASMDAALDT 404

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR +AVLGDM E+G      H  L    +      V   G        A  
Sbjct: 405 LRTL-VTAGGRAVAVLGDMLELGPGELEEHAALGTRAAGR-AQLVAFFGPRSEKGFQAAS 462

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +   +  L  ++   L  GDVV+VK+S      R++  L
Sbjct: 463 GLGDATAHFTEVGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 508


>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 460

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 213/449 (47%), Gaps = 15/449 (3%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +     V  ++ DSR + P   F A  G  +DGHDF   A+++GA  VVVN  +      
Sbjct: 19  LTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNHPVPGVPEE 78

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                    D   A+  +    R +    ++ +TGSVGKTTTK+M   ALS   +T    
Sbjct: 79  ---KAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALSGFGETIKTE 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +G+P TL R+    ++ + E+GMSH GEI  L    RP + +IT I  +H+ N 
Sbjct: 136 GNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNL 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E I  AK EI  GL +   + LNYDD F       +H   ++ ++     +NAD   
Sbjct: 196 GSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAH---VRPVWFSLSDENADVCA 252

Query: 261 RKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              +Q ++     ++ Q   +  V    +G H   N L      + L  D    I+ LS 
Sbjct: 253 LSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAKRVIRGLSN 312

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F      G+R +   ++G  T+I++ YNANP SMKAA+++          RR A+LGDM 
Sbjct: 313 FEQT---GRRQKVVDSEG-VTVIEDCYNANPDSMKAALAMFKDFP---CKRRFALLGDML 365

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQ 438
           E+GELS+  H +L  + +   +  +   G         A  + +   ++++       + 
Sbjct: 366 ELGELSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGVETLHADSYREAADALL 425

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S +  GD ++VK+S+     +++++  EE
Sbjct: 426 SRVQPGDAILVKASHGMALEKVLDIFYEE 454


>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
 gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
          Length = 452

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 214/463 (46%), Gaps = 17/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF+++ +A+ G  I    +   N +SID+R ++    F AI G +++G+ FI +AVQKG
Sbjct: 1   MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 60

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A L +V+            I +  V+D   AL  LA   R      ++AITGS GKT+TK
Sbjct: 61  AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L S  + +   G++NN IG+PL + ++    +  + E+GM+H  EI  +    R
Sbjct: 121 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    E I  AK EI +   K   + +N D+        K H   
Sbjct: 181 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL-----KKHEFK 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +     +K  +            S  EV  QG+ +  V +  G H  +N ++++   
Sbjct: 236 SINVLKTSLNKEGNLNAENLCLHEGNSEFEV--QGEKL--VLNMPGKHNIENAMLSIAAA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K L        R       +N     ++D+SYNA+P SM AAI V   +
Sbjct: 292 LKLGLTFEEIRKGLKDLELTAMRLD----IVNGENIVIVDDSYNASPDSMIAAIDVTKNL 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +   RRIAVLG M E+GE S   H ++       NI  + + G    A  D      +
Sbjct: 348 KGN---RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               ET + L  F+++ +  GD+ ++K+S    F  ++  L E
Sbjct: 405 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 447


>gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Asticcacaulis excentricus CB 48]
 gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Asticcacaulis excentricus CB 48]
          Length = 462

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 175/469 (37%), Positives = 249/469 (53%), Gaps = 12/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PLWT  +LL+A  G   G+          GI+ DSR + P + F A+ G   DGHDF+
Sbjct: 1   MTPLWTGTELLKATGGTFAGLSGDASALHATGITFDSRQVQPGDIFLALSGVR-DGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A  +GA   +    +         P   V DVL AL KL   AR R+ A   A+TGSV
Sbjct: 60  GQAFAQGAVCALTRKPVDGG------PCLMVPDVLKALEKLGAYARDRAPAMRGAVTGSV 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+  +M+  ALS   + ++ + S+NNHIGVPLTLARMP D +  +FE+GM+H  EI  
Sbjct: 114 GKTSVTQMVMAALSRAGRAHSAVKSFNNHIGVPLTLARMPADTERAVFEIGMNHANEITP 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L+ LV P   +ITT+   H  NF  G E +  AKAEIF+GL+  G   LN D+ +F  L 
Sbjct: 174 LSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGGLAILNADNHWFAELN 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++  +G K +  FG+++ AD  L   +    ++ +   L G+ +       G H A N 
Sbjct: 234 ERASEMGAK-VQCFGEAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   L  D  T + ALS F   +GRG  ++ A+  G  TLIDESYNANP SM A 
Sbjct: 293 LSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVAT 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++ L+       GRRIAV+ DM E+G      H  LA  L+   +  V+++G  + AL D
Sbjct: 353 LNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVDQVFVAGPLMRALWD 412

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            LP ++   Y+ T   L   ++++L   D+V++K SN      +   LL
Sbjct: 413 VLPEALRGAYAATAAELLEPLKTALRPNDIVMIKGSNGSKAGLIAKSLL 461


>gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 452

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 219/469 (46%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T       +QG   G      ++ ++ D+R +     F A+KG  +D HDF   A
Sbjct: 1   MISL-TLGKAATLLQGTLHGQ--DLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++VN  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KENGAGALLVNRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + DF + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +E +A AK EI+ GL   G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGLPDNGIAIMNADNNDWLNWQSI-- 230

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +G +  + F  +  ++DF        S  +   +      +EV+    G H   N L  
Sbjct: 231 -IGSRKTWRFSPNAADSDFTATHIHVTSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A  D     L+      GR    + A N+    L+D+SYNAN  SM AA+ V
Sbjct: 290 AALSMAVGATHDAIKTGLANLKAVPGRLFPVQLAENK---LLLDDSYNANVGSMTAAVQV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS++     G R+ V+GDM E+G+ S++ HI + E      +  V  +G    A+  A  
Sbjct: 347 LSEMP----GYRVMVVGDMAELGDESEACHIQVGEAAKAAGLDCVLSAGKLSQAISHA-- 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            S    +      L   +++ + +     V+VK S S     +++ L E
Sbjct: 401 -SGVGEHFADKAALIERLKTLIAEKQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 454

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 215/463 (46%), Gaps = 13/463 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A+ G  I     G  N IS D+R I     F A+KG +++G+ + + A++KGA
Sbjct: 4   NIQEVIEAVNGEIIVKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKGA 63

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            +V+V+              V  V D   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 64  SVVIVDEIKFEKEDLKSKGTVIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTSTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +  D D  + E+G S+ GEI  L  +  P
Sbjct: 124 LIAAFLSGKYKVFKTQGNFNNEIGLPLMIFELNKDYDVAVLEMGTSNFGEINTLAGIALP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA IT +  AH+      E I   K  I +  +    + +N ++   + +K + H    
Sbjct: 184 DIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDDSCLVINCENDMLKTVKDEDHK--N 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  K+ +   +  +  SE +  +   + +      + +G H   N L+ + I  
Sbjct: 242 INIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNALLGIQISK 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   K L  F     R +  +       FT+I++SYNANP SMKAAI+VL   +
Sbjct: 302 DLGLKFEEMEKGLDNFKATSMRLEFIK----HNKFTIINDSYNANPDSMKAAINVLKSYT 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R+IAVLG M E+G+ +   H ++ E         +  +G +  + K+      + 
Sbjct: 358 ---GDRKIAVLGTMGELGDYANIAHKEVGEFA-KGKADILLTTGEYKDSYKEGF--GTNT 411

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +T D L   + S + D D ++VK+S S  F  +I  +  +
Sbjct: 412 LVFDTKDDLIKSLNSMIKDEDTILVKASRSAKFEEIIKEIQNK 454


>gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
 gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
          Length = 457

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 455

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 217/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   S     Q  +  +S DSRS+     F  +   + DGH+F+  A Q G
Sbjct: 3   MQLSEVARALGIESEDQYDQITITSVSFDSRSLEQGALFVPLIASN-DGHEFVEAAKQNG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D         IP+  VDD L AL K+      +    ++AITGS GKTTTK+
Sbjct: 62  ACAALWQKDH--ENRPQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKD 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+         ++NNHIGVP+T+  M  + +  + E+GM H GE+  L HL+ P
Sbjct: 120 MIAAVLSTQFNVAKTHDNFNNHIGVPMTVLSMEPNTEILVVEIGMDHFGELDHLVHLLDP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   + IA AK EI   L++ G +  N D+    LL  ++  L  
Sbjct: 180 DVAVITMIGEAHIEFFKTRDRIADAKMEITHALKEDGLLVYNGDEP---LLIERAEKLDF 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T  +FG   N D Q +     +E++   V+ Q   +      IG +  +N L  L + S
Sbjct: 237 ET-KTFGTGANVDLQAQNIVSDAEKTSFRVK-QWPELNFTIPMIGAYNVKNALAALCVGS 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D  + +KAL  F     R +  + +       ++ + YN+NP +    ++     +
Sbjct: 295 EFQIDPRSMVKALEHFDLTRNRTEWVKAS---NGADILSDVYNSNPTACAEVLTAFQ--N 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
               GRR AVLGDM E+GE     H  LA+ +    +  V+L G  +  L +AL      
Sbjct: 350 AETTGRRYAVLGDMLELGEQGPKMHAGLADKIDPKKVDEVFLCGPLMKNLAEALTDKFDQ 409

Query: 423 -HVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +H+  T   + L   ++  L   D+V++K S+      ++  L 
Sbjct: 410 GKIHHYATGEKEQLVSDLKERLRSEDMVMLKGSHGIHLEDVLAELR 455


>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 460

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 218/470 (46%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +A+       +     V  +  DSR ++P   F  I G   DGHDFI  AV  
Sbjct: 3   MQLSEIARALGTDEYPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D         +P   V + L AL KLA     +    ++AITGS GKTTTK
Sbjct: 62  GAVATLWAEDH-QERRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M    L +         ++NN +GVP+T+  M  + +  + E+GM   G++ FL+ LV+
Sbjct: 121 DMTAAVLEAEYNVVKTKANFNNELGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   E IA AK EI +GL++ G    N D+    LL+ ++  L 
Sbjct: 181 PDIAVITMIGEAHIEFFKTRERIADAKMEITDGLKEDGCFVFNGDEP---LLEQRAKDLN 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++  Y FG   + D      +     +  +  L  ++  V    +G +   N L  + + 
Sbjct: 238 VEQ-YRFGLKADNDVSASDIQGTDTSTMFKTNLDEET-TVTIPVLGDYNVTNALAAIAVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+    +AL  F   +    R      +    ++ + YN+NP + +A +   + +
Sbjct: 296 HKYHIDLKKEAEALVDFDLTK---NRTEWLTGKKGERILSDVYNSNPTAARAVLDSFANV 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-----DAL 418
             + EGRR+ VLGDM E+GE +   H  LAE L+    + V+L G H+ AL+     + +
Sbjct: 353 --NTEGRRLVVLGDMLELGENADQMHASLAEKLNAKRFAQVYLIGPHMKALEKRLIDEDI 410

Query: 419 PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                VHY ET +   L   + + +   D +++K+S+      +++ +  
Sbjct: 411 YSKDAVHYYETGELKRLTDDLSTEIQANDSILLKASHGIHLENVVDKIKN 460


>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
 gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
          Length = 468

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 216/471 (45%), Gaps = 19/471 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +++QA  G  IG   +  V+G+S DSRS+   + F A+KG  +DGH+FI  A+ K
Sbjct: 1   MLSIDEIIQATGGTLIGSGGK-MVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAK 59

Query: 64  GAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V  D +A+   + +     V + L AL  LA   R +    +I ITGS GKTTT
Sbjct: 60  GVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L          G+ NN IG+PL L RM     + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT    AHL++   +E +A AK E+F+ L+  G    N DD     L   +   
Sbjct: 180 EPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDPLISRLPTAAGVS 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  + A+      K    E     ++L    + V     G H   N L    
Sbjct: 240 R----LSFGL-RGAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNIYNALAAAA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +  D  T    L  F P + R    +     G   LID+SYNANPAS+ AA+  L 
Sbjct: 295 AAHAIGLDHQTIRAGLEEFTPYDKRFHVEQV----GDIVLIDDSYNANPASIAAALVTLK 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DA 417
            I      R IAVLGDM E+G  + + H ++  +L+   +  +++ G +   +     D 
Sbjct: 351 DIRQQN--RAIAVLGDMLELGSGAPAAHREVG-LLAATCVERLYVMGEYAETVAAGAVDG 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              + H++ + +   +   ++  +  GD ++VK S      ++   +   F
Sbjct: 408 GMGADHIYVAGSHGEIVEDLRRKVTKGDNILVKGSRGMHMDKVAEAIRNGF 458


>gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes J0161]
          Length = 457

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  +L DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGKP-KYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 471

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 209/478 (43%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   V G +  DSR   P   F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  V+ +         + +P   VDDV  AL  LA     R  AT++A+TGS G
Sbjct: 60  AVVETGAVAVLGSRP-------VGVPAIVVDDVQRALGALARHVVERLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L +   T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLRTKAPTVFTPGSLNNEIGLPLTALSATAETRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
           T L  P I ++  +  AH+  F G E+IA AK E+ E L      G   LN DD + + +
Sbjct: 173 TELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            A++ A     +  FG+S  AD +       +       +       +V     G H   
Sbjct: 233 AARTTA----RVLLFGESDEADVRAENVTLTAAGQPSFSLHTPSGCSDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L         ALS          R          T+++++YNANP SMK
Sbjct: 289 NALAAAAVAHELGMSAKEIATALSEAGSLSRW--RMEVTERPDGVTIVNDAYNANPESMK 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
           AA+  L+ +      R  AVLG M E+G+ + + H  +  +    N+  +   G      
Sbjct: 347 AALRALAAM--GRGRRTWAVLGRMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASW 404

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 405 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 461


>gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
 gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
          Length = 450

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 210/471 (44%), Gaps = 28/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L     ++   QG          +  ++ID+R +     F A+KG  +DGHDF   A
Sbjct: 1   MSELLNAEFIVSDKQG------DNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +V+    + +P   V D   AL + A   R +  A ++A+TGS GKT
Sbjct: 55  -----VAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTGSSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 110 SVKEMTAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEYDFAVIELGANHVGEIAYTTD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 170 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               K ++ FG   +++ DF     +   + +   +     ++ +     G H   N L 
Sbjct: 230 N---KRVWRFGLQAAEDIDFYATDVQITPQATHFTLHSPFGTVTIELPLPGRHNIANALA 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + AD+    + L       GR    + A  +    L+D++YNAN  SM AA  
Sbjct: 287 AAALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLATGK---LLLDDTYNANVGSMTAAAQ 343

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+GE +   H  + E      I  V   G     L DA 
Sbjct: 344 VLAEMP----GYRVMVVGDMGELGETAIDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDA- 398

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
             S +  + +    L   +   L +  V  V++K S S     ++  L E+
Sbjct: 399 --SGNGEHFQDKSALAARVSELLSEHPVITVLIKGSRSAAMEHVVRALQEK 447


>gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
 gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
          Length = 433

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 205/447 (45%), Gaps = 28/447 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++  A+     G   +    G SID+R+I P   + A++G  +DGHDF+  A
Sbjct: 1   MIEL-TLSEVAPALGTTWKGQ--EIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            QKGA  ++V  D+V       +P   V D   AL  LA   R R    ++AITGS GKT
Sbjct: 58  QQKGASAIIVERDVVCD-----LPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNGKT 112

Query: 121 TTKEMLTIAL-------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TTKEML           S+     A  G+ NN IGVPLTL  +  +  + I E+G +H G
Sbjct: 113 TTKEMLKTIFTQKISAESNEINVLATQGNLNNDIGVPLTLFNLQANHRYAIIEMGANHAG 172

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI +LT + +P +A IT  APAHL  F  +E +A AK EIF  L + G   +N DD++  
Sbjct: 173 EIAYLTQMAKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSHLTEDGIAIINNDDAYTT 232

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L    + +     I +F     AD   +  +   +     +  Q   + +     G H  
Sbjct: 233 LWHELAAS---HQINTFALENTADVTAKDIQLNEDSCDFILHTQKSDIAIHLPLPGQHNI 289

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L            ++   + L    P +GR + ++        TLID++YNANP S+
Sbjct: 290 MNALTASACALACGCSLEIIQQGLQNMQPVKGRLQLHKI----NGITLIDDTYNANPTSL 345

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AA+++LS   P        +LGDM E+G+ S  FH    +      + H+W  G     
Sbjct: 346 NAALAILSNYPPPY----WLILGDMKELGQKSAEFHQQAGQRAREVGVEHLWAIGDLSRY 401

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSS 440
             D+       ++    D L   +Q+ 
Sbjct: 402 AVDSFGEG--AYHFTNHDELINSLQNQ 426


>gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 480

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 211/481 (43%), Gaps = 23/481 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  +++  + G    I      V G + IDSR + P   F A+ G   DGHDF  
Sbjct: 1   MIAL-SLAEIIGIVGGQPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  V+    + A+     +P   V DV  AL  LA A  LR  AT++A+TGS G
Sbjct: 60  RAVADGAVAVLAARPVPAAAADAPVPSIVVPDVQAALGALARAVVLRLDATVVALTGSAG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT           + E+G    G IR+L
Sbjct: 120 KTSTKDLIAQLLRRHGPTVWTPGSLNNEIGLPLTAMSADETTRHLVLEMGARGKGHIRYL 179

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELL 235
           T L  P + ++  +  AH+  F G E IA AK E+ E L    + G   LN DD     +
Sbjct: 180 TDLTPPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEALPAAAEGGVALLNADDPLVRAM 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
             ++ A        FG++ +AD +    +          +       EV     G H   
Sbjct: 240 ATRTKA----RTVLFGEAADADVRAENVRLADGGRPSFTLHTPTGCSEVTMRLYGEHHVS 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   VD    ALS          R      +   T+++++YNANP SM+
Sbjct: 296 NALAAAAVAHELGMSVDEIAVALSEAGQLSRW--RMEVTERRDGVTVVNDAYNANPESMR 353

Query: 355 AAISVLSQISP---HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           AA+  L  +        GR  AVLG M E+GE S + H  +  +    N+S +   G   
Sbjct: 354 AALRALVAMGTAGQAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQE 413

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + A  +       VH S+ +      ++S L  GDVV+VK+S S G  R+   LL
Sbjct: 414 AAWLDMGAKNEGSWGEESVHVSD-VRAAVDLLRSELRPGDVVLVKASRSVGLERVAQALL 472

Query: 466 E 466
           E
Sbjct: 473 E 473


>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
 gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
          Length = 470

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPKDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     ++
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468


>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 449

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 210/454 (46%), Gaps = 26/454 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +    G+S DSR++A  E F A+ GP++DGHDFI+ A  +GA   +V  D +       I
Sbjct: 5   KIDFTGVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGI 64

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-------- 135
           P+  V +   AL +LA   R R    ++A+TGS GKTT KEM+   L    +        
Sbjct: 65  PLIRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEEMRT 124

Query: 136 -----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                  A  G+ NN IG+PLTL R+     + + E+GM+H GEI +L+ L +P +A+IT
Sbjct: 125 DAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVALIT 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
               AH+     +E +A AK EIFEGL++ G   +N DD    L +  +   G + I  F
Sbjct: 185 NAGDAHIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDPHNRLWRELA---GNRQIIDF 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G    A      +K     + + + L     E      G H  +N L    +   +   +
Sbjct: 242 GLKSKAKVSA-DYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGVSL 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            T    LS F   +GR +R          TLID+ YNANP S++AA      +    EG+
Sbjct: 301 KTIASGLSTFGGVKGRMQR---KCGVRGATLIDDCYNANPDSVRAA----LAVLARAEGK 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           ++ VLGDM E+G+  + FH  + +   +  I  +   G       +     I   +   M
Sbjct: 354 KVLVLGDMGELGDKGREFHEQIGDEARIAGIDELMALGDLSAYAAEKF--GIGARHFRKM 411

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L   I++       +++K S      R++  L
Sbjct: 412 EDLLANIETLPGPDVTLLIKGSRFMQMERVVKRL 445


>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 462

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 224/470 (47%), Gaps = 18/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++ QAI  ++           + G+  DSR I   + F  +   H DGHD+I +A+
Sbjct: 3   MTIGEVAQAINANTENFDKAMLDESLTGVCFDSRKIQAGQLFVPLVAEH-DGHDYIDNAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +  +D    +  L+IP   VDD+L A  +L+     +    +IA+TGS GKTT
Sbjct: 62  AGGASATLWASDHADRLP-LTIPALVVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LSS         ++NN IG+P T+ +M  + +F + E+GM   G++ FL+ L
Sbjct: 121 TKDMIAAILSSTFNVTKTQDNFNNEIGLPYTILQMESNTEFLVAEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +AVIT I  AH+  F   ++IA AK EI  GL+  G    + D+        +   
Sbjct: 181 ARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKADGFFVYDGDEPLLTERAQQVDE 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             IK   +FG+  + D      K    Q+   V L    ++     IG +   N L  + 
Sbjct: 241 SVIKA--TFGRKDSNDVFAIDSKDGQYQTQFHVNL-WPEIDFTIPMIGDYNVNNALAAIS 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  I           L+ F   +    R +         ++ + YN+NP + K  ++   
Sbjct: 298 VGRIFRIHPQMMADKLAKFDLTK---NRTQWLSGSKGERILSDVYNSNPTAAKEVLTAFK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
             +   +GRRIAVLGDM E+G  S++ H  LA+ L   +I  V+L G  + AL + L   
Sbjct: 355 NTTT--KGRRIAVLGDMLELGTQSKAMHASLADALDPASIPVVYLIGADMDALYEKLKPV 412

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             P ++H + ++ +D L   +Q+ L   D V++K+S+      ++  L++
Sbjct: 413 YAPENLHYYQADQLDELTSDLQAELSADDEVLLKASHGLHLENVVAKLVK 462


>gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
 gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
          Length = 452

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 211/464 (45%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   ++G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   SLSQLAVILKGELHGADTD--IDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP 
Sbjct: 118 TAAILGECGNTLYTAGNLNNDIGVPMTLLRLTPEHQYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   LN D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPANGIAILNADNNDWLNWQS---VIGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +   +DF        S  +   ++     ++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNLATSDFSATNIHITSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASALAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR      A NQ    L+D+SYNAN  SM AA  VLS++ 
Sbjct: 295 AVGAPLQAIKAGLAKLKAVPGRLFPVHLAENQ---LLLDDSYNANVGSMTAAAQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G+ +++ H  + E      I  V   G     +  A   S   
Sbjct: 352 ----GYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466
            +      +   +++ + +  ++  +VK S S     ++  L E
Sbjct: 405 EHFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQE 448


>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes str. Scott A]
          Length = 470

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 213/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPKDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468


>gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum EA 2018]
          Length = 455

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 216/467 (46%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L TF+++ +A+ G  I    +   N +SID+R ++    F AI G +++G+ FI +A
Sbjct: 1   MENL-TFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNA 59

Query: 61  VQKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           VQKGA L +V+            I +  V+D   AL  LA   R      ++AITGS GK
Sbjct: 60  VQKGAALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++    L S  + +   G++NN IG+PL + ++    +  + E+GM+H  EI  + 
Sbjct: 120 TSTKDITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP IA+IT I  +H+ N    E I  AK EI +   K   + +N D+        K 
Sbjct: 180 KAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL-----KK 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           H      +     +K  +            S  EV  QG+ +  V +  G H  +N +++
Sbjct: 235 HEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEV--QGEKL--VLNMPGKHNIENAMLS 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L    +   K L        R       +N     ++D+SYNA+P SM AAI V
Sbjct: 291 IAAALKLGLTFEEIRKGLKDLELTAMRLD----IVNGENIVIVDDSYNASPDSMIAAIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +  +   RRIAVLG M E+GE S   H ++       NI  + + G    A  D   
Sbjct: 347 TKNLKGN---RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYK 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +    ET + L  F+++ +  GD+ ++K+S    F  ++  L E
Sbjct: 404 DKENFSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 450


>gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 452

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 221/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPRGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A + T    L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTTIKAGLATLKAVPGRLFPVQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKRSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   +++ L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLKALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 460

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 215/459 (46%), Gaps = 18/459 (3%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            + L + + G  +        + GI IDS+ I     F  I     DGHD++  A+  GA
Sbjct: 12  LNKLEEVVDGEGLQESFHNIEIQGICIDSKKIKKGNLFVPIIRVK-DGHDYVKEAMDNGA 70

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +             IP+  VDD L AL +LA   R      +I ITGS GKTT K++
Sbjct: 71  VASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKDI 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P 
Sbjct: 129 INTILSTTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSKIAQPD 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I  +HL      EEIA AK EI +GL+  G    N D+     L  K+  L   
Sbjct: 189 VAIITMIGQSHLETLGSREEIAKAKLEIIDGLKDEGLCLYNGDEP----LLLKNKNLSSI 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG+    DF     +        +  L   +++      G H   N ++ + I   
Sbjct: 245 NCKAFGEKYTNDFFPTNVQLDEYGIHFK--LNDSNIQYDVPLHGKHNILNAIVGIAIGQY 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V+   KA            R++    +  FT+I++++NA+P+SMKAAI     ++ 
Sbjct: 303 YNVPVEKIQKA---LRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETFQTLNA 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +   ++I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   +   S 
Sbjct: 360 YK--KKIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKYDSG 417

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            V    +   +   +   +   D+V++K S       ++
Sbjct: 418 KVQSFNSKAKIAEEVLKVITKKDIVLLKGSRGIALEEIV 456


>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
 gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
          Length = 444

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 223/463 (48%), Gaps = 20/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   ++G  +G        GIS+DSRSI P E F A++G  YDGH ++  A Q G
Sbjct: 1   MKLSTLASRLKGTLLGA--DAHYKGISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   VV       +    +P+  V+D   AL +LA   R +    II +TGS GKTTT+E
Sbjct: 59  AAAAVVE-----EVIETDLPLVLVEDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTRE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+ +    A   ++NN IG+PLTL  +  +  + + E+G +H GEI +LTH+ +P
Sbjct: 114 MIRSILAEMGPVLANFKNFNNAIGLPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I PAHL  F  I  +A AKAEIF GL + G   LN  D+  ++L+  S     
Sbjct: 174 DIALITNIGPAHLQGFGSILRVAEAKAEIFSGLAQKGVAILNAADNHRDILEKASAQYRR 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +FG ++N DF  R+ +          +   G+ + +  +  G H   N L    + 
Sbjct: 234 ---VNFGLTQNCDFYARQIQLDKTGRPTFLLVSSGEEIIIRLNLSGQHHVMNALAAAAVA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +       L    P  G   R      +   TLID+SYNANP+S+ AA+ +L+  
Sbjct: 291 RQVGVEFSVIQSGLEKMQPLSG---RVINRTTKTGATLIDDSYNANPSSVAAALKLLA-- 345

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H +G RI VLGDM E+G+ + ++H  + E+     I  V+  G        A     H
Sbjct: 346 --HYKGLRILVLGDMSELGKSAGAYHRQMGELAKALTIDKVYTCGDLSEETAKAF--GAH 401

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +      L L ++  +     +++K S +    ++   L++
Sbjct: 402 GKHYSNHQKLILALKPDVQKNVTILIKGSRNAQMEKVAAALMD 444


>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-003]
          Length = 457

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALFSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Pantoea ananatis AJ13355]
          Length = 452

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 216/470 (45%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F AI G  +D HDF   A
Sbjct: 1   MIPV-SLSTLAEIASGTLHGD--DLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KG   ++V+  +  S     +P   V D   A  KLA   R ++ A ++A+TGS GKT
Sbjct: 58  IAKGVKALLVSKHLPVS-----VPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTASILRQCGETLHTAGNLNNDFGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +E +A AK EIF GL   GT  LN D + +   +   H
Sbjct: 173 LVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGLPARGTAILNADSNDWPRWQENLH 232

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               KT++ F  ++ + DF     +   + +   +       +++    G H   N L  
Sbjct: 233 G---KTVWRFSPQAADCDFGAHDIRIRQDGTHFVMHTPRGEADIILPLPGRHNIANALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L       GR    R + +Q    ++D+SYNAN  SM AA  V
Sbjct: 290 AALALSVDAPLSAVQAGLKRLQSVPGRLFPVRLSEHQ---LILDDSYNANVGSMVAAAQV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS++     G R+ V+GDM E+G+ S+ FH ++        +  V  +G     L ++  
Sbjct: 347 LSEMP----GYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLSTGQFSHFLSES-- 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            S    +      L   ++  L +     V++K S S    +++  L E+
Sbjct: 401 -SGVGEHFSDKTALTERLRQLLSEHQEMTVLIKGSRSAAMEQVVQSLQEK 449


>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
 gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
          Length = 472

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 204/466 (43%), Gaps = 15/466 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +     G           + G+  DSR+I P   F  I G  +DGH+F    +  G
Sbjct: 5   SLKSIADLCGGTLSRNQDANIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG      D         +P+  V+D L AL  LA A    + A ++ ITGS GKTT K+
Sbjct: 65  AGAAFWQRDHQPVPD---LPLILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +  K +   G+YNNHIG+PLT+  M  D D  + E+GMS   EI  L+ + RP
Sbjct: 122 MVSALLETTYKVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+      EEIA AK EI  G++  G +  + D+   + + A+   +  
Sbjct: 182 DMTVITNIGEAHMLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKP 241

Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +    ++FG  +  D         +                    +G H   N L  + +
Sbjct: 242 EGLNTFTFGNQETNDDYPTGLMFHARGIIFTSNRHAGEG-FSLPLLGRHNVVNALAAMAV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + L    +      S F   +    R          T+++++YN++P ++KAA+ VL  
Sbjct: 301 AAHLGIGDEAI---RSGFANLKLSSMRIEAVETPFGVTVLNDAYNSSPTAVKAAVDVLGD 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
           +  +   +RIAVLGDM E+G+    FH ++ + LS  N   V+  G   +   +      
Sbjct: 358 MKGY--RKRIAVLGDMLELGQREGEFHAEIGDYLSPDNADLVFTYGPLSVHTAERAKLRF 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V      + L   +   + + D+V+VK+S       +++ L 
Sbjct: 416 PDGAVLSFTDKEKLIASVLEHVSEKDIVLVKASRGMRLEHVVDALK 461


>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
 gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
          Length = 454

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 230/468 (49%), Gaps = 21/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    ++L+  + + + I  +  V GI+ DSR I+  E F A++G ++DG++F   AV+K
Sbjct: 7   LKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAVEK 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+ ++   I S +IP F V D L A  K+A   R +    +IA+TGSVGKTTTK
Sbjct: 67  GAIAIIVDREVPV-IASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS   K +    +YNN IGVP TL  +    D+ + E+ M   GEI  LT + R
Sbjct: 126 ELIAAVLSQRGKVHKTRANYNNEIGVPKTLLELDKSHDYAVIEMAMRAKGEIALLTEIAR 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT +  AH+      E IA+AK E+ E +       LN+D+    LL   +H + 
Sbjct: 186 PTLGIITNVGTAHIGRLGSTEAIAAAKCELLEQMSPDTIAILNHDNP---LLIETAHKVW 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G  +  D   +            ++++G +        G H A N L  L + 
Sbjct: 243 QGETLTYGL-EGGDLVGQLIDAQ------TLRVEGINFP--LPIPGRHNALNYLAALAVA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D  T +      +   GR +R++         L+DE+YNA   SM AA+ +L Q 
Sbjct: 294 KVLNLDW-TPLTEGLTVNLPSGRSRRHQLP---NDVLLLDETYNAGLESMIAALELLKQT 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSI 422
                 R IAVLG M E+G+ S  FH  + E +   NI H+ +      A + A+    +
Sbjct: 350 PGQ---RHIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLTDDPQAQEIAVGADGV 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                +T   L   +Q  +  GD ++ K+SNS G  R++  LL + P 
Sbjct: 407 TTQCWQTHQALVQQLQEMIKPGDRILFKASNSVGLNRVVESLLNDQPV 454


>gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 459

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/469 (30%), Positives = 224/469 (47%), Gaps = 26/469 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   ++G  IG     F++ +S DSR++  Q  F A+KG ++DGH F   AV  GA
Sbjct: 5   SLSELATRLKGQLIGD--DLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V  ++  +          V++   A+ ++    R +   T +A+TGS GKT+ KEM
Sbjct: 63  NALLVERELPINA-----TQLIVNNSQKAMGEIGAYVREQVAPTCVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   +     G++NN IGVPLTL R+    +FG+FELG +H GEI + + LV+P 
Sbjct: 118 IATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEIDYTSSLVKPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  +E +A AK+EIF  +   GT  +N DD+F +++     A    
Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHISTGGTAVINADDAFADVML---QASSHV 234

Query: 246 TIYSFGKSKNA----DFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               FG    A    D            +    +    +   V     G H   N L   
Sbjct: 235 KQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRVELPLAGRHQVSNALAAT 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L   +    + LS+  P +GR    +     G  T+ID+SYNANPAS+ AAI  L
Sbjct: 295 SICIALGLSLPLICQGLSLLQPVKGRMLPSQL----GRVTVIDDSYNANPASVGAAIDWL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +I    +G R  VLGD+ E+G+ +   H +L E+     +S ++  G        A   
Sbjct: 351 QEI----KGNRCLVLGDLGELGDNAALLHRELGELAKAKGVSALFCVGTLSEGASHAF-G 405

Query: 421 SIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           S H H  +  + GL  +I + L     V+VK S S    R++  L   +
Sbjct: 406 SKHYHDIDGLVAGLVQYI-NELPADITVLVKGSRSARMERVVEALTTAY 453


>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Oceanobacillus iheyensis HTE831]
 gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
           [Oceanobacillus iheyensis HTE831]
          Length = 455

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 228/467 (48%), Gaps = 17/467 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T   L +    H   I     +  ++ D+R  +    +  I G  +DGH+FI  A++ 
Sbjct: 2   LFTVQWLAELFPKHQGKISTDITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKN 61

Query: 64  GAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA   + +  +   S    S PVF V+D + A+ +LA +       T++ +TGS GKTTT
Sbjct: 62  GAIATLWDKSIPLPSEWDNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  + +  KT A  G+ NNHIG+PLT+  M  D +  + E+GMS  GEI  L+ + 
Sbjct: 122 KDLITSVVKTSYKTTATQGNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   VIT I  +H+ N    + IA AK EI EG++  G +F++ D+    LL  ++  +
Sbjct: 182 EPDYTVITNIGESHIENLGSRKGIAKAKLEIIEGIKSNGNLFIDDDEP---LLAKENIDM 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I   G +K +D  +   K   +++  EV           + +G H A+N    + I
Sbjct: 239 DDSQIIGIGFTKESDINISNVKVHPDRTTFEVT----DKPYHVNLLGEHHAKNAAFAISI 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    A   F+  E  G R+          +I+++YNA+  SMKA+I V+ +
Sbjct: 295 GKALNISHENIQLA---FNKLEVTGMRFELETGINGVHIINDAYNASATSMKASIQVVKE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           +       ++ VLGD+ E+G  S+ +H  +AEV+    IS ++  G     + D + +  
Sbjct: 352 MEGFQN--KVLVLGDILELGTYSEHYHRSIAEVIDSR-ISEIYTYGEQAFYIYDEITKQH 408

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++VHY +  + +   ++  L +  +++ K+S    F   I  L +
Sbjct: 409 PKVNVHYIKQREDVVPSLKEHLNNQTLILFKASRGMKFEMFIKELQQ 455


>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
 gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
          Length = 475

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 264/468 (56%), Gaps = 4/468 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLW+   L+ A+     G +      G+SID+R++   + FFAIKG   DGH+F+  A +
Sbjct: 5   PLWSGLALVGALHARVSGAL-AREATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   V++    A       P+  V DV  +L  L   AR RS A I AITGSVGKT+T
Sbjct: 64  KGAAAAVIDEAHAAEFSGAG-PLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M  + LS   +T+A + SYNN  GVPLTLARMP    FG+FELGM+H GEI  L   V
Sbjct: 123 KDMTRLMLSRFGETHASVASYNNQWGVPLTLARMPAASRFGVFELGMNHAGEITGLVAQV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+AV+T +A  HL +F+ +E IA AKAEIF  L+  G   +N DD+ +E L A +   
Sbjct: 183 RPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSALD-GGVAIINRDDATYERLAAAAAPT 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I+SFG+S+ A+ +L  +K   +   +E  + GK +       G H+A N L  L I
Sbjct: 242 AG-HIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALLI 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++   DV+ A   L+ F P  GRG R +     G FTLIDESYNANP SM++A  +L  
Sbjct: 301 AAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSMRSAFELLGA 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +P   GRRIAVLGDM E+G      H +LA  L+      ++ +G  + +L  A P ++
Sbjct: 361 TTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFTAGPLMASLYYAAPNAM 420

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +  T   L   + ++L  GDVV+VK SNS    R++  + ++F  
Sbjct: 421 RAAHRRTALELEEAVLAALRAGDVVMVKGSNSSRMSRIVAAVRQKFAP 468


>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
 gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
          Length = 451

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 220/462 (47%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 1   MNLKKLEKVVNGEGLQESFHLIEMHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRRELNVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 118 DIIGGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LG
Sbjct: 178 PDVAIITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLFLYNGDEP---LLSQNINMLG 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I++  SFG     D      +        +  L    ++      G H   N ++ + + 
Sbjct: 235 IES-KSFGGKYTNDLFPTNVQLDEYGVHFK--LNNTKIQYDVPLHGKHNILNAIVGIAVG 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 292 QFYKVPIEKIQEA---LQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   ++I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H
Sbjct: 349 NAYE--KKIIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFTYGALSEIVAEEARKNYH 406

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              V   +  D +   I   +   DVV++K S       ++ 
Sbjct: 407 TEKVQSFDNKDEIAEEILKVITKKDVVLLKGSRGMALEEIVQ 448


>gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 452

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 211/465 (45%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q   G   G      +  ++ D+R  A    F A+KG  +D HDF+  A+  G 
Sbjct: 5   TLQQVAQLTGGTLHGD--DRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGC 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +        +P   V D   AL +LA   R +S A I+A+TGS GKT+ KEM
Sbjct: 63  SALLVSKRLPVE-----LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +T    G++NN IGVPLTL R+  +  + + ELG +H GEI + + LVRP 
Sbjct: 118 TAAILRECGETLYTTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSGLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   HA   K
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQQALHA---K 234

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           TI+ F  +  ++DF        ++ +   +      ++V+    G H   N L    +  
Sbjct: 235 TIWRFSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNIANALAASALAL 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + LS      GR      + ++    L+D+SYNAN  SM AA  VL+ + 
Sbjct: 295 SVGAPLSAVRQGLSTLKAVPGRLFPLALSADK---LLLDDSYNANVGSMTAAAQVLAGMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   S   
Sbjct: 352 ----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGSLSHGISDA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            +      L       L       ++VK S S    +++ +L E+
Sbjct: 405 EHFADKAALGARALELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
 gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
          Length = 470

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 213/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPMDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 366 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468


>gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
 gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
          Length = 452

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 217/465 (46%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLAGILGGELKGD--DLTLDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +        +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPLDCD-----LPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + DF + ELG +H GEI +   L RP 
Sbjct: 118 AAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYSGLPENGIAIMNADNNDWLNWQS---VIGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  ++DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLPLPGRHNIANALAAASLSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A +      L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 AAGAPLAAIKAGLANLKAVPGRLFPVQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ +        I  V  +G    A+ +A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTGKLSQAISEA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            +      L   +++ + +     ++VK S S     ++  L E+
Sbjct: 405 EHFADKTALIARLKALVEEQQMITILVKGSRSAAMEEVVRALQEK 449


>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 448

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 209/467 (44%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W   D+ +A+ G + G         ++ DSR+      F A+KG  +DGH++I  A
Sbjct: 1   MIGDWLTDDIAKAVGGAAEGD--SVAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V     M  +  +  +    V D L  L +L    R R    + A+TGS GKT
Sbjct: 59  VSQGAVAV-----MAQAKANADVAQIIVPDSLAGLGRLGALNRSRFNGPVAAVTGSAGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   LS         G++NNHIGVPL+L ++  +    +FELG S +GEI +   
Sbjct: 114 TVKELLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEEHRSAVFELGASAVGEIAYTVA 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++   A  H+  F  +  I  AK EI  GL + G   LN DD+ F      + 
Sbjct: 174 LARPQVAILNNAAAVHVEGFGDLASIVKAKGEIVCGLPEDGVAVLNKDDANFSAWVEMA- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + + SFG   +A  + +        S   +      ++      G H  +N L   
Sbjct: 233 --GARKVISFGLDDSAMVRAQNIHLELNGSTFRLSAPEGGIDATLPLPGAHNVRNALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   ++     L+   P +G   R    L      ++D++YNA+P SMKAAI VL
Sbjct: 291 AAALALGWTLEEVRDGLASAAPVKG---RMNKLLGINGSVILDDTYNASPTSMKAAIDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++      GRRI  LG M E+G +++  H ++A+      +  +   G      ++    
Sbjct: 348 ARYP----GRRIVALGHMGELGSVAEDAHREVAQYARDNGVDMLLGIGRWAAEYREGFGD 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              V    T D +  +++  L     V+VK S S     ++  ++E+
Sbjct: 404 ESPV--VTTHDDIAAWLRERLDSNTTVLVKGSRSAAMENVVKQIVEK 448


>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 457

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDVPNPPKDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     ++
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 450

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 225/468 (48%), Gaps = 24/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW   ++ + +  +         +   SI+S+SI     F  +KG  +DGHDFI  A
Sbjct: 1   MS-LW-LSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGK 119
           + +GA   +   D+         P   V+D L A+  LA A R  R    +I ITGSVGK
Sbjct: 59  ISRGAISFITQKDVNTEKSC---PYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE +   LS+  ++Y   G++NNHIG+P ++  +P +V     E+GMS+ GEI FL+
Sbjct: 116 TTTKEYVFNVLSNKFRSYKNEGNFNNHIGLPYSILNIPDEVKVATLEMGMSNFGEISFLS 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P+I +IT I  AH+ N      I  AK+EI +G+   G + +N D+    +L +  
Sbjct: 176 KIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEIQDGMPNDGILIINNDND---ILYSHR 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           H L  + + + G   +ADF+ +  ++     +  V     + +       +H   N L  
Sbjct: 233 HELK-RKVVTVGIENDADFRAKDIQKVDNGFFFVVS----NHKYFIESFNFHDIYNSLFA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  IL  + +           K G  +R+   + +   T++D+SYNA+  SM +AI+ 
Sbjct: 288 IAVGEILGIEKEAI---EKGILKKCGLRRRFEV-IKKDGLTVVDDSYNASTHSMMSAING 343

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +   S    G++I VLGDM E+GE S+  H  + + +    I  +  +G     + D + 
Sbjct: 344 VCGFS----GKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICTGKDAFYIFDEVR 399

Query: 420 RSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           ++      Y  + +     ++  +    VV+ K+S       L++  L
Sbjct: 400 KNSSSIKAYYASKEECLNILKKEIEIETVVLFKASRGMKLDELVDNFL 447


>gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
 gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
          Length = 452

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 211/465 (45%), Gaps = 23/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V+D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLACD-----LPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A    +G 
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGD 233

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++ F  +  N+DF     +  S  +   +Q    +++V+    G H   N L    + 
Sbjct: 234 RKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + AD+      L+      GR    R   +Q    L+D+SYNAN  SM AA+ VLS++
Sbjct: 294 MAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S  
Sbjct: 351 P----GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRA---SGV 403

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
             +      +   ++  L +     ++VK S S     ++  L E
Sbjct: 404 GEHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia
           stali symbiont]
          Length = 453

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 209/471 (44%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T   L +   G   G      +  ++ D+R +     F A+ G  +D +DF   A
Sbjct: 1   MIPV-TLQILAEISGGQLHG--SDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++VN  +      + +P   V D   A  +L    R ++KA ++ +TGS GKT
Sbjct: 58  IASGAQALLVNRRLA-----VDVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+     + + E+G +H GEI + T+
Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTPQHAYAVIEMGANHQGEIAYTTN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D +     +++  
Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFGGLPVHGTAIINADSNDLPNWQSQ-- 230

Query: 241 ALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               K ++ F     AD  F+       ++ +   +      + V     G H   N L 
Sbjct: 231 -FADKILWRFSPQPMADAEFRASDIVLRADATLFTLHTPRGDIAVELPLPGRHNIANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A +      L    P  GR    R A   G   L+D+SYNAN  SM AA  
Sbjct: 290 AAALALSVDAPLTAIQSGLKTLQPVPGRLFPIRLA---GNQLLLDDSYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL  +     G R+ V+GDM E+G+ +++ H  + E      I  V  +G     + ++ 
Sbjct: 347 VLGDMP----GFRVMVVGDMGELGDEAEACHRQVGEAAKAAGIDCVLSTGSFSHLISES- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
             S    +  +   L   +++ L       ++VK S S    +++  L E+
Sbjct: 402 --SGRGEHFASKAELTERLRTLLSQHADITILVKGSRSAAMEQVVQSLQEK 450


>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
 gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
          Length = 468

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 215/466 (46%), Gaps = 16/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T+ ++  A  G  +    +G     GI+ D+R +   + F A++G  +DG DF   A++
Sbjct: 4   MTWDEIRAATGGRLLLGKMRGTDAFAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALR 63

Query: 63  KGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  V+    V+      +  +S  V GV D L A  ++A A R++    ++A+TGS G
Sbjct: 64  AGAVAVMLPEPVSDAHRKELDRMSGAVIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+   ALS          +YNN IG+PLTL  M  +    + E+GM   G+I  L
Sbjct: 124 KTTTKELTAAALSGRGAVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAAL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P + ++T +   H+     IE IA AKAE+   +   G + LN DD+   ++  +
Sbjct: 184 AAIAAPTVGIVTNVGETHMELLGSIENIARAKAELVAAIAPGGIVILNADDA--RVVAMR 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     I ++G    AD + +  +    ++   V   G+  +     +G H   N L 
Sbjct: 242 AQAADGVRILTYGIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALA 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L          LS   P + R + +      G +T I+++YNA+PASM+AA+ 
Sbjct: 302 ALAAGFALGLSPQEMQAGLSRLAPPKMRYEVHHV----GAWTFINDAYNASPASMRAALE 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
             +++ P   GRRIAVLGDM E+G  S   H  +    +    + V   G     + + A
Sbjct: 358 TTARLYP---GRRIAVLGDMLELGAASAEGHRSVGRTAAAEGFAVVITYGDEARRIYEAA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                   ++ T +     ++  L DGD V+ K S       ++ L
Sbjct: 415 AAAGCLCRHAATHEEAANLLRGMLADGDTVLFKGSRGMRMEHIMEL 460


>gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
 gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
          Length = 465

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 221/472 (46%), Gaps = 17/472 (3%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T  ++  A+   +         +  ++ D+R +     F  + G + DGH+FIL 
Sbjct: 1   MMISLTVKEIAMAVGAINDTSKWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           AV+ GA + + +  +      L    P+  V+D L AL  LA     +    ++ ITGS 
Sbjct: 60  AVENGAAVSLWSKPLKDLPLELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+M    LSS  + +   G++NNHIG+P+T+  MP++ +  I E+GMS  GEI+ 
Sbjct: 120 GKTTTKDMADAVLSSQYRVHKTQGNFNNHIGLPITILEMPIETEVVILEMGMSRAGEIKV 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ L +P +A+IT I  +H+  F     IA AK EI  GL++ G +    ++    LL+ 
Sbjct: 180 LSDLAKPDVAIITMIGESHIEFFGSRAGIADAKMEICSGLKENGVLIYPGEEP---LLQE 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   L    + +FG S   D           Q+   V  +   + V    +G +   N L
Sbjct: 237 RVAVLKGSQLKTFGTSPENDLYPLNIDAQMNQTSF-VTNERPDLVVSLPVLGTYNVNNAL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L   ++ +   L+ F   + R +  +        ++++++YNANP +MKA +
Sbjct: 296 AALMAGMTLGISIEKSAPKLAQFQLTKNRTEWLK---GINESSILNDAYNANPTAMKAVL 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              S  +    G++I VLGDM E+GE S   H+ + + L    I  V L G  +  L + 
Sbjct: 353 DNFSTFT--NTGKKIVVLGDMLELGEQSTQLHLSVKDSLDPTQIEKVVLYGEQMNVLYEV 410

Query: 418 LPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L          +++   + L  F++  +  GD +++KSS       ++  L 
Sbjct: 411 LKGKFDEENLSYFTGAKEPLIQFVKKQIEHGDYILLKSSLGTDLLSVVRALQ 462


>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 470

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 212/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  VD+ L +L +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPTDF--PVILVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++        S+  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LSNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    +    +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIHAEAEGTSFVTNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKKMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+GELS   H + AEVL    I  V+L G  + A        I  
Sbjct: 366 SKGKP-KYLVLADMLELGELSTKLHRESAEVLEKDTIEKVFLYGEAMKAFGTVAETKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVQHFDTKESLETALLSEVNGNEWILVKGSYGMGLKDVVENLI 468


>gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes 220]
          Length = 457

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 213/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDVPNPPKDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 467

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 205/466 (43%), Gaps = 11/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  D+L+A   H  G         IS D+RS+ P   F A++G  +D HDF+  A
Sbjct: 1   MAARFSDADVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG  VV             P++ V D L AL  LA   R R +  + A+ GS GKT
Sbjct: 61  HAGGAGGAVVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L++        G+ NN +GVPLTL R+       + E GM+  GEI  LT 
Sbjct: 121 TTKEMVGAILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   +IT + P HL     +E +A A+ E+F  L       +N DD       AK  
Sbjct: 181 VIQPQAGLITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAK-- 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G     +FG++++AD +L + +    E   + V+ QG+   V  H IG H A N    
Sbjct: 239 --GRGKRLTFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L    +  ++            +R          T++D+ YNANPASM AA+  
Sbjct: 297 FALALALGYSPEECVRG---LESARPYARRLNVVDGLHGVTVVDDCYNANPASMDAALDT 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR +AVLGDM E+G      H  L    +      V   G        A  
Sbjct: 354 LRTL-VTAGGRAVAVLGDMLELGPGELEEHAALGTRAAGR-AQLVAFFGPRSEKGFQAAS 411

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +   +  L  ++   L  GDVV+VK+S      R++  L
Sbjct: 412 GLGDATAHFTEVGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 457


>gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL J1-023]
          Length = 470

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 212/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V++ L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPTDF--PVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS  A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A K      I  
Sbjct: 366 SKGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAETKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVQHFDTKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 468


>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella longbeachae NSW150]
 gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella longbeachae NSW150]
          Length = 441

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 132/443 (29%), Positives = 207/443 (46%), Gaps = 19/443 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI IDSR +     F AI+G  +DGHDFI  A  +GA   VV+      +  + I
Sbjct: 17  STELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVS----HRVEGVHI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V D + AL K+A A R      +IA+TGS GKTTTKEM+   L S   +++  G+ 
Sbjct: 73  PQFVVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAILPS--PSHSTKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG PL++ ++     + +FELG +H GEI     +V P + +I  IAPAH+  F  I
Sbjct: 131 NNHIGAPLSVFQLNSQHRYAVFELGANHPGEIAHTVAIVHPDVTLINNIAPAHVEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A AK EI +GL   GT  +N DD++          L  K +  F     AD   +  
Sbjct: 191 DGVARAKGEIHQGLSSAGTAIVNDDDAYAHFW---DELLLDKKVLRFSIEHPADVYAQDV 247

Query: 264 KQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  S+      + +     ++     G H  +N L        +        + L++F  
Sbjct: 248 QLDSQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGLSAKEIQQGLNLFSG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      +   T+ID++YNAN  S+  A+ VL++      G++I V GDM E+G
Sbjct: 308 VKG---RLTVLTGKNQSTVIDDTYNANLRSVLVALEVLAE----HPGKKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +   H ++        I  +   G       +A    +   Y  + + L   + + L 
Sbjct: 361 VWATQHHQEVGIAARRLGIDQLLCCGSKSRLAAEAF--GVGGEYFTSQEQLVQNLVAKLS 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
              VV+VK S S    ++++ L+
Sbjct: 419 ADTVVLVKGSRSSAMEKIVHQLV 441


>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
 gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
          Length = 447

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 207/445 (46%), Gaps = 15/445 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  D+R I   + F    G   DGH+F+  A + GA       D+         
Sbjct: 13  DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNPPMDF-- 70

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++
Sbjct: 71  PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      
Sbjct: 131 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           EEIA AK EI  GL  +G +   ++++         +  G     +FGKS+ A+    + 
Sbjct: 191 EEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEI 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +E +      +   +E+    IG H   N +  +     +  + +    AL      
Sbjct: 246 RAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERS 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R      +    +++++YN++P ++K  +     +   G+  +  VL DM E+G+
Sbjct: 305 KS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKP-KYLVLADMLELGD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A  D     I    VH+  T + L   + S 
Sbjct: 361 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 420

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 421 MNGNEWILVKGSYGMGLKDVVENLI 445


>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
 gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
          Length = 515

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 223/470 (47%), Gaps = 21/470 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + QA+ G       QG    I  D+R I   + F A+ G ++DG+ F+  A+  
Sbjct: 49  IWDCQQIAQAVGGIL---AKQGSPGSICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    +  +          +    V D L AL+KLAV AR R +  ++ ITGS GKTTTK
Sbjct: 106 GCAGAIGRSM----PTDWPVGFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTK 161

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ +AL S+   +   GS NNHIGVPLTL  +P      + E+GM+HLGEI  L+ + +
Sbjct: 162 AMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRICK 221

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+  + PAH+ N   +E++A AK E+F    +     LN DD     +     A+ 
Sbjct: 222 PSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPDAM- 280

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMT 299
              I  FG+S+ +D +L   +  S    ++  LQ + +           G H+A N    
Sbjct: 281 ---IRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACAA 337

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + + L   +  A +++S F P    G R R         LI+++YNANP SM  A+ +
Sbjct: 338 ACVATSLGVPLKAASESISKFSPV---GMRSRLEAISSNIQLINDAYNANPMSMTVALEI 394

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +    +GR++  LGDM E+G+ ++  H+   +     ++  +  +G       + L 
Sbjct: 395 LASV--ECKGRKVVALGDMLELGDFARGAHMKAIKCCQEVHVDVIGTAGPAFSDALNGLE 452

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V   E    L   + + +  GDVV+VK S       +++ +  +F
Sbjct: 453 LEKCEVVKCENSAALAEELTARVTPGDVVLVKGSRGMRMELVVDAIKRKF 502


>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
           [Bacillus cereus E33L]
 gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus E33L]
          Length = 454

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 119/462 (25%), Positives = 214/462 (46%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 4   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDN 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 63  GAISSLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 121 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      +EIA AK EI +GL + G    N D+  F     K+  + 
Sbjct: 181 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLFSR-NNKTSGVN 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   +FG+    D      +        ++      ++      G H   N ++ + + 
Sbjct: 240 CK---TFGEKDTNDLFPTNVQLDEYGVHFKLNH--TKIQYDVPLHGKHNIFNTIVGIAVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 295 QFYKVPTEKIQEA---LQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + +   ++I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   +   
Sbjct: 352 NAYK--KKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEASKKYD 409

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              V   +    +   +   +   DVV++K S       ++ 
Sbjct: 410 TGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451


>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
 gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
          Length = 459

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 202/468 (43%), Gaps = 22/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G   V    V G++IDSR I     F  IKG   DGH FI   ++
Sbjct: 4   MSLQEITAACHGQYFGGEAVSHIEVAGVAIDSRKIEKDWLFIPIKGARVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +        + ++S P   VD    AL  +A   R      ++ ITGSVGKT+T
Sbjct: 64  KGALCTL----SEVVLENVSHPYILVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + E+G++H GE+  L  + 
Sbjct: 120 KEMIASVLEQKYHVLKTAGNFNNEIGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I   HL N    + I  AK E+F+ ++    I LN DD     L   +   
Sbjct: 180 RPDICVITNIGLCHLENLIDRDGILKAKTEMFDFMQPDAKIILNGDDD---KLITVTDVK 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G   ++ FG S   D         S +     + L    ++ +    G HM  N L    
Sbjct: 237 GQTPMF-FGLSTELDAFADNIHTHSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGAL 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +   K +    P  GR              +ID+ YNANP S KA+I VLS
Sbjct: 296 VGRELGLTAEEIKKGIESLTPVSGRNNMILT----DSLLIIDDCYNANPVSTKASIDVLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDAL 418
                 E R++A+LGDM E+GE  +  H  +    S   I  V   G    A     + L
Sbjct: 352 GA----ETRKVAILGDMFELGEDEKELHRQVGVHASEKGIDLVICIGELSKATAAGAEEL 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V + +T    F  +   L   D ++VK+S+   F  ++  L E
Sbjct: 408 SAGNQVVHFDTKADFFTKMNELLHKDDTILVKASHGMEFPEIVTRLQE 455


>gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 459

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 219/476 (46%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T   L Q   G    +  Q      ++ ++ DSR +     F A+KG  +D HDF
Sbjct: 1   MISL-TLQQLSQVTDGVLNQVTEQQAANICISDVTTDSRRVGNGSLFIALKGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AV+ GAG ++V+      +  ++ P   V D   A+ KLA   R +S A ++A+TGS
Sbjct: 60  FADAVKAGAGALLVSR-----VLDINFPQVVVKDTRLAMGKLASWVRQQSNARVVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G+ NN IGVPLTL R+    +F + ELG SH+GEI 
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLFRLTEQHEFAVVELGASHVGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   + RP  A++  +  AHL++F  +  IA AK EIF GL + GT  +N + + +   +
Sbjct: 175 YTVEMARPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLSEKGTAIINMESNDWAHWQ 234

Query: 237 AKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                +G KT+  F   ++  ADF     +     +   +     S E+     G H   
Sbjct: 235 ---QVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVA 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A +      LS      GR      A  +    L+D++YNAN  SM 
Sbjct: 292 NALAASALAISVGATLQDIRLGLSELKAVPGRLFPINLAEGK---LLLDDTYNANVGSMT 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+ VLSQ+     G R+ V+GD+  +GE S  +H  + E ++   I+ V+  G   + +
Sbjct: 349 VAVQVLSQMP----GYRVLVVGDIGALGEQSADYHRQIGETVASCGINSVFSVGKLSIHV 404

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
            +A   S    +      L   +   L    V  V+VK S +     +++ L E F
Sbjct: 405 SEA---SGCGQHFADKAALIATLVPLLQQHKVFSVLVKGSRNTTMEDVVHALQESF 457


>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 223/471 (47%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  +L  A  G  I        + I IDSR +     F  I G + D H F+   
Sbjct: 8   MNE-TTVKELAAATGGELISGNENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAV 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              G  + + +   +      +I    VDD   AL  L    R +    ++ +TGSVGKT
Sbjct: 67  YNSGCKVAISSKKDIFLKKDFNI--VLVDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+EM+ +ALS + K +    ++N+ +GVP+TL+R+  D + G+ ELGMS   E+  +  
Sbjct: 125 TTREMVALALSDL-KVFKTPNNFNSQVGVPITLSRI-KDEEIGVIELGMSKFDEMEKIAK 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V    A++T I  AH+ N    E I + K  I +G+++   +FLN D+        +  
Sbjct: 183 IVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADNDLLNNSPKREG 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I   +S   +K+ ++        +        ++GK++ V  +  G H   N L  L
Sbjct: 243 I--IYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVHLNVFGEHQISNALAAL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       +++A K L  F    G   R    + +G  T+ID++YNA+P SMKA+IS+L
Sbjct: 301 AVADHYNLSIESAAKHLEDF---RGFSHRQELII-RGGLTVIDDTYNASPDSMKASISIL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALP 419
              +     R+IA+L DM E+GE  ++ H ++ + ++    +  V+  G     +   + 
Sbjct: 357 KGFNAK---RKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGELAKEIISNIN 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL--EEF 468
            ++     E  + L  FI+  L DGDV ++K SNS   + ++  +   E+F
Sbjct: 414 ENVLTKSFEDNETLENFIREYLKDGDVCLLKGSNSMKLFDVVEKIKNYEKF 464


>gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 472

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 139/478 (29%), Positives = 209/478 (43%), Gaps = 27/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    +      V G + IDSR +     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIAGIVGGQPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+           + +P   VDDV+ AL  LA AA  R   T++A+TGS G
Sbjct: 60  RAVEAGAVAVLAARP-------VGVPAIVVDDVVAALGALARAAVERLGTTVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT  R   +    + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQILERKAPTVWTPGSLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AH+  F   E IA AK E+ E L + G   LN DD     + ++
Sbjct: 173 AGLTPPRIGLVLNVGSAHIGEFGSREAIAQAKGELVEVLPEDGAAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++ +AD +    +   +      +       +V     G H   N L
Sbjct: 233 TKA----RVILFGEAPDADVRGENVRLTDDGRPAFALHTPTGCSDVTLRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V     ALS          R          T+++++YNANP SMKAA+
Sbjct: 289 AAAAVAHELGMSVTEIADALSGAGTLSRW--RMEVTERPDGVTVVNDAYNANPESMKAAL 346

Query: 358 SVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L+ +        GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGQEASW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 407 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEKVALALLE 463


>gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
 gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
          Length = 459

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 222/472 (47%), Gaps = 26/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               ++ +A+    +   P  +    V  +  DSR + P   F  IKG   DGH FI  A
Sbjct: 3   MQLSEIARALG---VDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +Q GA   +   D   +  +  +P   V+D L AL KLA     +    ++AITGS GKT
Sbjct: 59  IQAGAVATLWAKDHEDTRPA-DLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M    L++         ++NN IGVP+T+  M  + +  + ELGM   G++ FL+ 
Sbjct: 118 TTKDMTAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSE 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IAVIT I  AH+  F   + IA AK EI +GL++ G    + D+    LL  ++ 
Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEP---LLAERAK 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ ++    FG     D           ++  +  L    +EV    IG +  +N L  +
Sbjct: 235 AVDVEQRM-FGMKNENDVFASDVAGTDTETSFKTNLD-PEVEVKLPIIGEYNVKNALAAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       V  + +AL+ F+  + R +  +    +    ++ + YN+NP + KA ++  
Sbjct: 293 TVGDRYHVGVADSARALADFNLTKNRTEWLK---GRQGERILSDVYNSNPTAAKAVLNSF 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
           +       GRR  VLGDM E+GE +   H  LA+ L+      V+L G H+ AL   L  
Sbjct: 350 AHTKK--TGRRFVVLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVD 407

Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  ++H++ +  +  L   +Q  +   D V++K+S+     +++  L 
Sbjct: 408 EEIYPAEAVHLYDANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK 459


>gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 463

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 173/470 (36%), Positives = 255/470 (54%), Gaps = 16/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    + +A++G +        V  ++ DSR I   + FFA+KG   DGH+++  A
Sbjct: 1   MKALWQSEAIARAVKGTA---SADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA   VV + +         P   VDD   AL  LAVA+R R+   II ITGSVGKT
Sbjct: 58  FKRGAAGAVVMSPVPY-------PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110

Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TKE L +AL  +   K +  + SYNNH+GVPL+LARMP +  FGIFE+GM+H GE+  L
Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A+IT IAPAH + F+    IA AK+EIFEGL   G   + +D  + +LL AK
Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + I SFG  + A  + +   + ++    +   ++ + +         H   N +
Sbjct: 231 AQEKKAE-IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +V  +  D+  A  AL      +GRG+R+   +  G   +IDESYNANPASM A I
Sbjct: 290 AVLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L       + RRI +LGDM E+G+ S ++H  LA+ LS   + HV L G  + AL+++
Sbjct: 350 KALENEPK--DKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEES 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   I     E  D     +   L   D+++VK SNS G   +++ L ++
Sbjct: 408 LAGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSAVVSSLSKK 457


>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
 gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 138/471 (29%), Positives = 209/471 (44%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L +   G   G    G +  ++ D+R       F AIKG  +D HDF+  A
Sbjct: 1   MITL-TLQQLAEITGGTLYG--SDGAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  G   ++V+  +        +    V D   AL +LA   R RS+A I+A+TGS GKT
Sbjct: 58  VTAGCSGLLVSQRLPVE-----VSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN IGVPLTL R+     + + ELG +H  EI + T 
Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDIGVPLTLLRLKPQHQYAVIELGANHQDEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   ++  H
Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQSALH 232

Query: 241 ALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               KT++ F   + A  DF        ++ +   +      ++V     G H   N L 
Sbjct: 233 G---KTVWRFSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A +    + LS      GR      + ++    L+D+SYNAN  SM AA  
Sbjct: 290 ASALALSVGAPLSAVCQGLSTLKAVPGRLFPLALSADK---LLLDDSYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA 
Sbjct: 347 VLAEMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAAIDKVLSTGSLSHGISDA- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467
             S    +      L       L     +  +VK S S    +++ +L E+
Sbjct: 402 --SGVGEHFADKTALGARALELLAQHQQITLLVKGSRSASMEKVVQILQEK 450


>gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 465

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 207/466 (44%), Gaps = 15/466 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +++ +    I     +  + G+ IDSR +     +  I G   +GH ++  A+  G
Sbjct: 5   SIDAIIRMLDADYIENGAIEEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+             + V  V+D   AL  LA A R +    ++ ITGS GKT+TK+
Sbjct: 65  AKAVLWERKEPNPPKE--VVVILVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L     T   +G+YNN IGVPLTL  +  +V+  + E+GM +LGE+ FLTH+V P
Sbjct: 123 ILASLLQEHYITQKTLGNYNNEIGVPLTLLSLSENVEAAVIEMGMENLGELSFLTHMVEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+I+ +  AHL N   +E IA AK EI EGL++ G    N D    +    ++   G 
Sbjct: 183 DIAIISNVGTAHLENLKTMENIAKAKLEIVEGLKEHGLFIYNGDQEILQNAVTQAQIPGH 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I +FG     D+ +    Q  E       L           IG H A N         
Sbjct: 243 IRIRTFGVKPQNDYVISHITQKREGVSF--CLNDDVCPYHVDMIGKHQAMNATAAWIAAK 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   V+   +          R +      + G   ++++SY +NP S  AA+  + +  
Sbjct: 301 ALGLSVEEIREGYQNIEKTGLRNELV----DFGNCLILNDSYKSNPQSALAALDTMEEFD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
                 +IAVLGDM E+G+ S   H  L + L+ Y+++ V   G     +          
Sbjct: 357 VPY---KIAVLGDMLELGDTSDMIHYTLGKDLAKYHLNEVLTIGDMARYITQGAFNNLTG 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +H+ +    + L  +++       +++VK S       +++ L+++
Sbjct: 414 VHIEHFTDKEALICYLRPYEHKDCMLLVKGSRGMKLDEVVDALVKK 459


>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
 gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
          Length = 457

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 207/465 (44%), Gaps = 17/465 (3%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   I   +         + G+SI+SR++ P   F   KG H DGH F+  A++KG
Sbjct: 5   TIAQIAGMIPVLNDHSAFSDISIKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDALRKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+      L +P+  V+D L A+ +L+ A R      +  ITGS GKTT K+
Sbjct: 65  AAAALWQQDVPNP--PLHLPILVVEDTLKAVQQLSEAYRNELDIKVAGITGSNGKTTVKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS   K     G+YNNH+G+PLTL  +  D +  + E+GMS  GEI FLT L RP
Sbjct: 123 MTARLLSLRYKVQKTEGNYNNHLGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-G 243
            + +IT I  +HL +      IA AK EI EGL+  G I  + D+    LLK + +   G
Sbjct: 183 DVVMITNIGESHLQDLGSRAGIAKAKLEIIEGLKDDGMIIYHGDEP---LLKDRLNGYSG 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + SFGK ++      +  Q  + S  +  L    ME     +G H   N L  +   
Sbjct: 240 PAKVRSFGKGQSNSIYPVRIDQEEKGSVFQANLSD--MEYHLPVLGVHNVMNALCAMEAA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   +  +          R   +       +I+++YNA+P SM+AAI ++S++
Sbjct: 298 HFLGIPYEQMNEGFASLKLTA---MRMELSEGCKGEKVINDAYNASPTSMRAAIDLVSEL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           S +    ++ VL DM E+G+    FH ++ + +    I +V   G     + +       
Sbjct: 355 SGYSI--KVLVLADMLELGDDEVRFHREIGQAIDPEKIDYVLTFGSLGRVIAEGAQEVFS 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V        L   +QS      +V+ K S           L 
Sbjct: 413 EERVFAFSEKGPLIEKLQSLTNAETIVLFKGSRGMKLEEAAEALK 457


>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 457

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDVPNPPKDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     ++
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGDAMKAFGDIAEAKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes Clip81459]
 gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 457

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 213/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDVPNPPMDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I  
Sbjct: 353 SSGKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
 gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
          Length = 469

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 213/471 (45%), Gaps = 17/471 (3%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T+ ++  A+   +             I+ D+R I+  + F A++G  +DG DF   A++
Sbjct: 4   MTWDEVQAAVGAAAHNGKLAGNTVFPHITTDTRKISSGDLFVALRGEKFDGADFAAEALE 63

Query: 63  KGAGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +GA  V+V T        ++      V   DD L A   +A A R++    +IAITGS G
Sbjct: 64  RGAAAVIVGTPLSTSAEKALKKAKGTVLKADDGLRAYQAIAHAWRMKFDIPVIAITGSNG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+    LS   K      +YNN +G+PLTL  +  +    + E+GM  LG+I  L
Sbjct: 124 KTTTKELTAAVLSGRGKVCRTAENYNNEVGLPLTLLGIVPEDFAAVVEIGMRGLGQIAAL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I ++T +   H+     IE IA AKAE+ E +   GT+ LN DDS    +  +
Sbjct: 184 APVAAPTIGIVTNVCEVHMELLGSIENIAKAKAELVEAIPSGGTVILNADDSRVAAM--R 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S A     I ++    +AD +    +  ++ S   V    +  E      G H   N L 
Sbjct: 242 SFAADGVRILTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVSNTLA 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L           +     EG   RY    + G +  I+++YNA+P+SM AA+ 
Sbjct: 302 ALAAGFALGLTPQEM---QAGLRNIEGTKMRYETE-SVGAWMFINDAYNASPSSMHAALE 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             + + P   GR+IAVLGDM E+G  ++  H  +    +    + V   G     + +A 
Sbjct: 358 TTAALYP---GRKIAVLGDMLELGAAAEEAHRMIGRRAAELGFAAVVTYGPQARWIHEAA 414

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      ++ET +     ++  L DGD V+ K S      ++I LL  E
Sbjct: 415 EETGCAACFHAETHEEAAQLLRKILSDGDTVLFKGSRGMRMEQVIALLTGE 465


>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 463

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 222/473 (46%), Gaps = 17/473 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ + H ++   +G  I    +  VN IS D+R +  +  F  + G  +DGH FIL A
Sbjct: 1   MIPI-SIHKIITVCKGKMILEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +++GA   +V       +G L+   V  V+D L AL ++    R  S    I +TGS GK
Sbjct: 60  MERGAIGALVQKGQEFPLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L +        G+ NN IG+PLTL  +    + G+ E+GM+ LGEI  L 
Sbjct: 120 TTTKDMIAGILETNFNVLKNEGNLNNQIGLPLTLFNLEPCHEIGVLEMGMNSLGEILSLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+PHIAVIT +  +H+ +    E I +AK EI   L +   + +N DD F + +K +S
Sbjct: 180 KTVQPHIAVITNVGFSHIEHLGSQENILTAKMEITTRLREKDYLLINGDDPFLKTVKEES 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  I +FG   + D          E     +V +Q K         G H   N L+
Sbjct: 240 KTY---RIITFGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLV 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +            K        + R +        G   +I+++YNA+P SMKAAI+
Sbjct: 297 ALWVGLHYQMTPLAIQKGFDRLELSKMRLEIVTY----GDVKVINDAYNASPDSMKAAIT 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DA 417
           VL+Q       R+IA+LGD+ EMG  ++  H  +   ++   + ++   G     +  +A
Sbjct: 353 VLNQ---STGIRKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITVGKSAQWIAREA 409

Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +     H++ + + D     +++ L   DVV+VK S       ++N + E 
Sbjct: 410 VEQGFSQAHIYQTPSNDLAIKVLKTLLSPRDVVLVKGSRGMKMEEIVNFIQER 462


>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
 gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
          Length = 482

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 124/474 (26%), Positives = 204/474 (43%), Gaps = 22/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   +  ++ DSR++ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSATDAAAWMAGAHLVG-PDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  ++    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPLAGALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +     +   A  G+ NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFARAVGEEARLATAGNLNNDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
           + +P +A+I      H      +E +A   A +   L   G      D      +  L +
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A   A G + +  FG    A          ++   ++V             +G H A+N 
Sbjct: 247 A---AAGTRRVLDFGIEGGA-VSAT-VTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L             +   +ALS F P +GR +R           ++D++YNANP S++AA
Sbjct: 302 LAATACSLAAGIAPEVIAQALSAFAPVKGRLQR---KPGVHGGLVVDDTYNANPDSVRAA 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + D
Sbjct: 359 IDALATLPAP----RWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLATGELARHMVD 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 415 AFGSGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
 gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
          Length = 515

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 223/470 (47%), Gaps = 21/470 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + QA+ G       QG    I  D+R I   + F A+ G ++DG+ F+  A+  
Sbjct: 49  IWDCQQIAQAVGGIL---AKQGSPGSICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    +  +          +    V D L AL+KLAV AR R +  ++ ITGS GKTTTK
Sbjct: 106 GCAGAIGRSM----PRDWPVGFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTK 161

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ +AL S+   +   GS NNHIGVPLTL  +P      + E+GM+HLGEI  L+ + +
Sbjct: 162 AMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRICK 221

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+  + PAH+ N   +E++A AK E+F    +     LN DD     +     A+ 
Sbjct: 222 PSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPDAM- 280

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMT 299
              I  FG+S+ +D +L   +  S    ++  LQ +    S        G H+A N    
Sbjct: 281 ---IRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACAA 337

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + + L   +  A +++S F P    G R R         LI+++YNANP SM  A+ +
Sbjct: 338 ACVATSLGVPLKAASESISKFSPV---GMRSRLEAICSDIQLINDAYNANPMSMTVALEI 394

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +    +GR++  LGDM E+G+ ++  H+   +     ++  +  +G       + L 
Sbjct: 395 LASV--ECKGRKVVALGDMLELGDFTRGAHMKAIKCCQELHVDVIGTAGPAFSDALNGLE 452

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V   E    L   + + +  GDVV+VK S       +++ +  +F
Sbjct: 453 LEKCEVVKCENSAALAEELTARITPGDVVLVKGSRGMRMELVVDAIKRKF 502


>gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 455

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 126/446 (28%), Positives = 208/446 (46%), Gaps = 16/446 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SID+RS+ P   F  + G H DGH+ +  A+ K A                 +   
Sbjct: 18  IQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAAALSKEAAAAFWKRGYPNPPEDAVL--I 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            VDD L AL +L+   R +  A II ITGS GKTTTK+++   L +  + +   G+ NNH
Sbjct: 76  FVDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNH 135

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+PLTL ++  D +  + E+GMS  GEI  L+ L +P +A+IT I  AHL      EEI
Sbjct: 136 IGLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEI 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL+  G    N D+   + +  +          SFG+    +      +  
Sbjct: 196 ARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIG 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S    +LQ    E     +G H   N L  +     L    +   +        +  
Sbjct: 256 NDGSSF--RLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQG---LRDVQLS 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G R      +  FT+++++YNA+PA+ KA +S++ Q+  +    +  VL DM E+GEL +
Sbjct: 311 GMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLKGY--RHKYVVLADMLELGELEE 368

Query: 387 SFHIDLAEVLSLYN----ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQS 439
            FH ++  + +       +S ++  G     + +        ++ ++ E    +   ++ 
Sbjct: 369 QFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKE 428

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   DVV+VK+S       ++N LL
Sbjct: 429 VIHPEDVVLVKASRGMKLEDVVNFLL 454


>gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 454

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 208/474 (43%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSEREVAGH------PYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 117 MIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HI V+T I  AHL  F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG    A+  ++  ++  E       +  + +       G + A N ++   
Sbjct: 230 --SQMVIRFG--DGAEIFVKDLQESKESLTFTTNVIDRPIT--LPVPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    D  ++A       E    R           ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAISDDDIVEA---LETIELTRNRTEWKKAANGADILSDVYNANPTAMRLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I  +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     + 
Sbjct: 341 KIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQM 400

Query: 422 I---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V+Y       +  D +   +Q  L   D +++K SNS    +++  L E
Sbjct: 401 FPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQILLKGSNSMQLAKVVEALEE 454


>gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 451

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 216/465 (46%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS+++     F  I     +GH+++  A+  
Sbjct: 1   MNLKKLEEVVNGEGLQESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 118 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERDTEFLILEMGMSEKGQIRNLSRIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      EEIA AK EI +GL   G    N D+    LL    + L 
Sbjct: 178 PDVAVITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLFLYNGDEP---LLSQNINMLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I++  SFG     D      +        +  L    ++      G H   N ++ + + 
Sbjct: 235 IES-KSFGGKYTNDLFPTNVQLDEYGVHFK--LNNTKIQYDIPLHGKHNILNAIVGIAVG 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 292 QFYKVSTEKIQEA---LQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + +   +++ V+GDM E+G+  +++H ++ ++L+  +I +V+  G     + +   ++  
Sbjct: 349 NAYK--KKMIVIGDMLELGKKGETYHREIGKMLNEKSIQYVFTYGELAKIVAEEARKNYD 406

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 407 AGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIVQKWI 451


>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
 gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
          Length = 453

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 209/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    +    
Sbjct: 185 DFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPNAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLCFGDFSKNIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|33603177|ref|NP_890737.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella bronchiseptica RB50]
 gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella bronchiseptica RB50]
          Length = 945

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 124/488 (25%), Positives = 204/488 (41%), Gaps = 42/488 (8%)

Query: 1   MNPLWTF------------HDLLQAIQGHSIGIVPQGFVN---------GISIDSRSIAP 39
           M  LW+             H+  Q I G  +    + +            +S D+R I  
Sbjct: 460 MQTLWSAAPDDVILLAGKGHETYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDTRRIGR 519

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            E F A+ G ++DGHD++  A   GA   VV       +  +++P   + D L AL ++ 
Sbjct: 520 GELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLGDTLAALGRMG 575

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARM 156
            A R      ++A+TGS GKTTTKEM++  L+         A  G++NN IGVPLTL R+
Sbjct: 576 TAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRL 635

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +FELGM+H GEI  L  +  P +A++T     H      +E +A     +   
Sbjct: 636 RARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAVAHENGAVISA 695

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L + G      D+ +  +        G + +  FG     D    +    +  +   +  
Sbjct: 696 LPEDGVAVYPGDEPYAAIW---DKLAGARRVLRFGLQPGLDVYAERVVTQAHGTQCGLVT 752

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E+     G H  +N L  +       A + T I AL+ F    GR +  + +   
Sbjct: 753 PAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGRMQHRQMS--- 809

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LID++YNANP S +AAI VL+++       R  VLGDM E+G+   + H ++ +  
Sbjct: 810 DGTVLIDDTYNANPDSARAAIDVLARLPAP----RALVLGDMGEVGDNGPAMHREVGDYA 865

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             + I  +   G        A   +       ++D +   ++  L     +++K S    
Sbjct: 866 REHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS-ILIKGSRFMR 921

Query: 457 FYRLINLL 464
             R++   
Sbjct: 922 MERVVTAF 929



 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 168/453 (37%), Gaps = 41/453 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFGVD 89
           +DSR I P + F A  G   DG  F+  A+ +GA  ++  T+   VA  G+ ++PV  + 
Sbjct: 34  LDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQLR 93

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            +LGAL       R     +++AITG+ GKT+  + L   L+ + K    IG+    +  
Sbjct: 94  TLLGALADEW-YGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALLPD 152

Query: 150 PLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             +L       D                    L  S +G  +     +R  +A  T +  
Sbjct: 153 GQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTR 212

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     ++    AKA +F+         +N DD   E L A   A  +KT YS  +  
Sbjct: 213 DHLDYHGTMQRYEQAKAALFQW-PDLQAAVVNADDPAGERLLASLPA-ALKTGYSL-QGA 269

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            AD   R  +  +      + L     ++V   +G H   N+L+  G +S L   +    
Sbjct: 270 PADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGWPLPQIA 329

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           + L+   P +GR +       +         L+   Y   P ++  A++ L  ++    G
Sbjct: 330 RELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPVAQARGG 389

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           R + V G     GE       ++  +        V ++  +  +         +   +P 
Sbjct: 390 RLVCVFGC---GGERDPGKRPEMGRIAVER-ADRVVVTSDNPRSESPQDIIDQILAGIPA 445

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +    S    DV+++  K 
Sbjct: 446 GMRAAVQPDRALAIMQTLWSAAPDDVILLAGKG 478


>gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 454

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 218/460 (47%), Gaps = 18/460 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            + L + + G  +        + G+ IDS+ I     F  I     DGHD++  A++KGA
Sbjct: 6   LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +             IP+  VDD L AL K+A   R  S   +I ITGS GKT  K++
Sbjct: 65  AASLWKKSYGDPPKG--IPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKDI 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  LS+  + +   G+ N+ IG+PLT+  M  D +F I E+GMS  G+IR L  + +P 
Sbjct: 123 ISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LGI+
Sbjct: 183 VAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEP---LLSQNINMLGIE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG     D      +        ++      ++      G H   N ++ + +   
Sbjct: 240 G-KSFGGKYTNDLFPTNVQLDEYGVHFKLNHS--KIQYDVPLHGKHNIFNTIVGIAVGQF 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   +A            R++    +  FT+I++++NA+P+SMKAAI  L +++ 
Sbjct: 297 YKVPIEKIQEA---LQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNA 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-- 423
           +   ++I V+GDM E+G+ ++++H ++ E+L+  +I +V+  G     + +   ++ H  
Sbjct: 354 YK--KKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHTG 411

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   +    +   +   +   DVV++K S       ++ 
Sbjct: 412 KIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451


>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
 gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
          Length = 457

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 204/469 (43%), Gaps = 15/469 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             ++T  +++ A     +         + I  D+R+I     F A++G  +DGHDFI  A
Sbjct: 1   MAMFTDGEIVLATGARILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  G   V+V+ D           +F V + L A   LA+  R R    ++A+TGSVGKT
Sbjct: 61  VSLGTTAVIVD-DAGRLYPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T+ ++   LS          ++NN IG+P TL ++  +    + E+GM  LG+I+ L  
Sbjct: 120 STRSLIATVLSQKYNVLQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGLGQIKELAD 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P I V+T +  +H+        IA AK E+ E L   GT  LN DD     +  K  
Sbjct: 180 IAEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRVAAMAEKCK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG  +NA       K   +      +   + M+V    +G H   N L  +
Sbjct: 240 G----KTVSFGIKENAPVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVYNALAAV 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L        K L+ +     R +           T I+++YNANPASM  A+  L
Sbjct: 296 AVGRLLGMSEHQMQKGLAEYKGVPMRQELIHLE----DLTFINDAYNANPASMAEAVHTL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             ++    GR+IAVLG M E+G+ +++ H  +  +L+      +   G     + D   +
Sbjct: 352 MSVAS---GRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGDEATYIADGAEQ 408

Query: 421 S--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +V+   T       ++   V GD +++K S      +++     +
Sbjct: 409 KGMKNVYKVRTHKEGAEILRKIAVAGDTILLKGSRGFAMEKILPYFERK 457


>gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 452

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 211/465 (45%), Gaps = 23/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V+D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLACD-----LPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A    +G 
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGD 233

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++ F  +  N+DF     +  S  +   +Q    +++V+    G H   N L    + 
Sbjct: 234 RKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + AD+      L+      GR    R   +Q    L+D+SYNAN  SM AA+ VLS++
Sbjct: 294 MAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S  
Sbjct: 351 P----GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRA---SGV 403

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
             +      +   ++  L +     ++VK S S     ++  L +
Sbjct: 404 GEHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQD 448


>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
 gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
          Length = 453

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 212/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+IR L  +  P
Sbjct: 125 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIRELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N +   +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L+       R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLNNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVIKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  +  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--KNKEELINDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 472

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 142/466 (30%), Positives = 229/466 (49%), Gaps = 14/466 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             D+++A+       + +   V G+  DSR + P + F  + G   DGHD+I  A++ GA
Sbjct: 6   LMDVVKAVHAIDYTALDRFISVTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQAIKNGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + + +   +  +  I +  VDD L A+  LA   R      +I ITGS GKTTTK+M
Sbjct: 66  VATLWSKE-AQAAPADQIAIVLVDDTLVAMQALANYYRNSLNPKVIGITGSNGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L +  K +   G+YNN IG+P TL +MP D    + E+GMS  GEI  L+ + +P 
Sbjct: 125 TANVLKAKYKVHKTEGNYNNEIGLPYTLLQMPADTQVVVCEMGMSDFGEIEVLSKIAQPD 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +HL        IA AK EI +GL++ G      ++    LL+    ALG +
Sbjct: 185 IAVITLIGESHLEFLGSRANIAKAKLEILKGLKEDGLFIYPANEP---LLQEAGQALGDR 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG    ADF     K+   +++    +  + +      +G +   N ++ L +   
Sbjct: 242 A-RSFGLDNTADFYAYDLKEDKNKTYFHTNIDDQVL-CSIPVMGAYNVGNAMIALTVAQE 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++ AI  LS F   + R +    +      ++++++YNA+P S+KA +   SQ+  
Sbjct: 300 LKVPIEQAIFQLSQFKLTKNRLEWLTAS---NGASILNDAYNASPTSIKAVLKSFSQVET 356

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
             EGRR+  LGD+ E+G  S ++H  L++ +    I+ V+L G  +  L  AL       
Sbjct: 357 QAEGRRLVALGDVKELGPESANYHAALSQEIDPKKIAKVYLLGPQMQHLYQALQAKFPKQ 416

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++Y+E     L   IQ+ L   D ++VKSS       ++  L+ E
Sbjct: 417 ALYYTENDHKALVATIQADLQVQDHLLVKSSLGTDMLYVVGKLIGE 462


>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 456

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 212/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 8   NLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKGA 67

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 68  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 128 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  +    
Sbjct: 188 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGSLPSAEY---- 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 244 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L+       R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 303 ELGVSFEEMKRGLNNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 358 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 415

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 416 Y--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 456


>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 451

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 196/461 (42%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G+SIDSR I  Q  F   KG H DGH ++  A++ GA
Sbjct: 5   TLEQIKTWIPCEIENEFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++  P+  VDD L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQKGEPLD-ENIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G+YNN IG+PLT+ ++ +D +  I E+GMS   EI  L+ L +P 
Sbjct: 124 IESVLKPQFKVKKTQGNYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ +    E IA AK+EI  GL+  G    + D+   E    +     + 
Sbjct: 184 IAIITNIGESHMQDLGSREGIAKAKSEITLGLKPGGLFIYDGDEPLLEPYANEIQNADL- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFGK+ +                  +             +G H  +N  + + +   
Sbjct: 243 --VSFGKNSDNTLVSTIETIKDHGIAFTINHDE---HYELPILGEHNMKNATIAIAVGKR 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     T     +        G R      +    +I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LNLTYQTI---FNNLKNVVLTGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTLSGM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV- 424
             EGR+I VLGD+ E+G  SQ  H  +       +I  ++  G     +       +   
Sbjct: 353 --EGRKIIVLGDVLELGPDSQIMHEAVGLYFEDKDIDALFTLGNEAAHISHTGKAFVKKS 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +    L   ++  +   D V+VK S       ++  L+
Sbjct: 411 EAFKEKADLIRSLKGYVQANDKVLVKGSRGMKLEEVVEALI 451


>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 460

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 218/460 (47%), Gaps = 18/460 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            + L + + G  +        + G+ IDS+ I     F  I     DGHD++  A++KGA
Sbjct: 12  LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGA 70

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +             IP+  VDD L AL K+A   R  S   +I ITGS GKT  K++
Sbjct: 71  AASLWKKSYGDPPKG--IPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKDI 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  LS+  + +   G+ N+ IG+PLT+  M  D +F I E+GMS  G+IR L  + +P 
Sbjct: 129 ISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQPD 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LGI+
Sbjct: 189 VAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEP---LLSQNINMLGIE 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG     D      +        ++      ++      G H   N ++ + +   
Sbjct: 246 G-KSFGGKYTNDLFPTNVQLDEYGVHFKLNHS--KIQYDVPLHGKHNIFNTIVGIAVGQF 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   +A            R++    +  FT+I++++NA+P+SMKAAI  L +++ 
Sbjct: 303 YKVPIEKIQEA---LQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNA 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-- 423
           +   ++I V+GDM E+G+ ++++H ++ E+L+  +I +V+  G     + +   ++ H  
Sbjct: 360 YK--KKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHTG 417

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   +    +   +   +   DVV++K S       ++ 
Sbjct: 418 KIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 457


>gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
 gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC 49946]
 gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
          Length = 452

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 212/465 (45%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q   G   G      +  ++ D+R  A    F A+KG  +D HDF+  A+  G 
Sbjct: 5   TLQQVAQLTGGTLHGD--DRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGC 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +        +P   V D   AL +LA   R +S A I+A+TGS GKT+ KEM
Sbjct: 63  SALLVSKRLPVE-----LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +T    G++NN IGVPLTL R+  +  + + ELG +H GEI + + LVRP 
Sbjct: 118 TAAILRECGETLYTTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSGLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   HA   K
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQQALHA---K 234

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T++ F  +  ++DF        ++ +   +      ++V+    G H   N L    +  
Sbjct: 235 TVWRFSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNIANALAASALAL 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + LS      GR      + ++    L+D+SYNAN  SM AA  VL+ + 
Sbjct: 295 SVGAPLSAVRQGLSTLKAVPGRLFPLALSADK---LLLDDSYNANVGSMTAAAQVLAGMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   S   
Sbjct: 352 ----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGSLSHGISDA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            +      L +     L       ++VK S S    +++ +L E+
Sbjct: 405 EHFADKAALGVRALELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 458

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 219/469 (46%), Gaps = 22/469 (4%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  +L+Q   G  +         +  I  DSR    +  F  + G  +DGHD+I      
Sbjct: 4   SIQELVQETGGICLNSEDSGNTVIEEIFTDSRQKVNKGLFVPLIGEKFDGHDYIDDVKAM 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + +    +    L      V+D   AL  +A     +    IIAITGSVGKTTTK
Sbjct: 64  GALATLTSKKNDSVHQDLI--TIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L +  K +  +G+YNN IGVP T+  +  D    + E+GM+H GE+  LT +V+
Sbjct: 122 EMVAAVLETTLKVHKTVGNYNNEIGVPKTMFALSEDDQVSVIEMGMNHFGELSRLTSVVK 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  AH+ +    E I  AK EI EGL+  GT+ +N D+      K  +    
Sbjct: 182 PDFAVITNIGTAHIEHLESREGILKAKLEILEGLKPEGTVIINGDEPLLMGKKQDNW--- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG     D+ +         +   V       ++     G HMA N L+ + I 
Sbjct: 239 ----ITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPSPGVHMALNALIAIIIA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D  IK ++ +  ++ R        N G FT+ID++YNAN  SM AA+ VL   
Sbjct: 295 EKLEIPRDKIIKGIANYKSEKMRMN----ITNVGNFTVIDDTYNANYDSMVAAMKVLGNY 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PR 420
               + R+IA+LGD+ E+G+ S+S H +L E ++   I+ V+  G     + DA+   P 
Sbjct: 351 --LTKNRKIAILGDIFELGKYSESIHRNLGEYIASSRINCVFTIGDAAAYITDAIINSPN 408

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +V   + +  +         +  GD+V+VK+S       ++  + ++
Sbjct: 409 NKNVTSKHFKNKELFIKEWSQYINAGDIVLVKASRGMHLEEVVKAMRKD 457


>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
          Length = 460

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 219/465 (47%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I   + DGH+++  A+  
Sbjct: 10  MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMN-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LG
Sbjct: 187 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I++  SFG     D      +        ++      ++      G H   N ++ + + 
Sbjct: 244 IES-KSFGGKYTNDLFPTNVQLDEYGVHFKLNHS--KIQYDVPLHGKHNIFNTIVGIAVG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NANP+SMKAAI  L ++
Sbjct: 301 QFYKVSTEKIQEA---LQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H
Sbjct: 358 NAYK--KKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 415

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 416 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQKWI 460


>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
           Clip11262]
 gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           innocua Clip11262]
          Length = 457

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 213/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V++ L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDVPNPPTDF--PVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS  A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 353 SKGKP-KYLVLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQ 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVQHFDTKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 455


>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens str. 13]
 gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
           perfringens str. 13]
          Length = 453

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 210/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGNFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
          Length = 453

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 210/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate
           [Bacillus cereus Q1]
 gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus Q1]
          Length = 451

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 218/465 (46%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 1   MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 118 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LG
Sbjct: 178 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLG 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I++  SFG     D      +        ++      ++      G H   N ++ + + 
Sbjct: 235 IES-KSFGGKYTNDLFPTNVQLDEYGVHFKLNHS--KIQYDVPLHGKHNIFNTIVGIAVG 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NANP+SMKAAI  L ++
Sbjct: 292 QFYKVSTEKIQEA---LQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H
Sbjct: 349 NAYK--KKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 406

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 407 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQKWI 451


>gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
 gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
          Length = 473

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 137/478 (28%), Positives = 212/478 (44%), Gaps = 27/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P+  V G +  DSR++     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  V+           L +P   VDDV  AL  LA     R   T+IA+TGS G
Sbjct: 60  GAVGAGAVAVLATRP-------LGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   LS    T    G+ NN IG+PLT  R+  D    + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTRDTRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L ++G   LN DD     +  +
Sbjct: 173 TSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++ +A+ +               ++      EV     G H   N L
Sbjct: 233 TRA----RVLLFGEADDAEVRAENVTLTDTGRPRFLLRTPTGCGEVTLRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L    +     L+          R          T+++++YNA+P S++AA+
Sbjct: 289 AAAAVAHELGMPAEEIALGLNEARSLSRW--RMEVTERPDGVTIVNDAYNASPDSVRAAL 346

Query: 358 SVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L  +   +    GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+T       ++  L  GDVV+VK+S + G  ++   LLE
Sbjct: 407 LRMGAYNEGSWGEESVHVSDT-QAAIDLLRGELRPGDVVLVKASRAAGLEKVAQALLE 463


>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Mississippi]
          Length = 456

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 155/455 (34%), Positives = 241/455 (52%), Gaps = 7/455 (1%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
            A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  KGA   VV 
Sbjct: 3   AAVRGLCLGKD-WTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV- 60

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            D V+   +   P+  V D L AL+ +A      ++A +IAITGS GKTTTK +L+ ALS
Sbjct: 61  -DEVSVPTADCGPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALS 119

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + RP +AVIT 
Sbjct: 120 KYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITN 179

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +     I SFG
Sbjct: 180 VGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY-CARIISFG 238

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               AD Q+ + ++ S    +  +  G+ ++        H+A ++ +T  +    + D+ 
Sbjct: 239 VGAGADVQIFRREEPSNP--VTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAFSIDLT 296

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A  A+  F P EG  K +          L+D++YNANP SM AAI  LS ++     RR
Sbjct: 297 QARGAMEEFVPLEG-SKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRR 355

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           +A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ +   +     
Sbjct: 356 VAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLRGGHFADHG 415

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++  +  GD V+VK S +     ++  LLE
Sbjct: 416 EALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 450


>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 453

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 211/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPSAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLILGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
 gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
          Length = 452

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 211/465 (45%), Gaps = 23/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLACD-----LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A    +G 
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGD 233

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++ F  +  N+DF     +  S  +   +Q    +++V+    G H   N L    + 
Sbjct: 234 RKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + AD+      L+      GR    R   +Q    L+D+SYNAN  SM AA+ VLS++
Sbjct: 294 MAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  V+GDM E+G  S + H ++ EV     +  V   G     +  A   S  
Sbjct: 351 P----GFRAMVVGDMAELGAESAACHREVGEVAKAAGLDCVLSVGTLSADISRA---SGV 403

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
             +      +   ++  L +     ++VK S S     ++  L E
Sbjct: 404 GEHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
          Length = 460

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 218/465 (46%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LG
Sbjct: 187 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I++  SFG     D      +        ++      ++      G H   N ++ + + 
Sbjct: 244 IES-KSFGGKYTNDLFPTNVQLDEYGVHFKLNHS--KIQYDVPLHGKHNIFNTIVGIAVG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A            R++    +  FT+I++++NANP+SMKAAI  L ++
Sbjct: 301 QFYKVSTEKIQEA---LQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           + +   +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ H
Sbjct: 358 NAYK--KKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 415

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V   +    +   +   +   DVV++K S       ++   +
Sbjct: 416 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQKWI 460


>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
          Length = 453

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 210/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 453

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 211/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLVVCGNDDFLGALPSAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
 gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
          Length = 465

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 198/459 (43%), Positives = 264/459 (57%), Gaps = 2/459 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A++    G +P   +NGISIDSR+IAP EA+FAIKG  +DGH F+  A++ GA L V
Sbjct: 1   MAAAMRADRRGALPAA-INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V         +   P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+TKE L   
Sbjct: 60  VEAAQRDQFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSV 118

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + +  KT+A + S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  +VRPH+AVI
Sbjct: 119 VDAQGKTHASVASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEITPLVKMVRPHVAVI 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+ P HL  F+GIE IA AKAEIFEG+E  G + LN D++ F  L  ++  LGI  I S
Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGAVVLNRDNAQFARLHGRAKKLGIARIVS 238

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG  + AD +L         S +  ++ G  +       G H+A N L  L   S+  AD
Sbjct: 239 FGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGAD 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  A  ALS   P  GRG R   A+  G   LIDESYNANPASM AA+ VL        G
Sbjct: 299 LALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKLG 358

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           RRIAVLGDM E+G  S   H  LAE ++   +  ++  G  +  L +AL       Y+E 
Sbjct: 359 RRIAVLGDMLELGPKSADLHRGLAEAINANAVDMIFCCGPLMRNLWNALSSGKRGGYAED 418

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              L   + +++  GDV++VK S       +++ L + F
Sbjct: 419 SVALESQVTAAIRSGDVIMVKGSLGSRMKVIVSALEKRF 457


>gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
 gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
          Length = 453

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 213/471 (45%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ + + L     G   G      V  +  D+R +     F A+ G  +D HDF+  A
Sbjct: 1   MIPI-SLNTLATVSGGKLYG--SDITVGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +  ++  +      V D   A  +L    R ++KA ++A+TGS GKT
Sbjct: 58  IASGAQALLVSKHLPVAVPQV-----VVADTRIAFGQLGAWVRQQAKARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  D D+ + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDFGVPMTLLRLTKDHDYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D +     + +  
Sbjct: 173 LTRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFAGLPAHGTAIINADSNDLANWQPQ-- 230

Query: 241 ALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  KT++ F     A  +F     +  ++ +   +      + +     G H   N L 
Sbjct: 231 -LVGKTLWRFSPQPQAEVEFGASDIQLRADATSFTLHTPRGDIAITLPLPGRHNIANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A +      L+   P  GR    R A +Q    LID+SYNAN  SM AA  
Sbjct: 290 AAALALSVDAPLSAIQAGLTKLQPVPGRLFPVRLAEHQ---LLIDDSYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL  +     G R+ V+GDM E+G+ +++ H  + E      I  V  +G     + D  
Sbjct: 347 VLGDMP----GYRVMVVGDMAELGDEAEACHRQVGEAAKAAGIDCVLSTGSLSQLISD-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
             S +  +      L   +++ L +     +++K S S    +++  L E+
Sbjct: 401 -NSGNGEHFANKAALIERLRTLLSEHQEITILIKGSRSAAMEQVVQSLQEK 450


>gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
 gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
          Length = 458

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 16/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  +   +  ++ G      P+  V  +  DSR + P + FFA+ G  +DGH+FI   
Sbjct: 1   MEPR-SLTYVAASMLGELRAGSPETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG   VV     +         V  VD+   AL +LA   R   +  IIA+ GS GKT
Sbjct: 60  ASKGVAAVVAERTRMTGKMPECG-VIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE+L   L     T     S+NN IGVP TL R+       + E+G +H GE+  L  
Sbjct: 119 STKELLAGVLKKRLNTLWSEASFNNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVS 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   +IT+I   HL  F  +  +A  +  + E L   G +FLN D  + + +  ++ 
Sbjct: 179 MIQPKFGIITSIGREHLEFFGDVAGVADEEGWLAELLPADGKLFLNGDSDWTKQIARRTR 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLM 298
           A    T+   G     D+++   K   +    +V    KS+  +     +G H A N   
Sbjct: 239 A----TVVRVGFGAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATF 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L + + L    D   + LS     + R +      N     +ID++YNAN  SM AA++
Sbjct: 295 ALAVGAELGLTRDHLEQGLSDCKSAKMRLQL----SNWNGICVIDDAYNANADSMLAALN 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L ++     GRR+AVLGDM E+G  S++ H ++   ++   ++ ++  G    A+  + 
Sbjct: 351 TLQEMP--CVGRRVAVLGDMAELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSA 408

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +        + +      +++ L  GDVV++K+S S    RL  +L 
Sbjct: 409 RDAGLAEASEFDDVPAAAAAVKNFLKAGDVVLLKASRSTRLERLFEMLK 457


>gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
 gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
          Length = 455

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 140/465 (30%), Positives = 222/465 (47%), Gaps = 21/465 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  ++ + + G  +G      +  +S DSR++  +  F A+KG ++DGH+F+  A
Sbjct: 1   MIKL-SLTEIAEHLGGKLLGD--DFSIEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA  V+V  ++  +     +    VD+   A+  +    R +     +A+TGS GKT
Sbjct: 58  AENGARAVLVERELPDA-----VAQIIVDNSQRAMGDIGAYVREKLAPVCVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   +     G++NN IGVPLTL R+     FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQQHQVLYTAGNFNNEIGVPLTLLRLQAGDQFGVFELGANHAGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +  +A AK+EIF  +   G   +N DD+F  ++ A S 
Sbjct: 173 LVKPSVAMVNNVASAHLEGFGSLAGVAKAKSEIFNHVATDGIAVINADDAFAAVMLAASQ 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L   T  +F     AD +           +  ++    +   VV    G H   N L  
Sbjct: 233 HL---TQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESVVLPLAGRHQVLNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I   L   +    + LS+  P +GR    R     G  T+ID+SYNANPAS+ AAI  
Sbjct: 290 SSICLALGMSLSFINQGLSLLEPVKGRMLPTRL----GRVTVIDDSYNANPASVGAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +IS    G R  VLGD+ E+G+ +   H +L        +  ++  G        A  
Sbjct: 346 LQEIS----GNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFCVGELSEGASHAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + H +  E ++ L  +I  S      ++VK S S    R++  L
Sbjct: 402 AAHHRNIDELVEKLMTYINES-NADITILVKGSRSARMERVVEAL 445


>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 453

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 210/463 (45%), Gaps = 15/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A  KGA
Sbjct: 5   NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 65  KIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L  +  P
Sbjct: 125 LVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIASP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    +    
Sbjct: 185 DLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEY---- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G  +N     +        S   V    K  E      G H   N+++ + I  
Sbjct: 241 -KIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L        R +  +    +  F+++++ YN++P ++K+AI V+  I 
Sbjct: 300 ELGVSFEEMKRGLKNIEATSMRLELIK----KDGFSILNDCYNSSPVAVKSAIDVMKNI- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+       V
Sbjct: 355 --EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGCTV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 413 Y--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 216/464 (46%), Gaps = 20/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + I G  I    +  V+G+ IDSR    +  FFA+ G   +GHDF L A + GA 
Sbjct: 6   IDTLSKMINGKIIRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGAC 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VVV  ++  +          V+D L AL  +A + + R     +A+TGS GKTTTK+M 
Sbjct: 66  AVVVKREIEGADCF----QIKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMT 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   KT   IG++N+  GVPLTL  +    +  + E+GM+H GEI  ++ LV P +
Sbjct: 122 ASVLSKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISELVEPDL 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT +   H+ N    E I  AK EI +GL+K GT+ +N DD FF     K +      
Sbjct: 182 AMITNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFF-----KDYTNDEFN 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G +   DF+       S+ +   V   GK+          +   N L  +      
Sbjct: 237 VVKVGINHG-DFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFHF 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   + L  F P   R K           TLID++YN+NP ++K A+ +L++I  +
Sbjct: 296 GLNYEQIKEGLDDFMPTGNRMKIEEV----NGITLIDDTYNSNPEALKEALGLLNRIGGN 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----I 422
              R++AVLGDM E+GE S+  H    +  +   +  +   G + +        +     
Sbjct: 352 N--RKVAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIKGAGENGMDPG 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              Y    + L   +   L +GD V+VK+S    F  +++ + +
Sbjct: 410 KALYFFEKNYLVEEVFDFLKEGDFVLVKASRGMKFEDVVDAIKK 453


>gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
 gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
          Length = 465

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/480 (28%), Positives = 215/480 (44%), Gaps = 33/480 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +   G   G        V  I+ DSR ++    F AIKG   DGH FI 
Sbjct: 1   MKNL-TLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +   GA   +       +       V  V   L A+  +A     +  A ++ I GSVG
Sbjct: 60  GSFADGALAALA----EVAPAETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   L+   +T    G++NN +GVPLT  RM  + + G+ E+G++H GE+  L
Sbjct: 116 KTSTKEMVAAVLAQKYRTLKTEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP   V T +  AHL      + I  AK+E+F+ +++ G + +N DD     L   
Sbjct: 176 AKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDEKGHVIVNGDDD---KLSTI 232

Query: 239 SHALGIKTIYSFGKSKN-----ADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHM 292
           S   G+  +  FG  +       D           E     +  +  S EV+    G HM
Sbjct: 233 SEVHGVAPV-RFGIGEQGYSHPNDVWADGIVSHGLEGISCVIHTEAGSFEVMIPSSGRHM 291

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    +  +    ++     +  + P  GR    +       +T+ID+ YNANP S
Sbjct: 292 IYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHIIK----GDSYTVIDDCYNANPGS 347

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           MKA+IS+L +      GRR+A+LGDM E+GE  +++H ++    +   I  +   G    
Sbjct: 348 MKASISILKEA----LGRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLICCVGALSE 403

Query: 413 ALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A+  A              V +  T++ L       L   D ++VK+S++ GF R+++ L
Sbjct: 404 AMAKAAVDYMETHPEAHCLVRHYPTVEALMDDCGEILEKNDTILVKASHAMGFGRIVSGL 463


>gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 452

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 218/465 (46%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G       + +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTFDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
 gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
          Length = 466

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 215/474 (45%), Gaps = 26/474 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  Q +     G        G+S DSR++   E F A+ G  +DG  F+ +A +K
Sbjct: 1   MMMVDEAAQVLHVDWSG--SNVRFTGVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   ++  D   +  S   PV  V D    L +LA   R R    +I +TGS GKTTTK
Sbjct: 59  GAVAAMLQKDAEPAGLSGDFPVIRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTK 118

Query: 124 EMLTIALS-----------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           EM+   L              ++  A  G+ NN IGVP  L R+     + + E+GM+HL
Sbjct: 119 EMIAAILRVAASDNAIINDPAERVLATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHL 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI +LT L RP+IAVIT    AH+     +E +A AKAEI  GL+++GT   N DD + 
Sbjct: 179 GEIAYLTRLARPNIAVITNAGAAHIEGLGSVEAVARAKAEILVGLDQSGTAIFNADDRYA 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            L +  +   G + I  FG ++ A      ++     + ++++L   ++EV     G H 
Sbjct: 239 SLWRECA---GAREIIDFGLTEKARVSAV-YRLGRLVNTLQLRLPDATVEVKLQAPGVHN 294

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    +   L    +  +  L  F    G   R +         LID++YNANP S
Sbjct: 295 IYNALAAAAVAWSLGIKKEWIVAGLERFQSVHG---RLQKKCGLHHAVLIDDTYNANPES 351

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++AA      +    EG++I VLGDM E+G+L+   H  +        +  +   G    
Sbjct: 352 VRAA----LAVLAAAEGKKILVLGDMGELGQLAIDLHRTIGRDARKAGLDQLLTLGKLSA 407

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +   +     +  ++D L    +S L D   ++VK S      R++  L +
Sbjct: 408 YAAEEFGKGAR--HFNSIDELLKVAKSLLADDVTLLVKGSRFMQMERVVRQLEQ 459


>gi|33598266|ref|NP_885909.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella parapertussis 12822]
 gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella parapertussis]
          Length = 945

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/488 (25%), Positives = 204/488 (41%), Gaps = 42/488 (8%)

Query: 1   MNPLWTF------------HDLLQAIQGHSIGIVPQGFVN---------GISIDSRSIAP 39
           M  LW+             H+  Q I G  +    + +            +S D+R I  
Sbjct: 460 MQTLWSAAPDDVILLAGKGHETYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDTRRIGR 519

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            E F A+ G ++DGHD++  A   GA   VV       +  +++P   + D L AL ++ 
Sbjct: 520 GELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLGDTLAALGRMG 575

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARM 156
            A R      ++A+TGS GKTTTKEM++  L+         A  G++NN IGVPLTL R+
Sbjct: 576 TAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRL 635

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +FELGM+H GEI  L  +  P +A++T     H      +E +A     +   
Sbjct: 636 RARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAVAHENGAVIGA 695

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L + G      D+ +  +        G + +  FG     D    +    +  +   +  
Sbjct: 696 LPEDGVAVYPGDEPYAAIW---DKLAGARRVLRFGLQPGLDVYAERVVTQAHGTQCGLVT 752

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E+     G H  +N L  +       A + T I AL+ F    GR +  + +   
Sbjct: 753 PAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGRMQHRQMS--- 809

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LID++YNANP S +AAI VL+++       R  VLGDM E+G+   + H ++ +  
Sbjct: 810 DGTVLIDDTYNANPDSARAAIDVLARLPAP----RALVLGDMGEVGDNGPAMHREVGDYA 865

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             + I  +   G        A   +       ++D +   ++  L     +++K S    
Sbjct: 866 REHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS-ILIKGSRFMR 921

Query: 457 FYRLINLL 464
             R++   
Sbjct: 922 MERVVTAF 929



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 168/453 (37%), Gaps = 41/453 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFGVD 89
           +DSR I P + F A  G   DG  F+  A+ +GA  ++  T+   VA  G+ ++PV  + 
Sbjct: 34  LDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQLR 93

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            +LGAL       R     +++AITG+ GKT+  + L   L+ + K    IG+    +  
Sbjct: 94  TLLGALADEW-YGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALLPD 152

Query: 150 PLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             +L       D                    L  S +G  +     +R  +A  T +  
Sbjct: 153 GQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTR 212

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     ++    AKA +F+         +N DD   E L A   A  +KT YS  +  
Sbjct: 213 DHLDYHGTMQRYEQAKAALFQW-PDLQAAVVNADDPAGERLLASLPA-ALKTGYSL-QGA 269

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            AD   R  +  +      + L     ++V   +G H   N+L+  G +S L   +    
Sbjct: 270 PADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGWPLPQIA 329

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           + L+   P +GR +       +         L+   Y   P ++  A++ L  ++    G
Sbjct: 330 RELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPVAQARGG 389

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           R + V G     GE       ++  +        V ++  +  +         +   +P 
Sbjct: 390 RLVCVFGC---GGERDPGKRPEMGRIAVER-ADRVVVTSDNPRSESPQDIIDQILAGIPA 445

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +    S    DV+++  K 
Sbjct: 446 GMRAAVQPDRALAIMQTLWSAAPDDVILLAGKG 478


>gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
 gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
          Length = 442

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 202/444 (45%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  DSR + P   F AI+G  +DGHDFI  A  +GA   VV      ++  ++I
Sbjct: 17  NAEITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVVK----YAVDGITI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V D L AL K+A A R      +IA+TGS GKTTTKEM+   L     ++A  G+ 
Sbjct: 73  PQFVVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAILPV--PSHATKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG PL++ ++     + +FELG +H GEI     +V P + +IT IAPAH+  F  I
Sbjct: 131 NNHIGAPLSVLQLTSQHRYAVFELGANHPGEISHTVAIVHPDVTLITNIAPAHIEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A AK EI +GL  +G   +N DD++          L  K    F     A+   +  
Sbjct: 191 DGVARAKGEIHQGLSTSGIAVVNDDDAYAHFW---DDILVDKKTLRFSIEHPAEVYAQDI 247

Query: 264 KQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              +   +   + L    ++      G H  +N L        +   +      L+ F  
Sbjct: 248 HLDAYGCAQFSLILPNGRIDTQLQVPGLHNVRNALAAAACCHAVGVAIKDIQHGLNNFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R      +   T+ID++YNAN  S+  A+ VL++      G++I V GDM E+G
Sbjct: 308 VKG---RLMILSGKNQSTVIDDTYNANLRSVLVALEVLAERP----GKKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +   H ++        I  +   G       D+        +    + L   +   L 
Sbjct: 361 AWATQHHQEVGLAARRLGIDLLLSCGSFSKLATDSFGAGGE--HFTNQELLAQNLIEKLS 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
              VV+VK S S    +++N LL 
Sbjct: 419 PDTVVLVKGSRSSAMEKIVNKLLN 442


>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 461

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 211/468 (45%), Gaps = 16/468 (3%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ +A+ G           +  +SIDSR I P + F  + G H DGH FI  A +K
Sbjct: 1   MTLREISEAVGGKLPAAGDLDKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA           +       V  V+D   AL  L+   R + +  ++A+TGSVGKTTTK
Sbjct: 61  GAAGCFAAFSKNVTHPEGM-TVISVEDPEQALQDLSAFYRRKFQLPVVAVTGSVGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+  ALS   KT    G+ NNH+GVPL L R+    +  + E+GMS  GEI  L  L  
Sbjct: 120 DMIAAALSPELKTLKTEGNLNNHLGVPLMLTRLDSTYEAAVLEMGMSGYGEIDLLAKLAL 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      E IA AK E+   L   G   +N D+    LL      LG
Sbjct: 180 PTVAVITNIGESHLEMLGSREGIARAKCELLGHLAADGVAVVNADEP---LLVPHIKGLG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGI 302
            + + +FG  ++A  +              ++ +G + +EVV    G H   N++  L +
Sbjct: 237 CR-VITFGFDEHATVRCTDIINDEAGKRAIIEQEGFAPLEVVPPLPGRHNIYNLMAALAV 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D          F      G R           +I+++YNA+P ++ AA  VL++
Sbjct: 296 GRLLGVDDS---VLTEGFSRVRLSGMRLETVTTPAGIQVINDAYNASPTAVSAAFDVLAE 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++      R AVLGDM E+G+  +  H      ++ +N+S + + G     + D    + 
Sbjct: 353 LAKDAA--RFAVLGDMLELGDWEEEGHRQTGRQVARHNLSGLLVLGERAQLIADGAVAAG 410

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V+  E+       I      GD V++K S       ++ +LLE
Sbjct: 411 YPPQRVYRCESHAQAAQVIAKIARAGDWVLLKGSRGMRMEDVLAVLLE 458


>gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 452

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 459

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 219/470 (46%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G H DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNEIEQWKDIEVTSVSFDSRHLEKGALFVPLQGAH-DGHQYVETAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D   +      PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAAATLWASDHELTNSDH--PVLVVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIASILSTQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVS 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   + IA AK EI  GL++ G    + D+    LL  ++  + 
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLFVYDGDEP---LLNERAANIT 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +T   FG+    D         S     +V  +    +     +G +   N L  + + 
Sbjct: 237 QQTT-RFGRQLTDDLYATSVNAGSRSIEFKVN-EWPDEQFTIPMVGEYNVNNALAAMAVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    AL+     E R + ++    +    ++ + YN+NP + K  +  L+++
Sbjct: 295 KRLHISPNHIKTALANVELTENRAEWFKS---KNGAQILSDVYNSNPTAAKQVLKTLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
               +GRRIAVLGDM E+GE +   H  LAE ++   I  V+L G  +  L+  L     
Sbjct: 352 P--VQGRRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAHLQAKLQEQGY 409

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +IH + ++ +D L   +++ L   D+V++K+S+     +++  +  +
Sbjct: 410 PAAAIHYYQADQLDQLTAALEADLHPADMVLLKASHGLHLEQVLAAIKAQ 459


>gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20]
 gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae
           Rd KW20]
          Length = 457

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 216/476 (45%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+  +     S+ S   +      +E+    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  +GDM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKGYDAF----RILCVGDMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 122/461 (26%), Positives = 208/461 (45%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++++A+ G  I    +G  N IS D+R I     F A+KG +++G+D+ + A++KGA
Sbjct: 4   NLAEIIKAVDGEIIVKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKGA 63

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            +++++              +  V D   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 64  SIIIIDDVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +  D D  + E+GMS+ GEI  L  +  P
Sbjct: 124 LVAAFLSGKYKVFKTQGNFNNEIGLPLMIFELSKDYDIAVLEMGMSNFGEINKLASIALP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +  IT I  AH+      E I   K  I +  E   ++ +N ++   + +        +
Sbjct: 184 DVGAITNIGVAHIEYLKTRENILKEKMSITDFFENKNSLIVNCENDMLKTIVE-CDKFNL 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIV 303
           + +   G     +   +  K  SE +  +V     ++     + +G H   N L+ + I 
Sbjct: 243 ERV---GYDSTYNLYSKNIKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIGIQIA 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   K L  F+    R +      N+  FT+I++SYNANP SMKAA+ VL   
Sbjct: 300 RNFGLTFEEMEKGLGNFNATSMRLEVI----NKDKFTIINDSYNANPDSMKAALEVLKNY 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     R+IAVLG M E+G+ ++  HI + E         +  +G      K        
Sbjct: 356 S---GSRKIAVLGTMGELGDYAEEAHIQVGEFAKD-KADILLTTGEFKEYYKKGF--GER 409

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               E+   L   +   +   D +++K+S S  F  +   L
Sbjct: 410 TMVFESKQELMQRLTDMIKVNDTILIKASRSAKFEEITKYL 450


>gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
 gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
          Length = 457

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 216/476 (45%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+  +     S+ S   +      +E+    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  +GDM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKGYDAF----RILCVGDMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 452

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 452

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 209/459 (45%), Gaps = 13/459 (2%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ +I+G  +    +  VNG+ IDSR + P   FFA KG   DGHDF+  A + GA  V+
Sbjct: 8   VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+     +       +  V+D L AL  LA A R      ++A+TGSVGKT+TK++L + 
Sbjct: 68  VSRGDCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDILALC 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L S  KT    G+YNN IG+PLTL ++       + E+ M   GE+  L  + +P  A+I
Sbjct: 128 LQSRFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLATIAQPSSALI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           + +   HL     +E IA AKAE+   L       +N D     LL+        K  Y 
Sbjct: 188 SNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSP---LLEEAVRPYAAKK-YR 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG SK+ DF++ +    ++   + +   G+S ++         A N +    +  +L   
Sbjct: 244 FGYSKSCDFRIEETIIKNQGIEIRLICLGQSEKLFLPLPSRRWAMNAVAAAAMAFLLGVP 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++      S         KR           +I+++YNANP SM  A+    ++    +G
Sbjct: 304 LEEIK---SSLLNFNPGSKRLEIIPLPDGGKIINDTYNANPLSMINALETSRELQE--KG 358

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVH 425
           + +AVLGDM E+G+  Q  H ++        +  +   G    +   A + A      V 
Sbjct: 359 KLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLICIGERAAWMAEAARAAGMAGEQVR 418

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  + +    F++ SL   D ++ K+S       L   +
Sbjct: 419 HFLSKEESIGFLKQSLNSSDTILFKASRGMQLESLAEEI 457


>gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 459

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 218/464 (46%), Gaps = 15/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + +   G  IG     +++ I  DSR +   + F A+KG ++DG DF+  AV KGA
Sbjct: 5   SIERIAKWTGGELIGDKTSCWISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V+  M    G L++PV  V D L AL  +A+  R    A IIAITGS GKT+TKEM
Sbjct: 65  AAVIVDR-MQPGFGPLAVPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    KT    G++NN IG+PL+L +M    ++G+FELG +H GEI  L+ ++ P 
Sbjct: 124 VGSVLRQKYKTVCTSGNFNNQIGLPLSLLQMDKTTEYGVFELGTNHPGEIATLSRIIAPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I  AH+ +F  +E IA  K ++   +   G   L  DD + + L    H     
Sbjct: 184 IVIVTNIGSAHVGHFGSVEAIAQEKTDLLTFVSARGFAILGTDDFWSKRL----HVRSAG 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G  +N+   L +           +  + +  EV    +   MA+N L    +  +
Sbjct: 240 RVIWVGDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFL 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            +   +   + L      EG   R      +  F L D+SYNANP SM +A+  L +   
Sbjct: 300 SSLSSEEITRGLEKTSFPEG---RLTVHPIKNGFVL-DDSYNANPQSMLSALRALVEYP- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-- 423
               ++I VLG M E+G+ +++ H ++        +SHV + G +   + + L  S    
Sbjct: 355 -FSSKKIVVLGSMGELGDKARASHFEVGSFAGGLPLSHVIVVGPYGEDVYEGLRSSSFPI 413

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  +   +  F  +   L     V+VK S       ++  LL
Sbjct: 414 DCIFRTADTEEAFFCLHKLLNGNVTVLVKGSRFLKLDMIVKKLL 457


>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. SR1/5]
          Length = 462

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 122/480 (25%), Positives = 207/480 (43%), Gaps = 33/480 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +   G   G     Q  V  I+ DSR +     F  + G   D H FI 
Sbjct: 1   MKNL-TLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++ GA   +    +  +      P   V   L A+  +A     +    ++ ITGSVG
Sbjct: 60  QVMEAGALATLSERTLEGADH----PYIQVGSSLQAVKDIAEFYLEQLDIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L    +T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + +P   VIT I   HL N    + +  AK EIF+ +++   I LN DD     +K  
Sbjct: 176 AKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYVKRN--IVLNGDDDKLSTVKEY 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGK--------SMEVVHHGIG 289
           +    ++ ++ FG  +NA       +    +    ++ L+GK        +  V     G
Sbjct: 234 N---SMQPVF-FGNGENASVTCENVESRGLKGMSCDICLKGKMAENGEFQTFHVDIPMPG 289

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HM  N L    +  +   + +     +    P  GR            F ++D+ YNAN
Sbjct: 290 RHMVSNALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIET----DKFMIVDDCYNAN 345

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SMKA++ VL      G GR++A+LGDM E+G    + H  +        I      G 
Sbjct: 346 PMSMKASLDVLQD----GLGRKVAILGDMGELGTDEAALHEGVGVHAGQCRIDACICVGP 401

Query: 410 HVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + +   ++     V   + ++ L   + + +  GD ++VK+S+   F  ++  L E
Sbjct: 402 LAAHIAEKASQTNPDLTVIREKDLESLLKNLNTYVKPGDTILVKASHFMKFENVVKALQE 461


>gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 452

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Marinobacter aquaeolei VT8]
 gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Marinobacter aquaeolei VT8]
          Length = 465

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 212/473 (44%), Gaps = 18/473 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M   ++  +  + +Q    G        + +G+S D+RS+   + F A++G  +DGH+F+
Sbjct: 1   MMRAFSLAEAREWLQATLAGARTDAGELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFL 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+++GA   VV+T+    I  ++IP   V D + AL  LA   R  S A ++AITGS 
Sbjct: 61  GQALKQGAVAAVVDTE----ITDVAIPQLVVSDTVQALADLASGNRSESAARLVAITGSS 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT +EM    L+ +  T    G+ NNHIGVPLTL R+  D  FG  ELG S LGEI  
Sbjct: 117 GKTTVREMTGAILAGMGPTLVTEGNLNNHIGVPLTLFRLTPDHQFGAIELGASGLGEIAH 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              + RP +A++T    AHL  F   + I  AK EI +G+   G + LN DD  F+   A
Sbjct: 177 TVSITRPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVPADGAVVLNRDDPAFDQWHA 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNM 296
           ++    +  +   G    AD+         +     V         +V    G H   N 
Sbjct: 237 RAGQRRVLGVSRMG-HPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ L     L A        L      +G   R +        TLID+SYNANPASMKAA
Sbjct: 296 LLALAACRELGATDQQVQSGLMQVEAVKG---RLQVLKPASDLTLIDDSYNANPASMKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL+         R+AVLG M E+G+ ++  H  + E      I+ + +          
Sbjct: 353 LDVLASYPAP----RLAVLGAMAELGDEAEELHRQVGEHARARGINKLMVV--GAGGNGY 406

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                    +  + +     I +       V+VK S S    R+   + ++  
Sbjct: 407 GTGFGDETEFFPSHEQAVNAIVADRNGAMTVLVKGSRSSAMDRVAEGIQKKVK 459


>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
 gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
          Length = 457

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 212/447 (47%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  I+ D+R++   E F A+KGP++DGH FI  A QKGA  V+V+  +      + I
Sbjct: 18  NQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVDHKV-----DVDI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             F V+D   AL  +  A   +     IAITGSVGKTT KEM    LS      A  G++
Sbjct: 73  AQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNF 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+     F + ELG +HLGEI + T + +P +AV+  +APAHL  F  +
Sbjct: 133 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSL 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             +A AK EIF+GL++ G   +N D  F +    K     IK    F  S+  D      
Sbjct: 193 MGVAKAKGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIKR---FSTSEKLDIWAEDI 249

Query: 264 KQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              +  ++   +  + K + V     G H   N L+   + S L   +D    AL+    
Sbjct: 250 SLDANARASFTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALATMGD 309

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G   R          T++D++YNAN  S+KAAI +LS +     G RI  LGDM E+G
Sbjct: 310 VKG---RVNLIEVSDMLTVVDDTYNANVKSVKAAIDLLSDMQ----GHRILALGDMGELG 362

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---S 439
           E ++ +H ++ E      I  ++  G       D    +    +    D +   IQ   +
Sbjct: 363 EDARKYHQEVGEYALEKGIDELFTLGVLSKCASDVFALANR--HFSNRDQMQQQIQATIN 420

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +     +VVK S S     L+  L+ 
Sbjct: 421 QVNKKTTIVVKGSRSSRMELLVTDLVN 447


>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
          Length = 966

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 221/473 (46%), Gaps = 16/473 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  D+ +A +   +        + I  D+R IA    F A++G  +DG DF   AV+KG
Sbjct: 501 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 560

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D   +    +  V    D L A  ++A A R +    ++AITGS GKTTTK+
Sbjct: 561 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 620

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +         +YNN IG+PLTL  +    +  + E+GM  LG+I  L  L  P
Sbjct: 621 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 680

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T +   H+     IE IA AKAE+ E +E  GT+ LN DD+    ++ K+ A   
Sbjct: 681 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKA--G 738

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299
             + +FG S++AD +     +        ++ +      +  E+     G H   N L  
Sbjct: 739 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 798

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +L   +    + L+V   ++ R    +C    G +T ++++YNA+P S +A++  
Sbjct: 799 IAAARVLGLSLADVRRGLAVPPAQKMRFAVEKC----GAYTFVNDAYNASPVSTRASLKT 854

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++     GR+IAVLGDM E+G  S+S H  + E  +    + V   G     + +A  
Sbjct: 855 LAEM---FAGRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEAAK 911

Query: 420 RSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 V    + +     ++  L  GD V+ K S       +I LL +   A
Sbjct: 912 AGGVPLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 964



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 155/417 (37%), Gaps = 38/417 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +L   ++G  I       +  I  DSR +     F AI+G H DGH FI  AV+K
Sbjct: 1   MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA  ++   ++    G+    V  V ++  AL  +          K  II ITG+ GKTT
Sbjct: 61  GACAILTEREIEIPEGA--AAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP-VDVDFGIF 165
           T  M    L         IG+    +                +  TLA M    +DF + 
Sbjct: 119 TSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKT 220
           E+    L + R     +    AV T +   HL     +E    AKA +F+     G ++ 
Sbjct: 179 EVSSHALDQNR--VAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEG 236

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  +N DD+  E + A +         ++   K A  +    +  +    + +      
Sbjct: 237 KTAVVNDDDAAGETMLAHAKCAH----LTYAVKKEAALRAENIRVHARGLELTLAGAFGR 292

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++     G     N++  +G         +   +AL  F    G   R+        F+
Sbjct: 293 MDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPG---RFELVDAGQAFS 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +I + Y   P  ++  ++   +I+    GR + V G   +     +     +A  LS
Sbjct: 350 IIVD-YAHTPDGLENILNTAREIAA---GRILTVFGCGGDRDRTKRPIMGRIAAALS 402


>gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
 gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
          Length = 452

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 210/465 (45%), Gaps = 23/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLACD-----LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A    +G 
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGD 233

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++ F  +  N+DF     +  S  +   +Q    +++V+    G H   N L    + 
Sbjct: 234 RKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + AD+      L+      GR    R   +Q    L+D+SYNAN  SM AA+ VLS++
Sbjct: 294 MAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S  
Sbjct: 351 P----GFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRA---SGV 403

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
             +      +   ++  L +     ++VK S S     ++  L E
Sbjct: 404 GEHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
 gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
          Length = 453

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 214/465 (46%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    +G      ++ +S D+R +     F A++G  +D HD+ + AV  GA
Sbjct: 5   SLRQLADVLGARLVG--ENLTISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVNNGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHLP-----IDVPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP 
Sbjct: 118 AASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +E +A AK EIF GL   G   +N D +     +     L  K
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAIINADSNDEARWQD---VLTGK 234

Query: 246 TIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F        DF     +     +   +      + V     G+H   N L    + 
Sbjct: 235 TLWRFSPQGHDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAATALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     L       GR      A  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 295 LTVGASLEAVKVGLEQLQAVPGRLFPIALAPGK---LLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +Q+ H  + E     NI  V   G   + + +A     H
Sbjct: 352 P----GYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVLSVGTLSVLIGEASGTGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
               +    L   +++ +   +   V++K S S    ++++ L E
Sbjct: 408 ---FDNKAALIERLRALVTQHNTITVLIKGSRSAAMEQVVHALQE 449


>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
 gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
          Length = 466

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 209/465 (44%), Gaps = 10/465 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  +++QA      G         +  D+R++ P   F A+ G  +D H F+  A
Sbjct: 1   MAASFSDEEVVQATGATRRGGPAPAAYATVCTDTRALTPGCLFVALVGERFDAHAFVDAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   VV            + ++ VDD L AL  L    R R +  + A+ GS GKT
Sbjct: 61  AKGGAAGAVVARGRPLPALPDGLTLYEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L++        G+ NN IGVPLTL R+       + E+GM+  GEI  L  
Sbjct: 121 TTKEMVGAILATRGPALKTEGNLNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLAR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P   VIT + P HL     IE +A+A+ E+F+ +    TI +N DD+       +S 
Sbjct: 181 VVQPDAGVITVVQPEHLEGLGSIEGVAAAEGELFQEMGHGTTIVVNVDDALIPAQAERSG 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A       +FG++++AD +L   K    E     V+  G+   V  H +G H AQN    
Sbjct: 241 AQR----LTFGRAEHADVRLADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L    +  ++            +R      Q   T+ID+ YNANPASM AA+  
Sbjct: 297 FAVALALGYTPEECVRG---LESARPYSRRLNVVDGQHGVTVIDDCYNANPASMDAALET 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  + P   GR + VLGDM E+G      H  L   +  +     +  G   L   +A  
Sbjct: 354 LGTLVPAS-GRAVVVLGDMLELGPGELEEHARLGGQIPSHAALAAFF-GPRSLKGWEAAS 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +   ++ L  ++   L +GDVV+VK S      R++  L
Sbjct: 412 MGESAAHFTDVEPLMAWLAPRLREGDVVLVKGSRGMRLERVVAAL 456


>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
          Length = 447

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 222/462 (48%), Gaps = 21/462 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A  G  +       VNG + D+R I P   +  + G   DGHD+I  A  KGA 
Sbjct: 3   IREIIEATNGKLLSGHLDDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAA 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + N  +     +    V  V+D + AL  LA   R+ S A +I ITGS GKT+TK+M+
Sbjct: 62  ATLTNRPIEDDSHN----VILVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMI 117

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              +S    T    G++NN+IG+PLT+ R   +    + E+GM+HL EI +LT +  P I
Sbjct: 118 ASVISQQYTTLKTQGNFNNNIGLPLTILRYNGEEVM-VIEMGMNHLEEIDYLTKIALPDI 176

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A IT I  AH+      E I  AK EI  G+   GT+ +N D+     +  +  +L    
Sbjct: 177 AAITNIGTAHIGELGSRENILQAKMEIVHGMNH-GTLVVNNDNDLLSTVHPEGISLK--- 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G   +AD +        + S   V++ G+   V  +  G H   N L+ + I  +L
Sbjct: 233 --TIGIESDADLKATDIILNEDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQIGLLL 290

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  I+ +  F   + R        +     +ID +YNAN  SMK++I VLS  +  
Sbjct: 291 DIPMEKCIRGIETFELTKNRNDILTLDRH---IRVIDGTYNANLDSMKSSIDVLSGYTD- 346

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--V 424
              R+IAVLGDM E+G+  ++ H  +   L   NI  +   G     + D + ++     
Sbjct: 347 ---RKIAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTVGPAARYISDEVNKAKPGIA 403

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++ +    L  ++Q  L + DVV+VK+SN      +IN L E
Sbjct: 404 YHFDDNASLSAYLQECLEENDVVLVKASNGMHLKEVINDLKE 445


>gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 456

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 222/466 (47%), Gaps = 17/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  G
Sbjct: 3   MQLAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+
Sbjct: 62  AVATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P
Sbjct: 121 MTAAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+    LL  K+  +  
Sbjct: 181 DVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG   N D +       + ++  +V      ++   + IG +   N L  L + +
Sbjct: 237 QEVLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGN 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I    VD   KAL+ F     R +       +    ++ + YN+NP ++K  +    Q+ 
Sbjct: 296 IYHIPVDKMQKALASFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVP 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
               G+RI VLGDM E+GE +   H DLA+ ++   I  V+L G  +  L + L      
Sbjct: 353 TE--GKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIDSVYLCGELMGYLAEKLREKFDE 410

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             IH +  + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 411 TQIHHYQKDDLLTLTSDLKNELMPDDIVLLKASHGIHLENVVSELI 456


>gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
 gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 179/476 (37%), Positives = 255/476 (53%), Gaps = 17/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  G +          G+SID+RSI P E F A+K    DGHDF+  A
Sbjct: 1   MAVLWTSIDAAVATGGRATRPF---MATGLSIDTRSIRPGEMFVALKDVR-DGHDFVADA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+            P+  V DVL AL  L  A R R++A +IA+TGSVGKT
Sbjct: 57  LKKGAACALVSRIPEGCSEED--PLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS+  + +A   S+NNH GVP+TLARMP + DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRAVLSAQGRVHAAEASFNNHWGVPITLARMPAEADFAVIEVGMNHPGEISPLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH A+ITT+A AHL  F  +++IA  KA IF+GLE  GT  +        +L A + 
Sbjct: 175 MARPHAAMITTVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAK 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG +  +D++L   K   + + ++ +  GK M       G H A N L  L
Sbjct: 235 ARAGQ-VVTFGPAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALGVL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAA 356
            +   + AD   A   + ++ P  GRG R R  L+       F L D+++NANPASM+A 
Sbjct: 294 ALARAVGADPAVAALDIGLWAPPAGRGTRERIWLDLIDEAQSFDLFDDAFNANPASMEAG 353

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRR+A+LGDM E+G      H  +AE+ ++ +I  V L+G  
Sbjct: 354 LEVLAGQVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAGPR 413

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + AL +ALPR     + ET   L       +  GDVV+VK S       +++ L +
Sbjct: 414 MRALHEALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKGSKVSLVVDALRK 469


>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
 gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 213/472 (45%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +A  G   G   +      G+ IDSR +     F AI G + + H FI 
Sbjct: 1   MKNL-TLENIAKACHGTYHGDESKKSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++KGA  VV + D    +G    P   V+    AL  +A   R     T++ ITGSVG
Sbjct: 60  DTIEKGALCVVSHED----LGDTDFPYILVESTGQALLDIAKLYRDSFDVTVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   +S   K +  +G++NN  G+P+T+  M    +  I E+G++H GE+R L
Sbjct: 116 KTSTKEMIASVVSQKYKVHKTLGNFNNEWGLPITIFEMDESHEVVILEMGVNHFGEMRRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD     +   
Sbjct: 176 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDDLLSKM--- 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQ-GKSMEVVHHGIGYHMAQNM 296
               G+  +  FG +++             + +   + L  G++ + +    G HM  N 
Sbjct: 233 GPVKGVTPVL-FGTNEDCQCYASGIVPMGLKGTACTIHLPDGEAFDCLIPTPGAHMVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    + + L    D     +       GR          G   ++D+ YNANP S KAA
Sbjct: 292 LAGAAVGAALGLTADEIKAGIEAHTTLPGRNNIIST----GSLMILDDCYNANPVSTKAA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL        GR++AVLG+M E+G   +  H ++ E  + + I  V   G     + +
Sbjct: 348 IDVLDMA----IGRKVAVLGNMGELGNNEKELHREVGEYAAKHGIDVVCGIGDLAKEITE 403

Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  +      H+          +   + +GD V+VK+S+   F  ++  L +
Sbjct: 404 SAAKGASTETHWFAAKQDFLAEMHHIIKEGDNVLVKASHGMQFPEIVEQLKK 455


>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 968

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 221/473 (46%), Gaps = 16/473 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  D+ +A +   +        + I  D+R IA    F A++G  +DG DF   AV+KG
Sbjct: 503 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 562

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D   +    +  V    D L A  ++A A R +    ++AITGS GKTTTK+
Sbjct: 563 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 622

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +         +YNN IG+PLTL  +    +  + E+GM  LG+I  L  L  P
Sbjct: 623 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 682

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T +   H+     IE IA AKAE+ E +E  GT+ LN DD+    ++ K+ A   
Sbjct: 683 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKA--G 740

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299
             + +FG S++AD +     +        ++ +      +  E+     G H   N L  
Sbjct: 741 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 800

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +L   +    + L+V   ++ R    +C    G +T ++++YNA+P S +A++  
Sbjct: 801 IAAARVLGLSLADVRRGLAVPPAQKMRFAVEKC----GAYTFVNDAYNASPVSTRASLKT 856

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++     GR+IAVLGDM E+G  S+S H  + E  +    + V   G     + +A  
Sbjct: 857 LAEM---FAGRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEAAK 913

Query: 420 RSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 V    + +     ++  L  GD V+ K S       +I LL +   A
Sbjct: 914 AGGVPLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 966



 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 155/419 (36%), Gaps = 38/419 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             + T  +L   ++G  I       +  I  DSR +     F AI+G H DGH FI  AV
Sbjct: 1   MAMKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
           +KGA  ++   ++    G+    V  V ++  AL  +          K  II ITG+ GK
Sbjct: 61  EKGACAILTEREIEIPEGA--AAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP-VDVDFG 163
           TTT  M    L         IG+    +                +  TLA M    +DF 
Sbjct: 119 TTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFV 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLE 218
           + E+    L + R     +    AV T +   HL     +E    AKA +F+     G +
Sbjct: 179 VMEVSSHALDQNR--VAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAK 236

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +  T  +N DD+  E + A +         ++   K A  +    +  +    + +    
Sbjct: 237 EGKTAVVNDDDAAGETMLAHAKCAH----LTYAVKKEAALRAENIRVHARGLELTLAGAF 292

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             M++     G     N++  +G         +   +AL  F    G   R+        
Sbjct: 293 GRMDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPG---RFELVDAGQA 349

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F++I + Y   P  ++  ++   +I+    GR + V G   +     +     +A  LS
Sbjct: 350 FSIIVD-YAHTPDGLENILNTAREIAA---GRILTVFGCGGDRDRTKRPIMGRIAAALS 404


>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 199/497 (40%), Gaps = 50/497 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+G++IDSR       F  IKG   DGH FI   ++
Sbjct: 4   MSLQEITTACGGTYYGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +    +  S      P   V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 64  QGALCTLSEHPLSDSS-----PYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTST 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 119 KEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA- 241
           +P I V+T I   HL N    + +  AK E+F       +I LN DD     +     A 
Sbjct: 179 QPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRSGASIILNGDDDKLSEIATVHAAS 238

Query: 242 ----------------------------LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWM 272
                                        G  T   FGK  +  F   + +    + +  
Sbjct: 239 FSKQDGTTVVPYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSC 298

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++        V+    G HM  N L  + +   L   +D     +    P  GR      
Sbjct: 299 KIHTPAGDFTVIISIPGAHMVYNALAGIAVGIELGLTLDEIKTGIEALQPVAGRNHMIET 358

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T++D+ YNANP SMKA++ VLS        R++A+LGDM E+G      H ++
Sbjct: 359 EH----LTILDDCYNANPVSMKASLDVLSTALT----RKVAILGDMFELGTKELLLHREV 410

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +   +  +   G    A+ D            + Y ET +     + S + + D +
Sbjct: 411 GTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTI 470

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK+S+   F  +++ L
Sbjct: 471 LVKASHGMAFEEIVHAL 487


>gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
 gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
          Length = 452

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 209/465 (44%), Gaps = 23/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLACD-----LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A    +G 
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGD 233

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++ F  +  N+DF     +  S  +   +     +++V+    G H   N L    + 
Sbjct: 234 RKVWRFSPNAANSDFTATNVQITSHGTEFTLHTPTGNVDVLLPLPGRHNIANALAATSLA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + AD+      L+      GR    R   +Q    L+D+SYNAN  SM AA+ VLS++
Sbjct: 294 MAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S  
Sbjct: 351 P----GFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRA---SGV 403

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
             +      +   ++  L +     ++VK S S     ++  L E
Sbjct: 404 GEHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
 gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
          Length = 454

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 228/465 (49%), Gaps = 29/465 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L+   G+   I+ +  + GIS DSR I P E F A++G  +DGH+F   AV+KGA 
Sbjct: 10  ISKILEISPGNFPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGAT 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++++  +   + +  IP F V++ L A  ++A   R + +  IIA+TGSVGKTTTKE++
Sbjct: 70  ALILDKKLSV-LSTNEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+  K +  IG+YNN IGVP TL  +     +G+ E+ M   GEI  LT + RP I
Sbjct: 129 AAVLSTAGKVHKSIGNYNNEIGVPKTLLELDHTHHYGVIEMAMRAKGEISLLTEITRPTI 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT +  AH+      E IA AK E+   + +     LN+D+S   LL   +       
Sbjct: 189 GVITNVGTAHIGRLGSQEAIAEAKCELLAQMSQDSIAILNHDNS---LLLETASTFWQGK 245

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             ++G  +  D   +            ++++GK         G H A N L  L +  +L
Sbjct: 246 TITYGL-EGGDLSGQLINPQ------TLRVEGKEFP--LPLPGRHNALNYLAALAVAKVL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  T +      +   GR +R++   N     ++DE+YNA   SM AA+ +L +    
Sbjct: 297 DLDW-TPLTEGLTVNLPSGRSRRHQLPNN---ILILDETYNAGLESMLAALQLLKETP-- 350

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS 421
              R IAVLG M E+GE S  FH  + + +    I H+ +        H+ A  D +  S
Sbjct: 351 -GKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAGADGVATS 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +T   +  ++Q  +  GD ++ K+SNS    R++N L+ 
Sbjct: 410 C----FKTHQEVVNYLQGLIKSGDRILFKASNSVELNRVVNDLIN 450


>gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 452

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli WV_060327]
 gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli RN587/1]
          Length = 452

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 219/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 452

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
 gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
          Length = 454

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 208/474 (43%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSEREVAGH------PYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 117 MIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HI V+T I  AHL  F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG    A+  ++  ++  E       +  + +       G + A N ++   
Sbjct: 230 --SQMVIRFG--DGAEIFVKDLQESKESLTFMTNVIDRPIT--LPVPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    D  ++A       E    R           ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAISDDDIVEA---LETIELTRNRTEWKKAANGADILSDVYNANPTAMRLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I  +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     + 
Sbjct: 341 KIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQM 400

Query: 422 I---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V+Y       +  D +   +Q  L   D +++K SNS    +++  L E
Sbjct: 401 FPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQILLKGSNSMQLAKVVEALEE 454


>gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
 gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 129/462 (27%), Positives = 223/462 (48%), Gaps = 16/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + ++LL+A+ G  I +  +   N + ID+R I     +FAI G  ++G+ F++ A  KGA
Sbjct: 4   SLNELLEAMNGELI-VKGKTDFNSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKGA 62

Query: 66  GLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+  +     + ++  V  V+D   AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 63  SIAIVDEILFDLNNTDNLQTVIKVEDTEKALLNLANYYRKKLGLKVIGVTGSCGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K +   G++NN IG+PL +  +   +D  + E+GMS+LGEI  L +  RP
Sbjct: 123 LIAAFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGEIDVLANCARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +H+ N    E I  AK+EIF   ++T T+ +N +D     +K K      
Sbjct: 183 DIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDENLLKIKDKCFE--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I   G +   D          +++   V+ + +         G H   N ++ + +  
Sbjct: 240 --ILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGKHNILNSMLAVEVAK 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D   K +        R +  +    +   T+I++ YNA+P SMK+++ VLS   
Sbjct: 298 KLNVTFDEMKKGIKNLEATSMRLQVIK----RNKITIINDCYNASPDSMKSSMDVLSSYK 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+IA+LG M E+GE +   HI++     L  +  +   G +    K        +
Sbjct: 354 T---GRKIAILGTMNELGEEAVKSHIEVGNYA-LTKVDLLIAVGEYKDYFKKGFTGENII 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++ T +     + + + + DVV+VK+S    F  +++ L E
Sbjct: 410 TFA-TKEECIDKLDTIIKENDVVLVKASRGMKFEDIVSSLEE 450


>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 467

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 223/469 (47%), Gaps = 18/469 (3%)

Query: 7   FHDLLQAI-----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             ++L+A       G  +    +  ++ I IDSR   P   F AI G + DGH +I  A 
Sbjct: 6   IKEVLEATRGQKSNGRLVIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIKSAY 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             G    +V+ ++          +  VD+   A+ +LA   + +    ++ ITGSVGKTT
Sbjct: 66  DLGCRTFMVSQELDILDQLDGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGITGSVGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T++M+   +S+  +T     + NN  GVPLT+  +    +  + E+GMS  GEI +L  +
Sbjct: 126 TRDMVYAVVSNKFRTLKNEKNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRP IAVI+ I  +H+ +    E I  AK EI +   +   + +N DD +   L+A+  A
Sbjct: 186 VRPDIAVISNIGTSHIEHLGSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKLRAEKDA 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +   ++ SFGK       L+  +    ++   V+L+ K  E     +G H   N +  + 
Sbjct: 246 ISY-SLCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSAIL 304

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  ++D   + L  F     R    +  +N G + +I++ YNA+P SM A++ VL 
Sbjct: 305 VGLRLGMNIDEIRQGLMNFVATGDR----QNIINTGKYLVINDVYNASPDSMIASLKVL- 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             + + + R++A+LGD  EMG+  +  H  +  + S+     +   G     +       
Sbjct: 360 --ALNKDRRKVAILGDCLEMGDYEEEGHRRVG-LQSVRRSDVIITQGKAARFIGIEAQEH 416

Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++++ +T   L   +++ L D D ++VK+S    F  ++N L E
Sbjct: 417 GFDLSNIYHFDTKKELIEDLKNILEDQDAILVKASRGMAFEDIVNYLKE 465


>gi|33593958|ref|NP_881602.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella pertussis Tohama I]
 gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella pertussis Tohama I]
 gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
          Length = 945

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 124/488 (25%), Positives = 203/488 (41%), Gaps = 42/488 (8%)

Query: 1   MNPLWTF------------HDLLQAIQGHSIGIVPQGFVN---------GISIDSRSIAP 39
           M  LW+             H+  Q I G  +    + +            +S D+R I  
Sbjct: 460 MQTLWSAAPDDVILLAGKGHETYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDTRRIGR 519

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            E F A+ G ++DGHD++  A   GA   VV       +  +++P   + D L AL ++ 
Sbjct: 520 GELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLGDTLAALGRMG 575

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARM 156
            A R      ++A+TGS GKTTTKEM++  L+         A  G++NN IGVPLTL R+
Sbjct: 576 TAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRL 635

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +FELGM+H GEI  L  +  P +A++T     H      +E +A     +   
Sbjct: 636 RARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAVAHENGAVIGA 695

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L + G      D+ +  +        G + +  FG     D    +    +  +   V  
Sbjct: 696 LPEDGVAVYPGDEPYAAIW---DKLAGARRVLRFGLQPGLDVYAERVVTQAHGTQCGVVT 752

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S  +     G H  +N L  +       A + T I AL+ F    GR +  + +   
Sbjct: 753 PAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGRMQHRQMS--- 809

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LID++YNANP S +AAI VL+++       R  VLGDM E+G+   + H ++ +  
Sbjct: 810 DGTVLIDDTYNANPDSARAAIDVLARLPAP----RALVLGDMGEVGDNGPAMHREVGDYA 865

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             + I  +   G        A   +       ++D +   ++  L     +++K S    
Sbjct: 866 REHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS-ILIKGSRFMR 921

Query: 457 FYRLINLL 464
             R++   
Sbjct: 922 MERVVTAF 929



 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 169/453 (37%), Gaps = 41/453 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFGVD 89
           +DSR I P + F A  G   DG  F+  A+ +GA  ++  T+   VA  G+ ++PV  + 
Sbjct: 34  LDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQLR 93

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            +LGAL       R     +++AITG+ GKT+  + L   L+ + K    IG+    +  
Sbjct: 94  TLLGALADEW-YGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALLPD 152

Query: 150 PLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             +L       D                    L  S +G  +     +R  +A  T +  
Sbjct: 153 GQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTR 212

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     ++    AKA +F+         +N DD   E L A   A  +KT YS  +  
Sbjct: 213 DHLDYHGTMQRYEQAKAALFQW-PDLQAAVVNADDPAGERLLASLPA-ALKTGYSL-QGA 269

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            AD   R  +  +      + L    +++V   +G H   N+L+  G +S L   +    
Sbjct: 270 PADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGWPLPQIA 329

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           + L+   P +GR +       +         L+   Y   P ++  A++ L  ++    G
Sbjct: 330 RELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPVAQARGG 389

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           R + V G     GE       ++  +        V ++  +  +         +   +P 
Sbjct: 390 RLVCVFGC---GGERDPGKRPEMGRIAVER-ADRVVVTSDNPRSESPQDIIDQILAGIPA 445

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +    S    DV+++  K 
Sbjct: 446 GMRAAVQPDRALAIMQTLWSAAPDDVILLAGKG 478


>gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
 gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
          Length = 452

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 220/464 (47%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q+   S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQIPTGSVDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 468

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 220/466 (47%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +A+Q  ++    P   V G++ DSR +   + F  + G + DGH +I  A++ 
Sbjct: 9   MQVAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEH 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    +    +PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 68  GAVATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+
Sbjct: 127 DMIASVLSTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AH+  F   + IA AK EI  GL++ GT   N D+   +    +     
Sbjct: 187 PDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQERAKEVSQHQ 246

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG                 Q+  +  L           +G +   N L  L + 
Sbjct: 247 R----TFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAALLVA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    A +A++ F P E R +       +    ++ + YN+NP + +  ++  + +
Sbjct: 302 DTFHIRPAAAQQAIASFVPTENRTEWLTGYRGE---AILSDVYNSNPTAARRVLAAFAAV 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
               +G+RIAVLGDM E+GE S + H+ LA  L    I+ V+L+G H+ AL + L     
Sbjct: 359 PT--KGQRIAVLGDMLELGEQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYP 416

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++H + ++    L   + +++   D V++K S+     +++  L
Sbjct: 417 AGAVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 462


>gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
 gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
          Length = 487

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 133/487 (27%), Positives = 207/487 (42%), Gaps = 31/487 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHAV 61
           T  D+L A  G  +       +NG   +SR I         F  I G   D H+FI   V
Sbjct: 4   TVQDILNATNGRLLNGSADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA    +        G        V+D   AL    +  R +     I ITGSVGKTT
Sbjct: 64  ENGAKAFFIKKGHELPSGIGETAAIEVEDTEAALLDTGLWYREKFNIPFIGITGSVGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+  ALSSI   +   G+ N+ IG+PLTL  +    +  I E+G+S   E+  L   
Sbjct: 124 TKEMVAAALSSI-NIHKTKGNANSTIGLPLTLFGLEPCNEAAIIEMGISEFHEMEKLVEA 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-- 239
            RP+ A+ T +  AH+ N    E I   K  I +       +F+N DD     + A++  
Sbjct: 183 GRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFTADSVLFINADDELLMKVAAENSE 242

Query: 240 -HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGYHMA 293
                +K I +FG ++ ADF           +      + ++ E V        +G H  
Sbjct: 243 FRPKNVKHIVTFGINEKADFYASSITISDSGTDFVANYKSENGEAVSEQIHLKTLGLHNV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  + +   L      + K L+ + P  GRG   +        T+ID++YNA+P SM
Sbjct: 303 RNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNIIKS----NGLTIIDDTYNASPDSM 358

Query: 354 KAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-------ISHV 404
           KA++ ++ ++    E   RR  V  D+ E+GE +++ H  + E +  YN       I  +
Sbjct: 359 KASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHYKVGEYIKFYNKENTENKIDCL 418

Query: 405 WLSGFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              G     +      + L  +    +  T      +++S L  GD +VVK S       
Sbjct: 419 ITVGKDSEQIILGVKSEDLETNPVTRHFSTNVEASDYLKSLLKKGDAIVVKGSRGMQTEE 478

Query: 460 LINLLLE 466
           +IN +L 
Sbjct: 479 IINSILN 485


>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
 gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
          Length = 455

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 208/465 (44%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   I G    +      +G+S D+R +     F A+KG ++D HDF+    +KG 
Sbjct: 4   TLGQLHLWINGSK--MTADASFDGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV          +  +P   V D   AL  +A   R      ++ +TGS GKTT KEM
Sbjct: 62  AAVVAERI----PENYPLPALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +     +        A  G++NN IGVPLT+ RM  +    + ELGM+H+GE+ +L+ + 
Sbjct: 118 IATIFKTAFGEDGRLATSGNFNNDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + ++      H      +  +A     +   L + GT     D+ + +L    +   
Sbjct: 178 QPTVGLVNNAQREHQEFMQTVLAVAEENGTVIRSLPENGTAVFPADEPYSDLW---TRYA 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + I +FG  K+A     ++K     + + ++ +GKS  V     G H  +N L     
Sbjct: 235 GARQIRTFGLGKDAKVSG-QYKNEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAAC 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D  T +K L  F P  G   R           LID++YNANP S++AAI VL++
Sbjct: 294 ARSAGIDWQTIVKGLEAFSPVHG---RLEKKNAFNGALLIDDTYNANPDSVRAAIDVLAE 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +S    G+ I VLGDM E+G   + FH+++ E      ISH +  G        A   S 
Sbjct: 351 LS----GKGIFVLGDMGEVGNDGERFHVEVGEYAKERQISHFFTFGEMARFASKAYGNSG 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + + M+ +   ++  L     V+VK S      R++N L+ +
Sbjct: 407 R--HFDNMNEMNAVLEQLLEPDMTVLVKGSRFMKMERVVNQLMNK 449


>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 479

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 142/481 (29%), Positives = 209/481 (43%), Gaps = 30/481 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G S  I      V G +  DSR + P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAAIVGGQSYDIPDADRLVTGPVVTDSRRVGPGSLFTAFAGERADGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  V+           + +P   VDDV  AL  LA     R   T +A+TGS G
Sbjct: 60  RAVADGAVAVLATRP-------VGVPAIVVDDVTAALGALARHVVERLGTTTVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    G+ NN IG+PLT  R     +  + E+G  ++G+IR+L
Sbjct: 113 KTSTKDLIAQLLERKGPTVYPEGNLNNEIGLPLTALRADESTEHLVLEMGARYIGDIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELL 235
           T LV P I ++  +  AHL  F   E IA AK E+ E L    + G   LN DD     +
Sbjct: 173 TGLVPPRIGLVLNVGTAHLGEFGSRERIAEAKGEMVESLPSGEEGGVAVLNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
             ++ A     +  FG+  +AD +    +   +      +       +V     G H   
Sbjct: 233 AERTRA----RVVLFGEHSSADIRAANVRLTRQGRPAFTLHTPTGCSDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L    D    ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGLSADEIALALSEAGTLSRW--RMEVTERPDGVTIVNDAYNANPESMR 346

Query: 355 AAISVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           AA+  L+   Q +    GR  AVLG M E+G+ + + H  +  +    N+S +   G   
Sbjct: 347 AALRALAAMGQGAQSRGGRTWAVLGLMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGRE 406

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + A  +       VH S+        ++S L  GDVV+VK+S S G  R+   LL
Sbjct: 407 ASWLQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLERVAQALL 465

Query: 466 E 466
           +
Sbjct: 466 D 466


>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
 gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
          Length = 470

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 217/464 (46%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNIDGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFVTNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL      +    R           +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTNSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---ALKDALPRS 421
            +G+ ++  VL DM E+G+LS   H + AEVL    I+ ++L G  +    A+ +A    
Sbjct: 366 SNGK-QKYLVLADMLELGDLSTKLHQESAEVLENDTIAKIFLYGDAMKAFGAVAEAKIGQ 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + + +T + L + + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKLQHFDTKESLEMALLSEITGNEWILVKGSYGMGLKDVVENLI 468


>gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 463

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 172/470 (36%), Positives = 254/470 (54%), Gaps = 16/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    + +A++G +        V  ++ DSR I   + FFA+KG   DGH+++  A
Sbjct: 1   MKALWQSEAIARAVKGTA---SADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVDAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA   VV + +         P   VDD   AL  LAVA+R R+   II ITGSVGKT
Sbjct: 58  FKRGAAGAVVMSPVPY-------PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110

Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TKE L +AL  +   K +  + SYNNH+GVPL+LARMP +  FGIFE+GM+H GE+  L
Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A+IT IAPAH + F+    IA AK+EIFEGL   G   + +D  + +LL AK
Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + I SFG  + A  + +   + ++    +   ++ + +         +   N +
Sbjct: 231 VQEKKAE-IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +V  +  D+  A  AL      +GRG+R+   +  G   +IDESYNANPASM A I
Sbjct: 290 AVLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L       + RRI +LGDM E+G+ S ++H  LA+ LS   + HV L G  + AL+++
Sbjct: 350 KALENEPK--DKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEES 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   I     E  D     +   L   D+++VK SNS G   +++ L ++
Sbjct: 408 LAGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSTVVSSLSKK 457


>gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum WCFS1]
 gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
 gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum WCFS1]
 gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
          Length = 462

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 220/466 (47%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +A+Q  ++    P   V G++ DSR +   + F  + G + DGH +I  A++ 
Sbjct: 3   MQVAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEH 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    +    +PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+
Sbjct: 121 DMIASVLSTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AH+  F   + IA AK EI  GL++ GT   N D+   +    +     
Sbjct: 181 PDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQERAKEVSQHQ 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG                 Q+  +  L           +G +   N L  L + 
Sbjct: 241 R----TFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAALLVA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    A +A++ F P E R +       +    ++ + YN+NP + +  ++  + +
Sbjct: 296 DTFHIRPAAAQQAIASFVPTENRTEWLTGYRGE---AILSDVYNSNPTAARRVLAAFAAV 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
               +G+RIAVLGDM E+G+ S + H+ LA  L    I+ V+L+G H+ AL + L     
Sbjct: 353 PT--KGQRIAVLGDMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYP 410

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++H + ++    L   + +++   D V++K S+     +++  L
Sbjct: 411 AGAVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 456


>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 475

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 213/479 (44%), Gaps = 23/479 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  ++   + G    I  P   V G + IDSR + P   F A+ G H DGHD+  
Sbjct: 1   MIPL-SLTEITGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGEHVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+       S     +P   V DV+ A+  +A A   R   T++A+TGS G
Sbjct: 60  GAVEAGAVAVLATR--PVSTPDAPVPALVVPDVVAAMGAIARAVVERLGTTVVALTGSAG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS+NN IG+PLT  R        + E+G    G IR+L
Sbjct: 118 KTSTKDLIAQLLQRHGPTVWTHGSFNNEIGLPLTALRADTTTQHLVLEMGARGKGHIRYL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELL 235
           T L  P I ++  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 178 TDLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPSAEDGGVAVLNADDPLVRAM 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A        FG++ +A  +    +          +       +V     G H   
Sbjct: 238 ASRTKA----RTVLFGEAGDAHVRASNVRLADGGRPAFTLHTPTGCGDVTMRLYGEHHVS 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +       VD    ALS          R          T+++++YNANP SM+
Sbjct: 294 NALAAAAVAHETGMSVDEIAVALSEAGQLSRW--RMEVTERSDGVTVVNDAYNANPESMR 351

Query: 355 AAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
           AA+  L+ +     GRR  AVLG M E+G+ S + H  +  +    N+S +   G     
Sbjct: 352 AALRALAAMGAATPGRRTWAVLGPMAELGDESLAEHDAVGRLAVRLNVSKLVAVGGREAA 411

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + A  +       VH S+ +      ++S L  GDVV+VK+S S G  +L   LLE
Sbjct: 412 WLDMGAKNEGSWGEESVHVSD-VRAAVDLLRSELRPGDVVLVKASRSVGLEQLAQALLE 469


>gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 452

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 LVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
 gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
          Length = 454

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 208/474 (43%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSEREVAGH------PYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 117 MIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HI V+T I  AHL  F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG    A+  ++  ++  E       +  + +       G + A N ++   
Sbjct: 230 --SQMVIRFG--DGAEIFVKDLQESKESLTFTTNVIDRPIT--LPVPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    D  ++A       E    R           ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAISDDDIVEA---LETIELTRNRTEWKKAANGADILSDVYNANPTAMRLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I  +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     + 
Sbjct: 341 KIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQM 400

Query: 422 I---HVHYSE------TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V+Y +        D +   IQ  L   D +++K SNS    +++  L +
Sbjct: 401 FPIGKVYYFKKTADENQFDAMLETIQKVLQPADQILLKGSNSMQLVKIVEALEK 454


>gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 452

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
 gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 203/464 (43%), Gaps = 21/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q ++G  I         GIS DSR + P   F A+KG ++D H F+     K  
Sbjct: 4   TLSQIRQWVRGSRI--TADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V         +  +P   V D   A+ ++A   R R    ++ +TGS GKTT KEM
Sbjct: 62  AAVLVER----VPENYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +     +       A  G++NN +GVPLT+ R+       + ELGM+H+GE+ +L  + +
Sbjct: 118 IASIFRTAWGENCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++      H      +E +A     +   L + G      DD++  L    +   G
Sbjct: 178 PTVGLVNNAQREHQEFMQSVEAVARENGTVIRMLPENGIAVFPADDAYSSLWAGYA---G 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG SK+AD     ++    ++ + + L G+ +E+     G H  +N +      
Sbjct: 235 GRQTMTFGFSKDADVSA-AYRIEKGKTRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACC 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      + L  F P  GR +R           LID++YNANP S++AAI VL+ +
Sbjct: 294 LAAGIGKLEIAEGLEKFVPVRGRLER---KTAFNGALLIDDTYNANPDSVRAAIDVLADM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G    I VLGDM E+GE  + FH ++        I+H +  G       +A      
Sbjct: 351 PSDG----IFVLGDMGEVGEEGERFHAEVGAYARERRINHFFTFGEMARFASEAY--GKE 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   ++ +   +++ +     ++VK S      R++  L+ +
Sbjct: 405 ARHFMDLEEMNGVLKALVKPDMAILVKGSRFMRMERVVEQLMND 448


>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 198/497 (39%), Gaps = 50/497 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+G++IDSR       F  IKG   DGH FI   ++
Sbjct: 4   MSLQEITTACGGTYYGEPSLLTREVSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +    +  S      P   V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 64  QGALCTLSEHPLSDSF-----PYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTST 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 119 KEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA- 241
           +P I V+T I   HL N    + +  AK E+F       +I LN DD     +     A 
Sbjct: 179 QPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRPGASIILNGDDDKLSEIATVHAAS 238

Query: 242 ----------------------------LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWM 272
                                        G  T   FGK  +  F   + +    + +  
Sbjct: 239 FSKQDGTTVVPYSDSTHDETSAASAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSC 298

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++        V+    G HM  N L    +   L   +D     +    P  GR      
Sbjct: 299 KIHAPAGDFTVIISIPGAHMVYNALAGTAVGIELGLTLDEIKTGIEALQPVAGRNHMIET 358

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T++D+ YNANP SMKA++ VLS        R++A+LGDM E+G      H ++
Sbjct: 359 EH----LTILDDCYNANPVSMKASLDVLSTALT----RKVAILGDMFELGTKELLLHREV 410

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +   +  +   G    A+ D            + Y ET +     + S + + D +
Sbjct: 411 GTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTI 470

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK+S+   F  +++ L
Sbjct: 471 LVKASHGMAFEEIVHAL 487


>gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia proteamaculans 568]
 gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia
           proteamaculans 568]
          Length = 453

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 135/474 (28%), Positives = 218/474 (45%), Gaps = 25/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L   +    IG      +  ++ D+R +     F A+KG  +D HDF + A
Sbjct: 1   MIPV-SLRTLADVLSAELIGA--DCQIVEVTTDTRQVTTGCLFVALKGERFDAHDFAVDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V+  ++       +P   V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 58  VAAGAGALLVSKRLLVE-----VPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +     G++NN IGVPLTL R+    DF + ELG +H+GEI + T 
Sbjct: 113 SVKEMAAAILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   LN D++ +   ++   
Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAILNADNNDWPHWQSM-- 230

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  KT++ F    ++  DF     +   + +   +     + ++     G H   N L 
Sbjct: 231 -LDGKTVWRFSPQAAEGVDFFASDVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +     A ++   + L       GR      + +Q    L+D+SYNAN  SM AA  
Sbjct: 290 AAALAMSAGASLEAVRQGLKQLQAVPGRLFPIALSDHQ---LLLDDSYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+G  ++  H  + E   L  +  V   G     L +A 
Sbjct: 347 VLAEMP----GYRVMVVGDMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQVLTEA- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
             S +  + +    +   +   L +  V  V++K S S    +++  L E+ P 
Sbjct: 402 --SGNGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQEKAPC 453


>gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
 gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
          Length = 452

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 215/468 (45%), Gaps = 26/468 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++   +     + +     +N I  DSR I   + F  ++G   DGH+FI  A   G
Sbjct: 4   TLQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ +       P   V D L A   LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSEKNITSD-----YPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L++L  P
Sbjct: 118 MIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTHP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL  F   E+IA  K +I +G++  G +    D      L  K      
Sbjct: 178 HIAVVTLIGEAHLEFFGSREKIAQGKMQITQGMDGHGILIAPADKIISSFLPEK------ 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  +  D  + + ++       +       ++      G + A N ++   +  
Sbjct: 232 QKVIRFGADE--DIFVTELEEHKNYLNFKTNFLDNEIK--LPVTGKYNATNAMIASYVGK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  I AL+  +    R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 LLNVSEEKIISALAQLNLTRNRTEWKKAA---NGADILSDVYNANPTAMKLILETFSSIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  G++IAVL DM E+G+   + H  +   L    I  ++L G  + AL D + +   V
Sbjct: 345 ANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYSV 404

Query: 425 ---HYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +Y    + +D L   IQ  L   D +++K SNS    +++  L +
Sbjct: 405 GKWYYFAQADQVDELTEQIQKVLGPNDQILLKGSNSMKLAQVVECLEK 452


>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Pseudomonas entomophila L48]
 gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Pseudomonas
           entomophila L48]
          Length = 455

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 133/462 (28%), Positives = 206/462 (44%), Gaps = 21/462 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   L  A+    +G        G+SIDSRS+   + F A+ GP +DGHD++     KG
Sbjct: 5   MTLSQLTTALGARHVGA--DASFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  +    I  + +P   V D   AL +L    R      ++AITGS GKTT KE
Sbjct: 63  AVAALVERE----IADVDLPQLVVADSRLALGQLGALNRAAFDKPVVAITGSSGKTTVKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   L +P
Sbjct: 119 MLAAILRTRGPVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRMGEIRYTVGLTKP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +I     AH+  F G E+I  AK EI EGL + GT  LN  D  F++ + ++   G 
Sbjct: 179 QVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGTAILNLADKAFDIWRKRA---GT 235

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             I SF      ADF      + +       +     S+ V  + +G H   N L     
Sbjct: 236 HRILSFALDNPQADFHASDIGRDARGCPSFTLHGPDGSVPVQLNLLGIHNVSNALAAAAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +      L+   P +G   R    +      +ID+SYNANP SM AAI +L+ 
Sbjct: 296 AHAVGLSLSGIAAGLNAVQPVKG---RTVAQVAPSGVRVIDDSYNANPTSMCAAIDILAG 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A     
Sbjct: 353 FS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGTNMAHAVKAFGEKG 407

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +  T   L   +++       +++K S S     ++  L
Sbjct: 408 R--HFATQAELIDAVRTEAASDTTILIKGSRSAAMENVVAAL 447


>gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
 gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
          Length = 453

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 210/465 (45%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    +G      ++ +S D+R +     F A++G  +D HD+   AV  GA
Sbjct: 5   SLRQLADVLGARLVG--EDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNDGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHLP-----IDVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP 
Sbjct: 118 TAAILRQCGNVLYTAGNFNNDIGVPLTLFRLMPEHDYAVIELGANHIGEIAYTTAMVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +E +A AK EIF GL   G   LN D            AL  K
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAQAKGEIFSGLPAQGVAILNADSHDEARWHD---ALAGK 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T + F     A  DF           +   +      + V     G H   N L    + 
Sbjct: 235 TRWRFSPQARAGVDFYASDVGISERGTDFVLHTPAGDIAVTLPLPGRHNIANALAAAALS 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +D     L+      GR      A  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 295 LAVGASLDAVKAGLAQLQAVPGRLFPIALAPGK---LLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +Q+ H  + E     NI  V   G     + DA     H
Sbjct: 352 P----GYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVLSVGVLSALIGDASGTGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
               +    L   +++ +   +   V++K S S    ++++ L E
Sbjct: 408 ---FDNKTALIARLRALVAQHNTITVLIKGSRSAAMEQVVHALQE 449


>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 454

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 217/462 (46%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS++I     F  I     DGH ++  A+  
Sbjct: 4   MNLKKLEEVVDGVGLQESFHHIEIHGVCIDSKNIKEGNLFVPIIRVK-DGHGYVKEAMDN 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 63  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++++  LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 121 DIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEI+ AK EI +GL++ G +  N D    E L ++ + + 
Sbjct: 181 PDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGLLLYNGD----ETLLSRKNNVL 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    SFG+    D      +        +  L    ++      G H   N ++ + + 
Sbjct: 237 VLECKSFGEKDTNDLFPTNVQLDEYGVHFK--LNDSKIQYDVPLHGKHNILNTIVGIAVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A            R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 295 QFYNVPTEKIQDA---LRQINITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + +   ++I V+GDM E+G+ ++++H ++ ++L+  NIS+V+  G     + +   +   
Sbjct: 352 NAYK--KKIIVIGDMLELGKEAETYHREIGKMLNQENISYVFTYGEMAEIVAEEARKKYD 409

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              V        +   +   +   DVV++K S       ++ 
Sbjct: 410 TGKVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQ 451


>gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 127/474 (26%), Positives = 207/474 (43%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   NLHEIAKVVGAKNTISDFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSEREVEGH------PYILVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 117 MIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HI V+T I  AHL  F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIGVVTLIGEAHLEFFGSREKIAKGKLQIVDGMDSDGILIAPVDSIVDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG    A+  ++  ++  +       +  + +       G + A N ++   
Sbjct: 230 --SQMVIRFG--DGAEIFVKDLQESKDSLTFTTNVIDRPIT--LPVPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    D  ++A       E    R           ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAISDDDIVEA---LENIELTRNRTEWKKAANGADILSDVYNANPTAMRLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I  +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     + 
Sbjct: 341 KIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQM 400

Query: 422 I---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V+Y       +  D +   +Q+ L   D +++K SNS    +++  L  
Sbjct: 401 FPLGKVYYFKKTADEDQFDDMLKTVQTVLQPADQILLKGSNSMHLAKVVEALEN 454


>gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)]
 gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces lividans TK24]
 gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
 gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           coelicolor A3(2)]
 gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
          Length = 471

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 138/478 (28%), Positives = 203/478 (42%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G    I      V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MITL-SLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  V+ +         + +P   VDDV  AL  LA     R   T++A+TGS G
Sbjct: 60  RVVEAGAVAVLGSRP-------VGVPAIVVDDVQAALGALARHVVRRLGTTLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN +G+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLPLTALTATDETKFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
           T L  P I  +  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 173 TELTPPKIGAVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG+S  AD +    +          +     + +V     G H   
Sbjct: 233 ASRTKA----KVILFGESGEADVRAENVRLTDTGQPSFSLHTPSGASDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L    D    ALS          R          T+++++YNANP S K
Sbjct: 289 NALAAAAVAHELGMSADEIATALSEAGSLSRW--RMEVTERPDGVTVVNDAYNANPESTK 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
           AA+  L  +      R  AVLG M E+G+ + + H  +  +    N+S +   G      
Sbjct: 347 AALRALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREARW 404

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 405 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLESVATALLE 461


>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 460

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 216/470 (45%), Gaps = 19/470 (4%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI   + I       +  ++ DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAIGAENNIEQWKDVEITSVAFDSRQLDSGALFIPLQGAQ-DGHQYVESAFAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D   +      P+  VDD L +L +L+     +    ++A+TGS GKTTTK
Sbjct: 62  GAVATLWASDHDVTTTEDQ-PILVVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M    LS+         ++NN IGVP+TL  M    +  + E+GM   G++ FL+ LV 
Sbjct: 121 DMTASILSTQLNVTKTHANFNNEIGVPVTLLNMESSTEVVVVEMGMDRPGQLDFLSKLVS 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  AH+  F   ++IA AK EI  GL++ GT   N D+    LL+ ++  + 
Sbjct: 181 PDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGLKEDGTFIFNGDEP---LLQERAANVE 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG+    DF      Q       +V  +    E     +G +   N L  + + 
Sbjct: 238 QRKV-TFGRQLTDDFYATSVNQHETSIDFKVN-EWPDEEFTIPMVGEYNVNNALAAIAVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L        KA       E    R           ++ + YN+NP + K  +  + ++
Sbjct: 296 KQLHITPAHIKKA---LKNVELTENRAEWVNGAQGERILSDVYNSNPTAAKQVLKTIEEL 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G+RIAVLGDM E+G+ S   H  LA  +    I  V+L G  +  L+DAL +  +
Sbjct: 353 PT--TGKRIAVLGDMLELGDASARLHASLAANIDPKKIEEVYLVGSEMENLQDALEKQGY 410

Query: 424 ----VHYSETM--DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +H+  T   D L + +Q+++   D+V++K+S+     +++  L  +
Sbjct: 411 PASAIHHYSTAELDKLVVDLQATISADDLVLLKASHGIHLEKVLAELTTK 460


>gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 452

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSCPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 LVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
 gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 222/465 (47%), Gaps = 17/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++++A +G+         V  I IDSR      AF AI G + D H +I  A   G 
Sbjct: 5   TVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +VN      I S    +  VDD   AL  +    + +     I ITGSVGKTTT++M
Sbjct: 65  RVFIVNKGKDIDIKSDMN-IIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  ALSS + T     ++NNH GVPLTL  +    +  + E+GMS  GEI +L ++V P 
Sbjct: 124 VYAALSSERATLKNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGEIEYLANMVNPK 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVI+ I  +H+ N    E I  AK EI  G  K  T+ +N DD F   L+       + 
Sbjct: 184 VAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLSTLRDAERDYDL- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG  KN D     +    +    E  + G   ++    +G H   N +  + + ++
Sbjct: 243 --ITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAAIAVGTV 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   + LS F     R    +     G +T+I+++YNA+P SM+A++S+L +   
Sbjct: 301 EGISMEGIKRGLSNFEATGMRQDIRKI----GEYTVINDTYNASPDSMEASLSILGR--- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHV 424
             EGRRIAVLGDM EMG+L++  H  + +   + N   +   G   + + K+A      V
Sbjct: 354 -YEGRRIAVLGDMLEMGDLAEFGHRRVGK-ACVDNSDVIITVGESAVFINKEAEENGFDV 411

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              ++ + ++     +   +  GD ++ K+S    F + +  + E
Sbjct: 412 KNSYHFDNLEDAKKLLGEIMQSGDTMLFKASRGMKFEKFVEYVKE 456


>gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 452

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLSAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLTAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
 gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
          Length = 476

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 140/481 (29%), Positives = 211/481 (43%), Gaps = 30/481 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFVGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  V+ +         + +P   V+DV  AL  LA     R   T++A+TGS G
Sbjct: 60  RVVEAGAAAVLASRP-------VGVPAIVVEDVQAALGALARHVVGRLGTTLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLTALTATEETKFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
           T L  P + ++  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 173 TGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG+S  AD +    +          +     + +V     G H   
Sbjct: 233 ASRTKA----KVILFGESDEADVRAENVRLTDSGQPSFRLHTPSGACDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L    D   +ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGMPADEIARALSEAGSLSRW--RMEVTERPDGVTVVNDAYNANPESMR 346

Query: 355 AAISVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           AA+  L+   + S    GR  AVLG M E+G+ + + H  +  +    N+S +   G   
Sbjct: 347 AALRALAAMGKASQAKGGRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGRE 406

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + A  +       VH S+        ++S L  GDVV+VK+S S G   +   LL
Sbjct: 407 AAWLQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALL 465

Query: 466 E 466
           E
Sbjct: 466 E 466


>gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
 gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
          Length = 459

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 217/468 (46%), Gaps = 24/468 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G  IG      ++ +S DSR++  +  F A+KG ++DGH+F   AV  GA
Sbjct: 5   SLAELATRLNGQLIGD--DLPIDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V  ++             V +   A+ ++    R +   T +A+TGS GKT+ KEM
Sbjct: 63  NALLVERELPIDAA-----QIVVANSQRAMGEIGAYVREQLAPTCVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   +     G++NN IGVPLTL R+    +FG+FELG +H GEI + + LV+P 
Sbjct: 118 IATILSQQHRVLYTAGNFNNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGLVKPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  +E +A AK+EIF  +   GT  +N DD+F +++     A    
Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHVTVGGTAVINADDAFADVML---QASSHV 234

Query: 246 TIYSFGKSKNA----DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               FG    A    D         S   +   +    +   V     G H   N L   
Sbjct: 235 KQLCFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVHRVELPLAGRHQVSNALAAT 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L   +    + LS   P +GR          G  T+ID+SYNANPAS+ AAI  L
Sbjct: 295 SICLALGLSLAHICQGLSQLKPVKGRMLPSVL----GRVTVIDDSYNANPASVGAAIDWL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +I    +G R  VLGD+ E+G+ +   H +L  +     ++ ++  G        A   
Sbjct: 351 QEI----KGNRCLVLGDLGELGDNAALLHRELGALAKAKGVNSLFCVGTLSEGASHAFGS 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +    + + GL  +I + L     V+VK S S    R++  L   F
Sbjct: 407 KHYQDIDDLVAGLIQYI-NELPAEITVLVKGSRSARMERVVEALTTAF 453


>gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius CECT 5713]
          Length = 456

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 222/466 (47%), Gaps = 17/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  G
Sbjct: 3   MQLAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+
Sbjct: 62  AVATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P
Sbjct: 121 MTAAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+    LL  K+  +  
Sbjct: 181 DVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG   N D +       + ++  +V      ++   + IG +   N L  L + +
Sbjct: 237 QEVLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGN 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I    VD   KAL+ F     R +       +    ++ + YN+NP ++K  +    Q+ 
Sbjct: 296 IYHIPVDKMQKALASFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVP 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
               G+RI VLGDM E+GE +   H DLA+ ++   I  V+L G  +  L + L      
Sbjct: 353 TE--GKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIGSVYLCGELMGYLAEKLREKFDE 410

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             IH +  + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 411 TQIHHYQKDDLLTLTSDLKNELMPDDIVLLKASHGIHLENVVSELI 456


>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
 gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
          Length = 457

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 143/468 (30%), Positives = 224/468 (47%), Gaps = 24/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L  A+ G  +G         +  DSR+I P + F A++G  +DGH ++L A+Q 
Sbjct: 1   MMRLSELAAAVGGELVG--EDVLFTSVGTDSRNIVPGQLFIALRGERFDGHAYVLQALQS 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V                 V +   AL +LA   R R    + AITGS GKTT K
Sbjct: 59  GAAAALVAEAQPGMAAG-----VVVKNTRLALGQLAAVWRNRFSIPVAAITGSNGKTTVK 113

Query: 124 EMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EM+   L +         A  G+ NN IG+PLTL R+     + + E+GM+H GEIR+L+
Sbjct: 114 EMVASILRAEAGDSNAVLATRGNLNNDIGLPLTLLRLRPSHKYTVAEMGMNHFGEIRYLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP +A++     AHL     +E IA AK EIFEGL   G   +N DD +  L    +
Sbjct: 174 QMARPTVALVNNATSAHLGGLGSVEGIARAKGEIFEGLALEGMAVINADDLYAPLWTELA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G   I +FG +K AD     ++  ++ S++ ++     +       G H  +N L  
Sbjct: 234 ---GEHDILTFGLAKMADVTA-NYELRADTSYVYMKSPIGGIAFNLQVAGLHNVRNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A  ++  K L  F   +G   R +     G   +ID++YNANPASM+AAI V
Sbjct: 290 STVAIAMGARPESIAKGLEAFDGVDG---RLQHRAGIGQALVIDDTYNANPASMRAAIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G+R+ VLGDM E+GE + + H ++ +      I+ ++  G   L +  A  
Sbjct: 347 LAARP----GKRLLVLGDMGELGETAAAMHTEIGQYAREAGINGLYTLGDLSLEMSKAF- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +T + L   +   +    VV+VK S      R++ L++ E
Sbjct: 402 -GDPAHHYKTPEQLVAGLCHEMDANTVVLVKGSRFMRMERVVQLIVSE 448


>gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 440

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 198/460 (43%), Gaps = 24/460 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +        +    VN I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     ++  +          VDD L A   LA     ++K  +IA+TGS GKTTTK+
Sbjct: 63  AIISFSEKEVEQAH-------LLVDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +P
Sbjct: 116 MIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  AHL      E IA  K  I  GL   G +    D      +         
Sbjct: 176 ELALITLIGEAHLEFMGSRENIAKGKMGITAGL--HGELIAPADPIINAFIPEN------ 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I  FG     D  + K  +  E+   E     +S+       G + A N ++   +  
Sbjct: 228 QKISRFGLPGE-DLFITKLIEHKERLTFETNFLDESIT--IPVPGKYNATNAMLAAYVGL 284

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A       E    R     ++    L+ + YNANP +M+  +     I 
Sbjct: 285 HYGLTEAEIKNA---LKEVELTRNRTEWNKSKNGADLLSDVYNANPTAMRLILETFQAIP 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  GR+IAVL DM E+G  +   H ++ + +    I  V+L G  +  L D +     V
Sbjct: 342 KNENGRKIAVLADMLELGPTAAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKPV 400

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y   +D L   + + L   D V+ K SNS     ++  L
Sbjct: 401 SYFTDLDLLTESLSADLKPADQVLFKGSNSMKLSEVVEKL 440


>gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
 gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
          Length = 455

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 212/462 (45%), Gaps = 21/462 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   L  A+    +G       +G+SIDSRS+   E F A+ GP +DGHD++     KG
Sbjct: 5   MTLSQLTAALSARLVGA--DASFSGVSIDSRSVGAGELFVALAGPRFDGHDYLADVQAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  +    + ++ +P   V D   AL +L    R      ++AITGS GKTT KE
Sbjct: 63  AVAALVERE----VANVDLPQLVVADSRLALGQLGALNRAGYDKPVVAITGSSGKTTVKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +    +A  G+ NN +G PLTL  +       + ELG S +GEIR+   L +P
Sbjct: 119 MLACILRTRGPVHATRGNLNNDLGAPLTLLEIAPQHSAAVIELGASRIGEIRYTVGLTQP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +I     AH+  F G E+I  AK EI EGL + GT  LN DD  F + KA++ A   
Sbjct: 179 QVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGTAILNLDDKAFAIWKARAAA--- 235

Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + SF +S   ADF      + +       +   G S+ V  + +G H   N L     
Sbjct: 236 HKVISFARSDARADFHATDIGRDARGCPSFTLHGAGASVAVQLNVLGEHNVSNALAAAAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +      L+   P +G   R    +      +ID+SYNANP SM AAI +L+ 
Sbjct: 296 AHAVGLSLSGIAAGLNAMQPVKG---RTVAQIAPSGVRVIDDSYNANPTSMCAAIDILAG 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A     
Sbjct: 353 FS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGTNMTHAVKAF--GA 405

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  +  T   L   +++       +++K S S     ++  L
Sbjct: 406 NGRHFATQAELIEAVRAETASNTTILIKGSRSAAMENVVAAL 447


>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 216/474 (45%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++ +A+ G   G      V+ +S D+R+I     F A+ G ++D HDFI  A
Sbjct: 1   MISL-TLAEIARAVGGELKG--EDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V KGA  ++V+  +  +      P   V+D   AL KL        K   +AITGS GKT
Sbjct: 58  VIKGAAALIVSQKLQITT-----PHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEMLT  LS   +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMLTSILSQKGQVLFTQGNFNNDIGVPLTLLRAKPEDDFAVIELGANHIGEIDYTTR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +A++  +A AHL  F  I+ +  AK EI+ GL+      +N D +  +  +    
Sbjct: 173 LVNPDVALVNNVAAAHLEGFGSIDGVMQAKGEIYNGLKSGAVAVINLDSNGGQYWQD--- 229

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  KT+ +   +   AD+     +      +   +        +    +G H   N L 
Sbjct: 230 VLADKTVKTVSMNDSKADYFATDIQLNERGEASFIMTTPIGECVIQLSLVGQHNVANALS 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +     A ++     L+       R +            LID+SYNA+  +MKAAI 
Sbjct: 290 ATSLALEFGASLEDVKSGLNQLTKVSARAEVIELNKQ---IRLIDDSYNASVPAMKAAID 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +LS       G+R  +LG+M E+GE S + H  + +  + +   +V   G     + +  
Sbjct: 347 LLSNYR----GKRWLILGNMAELGEESLALHRQVGQHAAPFRFDYVLTYGADAKVISE-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             S  +H+ +    +  FI+  L         ++VK + S G   ++  + E F
Sbjct: 401 -ESDGIHFCD-HQSMIDFIKKQLGHEKAQQQTLLVKGALSAGMSVVVKAIKESF 452


>gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 462

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 219/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +A+Q  ++    P   V G++ DSR +   + F  + G + DGH +I  A++ 
Sbjct: 3   MQVAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEH 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    +    +PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L +         ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+
Sbjct: 121 DMIASVLGTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AH+  F   + IA AK EI  GL++ GT   N D+   +    +     
Sbjct: 181 PDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQERAKEVSQHQ 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG                 Q+  +  L           +G +   N L  L + 
Sbjct: 241 R----TFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAALLVA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    A +A++ F P E R +       +    ++ + YN+NP + +  ++  + +
Sbjct: 296 DTFHIRPAAAQQAIASFVPTENRTEWLTGYRGE---AILSDVYNSNPTAARRVLAAFAAV 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
               +G+RIAVLGDM E+G+ S + H+ LA  L    I+ V+L+G H+ AL + L     
Sbjct: 353 PT--KGQRIAVLGDMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYP 410

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++H + ++    L   + +++   D V++K S+     +++  L
Sbjct: 411 AGAVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 456


>gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 452

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 218/465 (46%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G++NN IGVP+TL R+  D D+ + ELG +H G I +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGAIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAIKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2]
          Length = 471

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 218/468 (46%), Gaps = 27/468 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I G   G      V+ +S D+R+I     + A+KG +++GH+F   A   GA
Sbjct: 5   TLSWIASQIDGKLDGQ--DCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +  +     ++SIPV  V+D   AL  L  A +       IAITGS GKTT KEM
Sbjct: 63  SAIIASEPV-----NVSIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L       A  G++NN IGVPLTL R+    ++ + ELG +HLGEI + T+LV+P 
Sbjct: 118 CAAILERRGSVLATNGNFNNDIGVPLTLLRLEHHHEYAVMELGANHLGEIAYTTNLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A I   A +HL  F  +  +A AK+EIF+GL  +GT  +N D  F +  + K   L  K
Sbjct: 178 VATIVNAAASHLEGFGSLLGVARAKSEIFKGLGDSGTAIVNVDSQFADFWQGK---LKQK 234

Query: 246 TIYSFG--KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + +F   +   ADF         +  +  ++        +     G H   N+L+   +
Sbjct: 235 RVLTFSPMQKNEADFTAEDIIVGLDGCAAFQLCSNEGEAAIQLIIPGIHNVGNVLVAAAL 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L A ++     L      +G   R           L+D++YNAN AS+ AAI  LS 
Sbjct: 295 TMQLGATLENVRDGLLAMKQVKG---RLNVKTLGSQVRLLDDTYNANVASVNAAIDTLST 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---ALKDALP 419
            S    G  + +LGDM E+GE ++ +H  +        I +++  G       A+ DA P
Sbjct: 352 FS----GINVLILGDMKELGEKARFYHEQVGNYALSKGIDYLYSFGVLSQSASAVFDAAP 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
              +  +   +D L   ++  L     D+ ++VK S S    R++  +
Sbjct: 408 -GKNGEHFTDIDSLVSALEQDLQVEQQDISILVKGSRSSRMERVVEAI 454


>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
 gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
          Length = 449

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 243/460 (52%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L  A+    I I      N +  +S+ +   + F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAALG---ITISNSINCNEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIISKRVEINDK---YKIILVDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L ++L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVSLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+       +    +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGEMINIQNCR----VICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L + I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELIMHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 456

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 230/465 (49%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + + +   +    P+  V G+SID+R+I   + F   +G   +GH F+  A +KGA
Sbjct: 4   SLQQIAEWLTIEN-QSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         +P+  V+D   AL K+A   R   +AT I ITGS GKT++K++
Sbjct: 63  AASLWMIDEPNPPA--HLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTSSKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L  ALS   K    IG++NN +G+P+T+ ++  D +  + E+GMS  GEI FLT+L RPH
Sbjct: 121 LAGALSPYFKVQKTIGNFNNQLGLPITILQLDEDTEVSVLEMGMSGFGEIEFLTNLARPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AH+ +    E IA AK EI +GL + G +F + D+   + L AK+  L  +
Sbjct: 181 YAIITNIGEAHMQDLGSREGIAKAKFEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKTQ 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +FG S+  +    + K  ++ S   V+  +QG   +     +G H  +N L  + + 
Sbjct: 241 ---AFGFSQELNLAASQIKATAQGSSFHVEGLIQG---DFFISVLGEHQVKNTLSAMLVS 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   +AL      + R +        G    I+++YNA P SM AAI  + Q 
Sbjct: 295 KSLGLTDEQIREALKKVVLTDMRMQLVPV----GDLLFINDAYNAAPTSMHAAIQFVEQT 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           +   E  +  VLGDM E+G   +  H  +A  +    IS+V L G  +  L + L     
Sbjct: 351 TIRNE--KWLVLGDMLELGNEEKKMHEGIAGHIHPEEISYVCLYGPRMKWLYNKLQETFD 408

Query: 421 SIHVHYSETM-DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + H+ YSE     +   IQS   +  +++VK S      ++I+ +
Sbjct: 409 AEHLVYSENEYAPIIEKIQSHATNESILLVKGSRGMKLEKIIHSI 453


>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 469

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 218/472 (46%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T  +L +   G  I   P   ++ +S D+R +   E FFA+ G  +D H+F+  A
Sbjct: 1   MKPV-TLKELERIACGRIIQGDPGTVLSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG +VV+       G   +PV  V++ L AL  LA   R    A ++A+TGS GKT
Sbjct: 60  AGAGAGCLVVSRTADLPAG---VPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M    LS+  +T    G++NN IG+PLTL R+    +  + E+ M   GEI  L  
Sbjct: 117 TTKDMTASILSTRLRTLKSEGNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEIDALCR 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  AVIT I  AHL     +  IA+AK E+ E +   G   LN +  F      +  
Sbjct: 177 IAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRREAGRCR 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +  +G    AD +    +     S  EV L G+  E      G H   N L  +
Sbjct: 237 G----KVIYYGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMNALAAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   L    +   + L+       R +            +I+++YNANPAS KAA+ VL
Sbjct: 293 GVARELGLTWEEVARGLAAVTLTGMRLEIIEAK----NLRIINDAYNANPASAKAALQVL 348

Query: 361 SQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--- 416
            +++    GRR +AVLG+M E+G  +   H ++ E  +   +S +   G     + +   
Sbjct: 349 KEMA---GGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGDLAAGIAEGAL 405

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              LP       ++ M      ++  + DGDVV+VK S       ++  LL+
Sbjct: 406 DAGLPAERIFRCADNMQAAG-ILEELIRDGDVVLVKGSRGMKMEEIVRCLLK 456


>gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
          Length = 476

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 172/473 (36%), Positives = 250/473 (52%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G       Q    G+SID+R++   + F A+     DGHDF+  A+ K
Sbjct: 3   LWTSAEAAEATGGT---TTSQWNATGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQALDK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+            P+  V+DV GAL  L  A R R    ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVSHVPPGVPED--APLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   + +A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  +  
Sbjct: 117 EMLLAMLSDQGRAHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAA 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+A AHL  F  I  IA  KA IFEG+   G   LN D     +L AK+    
Sbjct: 177 PHVALITTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQDCR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ I +FG+    DF+L +     + + +  ++    +    +  G H A N L  + ++
Sbjct: 237 LRDI-TFGEH-GYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVM 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
           + L  DV  A+ +L  + P +GRG+R R  L+    + F  LID+SYNANP SM AA+ V
Sbjct: 295 AALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEV 354

Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L      + I    +GRRIA LGDM E+G    + H  LA + +   I  +   G  + A
Sbjct: 355 LAAAEVTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRA 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L DALP      + E  +     +++ +  GDVV+ K S S     +++ + +
Sbjct: 415 LYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVLAKGSLSMKLACVVDAIRK 467


>gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
 gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
          Length = 452

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 220/473 (46%), Gaps = 27/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L + + G  IG      +  +S D+R+I P   F A+ G  +D HDF  +A
Sbjct: 1   MINMM-LSQLAEYLDGQLIGQ--DVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFASNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+  +  S      P   VDD   AL K+        +   +AITGS GKT
Sbjct: 58  VEAGASALLVSKALDCST-----PQLLVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   + +  +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL+      +N D    E  +    
Sbjct: 173 LVQPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLKPGSVAIVNLDSHGGEYWQ---Q 229

Query: 241 ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  K +  F  S + ADF  R     +   +  E+  +  +  V    IG H   N L 
Sbjct: 230 VLADKRVVHFSVSDDSADFFARNITMSTAGEASFELVSRQGTFSVELGIIGQHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L A ++     L      +G   R          TLID+SYNA+  +MKAA  
Sbjct: 290 ASALAFELGATIEMVQSGLKHLAKVKG---RVESVSLTDKITLIDDSYNASVPAMKAAAD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +LS       G R  +LG+M E+G+ S + H  + E  + +   HV   G    A+ +  
Sbjct: 347 LLSSF----GGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTFGADAKAISE-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468
                  + +T + +  FI+  L + +    ++VK +NS G  ++   L E +
Sbjct: 401 --QCQGKHFDTHESMIEFIKQQLANHNGAQTLLVKGANSAGMSKIAAALKEMY 451


>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
 gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/491 (24%), Positives = 200/491 (40%), Gaps = 32/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++   + G      P   V G +  D+R +     F A+ G   DGHDF   
Sbjct: 1   MIVL-SLAEIADVVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQ 59

Query: 60  AVQKGAGLVVVNTDM-----------VASIGSLSIPVFGVDD--------VLGALNKLAV 100
           AV+ GA  V+   ++                  S+ + G  D         L  L +  V
Sbjct: 60  AVEAGAVAVLAAREVDAPAIVVPPLAAGEAHERSVALTGDKDGSGAAVLAALAKLARYVV 119

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                 + T++ +TGS GKT+TK+++   L  +  T A  GS+NN +G P T  R   + 
Sbjct: 120 QRLAEGELTVVGVTGSSGKTSTKDVIAQLLEPLGPTIAPPGSFNNELGHPWTALRAGAET 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL     G I  L  +  P I V+  +  AH+  F   E IA  K E+ E L + 
Sbjct: 180 RHLVLELSARGPGHIAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKGELVEALPED 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
           G   LN DD     + +++ A     +   G+S +A  +        E ++   +     
Sbjct: 240 GVAVLNLDDPLVAAMASRTKA----RVVFVGESPSAQVRAENITLDDEARASFRLITPAG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V     G H   N L    +   L A  +     LS    +    +R          
Sbjct: 296 EAGVKLPLHGEHHVGNALSAAAVALELGATPEEIATRLSALERRSA--RRMEVVTRPDGV 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++++S+NANP SM+A +  L+ ++     R  AVLG M E+G  S + H ++  ++   
Sbjct: 354 TILNDSFNANPESMRAGLKALAAMTRETGRRSWAVLGVMGELGADSVTAHDEIGRLVVRL 413

Query: 400 NISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           NI+ + + G    A+     +             ++     +   L  GDVV+VK+S + 
Sbjct: 414 NIAKLVVIGPEAAAMHQGAHQEGSWGEESTLVPDVEAAAALLHDQLRPGDVVLVKASKAA 473

Query: 456 GFYRLINLLLE 466
           G +R+   LLE
Sbjct: 474 GLWRVAEALLE 484


>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
 gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
          Length = 476

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 223/475 (46%), Gaps = 21/475 (4%)

Query: 1   MNPLW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P W   +  ++++A+ G+ +   P+      + DSR + P + F+A+KG  +DGHDF+
Sbjct: 1   MAPRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPGDLFWALKGERFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             AV++GA  VVV  +   S+ +   I V  VD+ L AL  LA   R +  A + AITGS
Sbjct: 61  HQAVREGASGVVVQREYTISVENRPEIAVIAVDNTLRALGDLAAWWRRQHTAKLAAITGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM    L    KT    G++NN IG+P+TL ++       + E+GM+H GEI 
Sbjct: 121 SGKTTAKEMTAAILEMENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEMGMNHKGEIA 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  P  A I  +  AHL     ++ +A AK E+         I LN DD+      
Sbjct: 181 RLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNGDDAVLMKHA 240

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            K      +   +FG  K         +    +    +++    +  +     G H  +N
Sbjct: 241 TKF----DRKFVTFGMKKGNHIHAVNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKN 296

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK- 354
            L    I   L   V+   + L  F   +G   R++C   +G   LID++YNANP++++ 
Sbjct: 297 ALAAAAIALSLKEPVENIARGLRNFKGVKG---RFQCIPLEGDIILIDDTYNANPSALET 353

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
           A +S L  +    +GR I  LGDM E+GE + S H +    ++    S ++  G H    
Sbjct: 354 ALLSALKMVD--RDGRLIVGLGDMLELGEAAVSAHREAGSRIAESGASRLFFMGTHGEHV 411

Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              A+   +P S HV  SET D L   I       DV+ +K S    F ++   L
Sbjct: 412 RNGAIAAGMP-SNHVIISETHDELTANIIRKARPKDVIFLKGSRKMQFEKVSEGL 465


>gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           6-diaminopimelate--D-alanyl ligase [Rickettsia
           montanensis]
          Length = 449

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 241/460 (52%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L  A+    I I      N +  +S+ +   + F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAALG---ITISNSINCNEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  I ITGSVGKT+TK
Sbjct: 58  GAAAVIISKQVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELMTHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
 gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
          Length = 459

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 209/466 (44%), Gaps = 23/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +   + Q   G  +        V+ IS D+R++A    F A++G  +D H F+  
Sbjct: 1   MIPM-SLAQIAQVTDGQLLNCPDATQTVSHISTDTRTVAAGALFLALQGERFDAHQFVAQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV        V   +   +  +SIP   V D   AL ++A   R +    I+AITGS GK
Sbjct: 60  AV----AKGAVAAVVSRPLADVSIPQILVADTRIALGQIAAWVRAQLDLQIVAITGSCGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEM    L       A  G+ NN IGVP TL R+  D  + + ELG +H GEI + T
Sbjct: 116 TTLKEMCAAILQQAAPVLATQGNLNNEIGVPQTLLRLTPDDRYAVVELGANHPGEIAWTT 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV+P +AVI  +A AHL+ F  +  +A AK EIF GL  +GT  +N D  F++  +   
Sbjct: 176 SLVKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSGLSDSGTAVINADSEFYDWWREIL 235

Query: 240 HALGIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   +SFG ++  ADF+     Q  +  +   +      +++     G H   N L
Sbjct: 236 SV----RTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQIDIQLPIPGLHNVSNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + + L   +      L+   P +GR    + +      TLID++YNA+  S+ AAI
Sbjct: 292 AAAAVTTSLGLSLVQVQSGLANMLPVKGRFCVQKLS---DDLTLIDDTYNASVQSVMAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +     G R+   GDM E+G  +   H  + E   L  +  V+  G       +A
Sbjct: 349 DTLAVMP----GYRVLAFGDMGELGADAADLHRQIGEHARLKKLDAVFTVGELSRHTAEA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLI 461
              S    +    D L+  +Q+ +       ++ K + S     ++
Sbjct: 405 AAAS--GQHFANKDSLYQALQTLMQHQRPMTILAKGARSARMEEVV 448


>gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           CECT 5716]
          Length = 459

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H  +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPADGY-PRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+       AK     
Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEPLLRERAAKLS--- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D          +     V  Q          +G +   N L  + + 
Sbjct: 238 -QQTKTFGRQLDDDLYATSVNPDVDHVSFTVN-QWPDEVFTIPLVGEYNVNNALAAMTVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++        +A       E    R           ++ + YN+NP ++K  ++ L+ I
Sbjct: 296 KLMHVTPANMKQA---LQNVELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
                G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++  
Sbjct: 353 P--VAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H + +     L   +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459


>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 455

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 213/465 (45%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +    +       V+GISID+R+I   + F   +G H +GH ++  A +KGA
Sbjct: 4   TLKQLAAWLN-EDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +   D         IP+  VDD   AL ++A A RL  KA  I ITGS GKT+TK++
Sbjct: 63  GASLWQKDEPNPPDG--IPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   K    IG++NN +G+P+T+ ++  D +  + E+GMS  GEI FLT L +PH
Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I  AH+ +      IA AK EI +G++  G +F + D+   + L AK   +   
Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQPEGLLFYDGDEPLLQELVAKEQHINA- 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +FG   +           +  S       ++G   +     +G H  +N L+ + I 
Sbjct: 240 --VAFGLEPDNLLYADHIHANANGSSFTTHGMIEG---DFFISVLGKHQVKNTLIAMLIS 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L  + +    +            R +          I+++YNA P S+KAAI  ++  
Sbjct: 295 NQLGLNNEQIRTS---LEHVVLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATS 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +   E  +  VLGDM E+G   Q FH  LAE ++   I +V L G  +  L + L     
Sbjct: 352 TIRPE--KWLVLGDMLELGPDEQRFHEGLAEYINEQEIDYVCLFGARMTHLYEVLKEDFE 409

Query: 424 V----HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  +    +   +     +  +V++K S      +++   
Sbjct: 410 ADRLLYTEDDYTAIIEKL-ELANESSIVLLKGSRGMKLEKILQAF 453


>gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 452

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 217/465 (46%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G     +  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
            +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 405 EHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
 gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
          Length = 472

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 168/472 (35%), Positives = 236/472 (50%), Gaps = 21/472 (4%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  D+  A+ G   G       +G++ DSR + P + F A+KG   DGH F+  A  
Sbjct: 4   PLWTAFDIAAAVDGEVYG---DFRTDGVTFDSREVGPGDLFIALKGETTDGHRFLDKAFA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V+            P   V D + AL+ L  AAR R    +I +TGSVGKT T
Sbjct: 61  AGAAGAIVSDACDG-------PHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGT 113

Query: 123 KEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE L   L      + +  + SYNNH GVPL+LARMP D   G+FE+GM+H GE+  LT 
Sbjct: 114 KEALYACLDRALPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELAALTR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++T IAPAH + F+   +IA AK EIF+GL+  G   + YD    + L A + 
Sbjct: 174 LVRPHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIAAAK 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + I +FG  + AD   +        + + + L    +       G H   N +  +
Sbjct: 234 PHAAR-ILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMAVI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-----TLIDESYNANPASMKA 355
             V  +  D+  A  A +      GRG+R   A+  G        LIDESYNANPASM A
Sbjct: 293 AAVWAVGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASMAA 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I +L +       RR+AVLG+M E+G  S  +H DLA  L    +    L G  + AL 
Sbjct: 353 TIKMLGRERAD---RRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMAALA 409

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +AL   I   +    D     I++ +  GD +++K SN+ G  RL+  L  +
Sbjct: 410 NALEGRIEFEHVPDADAAIESIEAKIAPGDAILIKGSNAIGLSRLVAHLRTK 461


>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
 gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 213/474 (44%), Gaps = 29/474 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +++A  G  +    +  +  IS+DSR+++  + F  I G   D H FI  A+  GA 
Sbjct: 6   VKQVMEAANGRLLCGNEEQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAV 65

Query: 67  LVVVNTDMVASIGSLSIP----------------VFGVDDVLGALNKLAVAARLRSKATI 110
            V  +     S    +I                    V+D   AL  L    R R    +
Sbjct: 66  AVFTSAHRDISQVEKAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPL 125

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + ITGSVGKTTT+EM+  ALS+    Y   G+ N+ +GVP+T++ +P + +  + ELGMS
Sbjct: 126 VGITGSVGKTTTREMIAAALSAGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVIELGMS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             GE+  +  +     AV+T I  AH+      E I   K  I +G+   G +F+N DD 
Sbjct: 186 EPGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNPEGILFVNGDDP 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L A   A G + I  +G S   +++    +              K   V    +G 
Sbjct: 246 ----LLADIQAEGGRRIIRYGMSAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQVMGT 301

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           HM  N +  L + +    D++ A + L  F   +GR + +         T+ID+SYNA+P
Sbjct: 302 HMVGNAMAALAVAAEYGVDMEEAARKLGEFGGYKGRQQIH----GFQGMTIIDDSYNASP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SMKA + VLS + P    R+IAVL DM E+G  +  FH ++   ++ + +  V L G  
Sbjct: 358 VSMKAGLEVLSSMKP--GARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLLYGEL 415

Query: 411 VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             A+ + L  +          +++ +  +++     GD ++ K SNS      +
Sbjct: 416 AAAIGEGLREAGGQSPFLLCGSLEQVKEWLKRETKSGDCILFKGSNSMKLGDAV 469


>gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
 gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
          Length = 457

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 218/471 (46%), Gaps = 27/471 (5%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +   + G  I  G      +N +S D+R++     F AI G  +D HDF   AV+ 
Sbjct: 5   SLEQICSVVSGELIEAGNSNNNVINAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R     D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +        L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWNE---VLA 236

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            KT+ +F + S+ AD+     +   +  +  ++Q    +  V    IG H   N L    
Sbjct: 237 DKTVLTFSEGSREADYFAENIEINDQGEACFDMQTPQGATAVELGIIGQHNVTNALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     A +D     L+     +GR +  + + N     LID+SYNA+  +MKAA  +LS
Sbjct: 297 LSIQFGATLDEIKSGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +     
Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV---- 405

Query: 422 IHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  +  T   +   I+  L         ++VK +NS G  ++   L E F
Sbjct: 406 CNGTHFATHQAMIAHIEQHLRLPENASHTLLVKGANSAGMSKIAAALKENF 456


>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
 gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
          Length = 453

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 209/461 (45%), Gaps = 17/461 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL Q +    I IV    + GI+IDSR +   + F    G + DGH++I  A +KGA 
Sbjct: 5   VKDLEQILNAKKINIVENKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEKGAA 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   +   S  +    +  V+D   A+  LA        A IIAITGS GKTTTK+++
Sbjct: 65  ASLSLKEDFTSDNN----IIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNGKTTTKDII 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  L +  K +   G++NN +GVP+T+   P D +  + E+G    G++ FL+ LV P  
Sbjct: 121 TGLLETKFKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADGFGQLDFLSKLVEPDY 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  +H+  F   E IA AK EI  G++K G    N D+   + L  KS+      
Sbjct: 181 TVITNIGESHIEFFGSREGIAKAKFEITNGMKKDGFFVYNGDEVLLKDLVDKSNIGAT-- 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S G++   +  L  +    +    ++ L  +         G H   N++    I   L
Sbjct: 239 --SCGENDYNNIILENYTITRDHIDFKLNLSDEKFTTKLK--GKHNLFNIMFATAIAEKL 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D   KA+      E    R           +I+++YNA+P SMKA++ V+S     
Sbjct: 295 GLSIDEIRKAIE--KTSEITHMRLESIPYGKDSLIINDAYNASPTSMKASVDVVSGFDDF 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLSGFHVLALKDALPRS-IH 423
               +  VLG M E+G     +H ++ E +S    +I  V   G     + D +  S I 
Sbjct: 353 DY--KTLVLGSMFELGSKEVQYHSEVGEYISNNSKDIDLVISVGDLAKNITDNITNSEIK 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  + + +  +++ +    +V++ K+S S     +I  +
Sbjct: 411 KLHFSSNEEVSNYLKENKHANEVILFKASRSMKLESIIEEI 451


>gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
          Length = 454

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 127/474 (26%), Positives = 208/474 (43%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +         P   VDD L A  +LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSERKVEGH------PYILVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 117 MIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HI V+T I  AHL  F   ++IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIGVVTLIGEAHLEFFGSRDKIAKGKLQIVDGMDSDGILIAPADSIVDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG    A+  +   ++  +       +  + +       G + A N ++   
Sbjct: 230 --GQMVIRFG--DGAEISVNDLQESKDSLTFTTNVINRPIT--LPVPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    D  ++A       E    R           ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAISDDDIVEA---LENIELTRNRTEWKKAANGADILSDVYNANPTAMRLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I  +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     + 
Sbjct: 341 KIPANSGGKKIAVLADMKELGEQSVELHKRMIMSLSPDVLDTLIFYGEDIAELAQLASQM 400

Query: 422 I---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V+Y       +  D +   +Q+ L   D +++K SNS    +++  L +
Sbjct: 401 FPLGKVYYFKKTADEDQFDDMLKTVQTVLQPADQILLKGSNSMHLAKVVEALEK 454


>gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
 gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
          Length = 467

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 216/446 (48%), Gaps = 13/446 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +  D+R + P   F  + G   DGH +I  A+  GA   + + D   +  S  +
Sbjct: 24  QISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSADPAQA-PSDDL 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL  LA   R      ++ +TGS GKTTTK+M  + L +  + +   G+Y
Sbjct: 83  AVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHKTQGNY 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P TL +MP D    + E+GMS  GEI+ L+ + +P IA IT I  +HL      
Sbjct: 143 NNEIGLPYTLLQMPEDTQVAVIEMGMSDFGEIKQLSEIAQPDIAAITLIGESHLEFLGSR 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRK 262
             IA AK EI  GL+  G +    ++   E  +      + ++   SFG + +AD     
Sbjct: 203 AGIAQAKLEILYGLKPNGVLLYPANEPLIESEMPEIDQPIYLR---SFGFTDHADAFAYD 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             +  ++++ +  L+  ++      +G +   N L+ L +  +L   ++ AI  L+ F  
Sbjct: 260 MVEEVDRTYFKTNLE-PNVTCTIPVLGAYNVSNALIALSVAELLDVPLEQAIFQLANFQL 318

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R           L++++YNA+P S+ A +  L+ ++     RRIAVLGD+ E+G
Sbjct: 319 TA---NRLEWLTTHQGARLLNDAYNASPTSVLAVLKSLAALNLAPGQRRIAVLGDVRELG 375

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSE-TMDGLFLFIQ 438
           E S   H  LA+ L+  +   V+L G  + +L + L     + H+ Y       L   +Q
Sbjct: 376 EASAQLHRSLAQGLAPESFERVYLFGPEIASLYETLQDRYEASHLFYEPADHSRLIAQLQ 435

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L D D+V+VKSS      +++  L
Sbjct: 436 ADLTDKDLVLVKSSFGTDLLQVVTAL 461


>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
 gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
          Length = 456

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 217/466 (46%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L     + QA+QG  IG      ++G+S D+R+I   + F A+ G ++D HDF+  A
Sbjct: 1   MNWL--LSQVAQAVQGRLIGA--DVSIDGVSTDTRAITEGQLFIALAGENFDAHDFLAPA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V  +     G   +P   VDD   AL +LA A R +    +IA+TGS GKT
Sbjct: 57  IAAGATALMVADESKVPTG---VPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKT 113

Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           TTKEM+   L +       +  G+ NN IG+PLTL  +       + E+GM+H GEI +L
Sbjct: 114 TTKEMVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +A+IT    AHL     ++E+A  K  IF GL   G   +N DD++  L +  
Sbjct: 174 APIGAPTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADDAYAGLWRGM 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +   G + + +FG    AD   +  +Q   +  +E+        ++    G H A+N + 
Sbjct: 234 A---GGRPVRTFGIDNAADVSAK-VRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +   I  L  F   +GR +R      +    ++D++YNANP S++A I 
Sbjct: 290 AAAACLAAGIPMVAVIAGLEAFSGVKGRLQRR---TGKQGAEILDDTYNANPDSVRAGID 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+       GR++ VLGDM E+GE S  +H ++        I  ++  G          
Sbjct: 347 VLAAT----IGRKLLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLFALGEAAQQAVRNF 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 HY   +D L   +   L     V+VK S      R+ + L
Sbjct: 403 GEGAK-HYC-NVDKLIAAVDKELGPETTVLVKGSRFMKMERVADAL 446


>gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica W22703]
          Length = 454

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 217/466 (46%), Gaps = 23/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + H L   +    IG      +  ++ID+R + P   F A+KG  +DGHDF   AV  GA
Sbjct: 5   SLHFLSTLLNAEYIGRD-SVDITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  ++        P   V D   AL +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 64  GALLVSKHLLVEA-----PQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T L RP 
Sbjct: 119 VAAILRQCGKVLYTSGNFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPE 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H    K
Sbjct: 179 SALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---K 235

Query: 246 TIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ F     ++ DF     +   + ++  +     ++ +     G H   N L    + 
Sbjct: 236 RVWRFSPHGAEDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +    + L+      GR      A  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 296 MSVGASLAAVREGLTQLQAVPGRLFPIELAAGK---LLLDDSYNANVGSMTAAAQVLAEM 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+GE +   H  + E      I+ V   G     L DA     H
Sbjct: 353 P----GYRVMVVGDMGELGETAVDCHRQVGEAAKQAGINKVLSVGALSQTLSDASGCGEH 408

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
               +  + L   +   L++  V  V++K S S     ++  L E+
Sbjct: 409 ---FQDKNTLAARVSELLLEHPVITVLIKGSRSAAMENVVRALQEK 451


>gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 459

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H  +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPADGY-PRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+       AK     
Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEPLLRERAAKLS--- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D          +     V  Q          +G +   N L  + + 
Sbjct: 238 -QQTKTFGRQLDDDLYATSVNPDVDHVSFTVN-QWPDEVFTIPLVGEYNVNNALAAMTVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++        +A       E    R           ++ + YN+NP ++K  ++ L+ I
Sbjct: 296 KLMHVTPANMKQA---LQNVELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
                G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++  
Sbjct: 353 P--VAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H + +     L   +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459


>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 460

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 214/453 (47%), Gaps = 21/453 (4%)

Query: 18  SIGIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
             G+VP  F+        ++ DSR + P   F A  G  +DGHDF   A++ GA  VVVN
Sbjct: 10  LAGLVPADFIREEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVN 69

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +               D   A+  +    R +    ++ +TGSVGKTTTK+M   AL+
Sbjct: 70  HPVEGVPAE---KAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALA 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              +T    G+ NN +G+P TL R+  + ++ + E+GMSH GEI  L    RP + +IT 
Sbjct: 127 GFGETIKTEGNQNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITC 186

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I  +H+ N    E I  AK EI  GL +   + LNYDD F    K  +H   +K ++   
Sbjct: 187 IGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDKFLRAAKLPAH---VKPVWFSL 243

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +NAD      +Q  +     ++ Q + +  V    +G H   N L      + L  D 
Sbjct: 244 ADENADVCALSIRQEEDGMSFVLEDQEEGTFVVKIPAMGKHNVANALAAYCAATRLGCDP 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              IK LS F      G+R +   ++G  T+I++ YNANP SMKAA+++  +       R
Sbjct: 304 RGVIKGLSNFEQT---GRRQKVVHSKG-VTVIEDCYNANPDSMKAALAMFKEFP---CKR 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSET 429
           R A+LGDM E+GELS+  H +L  + +  ++  +   G +       A  + +   ++  
Sbjct: 357 RFALLGDMLELGELSREAHEELGRLAAESDLYCLVTYGENAKRTAVVAAAKGVKTLHANN 416

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                  + + +  GD ++VK+S      +++ 
Sbjct: 417 YREAADALLNRIEPGDALLVKASRGMALEKVLE 449


>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
 gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
           rickettsii]
 gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 449

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 240/460 (52%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L   +    I I      N +  +S+ +     F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAVLG---ITISNSINCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHQGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSAKTSAELMLYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
 gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 212/471 (45%), Gaps = 28/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L     ++   Q           +  ++ID+R +     F A+KG  +DGHDF  +A
Sbjct: 1   MSTLLNAEYIISDTQ------RNNIEITEVTIDTRQVTGGCLFVALKGERFDGHDFAENA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +V+    +  P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 55  -----VAAGAGALLVSKRLLVGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 110 SVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  ++ AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 170 LSRPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               K ++ F     ++ DF   + +  ++ +   +     +  +     G H   N L 
Sbjct: 230 ---HKRVWRFSSQAGEDIDFFASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIANALA 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + AD+    + L+      GR    + A+ +    L+D+SYNAN  SM AA  
Sbjct: 287 AAALAMSVGADLAAVRQGLTQLQAVPGRLFPIQLAVGK---LLLDDSYNANVGSMTAAAQ 343

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+G+ +   H  + E      +  V   G     L DA 
Sbjct: 344 VLAEMP----GYRVMVVGDMAELGDTAIDCHRQVGEAAKHAGVDKVLSVGKLSQTLSDAS 399

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
               H    +  D L   +   L++     V++K S S     ++  L E+
Sbjct: 400 SCGEH---FQDKDTLAARVSELLLEHPIITVLIKGSRSAAMENVVRALQEK 447


>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 436

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 220/465 (47%), Gaps = 30/465 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  +L    +G   G       +G  IDSR +     F A++G  +DGHDF   A
Sbjct: 1   MGEL-SARELASICRGKLYG--ESTTFSGFCIDSREVKEGNVFVALRGGRHDGHDFAQEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V   +    G   +    VDD L AL ++A+  R      +I + GS GKT
Sbjct: 58  FSRGAVGAIVQRGIKVPKGKFYV---LVDDTLEALRRIALYRRRLFTGRVIGVAGSAGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   LS I K      +YN+ IG+P ++A    D  F + E+G S  G+++ L  
Sbjct: 115 TTKEMIAFLLSKIGKVCKTPKNYNSQIGLPFSIANFEEDCQFWVVEMGASQKGDVKNLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+ VIT I   HL  F  ++++     EIFE +++     L          K  SH
Sbjct: 175 LAKPHVRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAVLP---------KYVSH 225

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K + +FG  +  D Q    K   E    +V    + + +        + +N L +L
Sbjct: 226 CYELKNVITFG--EGGDLQATNIKLSKEGITFQV----EDVSLSLRVPSLAVLENALCSL 279

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++  L  +       L+ F P   R    R    +G F +ID++YNANP S++ A+  L
Sbjct: 280 GVLKALGYNWKELSHHLANFSPAPQRFHLIR----KGSFLIIDDTYNANPPSVRKALLSL 335

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALP 419
           S      +G RIA+LGDM E+G +S+++H ++ ++ +   I      G H+  A ++ L 
Sbjct: 336 SLF----DGYRIALLGDMLELGPMSEAYHREVGKLCAELGIDACIFYGTHMRFAYEECLR 391

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  ++S + +    ++ S + +G V++VK S       L+  +
Sbjct: 392 HGVLCYHSSSKEEALRYLSSLIREGSVILVKGSRGMKMEDLVREI 436


>gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 459

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H  +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPADGY-PRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+       AK     
Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEPLLRERAAKLS--- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D          +     V  Q          +G +   N L  + + 
Sbjct: 238 -QQTKTFGRQLDDDLYATSVNPDVDHVSFTVN-QWPDEVFTIPLVGEYNVNNALAAMTVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++        +A       E    R           ++ + YN+NP ++K  ++ L+ I
Sbjct: 296 KLMHVTPANMKQA---LQNVELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
                G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++  
Sbjct: 353 P--VAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H + +     L   +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459


>gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Weissella cibaria
           KACC 11862]
          Length = 454

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 205/465 (44%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++  AI    I       V   + DSR       F  +   + DGHD++  AV  GA
Sbjct: 4   TLQEMATAINAEIINAA-DVAVTSTTFDSRKAEAGSLFVPLVAAN-DGHDYVASAVANGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +   D         +P   V D L A  +LAV    + +  ++AI+GS GKTTTK+ 
Sbjct: 62  TVTLWQADHPNVPTD--VPTLVVADTLVAFQQLAVYYLKQVQPKVVAISGSNGKTTTKDF 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +S  KT     ++NN IGVP T+  MP D +  + E GM   G++ FL+ +V P 
Sbjct: 120 VAAIGASTFKTVKTPANFNNEIGVPTTILSMPADTELLVIEFGMDRPGDLTFLSEMVHPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I  AH+  F   E IA  K EI  GL+  G +  N D+    LL+ ++      
Sbjct: 180 IAVLTMIGEAHIEFFKTRERIADGKMEIIAGLQPNGVLVYNGDEP---LLRERAGQHAFL 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG + + D            +    Q    +M       G +   N L  + +  +
Sbjct: 237 HTATFGLNPDNDLYASTIAMNPVGATF--QTDKSAMTYHIPLTGRYNVSNALAAISVGIL 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    D   +AL+     E R +            ++ + YN+NP + K  +   ++   
Sbjct: 295 LGISDDKIAQALAEAPITENRTEWLAGNFGGK---ILSDVYNSNPTAAKEVLHFFAETP- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PR 420
              GRRIAVLGDM E+GE   + H  LAE L    I HV+L G  + +L+D L       
Sbjct: 351 -VTGRRIAVLGDMLELGEAGPALHASLAEKLDPATIQHVYLVGDIMASLEDVLSVNYPAG 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           ++  +  +    L   +Q+ L   D V++K S+      ++  L+
Sbjct: 410 TVKRYSKDDKATLIADLQADLTADDAVLLKGSHGIHLEEVVTALV 454


>gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
 gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
          Length = 453

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 139/465 (29%), Positives = 204/465 (43%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   AV  GA
Sbjct: 5   SLSHLAQLTQGQLIGD--DATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V          L +    V D   AL +L      R +   +AITGS GKTT KEM
Sbjct: 63  VALLVER-----ALDLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T LVRP 
Sbjct: 118 VASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E     +  L  K
Sbjct: 178 VALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADK 234

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +F   S+ ADF        ++  +   +    + + V    IG H   N +    I 
Sbjct: 235 QVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPVSLGIIGQHNVANAIAASIIA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +      L    P +G   R           LID+SYNA+  +MKAA+ +L   
Sbjct: 295 LQFGASLAQIQSGLLNLMPVKG---RVDVQQLSDNIKLIDDSYNASVPAMKAAVDLLGSF 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +         
Sbjct: 352 T----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQLCGGKHF 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            ++ E ++ +   + +       V+VK +NS G  ++   L E +
Sbjct: 408 SNHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 454

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 213/471 (45%), Gaps = 29/471 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +   G   G      ++ +S D+R+I     F A+ G  +D H+F   A + GA
Sbjct: 5   TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +      ++ P   V D   AL +LA       +   +AITGS GKTT KEM
Sbjct: 63  GALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  IE +  AK EI++GL+  G   +N D +   L ++    L  K
Sbjct: 178 IALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDTLWQS---VLADK 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLG 301
            + +F  +   ADF         E  +   + +    + +E+    IG H   N +    
Sbjct: 235 KVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A V+     L   +  +G   R           LID+SYNA+  +MKAA+ +L 
Sbjct: 295 IALHMGATVEEIQFGLLNLNKVKG---RVDVEQLSSTIKLIDDSYNASVPAMKAAVDLLG 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + +     
Sbjct: 352 AFR----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL---- 403

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            H  + ET   +  +I+  L     D   ++VK +N    + +   L E F
Sbjct: 404 CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454


>gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
 gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
          Length = 456

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 218/473 (46%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + +++ + ++   S+       +N I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   SLYEVAKVVEAQNSLSEFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V D L A   LA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKEIPGK------PYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +P
Sbjct: 117 MIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HIAV+T I  AHL  F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIAVVTLIGEAHLEFFGSREKIAEGKMQIIDGMDSHGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG ++     ++  ++          +  +++       G + A N ++   
Sbjct: 230 --NQMLIRFGDNQE--IYVKDIQERKNSLTFTTNVLDRAIT--LPLSGKYNASNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L  + D  I+AL      + R +  + A       ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAVEDDDIIEALENIQLTKNRTEWKKAA---NGADILSDVYNANPTAMRLILESFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            ++P  +G++IAVL DM E+G  S   H  +   LS   I H+   G  + +L     + 
Sbjct: 341 SLTPENQGKKIAVLADMKELGPKSVELHQQIITALSPDKIDHLVFYGNDIESLAQLASQM 400

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                V++       +  D +   ++  L   D +++K SNS    +L+  L+
Sbjct: 401 YPIGKVYFFKKTEDQDQFDAMANHVKEILEANDYLLLKGSNSMHLDQLVEQLV 453


>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 212/464 (45%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KE 
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEX 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G    N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIXNADNNDWLNWQS---VIGSR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSX 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  S  AA+ VL++  
Sbjct: 295 SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSXTAAVQVLAEXP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GD  E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 352 ----GYRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 405 EHFADKTALITRLKLLIAEQQVITILVKGSRSAAXEEVVRALQE 448


>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
 gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
          Length = 449

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 240/460 (52%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L   +    I I      N +  +S+ +     F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAVLG---ITISNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVLLQHDFLVFASRGNFNNKLGMFINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKKLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 454

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 216/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + +++ + ++    I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   SLYEVAKVVEAQNIISEFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFESG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKEISGH------PYLLVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 117 MIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIHLLSEIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HIAV+T I  AHL  F   E+IA  K +I +G+   G +    D   D +          
Sbjct: 177 HIAVVTLIGEAHLEFFGSREKIAQGKMQITDGMNSHGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG+++     ++  ++          +  +++       G + A N ++   
Sbjct: 230 --NQMVIRFGENQE--IFVKSIEESKNSLSFTTNVLNQALT--LPLSGKYNATNAMLAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+A       +    R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVADEDIIEA---LEHVQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFT 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           QI+P+ +G++IA+L DM E+G  S   H  L E L+  +I+H+   G  + AL     + 
Sbjct: 341 QIAPNQDGQKIALLADMKELGPSSVDLHCQLIEALNPDDINHLIFYGKDIEALAQLASQL 400

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                V +       +  + L   +Q  L   D ++VK S+S     ++N LL
Sbjct: 401 YPIGKVFFFRKTDTEDQFEDLCHHVQEILGANDQILVKGSHSMNLEEVVNRLL 453


>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 461

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 139/479 (29%), Positives = 215/479 (44%), Gaps = 31/479 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L + +    +G      V  IS D+R +     FFA+KG ++D H ++  A
Sbjct: 1   MLKLNT-QKLAEILNAKLVG-NGLVEVENISTDTRKMVVNSLFFALKGENFDAHHYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV          L +P   V+D   AL +LA   R      ++A+TGS GKT
Sbjct: 59  VAQGAVALVVQKINSH----LDVPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+  +  F + ELG +H GEI 
Sbjct: 115 TVKEMTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +A AHL  F  IE +A AK EI+ GL  +G   +N + ++     
Sbjct: 175 YTTSLAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRGLPASGVAIINKEHNYSIKWA 234

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +   +G + I  F  +   ADF     +     S  E+      + +    +G H  +N
Sbjct: 235 QE---IGERAIQYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A +    K L +    +GR    +   N     L+D++YNAN  S+++
Sbjct: 292 ALAATALAMNVGASLTQVKKGLEMRSQVKGRLFPIQPCEN---LLLLDDTYNANVDSLQS 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL + S      RI ++GDM E+GE SQ  H  +A+     ++  V   G     + 
Sbjct: 349 AISVLQKYSAF----RILIVGDMAELGENSQLCHQQVADYAKSADLDLVLSFGTESAVIS 404

Query: 416 DALPRSIHVHYSETMDGLFLFIQ----SSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468
            A        +      L  +++      L +    V++ K S       +IN L E F
Sbjct: 405 QA----NLGQHFTDKATLCAYVKPLIEQKLKENQKVVILAKGSRRMKMEDVINSLKETF 459


>gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
 gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
          Length = 452

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 214/466 (45%), Gaps = 26/466 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++   +     + +     +N I  DSR I   + F  ++G   DGH+FI  A   G
Sbjct: 4   TLQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ +       P   V D L A   LA     + +  +IA+TGS GKTTTK+
Sbjct: 63  AVATFSEKNITSD-----YPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L++L  P
Sbjct: 118 MIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTHP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL  F   E+IA  K +I +G++  G +    D      L  K      
Sbjct: 178 HIAVVTLIGEAHLEFFGSREKIAEGKMQITQGMDGHGILIAPADKIINSFLPEK------ 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  +  D  + + ++       +       ++      G + A N ++   +  
Sbjct: 232 QKVIRFGADE--DIFVTELEEHKNYLNFKTNFLDNEIK--LPVTGKYNATNAMIASYVGK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  I AL+  +    R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 LLNVSEEKIISALAQLNLTRNRTEWKKAA---NGADILSDVYNANPTAMKLILETFSSIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  G++IAVL DM E+G+   + H  +   L    I  ++L G  + AL D + +   V
Sbjct: 345 ANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYSV 404

Query: 425 ---HYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +Y    + +D L   IQ  L   D +++K SNS    +++  L
Sbjct: 405 GKWYYFAQADQVDELTEQIQKVLGPNDQILLKGSNSMKLAQVVECL 450


>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 214/473 (45%), Gaps = 19/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +++  D++    G  +     G   G+S DSR+    E F  ++G  +DGHDFI  A
Sbjct: 1   MSAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +++G   +V                + +  V + L AL  LA   R R    +IAITGS 
Sbjct: 61  IKRGVRALVAAEAWWQRQNHQFPKDLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSC 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+ + L+S  +      + NN IG+P TL  +    +  + E+GM+H GEIR 
Sbjct: 121 GKTTTKEMIALVLASRFRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMNHFGEIRR 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP IAV+T +  AHL     +E +A AKAE+ +GL   G I  N DD   + L+A
Sbjct: 181 LAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADD---QRLRA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             H    +T  SFG    A  Q     QC       E++ QGK   +     G H   N 
Sbjct: 238 ALHHFKGQT-LSFGFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   L    +   +AL  F    G   R +   +     + ++ YNANP SM  A
Sbjct: 297 LAAAAVGLALGLPAEQISQALGRF---AGLKHRSQMQCHTSGIHIFNDCYNANPGSMAMA 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           +  L+ +    +GR +A LGDM E+G  +   H  L  + +   +  + + G        
Sbjct: 354 LQTLASLK--NQGRAVAALGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSVRQ 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            AL   +P S  ++   +       I+     GD ++VK S      +L+  L
Sbjct: 412 GALAAGMPHS-RIYLVASHAEGADIIRGFCRPGDTLLVKGSRGATMEKLLACL 463


>gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
          Length = 450

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 157/461 (34%), Positives = 250/461 (54%), Gaps = 18/461 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +W    L  A+      ++ Q  +   I  +S+ I   + F A++G   DGHD+I  A+ 
Sbjct: 2   IWNSKTLSDALG----LLISQSIITNEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAIN 56

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  V+V+  +  +  +    +  VDD L AL +LA+  R  S A  IAITGSVGKT+T
Sbjct: 57  QGASAVIVSKQVDIADKN---KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTST 113

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L     T+A  G++NNH+G+ + LA MP D +F IFELGM+H GEIR L  ++
Sbjct: 114 KEALKTLLQHEALTFASRGNFNNHLGLLINLASMPDDTEFAIFELGMNHKGEIRELVQIL 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P+IA+IT I+ AHL  F+ +E+IA AK EIFE  +K G   +N D + ++ + +    L
Sbjct: 174 KPNIAMITNISEAHLEFFNSLEDIAEAKCEIFESFDKDGIAVINSDSNCYDRILSILKKL 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I+ I++FGKS +A+  L  ++   EQ  ++ ++    +E     I  H A+N    L I
Sbjct: 234 SIENIHNFGKSSSAELIL--YEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLI 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +L  D++ A   L      +GRGK     +N G   +I + YNA+P SMKAA+  L Q
Sbjct: 292 IFLLNQDLNKAAGYLKNIPMTKGRGK----IINIGNSRIICDYYNASPTSMKAALEYLKQ 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +       + A++G+M E+G+ S+  H +L   +     S V+L G +   + DALP  I
Sbjct: 348 MPATN---KTAIIGEMLELGQNSERLHKELVPYILDSGCSKVFLVGANTKYIYDALPEKI 404

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              Y + +D L         + +++++K S      ++I+ 
Sbjct: 405 TKAYFKNIDELIASTNDLFKNDELILIKGSRGIKLDKIIDY 445


>gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
 gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
          Length = 477

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 180/477 (37%), Positives = 251/477 (52%), Gaps = 17/477 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G    +      +G+SID+RSIAP + F A+K    DGHDF+  A++K
Sbjct: 2   LWTAAEAAAATGGR---VASDWVASGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+        S  +    VDDV   L  L  AAR R    ++A+TGSVGKT+TK
Sbjct: 58  GAAAALVSRIPEGVDNSEKL--LLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS     +A   SYNNH GVPLTLARMP D DF + E+GM+H GEI  L  + R
Sbjct: 116 EMLRTVLSEQGTVHAAEKSYNNHWGVPLTLARMPKDADFAVIEIGMNHPGEIAPLARMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +APAHL+ F  +E IA  KA IFEGLE  G    N D +   +L+ K+    
Sbjct: 176 PHVAMVTIVAPAHLAAFENLEGIAREKASIFEGLEPDGIAIYNGDLAVSGILRDKAAETA 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K+I SFG++     +L   +     +    +     +       G H A N +  + ++
Sbjct: 236 RKSI-SFGETAGTHHRLTSVQVMDACTVATGRAWRVPLLFKVMVPGRHFAMNAMGVMAVI 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANPASMKAAISV 359
           S L  D   A+ AL+ ++P  GRG R +  L+         LID++YN+NPAS+ AA+ V
Sbjct: 295 SALRLDRALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASLGAALEV 354

Query: 360 LSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+    H       +GRRIA LGDM E+G    + H  LA    +  I  V   G  + A
Sbjct: 355 LAAAGTHDHVGRRDKGRRIAYLGDMKELGAQEVTLHEALATSPWIEKIDLVHCVGPLMRA 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           L   LPR    H++ET D +   +   L  GDVV+ K S S G  R+++ + +   A
Sbjct: 415 LWMKLPREKRGHWTETADKMAEGVVRDLDAGDVVLAKGSLSMGLGRVVDAIRKMRQA 471


>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 459

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 215/470 (45%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +A+     I    +  V+G++ DSR +   + F  ++G   DGH+F+  A Q 
Sbjct: 3   MNIAEIARAVDAQNDIEQWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A++GS GKTTTK
Sbjct: 62  GASATLWAADRSYE--DDGYPRIVVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GMSH GE+  L+ LV 
Sbjct: 120 DMIASILSTQMNVTKTYANFNNAIGVPVTLLNMESNTEAVVVEMGMSHFGELDELSKLVT 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   + IA AK EI  GL + GT   N D+      +AK    G
Sbjct: 180 PDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGLREDGTFVYNGDEPLLRE-RAKDLKQG 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   +FG+  + D      +Q       +V L     E     IG +   N +  + + 
Sbjct: 239 QK---TFGRQLDNDIYATSVEQSDHDLRFKVNL-WPDEEFTIPMIGEYNVNNAMAAMMVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L          L+     E R +       Q    ++ + YN+NP ++K  +  L+++
Sbjct: 295 HLLHVTPSHLKIGLANVELTENRAEWL---TGQQGEKILSDVYNSNPTAVKEVLETLNEL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDAL 418
                GRR+ VLGDM E+G+ S   H  LA  +   +   V+L G  + A     L D  
Sbjct: 352 PE--TGRRLIVLGDMLELGDASAKLHAGLATEIDHQHFQKVFLVGNEMTALKDQLLADGY 409

Query: 419 PRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +   HY+    D L   +Q ++   D+V++K S+      ++N L  +
Sbjct: 410 PAADLKHYASDDQDQLIDDLQKTIQADDIVLLKGSHGIHLENVLNALKAK 459


>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 473

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 136/478 (28%), Positives = 219/478 (45%), Gaps = 31/478 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGI-----SIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + +DL +   G   G   +   NG+     +IDSR I+  E FFA+KG H DGH F+  A
Sbjct: 5   SLNDLEEI--GTLFG-QKERVANGVHHPVAAIDSRKISGGEIFFALKGEHTDGHAFVQTA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLS--------IPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            + GA L VV+T+   +                  V D L AL KLA   R +    I+ 
Sbjct: 62  FENGAALAVVSTEWFENTRQAQPNAHFFTENLFLSVQDPLVALQKLANRYRKKFPIPIVT 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I GS GKTTTKEM    L +  +  A  G++NNHIGVPLTL R+  D +  + E+G++H 
Sbjct: 122 IAGSNGKTTTKEMTAAVLGTTFRVVATEGNFNNHIGVPLTLFRLRDDTEIAVVEMGINHH 181

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSF 231
           GE+  L  +  P   +IT I   H       EEIA A+ E++  L +  G+ F+N DD  
Sbjct: 182 GEMNELCQIAEPTHGLITNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVNADDGL 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287
                 + +   +     +G  +     +   ++ +   +  +  ++    +++ +    
Sbjct: 242 ASQTAGELNLQTL-----YGIEQPNLGLNIWAKEVQLNQQGCASFKICTPKQALTLNLQI 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L    I     A +++   AL  F PK G  +  R        T++++SYN
Sbjct: 297 SGRHNVYNALAAAAIGLNFGAKLESVKLALEHFVPKSGSKRMERI--CAAGLTILNDSYN 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM++A+  L+ +    +G++I +LGDM E+G +S++ H  L E +    I   +  
Sbjct: 355 ANPESMRSALGTLASL--ICDGKKIVLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGF 412

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           G  +       P     H+  T   +   ++     GD ++ K S       ++  LL
Sbjct: 413 GNAMKWTCQEAPNKCKGHF-NTKSEMVQALKEVAAPGDALLFKGSRGMKMEEVLEALL 469


>gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 448

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 217/463 (46%), Gaps = 21/463 (4%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +T  ++ Q   G  + G  P+  ++G+  D+R+      F A++GP +DGHDF+  A + 
Sbjct: 4   YTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAARKA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V             P   V D L AL  LA A R     ++ A+TGS GKTT K
Sbjct: 64  GAAAVLVQRPSPG-------PGVLVADPLAALQVLAAAWRRELGTSLAAVTGSCGKTTVK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L       A  G+ NNHIGVPLTLA +  +    + E+GM+H GEI  LT + R
Sbjct: 117 EILAAMLRQSGPCLATRGNLNNHIGVPLTLAELGPEHRHAVVEMGMNHAGEIAVLTRMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I    PAH+ N   I  IA+AK EI EGL   G   +N DD + +    ++    
Sbjct: 177 PDLALINNAGPAHIENLGSIAAIAAAKGEILEGLSAHGIAVINGDDEYADYWAERAPG-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++ F           +W+   +   ++++    ++ +     G H   N+L      
Sbjct: 235 --EVWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVSLRIPLSGRHNGANVLAATTAA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D   +A+    P  G   R +    +G   ++D++YNANPAS++AA+ VL++ 
Sbjct: 293 LALNLGLDQIARAVEALTPAPG---RLQWREGKGGSRILDDTYNANPASVEAALRVLAEQ 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRR  VLGDM E+G  ++  H  +        I  V+  G        A   +  
Sbjct: 350 P----GRRYLVLGDMAELGADAELHHQQMGGHARALGIDGVFTLGSLSRTTSRAFGPAG- 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            H+ E  + L   + S L    VV+VK S +    R++  L E
Sbjct: 405 THFVE-REALVDAVLSMLAPDAVVLVKGSRAAHMERVVAALTE 446


>gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 457

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 203/445 (45%), Gaps = 15/445 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  D+R I P + F    G   DGH+F+  A + GA       ++         
Sbjct: 23  DVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNPPTDF-- 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA+      +  +IAITGS GKTTTK+++   + +  K +   G++
Sbjct: 81  PVILVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNF 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      
Sbjct: 141 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 200

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +EIA AK EI  GL  +G +   Y+++        S   G     +FGKS  ++    + 
Sbjct: 201 QEIAKAKLEITAGLNPSGILIYPYEETLL-----LSQIDGDFRQLTFGKSTESEIYPLEI 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              +E +      +   +E+    IG H   N +  +     +  +      AL      
Sbjct: 256 HAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNMERS 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R      +    +++++YN++P +++  +     +   G+  +  VL DM E+GE
Sbjct: 315 KS---RLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMDSKGKP-KYLVLADMLELGE 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A        I    V + +T + L   +   
Sbjct: 371 LSVLLHQESAEVLEEGTIEKVFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKE 430

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 431 ITGNEWILVKGSYGMGLKDVVENLI 455


>gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
 gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
          Length = 463

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 215/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G+   G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  D      ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGNQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I   +        G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVTDEDII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     + 
Sbjct: 341 NIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQV 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 401 YPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
 gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
          Length = 497

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 137/499 (27%), Positives = 217/499 (43%), Gaps = 50/499 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +    +LL  +Q   I              +  +  DSR + P   F A+ G   DGH F
Sbjct: 1   MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRF 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL--------------------SIP-----VFGVDDV 91
           +   V +GA   +V+ + + ++ S                     ++P     +  VDD 
Sbjct: 61  LADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDP 120

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L AL ++AV  R     T+I ITGSVGKT+TKE++    S   +T     S+N+ + +P 
Sbjct: 121 LFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPA 180

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL  +  D    + E+GM   GEIRFL  L RP I ++T + P+HL     IE IA+AKA
Sbjct: 181 TLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA 240

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QS 270
           E+ E L   G   LN DD     + +++ A     + ++G + NAD +L           
Sbjct: 241 ELPESLPADGWCILNADDHRVAAMASRTAA----RVLTYGYAPNADVRLLDVVSHGLYGI 296

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + V  +G+S  +    IG H A   L  +    +L  D D   + L     + G   R 
Sbjct: 297 ELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGL----REPGEQLRL 352

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R    Q   T+ID++YNA P S  AA+ VL++     +GRRIAVLG+M E+G  S   H 
Sbjct: 353 RIVPGQHGTTIIDDTYNAAPLSTIAALQVLAET----KGRRIAVLGEMLELGAASVEGHQ 408

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDV 446
            +    +      +   G     + +A       +  +   +  +     +   +  GD 
Sbjct: 409 QVGAAAATM-ADVLVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDH 467

Query: 447 VVVKSSNSCGFYRLINLLL 465
           +++K S       ++  L 
Sbjct: 468 LLIKGSRGVQMETIVAALQ 486


>gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
 gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
          Length = 474

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 199/473 (42%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL    ++  A+ G  +   P   V G +  DSR + P   F A  G   DGHD+   
Sbjct: 1   MIPL-RLAEVAAAVGGRLVAADPTAAVTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A++ GA  V+    + A      +P+  VDD   AL +LA A   R    T+I +TGS G
Sbjct: 60  AIRAGAVAVLGTRPVPA------VPMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++    S +  T A  GS+NN +G P T  +   D  + + E G   +G IR+L
Sbjct: 114 KTSTKDLIAALTSRLGPTVAPPGSFNNELGHPYTALQAGPDTRYLVLEKGARGVGHIRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AH+  F   E IA AK E+   L   G   LN DD     +  +
Sbjct: 174 CDVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVLNADDGLVAAMATR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++  AD +               +        V     G H   N L
Sbjct: 234 TQA----RVIRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      L          +R          T+ID+SYNANPASM+ A+
Sbjct: 290 AAAAVARELGMPLTELAIVLGEMGLVS--TRRMDVFERIDSVTVIDDSYNANPASMEVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I      R +AVLG M E+G      H+++  + +   +  + + G     + + 
Sbjct: 348 RALASI--GQRRRTVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVVGEAAAPIHEG 405

Query: 418 L-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      V  ++  D     ++  L  GDVV+VK S     + + + L 
Sbjct: 406 ATSVRDWGGESVQLTDQADA-VEVLRGDLRPGDVVLVKGSR-YRTWEVADALR 456


>gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 463

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 215/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++  +      P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGT------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G+   G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  D      ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGNQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I   +        G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVTDEDII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     + 
Sbjct: 341 NIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQV 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  VHY       +  + +  ++Q+ L   D +++K S+S    +L+  L+
Sbjct: 401 YPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVERLV 453


>gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 456

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 222/466 (47%), Gaps = 17/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  G
Sbjct: 3   MQLAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+
Sbjct: 62  AVATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P
Sbjct: 121 MTAAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+    LL  K+  +  
Sbjct: 181 DVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG   N D +       + ++  +V      ++   + IG +   N L  L + +
Sbjct: 237 QEVLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGN 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I    VD   KAL+ F     R +       +    ++ + YN+NP ++K  +    Q+ 
Sbjct: 296 IYHIPVDKMQKALASFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVP 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
               G+RI VLGDM E+GE +   H +LA+ ++   I  V+L G  +  L + L      
Sbjct: 353 TE--GKRIIVLGDMLELGEKAAEMHNNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDE 410

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             IH +  + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 411 TQIHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI 456


>gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
 gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
          Length = 453

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 138/465 (29%), Positives = 203/465 (43%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   AV  GA
Sbjct: 5   SLSHLAQLTQGQLIGD--DATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V          L +    V D   AL +L      R +   +AITGS GKTT KEM
Sbjct: 63  VALLVER-----ALDLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T LVRP 
Sbjct: 118 VASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E     +  L  K
Sbjct: 178 VALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADK 234

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +F   S+ ADF        ++  +   +    + + +    IG H   N +    I 
Sbjct: 235 QVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANAIAASIIA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +      L    P +G   R           LID+SYNA+  +MKAA+ +L   
Sbjct: 295 LQFGASLAQIQSGLLNLMPVKG---RVDVQQLSDNIKLIDDSYNASVPAMKAAVDLLGSF 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +         
Sbjct: 352 T----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQLCGGKHF 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + E ++ +   + +       V+VK +NS G  ++   L E +
Sbjct: 408 SDHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
 gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 217/466 (46%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VADVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARA- 233

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G   + SF +S   ADF      + +       +   G+++ V  + +G H   N L 
Sbjct: 234 --GAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   +      L+   P +G   R    +      +ID+SYNANP SM AAI 
Sbjct: 292 AAAAAHAVGLSLSGIAAGLAAVQPVKG---RTVAQIAPNGVRVIDDSYNANPTSMCAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 --GANGRHFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 462

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 210/466 (45%), Gaps = 17/466 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +++ +    I     +  + G+ IDSR +     +  I G + +GH ++  A+  G
Sbjct: 8   SIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNG 67

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+             I V  VDD   AL +LA A R +    ++ +TGS GKT+TK+
Sbjct: 68  ARAVLWERREANPPKE--IVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKD 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L+    T   +G+YNN IGVPLTL  +  + +  + E+GM +L E+ FLT +VRP
Sbjct: 126 ILASVLAKHFITQKTLGNYNNEIGVPLTLLSLSENCEAAVVEMGMENLQELSFLTQIVRP 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+I+ +  AHL N   +E IA AK EI EGL + G +  N D         +    G 
Sbjct: 186 DIAIISNVGTAHLENLGTMENIARAKMEITEGLGEHGLLIYNGDQQLLRNAAIEKQIPGC 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I +FGK +  D  + + +Q  +     +    K        IG H A N         
Sbjct: 246 IKIRTFGKDEQNDVVVHQVRQLPDGLCFSI----KDQVYHLDMIGKHQAMNATAAWIAAR 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D +   +  +       R +  R         ++++SY +NP S  AA+  + +  
Sbjct: 302 ALGLDEEEIAQGFASVEKTGLRNELVRV----NQCLILNDSYKSNPQSALAAVDTMEEFD 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
                 ++AVLGDM E+GE S   H  L + +S Y++  V   G     +      ++  
Sbjct: 358 IPY---KLAVLGDMLELGETSDMIHYTLGKDISSYHLQEVLTIGDMACYIAQGARDNMEH 414

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +    + L  +++  +    +++VK S       +++ L++E
Sbjct: 415 TLVRHFTDKEELLNYLRPYMHKECMLLVKGSRGMKLDEVVDELVKE 460


>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 460

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 217/460 (47%), Gaps = 18/460 (3%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              L + + G  +        + G+ IDS+ I     F  I     DGHD++  A+  GA
Sbjct: 12  LKKLEEVVDGEGLQESFHHLEMQGVCIDSKKIKEGNLFVPIIRVK-DGHDYVKEAIDNGA 70

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +             IP+  VDD L AL +LA   R      +I ITGS GKTT K++
Sbjct: 71  VASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKDI 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P 
Sbjct: 129 ISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPD 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I  +HL      EEI+ AK EI +GL++ G +  N D    E L ++ + + + 
Sbjct: 189 VAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGLLLYNGD----ETLLSRKNNVLVL 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG+    D      +        +  L    ++      G H   N ++ + +   
Sbjct: 245 ECKSFGEKDTNDLFPTNVQLDEYGVHFK--LNDSKIQYDVPLHGKHNILNTIVGIAVGQF 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +    A            R++    +  FT+I++++NA+P+SMKAAI  L +++ 
Sbjct: 303 YNVPTEKIQDA---LRQINITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNA 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +   ++I V+GDM E+G+ ++++H ++ ++L+  NIS+V+  G     + +   +   + 
Sbjct: 360 YK--KKIIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYGEMAEIVAEEAMKTYATG 417

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            V        +   +   +   DVV++K S       ++ 
Sbjct: 418 QVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQ 457


>gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
          Length = 476

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 171/473 (36%), Positives = 239/473 (50%), Gaps = 17/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G + G        G+SID+R++   + F A+     DGH+F+  A++K
Sbjct: 3   LWTAAEAARATGGEARG---DWTALGVSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+            P+  V DVL  L  L  AAR R    I+A+TGSVGKT+TK
Sbjct: 59  GAAAALVSRVPENVPAD--APLLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   +   ++ +A   SYNNH GVPLTLARMP D + GI E+GM+H GEI  L  L R
Sbjct: 117 EMLRTVIGGQRRVHAAEASYNNHWGVPLTLARMPRDTEVGIIEIGMNHPGEIAPLARLAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+  AHL  F  I+ IA  KA IF GL   G   +N D     +L+A + A G
Sbjct: 177 PHVAMITTVGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAEATG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +FG++     +L K       +  E ++            G H A N L  L +V
Sbjct: 237 A-HILTFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVV 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359
             L  D   A   LS + P  GRG R R        +  F LID+++NANP SM AA+ V
Sbjct: 296 RALGLDRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAALEV 355

Query: 360 LSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           ++   P      H  GRRIA+LG+M E+G    + H  LA++ +   +  V   G  + A
Sbjct: 356 IAAARPKDNVGRHARGRRIAILGEMLELGPDELALHAGLADLPATAELDVVHCVGKRMRA 415

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L +ALP      ++E    L       +  GDVV+VK S       +++ L +
Sbjct: 416 LYEALPPGNRGRHTEKASDLAAKAARLVDAGDVVLVKGSKGSKVSEVVDALRK 468


>gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 463

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 215/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G+   G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  D      ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGNQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I   +        G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVTDEDII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     + 
Sbjct: 341 NIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQV 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 401 YSAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           zeae Ech1591]
 gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae
           Ech1591]
          Length = 453

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 212/465 (45%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    +G      ++ +S D+R +     F A++G  +D HD+   AV  GA
Sbjct: 5   SLRQLADVLGARLVG--KDLIISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +        +P   VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHLPIE-----VPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP 
Sbjct: 118 TASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +E +A AK EIF GL   G   +N D +     +     L  K
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAIINADSNDEARWQD---VLAGK 234

Query: 246 TIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F   +    DF     +     +   +      + V     G H   N L    + 
Sbjct: 235 TLWRFSPQECDGVDFYAGDIRISERGTDFVLHSPMGDIAVTLPLPGRHNIANALAATALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     L       GR      A  +    L+D+SYNAN  SM AA+ VL+++
Sbjct: 295 LAVGASLEAVKVGLEQLQAVSGRLFPIALAPGK---LLLDDSYNANVGSMTAAVHVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G+ +Q+ H  + E     NI  V   G     + +    S  
Sbjct: 352 P----GYRVMVVGDMAELGQDAQACHRQVGEAACKANIDKVLSVGALSALIGE---TSGT 404

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
             + +    L   +++ +   +   V++K S S    ++++ L E
Sbjct: 405 GEHFDNKTALIDRLRALVTQHNTITVLIKGSRSAAMEQVVHALQE 449


>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
 gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
          Length = 455

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 217/466 (46%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A+ G  IG        G+SIDSRS+   + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALSGRQIGA--DATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VADVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G E+I  AK EI EGL + G   LN DD  F +  A++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARA- 233

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G   + SF +S   ADF      + +      ++   G++++V  + +G H   N L 
Sbjct: 234 --GSHKVVSFARSNPKADFHATDIGRDARGCPSFKLHGAGETVDVQLNVLGEHNVSNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   ++     L+   P +G   R    +      +ID+SYNANP+SM AAI 
Sbjct: 292 AAAAAHAVGLSLNGIAAGLAAVQPVKG---RTVAQIAPNGVRVIDDSYNANPSSMCAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 --GANGRHFATQAELIDAVSAEHASDTTILIKGSRSAAMENVVAAL 447


>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
          Length = 449

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 239/460 (51%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L   +    I I      N +  +S+ +     F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAVLG---ITISNSINCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+I +IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNITMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSAKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
 gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
          Length = 453

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 213/463 (46%), Gaps = 17/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL + +    + I     + GI+IDSR +   + F    G + DGH++I  A +KGA 
Sbjct: 5   VKDLEKILNAKKVNITSDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEKGAA 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   S  +    +  V+D   A+  LA        A  IAITGS GKTTTK+++
Sbjct: 65  ASLSLKDDFVSSNN----IIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKTTTKDII 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  LS+  K +   G++NN +GVPLT+   P D +  + E+G    G++ FL+ LV P+ 
Sbjct: 121 TSVLSTKYKVHKTQGNFNNELGVPLTILAAPEDSEILVLEMGADGFGQLDFLSKLVEPNY 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  +H+  F   E IA AK EI  G++K G    N D+   + L   S       
Sbjct: 181 TVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGDEVLLKSLVDSS----DFN 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S G++   D  L  +    ++   ++ +  +         G H   N++    I S +
Sbjct: 237 TTSCGENNYNDIILENYTITRDRIDFKLNISDEQYFTKLK--GKHNLFNIMFATAIASKI 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +   KA+   +  E  G R +    +    +I+++YNA+P SMKA + V+S     
Sbjct: 295 GLTNEEIRKAIE--NTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVVSSFDDF 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLAL-KDALPRSIH 423
               +  VLG M E+G    ++H ++ E +S    +I+ V   G     + K      I 
Sbjct: 353 DF--KTLVLGSMFELGPNEVNYHAEVGEYISNKTNDINLVISVGELAENITKQIKNDKIK 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  T   +  +++++    +V+++K+S S     +I  + +
Sbjct: 411 TLHFPTTAEVSEYLKNNKHKNEVILLKASRSMKLETIIEEITK 453


>gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. HTCC2601]
          Length = 477

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 175/472 (37%), Positives = 252/472 (53%), Gaps = 18/472 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D   A  G   G       NG+SID+R+IA  + F A+K    DGHDF+  A++ 
Sbjct: 3   LWTAKDAAAATGGQVAG---DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQALEN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+       G     +  VDDV   L  L  AAR R++A ++A+TGSVGKT+TK
Sbjct: 59  GASAALVSR---IPEGVDPANLLIVDDVQAGLEALGRAARARTRARVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML + L +  + +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ + R
Sbjct: 116 DMLRVVLGAQSRVHAAEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSDMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +APAHL+ F  +E IA  KA IFEGLE  GT  +N D     LL A   A  
Sbjct: 176 PDVAMITIVAPAHLAAFESLEGIAREKAAIFEGLEPGGTAVVNGDLPVSPLLVAAGEARA 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG+++    ++         + ++ +     +       G H A N +  L + 
Sbjct: 236 A-HVITFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVPGRHFAVNGMGVLAVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             L  D   A+ AL  +    GRG+R    L+         LID++YNANPAS+ A++ V
Sbjct: 295 HALGLDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANPASLAASLEV 354

Query: 360 LSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+             GRRIA LGDM E+G    + H  +A++ ++  I  V   G  +  
Sbjct: 355 LAGAKTRDGVGRVSHGRRIAYLGDMKELGATEAALHRAVADLPAMERIDLVHCVGPLMRT 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L  ALP+    H++ET DG+   ++  +  GDVV+VK S S G  R+++ + 
Sbjct: 415 LWQALPQHKRGHWTETADGMAARVRHDMDAGDVVLVKGSLSTGLGRVVDAIR 466


>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
 gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 468

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 207/474 (43%), Gaps = 19/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  +++ A  G  +   P   V  +  DSR +     F  +KG   D H F+  A
Sbjct: 1   MTMEMTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   +                  VD    AL  +A A R R    ++ ITGS GKT
Sbjct: 61  FASGAAAALTQEHTRMEAEEAW---IAVDSTQLALQHIAAAYRQRFSIPVVGITGSAGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM  +ALS+  K     G++N+ IG+PL + +   + +  + E+G+S  GE+  L  
Sbjct: 118 TTKEMTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLAQ 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P  AV+T +   H+      E I   K  I +   +   +FLN DD     L+ K+ 
Sbjct: 178 VAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT- 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMT 299
             G + ++ +G +   DF+        E +       G +S+EV+   +G H   + L  
Sbjct: 237 --GYEAVF-YGTAPWCDFRAEGITVQGETTAFRCLAPGRESVEVILPVLGMHHVLDALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L +   L   +D A  AL  + P   R + Y          +ID+SYN++P + K+++SV
Sbjct: 294 LAVAERLGVPLDRAAAALGDYRPLAMRQQIYHV----NEVAVIDDSYNSSPGAAKSSLSV 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
           L+       GRR+AVL DM E+GE S+  H ++    +   +  +   G    A+ +   
Sbjct: 350 LAGFRA---GRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVGPEAKAVAEGAR 406

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                I     +        ++S L  GD V+VK S       ++  LL+ FPA
Sbjct: 407 SVRSGIDCRVFDHNRQAAAELKSFLSPGDAVLVKGSRGMHTDEIVRALLQ-FPA 459


>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
 gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
          Length = 449

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 241/460 (52%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L   +    I I      N +  +S+ +     F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAVLG---ITISNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKKLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V+   I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVMIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           tropica CNB-440]
 gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinispora tropica CNB-440]
          Length = 471

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 200/475 (42%), Gaps = 26/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL +  ++  A+ G  +   P   V G +  DSR + P   F A  G   DGHD+   
Sbjct: 1   MIPL-SLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A++ GA  V+    +        +P+  VDD   AL +LA A   R    T++ +TGS G
Sbjct: 60  AIRAGAVAVLGTRVVAG------VPMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++    + +  T A  GS+NN +G P T  +   +  + + E G   +G + +L
Sbjct: 114 KTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPETRYLVLEKGARGVGHVSYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AH+  F   E IA AK E+   L   G   LN DD     +  +
Sbjct: 174 CEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPAEGLAVLNADDDLVAAMATR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++  AD +               +        V     G H   N L
Sbjct: 234 TRA----RVVRYGEAAEADVRAVDVVLDERGRPSFTLVTPEGRAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V     AL          +R          T+ID+SYNANPASM AA+
Sbjct: 290 AAAAVARELGMPVTELATALGELGLVS--SRRMDVFERVDGVTVIDDSYNANPASMAAAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+        R IAVLG M E+G   Q  H+++  + +   +  + + G     + + 
Sbjct: 348 RALAGFR---RRRTIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVVGEAAAPIHEG 404

Query: 418 L-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                      V  ++   G    ++  L  GDVV+VK S     + + + L  +
Sbjct: 405 ATSVRDWEGESVQLTDQ-AGAVEVLRGDLRPGDVVLVKGSR-YRTWEVADALRAD 457


>gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
 gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
          Length = 457

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 221/471 (46%), Gaps = 27/471 (5%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVQRKL-----DLNITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R     D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +  K     L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWKD---VLA 236

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            K + +F +S + AD+     +   +  +  ++Q    +++V    IG H   N L    
Sbjct: 237 DKNVLTFSESDDTADYFATNIRINEQGEACFDMQTPQGAIDVELGIIGQHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     A +      L+     +GR +  + + N     LID+SYNA+  +MKAA  +LS
Sbjct: 297 LSIQFGATLAEIKSGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +     
Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV---- 405

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  +  T + +   I+  L         ++VK +NS G  ++   L E F
Sbjct: 406 CNGTHFATHEAMIAHIEQHLSLPENAPHTLLVKGANSAGMSKIAAALKENF 456


>gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 455

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 208/465 (44%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +    +       V+GISID+R+I   + F   +G   +GH F+  A +KGA
Sbjct: 4   TLKQLAAWLN-EDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +   D         IP+  VDD   AL ++A A R   KA  I ITGS GKT+TK++
Sbjct: 63  GASLWQKDEPNPPEG--IPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTSTKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   K    IG++NN +G+P+T+ ++  D +  + E+GMS  GEI FLT L +PH
Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I  AH+ +      IA AK EI +G++  G +F + D+   + L AK   L   
Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQPDGLLFYDGDEPLLQELVAKEMHLNA- 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +FG   N           +  S       ++G   +     +G H  +N L+ + I 
Sbjct: 240 --VAFGLEPNNLLYADHIHANANGSSFTTHGMIEG---DFFISVLGKHQVKNTLVAMLIS 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    +            R +          I+++YNA P S+KAAI  ++  
Sbjct: 295 HQLGLKNEQIRTS---LEHVVLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATS 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +   E  +  VLGDM E+G   Q FH  LAE +    I +V L G  +  L + L     
Sbjct: 352 TIRPE--KWLVLGDMLELGPDEQRFHEGLAEEIDEQEIDYVCLFGPRMTHLYEVLKERFG 409

Query: 424 V----HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  +    +   ++    +  +V++K S       ++   
Sbjct: 410 AERLLYAEDDYTAIIEKLK-LANESSIVLLKGSRGMKLETILQAF 453


>gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Shewanella amazonensis SB2B]
 gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella amazonensis SB2B]
          Length = 455

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 27/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L  A  G   G      V+ +  DSR +     F A+KG  +DGH+F   A
Sbjct: 1   MIPL-SLTQLAAATHGRLCG--EDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++V  ++      L++P   V D   A+ ++    R       +A+TGS GKT
Sbjct: 58  AAAGASALLVERELP-----LALPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS         G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMVATVLSQHHSVLFTAGNFNNEIGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP ++++  +  AHL  F     +A AK+EI+  L + G   +N DD + E +  K  
Sbjct: 173 LVRPSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNK-- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L  K + +FG    A+   R+    +   +   +   G  + V     G H   N L T
Sbjct: 231 -LKGKRVLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALAT 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I   L   +      L+   P +GR    +     G   L+D+SYNANP S+ AAI  
Sbjct: 290 AAICIALGLPLQEIAAGLAKLAPVKGRMMPRQL----GRLLLVDDSYNANPNSVGAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +IS +    R  VLGD+ E+G+ +   H +L +      +  ++  G        A  
Sbjct: 346 LKEISTN----RTLVLGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
                 + E +D L   + + +   +GDV ++VK S S    R++  L
Sbjct: 402 SK----HFEELDALVSELINYINGVEGDVTLLVKGSRSAAMERVVEAL 445


>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
 gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 474

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 213/468 (45%), Gaps = 18/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F D+++A+ G  I          IS DSR +   + F A+KG  ++G++++  A +KG
Sbjct: 15  MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKG 74

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+     +   S    +  V +   AL +LA   R +    II +TGSVGKTTTK
Sbjct: 75  ASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTK 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L    K +   G++NN IG+P  L ++    +  + E+GM+  GEI  +    R
Sbjct: 135 DIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAAR 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT +  AH+ N    + I +AK EI +   K  T+ +N D+     L+ K+  L 
Sbjct: 195 PDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNFTLN 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLG 301
                  G  +N+D          +    +V       E   + +  G +   N L+ + 
Sbjct: 255 -----RVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAIS 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    D   + +        R +  R    +  FT+I++ YNANP SMKAAI VL 
Sbjct: 310 CGRLLNMSYDEIREGVKNIKLTSMRMEIIR----KKEFTIINDCYNANPESMKAAIDVLK 365

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419
           +   +   R+IAVLG M E+GE +   H ++       +I  +   G +    +      
Sbjct: 366 EFKSN---RKIAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEYKKDFERGFKST 422

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +  +    +  + L  FI   +  GD ++VK+S       +I  L +
Sbjct: 423 NKKGNFMGFDKYEDLKDFILKYIERGDTILVKASRFMKLEIIIEPLKK 470


>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
 gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
          Length = 449

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 240/460 (52%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L   +    I I      N +  +S+ +     F A++G   DGHD++L A+ K
Sbjct: 2   IWNSKTLSAVLG---ITISNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  +++
Sbjct: 115 EALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +    L 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L I+
Sbjct: 235 ITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+GE S+  H  L + +     S V+L G +   + D LP  I 
Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPAKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       +++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2
           ,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 473

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 213/478 (44%), Gaps = 27/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G S  I  P   V G + IDSR +AP   F A  G   DGHD+  
Sbjct: 1   MITL-SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   V+DV+GAL  LA A   R   T++ +TGS G
Sbjct: 60  -------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+P+T      + +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAETEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + ++
Sbjct: 173 ADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++  AD +  K +  ++     E+       +V     G H   N L
Sbjct: 233 TRA----RVLLFGEAPEADVRGEKVRMTADGRPAFELHTPTGCSDVTMRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V    +ALS          R          T+++++YNANP SM+AA+
Sbjct: 289 AAAAVAHELGMSVTEIAEALSEAGTLSRW--RMEVTERGDGVTIVNDAYNANPESMRAAL 346

Query: 358 SVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L+   Q      GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 407 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232]
 gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes
           MGAS8232]
 gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 463

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 215/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELSGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G+   G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  D      ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGNQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I   +        G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVTDEDII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     + 
Sbjct: 341 NIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQV 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 401 YPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
 gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
          Length = 470

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 206/469 (43%), Gaps = 21/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + + HD  +A+  H      +G  + +  D+R++AP + F A++G  +DGHDF+  A + 
Sbjct: 1   MMSLHDATRALACHGARATGEGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+    A      +P+  VDD   AL  LA A R R    +I +TGS GKTT K
Sbjct: 61  GAAAAMVDAAWSAGKADAGLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVK 120

Query: 124 EMLTIALS--------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           EM    L           +   A  G+ NN IG+PLTL  +       + E+GM+H GEI
Sbjct: 121 EMCAAILRVQASRDGFGEESVLATRGNLNNDIGMPLTLLELRDFHRAAVIEMGMNHPGEI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L+ L +P +A++     AHL     ++E+A  K  I+EGL   G   +N DD      
Sbjct: 181 GYLSALAQPTVALVNNAQRAHLQGMGSVDEVAREKGAIYEGLGGAGVAVINADDPHAGYW 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           ++ +     + I +FG    AD   R        S +E+ +    ++      G H  +N
Sbjct: 241 RSLNAG---RPIVTFGIDHPADVSAR-CTLRGLGSRLELDIPQGKIDFALQVPGLHNVRN 296

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L            ++   + L+ F    GR +R           ++D+SYNANP S++ 
Sbjct: 297 ALGAAAACLAAGVPLEAVAEGLAGFAGTRGRLQRR---SGPRGALILDDSYNANPDSVRV 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I VL+ +     G    VLGDM E+GE S   H ++        I  ++  G       
Sbjct: 354 GIDVLAAMP----GHTWLVLGDMGEVGETSAQVHDEVGGYAKSKGIDGLFALGEMSAVAA 409

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     +  +++ L   +   L    VV+VK S      R+ + L
Sbjct: 410 HNFGEGAR--HFTSVEALVKALVPRLDADSVVLVKGSRFMRMERVADAL 456


>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 149/466 (31%), Positives = 216/466 (46%), Gaps = 22/466 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T     +  QG  +G    G V+ +  DSR   P + F A+KG  +D HDF+   V +
Sbjct: 1   MMTLSQAARFAQGRLVGA--DGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVAR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +V   D     G+  I     DD   AL +LA   R    A  I +TGS GKTT K
Sbjct: 59  GAAALV--RDGFELAGASLIQAG--DDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVK 114

Query: 124 EMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EML   L +        A  G++NN IG+PLTL ++     + + E+GM+H GE+ +LT 
Sbjct: 115 EMLAAILRAHAGADAVLATAGNFNNDIGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLTG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++     AH  +F   E++A AKAEIFEGL   G   +N DD+   L +A   
Sbjct: 175 LTRPQVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLIDAGVAVVNADDANLPLFRA--- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G     SFG    AD   R     +  S   +      + V     G H  +N L   
Sbjct: 232 AAGSHRQLSFGLGL-ADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +    + LS F   +G   R +   +    T+ID+SYNANP SMKA I VL
Sbjct: 291 AAALALEVPLAAIAEGLSAFAGAKG---RLQIKQSPRGLTVIDDSYNANPDSMKAGIDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R  V+GD+ E+GE + + H ++ E   L  I  ++  G        A   
Sbjct: 348 AGLP----GPRCFVMGDIGELGEAAPALHAEVGEHARLRGIEQLFALGEASRRAVQAFGG 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +      +++D L   + S L  G  V+VK S      R++  L++
Sbjct: 404 AGQG--FDSIDELLECLDSRLASGTAVLVKGSRFMRMERVVEHLMQ 447


>gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 217/466 (46%), Gaps = 23/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + H L   +    IG      +  ++ID+R + P   F A+KG  +DGHDF   AV  GA
Sbjct: 5   SLHFLSTLLNAEYIGRD-SADITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  ++ +      P   V D   AL +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 64  GALLVSKHLLVAA-----PQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T L RP 
Sbjct: 119 VAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPE 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H    K
Sbjct: 179 SALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---K 235

Query: 246 TIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ F    +++ DF     +   + +   +     ++ +     G H   N L    + 
Sbjct: 236 RVWRFAPLGAEDIDFFASDVRITPQVTHFTLHSPFGTVGIELPLPGRHNIANALAAAALA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +    + L+      GR      A  +    L+D+SYNAN  SM AA  VL+++
Sbjct: 296 MSVGASLAAVREGLTQLPAVPGRLFPIELAAGK---LLLDDSYNANVGSMTAAAQVLAEM 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+GE +   H  + E      I  V   G     L DA     H
Sbjct: 353 P----GYRVMVVGDMGELGETAVDCHRQVGEAAQQAGIDKVLSVGTLSQTLSDASGCGEH 408

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
               +  + L   +   L++  V  V++K S S     ++  L E+
Sbjct: 409 ---FQDKNTLAARVSELLLEHPVITVLIKGSRSAAMENVVRALQEK 451


>gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida BIRD-1]
          Length = 455

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 217/466 (46%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VAGVDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARA- 233

Query: 241 ALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G   + SF + +  ADF      + +       +   G+++ V  + +G H   N L 
Sbjct: 234 --GAHKVVSFARGNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   +      L+   P +G   R    +      +ID+SYNANP SM AAI 
Sbjct: 292 AAAAAHAVGLSLSGIAAGLAAVQPVKG---RTVAQIAPNGVRVIDDSYNANPTSMCAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMAHAVKAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 --GANGRHFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 440

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 200/460 (43%), Gaps = 24/460 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +        +    VN I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     ++  +          VDD L A  KLA     ++K  +IA+TGS GKTTTK+
Sbjct: 63  AIISFSEKEVEQAH-------LLVDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +P
Sbjct: 116 MIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AHL +    E IA  K  I  GL   G +    D      +         
Sbjct: 176 ELAVITLIGEAHLEHMGSRENIAKGKMGITAGL--HGELIAPADPIINAFIPDN------ 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I  FG     D  + K  +  E+   E     +S+       G + A N ++   +  
Sbjct: 228 QKIIRFGLPGE-DLFITKLVEHKEKLTFETNFLDESIT--IPVPGKYNATNAMLAAFVGL 284

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     KA       E    R      +    L+ + YNANP +M+  +     I 
Sbjct: 285 HYGLSEAEIKKA---LKEVELTRNRTEWKKAKNGADLLSDVYNANPTAMRLILETFQAIP 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  GR+IAVL DM E+G  +   H ++ + +    I  V+L G  +  L + +     V
Sbjct: 342 KNENGRKIAVLADMLELGPSAAQLHKEILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKAV 400

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y   +D L   + + L   D V+ K SNS     ++  L
Sbjct: 401 SYFTDLDLLTESLSADLKPTDQVLFKGSNSMKLSEVVEKL 440


>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
 gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
          Length = 487

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/499 (28%), Positives = 217/499 (43%), Gaps = 50/499 (10%)

Query: 4   LWTFHDLLQAIQGHS----IGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +    +LL A+Q  +    + I P      +  + +DSR + P   F A+ G   DGH +
Sbjct: 1   MIRLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLS--------------------IP-----VFGVDDV 91
           +   V++GA   +V+   +A++                        +P        VDD 
Sbjct: 61  LPDVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDP 120

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L AL + AV  R     T+I ITGSVGKT+TKE++   +S   +T     S+N+ I +P 
Sbjct: 121 LCALQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITLPA 180

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL  +  D    + E+GM   GEIRFL  L RPHI ++T + P+HL     IE IA+AKA
Sbjct: 181 TLLGLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLERLGSIEAIANAKA 240

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QS 270
           E+ E L   G   LN DD     +  ++ A     + ++G + +AD +  +         
Sbjct: 241 ELPESLPPDGWCILNADDPRVAAMAKRTPA----HVVTYGFAPHADVRAVEVISHGLYGI 296

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + V  QG+   +    IG H A   L  +    ++  D +     L       G   R 
Sbjct: 297 ELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAIAAGLRD----PGERLRL 352

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R    Q   T+ID++YNA P S  AA+ VL++      GRRIAVLG+M E+G  ++  H 
Sbjct: 353 RVVNGQQGVTIIDDTYNAAPLSTIAALEVLAETP----GRRIAVLGEMLELGSATEEGHR 408

Query: 391 DLAEVLSLYNISHVWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +    +      +   G        A + A      V      D     ++S +  GD 
Sbjct: 409 QVGAAAART-ADLLVAVGRQAQTVAAAARAAGMAEAQVIVCADNDAAIDRLRSLIQAGDC 467

Query: 447 VVVKSSNSCGFYRLINLLL 465
           ++VK S       ++  L 
Sbjct: 468 LLVKGSRGVQMETIVTALQ 486


>gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
 gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
          Length = 456

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 221/466 (47%), Gaps = 17/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  G
Sbjct: 3   MQLAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+
Sbjct: 62  AVATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P
Sbjct: 121 MTAAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+    LL  K+  +  
Sbjct: 181 DVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG   N D         + ++  +V      ++   + IG +   N L  L + +
Sbjct: 237 QEVLTFGSLDNNDMCAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGN 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I    VD   KAL+ F     R +       +    ++ + YN+NP ++K  +    Q+ 
Sbjct: 296 IYHIPVDKMQKALASFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVP 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
               G+RI VLGDM E+GE +   H +LA+ ++   I  V+L G  +  L + L      
Sbjct: 353 TE--GKRIIVLGDMLELGEKAAEMHSNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDE 410

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             IH +  + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 411 TQIHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI 456


>gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 452

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 210/464 (45%), Gaps = 23/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   SLSQLAAILNGELHGA--DADIDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     T    G+ NN IGVP+TL R+  + ++ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILGECGNTLYTAGNLNNDIGVPMTLLRLTPEHEYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   LN D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPANGIAILNADNNDWLNWQS---VIGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +   +DF        S  +   ++     ++V+    G H   N L    +  
Sbjct: 235 KVWRFSPNLDTSDFSATNIHITSHGTEFTLRTPTGDVDVLLPLPGRHNIANALAASALAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR        NQ    L+D+SYNAN  SM AA  VLS++ 
Sbjct: 295 AVGAPLQAIKAGLAKLKAVPGRLFPVHLGENQ---LLLDDSYNANVGSMTAAAQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G+ +++ H  + E      I  V   G     +  A   S   
Sbjct: 352 ----GYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466
            +      +   +++ + +  ++  +VK S S     ++  L E
Sbjct: 405 EHFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQE 448


>gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 463

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 214/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELSGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F    +IA  K +I +G+   G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  D      ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGNQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I   +        G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVTDEDII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     + 
Sbjct: 341 NIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQV 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 401 YPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2,
           6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax
           paradoxus EPS]
 gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus EPS]
          Length = 479

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 211/468 (45%), Gaps = 12/468 (2%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL  T     Q I G  +   P   +  +  D+R++A  + F A+KG  +D +DF+  
Sbjct: 4   MTPLNMTLAQAQQWIPGSRLVGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQ 63

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A +KGA   + +      + +  +    V D L AL  L    R + +  +IA+TGS GK
Sbjct: 64  AKEKGAIAAIAH----HGLEAAGLAGLEVPDSLVALGALGAGWRAQFELPLIAVTGSNGK 119

Query: 120 TTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TT  +M+   L +    +  A  G++NN IGVPLTL R+       + ELGM+H GEI  
Sbjct: 120 TTVTQMIAAILVAFRADRALATAGNFNNEIGVPLTLLRLRARHQHAVLELGMNHPGEIAR 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ + RP IA++      H    + +E +A   A +F  L   GT    Y D+F  L   
Sbjct: 180 LSAISRPTIALVNNAQREHQEFMATVEAVAIENAAVFAVLPDDGTAVFPYGDTFTSLWTD 239

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H  G +   +FG+ + AD  L   +       + V+    + +   H  G H A N L
Sbjct: 240 MAHDGGSRRCMTFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNAL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAA 356
                       +D   + LS F P +GR K     L N+   TL+D+SYNANP S+ AA
Sbjct: 300 AATACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDSVIAA 359

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+ +     G  + VLGDM E+G  +  FH ++        I  V+  G        
Sbjct: 360 IDVLAGLP----GPHLLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYTLGTETAHTIA 415

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   + +  +    + L   + + L     V+VK S      R++  +
Sbjct: 416 AFQDADNGRHFNDYEALHAAVLARLPLVGSVLVKGSRFMKMERVVQAI 463


>gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 440

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 200/460 (43%), Gaps = 24/460 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +        +    VN I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     ++  +          VDD L A  KLA     ++K  +IA+TGS GKTTTK+
Sbjct: 63  AIISFSEKEVEQAH-------LLVDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +P
Sbjct: 116 MIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AHL +    E IA  K  I  GL   G +    D      +         
Sbjct: 176 ELAVITLIGEAHLEHMGSRENIAKGKMGITAGL--HGELIAPADPIINAFIPDN------ 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I  FG     D  + K  +  E+   E     +S+       G + A N ++   +  
Sbjct: 228 QKIIRFGLPGE-DLFITKLVEHKEKLTFETNFLDESIT--IPVPGKYNATNAMLAAFVGL 284

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     KA       E    R      +    L+ + YNANP +M+  +     I 
Sbjct: 285 HYGLSEAEIKKA---LKEVELTRNRTEWKKAKNGADLLSDVYNANPTAMRLILETFQAIP 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  GR+IAVL DM E+G  +   H D+ + +    I  V+L G  +  L + +     V
Sbjct: 342 KNENGRKIAVLADMLELGPSAAQLHKDILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKAV 400

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y   +D L   + + L   D V+ K SNS     ++  L
Sbjct: 401 SYFTDLDLLTESLSADLKPTDQVLFKGSNSMKLSEVVEKL 440


>gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 459

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 203/465 (43%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + + + G           ++G+S DSR+I     +  + G  +DG  F+     KG
Sbjct: 5   NLGQIAEMLGGSLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +++ D      ++SIP   VDD L AL  LA + R      +I ITGS GKTTTK+
Sbjct: 65  ASAFLIDRDYEIK-NNISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+  KT   IG+ NN IGVP T+  +  D +  + ELG    G+I   +++  P
Sbjct: 124 LLYEVLSTKYKTQKTIGNLNNEIGVPKTILSLNEDTEIAVVELGTDKFGDISLTSNIALP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  +HL N    E I  AK EI EGL   G    N DD   E +K +  +  +
Sbjct: 184 DIAIITNIGDSHLHNLKSKEGILKAKMEIVEGLSDDGIFIYNGDD---ETMKKEIDSYKV 240

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I SFG   + DF +++      +        G++ +     +G H   N    L I 
Sbjct: 241 DQKIISFGLEDDNDFVVKEIPSTPAKVSFS--HDGETYD--IPLLGRHNIYNGACCLLIA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +IL  D +     L    P   R            F ++D+SY +NP S+++ ++    +
Sbjct: 297 NILGLDTNEVKSGLVKVRPANNRSSMIEL----DGFDVLDDSYKSNPQSLRSGLATCKLL 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
             +    +I VLGDM E+G+     H ++   +   +I +    G     +      +  
Sbjct: 353 DGYNN--KIVVLGDMLELGDKEDELHYEVGLDIDPKDIHYCLFFGDLSYHMYKGALNNFP 410

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +    D L   ++S +    +V VK S+      +I  + 
Sbjct: 411 KDRAFHFTDKDDLIDKLKSFITKSTLVFVKGSHGMHMEEIIESIR 455


>gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
 gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
          Length = 453

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 138/465 (29%), Positives = 203/465 (43%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   AV  GA
Sbjct: 5   SLSHLAQLTQGQLIGD--DAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V          L +    V D   AL +L      R +   +AITGS GKTT KEM
Sbjct: 63  IALLVER-----ALDLPVAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T LVRP 
Sbjct: 118 VASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E     +  L  K
Sbjct: 178 VALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADK 234

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +F   S+ ADF        ++  +   +    + + +    IG H   N +    I 
Sbjct: 235 QVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANAIAASIIA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +      L    P +G   R           LID+SYNA+  +MKAA+ +L   
Sbjct: 295 LQFGASLAQIQSGLLNLMPVKG---RVDVQQLSDNIKLIDDSYNASVPAMKAAVDLLGSF 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +         
Sbjct: 352 T----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQLCGGKHF 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + E ++ +   + +       V+VK +NS G  ++   L E +
Sbjct: 408 SDHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           parahaemolyticus 10329]
          Length = 454

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 213/471 (45%), Gaps = 29/471 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +   G   G      ++ +S D+R+I     F A+ G  +D H+F   A + GA
Sbjct: 5   TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +      ++ P   V D   AL +LA       +   +AITGS GKTT KEM
Sbjct: 63  GALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  IE +  AK EI++GL+  G   +N D +   L ++    L  K
Sbjct: 178 IALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDALWQS---VLADK 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLG 301
            + +F  +   ADF         E  +   + +    + +E+    IG H   N +    
Sbjct: 235 KVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A V+     L   +  +G   R           LID+SYNA+  +MKAA+ +L 
Sbjct: 295 IALHMGATVEEIQFGLLNLNKVKG---RVDVEQLSSTIKLIDDSYNASVPAMKAAVDLLG 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + +     
Sbjct: 352 AF----HGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL---- 403

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            H  + ET   +  +I+  L     D   ++VK +N    + +   L E F
Sbjct: 404 CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454


>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 461

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 177/472 (37%), Positives = 251/472 (53%), Gaps = 13/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +L  A  G  +G      V GISID+R++   + F A+KG + DGH  I  A
Sbjct: 1   MSLLWTREELETATGGTFLGNT-SVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA  ++ ++    +       +  V D +  L KLA AAR R K  ++A+TGSVGKT
Sbjct: 60  LEKGAAAILAHSAEGFTDPR----ILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L+    T+A   SYNNH GVPLTLAR+P +  F I E+GM+H GEI  L  
Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEILPLAK 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P +AVITTI  AHL +   ++ IA  KA I   L K G   +  DD+          
Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVP-DDAHGTEFFTAEA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +++ G + ++   L      ++ S  +V +QGK+  V     G H+A+N +  L
Sbjct: 235 EKAQAVLWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNAVAAL 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L ADV  A  AL+ F P +GRG   +     G  TL+DESYNA+ AS++AA+ VL
Sbjct: 295 AACAALGADVAKAANALADFRPGKGRGALTQIV--GGAITLLDESYNASAASIRAALDVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             I      RRIAVLGDM E+GE S S H       +      V+  G ++  L DALP 
Sbjct: 353 RHIPAT---RRIAVLGDMRELGEFSISEHQA-LAAPAASAADLVFCCGSYMKTLFDALPP 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           S    ++E+   L   + ++L  GD V+VK S       +I  L    PA++
Sbjct: 409 SKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIAAL-NALPAVE 459


>gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
 gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
          Length = 481

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 178/476 (37%), Positives = 254/476 (53%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +  +A  G + G      V+G+SID+R++A  + F A+K    DGHDF+  A
Sbjct: 1   MSALWTAREAAEATGGTAQG---DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGAG  +V+            P+  V+DVL AL  L  AAR RS+A ++A+TGSVGKT
Sbjct: 57  LGKGAGAALVSHIPEGVAAD--APLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+   +T+A   SYNNH GVPLTLARMP D  F + E+GM+H GEI  L  
Sbjct: 115 STKEMLRTVLARQGRTHAAEASYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A++TT+A AHL  F  IE IA  KA IFEGLE  G   +N D     +L+  + 
Sbjct: 175 LARPHVAMVTTVAAAHLEAFENIEGIAREKAAIFEGLEPGGIAVVNADLDTTPILEEAAT 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G  +I  FG     D+ L   +   +++ +  ++QG++        G H A N L  L
Sbjct: 235 RAGA-SIRRFGTKAR-DYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMNGLGAL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKR----YRCALNQGFFTLIDESYNANPASMKAA 356
             V+ L  D   A   L+++ P  GRG R       A       LID+++NANP S++AA
Sbjct: 293 AAVAALGGDAGRAAPDLALWQPPAGRGTREDVMMDEARQGWVLDLIDDAFNANPTSLEAA 352

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+  +P         GRRIA+LGDM E+G    + H D+A    +  +  V   G  
Sbjct: 353 LEVLAAATPRDNVGRIARGRRIAILGDMLELGPNEIAVHTDIATWPLIAQLDTVHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L  ALPR+    +++  + +   +   +  GDVV+VK S       +   L  
Sbjct: 413 MRHLWQALPRAQRGTWADMAEEMVAELPDLVDAGDVVLVKGSKGSRVSLVAESLRN 468


>gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 452

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 215/473 (45%), Gaps = 27/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L+  +    IG      +  +S D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MITLM-LSQLVDVLDAQLIGD--DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++V+  +      + +P   V+D   AL KL        +   +AITGS GKT
Sbjct: 58  ASAGASALLVSKAV-----DVQVPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   ++   +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASIMTQKGQVLYTAGNFNNDIGVPLTLLRSQPEDDFAVIELGANHVGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  E  +    
Sbjct: 173 LVNPDVAMVNNVAAAHLEGFGSMDGVKRAKGEIYQGLKPGSVAIVNLDSNGGEHWRE--- 229

Query: 241 ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  KT+ +F  S N A+++ R         +   +Q    S +V    IG H   N L 
Sbjct: 230 VLSDKTVKTFSLSDNSAEYKARNVTMNVNGEASFTIQTPETSFDVKLGIIGQHNVSNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L A  +     L+     +G   R           LID+SYNA+  +MKAA  
Sbjct: 290 ATALSLELGATTEMIASGLANLSKVKG---RVETVDLTDSIRLIDDSYNASVPAMKAAAD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+       G R  VLG+M E+GE S + H  + E  + +   HV   G    A+ D  
Sbjct: 347 LLNSFD----GVRWLVLGNMAELGEESLALHRQVGEHAAPFKFEHVLTFGADTKAISDV- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468
                  + +T D +  FI+  L        ++VK +NS G  ++   L E +
Sbjct: 402 ---CQGMHFDTHDHMIEFIEQQLSQQTGPHTLLVKGANSAGMSKIAAALKEMY 451


>gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
 gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
          Length = 482

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 206/474 (43%), Gaps = 22/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   V  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSAADAAVWMAGAHLAG-PDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A +    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPAAMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +         A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
           + +P +A+I      H      +E +A+  A +   L   G      D      +  L +
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A   A G + +  FG    A          ++   ++VQ  G         +G H A+N 
Sbjct: 247 A---AAGTRRVLDFGIEGGA-VSAT-VTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L             +   +ALS F P +GR +R           ++D++YNANP S++AA
Sbjct: 302 LAATACALAAGIAPEVIAQALSAFAPVKGRLQR---KPGVHGGLVVDDTYNANPDSVRAA 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + D
Sbjct: 359 IDALATLPAP----RWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVD 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 415 AFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 451

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/462 (25%), Positives = 214/462 (46%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS+SI     F  I     DGHD++  A+  
Sbjct: 1   MNLKKLEEVVDGEGLQESFHYIEIHGVCIDSKSIKEGNVFVPIIRVK-DGHDYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +           +  P+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYGTPPKGM--PIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++++  LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 118 DIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSIIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT I  +HL      EEIA AK EI +GL+  G    N D+     L  K+  L 
Sbjct: 178 PDIVIITMIGHSHLETLGSKEEIAKAKLEIIDGLKDEGLCLYNGDEP----LLLKNKNLS 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T  +FG+    D      +        +  L    ++      G H   N ++ + + 
Sbjct: 234 SITCKAFGEKYTNDLFPTNVQLDEYGVHFK--LNDSKIQYDVPLHGKHNILNAIVGIAVG 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   KA            R++    +  FT+I++++NA+P+SMKAAI  L  +
Sbjct: 292 QFYNVPTEKIQKA---LRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQTL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + +   +++ V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   +   
Sbjct: 349 NAYK--KKMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKYD 406

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              V    +   +   +   +   D++++K S       ++ 
Sbjct: 407 IGKVQSFNSKAKIAEEVLKVITKKDIILLKGSRGMALEEIVQ 448


>gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
 gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
          Length = 477

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 171/476 (35%), Positives = 250/476 (52%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  GH      +    G+SID+R+IA  + F A+K    DGH+F+  A
Sbjct: 1   MTALWTSADAAAATGGH---TTQEWDAQGVSIDTRTIAQGDLFVALKDVR-DGHEFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V             P+  V DVL AL  L  AAR R+ A I AITGSVGKT
Sbjct: 57  LDQGAAAALVTHRPADVPAD--APLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L    K +A   SYNNH GVPLTLARMP D D+ + E+GMS+ GEI  L+ 
Sbjct: 115 STKEMLRAVLEKQGKCHAAEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEITPLSQ 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +PH+A++TT+A AHL++F  +  IA  KA I +GLE  G   LN D     +L+  + 
Sbjct: 175 MTQPHVAMLTTVAAAHLASFDNLAGIAVEKASIMDGLEPGGVAVLNGDIETSGILQDHAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG + +  FG++   D+ ++  +   + + +     G++        G H A N +  L
Sbjct: 235 KLGARQVL-FGETA-PDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAA 356
            +   L AD   A   +  + P  GRG R       A +     L+D+++NANP S+ AA
Sbjct: 293 AVAEALGADPVAAALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAA 352

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+  +P        +GRR+A+LGDM E+G+  Q  H ++A    L ++  V  +G  
Sbjct: 353 LEVLAAATPTDNVGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPL 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +L L  ALP     H++ET   L L     +  GDVV+VK S       +++ + +
Sbjct: 413 MLHLWQALPEEQRGHWAETAAELVLQAPRLVDAGDVVLVKGSKGSKVSLVVDAIRK 468


>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 211/464 (45%), Gaps = 17/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +    +       V+GISID+R+I   + F   +G H +GH F++ A +KGA
Sbjct: 4   TLKQLAAWLN-EDMAAFGDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +   D          P+  VDD   AL ++A A R   KA  I ITGS GKT+TK++
Sbjct: 63  GASLWQKDEPNPPEGY--PLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   K    IG++NN +G+P+T+ ++  D D  + E+GMS  GEI FL+ L RPH
Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSKLARPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I  AH+ +      IA AK EI +G++  G +F + D+   + L AK   L   
Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQHLQS- 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               FG   N           ++ S           +     +G H  +N L+ + I   
Sbjct: 240 --VPFGLESNNLLYADNIHANADGSHFTTH-GMMEGDFFISVLGRHQVKNTLVAMLISHK 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +    +            R +  L       I+++YNA P S+KAAI  ++  + 
Sbjct: 297 LGLSNEQIRTS---LEHVVLTDMRMQQILGTNGALFINDAYNAAPTSVKAAIQFMATSTI 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV- 424
             E  +  VLGDM E+G   + FH  LAE ++   I +V L G  +L L   L +     
Sbjct: 354 RPE--KWLVLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYKILEKRFEAE 411

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +  +    +   ++ +  +  +V++K S       ++   +
Sbjct: 412 RLLYTEDDYTAIIEKLEQA-NESSIVLLKGSRGMKLETILKAFM 454


>gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae DSM 12163]
          Length = 452

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 207/465 (44%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q   G   G      +  ++ D+R       F A+KG  +D HDF+L A+  G 
Sbjct: 5   TLQHIAQLTGGTLHG--SDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGC 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +    V D   AL +LA   R +S A I+A+TGS GKT+ KEM
Sbjct: 63  SGLLVSKRLP-----VDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +T    G+ NN IGVPLTL R+     + + ELG +H GEI + T LVRP 
Sbjct: 118 TAAILRECGETLYTAGNLNNDIGVPLTLLRLKPQHRYAVIELGANHQGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N + + +   +   H    K
Sbjct: 178 TALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINGESNDWPHWQQALHG---K 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T++ F   + ++DF        ++ +   +      ++V     G H   N L    +  
Sbjct: 235 TVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIANALAASALAL 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + LS      GR      + ++    L+D+SYNAN  SM AA  VL+ + 
Sbjct: 295 SVGAPLSAVRRGLSTLKAVPGRLFPLALSADK---LLLDDSYNANVGSMTAAAQVLAGMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   S   
Sbjct: 352 ----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGLLSHGISDA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            +      L       L       ++VK S S    +++ +L E+
Sbjct: 405 EHFADKAALGARAIELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 459

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 129/478 (26%), Positives = 207/478 (43%), Gaps = 31/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +   ++   IG      V  +S DSR       FFA+KG ++D HD+++ A
Sbjct: 1   MITL-SLSQIASILEAQLIG-DGNVTVENVSTDSRKAVNNGLFFALKGENFDAHDYVMKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++G    VV           +I    V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 59  AEQGCVAAVVEHPT-----EGNIAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTASILQQCAVDFDDVLFTQGNFNNDIGVPLTLLRLTEKHKFAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +  AHL  F  ++ +A+AK EIF GL   G   +N   ++ +  +
Sbjct: 174 YTTALAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTHHGVAIINQAHNYQQKWQ 233

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +   +G   +  F   +  ADF     +   + +   +     ++++    +G H   N
Sbjct: 234 KE---IGQHEVQYFSYDNPQADFYAEHIQFSEQGASFVLHTPQGNVQIDSPYLGEHNVSN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A +    K L      +GR        N     L+D++YNAN  SMK+
Sbjct: 291 ALAATALAMNVGATLAQVKKGLETPSLVKGRLFPIHPCDN---LLLLDDTYNANVGSMKS 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL +        R+ V+GDM E+G+ +   H ++ E      +  V   G     + 
Sbjct: 348 AISVLQKYPAF----RVFVVGDMGELGDNTPLCHQEVGEFAWAAKLDLVISFGRSSSVIS 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
                     +      L  ++   +         VV+VK S S     +I+LL   F
Sbjct: 404 AV----NFGRHFTDKTELVAYLTPIIKQQLTQQKVVVLVKGSRSMKMEDVIDLLKGNF 457


>gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
 gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
          Length = 440

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 203/448 (45%), Gaps = 22/448 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  ++ID+R +     F A+KG  +DGHDF   A             +V+    +  
Sbjct: 8   NVDITEVTIDTRQVTAGCLFVALKGERFDGHDFAEDA-----VAAGAGALLVSKRLLVGA 62

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V D   AL + A   R +  A ++A+TGS GKT+ KEM+   L          G++
Sbjct: 63  PQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNF 122

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  ++ AHL  F  +
Sbjct: 123 NNDIGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGSL 182

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLR 261
             +A AK EIF GL   GT  +N D   +   +   H    K ++ F     ++ DF   
Sbjct: 183 AGVAQAKGEIFAGLPANGTAIINADSHDWPHWQETLHN---KRVWRFSPHAAEDIDFYAS 239

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +   + ++  +      +++     G H   N L    +   + AD+    + L+   
Sbjct: 240 DVRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALAMSVGADLAAVRQGLTQLQ 299

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR    + A  +    L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+
Sbjct: 300 AVPGRLFPIQLAAGK---LLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAEL 352

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ +   H  + E      +  V   G   LAL DA     H    +    +   +   L
Sbjct: 353 GDTAVDCHRQVGEAAKQAGVDKVLSVGTLSLALSDASECGEH---FQDKSAIVTRVSELL 409

Query: 442 VDGDV--VVVKSSNSCGFYRLINLLLEE 467
           ++  V  V++K S S     ++  L E+
Sbjct: 410 LEHPVITVLIKGSRSAAMENVVRALQEK 437


>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
 gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
          Length = 452

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 211/462 (45%), Gaps = 17/462 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL + +    I +V    + GI+IDSR +   + F    G + DGHD+I  A +KGA 
Sbjct: 5   VKDLEKILNAKKINLVDNKEITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   S  +    +  V+D   A+  LA          I+AITGS GKTTTK+++
Sbjct: 65  ASLSLKDDFVSDNN----IIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTTTKDIV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  L +  K +   G++NN +GVPLT+   P D D  + E+G  + G++ FL+ LV+P  
Sbjct: 121 TSILETKFKVHKTQGNFNNELGVPLTILAAPEDSDILVLEMGADNFGQLDFLSKLVKPDY 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I  +H+  F     IA AK EI  G++K G    N D+   + L   S       
Sbjct: 181 TIITNIGESHIEFFGSRAGIAKAKFEITNGMKKDGFFVYNGDEPLLKELVENSSINAT-- 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S G++   D  L  +    ++   ++ +   +        G H   N++  + I   +
Sbjct: 239 --SCGENSYNDIILENYTITRDKIDFKLSIDKNNFSTTLK--GKHNLFNIMFAVAIAKKI 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    A+      +    R           +I+++YNA+P SMKAA+ V+S ++  
Sbjct: 295 GLTNEEIRHAIDNIS--KITNMRLESITYGEDSLIINDAYNASPTSMKAAVDVISDLNDF 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDAL-PRSIH 423
               +  VLG M E+G     +H  +   +  +  +I+ V   G     + D +  + I 
Sbjct: 353 EF--KTLVLGSMFELGPNEVEYHSGVGTYINNNSRDINLVISIGDLAKNITDNINNKDIS 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  T++ +  +++++    +V++ K+S S     +IN + 
Sbjct: 411 TLHFSTVEEVTDYLKANKHKNEVILFKASRSMKLETIINDIK 452


>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
 gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
          Length = 482

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 206/474 (43%), Gaps = 22/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSAADAAVWMAGAHLAG-PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A +    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPAAMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +         A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
           + +P +A+I      H      +E +A+  A +   L   G      D      +  L +
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A   A G + +  FG    A          ++   ++VQ  G         +G H A+N 
Sbjct: 247 A---AAGTRRVLDFGIEGGA-VSAT-VTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L             +   +ALS F P +GR +R           ++D++YNANP S++AA
Sbjct: 302 LAATACALAAGIAPEVIAQALSAFAPVKGRLQR---KPGVHGGLVVDDTYNANPDSVRAA 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + D
Sbjct: 359 IDALATLPAP----RWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVD 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 415 AFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
 gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
          Length = 465

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 226/470 (48%), Gaps = 25/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   + +  +G   G      +N +  DSR       F A+KG ++DGH F+  A
Sbjct: 1   MIPL-SLTTIAEVAKGTLQG--SDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  ++V       +   ++P   V D   AL  +A   R +    +I ITGS GKT
Sbjct: 58  KLQGAKALLVEH-----LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L       A  G++NNHIGVPLTL R+     + + E+G +H+GEI +   
Sbjct: 113 TVKEMVASILRQKGNLLATQGNFNNHIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCAS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P ++VI  +  AH+  F  +E +A AK+EI++ L + GT  +N D +F +    +  
Sbjct: 173 LAKPDVSVINNVEAAHIEGFGSVEGVAKAKSEIYQALSEEGTAVINLDSNFADQWIEQFA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQL----QGKSMEVVHHGIGYHMAQN 295
            L      +  + K+A+F     +     +    +Q       +S+ V     G H   N
Sbjct: 233 GLQK---ITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+   + S   AD++     L      +GR  +++ A       +ID++YNA+ AS+KA
Sbjct: 290 ALVAAALASAAGADMEIIKVGLETMVSVKGRLNQFKAA---NGALIIDDTYNASVASVKA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI  L+ +S    G ++ VLGDM E+G+ S+ +H ++ E     NIS + +SG  V    
Sbjct: 347 AIDYLTSLS----GTKVLVLGDMAELGDESEQYHREVGEYAKENNISQLLVSGHWVKYST 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +A        + E  + L   + S +     ++VK S S    ++++ L+
Sbjct: 403 EAF--GDKAQWFENKELLVSHLNSVIQSDYKILVKGSRSAQMEQVVDALV 450


>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 453

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 218/464 (46%), Gaps = 19/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ GA
Sbjct: 4   TLNEVLKAIDGELLIKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +++  +      +    V  V+D   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 64  TVAIIDEVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  L ++ RP
Sbjct: 124 LVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNEIHRLANIARP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT +  +H+      E I   K  I +  +K  T+ +NY++     +  K +    
Sbjct: 184 DMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYEND----MLQKVNESNE 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             I   G  K  D      +   E +  + V   G+      + +G H   N L+ + I 
Sbjct: 240 FKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRIS 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     L+ F     R +  +    +  FT+I++ YNA+P SMK+A+SVL   
Sbjct: 300 ENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSMKSALSVLKTY 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     R+IAVLGDM E+GE ++S H  + +   +     V  +G      K    +   
Sbjct: 356 S---GSRKIAVLGDMGELGEHAKSSHEMVGQDA-IGKADIVLTTGEFREDYKSGFGKDTV 411

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI---NLL 464
                  + L  ++ + + DGDV++VK+S S  F  ++     L
Sbjct: 412 T--FNCKEELKNYLCNLIKDGDVILVKASRSAKFEDIVKNIEAL 453


>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
 gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
          Length = 445

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 210/466 (45%), Gaps = 31/466 (6%)

Query: 11  LQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L AI G ++   PQ        G+S D+R + P   F A+ G  +DGHD++  A Q GA 
Sbjct: 5   LTAILGENLRRSPQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQAGAI 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +  +        +P + V+D L A   L    R +    +I ITGSVGKT+TKE++
Sbjct: 65  ALITSRPL-----ETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGITGSVGKTSTKELI 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  K      ++NN IGVP TL  +  D DF + E+ M   GEI  L  + +P I
Sbjct: 120 AGILGTQGKVLKTEANFNNEIGVPKTLLNLTPDHDFAVIEMAMRGPGEIARLAEIAQPTI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT +  AH+      E IA AK E+ E + K     LN D+   ELL A +  +    
Sbjct: 180 GIITNVGTAHIGRLGSREAIAKAKCELLEFMPKDSVAMLNADN---ELLMATAATVWSGE 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S+G S+  D               +V++  +         G H A N L  LG++ +L
Sbjct: 237 TLSYGFSQG-DLTGEYIAPD------QVKVADQVFP--VPLAGQHNALNYLAALGVMQVL 287

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  +         +GR +R           L+DE+YNA   SM AA+ +L Q    
Sbjct: 288 GFGW-QGLTTEISLAMPKGRSQRIVLP---NDIVLLDETYNAGLESMLAALDLLKQTP-- 341

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHV 424
              R IAVLG M E+GE S++ H  + E      +  +++        A+ D     +  
Sbjct: 342 -GDRHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVLVDDPEAQAIADGA-LGVPS 399

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                   L   +++++  GD ++ K+SNS G  R++  L + + A
Sbjct: 400 LCFPDHRSLIEHLRANMQPGDRLLFKASNSVGLSRVVEALQQTYSA 445


>gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 453

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 213/468 (45%), Gaps = 27/468 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +   +QG  +G      ++ +S D+R I P+  F A+ G  +D H F   A+  GA 
Sbjct: 6   LSTISHVVQGQLLGA--DSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V          + +    V +   AL KL      + +   IAITGS GKTT KEM+
Sbjct: 64  ALMVER-----ALDVDVAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+  +     G++NN IGVPLTL R     DF + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSAKGQVLYTAGNFNNDIGVPLTLLRSSQKDDFAVIELGANHIGEIAYTTQLVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL    T  +N D    EL    S  L  K 
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAPGKTALVNLDSHGGELW---SQVLVDKH 235

Query: 247 IYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F  + +NADF   +        +   +        V    +G H   N L    +  
Sbjct: 236 VKTFSVNQQNADFFASQIALNQAGEASFILHTPQGEQPVTLGILGQHNVSNALAASALAM 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A ++     L+     +G   R   +       LID+SYNA+  +MKAAI +L+  S
Sbjct: 296 EMGASIEEVAVGLAQLSAVKG---RVDVSQLTPMIRLIDDSYNASVPAMKAAIELLASFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  +LG+M E+G  S + H  + E  + +   +V   G     +     +    
Sbjct: 353 ----GCRWLILGNMAELGTESLALHQQVGEHAAPFQFDYVLTYGEDARVI----SQQCQG 404

Query: 425 HYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  T   +  FI+  L        V++VK +NS G  +++  L E+F
Sbjct: 405 QHFSTHQDMLTFIEQQLEVRASQSHVLLVKGANSSGMSKIVAALKEKF 452


>gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
          Length = 463

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L    KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVEDCLKTFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G+   G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +  D      ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGNQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I   +        G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVTDEDII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     + 
Sbjct: 341 NIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQV 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 401 YPAEQVHYFLKAEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine
           bacterium HP15]
          Length = 462

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 232/476 (48%), Gaps = 31/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   ++  +    +    + G +      G+S D+R++ P + F A++G ++DGH F+  
Sbjct: 1   MMRAFSLAEAKGWLGAQCASGDLASVSFAGVSTDTRTLEPGQLFVALRGENFDGHRFLQQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ KGA  +VV+T       +L++P   V++ L AL +LA A R  S A I+AITGS GK
Sbjct: 61  AMDKGAVGLVVDT----PDTNLALPQLVVNETLEALARLAAANREESTAAILAITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEM    LS + KT +  G+ NNHIGVPLTL  +  +  +G+ ELG S LGEI    
Sbjct: 117 TTVKEMCAAILSQMGKTLSTKGNLNNHIGVPLTLFGLSPEHQYGVIELGASGLGEIAHTV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +P +A++T    AHL  F   E I  AK EI +G+   G + LN DD  F   ++++
Sbjct: 177 ALAKPRVAILTNAGEAHLEGFGSYENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRSRA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLM 298
            A  +  +   G    AD+      Q +     +V      +  V  G+ G H   NML+
Sbjct: 237 GARRVAGVSRLG--AEADYHAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLL 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L A     +  L+   P +GR +    +      TLID+SYNANP+SMKAA+ 
Sbjct: 295 AIAATRELGASDQAIVAGLASVAPVKGRLQVLELSPE---MTLIDDSYNANPSSMKAALG 351

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+  +    G++IAVLG M E+G  + + H ++      + I  +   G       D  
Sbjct: 352 VLAGRA----GQKIAVLGAMAELGAKANALHREVGVCAREHGIDRLITVGPGCEGYADGF 407

Query: 419 PRSIH--VHYSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLEE 467
             S    + + + ++            GD      V+VK S S    R++  + E+
Sbjct: 408 GESTELGLSHEQAVESAI---------GDKNTPLTVLVKGSRSSAMERVVEGIKEK 454


>gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 450

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 214/464 (46%), Gaps = 22/464 (4%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++  ++ +   G  + G      + G++ DSR +   + F A++G   +G DF+  A+ +
Sbjct: 4   YSLKEIAEITGGALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQ 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG V+V+         +S P   V D L AL  L    R R    ++A+TGS GKTT K
Sbjct: 64  GAGGVLVD-------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+LT  L+      A  G+ NNH+GVPLTLAR+  +  + + E+GM+H GE+  L+ L R
Sbjct: 117 EVLTAILNQSGPVLATRGNQNNHVGVPLTLARLGPEHRYAVLEMGMNHPGELTLLSGLAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I   APAHL     +  IA+AK EI  GL+  G   LN DD F +    ++    
Sbjct: 177 PTLALINNAAPAHLEGLGSVAAIAAAKGEILSGLDNRGLTILNGDDPFADFWAERAPG-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              ++ F            W+   +    +EV+       +     G H  +N+L     
Sbjct: 235 --EVWRFSLEHRPTRVRGHWRAHEQGGGHLEVRAPQGQFTLEIPLPGQHNGRNVLAATTA 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    +A++      G   R +         ++D++YNANPAS++AA+ VL+ 
Sbjct: 293 ALALDIPIPQIQRAVAGLQTIPG---RLQWRSGPHGSRMLDDTYNANPASLEAALRVLAA 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G+RI VLGDM E+G  +  +H     +     +  ++  G       +A     
Sbjct: 350 QP----GQRILVLGDMGELGPEAALYHHQAGLLARQLGVERLYTLGSLAEEAANAF--GT 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +      +  L   +   L +  VV++K S +    R++  L E
Sbjct: 404 NAEAFSELPPLLAALHRRLDEETVVLIKGSRAARMERVVQALGE 447


>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 454

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 207/446 (46%), Gaps = 15/446 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V  ++ DSR + P   F A  G  +DGHDF   A++ GA  VV+N  +       S+
Sbjct: 22  ETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVLNHPVEGVPEEKSV 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 D   A+  L    R +    ++ +TGSVGKTTTK+M   A++    T    G+ 
Sbjct: 82  ---ICPDSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTIKTEGNQ 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P T+ R+  +  + + E+GMSH GEI  L+   RP + +IT I  +H+ N    
Sbjct: 139 NNELGLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIGNLGSQ 198

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I  AK EI  GL +   + LN DD F   L+       ++ ++     +NAD      
Sbjct: 199 ENICKAKLEICAGLPEGAPLVLNGDDPF---LRKAVLPDHVRPVWFSLGDENADVCALSI 255

Query: 264 KQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +Q  +     ++  +  +  V    +G H   N L      + L  +    I  L+ F  
Sbjct: 256 QQDEKGMSFVLEDHEEGTFLVKIPAMGRHNVANALAAYCAATRLGLNARRVIAGLADFEQ 315

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
               G R +    +G   +I++ YNANP SMKAA+++  +       RR A+LGDM E+G
Sbjct: 316 T---GMRQKVVHARG-VDVIEDCYNANPDSMKAALAMFREYP---CKRRFALLGDMLELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSL 441
           ++S++ H ++        + ++   G     +   A  + +   +++T       +   +
Sbjct: 369 DISRAAHEEVGRQAVENKVDYLVTYGEQAKRIAVVAAAKGLPTLHADTYAQAAETLLDKM 428

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
             GD ++VK+S      +++ +  +E
Sbjct: 429 QPGDALLVKASRGMALEKVLEIFYKE 454


>gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 455

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 126/471 (26%), Positives = 212/471 (45%), Gaps = 30/471 (6%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    +N I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +    D+         P   V+D L A   LA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVAIFSEKDLPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + RP
Sbjct: 117 MISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T +  AHL  F   ++IA  K +I +G++  G +    D      L         
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDSYLPEN------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  +     +   ++  +       +    +       G + A N ++   +  
Sbjct: 231 QMVIRFGDHQE--LNVTDIREEKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAYVGK 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  I+A       +    R           ++ + YNANP +M+  +   + I+
Sbjct: 287 LLAVADEDIIEA---LESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANIA 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L          
Sbjct: 344 KNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPE 403

Query: 422 IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 404 GHVQFFRKNQQADQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNRLVE 454


>gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
 gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
          Length = 476

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 169/454 (37%), Positives = 242/454 (53%), Gaps = 15/454 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+    G+SID+R++   + F A+     DGHDF+  A+ KGA   +V+           
Sbjct: 19  PEWQATGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVSHVPQGVPED-- 75

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P+  V DV  AL  L  A R R    ++A+TGSVGKT+TKEML   LS   KT+A + S
Sbjct: 76  APLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVAS 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNH GVPLTLARMP D +F + E+GM+H GEI  L  +  PH+A+ITT+A AHL  F  
Sbjct: 136 YNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALITTVAAAHLEAFED 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           I  IA  KA IFEG+   G   LN D     +L AK+    ++ I +FG+    DF+L +
Sbjct: 196 ITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRLRDI-TFGEH-GYDFKLMR 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + + +  Q+    +    +  G H A N L  + +++ L  DV  A+ +L  + P
Sbjct: 254 ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVALALGSLGRWTP 313

Query: 323 KEGRGKRYRCALN----QGFFTLIDESYNANPASM------KAAISVLSQISPHGEGRRI 372
            +GRG+R R  L+    + F  LID+SYNANP SM       AA  V + I    +GRRI
Sbjct: 314 YKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAKVTNDIGRVSKGRRI 373

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           A LGDM E+G    + H  LA + +   I  +   G  + AL DALP      + ET + 
Sbjct: 374 AYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDALPEPQRGTWFETAEE 433

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +++ +  GDVV+ K S S     +++ + +
Sbjct: 434 AATRVKTHIDSGDVVLAKGSLSMKLACVVDAIRK 467


>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 444

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 217/463 (46%), Gaps = 21/463 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  DLL A  G  +    + F    SID+R+I   + FFA+KG   DGH+F+  A+ K
Sbjct: 1   MFTLDDLLIATGGKLVSKGNEIF-KEASIDTRTIGKNDLFFALKGSKKDGHEFVDEALIK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            +G VV   + +         V  VDD L +L  LA   R + K  IIA+ GS GKTTTK
Sbjct: 60  ASGAVVSKNEGMDFKNKT---VVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS   K     G++NN+IGVPL ++R+  + +  + ELG +  G+I+ L  +V 
Sbjct: 117 ELIASFLSKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKELCDIVY 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A+IT I   H+  F  I+ +   + EI   L    T+F N DD F      +     
Sbjct: 177 PDYALITNIGYEHIEGFGSIQGVREGELEI---LPYVKTVFANGDDKFLMDGLKRYSG-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +FG SK  DF+       ++    +      +  V    +G +   N+   + + 
Sbjct: 232 --QILTFGMSKECDFRAENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNLTGAIAVA 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L     +  +    F   + RG+  +         +  ++YNANP+SMK A+  L   
Sbjct: 290 TFLGISKCSIQQITESFTSVKMRGEIIKI----NGVEIFFDAYNANPSSMKVALQEL--T 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R +AVLGDM E+GE +   H ++ + ++   I      G     +K+AL R ++
Sbjct: 344 RRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFIGVG---KFIKNAL-RYVN 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +          F++  L   ++V++K S +    +++ +L E
Sbjct: 400 GYVFNDPIQAAEFLKKELKGSEIVLIKGSRAMKLEKILEILKE 442


>gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
          Length = 457

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 140/476 (29%), Positives = 213/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  VV+  +      S+SIP   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGAVAVVIQQEN----SSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAASSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDVWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSSQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  + DM E+GE S + H ++ + +   N+  V   G     + D
Sbjct: 346 IDVLKSYDAF----RILCVADMKELGENSLAIHREVGQYVKSSNLDLVCSYGNESAVISD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+         + +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKVDMVDFLVPLIETQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 461

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 214/479 (44%), Gaps = 31/479 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     + Q ++   IG      +  +S D+R   P   FFA+KG  +DGH+++  A
Sbjct: 1   MIKL-NVKKIAQILKAKLIGE-ETLTIESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV+         + +P   V D   AL +LA   R   +   +AITGS GKT
Sbjct: 59  VAQGCTAVVVDHPC-----EIDVPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCGKT 113

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+    ++ + ELG +H GEI 
Sbjct: 114 TVKEMTAAILQRTAGDDEAVLFTEGNFNNDIGVPLTLLRLTEKHEYAVIELGANHAGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +  HL  P +A++  ++ AHL  F  +E +A AK EI+ GL   G   LN D ++     
Sbjct: 174 YTAHLTMPDVALVNNVSAAHLEGFGSVEGVAQAKGEIYSGLTPDGVAILNLDSNYAHYWG 233

Query: 237 AKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                +  +   SF      AD+   K       S   +     ++++    +G H   N
Sbjct: 234 GD---INDREFESFAYDHVGADYYAEKIMLSEYGSRFTLNTPKGAIKIELPYLGKHNVAN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    +   + A ++   + L      +GR    + + N     L+D++YNAN AS+K+
Sbjct: 291 AVAASALAMNVGASLEDIKRGLENPSHVKGRLFPIQLSTN---LLLLDDTYNANVASVKS 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVLS         RI   GDM E+G+ + S H ++A+     N+  V   G     + 
Sbjct: 348 AISVLSDYREAF---RIFAFGDMAELGDETISCHQEVADFAKAANLDLVVTYGSESAVV- 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQS----SLVDG-DVVVV-KSSNSCGFYRLINLLLEEF 468
               ++    +    + L   ++      L +  D+V++ K S S     +IN L + F
Sbjct: 404 ---SKACGGVHFSNKEALIASLKEIISHQLKENEDIVLLAKGSRSMKMEDVINSLKDRF 459


>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
 gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
          Length = 463

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 213/468 (45%), Gaps = 18/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F D+++A+ G  I          IS DSR +   + F A+KG  ++G++++  A +KG
Sbjct: 4   MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKG 63

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+     +   S    +  V +   AL +LA   R +    II +TGSVGKTTTK
Sbjct: 64  ASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L    K +   G++NN IG+P  L ++    +  + E+GM+  GEI  +    R
Sbjct: 124 DIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAAR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT +  AH+ N    + I +AK EI +   K  T+ +N D+     L+ K+  L 
Sbjct: 184 PDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNFTLN 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLG 301
                  G  +N+D          +    +V       E   + +  G +   N L+ + 
Sbjct: 244 -----RVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAIS 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    D   + +        R +  R    +  FT+I++ YNANP SMKAAI VL 
Sbjct: 299 CGRLLNMSYDEIREGVKNIKLTSMRMEIIR----KKEFTIINDCYNANPESMKAAIDVLK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419
           +   +   R+IAVLG M E+GE +   H ++       +I  +   G +    +      
Sbjct: 355 EFKSN---RKIAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEYKKDFERGFKST 411

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +  +    +  + L  FI   +  GD ++VK+S       +I  L +
Sbjct: 412 NKKGNFMGFDKYEDLKDFILKYIERGDTILVKASRFMKLEIIIETLKK 459


>gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 469

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 211/478 (44%), Gaps = 23/478 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+     + + + G       P+  V   +  DSR   P   F A+ G   DGHD+ L
Sbjct: 1   MQPML-LSTIAEVVGGTLADAPDPEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYAL 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGS 116
            AV+ GA  V+           + +P   VDDVL A  +L     A       I+AITGS
Sbjct: 60  SAVKAGAAAVLATRP-------VGVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+++   L +  +  A   S+NN IG+PLT++      D+ + E+G   +G IR
Sbjct: 113 AGKTSTKDLIAQLLPAAGRVVATPESFNNEIGLPLTISMADPSTDYLVLEMGARGIGHIR 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  PHI+V+T +  AH+  F G ++IA AK EI E L  +G   LN DD     + 
Sbjct: 173 DLTRIAPPHISVVTNVGTAHIGEFGGRDKIAVAKGEIVEALPASGLAVLNADDPLVLAMA 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A++ A     + SFG S  A  +       +   +   +     S  V    +G     N
Sbjct: 233 ARTTA----RVSSFGLSDEATVRATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +       V      LS    +     R   +      T+++++YNANP SM++
Sbjct: 289 SLAAAAVAREAGLSVADIADLLSAATARSRW--RMEVSARADGVTVVNDAYNANPDSMRS 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----V 411
           ++  L+ ++   E R IAVLG M E+G  S++ H  +  + +  ++  +   G      +
Sbjct: 347 SLEALATMARGPEQRAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIVFVGGEEAGWM 406

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                A        +    D     +  +L  GDVV+VK+S      RL   LL+  P
Sbjct: 407 RQAAAAAGAGGRAVHVPDQDAALQHLSDTLRAGDVVLVKASRGIQLQRLAERLLQPDP 464


>gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
 gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
          Length = 457

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 214/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G+  VVV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VAQGSVAVVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
 gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
          Length = 483

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 210/472 (44%), Gaps = 43/472 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              +  +  DSR + P   F A+ G   DGH F+   V +GA   +V+ + + ++ S   
Sbjct: 14  NAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTALASNLD 73

Query: 82  ------------------SIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                             ++P     +  VDD L AL ++AV  R     T+I ITGSVG
Sbjct: 74  TVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMFTPTVIGITGSVG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++    S   +T     S+N+ + +P TL  +  D    + E+GM   GEIRFL
Sbjct: 134 KTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFL 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L RP I ++T + P+HL     IE IA+AKAE+ E L   G   LN DD     + ++
Sbjct: 194 ATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRVAAMASR 253

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     + ++G + NAD +L            + V  +G+S  +    IG H A   L
Sbjct: 254 TAA----RVLTYGYAPNADVRLLDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAYTAL 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    +L  D D   + L     + G   R R    Q   T+ID++YNA P S  AA+
Sbjct: 310 AAIAAGLVLGLDWDAIAEGL----REPGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAAL 365

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL++     +GRRIAVLG+M E+G  S   H  +    +      +   G     + +A
Sbjct: 366 QVLAET----KGRRIAVLGEMLELGAASVEGHQQVGAAAATM-ADVLVAVGRQAHTMAEA 420

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  +  +   +  +     +   +  GD +++K S       ++  L 
Sbjct: 421 ARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMETIVAALQ 472


>gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
          Length = 454

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 213/471 (45%), Gaps = 29/471 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +   G   G      ++ +S D+R+I     F A+ G  +D H+F   A + GA
Sbjct: 5   TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +      ++ P   V D   AL +LA       +   +AITGS GKTT KEM
Sbjct: 63  GALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPV 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  IE +  AK EI++GL+  G   +N D +   L ++    L  K
Sbjct: 178 IALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDALWQS---VLADK 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLG 301
            + +F  +   ADF         E  +   + +    + +E+    IG H   N +    
Sbjct: 235 KVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A V+     L   +  +G   R           LID+SYNA+  +MKAA+ +L 
Sbjct: 295 IALHMGATVEEIQFGLLNLNKVKG---RVDVEQLSSTIKLIDDSYNASVPAMKAAVDLLG 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + +     
Sbjct: 352 AF----HGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL---- 403

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            H  + ET   +  +I+  L     D   ++VK +N    + +   L E F
Sbjct: 404 CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454


>gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 470

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 189/467 (40%), Positives = 262/467 (56%), Gaps = 5/467 (1%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN PLWT  +   A+ G   G  P     G+SIDSR++ P + F A++GP++DGHD +  
Sbjct: 1   MNRPLWTSAEAAAAVAGTPSG--PAWEARGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA   +V+            P+  V D + AL  L VA+R RS A I+A+TGSVGK
Sbjct: 59  ALAGGAAGALVHKLPKGVQDD--APLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T +KEML +ALS    T+  +GS+NNH GVPL+LARMP    + IFE+GM+H GEI  L 
Sbjct: 117 TGSKEMLALALSDQGVTHYSLGSFNNHWGVPLSLARMPAGSRYAIFEIGMNHPGEITPLV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+AVITT+   H+  F+   EIA+AKAEIF+G+E  G   L  D++ F  L   +
Sbjct: 177 RMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPRDNAHFAFLAEAA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              GI  I SFG    +  +L       + + +   L  + +       G   A N L  
Sbjct: 237 AKAGITHIRSFGNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGVAGRQWATNSLAV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L ADV+ A  AL+     +GRG+R R  ++ G F LIDESYNA+P SMKAAI+ 
Sbjct: 297 LLAVEALGADVNLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYNASPVSMKAAIAA 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ + P   GRRIAVLGDM E+G      H  +AE +  +NI  V+ +G     L DAL 
Sbjct: 357 LASVKPAKGGRRIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTAGILTAHLHDALA 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 ++   D +   +++++  GDVV+VK S      R++N L E
Sbjct: 417 EQRRGGHAADSDAVSALVKAAVRPGDVVMVKGSAGSRMGRVVNALAE 463


>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 453

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 212/469 (45%), Gaps = 19/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  DL + +      I     + GI+IDSR +   + F    G + DGH+FI  A
Sbjct: 1   MKYLVT--DLEKILNAKKANITSNVEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +   D   S  +    +  V+D   A+  LA        A  IAITGS GKT
Sbjct: 59  FEKGAAASLSLKDDFVSENN----IIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++T  LS+  K +   G++NN +GVP+T+   P D +  + E+G    G++ FL+ 
Sbjct: 115 TTKDIITSVLSTKYKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADDFGQLDFLSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P   VIT I  +H+  F   E IA AK EI  G++K G    N D+   + L   S 
Sbjct: 175 LVEPDYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGDEVLIKTLVDSSE 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S G++   D  L  +    ++   ++ +  +         G H   N++   
Sbjct: 235 INAT----SCGENSYNDIILESYTITRDKIDFKLNISDEQYFTKLK--GKHNLYNIMFAT 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I S +    +   KA+   +  E  G R +    +    +I+++YNA+P SMKA + V+
Sbjct: 289 AIASKIGLTNEEIHKAIE--NTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVV 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLAL-KDA 417
           S         +  VLG M E+G    ++H ++ E +S    +I  V   G     + K  
Sbjct: 347 SSYDDFDY--KTLVLGSMFELGPNEVNYHGEVGEYISENTNDIDLVISVGDLAENITKQI 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               I   +  T   +  +++++    +V++ K+S S     +I  + +
Sbjct: 405 KNDKIKTLHFPTTAEVSEYLKNNKHKNEVILFKASRSMKLETIIEEITK 453


>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 459

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 178/468 (38%), Positives = 239/468 (51%), Gaps = 17/468 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + QA  G +        V+G++ DSR +   + F A+KG + DGH FI  A+
Sbjct: 3   TPLWTARTIAQATGGIA---SADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKAI 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +V  T +         P   V D   ALN L  A+R RS   II +TGS GKT 
Sbjct: 60  AAGAAGIVCETAIDH-------PHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKTG 112

Query: 122 TKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TKE L  AL      K +  + SYNNH+GVPL+LARMP   DFGIFE+GM+H GE+  LT
Sbjct: 113 TKEALFAALDRFRPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGELAALT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A++TTIAPAH+  F   E IA AK EIFEGLE  GT  + +D   +  L+AK+
Sbjct: 173 RIVRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGTAIIPFDSPHYARLRAKA 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  I SFG ++ AD +   W       S +  Q+Q   +       G H   N L 
Sbjct: 233 EQHAA-HIVSFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVANSLA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V  +  D+  A  A +      GRG R+R A+  G   +IDESYNANPASM A I 
Sbjct: 292 VLAAVKAVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASMAATI- 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              Q++     R++A+LG M E+G   +++H  LA  L    +    L G  +  L  AL
Sbjct: 351 --GQLAGESADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFALLVGEEMAPLAKAL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              I   +          +   +  GD V+VK SNS G   ++  L+ 
Sbjct: 409 EGRIDFAHVPAHPDATARLGGLIRPGDAVLVKGSNSVGLSHVVTALIN 456


>gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
 gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
          Length = 450

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 249/461 (54%), Gaps = 18/461 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +W    L  A+      ++ Q  +   I  +S+ I   + F A++G   DGHD+I  A+ 
Sbjct: 2   IWNSKTLSDALG----LLISQSIITNEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAIN 56

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  V+V+  +  +  +    +  VDD L AL +LA+  R  S A  IAITGSVGKT+T
Sbjct: 57  QGASAVIVSKQVDIADKN---KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTST 113

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L     T+A  G++NNH+G+ + LA MP D +F IFELGM+H GEIR L  ++
Sbjct: 114 KEALKTLLQHEALTFASRGNFNNHLGLLINLASMPDDTEFAIFELGMNHKGEIRELVQIL 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P+IA+IT I+ AHL  F+ +E+IA AK EIFE  +K G   +N D + ++ + +    L
Sbjct: 174 KPNIAMITNISEAHLEFFNSLEDIAEAKCEIFESFDKDGIAVINSDSNCYDRILSILKKL 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I+ I++F KS +A+  L  ++   EQ  ++ ++    +E     I  H A+N    L I
Sbjct: 234 SIENIHNFDKSSSAELIL--YEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLI 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +L  D++ A   L      +GRGK     +N G   +I + YNA+P SMKAA+  L Q
Sbjct: 292 IFLLNQDLNKAAGYLKNIPMTKGRGK----IINIGNSRIICDYYNASPTSMKAALEYLKQ 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +       + A++G+M E+G+ S+  H +L   +     S V+L G +   + DALP  I
Sbjct: 348 MPATN---KTAIIGEMLELGQNSERLHKELVPYILDLGCSKVFLVGANTKYIYDALPEKI 404

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              Y + +D L         + +++++K S      ++I+ 
Sbjct: 405 TKAYFKNIDELIASTNDLFKNDELILIKGSRGIKLDKIIDY 445


>gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
          Length = 480

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 248/475 (52%), Gaps = 17/475 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LWT  +  +A  G           +G+SID+R++AP + F A+K    DGH+F+  A+
Sbjct: 1   MALWTAAEAARATGG---DNRTDWTADGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQAL 56

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KGA   +V             P+  V DVL AL  L  AAR R+ A + AITGSVGKT+
Sbjct: 57  EKGAAAALVTHRPEGVAAD--APLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +KEML  AL    +T+A   SYNNH GVPLTLARMP D ++ I E+GM+H GEI  L  L
Sbjct: 115 SKEMLRAALERQGRTHAAEASYNNHWGVPLTLARMPADTEYAIVEIGMNHPGEIAPLARL 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPH+A++T +APAHL  F  IE IA  KA IFEGLE  GT  +N D     +L+A + A
Sbjct: 175 ARPHVAMVTIVAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEA 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G   I SFG       +L   K     +    +L    + +     G H A N L  L 
Sbjct: 235 AGA-EIVSFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATEGAHFAVNALGCLA 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAAI 357
             + L AD   A+  L+ + P  GRG R    L+ G       LID+++NANPAS+ AA+
Sbjct: 294 TAAALGADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANPASLAAAL 353

Query: 358 SVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+   P        +GRRIA+LGDM E+G  +   H  +A+  ++ ++  V   G  +
Sbjct: 354 EVLAAARPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLVHCVGPLM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             L  ALP      + E  + L       +  GDVV+VK S      R+++ + +
Sbjct: 414 RELHRALPDGRRGRWVENAEDLAAKAARLVDPGDVVLVKGSKGSRVSRVVDAIRK 468


>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 458

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 211/464 (45%), Gaps = 25/464 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W+  ++   + G   G        G+S D+RS+   + F A+ GP YDGH F+   +  
Sbjct: 3   IWSLAEIASKVGGELHGG--DTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSDDLP- 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  V+V+      +    +P   VDD   AL +LA A R     T++A+TGS GKTT K
Sbjct: 60  -AAGVMVSR-----LLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML+        T A  G+ NN IGVPLTL  M  +  + + E+G +H GEI +LT L R
Sbjct: 114 EMLSAIAREHAPTLATRGNLNNDIGVPLTLLEMARNHRYAVVEMGANHHGEIAYLTSLAR 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   PAHL  F  IE ++ AK EI+ GL   G   +N DD + +     +    
Sbjct: 174 PDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGPDGVAVINADDIYADYWYGLNPG-- 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + SFG    A+     W+       + + + G+   +     G H A N L      
Sbjct: 232 -RRVISFGLDHVAEVSGE-WQAPG---SLRLHMNGRVHALELAFPGRHNALNALAAAAAA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +  ++ L+  HP  G   R      +G   L+D+SYNANPAS +AA+ VLS  
Sbjct: 287 LGAEIPEEAILRGLARVHPVSG---RLVAVPGRGGALLLDDSYNANPASTRAALEVLSG- 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  VLGDM E+G+  ++ H ++        I H    G        A      
Sbjct: 343 ---HGGERCMVLGDMGELGDEGETLHAEIGARARELGIEHFHAVGPLSAHAVRAFGEG-- 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      L   ++  L  G  V+VK S S    R++  L  +
Sbjct: 398 AQHHPDQAALIEALRPMLHAGMTVLVKGSRSARMERVVQALQAD 441


>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
 gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
          Length = 460

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 203/464 (43%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ + I G           + G+S DSR+I     +  + G  +DG  FI     KG
Sbjct: 5   SLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTK 123
           A   + +TD      ++SIP   V+D L +L  LA A R   K   +I ITGS GKTTTK
Sbjct: 65  ASAFLADTDCKIK-NNISIPYIRVEDTLKSLQDLARAYRSELKNTKVIGITGSNGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L   L    K    IG+ NN IGVP T+  +  D +  I E+G    G+I   T++ R
Sbjct: 124 DLLYEVLKEKYKVQKTIGNLNNEIGVPKTILSLDEDTNIAIVEMGTDSFGDISLTTNISR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +HL      E I  AK EI EGL + G    N DD   +  K  S    
Sbjct: 184 PDIAIITNIGDSHLEKLKTKEGILKAKMEIVEGLSQDGYFIYNGDDPTMK--KEISSYEV 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + SFG+  + DF ++       +  +     G++       +G H   N  +T+ + 
Sbjct: 242 KQKMISFGEEDDNDFVVKS--SDDNRGKVSFTHDGETYT--IPLLGSHNIYNGGVTVLVS 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S+L    D   K LS   P   R            F ++D+ Y +NP S+++ +     +
Sbjct: 298 SLLGLSTDQIKKGLSEVTPANNRSSIIEFE----GFDVLDDCYKSNPQSLRSGLKTTKLL 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
             +    +I VLGDM E+G+     H  +   +   +I +    G     + +    +  
Sbjct: 354 GGYDS--KILVLGDMLELGDSEDDLHYQVGSEIDPKDIDYCLFFGSLSKHMYEGALENFS 411

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              + +  + + L   ++S +    +V VK S+      +I  +
Sbjct: 412 KDRIFHFTSKNDLIDKLKSLITKSSLVFVKGSHGMHMEEIIESI 455


>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
 gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 202/471 (42%), Gaps = 26/471 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L        +    Q F   +S D+R+I     F  +KG  ++GHD++  A++ 
Sbjct: 1   MLTSSLLESLTISTRLNETEQSF-TAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKS 59

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA   +                ++ V D L AL ++A A R++    +I ITGS GKTTT
Sbjct: 60  GAQAALWEEGQPVPAALPDDFQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L   LS   +TY   G+YNNHIG+PLT+  MP    + I E+GMS  GEI  L+ + 
Sbjct: 120 KDILASLLSLEGETYKTQGNYNNHIGLPLTILAMPSTCKYLILEMGMSGYGEIERLSEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A++T I  +H+        IA AK EI EGL   G +F++ D+   +  K  S   
Sbjct: 180 KPDLAIVTNIGESHMEQLGSRAGIAKAKMEIKEGLSPAGFLFIDSDEPLLDGWKQSS--- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I   G + +AD  +       +    ++    +        +G H  +N    + +
Sbjct: 237 ----IMRVGFN-HADILVENVAATVDGYQFDI----EGHHFELSLLGKHNVKNAAYCIAV 287

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                                     R           +++++YNA+P SM AAI  L  
Sbjct: 288 ARKFGLVTSKIQTG---LRQISLTSMRLEKLTGNKGELIVNDAYNASPTSMIAAIDALKA 344

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           I  +   +R+ VLGDM E+G   ++ H  +A+V++   I+HV   G     + +      
Sbjct: 345 IPSYE--KRVVVLGDMFELGTEEEALHKSVAQVITP-PITHVLTLGDRAKWIYEEASHIS 401

Query: 421 ----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  + +  T   L   +   +    V++ K+S       +I    ++
Sbjct: 402 SSSTFDEMAHFTTKQELADHLSKLVDQKTVILFKASRGMKLEEVITAYQDK 452


>gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 170/452 (37%), Positives = 244/452 (53%), Gaps = 13/452 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+SID+R++ P + F A+     DGHDF+  A+ KGAG  +V+   +      + 
Sbjct: 20  DWTVSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVSR--IPEGVRTTD 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+DVL AL +L  A R R++A ++AITGSVGKT+TKEML   L    + +A   SY
Sbjct: 77  PLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHAAEASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP + DF + E+GM+H GEI  LT L RPH+A+ITT+A  HL  F  +
Sbjct: 137 NNHWGVPLTLARMPRETDFAVIEIGMNHPGEIAPLTRLARPHVALITTVAAVHLEAFENV 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA  KA I+EGLE  G   L  +     +L A++     + + +FG       QL   
Sbjct: 197 EGIAREKAAIYEGLEPAGVAILPGEIDTTTILLAEADKRAGR-VETFGLGAANTLQLTHL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +  ++++   +  V     G H A N +  LG V  L  DV  A + L+ + P 
Sbjct: 256 DLTDTATVAQIEVGEVTHLVRLATPGRHFAMNAVAVLGAVRALGGDVTLAARDLTFWTPP 315

Query: 324 EGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLSQISPHGE------GRRIAV 374
            GRG R    L+   +   TLID+++NANP SM AA+ VL+   P         GRR+AV
Sbjct: 316 AGRGTREFVQLDPVEREGVTLIDDAFNANPTSMAAALEVLAATKPAHGHGRIARGRRVAV 375

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G    + H  LA++  L  I  V  +G  +  L  ALP      +SE  + L 
Sbjct: 376 LGDMLELGPDEAALHAGLADLDHLDAIDQVHCAGPLMHHLWAALPAEKQGRWSEKAEDLA 435

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + +  GDV++VK S      R+++ + +
Sbjct: 436 AEAHNLIDAGDVLLVKGSKGSRVSRVVDAIRK 467


>gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 459

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 134/473 (28%), Positives = 213/473 (45%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   L   +    +G   +  V  +S DSR    +  FFA+KG H+D H ++  A
Sbjct: 1   MITL-SLSQLASILDAQLLG-DGELTVENVSTDSRQSISKGLFFALKGEHFDAHHYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G    VV     +      I    V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VEQGCIAAVVERQTNSP-----IAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSS----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H+GEI 
Sbjct: 114 TIKEMTAAILQQSAVDFDDVLFTHGNFNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +A AHL  F  ++ +A+AK EI+ GL   GT  +N   ++ +  +
Sbjct: 174 YTTALAQPDVALVNNVAAAHLEGFGSLDGVATAKGEIYRGLTSNGTAIINLAHNYQQKWQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+     ++  Y    +  AD+         + +   +     S+++    +G H   N 
Sbjct: 234 AEIADHSVQ--YFAYDNPKADYYAENIVFSEQGASFLLHTPKGSIQIHSSYLGEHNVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L++    +GR        N     L+D++YNAN  SMK+A
Sbjct: 292 LAATALAMNVGASLQDVQNGLAMKSQVKGRLFPIEPCEN---LLLLDDTYNANVDSMKSA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ISVL +        R+ V+GDM E+G+ +Q  H ++A+      +  V   G     +  
Sbjct: 349 ISVLQKYPAF----RVFVVGDMAELGDNTQLCHQEVADFAHAAKLDLVLSCGNASEVISA 404

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLEEF 468
                     +E    L   I+  L +   VV+VK S S     +I+LL + F
Sbjct: 405 VNSGKHFTDKTELASYLISVIKQQLTEQKVVVLVKGSRSMKMENVIDLLKDSF 457


>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
 gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
          Length = 452

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 120/444 (27%), Positives = 201/444 (45%), Gaps = 17/444 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+SI++R++ P + F   +G + +GH ++  A++ GA   +   D   +     +P+ 
Sbjct: 23  ITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELGASASLWQRDEPGAPED--LPLL 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL ++A A R    A +I ITGS GKT+TK+++   L    K     G++NN 
Sbjct: 81  FVEDCEVALQEMARAYRDELSAMVIGITGSNGKTSTKDLVASVLKPYFKVQKTPGNFNNQ 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G+PLT+  +  D    + E+GMS  G+I FL+ L RP  A+IT I  AHL +    E I
Sbjct: 141 LGLPLTILSLEEDTKVAVLEMGMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EI  GL++ G +F + D+   +               SFG   N +  +   K  
Sbjct: 201 AEAKFEITAGLQQHGKLFYDGDEPLLQPFME-----AFPQGVSFGFDDNNELTVTDIKAT 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S   V             +G H  +N L  + +        +               
Sbjct: 256 ESGSSFMVS-GIIDAAFTIPVLGEHQVKNTLAAILVALEAGLSEEQI---RKSLKDAALT 311

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +          I+++YNA P+SM AA++ + + +   + ++  VLGDM E+G+  Q
Sbjct: 312 DMRMQMIQADNGAIFINDAYNAAPSSMNAALNFIRETT--MKDKKWVVLGDMLELGDDEQ 369

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSE-TMDGLFLFIQSSLVD 443
           S+H  L++ +S  N+  V L G  +  L D L       + +SE     +   ++     
Sbjct: 370 SYHEALSKCISD-NLVGVCLYGPRMKWLYDKLQPTYGGRLLWSEADYGPIIDLLKKYTNK 428

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
             V++VK S       +I   + E
Sbjct: 429 DSVILVKGSRGMALENVIEPFVNE 452


>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
 gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
          Length = 464

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 213/468 (45%), Gaps = 24/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +   AIQ   +G         +  DSRS+   + F A+KG ++DGH F   A+ +
Sbjct: 1   MMLLSEAANAIQATLLGA--DVTFTSVGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++   +        P   VDD   +L +LA   R +    + A+TGS GKTT K
Sbjct: 59  GAAAVLISDRTLNVQ-----PAILVDDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVK 113

Query: 124 EMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML   L +         A +G+ NNHIG+PLTL ++     + + E+GM+H GEI +L+
Sbjct: 114 EMLASILRAACDQPDAVLATVGNLNNHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P +A+I     AH+      E IA AK EIFEGL    T  +N DD F  L    +
Sbjct: 174 RIGKPTVALINNAGNAHIGELGSFEAIARAKGEIFEGLAADATAVINADDVFAPLWLDLA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G + I +FG    AD    +++  +  S +E+     +++V     G H   N L  
Sbjct: 234 ---GQRKIMTFGLKNKADVTA-QYQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 + A +      L  +   +G   R +         +ID++YNANP SMK AI V
Sbjct: 290 TSTALAMGASLQAVSIGLENYAGVKG---RLQQKAGLNGALVIDDTYNANPMSMKVAIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +S    G +I VLGDM E+G+ +   H ++        +  +++ G           
Sbjct: 347 LMAMS----GEKILVLGDMGELGDNAAEMHAEIGSYAKASGLKSLFVLGDMSAETAKTFG 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 +  T   L   ++  +  G  V+VK S      R++N ++ +
Sbjct: 403 AG--AKHYTTPQDLVTDLRKQMQQGTNVLVKGSRFMAMERVVNEIVTK 448


>gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
 gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
          Length = 454

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 218/468 (46%), Gaps = 23/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +    +G   G   +  ++ +S D+R+I     F A+ G  +D H+F   AV  GA
Sbjct: 5   TLSQIADITRGERFGD--ELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +      +++P   V D   AL + A       K   +AITGS GKTT KEM
Sbjct: 63  GALLVEKRL-----DVNVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +           L  K
Sbjct: 178 IALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGIAIVNLDSNGEAKW---DEVLADK 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + +F +S  +ADF        +   +  ++ +    + +E+    IG H   N +    
Sbjct: 235 KVITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A ++     L   +  +G   R           LID+SYNA+  +MKAA+ +L+
Sbjct: 295 IALQMGATLEEVRAGLKHLNKVKG---RVEVEALSEKIKLIDDSYNASVPAMKAAVDLLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + D L + 
Sbjct: 352 AFP----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISD-LCQG 406

Query: 422 IHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           IH   + E ++ +   +  ++ +   ++VK +N    + +   L E +
Sbjct: 407 IHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida F1]
 gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas putida F1]
          Length = 455

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 216/466 (46%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + PL +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 2   LKPL-SLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +  + +P   V     AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----VAGVDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGGIAILNLDDKAFDIWKARA- 233

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G   + SF +S   ADF      + +       +   G+++ V  + +G H   N L 
Sbjct: 234 --GAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   +      L+   P +G   R    +      +ID+SYNANP SM AAI 
Sbjct: 292 AAAAAHAVGLSLSGIAAGLAAVQPVKG---RTVAQIAPNGVRVIDDSYNANPTSMCAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 --GANGRHFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
 gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
          Length = 457

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 212/449 (47%), Gaps = 23/449 (5%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I ++    ++GI+ DSR I P E F A++G ++DGHDF   AV KGA  ++V+  +    
Sbjct: 22  IDVIDDFLIDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAIALIVDHHISVKS 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IP   V D L A  ++A   R +    +IAITGSVGKTTTKE+++  LS+    + 
Sbjct: 82  TK-QIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVHK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IGVP TL  +    D+ + E+GM  L EI  L+ + RP I +IT +  AH+ 
Sbjct: 141 TKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIG 200

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E IA AK E+   +    T   N+D+S   LL   +  +      S+G  +  D 
Sbjct: 201 RLGSKEAIAQAKCELLAEMPPDATAIFNHDNS---LLVQTAKKVWKGETISYGL-EGGDI 256

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                          ++++G          G H A N L  + +   L  D    +    
Sbjct: 257 TGELLDNQ------TLRVEGMDFP--LPLPGRHNALNYLGAIAVAKCLKLD-CNVLMQGI 307

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
             +  +GR +RY+ +   G   L+DE+YNA   SMKAA+ +L +I      R +A+LG M
Sbjct: 308 SVNLPKGRSRRYQLS---GDILLLDETYNAGLESMKAALELLKEIPGQ---RHLAILGTM 361

Query: 379 CEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            E+GE S   H ++ E      I H  V +     +A+ D     +      T + L   
Sbjct: 362 KELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADGA-LGMVTECLPTQEELIKR 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  GD ++ K+SNS G  R++    
Sbjct: 421 LTEIVQPGDRLLFKASNSVGLNRVVEAFR 449


>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 483

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 213/470 (45%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G H DGH ++  A   
Sbjct: 27  MKLAEIAKAINAQNEIEQWKDIEVTSVSFDSRHLERGALFIPLQGAH-DGHQYVETAFTN 85

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    + +   PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 86  GAAATLWASDH--ELTNNGHPVLVVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTK 143

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 144 DMIASILSTQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVS 203

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   + IA AK EI  GL++ G +  + D+       AK     
Sbjct: 204 PDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLLVYDGDEPLLNERAAKVAQQT 263

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+    D               +V  +    +     +G +   N L  + + 
Sbjct: 264 SR----FGRQLTDDLYATSVTAGPRSISFKVN-EWPDEQFTIPMVGEYNVNNALAAMVVA 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L         AL+     E R + ++    +    ++ + YN+NP + K  +  L+ +
Sbjct: 319 KRLHISPAHIKTALANVELTENRAEWFKS---KNGAQILSDVYNSNPTAAKQVLKTLAAM 375

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
               +GRRIAVLGDM E+G+ +   H  LA  ++   I  V+L G  ++ L+  L     
Sbjct: 376 P--VQGRRIAVLGDMLELGDAAPRLHASLATEINPAQIQEVYLIGTEMVHLQSKLLEQGY 433

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +IH +++  +  L   +++ L   D+V++K+S+     +++  + E 
Sbjct: 434 PATAIHYYHANQLGQLTATLEADLTASDMVLLKASHGLHLEQVLAAIKER 483


>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 475

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 159/468 (33%), Positives = 244/468 (52%), Gaps = 18/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG-------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           LWT  +LL A  GH       G          G+SID+R++A  + F A+ G + DGH  
Sbjct: 6   LWTGTELLTATGGHFRASPHPGAASCEGLRATGVSIDTRTLAAGDIFVALVGENSDGHAH 65

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+  GA +V+ + D           +  VDD L ALN +A  AR R    +IA+TGS
Sbjct: 66  ITRALDAGAAVVIAHRDPGVEDAR----ILLVDDTLSALNAMAAFARTRFAGRMIAVTGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTTTK+ML  AL +   T+  + SYNNH GVPLTLAR+P    F + E+GM++ GEI 
Sbjct: 122 VGKTTTKDMLRHALGACGPTHWAVASYNNHWGVPLTLARLPASAMFCVCEVGMNNPGEIA 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  +VRP +AVITTI  AHL +   +E IA  K+++   L + G   +  D +   +  
Sbjct: 182 PLAQMVRPDVAVITTITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTGMAIFA 241

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++   G + +++ G    +  ++  +++  +       + G S  V  H  G HMA N 
Sbjct: 242 TQARNHGAR-LWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ L     + AD+  A++ L+ F P  GRG      +  G  +L+DESYNA+ AS++A 
Sbjct: 301 LVALTAAYAVGADMACAVRGLADFRPGAGRGAI--TPILHGQASLLDESYNASVASIRAT 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL Q+      RRIAVLGDM E+G  ++  H  L   +   +   V+  G ++  L D
Sbjct: 359 LDVLGQVPA---RRRIAVLGDMLELGAFARDQHESLLPDVRE-HADLVFCCGPNMKYLFD 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            LP S    ++     L   +++++  GD ++VK S      ++++ L
Sbjct: 415 LLPPSRRGAWAPDAATLAPQVRAAMRAGDAILVKGSLGLKMRQVVDAL 462


>gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 466

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 136/475 (28%), Positives = 206/475 (43%), Gaps = 26/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V+G + IDSR +     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIASVVGGQTHDIPDPSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYAD 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+           + +P   V+DV  AL  LA     R  AT++A+TGS G
Sbjct: 60  QAVRAGAVAVLAQRP-------VGVPAIVVEDVQTALGALARHVVRRLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQVLRRKAPTVFTPGSLNNEIGLPLTALTATEETRFLVLEMGARGIGHISYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L   G   LN DD     + ++
Sbjct: 173 TDLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPAEGAAILNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG+S  AD +    +          +     + EV     G H   N L
Sbjct: 233 TKA----KVILFGESGEADVRAENVRLTDSGQPAFMLHTPSGASEVTMRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L         ALS          R          T+++++YNANP SM+AA+
Sbjct: 289 AAAAVAHELGMSATEIATALSEAGSLSRW--RMEVTERPDGVTIVNDAYNANPESMRAAL 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHV 411
              +  +     R  AVLG M E+G+ + + H  +  +    N+  +   G        +
Sbjct: 347 R--ALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQL 404

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A  +       VH S+        ++S L  GDVV+VK+S S G   +   LL+
Sbjct: 405 GAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLD 458


>gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 457

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 215/476 (45%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQTKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGAKLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
 gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
          Length = 466

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 200/473 (42%), Gaps = 25/473 (5%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+ T       I G SI        + +  DSR++ P + F A+KG  +D HDF+   V
Sbjct: 4   QPMTTLQQAAGWIAGASISGDATCSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+  +      + +P   V D    L +LA   R       +A+TGS GKTT
Sbjct: 64  ARGAAAVMVSRKV-----DVDVPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTT 118

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++        A  G+ NN IG+PLT+ R+       + ELGM+H GE  +L
Sbjct: 119 VKEMIAAIFAAAVGEGDRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGETIYL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKA 237
             + +P +AV+T     H      +E +A   A     L   G      D +S       
Sbjct: 179 AGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHASAIAALPADGVAVFPVDAESGGAYAAI 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A G + + SFG   +AD +       +    ++V    +   +  H +G H  +N L
Sbjct: 239 WRQAAGTRKVLSFGTDASADVRAT-VSLENGVQVLDVTAPDRRFTLRLHVLGVHNVRNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                      DV      ++ F   +G   R +         +ID++YNANP SM+AAI
Sbjct: 298 AATACALAAGVDVAAIQAGIAGFTAVKG---RLQVKHTPAGTVVIDDTYNANPDSMRAAI 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ VLGDM E+G+    FH ++        I  +W +G        A
Sbjct: 355 DVLAGFATP----RLLVLGDMGEVGDQGPMFHTEIGAYARERGIDALWATGELAPHAVQA 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-----VVVKSSNSCGFYRLINLLL 465
                   Y    + L   +++   +G V     V+VK S      R+++ L+
Sbjct: 411 YGGGAR--YFARAEDLAQALEAD-KEGTVANAAAVLVKGSRFMRMERMVDALV 460


>gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 457

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 215/476 (45%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIS 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQGSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG]
 gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF]
 gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
 gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
          Length = 473

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 206/474 (43%), Gaps = 27/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P+  V G +  DSR++     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                  G V      V +   L +P   VDDV  AL  LA     R    +IA+TGS G
Sbjct: 60  -------GAVAAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVERLGTAVIAMTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   LS    T    G+ NN IG+PLT  R+  +    + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTEETRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L ++G   LN DD     +  +
Sbjct: 173 TSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++ +A+ +               ++      EV     G H   N L
Sbjct: 233 TRA----RVLLFGEADDAEVRAENVTLTDTGRPRFLLRTPTGCGEVTLRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L    +     LS          R          T+++++YNA+P S++AA+
Sbjct: 289 AAAAVAHELGMPAEEIALGLSEARSLSRW--RMEVTERPDGVTIVNDAYNASPDSVRAAL 346

Query: 358 SVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L  +   +    GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             + A  +       VH S+T       ++  L  GDVV+VK+S + G  ++  
Sbjct: 407 LRMGAYNEGSWGEESVHVSDT-QAAIDLLRGELRPGDVVLVKASRAAGLEKVAQ 459


>gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
 gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
          Length = 473

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 136/478 (28%), Positives = 205/478 (42%), Gaps = 27/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    +  +   V G + IDSR +     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIADIVGGQPHDMPDRSLTVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   +  P   VDDV+ AL  LA A   R    ++A+TGS G
Sbjct: 60  -------AAVEAGAVAVLAARPVGCPAIVVDDVVAALGALACAVVERLGTAVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +    + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQLLERKAPTVWTPGSLNNEIGLPLTALTATAETRHLVLEMGARGVGHIHYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + A+
Sbjct: 173 AQLTPPTIGLVLNVGSAHLGEFGSREAIAQAKGELVEALPEDGVAVLNADDPLVRAMAAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++ +AD +    +   +      +       +V     G H   N L
Sbjct: 233 TQA----RVVLFGEAPDADVRGENVRLTDDGRPAFALHTPTGCSDVTLRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V    +ALSV         R          T+++++YNANP SMKAA+
Sbjct: 289 AAAAVAHELGMSVTEIAEALSVAGTLSRW--RMEVTERPDGVTVVNDAYNANPESMKAAL 346

Query: 358 SVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L+ +   +    GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALAAMGKAARAEGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 407 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEKVALALLE 463


>gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2866]
          Length = 457

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 214/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  VVV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VAQGAVTVVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
 gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
          Length = 464

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 214/471 (45%), Gaps = 19/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59
           M PL     L + ++   I   P   V  +  D+R  I     FFA+KG  ++GH F+  
Sbjct: 1   MIPL-EAGRLAEIMEARLIRGSPDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  KGA   VV+      +    + +  V DVL AL +LA   R  +   +I +TGS GK
Sbjct: 60  AGAKGALGAVVSRLPEQPLPPDFL-ILEVTDVLAALQRLAHYVRRATGPFLIGVTGSTGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L+   +  A  G+ NN IGVPLTL  +  + +F + E+ M   GEI  L+
Sbjct: 119 TTTKDLLAAVLAVRHRVLATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P+ AVIT I  AHL     +  IA AK EI + +   G   L  +  F E    + 
Sbjct: 179 ALAEPNAAVITNIGEAHLERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRC 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  +  FG+S  A  +L  +    E      V+      E      GYH A N   
Sbjct: 239 RG----KVIYFGESDKAQVRLLSYTSLGEKGCVFRVRTATGEEEYQLPLPGYHNALNCTA 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + I   L    +   +    F   +  G R      +GF T+I+++YNANPASM  A+ 
Sbjct: 295 VIAIARQLGFSPEEVQEG---FRRVQTSGMRLEIEHWRGF-TVINDAYNANPASMAGALE 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++      R++AVLGDM E+GE + + H ++ E  +      + + G     L    
Sbjct: 351 VLAEL--GKGRRKVAVLGDMLELGERTVAAHREVGEKAAAV-ADLLVVVGERARDLAAGA 407

Query: 419 PRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +      V    T++     + + L   +V++VK+S + G  R++  L 
Sbjct: 408 LSAGMPPDRVLAVATVEEAIRQLMNELEGDEVLLVKASRAMGLERVVQALR 458


>gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 455

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 213/475 (44%), Gaps = 38/475 (8%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + I  +    +N I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKIVDAQNNISDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A   LA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + RP
Sbjct: 117 MISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G++  G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + +  FG     D+Q         E+  +       +  V     G + A N ++  
Sbjct: 230 --NQMVIRFG-----DYQELNVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAA 282

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L    +  I+A       +    R           ++ + YNANP +M+  +   
Sbjct: 283 YVGKLLAVADEDIIEA---LESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I+ +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L      
Sbjct: 340 ANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHE 399

Query: 421 ---SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 400 FYPEGHVQFFQKNQQEDQFEDMGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
 gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
          Length = 459

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 217/470 (46%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    I   + P+  V+D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVASLWASDH--EITDQTHPLLVVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM    ++ FL+ LV 
Sbjct: 120 DMIASILSTQFNVTKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFDQLDFLSKLVN 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   ++IA AK EI  GL++ GT+  N D+    LL+ +   L 
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLT 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+  + +           Q    V  +    E     +G +   N L  + + 
Sbjct: 237 QRQ-MRFGRQLSNNLYATSVHDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL        +AL+     E R +  +    +    ++ + YN+NP + K  +  +++ 
Sbjct: 295 KILHITPAHMKQALANVELTENRAEWVK---GKNGEQILSDVYNSNPTAAKEVLKTIAET 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
               +GRRIAVLGDM E+G+ +   H  LAE +    I+ V+L G  +  LKD L     
Sbjct: 352 P--VDGRRIAVLGDMLELGDAAPKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               IH + +  +  L   + ++L   D+V++K+S+      ++  L  E
Sbjct: 410 PAEDIHHYAASDLQQLIADLTATLTGEDIVLLKASHGIHLEEVLTALKAE 459


>gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           dadantii Ech703]
 gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech703]
          Length = 453

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 209/465 (44%), Gaps = 24/465 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + +    +G      +  +S D+R +     F A++G ++D HD+   A      
Sbjct: 6   LQQLAEVLGARLVG--ENLTIGEVSTDTRKLTAGCLFVALRGENFDAHDYAADA-----V 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                  +V     + +P   V D   AL  LA   R +S A ++A+TGS GKT+ KEM 
Sbjct: 59  AGGAGALVVCKRLPIEVPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMT 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G++NN IGVPLTL R+  + DF + ELG +H+GEI + T LV+P  
Sbjct: 119 ASILRQCGNVLYTAGNFNNDIGVPLTLLRLAPEHDFAVIELGANHIGEIAYTTELVKPET 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  IA AHL  F  +  +A AK EIF+GL + G   +N D +     +    +L  KT
Sbjct: 179 ALVNNIAAAHLEGFGSLAGVAQAKGEIFDGLPENGVGIINADSNDIARWQ---PSLAGKT 235

Query: 247 IYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           ++ F      +ADF     +     +   +      ++V     G H   N L    +  
Sbjct: 236 LWRFSSQPASSADFLASDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAI 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A ++     LS      GR      A  +    L+D+SYNAN  SM AA  VL+++ 
Sbjct: 296 SVGASLEAVKLGLSRLQAVPGRLFPILLAPGK---RLLDDSYNANVGSMTAAAQVLAEMP 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G ++ V+GDM E+G+ +++ H  +     L  I  V   G     + +A   S   
Sbjct: 353 ----GYQVMVVGDMAELGQEAEACHRQVGAAAKLAGIDKVLSVGTLSALIGEA---SGVG 405

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            + +    L   +++ + + +   V++K S S    +++  L E 
Sbjct: 406 EHFDNKTALTARLRALVAEHNTITVLIKGSRSAAMEQVVRALQEH 450


>gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Haemophilus influenzae F3031]
 gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3031]
          Length = 457

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 215/476 (45%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
 gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
          Length = 454

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 217/468 (46%), Gaps = 23/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +    +G   G      ++ +S D+R+I     F A+ G  +D H+F   AV  GA
Sbjct: 5   TLSQIADITRGERFGD--DLLIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +      +++P   V D   AL + A       K   +AITGS GKTT KEM
Sbjct: 63  GALLVEKRL-----DVNVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +           L  K
Sbjct: 178 IALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGIAIVNLDSNGEAKW---DEVLADK 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + +F +S  +ADF        +   +  ++ +    + +E+    IG H   N +    
Sbjct: 235 KVITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A ++     L   +  +G   R           LID+SYNA+  +MKAA+ +L+
Sbjct: 295 IALQMGATLEEVRAGLKHLNKVKG---RVEVEALSEKIKLIDDSYNASVPAMKAAVDLLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + D L + 
Sbjct: 352 AFP----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISD-LCQG 406

Query: 422 IHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           IH   + E ++ +   +  ++ +   ++VK +N    + +   L E +
Sbjct: 407 IHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
 gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
          Length = 457

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 213/471 (45%), Gaps = 31/471 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I +      N +  DSR +   + F  +KG   DGHDFI  A + G
Sbjct: 8   TLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             + +       S  SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK+
Sbjct: 67  CVVTL-------SEVSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 120 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VIT    AHL  F   EEIA  K +I +G+E    + +  D    +LL +       
Sbjct: 180 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLLPSHVD---- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG  + AD Q+    +  +     V      +       G + A N ++   +  
Sbjct: 236 --LIRFG--EQADLQVTSLVESKDSLTFTVNFMDGDI--FLPVTGKYNATNAMVASYVGK 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +    AL+  +    R +  + A       ++ + YNANP +M+  +   + I 
Sbjct: 290 TLGVPDEAIKSALASLNLTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFTSIP 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 347 ANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFPI 406

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V++       +  + L   ++ SL   D ++ K SNS    +++  + +
Sbjct: 407 GKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEAIEK 457


>gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
 gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
          Length = 454

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 213/471 (45%), Gaps = 29/471 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +     G  +G      +  +S D+R+I     F A+ G  +D HDF   AV+ GA
Sbjct: 5   TLSQIADITGGELVGN--DLSIESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V         ++++P   V D   AL ++A       +   +AITGS GKTT KEM
Sbjct: 63  GALLVQK-----TLNVNVPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHVGEIEYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +           L  K
Sbjct: 178 IAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGEAKW---DQVLADK 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + +F ++  +ADF        +   +  ++ +    + +E+    IG H   N +    
Sbjct: 235 KVITFSQNNTDADFYASNIVLNAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I     A ++     L   +  +G   R           LID+SYNA+  +MKAA+ +LS
Sbjct: 295 IALQFGATLEEVRTGLKHLNKVKG---RVEVEELSDNIKLIDDSYNASVPAMKAAVDLLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + +     
Sbjct: 352 AFQ----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL---- 403

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
               + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 CDGIHFETHQEMIDYIKQHLDQAGPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 460

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 215/472 (45%), Gaps = 27/472 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +Q   +G      V  IS D+R       FFA+KG H+D H+++  AV +GA
Sbjct: 5   TTKQLATILQAELVGEA-NVVVENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV      +   +S+P   V D   AL +LA   + +     +A+TGS GKTT KEM
Sbjct: 64  NALVVER----ADTQISVPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKTTVKEM 119

Query: 126 LTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
               L S    ++     G++NN IGVPLTL R+     F + ELG +H GEI + T LV
Sbjct: 120 TASILQSAVGVEQVLFTQGNFNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAYTTGLV 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A++  +A AHL  F  +E +A+AK EI+ GL+  G   +N +  +       +  +
Sbjct: 180 QPNVALVNNVAAAHLEGFGSLEGVATAKGEIYRGLQPDGVAIINKEHDYRSTW---AQDI 236

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G   +  F  +   ADF           S  ++        +    +G H  +N L    
Sbjct: 237 GAHRVQYFAYQDNTADFYADNVIFHEAGSTFDLCTPQGKTTIHLPYLGEHNVKNALAASA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   + A +    + L V    +GR    +   N     L+D++YNAN  S+++AI VL 
Sbjct: 297 LAMNVGATLAQIKQGLEVRTQVKGRLYPVQPCDN---LLLLDDTYNANVDSLQSAIRVLQ 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +        RI V+GDM E+GE SQ  H  +AE      +  V+  G     +  A    
Sbjct: 354 KYDAF----RILVVGDMAELGENSQICHQQVAECAKAAKLERVYSFGSESAVISQAC--- 406

Query: 422 IHVHYSETM---DGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468
           +  H+++       L   +   L +    V++ K S       +IN L E F
Sbjct: 407 LGKHFTDKALLCRELTQLLSEKLKENQKIVLLAKGSRRMQMEDVINTLRENF 458


>gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
 gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
          Length = 453

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 204/469 (43%), Gaps = 24/469 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +N ++ D+R I P   F A+KG  +       H     A
Sbjct: 5   SLQALADVLSAELIGA--DCQINEVTTDTRQITPGCLFVALKGERF-----DAHDFAADA 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                   +V+    L  P   V D   AL +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 58  LAAGAGALLVSKRLPLGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +     G++NN IGVPLTL R+    DF + ELG +H+GEI + T L RP 
Sbjct: 118 TAAILRQCGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQ 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   + +   L  K
Sbjct: 178 TALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIINADNNDWPHWQTQ---LVGK 234

Query: 246 TIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T++ F    +   DF   +     + +   +     ++ +     G H   N L    + 
Sbjct: 235 TVWRFSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAAALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + + A ++     L       GR    +    Q    L+D+SYNAN  SM AA  VL+++
Sbjct: 295 TSVGASLEAVRVGLGQLQAVPGRLFPIQLKPGQ---LLLDDSYNANVGSMTAAAQVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V GDM E+G+ ++  H  + E   L  I  V   G     L  A   S  
Sbjct: 352 P----GYRVLVAGDMAELGDEAEECHRQVGEAARLAGIDKVLTVGSLSQLLSAA---SGQ 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
             + +    +   +   L +  V  V++K S S    +++  L E+ P 
Sbjct: 405 GEHFQDKAAVIARVAELLTEHTVITVLIKGSRSAAMEQVVRALQEKAPC 453


>gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
 gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
          Length = 427

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 209/441 (47%), Gaps = 22/441 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +ID+R + P   F A+KG  +DGHDF   A+  GAG ++V+  ++        P   V D
Sbjct: 2   TIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVEA-----PQLVVKD 56

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN IGVP
Sbjct: 57  TRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGVP 116

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A AK
Sbjct: 117 LTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAK 176

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSE 268
            EIF GL   GT  +N D + +   +   H    K ++ F     ++ DF     +   +
Sbjct: 177 GEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHGAEDIDFFASDVRITPK 233

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            ++  +     ++ +     G H   N L    +   + A +    + L+      GR  
Sbjct: 234 TTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVRQGLTQLQAVPGRLF 293

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
               +  +    L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+GE +   
Sbjct: 294 PIELSAGK---LLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVDC 346

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-- 446
           H  + +      +  V   G    AL +A     H    +  + L   +   L++  V  
Sbjct: 347 HRQVGDAAKQAGVDKVLSVGVLSQALSEASECGEH---FQDKNTLTARVSELLLEHPVIT 403

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V++K S S     ++  L E+
Sbjct: 404 VLIKGSRSAAMENVVRALQEK 424


>gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14]
          Length = 453

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 213/471 (45%), Gaps = 31/471 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I +      N +  DSR +   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             + +       S  SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  CVVTL-------SEVSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 116 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VIT    AHL  F   EEIA  K +I +G+E    + +  D    +LL +       
Sbjct: 176 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLLPSHVD---- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG  + AD Q+    +  +     V      +       G + A N ++   +  
Sbjct: 232 --LIRFG--EQADLQVTSLVESKDSLTFTVNFMDGDI--FLPVTGKYNATNAMVASYVGK 285

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +    AL+  +    R +  + A       ++ + YNANP +M+  +   + I 
Sbjct: 286 TLGVPDEAIKSALASLNLTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFTSIP 342

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 343 ANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFPI 402

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V++       +  + L   ++ SL   D ++ K SNS    +++  + +
Sbjct: 403 GKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEAIEK 453


>gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 457

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 215/476 (45%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 458

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 219/467 (46%), Gaps = 19/467 (4%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW   + +     +  G        G SIDSR+I P E FFA+KG   DGHD++  A+ 
Sbjct: 4   ALWRIAEFIHGTGDYRAG----AEALGYSIDSRTIKPGELFFAVKGERLDGHDYVQAALD 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   VV+ +  A        +   DD L AL++LA   R      ++ +TGS GKTTT
Sbjct: 60  RGAVAAVVSREFPARFNGTRN-LLVADDPLLALHRLAEMVRSLWHHPVVGVTGSAGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   L+S  K     G+ NNH G+PL L ++  + +  + E+GMSH GEI  L  L 
Sbjct: 119 KECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P+  V+T +AP HL NF  I  IA AK E+   L + G   LN DD F        H  
Sbjct: 179 QPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRGGCAVLNADDEFVSQFGRDFHG- 237

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              T+  FG  + ADF+    +   +  S  +++ + K        IG H   N L  + 
Sbjct: 238 ---TVLMFGVKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALAAVA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +++AI +L    P + RG+    A      T++++ YN+NP ++ A +  L+
Sbjct: 295 VGVHHGIAIESAIASLKTLKPADKRGEVVEIA----GATVVNDCYNSNPKALNAMVDALA 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-R 420
           ++      RRI + G+M E+G   +  H D  + +    + H+        A+ +     
Sbjct: 351 KMPAQ---RRIVIAGEMLELGPEGEHLHRDSGKHMKGI-VDHLVGVRGLAQAMVEGAKSA 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +  T +    ++ +++  GD V++K+S      R +    E+
Sbjct: 407 GVEAEFVATPEEAGDWLAANIRPGDAVLLKASRGVKLERALERWKEK 453


>gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 463

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 216/467 (46%), Gaps = 18/467 (3%)

Query: 6   TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++    +G  +G    P   V+G+S D+R++     +  +KG  +DGH F + AV+ 
Sbjct: 4   TLREITHWTRGKLVGGVSDPHLLVDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + N ++        IP+  V+D L AL +LA   R   +  ++ ITGS GKTTTK
Sbjct: 64  GAAAALWNREVPLP-KDPPIPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L++  + +   G+ NNHIG+PLTL  MP D +  + E+GM+H GEI  L+ +  
Sbjct: 123 DLTAAILATRYRVHRTQGNLNNHIGLPLTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAA 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++T I  AHL        IA AK EI EG+  TGT+ ++ D+        +  A  
Sbjct: 183 PDLALVTNIGEAHLEFLGSRGAIADAKLEIREGMPSTGTLIIDGDEPLLR----ERLAGE 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + +   G  ++ D ++   +                  E     +G H A N L+ +  
Sbjct: 239 ERPVIRVGFGESNDDRILDLELKGRAGIAFTSSATDTRFE--TGLMGKHNALNALLGIQA 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L                 EG G+R   +       ++D+SYNA+P +++AAI  L+ 
Sbjct: 297 ARLLGLTETGI---REGLKGAEGSGRRLETSTASNGMLVVDDSYNASPTAVRAAIDWLTS 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           +  + E  +  +LGDM E+G   ++ H ++        I  V+  G     + +    + 
Sbjct: 354 LEDYEE--KWVLLGDMLELGVQEEALHREVGSYAVQQGIPRVFTLGERARWISEGARAAA 411

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + V +  +++     ++     G  ++VK+S      R++  L +
Sbjct: 412 PDLPVTHFNSVEEAVNTLRRRGGPGVAMLVKASLMARLDRVVQQLTK 458


>gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 442

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 231/472 (48%), Gaps = 36/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  ++   + Q +   +   +    V G+S DSR +   + F A+   + DGHD++  A
Sbjct: 1   MN--YSVKKIGQILNATT--QIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+           IP   V D L AL +L    R +    ++AITGS GKT
Sbjct: 56  LTKGATAVLVDDRHQI---DSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M +  + S  KT+    ++NN IGVPLTL  MP D +  + ELGM   G++  L+ 
Sbjct: 113 TTKDMASAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDDTEVLVVELGMDRPGQLTTLSE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P IA+IT I  AH+  F   E IA AK EI +GL+  GT+ + YD+         ++
Sbjct: 173 LVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLL------TN 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG+       ++     S ++    Q    +       +G +   N L  +
Sbjct: 227 AQVKQNVQTFGQD------IKDINSSSSKTIFTYQ----NTRFAIPLLGRYNIMNALAAI 276

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L  ++  A +AL  F   + R ++   +       LI + YN+NP ++ A ++ L
Sbjct: 277 SAGILLHIELKNAAEALQHFDLTKNRTEQLTTSH---GVNLISDVYNSNPTAVAAVLATL 333

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
             I       +  VLGDM E+GE + S H  LAE +   N+  V+L G  +   L   L 
Sbjct: 334 KIIPATH---KYVVLGDMLELGEQAASLHACLAETVINANVDGVYLVGPLMNKYLYPILQ 390

Query: 420 R---SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           R   S H+H  ET  +  L   +Q+   +GDV+++K+S+      ++N L++
Sbjct: 391 RRFDSAHLHQYETDQLAELIKDLQTLGENGDVILLKASHGIHLENVVNALVK 442


>gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 455

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 213/475 (44%), Gaps = 38/475 (8%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    +N I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A   LA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + RP
Sbjct: 117 MISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G++  G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + +  FG     D+Q         E+  +       +  V     G + A N ++  
Sbjct: 230 --NQMVIRFG-----DYQELNVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAA 282

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L    +  I+A       +    R           ++ + YNANP +M+  +   
Sbjct: 283 YVGKLLAVADEDIIEA---LESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETF 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I+ +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L      
Sbjct: 340 ANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHE 399

Query: 421 ---SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 400 FYPEGHVQFFQKNQQEDQFEDMGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 454

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 214/473 (45%), Gaps = 36/473 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + +++ + ++    I       +  I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   SLYEVAKVVEAQNIISEFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V D L A  +LA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKEISGH------PYILVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ +V+P
Sbjct: 117 MIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIVQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HIAV+T I  AHL  F   E+IA  K +I +G+   G +    D   D +          
Sbjct: 177 HIAVVTLIGEAHLEFFGSREKIAQGKMQITDGMNSHGILIAPGDPIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG+++     +   ++          +  +++       G + A N ++   
Sbjct: 230 --NQMVIRFGENQE--IFVNSIEESKNSLRFTTNVLEQALT--LPLSGKYNAINAMLAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  ++A       +  G R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVAEEDILEA---LEHIQLTGNRTEWKKASNGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           QI P+  G++IA+L DM E+G  S   H  L + L+  +I H+   G  +  L     + 
Sbjct: 341 QIVPNQGGQKIALLADMKELGPSSVDLHCQLIQALNPDDIDHLIFYGQDIEPLAQLASQM 400

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                V +       +  + L+  +Q  L   D +++K S+S     ++N LL
Sbjct: 401 YPIGKVFFFKKTEAEDQFEDLYHHVQEILGSNDQILIKGSHSMHLEEIVNRLL 453


>gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 440

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 198/460 (43%), Gaps = 24/460 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +        +    VN I  DSR I   + F  +KG  Y GHDFI  A   G
Sbjct: 4   TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     ++  +          VDD L A   LA     ++K  +IA+TGS GKTTTK+
Sbjct: 63  AIISFSEKEVEQAH-------LLVDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +P
Sbjct: 116 MIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  AHL      E IA  K  I  GL   G +    D      +         
Sbjct: 176 ELALITLIGEAHLEFMGSRENIAKGKMGITAGL--HGELIAPADPIINAFIPEN------ 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I  FG     D  + K  +  E+   E     +S+       G + A N ++   +  
Sbjct: 228 QKISRFGLPGE-DLFITKLIEHKERLTFETNFLDESIT--IPVPGKYNATNAMLAAYVGL 284

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     KA       E    R     ++    L+ + YNANP +M+  +     I 
Sbjct: 285 HYGLTEAEINKA---LKEVELTRNRTEWKKSKNGADLLSDVYNANPTAMRLILETFQAIP 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +  GR+IAVL DM E+G  +   H ++ + +    I  V+L G  +  L D +     V
Sbjct: 342 KNENGRKIAVLADMLELGPTAAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKPV 400

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            Y   +D L   + + L   D V+ K SN      ++  L
Sbjct: 401 SYFTDLDLLTESLSADLKPADQVLFKGSNIMKLSEVVEKL 440


>gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2846]
          Length = 457

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 214/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Erwinia sp. Ejp617]
          Length = 452

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 206/465 (44%), Gaps = 23/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q   G   G      +  ++ D+R       F A+KG  +D HDF+L A+  G 
Sbjct: 5   TLQHIAQLTGGTLHG--SDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGC 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +    V D   AL +LA   R +S A I+A+TGS GKT+ KEM
Sbjct: 63  SGLLVSKRLP-----VDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +T    G+ NN IGVPLTL R+     + + ELG +H GEI + T LVRP 
Sbjct: 118 TAAILRECGETLYTAGNLNNDIGVPLTLLRLKPQHRYAVIELGANHQGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N +   +   +   H    K
Sbjct: 178 TALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINGESHDWPHWQQALHG---K 234

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T++ F   + ++DF        ++ +   +      ++V     G H   N L    +  
Sbjct: 235 TVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIANALAASALAL 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + LS      GR      + ++    L+D+SYNAN  SM AA  VL+ + 
Sbjct: 295 SVGAPLSAVRRGLSTLKAVPGRLFPLALSADK---LLLDDSYNANVGSMTAAAQVLAGMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   S   
Sbjct: 352 ----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGLLSHGISDA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
            +      L       L       ++VK S S    +++ +L E+
Sbjct: 405 EHFADKAALGARAIELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
 gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
          Length = 457

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 215/466 (46%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L+ A  G  I        + I IDSR       F  + G   D H F+      G 
Sbjct: 5   SVRELIAATGGVLIFGNEDAVFSNIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + + +   + S    +I    V+D + AL  L +  R +    ++ +TGSVGKTTT+EM
Sbjct: 65  RVAISSRKDIFSKPDFNI--VLVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +ALS + K +    ++N+ +GVP+T++R+  D + GI ELGMS  GE+  +  +V   
Sbjct: 123 TALALSDL-KVFKTPNNFNSQLGVPVTISRIT-DEEIGIIELGMSLFGEMERIAKIVGCD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AH+ N    E I S K  I +G++    +FLN D+        +     I 
Sbjct: 181 SAIITNIGTAHIENLHTKENIRSEKFHIMDGMKAGSVVFLNADNDMLSNPPKREGI--IY 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S   + + D+        +        +  +S++V  +  G H   N L+ L +   
Sbjct: 239 KFFSAKGNTDCDYYATDIVFHNAMPEFTAHICDRSIKVTLNVFGEHQVSNALVALAVAHH 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D+++A K LS F     R +           T+ID++YNA+P SMKA++S+L     
Sbjct: 299 YNLDIESASKHLSSFRGFSHRQELIELK----NLTVIDDTYNASPDSMKASLSILKDFRA 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV 424
               R+IAVL DM E+G     FH ++ E +S       V+  G     + +     I  
Sbjct: 355 ---RRKIAVLADMKELGADEVKFHREVGEFISENVKPDAVFSVGELAREIVN--CTDIFG 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL--EEF 468
              ++ + L  ++   L DGDV + K SNS   + +++ +   E+F
Sbjct: 410 KSFDSNEALEKYLLEYLEDGDVCLFKGSNSMRLFDVVDKIKNYEKF 455


>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
 gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
          Length = 452

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 208/463 (44%), Gaps = 25/463 (5%)

Query: 12  QAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           Q ++G      P       G+S D+R+I     F  + G  +DGHD++  A+ KGA   +
Sbjct: 6   QLLKGIITKNNPSAPLSFTGVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASL 65

Query: 70  VNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
             T +           +  V+D L AL  +A A   +++ T++A+TGS GKTT K++L  
Sbjct: 66  WATSVPVPESLKNEDRLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDLLYA 125

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+ +   Y   G+YNNHIG+PLT+  MP +    I E+GMS LGEI  L+ L  P IAV
Sbjct: 126 TLAPLGSIYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIAV 185

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  +HL      E IA AK EI  GL+ TG +FL+ D+        +        + 
Sbjct: 186 VTNIGESHLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLLSHYVKEG-------VQ 238

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G S      +   +   +     +             IG H  +N    + +   L  
Sbjct: 239 TVGFSSENKIVIHDLEAREDGYSFTID----EHSYDIKLIGEHNVKNAAYAVSVALHLGL 294

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   ++            R      Q    L++++YNA+P SMKAAI  L     +  
Sbjct: 295 SPEQVARS---LERVAISKMRLEKIEGQKGALLLNDAYNASPTSMKAAIKTLKAYPNYE- 350

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----V 424
            +++AVLGD+ E+G   ++ H  +A+ ++   I+   L G     + D + R       V
Sbjct: 351 -KKVAVLGDIYELGIDEEALHRSVADEITE-PITTAVLVGEKGQWIADEMKRRGSNIPFV 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + E  +    +I+  L    VV+ K+S       +++ L  E
Sbjct: 409 SFVE-KEEATDYIEGLLDGKTVVLFKASRGLELESIVDKLKRE 450


>gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
 gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
          Length = 473

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 145/478 (30%), Positives = 216/478 (45%), Gaps = 27/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G    I  P   V G + IDSR +AP   F A  G   DGHD+  
Sbjct: 1   MITL-SLAEIAEIVGGQPHDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   VDDV+GAL  LA AA  R   +++A+TGS G
Sbjct: 60  -------RAVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAAVERLGTSVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS+NN IG+PLT      + +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLQRHGPTVWTPGSFNNEIGLPLTALSATAETEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AHL  F   E IA AK E+ EGL + G   LN DD     + ++
Sbjct: 173 TELTPPRIGLVLNVGSAHLGEFGSREAIAQAKGEMVEGLPEDGCAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++  AD +  K +   +     E+       +V     G H   N L
Sbjct: 233 TKA----RVLLFGEAPEADVRGEKVRMTPDGRPVFELHTPTGCSDVTMRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V    +ALS          R          T+++++YNANP SM+AA+
Sbjct: 289 AAAAVAHELGMSVTEIAEALSEAGTLSRW--RMEVTERGDGVTVVNDAYNANPESMRAAL 346

Query: 358 SVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L+   Q      GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 407 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
 gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
          Length = 427

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/440 (28%), Positives = 202/440 (45%), Gaps = 22/440 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +ID+R +     F A+KG  +DGHDF   A             +V+    +  P   V D
Sbjct: 2   TIDTRKVTAGCLFVALKGERFDGHDFAEDA-----VAAGAGALLVSKRLLVGAPQLVVKD 56

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL + A   R +  A ++A+TGS GKT+ KEM+   L          G++NN IGVP
Sbjct: 57  TRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNNDIGVP 116

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A AK
Sbjct: 117 LTLLRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAKAK 176

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSE 268
            EIF GL   GT  +N D + +   +   H    K ++ F    +++ DF     +   +
Sbjct: 177 GEIFAGLPANGTAIINADSNDWPHWQEMLHN---KRVWYFSPRGAEDIDFYASDVRITPQ 233

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +     ++ +     G H   N L    +   + AD+    + L+      GR  
Sbjct: 234 ATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQGLAQLQAVPGRLF 293

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             + +  +    L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+ +   
Sbjct: 294 PIQLSAGK---LLLDDSYNANVGSMTAAAQVLAEMP----GYRVLVVGDMAELGDTAVDC 346

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-- 446
           H  + E      +  V   G     L DA   S +  + +  + L   +   L++  V  
Sbjct: 347 HRQVGEAARQAGVDKVLSVGSLSQTLSDA---SGNGEHFQDKNTLAARVSELLLEHPVIT 403

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           V++K S S     ++  L E
Sbjct: 404 VLIKGSRSAAMENVVRALQE 423


>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 453

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 121/461 (26%), Positives = 221/461 (47%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ GA
Sbjct: 4   TLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +++  +      +    V  V+D   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 64  TVAIIDEVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  LT++ RP
Sbjct: 124 LVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIARP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT +  +H+      E I   K  I +  ++  T+ +NY++   + +    H   I
Sbjct: 184 DMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKVNED-HEFKI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + I   G  K  D      +   E +  + V   G+      + +G H   N L+ + I 
Sbjct: 243 EKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRIS 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     L+ F     R +  +    +  FT+I++ YNA+P SMK+A+SVL   
Sbjct: 300 ENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSMKSALSVLKTY 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     R+IAVLGDM E+G+ ++S H  + +   +     +  +G      K    +   
Sbjct: 356 S---GSRKIAVLGDMGELGDHAKSSHEIVGKEA-IGKADIILTTGEFRDNYKSGFGKG-- 409

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  + L  ++ + + DGDV++VK+S S  F  ++  +
Sbjct: 410 AVSFNCKEDLQNYLCNLIKDGDVILVKASRSAKFEDIVKKI 450


>gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 457

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 214/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 455

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/474 (26%), Positives = 214/474 (45%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPNDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G++  G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +     +   ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGDHQE--LNVTDIREEKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+A       +    R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVADEDIIEA---LESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L       
Sbjct: 341 NIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEF 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 401 YPEGHVQFFQKNQQEDQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 466

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 199/464 (42%), Gaps = 17/464 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +    L  +    +          +  D+RS+ P + F A+KG H+D H+F+  A  +
Sbjct: 1   MMSLQQALGCLPSARLVGDGHVVPLRVHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +        +    +P   V D   AL +LA   R +    +IA+TGS GKTT  
Sbjct: 61  GAVAAIAQ----HGLREAGLPGLEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVT 116

Query: 124 EMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +M+   L + K   A    G+ NN IGVPLTL R+      G+ ELGM+H GEI +L HL
Sbjct: 117 QMIAAILRAWKPDAALATEGNLNNDIGVPLTLLRLRASHQVGVIELGMNHPGEIAYLAHL 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A++      HL   + +E +A     +   L+  G      DD +  + +     
Sbjct: 177 ARPSVALVNNAQREHLEFMATVEAVAQENGSVLASLDADGIAVFPADDVYTAVWR---RL 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + + +F  +  AD      +   +   +E Q     +E   H  G H  +N L    
Sbjct: 234 AGERQVLTFALAAPADVTASA-RWEGDGWQVEAQTPSGPIEFSLHIAGRHNVKNALAATA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   +      LS F P +GR +     L     TLID++YNANP SM+AAI VL+
Sbjct: 293 SALAAGVPLSFIAAGLSAFVPVKGRSRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLA 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++     G R+ V+GDM E+G     FH +     +   I  ++  G        A    
Sbjct: 353 ELP----GPRLLVMGDMAEVGSQGPQFHDEAGRNAAAQGIEKLFTLGEQSQGACAAFGEG 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            H      M  L   + + L     ++VK S      R++  ++
Sbjct: 409 CH---FSDMAELTAAVVAELPHVTSILVKGSRFMKMERIVQAVV 449


>gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 442

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 231/472 (48%), Gaps = 36/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  ++   + Q +   +   +    V G+S DSR +   + F A+   + DGHD++  A
Sbjct: 1   MN--YSVKKIGQILNATT--QIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+           IP   V D L AL +L    R +    ++AITGS GKT
Sbjct: 56  LTKGATAVLVDDRHQI---DSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M +  + S  KT+    ++NN IGVPLTL  MP D +  + ELGM  LG++  L+ 
Sbjct: 113 TTKDMASAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDDTEVLVVELGMDRLGQLTTLSE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P IA+IT I  AH+  F   E IA AK EI +GL+  GT+ + YD+         ++
Sbjct: 173 LVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLIPYDEPLL------TN 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG+       ++     S ++    Q    +       +G +   N L  +
Sbjct: 227 AQVKQNVQTFGQD------IKDINSSSSKTIFTYQ----NTRFAIPLLGRYNIMNALAAI 276

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L  ++  A +AL  F   + R ++   +       LI + YN+NP ++ A ++ L
Sbjct: 277 SAGILLHIELKNAAEALQHFDLTKNRTEQLTTSH---GVNLISDVYNSNPTAVAAVLATL 333

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
             I       +  VLGDM E+GE +   H  LAE +   N+  V+L G  +   L   L 
Sbjct: 334 KIIPATH---KYVVLGDMLELGEQAARLHACLAETVINANVDGVYLVGPLMNKYLYPILQ 390

Query: 420 R---SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           R   S H+H  ET  +  L   +Q+   +GDV+++K+S+      ++N L++
Sbjct: 391 RRFDSAHLHQYETDQLAELIKDLQTLGENGDVILLKASHGIHLENVVNALVK 442


>gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
 gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 459

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 216/470 (45%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    I   + P+  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVASLWASDH--EITDQTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVN 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   ++IA AK EI  GL++ GT+  N D+    LL+ +   L 
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+  + +           Q    V  +    E     +G +   N L  + + 
Sbjct: 237 QRQ-MRFGRQLSNNLYATSVHDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL        +AL+     E R +  +    +    ++ + YN+NP + K  +  +++ 
Sbjct: 295 KILHITPAHMKQALANVELTENRAEWVK---GKNGEQILSDVYNSNPTAAKEVLKTIAET 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
                GRRIAVLGDM E+G+ +   H  LAE +    I+ V+L G  +  LKD L     
Sbjct: 352 P--VAGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               IH + +  +  L   + ++L   D+V++K+S+      ++  L  E
Sbjct: 410 PAEDIHHYAASDLQQLIADLTATLTGEDIVLLKASHGIHLEEVLTALKAE 459


>gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 465

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 209/470 (44%), Gaps = 24/470 (5%)

Query: 5   WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L QA QG      +P+  +  I  DSR     +AF A+KG  +D HDF+     +
Sbjct: 14  WTAEQLQQATQGEWFRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +        I    V D   AL  L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQIAIVERPI-----DSDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  F + ELG +H GEI + ++LV
Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRPEHQFAVMELGANHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A I  I  AHL  F G + I  AK+EI+  +   GT  +  DD F   ++  +   
Sbjct: 189 QPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILPDGTAIVPSDDDFTATIRQNA--- 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   I SFG  +  D    + +   + +   +     S  V     G H  QN       
Sbjct: 246 GNHPILSFG--EGGDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  ++ L      +GR    +       +  ID++YNANP SM+AA  VL Q
Sbjct: 304 ALAIGIPLDDIVQGLEQAQGAKGRLNFIQ----HQNYLFIDDTYNANPTSMRAAAKVLLQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G ++ V+GD+ E+G+ S   H DL   L    + H+ + G    A +     + 
Sbjct: 360 ----QQGLKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVVVGEFAEAAQQGSGCAE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
           ++H   T      F+ + +          + K S       L+  L+E+ 
Sbjct: 416 NLHAFATQADALPFLINLVQTHQPQSMSFLFKGSRYTHMETLMADLMEKL 465


>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 453

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/461 (26%), Positives = 220/461 (47%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ GA
Sbjct: 4   TLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +++  +      +    V  V D   AL  LA   R +    ++ ITGS GKT+TK+
Sbjct: 64  TVAIIDEVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  LT++ RP
Sbjct: 124 LVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIARP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT +  +H+      E I   K  I +  ++  T+ +NY++   + +    H   I
Sbjct: 184 DMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKVNED-HEFKI 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + I   G  K  D      +   E +  + V   G+      + +G H   N L+ + I 
Sbjct: 243 EKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRIS 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     L+ F     R +  +    +  FT+I++ YNA+P SMK+A+SVL   
Sbjct: 300 ENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSMKSALSVLKTY 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     R+IAVLGDM E+G+ ++S H  + +   +     +  +G      K    +   
Sbjct: 356 S---GSRKIAVLGDMGELGDHAKSSHEIVGKEA-IGKADIILTTGEFRDNYKSGFGKG-- 409

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  + L  ++ + + DGDV++VK+S S  F  ++  +
Sbjct: 410 AVSFNCKEDLQNYLCNLIKDGDVILVKASRSAKFEDVVKKI 450


>gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus
           denitrificans PD1222]
 gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paracoccus denitrificans PD1222]
          Length = 461

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/462 (36%), Positives = 247/462 (53%), Gaps = 16/462 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D  +A  G +        V G+SID+R+I P + F A++    DGHDF+  A++K
Sbjct: 3   LWTSQDAAEATGGRATR---DFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+            P+  V DVL AL  L  A R R +  ++AITGSVGKT+TK
Sbjct: 59  GACAALVSRIPEGVAPD--APLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM  +AL+   + +A   SYNNH GVPLTLARMP D DF I E+GM+H GEI  L  L R
Sbjct: 117 EMARVALAGQGRVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLARLAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+A AHL  F  IE IA  K  IF GL + GT  +  D    +LL+  +    
Sbjct: 177 PHVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRDCADDAA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG+   A  +  K +     + +  ++ G++++ +    G H   N +  L  +
Sbjct: 237 A-IVIGFGQQGMA--RPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGMLAAL 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S   ADV  A K LS + P  GRG             LID++YN+NP S+ A ++ L+++
Sbjct: 294 SAAGADVAEAAKHLSDWRPPLGRGAVEDL----DGIRLIDDAYNSNPTSLSAGLATLARL 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    GRR+A+LGDM E+G    + H  +A   ++  +  V  +G  + AL +ALP+   
Sbjct: 350 T---GGRRVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQGRR 406

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             ++ET   L   +   +  GD+V+VK S S     +++ L 
Sbjct: 407 GMHAETAAELAGKVGELVASGDIVLVKGSKSSKVSTVVDALR 448


>gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 452

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 213/469 (45%), Gaps = 27/469 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + +++    QG   G+     ++ +S DSR+I  Q  F A+ G  +D H F+  A ++
Sbjct: 3   LMSLNEVANICQGRLNGV--NTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEEQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+ ++       S+P   V D   A   L      +  +  IA+TGS GKTT K
Sbjct: 61  GAVALLVSHEV-----DSSLPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKTTVK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L    +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T LVR
Sbjct: 116 EMLASILKRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFSVIELGANHQNEIAYTTQLVR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  IA AHL  F  IE +A AK EIFEGL++  T   N D +        S    
Sbjct: 176 PDVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENATAIYNLDSNGLPRW---SDLFE 232

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            KT+ SF +  N ADF     +      S   +     S+ V    IG H   N +    
Sbjct: 233 NKTVLSFSQENNQADFHASNIEINGLGASSFTLNTPVGSIVVSLTIIGKHNVSNAVAAAA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       +    + L      +G   R    +      +ID++YNA+  +MKAA+ +L 
Sbjct: 293 LAVQANCTLADIQQGLQSLENVKG---RVAVEVLPSGLKVIDDTYNASVPAMKAAVDLLG 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G R  VLG+M E+G+ S + H ++ E  + Y    V   G     + +     
Sbjct: 350 GF----NGSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQVITFGDDTKVISEL---- 401

Query: 422 IHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466
            +  + E+ + L  ++   L     +   V+VK +NS     ++  L E
Sbjct: 402 CNGRHFESRNELNAYLLQELQLIKHNEVTVLVKGANSSRMSEVVLALKE 450


>gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
 gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri]
 gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
          Length = 459

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 216/470 (45%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    I   + P+  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVASLWASDH--EITDQTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVN 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   ++IA AK EI  GL++ GT+  N D+    LL+ +   L 
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+  + +           Q    V  +    E     +G +   N L  + + 
Sbjct: 237 QRQ-MRFGRQLSNNLYATSVHDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL        +AL+     E R +  +    +    ++ + YN+NP + K  +  +++ 
Sbjct: 295 KILHITPAHMKQALANVELTENRAEWVK---GKNGEQILSDVYNSNPTAAKEVLKTIAET 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
                GRRIAVLGDM E+G+ +   H  LAE +    I+ V+L G  +  LKD L     
Sbjct: 352 P--VAGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               I+ + +  +  L   + ++L   D+V++K+S+      ++  L  E
Sbjct: 410 PAEDIYHYAASDLQQLIADLTTTLTGDDIVLLKASHGIHLEEVLTALKAE 459


>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
 gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 456

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 144/481 (29%), Positives = 218/481 (45%), Gaps = 36/481 (7%)

Query: 1   MNPLW-------TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M P W       T   + QA+        P   + GI  DSR IA    F A++G  +DG
Sbjct: 1   MQPHWRGKIVNTTLGAIAQALG--LDTTHPNLPITGICTDSRQIAAGNLFVALRGETFDG 58

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           H F+  A   GA  ++V   +     S  +P   V + L A  +L    R +  A +IA+
Sbjct: 59  HQFVDQAAAAGAIALMVEAPL-----SSDLPQLQVANTLSAYQRLGQWWRQQCPAKVIAV 113

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTKEM+   LS          ++NN IGVP TL ++     F + E+GM   G
Sbjct: 114 TGSVGKTTTKEMIAAVLSHYGAVLKTEANFNNEIGVPKTLLQLEPHHQFAVIEMGMRARG 173

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L+ + +P +AVIT +  AH+      E IA AK E+   +   GT  LN D     
Sbjct: 174 EIALLSQIAQPDVAVITNVGTAHIGRLGSREAIAQAKCELLAEMPPGGTAVLNADSPLL- 232

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L   +     +TI ++G        LR   Q  +     + + G++        G H A
Sbjct: 233 -LPTVAQVWSGRTI-TYGLEGG---TLRGIYQPPQ----TLHVGGRTYT--VPLAGAHHA 281

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  LG++  L  + D  +          GRG RYR         L+DE+YNA   SM
Sbjct: 282 LNFLAALGVLQALDVESDR-LPVQLTLELPSGRGGRYRLEP---DILLLDETYNAGLESM 337

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHV 411
            AA+ +L  +      R +AVLG M E+G  S SFH  +   ++  ++  +++   G   
Sbjct: 338 VAALHLLRSLPGQ---RHLAVLGPMRELGAFSLSFHEQVGATVAQLDLDGLFILDQGEEG 394

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            AL     + I      + + L  ++   L  GD ++ K+S++    R++N L + +P +
Sbjct: 395 AALAQGAGQ-IPTQQFGSHEELVEYLLRELQAGDRLLFKASHAVALDRVVNQLRQRWPKL 453

Query: 472 Q 472
           Q
Sbjct: 454 Q 454


>gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 473

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/471 (26%), Positives = 201/471 (42%), Gaps = 16/471 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 2   MMHATDAAAWMAGAHLAG-PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A++   ++ V  V D    L +LA   R +    ++A+TGS GKTT K
Sbjct: 61  GAAAVLVSRPPAATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVK 120

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +         A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 121 EMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAA 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKS 239
           + +P +A+I      H      +E +A   A +   L   G      D +   E      
Sbjct: 181 IAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPADGVAVYPRDAANGGEFAPVWQ 240

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A G + +  FG    A          +E   ++VQ  G+   +    +G H A+N L  
Sbjct: 241 AAAGSRRVLDFGIEAGA--VTGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAA 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      +   +AL  F P +GR +R +         +ID++YNANP SM+AAI  
Sbjct: 299 TACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGG---LVIDDTYNANPDSMRAAIDA 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +       R  VLGDM E+G    +FH ++        I  V  +G       DA  
Sbjct: 356 LATLPAP----RWLVLGDMGEVGSQGPAFHEEIGAYARTRGIDAVLATGELARHTVDAFG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 +  + + L      ++     V+VK S      R++  L+ + P 
Sbjct: 412 AG--AQHFASAEDLIEHGLGAIAPAATVLVKGSRFMRMERIVEALVLKDPV 460


>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
 gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
          Length = 457

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 211/449 (46%), Gaps = 23/449 (5%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I ++    ++GI+ DSR I P E F A++G  +DGHDF   AV KGA  ++V+  +    
Sbjct: 22  IDVIDDFLIDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAIALIVDHHISVKS 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IP   V D L A  ++A   R +    +IAITGSVGKTTTKE+++  LS+    + 
Sbjct: 82  TK-QIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVHK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IGVP TL  +    D+ + E+GM  L EI  L+ + RP I +IT +  AH+ 
Sbjct: 141 TKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIG 200

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E IA AK E+   +    T   N+D+S   LL   +  +      S+G  +  D 
Sbjct: 201 RLGSKEAIAQAKCELLAEMPPDATAIFNHDNS---LLVQTAKKVWKGETISYGL-EGGDI 256

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                          ++++G          G H A N L  + +   L  D    +    
Sbjct: 257 TGELLDNQ------TLRVEGMDFP--LPLPGRHNALNYLGAIAVAKCLKLD-CNVLMQGI 307

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
             +  +GR +RY+ +   G   L+DE+YNA   SMKAA+ +L +I      R +A+LG M
Sbjct: 308 SVNLPKGRSRRYQLS---GDILLLDETYNAGLESMKAALELLKEIPGQ---RHLAILGTM 361

Query: 379 CEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            E+GE S   H ++ E      I H  V +     +A+ D     +      T + L   
Sbjct: 362 KELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADGA-LGMVTECLPTQEELIKR 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  GD ++ K+SNS G  R++    
Sbjct: 421 LTEIVQPGDRLLFKASNSVGLNRVVEAFR 449


>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
 gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
          Length = 461

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 180/472 (38%), Positives = 256/472 (54%), Gaps = 13/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +L  A  G  +G  P   V GISID+RS+AP + F A+KG + DGH  I  A
Sbjct: 1   MSLLWTREELETATGGTFLGNAP-VSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA  V+ ++    +       +  V D +  L KLA+AAR R K  ++A+TGSVGKT
Sbjct: 60  LEKGAAAVLAHSAEGLTDPR----ILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L+    T+A   SYNNH GVPLTLAR+P +  F I E+GM+H GEI  L  
Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREAAFCISEIGMNHPGEILPLAK 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P +AVITTI  AHL +   ++ IA+ KA I   L   G   +  DD+        + 
Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITALPAGGIAIMP-DDAHGTPFFTAAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++  G +  +   L   +  ++ S  +V + GK+  V     G H+A+N ++ L
Sbjct: 235 VKAQAVLWPCGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARNAVVAL 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L ADV  A  AL+ F P +GRG   + A   G  TL+DESYNA+ AS++AA+ V+
Sbjct: 295 AACAALGADVAKAAAALAAFRPGKGRGALTKIA--GGAITLLDESYNASAASIRAALDVV 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             I      RRIAVLGDM E+GE S S H       +      V+  G ++  L DALP 
Sbjct: 353 RHIPAT---RRIAVLGDMRELGEFSISEHQA-LAAPTASAADLVFCCGSYMKTLFDALPP 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           S    ++E+   L   + ++L  GD V+VK S       +I  L    PA++
Sbjct: 409 SKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIAAL-NALPAVE 459


>gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
 gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
          Length = 457

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 214/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLVGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
 gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
          Length = 457

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 221/471 (46%), Gaps = 27/471 (5%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +     +  L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAADDTAIVNLESNGGDFW---NDVLA 236

Query: 244 IKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            K++ +F +S   AD+  +      +  +  ++Q    S+ V    IG H   N L    
Sbjct: 237 DKSVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     A +D     L+     +GR +  + + N     LID+SYNA+  +MKAA  +LS
Sbjct: 297 LSIQFGASLDEVKNGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +     
Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV---- 405

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  +  T   +   I+  L         ++VK +NS G  ++   L E F
Sbjct: 406 CNGTHFTTHQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456


>gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
 gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
          Length = 469

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 176/448 (39%), Positives = 252/448 (56%), Gaps = 10/448 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+R++ P + F A+K    DGHDF+  A+ KGAG  +V             
Sbjct: 21  DWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALVTHRPDGVAAD--A 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+DV  AL  L   AR R++A +IAITGSVGKT+TKEML   L+   +T+A + SY
Sbjct: 78  PLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTSTKEMLACMLADQGRTHAAVASY 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+A  HL  F  +
Sbjct: 138 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFEDV 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA  KA I EGLE  G   LN D    ++L A++  LG+   + FG+S   +++L   
Sbjct: 198 AGIAREKAAIMEGLEPGGVAVLNADIDEAQVLAAEAQGLGVAHQW-FGESAT-EYKLLST 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K   E +  EV+   + M++    +G H A N L  L  V+   ADV  A + LS++ P 
Sbjct: 256 KISGEATLAEVRCGPEQMQLTIQSLGAHFAMNALGALACVAAAGADVQRAAQVLSLWSPV 315

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-----PHGEGRRIAVLGDM 378
           +GRG R   A+  G   L+D+SYNANP SM AA++VL+           +GR+IA LGDM
Sbjct: 316 QGRGARVEVAMEGGKLLLLDDSYNANPTSMAAALAVLAATPDLGADAGVKGRKIAYLGDM 375

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G    + H  LA++ +L  I  +   G  +  L  ALP +    +  T   +   + 
Sbjct: 376 GELGPQEVALHAGLADLAALETIDTIHCIGPLMAHLHQALPAAQRGFHYATSADVLPDLP 435

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S L  GD+V+ K S S G  ++++ + +
Sbjct: 436 SQLGCGDIVLAKGSLSAGLSKIVDGIRD 463


>gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 481

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 252/475 (53%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A  G +          G+SIDSR++ P + F A+K    DGH F+  A
Sbjct: 1   MTPLWTSDEASAATGGRATRAFSA---TGVSIDSRTLRPGDLFVALKDQR-DGHAFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   +V+            P+  V DVL AL  L  AAR RS+A +I +TGSVGKT
Sbjct: 57  LANGAAAALVSRIPDGLTDG--APLLLVPDVLEALAALGRAARARSRARVIGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML  AL      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRAALRGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+APAHL  F  +  IA  KA I EGLE  G   L  D     +L A++ 
Sbjct: 175 LARPHLALITTVAPAHLEAFDSMTAIAEEKAAILEGLEPGGLAILPADLEVTPVLAARAS 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+    +FG+S  AD++L   +   E +        ++        G H A N L  L
Sbjct: 235 ALGV-PAMTFGQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAVL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAI 357
                L  D+      L ++ P  GRG R R AL   ++  F LID+++NANPAS+ A++
Sbjct: 294 AAAEALGLDLTITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G    + H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
 gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
          Length = 453

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 213/464 (45%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L++  +G  I      +++G +IDSR I   + F  IKG   DGH FI  A +KG 
Sbjct: 5   SLEQLVKITEGRLIQTGTTDWISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                 T+ +       I V  V+  L A+  LA   R R    +IA+TGS GKTTTK++
Sbjct: 65  STSFTETEALDFPEG--ISVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   KT    G++NN  G+P TL  +  + +  + E+GM HL +IR     VRPH
Sbjct: 123 IASVLSQKYKTLKTQGNFNNEYGIPQTLFNLQPEHEIAVIEMGMDHLDDIRKSIGEVRPH 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VIT I  AH+      + I +AK EIFE +       LN DD +   +K       + 
Sbjct: 183 ISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDIALLNGDDVYLNKIKEDEEPFSVV 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G+    D  L+  +  S    +     G+     + GI  H   N L  + +   
Sbjct: 243 RVGIKGE----DLSLKAEQVDSSAQGIRFVADGEHFHFAYPGI--HNVYNCLTAIWLGRY 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L  F P   R    R        T+I++SYNANP +MKAA+ +L  +  
Sbjct: 297 YQMTHEEIQRGLDAFKPSGNRMDIVRVRE----ATVINDSYNANPDAMKAALDMLWDMGK 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
               RR+AVLGDM EMGE+++S H+++    +      +   G    A       S+   
Sbjct: 353 SC--RRLAVLGDMLEMGEMAESGHLEIGAYAAE-KADVLIAVGPESKAYIKGAGASLADE 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              ++   +G    ++  +  GDV+++K+S      + + ++ E
Sbjct: 410 RCFWTADAEGAGKLLRKLMAPGDVILIKASRGVHLEKTLKMIQE 453


>gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
 gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
          Length = 478

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 201/473 (42%), Gaps = 16/473 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +    D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V
Sbjct: 5   TVMMHATDAAAWMAGAHLAG-PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+    A++   ++ V  V D    L +LA   R +    ++A+TGS GKTT
Sbjct: 64  ARGAAAVLVSRPPAATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTT 123

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM++   +         A  G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 124 VKEMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237
             + +P +A+I      H      +E +A   A +   L   G      D +   E  + 
Sbjct: 184 AAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYARV 243

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A G + +  FG    A          ++   +EVQ  G+   +    +G H A+N L
Sbjct: 244 WKAAAGSRRVLDFGMDAGA--VTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNAL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                        +   +AL  F P +GR +R +         +ID++YNANP SM+AAI
Sbjct: 302 AATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGG---LVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L  +       R  VLGDM E+G    +FH ++        I  V  +G       DA
Sbjct: 359 DALVTLPAP----RWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                   +  + + L      ++     V+VK S      R++  L+ + P 
Sbjct: 415 FGPG--AQHFASAEDLIEHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDPV 465


>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 472

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 201/446 (45%), Gaps = 18/446 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           + IDSR++     F A++G H DGH +I     KGA   +V      S G+ + P     
Sbjct: 33  VVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAWYESEGAPAAPEGCGF 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D +  L +LA   R      +IA+ GS GKTTTKEM+   L +        G+ NN
Sbjct: 93  LVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAVLGTGFTVQTSKGNLNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++       + E+G++H GE+  L  L RP   ++T I   HL     +E 
Sbjct: 153 HLGVPLTLLQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNIGHEHLEFLLNLEG 212

Query: 206 IASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRK 262
           +A+ +  +F  L +  GT F+N DD +      K  A G+   +++G + ++    Q R 
Sbjct: 213 VAAEETRLFRYLQQHGGTCFVNADDLWL-----KEAAEGLTGSFTYGTADDSQIACQARH 267

Query: 263 WKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S +   E    G S  +  H IG H   N L    + +     ++   K L    
Sbjct: 268 IAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAAVGTYFGLSLEQIKKGLEALR 327

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P  G  +      + G   LI+++YNAN  SM+ AI  L  I     G++IAVLGDM E+
Sbjct: 328 PSPGWKRLE--VQDAGGVVLINDTYNANSDSMRLAIDALVDIP--CSGKKIAVLGDMLEL 383

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           GE     H      +    I  ++  G H            H HY E    L   ++  +
Sbjct: 384 GEAGIVEHEKTGRYIQQSPIDLLFTYGRHARLYGIEAGARCHGHY-ENRQKLLDELKMVV 442

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
             GD V+ K+S S     ++  L++E
Sbjct: 443 QPGDAVLFKASRSMRLELVVEALIKE 468


>gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
 gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
          Length = 457

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 214/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
          Length = 480

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 143/496 (28%), Positives = 214/496 (43%), Gaps = 44/496 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L + + G  IG      V  +S DSR +     FFA+KG  +D HD+++ A
Sbjct: 1   MISLQT-KKLAEILNGRLIG-DETVTVETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV          +++P   V D   AL  LA   +       +AITGS GKT
Sbjct: 59  VEQGNTAVVVEHAC-----EVNVPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYA------------------------CIGSYNNHIGVPLTLARM 156
           T KEM    L    +  A                          G++NN IGVPLTL R+
Sbjct: 114 TVKEMTASILQQTARKSAVKNTEVFFTGSNHGKANFADAVLFTQGNFNNDIGVPLTLLRL 173

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +  F + ELG +H GEI + T LVRP +A+I  +A AHL  F  ++ +A AK EI+ G
Sbjct: 174 QPEHRFAVIELGANHAGEIDYTTKLVRPDVALINNVAAAHLEGFGSLDGVARAKGEIYRG 233

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQ 275
           L + G   +N D  +  L   +     ++   SF   +  AD+     +     S   + 
Sbjct: 234 LSEDGIAVVNSDCHYLSLWDKEIAGHRMQ---SFSATNPEADYWAENIRMTESGSAFTLH 290

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               S+++    +G H   N L    +   + A++      L    P +GR        N
Sbjct: 291 SPDGSIDISLPYLGAHNIDNALAATALAMNVGAELCDVKAGLEQRSPVKGRLFPIEPCNN 350

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                L+D++YNAN  S+K+AI VL     + E  RI  +GDM E+GE S+  H  +A  
Sbjct: 351 ---LLLLDDTYNANVDSLKSAIGVLK----NYEAFRILAVGDMAELGENSRECHRQVANY 403

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSN 453
               N+  V   G     +  A   +     +   + L   I   L +    V++ K S 
Sbjct: 404 AKSANLDCVACFGAETAVIAQACNGTHFTDKTVMANYLAAVIDEKLKNNQRVVLLAKGSR 463

Query: 454 SCGFYRLINLLLEEFP 469
           S     +I +L  +F 
Sbjct: 464 SQKMEDVIAILKRKFE 479


>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 217/471 (46%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P +   +L + +QGHSIG      +  I IDSR++ P   F A+KG  +DGH F   A
Sbjct: 1   MIPTF-LKELAEVLQGHSIGD--NVPITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++        +  + +P   V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 58  QSHGAVGLLSEC-----LLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + DF + ELG S  G+I     
Sbjct: 113 SVKEMTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP   +IT +A AHLS F  ++ +A AK EI   L  TGT  ++     +   K+   
Sbjct: 173 LSRPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHATSHDWPKWKS--- 229

Query: 241 ALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               K ++ FG  K K  DF      +    +   +     S ++     G H   N L 
Sbjct: 230 VFRGKRLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLPLPGLHNVLNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + AD+    KALS   P  GR         +    L+D++YNAN  SM AA  
Sbjct: 290 ASALAISVGADLSAISKALSELKPVPGRAFPMILGPGK---LLLDDTYNANVGSMIAATE 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           ++S +     G R+ V+GDM E+GE S++ H  +  ++    I  V+  G+    + D++
Sbjct: 347 MMSNMP----GYRVMVVGDMAELGEQSKNCHKKIGNIMRQAGIDKVFSLGYLSKFMTDSI 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
               H  +    + L   ++  L +     ++VK S S    +L+  + E+
Sbjct: 403 E---HGEHFTQREKLIERVRDLLSEHSEISILVKGSRSSAMEKLVLDIKEQ 450


>gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
 gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
          Length = 478

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 200/473 (42%), Gaps = 16/473 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +    D    + G  +   P   +  ++ DSR++ P + F A+ G  +D HDF+   V
Sbjct: 5   TVMMRATDAAAWMTGAHLAG-PDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+    A++   ++ V  V D    L +LA   R +    ++A+TGS GKTT
Sbjct: 64  ARGAAAVLVSRAPAATLDVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTT 123

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM++   +         A  G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 124 VKEMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237
             + +P +A+I      H      +E +A   A +   L   G      D +   E    
Sbjct: 184 AAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYAPV 243

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A G + +  FG    A          ++   +EVQ  G+   +    +G H A+N L
Sbjct: 244 WKAAAGSRRVLDFGMDAGA--VTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNAL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                        +   +AL  F P +GR +R +         +ID++YNANP SM+AAI
Sbjct: 302 AATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGG---LVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L  +       R  VLGDM E+G    +FH ++        I  V  +G       DA
Sbjct: 359 DALVTLPAP----RWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                   +  + + L      ++     V+VK S      R++  L+ + P 
Sbjct: 415 FGPG--AQHFASAEDLIEHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDPV 465


>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 482

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 129/493 (26%), Positives = 211/493 (42%), Gaps = 40/493 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +   ++G   G   Q   +G  IDSR +   E FFA+ G   DGHD+I  A QK
Sbjct: 1   MWDSQRIADLVRGELTG-DSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQK 59

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA +V+   + +     + +P    +  V+  L A+  LA A R    A ++AITGS GK
Sbjct: 60  GASVVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   +T+  + + NN +G+P+T+ +   + +  I E+GM  LG+I FL 
Sbjct: 120 TTTKDMVAAVLSEKYRTHKNLENQNNELGLPMTILKATENTEVLILEMGMRGLGQIAFLC 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P I VIT I   H+      E IA AK E+ E L +TG+  LN +D +      K 
Sbjct: 180 DIACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWS----VKQ 235

Query: 240 HALGIKTIYSFGKS---KNADFQLRKWKQCSE-QSWMEVQLQGK--------------SM 281
                   + +G        D + R         +  + ++                 S+
Sbjct: 236 AEHDSHRTFFYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSV 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H   + L  L +  +L   ++            E    R       G  TL
Sbjct: 296 TVRLPLPGEHNVLDALAALSVGVLLNVSLEE---GCRGLAAMELSRMRLELQPGPGGSTL 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + YNANP SMKA++ VL +         +A+LG+M E+G+  ++ H ++ + ++   I
Sbjct: 353 ISDVYNANPTSMKASLQVLKERGGES---TLAILGEMYELGQSCRAGHYEVGQTVADLGI 409

Query: 402 SHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFL---FIQSSLVDGDVVVVKSSNS 454
           S +   G     +             +H     +G       + + L  G  V++K+S  
Sbjct: 410 SELITVGPLAEEIARGALEKGLSPQRIHSFPEREGAIKKARELLAGLNQGTWVLIKASRG 469

Query: 455 CGFYRLINLLLEE 467
                +   L ++
Sbjct: 470 MKMEEVTRALRKD 482


>gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 456

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 215/472 (45%), Gaps = 36/472 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + H++ + ++   S+       +N I  DSR I   + F  +KG   DGHDFI  A +KG
Sbjct: 4   SLHEIAKVVEAQNSLSEFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +         P   V+D L A   LA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AAATFSEHPIEGK------PYLLVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP + +  + E+G  H+G+I  L+ + +P
Sbjct: 117 MIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +A AHL  F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 RIAVLTIVAEAHLEFFGSREKIAQGKMQIVDGMDSHGILLAPGDPIIDPYL--------- 227

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG+ +     ++  K+          +  +++       G + A N ++   
Sbjct: 228 PDNQMVIRFGEGEE--IFVKDIKEDKNSLTFTTNVLDQAVT--LPLSGKYNATNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  ++AL      + R +  + A       ++ + YNANP +M+  +   S
Sbjct: 284 VGKLLAVSDEDIVEALESVQLTKNRTEWKKAA---NGADILSDVYNANPTAMQLILETFS 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  + +G++IAVL DM E+G  S S H  L   LS   I  +   G  +  L     + 
Sbjct: 341 NIPNNPDGKKIAVLADMKELGPDSVSLHSKLIMSLSPEKIDTLIFYGQDIQELSQLASQM 400

Query: 422 I---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               HV++       +  + L    +  L   D +++K SNS    RL+  L
Sbjct: 401 FPIGHVYFFKKDEQLDQFEELCQLTKEKLGQNDQILLKGSNSMHLDRLVEYL 452


>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 463

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 223/468 (47%), Gaps = 16/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WT   ++ A++G  +   P   V+ IS D+RS+   + F A+ G  +DGHDFI  AV+KG
Sbjct: 3   WTVAQIVDAVRGRLMAGDPALPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKG 62

Query: 65  AGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VVV +     ++ + S+ V  VDD L AL +LA   R R    +  ITGS GKT+TK
Sbjct: 63  AAVVVVASGRGEGAVRAGSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L          G+ NN IGVPLTL  M    +  + E+G++  GE+  L  +  
Sbjct: 123 ELLAAILEHRHGILKNRGNLNNQIGVPLTLLTMDPTHEAAVIEMGINVPGEMARLVEIAG 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT I PAHL     ++ I   K  +++ L+  G   +N DD   + L+A S  L 
Sbjct: 183 PTLGLITNIQPAHLEGLGSLDGILKEKGRLWDALDAEGIAVVNLDD---QRLRAYSKRLA 239

Query: 244 IKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +T+    +   A  ++  + +     +   + L  +++ VV   +G H  +N L     
Sbjct: 240 ARTVTCSVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAA 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +    +     L+ + P    G+R +    +    LID++YNANP SM AA+     
Sbjct: 300 AWAMGEPGEAISAGLAAYRPV---GQRMQIRHMEDGRVLIDDTYNANPESMLAAV---RA 353

Query: 363 ISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 G+  IAVLG+M E+G  S + H +L   +    +S +   G     + +    +
Sbjct: 354 ALAVCRGKPCIAVLGEMRELGADSAALHRELGRRIGAMGLSGLITLGELAARIGEGAVEA 413

Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   ++++ D +  +++   +D   ++VK S      R++  +L
Sbjct: 414 GMKPAACRHAKSHDQVVEWLRERKIDASWILVKGSRGMTMERVVEGML 461


>gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
 gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
          Length = 457

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 221/471 (46%), Gaps = 27/471 (5%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I  +  AK EIF+GL    T  +N + +  +     +  L 
Sbjct: 180 PQVALVNNVAAAHLEGFGSINGVKQAKGEIFQGLAAGDTAIVNLESNGGDFW---NDVLA 236

Query: 244 IKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            K++ +F +S   AD+  +  +   +  +  ++Q    S+ V    IG H   N L    
Sbjct: 237 DKSVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +     A +D     L+     +GR +  + + N     LID+SYNA+  +MKAA  +LS
Sbjct: 297 LSIQFGASLDEVKNGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +     
Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV---- 405

Query: 422 IHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  +  T   +   I+  L         ++VK +NS G  ++   L E F
Sbjct: 406 CNGTHFTTHQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456


>gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 451

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 211/472 (44%), Gaps = 29/472 (6%)

Query: 4   LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    DL Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV
Sbjct: 1   MMTLRLADLAQVLDARLIG--EDGEITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  ++V  ++     SL+IP   V D L  L  +    R R    ++AITGS GKTT
Sbjct: 59  AAGASALLVEREL-----SLAIPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM T  L    +  A  G++NN +GVPLTL R+     F + ELG +H GEI + T L
Sbjct: 114 VKEMTTAILRHEGEVLATAGNFNNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP  A+I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D +F+   +A    
Sbjct: 174 ARPDAALINNVAAAHLEGFGSLEGVFHAKSEIFEGLSEQGTAIVNADSAFWPKWQAA--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            GI   +S  + +N  F  R      +  +   +      + +     G H   N L   
Sbjct: 231 -GIHCAFSI-EDQNQPFHARGIALNGQGCAEFVMVTPNGELSLTLAIPGRHNVANALAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L A + +    L    P +GR    R     G  TL+D++YNA+  S+ A I  L
Sbjct: 289 AGCLALGASLASVKAGLEQMAPVKGRFCVQRW----GGLTLVDDTYNASVESVLAGIDAL 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G ++ V GDM E+GE S   H  +    S   +  V   G       DA   
Sbjct: 345 TAM----GGYKVLVFGDMKELGEESAEQHARVGRHASECGLDAVLTVGEQSRHTADAAA- 399

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
                + +    LF  +   +       ++VK +       ++ ++++   +
Sbjct: 400 ---GRHFDNKASLFEVLAQMINTHQEISILVKGARGSRMEDIVKMVVDRQES 448


>gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM 10]
 gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis FV-1]
 gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis CO92]
 gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10]
 gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CO92]
 gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D106004]
 gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D182038]
 gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 458

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 206/463 (44%), Gaps = 21/463 (4%)

Query: 10  LLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L   +    I    +     +  ++ID+R +     F A+KG  +DGHDF   A+  GAG
Sbjct: 9   LASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAG 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+  ++        P   V D   AL + A   R +  A I+A+TGS GKT+ KEM 
Sbjct: 69  ALLVSKRLLVGG-----PQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMA 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G++NN IGVPLTL R+  + DF + ELG +H+GEI + T L RP  
Sbjct: 124 AAILRQCGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIELGANHVGEIAYTTDLSRPES 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H    K 
Sbjct: 184 ALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---KR 240

Query: 247 IYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           ++ F     ++ DF     +   + +   +     ++ +     G H   N L    +  
Sbjct: 241 VWRFSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANALAAAALAM 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+    + L+      GR      A  Q    L+D+SYNAN  SM AA  VL+++ 
Sbjct: 301 SVGADLAAVRQGLAQLQAVPGRLFPVPLAEGQ---LLLDDSYNANVGSMIAAAQVLAEMP 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+GE +   H  + E   L  +  V   G     L  A     H 
Sbjct: 358 ----GYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVLSVGTLSQILSSASGNGEHF 413

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               T+      + +       V++K S S     ++  L E+
Sbjct: 414 QDQNTLSTRVNALLNEY-PVITVLIKGSRSAAMENVVRALQEK 455


>gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
 gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
          Length = 452

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 216/472 (45%), Gaps = 28/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +    ++ +A  G  +G      ++ +S DSR I  +  F A+ G  +D HDFI   
Sbjct: 1   MITML-LSEIAKACDGRLVGA--DCQISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++V+ ++       ++P   V D   AL  +A            A+TGS GKT
Sbjct: 58  QEQGATALLVSKEV-----DTTLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L+   +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T 
Sbjct: 113 TVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P++A++  IA AHL  F  IE +A AK EIFEGL++ G    N D +        S 
Sbjct: 173 LAQPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLQENGIAIYNLDSNGLPKW---SS 229

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               K + SF     +ADF     +  +  +   ++     +++V    IG H   N + 
Sbjct: 230 LFEGKQVVSFAMDDSSADFYASNIEVNAIGEPSFQLNTPKGNIQVSLGIIGKHNVANAVA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +     A ++   + L      +G   R           +ID++YNA+  +MKAA+ 
Sbjct: 290 AAALAIQAHASLNDIQQGLQELGSVKG---RVAVETLASGLKVIDDTYNASVPAMKAAVD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L       +G+R  VLG+M E+GE S + H ++ E  + Y    V   G     + +  
Sbjct: 347 LLGGF----KGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISEL- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466
               +  + ET   L  ++   L     +   V+VK +NS     +++ L E
Sbjct: 402 ---CNGRHFETRSDLNAYLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 450


>gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 464

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/473 (25%), Positives = 212/473 (44%), Gaps = 17/473 (3%)

Query: 1   MNPLW--TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ +   +   +++ +    I     +  + G+ IDSR +     +  I G + +GH ++
Sbjct: 1   MSKMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A++ GA  V+             + V  V+D   AL +LA A R +    ++ ITGS 
Sbjct: 61  QQAIEHGAKAVLWERKEQNPPHE--VVVILVEDTTVALQQLAKAYRDQLNLKVVGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L+    T   +G++NN IGVPLTL  +  + +  + E+GM +L E+ F
Sbjct: 119 GKTSTKDILASVLAKHFITQKTLGNFNNEIGVPLTLLSLSENCEAAVVEMGMENLNELSF 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT++VRP IA+I+ +  AHL N   +E IA AK EI EGL + G +  N D         
Sbjct: 179 LTNIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGLNEHGLLIYNGDQQLLRDAAV 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    G   I +FGK  + D  +    Q  +     +             IG H A N  
Sbjct: 239 EKQIPGYIKIRTFGKEAHNDVIVSHVHQLEDGLRFSI--NEDDWVYHLDMIGKHQAMNAT 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L    +   +  +       R +  +         ++++SY +NP S  AA+
Sbjct: 297 AAWIAAKALGLSEEEIAEGFASVEKTGLRNELVKV----NQCLILNDSYKSNPQSALAAV 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             + +        ++AVLGDM E+GE S   H  L + +S Y+I  V   G     +   
Sbjct: 353 DTMEEFDIPY---KLAVLGDMLELGETSDMIHYTLGKDISRYHIQEVLTIGDMACYIAQG 409

Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              ++    V +    + L  +++  +    +++VK S       ++++L++E
Sbjct: 410 ARDNMEHTLVRHFTDKEALISYLKPYMHKECMLLVKGSRGMKLDEVVDVLVQE 462


>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
 gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 217/461 (47%), Gaps = 13/461 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A+ G  +    +  +  ISIDSR++   + F  + G   D H F+  A + GA 
Sbjct: 6   IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +       G     +  V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  ASLTSEHDTCPEGITGA-LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  +T+    ++N+ +GVP+T++ +    + G+ ELGMS  GE+  +  + R   
Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEVIADIARVDT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+ N    E I   K  I +G++K GT+FLN D+     ++AK    G +T
Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD---GCET 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + +G   N  ++         +   ++      + VV   +G H   N L  L +    
Sbjct: 242 SF-YGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A +AL  F   + R + Y     +G  T+ID++YNA+P SMKA I VL+ ++  
Sbjct: 301 HVPLADAAEALKTFDGFKNRQQIYE----KGNITIIDDTYNASPDSMKAGIRVLASLTDR 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              RRIAVL DM E+GE +  FH ++   L    +  V   G     +   +   +    
Sbjct: 357 K--RRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYGALAKEIARGVEGKVKTTV 414

Query: 427 S--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              E  + +  +++  L +GD V+ K SNS          +
Sbjct: 415 FEEEQKEEMTEYLEKLLREGDAVLFKGSNSMKLGETAARFI 455


>gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 473

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 211/478 (44%), Gaps = 27/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G S  I  P   V G + IDSR +AP   F A  G   DGHD+  
Sbjct: 1   MITL-SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   V+DV+GAL  LA A   R   T++ +TGS G
Sbjct: 60  -------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+P+T        +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAATEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + ++
Sbjct: 173 ADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG++  AD +  K +   +     E+       +V     G H   N L
Sbjct: 233 TRA----RVLLFGEAPEADVRGEKVRMTPDGRPAFELHTPTGCSDVTMRLYGEHHVSNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V    +ALS          R          T+++++YNANP SM+AA+
Sbjct: 289 AAAAVAHELGMSVTEIAEALSEAGTLSRW--RMEVTERGDGVTIVNDAYNANPESMRAAL 346

Query: 358 SVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
             L+   Q      GR  AVLG M E+G+ S + H  +  +    N+S +   G      
Sbjct: 347 RALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASW 406

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 407 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
 gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
          Length = 507

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 125/511 (24%), Positives = 211/511 (41%), Gaps = 53/511 (10%)

Query: 4   LWTFH--DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + TFH  ++     G  I       +  IS +S+       F  I G   D HDFI  A 
Sbjct: 1   MATFHVNEIATITGGTIIKGNNDRTIFKISTNSKVGDSDTLFVPIVGERVDAHDFIADAY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++G  + + + D +A      +    V+  + AL +L    R  S   II ITGSVGKTT
Sbjct: 61  RQGIRVTLTSKDEIAEGTEDMV-YIKVNHTVEALQRLGEYHRDHSNVPIIGITGSVGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+  A S+       IG+ N+ +G+P  +  +    + GI E+GMS  GE+  +  +
Sbjct: 120 TKEMIAAAFSTRSNVLKTIGNMNSQVGLPQMMLMLEDTHEVGIIEMGMSEFGEMERIAKV 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKA 237
            +P +AV+T I  +H+      E I   K  I     +   + LN DD      ++  + 
Sbjct: 180 AKPKMAVVTNIGVSHIGQLKTQENIRKEKLNIVNYFTEDSILLLNGDDQLLLEIYDEYRK 239

Query: 238 KSHALGIKT--------------------IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            + ++  KT                    +Y+FG + +        K   E +      +
Sbjct: 240 DNSSVKEKTQNNGSVDLSEMTRRSLNKASVYTFGTNPDCTIYADNIKTDGESTTFTFHYK 299

Query: 278 GKSME-----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             + E     +    +G H   N L  +     L  D   A + L  + P   RG+  + 
Sbjct: 300 NGTKEELVDDITLSVLGKHNILNALAAIFFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKV 359

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T+ID++YNA+P SMK AI V+  +      ++  V  D+ E+G++S+  H ++
Sbjct: 360 ----NGITIIDDTYNASPDSMKGAIHVIMDMPKEH--KKFIVFADILELGDISKKCHYEV 413

Query: 393 AEVLSLYN------------ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFI 437
            E L+               I  V   G     + D +  +   I+       +  F +I
Sbjct: 414 GEYLAKQCKIEKACGKESTFIDEVITIGEEAKYILDGVRENGEDINTKSFMEREEAFKYI 473

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +++L   DV+++K S       ++  L EE 
Sbjct: 474 KTNLTKRDVILLKGSRGMKLDLIVERLKEEL 504


>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 461

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 216/471 (45%), Gaps = 21/471 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++L+ ++  ++G+  +     +   +DSR  A    F+ IKG  +D H F+    + 
Sbjct: 7   TIGEMLEILETEAVGVPARTLKRKVNLCMDSRESAKGVVFWPIKGARFDAHQFVSQMEKD 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + VVN   +     +  P   V+D   AL KLA   +   K   +AITGS GKTTTK
Sbjct: 67  GALMSVVNQTAIDPNFKMYAP---VEDTTKALLKLAKGYQRLFKLKKVAITGSNGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    LS    T+A  G++NNHIGVP+TL ++    +  + E+G S   EIR L+    
Sbjct: 124 EMTKAVLSMKYNTHATKGNFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRPLSLATE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  +HL     ++ + + K  I  GL++ GT+ +N DD     +KA  H   
Sbjct: 184 PDIAVITNIGASHLERLGDLDGVFNEKINITAGLKENGTLIVNADDERLCKVKATKHY-- 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG  +    +  K K       +           V +  G H   + L  + + 
Sbjct: 242 --KVVTFGVRRGV-VKPEKLKWTEN---LCADFYVGRTHFVLNVPGDHNLYDALAAIAVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L        KAL+ F     R +      N   F +I + YNANP+S K A+  L  +
Sbjct: 296 QALRIPKGDIAKALAGFTSTSMRME----IKNANGFKVISDCYNANPSSTKMALQTLGNM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
               EG+RIAVLGDM E+G+ S + H  +  ++   N   +   G       +       
Sbjct: 352 R--VEGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLLAVGKDAKKYVEGAKSRGM 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +V Y ET+  +   +   + +GD+++VK S      +++  LL   P  +
Sbjct: 410 KNVQYFETVPEVISMLGEVVAEGDILLVKGSRGMHMEQVVEALLHMVPVFK 460


>gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP
           32953]
 gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 206/463 (44%), Gaps = 21/463 (4%)

Query: 10  LLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L   +    I    +     +  ++ID+R +     F A+KG  +DGHDF   A+  GAG
Sbjct: 9   LASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAG 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+  ++        P   V D   AL + A   R +  A I+A+TGS GKT+ KEM 
Sbjct: 69  ALLVSKRLLVGG-----PQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMA 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G++NN IGVPLTL R+  + DF + ELG +H+GEI + T L RP  
Sbjct: 124 AAILRQCGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIELGANHVGEIAYTTDLSRPES 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H    K 
Sbjct: 184 ALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---KR 240

Query: 247 IYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           ++ F     ++ DF     +   + +   +     ++ +     G H   N L    +  
Sbjct: 241 VWRFSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANALAAAALAM 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+    + L+      GR      A  +    L+D+SYNAN  SM AA  VL+++ 
Sbjct: 301 SVGADLAAVRQGLAQLQAVPGRLFPVPLAEGK---LLLDDSYNANVGSMIAAAQVLAEMP 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+GE +   H  + E   L  +  V   G     L  A     H 
Sbjct: 358 ----GYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVLSVGTLSQILSSASGNGEHF 413

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               T+      + +       V++K S S     ++  L E+
Sbjct: 414 QDQNTLSTRVNALLNEY-PVITVLIKGSRSAAMENVVRALQEK 455


>gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
 gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
          Length = 452

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 215/473 (45%), Gaps = 27/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L   +    +G      +N +S D+R+I P   F A+ G  +D HDF L+A
Sbjct: 1   MISLM-LSQLADELDAQLVGN--DAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+            P   V D   AL +L        +   +AITGS GKT
Sbjct: 58  VEAGATALLVSR-----ALDTQTPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   + +  +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL       +N D +  E  +    
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAPGSAAIVNLDSNGGEHWQE--- 229

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  K + +F      AD+   K    +   +  E+       EV    IG H   N L 
Sbjct: 230 VLADKQVKTFSVLDSTADYFAHKITMNNSGEASFELLSPMGGFEVKLGIIGQHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L A ++     L      +G   R          TLID+SYNA+  +MKAA  
Sbjct: 290 ATALAFELGASIEMVQSGLRHLAKVKG---RVESIALTEKITLIDDSYNASVPAMKAAAD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +LS      +G R  +LG+M E+G+ S + H  + E  + +   HV   G    A+    
Sbjct: 347 LLSSF----KGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTYGADARAI---- 398

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468
            +     + +T D +  FI+  L   D    ++VK +NS G  ++   L E +
Sbjct: 399 SQQCQGTHFDTHDAMIEFIKQQLPLHDCAQTLLVKGANSAGMSKIAAALKEMY 451


>gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 467

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 203/466 (43%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++   I G           + G+S DSR+I P E +  + G  +DG  FI     KG
Sbjct: 13  TLSEIAHMINGEISDEKFSAIKIKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKECEDKG 72

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +++     +  ++SIP   V D   AL  LA A R      +I ITGS GKTTTK+
Sbjct: 73  AEAFIIDDPTKIN-KTVSIPYVRVADTKKALQDLATAYRKELSCKVIGITGSNGKTTTKD 131

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS   KT    G+ NN IGVP T+  +  D +  I ELG  + G+I   + +V+P
Sbjct: 132 LLYKILSEKYKTQKTCGNLNNEIGVPKTVLSLDPDTEVAIIELGTDNFGDISLTSRMVKP 191

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIA+IT I  AHL N      I  AK EI EG+E  G    N DD     +K +     I
Sbjct: 192 HIAMITNIGDAHLHNLKTRSGILKAKLEILEGMEDDGIFIYNIDDP---TMKEEIPTYDI 248

Query: 245 K-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           K  + SFG+S  ADF++    + S  S +    +    E     +G H   N    + I 
Sbjct: 249 KQKVLSFGRSDKADFKI--VFEKSPTSIIRFSHENDHFE--VPLMGEHNIYNAAAVVMIS 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  + +            + R +   C      F ++D+SY +NP S+ A +      
Sbjct: 305 EMLGLNKEMIDAGFMEVKSSQNRTELLEC----DGFDILDDSYKSNPQSLLAGLET--TY 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
              G  R+I  L DM E+GE     H ++ + L    I +    G     + +A   +  
Sbjct: 359 MLEGYKRKIVCLADMLELGENEVDLHREVGKKLDSKKIDYALFYGPLAKQMYEASLENFP 418

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                Y    D L   ++S ++   ++ VK S+      +I  +  
Sbjct: 419 ADRTFYFNHKDELIEKLKSLVIGASLIFVKGSHGMHMEEIIESIKN 464


>gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychromonas ingrahamii 37]
 gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychromonas ingrahamii 37]
          Length = 489

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 221/483 (45%), Gaps = 31/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ +A  G  I    P+   N IS D+R I   + F A++G  YD H F+  
Sbjct: 14  MISL-TLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEK 72

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVG 118
           AVQ+GAG ++++    +      +P   V D   AL  LA   R +  +    AITGS G
Sbjct: 73  AVQQGAGALLIDQKKRSD-----LPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNG 127

Query: 119 KTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           KTTTKE+L+  L     + +   A  G++NN IG+PLTL R+     + + ELG +HLGE
Sbjct: 128 KTTTKELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVELGANHLGE 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +   L +P +A+I  + PAHL  F  ++ +A AK EI+  L  TG   +N D  F   
Sbjct: 188 IAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNLDSDFASE 247

Query: 235 LKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQ-SWMEVQL----QGKSMEVVHHGI 288
              +   L  + +++F K S+ A          S   +   + +      +++ +  +  
Sbjct: 248 YLTQLKKLN-RQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAISIQLNLA 306

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    +   L  ++      L +    EG   R          TLID++YNA
Sbjct: 307 GLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEG---RVDSRELNKLVTLIDDTYNA 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NPAS+K AI +L Q +       + VLGDM E+G+ S+  H  + E  +   I  +   G
Sbjct: 364 NPASVKVAIDLLQQYASSH----LLVLGDMAELGDFSEHEHFLIGEYAAQKGIQTLITFG 419

Query: 409 FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINL 463
                   A  ++      +      L  ++++ L++      ++VK S       ++N 
Sbjct: 420 KLTFKTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNF 479

Query: 464 LLE 466
           + +
Sbjct: 480 IKQ 482


>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 208/472 (44%), Gaps = 23/472 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
            KGA  +V+    V  +         V D L AL  LA   R R +   ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPV---VLVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L   ++     G+ NN +G+PL+L  +     F + E+GM+  GEI  +  
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A++ 
Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAART- 266

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   ++G+++NA  +    +   E      + +      V    +G H   N L  
Sbjct: 267 ---GQQRITYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAA 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + +             +         KR +         LID++YNANP+SM AA++ 
Sbjct: 324 AALATAAGVSPAEIA---AGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALAT 380

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  +    + R +AVLGDM E+GE S + H  +   ++  +  ++   G     + +A  
Sbjct: 381 VHNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVEAAR 438

Query: 420 ----RSIHVHYSETMDGLFLFIQS-----SLVDGDVVVVKSSNSCGFYRLIN 462
                +         + +   ++       L   D+V+ K S       +I+
Sbjct: 439 YRGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490


>gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
 gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
          Length = 456

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 217/472 (45%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF+++   ++    +   P      +  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VDDVL AL +LA     + K  + A+TGS GKTTTK+
Sbjct: 63  AVATLSEKELDD------YPSILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + ++T I  AHL  F    EIA  K +I  G+++ G + +  D    + L ++      
Sbjct: 177 KVGIVTLIGEAHLEFFKSRHEIAKGKMQIANGMKEGGLLIVPADKIINDFLPSQ------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  +  D  L K ++  +    E      +++      G + A N ++   +  
Sbjct: 231 QNVVRFGPDE--DIFLTKLEERKDSLTFETNFLDNAID--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D   KA +          R      +    ++ + YNANP +M+  +   S I 
Sbjct: 287 KEGVTQDKIQKAFATLELTR---NRTEWKKAKNGADILSDVYNANPTAMRLILETFSTIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPR 420
            + +GR++AVL DM E+G  S+  H  +   L+   +S ++L G  + AL    K+  P 
Sbjct: 344 FNEKGRKLAVLADMKELGADSKQMHGAMITSLNPEILSEIFLYGEDMAALFAYAKEIFPP 403

Query: 421 SIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               ++ +  +      L   ++ +L   D +++K SNS     L+  L  E
Sbjct: 404 GKAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEELENE 455


>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
 gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
          Length = 455

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 217/461 (47%), Gaps = 13/461 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A+ G  +    +  +  ISIDSR++   + F  + G   D H F+  A + GA 
Sbjct: 6   IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +       G     +  V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  ASLTSEHDTCPEGITGA-LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  +T+    ++N+ +GVP+T++ +    + G+ ELGMS  GE+  +  + R   
Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEVIADIARVDT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+ N    E I   K  I +G++K GT+FLN D+     ++AK    G +T
Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD---GCET 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + +G   N  ++         +   ++      + VV   +G H   N L  L +    
Sbjct: 242 SF-YGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A +AL  F   + R + Y     +G  T+ID++YNA+P SMKA I VL+ ++  
Sbjct: 301 HVPLADAAEALKTFDGFKNRQQIYE----KGNITIIDDTYNASPDSMKAGIRVLASLTDR 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              RRIAVL DM E+GE +  FH ++   L    +  V   G     +   +   +    
Sbjct: 357 K--RRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYGALAKEIARGVEGKVKTTV 414

Query: 427 S--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              E  + +  +++  L +GD V+ K SNS          +
Sbjct: 415 FEEEQKEEMTEYLEKLLREGDAVLFKGSNSMKLGETAARFI 455


>gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
 gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
          Length = 478

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 169/473 (35%), Positives = 252/473 (53%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G +IG       +G+SID+R++AP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAKEAESATGGRAIG---DWSCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V    V    + + P+  V+DVL AL  L  AAR R++A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVT--HVPEGVAENAPLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML    +   + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  + +
Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++TT+A  HL  F+ + EIA  KA +F+GL+  G   +N D     +L AK+    
Sbjct: 177 PDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +  FG+     ++L   +   + + +     G  +       G H A N L  L   
Sbjct: 237 LREVE-FGEH-GYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAAISV 359
             + AD+  A  +L  + P +GRG R    L+         LID+SYNANP SM AA+ V
Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEV 354

Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L        I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  + +
Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMKS 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L D LP      ++ET   L   + S L  GDVV+ K S S     +++ + +
Sbjct: 415 LYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLSMKLGLIVDAIRK 467


>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
 gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
          Length = 444

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 217/470 (46%), Gaps = 35/470 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  ++   +Q +S G      + G++ DSR +   + F A+   H DGH +I  A+  GA
Sbjct: 4   SLKNIASVLQANSQG---DADITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGA 59

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V+     +     IP   V D L AL +L    R      +IAITGS GKTTTK+M
Sbjct: 60  VAVLVDDQHAITPD---IPAIIVPDTLLALQRLGQYRREMVNPKVIAITGSNGKTTTKDM 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS+  KT+    +YNN IGVP+TL  MP D +  + ELGM   G++  L+HLV P 
Sbjct: 117 TAAILSTKFKTFKTPENYNNEIGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+  F   + IA AK EI +GL+  G + + +D+        KS      
Sbjct: 177 IAIITMIGEAHIEFFQTRDNIARAKLEITQGLKSDGILLVPFDEPLLTQAAVKSDRQ--- 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               FG+  +A       +  +  +        +  +     +G +   N L  +    +
Sbjct: 234 ---YFGEKVSA------IQALATVTTFTF----EQQKFAIPVMGRYNVMNALAAISAGKL 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L+ D+  A  AL  F   + R +R   +       LI + YNANP ++ A +S L  +  
Sbjct: 281 LSIDLKHAALALKNFDLTKNRTERLVTSQ---GVVLISDVYNANPTAVAAVLSTLKSLPA 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419
               R+  VLGDM E+G  +   H +L   +   ++  V+L G         L +     
Sbjct: 338 ---RRKYVVLGDMLELGTQANHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKMGV 394

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             +H++ ++ +  L   + +    GDV+++K+S+      ++  L  E P
Sbjct: 395 ERVHLYQTDQLKQLASDLLAISQPGDVILLKASHGIHLEEVVQQLTSEQP 444


>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
 gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
          Length = 455

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 212/462 (45%), Gaps = 21/462 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +   L+  + G  IG        G+SIDSRS++  + F A+ GP +DGHD++     KG
Sbjct: 5   MSLSQLVPLLNGQQIGA--DAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADVKAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  +    +  + +P   V D   AL +L    R      ++AITGS GKTT KE
Sbjct: 63  AVAALVERE----VADVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSGKTTVKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   L RP
Sbjct: 119 MLASILRTRGLVHATRGNLNNDLGAPLTLLEIAAEHSAAVIELGASRIGEIRYTVGLTRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VI     AH+  F G E+I  AK EI EGL + G   LN DD  F   KA++   G 
Sbjct: 179 QVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFATWKARA---GA 235

Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + SF +S   ADF      + +      ++   G+  +V  + +G H   N L     
Sbjct: 236 HKVISFARSDARADFHASAIGRDARGCPSFQLHGAGEVAQVQLNVLGEHNVSNALAAAAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +      L+   P +G   R    +      +ID+SYNANP SM AAI +L+ 
Sbjct: 296 AHAVGLSLAGIAAGLAAVQPVKG---RTVAQIAPSGVRVIDDSYNANPTSMCAAIDILAG 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++    +A     
Sbjct: 353 FS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMKHAVEAF--GA 405

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  +  T   L   + +       +++K S S     ++  L
Sbjct: 406 NGRHFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
 gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
          Length = 457

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/476 (28%), Positives = 212/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE   + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENFLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+         E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVSGKHFTDKVEMVDFLVPLIETQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 453

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 215/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF+  AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
 gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
          Length = 453

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 215/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF+  AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
 gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
          Length = 454

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 218/468 (46%), Gaps = 23/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +    +G   G      ++ +S D+R+I     F A+ G  +D H+F   AV  GA
Sbjct: 5   TLSQIANITRGELFGD--DLLIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +      +++P   V D   AL +LA       +   +AITGS GKTT KEM
Sbjct: 63  GALLVQKHL-----DVNVPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  I+ +  AK EI++GL       +N D S     ++    L  K
Sbjct: 178 IALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGSIAIVNLDSSGETKWES---VLADK 234

Query: 246 TIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + +F +S + AD+        +   +   + +    + +E+    IG H   N +    
Sbjct: 235 EVITFSQSNSAADYYASNIVMNAAGEASFNLHIAASSQEIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A ++     L   +  +G   R           LID+SYNA+  +MKAA+ +L+
Sbjct: 295 IALQMGATLEEVRAGLKHLNKVKG---RVEVEALSEKIKLIDDSYNASVPAMKAAVDLLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + + L + 
Sbjct: 352 AFP----GQRWLILGNMAELGEESLALHRQVGEYAAPQKFEHVLTYGADAKVISE-LCQG 406

Query: 422 IHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           IH   + E ++ +   +  ++ +   ++VK +N    + +   L E +
Sbjct: 407 IHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
 gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
          Length = 464

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 210/475 (44%), Gaps = 31/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q +    +G   +  V  IS D+R    +  FFA+KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLNAKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++      +++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVERELA-----VNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               L  +     +     G+ NN +GVPLTL R+  +  F + ELG +H+GEI + T +
Sbjct: 119 TAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIAYTTEI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    ++   + +   
Sbjct: 179 AQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKAGGKAIVNLA-HYYPEWQKEIGD 237

Query: 242 LGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +++    G+ K+  ADF     +     S   +      +E+    +G H   N L  
Sbjct: 238 HELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSNALAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + AD+      L      +GR        N      ID+SYNAN  SMK+A+SV
Sbjct: 298 TALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKSAVSV 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q        RI V+GDM E+G+ S + H ++A+ +    +  V   G     +     
Sbjct: 355 LKQYPAF----RIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS---- 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                H+      +  F+   ++         V++ K S S     +I  L   F
Sbjct: 407 -GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEDVIASLCRSF 460


>gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
 gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
          Length = 453

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 212/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIGA--DRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++             V D   AL +L      + K   +AITGS GKTT KEM+
Sbjct: 64  ALLVEHEL-----DADCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  IE +  AK EI++GL +     +N D +  E  K     L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSIEGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKT---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      ++V    IG H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+     +G   R      +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIAHGLAHLSKVKG---RVDLTHLRDDITLIDDSYNASVPAMKAAVDLLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + ++   V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arsenophonus nasoniae]
          Length = 452

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 214/465 (46%), Gaps = 21/465 (4%)

Query: 10  LLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +    QG    I  Q     ++N ++ +SR    +  F A+KG H+DGH F   A   GA
Sbjct: 1   MATVTQGTLQQIDEQQAGSLWLNAVTTNSRQRPIKGLFIALKGKHFDGHHFAEQATIAGA 60

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V   +      +  P   V+D   A+ KLA   R +SKA +I +TGS GKT+ KEM
Sbjct: 61  SALLVERPLT-----IHCPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEM 115

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+    T    G++NN IGVPLTL R+  + ++ + E+G +H+GEI + T++VRP 
Sbjct: 116 VAAILTQSGMTLFTEGNFNNDIGVPLTLFRLTAEHEYAVIEMGANHIGEIAYTTNMVRPD 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +  AHL  F  +  +A AK EIF+GL + GT  +N     ++  ++        
Sbjct: 176 SVLVNNLFAAHLEGFGSLTGVAKAKGEIFQGLAEQGTAVINLASHDWKNWQSYFKQQQTL 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S  K + ADF        S  S  E+        +     G H   N L    +   
Sbjct: 236 WRFSLTKQQQADFYAENIAIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALAMS 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A ++     L+   P  GR      A  +    ++D++YNAN  SM AA  VLSQ+  
Sbjct: 296 VGATLEQVSLGLAHVQPVSGRLYPIYLAPGK---LILDDTYNANTGSMIAAADVLSQMP- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G RI V+GDM E+G+ ++  H ++        +  V   G   + +     +S    
Sbjct: 352 ---GYRILVVGDMGELGDKTEKCHQEVGVATRQMKLDRVLSVGQQSVIISQ---QSGCGE 405

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
           +  +   L   +   + + +   V+VK S S     +++ L E F
Sbjct: 406 HFASKKELIAKLIPLIKEHETVSVLVKGSRSTAMEEVVHALQECF 450


>gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
 gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
          Length = 449

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 215/468 (45%), Gaps = 27/468 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +A  G  +G      ++ +S DSR I  Q  F A+ G  +D HDFI    ++G
Sbjct: 1   MLLSEIAKACDGRLVGA--DCQISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V+ ++       ++P   V D   AL  +A            A+TGS GKTT KE
Sbjct: 59  ATALLVSKEV-----DTTLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L+   +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T L +P
Sbjct: 114 MLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++A++  IA AHL  F  IE +A AK EIFEGL++ G    N D +        S     
Sbjct: 174 NVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENGIAIYNLDSNGLPKW---SSLFEG 230

Query: 245 KTIYSFGKSKN-ADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           K + SF  + + ADF     +  +  +   ++     S++V    IG H   N +    +
Sbjct: 231 KQVVSFAMNDSCADFYASNIEVNAIGEPSFQLNTPKGSIQVSLGIIGKHNVANAVAAAAL 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                + ++   + L      +G   R           +ID++YNA+  +MKAA+ +L  
Sbjct: 291 AIQANSSLNDIQQGLQELGSVKG---RVAVETLASGLKVIDDTYNASVPAMKAAVELLGG 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G+R  VLG+M E+GE S + H ++ E  + Y    V   G     + +      
Sbjct: 348 F----KGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISEL----C 399

Query: 423 HVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466
           +  + ET   L  ++   L     +   V+VK +NS     +++ L E
Sbjct: 400 NGRHFETRSDLNAYLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 447


>gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
 gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
          Length = 455

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 125/474 (26%), Positives = 213/474 (44%), Gaps = 36/474 (7%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +  +    ++ I  DSR I   + F  +KG   +GH+FI  A Q G
Sbjct: 4   TLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-NGHEFIDLAFQNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP
Sbjct: 117 MIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
            IAV+T +  AHL  F   ++IA  K +I +G++  G +    D   D +          
Sbjct: 177 RIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPE------- 229

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +     +   ++  +       +    +       G + A N ++   
Sbjct: 230 --NQMVIRFGDHQE--LNVTDIREEKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+A       +    R           ++ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVADEDIIEA---LESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I+ +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L       
Sbjct: 341 NIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEF 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 401 YPEGHVQFFQKNQQEDQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
 gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
          Length = 449

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 155/460 (33%), Positives = 244/460 (53%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L  A+    I I      N + ++S+ +   + F A+KG   DGHD+ L A+ K
Sbjct: 2   IWNSKTLSFALG---ITISNSINCNEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAAAVIVSKQVEITDKD---KILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L I L      +A  G++NN++G+ + LA M  D+++ I ELGM+H GEIR L  +++
Sbjct: 115 EALKILLQHDSLVFAGRGNFNNYLGLLINLASMADDMEYAILELGMNHKGEIRELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IAVIT I+ AHL  F+ +EEIA AK EIFE   K     +N D + +  + +    L 
Sbjct: 175 PNIAVITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADTNCYSKILSILKNLY 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  +Y+FG   N   QL  ++    Q  ++ ++  KS+E+    I  H A+N  + L I+
Sbjct: 235 IDRVYNFGILHNTHAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+  +P +GRG      +N     +I + YNA+P SM+AA+  L Q+
Sbjct: 295 DILGKDIEIAANHLANIYPTKGRGD----IINIQNARVICDYYNASPKSMQAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + A++GDM E+G+ S+  H +L   +     S ++L G +   + D LP  I 
Sbjct: 351 MAEN---KTAIIGDMLELGKNSKLLHEELVPYILDVGCSKIYLVGVNTKYIYDLLPSKIA 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             Y + +D L   I       D++++K S      ++++ 
Sbjct: 408 KKYFKNVDELITHITDLFKGNDLILIKGSRGLKLDKIVDY 447


>gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
 gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
          Length = 464

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 212/475 (44%), Gaps = 31/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q ++G  +G   +  V  IS D+R    +  FFA+KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLKGKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++      +++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVERELA-----VNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               L  +     +     G+ NN +GVPLTL R+  +  F + ELG +H+GEI + T +
Sbjct: 119 TAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLIPEHKFAVVELGANHIGEIAYTTEI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    ++   + +   
Sbjct: 179 AQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIVNLA-HYYPEWQKEIGD 237

Query: 242 LGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +++    G+ K+  ADF     +     S   +      +E+    +G H   N L  
Sbjct: 238 HELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSNALAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + AD+      L      +GR         +     ID+SYNAN  SMK+A+SV
Sbjct: 298 TALAMAVGADLTAVKAGLEQRSAVKGRLYPIEI---KDNVLFIDDSYNANVDSMKSAVSV 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q        RI V+GDM E+G+ S + H ++A+ +    +  V   G     +     
Sbjct: 355 LKQYPAF----RIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS---- 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                H+      +  F+   ++         V++ K S S     +I  L   F
Sbjct: 407 -GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASLCRSF 460


>gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
 gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
          Length = 454

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 202/471 (42%), Gaps = 30/471 (6%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +FH++   +   + +       ++ I  DSR IA  + F  +KG   DGH+FI  A + G
Sbjct: 4   SFHEIADVVGALNDVSQFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A          + I    +P   V D L A   LA     +    +IA+TGS GKTTTK+
Sbjct: 63  AVATF------SRIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  K Y   G+YNN IG+P T+  MP      + E+G  HLG+I  L+ + +P
Sbjct: 117 MIHDVLATTYKIYKTQGNYNNEIGLPYTVLHMPDSTQKLVLEMGQDHLGDIDLLSKIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I ++T I  AHL  F   E+IA  K +I  G+ K GT+ +  D    + L         
Sbjct: 177 KIGIVTLIGEAHLEFFGSREKIAQGKMQIANGMAKDGTLIVPADKIINDYLPDN------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  +  D  L +  +  +     V      +E      G + A N ++   +  
Sbjct: 231 QKVVRFGPDQ--DIFLTELVERKDSLSFAVNFMDGLIE--LPVTGKYNATNAMLATYVGQ 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +    AL      +    R           ++ + YNANP +MK  +     + 
Sbjct: 287 LEGVADEAIRSALKNLVLTK---NRTEWKKASNGADILADVYNANPTAMKLILETFLTLP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +  G++IA+L DM E+G+ S   H  +   L+  ++  +   G  +  L     +    
Sbjct: 344 ANEGGKKIALLADMKELGKDSVQMHSQMIRALNPEDLDTLICYGEDIAELAQLASQVFPM 403

Query: 422 IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V+Y       +    L   +Q+ L   D +++K SNS    +++  L  
Sbjct: 404 GKVYYFKKTAEEDQFADLVKQVQTILQPADQILLKGSNSMQLDKVLEALEN 454


>gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 455

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 206/466 (44%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L  A+    I        +G+SIDSR+I   + F A+ GP +DGHD++   
Sbjct: 1   MLKALKLSELTNALDARLISA--DASFDGVSIDSRAIKAGQLFIALTGPRFDGHDYLNEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +   ++P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVAALVERE----VADSTLPQLLVKDTRQALGQLGALNRAAFTKPVAAVTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +GVPLTL  +  +    + ELG S LGEI +   
Sbjct: 115 TVKEMLASILRTRGSVHATRGNLNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+A++     AH+  F G E+I  AK EI EGL   G   LN DD  F + K ++ 
Sbjct: 175 LTKPHVAILNNAGTAHVGEFGGPEKIVEAKGEIIEGLAADGVAVLNLDDKAFGIWKTRAA 234

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               + + +F  S   ADF        +       +        V  + +G H   N + 
Sbjct: 235 G---RKVLTFALSNTQADFHASDLATDARGCPAFNLHSPEGVERVQLNLLGTHNVANAMA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +      L    P +G   R    L +    +ID++YNANP SM AA+ 
Sbjct: 292 AAAAAHALGVSLFGIATGLGAVQPVKG---RTVAQLAKNGMRVIDDTYNANPTSMCAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+G+ ++  H D+ E      +S ++  G +++    A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGDWAEQGHRDVGEYA-RGKVSALYAVGPNMVHAVSAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 --GNEAQHFGTQAELIQALGAEQDTNTTILIKGSRSAAMENIVAAL 447


>gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
 gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
          Length = 463

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 142/477 (29%), Positives = 216/477 (45%), Gaps = 25/477 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  +L        IG      V  +S D+R    +  FFA+KG ++D HD++  A
Sbjct: 1   MIKLST-KELADIFSARLIG-AKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV  +       + +P   V D   AL +LA   R++     IAITGS GKT
Sbjct: 59  VEQGCSAVVVEREC-----DVDVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G++NN IGVPLTL R      F + ELG +H GEI 
Sbjct: 114 TVKEMTASILQKVVQDPDAVLFTQGNFNNDIGVPLTLLRFEPKHQFAVIELGANHQGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   LV+P +A++  +A AHL  F  IE +A AK EI++GL   G   + Y+ S      
Sbjct: 174 YTVDLVQPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIMEYEHSVLWKKY 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQN 295
                   +T     + K +D+  ++ +     S  ++   +   +E+    +G H   N
Sbjct: 234 WHEQIGDAETRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEINLPYLGLHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    +   L   ++     L      +GR        N     L+D++YNAN +S+K+
Sbjct: 294 AVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPN---LLLLDDTYNANVSSLKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL Q        RI  +GDM E+G  S S H  +A+   + N+  V   G     + 
Sbjct: 351 AIDVLRQYDKFF---RIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVIS 407

Query: 416 DALPRSIHVHYSETMD---GLFLFIQSSLVDGDVV-VVKSSNSCGFYRLINLLLEEF 468
           DA      VH+S+  +    +   IQ  L    VV +VK +       +INL+ ++F
Sbjct: 408 DACDG---VHFSDKTELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKF 461


>gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 459

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 208/478 (43%), Gaps = 31/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +   +    +G      V  +S DSR    +  FFA+KG ++D H ++  A
Sbjct: 1   MITL-SLSQIAAILGAELMG-DGTVIVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++G    VV      +I         V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 59  AEQGCVAAVVEHPTEGNIAR-----LIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM+   L              G++NN IGVPLTL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMVASILQQSAVDSDDVLFTQGNFNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +  AHL  F  ++ +A+AK EIF GL + G   +N   ++ +  +
Sbjct: 174 YTTSLAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTENGVAIINLAHNYQQKWQ 233

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A    +G   +  F   +  ADF   +     + ++  +      +++    +G H   N
Sbjct: 234 AD---IGRHAVQYFAYDNPRADFYAEQIHFSEQGAYFLLHTPQGRVQINSPYLGEHNISN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A      K L      +GR    +   N     L+D++YNAN  SMK+
Sbjct: 291 ALAATALAMNVGATTAQVKKGLETPSLVKGRLFPIQPCEN---LLLLDDTYNANVGSMKS 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL +        R+ V+GDM E+G+ +Q  H ++ E      +  V   G     + 
Sbjct: 348 AISVLQKYPAF----RVFVVGDMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVIS 403

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                     +      L  ++     Q       VV+VK S S     +I+LL   F
Sbjct: 404 AV----NSGRHFTDKTELVTYLTPIIQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 457


>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
 gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
          Length = 450

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 225/473 (47%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    +   LL+ +    I +         + I  D+R I P E F A++G ++DGHDF+
Sbjct: 1   MPWSVSISQLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            HA+ +GA   +V++D   +     + V  V D L A  +L    R R    +I +TGSV
Sbjct: 61  SHAIAQGAIAAIVDSDYENAD----VAVLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L++  + +   G++NN IGVP TL  +  + D+ + E+ M   G+IR 
Sbjct: 117 GKTTTKELIAAVLATEGRVHKTFGNFNNEIGVPKTLLELDTEHDYAVVEMAMRGEGQIRE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP+I VIT +  AH+      E IA AK E+   + +     LN+D+    LL A
Sbjct: 177 LTQIARPNIGVITNVGTAHIELLGSEEAIARAKCELLAEMPEDSVAILNHDNP---LLMA 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +    + ++G S   D Q       ++   ++V      M +     G H A N L
Sbjct: 234 TAQQVWSGEVVTYGLS-GGDIQ----GVLTDNQTIKV----GEMRLPLPLPGRHNASNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D  T    + V +   GR +R+          L+DE+YNA P +M AA+
Sbjct: 285 AALAVAQVLGIDWSTLQNGVKV-NMPTGRSQRFTLPH---DIILLDETYNAAPEAMTAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+        R+IAVLG M E+GE S   H  + E +    +    V + G    A+ 
Sbjct: 341 QLLADTP---GKRKIAVLGAMKELGERSLQLHQRVGETVQRLQLDGLLVLVDGKDAQAIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    I      T   L   +++ +  GD ++ K+++S G  R++N    EF
Sbjct: 398 QSA-EGIPSECFTTHADLVARLKTFVQAGDRILFKAAHSVGLDRVVNQFRAEF 449


>gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
 gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
          Length = 453

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 208/474 (43%), Gaps = 25/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L   +    IG      +  ++ D+R +     F A+KG  +       HA
Sbjct: 1   MIPV-SLQALADVLSAELIGA--DCQIIEVTTDTRQVTAGCLFVALKGERF-----DAHA 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    + +P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 53  FAADAVAAGAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +     G++NN IGVPLTL R+    DF + ELG +H+GEI + T 
Sbjct: 113 SVKEMAAAILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   ++   
Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQSM-- 230

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  KT++ F    ++  DF        ++ +   +     +  +     G H   N L 
Sbjct: 231 -LNDKTVWRFSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A ++   + L       GR        N+    L+D+SYNAN  SM AA  
Sbjct: 290 AAALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTENK---LLLDDSYNANVGSMTAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+G  ++  H  + E   L  I  V   G    AL  A 
Sbjct: 347 VLAEMP----GYRVMVVGDMAELGADAEECHRQVGEAARLAGIDKVIGIGPLSQALCAA- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
             S    + +    +   +   L +  V  V++K S S    +++  L E+ P 
Sbjct: 402 --SGSGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQEKAPC 453


>gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 458

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 207/463 (44%), Gaps = 24/463 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L  AI     G      +  ++ D+R + P   F A++G  +DGHDF   A + GA
Sbjct: 5   TLRTLADAIGATLYGD--DAPLAAVTTDTRKLTPGCLFIALQGESFDGHDFAARACEAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      L +P   V D   AL +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSRRLP-----LGVPQLLVADTRLALGQLAAWVRSQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L+         G+ NN IGVPLTL R+    DF + ELG +H+GEI +   L RPH
Sbjct: 118 SAAILAQCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + ++  +    AL  +
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVARAKGEIFSGLPAQGTAIINADSNDWDNWQ---QALPTQ 234

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ F     +  DF   + +   + +   +      + V     G H   N L    + 
Sbjct: 235 RVWRFSPQAGSGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLPLPGRHNIANALAAAALT 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +    + L+  H   GR    R    Q    L+D+SYNAN  SM AA  VL  +
Sbjct: 295 MSVGASLTQVRQGLAGLHAVPGRLYPIRLGEQQ---LLLDDSYNANVGSMSAAAEVLGAM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R+ V+GDM E+G  +++ H  + E      I  V   G     + +A     H
Sbjct: 352 P----GYRVMVVGDMAELGVEAEACHRRVGEAARAAGIDKVLSVGGLSRLIGEASGCGEH 407

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLL 464
                    +   ++  L +     ++VK S S    +++  +
Sbjct: 408 ---YMDKGAVIERLKHLLCEHAAITILVKGSRSAAMEQVVRGI 447


>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Clostridium cf. saccharolyticum K10]
          Length = 476

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 216/469 (46%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  ++   D ++A  G  +       +  ISIDSR+   +  F  + G   DGH FI+ A
Sbjct: 1   MQNIF-VRDAVKASHGRLLSGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAA 59

Query: 61  VQKGAGLVVVNTDMVA-------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +++GA  V  +            +          VDD   AL +L    R R    ++ I
Sbjct: 60  LEQGAAAVFTSEHSEESEEVKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTT+EM+  ALS+    +    ++N+ +GVPLTL+++    + G+ ELGMS  G
Sbjct: 120 TGSVGKTTTREMVAAALSAGFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPG 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  +  +    +AVIT +   H+ N    E I   K +I +G+   G +FLN D+    
Sbjct: 180 EMTVIAQIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLG 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +A+    G KT+Y FG  +NAD++    +         +    + + V    +G H  
Sbjct: 240 ISRARE---GHKTVY-FGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNV 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L +       ++ A + L  F   + R +       +   T+ID++YNA+P SM
Sbjct: 296 LNALAALAVADYNGVPLEAAAEKLREFTGFKNRQQIRE----KQGITVIDDTYNASPDSM 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KAA+ VLS        RR+AVL DM E+G   + FH ++ E L+   +  +   G     
Sbjct: 352 KAALRVLSSF--GQARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVTFGELAGE 409

Query: 414 LKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           + +       S+        + +  F++  L  GD V+ K SNS     
Sbjct: 410 IGEGARERRPSLQTAAFTDREKMTEFLKRELSAGDCVLFKGSNSMKLGE 458


>gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
 gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
          Length = 453

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 214/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis
           glossinidius str. 'morsitans']
 gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 455

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 210/476 (44%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR--SIAPQEAFFAIKGPHYDGHDFIL 58
           M P +T   +   +    +G      +  +  DSR  S A    F A+KG  +D HDF  
Sbjct: 1   MIP-FTLSAIAPVLNAERVGD--DCTILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAE 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  ++VN  +      L +P   V D   AL +L    R +  A ++A+TGS G
Sbjct: 58  QAVAAGAAALLVNRRLP-----LDVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+ KEM    L    +  A  G++NN IGVPLTL R+    DF + ELG +HLGEI + 
Sbjct: 113 KTSVKEMTAAILRQCGRVLATEGNFNNDIGVPLTLLRLTPAHDFAVIELGANHLGEIAWT 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LVRP  A++  ++ AHL+ F  +  +A AK EIF GL   G   LN D   +   +  
Sbjct: 173 TDLVRPETALVNNLSAAHLAGFGSLSGVAQAKGEIFAGLPANGCGILNADSHDWPHWQ-- 230

Query: 239 SHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              LG K ++ F        DF     +   +     +        V     G H   N 
Sbjct: 231 -QVLGHKAVWRFAVQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A++      L+      GR              ++D+SYNAN  SM AA
Sbjct: 290 LAACALALSVGAELPAVAAGLAQLQAVPGRLFPIAL---GAGRLMLDDSYNANVGSMTAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             VL+++     G R+ V+GDM E+GE +   H  + E ++L  I  V   G     + +
Sbjct: 347 AQVLAEMP----GYRVMVVGDMAELGEEAAECHRQVGEAVALAGIDKVLSVGSLSHLIGE 402

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
           A   S    + +    L   +   L +  V  V+VK S S    +++  L E+ P 
Sbjct: 403 A---SGRGEHFQDKTALTARLAQLLSEQAVMTVLVKGSRSAAMEQVVRALQEKAPC 455


>gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1087]
          Length = 456

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAHLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYTALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
 gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
          Length = 447

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 199/469 (42%), Gaps = 29/469 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++ Q      + +     V  +  DSR +     F  + G   DGH FI  A+  
Sbjct: 1   MFTVKEVAQLFG---LEVEDSRIVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIAS 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA     +           I V  V D L A+ KLA   R      ++AITGS GKTTTK
Sbjct: 57  GAIATFWSVQDQPED----ITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTK 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    LS   +TY   G+YNN IG+P T+  MP D    + E+GM H G++  L+ + R
Sbjct: 113 DLTASVLSQAFRTYKTQGNYNNEIGLPYTILHMPKDTKVVVLEMGMDHAGDLTTLSTIAR 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA IT I  AH+ N     +IA  K EI   L   G + +  D+     L        
Sbjct: 173 PDIAAITMIGEAHIENLGSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQ----GM 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG     D      ++ +EQ+   V    K  +     +G +  +N L+   I 
Sbjct: 229 TQQVVTFGIDAG-DVAAHILEEHAEQTVFSV----KEQDYRIPLLGTYNVKNALIAYSIG 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     L      + R +       +    L+ + YNANP +M   +    ++
Sbjct: 284 EKFGVTPEQIANGLKNVQVTKNRTQWLEM---ENGTRLLSDVYNANPTAMGLVLDSFGKL 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
               +GRR AVL DM E+G  S   H  +A+ +  Y    ++L G  +  L   L     
Sbjct: 341 P--VQGRRFAVLADMLELGPESSVMHAAMADHVQNY--DGLFLVGEQMDYLAKELAARDS 396

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + ++ +  +  L   ++  L   D++++K SN     ++++ L  E
Sbjct: 397 DVPLELYDANELAALIEDLKQLLQPADMLLLKGSNGMKLNQVVDALTSE 445


>gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 456

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 210/470 (44%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       ++    DSR +   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAGGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL+K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLKKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    +     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFDCNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++H++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGANSKSMHGSMITSLNPEIVTHLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V+Y       +  + L   ++ +L   D +++K SNS    +L+  L +
Sbjct: 405 KVYYFIKNDEKDQFEQLTKAVRENLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK150]
          Length = 456

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 205/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P   F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++       E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKNSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELKLTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPTDQILLKGSNSMNLAKLVEDLED 454


>gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 460

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 217/473 (45%), Gaps = 30/473 (6%)

Query: 1   MNPL---WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+   W  + L    QG          V  I+ D+RSI   E F A+KGP++DGH FI
Sbjct: 1   MIPMDFDWLANVLATDYQG------DNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFI 54

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A Q GA  V+V   +      + IP F V D   AL  +  A   +     IAITGSV
Sbjct: 55  AQAKQNGAIGVIVQHKV-----DVDIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSV 109

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT KEM    LS      A  G++NN IGVPLTL R+     F + ELG +HLGEI +
Sbjct: 110 GKTTVKEMCAAILSVHGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAY 169

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T + +P +AV+  +A AHL  F  +  +A AK EIF+GL+  G   +N D  F +    
Sbjct: 170 TTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLD 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K   L  + +  F  S+  D            ++   +  +   + V     G H   N 
Sbjct: 230 K---LDGRKVTRFSSSEKLDIWAENISLDENARASFTLCTKNAQIPVKLALPGKHNISNA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+   + S     ++    AL+     +G   R          T++D++YNAN  S+KAA
Sbjct: 287 LIAAALTSEFDVTLEDIANALATMGDVKG---RVNLINVSDLLTVVDDTYNANVKSVKAA 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS +     G RI  LGDM E+GE ++ +H ++ E      I+ ++  G       D
Sbjct: 344 IDLLSDMQ----GHRILALGDMGELGEEARQYHQEVGEYALEQGINELFTLGVLSRYASD 399

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466
                +   +    + +   IQ+S+   D    +VVK S S     L+  L+ 
Sbjct: 400 VY--GLPNRHFSNREQMLQQIQTSIKKVDKKTTIVVKGSRSSRMELLVTDLVN 450


>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 466

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 213/460 (46%), Gaps = 24/460 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++L A   +    +    V GI+ D+R++ P + F A++G  +DGHD+   A++KGA  V
Sbjct: 12  EVLAATPVNLSVPMTVNGVYGITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAV 71

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + N D    +    IP   VDD L A  +LA   R +    +IA+TGS GKTTTKE++  
Sbjct: 72  IANRDQGYHLQD--IPQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELIAA 129

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS+         +YNN IGVP TL  +  + D+ + E+ M   G+I  LT + RP I V
Sbjct: 130 VLSTQGNILKTQANYNNEIGVPKTLLELDSNHDYAVIEMAMRGSGQIALLTQIARPTIGV 189

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT +  AH+      + IA AK E+   +  T    LN+D+   + L   +  +      
Sbjct: 190 ITNVGTAHIGLLGSEDAIAKAKCELLAQMPDTSMAILNHDN---QRLMDTAATVWQGETL 246

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG +   D Q +            + + G +        G H A N L  L +   L  
Sbjct: 247 TFGLN-GGDVQGKLIDL------FRLMVDGITFP--LPLPGEHNALNYLAALAVAKHLQI 297

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     K LSV     GR +RY          ++DE+YNA   +M AA+ +L+Q      
Sbjct: 298 DWTPLRKGLSV-QMSGGRSQRYELP---NDIVILDETYNAGFEAMIAALHLLAQTP---G 350

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHY 426
            R IA+LG M E+G+ S+  H  + +      +  V+++       A+   +       +
Sbjct: 351 KRHIAILGSMKELGDHSEQLHQQVGQKAQQLQLDAVFITLKDREAEAITRGISALPSEGF 410

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +E  D L   +   +  GD ++ K+S S G  R+++   E
Sbjct: 411 AED-DALVQHLTEFVQPGDRLLFKASRSVGLDRVLHQFRE 449


>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 202/465 (43%), Gaps = 18/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +++ A  G  +   P   V  +  DSR +     F  +KG   D H F+  A   G
Sbjct: 3   MTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    M             VD    AL ++A A R R    ++ ITGS GKTTTKE
Sbjct: 63  AAAALTQEHMRMEAEEAW---IAVDSTQLALQQIAAAYRQRFSIPVVGITGSAGKTTTKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M  +ALS+  K     G++N+ IG+PL + +   + +  + E+G+S  GE+  L  +  P
Sbjct: 120 MTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLAQVAEP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T +   H+        I   K  I +   +   +FLN DD     L+ K+   G 
Sbjct: 180 KYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT---GY 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIV 303
           +T++ +G+    DF+        E +       G +S+EV    +G H   + L  L + 
Sbjct: 237 ETVF-YGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVTLPVLGMHHVLDALAALAVA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +  A  AL  + P   R + Y          +ID+SYN++P + K+++SVL+  
Sbjct: 296 ERLGVPLKRAAAALRDYRPLAMRQQIYHV----NEVAVIDDSYNSSPGAAKSSLSVLAGF 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PR 420
                GRR+AVL DM E+GE S+  H ++    +   +  +   G    A+ +       
Sbjct: 352 RA---GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVGQEAKAVAEGARSVRA 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            I     +        ++S L  GD V+VK S       ++  LL
Sbjct: 409 GIDCRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVRALL 453


>gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
 gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
          Length = 455

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/460 (28%), Positives = 202/460 (43%), Gaps = 21/460 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +++   +QG   G       + +  DSR+I   + F A+ GP +DGH F+     KGA 
Sbjct: 7   LNEIAGPLQGALAGD--DVTFDSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V   M      L +P   V D   AL +L    R      + A+TGS GKTT KEML
Sbjct: 65  AALVQRTM----PELGLPQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEML 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L RP +
Sbjct: 121 ASILRTRGPVLATRGNLNNDLGVPLTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT    AH+  F G E+I  AK EI EGL   G   LN DD  F++ + ++     + 
Sbjct: 181 AIITNAGTAHVGEFGGPEKIVEAKGEILEGLPADGIAVLNRDDPAFDIWQRRAAG---RR 237

Query: 247 IYSFGKSK-NADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + SF     +ADF  R  +  +       ++       +  + +G H   N L       
Sbjct: 238 VLSFALDASDADFLARDIQPDARGCPAFTLRGPAGEARIQLNLLGRHNVANALAAASAAH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +      L    P +G   R           +ID+SYNANPASM+AAI +L+  S
Sbjct: 298 ALGMPLVGIRAGLESLQPVKG---RAVAQFAPSGVRVIDDSYNANPASMRAAIDILAGFS 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR +  LGDM E+G  ++  H  +    +   +  ++  G  +     A  +    
Sbjct: 355 ----GRTLLALGDMGELGAWAEEGHRQVGAYAAG-KVDALYAVGPLMTHAVAAFGKGGR- 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +     GL   + S       +++K S S    ++++ L
Sbjct: 409 -HFADQAGLLEALCSEQHPDTTILIKGSRSAAMDKIVSAL 447


>gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 504

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 201/476 (42%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T H++   +     I       +     DSR I P + F  +KG   DGHDFI  
Sbjct: 49  MN--LTLHEVAHLVHAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 105

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA        +         P   V+DVL A   LA A   ++K  + A+TGS GK
Sbjct: 106 AFENGAVATFSEKVVEGH------PYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 159

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   LS+   TY   G+YNN IG+P T+  MP   D  + E+G  HLG+I  L+
Sbjct: 160 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 219

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P  A++T I  AHL  F    EIA  K +I +G+ + G + +  D      L  K 
Sbjct: 220 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPEK- 278

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +T+  FG  +     + +  +  +          ++++      G + A N ++ 
Sbjct: 279 -----QTVVRFGPDEE--IFITELIERKDSLTFRANFLEEAID--LPVTGKYNATNAMIA 329

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             +            R           ++ + YNANP +M+  +  
Sbjct: 330 AYVALQEGVSEAAIRDSFETLQLTR---NRTEWKKASNGADILSDVYNANPTAMRLILET 386

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     
Sbjct: 387 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 446

Query: 420 RSI---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     HV+Y       +  + +   ++ SL + D +++K SNS    +L+  L  
Sbjct: 447 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 502


>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
 gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
          Length = 472

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 18/466 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            D++ A  G  +          ISIDSR++   + F AI+G  +DGHDFI   + +GAG 
Sbjct: 2   SDVIAATGGELVQGKGNEMFENISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGG 61

Query: 68  VVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+++    + I +           V D + AL  LA   R      + AITG+ GKT+TK
Sbjct: 62  VMIDQAHASRINTPRATGRGARVVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM  +      +  A  G++NN IG+PLTL R+       I E+GM+  GEI  L  +  
Sbjct: 122 EMAAMVCGRRYRVLATTGNFNNEIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICE 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+  +   HL     I+ +A AKAE+ E L    T  +N DD     +  K     
Sbjct: 182 PDMGVVLNVGAGHLEGVENIDGVARAKAELLEALTDKDTAIVNADDMRVMKMAQKVRG-- 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++G  + AD      ++   +   ++ L    + + V     G  M  N L    
Sbjct: 240 --RVVTYGMRQKADITAASVRRQDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I + L          L  F P  G   R      +  FTL+D++YNANP SMKAA++ L 
Sbjct: 298 IGAGLGLSAPEIKAGLENFSPVPG---RMTITQTRAGFTLVDDTYNANPESMKAALAGLR 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++     GR I ++GDM E+G+ +   H     + +   +  ++++G    A+      +
Sbjct: 355 ELKGA--GRGILIMGDMFELGDHAPVMHGKTGVMAAESGVDRLYVTGEFAEAVAGGAAAA 412

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    E+ + +   +   L  GD V+VK S       ++  L
Sbjct: 413 GMTPEKIMIESKETIIEAVCPVLEPGDWVLVKGSRGMRMETVVQAL 458


>gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 478

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/473 (35%), Positives = 250/473 (52%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G +IG       +G+SID+R++AP + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAKEAESATGGRAIG---DWTCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V    V    +   P+  V+DVL  L  L  AAR R++A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVT--HVPEGVAEDAPLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML    +   + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  + +
Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++TT+A  HL  F+ + EIA  KA +F+GL+  G   +N D     +L AK+    
Sbjct: 177 PDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +  FG+     ++L   +   + + +     G  +       G H A N L  L   
Sbjct: 237 LREVE-FGEH-GYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAAISV 359
             + AD+  A  +L  + P +GRG R    L+         LID+SYNANP SM AA+ V
Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEV 354

Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L        I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  + +
Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMKS 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L D LP      ++ET   L   + S L  GDVV+ K S S     +++ + +
Sbjct: 415 LYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLSMKLGLIVDAIRK 467


>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
           [Rickettsia prowazekii str. Madrid E]
 gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
           2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
           [Rickettsia prowazekii]
 gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           prowazekii Rp22]
          Length = 449

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 237/460 (51%), Gaps = 14/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L  A+    I I      N +  +S+ +   + F A++G   DGHD+I  A+ K
Sbjct: 2   IWNSKTLSIALG---IEISNSVNCNEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  +       +  V++   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GATAVIVSKQVEINDKD---KIILVNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L I L      +A  G++NN++G+ + LA M  D ++ IFELGM+H GEI  L  +++
Sbjct: 115 EALKILLQHDFIVFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHQGEISELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+I  I+ AHL  F  +EEIA AK EIF+   K     +N  ++ +  + +    L 
Sbjct: 175 PNIAMINNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  IYSFG S  A  +L  +K   EQ  ++  +  K +++    I  H A N    L I+
Sbjct: 235 ITNIYSFGHSSKASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLII 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ + K L+     +GRGK     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 295 DILGKDIEISAKYLADIALTKGRGK----IINIQNSRVICDYYNASPQSMKAALEYLKQV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + +++G+M E+G  SQ  H +L   +     + V+L G +   + D LP  I 
Sbjct: 351 PADN---KTSIIGEMLELGWNSQRLHEELVPYILDAGCTKVYLVGAYTKYIYDLLPNKIS 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             + + ++ L   I       +++++K S      ++++ 
Sbjct: 408 KKFFKNVEELITHITDLFEYSELILIKGSRGVKLDKIVDY 447


>gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 486

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 212/469 (45%), Gaps = 30/469 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + H++ + +     +       +  I  DSR+I+  + F  +KG   DGH+FI  A   G
Sbjct: 35  SLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNG 93

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK+
Sbjct: 94  AIATISEKEIEGH------PYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKD 147

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 148 MIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKP 207

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A       
Sbjct: 208 RIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPAN------ 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG  +    Q+ + K+  E+  +  +      ++     G + A N ++   +  
Sbjct: 262 QMTIRFGHDQE--LQVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGK 317

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I 
Sbjct: 318 LLAVAEEDIVDALENLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIP 374

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +    
Sbjct: 375 NNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPI 434

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V++       +  D L   ++ +L + D +++K SNS    +++++L
Sbjct: 435 GKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 483


>gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
 gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
          Length = 457

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 207/475 (43%), Gaps = 35/475 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ A           VDD L A  KLA     ++   +IA+TGS GKTTTK+
Sbjct: 63  ALATFTEKELPADQAH-----ILVDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D   D F          
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFL--------- 228

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    A+  + +  +  +            +       G + A N ++   
Sbjct: 229 PSNLDVVRFG--DGAELTVSELTEFKDHLTFSTNFLDGQVT--LPVTGKYNATNAMVAAY 284

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S
Sbjct: 285 VAKHLGVTEENILTALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLILETFS 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     + 
Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401

Query: 422 I---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 402 FPLGHVYYFKKIADEDQFDAMVKHIKESLGEHDQILLKGSNSMNLAKVVEELQAK 456


>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 207/472 (43%), Gaps = 23/472 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
            KGA  +V+    V  +         V D L AL  LA   R R +   ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPV---VLVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L   ++     G+ NN +G+PL+L  +     F + E+GM+  GEI  +  
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A++ 
Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAART- 266

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   ++G+++NA  +    +   E      + +      V    +G H   N L  
Sbjct: 267 ---GQQRITYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAA 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + +             +         KR +         LID++YNANP+SM AA++ 
Sbjct: 324 AALATAAGVSPAEIA---AGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALAT 380

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  +    + R +AVLGDM E+GE S + H  +   ++  +  ++   G     +  A  
Sbjct: 381 VHNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAAR 438

Query: 420 R----SIHVHYSETMDGLFLFIQS-----SLVDGDVVVVKSSNSCGFYRLIN 462
                +         + +   ++       L   D+V+ K S       +I+
Sbjct: 439 HRGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490


>gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 140/470 (29%), Positives = 213/470 (45%), Gaps = 28/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +   A+ G  I    +  +  +  DSR I     F  + G   DGH+F   A
Sbjct: 1   MN--FTVKE-AAAVFGQPI--ENETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   + +   +       I V  V D + A  +LA A + +    IIAITGS GKT
Sbjct: 55  KDNGAIATLWSHPTIQPPQG--ILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   +TY   G++NN +GVPLT+   P D    I E+GM H GEI  L+ 
Sbjct: 113 TTKDMVDAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A IT I  AH+ N    E IA AK EI  GL+K G   +  D+   +       
Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLLDPFVPNL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               +TI +FG ++  D Q    ++  +Q+   V   G +       +G +  +N L+ +
Sbjct: 232 ---TQTIETFGLTEG-DLQGDIVEESQDQTIFTV--AGTTFT--LPVLGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+        +   + L+ F   +    R +         ++ + YNANP +M   +   
Sbjct: 284 GLGRHFGVSNEAIKEGLAHFQLTK---NRTQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++    EGRRIAVL DM E+G  S   H  +A  L       V+L G  + AL+  L +
Sbjct: 341 RKLP--LEGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAQ 397

Query: 421 S---IHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           S     V Y  T +   L   ++ +L   D +V+K SN  G   +++ L 
Sbjct: 398 SPLADKVRYFATDEKPQLIASLKETLEPSDSLVIKGSNGMGLSEVVDALK 447


>gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 479

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 208/472 (44%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 26  TLHEIAKIVGSKNDVAAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFENG 84

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+ A           VDD L A  KLA     ++   +IA+TGS GKTTTK+
Sbjct: 85  ALATFTEKDLPADQAH-----ILVDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKD 139

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 140 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKP 199

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +       
Sbjct: 200 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLE---- 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A+  + +  +  +            +       G + A N ++   +  
Sbjct: 256 --VVRFG--DGAELTVSELTEFKDHLTFSTNFLDGQVT--LPVTGKYNATNAMVAAYVAK 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 310 HLGVTEENILSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLILETFSAIP 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 367 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQIFPL 426

Query: 422 IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 427 GHVYYFKKTADEDQFDAMVKHIKESLGEHDQILLKGSNSMNLAKVVEELQAK 478


>gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
 gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
          Length = 453

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 212/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    +G+     ++ +S DSR+I  +  F A+ G  +D HDF   A+  GA 
Sbjct: 6   LSQLCSVLNARLVGV--DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVQRELEADCS-----QLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  I+ +  AK EI++GL +     +N D +  E  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      ++V    IG H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+     +G   R      +    LID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIRHGLAHLSKVKG---RVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
 gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
          Length = 454

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 142/474 (29%), Positives = 224/474 (47%), Gaps = 27/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  D+   ++G   G   +  +  ++ D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MIAL-TLSDIANIVEGTQSGG--EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  ++V   +      + IP   V D   AL  L      R     +AITGS GKT
Sbjct: 58  ADKGAAALIVERQL-----DIDIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS + +     G++NN IGVPLTL R     DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSGLGQVLYTAGNFNNDIGVPLTLLRSTPQDDFSVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  ++ + +AK EI++GL   GT  +N D     +    S 
Sbjct: 173 LVKPDIAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALINLDSQGESIW---SE 229

Query: 241 ALGIKTIYSFGK-SKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  K + +F K + NADF        SE      +     ++E+    +G H   N + 
Sbjct: 230 VLQDKNLITFSKQNTNADFYGSDIAMSSEGYPLFTLHTPIGNVELQLSLLGEHNVANAVA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +     A ++     L      +   +R          TLID+SYNA+  +MKAA+ 
Sbjct: 290 ASALAIQCGATLEQIKIGLQSLSKVK---RRVDVEKLTEHITLIDDSYNASVPAMKAAVD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+Q     +G+R  +LG+M E+G  S + H ++ +  + +   HV   G     + D L
Sbjct: 347 LLAQFK---QGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLTYGEDAKVISD-L 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEEF 468
              +H    ++ D +  +I+ +L+        ++VK + S G Y + N L E +
Sbjct: 403 CGGMH---FQSHDSMLEYIERNLIQLNQTSHTLLVKGALSAGMYTIANALKETY 453


>gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
 gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
          Length = 453

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 214/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
 gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
          Length = 480

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 216/469 (46%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  ++   D ++A  G  +       +  ISIDSR+   +  F  + G   DGH FI+ A
Sbjct: 5   MQNIF-VRDAVKASHGRLLSGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAA 63

Query: 61  VQKGAGLVVVNTDMVA-------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +++GA  V  +            +          VDD   AL +L    R R    ++ I
Sbjct: 64  LEQGAAAVFTSEHSEESEEVKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGI 123

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTT+EM+  ALS+    +    ++N+ +GVPLTL+++    + G+ ELGMS  G
Sbjct: 124 TGSVGKTTTREMVAAALSAGFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPG 183

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  +  +    +AVIT +   H+ N    E I   K +I +G+   G +FLN D+    
Sbjct: 184 EMTVIAQIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLG 243

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +A+    G KT+Y FG  +NAD++    +         +    + + V    +G H  
Sbjct: 244 ISRARE---GHKTVY-FGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNV 299

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L +       ++ A + L  F   + R +       +   T+ID++YNA+P SM
Sbjct: 300 LNALAALAVADYNGVPLEAAAEKLREFTGFKNRQQIRE----KQGITVIDDTYNASPDSM 355

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KAA+ VLS        RR+AVL DM E+G   + FH ++ E L+   +  +   G     
Sbjct: 356 KAALRVLSSF--GQARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVTFGELAGE 413

Query: 414 LKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           + +       S+        + +  F++  L  GD V+ K SNS     
Sbjct: 414 IGEGARERRPSLQTAAFTDREKMTEFLKRELSAGDCVLFKGSNSMKLGE 462


>gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 453

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 142/471 (30%), Positives = 216/471 (45%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P    HD++  ++    GI P   +  ++ DSR+I     F A+ G  +D H F  +A
Sbjct: 1   MIPFM-LHDIITILRAKVYGINP--MIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++VN  +      L+IP   V+D L AL +L+   R +  A +IA+TGS GKT
Sbjct: 58  VLAGASAILVNRQLP-----LNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    K  A  G+ NN IGV LTL R+    DF I ELG +H+GEI    +
Sbjct: 113 SVKEMTASILRQCGKVLATQGNLNNDIGVSLTLLRLTPQDDFAIIELGANHIGEISSNAN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P IA++  I+ +HL+ F  +  +A AK EIF  L   G + LN              
Sbjct: 173 LVLPEIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVILN---ENSNDWLNWQQ 229

Query: 241 ALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               KT++ F  +K  N  F   K        +  +     S +V    +G H   N L 
Sbjct: 230 GSKCKTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQGSCQVQLPMLGKHNITNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A++      LS   P  GR    +  + +    LID+SYNAN  SM AA  
Sbjct: 290 ASALAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVGK---LLIDDSYNANVNSMIAAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS++     G  + V+GDM E+GE    +H  + + +++  I+ V   G     + +  
Sbjct: 347 VLSEMP----GYLVMVVGDMAELGEKEIKYHQQVGKFIAMVGINKVLSIGNLSYIISN-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
             S    +      L   +   L+  +   ++VK S +    ++I  L E+
Sbjct: 401 -TSRRGEHFNNKSALTNRLIQLLLKYNIITILVKGSRNTTMEQVIQELKEK 450


>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 482

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 207/474 (43%), Gaps = 22/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSATDAAAWMAGAHLAG-PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A++    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPAAALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +         A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
           + +P +A+I      H      +E +A+  A +   L   G      D      +  L +
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A   A G + +  FG    A          ++   ++V   G     +   +G H A+N 
Sbjct: 247 A---AAGTRRVLDFGIEGGA-VSAT-VTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L             +   +ALS F P +GR +R           +ID++YNANP S++AA
Sbjct: 302 LAATACALAAGIAPEVIAQALSAFAPVKGRLQR---KPGVHGGLVIDDTYNANPDSVRAA 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + D
Sbjct: 359 IDALATLPAP----RWLVLGDMGEVGAQGPAFHQEIGAYARERGIDAVLATGELARHVVD 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 415 AFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
 gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
          Length = 453

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 214/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGQVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R      +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMTQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G +   + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKYAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK408]
          Length = 456

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P   F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    +     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFDCNFLEQKID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEADIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
 gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
          Length = 427

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 203/441 (46%), Gaps = 22/441 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +ID+R + P   F A+KG  +DGHDF   A             +V+    +  P   V D
Sbjct: 2   TIDTRKVTPGCLFVALKGERFDGHDFAEDA-----VAAGAGALLVSKRLLVGGPQLVVKD 56

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN IGVP
Sbjct: 57  TRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGVP 116

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A AK
Sbjct: 117 LTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAK 176

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSE 268
            EIF GL   GT  +N D + +   +   H    K ++ F     ++ DF     +  S+
Sbjct: 177 GEIFAGLPAKGTAIINADSNDWPHWQETLH---HKRVWRFAPHGAEDIDFFASDVRIASQ 233

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            ++  +     ++ +     G H   N L    +   + A +    + L+      GR  
Sbjct: 234 VTYFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVREGLTQLQAVPGRLF 293

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
               A  +    L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+GE +   
Sbjct: 294 PIELAAGK---LLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVDC 346

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-- 446
           H  + E      I  V   G     L DA     H    +  + L   +   L++  V  
Sbjct: 347 HRQVGEAAKQAGIDKVLSVGTLSQTLSDASGCGEH---FQDKNTLAARVSELLLEHPVIT 403

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V++K S S     ++  L E+
Sbjct: 404 VLIKGSRSAAMEDVVRALQEK 424


>gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
 gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
          Length = 453

 Score =  346 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 211/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    +G      ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLVGA--DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVQRELEADCS-----QLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  I+ +  AK EI++GL +     +N D +  E  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      ++V    IG H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+     +G   R      +    LID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIRHGLAHLSKVKG---RVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK160]
          Length = 456

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P   F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    +     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFDCNFLEQKID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSDADIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
 gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
          Length = 473

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 138/480 (28%), Positives = 214/480 (44%), Gaps = 29/480 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L +   G  I        + +SI++R+++  + F AIKG  +DGH F+ +A
Sbjct: 1   MIKPLDLQNLSRRFGGEVINNSHAVNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVANA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  +VV  ++V       +P + V D   AL  +A A R      I+AITGS GKT
Sbjct: 61  QNQGAIALVVEKEIV----DSDLPQWLVGDTTLALGHIAEAQRDNFLGKIVAITGSSGKT 116

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           T K ML   L        +A  G+ NNHIGVPL+L  +     + + E+G S +GEI++L
Sbjct: 117 TVKGMLESILRVAVSDHVFATKGNLNNHIGVPLSLLSLKSQHQYAVIEMGASAVGEIQYL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P +A+I  +  AH+  F  I+ IA  K EI+ GL   G   +N  D +      +
Sbjct: 177 TQMAKPDVAMINNVMSAHVEGFGSIDNIAKGKGEIYNGLTNAGVAVINIADKYAPQWLEQ 236

Query: 239 SHALGIKTIYSFGKSKN----------ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287
           +     +    F  S +          A+      KQ     +  ++QL  KS E+    
Sbjct: 237 N---SQRQTLLFSASTDVSNAMDMNSVANITATNVKQKHNGCAKFDLQLLEKSTEINLSV 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L        L   ++   + LS F    G   R  C       T+ID+SYN
Sbjct: 294 LGMHNVANALAASTCAYALNISIEDIAQGLSEFTGVAG---RLHCLEGVNDSTVIDDSYN 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP S  AAI VLS +S     + + V+GDM E+G+ S S H  +    +  NI  +   
Sbjct: 351 ANPNSFCAAIDVLSDMSA----KTVLVMGDMAELGDDSDSEHEKIGRYANEKNIDLLLTL 406

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           G            S    + ++++ L            V+++K S S    R++  L + 
Sbjct: 407 GRQSEEASKVF--SGDKQHFDSVEQLITVAVQQANKSTVLLIKGSRSSRMDRVVQALTQR 464


>gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
 gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
          Length = 453

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 213/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVQRELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  K 
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKN 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 212/463 (45%), Gaps = 22/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 5   MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 63  AVGALVEREVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 119 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++   G
Sbjct: 179 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---G 235

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F      AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 236 NRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAVAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+ +L+
Sbjct: 296 ASCAMGVPLEGIVTGLNNVQPVKG---RAVAQIASNGTRVIDDTYNANPASINAAVDILT 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A    
Sbjct: 353 GFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSAF--G 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H ++  +   L   + +       +++K S S     ++  L
Sbjct: 406 EHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
 gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
          Length = 453

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 214/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLSSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 207/472 (43%), Gaps = 23/472 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
            KGA  +V+    V  +         V D L AL  LA   R R +   ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPV---VLVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L   ++     G+ NN +G+PL+L  +     F + E+GM+  GEI  +  
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A++ 
Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAART- 266

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   ++G+++NA  +    +   E      + +      V    +G H   N L  
Sbjct: 267 ---GQQRITYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAA 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + +             +         KR +         LID++YNANP+SM AA++ 
Sbjct: 324 AALATAAGVSPAEIA---AGLAAYRPFAKRMQLLPFIAGLKLIDDTYNANPSSMLAALAT 380

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALK 415
           +  +    + R +AVLGDM E+GE S + H  +   ++  +  ++   G        A +
Sbjct: 381 VHNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAAR 438

Query: 416 DALPRSIHVHYSETMDGLFLFIQS-----SLVDGDVVVVKSSNSCGFYRLIN 462
                +         + +   ++       L   D+V+ K S       +I+
Sbjct: 439 HRGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490


>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
 gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
          Length = 466

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 210/462 (45%), Gaps = 15/462 (3%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A      G  P   + G+  DSR+IAP + F A+KG ++DGHDF+  A+Q GA   +
Sbjct: 9   VIAATGAELTGQAPAQAMAGVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAAL 68

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V      +     +    VDD   AL +LA A R    A I+A+TGS GKT+TKEM+   
Sbjct: 69  VERGFNPTAAGQCL--LRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQV 126

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L    + +   G+ NNHIG+PLTL  +  +    + E+GM+  GEI +L  + RP +AVI
Sbjct: 127 LGQRFEVHKTKGNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + PAHL     IE +A+AKAE+F+ L       +N DD        K        + +
Sbjct: 187 TNVGPAHLGPLGSIEAVAAAKAELFQALGPEAVAAVNLDDPLLAPWADKLPC----RVIT 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTA 308
           FG    A  + R       +    +++  +  E V     G H  +N L    + + L  
Sbjct: 243 FGLDPKAQARARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVGAGLGL 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +       +  F P +G   R      +G   LID++YNANPAS+ A +  L+ +S  G+
Sbjct: 303 EAWQIKDGVEAFTPTKG---RLENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGK 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HV 424
           G    ++GDM E+G  +   H  +      +    V   G     +      +       
Sbjct: 360 GHG-LIMGDMGELGPEAPRLHRQVGRQAVEFGCKFVLAVGQMADEVVAGAREAGLAAPKA 418

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +D L       + +G  V+VK S +    R+I  L E
Sbjct: 419 LAFAEVDQLIDASPRVIGEGWTVLVKGSRAARMERVIQRLQE 460


>gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
 gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
          Length = 457

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 207/472 (43%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ A           VDD L A  KLA     +++  +IA+TGS GKTTTK+
Sbjct: 63  ALATFTEKELPADQVH-----ILVDDALEAFQKLAAYYLEKTEVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +       
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVNPFLPSNLE---- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A+  +    +  +            +       G + A N ++   +  
Sbjct: 234 --VVRFG--DGAELTVSDLTEFKDHLTFSTNFLDGQVT--LPVTGKYNATNAMVAAYVAK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLILETFSAIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 345 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDMVIFYGEDIAELSQLASQMFPL 404

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 405 GHVYYFKKTADEDQFDAMVKQIKESLGEHDQILLKGSNSMNLAKVVEELQAK 456


>gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK49]
          Length = 456

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +V            VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVVEGA------YILVDDVLTAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    +     +S++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFDCNFLEQSID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++ VL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLVVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVQYFVKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 455

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 213/466 (45%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L  A+    I        +G+SIDSR+IAP + F A+ GP +DGHD++   
Sbjct: 1   MLKALKLSELTSALNARLIAA--DATFDGVSIDSRAIAPGQLFVALAGPRFDGHDYLNEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    + + ++P   V+D   AL +L    R      + AITGS GKT
Sbjct: 59  AAKGAVAALVERE----VTNSTLPQLLVNDTRQALGQLGALNRAAYGNPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S LGEI +   
Sbjct: 115 TVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +PH+AV+     AH+  F G E+I  AK EI EGL+  G   LN DD  FE+ K ++ 
Sbjct: 175 MTKPHVAVLNNAGTAHVGEFGGPEKIVEAKGEIIEGLDADGVAVLNLDDKAFEIWKTRA- 233

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G + + +F  S   A+F      + +       +     +  V  + +G H   N L 
Sbjct: 234 --GERKVLTFALSNLAANFYASDLDRDARGCPAFNLHSPDGAERVQLNLLGTHNVANALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +   +  L+   P +G   R    L      +ID++YNANP+SM AA+ 
Sbjct: 292 AAAAAHALGVSLPGIVAGLNAVQPVKG---RSVAQLASNGMRVIDDTYNANPSSMCAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+GE +Q  H D+        +  ++  G  +     A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGEWAQQGHHDVGAYA-RGKVDALYAVGPMMAHAVAAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               H  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 --GEHARHFTTQAELIQALGAEQDPNTTLLIKGSRSAAMENIVAAL 447


>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 464

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 207/469 (44%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F +++ A+ G  I          +S D+R I  ++ F A+KG  ++G+ +   A  KG
Sbjct: 4   MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKG 63

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+      S  +    V  V D   AL  LA   + +    +I ITGS GKTTTK
Sbjct: 64  ASICIVDEVYFKKSEINECTSVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++T  LS+  K +   G+ NN IG+P  + R+    D  + E+GM++ GEI  +    R
Sbjct: 124 DLITSVLSAKFKVFKTEGNLNNQIGLPHMIFRLNNSYDVAVLEMGMNNRGEIHSMAKAAR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT +  AH+ N    E I +AK EI +   K  T+ +N D+     LK       
Sbjct: 184 PDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVINSDNDMLSNLKEDRF--- 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLG 301
              I   G  +N+D      +   +     +      ME     +  G +   N L+ + 
Sbjct: 241 --NIRRVGLEENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGKYNVLNSLLAVA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              IL        + L        R +          F +I++SYNANP SMKAAI VL 
Sbjct: 299 CGRILNMTYGEIREGLKNIETTAMRME----ICKGKKFNVINDSYNANPESMKAAIDVLK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419
                   RR+AVLG M E+G+ S   H ++ +      I  +   G +    K      
Sbjct: 355 NFKSK---RRVAVLGTMGELGDESCRMHEEVGKYAGENGIDILIALGEYAEDFKRGFQVT 411

Query: 420 -RSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++      +T  + L   ++  +V+GD V++K+S    F  +   L +
Sbjct: 412 NKNGKCISFDTYAETLEFLLKKCIVEGDTVLIKASRVMKFETIAEELKK 460


>gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 457

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 204/467 (43%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T H +   I G  +        +G +  DSR + P   FFA+ G  +DG+ F   
Sbjct: 1   MISL-TAHGISNVIGGKLVSGPFDRVASGGVCTDSRHLPPHAVFFALGGEKFDGNLFAPE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  + A  VVV+   V      S  V  V+D L AL KLA   R     T+I +TGS GK
Sbjct: 60  A-SRTAAAVVVSR--VEEGMDPSCAVILVEDTLEALQKLASWWRSELTLTVIGLTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++    LS   +T A  G+ NNHIGVPL++ R     +  ++E+GM+H GE+  L 
Sbjct: 117 TSTKDLTASVLSQGFRTIATQGNLNNHIGVPLSILRATPSDEAAVWEMGMNHSGELAPLC 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP I +IT+I  +H+      E IA  K  +   L + G +    D  + ++++  +
Sbjct: 177 EMTRPKIGIITSIGTSHMEYLGSRENIAREKCTLARCLPEDGFMIFPADCDYADMIRQST 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLM 298
            A  I      G       +          +   + +     E V     G HM  N L+
Sbjct: 237 RAACIDCGIGAGT-----VRAENPVSTENGTRFILSIPDFCREEVELPVHGRHMVTNALL 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                       +     L+      GR    R         ++D++YNANP SM+AA+ 
Sbjct: 292 AAAAGWAAGLAKEQIASGLNQARLTGGRLHCTRI----NGILVVDDTYNANPDSMQAALH 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            ++ +S    GRR AVLG M E+G  S+  H+ +        +  V   G     + DA+
Sbjct: 348 TVAGLS--CTGRRFAVLGRMGELGAFSEEGHVLVGRTAEELRLDCVVSVGTDAARITDAI 405

Query: 419 PRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +      +  + +    +++S    GD+V+ K S      +++NL
Sbjct: 406 SPNAFTQSLHFGSAEEAAEWLRSHTAPGDIVLFKGSRLARMEQVMNL 452


>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 455

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 203/466 (43%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+    +L + +QG   G         +  DSR IA    F A+ G ++DG+D++   
Sbjct: 2   MRPM-RLSELQEPLQGRITG--EDVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYVEAV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   +V+    ++     +P   V+D   AL +L    R      ++AITGS GKT
Sbjct: 59  AENGAVAALVSRSSSSA-----LPQLCVEDTQTALGRLGAFNRDLYTGPLVAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K ++   LS    T A  G++NN +GVPLTL R+  + +F + E+G +  G+I +L  
Sbjct: 114 TAKNLINGVLSQRGATLATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWLCE 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +AV+    PAH+ +F  +E IA  K EIF+ L       +N D  + E  KA++ 
Sbjct: 174 LGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKARA- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G  TI  F  + +A     + +      S          ++V     G H   N L  
Sbjct: 233 --GTATILDFSLNGDAAVVATQIESHGIAGSSFVAVTPKGCVDVSLRLPGEHNIANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +       +D     L    P  G   R    +      +ID+ YNANP S  AAI  
Sbjct: 291 IAVGLACELALDEIAAGLESVAPVAG---RLSVQVAASGALVIDDCYNANPGSALAAIDT 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      EG+   V+G M E+GE S   H  L        ++  W  G  +    DA  
Sbjct: 348 LAA----SEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVGAELKVAVDAF- 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 + E  D   +   +S   GD V++K S      R++  L+
Sbjct: 403 -GERGRWFEHCDQAVVAASASFSQGDTVLIKGSRGARMERVLQALV 447


>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
 gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
          Length = 493

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 134/496 (27%), Positives = 210/496 (42%), Gaps = 50/496 (10%)

Query: 7   FHDLLQAIQGHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             ++L  +Q      +P       +       IDSR + P   F A+ G   +GH F+  
Sbjct: 4   LANILYGVQPAWSRQMPYIPPQWQELVFGETVIDSREVEPGTLFVALAGERTNGHTFLPD 63

Query: 60  AVQKGAGLVVVNT----------DMVASIGSLSIPV---------------FGVDDVLGA 94
            + +GA   +V+                  +L  PV                 VDD L A
Sbjct: 64  VIARGALGALVSRTEIEARTTILARTPRRWALVNPVTGAGLDSATPGVCLLIAVDDPLMA 123

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +LAV  R +   T++ ITGSVGKT+TKE L   LS    T     S+N+   VP TL 
Sbjct: 124 LQRLAVYHRRQLTPTVVGITGSVGKTSTKEALAALLSQRFCTLKSKRSFNSEATVPTTLL 183

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           ++    +  + E+GM   GEIRFL  L RP I ++T + P HL      E I  AKAE+ 
Sbjct: 184 QLAPAHEVAVLEMGMWAPGEIRFLADLARPQIGLVTNVGPTHLERLKSQEAIWYAKAELV 243

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME 273
           E L + G   LN DD     ++  ++A     ++S+G + +A     + +    +   M 
Sbjct: 244 EELPRDGWAVLNADDPLVWAMRDMTNA----RVFSYGLAPHATLWANQVESYGLDGIAMR 299

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V  Q + + +    IG H     L  + +  IL  +    I  L+          R R  
Sbjct: 300 VHYQDQVISMRLPLIGRHSIYLALAAMSVGLILGMEWPAMIAGLTD----PAAQARLRVV 355

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q   TLID++YNA P S  AA+ +L        GRR+A+LGDM E+G   +  H  + 
Sbjct: 356 AGQHATTLIDDTYNAAPISTLAALDLLGATP----GRRVAILGDMLELGSAEEEGHRQVG 411

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +      +   G   + + +A  +    S H+    T       ++  L+ GD +++
Sbjct: 412 QRAAQV-ADLLVTVGQRAIWIAEAARQAGMPSAHILVCMTNAEAIASVRPRLMPGDHILL 470

Query: 450 KSSNSCGFYRLINLLL 465
           K+S       ++  L 
Sbjct: 471 KASRGMALEEIVVALQ 486


>gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
 gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
          Length = 457

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 209/472 (44%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  AIATFTEKELPADQAH-----ILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +       
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE---- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A+  + +  +  +      +     +       G + A N ++   +  
Sbjct: 234 --VVRFG--DGAELTVSELTEYKDHLTFSTKFLDGQVT--LPVTGKYNATNAMVAAYVAK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLVLETFSAIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 345 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPL 404

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 405 GHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
 gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 205/463 (44%), Gaps = 22/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L  A+ G    +      +G+S DSR++     F A++G  +D HDF+    ++  
Sbjct: 4   TLAILQSALNG--ARMTADAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V  T        L++P   V D   AL ++A   R + K  +I +TGS GKTT KEM
Sbjct: 62  AAIVAET----VPDGLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +   L +        A  G++NN IGVPLTL R+       + ELGM+H GEI  L+ + 
Sbjct: 118 IAAILEAACGVDNYLATRGNFNNDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + ++      H    + +E +A     +  GL   G      DD F  L +  +   
Sbjct: 178 EPTVGLVNNAQREHQEFMASVEAVAQENGAVLAGLPADGIAVFPADDEFTPLWRQLAAQ- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + +FG S +AD +   +   +  S ME+    +   V     G H  +N L  +  
Sbjct: 237 --RKVLTFGFSDDADVRCS-YSANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIAC 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +    D   + L  F P  GR +R    L      +ID++YNANP S++AAI VL+Q
Sbjct: 294 ALAIGIATDAIARGLQAFAPVSGRLQR---KLAANGALVIDDTYNANPDSVRAAIDVLAQ 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +S      RI VLG+M E+G   + +H ++       +I +V   G        A     
Sbjct: 351 MSAP----RILVLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLTLGDLTRYAASAFGAGA 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  + ++++ L   +         V+VK S      R++  LL
Sbjct: 407 N--HYDSVEELNDALAGIFTADATVLVKGSRFMKMERVVQHLL 447


>gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 456

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 215/463 (46%), Gaps = 22/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 5   MTFSELVVPLDARLVGG--DCSFVGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  ++    +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 63  AVGALVEREVQGAV----LPQLVVLDTRKALAQLGAMNRNAFLDRPVAAVTGSSGKTTVK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 119 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++   G
Sbjct: 179 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---G 235

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F  S + AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 236 NRNVLTFALSDSAADVYASELSRDARGCPGFIINSPLGTARVQLNLLGTHNVSNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+ +L+
Sbjct: 296 AGCAMGVPLEGIVTGLNNVQPVKG---RAVAQIVSNGTRVIDDTYNANPASINAAVDILT 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A    
Sbjct: 353 GFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSAF--G 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H ++  +   L   + +       +++K S S     ++  L
Sbjct: 406 EHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 463

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 130/477 (27%), Positives = 214/477 (44%), Gaps = 23/477 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               D+ +   G  +       +  V  I+ DSR +   + F AIKG   DGHD+I  AV
Sbjct: 1   MKLRDIKEGTNGKILSGSTLDLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  +V++      I    +    VDD + AL KLA   R +  A  I ITGSVGKT+
Sbjct: 61  SRGAQALVLSRTPSIQIPES-VLALEVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTH 180
           TKE+    LS    T     SYNN IG+PLTL  +  +V+  + E+ G   +GEI +L  
Sbjct: 120 TKEVTASILSRKFVTLRSQKSYNNEIGLPLTLLGLTPEVEVAVLEMGGAYRMGEIEYLCS 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I V+  +  AH+     +E IA  K+E+   L   G   LN DD   + +   + 
Sbjct: 180 IAKPFIGVVIVVGYAHIGRMGSLERIAENKSELVRSLPSEGFAILNRDDHRVKAMADVTK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A     +  +G  + +  +               + +  +S +V    +G H    +L +
Sbjct: 240 A----HVVWYGLDEESYIRATDVVSEGLNGIRFVLHIGDRSYQVKAPLLGRHSVHTILAS 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  ++  +    + A+         G R          T++D++YNANP SM AA+++
Sbjct: 296 VAVAHVMGMEDQEIVHAIKEL----PPGLRLIVNKGINGSTILDDTYNANPTSMLAALNL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ I    EG RIAVLGDM E+G  ++  H+ +    +      ++  G     +     
Sbjct: 352 LNDI----EGHRIAVLGDMAELGHFTEEGHLKVGARAAEV-CDKLYTVGELAQIIARGAL 406

Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           ++      V   +        ++  L +GDVV+VK+S      +L+  L  +   +Q
Sbjct: 407 QAGMNPGDVVTLKDYQEAIDVLKRDLHEGDVVLVKASRIVSLDKLVAALTVQNEVVQ 463


>gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus ND03]
          Length = 457

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 209/472 (44%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  AIATFTEKELPADQAH-----ILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +       
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE---- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A+  + +  +  +      +     +       G + A N ++   +  
Sbjct: 234 --VVRFG--DGAELTVSELTEYKDHLTFSTKFLDGQVT--LPVTGKYNATNAMVAAYVAK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLVLETFSAIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 345 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPL 404

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 405 GHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK405]
          Length = 456

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 209/470 (44%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSEHPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKEGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLDQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSKLELTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREELTPADQILLKGSNSMNLAKLVEDLED 454


>gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 453

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 214/464 (46%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLSSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
 gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
          Length = 441

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 214/456 (46%), Gaps = 29/456 (6%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
              G  IG      V     DSR +   + F A+KG  +DGH F+  A ++GA  VVV  
Sbjct: 9   ITGGRLIG--ENCEVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVER 66

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           ++    G        V+D L AL  +A+  R   K  ++ I GS GKTTTKE++   LS+
Sbjct: 67  EVPVKEGKF---ALVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSA 123

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           + K      +YN+ IGVPL++A  P D DF + E+G S  G++  LT LV PH+ VIT+I
Sbjct: 124 VGKVCKTPKNYNSQIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSI 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL  F  ++++     EI EG+ +     L             +H   ++    FG 
Sbjct: 184 GEEHLETFGCLDDVILGNGEILEGMREDHVAVLP---------SYVAHCYRVERAVLFG- 233

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +      +  K   E     V    K  E+        + +N+L +LG++  L  D  T
Sbjct: 234 -EGTPLSAQDLKLTVEGVRFVV----KGKEIFLPVPSLALVENILCSLGVMEALGVDWTT 288

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +  L+ F P EGR +           T+ID+SYNANP S+K AI  LS +    EG RI
Sbjct: 289 LLDKLTTFRPVEGRFRTLSVM----GATIIDDSYNANPLSVKKAIESLSLM----EGHRI 340

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMD 431
           AVLGDM E+GE ++  H D+    +   I      G+ +  A  +A    +   Y E   
Sbjct: 341 AVLGDMLELGEKAEELHRDVGRWCAEKRIDECIFYGYWMRYAFHEAKRLGVSTIYLEDKG 400

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   ++  L +G +++VK S       +I  LL+E
Sbjct: 401 EVVQHLRKKLREGTIILVKGSRGMKMEEVITQLLQE 436


>gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 460

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 215/470 (45%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+  F  L   +     G      V  I+ D+R++   E F A+KGP++DGH FI  A
Sbjct: 1   MIPM-DFDWLANVLTTDYQGD--NQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            QKGA  V+V   +      + IP F V D   AL  +  A   +     IAITGSVGKT
Sbjct: 58  KQKGAIGVIVQHKV-----DVDIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    LS      A  G++NN IGVPLTL R+     F + ELG +HLGEI + T 
Sbjct: 113 TVKEMCAAILSVHGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +AV+  +A AHL  F  +  +A AK EIF+GL+  G   +N D  F +    K  
Sbjct: 173 MTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLDKLE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +K    F  ++  D         +  ++   +  + K + V     G H   N L+ 
Sbjct: 233 GRNVKC---FSTTEKLDIWAENITLDANARASFTLCTKNKQVPVTLALPGKHNISNALIA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S     ++    AL+     +G   R          T++D++YNAN  S+KAAI +
Sbjct: 290 AALTSEFDVTLEEIANALATMGDVKG---RVNLIEVSDLLTVVDDTYNANVKSVKAAIDL 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS +     G RI  LGDM E+GE ++ +H ++ E      I  ++  G       D   
Sbjct: 347 LSDMQ----GHRILALGDMGELGEDARKYHQEVGEYALEQGIDELFTLGVLSKYASDVFE 402

Query: 420 RSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +  + + +   IQ S   +     +VVK S S     L+  L+ 
Sbjct: 403 LPNR--HFSSREQMQQKIQESINKVNKKTTIVVKGSRSSRMELLVTDLVN 450


>gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 456

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 212/463 (45%), Gaps = 22/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 5   MTFSELVVPLDSRLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 63  AVGALVEREVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 119 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++   G
Sbjct: 179 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---G 235

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F      AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 236 NRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+ +L+
Sbjct: 296 ASCAMGVPLEGIVTGLNNVQPVKG---RAVAQIASNGTRVIDDTYNANPASINAAVDILT 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A    
Sbjct: 353 GFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSAF--G 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H ++  +   L   + +       +++K S S     ++  L
Sbjct: 406 EHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 456

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 214/463 (46%), Gaps = 22/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +LL  +    +G       +G+S DSR I   + F A+ GP +DGH+++     KG
Sbjct: 5   MTFAELLVPLDARRVGG--DCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  +    +   ++P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 63  AVGALVERE----VEGATLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGKTTVK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 119 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLTK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G ++I  AK EI EGL+ TGT  LN +D  F + + ++   G
Sbjct: 179 PHVAMITNAGSAHVGEFGGPDKIVEAKGEILEGLDATGTAVLNLEDKAFPIWRKRA---G 235

Query: 244 IKTIYSFGKSK-NADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F  +   AD       + +       +       +V  + +G H   N L    
Sbjct: 236 NRAVLTFALADTAADLYASDLSRDARGCPGFTLNSPLGKAQVQLNLLGAHNVTNALTAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+ VL+
Sbjct: 296 AACALGVSLEGIVTGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPASINAAVDVLT 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A    
Sbjct: 353 GFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSAF--G 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H ++  +   L   + +       +++K S S     ++  L
Sbjct: 406 EHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMD-9]
 gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus LMD-9]
          Length = 457

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 209/472 (44%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TLHEIAEVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  AIATFTEKELPADQAH-----ILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +       
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE---- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A+  + +  +  +      +     +       G + A N ++   +  
Sbjct: 234 --VVRFG--DGAELTVSELTEYKDHLTFSTKFLDGQVT--LPVTGKYNATNAMVAAYVAK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLVLETFSAIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 345 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPL 404

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 405 GHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
 gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
          Length = 460

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 209/475 (44%), Gaps = 35/475 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      +  +S D+R+I  +  F A+KG  +D HDF   A + GA 
Sbjct: 6   LSQLASVLNAELIGA--DVSIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122
            ++V+  +        +P   V D   AL  +    +     +     +A+TGS GKTT 
Sbjct: 64  ALLVSKPLPVE-----LPQLVVSDTRIALGMMGAWLKAQMTEKYGLQTVALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    L++  +  A  G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV
Sbjct: 119 KEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEISYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A+I  IA AHL  F  ++ +A AK EIFEGL + GT  +N + +   L +     L
Sbjct: 179 KPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQ---PLL 235

Query: 243 GIKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + +F    + AD+   + K  ++  +   +      +++     G H   N L   
Sbjct: 236 ADHQVLTFSTDSHQADYFAEEIKITTQGLACFTMCTPIGKIDINLALAGIHNVSNALAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A +      L      +G   R           LID++YNA+ A++KAAI VL
Sbjct: 296 ALTVSLGATLADVKAGLETMANVKG---RLDITEPCAGLRLIDDTYNASVAAVKAAIDVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      EG+R  + GDM E+GE S + H ++ E      +  V   G     + +    
Sbjct: 353 ASF----EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMTFGHSSAVVSEL--- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--------VVVVKSSNSCGFYRLINLLLEE 467
                +      L L ++  L             V+VK + S     +I  L E+
Sbjct: 406 -NQGQHFSDKGALILSLKQQLQQYSRQPDAETVTVLVKGARSSKMEDVIAALQED 459


>gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
 gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
          Length = 464

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 211/475 (44%), Gaps = 31/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q ++G  +G   +     IS D+R    +  FFA+KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++      +++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVERELA-----VNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               L  +     +     G+ NN +GVPLTL R+  +  F + ELG +H+GEI + T +
Sbjct: 119 TAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIAYTTEI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    ++   + +   
Sbjct: 179 AQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLA-HYYPEWQKEIGD 237

Query: 242 LGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +++    G+ K++  DF  +  +     S   +      +E+    +G H   N L  
Sbjct: 238 HELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSNALAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + AD+      L      +GR        N      ID+SYNAN  SMK+A+SV
Sbjct: 298 TALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKSAVSV 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q        RI V GDM E+G+ S + H ++A+ +    +  V   G     +     
Sbjct: 355 LKQYPAF----RIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS---- 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                H+      +  F+   ++         V++ K S S     +I  L   F
Sbjct: 407 -GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASLCRSF 460


>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
 gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
          Length = 453

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 213/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
 gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
          Length = 464

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 142/478 (29%), Positives = 219/478 (45%), Gaps = 26/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  +L        IG      V  +S D+R    +  FFA+KG ++D HD++  A
Sbjct: 1   MIKLST-KELADIFSARLIG-AKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV  +       + +P   V D   AL +LA   R++     IAITGS GKT
Sbjct: 59  VEQGCSAVVVEREC-----DVDVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  + +         G++NN IGVPLTL R+     F + ELG +H GEI 
Sbjct: 114 TVKEMTASILQKVAQDPDAVLFTQGNFNNDIGVPLTLLRLESKHKFAVIELGANHQGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   LV+P +A++  +A AHL  F  +E +A AK EI++GL + G   + Y+ S     K
Sbjct: 174 YTVDLVQPDVALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIMEYEHSVRYQKK 233

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQ 294
                +G      F    K +D+  ++ K     S   +  ++   +++    +G H   
Sbjct: 234 YWYEQIGNADTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKINLPYLGLHNVS 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +    +   L   ++     L      +GR        N     L+D++YNAN +S+K
Sbjct: 294 NAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPN---LLLLDDTYNANVSSLK 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +AI VL Q        RI  +GDM E+G  S S H  +A+   + N+  V   G     +
Sbjct: 351 SAIDVLRQYDKFF---RIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVI 407

Query: 415 KDALPRSIHVHYSETMD---GLFLFIQSSLVDGDVV-VVKSSNSCGFYRLINLLLEEF 468
             A      VH+S+  +    +   IQ  L    VV +VK +       +INL+ ++F
Sbjct: 408 SSACDG---VHFSDKTELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKF 462


>gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
 gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
          Length = 457

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 208/472 (44%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +   + +       +N I  DSR I   + F  +KG   DGH+FI  A + G
Sbjct: 4   TLHEIAKVVGAKNNVTAYEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+ A           V+D L A  KLA     ++   +IA+TGS GKTTTK+
Sbjct: 63  ALATFTEKDLPADQAH-----ILVEDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +       
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLE---- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG  + +D  + +  +  +            +       G + A N ++   +  
Sbjct: 234 --VVRFG--EGSDLTVSELTEYKDHLTFSTNFLDGQIT--LPVTGKYNATNAMVAAYVAK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 HWGVTEENIFSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLILETFSAIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 345 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAIDTVIFYGEDIADLSQLASQMFPI 404

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    R++  L  +
Sbjct: 405 GHVYYFKKTADEDQFDAMVKRIKESLGEHDQILLKGSNSMNLARVVEELQSK 456


>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
 gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
          Length = 453

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 211/465 (45%), Gaps = 23/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+ Q   G   G      V  +  DSR+  P + F A+KG H+D HDF+   + +
Sbjct: 1   MLMLSDVAQLAGGRLAGA--DAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V  D         + +  VDD   AL +LA   R R +  ++ ITGS GKTT K
Sbjct: 59  GAAGALVRQDFALP----GVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVK 114

Query: 124 EMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EMLT  L++        A  G++NN IG+PLTL  +     + + E+GM+H GEIR+LT 
Sbjct: 115 EMLTAILAAHAGRDTVLATAGNFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTG 174

Query: 181 LVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           L RP +A++     AHL   FSG  +IA AK+EIFEGL + G   +N DD          
Sbjct: 175 LARPRVALVNNALRAHLGGGFSGTADIARAKSEIFEGLAEDGVAVINADDPHA---AIFR 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A   + + SFG  + AD   R        +   +      + V     G H  +N L  
Sbjct: 232 AAAAGRRLLSFGLGE-ADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNVRNALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   +      L+ F    GR +R          TLID++YNANP SMKA I V
Sbjct: 291 AAAALALEVPLAAIAAGLAGFAGVRGRLQR---KHAGNGATLIDDTYNANPDSMKAGIDV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q        R  V+GD+ E+GE + + H ++        +  +   G        A  
Sbjct: 348 LLQALAP----RWFVMGDIGELGENAAALHAEVGAYARERGLDALLTLGDLSRHAAAAFG 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + +  + +T+D L  ++ S L     V+VK S      R++  L
Sbjct: 404 ATAN--HFDTLDALLSYLDSHLPADATVLVKGSRFMRMERVVEHL 446


>gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
 gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
          Length = 477

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 198/450 (44%), Gaps = 15/450 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI----PV 85
           + IDSR +     F A+ G   DGH F+      GA   VV+++  +  GS         
Sbjct: 32  VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD + A  +LA A R R    +I I GS GKTTTKEM+   LS+  K     G+YNN
Sbjct: 92  LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGNYNN 151

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++  D +  + E+G++H GE+ FL  + RP   ++T I   HL  F  ++ 
Sbjct: 152 HLGVPLTLFQLRRDTEMAVIEMGINHPGEMAFLASIARPTHGLLTNIGHEHLEFFGSLDG 211

Query: 206 IASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +A A+AE+F+ LE   GT F+N DD     L A   +L  K  Y     +   +   +  
Sbjct: 212 VAKAEAELFDYLEVSGGTAFVNLDDH---RLAAAGASLSRKICYGAVPGEPCAWWAEEVG 268

Query: 265 QCSEQ-SWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                     +  + G    V  + IG H   N +    + +      +     L    P
Sbjct: 269 SDRVGRIAFTLCSEAGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQIASGLGELMP 328

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G  +        G   +++++YNANP S++ A+  L+ +     GR++AV+GDM E+G
Sbjct: 329 ASGWKRMELLE--AGGVVVLNDTYNANPDSVRLALDTLASLD--CSGRKLAVIGDMLELG 384

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +   H  +   +    I      G    +           H+ ETMD L  F+   + 
Sbjct: 385 GNAALEHESIGNYIRQLPIDGCVTIGPLAGSCCQNAQERCLGHF-ETMDDLDAFLGDYVR 443

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            GD V+ K S           L++    I+
Sbjct: 444 PGDAVLFKGSRGMKLELAAEALVKRMTPIK 473


>gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 934

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 206/442 (46%), Gaps = 21/442 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            IS D+RSIA  + F A+KG  +DGH ++  A++ GA   VV         ++++P F +
Sbjct: 499 SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVV----EHKDTAVALPQFVL 554

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNN 145
            D   AL +++   R +    ++A+TGS GKTTTKEM+          + + A  G+ NN
Sbjct: 555 GDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRGNLNN 614

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLT+ R+       +FELGM+H GEI  L  + +P +A++      H      +E 
Sbjct: 615 DIGVPLTVLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVALVNNAQREHQEFMLTVEA 674

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A     + + L   G      DD++ +L    +   G +T+  FG S + D    +   
Sbjct: 675 VARENGTVIDMLPVDGIAVFPGDDAYSDLWAELA---GTRTVLRFGFSPDFDVYADQIHA 731

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +   +     S  +     G H  +N L            +++ ++ L  F+P  G
Sbjct: 732 EPTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSG 791

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R + +  A   G + LID++YNANP S++AAI VL+++    +G+R+ VLGDM E+G   
Sbjct: 792 RMQPHALA---GGYQLIDDTYNANPDSVRAAIDVLAEL----DGKRVLVLGDMGEVGANG 844

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + H ++        I  +   G   +    A           +++ L   + + +    
Sbjct: 845 DAMHAEVGAYAHERGIDVLLAFGTACVHAVQAFGAGGQS--FTSIEALNSRLLTEMPAH- 901

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
            ++VK S S    R++  L +E
Sbjct: 902 -ILVKGSRSTRMERVVRALEKE 922



 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 173/480 (36%), Gaps = 41/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    +++  +  H   + P+     + +D+R ++  + FFA  G   DG D+I  A
Sbjct: 1   MT-LMNAQEVISWLSRH---VSPKA---QLCLDTRQLSAGDVFFACVGLTGDGRDYIAQA 53

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           V+ GA  +V+   D  ++  ++ +PV  V D+ G L  +      R     +++A+TG+ 
Sbjct: 54  VEAGAAAIVMQADDRASATPAIDVPVLAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------------ARMPVDVDF 162
           GKT+  + L  AL++       IG+    +     L                        
Sbjct: 114 GKTSCVQWLAAALNAEGTPCGTIGTLGVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGA 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  L  S +G  +     VR  IA  T +   HL     ++    AK  +F      G 
Sbjct: 174 QVVALEASSIGLDQGRLDQVRIVIAAFTNLTHDHLDYHGTLDNYQRAKFSLFAWPGLRG- 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD   + L + +        YS      A  Q +            V  +  +++
Sbjct: 233 AVVNVDDPAGKQLVS-TLPPASTLAYSISGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQ 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG---FF 339
           ++   +G H   N+L+  G++  L  D+    + LS     EGR +        G     
Sbjct: 292 LLTRLVGEHNVANLLLVTGVLQQLGWDLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQ 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++   Y   P ++K A+  L  ++    G+ I V G     G   +S    +  +    
Sbjct: 352 AMVVVDYAHTPDALKRALLALRDVARVRGGKLICVFGC---GGSRDRSKRPMMGRIAVEL 408

Query: 400 NISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVV--KS 451
               V  +        L +   +   +       +D     + S       DVV++  K 
Sbjct: 409 ADEVVLTNDNPRLEEPLDIIAQIKSGMSTAARVELDRALAILSSIWAADAHDVVLLAGKG 468


>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           cholerae LMA3894-4]
          Length = 453

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 213/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
 gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
          Length = 452

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 209/469 (44%), Gaps = 26/469 (5%)

Query: 5   WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               ++   + G        +    +N IS DSR+I   + F A++G  +DGH F+   +
Sbjct: 1   MILREIPTILSGTFQKISQTLSDKSINKISTDSRTIQENDIFIALQGDKFDGHRFVDEVI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  ++VN ++        IP   V D L A  ++A   R   K  II ITGSVGKTT
Sbjct: 61  DKGAIALIVNHEVSVKSTK-EIPQIVVKDTLIAYQEIANWWRNHVKIPIIGITGSVGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   L      +    +YNN IGVP TL  +  + ++ + E+ M   GEI  L+ +
Sbjct: 120 TKEIIAAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I +IT +  AH+      + IA AK E+   + +     LN+DD   + L   +  
Sbjct: 180 ACPTIGIITNVGTAHIGRLGSRQAIAEAKCELLAEMPENSVAILNHDD---QRLVETAAT 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      ++G  +  D          E   + V    + M+      G H A N L  L 
Sbjct: 237 VWQGKTITYGL-EGGDITGE----LLENQILRV----EGMDFPLPLPGRHNALNYLAALA 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D  T +      +  +GR ++Y     +    L+DE+YNA   SMKAA+ +L 
Sbjct: 288 VTKELNLDW-TFLMEGVTVNLPQGRSQQYSL---KNDVILLDETYNAGLESMKAALQLLK 343

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
                   R +AVLG M E+ + S   H ++ E      I  +++        A+   + 
Sbjct: 344 DTP---GTRHLAVLGTMKELADASAELHREVGETAEKLAIDALFILVDDPQSQAITKGV- 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +I      T + L   ++  +  GD ++ K+SNS G  R++  +L++ 
Sbjct: 400 TTIETQSFPTHEQLIQRLREVIQPGDRILFKASNSVGLNRVVEAVLQQL 448


>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 456

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 144/462 (31%), Positives = 222/462 (48%), Gaps = 17/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                  +A  G  +G       +G+S DSRSIA  E F A++G ++DGHD++  A  +G
Sbjct: 1   MDLLAAARATAGKVLGA--NATFSGVSTDSRSIAAGELFVALRGENFDGHDYVAAAKARG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V TD    + +LS+P+  V +   +L  LA   R R    ++A+TGS GKTTTKE
Sbjct: 59  AAAAIVATDAAEGLQALSLPLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKE 118

Query: 125 MLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           M+   L +       A  G++NN IG+PLTL R+       I ELGM+H GEI +L  + 
Sbjct: 119 MIASILKAAYGEAVLATQGNFNNDIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A++T    AHL+    +E IA+ K  I+ GL++TG    N DD + +L +++   L
Sbjct: 179 RPTVALVTNAQRAHLAGMGSLEAIAAEKGSIYTGLDETGVAVFNADDPWAKLWRSQCRGL 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + +FG  + AD   + +     +S + +       +VV    G H A+N L     
Sbjct: 239 ---RMMTFGFEQAADVTGK-FHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      LS F   +GR +R           L+D++YNANP S++A I VL+ 
Sbjct: 295 ALAAGISLTAVQAGLSAFRGLKGRLQRRTALH---GAVLLDDTYNANPDSVRAGIDVLAA 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G++I VLGDM E+GE+S  FH ++        I  +   G              
Sbjct: 352 T----IGKKILVLGDMGEIGEMSAQFHDEIGGYAKSQGIDLLLALGEASALAAHNFGSGG 407

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             H+  ++D L   + + L     V+VK S      R+ + L
Sbjct: 408 EHHH--SIDRLVASLTAELTPETTVLVKGSRFMRMERVADAL 447


>gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
 gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
          Length = 455

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 212/469 (45%), Gaps = 30/469 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + H++ + +     +       +  I  DSR+I+  + F  +KG   DGH+FI  A   G
Sbjct: 4   SLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK+
Sbjct: 63  AIATISEKEIEGH------PYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 117 MIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A       
Sbjct: 177 RIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPAN------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG  +    Q+ + K+  E+  +  +      ++     G + A N ++   +  
Sbjct: 231 QMTIRFGHDQE--LQVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGK 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I 
Sbjct: 287 LLAVAEEDIVDALENLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +    
Sbjct: 344 NNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V++       +  D L   ++ +L + D +++K SNS    +++++L
Sbjct: 404 GKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452


>gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri DSM 4166]
          Length = 458

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 207/469 (44%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L   + G  +G       + +S DSR+I P + F A+ GP +DGH ++   
Sbjct: 1   MLEAMRLSELQLPLSGRLVGA--DASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +    +P   V D   AL +L    R   K  + AITGS GKT
Sbjct: 59  AAKGAVAALVARE----VEGAPLPQLVVADTRLALGRLGALNREAFKGPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           + KEML   L S        A  G+ NN +G PLTL  +  +    + ELG S +G+I +
Sbjct: 115 SVKEMLASILRSAHGHDAVLATRGNLNNDLGAPLTLLELSAEHRSAVIELGASRVGDIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              LVRP +++IT    AH+  F G E+I  AK EI +GL  TGT  LN DD  + +   
Sbjct: 175 TVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGLSATGTAVLNRDDKAYPIWAE 234

Query: 238 KSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQN 295
           +      K I SFG     ADF                +     ++ V  + +G H   N
Sbjct: 235 RVAG---KRIVSFGLDNPPADFSAGSIAYDQRGCPNFVLTGPLGNLRVQLNLLGRHNVAN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        L    +  +  L    P +G   R    +      LID+SYNANPAS+ A
Sbjct: 292 ALAAAAAAHALGITAEAVVAGLQGLQPVKG---RAVAQMLANGVRLIDDSYNANPASICA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+  +    GR I VLGDM E+GE ++  H D+    +   +  ++  G  +    
Sbjct: 349 AIDVLASFA----GRTILVLGDMGELGEWAEQGHRDVGAYAAG-KVDTLYAVGPLMAHAV 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            A  +     +      L   +++    G  +++K S S    ++++ L
Sbjct: 404 AAFGQGAR--HFPDQASLIESLRAEQGSGTTILIKGSRSAAMDKVVDAL 450


>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
 gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
          Length = 448

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 141/466 (30%), Positives = 212/466 (45%), Gaps = 28/466 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PL    ++L A   H  G +    V G++ D+RS+ PQE F A  G ++DGH F   AVQ
Sbjct: 6   PLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFAESAVQ 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V+  + A+      P   V D L A  +L    R + +  IIAITGSVGKTTT
Sbjct: 66  QGAIAAIVDHPIDAAT-----PQLVVPDTLVAYQRLGQWWRQQFQIPIIAITGSVGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+++  L +         +YNN IGVP TL  +  D D+ + E+GM   GEI  L+ + 
Sbjct: 121 KELISAVLGTAGSVLKTEANYNNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAELSQIA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I VIT +  AH+      E IA AK E+   +       LN D+S   LL   +  +
Sbjct: 181 QPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQMPAESLAVLNADNS---LLIETAQTV 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 ++G                +    +  LQ           G H A N L  L I
Sbjct: 238 WSGAQVTYGLDSG----------DLQGQLADQTLQVADHSFPLPLPGAHNALNYLAALAI 287

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D+    + +S+    E    R R         ++DE+YNA   SM+AA+ +L+Q
Sbjct: 288 AQHLHLDLAPLQQGISL----ELPSGRARKLTLPNDVVVLDETYNAGLESMQAALHLLAQ 343

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPR 420
                  RRIAVLG M E+GE +   H  +  ++   NI  + +   G    AL  A   
Sbjct: 344 TPGE---RRIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLILDQGPEGTALA-AGTT 399

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++          L  ++   +  GD ++ K+S+S G  R+++   +
Sbjct: 400 TVPTEQFAEHQALMDYLDQHIQPGDRLLCKASHSVGLDRIVDHFTQ 445


>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
 gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
          Length = 453

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 213/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVQRELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
 gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
          Length = 453

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 213/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVERELDAECS-----QLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      + V    +G H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +    + L+     +G   R   A  +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIGQGLAHLSKVKG---RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 463

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 208/471 (44%), Gaps = 19/471 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  ++L+  +G   G    G  V  +  DSR I P + F A+ G   DGHDF+  A  
Sbjct: 1   MLTLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V+   V  +     P+  V D +  L  LA   R      ++ ITGS+GK++T
Sbjct: 61  RGAVAALVDRAHVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTHL 181
           KE++    S   +      S+NN IG+PL+L  +  D +  + E+ G    GEI  L  +
Sbjct: 121 KEVVWSVASQRFRAIRSQRSFNNEIGLPLSLMEIGSDTEVVVLEIGGAYAPGEISRLAEI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I V+T ++ +HL+    +E IA+ KAE+   L + G   LN DD    L+  K   
Sbjct: 181 ARPTIGVVTNVSHSHLARMGSLEAIAATKAELPASLPEDGVAVLNGDDLRVRLMADKCRC 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                +  +G + + + +    +    +    ++ + G    V    +G H    +L  +
Sbjct: 241 ----RVIRYGLAPDCEVRAENVESHGLDGISFDLLVDGGRHHVHVPLLGQHSVHTVLAGV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   V+  +  L           R       G  TLID++YNANP S   +++ L
Sbjct: 297 SVGLALGMSVEETLPGLRD----PSIQLRLLVVPAIGGATLIDDTYNANPTS---SLAAL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + ++     RRIA  GDM E+G   +  H  + +  +   +  ++  G     + D    
Sbjct: 350 NLLAELPARRRIAAFGDMLELGSYEEEGHRIVGKRAAAV-VDRLFTMGPRARIIADEAVA 408

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S      V   +T   L   ++ ++ +GDVV+VK S       ++  L + 
Sbjct: 409 SGLAPDAVVAVDTKQDLIDALKETMREGDVVLVKGSRGIQLEHVVAALRDR 459


>gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 458

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 205/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      +N I ID++ I P   F A+ G  +D H FI  A
Sbjct: 1   MISL-SLKKIALITNGTLYGA--DLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++K     V   ++        +P   V++   AL ++A   R ++KA I+AITGS GKT
Sbjct: 58  LKKKCAAFVTQKNI-----KPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T + I + NN+IGVP+TL ++  +  +G+ ELG S  GEI + ++
Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  AHL  F  +  ++ AK+EIF GL+   T+ +N D   F   K    
Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIK 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I   +S  K K ++F     K     +   +      + +    +GY    N L   
Sbjct: 233 NSNIL-FFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +                 KR    + +    LID++YN+N +SM +AI VL
Sbjct: 292 AFSFALKIPLKKIKIG---LLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V GDM E+GE S  +H  +    +   I+ ++  G     +      
Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
             H         L  ++++         ++VK S S    +++  L++E
Sbjct: 405 GKHFL---NKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450


>gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
 gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
          Length = 455

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 212/469 (45%), Gaps = 30/469 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + H++ + +     +       +  I  DSR+I+  + F  +KG   DGH+FI  A   G
Sbjct: 4   SLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK+
Sbjct: 63  AIATISEKEIEGH------PYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 117 MIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A       
Sbjct: 177 RIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPAN------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG  +    Q+ + K+  E+  +  +      ++     G + A N ++   +  
Sbjct: 231 QMTIRFGHDQE--LQVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGK 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I 
Sbjct: 287 LLAVAEEDIVDALENLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +    
Sbjct: 344 NNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V++       +  D L   ++ +L + D +++K SNS    +++++L
Sbjct: 404 GKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452


>gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) [imported] - Buchnera sp. (strain APS)
 gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 455

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 205/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      +N I ID++ I P   F A+ G  +D H FI  A
Sbjct: 1   MISL-SLKKIALITNGTLYGA--DLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++K     V   ++        +P   V++   AL ++A   R ++KA I+AITGS GKT
Sbjct: 58  LKKKCAAFVTQKNI-----KPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T + I + NN+IGVP+TL ++  +  +G+ ELG S  GEI + ++
Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  AHL  F  +  ++ AK+EIF GL+   T+ +N D   F   K    
Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIK 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I   +S  K K ++F     K     +   +      + +    +GY    N L   
Sbjct: 233 NSNIL-FFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +                 KR    + +    LID++YN+N +SM +AI VL
Sbjct: 292 AFSFALKIPLKKIKIG---LLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V GDM E+GE S  +H  +    +   I+ ++  G     +      
Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
             H         L  ++++         ++VK S S    +++  L++E
Sbjct: 405 GKHFL---NKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450


>gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 466

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/480 (25%), Positives = 206/480 (42%), Gaps = 30/480 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + + +    IG   +  V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-QQIAEILNAKLIG-NGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV  +    I    +P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGCVAVVVERECECEID---VPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 115

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +    ++     G+ NN +GVP+TL R+     + + ELG +H+GEI 
Sbjct: 116 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL++ G   +N    ++   +
Sbjct: 176 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLA-FYYPQWQ 234

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +  +  +++    G   +  AD+     +     S   +      + +    +G H   
Sbjct: 235 KEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVS 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +GR    +          ID+SYNAN  SMK
Sbjct: 295 NALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDSYNANVDSMK 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +AISVL     +    RI  +GDM E+GE S   H ++A+      +  +   G     +
Sbjct: 352 SAISVLENYPAY----RIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVI 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                     H+      +  F+   ++         V++ K S S     +I+ L + F
Sbjct: 408 SQQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 462


>gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 456

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 212/463 (45%), Gaps = 22/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 5   MTFRELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 63  AVGALVEREVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 119 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++   G
Sbjct: 179 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---G 235

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + I +F      AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 236 NRNILTFALTDSAADVYASELSRDARGCPAFNLNSPLGTARVQLNLLGTHNVSNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+ +L+
Sbjct: 296 AGCAMGVPLEGIVTGLNNVQPVKG---RAVAQIASNGTRVIDDTYNANPASINAAVDILT 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A    
Sbjct: 353 GFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSAF--G 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H ++  +   L   + +       +++K S S     ++  L
Sbjct: 406 EHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
 gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
          Length = 458

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 206/469 (43%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L   + G  +G       + +S DSR+I P + F A+ GP +DGH ++   
Sbjct: 1   MLEAMRLSELQLPLSGRLVGA--DASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +    +P   V D   AL +L    R   K  + AITGS GKT
Sbjct: 59  AAKGAVAALVARE----VEGAPLPQLVVADTRLALGRLGALNREAFKGPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           + KEML   L S        A  G+ NN +G PLTL  +  +    + ELG S +G+I +
Sbjct: 115 SVKEMLASILRSAHGHDAVLATRGNLNNDLGAPLTLLELSAEHRSAVIELGASRVGDIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              LVRP +++IT    AH+  F G E+I  AK EI +GL  TGT  LN DD    +   
Sbjct: 175 TVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGLSATGTAVLNRDDKACPIWAE 234

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQN 295
           +      K I SFG     ADF                +     S+ V  + +G H   N
Sbjct: 235 RVAG---KRIVSFGLDNPLADFSAGSIAYDQRGCPNFVLTGPLGSLRVQLNLLGRHNVAN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        L    +  +  L    P +G   R    +      LID+SYNANPAS+ A
Sbjct: 292 ALAAAAAAHALGITAEAVVAGLQGLQPVKG---RAVAQMLANGVRLIDDSYNANPASICA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+  +    GR I VLGDM E+GE ++  H D+    +   +  ++  G  +    
Sbjct: 349 AIDVLASFA----GRTILVLGDMGELGEWAEQGHRDVGAYAAG-KVDTLYAVGPLMAHAV 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            A  +     +      L   +++    G  +++K S S    ++++ L
Sbjct: 404 AAFGQGAR--HFPDQASLIESLRAEQGSGTTILIKGSRSAAMDKVVDAL 450


>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 458

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 196/471 (41%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +  A  G      P   V G++ DSR   P + F A+ G   DGHDF   A
Sbjct: 1   MQPL-SLAQIATATGGRVTDADPATQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
           V+ GA  V+           L +P   V+D L AL   A A     +   +IA+TGS GK
Sbjct: 60  VEAGAVAVLAARP-------LGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   L     T    GS+NN IG+PLT      D    + E+G    G I +LT
Sbjct: 113 TSTKDLIAQVLDRAGATVFTQGSFNNEIGLPLTALEATADTRHLVVEMGARGQGHIAYLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLK 236
            +  P I  +  +  AH   F G +  A AK E+ E L    + G   LN DD     + 
Sbjct: 173 GITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMS 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A++ A     + +FG  + AD             +   +        V    +G H   N
Sbjct: 233 ARTKA----EVVTFGVERAADVYATGVALDGRGRASFTLHTPAGQAPVRLQVVGEHQVPN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +      DV+      ++         R R        T++D++YNAN  S  A
Sbjct: 289 ALAAAAVAGAAGMDVEQI--GGALTAAVPVSEGRMRVTERPDGVTVVDDAYNANTDSTSA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLAL 414
           A+  L+ +     GR IA+LG+M E+G+ S+  H  +  + +   +  +   G     AL
Sbjct: 347 ALRALAHLGRESGGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVGRAEAHAL 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLL 464
            D       V      D    +++   L  GDVV+VK +N+     L + L
Sbjct: 407 ADEYGPGGQV--VADRDAAGEWLERYGLRAGDVVLVKGANALKLGELADAL 455


>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
 gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
          Length = 445

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 225/471 (47%), Gaps = 35/471 (7%)

Query: 1   MNPLWTFHDLLQA-IQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T  DLLQA +QG  H +G+     V  +  DSR + P   F A++G  +DGHDFI
Sbjct: 1   MLTLQTVADLLQAPLQGDPHLLGLP----VQALCTDSRRLQPGSVFVALRGERFDGHDFI 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA  V+    +         P F V D L A  ++A A R +    ++AITGS 
Sbjct: 57  PQALSKGAVAVISQRPVEG-------PHFQVPDTLTAYQRIARAWREQFSIPVVAITGSA 109

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML  ALS          ++NN IGV  TL R+  +  F + E+ M   GEIR 
Sbjct: 110 GKTTTKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRR 169

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP  A+IT I  AH+      E IA+AK E+ + L   G   LN +D    LL A
Sbjct: 170 LAQMARPTHALITHIGTAHIGRLGSREAIAAAKCELLQELG-QGIAVLNGEDP---LLLA 225

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + +L      ++G ++         +   +     V ++G ++       G H A N +
Sbjct: 226 TAASLWSGKTLTYGLAQG------DLRGEWDPQAQTVTVEGLTLP--VPLPGRHHALNWM 277

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V  L  + +   + L +  P EGR +  + A   G   + DE+YNA+P +M AA+
Sbjct: 278 GVLAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLA---GDVEIWDETYNASPEAMIAAL 334

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALK 415
            +L+Q +     RR A+LG M E+GE +   + ++    +   +  VWL      +  L 
Sbjct: 335 HLLAQTA---GKRRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLDPDGEMQPLV 391

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           D  P +  V   E    L   +Q  +  GD ++ K++ +    R+++  L+
Sbjct: 392 DEKP-AAEVERFEEASALVEGLQQQVRAGDRLLFKAARAVELERVLHRFLQ 441


>gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
 gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
          Length = 457

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 209/472 (44%), Gaps = 29/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   G
Sbjct: 4   TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  AIATFTEKELPADQAH-----ILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKD 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +P
Sbjct: 118 MIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  AHL  F   ++IA  K ++ +G+     + +  D    +L          
Sbjct: 178 KTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCD-PIVDLFL-----PSN 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A+  + +  +  +      +     +       G + A N ++   +  
Sbjct: 232 LEVVRFG--DGAELTVSELTEYKDHLTFSTKFLDGQVT--LPVTGKYNATNAMVAAYVAK 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I 
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKAA---NGADILSDVYNANPTAMKLVLETFSAIP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +    
Sbjct: 345 KNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPL 404

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 405 GHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
 gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
          Length = 453

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 211/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    +G      ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLVGA--DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   A+ +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVQRELEADCS-----QLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  I+ +  AK EI++GL +     +N D +  E  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      ++V    IG H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFILVTPIGEVDVELGIIGQHNVGNALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+     +G   R      +    LID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEVRHGLAHLSKVKG---RVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
 gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
          Length = 457

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 208/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVEG------YPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSKLAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + AD ++    +  +    +    G++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGADLEVTDLIERKDSLTFKANFLGQALD--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIL 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
 gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
          Length = 453

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 209/471 (44%), Gaps = 31/471 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I + P    N +  DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             + +       S  SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK+
Sbjct: 63  CVVTL-------SEVSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P
Sbjct: 116 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VIT    AHL  F   EEIA  K +I +G+E    + +       + L         
Sbjct: 176 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPA-YPIADKLL-----PSH 229

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG  + AD Q+    +  +     V      +       G + A N ++   +  
Sbjct: 230 VDLIRFG--EQADLQVTSLVESKDSLTFTVNFMDGDI--FLPVTGKYNATNAMVASYVGK 285

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +    AL+  +    R +  + A       ++ + YNANP +M+  +   S I 
Sbjct: 286 TLGVSNEAIKSALASLNLTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFSSIP 342

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 343 ANEGGKKIAVLADMKELGSQSVELHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFPI 402

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V++       +    L   ++  L   D ++ K SNS    +++  + +
Sbjct: 403 GKVYFFRKNAEQDQFGDLVKQVKEVLGGKDQILFKGSNSMNLGKVVEAVEK 453


>gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK353]
          Length = 456

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 207/470 (44%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +  +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSDRPVAEGA------YILVDDVLAAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    ++ S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVAEAAITQSFSELELTR---NRTEWKKASNGADILSDVYNANPTAMRLILETFSTIPS 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
 gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 498

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 183/474 (38%), Positives = 248/474 (52%), Gaps = 26/474 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW+  ++  A  G + G        G+ +DSR + P + F A+KG   DGH F+  A  
Sbjct: 35  ALWSAQEIAAATGGTASG---DFQCAGVEMDSRDVRPGDLFVALKGESMDGHRFVEKAFA 91

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V   +         P   V+D   AL  LA AAR R+ A  I +TGSVGKT  
Sbjct: 92  AGAAAALVERPVDW-------PHVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGV 144

Query: 123 KEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE +  AL  SS  + +  + SYNNH+GVPL+LARMP    +G+FE+GM+H GEI  LT 
Sbjct: 145 KEAIFAALEKSSRGQAHRSVRSYNNHVGVPLSLARMPARSRYGVFEMGMNHAGEIAGLTD 204

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VRPH+AVITTIAPAH+ N   IE IA AKAEIFEGL K GT  +  D   +E L+A + 
Sbjct: 205 HVRPHVAVITTIAPAHIENLGSIEAIADAKAEIFEGLVKGGTAVIPADSEQYEQLRASAE 264

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G+ TI SFG++ +AD +L       +  S +  Q++   +       G H   N L  
Sbjct: 265 KRGV-TIVSFGRADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAV 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V     D+  A  AL+     +GRG R+  A+  G   LIDESYNANPASM+A +  
Sbjct: 324 LAAVQAAGGDLGAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASMRATLRQ 383

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q       RRIAVLG M E+G+    FH  LAE +   ++ +  L G  +LAL   L 
Sbjct: 384 LGQTPAT---RRIAVLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGDEMLALARHLG 440

Query: 420 RSIH--------VHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLL 464
           ++            + +        +Q   L  GD ++VK SNS G  +L++  
Sbjct: 441 KAGSGTLGKTPAFAHCDGPAEAIAALQEYGLTAGDAILVKGSNSIGLGKLVDHF 494


>gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum GMI1000]
 gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum GMI1000]
          Length = 482

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/474 (26%), Positives = 202/474 (42%), Gaps = 22/474 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D    + G  +   P   +  ++ DSR++ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMHATDAAAWMAGAHLVG-PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+   V       + V  V D   AL +LA   R R    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPVGIPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +         A  G+ NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAA 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236
           + +P +A+I      H      +E +A+  A +   L   G      D      +  L +
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A   A G + +  FG    A          ++   ++V   G         +G H A+N 
Sbjct: 247 A---AAGTRRVLDFGIEGGA--VSAAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L             +   +ALS F P +GR +R           +ID++YNANP S++AA
Sbjct: 302 LAATACALAAGIAPEVIAQALSAFAPVKGRLQR---KPGHHGGLVIDDTYNANPDSVRAA 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + +
Sbjct: 359 IDALATLPAP----RWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELARHMVE 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 415 AFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
 gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 176/472 (37%), Positives = 254/472 (53%), Gaps = 10/472 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           PLWT  +++ A      G        +  V G+S D+RS+A  + F A+ G   DGHDF 
Sbjct: 5   PLWTVREIIAATGAALRGAGEGETLGERPVYGLSFDTRSLAKGDLFIALSGAR-DGHDFA 63

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A  KGA   ++      +  S ++P   VDD L AL  LA AAR R    ++A+TGSV
Sbjct: 64  QAAADKGAAAALLT--HRPADLSEALPGLMVDDPLRALEDLARAARQRCFGALVAVTGSV 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML  ALS + + +A   S+NNHIGVP++LA +P    FG+FE+GM+H GEI  
Sbjct: 122 GKTTTKEMLRAALSPLGEVHAAAKSFNNHIGVPISLASLPQQAAFGVFEIGMNHAGEITP 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  LVRPH+A+IT++A  HL NFS ++ IA AKAEI  G+ + G   L  D+ ++E L +
Sbjct: 182 LVDLVRPHVAIITSVAAVHLENFSSVDGIADAKAEILSGIRRGGAAVLPSDNPYYERLVS 241

Query: 238 KSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           ++   G++ I  FG    A               S  E+ + G+   +     G H   N
Sbjct: 242 RARECGVERIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGERHVLELGVPGTHQVSN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  +   + L  D+++ I+ L+ F    GRG R+   +      ++DESYNANP SM +
Sbjct: 302 ALAVIAAGAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNANPTSMAS 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L +  P   GRR+AVLG+M E+G  S + H  LA  +     + VWL+G  +  L+
Sbjct: 362 ALAQLGETEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIEDAGTARVWLAGSGMAPLR 421

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           DALP      ++     L   +  SL  GDVV+ K SN+ G   L+   L +
Sbjct: 422 DALPADRVAEWAPKAPDLLSNLVDSLEQGDVVLFKGSNAAGIGALLEAFLAK 473


>gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 471

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 134/479 (27%), Positives = 204/479 (42%), Gaps = 30/479 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G S  I  P   V G + IDSR++ P   F A +G   DGHD+  
Sbjct: 1   MIAL-SLAEIAEIVGGQSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   L +P   VDDV  AL +LA     R    ++A+TGS G
Sbjct: 60  -------QAVAAGAAAVLATRPLGVPAIVVDDVQSALGRLARFVVERLGTKVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT  R   + +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQRKGPTVWTPGSLNNEIGLPLTALRATEETEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK----TGTIFLNYDDSFFEL 234
           T L  P I ++  +  AH+  F G E+IA AK E+ E L       G   LN DD     
Sbjct: 173 TELTPPRIGLVLNVGTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRA 232

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMA 293
           + +++ A     +  FG++ +A  +    +          +       +V     G H  
Sbjct: 233 MASRTKA----RVLLFGEADDAAVRAENVRLTELGQPTFTLHTPTGCSDVTMRLYGEHHV 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   L         ALS          R          T+++++YNANP SM
Sbjct: 289 SNALAAAAVAHELDMSASEIALALSEADTLSRW--RMEVTERPDGVTVVNDAYNANPESM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
           +AA+   +  +     R  AVLG M E+G+ +   H  +  +    N+  +   G     
Sbjct: 347 RAALR--ALAAMGKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKLVAVGGREAS 404

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + A  +       VH S+        ++  L  GDVV+VK+S S G  R+   LLE
Sbjct: 405 WLQLGAYNEGSWGEESVHVSD-AQAAVDLLRRELRPGDVVLVKASRSVGLERIAQALLE 462


>gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc fallax KCTC 3537]
          Length = 451

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 140/467 (29%), Positives = 225/467 (48%), Gaps = 25/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + +     G      ++G++ DSR +   + F A+   + DGHD+I +A+  GA
Sbjct: 4   TLEKLAEVLNAPFQGKD-SVAISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENALANGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V++           P   VDD L A+ KL    R +    ++AITGS GKTTTK+M
Sbjct: 62  HAVLVDSQHQLKEDW---PAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                +   +T+    +YNN IGVP+TL  MP   +  I ELGM   G++  L+HLV P 
Sbjct: 119 AAEIANQQYRTFKTPENYNNEIGVPMTLLSMPESTEVLIVELGMDRPGQLTVLSHLVEPD 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+  F     IA AK EI  GL+  GT+ +  D+     L  +  +   +
Sbjct: 179 IAIITMIGEAHIEFFKTRRNIAKAKLEIINGLKAEGTLIIPNDEP----LLTQEISHIEQ 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG   +AD         + QS   +  Q    +     +G +   N L  +   ++
Sbjct: 235 HVKTFGTI-DADVNATDISVENNQSQFNINQQ----KFAIPMLGRYNIMNALAAITAGNL 289

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D+  A KAL  F   +    R          T+I + YN+NP ++KA ++ L  +S 
Sbjct: 290 LHIDLKNAQKALLDFDLTK---NRTEILHTTHGVTIISDVYNSNPTAVKAVLATL--VSR 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRS--- 421
             +G+R  VLGDM E+G+ +   H  LAE +   +I  V+L G  +   L   L +    
Sbjct: 345 EVQGKRYVVLGDMLELGQQAGIMHAGLAESVQESHIDGVYLVGELMRKHLYPILQKHFDQ 404

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +H +  + +D L   +      GDV+++K+S+     R+++ L++
Sbjct: 405 TQLHQYAKDQLDDLVSDLNKLGQQGDVMLLKASHGIHLERVVDELMK 451


>gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/480 (26%), Positives = 214/480 (44%), Gaps = 29/480 (6%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +  L T      A  + G          +N +  DSR++ P   F A++G  +D HDF+ 
Sbjct: 10  LEWLRTAEAAASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLD 69

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
               +GA  VVV          L++P   V D   AL ++A   R++ +  +I +TGS G
Sbjct: 70  AVADQGAAAVVVER----VPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNG 125

Query: 119 KTTTKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT KEM+   L++           G++NN IGVPLTL R+       + E+GM+H GEI
Sbjct: 126 KTTVKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEI 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L+ +  P + ++      H    + +E +A     +   L   G      DD F  L 
Sbjct: 186 AVLSRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDDFTPLW 245

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGY 290
           + ++   G + + SFG S  AD     ++  +  S ++V ++G        +V    +G 
Sbjct: 246 REEA---GARRVLSFGLSAQADVSAS-YQATAFGSTLQVAVKGLAVPPAQFKVELAAVGE 301

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N L            ++  ++ L  F P  GR +R      +    +ID++YNANP
Sbjct: 302 HNVRNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEA---RSGALVIDDTYNANP 358

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF- 409
            S++AAI VL+ I+    G R+ VLGDM E+G+    FH ++        I   +  G  
Sbjct: 359 DSVRAAIDVLAAIA----GPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGEL 414

Query: 410 --HVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             H +    A P+ +    + + +  L   ++ +   G  V+VK S      R++  L+ 
Sbjct: 415 TKHAVTAYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVN 474


>gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316]
 gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
 gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
          Length = 455

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 212/469 (45%), Gaps = 30/469 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + H++ + +     +       +  I  DSR+I+  + F  +KG   DGH+FI  A   G
Sbjct: 4   SLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK+
Sbjct: 63  AIATISEKEIEGH------PYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  I E+G  HLG+I  L+ + +P
Sbjct: 117 MIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A       
Sbjct: 177 RIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPAN------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG  +    Q+ + K+  E+  +  +      ++     G + A N ++   +  
Sbjct: 231 QMTIRFGHDQE--LQVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGK 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I 
Sbjct: 287 LLAVAEEDIVDALENLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +    
Sbjct: 344 NNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V++       +  D L   ++ +L + D +++K SNS    +++++L
Sbjct: 404 GKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452


>gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK115]
          Length = 456

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 205/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSEHPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L   ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTCLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIASYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
 gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
          Length = 560

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 130/554 (23%), Positives = 212/554 (38%), Gaps = 106/554 (19%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-------------VNGISIDSRSIAPQEAFFAIKGPHY 51
            T  ++  A  G  I    + +             + G+  D+R +     F    G   
Sbjct: 12  MTLANIAAACGGELIFPAEEPYANGRVKADYERLTIAGVVTDNRQVERDFLFIPFVGEKV 71

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D H FI  A ++GA   +   D+   +G    P   V+    AL  +A   R + K  ++
Sbjct: 72  DAHRFIPQAFEQGAACSLSEEDLTDPVG----PCIRVESSQRALMDIAAYYRRQLKLPLV 127

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            I GSVGKT+TKEM+   LS         G++NN IG+P+T+ ++       + E+G+ +
Sbjct: 128 GIIGSVGKTSTKEMVASVLSRHYSVLKTEGNFNNEIGMPMTVLKIRDHHQVAVVEMGIDN 187

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            G++  L  + RP+I VIT I  AHL      + I ++K E+F+ L    ++ LN DD  
Sbjct: 188 FGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGILASKTEVFDYLADGASVILNGDDDH 247

Query: 232 FELLKAKSHALGIKTIYSFGKSKN---------------------------------AD- 257
              ++      G   I  +G   +                                 AD 
Sbjct: 248 LNCIRRA----GGARIIFYGLGVDSSAAAREKDKDKLARLNGQIAEHLAKAKDRDGLADG 303

Query: 258 ------------------FQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                             ++         E             E V    G H   N L 
Sbjct: 304 CFDMSAAYTDQERLARETYRAENLSALGMEGMSASFITPEGDFEAVIPIPGEHNVYNALA 363

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L  D+D     +       GR          G  TLID+ YNANP+SM+A+++
Sbjct: 364 AAAVGQSLGLDLDEIKAGMETASTISGRAHFLHL----GGLTLIDDCYNANPSSMRASLA 419

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL++     +GRRIAVLGDM E+GE + + H +L E  +   I  ++ +G     +    
Sbjct: 420 VLARA----KGRRIAVLGDMGELGENAPAMHYELGERAAEEGIDMLYAAGALGREIARGA 475

Query: 419 PRS------------------------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +                        + ++     D L   +   L +GD V+VK+S+ 
Sbjct: 476 SDASLNRREEGAFFAEEGGGAHRREKPMEIYACPDRDALLADLLGRLKEGDTVLVKASHF 535

Query: 455 CGFYRLINLLLEEF 468
            GF  ++  + E +
Sbjct: 536 MGFEEVVKAIQESY 549


>gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
 gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
          Length = 449

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 213/469 (45%), Gaps = 28/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   +  ++        +    Q  ++ I  DSR +     F  + G   DGH+F   A
Sbjct: 1   MN--LSIKEVAALFG---VECADQTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA     +   +     L I    V D L A  KLA   + +    +IAITGS GKT
Sbjct: 55  QEKGAIAAFWSHPTIQPPEGLMI--IEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   KTY   G++NN IG+PLT+   P D +  + E+GM H GEI  L+H
Sbjct: 113 TTKDMVDAVVAQQFKTYKTQGNHNNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P +A IT I  AH+ N    E IA AK EI  GL+  G   +  D+       A+  
Sbjct: 173 LAQPDVAAITLIGEAHIENLGSREGIAKAKMEITAGLDPAGFFMIPADEPLLTPYLAEL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + + +FG  +    +    ++  EQ+   V             IG +  +N L+ +
Sbjct: 232 ---TQQVETFGLGEGN-LKGTIQEETQEQTAFTVA----DQVYTIPVIGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI   L  + +     L+ F   + R +  + A       ++ + YNANP +M   +   
Sbjct: 284 GIGRYLGIEEEKIKAGLADFQLTKNRTQWLKAA---NGAAILSDVYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     GRRIAVL DM E+G  S   H  +A+ L       ++L G  + ALK AL +
Sbjct: 341 RKLP--LTGRRIAVLADMLELGPDSAKMHAGMADHLDER-FDLIFLYGSEMQALKRALDQ 397

Query: 421 SI---HVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S     VH+   E    L   +Q  L   D +V+K SN  G   +I+ L
Sbjct: 398 SRLADRVHFFSKEEKAALITQLQKELQPTDSIVLKGSNGMGLVEVIDSL 446


>gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 456

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F      AD         +       +       +V  + +G H   N L
Sbjct: 235 ---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLGAHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+
Sbjct: 292 AAAAAACALGVTLEGIVAGLNNVQPVKG---RAVVQIASNGTRVIDDTYNANPASINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  S    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
 gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
          Length = 452

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 219/468 (46%), Gaps = 24/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       D+ +   G   G   +   + +  D+RS++P + F A+ G HYDG+ F+  A
Sbjct: 1   MISALLLSDIARETGGQLFG---EASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                 +      + +   + +IP   VDD   AL ++A   R R    ++A+TGS GKT
Sbjct: 58  -----VIAGAVAAITSEAVTAAIPSVKVDDTRFALGQIARLNRRRFSGPVVALTGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L    +  A   ++NN IGVPLTL  +     F + E+G SH+G+I +LT 
Sbjct: 113 TTKEMVARILCERGEVLATEANFNNEIGVPLTLLAIDPSHQFAVVEMGASHIGDIAYLTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P IAV+T     H+  F  IE +A  K EIFE L + G   +N D+ FF+    ++ 
Sbjct: 173 FAEPTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFENLPEGGVAIINQDEPFFQQWLQQA- 231

Query: 241 ALGIKTIYSFGK-SKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             G  ++ +F K   +A++       Q +  +  E+ L  +++ +    +G H   N + 
Sbjct: 232 --GKASVVTFSKYDTSANYYASNIHIQTNASTVFELHLAQQTITIKLALLGEHNVLNAVA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                    A VD   K L    P +GR K    A      T+ID++YNA+P S+ AAI 
Sbjct: 290 AAAAAMTAGATVDDVKKGLESVRPVDGRLK----ASADSNRTVIDDTYNASPGSVMAAID 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS  S    GRR  +LG M E+G L++  H D+A       I  + + G     + ++ 
Sbjct: 346 VLSGFS----GRRCLILGTMAELGGLAEKSHRDVASYARHKGIEELLVVGEFASLVSESF 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +      + +  L   +  SL    V++VK S S    R++  L  
Sbjct: 402 GAAC--LPFDDVQQLLDVLDESLHSS-VILVKGSRSAHMERVVEALKN 446


>gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1056]
          Length = 456

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLMAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++       E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKNSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPLG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
 gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
          Length = 456

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 128/476 (26%), Positives = 201/476 (42%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T H++   ++    I       +     DSR I P + F  +KG   DGHDFI  
Sbjct: 1   MN--LTLHEVAHLVRAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA        +         P   V+DVL A   LA A   ++K  + A+TGS GK
Sbjct: 58  AFENGAVATFSEKVVEGH------PYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   LS+   TY   G+YNN IG+P T+  MP   D  + E+G  HLG+I  L+
Sbjct: 112 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P  A++T I  AHL  F    EIA  K +I +G+ + G + +  D      L  K 
Sbjct: 172 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVNAYLPEK- 230

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + +  FG  +     + +  +  +          ++++      G + A N ++ 
Sbjct: 231 -----QKVVRFGPDEE--IFITELIERKDSLTFRANFLEEAID--LPVTGKYNATNAMIA 281

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             +            R           ++ + YNANP +M+  +  
Sbjct: 282 AYVALQEGVSEAAIRDSFETLQLTR---NRTEWKKAGNGADILSDVYNANPTAMRLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     
Sbjct: 339 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 398

Query: 420 RSI---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     HV+Y       +  + +   ++ SL + D +++K SNS    +L+  L  
Sbjct: 399 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 454


>gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 456

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 213/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F      AD         +       +       +V  + +G H   N L
Sbjct: 235 ---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLGAHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+
Sbjct: 292 AAAAAACALGVTLEGIVAGLNNVQPVKG---RAVVQIASNGTRVIDDTYNANPASINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
 gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
          Length = 455

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 137/472 (29%), Positives = 216/472 (45%), Gaps = 28/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       D      G  +   P    +G+SI+SR+IA  + F A+ G   DGH+F+   
Sbjct: 1   MINSLRLTDAAIRFGGTLLN--PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             + +GLVV + D       L +P + V+D   AL +LA   R     T+IA+TGS GKT
Sbjct: 59  TDRASGLVVSSADT-----DLPLPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K++++  L      +A  G+ NNHIGVPLTL  M  D DF + E+G S   EI +L  
Sbjct: 114 SVKDLISAILGGFGTVHATKGNLNNHIGVPLTLLDMQQDSDFAVIEMGASAGSEISYLCS 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I++I  +  AHL  F  +E IA+AK EI+ GL+  GT  LN D  +     A   
Sbjct: 174 IAKPQISLINNVQSAHLEGFGSVEGIAAAKGEIYSGLDTDGTAILNLDQPWQAEWMA--- 230

Query: 241 ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQG----KSMEVVHHGIGYHMAQ 294
            +G +   +F    + AD      +          + L      +S  V     G H   
Sbjct: 231 LIGDRECITFSVDDDCADISASDIELMESGCCRFTLHLFTDMSLESQVVNLAIPGRHSVS 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L          A ++  +   S     +   +R +         +ID+SYNA+P S++
Sbjct: 291 NALAAAACAVAAGASIEQIV---SGLEAAQSPARRLQAKDLAQGGQIIDDSYNASPESVR 347

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+       GRR+ VLGDM E+G  ++  H ++ +  S   I  ++  G    A 
Sbjct: 348 AAIDVLASRP----GRRVMVLGDMAELGADAEQLHSEVGDYASSAGIDQLYTLGNLSAAA 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLL 465
                     H+   ++ L   + + +   D  ++VK S S     ++++L+
Sbjct: 404 SAVFK----GHHFTDLESLKAPLFNEIEHSDLTLLVKGSRSSKMDLVVDMLV 451


>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
 gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
          Length = 451

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 208/445 (46%), Gaps = 23/445 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +N I+ D+R I   + F A+KG  +DGH FI +A+ KGA  V+V+ + V+ I S  I
Sbjct: 23  NQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAIAKGAIGVIVDHE-VSVISSKRI 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               V D L A  ++A   R +    II ITGSVGKTTTKE++   L    K +    +Y
Sbjct: 82  TQIIVKDTLIAYQEIANWWRNKLTIPIIGITGSVGKTTTKELIAAVLGVYGKVHKTQANY 141

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP TL  +  + D+ + E+ M   GEI  L+ + RP I +IT +  AH+      
Sbjct: 142 NNEIGVPKTLLSLTTNHDYAVIEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGSR 201

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK E+   + K     LN+DD   + L   +  +      ++G  +  D      
Sbjct: 202 EAIAEAKCELLAEMPKDSIAILNHDD---QRLMETAARIWQGKTITYGL-EGGDITGE-- 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               +   + V    + ++      G H A N L  L +   L  D +  +         
Sbjct: 256 --LLDNQILRV----EGIDFPLPLPGRHNALNYLAALAVTKQLNLDWN-LLTQGVTVDLP 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR ++Y  + N     L+DE+YNA   SMKAA+ +L         R +AVLG M E+GE
Sbjct: 309 KGRSQQYSLSNN---IVLLDETYNAGLESMKAALQLLKDTP---GKRHLAVLGTMKELGE 362

Query: 384 LSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            S   H ++  +     I  +++        A+   + ++I      T + L   +   +
Sbjct: 363 ASAQLHQEVGAMAEKLGIDGLYILVDDPEAQAITQGV-KTIETECFPTHEHLIERLTQVI 421

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466
             GD ++ K+SNS G  R++  + +
Sbjct: 422 QPGDRILFKASNSVGLNRVVEAVRD 446


>gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 484

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+     + +    ++     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 31  TIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 89

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 90  ATVTLSEKEVANH------PYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTKD 143

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 144 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 203

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 204 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIEDYL------PTD 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG    A+ ++    +  +    +    G++++      G + A N ++   +  
Sbjct: 258 KKVVRFG--SGAELEVTDLIERKDSLTFKANFLGQALD--LPVTGKYNATNAMIAAYVGL 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 314 QEGVSEEQIRQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  +   G  +  L     +    
Sbjct: 371 ANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLDTIIFYGEDIAELAQLASQMFPI 430

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 431 GHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 482


>gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thiomicrospira crunogena XCL-2]
 gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 474

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 218/476 (45%), Gaps = 26/476 (5%)

Query: 5   WTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           W   DL++A+ G   G            +S D+R++     + AIKG H+DGH FI  AV
Sbjct: 3   WNLADLVEAVNGVLAGELLGDEPVVFTSVSTDTRTLKSGALYIAIKGEHFDGHAFIGEAV 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKT 120
           ++GA  V+++  M        +P   VDD   A  + A   R +     ++ +TGS GKT
Sbjct: 63  RQGAVAVLISEPM-----ETVVPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK +L   LS   +  +  G+ NN  G+P TL  +    D+ + E+G +H+ EI +LT 
Sbjct: 118 TTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVKEIAYLTQ 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +AVIT  A AHL  F  +E +   K EI +G+ + G   LN D   FE    KS 
Sbjct: 178 IAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVCEGGKAVLNTDSPGFEYWIEKSQ 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----VHHGIGYHMAQNM 296
            LG+ ++ +FG+++ A+ Q+  + Q   Q    + L  +++          +G+H A N 
Sbjct: 238 QLGL-SVITFGQARFANVQVTDFTQAENQITFTLDLNWQNIRQAEVVTMPVLGFHNAMNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                    L          L  F    GR ++ +         LID+SYNANP+S+KAA
Sbjct: 297 AAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSKLPQG----LLIDDSYNANPSSVKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L Q+     G     LG M E+G  S++ H D+A       ++H+ L G     +  
Sbjct: 353 IDALVQLP----GPSAVCLGGMAELGAESEALHQDVAAFAKAKGVTHLLLFGEATQCMPT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
                    + E+ + L       +    +  V+VK S S    ++   +L    A
Sbjct: 409 VFGEG--AKWFESHEALAQEAVDLIQQDKIQNVLVKGSRSAKMEQVSQKVLARLEA 462


>gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
 gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
          Length = 486

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/476 (36%), Positives = 241/476 (50%), Gaps = 26/476 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW    +  A  G +         +G+ +DSR + P + F A+KG   DGH FI  A  
Sbjct: 22  ALWDAQSIASATGGTASHAFQA---SGVEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFA 78

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   + +  +         P   V D   AL+ LA AAR R  A  IA+TGSVGKT  
Sbjct: 79  KGAVAAITDRPVDF-------PHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGV 131

Query: 123 KEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE +  +L  +S    +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GEI  L+ 
Sbjct: 132 KEAIFASLDRASRGAAHRSVRSYNNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAPLSD 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VRPH+A+ITTIAPAH+ N   +E IA  KA+IF GL   GT  +  D  +   +   + 
Sbjct: 192 HVRPHVALITTIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAK 251

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           ALG+  + +FG+S++AD +L       +  S +   L    +       G H   N L  
Sbjct: 252 ALGV-NVVTFGRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGV 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  V     D+ +A  AL+     +GRG R+      G   L+DESYNANPASM+A +  
Sbjct: 311 IAAVRAAGGDLASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRA 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q   H   RR+AVLG M E+G+ +  FH  +AE L+   I HV L G  + AL   L 
Sbjct: 371 LGQTPAH---RRVAVLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELG 427

Query: 420 R--------SIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLE 466
           R        +      ++       ++   L  GD V+VK SNS G  RL+    +
Sbjct: 428 RMPANSLGFAPSFAQCDSPAEAIAALEEYGLTHGDAVLVKGSNSVGLGRLVQHFTK 483


>gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
 gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
          Length = 476

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 172/472 (36%), Positives = 243/472 (51%), Gaps = 17/472 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+  +   A  G   G      V+G+SID+R++   + F A++    DGH+F+  A+ K
Sbjct: 3   LWSAQEAAAATGGRVTG---DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQALAK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+       G    P+  V+DV   L  L  A R RS+A ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVSHVPEGVGGD--APLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L    +T+A   SYNNH GVPLTLARMPVD  F + E+GM+H GEI  L  + R
Sbjct: 117 EMLRDVLRHQGRTHAAEASYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEIAPLARMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVITT+A AHL  F  IE IA  KA IFEGLE  G   +N D +   +L+A++    
Sbjct: 177 PHVAVITTVAAAHLEAFEDIEGIAREKASIFEGLEPGGVAVINADIATAPILRAEAVRHA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I SFG ++ A  +L   +     +    +     +       G H A N L  L +V
Sbjct: 237 AR-ILSFGTARGAHHRLLNVELHDRVTVGHARAWRSPLVYKVGVPGRHFAMNALAVLAVV 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISV 359
            +L  D   A+  L+ + P  GRG R       A +     LID+++NANP SM AA+ V
Sbjct: 296 QVLGCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAALEV 355

Query: 360 LSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+   P         GRRIA+LGDM E+G    + H  LA++  +  I  +   G  + A
Sbjct: 356 LAAAQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEIHCVGPRMRA 415

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L + L       ++ T + L       +  GDVV+VK S       ++  L 
Sbjct: 416 LWEVLSEGRQGRWAATAEDLAAQAHRLIDAGDVVLVKGSKGSRVSLVVEALR 467


>gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 458

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 205/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      +N I ID++ I P   F A+ G  +D H FI  A
Sbjct: 1   MISL-SLKKIALITNGTLYGA--DLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++K     V   ++        +P   V++   AL ++A   R ++KA I+AITGS GKT
Sbjct: 58  LKKKCAAFVTQKNI-----KPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T + I + NN+IGVP+TL ++  +  +G+ ELG S  GEI + ++
Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  AHL  F  +  ++ AK+EIF GL+   T+ +N D   F   K    
Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIK 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I   +S  K K ++F     K     +   +      + +    +GY    N L   
Sbjct: 233 NSNIL-FFSIKKKKYSNFFCSNIKIHIHSTSFTMHTPCGKINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +                 KR    + +    LID++YN+N +SM +AI VL
Sbjct: 292 AFSFALKIPLKKIKIG---LLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V GDM E+GE S  +H  +    +   I+ ++  G     +      
Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
             H         L  ++++         ++VK S S    +++  L++E
Sbjct: 405 GKHFL---NKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450


>gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 475

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 222/488 (45%), Gaps = 34/488 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T  ++  A +G  +       P+  V+G+S  DSR + P   FFA  G   DGH 
Sbjct: 1   MIAL-TLSEIAAATRGRLLLEGTDATPRTVVDGLSTTDSREVVPGSIFFAKPGETTDGHL 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL----AVAARLRSKATII 111
           F+  A+  GA LVVV+ ++  +      P   V+D + AL +L        R      I+
Sbjct: 60  FVPQALDSGAALVVVDRELDVAG-----PQLVVEDTVVALGELAADVIARVRALGNLRIV 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK +L   L     T A   S+NN +G P+T+  +     + + E+  S 
Sbjct: 115 GITGSNGKTTTKNLLRAILEQSGPTIAPRASFNNEVGAPVTMLEVSERTQYLVAEMSASG 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  L  + RP I ++  +  AH   F GIE+  +AK E+   L ++    LN DD  
Sbjct: 175 IGEIARLVGMARPDIGIVLKVGLAHAGEFGGIEKTLAAKTEMVSDLLESDVAVLNLDDPR 234

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH 285
              +  K+ A     +  FG    A  +    +  S  +   ++L G       S  V  
Sbjct: 235 VASMADKTAA----HVLWFGLDDRAAVRASDIRSTSRGTSFVLRLPGADGGDAASRPVRF 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H +G H   N L        L   +D  +  L      E    R       G  T+I+++
Sbjct: 291 HVLGEHHVMNALAAAAAAHTLGIGIDRIVGGLEAVQRAERW--RMEVLGGAGGVTVINDA 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNA+P SM AA+  L+QI+  GE R IAVLG+M E+GE S   H  +  +     I  + 
Sbjct: 349 YNASPDSMSAALKTLAQIAGPGE-RTIAVLGEMSELGEFSGEEHDRVGLLAVRLGIDQLV 407

Query: 406 LSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           + G      H+ A+ +       + Y E+ D  +  ++ +L  GD V+VKSSNS G   L
Sbjct: 408 VVGPPARRMHITAINEGSWDGESL-YFESQDAAYDHLKETLRAGDTVLVKSSNSAGLRFL 466

Query: 461 INLLLEEF 468
            + L E F
Sbjct: 467 GDRLGELF 474


>gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
 gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
          Length = 451

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 173/467 (37%), Positives = 245/467 (52%), Gaps = 17/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  DL  A  G  +         G+SIDSR+ AP E F A+     DGHDF+  A
Sbjct: 1   MSGLWSARDLAVATNGTWLRGEADA--TGVSIDSRTTAPGELFVALADAR-DGHDFVPDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+V  D+ A       P   V+DV  AL +L    R RS+A ++A+TGSVGK+
Sbjct: 58  EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS+   T+A   S+NNHIGVPLTLAR+P + DF + E+GM+H GEI  L+ 
Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+ VIT I  AHL     +E IA  KAE+  G+   G   L     F   L  ++ 
Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPRG-PFLSRLARRAR 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + SFG    A+ +L + +  ++   +   +    +       G HMA N +  L
Sbjct: 231 --DGVRVVSFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L  D   A  AL  F P  GRG R R  ++    TL+DESYNA+  S++AA+ VL
Sbjct: 289 AAAAALGLDPVQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G+ +   H DLA+ +S      V+  G H+  + D LP 
Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLADAVSGV-ADLVFACGPHMRVMFDELPE 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++     L   ++++L  GDVV+VK S       ++  + ++
Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGSYGSRMRDVVAAIEDK 450


>gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116]
          Length = 454

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 216/468 (46%), Gaps = 23/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +     G  +G      +  +S D+RSI     F A+ G  +D HDF   AV+ GA
Sbjct: 5   TLSQIADITGGERVGN--DLSIESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +  ++  + +      D   AL ++A       +   +AITGS GKTT KEM
Sbjct: 63  GALLVQKRVNVNVPQVVV-----GDSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +           L  K
Sbjct: 178 IAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGGAKW---DEVLADK 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + +F +S  +ADF        +   +  ++ +    + +E+    IG H   N +    
Sbjct: 235 NVITFSQSNADADFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A ++     L   +  +G   R           LID+SYNA+  +MKAA+ +L+
Sbjct: 295 IALKMGATLEEIRSGLKHLNKVKG---RVEVEELSDKIKLIDDSYNASVPAMKAAVDLLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + + L   
Sbjct: 352 AFQ----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDG 406

Query: 422 IHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           IH   + E +D +   +  ++ +   ++VK +N    + +   L E +
Sbjct: 407 IHFETHQEMIDYIKQHLDQAVPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 457

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 214/463 (46%), Gaps = 15/463 (3%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + ++G  +       ++NG+SID+R+I   + +  I G  ++GH+FI  A+  GA
Sbjct: 6   LNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D    I ++  P   V+D L A+  LA A R +    II ITGS GKT+TK++
Sbjct: 66  TATLW--DKNQPIPNIDFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L ++ KT+  +G+ NNH+GVPLTL  M  + +  + E+GMS LGEI  L+ +    
Sbjct: 124 LFNILQTVYKTHKTLGNLNNHLGVPLTLLEMAENTEIAVIEMGMSGLGEIELLSKIASSD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT     H+++   +E I  AK EI EGL+  G      D     +   K      K
Sbjct: 184 VAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLFIYFGDSPPLRVGVEKLDLKQKK 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +++ D+ ++     +E  + E+ +   S  +    +G H   N    + +   
Sbjct: 244 --VTFGINRDNDYTVKLISSENEGIYFEL-VGSDSPRLFLSMLGNHQIYNAAAAIAVAQY 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++   + +        R +  +C      F ++++SY +NP S+++ +  +     
Sbjct: 301 FNITLEKIQEGMLKIEATGMRNELIKC----NGFDILNDSYKSNPISLRSVLDTMYSFKK 356

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
           + +  +I VLGDM   GE   + HID+ E +    I +V+  G                 
Sbjct: 357 YKQ--KIVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVFTIGELGKYFAQGAKTRFPDE 414

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V        L   ++  +    +V++K S      ++++ L 
Sbjct: 415 RVFSFMDKSSLTTKLKEMIKKDAIVLIKGSRILELEKVVDELK 457


>gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 456

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 217/467 (46%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELVIHLDARLVGG--DCSFHGVSTDSRGIAPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V       +   S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AGKGAVGALV----EHEVEGASLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  + D  + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHDAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G + I  AK EI EGL+ TGT  LN DD  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDRIVEAKGEILEGLDATGTAVLNLDDKAFPIWQLRA 234

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + + +F   +  AD      ++ +       +     +  V  + +G H   N L
Sbjct: 235 ---GERKVMTFALNNPAADLHATDLRRDARGCPAFMLNSPLGAAPVQLNLLGTHNVANAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++     L+   P +G   R    +      +ID++YNANPAS+ AA+
Sbjct: 292 AAAAAACALGVSLEGIAAGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPASINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  S    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A
Sbjct: 349 DILTGFS----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H H+  + + L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAHHFASQEELIAALGAEQNPDTTLLIKGSRSAAMENVVAAL 448


>gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
 gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
          Length = 471

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 207/466 (44%), Gaps = 11/466 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T     Q I G  +       +  +  D+R++A  + F A+KG  +D ++F+  A  +
Sbjct: 2   MFTLAQAQQWIPGARLVGDGATAIARVHTDTRTLAEGDLFVALKGERFDANEFLADAKAR 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + +      + +  +    V D L AL  L    R +    +IA+TGS GKTT  
Sbjct: 62  GAVAAIAH----GGLEAAGLAGLEVPDSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVT 117

Query: 124 EMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +M+   L +    +  A  G++NN IGVPLTL R+       + ELGM+H GEI  L  +
Sbjct: 118 QMIAAVLVAFRGDRALATAGNFNNEIGVPLTLLRLRAKHQHAVVELGMNHPGEIARLAAI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A++      HL   + +E +A     +F  + + GT    + D F  L    +H 
Sbjct: 178 ARPTVALVNNAQREHLEFMATVEAVALENGAVFSFVPEDGTAVFPHGDEFAPLWNDMAHD 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +   +FG+ ++AD  L   +       + ++      +   H  G H   N L    
Sbjct: 238 GATRRCMTFGEHEDADISLVAAEWQQGAWQVRIRTPLGDFDAQLHIAGRHNVVNALAATA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVL 360
                    +T  + LS F P +GR K     L  G   TL+D+SYNANP S++AAI VL
Sbjct: 298 CALATGIPPETIARGLSAFEPVKGRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVL 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R+ VLGDM E+G  +  FH ++ +      I  V+  G        A   
Sbjct: 358 AALP----GPRLLVLGDMGEVGNRAPEFHAEVGDWARQRGIEAVYALGAETAHSIAAFDG 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  +   ++ L   + + L     V+VK S      R++  + +
Sbjct: 414 GDNGRHFADIEALGAAVLARLPQVGSVLVKGSRFMKMERVVQAIEQ 459


>gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
 gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
          Length = 471

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 201/472 (42%), Gaps = 29/472 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAAVVGGQTHDIPDPSVQVTGPVVRDSREAVPGSLFVAFVGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V +   + +P   V+DV  AL  LA     R  AT++A+TGS G
Sbjct: 60  -------AVVAAGAVAVLASRPVGVPAIVVEDVQAALGALARHVVNRLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L +   T    GS NN IG+PLT      D  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLTALSATEDTRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
           T L  P + V+  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 173 TELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAEDGGAAILNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG+S  AD +    +          +     + +V     G H   
Sbjct: 233 ASRTKA----KVILFGESDEADVRAENVRLTDSGQPSFRLHTPSGASDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L         ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGMSATEIATALSEAGSLSRW--RMEVTERPDGVTVVNDAYNANPESMR 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
           AA+  L  +      R  AVLG M E+G+ + + H  +  +    N+S +   G      
Sbjct: 347 AALRALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREASW 404

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             + A  +       VH S+        ++S L  GDVV+VK+S S G   +
Sbjct: 405 LQLGAYNEGSWGEESVHVSD-AQAAIDLLRSELRPGDVVLVKASRSVGLEGV 455


>gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     I    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLILAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halorhodospira halophila SL1]
 gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Halorhodospira halophila SL1]
          Length = 450

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 198/464 (42%), Gaps = 26/464 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+PL +   +        IG    G V G+++DSR       F A+ G   DGHDF   A
Sbjct: 1   MDPL-SLEQIAALTGAELIGNGG-GAVTGVALDSRRATSGSLFVALPGARCDGHDFADDA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  V+            ++P   V+D   AL  L    R RS   ++A+TGS GKT
Sbjct: 59  AARGAVAVLGTR------PVGALPTLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   L+    T A  G+ NN +GVP  L R+     F + E+G +  GEI  LT 
Sbjct: 113 TVKELLAAMLAESGPTLATEGNRNNLLGVPEMLCRLGAGHRFAVIEMGANAPGEIAQLTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P + V+T   PAHL  F  ++ +A AK E+F+GL + G   LN DD F  L +  + 
Sbjct: 173 WAQPDVGVVTNAGPAHLEGFGSLDGVARAKGELFQGLPRQGVAVLNADDDFCGLWREMA- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G +   +FG          +++     S +E+ L G  M      +G H AQN+    
Sbjct: 232 --GARRCLTFGADAG------QFRHRGHGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAA 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L     T +  +S      G   R           L+D++YNANPAS++AAI  +
Sbjct: 284 ACAAALEVPARTILDRISSAAAVPG---RLELRRGDHGGWLVDDTYNANPASLQAAIDTV 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +            +LG M E+G  +  +H           +  +W  G       +A   
Sbjct: 341 TGFQAAP----WLLLGAMGELGAETAEWHSRAGRRARAAGVERLWTLGEAAAPAAEAFGE 396

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +    L    ++ L    VV++K S S    R+   L
Sbjct: 397 GGRC--FDNASALIEACRAELPADAVVLIKGSRSAAMERVAAGL 438


>gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 456

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 210/472 (44%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +  + IG   Q  V  I+ D+R       FFA+KG H+D H ++  A
Sbjct: 1   MIKLTT-QQLAQILNANLIG-DGQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +VV      +  ++S P   V D   AL +LA   R +    I+A+TGS GKT
Sbjct: 59  VEQGATALVVQK----ANTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H GEI 
Sbjct: 115 TVKEMTASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEID 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + THL +P  A++  +A AHL  F  IE +A AK EI+ GL   G   +N + ++ EL +
Sbjct: 175 YTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTPNGMAIINSEHNYIELWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +   +G   I  F      D++    +     S   +     S+E+    +G H  +N 
Sbjct: 235 KE---IGSHAIQYF---NGGDYKAENVEHSPNGSTFMLVSPKGSIEINLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S++AA
Sbjct: 289 LAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNEN---LLLLDDTYNANVDSLQAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI ++GDM E+GE S   H  + E      +  V   G     + +
Sbjct: 346 IDVLKGYDAF----RILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVLSYGTESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
           A+        +E        I+  L +    VV+ K S S      I  L +
Sbjct: 402 AVLGKHFTDKAELTAYALDIIKQKLQENQKVVVLAKGSRSMKMEETIYSLKD 453


>gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
 gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
          Length = 463

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 171/467 (36%), Positives = 234/467 (50%), Gaps = 17/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  ++ +A  G +        V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MSDLWTSAEIAEATGGAASAPF---AVSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+  +         P   V D   AL  L +A+R R    +I +TGSVGKT
Sbjct: 58  FAQGAAGAIVSDAVDH-------PHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKT 110

Query: 121 TTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L +AL  ++  + +  + SYNNH+GVPL+LARMP D  +GIFE+GM+H GE+  L
Sbjct: 111 GTKEALYLALDRAAPGQAHRSVKSYNNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           TH VRPH A++T IAPAH+  F    +IA AKAEIFEGLE      + YD      L  K
Sbjct: 171 THQVRPHAAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAAAIIPYDSPHVATLYNK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + I +FG S  AD    +        + +  +L    +       G H   N L
Sbjct: 231 AERHAAR-ILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V  +  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM A  
Sbjct: 290 AVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAA-- 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L Q+      RRIAVLG M E+G  S   H  LA+ L+   I    L G  +  L DA
Sbjct: 348 -TLKQLGREHADRRIAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAEMAPLADA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L  ++   +          I+  +  GD ++VK SN  G  RL+  L
Sbjct: 407 LEGTMAYAHVPDAASAIPLIKKEMRAGDAILVKGSNGIGLSRLVAAL 453


>gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1]
          Length = 456

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 205/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSEHPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++       E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKNSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPLG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDQKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1005

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 214/471 (45%), Gaps = 23/471 (4%)

Query: 9   DLLQAIQGH----SIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++++A +GH         PQ  V+ +  IDSR +   E F A+KG + DGH FI    +K
Sbjct: 537 EVVEAGRGHGDSLPPSQPPQEMVSPVVVIDSREVRGGELFIALKGENADGHCFIGTVFEK 596

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA   +V+       GS+  P        DD +  L +LA   R +    ++AI GS GK
Sbjct: 597 GASWAMVSRQWYEEQGSVDPPPGKGFIVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGK 656

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   L +  + +   G+ NNH+GVPLTL ++  D D  + E+G++H GE+  L 
Sbjct: 657 TTTKEMVASVLGTGFRVHMSEGNRNNHLGVPLTLLQLRGDTDIAVVEMGINHPGEMVLLA 716

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAK 238
            +  P  A++T I   HL     ++ + +A+  +F+ L +  G  F+N DD         
Sbjct: 717 AIGSPTHALLTNIGHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDPRIS----- 771

Query: 239 SHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQN 295
           + A G+     +G +  ++     R     S  +    +     S  V  +  G H   N
Sbjct: 772 AAASGMAGSVPYGMATRSEHSCWARDISVNSAGALSFLLCSIAGSEPVTLNFTGKHNVMN 831

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    +       +    + L    P  G  +            +++++YNAN  SM+ 
Sbjct: 832 AIAAATVGHYFGLSLCQIREGLERLTPAPGWKRLEVLDAC--GVRILNDTYNANSDSMRK 889

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI  L  +     G+R+AVLGDM E+G   +  H  +   L   ++  ++  G       
Sbjct: 890 AIDALCDLPGA--GKRVAVLGDMLELGLAGEVEHQAIGNYLQQSSVDLLFTFGESARLFG 947

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A+P     H+ E+ + L   +++ L +GD+V+ K S      ++++ L+ 
Sbjct: 948 RAVPERYRGHF-ESREALLEALRTVLQEGDIVLFKGSRGMKLEQVVDALIN 997



 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 110/484 (22%), Positives = 180/484 (37%), Gaps = 55/484 (11%)

Query: 7   FHDLLQAIQG-HSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +LL+ I     +G     G ++ ++ DSR + P   F AIKG   DG  FI  AV++G
Sbjct: 15  LEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIRSAVERG 74

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  V+       S  +L      V D   AL + A     +   +  II +TG+ GKTTT
Sbjct: 75  AAAVICEE--FPSDPALPCLYIKVADARKALAEAARIFYGKASDQLLIIGVTGTNGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
            +++T  L++   +   IG+    IG                       +       + E
Sbjct: 133 AKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQMLEAGCKAAVME 192

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +R H A+ T +   HL     + + A AK ++F+ L   G   LN
Sbjct: 193 VSSHALVLQR--VYGIRFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQLSPDGFAVLN 250

Query: 227 YDDSFFELLKAK---------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            DD + E + A+         +   G++   S  +   AD      +     S + +   
Sbjct: 251 IDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADL----LQGTLASSTIVLHFP 306

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +S+E+     G     N+L    I + +         ALS     EGR +R      QG
Sbjct: 307 DESVEMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERV-GESRQG 365

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           +   +D  Y   P ++  A+  L  +      R I V G     G   +    ++  + S
Sbjct: 366 WMAFVD--YAHTPDALFKALDALHGLK-EDASRLIVVFGC---GGNRDKEKRSEMGRIAS 419

Query: 398 LYNISHVWLS-----GFHVLALKDALPRSI-HVHY--SETMDGLFLFIQSSLVDGDVVVV 449
                 V ++           + DA+ R I  VHY                L  GD+++V
Sbjct: 420 EI-ADEVIITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLV 478

Query: 450 --KS 451
             K 
Sbjct: 479 AGKG 482


>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
          Length = 473

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 203/465 (43%), Gaps = 24/465 (5%)

Query: 15  QGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            G +    P+  V G +  DSR + P   F AI+G   DGH F   AV  GA  V+ +  
Sbjct: 15  GGLADVPDPERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAVLADHP 74

Query: 74  MVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                  + +P   VDD +  L +L      L     +I ITGS GKT+TK++    L+ 
Sbjct: 75  -------VGVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDLGAQVLAR 127

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T A  GS N  +G+PLT+ R   D  F + E     +G I +L  +  P I V+  +
Sbjct: 128 LGPTVAPTGSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAYLCRIAPPRIGVVLNV 187

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             AHL  F   E IA AK E+ E L   GT  LN DD     ++ ++ A     + +FG 
Sbjct: 188 GSAHLGEFGSREAIAQAKGELVEALPADGTAVLNADDPLVLGMRHRTRA----RVVTFGT 243

Query: 253 SKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           S +AD +  +      +  S+      G  + V     G H   N L    +  +L    
Sbjct: 244 SADADVRATEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHVSNALAVATVAWVLGLGA 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +    AL    P      R          T+I+++YNANP SM AA+   + ++     R
Sbjct: 304 EEIAAALREARPLSRW--RMEVTTRDDGVTVINDAYNANPESMTAAL---TALAAATAAR 358

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHY 426
           RIAVLG M E+G  + + H ++ E  +   +  + + G     + D   R       V  
Sbjct: 359 RIAVLGPMAELGPAAPAAHAEVGETAARVGVDWLIVVGADATPIADGARRGGLAAEAVTV 418

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                     +  +L  GDVVV+K+S S G  ++   LL + PA+
Sbjct: 419 VPDAAAATALLTPALRAGDVVVIKASRSYGLEQVAAALLAQTPAV 463


>gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 456

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 213/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELASEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F      AD         +       +       +V  + +G H   N L
Sbjct: 235 ---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLGAHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+
Sbjct: 292 AAAAAACALGVTLEGIVAGLNNVQPVKG---RAVVQIASNGTRVIDDTYNANPASINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
 gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
          Length = 452

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 207/470 (44%), Gaps = 27/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +WT    +    G   G       + +  DSR+    + F A++G  +DGH+++  A   
Sbjct: 1   MWTLAQAIARAGGVLHG--SDVAFSSVGTDSRADCTGQLFVALRGERFDGHEYVAAA--- 55

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     MV     L +P + VDD    L +LA A R R    +IAITGS GKTT K
Sbjct: 56  --QAAGAVAAMVDQPLPLDLPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   LS   +  A  G+ NN IG+PLTL     D DF + E+G +H GEI ++T + R
Sbjct: 114 EMVAAILSQAGRVRATRGNLNNDIGMPLTLLSA-RDEDFLVLEMGANHHGEIGYMTEIAR 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT    AHL  F  +E +A AK EI  GL + G   ++ D  +  L +  +    
Sbjct: 173 PEVALITNAGRAHLEGFGSVEGVARAKGEIARGLPEDGVFVVSGDSPYLGLWRELAEG-- 230

Query: 244 IKTIYSFGKSKNADFQL------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + + +F     AD          +W     ++    ++  ++  +     G H  +N L
Sbjct: 231 -RRMLTFALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L  D       L    P +GR     C        +ID+SYNANP S+ AAI
Sbjct: 290 AASAGALALGLDRAAIAAGLESLTPVKGRLYPRLCREIG----VIDDSYNANPDSIAAAI 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +VL+ ++    GRR  VLGD+ E+G  +   H ++ E      +  ++  G        A
Sbjct: 346 AVLAGLT----GRRTLVLGDLGELGADAARLHAEIGEQAHAAGLDRLFTVGTLSAEASRA 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +    D L   +++ L  GD V+VK S      R++  L  E
Sbjct: 402 FGAG--AEHFADQDALLNRLKADLKPGDRVLVKGSRLARMERIVEALCAE 449


>gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
          Length = 448

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 215/472 (45%), Gaps = 30/472 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L     L+Q I G      +     V G SIDSR++   E F AI+G ++DG ++I 
Sbjct: 1   MIALK-VSKLIQVIDGKIKQKQLEEDEEVFGFSIDSRTLRKNEIFIAIQGENFDGSNYID 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++KG+  ++ ++    S          V +    L K+A          IIAITGS G
Sbjct: 60  VAIKKGSSWIITSSKNHKSNRC-----IYVKNTKETLCKIASYLVGEVSPKIIAITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTTTKEM+   L             G+ NN IG+PLTL  +  +    + E+GM+H  EI
Sbjct: 115 KTTTKEMVANILYQHYPKNEILVTKGNLNNDIGLPLTLFNLKKNHTIVVLEMGMNHQDEI 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +  P IAVIT I  AHL NFS    IA AK EI  G +K G   L  DD +F  L
Sbjct: 175 TKLCKIAPPDIAVITNIGEAHLENFSSKNGIAKAKKEILLGAKKNGIAILPRDDVYFNYL 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           K+    L      SFG +KN++ +L       + S   + +  + + +    +G     N
Sbjct: 235 KSDCLYL---RCISFGINKNSNIRL-------DLSSKVLTVDEEKINIESSLLGKENLMN 284

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           M   + + + L    +T IK +      EG   R    +      +ID++YN+NP+SM  
Sbjct: 285 MAAAVSVANALELPTETIIKGMKTIDSIEG---RLEVKITASNIKIIDDTYNSNPSSMMM 341

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL Q       ++I ++GDM E+G LS+ +H D+   +   NI  V   G     L 
Sbjct: 342 AIDVLDQFKQ----KKILIVGDMAELGPLSKKYHTDIGHYILEKNIDLVMGIGNMTKYLI 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           D L       +  + + L       L    VV+VK S       +++ + E+
Sbjct: 398 DVL--GTKGLWYPSKEDLLNETNKILKKDTVVLVKGSRFMRMEEIVDGINEQ 447


>gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 477

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 251/475 (52%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +      G +          G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDEAAATTGGRATRAFAA---TGVSIDTRSLGPGDLFVALTDQR-DGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSRRPEGLPED--APLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLSAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+  + +FG++ +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
          Length = 453

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 205/470 (43%), Gaps = 30/470 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+     + I     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVVTLTEKEVANH------PYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D      L A       
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEAYLPA------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +          + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLIERKDSLTFNANFLEQDLD--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            HV Y       +  + L   ++ SL   D +++K SNS    +L+  L+
Sbjct: 404 GHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLM 453


>gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
 gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
          Length = 474

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 206/482 (42%), Gaps = 32/482 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T  ++     G     +P   V     + IDSR + P   F A +G H DGHD+ 
Sbjct: 1   MIAL-TLAEIADITGGRP-HDIPDPSVRTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYA 58

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
                     V      V +   + +P   V DV  AL  LA     R    ++A+TGS 
Sbjct: 59  G-------RAVAAGAVAVLAARPVGVPAIVVPDVEKALGALARTVVERLGTDVVALTGSA 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++   L     T    GS NN IG+PLT  +   +    + E+G   +G I +
Sbjct: 112 GKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGLPLTALKATAETRHLVLEMGARGIGHIAY 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFEL 234
           LT L  P I ++  +  AH+  F G E IA AK E+ E L    + G   LN DD     
Sbjct: 172 LTGLTPPRIGLVLNVGTAHIGEFGGREAIAQAKGELVEALPSEAEGGVAVLNADDLLVRA 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMA 293
           + A++ A        FG++++AD +  + +          +       +V     G H  
Sbjct: 232 MSARTKA----RTVLFGEAEDADVRATEVRMTPAGQPSFTLHTPTGCSDVTLRLYGEHHV 287

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +  +L    +    ALS          R      +   T+++++YNANP SM
Sbjct: 288 SNALAAAAVAHVLGMPAEEIATALSGAGTLSRW--RMEVTEREDGVTIVNDAYNANPESM 345

Query: 354 KAAISVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           +AA+  L  +   G+   GR  AVLG M E+G+ S + H  +  +    N+S +   G  
Sbjct: 346 RAALRALVAMGEAGKADGGRTWAVLGPMAELGDDSLAEHDAVGRLAVRLNVSRLVAVGGR 405

Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 + A  +       V  S+        ++S L  GDVV+VK+S S G  R+   L
Sbjct: 406 EASWLQLGAYNEGSWGEESVLVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLERVALAL 464

Query: 465 LE 466
           L+
Sbjct: 465 LD 466


>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 470

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 213/465 (45%), Gaps = 17/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++        I   P   V  ++ D+R +A  E F A++G  +DGHDF   AV +GA
Sbjct: 5   TIAEIRAVTGAEIIQGEPSARVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+ ++    G   + V  V D L AL  LA+  R R    +IA+TGS GKTTTK++
Sbjct: 65  CGLLVSREVSVPSG---VAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDL 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT  L++  +  A   + NN IG+PLTL  +    +  + ELGM   GEI  L  +  P 
Sbjct: 122 LTAVLAARFRVLATRENLNNEIGLPLTLLDVDPVHEVAVVELGMRAPGEIDLLARICEPT 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             VIT I   HL     +  IA AK E+ + +  +G   L+ +    +    +       
Sbjct: 182 GGVITNIGETHLELLGSVANIARAKGELLDHIPPSGFAVLHAESPGMDEQARRCRG---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG+S++ADF+L  ++   + S   V+  G   E      G H A N L  + +   
Sbjct: 238 RVVRFGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVGLE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   V      L        R    +  +  G  T+I+++YNA+PAS+KAA+ VL++I+ 
Sbjct: 298 LGLAVSEIRAGLEQARASSLR----QAIVKAGGLTIINDTYNASPASVKAALEVLAEIAA 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
                 +A+LG M E+G  S   H ++    +   +  +   G   + + D    +    
Sbjct: 354 --GRSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTMGELAVGIADGAREAGLPA 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +    T++      +    +  V++VK S +    R++  L E
Sbjct: 412 SRIWACHTLEETVDTARRLAGENVVILVKGSRAFQMERIVKGLAE 456


>gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     + +  D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLVPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
 gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
          Length = 462

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 222/473 (46%), Gaps = 30/473 (6%)

Query: 1   MNPL---WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+   W  + L    QG          V  I+ D+R++   E F A+KGP++DGH FI
Sbjct: 1   MIPMDFDWLANVLATDYQG------DNRKVININTDTRTLCDGEVFLALKGPNFDGHKFI 54

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A QKGA  V+V+  +        I  F V D   AL  +  A   +     IAITGSV
Sbjct: 55  EQAKQKGAIGVIVDHAV-----DTDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSV 109

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT KEM    LSS     A  G++NN IGVPLTL R+     F + ELG +H+GEI +
Sbjct: 110 GKTTVKEMCAAILSSKGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHIGEIAY 169

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T + +P +AV+  +A AHL  F  ++ +A AK EI++GL++ G   +N D  F +    
Sbjct: 170 TTAMTKPDVAVVCNVAAAHLEGFGSLQGVAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLD 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K   L  + I  F  S+  D         ++ ++   +  +  S+ V     G H   N 
Sbjct: 230 K---LATRNIKCFSSSEKLDIWAEDISLDAQARASFTLCTKQHSVPVKLALPGKHNISNA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+   + S     ++    AL+     +G   R          T+ID++YNAN  S+KAA
Sbjct: 287 LIAAALTSEFDVSLEDIASALATMGEVKG---RVNLIEASDSLTIIDDTYNANVKSVKAA 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS I     G RI  LGDM E+GE ++ +H ++ E      I  ++  G       D
Sbjct: 344 IDLLSDIQ----GHRILALGDMGELGEDARKYHQEVGEYALAQGIDELFTLGVLSKCASD 399

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466
                +   +    + +   IQ+S+   D    +VVK S S     L+  L+ 
Sbjct: 400 VF--GLPNRHFSNREQMLQQIQNSISKVDKKITLVVKGSRSSRMELLVTDLVN 450


>gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae
           TIGR4]
 gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 457

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
           ATCC 367]
 gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis ATCC 367]
          Length = 461

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 213/468 (45%), Gaps = 19/468 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++  A+   +         V  ++ DSR + P   F  + G H DGH FI  A+  
Sbjct: 3   MQLAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGGLFIPLTGEH-DGHQFIQSAIDH 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D+ ++      PV  VDD L AL  LA     +    ++A+TGS GKTTTK
Sbjct: 62  GAVATLWARDLASAPADF--PVIQVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIAAVLSTQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLSQLVS 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  AH+  F   ++IA AK EI  GL   G    N D+    LL+ ++  L 
Sbjct: 180 PDLALITMIGEAHIEFFGTRDKIADAKMEITHGLSDDGVFVFNGDEP---LLRERATELT 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG+    D            +      Q   +      IG +   N L  L + 
Sbjct: 237 QRQV-TFGQQGTDDLFATDVTGTPTTTSFTTN-QWPEVTFTIPMIGTYNVNNALAALSVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     ++A +AL+     E R +    A       ++ + YN+NP + K  ++  SQ 
Sbjct: 295 MLYRIRPESAKQALATVSLTENRAEWVTSAS---GAAILSDVYNSNPTAAKEVLTAFSQT 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPR 420
                G+R  VLGDM E+G+ + + H  LA  +    I HV+L G H+    A       
Sbjct: 352 P--VTGQRYVVLGDMLELGDQADAMHASLASAIDATKIDHVYLVGPHMLALQAALAQQQP 409

Query: 421 SIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + V + ET D   L + +Q+ L   D +++K S+     +++  L +
Sbjct: 410 QLAVSHYETTDLATLTVDLQNQLTADDQILLKGSHGIHLEQVLASLQD 457


>gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 210/467 (44%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF++L QA+    +        +G+SIDSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLKAMTFNELAQALSARVLS--SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +   ++P   V D   AL +L    R      + AITGS GKT
Sbjct: 59  AAKGAVGALVQRE----VADSALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   L +     A  G+ NN  G PLTL  +  +    + ELG S +GEI +   
Sbjct: 115 TVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRIGEIAYTVA 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+A+I     AH+  F G E+I  AK EI EGL+ +GT  LN DD  FE  + ++ 
Sbjct: 175 LTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRVRAA 234

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               + + +F   +  ADF        +       +     S  V  + +G H   N L 
Sbjct: 235 G---RKVLTFAVLNAAADFHASNITVDARGCPSFTLHSPQGSEHVQLNLLGNHNVANALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +      L    P +G   R    L      +ID++YNAN +S+ AAI 
Sbjct: 292 AAAAAYALGVSLFGIATGLGAVQPVKG---RTVAQLATNGMRVIDDTYNANQSSVCAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L         R++ VLGD+ E+G+ ++  H ++    S   +  ++  G ++    +A 
Sbjct: 349 LLKGFDT----RKVLVLGDIAELGDWAEQSHREVGAYASG-KVDALYAVGPNMAHAVNAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464
                  +  T   L   + ++  D    +++K S S     ++  L
Sbjct: 404 GPGAR--HFATQAELIQALTAAEHDTHTTILIKGSRSAVMENVVAAL 448


>gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
 gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
          Length = 456

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 124/473 (26%), Positives = 206/473 (43%), Gaps = 30/473 (6%)

Query: 4   LWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   +++ + +     +       +     DSR I   + F  +KG   DGH+FI  A  
Sbjct: 2   ILDLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIGSGDLFVPLKGAR-DGHNFIPTAFA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +    +             VDDVL A  +LA     + +  ++A+TGS GKTTT
Sbjct: 61  QGAAATLSERPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTT 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   L++  KTY   G+YNN IG+P T+  MP + +  + E+G  HLG+I  L+ L 
Sbjct: 115 KDMLAQLLATSYKTYKTQGNYNNEIGLPYTILHMPENTEKLVLEMGQDHLGDIHLLSELA 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P   ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A     
Sbjct: 175 KPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK-- 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               +  FG   ++D  L + ++  +    E     + ++      G + A N ++    
Sbjct: 233 ----LVRFG--PDSDIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYA 284

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                       +A S          R           ++ + YNANP +M+  +   S 
Sbjct: 285 ALQEGVSEAAIAQAFSELELTR---NRTEWKKASNGADILSDVYNANPTAMRLILETFST 341

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           I  +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D      
Sbjct: 342 IPTNPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIY 401

Query: 421 -SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               V Y       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 402 PPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 487

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 123/484 (25%), Positives = 196/484 (40%), Gaps = 31/484 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+ +A+ G          V+  +  DSR +AP   F A+ G   DGHDF   AV  G
Sbjct: 5   SLADIAEAVGGRLHRADGSEIVSASVEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV-LGALN----------------KLAVAARLRSK 107
           A  V+   ++     ++ +P    +   L AL                           +
Sbjct: 65  AAGVLAAREV--DAPAVIVPPVPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLPR 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++ +TGS GKT+TK+++   L  +  T A  GS+NN +G P T  R   D    + EL
Sbjct: 123 LTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLEL 182

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +G I  L  +  P I  +  +  AHL  F   E +A AK E+ E L   G   LN 
Sbjct: 183 SARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNA 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286
           DD     + +++ A     +   G+S  A  +        + +    +     S +V   
Sbjct: 243 DDPLVAAMASRTRA----RVVLVGESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLP 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    I   L A ++     LS         +R   A      T+++++Y
Sbjct: 299 LHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRVSA--RRMEVAETADGVTVVNDAY 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP SM+AA+  L+ ++    GR  AVLG M E+GE     H ++  +    NI  + +
Sbjct: 357 NANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVV 416

Query: 407 SGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            G     +                   +D     +++ L  GDVV+ K+S     +R+  
Sbjct: 417 VGDQAAGMHHGASLEGSWGEESVLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAE 476

Query: 463 LLLE 466
            L+E
Sbjct: 477 ALIE 480


>gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
 gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
          Length = 457

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+  +    +  +    +V    ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELGITDLVERKDSLTFKVNFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 470

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 130/468 (27%), Positives = 205/468 (43%), Gaps = 14/468 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ + T    L+ I G ++       ++ +  D+R+I P + F A++G  +D +D +  A
Sbjct: 1   MSAMMTLSHALKLIPGATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+ +  + AS     +P   V++   AL  LA   R +    +IA+TGS GKT
Sbjct: 61  FAKGAAAVLCHAGLTASAYPAGLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKT 120

Query: 121 TTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T  +M+   L   +      A +G++NN IGVPLTL RM       + ELGM+H GEI  
Sbjct: 121 TVTQMIASILHAHAPDGAALATVGNFNNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAV 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      HL     IE +A     +   L +TGT     DD +  L + 
Sbjct: 181 LAAMAQPTVALVNNAQREHLEFMHTIEAVARENGSVLSSLPETGTAVFPADDDYAPLWRE 240

Query: 238 KSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            S     + + +F +    ADF +R          +        +       G H  +N 
Sbjct: 241 LSAG---RVVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNS 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L              T  + L  F P +GR +  +       FTL+D++YNANP SM+AA
Sbjct: 298 LAAAACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSMRAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+ +     G R+ V+GDM E+GE   +FH +         I HV   G        
Sbjct: 358 IDVLADLP----GPRLLVMGDMGEVGEQGPAFHAEAGRYARDAGIEHVLALGDSSAHAVQ 413

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +P +    + + +  L     +       V+VK S      R++  L
Sbjct: 414 EMPGA---RHFKDVADLNAAALALAPAVASVLVKGSRFMRMERVVEAL 458


>gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
 gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
          Length = 460

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 209/475 (44%), Gaps = 35/475 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      +  +S D+R+I  +  F A+KG  +D HDF   A   GA 
Sbjct: 6   LSQLASVLNAELIGA--DISIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122
            ++V+  +        +P   V D   AL  +    +     +     +A+TGS GKTT 
Sbjct: 64  ALLVSKPLPVE-----LPQLVVSDTRIALGMMGAWLKAQMTEKYGLKTLALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    L++  +  A  G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV
Sbjct: 119 KEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEIFYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A+I  IA AHL  F  ++ +A AK EIFEGL + GT  +N++ +   L +     L
Sbjct: 179 KPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQ---PLL 235

Query: 243 GIKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + +F    + AD+   K K  ++  +   +      +++     G H   N L   
Sbjct: 236 AEHQVLTFSTDSHQADYFAEKIKITTQGLACFTMCTPIGKIDINLALAGMHNVSNALAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A +      L      +G   R           LID++YNA+ A++KAAI VL
Sbjct: 296 ALTVSLGATLADVKAGLETMANVKG---RLDITEPYARLRLIDDTYNASVAAVKAAIDVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      EG+R  + GDM E+GE S + H ++ E      +  V   G     + +    
Sbjct: 353 ASF----EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMTFGHSSAVVSEL--- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--------VVVVKSSNSCGFYRLINLLLEE 467
                +      L + ++  L             V+VK + S     +I  L E+
Sbjct: 406 -NQGQHFSDKGALIMSLKQQLQQYSRQPDAETVTVLVKGARSSKMEDVIAALQED 459


>gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
 gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
          Length = 478

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 204/469 (43%), Gaps = 21/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D  +A+  H          + +  DSR I P + F A++G  +DGH+F+  A++ 
Sbjct: 9   MMSLLDASRALSAHHAVAQGAVRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+       G  S+P+  VDD   AL  LA   R R    +I +TGS GKTT K
Sbjct: 69  GAAAAMVDARGFTEFGDASLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVK 128

Query: 124 EMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           EM    L +  +          A  G+ NN IG+PLTL  +       + E+GM+H GEI
Sbjct: 129 EMCAEILRAQARRDGAGDEAVLATRGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPGEI 188

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT L RP +A++     AHL     + E+A  K  I++GL   G   +N DD      
Sbjct: 189 AYLTGLARPTVAIVNNAQRAHLQGLGTLGEVAQEKGAIYQGLGAAGVAVVNADDPHAGYW 248

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +     + I SFG  + AD    +       S + +       EV     G H A N
Sbjct: 249 RDLNAG---RPIVSFGIDQPADV-AGECTLHGLGSQLHIAAPQGRGEVELQVPGLHNASN 304

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L             + A++ L+++    GR +R           ++D+SYNANP S++A
Sbjct: 305 ALGAAAACLAAGVVFEAALEGLALYEGTRGRLQRR---SGPQGAVILDDSYNANPDSVRA 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I VL+       G    VLGDM E+G+ S   H ++        I  ++  G       
Sbjct: 362 GIDVLASTP----GHTFLVLGDMGEVGQTSAQVHDEIGGYAKSKGIDGLYALGEASAIAV 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    H+ ++++ L   +   L    VV+VK S      R+ + L
Sbjct: 418 RNFGEG--AHHFDSVEALVAALAPRLDADAVVLVKGSRFMKMERVADAL 464


>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
 gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
          Length = 457

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 216/465 (46%), Gaps = 27/465 (5%)

Query: 10  LLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L+  +   ++GI  +       GI+ D+R++ P + F A++G  +DGH++   AV+KGA 
Sbjct: 10  LVDILAAKTVGIPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGAL 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+      + +    +P+  V++ L A  ++A   R + +  +IA+TGSVGKTTTKE++
Sbjct: 70  TVIAEATNASQLEG--LPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELI 127

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+         +YNN IGVP TL  +  D D+ + E+ M   G+I  LT +  P +
Sbjct: 128 AAVLSTKGTVLKTQANYNNEIGVPKTLLELTPDHDYAVIEMAMRGSGQIAELTEIANPTV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT +  AH+      E IA AK E+   +   G   LN+D+   + L   +  +    
Sbjct: 188 GVITNVGTAHIGLLGSTEAIAKAKCELLAHMSNNGVAVLNHDN---QRLIDTAAQVWQGQ 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             ++G  +  D Q +              L+ + ME      G H A N L  L I  +L
Sbjct: 245 TLTYGL-EGGDVQGQLIAPEI--------LKVEGMEFPIPLPGRHNALNYLAALAIGKLL 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D +T    L+V     GR +RY          ++DE+YNA   SM AA+ +L+Q    
Sbjct: 296 GVDWETLRNGLNV-ELPPGRSQRYELP---NDVVILDETYNAGVESMVAALEMLAQTP-- 349

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              R IAVLG M E+G  S   H  + + +   N+  + +         +A+   +    
Sbjct: 350 -GKRHIAVLGAMKELGTQSGELHQQVGQKVEQLNLDGLRILVDESDPEAEAIATGVTSVP 408

Query: 427 SETM---DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            E+    + L   +   +  GD ++ K+S+S G  +++      F
Sbjct: 409 VESFCDSNPLVEHLLEFVQPGDRLLFKASHSVGLDQVVKQFKAGF 453


>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
 gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
          Length = 452

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 213/473 (45%), Gaps = 27/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     + +A+    IG      +N +S D+R+I     F A+ G  +D H F   A
Sbjct: 1   MISLM-LSQIAEALDAELIGN--DRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V+  +     S  +P   V D   AL +L            +AITGS GKT
Sbjct: 58  VDSGAGALLVSKPV-----SGDVPQLVVKDTKLALGQLGALVHQTCLTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   +    +     G++NN IGVPLTL R   + D  + ELG +H+GEI + T 
Sbjct: 113 TVKEMIASIMEQKGQVLFTAGNFNNEIGVPLTLLRSTPEDDVAVIELGANHIGEIAYTTR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  +    
Sbjct: 173 LVQPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLKAGSVAIVNLDSNGGDYWQE--- 229

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  K + +F     +ADF           ++   ++     ++V    IG H   N L 
Sbjct: 230 VLADKLVKTFSLTDSSADFTASDISLNEIGEASFVLKTPQGEIKVTLGIIGQHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L A ++     L+  +  +G   R           LID+SYNA+  +MKAA  
Sbjct: 290 ATALALELGASLEMIQSGLASLNKVKG---RVELIELNQQIKLIDDSYNASVPAMKAAAD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+      +G R  +LG+M E+G+ S + H  + +  + +   +V   G    A+ +  
Sbjct: 347 LLAGF----KGVRWLILGNMAELGDESLALHRQVGQHAAPFKFEYVLTFGADAKAISE-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEEF 468
                  + E    +  FI+  +        ++VK +NS G  ++   + E +
Sbjct: 401 --ECGGRHFEDHQSMIDFIKQQIEQHLEPQTLLVKGANSAGMSKVAAAVKEMY 451


>gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
 gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
          Length = 459

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 173/467 (37%), Positives = 242/467 (51%), Gaps = 21/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  ++  A  G + G      V+G++ DSR + P + F A+ G   DGH F+  A  +
Sbjct: 3   LWTADEIATATGGQASGAF---AVSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQAFAQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ D          P   V D   AL  L  A+R R++ATII +TGSVGKT+ K
Sbjct: 60  GAAGALVSADTPH-------PHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKTSAK 112

Query: 124 EMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E L  AL      + +  + SYNNH GVPL+LARMP DV  G+FE+GM+H GE+  LT +
Sbjct: 113 EALYAALERGWHGRVHRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSALTAM 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPHIA++T IAPAH   F     IA AK EIF+GLE  GT  + YD    + L A +  
Sbjct: 173 VRPHIAIVTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGTAIIPYDSPHRDRLIAAAKP 232

Query: 242 LGIKTIYSFGKSKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + I +FG    AD       +  +  S++  +L  + +       G H   N L  L
Sbjct: 233 YAAR-IVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALAVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     D+  A  AL+      GRG R+R A       +IDESYNANPASM+A ++VL
Sbjct: 292 AAVDAAGGDLGLAGLALAELGGLAGRGARFRAA---NGALIIDESYNANPASMRATLAVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++      GR +AVLG+M E+G+ S  +H  LAE +   ++  V L G  +  L  AL  
Sbjct: 349 AE----EPGRHVAVLGEMRELGDDSADYHAGLAEPILAAHVEKVLLVGESMAPLAAALEG 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +          + S +   DVV++K SN  G  R++  L +E
Sbjct: 405 RVDFVHVTDAKAAQAALASIIAPNDVVLIKGSNGVGLARVVAGLGQE 451


>gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
 gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
          Length = 456

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 211/466 (45%), Gaps = 20/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L QA+    +        +G+SIDSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLKAMTFSELSQALSARVLS--SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V       +   ++P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVGALVQ----CEVPESTLPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   L +     A  G+ NN  G PLTL  +  +    + ELG S +GEI +   
Sbjct: 115 TVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVA 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+A+I     AH+  F G E+I  AK EI EGL+ +GT  LN DD  FE  +A++ 
Sbjct: 175 LTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRARAA 234

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               + + +F   +  ADF        +       +        V  + +G H   N L 
Sbjct: 235 G---RKVLTFAVLNAAADFHASDITVDARGCPSFTLHTPQGREPVQLNLLGNHNVANALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +      L    P +G   R    L      +ID++YNANP+S+ AA+ 
Sbjct: 292 AAAAAHALGVSLFGIATGLGAVQPVKG---RTVAQLATNGMRVIDDTYNANPSSINAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L       +GR++ VLGD+ E+GE ++  H ++    +   +  ++  G ++    +A 
Sbjct: 349 LLKGF----DGRKVLVLGDIGELGEWAEQGHREVGAYAAG-KVDALYAVGPNMAYAVNAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 H++  ++ +     +       +++K S S     ++  L
Sbjct: 404 GPGAQ-HFATQVELIQALTAAEHDKHTTILIKGSRSAVMENVVVAL 448


>gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 459

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 203/463 (43%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++ + + G        +  + GISIDSR+I     +  I G  +DG  FI      G
Sbjct: 5   NLEEIAKMLGGEISNPKYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +++ +      S+SIP   V D   AL  LA A R      IIAITGS GKTT+K 
Sbjct: 65  AVAFLIDENYKIP-KSISIPFVKVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKN 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K     G+ NN IGVPLTL         G+ E+G    GEI  LT++ +P
Sbjct: 124 LIHSVLSEKYKVEKTQGNLNNEIGVPLTLLDFSDKTQIGVVEMGTEDFGEISLLTNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  AHL      E IA AK EI EGL+  GT   N DD   + +   S+ +  
Sbjct: 184 DMAMITNIGDAHLLKLKSREGIAKAKLEILEGLKADGTFIYNGDDEILKKVLP-SYTIKQ 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KTI S+GK    +F++  + +    ++ +   + +  +     +G H   N  + + I  
Sbjct: 243 KTI-SYGKEDGVNFKV--YPKEFSSTYTKFSYENEDYK--VPLLGTHQVYNGALAVLIGK 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +     L+       R +       +  F ++D++Y +NP S+K  + +   + 
Sbjct: 298 LFNLSYEEIDNGLAKVSNNANRNELIE----RNGFDILDDAYKSNPQSLKQGLELAGFLD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +    +I VLGDM E+G+  ++ H      +    I++    G     +  A   +   
Sbjct: 354 GYLN--KIVVLGDMLELGDGEKNLHYKSGLDIKPKKINYCLFYGPLCKEMYKASLENFPE 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               Y E  + L   ++  +    +V VK S       +I  +
Sbjct: 412 NRSFYFENKNDLIDKLKFLITKSTLVFVKGSRGLHMEEVIEAI 454


>gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J1-208]
          Length = 418

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 119/428 (27%), Positives = 201/428 (46%), Gaps = 15/428 (3%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           + F    G   DGH+F+  A + GA       D+         PV  V+D L AL +LA 
Sbjct: 1   DLFVPFVGNVRDGHEFVNQAREMGAVATFWQKDVPNPPTDF--PVILVEDTLLALQELAA 58

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               + K  +IAITGS GKTTTK+++   + +  K +   G++NNHIG+P T+  MP D 
Sbjct: 59  KYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT 118

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEIA AK EI  GL  +
Sbjct: 119 EVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPS 178

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G +   ++++         +  G     +FGKS+ A+    + +  +E +      +   
Sbjct: 179 GILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTCFITNWE-PE 232

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+    IG H   N +  +     +  + +    AL      +    R      +    
Sbjct: 233 LEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKS---RLEWITTKSGAR 289

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +++++YN++P ++K  +     +   G+  +  VL DM E+G+LS   H + AEVL    
Sbjct: 290 ILNDAYNSSPTALKTVLKTFMHMDSSGKP-KYLVLADMLELGDLSTKLHQESAEVLESDT 348

Query: 401 ISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           I  V+L G  + A  +     I    VH+ +T + L   + S +   + ++VK S   G 
Sbjct: 349 IEKVFLYGDAMKAFGEVAEAKIGQGKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGL 408

Query: 458 YRLINLLL 465
             ++  L+
Sbjct: 409 KDVVENLI 416


>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 200/463 (43%), Gaps = 22/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T + L  AI   +         +G+S DSR +A    F A++G  +D H F+    ++  
Sbjct: 4   TLNLLQTAI--KNATATGDAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV           L++P   V D   AL ++A   R +    +I +TGS GKTT KEM
Sbjct: 62  AAVVAEKI----PAGLNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +   L +        A  G++NN IGVPLTL R+       + ELGM+H GEI  L+ + 
Sbjct: 118 IAAILDAAFGPDNYLATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + ++      H      +E +A     +   L   G      DD+F  L ++ +   
Sbjct: 178 QPTVGLVNNAQREHQEFMESVEAVAQENGAVLASLPADGVAVFPADDAFTPLWRSYAAQ- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG S +AD +   +      + M V    +   +     G H  +N L  +  
Sbjct: 237 --RKTLTFGFSADADVRCT-YAANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIAC 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +    +  ++ L  F P  GR +R    L      +ID++YNANP S++AAI VL+Q
Sbjct: 294 TLAIGIAPEAIVRGLQAFAPVSGRLQR---KLAASGALVIDDTYNANPDSVRAAIDVLAQ 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++      RI VLGDM E+G   + +H ++        I HV   G        A     
Sbjct: 351 MASP----RILVLGDMGEVGNDGRQYHEEIGAYARANGIEHVLALGELARHTVSAFGAG- 405

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + ++++ L   + +       V+VK S      R++  LL
Sbjct: 406 -AQHYDSVEALNDALAAIFAADATVLVKGSRFMKMERVVQHLL 447


>gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 471

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 212/474 (44%), Gaps = 17/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + +  D  + I        P   +    + IDSR +   E F A+KG   DGH ++ 
Sbjct: 1   MKGVLSVEDF-RGIGDVVTHGSPLLTITAPVVVIDSREVKGGELFVALKGERTDGHCYVS 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +  Q+GA  V+V+ +     GS   P        DD +  L +LA   R      ++AI 
Sbjct: 60  NVFQQGASWVMVSREWYEKEGSPQPPEGKGFIVTDDPVSGLQQLASCYRKTFSIPVVAIG 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEM+   L++        G+ NNH+GVPLTL ++  D    + E+G++H GE
Sbjct: 120 GSNGKTTTKEMVASVLATGFTVQMSQGNRNNHLGVPLTLLQLRPDTGIAVVEVGINHPGE 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFE 233
           +  LT + RP   ++T I   HL     ++ +A+A+ ++F  L++  GT F+N DDS   
Sbjct: 180 MEELTAIARPTHGLLTNIGHEHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNGDDS--- 236

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHM 292
            L+A   AL    IY          + R    C +      +    ++  V  +  G H 
Sbjct: 237 RLRAAGEALEGPVIYGTADLPGRICRARDISVCRDGRISFVLCSADRTEPVTLNFTGKHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N +    +       +    + L    P  G  +     ++ G   +++++YNAN  S
Sbjct: 297 VINAVAAAAVGLHFGLPLSRIREGLESLVPAPGWKRLE--VMDSGGLRILNDTYNANSDS 354

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+ AI  L  +    EG+RIAVLGDM E+G      H  +   +    +  +++ G    
Sbjct: 355 MRLAIDALCDLP--CEGKRIAVLGDMLELGAAGDVEHESIGRYIHGSRVDLLYVYGEKAR 412

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +    P S   H+S T + L   +   + DGD ++ K S      R++  L+ 
Sbjct: 413 LICRESPGSCQGHFS-THEELLEALLEGVHDGDAILFKGSRGMKLERVVESLIN 465


>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
 gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl ligase [Rickettsia typhi]
 gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
          Length = 448

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 240/460 (52%), Gaps = 15/460 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L  A+    I I      N +  +S+ +   + F A++G   DGHD+I  A+ K
Sbjct: 2   IWNSKTLSIALG---IEISHSVNCNAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  +       +  V+D   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GATAVIVSKQVEINDKD---KIILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L I L      +A  G++NN++G+ + LA M  D ++ IFELGM+H GEI  L  +++
Sbjct: 115 EALKILLQHDFIVFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHKGEISELVQILK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+I+ I+ AHL  F+ IEEIA AK EIF+   K     +N  ++ +  + +    L 
Sbjct: 175 PNIAMISNISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLS 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  IYSFG+SK A  +L  +K   EQ  ++  +  K +++    I  H A N    L I+
Sbjct: 235 ITNIYSFGRSK-ASAELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFANNYTGVLLII 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL  D++ A   L+     +GRG+     +N     +I + YNA+P SMKAA+  L Q+
Sbjct: 294 DILGKDIEIAANYLADISITKGRGE----IINIQNSRVICDYYNASPQSMKAALEYLKQV 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  + +++G+M E+G  SQ  H +L   +     + V+L G +   + D LP  I 
Sbjct: 350 PADN---KTSIIGEMLELGWNSQRLHEELVPYILDSGCTKVYLIGAYTKYIYDLLPTKIS 406

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             + + ++   + I       +++++K S      ++++ 
Sbjct: 407 KKFFKNVEEFIMHITDLFEYSELILIKGSRGVKLDKIVDY 446


>gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 461

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 212/472 (44%), Gaps = 36/472 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +    S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + G
Sbjct: 4   TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +         P   V++ L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSERAISGR------PYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ + RP
Sbjct: 117 MIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HIA++T I  AHL+ F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIALLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYL--------- 227

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +     +   K+C +       +  + +       G + A N ++   
Sbjct: 228 PDSQMVIRFGDHQE--LVVEDIKECKDSLTFRTNVLPRPVT--LPLTGKYNATNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+A       +    R           L+ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVPDEDIIEA---LETVKLTRHRTEWVKAANGADLLADVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I  +  G++IAVL DM E+G  S + H  L   L    I  +   G  + AL     + 
Sbjct: 341 AIPANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQALAKLASQD 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             S  V +       +  + +  ++ + L   D +++K S+S     +++ L
Sbjct: 401 YPSGRVSFFKKNNREDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRL 452


>gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 456

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 212/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELTPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F      AD         +       +       +V  + +G H   N L
Sbjct: 235 ---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLGAHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+
Sbjct: 292 AAAAAACALGVTLEGIVAGLNNVQPVKG---RAVVQIASNGTRVIDDTYNANPASINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  S    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   +         +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGVEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 456

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 128/476 (26%), Positives = 200/476 (42%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T H++   +     I       +     DSR I P + F  +KG   DGHDFI  
Sbjct: 1   MN--LTLHEVAHLVHAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA        +         P   V+DVL A   LA A   ++K  + A+TGS GK
Sbjct: 58  AFENGAVATFSEKVVEGH------PYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   LS+   TY   G+YNN IG+P T+  MP   D  + E+G  HLG+I  L+
Sbjct: 112 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P  A++T I  AHL  F    EIA  K +I +G+ + G + +  D      L    
Sbjct: 172 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPEN- 230

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +T+  FG  +     + +  +  +          ++++      G + A N ++ 
Sbjct: 231 -----QTVVRFGPDEE--IFITELIERKDSLTFRANFLEEAID--LPVTGKYNATNAMIA 281

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             +            R           ++ + YNANP +M+  +  
Sbjct: 282 AYVALKEGVSEAAIRDSFETLQLTR---NRTEWKKASNGADILSDVYNANPTAMRLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     
Sbjct: 339 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 398

Query: 420 RSI---HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     HV+Y       +  + +   ++ SL + D +++K SNS    +L+  L  
Sbjct: 399 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLGKLVEELEN 454


>gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
 gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
          Length = 465

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 205/469 (43%), Gaps = 24/469 (5%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L +A QG  + G +PQG +  I  DSR     + F A+KG  +D HDF+     +
Sbjct: 14  WTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V   +      + I    V D   AL  L    R ++    +IA+TGS GKTTT
Sbjct: 74  GCQIAIVEHPI-----DVDIAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + ++LV
Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G E I  AK+EI+  +   G   +   D F   ++  + A 
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGVAIVPAADDFTADIRNSAQAH 248

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 SFG  +  D    + +   +     +        V     G H  QN       
Sbjct: 249 SN---LSFG--QGGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGEHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  ++D  ++ L      +GR    +          ID++YNANP SM+AA  VL Q
Sbjct: 304 ALAIGIELDDIVEGLEQAQGAKGRLNFIQ----HQNHLFIDDTYNANPTSMRAAAQVLLQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G ++ V+GD+ E+G+ S   H DL   L+   +  + + G +  A       S 
Sbjct: 360 ----QQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVVVGEYANAALQGSSHSE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
            +H   T      F+   +          + K S       L+  L+E+
Sbjct: 416 KLHAFATQAEALPFLIQLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 464


>gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 464

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 121/480 (25%), Positives = 206/480 (42%), Gaps = 32/480 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + + +    IG   +  V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-QQIAEILNAKLIG-NGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV  +       + +P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGCVAVVVEREC-----EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +    ++     G+ NN +GVP+TL R+     + + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL++ G   +N    ++   +
Sbjct: 174 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +  +  +++    G   +  AD+     +     S   +      + +    +G H   
Sbjct: 233 KEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +GR    +          ID+SYNAN  SMK
Sbjct: 293 NALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDSYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +AISVL     +    RI  +GDM E+GE S   H ++A+      +  +   G     +
Sbjct: 350 SAISVLENYPAY----RIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                     H+      +  F+   ++         V++ K S S     +I+ L + F
Sbjct: 406 SQQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 460


>gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acidiphilium cryptum JF-5]
 gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium cryptum JF-5]
          Length = 451

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 174/467 (37%), Positives = 246/467 (52%), Gaps = 17/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  DL  A  G  +         G+SIDSR+IAP E F A+     DGHDF+  A
Sbjct: 1   MSGLWSARDLAVATNGTWLRGEADA--TGVSIDSRTIAPGELFVALADAR-DGHDFVPDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+V  D+ A       P   V+DV  AL +L    R RS+A ++A+TGSVGK+
Sbjct: 58  EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS+   T+A   S+NNHIGVPLTLAR+P + DF + E+GM+H GEI  L+ 
Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+ VIT I  AHL     +E IA  KAE+  G+   G   L     F   L  ++ 
Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPRG-PFLSRLARRAR 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + SFG    A+ +L + +  ++   +   +    +       G HMA N +  L
Sbjct: 231 --DGVRVVSFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L  D   A  AL  F P  GRG R R  ++    TL+DESYNA+  S++AA+ VL
Sbjct: 289 AAAAALGLDPAQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G+ +   H DLA+ +S      V+  G H+  + D LP 
Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLADAVSGV-ADLVFACGPHMRVMFDELPE 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++     L   ++++L  GDVV+VK S       ++  + ++
Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGSYGSRMRDVVAAIEDK 450


>gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
 gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
          Length = 521

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 147/531 (27%), Positives = 214/531 (40%), Gaps = 79/531 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PL +   L Q +    IGI        V  + IDSR ++    F A+KG  +DGHDF 
Sbjct: 1   MIPL-SLRQLAQVLNAELIGIEHASDHALVTQVVIDSRKLSTGCLFVALKGARFDGHDFA 59

Query: 58  LHAVQKGAGLVVVNT-------------------------DMVASIGS------------ 80
             A+  GA  ++VN                          D   S+ +            
Sbjct: 60  EEAITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNA 119

Query: 81  --------------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                         L IP   V D   AL +LA   R +  A ++A+TGS GKT+ KEM 
Sbjct: 120 TASKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMT 179

Query: 127 TIALSSIK-------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
              L   K             G+ NN IGVPLTL R+  + DF + ELG +HLGEI +  
Sbjct: 180 AAILRQCKTPTKKNSHVLYTSGNQNNDIGVPLTLLRLTAEHDFVVIELGANHLGEIAYSA 239

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP   ++  +A AHL  F  +  +A AK EIF  L   G   +N D   +   +   
Sbjct: 240 GLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWPHWQGM- 298

Query: 240 HALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             L  + ++ F  +     DF     K  S+ +   +     S+E+    +G H   N L
Sbjct: 299 --LSQQRVWRFAFNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVANAL 356

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + AD++   K L+  H   GR      A  +    L+D+SYNAN  SM AA 
Sbjct: 357 AAAALAMSVGADLEAIAKGLAQSHATPGRLFPILLAEGK---LLLDDSYNANVGSMIAAA 413

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+++     G R+  +GDM E+GE +   H  +        I  V   G     L  A
Sbjct: 414 QLLAEMP----GYRVMAVGDMGELGETAVDCHRQVGSAARQAGIDKVLSVGTLSQQLSSA 469

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466
                H H       L   ++  L    ++  ++K S S G   ++  L E
Sbjct: 470 SGNGEHFH---DQVVLTARLKQLLQAHPIITLLIKGSRSSGMENVVQALQE 517


>gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
          Length = 457

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 209/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     + +  D    + L+        
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLMPADPIVEDYLQT------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 459

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 165/464 (35%), Positives = 240/464 (51%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   LL A  G           +G+SID+R++ P + F A++G + DGHD    A
Sbjct: 1   MSALWTREALLAATGGRFSMPFDA---HGVSIDTRTLEPADLFVALQGDNGDGHDHAEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+ + D          P   V+D + AL  L   AR R   T+ A+TGSVGKT
Sbjct: 58  LARGAAGVLAHRDGPG-------PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+     +A   SYNNH GVPLTLAR+P      + E+GM+H GEI  L  
Sbjct: 111 TTKEMLRTALAPFGPVHAAYASYNNHWGVPLTLARLPESARSCVVEIGMNHAGEIAPLAA 170

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+  +H+ +   IE IA  KA +F GL   G   +  D      L A++ 
Sbjct: 171 LARPHVAIITTVERSHIGHLGSIEAIADEKAALFSGLAADGVAIMPADSPMLPRLMAQAA 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + +FG   N+  +L++ +  ++ S +++ ++G+S+       G HMA N L  L
Sbjct: 231 P---HRVMTFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAAL 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     D   A  AL  FH   GRG +   ALN G   L+DESYNA+ AS++AA+ VL
Sbjct: 288 SAVDAAGFDPHPAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                    RRI VLGD+ E+G+ + + H  LA+ ++       +  G  +  L DALP 
Sbjct: 348 RLTPAS---RRIVVLGDILELGDQAVAEHAGLAQDIAAC-ADLAFTCGPMMRHLFDALPA 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S+   +      L   + +++ DGD ++VK S       +   L
Sbjct: 404 SVRGAHEADSASLAPVVSAAIRDGDTILVKGSFGSRMCIVTAAL 447


>gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2]
 gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 217/470 (46%), Gaps = 16/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D+ +A+       V +   +G+S DSR+I  Q+ F A++G  +DGH FI   V++G
Sbjct: 7   WRVADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV               F VD+ L AL  LA   RLR+   ++AITGS GKT+T++
Sbjct: 67  VRGFVVKKGQKIPKDVPGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTRK 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M          T    G+ NN IG+PLTL  + +D ++ + E+GM+H GEI  L  +  P
Sbjct: 127 MTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLDHEWAVVEMGMNHGGEIHRLGSIALP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LG 243
            I VIT  +  HL     +E +A AKAE+   +   G+  LN DD  F +  A   A   
Sbjct: 187 DIGVITNTSHCHLEGLGTVEGVARAKAELLPHVRVHGSAVLNLDDPRFPIFSAAVRANTA 246

Query: 244 IKTIYSFGKSK-NAD-FQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
           I+ I  F   + N D           E     +    + + EV  H     M  N L   
Sbjct: 247 IENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVFLHTPARFMVSNALAAA 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G        +D   + L  F P+ G   R          T+ID++YNANP S+ AA+  L
Sbjct: 307 GAALAAGISMDVIKQGLEAFEPEPG---RMHLEPGFNHTTIIDDTYNANPGSVGAALETL 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALK 415
            +++ +G G  IAVLGDM E+G  ++ FH ++  + +   IS ++  G         A+K
Sbjct: 364 ERVTQNGVG--IAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGPMADHVIHGAVK 421

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              P S  +  + T D +   + +   +   ++VK S      ++++ L 
Sbjct: 422 AGFPGSAAM--TGTRDEIAADLLAHTPENAWILVKGSRGMRLEKIVSQLK 469


>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
 gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
          Length = 466

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 204/472 (43%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++ +A+ G  +   P   V G +  DSR       F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAEAVGGRLVAADPAALVTGPVEFDSRKAGAGGLFVAFPGEKVDGHDYAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
           AV  GA  V+   ++        +P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AVAGGAVAVLGTREVPG------VPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   D  F + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLTVRLGPTVAPPGSFNNELGHPWTALQADQDTRFLVLEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   +++ A+
Sbjct: 174 CEVVPPRISVVLNVGVAHLGEFGSVENIALAKGELVESLPADGLAVLNADDPLVDVMAAR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++ +AD +           +   +     S  V     G H   N L
Sbjct: 234 TAA----RVVRYGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL          +R          T+ID+SYNANPAS   A+
Sbjct: 290 AAAAVARELGMPLAELAAALGELGLVS--TRRMDVFERPDGVTVIDDSYNANPASTAVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +     GR +AVLG M E+GE  +  H+++  + +   +  + + G     + + 
Sbjct: 348 RALAGMRGA--GRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVVGEPAAPIHEG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                                  ++S L  GDVV+VK S     + + + L 
Sbjct: 406 ATAVEDWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALR 456


>gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
 gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
          Length = 464

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 120/480 (25%), Positives = 206/480 (42%), Gaps = 32/480 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + + +    IG   +  V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-QQIAEILNAKLIG-NGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV  +       + +P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGCVAVVVEREC-----EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +    ++     G+ NN +GVP+TL R+     + + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL++ G   +N    ++   +
Sbjct: 174 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +  +  +++    G   +  AD+     +     S   +      + +    +G H   
Sbjct: 233 KEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +GR    +          ID++YNAN  SMK
Sbjct: 293 NALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +AISVL     +    RI  +GDM E+GE S   H ++A+      +  +   G     +
Sbjct: 350 SAISVLENYPAY----RIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                     H+      +  F+   ++         V++ K S S     +I+ L + F
Sbjct: 406 SQQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 460


>gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
 gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
          Length = 457

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKELANH------PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+I KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTIYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    +IA  K +I +G+     +    D      L A       
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSDIAKGKMQIADGMSSNSLLLAPADPIVESYLPA------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQDLELTRNRTEWKKAANGADVLSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   I  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVIDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
          Length = 479

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 177/473 (37%), Positives = 252/473 (53%), Gaps = 16/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +  +A  G +          G+SID+R++ P + F A+     DGHDF+  A+ K
Sbjct: 3   LWTAAEAARATGGRA---STDWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+  +   + +   P+  VDDV  AL  +  AAR R++A ++AITGSVGKT+TK
Sbjct: 59  GAAAALVSH-VPPGVDAARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LSS  +T+A   SYNNH GVPLTLARMP D  F + E+GM+H GEI  L+ + R
Sbjct: 118 EMLRDVLSSHGRTHAAEASYNNHWGVPLTLARMPADTQFAVIEIGMNHPGEIAPLSRMAR 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+APAHL+ F  +E IA  KA IFEGLE+ G    N D +   +L A + A  
Sbjct: 178 PHVAMVTTVAPAHLAAFESLEGIAREKASIFEGLEEGGAAVYNGDLAVSPIL-ADTAARH 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + SFG+S     ++ +    +  +  E +     +       G H A N +  L + 
Sbjct: 237 AAHLLSFGESPAMHHRVTRITLKNACTVAEGRAWRSPVLFKIMVPGRHFAVNAMGVLAVT 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
                D    + +L  + P  GRG R R  L+         LID+SYNANPAS+ AA+ V
Sbjct: 297 HARGLDRAKVVTSLGQWQPGSGRGARERIVLDIVDAHVVVELIDDSYNANPASLGAALEV 356

Query: 360 LSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+   P        +GRRIA LGDM E+G    + H  LAE  ++  I  V   G  +  
Sbjct: 357 LAAAVPSNDMGRVSKGRRIAYLGDMKELGRTEAALHAALAEHPAMALIDRVHCVGPLMRH 416

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L + LP      ++ET D +   +   L  GDVV+ K S S G  R++  + +
Sbjct: 417 LWEVLPDGKRGRWTETADEMAANVARDLDAGDVVLAKGSLSMGLARVVAAIRK 469


>gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 485

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 179/473 (37%), Positives = 260/473 (54%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW   D  +A  G ++G      V+GISID+RSI   + F A+K    DGH+F+  A+ K
Sbjct: 3   LWIAPDAAKATGGKAVG---DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQALAK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V    V    +   P+  V+DVL AL  L  A R R++A ++AITGSVGKT+TK
Sbjct: 59  GAGAALVT--HVPEGVAKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS+  +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  + R
Sbjct: 117 EMLRDVLSAQGRTHASVASYNNHWGVPLTLARMPQDTEFAVIEIGMNHPGEIAPLAKMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+++ITT+A AHL  F  I+ IA+ KA I  GLE  G   LN D     +LK+K+ A+ 
Sbjct: 177 PHVSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEPDGVAILNADIETAHVLKSKAEAMH 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  ++ FG S + ++ L         + +E  + G  +       G H A N L  L   
Sbjct: 237 INAVW-FGASAD-EYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGALASA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAAISV 359
             L AD+  A ++++ + P  GRG R   AL+         LID++YNANP S+ AA+ V
Sbjct: 295 EALGADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPTSLSAALDV 354

Query: 360 LSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+            +GRRIA LGDM E+G+   + H  +A +  + ++  +   G  +  
Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGDDENAMHEAVARLSCIEHLDMIHCVGPLMRG 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +ALP +   H+ ET   +   +   L  GDVV+ K S S G  R+++ + +
Sbjct: 415 CYEALPDAKRGHWFETSAEMASTVGRDLDAGDVVLAKGSLSMGLARVVDAVRK 467


>gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 457

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGQDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
 gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
          Length = 457

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 206/471 (43%), Gaps = 30/471 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + GA
Sbjct: 5   IHEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFIETAFENGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +   ++         P   VDDVL A  +LA     ++   + A+TGS GKTTTK+M
Sbjct: 64  AVTLSEKEVANH------PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P 
Sbjct: 118 LAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         K
Sbjct: 178 TAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPVVEDYL------PTDK 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +   
Sbjct: 232 KVVRFG--QGAELEITDLVERKDSLTFKANFLNQALD--LPVTGKYNATNAMIASYVALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   +A   F   E    R           ++ + YNANP +MK  +   S I  
Sbjct: 288 EGVSEEQIRQA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
           +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +     
Sbjct: 345 NEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 405 HVYYFKKTEDRDQFEDLVKQVKESLGTNDQILLKGSNSMNLAKLVESLENE 455


>gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
 gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
          Length = 457

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 201/441 (45%), Gaps = 16/441 (3%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+ IDSR +     +  I+G + +GH F+  A+  GA  V+             + V  V
Sbjct: 28  GVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVLWERREPNPPKE--VTVILV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   AL  LA A R +    +I ITGS GKT+TK+++   ++    T   +G++NN IG
Sbjct: 86  EDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYITQKTMGNFNNEIG 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL     +V+ G+ E+GM +LGE+ FLT+LVRP IA+IT +  AHL N   +E IA 
Sbjct: 146 VPLTLLSFSQNVEVGVVEMGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIAR 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI EGL   G +  N D    +     +   G   + SFG  +  D+ + +  Q  E
Sbjct: 206 AKVEIAEGLRDGGMLIYNGDQPLLKDALRAAQLSGGIALRSFGTQQGNDYIVHEVCQQKE 265

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                +      +      IG H A N          L      A+K          R +
Sbjct: 266 GLSFYIN----DVACHLDMIGKHQAMNATAAWIAAKALQVCEAEALKGFESIEKTGLRNE 321

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 +     ++++SY +NP S  AA+  L +        ++AVLGDM E+GE S   
Sbjct: 322 LV----SFDQALILNDSYKSNPQSALAALDTLEEFDIPY---KLAVLGDMLELGETSDQI 374

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGD 445
           H  L + L  Y++  V   G        A    +H   + +    + L+ +++       
Sbjct: 375 HYQLGKDLKNYHLQEVLTIGDMARYTAQAAFNELHDVYIRHFVNKEELYSYLKPYGKKEC 434

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           ++++K S       L++ L++
Sbjct: 435 MILIKGSRGMKLDELVDWLVK 455


>gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 480

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 139/482 (28%), Positives = 214/482 (44%), Gaps = 38/482 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +      + A+     G       + +S D+R+I   + F A+KG ++DG  F+  A   
Sbjct: 1   MMMLSQAVNALHARMDGA--DVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAAMA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN D         +P+  V+D   AL +LA   R +    ++AITGS GKTT K
Sbjct: 59  GAVAAVVNRDAGLRTQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVK 118

Query: 124 EMLTIALSSIKK-----------------------TYACIGSYNNHIGVPLTLARMPVDV 160
           EML+  L    K                         A  G++NN IG+PLTL R+  + 
Sbjct: 119 EMLSAILRQKIKDDSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANH 178

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + E+GM+H  EI +LT +  P +A++     AHL     +E +A AK EIF GL+  
Sbjct: 179 RYAVIEMGMNHPNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAGLKDD 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT  +N DD+   L ++ +   G   +  F     A+ Q + W        + V+     
Sbjct: 239 GTAVINADDAHAALWRSLA---GKHRVLDFSLEHPANIQGK-WVVQGYGGELLVRTPAGE 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +V    G H A+N L        L     T +  L  F    GR +R +    +   T
Sbjct: 295 MRIVLQVPGEHNARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQRKQA---KNGAT 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID++YNANPASM AA+ VL+Q     +G+RI VLGDM E+GE +  FH ++        
Sbjct: 352 LIDDTYNANPASMHAALEVLAQA----KGKRIFVLGDMGELGEDAAQFHREIGISARELG 407

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           I  ++  G                 +  +++ L   + + L      ++K S      R+
Sbjct: 408 IERLFALGTLSAEAVREFGAG--ALHFASVEELNAALDAELDAQTTALIKGSRFMKMERV 465

Query: 461 IN 462
           + 
Sbjct: 466 VQ 467


>gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 461

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 212/472 (44%), Gaps = 36/472 (7%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +    S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + G
Sbjct: 4   TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +         P   V++ L A  KLA     + +  +IA+TGS GKT+TK+
Sbjct: 63  AVATFSERAISGR------PYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ + RP
Sbjct: 117 MIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHA 241
           HIAV+T I  AHL+ F   E+IA  K +I +G++  G +    D   D +          
Sbjct: 177 HIAVLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYL--------- 227

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + +  FG  +     +   K+C +       +  + +       G + A N ++   
Sbjct: 228 PDSQMVIRFGDHQE--LVVEDIKECKDSLTFRTNVLPRPVT--IPLTGKYNATNAMIAAY 283

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L    +  I+A       +    R           L+ + YNANP +M+  +   +
Sbjct: 284 VGKLLAVPDEDIIEA---LEAVKLTRHRTEWLKAANGADLLADVYNANPTAMRLILETFA 340

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I  +  G++IAVL DM E+G  S + H  +   L    I  +   G  + AL     + 
Sbjct: 341 AIPANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRIDQLVFYGDDIQALAKLASQD 400

Query: 421 --SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             S  V +       +  + +  ++ + L   D +++K S+S     +++ L
Sbjct: 401 YPSGRVSFFKKNNQEDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRL 452


>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
 gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
          Length = 445

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 219/463 (47%), Gaps = 30/463 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + ++G  +G  P   V   SIDSR+I   E F  +KG  +D H+FI  A +KGA
Sbjct: 4   TSQTLAKILKGSLVG-SPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+   ++    G     +  V   L +L ++A   R   K  +I + GS GKTTTKE+
Sbjct: 63  VGVISEREVDVPPGKF---LIKVRSTLESLREIAKFKRENFKGKVIGVAGSAGKTTTKEL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  LS   K Y   G+ N+ +G+PL +A   ++ DF + E G S  GEI+ L  + +PH
Sbjct: 120 LSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKNLIEITKPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +ITT+   HL  F  +E +    AE+F  +       +     F + L        + 
Sbjct: 180 VRLITTLGEEHLEGFGSLEGVIWGNAEMFCRISDNFYAVIPG--KFLDTL------FFLP 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG  +  + Q +  +   +    EV  +G+   +    +G  + +N+L    ++ +
Sbjct: 232 KKISFG--ERGELQAQNVEVSEKGVSFEV--EGEKFFISVPSLG--LVENILACFCVLKV 285

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +    +AL  F P EGR K +        F LID++YNANP S++ AI  +     
Sbjct: 286 LGFTLKEFKEALKEFSPVEGRMKVFNLK----NFILIDDTYNANPVSLRNAIKSVGAFKR 341

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV 424
                ++ +LGDM E+GE S+  H ++  +L+    I      G  +    D+  +S   
Sbjct: 342 D----KVFILGDMLELGEHSKELHEEVGRLLNTVKGIRLAIFYGDEMKYAYDSFNKSKKF 397

Query: 425 HYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLL 465
            Y++T + +  FI+ +L   +G  V++K S       +++ L 
Sbjct: 398 -YAKTKEEMLQFIEENLKEFEGCAVLIKGSRGMKLEEVVDFLR 439


>gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
 gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
          Length = 464

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 216/468 (46%), Gaps = 21/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +F  L + +    +     +  V+ ++ DSR+      FFA++G  +D H F+    Q+G
Sbjct: 5   SFAALSELLSAKEVNPPSAELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A ++VV      +  ++S+P   V +   AL +LA+  R +    + A+TGS GKTT KE
Sbjct: 65  AKILVV----EHADPAVSVPQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVKE 120

Query: 125 MLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           M    L    K         G++NN IGVPLTL R+     F + ELG +H GEI + T 
Sbjct: 121 MTAAILQQTAKNADEVLFTAGNFNNDIGVPLTLLRLTDQHRFAVIELGANHAGEIAYTTQ 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++  +APAHL+ F  ++ +A AK EI++GL + G   +N D ++  + +    
Sbjct: 181 LARPDVALVNNVAPAHLAGFGSLQGVAKAKGEIYQGLTENGIAVINQDCNYLPMWQQNIA 240

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              IK    F      AD   R  +  +      +      +E+    +G H   N L  
Sbjct: 241 QHPIKR---FSLTHSEADIYARAIQHTNIGFSFVLCTPQGEIEIELPYLGLHNVSNALAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L A +D   K L++    +GR             TL+D++YNAN  S+KAAISV
Sbjct: 298 ASLAIALGATLDDVKKGLALGKRVKGRLFPIEVNSQ---LTLLDDTYNANVDSLKAAISV 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L          ++ V+GDM E+GE ++  H  +AE     N+  V   G +   +     
Sbjct: 355 LYSAPQQV---KVLVVGDMAELGESTEQCHRQVAEAALNANLDQVMSFGQYSRVISQTCG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLL 465
              +   +E +  L  +    +  G    ++VK S S    ++I+   
Sbjct: 412 GKHYQDKAELIADLQQYAAQQMKAGKTILILVKGSRSMRMEQVIDSFK 459


>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
           ferrireducens T118]
 gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodoferax ferrireducens T118]
          Length = 480

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 204/477 (42%), Gaps = 25/477 (5%)

Query: 4   LWTFHDLLQAIQ-GHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           + T       +     + +         +  +  D+R++AP + F A++G H+D HDF+ 
Sbjct: 1   MMTLQQAASWLGNARLVNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLA 60

Query: 59  HAVQKGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            A  +GA   V       D+ A + ++ +P   V D   AL +LA   R +    +IA+T
Sbjct: 61  QAKAQGAVAAVCQASDAGDVEAKLRAVGLPGLLVPDTKLALAQLATQWRAQFTLPLIAVT 120

Query: 115 GSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M+   L + K        G+ NN IGVPLT+ R+    +  + ELGM+H 
Sbjct: 121 GSNGKTTVTQMIAAILRAYKPQAYLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P +A++      HL   + +E +A     + + L   G      DD++ 
Sbjct: 181 GEIATLAAIAQPTVALVNNAQREHLEFMATVERVAQENGSVIDALPAHGVAVFPADDTYS 240

Query: 233 ELLKAKSHALGIKTIYSF----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            L   K+   G + +  F      +  A  +  +         + V     +++      
Sbjct: 241 PLWADKA---GSRVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIA 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L  +         +    + LS F P +GR +     +     TL+D+SYNA
Sbjct: 298 GLHNVKNSLAAVACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNA 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S++AAI VL+ +     G R+ VLGDM E+G+    FH +  +      +  ++  G
Sbjct: 358 NPDSVRAAIDVLASLP----GPRLLVLGDMGEVGDQGPQFHAEAGQHARALGVESLFTLG 413

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               A   +        +      L   + + L     V+VK S      R++  +L
Sbjct: 414 ELSAAAATSFGAG---RHFADNQSLQAAVLAELPRIGSVLVKGSRFMKMERVVEAVL 467


>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
          Length = 509

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 221/471 (46%), Gaps = 23/471 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++     G             ++IDSR+++  + F A+ G   DGHD+   A  +
Sbjct: 45  VFTAQEIASITGGELSCPSDVTVTGQVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQ 104

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGK 119
           GA LV+   ++        +P   V D   AL  LA A     R +    +I +TGS GK
Sbjct: 105 GAVLVLSQKNIKG------VPCVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSAGK 158

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   L++        GS NN +G+PLT+ +     DF + E+G S +G++ +LT
Sbjct: 159 TTTKDLMGQMLATYGNVVVPAGSLNNELGLPLTVLKADETTDFLVTEMGASAVGDLHYLT 218

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +    IAV+  +  AHL  F   E +A AK+E+  GL   G   LN DD     +K  +
Sbjct: 219 SIAPLDIAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLPQGIAVLNADDHRVIAMKELA 278

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
           H      + +FG  + AD +    +  +   +  +V    G +  V    +G H   N L
Sbjct: 279 HG----QVRTFGSVRGADMRAINARTDAAGRAHFDVETTAGDTASVTLTLVGEHHVTNAL 334

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V+ L   +D A  ALS          R          T+ID+SYNANP SM+AA+
Sbjct: 335 AALTAVTALGMPLDQAAVALSAARATSPH--RMDVVDRPDGVTIIDDSYNANPDSMRAAL 392

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ ++   + R +AVLG+M E+G  S+++H D+  ++   NIS + + G     + D 
Sbjct: 393 RALATVAGR-QRRTVAVLGEMRELGPQSRTYHDDIGRLVVRLNISRLIVVGQGAQGIADG 451

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +       V     ++     +   L   DVV++K+S+  G ++L + L
Sbjct: 452 ALQEGSWGDEVVEVADLNAAHAALNDYLQPNDVVLIKASHGSGLWQLADEL 502


>gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 212/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F      AD         +       +       +V  + +G     N L
Sbjct: 235 ---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLGALNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+
Sbjct: 292 AAAAAACALGVTLEGIVAGLNNVQPVKG---RAVVQIASNGTRVIDDTYNANPASINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 208/460 (45%), Gaps = 24/460 (5%)

Query: 20  GIVPQGFVNG-----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+ P+GF +      ++ DSR + P   F A  G  +DGHDF   A+++GA  VV+N  +
Sbjct: 12  GLAPEGFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPV 71

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                  ++      D   A+  +    R +    ++ +TGSVGKTTTK+M   A++   
Sbjct: 72  EGVPAERAV---ISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAIAGFG 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T    G+ NN +G+P T+ R+  D ++ + E+GMSH GEI  L    RP + +IT I  
Sbjct: 129 NTIKTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDVGIITCIGV 188

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           +H+ N    E I  AK EI  GL +   + LN DD F       +H   ++ ++     +
Sbjct: 189 SHIGNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAALPTH---VRPVWFSLGDE 245

Query: 255 NADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           NAD      +Q  +     +  +     EV    +G H   N L      + L    +  
Sbjct: 246 NADVCALDVRQEGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALAAYAAATRLGLAPEGV 305

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I  L+ F     R    +  ++ G   +I++ YNANP SMKAA+++  +       RR A
Sbjct: 306 IAGLADFEQTGMR----QKIVHAGSMDVIEDCYNANPDSMKAALAMFKEYP---CKRRFA 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMD 431
           +LGDM E+G +S   H +L    +   ++ +   G        A   +    V ++E   
Sbjct: 359 LLGDMLELGGMSAPAHEELGRQAAEAGLTALVTYGPEAARTARAAKDAGLADVVHAEDYR 418

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                + + +  GD ++VK+S      + + L    +P  
Sbjct: 419 QAADALLARMAPGDALLVKASRGMALEKALALF---YPVC 455


>gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
 gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
          Length = 456

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 208/471 (44%), Gaps = 30/471 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     I       +     DSR I   + F  +K    DGHDFI  A + G
Sbjct: 4   TLHEVARVLAVRNDISQFEDFDLQKPEFDSRLIGKGDLFVPLKVAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VDDVLGA  KLA     +S+  ++A+TGS GKTTTK+
Sbjct: 63  AVATLSEKEVEGH------PYLLVDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ +  P
Sbjct: 117 MLAQLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T I  AHL  F    EIA  K +I +G+   G + +  D    + L         
Sbjct: 177 KAAIVTLIGEAHLEFFKDRTEIAKGKLQIADGMPAGGLLLVPADPIVEDFL------PNQ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  + AD ++ K  +  +    E     ++++      G + A N ++   +  
Sbjct: 231 QELVRFG--EGADIRITKLDERKDSLTFEANFLEEAID--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +      + F   E    R           ++ + YNANP +M+  +   S I 
Sbjct: 287 KEGVSEEAI---RASFKGLELTKNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANPNGRKLAVLADMKELGEQSIDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPL 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            HV+Y       +  + L   ++ SL + D +++K SNS    +L+  L  
Sbjct: 404 GHVYYFKKTAEEDQFEDLVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 454


>gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
 gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
          Length = 449

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 206/470 (43%), Gaps = 28/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +   A+ G  I    +     +  DSR I     F  + G   DGH+F   A
Sbjct: 1   MN--FTVKE-AAAVFGQQI--ENETPFASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   + +   +       I V  V D + A  +LA A + +    II ITGS GKT
Sbjct: 55  KDNGAIATLWSHPTIEPPQD--ILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   +TY   G++NN +GVPLT+   P D    I E+GM H GEI  L+ 
Sbjct: 113 TTKDMVEAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A IT I  AH+ N    E IA AK EI  GL+K G   +  D+   E       
Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               +TI +FG ++  D Q    ++  +Q+   V   G +       +G +  +N L+ +
Sbjct: 232 ---TQTIETFGLTEG-DLQGDIVEESQDQTIFTV--AGTTFT--LPVLGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI        +   + L+ F   +    R +         ++ + YNANP +M   +   
Sbjct: 284 GIGRHFGVADEAIKEGLAHFQLTK---NRTQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416
            ++     GRRIAVL DM E+G  S   H  +A  L       V+L G  + AL+     
Sbjct: 341 RKLP--LAGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAN 397

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            AL   +     +    L   +  +L   D +V+K SN  G   +++ L 
Sbjct: 398 TALADKVRYFAIDEKPQLIASLIETLEPSDSLVIKGSNGMGLSEVVDALK 447


>gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
 gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
          Length = 457

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L   + +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLVSQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
 gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
          Length = 457

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 209/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q ++    + + P   +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +    +         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVVTLSEKKVANQ------PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMRPGSLLLAPADSIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQTLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   +    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQNLDLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  +GL   +++SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTADEDQFEGLVKQVKASLGTNDQILLKGSNSMNLAKLVESLENE 455


>gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENE 455


>gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 451

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 211/472 (44%), Gaps = 29/472 (6%)

Query: 4   LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    +L Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV
Sbjct: 1   MMTLRLAELAQVLDARLIG--EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  ++V  ++      L+IP   V D L  L +L    R R    ++AITGS GKTT
Sbjct: 59  AAGASALLVERELP-----LAIPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM T  L       A  G++NN +GVPLTL R+     F + ELG +H GEI + T L
Sbjct: 114 VKEMATAILRQEGDVLATAGNFNNEVGVPLTLLRLEPQHRFAVMELGANHPGEIAWTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A+I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D+ F+   +A+   
Sbjct: 174 AKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGLGEGGTAIVNADNEFWPKWQAR--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            GI   +S  + +   F  R      +  +   +      + +     G H   N L   
Sbjct: 231 -GIHCAFSI-EDQRQPFHARNVVINQQGCAEFVMVTPQGEISLTLAIPGRHNVANALAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L A + +    L +  P +GR    R     G  TL+D++YNA+  S+ A I  L
Sbjct: 289 AGTLALGASLASVKAGLELMAPVKGRFCVQRW----GGLTLVDDTYNASVESVLAGIDAL 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +S    G ++ V GDM E+GE S   H  +    S   +  V   G       DA   
Sbjct: 345 TAMS----GYKVLVFGDMKELGEESAEQHARVGRHASERGLDAVLTVGEQSRHTADAAA- 399

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
                + +    LF  +   +       ++VK +       ++ ++ +   +
Sbjct: 400 ---GRHFDNKASLFEVLAQMINTHQEIAILVKGARGSRMEDIVEMVKDRQES 448


>gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
 gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
          Length = 464

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 209/475 (44%), Gaps = 31/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L Q ++G  +G   +     IS D+R    +  FF +KG  +D HD++  A+++G 
Sbjct: 5   TTQQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIEQGC 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +VV  ++      +++P   V+D   AL +LA   +       +A+TGS GKTT KEM
Sbjct: 64  VALVVERELA-----VNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118

Query: 126 LTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               L  +     +     G+ NN +GVPLTL R+  +  F + ELG +H+GEI + T +
Sbjct: 119 TAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFTVVELGANHIGEIAYTTEI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    ++   + +   
Sbjct: 179 AQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLA-HYYPEWQKEIGD 237

Query: 242 LGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +++    G+ K++  DF     +     S   +      +E+    +G H   N L  
Sbjct: 238 HELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSNALAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + AD+      L      +GR        N      ID+SYNAN  SMK+A+SV
Sbjct: 298 TALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKSAVSV 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q        RI V GDM E+G+ S + H ++A+ +    +  V   G     +     
Sbjct: 355 LKQYPAF----RIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS---- 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLLLEEF 468
                H+      +  F+   ++         V++ K S S     +I  L   F
Sbjct: 407 -GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASLCRSF 460


>gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 460

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 208/475 (43%), Gaps = 35/475 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      ++ +S D+R+I  +  F A+KG  +D HDF   A   GA 
Sbjct: 6   LSQLASVLNAELIGA--DTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122
            ++V+  +      + +P   V D   AL ++    +     +     +A+TGS GKTT 
Sbjct: 64  ALLVSKRLP-----VDLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+    L++     A  G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV
Sbjct: 119 KEISAAILATKGNVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQQEISYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A+I  +A AHL  F  ++ +A AK EIFEGL   G   +N D +   L +     L
Sbjct: 179 KPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLSDGGIAIVNLDSNDLPLWQ---PLL 235

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + +F   + +AD+   +    ++  +   +      ++V     G H   N L   
Sbjct: 236 AQHQVLTFSATASDADYHAERININAQGLACFTMCTPIGKVDVNLTLAGMHNVANALAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A +      L      +G   R      +    LID++YNA+ A++KAAI VL
Sbjct: 296 ALTISLGATLAEVKAGLETMANVKG---RLDITEPRAGLRLIDDTYNASVAAVKAAIDVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G+R  +LGDM E+G+ S + H ++ E      +  V   G     + D    
Sbjct: 353 ANFQ----GQRYFILGDMAELGDESDNLHREVGEYAQAKQLDCVMTFGRASAVVSDL--- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----D----VVVVKSSNSCGFYRLINLLLEE 467
                +      L   ++  L       D     V+VK + S     +I  L ++
Sbjct: 406 -NQGQHFTDKTALIALLKQQLQQHFSQPDFEQVTVLVKGARSSKMEDVIAALQDD 459


>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 468

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 220/470 (46%), Gaps = 14/470 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A  G  +G  P   V+G+S D+R++A  + F A+KG  +D HD +  A 
Sbjct: 7   TPHFTSDELAAATGGRWLGAPPAA-VDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +   P   V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSGAWAAAHPAPPRPALAVADTLAALGAIARFHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     +E +A AKAE++EGL   G   +N DD+    +  +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADDA---RMLKRGVA 242

Query: 242 LGIKTIYSF--GKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNML 297
            G + + +F  G+ +  D  + +   Q  E     + +  + + V   G +G H A+N  
Sbjct: 243 SG-RRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAA 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   +        + L+   P    G+R R         L+D+ YNANPASM AA+
Sbjct: 302 AAACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAAL 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALK 415
            VL  ++     R +AVLGDM E+G      H  L    +   ++ +   G      A  
Sbjct: 359 EVLRDLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAATAGVAVLAAFGPRARATAEA 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                     ++E +D L  F++  L   DV++VK S      RL+  L 
Sbjct: 419 ARAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468


>gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
 gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
          Length = 457

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPI------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 460

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 127/444 (28%), Positives = 213/444 (47%), Gaps = 18/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I+ D+R I P+  F A+ G ++D H F+  A+ KGA  +++            IP  
Sbjct: 30  IHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEKQCY---PKNVIPQI 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +   AL K+A   R ++ AT+IAITGS GKT+ KEM +  L +   T +   + NN+
Sbjct: 87  IVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCGNTISTFQNLNNN 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +     + I ELG ++  +I + T + +P+IA+I  I  +HL+ F  +  +
Sbjct: 147 IGVPLTLLNLNKSHKYAILELGANYPKDIEYTTKITKPNIALINNIYHSHLAGFKSLFGV 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK EIF GL K G    N D +++   K     L  + I +F   KN+          
Sbjct: 207 AQAKQEIFLGLRKNGIAIYNKDSNYWSKWK---KNLLTQKIINFSIKKNSTIFASNITTS 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S  ++      + V    +GYH   N L    I   +   ++     LS     + R
Sbjct: 264 NQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINIPLEIIKIGLSSLPILKNR 323

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R    +   T+I+++YNAN ASM  AI +L  IS    G ++ V GDM E+G+   
Sbjct: 324 LQIIRLNKYK---TIINDTYNANTASMIVAIKILENIS----GYKLFVAGDMLELGKNDV 376

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDG 444
            +H  +   +   NI+ V+  G     +  A  +  H + S+    +     +   ++  
Sbjct: 377 LYHKIIGNTIYNSNINEVFSIGKLSKEISIASKKGHHFYNSDELLKNLKNKLLNKKII-- 434

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
             ++VK+S S     ++  L++E+
Sbjct: 435 -TILVKASRSEKLDVIVEQLIKEY 457


>gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC
           334]
 gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei ATCC 334]
          Length = 462

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 214/468 (45%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +        V G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPAAATA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +     L      V D L A+ +LA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAADHLPVTTKLI--TLVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F   ++IA AK EI +GL+  GT   N D+    LL+ ++  +
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP---LLQERAKKI 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG                  +   V+     +      +G +   N L  L +
Sbjct: 237 TQER-ETFGLHPENTIFAHSISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRKFHVKPEIMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
            +    GR IAVLGDM E+GE S + H  LAE L    +  V+L G  + AL D L    
Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADTLAAKY 409

Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +H +  +  + +   +Q+ +   D+V++K+S+      +++ L+
Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALV 457


>gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
 gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
          Length = 453

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 211/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    +G      ++ +S DSR+I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLVGA--DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++ A           V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVQRELEADCS-----QLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  I+ +  AK EI++GL +     ++ D +  E  KA    L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVSLDSNGGEHWKA---VLADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      ++V    IG H   N L    +  
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTLIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+     +G   R      +    LID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIRHGLAHLSKVKG---RVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + +    V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
 gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
          Length = 462

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 218/468 (46%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +       V  G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +    +  +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAEDHL--PMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+    LL +++  +
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +   V+ Q   +      +G +   N L  L +
Sbjct: 237 -TQSQETFGLHPENTLFAHSISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRRFHVKPEAMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                 GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 352 FQTA--GRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409

Query: 422 --IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               VHY   +    +   +Q+ +   D+V++K+S+      ++  L+
Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALV 457


>gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
 gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
          Length = 457

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 208/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H+++QA+     + I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVVTLSEKEVANH------PYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVIRFG--QGAELEVTDLIERKDSLTFKANFLEQALD--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S IS
Sbjct: 287 QEGVSEEQIRQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIS 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
 gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
          Length = 457

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVVTLSEKEIANH------PYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTKYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D      L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVENYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDKDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVECLENE 455


>gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
 gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
          Length = 453

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 210/464 (45%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      ++ +S DSR I  +  F A+ G  +D HDF   AV  GA 
Sbjct: 6   LSQLCSVLNARLIGA--DRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V  ++             V D   AL +L      + +   +AITGS GKTT KEM+
Sbjct: 64  ALLVEREL-----DADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTALVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  I+ +  AK EI++GL       +N +    +L K     L  KT
Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLRAGAVAIVNLESHGGDLWKTD---LADKT 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +F     NADF  R  +  +   +   +      ++V    IG H   N L    +  
Sbjct: 236 VKTFSTTDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+     +G   R      +   TLID+SYNA+  +MKAA+ +L   S
Sbjct: 296 EMGASLAEIRHGLAHLAKVKG---RVDLTHLRQDITLIDDSYNASVPAMKAAVDLLGGFS 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R  +LG+M E+G+ S + H  + E  + ++   V   G     + D        
Sbjct: 353 AV----RWLILGNMAELGDESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDLCQGHHFA 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + M  +   I+       V++VK +NS G  ++   L E+F
Sbjct: 409 THQDMMTFIEQHIEQQQGRAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
 gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
          Length = 457

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIKTAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae T3T1]
          Length = 456

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 140/472 (29%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +     G   Q  V  I+ D+R       FFA+KG H+D H ++  A
Sbjct: 1   MIKLTT-QQLAQILNADLTG-DEQAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +VV      +   ++ P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VEQGAAALVVQ----QANTEIATPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H GEI 
Sbjct: 115 TVKEMTASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEID 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + THL +P  A++  +A AHL  F  IE +A AK EI+ GL + G   +N + ++ EL +
Sbjct: 175 YTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTQNGVAIINSEHNYIELWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +   +G   I  F      D++    K     S   +     S+E+    +G H  +N 
Sbjct: 235 KE---IGSHAIQYF---NGRDYKAENVKHSPNGSTFTLVSPKGSIEINLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S++AA
Sbjct: 289 LAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNEN---LLLLDDTYNANVDSLQAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI ++GDM E+GE S   H  + E      +  V   G     + +
Sbjct: 346 IDVLKGYDAF----RILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVLSYGIESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
           A+        +E        I+  L +    VV+ K S S      I  L +
Sbjct: 402 AVLGKHFTDKAELTAYALDIIKQKLQENQKVVVLAKGSRSMKMEETIYSLKD 453


>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium cylindroides T2-87]
          Length = 453

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 203/461 (44%), Gaps = 13/461 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++   +    +G      + G+ IDSR I     +  + G   DGH FI   +QKG 
Sbjct: 5   TIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSVIQKGV 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         I    VDD L AL  LA A        +I +TGS GKT+ K+M
Sbjct: 65  KATLWQKDHTPYPED--ITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSNGKTSCKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    S  KKT    G+ NN IG+PLT+  +  DV+  I E+GM + GEI FLTH+ RP 
Sbjct: 123 LYSIFSQEKKTQKTQGNRNNEIGLPLTVLDLDKDVEVAILEMGMENKGEIDFLTHIARPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +++ITTI  AH+ N  G ++IA AK EI E L+  G    + +    +    +      K
Sbjct: 183 VSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFLYDKESPEIQECLLEMDIDPSK 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + SFG + +    +           +E      + ++  + +G   A+N L  + +   
Sbjct: 243 RLVSFGFNGDISI-ISSIDYTENG--IEFYCSSLTDKITLNALGDFQAKNALPCIYVALD 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 + +K L      + R    +    +    +ID++Y +NP S KAAI  L ++  
Sbjct: 300 QKISTSSILKGLKDLEMTKMRTALLKVHDAK----IIDDTYKSNPESAKAAIDTLMKVQA 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               + IAVL DM ++G      H  +       N+  V+ +G        A   +I   
Sbjct: 356 K---KHIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYATGPLSKYTIKA-CTNIESK 411

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + ET D +   ++  L +   +++K S +     +++ L E
Sbjct: 412 WFETKDEIVEELKHLLNEDCAILIKGSRAMHMDEIVDKLKE 452


>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
 gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
          Length = 462

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 206/468 (44%), Gaps = 19/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T   L     G  IG      V+GIS DSR+I P E F  ++G  +DGHD++    ++
Sbjct: 1   MFTPEQLTTITHGRLIG-PETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTER 59

Query: 64  GAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
              + + N           ++    V D L AL  LA A R R   T+I +TGS GKTTT
Sbjct: 60  RIQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L  + +     G+ NN IG+P  L ++  +  + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLAAILDQVDQGLKTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEPGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I ++    PAHL +   +E +A AK E+ + ++  G   +N DD     L     A 
Sbjct: 180 CPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRIASLHQNPSAR 239

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  K  + +    +   +E    ++     S+E+    +G H   N L    
Sbjct: 240 RT----SFGI-KRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLKALGQHNIYNALAAAA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +    ++T  + L  F P  G   R+          LID+SYNANPAS  AA++ L 
Sbjct: 295 -GLLELVGLETIAEGLEAFVPYTG---RFHLETLSNNRLLIDDSYNANPASCAAALATLQ 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            I  +   R    LGDM E+G      H  L    +      ++L G        A  +A
Sbjct: 351 GIKGN--RRAFVALGDMLELGRDELELHRQLGIQAASV-ADRLYLLGSLTKETAGAAAEA 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              S  +  + + + +   I +   +GD++++K S      ++  LL 
Sbjct: 408 GLASEAIISATSHEEIARDIHTHAGNGDLILLKGSRGMKMEKIAALLR 455


>gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 456

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 217/472 (45%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           TF+++   ++    +   P      +  DSR I   + FF +KG   DGH FI+ A + G
Sbjct: 4   TFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VD+VL AL +LA     + K  + A+TGS GKTTTK+
Sbjct: 63  AAATLSEKELDD------YPYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + ++T I  AHL  F    EIA  K +I +G++    + +  D    + L ++ +    
Sbjct: 177 KVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGMKDGTLLVVPADKIINDFLPSQLN---- 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG  +  D  L K ++  +    E      +++      G + A N ++   +  
Sbjct: 233 --VVRFGPDE--DIFLTKLEERKDSLSFETNFLDNAID--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D   KA +          R      +    ++ + YNANP +M+  +   S I 
Sbjct: 287 KEGVTQDKIQKAFATLELTR---NRTEWKKAKNGADILSDVYNANPTAMRLILETFSTIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPR 420
            + +GR++AVL DM E+G  S+  H  +   L+   +S ++L G  + AL    K+  P 
Sbjct: 344 FNEKGRKLAVLADMKELGVDSKQMHSAMITSLNPEILSEIFLYGEDMAALFAYAKEIFPP 403

Query: 421 SIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               ++ +  +      L   ++ +L   D +++K SNS     L+  L  +
Sbjct: 404 GKAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEKLEND 455


>gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
 gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 136/478 (28%), Positives = 205/478 (42%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V G +  DSR +     F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAAVVGGQTYDIPDPAVQVTGPVVRDSREVESGSLFVAFAGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V +   + +P   VDDV  AL  LA     R  AT++A+TGS G
Sbjct: 60  -------AVVEAGAVAVLASRPVGVPAIVVDDVQTALGALARHVVERLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L S   T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLTALSATEETKFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
             L  P + ++  +  AH+  F G E+IA AK E+ EGL      G   LN DD     +
Sbjct: 173 ADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGELVEGLPPAEDGGAAILNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG+S  AD +    +  +       +       +V     G H   
Sbjct: 233 ASRTKA----RVILFGESDEADVRAENVRLTAGGQPSFSLHTPSGCSDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L    D   +ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGMSADEIARALSEAGSLSRW--RMEVTERPDGVTVVNDAYNANPESMR 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
           AA+   +  +     R  AVLG M E+G+ + + H  +  +    N+  +   G      
Sbjct: 347 AALR--ALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASW 404

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 405 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 461


>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
 gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
          Length = 450

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 221/462 (47%), Gaps = 23/462 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL       I   P   V+GI+ DSRSI   +AF A+KG +++GHDFI  A++KGA 
Sbjct: 10  LAQLLSLQDNGDISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIEKGAA 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+  +  +  S +IPVF V + L    +LA   R +    +IAITGSVGKTTTKE++
Sbjct: 70  TLIVDQPVSVN-SSSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSVGKTTTKELI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++  K +  + +YNN IGVP TL  +    +  + E+GM   GEI  L  + RP I
Sbjct: 129 ASVLATQGKVHKTLANYNNEIGVPKTLLELDETHNSAVIEMGMRGRGEIALLAQITRPTI 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT +  AH+        IA AK E+      +    LNYD     LL   +  +    
Sbjct: 189 AVITNVGTAHIGRLGSEAAIAEAKCELLAESPSSSIAVLNYDHP---LLTETAKRVWQGE 245

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             ++G S   D                +++ G  ++      G H A N +  L +  IL
Sbjct: 246 TITYGFS-GGDIVGELLDLT------TLRVNG--LDFNLPLSGRHHALNFMAALAVAKIL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  T+++     +   GR KRY+ A       L+DE+YNA   SM AA+ +L      
Sbjct: 297 GIDW-TSLQEGIKVNLPSGRAKRYQLAT---DILLLDETYNAGLESMLAALDLLKATPGQ 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHV 424
              R IAVLG M E+G  S+  H  + E +    I  +++         + +A   ++  
Sbjct: 353 ---RHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIAEAA-TAVDC 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +T   L   ++  +  GD ++ K+S+S G  R++  L++
Sbjct: 409 ECFQTHADLINRLKEVIDFGDRILCKASHSVGLNRVVEELIQ 450


>gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum
           aromaticum EbN1]
 gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Aromatoleum aromaticum EbN1]
          Length = 466

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 200/469 (42%), Gaps = 25/469 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T H+  QA+    +     G  + +  DSR I   + F A++G  +DGH+F++ A   G
Sbjct: 1   MTLHEAAQALG---VVATMPGNFSSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADG 57

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   +V+     +      +P+  V+D   AL +LA   R R +  +I +TGS GKTT K
Sbjct: 58  AAAALVDARWAGTQPVPSPLPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVK 117

Query: 124 EMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           EM T  L +  +          A  G+ NN IG+PLTL  +       I E+GM+  GEI
Sbjct: 118 EMCTAVLRAQARRDGHGAEAVLATAGNLNNDIGLPLTLLELRSSHRAAIVEMGMNRPGEI 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  L RP +AV+T    AHL     +  IA  K  I+E L   G   +N DD+     
Sbjct: 178 AYLAGLARPTVAVVTNAQRAHLQGMGTVIGIAREKGAIYEALGPDGVAVINADDTQAGYW 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  + A   +    F  +  AD    +       S + +      + V     G H A+N
Sbjct: 238 RELNAA---RRTLVFSLTPRADV-AGECTLRGLGSHLVMTTPAGRIAVDLQVPGEHNARN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                       A  +   + L+ +    GR +R           ++D+SYNANP S++A
Sbjct: 294 ATGAAAACLAAGASPEAVAEGLAAYTGTRGRLQRR---AGPNGAVVLDDSYNANPDSLRA 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I VL+       G++I VLGDM E+G  S   H ++        +  ++  G       
Sbjct: 351 GIDVLAATP----GQKILVLGDMGEIGWTSAQVHDEIGGYAKSKGVDALFALGEMSAVAA 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    H+  +++ L   +   L    VV+VK S      R+ + L
Sbjct: 407 SNFGGG--GHHFASVEALVAALTRKLDGDTVVLVKGSRFMRMERVADAL 453


>gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
 gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
          Length = 449

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 207/470 (44%), Gaps = 28/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +   A+ G  I    +  +  +  DSR I     F  + G   DGH+F   A
Sbjct: 1   MN--FTVKE-AAAVFGQQI--ENETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   + +   +       I V  V D + A  +LA A + +    II ITGS GKT
Sbjct: 55  KDNGAIATLWSHPTIEPPQD--ILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   +TY   G++NN +GVPLT+   P D    I E+GM H GEI  L+ 
Sbjct: 113 TTKDMVEAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A IT I  AH+ N    E IA AK EI  GL+K G   +  D+   E       
Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNL- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               +TI +FG ++  D Q    ++  +Q+   V   G +       +G +  +N L+ +
Sbjct: 232 ---TQTIETFGLTEG-DLQGDIVEESQDQTIFTV--AGTTFT--LPVLGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI        +   + L+ F   +    R +         ++ + YNANP +M   +   
Sbjct: 284 GIGRHFGVADEAIKEGLAHFQLTK---NRTQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416
            ++     GRRIAVL DM E+G  S   H  +A  L       V+L G  + AL+     
Sbjct: 341 RKLP--LAGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAN 397

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            AL   +     +    L   +  +L   D +V+K SN  G   +++ L 
Sbjct: 398 TALADKVRYFAIDEKPQLIASLIETLEPSDSLVIKGSNGMGLSEVVDALK 447


>gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 459

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 127/447 (28%), Positives = 207/447 (46%), Gaps = 21/447 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +N I  DSR     + F A+ G ++D HDF+   + KGA  +V   D V   G    
Sbjct: 26  NQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALVSRDDFVGVSGC--- 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACI 140
               VDD L AL KLA A R      +  ITGS GKTT KEML   L          A  
Sbjct: 83  --LKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLATVLREKFGADAVLATA 140

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-N 199
           G++NNHIG+PLTL  +  +  + + E+GM+H GE+  LT + +P++A++     AH+   
Sbjct: 141 GNFNNHIGLPLTLLNLRENHRYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCG 200

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F+G+++IA AK+EI++G+++ G   L  DD+   + +A    L ++T  +FG ++  D  
Sbjct: 201 FNGVDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQAACKNLNLQT-QTFGFAQG-DIH 258

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                     S  ++    + + +     G H   N      +       +    + L+ 
Sbjct: 259 AENLVLQPLASEFDLIQGSECVHITLPVAGRHNVSNACAAAALALAGGVKLTEIARGLAN 318

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F   +G   R +        T++D++YNANP SMKAA+ VL+++       R+ V+GDM 
Sbjct: 319 FANIKG---RLQVKHGIKNSTILDDTYNANPDSMKAALDVLAKMPAP----RVFVMGDMG 371

Query: 380 EMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           E+GE  +   H ++        I   +  G + +   +         +    D L L + 
Sbjct: 372 ELGENEAPKMHEEIGIYAKNLGIELAYFVGENSVQAAEKF--GADGLWFVDKDPLILSLT 429

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465
             L +   V+VK S       ++  L+
Sbjct: 430 HDLAENASVLVKGSRFMKMEEVVMALM 456


>gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
 gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
          Length = 470

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 182/469 (38%), Positives = 260/469 (55%), Gaps = 15/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G +IG      VNGISID+RSIA  + F A+K    DGHDF+  A++K
Sbjct: 3   LWTAEETAAATGGVAIG---DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+            P+  V+DV   L  L  A R R+ A +IA+TGSVGKT+TK
Sbjct: 59  GAGAALVSRRPEGVSED--APLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS   +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L    R
Sbjct: 117 EMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+AP HL  F GIE IA+ KA I +GLE  G   LN D +   +L+A +    
Sbjct: 177 PHVAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEPGGVAVLNADIAEAPILQAVA-GRA 235

Query: 244 IKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMT 299
            + +  FG  +      ++L       +++  EV L G     +    +G H A N L  
Sbjct: 236 AQDVQWFGTGQGPIAPSYRLVATTLRGDETEAEVTLPGGQGHRLQIQSLGAHFAMNALGA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAI 357
           L  ++ L  D+  A+++LS++ P  GRG R   +L   QG   L+D+SYNANP S+ AA+
Sbjct: 296 LACLAALDLDLTKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAAL 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +VL+      EGRRIA LGDM E+G    + H  LA++ ++ ++  V   G  + AL  A
Sbjct: 356 AVLAATP--CEGRRIAYLGDMKELGPQEAALHAALADLPAMADLDAVHCIGPLMGALHAA 413

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           LP      +  +   +   +   +  GDVV+ K S S    ++++ + E
Sbjct: 414 LPADKRRGHYASSADVLADLPGQIGAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
 gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54]
 gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
          Length = 457

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 204/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
 gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
          Length = 469

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 223/468 (47%), Gaps = 22/468 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
               L A +  +         + +S D+RS+ P   F A+ GP++D + ++  AV  GA 
Sbjct: 12  LEQTLSATRVDAQDGTLPEVFHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGAS 71

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +     S+    IP++ V D L A+ +LA A R    A  I ITGS GKTT KEML
Sbjct: 72  GILCSRPPAQSLP---IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEML 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            + +SS  +T    G+ NNHIG+PLTL   P D    + E+GMS  GEI  L  L +P I
Sbjct: 129 GLIVSSRYRTGITRGNLNNHIGLPLTLLNCPSDRTHLVLEMGMSAPGEIAHLAELAQPQI 188

Query: 187 AVITTIAPAHLSNFSG------IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++T I  AH++ F G      +  IA AK E+ + L   G   L   D    LL++ + 
Sbjct: 189 GIVTNILAAHVAGFGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTG 248

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLM 298
                 I SFG +S  AD          +     + L  G+   +   G G H+  N + 
Sbjct: 249 CA----ILSFGPQSSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVA 304

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L  D     + LS F  ++GRG        Q    +++++YNAN  +M+ A+ 
Sbjct: 305 ACAAAYGLGLDAAAMQEGLSRFKLQKGRGS---VEHGQVGCRILNDTYNANVGAMRVALE 361

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            LS ++P  +  RIAVLGDM E+GE + + H +LA+ +    I  ++L+G H+ AL  AL
Sbjct: 362 ALSHMAPAPQ--RIAVLGDMLELGEAADTLHAELAQTILALGIQRIFLAGPHMAALYQAL 419

Query: 419 PR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                + + +      L   +   +  GD V+VK S      R++  L
Sbjct: 420 QSSPGLQLFHYADPVALAKDLSHYVGHGDAVLVKGSRGMRMERVVEAL 467


>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 208/466 (44%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++   +    I        +G+SIDSR+I   + F A+ GP +DGHD++   
Sbjct: 1   MLKALQLSEVSAPLDARLIAG--DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    +   ++P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVAALVERE----VPDSTLPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEI +   
Sbjct: 115 TVKEMLASILRTRGPVHATRGNLNNDLGAPLTLLELAPEHTAAVIELGASRIGEIAYTVA 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A+I     AH+  F G E+I  AK EI EGL+  G   LN DD  F + KA++ 
Sbjct: 175 MTRPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDSAGIAVLNLDDKAFPIWKARAA 234

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               + + SF     +ADF      + +      ++        V  + +G H   N L 
Sbjct: 235 G---RQVLSFALTDSSADFFASDIGRDARGCPSFKLHSPKGVEAVQLNLLGTHNVANALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   +   +  L+   P +G   R    L +    +ID++YNANP SM AA+ 
Sbjct: 292 AAAAAHAMGVSLFGIVTGLNAVQPVKG---RTVAQLAKNGMRVIDDTYNANPTSMCAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGD+ E+GE ++  H ++    +   +S ++  G  +     A 
Sbjct: 349 ILAGFS----GRTVLVLGDIGELGEWAEQGHREVGAYAAG-KVSALYAVGPMMAHAVAAF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               H  +  +   L   +         +++K S S     ++  L
Sbjct: 404 --GEHARHFASQADLIAALGVEQDPNTTILIKGSRSAVMENIVAAL 447


>gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
 gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
          Length = 456

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +    +         P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKRVANH------PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   KA   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHKA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
 gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
          Length = 455

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 218/468 (46%), Gaps = 28/468 (5%)

Query: 6   TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  ++ + +       + I  Q    G++ D+R++   E F A+ G  +DGH+F   AV+
Sbjct: 7   SLGEIAKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQAVE 66

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V   + +    +++P   V D L A   L    R +    ++AITGSVGKTTT
Sbjct: 67  KGAIATIVKKGVFSKT--VTLPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++  ALS     +    +YNN IGVP TL  +  + D+ + E+GM  L EI  LT + 
Sbjct: 125 KELVAAALSQFGTVFKTRANYNNEIGVPKTLLGLTTEHDYAVVEMGMRGLEEIALLTQIA 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A+IT +  AH+        IA AK E+   L   GT  LN+DD+    L + +   
Sbjct: 185 KPTVALITNVGTAHIGRLGSRAAIAQAKCELLRELPTDGTAVLNHDDA---RLMSTAARF 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T  ++G            +     S + V      +++     G H A N+L  +  
Sbjct: 242 WSGTQITYGLEGG------DVRGQIAGSDIIVD----GVKIPLPLPGRHNALNLLSAIAT 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  +     +  SV     GR +R++         L+DE+YNA   +  AA+ +L+ 
Sbjct: 292 LKALNLNWQQLSQGFSV-PMPAGRSQRHQLP---NDILLLDETYNAGAEATIAALELLAD 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPR 420
                  R IAVLG M E+G  S   H  + + ++   +  + +        A+ D+  R
Sbjct: 348 QP---GTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLILADPIEAKAMADSA-R 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           S+     +  D L   +++ L  GD ++ K+S S    ++++ LL++F
Sbjct: 404 SVPSQQFDNHDQLAQCLKAQLQAGDRLLFKASRSVEMDKVVDQLLKDF 451


>gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 442

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 200/458 (43%), Gaps = 29/458 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V  +S DSR    +  FFA+KG ++D H ++  A ++G    VV      +I  
Sbjct: 2   GDGTVTVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEGNIAR 61

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136
                  V D   AL +LA   R +    ++A+TGS GKTT KEM+   L          
Sbjct: 62  -----LIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDV 116

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G++NN IGVPLTL R+     F + ELG +H+GEI + T L +P +A++  +  AH
Sbjct: 117 LFTQGNFNNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAH 176

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKN 255
           L  F  I+ +A+AK EIF GL K G   +N   ++ +  +A    +G   +  F   +  
Sbjct: 177 LEGFGSIDGVATAKGEIFRGLTKNGVAIINLAHNYQQKWQAD---IGRHAVQYFAYDNPR 233

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           ADF   +     + +   +      +++    +G H   N L    +   + A      K
Sbjct: 234 ADFYAEQIHFSEQGASFLLHTPQGRVQINSPYLGEHNISNALAATALSMNVGATTAQVKK 293

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L      +GR    +   N     L+D++YNAN  SMK+AISVL +        R+ V+
Sbjct: 294 GLETPSLVKGRLFPIQPCEN---LLLLDDTYNANVGSMKSAISVLQKYPAF----RVFVV 346

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G+ +Q  H ++ E      +  V   G     +           +      L  
Sbjct: 347 GDMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAV----NSGRHFTDKTELVT 402

Query: 436 FI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++     Q       VV+VK S S     +I+LL   F
Sbjct: 403 YLTPIIQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 440


>gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPI------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
 gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 462

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 217/468 (46%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +       V  G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +    +  +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAEDHL--PMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+    LL +++  +
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +   V+ Q   +      +G +   N L  L +
Sbjct: 237 -TQSQETFGLHPENTLFAHSISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL  F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRRFHVKPEAMQKALVHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                 GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 352 FQTA--GRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409

Query: 422 --IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               VHY   +    +   +Q+ +   D+V++K+S+      ++  L+
Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALV 457


>gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK72]
          Length = 456

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 204/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YLLVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL + G + +  D    E L          
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRENGLLIVPADKIVNEFLPTGCD----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++       E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKNSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 463

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 217/468 (46%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +       V  G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 4   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +    +  +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 63  GAVATFVAEDHL--PMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 121 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+    LL +++  +
Sbjct: 181 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +   V+ Q   +      +G +   N L  L +
Sbjct: 238 -TQSQETFGLHPENTLFAHSISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL  F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 296 GRRFHVKPEAMQKALVHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                 GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 353 FQTA--GRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 410

Query: 422 --IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               VHY   +    +   +Q+ +   D+V++K+S+      ++  L+
Sbjct: 411 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALV 458


>gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 457

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 204/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAYLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 457

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     +++       G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQAL--YLPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455


>gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 204/474 (43%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+          D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLFLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAVNGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457


>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
 gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
          Length = 454

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 217/464 (46%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA          +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYRNIND---YPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEIR LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DD     +K + + L  K
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQE-YKLPEK 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I +FG   ++D+++   K     S   +             +G+H   N  M++ +  +
Sbjct: 241 NI-TFGIKPDSDYRMEMIKADETGSTFSIN----DHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R +          F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDIAKGLKNIELTGMRNELILL----DKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|51246753|ref|YP_066637.1| putative bifunctional
            UDP-N-acetylmuramoylalanyl-D-glutamate--2,
            6-diaminopimelate
            ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
            ligase [Desulfotalea psychrophila LSv54]
 gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
            [Desulfotalea psychrophila LSv54]
          Length = 1014

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 133/481 (27%), Positives = 209/481 (43%), Gaps = 36/481 (7%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            WT   L+ A  G  IG +    + G ++ DSRS+     F A++G ++DGH ++   V  
Sbjct: 542  WTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAA 601

Query: 64   GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGK 119
            GA  +VV      +   L+ P   V D   AL  +A A R      +K  ++ ITGS GK
Sbjct: 602  GAACLVVEK----ARPDLTCPQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGK 657

Query: 120  TTTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            TT KEM    L+S+                G++NN IG+PL+L  +       + E+GM+
Sbjct: 658  TTIKEMTASILASLWPAGAEYPENVVLKTEGNFNNLIGLPLSLLPLDNMHRAAVLEMGMN 717

Query: 171  HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              GEI  L  + +P I  +  +  AHLS    IE +A AK E+F        + +N DD 
Sbjct: 718  SPGEIARLAEIAQPDICCVANVHAAHLSGLGSIEGVARAKEELFAHAPVDSILVVNLDDP 777

Query: 231  FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIG 289
                +         K  YS   + +AD            S    + L  +S  V    +G
Sbjct: 778  HVVEMAKGYEQK--KICYSLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLDTLG 835

Query: 290  YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             H   N L   GI     A        L  +     R +R R + N   +T+I + YNAN
Sbjct: 836  EHNVSNALAAAGIALAAGASPQQIALGLGSYKTPSKRLERIRTSCN---WTIISDCYNAN 892

Query: 350  PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            PASM A +  L+ ++     ++IA++GDM E+GE ++  H  +  +    ++ ++ + G 
Sbjct: 893  PASMSAGLRTLATVAGE---KKIAIVGDMLELGEFAEEAHRQIGSLAGELSLDYLLIVGE 949

Query: 410  HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRL 460
                L+ A   S      V    + + +  ++Q+   DG     D+V +K S       L
Sbjct: 950  FASFLQQAALNSGMGKEQVLVFPSKEAIIDWLQAYQADGGLGEKDIVFIKGSRGMQLETL 1009

Query: 461  I 461
            I
Sbjct: 1010 I 1010



 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 89/408 (21%), Positives = 153/408 (37%), Gaps = 37/408 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V  ++ DSR +A    F A +G   DGH ++  A+ +G  +V+V    V+       P 
Sbjct: 39  LVADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYAHCPA 98

Query: 85  -VFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V  V D   A  K+          K +++ ITG+ GKTT   +L   L+ +      IG
Sbjct: 99  LVIEVADSQAAYGKILANYFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLGHQVGVIG 158

Query: 142 SYNNH----------IGVPLT---------LARMPVD--VDFGIFELGMSHLGEIRFLTH 180
           + NN           I   LT         L R   D  VD  I E+    + + R    
Sbjct: 159 TVNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVIMEVSSHAISQARI--G 216

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFE---LLK 236
            +R  +A+ T ++  HL     +E+  SAK  +F   L++ G   +  D    +   L +
Sbjct: 217 ALRFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQTEFLQR 276

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMAQ 294
                 G     S+G+   +D QL  ++    ++   V+L    + +E     +G     
Sbjct: 277 LHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLVGRFNID 336

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASM 353
           N+L  +     L        + +       GR +R +          ++   Y   P ++
Sbjct: 337 NLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVDYAHTPDAL 396

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +S L  +     G  IAV G   +  +  +     +A  L+   I
Sbjct: 397 DKLLSTLGDVP---HGDLIAVFGCGGDRDKGKRPLMGAVAARLADVVI 441


>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
 gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
          Length = 476

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/445 (29%), Positives = 195/445 (43%), Gaps = 15/445 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85
           + IDSR       F A+ G   DGH F+      GA   VV+ +     G+         
Sbjct: 34  VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD + A  +LA A R R    +I I GS GKTTTKEML   LS+        G+YNN
Sbjct: 94  LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGNYNN 153

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL +M  D +  + E+G++H GE+ FL+ L +P   ++T I   HL  F  ++ 
Sbjct: 154 HLGVPLTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNIGHEHLEFFGSLDG 213

Query: 206 IASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +A A+A +F  LE   GT F+N DD     L A   +L  KT Y         +   +  
Sbjct: 214 VADAEAALFRYLEAHGGTAFVNLDDH---RLAAAGASLSRKTGYGAQPGAGRAWWAEQIG 270

Query: 265 QCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                  S+      G    V    +G H   N +    + +          + L    P
Sbjct: 271 ADRVGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGLAPAHIAEGLGTLLP 330

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +G  KR       G   +++++YNANP S++ A+  L+ I     GRRIAVLGDM E+G
Sbjct: 331 AKGW-KRMEL-FEDGGIVVLNDTYNANPDSVRLALDTLAAI--ECRGRRIAVLGDMLELG 386

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + S   H  +   +    +      G     + +        H+  TMD L  F+   + 
Sbjct: 387 DNSAIEHESIGRYIRQLPLDACLTLGDAAQLICEQAGGRCLRHFG-TMDELRGFLSEYVQ 445

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
            GD ++ K S         + L+++
Sbjct: 446 PGDALLFKGSRGMKLELAADDLIKQ 470


>gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
 gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
          Length = 454

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 215/468 (45%), Gaps = 23/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +     G  IG      +  +S D+RSI     F A+ G  +D H+F   AV+ GA
Sbjct: 5   TLSQIADITGGERIGN--DLSIESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V   +  ++  + +      D   AL ++A       +   +AITGS GKTT KEM
Sbjct: 63  GALLVQKRVNVNVPQVVV-----GDSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T LV+P 
Sbjct: 118 VASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +           L  K
Sbjct: 178 IAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGGAKW---DEVLADK 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + +F +S  +A F        +   +  ++ +    + +E+    IG H   N +    
Sbjct: 235 NVITFSQSNADAYFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASI 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   + A ++     L   +  +G   R           LID+SYNA+  +MKAA+ +L+
Sbjct: 295 IALKMGATLEEIRSGLKHLNKVKG---RVEVEELSDKIKLIDDSYNASVPAMKAAVDLLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G+R  +LG+M E+GE S + H  + E  +     HV   G     + + L   
Sbjct: 352 AFQ----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDG 406

Query: 422 IHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           IH   + E +D +   +  ++ +   ++VK +N    + +   L E +
Sbjct: 407 IHFETHQEMIDYIKQHLDQAVPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 445

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 223/475 (46%), Gaps = 35/475 (7%)

Query: 1   MNPLWTFHDLLQA-IQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T  DLLQ  +QG  H +G+     V  I  DSR + P   F A++G  +DGH+FI
Sbjct: 1   MLTLRTVADLLQTPLQGDPHLLGLP----VQAICTDSRQLQPGSVFVALRGERFDGHNFI 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA  V+    +         P F V D L A  ++A   R +   +++AITGS 
Sbjct: 57  PQALARGAVAVISQRPVAG-------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSA 109

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML  ALS          ++NN IGV  TL +M  +  F + E+ M   GEIR 
Sbjct: 110 GKTTTKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPEHQFVVLEMAMRGPGEIRR 169

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P  A+IT I  AH+        IA+AK E+ + L   G   LN +D    LL +
Sbjct: 170 LAQMAQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQELG-QGVALLNGEDP---LLLS 225

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + +L      ++G  +         +   +     V ++G ++       G H A N +
Sbjct: 226 TAASLWSGQTLTYGLDQG------DLRGEWDPQAQTVTVEGLTLP--VPLPGRHHALNWM 277

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  +  L  D +   + +++  P EGR +  + A   G   + DE+YNA+P +M AA+
Sbjct: 278 GVLAALRSLGLDWERLREPIALPTPLEGRNRHLKLA---GDVEIWDETYNASPEAMIAAL 334

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALK 415
            +L+Q       RR A+LG M E+GE +   + ++    +   +  + L      +  L 
Sbjct: 335 HLLAQTP---GKRRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLDPEGEMQPLL 391

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           D  P +      E +  L   +   +  GD ++ K++ +    R+++  L+E+ A
Sbjct: 392 DQKP-AAQTERCEEVSELLEILLHHVQAGDRLLFKAARAVELERVLHRFLQEWQA 445


>gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
 gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV200]
 gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 207/474 (43%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENEAK 457


>gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
 gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
          Length = 455

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 208/472 (44%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLG--LPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL KLA A R      +  ITGS GKT
Sbjct: 58  LAAGATAVVVSREDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLACVLRHRFGNEAVLATAGNFNNHIGLPLTLLKLNEKHRYSVIEMGMNHFGELSL 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT +  P++A++     AH+   F G+ +IA AK+EI+EGL   G   +  +D+     +
Sbjct: 174 LTQIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLSDGIALIPCEDANIATFE 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +  L  +   +FG +   D      +        ++    + + VV    G H   N 
Sbjct: 234 AATAQLNAQ---TFGVASG-DVHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +       +      L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 VAAAALALAAGLSLAEVSDGLKNFSNIKG---RLNIKQGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+ +       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLAAMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GAEGLWFADKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452


>gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
 gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
          Length = 455

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 213/472 (45%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     + +     +N    DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVARVVGAKNDVTVFLDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L +   ++ +       P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AALTLSEKEVASH------PYILVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTNYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T I  AHL+ F    EIA  K +I +G+ + G +    D      L  K      
Sbjct: 177 KTAIVTLIGEAHLAFFKDRSEIAKGKLQIVDGMPEGGLLLAPSDSIVDSYLPTK------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 QQVVRFG--QGAELEVTDLVERKDSLTFKTNFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVPEEQIHQA---FQNLELTRNRTEWKKATNGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G+++AVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKLAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + +   ++ SL   D +++K SNS    +L+  L E+
Sbjct: 404 GHVYYFKKTADEDQFEAMTKQVKESLGAHDQILLKGSNSMNLAKLVESLQED 455


>gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 467

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 215/467 (46%), Gaps = 24/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + + ++G  IG      ++ +S D+R+      F A+KG ++D HDF+  A+ KGA
Sbjct: 5   SLKWIAEQVEGRLIG--SDCTIDAVSTDTRADLTDALFIALKGKNFDAHDFVEQAIAKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++    + +           V++   AL +L  A + +     +A+TGS GKTT KEM
Sbjct: 63  AAIICEKKVDSECR-----QIIVENSRHALGRLGAAIKAKVAPKTVAVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS      A  G++NN IGVPLTL R+  +  + + ELG +H GEI + T LV+P 
Sbjct: 118 LAAILSIRHPVLATQGNFNNDIGVPLTLLRLQEEHKYAVVELGANHPGEISYTTDLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  ++ AH+  F  +  +A AK EIF G+   GT     D  F+   +     +  K
Sbjct: 178 VAILNNVSAAHVEGFGSLHGVARAKTEIFRGVGGQGTAITPRDSEFYPCWQRACSDMQWK 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              +FG S +AD         SE      + L G++ ++     G H   N L      S
Sbjct: 238 ---TFGLSDSADVYASDVTLNSEGHPSFTLHLGGETKQLELKLSGRHNVLNALSAAAAAS 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++     L    P +G   R           +ID++YNA+ AS KAA+ +L    
Sbjct: 295 ELGISLNDIANGLQQVQPAQG---RLTTIKVSDHLRIIDDTYNASVASTKAALDLLGS-- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G RI VLGDM E+G  ++++H D+ E      I +++  G    +  +        
Sbjct: 350 --YQGYRIFVLGDMGELGADARAYHEDIGEHAIGSGIDNLYSLGVLSQSASEVFNGHGGK 407

Query: 425 HYSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLE 466
           H+  ++  L   +   L +        V+VK S S    R++  + +
Sbjct: 408 HFG-SLQSLVESVLQRLTEQTGKQPVTVLVKGSRSAHMERVVAAIQQ 453


>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 454

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 216/464 (46%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA       K  +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYRNIND---YPVIEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEIR LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DDS    +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDSILREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG   ++D+++   K     S   +             +G+H   N  M++ +  +
Sbjct: 240 KTITFGIKPDSDYRMEMIKADETGSTFSIN----DHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R +          F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDIAKGLKNIELTGMRNELILL----DKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 139/461 (30%), Positives = 217/461 (47%), Gaps = 23/461 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL       I   P   V+GI+ DSRSI   +AF A+KG +++GHDFI  A+ +GA 
Sbjct: 10  LAQLLSLQDKADISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIARGAA 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+  +  +  S +IPVF V + L    +LA   R +    +IAITGSVGKTTTKE++
Sbjct: 70  ALIVDQPVSVNYSS-NIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTTTKELI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++  K +  + +YNN IGVP TL  +    D  + E+GM   GEI  L  + +P I
Sbjct: 129 ASVLATRGKVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTI 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT +  AH+        IA AK E+      +    LNYD     LL   +  +    
Sbjct: 189 AVITNVGTAHIGRLGSESAIAEAKCELLSESPSSSIAVLNYDHP---LLTETAKRVWQGE 245

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             ++G      F      +  + + + V      ++      G H A N +  L +  IL
Sbjct: 246 TITYGF-----FGGDIVGELLDLTTLRVN----GLDFNLPLSGRHHALNFMAALAVAKIL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  T+++     +   GR KRY+         L+DE+YNA   SM AA+ +L      
Sbjct: 297 GIDW-TSLQQGIKVNLPSGRAKRYQLEP---DILLLDETYNAGLESMLAALDLLKATPGQ 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHV 424
              R +AVLG M E+G  S+  H  + E +    I  +++         + +A    +  
Sbjct: 353 ---RHLAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIAEAA-TGVAC 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +T   L   ++  +  GD ++ K+S+S G  R++  L+
Sbjct: 409 ECFQTHADLINRLKEVIDSGDRILCKASHSVGLNRVVEELI 449


>gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
 gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
          Length = 478

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 173/472 (36%), Positives = 246/472 (52%), Gaps = 17/472 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW+  + + A QG S          G+SID+R++ P + F A+     DGH+F+  A+ K
Sbjct: 3   LWSAKEAVAATQGRS---TADWQATGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQALAK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   +        P+  V+DV   L  L  AAR RS+A ++A+TGSVGKT+TK
Sbjct: 59  GAAAALVSR--IPEGLPAEAPLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L    +T+A   SYNNH GVPLTLARMPVD +F + E+GM+H GEI  L  + R
Sbjct: 117 EMLRDVLGHQGRTHAAEASYNNHWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLACMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVITT+A AHL  F  I+ IA  KA IFEGLE  G   +N D +   +L+AK+    
Sbjct: 177 PHVAVITTVAAAHLEAFENIDGIAKEKASIFEGLEPGGVAVINADIATTPILRAKAAQHA 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I SFG ++ A  +L   +     +    +     +       G H A N L  L + 
Sbjct: 237 AR-ILSFGTARGAHHRLLNVELHDHVTVGHARAWRSPLVYKVGVPGRHFAMNALAVLAVA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISV 359
            +L  D   A+  L+ + P  GRG R       A +     LID+++NANP SM AA+ V
Sbjct: 296 QVLGCDRAVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAALEV 355

Query: 360 LSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+   P         GRRIA+LGDM E+G    + H  LA++  +  I+ +   G  + A
Sbjct: 356 LAAAHPRDGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHCVGPRMRA 415

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L D LP +    +  + + L       +  GDVV+VK S       ++  L 
Sbjct: 416 LWDILPEARRGRWVASAEELAAQAHRLIDAGDVVLVKGSKGSRVSLVVEALR 467


>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 464

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 208/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   + G   G      V   S D+R       FFA+KG H+D H ++ +A
Sbjct: 1   MIKLTT-NEIADILSGQLSGNGG-VMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGCVAVVVEREC-----EISVPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTVCEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYTGSDQDSYADFWAENVELDLSGSHFTLHSPQGEIEINLPYLGAHNVS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD++     L      +GR        +     LID++YNAN  SMK
Sbjct: 293 NALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEVNQH---CLLIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A++VL          RI  +GDM E+G+ S + H  +A+ +   N+  V   G     +
Sbjct: 350 SAVAVLKNYPAF----RIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGQQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----GETAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
 gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 208/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLTPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
 gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
          Length = 463

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 176/443 (39%), Positives = 250/443 (56%), Gaps = 7/443 (1%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+R++AP + F A+K    DGHDF+  A+ KGAG  +V+            
Sbjct: 20  DWAVDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQALAKGAGAALVSHIPEGVAEGS-- 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  VDDV  AL  L  A R R+KA ++A+TGSVGKT+TKEML   L+   +T+A + SY
Sbjct: 77  PLLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHAAVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + ELGM+H GEI  L+   RPH+A++TT+A  HL  F  +
Sbjct: 137 NNHWGVPLTLARMPADTEFAVIELGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDV 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA  KA I EGLE  G   LN D     +L+A + A GI+T + FG+S +A ++L+  
Sbjct: 197 AGIAREKAAIIEGLEPGGVAVLNADLDETPVLRAVAEAAGIETRW-FGQSADA-YRLKDA 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +   + +   + L G+ +      +G H A N    L  V  L  D+D A+  L+ + P 
Sbjct: 255 ELDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLALGGDLDLALAGLAGWSPV 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GRG R+   L  G  T++D++YNANP SM AA++VL+       GRRIA L DM E+G 
Sbjct: 315 KGRGARFTVDLPSGSVTVLDDAYNANPTSMAAALTVLAATPA--TGRRIAYLADMKELGP 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H  LA   +L  I  +   G  +  L DALP +    + ET       + + +  
Sbjct: 373 QEAALHAALAAHPALDRIDQIHCIGPLMKHLFDALPATKRGIWVETSAEAATALPTHISG 432

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD V+ K S S    R+++ + E
Sbjct: 433 GDAVLAKGSLSMAVARVVDAIRE 455


>gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
 gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
          Length = 455

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 208/467 (44%), Gaps = 21/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++   +    I       V   + DSR + P   F  +   + DGH ++  A   GA
Sbjct: 4   TLREMATILNA-PIQNEADVAVTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +   D         +PV  V D L A  +LA     +    ++A++GS GKTTTK+ 
Sbjct: 62  TVALWQADHQNVPS--HLPVIIVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKDF 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +     +  KT     ++NN IGVP T+  MP D +  + E+GM H G++ FL+ LV+P 
Sbjct: 120 IAAIGQTSYKTVKTPENFNNEIGVPQTILSMPTDTELLVIEIGMDHPGDLTFLSKLVKPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGI 244
           IA++T I  AH+  F   E IA  K EI  GL++ G +  N D+    E +   +H L  
Sbjct: 180 IALLTMIGEAHIEFFKTRERIADGKMEIINGLKEHGHLVFNGDEPLLLERVGQHAHLLHD 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               SFG +   D    +      Q+  +     +         G +   N L  + +  
Sbjct: 240 ----SFGLNSTNDLFASEIDMTPVQASFKTNQSAQRFT--IPMTGRYNVTNALSAITVGH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        +AL+     E R +            ++ + YN+NP + K  +   +   
Sbjct: 294 LLHISDKKIAQALAEAPITENRTEWLDGQFGGK---ILSDVYNSNPTAAKEVLHFFADTP 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
               G+RIAVLGDM ++G+ S + H  L E L+   I+HV+L G  + +L++AL      
Sbjct: 351 TQ--GKRIAVLGDMLQLGDASPALHASLMENLNPDKIAHVYLVGEEIKSLEEALLPIYPA 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++  +  +  + L   + + L   D +++K S+      ++N L +
Sbjct: 409 GTVKRYAIDDPESLLKDLLADLTSDDTIMLKGSHGVHLENIVNQLKK 455


>gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 205/474 (43%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENEVK 457


>gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
 gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
          Length = 459

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 121/463 (26%), Positives = 201/463 (43%), Gaps = 17/463 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T    L  +    +          +  D+RS+   + F A+KG  +D HDF+  A  +
Sbjct: 1   MMTLQQALGWLPSARLVGDGSVKPLRVHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + +      + +  +P   V D   AL +LA   R +    +IA+TGS GKTT  
Sbjct: 61  GAVAAIAH----HGLAAAGLPGLEVADSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVT 116

Query: 124 EMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +M+   L + K T  +A  G+ NN IGVPLTL R+      G+ ELGM+H GEI +L  L
Sbjct: 117 QMIAAILRAWKSTQAFATEGNLNNDIGVPLTLLRLRASHAVGVVELGMNHPGEIAYLAAL 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P +A++      HL   + +E +A     + + L   G      DD +  + +  +  
Sbjct: 177 AKPGVALVNNAQREHLEFMATVEAVARENGSVLQALGTDGIAVFPADDDYTAIWRGLA-- 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + + +F ++  AD   +  +   +   +  +     ++   H  G H  +N L    
Sbjct: 235 -GARRVLTFAQTGPADVTAQA-QWSGDCWQVAARTPAGPLDFPLHIAGRHNVKNALAATA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   +      LS F P +GR +     L     TLID++YNANP SM+AAI VL+
Sbjct: 293 CALAAGVPLPVIAAGLSEFAPVKGRSRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLA 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++       R+ V+GDM E+G+    FH +         I  ++  G        A    
Sbjct: 353 ELPAP----RLLVMGDMGEVGDQGPQFHEEAGRYAHARGIEQLFTLGAQSQRASTAFGAG 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +   M  L   + + L     V+VK S      +++ ++
Sbjct: 409 ---RHFSQMADLAAAVVAELPQAGSVLVKGSRFMKMEQVVQVI 448


>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
 gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
          Length = 452

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 204/460 (44%), Gaps = 31/460 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  ++ Q         +    +N I+ D+R+I   + F A+KG  +DGH F   A+ KGA
Sbjct: 13  SLKEISQ--------PLSNKLINEINTDTRNITENDIFLALKGDKFDGHLFAEKAIDKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +++N  +  +     IP   V D L A  ++A   R + K  II ITGSVGKTTTKE+
Sbjct: 65  IALILNHKISVNSTK-KIPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSVGKTTTKEL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K +    +YNN IGVP TL  +    D+ + E+ M   GEI  L+ +  P 
Sbjct: 124 ISAVLGVYGKVHKTQANYNNEIGVPKTLLAITTSDDYAVIEMAMRARGEIALLSQIACPT 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT +  AH+      E IA AK E+   +       LN+DD   + L   +  +   
Sbjct: 184 IGIITNVGTAHIGRLGSREAIAEAKCELLAEMPTDSIAILNHDD---QRLMETAAKVWQG 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  +  D   +  +           L+ K M+      G H A N L  L +   
Sbjct: 241 KTITYGL-EGGDITGKVLENQI--------LRVKGMDFPLPLPGRHNALNYLAALAVTQQ 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D    I+ +           R +    +    L+DE+YNA   SMKAA+ +L     
Sbjct: 292 LNLDWHPLIQGV----TVNLPQGRSQQYSLENDIILLDETYNAGLESMKAALQLLKDTP- 346

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIH 423
               R +AVLG M E+G+ S   H ++ E      I  +++        A+   + +++ 
Sbjct: 347 --GKRHLAVLGTMKELGDASAQLHQEVGETAETLGIDGLYILVDDPEAQAIAQGV-KTVE 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                T + L   +   +  GD ++ K+SNS G  R++  
Sbjct: 404 TECFPTHEQLIQRLTEIIKPGDRILFKASNSVGLNRVVEA 443


>gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
 gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 458

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 210/464 (45%), Gaps = 26/464 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA 
Sbjct: 7   LSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V  +    +    +P   V D   AL +L    R +    + A+TGS GKTT KEML
Sbjct: 65  AALVERE----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEML 120

Query: 127 TIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L +         A  G+ NN +GVPLTL ++       + ELG S +GEI +   L 
Sbjct: 121 ASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELT 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA++   
Sbjct: 181 RPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASG- 239

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + +F      ADF+    ++ +       +Q      +V  + +G H   N L   
Sbjct: 240 --RPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +D  +  L    P +G   R    L      +ID+SYNANPASM AAI +L
Sbjct: 298 AAAHALGVPLDGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDIL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   
Sbjct: 355 SGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAAG-KVSALYAVGPLMAHAVQAFGA 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      L   + +       +++K S S    +++  L
Sbjct: 410 TGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
 gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 208/455 (45%), Gaps = 22/455 (4%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G         ++ DSR I P + F A++G  +DGHDF+  A+  GA   +V+ D     
Sbjct: 21  VGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPS 80

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              +  +  VD+ L A  ++A   R R    +I ITGSVGKTTTKE++   L+       
Sbjct: 81  DLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              +YNN IGVP T+ ++  D  +  + E+GM   G+I  L  + +P+IAVIT +  AH+
Sbjct: 141 TEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHI 200

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 + IA AK E+   L  TG   LN D+     L A +  L +    ++G  +N D
Sbjct: 201 GLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIATAQRLNLPRCRTYGL-QNGD 256

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            Q +            + ++G+         G H A N L  L I   L  D +      
Sbjct: 257 LQGQLIDLE------TLVVEGQRF--RLPLPGAHNALNFLAGLAIAQELGLDWE--AFRD 306

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 +GR +R   +       L+DE+YNA   SM AA+ +L+        RRIAVLG 
Sbjct: 307 LSVTLPQGRARRIELSP---DIVLLDETYNAGLESMLAALQLLADTPGQ---RRIAVLGT 360

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+G+ S+++H  + E  +   +  + +       A   A   +I        + L   
Sbjct: 361 MKELGDFSETYHRQVGEKAAALGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSE 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           ++ S+  GD ++ K+S S    R++   +  + A+
Sbjct: 421 LRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455


>gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 457

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
 gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
          Length = 452

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 213/473 (45%), Gaps = 27/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     +  A+    +G      +  +S D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MITMM-LSQIADALDAELVGN--DRAIESVSTDTRAIDAGALFVALVGERFDAHDFAAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GAG ++V+      I    +P   V D   AL +L        +   +AITGS GKT
Sbjct: 58  VESGAGALLVSR-----IVESDVPQLLVKDTKLALGQLGALVHQSCQTPTVAITGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   +    +     G++NN IGVPLTL R   + D+ + E+G +H+GEI + T+
Sbjct: 113 TVKEMVASIMEQKGRVLFTAGNFNNDIGVPLTLLRSTPEDDYAVIEMGANHIGEIAYTTN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+  +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  E   +   
Sbjct: 173 LVKADVALVNNVAAAHLEGFGSLDGVKQAKGEIYQGLKPGSVAIINLDSNGGEYWHS--- 229

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  K +  F     +ADF  +     S   +   +      + +    +G H   N L 
Sbjct: 230 VLADKLVKRFSVMDSDADFFAKDISLNSSGEAEFTLVSPVGDVAIKLGIVGQHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L A+++     L+     +G   R           LID+SYNA+  +MKAA  
Sbjct: 290 ATALALELGANLEMVQSGLAQLSKVKG---RVEVIELNDTIKLIDDSYNASVPAMKAAAD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  +    G R  +LG+M E+G+ S + H  + E  + +   HV   G    A+ D  
Sbjct: 347 LLASFT----GIRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTYGADAKAISD-- 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLEEF 468
                  +  +   +  +I+  L    +   ++VK +NS G  ++   + E +
Sbjct: 401 --ECGGIHFSSHQSMIDYIKQHLAQHQEQQTLLVKGANSAGMSKVATAVKEMY 451


>gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
 gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
          Length = 492

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 142/488 (29%), Positives = 223/488 (45%), Gaps = 32/488 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T  +L +A+ G  + +  P G     ++ DSR +     F A  G   DGH F+ 
Sbjct: 1   MIPI-TAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAIT 114
            A   GA L +   +++   G+   P   V DV+ A+  LA       R     T++A+T
Sbjct: 60  QAAAAGAVLNLTEREVLDDTGAPY-PSVVVADVVQAMGALASHVLQRLRAAHPVTVVAVT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L    ++   T A   SYN  +GVPLT+     D +F + E+G +H+G 
Sbjct: 119 GSVGKTTTKDLLHGIFAAEGPTVAPRNSYNGEVGVPLTVFTAEQDTEFFVVEMGATHIGN 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           IR+L  +VRP +  +  +  AH   F G+E IA AK E+ E L   GT  LN DD+    
Sbjct: 179 IRYLCEMVRPDVGAVLCVGSAHAGEFGGVENIARAKGEMVECLAPEGTAVLNDDDARVRP 238

Query: 235 LKAKSHALGIKTIYSFGK--------SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH 285
           ++ ++ A     + SFG+         ++           ++      +     S   VH
Sbjct: 239 MRERTTA----RVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSFTLHFPDGSAFPVH 294

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N+L    +        +     L     +     R          T++++
Sbjct: 295 SRLIGVHHVTNLLAAASVAWAAGVAPERIAAGLEGTGARSRW--RMERTERSDGVTVVND 352

Query: 345 SYNANPASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +YNANP SMKAA+  L+Q+    + H   R IAV+G M E+G+ + S H DL ++L   N
Sbjct: 353 AYNANPQSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAHADLGQLLVRLN 412

Query: 401 ISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           ISHV   G     +  A            +    +     +++ L  GD+V++KSSN+ G
Sbjct: 413 ISHVVAVGDLARPVYTAATLEGSWGEEALWVPDAEAAEEHLRAVLRPGDIVLLKSSNAAG 472

Query: 457 FYRLINLL 464
              L + +
Sbjct: 473 LNHLGDRI 480


>gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 464

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 207/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNIS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD+      L      +GR               ID++YNAN  SMK
Sbjct: 293 NALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     +
Sbjct: 350 SAVSVLKNYPAF----RIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 457

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 208/474 (43%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+     + I     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVATLSEKEIANH------PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP + +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D      L A       
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGMAPGSLLLAPADPIVEAYLPA------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457


>gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 217/468 (46%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +       V  G++ DSR + P   F  + G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHEFIPAAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +    +  +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAEDHL--PMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+    LL +++  +
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +   V+ Q   +      +G +   N L  L +
Sbjct: 237 -TQSQETFGLHPENTLFAHSISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRRFHVKPEAMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                 GR IAVLGDM E+G+ S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 352 FQTA--GRHIAVLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409

Query: 422 --IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               VHY   +    +   +Q+ +   D+V++K+S+      ++  L+
Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALV 457


>gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas aeruginosa PAb1]
          Length = 458

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 210/464 (45%), Gaps = 26/464 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA 
Sbjct: 7   LSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V  +    +    +P   V D   AL +L    R +    + A+TGS GKTT KEML
Sbjct: 65  AALVERE----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEML 120

Query: 127 TIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L +         A  G+ NN +GVPLTL ++       + ELG S +GEI +   L 
Sbjct: 121 ASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELT 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA++   
Sbjct: 181 RPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASG- 239

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + +F      ADF+    ++ +       +Q      +V  + +G H   N L   
Sbjct: 240 --RPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +D  +  L    P +G   R    L      +ID+SYNANPASM AAI +L
Sbjct: 298 AAAHALGVPLDGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDIL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   
Sbjct: 355 SGFS----GRTVLVLGDMGELGSWAEEAHREVGAYAAG-KVSALYAVGPLMAHAVQAFGA 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      L   + +       +++K S S    +++  L
Sbjct: 410 TGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AVVTLSEKEVANH------PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADSIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG    A+ ++    +       +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--PGAELEITDLVERKNSLTFKANFLEQALD--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVDTVIFYGEDIAELSQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVFYFKKTADEDQFEDLVKKVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 210/464 (45%), Gaps = 26/464 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA 
Sbjct: 7   LSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V  +    +    +P   V D   AL +L    R +    + A+TGS GKTT KEML
Sbjct: 65  AALVERE----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEML 120

Query: 127 TIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L +         A  G+ NN +GVPLTL ++       + ELG S +GEI +   L 
Sbjct: 121 ASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELT 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA++   
Sbjct: 181 RPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASG- 239

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + +F      ADF+    ++ +       +Q      +V  + +G H   N L   
Sbjct: 240 --RPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +D  +  L    P +G   R    L      +ID+SYNANPASM AAI +L
Sbjct: 298 AAAHALGVPLDGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDIL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   
Sbjct: 355 SGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAAG-KVSALYAVGPLMAHAVQAFGA 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      L   + +       +++K S S    +++  L
Sbjct: 410 TGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 217/469 (46%), Gaps = 18/469 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P ++  +L  A  G  +G  P   + G+S D+R+I P   F A++G  +DGH ++  A  
Sbjct: 4   PRFSPDELAAATGGRWMGAPP-AELAGVSTDTRTIVPGALFVALRGERFDGHAYLGEASA 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                         +     +PV  V D L AL  +A   R R    ++ +TGS GKTTT
Sbjct: 63  ---KGAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +EM+   L++        G+ NN +GVPLTL  +  +    + E+GM+H GEI  L  + 
Sbjct: 120 REMIAGILATRGPVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIARLAAIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P++ V+T  A AHL     ++ +A AKAE+++GL+ TG +  N DD     +  ++ A 
Sbjct: 180 EPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDP---RMLKRAQAA 236

Query: 243 GIKTIYSF--GKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLM 298
           G K + +F  G  +  D  + +   Q  +     + +  + + V   G +G H A N   
Sbjct: 237 G-KRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGLVGAHNAVNAAA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L        + L+   P    G+R R         L+D+ YNANPASM AA+ 
Sbjct: 296 AAAAAISLGCSDREIAQGLAAVRPV---GRRLRLERLASGLRLVDDCYNANPASMSAALR 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDA 417
            L  ++   + R +AVLGDM E+G   +  H +L    +   +  +   G       + A
Sbjct: 353 TLVDLA-RPDARAVAVLGDMLELGAFEEPAHRELGGEAARAGVRLLAAFGPRSRATAEAA 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLLL 465
               +   +++ MD L  + +++L    DV++VK S      RL+  L 
Sbjct: 412 RAAGLETFHTDDMDALVRWARTALAPPSDVLLVKGSRGMKLERLVEALR 460


>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 451

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 209/461 (45%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++ +   G   G      V  + +DSR +AP   F A+ G   DGHDFI  A ++G
Sbjct: 4   FTLQEVAEWTGGTRHGDA--VTVGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  D     G   +PV  V D   AL  L  A R R  A ++ +TGS GKTT KE
Sbjct: 62  AAAALVERD-----GDWPLPVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+    T A  G+ NN +GVPLTL R+  +  + + E+G +  GEI  LT +  P
Sbjct: 117 MIAAILARRGATLATRGNLNNELGVPLTLLRLDREHRYAVIEMGANAPGEIARLTAIAAP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT   PAHL  F  +  +A AK E+F GL   G   +N DD       A    +G 
Sbjct: 177 EVAVITNAGPAHLEGFGDLAGVARAKGELFLGLPDAGVAVVNADDPQAPTWYA---LVGD 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG+  +AD +       +     E+Q+ G    V     G H   N L    +  
Sbjct: 234 RRCLRFGRGADADVRAT---AETAGGHFELQIPGGRHPVRLPLPGRHNVMNALAAAAVAV 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +   +  L       G   R +    +    ++D++YNANPAS++AA+ VL+   
Sbjct: 291 ALEVPLGDIVAGLEACSGVAG---RLQWRTGREDCRILDDTYNANPASLQAALDVLAA-- 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGDM E+G  +++ H +  E      +  ++  G    A   A       
Sbjct: 346 --EHGERWLVLGDMGELGAGAEALHAEAGEAARRAGVHRLFAVGTLAAAAARAFGEGGR- 402

Query: 425 HYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
            + +  D L      + + G+V V+VK S   G  R++  L
Sbjct: 403 -HFDDRDSLLAA-LLAELSGEVRVLVKGSRFMGMDRIVAGL 441


>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
 gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
          Length = 457

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 203/471 (43%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W  + L     G    +      +G+S D+RSI   + F A+ GP++DGHD++  A
Sbjct: 1   MIGQWYLNQLKDQFGGL---VTQDVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   VV+     S  +  +    VDD   AL  +A A R R +  + A+TGS GKT
Sbjct: 58  FSKGAVAAVVSRSDSVSRKAAWV----VDDTRIALADIAKANRQRFEGPVYAVTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   LS   +  A  G+ NN IGVPLTL  +    +  + E G S  GEI + T 
Sbjct: 114 TVKEMLHAILSQNAEVLATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTD 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKS 239
           +  P +A++     AHL  F  ++ +  +KAEIF  L +  G   +N DD   +   + +
Sbjct: 174 ISCPDVAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHT 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             L   T  + G    AD             +   +    + ++V    +G H   N L 
Sbjct: 234 EGLPRLTFSARG-DLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMGQHNVANALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               VS     +      L  F    GR +  + A       +ID+SYNANP S+ AA+ 
Sbjct: 293 AASAVSAQGMSLKDIASGLGSFSAVSGRMRPLKSAR---GALVIDDSYNANPGSVNAAMD 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVLALK 415
           +L  +     G  + VLGDM E+G  +   H  +    +       W  G    H +A  
Sbjct: 350 LLVSLP----GESVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAY 405

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           DA        + ++ + L   +      G  +++K S S    R++  L E
Sbjct: 406 DAAA-GKQGQHFKSHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTE 455


>gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 217/468 (46%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +       V  G++ DSR + P   F  + G   DGH+FI  A   
Sbjct: 4   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHEFIPAAAAA 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +    +  +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 63  GAVATFVAEDHL--PMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 121 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+    LL +++  +
Sbjct: 181 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +   V+ Q   +      +G +   N L  L +
Sbjct: 238 -TQSQETFGLHPENTLFAHSISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 296 GRRFHVKPEAMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                 GR IAVLGDM E+G+ S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 353 FQTA--GRHIAVLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 410

Query: 422 --IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               VHY   +    +   +Q+ +   D+V++K+S+      ++  L+
Sbjct: 411 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALV 458


>gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +         + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPAAPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+  +    +  +    +V    ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELGITDLVERKDSLTFKVNFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9]
 gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9]
          Length = 452

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 209/464 (45%), Gaps = 23/464 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T H++ +A+     G         +  DSR+I   + F A+KG  +D HDF+   + +
Sbjct: 1   MLTLHEVAEALFAVRQGD--NTGFTRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLAR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV  D          P+  V D   AL +LA   R R    +  ITGS GKTT K
Sbjct: 59  GAAGAVVRCDFDLPGA----PLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVK 114

Query: 124 EMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EML   L+         A  G++NN IG+PLTL  +       + E+GM+H GE+ +L+ 
Sbjct: 115 EMLRGMLAQWLGDEAVLATGGNFNNDIGMPLTLLGLRDTHRAAVIEMGMNHAGELTYLSG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++     AH+ +F  +E IA AKAEIF GL   G   +N DD   +L  A + 
Sbjct: 175 LARPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAGLAADGVAVINRDDPNRDLFVAAAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + I  FG +   D      +  ++ S + +        V+    G HM  N L   
Sbjct: 235 G---RRIVEFGLAAG-DVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAAC 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + S +   +   +  L  F    GR    R        T+ID++YNANP S++AAI+VL
Sbjct: 291 AVASAMGVPLPAMVAGLQAFAGVPGRLAFRRAVS---GLTVIDDTYNANPDSVRAAIAVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GRR  V GD+ E+GE + + H ++ +      +  +   G        A   
Sbjct: 348 AARS----GRRWLVFGDLGELGEGAPALHAEIGQAAKAAGLDGLVTLGTVSREAAAAFGP 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  ++++ +   +   L   D V+VK S      R++  L
Sbjct: 404 GALA--CDSVEAVLEALAP-LGAADSVLVKGSRFMKMERVVAAL 444


>gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 163/464 (35%), Positives = 250/464 (53%), Gaps = 8/464 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT   L  A  G   G  P   V G+SID+R++AP + F A+ G + DGH  +  A
Sbjct: 1   MTVLWTRAALQDATGGTFTGQAP-VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +++   V    S    +  V D + ALN L   AR R    ++A+TGSVGKT
Sbjct: 60  LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML +AL +I  T+    SYNNH GVPLTLAR+P+D  F + E+GM+H GEI  L  
Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP +A++TTIA AHL +   +E IA  K+++   L   G   +  DD+  + + A+  
Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAGIAIVP-DDATGQPIFAEQA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T++  G+  ++   +      +E S   V + G+S+ V  +  G H+ +N    L
Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L AD+ TA  AL+ F P  GRG      +  G   L+DESYNA+  S++++++VL
Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGAL--KPILGGRAALLDESYNASVLSVRSSLAVL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +      RR+AVLGD+ E+G  +++ H  L     L +   V+ SG  +  L D LP 
Sbjct: 357 GLLPAT---RRMAVLGDIRELGAFARAEHESLL-SAVLAHADLVFCSGPDMKYLFDLLPP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S    ++     L   ++ ++   DV++VK S       ++++L
Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVSVL 456


>gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
          Length = 471

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 207/478 (43%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFAGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V  GA  V+           + +P   VDDV  AL  LA     R  AT++A+TGS G
Sbjct: 60  AVVGAGAVAVLGTRP-------VGVPAIVVDDVQTALGALARHVVRRLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELL 235
             L  P I ++  +  AH+  F G E+IA AK E+ E L    + GT  LN DD +   +
Sbjct: 173 AGLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPSEAEGGTAILNADDPYVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG+S  AD      +          +     + +V     G H   
Sbjct: 233 ASRTKA----KVILFGESGEADVSAENVRLTDTGQPAFRLHTPSGASDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L    D    ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGMSADEIAVALSEAGSLSRW--RMEVTERPDGVTVVNDAYNANPESMR 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
           AA+   +  +     R  AVLG M E+G+ + + H  +  +    N+S +   G      
Sbjct: 347 AALR--ALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREAAW 404

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 405 LQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEGVAQALLE 461


>gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
          Length = 457

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 203/474 (42%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              ++T +  AHL+ F    EIA  K +I +G+          D    + L         
Sbjct: 177 KTVIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLFLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAVNGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457


>gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
 gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
          Length = 471

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 133/478 (27%), Positives = 202/478 (42%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V G +  DSR + P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIADVVGGQTHDIPDPSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V +   + +P   V DV  AL  LA     +   T++A+TGS G
Sbjct: 60  -------AVVEAGAAAVLASRPVGVPAIVVPDVQAALGALARHVVRKLGTTLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLVAQVLRRKAPTVFTPGSLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELL 235
           T L  P I ++  +  AH+  F G E+IA AK E+ E L    + G   LN DD     +
Sbjct: 173 TGLTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPSAEEGGAAILNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG+S  AD +               +     + +V     G H   
Sbjct: 233 ASRTKA----RVILFGESGEADVRAENVTLTDAGQPAFRLHTPSGASDVTMRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   V     ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGMSVSEIATALSEAGSLSRW--RMEVTERPDGVTVVNDAYNANPESMR 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408
           AA+   +  +     R  AVLG M E+G+ + + H  +  +    N+  +   G      
Sbjct: 347 AALR--ALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASW 404

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  +       VH S+        ++S L  GDVV+VK+S S G   +   LL+
Sbjct: 405 LQLGAYNEGSWGEESVHVSD-AQAAIDLLRSQLRPGDVVLVKASRSVGLESVAQALLD 461


>gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 163/464 (35%), Positives = 249/464 (53%), Gaps = 8/464 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT   L  A  G   G  P   V G+SID+R++AP + F A+ G + DGH  +  A
Sbjct: 1   MTVLWTRAALQDATGGTFTGQAP-VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +++   V    S    +  V D + ALN L   AR R    ++A+TGSVGKT
Sbjct: 60  LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML +AL +I  T+    SYNNH GVPLTLAR+P+D  F + E+GM+H GEI  L  
Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP +A++TTIA AHL +   +E IA  K+++   L   G   +  DD+  + + A+  
Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAGIAIVP-DDATGQPIFAEQA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T++  G+  ++   +      +E S   V + G+S+ V  +  G H+ +N    L
Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L AD+ TA  AL+ F P  GRG      +  G   L+DESYNA+  S++++++VL
Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGAL--KPILGGRAALLDESYNASVLSVRSSLAVL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +      RR+AVLGD+ E+G  +++ H  L     L +   V+ SG  +  L D LP 
Sbjct: 357 GLLPAT---RRMAVLGDIRELGAFARAEHESLL-SAVLAHADLVFCSGPDMKYLFDLLPP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S    ++     L   ++ ++   DV++VK S       ++ +L
Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVAVL 456


>gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 464

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 207/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMAAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNIS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD+      L      +GR               ID++YNAN  SMK
Sbjct: 293 NALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     +
Sbjct: 350 SAVSVLKNYPAF----RIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 457

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 210/468 (44%), Gaps = 30/468 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +             DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLAAKNDVSQFENVTFRNAEFDSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +         P   VDDVL A   LA     ++   ++A+TGS GKTTTK+M
Sbjct: 64  TATLSERPVAEG------PYVLVDDVLAAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +G++K G + +  D    + L  +      +
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAKGKMQIADGMKKGGLLLVPADKIVNDFLPDQ------Q 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     ++++      G + A N ++   +   
Sbjct: 232 KVVRFG--PDADICLTRLEERKDSLTFEANFLEQAID--LPVTGKYNATNAMIASYVALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A +       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSESAIRQAFAQLELTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFSAIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSI 422
              GR+ AVL DM E+G  S+  H  +   L+   I+ ++L G  + AL      +    
Sbjct: 345 SQGGRKAAVLADMKELGADSKLMHGAMITSLNPEVITDLFLYGEDMEALYVYAREIYPPN 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            VHY       +  + L   +++ L   D +++K SNS    +L+ +L
Sbjct: 405 RVHYFVKNADKDQFEDLTKTVKTWLQSSDQILLKGSNSMKLDKLVEVL 452


>gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
 gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
          Length = 451

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 209/467 (44%), Gaps = 29/467 (6%)

Query: 4   LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    +L Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV
Sbjct: 1   MMTLRLAELAQVLDARLIGD--DGEITVVSTDTRTLGAGALFVALRGERFDAHDFCEQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           Q GA  ++V  ++      L+IP   V D L  L +L    R R    ++AITGS GKTT
Sbjct: 59  QAGASALLVERELP-----LAIPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM T  L +  +  A  G++NN +GVPLTL R+     F + ELG +H GEI + T L
Sbjct: 114 VKEMATAILRNEGEVLATAGNFNNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A+I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D+ F+   + +   
Sbjct: 174 AKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGLSEGGTAIVNADNEFWPKWRER--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            GI+  +S  + ++  F  R         +   +      + +     G H   N L   
Sbjct: 231 -GIQCAFSI-EGQSQPFHARNLVLNERGCAEFVMVTPQGELSLTLAIPGRHNVANALAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L A + +    L    P +GR    R     G  TL+D++YNA+  S+ A I  L
Sbjct: 289 AGCLALGASLGSVKAGLEQMAPVKGRFCVQRW----GGLTLVDDTYNASVESVLAGIDAL 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G ++ V GDM E+GE S   H  +        +  V   G       DA   
Sbjct: 345 TAM----GGFKVLVFGDMRELGEESAEQHARVGRHARERGLDAVLTVGEESRHTADAAA- 399

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLL 465
                + +    LF  +   +       ++VK +       ++ ++ 
Sbjct: 400 ---GRHFDNKASLFEVLAQMINTHQEISILVKGARGSRMEDIVEMVK 443


>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
 gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
          Length = 974

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 215/468 (45%), Gaps = 24/468 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + + G   G        G+S D+R++   + FFA+ G  +D HDF+  A   GA
Sbjct: 520 TLASLAERLGGELRG--EDLPFAGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGA 577

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV+  +      + +P   V+D   AL   A   R R    ++A+TGS GKT+ KEM
Sbjct: 578 CGAVVSRWV-----DVDLPQIKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEM 632

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    S   +  A  G+ NN IGVPLTL R+     F + ELG +H+GEI +   LVRP 
Sbjct: 633 LAAIFSEEGRVLATSGNLNNDIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGLVRPD 692

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT +  AHL  F     IA AK+EI+ GL   G   +N DD + +     + +   +
Sbjct: 693 AALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNAS---R 749

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +F  ++  A+   + W         +EV + G+ +++  + IG H   N L      
Sbjct: 750 NVLTFSIENTRANCFAKSWSLDPVGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAAA 809

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A + +    L+   P +GR          G +  ID++YNANP+SM+AAI  L+++
Sbjct: 810 RAAGASLTSIRDGLNKLQPFKGRMFPKSL----GRWHWIDDTYNANPSSMRAAIDALARL 865

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
                  ++ +LG M E+GE S   H D+    +   I  +++S                
Sbjct: 866 DEP----KVLILGRMGELGEQSAKLHADIGAYAARAGIRRLFISRDDAGDYARGYRSVTN 921

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +   +  + +   +  S+ +G VV+VK S S    ++ +   +  
Sbjct: 922 DGQLFVGDGPEAIAKQLIESMPEG-VVLVKGSRSAAMEKVFDEAQKRL 968



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 163/459 (35%), Gaps = 41/459 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+  DSR +   + F A+KG H DG D+I  A+++GA  V+ +   V++   ++ 
Sbjct: 22  DVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLADRVGVSAEQVVNA 81

Query: 84  P--VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              V   DD+   L  +A         +  +IA+TG+ GKTT   +L   L  + ++   
Sbjct: 82  HGNVIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTVSHLLVRLLMRLGESAKT 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPH 185
           IG+        L            + E              +  S  G  +     V   
Sbjct: 142 IGTLGYGHPDHLIPLANTTPDAIQLHEILAACREDGARFVAMEASSHGLDQGRLGCVEIS 201

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            AV T I   HL     ++    AKA++  + GL     + LN DD+    + A +   G
Sbjct: 202 TAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLRN---LVLNADDAGVAKMAAVAE-HG 257

Query: 244 IKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +K ++ S     N D  L +         ++++++ +        +G     N+L  L  
Sbjct: 258 VKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFNVANILAVLAA 317

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +          + AL    P +GR              ++ + Y   P +++ A++ L  
Sbjct: 318 LVSEGFSASLVVDALKEIAPVKGRMDCLPHTSGAQLPAVVID-YAHTPDALQQALNALRH 376

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------GFHVLAL 414
                 G+   V G     G+  +     + ++ +      V  S           +  +
Sbjct: 377 --HCTTGKLWCVFGC---GGDRDKGKRPLMGKIAASSADRVVVTSDNPRSEVPDVIIAEI 431

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +  V                    DV+++  K 
Sbjct: 432 RGGMEATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKG 470


>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
 gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
          Length = 463

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 214/469 (45%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+   + +   +     G   Q  V  I+ D+R+I   E F AIKGP++DGH F+  A
Sbjct: 1   MIPM-DLNWIASVLAVSFEGQNQQ--VLNINTDTRTIKAGEVFLAIKGPNFDGHKFVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+V+  +      + +P F V D   AL KL  A         IAITGSVGKT
Sbjct: 58  VAQGAVAVIVDHSV-----KVQVPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    LS   +  A  G++NN IGVPLTL R+     + + ELG +H+GEI + T 
Sbjct: 113 TVKEMCAAILSQHGEVLATKGNFNNDIGVPLTLLRLEPKHQYAVIELGANHIGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +AV+  +A AH+  F  ++ +A AK EIF GL+  G   +N D  + +       
Sbjct: 173 LVKPDVAVVCNVAAAHIEGFGSLDGVAQAKGEIFSGLKAGGIAVINADSPYVDYWLT--- 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +L   T+  F  S+  D             +  ++    + + V     G H   N L+ 
Sbjct: 230 SLDKSTLCQFSMSQQLDVWPENIHLDKLGRAGFDLCTPTERIAVQLPIAGKHNITNALIA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L   +    + L+     +G   R          T+ID++YNAN  S+KA I +
Sbjct: 290 CALTLPLGVTLAHVAQGLASMPMVQG---RVNLIEVNDSLTVIDDTYNANVQSVKAGIDL 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L QI    EG +I   GDM E+G  ++ +H ++        I   +  G       D   
Sbjct: 347 LGQI----EGHQIFAFGDMGELGADARQYHEEVGLYAQQKGIDTFYSLGVLSRYASDVYQ 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLL 465
           ++    +  +   L   I + +   +    ++VK S S     L+  ++
Sbjct: 403 KA--GLHFSSRQQLLAAILNDIAHVEGPITILVKGSRSSRMELLVQDIV 449


>gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
 gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
          Length = 456

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 207/464 (44%), Gaps = 24/464 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   ++   +    IG       + +  DSR+IA  + F A+ GP +DGHD++     KG
Sbjct: 5   WLLSEVAANLNARVIGA--DVAFSAVGTDSRTIAADQLFVALNGPRFDGHDYLAEVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  +    + +  +P   V D   AL +L    R   K ++ A+TGS GKT+ KE
Sbjct: 63  AVAALVERE----VANAPLPQLLVADTRVALGQLGALNRQAFKGSLAAVTGSSGKTSVKE 118

Query: 125 MLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ML   L +       A  G+ NN +G PLTL  +  +   G+ ELG +H+GEI +   L 
Sbjct: 119 MLASILRAGLNGAVLATRGNLNNDLGAPLTLLELVPEHRAGVIELGANHVGEIAYTVSLT 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A+IT    AH+  F G E+I  AK EI EGL   G   LN DD  F   + ++   
Sbjct: 179 QPQVAIITNAGNAHVGEFGGPEKIVEAKGEILEGLPSDGVAVLNLDDKAFVTWQRRAAG- 237

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + SF  +   ADF      +         ++    S  +  + +G H   N L   
Sbjct: 238 --RKVLSFALRDTRADFHGSDLARDERGCQGFTLRSPIGSARIQLNLLGEHNVANALAAC 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +   ++ L    P +G   R    L      +ID+SYNANP SM AA+ +L
Sbjct: 296 AAAHALGMPLVAMVQGLESLQPVKG---RAVAQLAPNGVRVIDDSYNANPVSMCAAVDIL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGDM E+GE ++  H D+    +   +  ++  G  +    +    
Sbjct: 353 AGFS----GRTVLVLGDMGELGEWAEQGHRDVGRHAAG-KVDALYAVGPLMRFAVEEF-- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +      L   +++    G  +++K S S    +++  L
Sbjct: 406 GSKGRHFVDQAELIEALRAE-QAGSTLLIKGSRSAAMDKVVAAL 448


>gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
 gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
          Length = 474

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 204/482 (42%), Gaps = 30/482 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++     G    I  P   ++G + IDSR +     F A  G H DGH +  
Sbjct: 1   MIAL-SLAEIADITGGRPHDIPDPSVRISGPVVIDSRKVEAGSLFAAFAGEHVDGHAYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   V DV  AL  LA A   R    ++A+TGS G
Sbjct: 60  -------RAVAAGAAAVLAARPVGVPAIVVPDVEKALGALARAVVERLGTDVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L S   T    GS NN IG+PLT  +   +    + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQVLQSHAPTVWTPGSLNNEIGLPLTALQATAETRHLVLEMGARGIGHIAYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
           T L  P I ++  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 173 TGLTPPRIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPAEADGGVAVLNADDLLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
            A++ A        FG++++AD +  + +          +       +V     G H   
Sbjct: 233 SARTKA----RTVLFGEAEDADVRATEVRMTPGGRPAFTLHTPTGCSDVTLRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +  +L         ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHVLGMSAMEIATALSGAGTLSRW--RMEVTERADGVTIVNDAYNANPESMR 346

Query: 355 AAISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           AA+  L  +   +    GR  AVLG M E+G+ S + H  +  +    N+S +   G   
Sbjct: 347 AALRALVAMGGAARATGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGRE 406

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + A  +       V  S+        ++S L  GDVV+VK+S S G  R+   LL
Sbjct: 407 ASWLQLGAYNEGSWGEESVLVSD-AQAAVDLLRSELRPGDVVLVKASRSIGLERVALALL 465

Query: 466 EE 467
           E 
Sbjct: 466 ER 467


>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
 gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
          Length = 454

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 213/464 (45%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA          +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYRNIND---YPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEIR LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DD     +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G   ++D+++   K     S   +             +G+H   N  M++ +  +
Sbjct: 240 KTITLGIKPDSDYRMEMIKADETGSTFSIN----DHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R +          F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDIAKGLKNIELTGMRNELILL----DKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 464

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/476 (26%), Positives = 207/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQ-TFYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +++    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIKINLPYLGAHNIS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD+      L      +GR               ID++YNAN  SMK
Sbjct: 293 NALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     +
Sbjct: 350 SAVSVLKNYPAF----RIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
 gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
          Length = 456

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 206/466 (44%), Gaps = 24/466 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   ++   +    IG       + +  DSR+IAP + F A+ GP +DGHD++     KG
Sbjct: 5   WLLSEIAADLSARLIGD--DVAFSAVGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  +    + +  +P   V D   AL +L    R      + A+TGS GKT+ KE
Sbjct: 63  AVAALVERE----VANAPLPQLLVADTRLALGQLGALNRQAFTGPLAAVTGSSGKTSVKE 118

Query: 125 MLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ML   L +       A  G+ NN +G PLTL  +  +   G+ ELG +H+GEI +   L 
Sbjct: 119 MLAAILRAGLNGAVLATRGNLNNDLGAPLTLLELAPEHRAGVIELGANHVGEIAYTVSLT 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT    AH+  F G E+I  AK EI EGL + G   LN DD  F   + ++   
Sbjct: 179 RPQVTIITNAGNAHVGEFGGPEKIVQAKGEILEGLAQDGVAVLNLDDKAFSTWQRRAAG- 237

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + SF  +   ADF      +         ++    S+ +  + +G H   N L   
Sbjct: 238 --HQVLSFALRDTRADFHGSDLARDERGCQGFTLRSPVGSVRIQLNLLGEHNVANALAAC 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +    K L    P +G   R    L      +ID+SYNANP SM AA+ +L
Sbjct: 296 AAAHALGLPLVAMAKGLENLQPVKG---RAVAQLAPNGMRVIDDSYNANPVSMCAAVDIL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGDM E+GE ++  H D+    +   +  ++  G  +    +    
Sbjct: 353 AGFS----GRTVLVLGDMGELGEWAEQGHRDVGRHAAG-KVDALYAVGPLMRFAVEEF-- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +      L   +++    G  +++K S S    +++  L +
Sbjct: 406 GSKGRHFVDQAELIEALRAE-QAGSTLLIKGSRSAAMDKVVAALCD 450


>gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CMR15]
          Length = 485

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 202/477 (42%), Gaps = 25/477 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D    + G  +   P   +  ++ DSR++ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMHATDAAAWMAGAHLVG-PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVAR 66

Query: 64  GAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA  V+V+    DM        + V  V D   AL +LA   R R    ++A+TGS GKT
Sbjct: 67  GAAAVLVSRRLADMPDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKT 126

Query: 121 TTKEMLTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM++   +         A  G+ NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 127 TVKEMISAVFACAVGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEV 186

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFE 233
           L  + +P +A+I      H      +E +A+  A +   L   G      D      +  
Sbjct: 187 LAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYAP 246

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L +A   A G + +  FG    A          +    ++V             +G H A
Sbjct: 247 LWRA---AAGTRRVLDFGIEGGA--VSAAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNA 301

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L             +   +ALS F P +GR +R           +ID++YNANP S+
Sbjct: 302 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQR---KPGHHGGLVIDDTYNANPDSV 358

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AAI  L+ +       R  VLGDM E+G    +FH ++        I  V  +G   L 
Sbjct: 359 RAAIDALATLPAP----RWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELTLH 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           + +A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 415 MVEAFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 469


>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
          Length = 455

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 208/455 (45%), Gaps = 22/455 (4%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G         ++ DSR I P + F A++G  +DGHDF+  A+  GA   +V+ D     
Sbjct: 21  VGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPS 80

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              +  +  VD+ L A  ++A   R R    +I ITGSVGKTTTKE++   L+       
Sbjct: 81  DLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              +YNN IGVP T+ ++  D  +  + E+GM   G+I  L  + +P+IAVIT +  AH+
Sbjct: 141 PEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHI 200

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 + IA AK E+   L  TG   LN D+     L A +  L +    ++G  +N D
Sbjct: 201 GLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIATAQRLNLPRCRTYGL-QNGD 256

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            Q +            + ++G+         G H A N L  L I   L  D +      
Sbjct: 257 LQGQLIDLE------TLVVEGQRF--RLPLPGAHNALNFLAGLAIAQELGLDWE--AFRD 306

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 +GR +R   +       L+DE+YNA   SM AA+ +L+        RRIAVLG 
Sbjct: 307 LSVTLPQGRARRIELSP---DIVLLDETYNAGLESMLAALQLLADTPGQ---RRIAVLGT 360

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+G+ S+++H  + E  +   +  + +       A   A   +I        + L   
Sbjct: 361 MKELGDFSETYHRQVGEKAAALGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSE 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           ++ S+  GD ++ K+S S    R++   +  + A+
Sbjct: 421 LRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455


>gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
          Length = 476

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 168/476 (35%), Positives = 254/476 (53%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT H  + A QG + G        G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MTALWTAHQAVAATQGVTQG---DWVATGVSIDTRTLQPGDLFVALKDVR-DGHDFVAMA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+            P+  V DVL  L  L +AAR RS A I AITGSVGKT
Sbjct: 57  LEKGAAAALVSHRPDGVASD--APLLVVPDVLKGLEALGIAARARSTARIAAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS   K +A   SYNNH GVPLTLARMP D DF + E+GMS+ GEI  L+ 
Sbjct: 115 STKEMLRTVLSRQGKCHAAEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A++TT+A AHL++F  +  IA+ KA I +GLE  G   LN D +   +L+ ++ 
Sbjct: 175 MARPHVAMVTTVAAAHLASFESLAGIAAEKATIVDGLEPGGIAVLNGDVATTAILQDRAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G + +  FG++  A +++   +   + + +     G          G H   N +  L
Sbjct: 235 DIGAQIVL-FGETAGA-WRISDLRISRDVTVIGATSPGHDYLFKLSVPGRHFGLNAVGVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANPASMKAA 356
            +V+ L AD   A   L+++ P  GRG R    L+         L+D+++NANP S+ A+
Sbjct: 293 AVVAALGADPVAASLDLALWVPPAGRGTREIIQLDLANEFETIDLMDDAFNANPTSLAAS 352

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + V++   P        +GR+IA+LGDM E+G    + H  +A+   L  +  +  +G  
Sbjct: 353 LEVIAAGQPQDGVGRIVKGRKIAILGDMLELGTDEVAMHAAMAQNPHLQQLDLIHCAGPL 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L +ALP+     ++ T   L       +  GDVV+VK S       +++ + +
Sbjct: 413 MRHLWEALPQGKRGQWAATAAELAAQATRLVDTGDVVLVKGSKGSKVSLVVDAIRK 468


>gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis BS107]
          Length = 470

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 176/451 (39%), Positives = 251/451 (55%), Gaps = 12/451 (2%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           V    V+GISID+RSIA  + F A+K    DGHDF+  A++KGAG  +V+          
Sbjct: 18  VGDWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSRRPEGVGDD- 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             P+  VDDV  AL  L  A R R+ A +IA+TGSVGKT+TKEML   LS   +T+A + 
Sbjct: 76  -APLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVA 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           SYNNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+AP HL  F 
Sbjct: 135 SYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFD 194

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADF 258
           GIE IA+ KA I +GLE  G   LN D +   +L++ +  +    +  FG         +
Sbjct: 195 GIEGIAAEKAAIIDGLEPGGVAVLNADIAEAPILQSVAERV-THDVQWFGTGTGPIAPTY 253

Query: 259 QLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            L       +++   V L   ++  +    +G H A N L  L  ++ L  D+  A+++L
Sbjct: 254 HLTATTLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSL 313

Query: 318 SVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           S++ P  GRG R   +L   QG   L+D+SYNANP S+ AA++VL+       GRRIA L
Sbjct: 314 SLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYL 371

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G   Q  H DLA++ ++  +  +   G  + AL  ALP      +  T D +  
Sbjct: 372 GDMKELGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPAEKRGGHYATSDDVRA 431

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   +  GDVV+ K S S    ++++ + E
Sbjct: 432 DLAGQIAAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
 gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
          Length = 457

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 210/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     + I     +     DSR I  ++ F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVANH------PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLANLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+ +   +    D      L A       
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAEGSLLLAPADPIVEAYLPA------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   I  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKTNFLEQALD--LPVTGKYNATNAMIASYIAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTENQDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
 gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
          Length = 476

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 133/474 (28%), Positives = 206/474 (43%), Gaps = 22/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF---VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L +  ++  A  G   G    G    V G +  DSR   P   + A  G   DGH F
Sbjct: 1   MIAL-SLAEIAVATGGTVHGAPTSGELPVVTGAVVTDSREAEPGSLYVARIGESMDGHQF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115
           +  A  KGA   + +  +        +P   VDDV  A   ++ A   R +  T+I ITG
Sbjct: 60  VGAARDKGAVAALTSRPVDE------LPCVVVDDVQAAFVAISRAVLERATDLTVIGITG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT+TK++L   L +   T A +GSYN+ +GVPLT+ R+  D  F + E+G   +G I
Sbjct: 114 SSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVGVPLTVTRVTADTRFLVVEMGARGIGHI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT +  P I V+  +  AH+  F   E IA AKAE+ E L   G   LN DD     +
Sbjct: 174 NYLTRIAPPQIGVVLNVGTAHVGEFGSREAIARAKAELVEALPSDGVAVLNADDPVVRAM 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
             ++ A     +   G++  A  +       S+  +   V        +    +G H   
Sbjct: 234 ADRTSA----RVVLVGEAAEAAVRAEDVTVGSDGRATFRVTTPAGGATIALRLVGRHHVG 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +       +DTA  +++          R          T+++++YNANP SM+
Sbjct: 290 NALAVLAVALECGIPLDTATTSIAEAGIVSRW--RMEVTERPDGVTVVNDAYNANPDSMR 347

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+S L  +      R  AVLG M E+G+ S + H ++        +  + + G     +
Sbjct: 348 AALSALESMGE--GRRTWAVLGSMLELGDESDTDHAEVGAEAQQRGVDELLVVGETARPM 405

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            D  P     + +    D     +++ +   DVV+ KSS   G   L + L  E
Sbjct: 406 ADIRPVDGTRIRWVADADAAEALLRAEVAPPDVVLFKSSRDAGLRWLGDRLTAE 459


>gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 457

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     +S   + A+TGS GKTTTK+
Sbjct: 63  AVVTLSEKEVANH------PYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+   P D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTEKLVLEMGQDHLGDIHLLSKLAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEVTDLIERKDSLTFKANFLEQALD--LPVTGKYNATNAMIAAYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   ++ V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLNTVIFYGEDIAELSQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 452

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 452

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SM+AA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
 gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
          Length = 468

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 222/461 (48%), Gaps = 31/461 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79
              +  +  I+ D+R++ P E F A++G ++DGH+F+  A++KGA  V+V  +   +   
Sbjct: 24  TPEKTLITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEI 83

Query: 80  ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              S +IP+  V++ L A  K+A   R R    +I++TGSVGKTTTKE++   L++  K 
Sbjct: 84  QQLSNNIPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQGKV 143

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                +YNN IGV  TL ++  + ++ + E+ M   GEI  LTH+  P I +IT +  AH
Sbjct: 144 MKTEANYNNEIGVAKTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLITNVGTAH 203

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +     +E IA AK E+   +  +    LNYD+   + L   +  +     +++G  +  
Sbjct: 204 IGRLGSVEAIAEAKCELLREMSDSSIAILNYDN---QRLIETAAKVWSGETFTYGL-EGG 259

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL---TADVDTA 313
           + Q +            + ++G  +       G H A N L  L ++ +L        T 
Sbjct: 260 NLQGKLIDSQ------TINVEGVDLP--LPLPGSHNASNYLAALAVLKVLHGKNIPAKTL 311

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            ++L+     +  G R R    +    ++DESYNA   SM AA+++L++       R IA
Sbjct: 312 FQSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETP---GKRHIA 368

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETMD 431
           VLG M E+G  S  FH  +  V+   NI  +++        A+      S+     E + 
Sbjct: 369 VLGTMKELGNKSILFHQQVGNVVKNLNIDGLFILADFEEAKAMATGAA-SLQFIKVENIT 427

Query: 432 G------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  L  ++Q  L  GD V+ K+S+S    +++ LL+ 
Sbjct: 428 ADNAHHNLAKYLQEFLQPGDRVLFKASHSVELNKVVELLIN 468


>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 451

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 215/472 (45%), Gaps = 29/472 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    T   L   +    + I        + GI  D+R + P E F A+ G  +DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLVNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+           +PV  V + L A  +LA   R +    +I +TGSV
Sbjct: 61  EMAITRGAVAAIVDYTYNYPD----LPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +  K +   G++NN IGVP TL  +    DF + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLGTRGKVHKTHGNFNNEIGVPKTLLELSQGDDFAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LTH+ +P+I VIT +  AH+      + IA AK E+   +       LNYD+    LL A
Sbjct: 177 LTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMPNDSVAVLNYDNP---LLMA 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +    + S+G S   D Q +           +V++ G ++       G H   N L
Sbjct: 234 TAKQVWSGEVISYGFS-GGDIQGKLVDYQ------KVEVGGMTLP--LPLAGVHNGSNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D    ++A       +GR + ++         ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLGVDW-KLLEAGINVTMPQGRSQSWKLPR---DIMILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+Q       R+IAVLG M E+GE S   H  + E +   N+    V + G     + 
Sbjct: 341 ELLAQTP---GRRKIAVLGAMKELGERSTKLHQQVGETVKKLNLDGLLVLVDGPDAETIV 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  + I          L   +++ +  GD ++ K+++S G  +++     E
Sbjct: 398 TSA-QGIPCERCHNHSDLVSLLKTYVQPGDRLLFKAAHSVGLEKVVQQFCGE 448


>gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
 gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 213/474 (44%), Gaps = 25/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L + +    IG   Q  +  +  D+R +     F A+KG  +D HDF   A
Sbjct: 1   MIPV-SLLVLAEILSAELIGADSQ--IIEVKTDTRKVTAGCLFVALKGERFDAHDFAAAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +V+   +L  P   V D   AL +LA   R +  A ++++TGS GKT
Sbjct: 58  -----VAAGAGALLVSQRLALDAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS   +     G++NN IGVPLTL R+    DF + ELG +H+GEI + + 
Sbjct: 113 SVKEMTAAILSECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTSA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A+I  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   ++   
Sbjct: 173 LARPQAALINNLAAAHLEGFGSLAGVAQAKGEIFTGLPTDGVAIINADNNDWPHWQSM-- 230

Query: 241 ALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  KT++ F     A  +F   + +     +  ++     S E+V    G H   N L 
Sbjct: 231 -LDGKTVWCFSPQATAGVEFFASEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A +    + LS      GR      A N+    L+D+SYNAN  SM  A  
Sbjct: 290 AAALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAANK---LLLDDSYNANVGSMTTAAQ 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+G  +Q  H  + E      I  V   G     L  A 
Sbjct: 347 VLAEMP----GYRVMVVGDMDELGAEAQECHRQVGEAARRAGIDKVISVGGLSRVLSVA- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
             S +  + +    +   +   L + +V  V++K S      +++  L E+ P 
Sbjct: 402 --SGNGEHYQDKAAVIARVAELLAEHEVMTVLIKGSRRAAMEQVVCALQEKTPC 453


>gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 456

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 211/470 (44%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +  +      P   VDDVL A   LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEA------PYILVDDVLKAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSETAIAQAFSKLELTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++ SL   D +++K SNS    +L+  L +
Sbjct: 405 RVHYFVKNDEKDQFEQLTKAVRESLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV104]
          Length = 457

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 204/472 (43%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAATLSEKEVANH------PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     + ++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQVLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
 gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
          Length = 454

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 213/464 (45%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA          +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYRNIND---YPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEI  LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DD     +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPVLREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG   ++D+++   K     S   +             +G+H   N  M++ +  +
Sbjct: 240 KTISFGIKPDSDYRMEMIKADETGSTFSIN----DHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R +          F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDVAKGLKKIELTGMRNELILL----DKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +++VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLILVKASHAMQFDKLVEQIKE 453


>gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 463

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 245 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa]
          Length = 458

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 209/464 (45%), Gaps = 26/464 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA 
Sbjct: 7   LSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V  +    +    +P   V D   AL +L    R +    + A+TGS GKT  KEML
Sbjct: 65  AALVERE----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTAVKEML 120

Query: 127 TIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L +         A  G+ NN +GVPLTL ++       + ELG S +GEI +   L 
Sbjct: 121 ASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELT 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA++   
Sbjct: 181 RPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASG- 239

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + +F      ADF+    ++ +       +Q      +V  + +G H   N L   
Sbjct: 240 --RPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +D  +  L    P +G   R    L      +ID+SYNANPASM AAI +L
Sbjct: 298 AAAHALGVPLDGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDIL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   
Sbjct: 355 SGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAAG-KVSALYAVGPLMAHAVQAFGA 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      L   + +       +++K S S    +++  L
Sbjct: 410 TGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA19]
 gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 452

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
 gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
          Length = 458

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 208/464 (44%), Gaps = 26/464 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA 
Sbjct: 7   LSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V  +    +    +P   V D   AL +L    R +    + A+TGS GKTT KEML
Sbjct: 65  AALVERE----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEML 120

Query: 127 TIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L +         A  G+ NN +GVPLTL ++       + ELG S +GEI +   L 
Sbjct: 121 ASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVGLT 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F   KA+++  
Sbjct: 181 RPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFATWKARANG- 239

Query: 243 GIKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + +F   +  ADF     ++ +       +       +V  + +G H   N L   
Sbjct: 240 --RPLLTFSLEQAQADFHAADLQRDARGCMGFRLHGVAGEAQVQLNLLGRHNVANALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +D  +  L    P +G   R    L      +ID+SYNANPASM AAI +L
Sbjct: 298 AAAHALGVPLDGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDIL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   
Sbjct: 355 GGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAAG-KVSALYAVGPLMANAVQAFGE 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      L   + +       +++K S S    +++  L
Sbjct: 410 AGR--HFADQASLIRALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
 gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
          Length = 456

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 208/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     + I P   +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEIANH------PYILVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEIIDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGINDQILLKGSNSMNLAKLVESLENE 455


>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 442

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 128/437 (29%), Positives = 199/437 (45%), Gaps = 22/437 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G S+D+R+    + +FA++GP++DGHDFI  AV+K A  +VV                 V
Sbjct: 25  GWSVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVERAYGVPGE------LVV 78

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL  L   AR     T+I +TGS GKTTTK+ +   L+S       +G++NNH+G
Sbjct: 79  PDTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAIAHLLASEMPVGKTVGNFNNHVG 138

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL+L R+P     G+ E+GM+H GEIR L  + RP I V+T +  AH+  F  IE IA 
Sbjct: 139 VPLSLLRLPDGCRAGVIEMGMNHSGEIRELGAIARPEIGVVTNVGYAHVEFFDSIEGIAL 198

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+ EGL   G   LN DD       A      I    +FG S++A+ +       + 
Sbjct: 199 AKRELIEGLTPDGVAVLNADDPRVAGFSAVHPGRSI----TFGLSEHAEIRAEDVAAHAG 254

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +          ME      G H   N+L  + + ++          A++ F   + RG+
Sbjct: 255 GTRFRAL----GMEFETGLSGRHAVMNLLAAIAVATVFGIAPARMRDAVASFAAGKMRGE 310

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R           + ++ YN+NP + ++ I VL +       RRIAVLG+M E+G  +   
Sbjct: 311 RTE----HNGIVIWNDCYNSNPEAAQSMIDVLRETPA---RRRIAVLGEMLELGHAADEL 363

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  +    + + +  +        A+ ++  R  +   + E         +     GD V
Sbjct: 364 HRQVGRYAAEHGVDLLIGVRGAARAMVESAARAGLDARFFEDPAEAGDRARELAHAGDAV 423

Query: 448 VVKSSNSCGFYRLINLL 464
           + K S      + +   
Sbjct: 424 LFKGSRGVKVEKALERF 440


>gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
 gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
          Length = 463

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 208/455 (45%), Gaps = 20/455 (4%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A++    G         +S D+R++   + F A++G  +D HDF+  A  +    +VV  
Sbjct: 22  ALKPQLKGG--DAMFTRVSTDTRTLDAGDLFIALRGERFDAHDFLAQAEARQPCAMVVEK 79

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                  ++ +P   V D   AL ++A   R      ++AITGS GKTT K ++   L  
Sbjct: 80  FN----PAIQLPQLVVADSTLALGQVAALNRSLFTGPLVAITGSSGKTTVKTLVASILGE 135

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +T A  G+ NNHIGVPLTL  +     F + E+G S   EI +   L +P +A+I  +
Sbjct: 136 CGETLATRGNLNNHIGVPLTLLELEERHQFAVIEMGASGPSEIAYACSLAKPQVAMINNV 195

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            PAH+  F  I  +A+AK+EI+ GL   G   +N DD+F      +   L  K   +   
Sbjct: 196 MPAHIEGFGSIAGVANAKSEIYGGLVTGGIAVVNIDDAFAPQWIQQ---LAGKKTLTVSL 252

Query: 253 -SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            + +A+ +    +  SE    ++ +  + + ++ +  G H  +N LM       L A ++
Sbjct: 253 ANPDANCRAEAIEYASEHLAFDLLIHRQRLRIILNAQGEHSVRNALMAAACAYALGASME 312

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L+ F P  GR  R R   N     +ID+SYNANP S++AAI VL+Q         
Sbjct: 313 QIQRGLARFAPVAGRMSRQRGIHNA---LIIDDSYNANPGSVRAAIDVLAQAEDS----- 364

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I VLGD+ E+GE +   H  L +     +I+ ++  G                 +    +
Sbjct: 365 ILVLGDLAELGETATEQHAALGDYAKQKHINRLFTLGVLTANTSSHFGEG--AQHFTERN 422

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L   +   L  G  V+VK S S     ++  L E
Sbjct: 423 QLLAALIPLLTSGTTVLVKGSRSSKMDLVVRELCE 457


>gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
 gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
          Length = 457

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     +       +     DSR I P + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVARVVGAKNDVTGYADSPLVKAEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   V+DVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEQEVADH------PYILVEDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+EK   +    D    + L  +      
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKLQIADGMEKGSLLLAPADPIVEDYLPTE------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG    A+ ++ +  +  +   ++     KS++      G + A N ++   +  
Sbjct: 231 QKVVRFG--PGAELEITELTERKDSLTLKANFLEKSLD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVTEEQIGQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G+++AVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKLAVLADMKELGDQSVQLHNQMILSLSSDALDTVIFYGEDIADLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + +   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTAEEDQFEAMVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
 gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
          Length = 513

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 219/491 (44%), Gaps = 35/491 (7%)

Query: 6   TFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQE----AFFAIKGPHYDGH 54
           +   L++   G  I           +  ++ + IDSR+I        AF A+KGP++DGH
Sbjct: 5   SLTTLVKVTDGELIVPAIQTALSLDELVIDDLVIDSRAIKEHSDKCSAFLALKGPNFDGH 64

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F    +++G  L++V+  + A   +       V D   AL K+A   +       + IT
Sbjct: 65  RFAEQVIKQGCQLLIVDHHLSAVTDTA---QLIVSDTRIALGKIAAFVKKEVAPKTVGIT 121

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTT KEM+   LS + K  A  G++NN IGVPLTL R+    DF + E+G +H+GE
Sbjct: 122 GSSGKTTVKEMVAAILSRLGKVLATNGNFNNDIGVPLTLLRLDNSHDFAVIEMGANHMGE 181

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I + T L +P +AVI  IA AHL  F  +  +A AK EIF GL + G    N D  +   
Sbjct: 182 IAYTTALTQPDVAVINNIAAAHLEGFGDLCGVARAKGEIFSGLGENGVALYNKDTKYTSK 241

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMA 293
            + +   L  KT+ +F     A+    K        +   +Q +  S  +     G H  
Sbjct: 242 WQWR---LTDKTVRTFSCVNKANCYSEKVSLDKNGCASFTLQSEQGSCVMTLTVPGKHNV 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPA 351
            N +    I     A ++     L+   P +GR   ++    +      LID+SYNAN  
Sbjct: 299 CNAVAAAAIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGCNVKLIDDSYNANLE 358

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S KAA  +LS       G+++ +LGDM E+G  ++S+H ++        ++ +   G   
Sbjct: 359 SAKAAAQLLSSYP----GKQLLILGDMGELGSEARSYHQEVGGFAKHLQLNTLLSLGVLS 414

Query: 412 LALKDALPRSIHV----HYSETMDGLFLFIQSSL-------VDGDVVVVKSSNSCGFYRL 460
            +  DA  +  H      +      L   + + L            ++VK S S     +
Sbjct: 415 QSASDAFAKDNHKNDQSQHFNQRADLMTHLFTMLSQQLSVGQQDIAILVKGSRSAHMEHV 474

Query: 461 INLLLEEFPAI 471
           +  +++ F  +
Sbjct: 475 VTEIIDWFEQM 485


>gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
 gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
          Length = 458

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 209/464 (45%), Gaps = 26/464 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA 
Sbjct: 7   LSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V  +    +    +P   V D   AL +L    R +    + A+TGS GKTT KEML
Sbjct: 65  AALVERE----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEML 120

Query: 127 TIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L +         A  G+ NN +GVPLTL ++       + ELG S +GEI +   L 
Sbjct: 121 ASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELT 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA++   
Sbjct: 181 RPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASG- 239

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             + + +F      ADF+    ++ +       +Q      +V  + +G H   N L   
Sbjct: 240 --RPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +   +  L    P +G   R    L      +ID+SYNANPASM AAI +L
Sbjct: 298 AAAHALGVPLGGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDIL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   
Sbjct: 355 SGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAAG-KVSALYAVGPLMAHAVQAFGA 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      L   + +       +++K S S    +++  L
Sbjct: 410 TGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
          Length = 463

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 214/467 (45%), Gaps = 22/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I              G SIDSR+I   E FFA++G   DGHD++  A+  GA
Sbjct: 4   TLGQIADWIHAEG-DFDSTALAQGYSIDSRTIGAGELFFAVRGERVDGHDYVETALADGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATIIAITGSVGKT 120
              VV+   +         +  V D     VL ++ KLA   R      II +TGS GKT
Sbjct: 63  VAAVVSMRWLKPATVEEGKLLRVPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE +   LS+        G+ NN  G+PL L ++  + +  + E+GM+H GEIR L  
Sbjct: 123 TTKECIAQVLSAKFHVLKSEGNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALAK 182

Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +  P  AV++ +AP HL +F  GIE IA AK E+ E L   G   LN DD   E + A  
Sbjct: 183 IAEPDWAVVSNVAPVHLEHFPDGIEGIARAKYELVEALPADGIAILNGDD---ERVAAFG 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +  +T+  +G       +  + ++   + +   V + G+  ++    +G H   N L 
Sbjct: 240 KGMRGRTVL-YGTLPGLTVRAVEIEEAGLDGTRFRVGIVGRVQKIHLRLMGRHNVLNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +      D+     AL    P E RG+       +    +I++ YN+NP +++A + 
Sbjct: 299 AVAVGLQSGIDLKDCCLALEQMRPTEKRGEVIE----RHGAKIINDCYNSNPRALEAMVE 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDA 417
            L +       RRI + G+M E+G    + H +    +++  +  V    G     ++ A
Sbjct: 355 ALRKTKAT---RRIVMAGEMLELGPEGAALHRECG--IAMAGMDVVVGVRGLAASLVEGA 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  ++ ET +    +++ +L +GDVV++K+S      + +  L
Sbjct: 410 ESEGVEANFVETPEAAGEWLRENLREGDVVLMKASRGVRLEKALAGL 456


>gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
 gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 478

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 200/464 (43%), Gaps = 22/464 (4%)

Query: 15  QGHSIGIVPQGFV----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            G   G  P   V      + IDSR I   E F A+KG   DGH F+  A +KGA   +V
Sbjct: 19  NGQLSGFAPDDPVIFQEPTVVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIV 78

Query: 71  NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + +  +  G              D   A+ +LA   RL+    +I I GS GKTTTKEM 
Sbjct: 79  SREWFSRQGSSAHEAGARYLVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMT 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +    +   G++NNH+GVPLTL  +    +  + E+G++H GE+  L  +  P  
Sbjct: 139 ASVLRARYSVHMSEGNFNNHLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTH 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIK 245
            ++T I   HL     ++ +A+A+  ++  ++K  G +F+N +DS      A     GI 
Sbjct: 199 GMLTNIGHEHLEFLRDLDGVANAETALYRYVQKSGGVVFVNREDSRLTEAAA-----GIP 253

Query: 246 TIYSFGKSKNAD-FQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +   +G +   + F     +  +   +   +     +  V     G H   N +    + 
Sbjct: 254 STVGYGIALEGEGFWAEDIRMDNLGRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATVG 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     L    P+EG  +        G  T+++++YNANP S++ A+ +L ++
Sbjct: 314 FHFGLTQEEIAGGLERLKPEEGWKRLE--FQRAGGITIVNDTYNANPDSVRNALDLLCEL 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSI 422
                G+R+AV+GDM E+G +S   H ++    +    +   +  G              
Sbjct: 372 P--VTGKRVAVIGDMLELGGVSSPEHEEIGRYAASLDGLDAFYTFGEQAALCCRTAGMKC 429

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             H+ +    L   +  SL  GDV+++K S      R+   L+ 
Sbjct: 430 AGHFMD-HGELQHLLHESLSPGDVLLLKGSRGMKLERVAEGLMN 472


>gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
 gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
          Length = 463

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 245 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 VDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
 gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 208/472 (44%), Gaps = 30/472 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLTPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           L20]
 gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 464

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 206/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNIS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD+      L      +GR               ID++YNAN  SMK
Sbjct: 293 NALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A+SVL          RI  +GDM E+G  S++ H  +A+ +   N+  V   G     +
Sbjct: 350 SAVSVLKNYPAF----RIFAVGDMAELGGESEACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 210/458 (45%), Gaps = 26/458 (5%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA  V+V  
Sbjct: 4   ALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVER 61

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +    +    +P   V D   AL +L    R +    + A+TGS GKTT KEML   L +
Sbjct: 62  E----VADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRT 117

Query: 133 IKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                    A  G+ NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+
Sbjct: 118 QAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAI 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA++     + + 
Sbjct: 178 ITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASG---RPLL 234

Query: 249 SFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +F      ADF+    ++ +       +Q      +V  + +G H   N L        L
Sbjct: 235 TFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHAL 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D  +  L    P +G   R    L      +ID+SYNANPASM AAI +LS  S  
Sbjct: 295 GVPLDGIVAGLQALQPVKG---RAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFS-- 349

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   +    +
Sbjct: 350 --GRTVLVLGDMGELGSWAEQAHREVGAYAAG-KVSALYAVGPLMAHAVQAFGATGR--H 404

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 L   + +       +++K S S    +++  L
Sbjct: 405 FADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 441


>gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
 gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 450

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 206/467 (44%), Gaps = 34/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL      + G +P   V G+  D+R++AP   F A++G  +DGHD+   AV  GA
Sbjct: 8   TLQTLL---GAEAEGTLP-MSVRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+    +        +P   V D L A   LA   R R    ++A+TGS GKTTT+E+
Sbjct: 64  ALVIAERPVA-------VPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTREL 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++     A  G+ NN +GVP  L ++     + + E+GM   GEI  L     P+
Sbjct: 117 IRAVLATAGPVLAPPGNENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPN 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +  AH+        IA AK E+   L  +G   LN +D   E L + +      
Sbjct: 177 VGVITNVGSAHIGRLGSHAAIADAKCELLAELPCSGIAVLNGED---ERLLSTARRHWAG 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + ++G     D            S+  V L    +  +    G H   N L  L +   
Sbjct: 234 PVLTYGLDAG-DVM---------GSFDGVHLHVDGIAFIPPLPGRHNHLNFLAALAVARH 283

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  ++    + L       G   R R    +G   LIDE+YN+ P S +AA++ L+ +  
Sbjct: 284 LGLELLQVRERLKDLQLPTG---RSRVIALEGDVQLIDETYNSAPESARAALAWLAGLP- 339

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIH 423
              GRRIAVLG M E+GE S+  H  L E      +  V +  +G    AL         
Sbjct: 340 ---GRRIAVLGQMRELGEFSRELHRVLGEHCRRLALDEVVVLEAGEDTEALLAGAGDLPA 396

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           V  ++    +  ++   +  GD ++ K+S + G  R++    + F A
Sbjct: 397 VQLADHR-AVAAYLADRVRPGDRLLFKASRAVGLERVLAEFQDLFRA 442


>gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
 gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
          Length = 454

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 207/469 (44%), Gaps = 25/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLG--LPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL KLA A R      +  ITGS GKT
Sbjct: 58  LAAGATAVVVSREDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAGVLRHRFGDEAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSL 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT +  P++A++     AH+   F G+ +IA AK+EI+EGL   G   +  +D+     +
Sbjct: 174 LTRIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLSDGVALIPCEDANIATFE 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +  L I+   +FG +   D      +        ++    + + VV    G H   N 
Sbjct: 234 AATVQLNIQ---TFGIASG-DVHAENIELKPLSCTFDLVRGNERVAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +       +      L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 VAAAALALAAGLSLAEVSDGLKNFSNIKG---RLNIKQGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+ +       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLAAMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +         +    D L   +   L +   V+VK S       ++  L
Sbjct: 403 ETF--GAEGLWFADKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEAL 449


>gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 487

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 130/492 (26%), Positives = 200/492 (40%), Gaps = 34/492 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ +A+ G          V G +  DSR +     F A+ G   DGHDF   
Sbjct: 1   MIEL-TLAEIAEAVSGRLHRADGGERVTGSVEFDSRKVTDGGLFVALPGERADGHDFAAS 59

Query: 60  AV-----------QKGAGLVVVNTDMVASIGSLSIPVFGVDD--------VLGALNKLAV 100
           AV           +  A  V+V           S+ + G  D         L AL +  V
Sbjct: 60  AVAAGAAGVLAAREVDAPAVIVPPLPPGQAHERSVALAGDTDGSGAAVLAALAALARHVV 119

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                +  T++ +TGS GKT+TK+++   L  +  T A  GS+NN +G P T  R     
Sbjct: 120 TRLSETGLTVVGVTGSSGKTSTKDLIAQLLEPLGPTVAPPGSFNNELGHPWTALRADRKT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL     G I  L  +  P I V+  +  AH+  F   E IA  K E+ E L   
Sbjct: 180 RHLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHVGEFGSQEGIARTKGELVEALPAE 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
           G   LN DD F   +  ++ A     +   G+S  AD +    +     ++  ++   G+
Sbjct: 240 GVAVLNVDDPFVAEMAQRTSA----RVVGVGESPKADVRAENVRLDEHARASFDLVAGGE 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             EV    +G H   N L    +   L   +      LS    +    +R          
Sbjct: 296 RAEVRLQLVGEHHVGNALAAAAVALELGMPLSEVAAGLSAATRRSE--RRMEVTTRSDGV 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++++SYNANP SM+AA+  L+ ++     R  AVLG M E+G  S S H ++  +    
Sbjct: 354 TVLNDSYNANPESMRAALKTLASMTSS--RRSWAVLGVMSELGADSVSAHDEIGRLAVRL 411

Query: 400 NISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           NI+ + + G    A+                    D     ++  L   DVV+VK+S   
Sbjct: 412 NINRLVVVGEQAAAMHRGASHEGSWGEESVLVPDTDAAVALLREQLRPNDVVLVKASKVA 471

Query: 456 GFYRLINLLLEE 467
             +R+ + LLEE
Sbjct: 472 ELWRVADALLEE 483


>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
 gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 480

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 211/487 (43%), Gaps = 47/487 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++G   G   Q   +G  IDSR +   E FFA+ G   DGHD+I  A QKGA +V+   +
Sbjct: 2   VRGELTG-DSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKE 60

Query: 74  MVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +     + +P    +  V+  L A+  LA A R    A ++AITGS GKTTTK+M+   
Sbjct: 61  RLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAV 120

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   + +  + + NN +G+P+T+   P + +  I E+GM  LG+I FL  + RP I VI
Sbjct: 121 LSEKYRVHKNMENQNNELGLPMTILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVI 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   H+      + IA AK E+ E L +TG+  LN +D +   L  +         + 
Sbjct: 181 TNIGTTHMELLGSQQAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQ----DSHQTFF 236

Query: 250 FGKS---KNADFQLRKWKQCS-EQSWMEV--------------------QLQGKSMEVV- 284
           +G        D +           +  +V                    ++  K+   V 
Sbjct: 237 YGLEGRFHEPDLRGMNLTPFGILGTRFQVGHRQVGHGDRCAVPFAEVAAEVGQKTCPHVS 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   + L  L +  +L   ++            E    R          TLI +
Sbjct: 297 LPLPGEHNVLDALAALSVGILLDVSLEE---GCRGLAAMELSRMRLELHQGPEGSTLISD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            YNANP SMKA++ VL +    G    +A+LG+M E+GE S+  H ++ + ++   IS +
Sbjct: 354 VYNANPTSMKASLQVLKE---RGGASTLAILGEMYELGEASREGHYEVGQTVAELGISEL 410

Query: 405 WLSGFHVLALK-DALPRSI---HVHYSETMDGLF---LFIQSSLVDGDVVVVKSSNSCGF 457
              G     +   AL + +    +H     +G       + + L  G  V++K+S     
Sbjct: 411 ITVGPLAEEIACGALEKGLSPQRIHSFPDREGAIKKAQELLADLNQGTWVLIKASRGMKM 470

Query: 458 YRLINLL 464
             +   L
Sbjct: 471 EEVTRAL 477


>gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
 gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           35/02]
 gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI18]
 gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA6140]
 gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID24-1]
 gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI2]
 gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
          Length = 452

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
 gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
          Length = 454

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 208/468 (44%), Gaps = 25/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+     L++       +     +N I  D+RS+   + F A++G  +DGH FI  A+  
Sbjct: 7   LFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTA 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV  TD        ++  F V+D L A   +A   R R    II +TGSVGKTTTK
Sbjct: 67  GAIAVV--TDRPVEGLGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS     +    +YNN IGVP TL  +  D DF I E+ M   G+I  L  + +
Sbjct: 125 ELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT +  AH+        IA AK E+        T  LN D++   LL   +    
Sbjct: 185 PTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNA---LLMETAQRFW 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G  +  D       +        + L G S+       G H A N L  + + 
Sbjct: 242 QGKTITYGL-EGGDVHGTVDGEN-------LILDGVSLP--LPLAGVHNASNYLAAIAVA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    +++       +GR +RY+         L+DE+YNA   SM A++ +L+  
Sbjct: 292 QCLGLDWQQ-LQSGLTVELPKGRARRYQ---WGQDVVLLDETYNAGLESMLASLDLLANT 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                 RR+AVLG M E+G+   +FH  +   +    +  ++L     +  A+  A    
Sbjct: 348 P---GKRRLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNTDAIA-AGANG 403

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           +          L   ++++L  GD ++ K+SNS G   +++ LL E P
Sbjct: 404 VETQSFSDGPSLVAALKTTLQPGDRLLFKASNSVGLGAVVSQLLAENP 451


>gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
 gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
          Length = 463

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D +             ++    +   VV    G H   N 
Sbjct: 245 TATFNLNT---CTFGVDSG-DVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 VDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
          Length = 458

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 210/450 (46%), Gaps = 17/450 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84
            G+S DSR++ P   + A+ G   DGHDF+  A   GA L +V+ D+  S    +     
Sbjct: 13  TGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHA 72

Query: 85  -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDDV  A++ LA A R   KA I+ +TGSVGKTTT+ ++   L+S  +     G++
Sbjct: 73  AVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGNF 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P TL +     +  + E+GM  LG+I  L  + RP   VIT +  +HL      
Sbjct: 133 NNELGMPYTLLQTEPSCEVLVLEMGMDGLGQIADLARIARPKYGVITNVGVSHLERLGTR 192

Query: 204 EEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHA--LGIKTIYSFGKSKNADFQL 260
           + IA AKAE+ EGL    G  FL  D  + + +   + A   GI+ +   G ++N+D   
Sbjct: 193 DNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIRIVRFDGTAENSDVYA 252

Query: 261 RKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  +      +  +G+S        G H   N      +       +D    ALS 
Sbjct: 253 TDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGLEFGIALDQVAAALSG 312

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P+ G   R     +   F + D++YNA+P SM AA++VL+  S    GRRIAVLGDM 
Sbjct: 313 VEPESG---RQALKRSSRGFLVFDDAYNASPESMAAALNVLASFSAS--GRRIAVLGDMG 367

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFL 435
           E+G      HI+  +  +   I  +   G     + DA  +       V      D    
Sbjct: 368 ELGSAEVEGHINTGKAAAQAGIDMLVCVGAMSRYIADAARKGGMAVKSVIEVADADAAAT 427

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +      GDVV+VK+S+  G  R++  ++
Sbjct: 428 TVLDIAQPGDVVLVKASHFMGLDRVVERVV 457


>gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
 gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
          Length = 464

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 172/464 (37%), Positives = 243/464 (52%), Gaps = 12/464 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWTF +L +A  G   G+      +GI+ DSR++ P + F A++G   DGHDF+  A   
Sbjct: 9   LWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFAS 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA L V    +             V DV  AL  +AV AR R  +     +TGSVGKT+ 
Sbjct: 68  GAVLAVTRRPIEGGA------CLLVPDVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +M+   L    + ++ I S+NNHIGVPLTLARMP D +  +FE+GM+H  EI  L+  V
Sbjct: 122 TQMVMQGLQQAGRAHSAIKSFNNHIGVPLTLARMPADTERAVFEIGMNHADEITPLSEFV 181

Query: 183 RPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            PH  VITT+   H  NF   E  +A+AKAEIF+GL   G   LN D+ +F+ L  K+  
Sbjct: 182 APHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLAILNADNRWFDHLSTKARG 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G   + +FG++   D QL + +   +++ +  +  G+ +       G H A N L  L 
Sbjct: 242 SGAL-VAAFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALL 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L  D+DT++ AL  F   EGRG+        G  T+IDESYNANP SM A ++ L 
Sbjct: 301 MLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSMTATLASLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q      GR++AVL DM E+G      H  LAE +    +  V+L+G  +  L DALP  
Sbjct: 361 Q--RETAGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYLAGPLMKHLWDALPSG 418

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   Y+ T   L   +   L  GDVV++K SN      +   LL
Sbjct: 419 LKGGYAATAADLLAAVTEGLQAGDVVMLKGSNGSKAGLIAKALL 462


>gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 464

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 206/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNIS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + AD+      L      +GR               ID++YNAN  SMK
Sbjct: 293 NALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     +
Sbjct: 350 SAVSVLKNYPAF----RIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI  L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLIFAL 456


>gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
 gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
          Length = 502

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 149/512 (29%), Positives = 248/512 (48%), Gaps = 67/512 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L +A+    I I      N +  +S+ +   + F A+KG + DGHD++L A+ K
Sbjct: 2   IWNSETLSKALG---ITISNSINCNEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+  +     +    +  VDD   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GANAIIVSKHIDIVDKN---KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSS--------------------------------------------------- 132
             L   L+                                                    
Sbjct: 115 GALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEVSYI 174

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               +A  G++NNH+G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT +
Sbjct: 175 KGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMITNV 234

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           + AHL  F+ +E+IA AK EIFE   K     +N + + +  + +    L I  IY+FG 
Sbjct: 235 SEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYNFGA 294

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S N   +L  +    +Q  ++ ++  K++E+    I  H A+N +  L I++IL  ++D 
Sbjct: 295 SYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKNLDI 354

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A   L+   P +GRG+            +I + YNA+P SMKAA+  L Q+       + 
Sbjct: 355 AANHLANISPTKGRGEMINIQ----NCCVICDYYNASPQSMKAALEYLKQVPAEN---KT 407

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           A++GDM E+G+ S++ H +L   +   + S V+L G +   + + LP  I   Y + +D 
Sbjct: 408 AIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIYNLLPFKIAKKYFKNVDE 467

Query: 433 LFLFI--QSSLVDGDVVVVKSSNSCGFYRLIN 462
           L   I       + +++++K S      ++++
Sbjct: 468 LITHITVTDLFKNNELILIKGSRGIKLDKIVD 499


>gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola]
          Length = 453

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 119/469 (25%), Positives = 211/469 (44%), Gaps = 17/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      ++ I I+++ I P   F A+ G ++D H FI  A
Sbjct: 1   MISL-SLKTIASITNGQLYG--KDLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KG   ++ +  +        I    V +   AL ++A   R ++ A I+AITGS GKT
Sbjct: 58  IKKGCSAIITHKHI-----KSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L     T + IG+ NN+IGVP+TL ++     + + ELG +  GEI ++++
Sbjct: 113 TVKEMTASILRKYGNTISTIGNLNNNIGVPITLLQLNKYHKYAVIELGANQPGEISYISN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  +HL  F  +  ++ AK+EIF GL+  G + +N D   F   K    
Sbjct: 173 MTQPEIILINNIQYSHLQGFKSLLGVSQAKSEIFSGLKPNGKVIINLDSHHFSKWKKNIK 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S  K +N++F        S  +   +     ++ +    +GY    N L   
Sbjct: 233 NNHV-IYFSIKKKQNSNFFSSNITIDSYGTTFVMHTPNGTINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   ++                +R +  +      LID++YN+N ASM  AI VL
Sbjct: 292 ALAFALKIPLNIIQIG---LADTPIISRRLQSIILNPDKILIDDTYNSNVASMITAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V+GDM E+GE S  +H  +    +L +I+ ++  G     + D    
Sbjct: 349 EKMP----GYKILVIGDMSELGENSFLYHRMIGNAANLSDINKIFSIGNISNEITDIFHN 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             H  + + ++               +++K S +     ++  L++E+ 
Sbjct: 405 GKHFLHKKDLNKYLKKYFLKKTK-ITILIKGSRNTKMDEVVENLIQEYK 452


>gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus influenzae 10810]
          Length = 457

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 137/476 (28%), Positives = 210/476 (44%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTVQ-LAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V        V   +     S+SIP   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  V----AQGAVAVVVQQENSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDAF----LILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 457


>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 204/442 (46%), Gaps = 14/442 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           +SIDSR +     F A+ G   DGH F+    ++GA +V+V+ +  ++ GS   P     
Sbjct: 33  VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  L +LA   R      ++ + GS GKTTTKEML   LS+  + +    + NN
Sbjct: 93  LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL  M  + +  + E+G++H GE+  LT + RP   ++T I   HL     ++ 
Sbjct: 153 HLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDG 212

Query: 206 IASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +A A+  +F  L++  GTIF+N DD     L+  +       +Y          +     
Sbjct: 213 VARAERALFSFLDETGGTIFVNNDDP---RLRDAATDPQRHILYGMHCGDCCSCRGGALS 269

Query: 265 QCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              + S    +  +    E+  +  G H   N L    +      +     + L    P+
Sbjct: 270 VLPDGSLRFMLYSERGDEEIRLNFTGRHNVLNALAAAAVGIFFGIEPREVRRGLEGLVPR 329

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           EG  +    +   G  TL++++YNANP SM+ AI  L  +    +GRRIAV+GDM E+G+
Sbjct: 330 EGWKRLEVVS--AGGVTLLNDTYNANPDSMRLAIDALLDMP--CQGRRIAVIGDMLELGD 385

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                H    + L+  ++  ++  G    ++    P     H++ + + LF  +   L +
Sbjct: 386 AGPGEHEATGKYLAGSSVDMIFSFGELAGSICFLNPGRCRGHFT-SREKLFDALSRELEE 444

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
           GD V+ K S        +  +L
Sbjct: 445 GDTVLFKGSRGMKLEETVTAIL 466


>gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
           27126]
          Length = 431

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 131/430 (30%), Positives = 202/430 (46%), Gaps = 23/430 (5%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
              + A+KGP+++GHDFI  A + GA  V+ + D+  S     +PV  V+D   AL  L 
Sbjct: 1   GAVYLALKGPNFNGHDFISTAEKAGASAVIASEDVATS-----LPVIMVEDTKEALGLLG 55

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A +       IAITGS GKTT KEM    L       A  G++NN IGVPLTL R+   
Sbjct: 56  AAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFNNDIGVPLTLLRLEPQ 115

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + ELG +H+GEI + T+LV+P +A I   A +HL  F  +  +A AK+EIF+GL  
Sbjct: 116 HEYAVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGS 175

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQ-SWMEVQL 276
            G   +N D  F E  + K   L      +F   +  +ADF+        +  +   +  
Sbjct: 176 DGVAVVNVDSQFSEFWQGK---LKQTKTLTFSPQQKNDADFRAEDITIGLDGCAAFHLVC 232

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               M +     G H   N L+   +   + A ++     L       GR    +     
Sbjct: 233 PQGDMSIQLTIPGVHNVGNALVAAALTLQVGASLENVRDGLLAMKQVSGRLNVKQLTEQ- 291

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+D++YNAN AS+ AAI  LS  S    G R+ VLGDM E+GE ++ +H  + E  
Sbjct: 292 --VRLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKELGEKARFYHEQVGEYA 345

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--VDGDV-VVVKSSN 453
               I++++  G    +       +    +   ++ L   ++S L     D+ ++VK S 
Sbjct: 346 KQKGINYLYTMGVLSQSASAVFNEN--GGHFSDVESLLAAMESDLLVQQRDISILVKGSR 403

Query: 454 SCGFYRLINL 463
           S    R++  
Sbjct: 404 SSRMERVVEA 413


>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
 gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
          Length = 451

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 217/468 (46%), Gaps = 29/468 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN---GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T   L++ +    I +          GI  DSR++   E F A++G  +DGH F+  A+ 
Sbjct: 6   TLSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIA 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V+ +          PV  V D L A  ++    R R    +I +TGSVGKTTT
Sbjct: 66  KGAIAAIVDFEYENP----GFPVLRVKDTLKAYQQIGRWWRDRFNIPVIGVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L +  + +   G+YNN IGVP TL  +  + D+ + E+ M   G+I  LT + 
Sbjct: 122 KELIAAVLGTKGQVHKTYGNYNNEIGVPKTLLELGAENDYAVIEMAMRGRGQIAELTQIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT +  AH+      E IA AK E+   +       +N+D+    LL A +  +
Sbjct: 182 RPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMAADSVAIINHDNP---LLMATAAKV 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++G S   D Q     Q  +   MEV      +++     G H A N L  L +
Sbjct: 239 WHGEVLTYGFS-GGDIQ----GQLLDNDQMEVA----GIQLPLPLPGRHNATNFLAALAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D    +KA        GR +R+          ++DE+YNA P +M A++ +L+ 
Sbjct: 290 AKVLGIDWSN-LKAGVEVDMPTGRSQRFTLP---NDVIILDETYNAAPEAMIASLQLLAD 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPR 420
                  R+IAVLG M E+GE SQ  H  + E +   N+    V + G    A+      
Sbjct: 346 TP---GKRKIAVLGAMKELGERSQQLHQRVGETVRKLNLDGLLVLVDGEDAEAMA-LSAE 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            I      T   L   +++ +  GD ++ K+++S G  R++N L  EF
Sbjct: 402 GIPSECFATHAELVARLKTFVQTGDRLLFKAAHSVGLDRVVNQLRAEF 449


>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 443

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 230/472 (48%), Gaps = 35/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  ++   +   +   + G   Q  V G++ +SR +   + F A+     DGH ++  A
Sbjct: 1   MN--YSIKKIGAVLSAVTQGND-QIKVTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+V+ +   S     +P   V D L AL +LA   R +    +IAITGS GKT
Sbjct: 57  LDRGAAAVLVDDNHAISEK---LPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M    +S++ KT+    ++NN IGVP+TL  MP D +  + ELGM   G++  L+ 
Sbjct: 114 TTKDMTAAIVSTVFKTFKTPNNFNNEIGVPMTLLSMPEDTEVLVVELGMDRSGQLTMLSQ 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA+IT I  AH+  F     IA AK EI  GL+  G +F+ +D+         + 
Sbjct: 174 LVQPDIAIITMIGEAHIEFFKTRANIAKAKLEITNGLKADGVLFIPFDEPLL------TQ 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ ++ +  FG++ +A       +  S+ +        K+       IG +   N L  +
Sbjct: 228 AVIMQRVVWFGQNIDA------VETASDHTNFIY----KNTRFAIPLIGGYNIMNALAAI 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L  D+  A++AL  F   + R +R   A       LI + YN+NP ++ A ++ L
Sbjct: 278 SAGILLHIDLKKAVQALQTFDLTKNRTERLVTAR---GVILISDVYNSNPTAVAAVLATL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----HVLALKD 416
             I       +  VLGDM E+GE +   H  L + +   N+  V+L G     ++  +  
Sbjct: 335 KAIPAQH---KYVVLGDMLELGEQANELHAGLGQKVLDANVDGVYLVGKLFNQNMAPMLK 391

Query: 417 ALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               S  VH    + +  L L +Q+    GDV+++K+S+      ++N L+E
Sbjct: 392 TQFESSDVHQYTTDQLAKLTLDLQTLGEAGDVILLKASHGIHLENVVNALIE 443


>gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
 gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
          Length = 457

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 208/474 (43%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +   + + +     +     DSR IA  + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +    +         P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKKVANH------PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLIERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRQA---FQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGVNDQILLKGSNSMNLAKLLESLENEAK 457


>gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
 gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
          Length = 478

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 167/473 (35%), Positives = 249/473 (52%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G ++G       +G+SID+R++   + F A+K    DG DF+  A++K
Sbjct: 3   LWTATEAAAATGGRAVG---DWSCDGVSIDTRTLQAGDLFVALKDVR-DGQDFVATALEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+            P+  VDDVL  L  L  AAR R+ A ++A+TGSVGKT+TK
Sbjct: 59  GAGAALVSRVPDGVADD--APLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML    +   + +A + SYNNH GVPLTLARMPVD D+ + E+GM+H GEI  L  L +
Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPVDTDYAVIEIGMNHPGEISPLAILTK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++TT+A  HL  F  +  IA  KA IF+GLE  G   +N D     +L AK+    
Sbjct: 177 PDAAMVTTVAAVHLEAFDDVAGIALEKAAIFDGLEPGGVAVINADIDHAAILMAKAVDRR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ I  FG++    F+L+  +   + + ++    G  +       G H A N L  L + 
Sbjct: 237 LRDIE-FGENAY-HFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGALAVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             + AD+  A  +L  + P +GRG R    L+    +   +LID+SYNANP SM AA+ V
Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAAALEV 354

Query: 360 LSQ------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+       I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  + +
Sbjct: 355 LAASEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMRS 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L D +P      ++ T   L   + + L  GDVV+ K S S     +++ + +
Sbjct: 415 LYDLIPAHQRGDWAATSAELLPGLGAHLDSGDVVLAKGSLSMKLGLIVDAIRK 467


>gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
 gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
          Length = 453

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 209/461 (45%), Gaps = 23/461 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L    +G  +    +GF +G+S D+R       F  +KG  +DGH FI  A++ GA   +
Sbjct: 8   LKSIAKGSRLKEDRRGF-SGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGAL 66

Query: 70  VNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
               + V      +  ++ V+D L AL  LA A R +    +I ITGS GKTTTK+++  
Sbjct: 67  WKEQEPVPEQLPETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVAS 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+     +   G+ NNHIGVPLTL  MP D  + + E+GM+H GEI  LT + +P+ A+
Sbjct: 127 VLAGTAAVHKTKGNLNNHIGVPLTLLAMPEDCTYAVVEMGMNHAGEISTLTQIAKPNAAI 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT+I  AH+ +    E IA+AK EI +GL K   +  + D+        ++         
Sbjct: 187 ITSIGDAHIEHLGSREGIAAAKMEIADGLIKESWLLFDGDEPLLSPYNEQAET------- 239

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G S  A  ++   K         +             +G H  +N    + +   L  
Sbjct: 240 TVGFSDQAATKISDVKTLENGYVFYLN----GARWQLTMLGKHNVKNAAYAILLAQKLGF 295

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                 K LS        G R          T+I+++YNANP SMKAAI  + ++     
Sbjct: 296 SNAMIQKQLSSL---AITGMRLEKLKGPNGSTIINDAYNANPTSMKAAIETVKELP--HY 350

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHV 424
            RR+ VLGD+ E+G+  ++ H  +A  +    I+ V   G     + +A        I +
Sbjct: 351 KRRVLVLGDIYELGQDEEALHKSVATAIEP-PITDVVTVGKKGRWIYEAQLDKKDSRISL 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +++T+      ++       VV++K+S       ++  + 
Sbjct: 410 VHADTVVEAAEILKPYYTKDTVVLIKASRGLALEEVLPAVK 450


>gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
          Length = 457

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 204/474 (43%), Gaps = 30/474 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +    +         P   VDDVL A   L+     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKKVANH------PYILVDDVLTAFQTLSAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS   KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P
Sbjct: 117 MLAHLLSITYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G++    +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMDSGSLLLAPADTIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENEAK 457


>gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 464

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/476 (26%), Positives = 208/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNIS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +GR        +     LID++YNAN  SMK
Sbjct: 293 NALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQH---CLLIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A++VL          RI  +GDM E+G+ S + H  +A+ +   N+  V   G     +
Sbjct: 350 SAVAVLKNYPAF----RIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           luteolum DSM 273]
 gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium luteolum DSM 273]
          Length = 476

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 193/445 (43%), Gaps = 14/445 (3%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----VF 86
           +IDSR+I     F A++G   DGH F+    ++GA   +V+ +  +       P      
Sbjct: 34  AIDSRAIDGPGIFIALRGESTDGHRFVQDVFRRGADFAMVSREWHSLEKDPVPPPGKAYI 93

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    L +LA   R      ++ I GS GKTTTKEM    L +  K +   G++NNH
Sbjct: 94  VVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKEMTAAVLRTGFKVHVSRGNFNNH 153

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+TL  M  D +  + E+G++H GE+  LT + RP   ++T I   HL     +E +
Sbjct: 154 LGVPITLLGMRRDTEIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGV 213

Query: 207 ASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             A+ ++F+ L++  GTIF+N DDS    L   +       +Y  G  +           
Sbjct: 214 RLAERKLFDWLDRCRGTIFVNADDS---RLADAATDSERHVLYGTGSPEGRICSAESVSV 270

Query: 266 -CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +    +       +V     G H  QN +    +              L    P+ 
Sbjct: 271 GHGGRVSFTLTAGAVREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPES 330

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G  +       +G  T+I+++YNANP SM+ A+  L+ +     GRRIAV+GDM E+G  
Sbjct: 331 GWKRLELSE--EGGVTIINDTYNANPDSMRLALDTLADMP--CSGRRIAVIGDMLELGAT 386

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           ++  H  +   L+   I   +  G         LP     H++   D L   +Q  +  G
Sbjct: 387 AEDEHRSIGRYLAGLPIDMFFTFGALAGLGGRELPERCRGHFTG-RDELLHALQEEVRSG 445

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V+ K S      +    L+ E  
Sbjct: 446 DAVLFKGSRGMHLEQTAGALILELK 470


>gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 464

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/476 (26%), Positives = 208/476 (43%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    ++   +
Sbjct: 174 YTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQA-FYYPQWQ 232

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     +++    G  ++  ADF     +     S   +      +E+    +G H   
Sbjct: 233 KEIGEHELQSFSYIGSDQDSYADFWAENVELGLSGSHFTLHSPQGEIEINLPYLGAHNVS 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +GR        +     LID++YNAN  SMK
Sbjct: 293 NALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQH---CLLIDDTYNANVDSMK 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           +A++VL          RI  +GDM E+G+ S + H  +A+ +   N+  V   G     +
Sbjct: 350 SAVAVLKNYPAF----RIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGKQSAVI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
                     H+      +  F+   +          V++ K S S     LI+ L
Sbjct: 406 S-----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
          Length = 453

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 212/467 (45%), Gaps = 28/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + +         +    GI+ D+R++   E F A++G ++DGH F+  A++ GA
Sbjct: 6   TPAQLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV  D       L +P+  V+D L A   +A   R +    +IA+TGSVGKTTTKE+
Sbjct: 66  IAAVV--DRSWESEGLDLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKEL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++         +YNN IGVP TL  +     + + E+GM   GEI FLT + RP 
Sbjct: 124 IAAVLTTKGNVLKTQLNYNNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPT 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT +  AH+      E IA AK E+   +       LN D++   LL A +  +   
Sbjct: 184 IAVITNVGTAHIGRLGSREAIAQAKCELLAEMPNDSIAILNSDNA---LLMATAAKVWQG 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  K         +   +++     +   S+ +     G H A N L  L +  +
Sbjct: 241 ETLAYGLEKGN----LCPELIDDRT-----ISIDSINLPLPLPGRHNAVNYLAALAVAKV 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +     LSV     GR KRY  A       ++DE+YNA   SM AA+ +L+    
Sbjct: 292 LGVSWEPLKGGLSV-DLPSGRAKRYELA---NDIVILDETYNAGLESMIAALKLLADTP- 346

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALP---- 419
               R IAVLG M E+GE S  FH  + E     N+  +++        A+         
Sbjct: 347 --GKRHIAVLGTMKELGERSLEFHRQVGEKARELNLDALFILADFEEASAIATGAAGLPF 404

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +   +  + +   +Q  +  GD ++ K+S+S    R++ LL+
Sbjct: 405 VELGDITQVDAREMMAKRLQEFVKAGDRILFKASHSVELNRVVQLLV 451


>gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
 gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
          Length = 463

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/468 (34%), Positives = 240/468 (51%), Gaps = 13/468 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  LW   DLL A  GH            G+SID+R++ P + F A++G + +GHD +  
Sbjct: 1   MTLLWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHVAR 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA  VV + D           +  VDD L A+  +A  AR R    ++A+TGSVGK
Sbjct: 61  ALEAGAACVVAHEDCGTDPR-----ILRVDDTLAAMQAMARYARARFGGRMLAVTGSVGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ K+ML  AL++   T+  + SYNNH GVPLTLAR+P    + + E+GM+H GEI  L 
Sbjct: 116 TSVKDMLHAALAACGPTHCAVASYNNHWGVPLTLARLPAGAAYCVCEIGMNHAGEIAPLA 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRP +AV+TT+A +HL     +E IA  KAEI   L + G   +  D    +    ++
Sbjct: 176 AMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRGGIGIIP-DGVSGQAFFERN 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    T++  G  +         +  +  S   ++L G   E      G HMA N ++ 
Sbjct: 235 AAQAGATVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVGEAHVSAPGRHMAANAMLA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG      AD+  A+  L+ F P  GRG   +    Q    L+DESYNA+PAS++AA+ +
Sbjct: 295 LGAACAAGADMARAVAGLATFRPGAGRGAMTKV--MQDKVALLDESYNASPASVQAALDL 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  ++P   GRR+AVLGDM E+G  +   H+ L       N   V+  G ++  L D LP
Sbjct: 353 LGLVAP---GRRVAVLGDMLELGAFAGHEHVSLL-PAVRANADIVFCCGPNMKTLFDTLP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S+   ++     L   ++++L  GD V+VK S       ++  L  +
Sbjct: 409 PSLRGAWTPDSGQLAPLVRAALRAGDTVMVKGSLGSRMRHVVASLQAD 456


>gi|163854998|ref|YP_001629296.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella petrii DSM 12804]
 gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bordetella petrii]
          Length = 943

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 193/439 (43%), Gaps = 21/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+RSI   E F A+ G  +DGH ++  A   GA   +V       +   S+P   + 
Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIV----AHPVDGASLPQLVLG 561

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   AL ++  A R R    +I + GS GKTTTKEM+   L+         A  G++NN 
Sbjct: 562 DTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGNFNND 621

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       + ELGM+H GEI  L  L  P +A++T     H      +E +
Sbjct: 622 IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALVTNAQREHQEFMHSVEAV 681

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A       E L + G      DD    + +A++   G + +  FG     D    +    
Sbjct: 682 AQENGASIEALPEDGVAVFPGDDPHCGIWEAQA---GARRVLRFGLQPGLDVYAEQIDAT 738

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   V     S ++V    G H  +N L  +       A +  A++ALS F    GR
Sbjct: 739 PHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGAVRALSAFSAVAGR 798

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R           LID++YNANP S++AA+ VL+++       R  VLGDM E+G+   
Sbjct: 799 MQRQTL---DDGTILIDDTYNANPDSVRAAVDVLARLPAP----RALVLGDMGEVGDNGP 851

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H ++ E    + I  ++  G        A           ++D +   ++ +      
Sbjct: 852 AMHREVGEYARQHGIDTLYTLGEASRDSAAAFGPGALA--CASVDEIVAALRGARPAS-- 907

Query: 447 VVVKSSNSCGFYRLINLLL 465
           ++VK S      R++ +L+
Sbjct: 908 LLVKGSRFMRMERVVKVLV 926



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 166/464 (35%), Gaps = 39/464 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            + +DSR +A  + F A  G   DG  FI  A+ +GA  V+        +      V  V
Sbjct: 27  HLRLDSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPAPGDVA-TDARVRAV 85

Query: 89  DDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+   L +LA     R  +  +++A+TG+ GKT+  + +   L+   K    IG+    
Sbjct: 86  PDLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGTLGAM 145

Query: 147 IGVPLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVITT 191
           +    TL       D                    L  S +G  +     VR  +A  T 
Sbjct: 146 LPDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAGFTN 205

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E    AKA +F+         +N DD+  E L  ++   G+   Y+  
Sbjct: 206 LTRDHLDYHGSMERYEQAKARLFQW-PGLAAAVINADDAAGERLL-RTLPRGLALGYTQQ 263

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               A FQ R+ +  +      +       +VV   +G H   N+L+  G++  L   + 
Sbjct: 264 DVPTA-FQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGWPLA 322

Query: 312 TAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +AL+   P  GR +       R     G   L+   Y+  P S+  A++ L  ++  
Sbjct: 323 QLARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAALRPVADA 382

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISHVWLSGFHVLA----LKDALPRS 421
             GR + + G   E     +     + A++     +S     G    A    +   +PR 
Sbjct: 383 RGGRLVCLFGCGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIVAGIPRG 442

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS------SNSCGF 457
             +          +    +    DVV++  K       +     
Sbjct: 443 ARLQVEADRARAIMQTIWAADPDDVVLLAGKGHETYQDAGGVKL 486


>gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
 gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
          Length = 468

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 134/482 (27%), Positives = 211/482 (43%), Gaps = 42/482 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V  +S D+R+++    F A+KG  +D HDF  +A+  GA 
Sbjct: 6   LAQLADVLGAELIGN--DITVANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMDNGAA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTT 122
            ++V+  +        +P   V D   AL  L    +           IA+TGS GKTT 
Sbjct: 64  ALLVSRHLPVE-----LPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    LS      +  G++NN IGVPLTL R+  + +F + ELG +H  EI + T+LV
Sbjct: 119 KEMAAEILSQKGNVLSTAGNFNNDIGVPLTLLRLTAEHEFAVIELGANHQQEIAYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLK 236
           +P +A++  +A AHL  F  +  +A AK EIFEGL          T  +N D +   + +
Sbjct: 179 KPQVALVNNLAAAHLEGFGSLAGVAKAKGEIFEGLTAPLNDSGLSTAIINVDSNDLAMWQ 238

Query: 237 AKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
                  +K   +F  +  +ADF        SE  +   ++    ++++     G H   
Sbjct: 239 PLLAQHAVK---TFSLTDIDADFSATDIFINSEGRACFTMRTSAGTIDITLTLAGIHNVS 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +G   R   +  +    LID++YNA+ AS+K
Sbjct: 296 NALAAAALAMTVGATLEQVKAGLEQVVNVKG---RVDVSHPREGLRLIDDTYNASVASVK 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI +L+  +    G+R  VLGDM E+GE S S H ++AE      +  V+  G     +
Sbjct: 353 AAIDLLASFT----GQRWFVLGDMAELGEESASLHREVAEYAMTKALDKVFTFGCASAVV 408

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLV---------DGDVVVVKSSNSCGFYRLINLLL 465
            D         +      L   +Q+ L              V+ K + S     +I  L 
Sbjct: 409 SDL----NQGQHFADKSKLIEQLQAQLHLRNINQQHYQEVTVLAKGARSSRMEDVIAALQ 464

Query: 466 EE 467
           E+
Sbjct: 465 ED 466


>gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
 gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
          Length = 427

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 213/439 (48%), Gaps = 27/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  D+R I     FFA+ G +++G+ F   A++ GA  VV++      +   +     
Sbjct: 14  TGICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGET---IL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            D+ L  L KLA   R      I+A+TGS GKTTTKE++   LS    T A  G+ NNHI
Sbjct: 71  TDNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  + + GI E+G +HL EI  L H+ +P+   IT    AHL  F  +E + 
Sbjct: 131 GVPLTLLSMTKETEIGIVEMGANHLKEIETLCHIAQPNYGYITNFGKAHLEGFGSLEGVI 190

Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++  ++  G +F+N +D        +      +  Y+FG ++  D +++  +  
Sbjct: 191 KGKTELYKHIVKSDGLLFVNAND------AKQLELTKKEKRYTFG-NEGNDCEIKLLEAT 243

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   + +  QG+S+    + IG +   N+   + I            +A+  + P   R
Sbjct: 244 KE---LIISYQGQSI--NSNLIGLYNYHNIAAAIAIGQYFKVSATKVKEAIEEYIPTNNR 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    Q   T+I ++YNANP+SM AA+    Q   +    +I +LGDM E+GE + 
Sbjct: 299 SQIIK----QNGHTIILDAYNANPSSMTAALDNFKQTVGNN---KILILGDMFELGETAS 351

Query: 387 SFHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             H  +A+ +S  NI + V+L G +   +K     + H+H   T + L   ++    +  
Sbjct: 352 KEHQAIADKISSQNIGNTVYLVGENFSKIK---TDNKHMHLCPTFEALQSNLKHQKPNNA 408

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      R + LL
Sbjct: 409 TILIKGSRGMALERTLKLL 427


>gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
 gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
          Length = 459

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 137/467 (29%), Positives = 219/467 (46%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L T   + Q +     G   Q   +G++IDSR ++P + F A+ G   DGHDF+  A
Sbjct: 2   MSAL-TLSAIAQRLGVAYTGASLQ--FSGVAIDSRQVSPGDLFIALPGERVDGHDFVDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V   +      +SIP   V + L AL+++  A+R  S + ++AITGS GKT
Sbjct: 59  IARGAIAALVERPV-----QVSIPCLQVSNCLDALSEIGRASRDLSASVVVAITGSCGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K +     S    T A  G+YNN IGVPLTLAR+  D  + I E+G +  G+I  L  
Sbjct: 114 TVKNLCRSIFSEAGSTVATAGNYNNEIGVPLTLARLQDDTRYAIVEMGATKRGDIAHLCT 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP I  +     AHL  F  + ++A  KAEI++GL  +G   +N D  +  L + +  
Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIYDGLGSSGAAIVNLDQPWVPLWRDRIA 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G + +       +AD  +   ++C  E S   + ++G+S  + +   G H   N L  
Sbjct: 234 QAGAQALSYSLDDSSADLYVSGLQECGLEGSAFTLHIRGESRALKYPLPGRHSVANALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +       +D  +  L     + G   R +        TLID+SYNANP S++AA   
Sbjct: 294 AALAIAAGLSLDQIVVGLEHAQAEPG---RLQSERLGNDKTLIDDSYNANPGSVRAA--- 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +     G  + +LG+M E+G  S   H ++ E+  L  I+     G  V    +A  
Sbjct: 348 -ITLLAATAGESLLILGEMLELGAESPERHAEMGELARLSGITRFVGVGEAVRPAVEAF- 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  +  + + L   +   L   D ++VK S       +++ L E
Sbjct: 406 -GANGQWFASREALTPKLADLLGASDTILVKGSRGAAMESVLSALRE 451


>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 445

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 227/459 (49%), Gaps = 25/459 (5%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L + ++G   G  PQ  V G SIDSR +   + FFA+KG  +DGHDF+  AV +GA   
Sbjct: 5   ELAKVLRGELRG-DPQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGC 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV  D+  +          V     AL +LA+  R   +  ++ + GSVGKTTTKE++  
Sbjct: 64  VVERDVEHAGKFS----IKVSSTQEALRELALYRRGIFRGEVVGVAGSVGKTTTKELIHH 119

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS+   ++   G+ N+ IG+PL +  MP++VD+ + ELG S +G++  L  + +P + V
Sbjct: 120 LLSNAAASFRSEGNLNSQIGLPLVVCNMPLEVDYAVLELGASAVGDVERLVEVAQPKVRV 179

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT +   HL +F  +E++     EIF G  +     + +          + + L  + + 
Sbjct: 180 ITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPH-------YALEYYDLPRERVT 232

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG  +  D    K +   + +  E   +G S+      +   + QN+L   G+++ L  
Sbjct: 233 TFG--EGGDLNAGKVRLSLKGTEFEFWGEGFSV----PLLSRGVVQNVLAAFGVLTSLGY 286

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     +AL  F P +GR        N G F ++D++YNANP S++ A++ L+ +     
Sbjct: 287 DPRDFREALKSFTPPQGRMNLL----NFGNFFVVDDTYNANPPSVRNALTTLASLQT--T 340

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYS 427
            +++AVLGDM E+G  S  +H ++ ++ +   I  +   G     + ++ +    +  + 
Sbjct: 341 SKKVAVLGDMLELGVESGRYHAEVGKLGAELGIDVIIFHGEESKRSYEECIKHGGNALFC 400

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  + +   +   + D ++++VK S       ++  + E
Sbjct: 401 DKKEDIVDELLKYMRDKNIILVKGSRGMRMEWIVEKMGE 439


>gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
 gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
          Length = 472

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 169/473 (35%), Positives = 241/473 (50%), Gaps = 20/473 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  D   A  G + G   +   +G+SID+R+IA  + F A+     DGHDF+  A+ K
Sbjct: 3   LWTATDAAAATGGRTSG---EWAASGVSIDTRTIAKGDLFVALADIR-DGHDFVGMALDK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V             P+  V +VL AL  L  AAR R+ A +I ITGSVGKT+TK
Sbjct: 59  GAAAALVTHRPEGVADD--APLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +  K +A   SYNNH GVPLTLARMP D +F I E+GM+H GEI  L  + +
Sbjct: 117 EMLRTVLQAQGKIHAAEASYNNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAKMAQ 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ITT+APAHL  F  + EIA  KA I EGL   G +  N D   +++++  + A  
Sbjct: 177 LDAAMITTVAPAHLEAFGSVAEIAVEKAAITEGL--NGPLIANRDIETWDVIRDVAAAAE 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  + FG   +A F L   +     + +  +  G  + +     G H A N L  + + 
Sbjct: 235 TQVTW-FGAQADA-FVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAVAVC 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359
             + AD+  A   ++ + P  GRG R    L+         L D+++NANP SM+A++ V
Sbjct: 293 DAVGADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRASLEV 352

Query: 360 LSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L+   P        +GRRIAVLGDM E+G      H D+A   SL  ++ V   G  + +
Sbjct: 353 LAATQPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPRMRS 412

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L D LP      + E    L     S +  GDV++VK S       +++ L +
Sbjct: 413 LYDVLPEGQRGQWVEIAGELAGKAHSLIDAGDVILVKGSKGSKVSLIVDALRK 465


>gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 535

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 145/480 (30%), Positives = 214/480 (44%), Gaps = 26/480 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +  +++ A  G  +G+     +      + DSR + P   F A  G   DGH+F+
Sbjct: 1   MIKL-SAAEIITATGGSPLGLAGRESELGATFATTDSREVIPGTLFVAKPGEVTDGHNFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113
             A  KGA L +V   +    G L  P   VDDV+ A+ K+A  A    R     T+I I
Sbjct: 60  SGAFDKGAVLALVERPVKDERGILY-PSIQVDDVVLAMGKIAQYAVEKMRSLGDLTVIGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L   LSS  +T A +GSYN  +GVPLT+ R      + + E+G  H+G
Sbjct: 119 TGSAGKTTTKDLLAAILSSQGETIAPVGSYNGEVGVPLTVFRADESTRYLVIEMGADHVG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L ++V P   VI  +  AH   F G++ I   K E+ EG+   GT+ LN DD    
Sbjct: 179 NIEYLANIVHPDHGVILKVGTAHAGEFGGVDNIERTKGELAEGIRTGGTLILNADDERVA 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQS-WMEVQLQGKS-MEVVHHG 287
            + A++ A     +  FG  +   ++                   ++L   S  E+    
Sbjct: 239 RMSARASA----PVTYFGVGEKPQYERYTAALGLHTNDAGCPEFTLRLPDASEYEISSKL 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H   N+L    +        D    AL+          R          T+I+++YN
Sbjct: 295 IGEHHVCNILAAATVAYNAGVPGDAIAHALNNTGALSKW--RMARTDRADGVTVINDAYN 352

Query: 348 ANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ANP SM AA+  L+Q+    + RR  AVLG M E+GE S   H  L  ++   NIS +  
Sbjct: 353 ANPESMTAALRTLAQLGRGAKPRRTWAVLGAMLELGEASLEEHDRLGRLVVRMNISKLIA 412

Query: 407 SGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            G       +A            + ET       +++ L  GD+V+ KSSN      L +
Sbjct: 413 VGNEAKPAYNAAHLEGSWGNEATWVETPQEALNILRAELRSGDIVLFKSSNGAKLGSLGD 472


>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
 gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
          Length = 466

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 203/474 (42%), Gaps = 23/474 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+         I G  +        + +  DSRS+ P + F A+KG  +D HDFI   V
Sbjct: 4   TPMTNLQQAAGWIAGARVCGDGAVEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+ ++        +P     D   AL +L    R +     +A+TGS GKTT
Sbjct: 64  ARGAAAVLVSREV-----DAGVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTT 118

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++    ++  A  G+ NN IG+PLT+ R+       + ELGM+H GE  +L
Sbjct: 119 VKEMIAAIFAAAVGEEQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKA 237
             + +P +AVIT     H      +E +A   A     L   G      D +S       
Sbjct: 179 AGIAQPTVAVITNAQREHQEFMVSVEAVAHEHAAAIAALPANGVAVYPLDAESGGAYAPV 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +A G +   SFG S+ AD              M+V+  G + +V    +G H  +N L
Sbjct: 239 WRNAAGARRALSFGTSQRADVHAT-VTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +         V    + L+ F   +G   R +     G   +ID++YNANP SM+AAI
Sbjct: 298 AAIACALAAGVHVPAIQRGLAGFQAVKG---RLQVKYTPGGTVVIDDTYNANPDSMRAAI 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ VLGDM E+G+   +FH ++        I  +W +G   +    A
Sbjct: 355 DVLAGFAAP----RVLVLGDMGEVGDQGPAFHQEIGAYAKARGIGTLWATGELAVHAVQA 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSS----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +  T + L   ++      +     V+VK S      R++  L+ +
Sbjct: 411 FGAGGR--HFGTAEALAKALEEDSRGMVEQVGAVLVKGSRFMRMERMVAALVAD 462


>gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
 gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 207/457 (45%), Gaps = 17/457 (3%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G ++G   +     +SIDSR I     FFA+KG   DGH+++  A + GA   VVN +  
Sbjct: 18  GFALGEAVEWCDPSVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWY 77

Query: 76  ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                S+         V D + AL +LA   R +    +I I GS GKTTTKEM    L 
Sbjct: 78  SRHAESVHQEGWRYLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKEMTAAVLG 137

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +  K +   G+ NNH+GVPLTL  +    D  + E+G++H GE+  LT + RP  A++T 
Sbjct: 138 TTYKVHMSKGNLNNHLGVPLTLFGLRDTHDLAVVEMGINHPGEMELLTSIARPDFALLTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I   HL     ++ +A A+  ++   + + GT+F+N  D+   LL A   A  I+    +
Sbjct: 198 IGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDA--RLLAA---AREIQNRVDY 252

Query: 251 GKSKNAD-FQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           G  ++ +     K        +   +     S+ ++ H  G H   N +    + S    
Sbjct: 253 GPERDGNLIWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAVGSCFNV 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++   + L    P +G  +        G   + +++YNANP S+  A+  + +I     
Sbjct: 313 PLNAIAEGLGSLVPADGWKRLEFIE--AGGIRIFNDTYNANPDSVTMALKTVCEIP--CS 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           GRR+ V  DM E+GE+S + H  +  +++      V+  G H      +       HY+ 
Sbjct: 369 GRRVLVFADMLELGEVSDAEHRRMGALVAQLPFDAVYTYGEHAALSCLSAGPKCRGHYT- 427

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   L   +++ L   D++++K S       +   L 
Sbjct: 428 SHAHLLDALKAYLSQDDLLLLKGSRGMRLELIAEGLR 464


>gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
 gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
          Length = 430

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 213/440 (48%), Gaps = 24/440 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+  D+R+I     FFA+KG +++G++F   A+++GA  VVV+                
Sbjct: 14  SGVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKEH---YIL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +VL +L KLA+  R      I+AITGS GKTTTKE++   L    KT A  G+ NNHI
Sbjct: 71  VQNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    +FGI E+G +H  EI FL  +  P    IT    AHL  F  +E + 
Sbjct: 131 GVPLTLLSMDDHTEFGIVEMGANHPLEIEFLCTIANPDYGYITNFGKAHLEGFGSLEGVV 190

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            AK E+++ L E+   IFLN DD      +  +H       +SFG+S  AD QL      
Sbjct: 191 KAKTELYKNLQERHKLIFLNIDDEVQRKHENYNHT------FSFGESNEADVQL-----S 239

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +      QL   + +      G + A+NM   L I        +    ALS + P   R
Sbjct: 240 YQSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKFEEIQTALSNYSPDNNR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +    A N    T+I ++YNANP SM AA+    Q+  + +  +IA+LGDM E+G  + 
Sbjct: 300 SQTLNTASN----TIIMDAYNANPTSMHAALENFKQLKTNKQ--KIAILGDMFELGSSAV 353

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  +A  +   + +  +L G +      +   S  +   ++++ L   ++ +      
Sbjct: 354 TEHQIIANYVQNSDFAETYLLGDNFKNTNTS---SNFIFKFKSIESLKEHLKETDFQNCY 410

Query: 447 VVVKSSNSCGFYRLINLLLE 466
            ++K S      R+++ + +
Sbjct: 411 FLIKGSRGMALERVLDSIKK 430


>gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
 gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
          Length = 474

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 199/478 (41%), Gaps = 23/478 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++  A+ G  +   P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIAL-SLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           AVQ GA  V+   ++        +P+  V D L A+ +LA A   R  + T+I +TGS G
Sbjct: 60  AVQAGAAAVLGTREVPG------VPMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++    + + +T A  GS+NN +G P T  +      + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLTARLGETVAPPGSFNNELGHPYTALQAVPSTRYLVLEKGARGIGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I+V+  +  +H+  F   E IA AK E+ E L   G   LN DD   + +  +
Sbjct: 174 CEVAPPRISVVLNVGVSHIGEFGSQENIALAKGELVEALPADGLAVLNADDPLVDAMAGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++ +AD +               +     S  V     G H   N L
Sbjct: 234 TTA----RVVRYGEAAHADVRAVDVTLDERGRPAYTLVTPEGSATVRLALTGRHQVWNTL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL          +R          T+ID+SYNANPASM  A+
Sbjct: 290 AAAAVARELGMPLVEIAVALGELGLVS--TRRMDVFERTDGVTVIDDSYNANPASMSVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +      R  AVLG M E+GE     H ++  + +   +  + + G     +   
Sbjct: 348 RALAGVGA--GRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLLVVGEAAAPIHHG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                                  ++S L  GDVV+VK S     + + + L  +  A 
Sbjct: 406 ATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLVKGSR-YRTWEVADALRADAVAT 462


>gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
 gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
          Length = 470

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 195/465 (41%), Gaps = 18/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +++       I G S+          +S DSRS  P + F AIKG  +D HDF+    ++
Sbjct: 3   MFSLRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               V+V      +  + S+P   V D   AL  LA   R +    ++A+TGS GKTT K
Sbjct: 63  NVAAVLVAR----TPENWSVPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHRLAVVELGMNHPGETEQLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +AV+      H    + +E +A   A +   L   GT     DD++  + +  + 
Sbjct: 179 LAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPEGTAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F  +          +   +   + +      ++V    +G H A N L   
Sbjct: 239 G---NRIIDFALNNAERTTEAAVQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +D   + L  F   +GR +  + AL      T+ID++YNANP SM+AAI V
Sbjct: 296 SAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      E  R+ V+GDM E+G+    FH ++        +  ++  G        A  
Sbjct: 356 LAS----RESPRVLVMGDMGEVGDNGPVFHREIGAYAKERGVDALYAMGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 412 AG--AHHVADVGALVAQLQQAGFGAAATLLVKGSRFMQMERVVDA 454


>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
 gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
          Length = 457

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 141/466 (30%), Positives = 213/466 (45%), Gaps = 29/466 (6%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL     +L A   H           GI  D+R + P E F A++G ++DGH F+  A+
Sbjct: 18  IPLLQLPQILAATAVHLDAGQGLTA-QGICTDTRGLQPGEVFLALRGANFDGHQFVQRAM 76

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++GA   + +  +         P   V D L A   L    R   +  +IA+TGSVGKTT
Sbjct: 77  EQGAIAAITDQVLPGDF-----PQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTT 131

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   L           +YNN IGVP TL ++  D  + + E+GM  LGEI  LT +
Sbjct: 132 TKELIAAVLGLQGSVLKTEANYNNEIGVPKTLLQLTTDHAYAVIEMGMRGLGEIASLTRI 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP IAVIT +  AH+      E IA AK E+   +  T    LN D+    LL   +  
Sbjct: 192 ARPDIAVITNVGTAHIGRLGSREAIAQAKCELLAEMPTTSVAVLNADNP---LLIETATE 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      S+G            +   +   +EV  +G+         G H A N L  L 
Sbjct: 249 VWSGKTLSYG------LTAGDLRGHLQGDMLEV--EGQCFP--LPLPGQHNALNYLAALA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L  D    ++ L   +  EGR K +R         L+DE+YNA P SM+AA+ +L+
Sbjct: 299 VAKLLGLDWKPLLQGL-QVNLPEGRAKSHRL---GEDVVLLDETYNAGPESMEAALRLLA 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALP 419
           Q       RR+AVLG M E+G+ +   H  + + +   N+  + +   G    AL     
Sbjct: 355 QTP---GKRRLAVLGPMRELGDYALELHYQIGQKVRELNLDGLLVLDMGEEGTALVKGAA 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++ T   L  ++Q S+  GD ++ K+S+S G  R++N L 
Sbjct: 412 PLPSQQFA-THTELVNYLQDSIQPGDRLLFKASHSVGLDRVVNSLK 456


>gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 132/453 (29%), Positives = 202/453 (44%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +      +
Sbjct: 32  IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL-----DV 86

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R + S+  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 87  DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A     I +FG     D   
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKA---HRISTFGV--GGDVYA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   + +   +     S  V     G H  QN    +     +   ++  ++ L   
Sbjct: 262 TDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +    +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQ----KSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGVKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  V   +T      F+ +
Sbjct: 374 LGDSSWQEHYDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 441

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 223/449 (49%), Gaps = 32/449 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            G + G++ +S+ +   + F A+   + DGH++I +A+  GA  V+V+   V    +  I
Sbjct: 19  NGLITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKHVI---NTKI 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   VDD L AL +L    R +   TIIAITGS GKTTTK+ML   +++  +T+    ++
Sbjct: 75  PAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPENF 134

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  MP + +  + ELGM   G++  L+ LVRP +A+IT I  AH+  F   
Sbjct: 135 NNEIGVPMTLLMMPENTEVLVVELGMDRPGQLTVLSRLVRPDVAMITMIGEAHIEFFKTR 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA AK EI  GL+  G +F+ +D+         + A+  + +  FG+  N        
Sbjct: 195 ANIARAKLEIVSGLKSDGVLFIPFDEPLL------TEAIVQRQVILFGQGVN------NI 242

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  S+ +    Q    + +     IG +   N L  +    +L  D+    KAL  F   
Sbjct: 243 EAFSDHTMFVYQ----NTQFAIPLIGGYNIMNALAAISAGILLHIDLKKVAKALQTFDLT 298

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R +R   A       LI + YN+NP ++ A ++ L  I       +  VLGDM E+G+
Sbjct: 299 KNRTERLVTAR---GVVLISDVYNSNPTAVAAVLATLKAIPAPH---KYVVLGDMLELGD 352

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGF----HVLALKDALPRSIHVHYS--ETMDGLFLFI 437
            +   H +L + +    +  V+L G     ++  +  A   S+  H    + +D L L +
Sbjct: 353 QANKLHANLGQKVLDSGVDGVYLVGPLLNKNMAPIIQAHIDSVDFHQYATDQLDQLRLDL 412

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           Q+    GDV+++K+S+      ++N L++
Sbjct: 413 QTLGEKGDVILLKASHGIHLETVVNALMK 441


>gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. RCC307]
 gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. RCC307]
          Length = 464

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 210/473 (44%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQG----HSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M+P     DL + +       S    P         IS DSR++ P + F  ++G  +DG
Sbjct: 1   MSPSLCLQDLARLLDAPVQRRSAPADPTTLAWTFEHISTDSRALQPGDLFIPLRGERFDG 60

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           HDF+  AV  G    ++  D    +      V  VDD L A  ++A+A R +    ++A+
Sbjct: 61  HDFLDAAVSVGVAGALIARDWAGYVPEQLATVV-VDDTLSAYQQIALAWRRQLHCPVVAV 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTT+E++   LS +    + +G+ NN IGVP T+ R        + E+GM  LG
Sbjct: 120 TGSAGKTTTRELIKACLSPLGAIESSVGNENNDIGVPRTMLRSNSSHAGLVLEMGMRGLG 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L+    P +AVIT I  AH+        IA AK EI + L+ +G + +   D   E
Sbjct: 180 EIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQAKCEITDRLKPSGLLVIPAGDPLLE 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              ++  +  ++ +               W    +   +E+  QG  +++++   G H A
Sbjct: 240 AEVSRVWSGRVQRVALSDDPLEPGTPAPDWVAQLQGQSIELASQG--LKLINPLEGRHNA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L+ L     L    +             GR +R R         ++DE+YNA+P +M
Sbjct: 298 RNFLLALAAAQELGVTAEQLRDLSVSL--PGGRARRLRI----NGVNILDETYNASPEAM 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHV 411
            A++ +L Q      G R AV+G M E+G+ S S H  + E  +   +  + +   G   
Sbjct: 352 LASLELLKQQP---GGHRYAVVGTMLELGDQSLSLHRQVGEKATALGLDGLVVVASGPEA 408

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            AL         +    + +     ++  L  GD V++K+S      RLI LL
Sbjct: 409 SALMQGAAGLSKLVCVASPEAAAEPLKQLLRPGDHVLLKASRGIALERLIPLL 461


>gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
 gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
          Length = 470

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 193/465 (41%), Gaps = 18/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +++  +    I G ++       +  IS DSRS  P + F AIKG  +D HDF+     +
Sbjct: 3   MFSLREAAALIPGATVLGDDSVTIERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               V+V      +    ++P   V D    L  LA   R R    ++A+TGS GKTT K
Sbjct: 63  NVSAVLVTR----TPQDWNVPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSELAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +AV+      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPEGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F  +          K     + + +      +EV    +G H A N L   
Sbjct: 239 G---NRIMDFALNSAERTTEAAVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +D   + L  F   +GR +  +  L      T+ID++YNANP SM+AAI V
Sbjct: 296 SAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LASRPAP----RVLVMGDMGEVGDNGPAFHREIGAYARDRGIDALYAMGDASRDACTAY- 410

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
              + H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 411 -GANAHHVADIGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 454


>gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
 gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
          Length = 539

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 215/485 (44%), Gaps = 36/485 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +   +++A  G +IG+     Q + +  + DSR +     F A  G   DGH FI
Sbjct: 1   MIKL-SAAQIIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAI 113
             A ++GA L +V  +++   G +  P   V DV+ A+  LA       R + + T+I I
Sbjct: 60  PMAFERGATLALVEREVLDEQG-MPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L    +    T A +GSYN+ +GVPLT+ R      + + E+G  H+G
Sbjct: 119 TGSAGKTTTKDLLAAIFAPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L ++  P    I  +  AH   F G++ I   K E+ EG++ TG++ LN DD    
Sbjct: 179 NIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDERVL 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNAD---------FQLRKWKQCSEQS-WMEVQLQ-GKSME 282
            + ++S A     I  FG  +  D               +          ++L  G   E
Sbjct: 239 RMASRSVA----PITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYE 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG H   N+L    I        +   +AL+          R          T+I
Sbjct: 295 ISSQLIGEHHVHNLLAAATIAYNSGISGEKIARALNKAAAASKW--RMARTDRADGVTVI 352

Query: 343 DESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           +++YNANP SM AA+  L+Q+      +     R  AVLG M E+G+ S   H  +  ++
Sbjct: 353 NDAYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLV 412

Query: 397 SLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              NIS +   G     + +A            + +T +     +++ +  GD+V+ KSS
Sbjct: 413 VRMNISKLIAVGDETKPIYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSS 472

Query: 453 NSCGF 457
           N    
Sbjct: 473 NGAKL 477


>gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechocystis sp.]
          Length = 454

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 207/468 (44%), Gaps = 25/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+     L++       +     +N I  D+RS+   + F A++G  +DGH FI  A+  
Sbjct: 7   LFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTA 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV  TD        ++  F V+D L A   +A   R R    II +TGSVGKTTTK
Sbjct: 67  GAIAVV--TDRPVEGLGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS     +    +YNN IGVP TL  +  D DF I E+ M   G+I  L  + +
Sbjct: 125 ELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT +  AH+        IA AK E+        T  LN D++   LL   +    
Sbjct: 185 PTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNA---LLMETAQRFW 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G  +  D       +        + L G S+       G H A N L  + + 
Sbjct: 242 QGKTITYGL-EGGDVHGTVDGEN-------LILDGVSLP--LPLAGVHNASNYLAAIALA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    +++       +GR +RY+         L+DE+YN    SM A++ +L+  
Sbjct: 292 QCLGLDWQQ-LQSGLTVELPKGRARRYQ---WGQDVVLLDETYNDGLESMLASLDLLANT 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                 RR+AVLG M E+G+   +FH  +   +    +  ++L     +  A+  A    
Sbjct: 348 P---GKRRLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNTDAIA-AGANG 403

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           +          L   ++++L  GD ++ K+SNS G   +++ LL E P
Sbjct: 404 VETQSFSDGPSLVAALKTTLQPGDRLLFKASNSVGLGAVVSQLLAENP 451


>gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 462

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 215/468 (45%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +        V G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPVAATA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +     L      V D L A+ +LA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAADHLPVTTKLI--TLVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F   ++IA AK EI +GL+  GT   N D+    LL+ ++  +
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP---LLQERAKKI 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG                  +   V+     +      +G +   N L  L +
Sbjct: 237 TQER-ETFGLHPENTIFAHSISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRKFHVKPEIMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
            +    GR IAVLGDM E+GE S + H  LAE L    +  V+L G  + AL DAL    
Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHASLAEALDPKEVQVVYLYGSDMKALADALAAKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +H +  +  + +   +Q+ +   D+V++K+S+      +++ L+
Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALV 457


>gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii SDF]
 gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii]
          Length = 466

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 211/471 (44%), Gaps = 25/471 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W    L QA QG+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      
Sbjct: 14  WIAQQLQQATQGYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAAN 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V   + A      I    V D   AL +L    R ++ +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPIDAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V
Sbjct: 129 KEMLGSILSRLAPTLINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI+  +   G   +   D F   ++  + + 
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKS- 247

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I SFG     D    + +   + +  ++     S  V     G H  QN    +  
Sbjct: 248 --HQIMSFG--AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++  +K L      +GR    + A +      ID++YNANP SM+AA  VL Q
Sbjct: 304 ALALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRS 421
                 G ++ V+GD+ E+G+ S   H DL   L+   + H+   G F   AL+ A   S
Sbjct: 360 ----QNGIKVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIVAVGQFASAALEGAGLHS 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
             +   +T      F+ + +          + K S       L+  L+E+ 
Sbjct: 416 TKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
 gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
          Length = 466

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 201/453 (44%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +      +
Sbjct: 32  IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL-----DV 86

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 87  EIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A     I +FG     D   
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKA---HRISTFGV--GGDVYA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   + +   +        V     G H  QN    +     +   ++  ++ L   
Sbjct: 262 TDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +    +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQ----KSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGLKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  V   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
 gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
          Length = 447

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 216/467 (46%), Gaps = 24/467 (5%)

Query: 4   LW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +W   T  +   A  G  IG      V  IS D+RS+   + + A+KG ++DGH ++  A
Sbjct: 1   MWSDPTLQNWADAGAGELIGD--DRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGAG VVV      ++    +P   + D    L  LA   R R    +IA+TGSVGKT
Sbjct: 59  IHKGAGAVVVQ----DALPDCPVPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T+ MLT          A  G++NN IGVP T  R+       + ELG +   EI +L  
Sbjct: 115 STRAMLTEIFKLQPGLLATEGNFNNDIGVPKTWFRLTDQHQRVLLELGANAQQEIAWLGS 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPHI+++   A AH   F G+E +   K EI +     G + LN DD  +     ++ 
Sbjct: 175 FSRPHISLLLNAAEAHTEGFGGLEGVRQGKGEIIDATHSEGGVVLNKDDPAYNRWLKQA- 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + I +FG+  +AD  L  +K  S  S   + +    + V    +G HMA N     
Sbjct: 234 --GDRKIVTFGRHSDADVCLLSFKNNSHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +         + LS   P+ GR +            LI ++YNANPAS +AAI VL
Sbjct: 292 ATAWLAGVSALDIAQGLSAMQPEPGRMEPVDSMHGG---ALIHDAYNANPASFRAAIDVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +        + + GDM E+G+ S + H ++  + +   I H+W  G   L + DA   
Sbjct: 349 EDLGED----TLLIAGDMAELGDESANLHREVG-LYARGKIQHIWSVGKESLQISDAFG- 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               H+ E+++ L   + + L     V+VK S S G  R+++ L  +
Sbjct: 403 ---GHHFESIEELLAMLPAKLETETAVLVKGSRSSGLERVVDALRRK 446


>gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W]
 gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II]
          Length = 462

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 215/468 (45%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +        V G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPAAATA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +     L      V D L A+ +LA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAADHLPVTTKLI--TLVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F   ++IA AK EI +GL+  GT   N D+    LL+ ++  +
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP---LLQERAKKI 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG                  +   V+     +      +G +   N L  L +
Sbjct: 237 TQER-ETFGLHPENTIFAHSISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRKFHVKPEIMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
            +    GR IAVLGDM E+GE S + H  LAE L    +  V+L G  + AL DAL    
Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADALAAKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +H +  +  + +   +Q+ +   D+V++K+S+      +++ L+
Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALV 457


>gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
 gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 200/446 (44%), Gaps = 22/446 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  ++ D+R +     F A+KG  +D HDF  +A+  GAG ++V+  ++     + +P 
Sbjct: 1   MITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSKRLL-----VDVPQ 55

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL + A   R +    ++A+TGS GKT+ KEM    L          G++NN
Sbjct: 56  IVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNN 115

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  
Sbjct: 116 DIGVPLTLLRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALVNNLAAAHLEGFGSLAG 175

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKW 263
           +A AK EIF GL   G   +N D   +   +     L  K ++ F     ++ DF     
Sbjct: 176 VAQAKGEIFAGLPANGIAIINADSHDWSHWQT---TLAHKQVWRFSPLGGEDIDFYATDL 232

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +   +     +      + V     G H   N L    +   + AD+D     LS     
Sbjct: 233 RIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADLDAVRVGLSQLKAV 292

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR      A       L+D++YNAN  SM AA+ VL+++     G R+ V GDM E+GE
Sbjct: 293 PGRLFPLVLA---DGKLLLDDTYNANVGSMTAAVQVLAEMP----GYRVMVAGDMAELGE 345

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            ++  H  +     L  I  V   G     +  A   S H  +      L   + + L  
Sbjct: 346 TAEDCHRQVGNAAKLSGIDKVLTVGTLSQLISSA---SGHGEHFHDKSALTARLAALLSQ 402

Query: 444 GDV--VVVKSSNSCGFYRLINLLLEE 467
             V  V++K S S     ++  L E+
Sbjct: 403 HQVITVLIKGSRSAAMESVVQALQEK 428


>gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 462

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 29/471 (6%)

Query: 1   MN-PLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  L T  +  + +     I   P    + +S DSRS+ P   FFAI+G   DGH+F+ 
Sbjct: 1   MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A   GA   VV   +  S     +P   V D   AL   A   R +    +IA+ GS G
Sbjct: 60  AASDAGAAAAVVTHFVPVS-----LPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114

Query: 119 KTTTKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTTT +M+   +    +        G+ NN +GV L L ++  +     FE+GM+H+GE+
Sbjct: 115 KTTTTQMVLSIIKERFQKGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEM 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R L   + P I  +T     H    + +EE A    E+F  L + G   +N  D F    
Sbjct: 175 RPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEW 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +   G   + +FG + ++D    +     E +   +      +++     G H   N
Sbjct: 235 RKMA---GNNRVVTFG-TPDSDVYACEV----EGTAFRLVTPIGQIDIELKVPGKHNIVN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++  +  D+    K L  F     RG+            +ID+SYNANP SM A
Sbjct: 287 AVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTL---DDGSVVIDDSYNANPDSMNA 343

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+++LS+        +I V GDM E+G  S  FH +L E +    I + +  G  +L   
Sbjct: 344 AVNMLSEYQLP----KIFVAGDMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAV 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLL 465
           +         + ET + L   ++  +V G   V+ K+SN    ++L + L+
Sbjct: 400 EGYGEGAR--HFETQEELLAALKEEMVKGPHAVLFKASNFMKLFKLADELV 448


>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
 gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
          Length = 449

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 193/461 (41%), Gaps = 19/461 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++     G  +G      V  +  D+R       + AIKG  +DGH ++  A++ GA 
Sbjct: 7   LSEIASICNGSLLG--EDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETALKNGAL 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+   D          P+  VDD   A   +A   R      ++AITGS GKTT KE L
Sbjct: 65  AVLSQQDSQVR------PLVLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKTTIKEWL 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L+   K      + NN IGVPLTL  +  +    + E G S +GEI  L  +  P I
Sbjct: 119 SQCLAERVKVLKTEKNNNNQIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQITTPDI 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+I+  + +H   F  IE IA  K  +  GL   G   LN+DD +F+        L  + 
Sbjct: 179 AIISNASGSHYEGFGSIEGIAKEKGALLTGLTAEGVAILNHDDPWFDYWVG---LLDKRA 235

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             SFG    AD   ++ +  S+ S   +  QG+   +     G H   N +  L  +  L
Sbjct: 236 CVSFGFGSGADLVAKQVELFSQSSKSILCYQGEEYVLHLAVPGKHQVANAMAVLLALLNL 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               ++A              KR           ++++ YNA+P S++AAI VL      
Sbjct: 296 GVTFESA---CESLSRPLVIDKRLEFQYLNSQALVLNDCYNASPKSVEAAIDVLMS---Q 349

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVH 425
            +G++  VLG + E+GEL +  H  L E  +   ++ +   G        A   R     
Sbjct: 350 SQGQKWLVLGALGELGELEEKIHQQLGEYAAFAGVTGLISVGPIAAIAAKAYEERGGVAV 409

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           Y E       FI+    +   ++VK S S    ++I +L  
Sbjct: 410 YCENNLQAAEFIKPLGKEN-AILVKGSRSAQMEQIIKVLEN 449


>gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 466

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 200/453 (44%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     + F A+KG  +D HDF+      G  + +V   +      +
Sbjct: 32  IPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPL-----DV 86

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R + ++  +IA+TGS GKTT KEML   LS +  T    
Sbjct: 87  DIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  F + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A     I +FG     D   
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEIHKAAQA---HRISTFGV--GGDIYA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   + +   +     +  V     G H  QN    +     L   ++  ++ L   
Sbjct: 262 TDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFALALGIGLEDIVQGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +    +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQ----KSPYLFIDDTYNANPNSMRAAAQVLLQ----QQGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  V   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGHDLAQLPLDHIIAVGQFASAALEGADSHSNKVKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 201/465 (43%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   + + + G      P+     + G+SIDSR+I     +  I G  +DG  FI     
Sbjct: 5   SLDQISKMLGGEI--SDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQN 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+   +++ +      S++IP   VDD   AL  LA A R +    IIAITGS GKTT+
Sbjct: 63  AGSPAFLIDKNFKIP-KSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTS 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ++   LS   K     G+ NN IG+PLT+     D D G+ E+G    GEI  LT++ 
Sbjct: 122 KNIIHSVLSEKYKVEKTHGNLNNEIGLPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+IT I  AHL      E IA AK EI EGL+  G    N DD   + +   S+ +
Sbjct: 182 RPDMAMITNIGDAHLLKLKTREGIAKAKLEILEGLKDDGIFLYNGDDEILKKVLP-SYDI 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             KTI SFG     DF++   +  S  +        K        +G H   N  + + I
Sbjct: 241 KQKTI-SFGMGDKVDFKVEAREYTSTSTNFSY----KDENYSVPLLGSHQVYNGALAVLI 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     D     LS       R +       +  F ++D++Y +NP S+K  + +   
Sbjct: 296 GKLFDLSYDQIKVGLSKSSNNANRNELIE----RDGFDILDDAYKSNPQSLKQGLELAGF 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  +    +I VLGDM E+G+   + H      +    I++    G     +  A   + 
Sbjct: 352 LDGYLN--KIVVLGDMLELGDDELNLHYKSGLDIDPKKINYCLFFGPLCKEMYRASLENF 409

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 Y E  + L   ++  +    +V VK S       +I  +
Sbjct: 410 PQDRSFYFENKNDLIDKLKLLITKSTLVFVKGSRGLHMEEVIEAI 454


>gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 459

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 200/465 (43%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   + + + G      P+     + G+SIDSR+I     +  I G  +DG  FI     
Sbjct: 5   SLDQISKMLGGEI--SDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQN 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+   +++ +      S++IP   VDD   AL  LA A R      IIAITGS GKTT+
Sbjct: 63  AGSPAFLIDKNFKIP-KSINIPYIIVDDTQKALRDLARAYRKELDIKIIAITGSNGKTTS 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ++   LS   K     G+ NN IGVPLT+     D D G+ E+G    GEI  LT++ 
Sbjct: 122 KNIIHSVLSEKYKVEKTHGNLNNEIGVPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+IT I  AHL      E IA AK EI EGL+  G    N DD   + +   S+ +
Sbjct: 182 RPDMAMITNIGDAHLLKLKTREGIAKAKLEILEGLKDDGIFLYNGDDEILKKVLP-SYEI 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             KTI SFG     DF++   +  S  +        K        +G H   N  + + I
Sbjct: 241 KQKTI-SFGMGDKVDFKVEAKEYTSTSTNFSY----KDENYSVPLLGSHQVYNGALAVLI 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     D     LS       R +       +  F ++D++Y +NP S+K  + +   
Sbjct: 296 GKLFDLSYDQIKVGLSKSSNNANRNELIE----RDGFDILDDAYKSNPQSLKQGLELAGF 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  +    +I VLGDM E+G+   + H      +    I++    G     +  A   + 
Sbjct: 352 LDGYLN--KIVVLGDMLELGDDELNLHYKSGLDIDPKKINYCLFFGPLCKEMYRASLENF 409

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 Y E  + L   ++  +    +V VK S       +I  +
Sbjct: 410 PQDRSFYFENKNDLIDKLKLLITKSTLVFVKGSRGLHMEEVIEAI 454


>gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
          Length = 480

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 127/486 (26%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L +AI            + G    DSR ++  + F A+ G + DGH F+    ++
Sbjct: 1   MTLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARR 58

Query: 64  GAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107
           G  + +V+ D           +     + V  V D   AL +LA A   + +        
Sbjct: 59  GGKVAIVSHDRTEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTG 118

Query: 108 --ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  ++ + 
Sbjct: 119 KLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYLVL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G   L
Sbjct: 179 EMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSGMAIL 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   KN   ++   +   + +    +     S  V 
Sbjct: 239 NADDPRVEAMSGRTSG----RLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGSAPVQ 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N +    I  +           LS   P      R           LID+
Sbjct: 295 LQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEH--RMNLVHLADGVDLIDD 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   IS +
Sbjct: 353 AYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVL 410

Query: 405 WLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G    H+ +   AL R    H           +Q  +  GD+++VK S+  G ++L 
Sbjct: 411 LTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLA 470

Query: 462 NLLLEE 467
             + E 
Sbjct: 471 QEIEER 476


>gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
 gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
          Length = 470

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 195/465 (41%), Gaps = 18/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +       I G S+          +S DSRS  P + F AIKG  +D HDF+    ++
Sbjct: 3   MLSLRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               V+V      +  + ++P   V D   AL  LA   R + +  ++A+TGS GKTT K
Sbjct: 63  NVAAVLVAR----TPENWNVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHRLAVVELGMNHPGETELLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +AV+      H    + +E +A   A +   L   GT     DD++  + +  + 
Sbjct: 179 LAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGTAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F  +          K   +   + +      ++V    +G H A N L   
Sbjct: 239 G---NRIIDFALNSAERTTEAAVKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +D   + L  F   +GR +  + AL      T+ID++YNANP SM+AAI V
Sbjct: 296 SAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +      R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LASRASP----RVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                H+   +  L   +Q +        +VK S      R+++ 
Sbjct: 412 AG--AHHVADVGALVAQLQQAGFGATATFLVKGSRFMQMERVVDA 454


>gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 420

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 118/428 (27%), Positives = 196/428 (45%), Gaps = 16/428 (3%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
            + G H DGH+ +  A+ K A                 +    VDD L AL +L+   R 
Sbjct: 1   PLPGNHIDGHEHVAAALSKEAAAAFWKRGYPNPPEDAVL--IFVDDPLKALQRLSRQYRE 58

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +  A II ITGS GKTTTK+++   L +  + +   G+ NNHIG+PLTL ++  D +  +
Sbjct: 59  QCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNHIGLPLTLLQIGEDTEVAV 118

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+GMS  GEI  L+ L +P +A+IT I  AHL      EEIA AK EI  GL+  G   
Sbjct: 119 IEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIARAKTEILGGLQDGGLFI 178

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N D+   + +  +          SFG+    +      +  ++ S    +LQ    E  
Sbjct: 179 SNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIGNDGSSF--RLQDSDTEFY 236

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L  +     L    +   +        +  G R      +  FT++++
Sbjct: 237 IPLLGLHNVMNALAAVTAGRELEVSDEKIAQG---LRDVQLSGMRIEKRKAESGFTVLND 293

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---- 400
           +YNA+PA+ KA +S++ Q+  +    +  VL DM E+GEL + FH ++  + +       
Sbjct: 294 AYNASPAATKAVLSLMKQLKGY--RHKYVVLADMLELGELEEQFHREIGGIAANLAEQGE 351

Query: 401 ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +S ++  G     + +        ++ ++ E    +   ++  +   DVV+VK+S     
Sbjct: 352 LSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKEVIHPEDVVLVKASRGMKL 411

Query: 458 YRLINLLL 465
             ++N LL
Sbjct: 412 EDVVNFLL 419


>gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
 gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
          Length = 490

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 129/493 (26%), Positives = 191/493 (38%), Gaps = 34/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ + + G   G      V  G+  D+R + P   F A+ G   DGHDF   
Sbjct: 1   MITL-TLAEIAEIVGGRLHGTDGSPVVKAGVEFDTRKLLPGGLFLALPGERVDGHDFAAA 59

Query: 60  AVQ---------KGAGLVVVNTDMVASIGSLSIPVFGVDD-------VLGALNKLAVAAR 103
           AV          +      V    VA             D       VL AL KLA    
Sbjct: 60  AVAAGAAGVLAGREVPAPSVIAPPVAPADEHEGAYVLSGDSDGSGAAVLAALGKLARHVT 119

Query: 104 LRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            R      T++ +TGS GKT+TK+++   LS    T A  GS+NN +G P T  R   D 
Sbjct: 120 DRLTAGGLTVVGVTGSSGKTSTKDLIAQVLSPTGATIAPPGSFNNELGHPWTALRADEDT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + EL     G I  L  +  P I  +  +  AHL  F   E +A  K E+ E L + 
Sbjct: 180 GYLVLELSARGPGHIADLCAVAPPRIGAVLNVGTAHLGEFGSREGVARTKGELVEALPED 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
           G   LN DD     +  ++ A     +   G+   A  +        + +    +     
Sbjct: 240 GVAVLNADDPLVLAMAERTKA----KVVLVGEHSRAQVRAVDIVLDEQARPGFTLLTPHG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  V     G H   N L    +   L A        L    P      R          
Sbjct: 296 SARVQLAVHGPHQVGNALTAAAVALELGATPQQVADRLGSAKPISAH--RMEVVDRADGV 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPH--GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           T+++++YNANP S+KAA+  L+ IS       R  AVLG M E+G  S   H ++  +  
Sbjct: 354 TVVNDAYNANPESVKAALKSLATISRSTTPARRSWAVLGPMAELGADSVRAHDEIGRLAV 413

Query: 398 LYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             +++ + + G    A+                   +      ++  +  GDVV+VK+SN
Sbjct: 414 RLDVNRLVVIGDDARAMHQGAHLEGSWGEESILVPDVAAAIELLRDEVRPGDVVLVKASN 473

Query: 454 SCGFYRLINLLLE 466
           S G +R+   LLE
Sbjct: 474 SYGLWRVAEALLE 486


>gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 433

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 139/462 (30%), Positives = 221/462 (47%), Gaps = 29/462 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + ++G  + I     V   +IDSRS      F  +KG + DGH +I  A++K 
Sbjct: 1   MRLTDLAKVVEGKILNIEEDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYIEDALKKW 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +   +    +    G        V D   AL K+A+  R     T++ ITGS GKT+TKE
Sbjct: 60  SVGYLTEKPLNFKNG------ILVKDTYQALKKIAIYKRKSID-TVVGITGSSGKTSTKE 112

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+  KTYA  G+YNN IGVPLTLA  P +    I E+G   +G+I +L ++V P
Sbjct: 113 LLNFVLSNFYKTYATSGNYNNEIGVPLTLANTPENTHIAIIEMGAGKVGDIDYLNNIVNP 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V+ ++  AH+  F   E I   K EIF     +    L +D       K K     +
Sbjct: 173 DIGVLVSVGHAHVEKFGSFENIIKGKGEIFN---TSHYHVLPFD--LLNYYKDK-----L 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   +FG+  N   ++   K   E +  +V  + + +++        + +N+    G++ 
Sbjct: 223 KKFITFGEEGN--IKVYDIKIIPEGTTGKVAYKNQVLDLTIPIFNKGIFKNIGAVAGVLY 280

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D   ++K L  F+  +GRGK  +     G  T+ID+SYNANP S+K AI  L++I 
Sbjct: 281 HLGLDPIESLKVLKEFNQIQGRGKIIKI----GNLTIIDDSYNANPLSVKNAIETLNEIP 336

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 ++ VLGDM E+GE S+  H  +A+ +   +I +V+L G     +K  L    +V
Sbjct: 337 TV----KVLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFLYGEETKYIKQELEGKKYV 392

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +++  + +   ++        V+VK S       +I  L  
Sbjct: 393 LHTDKKE-IANQLKKLENSSPTVLVKGSRGMKMEEVIEYLKN 433


>gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 436

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 198/450 (44%), Gaps = 22/450 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G   
Sbjct: 4   ENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                VDD L AL  LA A R      +  ITGS GKTT KEML   L          A 
Sbjct: 63  ---LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI+ GL   G   +  +D+   + K  +  L      +FG     D 
Sbjct: 180 GFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNT---CTFGVDSG-DV 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +             ++    +   VV    G H   N      +       ++   + L 
Sbjct: 236 RAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQ 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMKAA+ VL+++       RI V+GDM
Sbjct: 296 GFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMPAP----RIFVMGDM 348

Query: 379 CEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE  + + H ++        I   +  G + +   +         +    D L   +
Sbjct: 349 GELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQVL 406

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              L +   V+VK S       ++  L ++
Sbjct: 407 SHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK678]
          Length = 456

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYTALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrospira platensis str. Paraca]
          Length = 465

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 216/476 (45%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   I G         F V GI+ D+R++   E F A+ G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   VV+ +   S      P+  V D L A   LA + R R    +I +TGSV
Sbjct: 61  AAAIAKGALCAVVSREFAVSHPEF--PLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+     L +
Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDN---RRLMS 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +   T  ++G             Q        ++++G  +++     G H A N L
Sbjct: 236 TATQVWAGTTITYGLEGG-------ILQGELLGHETIRVEG--IDLPLPLPGSHNASNFL 286

Query: 298 MTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
             L ++  +       +     +S     +    R +         L+DE+YNA   S  
Sbjct: 287 AALAVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLESTL 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+ +L++   +   R IAVLG M E+GE S  FH  +       N+  +++    +   
Sbjct: 347 AALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFIL-ADLAEA 402

Query: 415 KDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +     ++ V + +  D         +   + + L  GD V+ K+SNS G  R++ 
Sbjct: 403 QAMAEGAVGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458


>gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 466

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 199/453 (43%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +      +
Sbjct: 32  IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL-----DV 86

Query: 82  SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R + S+  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 87  DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G E I  AK+EI+  +   G   +   D F   +   + A     I +FG     D   
Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKA---HRISTFGV--GGDVYA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   + +   +     S  V     G H  QN    +     +   ++  ++ L   
Sbjct: 262 TDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +    +  +  ID++YNANP SM+AA  VL Q     +G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQ----KSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGVKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G    A  +     S  V   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAAFEGADSHSNKVKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
 gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
          Length = 425

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 211/437 (48%), Gaps = 29/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I     FFA+KG +++G+++   A++KGA   +V+ +  A+          V 
Sbjct: 16  VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYATSDKT----ILVK 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L KLA   R    A +I +TGS GKTTTKE++   LSS  KT A IG+ NNHIGV
Sbjct: 72  DVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +H  EI FL  L +P    IT    AHL  F  +E +   
Sbjct: 132 PLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNFGKAHLEGFGSVEGVIEG 191

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++ L     +IFLN DD     ++ K     IK  Y F  +K   F+++       
Sbjct: 192 KSELYDYLLANQKSIFLNADDP----IQHKKLGHYIKK-YGFTTAKKEYFKIKFLISDP- 245

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                V L  + +E+    IG +   N    + +      +++    A+  + P+  R +
Sbjct: 246 ----YVSLSVEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDIKTAIESYIPQNNRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       +I ++YNANP SMK A+   + +S      +IA LGDM E+G  S   
Sbjct: 302 IIES----NGTRIILDAYNANPTSMKVALENFNSLSGEP---KIAFLGDMFELGATSNEE 354

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDVV 447
           H ++A++ S  +IS V+L G +    K  L +       +  + L L++    L     +
Sbjct: 355 HQNIADLTSSLDISEVFLVGDNFYRTKTPLKK------FKNYEALALYLADVELPSNSTI 408

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      RL+ LL
Sbjct: 409 LIKGSRGMALERLLELL 425


>gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC
           6.3.2.10) [Burkholderia rhizoxinica HKI 454]
          Length = 476

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 205/476 (43%), Gaps = 32/476 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++        + +S DSRS  P   F A+KG  +D HDF+    ++
Sbjct: 3   MLTLREAAALIDGATVLGDDTVAFDQVSTDSRSCGPASLFVALKGERFDAHDFLPDLARR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   V+V+     S G   +P   V D   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 63  GVAAVLVSR----SPGDWRVPAIRVADTRAALGALAAGWRRRFALPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++     +  +  G+ NN IG+PLTL ++       + ELGM+  GE + L  
Sbjct: 119 EMIASIFAAAVGHAQRLSTQGNLNNVIGMPLTLLQLAPQHRLAVVELGMNRPGETQQLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA++      H    + +E +A   A +   L   GT     DD +  + +    
Sbjct: 179 IAGPTIALVNNAQREHQEFMATVEAVALEHASVIHALPPDGTAVFPADDPYAGIWRV--- 235

Query: 241 ALGIKTIYSF-----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           A     I  F     G + +A  Q       ++   + ++ +  ++EV     G H A+N
Sbjct: 236 AATDNRIVDFALRRPGANSDAAVQGT----TTDTGALRIETRAGALEVSLRAPGEHNARN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMK 354
            L            +D   + L  F P  GR + +   A+     T+ID++YNANP SM+
Sbjct: 292 ALAATAAALAAGVGLDAIRRGLETFEPVNGRLQAKLAQAMPWAGATVIDDTYNANPDSMR 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+         R+ V+GDM E+G+   +FH ++        +  ++  G      
Sbjct: 352 AAIDVLTMRQAP----RVLVMGDMGEVGDNGPAFHREVGAYARERGLDALYALGDASRDA 407

Query: 415 KDALPRSIHVHYSETMDGLF------LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             A     H H+ ++ + L         + S    G  ++VK S      R++  L
Sbjct: 408 CTAF--GPHAHHFDSAEALICALLRQDAVASERAAGATILVKGSRFMRMERVVQAL 461


>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
 gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
          Length = 457

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 211/461 (45%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L  A++G       +    G+  D+R       F A++GP +D H+ +  A    
Sbjct: 4   MTGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV--AADLP 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +++V       +  +  P   V D   AL +LA   R RS+A +IA+TGS GKTTTKE
Sbjct: 62  AAVLLVER-----VLDVPHPQVVVADTGEALGRLAQHWRRRSRARVIALTGSNGKTTTKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L  +   +A  G+ NN IGVPLTL  MP D D+ + E+G +H GEI  +     P
Sbjct: 117 MLRCILEGVGSVHATQGNLNNEIGVPLTLLAMPEDTDYAVIEMGANHAGEIGRMARWTEP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALG 243
            +A+IT    AHL  F  +E +A AKAEIF GL  + GT  +N DD F +   + +    
Sbjct: 177 MVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFADYWLSLNEHHH 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +     G  +     +    Q  ++  + +   G+ +       G H+A N +      
Sbjct: 237 CQRFSLEGGGE-----IEGVWQAPDRLRLTILGAGRDL--RLASPGRHVAANAIAAAAAA 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + +   +D     L+ + P +G   R +   +     L D++YNANP S++A + VL+ +
Sbjct: 290 NAVGVAIDAIANGLAGWTPVQG---RLQELWHVSGARLWDDTYNANPDSLRAGLEVLAAM 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRRI VLG M E+G  +   H +   +     + +    G       +A      
Sbjct: 347 P----GRRILVLGAMGELGAETPVLHRETGALARAMGVDYCLALGEAARDSAEAFGEGGE 402

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +    D L   +++ L D   V++K S S    R+I  L
Sbjct: 403 --WFADHDALRTRLEALLEDETTVLIKGSRSQHMERIIEGL 441


>gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
          Length = 483

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/486 (26%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L +AI            + G    DSR ++  + F A+ G + DGH F+    ++
Sbjct: 4   MTLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARR 61

Query: 64  GAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107
           G  + +V+ D           +     + V  V D   AL +LA A   + +        
Sbjct: 62  GGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTG 121

Query: 108 --ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  ++ + 
Sbjct: 122 KLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYLVL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G   L
Sbjct: 182 EMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSGMAIL 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   KN   ++   +   + +    +     S  V 
Sbjct: 242 NADDPRVEAMSGRTSG----RLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGSAPVQ 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N +    I  +           LS   P      R           LID+
Sbjct: 298 LQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEH--RMNLVHLADGVDLIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   IS +
Sbjct: 356 AYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVL 413

Query: 405 WLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G    H+ +   AL R    H           +Q  +  GD+++VK S+  G ++L 
Sbjct: 414 LTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLA 473

Query: 462 NLLLEE 467
             + E 
Sbjct: 474 QEIEER 479


>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
 gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
          Length = 459

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 211/467 (45%), Gaps = 19/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  ++++A+ G  +    +     IS D+R I  +  F A+KG  ++G+++   A QKGA
Sbjct: 5   SLEEIVKAVSGEILIKGNELGWEYISTDTRKIEEKAIFIALKGERFNGNEYTASASQKGA 64

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            + +V+              V  V D   AL  LA   + + +  ++AITGS GKT+TK+
Sbjct: 65  FICIVDEVHFKKEEIKDYTTVIKVKDTSEALLDLAKYYKSKLEVKVVAITGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +  K +   G++NN IG+PL + ++    D  + E+GMS+ GEI  +     P
Sbjct: 125 LTASVLGAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEIHKMAKTALP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  +H+ N    + I  AK EI +   +   + +N +D     LK + + L I
Sbjct: 185 DIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNLKEEKYKL-I 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT    G  KN +          +    ++   G  +++     G H   N L+ +    
Sbjct: 244 KT----GLGKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLLAIACGR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I     +     +        R            F ++D+SYNA+P SMKAAI VL  I 
Sbjct: 300 IFKMSFEEIKNGILDLQTTSMRLDMVE----GKKFNIVDDSYNASPDSMKAAIEVLCNIK 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                R+ AVLG M E+GE +   H ++ +     +++ + L  F    ++  L  S   
Sbjct: 356 SK---RKFAVLGTMKELGEEAYRAHREIGKYAGEKSVNLIVLGSFSKAYIEGYLEGSENK 412

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               ++  ++  + +  ++  +L   DVV+ K+S S  F  ++    
Sbjct: 413 NNRGNILEAKDKEEVINYLDINLNSEDVVLFKASRSEHFEEMVESFK 459


>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
 gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
          Length = 470

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/478 (26%), Positives = 200/478 (41%), Gaps = 25/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +  +    G   P   V+G + IDSR  AP   F A++G   DGHDF  
Sbjct: 1   MIAL-TLDRIAKITRSRLRGSAQPTDTVDGPVVIDSREAAPGSLFVALRGSRVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
            AV+ GA  V+ +      + +  + V G DD + A       A       A II +TGS
Sbjct: 60  AAVRAGATAVLCSR----PVDAPHLLVDGGDDAVVAALAKLARAVVAELPDADIIGVTGS 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTK++L   L  I  T A  GS+NN IG PLT+ R      F   E+    +G I 
Sbjct: 116 SGKTTTKDLLAQTLQRIGPTVAPPGSFNNEIGHPLTVLRADQTTRFIALEVAARGVGHIA 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFE 233
            L  +  P I V+  +  AH+  F   + IA AK E+ E L      G   LN DD    
Sbjct: 176 HLCQIAPPRIGVVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDDAVI 235

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHM 292
            + +++ A     + S+G + +AD +               + +   +  V    +G H 
Sbjct: 236 GMASRTAA----RVVSYGLAPDADVRAEGIALDERGRPRFTLAIGEDTAPVSLRLVGTHQ 291

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    ++  L   V     ALS   P      R          T+++++YNANP S
Sbjct: 292 VHNALAVAAVLRELGEPVTAIAAALSEAGPVSRW--RMEVTERPDGVTIVNDAYNANPES 349

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+  L+ ++     R  AVLG M E+G   ++ H  +  +++   +  +   G    
Sbjct: 350 MSAALRTLATLAS--GRRAFAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITVGEQAA 407

Query: 413 ALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++ D                 +      ++  L   D+V++K S   G  ++   L++
Sbjct: 408 SIADGAASVADWKGETVTVADVTEAVAVLKERLRPKDIVMLKGSRVAGLEQVAEQLID 465


>gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
 gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
          Length = 462

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 29/471 (6%)

Query: 1   MN-PLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  L T  +  + +     I   P    + +S DSRS+ P   FFAI+G   DGH+F+ 
Sbjct: 1   MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A   GA   VV   +  S     +P   V D   AL   A   R +    +IA+ GS G
Sbjct: 60  AASDAGAAAAVVTHFVPVS-----LPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114

Query: 119 KTTTKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTTT +M+   +    +        G+ NN +GV L L ++  +     FE+GM+H+GE+
Sbjct: 115 KTTTTQMVLSIIKERFQEGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEM 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R L   + P I  +T     H    + +EE A    E+F  L + G   +N  D F    
Sbjct: 175 RPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEW 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +   G   + +FG + ++D    +     E +   +      +++     G H   N
Sbjct: 235 RKMA---GNNRVVTFG-TPDSDVYACEV----EGTAFRLVTPIGQIDIELKVPGKHNIVN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++  +  D+    K L  F     RG+            +ID+SYNANP SM A
Sbjct: 287 AVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTL---DDGSVVIDDSYNANPDSMNA 343

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+++LS+        +I V GDM E+G  S  FH +L E +    I + +  G  +L   
Sbjct: 344 AVNMLSEYQLP----KIFVAGDMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAV 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLL 465
           +         + ET + L   ++  +V G   V+ K+SN    ++L + L+
Sbjct: 400 EGYGEGAR--HFETQEELLAALKEEMVKGPHAVLFKASNFMKLFKLADELV 448


>gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 454

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 209/468 (44%), Gaps = 36/468 (7%)

Query: 10  LLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + + +    S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + GA   
Sbjct: 1   MARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT 59

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                +         P   V++ L A  KLA     + +  +IA+TGS GKT+TK+M+  
Sbjct: 60  FSERAISGR------PYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEA 113

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ + RPHIAV
Sbjct: 114 VLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARPHIAV 173

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIK 245
           +T I  AHL+ F   E+IA  K +I +G++  G +    D   D +             +
Sbjct: 174 LTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYL---------PDSQ 224

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG  +     +   K+  +    +  +  + +       G + A N ++   +  +
Sbjct: 225 MVIRFGDHQE--LVVEDIKERKDSLTFKTNVLPRPVT--IPLTGKYNATNAMIAAYVGRL 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +  I+A       +    R           L+ + YNANP +M+  +   + I  
Sbjct: 281 LAVPDEDIIEA---LEAVKLTRHRTEWIKAANGADLLADVYNANPTAMRLILETFAAIPA 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  G++IAVL DM E+G  S + H  L   L    I  +   G  + AL     +   S 
Sbjct: 338 NLNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQALAKLASQDYPSG 397

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            V +       +  + +  ++ + L   D +++K S+S     +++ L
Sbjct: 398 RVSFFKKNNQEDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRL 445


>gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 460

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 212/463 (45%), Gaps = 15/463 (3%)

Query: 10  LLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + QA+ G  +G      V+G +  DSR       + A  G   DGH+FI  A+  GA   
Sbjct: 8   IAQAVNGKLLGA--DVVVSGSVETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCA 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTTTKEMLT 127
           +V    + +     I V      LG L K+     R      I+ ITGSVGKTTTK++  
Sbjct: 66  IVTNPSIGNPEHTRILVEDATYALGLLAKVHIERLRATGDLRIVGITGSVGKTTTKDLTA 125

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+    T A + S+NN +G+PLT  +   +  + + E+G S +G + +LT LV P + 
Sbjct: 126 GILAKFAPTVAPVASFNNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLTGLVSPDLG 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V  ++  AHL  F  +  +A AKAE+ EG+++ G + LN DD     ++  +H      +
Sbjct: 186 VELSVGRAHLGGFGSVAGLARAKAELVEGVKENGLVILNLDDPNVAAMETVAHT----PV 241

Query: 248 YSFGK--SKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             F    ++ AD   R         +  E    G+ + V    +G H   N L  + I  
Sbjct: 242 VYFSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAAISICQ 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               ++   + AL+               +     T ID+SYNANP SMKA ++VL++  
Sbjct: 302 GFGLELPEIVAALNGMKAASPHRM---SIVESRGATFIDDSYNANPDSMKAGLAVLAKQG 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            H   R IAVLG+M E+GE S   H ++ E++    +  +   G     +   L      
Sbjct: 359 EHANQR-IAVLGEMMELGETSAQLHQEVGEMVVATQVDLLITLGEGAKEIAVPLTEKTTH 417

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++ ++      ++  +V GDVV +K SN  G +++ +  + E
Sbjct: 418 FHAGSVAEAVKLLEEKVVAGDVVFLKGSNGSGVWKVADKFVAE 460


>gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC
           13032]
 gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC
           13032]
          Length = 514

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/490 (26%), Positives = 208/490 (42%), Gaps = 34/490 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++   + G   G   +  +  + +  DSRS+ P   F A+ G   DGHDF   A++
Sbjct: 4   MTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVAARL-- 104
           KGA  V+   ++   + ++ +P   + +                V+ AL++LA       
Sbjct: 64  KGAVAVLAAREV--DVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSRLARHVVDIC 121

Query: 105 --RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
               +  ++AITGS GKT+TK+ +   L     T A  GS+NN +G+P T  R   D  +
Sbjct: 122 VAGHQLNVVAITGSAGKTSTKDFIATVLDQDGPTVAPPGSFNNELGLPHTALRCTTDTKY 181

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--- 219
            + E+    +G I+ LT +  P IA +  +  AHL  F   E IA AK EI E L     
Sbjct: 182 LVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKT 241

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278
            G   LN DD F   +  ++ A  +      G++K +D+        +  ++   +  + 
Sbjct: 242 GGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYWATSISLDAVARASFTLNTKD 301

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L    I        +  +  L           R         
Sbjct: 302 GSWPVTLQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAH--RMDVKTRADG 359

Query: 339 FTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            T+I++SYNANP SM+A I+ L+   S   E    AVLG M E+G+ +   H +L   L+
Sbjct: 360 VTIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELA 419

Query: 398 LYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            YN+  +   G +       + A    +  H    +D     +   +   DVV+VK+SN+
Sbjct: 420 KYNVQELVAVGENPNCAALAESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLVKASNA 479

Query: 455 CGFYRLINLL 464
              +R+   L
Sbjct: 480 DRLWRVAEAL 489


>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
 gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
          Length = 477

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/481 (24%), Positives = 209/481 (43%), Gaps = 33/481 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +  ++L+A+ G  +       +  +  DSR +     F  + G + DGH ++  A++K
Sbjct: 7   LLSLEEILEAVNGVHVLGNSPLCIKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQAIEK 66

Query: 64  GAGLVVVNTDMVASIGSLSI---------PVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           GA +V ++     + G+  +             V++ L AL K A     +    I I +
Sbjct: 67  GASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPHLIKIGV 126

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L   LS   K  +  G+ N+  G+PL++  +  + + G+FE+GM+   
Sbjct: 127 TGSSGKTTTKEILVSILSQKYKVISNKGNLNSETGLPLSVFNIRAEHECGVFEMGMNREN 186

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  +++P  AV+T I  AH+      E IA  KA+IF      GT  +  DD F +
Sbjct: 187 EIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYFGGFGTGVIPVDDEFSD 246

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK +        +  +G   ++   +       + +   +      +E +    G +  
Sbjct: 247 FLKNEIDG----KVVFYGNDTDSVKYICD--MGLKGTKFSID----GIETILPLPGKYNY 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           ++ L  + +  +L          +S   P  GR +     L+   F ++ + YNANP SM
Sbjct: 297 KDALGAIALAQVLGLSSRQISDGISSLKPLSGRSE----ILDGKNFLIMQDCYNANPDSM 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + AI  +  +    + ++I VLGDM E+G  S+S H     +    ++  V   G  + A
Sbjct: 353 EKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAHEKTGLLAVNSDVDLVIFIGTEMKA 412

Query: 414 LKDALPRSIHVHYS-------ETMDGLFLFIQSSLVD--GDVVVVKSSNSCGFYRLINLL 464
                  S   +         ++M+     I+  L      ++ +K S   G  R+  +L
Sbjct: 413 AFKKAKNSSEKNIIFIAGNSQDSMERAASEIKKVLHGSLNSIIFIKGSRGMGLERISKIL 472

Query: 465 L 465
           L
Sbjct: 473 L 473


>gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 458

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 203/470 (43%), Gaps = 23/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +     +         V  ++ D+R + P   F  + G   DGHDFI  A + 
Sbjct: 3   MQLSEIARMTGAKNETEQWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFINQAREN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +           PV  V D L A  +LA    L+    ++AITGS GKTTTK
Sbjct: 62  GAVATLWASARDDQPTDF--PVLLVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M    L S    +    ++NN IGVP T+  M  + +  + E+GM   G++  L+ +  
Sbjct: 120 DMTAAVLGSQYNIHKTQANFNNEIGVPQTILSMEANTEILVIEMGMDRPGQLHALSEIAM 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+  F   ++IA AK EI + L++ G +  + D+         +  +G
Sbjct: 180 PDVAAITMIGEAHIEFFKTRDKIADAKMEITDFLKEDGLLVYDGDEPLL------NERVG 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG +        + +    ++  ++      +      +G +   N L  + I 
Sbjct: 234 DLERETFGSATTNTLYPIQVRAGETKTQFKLNA-WPDVAFEIPMMGAYNVNNALAAILIG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   KAL+ F        R    +      ++ + YN+NP    AAI VL   
Sbjct: 293 QHYHIKPEVMSKALANFEVTR---NRTEWLVGTAGQRMLSDVYNSNPT---AAIEVLRNF 346

Query: 364 SP-HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
           S    +GRRIAVLGDM E+G  S+  H  LA VL    I  V+L G  +  L D L    
Sbjct: 347 SHFETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIY 406

Query: 420 RSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  +HY E      L   +  ++   D+VV+K+S+     +++  L  E
Sbjct: 407 PAEQLHYFEKTQQPELITALAETIQPSDLVVLKASHGLHLEKVVAALTTE 456


>gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 483

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/486 (26%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L +AI            + G    DSR ++  + F A+ G + DGH F+    ++
Sbjct: 4   MTLDALREAIGLEP--GENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARR 61

Query: 64  GAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107
           G  + +V+ D           +     + V  V D   AL +LA A   + +        
Sbjct: 62  GGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTG 121

Query: 108 --ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  ++ + 
Sbjct: 122 KLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYLVL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G   L
Sbjct: 182 EMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSGMAIL 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   KN   ++   +   + +    +     S  V 
Sbjct: 242 NADDPRVEAMSGRTSG----RLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGSAPVQ 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L    I  +           LS   P      R           LID+
Sbjct: 298 LQLLGAHHVTNALAAAAIAHVAGMTPAEIATVLSNATPVSEH--RMNLVHLADGVDLIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   IS +
Sbjct: 356 AYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVL 413

Query: 405 WLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G    H+ +   AL R    H           +Q  +  GD+++VK S+  G ++L 
Sbjct: 414 LTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLA 473

Query: 462 NLLLEE 467
             + E 
Sbjct: 474 QEIEER 479


>gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 483

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/486 (26%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L +AI            + G    DSR ++  + F A+ G + DGH F+    ++
Sbjct: 4   MTLDALREAIGLEP--GENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARR 61

Query: 64  GAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107
           G  + +V+ D           +     + V  V D   AL +LA A   + +        
Sbjct: 62  GGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTG 121

Query: 108 --ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  ++ + 
Sbjct: 122 KLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYLVL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G   L
Sbjct: 182 EMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSGMAIL 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   KN   ++   +   + +    +     S  V 
Sbjct: 242 NADDPRVEAMSGRTSG----RLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGSAPVQ 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N +    I  +           LS   P      R           LID+
Sbjct: 298 LQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEH--RMNLVHLADGVDLIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   IS +
Sbjct: 356 AYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVL 413

Query: 405 WLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G    H+ +   AL R    H           +Q  +  GD+++VK S+  G ++L 
Sbjct: 414 LTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLA 473

Query: 462 NLLLEE 467
             + E 
Sbjct: 474 QEIEER 479


>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 484

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 221/481 (45%), Gaps = 27/481 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T  ++ +A+ G  +       Q  V+G+   DSR I P   F A  G   DGH F
Sbjct: 16  MIAL-TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLF 74

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIA 112
              AV+ GA L++V  ++      L +P   V DV+ AL +LA       R   +  ++A
Sbjct: 75  APWAVEAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGELRMVA 129

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKTTTK +L   L +  +T + + S+NN +G PLT+ ++     F + E+G S L
Sbjct: 130 VTGSNGKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVTRSTRFLVAEMGASGL 189

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P + ++ T+  AH   F GIE     K E+ + L    T  LN DD   
Sbjct: 190 GEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRV 249

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYH 291
             +  K+ A     +  FG+   A  +       +  +   + L   S   V    +G H
Sbjct: 250 ASMSDKTQA----PVLWFGRDARAAVRATDIVASAAGTTFTLHLPDGSTRPVSFRVLGEH 305

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        L  D D  + AL      E         L     T+I+++YNA+P 
Sbjct: 306 HVTNALAAAAGAWALGVDGDAIVSALQTVQRAERWRMEV---LGGNGVTVINDAYNASPD 362

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM AA+  L+QI    E R +AVLG+M E+GE S+  H  +  +    NI  + + G   
Sbjct: 363 SMAAALRTLAQIRG-PEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPA 421

Query: 412 LALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             L  +A+ +        ++E        +   L DGD+V+VKSSNS G   L + L E+
Sbjct: 422 RRLHLEAIGQGSWDGESIFAEDAAEAREILDGILRDGDLVLVKSSNSAGLRFLGDELGEK 481

Query: 468 F 468
           +
Sbjct: 482 Y 482


>gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
 gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
          Length = 459

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 213/469 (45%), Gaps = 20/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   ++  + +Q +Q       P     N ++ D+RS+ P + F A++G ++DGH F+  
Sbjct: 1   MMRAFSLAEAVQWLQPDCHFDGPDKLTFNAVNTDTRSLLPGQLFVALRGENFDGHRFLQK 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA   VV+        ++ +P   V D L AL +LA   R  S AT+IAITGS GK
Sbjct: 61  AQEQGASAAVVD----CIDAAVDLPQLLVSDTLIALGELATRHRATSNATLIAITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT +EM    L  +       G+ NNHIGVPLTL  +  +  FG  ELG S L EI +  
Sbjct: 117 TTVREMTGAILQQMGPALITQGNLNNHIGVPLTLFGLAPEHRFGAIELGASGLNEIAYTV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V+P +A++T    AHL  F   + I  AK EI +G+   G + LN DD  F+    ++
Sbjct: 177 AMVKPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVADDGLVVLNRDDPAFDQWLVRA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLM 298
               + ++   G    AD+++           +++    G   ++     G H   N  M
Sbjct: 237 GRRRVASVSRAG-HAGADYKV----IAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAM 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L A  +     L      +G   R         +TLID+SYNANPAS+KAA++
Sbjct: 292 AAAAARELGATNEHIKAGLEQVLAVKG---RLHIQPLAQGWTLIDDSYNANPASIKAALA 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL++        RIAVLG M E+GE +   H ++A+      I  +   G          
Sbjct: 349 VLAKRPSP----RIAVLGAMAELGEQAAQLHREVAQYARDLGIERLLAVGPGCEGYGRGF 404

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             ++ +    + D     +  +      V+VK S S     +   +  +
Sbjct: 405 GATVEI--CASHDQAINAVLKNTQVPATVLVKGSRSSAMEIVAEGIKNK 451


>gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 489

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 171/476 (35%), Positives = 243/476 (51%), Gaps = 27/476 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW+  ++ +A  G + G       +G+ +DSR + P + F A+KG   DGH FI  A  
Sbjct: 25  ALWSADEIAEATGGVASG---DFQCSGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFA 81

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V+  +         P   V+D   AL+ LA AAR R +AT IA+TGSVGKT  
Sbjct: 82  AGAAAAIVDRPIDW-------PHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGV 134

Query: 123 KEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE +  AL  +S  + +  + SYNNH+GVPL++ARM     +G+FE+GM+H GEI  L  
Sbjct: 135 KEAIFSALDRASRGQAHRSVRSYNNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAPLAD 194

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VRP +AVITTIAPAH+ N   +E IA  KA+IF GL+  G   +  D   FE LKA + 
Sbjct: 195 HVRPDVAVITTIAPAHIENLGSLEAIADEKAQIFTGLKPGGAAIIPADSEQFERLKAHAE 254

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           A G + ++SFG++ +A  +L      +    S +  Q+    +       G H   N L 
Sbjct: 255 AAGAE-VFSFGRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLA 313

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  +  +  D+  A  AL      +GRG R+  A   G   LIDESYNANPASM+A ++
Sbjct: 314 VMACIYAVGGDLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLT 373

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---- 414
            L Q       RRIAVLG M E+GE S  FH  L E +    + +  L G  +  L    
Sbjct: 374 QLGQTPAS---RRIAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKM 430

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLL 465
                + L       +          ++   L  GD ++VK SN+ G  RL++  +
Sbjct: 431 GTAHANGLGNPPAFAHCAGPAEAIAALEEFGLNAGDAILVKGSNAVGLGRLVDHFV 486


>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Arthrospira platensis NIES-39]
          Length = 468

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 216/476 (45%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   I G         F V GI+ D+R++   E F A+ G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   VV+ +   S      P+  V D L A   LA + R R    +I +TGSV
Sbjct: 61  AAAIAKGALCAVVSREFAVSHPEF--PLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+     L +
Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDN---RRLMS 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +   T  ++G             Q        ++++G  +++     G H A N L
Sbjct: 236 TATQVWAGTTITYGLEGG-------ILQGELLGHETIRVEG--IDLPLPLPGSHNASNFL 286

Query: 298 MTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
             L ++  +       +     +S     +    R +         L+DE+YNA   S  
Sbjct: 287 AALAVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLESTL 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+ +L++   +   R IAVLG M E+GE S  FH  +       N+  +++    +   
Sbjct: 347 AALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFIL-ADLAEA 402

Query: 415 KDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +     ++ V + +  D         +   + + L  GD V+ K+SNS G  R++ 
Sbjct: 403 QAMAEGAMGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458


>gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Photobacterium profundum SS9]
 gi|46914748|emb|CAG21525.1| hypothetical
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Photobacterium profundum SS9]
          Length = 468

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 208/482 (43%), Gaps = 42/482 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      V  +S D+R+++    F A+KG  +D HDF  +A+  G  
Sbjct: 6   LAQLADVLDAELIG--SDITVANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMDNGVA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTT 122
            ++V+  +        +P   V D   AL  L    +           +A+TGS GKTT 
Sbjct: 64  ALLVSRHLPVE-----LPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS      A  G++NN IGVPLTL R+  + +F + ELG +H  EI + T+LV
Sbjct: 119 KEMVAEILSQKGNVLATAGNFNNDIGVPLTLLRLTPEHEFAVIELGANHQQEIAYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLK 236
           +P +A+I  +A AHL  F  +  +A AK EIFEGL          T  +N D +   +  
Sbjct: 179 KPQVALINNLAAAHLEGFGSLAGVAQAKGEIFEGLTAPLNGSGLSTAIINLDSNDVAMWL 238

Query: 237 AKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
                  +K   +F  +  +ADF        SE  +   +     S ++     G H   
Sbjct: 239 PFLAQHAVK---TFSLTDISADFSATDIFINSEGRACFTMCTPEGSTDITLTLAGTHNVS 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   + A ++     L      +G   R   +  +    LID++YNA+ AS+K
Sbjct: 296 NALAAAALAMAVGATLEQVKAGLEQVVNVKG---RVDVSHPREGLRLIDDTYNASVASVK 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI +L+  +    G+R  VLGDM E+GE S S H ++AE      +  V+  G     +
Sbjct: 353 AAIDLLASFT----GQRWFVLGDMAELGEDSASLHREVAEYAMTKGLDKVFTFGCASAVV 408

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVVKSSNSCGFYRLINLLL 465
            D         +      L   +Q+ L              V+ K + S     +I  L 
Sbjct: 409 SDL----NQGQHFADKSTLIEQLQAQLHPRNINQQHYQEVTVLAKGARSSRMEDVIAALQ 464

Query: 466 EE 467
           E+
Sbjct: 465 ED 466


>gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 144/503 (28%), Positives = 215/503 (42%), Gaps = 48/503 (9%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  D+ +   G    G  P+  V G +  DSR I     F A+ G + DGHDF   A+ +
Sbjct: 5   TLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQSAIDR 64

Query: 64  GAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAAR------------------L 104
           GA   +V  D+ V ++    +     D+   A N    +AR                   
Sbjct: 65  GAVGALVARDVGVPAVILPPVEQIEGDNSDLAANDPDGSARAVVAGMAKLAAHVATTLVD 124

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           + +  I  ITGS GKT+TK+++   L+   +T A  GS+NN IG+P T+ R   D DF +
Sbjct: 125 KHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTEDTDFLV 184

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    +G I  LTH+  P I V+  +  AHL  F   E IA AK E+ E L   G   
Sbjct: 185 AEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEALPADGIAI 244

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCS-EQSWMEVQLQG-KS 280
           LN DD     + +++ A     +  F      NA++           ++   +     + 
Sbjct: 245 LNADDELVAGMASRTKA----RVVCFSTDPRSNAEYVAEGITLDDVARASFTMHSPNSEP 300

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V     G H   N L T  +      D  T  +ALS  H       R          T
Sbjct: 301 QQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVN--RMDVNTRADGVT 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +I+++YNANP SM+A I+ L   +    G R IAVLG+M E+GE S   H  L   L+ Y
Sbjct: 359 VINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVEAHTALGNELARY 418

Query: 400 NISHVWLSGFHVLALK---DALPRSIHVHYSETMDGLFLFIQSSLV-------------D 443
            ++H+ + G           A  R I    +  ++     +   L              D
Sbjct: 419 RVTHLVVVGESAETAALLSRAAERGIESVSALDIEDATERVSEILRTVPLGEENWRDRPD 478

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
            DVV+VK+SN+ G +R+   LL+
Sbjct: 479 RDVVLVKASNAAGLWRVAERLLD 501


>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
 gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
          Length = 468

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 220/470 (46%), Gaps = 14/470 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A +G  +G  P   V G+S D+R+++P + F A+KG  +D HD +  A 
Sbjct: 7   TPQFTPDELAAATRGRWLGAPPSA-VAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +   P   V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSEAWAAAHPAPPRPALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     ++ +A AKAE++EGL   G   +N DD+    +  +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA---RMLKRGVA 242

Query: 242 LGIKTIYSF--GKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHG-IGYHMAQNML 297
            G + + +F  G+ +  D  + +    S E     + +  + + V   G +G H A+N  
Sbjct: 243 SG-RRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAA 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   +        + L+   P    G+R R         L+D+ YNANPASM AA+
Sbjct: 302 AAACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAAL 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALK 415
            VL  ++     R  AVLGDM E+G      H  L    +   ++ +   G      A  
Sbjct: 359 DVLRDLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEA 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                     ++E +D L  F++  L   DV++VK S      RL+  L 
Sbjct: 419 AGAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468


>gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
 gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
          Length = 406

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 195/420 (46%), Gaps = 19/420 (4%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           G  +DGHDFI  A  KGA   VVN      I  + IP F V   L AL K+A A R    
Sbjct: 2   GERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQFVVVSPLMALAKIAAAHRQEMS 57

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             IIA+TGS GKTT KEM+   L     ++A  G+ NNHIGVPL++  +     + +FEL
Sbjct: 58  CPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNLNNHIGVPLSMLALNKQHRYAVFEL 115

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G +H GEI     +V+P +++I  IAPAH+  F  I+ +A +K EI +GL  TG   +N 
Sbjct: 116 GANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPTGVAIVND 175

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHH 286
           DD++          +  K I  F     AD   +  +  +   +   + L    +E+   
Sbjct: 176 DDAYAHFW---DDLIADKKILRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQ 232

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L        +    +   + L+ F   +G   R      Q   T+ID++Y
Sbjct: 233 VPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKG---RMTMLSGQNQSTVIDDTY 289

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S+  A+ VLS       GR+I V GDM E+GE +   H ++        I  +  
Sbjct: 290 NANLRSVLTALEVLSGRP----GRKIFVFGDMGELGEWTTQHHREVGIAARQLGIDKLMS 345

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G H      A       H+  + + L   +++ L     V+VK S S     +++ L++
Sbjct: 346 CGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLTPDTTVLVKGSRSSAMENVVHRLVQ 403


>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
 gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
          Length = 468

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 147/480 (30%), Positives = 219/480 (45%), Gaps = 40/480 (8%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   + G     V   F V GI+ D+R++   E F A++G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           + A+ KGA   VVN +   S      P+  V D L A   LA + R R    II +TGSV
Sbjct: 61  VAAIAKGALCAVVNREFAVSHPEF--PLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+     L +
Sbjct: 179 LTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDN---RRLMS 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +   T  ++G             Q        +++ G  +E+     G H A N L
Sbjct: 236 TATQVWSGTTITYGLEGG-------ILQGELLGHETIRVAG--IELPLPLPGSHNASNFL 286

Query: 298 MTLGIVSIL------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             L ++  +        ++   +         +GR KRY  A       L+DE+YNA   
Sbjct: 287 AALAVLRAIAGWETSAEELYAPLSTGLSLQMPQGRAKRYHLAQ---DILLLDETYNAGLE 343

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S  AA+ +L++   +   R IAVLG M E+GE S  FH  +       N+  +++     
Sbjct: 344 STLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGLFILADLA 400

Query: 412 LALKDALPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            A   A+     V     +  L            + + L  GD V+ K+SNS G  R++ 
Sbjct: 401 EA--QAMAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458


>gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
 gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
          Length = 468

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 214/473 (45%), Gaps = 27/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W    L QA QG+      P+G +  I  DSR     +AF A+KG  +D HDF+   VQ+
Sbjct: 14  WDASQLQQATQGYWHNNRQPEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +      + I    V D   AL  L    R +  K  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVEQPL-----DVDIFQLIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELRPEHQYAVMELGASHQGEIDYTSKLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI++ +   GT  L  DD F + +K    A+
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYQHIAVDGTAILPADDDFTDQIK---QAI 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + SFG  ++ +         ++ S  ++        +     G H  QN L     
Sbjct: 246 QTQKMLSFG--QDGEIYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D++  ++ LS     +GR    +     G    ID++YNANP SM+AA  VL+Q
Sbjct: 304 ALAIGIDLNNIVQGLSAAQGAKGRLNFIQ----HGHHLFIDDTYNANPGSMRAAAGVLAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G ++ V GD+ E+G+ S   H  L   L+   + ++   G    A++     S 
Sbjct: 360 ----QTGIKVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIVAVGEFAGAMQQGAASSD 415

Query: 423 H---VHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
           H   +    T      F+   +          + K S       L+  L+E+ 
Sbjct: 416 HPEKLKAFTTQAQALPFLIELIQQHQPQSMSFLFKGSRYTHMETLMADLMEKL 468


>gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 470

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 173/449 (38%), Positives = 249/449 (55%), Gaps = 12/449 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+RSIA  + F A+K    DGH+F+  A++KGAG  +V+            
Sbjct: 20  DWRVDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSRRPEGVSED--A 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  VDDV   L  L  A R R+ A +IA+TGSVGKT+TKEML   LS   +T+A + SY
Sbjct: 77  PLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+AP HL  F GI
Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGI 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQL 260
           E IA+ KA I +GLE  G   LN D +   +L++ +  +    +  FG         + L
Sbjct: 197 EGIAAEKAAIMDGLEPGGVAILNADIAEAPILQSVAERV-TSDVQWFGTGTGPIAPTYHL 255

Query: 261 RKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  +++   V L  G++  +    +G H A N L  L  ++ L  D+  A+++LS+
Sbjct: 256 TGTTLRGDETEAVVMLPGGQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSL 315

Query: 320 FHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + P  GRG R   +L   QG   L+D+SYNANP S+ AA++VL+       GRRIA LGD
Sbjct: 316 WSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGD 373

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G   Q  H DLA++ ++  +  +   G  + AL  ALP      +  T   +   +
Sbjct: 374 MKELGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPADKRGGHYATSHDVRADL 433

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  GDVV+ K S S    ++++ + E
Sbjct: 434 AGHIAAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 474

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 135/481 (28%), Positives = 206/481 (42%), Gaps = 30/481 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   + G + IDSR +     F A  G H DGHD+  
Sbjct: 1   MIAL-SLAEIAEIVGGQAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   VDDV  AL  LA A   R    ++A+TGS G
Sbjct: 60  -------RAVAAGAVAVLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT  R   +    + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLDRHAPTVWTPGSLNNEIGLPLTALRASDETRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGTIFLNYDDSFFELL 235
           T L  P I ++  +  AH+  F G E+IA AK E+ E L      G   LN DD     +
Sbjct: 173 TGLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPAAEDGGVAVLNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
            +++ A     +  FG++  A  +    +          +       +V     G H   
Sbjct: 233 ASRTKA----RVTLFGEADEAAVRAENVRLTENGQPSFRLHTPTGCSDVTLRLYGEHHVS 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +   L   V+    ALS          R          T+++++YNANP SM+
Sbjct: 289 NALAAAAVAHELGMPVEEIATALSEAGTLSRW--RMEVTERPDGVTIVNDAYNANPESMR 346

Query: 355 AAISVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-- 409
           AA+  L+   + +     R  AVLG M E+G+ S   H  +  +    N+S +   G   
Sbjct: 347 AALRALAAMGRAAQARGARTWAVLGKMAELGDASLVEHDAVGRLAVRLNVSKLVAVGDRE 406

Query: 410 ----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + A  +       VH S+        ++S L  GDVV+VK+S S G  ++   LL
Sbjct: 407 ASWLQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVGLEQVALALL 465

Query: 466 E 466
           +
Sbjct: 466 D 466


>gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
 gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
          Length = 458

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 205/452 (45%), Gaps = 27/452 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+RS+ P + F A++G H+DGH +I  A++KGA  VVV+T        +++P + V 
Sbjct: 24  VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDT----VQAEIAVPQWVVK 79

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D + AL  +A   R   +  ++ +TGS GKT+ K ML         T A  G+ NNHIGV
Sbjct: 80  DTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCRQAGPTVATAGNLNNHIGV 139

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+     F I E G S  GEI +LT L++P +A++  + PAH++ F  ++ IA  
Sbjct: 140 PQTLMRLEQQA-FAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAHMAGFGSLDAIAQE 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI------YSFGKSKNADFQLRKW 263
           K +I+ G        +N DD++ +   A+    GI TI        + K+   D  +   
Sbjct: 199 KGDIYGG-SNLRCAVINLDDNYAQEFLAR--NGGITTIGFTASPIQYEKNSGVDTLIYGE 255

Query: 264 KQCSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               +       ++ L+G    V     G H   N L        L    +   K +S F
Sbjct: 256 CLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAHELIAKGVSQF 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               GR +R          TLI+++YNANP SM+AA + L+          + V+GDM E
Sbjct: 316 QGVAGRMQRVSTKCCH---TLINDTYNANPGSMRAAANYLAHAK-----HSVMVVGDMGE 367

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G    + H DL        I +++  G                 + E    L   +Q  
Sbjct: 368 LGSDELAQHFDLGRYAKSQKIKNLFAVGELSKQTVAGFGEG--ATWFEDKVALASALQQQ 425

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +   VV+VK S S     +I LL++     Q
Sbjct: 426 DLSDAVVLVKGSRSAKMEEVIELLVKNDEVSQ 457


>gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 539

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 133/483 (27%), Positives = 216/483 (44%), Gaps = 32/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +   +++A  G +IG+     Q F +  + DSR +     F A  G   DGH FI
Sbjct: 1   MIKL-SAAQIIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAI 113
             A ++GA L +V  +++   G +  P   V DV+ A+  LA       R + + T+I I
Sbjct: 60  PMAFERGATLALVEREVLDEQG-VPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L    +    T A +GSYN+ +GVPLT+ R      + + E+G  H+G
Sbjct: 119 TGSAGKTTTKDLLAAIFTPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L ++  P    I  +  AH   F G++ I   K E+ EG++ TG++ LN DD    
Sbjct: 179 NIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDE--R 236

Query: 234 LLKAKSHALGIKTIYSFGKSKNAD-------FQLRKWKQCSEQS-WMEVQLQ-GKSMEVV 284
           +L+  S ++   T +  G+   A+             +          ++L  G   E+ 
Sbjct: 237 VLRMASRSVAPITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEIS 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N+L    +        +   +AL+          R          T+I++
Sbjct: 297 SQLIGEHHVHNLLAAATVAYNSGISGEKIARALNKAAAASKW--RMARTDRADGVTVIND 354

Query: 345 SYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +YNANP SM AA+  L+Q+      +     R  AVLG M E+G+ S   H  +  ++  
Sbjct: 355 AYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLVVR 414

Query: 399 YNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            NIS +   G       +A            + +T +     +++ +  GD+V+ KSSN 
Sbjct: 415 MNISKLIAVGDETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNG 474

Query: 455 CGF 457
              
Sbjct: 475 AKL 477


>gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 481

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/492 (24%), Positives = 200/492 (40%), Gaps = 33/492 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M+ + T   +   + G  +  +         +  +  DSR I   E F A+ G  +D HD
Sbjct: 1   MSAMTTLAQVHAMLPGSILVNISLEAAQALSITRVGTDSRQIDAGELFVALAGERFDAHD 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F+      GAG  +++          ++P   ++D   AL +LA A R+     +  +TG
Sbjct: 61  FLSDVASSGAGAALISNKDKCP---KNLPAVCIEDTRAALGQLAKAWRVTRHIPLALVTG 117

Query: 116 SVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           S GKTT KEM+     +      T    G+ NN IG+PLTL ++       + ELGM+H 
Sbjct: 118 SNGKTTVKEMIASIFKAAVGESHTLVTKGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHP 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE   L  + + +IA+I      H    + +  +A   A++   L + G      D  F 
Sbjct: 178 GETALLADIAQANIALINNAQREHQEFMATVAAVAQEHADVIRALPQDGIAVFPGDSEFT 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           +L +  +    +          NA       K  ++   +EV  +  S+++  + +G H 
Sbjct: 238 DLWRKAAADRKVLDFVLSSTQTNAS-SAVGGKLLNDG-RIEVNTENGSIQIQLNTLGNHN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L    +       +    + L  F P  G   R +        TLID+SYNANP S
Sbjct: 296 VRNALAASAVAIAAGISLKKIQEGLESFQPVNG---RMQAKTIDANHTLIDDSYNANPDS 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++AAI  L Q   +       VLGDM E+G+    FH ++    +   IS ++  G    
Sbjct: 353 VRAAIDALKQSGNNA----WIVLGDMGEVGDQGPEFHQEVGAYAAEQGISKLFALGEQCQ 408

Query: 413 ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDV-------VVVKSSNSCGFYR 459
                   +          +   MD L   ++ +L    +       ++VK S      R
Sbjct: 409 FAIQGFESAKGKSALSSATHFSNMDSLIAQLRDALHAQALGTNQHLNILVKGSRFMRMER 468

Query: 460 LINLLLEEFPAI 471
           ++  LLEE  A 
Sbjct: 469 VVQALLEEAKAC 480


>gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter cryohalolentis K5]
 gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter cryohalolentis K5]
          Length = 482

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 213/480 (44%), Gaps = 29/480 (6%)

Query: 4   LWTFHDLLQAI---QGHS------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +W   +LL A     GH        G         I+ D+R+I P + F A+ G ++DGH
Sbjct: 16  VWQEDNLLAATAALDGHWQLSEEQSGSKNDVMSTRIATDTRTIKPGDIFLALTGDNFDGH 75

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAI 113
           D++  A+ +GA   +V   +  +  + SIP   V D   AL +LA   R + +  T+IAI
Sbjct: 76  DYLDTAIAQGAVAAIVARPIATADAN-SIPQLVVSDTRLALGQLAAYRRQQHQNLTVIAI 134

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTT KEML      +  T    G+ NN +GVP+ L  +     + I ELG +H+G
Sbjct: 135 TGSSGKTTCKEMLGSIFGRLAPTLITRGNLNNDLGVPMMLLELSDHHRYAILELGANHIG 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI + T +V+P +A I  I  AHL  F   E I   KAEI+  L  +    +   D F  
Sbjct: 195 EIAYTTEIVQPDVACILNIGTAHLGEFGSREGICQTKAEIYHTLNDSQFAIVPDKDDFTN 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L+  +       +  FG +   D          E+S  ++ +  +  ++     G H  
Sbjct: 255 QLRRIAEKH-TSHVIGFGST---DVSASHLDVEPERSEFKLHIGNQVHDINLPLAGEHNV 310

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L        L  +V   +  L    P +GR          G   LID++YNANP S+
Sbjct: 311 NNALAAAACAHALNIEVSDIVVGLENARPAKGRLNSQLL----GMHRLIDDTYNANPHSV 366

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA  VL+       G ++ VLGD+ E+GE + S H  L   ++   I+ +   G +   
Sbjct: 367 RAAAKVLAA----QTGTQVMVLGDIAELGEAAVSEHQSLGRTIATTGINVLLCVGEYAPY 422

Query: 414 LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
             +       I+ +     D L  +++  L         V+ K S S     LIN L+EE
Sbjct: 423 TVEGAQEISDINAYAFTDKDSLLAYLKPYLQAQQAQPCTVLFKGSRSMEMETLINALVEE 482


>gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella kingae ATCC 23330]
          Length = 454

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 128/439 (29%), Positives = 203/439 (46%), Gaps = 21/439 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +N I  DSR     + F A+ G ++D HDF+   + KGA  +V   D V   G    
Sbjct: 21  NQPINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALVSRDDFVGVSGC--- 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACI 140
               VDD L AL KLA A R      +  ITGS GKTT KEMLT  L          A  
Sbjct: 78  --LKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLTTVLREKFGADAVLATA 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-N 199
           G++NNHIG+PLTL  +     + + E+GM+H GE+  LT + +P++A++     AH+   
Sbjct: 136 GNFNNHIGLPLTLLNLRESHRYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCG 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F+G+++IA AK+EI++G+++ G   L  DD+   + +A    LG++T  +FG ++  D  
Sbjct: 196 FNGVDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQAACKDLGLQT-QTFGFAQG-DIH 253

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
               K     S  ++    + + +     G H   N      +            + L+ 
Sbjct: 254 AENVKLQPLVSEFDLVQGSERVHITLPVAGKHNVSNACAAATLALAGGVKFTEIARGLAN 313

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F   +G   R +        T++D++YNANP SMKAA+ VL+++        + V+GDM 
Sbjct: 314 FANIKG---RLQVKHGIKNSTILDDTYNANPDSMKAALDVLAKMPAPH----VFVMGDMG 366

Query: 380 EMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           E+GE  +   H ++        I   +  G + +   +         +    D L L + 
Sbjct: 367 ELGENEAPKMHEEIGIYAKNLGIELAYFVGENSVQAAEKF--GADGLWFVDKDPLILSLT 424

Query: 439 SSLVDGDVVVVKSSNSCGF 457
             L +   V+VK S     
Sbjct: 425 HDLPENASVLVKGSRFMKM 443


>gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
 gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
          Length = 452

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 200/463 (43%), Gaps = 19/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++   +     G +     ++G+ IDSR +     +  I G   DGH F    ++ G
Sbjct: 5   TIHEITNMMHATLHGDIDDTKKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQTIEDG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   D    +     PV  VDD L A+  L+ A        +I +TGS GKT+ K+
Sbjct: 65  ALISLWQKDH---VPYPDFPVILVDDTLRAMQDLSKAYLDELHPLVIGVTGSNGKTSCKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML    S  KKT    G+ N+ IG+PLT+     D++  I E+GM + GEI  LT + +P
Sbjct: 122 MLYSIFSQEKKTQKTQGNRNSEIGLPLTIFDFDEDIEVAILEMGMENKGEITQLTSIAQP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+VIT+I  AH+ N  G  +IA AK EI EG ++ G    NY+    + +         
Sbjct: 182 DISVITSIGSAHMENLGGKLQIAQAKCEILEGTKENGLFLYNYESKEIQEVLCTLDTEN- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K + SFG+  +        +   E    +  +      V     G   A N L  + I  
Sbjct: 241 KNVVSFGQGGDVSIT-SDIEYDKEGIVFKCNILD--APVHLRAFGDFQAMNALPCIYIAK 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 ++ +  L      + R +            ++D++Y +NP S KAAI  L ++ 
Sbjct: 298 ACHLKEESILNGLKNLEMTKMRTQLISVK----NAYILDDTYKSNPESAKAAIDTLMELP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +   + IA++ DM ++G   +  H D+        +  ++ +G       D      + 
Sbjct: 354 AN---KHIAIISDMLDLGSEEKQLHYDVGVYAKEKGVDELYCTGPLSKETADGF----NG 406

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + ET D ++   +  L    ++++K S +     L++    +
Sbjct: 407 KWYETKDEIYEACKPLLDKDCIIMIKGSRAMKMDTLVDAFRGK 449


>gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 427

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 201/448 (44%), Gaps = 34/448 (7%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                +P+  +  + +DSR I     FFAI+    +G+ ++  A+ KGA LV+ +     
Sbjct: 10  KKFPSLPKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIADRYSGN 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                   V  V++ +  + +LA   R   K  +IAITGS GKTTTK+++   LS   +T
Sbjct: 66  HEK-----VIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQT 120

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +H
Sbjct: 121 KKTLGNYNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSH 180

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L      E +  AK E+   L + G    + DD F + + A             G  +  
Sbjct: 181 LEFLKTRENVFKAKTELLPYLPE-GCFITSGDDVFLKKIPA----------IHVGYDERN 229

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D+++  +K+   +S    QL  K  E      G H   N  M + I   +  D  T  + 
Sbjct: 230 DYRIFGYKKKDRRSSF--QLNDKQYE--IPLEGKHNVMNAAMGIAIAETIGMDSKTIQQN 285

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L        R +R            I+++YNA+P SM  A+  L + +      +IAVLG
Sbjct: 286 LLQIELSPMRFERSEYQ----GTKYINDAYNASPISMGVALDSLVETTAEC---KIAVLG 338

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFL 435
           DM E+GE   +FH D+ E     ++  + L G  +  AL++       V + E  + +  
Sbjct: 339 DMLELGEKEVTFHKDVIEKAISCSLQAILLYGPRMKKALQEFSNIPNKVLHFEKKEEIKD 398

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +++        V++K+S       +I  
Sbjct: 399 YLKQFPRK--TVLIKASRGMKLEEIIER 424


>gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
          Length = 456

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 201/450 (44%), Gaps = 23/450 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V  +  DSR     + F A+ G ++D HDF+   + KGA  +V  +D+    G  
Sbjct: 23  AENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIVSRSDLAGVAGCF 82

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYA 138
            +P     D L AL ++A A R      +  ITGS GKTT KEML   L +        A
Sbjct: 83  FVP-----DTLHALQQMAAAWRKAVNPFVFGITGSSGKTTVKEMLAAVLRAKFGADAVLA 137

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL  +     + + E+GM+H GE+  LT +  P  A++     AH+ 
Sbjct: 138 TAGNFNNHIGLPLTLLNLRGHHRYAVIEMGMNHFGELAALTRIAAPDTALVNNAMRAHIG 197

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F+G+ +IA AK+EI++GL + G   L  +D+   + +A  + L      +FG ++  D
Sbjct: 198 CGFNGVADIARAKSEIYQGLPENGVALLPAEDANLPVFQAACNGL---KTLTFG-AEQGD 253

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                       S  ++    + + V     G H   N      +       +      L
Sbjct: 254 IHAENIDLQPLSSTFDLVYGTERVRVSLPAAGRHNVANACAAAALAVQAGVSLAEIAIGL 313

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F   +GR ++ R   N     ++D++YNANP SMKAA+ VL++        R+ V+GD
Sbjct: 314 AAFGNIKGRLQQKRGIRNA---LILDDTYNANPDSMKAALDVLAKQPAP----RVFVMGD 366

Query: 378 MCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  +   H ++        I + +  G +     +    +    +    D L L 
Sbjct: 367 MGELGEAEAPKMHEEIGVYARELGIEYAYFVGDNSAQAAEKFGAA--GLWFADKDPLILS 424

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   L +   V+VK S       + + L E
Sbjct: 425 LAHDLPENASVLVKGSRFMRMEEVADALAE 454


>gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1058]
          Length = 456

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P + F  +KG   DGHDFI  A   GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +  +         P   VDDVL A   LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSDHPVAEG------PYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADYK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L   ++  +    +     K ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTCLEERKDSLSFDCNFLEKRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 468

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 219/470 (46%), Gaps = 14/470 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A +G  +G  P   V G+S D+R+++P + F A+KG  +D HD +  A 
Sbjct: 7   TPQFTPDELAGATRGRWLGAPPSA-VAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +       V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSEAWAAAHPAPPRAALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     ++ +A AKAE++EGL   G   +N DD+    +  +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA---RMLKRGVA 242

Query: 242 LGIKTIYSF--GKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHG-IGYHMAQNML 297
            G + + +F  G+ +  D  + +    S E     + +  + + V   G +G H A+N  
Sbjct: 243 SG-RRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAA 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   +        + L+   P    G+R R         L+D+ YNANPASM AA+
Sbjct: 302 AAACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAAL 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALK 415
            VL  ++     R  AVLGDM E+G      H  L    +   ++ +   G      A  
Sbjct: 359 DVLRDLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEA 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                     ++E +D L  F++  L   DV++VK S      RL+  L 
Sbjct: 419 AGAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468


>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
 gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
          Length = 519

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 224/507 (44%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 7   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 65

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATI 110
           GHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR    +  T+
Sbjct: 66  GHDFVARAGESGAVVALVQHEVDAPVAQIVVPDTV--DALGLLAKANIAARRTVGTPFTL 123

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G S
Sbjct: 124 IGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN DD+
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243

Query: 231 FFELLKAKSHALGIKTIYSFGKS---------------KNADFQLRKWKQCSEQSWMEV- 274
               +   +       ++ FG +                +A F         ++    + 
Sbjct: 244 HVATMAPLAPQ---GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 300

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 301 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 360

Query: 335 NQG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 421 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 480

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 481 ALAGDHDDTVVLLKGSHASGLSALAQR 507


>gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 463

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 206/470 (43%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + +  ++ +A+ G       P+  V G +  DSR I P   F A  G H DGHDF  
Sbjct: 1   MIAM-SLAEIAEAVGGRLSDTANPETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSV 117
                    V            +  P   VDDV  A  KLA A   R  +  II +TGS 
Sbjct: 60  -------AAVADGAVAALVSREVDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSA 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++     ++  T A  G+ NN IG+P T+ ++     + + E     +G I +
Sbjct: 113 GKTSTKDVMAELCRALGPTVAPEGTLNNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDY 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P IAV+  +  AH+  F  ++ IA AK E+ E +   G + LN DD       A
Sbjct: 173 LCGIAPPGIAVVINVGTAHMGEFGTVDGIARAKGELAEAVAPGGVVILNADD----ARVA 228

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    + +FG++++AD +       + Q    +     S  V     G H   N L
Sbjct: 229 AMRDRARARVVTFGEAESADIRATDVVSEAGQPRFTLHTPNGSAPVALKLYGAHHVSNTL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L    +     +S   P     +R          T+ID+SYNANP+SM AAI
Sbjct: 289 AAAAVAVELGMAAEAIASVVS--GPLSLSPRRMDVFTRADGTTVIDDSYNANPSSMAAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L+ +    E R+IAVLG M E+G+ +++ H+ + E+ +  +I  V        A+ + 
Sbjct: 347 NALADL--GKESRKIAVLGYMAELGDETEAAHLQVGELAARNDIDIVISVEEVAAAIAEG 404

Query: 418 LPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  + Y  +        +   L  GDVV+VK S     +++ + L E
Sbjct: 405 AGLAGSIAYGVDDQAEAIAKLDELLDVGDVVLVKGSR-YRTWKVADYLRE 453


>gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
 gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
          Length = 452

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 222/465 (47%), Gaps = 23/465 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + + ++G   G      V G  ID+R++   + FFA+ G   DGH+F+  A + GA 
Sbjct: 6   LSQITRVLRGEWHGD--DCHVKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGAS 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEM 125
             VV       +  + +P   V D   AL  LA   R +   T  +A+TGS GKTT KEM
Sbjct: 64  AAVVERY----LEDVDLPQCVVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS++  T A  G++NN +G+PLTL R+  +  F + E+G S  GEI +LT + +P 
Sbjct: 120 LKQILSAVGSTCATQGNFNNDLGLPLTLLRVGREHQFAVLEMGASQFGEIEYLTQVAKPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++    PAHL  F  I  +A  K EI+ GL + G   +N DD   +  ++       K
Sbjct: 180 VALVNNAGPAHLDGFKDISGVARGKGEIYNGLGEKGIAIINADDIHADYWRSLC---ADK 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           T+ SFG   +AD Q  +W   ++   ++V   +L   S+ +     G H A+N +    +
Sbjct: 237 TVVSFGLENSADVQG-QWSSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAAAV 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D+D   K LS   P  GR         +G F LID++YNANPAS+ A I V   
Sbjct: 296 ALAAGVDLDAVEKGLSKVRPVAGRMVPMTA---RGGFYLIDDTYNANPASLMAGIDV--- 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   +      LGD+ E+G+ S++ H  L E +    +  ++  G       +      
Sbjct: 350 -ALDMQRPVWLALGDLAELGDNSETVHAQLGEQVQQRGVQRLFTLGEQSKNAAERFGEGA 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++ + L   I++      V++VK S S    R++ LL EE
Sbjct: 409 AA--FDSPEALAQQIETLATRDVVLLVKGSRSSRMERVVRLLSEE 451


>gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R]
 gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 514

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 128/490 (26%), Positives = 207/490 (42%), Gaps = 34/490 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++   + G   G   +  +  + +  DSRS+ P   F A+ G   DGHDF   A++
Sbjct: 4   MTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVAARL-- 104
           KGA  V+   ++   + ++ +P   + +                V+ AL++LA       
Sbjct: 64  KGAVAVLAAREV--DVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSRLARHVVDIC 121

Query: 105 --RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
               +  ++AITGS GKT+TK+ +   L     T A  GS+NN +G+P T  R   D  +
Sbjct: 122 VAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTALRCTTDTKY 181

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--- 219
            + E+    +G I+ LT +  P IA +  +  AHL  F   E IA AK EI E L     
Sbjct: 182 LVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKT 241

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278
            G   LN DD F   +  ++ A  +      G++  +D+        +  ++   +  + 
Sbjct: 242 GGVAVLNADDPFVARMAPRTKARVVWFSTDAGQANKSDYWATSISLDAVARASFTLNTKD 301

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L    I        +  +  L           R         
Sbjct: 302 GSWPVALQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAH--RMDVKTRADG 359

Query: 339 FTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            T+I++SYNANP SM+A I+ L+   S   E    AVLG M E+G+ +   H +L   L+
Sbjct: 360 VTIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELA 419

Query: 398 LYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            YN+  +   G +       + A    +  H    +D     +   +   DVV+VK+SN+
Sbjct: 420 KYNVQELVAVGENPNCAALAESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLVKASNA 479

Query: 455 CGFYRLINLL 464
              +R+   L
Sbjct: 480 DRLWRVAEAL 489


>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
 gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
          Length = 473

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 197/470 (41%), Gaps = 19/470 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     + + + G +   + +     + IDSR +     F A++G   DGH +I     K
Sbjct: 7   MLDLQGIGRIVVGDAADGLSRIVEPVVVIDSREVQEGGIFVALEGERTDGHRYIDDVFAK 66

Query: 64  GAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           GA L VV+    AS G             VDD +  L ++AVA R      + A+ GS G
Sbjct: 67  GASLAVVSEAWYASHGQKDGAAGRRSYLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNG 126

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE++   L    K +   G+ NNH+GVPLTL +M  D +  + E+G++H GE+  L
Sbjct: 127 KTTTKELIASVLGVGFKVHMSRGNRNNHLGVPLTLLQMKRDTEIAVVEMGINHPGEMELL 186

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKA 237
             +  P   ++T I   HL     ++ +A+A+  ++E L+   G  F+N DD +      
Sbjct: 187 ASIAMPTHGLLTNIGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPWL----- 241

Query: 238 KSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            S A  ++    +G +   +              +    + L      V     G H   
Sbjct: 242 LSAASKLERAVLYGLNGCGEGVPHAESAALDPFGRPSFMLCLSQACESVTLSLTGRHNVV 301

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L      S L   +    + L    P  G  +        G   +++++YNANP SM+
Sbjct: 302 NALAAAAAGSYLGLSLREIKEGLENMIPATGWKRLEFQE--AGGVMIVNDTYNANPDSMR 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            AI +L  +     GR+IAVLGDM E+G  ++  H      +    I  ++  G      
Sbjct: 360 LAIDLLCDLQ--CSGRKIAVLGDMLELGSSAELEHEKTGRYIQQSGIDLLFTFGDLSKHF 417

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 S    + E+ + L   +   +  GD V+ K S       + + L
Sbjct: 418 STG-NASRSCGHFESREALASALGDVVASGDAVLFKGSRGMKLEEVADAL 466


>gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
 gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
          Length = 478

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 194/467 (41%), Gaps = 15/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP++T H+    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   NPMFTLHEAAALIPGATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +     +V   +       ++P+  V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVSAALVAR-VPDGWDVSAVPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTT 124

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++     +  A +G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 125 VKEMIASIFAAAVGANERLATVGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +A++      H    + +E +A   A +   L   G      +D++  + +  
Sbjct: 185 AKIAEPTVALVNNAQREHQEFMATVEAVALEHASVIHALNPEGVAVFPANDAYASIWRVA 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +       I  F  +              +   + ++    + EV    +G H A N L 
Sbjct: 245 ATG---NRIVDFALNTAERTTAAAVTGRFDGKRLSIETPEGAFEVTLQVLGDHNAHNALA 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +  +         T+ID++YNANP SM+AAI
Sbjct: 302 ATSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDTYNANPDSMRAAI 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+         R+ V+GDM E+G+    FH ++        I  ++  G        A
Sbjct: 362 DVLAS----HASPRVLVMGDMGEVGDHGPEFHREIGAYAKERGIDALYAMGDASRDACTA 417

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 418 YGAG--AHHMADVGTLVAQLQQAGYGAAATLLVKGSRFMQMERVVDA 462


>gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1057]
          Length = 456

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 206/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P + F  +KG   DGHDFI  A   GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +  +         P   VDDVL A   LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSDHPVAEG------PYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADYK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L   ++  +    +     K ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTCLEERKDSLSFDCNFLEKRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxidans DMS010]
 gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxydans DMS010]
          Length = 451

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 133/459 (28%), Positives = 205/459 (44%), Gaps = 19/459 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T + + + +   +I       V+G  +D+R I   + F A+KG H DGHD++  A + GA
Sbjct: 6   TLNQVAEIVACDAI--YADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQAREAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V+      I   ++P   V DV  A   +A A + + KA ++AITGS GKT+ KEM
Sbjct: 64  AAALVS-----EIQDDALPQLVVADVRKAFAHIARAWQQQCKARVVAITGSNGKTSVKEM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L  +    A  G+ NN +GVPLTL+ +  D DF + E+G +H GEI  L ++V P 
Sbjct: 119 VTTMLKQVGSVTATQGNLNNELGVPLTLSCLNQDDDFAVIEMGTNHHGEIAELVNIVVPD 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVI  IA AHL+ F  +E +A  K  I++GL   G   +N D  +  L +     +G +
Sbjct: 179 IAVINNIAAAHLAGFGSLEGVAKEKGAIYDGLAANGIAVVNADMPYQRLWQ---PLIGDR 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SF     AD +    +     S   V +   S        G H   N L  + +   
Sbjct: 236 KTISFSLESEADIKADYIQLDPASSHFLVNIDDVSHHFNLPLPGMHNVNNALAAIAVAVA 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   VD  +K LS+         R +         LID++YNANP S   A++ L+    
Sbjct: 296 LDIPVDAMVKGLSLMRSVP---HRLQVRQGVNDSRLIDDTYNANPGSYLQALNTLTAFQ- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G    VLGD  E+G  + + H  + +      +S +   G        +        
Sbjct: 352 ---GEHWLVLGDFGELGIDNDNIHQQMGQQAREAGVSRLMTVGNSSKIAAHSF--GDDAV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + E +  L   +Q  L      ++K S      +L + L
Sbjct: 407 HYEDLGVLQHTLQQELSKDVTCLIKGSRFMQLDKLADQL 445


>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9902]
 gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9902]
          Length = 449

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 208/463 (44%), Gaps = 24/463 (5%)

Query: 6   TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   L+ A  G  +G    P   +  I  DSRS+   + F  + G ++DGH F+      
Sbjct: 4   TVRQLI-ACWGAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSAL 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV       + S  +  + VDD L A  +LA+  R      ++A+TGS GKTTT+
Sbjct: 63  GAQAAVVEQSWSDPLPSDLL-HWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTR 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++  AL+ +   +   G+ NN IGVPLT+          + E+GM   GEI  L+    
Sbjct: 122 ELIRAALAPLGDVHCSEGNNNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTE 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AH+      E IA+AK EI   L+  G + +   D+  E   +K   + 
Sbjct: 182 PDVAVITNIGTAHIGRLGSREAIAAAKCEITAALKSDGVVVIPAGDALLETALSK---VW 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +     + +                   QL+  +  +     G H A+N+L+ L + 
Sbjct: 239 SGRVVRVRLADDTPVAADCIGAIDAG-----QLEVGAHRLPLPLEGRHNARNVLLALAVA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D  +A           GR +R      QG  TL+DE+YNA+P ++ AA+++LS  
Sbjct: 294 DQLGVD--SASLNAMEVSVPGGRNRRLV----QGGLTLLDETYNASPEAVMAALTLLSSQ 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                GRR AVLG M E+G  S   H D+A   +   +  + +   G    A+ +A    
Sbjct: 348 P----GRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGL 403

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +    + +     ++  L  GDVV++K+S      RL+ LL
Sbjct: 404 PRLAVVSSPEDAAKPLKEWLRPGDVVLLKASRGVALERLLPLL 446


>gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
 gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
          Length = 468

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 208/472 (44%), Gaps = 27/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L++A QG+      P+  +  I  DSR     +AF A+KG  +D HDF+   + K
Sbjct: 14  WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDK 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +   +         V D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPLDLDMM-----QLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  +  AHL  F G E I  AK+EI+  + K GT  +   D F + ++   HA+
Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG  +  D    +    ++ +   +       EV     G H  QN       
Sbjct: 246 QTTRVLSFG--EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L +    +GR        +      ID++YNANP SM+AA  VL+Q
Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGRLNFI----SHKQHLFIDDTYNANPTSMRAAGEVLAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
            S    G ++ V GD+ E+G+ +   H  L   L   +I+ V   G    A  +      
Sbjct: 360 QS----GIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFVVTIGEFAPAALEGARSTR 415

Query: 421 -SIHVHYSETMDGLFLFIQSSL---VDGDV-VVVKSSNSCGFYRLINLLLEE 467
               +    T      F+ S +       +  + K S       L+  L+E+
Sbjct: 416 YGKKMQAFLTQAQALPFLMSLVETHQPQSMSFLFKGSRYTHMETLMADLMEK 467


>gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
 gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
          Length = 453

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 215/469 (45%), Gaps = 27/469 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    +G      +  +S D+RSIA    F A+ G  +D H+F   AV  GA
Sbjct: 5   SLSQLTTVLDAQLVGDDTD--IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V          +++P   V +   AL +L      +     +AITGS GKTT KEM
Sbjct: 63  KALLVER-----ALDVNVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  +     G++NN IGVPLTL R     D+ + ELG +H+GEI +   LV+P 
Sbjct: 118 VASILSAKGQVLFTAGNFNNDIGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  I+ +  AK EI++GL    T  +N D     L ++    L  K
Sbjct: 178 VALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGYTAVVNLDSQGGALWQS---VLADK 234

Query: 246 TIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +F  +++ ADF  R     +   +   +      + V    IG H   N L    + 
Sbjct: 235 SVKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAASALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +      L+     +G   R          TLID+SYNA+  +MKAA+ +L   
Sbjct: 295 IEMGATLADIQHGLAHLSKVKG---RVDVTELTDHITLIDDSYNASVPAMKAAVDLLGGF 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S      R  +LG+M E+GE S + H  + E  + +   +V   G     + D      H
Sbjct: 352 SAT----RWLILGNMAELGEESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDV----CH 403

Query: 424 VHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468
             +  +   + +FI+  L        V++VK +NS G  +++  L E++
Sbjct: 404 GRHFASHQDMIMFIEQHLEQQPDRTHVLIVKGANSAGMSKIVAALKEKY 452


>gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
 gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 199/464 (42%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ + ++            + G+S DSR+I     +  + G  +DG  FI     K 
Sbjct: 5   SLGEISRMLKAELCDKAYDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKK 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
           A   +++ D      ++SIP   VDD L AL  LA A R   S   II ITGS GKTTTK
Sbjct: 65  AAAFLIDKDYKIK-NNISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L   L         IG+ NN IGVP T+  +  D +  I E+G    G+I   T +V+
Sbjct: 124 DLLYEVLKKKFNVQKTIGNLNNEIGVPKTILSLREDCEVAIVEMGTDSFGDISLTTSIVK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +HL      E I  AK EI EGL   G    N DD   +  K  S    
Sbjct: 184 PDIALITNIGDSHLEKLKTKEGILKAKMEIVEGLNPEGYFIYNGDDPTIK--KDISLYTI 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   SFG++ + DF ++   +   +        G   E     +G H   N    L I 
Sbjct: 242 KQKKISFGENDDNDFVVKDVGEKLAKVSFS--HDGDVYE--IPLLGSHNVYNGGACLLIS 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S+L    +   + L    P   R +          F ++D+ Y +NP S+++ ++    +
Sbjct: 298 SLLGLSKEQIKEGLLEVTPANNRSRIIEF----DGFDVLDDCYKSNPQSLRSGLNTTKML 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
             +    +I VLGDM E+GE  +  H  + + +   ++ +    G     +      +  
Sbjct: 354 GGYDN--KILVLGDMLELGESEKDLHYQVGKEIDPKDVHYCLFFGELSYYMYQGALENFP 411

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              + +  + + L   ++S +    ++ VK S+      +I  +
Sbjct: 412 KNRLFHFTSKNDLIDKLKSLITRSSLLFVKGSHGMHMEEIIESI 455


>gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           furnissii NCTC 11218]
          Length = 453

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 215/469 (45%), Gaps = 27/469 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    +G      +  +S D+RSIA    F A+ G  +D H+F   AV  GA
Sbjct: 5   SLSQLTTVLDAQLVGDDTD--IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V          +++P   V +   AL +L      +     +AITGS GKTT KEM
Sbjct: 63  KALLVER-----ALDVNVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  +     G++NN IGVPLTL R     D+ + ELG +H+GEI +   LV+P 
Sbjct: 118 VASILSAKGQVLFTAGNFNNDIGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  I+ +  AK EI++GL    T  +N D     L ++    L  K
Sbjct: 178 VALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGNTAVVNLDSQGGALWQS---VLADK 234

Query: 246 TIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ +F  +++ ADF  R     +   +   +      + V    IG H   N L    + 
Sbjct: 235 SVKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAASALA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +      L+     +G   R          TLID+SYNA+  +MKAA+ +L   
Sbjct: 295 IEMGATLADIQHGLAHLSKVKG---RVDVTELTDHITLIDDSYNASVPAMKAAVDLLGGF 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S      R  +LG+M E+GE S + H  + E  + +   +V   G     + D      H
Sbjct: 352 SAT----RWLILGNMAELGEESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDV----CH 403

Query: 424 VHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468
             +  +   + +FI+  L        V++VK +NS G  +++  L E++
Sbjct: 404 GRHFASHQDMIMFIEQHLEQQPDRTHVLIVKGANSAGMSKIVAALKEKY 452


>gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
 gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
          Length = 479

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 190/463 (41%), Gaps = 31/463 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG-----------LVVVNTDMVAS 77
            +  D+R + P   F A+ G   DGHDF   AV+ GA             +VV       
Sbjct: 4   SVEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQ 63

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRS--------KATIIAITGSVGKTTTKEMLTIA 129
             S S+ + G  D  GA    A+A   R           T+I +TGS GKT+TK+++   
Sbjct: 64  ANSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAGGLTVIGVTGSSGKTSTKDVIAQL 123

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +  +  T A  GS+N+ +G P T  R      F + E+    +G I        P I  +
Sbjct: 124 IEPMGPTVAPPGSFNSELGHPWTALRADASTKFLVLEMSARGVGHIAAAAETTPPRIGAV 183

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +  AH+  F   E IA AK E+ E L + G   LN DD     + +++ A     I  
Sbjct: 184 LNVGSAHVGEFGSREGIAKAKGELVEALPEDGLAVLNLDDPLVAAMASRTKA----RIVG 239

Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            G+S  A  +       +E +    +        V     G H   N L    I   L A
Sbjct: 240 VGESAGAQIRAADITVDAEARPSFRLITPEGEAPVTLPLHGEHHVGNALSAAAIARELGA 299

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   + LS    +    +R          T++++SYNANP S++A +  L+ +S    
Sbjct: 300 TTEEIAQRLSSLQRRSE--RRMEVTTRADGVTILNDSYNANPESVRAGLKALASMSRS-G 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHV 424
            R  AVLG M E+GE S + H  +  ++   NI  + + G    A+     +        
Sbjct: 357 RRAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQEAAAMHQGAFQEGSWGEES 416

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++     +   L  GDVV+VK+S + G +R+   LL +
Sbjct: 417 VLVPDVEAAVAVLHDQLRPGDVVLVKASKAAGLWRVAEALLAD 459


>gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36]
 gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 207/470 (44%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L++L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSNLAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
          Length = 427

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 202/448 (45%), Gaps = 34/448 (7%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                +P+  +  + +DSR I     FFAI+    +G+ ++  A+ KGA LV+ +     
Sbjct: 10  KKFPSLPKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIADRYSGN 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                   V  V++ +  + +LA   R   K  +IAITGS GKTTTK+++   LS   +T
Sbjct: 66  HEK-----VIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQT 120

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +H
Sbjct: 121 KKTLGNYNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSH 180

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L      E +  AK E+   L + G    + DD F + + A             G  +  
Sbjct: 181 LEFLKTRENVFKAKTELLPYLPE-GCFISSGDDVFLKKIPA----------IHVGYDERN 229

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D+++  +++   +S    QL  K  E      G H   N  M + I  ++  D  T  + 
Sbjct: 230 DYRIFGYQKKDRRSSF--QLNDKQYE--IPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQN 285

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L        R +R            I+++YNA+P SM  A+  L + +      +IAVLG
Sbjct: 286 LLQIELSPMRFERSEYQ----GTKYINDAYNASPISMGVALDSLVETTAEC---KIAVLG 338

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFL 435
           DM E+GE   +FH D+ E     ++  + L G  +  AL++       V + E  + +  
Sbjct: 339 DMLELGEKEVTFHKDVIEKAISCSLQAILLYGPRMKKALQEFSNIPNKVLHFEKKEEIKD 398

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +++        V++K+S       +I  
Sbjct: 399 YLKQFPRK--TVLIKASRGMKLEEIIER 424


>gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa
           DSM 4126]
 gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa
           DSM 4126]
          Length = 436

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 216/441 (48%), Gaps = 25/441 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     FFA+KGP+++G+ F   A+++GA  VV++          +     
Sbjct: 15  SGICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNT---IL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L AL  LA   R +    I+ ITGS GKTT+KE++   L++  K +A  G+ NNHI
Sbjct: 72  VEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL+L  +  D +  I E+G +H+GEI     + +P   +IT I  AH+  F G E I 
Sbjct: 132 GVPLSLLSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLITNIGKAHIGEFGGFENII 191

Query: 208 SAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+F+ L+K  G  F+N  D+  + ++ +          +F  ++  D QL   K  
Sbjct: 192 IGKSELFDFLKKNDGVPFINTQDAVLKNMEKR-----FSNAITF-PNEGDDLQL---KPE 242

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +++    +G S  +  H +G     N+   L I       ++ AI+A   + P+  R
Sbjct: 243 KGTAFLRYSTEGFSH-IDTHLVGQFNYLNVAAALCIGKYFEVTMEKAIEATQEYMPENMR 301

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +       +T++ ++YNANP SM+ A+  LS I        + +LGDM E+G+ ++
Sbjct: 302 SQMIKT----DNYTILLDAYNANPDSMELAMKSLSAIENTES---VVILGDMLELGDTAE 354

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGD 445
             H  L E+     IS  +  G  + +   A  +     Y ET D L   + +  L  G 
Sbjct: 355 LEHEKLGELAVDLGISKRYYCGKQIQS---ASKKDNFGKYFETKDELIEHLTAKPLKKGS 411

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
            +++K S       ++  L++
Sbjct: 412 TILIKGSRKNALEEIVPFLVK 432


>gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
 gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 464

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 205/453 (45%), Gaps = 34/453 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q +Q      + +  +  + +DSR +     FFAI+    +G+ ++  A++KGA +V+
Sbjct: 42  LCQILQ-KRFSHLKELSIQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEKGASIVI 96

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +             V  V D +  + +LA   R   K  +IAITGS GKTTTK+++   
Sbjct: 97  ADHYFEPHER-----VISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAI 151

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS    T   +G+YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +I
Sbjct: 152 LSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIARPDYGII 211

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I  +HL      E +  AK E+   L   G    + DD F + +              
Sbjct: 212 TNIGDSHLEFLKTRENVFKAKTELLPYLP-QGHFITSGDDIFLKKVSG----------VH 260

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G  +  D+++  +++    +  +V+  GK  E+     G H   N  M + +  ++   
Sbjct: 261 VGYEEGNDYRIVSYRKKERMTSFQVR--GKDYEICL--EGKHNVMNAAMGIALAEMIGMK 316

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS       R +R+           I+++YNA+P SM AA+  L ++      
Sbjct: 317 PEEIQRNLSQIELSPMRFERFEYR----GTEYINDAYNASPISMFAALDSLEEMKAE--- 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R+ AVLGDM E+GE    FH ++ +     ++  V L G  +      LP    +++ E+
Sbjct: 370 RKFAVLGDMLELGEREIEFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEGLYHFES 429

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            + +  +++        V++K+S       +I 
Sbjct: 430 KEAIREYLRK--FSEKTVLIKASRGMKLEDIIE 460


>gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 436

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 212/463 (45%), Gaps = 33/463 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + + G  + +V    +N   IDSR +   + F  +KG + DGH +I  A++KG
Sbjct: 1   MDLVQLKKIVNGEFLNLVKNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +    G        V D   AL ++    R + +  +I ITG+ GKT+TKE
Sbjct: 61  AVGYFSEKPLNFKNG------ILVKDTYQALVEVGKHKRNQVRV-VIGITGTSGKTSTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS++  TYA  G+YNN IGVPLTLA +P   DF I E+G   +G+I +L  +V  
Sbjct: 114 LMNFVLSNLASTYATQGNYNNEIGVPLTLANIPESTDFAIIEMGAGKVGDIDYLGKIVNQ 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+V+ ++   H+  F   E +   K EIF          L                   
Sbjct: 174 DISVLVSVGHGHVEKFGSFENVIKGKGEIFNC---GNYSVLP---------SELKKFYNP 221

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   ++G  ++ D +++  K   + +   ++ +   +E+        + +N+    G++ 
Sbjct: 222 KNPITYG--EDGDIEIKDIKIVKDGTVGIIKYKNDKIELKIPVYNIGVFKNIGAVAGVLY 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    ++ L  F     RG+  +     G FT+ID+SYNANP S+K AI +L+ + 
Sbjct: 280 HLGYDPIKNLEVLKDFKSSSQRGEIIKI----GNFTIIDDSYNANPLSVKNAIEILNSM- 334

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              EG +I VLGDM E+GE SQ  H ++ ++L+   I ++ L G     + + +     V
Sbjct: 335 ---EGFKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYGNETKYVFEEIDDKSRV 391

Query: 425 HYSETMDGLFLFIQS--SLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  D +   I          VV+VK S       +I  L 
Sbjct: 392 KHFDNKDDIAEDILKFSDFQP--VVLVKGSRGMKMEDVILKLR 432


>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 521

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 128/526 (24%), Positives = 200/526 (38%), Gaps = 76/526 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+T  ++     G      P   V+GI+ DSR + P + F A+ G   DGHDF   A
Sbjct: 1   MTQLFTAAEIAALTGGRLAAGDPNAGVSGIAWDSRLVRPGDCFVALAGERADGHDFAAQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
             +GA  V+        + +    V    D L  L +L +A R R     ++ ITGSVGK
Sbjct: 61  AARGAACVLAAR----PVPAGDAAVVVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM    L+   + +   G+ N+ +G+P +LA +  + +  + E+GM   GEI +L 
Sbjct: 117 TTTKEMTAAVLAERFRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP + V+T +   HL      E IA AK+E+   L   G   LN DD     + A +
Sbjct: 177 SIARPQVGVVTNVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAAAT 236

Query: 240 HALGIKTIYSFGKSKNAD---------------------------FQLRKWKQCSE-QSW 271
            A     ++ +G +                                     +        
Sbjct: 237 PA----RVWFYGLTAREAADDAAAAPVATGTAGEAGTPGGRVVGWVTAENARPDGPMAQR 292

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +       +V     G H   N L    +      D++   + LS+F     R +   
Sbjct: 293 FRLVCHLGEADVRLPAPGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFRNAGNRLRLVE 352

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G   ++D++YNA PAS+ AA+ V+   +   EGR +AVLGDM E+G L    H  
Sbjct: 353 ----AGGVRILDDTYNAAPASVIAALEVMRGFAG-PEGRCVAVLGDMYELGALEVEGHRQ 407

Query: 392 LAEVLSLYNISHVWLSGFHVLAL---------------------------------KDAL 418
           +  V +      +   G     +                                     
Sbjct: 408 VGMVAARL-TDELVAVGQLGRHIAEGARAALAGAGGGSAGAGFRGGEGPPEGQGPVAGGG 466

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            R   VH+     G   +++  L  GD V+VK S       ++  L
Sbjct: 467 TRLREVHHVPDNAGAIAWLKERLRPGDTVLVKGSRGMKMEEIVQAL 512


>gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
 gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
          Length = 475

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 188/467 (40%), Gaps = 18/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N ++T  +    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   NAMFTLREAAALIPGATVIGDDSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLADVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +     +V        G  S+P   V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVSAALVAR----VPGGWSVPALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTT 121

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 122 VKEMIASIFAAAVGVDARLATAGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+      H    + +E +A   A +   L   G      DD++  + +  
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTPDGIAVFPADDAYASIWRVA 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +       I  F  +              +   + +Q       +    +G H A N L 
Sbjct: 242 ATG---NRIVDFALNTAERTTEAAVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +    AL      T+ID++YNANP SM+AAI
Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+         R+ V+GDM E+G+    FH ++        I  ++  G        A
Sbjct: 359 DVLAS----HASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGIDALYAMGDASRDACTA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 415 Y--GASAHHVADVGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 459


>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
 gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
          Length = 454

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 219/473 (46%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    T   L++ +   S+ +           I  D+R + P E F A++G  +DGH+F+
Sbjct: 1   MPVSATLSQLVEILSASSVNLSASALTKVSKSIQTDTRILQPGEVFVALRGEKFDGHEFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   +V+      +     PV  V D L A  ++    R      +I +TGSV
Sbjct: 61  AMAIVKGAIAAIVDYAYENPV----FPVLQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L++  + +   G++NN IGVP TL  +  + DF + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLATKGQVHKTYGNFNNEIGVPKTLLELGAEHDFAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP I VIT +  AH+   S  E IA AK E+   +       LNYD     LL  
Sbjct: 177 LTQIARPTIGVITNVGTAHIELLSSEEAIAEAKCELLAEMPNDSVAILNYDSP---LLME 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +       + S+G S   D Q +            V++ G  +       G H A N L
Sbjct: 234 TAKKFWQGKVISYGFS-GGDIQGKLIDNE------TVEVAGIGLP--LPLPGRHNATNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D  + ++A  + +   GR +R+          ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLEIDWQS-LQAGVIVNMPNGRSQRFTLP---NDVIILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALK 415
            +L+ I      R+IAVLG M E+GE SQ  H  + E++     +   + +       + 
Sbjct: 341 QLLADIP---GKRKIAVLGVMKELGERSQQLHQQVGEMVQKLNLDGLLLLVDSKDAEFIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++  + I      T   L   +++ +  GD ++ K+++S G  R++N L  E 
Sbjct: 398 NSA-KGIPCECFATHADLIARLKTFMQAGDRLLFKAAHSVGLDRVVNQLRLEL 449


>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
           [Bifidobacterium bifidum PRL2010]
 gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 513

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 224/507 (44%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 1   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATI 110
           GHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR    +  T+
Sbjct: 60  GHDFVARAGESGAVVALVQHEVDAPVAQIVVPDTV--DALGLLAKANIAARRAVGTPFTL 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G S
Sbjct: 118 IGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN DD+
Sbjct: 178 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 237

Query: 231 FFELLKAKSHALGIKTIYSFGKS---------------KNADFQLRKWKQCSEQSWMEV- 274
               +   +       ++ FG +                +A F         ++    + 
Sbjct: 238 HVAAMAPLAPQ---GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 295 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 354

Query: 335 NQG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEGIG 414

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 415 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 474

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 475 ALAGDHDDTVVLLKGSHASGLSALAQR 501


>gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
 gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
          Length = 466

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 131/453 (28%), Positives = 206/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+   V  G  + +V   + A     
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG  +  D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKS---HQIMSFG--EGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   ++  +K L   
Sbjct: 262 TEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
 gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
          Length = 458

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 216/463 (46%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   L +   G  +  G       + I+ D+R+I   + F A+KGP++DGH+++  A +K
Sbjct: 4   SLQALAERFGGEIVYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVATRK 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V T       +L +P + V D   AL +L +A+R +    +I +TGS GKTT K
Sbjct: 64  GAAAAIVET----PNTNLDLPQWCVGDSYKALGELGLASREKFNGKVIGVTGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML    S    T A  G+ NNHIGVPL+L R+  +  F + E G S   EI++L  L++
Sbjct: 120 GMLAAICSLAGSTVATRGNLNNHIGVPLSLMRLANEHQFAVIEAGTSGPNEIKYLAELIQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++  I P H+  F  +E IA  KA ++ GL + G   LN   +    L        
Sbjct: 180 PHVAIVNNIMPVHVEGFGSVEAIAIDKAHLYRGLVEGGVGVLNVASAQQPTLLDALQGKK 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I         + A+ +++  +Q +   +     ++G+ +E+    +G H   N L     
Sbjct: 240 ITRFNPELTDEAAEVRVQNIEQDTFGRAEFSAIIEGEEVELKLGVLGAHNVANALAAASA 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   V+   + L  +   +G   R + A      T+ID++YNA+P S+KAAI   +Q
Sbjct: 300 ARAVGISVELIKRGLEKYTGDKG---RMQLARVNEKLTVIDDTYNASPGSVKAAIDYAAQ 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                  R   VLGDM E+GE+  S H ++        I  +W +G              
Sbjct: 357 FE-----RSAIVLGDMGELGEMRNSAHEEIGRYAQQKQIKQLWCTGEASRFTAQGY--GP 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H  + E  + L   +        VV+VK S S    +++N LL
Sbjct: 410 HAKWFEDKEQLKQALPMLCSSEVVVLVKGSRSTRMEQIVNALL 452


>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
 gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
          Length = 458

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 196/437 (44%), Gaps = 16/437 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +     F  ++G  +DGH F+  A ++G    VV  D    +    +    VD
Sbjct: 33  VCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDSDIPVPQSLLHWI-VD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  ++A   R    + ++AITGS GKTTT+E++  AL+ +    A IG+ NN +GV
Sbjct: 92  DTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQASIGNNNNDVGV 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +       + E+GM   GEI  L+    P IAVIT I  AH+      E IA+A
Sbjct: 152 PLTLLGVDEQHAAVVVEMGMRGPGEIERLSRCAEPEIAVITNIGTAHIGRLGSREAIAAA 211

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   L   G + +   D   +   A+  +  ++ +     + +++         +  
Sbjct: 212 KCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVALVDDANDSEHVADDLGDYNPL 271

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   + L   S        G H A+N ++ + +   L       ++         G   R
Sbjct: 272 TG-RISLGNDSYNC--PLEGRHNARNFMLAIAVARTLGVAPADLVQLK---VEVPGGRNR 325

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R     G  T++DE+YNA+P ++ AA+ +L+       GRR AVLG M E+G  S   H
Sbjct: 326 KRQI---GSLTILDETYNASPEAVFAALDLLAAQP----GRRFAVLGTMLELGTDSVGLH 378

Query: 390 IDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + +  +  N+  + +   G    A+ DA  R       ET +     +   L  GD V
Sbjct: 379 RAVIDHAATLNLDGLVVVATGAEAKAMSDASSRWPQFQQVETPEQAAEPLIEWLRPGDTV 438

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K+S      RL+ LL
Sbjct: 439 LLKASRGIALERLLPLL 455


>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
 gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
          Length = 451

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 216/473 (45%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+   T + L++ +    + I         +GI  D+R I P E F A +G  +DGH+FI
Sbjct: 1   MSWSVTLNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+ D         +PV  V + L A  KL    R R    +I +TGSV
Sbjct: 61  SSAIARGAIAAIVDDDYENP----GLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +        G+YNN IGVP TL  +  + D+ + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLGTKGNVLKTYGNYNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP I VIT +  AH+      E IA AK E+   + K     LN+D+    LL A
Sbjct: 177 LAQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNP---LLMA 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +       + ++G S   D Q              V++ G  +       G H A N L
Sbjct: 234 TAAKFWSGEVLTYGLS-GGDVQGSLVDNAI------VEVAGLRLP--LPLPGRHNATNYL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  +  + ++A    +   GR +R+          ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLGIEWSS-LQAGVSVNMPTGRSQRFSLP---NDVLILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+        R+IAVLG M E+GE S   H  + E +    +    V + G    A+ 
Sbjct: 341 QLLADTP---GKRKIAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVDGEDAEAIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    I      T   L   + + +  GD ++ K+++S G  R+++ L  EF
Sbjct: 398 RSA-EGIPSECFATHADLVARLTTFVQGGDRLLFKAAHSVGLDRVVSQLRAEF 449


>gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
 gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
          Length = 450

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/454 (28%), Positives = 203/454 (44%), Gaps = 23/454 (5%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               I     +N I+ DSR+    + FFA+ G ++D HDF+   + KGA  VV   D  +
Sbjct: 14  RLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSRGDCAS 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---I 133
             G        VDD L AL  LA A R +    +  ITGS GKTT KEML   L +    
Sbjct: 74  FSGC-----LKVDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLASILRTAHGA 128

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               A  G++NNHIG+PLTL  +       + E+GM+H GE+  LT +  P++A++    
Sbjct: 129 DAVLATAGNFNNHIGLPLTLLNLREPHRHAVIEMGMNHAGELATLTRIAAPNVALVNNAM 188

Query: 194 PAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            AH+   F+G+++IA AKAEI++GL + G   L  +D    + +A   A       +FG 
Sbjct: 189 RAHIGCGFNGVDDIARAKAEIYQGLPENGIAILPAEDDHLAIFQATVSAF---KTLTFGA 245

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +   D         +  S  ++   G    V     G H   N      +          
Sbjct: 246 TVG-DVHAENIALEALSSTFDLVYNGNRQAVQLPVAGKHNISNACAAAALAIAGGLRQPE 304

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L+ F   +GR +R           ++D++YNANP SMKAA+ VL+++       R+
Sbjct: 305 IARGLAAFSNIKGRLQRKNGIRQ---TLILDDTYNANPDSMKAALDVLAKLPAP----RV 357

Query: 373 AVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
            V+GDM E+GE  +   H ++        I + +  G + +   +      +  +    D
Sbjct: 358 FVMGDMGELGEDEAPKMHEEIGIYARDLGIEYAYFVGDNSVQAAEKF--GGNGLWFADKD 415

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            L   +   L +   V+VK S       ++  LL
Sbjct: 416 PLIQVLAHDLPERASVLVKGSRFMQMEEVVAALL 449


>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus
            DSM 2032]
 gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus
            DSM 2032]
          Length = 1011

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 118/485 (24%), Positives = 192/485 (39%), Gaps = 26/485 (5%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            W    LL A  G   G      +  +  DSR + P + F A+KG  +DGH +I  A ++ 
Sbjct: 523  WNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQR 582

Query: 65   AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
            AG +V   + +       +    V D L AL  LA   R        + AITGS GKTT 
Sbjct: 583  AGAIVA--EWMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITGSSGKTTV 640

Query: 123  KEMLTIALS--------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            KEM+    +         +       G++NN +G+PL+L  +       + E+GM+  GE
Sbjct: 641  KEMVASIFAEALQGSRTGMDAVLKTRGNFNNLVGLPLSLLPLEAGHRLAVVEMGMNVPGE 700

Query: 175  IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            I  L  +  P I  I  + PAHL     +  +A+AK E+F G+       +N DD     
Sbjct: 701  IARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRPEAVRVVNLDDPHVRA 760

Query: 235  LKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHM 292
               K     I    +  G+      +  +     E      + ++G    V     G H 
Sbjct: 761  QAKKFAGEQIGFAVTPSGRKFGPQVRATRPDNLGEQGMRFTLHIEGWRARVTVPVFGAHN 820

Query: 293  AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
              N +    I        +    A  +        KR       G   +++++YNANPAS
Sbjct: 821  VSNCVAAAAIAHAAGIGPEVI--AQGLQRYAPSVDKRLAVTELPGGLKVVNDAYNANPAS 878

Query: 353  MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
            M A +  ++    H   R +A LGDM E+G  S+  H  +  +++      + L+G    
Sbjct: 879  MAAGLRTVAAF-GHRGCRHLAALGDMLELGAASEDLHAGIGALVASLGYDFLALTGMQAT 937

Query: 409  FHVLALKDALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINL 463
                A   A  +  ++        +  +I     +  L  GD +++K S      +L++ 
Sbjct: 938  VMARAASAAGMKEENIRVFANPRAMADWIYPMLARGDLAAGDWLLIKGSRGMRMEQLLDE 997

Query: 464  LLEEF 468
            L +  
Sbjct: 998  LEQRL 1002



 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 110/506 (21%), Positives = 178/506 (35%), Gaps = 68/506 (13%)

Query: 4   LWTFHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T   L+QAI         G V    V  I+ DSR + P   F A++G   DG  +I  
Sbjct: 1   MITLAKLVQAIAPGANRRLSGTVLAQPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPE 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           A+ KG     V  D+   +   ++PV  VDD   AL +LA A      S+  ++AITG+ 
Sbjct: 61  AIGKGCLA--VVVDVDEGVDEWNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------PLT---------LARMPV 158
           GKTT   ++   L +       IG+ N               PLT         L R   
Sbjct: 119 GKTTCSWLIEEMLVASGFRPGVIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMA 178

Query: 159 D--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE- 215
           D  V   I E+    L + R  +   R  +A+ T ++  HL     +E    AK ++F  
Sbjct: 179 DNGVTHVIMEVSSHALQQQRLGS--TRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHK 236

Query: 216 GLEKTGTIFLNY-----DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            L++ G   +          +  LL A   +L  + +   G   + +    +  Q  E  
Sbjct: 237 HLKEQGVAVVVLGPQAEGCDWGGLLTA---SLPAEQVIRCGLHGSCEVSAHQLTQTMEGF 293

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L+G  +       G +   N+L   G+   L    D  ++ L+      GR +R 
Sbjct: 294 RCCLHLRGAEVNFASPLTGEYNVLNVLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERV 353

Query: 331 RCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           R    Q G    +   Y   P ++   +  L +++    GR + V G   +     +   
Sbjct: 354 RLPGEQIGSGPAVFVDYAHTPDALDNVLRNLKKLTT---GRLLCVFGCGGDRDRGKRPLM 410

Query: 390 IDLAEVLS---------------LYNISHVWL---SG----FHVLALKDALPRSIHVHYS 427
             +A  L+                  I  +     +G        AL +A          
Sbjct: 411 GRVAAQLADAVVVTSDNPRTEAPEAIIDEIVAGVEAGGKSRTDAWALLNAAQPVDGYTVI 470

Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451
                      S    GD V++  K 
Sbjct: 471 ADRRCAITAACSLAAPGDSVLLAGKG 496


>gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11]
          Length = 607

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/439 (28%), Positives = 210/439 (47%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +         V 
Sbjct: 199 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTNIKDKR-----VV 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 250 KVTDTIATMQNLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +   L           +   G ++N D+++  ++  
Sbjct: 370 FKAKTELLEFVDKKNT-FVCGDDEYLGKL----------DVNKVGFNENNDYKIENYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S     L GK  E+    +G H   N  + + +   +    +   K L        R
Sbjct: 419 NKGSKF--VLDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIKI----GEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENEI 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
           ++HID+   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 529 NYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIKM 588

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           +  V+++K+S       +I
Sbjct: 589 EK-VILLKASRGTALEDII 606


>gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
 gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
          Length = 458

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 214/467 (45%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L +   + + +     G      V+GI+IDSR++ P + F A+ G   DGH++I  A
Sbjct: 2   MSAL-SLSVIAERLGAPYEGAP--LAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA   +V   +        +P   V   L AL+ +  A+R  S++ +IAITGS GKT
Sbjct: 59  VANGAIAALVEHPV-----DADVPCLRVSSCLAALSDIGRASRDFSRSLVIAITGSCGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K +     +    T A  G+YNN IGVPLTLAR+  +  F I E+G +  G+I  L  
Sbjct: 114 TVKNLCRSIFTQAGPTVATAGNYNNEIGVPLTLARLDDETRFAIVEMGATRRGDIAHLCA 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP I  +     AHL  F  + ++A  KAEIF+GL   GT  LN D  +  L + +  
Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDGLGAQGTAILNLDQPWVSLWRERIA 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G  T+ S+   +  D  +   +    + S   +++ G+   V     G H   N L  
Sbjct: 234 RAGADTV-SYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + +    D+ T +  L     + G   R R        TLID+SYNANP S++AAI +
Sbjct: 293 AALATAAGLDLGTIVTGLEQAEAESG---RLRAESLGEDKTLIDDSYNANPGSVRAAIDL 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    G  + +LG+M E+GE S   H ++        ++     G  +    +   
Sbjct: 350 LAATA----GNSLLILGEMLELGEESAERHREMGARAREQGVTRFVGIGDALKPAVETFG 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +    +  T D L   +   L   D ++VK S       ++  + +
Sbjct: 406 ST--GQWYPTRDALTAALPELLEQSDTLLVKGSRGAAMESVLVAIRD 450


>gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
 gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
          Length = 466

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 201/477 (42%), Gaps = 23/477 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + +    +    I G  +          +  DSR++ P + F A+KG  +D HDFI   V
Sbjct: 4   SKMTNLQEAAGWIAGARVLGDGTQAFARVHTDSRTVEPGDLFVALKGERFDAHDFIADVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+ D+        +P     D   AL +L    R +     +A+TGS GKTT
Sbjct: 64  ARGAVAVLVSRDV-----DAGVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTT 118

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++     +  A  G+ NN IG+PLT+ R+       + ELGM+H GE  +L
Sbjct: 119 VKEMIAAIFAAAVGEDQRLATGGNLNNDIGLPLTVLRLRATHRLAVLELGMNHPGETVYL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKA 237
             + +P +AV+T     H      +E +A   A     L   G      D+    +    
Sbjct: 179 AGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAI 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A G + + SFG +  AD Q            M+V+  G + EV    +G H  +N L
Sbjct: 239 WRAAAGTRRVLSFGTAGEADVQAT-VALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       V    + L+ F   +G   R +     G   +ID++YNANP SM+AAI
Sbjct: 298 AATACALAAGVQVPAIQQGLAAFKAVKG---RLQVKHTPGGTVVIDDTYNANPDSMRAAI 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ V+GDM E+G+   +FH ++        I  +W +G        A
Sbjct: 355 DVLAGFAAP----RLLVIGDMGEVGDQGPAFHTEIGGYAQALGIEALWATGELATHAVQA 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSS----LVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                   + E    L   ++      +     V+VK S      R++  L+ + PA
Sbjct: 411 F--GAQGRHFERAADLARALEEDAGGTVAKAGAVLVKGSRFMRMERMVAALVADTPA 465


>gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58]
 gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria
           meningitidis MC58]
          Length = 455

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 208/475 (43%), Gaps = 28/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P+ A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGE----LSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           I VL+++       RI V+GDM E+GE     + + H ++        I   +  G + +
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSV 402

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EAAEKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 455


>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 476

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 202/443 (45%), Gaps = 17/443 (3%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---- 84
            + IDSR ++    F A+ G   DGH ++    Q GA   +VN     + G    P    
Sbjct: 32  HVVIDSREVSEGGLFVALHGERTDGHRYVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKG 91

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSY 143
              V+D +  L  LAV  R      I+AI GS GKTTTKEM+   L+S         G+ 
Sbjct: 92  FLVVEDTVAGLQHLAVRYRNTFSIPIVAIGGSNGKTTTKEMVAAVLASDSSAVSMSQGNR 151

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH+GVPLTL +M    +  + E+G++H  E+  L  LV P   ++T I   HL     +
Sbjct: 152 NNHLGVPLTLLQMRHSTERAVVEVGINHPNEMAMLAELVAPTHLLLTNIGHEHLEFLGDL 211

Query: 204 EEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +A A+ ++++   + G T F+N DD   E L+A +  +  +  YS  ++ ++      
Sbjct: 212 DGVAKAETQLYDYARQHGATAFINADD---ERLRAAAEGMPFRIDYSLHEAVDSLVWAED 268

Query: 263 WKQCSEQ-SWMEVQLQGKSMEV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                +      +  +G+S +     H  G H   N +    +       +    + L+ 
Sbjct: 269 VTVERDGRLSFLLVTKGRSEQERLRLHFTGRHNVLNAVAAATVGLQFGISLHHICEGLAG 328

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             P  G  +     +  G   L++++YNAN  SM+ AI  L  +     GRRIAV+GDM 
Sbjct: 329 LQPAPGWKRLEVVEV--GGVRLLNDTYNANSDSMRRAIDALCDMP--CNGRRIAVVGDML 384

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G+ ++  H  +A  +    ++ ++  G    A+    P   +  YSE    L   +  
Sbjct: 385 ELGDAAEVEHQAVAHYIQRSLVTKLFTFGTQAAAICRHAPELCYGSYSE-HSALLDDLLH 443

Query: 440 SLVDGDVVVVKSSNSCGFYRLIN 462
            L +GDVV+VK S       +++
Sbjct: 444 VLSEGDVVLVKGSRGMRLELIVD 466


>gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
 gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
          Length = 454

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 217/474 (45%), Gaps = 30/474 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            L T  D+L       IG      ++ +S D+R++     F A+ G  +D HDF+  A Q
Sbjct: 5   ALTTLQDVL---NAELIGQ--DVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVETAKQ 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  ++V+      +  + +P   V D   AL +L    + +     IA+TGS GKTT 
Sbjct: 60  NGASALLVSK-----VVDIDLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCGKTTV 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS   +T    G++NN IGVPLTL R+    D+ + ELG +H+GEI + T LV
Sbjct: 115 KEMLAAILSQKGQTLYTAGNFNNDIGVPLTLLRLTPFDDYAVIELGANHIGEIAYTTSLV 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A++T +A AHL  F  ++ +A AK EIF+GL   G   +N D +  +     + AL
Sbjct: 175 KPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDFW---TPAL 231

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             K + +     K AD++              ++        V     G H   N ++  
Sbjct: 232 EGKQVLTMTVTGKPADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVANAVLAA 291

Query: 301 GIVSILT--ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + +     +D  ++ L    P +GRG     +  +    LID+SYNA+ A+MKAA+ 
Sbjct: 292 IAATKIDSRVTMDDVVRGLGSVSPVKGRG---AISFPRPGLRLIDDSYNASLAAMKAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L       +G +I VL DM EMGE + S H D+A  LS  +I  V   G     + +  
Sbjct: 349 LLDSF----DGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLTYGLASAVISER- 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                  + E    L   +   +       V+VK +N      ++  + E    
Sbjct: 404 ---CGGQHFEDKSALIAHVVKLMNTKREVSVLVKGANGMKMSEVVAAIEEAAKC 454


>gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 186/458 (40%), Gaps = 30/458 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR +AP   F A+ G   DGHDF   AV  GA  V+   ++     ++ +P    + 
Sbjct: 2   EFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREV--DAPAVIVPPVPAEA 59

Query: 91  V-LGALN----------------KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             L AL                           + T++ +TGS GKT+TK+++   L  +
Sbjct: 60  TGLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLEPM 119

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T A  GS+NN +G P T  R   D    + EL    +G I  L  +  P I  +  + 
Sbjct: 120 GPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLNVG 179

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F   E +A AK E+ E L   G   LN DD     + +++ A     +   G+S
Sbjct: 180 HAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRA----RVVLVGES 235

Query: 254 KNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             A  +        + +    +     S +V     G H   N L    I   L A ++ 
Sbjct: 236 PGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGEHHVGNALSAAAIALELGATLEQ 295

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               LS         +R   A      T+++++YNANP SM+AA+  L+ ++    GR  
Sbjct: 296 VADRLSGVRRVSA--RRMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRPGRAW 353

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSE 428
           AVLG M E+GE     H ++  +    NI  + + G     +                  
Sbjct: 354 AVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGASLEGSWGEESVLVP 413

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +D     +++ L  GDVV+ K+S     +R+   L+E
Sbjct: 414 DVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 451


>gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 456

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 211/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V       +   ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALV----EHEVEGAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G E I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F  +  A         +         +     S +V  + +G H   N L
Sbjct: 235 ---GPRNILTFALADAAADFHAGELSRDARGCPSFTMASPLGSAQVQLNLLGTHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANP S+ AA+
Sbjct: 292 AAAAAACALGVSLEGIVAGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPGSINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 771

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 218/469 (46%), Gaps = 19/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-LH 59
           ++PLWT  ++ +A+ G  +   P G +     D+R++ P + FFAI+G ++D H+FI   
Sbjct: 309 ISPLWTVDEIAEAVNGTIVQRGPPGPI---CTDTRTLEPGQWFFAIRGENFDAHEFITPE 365

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              KG   V+ N             V    + L +L K+A  AR +    ++ +TGS GK
Sbjct: 366 LGHKGCVGVIGNWVCPNWDKGF---VEMGGETLTSLEKMANYARNKFHGCLVGVTGSAGK 422

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+ M+ + L S+   +   G+ NN IGV L+L  +P +V F + ELGM   GEI  L 
Sbjct: 423 TTTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMELA 482

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP I VI  +  AHL NF+ +EE+A AK EI    +      LN DD     L    
Sbjct: 483 RKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPV-- 540

Query: 240 HALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              G+K +  FG+    D +   +         + ++   + +E V    G H+AQN   
Sbjct: 541 -PHGVKKVL-FGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACA 598

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           T  +   L   +     +LS F P      R    + +    +I++ YNANP S KAAI 
Sbjct: 599 TAAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVSTKAAIE 655

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L  I    +G+R+A+LGDM E+G+     H  +  +    +   + L G   L   + L
Sbjct: 656 LLKNID--CKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFLRAAENL 713

Query: 419 P--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++ YS   + L   I   L   DV++VK S      +++  + 
Sbjct: 714 NLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVVAAIK 762


>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/525 (23%), Positives = 207/525 (39%), Gaps = 74/525 (14%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+W+   +L A  G   G   +     +S DSR+I   + F A++G  +DGH F+   V
Sbjct: 31  NPVWSLDQVLLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
           +KGA  +V+ +     +         V D L AL  LA   R++ K   ++AITGS GKT
Sbjct: 91  RKGAAGLVLESPPEEPLPVPV---VLVADTLQALGDLAHYRRMQMKGLKVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM    +   +   +     G+ NN IG+PL+L  +     + + E+GM+  GEI  
Sbjct: 148 TVKEMTAAIMEQGRGRQRVLKTRGNLNNLIGLPLSLLAVDAHHQYAVLEMGMNRFGEIAR 207

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +  + +P IA IT +  AHL+  + +  +A AK E+F G+    T+ +N DD     L  
Sbjct: 208 MAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNRDDPRVWRLAG 267

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQL-------------------- 276
           K      +   +FG+      +  + +   E      + +                    
Sbjct: 268 KLP----QRRITFGRKPGTTVRATRLRSRGEEGMSFTLTIADVTDYGGHGVSGHRVPQVV 323

Query: 277 ----------------------------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                                        G    V    +G H  QN L    +      
Sbjct: 324 ASGPAPRTSVRKPGRSPQDAVPCDRLLADGWQGRVHIAALGEHNVQNALAAAALALAAGV 383

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                +   +         KR R         LID+SYNANP+SM AA+  +  +  +  
Sbjct: 384 SPAEIV---AGLEGYRPFAKRLRIQPFVAGLKLIDDSYNANPSSMLAALETVHNLRRN-- 438

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHV 424
            + +A+LGDM E+G    + H  + E ++     ++   G        A  R    +  V
Sbjct: 439 RKVVAILGDMLELGSHGPAAHRFIGEQVARLGFDYLLTVGEFAGETARAARRAGMDAGQV 498

Query: 425 HYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRLINLL 464
                   +  ++  +     L + D+V++K+S       +I  L
Sbjct: 499 RACLDKKEVGAWLLEATAKGRLKNDDLVLLKASRGMQMETIIEAL 543


>gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
 gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
          Length = 467

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 205/479 (42%), Gaps = 38/479 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + Q + G  IG      V  ++ D+R       FFA+KG H+D H ++  A
Sbjct: 1   MIKLTT-KQVAQILNGQLIG-DEYLVVETVNTDTRQAVENGLFFALKGNHFDAHHYVDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +G   +VV   M+ +      P   V D   AL +LA   + +     IAITGS GKT
Sbjct: 59  IAQGCIALVVEQRMLINA-----PQIIVADTRLALGELAKWLKAKLNPKTIAITGSSGKT 113

Query: 121 TTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +     +     G+ NN +GVPLTL R+     F + ELG +HLGEI 
Sbjct: 114 TVKEMAAKILQKLTACADEVLYTSGNLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   V+  +A AHL  F  +  +A AK EI+ GL   G   +N   S+    +
Sbjct: 174 YTTSITQPDACVVNNVAAAHLEGFGSLAGVAQAKGEIYRGLPPEGIAIINQA-SYSSAWQ 232

Query: 237 AKSHALGIKTIYSF-----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +   +G + + SF      + K  DF           S   +      +E+    +G H
Sbjct: 233 TE---IGSRKVQSFALYPSAEHKPVDFSAENVHLHLNGSTFMLHSPQGEIEINLPYLGEH 289

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L    +V  + AD+      L      +GR           +  LID++YNAN  
Sbjct: 290 NVSNVLAASALVMAVGADLAAIKAGLEQPVAVKGRLCPLPINR---YCLLIDDTYNANVD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SMK+A+ VL          RI  + DM E+G+ S + H ++A+ +    +  V   G   
Sbjct: 347 SMKSAVQVLKNYQAF----RIFAVADMGELGKDSVACHQEVADFVREAELDLVVSFGKES 402

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD------VVVVKSSNSCGFYRLINLL 464
             +      +   H+      +  F+   ++         V++ K S S     LI+ L
Sbjct: 403 AVIS-----NQSTHHFTDKQAMHNFLMPIIMQKIAEKQPLVLLAKGSRSQKMETLISSL 456


>gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
 gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
          Length = 470

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 191/465 (41%), Gaps = 18/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +++  +    I G ++          IS DSRS  P + F AIKG  +D HDF+     +
Sbjct: 3   MFSLREAAALIPGSTVLGDDSVAFERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                + +     +    ++P   V D    L  LA   R +    ++A+TGS GKTT K
Sbjct: 63  NVTAALASR----TPQDWNVPTLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSDLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +AV+      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGIAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F  +          K     + + +      +EV    +G H A N L   
Sbjct: 239 G---NRIMDFALNSAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +D   + L  F   +GR +  +  L      T+ID++YNANP SM+AAI V
Sbjct: 296 SAALAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAPRPAP----RVLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMGDASRDACAAY- 410

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
              + H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 411 -GANAHHVADVGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 454


>gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
 gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
          Length = 461

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/480 (26%), Positives = 214/480 (44%), Gaps = 40/480 (8%)

Query: 5   WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHY--------- 51
           ++  ++ + + G  I I      + FV+ +  DSR I     F  I              
Sbjct: 3   YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DGH FI  A++ GA     +      I   S+P+  V D   AL  LA     +
Sbjct: 63  YTIAEKDGHKFINSALKNGAVASFADH-----IVQTSLPLILVSDTQLALWALAKNYLNK 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+TGS GKTTTK+++   LS   K +  + S NN IGVP T+  MP D +  + 
Sbjct: 118 INPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTEIAVI 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+GM HLG++  L+ ++ P+IA+IT I  AH+  F   ++IA AK EI +GL+K GT   
Sbjct: 178 EMGMDHLGQLTALSKMLEPNIALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDGTFIY 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + D+    LLK ++     + + +FG+ ++ +F + + +         +  +        
Sbjct: 238 DGDEI---LLKERADLFSGEKV-TFGEKESNNFWVSQIEDKK-----RLSFKVNQETYSV 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G   A N    + +         T  +        +    R +        T+I + 
Sbjct: 289 NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITK---NRLQLLTGSKGETIISDV 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YN+NP +   AI +L        G++I VLGDM E+G+   S H+ L   +       V+
Sbjct: 346 YNSNPTAAIKAIEILKDFPTQ--GKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVY 403

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L G  + +L  A+      +    +  L   +QSSL   DVV++K+S+     ++   L+
Sbjct: 404 LVGPIMKSL--AVKMQARWYDKAFLTDLSRDLQSSLSKNDVVLLKASHGIHLEKVEQALI 461


>gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
 gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB056]
 gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB058]
 gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB059]
 gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
          Length = 466

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 204/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+   V  G  + +V   + A     
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKS---HQIMSFG--AGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   ++  +K L   
Sbjct: 262 TEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    +   +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKTPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
 gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
          Length = 475

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 193/467 (41%), Gaps = 18/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + +++  +    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   DAMFSLREAAALISGATVIGDEYVTFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +    V++      +    ++P   V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVTAVLITR----TPQDWTVPALKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTT 121

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 122 VKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETLEL 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+      H    + +E +A   A +   L   G      DD++  + +  
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTPEGVAVFPADDAYASIWRVA 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +       I  F  +          K     + + +      +EV    +G H A N L 
Sbjct: 242 ATGS---RIMDFALNSAERITEAAVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +  +  L      T+ID++YNANP SM+AAI
Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ V+GDM E+G+   +FH ++        I  ++  G        A
Sbjct: 359 DVLASRAAP----RVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRDACTA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 415 Y--GASAHHVADIGTLVAQLQQAGFGSTATLLVKGSRFMQMERVVDA 459


>gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
 gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
          Length = 455

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAALKGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SM+AA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALTDK 452


>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 513

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 224/507 (44%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 1   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TI 110
           GHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR  +    T+
Sbjct: 60  GHDFVARAGESGAVVALVQHEVDAPVAQIVVPDTV--DALGLLAKANIAARRAAGTPFTL 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G S
Sbjct: 118 IGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN DD+
Sbjct: 178 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 237

Query: 231 FFELLKAKSHALGIKTIYSFGKS---------------KNADFQLRKWKQCSEQSWMEV- 274
               +   +       ++ FG +                +A F         ++    + 
Sbjct: 238 HVAAMAPLAPQ---GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 295 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 354

Query: 335 NQG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 414

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 415 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 474

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 475 ALAGDHDDTVVLLKGSHASGLSALAQR 501


>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
 gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
          Length = 458

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 213/449 (47%), Gaps = 27/449 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ D+R I   + F A+ G ++DGH FI  A++KGA +V++  + + +  +  +   
Sbjct: 29  IKVINTDTREIQKGDVFIALSGKNFDGHLFIREAIEKGASIVILEQEALVN-STYKVSHI 87

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L A  ++A   R + K  IIAITGSVGKTTTKE++  +L    + +    +YNN 
Sbjct: 88  VVGSALKAYQQIANWWRNKYKIPIIAITGSVGKTTTKELIAASLGMYGQVHKTYDNYNNE 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP TL ++    D+ + E+GM  L EIR LT +++P I +IT I  AH+      E I
Sbjct: 148 IGVPRTLLKLSKHHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRLGSKEAI 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK E+   +       LN DD   ELL   +  +      ++G +K  D   +     
Sbjct: 208 AQAKCELLSEMSLDSIAILNNDD---ELLMKTAMRIWKGKTITYGLNKG-DIIGKLINDR 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  ++++G +        G H A N L  L +   L  D     K +      E  
Sbjct: 264 ------TLRVEGLNFP--LPLSGRHNAINYLAALAVTKSLNLDWKKFTKQIK----VEMP 311

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +     G   L+DE+YNA   SMKAA+++L         R IAVLG M E+G  S 
Sbjct: 312 QGRSQKNYLPGDIILLDETYNAGLESMKAALNMLKDTP---GKRHIAVLGAMKELGVNSS 368

Query: 387 SFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP-----RSIHVHYSETMDGLFLFIQS 439
            FH ++ E      I  +++        A+ + +      R+I V    + + LF  + +
Sbjct: 369 QFHREVGETAQALGIDVLYILIRDEEARAIPNGIKNIDGVRNIKVICCLSPEKLFEQLIN 428

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + +GD ++ K+SNS     L+  + + F
Sbjct: 429 DISEGDRILFKASNSVKLKSLVEQICKYF 457


>gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 485

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/498 (26%), Positives = 212/498 (42%), Gaps = 45/498 (9%)

Query: 4   LWTFHDLLQAIQG---HSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +    ++L  +Q      I  +P    Q   +   IDSR    +  F A++G   DGH+F
Sbjct: 1   MLRLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEF 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIG--------------------SLSIPVFGVDDVLGALN 96
           +  A  +GA   +V    V+S+                       ++ +  VDD   ALN
Sbjct: 61  LADAAARGARGALVRRSKVSSLTLERPYVVIDPVTGEGLERATPDTMLLIAVDDPQAALN 120

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R      +I ITGSVGKT+TKE+    L    +T     SYN+   +P+ L ++
Sbjct: 121 RLAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQRSFRTLKSPRSYNSEATLPIVLLKL 180

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D    + E+GM   GEI  L  L RP + ++T + P+HL     IE I  AK+E+ + 
Sbjct: 181 TADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSELPQA 240

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           L + G   LN DD     +   + A      + +G    AD      +    +     V 
Sbjct: 241 LPEDGFAILNIDDPRVRAMAEVTRARP----FFYGLDPAADLWADAIESRGLQGVSFRVH 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            QG  + +    +G H     L       +L  + +  I  L      EG   R      
Sbjct: 297 YQGDGLHLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGL----RSEGAQLRLLAVPG 352

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               TLID++YNA+PASM+AA+++L+++    +GRRIA+LGDM E+G + +  H  +   
Sbjct: 353 INQTTLIDDTYNASPASMQAALNLLAEL----DGRRIAILGDMLELGSIEEEAHRMVGAR 408

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +      +   G     + +   ++      V+  +  D      ++ L  GD V++K 
Sbjct: 409 AAEV-AQILIAVGQRARWIANEAQQAGLPADQVYAVDDNDAAAHLARNLLAPGDFVLIKG 467

Query: 452 SNSCGFYRLINLLLEEFP 469
           S       +++ L    P
Sbjct: 468 SRGMFMETIVSQLQAHRP 485


>gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC7]
          Length = 494

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 204/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V   +        IP   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVERVVKCD-----IPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLS 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV   G H+     A+     +  +      L   ++  L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI  L
Sbjct: 475 KGSRGMAMESLIADL 489


>gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
 gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
          Length = 485

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 143/487 (29%), Positives = 212/487 (43%), Gaps = 40/487 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVP----------------QGFVNGISIDSRSIAPQEAFFAIK 47
           +W   +LL A +       P                Q     I+ D+R+I   + F A+ 
Sbjct: 16  VWQVENLLAATKALDGHWQPATGQAESSNTSEETNKQVTSTRIATDTRTIKTGDIFLALS 75

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           G ++DGHD+I  AV +GA   +V+  +     S  IP   V+D   AL +LA   R + K
Sbjct: 76  GDNFDGHDYIDMAVSQGAIAAIVSRPI-----STDIPQLVVNDTRLALGQLASYRRQQHK 130

Query: 108 -ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T+IAITGS GKTT KEML      +  T    G+ NN +GVP+ L  +     + I E
Sbjct: 131 DLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNNDLGVPMMLLELSDHHRYAILE 190

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           LG +H+GEI + T +V+P +A I  I  AHL  F   E I   KAEI+  L  +    + 
Sbjct: 191 LGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGICQTKAEIYHTLNDSQFAIVP 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D F   L+  +       +  FG   N D          E+S  ++ +  +  ++   
Sbjct: 251 DKDDFTNQLRRIAEKH-TSHVIGFG---NTDVSASHLDVEPERSEFKLHIGNQVHDINLP 306

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L        L  D++  +  L    P +GR          G   LID++Y
Sbjct: 307 LAGEHNVNNALAAAACAHALNIDINDIVVGLENARPAKGRLNSQLL----GMHRLIDDTY 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP S++AA  VL+       G ++ VLGD+ E+G+ + S H  L   ++   I+ +  
Sbjct: 363 NANPHSVRAAAKVLAA----QTGTQVMVLGDIAELGDAAVSEHQSLGRTIATTGINVLLC 418

Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRL 460
            G +             I  H     D L  ++Q  L +       V+ K S S     L
Sbjct: 419 VGEYAPYTVAGAQEISDISAHAFTDKDSLLQYLQPYLQEPQAQPCTVLFKGSRSMEMETL 478

Query: 461 INLLLEE 467
           IN L+EE
Sbjct: 479 INALVEE 485


>gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
 gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
          Length = 466

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/453 (29%), Positives = 204/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +       
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPI-----DA 86

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 87  NIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTTEIREAAKS---HHIMSFGT--GGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   +D  +K L   
Sbjct: 262 TEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLDDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAQLPLDHIIAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
 gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
          Length = 482

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 199/472 (42%), Gaps = 24/472 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L        +   P     G+ IDSR++ P   F A  G   DG+ F   A++ GAG VV
Sbjct: 9   LQSTTGARFVAGDPDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVV 68

Query: 70  VNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +  +    +  L++     +   +D    L +LA   R R + T+I ITGS+GKTTTK++
Sbjct: 69  MTCEPTRELVDLALEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDV 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   + +A  G++N+ IG+PLT+   P D    + E+GMS  GEI  L+   +P 
Sbjct: 129 LAACLAKRYRVHATAGNFNSLIGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQPT 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--------TIFLNYDDSFFELLKA 237
             +IT +  +H+      E IA AKAEI  G+  +          + L+ +D F   +  
Sbjct: 189 FGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFIIE 248

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQL-QGKSMEVVHHGIGYHMAQN 295
                    +   G S + D      +   +     ++    G S +      G     N
Sbjct: 249 NFARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQSVPN 308

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   L        +A          G+R +         +ID+SYNA+P SM A
Sbjct: 309 ALFAAAVAHRLGVPGFEIDEAFGELQMT---GRRTQVRHAACGARVIDDSYNASPESMAA 365

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            +++ S +     G RIAVLG+M E+G+ ++  H  +    +    S +    G +   +
Sbjct: 366 GLNLFSTLP--CTGSRIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARVM 423

Query: 415 KDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            DA          V    + D L       + + D+V+VK S   G  R + 
Sbjct: 424 ADAARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLVKGSRFVGLDRFVE 475


>gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 466

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 205/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A     
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIREAAKS---HQIMSFG--AGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   ++  +K L+  
Sbjct: 262 TEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLAQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
 gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
          Length = 425

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 140/438 (31%), Positives = 216/438 (49%), Gaps = 31/438 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+I     FFA+KGP+++G++F + A+ +GA L VV+                V 
Sbjct: 16  VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEGDFPDEPRC----IRVP 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA+  RL+ KA II +TGS GKTTTKE++   LS   +T A  G+ NNHIGV
Sbjct: 72  DALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  I E+G +H GEIR L+ + +P    IT    AHL  F G+E +   
Sbjct: 132 PLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFGYITNFGKAHLEGFGGVEGVIRG 191

Query: 210 KAEIFEGLEKTG-TIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K+E++E L + G TIF+N DD   FE L   ++ +G      F     A  Q++      
Sbjct: 192 KSELYENLMERGATIFMNADDPVQFEKLAGYANCVG------FSTRNPAYMQIKNLTDGP 245

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V+LQ   + V     G +   N  ++  I        +   +AL  + P   R 
Sbjct: 246 A-----VRLQVDDVVVQTQLTGRYNFSNCAVSACIGKHFGVPAEAIAEALESYIPANNRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +       +G   ++ ++YNANP SM AA+  L+++      R+IA+LGDM E+G  + +
Sbjct: 301 QLIE----RGNLRILLDAYNANPTSMAAALENLAEMDSP---RKIAILGDMFELGAEAAA 353

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DV 446
            H  +       N   ++L G H      ALP +           L   ++++ + G   
Sbjct: 354 EHEAVGRFALSKNPEKLYLVGQHF--YDTALPAAR----FPDFAALSRELKANPLTGPAT 407

Query: 447 VVVKSSNSCGFYRLINLL 464
           V++K S      R++  L
Sbjct: 408 VLIKGSRGMALERVLEFL 425


>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 476

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 219/466 (46%), Gaps = 24/466 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W+   +    QG  +   P   ++GI+ DSR + P++ +  I G   DGHDFI  A   G
Sbjct: 18  WSVEAVAAITQGKVVH--PGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANG 75

Query: 65  AGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+ ++D   A  G +   + GV D   A+  LA A R R    ++A+TGS GKTTTK
Sbjct: 76  AAAVLCDSDHLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTK 135

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   +T    G++NN +GVPLTL ++    +  + E+GM+H GEI      VR
Sbjct: 136 DLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGEVR 195

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI VIT I  AHL N    E    AK EIF  +EK     +N DD +   + A+ +   
Sbjct: 196 PHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDIALINGDDPYLRRIVARDY--- 252

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +   G    +AD +    ++     + E       +       G H   N L+ + I
Sbjct: 253 --RVVRVGIREPDADLKAEAIREDLSGLYFEAD----GVPFHFKWPGIHNVYNCLIAIWI 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D       L  F P   R +        G    ++++YNANP SM+AA+  +  
Sbjct: 307 GRYYHLDDAAIQAGLDAFVPSGNRMQMAEV----GGLRFVNDAYNANPESMRAAMDTVCA 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++   EGR+IAVLGDM E+GE ++++H  + E     ++  +   G     L +    + 
Sbjct: 363 VA---EGRKIAVLGDMLEIGENAEAWHRAVGEYAGT-HMDVLIGVGEWAETLCEGARGAA 418

Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             H    + T+D     +      GD V++K+S+S    R+I+ + 
Sbjct: 419 PNHPAVAAATVDAAAQILGEIAQTGDTVLIKASHSLALDRIIDRIK 464


>gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
 gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
          Length = 438

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 129/447 (28%), Positives = 197/447 (44%), Gaps = 22/447 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++    
Sbjct: 4   ENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                V D L AL KLA A R      +  ITGS GKTT KEML   L          A 
Sbjct: 63  ---LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT +  P++A++     AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI+EGL   G   +  +D+     +A +  L  +   +FG +   D 
Sbjct: 180 GFDGVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNAQ---TFGVASG-DI 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                +        ++    + + VV    G H   N +    +       +      L 
Sbjct: 236 HAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLK 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMK AI VL+ +       RI V+GDM
Sbjct: 296 NFSNIKG---RLNIKQGIKGATLIDDTYNANPDSMKVAIDVLAAMPAP----RIFVMGDM 348

Query: 379 CEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE  + + H ++        I   +  G + +   +         +    D L   +
Sbjct: 349 GELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAAETF--GAEGLWFADKDPLIQVL 406

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
              L +   V+VK S       ++  L
Sbjct: 407 SHDLPERATVLVKGSRFMKMEEVVEAL 433


>gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 224/507 (44%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 7   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 65

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TI 110
           GHDF+  A + GA + +V  ++ A +  + +P     D LG L K  +AAR  +    T+
Sbjct: 66  GHDFVARAGESGAVVALVQHEVDAPVAQIVVPDTV--DALGLLAKANIAARRAAGTPFTL 123

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+G S
Sbjct: 124 IGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN DD+
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243

Query: 231 FFELLKAKSHALGIKTIYSFGKS---------------KNADFQLRKWKQCSEQSWMEV- 274
               +   +       ++ FG +                +A F         ++    + 
Sbjct: 244 HVAAMAPLAPQ---GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 300

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 301 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 360

Query: 335 NQG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 421 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 480

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 481 ALAGDHDDTVVLLKGSHASGLSALAQR 507


>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 436

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 217/461 (47%), Gaps = 29/461 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + + G  + +     +N   IDSR +   + F  +KG + DGH +I  A++KG
Sbjct: 1   MDLAQLKKIVNGEFLNLKENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +    G        V D   AL ++    R + KA +I ITG+ GKT+TKE
Sbjct: 61  AVGYFSEKPLNFKNG------ILVKDTYQALVEVGKHKRNQVKA-VIGITGTSGKTSTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS++  TYA  G+YNN IGVPLTLA +P ++D  I E+G   +G+I +L  +V  
Sbjct: 114 LMNFVLSNLASTYATQGNYNNEIGVPLTLANIPENIDLTIIEMGAGKVGDIDYLGKMVNQ 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+V+ ++   H+  F   E +   K EIF             D  +  L          
Sbjct: 174 DISVLVSVGHGHVGKFGSFENVIKGKGEIFN----------CGD--YSVLPSELKKFYNP 221

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   ++G  ++ D ++R  K   + +   ++ +   +E+        + +N+    G++ 
Sbjct: 222 KNPITYG--EDGDIEIRDIKIVKDGTVGVIKYKNDKIELKIPVYNIGVFKNIGAVAGVLY 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D    ++ L  F    GRG+     +N G FT+ID+SYNANP S+K AI +L+ + 
Sbjct: 280 HFGYDPIKNLEVLKDFKSSSGRGE----IINIGNFTIIDDSYNANPLSVKNAIDILNSM- 334

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              EG +I VLGDM E+G+ SQ  H ++ + L++  I ++ L G     + + +     V
Sbjct: 335 ---EGFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGNETKYVFEEIDDKSRV 391

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  DG+   I        VV+VK S       +I  L 
Sbjct: 392 KHFDNKDGIVEDILKFSNYQPVVLVKGSRGMKMEDVILKLR 432


>gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
           algicola DSM 14237]
 gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
           algicola DSM 14237]
          Length = 436

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 211/439 (48%), Gaps = 28/439 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + IS D+R +     FFA+KG ++DG+ +   A++ GA   V++ +  A   +      
Sbjct: 25  FSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDAT----I 80

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DVL  L +LA   R   K  +IA+TGS GKTTTKE++   L +  KT A +G+ NNH
Sbjct: 81  LVPDVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVGNLNNH 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL  +  D +  I E+G +H  EI FL ++  P    IT    AHL  F   E +
Sbjct: 141 IGVPLTLLAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGYITNFGKAHLEGFGSFEGV 200

Query: 207 ASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K+E+++ L+K    IF N DD     L+A   +  I     FG S+  D      + 
Sbjct: 201 IKGKSELYDYLQKDEKPIFFNADDE----LQANKLSNYINK---FGFSET-DSHYYNIQL 252

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                ++++  + + +  V + IG +   N    + +       +D     +  + P   
Sbjct: 253 KEADPFVQIIFENQEI--VSNLIGAYNFINCCAAIIMGKYFNVSIDQIKNGIERYIPSNN 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N+    +I ++YNANP+SMKAA+   S++      ++I  LGDM E+G  +
Sbjct: 311 RSQVLTQNTNE----IILDAYNANPSSMKAALDNFSKLKTT---KKIVFLGDMFELGSTA 363

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +AE+ S  N +  +L G +       L         ++ + L +F++++     
Sbjct: 364 PEEHQHIAELTSALNFTEAFLIGENFDVTTSDLKT------FKSFNELAVFLKTNTFKDA 417

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      R+++LL
Sbjct: 418 SILIKGSRGMALERVLDLL 436


>gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
 gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
          Length = 447

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 136/438 (31%), Positives = 204/438 (46%), Gaps = 35/438 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-PVFGV 88
           IS DSR I P   FFA++G  +DG+ F   A++KGA   VV+   + +        +  V
Sbjct: 42  ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKADRLIVV 101

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  L  LA   R      I+AITGS GKTTTKE+++  L+   + YA  G+ NNHIG
Sbjct: 102 DDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNNHIG 161

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  DV+FGI E+G S  GEI  L  +  P+  ++T I  AHL  F G E +  
Sbjct: 162 VPLTLLAMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNIGRAHLEGFGGPEGVRR 221

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ L +  G +F+  +D     + A+   L             A+          
Sbjct: 222 GKGELYDWLARTGGRVFVPANDPVLMSMAAERETLA------------AECYPTTLADGV 269

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E                HH  G +   N+   + +      D +    A+  + P   R 
Sbjct: 270 E----------------HHLEGDYNRFNVAAAVAVGRYFGVDDERIRYAVGSYRPDNHRS 313

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           ++ R     G  TLI + YNANP+SM+A++    Q    G  R+I +LGDM E+G+ S +
Sbjct: 314 QKIRT----GQNTLILDCYNANPSSMQASLVNFRQEPLEGCTRKILILGDMLELGDWSDA 369

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            H  +  + +    + + L G H      +L  R        + + L   ++   V   +
Sbjct: 370 EHRHIISLAAEIPDARILLVGPHFAKAYRSLESRPADTTLYPSQEVLAAELRKHPVSQAL 429

Query: 447 VVVKSSNSCGFYRLINLL 464
           ++VK S+S G  RL +LL
Sbjct: 430 ILVKGSHSIGLERLADLL 447


>gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 456

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 212/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V       +   ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALV----EHEVEGAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +L +PH+ +IT    AH+  F G E I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 NLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F  +  A         +         +     S +V  + +G H   N L
Sbjct: 235 ---GHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLGSAQVQLNLLGTHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANP S+ AA+
Sbjct: 292 AAAAAACALGVSLEGIVAGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPGSINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 483

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 143/489 (29%), Positives = 220/489 (44%), Gaps = 36/489 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAIT 114
             ++GA + +V+      + S  +P   V D + AL +LA         L     II +T
Sbjct: 60  TAEQGATVAIVD----HEVESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GE
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGY 290
           +      L    +  FG   + + ++R     +++S    +  V   G    V     G 
Sbjct: 236 MA----GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGR 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNAN 349
           H   N L    +        +T  + L+  H              +G  FTLID+S+NAN
Sbjct: 292 HNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNAN 351

Query: 350 PASMKAAISVLSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P SMKA ++ L   + +      R+A+LG M E+G    + H  +    +   I  +   
Sbjct: 352 PDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAV 411

Query: 408 G----FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           G     H+ AL  AL              VH  +  + L + +  +     VV++K S++
Sbjct: 412 GSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVVDLARN-HPDAVVLLKGSHA 470

Query: 455 CGFYRLINL 463
            G   L   
Sbjct: 471 SGLSALAER 479


>gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
 gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
          Length = 466

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 204/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A     
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAEIREAAKS---HQIMSFG--AGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   ++  +K L   
Sbjct: 262 TEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 452

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+    +       V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLLMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE   +  H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAVMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
 gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
          Length = 433

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 212/438 (48%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R+I P   FFA+KG  +D + F   A++ GA   +++ +   +          V 
Sbjct: 17  VCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEAYQTNERC----LLVS 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL  LA   R +    ++ +TGS GKTTTKE++   LS   KT+A  G+ NNHIGV
Sbjct: 73  DVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYKTFATRGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +  +++  + E+G +H  EI FL  + +P   +IT I  AHL  F G E +   
Sbjct: 133 PLSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLITNIGMAHLDGFGGFEGVKKG 192

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           KAE+F  L+  +G  F+N ++ +   +  K+    +  +  +G   +     +  K    
Sbjct: 193 KAELFAYLKQHSGFAFINRNNPYLLEMSEKAQ---LSKVVYYGTESSNTVAGKLLKTDP- 248

Query: 269 QSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             ++E+  Q K+ E     +  G +  +N+L  + I              LS + P   R
Sbjct: 249 --FIELSWQSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVEINAGLSGYFPNNNR 306

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  + A N    T+I + YNANP+SM AA++ +  +       +  ++GDM E+GE S 
Sbjct: 307 SQLTKTASN----TVICDFYNANPSSMAAALTNIELLK---GSNKTVIIGDMFELGEESA 359

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H+++ E     +I+ +   G H    K    ++   H+  T      F++++ +   +
Sbjct: 360 KQHLNIIEQAEKLDIATLIFIGKHFYHAK----QNHKGHFFATPAEAAAFLKTNPLKNAL 415

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      +L+ LL
Sbjct: 416 ILLKGSRGMALEQLMPLL 433


>gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 469

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 135/474 (28%), Positives = 217/474 (45%), Gaps = 28/474 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   LL+A QG+ +    P   +  I  DSR     +AF A+KG  +D H FI    ++
Sbjct: 14  WTAAQLLEATQGYWLNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V+  + A      +    V D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVSQPIDAE-----VCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS I  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + ++LV
Sbjct: 129 KEMLGSILSRIAPTLVTRGNLNNDLGVPVMLLELHPEHQYAVMELGASHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  I  AHL  F G + I  AK+EI+  +   GT  +   D F + ++    A+
Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIR---QAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + SFG     +    + +  ++ +  ++       +V     G H  QN       
Sbjct: 246 QTEQVLSFG--AGGEIFATEIELQAQSATFKLNTPQGVRQVNLPFAGEHNVQNATAAAAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L      +GR    +    QG   LID++YNANP SM+AA  VL+Q
Sbjct: 304 ALAIGISLDDIVLGLEQAVGAKGRLNFIQ----QGRHLLIDDTYNANPTSMRAAAEVLAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPR- 420
                EG R+ V+GD+ E+G  +   H  L  +++S+  ++ V   G    A ++     
Sbjct: 360 ----QEGVRVMVMGDIGELGSSAAQQHYMLGRDLVSVKGLNFVVAVGEFAPAAQEGARST 415

Query: 421 --SIHVHYSETMDGLFLFIQSSL---VDGDV-VVVKSSNSCGFYRLINLLLEEF 468
                +    T +    F+ S +       +  + K S       L+  L+E+ 
Sbjct: 416 QYGKKMQAFLTQEQALPFLLSLIETHQPQSMSFLFKGSRYTHMETLMADLMEKL 469


>gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
 gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
          Length = 468

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 208/472 (44%), Gaps = 27/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L++A QG+      P+  +  I  DSR     +AF A+KG  +D H+F+   + K
Sbjct: 14  WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNK 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +   +         V D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPLDLDMM-----QLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  +  AHL  F G E I  AK+EI+  + K GT  +   D F + ++   HA+
Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG  +  D    +    ++ +   +       EV     G H  QN       
Sbjct: 246 QTTQVLSFG--EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L +    +GR        +      ID++YNANP SM+AA  VL+Q
Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGRLNFI----SHKQHLFIDDTYNANPTSMRAAGEVLAQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
            S    G ++ V GD+ E+G+ +   H  L   L   +I+ +   G    A  +      
Sbjct: 360 QS----GIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFLIAVGEFAPAALEGARSTQ 415

Query: 421 -SIHVHYSETMDGLFLFIQSSL---VDGDV-VVVKSSNSCGFYRLINLLLEE 467
               +    T      F+ S +       +  + K S       L+  L+E+
Sbjct: 416 YGKKMQAFLTQAQALPFLMSLVETHQPQSMSFLFKGSRYTHMETLMADLMEK 467


>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
 gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
          Length = 485

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 129/487 (26%), Positives = 213/487 (43%), Gaps = 31/487 (6%)

Query: 6   TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  D+ +   G  +      +  V G + DSR + P   + A+ G  +DG DF ++A+  
Sbjct: 4   SASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALDA 63

Query: 64  GAGLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  ++V      ++          +  V+D   A   LA A R R   ++IAITGS GK
Sbjct: 64  GAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK ++   L+      A  G+ NN +GVP TL R   D  F + E+GM   G+I  L 
Sbjct: 124 TTTKNLVRDVLARAGSVVATQGNQNNELGVPATLLRAEEDTQFVVVEMGMRGRGQIESLC 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAK 238
             VRP +A++T +  +H+      + IA AKAEI  G++   G  F+N  D F  +L A 
Sbjct: 184 RFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKANTGIAFINASDDFASMLPAY 243

Query: 239 --SHALGIKTIYSFGKSKN-ADF-----------QLRKWKQCSEQ-SWMEVQLQGKSMEV 283
             +   G++ ++  G  K  A +                +      +   +     +  V
Sbjct: 244 GSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIELDEAGCARFTLHTPTGTASV 303

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N      + S +       + AL      +GRG+  R A       ++D
Sbjct: 304 HLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATSLDGRGRVVRTAS---GVVVVD 360

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++YNANP SMKA++   + +  H  GR IAVLGDM E+G+ ++  H  +  +++   I  
Sbjct: 361 DAYNANPDSMKASLGSFAAM--HFAGRHIAVLGDMGELGDTAEEAHARIGSLVASLPIDL 418

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +   G     +  A   +                   + S +  GD ++VK+S+S G   
Sbjct: 419 IICVGSLACGIARAAVAAGMPEDAAICVTDASAALDQVVSLVNAGDGILVKASHSVGLEA 478

Query: 460 LINLLLE 466
           ++  L++
Sbjct: 479 VVKGLVK 485


>gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M13399]
          Length = 452

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 208/472 (44%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGVDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 423

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 205/439 (46%), Gaps = 21/439 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G     +  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVD 443
            +      L   + + L +
Sbjct: 405 EHFADKAALIARLHALLQE 423


>gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
 gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
          Length = 611

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 123/439 (28%), Positives = 210/439 (47%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +         V 
Sbjct: 203 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTNIKDKR-----VV 253

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 254 KVIDTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 313

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 373

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +   L           +   G ++N D+++  ++  
Sbjct: 374 FKAKTELLEFVDKKNT-FVCGDDEYLGKL----------DVNKVGFNENNDYKIESYEFS 422

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S     L GK  E+    +G H   N  + + +   +    +   K L        R
Sbjct: 423 NKGSKF--VLDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMR 478

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 479 FQEIKI----GEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENEI 532

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
           ++HID+   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 533 NYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIKM 592

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           +  V+++K+S       +I
Sbjct: 593 EK-VILLKASRGTALEDII 610


>gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
 gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
          Length = 609

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 212/441 (48%), Gaps = 35/441 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LVV +   +         V 
Sbjct: 199 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVVADNTNIKDKR-----VV 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 250 KVIDTIATMQDLATKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +   L           +   G ++N D+++  ++  
Sbjct: 370 FKAKTELLEFVDKKNT-FVCGDDEYLGKL----------DVNKVGFNENNDYKIESYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S     L GK  E+    +G H   N  +T+ +   +    +   K L        R
Sbjct: 419 NKGSKF--VLDGKEYEMSL--LGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIKI----GEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENEI 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
           ++HID+   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 529 NYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIKM 588

Query: 443 DGDVVVVKSSNSCGFYRLINL 463
           +  V+++K+S       +I L
Sbjct: 589 EK-VILLKASRGTALEDIIKL 608


>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Brevibacillus brevis NBRC 100599]
          Length = 460

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 201/468 (42%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+          +G  I   P   ++ +  D+R +     F A+ G   DGHDF+L A
Sbjct: 1   MKPI-ALDQAAINAEGILIAGSPGLALSSVHFDTRELTVGSLFVALTGGARDGHDFLLQA 59

Query: 61  VQKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            ++GA   +V+              +  V+D L    KLA A R       IAITGS+GK
Sbjct: 60  AEQGAVAALVSNQEKIPGDLPNDFGLILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT K+++   L+S    Y    ++NNHIGVPL+L +M  +    + ELGM+H GEI  L 
Sbjct: 120 TTVKDIVAHVLASRSPVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV+P I+VIT I  +H+  F   E+IA AKAE+       G + LN D  +  L+    
Sbjct: 180 SLVQPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAH-- 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLM 298
             L    +  +  ++ AD    + +     +  +V L  G+  E      G H   N L 
Sbjct: 238 --LYPGELMYYSVNEKADIWAEQIETVEGGTRFKVYLASGEYFEAFLPLHGRHSVLNALP 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + I   L  D +    ALS          R+     +     I ++YNA+P SM+AA+ 
Sbjct: 296 AVAIAKRLGMDTEQIAYALSTVQLSA---MRFEQINGKHATVYISDAYNASPVSMEAAVR 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKD 416
             +++ P     RI VLGDM E+G  S++ H  +   +         +   G     L D
Sbjct: 353 TFAELYPECA--RIVVLGDMYELGPDSRAMHAGVGASIQDIAERFELLVTIGEDSRHLHD 410

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A        +  T       +     +    + K+S     + LI  L
Sbjct: 411 AYAGKK--LHFATKAEAMAALLPLRDEKHAFLFKASKGMSLWTLITDL 456


>gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 211/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V       +   ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALV----EHEVEGAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G E I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F  +  A         +         +     S +V  + +G H   N L
Sbjct: 235 ---GHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLGSAQVQLNLLGTHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANP S+ AA+
Sbjct: 292 AAAAAACALGVSLEGIVAGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPGSINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1059]
          Length = 456

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 204/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLTTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIINEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++       E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKNSLSFECNFLEERID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDIEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y       +  + L   ++  L   D V++K SNS    +L+  L +
Sbjct: 405 KVQYFIKNDEKDQFEQLKQAVREKLTPADQVLLKGSNSMNLAKLVEDLED 454


>gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
 gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
          Length = 909

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 193/441 (43%), Gaps = 27/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR++   E F AIKG ++DGHDF+      GA +               +  F VD
Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFLETIDCIGAIV-------SKPNPKAKVRQFIVD 545

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYACIGSYNNH 146
           D   A+  +A A R +    +IA+ GS GKTT KEM+   L   +     +A  G+ NNH
Sbjct: 546 DTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAYFATRGNLNNH 605

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP +L  +  +    +FELGM+H GEI +L+ L +P IAV+T     H      +E +
Sbjct: 606 IGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVVTNAQREHQEFMKSVEAV 665

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +F+ L+  G         +  +   +S         +FG++ +           
Sbjct: 666 ARENGSVFQSLDADGVAIYPRSSPYSYIWDEQSRHCKS---ITFGEAGS--VNATNISYD 720

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           SE S   V ++ + + +    +G H  QN L  +        D       L+ F   +GR
Sbjct: 721 SEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATTLSAGIDKKYIESGLAEFKAVKGR 780

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +++     +    ++D++YNANP S+ AAI +L  ++      R  VLGDM E+G    
Sbjct: 781 LQKHIL---KDGTVILDDTYNANPDSVIAAIDILKTLATP----RTLVLGDMGEVGVDGV 833

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H ++        I ++   G      ++    + H     + D L  F+ S       
Sbjct: 834 QMHEEIGTYARENGIDNLLTLGELTKFAQEKFGDNTH---FNSHDELAKFLISLHSKS-- 888

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           +++K S      +++  L ++
Sbjct: 889 IIIKGSRFMKMEKVLEALTKD 909



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/454 (21%), Positives = 171/454 (37%), Gaps = 40/454 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            + +DSR I   + F A KG   DG +F+  A++ GA  +++  +    I  L  PV  V
Sbjct: 17  HLRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILI--EDNLDIVVLQTPVLVV 74

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++   L +LA A      SK  +IA+TG+ GKT+    ++ AL+SI    A IG+    
Sbjct: 75  KNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGTLGTI 134

Query: 147 IGVPLTL---------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +     L                   V     I  +  S +G  +     V+  IA  T 
Sbjct: 135 LPSGENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIEQGRLDSVQIKIAGFTN 194

Query: 192 IAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           +   HL     ++E   AK  +F  +GLE       N DD     +  KS A      YS
Sbjct: 195 LTLDHLDYHKSMQEYEEAKTSLFLRDGLE---CAIFNLDDMAGVRMYEKSKASRNLG-YS 250

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              +  A     + +         +QL     +V+    G H   N+L+  G++S L   
Sbjct: 251 ILSNSKAVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVLSHLNVS 310

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAAISVLSQISP 365
           V+  ++ ++   P  GR K            +    +   Y+  P ++  AI  L  +  
Sbjct: 311 VEKIVEIIATIRPVPGRLKLVDIQPFSSSRLINLPHVYVDYSHTPDALANAIKALEVVKN 370

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS 421
              G+   V G     G+  ++    +A+V S         S      +   + + + + 
Sbjct: 371 IRGGKMACVFGC---GGDRDKTKRPVMAKVASECADDIYITSDNPRTENASDILNDILKG 427

Query: 422 IHVHYSETMDGLFLFIQSSLVD--GDVVVV--KS 451
              +    +D  +  + + L     D +++  K 
Sbjct: 428 AKKYSFSHIDRAYTILHAILNASKNDTILIAGKG 461


>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
 gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
          Length = 470

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 203/470 (43%), Gaps = 18/470 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  D+L A +    +G      +  + IDSR++ P   F  I G  +DGH+F   AV K
Sbjct: 3   MTLSDILTATKAVGDVGERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +  +         PV  V D + AL  LA A R +  A ++ +TGS GKTT K
Sbjct: 63  GAAAVLADRPLTGLPDGT--PVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    L  +  T     ++NNHIG+PL++        + + ELG+S  GE+  L  +  
Sbjct: 121 ELTAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDAYWVMELGISRPGEMEPLAAIAE 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVI  + PAHL     +  +A+ K ++F  L   G    + D  + EL +A      
Sbjct: 181 PDVAVIHNVGPAHLEALGDVAGVAAEKTKLFNFLRPGGVALASMD--YPELWEAALAVFP 238

Query: 244 IKTIYSF---GKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                S    GK ++A ++ +      E      ++L    MEV     G H A+N+L  
Sbjct: 239 RVRGLSTKGQGKGRSAPYRAKYLGALPEGRGRFFLKLGELEMEVETPLTGGHFAENILAA 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                IL A        L      E R    R    QG +T+ID++YNANP SM+ AI+ 
Sbjct: 299 ATSAHILGAGEKQIAAGLETAVMPEQRFYCRR----QGCYTIIDDTYNANPLSMRRAIAA 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +        + VLG+M EMG  ++  H  L E  +      V+  G H  A+ + L 
Sbjct: 355 --AVETAQGKPLVLVLGEMREMGAHAEEEHAKLGEAAAASGARAVFYRGAHAEAVGEGLT 412

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           R          +T       + +  + G V + K S S      +    +
Sbjct: 413 RGGYAGRFAVVDTPAAFCDMLAAMDLRGGVFLFKGSRSMRMEEYLAAFTQ 462


>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 483

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 142/489 (29%), Positives = 219/489 (44%), Gaps = 36/489 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAIT 114
              +GA + +V+      + S  +P   V D + AL +LA         L     II +T
Sbjct: 60  TAGQGATVAIVD----HEVKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GE
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGY 290
           +   ++      +  FG   + + ++R     +++S    +  V   G    V     G 
Sbjct: 236 MAGLANG----DVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGR 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNAN 349
           H   N L    +        +T  + L+  H              +G  FTLID+S+NAN
Sbjct: 292 HNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNAN 351

Query: 350 PASMKAAISVLSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P SMKA ++ L   + +      R+A+LG M E+G    + H  +        I  +   
Sbjct: 352 PDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAV 411

Query: 408 G----FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           G     H+ AL  AL              VH  +  + L + +  +     VV++K S++
Sbjct: 412 GSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARN-HPDAVVLLKGSHA 470

Query: 455 CGFYRLINL 463
            G   L   
Sbjct: 471 SGLSALAER 479


>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
 gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
          Length = 448

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 133/462 (28%), Positives = 197/462 (42%), Gaps = 20/462 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+ +A  G  IG      +N +  D+R I     F A+KG  +DGHD+I  AVQ+GA
Sbjct: 6   TLSDIAKACDGELIG--EDCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQAVQEGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV +  +             V D   A   +A   R   K  ++ ITGS GKTT K+ 
Sbjct: 64  VGVVSDRVVDVPN------YVKVFDTTLAYGVIARLIRDAFKGPVVCITGSNGKTTVKDW 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L  +L + K       + NN IGVP TL  +  D D  + E G S  GEI  L  +  P 
Sbjct: 118 LAQSL-TDKNVLKTRANLNNQIGVPQTLLELDADNDVAVIEAGTSFTGEIPLLAKVAFPD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T    +H     GIE+IA  K  +  G     ++ LN DD +F+     +   G +
Sbjct: 177 IVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNASVVLNSDDEYFDYWCGLA---GDR 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +YSFG +++AD      +  +E S       G +  V   G G H   N +  +  + I
Sbjct: 234 QVYSFGFTESADLYASDIELGAESSLAMFHYDGMAQLVTIAGAGKHQIANGMAVVLAMLI 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D   A   L+      GR +R +    +    LI++ YNA+P S++AAI VLS  S 
Sbjct: 294 IGIDFKQAADKLASPVLVSGRLERLKT---KNGALLINDCYNASPKSVEAAIDVLSIQSV 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHV 424
                   +LG + E+G      H  L        IS +   G        A   +  + 
Sbjct: 351 EE---TWLILGGLAELGAQRDDIHHSLGIYAKNKGISCLICVGPVASIAGAAFRSKGGNA 407

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            Y  T +     ++  L     ++VK S S     +I  L+ 
Sbjct: 408 IYCNTHNEAATVVRP-LDKKHAILVKGSRSAKMENVIEALIN 448


>gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 468

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 209/472 (44%), Gaps = 22/472 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                +   +    +G    G  V  + IDSR + P + F  + G   DGH F   AV+K
Sbjct: 3   MELSRIATVLNA--VGEQTDGRTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+    +    G+   PV  V D   AL  LAVA R   ++ ++A+TGS GKTT K
Sbjct: 61  GAVAVLAQRPLPEVDGA---PVLLVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L++         + NN IG+PL++     + D  + E+G+S  G++  L  +  
Sbjct: 118 ELIAQTLAAEMSVAKNHKNLNNQIGLPLSMLAASGEEDVWVMEVGISRQGDMEELAPIAS 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVI  I PAHL     +  +A AKA +   + + G   +N D  + EL +A      
Sbjct: 178 PDLAVIHNIGPAHLEGLGSLRGVAEAKAHLLTSVRRGGAAIVNRD--YPELWEAAQRIFP 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S  +++ A +         +     ++L+ + +EV    +G H A+N++      
Sbjct: 236 SVRAMS-TQNEKAPYFCTYLGPSQQGGVFLLRLEDERLEVDLPFLGAHFAENVVAAASAA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L     + ++AL+     + R   +      GF TLID++YNANP SM  AI   +++
Sbjct: 295 YLLGMSAGSIVQALAKAQLPDQRFAAHHL----GFGTLIDDTYNANPLSMSRAIQAATEL 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
           + +     + VLGDM E+G  +++ H+ L E  +    + V   G    A+   L +   
Sbjct: 351 AGNRP--LVLVLGDMLELGSEAEAEHVRLGERAAASGCAAVVYRGGFAKAVARGLAQAGF 408

Query: 423 HVHYSETMDGL-FLFIQSSL-----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
              + E   G     +   L       G V++ K S S      +  L   +
Sbjct: 409 KGRFQEVRAGAELPPVLEDLGLTKEQAGTVILAKGSRSSRMEEFVTALRSSY 460


>gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis ES14902]
          Length = 452

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 208/472 (44%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P+ A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora
           bispora DSM 43833]
 gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermobispora bispora
           DSM 43833]
          Length = 455

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 202/468 (43%), Gaps = 21/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + +   G   G+  P+  V G + IDSR++ P   F AIKG   DGHDF  
Sbjct: 1   MIPL-PLARVAEITSGALNGLADPEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A   GA  V+ +  + A        V   D V    +  A         T++ +TGS G
Sbjct: 60  EACAAGAVAVLASRPVDAPA------VIVRDVVAALADLAAAVVAELPSVTVVGVTGSQG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++L      I  T A +GS+NN IG PLT+ +      F + EL   ++G I +L
Sbjct: 114 KTTTKDLLAGLTERIGPTVAPVGSHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P I V+  +  AH+  F G E IA AK E+ E L + G   LN DD +   +  +
Sbjct: 174 TRIAPPRIGVVLNVGAAHIGVFGGREAIAKAKGELVEALPEDGVAVLNADDPYVREMAGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  FG+S  A  +           +   +     S  V     G HM  + L
Sbjct: 234 TRA----RVTWFGRSAEARIRAENETLDERGRASFTLCTPSGSAPVRLRLHGAHMVPDAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V    + LS   P+     R          T+I+++YNA+P S++AA 
Sbjct: 290 AAAAVAYELGLPVVAIAEELSRAEPRSRW--RMEVTDRADGVTVINDAYNASPDSVRAAF 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L  +      RR AV+  M E+GE     + +   + +   +  + + G     +   
Sbjct: 348 AALRAM--GDGRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDDAGPILAG 405

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            P +IHV      D     + S L  GDVV+VK   + G  R+   +L
Sbjct: 406 APGAIHV---PDTDAAARELASRLAPGDVVLVKGPRAAGLERVAAAVL 450


>gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
 gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
          Length = 455

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 129/455 (28%), Positives = 194/455 (42%), Gaps = 22/455 (4%)

Query: 16  GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
             ++G  P   +  +  I+ D+R + P   F A+ G  +D HDFI  A + GA   +V  
Sbjct: 13  ARALGESPPDTEVALTSITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVER 72

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                     +P   V D   AL  L  A RL     ++A+TG+ GKTT K+ML   LS 
Sbjct: 73  RQDDP-----LPQLEVADTRLALGLLGRARRLAWGGPLVAVTGNSGKTTVKQMLATILSR 127

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              T A  G+ NN  G P+TL  +  +    + ELG +HLGEI +   L  P +AVIT +
Sbjct: 128 SGATLATRGNLNNDFGAPMTLLELDGEHRRAVVELGANHLGEIAWTASLAMPDVAVITNV 187

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             AH+  F G+  IA AK EI  GL + G   LN DD +F    +++   G + +  FG 
Sbjct: 188 TGAHVGEFGGMGRIAQAKGEILGGLSRDGVAVLNRDDRYFRFWASQA---GSREVLDFGL 244

Query: 253 SKNADFQLRKWKQCSEQSW-MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 +           +   +   G+ +  V    +G H   N L        L AD 
Sbjct: 245 EDEGRLRAETLVCDEFGRYAFTLSFDGRELGRVQLALMGRHNVANALAAAAAALALRADP 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              +  L    P  G   R      +    L+D++YNANP ++KAA+  L+ +       
Sbjct: 305 ADVLAGLEEVEPVAG---RLGVFAGRNGARLLDDTYNANPGAVKAALETLATLPAP---- 357

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           R  +LG M E+GE S  +H ++        I  +   G        A       ++ +  
Sbjct: 358 RWCLLGAMGELGEASAHWHAEVGHHARTLGIDFLGTLGEAARPASRAFGEG--GYHFDDR 415

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + L   +   L  G  V+VK S S G   ++  L 
Sbjct: 416 EALTRHVLHHLPPGASVLVKGSRSAGMEHVVTALR 450


>gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M04-240196]
          Length = 452

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+I     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALINNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGVDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 452

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 205/459 (44%), Gaps = 22/459 (4%)

Query: 16  GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
              +G  P      V G++ D+R ++P + F A+ G  +DGH+F+  A   GA   VV+ 
Sbjct: 10  ATWLGAPPPDVDAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSR 69

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            + + +         V D   AL  LA AAR      ++A+TG+ GKTT KEML   LS 
Sbjct: 70  RVASPLA-----QIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEMLAAILSR 124

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T A  G+ NN IG P TL  +       + ELG +HLGEI + T L  P +AVIT +
Sbjct: 125 VHPTLATRGNLNNDIGAPQTLLALSSAHRRAVIELGANHLGEIAWTTSLAIPDVAVITNV 184

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             AH+  F GI  IA AKAEI  GL  +GT  LN DD F+ + +  +   G   +  FG 
Sbjct: 185 TGAHVGEFGGIGRIAQAKAEILLGLSASGTAVLNRDDRFYPMWRELA---GDAEVLDFGL 241

Query: 253 SKNADFQLRKWKQCSEQSW-MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              A  +        +  +   + + G S+  V    +G +  +N L +      L    
Sbjct: 242 DPAARVRAEALACDDDGRYAFTLFVDGVSLGRVRLALLGRYNVRNALASAAAAWALRVPA 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L       G   R           L+D++YNANP +++AA++VL+++       
Sbjct: 302 EDIVAGLEACRTMPG---RMMNVPGIRGTRLLDDTYNANPGAVRAALAVLAEMPAP---- 354

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           R   LG + E+G  S+  H DL  V     I  +   G        A        + +  
Sbjct: 355 RWCFLGALGELGAESERLHADLGRVARELKIDFLGTFGADARPAVAAF--GDRGCHFDDW 412

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             L  +    L  G  V+VK S S G  RLI  L  + P
Sbjct: 413 AALVRYAHDHLPPGASVLVKGSRSAGMERLIADLRTDAP 451


>gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
 gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
          Length = 466

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 204/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A     
Sbjct: 32  IPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKS---HQIMSFG--AGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   ++  +K L   
Sbjct: 262 TEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFLQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
 gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
          Length = 451

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+   T + L++ +      I         +GI  D+R I P E F A +G  +DGH+F+
Sbjct: 1   MSWSVTLNQLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+  GA   +V+ D          PV  V + L A  KL    R R    +I +TGSV
Sbjct: 61  QTAIANGAIAAIVDDDYENP----GFPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +    +   G++NN IGVP TL  +  + D+ + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLGTKGNIHKTYGNFNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT +  P I VIT +  AH+      E IA AK E+   + K     LN+D+    LL A
Sbjct: 177 LTQIANPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNP---LLMA 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +       + ++G S   D Q              V++ G  +       G H A N L
Sbjct: 234 TAGKFWSGEVLTYGLS-GGDIQGSLVDNAI------VEVAGLRLP--LPLPGRHNATNYL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  +  + ++A    +   GR +R+          ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLGIEWSS-LQAGVSVNMPTGRSQRFSLP---NDVLILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+        R+IAVLG M E+GE S   H  + E +    +    V + G    A+ 
Sbjct: 341 QLLADTP---GKRKIAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVDGEDAEAIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    I      T   L   + + +  GD V+ K+++S G  R+++ L  EF
Sbjct: 398 KSA-EGIPSECFATHADLVARLTTFVQGGDRVLFKAAHSVGLDRVVSQLRAEF 449


>gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 103P14B1]
 gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis O35E]
 gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 101P30B1]
          Length = 494

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 204/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLS 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV   G H+     A+     +  +      L   ++  L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI  L
Sbjct: 475 KGSRGMAMESLIADL 489


>gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
 gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
          Length = 452

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 203/468 (43%), Gaps = 28/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + Q   G   G      VN ++ D+R+I P   F A++G  +D HDF+  A   
Sbjct: 1   MW-LSQVAQWTGGTLQGD--DLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTG 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ +  +   +       V D    L +LA     +     +A+TG+ GKTT K
Sbjct: 58  GAIAALVDREQDSFESA-----VRVADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVK 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L     T A  G++NN +GVPLTL R+  +  F + ELG +  GEI + + L R
Sbjct: 113 EMAAAMLG--DGTLATHGNFNNDVGVPLTLLRLRAEHRFAVIELGANAPGEIAWTSSLTR 170

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T +  AHL  F  ++ IA AKAEIF G    G   +N DDSF +    K+ A G
Sbjct: 171 PQVVLVTNVTGAHLEGFGSMQGIADAKAEIFGGCTPGGQAIINNDDSFADFFAEKARAAG 230

Query: 244 IKTIYSFGKSK----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + T+      +     AD          +++   +Q  G+++       G H   N LM 
Sbjct: 231 L-TVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAVT--VPLPGAHQVSNALMA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              V  L  ++   +  L+   P  GR          G   ++D++YNANP S++AAI  
Sbjct: 288 CAAVRALGVNLPQVLPRLAALKPVPGRMH----IQAAGAGAVVDDTYNANPGSVRAAIDW 343

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+            VLG M E+G  + S   +L E      +S +        A   A  
Sbjct: 344 LAAQPAPQM----LVLGAMGELGPQADSLVEELGEYARQAGLSGLV---AMTGAAAAARG 396

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  +E       +    L  G  V+VK S S G   ++  L +E
Sbjct: 397 YGEAAKIAEDYQQAASWSAPVLAQGGTVLVKGSRSAGMEAVVQRLTQE 444


>gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
 gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
          Length = 474

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 136/480 (28%), Positives = 221/480 (46%), Gaps = 32/480 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ QA QG  +        ++ I+ D+R++A Q  F A+KG ++D H F+ +A+  G
Sbjct: 5   TLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDNAISTG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTK 123
           A  ++V            I +  V D   AL  L+   R + K    IAITGS GKTT K
Sbjct: 65  AKALLVEQ-----ASDHDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNGKTTCK 119

Query: 124 EMLTIALSSIKKT----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           E+L+  L    +      A  G++NN IGVPLTL R+  +  F + ELG +H GEI +  
Sbjct: 120 ELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGEINYTA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV+P +A+I  I  AHL  F  +  +AS+K EI+  L+  GT  +N D  F +   ++ 
Sbjct: 180 QLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQTYLSQL 239

Query: 240 HALGIKTIYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQ----GKSMEVVHHGIGYHMA 293
            A G + I++F ++   A+F     +  +   +   + ++      +  +     G H  
Sbjct: 240 QAQG-QCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPICTGTQSISLKIPGQHNV 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   L   ++   K L+      GR  R        F T+ID++YNAN AS+
Sbjct: 299 SNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEV---NDFLTIIDDTYNANSASV 355

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KAAI+VL   S         +L DM E+G  ++  H  + E  ++ N+  +   G H L 
Sbjct: 356 KAAINVLCATSTKQA----LILSDMGELGTHTELEHQKVGEYAAMQNVPLLLAVGTHSLH 411

Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV---VVKSSNSCGFYRLINLLLE 466
             +A            +      L  FI+  L   + +   ++K S S     ++  + +
Sbjct: 412 TVEAFNLHCKGQQKAQHFANKTQLKTFIKEYLDKNEQLTTMLIKGSRSAKMEEIVAFITK 471


>gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
 gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
          Length = 461

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 128/480 (26%), Positives = 214/480 (44%), Gaps = 40/480 (8%)

Query: 5   WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHY--------- 51
           ++  ++ + + G  I I      + FV+ +  DSR I     F  I              
Sbjct: 3   YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DGH FI  A++ GA     +      I   S+P+  V D   AL  LA     +
Sbjct: 63  YTIAEKDGHKFINSALKNGAVASFADH-----IVQTSLPLILVSDTQLALWALAKNYLNK 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+TGS GKTTTK+++   LS   K +  + S NN IGVP T+  MP D +  + 
Sbjct: 118 INPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTEIAVI 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+GM HLG++  L+ ++ P+I++IT I  AH+  F   ++IA AK EI +GL+K GT   
Sbjct: 178 EMGMDHLGQLTALSKMLEPNISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDGTFIY 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + D+    LLK ++     + + +FG+ ++ +F + + +         +  +        
Sbjct: 238 DGDEI---LLKERADLFSGEKV-TFGEKESNNFWVSQIEDKK-----RLSFKVNQETYSV 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G   A N    + +         T  +        +    R +        T+I + 
Sbjct: 289 NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITK---NRLQLLTGSKGETIISDV 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YN+NP +   AI +L        G++I VLGDM E+G+   S H+ L   +       V+
Sbjct: 346 YNSNPTAAIKAIEILKDFPTR--GKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVY 403

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L G  + +L  A+      +    +  L   +QSSL   DVV++K+S+     ++   L+
Sbjct: 404 LVGPIMKSL--AVKMQARWYDKAFLTDLSRDLQSSLSKNDVVLLKASHGIHLEKVERALI 461


>gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
 gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
          Length = 431

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 207/438 (47%), Gaps = 21/438 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+S D+R I     FFA+KGP++D ++F   A+++GA LVV++              F 
Sbjct: 14  TGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVIDDPKYFIEDDER--YFL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             D L  L  LA   R +    II +TGS GKTT+KE+L   L +  KT A +G+ NNHI
Sbjct: 72  AKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +P D +  I E+G +  G+I  L  +  P    IT I  AHL    G   + 
Sbjct: 132 GVPLTLLSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFITNIGRAHLEGMGGPAGVL 191

Query: 208 SAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+F+ L    GT+F+N  D     +  +      K +         DF   +    
Sbjct: 192 KTKTELFQFLRANKGTVFINSQDPVLSNMAKRF----DKPVLY---PAKGDFC--EVGFV 242

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               +++  ++G     +   IG +   N+   L +      ++  AI+A+  + P   R
Sbjct: 243 EANPFVKFTVEGTEEVYLSSLIGAYNFGNIANALAVGKYFEVEMKGAIEAIVNYQPSNMR 302

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N     +I ++YNANP+SM+ AI    +++   +  ++ +LGDM E+GE ++
Sbjct: 303 SQLLEKRSN----LIILDAYNANPSSMEVAIRTFGEMTG--KKHKMIILGDMFELGEHAE 356

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  L E++S Y I  V  +G  +++   AL R     Y         ++Q S ++  +
Sbjct: 357 EEHAKLGEIISEYEIEKVCFTGKLIVS---ALARYPKALYFPDPFSFRNWLQDSQLEDYL 413

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S       L++ +
Sbjct: 414 ILIKGSRGMKLEGLVDFI 431


>gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 469

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 144/469 (30%), Positives = 249/469 (53%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHY-DGHDFILHAV 61
           +W+  DL  A     +G+     VNGI   +S+ I P + F A++  +  DGH F+  A+
Sbjct: 5   IWSAADLTAA-----LGVPVNVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDAL 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
            +GA  V+V+  +  +       +  V++ + AL++LA   R + K  T I ITGSVGKT
Sbjct: 60  ARGADAVIVSKLIDNNTND---KIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE++    S+  KT+A   ++NN +G+ L LA +P++ ++ IFEL     GE++ L  
Sbjct: 117 STKEIMFKVFSTHYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELCTRSPGELQKLVK 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++  +IAV+T I  AH   F+ +E +  AK EIF GL   G   +N D  FF       +
Sbjct: 177 ILPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYIN 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            LGI  +++FG  + ++ ++  +   ++  +S + +   G  ++     +GY  A N+  
Sbjct: 237 KLGINNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + +I   +++   + ++     EGRGK Y    +     +ID+ YNANPASMK A+ 
Sbjct: 297 VMLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALD 356

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L QI      R++A+LGDM E+G  ++  H++L   +  YNI HV   G  +  + + L
Sbjct: 357 LLDQIKAK---RKVAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVISIGSLMKNVYELL 412

Query: 419 PRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           P  + + +   ++ L    +   L D D V++K SN    ++++  LLE
Sbjct: 413 PAELKLSHYNNINELTVDQLLPLLHDKDYVLIKGSNRMRLWQVVENLLE 461


>gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640]
 gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06]
          Length = 452

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+      AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALANNAMRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLGLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 7169]
 gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC1]
          Length = 494

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 204/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLS 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV   G H+     A+     +  +      L   ++  L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVLTLGNHMAHTATAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI  L
Sbjct: 475 KGSRGMAMESLIADL 489


>gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis CO72]
          Length = 494

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 148/495 (29%), Positives = 206/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        + + + I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WHQDNLKQATQGQWHHSDKAEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASKF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
                 SFG+                              D      +  +  S   +  
Sbjct: 244 -TNLYLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLP 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYCIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV   G H+     A+  +     +      L   ++  L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLRQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI +L
Sbjct: 475 KGSRGMAMESLIAVL 489


>gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2]
          Length = 466

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 131/453 (28%), Positives = 203/453 (44%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A     
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + LV+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKS---HQIMSFG--AGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   +    ++     S  V     G H  QN    +     L   ++  +K L   
Sbjct: 262 TEIELLPQSVNFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
 gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
          Length = 464

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 196/464 (42%), Gaps = 22/464 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +S D+RS+ P   + A++G  +DGHDF   A  +GA  ++
Sbjct: 9   IAHWAGGEIHGD--DVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARGASALL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       +  + +P   V D   AL K+A   +   +  + AITGS GKT+ K +L   
Sbjct: 67  VER-----LLPIELPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKTSVKSLLLSI 121

Query: 130 LSSIKK-----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L  + +      YA  G+ NN IG+PL +   P D D+ ++E+G    G+I +LT + RP
Sbjct: 122 LQQVAQHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  IAPAHL     +  +A  K  I+  L   G   +N DD++    +        
Sbjct: 182 RYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQHFVGTPA 241

Query: 245 K-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +  +G    AD   R  +  ++ S   +        VV    G H   N L    + 
Sbjct: 242 RCRVLRYGLEHTADITARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAAASLA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+      L+   P  GR   ++    +    L+D+SYNANP S+ AAI  L+  
Sbjct: 302 LAAGVDLALIAAGLAEAQPVPGRQIAHQL---RNGAVLVDDSYNANPGSLAAAIDALAAA 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G      VLGDM E+G  +++ H           +  ++  G    A   A      
Sbjct: 359 PEEG----WLVLGDMRELGPDAEALHAQAGLRARASGLKRLYALGPLSAAAAAAFGEGGR 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +  T D L   ++  L  G   +VK S       ++  LL +
Sbjct: 415 --HFTTHDALSQALKDELHPGVRCLVKGSRGSAMDTIVKALLAQ 456


>gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC8]
          Length = 496

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 148/497 (29%), Positives = 203/497 (40%), Gaps = 51/497 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 Q-------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                     S+ V    IG H   N L        L   ++   K L    P +GR  R
Sbjct: 303 NIDIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMR 362

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                    + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H
Sbjct: 363 LSM----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEH 414

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG-DVV 447
             L   L+L  I HV   G H+     A+     +  +      L   ++  L  G   V
Sbjct: 415 TKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATV 474

Query: 448 VVKSSNSCGFYRLINLL 464
           + K S       LI  L
Sbjct: 475 LFKGSRGMAMESLIADL 491


>gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 470

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 20/473 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +   + G          V  I+ D+R+I+  E F AI G   DG+ F   A+  G
Sbjct: 4   MTIEQVATCVDGTISTEPADSLVTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAG 63

Query: 65  AGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA------TIIAITGSV 117
           A  V+  +     + G+    V  VDD + AL +LA       +        +I +TGSV
Sbjct: 64  AVAVLTADPAAACATGAAPERVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSV 123

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK++L   L       A  GS+NN +G+PLT+ R        + E+G  H+G + +
Sbjct: 124 GKTTTKDLLAHLLGQRGPIIAPPGSFNNELGMPLTVLRADESTSTLVLEMGADHIGNLAY 183

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT +V P ++V+  +A AHL  F GIE +A AK+E+ EG  + G + LNYDD     +  
Sbjct: 184 LTGIVAPDVSVVLAVARAHLGEFGGIENVARAKSELVEGTREGGVVVLNYDDERVRDMAK 243

Query: 238 KSHALGIKTIYSFGKSKNA--DFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +       +  F  S                + Q+   +        V    IG H   
Sbjct: 244 LAPG----KVVYFSASGACRDGVWASDVTLNKTGQASFILHYGQSESRVELKLIGAHHVA 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +  +   ++D   + L+  +              +   T+ID+SYNANP SMK
Sbjct: 300 NALAAATVALVCGIELDDCARLLTEANAGSPHRMDV---WERNGTTIIDDSYNANPDSMK 356

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-VLA 413
           A ++ L+ +  H   R+IAVLG M E+GE S++ H  + E+++   I  +   G      
Sbjct: 357 AGLTALAHLGTH--RRKIAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGPGLSPT 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  A    + VH +  +      +   L +GDVV++K SN  G +RL + L E
Sbjct: 415 ILTARQGGVEVHETLNVAEATQLLTGLLAEGDVVLLKGSNGSGVWRLADALKE 467


>gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
          Length = 452

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQALN--LPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAILRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 MATLNLNTR---TFGIDSG-DVHAENIMLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB900]
          Length = 466

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 204/453 (45%), Gaps = 24/453 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   + A     
Sbjct: 32  IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE---- 87

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +  T    
Sbjct: 88  -IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I  AHL  F
Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G + I  AK+EI+  +   G   +   D F   ++  + +     I SFG     D   
Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKS---HQIMSFG--AGGDVFA 261

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +   + +  ++     S  V     G H  QN    +     L   ++  +K L   
Sbjct: 262 TEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQA 321

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GR    + A +      ID++YNANP SM+AA  VL Q      G ++ V+GD+ E
Sbjct: 322 QGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQ----QNGIKVMVMGDIGE 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +G+ S   H DL   L+   + H+   G F   AL+ A   S  +   +T      F+ +
Sbjct: 374 LGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLIN 433

Query: 440 SLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
            +          + K S       L+  L+E+ 
Sbjct: 434 LIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 466


>gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 441

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 221/468 (47%), Gaps = 35/468 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++   +   +     G    G V G+S +SR + P + F A+   + DGH +I  A+Q+G
Sbjct: 3   YSIAKIGDILNADIQG---SGQVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V+           +P   V D L AL +L    R      ++AITGS GKTTTK+
Sbjct: 59  AAAVLVDDQHDIPND---VPAVIVPDTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    ++   KT+    ++NN IGVP+TL  MP D +  + ELGM   G++  L+ LV P
Sbjct: 116 MTAAVMAKRYKTFKTPENFNNEIGVPMTLLTMPADTEVLVVELGMDRPGQLTALSKLVVP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  AH+  F    +IA AK EI  GL+  G + + +D+         + A   
Sbjct: 176 DVAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLCIPFDEPLL------TQADVA 229

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG   +A           +          +        IG +   N L  +    
Sbjct: 230 QQVVVFGDGVSA----------VQGDATTTTFTYQETRFAIPLIGGYNIMNALAAVSAGI 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  D+D A++AL  F   + R +R   A       LI + YN+NP ++ A ++ L  I 
Sbjct: 280 LLHIDLDDAVEALQTFDLTKNRTERLVTAR---GVNLISDVYNSNPTAVAAVLATLKAIP 336

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKDALPR 420
                 +  VLGDM E+GE + + H +LA+ +   N++ V+L G    A    +      
Sbjct: 337 APH---KYVVLGDMLELGEQAATLHANLAKEILAANVTGVYLVGQLFTANTAPILAPHFD 393

Query: 421 SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S H+H  +T  +D L   +++    GDV+++K+S+      ++N L++
Sbjct: 394 SEHLHLYDTHQLDALIADLKTLGDAGDVILLKASHGIHLENVVNALVQ 441


>gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 456

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 128/467 (27%), Positives = 212/467 (45%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +     +P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVEGAA----LPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G + I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F  +  A         +         +     +++V  + +G H   N L
Sbjct: 235 ---GHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLGNVQVQLNLLGTHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANP S+ AA+
Sbjct: 292 AAAAAACALGVSLEGIVAGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPGSINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAAG-KVSAMYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
 gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
          Length = 430

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/438 (28%), Positives = 207/438 (47%), Gaps = 22/438 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S D+R+I P   FFA+KG +++G++F   A+ KGA + +V+ +  A           
Sbjct: 14  SGVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDN---YIF 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L AL +LA   R      ++AITGS GKTTTKE++   L+   KT +  G+ NNHI
Sbjct: 71  VEDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL RM    + G+ E+G +H GEI FLT +  P    IT    AHL  F GIE + 
Sbjct: 131 GVPLTLLRMDETTEVGVVEMGANHQGEIEFLTEIALPDYGYITNFGKAHLEGFGGIEGVI 190

Query: 208 SAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++  L+     +FLN DD   +   + SH      +++FG S+ A   +      
Sbjct: 191 KGKSELYTHLKNHKKLLFLNLDDEIQQRQDSYSH------VFTFGSSEKAAVSIDYTISQ 244

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +   +                 G + A N    L I            +A+  + P   R
Sbjct: 245 NGPEYASFTYNNDVF--NTQLTGQYNAYNAAAALTIGLYFKVPFKAIKEAIKEYSPSNNR 302

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N    TL+ ++YNANP SM ++I   S +  +    +  ++GDM E+G+ S+
Sbjct: 303 SQIQKTKNN----TLLLDAYNANPTSMGSSIINFSNL--NTPLSKTLIIGDMLELGQYSK 356

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + E+ +   + +V+L G H                 +    L  F+ ++ ++   
Sbjct: 357 EEHQSIVELCNSKGLKNVYLVGKHFKET----STPEEYQKFDNTTELKTFLTANPINNSY 412

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      ++I  L
Sbjct: 413 ILIKGSRGIALEKIIENL 430


>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
 gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
          Length = 467

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/480 (26%), Positives = 214/480 (44%), Gaps = 33/480 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L     +L               V  I+ D+R++ P EAF A++G  +DGH F+  A+ +
Sbjct: 7   LTQLSQILAVSLPPQCDTPQDTPVIAITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQ 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ D   +  + ++P+  V D L A   +A   R +    II +TGSVGKTTTK
Sbjct: 67  GAVCAIVDADF--TADNPNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L +    +    +YNN IGVP TL ++    ++ + E+ M   GEI  LT + R
Sbjct: 125 ELIAAVLGTQGNVHKTQANYNNEIGVPKTLLQLNSHHNYAVIEMAMRARGEIALLTQIAR 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT +  AH+      + IA AK E+   + +     LN D      L   +  + 
Sbjct: 185 PTIGLITNVGTAHIGRLGSEQAIAEAKCELLAEMPQNSVAVLNCD---HHRLMDTAATVW 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G  +  D Q              ++++G  +++     GYH A N L  L + 
Sbjct: 242 SGETLTYGL-EGGDLQGELIDAH------TLRVEG--LDLPLPLPGYHNASNFLAALAVF 292

Query: 304 SIL---TADVDTA---IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            I+             ++        EGR KRY  +       ++DE+YNA   SM AA+
Sbjct: 293 KIIQGQGLSPTELYTPLQTGLSVQLPEGRAKRYELS---NDIVILDETYNAGLESMIAAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L +       R IAVLG M E+GE S  FH  + ++    N+  +++      A+  A
Sbjct: 350 KLLMETPGQ---RFIAVLGTMKELGERSLEFHQKVGKMAQELNLDALFILADAEEAIAMA 406

Query: 418 -LPRSIHVHYSETMD------GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              + + V     M+       +   +   +  GD ++ K+S+S   YR++  + +   +
Sbjct: 407 TGAKGLSVVEIGKMEVENIHNQIAEQLIEFIQPGDRILFKASHSVELYRVVEKVRKTLES 466


>gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
 gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
          Length = 455

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 203/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLN--LPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRGNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRHRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL + G   +  +D    + +
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGEDGLALIPCEDEHAAMFQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S     +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TTSQGHQQR---TFGVDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +D   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLILDDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452


>gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
 gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
          Length = 449

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 222/466 (47%), Gaps = 25/466 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   +   L   +   + G     ++ G++ DSR +   + F A KG   DGHD++  A
Sbjct: 1   MNTRISSDQLAFLLDAQTRGSA--AYIQGLNFDSRHVQSGDLFVAFKGDKADGHDYVEAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V   +        I    V+D L AL + A + R  S AT + ITGS GKT
Sbjct: 59  RARGAVAALVERWVPVE-----ITQIRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K  +   LS+   T A  G+YNN IGVPLTL  +  +  F + E+G    G+I +L  
Sbjct: 114 TVKSTVAHILSAQGATSATQGNYNNEIGVPLTLLELGPEDQFAVVEMGARFKGDIAYLCA 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P++ ++T + PAH+  F  I+ IA  K EIF+G++ T    +  D  +    + ++ 
Sbjct: 174 LVEPNVRILTAVLPAHMETFGSIDVIAQTKGEIFDGMKPTDVAVMPGDSPYLSAWQTRAA 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 I +FG S+  D Q+     +      + ++      EVV   +G H A N+  +
Sbjct: 234 G----KIVTFGYSEANDIQILDVSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAAS 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G        +DT +  ++     +GR  R   +      TL+D+SYNA+P +M+ A++ 
Sbjct: 290 VGACLACGMSLDTIVAQVASVQAVQGRLARIILS---DKTTLVDDSYNASPEAMRQALAA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +      G R+A+LG M E+G  S  +H  + E     +++ +WLSG     L D+  
Sbjct: 347 LER----SPGARLAILGPMAELGVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDS-- 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               + Y      +   ++S +   D ++VK+S S    R+ + L 
Sbjct: 401 ---RLRYFADTQAIIDELRS-VPVFDWILVKASRSARLDRVASHLQ 442


>gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 489

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 177/480 (36%), Positives = 245/480 (51%), Gaps = 34/480 (7%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LWT  ++  A  G +        V+G+ IDSR +   + FFA+KG + DGH ++  A  
Sbjct: 21  ALWTSEEIAAATGGRASAPF---AVSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFG 77

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   VV             P   V +   AL  L  AAR R  A II +TGS GKT  
Sbjct: 78  RGAAGAVVEHACFG-------PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGV 130

Query: 123 KEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE L  AL  +S  + +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GE+  LT 
Sbjct: 131 KEALYAALDRASRGRAHRSVKSYNNHVGVPLSLARMPARTSFGVFEMGMNHAGELAALTR 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++TTIAPAH+ +F+G E IA AKAEIFEGLE  G   +  D+  FE L+AK+ 
Sbjct: 191 LVRPHVAIVTTIAPAHIGHFAGEEAIADAKAEIFEGLEPGGVAIIPADNRHFEHLRAKA- 249

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L  + + SFG +K+A  +L          + +   L G+ +       G H   N L  
Sbjct: 250 TLHAERVISFGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAV 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANPASMKA 355
           +  V  +  D+  A  AL+      GRG R+    + G       LIDESYNANPASM  
Sbjct: 310 MAAVEAIGGDLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAV 369

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +  L Q       RR+A+LG M E+G     +H +LA  ++   +  + L G  + AL 
Sbjct: 370 TLRQLGQTPA---ARRVAILGAMRELGADEARYHAELAGPVAEGKVDRLILVGGEMTALA 426

Query: 416 DALPRSIHVHYSETMDGLFLFIQ-----------SSLVDGDVVVVKSSNSCGFYRLINLL 464
           DAL +S     +  +D     +Q             +  GD ++VK SNS G   L+  L
Sbjct: 427 DALGKSGSAALAGAID--VAHVQTAAEAAECLAADGVRGGDAILVKGSNSVGLGALVRSL 484


>gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 426

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 205/453 (45%), Gaps = 34/453 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q +Q      + +  +  + +DSR +     FFAI+    +G+ ++  A++KGA +V+
Sbjct: 4   LCQILQ-KRFSHLKELSIQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEKGASIVI 58

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +             V  V D +  + +LA   R   K  +IAITGS GKTTTK+++   
Sbjct: 59  ADHYFEPHER-----VISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAI 113

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS    T   +G+YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +I
Sbjct: 114 LSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIARPDYGII 173

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I  +HL      E +  AK E+   L   G    + DD F + +              
Sbjct: 174 TNIGDSHLEFLKTRENVFKAKTELLPYLP-QGHFITSGDDIFLKKVSG----------VH 222

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G  +  D+++  +++    +  +V+  GK  E+     G H   N  M + +  ++   
Sbjct: 223 VGYEEGNDYRIVSYRKKERMTSFQVR--GKDYEICL--EGKHNVMNAAMGIALAEMIGMK 278

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS       R +R+           I+++YNA+P SM AA+  L ++      
Sbjct: 279 PEEIQRNLSQIELSPMRFERFEYR----GTEYINDAYNASPISMFAALDSLEEMKAE--- 331

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R+ AVLGDM E+GE    FH ++ +     ++  V L G  +      LP    +++ E+
Sbjct: 332 RKFAVLGDMLELGEREIEFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEGLYHFES 391

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            + +  +++        V++K+S       +I 
Sbjct: 392 KEAIREYLRK--FSEKTVLIKASRGMKLEDIIE 422


>gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK330]
          Length = 456

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 205/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL +  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGT------YILVDDVLTSFLRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   +AD  L + ++  +    E     + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDADIFLTRLEERKDSLSFECNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S          R           ++ + YNANP +M+  +   S I  
Sbjct: 288 EGISEAAIAQAFSELELTR---NRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPT 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NLGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVLYFIKNDEKDQFEQLTKAVREKLTPTDQILLKGSNSMNLAKLVEDLED 454


>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 483

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 144/489 (29%), Positives = 220/489 (44%), Gaps = 36/489 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  IG    +        DSR   P   F AI+G H DGHDF+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDADSESRSTNTVSDSRQAGPGSVFVAIRGEHVDGHDFVAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAIT 114
              +GA + +V+      + S  +P   V D + AL +LA         L     II +T
Sbjct: 60  TAGQGATVAIVD----HEVESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GE
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGY 290
           +      L    +  FG   + + ++R     +++S    +  V   G    V     G 
Sbjct: 236 MA----GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGR 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNAN 349
           H   N L    +        +T  + L+  H              +G  FTLID+S+NAN
Sbjct: 292 HNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNAN 351

Query: 350 PASMKAAISVLSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P SMKA ++ L   + +      R+A+LG M E+G    + H  +    +   I  +   
Sbjct: 352 PDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAV 411

Query: 408 G----FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           G     H+ AL  AL              VH  +  + L + +  +     VV++K S++
Sbjct: 412 GSAQDQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLARN-HPDAVVLLKGSHA 470

Query: 455 CGFYRLINL 463
            G   L   
Sbjct: 471 SGLSALAER 479


>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 452

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 130/460 (28%), Positives = 210/460 (45%), Gaps = 19/460 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T   +  A+   SI       V  + IDSR++   + FF I G   DGH+F   A
Sbjct: 1   MN--MTLTQIASAM-ASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  VV +  +      L +PV  V D   AL +LA A R +++A +I ++GS GKT
Sbjct: 58  VENGACAVVASAPL-----DLDVPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   LS+  +T     + NN IG+PL++  M  D DF + ELG+S  G++  L +
Sbjct: 113 TVKEMLAQVLSAAGRTAKNFRNLNNQIGLPLSILEMDGDEDFWVLELGISRPGDMDELGY 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++ P  A++  I   HL     +  +A  KA + + + K G   +N D   +  L  +S 
Sbjct: 173 ILAPDAALLVNIGACHLEGLGSLAGVAEQKAVLLDHVRKGGFACVNAD---YPELMQEST 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K +   G    AD+   + +  +       ++  + +       G H+A+N+   +
Sbjct: 230 KRSPKLVTFSGTGARADYSCLRQENVAGAISYTFRVGHEELRCTVSA-GIHVAENLAAVV 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L     T   ALS + P   R  + R     G +  ID++YNANP SM  +I   
Sbjct: 289 AMAMELGMTFATIESALSAYSPVAQRFVQTRV----GTWLFIDDTYNANPVSMARSIGEA 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++      R + VLGDM E+G  S   H +L  +++    SH +  G +   +KD L  
Sbjct: 345 KRLGE--GKRLVLVLGDMLELGRDSVRAHRELGGLIADTGASHCFFQGRYAEDVKDGLGD 402

Query: 421 SIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              +       + +   + +   D  V++ K S  C   +
Sbjct: 403 YNGIFMKVSGAEEVLQALNAVRRDQGVMLFKGSRGCKMEQ 442


>gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 12P80B1]
          Length = 494

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 204/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKGRLMRLS 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV+  G H+     A+  +     +      L   +   L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVFTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLCQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI  L
Sbjct: 475 KGSRGMAMESLIADL 489


>gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
 gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
          Length = 468

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 470

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 214/477 (44%), Gaps = 26/477 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P  +   L   +    +    +   +  ++IDSR       F  ++G   DGH ++  A 
Sbjct: 7   PALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAF 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IA 112
           Q+GA   +V   + +  GS  +         +  V D L AL  L        +  I I 
Sbjct: 67  QRGASAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIRIG 126

Query: 113 ITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           +TGS GKT+TKEML   LS    + +A  G+ N+ IGVPL++  +  + +  I E+G+ H
Sbjct: 127 VTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDH 186

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GE+  L  +V+P++AV+T I  AHL  F   E IA  KA+IF   +     F+  D+ F
Sbjct: 187 VGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEF 246

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F +L          T   +G +      +  ++    +    V L  K + +   G G H
Sbjct: 247 FHVLVEGWRG----TFLPYGPA-----TVEGFEGWESRGLEGVILLWKGLRIPLQGYGEH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M +N L  + +   L        + L  + P  GRG+        G    + + YNANP 
Sbjct: 298 MVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELKEI----GGVWFLVDCYNANPE 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+A++  +  +      RRI VLG M E+G+ + S H  L + L+ Y    V L G  +
Sbjct: 354 SMRASLEGVRGLKGV--RRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEM 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            A    L     V +  T++     + S + +GD+V++K S + G  R+I      +
Sbjct: 412 EAAFAVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQDFEGRY 468


>gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 951

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 192/441 (43%), Gaps = 21/441 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S D+R I   E F A+ G ++D H+++  A  +G         +  ++    +P  
Sbjct: 512 IKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARG----ACAAVVAHAVPDAKLPQL 567

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143
            + D   AL ++  A R +    ++A+TGS GKTTTKEM++  L+         A  G+ 
Sbjct: 568 VLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAMLAEWQGEAGRLATAGNL 627

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +    +FELGM+H GEI  L  +  P +A++T     H      +
Sbjct: 628 NNDIGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPTVALVTNAQREHQEFMHSV 687

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A         L + G      D+ +  +  A +     + +  FG     D    + 
Sbjct: 688 EAVAHENGAAIAALPEDGVAVYPGDEPYSAIWDALAEP---RRVLRFGLQPGLDVYAEQI 744

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   V       ++     G H  +N L  +       A ++ A++ALS F P 
Sbjct: 745 LADVHATRCRVVTPMGVADLTLPVPGLHNLRNALAAIASAIAAGAPLEGAVRALSGFSPV 804

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R +         LID++YNANP S++ A+ VL++++    G+R+ VLGDM E+G+
Sbjct: 805 AG---RMQHKHMSDGTLLIDDTYNANPDSVRVAVDVLARMA----GKRVLVLGDMGEVGD 857

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H+++        +      G    A   A     H     ++D +   ++     
Sbjct: 858 NGPAMHVEVGNYAREQGLDAFITLGEASRAAAAAFGVGAHA--CASVDEVVAALRGLRAS 915

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              V++K S      R++   
Sbjct: 916 --CVLIKGSRFMRMERVVTAF 934



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 174/488 (35%), Gaps = 51/488 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+ T  + +  +               + +DSR I P + F A  G   DG  +I  A+
Sbjct: 9   NPVATVAETVAWLHSRV------SLTAHLKLDSRDIEPGDVFVACPGLSSDGRLYIEKAL 62

Query: 62  QKGAGLVV-----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             GA  V+      +     +  +  +PV G+  +LG L       R  ++  ++A+TG+
Sbjct: 63  ALGASAVLFEAPANDAVAAVADQAPMLPVTGLRALLGELADTW-YGRPSAELAVVAVTGT 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------------ARMPVDVD 161
            GKT++ + +  ALS   K    IG+    +    TL                    D  
Sbjct: 122 NGKTSSVQWIAHALSRNDKPCGTIGTLGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAG 181

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                +  S +G  +     VR  +A  T +   HL     +E   +AKA +F       
Sbjct: 182 AKAVAMEASSIGIEQGRMDGVRVALAAFTNLTRDHLDYHGTMERYEAAKARLF-RWPGLT 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGK 279
              +N DD     L A   A G+   YS        A  + R  +  ++     +     
Sbjct: 241 AAVINADDEAGRRLIAGLPA-GMAMGYSLSADPEIPAGMRARDLQATAQGQIFTLVSPHG 299

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--- 336
             ++V   +G H   N+L+  G++  L        + L+   P +GR +      +    
Sbjct: 300 EAQIVTRLLGAHNVSNLLLVAGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQA 359

Query: 337 --GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G   L+   Y   P ++  A+S L  ++    GR I + G     GE       ++  
Sbjct: 360 ATGRGALVVVDYAHTPDALARALSALRAVATARSGRLICLFGC---GGERDPGKRPEMGR 416

Query: 395 VLSLYNISHVWLSGFHVL-----ALKDALPRSIHVHYSETMD-GLFLFIQSSL---VDGD 445
           + +     HV +S  +       A+ + +   I       +       I  ++      D
Sbjct: 417 IAADL-ADHVVVSSDNPRTESPEAIVEQILAGIPDSVRPDVQVDRARAIMQTIWAAAPDD 475

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 476 VVLLAGKG 483


>gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
 gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
          Length = 475

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 192/467 (41%), Gaps = 18/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N ++T  +    I G ++          +S DSRS  P + F A+KG  +D HDF+    
Sbjct: 6   NAMFTLREAAALIPGATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +    V+V           ++P   V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVSAVLVAR----VPDGWTVPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTT 121

Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++     +  A  G++NN +G+PLTL R+       + ELGM+H GE   L
Sbjct: 122 VKEMIASIFAAAVGAAERLATAGNFNNDVGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+      H    + +E +A   A +   L+  G      +D++  + +  
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALKPEGVAVFPANDAYASIWRVA 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +       I  F  +              +   + ++    +++V    +G H A N L 
Sbjct: 242 ATG---NRIIDFALNTAERATEAAVTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +  R AL       +ID++YNANP SM+AAI
Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+         R+ V+GDM E+G+    FH ++        +  ++  G        A
Sbjct: 359 DVLAS----HASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGVDALYAMGDASRDACIA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q +        +VK S      R+++ 
Sbjct: 415 Y--GASAHHVADVGTLVAQLQQAGFGAAATFLVKGSRFMQMERVVDA 459


>gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 474

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 165/465 (35%), Positives = 231/465 (49%), Gaps = 12/465 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G   G V     NG++ +SR I P + F A+KG   DGHDF   A  
Sbjct: 7   PLWTAQEIAVATGGRIEGGVFDA--NGLTYNSREIEPGDLFLALKGAR-DGHDFAASAFA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
            GA   +V   +         P   V D L AL  L  AAR R       A+TGSVGKT+
Sbjct: 64  AGAAGALVERPVDGG------PCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKTS 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             + +   L      +A I SYNNHIGVPLTLARM   V+  +FE+GM+  GEI  L  +
Sbjct: 118 VTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMHPSVERAVFEIGMNAPGEIGPLARM 177

Query: 182 VRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           V+PH A +TT+ P H+     G   +A+ KA IF+GL   G   +N D+ + ELL   + 
Sbjct: 178 VQPHAACVTTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGLAVINGDNPWVELLHQAAL 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + + +FG     D +L  +    E + +  ++ G++        G+H   N L  +
Sbjct: 238 RAGAR-VATFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAVI 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L   V+TA++AL+ F P +GRG+     L +G FTLIDESYNANP SMKA    L
Sbjct: 297 LMLDALDVPVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGFLSL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   GRR+ VL DM E+G+ S++ H  LA  +    I  V  +G  +  L DA+  
Sbjct: 357 GAKPVERRGRRVVVLTDMLELGDQSEALHAGLATAIEAAAIDVVHAAGPQMRHLYDAISP 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                ++ T   L           D+V+VK SN      +   LL
Sbjct: 417 ERRGVWAGTAAALADQAADLAGPDDIVMVKGSNGSKASLVAAALL 461


>gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 481

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 213/468 (45%), Gaps = 19/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +T   +   + G   GI PQ  ++ G+  DSR ++P + F A +G   +G +F   A+  
Sbjct: 4   FTAQQIADIVGGELYGIDPQTTLSAGVETDSREVSPGDIFVARRGETTNGIEFAPSAIAA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121
             G  +V  + V ++G  ++P   V D   AL KLA A+    R   T+IAITGS GKT+
Sbjct: 64  --GAAIVIAEAVPTVGDDTLPSCVVTDATVALGKLASASVEALRETMTVIAITGSSGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            K+++++ L+   +T     SYNN +GVPLT  R   +  F + E+G   +G + +LT L
Sbjct: 122 VKDLVSVLLAGEGETVYPPNSYNNEVGVPLTALRAGEETRFLVLEMGARSIGNLAYLTSL 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RP IAV   +  AH   F  I+  A AKAE+ E L++ G   LN DD     ++     
Sbjct: 182 IRPDIAVELNVGAAHSGVFGSIDNTARAKAELVESLQEPGWAVLNADDPRVRDMQNVLAQ 241

Query: 242 LGIKTIYSFGKSKNAD--FQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNML 297
                 +S G+    D           +   S   + L G+   +V    +G H   N L
Sbjct: 242 GVNTMWFSEGEPTRPDTTVWASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHVSNAL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  +      + +  L+          R     +    T+I+++YNANP SM+AA+
Sbjct: 302 AAATVAHLCGVTARSIVTTLATAGAASRW--RMELVDSPNGVTVINDAYNANPDSMRAAL 359

Query: 358 SVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             L+++      +   R +AVLG+M E+G+ S   H  +  ++   NIS     G     
Sbjct: 360 ITLAEMGRGDDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTIAVGEGARP 419

Query: 414 LKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  A            + E +      +QS L  GD+V+ KSS   G 
Sbjct: 420 IYQAANLEGSWGNEAAWVENISEARDLLQSELQPGDIVLFKSSRDAGL 467


>gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans
           C54]
          Length = 954

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/443 (26%), Positives = 197/443 (44%), Gaps = 21/443 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+S D+R I   E F A+ G ++D H+++  A ++G         +  ++   S+P 
Sbjct: 514 LVKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERG----ACAAVVAHAVPESSLPQ 569

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGS 142
             + D   AL ++  A R R K  ++A+TGS GKTTTKEM++  L+  +      A  G+
Sbjct: 570 LVLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGN 629

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN IGVPLT+ R+  +    +FELGM+H GEI  L  +  P +A++T     H      
Sbjct: 630 LNNDIGVPLTVLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVALVTNAQREHQEFMHT 689

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E +A         L   G      D+ +  +          +    FG     D    +
Sbjct: 690 VEAVALENGAAIAALPADGVAVYPGDEPYAAIW---DRLAAPRRALRFGLQPGLDVYAEQ 746

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + +   V     S ++     G H  +N L  +       A +D A++AL+ F P
Sbjct: 747 ILADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAGFSP 806

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR +  + +       LID++YNANP S++AAI VL++I+    G R+ VLGDM E+G
Sbjct: 807 VAGRMQYKKLS---DGTLLIDDTYNANPDSVRAAIDVLARIA----GTRVLVLGDMGEVG 859

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +   + H ++        +  +   G    A   A     H     ++D +   ++    
Sbjct: 860 DNGPAMHEEVGNYARELGLDALITLGDASRAAAAAFGTGAHA--CASVDEVVAALRGLRA 917

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
               V++K S      R++   +
Sbjct: 918 S--CVLIKGSRFMRMERVVTAFI 938



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/464 (20%), Positives = 167/464 (35%), Gaps = 48/464 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-------GSL 81
            + +DSR I P + F A  G   DG  +I  A+  GA  V+      A+I        + 
Sbjct: 30  HLKLDSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTP 89

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV G+  +LG L       R  S   ++A+TG+ GKT++ + +  AL    K    IG
Sbjct: 90  MLPVTGLRALLGELGDTW-YGRPSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIG 148

Query: 142 SYNNHIGVPLT---------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +    +    T               L     D       +  S +G  +     VR  +
Sbjct: 149 TLGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVAL 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   HL     +E   +AKA +F          +N DD     L A   A     
Sbjct: 209 AAYTNLTRDHLDYHGTMERYEAAKASLF-RWPGLSAAVVNADDEAGRRLIASLPADLSVM 267

Query: 247 IYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            YS        A  + R  +  ++     +       ++V   +G H   N+L+  G++ 
Sbjct: 268 GYSLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLY 327

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFFTLIDESYNANPASMKAAISV 359
            L        + L+   P +GR +           + G   L+   Y+  P S+  A+  
Sbjct: 328 KLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVDYSHTPDSLARALMA 387

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L  ++    GR + V G     G+       ++  + +     HV +S  +  +      
Sbjct: 388 LRPVAQARAGRLVCVFGC---GGDRDAGKRPEMGRIAAEL-ADHVVVSSDNPRSESPDAI 443

Query: 414 ---LKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +P S+ V    +    +   I +S    DVV++  K 
Sbjct: 444 VAQILAGIPASVAVEVQVDRARAIMQAIWAS-APEDVVLLAGKG 486


>gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
 gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
          Length = 454

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 203/465 (43%), Gaps = 28/465 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + Q   G   G      VN ++ D+R I P   F A++G  +D HDF+  A   
Sbjct: 2   MW-LSQIAQWTGGALHGD--DLKVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNG 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V  +           V  V D    L +LA     +     +A+TG+ GKTT K
Sbjct: 59  GAIAALVEHEQDCFDN-----VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L     T A  G++NN +GVPLTL R+  +  + + ELG +  GEI + + L R
Sbjct: 114 EMAATMLGE--GTLATNGNFNNDVGVPLTLLRLRAEHRYAVIELGANAPGEIAWTSSLTR 171

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T +  AHL  F  ++ IA AKAEIF G  + G   +N DDSF +    K+ A G
Sbjct: 172 PQVVLVTNVTGAHLEGFGSMQGIADAKAEIFTGCTQGGQAIVNNDDSFADFFAEKARAAG 231

Query: 244 IKTIYSFGKSK----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + T+      +     AD          + +   +Q  G ++  +    G H   N LM 
Sbjct: 232 L-TVVRVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAV--LVPLPGAHQVSNALMA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              V  L A +   +  L+   P  GR        + G  T++D++YNANP S++AAI  
Sbjct: 289 CAAVRALGASLPQVLPRLAALKPVPGRMH----IQSAGTGTVVDDTYNANPGSVRAAIDW 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+            VLG+M E+G  + S    L E      I+ + +      A   A  
Sbjct: 345 LAAQPAPQM----LVLGEMGELGPQADSLVEALGEYAQQAGIAGLVV---MTGAAAAARG 397

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                + ++       +    L  G  V+VK S S G   ++ LL
Sbjct: 398 YGEAANIAKDYQQAANWSAPVLEQGGTVLVKGSRSAGMEAVVRLL 442


>gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
 gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
          Length = 439

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 212/464 (45%), Gaps = 27/464 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   + Q +    +       +   + DSRSI  +  +  I+G   DGH FI  AV +
Sbjct: 1   MVTIAQIAQWLG---LEETDTRALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQ 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +    +   +  + I V  V+D L AL  +A     +    +IAITGS GKT+TK
Sbjct: 58  GAIATLWKKGI--PLPEMDITVLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L    +T+   G++N+ IG+PLT+  MP++ +  + E+GM+  G+I  L++L  
Sbjct: 116 DMIESVLKQSFRTHKTAGNFNSDIGMPLTILMMPIETEVAVLEMGMNGFGDIELLSNLAE 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T I  +H     G   IA AK EI  GL+  G +F++ D+     + A+     
Sbjct: 176 PDIALVTNIGESHAEQVGGRTGIAQAKLEIRSGLKPNGHLFVDGDEPLLGEVPAE----- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G      + + + +     +  +    G +       +G H  +N    +   
Sbjct: 231 -----RIGYHATNTYVIEQAEATFIGTTFKF--DGTTFS--IPVLGKHQVRNAAYAIATA 281

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D     L+       R +R       G   +I+++YNA+P SM AAI  ++ +
Sbjct: 282 KALGLTDDVIQAGLNDVQLTPMRMERL----MYGQTAIINDAYNASPTSMNAAIETIATL 337

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                  ++ VLGDM E+G+  +  H  + + ++L  +SH  L G     + D +   ++
Sbjct: 338 DGFTN--KVVVLGDMYELGQQERLLHASVGKKIAL-PVSHAILVGGKGRYIADGIADPTV 394

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V +++T++     +Q  L    V+++K+S      ++   L E
Sbjct: 395 QVQFADTVEEAARLLQPLLGQQTVILLKASRGLALEQIFTFLNE 438


>gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK355]
          Length = 454

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 207/468 (44%), Gaps = 30/468 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEGA------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A        
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCK----- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG   + D  L + ++  +          + ++      G + A N ++       
Sbjct: 233 -LVRFG--PDTDIFLTRLEERKDSLSFGCNFLEQRID--LPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSETAIAQAFSELELTRNRTEWKKAA---NGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NSGGRKLAVLADMKELGADSKSMHGSMITSLNPEILTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            VHY       +  + L   ++ SL   D +++K SNS    +L+  L
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVRESLTSADQILLKGSNSMNLAKLVEDL 452


>gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase precursor
           [Rhodobacter sphaeroides KD131]
          Length = 477

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 180/475 (37%), Positives = 252/475 (53%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A  G +          G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDEAAAATGGCATRAFAA---TGVSIDTRSLGPGDLFVALTDQR-DGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSRCPEGLPED--APLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+  + +FG+S +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGVPAV-TFGQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium longum subsp. longum F8]
          Length = 480

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 216/485 (44%), Gaps = 35/485 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+     +
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAITGSVG 118
           GA + +V+      + S  +P   V D + AL +LA         L     II +TGSVG
Sbjct: 61  GATVAIVD----HEVKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI  L
Sbjct: 117 KTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     +   
Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMAGL 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGYHMAQ 294
           ++      +  FG   + + ++R     +++S    +  V   G    V     G H   
Sbjct: 237 ANG----DVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASM 353
           N L    +        +T  + L+  H              +G  FTLID+S+NANP SM
Sbjct: 293 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 352

Query: 354 KAAISVLSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           KA ++ L   + +      R+A+LG M E+G    + H  +        I  +   G   
Sbjct: 353 KAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQ 412

Query: 409 -FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             H+ AL  AL              VH  +  + L + +  +     VV++K S++ G  
Sbjct: 413 DQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARN-HPDAVVLLKGSHASGLS 471

Query: 459 RLINL 463
            L   
Sbjct: 472 ALAER 476


>gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 46P47B1]
          Length = 494

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 205/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QAIQG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQAIQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPIMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLS 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV   G H+     A+     +  +      L   ++  L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVLTLGNHMAHTATAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI  L
Sbjct: 475 KGSRDMAMESLIADL 489


>gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
 gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis CU385]
 gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
          Length = 439

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 200/453 (44%), Gaps = 25/453 (5%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++    
Sbjct: 4   ESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                VDD L AL  LA A R      +  ITGS GKTT KEML   L          A 
Sbjct: 63  ---LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +   +FG     D 
Sbjct: 180 GFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTR---TFGIDSG-DV 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                         ++    +   VV    G H   N      +       ++   + L 
Sbjct: 236 HAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLK 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMKAAI VL+++       RI V+GDM
Sbjct: 296 GFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAP----RIFVMGDM 348

Query: 379 CEMGE----LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
            E+GE     + + H ++        I   +  G + +   +         +    D L 
Sbjct: 349 GELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLI 406

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             ++  L +   V+VK S       ++  L ++
Sbjct: 407 QVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 439


>gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
 gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
          Length = 478

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 177/475 (37%), Positives = 248/475 (52%), Gaps = 18/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  D   A  G S  +      +G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MAPLWTSTDAATATGGRSTTV---WQAHGVSIDTRTLQPGDLFVALKDVR-DGHDFVAAA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+        +   P+  V DVL  L  L  A R R++A +I +TGSVGKT
Sbjct: 57  LAKGAAAALVSRIPEGVAAN--APLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLAR+P   DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRCMLLGQGSVHAAEASYNNHWGVPLTLARLPATADFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + R H+A+ITTIA AHL+ F G+E IA  KA I +GLE  G   L  D +   +L   + 
Sbjct: 175 MARLHVALITTIATAHLAAFDGLEGIAREKATIIQGLEPGGIAVLPTDLAVSPVLLRAAS 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+      +FG +K+ADFQ+      ++ + ++    G    +     G H A N +  L
Sbjct: 235 AV---RSLTFGTAKSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGCL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357
            +   L+ D   A   L  + P  GRG R R  L+      F LID++YNANPAS+ AA+
Sbjct: 292 AVAEALSLDPTIATHDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAAL 351

Query: 358 SVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+   P         GRRIA+LGDM E+GE   + H+ +A    L  IS +   G  +
Sbjct: 352 EVLAASQPTDGVGRIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHCVGPLM 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             L DALP+     +  T   L     + +  GD+V+VK S       +++ L +
Sbjct: 412 RGLHDALPKRQRGEWVATAPELLARAATLVDAGDIVLVKGSKGIKVSLMVDGLRK 466


>gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
 gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
          Length = 449

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 191/463 (41%), Gaps = 21/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + + G  +    +   +G+S D+R+I P   FFA++G  +D HDFI  AV  G
Sbjct: 1   MNLGELAKHVPGAKLSGDAETSFDGVSTDTRAIRPGSLFFALRGDRFDAHDFIADAVGGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +VV   +        +P   V D   AL   A A R +    +IA+ GS GKTT  +
Sbjct: 61  AAALVVERRI-----DTPLPQIIVPDGRRALGAAAAAWRAQFDVPLIAVAGSNGKTTVTQ 115

Query: 125 MLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   L++     +  A  G+ NN +G+PL L  +       + ELGM+H GEI +L +L
Sbjct: 116 MIAAILAAAFGEERRLATRGNLNNDVGLPLMLFELKAGHRIAVLELGMNHPGEIAYLANL 175

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A++T     H    + +E  A     +   L   GT     DD    + +  +  
Sbjct: 176 ARPTVALVTNAQREHQEFMASVEATAHENGSVIAALPTDGTAVFPADDPCAGIWRKLA-- 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + +  F +   A      ++  +  + + +       +      G H   N L    
Sbjct: 234 -GTRRVIDFARRGTATVSGT-FRTSAGFAEVSITTPAGCWQANLPLAGEHNVHNALAATA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                    +   + L  F P  GRG + R         LID++YNANP S++AAI VL+
Sbjct: 292 AALAAGVPPEAIRRGLESFRPVAGRGVQLRTRT---GARLIDDTYNANPDSVRAAIDVLA 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                    RI  LGDM E+G     FH ++       +I  +   G             
Sbjct: 349 GFPQP----RILALGDMGEVGVHGPEFHREIGRYARERDIDTLLALGELSSETVRTF--G 402

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H+  TMD L   + S+      ++VK S      R +  L
Sbjct: 403 TSGHHFGTMDELIAALASADRPEATLLVKGSRFMQMERAVKAL 445


>gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 447

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/444 (30%), Positives = 212/444 (47%), Gaps = 34/444 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GIS D+R I P   FFA+KG +++G+ F   A++ GA   V++ +              
Sbjct: 32  DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKDKT----IL 87

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+DVL  L  LA A R      ++A+TGS GKTTTKE++   LS   KT A  G+ NNHI
Sbjct: 88  VEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGNLNNHI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  + + GI E+G +H+GEI  LT +  P    IT    AHL  F  ++ + 
Sbjct: 148 GVPLTLLSMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYITNFGKAHLEGFGSVQGVI 207

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+++ L    GT+FLN DD        ++  LG    + F   +  D         
Sbjct: 208 KGKSELYDYLIAHKGTLFLNLDDPI------QAEKLGSTHTFCFSAHQETDL---NIVYH 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + Q +   Q     + V  + +G +   N+     I +      +   +AL  + PK  R
Sbjct: 259 TAQPFANFQFD--EITVNSNLMGQYNTINLAAAAAIGTFFKISAEDIKEALEAYVPKNNR 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     +N G  T+I ++YNANP SM+AA+   + +    +G +IA LGDM E+GE S 
Sbjct: 317 SQ----IINNGDQTIILDAYNANPTSMEAALRNFAGL--ERQGPKIAFLGDMFELGETSA 370

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-----IQSSL 441
             H  +A + +  +I H+ L G H          +        ++ L        +Q +L
Sbjct: 371 YEHQFIANLAAQLDIDHLILLGSHFE------KTNTTAFKFTDVNQLKEQNLPVSLQKAL 424

Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465
            D   +++K S       L++L+ 
Sbjct: 425 AD-ATILIKGSRGMKLETLLDLVQ 447


>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
 gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
          Length = 425

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 198/437 (45%), Gaps = 29/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I     FFA+KG +++G+ +   A++KGA   VV+        +++     VD
Sbjct: 16  VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEY----AINNKFILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +L    R + KA +I +TGS GKTTTKE++   +    KT A +G+ NNHIGV
Sbjct: 72  DVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +HL EI FL+ L  P    IT    AHL  F   E +   
Sbjct: 132 PLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAEPDYGYITNFGKAHLEGFGSTEGVIQG 191

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++ L      +FLN DD        +S          F  + +  F++        
Sbjct: 192 KSELYKYLTTNQKHVFLNADDPI-----QESKLGTYVKKIGFSSNNSNYFKIELLSADPF 246

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                V ++ K + +    +G +   N    + +       +    +A+  + P   R +
Sbjct: 247 -----VTIKVKDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLIKEAIEGYTPANNRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                  Q  + +I ++YNANP SM AA+   + I       +I  LGDM E+G  +++ 
Sbjct: 302 ILE----QNGYKIILDAYNANPTSMAAALDNFNGIKAAH---KIVFLGDMFELGTTAETE 354

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVV 447
           H  +A+     N +  +L G +    K             T   L  +++   L     +
Sbjct: 355 HQHIADKACKMNFTTTFLVGENFAKAK------TEATQLATFKDLEEYLKKHPLQPNSSL 408

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      R++++L
Sbjct: 409 LIKGSRGMALERILDIL 425


>gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
 gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
          Length = 470

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 214/477 (44%), Gaps = 26/477 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P  +   L   +    +    +   +  ++IDSR       F  ++G   DGH ++  A 
Sbjct: 7   PALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAF 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IA 112
           Q+GA   +V   + +  GS  +         +  V D L AL  L        +  I I 
Sbjct: 67  QRGASAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIG 126

Query: 113 ITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           +TGS GKT+TKEML   LS    + +A  G+ N+ IGVPL++  +  + +  I E+G+ H
Sbjct: 127 VTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDH 186

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GE+  L  +V+P++AV+T I  AHL  F   E IA  KA+IF   +     F+  D+ F
Sbjct: 187 VGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEF 246

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F +L          T   +G +      +  ++    +    V L  K + +   G G H
Sbjct: 247 FHVLVEGWRG----TFLPYGPA-----TVEGFEGWESRGLEGVILSWKGLRIPLQGYGEH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M +N L  + +   L        + L  + P  GRG+        G    + + YNANP 
Sbjct: 298 MVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELKEI----GGVWFLVDCYNANPE 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+A++  +  +      RRI VLG M E+G+ + S H  L + L+ Y    V L G  +
Sbjct: 354 SMRASLEGVRGLKGI--RRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEM 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            A    L     V +  T++     + S + +GD+V++K S + G  R+I      +
Sbjct: 412 EAAFAVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQDFEGRY 468


>gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
          Length = 464

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 194/464 (41%), Gaps = 22/464 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +S D+R++ P   + A++G  +DGHDF   A  +GA  ++
Sbjct: 9   IAHWAGGEIHGD--DVAIDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARGASALL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       +  + +P   V D   AL K+A   +      + AITGS GKT+ K +L   
Sbjct: 67  VER-----LLPIELPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVKSLLLSI 121

Query: 130 LSSIKK-----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L  + +      YA  G+ NN IG+PL +   P D D+ ++E+G    G+I +LT + RP
Sbjct: 122 LQQVARHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  IAPAHL     +  +A  K  I+  L   G   +N DD++    +        
Sbjct: 182 RYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQHFVGTPA 241

Query: 245 K-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +  +G    AD   R  +  ++ S   +        VV    G H   N L    + 
Sbjct: 242 RCRVLRYGLEHTADVTARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAAASLA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                ++      L+   P  GR   ++         L+D+SYNANP S+ AAI  L+  
Sbjct: 302 LAAGIELALVAAGLADAQPVPGRQIAHQL---HNGAVLVDDSYNANPGSLAAAIDALAAA 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G      VLGDM E+G  +++ H           +  ++  G    A   A      
Sbjct: 359 PEEG----WLVLGDMRELGPDAEALHAQAGLRARAAGLKRLYALGPLSAAAATAFGEGGR 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +  T D L   ++  L  G   +VK S       ++  LL +
Sbjct: 415 --HFATHDALSQALKDELHAGVRCLVKGSRGSAMDTIVKALLAQ 456


>gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 456

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 210/467 (44%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V       +   ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALV----EHEVEGAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G + I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              G + I +F  +  A         +         +     S +V  + +G H   N L
Sbjct: 235 ---GHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLGSAQVQLNLLGTHNVTNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L   ++  +  L+   P +G   R    +      +ID++YNANP S+ AA+
Sbjct: 292 AAAAAAGALGVSLEGIVAGLNNVQPVKG---RAVAQIASNGVRVIDDTYNANPGSINAAV 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 349 DILTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAAG-KVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Leadbetterella
           byssophila DSM 17132]
 gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leadbetterella
           byssophila DSM 17132]
          Length = 433

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 132/440 (30%), Positives = 205/440 (46%), Gaps = 23/440 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI+ D+R+I     FFA+KG  ++G+ F   A+Q GA   VV+   +     +      
Sbjct: 14  SGITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDDASLKGKERM----IY 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +DVL  L  LA   R +    +IA+TGS GKTT KE+LT  L    K +A  G+ NNHI
Sbjct: 70  CEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVLGQKYKVHATKGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  MP D    I E+G +H  EI  L  +  P    IT +  AHL  F G E I 
Sbjct: 130 GVPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIAEPTHGFITNLGKAHLEGFGGEEGIR 189

Query: 208 SAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+F+ L++  G +F+N +D     L  +     I  I  +G  ++A       K+ 
Sbjct: 190 KGKGELFDFLKQSGGIVFVNANDPKVRALAEE---RNILPIVYYGDDEDALL----IKEE 242

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S     E  + GK+        G +   NM     I        D A +A++ ++P   R
Sbjct: 243 SPVVVFESPVSGKTYTTFIG--GKYNFDNMQTAHAIGRYFDVSEDKACEAIAHYNPDNNR 300

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N      I ++YNANP+SM+A++     +       ++ VLGDM E+G+ S+
Sbjct: 301 SQHVMVGTNH----FIMDAYNANPSSMEASLKSFGALKTDSP--KVVVLGDMYELGDYSE 354

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + ++LS      V L G ++ A    LP++   +Y      +  ++     +   
Sbjct: 355 AEHAAIGKLLSELKFDDVVLFGENMKAALAFLPKA---YYFTDKFSMHNWLLDRKYENTY 411

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           ++VK S S G   ++     
Sbjct: 412 ILVKGSRSTGLESVLKAFQN 431


>gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 203/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLN--LPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL + G   +  +D    + +
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGEDGLALIPCEDEHAAVFQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S     +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TSSQGHQQQ---TFGVDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +D   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAGALALAAGLSLDDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452


>gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
 gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
          Length = 494

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 203/495 (41%), Gaps = 49/495 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKSK--------------------------NADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q  S+ V    IG H   N L        L   ++   K L    P +GR  R  
Sbjct: 303 NIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLS 362

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  
Sbjct: 363 M----DGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAADDEHTK 414

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG-DVVVV 449
           L   L+L  I HV   G H+     A+  +     +      L   +   L  G   V+ 
Sbjct: 415 LGHQLALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLCQLLSHGSATVLF 474

Query: 450 KSSNSCGFYRLINLL 464
           K S       LI  L
Sbjct: 475 KGSRGMAMESLIADL 489


>gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
 gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
          Length = 428

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/439 (30%), Positives = 211/439 (48%), Gaps = 27/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S D+R I     F A+KG ++D + F   A++KGA  VV++                
Sbjct: 15  SSVSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDNSKFYIDERT----LL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L AL +LA   R     TII +TGS GKTTTKE++   L     T A IG+ NNHI
Sbjct: 71  VEDSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R   D + GI E+G +H  EI FL  + +P    IT    AHL  F G+E + 
Sbjct: 131 GVPLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGYITNFGKAHLEGFGGVEGVI 190

Query: 208 SAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQ 265
             K+E++  ++    T+F+N DD    L K KS+ L   T YSF  ++  AD  + K   
Sbjct: 191 KGKSELYNYIKNNNKTVFINADDP---LQKEKSNNL---TTYSFSTNETEADVTISKVVA 244

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                   VQ+      +  H IG + A N+   + I            +A+  + P+  
Sbjct: 245 NP-----MVQISFNDETINSHLIGIYNANNINAAITIGHYFKISDKLIKEAIENYIPENN 299

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +       +    +I ++YNANP+SM+AAI+   Q+  +    +IA+LGDM E+GE S
Sbjct: 300 RSQLIE----KNGNKIILDAYNANPSSMQAAITNFIQLEDNS---KIAILGDMFELGEES 352

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  + E L   N    +  G    A K       ++ + E  + L  F++++     
Sbjct: 353 LLEHKKIIEFLVNENKITTYFIGKDFYANK---VNHSNLKFFENFEILSDFLKNNPPTNS 409

Query: 446 VVVVKSSNSCGFYRLINLL 464
           ++++K S      + + ++
Sbjct: 410 LLLIKGSRGMALEKTLQII 428


>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
 gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
          Length = 453

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 138/465 (29%), Positives = 203/465 (43%), Gaps = 24/465 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L+  + GH  G  P   V G ++DSR I   E F A+ G   DGHD++  A     
Sbjct: 5   SLSRLVADLGGHLRG--PDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSAA----- 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
                   ++       +P + V D  G L  L    R    AT I+A+TGS GKTT KE
Sbjct: 58  RTAGAAAALLERAVPEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGKTTVKE 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L+    T A  G+YNN +GVPLTL R+     + + ELG S  G+IR LT  VRP
Sbjct: 118 MLAAILARHGATLATSGNYNNELGVPLTLCRLQRRHRYAVLELGASAPGQIRRLTQWVRP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT   PAHL  F  +  +A  K E+FE L   G   +N DD+F  L +  +     
Sbjct: 178 SVGVITNAGPAHLDGFGSVAGVARGKGELFETLPDDGIAVINVDDAFANLWQRLARP--- 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +   +FG  + A+ +       +    +E++  G+ + V    +G H   N L +     
Sbjct: 235 RRCITFGLDRRAEVRAT----TAADGQLELRWDGRVLPVRLPLLGRHNQLNALASAATAL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L          L    P  GR          G   ++D++YNANPAS+ AAI VL++  
Sbjct: 291 ALELPGAAIRAGLEAMRPVPGRLCWRE---GIGGARILDDTYNANPASLAAAIRVLAE-- 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RR  VLGDM E+GE +   H    ++     +  +++ G    A           
Sbjct: 346 --NSQRRWLVLGDMAELGETAGRLHRRAGQLARAGGVERLFVIGELAAASAAGFGLGAEC 403

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              +  + L   +   L     V++K S S     + + L  + P
Sbjct: 404 --FDDREALVKALSGGLGPDIAVLIKGSRSAAMDIVADRLAADKP 446


>gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 468

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
          Length = 428

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 207/436 (47%), Gaps = 24/436 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      FFA+KG  +DG+ +   A+  G    V++                VD
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT----ILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G+ NNHIGV
Sbjct: 72  NVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D +  + E+G SH G+I+ L  + +P+  +IT +  AHL  F   E +   
Sbjct: 132 PLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFGSFEGVIKT 191

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ + +T G IF+N D+ + + +     A GI+ + ++G  + A F       C+ 
Sbjct: 192 KGELYDYMRRTKGKIFINQDNKYLKEI-----ANGIEQV-TYGSDETA-FAWGCVVSCNP 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E + QGK   V  H IG +   N L+ + +        +   +A++ + P   R +
Sbjct: 245 YLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERISRAIAAYEPTNNRSQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N+    LI ++YNANP+SMK A+   + +    +     +LGDM E+G  S   
Sbjct: 305 LKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSPKA---LILGDMRELGPTSDEL 357

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H ++   +   N   V+L G H                  T + L   ++ + ++G  V+
Sbjct: 358 HTEVVARIKEGNYDKVFLCGEHFQKAA-----GKDFTTYATTEELIEALRKNPLEGYHVL 412

Query: 449 VKSSNSCGFYRLINLL 464
           +K S+     R++ +L
Sbjct: 413 IKGSHGMALERVVEVL 428


>gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 609

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +A        + 
Sbjct: 199 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTDIADER-----IV 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YNNH
Sbjct: 250 KVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T+  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTILNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E + K  T F+  DD +   L           +   G +++ +F++  ++  
Sbjct: 370 FKAKTELLEFVNKENT-FVCGDDVYLAKL----------DVNKIGFNEDNNFRIESYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S     L GK  E+    +G H   N  + + +   +    +   + L        R
Sbjct: 419 DKGSKFT--LDGKEYEMSL--LGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIRV----GEDIYINDAYNASPTSMKAAIDTLNEI--YDDKYKIAILGDMLELGEDEV 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +H+++   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 529 KYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIRM 588

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           +  V+++K+S       +I
Sbjct: 589 EK-VILLKASRGTALEDII 606


>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 483

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 165/464 (35%), Positives = 230/464 (49%), Gaps = 9/464 (1%)

Query: 3   PLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           PLWT  ++     G           ++ I++DSR       F A+ G   DGHDF+  A 
Sbjct: 4   PLWTVDEICTHTSGIMAETAMVPAPIDHITMDSRMCRKGSLFVALPGAQADGHDFLAKAA 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              A   +V T  +    S+ +    V D L AL  LAVA R R K  +IAITGSVGKT 
Sbjct: 64  NADASAALVTTPDI----SIELAQIIVPDCLAALTALAVAGRNRFKGAMIAITGSVGKTG 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   L +  +++A  G++NNHIG+PL+LA +P    F I E+GM+H GEI  LT +
Sbjct: 120 TKEMLAHLLRACGQSHANEGNFNNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAKLTRI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP IA+IT IA  H  +F  I+ IA+AKAEIFEG+   GT  LN DD FF  L   + +
Sbjct: 180 ARPDIAMITRIAAVHSGHFESIDAIANAKAEIFEGM-HGGTAVLNIDDPFFPHLSQAAKS 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            GI  I +FG   +A+F L   +Q ++   +E  L G  +       G H A N L  L 
Sbjct: 239 AGISRIVTFGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVSFHLGMSGQHWAMNSLGVLA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V  L  D   A  +L+ F    GRG  +    N    ++ID+SYNA+PASM AA++   
Sbjct: 299 CVHALGEDPVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALAPFL 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             + H +   I VL DM E+G  S + H D+   ++     HV   G         +   
Sbjct: 359 TGARHTD---IMVLSDMLELGSHSAAAHDDIVATVASIGPRHVIAIGDDFAHAFAKVAHD 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V  +         +   +   D + +K S   G +R+ N +L
Sbjct: 416 CDVIIANDPAHATDMLARLVQADDTIFIKGSKGSGAWRVTNAVL 459


>gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
 gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
          Length = 423

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 130/437 (29%), Positives = 209/437 (47%), Gaps = 28/437 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ DSR I P   FFA+KG +++G+ +   A++KGA   +V+     +          V
Sbjct: 14  NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVTSEQT----ILV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L +L KLA   R +    II++TGS GKTTTKE++   LS    T A  G+ NNHIG
Sbjct: 70  NDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLNNHIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  D + GI E+G +H  EI FL+ +  P    IT    AHL  F GIE +  
Sbjct: 130 VPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGYITNFGKAHLEGFGGIEGVII 189

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E+++ L+     IF+N DD        +         Y FG S   D      +  +
Sbjct: 190 GKSELYDYLKASDKFIFVNGDD------TKQVERTQDANTYVFGGSDTYDL---SIEFLT 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               +   + GK ++     IG +   N+   + I +    + D   +A+  + P   R 
Sbjct: 241 ANPMVSCAVDGKKIQ--SQLIGSYNFSNIAAAIAIGTYFKVNSDDIKEAIEAYIPSNNRS 298

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N+    +I ++YNANP SMKAA+   S ++   +  +IA LGDM E+G+ ++ 
Sbjct: 299 QILTKNTNK----IILDAYNANPTSMKAALDNFSDLT---DTSKIAFLGDMFELGDSAKE 351

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + +  +   I  ++L G +   + ++    I +H   T + L     +   +   +
Sbjct: 352 EHQFINDYAASLEIEKIYLIGENF-GITNSTNEKIVIH--STFESLKENFPAL--ENSTL 406

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      R++ LL
Sbjct: 407 LIKGSRGMALERILELL 423


>gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 468

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 218/469 (46%), Gaps = 19/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-LH 59
           ++PLWT  ++ +A+ G  +   P G +     D+R++ P + FFAI+G ++D H+FI   
Sbjct: 48  ISPLWTVDEIAEAVNGTIVQRGPPGPI---CTDTRTLEPGQWFFAIRGENFDAHEFITPE 104

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              KG   V+ N             V    + L +L K+A  AR +    ++ +TGS GK
Sbjct: 105 LGHKGCVGVIGNWVCPNWDKGF---VEMGGETLTSLEKMANYARNKFHGCLVGVTGSAGK 161

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+ M+ + L S+   +   G+ NN IGV L+L  +P +V F + ELGM   GEI  L 
Sbjct: 162 TTTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMELA 221

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP I VI  +  AHL NF+ +EE+A AK EI    +      LN DD     L    
Sbjct: 222 RKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPV-- 279

Query: 240 HALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              G+K +  FG+    D +   +         + ++   + +E V    G H+AQN   
Sbjct: 280 -PHGVKKVL-FGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACA 337

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           T  +   L   +     +LS F P      R    + +    +I++ YNANP S KAAI 
Sbjct: 338 TAAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVSTKAAIE 394

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L  I    +G+R+A+LGDM E+G+     H  +  +    +   + L G   L   + L
Sbjct: 395 LLKNID--CKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFLRAAENL 452

Query: 419 P--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++ YS   + L   I   L   DV++VK S      +++  + 
Sbjct: 453 NLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVVAAIK 501


>gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
 gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
          Length = 504

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 198/441 (44%), Gaps = 24/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSRS      F A+KG  +DG+ F   A+QKG    VV+    A  G        VD
Sbjct: 82  VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAGDAR--FILVD 139

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA A R R    +I ITG+ GKTT+KE+++  LS     +A   +YNN +GV
Sbjct: 140 DALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNNDVGV 199

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + D  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 200 PRTLLGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLITNVGRAHLQGFGSFEGVKRT 259

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQC 266
           K E+++ L+   G +FLN  ++    +  +        I ++G+   AD   Q+      
Sbjct: 260 KGELYDFLKAHGGLLFLNESNADLTEMAEQRE---FDRIVTYGQDSTADVQGQVVSCAPF 316

Query: 267 SEQSWMEVQLQG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            + +W  +        + EV    +G +   NML  + +             AL  + P+
Sbjct: 317 LKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVTAQQVNHALENYIPR 376

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM E+GE
Sbjct: 377 NNRSQLTETAHNR----LIVDAYNANPSSMSAAIENFRLMQVEN---KMAILGDMRELGE 429

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +   L    I  VWL G      + A  +         ++ +   I+    +
Sbjct: 430 ASGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRK------FRDVEEVKAEIERRRPE 483

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN    + L  LL
Sbjct: 484 GHYILIKGSNGIKLFELPALL 504


>gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
          Length = 452

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 125/467 (26%), Positives = 204/467 (43%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        +     G   G      V  +S DSR     + F A++G  ++GH F+  A
Sbjct: 1   MLKELKLSQIADICGGTLFG--EDACVIDVSTDSRDDLSNKLFLALRGEKFNGHSFVDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+V+ D   S+     P   V + L A + +A   R   +  + +ITGS GKT
Sbjct: 59  IDQGASGVLVDVDSGVSLE----PRIVVHNTLLAYHDIARFLRDAFQGRVFSITGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K+ L  +L           ++NNHIGVP TL ++  +  F + E G S  GEI  L+ 
Sbjct: 115 SVKDWLAQSLEDFGCVLKTQSNFNNHIGVPKTLIQIENNHQFAVVEAGTSFPGEISILSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   + ++T  + +HL  F   + IA  K ++         + LN+DD FFE  K  + 
Sbjct: 175 TIHADVVIVTNASGSHLEGFGSTKAIAEEKGDLITYSSLYSKVILNFDDPFFEYWKGLT- 233

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G +  +SF  S  +AD  +      + +S   V  + +S  V     G H   N L  
Sbjct: 234 --GKREFFSFSLSDASADLYVSDLDLGASESSCIVHFRDQSSLVTIPAPGKHQVYNALAV 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G +  +      A+  +S     +G   R    L +    LID+ YNA+P S++AAI V
Sbjct: 292 IGALMHVDVHFIDALNKVSKAVQVKG---RMEFGLTKNNALLIDDCYNASPTSVEAAIDV 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS   P    ++  VLG + E+G+  +S H  L +  +   I  V   G       D   
Sbjct: 349 LSMQKPI---KKWLVLGALGELGDQEESIHRGLGKYAAEKKIDCVLAVGPIAGLAVDEFK 405

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +         + + L  F+  +L +   V+VK S S     ++N++ 
Sbjct: 406 KVGREGRVYASKESLAQFLL-TLNNEHAVLVKGSRSAKMDDIVNVIK 451


>gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
 gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
          Length = 468

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
 gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
          Length = 455

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 214/472 (45%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T   L  A+ G   G      V+ I  D+R++A  + F A+ G  +DGH+F+  A
Sbjct: 1   MIPV-TLSTLADAVGGTLNGA--DLMVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  +VV+  + ++     +P   V+D L AL ++    R       +AITGSVGKT
Sbjct: 58  EASGAAALVVSRPVDSA-----LPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM     + +  T A  G+ NN IGVP+TL  +  +  F + ELG +H GEIR+ + 
Sbjct: 113 SVKEMTAAIFAQVGPTLATRGNLNNTIGVPMTLLELTPEHRFAVIELGANHAGEIRYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  PH AVI  I  AHL  F GIE +A AK+EI+E L + GT  +N DD +   L  +  
Sbjct: 173 LALPHAAVINNIRGAHLEGFGGIEGVARAKSEIYEHLGEAGTAIVNLDDEWAPWLLER-- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299
            LG +  +++     AD       + ++  +  +  +G+  + V     G H   N L  
Sbjct: 231 -LGDQNRFTYSSRGPADLWASALSRDADGCYHFLLHRGEAEVLVRLPLPGRHQVDNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S     ++     L+      G   R +     G   LID+SYNAN AS  AAI +
Sbjct: 290 AALASTAELSLEQIASGLAQAPTVAG---RTQMTALSGEVMLIDDSYNANAASTMAAIDL 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +++     +G  + V GDM E+GE +++ H  +        I  +   G        A  
Sbjct: 347 MAE----RDGSSLLVFGDMGELGEEAEAEHRTVGRYAGEKGIDRLLTVGTLSRF---AAQ 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468
                 +      L   + + L        V++K S S     +   L E+ 
Sbjct: 400 EHDAARHFGDQAELLPTLMTELAALPRPVTVLIKGSRSARMENVAKALREQL 451


>gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei K96243]
 gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
 gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia pseudomallei K96243]
 gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
          Length = 468

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
 gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
          Length = 475

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 206/443 (46%), Gaps = 30/443 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI+ DSR+      F A+KG  ++G+ F   A++ G+   VV+    A  G        
Sbjct: 57  TGITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAGDTR--YIL 114

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R +    II ITG+ GKTTTKE+++  LS        +G+ NN I
Sbjct: 115 VDNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNLNNPI 174

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + + G+ E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 175 GVPLTLLRLTTEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVI 234

Query: 208 SAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L + G  TIFL+ D+ +   +     A G+  I ++G+  +          
Sbjct: 235 RTKGELYDYLRRQGNSTIFLHQDNPYLREI-----ARGLNPI-TYGEENSLYI---NGHV 285

Query: 266 CSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                ++  +     +G+  +V    IG +   N L  + I      + +   KAL+ + 
Sbjct: 286 TGNSPYLAFEWRAGKEGEFHQVHTRLIGEYNFPNALAAVTIGHFFGVEAEKIDKALNEYE 345

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +  + A N    TLI ++YNANP SM AAI     +      +++ +LGDM E+
Sbjct: 346 PRNNRSQLKKTADN----TLIIDAYNANPTSMLAAIGNFRNMQAE---KKMLILGDMREL 398

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S   H  + + L  Y    V L G    A      R  +  Y      L   +Q + 
Sbjct: 399 GKDSAEEHQRIVDYLEEYGFEDVILVGELFAAT-----RHTYTTY-PDAPALIAALQKNK 452

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN      +++ L
Sbjct: 453 PCGKTILIKGSNGIKLNTVVDYL 475


>gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
 gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 471

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 141/468 (30%), Positives = 244/468 (52%), Gaps = 14/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
           +W+  DL  A+       V    +  +  +S+ I P + F A++  +  DGH F+  A+ 
Sbjct: 5   IWSAADLTAALGVPVNVNVNVNGI--VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALA 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTT 121
           +GA  V+V+  +  +       +  V++ + AL++LA   R + K  T I ITGSVGKT+
Sbjct: 63  RGADAVIVSKLIDNNAND---KIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++    S+  KT+A   ++NN +G+ L LA +P++ ++ IFEL  S  G ++ L  +
Sbjct: 120 TKEIMFKVFSTYYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELSTSSPGGLQKLVKI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  +IAV+T I  AH   F+ +E +  AK EIF GL   G   +N D  F+       + 
Sbjct: 180 LPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINK 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           LGI  +++FG  + A+  +  +   ++  +S + +   G   +     +GY  A N+   
Sbjct: 240 LGINNVFTFGTHQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAV 299

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +I   +++   + ++     EGRGK Y    +     +ID+ YNANPASMK A+ +
Sbjct: 300 MLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L QI      R++A+LGDM E+G  ++  H++L   +  YNI HV   G  +  + + LP
Sbjct: 360 LGQIKAK---RKVAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVIAIGSLMKNVYELLP 415

Query: 420 RSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + + +   ++ L    +   L D D V++K SN    +++I  LLE
Sbjct: 416 AELKLSHYNNINELPVDQLLPLLHDKDYVLIKGSNRMRLWQVIENLLE 463


>gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis N1568]
          Length = 452

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR     + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P+ A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei NCTC 13177]
 gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
 gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
          Length = 468

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
 gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
          Length = 428

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 207/436 (47%), Gaps = 24/436 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      FFA+KG  +DG+ +   A+  G    V++                VD
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT----ILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G+ NNHIGV
Sbjct: 72  NVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  D +  + E+G SH G+I+ L  + +P+  +IT +  AHL  F   E +   
Sbjct: 132 PLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFGSFEGVIKT 191

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ + +T G IF+N D+ + + +     A GI+ + ++G  + A F       C+ 
Sbjct: 192 KGELYDYMRRTKGKIFINQDNKYLKEI-----ANGIEQV-TYGSDETA-FAWGCVVSCNP 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E + QGK   V  H IG +   N L+ + +        +   +A++ + P   R +
Sbjct: 245 YLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERISRAITAYEPTNNRSQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N+    LI ++YNANP+SMK A+   + +    +     +LGDM E+G  S   
Sbjct: 305 LKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSPKA---LILGDMRELGPTSDEL 357

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H ++   +   N   V+L G H                  T + L   ++ + ++G  V+
Sbjct: 358 HTEVVARIKEGNYDKVFLCGEHFQKAA-----GKDFTTYATTEELIEALRKNPLEGYHVL 412

Query: 449 VKSSNSCGFYRLINLL 464
           +K S+     R++ +L
Sbjct: 413 IKGSHGMALERVVEVL 428


>gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
 gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
          Length = 458

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 126/468 (26%), Positives = 201/468 (42%), Gaps = 23/468 (4%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
                 I G  I          +  DSRS+ P + F A++G  +D HDFI   V +GA  
Sbjct: 2   QQAAGWIAGARICGDGAVPFARVHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAA 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+V+ ++       ++P     D   AL +L    R +     +A+TGS GKTT KEM+ 
Sbjct: 62  VLVSREV-----DAAVPAIVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIA 116

Query: 128 IALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              ++     +  A  G+ NN IG+PLT+ R+       + ELGM+H GE  +L  + +P
Sbjct: 117 AIFAAAVGEDQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALG 243
            +AVIT     H      +E +A   A     L   G      D +S          A G
Sbjct: 177 TVAVITNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAAG 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + SFG ++ AD      +       M+V+  G + EV    +G H  +N L  +   
Sbjct: 237 TRRVLSFGTTQQADVHAT-VELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 V      L+ F P +G   R +         +ID++YNANP SM+AAI VL+  
Sbjct: 296 LAAGVHVPAIQAGLAEFKPVKG---RLQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGF 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +      R+ VLGDM E+G+   +FH ++        I  +W +G   +    A     +
Sbjct: 353 AAP----RVLVLGDMGEVGDQGPAFHDEIGAYAQARGIEVLWATGELAVHAVQAF--GAN 406

Query: 424 VHYSETMDGLFLFIQSS----LVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +  + + L   ++      +     V+VK S      R++  L+ +
Sbjct: 407 GRHFGSAEDLAKALEEDSGGMVAQAGAVLVKGSRFMRMERMVAALVAD 454


>gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
 gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
          Length = 466

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 132/437 (30%), Positives = 200/437 (45%), Gaps = 27/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+++G    V++    A  G+       VD
Sbjct: 55  VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGT-----ILVD 109

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L AL +LA   R + K  +I ITG+ GKTTTKE+++  LS    T    G++NNHIGV
Sbjct: 110 NCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNNHIGV 169

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ L H+  P   +IT +  AHL  F   E +   
Sbjct: 170 PLTLLRLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNVGKAHLQGFGSFEGVIRT 229

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L   G  TIF+  ++ +   +          T   +G++            CS
Sbjct: 230 KGELYDFLRAKGGATIFIQNENPYLNGIAE------GLTCVRYGQTAGLYVSGELI-SCS 282

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                    +G S EV  H IG +   NML    I        D    AL+ + P   R 
Sbjct: 283 PFLSFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDDISSALASYLPHNNRS 342

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +    A N+    LI ++YNANP SM AA+    QI       ++ +LGDM E+GE S+ 
Sbjct: 343 QLKETADNK----LIVDAYNANPTSMMAALKNFRQIEAPH---KMVILGDMKELGEASRE 395

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + + L       V L G    A   +     HV      D +   I+     G  +
Sbjct: 396 EHQKVVDYLKECGFDRVVLVGPEFAAATHSYQTFQHV------DEVLADIRMHKPQGYYI 449

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SNS     L+  L
Sbjct: 450 LIKGSNSMKLSLLLEYL 466


>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
 gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
          Length = 456

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 200/467 (42%), Gaps = 20/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    +  D            + +   V+G++IDSR + P + F AI G   DGHD++  
Sbjct: 1   MIAPLSVTDFAARCGAELHCEIDKLLEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEA 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+++GAG  +V   + ++     +P   V D   AL       R      ++ ITGS GK
Sbjct: 61  ALERGAGAALVQQQVSSA-----LPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT K ML   LS      A  G+ NN +GVPLTLA +  D ++ + ELG    G+I  L 
Sbjct: 116 TTAKNMLAEILSRAGSVVATKGNQNNELGVPLTLADLNNDTEYAVLELGAGKPGDIARLC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+IA++  +APAHL+NF  ++ I+  K  + + L   G   +N DD        ++
Sbjct: 176 EMARPNIAILLNVAPAHLANFGSLDAISKTKGALLDDLPADGLAVINADDPRVFDWHVRA 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                    +FG +  AD+Q    +      S   +Q   + +EV  +  G     N L 
Sbjct: 236 SPT---RCLTFGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L     T  + L+   P  GRG     A+     +LID++YNANP +++AAI 
Sbjct: 293 AAAVADALGISAITIREGLAAVKPAPGRGG---VAVLSPDASLIDDTYNANPVAVRAAID 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+       GRR  VLG M E+G   +  H +L        +  +W  G        A 
Sbjct: 350 VLAS----EPGRRRLVLGAMLELGLDEEKLHAELGVYAREAGLDELWAVGSEAAPAAVAF 405

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                         L  +  +        +VK+S        +N  L
Sbjct: 406 GEGALC--FTDTSELITYAPTLWGANTT-LVKASRGAQLEVAVNHWL 449


>gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 146/491 (29%), Positives = 211/491 (42%), Gaps = 31/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+QG  +                DSR I     F AI G   DGHD++
Sbjct: 1   MMPM-SLEEIAQAVQGRLVAGTAAANTPVATSAFTDSRQIVEGSVFIAIAGERVDGHDYV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIA 112
            H   +GA   +V+      I    +P   V+D + AL  LA     R +A     T++ 
Sbjct: 60  PHVGAQGAVAAIVD----HEIADADVPQIVVEDTVLALGLLAKHNIERRRALGTPFTVVG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+++   LS +  T A +GS+NN IG+PLT  ++  +  F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLMKALLSHMGSTVAPVGSFNNEIGLPLTSLKVNAETRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIHGLVPGGLSVLNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEV-QLQGKSMEVVHHGIGY 290
             + A +    +      G   N     +  +    +     +    G+  EV     G 
Sbjct: 236 AAMSAFAPGDVMWFGLPNGDGGNPAITAQHVRCDELDHPSFTLKNGDGEHAEVTLGICGQ 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNAN 349
           H   N L    +   L   +D    ALS                 Q   FTLID+S+NAN
Sbjct: 296 HNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTVNKQETSFTLIDDSFNAN 355

Query: 350 PASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P SMKA +  L +     E +  RIAVLG M E+G   +  H+ +        +  +   
Sbjct: 356 PDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHVGIGRYALEGGVDALLTV 415

Query: 408 GFHVLALKDALPRSI-----------HVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNS 454
           G    A  DAL  ++           HV +   +D     +        G VV++K S++
Sbjct: 416 GSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTRLAVEHPGAVVLLKGSHA 475

Query: 455 CGFYRLINLLL 465
            G   L     
Sbjct: 476 SGLSALAERWQ 486


>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
 gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
          Length = 471

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 196/449 (43%), Gaps = 21/449 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P   F  ++G  +DGH F+ +AV++GA    V  D   ++    +  + V+
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVARDCAHAVPDGLL-HWRVE 90

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R +  A ++A+TGS GKTTT+E++  AL+ +    A   + NN IGV
Sbjct: 91  DTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTTRELIRSALAPLGDVQASDSNNNNDIGV 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL     +    + E+GM   GEI  L+    P IAVIT I  AH+        IASA
Sbjct: 151 PLTLLGAHREHAAVVVEMGMRGAGEIERLSRCAEPQIAVITNIGTAHIGRLGSRAAIASA 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   L   G + +   D+  E   ++     I  +   G       ++         
Sbjct: 211 KCEITAALSPLGIVVIPAGDALLEDALSRCWTGRILRVALDGDEPENGPEVSGLTSGDLP 270

Query: 270 SWMEV--------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +   V         L    +       G H A+N ++ L +   L   + T         
Sbjct: 271 TPDLVGHFLPEDQSLAFNGLRFHCPLEGRHNARNFMLALAVAQELKVSLQTIQALD--VQ 328

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR +R       G   L+DE+YNA+P ++ AA+ +L+    H  GRR AVLG M E+
Sbjct: 329 VPGGRNRRLSL----GGIALLDETYNASPEAVFAALQLLA----HQPGRRYAVLGTMLEL 380

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           G  S   H  +A+      +  + +   G    A++ A          ET +   L +  
Sbjct: 381 GSRSVDLHRRVAQKAVDLQLDGLVVVAGGEEGEAMEVAAGSLSRFERVETPEQAALPLAE 440

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L  GD V++K+S      RLI  L    
Sbjct: 441 WLKPGDTVLLKASRGVALERLIPSLQNAL 469


>gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 203/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S G  ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGVRARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDALAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I      G  ++    +       + S + +      ++V  + +G H A+N L   
Sbjct: 239 GNRIVDFALHGLGRDTPAAVTGV---LDGSRLAIDTPDGRVDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +    AL      T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G   L   +A  
Sbjct: 356 LAACSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACEAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S   H+ +    +   +         ++VK S      R+++ L  E
Sbjct: 412 ASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
 gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
          Length = 496

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 141/480 (29%), Positives = 216/480 (45%), Gaps = 25/480 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++     G   G  P      +  DSR       + A  G H DGHDF+  A
Sbjct: 1   MIAL-TAAEIADITHGRLTG-DPDIVPTSVVTDSRESTHGSLYVAKPGEHADGHDFVDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---------TII 111
            ++GA LV+   ++  + G    P   V+D + A+  LA  +  R +A         T+I
Sbjct: 59  FERGAVLVLGEREVTDADGRPF-PAVVVEDAVLAMGALAAESVRRIRAERASRGEDFTVI 117

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK++L   LS+   T A  GSYN  +GVPLT+        F + E+G + 
Sbjct: 118 GITGSAGKTTTKDLLAGVLSTAGATVAPQGSYNGEVGVPLTVFAADATTRFLVIEMGATG 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           LG I++L  +V+P I V+  +  AH   F G+E IA  K E+ E L + GT  +N DD  
Sbjct: 178 LGHIKYLAEMVKPDIGVVLVVGTAHAGEFGGVENIAKTKGELVEALSEHGTAVINLDDGR 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQ--GKSMEVVHHGI 288
              ++A++ A  +   ++   +   + + R      +     ++ L   G ++EV    I
Sbjct: 238 VAAMRARTKAKVLG--FTSSPATTEEVEARNVVVNGQGFPDFDLVLPDGGPAVEVRSRLI 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L                  A S+         R          T+I+++YNA
Sbjct: 296 GGHHVTNLLAAAAAAFAAGIPAADI--ATSLSSQSAASRWRMERTERADGVTIINDAYNA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM+AA+  L+ +      R  AVLG M E+GE S   H  +   +   NIS + + G
Sbjct: 354 NPESMRAALRSLADL--GQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVG 411

Query: 409 FHVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               AL               ++ET++  +  +Q  L  GD+V+ KSSN  G   L + +
Sbjct: 412 REARALYISAIQEGSWGDECSFTETVEEAYELLQRELEPGDLVLFKSSNGVGLRHLGDRI 471


>gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
 gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
          Length = 468

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 202/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHTLGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +  R A       T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       DA  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 412 AGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis TXDOH]
          Length = 468

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 204/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S G  ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +   A  G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGERARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDALAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +      G  ++    +       + S + +      ++V  + +G H A+N L   
Sbjct: 239 GNRLVDFALHGLGRDTPAAVTGV---LDGSRLAIDTPDGRVDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +    AL      T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G   L   +A  
Sbjct: 356 LAACSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACEAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S   H+ +    +   +         ++VK S      R+++ L  E
Sbjct: 412 ASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 488

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 210/476 (44%), Gaps = 24/476 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++     G  +   P      +  DSR       + A  G + DGHDF+  A   G
Sbjct: 4   FTAAEIADITNGR-LDAEPGITPLSVVTDSREATQGSLYVAKPGENADGHDFVGSAFAAG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---------ATIIAITG 115
           A L +V   +++  G    P   V D + A+ KLA  +  R +          T+I ITG
Sbjct: 63  ATLALVEHPVLSPDG-TPYPSVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVIGITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++L   LS+   T A  GSYN  IGVPLT+     D  + + E+G + +G I
Sbjct: 122 SAGKTTTKDLLAGILSAHGTTVAPKGSYNGEIGVPLTVFTAGTDTRYLVIEMGATGIGHI 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  +V+P I V+  +  AH   F G+E IA AK E+ EGL  +GT  +N DD     +
Sbjct: 182 SYLVDMVKPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEGLAASGTAIINLDDERVAAM 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH--HGIGYHM 292
           +A++ A  +   ++      A  Q       +E +   ++ L G           IG H 
Sbjct: 242 QARTSASVLG--FTAEGRPGAAVQALNADTNAEGNPEFDLLLPGGDTPHHVSSRLIGAHH 299

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L             +    ALS          R          T+I+++YNANP S
Sbjct: 300 TGNLLAAAAAAWAAGVSGEDIAAALSSQAAASRW--RMERTERADGVTIINDAYNANPES 357

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+AA+  L+ +      R  AVLG M E+GE S   H  +   +   NIS + + G    
Sbjct: 358 MRAALRTLADL--GQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREAR 415

Query: 413 ALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           AL               ++E  +  +  + + L  GD+V+ KSSNS G   L + +
Sbjct: 416 ALYVSAVQEGSWGDECIFAEDAEEAYELLSAELEPGDLVLFKSSNSVGLRHLGDRI 471


>gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 477

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 252/475 (53%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A  G +          G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDEAAAATGGCATRAFAA---TGVSIDTRSLGPGDLFVALADQR-DGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSRRPGGLPED--APLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+  + +FG++ +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
 gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
          Length = 482

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 195/472 (41%), Gaps = 24/472 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L            P     G++IDSR + P   F A  G   DG+DF L A++ GAG VV
Sbjct: 9   LESTTGARLAAGDPDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVV 68

Query: 70  VNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +  D    +          V   DD    L +LA   R R + T+I +TGS+GKTTTK++
Sbjct: 69  MTRDPEDEVVAMARDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDV 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS   + +A  G+YNN IG+PLT+   P D    + E+GM+  GEI  LT   +P 
Sbjct: 129 LAACLSKRYRVHATAGNYNNLIGLPLTILSAPADTQMLVLEMGMNDFGEISRLTACAQPT 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--------TIFLNYDDSFFELLKA 237
             +IT +  +H+      E IA AKAEI EG+  +          + L+ +D F   +  
Sbjct: 189 FGIITKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYIIE 248

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQL-QGKSMEVVHHGIGYHMAQN 295
           +        +   G S + D      +   +  +  ++    G S +      G     N
Sbjct: 249 RYARPAGIDVVLAGTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPGAQSVPN 308

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   L        +A +        G+R +         +ID+SYNA+P SM A
Sbjct: 309 ALFAAAVAHRLGVPAFEIDEAFASLEMT---GRRAQVRHAACGARVIDDSYNASPESMAA 365

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            + +L  +     G RIAVLG+M EMG+ +   H       +      +   G  +    
Sbjct: 366 GLDLLGSLP--CSGTRIAVLGEMGEMGDEAPRLHALTGAYAAAKRPGLLICVGGELADEM 423

Query: 416 DALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            A  R        V    + D L       L   D+V+VK S   G  R + 
Sbjct: 424 AAAARLMGMDEGDVQVVPSCDVLIKRFAGVLGVRDLVLVKGSRFVGLDRFVE 475


>gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
 gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
          Length = 609

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 206/439 (46%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +A        + 
Sbjct: 199 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTDIADER-----IV 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YNNH
Sbjct: 250 KVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E + K  T F+  DD +   L           +   G +++ +F +  ++  
Sbjct: 370 FKAKTELLEFVNKENT-FVCGDDVYLAKL----------DVNKIGFNEDNNFIIESYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S     L GK  E+    +G H   N  + + +   +    +   + L        R
Sbjct: 419 DKGSKFT--LDGKEYEMSL--LGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIRV----GEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGEDEV 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +H+++   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 529 KYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIRM 588

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           +  V+++K+S       +I
Sbjct: 589 EK-VILLKASRGTALEDII 606


>gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
          Length = 952

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 192/441 (43%), Gaps = 21/441 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S D+R I P E F A+ G ++D H+++  A  +G         +  ++    +P  
Sbjct: 513 VSGVSTDTRRIGPGELFVALVGENFDAHNYLDQAEGRG----ACAAVVAHAVSDSKLPQL 568

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSY 143
            + D   AL ++  A R +    ++A+TGS GKTTTKEM++  L+  +      A  G+ 
Sbjct: 569 VLGDTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAMLAEWQGESGRLATAGNL 628

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +    +FELGM+H GEI  L  +  P + ++T     H      +
Sbjct: 629 NNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQEFMHTV 688

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A         L   G      D+ +  +  A +     + +  FG     D    + 
Sbjct: 689 EAVAHENGAAIAALPDDGVAVYPGDEPYCAIWDALAEP---RRVLRFGLQPGLDVYAEQI 745

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               + +   V       ++     G H  +N L  +         +D A++ALS F P 
Sbjct: 746 LADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRALSRFAPV 805

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R +         LID++YNANP S++ AI VL++I+    G R+ VLGDM E+G+
Sbjct: 806 AG---RMQHKKMSDGTLLIDDTYNANPDSVRVAIDVLARIA----GTRVLVLGDMGEIGD 858

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H ++        +  +        +   A       H   ++D +   ++  L  
Sbjct: 859 NGPALHAEVGNYAREQGLDALIT--LGEASRAAAAAYGAGAHACASVDEVVAALRG-LRP 915

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              V++K S      R++   
Sbjct: 916 SS-VLIKGSRFMRMERVVTAF 935



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 170/488 (34%), Gaps = 50/488 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+ T  + +  +               + +DSR I P + F A  G   DG  +I  A+
Sbjct: 9   TPVATVAETVAWLHARV------SLTAHLKLDSRDIEPGDVFVACPGLSSDGRLYIDKAL 62

Query: 62  QKGAGLVVVNTDMVASIGS-----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             GA  V+       ++ +       +PV G+  +LG L       R  +   ++A+TG+
Sbjct: 63  ALGASAVLFEAPGSDALQAAAGSTPMLPVTGLRALLGELADTW-YGRPSAALAVVAVTGT 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------------ARMPVDVD 161
            GKT++ + +  ALS   K    IG+    +    TL                    D  
Sbjct: 122 NGKTSSVQWIAHALSRNDKPCGTIGTLGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAG 181

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                +  S +G  +     VR  +A  T +   HL     +E   +AKA +F       
Sbjct: 182 AQAVAMEASSIGIEQGRLDGVRVALAAFTNLTRDHLDYHGTMERYEAAKARLF-NWPGLT 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGK 279
              +N DD     L A          YS   S +  A  + R  +  S+     +     
Sbjct: 241 AAVVNADDEAGRRLLATLPTGMAAMGYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHG 300

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CAL 334
             ++V   +G H   N+L+  G++  L        + L+   P +GR +           
Sbjct: 301 EAQIVTRLLGAHNVSNLLLVAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQS 360

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + G   L+   Y   P ++  A++ L  ++    GR I + G     GE       ++  
Sbjct: 361 SAGRGALVVVDYAHTPDALSRALTALRAVAVARSGRLICLFGC---GGERDPGKRPEMGR 417

Query: 395 VLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +     HV +S  +            +   +P + +V          +    S    D
Sbjct: 418 IAAQL-ADHVVVSSDNPRTESPQDIIDQILAGIPPAANVDVQVDRARAIMQTIWSASPDD 476

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 477 VVLLAGKG 484


>gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis WUE 2594]
          Length = 452

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQMVAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M6190]
          Length = 436

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 200/450 (44%), Gaps = 22/450 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++    
Sbjct: 4   ESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                VDD L AL  LA A R      +  ITGS GKTT KEML   L          A 
Sbjct: 63  ---LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +   +FG     D 
Sbjct: 180 GFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTR---TFGIDSG-DV 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                         ++    +   VV    G H   N      +       ++   + L 
Sbjct: 236 HAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLK 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMKAAI VL+++       RI V+GDM
Sbjct: 296 GFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAP----RIFVMGDM 348

Query: 379 CEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE  + + H ++        I   +  G + +   +         +    D L   +
Sbjct: 349 GELGEDEAAAMHAEVGAYACDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQVL 406

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  L +   V+VK S       ++  L ++
Sbjct: 407 RHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 477

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 252/475 (53%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A  G +          G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDEAAAATGGCATRAFAA---TGVSIDTRSLGPGDLFVALADQR-DGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSRRPEGLPED--APLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+  + +FG++ +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL   ++  F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
 gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
          Length = 465

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 135/476 (28%), Positives = 209/476 (43%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + +   G   G   P+  V G + IDSR++ P   F AI+G   DGHDF  
Sbjct: 1   MIPL-PLARIAEITSGALAGMADPRAVVRGPVVIDSRAVEPGSLFVAIRGDRVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSV 117
            AV+ GA  V+ +         +  P   V D + AL  LA A        T+I +TGS 
Sbjct: 60  QAVEAGAVAVLASRP-------VDAPAVVVGDTVTALADLATAVCADLPSTTVIGVTGSA 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L    + I  T A + S+NN IG PLT+ +   D  + + EL     G I  
Sbjct: 113 GKTSTKDLLARLTARIGPTIAPVESFNNEIGHPLTVLKAGEDTRYLVLELSARDAGHISH 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P I V+  +  AHL  F G + IA AK E+ E L   G   LN DD     +  
Sbjct: 173 LARIAPPRIGVVLNVGTAHLGVFGGKDAIAKAKGELVEALPADGVAVLNADDPLVAAMAR 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++ A     +  +G++++A  +           +   ++    +  VV    G H  +N 
Sbjct: 233 RTDA----RVAWYGRAESAAVRAEGVTLDDRGRAAFTLRTPSGAAPVVLRLYGEHAVENA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L        L   V T  + LS   P+     R          T+I+++YNANP SM+AA
Sbjct: 289 LAAAAAAYELGLPVATIAEELSEAEPRSRW--RMEVTDRADGVTVINDAYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
              L  ++     RR AV+  + E+GE S + +  +  + +   +  +++ G        
Sbjct: 347 FGALDALAG--GRRRFAVIAALRELGEESAALNEGVGRMAAGAGLEGLFVVGPDAGPVLA 404

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              A  D +P +  V +          + + LV GDVV+VK   + G  R+   L+
Sbjct: 405 GAGAAVDGVPSATRVTHVADAQEAAAALSALLVPGDVVLVKGPRAAGLERVAAALV 460


>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 480

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 216/485 (44%), Gaps = 35/485 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+     +
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAITGSVG 118
           GA + +V+      + S  +P   V D + AL +LA         L     II +TGSVG
Sbjct: 61  GATVAIVD----HEVKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI  L
Sbjct: 117 KTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     +   
Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHVVPMAGL 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGYHMAQ 294
           ++      +  FG   + + ++R     +++S    +  V   G    V     G H   
Sbjct: 237 ANG----DVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASM 353
           N L    +        +T  + L+  H              +G  FTLID+S+NANP SM
Sbjct: 293 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 352

Query: 354 KAAISVLSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           KA ++ L   + +      R+A+LG M E+G    + H  +        I  +   G   
Sbjct: 353 KAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQ 412

Query: 409 -FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             H+ AL  AL              VH  +  + L + +  +     VV++K S++ G  
Sbjct: 413 DQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARN-HPDAVVLLKGSHASGLS 471

Query: 459 RLINL 463
            L   
Sbjct: 472 ALAER 476


>gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 415

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 124/431 (28%), Positives = 201/431 (46%), Gaps = 21/431 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++    +G +
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDR 234

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 235 QVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++ 
Sbjct: 295 AVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V  +G     +  A   S   
Sbjct: 352 ----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVG 404

Query: 425 HYSETMDGLFL 435
            +      L  
Sbjct: 405 EHFADKAALIA 415


>gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           sp. RS-1]
 gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseiflexus sp. RS-1]
          Length = 490

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 129/500 (25%), Positives = 205/500 (41%), Gaps = 45/500 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
             +    ++L+ +Q  +    P       Q   +   IDSR    +  F A++G   DGH
Sbjct: 4   TAVLQLDEVLRGVQAEADRRKPSLPPALMQVAFSEAVIDSRQATSECLFVALRGERVDGH 63

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG--------------------SLSIPVFGVDDVLGA 94
           +F+  A  +GA   +V  D ++++                       S+ +  VDD   A
Sbjct: 64  EFLADAAARGARGALVRRDKLSNLSLERPYAVIDPVTGEGLEQATPDSVLLIAVDDPQAA 123

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           LN+LA   R +    +I +TGSVGKT+TKE+    L    +T     SYN+   +P+ L 
Sbjct: 124 LNRLAAYHRGKYHPVVIGVTGSVGKTSTKEVTASVLQRSFRTLKSPRSYNSEASLPIVLL 183

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           ++  D    + E+GM   GEI  L  L RP + ++T + P+HL     IE I  AK+E+ 
Sbjct: 184 KLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSELP 243

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME 273
           + L   G   LN DD     +   + A      + +G    AD      +    +     
Sbjct: 244 QALPDDGFAILNIDDLRVRAMAEVTRARP----FFYGLDPAADLWADSIESRGLQGISFR 299

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V  QG +  +    +G H     L       +L  + +  I  L      E    R    
Sbjct: 300 VHYQGDAFYLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRD----ESAQLRLLAV 355

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 TLID++YNA+PASM AA      +    EGRRIA+LGDM E+G + +  H  + 
Sbjct: 356 PGVNQTTLIDDTYNASPASMLAA----LNLLAELEGRRIAILGDMLELGSVEEEAHRRVG 411

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++      +   G     + D   ++      V   +  D       S L  GD+V++
Sbjct: 412 ARVAEV-ARFLITVGRRARWIADEALQAGMAPDQVWSVDDNDEAADLAMSCLAPGDIVLI 470

Query: 450 KSSNSCGFYRLINLLLEEFP 469
           K S       ++  L +  P
Sbjct: 471 KGSRGMLMESIVARLQQRRP 490


>gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 464

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 215/475 (45%), Gaps = 25/475 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +    +     G      V  ++ DSR++ P + F A++G  +DG  F   A+Q+
Sbjct: 7   MMRLSEAAAMLGVPLPGA--DAEVVRVTTDSRTLRPGDLFVALRGERFDGGAFAAQALQQ 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV++      +         VDD   AL +LA A R R    ++AITGS GKTT K
Sbjct: 65  GAAGVVLDRAQAPDLAQA----LRVDDTRLALGRLAQAWRQRFAIPLVAITGSNGKTTVK 120

Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML   L              G+ NN IGVPL L R+     + + E+GM+H GEI +LT
Sbjct: 121 EMLAAILRVEAGDAAAVLHTEGNLNNDIGVPLMLLRLRDHHQYAVLEMGMNHAGEIDYLT 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP IA++     AH+     +E IA AK EIF GL   G    N DD    L +  +
Sbjct: 181 RLARPDIAIVNNALTAHIGFLGSVENIARAKGEIFNGLTDAGIAVFNADDPHAGLWREAN 240

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + +  FG       +   ++     S + V L   ++++     G H   N L  
Sbjct: 241 RQ---RCVVDFGLVHATSVRG-DYRADEFGSALTVTLPNATLDIALQVPGEHNVMNALAA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L     + +  L+ F   +GR +R          T+ID++YNANP S+KAA++V
Sbjct: 297 VAGAFALDVSHRSVVAGLAGFGGVKGRLQRKAALH---GSTVIDDTYNANPDSVKAALAV 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q      G++I VLGDM E+G+ + S H ++        +  +   G    A   A  
Sbjct: 354 LAQQP----GKKIFVLGDMGELGDDAASMHEEIGVAARAAGVGRLLALGDLSCATVAAFG 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE--EFPAIQ 472
                 + E ++ L   +++ L  G VV+VK S      R++    E  + P +Q
Sbjct: 410 TG--AMHFERIEELLAELENELAPGTVVLVKGSRFMQMERVVKSFTEASDAPGMQ 462


>gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
 gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae]
 gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
          Length = 428

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 216/439 (49%), Gaps = 27/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +SID+R I     FFAIKG ++D + F   A+  GA  VV++ +              
Sbjct: 14  QSLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYFIDDRT----IL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +L+   R   K  I+A+TGS GKTTTKE++ + LS   KT A IG+ NNHI
Sbjct: 70  VNNSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     + + GI E+G +H  EI FL  + +P    IT    AHL  F G++ + 
Sbjct: 130 GVPLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGYITNFGKAHLEGFGGVQGVI 189

Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQ 265
             K+E+++  L+   T+F+N +D           + GIK  ++FG +K  AD +++  + 
Sbjct: 190 EGKSEMYQYLLKNNKTVFVNLEDPI-----QIEKSTGIKN-FTFGVNKESADLKIKNIQA 243

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                   V ++ +  +V  H IG + A N+   + I      +     +A+  + P   
Sbjct: 244 NPF-----VVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVEDALIKEAIENYIPANN 298

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +    +G   +I ++YNANP+SM  AI+   Q+       +I +LGDM E+G  S
Sbjct: 299 RSQLLK----KGSNEIILDAYNANPSSMAVAITNFLQLENQN---KIMILGDMFELGNES 351

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  + + LS  N S  +L G    +  +    + ++ + ET D    ++++     +
Sbjct: 352 HEEHKAIVDSLSNQNKSKCYLIG---KSFYENKISNENIQFYETFDAFAAYLKTIEFKDN 408

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      R ++ +
Sbjct: 409 TILIKGSRGMALERTLDYI 427


>gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 452

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R    +     TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKVGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
          Length = 455

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 204/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ +  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQALN--LPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL + G   +  +D    + +
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGEDGLALIPCEDEHAVVFQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S     +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TTSQDHQQR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +D   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLDDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++S      RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMSAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L  +
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTNK 452


>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 128/456 (28%), Positives = 204/456 (44%), Gaps = 39/456 (8%)

Query: 24  QGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           Q ++N  G+S D+R+I P   +FA+KG  ++G+ F   A+ KGA   V++          
Sbjct: 7   QRYINSAGVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT 66

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VDDVL  L +LA   R + K  +I ITGS GKTTTKE++   LS      A  G
Sbjct: 67  ----LLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQG 122

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN+IGVPLTL  +  + D  I E+G +H GEI FL  +  P    IT+I  AHL  F 
Sbjct: 123 NLNNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFG 182

Query: 202 GIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             E +   K E+++ L+    TI  N D+   E L           +YSFG  +  +   
Sbjct: 183 SFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLE-----NYNNVYSFGVGEGVNVSA 237

Query: 261 RK-----WKQCSEQSWMEVQLQGKSMEV----------VHHGIGYHMAQNMLMTLGIVSI 305
           +       K     S ++   +G    +            H +G +   N+  ++     
Sbjct: 238 QCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRY 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    K +  + P+  R +  +     G  T++ ++YNANP+SM AAI  L  ++ 
Sbjct: 298 FKLSTKAIQKGIESYIPQNNRSQLLQW----GSNTVLLDAYNANPSSMTAAIDNLLSMNS 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                ++ +LGDM E+G+ +   H  + + L  +  + V+L G +    K   P+     
Sbjct: 354 FPN--KVLILGDMFELGDYATQEHQSIVDKLKEHQWAGVYLIGKNFKQTKAPYPQ----- 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             ET +      +       ++++K S      RLI
Sbjct: 407 -YETFEEFREVFKKLSFQDSLILIKGSRGMALERLI 441


>gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 120/433 (27%), Positives = 187/433 (43%), Gaps = 19/433 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DL   + G           +GIS DSR+      F A++G  +D H F+        
Sbjct: 4   TLSDLQPWLAGARANG--DASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMDGLA---- 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              V    +      + IP   V D   AL  +A   R +    +I +TGS GKTT KEM
Sbjct: 58  ARGVAAVVVERVPKGMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEM 117

Query: 126 LTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           L   L +        A  G++NN IGVPLT+ R+       + ELGM+H GEI  L+ + 
Sbjct: 118 LAAILGTALGADHFLATRGNFNNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + ++      H      +E +A     +   L   G      DD +  L +  + A+
Sbjct: 178 QPTLGLVNNAQREHQEFMVSVEAVAKENGAVISALPANGIAVFPADDPYAPLWRGLATAI 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + + +FG S +AD     WK     S ++V+   ++  V     G H  +N L  +  
Sbjct: 238 GQRKVMTFGFSDDADVSCS-WKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIAC 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  ++ L+ F P  GR +R   A       +ID++YNANP S++AAI VL+Q
Sbjct: 297 ALGIGIGIDAIVRGLAAFAPVNGRLQRKHAAS---GAQVIDDTYNANPDSVRAAIEVLAQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                   R+ VLGDM E+G   + +H ++        I H++  G        A     
Sbjct: 354 APSP----RVLVLGDMGEVGNDGRQYHEEVGAYARGRGIQHLFTLGQLAQHSGSAF--GA 407

Query: 423 HVHYSETMDGLFL 435
           H  +   ++ L  
Sbjct: 408 HARHFNDIEALPA 420


>gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
 gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
          Length = 476

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 165/465 (35%), Positives = 230/465 (49%), Gaps = 14/465 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  ++  A  G   G      + G++ +SR I   + F A+KG   DGH+F  +A 
Sbjct: 7   RPLWTAAEVAAATGGVLHGD--DRPITGLTYNSREIVAGDLFLALKGAR-DGHEFAANAF 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120
             GA   +V   +             V D L  L  L VAAR R       A+TGSVGKT
Sbjct: 64  AAGAAAALVERPVEGGAS------VVVPDTLHGLEALGVAARERAPHVKRGAVTGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +  + +   L      +A I SYNNHIGVPLTLARMPV+    +FE+GM+  GEI  L+ 
Sbjct: 118 SVTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMPVETRRAVFEIGMNAPGEIAPLSR 177

Query: 181 LVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            V PH A +TT+ P H+     G   +A  KA IF+GL   GT   N D +F  +L   +
Sbjct: 178 FVAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGTAVANGDVAFSGVLCDAA 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A+G + +  FG     D +L  ++  +E + +  +L G+ ++      G H   N L  
Sbjct: 238 RAVGARLVV-FGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  L   ++T ++AL+ F P  GRG+    A+  G FTLIDESYNANP SM A    
Sbjct: 297 LLMLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKS 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        GRRI VL DM E+G+ S + H  LA+ +    +  V  +G  +  L DALP
Sbjct: 357 LGARPTA--GRRIVVLTDMLELGDQSHALHEGLAQPIEAAGLDLVHAAGPEMRRLYDALP 414

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            S    + ET   L     +    GD+V+VK SN      +   L
Sbjct: 415 ASRRGLWRETAVELAAEASALAEAGDIVMVKGSNGSRASLIARAL 459


>gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
 gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
          Length = 519

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 134/533 (25%), Positives = 217/533 (40%), Gaps = 81/533 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA-------------FFA-- 45
           MN +    ++   +QG  +G      ++ +SID+R+I P +              F A  
Sbjct: 1   MNMM--LSEIAACVQGKLVG--EDVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEA 56

Query: 46  -------------IKGPHYDG-HDFILH-------------AVQ---------------- 62
                        I     DG HD                 A+                 
Sbjct: 57  EQAGAVAAIVHQGITATAIDGGHDCSRQSSAFPPSMEVRSVAISTTAWKQDDCKDAGGRA 116

Query: 63  -KGAGLVVVNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +GA   V          +   +IP   VDD   AL +LA   R ++  +++ ITGS GK
Sbjct: 117 TQGAVAEVEQRMEQLPRELMRPTIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGSNGK 176

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEM+   LS    T    G+ NN IGVPLTL R+     + + E+G +H GEI + +
Sbjct: 177 TTVKEMVAAILSVNADTLFTQGNLNNDIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTS 236

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              +  +A+IT +  AH+  F  I+ +A AK EI + L++ G   LN DD++F+  K+ +
Sbjct: 237 QYAQADVAIITNVGAAHIEGFGSIDGVAKAKGEIIQTLKQDGVAVLNRDDAYFDYWKSIA 296

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQ----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              G + + SFG  + AD      K      +  +  E+      + V     G H   N
Sbjct: 297 ---GTRKVISFGIDERADVTAHSVKTEIINHAFATTFELVTAKGELTVKLKLAGRHNVVN 353

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L        L  D+    + L    P  GR +     L      +ID++YNAN AS+KA
Sbjct: 354 ALAAATACLALDTDLQQIKQGLESVKPVTGRLQPLVSRL---GNIVIDDTYNANSASLKA 410

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            + VL+    + +G+R  VLG   E+G  S   H  + E++    +  +   G       
Sbjct: 411 GLDVLA----NCDGKRWLVLGAFGELGPDSPKIHEQMGELIKSSGVVRLLAVGSDAGNTV 466

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                     + +T + L   ++  L   + +++K S +     ++  L+E F
Sbjct: 467 KIFGEG--ATFFDTQNDLIEMLKQELKGDEAILIKGSRAQRMENVVAALVENF 517


>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 459

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 201/472 (42%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHDFILH 59
           M PL +   +  A  G      PQ  V G++ DSR ++P + F A++G    DGHDF   
Sbjct: 1   MQPL-SLAQIAAAAGGQVSDADPQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPS 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           AV+ GA  V+           L +P   VDD L AL   A A     S+  ++A+TGS G
Sbjct: 60  AVRAGAVAVLAARP-------LDVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS+NN IG+P+T      D    + E+G    G I +L
Sbjct: 113 KTSTKDLIAQVLQRAGATVFTQGSFNNEIGLPITALEATADTRHLVVEMGARGQGHIAYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELL 235
           T +  P I  +  +  AH   F G E  A AK E+ E L    + G   LN DD+    +
Sbjct: 173 TQITPPRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
            A++ A     + +FG  ++AD          +  +   +        V    +G H   
Sbjct: 233 SARTKA----RVVTFGVERSADVYATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVP 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +      D     KAL+          R R        T+++++YNAN  S  
Sbjct: 289 NALAAAAVAEAAGMDAAQIGKALTAAESLSEG--RMRVTERPDGVTVVNDAYNANADSTA 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLA 413
           AA+  L+ +     GR IA+LG+M E+G  S   H  +  + ++  I  +   G      
Sbjct: 347 AALRALAHLGRERAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLVAVGEGDARV 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLL 464
           L         V    T      ++   +   GDVV+VK SN+ G   L + L
Sbjct: 407 LATEYGPDGRVE--ATKAAAGEWLSRYNFRAGDVVLVKGSNALGLGELADAL 456


>gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
 gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
          Length = 479

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 28  MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 84

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGSVGKT
Sbjct: 85  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 140

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 141 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 200

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 201 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 260

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 261 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 317 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 373

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 374 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 429

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 430 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 479


>gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
          Length = 468

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 203/468 (43%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S G  ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGVRARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDALAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I      G  ++    +       + S + +      ++V  + +G H A+N L   
Sbjct: 239 GNRIVDFALHGLGRDTPAAVTGV---LDGSRLAIDTPDGRVDVRLYALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +      L  F P +GR +    AL      T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G   L   +A  
Sbjct: 356 LAACSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACEAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S   H+ +    +   +         ++VK S      R+++ L  E
Sbjct: 412 ASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
          Length = 446

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 147/467 (31%), Positives = 204/467 (43%), Gaps = 25/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL    ++ + + G + G         + +DSR   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-GLGEIAEIVGGKATGESVTVTAPAV-LDSRQAEPGGLFVAFAGEHADGHDYAERA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            + GA  V+ +          S+P   V+DV  AL  LA    ARLR   T++ +TGS G
Sbjct: 59  GRAGAVAVLGSRP-------TSLPTVVVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TK++L   LS    T A  GS NN +GVPLT+ R      F + E+G  H G+I  L
Sbjct: 112 KTGTKDLLAAVLSGAGPTVATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAEL 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV P IAV+  +  AHL  F     IA AK E+ +GL   GT  LN DD     +   
Sbjct: 172 TGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASM--- 228

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              L    + +FG++  AD Q+              ++    S  +    +G H A N  
Sbjct: 229 -SVLTDGPVLTFGRTDPADVQVLDVVLDRLGRPSCTLRTVDTSARLALPLVGAHQALNAS 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       +D A  AL+       R +    A      TL+++SYNANP S +AA+
Sbjct: 288 AAAAAALAAGVPLDLATTALTTASLSPWRMELRDLAC---GATLLNDSYNANPDSTRAAL 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             LS I     GRRIAVLG+M E+G+ S++ H       +      V   G     L D 
Sbjct: 345 DALSAI---EGGRRIAVLGEMLELGDGSEAEHRA-VGAYAAARADVVVAVGEAARPLADG 400

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        D    +++  L  GDVV+VK+S       +   L
Sbjct: 401 A--GERAVVLAGNDAAVDWLRDHLAAGDVVLVKASRGARLDEVAAGL 445


>gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis OX99.30304]
          Length = 452

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+I     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALINNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax
           ebreus TPSY]
 gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           ebreus TPSY]
          Length = 482

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 198/470 (42%), Gaps = 20/470 (4%)

Query: 2   NPLWTFH---DLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           +P+ T     DLL+A I G  +       +  +  D+R++A  + F A+KG  +D H F+
Sbjct: 8   SPMMTLQQAFDLLRARIPGARLIGEGATPLARVHTDTRTLAAGDLFVALKGERFDAHQFL 67

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A               A +    +P   V D L AL  LA   R +    +IA+TGS 
Sbjct: 68  SQAR----TAGAAAAIAHAGLADAGLPGIEVPDTLAALGALATGWRAQRDLPLIAVTGSN 123

Query: 118 GKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTT  +M+   L + K   A    G++NN +GVPLTL R+    +  + ELGM+H GEI
Sbjct: 124 GKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGEI 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  + RP +A++      HL     +E +A     +   L   GT      D+F  L 
Sbjct: 184 ANLADIARPTVALVNNAQREHLEFMHTVEAVAHENGSVLSALPADGTAVFPAADAFTPLW 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +   G +   +FG++   + +    +       + +     + +      G H   N
Sbjct: 244 RELA---GTRHCLTFGEAAG-EVRCAAAQWGDGAWQVRIDTPNGAFDTRLAIAGRHNVTN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L            + +  + L+ F P  GR +           T++D+SYNANP S+ A
Sbjct: 300 ALAATACALAAGGPLASIARGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHA 359

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+ +     G R+ VLGDM E+G+    FH +      +  I  ++  G       
Sbjct: 360 AIEVLAALP----GPRLLVLGDMGEVGDQGSQFHAEAGAHARVRGIEQLFALGDLSAHAV 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            A   +    + + M  L   +  +L     V+VK S      +++  L 
Sbjct: 416 QACGTAAR--HFKDMATLQAAVGQALPTVGSVLVKGSRFMKMEQVVQALQ 463


>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 478

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           ++  +    I         +  V   G++IDSR++ P   F A++G   DGH ++  A +
Sbjct: 8   FSAREAAAIIGAAVFSPSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAAR 67

Query: 63  KGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IAI 113
            GA  V+V+ +  A +              V  V+D L AL +L+     R    + IA+
Sbjct: 68  AGASAVLVDHEKSACVEGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAV 127

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L   LS    T    G+ N+ IG+PL L  +     FG+FELG++ +G
Sbjct: 128 TGSSGKTTTKELLGSVLSMKAPTVVNPGNLNSEIGLPLALFGVGPADHFGVFELGINRIG 187

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  L+ L  P   +IT I  AH     G E +   K ++   ++  G +F   DD   +
Sbjct: 188 EMELLSSLYHPQHLLITNIGTAHSGPLGGKEGVFREKTKVLAHMQGEGFVFYPEDDDRID 247

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK++  +L  +    +G +      L   +   +       L+ + + + +  +G H  
Sbjct: 248 ALKSRYPSLAFRP---YGPA-----TLTGLETVEDLGTEGWLLRYRGVSIHYPLLGQHNL 299

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN    + +   L    +    ALS   P  GR +  R     G  +++D+ YNAN  S 
Sbjct: 300 QNGCGVIALAFELGVSPELIGAALSAAAPVAGRCRLLR-----GAISVLDDCYNANLDSS 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
           +     ++ +    +GR++ V G M E+G  S   H    + ++   +  V+L G     
Sbjct: 355 ERVFEYIASLP--WDGRKVIVFGSMKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSE 412

Query: 411 -VLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               + D    S  +H+SE   D L   + + + +GD+V++K S + G  RLI LL  E
Sbjct: 413 SFREISDQGSMSQILHFSENQFDELSERLLAFVREGDLVLLKGSRTMGLERLIPLLQHE 471


>gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
 gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
          Length = 452

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M0579]
          Length = 463

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LAAGAAAVVVSREDCAALKDA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRHRFGNEAVLATTGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 245 TATLNLNTR---TFGVDSG-DVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 301 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
 gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
          Length = 474

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 208/473 (43%), Gaps = 21/473 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++     G  +   PQ  V+ G+ IDSR       F A+ G H DGH ++  A + 
Sbjct: 4   MTADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRVAHEN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKT 120
           GA   +V   +  +     + V      LG L +  +A R         ++ ITGSVGKT
Sbjct: 64  GATTSLVTRLVPDAGDGAQVLVDDAQRALGDLARHVLARRREVADEPPVVVGITGSVGKT 123

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK++L   L+ +   +A  GS NN +G+PLT+ R P D    + E+G    G + +LT 
Sbjct: 124 STKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDARVVVAEMGADAPGNLTYLTS 183

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +AV+ T+  AHL+ F  ++ +A+ K+E+  GL   G   LN DD     +   + 
Sbjct: 184 IAPPDVAVVLTVGRAHLAGFGSVDAVAATKSELVSGLAPGGFAVLNADDERVAAMARLA- 242

Query: 241 ALGIKTIYSFGKSKNAD---FQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQN 295
                 + +FG            R     +    +++     G+ + V    +G H   N
Sbjct: 243 ----PRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTPDGEEVPVTLALVGEHHVTN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   L         AL+    +     R          T++D++YNANP S++A
Sbjct: 299 ALAAAAVGLGLGIAAADVAGALANAGARSPH--RMHVVERPDGVTVVDDAYNANPESVRA 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  L  I+   E R +AVLG+M E+G+ S+  H  +  V    N+  + + G    A+ 
Sbjct: 357 ALKALVAIAGR-ERRSVAVLGEMLELGDSSRDEHDAVGRVAVRLNVDKLVVVGEGARAMH 415

Query: 416 DALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                         ++  +D    ++ + L  GDVV+VKSS   G   L + L
Sbjct: 416 TGASHEGSWGDEALFAPDLDAARAYLATELRPGDVVLVKSSKGAGLAALADEL 468


>gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M01-240013]
          Length = 479

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 28  MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 84

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGSVGKT
Sbjct: 85  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 140

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 141 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 200

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 201 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 260

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 261 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 317 AAAAALSLAAGLSLNDVAEGLQGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 373

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 374 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 429

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 430 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 479


>gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
 gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 207/449 (46%), Gaps = 42/449 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR+      F A+KG +++G+ F   A++ G+   +V+       G        
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAGDTH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R R    II ITG+ GKTTTKE+++  LS         G+ NN I
Sbjct: 72  VDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +   HL  F   E + 
Sbjct: 132 GVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------N 255
             K E+++ L + G  TIF++ D+ +   L     A G+  I S+G+            N
Sbjct: 192 RTKGELYDYLRQKGDSTIFIHQDNPYLTKL-----AWGLNPI-SYGEQDGLYVNGHVTGN 245

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + + + +WK   E S  EV             IG +   N L  + I      + +   +
Sbjct: 246 SPYLIFEWKSGKEGSLHEVHT---------RLIGEYNLSNALAAVTIGCFFGVEPEKIDQ 296

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+ + P+  R +  + A N    TLI ++YNANP SM A+IS    +     G+++ +L
Sbjct: 297 ALNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLIL 349

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G+ S   H  + + L   +   V L G    A +   P             L  
Sbjct: 350 GDMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPT------YPDAPALIT 403

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +Q +   G  +++K SN      +++ L
Sbjct: 404 ELQKNKPCGKTILIKGSNGIKLNTVVDYL 432


>gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
 gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
          Length = 444

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 216/467 (46%), Gaps = 31/467 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   WT  ++   + G+  G         +S D+R++   + F A++G H+ G DF+  A
Sbjct: 1   MIAAWTAKEIATIVGGYLRGND-DWRALEVSTDTRTLTAGQLFIALRGEHFCGEDFLQTA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  V+V          + IP   V+D L AL  LA A R +S A II +TG+ GKT
Sbjct: 60  QERGAVAVIVQ-----EYREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS+  KT A +G+ NN IGVPLTL R+  +  F + E+G +H  +I  L  
Sbjct: 115 STKEMLYRILSAQGKTLATVGNLNNDIGVPLTLLRLQNEHRFAVIEMGANHPRDIERLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +AVIT ++ AHL  F  ++ +A+AK+EI+     +G + +N D         +  
Sbjct: 175 IVCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRF--SSGALVVNADLPQAAAWLQE-- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G ++I +F   ++A +               +    +  E+     G H   N L   
Sbjct: 231 -FGHRSIQTFALEQSAQWTAADI--SDNGQRFTLMHLAQRAEIAWQLCGRHNVANALAAT 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              S     +  + +AL     ++ R        +    TL D++YNANPAS KAAI V+
Sbjct: 288 AAASFAGVSLAQSAQALQGLRLQQSRLVALHVRHH----TLYDDTYNANPASFKAAIEVI 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +       + + G M E+G  S + H ++A       I H W      L++ D    
Sbjct: 344 KTAA-----HSLVIAGKMGELGAQSAALHAEVAAFAREKGIKHFW-----ALSVPDYAAG 393

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLL 464
                  E ++ +   ++  L  G+    V+VK S S    R+I  L
Sbjct: 394 FPDARLFEDVEAVNQALRDIL-AGEKPYTVLVKGSRSARMERVIAAL 439


>gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 208/472 (44%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+      AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I+VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 INVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 207/487 (42%), Gaps = 54/487 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVP---------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           + T   +   + G  I   P            +    IDSR  +    F A++G   DGH
Sbjct: 1   MLTLQTV---VDGVKIASEPRLQLPAALANLPIRSACIDSREASVDGLFVALQGERVDGH 57

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIP-----------------------VFGVDDV 91
           DFI  A  +G    +V    +A    L +                        +  VD  
Sbjct: 58  DFIAAAAARGVRAALVQRGRLADPSQLGLDRPFVLLDPDQGQIANEAPANAFFLISVDQT 117

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A+++LA   R +    ++ ITGSVGKT+TKE+L   L+   +T+    SYN+   +PL
Sbjct: 118 LTAMHRLATRYRQQQDLVVVGITGSVGKTSTKEVLAAMLAPTMRTHKSPRSYNSENTLPL 177

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +  +  +    + E+G+ + G++  LT + +P I ++T +  +HL     IE +A AK+
Sbjct: 178 VVLGIEPEHQIAVLEMGIYNKGDLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKS 237

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQS 270
           E+ + L   G   LNYDD     ++  + A     ++++G    AD      +    +  
Sbjct: 238 ELVQALPADGWAILNYDDQRVRAMQQVTKA----QVFTYGLDPEADLWADNIESRGLDGI 293

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +   +G+   +    IG H     L    +  +L    D+ I+ L           R 
Sbjct: 294 GFDAHYRGEQWHIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLRSSAQL-----RL 348

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                 G  TLID++YNA+P S  AA+++L+++     GRRIAV GDM E+G   +S H 
Sbjct: 349 LSYPAVGGATLIDDTYNASPVSCIAALNLLAELQ----GRRIAVFGDMAELGPHDESGHR 404

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDV 446
            +    +   +  +++ G     + +        +  VH       L   +QS+L   D 
Sbjct: 405 LVGVRAADV-VDQLYVVGEKARWIGEEAIEVGLPAEQVHVLPDKAALIAALQSTLQANDY 463

Query: 447 VVVKSSN 453
           V+VK S 
Sbjct: 464 VLVKGSR 470


>gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 423

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 201/436 (46%), Gaps = 29/436 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ D+R       FF ++G  ++G++F+  A++KGA  VV N    + +         
Sbjct: 12  KGVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQA----IL 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L +LA+  R      IIA+TGS GKTTTKE++   L+   +T    G++NNH+
Sbjct: 68  VEDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNFNNHL 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  I E+G +H GEI  L  +  P    IT    AHL  F   E + 
Sbjct: 128 GVPLTLLRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYITNFGRAHLEGFGSFEGVI 187

Query: 208 SAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264
            AK+E++  L+K    IF   D+     L       G    YSF    +K A+ QL  +K
Sbjct: 188 QAKSELYNYLKKDNKRIFFCQDNEIQVRLLN-----GYSNTYSFSMEGNKKANLQLSLYK 242

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +      + V+L  +   +  H IG + A N+   + I +      +  I  +  + P  
Sbjct: 243 ES-----LLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKEAIIHGIEGYIPTN 297

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +    A       ++ ++YNANP+SM AAI    +I       +I +LGDM E+G+ 
Sbjct: 298 NRSQFVEKAH---GNKILMDAYNANPSSMHAAIEAFKEIPSAN---KILILGDMKELGDY 351

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S + H  L   ++LY    V L G +            +     T++ +  ++       
Sbjct: 352 SPAEHQQLVNDIALYPWEAVLLVGENF------WNTQTNFLKFHTLEEVNAYLAQQHFVN 405

Query: 445 DVVVVKSSNSCGFYRL 460
              +VK S S    R+
Sbjct: 406 TFFLVKGSRSMTMERI 421


>gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
 gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
          Length = 467

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 208/474 (43%), Gaps = 30/474 (6%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W+   L QA QG+ +    P G +  I  DSR     +AF A+KG  +D HDFI     +
Sbjct: 14  WSIEQLQQATQGYWLNDKKPAGQIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V+  +        I    V+D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCEIAIVSRPV-----DADICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + +V
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPVMLLELRPEHQYAVMELGASHQGEIDYTSKMV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI+  + +T    +   D F E+++A   A+
Sbjct: 189 QPHVAGIINIGTAHLGEFGGRDGICRAKSEIYAHISETS--IIPAADDFAEVIRA---AV 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   SFG     +         ++ S   +     S  V     G H  +N       
Sbjct: 244 RTEKSLSFG--AGGEVYASDVVLEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAF 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L      +GR            +  ID++YNANP SM+AA  VL+Q
Sbjct: 302 ALAIGIGLDDIVAGLEQAVGAKGRLNFI----PHKDYLFIDDTYNANPGSMRAAAEVLAQ 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPR- 420
                +G R+ V GD+ E+G  +   H  L  +++S+  I+ V   G    A ++     
Sbjct: 358 ----QQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVAVGEFAPAAQEGARST 413

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                +      +    F+   +          + K S       L+  L+E+ 
Sbjct: 414 QYGKKMQAFLNQEQALPFLIRLIETHQPQPMSFLFKGSRFTHMETLMAALMEKL 467


>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
 gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
          Length = 450

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/463 (29%), Positives = 215/463 (46%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T     + + G  I   P    N    DSR +   + F+A+KG  +DG+ F+ +AV  GA
Sbjct: 6   TLGSFAKIVDGRIIQGNPLMPFNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNAVDAGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V +      I   +  +  V++ L AL  LA   R RS   ++AITGS GK+TTK+M
Sbjct: 66  SALVADKFFADKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKSTTKQM 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L     +     A +G+ NN  G+P +L  +     FG+FELG S  G+I  +     P 
Sbjct: 126 LLSICKTSGPARANMGNLNNQFGLPFSLLEIDSKDKFGVFELGASKKGDILEIGKPTLPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT ++ AHL  F  ++ +   K E+ + L   G +  N DD+  + LK +     I 
Sbjct: 186 VAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFGGILVFNSDDAMLKKLKTEYKGKAI- 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG    AD Q++  K       +E   +G+           H   N          
Sbjct: 245 ---SFGFKSGADLQIKNKKN------LEFVYKGEVFSFDLQFE-KHNKLNAAAAAAGAIA 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    D   K L+ +     R +  +     G    I + YNANPASMK AI++L++   
Sbjct: 295 LGLYKDNIEKGLAAYEAMPMRMEERKI----GNVDFILDCYNANPASMKNAITLLAKRKA 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
              G R+AVLGDM E+G  S  +H  LA++L    I +++LSG  + A  +AL     + 
Sbjct: 351 ---GPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFLSGPEMAAAAEALKTKNPAA 407

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + YS         ++  L +G   ++K+S S  + ++++ L 
Sbjct: 408 KLKYSLEYKDWAQDLKEVLKNGGTCLIKASRSMNYEKILDCLK 450


>gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha275]
 gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 452

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
 gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
          Length = 500

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 135/495 (27%), Positives = 206/495 (41%), Gaps = 41/495 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++   + G  +G  P   V G +  DSR + P   F A+ G   DGHDF+  A+  G
Sbjct: 5   TLGEIAGIVGGRLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVARALDAG 64

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDV----------------LGALNKLAVAARLR-- 105
           A   +V  ++    G  + +P     +                 L AL  LA A+  R  
Sbjct: 65  AAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAVLTALGALARASVDRLV 124

Query: 106 --SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++ +TGS GKT+TK+++   LS+     A  GS+NN IG P T  R   D DF 
Sbjct: 125 ADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALRADEDTDFL 184

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KT 220
           + EL     G IR L  L  P I V+  +  AHL  F   E IA+ K E+ E L      
Sbjct: 185 VLELSARAPGNIRELAALAPPRIGVVLNVGTAHLGEFGSREVIAATKGELVEALPDAAHG 244

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
           G   LN DD     +  ++ A     + + G   +AD +    +   E ++   +     
Sbjct: 245 GVAVLNADDDRVAAMAGRTSA----EVVTVGLGGSADVRAEGVRLDDEVRASFTLVTPRG 300

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             EV     G H   N L    +      DV+    AL          +R    +     
Sbjct: 301 EAEVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAEAASE--RRMDVRVTADGI 358

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEVL 396
           T+I++SYNANP SM+AA+  L+ ++  G G   R  AVLG+M E+GE +   H  +   L
Sbjct: 359 TVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAELGEDAVIEHDLIGRFL 418

Query: 397 SLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              ++S + + G                       +  T +     + S L  GD+V+VK
Sbjct: 419 VRLDVSQLVVVGLGRPQRAMFQGAIQEGSWGSEAEHVATAEEAVEILDSRLEPGDIVLVK 478

Query: 451 SSNSCGFYRLINLLL 465
           +S + G + +   +L
Sbjct: 479 ASAAVGLWSVAEHVL 493


>gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 432

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 207/449 (46%), Gaps = 42/449 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR+      F A+KG +++G+ F   A++ G+   +V+       G        
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIVDEAAYVPAGDTH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R R    II ITG+ GKTTTKE+++  LS         G+ NN I
Sbjct: 72  VDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +   HL  F   E + 
Sbjct: 132 GVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------N 255
             K E+++ L + G  TIF++ D+ +   L     A G+  I S+G+            N
Sbjct: 192 RTKGELYDYLRQKGDSTIFIHQDNPYLTKL-----AWGLNPI-SYGEQDGLYVNGHVTGN 245

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + + + +WK   E S  EV             IG +   N L  + I      + +   +
Sbjct: 246 SPYLIFEWKSGKEGSLHEVHT---------RLIGEYNLSNALAAVTIGCFFGVEPEKIDQ 296

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+ + P+  R +  + A N    TLI ++YNANP SM A+IS    +     G+++ +L
Sbjct: 297 ALNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLIL 349

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G+ S   H  + + L   +   V L G    A +   P             L  
Sbjct: 350 GDMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPT------YPDAPALIA 403

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +Q +   G  +++K SN      +++ L
Sbjct: 404 ELQKNKPCGKTILIKGSNGIKLNTVVDYL 432


>gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 475

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 190/462 (41%), Gaps = 20/462 (4%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A  G  +       V G ++DSR +     FFA+ G   DGH F+  A+  GA  
Sbjct: 6   AEVAEATGGRLVAGDGGVTVAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARG 65

Query: 68  VVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
            V+   +   +     P   V  V D   AL  LA   R R     ++ ITGSVGKTTTK
Sbjct: 66  AVIARPLAEVLPGGPPPGTAVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L          G+YN  IG+PL L  +       + E+ M  LGEI  L  +  
Sbjct: 126 EMTAAVLEQRFAVLKTAGNYNTDIGLPLILLDLEDHHQVAVLEMAMRGLGEIARLASIAE 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T +A +HL     +E+IA AK E+ E L   G   LN  D     + A++ A  
Sbjct: 186 PDIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRVRAMAARTRARV 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
                +FG    AD +    +     +   +++ G     V     G       L    +
Sbjct: 246 ----LTFGVEGGADVRAVAVESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D D     L    P   R +  +     G +TL  + YNA+P S  AA+  L Q
Sbjct: 302 GVVLGLDADAIAAGLGRARPASLRSEIRQ----AGSWTLFIDCYNASPTSTAAALQALRQ 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           ++   + R +A+LGDM E+G+ ++  H    +  +  ++  +   G    AL +   +  
Sbjct: 358 VAG--DRRAVAILGDMFELGDWAEEGHRRTGQ-AAARSVDVLLAVGRWAPALVEGWRQAG 414

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +           L   +   L  GD +++K S       +
Sbjct: 415 GAAGAAAAYPDKAALLADLDRWLHPGDAILIKGSRGMAMEEV 456


>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
 gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
          Length = 444

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 203/449 (45%), Gaps = 37/449 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R+I P   +FA+KG  ++G+ F   A+ KGA   V++                V
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT----LLV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L +LA   R + K  +I ITGS GKTTTKE++   LS      A  G+ NN+IG
Sbjct: 70  DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H GEI FL  +  P    IT+I  AHL  F   E +  
Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189

Query: 209 AKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----- 262
            K E+++ L+    TI  N D+   E L           +YSFG  +  +  ++      
Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLE-----NYNNVYSFGVGEGVNVSVQCLSTQP 244

Query: 263 WKQCSEQSWMEVQLQGKSMEV----------VHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            K     S ++   +G    +            H +G +   N+  ++            
Sbjct: 245 VKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKLSTKA 304

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             K +  + P+  R +  +     G  T++ ++YNANP+SM AAI  L  ++      ++
Sbjct: 305 IQKGIESYIPQNNRSQLLQW----GSNTVLLDAYNANPSSMTAAIDNLLSMNSFPN--KV 358

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +LGDM E+G+ +   H  + + L+ +  + V+L G +    K   P+       ET + 
Sbjct: 359 LILGDMFELGDYATQEHQSIVDKLTEHQWAGVYLIGKNFKQTKAPYPQ------YETFEE 412

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                ++      ++++K S      RLI
Sbjct: 413 FREVFKNLSFQDSLILIKGSRGMALERLI 441


>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
 gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
          Length = 489

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 153/498 (30%), Positives = 217/498 (43%), Gaps = 42/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+ G  +   VP      IS   DSR I P   F AI G   DGHDF+
Sbjct: 1   MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIA 112
                +GA   +V+      I    +P   V++ + AL  LA     R +A     T+I 
Sbjct: 60  PKVGAQGAVAALVD----HEIAGAQVPQIVVENTVKALGALAKHNIERRRALESPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK++L   LS +  T A +GS+NN IG+PLT  ++     F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVVEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHG 287
             + A + A     +  FG  +  D QL            +     ++ +      V  G
Sbjct: 236 AAMSAIAPA----DVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLG 291

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDES 345
           I G H   N L    +   L   +D     LS                  +  FTLID+S
Sbjct: 292 ICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDS 351

Query: 346 YNANPASMKAAISVLS--QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +NANP SMKA +  LS        +  RIAVLG M E+G      H D+           
Sbjct: 352 FNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDVGRYAVEGGADA 411

Query: 404 VWLSG----FHVLALKDALPRSIH-----------VHYSETMDGLFLFIQSSLVDGDVVV 448
           +   G      + AL +A+ +               H +E  D +   + +   +G VV+
Sbjct: 412 LVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMVTRLATD-HEGTVVL 470

Query: 449 VKSSNSCGFYRLINLLLE 466
           +K S++ G   L     +
Sbjct: 471 LKGSHASGLSALAERWTQ 488


>gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis 8013]
          Length = 452

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SM+AA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
 gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
          Length = 463

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 245 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SM+AA
Sbjct: 301 AAAAALSLAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMRAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
 gi|27887168|gb|EAA24272.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
          Length = 611

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/467 (26%), Positives = 219/467 (46%), Gaps = 42/467 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           L  F ++L+  +G    ++ + F     +  + +DSR +     FFAI     +G+ ++ 
Sbjct: 177 LKDFSEILK--RGKLNELIFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVK 230

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             + KG  LV+ +   +         V  V D +  +  LA   R +    ++ ITGS G
Sbjct: 231 DVLDKGTSLVIADNTDIKDKR-----VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNG 285

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++   LS   KT    G+YNNHIG+P TL  +  +  F + E+GMS LGEIR L
Sbjct: 286 KTTTKDIVYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRL 345

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P+ A+IT I  +H+      + +  AK E+ E ++K  T F+  DD +   L   
Sbjct: 346 GEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKENT-FVCGDDEYLGKL--- 401

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   +   G ++N  +++  ++  ++ S     L GK  E+    +G H   N  +
Sbjct: 402 -------DVNKVGFNENNTYKIESYEFSNKGSKFI--LDGKEYEMSL--LGKHNISNTAI 450

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   +    +   K L        R +  +     G    I+++YNA+P SMKAAI 
Sbjct: 451 AIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI----GNDIYINDAYNASPMSMKAAID 506

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L++I  + +  +IA+LGDM E+GE    +H+D+   L    I  ++L G  +    D  
Sbjct: 507 TLNEI--YNDKYKIAILGDMLELGENEVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIF 564

Query: 419 PRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            ++        Y  T +G+   +++  +D  V+++K+S       +I
Sbjct: 565 MKNKSEEYRFWYYPTKEGIVESLKNIKMDK-VILLKASRGIKLEEII 610


>gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis 961-5945]
          Length = 452

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMEMEEVVEALEDK 452


>gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240355]
          Length = 436

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 198/450 (44%), Gaps = 22/450 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR     + FFA+ G  +D HDF+   +  GA  VVV+ +   ++    
Sbjct: 4   ESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                VDD L AL  LA A R      +  ITGS GKTT KEML   L          A 
Sbjct: 63  ---LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++  +  AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNVLRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +   +FG     D 
Sbjct: 180 GFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTR---TFGVDSG-DV 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                         ++    +   VV    G H   N      +       ++   + L 
Sbjct: 236 HAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQ 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMKAAI VL+++       RI V+GDM
Sbjct: 296 GFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAP----RIFVMGDM 348

Query: 379 CEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE  + + H ++        I   +  G + +   +         +    D L   +
Sbjct: 349 GELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQVL 406

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  L +   V+VK S       ++  L ++
Sbjct: 407 RHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 465

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 16/467 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +          P     G SIDSR++A  + FFA+KG  +DGHDF+  A+ +GA
Sbjct: 4   TLEQIARWCSAELRSSQPARPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRGA 63

Query: 66  GLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              VV+    A +  L     +  VDD L AL +LA A R      ++ +TGS GKTTTK
Sbjct: 64  VGAVVSRARAAELLPLIDHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E +   L +  +     G+ NN+ G+PL L R+  + +  + E+GM+H GEI  L  +  
Sbjct: 124 EAIAAVLGAGYRVLKSQGNLNNNFGLPLQLLRLDTEDEIAVIEMGMNHAGEITALARIAM 183

Query: 184 PHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P   V+T +  AH+     GI  +A AK E+ + L   G  FLN DD++        H  
Sbjct: 184 PDWGVVTNVGKAHVENFTDGIAGVARAKYELVQALPAEGIAFLNCDDAYVSQFGRDFHG- 242

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +  FG+   A  ++ + +   +E + + V  +G+   +  H +G H   N L  L 
Sbjct: 243 ---RVILFGRGPCAHLRVEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAALA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +       ++   +AL      E RG+           +++++ YN+NP ++KA I+ L 
Sbjct: 300 VGLAAEIPLEIGARALESLRADEKRGQIIPWR----GASIVNDCYNSNPEALKAMIATLM 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPR 420
            +  +   R I V G+M E+G  + + H    E  +   +  V    G     +  A   
Sbjct: 356 GMPGN---RHILVAGEMLELGAEAPALHAACGEAAAAAKVDIVVGVRGAASQIVDAARRA 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                Y ET +   ++++++L +GD V++K+S      R +++L  E
Sbjct: 413 GADAVYVETPEDAGIWLKANLREGDAVLLKASRGVRLERALDVLQAE 459


>gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
 gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
          Length = 491

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 137/481 (28%), Positives = 216/481 (44%), Gaps = 31/481 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++ +   G  +   P    + +  DSR       + A  G   DGHDFI  A ++G
Sbjct: 4   FTAAEIAEITDGR-LAADPTITPSAVVTDSREATEGSLYVAKPGESADGHDFIGAAFERG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---------AARLRSKATIIAITG 115
           A L +V  +     G+   P   V D + A+  LA           A   ++ T+I ITG
Sbjct: 63  AVLALVEREGPDGAGAPY-PAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFTVIGITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++L   LS+   T +  GSYN  +GVPLT+ +   D  + + E+G + +G I
Sbjct: 122 SAGKTTTKDLLAGILSAEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGATGIGHI 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R+L  +VRP I V+  I  AH   F G++ IA AK E+ E L  +GT  +N DD     +
Sbjct: 182 RYLADMVRPSIGVVLGIGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDDGRVAAM 241

Query: 236 KAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQS-WMEVQLQGKS--MEVVHHG 287
            +++ A     +  F      D      +    +     +   E+   G++   +V    
Sbjct: 242 TSRTTA----NVLGFSAQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRSRL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H   N+L   G         +    A S+         R          T+I+++YN
Sbjct: 298 IGAHHVTNLLAAAGAAYAAGVTGERI--AASLSTQTAASRWRMERTERPDGVTIINDAYN 355

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM+AA+  L+ +      R  AVLG M E+G+ S   H+ +   +   NIS + + 
Sbjct: 356 ANPESMRAALRTLADL--GRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNISRLVVV 413

Query: 408 GFHVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           G    +L     +         ++E+ D  +  +Q  L  GD+V+ KSSNS G   L + 
Sbjct: 414 GREARSLYVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVLFKSSNSVGLRHLGDR 473

Query: 464 L 464
           +
Sbjct: 474 I 474


>gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
 gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
          Length = 461

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 127/438 (28%), Positives = 199/438 (45%), Gaps = 24/438 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG +++G+ F   A+QKG    VV+    A      I    V
Sbjct: 46  QVTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQKDDPRI--LLV 103

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L AL +LA   R +    II ITG+ GKTTTKE++   L          G+ NNHIG
Sbjct: 104 EDCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNNHIG 163

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + +  + E+G SH GEI  LTH+V P   +IT +  AHL  F   E +  
Sbjct: 164 VPLTLLRLKPEHEIAVVEMGASHPGEIHMLTHIVEPDYGIITNVGKAHLEGFGSFEGVIR 223

Query: 209 AKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K E+++ L   K  ++F+  ++ +   +    +         +G+++         K  
Sbjct: 224 TKGELYDYLRSRKNSSVFIQNENPYLNQIAEGLNC------IRYGQTEGLYVSGHVLKCS 277

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              ++  +  +G   EV  H IG +   N+L    I      + +    ALS + P+  R
Sbjct: 278 PFLAFAWIGEKGL-HEVQTHLIGTYNLDNVLAAAAIGRFFGVEEEEISLALSSYIPQNNR 336

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N     LI ++YNANP SM AA+     +       ++ +LGDM E+G  S+
Sbjct: 337 SQLEETPNNH----LIVDAYNANPTSMMAALENFRHVEAAH---KMVILGDMKELGSSSK 389

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + + L   N   V L G     ++ +  +         +D L   ++S    G  
Sbjct: 390 EEHAKIVDFLDTCNFEKVILVGPEFGCIQTSYEK------YPDVDTLIDHLKSDCPIGFY 443

Query: 447 VVVKSSNSCGFYRLINLL 464
           ++VK SNS    RL   L
Sbjct: 444 ILVKGSNSMKLSRLPEFL 461


>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 421

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 190/436 (43%), Gaps = 29/436 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ D+R       FF ++G ++DG+ F+  A++KGA  VV +     S          
Sbjct: 10  KGVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKA----IV 65

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L AL +LA   R +    IIA+TGS GKTTTKE++   L+         G+ NNH+
Sbjct: 66  VKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNLNNHL 125

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  I E+G +H GEI  L  +  P    IT    AHL  F   E + 
Sbjct: 126 GVPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYITNFGRAHLEGFGSFEGVI 185

Query: 208 SAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWK 264
            AK+E+++ L+K    IF + D+S    L       G +  YSF     + A+ QL   K
Sbjct: 186 RAKSELYQYLKKDNKCIFFSEDNSLQRELLE-----GYEPTYSFSLEGREGANLQLSLLK 240

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S   V L+    E     IG + A N+   + I        +   + +  + P  
Sbjct: 241 -----SIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAEAIRRGVEGYIPTN 295

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +            ++ ++YNANP+SM AAI     +       ++ +LGDM E+G  
Sbjct: 296 NRSQFVEKTR---GNRVLMDAYNANPSSMHAAIEAFQALPSAH---KVLILGDMKELGAY 349

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S+  H  L   ++ Y  + V L G +                  +      ++ +     
Sbjct: 350 SEREHQQLVTDIATYPWTAVLLIGENFG------RTQTDFLKFASPAEANSYLAAHPFSD 403

Query: 445 DVVVVKSSNSCGFYRL 460
            + +VK S S    ++
Sbjct: 404 TLFLVKGSRSMTLEKI 419


>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 489

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 153/498 (30%), Positives = 217/498 (43%), Gaps = 42/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+ G  +   VP      IS   DSR I P   F AI G   DGHDF+
Sbjct: 1   MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIA 112
                +GA   +V+      I    +P   V++ + AL  LA     R +A     T+I 
Sbjct: 60  PKVGAQGAVAALVD----HEIAGAQVPQIVVENTVKALGALAKHNIERRRALESPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK++L   LS +  T A +GS+NN IG+PLT  ++     F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHG 287
             + A + A     +  FG  +  D QL            +     ++ +      V  G
Sbjct: 236 AAMSAIAPA----DVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLG 291

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDES 345
           I G H   N L    +   L   +D     LS                  +  FTLID+S
Sbjct: 292 ICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDS 351

Query: 346 YNANPASMKAAISVLS--QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +NANP SMKA +  LS        +  RIAVLG M E+G      H D+           
Sbjct: 352 FNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDVGRYAVEGGADA 411

Query: 404 VWLSG----FHVLALKDALPRSIH-----------VHYSETMDGLFLFIQSSLVDGDVVV 448
           +   G      + AL +A+ +               H +E  D +   + +   +G VV+
Sbjct: 412 LVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMVTRLATD-HEGTVVL 470

Query: 449 VKSSNSCGFYRLINLLLE 466
           +K S++ G   L     +
Sbjct: 471 LKGSHASGLSALAERWTQ 488


>gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
 gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
          Length = 470

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 210/484 (43%), Gaps = 29/484 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++     G  +G  P   + G +  DSR  A    + A  G H DGHDF+  
Sbjct: 1   MIEL-SLEEIATVTGGRLVG--PDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPA 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
                  L V    ++            VDDV  A  ++A A   R     I+ ITGS G
Sbjct: 58  ------ALAVGAAGVLGERAVDGASCVVVDDVELAFAEVARAVVDRAPNLQIVGITGSSG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   L+    T A  GS N+ +GVPLT+ R+     + + E+G S +G I +L
Sbjct: 112 KTSTKDLLGAVLARFAPTIAPYGSLNSEVGVPLTVCRIDEATRYLVAEMGASGVGHIAYL 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P I ++  +  AH+  F  +E IA  K E+ E L + G   LN DDS    + ++
Sbjct: 172 TKIAPPSIGIVLNVGQAHMGEFGSVEAIARTKGELVEALPQDGVAILNVDDSRVRAMASR 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +   G  ++AD++               +       +V    +G H   N L
Sbjct: 232 TQA----KVILVGLGEDADYRATDVSIDEAGRPRYHLTCPLGEADVRLALVGEHQVGNSL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +   + L   +   ++A++          R   +   G  TL++++YNANP SM+AA+
Sbjct: 288 SVIAAATSLGLALGDVVEAVAGAGAASRW--RMEVSEVGGGVTLVNDAYNANPDSMRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLA 413
             L+ +      R IA LG+M E+GE S   H  + ++ +   I  + +           
Sbjct: 346 RALAHMGTS--RRSIAALGEMRELGEASHDEHTAVGQLAAELGIDRLVVVGAGAQAIAQG 403

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE-----F 468
            + A   +  V   + +D     +   +  GDVV+ KSS   G   L + L+EE     F
Sbjct: 404 ARTAGMTADAVTTVDDIDAAHDVLVEQIAPGDVVLFKSSRDSGLRMLGDRLVEESGTPAF 463

Query: 469 PAIQ 472
           P  +
Sbjct: 464 PVTE 467


>gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
 gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
          Length = 434

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 188/440 (42%), Gaps = 26/440 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V  ++ DSR       F  I G   DGHD+I  AV+KGA +             + I
Sbjct: 20  ERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPDNLVVI 79

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V   + AL   A          ++AITGS GKT+TK+M+ + L    KT+   G++
Sbjct: 80  P---VKSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKTAGNF 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +G+PLT+ RMP D +  + E+GM+  G+I  L+ L +P +A +T I  +H     G 
Sbjct: 137 NSDVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSKLAKPDVAFVTNIGESHGEQVGGR 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA AK EI  GL+  G + ++ D+                  Y  G  + AD ++   
Sbjct: 197 TGIAKAKLEIKAGLKADGRLIVDADEPLLS-----------GQGYRVGYDETADGKIEVI 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +   + S    +  G   E     +G H  +N    +        D     + L      
Sbjct: 246 ETTFDASIF--KYNGDLYE--LKVLGAHQIRNAAYAIACGLAFGLDHAMIQRGLDRIKLT 301

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +        G   LI+++YNA+P SM AAI  +  +   G  +R+ VLGDM E+G 
Sbjct: 302 SMRME----KQMFGEAHLINDAYNASPTSMIAAIETIKSL--EGFSKRVLVLGDMYELGA 355

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
             Q  H  +        ++   L G     + D +  S ++V    T++     +     
Sbjct: 356 DEQMQHEQVGG-AVTSPVTDCILVGDKAKWIADGIQDSRVNVKMVPTVEEAKALLHHYQR 414

Query: 443 DGDVVVVKSSNSCGFYRLIN 462
              VV++K+S      RL+ 
Sbjct: 415 PDTVVLLKASRGLALERLVQ 434


>gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 471

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 123/476 (25%), Positives = 205/476 (43%), Gaps = 24/476 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +   + G   G   +   +  + DSR +   E F A+ G   DGH +I  A+Q 
Sbjct: 1   MLDSAKIAVLLNGRLYG-SEKAVFHRCTADSRQVKGGEMFIALAGEKTDGHKYIARALQS 59

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA +V+     +   G   +P    +  V+D L  L +LA        A +I +TGS GK
Sbjct: 60  GAAIVLAEEKRLRREGVPVLPEKSSIIAVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L +  + +   G+ N  IG+P+T+   P D +  + E+GM  LG+I+ L 
Sbjct: 120 TTTKDMVAAVLGTKFRVHKNAGNLNTEIGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLC 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P  AVIT I   HL      E IA AK EI E L + G   LN +D        K+
Sbjct: 180 EISCPCAAVITNIGATHLELLGSRENIARAKWEIVESLPEEGIAILNTEDKIS---MEKA 236

Query: 240 HALGIKTIYS--FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +   KT++    GK    D    +     +  +    + + +++ +     G H   + 
Sbjct: 237 ASYHGKTLFYGIEGKFGRPDLWAEEIIPSGDTGTTFRARYKKENVLIRLPLPGKHNVLDA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  LG   +   ++++  +AL           R           +I++ YNANPAS+KA+
Sbjct: 297 LAALGAGLLNGVNLESGSQALEGLQISA---MRLEILPGCHQSIIINDVYNANPASVKAS 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++VL +    G  + +AVLG+M E+G  SQS H ++    +   +  +   G     +  
Sbjct: 354 LAVLKE---RGGAKTVAVLGEMYELGAASQSGHREVGVEAAGLGVLELVTVGKLAEEIAA 410

Query: 417 ALPRSI----HVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLL 465
              ++      +H  E         +     L  G  V++K S      ++ N L 
Sbjct: 411 GALQNGFLPSRIHICEDCAEAVTATKKIIDLLGAGTWVLIKGSRGMHMEKISNELK 466


>gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
 gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
          Length = 437

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 124/441 (28%), Positives = 194/441 (43%), Gaps = 25/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+QKG    VV+    A           VD
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKADDGR--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  LS     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+   G +FLN  ++    + A+        I ++G+ + AD Q      C+ 
Sbjct: 194 KGELYDFLKAHDGLLFLNESNADLMEMAAQRE---FSRIITYGQDETADVQG-NVVSCAP 249

Query: 269 QSWME-----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                      Q    + EV  H IG +   NML  + I             AL  + P 
Sbjct: 250 FLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIPH 309

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM E+G 
Sbjct: 310 NNRSQLTETAHNR----LIVDAYNANPSSMAAAIENFRLMQVKD---KMAILGDMRELGA 362

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  + ++L    I +VWL G      + +  +         ++ +   I     +
Sbjct: 363 ASGEEHQKVVDLLKNTGIDNVWLVGEEFGKTRTSFRK------FHDVEEVKAEIARCRPE 416

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN    + L  LL
Sbjct: 417 NHYILIKGSNGIKLFELPALL 437


>gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 464

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 194/464 (41%), Gaps = 22/464 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +S D+RS+ P   + A++G  +DGHDF   A  +GA  ++
Sbjct: 9   IAHWAGGEIHGD--DVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARGASALL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       +  + +P   V D   AL K+A   +      + AITGS GKT+ K +L   
Sbjct: 67  VER-----LLPIELPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVKSLLLSI 121

Query: 130 LSSIKK-----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L  + +      YA  G+ NN IG+PL +   P D D+ ++E+G    G+I +LT + RP
Sbjct: 122 LQQVAQHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  IAPAHL     +  +A  K  I+  L   G   +N DD++    +        
Sbjct: 182 RYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQHFVGTPA 241

Query: 245 K-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +  +G    AD   R  +  ++ +   +        VV    G H   N L    + 
Sbjct: 242 RCRVLRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNALAAASLA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+      L+   P  GR   ++    +    L+D+SYNANP S+ AAI  L+  
Sbjct: 302 LAAGVDLALIAAGLAEAQPVPGRQIAHQL---RNGAVLVDDSYNANPGSLAAAIDALAAA 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G      VLGDM E+G  +++ H           +  ++  G    A   A      
Sbjct: 359 PEEG----WLVLGDMRELGPDAEALHAQAGIRARAAGLKRLYALGPLSAAAAAAFGEGGR 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +  T   L   +Q  L  G   +VK S       ++  LL +
Sbjct: 415 --HFATHGALSQALQDELHAGVRCLVKGSRGSAMDLIVKALLAQ 456


>gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 148/495 (29%), Positives = 213/495 (43%), Gaps = 39/495 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+QG  I                DSR I     F AI G   DGHD++
Sbjct: 1   MMPM-SLEEIAQAVQGRLIAGTAAIDTPVATSTFTDSRQIVEGSVFVAIAGERVDGHDYV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIA 112
                +GA   +V+      I    +P   V+D + AL  LA     R +A     T+I 
Sbjct: 60  SKVGAQGAVAAIVD----HEIDGAGVPQIVVEDTVLALGALAKHNIERRRALETPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+++   L+ I  T A +GS+NN IG+PLT  ++  +  F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLMKALLAHIGPTIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIRGLVPGGLSVLNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWK--QCSEQSWMEVQLQGKSMEVVHH 286
             + A +       +  FG  +N D       +     +    S++     G+  EV   
Sbjct: 236 AAMSAIAPG----DVMWFGLPQNNDGKPAISAQHVHCDELDHPSFILDNGDGEHAEVTLG 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDES 345
             G H   N L    +   L   +     ALS                 Q   FTLID+S
Sbjct: 292 ICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISPHRMAVSIVNKQETSFTLIDDS 351

Query: 346 YNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +NANP SMKA +  L +     E +  R+AVLG M E+G   +  H+ +        +  
Sbjct: 352 FNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHVGIGRYALEGGVDA 411

Query: 404 VWLSGFHVLALKDALPRSI-----------HVHYSETMDGLFLFIQSSL--VDGDVVVVK 450
           +   G    A  DAL  ++           HV +   +D     +        G VV++K
Sbjct: 412 LLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTRLAVEHPGAVVLLK 471

Query: 451 SSNSCGFYRLINLLL 465
            S++ G   L     
Sbjct: 472 GSHASGLSALAERWQ 486


>gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37]
          Length = 447

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 138/467 (29%), Positives = 209/467 (44%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLDEIAAVVSGTVEGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            + GA  V+ +          ++P   V+D   AL  LA    ARLR + T++ +TGS G
Sbjct: 60  GRAGAVAVLGSRP-------TTLPTVVVEDARAALQALAAHVVARLRDRLTVVGLTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LS    T A IGS NN +GVPLT+ R   D  F + E+G   +G I  L
Sbjct: 113 KTSTKDLLAAVLSHTGSTVATIGSLNNELGVPLTMLRTTPDTRFLVLEMGARGIGHIAEL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV   +AV+  +  AH+  F   E IA+AKAE+ +GL   GT  LN DD    +++A 
Sbjct: 173 TALVALDVAVVLNVGQAHIGEFGSREAIATAKAELLQGLVPGGTAILNADDPRVLVMRAL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +         +FG++++A  ++              ++    S  V    +G H A N  
Sbjct: 233 TDGPA----LTFGRAEHAHVRVLDLALDRLGRPAFTLRTADASAPVALPLVGAHQALNAS 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       +D     L+     +    R       G  +L+++SYNANP S +AA+
Sbjct: 289 AAAAAGLAAGIPLDVTAATLATASLSKW---RMELRGLSGGVSLLNDSYNANPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I     GRRIAVLG+M E+G+ S++ H  + E  +      V   G     + + 
Sbjct: 346 DALAAIEA---GRRIAVLGEMRELGDDSEAEHRAIGEYAARA-ADLVVAVGEAAAPIAEG 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        D    +++ +L  GDVV+VK+S       +   L
Sbjct: 402 A--GDRAVALADNDAAVDWLRRALTAGDVVLVKASRLARLDEVAAAL 446


>gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
 gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
          Length = 469

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 201/468 (42%), Gaps = 36/468 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +  Q H +          ++ DSR+      F A+KG  +DG+ F   A++KG
Sbjct: 30  MDIQEIYKIYQAHPV----------VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               +++    A  G        VDD L    +LA   R +    +I ITG+ GKTT+KE
Sbjct: 80  CSYAIIDEKEYAKAGDER--YILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKE 137

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  L+     +    +YNN +GVP TL  +  + +  + E+G SH G+I  L   V P
Sbjct: 138 LISAVLAEKFNVHHTEANYNNDVGVPRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEP 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALG 243
              +IT +  AHL  F   E +   K E+++ L+  G  +FLN  +     +  +     
Sbjct: 198 TCGLITNVGRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQ---RA 254

Query: 244 IKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
              I ++G+ + AD Q          K   + S +       +  EV  H IG +   NM
Sbjct: 255 FDRIITYGQDETADVQGYVVSCAPCLKFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNM 314

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + I             AL  + P   R +    A N+    LI ++YNANP+SM AA
Sbjct: 315 LAAIAIGLHFGVTPQQINYALENYVPHNNRSQLTETAHNK----LIVDAYNANPSSMAAA 370

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I     +       ++A+LGDM E+G+ S   H  + E+L   +I +VWL G      + 
Sbjct: 371 IENFQLMEVEN---KMAILGDMRELGDASAEEHQKVVELLKATDIRNVWLVGEEFGKTQ- 426

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        +D +   I     +   +++K SN    + L  LL
Sbjct: 427 -----TDFRKFRDIDEVKKEIALHRPEDHYILIKGSNGIKLFELPALL 469


>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1
 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2
          Length = 454

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 126/471 (26%), Positives = 197/471 (41%), Gaps = 30/471 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   LS+  KTY   G+YNN IG+P T+   P   +  + E G  HLG+I  L+ L RP
Sbjct: 117 XLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHXPEGTEKLVLEXGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G      +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGXASGSLLLAPADPIVEDYLPI------D 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N  +   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAXIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    A   F   E    R           ++ + YNANP + K  +   S I 
Sbjct: 287 QEGVSEEQIRLA---FQHLELTRNRTEWKKAANGADILSDVYNANPTAXKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IAVL D  E+G+ S   H      LS   +  V   G  +  L     +    
Sbjct: 344 ANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQLASQXFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSXNLAKLVESLEN 454


>gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 455

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 202/472 (42%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLN--LPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSHEDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLKEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL + G   +  +D    + +
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTLDIAKAKSEIYQGLGEDGLALIPCEDEHAAVFQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S     +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TTSQGHQQR---TFGVDSG-DVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAATALALAAGLSLNDVAEGLQGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L  +
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTNK 452


>gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 433

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 195/439 (44%), Gaps = 25/439 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA+KG  +D + F   A+  GA   V++                VD
Sbjct: 16  ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNGDYNVSQKC----ILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +     + +TGS GKTTTKE++   LS    TYA  G+ NNHIGV
Sbjct: 72  DVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  +   V+  + E+G +H  EI  L  + +P   +IT +  AHL  F G E +   
Sbjct: 132 PLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGGAEGVKKG 191

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+   G IF+N D      + A+     +  +  +G     +      +    
Sbjct: 192 KGELYDYLKTSKGVIFVNQDSKVLTDMVAE---RALTDVQYYGSDIGNNISGELLENSP- 247

Query: 269 QSWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +++++ + K+     V     G +   N+L  + I        D     LS + P   
Sbjct: 248 --YLKLRWKIKNEAYHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDEINTGLSGYQPHNN 305

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  + A N    TLI + YNANP+SM  AI  + ++     GR++ +LGDM E+GE S
Sbjct: 306 RSQIVKTASN----TLICDYYNANPSSMFVAIENIGKLPA---GRKVVILGDMFELGEES 358

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  + +      I      G       +     ++  +  +++      +S  V   
Sbjct: 359 AVEHESVIQKAMQTAIDERIFIGAEFYKQSEL----VNATFYRSVEDAIGAFKSRPVKNA 414

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      RL++L 
Sbjct: 415 TILIKGSRGMALERLVDLF 433


>gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 135/502 (26%), Positives = 205/502 (40%), Gaps = 48/502 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   +   + G    +  PQ  V G +  DSR I   + F A+ G   DGHDF  
Sbjct: 1   MIEL-TLAQIADIVGGTLHDVPDPQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVA- 101
            A++KGA  V+        + ++ +PV G  D                VL AL  LA   
Sbjct: 60  TAIEKGAVAVLGAR--PVGVPAIVVPVSGETDNRVMALESDTDGAGAAVLTALGDLAAYC 117

Query: 102 --ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             +      T++ +TGS GKT+TK+++   L  + +T A  GS+NN IG P T  R    
Sbjct: 118 TKSLAADGLTVVGVTGSAGKTSTKDLIAAVLRPLGETVAPPGSFNNEIGHPWTALRATAS 177

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+     G I  L  L  P I V   +  AHL  F   E IA AK E+ E L  
Sbjct: 178 TKFLVLEMSARGEGHIAALAKLAPPRIGVELNVGTAHLGEFGSREAIARAKGELVEALPV 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQG 278
            G   LN DD+    + +++ A     +  +G ++ A  +       +  ++   +   G
Sbjct: 238 DGVAVLNADDAAVAAMASRTAA----RVVFYGTAE-AQVRATDVVLDAHARAAFTLHTAG 292

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  V     G H   N L +  +     A      +ALS         +R       G 
Sbjct: 293 GTAPVALKVHGEHQVHNALASAAVGLECGATTAQVAEALSGAGAASP--RRMDVFTTDGG 350

Query: 339 FTLIDESYNANPASMKAAISVL----------SQISPHGEGRRIAVLGDMCEMGELSQSF 388
            T+++++YNANP +M+AA+  L           ++      R  AVLG+M E+GE S   
Sbjct: 351 VTVVNDTYNANPDAMRAALRSLVLMSEHDEAGERLPGRDRRRTFAVLGEMGELGEESILE 410

Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLV 442
           H  L   L   +I+     G    V AL                 +T       +++ L 
Sbjct: 411 HDRLGRFLVRLDITSTICVGSSRAVHALWQGAVMEGSWGSEAIRVDTRAEAVERLRAELR 470

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            GD+V+VK+S S   + +   L
Sbjct: 471 PGDLVLVKASKSEKMWEVAESL 492


>gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
          Length = 607

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 206/439 (46%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +         V 
Sbjct: 199 IKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTDIKDKR-----VI 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YNNH
Sbjct: 250 KVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +   L           +   G + N   +++ +   
Sbjct: 370 FKAKTELLEFVDKENT-FVCGDDEYLGKL----------DVNKIGFNGNNTHKIKSYDFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S     L GK  E+    +G H   N  + + +   +    +   K L        R
Sbjct: 419 NKGSKFI--LDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIKI----GNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENEV 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +H+D+   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 529 DYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIKM 588

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           D  V+++K+S       +I
Sbjct: 589 DK-VILLKASRGIKLEEII 606


>gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
 gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
          Length = 474

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 131/475 (27%), Positives = 208/475 (43%), Gaps = 33/475 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   +   +        P   + G+S D+R++ P   F A+KG  +DGHD +  A   GA
Sbjct: 5   SLQQVATWLN-QLSVQQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V+         + +P   V+D L AL  L    R +    +IAITGS GKTT K++
Sbjct: 64  AAAIVSHLN----PDIDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    +    T A +G+ NN IGVPLTL  +     F + E+G +HLGEI  LT L RP 
Sbjct: 120 LASICAQAGPTLATLGNLNNDIGVPLTLLSLSDIDQFAVIEMGANHLGEIARLTALARPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT    AH+  F  ++ I   K E+F GL       +N D    +   A   A    
Sbjct: 180 VGLITMAGTAHVGEFGSVDAIVQGKGELFVGLVPEAQAVINLDSYGADRWWAMGSAQRN- 238

Query: 246 TIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGI 302
                G + N D + R   +  +    + +   G+ +         G H A N+L  + +
Sbjct: 239 -----GFTLNNDPRARWTGEYNATTERLTIFENGQLLIESQPLPLPGAHNATNLLAAVAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +  +  L+ F P  G   R          T+I+++YNANP SM AA+  L  
Sbjct: 294 ARTAGFSKEIILAGLNSFTPPAG---RMSLVACSEQLTVINDTYNANPESMCAALDYL-- 348

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPR 420
                 G  +AVLGDM E+G+LS + H ++        I  ++  G  +      +A+  
Sbjct: 349 --VGRPGLHLAVLGDMGELGDLSAALHEEVIAYARGLAIDGLFTLGAAMDVAMKPNAVSS 406

Query: 421 SIHVHY-SETMDGLFLFIQSSL-------VDGD--VVVVKSSNSCGFYRLINLLL 465
           ++ + Y ++    L L +  +L         G    +++K S      R++N LL
Sbjct: 407 NVSIEYSAKDHADLALALVRALDQLASRSASGTPITILLKGSRFMRMERILNQLL 461


>gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 488

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 139/478 (29%), Positives = 207/478 (43%), Gaps = 28/478 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++    +G  +   P      +  DSR   P   + A  G H DGHDFI  A + G
Sbjct: 4   FTAAEIADITKGR-LDADPGITPTSVVTDSREATPGSLYVAKPGEHADGHDFIAAAFESG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---------SKATIIAITG 115
           A L +V        GS   P   V+D + A+  LA  A  R          + T++ ITG
Sbjct: 63  AVLALVERPAARPDGSSY-PSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELTVVGITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++L    +S   T A  GSYN  +GVPLT+ +      + + E+G + +G I
Sbjct: 122 SAGKTTTKDLLAGLFASQGSTVAPKGSYNGEVGVPLTVFQADEGTRYLVIEMGATGIGHI 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R+L  +V+P I V+  +  AH   F G++ IA AK E+ EGL   GT  +N DD     +
Sbjct: 182 RYLADMVKPDIGVVLAVGTAHAGEFGGVDNIALAKGEMVEGLSADGTAIINLDDDRVAAM 241

Query: 236 KAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH--HGIGY 290
           ++++ A    T+  F       A  Q          +   ++QL G           IG 
Sbjct: 242 RSRTTA----TVLGFSAEGRGGAAVQALSADTNEHGNPEFDLQLPGSDGPQHVASKLIGA 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L                   LS          R          T+I+++YNANP
Sbjct: 298 HHTGNLLAAAAAAFAAGMSGADIAAGLS--KQSAASRWRMERTERADGVTVINDAYNANP 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM+AA+  L+ +      R  AVLG M E+G+ S   H  +   +   NIS + + G  
Sbjct: 356 ESMRAALRTLADL--GRGRRTWAVLGAMLELGDDSIREHTAVGTQVVRLNISRLVVVGRE 413

Query: 411 VLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             AL               ++E  D  +  + + L  GD+V+ KSSNS G   L + +
Sbjct: 414 ARALYVSAVQEGSWGDECLFAENPDEAYELLNAELEPGDLVLFKSSNSVGLRHLGDRI 471


>gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
 gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
          Length = 607

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 205/439 (46%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   +         V 
Sbjct: 199 IKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTDIKDKR-----VI 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YNNH
Sbjct: 250 KVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +   L           +   G + N   ++  +   
Sbjct: 370 FKAKTELLEFVDKENT-FVCGDDEYLGKL----------DVNKVGFNGNNTHKIESYDFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ S     L GK  E+    +G H   N  + + +   +    +   K L        R
Sbjct: 419 NKGSKFI--LDGKEYEMSL--LGKHNISNTSIAIELAKKIGLTDEEIQKGLKEIKISNMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIKI----GNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENEV 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +H+D+   L    I  ++L G  +    D   ++        Y  T +G+   +++  +
Sbjct: 529 DYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIKM 588

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           D  V+++K+S       +I
Sbjct: 589 DK-VILLKASRGIKLEEII 606


>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
          Length = 471

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 138/475 (29%), Positives = 212/475 (44%), Gaps = 27/475 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I      +     V G SIDSR++   E FFA+ G  +DGH+F+  A++ GA
Sbjct: 4   TLGQVADWIHAEGEFVSTDEVV-GYSIDSRTVGAGELFFAVMGERFDGHEFVKTALEAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDD----VLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              VV+   V S       +  V D    VL AL KLA   R      +I +TGS GKTT
Sbjct: 63  VAAVVSMRWVVSAEVDPCKLLRVPDGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKTT 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE +   L++  K     G+ NNH GVPL L R+  +    + E+GM+H GEI  L  +
Sbjct: 123 TKECVAAVLAAKFKVLKSAGNLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAKI 182

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             P  AV++ +A  HL  F  G+E IA AK E+ + L   G  FLN DD F         
Sbjct: 183 AEPDWAVVSNVAAVHLEFFADGMEGIARAKKELVDALPAAGVAFLNADDVFVSTFGEGHE 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS------MEVVHHGIGYHMA 293
           A        FG S+ AD +  + K    E     VQ+  +       M      +G H  
Sbjct: 243 ARM------FGLSETADVRGVEVKNVGLEGMQFVVQVTAREGRVADKMRARIALLGEHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +       +   + AL    P + RG+            LI++SYN+NP ++
Sbjct: 297 YNALAAIAVGLESGMTLGECVFALDSVVPSDKRGEMIEW----HGARLINDSYNSNPRAL 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +A +  L  I     GR I + G+M E+G+ +   H      ++   +  V        +
Sbjct: 353 EAMVDALMAI---EGGRHIVIAGEMLELGQDAGKLHAASGRQMAKRGVDVVVGVRGFAES 409

Query: 414 LKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L            + +T +    +++++L +GDVV++K+S      + +  L+E+
Sbjct: 410 LAGVAKMSGAEALFVKTPEEAGAWMKANLREGDVVLLKASRGVRLEKALASLVED 464


>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
 gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
          Length = 444

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/436 (25%), Positives = 207/436 (47%), Gaps = 23/436 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R I     FFA+KG  ++G+ F   A+ KGA +VVV+             +  V 
Sbjct: 31  VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEPQNLQDDR----IILVK 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L +L  LA A R   +  +I +TGS GKTT+KE++   L    + +   G+ NNHIGV
Sbjct: 87  NGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNNHIGV 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +P +    + E+G +HL EI  L+ + +P +  +T    AHL  F G E +   
Sbjct: 147 PLTLLSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNFGHAHLEGFGGFEGVVKG 206

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  L E   T+ +N DD           A  +++  SF K+++   Q     +  E
Sbjct: 207 KSELYNFLHEHHKTVLINADDPL-----QLQQAKAVESQISFSKNEST--QATYCIELKE 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               ++Q+  + + +  +  G +   N+   +                +  ++P   R +
Sbjct: 260 NVNNKIQVVVEDVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEIKNGIENYYPANHRSQ 319

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +    +  +TL+ ++YNANP+SM+A+++  S      +G +  +LGDM E+GE S+  
Sbjct: 320 LIQ----KDKYTLLMDAYNANPSSMEASLNNFSTF----DGSKTVILGDMFELGESSKVN 371

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +A++        ++L G +   ++        + + E  D L  +++   ++   ++
Sbjct: 372 HQKIAQLTKDLGFEKIYLVGNNFSKIEGDFS---DIQFFEDRDSLVNYLKKHPIETKNIL 428

Query: 449 VKSSNSCGFYRLINLL 464
           +K S+      L N L
Sbjct: 429 IKGSHGMRLDLLENEL 444


>gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
 gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
          Length = 470

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 195/473 (41%), Gaps = 19/473 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  +    I G ++          +S DSR+  P + F A+KG  +D HDF+      
Sbjct: 2   MFTLREAAAVIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAH 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
               V+       +  +  +P   V  D   AL  LA   R R    ++A+TGS GKTT 
Sbjct: 62  NVSAVLATR----TPDNFEVPALRVTGDTRTALGALANGWRQRFSLPLVAVTGSNGKTTV 117

Query: 123 KEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           KEM++   ++        A  G++NN +G+PLTL R+       + ELGM+H GE   L 
Sbjct: 118 KEMISSIFAAAVGEASRLATAGNFNNDVGLPLTLFRLNETHKLAVVELGMNHPGETALLG 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P +AV+      H    + +E +A   A +   L+  G      +D++  + +  +
Sbjct: 178 KIAEPTVAVVNNAQREHQEFMATVEAVALEHAAVIHALKPEGVAVFPANDAYAGIWRVAA 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I  F  +          K   E S + +      ++V    +G H A N L  
Sbjct: 238 TG---NRIIDFALNTAEHTTEAAVKGSLEGSELSIDTAEGHVDVTLQVLGAHNAHNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358
                     +D   + L  F   +GR +  R  L      T+ID++YNANP SM AAI 
Sbjct: 295 TAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNANPDSMLAAID 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+         R+ V+GDM E+G+    FH ++        I  ++  G        A 
Sbjct: 355 VLAARPSP----RVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALGEASRDACAAY 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 H+ + ++ L   ++ +        +VK S      R+++ +    PA
Sbjct: 411 --GDEAHHCDDVEALVAHLKQAAYGAAATYLVKGSRFMKMERVVDAVTSPQPA 461


>gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 462

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 214/474 (45%), Gaps = 27/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P +  H++   I    +G      +N ISI S  I  Q  F A+ G  YDGHDF+  A
Sbjct: 1   MVP-FRLHEIACFINAKCVG--SDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++VN  +     SL IP   V D   AL K+A   R +  + IIAITGS GKT
Sbjct: 58  VMAGAKALLVNRYV-----SLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L       A   +YNN IGV +TL ++   +DF + ELG + LGE++ L  
Sbjct: 113 SVKEMTASILKECGTVIATQKNYNNFIGVSITLLKLTYGIDFAVVELGSNKLGELKKLGE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKS 239
           +V   +A++  I  +HLS F  +  I   K +IF G+        +N D   +  ++  S
Sbjct: 173 IVGADVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINLDS--YSFVQGNS 230

Query: 240 HALGIKTIYSFGKSKNA---DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             L  K  +SF   K     +F               +     S  +    +G H   N+
Sbjct: 231 ILLNFKKKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFMPILGIHNISNI 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +   +  L   +   GR   +   LN+G   LID++YNAN  SM AA
Sbjct: 291 LAASALSFAVGASLSNIVHGLQKMNALPGRLFPF--ILNRGKLCLIDDTYNANIGSMIAA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           I+VLS +     G RI V+ DM E+G+L  ++ +H  +  ++   NI ++   G     +
Sbjct: 349 INVLSFMP----GYRILVVSDMLELGDLKMARYYHCYIGRLILGSNIDYIITIGDLSHFI 404

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
                +  H    +    L  +I   L    +  +++K +      ++++ + +
Sbjct: 405 LKIFKKGKH---FQRKTALIFYINKILSQNRLISILIKGARKFKMEQVVDAVRK 455


>gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 479

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 171/453 (37%), Positives = 235/453 (51%), Gaps = 14/453 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G+SID+R +AP + F A+     DGHDF+  A+  GAG  +V+            
Sbjct: 21  DWAVTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQALAAGAGAALVSRIPEGVAED--A 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V DV  AL  L  A R R++A +IAITGSVGKT+ KEM+  AL+S  + +A   S+
Sbjct: 78  PLLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAAERSF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP   +  + E+GM+H GEI  L  + RPH A+ITTIA AHL     +
Sbjct: 138 NNHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAALITTIAAAHLEALGSL 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA  KA IFEGLE  G   +  D     +L+A +   G + I SFG       +L   
Sbjct: 198 EAIAVEKASIFEGLEPDGLAVIPGDLPQTPILRAAAEDAGAR-IESFGTGAGNTHRLSDV 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +     +    QL G  M +     G H  +  L  L  V+ + AD   A+ AL  + P 
Sbjct: 257 QAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGADPARALMALGAWAPP 316

Query: 324 EGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISVLSQISPHG------EGRRIA 373
            GRG R R  L+         LID+++NANP SM AA+ +L+Q +P        +GRRIA
Sbjct: 317 SGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQAAPAHDIGRIAKGRRIA 376

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +LGDM E+G    + H  LA   ++  I+ V   G  + AL  ALP      + ET   L
Sbjct: 377 ILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAALPEDKRGRWVETAQAL 436

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + +  GDVV+VK S       +++ L +
Sbjct: 437 VPHAHALVDAGDVVLVKGSKGSRVSLVVDALRK 469


>gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 480

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 126/480 (26%), Positives = 221/480 (46%), Gaps = 22/480 (4%)

Query: 3   PLWTFHDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           PL     +L         ++    + F   +SIDSR +   + F A+     DGH F+  
Sbjct: 5   PLEVLATILCGTILGDQRTVAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSD 64

Query: 60  AVQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           A + GA   ++     A   SL +  P   V D + AL  LA + R      ++ ITGSV
Sbjct: 65  AAKAGAAFAIIERHFEAEFASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSV 124

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIR 176
           GKT+T+ ML   L +         ++NN +G+PL++  +     +F + E+G    G+I 
Sbjct: 125 GKTSTRSMLYEVLQARYSGRQSPANFNNTLGLPLSILELECTRDEFAVLEMGAGQRGDIA 184

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  + +P + VIT+I  AHL+ F     +A +KAE+FE L + G  F    D F  +LK
Sbjct: 185 RLCEIAQPEMGVITSIGLAHLATFGTPLSVAESKAELFESLPENGVAFFPGHDPFALVLK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K+H        + G+    D+ +++ +   +     +  Q    +     +  H  QN 
Sbjct: 245 DKAHC----RTVTVGEDTVNDWTIQQVRAVRDGYRFVMDGQ----DYFIRTVARHFVQNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            + + +   +          L+ + P  GR       +     T++D+ YNA+P++M AA
Sbjct: 297 GLAIAVGREVGISNAEIADQLAKWQPVSGRC----SLIPHPSLTILDDCYNASPSAMAAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L ++    E R IAVLGDM E+GE+S+  H  + ++    +I  +   G H   +  
Sbjct: 353 LRTLEELGEREETRTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFILAVGQHADLIAK 412

Query: 417 ALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           A   +      +  +  ++  ++ ++  + +GDV++VK S S G  R++  L    PA++
Sbjct: 413 AAKATNLSLHRLAVARDVEMAWMLLECWIEEGDVILVKGSRSMGLERIVENLRSFQPAVR 472


>gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 432

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 203/441 (46%), Gaps = 26/441 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G        
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEGDTR--YIV 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I 
Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191

Query: 208 SAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L   K  TIF++ D+ + + +    H +       +G S++  +       
Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIA------YG-SEDGLYINGHVTG 244

Query: 266 CSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            S     E +   +S   EV    IG +   N L  + I      + +   KAL+ + P+
Sbjct: 245 NSPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM A+IS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAEN---KMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +A+ L       V L G    A + +            +  L   +Q     
Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAATRHSYQS------YPDVTALIAELQREKPC 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      ++  L
Sbjct: 412 GKTILIKGSNGIKLSSVVEYL 432


>gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
 gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
          Length = 462

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 216/474 (45%), Gaps = 24/474 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +  ++   +   SIG+     +N IS +S  I  +  F A+ G  YDGHDFI  AV  
Sbjct: 3   LLSVSEISLILNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAVMA 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+VN  +     S+++P   V D   AL K+A   R R  + +IAITGS GKT+ K
Sbjct: 63  GAQAVLVNRYV-----SVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKTSVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M    L +     +  G+ NN IGVP+TL  +    DF + ELG + LGE+  L+ +V 
Sbjct: 118 NMTVSILKNCGTVVSTQGNQNNLIGVPITLLNLTYQSDFAVIELGSNQLGELNKLSKIVA 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A++  I  +HLS F  ++ I   K EIF GL   G + +N D +   +  +    L 
Sbjct: 178 ADVALVNNIFISHLSGFRSLKSIQQEKGEIFSGLACNGQVVINGDSNAVFMWNSM---LQ 234

Query: 244 IKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +K  + F     K  DF               +        V    +G H   N L    
Sbjct: 235 LKKRWWFSIYVKKEMDFFANNICIYPHGVRFILSSPYGVAPVFLSILGRHSVSNALAASA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   + A++   +  L    P  G  + Y   LN G   L+D++YN+N  SM  AI+VLS
Sbjct: 295 LAFSVGANLSEIVYGLQNIQPLPG--RLYPILLNDGKLLLLDDTYNSNVGSMIEAINVLS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            +     G RI V+ DM E+GE   +  +H  +A ++S   I  +   G     +     
Sbjct: 353 VMP----GYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILTIGNISYLISKNCK 408

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
              H H     + L  ++ ++ L       ++VK S S    R+++++ ++F  
Sbjct: 409 EGKHFH---NKNKLIRYLLNNILFQNTYISILVKGSRSFQMERIVDIIRDQFEC 459


>gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
 gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 203/441 (46%), Gaps = 26/441 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G        
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDTR--YIV 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I 
Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191

Query: 208 SAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L   K  TIF++ D+ + + +    H +       +G S++  +       
Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIA------YG-SEDGLYINGHVTG 244

Query: 266 CSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            S     E +   +S   EV    IG +   N L  + I      + +   KAL+ + P+
Sbjct: 245 NSPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM A+IS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAEN---KMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +A+ L       V L G    A + +            +  L   +Q     
Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAATRHSYQS------YPDVTALIAELQREKPC 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      ++  L
Sbjct: 412 GKTILIKGSNGIKLSSVVEYL 432


>gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf
           [Rhodococcus equi 103S]
 gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
           [Rhodococcus equi 103S]
          Length = 506

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/498 (27%), Positives = 208/498 (41%), Gaps = 40/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + QA+ G       P   V+G +  DSR I P   F A+ G   DGHD   
Sbjct: 1   MIPM-TLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHAA 59

Query: 59  HAVQ---------KGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARL 104
            AV          +  G+  +  + + + G+ ++ +    D     VL AL KLA A+  
Sbjct: 60  GAVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHDRDGSGAAVLAALGKLARASVD 119

Query: 105 RSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           R       T++ +TGS GKT+TK++L   LS +    A  GS+NN +G P T  R   D 
Sbjct: 120 RLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADADT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-- 218
            F + E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+   L   
Sbjct: 180 RFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPSA 239

Query: 219 -KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQL 276
              G   LN DD     +  ++ A     +   G S NAD +    +   + ++   +  
Sbjct: 240 ADGGVAVLNADDPLVAAMADRTEA----RVVMVGLSGNADVRATDVRLDDQARASFTLTC 295

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              ++ V     G H   N L    +     A +D    AL    P     +R       
Sbjct: 296 AAGAVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSA--RRMEVRDRS 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLA 393
              T++++SYNANP SM+AAI  L  ++  G G   R  AVLG+M E+G  S   H  + 
Sbjct: 354 DGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVEHDAIG 413

Query: 394 EVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                 +++ + L G    V A+               +          ++  L  GD+V
Sbjct: 414 RFAVRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASAIALLEQELRAGDLV 473

Query: 448 VVKSSNSCGFYRLINLLL 465
           +VK+S S G + + + +L
Sbjct: 474 LVKASQSIGLWEVADAVL 491


>gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 518

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 146/509 (28%), Positives = 225/509 (44%), Gaps = 51/509 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + +   G       P   V+G +  DSR I P   F A+ G H DGH+F  
Sbjct: 1   MIPL-ELAAIARITGGRLSDDADPHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIG---------------SLSIPVFGVDDVLGALNKLAVAAR 103
            A+ +GA  V+   D+  +                 + + P      V+  ++KLA    
Sbjct: 60  DAIAQGAAGVLAAKDVGVAAVIMPKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVA 119

Query: 104 LR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    +I+ ITGS GKT+TK+++   LS+  +T A  GS+NN +G P T+ R    
Sbjct: 120 STLTAEHGLSIVGITGSAGKTSTKDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCTES 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE- 218
             F + E+    +G I  L  +  P   V+  I  AHL  F   E IA+AK E+ E L  
Sbjct: 180 TKFLVAEMSARGIGHIAHLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALPS 239

Query: 219 --KTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCS-EQSWMEV 274
             + G   LN DD     +  ++ A     + +F G+   AD+           ++   +
Sbjct: 240 AAEGGVAILNADDPLVAGMAPRTRA----RVVTFSGQHGAADYYATDISLDDVTRASFTL 295

Query: 275 Q-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                +   V  +  G H   N L    +      D  T  ++LS  H + G   R    
Sbjct: 296 HSPHNEPQRVELNVFGAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGN--RMDVQ 353

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDL 392
                 T+I+++YNANP SM+A I+ L   +    G R IAVLG+M E+G  S S H +L
Sbjct: 354 TRADGVTVINDAYNANPDSMRAGIAALGFTAAARPGVRSIAVLGEMGELGGDSVSAHREL 413

Query: 393 AEVLSLYNISHVWLSGFH--VLALKD-ALPRSIHVHYSETMDGLFLFIQSSL------VD 443
              L+ Y ++H+   G +  + ALKD A  R I+V  +  ++     +Q+ L       +
Sbjct: 414 GNELARYRVTHLVAVGDNDAMDALKDRARDRGIYVASARDVEEATSLVQAILSVPPMGEE 473

Query: 444 G-------DVVVVKSSNSCGFYRLINLLL 465
           G       DVV+VK+SN+ G + + N LL
Sbjct: 474 GWYERDARDVVLVKASNALGLWAVANALL 502


>gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
 gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
          Length = 428

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 199/441 (45%), Gaps = 31/441 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +S DSR I     +FA+ G  ++G+DF + A+  GA   VV+                
Sbjct: 14  KSVSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAAKYKDHPGC----IY 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V DVL AL  L    R   KA +I++TGS GKTTTKE++   LS    T A +G+ NNHI
Sbjct: 70  VADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL+L  +    +F + E+G +H  EI FL  L +P    IT    AHL  F G++ + 
Sbjct: 130 GVPLSLLNIKESTEFAVIEMGANHQKEIEFLCALAQPDFGCITNFGKAHLEGFGGVQGVI 189

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K+E+++ L     TI  N +D      L+   H+       SFGK + + +     K 
Sbjct: 190 KGKSELYQYLIANNKTILYNNEDPIQAGALRQYDHS------ISFGKDQESTYTTSILK- 242

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S   V++Q +   +     G + A N ++   I       +     A+  + P   
Sbjct: 243 ----SNTSVKIQFQDTTINTSLYGAYNATNCMIAASIGRHFDVPIQDIKNAIESYKPNNN 298

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +     G   L+ ++YNANP+SM+ AI   S+++      +I VLGDM E+GE +
Sbjct: 299 RSELRQI----GPHMLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIVVLGDMFELGETA 354

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +   L L  I+ + L G      + +             D      ++S    D
Sbjct: 355 AKEHQAIVAQLKLSKINRIILIGALFHNTQHSFES------YPNFDAFKQ--KNSPFKSD 406

Query: 446 --VVVVKSSNSCGFYRLINLL 464
             ++++K S      R++ LL
Sbjct: 407 PSLILIKGSRGMALERVLPLL 427


>gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis EO147]
          Length = 468

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 117/468 (25%), Positives = 198/468 (42%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSR+ +  + F A+KG H+D H+F+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++     A     G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAAGADARLATAGNFNNDIGLPLTLLRLTAAHRLAVVELGMNHPGETETLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F                 + S + +      ++V  + +G H A+N L + 
Sbjct: 239 G---NRIVDFALHGAGHDTPAAVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNALAST 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  R  +      T+ID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       +A  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDSLYALGAATQPACEAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +             L   ++      ++VK S      R++  L  E
Sbjct: 412 AAARRFDDAAALLAALL-AANFGAHATLLVKGSRFMKMERVVGALANE 458


>gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
 gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
          Length = 508

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 127/502 (25%), Positives = 207/502 (41%), Gaps = 42/502 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++   + G  + +     V   +  DSR I     F A+ G   DGHDFI  
Sbjct: 1   MIAL-TAAEIAHIVGGELVHVDDDATVTQPAEFDSRKIREGSLFLALPGARVDGHDFIDQ 59

Query: 60  AVQK-----------GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAA--- 102
           AV             G   VVV         +      P      VL AL KLA      
Sbjct: 60  AVAAGATMALAARDVGQPAVVVKPLGKQDSNADAFAHDPDGSGAAVLEALGKLARYVVDE 119

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
             + +  ++ +TGS GKT+TK+M+   L +   T A  GS+NN IG P T+ +   +  +
Sbjct: 120 LKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGPTVAPKGSFNNEIGHPYTVLQCTPETKY 179

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--- 219
            + E+    +G +  L  +  P I  +  +  AHL  F   E IA AK E+ E L     
Sbjct: 180 LVAEMSARGIGHVAHLARIAPPTIGAVLNVGTAHLGEFGSREVIAQAKGELVEALPAAEQ 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCS-EQSWM 272
            G   LN DD +   +  ++ A     +  F   ++      AD++    +     ++  
Sbjct: 240 GGVAVLNADDDYVTGMAPRTQA----KVVFFSADESSERHATADYRATNVQLDDFARASF 295

Query: 273 EVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           ++ +  G++  +     G H   N L  + +      D +   KA++         +R  
Sbjct: 296 DLHVPDGRTFPIQLQVYGAHQVANALAAIAVAVESGIDAEQVAKAMAAHVAASE--RRMD 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISP---HGEGRRIAVLGDMCEMGELSQSF 388
                G   +I++SYNANP SM+A I  L++ +    H +    AVLG M E+G+ ++  
Sbjct: 354 VQQLTGNIVVINDSYNANPDSMRAGIDALARTAAGPTHQDASSWAVLGQMGELGDSAEDE 413

Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
           H  L E L    I  +   G   +V AL D      ++             + + +   D
Sbjct: 414 HSSLGEYLVGRGIDRLIAVGESSNVHALADKAEELGLNTSRVPDTSTAADLVAAEVRPDD 473

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           VV+VK+S + G +R+ + L  +
Sbjct: 474 VVLVKASYADGMWRVADSLAAK 495


>gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis C6786]
          Length = 468

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 117/468 (25%), Positives = 198/468 (42%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSR+ +  + F A+KG H+D H+F+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++     A     G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAAGADARLATAGNFNNDIGLPLTLLRLTAAHRLAVVELGMNHPGETETLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F                 + S + +      ++V  + +G H A+N L + 
Sbjct: 239 G---NRIVDFALHGAGHDTPAAVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNALAST 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  R  +      T+ID++YNANP SM+AAI V
Sbjct: 296 AAAFAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       +A  
Sbjct: 356 LAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDSLYALGAATQPACEAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +             L   ++      ++VK S      R++  L  E
Sbjct: 412 AAARRFDDAAALLAALL-AANFGAHATLLVKGSRFMKMERVVGALANE 458


>gi|254303960|ref|ZP_04971318.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324152|gb|EDK89402.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 608

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 202/439 (46%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KG  LV+ +   V         + 
Sbjct: 199 IKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGVSLVIADNTDVKDER-----IL 249

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YNNH
Sbjct: 250 KVSNTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSAKAKTLKTEGNYNNH 309

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E + K  T F+  DD +   L           +   G + N + ++  ++  
Sbjct: 370 FKAKTELLEFVNKENT-FVCGDDEYLAKL----------DVNRIGFNDNNNHKIESYEFS 418

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S     L GK  +     +G H   N  + + +   +    +     L        R
Sbjct: 419 DKGSKFI--LDGKEYK--ISLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNMR 474

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 475 FQEIKI----GEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGENEV 528

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +HID+   L    I  ++L G  +    D   +S        Y  T +G+   +++  +
Sbjct: 529 DYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKSKSEEYRFWYYPTKEGIVESLKNIRM 588

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           +  V+++K+S       +I
Sbjct: 589 EK-VILLKASRGTALEDII 606


>gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha153]
          Length = 452

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVDPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLASVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +   +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTR---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAVALSLAAGLSLNDVAEGLKGFSNIKG---RLNVKAGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
 gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
          Length = 449

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 212/444 (47%), Gaps = 20/444 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--V 85
            G+S D+R I P   F A+KG ++DG+ F   A+  GA   +V+   VA     S     
Sbjct: 19  TGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTDRC 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L AL  LA   R      +I +TGS GKTTTKE++   LS     YA  G+ NN
Sbjct: 79  LLVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNLNN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL  +    +  I E+G +H  EI FL  +  P   +IT I  AHL  F GIE 
Sbjct: 139 HIGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGLITNIGKAHLEGFGGIEG 198

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELL-KAKSHALGIKTIYS---FGKSKNADFQL 260
           +   K E+++ L +   T+F+N  D     + + +  ++  +T ++   F  + N D   
Sbjct: 199 VRIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTFAEAIFYPAANPD--- 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +      +S + V       E+  H  G +   NML  L I        + A +A++ +
Sbjct: 256 EETTTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGVSPEEANRAIADY 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +P   R ++      +G  T++ ++YNANP+SM AAI   +        R+  +LGDM E
Sbjct: 316 NPTNNRSQQV----IKGTNTVLLDAYNANPSSMAAAIQQFAATPAK---RKAVILGDMYE 368

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S++ H  L ++++  N   V L+G  +    + LP++   +Y      L  ++  +
Sbjct: 369 LGDESEAEHAALGKLIAESNFDLVILAGKDMRFALEYLPKA---YYFPDKFSLHNWVMDN 425

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
            +    +++K S       ++  +
Sbjct: 426 PMADTHILIKGSRGMSLESVVPFI 449


>gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 514

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 135/500 (27%), Positives = 215/500 (43%), Gaps = 40/500 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL    D+     G  + G  P   V G +  DSR+++    F  + G   DGHDF  
Sbjct: 1   MIPL-RLGDIAAITGGELVDGAEPDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFAG 59

Query: 59  HAVQKGAGL-----------VVVNTDMVASIGSLSIPVFGVDD-------VLGALNKLAV 100
            AV +GA             ++V+      +   +       D       V+ AL+KLA 
Sbjct: 60  IAVDQGAVACLEGHRTGQPGILVDNSDADELSDSATSYVLEADNTGEGQAVITALSKLAR 119

Query: 101 AA----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           A        +  T+I +TGS GKT+TK+++   L    +T A  GS+NN +G P T  ++
Sbjct: 120 AHTKKAVEENGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGSFNNELGHPYTALKV 179

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + + EL    +G I  L  +  P I  +  +  AH+  F   E IA AK E+ E 
Sbjct: 180 GEHTTYLVSELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGEFGSKENIAQAKGELVEA 239

Query: 217 LEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWM 272
           L      G   LN DD     ++ ++ A     I +FG    A  +    +  +  ++  
Sbjct: 240 LPPAADGGVAVLNADDPLVIGMRNRTSA----RIVTFGMDNPATVRAEDVELDAVARAAF 295

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            + ++G+    +     G H   N L    +      D ++   ALS          R  
Sbjct: 296 TLCIEGEKARRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALS--EHVSSSEYRMD 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                   T+I++SYNANP SM+A I  L+   S   +    AVLG M E+G+ S + H 
Sbjct: 354 VRTRADGVTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMGELGDDSLTEHA 413

Query: 391 DLAEVLSLYNISHVWLSGFH--VLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            LAEVL   ++ ++   G +  + AL  +A    ++     T       +   L  GDVV
Sbjct: 414 ALAEVLYNRHVDNLVAVGDNTAMGALALEARRYGVNTEVVSTTQEAADIVLRHLKPGDVV 473

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +VK+SN+CG + + + +L +
Sbjct: 474 LVKASNACGLWAVAHTILAD 493


>gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 613

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 206/441 (46%), Gaps = 35/441 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   V         + 
Sbjct: 203 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIADNTDVKDER-----II 253

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA+  R +    ++ ITGS GKTTTK+++   LS   KT    G+YNNH
Sbjct: 254 KVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNH 313

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + +
Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNV 373

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E + K  T F+  DD +   L           +   G + +  +++  +K  
Sbjct: 374 FKAKTELLEFVNKENT-FVCGDDKYLAKL----------DVNKIGFNNSNTYKIESYKFS 422

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S     L GK  E+    +G H   N  + + +   +    +     L        R
Sbjct: 423 DKGSKF--VLDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMR 478

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  ++A+LGDM E+G+   
Sbjct: 479 FQEIKI----GEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKVAILGDMLELGDNEI 532

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +HID+   L    I  ++L G  +    +   +S        Y  T +G+   +++  +
Sbjct: 533 DYHIDVLNYLLDKKIKLIYLYGERMKKAYNMFMKSKSEEYRFWYYPTKEGIVESLKNIKM 592

Query: 443 DGDVVVVKSSNSCGFYRLINL 463
           +  V+++K+S       +I L
Sbjct: 593 EK-VILLKASRGTALEDIIKL 612


>gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
 gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
          Length = 432

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 202/441 (45%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQR--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +V P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L K    T+F+++D+++   +           +  +G     D  +   +   
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAE------GLNLIPYGTED--DLYV-NGRITG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      GKS +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +   N    TLI ++YNANP SM AA+     +       ++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH---KMLILGDMRELGA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  +A+ L       VWL G    A + +            +  +   +++    
Sbjct: 358 ESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      +++ L
Sbjct: 412 GYTILIKGSNGIKLSSVVDYL 432


>gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 613

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 206/441 (46%), Gaps = 35/441 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +   V         + 
Sbjct: 203 IKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIADNIDVKDER-----II 253

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA+  R +    ++ ITGS GKTTTK+++   LS   KT    G+YNNH
Sbjct: 254 KVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNH 313

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      + +
Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNV 373

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E + K  T F+  DD +   L           +   G + +  +++  +K  
Sbjct: 374 FKAKTELLEFVIKENT-FVCGDDEYLAKL----------DVNKIGFNNSNTYKIESYKFS 422

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S     L GK  E+    +G H   N  + + +   +    +     L        R
Sbjct: 423 DKGSKF--VLDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMR 478

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +     G    I+++YNA+P SMKAAI  L++I  + +  ++A+LGDM E+G+   
Sbjct: 479 FQEIKI----GEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKVAILGDMLELGDNEI 532

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +HID+   L    I  ++L G  +    +   +S        Y  T +G+   +++  +
Sbjct: 533 DYHIDVLNYLLDKKIKLIYLYGERMKKAYNMFMKSKSEEYRFWYYPTKEGIVESLKNIKM 592

Query: 443 DGDVVVVKSSNSCGFYRLINL 463
           +  V+++K+S       +I L
Sbjct: 593 EK-VILLKASRGTALEDIIKL 612


>gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
 gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
          Length = 432

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 204/443 (46%), Gaps = 30/443 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR+      F A+KG  ++G+ F   A++ G+   VV+    A  G        
Sbjct: 14  TGVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAGDTH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R +    II ITG+ GKTTTKE+++  LS        +G+ NN I
Sbjct: 72  VDNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNLNNPI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + + G+ E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLKAEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L + G  TIF++ D+ +   +     A G+  + ++G+  N          
Sbjct: 192 RTKGELYDYLRRQGNSTIFIHQDNPYLTQI-----AWGLNPV-TYGEEDNLYI---NGHV 242

Query: 266 CSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                ++  + +    G+  EV    IG +   N L  + I      +     KAL  + 
Sbjct: 243 TGNSPYLTFEWKAGKAGERHEVQTQLIGDYNFPNALAAITIGHFFGVEAAKIDKALHEYE 302

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +  + A N    TLI ++YNANP SM AAIS    +     G ++ +LGDM E+
Sbjct: 303 PRNNRSQLKKTADN----TLIIDAYNANPTSMLAAISNFHNMQA---GGKMLILGDMREL 355

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S   H  + + L  Y    V L G    A +   P             L   +Q + 
Sbjct: 356 GKDSPGEHQKIVDCLEEYGFKDVALVGELFAATRHTYPT------YPDAPALIAELQKNK 409

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN      +++ L
Sbjct: 410 PCGKTILIKGSNGIKLNTVVDYL 432


>gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 447

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 207/467 (44%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLGEIAAVVGGTVAGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            + GA   + +           +P   V+D   AL  LA    ARLR   T++ +TGS G
Sbjct: 60  GRAGAVATLGSRPTP-------LPTVVVEDAQSALQALAAHVVARLRDGLTVVGLTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS   T A IGS NN +GVPLT+ R      F   E+G  H+G+I  L
Sbjct: 113 KTSTKDLLAAVLSSAAPTIATIGSLNNELGVPLTMLRADPATRFLALEMGARHIGDIAEL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV P IAV+  +  AHL  F   E IA  K E+ +GL   GT  L  DD     +++ 
Sbjct: 173 TGLVAPDIAVVLNVGQAHLGEFGSREAIARTKGELVQGLAPGGTAVLGADDPRVVAMRSL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       + +FG+ ++AD ++              ++    S  V    +G H A N  
Sbjct: 233 TDG----PVLTFGRVEHADVRVLDLALDRLGRPSFTLRTADASAPVTLPLVGGHQALNAS 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       +D A  AL+     + R +    A      TL+++SYNANP S +AA+
Sbjct: 289 AAAAAGLAAGVPLDVAAAALATASLSQWRMELRDLAC---GATLLNDSYNANPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I     GRRIAVLG+M E+G+ S++ H  + E  +      V   G     + D 
Sbjct: 346 DALAAI---EGGRRIAVLGEMRELGDGSEAEHRAVGEYAASR-ADVVVAVGEAARPIADG 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 V      +    +++  L  G+VV+VK+S       +   L
Sbjct: 402 A--GERVVALADNNAAVDWLRGHLAAGEVVLVKASRGARLDEVAVAL 446


>gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 487

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 131/476 (27%), Positives = 205/476 (43%), Gaps = 22/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ +   G          V G + +DSR+  P   F A+ G   DG D    
Sbjct: 1   MIAL-TAAEVAELTGGRLAAGTASTPVTGPVVVDSRAAGPGSLFVALPGERVDGADHAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-----IIAIT 114
           AV  GA LV+   ++    G+  +    V+D + AL +LA     R ++T     ++ +T
Sbjct: 60  AVAAGASLVLAEREVELPAGAALV---VVEDGVTALGRLARGVLERLRSTGSGPLVVGVT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTK++L   L+      A  GS+NN IG PLT+ R        + E+G   LG 
Sbjct: 117 GSQGKTTTKDLLARVLAPAGPVVAPAGSFNNEIGAPLTVLRADRGTVTLVVEMGARGLGH 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + RP + V   +  AH   F  +E  A AK E+ E L   G   LN DD     
Sbjct: 177 IAALCAIARPDVGVELVVGAAHAGEFGSLETTARAKGELVEALPAEGLAVLNADDDRVAA 236

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +  ++ A     + +FG+  +AD +    +  +  +    +Q  G    V     G H  
Sbjct: 237 MATRTRA----RVLTFGRGAHADVRALDVELDALARPRFTLQHGGGRARVQLQLHGEHQV 292

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +       ++    +LS          R +        T++ ++YNANP SM
Sbjct: 293 TNALAAAAVALGTGRPLEEVAASLSAATELSPG--RMQVVERPDGVTVVHDAYNANPDSM 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA+  L  ++     R  AVLG+M E+G  S+  H  L   +   ++  + + G     
Sbjct: 351 RAALKALVGMAGA-GRRTWAVLGEMLELGPASREEHDLLGRTVVRLDVDQLLVVGAGARP 409

Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +               ++  +D    F+++ L  GDVV+VKSSN  G  RL   L+
Sbjct: 410 VYTGAVMEGSWGEEAAFATDVDDALEFLRARLRPGDVVLVKSSNGAGLARLATTLI 465


>gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240149]
          Length = 436

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 198/450 (44%), Gaps = 22/450 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +   ++    
Sbjct: 4   ESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                VDD L AL  LA   R      +  ITGSVGKTT KEML   L          A 
Sbjct: 63  ---LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +   +FG     D 
Sbjct: 180 GFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTR---TFGIDSG-DV 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                         ++    +   VV    G H   N      +       ++   + L 
Sbjct: 236 HAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLK 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMKAAI VL+++       RI V+GDM
Sbjct: 296 GFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAP----RIFVMGDM 348

Query: 379 CEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE  + + H ++        I   +  G + +   +         +    D L   +
Sbjct: 349 GELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQVL 406

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  L +   V+VK S       ++  L ++
Sbjct: 407 RHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
 gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
          Length = 493

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 175/478 (36%), Positives = 245/478 (51%), Gaps = 31/478 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW    + +A+ G +        V G+ +DSR +   + F A+KG   DGH F+  A   
Sbjct: 26  LWHSKAIAEAVGGTA---SSDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDKAFAN 82

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+         +  P   V+D   AL  LA AAR R++A II +TGSVGKT  K
Sbjct: 83  GAAAAIVDRP-------VDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTGVK 135

Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E +  +L  +S    +    SYNNH+GVPL+LARMP    FGIFE+GM++ GEI  LT  
Sbjct: 136 EAIFASLERASRGAAHRSTRSYNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEGLTTQ 195

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+AVITTIAPAH+ N   +E IA AKAEIF GLE  G   +  D   FE L+  +  
Sbjct: 196 VRPHVAVITTIAPAHIENLGSMEAIADAKAEIFAGLEPGGVAVIPADSEHFERLRLAALR 255

Query: 242 LGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQL-----QGKSMEVVHHGIGYHMAQN 295
           +   ++ SFG++ NAD +L       +  S +  +       G  +       G H   N
Sbjct: 256 MSA-SVVSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAEPGDHWVIN 314

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  +  V     D+  A  AL+     +GRG R+      G   LIDESYNANPASM+A
Sbjct: 315 SLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPASMRA 374

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            ++ L Q       RRIAVLG M E+G+ +  FH  L+E L   ++ +  L G  + AL 
Sbjct: 375 TLAQLGQTPSS---RRIAVLGSMKELGDFAAKFHAGLSEPLIAADVDYALLVGDEMRALA 431

Query: 416 --------DALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLL 464
                   ++L   +   +  + +     +Q   +V GD V+VK SNS G  +L++  
Sbjct: 432 RELGKPAFNSLGNPLEWEHCNSAEEAIGLLQEFGIVAGDAVLVKGSNSVGLGKLVDHF 489


>gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 432

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 201/441 (45%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQR--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +  P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L K    T+F+++D+++   +           +  +G     D  +   +   
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAE------GLNLIPYGTED--DLYV-NGRITG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      GKS +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +   N    TLI ++YNANP SM AA+     +       ++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH---KMLILGDMRELGA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  +A+ L       VWL G    A + +            +  +   +++    
Sbjct: 358 ESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      +++ L
Sbjct: 412 GYTILIKGSNGIKLSSVVDYL 432


>gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 483

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 125/486 (25%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L + +            + G ++ DSR I   + F A+ G H DGH F+    ++
Sbjct: 4   MTIDALREIVGLEP--GTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARR 61

Query: 64  GAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109
           G  + VV          D         + +  VDD   AL K+A A   + ++       
Sbjct: 62  GGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSG 121

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + 
Sbjct: 122 KLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   L
Sbjct: 182 EMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAIL 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   K    +    K  S+  +   +       +V 
Sbjct: 242 NADDPRVEAMSGRTAG----RLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKAQVE 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N L    I  +          A ++ H       R           LID+
Sbjct: 298 MQLIGAHHVSNALAAAAIAHVAGMATHEI--AAALHHATPQSEHRMHLVHLADGVDLIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I  +
Sbjct: 356 AYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIPVL 413

Query: 405 WLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G     +     AL      H++         +Q  +   D++++K S+    ++L 
Sbjct: 414 IGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLA 473

Query: 462 NLLLEE 467
             + E 
Sbjct: 474 QSIEER 479


>gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
          Length = 464

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 206/464 (44%), Gaps = 39/464 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +    +N +SI+S+ +   + F AI+G    G+ F+  A++KGA  V  +  +       
Sbjct: 16  ISDFKINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGAFAVYDSEAVKIDEKYA 71

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               F V D +  L K A   R      +I ITGS GKTT K+M+   LS   K     G
Sbjct: 72  ERAFF-VKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEG 130

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNNHIG+P TL R   D DF I E+GMS  GEI  L  +  P I VIT I  +HL    
Sbjct: 131 NYNNHIGLPFTLLRAEKDDDFIILEMGMSDFGEIDLLGQIALPDINVITNIGESHLEFLK 190

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGIKTIYSFGKSKNAD 257
             E +  AK EI   ++   T+ +N DD + + +KA+      AL ++      + K +D
Sbjct: 191 TKENVFLAKTEIIPHIKS--TLVINGDDKYLKNVKAENIEIVRALNLRNNEY--EDKTSD 246

Query: 258 FQLRKWKQCSEQSWMEVQLQGK------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           F           +   ++  GK            + +G H   N++M + +      +  
Sbjct: 247 FYYGDIHFDESGTNFFLKYFGKMCQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDK 306

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +A+         G R++   N G  T I+++YNA+P SMK ++   S I    +  +
Sbjct: 307 IISEAVKNIELT---GMRFQIIEN-GNTTYINDAYNASPMSMKKSLETFSLI--FNDKLK 360

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP------------ 419
           I VLGDM E+GE     H DL + +   N   ++L G  + +L + +             
Sbjct: 361 IMVLGDMLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKENMDNGNLENES 420

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++    Y +  + +   I+  + +   V++K+S       +I 
Sbjct: 421 LKNKEFEYFDEKNKIKDRIRE-ISESKAVLLKASRGMKLEEIIE 463


>gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
 gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
          Length = 429

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 200/441 (45%), Gaps = 28/441 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I+    +  + +DSR +     FFAIKG    G++ +  A++ GA LV+ +   +     
Sbjct: 16  ILESMDIKDVCMDSREVKKGSLFFAIKG----GNNHVEEAIKNGAVLVIYDRKDLLIQDE 71

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +      +D +  + KLA   R  ++  ++AITGS GKTTTK+++   LS   +T    
Sbjct: 72  NT---IFTEDTVNFMQKLARDYRKSNQTKVVAITGSNGKTTTKDIIYSVLSQRFRTKKTQ 128

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G++NNHIG+P T+     + +  + E+GMS  GEI  L  +  P   +IT I  +HL   
Sbjct: 129 GNHNNHIGLPYTILNAQPEDEVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYL 188

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E +  AK E+ E +    TI    DD + + +       GIK     G      F++
Sbjct: 189 KNKENVFKAKGELLEYVHSKNTIVF-GDDYYLKDI------HGIK----VGYGDENTFKI 237

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            ++ +  + +  +  L GK+  +  +  G H   N    + +   +   +    K L   
Sbjct: 238 SEFIENDKGAEFK--LAGKTYRIPIN--GEHNVINASFAVVLGLEMGLSLSEIEKGLQGV 293

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R ++      +G    I+++YNANP SMK AI    ++  +    +I VLGDM E
Sbjct: 294 ELTPMRFQKIE----KGKKLYINDAYNANPTSMKLAIETFDKL-YNKRACKIIVLGDMLE 348

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE S+ +H ++   L      +++L G  +  L         V+Y E    +   I  S
Sbjct: 349 LGEKSEEYHKNIKYYLKKSKAEYIFLYGKEMKNLWSVCQDDKRVYYFEDKILISKKI-ES 407

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
           + +  V+++K S       +I
Sbjct: 408 INEKSVILLKGSRGMKLEEII 428


>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
          Length = 481

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 134/488 (27%), Positives = 213/488 (43%), Gaps = 34/488 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  + G  P         DSR       F AIKG   DGH F+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLVAGDGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHGFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAIT 114
              +GA   +V+      +   ++P   V+D + AL  LA     R +       +I +T
Sbjct: 60  VADQGAAAAIVD----HEVACTTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFDLIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  LS++  T A IGS+NN IG+PLT  R+  D  F + E+G +H+GE
Sbjct: 116 GSVGKTTTKDLLSALLSTLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+  ++  +  AHL  F   E IA AK+EI +GL   GT  LN DD +   
Sbjct: 176 IARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGY 290
           +   +       +  FG+    D ++      ++ +    +      G+ + V     G 
Sbjct: 236 MAQFASG----DVLWFGQGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGR 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNAN 349
           H   N L    +       +    + L+  H              QG  F LID+S+NAN
Sbjct: 292 HNVMNALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNAN 351

Query: 350 PASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P SMKA +  L   + +   +  R+A+LG M E+G   +  H  + E  +   +  +   
Sbjct: 352 PDSMKAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITV 411

Query: 408 G--------FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVD--GDVVVVKSSNSC 455
           G            +L +   R     V   +T+D     +     +    VV++K S++ 
Sbjct: 412 GSPSDAHLNVLAESLAEGATRGRAASVDCVQTIDEAERIVFDLAKNHTDTVVLLKGSHAS 471

Query: 456 GFYRLINL 463
           G   L   
Sbjct: 472 GLSALAER 479


>gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
 gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
          Length = 436

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ DSR+      F A+KG ++DG+ +   A++ GA  V+V+   V   G        V
Sbjct: 16  QITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVDNPEVVIEGDDR--YILV 73

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL ++A   R   K  IIAITG+ GKTTTKE++   L    KT+   G+ NNHIG
Sbjct: 74  HDSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNLNNHIG 133

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+  M    +  + E+G +H GEI+ LT +V P   +IT +  AHL  F  +E +  
Sbjct: 134 VPLTILSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNVGKAHLEGFGSLEGVIR 193

Query: 209 AKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K+E+++ L  +K GT F+N+DDS          A GI  + ++G S++     +     
Sbjct: 194 TKSELYDYLKEKKNGTAFINFDDSILMK-----QAEGISHLITYGTSESTSVCGKIDDSS 248

Query: 267 SEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              S  W +  L      +    IG +   N+L  + I       ++   +AL  + P+ 
Sbjct: 249 LTLSLEWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDIKEALEQYTPQN 308

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   NQ    LI ++YNANP SM AA++    +       ++ +LGDM E+G+ 
Sbjct: 309 NRSQFKKTESNQ----LIIDAYNANPTSMLAALNNFCNLKAEH---KMVILGDMRELGKD 361

Query: 385 SQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLV 442
           S   H  + + L+   +I  V L G       D   ++ H   + + ++ +  ++ S+ +
Sbjct: 362 SLLEHQKIIDFLTKHKDIEKVLLVG-------DEFCKTNHPYTHFKDVNEVKNYLVSNPI 414

Query: 443 DGDVVVVKSSNSCGFYRLIN 462
               +++K SN    + L++
Sbjct: 415 TDHTILIKGSNGIRLFTLVD 434


>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 462

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 199/465 (42%), Gaps = 20/465 (4%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +  +A+QG   +  +    VN +  DSR   P + FF ++G   DGH F   A  +GA
Sbjct: 5   LGEAARAMQGTADLQGLENAPVNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V + D+ +   +   PV  VDD L AL +L    RL++   ++ ITGS GKTTTKE+
Sbjct: 65  LAIVAHRDLGSIQNT---PVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L +         ++NN +G+PL+L     D DF I ELG+++  ++  L  ++ P 
Sbjct: 122 LAEVLKTRFTVGKNHKNWNNQLGLPLSLLMQKGDEDFWIMELGINNTTDMDELGEILLPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+I  + P HL     +  +A AKA + + L      F+N D  + +L +       + 
Sbjct: 182 AALILNVGPCHLEGLGDVSGVARAKARLLDYLRAEHRAFINLD--YPDLKREAGARPDLN 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T +   +   AD ++      S  +   + L  + +       G H  +N+     +   
Sbjct: 240 TTWFSSRDPEADCRVS----HSRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVALE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L      E R     C    G +T+ID+SYNANP SM+AA+     ++ 
Sbjct: 296 YGMQPDEIQAGLEKSSLPEQRM----CISRSGDWTIIDDSYNANPMSMQAALETARSLAS 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIH 423
              G  + VLGDM E+G      H DL   L     + ++ +G ++  +   +    S  
Sbjct: 352 --GGDLVLVLGDMAELGRDEARAHRDLGRSLCAGAFTALFYNGDNLEHVLSGMNGEGSRK 409

Query: 424 VHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
            H  + +              G V++ K S   G    +      
Sbjct: 410 AHKIKDVSSFLSAHDKLGCRHG-VILFKGSRRAGMENFVQAFKAR 453


>gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 427

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 202/438 (46%), Gaps = 25/438 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +S D+R I     F A+KG ++D + F   A+ KGA  V+++     +     I V  
Sbjct: 14  TSVSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKDKMILVL- 72

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             D L  L +LA   R +    IIA+TGS GKTTTKE++ + LS      A IG+ NNHI
Sbjct: 73  --DSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     D D GI E+G +H  EI  L  +  P+   IT    AHL  F GI+ + 
Sbjct: 131 GVPLTLLSFDEDTDIGIVEMGANHQKEIELLCSIAEPNFGYITNFGKAHLEGFGGIDGVI 190

Query: 208 SAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            AK+E++  LE+   T F+N DD        ++        YSF  +K +D ++      
Sbjct: 191 KAKSELYNYLEENKQTAFVNLDDEI------QNQKTMQIMRYSFSIAKESDVKIDFVVAN 244

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  V++  K M++  H IG + A N+   + I        D    A+  + P   R
Sbjct: 245 P-----MVEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIADDDIKDAIQNYIPTNNR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N     +I ++YNANP+SM+AAI+   Q+       +IA+LGDM E+G  S 
Sbjct: 300 SQLIEKNSNN----IILDAYNANPSSMEAAITNFIQLKAKD---KIAILGDMFELGNDSL 352

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + E+         +  G      K  +    ++H+ +T +      ++     + 
Sbjct: 353 IEHKKIIELFINGPEIETYFIGKDFYCNKIEMK---NIHFFDTYESFSKSFKTRKTSKNT 409

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      R + +L
Sbjct: 410 ILIKGSRGMSLERTLEIL 427


>gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
 gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
          Length = 482

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 197/470 (41%), Gaps = 20/470 (4%)

Query: 2   NPLWTFH---DLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           +P+ T H   DLL+A I G  +       +     D+R++A  + F A+KG  +D H F+
Sbjct: 8   SPMMTLHQAFDLLRARIPGVRLVGEGATPLARAHTDTRTLAAGDLFVALKGERFDAHQFL 67

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A               A +    +P   V D L AL  LA   R +    +IA+TGS 
Sbjct: 68  SQAR----RAGAAAAIAHAGLADAGLPGIEVPDTLAALGALAAGWRAQRDLPLIAVTGSN 123

Query: 118 GKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTT  +M+   L + K   A    G++NN +GVPLTL R+    +  + ELGM+H GEI
Sbjct: 124 GKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGEI 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  + RP +A++      HL     +E +A     +   L   GT      D+F  L 
Sbjct: 184 ANLADIARPTVALVNNAQREHLEFMHTVEAVARENGSVLSALPADGTAVFPAADAFTPLW 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +   G +   +FG++   + +    +       + +     + +      G H   N
Sbjct: 244 RELA---GTRHCLTFGETAG-EVRCAAAQWGGGAWQVRIDTPNGAFDTRLAIAGRHNVTN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L            + +  + L+ F P  GR +           T++D+SYNANP S+ A
Sbjct: 300 ALAATACALAAGVPLASIAQGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHA 359

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+ +     G R+ VLGDM E+G+    FH +         I  ++  G       
Sbjct: 360 AIEVLAALP----GPRLLVLGDMGEVGDQGPQFHAEAGAHARARGIEQLFALGDLSAHAV 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            A   +    + + M  L   +  +L     V+VK S      +++  L 
Sbjct: 416 QACGTAAR--HFKDMATLQAAVGQALPTVGSVLVKGSRFMKMEQVVQALQ 463


>gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis G2136]
          Length = 436

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 198/450 (44%), Gaps = 22/450 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +   ++    
Sbjct: 4   ESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA- 62

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYAC 139
                VDD L AL  LA A R      +  ITGS GKTT KEML   L          A 
Sbjct: 63  ---LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLAT 119

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
            G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+  
Sbjct: 120 AGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGC 179

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +   +FG     D 
Sbjct: 180 GFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTR---TFGIDSG-DV 235

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                         ++    +   VV    G H   N      +       ++   + L 
Sbjct: 236 HAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLK 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +G   R          TLID++YNANP SMKAA+ VL+++       RI V+GDM
Sbjct: 296 GFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMPAP----RIFVMGDM 348

Query: 379 CEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            E+GE  + + H ++        I   +  G + +   +         +    D L   +
Sbjct: 349 GELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQVL 406

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  L +   V+VK S       ++  L ++
Sbjct: 407 RHDLPERATVLVKGSRFMEMEEVVEALEDK 436


>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 438

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 127/459 (27%), Positives = 201/459 (43%), Gaps = 27/459 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +  A  G   G  P   V+  SIDSRS  P + F  I     DGHDFI  AVQ GA 
Sbjct: 5   ASQIAAATGGTLHG--PDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAP 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + + +     ++G+ ++    V D   AL  L    R     +++ +TGSVGKT+TK++L
Sbjct: 62  VYLTDRAPDPALGATAV---QVADTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLL 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  +T A   S+NN +G+PLTL   P D +  + E+G   +G I  L  +  P +
Sbjct: 119 AGVLGTTFRTAASEKSFNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSIASPTV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   HL  F  ++++A AK E+ E L   G   LN D      + +++ A     
Sbjct: 179 GVLTRVEAVHLEMFGSLDDVAQAKGELVEALPADGLAVLNADHPVVAAMTSRTSA----R 234

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G    AD +        E ++   +     +  V     G H   N L        
Sbjct: 235 VLTYGVDPGADVRATDIVLDDELRASFTLHSPWGTTAVRLGARGEHQVSNALAAAAAGGG 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++   +           G R   +      T+I+++YNANP SM A +S L++I  
Sbjct: 295 IGVPIEKIAEG---LLGANLSGLRMELSTTAAGVTIINDAYNANPTSMAAGLSALARIDA 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GRR AVLG M E+G+ S + H ++A+      ++ +           D       V 
Sbjct: 352 ---GRRFAVLGTMAELGDDSAAAHREVADQAVALGVTVI---------AVDEPAYGAGVT 399

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +DG    +   L  GD V+VK S      R+   L
Sbjct: 400 HVSGVDGAVDAL-GDLRSGDAVLVKGSRVAALERVAQAL 437


>gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
 gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
          Length = 440

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 201/468 (42%), Gaps = 36/468 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ +  Q H +          ++ DSR+      F A+KG  +DG+ F   A++KG
Sbjct: 1   MDIQEIYKIYQAHPV----------VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKG 50

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               +++    A  G        VDD L    +LA   R +    +I ITG+ GKTT+KE
Sbjct: 51  CSYAIIDEKEYAKAGDER--YILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKE 108

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  L+     +    +YNN +GVP TL  +  + +  + E+G SH G+I  L   V P
Sbjct: 109 LISAVLAEKFNVHHTEANYNNDVGVPRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEP 168

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALG 243
              +IT +  AHL  F   E +   K E+++ L+  G  +FLN  +     +  +     
Sbjct: 169 TCGLITNVGRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQ---RA 225

Query: 244 IKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
              I ++G+ + AD Q          K   + S +       +  EV  H IG +   NM
Sbjct: 226 FDRIITYGQDETADVQGYVVSCAPCLKFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNM 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + I             AL  + P   R +    A N+    LI ++YNANP+SM AA
Sbjct: 286 LAAIAIGLHFGVTPQQINYALENYVPHNNRSQLTETAHNK----LIVDAYNANPSSMAAA 341

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I     +       ++A+LGDM E+G+ S   H  + E+L   +I +VWL G      + 
Sbjct: 342 IENFQLMEVEN---KMAILGDMRELGDASAEEHQKVVELLKATDIRNVWLVGEEFGKTQ- 397

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        +D +   I     +   +++K SN    + L  LL
Sbjct: 398 -----TDFLKFRDIDEVKKEIALHRPEDHYILIKGSNGIKLFELPALL 440


>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
 gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
          Length = 473

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 140/472 (29%), Positives = 211/472 (44%), Gaps = 19/472 (4%)

Query: 5   WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           ++    ++ I    +     P   V+ I+ DSR++    AF A+KG   DGHDF   A+ 
Sbjct: 3   FSIETAVRRIGARIVVEPSSPLSRVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIA 62

Query: 63  KGAGLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA LV+V  D+              +  V D   AL+ LA A R    A ++ +TGSVG
Sbjct: 63  AGAALVIVTDDLPEQALAFAREAGCCIARVPDAQQALSALASAWREELSAHVVGVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT+ +    LS+  KT +  G++NN +G+PLT+   P D +  + E+GM   G+I  L
Sbjct: 123 KTTTRGLAAQVLSARFKTESTKGNFNNELGLPLTVLTAPKDCEALVVEMGMDGRGQIARL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELL-- 235
             + RP  A+IT +  AHL      E IA AKAEI E L    G  FL  D  F + +  
Sbjct: 183 AAVARPERAIITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIE 242

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
            A+    GI+ +   G+   +D    +    +E      +  QG+S        G H  Q
Sbjct: 243 HARLAERGIRVVRFGGEGHASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQ 302

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N      I       +     AL+    + GR    R       + L+D++YNA+P SM 
Sbjct: 303 NACGAAAIGLSYGMSLPDVCHALAGAQAQAGRQALLRMPE---GYRLLDDAYNASPESMA 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A++SVLS  S    G RIAVLGDM E+G  S + H  +   ++   I  +   G     +
Sbjct: 360 ASLSVLSSFSTS--GSRIAVLGDMGELGSASDAGHDSVGRAVAGAKIDALICVGPKSRRI 417

Query: 415 KDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             A   +      +   +        +   +   DVV+ K+S+  G  +L  
Sbjct: 418 AHAARAAGMDPARIQEVDDAGAAREALSRIVRADDVVLAKASHCMGLSKLAE 469


>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 477

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 194/473 (41%), Gaps = 22/473 (4%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+  A  G  +       V G ++DSR + P   FFA+ G   DGH F+  A+  GA   
Sbjct: 7   DVAAATGGRLVAGSQGVTVEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGA 66

Query: 69  VVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKE 124
           V+   +   +   + P   V  V D   AL  LA   R R +   ++ ITGS+GKTTTKE
Sbjct: 67  VIARPLAEVLPDGAPPGTAVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKE 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+         G+YN  +G+PLTL  +       + E+ M  LGEI  L  +  P
Sbjct: 127 MAAAVLARRFAVLKSAGNYNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V+T +A +HL     +E +A AK E+ E L + G   LN  D     + A++ A   
Sbjct: 187 DVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRAMAARTRARV- 245

Query: 245 KTIYSFGKS-KNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
               +FG   + AD +    +   +  S   +++ G     V     G       L    
Sbjct: 246 ---LTFGHDGEGADVRAVNVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D  T    L+   P   R +  +     G +TL  + YNA+P S +AA+  L 
Sbjct: 303 VGVALGLDAATIAAGLAEARPAALRNEIRQ----AGPWTLYIDCYNASPTSTRAALHALR 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417
           Q++     R +A+LGDM E+G+ +   H +     +      +   G     + +     
Sbjct: 359 QVAGS--RRAVAILGDMFELGDWAVEGHRETGREAART-ADVLLAVGRWAPQMVEGWIQA 415

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                          L   +   L  GD +++K+S       ++  L     A
Sbjct: 416 GGAGAAAAAYPDKAALLGELDRWLRPGDAILIKASRGMAMEEVVEALTARVAA 468


>gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
 gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 124/441 (28%), Positives = 193/441 (43%), Gaps = 25/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+QKG    VV+    A           VD
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKADDGR--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  LS     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+   G +FLN  +     + A+        I ++G+ + AD Q      C+ 
Sbjct: 194 KGELYDFLKAHDGLLFLNESNVDLMEMAAQRE---FSRIITYGQDETADVQG-NVVSCAP 249

Query: 269 QSWM-----EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                      Q    + EV  H IG +   NML  + I             AL  + P 
Sbjct: 250 FLKFIWQALSHQPSSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIPH 309

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM E+G 
Sbjct: 310 NNRSQLTETAHNR----LIVDAYNANPSSMAAAIENFRLMQVKD---KMAILGDMRELGT 362

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  + ++L    I +VWL G      + +  +         ++ +   I     +
Sbjct: 363 ASGEEHQKVIDLLKNTGIDNVWLVGEEFGKTRTSFRK------FHDVEEVKAEIARCRPE 416

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN    + L  LL
Sbjct: 417 NHYILIKGSNGIKLFELPALL 437


>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium cellulovorans 743B]
          Length = 395

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 194/405 (47%), Gaps = 15/405 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A +G+ I   P+   N +SID+R +     + AIKG ++DG+DF++ A+ KGA
Sbjct: 5   TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L +++         L+      V++   AL +LA   R +    +I +TGS GKT+TK+
Sbjct: 65  ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  ALS   K +   G++NN IG+PL +  +    D  + E+GMS L EI+ L+ + RP
Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+ N    E I  AK EI     K   + +N+DD +   +    + L  
Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRLIK 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +I      KN D +        +    ++       +      G H   N L+ +    
Sbjct: 245 ASI---SDDKNIDLKGESLVLKEDSCEFKLN----ESKFYIPMPGKHNISNALLAIACAR 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +          F   E    R     N+G  T+I+++YNA+P SMKAAI V+  + 
Sbjct: 298 ELGVEDQLI---NKGFLNIEATSMRLDIEKNKG-ITIINDTYNASPDSMKAAIEVMKNLK 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                RRIAV+G M E+GE S  +H ++       ++  +   G 
Sbjct: 354 ---GKRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGE 395


>gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 528

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 205/479 (42%), Gaps = 38/479 (7%)

Query: 10  LLQAIQGHSIGIVPQG-------FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + + + G   G             V G +  DSR  A    F A  G   DGHDF+  AV
Sbjct: 10  IARTVGGTLSGPPGATQEELAALAVTGPVVFDSRDAAAGALFVAFPGEAADGHDFVQAAV 69

Query: 62  QKGAGLVVVNTDMVASIGSL---SIPVFGVDD--VLGALNKLAVAARLR-SKATIIAITG 115
            KGA  V+   D           S+P   V D  +L AL+ LA A   R  + T+I +TG
Sbjct: 70  DKGAVAVLAAPDDAYRKPWTARGSVPTVTVGDGDLLRALSALATAHLARLPRTTVIGLTG 129

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK+++      +  T A  GS+NN +G P+T+ R   D  + + E+G   +G I
Sbjct: 130 SAGKTTTKDLIGRLTRELGPTVAPKGSFNNELGFPITVLRTDEDTRYLVAEMGARGIGHI 189

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--------TGTIFLNY 227
           + LT +  P I V+  +  AHL  F  +E IA AK E+   + +         G   LN 
Sbjct: 190 KHLTTIAPPRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPDRDGVAILNA 249

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHH 286
           DD+    + A++       +  FG+S +AD +    +  S+  +   +  +       + 
Sbjct: 250 DDARVRGMAARTKG----RVVLFGESPDADVRAEDVRVGSDGRASFTLLYRDGEGPHRYP 305

Query: 287 ----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L        L    +   + LS   P      R     +    T++
Sbjct: 306 VALRLVGEHQVSNALAAAATGLELGLAGEKVAEVLSAAEPDSKW--RMAIGESADGVTVL 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++YNANP SM+AA+  L+ ++    G R  AVLG M E+G+ S   H  +  +    NI
Sbjct: 364 NDAYNANPESMRAALKTLATMARARPGARSWAVLGTMAELGDDSAVEHDAVGRLAVRLNI 423

Query: 402 SHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +     G    A+          +         D    F+++    GDVV+VK+S + G
Sbjct: 424 AQTVAVGAGAAAIHSGASMEGSYNGESVAVPDADAALAFVRAGARPGDVVLVKASRAIG 482


>gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
 gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
          Length = 481

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 131/487 (26%), Positives = 215/487 (44%), Gaps = 37/487 (7%)

Query: 5   WTFHDLLQAIQGH--------SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
               +  + I G+         +     G +  +  DSR +     F  +KG  +DGHD+
Sbjct: 1   MNLEEFCEIIDGNVCYKSVDFKMPCEQDGKMFNVVTDSRDVKKGCIFVCLKGEFHDGHDY 60

Query: 57  ILHAVQKGAGLVVVNTDMV-------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           +  A + GAG+++VN D             +++  V  V   L A+ +LA          
Sbjct: 61  VRQAAEDGAGIIIVNEDKKADVMKAIDDARAMNTSVISVKAPLYAMGELAKWYISYLGVK 120

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            I ITGSVGKTT K+M+   L S   TY   G++N+ IG+PLT   MP D    +FELGM
Sbjct: 121 TIGITGSVGKTTVKDMVASVLPSAMNTYKTKGNFNSLIGLPLTALSMPRDTSLCVFELGM 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              GEI  L+ ++ P +A+IT I  +H+      E I  AK+EI   ++  GT+ L  D+
Sbjct: 181 DAKGEIDRLSEIIAPDVAIITKIGVSHVERLGSRENIFRAKSEIVNHIKPGGTLILGVDE 240

Query: 230 SFFELLKAKSHALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVV 284
              + LK ++       I      +    +  + +   +   E    E    G + + V 
Sbjct: 241 DE-QYLKKENFTGNFNVIEVTAKHYAGVDSNTYCVENVRDDMEGIRFEFSGGGYEKIPVT 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H A N  + +        D+++  + L   +    R +       +G  T ID+
Sbjct: 300 INTHGIHNALNAGLAIACGLQFDIDLESIKEGLKNVNFTAKRLEIKE----KGGITFIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYNA+P SM +A+ VLSQIS   +GR +AVLGDM E+G+ S+ FH  +  ++    I  +
Sbjct: 356 SYNASPESMSSALRVLSQIS---KGRMVAVLGDMNELGKDSEDFHKRIGRLVFDLGIEEL 412

Query: 405 WLSGFHVLALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              G       +    +  +          + E            + +GD V++K+SN+ 
Sbjct: 413 IAVGEKGRGYIEGFSEAAEIEGKKNDVQIVWIEDSKKCRDACFKHISEGDWVLLKASNAL 472

Query: 456 GFYRLIN 462
               ++ 
Sbjct: 473 KLSSILE 479


>gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
          Length = 480

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/486 (25%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L + +            + G ++ DSR I   + F A+ G H DGH F+    ++
Sbjct: 1   MTIDALREIVGLEP--GTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARR 58

Query: 64  GAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109
           G  + VV          D         + +  VDD   AL K+A A   + ++       
Sbjct: 59  GGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSG 118

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + 
Sbjct: 119 KLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   L
Sbjct: 179 EMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAIL 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   K    +    K  S+  +   +       +V 
Sbjct: 239 NADDPRVEAMSGRTAG----RLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKAQVE 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N L    I  +          A ++ H       R           LID+
Sbjct: 295 MQLIGAHHVSNALAAAAIAHVAGMATHEI--AAALHHATPQSEHRMHLVHLADAVDLIDD 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I  +
Sbjct: 353 AYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIPVL 410

Query: 405 WLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G     +     AL      H++         +Q  +   D++++K S+    ++L 
Sbjct: 411 IGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLA 470

Query: 462 NLLLEE 467
             + E 
Sbjct: 471 QSIEER 476


>gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 503

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 198/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  V+
Sbjct: 9   IAHWAGGELHGD--DTMIDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +LS+P   VD+   AL ++A   +      ++A+TGS GKT+ K +L   
Sbjct: 67  VDR----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVARTKGAIYAALPADGVAVINADDAFGMWFEQQLQSQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +A+   R+ +  +  +   +       ++     G H   N L   G+
Sbjct: 243 QGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAQIALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIADGLAQARAVAG---RQIAQTLPNGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGA 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ LVD                                       
Sbjct: 416 RV--FATHAELIDALQADLVDATSQRQQVPQHGSGNTQEHAVIHQQQSPSTNALPGVASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            +++K S      R++  LL
Sbjct: 474 TILIKGSRGSAMDRVVTALL 493


>gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 507

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 137/499 (27%), Positives = 219/499 (43%), Gaps = 52/499 (10%)

Query: 5   WTFHDLLQAI---QGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           WT   L  A        IG+  Q         I  D+R I   + F AI G ++DGH+F+
Sbjct: 17  WTPEHLQAATAQLDSRWIGLDAQNKTTLNATRIITDTRKIQAGDTFLAIVGENFDGHNFV 76

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGS 116
             A++KGA  V+V+      I +L++P   VDD   A  ++A   R +  K  +IA+TGS
Sbjct: 77  TAAIEKGAIAVIVS----QPIEALAVPQLKVDDTRLAFGQIAAYRRQQHAKLKVIALTGS 132

Query: 117 VGKTTTKEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            GKTT KEML    + ++         T    G+ NN  GVP+ L  +     + + ELG
Sbjct: 133 SGKTTVKEMLRHIFTQVEAANNAEQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLELG 192

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +H+GEI + T +V+P +A I  I  AHL  F G + IA  KAEI++ L ++ T  + +D
Sbjct: 193 ANHVGEIAYTTAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQSLTESSTAVVPFD 252

Query: 229 DSFFELLKAKSHALGIKTIYSFG------KSKNAD-----FQLRKWKQCSEQSWMEVQLQ 277
           D + + L A +       +  +G       S  AD         + +  + QS  ++   
Sbjct: 253 DDYTQQLTAVAKQH-TPHVIHYGWQHLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFD 311

Query: 278 GKS----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             S    +++     G H   N L             +     L+     +GR  R    
Sbjct: 312 LDSQTSVVDITLPMSGEHNVSNALAAAACAYASGIAPEVIAAGLNQATSSKGRLGRQTL- 370

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   +ID++YNANP SM+AA    + +     G ++ VLGD+ E+G+ S   H  L 
Sbjct: 371 ---GMHHIIDDTYNANPNSMRAA----ADVLAAQAGYKVLVLGDIGELGDASSEEHYKLG 423

Query: 394 EVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDG------D 445
           + ++   I  +  +G   +  +  A  + +   Y  +T   L   +Q+ L          
Sbjct: 424 QAIANKAIDLLLCAGEFAVDTIAGARNQGMQQAYAFDTKAELLPKLQAVLAQNTESQQIC 483

Query: 446 VVVVKSSNSCGFYRLINLL 464
            ++ K S S     LI+ L
Sbjct: 484 TLLFKGSRSTTMETLIDDL 502


>gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
 gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
          Length = 426

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 197/437 (45%), Gaps = 30/437 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  + +DSR I     FFAI     +G+ +I   +++GA LV+ +             V
Sbjct: 19  EILKVVMDSRKIEKDSLFFAI----NNGNKYIDEVLERGATLVIADDYSGDDSR-----V 69

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D + A+  LA   R      +IAITGS GKTTTK+M+   LS   +     G+YNN
Sbjct: 70  IVVEDTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQKYRCKKTEGNYNN 129

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P T+ ++    +  + E+GMS  GEI  L  + +P  A+IT I  +HL      E 
Sbjct: 130 HIGLPFTILQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKTREN 189

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK EI + +     I    DD + + L             + G  KN   ++  +K 
Sbjct: 190 VFKAKGEIIKYVVSENLIIF-GDDYYLKNLSG----------ITVGYEKNCKKRIENFKD 238

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E   +E  L+G + ++  +  G H   N  M + +   L    +   K     +    
Sbjct: 239 TDEG--IEFSLEGNNYKINLN--GKHNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTPM 294

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++      +G    I+++YNA+P SM+ ++    ++  + +  +IAVLGDM E+G+  
Sbjct: 295 RFQKIV----KGETLYINDAYNASPISMRYSLETFDKL--YNDRTKIAVLGDMLELGDKE 348

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             FH ++ +      +  +++ G  +    + + ++  +  S   + +   I+ S+    
Sbjct: 349 IEFHREIIKKALDIKVDRIYIYGERMQKAYELMKQNKKIITSLDKNFIRESIKESIKGSK 408

Query: 446 VVVVKSSNSCGFYRLIN 462
            +++K S       +I 
Sbjct: 409 AILLKGSRGMKMEEIIE 425


>gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 469

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 221/481 (45%), Gaps = 27/481 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T  ++ +A+ G  +       Q  V+G+   DSR IA    F A  G   DGH F
Sbjct: 1   MIAL-TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIA 112
              AV+ GA L++V  ++      L +P   V DV+ AL +LA       R      ++A
Sbjct: 60  APAAVEAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGDLRMVA 114

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKTTTK +L   LS+  +T + + S+NN +G PLT+ ++     F + E+G S L
Sbjct: 115 VTGSNGKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVTRTTRFLVAEMGASGL 174

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P + ++ T+  AH   F GIE     K E+ + L    T  LN DD   
Sbjct: 175 GEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRV 234

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYH 291
             +  K+ A     +  FG+   A  +       +  +   + L   S   V    +G H
Sbjct: 235 SSMSDKTEA----PVLWFGRDARAAVRATDIVASAAGTTFTLHLPDGSERPVSFRVLGEH 290

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        L  D D  + AL      E         L     T+I+++YNA+P 
Sbjct: 291 HVTNALAAAAGAWALGVDGDAIVSALQTVQRAERWRMEV---LGGNGVTIINDAYNASPD 347

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM AA+  L+QI    E R +AVLG+M E+GE S+  H  +  +    NI  + + G   
Sbjct: 348 SMAAALRTLAQIRG-PEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPA 406

Query: 412 LALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             L  +A+ +        ++E        +   L DGD+V+VKSSNS G   L + L E+
Sbjct: 407 RRLHLEAIAQGSWDGESIFAEDAAEAREILDRILRDGDLVLVKSSNSAGLRFLGDELGEK 466

Query: 468 F 468
           +
Sbjct: 467 Y 467


>gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
 gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
          Length = 430

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 199/439 (45%), Gaps = 24/439 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG++ DSR       F A+KG  ++G+ F   ++ +G    VV+    AS  +  I    
Sbjct: 14  NGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEPQYASPENPYI--LL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R +    ++ +TG+ GKTTTKE++   L          G++NNHI
Sbjct: 72  VENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQGNFNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + +  + E+G +H GEI+ L H+  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLKPEHEVAVIEMGANHPGEIKTLVHIAEPDCGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L + G  TIF+  ++     +    +         +G++   D        
Sbjct: 192 RTKGELYDYLREKGNATIFIQNENPHLNKIAEGLNC------VRYGQTSGLDVSGT-VLS 244

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           CS    +     G S EV  H IG +   N L  + I      +      ALS + P+  
Sbjct: 245 CSPFLHLGWTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFGVEDTQICHALSSYVPQNN 304

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   N    TLI ++YNANP SM AA+    Q+       ++A+LGDM E+GE S
Sbjct: 305 RSQLVQTESN----TLIVDAYNANPTSMMAALVNFRQMEAEH---KVAILGDMKELGEGS 357

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H  + + L+      V L G     L  +        + E +  +   + +  V   
Sbjct: 358 REEHQKVVDFLNECQFERVILVGPEFAGLSASFE------HYENVKEVEAMLAAHPVQHC 411

Query: 446 VVVVKSSNSCGFYRLINLL 464
            V++K SNS     L   L
Sbjct: 412 CVLIKGSNSMKLSELPACL 430


>gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915]
          Length = 447

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 205/467 (43%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  ++  A+ G   G           +D R   P   F A  G H DGHDF   A
Sbjct: 1   MIAM-SVGEIAAAVGGLVAGDRAVTVTAAAVLDGREARPGGLFVAFDGEHVDGHDFAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            Q GA  V+ +   V       +P   VDDV  AL  LA     RLR+  T+IA+TGS G
Sbjct: 60  GQAGAVAVLGSRPTV-------LPTVVVDDVQAALQALAAHVLARLRAGLTVIAVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+ L   L+S+  T A + + NN +GVPLT+ R   +  F + E+G  H G+I  L
Sbjct: 113 KTSTKDQLGAVLASVAPTIATVANRNNELGVPLTVLRAGPETRFLVLEMGARHTGDIAML 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T+L    +AV+  +  AHL  F   E I  AK E+  GL   GT  LN DD    L+++ 
Sbjct: 173 TNLYPLDVAVVLNVGTAHLGEFGSREAIGRAKGELVRGLVPGGTAVLNADDPRVALMRS- 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              L    + +FG + +AD ++R             +     S+ V    +G H A N  
Sbjct: 232 ---LSDGPVLTFGYADHADVRVRDLTLDRFGRPSFTLCTADASVGVTLPFVGGHQAGNAS 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       +D A    +V         R          TL+++SYNA+P S +AA+
Sbjct: 289 AATAAALAAGVSLDVAA---AVLGTASLSKWRMELRHLTSGVTLLNDSYNASPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L  +      RRIAVLG+M E+G+ S++ H  + E  +      V   G  V  L D 
Sbjct: 346 DALLAV---EGARRIAVLGEMRELGQASEAEHRAVGEYAAAR-ADMVIAIGETVRPLADG 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        D    ++  +L  GDVV+VK+S       +   +
Sbjct: 402 A--GDRAVVLADNDAAVKWLHGNLAAGDVVLVKASRGARLDEVAAAI 446


>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
          Length = 464

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 196/463 (42%), Gaps = 24/463 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  ++ +A+ G             +++DSR++AP + F A+ G   DGHDF+  A   G
Sbjct: 4   MSLAEVAEAVGGRLTPDAAGTVPGKVTVDSRAVAPGDLFVAVPGERVDGHDFLTAAAAAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121
           A   +            ++P   VD+ + AL +LA A   R        I ITGS GKT+
Sbjct: 64  AVAALTTR------PDGALPCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSSGKTS 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++L   L++   T +  GSYNN IG+PLT+     D  F + E+G    G I  L  +
Sbjct: 118 TKDLLGQVLATAGATVSPPGSYNNDIGLPLTVLDADEDTRFLVLEMGSRGRGHIARLCRV 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP + V+  +  AHL  F   + IA AK E+ E L   GT  LN DD     +  ++ A
Sbjct: 178 ARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEALPAEGTAVLNADDPRVIGMAPRTRA 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                + + G+S  AD +           +   +   G+   V    +G H   N L   
Sbjct: 238 ----RVVTTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANALSAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G         D    ALS   P+     R          T+++++YNANP SM+AA+   
Sbjct: 294 GAALAAGMAPDAVAAALSAAEPRSRW--RMEVTRRDDGVTVVNDAYNANPESMRAAL--- 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416
           + ++     RR+AVLG M E+G  +   H  L        +  V   G   + + D    
Sbjct: 349 AALAGLPARRRVAVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGIADGALA 408

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                                +   LV GDVV+VK+S S G  
Sbjct: 409 AGAREGEGAVRVPDRAAARELLTEVLVPGDVVLVKASRSYGLE 451


>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 438

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 209/456 (45%), Gaps = 40/456 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLS 82
           +  +  I +DSR       F  I G H DGHDFI  AV++GA  V+ + D          
Sbjct: 11  ERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKKYPE 70

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  + V D   AL ++    + R +  +I +TGS GKTT + ML +ALSS ++ +   G+
Sbjct: 71  VRFWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVFQTAGN 130

Query: 143 YNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            N+ +GVP+TL ++     +  + ELGMS  GE+  +  + R  +A+IT I  AH+ N  
Sbjct: 131 ANSQLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENLK 190

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTIYSFGKSKNADFQL 260
             E I   K  I +G      ++LN +D     L + + H LGI                
Sbjct: 191 TKENILLEKLHILDGAADGAALYLNGEDPLLASLTEERIHDLGI---------------- 234

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 S    +E+       E+     G+HM QN    L +   L    +  ++AL  F
Sbjct: 235 ------SLGKRVELHFYRAEEEIPLSAAGHHMQQNAAAALAVSLDLGLQREGVLRALRGF 288

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GRG++       G   ++D+SYNA+P ++KA++ VLS+       R+IA+L DM E
Sbjct: 289 SGLKGRGEKLLSRSGIG---ILDDSYNASPDALKASLLVLSK---EKGRRKIALLSDMLE 342

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---------VHYSETMD 431
           +GE S+  H D    LS   I  V L G   L +   + R            V +    +
Sbjct: 343 LGERSEELHEDCGAFLSSLPIDRVLLYGEKSLGILRGIRREEKRRGDGRQIPVSHFSNAE 402

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            L+  +      GD+V+ K S+S G  RL+    EE
Sbjct: 403 ELYRELLREAAPGDLVLFKGSHSMGLSRLVERFREE 438


>gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 474

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 130/485 (26%), Positives = 203/485 (41%), Gaps = 35/485 (7%)

Query: 4   LWTFHDLLQA------IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           ++T +D++Q+      IQ  S    P         DSR I P + F A KG + DGH FI
Sbjct: 1   MFTLNDIVQSNTDQIHIQ-SSTTPDPALVFRSAHHDSRLITPGDLFIARKGTNSDGHHFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGS 116
             A + GA   + +T               V DVL AL+  A A   R K T+ I ITGS
Sbjct: 60  PAAARAGALAALCSTPANDVPPDFL--QIIVPDVLTALHATARARTQRQKDTVRIGITGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ +   LS    T     SYN+ +G P+TL  +     + + E+G   +GE+ 
Sbjct: 118 NGKTSTKDAVAAVLSHKAPTLKTYASYNHELGYPITLLHLEPQHRYAVLEMGAQCVGELT 177

Query: 177 FLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +L + +  PH ++ITT+  AHL  F   E +A AK+E+ + L   G   LNYDD     +
Sbjct: 178 WLCNSIASPHWSIITTVGAAHLEYFGTQERVAIAKSELVQVLTPDGFAILNYDDELVRAM 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            AK+ A     I  +G  + A  +               +    +   V     G H   
Sbjct: 238 AAKTQA----RILYYGTGEGATVRASNIGGDTLFGHSFTLHYHDQQQPVQLRLPGEHGVT 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
             L            +D    AL    P  G   R          TLID+SYNAN  S+ 
Sbjct: 294 IALAAAATGCAAEMSLDDIASALEDLSPAPG---RCEIKPGPNNSTLIDDSYNANRQSII 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
           A  S +   S    G+R A+LGD+ ++G  +++ H      L+   + ++   G      
Sbjct: 351 AITSAMHNTSQAPNGKRWAILGDIFQLGTYARAEHSTCGSSLAGL-VDYLIAIGDQARFY 409

Query: 413 ---ALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              A+   +P     ++S  ++               ++  +  GD+V++K S       
Sbjct: 410 VEGAIASGMPEKNAYYFSADVNNSAELEAAKRAAADLLKHEVRPGDLVLLKGSRGMRMET 469

Query: 460 LINLL 464
           ++ +L
Sbjct: 470 MLAML 474


>gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
 gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
          Length = 503

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 197/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  V+
Sbjct: 9   IAHWAGGELHGD--DTMIDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +LS+P   VD+   AL ++A   +      ++A+TGS GKT+ K +L   
Sbjct: 67  VDR----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVARTKGAIYAALPADGVAVINADDAFGMWFEQQLQSQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +A+   R+ +  +  +   +        +     G H   N L   G+
Sbjct: 243 QGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAPIALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIADGLAQARAVAG---RQIAQTLPNGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAHAFGEGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ LVD                                       
Sbjct: 416 RV--FATHAELIDALQADLVDATSQQQQVPQHGSGNTQEHAVIHQQQSPSTNALPGVASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            +++K S      R++  LL
Sbjct: 474 TILIKGSRGSAMDRVVTALL 493


>gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
          Length = 506

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/498 (27%), Positives = 207/498 (41%), Gaps = 40/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + QA+ G       P   V+G +  DSR I     F A+ G   DGHD   
Sbjct: 1   MIPM-TLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHAA 59

Query: 59  HAVQ---------KGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARL 104
            AV          +  G+  +  + + + G+ ++ +    D     VL AL KLA A+  
Sbjct: 60  GAVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHDRDGSGAAVLAALGKLARASVD 119

Query: 105 RSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           R       T++ +TGS GKT+TK++L   LS +    A  GS+NN +G P T  R   D 
Sbjct: 120 RLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADADT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-- 218
            F + E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+   L   
Sbjct: 180 RFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPSA 239

Query: 219 -KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQL 276
              G   LN DD     +  ++ A     +   G S NAD +    +   + ++   +  
Sbjct: 240 ADGGVAVLNADDPLVAAMADRTEA----RVVMVGLSGNADVRATDVRLDDQARASFTLTC 295

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              ++ V     G H   N L    +     A +D    AL    P     +R       
Sbjct: 296 AAGAVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSA--RRMEVRDRS 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLA 393
              T++++SYNANP SM+AAI  L  ++  G G   R  AVLG+M E+G  S   H  + 
Sbjct: 354 DGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVEHDAIG 413

Query: 394 EVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                 +++ + L G    V A+               +          ++  L  GD+V
Sbjct: 414 RFAVRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASAIALLEQELRAGDLV 473

Query: 448 VVKSSNSCGFYRLINLLL 465
           +VK+S S G + + + +L
Sbjct: 474 LVKASQSIGLWEVADAVL 491


>gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 471

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 209/482 (43%), Gaps = 38/482 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     + Q +   ++         GIS DSR++ P + + A++G  +DGH FI  A+  
Sbjct: 1   MLDLRTVYQWLPNVTMFGSGAERFTGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+           + +P   V D   AL  LA   R R +  +IA+TGS GKTT K
Sbjct: 61  GAAAVLTEVF----PERVRVPTLWVPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAK 116

Query: 124 EMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+   L +    +  +A  G++NN IGVPLTL R+      G+ E+GM+H GEI  L  
Sbjct: 117 EMIAAILVAHLGAEAAFATRGNFNNDIGVPLTLLRLSDAHRMGVVEMGMNHPGEIAGLAA 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A++      H     G E  A     +F  L  +G      DD    + +A + 
Sbjct: 177 MTQPSVALVLNAQREHQEFMDGPEATARENGTVFGALAASGVAVFPGDDPCTPIWQALAQ 236

Query: 241 ALGIKTIYSFGKSKN-----ADFQLR----------KWKQCSEQSWMEVQLQGKSMEVVH 285
               + + +FG   +     AD Q               + +       +L    +++  
Sbjct: 237 G---QRVLNFGLVADEAALEADVQSTPDAGTPYLSVAAARDARPEHFRARLGEALVDIRL 293

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H  +N L        L   V+  ++ L+ F P  GR +R   A       LID++
Sbjct: 294 NIAGRHNVRNALAAAACTLALGVPVEAIVRGLAAFEPVSGRLRRTHTAQ---GVPLIDDT 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM+AAI VL+         R+ V+GDM E G  +++FH ++ E      I  VW
Sbjct: 351 YNANPDSMRAAIDVLADQPAP----RLMVMGDMGETGAQAEAFHREVGEYAVSRAIEQVW 406

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLL 464
             G  + A   A      V Y ET++ L          G   ++VK S      R++   
Sbjct: 407 AVGKDMKAAAQA----GGVQYWETVEALLAE-HPQAPAGIASILVKGSRFMKMERVVRAW 461

Query: 465 LE 466
            E
Sbjct: 462 AE 463


>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/468 (25%), Positives = 204/468 (43%), Gaps = 14/468 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T H++  A             V  I  DSR++ P + F  + G  +DGH+F+  A  KGA
Sbjct: 4   TLHEIANATGAVGDFDPQTPPVCRIQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++    +     S  IPV  V D L AL +LA   R     T++A+TGS GKT+TKE 
Sbjct: 64  SAIIAQQPLF--DLSAGIPVLLVQDTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKEC 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    +      ++NN +GVPL +     + +F + E G+S  GE+  L  ++ P 
Sbjct: 122 IAGVLGRRGQAAKSYKNWNNRLGVPLNILSFSGEEEFWVLEAGISEPGEMAALASIIAPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +AP HL     +  +   K  + + L   GT+ L+ D   +  L  ++ +    
Sbjct: 182 VAVVTNVAPVHLEGLVDVPTVVEEKLHLCDHLTHNGTLVLSVD---YPELSQRAASAVCP 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y   +++ A +     +        ++   G   E        +MA+N+     +   
Sbjct: 239 KTYFSVQAEKAPYWCEPIQDPEVYGRFQLSCDGVRTEFDLPWAADYMAENLAAAACVGHR 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +V+  +  L      E RG+            +ID++YNANP SM+ AI   ++ + 
Sbjct: 299 LGLEVEEIVAGLQTAELPEHRGQLLTLP----GGIVIDDAYNANPHSMQRAIRAAARRAG 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSI 422
                 + VLG+M E+G  +++ H  L  V+     + V+  G H  A+      +   +
Sbjct: 355 ERP--LVLVLGEMAELGPDAEAAHTQLGRVVGAVAPTAVYYQGEHADAVDCGAREVDPDL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            +    +   L     +      +V+VK S S    + I +L +EF A
Sbjct: 413 RIQRVRSPQDLENAWGAFAKRSPLVLVKGSRSGRMEQYIQVLQKEFGA 460


>gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
 gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
          Length = 483

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/486 (25%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L + +            + G ++ DSR I   + F A+ G H DGH F+    ++
Sbjct: 4   MTIDALREIVGLEP--GTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARR 61

Query: 64  GAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109
           G  + VV          D         + +  VDD   AL K+A A   + ++       
Sbjct: 62  GGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSG 121

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + 
Sbjct: 122 KLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   L
Sbjct: 182 EMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAIL 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   K    +    K  S+  +   +       +V 
Sbjct: 242 NADDPRVEAMSGRTAG----RLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKAQVE 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N L    I  +          A ++ H       R           LID+
Sbjct: 298 MQLIGAHHVSNALAAAAIAHVAGMATHEI--AAALHHATPQSEHRMHLVHLADAVDLIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I  +
Sbjct: 356 AYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIPVL 413

Query: 405 WLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G     +     AL      H++         +Q  +   D++++K S+    ++L 
Sbjct: 414 IGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLA 473

Query: 462 NLLLEE 467
             + E 
Sbjct: 474 QSIEER 479


>gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
 gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
          Length = 440

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 221/464 (47%), Gaps = 27/464 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++L+ ++G  + +      +    IDSR       F  +KG   DGHDFI  A++K
Sbjct: 1   MKIKEILEIVKGRPLKLRDADKEIKRFIIDSRKAQKDSFFVPLKGSKADGHDFIDDALKK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+   + + +     G        VDD L AL ++ +  R + K   + ITG+ GKTTTK
Sbjct: 61  GSSGYLTSIETDYKNG------ILVDDTLKALTEIGIFKRKKLK-KAVGITGTSGKTTTK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   LS I + YA  G+YNN IG+PLTL+ +P + + G+FELG S  G+I  L  + +
Sbjct: 114 EILRFLLSDIFRVYATEGNYNNEIGLPLTLSNIPENTEVGVFELGASKRGDISKLVSISK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+T++   H+  F   E +   K EIF+G        L  D           +   
Sbjct: 174 PEVRVLTSVGHGHIEGFGSFEGVVQGKGEIFDG---GEISVLPED-------LKIYYMDR 223

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +K   +FG S  AD ++ +     E +   V  +   + +        +  N+   L ++
Sbjct: 224 LKKYVTFGISDYADIKISEINITPEGTAGTVSYKNDKIRITVPVYSRALFNNIAAALSVL 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +   + + L  F   EGRGK  R    +G  T+ID+SYNANP S+K AI  LS I
Sbjct: 284 YALDINPVRSAEKLRDFSLPEGRGKVLR----KGSLTVIDDSYNANPLSVKNAIETLSGI 339

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  R+ +LGDM E+G+LS+  HI + + +   +I  + L G         +    +
Sbjct: 340 PSF----RVLILGDMLELGDLSEQMHIKVGKEILSSDIDLILLYGRETYHTYTVIKDKKN 395

Query: 424 VHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLE 466
            ++ +  + L+  +  S+ D + V++VK S       +I  +L+
Sbjct: 396 SYHFDDKEKLYRKLMDSIKDKECVLLVKGSRGMRMEDIIEKVLQ 439


>gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
 gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
          Length = 466

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 206/475 (43%), Gaps = 32/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +F +   A+QG  +         + +SIDSR++     F  ++G   DGH +I  
Sbjct: 1   MKNLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYIRS 60

Query: 60  AVQKGAGLVVVNTDM----------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           A++KGA L   +                    S     V + L AL   A     +    
Sbjct: 61  ALEKGAVLFFADEKFLSVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFPNL 120

Query: 110 I-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           I + ITGS GKTTTKE+    LS         G+ N+  G+PL++  +  + + GIFELG
Sbjct: 121 IKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSETGLPLSVFEVRDEHEVGIFELG 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           M+  GE++ +T ++ P   +IT I  AH+      + IA  K +IF   +K    F+  D
Sbjct: 181 MNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQIFSFFDKDCMGFVP-D 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             F + L+A    + +  +  +  +      L+  K+   +      +  K  E+     
Sbjct: 240 CPFTDFLQA----VPLGKVVCYENT-----TLKNIKKIESKGMYGSTIFYKDEEICFPLA 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N    + +   L   V    + L    P  G     R    QG    + + YNA
Sbjct: 291 GNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFG-----RSQFMQGDVDCLFDCYNA 345

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM AA++V S+     +G++ AVLG M E+G+ S + H  +    +  +I  ++L G
Sbjct: 346 NPDSMSAALAVFSETK--VQGKKAAVLGSMLELGKESAAAHKKICAQAAASDIDFIYLFG 403

Query: 409 FHV-LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +  + K+       V Y +   MD L   +  +L  GD V++K+S      RL
Sbjct: 404 KEIGDSGKNINWNGKTVFYFDESEMDALGKALDENLHRGDFVLLKASRGLALERL 458


>gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
 gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
          Length = 504

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/495 (25%), Positives = 201/495 (40%), Gaps = 40/495 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G    +  P   V G +  DSR +     F A+ G H DGHD   
Sbjct: 1   MIPM-TLARIAEIVGGELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK------------------LAV 100
            AV+ G   V+    +      ++     V     AL                     +V
Sbjct: 60  SAVEAGVVAVLAARPVGVPAIVVTPTPSDVPSKAMALEHDTDGSGAAVLAALAKLARASV 119

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                   T++ +TGS GKT+TK++L   L  +    A  GS+NN +G P T  R   D 
Sbjct: 120 DGLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTALRADADT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-- 218
            F + E+     G I  L ++  P I V+  +  AHL  F   + IA+AK E+ E L   
Sbjct: 180 GFLVLEMSARGRGHIASLANIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGELAESLPSA 239

Query: 219 -KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQL 276
            + G   LN DD     +  ++ A     +   G+S++A  +        + ++   +  
Sbjct: 240 DEGGVAILNADDPLVAAMAPRTSA----RVVLVGRSESAHVRATDIVLDEKARARFTLTA 295

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S+ V     G H   N L    +     AD++   +ALS         +R       
Sbjct: 296 PTGSVAVELAVHGEHQVGNALAAAAVALECGADLEQIAQALSGAAAVSA--RRMDVRDRP 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLA 393
              T++++SYNANP SM+AA+  L  ++  G G   R  AVLG+M E+G  S   H  + 
Sbjct: 354 DGVTVVNDSYNANPDSMRAALKALVSMARSGRGAARRSWAVLGEMAELGPESVVEHDAIG 413

Query: 394 EVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                 ++S + + G      A+                   + G    +++ L  GD+V
Sbjct: 414 RFAVRLDVSRLIIVGTGRPARAMHQGAVMEGSWGEESILVPDIAGAVALLEAELAPGDLV 473

Query: 448 VVKSSNSCGFYRLIN 462
           +VK+S S G + + +
Sbjct: 474 LVKASQSIGLWEVAD 488


>gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
 gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
          Length = 496

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 130/493 (26%), Positives = 210/493 (42%), Gaps = 35/493 (7%)

Query: 3   PLWTFHDLLQAIQ-GHSIGI------VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           P++   D+L  +     +        V +  V  +  DSR++   + F A++G  +DG+ 
Sbjct: 7   PMFGLRDILPWLGNAQLLADEAGGPAVDEVRVRRVHTDSRTLREGDLFVALRGDRFDGNA 66

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATII 111
           F+  A   GA   + +    A++    +P   V D   AL +LA   R       +  +I
Sbjct: 67  FLAQARAAGAVAALCS--DAAALRQAQLPGIVVSDTRRALGQLAQGWRQHIARGHRLPLI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           A+TGS GKTT  +M    L + K     A  G++NN IGVPLTL R+    +  + ELGM
Sbjct: 125 AVTGSNGKTTVTQMTAAILRAHKPQTMLATEGNFNNDIGVPLTLLRLRPRHELAVVELGM 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI  L  + RP +A++      H      IE +A     +   L   G      DD
Sbjct: 185 NHPGEIAELAAITRPTVALVNNAQREHQEFMHSIEAVARENGAVISALGADGVAVFPSDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGK-SKNADFQLRK-------WKQCSEQSWMEVQ--LQGK 279
           ++  +    +   G ++  +F      AD            W+   +    EVQ      
Sbjct: 245 AYTGIWHELA---GARSRLTFSVNDAAADLHCADPALAAPQWQVDDKGGRWEVQARTPAG 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++       G H  +N L            ++   + L  F P  GR +  R  +     
Sbjct: 302 ALRFTLRVAGLHNVKNALAAAACALAAGVPLNAIARGLESFEPVSGRSRALRLPVAGREL 361

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TLID++YNANP S++AAI VL+ +     G R+ VLGDM E+G+    FH ++       
Sbjct: 362 TLIDDTYNANPDSVRAAIDVLASLP----GPRLLVLGDMGEVGQEGPRFHAEVGTYARAR 417

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  +   G    A   A    +  H+ + +D L L + +SL     V+VK S      R
Sbjct: 418 GIELLHTLGEMSEATTQAFTGGM--HHGQDIDALNLVVLASLPQVHSVLVKGSRFMKMER 475

Query: 460 LINLLLEEFPAIQ 472
           ++  +   + A++
Sbjct: 476 VVQAIQA-YAAME 487


>gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
 gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
          Length = 457

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 199/458 (43%), Gaps = 16/458 (3%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +GA   +V+  
Sbjct: 2   IPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR- 60

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++ 
Sbjct: 61  ---SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA 117

Query: 134 KKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              +A     G++NN +G+PLTL R+       + ELGM+H GE   L  +  P +A++ 
Sbjct: 118 VGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVN 177

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
                H    + +E +A   A +   L   G      DD++  + +  +       I  F
Sbjct: 178 NAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDF 234

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A           + S + +   G  ++V  + +G H A+N L            +
Sbjct: 235 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 294

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 L  F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S     
Sbjct: 295 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 351

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            R+ V+G+M E+G+   +FH ++        I  ++  G       DA       H+ + 
Sbjct: 352 -RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDA 409

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +   + ++      ++VK S      R+++ L  E
Sbjct: 410 AALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 447


>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 378

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 186/388 (47%), Gaps = 14/388 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLEQIKHWIPCEIDEQYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G          +   +  P+  V+D L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFSEKGTELN-EDIEGPIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL++ GT   + D+    LLK+    L   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFIYDGDEP---LLKSHLEQLNKA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G   +           +E     +             +G H  +N  + + I   
Sbjct: 241 RLISVGLGNSNTLVCHVDDIETEGIAFTIN---DKESFTLPILGTHNMKNATIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T    ++       R +R++   N    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLSYETIKDNINHVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             EGR+I +L D+ E+GE SQS H ++ 
Sbjct: 353 --EGRKILILADVLELGENSQSMHEEVG 378


>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
 gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
          Length = 499

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 144/498 (28%), Positives = 221/498 (44%), Gaps = 43/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +   GI   G        DSR +     F AI G   DGHDF
Sbjct: 7   MMPM-GLAEIEQAVHGRLVTAEGISSNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 65

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TII 111
           +     +GA   +V+      +    +P   VDD + AL +LA     R +A     T+I
Sbjct: 66  VSKVGAQGAVAALVD----HEVADAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 122 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 182 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 241

Query: 232 FELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCS-EQSWMEVQ-LQGKSMEVVH 285
              +   +       +  FG    ++ +        +    +    E++  +G+  +V  
Sbjct: 242 VAAMSGIAPG----EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNL 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
              G H   N L    +V  L   +D     L+                  +  FTLID+
Sbjct: 298 GICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDD 357

Query: 345 SYNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           S+NANP SMKA +  L +   + E +  RIAVLG M E+G   ++ H  +        ++
Sbjct: 358 SFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVN 417

Query: 403 HVWLSG----FHVLALKDALPRSIH-----------VHYSETMDGLFLFIQSSLVDGDVV 447
            +   G      + AL +A+ +               H  +  D L   + +    G VV
Sbjct: 418 ALIAVGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATE-HAGTVV 476

Query: 448 VVKSSNSCGFYRLINLLL 465
           ++K S++ G   L     
Sbjct: 477 LLKGSHASGLSALAERWQ 494


>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
 gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
          Length = 443

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 204/451 (45%), Gaps = 37/451 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+S D+R+IA    +FA+KG  ++G+ F   A++KGA   V++     +   +      
Sbjct: 12  TGVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVIDEVAYQTSDKM----IL 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V DVL  L +LA   R   K  +I ITGS GKTTTKE++   LS      A  G+ NN+I
Sbjct: 68  VSDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQQLNVVATQGNLNNNI 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  + D  I E+G +H GEI FL ++ +P    IT+I  AHL  F   E + 
Sbjct: 128 GVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSFEGVI 187

Query: 208 SAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L+    TI  N D+   E L A          YSFG  K  +  ++     
Sbjct: 188 QTKGELYDYLKAHQKTIIANADNPITEALLADYDND-----YSFGVGKGVNVAVQCVGTQ 242

Query: 267 SEQSWME------------VQLQGKSMEVVH---HGIGYHMAQNMLMTLGIVSILTADVD 311
                 E            V ++G +        H +G +   N+   +          +
Sbjct: 243 PVTIQFEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTNIAAAVAFGKFFKLSNE 302

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + +  + P+  R +  +     G  T++ ++YNANP+SM AAI  L  +S   E ++
Sbjct: 303 AIKRGIEAYIPQNNRSQLMQW----GSNTVLLDAYNANPSSMAAAIDNLLTMS--DEKKK 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           + +LGDM E+G  +   H  + + L  Y    V+L G +    +   P+       ET +
Sbjct: 357 VLILGDMFELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQ------YETFE 410

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                  +   +  ++++K S      RLI 
Sbjct: 411 AFKEVFPTLSFNNCLLLIKGSRGMALERLIQ 441


>gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 432

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 201/441 (45%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQR--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +  P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L K    T+F+++D+++   +           +  +G     D  +   +   
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAE------GLNLIPYGTED--DLYV-NGRITG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      GKS +V    IG +   N L  + I      +     +ALS + P+
Sbjct: 245 NSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALSGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  +   N    TLI ++YNANP SM AA+     +       ++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH---KMLILGDMRELGA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  +A+ L       VWL G    A + +            +  +   +++    
Sbjct: 358 ESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      +++ L
Sbjct: 412 GYTILIKGSNGIKLCSVVDYL 432


>gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 457

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 221/472 (46%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P ++ H++   +    IG+     ++ I+I+S  I  Q  F A+ G  +DGHDF   A
Sbjct: 1   MIP-FSLHEIAPVLNAKYIGM--DLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++VN  ++     L +P   V D   AL  LA   R +  + +IAITGS GKT
Sbjct: 58  IAAGAQALLVNHHIL-----LDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM T  L     T A  G++NN IGVP+TL R+    +F I ELG S  GE+  L+ 
Sbjct: 113 SVKEMTTSILKECGHTIATQGNFNNMIGVPITLLRLTKKNNFAIIELGTSSPGELVQLSK 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V  ++A++  + PAHLS F  + +I   K +IF  L+  GT  +N D     L +    
Sbjct: 173 IVAANVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGIINADSHALSLWR---K 229

Query: 241 ALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            L  K+++ F    N   DF          +    +     +  VV   +G H   N L 
Sbjct: 230 PLKGKSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLSMLGTHNVANALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A++   +  L       G   R    +      L+D++YN+N  SM +AI 
Sbjct: 290 ASALAFSVGANLSEVVYGLENIKTLPG---RLFPIILGEGKLLLDDTYNSNVGSMISAIH 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           VL+ +     G RI V+ DM E+G+  S  +H  + ++++  NI+ +   G     +   
Sbjct: 347 VLTTMP----GYRILVVSDMLELGKYKSIKYHCYIGKLIATTNINKILTIGSVSCCISKI 402

Query: 418 LPRSIHVHYSETMDGLFLFIQSSL-VDGDV-VVVKSSNSCGFYRLINLLLEE 467
             +  H       + L ++I+  L +   + V+VK S      ++IN + +E
Sbjct: 403 CGKGKHFR---NKNKLIIYIKQMLSIHNSISVLVKGSRGFKMEQIINAIRDE 451


>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 447

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 140/467 (29%), Positives = 207/467 (44%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G           +DSR       F A  G H DGH +   A
Sbjct: 1   MIPL-SVGEIAAVVGGTVSGDGSVTVTAPAVLDSRRAQQGSLFLAFAGEHVDGHAYAEQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            Q GA  V+ +           +P    +D   AL  LAV    RLR + T+  +TGS G
Sbjct: 60  GQAGAAAVLGSRPTP-------LPTVVAEDTQAALQALAVHVVGRLRDRLTVFGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS  +T A  GS+NN +GVPLT+ R      F   E+G  HLG+I  L
Sbjct: 113 KTSTKDLLAAVLSSAGQTIATFGSFNNELGVPLTMLRTEATTRFLALEMGARHLGDISEL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV P IAV+  +  AHL  F   E IA AK E+ +GL   GT  LN DD     +++ 
Sbjct: 173 TGLVAPDIAVVLNVGQAHLGEFGSREAIAKAKGELVQGLAPGGTAVLNADDPRVAAMRS- 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              L  + + +FG++++AD +               ++    S  V    +G H A N  
Sbjct: 232 ---LTDRPVLTFGRTEHADVRALGLALDRLGRPSFTLRTADASAPVSLPHVGAHQALNAS 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    +    +DTA   L+       R +    A       L+++SYNANP S +AA+
Sbjct: 289 AAVAAGLVAGVPLDTAAAMLATASLSRWRMEPRDLAS---GAILLNDSYNANPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I      R IAVLG+M E+G+ S+ +H  + E  +      V   G   L + + 
Sbjct: 346 DALAAI---EGRRHIAVLGEMLELGDDSEVWHRAVGEYAAAR-ADVVVTVGKAALRIAEG 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                             ++++ L   DVV+VK+S       +   L
Sbjct: 402 A--GDRAVALADNGAAVHWLRNHLAADDVVLVKASRGARLDEVAAAL 446


>gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 509

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 138/513 (26%), Positives = 211/513 (41%), Gaps = 56/513 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+     G   G   P   V G +  DSR +     F A+ G   DGHDF  
Sbjct: 1   MIPL-SIGDIAAITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASI----------GSLSIPVFGVDD-------VLGALNKLAVA 101
            A+++GA  V+    +              G  +      +D       V+GAL+ LA  
Sbjct: 60  KAIEQGAVAVLAARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSDLARE 119

Query: 102 ARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
              R        I+ +TGS GKT+TK++L     +  +T A  GS+NN +G+P T  R  
Sbjct: 120 VTSRLAAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCD 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L
Sbjct: 180 EHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEAL 239

Query: 218 EK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCS-EQ 269
                 G   LN DD F   +  ++ A     +  +     ++ +A +     +     +
Sbjct: 240 PAAADGGVAVLNADDPFVSSMAPRTQA----KVVYYSANRPQAADAQYYATDIELDDVAR 295

Query: 270 SWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                   G + M +     G H   N L           +     +ALS          
Sbjct: 296 PSFTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPAVVARALSGHQTSSAH-- 353

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQS 387
           R      +   T+ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  +  
Sbjct: 354 RMDVRTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVE 413

Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV-- 442
            H  L  VLS Y++ ++   G   H +A+ +A     I       ++     +++ L   
Sbjct: 414 AHRILGSVLSKYHVDYLVAVGEGAHTVAMVEAAHAHGIQTELCPDIEAATAAVENILRVA 473

Query: 443 -----------DGDVVVVKSSNSCGFYRLINLL 464
                        DVV+VKSSN+   +R+   L
Sbjct: 474 PAGVEDWSARAAKDVVLVKSSNAQRLWRVAEQL 506


>gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 459

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +DGHDF    
Sbjct: 5   MKPL-DLNFICQALN--LPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFAEDV 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   VV+ +  A +         V D L AL  LA A R      +  ITGS GKT
Sbjct: 62  LAAGAAAAVVSREDCAGLRGA----LQVADTLEALQTLAQAWRENVNPFVFGITGSGGKT 117

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G+ NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 118 TVKEMLAAVLRRRFGEEAVLATAGNLNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 177

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + RP  A++     AH+   F G  +IA AK+EI++GL   G   +  +D+  E+ +
Sbjct: 178 LTRIARPDAALVNNALRAHVGCGFDGTADIARAKSEIYQGLGADGLALIPCEDANAEIFQ 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S A   +   +FG  K      R           ++    ++  V     G H   N 
Sbjct: 238 TASAAHKQQ---TFGVDKGG-VHARNIVLKPLSCAFDLVCGSETASVSLPVPGRHNVHNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +       ++     L  F   +G   R +        TLID++YNANP SMKAA
Sbjct: 294 VAAAALALAAGLTLNEVSDGLKDFSNIKG---RLKVKRGIKGATLIDDTYNANPDSMKAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+ +       R+ V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 351 IDVLAALPAP----RVFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    +    +    D L   +   L +G  V+VK S       + + L ++
Sbjct: 407 ETFGAA--GLWFAAKDPLIQVLTHDLPEGASVLVKGSRFMAMEEVADALEDK 456


>gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
 gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 201/441 (45%), Gaps = 26/441 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G        
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDTR--YIV 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I 
Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191

Query: 208 SAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L   K  TIF++ D+ + + +    H +       +G S++  +       
Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIA------YG-SEDGLYINGHVTG 244

Query: 266 CSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            S     E +   +S   EV    IG +   N L  + I      + +   KAL+ + P+
Sbjct: 245 NSPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM A+IS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAEN---KMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  +A+ L       V L G    A +              +  L   +Q     
Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAATRHPYQS------YPDVTALIAELQREKPC 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN       +  L
Sbjct: 412 GKTILIKGSNGIKLSSTVEYL 432


>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 493

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 143/498 (28%), Positives = 219/498 (43%), Gaps = 43/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +   GI   G        DSR +     F AI G   DGHDF
Sbjct: 1   MMPM-GLAEIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TII 111
           +     +GA   +V+      +    +P   VDD + AL +LA     R +A     T+I
Sbjct: 60  VSKVGAQGAVAALVD----HEVADAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 115

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 116 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 175

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 176 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 235

Query: 232 FELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCS-EQSWMEVQ-LQGKSMEVVH 285
              +   +       +  FG    ++ +        +    +    E++  +G+  +V  
Sbjct: 236 VAAMSGIAPG----EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNL 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
              G H   N L    +   L   +D     L+                  +  FTLID+
Sbjct: 292 GICGMHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           S+NANP SMKA +  L +   + E +  RIAVLG M E+G   ++ H  +        + 
Sbjct: 352 SFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVD 411

Query: 403 HVWLSG----FHVLALKDALPRSIH-----------VHYSETMDGLFLFIQSSLVDGDVV 447
            +   G      + AL +A+ +               H  +  D L   + +    G VV
Sbjct: 412 ALIAVGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATE-HAGTVV 470

Query: 448 VVKSSNSCGFYRLINLLL 465
           ++K S++ G   L     
Sbjct: 471 LLKGSHASGLSALAERWQ 488


>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
 gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 8102]
          Length = 449

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 199/446 (44%), Gaps = 21/446 (4%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           + P   V  I  DSR +     F  + G  +DGH F+      G    VV+ D  A + S
Sbjct: 20  VNPDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVSLDWTAPLPS 79

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +  + VDD L A  +LA+  R +    ++A+TGS GKTTT+E++   L+ +    A  
Sbjct: 80  GLL-HWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQASD 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ NN IGVPLT+     D    + E+GM   GEI  L+    P +AVIT I  AH+   
Sbjct: 139 GNNNNDIGVPLTVLGAGSDHAALVIEMGMRGPGEIARLSRCTEPDVAVITNIGTAHIGRL 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E IA+AK EI   L   G + +   D   E   A   A+    +       + D   
Sbjct: 199 GSREAIATAKCEITAALHPQGVVVIPAGDPLLEQALA---AVWQGRVLRVRLEDDPDITA 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                        + L   S+       G H A+N+L+ L + S L  D  +A +     
Sbjct: 256 DLIGAARND---RLLLDEASIP--LPLDGRHNARNLLLALAVGSHLGVDPASAAQL--QV 308

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +   GR +R +    QG  TL+DE+YNA+P ++ AA      +     GRR AVLG M E
Sbjct: 309 NIPGGRNRRLQ----QGGLTLLDETYNASPEAVLAA----LDLLADQPGRRFAVLGTMLE 360

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           +G+ S   H  +A   +   +  V L   G    A+ + +     +    T +   + + 
Sbjct: 361 LGDRSIELHQQVAARAAALKLDGVVLVDGGDEGQAMANVVSCLDRLALVATPEAAAVPLG 420

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
             L  GDVV++K+S      RLI LL
Sbjct: 421 QWLQAGDVVLLKASRGVALERLIPLL 446


>gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes shahii WAL 8301]
          Length = 417

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 132/437 (30%), Positives = 202/437 (46%), Gaps = 35/437 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA++G  +DG+ F+  A++KGA   V +   VA+       V  VD
Sbjct: 14  ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQRIVL-VD 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R      I+AI+GS GKTTTKE+++  L+   + YA  G+ NNHIGV
Sbjct: 73  DTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M  D +FG+ E+G S  GE+  L  +  P+  ++T I  AHL  F G E +   
Sbjct: 133 PLTLLAMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNIGLAHLEGFGGPEGVRRG 192

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+F+ L    G  F+  DD     + A+  +L  +  YS              +   E
Sbjct: 193 KGELFDFLAANGGHAFVPADDEILTGMAAERDSLADE-YYSASL-------ADGIENHLE 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S+                       N+   + +        +    A++ + P   R +
Sbjct: 245 GSYNRF--------------------NIAAAVAVGRYFDVPDERIRHAIASYVPDNNRSQ 284

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R   + N    TL+ + YNANP+SM+A++            RR+ +LGDM E+G+ S+  
Sbjct: 285 RIGTSRN----TLVADCYNANPSSMRASVGNFLAEPLEERQRRVLILGDMLELGDWSERE 340

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  + E+ +    + + L G       D L     +V    T D L   ++ S V+  +V
Sbjct: 341 HAAIIEMAAQDPEAELLLVGPEFAKAYDGLAEKPANVTLCPTRDDLISLLKVSPVEHSLV 400

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK S+  G  + +  L
Sbjct: 401 LVKGSHGMGLEQALEAL 417


>gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
          Length = 452

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+      AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L      +FG     D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTH---TFGIDSG-DVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +G   R          TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLGLNDVAEGLKGFSNIKG---RLNVKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPAP----RIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
 gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
          Length = 434

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 201/438 (45%), Gaps = 22/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A++KG    +++    A  G         D
Sbjct: 16  VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEKEYAVEGDSR--YILTD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L    +LA   R +    +I ITG+ GKTTTKE+++  LS         G++NN IGV
Sbjct: 74  NTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNVGRAHLLGFGSFEGVKKT 193

Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L E    +FLN  +     +  +     I  + ++G+ ++A+ Q      C+ 
Sbjct: 194 KGELYDFLAENDALVFLNESNPHLVKMVQQ---RNINRVITYGQDEDANIQGE-VLSCAP 249

Query: 269 QSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                 + +G+    EV    IG +   NML  + I      D      AL  + P   R
Sbjct: 250 FLKFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITIGLHFGVDPVQINHALENYCPSNNR 309

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP+SM AA+     ++      ++A+LGDM E+G +S 
Sbjct: 310 SQLTVTENNK----LIVDAYNANPSSMAAALENFKVMAVSP---KMAILGDMRELGNVSD 362

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  +A++L   NI  VWL G            + +      +D +   I+   + G  
Sbjct: 363 AEHQKIADMLKECNIDKVWLVGEEFE------KTNCNFTKFHNVDEVKEAIRQENLSGYY 416

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SN    ++L  LL
Sbjct: 417 ILIKGSNGIKLFQLPELL 434


>gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
          Length = 432

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 197/441 (44%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A+++G+   +V+    A  G+       VD
Sbjct: 16  VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAGNTH--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L KLA   R +    II ITG+ GKTTTKE++   LS         G+ NNHIGV
Sbjct: 74  NCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    D  + E+G SH G+IR L  +  P   +IT +  AHL  F   + +   
Sbjct: 134 PLTLLRLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNVGKAHLEGFGSFDGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L + G  TIF+++D+ + + +           +  +G            +   
Sbjct: 194 KGELYDYLRRRGDSTIFIDHDNPYLKEIAW------GLNMIPYGTEDELYV---NGRITG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +     +G+  EV    IG +   N+L  + I      +     KAL+ + P+
Sbjct: 245 NSPYLTFKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGVEPAKIDKALAEYVPQ 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N     LI ++YNANP SM AAIS    +       ++ +LGDM E+G+
Sbjct: 305 NNRSQLKKTADN----ILIVDAYNANPTSMMAAISNFRNMQAEN---KMLILGDMRELGK 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S   H  + + L      +V L G    A +                 L   +Q     
Sbjct: 358 DSAEEHQKIVDYLEKCGFGNVILVGEQFAATRHGYLT------CPNASALIEALQKDRPA 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      + + L
Sbjct: 412 GKTILIKGSNGIKLGTITDFL 432


>gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/493 (22%), Positives = 190/493 (38%), Gaps = 34/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M+ + T       + G       +    Q  ++ +  DSR I   E F A+ G  +D HD
Sbjct: 1   MSIMTTLAQAQAMLPGSTLVNVLVEAAQQLTLSRVGTDSRQIDRNELFVALVGERFDAHD 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F+  A + G G  ++++          +P   V +    L  LA A R      +  +TG
Sbjct: 61  FLSDAAKAGTGAALISSQDKCPAD---LPAICVSNTRVGLGNLAKAWRANHPIPLALVTG 117

Query: 116 SVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           S GKTT KEM+     +    + T    G+ NN IG+PLTL ++       + ELGM+H 
Sbjct: 118 SNGKTTVKEMIASIFKAAVGEQHTLVTKGNLNNDIGLPLTLLKLRSTDRLAVVELGMNHP 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE   L  + + +IA+I      H    + +  +A   ++    L   G      D  F 
Sbjct: 178 GETAQLAVIAQANIALINNAQREHQEFMATVAAVAEEHSDAIRTLPSDGVAIFPADSEFA 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            + +  +    +           A   +           ++++ +  ++EV  + +G H 
Sbjct: 238 GVWRQAAAGRKVIDFVLSSAQTKASAAVTG--CLLSNGLVQIKSEQGTIEVQLNTLGSHN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L    +       ++   + L  F P  G   R +        TLID+SYNANP S
Sbjct: 296 VRNALAASAVGIAAGVSLEKIKQGLESFSPVNG---RMQAKAIDSSRTLIDDSYNANPDS 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++ AI  L Q           +LGDM E+G     FH ++    +   ++ ++  G    
Sbjct: 353 VRVAIDALKQ----SGNLSWLILGDMGEVGNQGPEFHREVGAYAAEQGVAKLFALGEQCQ 408

Query: 413 ALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDV-------VVVKSSNSCGFY 458
                          + H  +   MD L   ++ +L            ++VK S      
Sbjct: 409 FALQGFNEVNKGGETTSHAKHFADMDSLIAQLRDALRSQSSGSNQHLNILVKGSRFMRME 468

Query: 459 RLINLLLEEFPAI 471
           R++  LLEE    
Sbjct: 469 RVVQALLEEAKTC 481


>gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
 gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
          Length = 431

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 195/442 (44%), Gaps = 29/442 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEGDQR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHI
Sbjct: 72  VDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L K   I F+++D+ +   +           + S+G     D  +   +  
Sbjct: 192 KTKGELYDFLRKKDAITFIHHDNPYLMNISQ------GLNLISYGTED--DLYV-NGRIT 242

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +      G++ +V    IG +   N L  + I      +     KAL+ + P
Sbjct: 243 GNSPYLAFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTP 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G
Sbjct: 303 QNNRSQLKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVPH---KMLILGDMRELG 355

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  + + +   N   VWL G    A + +            +  +   +Q    
Sbjct: 356 ADSPAEHQKIVDYIKESNFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKP 409

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN       +  L
Sbjct: 410 KGYTILIKGSNGIKLSSTVEFL 431


>gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 478

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 206/488 (42%), Gaps = 35/488 (7%)

Query: 4   LWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           ++T  D+LQ  Q          +    P         DSR + P + F AIKG   DGH 
Sbjct: 1   MFTLADILQQSQDAQAQVQLVSTTTPDPVMTFTEAHHDSRQVKPGDLFIAIKGAKVDGHA 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-RLRSKATIIAIT 114
           FI  A Q GA   +    +             V DV+ AL+  A A  R + + T I IT
Sbjct: 61  FIHKAAQAGASAALCTHPVEDVPEGFL--QIVVPDVVAALHATARARTRRQPETTYIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKT+TKE +   L     T   + SYN  IG PLTL R+     + + E+G   +GE
Sbjct: 119 GSNGKTSTKEAIAAVLERHAPTLKTLASYNTEIGYPLTLLRLEPQHRYAVLEMGAQWVGE 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++ L+ +  P  +VIT +  +HL  F   E++  AK+E+ + L   G   LNYDD     
Sbjct: 179 LKMLSGITCPDWSVITNVGASHLGYFGSQEQVVIAKSELVQVLSPDGIALLNYDDPNVRA 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +  K+ A     +  +G+ + AD +  K            +  Q + + V  H  G H  
Sbjct: 239 MNTKTSA----RVIYYGQGEGADVRASKPGGDQLFGRSFVLSYQDQEVPVQLHIPGEHGI 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
              L    +       +D   +AL    P +   +R          TLID+SYNAN  S+
Sbjct: 295 AIALAAAAVGCAAGLPLDVIRQALEDLKPAK---RRGEIKPGPNGSTLIDDSYNANRQSI 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
            A    +   +    G+R AVLGD+ E+G+ ++  H      L+   + ++   G     
Sbjct: 352 LAIAQAMHGSTLAPHGKRWAVLGDILELGQYAREEHRTCGAALASL-VDYIVAIGEQARF 410

Query: 413 ----ALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVVVKSSNSCGFY 458
               A++  LP+     YS  ++               ++  +   D+V++K+S   G  
Sbjct: 411 FIEGAIEAGLPQDHAYFYSADLENSAEVEASKRAAADLLKEQVRGDDLVLIKASLGLGMD 470

Query: 459 RLINLLLE 466
            LI  L E
Sbjct: 471 TLIKQLSE 478


>gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 497

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/498 (25%), Positives = 203/498 (40%), Gaps = 53/498 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYVALRGERFDGHDFAADAVAQGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +LS+P   V++   AL ++A   +      +IA+TGS GKT+ K +L   
Sbjct: 67  VDR----LLPALSVPQVLVENTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D D  I+E+G    G+I +LT + +P
Sbjct: 123 LEEAGRVDGTTVYANPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K+ I+  L   G   +N DD+F    + + HA  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVARTKSAIYAALPADGVAVINADDAFGAWFEQQLHAQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +AD   R  +     +   +       ++     G H   N L   G+
Sbjct: 243 HGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTPQGEAQIALPLPGRHNVLNALAAAGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+   P  GR   +  +       LID+SYNANP S+ AAI  L+ 
Sbjct: 303 ALGAGIALPIIAAGLAQARPVAGRQIAHTLSS---GAVLIDDSYNANPGSLDAAIDTLAA 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G   ++ H           +  ++  G    A   A     
Sbjct: 360 AP----GAGWLVLGDMRELGPEGKALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDV-------------------------------VVVKS 451
            V    T   L   +Q+ L    V                               ++VK 
Sbjct: 416 RV--FATHAALVAALQADLAQVAVSPTQTQESSSMHEHTGAAAQTAATTAQVPPTLLVKG 473

Query: 452 SNSCGFYRLINLLLEEFP 469
           S      R++  LL    
Sbjct: 474 SRGSAMDRIVAALLAALE 491


>gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 613

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 204/439 (46%), Gaps = 35/439 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  + +DSR +     FFAI     +G+ +I   + KGA LV+ +   V         + 
Sbjct: 203 VKNVVMDSRKVTEGSLFFAI----NNGNSYIKDVLDKGASLVIADNTDVVDER-----IV 253

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YNNH
Sbjct: 254 KVSDTVATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNNH 313

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      + +
Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNV 373

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK E+ E ++K  T F+  DD +   L           +   G ++  ++++  ++  
Sbjct: 374 FKAKTELLEFVDKEDT-FVCGDDVYLAKL----------DVNKIGFNEENNYRIESYEFS 422

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + S     L GK  ++    +G H   N  + + +   +    +   + L        R
Sbjct: 423 DKGSKFT--LDGKEYQMSL--LGKHNISNTAIAIELAKKIGLGEEEIEEGLKDIKISGMR 478

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R     G    I+++YNA+P SM AAI  L++I  + +  +IA+LGDM E+GE   
Sbjct: 479 FQEIRV----GQDIYINDAYNASPTSMMAAIDTLNEI--YNDKYKIAILGDMLELGEEEV 532

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +H+++   L    I  ++L G  +    D   ++        +  T + +   ++S  +
Sbjct: 533 KYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKFEEHRFCHYSTKEEIVESLKSIKM 592

Query: 443 DGDVVVVKSSNSCGFYRLI 461
           +  V+++K+S       +I
Sbjct: 593 EK-VILLKASRGTALEDII 610


>gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
 gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
          Length = 431

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 195/442 (44%), Gaps = 29/442 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEGDQR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHI
Sbjct: 72  VDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L K   I F+++D+ +   +           + S+G     D  +   +  
Sbjct: 192 KTKGELYDFLRKKDAITFIHHDNPYLMNISQ------GLNLISYGTED--DLYV-NGRIT 242

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +      G++ +V    IG +   N L  + I      +     KAL+ + P
Sbjct: 243 GNSPYLAFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTP 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G
Sbjct: 303 QNNRSQLKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVPH---KMLILGDMRELG 355

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  + + +   N   VWL G    A + +            +  +   +Q    
Sbjct: 356 ADSPAEHQKIVDYIKESNFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKP 409

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN       +  L
Sbjct: 410 KGYTILIKGSNGIKLSSTVEFL 431


>gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 526

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/507 (24%), Positives = 204/507 (40%), Gaps = 56/507 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  + +   + + + G    +  +      V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIAM-SLARIAEIVGGRLADVSDEDAARTVVTGTVEFDSRAVTPGGLFLALPGARSDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107
           F           V      V +   + +P   VD V         A  L           
Sbjct: 60  FAA-------TAVAAGAVGVLAARPVGVPAVVVDPVRPDPAAPGTAGVLEHDVDGSGAAV 112

Query: 108 -------------------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                               TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G
Sbjct: 113 LAALARLASAVAAELVAGGLTIIGITGSSGKTSTKDLIAAVLAPLGEVVAPPGSFNNELG 172

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            P T+ R     D+ + E+   H G I  L  +  P IAV+  +  AHL  F   E IA+
Sbjct: 173 HPWTVLRATRSTDYLVLEMSARHPGNIAALARIAVPSIAVVLNVGTAHLGEFGSREVIAA 232

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCS 267
            K+E+ + + ++G + LN DD     +  K+ A     +   G+   A D         +
Sbjct: 233 TKSELPQSVPESGVVILNADDPAVAAMADKTAA----RVVRVGRGAEALDVCADGVSLDA 288

Query: 268 -EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +    +      + V     G H   N L    +     A  +    AL+   P    
Sbjct: 289 LARPSFTLHTGAADVPVTLAVHGDHQVSNALCAAAVALECGATPEQVAAALATAGPVS-- 346

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--HGEGRRIAVLGDMCEMGEL 384
             R +    +   T+I+++YNANP SM+A +  L+ +S     +GR  AVLG+M E+G+ 
Sbjct: 347 RHRMQVTAREDGVTVINDAYNANPDSMRAGLKALAWMSRGGASKGRSWAVLGEMAELGDD 406

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPR---SIHVHYSETMDGLFLFIQ 438
           + + H  +  +    ++S + + G        L  A+               D     ++
Sbjct: 407 AITEHDRIGRLAVRLDVSRLIVVGSGRPMSAMLHGAVMEGSFGSEAIPVADTDAALEILR 466

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + L  GDVV+VK+SNS G   L + L+
Sbjct: 467 AELRPGDVVLVKASNSAGLGALADALV 493


>gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
 gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 120/470 (25%), Positives = 220/470 (46%), Gaps = 19/470 (4%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +F ++++A+ G ++ G  P G V G+  DSR++ P   F  I G  +DGHDF + A++ G
Sbjct: 4   SFEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTK 123
           A  ++V+ +   ++    +P+  V+D + AL KLA   R R     +I +TG+ GKTT K
Sbjct: 64  AAALLVSRNPFDAVPP--VPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTVK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   LS    T     + NN IG+PL++     +  F + E G+SH  ++  L  ++ 
Sbjct: 122 ELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGEEAFWVMEAGISHPNDMDELGAILE 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I  + P H +        A  K+++   L   GT  ++ D   +  L  ++ A+ 
Sbjct: 182 PDLALILNVGPGHAAGLGDR-GTAHYKSKLLAHLAPGGTAIISAD---YPDLAREARAVR 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + ++     +  D++        E +    + L G S++V     G   A+N++    +
Sbjct: 238 QELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDGVSIDVEAPFRGAFGAENVIAVAAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +      + F       +R+ C+   G + +ID+SYNANP S    +   ++
Sbjct: 298 AHRLGLGAEEIA---AGFAGAALPKQRFACS-RAGDWLVIDDSYNANPLSFSRMLEAAAE 353

Query: 363 ISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++     R  + VLG+M E+G LS+  H +L  +++      V   G H+   +D L   
Sbjct: 354 MAGDHADRPLVCVLGEMGELGSLSEDEHRNLGRLVADIKPRLVCWKGGHLEEFEDGLHAG 413

Query: 422 IHVHYS---ETMDGLFLFIQS-SLVD-GDVVVVKSSNSCGFYRLINLLLE 466
            +        + + +F  + +  L   G V++ K S S     L++   E
Sbjct: 414 RYGGAFCPVTSAEDMFKGLAACDLGSGGGVILFKGSRSNKLETLVSAFTE 463


>gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
 gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
          Length = 418

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 207/437 (47%), Gaps = 35/437 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I     FFA+KG +++G+ F   A++ GA   +V+ ++  +  +    +  V 
Sbjct: 16  VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEVYQTQDA----IILVP 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R + KATII +TGS GKTTTKE++   LS   KT A  G+ NNHIGV
Sbjct: 72  NVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  MP+D + GI E+G +H  EI FL+ +  P    IT    AHL  F G+E +   
Sbjct: 132 PLTLLSMPIDTEMGIVEMGANHQKEIEFLSSICEPDFGYITNFGKAHLEGFGGVEGVIKG 191

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  LE+     F+N DD        K      K I +          L        
Sbjct: 192 KSELYHFLEQNNKIAFINPDD--------KIQVDKTKNITTIPF-------LPSIALKEA 236

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             ++++      + +  + IG +   N+ + + I +      D   +A+  +     R +
Sbjct: 237 NPFVQLSYDN--LVINSNLIGTYNYTNIAIAITIGNYFKVKDDVIKEAIEGYESTNNRSQ 294

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +NQ    +I ++YNANP+SMK A+     +       +I +LGDM E+G+     
Sbjct: 295 ----IINQNSNVIILDAYNANPSSMKVALENFHALKADH---KIVILGDMFELGDARLEE 347

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +  + +  N +  +  G H    K+      + +  +T D      ++++     ++
Sbjct: 348 HQQIVNMATQMNFNGYYFVGEHFYQTKE------NENLFKTFDDFKNDFENNIPSNSSIL 401

Query: 449 VKSSNSCGFYRLINLLL 465
           +K S      R++ LL 
Sbjct: 402 IKGSRGMRLERVVELLK 418


>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
 gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
          Length = 493

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 144/498 (28%), Positives = 221/498 (44%), Gaps = 43/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +   GI   G        DSR +     F AI G   DGHDF
Sbjct: 1   MMPM-GLAEIEQAVHGRLVTAEGISSNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TII 111
           +     +GA   +V+      +    +P   VDD + AL +LA     R +A     T+I
Sbjct: 60  VSKVGAQGAVAALVD----HEVADAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 115

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 116 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 175

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 176 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 235

Query: 232 FELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCS-EQSWMEVQ-LQGKSMEVVH 285
              +   +       +  FG    ++ +        +    +    E++  +G+  +V  
Sbjct: 236 VAAMSGIAPG----EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNL 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
              G H   N L    +V  L   +D     L+                  +  FTLID+
Sbjct: 292 GICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           S+NANP SMKA +  L +   + E +  RIAVLG M E+G   ++ H  +        ++
Sbjct: 352 SFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVN 411

Query: 403 HVWLSG----FHVLALKDALPRSIH-----------VHYSETMDGLFLFIQSSLVDGDVV 447
            +   G      + AL +A+ +               H  +  D L   + +    G VV
Sbjct: 412 ALIAVGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATE-HAGTVV 470

Query: 448 VVKSSNSCGFYRLINLLL 465
           ++K S++ G   L     
Sbjct: 471 LLKGSHASGLSALAERWQ 488


>gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 426

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 211/438 (48%), Gaps = 26/438 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ D+R +   + FFA+KGP+++G+ F   A++ GA  VVV+   V            
Sbjct: 14  RSVTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQDDR----YVL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      I+AITGS GKTTTKE++   +S   KTYA +G+ NNHI
Sbjct: 70  VDDVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTL  M   ++FGI E+G +H  EI      V P+  +I  +  AHL  F G E + 
Sbjct: 130 GIPLTLLAMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLINNVGKAHLEGFGGFEGVK 189

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L E  G  F+N  +     +         +    +G  +N+DF   K+ + 
Sbjct: 190 KGKGELYQYLFETNGIAFINSKNEHLMEM------SPFEAPVLYG--RNSDFYNAKFLKS 241

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                    + G    V    +G +   N+L  L I          A +A+  + P   R
Sbjct: 242 DP---FVAFIAGNEELVETKLVGDYNFDNILAALCIGKYFGVPSIAANQAIEQYDPTNNR 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N+    +I +SYNANP SM+AAI   + +       ++ +LGDM E+GE S+
Sbjct: 299 SQIVKTEKNE----VILDSYNANPTSMRAAIENFASLQKEN---KVVILGDMYELGEESE 351

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H ++  +L+L   + + L G ++ A   A        Y +T +    F+ S+ +    
Sbjct: 352 VEHANIGALLNLLTDTKIILIGKNMAA---ASKECTAAAYMDTKEAAVNFLVSNQILNST 408

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S   G   L+ LL
Sbjct: 409 ILLKGSRGMGLESLMPLL 426


>gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 460

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 220/465 (47%), Gaps = 17/465 (3%)

Query: 7   FHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              +   + G+   I      +  +  IS +SR+      F AIKG ++DGH F   +V+
Sbjct: 6   LKKIASIVSGNLQKISCFHASKLIIQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVK 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+  ++        I S+  P   V++ + A+ +LA   R +S A  IAITGS GKT+ 
Sbjct: 66  NGSLAILSEK-----ILSIDHPQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSV 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    LS +  T +   + NN +GV LTL R+     + + E+G S LGEI+F + +V
Sbjct: 121 KEMTHTILSQVGSTISTKKNNNNSLGVLLTLLRVNEFHQYVVIEIGASQLGEIKFSSKIV 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +I  +  +HL  F     ++ AK+EIF GL K  T  +N D+   +  K K   L
Sbjct: 181 NPDVVLINNLFASHLKGFGSFSNLSRAKSEIFFGLSKFNTAVINLDNHDIKHWKHKIRNL 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                +S  K K + F      + +     ++        V  H  G H   N + +  +
Sbjct: 241 SKVWFFSLKKKKKSHFYSNTISEKNFFMKFDIHTPFGIARVSSHLAGLHNISNSIASAAL 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + A +D   K L  FHP +GR      +  +    ++D++YN+N  SMK+AI VLS+
Sbjct: 301 SISVGAKIDQIEKGLKNFHPIDGRMYPVYISSEK---IILDDTYNSNFGSMKSAIDVLSK 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +     G R+ V+GDM E+G+ S  +H  ++ ++   N++ +   G + L +  +    +
Sbjct: 358 MP----GYRVLVVGDMLELGQYSSFYHKKISRIIQNKNLNTIISFGKYSLFISQSFQNGM 413

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           H H  + +    +++ S + +   +++K S       +I  +   
Sbjct: 414 HFHSKKKLTKKLIYLIS-IHEKISILIKGSRKMRMEEVIEDIRRR 457


>gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
 gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
          Length = 433

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 115/438 (26%), Positives = 206/438 (47%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R+I+    FFA++G  ++ ++F   A+++GA   +++     +          V 
Sbjct: 17  VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIIDDQQYHTDERC----ILVP 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL  LA + R+  +  +I +TGS GKTTTKE++   LS   +T+A  G+ NNHIGV
Sbjct: 73  DVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +  D++  + E+G +H  EI  L  +  P   +IT +  AHL  F G E +   
Sbjct: 133 PLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGLITNVGMAHLDGFGGFEGVKKG 192

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           KAE++  L+ + G  F+N D+ +   L   +H   +  I  +G  ++           S 
Sbjct: 193 KAELYAHLKQQQGKAFINNDNPY---LLEMAHTAQLSDIVYYGSERSNTI---SGALNST 246

Query: 269 QSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             ++E+    QG    V     G +  +N+L  + I    +   +   K LS + P+  R
Sbjct: 247 DPFLELSWQKQGSEFSVGTQLTGAYNFENILAAICIGDFFSLTPEQINKGLSGYAPQNNR 306

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N    T+I + YNANP+SM AA+  +  +       ++ ++GDM E+G  S 
Sbjct: 307 SQLTKTEHN----TVICDFYNANPSSMNAALKNMDSL---HAANKVVIIGDMFELGSESA 359

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H+ +    +   +  +   G +              HY E+     +++Q   V   +
Sbjct: 360 EQHLQIILQATNMTLDTLIFIGKNF----HQAGMGHSGHYFESPADAAVYLQQQPVKDSL 415

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      +L+  L
Sbjct: 416 ILLKGSRGMALEQLLPQL 433


>gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 203/467 (43%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
            Q GA  V+ +           +P   V+D   AL  LA    ARLR + T++ +TGS G
Sbjct: 60  GQAGAVAVLGSRPTA-------LPTVVVEDARTALQALAADVVARLRERLTLVGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS   T A  G+ NN +GVPLT+ R      F + E+G   +G++  L
Sbjct: 113 KTSTKDLLAAVLSSAAPTIATKGNLNNELGVPLTMLRAGAATRFLVVEMGARRIGDLAKL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV   +AV+  +  AHL  F     IA  K E+  GL   GT  LN DD     +++ 
Sbjct: 173 TDLVPLDVAVVLNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGTAILNADDPRVVAMRSL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       + +FG +++AD ++R             ++    +  V    +G H A N  
Sbjct: 233 TDG----PVLTFGHAEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAA 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +         +D A   L+          R       G  TL+++SYNA+P S +AA+
Sbjct: 289 AAVAAALSAGLTLDAAAAPLATASLTRW---RLELRDIAGGVTLLNDSYNASPGSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I     GRR+AVLG M E+G+ S++ H  + E  +      V   G  V  L  A
Sbjct: 346 DALAAI---EGGRRVAVLGQMLELGDESEAEHRAVGEYAAAR-ADVVVTVGEAVRPL--A 399

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +                 +++  L  GDVV+VK+S       +   L
Sbjct: 400 VGAGERAVAVADNGAAVDWLRGHLAPGDVVLVKASRGARLDEVAAAL 446


>gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
 gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
          Length = 432

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 200/443 (45%), Gaps = 30/443 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEAQYAIEGDRR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHI
Sbjct: 72  VNDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQTHNILYTQGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHQGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L K G  TIF+++D+ +   +           + S+G  +  D  +     
Sbjct: 192 KTKGELYDFLRKKGNSTIFIHHDNPYLMNIAK------GLNLISYGSGE--DLYV-NGCI 242

Query: 266 CSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                ++ ++ +    G+   +    IG +   N L  + I      +     +AL+ + 
Sbjct: 243 TGNSPYLALEWKAEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGVEDRKIDEALAGYT 302

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +    A N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+
Sbjct: 303 PQNNRSQLKETADN----TLIIDAYNANPTSMAAALQNFRNMTVSH---KMLILGDMREL 355

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S + H  + + +   +   VWL G    ++  +            +  +   ++++ 
Sbjct: 356 GTESLNEHQKIVDYIKESDFEKVWLVGEQFASVCHSFKT------YANVQEVIKELETNK 409

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN       +  L
Sbjct: 410 PKGYTILIKGSNGIKLSSTVEYL 432


>gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
 gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
          Length = 476

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 120/444 (27%), Positives = 200/444 (45%), Gaps = 27/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+ KG    +V+    A  G+       VD
Sbjct: 51  VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAGNNR--FILVD 108

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A  +LA   R      +I ITG+ GKTT+KE+++  L+   K +  +G++NN IGV
Sbjct: 109 NALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNNDIGV 168

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  M  D +  + E+G SH  +I  L   V P   +IT +  AHL  F   E + + 
Sbjct: 169 PRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKNT 228

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--------L 260
           K E+++ L+     +FLN  +     +  +      + + ++G+   AD +        L
Sbjct: 229 KGELYDYLKAHNALLFLNESNPDLVEMAEQRE---FERVITYGQDNTADVKGEVVSCAPL 285

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            K+   + QS    Q+     EV  + IG +   NML  + I      +      AL  +
Sbjct: 286 LKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHFGVEPQKICHALESY 345

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +      N+    LI ++YNANP+SMKAAI     +       ++A+LGDM E
Sbjct: 346 VPSNNRSQLTETKDNK----LIVDAYNANPSSMKAAIENFRLMDIKN---KMAILGDMRE 398

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+++   H  + + L    + +VWL G            +        ++ +   I + 
Sbjct: 399 LGDVTAEEHQRVVDELIASGLENVWLVGEEFG------KTNCSFRKFADIEEVKAAIAAQ 452

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
                 +++K SN    + L  LL
Sbjct: 453 KPIDHYILIKGSNGIKLFELPELL 476


>gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus MTCC 5462]
          Length = 462

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 209/471 (44%), Gaps = 26/471 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAF---FAIKGPHYDGHDFILHA 60
            T  ++ + ++   +       V  G++ DSR + P        A       G       
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLLSHCVA----SVTGTSLFQRR 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGK 119
           + +G   ++    +        +P   V D L A+ KLA     ++    ++AITGS GK
Sbjct: 59  LLRGQSQLLWQRTICQMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+
Sbjct: 117 TTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+    LL +++
Sbjct: 177 SLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP---LLVSRA 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +  ++  +FG                  +   V+ Q   +      +G +   N L  
Sbjct: 234 KQV-TQSQETFGLHPENTLFAHSISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L +        +   KAL+ F        R +  +      ++ + YNANP +MKA I  
Sbjct: 292 LLVGRRFHVKPEAMQKALAHFQVTA---NRTQWLIGDVGEQILSDVYNANPTAMKAVIHD 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S+      GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL 
Sbjct: 349 FSEFQTA--GRHIAVLGDMLELGEQSRTLHAGLADALDPHEIQEVYLYGSEMQALAEALT 406

Query: 420 RS---IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  VHY   +    +   +Q+ +   D++++K+S+      ++  L+
Sbjct: 407 TKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMLLLKASHGLHLETVLAALV 457


>gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 435

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 197/437 (45%), Gaps = 28/437 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +N + I+S  +   + F AI+G    G+ +I  A +KGA ++  +           +  
Sbjct: 24  EINNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGAYVIYDDKTKKTPYPKAFL-- 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D +  L K A   R      II ITGS GKTT K+++   LS+  K     G+ NN
Sbjct: 78  --VNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQLLSTKYKGKKTEGNLNN 135

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P++L R     DF + E+GMS  GEI  L  + +P   +IT I  +HL      E 
Sbjct: 136 HIGLPVSLLRAENSDDFLVLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSREN 195

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK+EI + ++    +FLN DD F   L           + + GKS  AD++ +    
Sbjct: 196 VFKAKSEIIKHVKAK--MFLNGDDPFLGDLPGI-------KVSADGKS-TADYRAKNINL 245

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + +  ++    + + +  + IG H   N+L  + I        +              
Sbjct: 246 SGDGTKFDLN---EGLTLETNLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKLTAM 302

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++       G    I+++YNA+P SM+ AI   S I  + +  ++ +LGDM E+GE  
Sbjct: 303 RFQKIE----NGNIIYINDAYNASPISMEKAILTFSDI--YNDRYKVVILGDMLELGEKD 356

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             FH +L ++L     + + L G  +  L + + + ++V + +    +   ++    +  
Sbjct: 357 AEFHEELEKILRNTKQNEILLYGSLMKNLYEKI-KDMNVFHFDEKSFIREKLRGHNSEKL 415

Query: 446 VVVVKSSNSCGFYRLIN 462
            V++K S       +I 
Sbjct: 416 AVLLKGSRGMRLEEIIE 432


>gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 431

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 196/442 (44%), Gaps = 29/442 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEGDQR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHI
Sbjct: 72  VDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L +K  T F+++D+ +   +           + S+G     D  +   +  
Sbjct: 192 KTKGELYDFLRKKDATTFIHHDNPYLMNISQ------GLNLISYGTED--DLYV-NGRIT 242

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +      G++ +V    IG +   N L  + I      +     KAL+ + P
Sbjct: 243 GNSPYLAFEWKAGKDGEAHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDKALAEYTP 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G
Sbjct: 303 QNNRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH---KMLILGDMRELG 355

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  + + +   +   VWL G    A + +            +  +   +Q    
Sbjct: 356 ADSPAEHQKIVDYIKESDFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKP 409

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN       +  L
Sbjct: 410 KGYTILIKGSNGIKLSSTVEFL 431


>gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
 gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
          Length = 475

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 199/472 (42%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL     +     G +        V G + IDSR++ P   F A++G   DGHDF   
Sbjct: 1   MIPL-ALSQIALLSGGKATPGAEDALVTGPVVIDSRAVVPGALFVALRGERADGHDFAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           AV                +   ++P   VDD + AL +LA     R  + T++ +TGS G
Sbjct: 60  AV----AAGAAGVLAQRPLDDPALPAVIVDDAVAALGRLAGGVLARLPQVTVVGVTGSAG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T A  GS+NN IG PLT+ R        + E+G   +G + +L
Sbjct: 116 KTSTKDLIAQVLRRHGPTVAAEGSFNNEIGHPLTVLRADEQTRHLVLEMGARGIGHVAYL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I V+  +  AHL  F   E IA AK E+ E L   G   LN DD     + A+
Sbjct: 176 CRVAPPRIGVVLNVGSAHLGEFGDREAIARAKGELVEALPADGAAVLNADDPLVRAMAAR 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     + +FG++ +AD +       +       +     S  V     G H   N L
Sbjct: 236 TAA----EVLTFGRAADADVRAADETLDARGRPRFTLVTPRGSAPVELRLHGRHAVGNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +       V+   +ALS          R          T+++++YNANP SM+AA+
Sbjct: 292 AAAAVALRAGMAVEAIARALS--QAAPLSRWRMEVTERPDGVTVVNDAYNANPESMRAAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             ++ ++    GR  A LG+M E+G  S + H  + + ++    + +   G     L D 
Sbjct: 350 EAVAHMARAAGGRAFAALGEMAELGARSVAEHEKIGQHVARNGYAGLVAVGEAAAPLLDG 409

Query: 418 LPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             ++          + +      +   L   DVV+VK S   G  R+   LL
Sbjct: 410 ARQAGSWTGECVQVDDVGAAVTALSERLRPRDVVLVKGSRVAGMERVAQGLL 461


>gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 201/467 (43%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
            Q GA  V+ +           +P   V+D   AL  LA    ARLR + T++ +TGS G
Sbjct: 60  GQAGAVAVLGSRPTA-------LPTVVVEDARTALQALAADVVARLRERLTLVGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS   T A  G+ NN +GVPLT+ R      F + E+G   +G++  L
Sbjct: 113 KTSTKDLLAAVLSSAAPTIATKGNLNNELGVPLTMLRAGAATRFLVVEMGARRIGDLAKL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV   +AV+  +  AHL  F     IA  K E+  GL   GT  LN DD     +++ 
Sbjct: 173 TDLVPLDVAVVLNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGTAILNADDPRVVAMRSL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       + +FG +++AD ++R             ++    +  V    +G H A N  
Sbjct: 233 TDG----PVLTFGHAEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAA 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +           T   A +          R       G  TL+++SYNA+P S +AA+
Sbjct: 289 AAVAAALSAGL---TLDAAAATLATASLTRWRLELRDIAGGVTLLNDSYNASPGSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I     GRR+AVLG M E+G+ S++ H  + E  +      V   G  V  L  A
Sbjct: 346 DALAAI---EGGRRVAVLGQMLELGDESEAEHRAVGEYAAAR-ADVVVTVGEAVRPL--A 399

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +                 +++  L  GDVV+VK+S       +   L
Sbjct: 400 VGAGERAVAVADNGAAVDWLRGHLAPGDVVLVKASRGARLDEVAAAL 446


>gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
 gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
          Length = 489

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 144/493 (29%), Positives = 218/493 (44%), Gaps = 41/493 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ T  ++ +A+ G  +     VP+G V      DSR +     F AI+G   DGHD+
Sbjct: 2   MMPM-TIGEVAEAVAGRLVEGANGVPEGAVALHAVSDSRQVENGSVFVAIQGERVDGHDY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TII 111
           +     +GA   +V+ ++  +     +P   VD+ + AL  LA A   R +A     TII
Sbjct: 61  VASVADQGAVAAIVDHEVPGAA----VPQIVVDNTVTALGDLAKANIARRRASGEPFTII 116

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK++    LS++  T A +GS+NN IG+PLT   +     + + E+G +H
Sbjct: 117 GITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNNEIGLPLTALTVGEHTRYFVAEMGANH 176

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT +  P IAV+  +  AHL  F  +E IA AK EI  GL   G   LN DD  
Sbjct: 177 VGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPNGIAMLNTDDEH 236

Query: 232 FELLKAKSHALGIKTIYSFGKSK-----NADFQLRKWKQCSEQSWMEVQL-QGKSMEVVH 285
            E + A +       +  FG  +     +A           +++   +    G+  +V  
Sbjct: 237 VEAMSAVAPG----EVLRFGIDESNAGRDALHACDIVTDSFDRASFTMVAGDGEQSQVAL 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDE 344
              G H   N L    +   L   ++   + L                   G  FTLID+
Sbjct: 293 AIPGAHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVSTVERGGARFTLIDD 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+NANP SM A +  L++ S   +  R+AVLG M E+G   +  H  +    + + I  V
Sbjct: 353 SFNANPDSMHAGLDGLARWSEGAQ-YRVAVLGAMLELGGDEKQLHRSIGAYAAEHGIDEV 411

Query: 405 WLSGFHVLALKDALPRSIH--------------VHYSETMDGLFLFIQSSLVDGDVVVVK 450
              G       DAL   +                H +   D + + I     +G VV++K
Sbjct: 412 VAVGSPTDQALDALAGELAQGAKNADGAMAVEWAHSAAQADDMIVRIARE-HEGTVVLLK 470

Query: 451 SSNSCGFYRLINL 463
            S++ G   L   
Sbjct: 471 GSHASGLSTLAER 483


>gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
 gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
          Length = 499

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 126/490 (25%), Positives = 194/490 (39%), Gaps = 36/490 (7%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++   + G       P+  V G +  DSR I   + F A+ G   DGHD+   AV 
Sbjct: 4   MTLREIADVVGGTLHDAPDPEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAAAAVA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---------------- 106
            GA  V+    +      +      V     AL   A  +                    
Sbjct: 64  AGAAAVLAARPVGVPAVVVEPRRCSVPATSMALAHDADGSGAAVLAALAALARASVERLS 123

Query: 107 ---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                T++ +TGS GKT+TK++L   L+ +    A  GS+NN +G P T  R   D  F 
Sbjct: 124 AAGGLTVVGVTGSSGKTSTKDLLAAVLAPLGPVVAPPGSFNNELGHPWTALRATADTRFL 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    +G I  L  +  P I V+  +  AHL  F   E IA AK E+ E L   G  
Sbjct: 184 VLEMSARGVGHIAALAEVAPPRIGVVLNVGTAHLGEFGSREAIARAKGELVEALPADGLA 243

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
            LN DD       A   A     +   G S +AD++  + +   + ++   +     S E
Sbjct: 244 ILNADDPNV----AAMAARTAARVVRVGLSGDADYRASEVRLDEQARATFTLHTPAGSTE 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L    + S   AD+ T   ALS         +R          T++
Sbjct: 300 IRLGVHGEHQVGNALAAAAVASECGADLATVAAALSGARAVSE--RRMDVRTTADGVTVV 357

Query: 343 DESYNANPASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++SYNANP S++AA+  L  +  +     R  AVLG+M E+GE S   H  +  +    +
Sbjct: 358 NDSYNANPDSVRAALKALVTMSRAGERPRRSWAVLGEMAELGEESVLEHDGIGRLAVRLD 417

Query: 401 ISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  + + G      A+                   +D     +   +  GDVV+VK+S S
Sbjct: 418 VDRLVVVGTGRPSRAMHQGAVMEGSWGEESVLVPDIDAAVALLDREVEPGDVVLVKASKS 477

Query: 455 CGFYRLINLL 464
            G + +   L
Sbjct: 478 VGLWEVAEHL 487


>gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 473

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 230/471 (48%), Gaps = 24/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   + Q + G S G  P   V G SIDSR++ P + F+A+ G + DGH F+  A
Sbjct: 11  MMP-TTLQKITQQLCGRSAG-SPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQFVTAA 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   VV+  +    G    P   V+DV  AL + +   R   +A +I +TGSVGKT
Sbjct: 69  FEKGAAAAVVSQPVTREAG----PCIQVEDVAAALAEASFEHRNSLEALMIGLTGSVGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT++ML   LS      A   ++NN +GVPL+L  +    ++ + E+G S  GEI  L  
Sbjct: 125 TTRQMLHAVLSKAYTGTASRENFNNRLGVPLSLLGISEADEYAVIEMGASAQGEIGALGE 184

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++T IAPAHL  F  IE + S K+E+F+ L ++G   L        ++ A   
Sbjct: 185 LVQPEIALLTQIAPAHLDGFGSIEGVISGKSELFDNLPESGLAVLP---EHLYVMPAIRR 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  + + + G+  +AD  L   +  S Q   E    G S  +  +  G H A +  + +
Sbjct: 242 RIHSR-VLTVGQGPSADICLNNIRLDSGQLKFE--CDGDSFRM--NAPGKHFASSAGLCV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L          L  F P EGR  R       G +T++D++YNA+P SM A +  L
Sbjct: 297 AIARELGLTTAQIQAGLENFSPVEGRCCRRMI----GDWTVLDDTYNASPISMSAGLVSL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G RIA+LGDM  +GE ++ +H  L + ++   I ++ + G     +  A  R
Sbjct: 353 --LQTSVSGPRIAILGDMLCLGEHAKYYHRKLGQEVARTGIDYLLVYGEFADHVAAAATR 410

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  +     ++ L   +   L  G  +++K+S +    RLI +L  E
Sbjct: 411 GGMSASRIAAFPKLEQLQELLPLWLSPGAGMLLKASRNMQLERLIPVLEAE 461


>gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 470

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 215/475 (45%), Gaps = 22/475 (4%)

Query: 6   TFHDLLQAIQGHSI---GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   L  A+ G  +      P   V G +  DSR I P + F A  G   DGH F+  AV
Sbjct: 5   SLSHLADALGGRLVVRGDDTPDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFVGTAV 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIAITGSV 117
           ++GA L +V  ++        +    V D + AL+ LA       R   +  I+ ITGS 
Sbjct: 65  ERGAALAIVERELDDP-----VSQIVVPDAVTALSDLARDVVARVREHGRLRIVGITGSN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK +L   LS   +T +   S+NN +G PLT+ R+  D  F + E G S  G I  
Sbjct: 120 GKTTTKNLLARILSDEGETVSPRASFNNEVGAPLTMLRVTEDTRFLVSEFGASAPGAIAH 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  LV P + V+  +  AH   F GIE    AK+E+     + G   LN DD     ++ 
Sbjct: 180 LAGLVTPDVGVVLMVGMAHAGGFGGIESTFRAKSELVHATREGGLAVLNVDDPRVAAMEP 239

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +   G + +  FG+ + A  +    +  +  +  ++ + G+   +    +G H   N L
Sbjct: 240 FARERG-QDVRWFGRGERAAVRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNAL 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L   + L      AI   +     E   +     L      +I+++YNA+P SM AA+
Sbjct: 299 AALATATALGVPAAEAI---ARLETVEIAERWRMQPLGSDRVRIINDAYNASPDSMAAAL 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-D 416
             L+QI+  GE R +AVLG M E+GE +   H  +  +     I  + + G     +  +
Sbjct: 356 RTLAQITGPGE-RTVAVLGAMSELGEYADEEHDRVGLLAVRLRIQRIVVIGPEARRMYLE 414

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           A+ +        +    D  + ++ + L DGD V+VKSSNS G   L + L E F
Sbjct: 415 AIAQGSWDGEAVFFADADAAYDYLATELRDGDRVLVKSSNSAGLRFLGDRLGELF 469


>gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
 gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
          Length = 432

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 205/438 (46%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I    VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI--LLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+ +   L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEY---LTAISQGL---TRICYGMEGGEGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNVAH---KMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A+ L       V L+G     +           + + +  L   ++     G  
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFKDVVALKESLERYKPKGYY 414

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SNS    +L  +L
Sbjct: 415 ILIKGSNSMKLGQLQEIL 432


>gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
 gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
          Length = 431

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 202/439 (46%), Gaps = 25/439 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +S D+R +     FFA+KG ++D + F   A+  GA   +V+   +            V
Sbjct: 15  SVSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDKQDLPKHPQ----FIFV 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L  LA   R +    +I +TG+ GKTTTKE++   LS   KT A +G+ NNHIG
Sbjct: 71  DDVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  D +  I E+G +H  EI  L  +  P   +IT +  AHL  F G E +  
Sbjct: 131 VPLTLLAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGLITNVGKAHLEGFGGFEGVKK 190

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ L K  GT+F+N D+   + +   + +   K +  +G S +     +      
Sbjct: 191 GKGELYDFLSKNGGTVFINRDNLHLQEM---ARSRSFKEVIYYGTSSDNYVFGKLIANDP 247

Query: 268 EQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              ++ V+        EV     G +  +N+L  + I   L        + ++ + P+  
Sbjct: 248 ---YLTVEWSDGENKDEVQSQLTGIYNFENILAAIAIGKKLGLTTQQIHEGINSYKPQNN 304

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   N    T+I + YNANP+SM  AI  ++++       ++ +LGDM E+GE S
Sbjct: 305 RSQIIKTERN----TVIGDFYNANPSSMAVAIENIARLEADN---KVLILGDMFELGEES 357

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + H  + E      I+ V   G            +    + + ++ L  ++  + V   
Sbjct: 358 GAEHRAVIEKAEKLGIAKVLFVGQEFFK-----NSNQKSVFLKNVEELRTYLHENPVHQA 412

Query: 446 VVVVKSSNSCGFYRLINLL 464
           ++++K S      ++I  L
Sbjct: 413 LILLKGSRGMKLEQVIAYL 431


>gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
 gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
          Length = 488

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/486 (25%), Positives = 206/486 (42%), Gaps = 39/486 (8%)

Query: 4   LWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           L +F + ++A+ G  +   G   +     ++ DSR++     F  + G   DGH +IL A
Sbjct: 16  LLSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYILQA 75

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPV---------FGVDDVLGALNKLAVAARLRSKATI- 110
           +++GA +V  + +    +  L +             V + L AL   A A   +    I 
Sbjct: 76  LEQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTALQCAAAAYVKKFPDLIK 135

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGS GKTTTKE++   LS         G+ N+  G+PL++ ++  + + GIFE+GM+
Sbjct: 136 IGITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSETGLPLSVFKIRAEHEVGIFEMGMN 195

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             GEI  L +++ P  AV+T I  AH+      + IA  K +IF         F+   D 
Sbjct: 196 RKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFTADCVAFIPAADP 255

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + + L          T+  +G + +   +++        +        + + ++    G 
Sbjct: 256 YADFLAENCGG----TVVRYGVNTDPVSRIKN--AGLAGTEFLY----RQVPILLPLPGA 305

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               + L    + S +    D     L    P  G     R  +  G  +++ + YNANP
Sbjct: 306 GNFSDALAAASLASYMGFGADDIKAGLESVRPLFG-----RSQIIGGPVSVVQDCYNANP 360

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM+ A+   + +     GR+IAVLGDM E+G  S+S H+      +      +   G  
Sbjct: 361 DSMEQALDFFASLDIE-PGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVLLVCIGRA 419

Query: 411 VLALKDALPRSIHVH------YSETMDG----LFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V A  + L R   V       ++++ D         +   L  GDVV++K S      RL
Sbjct: 420 VSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLLKGSRGMRLERL 479

Query: 461 INLLLE 466
              L E
Sbjct: 480 TPYLTE 485


>gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 462

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 211/469 (44%), Gaps = 23/469 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+      + G +    +  +  DSR + P   F  ++G ++DGH F+  A  +GA 
Sbjct: 5   LSELINLWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAK 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             VV+ D    I    I  + VDD L A  +LA+  R R    ++A+TGSVGKTTT+E++
Sbjct: 65  AAVVSKDSTVQIPENLI-CWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTTRELI 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  L+++    +   + NN IGVP T+ +        I E+ M  LGEIR L+    P I
Sbjct: 124 TACLTTLGAITSTSDNNNNDIGVPQTILQADFSDAALILEMAMRGLGEIRRLSCCSNPDI 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+      + IA AK EI   L  +GT+ +   D   + + ++     I  
Sbjct: 184 AVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGTVIIPAGDPLLDSILSEKWPGRIIR 243

Query: 247 I--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGYHMAQNMLMT 299
           +     G+   +       K+ +      + L   S+ V          G H A N ++ 
Sbjct: 244 VGLMPLGEEHTS---ASYIKKNAVDLLGVLDLNNNSLSVDKEALTLPLEGMHNAVNFMLA 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   +      ++  H K   G+        G  T++DESYN++P S+KA++ +
Sbjct: 301 IAVALELGISL----SNMNNLHVKTPCGR--NSCFTYGNLTVLDESYNSSPESVKASLDL 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDA 417
           L        GR  AVLG M E+G+ S  FH  + +     ++  V +   G    A+   
Sbjct: 355 L----VTKPGRHFAVLGTMFELGDESIKFHSLIMQHAVDLSLDGVIVVSDGEEAEAMVAV 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  +       +    ++QS L  GD +++K+S   G  +L+  L  
Sbjct: 411 GKQLPNFSIFSQPEEALPYLQSILKPGDNLLLKASRKIGLEKLLPFLEN 459


>gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
 gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 205/438 (46%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I    VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI--LLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+ +   L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEY---LTAISQGL---TRICYGMEGGEGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNVAH---KMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A+ L       V L+G     +           + + +  L   ++     G  
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFQDVVALKESLERYKPKGYY 414

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SNS    +L  +L
Sbjct: 415 ILIKGSNSMKLGQLQEIL 432


>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
 gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
          Length = 468

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 199/469 (42%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T HD    I G ++          +S DSR++   + F A+KG  +D HDF+     +
Sbjct: 3   MLTLHDAAALIPGATVIGDGSVAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   V       +P     D   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 63  GASAALVSRAGVLP----GLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        +  G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASVFAAAVGQDARLSTAGNFNNDIGLPLTLLRLAPAHRLAVIELGMNHPGETGTLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA++      H    + +E +A   A +   L   G      DD +  + +  + 
Sbjct: 179 IAAPTIALVNNAQREHQEFMATVEAVALEHASVIHALGPDGVAVFPADDRYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F  + +           ++   + +      +EV    +G H A+N L   
Sbjct: 239 G---NRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                   + D     L  F P +GR +  R +L       LID++YNANP SM+AAI V
Sbjct: 296 AAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q +      R+ V+G+M E+G+   +FH ++        I  ++ +G        A  
Sbjct: 356 LAQCAAP----RVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATGEATREACAAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L   + ++       V+VK S      R+++ L  +
Sbjct: 412 AAAR--HFDEVGALVAALDAAGYGAAATVLVKGSRYTRMERVVDALTNQ 458


>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 434

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/436 (28%), Positives = 205/436 (47%), Gaps = 22/436 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I P   FFA++G +++G+ +   A+++GA   VV+   +A+          VD
Sbjct: 16  VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQDRC----IVVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +    IIAITGS GKTTTKE++   L S    +   G+ NNHIGV
Sbjct: 72  DVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL ++   ++  + E+G +H GEI  L  +  P   +IT I  AHL  F GIE +   
Sbjct: 132 PLTLLQLDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNIGKAHLEGFGGIEGVKKG 191

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  L +  G  F+N D+ F   L   S  +  +  Y        + +  +      
Sbjct: 192 KSELYRYLAETDGLAFVNNDEPFLVEL---SSGVRKRIFYERSDDPAPNHKPYEVVLLQL 248

Query: 269 QSWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           Q ++ V    ++   +E     +G H  QN+   + +             A+  ++P   
Sbjct: 249 QPFIRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGKKIKAAIENYNPNMN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      + G  +++ ++YNANP+SM+     L   S     +RIA+LGDM E+GE S
Sbjct: 309 RSQWV----SWGTNSILLDAYNANPSSMEV---TLRSFSESPASQRIAILGDMFELGESS 361

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +A++    N   V L G H  A+     R +   +   +  L  + ++   +  
Sbjct: 362 AVEHERVAQLAQSLNFEQVILVGQHFAAIA----RQLGWLHFPNVGALKPWFEARQWENT 417

Query: 446 VVVVKSSNSCGFYRLI 461
             ++K S      +L+
Sbjct: 418 AFLIKGSRGMALEKLL 433


>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 200/455 (43%), Gaps = 16/455 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +L + + G   +       +  + IDSR +   + FF I+G ++DGH+F+  A   G
Sbjct: 4   TLCELEEQLMGSSDLPSAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VVV+  M         P   V D + AL ++A   R++S A +IA+TGS GKTT KE
Sbjct: 64  AVAVVVSQFMPEFEDK---PTIMVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVKE 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS     +    + NN +G+PL++     +  + + ELG+S   ++  L  + +P
Sbjct: 121 MLAHVLSGSGSVHKNFMNLNNQLGLPLSMLEATGEETYWVMELGISLPHDMGELGPIAQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  I PAHL     +E +A  K+ +F+ +   G      D         K      
Sbjct: 181 DMAIVHNIGPAHLEGLGSLENVADQKSSLFKYIRPEGVALCCKDHELLWEAANKIS---- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           K +    + +NA++         + S    ++   ++ EV+    G H A+N        
Sbjct: 237 KPVPFSSQDENAEYYSTLLHTLPDGSGRFLIKAGEETAEVILPTCGSHFAENAAAVTCAA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  ++    + L+     + R   +      G +TLID+SYNANP SM  AI    +I
Sbjct: 297 HQLGMELTEIAERLATVELPKQRFHCH----THGKWTLIDDSYNANPLSMNRAIDTAKRI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +       + VLGDM E+GE +   H DL   ++       +  G H   +      S  
Sbjct: 353 ADDRP--LVLVLGDMLELGEEAGCAHCDLGSKIAETKPDATFYHGKHYSEVASQTNGSTL 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V   + ++ L   I    +   VV+ K S SC   
Sbjct: 411 VPVKQPIEFL-NGIHELGLSDAVVLFKGSRSCHME 444


>gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
 gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 205/438 (46%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I    VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI--LLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+ +   L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEY---LTAISQGL---TRICYGMEGREGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNVAH---KMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A+ L       V L+G     +           + + +  L   ++     G  
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFKDVVALKESLERYKPKGYY 414

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SNS    +L  +L
Sbjct: 415 ILIKGSNSMKLAQLQEIL 432


>gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 509

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 128/500 (25%), Positives = 204/500 (40%), Gaps = 46/500 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            T   + + + G    I P+      V G +  DSR++ P   F A+ G   DGHDF   
Sbjct: 4   MTIARIAEIVGGELADITPEQAAATHVTGTVEFDSRAVGPGGLFLALPGARSDGHDFAAA 63

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK------------------LAVA 101
           AVQ GA  V+    +      +  P  GVD   GAL                        
Sbjct: 64  AVQSGAVAVLAARPVGVPAIVVR-PDGGVDSASGALEHDTDGSGAAVLAALARLAAAVAN 122

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   II +TGS GKT+TK++L   L+ + +  A  GS+NN +G P T+ R   D D
Sbjct: 123 ELAADGLKIIGVTGSSGKTSTKDLLAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRDTD 182

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + E+   H G I  L  +  P +AV+  +  AHL  F   E IA  KAE+ + +  +G
Sbjct: 183 FLVLEMSARHPGNIAALAAIAPPSVAVVLNVGTAHLGEFGSREAIAKTKAELPQAVGPSG 242

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQG 278
            + LN DD     +  ++ A     +    +   +D  +       +   +    +  + 
Sbjct: 243 VVILNADDIAVAAMAEQTDA----RVVRISRDPGSDIDVWAGPVTLDELARPRFTLHTRD 298

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             ++V     G H   N L    +     A       AL+          R + +     
Sbjct: 299 GEVDVNLAVHGDHQVSNALCAAAVALECGATPQQVADALAA--AGPASRHRMQVSTRADG 356

Query: 339 FTLIDESYNANPASMKAAISVLSQIS-------PHGEGRRIAVLGDMCEMGELSQSFHID 391
            T+I+++YNANP SM+A +  L+ ++       P G+ R  AVLG+M E+G+ + + H  
Sbjct: 357 VTVINDAYNANPDSMRAGLKALAWMARQTAGGQPGGKRRSWAVLGEMAELGDDAITEHDA 416

Query: 392 LAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +       ++S + + G    + A+                    D     ++  L  GD
Sbjct: 417 IGRFAVRLDVSRLLVVGSGRAMNAMHHGAVMEGSWGSESTMVADADAALTVLRDELQPGD 476

Query: 446 VVVVKSSNSCGFYRLINLLL 465
           VV+VK+SNS G   L   L+
Sbjct: 477 VVLVKASNSVGLGALAEALV 496


>gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 503

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 196/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV  GA  V+
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVACGASGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +LS+P   V++   AL ++A   +      ++A+TGS GKT+ K +L   
Sbjct: 67  VDRL----LPALSVPQVVVNNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D D  I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQSQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +A+   R+ +     +   +       ++     G H   N L   G+
Sbjct: 243 QGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+   P  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQARPVAG---RQIAQTLPNGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGG 415

Query: 423 HVHYSETMDGLFLFIQSSL------------------VDGDV------------------ 446
            V    T   L   +Q+ L                   +  V                  
Sbjct: 416 RV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQEHAVNQEQQSPSVAALSGATPI 473

Query: 447 -VVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4]
 gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei
           5_1_36/D4]
          Length = 432

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 205/438 (46%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G   I    VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI--LLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E++E L   G   IF++ D+ +   L A S  L   T   +G        +  K   C
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEY---LTAISQGL---TRICYGMEGGEGLYISGKLGAC 247

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R
Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S 
Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNVAH---KMVILGDMKELGETSH 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A+ L       V L+G     +           + + +  L   ++     G  
Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFQDVVALKESLERYKPKGYY 414

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SNS    +L  +L
Sbjct: 415 ILIKGSNSMKLGQLQEIL 432


>gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
 gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 448

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 116/463 (25%), Positives = 199/463 (42%), Gaps = 38/463 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+   D +  I+     +V +  +  + +DSR +   + FFAI     +G+ +I   
Sbjct: 21  MKILFNILDKIFGIK----SVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDV 72

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +             V  V+D +  + +LA   R      +IAITGS GKT
Sbjct: 73  LEKGAALVIADNYKGNDKR-----VIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS    T   +G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+ 
Sbjct: 128 TTKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSS 187

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P I VIT I  +HL      E +  AK E+ + +     I    DD F + L     
Sbjct: 188 IVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIVF-GDDPFLKDLNG--- 243

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G   N ++Q++ +    E    E+    +  +      G H   N  M +
Sbjct: 244 -------IKVGYENNNNYQIKNFTDSDEGLSFEM----EEKKYTVSLNGKHNCINTAMAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +    +     L        R ++      +     I+++YNA+P S+  ++   
Sbjct: 293 VIGKKMGVSYEEISNGLKNLELTPMRFQKIE----KENIIYINDAYNASPISVSFSLETF 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
            ++  + +  +I VLGDM E+GE    +H ++ E   + +   ++L G  +  ALK    
Sbjct: 349 DKL--YNDALKITVLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYGERMAKALKVIQG 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLI 461
               + +    + +   ++     G   V++K S       +I
Sbjct: 407 NKEKITHFTNKEDIKNILEKE--HGKTAVLLKGSRGMKLEEII 447


>gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
 gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
          Length = 448

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 203/463 (43%), Gaps = 36/463 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+   D +  I+     +V    +  + +DSR +   + FFAI     +G+++I   
Sbjct: 21  MKILFNILDEIFGIK----SVVETNEIGHVVMDSRKVQKGDLFFAI----NNGNNYIEDV 72

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA LVV +             V  V++ + ++ KLA   R      IIAITGS GKT
Sbjct: 73  LNKGAALVVADNYKGNDKR-----VIKVENTVESMQKLAQKYREALDIKIIAITGSNGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS    T   +G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L++
Sbjct: 128 TTKDMMYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDSKYEVAVLELGMSGFGEIDLLSN 187

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I VIT I  +HL      E +  AK E+ + + K   I    DD F ++L     
Sbjct: 188 IAKPDIGVITNIGDSHLEFLKTRENVFKAKTELIKYITKENLIIF-GDDPFLKIL----- 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GIK     G   N ++Q++ +    +    E  L     EV  +  G H   N  M +
Sbjct: 242 -DGIK----VGYGDNNNYQIKNFMDSDKGLSFE--LDENKYEVALN--GKHNCLNAAMAV 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +    +     L        R ++      +     I+++YNA+P S+  ++   
Sbjct: 293 VIGKKMGIPYEEIKAGLKNLELTPMRFQKIE----KENIVYINDAYNASPISVSFSLETF 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++  + +  +I VLGDM E+GE    +H ++ +     +   ++L G  +    + +  
Sbjct: 349 DKL--YNDTLKIVVLGDMLELGENEIEYHKNILDKALNIHTDKIYLYGERMRKALEYIKE 406

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +   + +    + +   I         V++K S       +I 
Sbjct: 407 NREKITHFTEKEEIKKAILKEQRK-ISVLLKGSRGMKLEEIIE 448


>gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
 gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
          Length = 440

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 198/446 (44%), Gaps = 32/446 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+ KG    +V+    A      I    V+
Sbjct: 16  VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEKEYADPTDKRI--ILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+   K +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  D +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+     +FLN  ++    + A+        I ++G+   AD Q +       
Sbjct: 194 KGELYDYLKAHDALLFLNESNADLTEMAAQRE---FDRIITYGQDDTADVQGKVISCAP- 249

Query: 269 QSWMEVQLQ----------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             +++ + Q              EV  H IG +   NML  + I             AL 
Sbjct: 250 --FLKFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHFGVTPQQINHALE 307

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +    A N+    LI ++YNANP+SM AAI     +       ++A+LGDM
Sbjct: 308 SYIPHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFRLMEVEH---KMAILGDM 360

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G  S   H  + E+L    +++VWL G         L  +      + +D +   I 
Sbjct: 361 RELGAASAEEHQKVVELLKAAGLTNVWLVGEEF------LKTNTDFRKFKNVDEVKAEIA 414

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
               +   +++K SN    + L +LL
Sbjct: 415 HHQPENHYILIKGSNGIRLFELPDLL 440


>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
 gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
          Length = 468

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 131/473 (27%), Positives = 200/473 (42%), Gaps = 29/473 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           W F  +  A+    I  V QG       V  I  DSR +   + F  + G  +D HDF  
Sbjct: 6   WAFEHIATALSKLLIAQVNQGVPELPSAVRLIQTDSRLVEKGDLFVCLIGERFDAHDFAG 65

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++ GA  +V N      +  L I  F V+D   AL  LA A R +    ++A+ GS G
Sbjct: 66  QVMKSGAAALVTNR-----VLDLPIHQFVVNDTRLALGALASAWRQQFDLKVLAVVGSNG 120

Query: 119 KTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT+KEML     +     +     G+ NN IGVP TL ++       + E+GM+H GEI
Sbjct: 121 KTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVPQTLLKLRPQHQMAVIEMGMNHPGEI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  LV+P + ++T     H      +  +A+     F  L   G       D F    
Sbjct: 181 DYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTHLSSNGCAVFPVSDEFDACW 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A S     K+   FG    ADF++   +    QS + ++     +E+  + IG H   N
Sbjct: 241 QALSTG---KSTLRFG--SGADFEILPPRSDFGQSAVVLRALDAPIELRPNFIGEHNYAN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                          +     L+ F P  G   R + ALN     LI++SYNANP S+ A
Sbjct: 296 AAGAAAAAHAAGCTHEAIQAGLNAFQPVNG---RLQVALNTPSILLINDSYNANPDSVNA 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A  VL Q +    G  + VLGDM E+G  S  +H ++        + H++  G       
Sbjct: 353 ASKVLGQQA----GSTLLVLGDMGEVGNQSDEYHAEVGSYAKQAGVKHLYALGDATTHTV 408

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEE 467
            A        + +T++ L     ++   G   V+VK S      R++  L++ 
Sbjct: 409 LAFGEG--AMHFKTIETLIENTMNTTKQGRWSVLVKGSRFMKMERVVQALVQH 459


>gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 503

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 197/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  V+
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVARGASGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +LS+P   VD+   AL ++A   +      ++A+TGS GKT+ K +L   
Sbjct: 67  VER----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   +      YA  G+ NN IG+PL +   P D D  I+E+G    G+I +LT + +P
Sbjct: 123 LTEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPAGGVAVINADDAFGMWFEQQLQSQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  FG   +A+   R+ +     +   +       ++     G H   N L   G+
Sbjct: 243 QGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQARAVAG---RQIAQTLPNGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAQGEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGG 415

Query: 423 HVHYSETMDGLFLFIQSSL------------------VDGDV------------------ 446
            V    T   L   +Q+ L                   +  V                  
Sbjct: 416 RV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQEHAVNQEQQSPSVAALSGAASI 473

Query: 447 -VVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 509

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 139/513 (27%), Positives = 212/513 (41%), Gaps = 56/513 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+     G       P   V G +  DSR +     F A+ G   DGHDF  
Sbjct: 1   MIPL-SIGDIAAITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASI----------GSLSIPVFGVDD-------VLGALNKLAVA 101
            A+++GA  V+    +              G  +      +D       V+GAL+ LA  
Sbjct: 60  KAIEQGAVAVLAARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSNLARE 119

Query: 102 ARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
              R        I+ +TGS GKT+TK++L     +  +T A  GS+NN +G+P T  R  
Sbjct: 120 VTSRLAAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCD 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L
Sbjct: 180 EHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEAL 239

Query: 218 EK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCS-EQ 269
                 G   LN DD F   +  ++ A     +  +     ++ +A +     +     +
Sbjct: 240 PAAADGGVAVLNADDPFVASMAPRTQA----KVVYYSANRPQAADAQYYATDIELDDVAR 295

Query: 270 SWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                   G + M +     G H   N L           +   A +ALS          
Sbjct: 296 PSFTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPTVAARALSGHQTSSAH-- 353

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQS 387
           R      +   T+ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  +  
Sbjct: 354 RMDVRTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVE 413

Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV-- 442
            H  L  VLS Y+++H+   G   H +A+ +A     I       ++     +++ L   
Sbjct: 414 AHRILGSVLSKYHVNHLVAVGEGAHTVAMVEAAHAHGIQTELCPDIEAATAAVENILRVA 473

Query: 443 -----------DGDVVVVKSSNSCGFYRLINLL 464
                        DVV+VKSSN+   +R+   L
Sbjct: 474 PAGVEDWSARAAKDVVLVKSSNAQRLWRVAEQL 506


>gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
 gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
          Length = 461

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 211/470 (44%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P +   +L +  QG   G      V  ++ DSR+  P   F A+KG  +D HDF+  A
Sbjct: 1   MIPFY-LSELARKAQGTLSG--EDIEVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  + V+       G+ S+P     D L  L    +  R +  A I A+TGS GKT
Sbjct: 58  VLSGAAALGVSLG-----GNFSVPCVKCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L          G++NN +GVPLTL R+   +D+ I E G SH  +I+  + 
Sbjct: 113 TVKEMAYSILKQGFNAMCTNGNFNNDVGVPLTLLRLDEKLDYAIIEQGASHKEDIKRTSE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V+   AVIT +  AH+  F     +   K+EI +  L + G   +     + +  K   
Sbjct: 173 FVQADAAVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDY 232

Query: 240 HALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               ++  + +FG + +   ++ + K  S++    +  +G+S ++  + +G H AQN   
Sbjct: 233 KEAFLQGKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L  D       L      +GR +      N   FTLID++YNA+  ++ + I 
Sbjct: 293 AAALCLALGCDFKYIKPGLENTSSVKGRLQ----VKNFAGFTLIDDAYNASFNAVLSGID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            LS  +    G ++ V GDM E+G+ + S H  +  + +   I+ +   G       +  
Sbjct: 349 TLSSFA----GFKVMVFGDMGELGDEAVSLHEKVG-LYAKNKINLLLCLGPLSRHSVE-- 401

Query: 419 PRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLL 465
                  + ++ D L  F++  +    D  V++VK S++     + + L+
Sbjct: 402 KAGSIARHFDSHDALAAFLKDEVLKRHDNAVILVKGSHAMRMDLITDKLI 451


>gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 431

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 193/442 (43%), Gaps = 29/442 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEGDQR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHI
Sbjct: 72  VDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L K   I F+++D+ +   +           + S+G     D  +   +  
Sbjct: 192 KTKGELYDFLRKKDAITFIHHDNPYLMNISQ------GLNLISYGTED--DLYV-NGRIT 242

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +      G+  +V    IG +   N L  + I      +     +AL+ + P
Sbjct: 243 GNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALAEYTP 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G
Sbjct: 303 QNNRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFQNMTVPH---KMLILGDMRELG 355

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  + + +   +   VWL G      + +            +  +   +Q    
Sbjct: 356 ADSPAEHQKIVDYIKESDFEKVWLVGEQFATSEHSFKT------YADVQEVIKDLQEDKP 409

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN       +  L
Sbjct: 410 KGYTILIKGSNGIKLSSTVEFL 431


>gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
 gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
          Length = 434

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 128/434 (29%), Positives = 206/434 (47%), Gaps = 24/434 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I     FFA+KG  +DG+ +   A+QKGA   VV+   VA+           +
Sbjct: 18  VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDPTVANGDR----FLLFE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R      ++A+TGS GKTTTKE++   LS    TYA  G+ NNHIGV
Sbjct: 74  DGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLNNHIGV 133

Query: 150 PLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           PLT+  + P   +  + E+G +H  EI  L+ + +P   +IT I  AHL  F G+  I  
Sbjct: 134 PLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQPTHGLITNIGKAHLEGFGGVSGIIK 193

Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+F+ L +K GT+F+N        + +K  A G    Y    S+N+       ++  
Sbjct: 194 GKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAFGEIVFYC---SENSPINPTLIEENP 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V        V  H  G +   N+   L +      +   A +A++ + P   R 
Sbjct: 251 N-----VVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADAYEAVATYEPDNNRS 305

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +    +G  T+I ++YNANP+SM AA++   ++      R+I +LGDM E+G+ +  
Sbjct: 306 QIVK----KGTNTVIMDAYNANPSSMAAAVANFGRMEA---ARKILILGDMFELGDAAPE 358

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H+ L + ++      V L+G  +     ALP++   +Y      L  +I  +  +    
Sbjct: 359 EHLALGKQIAGEKFDVVILAGKLMQHALPALPKA---YYFPDKFSLHNWIMDNPQENTHF 415

Query: 448 VVKSSNSCGFYRLI 461
           ++K S       ++
Sbjct: 416 LIKGSRGMSLETVL 429


>gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
 gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 207/460 (45%), Gaps = 16/460 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  D+L A      +G      +  + IDSR++ P   F  + G   DGH F   AV+K
Sbjct: 3   MTLSDILAATGAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +  +         PV  V D + AL +LA A R R  A ++A++GS GKTT K
Sbjct: 63  GAAAVLADRPLAGLPEGT--PVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    L  +  T     ++NN IG+PL++     +    + ELG+S  GE+  L  +  
Sbjct: 121 ELTAAILGKVGPTAKNYKNFNNRIGLPLSMLEAGENDALWVMELGISAPGEMAPLASIAE 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVI  + PAHL     +  +A+ K  +F  L   GT   + D        A++   G
Sbjct: 181 PDVAVIHNVGPAHLQALGDVAGVAAEKTFLFRSLRPGGTALASMDYPEL-WDAARAAFPG 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           ++ + +  K + A ++ +     SE      ++L    +EVV    G H A+N+L     
Sbjct: 240 VRGMST--KGQAAPYRAKYLGAISEGRGRFFLKLDDLELEVVTPLTGGHFAENILAAAAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             IL A        L+     E R    R    QG +TLID++YNANP SM+ AI+  ++
Sbjct: 298 ARILGAGEPEIAAGLATAVMPEQRFFCRR----QGCYTLIDDTYNANPLSMRRAIAAAAE 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
            +       + VLG+M EMG  +++ H  L E  +    + V+  G H  A+ + L RS 
Sbjct: 354 TAQARP--LVLVLGEMREMGAHAEAEHGKLGEAAAASGANAVFYHGAHAEAVGEGLTRSG 411

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                   +T D     +      G V + K S S     
Sbjct: 412 YAGRFAVVDTPDAFLGALAPMGFGGGVFLFKGSRSMRMEE 451


>gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
 gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
          Length = 467

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 212/475 (44%), Gaps = 24/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +  ++  AI G  +       +     +  DSR       FFA++G   DGH F 
Sbjct: 1   MIEL-SIAEIAAAIGGELVDGTDGKRRLPPVAVQTDSRLSTAGSIFFALRGETTDGHLFA 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113
             AV+ GA L+V           + +    V+D + AL  LA A     R   +  ++A+
Sbjct: 60  HTAVENGATLIVAER-----ALDIDVAQIIVNDGVTALQALARAVVARVRENGQLKVLAV 114

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK ML   L    +T A  GS+NN +G P+T+  +     + + E+G   +G
Sbjct: 115 TGSNGKTTTKNMLRTILEREGETVAPKGSFNNDVGAPITMLGVTNSSKYLVVEMGADGIG 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +I  L  +V P + ++  +  AH+  F      A AK+E+   L    T  LNYDD    
Sbjct: 175 DITRLQSIVMPDVGIVLMVGLAHIGKFGDAATTALAKSEMVTALPPQSTAVLNYDDGRVR 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  ++ A    T+  FG   ++D    + +  +  +  ++ +  + + V    +G H  
Sbjct: 235 AMAPQTEA----TVNFFGLDSHSDVWADEIEASARGTAFDLHVADEVVPVQLRILGEHHV 290

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +     L   V  +  AL      E    R       G  T+I+++YNA+P SM
Sbjct: 291 TNALAAITAARALGIPVQRSAVALESIDRAERW--RMELLEAPGGITVINDAYNASPDSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AA+  L Q+    E R +AVLG++ E+GE +   H  +  ++   N+  + + G     
Sbjct: 349 AAALKTLVQV-VGPENRSVAVLGEIAELGEYANEEHDRIGRLIVRLNVQKLIVVGHAARH 407

Query: 414 LKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + +A              + ++  +  ++  L  GDVV+VKSSNS G   L + +
Sbjct: 408 IHNAAGLEGSWDGESVLVDNVEEAYAVLREELRGGDVVLVKSSNSAGLRHLGDRI 462


>gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 435

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 31/466 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ + ++G  IG    G VN I  DSR++     F  ++G   DGH FI  A Q G
Sbjct: 1   MRAEEVAKIVKGKLIG---NGKVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    +    G     +  V +   A   L    R     T IAITGSVGKTTTKE
Sbjct: 57  ASGTLSERTLPIPEGKF---LIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +LT   S   KTY  + S+NN +G+  TL+ +P+D +  I ELG +  GEI  L  +V+P
Sbjct: 114 LLTHVFSKFFKTYRNVKSFNNILGLTYTLSNLPLDTELYIQELGTNRQGEIPELVEIVKP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+V+T +  AH + F  I +I   K  I EG        L+     F+           
Sbjct: 174 EISVVTAVEKAHTAGFKDISDIVKEKLSITEG------AILSIVPIQFKEFSK------S 221

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   +FG  +  D +L   +    ++   ++  G+ ++      G  +  + L+ +G+  
Sbjct: 222 KETITFG--REGDIKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAE 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   +++   + +  F P E R    +         LID+SYNANP SM+ AI VLS   
Sbjct: 280 VFKVNIEKVSELIRTFTPPEMRLTVEQL----NKVILIDDSYNANPKSMENAIKVLS--- 332

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              E  ++A++G+M E+GE S+  H  + E+L+   +  +   G    +           
Sbjct: 333 -LQELPKVAIIGEMLELGEESKKEHEKIGELLNHAKVETLIAYGKETESTFKVFKGKKS- 390

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            Y  + + L  FI++    G  V+VK S      ++  ++ E + +
Sbjct: 391 -YFTSQEELIKFIKTFHFQGKAVLVKGSRGNRLEKIARIIRERYKS 435


>gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
 gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/471 (24%), Positives = 190/471 (40%), Gaps = 23/471 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MMTLAKALELIQTHIPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       + +  +    V D L AL  LA A R +    +IA+TGS GK
Sbjct: 61  AQ----AAGAVAAIASHGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116

Query: 120 TTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           TT  +M+   L +      +   A  G++NN IG+PL L RM       + E+GM+H GE
Sbjct: 117 TTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L K G       D +  L
Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGDEYTPL 236

Query: 235 LKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               S     +    FG++ + A          +      +        V  H  G H  
Sbjct: 237 WTELSAG---RPSLMFGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIAGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            +    + LS F P  GR +     +     T++D+SYNANP S+
Sbjct: 294 RNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNANPDSV 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI+VL+++        + VLGDM E+G+    FH +   +     I+H +  G     
Sbjct: 354 AAAIAVLAELPAPQ----LLVLGDMGEVGDDGPQFHAEAGALAQQAGIAHFFALGDQSAF 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              A        + ++M  L   + + L     V+VK S      +++  +
Sbjct: 410 AASAFGSGAR--HFDSMSALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSI 458


>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 202/468 (43%), Gaps = 14/468 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     +++      +    +    GI  D+R+    + F A+KG  +D H+F+  A
Sbjct: 1   MRAM-DLQTIVKVTGAKILS-QKETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKA 58

Query: 61  VQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           V++GA  ++V+ +            +  V D L AL KL   AR  S A I+ ITGS GK
Sbjct: 59  VEQGASGLLVHEENALIEKLKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE     + S    +   GS+NNH GVP TL ++P + D  I E+GM+H GEI  L 
Sbjct: 119 TTTKEFTAALVGSSMDVHYNKGSFNNHWGVPFTLLQLPPNKDVAIIEMGMNHAGEITELV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H+  P + V T +  AH+  F  IE++A AK EI+E          N D++    +  K+
Sbjct: 179 HIAEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYVKA 238

Query: 240 HALGIK-TIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                K  I +F  +   AD  L        +  ++  + G++        G     N++
Sbjct: 239 RDKFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLM 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   +           +     +    R +    +    +I ++YNANP SMKA I
Sbjct: 299 AAASVGLAVGMTPAQV---WAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALI 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +  ++    GR++ V G M E+G  S + H +L   +       V+  G    A    
Sbjct: 356 DNMKLLT--VPGRKVGVFGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDDADAFAKG 413

Query: 418 LPRSIHVHYS----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           L  + + + +    +  D     +   L  GD+ VVK+S      R +
Sbjct: 414 LSSAGYKNLALIEKDYKDSSGQDLAGFLKTGDIAVVKASRGTKLERFV 461


>gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
 gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
          Length = 433

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 199/436 (45%), Gaps = 19/436 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  ++G+ F   A++KG    +++    A  G+  +    V 
Sbjct: 16  ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEGNDRL--ILVK 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  K+A   R      +I ITG+ GKTT+KE+++  LS         G++NN +GV
Sbjct: 74  DALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNVGRAHLEGFGSFEGVKLT 193

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+     +FLN  +     + A+      + I S+G++   + Q         
Sbjct: 194 KGELYDYLKANDCLLFLNESNPDLSEMAAQ---RNFERIISYGQNDMVNVQGEIIDCAPF 250

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +   ++  +  EV+ H +G +   NML  + +    +        AL  + P   R +
Sbjct: 251 LHFRWREVGSEWKEVMTHLVGAYNLDNMLAAIALGLHFSVAPQQICHALETYVPSNNRSQ 310

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 N+    L+ ++YNANP+SM AAI     ++      ++A+LGDM E+GE++   
Sbjct: 311 LTETVHNK----LVVDAYNANPSSMVAAIENFRLMNVEN---KMAILGDMRELGEVTDVE 363

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + E L    +++VWL G +          +        ++ +   I  +   G  ++
Sbjct: 364 HQKVVEQLKAAGLTNVWLVGENFG------KTNTDFKKFHDVEEVKAEIAKAQPQGHYIL 417

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN    + L  LL
Sbjct: 418 IKGSNGIKLFELPTLL 433


>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 198/471 (42%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L     +  A  G + G   +  V G  +IDSR + P   F AI G H DGH +   
Sbjct: 1   MIEL-DLEGIAAATGGTAHG---RARVTGPATIDSRDVPPGGLFVAIPGEHVDGHAYAEA 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVG 118
           AV+ GA  V+           ++ P   V D   AL  LA A   R  + + + +TGS G
Sbjct: 57  AVRAGAAAVLCTRP-------VAAPHVLVPDATVALGLLARATHDRLDRLSTVGLTGSSG 109

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   L  +  T A  GS+NN +GVPLT+ R      + + E+G    G I  L
Sbjct: 110 KTSTKDLLAHVLEPLAPTVAPTGSFNNELGVPLTVLRADPSTRYLVVEMGARGRGHIAAL 169

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+  +  AH   F  +++ A AK E+ E L   GT  LN DD     +  +
Sbjct: 170 CRISPPDVAVVLNVGTAHQGEFGSVDDTAVAKGELVEALGPGGTAVLNADDPRVAAMAGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       + +FG  +  D +L       +    + +         V   IG H   N  
Sbjct: 230 TAG----QVLTFG--RGGDVRLVDLLTDAAGHPRITLAHGPDRETFVLPQIGGHHGSNAA 283

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            T  +   L  D+ T    L+    +                 ++D+SYNANP S+ AA+
Sbjct: 284 ATAAVAVALGVDLATVAARLATATVRSPHRMARHVRP--DGLVVVDDSYNANPESVAAAL 341

Query: 358 SVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             ++ + +P   GR + VLG+M E+G  S   H  +  +     I  V   G     + +
Sbjct: 342 RSVADLGAPGDGGRTVVVLGEMLELGADSADHHRRIGALARELGIGLVVAVGPGASPVVE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                        +      +   +  GD+V+VK+S S    R++  LL +
Sbjct: 402 GA--GALATGVPDVAAAVELLHEQVGPGDLVLVKASRSARLERVVTALLAD 450


>gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
 gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
          Length = 475

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/471 (24%), Positives = 190/471 (40%), Gaps = 23/471 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MMTLAKALELIQTHIPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       + +  +    V D L AL  LA A R +    +IA+TGS GK
Sbjct: 61  AQ----AAGAVAAIASHGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116

Query: 120 TTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           TT  +M+   L +      +   A  G++NN IG+PL L RM       + E+GM+H GE
Sbjct: 117 TTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L K G       D +  L
Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGDEYTPL 236

Query: 235 LKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               S     +    FG++ + A          +      +        V  H  G H  
Sbjct: 237 WTELSAG---RPSLMFGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIAGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            +    + LS F P  GR +     +     T++D++YNANP S+
Sbjct: 294 RNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNANPDSV 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI+VL+++        + VLGDM E+G+    FH +   +     I+H +  G     
Sbjct: 354 AAAIAVLAELPAPQ----LLVLGDMGEVGDNGPQFHAEAGALAQQAGIAHFFALGDQSAF 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              A        + ++M  L   + + L     V+VK S      +++  +
Sbjct: 410 AASAFGSGAR--HFDSMSALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSI 458


>gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
 gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
          Length = 478

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 201/471 (42%), Gaps = 33/471 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +L++ + G  I   P       + I  DSR + P   F  + G  +DGH F+  A+
Sbjct: 1   MRLANLVE-LWGRPIEAAPADQAASFSRIGTDSRELEPGCLFVPLVGERFDGHGFLAAAL 59

Query: 62  QKGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           ++GA  V+   D +++  + ++       ++ VDD   A  +L    R +  A +IA+TG
Sbjct: 60  EQGALAVLAQRDRLSAEQAEALVRSSGGRIWLVDDTQAAYQELGRLWRRQGSAPVIAVTG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTT+E++   LS +    A +G+ NN IGVPLTL +   +    + E+GM  LGEI
Sbjct: 120 SAGKTTTRELIRAVLSPLGPVLASVGNENNDIGVPLTLLKAGGEHRAVVVEMGMRGLGEI 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L+    P I VIT I  AH+      E IA+AK EI   L   G + +   D    LL
Sbjct: 180 ERLSRCAEPDITVITNIGTAHIGRLGSREAIATAKCEIVAALRPDGLVVIPAGDP---LL 236

Query: 236 KAKSHALGIKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +A   A+    +       +           +LR         W   +   +        
Sbjct: 237 EASLAAVWSGRVIRVALQDDPTGPQPGQLLGRLRAGTDGDRLIWGRAEPGAREHSTELPL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A+N+L+ L + S L  D     +         GR +R R     G   ++DE+YN
Sbjct: 297 PGRHNARNLLLALAVASELGVDPLQLSRLEVAL--PGGRSRRIRL----GEIEVLDETYN 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P +M AA      +     GRR A LG M E+GE S   H  + E      +  + + 
Sbjct: 351 ASPEAMLAA----LDLLASQGGRRFAALGTMLELGEQSTELHRRVGERARALGLDGLVIV 406

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             G    AL         +   ++ +     +   L  GD +++K+S    
Sbjct: 407 AGGAEGEALLAGAAGLPRLQRVDSPEDAAQTLLGWLEPGDHLLLKASRGVA 457


>gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 428

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 116/463 (25%), Positives = 199/463 (42%), Gaps = 38/463 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+   D +  I+     +V +  +  + +DSR +   + FFAI     +G+ +I   
Sbjct: 1   MKILFNILDKIFGIK----SVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDV 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +             V  V+D +  + +LA   R      +IAITGS GKT
Sbjct: 53  LEKGAALVIADNYKGNDKR-----VIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKT 107

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS    T   +G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+ 
Sbjct: 108 TTKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSS 167

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P I VIT I  +HL      E +  AK E+ + +     I    DD F + L     
Sbjct: 168 IVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIVF-GDDPFLKDLNG--- 223

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G   N ++Q++ +    E    E+    +  +      G H   N  M +
Sbjct: 224 -------IKVGYENNNNYQIKNFTDSDEGLSFEM----EEKKYTVSLNGKHNCINTAMAI 272

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +    +     L        R ++      +     I+++YNA+P S+  ++   
Sbjct: 273 VIGKKMGVSYEEISNGLKNLELTPMRFQKIE----KENIIYINDAYNASPISVSFSLETF 328

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
            ++  + +  +I VLGDM E+GE    +H ++ E   + +   ++L G  +  ALK    
Sbjct: 329 DKL--YNDALKITVLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYGERMAKALKVIQG 386

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLI 461
               + +    + +   ++     G   V++K S       +I
Sbjct: 387 NKEKITHFTNKEDIKNILEKE--HGKTAVLLKGSRGMKLEEII 427


>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
 gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
          Length = 468

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 195/468 (41%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T       I G  +        + +S DSRS+   + F A+KG  +D HDF+     +
Sbjct: 3   MLTLQQAAALIPGAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ +   +    S+P   V D    L  LA   R R    ++A+TGS GKTT K
Sbjct: 63  GANAALVSREGAPA----SLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        +  G++NN IG+PLTL R+       + ELGM+H GE + L  
Sbjct: 119 EMIASIFAAAVGIDARLSTAGNFNNDIGLPLTLLRLSAAHRLAVIELGMNHPGETQTLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD +  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHASVIHALAPDGVAVFPADDKYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F  +                  + ++      EV    +G H A+N L   
Sbjct: 239 GNA---ILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARNALAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    ++     L  F P +GR +  R A+       LID++YNANP SM+AAI V
Sbjct: 296 AAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q +      R+ V+G+M E+G+   +FH ++        I  ++ +G        A  
Sbjct: 356 LAQQASP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATGDATRDACAAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   H+ +    L     +       V+VK S      R+++ L  +
Sbjct: 412 DTAR-HFDDVGALLAALDAAGFGAAATVLVKGSRYTRMERVVDALTNQ 458


>gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
 gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
          Length = 504

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/502 (24%), Positives = 196/502 (39%), Gaps = 54/502 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G    +  P   V G +  DSR +     F A+ G   DGHD   
Sbjct: 1   MIPM-TLARIAEIVGGELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----------- 107
            AV+ GA  V+           + +P   V    G     A+A    +            
Sbjct: 60  SAVEAGAVAVLAARP-------VGVPAVVVSPAPGTGPSKAMALEHDTDGSGAAVLAALA 112

Query: 108 --------------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
                          T++ +TGS GKT+TK++L   L  +    A  GS+NN +G P T 
Sbjct: 113 KLARASVDDLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTA 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R      F + E+     G I  L  +  P I V+  +  AHL  F   + IA+AK E+
Sbjct: 173 LRADAGTGFLVLEMSARDRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGEL 232

Query: 214 FEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-Q 269
            E L      G   LN DD     +  ++ A     +   G+S++A  +          +
Sbjct: 233 PESLPSADDGGVAILNADDPLVVAMAPRTSA----RVVLVGRSESAHVRATDIVLDERAR 288

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   +     S+ V     G H   N L    +     AD+D   +ALS      G  +R
Sbjct: 289 ARFTLTTAAGSVPVELAVHGEHQVGNALAAAAVALECGADLDQIARALSAAAAVSG--RR 346

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQ 386
                     T++++SYNANP SM+AA+  L  ++        R  AVLG+M E+G  S 
Sbjct: 347 MDVRDRPDGVTVVNDSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPESV 406

Query: 387 SFHIDLAEVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSS 440
             H  +       ++S + + G      A+                   + G    ++  
Sbjct: 407 VEHDAIGRFAVRLDVSRLIIVGTGRPARAMHQGAVMEGSWGEESILVPDIAGAVALLEKE 466

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
           L  GD+V+VK+S S G + + +
Sbjct: 467 LAPGDLVLVKASQSIGLWEVAD 488


>gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 128/439 (29%), Positives = 214/439 (48%), Gaps = 30/439 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+      FFA+KG +++G+++   A+  G    +V+    A+  +    +  V+
Sbjct: 16  VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVDESKYATRPN----IILVE 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L KLA   R + K  +I ITG+ GKTTTKE++T  LS      A  G+ NNHIGV
Sbjct: 72  DCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELITSVLSQEYNVLATQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  I E+G SH+GEI+ L+ +  P+  VIT I  AH+  F   E +  A
Sbjct: 132 PLTLLRIKKEHEIAIIEMGASHVGEIKVLSEMAMPNYGVITNIGHAHIEGFGSYENVIKA 191

Query: 210 KAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQ 265
           K E++E +   + G IF++YD+S    +       GI +IY +G  ++     ++   + 
Sbjct: 192 KGELYEYIRSTRDGKIFIDYDNSLLREMSE-----GITSIY-YGLEEDLFISGKVLSIRP 245

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E    E +   +  +V  + IG +   N L  + I   L        KA+  + P   
Sbjct: 246 FLE---FEWKFGTRRNKVKTNLIGEYNLSNALAAITIGKYLGVKASLICKAIEEYQPTNN 302

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N     LI ++YNANP SM AA+     +  +    ++ +LGDM E+G  +
Sbjct: 303 RSQLKETDRN----MLIIDAYNANPTSMHAALENFDHMDVNH---KVLILGDMKELGPDT 355

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +A+ +S +N   V   G +   +    PR       + +D L  +++ + +   
Sbjct: 356 DLEHQKVADYVSHHNFDRVIFVGDNFSRIITDYPR------FKDLDSLKYYLKENPIADS 409

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S      R I++L
Sbjct: 410 YILLKGSRGVQLERCIDVL 428


>gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 446

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 211/449 (46%), Gaps = 32/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G++F   A++KG    V++                V+
Sbjct: 16  VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQKEYQIQQDER--YILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    II ITG+ GKTTTKE+L   L+     +   G++NN IGV
Sbjct: 74  DCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  +V P  A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           KAE+++ +   +  G +F+N D+   + +  ++H   +  I S+ +++      +  K C
Sbjct: 194 KAELYDYMEVNKPNGKVFINQDNPHLQEMF-QAHCPHVHRI-SYSQTQQTGVSYQG-KIC 250

Query: 267 SEQSWMEVQLQ-----------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           S   ++  Q +            +  EV  H +G +   N+L  + I   L         
Sbjct: 251 SNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAISIGHYLGVQPHEINH 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+ + P   R +      N     LI ++YNANP SM+AA+   +Q+       ++A+L
Sbjct: 311 ALTHYTPSNNRSQLEVTKHNN----LIVDAYNANPTSMEAALVNFAQMQVAP---KMAIL 363

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+GE+S + H  +  +L+   I  +WL G           +       + ++ +  
Sbjct: 364 GDMRELGEVSVAEHQKIINLLNTLPIQQIWLVGEEFGKTTTTFQK------YKNIEEVKE 417

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            I+     G  +++K SN    ++L  LL
Sbjct: 418 TIRQQQPQGFYILIKGSNGIKLFQLPELL 446


>gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
 gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
          Length = 471

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 117/467 (25%), Positives = 192/467 (41%), Gaps = 20/467 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D + F+  
Sbjct: 1   MMTLQQALELIQSHIPQARLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDANQFLAQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A                 + +  +    V D L AL  LA A R R    +IA+TGS GK
Sbjct: 61  AR----EAGAAAALAHGGLEAAGLAGIEVPDSLAALGALATAWRARFALPLIAVTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TT  +M+   L +     A    G++NN IG+PL+L RM       + E+GM+H GEI  
Sbjct: 117 TTVTQMVASILRAHAGEAALATRGNFNNSIGLPLSLMRMTAQHRVAVLEMGMNHPGEIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      H      +E +A     +   L   G       D++  L + 
Sbjct: 177 LAAIGQPTVALVNNAQREHQEFMHTVEAVARENGSVLLSLPADGVAVFPAGDTYTPLWRE 236

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + A   +    FG+S + A    R      +     +        V  H  G H  +N 
Sbjct: 237 LAAA---RQCLLFGESADGAQVHARDALWLGDAWQFTLVTPEGEAPVRLHIAGRHNVRNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L            +    + LSVF P +GR +    ++     T+ID+SYNANP S+ AA
Sbjct: 294 LAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRTVTVIDDSYNANPDSVAAA 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL ++        + VLGDM E+G+    FH +   +     I+ ++  G    +   
Sbjct: 354 IEVLRELPAPQ----LLVLGDMGEVGDQGPQFHAEAGALARSLGIARLFTLGAQSTSAAT 409

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           A        + E M  L     ++L +   ++VK S      +++  
Sbjct: 410 AFGAGAR--HFEDMASLQQAACAALPEVGSILVKGSRFMKMEQVVQA 454


>gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
          Length = 432

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 195/465 (41%), Gaps = 33/465 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++G  +G    G   G+  DSR IA  E F  +KG   DGH FI  A  +G
Sbjct: 1   MDAKTLAEIVKGELVG---SGRFGGVHFDSREIAKGELFIPVKGRR-DGHLFINDAFSRG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    +    G   +    V D L A  +LA   R + K T+I +TGSVGKTTTKE
Sbjct: 57  AAGTLTERRVELPPGKFQV---VVRDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L      Y    S+NN +GV  TL+ +P    F + ELG +  GEI  LT  V+P
Sbjct: 114 LLGKLLGR--NCYTSKKSFNNLLGVCYTLSNLPESARFLVQELGTNSPGEIARLTKTVKP 171

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+AV+TT+  AH   F  +E I   K  I EG E      +         LK    A   
Sbjct: 172 HVAVVTTVGKAHTQGFKTLEAIKKEKLSITEGAE---VAVVPV------ELKEMCRADKC 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T+   G       +++ W     ++   ++   + +++     GY +     +   +  
Sbjct: 223 LTVGRGGT-----VEVKNWGIKGGRTLFTLKAGKEELQLESSIPGYSIVNAAAVAAAVAL 277

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +   +K +  F P + R    R        TLID+ YNANP SM+ A+ VL+   
Sbjct: 278 ELGIPLRELVKVVREFSPPKHRCSVERLPNG----TLIDDCYNANPVSMENAVRVLASF- 332

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G ++AVLG+M E+GE     H  L E+L+   I  +   G                
Sbjct: 333 ---NGPKVAVLGEMLELGEEGPKEHRKLGELLNALGIEELIAFGAQTEETVKTFKG--KG 387

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            +    +    FI      G  V+VK S        + L+ E   
Sbjct: 388 FHFTNREEFIKFISEFPFRGKTVLVKGSRGNRLEEAVELIRERLK 432


>gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
 gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
          Length = 446

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 211/448 (47%), Gaps = 30/448 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G++F   A++KG    V++                V+
Sbjct: 16  VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQKEYQIQEDER--YILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R      II ITG+ GKTTTKE+L   L+     +   G++NN IGV
Sbjct: 74  DCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L  +  P  A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLCLKPEHEMAVVEMGASHPGDIQSLVTVAEPDYALITNVGRAHLQGFGSFEGVMRT 193

Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQ 265
           KAE+++ +   +  G +F+N D+ + + +  ++H   +K    + ++   D  +R +   
Sbjct: 194 KAELYDYMQQHKPQGLVFINQDNEYLKEMF-RTHCPNVKA-MGYAQTDRPDISIRGEVVS 251

Query: 266 CSEQSWMEVQL---------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           C+       +            +  EV    IG +   NML  + I S      +    A
Sbjct: 252 CAPYLKFRWRKTAAAPSPREDTRWHEVQTQLIGAYNLDNMLAAITIGSHFGVSDEQINHA 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ + P   R +    A N+    LI ++YNANP SM+AA++   ++      +++A+LG
Sbjct: 312 LAGYVPSNNRSQLQITAHNK----LIVDAYNANPTSMEAALTNFQRMDVP---KKMAILG 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G++S + H  + ++++  N+  VWL G         L +       +  + +   
Sbjct: 365 DMRELGDVSMAEHQKIVDLIATLNLDKVWLVGEEFGRTNTTLRK------FKDTEAVREA 418

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++     G  +++K SN    ++L  LL
Sbjct: 419 LRQEPPQGYYILIKGSNGIKLFQLPELL 446


>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
          Length = 466

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 209/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++L A      +G      +  + IDSR+++P   F  I G   DGH+F + AV KG
Sbjct: 4   TLSEILAATGAVGDVGERGNPDIEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +  +         PV  V D + AL KLA A R R++A ++A++GS GKTT KE
Sbjct: 64  AAAVLADRPLAGLPEGT--PVLLVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVKE 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L+ +  T     ++NN IG+PL++          + ELG+S  GE+  L  +  P
Sbjct: 122 LTAAILAKVGPTAKNFKNFNNKIGLPLSMLEAGETDRLWVMELGISAPGEMAPLAAIAEP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVI  + PAHL     +  +A+ K+ +F  L   G    + D  + EL  A       
Sbjct: 182 DVAVIHNVGPAHLEALIDVAGVAAEKSRLFAALRPGGVALASMD--YPELWAAAKAVRPD 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               S  K  +A ++ +     SE      ++L G  +EVV    G H A+N+L      
Sbjct: 240 VRGMSV-KGGSAPYRAKYLGALSEGRGRFFLRLDGLELEVVTPLTGGHFAENILAAAASA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L A  +     L      E R    R     G +TLID++YNANP SM+ AI+  +  
Sbjct: 299 RLLGATEEQIATGLESAVMPEQRFFCRR----HGCYTLIDDTYNANPLSMRRAIA--TAA 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                   + VLG+M EMG  ++  H  L E  +      V+  G H  A+ + L R  +
Sbjct: 353 EAAQGKPLVLVLGEMREMGAQAEDEHHKLGEEAAASGAKAVFYHGGHAQAVGEGLARKGY 412

Query: 424 ---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +T +     + S+ + G V + K S S      +  L
Sbjct: 413 AGLFAVVDTPEMFTQTVASAGLRGGVYLFKGSRSMRMEEYLAAL 456


>gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
 gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
          Length = 430

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 197/447 (44%), Gaps = 30/447 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + H++ + +     +       +  I  DSR+I+  + F  +KG   DGH+FI  A   G
Sbjct: 4   SLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK+
Sbjct: 63  AIATISEKEIEGH------PYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KTY   G+YNN IG+P T+  MP D +  I E+G  HLG+I  L+ + +P
Sbjct: 117 MIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A       
Sbjct: 177 RIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPAN------ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG  +    Q+ + K+  E+  +  +      ++     G + A N ++   +  
Sbjct: 231 QMTIRFGHDQE--LQVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGK 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I 
Sbjct: 287 LLAVAEEDIVDALENLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +    
Sbjct: 344 NNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPI 403

Query: 423 -HVHYS------ETMDGLFLFIQSSLV 442
             V++       +  D L   ++ +L 
Sbjct: 404 GKVYFFKKNQEVDQFDQLLAKVKDTLK 430


>gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
 gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
          Length = 433

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 204/464 (43%), Gaps = 35/464 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L Q  Q H +          I+ DSR       F A+KG  +DG+ F   A++KG
Sbjct: 1   MDISELYQIYQAHPV----------ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKG 50

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+V+    A  G        V+D L    +LA   R      ++ ITG+ GKTTTKE
Sbjct: 51  CAYVIVDEKEYAKEGEER--YILVEDCLTTFKELAREHRRHFDIPVVGITGTNGKTTTKE 108

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  L          G++NN +GVP TL R+  + +  + E+G SH G+IR L   V P
Sbjct: 109 LVSAVLGEKFNVMFTQGNFNNDVGVPKTLFRLSPENEIAVVEMGASHPGDIRKLVEYVEP 168

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALG 243
              +IT +  AHL  F   E +   K E+++ L      +F+N D+     +  +     
Sbjct: 169 TCGMITNVGRAHLQGFGSFEGVKKTKGELYDYLAANDALVFINADNEHLMQMAEQ---RN 225

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---HHGIGYHMAQNMLMTL 300
           I  + ++GK +N D             +++ + + +S +      H IG +   NML  +
Sbjct: 226 INRLITYGKDENCDVWGEVISCAP---FLKFRWRTESFDWHEVQTHLIGSYNIDNMLAAI 282

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I             AL  + P   R +    A N+    L+ ++YNANP+SM AAI   
Sbjct: 283 TIGLHFDVKPQQIDHALENYIPSNNRSQLEETAHNK----LVVDAYNANPSSMAAAIENF 338

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +       ++A+LG M E+GE+S   H  + + L    + +VWL G     +      
Sbjct: 339 RMMDVPH---KMAILGQMGELGEVSHEEHQKVVDQLQTAGLENVWLVGDEFKDI------ 389

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  + ++ +   ++++      +++K SNS   ++L  LL
Sbjct: 390 PCSYRKFQNVEEVKEALKANQPHDHYILIKGSNSVKLFQLPELL 433


>gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
          Length = 431

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 195/442 (44%), Gaps = 29/442 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDKR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHI
Sbjct: 72  VDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L K   I F+++D+++   +           + S+G     D  +   +  
Sbjct: 192 KTKGELYDFLRKKDAITFIHHDNAYLMNIAQ------GLNLISYGTED--DLYV-NGQIT 242

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +      G+  +V    IG +   N L  + I      +     +AL+ + P
Sbjct: 243 DNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTP 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G
Sbjct: 303 QNNRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH---KMLILGDMRELG 355

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  + + +       VWL G    A + +               +   +Q++  
Sbjct: 356 AESPAEHQKIVDYIKESGFEKVWLVGELFAASEHSFKT------YANAQEVIKDLQANKP 409

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN       +  L
Sbjct: 410 KGYTILIKGSNGIKLSSTVEYL 431


>gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
 gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
          Length = 427

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 212/450 (47%), Gaps = 27/450 (6%)

Query: 18  SIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           SI  +   F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++    
Sbjct: 2   SIIDLYDLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDY 61

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                       VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+   
Sbjct: 62  YIGERT----ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFN 117

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  A
Sbjct: 118 LLYTEGNFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRA 177

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F   E +   K E+++ + ++ G IF+  ++ + + +     A GI+ I ++G   
Sbjct: 178 HLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSI-----AKGIEQI-TYGNGD 231

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +A F   +   C        + QGK   V  H IG +   N+L  + +        +   
Sbjct: 232 DA-FASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERIS 290

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A++ + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +
Sbjct: 291 RAIAAYEPTNNRSQFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQPKA---II 343

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G  S   H ++ E +       V+L G H   +              T + + 
Sbjct: 344 LGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMV 397

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++   + G  +++K S+S G  +L ++L
Sbjct: 398 EELRKQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 511

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 138/510 (27%), Positives = 212/510 (41%), Gaps = 55/510 (10%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++   + G       P   V G +  DSR +AP   F    G   DGHDF   A+++
Sbjct: 5   TLKEIADIVGGSLDSVDDPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAEKAIEQ 64

Query: 64  GAGLVVVNTDMVASI----------GSLSIPVFGVDD-------VLGALNKLAVAARLR- 105
           GA  V+   ++              G  +      +D       V+ AL+ LA     + 
Sbjct: 65  GAVAVLAAREVGVPAIVVQPTGRIEGDGANADIYANDADGSAAAVVRALSDLAHYVTTKL 124

Query: 106 ---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                 +II +TGS GKT+TK+++   L +  +T A  GS+NN IG P T  R  VD  +
Sbjct: 125 TSEHDLSIIGVTGSAGKTSTKDLIATILRNDGETVAPPGSFNNEIGHPYTALRCDVDTKY 184

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---K 219
            + EL    +G I+ LT +  P I V+  +  AHL  F   E IA AK E+ E L    +
Sbjct: 185 LVAELSARGIGHIKHLTDIATPRIGVVLNVGTAHLGEFGSRENIAIAKGELVESLPDVSE 244

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCS-EQSWMEV 274
            G   LN DD F   +  ++ A     + ++  +      AD+        +  +    +
Sbjct: 245 GGVAVLNADDPFVAAMAKRTTA----KVVTYSSANPPAVGADYYATNITLDNVARPSFTL 300

Query: 275 QLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              G K + V     G H   N L            V++   A S+   +     R    
Sbjct: 301 HAPGVKPVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESV--ADSLSGHRNASAHRMDVH 358

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                 T+I++SYNANP SM+AAI+ L    S   + R IAVLG+M E+G+ +   H  L
Sbjct: 359 TRADGVTIINDSYNANPDSMRAAIAALGYTTSGRPDARSIAVLGEMGELGDDAIEEHYSL 418

Query: 393 AEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSL---VDG-- 444
              L+ +++  + + G           A  R I+   S  +D     I+  L     G  
Sbjct: 419 GAELAKFDVHTLIVVGETANGEAMASAAAERGINTMVSRDIDEAIWHIEDVLNTPPAGVE 478

Query: 445 --------DVVVVKSSNSCGFYRLINLLLE 466
                   DVV+VK+SN+   + +   LL 
Sbjct: 479 DWSAREMKDVVLVKASNAQRLWLVSERLLN 508


>gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
 gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
          Length = 474

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 120/471 (25%), Positives = 200/471 (42%), Gaps = 20/471 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L  A    ++         G  IDSR +     F A  G + DG+DF   AVQ GAG
Sbjct: 6   VNNLAAATGARTVTGEADQVCRGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAG 65

Query: 67  LVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            VV+  +  A +          +   DD    L +LA   RL     ++ ITGS+GKTTT
Sbjct: 66  AVVMTREPEAELVSLAQDKGCAILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTT 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L   L+   + +A  G++NN IG+PLT+   P D +  + E+GM+H  EI  L+   
Sbjct: 126 KDVLAAVLAKRYRVWATKGNFNNLIGMPLTVLSAPADTEVLVLEMGMNHFHEIERLSQSA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIFLNYDDSFFELLKAK 238
            P++A+++ I  +H+      E IA AKAEI +G+   G     + L  +D F   ++  
Sbjct: 186 NPNLAIVSKIGTSHIGILGSRENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDT 245

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQL-QGKSMEVVHHGIGYHMAQNM 296
                   +   G S + + + R  +   E      +   QG++++ +    G     N 
Sbjct: 246 FAQPAGIDVMLAGVSDDDEVRARDVRVDDEGRPVFTLDFGQGETIDTMLAIPGVQSVPNA 305

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +   L    +      + F      G R      +    +ID+SYNA+  SM A 
Sbjct: 306 VKAAAVAYRLGVTPEQI---DAAFRGLTITGHRQEIKRAKSGARVIDDSYNASAESMAAG 362

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK 415
           + +L  +S    G R+A+LG+M EMG+ +   H  +    +   +  +    G     + 
Sbjct: 363 LDLLCSLS--CTGSRMAILGEMGEMGDEAPRMHELVGAYAAAKKLDMLACVGGELAQLMA 420

Query: 416 DALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           DA          +        +   +  +L   DV +VK S      R + 
Sbjct: 421 DAARMMGMDEDRIQVFSDYQQVLDRMGGALEKHDVALVKGSRFVELDRFVE 471


>gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 200/441 (45%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    VV+    A   +  I    VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEAEYAPEDNKHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  L+         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + D  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHDLAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L  +   T+F+++D+ +   +           +  +G S+N+ +         
Sbjct: 194 KGELYDYLREKDDSTVFIHHDNVYLMDIA------RGLNLIPYG-SENSLY--VNGHVTG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      G   +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGNLHQVQTQLIGEYNFPNALAAVTIGRFFGVESSKIDEALAGYTPR 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM AA+     ++     R++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---RKMLILGDMRELGA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + E L   +   V L G    +     P             L   +Q+    
Sbjct: 358 ESAAEHHKIVEYLQECSFEKVLLVGELFASTNPPYPT------YANAQELIKDLQTENPQ 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  +++K SN      ++  L
Sbjct: 412 GYTILIKGSNGIKLSTVVEFL 432


>gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 503

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 199/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +LS+P   V++   AL ++A   +      ++A+TGS GKT+ K +L   
Sbjct: 67  VDRL----LPALSVPQVVVENTELALARVAAGMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P + DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWFEQQLLAQPV 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I  +G   +AD   R+ +  +  +   +       +V     G H   N L   G+
Sbjct: 243 QGRRILRYGLQISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+  HP  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQAHPVAG---RQIAQTLPSGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGDGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ L D                                       
Sbjct: 416 RV--FATHAELIDALQADLFDAASRETRTQQHASGNTQEHAVIHQQQSPSTAALSGAASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
          Length = 501

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 113/475 (23%), Positives = 198/475 (41%), Gaps = 25/475 (5%)

Query: 3   PLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           P+ T       +Q       +   P   +  +  D+R++   + F A++G  +D +DF+ 
Sbjct: 5   PMLTLQQAHALVQARIPRARLVGEPGTPLLRVHTDTRTLQAGDLFVALRGERFDANDFLA 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A     G           + +  +P   V D L AL  LA   R R    ++ +TGS G
Sbjct: 65  QARA---GGAAAALAHPGRLDAAGLPGIEVPDTLAALGALAAGWRARLDLPLVGVTGSNG 121

Query: 119 KTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTT  +M+   L + K    +A  G++NN IGVPL L R+    +  + ELGM+H GEI 
Sbjct: 122 KTTVTQMIASVLRAWKGDAAFATQGNFNNDIGVPLMLLRLRDAHEAAVIELGMNHPGEIA 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  + RP +A++      HL     ++ +A     +   L   G       D++  L +
Sbjct: 182 VLAGIARPTVALVNNAQREHLEFMHTVQAVAEENGSVISALPPDGVAVFPAADTYAPLWR 241

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +   G +   +F       AD +    +  +    +++     + +      G H   
Sbjct: 242 GLA---GTRRCLTFCDRAGVAADVRCTDARWETGAWNVQIDTPQGAFDGTLRIAGRHNVA 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYNAN 349
           N L          A +D   + L+ F P +GR + +   + Q        T +D++YNAN
Sbjct: 299 NALAATACALAAGAPLDAIARGLAAFEPVKGRSRAFVATVAQPGGAPRRITAVDDTYNAN 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SM+AAI VL+++     G ++ V+GDM E+G+    FH +         I  ++  G 
Sbjct: 359 PDSMRAAIDVLAELP----GPQLLVMGDMGEVGDQGPQFHAEAGGHARERGIGRLFALGA 414

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +    A        + + M  L   ++ +  +   V+VK S      +++  L
Sbjct: 415 LGIHAVQAF--GPQARHFDDMASLLAAVRKAAPESGSVLVKGSRFMKMEQVVQAL 467


>gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
 gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
          Length = 478

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 199/469 (42%), Gaps = 26/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +   +     G      +  +S D+R+I   + F A+ G ++D + F+  A ++GA 
Sbjct: 6   LSAIAAQLNSKWQGD--DVVITAVSTDTRTIKAGDLFIALSGDNFDANRFVATAAEEGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V          + IP   V D   AL  L    R      + A+TGS GKTTTKEML
Sbjct: 64  AAIVTKKQA-----VDIPQIIVKDSRIALGLLGKMVREHVAPKVAALTGSNGKTTTKEML 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  +  T A  G++NN IGVPLTL R+     F + ELG +H  EI + T LV P +
Sbjct: 119 AAILKLVAPTLATAGNFNNDIGVPLTLLRLQQQHQFAVMELGANHKKEIAYTTGLVLPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  +  AHL  F  ++ +ASAK+EI  G+++ G   LN DD F+     K  A   + 
Sbjct: 179 VLINNVDAAHLEGFGDLQGVASAKSEILSGVKQQGIAVLNRDDKFYPYWLRKVDA---QR 235

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             SF     NAD+     +  +  +   ++        +     G H   N L    I S
Sbjct: 236 QVSFSVVDDNADYFAADIEFDNAGNPTFKLCTSNGDCTINLAVAGRHNVANALAAAAIAS 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D+ T  + L      +G   R + +       +ID+SYNAN AS+KAAI+VL+   
Sbjct: 296 CFGIDISTIKRGLESMVNVQG---RLKISQLTPRIRIIDDSYNANIASVKAAINVLTHFP 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  + V+GDM E+G  +   H  +        + HV+  G            S   
Sbjct: 353 STN----VLVMGDMGELGSSTADMHQQVGHYAQQQQVDHVYTCGAVSREAALTAGESGRA 408

Query: 425 HYSETMDGLFLFIQSSLV--DGD---VVVVKSSNSCGFYRLINLLLEEF 468
             +++   L   +   +          ++ K S S    + I LL  + 
Sbjct: 409 FLAQS--ALVDALVELVTTAPDTQMFTLLFKGSRSAKMEQAIGLLTTKL 455


>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
 gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
          Length = 536

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 146/514 (28%), Positives = 222/514 (43%), Gaps = 59/514 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ +A+ G              N +  DSR I     F AI G H DGHD++
Sbjct: 27  MMPM-SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112
            +A + GA + +V       +   ++    V++ + AL  LA              TII 
Sbjct: 86  KNAEKSGAVVAIV----EHVVEGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIG 141

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+ML   LS++ +T A +GS+NN+IG+PLT  ++  +  F I E+G +H+
Sbjct: 142 ITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LTH+  P +A++  +  AHL  F  +E IA AK+EI  GL   G   LN DD   
Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDD--- 258

Query: 233 ELLKAKSHALGIKTIYSFGKS---------KNADFQ--LRKWKQCSEQSWMEVQLQG--- 278
           + + A S  +  K +  FG++            D+Q      K  S    +    +    
Sbjct: 259 KRVSAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNS 318

Query: 279 ----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCA 333
                 +EV     G H   N L    +   L   +D     LS          +    +
Sbjct: 319 SNLMNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVS 378

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSF 388
            N   FTLID+S+NANP SMKA I  L        S   +  RIAVLG M E+G      
Sbjct: 379 KNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDEL 438

Query: 389 HIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH-------------VHYSETMD 431
           H ++ E ++  ++  V   G      +  L   + +                V++  + D
Sbjct: 439 HTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSAD 498

Query: 432 GLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463
                +   +      VV++K S++ G   L   
Sbjct: 499 EADDIVWKIVAEHPSSVVLLKGSHASGLSVLAEY 532


>gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
 gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
          Length = 495

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 140/482 (29%), Positives = 220/482 (45%), Gaps = 26/482 (5%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++     G  +G       V G + IDSR + P + F A  G H DGHDF+  A   
Sbjct: 5   TAREIAAVTGGELVGGATGDELVTGTARIDSREVGPGDLFAAFLGEHVDGHDFLDAARTA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-----LRSKATIIAITGSVG 118
           GA L +V     A+    S+P   VDDV  AL  LA A          +  ++A+TGS G
Sbjct: 65  GAALSLVT--DAAAAAEHSLPAVRVDDVRDALAALARAQLARARQENPQLVVLAVTGSAG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TK++L   L S   T A +GS+NN +G+PLT+ ++  +  F + E+G   +G I  L
Sbjct: 123 KTGTKDLLGTILRSAGPTVAPVGSFNNELGLPLTVLQVTGETRFLVLEMGARGIGHIAEL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP ++++  +  AHL  F  ++ IA AK E+ + L   G   LN +D     +  +
Sbjct: 183 TEIARPDVSLVLNVGSAHLGEFGSVDAIARAKGELVDALAPGGRAILNAEDRLVAAMAER 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQG-----KSMEVVHHGIGY 290
           S A  +   ++ G  + A+  L +        E       L G      S  V    +G 
Sbjct: 243 SAAPVVTWGFTTGDVRGAELTLDEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGE 302

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N+L  L    +   D  +A  AL       G  +R +  L  G   +ID++YNANP
Sbjct: 303 HQAANVLAALTAALMAGVDSASATAALDGATLASG--QRMQV-LRAGGALIIDDAYNANP 359

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S++ A+  L+ +      R IAVLG+M E+G  +   H ++  +    NI  +++ G  
Sbjct: 360 DSLRQALKTLAHLGRRH--RTIAVLGEMLELGPDTVRLHDEIGRLAVRLNIGQLYVVGEG 417

Query: 411 VLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +               Y +T++     ++  +  GD V++KSS   G  R+   L+E
Sbjct: 418 AAPIHHGASLEGSFGGESEYLDTVEEAIAVLERIVQPGDAVLLKSSRDAGLRRIAAPLVE 477

Query: 467 EF 468
             
Sbjct: 478 HL 479


>gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. 2_1_7]
 gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
 gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
          Length = 427

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 212/450 (47%), Gaps = 27/450 (6%)

Query: 18  SIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           SI  +   F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++    
Sbjct: 2   SIIDLYDLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDY 61

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                       VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+   
Sbjct: 62  YIGERT----ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFN 117

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  A
Sbjct: 118 LLYTEGNFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRA 177

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F   E +   K E+++ + ++ G IF+  ++ + + +     A GI+ I ++G   
Sbjct: 178 HLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSI-----AKGIEQI-TYGNGD 231

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +A F   +   C        + QGK   V  H IG +   N+L  + +        +   
Sbjct: 232 DA-FASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERIS 290

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A++ + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +
Sbjct: 291 RAIAAYEPTNNRSQFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQPKA---II 343

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G  S   H ++ E +       V+L G H   +              T + + 
Sbjct: 344 LGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMV 397

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++   + G  +++K S+S G  +L ++L
Sbjct: 398 EELRKQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. D2]
 gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 431

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 194/442 (43%), Gaps = 29/442 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDKR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHI
Sbjct: 72  VDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+++ L K   I F+++D+++   +           + S+G     D  +   +  
Sbjct: 192 KTKGELYDFLRKKDAITFIHHDNAYLMNIAQ------GLNLISYGTED--DLYV-NGQIT 242

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +      G+  +V    IG +   N L  + I      +     +AL+ + P
Sbjct: 243 DNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTP 302

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G
Sbjct: 303 QNNRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH---KMLILGDMRELG 355

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S + H  + + +       VWL G    A + +               +   +Q+   
Sbjct: 356 AESPAEHQKIVDYIKESGFEKVWLVGELFAASEHSFKT------YANAQEVIKDLQADKP 409

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  +++K SN       +  L
Sbjct: 410 KGYTILIKGSNGIKLSSTVEYL 431


>gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
 gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
          Length = 427

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 212/450 (47%), Gaps = 27/450 (6%)

Query: 18  SIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           SI  +   F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++    
Sbjct: 2   SIIDLYDLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDY 61

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                       VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+   
Sbjct: 62  YIGERT----ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFN 117

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  A
Sbjct: 118 LLYTEGNFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRA 177

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F   E +   K E+++ + ++ G IF+  ++ + + +     A GI+ I ++G   
Sbjct: 178 HLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSI-----AKGIEQI-TYGNGD 231

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +A F   +   C        + QGK   V  H IG +   N+L  + +        +   
Sbjct: 232 DA-FASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERIS 290

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A++ + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +
Sbjct: 291 RAIAAYEPTNNRSQFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQPKA---II 343

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G  S   H ++ E +       V+L G H   +              T + + 
Sbjct: 344 LGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMT 397

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++   + G  +++K S+S G  +L ++L
Sbjct: 398 EELRRQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 503

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 198/498 (39%), Gaps = 55/498 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +LS+P   V +   AL ++A + +      ++A+TGS GKT+ K +L   
Sbjct: 67  VER----LLPALSVPQVVVKNTELALARIAASMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  A  +
Sbjct: 183 HVALVNNIAPAHLERLCSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I  +G    AD   R+ +  +  +   +       +V     G H   N L   G+
Sbjct: 243 QGRRIVRYGLQIGADITARQLQLQAGATQFTLVTPQGEAQVALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+  HP  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQAHPVAG---RQIAQTLPSGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGG 415

Query: 423 HVH--YSETMDGLFLFIQSSLVDGD---------------------------------VV 447
            V   + E +D L   +  +   G                                   +
Sbjct: 416 RVFATHGELIDALQADLVDTARRGTRTQQHASGNTQEHAVIHQQKSPSTAALSGAASITI 475

Query: 448 VVKSSNSCGFYRLINLLL 465
           +VK S      R++  LL
Sbjct: 476 LVKGSRGSAMDRVVTALL 493


>gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 504

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 144/507 (28%), Positives = 212/507 (41%), Gaps = 52/507 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +      I    PQ  V G +  DSR I P   F A+ G   DGHDF  
Sbjct: 1   MIELTT-QKIAEVTGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------------LNKLAVAARL 104
            A+  GA L++V   +      L+ PV   +    A              L  +   AR 
Sbjct: 60  AALNSGAALLIVGRPVEQP-ALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARY 118

Query: 105 RSK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            +          ++ +TGS GKT+TK+++   L    +T A  GS+NN IG+P T  R  
Sbjct: 119 NTDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAG 178

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  F + E+    +G I+ LT +  P + V+  +  AHL  F   + IA AK E+ E L
Sbjct: 179 RDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL 238

Query: 218 EK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-------ADFQLRKWKQC- 266
                 G   LN DD     +  ++ A     +  F            AD+     +   
Sbjct: 239 PAAADGGLAVLNADDDKVAAMDKRTAA----RVVRFSTEGATGAAGVPADYYATDIELDA 294

Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +  S+M     G+ + V     G H   N L    +   +  D  T    LS       
Sbjct: 295 VARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSSHVAASV 354

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR----IAVLGDMCEM 381
                R   + G  T+I++SYNANP SM+A I  L+  +   +GRR     AVLG M E+
Sbjct: 355 NRMDVRTRESDG-VTIINDSYNANPESMRAGIDALAYTA---KGRRDAASWAVLGQMGEL 410

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPR-SIHVHYSETMDGLFLFIQ 438
           GE +   H +L  VL+   I H  +   G +  AL +A     +     E +DG   ++ 
Sbjct: 411 GEDASDEHAELGHVLAQRRIDHAVIVGNGVNQRALANAARESGVETQVVENIDGAVNYLD 470

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465
            SL   DVV++K+S S G + +   LL
Sbjct: 471 MSLNPQDVVLIKASYSDGLWAVAEGLL 497


>gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 453

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 197/469 (42%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD--GHDFIL 58
           M PL    ++ + + G  I       +  +S     + P+  +  +     D   +  + 
Sbjct: 1   MKPLK-ITEIAKVVGGKLINCNKDIILKSVSTRVFGVKPEYLYIYLTYSKSDYNPNPDVE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++ GA  ++V   +        +P   V++   AL  L    R +    +IA+TG+ G
Sbjct: 60  QAIKNGAAAIMVPCKIDCK-----VPQIIVENTDTALRTLCKHYRKKFDIPVIAVTGTSG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++ + LS    T+  + + N+ IGVP+T  ++       + E+G+   G I+  
Sbjct: 115 KTSTKDLIALVLSERFNTHKTLSNVNDLIGVPMTTLQINDTHQISVIEIGLRSYGHIKKG 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +VRP I VIT+I  AH+S+F   E I  AK E+    +K   + +N DD     +K K
Sbjct: 175 VDIVRPSIGVITSIGTAHISSFGSKENIMKAKMEVATYFDKNDILIINGDDPLLSTIKEK 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +      I     +   ++  +  +   E     +   +G+         G H   N +
Sbjct: 235 PY-----KIIRISLNGKGEYNAKDVRDLGEKGVEFKCDYKGEEHLFKLKVPGIHNVYNAM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I  +   +VD   + +  F P      R      +    +I + Y +   SMKA I
Sbjct: 290 FAIAIGDLFDIEVDDVKRGIVKFQPDNL---RVNIVKMKNNAKIILDCYTSELDSMKAGI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +VL     +   ++IAVLG M   G L++  H ++   + +     +   G +   + + 
Sbjct: 347 NVLKSFGGN---KKIAVLGSMYGCGNLTEEIHREIGRYV-IGKCDILVTVGGNARYINEE 402

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +   + ET +    ++++ +   DV+++         ++ N LL+
Sbjct: 403 AKDKLEGKHCETKEEACSYLKNIIQKDDVILINGGRILKLEQIANYLLQ 451


>gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 427

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 197/439 (44%), Gaps = 28/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + I  D+R I     FFA+KG ++DG+ +   A++KGA   V++   +            
Sbjct: 15  SSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRK-----IL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +VL  L  LA   R + K  I+AITGS GKTTTK++++  LS   K  A  G+ NNHI
Sbjct: 70  VKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     ++D GI E+G +H  EI  L  +  P+   IT    AHL  F G+E + 
Sbjct: 130 GVPLTLLSFTAELDLGIIEIGANHQKEIESLCKIAEPNYGYITNFGKAHLEGFGGVEGVI 189

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+++ L    G IF N DD           A+  K  YS G+   +D ++      
Sbjct: 190 KGKSELYDYLIHHDGLIFFNRDDDI-----QVKKAVNYKN-YSIGEKPLSDCRVTFMDAN 243

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  V+L+   +++    IG +  +N+   +G+        D   +A+  F  +E R
Sbjct: 244 PF-----VELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKDEIKEAIENFEAEEMR 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +       +    ++ ++YNANP SMKAA+    ++S   +     +LGDM E+GE + 
Sbjct: 299 SQVIE----KNDLKILLDAYNANPTSMKAALESFKKMSSQSQ---TVILGDMFEIGETTL 351

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGD 445
             H  + +     N   +   G H            ++    T   L  FI         
Sbjct: 352 EEHRQILKTCETLNFDSILACGEHFSEASKGFE---NISSFRTKKDLTAFISKYKPKASS 408

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S       L++  
Sbjct: 409 FILIKGSRGMQLETLMDAF 427


>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 134/498 (26%), Positives = 218/498 (43%), Gaps = 43/498 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W  H +  A+ G  +     G    I  D+R++   + F A+ G ++DGH F+  A +K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAG---SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               VV N  +        + V G  D L AL  LA   R R    ++ +TGSVGKTT +
Sbjct: 173 QCAGVVAN-WVPHGWSRGFVQVEG--DTLDALQALASDVRARFWGPVVGLTGSVGKTTAR 229

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            M T+AL  +    +   G++NN IGV LTL R+       + ELGM+H GEI  L +  
Sbjct: 230 AMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANTA 289

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P + V+  + PAH+ NF  G+EE+A+AK EIF          +N DD     L      
Sbjct: 290 KPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP----LAMAVPL 345

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ------------------------ 277
                +  FG+ + +D +L   K  +    + V L+                        
Sbjct: 346 PAGVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNET 405

Query: 278 --GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                +E      G H+A N      + + L   +++  ++LS+F P + R +       
Sbjct: 406 VTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPA 465

Query: 336 QGFFTL-IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                L I++ YNANP S++A++ +L  +  +   RRIA+LGDM E+GE+S S H  + +
Sbjct: 466 SHVQILVINDCYNANPMSVEASLQLLQSVKSN---RRIALLGDMFELGEISLSSHKGILQ 522

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +   + +  V + G       +   +   +        L   +   +  GD V+VK S  
Sbjct: 523 LCVDFKLDLVIVVGTCFSEAAE-FFKGRDIIAFRNTSSLTNHLARFISPGDSVLVKGSRG 581

Query: 455 CGFYRLINLLLEEFPAIQ 472
                L+  +     + Q
Sbjct: 582 MRMEVLVEAIKSCAESWQ 599


>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 528

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 130/502 (25%), Positives = 204/502 (40%), Gaps = 43/502 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   +++ + G   G   P   V G +  DSR +     F A+ G   DGH++  
Sbjct: 25  MIEL-TLGQIVEIVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 83

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVA- 101
            A+ +GA  V+        + S+ +P     D                V+ AL+KLA   
Sbjct: 84  TAIGQGAVAVLAAR--PVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHV 141

Query: 102 ---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
              A      T++A+TGS GKT+TK+ +   LS    T A  GS+NN +G+P T  R   
Sbjct: 142 VDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTT 201

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + + E+    +G I  L  +  P I  +  +  AHL  F     IA AK E+ E L 
Sbjct: 202 HTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGELVEALP 261

Query: 219 K---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCS-EQS 270
                G   LN DD F   +  ++ A     + +F      +  A +     +     ++
Sbjct: 262 AAADGGVAVLNADDPFVAAMAPRTTA----RVVTFSTANPPAPGAQYWAGDLELDDVARA 317

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S  V     G H   N L    +      D  T +  LS          R 
Sbjct: 318 SFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLS--SHAAASAHRM 375

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFH 389
                    T+I++SYNANP SM+A ++ L+   S   +    AVLG M E+G+ +   H
Sbjct: 376 DVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEH 435

Query: 390 IDLAEVLSLYNISHVWLSG--FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             L   L+ Y++  +   G   +  AL++ A    +              ++  + DGDV
Sbjct: 436 RALGAELAKYHVERLIAVGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDV 495

Query: 447 VVVKSSNSCGFYRLINLLLEEF 468
           V+VK+SN+   +R+   L   F
Sbjct: 496 VLVKASNADQLWRVAEELHAMF 517


>gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
 gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
          Length = 424

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 200/438 (45%), Gaps = 30/438 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG+  D+RS+   + +FA+KG +++G+ F   A++ GA L +V+     +  S       
Sbjct: 14  NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRS-----VL 68

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II ITGS GKTTTKE++   LS      A  G+ NNHI
Sbjct: 69  VDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNLNNHI 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    + GI E+G +H GEI+ L  + +P+   IT    AHL  F G E + 
Sbjct: 129 GVPLTLLTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188

Query: 208 SAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++  L +    +F+N  D        +          +FG S+       ++   
Sbjct: 189 KGKSELYNYLRENNELVFINDQDEI------QVRQSANIVSKTFGSSQ------SEYPVY 236

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E     +++      +  + IG +   N+ + + + +     +      +  + P   R
Sbjct: 237 LEDGSGNLKITVGETTITSNLIGTYNFSNIAVAMAMGNHFDVPLTHIKNGIEKYVPSNNR 296

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     +++  + +I ++YNANP SM AA+  L     +     IA +GDM E+GE S+
Sbjct: 297 SQ----IIDKDTYKIILDAYNANPTSMAAALKNLQATGTNA----IAFIGDMFEVGETSK 348

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + ++    NIS V+  G           + ++  Y    D         +     
Sbjct: 349 AEHQAILDLAHNLNISKVYAIGPDFGTSSPHPEQKVYGSY----DAFAKAYSKQIPADTT 404

Query: 447 VVVKSSNSCGFYRLINLL 464
           V++K S      R++++L
Sbjct: 405 VLIKGSRGMKMERILDIL 422


>gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
          Length = 448

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 191/463 (41%), Gaps = 23/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T    L  + G ++          +  D+R++ P + F A++G  +DGH+F+  A + GA
Sbjct: 4   TLAQALPFVPGATLVGEGTTAFARVHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +  ++  L +P     D L AL +LA   R R    ++A+TGS GKTT  +M
Sbjct: 64  VAAIAEHGLSDALPGLQVP-----DALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQM 118

Query: 126 LTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +   L +      +A  G+ NNHIGVPLTL  +      G+ ELGM+H GEI  L  + R
Sbjct: 119 VAAILRAAHGDAAFATRGNLNNHIGVPLTLLGLEPAHAAGVVELGMNHPGEIAELAAIAR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++      H    + +E +A    +    L   G      DD +  L +  +   G
Sbjct: 179 PTIALVNNAQREHQEFMATVEAVARENGQAIAMLPPDGVAVFPADDDYTPLWRELA---G 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +F     AD   R   Q  ++  +E+      +       G H  +N L      
Sbjct: 236 ARRTITFALDGAADLTARATWQ-GDRWRVEMATPAGPLVTTLAVAGRHNVKNALAAAACA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                        L+ F P  GR +  R A   G  TL+D+SYNANP S  AA      +
Sbjct: 295 LAAGVAPAAIAAGLTAFQPVAGRSQAARLATAHGEITLVDDSYNANPDSALAA----VAV 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  VLGDM E+GE    FH ++        I  VW +G     +         
Sbjct: 351 LAALPGPRWLVLGDMGEVGERGPEFHAEVGAAARAAGIETVWTAGTLSRHVGAD------ 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +    L   +  +      V+VK S      +++  L E
Sbjct: 405 -RHFDNTPALVAALADAPQAAS-VLVKGSRFMRMEQVVRALKE 445


>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 134/498 (26%), Positives = 218/498 (43%), Gaps = 43/498 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W  H +  A+ G  +     G    I  D+R++   + F A+ G ++DGH F+  A +K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAG---SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               VV N  +        + V G  D L AL  LA   R R    ++ +TGSVGKTT +
Sbjct: 173 QCAGVVAN-WVPHGWSRGFVQVEG--DTLDALQALASDVRARFWGPVVGLTGSVGKTTAR 229

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            M T+AL  +    +   G++NN IGV LTL R+       + ELGM+H GEI  L +  
Sbjct: 230 AMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANTA 289

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P + V+  + PAH+ NF  G+EE+A+AK EIF          +N DD     L      
Sbjct: 290 KPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP----LAMAVPL 345

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ------------------------ 277
                +  FG+ + +D +L   K  +    + V L+                        
Sbjct: 346 PAGVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNET 405

Query: 278 --GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                +E      G H+A N      + + L   +++  ++LS+F P + R +       
Sbjct: 406 VTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPA 465

Query: 336 QGFFTL-IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                L I++ YNANP S++A++ +L  +  +   RRIA+LGDM E+GE+S S H  + +
Sbjct: 466 SHVQILVINDCYNANPMSVEASLQLLQSVKSN---RRIALLGDMFELGEISLSSHKGILQ 522

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +   + +  V + G       +   +   +        L   +   +  GD V+VK S  
Sbjct: 523 LCVDFKLDLVIVVGTCFSEAAEYF-KGRDIIAFRNTSSLTNHLARFISPGDSVLVKGSRG 581

Query: 455 CGFYRLINLLLEEFPAIQ 472
                L+  +     + Q
Sbjct: 582 MRMEVLVEAIKSCAESWQ 599


>gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 503

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 128/500 (25%), Positives = 198/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +LS+P   V D   AL ++A + +      ++A+TGS GKT+ K +L   
Sbjct: 67  VERL----LPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  IA  K  I+  L   G   +N DD+F    + +  A  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I  +G    AD   R+ +  +  +   +       +V     G H   N L   G+
Sbjct: 243 QGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+  HP  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQAHPVAG---RQIAQTLPSGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ LVD                                       
Sbjct: 416 RV--FATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus]
          Length = 463

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 126/456 (27%), Positives = 189/456 (41%), Gaps = 22/456 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++     G  +       V   +  DSR + P   F A  G   DGHDF    V  
Sbjct: 4   MTLGEIAGITGGRLVNSDGSAEVTASVEYDSRKVVPGGLFVAFPGERVDGHDFASAVVAA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA  V+   D          P   V+D L A+  LA     R  + T++ +TGS GKTTT
Sbjct: 64  GAAGVLGTRDTGE-------PGVVVEDSLRAVATLAHEVVARLPELTVVGLTGSSGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ +   LS +  T A  GS NN +G P T+ +   D  F + E+G   +G IR LT + 
Sbjct: 117 KDYIGQLLSRLGPTVALPGSLNNELGFPYTVLQAGADTRFLVLEMGARGVGHIRHLTGIA 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I V+  I  AH+  F  +E  A AK E+ E L +TG   LN DD+    + +++ A 
Sbjct: 177 RPSIGVVLNIGAAHIGEFGSVEGTALAKGELVEALPQTGVAVLNADDALVSAMASRTGA- 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + + G++  A  +           +   ++   +   V     G H   N L    
Sbjct: 236 ---RVVTVGEAAGAQLRAVDVTLDPAGRASYVLEHGERRGTVRLRVAGRHQVANSLSAAA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        D  + ALS         +R          T+ID+SYNANP+S  AA+  L+
Sbjct: 293 VALTAGLAFDDLVTALSEMSMVSD--RRMDVFERPDGVTVIDDSYNANPSSTAAALRALA 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            +S     R  AVLG M E+GE   S H ++  + +   +  +     +   + D     
Sbjct: 351 AMSA--GRRTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRLIAVAENARPILDGAAEV 408

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                   ++         +Q  L   DVV+VK S 
Sbjct: 409 GAWRGTARFAADQAAAIEILQDDLRADDVVLVKGSR 444


>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
 gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
          Length = 536

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 146/513 (28%), Positives = 222/513 (43%), Gaps = 59/513 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ +A+ G              N +  DSR I     F AI G H DGHD++
Sbjct: 27  MMPM-SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112
            +A + GA + +V       +   ++    V++ + AL  LA              TII 
Sbjct: 86  KNAEKSGAVVAIV----EHVVEGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIG 141

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+ML   LS++ +T A +GS+NN+IG+PLT  ++  +  F I E+G +H+
Sbjct: 142 ITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LTH+  P +A++  +  AHL  F  +E IA AK+EI  GL   G   LN DD   
Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDD--- 258

Query: 233 ELLKAKSHALGIKTIYSFGKS---------KNADFQ--LRKWKQCSEQSWMEVQLQG--- 278
           + + A S  +  K +  FG++            D+Q      K  S    +    +    
Sbjct: 259 KRVSAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNS 318

Query: 279 ----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCA 333
                 +EV     G H   N L    +   L   +D     LS          +    +
Sbjct: 319 SDLMNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVS 378

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSF 388
            N   FTLID+S+NANP SMKA I  L        S   +  RIAVLG M E+G      
Sbjct: 379 KNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDEL 438

Query: 389 HIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH-------------VHYSETMD 431
           H ++ E ++  ++  V   G      +  L   + +                V++  + D
Sbjct: 439 HTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSAD 498

Query: 432 GLFLFIQSSL--VDGDVVVVKSSNSCGFYRLIN 462
                +   +      VV++K S++ G   L  
Sbjct: 499 EADDIVWKIVAEHPSSVVLLKGSHASGLSVLAE 531


>gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
 gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
          Length = 494

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 214/494 (43%), Gaps = 40/494 (8%)

Query: 8   HDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +     G  +   + P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA
Sbjct: 6   KQIAACTGGSFMVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              +V   +  ++      L   V  V D   A+  +A   R      +IA+TGS GKTT
Sbjct: 66  VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK ++   L+S   T A  G+ NN +GVP TL     D    + E+GM   G++  L   
Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSH 240
           VRP   ++  +  +H+      E IA AKAE+   L +  G  F+N DD + + ++  + 
Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245

Query: 241 --ALGIKTIYSFG--------------KSKNADFQLRKWKQCSEQ-SWMEVQLQG----- 278
             A  ++T+   G              ++        + +   +      +   G     
Sbjct: 246 LDARRVETVLFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGFADAP 305

Query: 279 --KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             ++        G H   N      +       +     AL+   P+ GR +  R    +
Sbjct: 306 EEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRA---R 362

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FT+++++YNANP SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  
Sbjct: 363 GGFTVVNDAYNANPDSMRASLATFCALD--VPGKHVAVLGDMGELGSYAPACHAGIGEFA 420

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   +  +   G   L + DA  R+      +  + ++  +F  + + +  GD V+VK+S
Sbjct: 421 ATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKAS 480

Query: 453 NSCGFYRLINLLLE 466
           +  G  R++  L+ 
Sbjct: 481 HFMGLTRVVEGLVN 494


>gi|187479354|ref|YP_787379.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella avium 197N]
 gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bordetella avium 197N]
          Length = 939

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 199/442 (45%), Gaps = 23/442 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S D+RS+A  E F AI G ++DGH ++  A             +   +   S+P  
Sbjct: 500 VAGVSTDTRSVAADEIFVAISGENFDGHRYLAQAQ----AAGACAAVVAHRVSDSSLPQL 555

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143
            + +   AL +LA A R R    +IA+TGS GKTTTKEM++  L++        A  G++
Sbjct: 556 VLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNF 615

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLTL R+       + ELGM+H GEI +L  + +  +A++      H     G+
Sbjct: 616 NNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGV 675

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A     +   L + G      DD +  +    +   G + +  FG     D   +K 
Sbjct: 676 EAVARENGAVLSALPEDGVAVYPGDDVYTPIWDELA---GARRVLRFGLQPGLDVYAQKI 732

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +  +  +V       ++V    G H  +N L  +       A + +A++AL  F   
Sbjct: 733 RPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAV 792

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +R   +       LID++YNANP S++ AI VL+Q+     G R+ VLGDM E+G+
Sbjct: 793 KGRMQRKETS---NGTILIDDTYNANPDSVRVAIEVLAQLP----GPRVLVLGDMGEVGD 845

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV 442
              + H ++        I  +   G    A         H     ++D +   ++  +  
Sbjct: 846 EGPAMHREVGGYARDQGIDAMVTLGDASRAAAAEFGAGAHA--CASVDEVLAALRGMNPF 903

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
               V++K S      R++   
Sbjct: 904 S---VLIKGSRFMRMERVVTAF 922



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 161/405 (39%), Gaps = 27/405 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD---MVASIGSLSIPV 85
            + +DSR ++P + F A +G   DG  +I  A+  GA +V+ ++D         S  +PV
Sbjct: 29  HLRLDSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDALTQSVVADSRVLPV 88

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143
            G+  +LG L       +  +  T++A+TG+ GKT+  + L  AL+ + K    IG+   
Sbjct: 89  AGLRGMLGELADGW-YGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGTLGG 147

Query: 144 ----------NNHIGVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                     N      +TL R+     D       +  S +G  +     VR   A  T
Sbjct: 148 LLPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAGYT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E+  +AKA +F          +N DD+    L AK   +G+ + Y+ 
Sbjct: 208 NLTRDHLDYHGTMEQYEAAKALLF-NWPGLQAAVINADDAAGRRLLAKLP-VGLASAYAI 265

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                AD +    +  +      +       +VV   +G+H   N+L+  G++  L   +
Sbjct: 266 -DHAEADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGWPL 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               + ++   P +GR +      +     ++ + Y   P +++ A+  L  ++    G 
Sbjct: 325 AAVAREVAAAAPVDGRLQAVAPVGSAQGPLVVVD-YAHTPDALERALLALRPVAQARNGA 383

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            + + G     G+       ++  +        + +S  +  +  
Sbjct: 384 LVCLFGC---GGDRDPGKRPEMGRIAGEL-ADRIIVSSDNPRSEA 424


>gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 423

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 199/436 (45%), Gaps = 29/436 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++IDSR IA  + FFA  G +++       A+  GA  V+V      +       +F V 
Sbjct: 16  VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVELPEFENRDKN---IFYVP 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             L  L +LA+  R +     I +TGS GKTTTKE++   LS         G+ NNHIGV
Sbjct: 73  STLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  +  + +  + E+G +H  EI FL  + +P    IT    AHL  F G E +   
Sbjct: 133 PLTILSIKPEHEMAVIEMGANHQKEIEFLCTISQPDFGYITNFGKAHLEGFGGFEGVIKG 192

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++ L+    TI +N +D    +   K+     K   +FGK  +       ++  SE
Sbjct: 193 KSELYDYLKNNNRTIVVNENDP---IQLEKTENYPSK--ITFGKETSN----YNFESFSE 243

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           + ++ +  QG  ++ V    G +   N+     +        +    AL ++ P   R +
Sbjct: 244 EHFVGLIYQG--VKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKIKHALELYTPTNMRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +    +   TL+ ++YNANP+SM A+++         EG +  ++GDM E+G+ S+  
Sbjct: 302 VVK----KEGRTLVLDTYNANPSSMTASLNNFISF----EGSKTIIIGDMLELGDESEKE 353

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H ++ ++    +   +   G H  A+      +      E    L  +++   +  + ++
Sbjct: 354 HQNILKLAQDLHFDEIITVGKHFKAV------NSSDLAFENTTELAEYLKQHKIQTENIL 407

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      ++I+ +
Sbjct: 408 LKGSRGIALEKIIDFI 423


>gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 428

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 129/437 (29%), Positives = 201/437 (45%), Gaps = 26/437 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  ++G+ F   A+ +G    VV+    A   S       VD
Sbjct: 16  VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGES----YILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R + K  II ITG+ GKTTTKE+++  LS   K     G+ NNHIGV
Sbjct: 72  DCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 132 PLTLLRLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNVGKAHLLGFGSFEGVIKT 191

Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L + G  TIF+  ++S+   +    H         +G++    F   K   CS
Sbjct: 192 KGELYDFLREKGNATIFIQNENSYLNAIAHGLHC------VRYGQASGL-FVSGKLLSCS 244

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E   +  +  V  H IG +   N L ++ +        +   +ALS + P+  R 
Sbjct: 245 PFLAFEWMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDICEALSTYMPQNNRS 304

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N+    LI ++YNANP SM AA+    Q+       ++ +LGDM E+GE S  
Sbjct: 305 QLVDTGRNK----LIVDAYNANPTSMMAALENFRQVQAPH---KMVILGDMKELGEASLE 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +   L       V L+G    A+  A        + + +D +   ++ S   G  +
Sbjct: 358 EHRKIVGFLDGCRFDRVMLAGPEFKAVASAYE------HFDNVDAVKEALEKSKPVGFTI 411

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SNS    +L   L
Sbjct: 412 LIKGSNSMKLSQLPAYL 428


>gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
          Length = 504

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 140/490 (28%), Positives = 208/490 (42%), Gaps = 30/490 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +A+ G     + P   +  ++ DSR +      + A  G   DGHDFI 
Sbjct: 1   MIAL-TAAQIAEAVSGTLSATLDPATVLVHVTPDSREVTAEGTLYVAKPGERADGHDFID 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAIT 114
            A+  GA  V+      A  G+   P   V+D + A+  LA       R  S  T+I IT
Sbjct: 60  TALGAGAAAVLAERATHAPDGAAH-PAIIVEDAVLAMGALAREVVRRVREHSPTTVIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTK++L   L++   T A +GSYN  +GVPLT+ R  +D  F + E+G  H+G 
Sbjct: 119 GSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRFLVVEMGADHVGN 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +L  +VRP I V+  +  AH  +F G+  IA  K E+ E L   G   LN DD     
Sbjct: 179 IAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAG 238

Query: 235 LKAKSHAL------GIKTIYSFGKSKNAD-----FQLRKWKQCS-EQSWMEVQLQGKSME 282
           + A++ A         + +    +   A         R  +    E+   ++Q+      
Sbjct: 239 MAARTAAPITWFTADERGVTRAAEDVAAGRASGLVAARDVRSDDQERPVFDLQVGTDEAA 298

Query: 283 VVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           V H       G H   N+L           D     + L           R         
Sbjct: 299 VRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLG--PASRFRMERTDRADG 356

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+I+++YNANP SM+AA+  L+ +      R  AVLG+M E+G+     H  + E +  
Sbjct: 357 VTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVR 416

Query: 399 YNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            NI+ + + G     L              H+ +       F+   L  GD+V+VKSSN 
Sbjct: 417 LNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNG 476

Query: 455 CGFYRLINLL 464
            G   L   L
Sbjct: 477 VGLAALGERL 486


>gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 447

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 204/468 (43%), Gaps = 24/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G          ++D R   P   F A  G + DGHDF+  A
Sbjct: 1   MIPL-SLEEIAVVVGGTVAGGGSVTVTAPAALDGRKAEPGGLFVAFAGEYADGHDFVDQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            + GA  V+            S+P   V D   AL +LA     RLR   T++ +TGS G
Sbjct: 60  ARAGAAAVLGTRP-------TSLPTVVVQDAREALQRLAKHVVDRLRPGLTVVGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TK+++   LSS   T A  GS NN +GVPLT+ R   +  F + E+G  H+G+I  L
Sbjct: 113 KTGTKDLIAAVLSSAAPTVATAGSLNNELGVPLTMLRADAETRFLVLEMGARHVGDIAAL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV P +AV+  +  AHL  F     IA  KAE+ +GL   GT  LN DD     +   
Sbjct: 173 TDLVAPDVAVVLNVGRAHLGEFGSRGAIAKTKAELVQGLAPGGTAVLNADDPRVAAM--- 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            H L    + +FG++++AD Q+              V+       V    IG H + N  
Sbjct: 230 -HTLTDGPLLTFGRAEHADVQVLYLVLDRLGRPSFTVRTADARAVVTLPLIGAHQSLNAA 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +         ++ A KAL+     +    R       G  TL+++SYNANP S +AA+
Sbjct: 289 AAVTAGLAAGVPLEAATKALATASLSKW---RMELRGLAGGATLLNDSYNANPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I         AVLG+M E+G  +++ H  +    +      +   G     +  A
Sbjct: 346 DALAAIEAARRI---AVLGEMRELGPSTETEHRAIGRYAAHR-ADIILAVGAPAHPIATA 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                        D    +++  L  GDVV+VK+S       +   L+
Sbjct: 402 A--GPRALTLPDNDAALAWLREHLAAGDVVLVKASRGGRLDEVAAALV 447


>gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 127/443 (28%), Positives = 201/443 (45%), Gaps = 30/443 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG +++G+ F   A++ G+  V+++    A  G        
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEAEYALAGDSH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R +    II ITG+ GKTTTKE++   LS         G+ NNHI
Sbjct: 72  VNNCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLRAEHDLGIIEMGASHPGDIKELVDITEPEYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L   K  TIF+++D+ +   +           + S+G   +AD        
Sbjct: 192 KTKGELYDYLRERKNSTIFIHHDNLYLRNMA------RGLNLISYG---SADELYVNGHV 242

Query: 266 CSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                ++  +      G+S EV    IG +   N L  + I        +    AL  + 
Sbjct: 243 TGNSPYLIFEWRAGKDGESHEVKTQLIGEYNFANALAAVTIGHFFEVASEKIDAALREYT 302

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +  + A N    TLI ++YNANP SM+A+IS    +       ++ +LGDM E+
Sbjct: 303 PQNNRSQLKQTADN----TLIIDAYNANPTSMQASISNFRNMEVEN---KMLILGDMREL 355

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+     H  +A+ L+      V L G    A K   P             +   +Q S 
Sbjct: 356 GKDGPKEHQKIADFLAECGFKDVMLVGEQFAAAKHNFPT------YPDAPAVIEVLQKSK 409

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN      +I+ L
Sbjct: 410 PHGKTILIKGSNGIKLSTVIDYL 432


>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
 gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
          Length = 488

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 201/468 (42%), Gaps = 21/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-------ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               L+Q + G   G+    +V         +  DSR +     F  + G  +DGH F+ 
Sbjct: 28  NLGQLVQ-LWGEPAGLTADQWVQRQSEPLGPVCTDSRRLEAGALFVPLVGEQFDGHAFLA 86

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + GA   +V     AS+    +  + V D   A  +LA   R +  A ++A+TGS G
Sbjct: 87  DAARCGAQAALVAAGSNASLPEGLL-HWRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAG 145

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT+E++  AL+S+    A   + NN IGVPLTL          + E+GM   GEI  L
Sbjct: 146 KTTTRELIRAALASLGPIQASASNNNNDIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERL 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +   +P IAVIT I  AH+      E IA+AK EI   L+  G + +   D   E   A+
Sbjct: 206 SRCAQPDIAVITNIGTAHIGRLGSREAIAAAKCEITAALKLDGVVVIPAGDPLLETALAR 265

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                I  +   G     + QL      ++       L     +      G H A+N L+
Sbjct: 266 VWQGRIHRVALVGDPGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNARNWLL 325

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + S L  D D+ +          GR +R +     G  T++DE+YNA+P ++ AA  
Sbjct: 326 ARAVASGLNVDSDSLVALDVDV--PGGRNRRLKL----GALTVLDETYNASPEAVLAA-- 377

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKD 416
               +     GRR AVLG M E+G+ S + H  + E      +    V  SG    A+ +
Sbjct: 378 --LDLLAQQPGRRFAVLGTMLELGDESAALHRAVVERAVALKLDGLVVVTSGAEATAMAE 435

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A           + +     ++  L  GD +++K+S      RL+  L
Sbjct: 436 AGASLERFAVVASPEAAAEPLRGWLSAGDCLLLKASRGVALERLLPAL 483


>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
          Length = 465

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 211/469 (44%), Gaps = 18/469 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  +G      V G +  DSR       + A +G   DGH F+  A  +G
Sbjct: 4   SAQWIAVAVSGRLVGN--DVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKT 120
           A  V+V  ++  +     +P   V+D   AL  LA A     R      +IA+TGSVGKT
Sbjct: 62  AVAVIVEHEVDEA-----VPQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   +S    T A   S+NN +G+PLT+          + E+G S  G I +LT 
Sbjct: 117 TTKDLLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTD 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +A+   +  AH+  F G E +A+AKAE+ +G    G + LN DD   E +   + 
Sbjct: 177 IVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLAT 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              I+  +S   ++ AD   R  +   ++++   +        V    +G H   N L  
Sbjct: 237 GRVIR--FSASGNERADVVARDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 L   ++T    LS            +   ++    TLID+SYNAN  SM+A I+
Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    + +RIAVLG+M E+GE SQS H  +  +++   +  +   G       +  
Sbjct: 355 ALASI--GRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGA 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P   +   +               DG VV+VK S     +++ ++L E+
Sbjct: 413 PEVPNREVAADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREK 461


>gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
 gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
          Length = 427

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 207/439 (47%), Gaps = 25/439 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  D+R I     FF +KG ++DG+ F   A+Q+GA   VV+       G        
Sbjct: 12  TGIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKT----IL 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L AL  LA   R + +  II ITGS GKTT+KE++++ LS+    +   G+ NNHI
Sbjct: 68  VDDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNLNNHI 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL ++    +  + E+G +  G+I+ L  +  P   +IT I  AHL  F  +E + 
Sbjct: 128 GVPLTLLQLNTTHEIAVIEMGANKPGDIKELVEIALPTHGIITNIGRAHLEGFKSLEGVI 187

Query: 208 SAKAEIFEGLEKT-GTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+F  L +  G IF N +D      L + +H       + +  SK    +L     
Sbjct: 188 KTKTELFNFLAQNRGHIFANKEDETITSHLPSNTHN------HFYNDSKELHGELISLNP 241

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +W E      S ++  + +G +   N L  + I        +   KA+S + P   
Sbjct: 242 FVNMTWSEPNY--TSSDIHTNLVGEYNFINFLAAIRIGRFFGISAENCNKAISDYQPTNN 299

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   N    TLI + YNANP SM++A+S  ++I  H    +I +LGDM EMG+ +
Sbjct: 300 RSQVTKTEKN----TLIVDCYNANPTSMRSALSSFAKIDNHA---KIFILGDMREMGDEA 352

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + H ++ +      +S  ++ G   L  K   P +I   + ++ D L      +     
Sbjct: 353 PAVHEEVIQQTIDLRLSGFFI-GEEFLKFKGTHPNAI---FLKSTDPLIEHFSQNPPADL 408

Query: 446 VVVVKSSNSCGFYRLINLL 464
           ++++K S      ++I  L
Sbjct: 409 LILLKGSRGISLEKVIPYL 427


>gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
 gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
          Length = 468

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 111/468 (23%), Positives = 195/468 (41%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++        + +S DSR+  P + F A+KG  +D HDF+     +
Sbjct: 3   MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V          +++P     +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 63  GASAALV----AHVPAGVTMPAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I         +  D Q+           + +      + V    +G H A+N L   
Sbjct: 239 GNRILDFALHDAGRQNDAQVTG---RLHGGELAIDTPAGVVTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  +  A +    T++D++YNANP SM+AAI V
Sbjct: 296 AAALGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAAQPAP----RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   H+ +    +   + +       ++VK S      R+++ L  +
Sbjct: 412 DTAR-HFGDVGALVEALLAAGYGAQATLLVKGSRYMKMERVVDALTNQ 458


>gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 464

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 129/455 (28%), Positives = 201/455 (44%), Gaps = 43/455 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R I P   +FA+KG  +DG+ F   A+ KGA L V++                V
Sbjct: 28  GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDNPAYQIDERT----LLV 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL AL +LA   R   K  II ITGS GKTTTKE++   LS   +  A  G+ NN IG
Sbjct: 84  PDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEGNLNNAIG 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H  EI  L+ +  P    IT+I  AHL  F   E +  
Sbjct: 144 VPLTLLSIKPETDIAIVEMGANHPHEIADLSRIAEPDYGYITSIGKAHLEGFGSFEGVIK 203

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQL 260
            KAE+++ L+    TI  N DD+  + L       G   +YSFG +   +        Q 
Sbjct: 204 TKAELYDYLKAHQKTIIYNADDTLQQSLVE-----GYANVYSFGTTDEVNVPVACVAVQP 258

Query: 261 RKWK------------QCSEQSWMEVQLQGKSMEV--VHHGIGYHMAQNMLMTLGIVSIL 306
              +               +  +++  ++G S     V H +G +   N+   +      
Sbjct: 259 VSIRFSEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGSYNFNNIAAAVAFGRYF 318

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   + +  + P   R +        G  TL+ ++YNANP+SM AAI  +  +   
Sbjct: 319 RLPAAAIKRGIEKYVPHNNRSQLMAW----GTNTLLLDAYNANPSSMAAAIHNVLTMPNF 374

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              +++ +LGDM E+G+ + + H  + + L+ +    V+L G H    K   P+      
Sbjct: 375 T--KKVLILGDMFELGDYAAAEHQQIVDSLTPHQWEGVYLVGQHFAQTKSPYPQ------ 426

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            ET +      +       ++++K S      RLI
Sbjct: 427 YETFEAFQEAFKQLTFTDSLILIKGSRGMALERLI 461


>gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
 gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 195/444 (43%), Gaps = 27/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    V 
Sbjct: 16  VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAEPDNERI--ILVS 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R      +I ITG+ GKTT+KE+++  L+   K +  +G+YNN +GV
Sbjct: 74  DALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  M    +  + E+G SH  +I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLITNVGRAHLEGFGSFEGVKKT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-- 266
           K E+++ L+     +FLN  +     L   +       I ++G+   AD +      C  
Sbjct: 194 KGELYDYLKAHNALLFLNESNP---DLVEMATERNFDRIITYGQDDTADVKGEVISCCPF 250

Query: 267 ------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 +  S    Q+     EV  + IG +   NML  + I      +      AL  +
Sbjct: 251 LKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLHFGVEPHKICHALESY 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +  +   N     LI ++YNANP+SMKAAI     +       ++A+LGDM E
Sbjct: 311 TPTNNRSQLIKTKDNN----LIVDAYNANPSSMKAAIENFRLMEVKN---KMAILGDMHE 363

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ +   H  + + +    I +VWL G +          + H      ++ +   I   
Sbjct: 364 LGDATAEEHQRIVDQIDASKIENVWLVGENFA------KTNCHFRKFANVEEVKAAIALK 417

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
                 +++K SN+   + L  LL
Sbjct: 418 KPTEHYILIKGSNTTKLFELPKLL 441


>gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
 gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
          Length = 464

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 203/452 (44%), Gaps = 26/452 (5%)

Query: 24  QGFVNGISIDSRSIAP-----QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
              +  +  DSR  A       + F A+ G  +D HDF+   + +GA  +V   D +A  
Sbjct: 25  NLPIRRVITDSRQAAAADERGTDLFVALVGDKHDAHDFVPAVLAQGALALVSRQDCIALS 84

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--- 135
           GS       V D L AL  LA A R      ++ ITGS GKTT KEML   L        
Sbjct: 85  GS-----LPVADTLAALQTLAAAWREAVNPMVLGITGSSGKTTVKEMLAAILRRQFGEAA 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             A  G++NNHIG+PLTL  +     + + E+GM+H GE+  LT +  P  A++     A
Sbjct: 140 VLATAGNFNNHIGLPLTLLALRPQQRYAVIEMGMNHFGELDALTRIACPDAALVNNALRA 199

Query: 196 HLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           H+   F G+ +IA AK+EI+ GL ++GT  +  +D + E+ +A   AL ++ I  FG  K
Sbjct: 200 HIGCGFDGVGDIARAKSEIYRGLPESGTALIPAEDEYAEVFRAACRALNLRQIE-FGVDK 258

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             +      +        ++  Q +   V     G H   N +    +       +  + 
Sbjct: 259 G-EVHAENVRLLPLGCRFDLVWQDQRAAVELPVPGKHNVANAVAAAALALQAGVGLSESA 317

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL+ F   +GR +R          T+ID++YNANP SMKAA+ VL ++       RI V
Sbjct: 318 TALAGFANIKGRLQR---KAGLRGSTIIDDTYNANPDSMKAALDVLVELPAP----RIFV 370

Query: 375 LGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +GDM E+G+  + + H ++        I   +  G   +   +A    +   +    D L
Sbjct: 371 MGDMGELGDDEAPALHAEIGRYARDKGIEAAYFVGDFSVEAAEAF--GVAGLWFAAKDPL 428

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +   L +   V+VK S       ++  L 
Sbjct: 429 QQVLVHELPEQASVLVKGSRFMQMEEVVAALQ 460


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 117/462 (25%), Positives = 199/462 (43%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++   I    IG   Q  ++ I  DSRS+    +  FFA+K    DGH +I     +
Sbjct: 4   SIEEITSVIGAERIGKH-QATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 V + L AL +LA   R + +  ++ ITGS GKT  K
Sbjct: 63  GVRNFVVTDVPEQLSHYADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSNGKTVVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E +   LS  K       SYN+ IGVPL++  M    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWIYQLLSPEKVITRSPRSYNSQIGVPLSVWMMNEHTELGIFEAGISEMGEMEALQPIIQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NFS ++     K ++F   +    I  N D+       +KS    
Sbjct: 183 PTIGVLTNIGWAHQENFSSLQGKCMEKLQLF---KDCDVIIYNGDNELISSCVSKSLFTS 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S   ++   F + K ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSMKDNERPLF-IEKIEKDDTGTTVKYRYLGFLKEYRIPFIDDASIENSLNALAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + ++   P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVSPEDIAERMAHLEPVA---MRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR  +L D+ E G+ S+  +  +A+++    +  +   G  + A        I 
Sbjct: 356 TEDKGRRRTLILSDILESGQPSKLLYRQVADLVHSRKVDRIIGVGEEISAAASRF--EID 413

Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  T   L    I SSL   +VV++K +    F  + +LL
Sbjct: 414 KRFFRTTAELIESGILSSLR-NEVVLIKGARVFHFDDITDLL 454


>gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 503

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 127/500 (25%), Positives = 197/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +LS+P   V D   AL ++A + +      ++A+TGS GKT+ K +L   
Sbjct: 67  VERL----LPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  A   
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPA 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I  +G    AD   R+ +  +  +   +       +V     G H   N L   G+
Sbjct: 243 QGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+  HP  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQAHPVAG---RQIAQTLPSGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ LVD                                       
Sbjct: 416 RV--FATHGELIDALQADLVDTASRETSTQQHASGNTQEHAVIHQQKSPSTAALSGAASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
 gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
          Length = 439

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 126/442 (28%), Positives = 196/442 (44%), Gaps = 25/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       FFA+KG  +DG+ F   A++KG    V++    A  G+  +    VD
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNGRL--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL    +LA   R R    +I ITG+ GKTTTKE++   L          G++NN +GV
Sbjct: 74  NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ LE   G +FLN  +     + A+        I S+G+ +  + +         
Sbjct: 194 KGELYDFLESHDGLLFLNESNPDLMEMAAQ---RNFGRIISYGRDEGGNVEGEVIDCSPF 250

Query: 268 -----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                 Q     Q+   + EV  H IG +   NML  + +             AL  + P
Sbjct: 251 LNFRWRQHLHAGQIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALGHYIP 310

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +      N+    LI ++YNANP+SM AAI     +      R++A+LGDM E+G
Sbjct: 311 SNNRSQLETTEHNR----LIVDAYNANPSSMAAAIDNFKLMKAE---RKMAILGDMLELG 363

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            +S   H    + L+   I  VWL G        A  +       + +D +   I +   
Sbjct: 364 AVSDEEHQKTVDALAAAGIKEVWLVGEEFGKTHTAFRK------FKNVDEVKAAIAAHRP 417

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +   +++K SN     +L  LL
Sbjct: 418 ENYYILIKGSNGIHLSQLPELL 439


>gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
          Length = 427

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 126/450 (28%), Positives = 211/450 (46%), Gaps = 27/450 (6%)

Query: 18  SIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           SI  +   F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++    
Sbjct: 2   SIIDLYDLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDY 61

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                       VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+   
Sbjct: 62  YIGERT----ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFN 117

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  A
Sbjct: 118 LLYTEGNFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRA 177

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL  F   E +   K E+++ + ++ G IF+  ++ + + +     A GI+ I ++G   
Sbjct: 178 HLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSI-----AKGIEQI-TYGNGD 231

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +A F   +   C        + QGK   V  H IG +   N+L  + +        +   
Sbjct: 232 DA-FASGQVVSCDPFLVFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRFFKIPAERIS 290

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A++ + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +
Sbjct: 291 RAIAAYEPTNNRSQFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQPKA---II 343

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G  S   H ++   +       V+L G H   +              T + + 
Sbjct: 344 LGDMRELGPTSDELHAEVVAQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMV 397

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++   + G  +++K S+S G  +L ++L
Sbjct: 398 EELRKQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 553

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 227/554 (40%), Gaps = 92/554 (16%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN--------GISIDSRSIAPQEAFFAIKGPHYD 52
           M+P+    +L++A  G                    G S DSR+I   EAFFA+KG ++D
Sbjct: 1   MDPI-RLKELIRATSGQLFFSADSAMRKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFD 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH F+  AV+ GA  +VV+    A +    +P   V+D L AL KLA   R     T++A
Sbjct: 60  GHAFVERAVRAGAVALVVSDLKCAELWQAELPTILVEDTLTALQKLAAYYRQNYLHTLVA 119

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKT+T+EM+  AL           + NN IGVP T+ ++    D  + E+GM H 
Sbjct: 120 ITGSVGKTSTREMIAAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHA 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G++  L+ L +P IAVIT I   H+        I  AKAEI  GL+  G + LN DD F 
Sbjct: 180 GDLTKLSRLAQPDIAVITNIGYCHIEQLGSQMAIMRAKAEIINGLKADGVLLLNADDPFL 239

Query: 233 ELLKAKSHALGIKTIY---SFGKSKNAD-FQLRKWKQCSEQ-SWMEVQLQ---------- 277
             L A+      +      +       D       K   +  +   ++LQ          
Sbjct: 240 RQLAAEQKGKIKQAFVALNTCPPDLPGDCLVATDVKIEVDGCASFIIKLQQAPDLEKYGT 299

Query: 278 -------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                   +   +     G H   N L  L    +L   +  A   L  F    G  +R 
Sbjct: 300 MEAFVDSNRLPRIKLPVPGEHHVINALFGLATAHLLHQPLTLAANGLRDFS-VIGNRQRI 358

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +N     LI+++YNA P S++A +  L  ++   + R IAVLG + E+G ++   H 
Sbjct: 359 ---MNADGVVLINDTYNAAPESIRAGVKTLCFLAHSEKRRAIAVLGGIAELGNMADRLHY 415

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-------------------------- 424
           +L   L+  +++ +WL G +V A+   +                                
Sbjct: 416 ELGRYLATADLAEIWLCGPYVAAVAQGIADGDQAGDQADSQAGGKGDRSPGASGTEPAVD 475

Query: 425 ------------HYSETMDGLFLFIQS-------------------SLVDGDVVVVKSSN 453
                       + SE+       I+                    ++ D D++++K S+
Sbjct: 476 LASESVALTATNYTSESRARAEATIKPPVKVHVFADRDSLTAELLPTIQDRDIILIKGSH 535

Query: 454 SCGFYRLINLLLEE 467
           S    ++ + ++ +
Sbjct: 536 SFAMEKVCDAIISK 549


>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 465

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 212/471 (45%), Gaps = 22/471 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  +G  P   V G +  DSR  +    + A +G + DGH F+  A+++G
Sbjct: 4   SAQWIADAVSGRLVG--PDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKT 120
           A  V+   ++  +     +    V+D   AL  LA A     R R    +IA+TGSVGKT
Sbjct: 62  AVAVIAERELEEA-----VAQIIVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   LS    T A   S+NN +G+PLT  +        + E+G S  G I +LT 
Sbjct: 117 TTKDLLLQILSEDGPTVAPKLSFNNEVGLPLTALQADETTRHLVLEMGASGPGHISYLTD 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +A+   +  AH+  F G E +A+AKAE+  G    G + LN DD   E +   + 
Sbjct: 177 IVSPDVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAMAPMAT 236

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 I  F       AD +  + +   ++++   +     S  V    +G H   N L
Sbjct: 237 G----PIVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRGSAPVSLALVGRHHVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356
                   L  D+DT    LS            +   +     TLID+SYNAN  SM+A 
Sbjct: 293 AAAAGALTLGMDLDTVAAVLSGARALSPHRMDVHDLDIEGTALTLIDDSYNANLDSMRAG 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I+ L+ I    +  RIAVLG+M E+GE S+S H  +  +++   +  +   G H     +
Sbjct: 353 IAALASI--GRDAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYLE 410

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 +   +         +     +G VV+VK S     +++ ++L E+
Sbjct: 411 GASGVANRTVASDPSDAARLVARFAEEGAVVLVKGSYGSQSWQVADILREK 461


>gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 492

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 210/471 (44%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++  A  G    G      V  + IDSR + P   F A+ G   DGHDF   
Sbjct: 1   MIAL-TLAEVAAATGGRLTAGADRLAPVTSVVIDSRQVGPGALFVALPGERVDGHDFAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV  GA  V+   +              V D   AL  LA   R  + AT++ +TGS GK
Sbjct: 60  AVAAGAVAVLGARETGVPT--------VVADPAAALAALAAHLRDLAPATVVGVTGSAGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L  +  T A +GS+NN IG+PLTL R   D  F + E+G   +G I  L 
Sbjct: 112 TTTKDLLADLLGRLGPTVAAVGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGIGHIATLC 171

Query: 180 HLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + RPH+ ++  +  AH+     G   IA+AK E+ E    TG + LN DD     +  +
Sbjct: 172 AVARPHVGLVLNVGSAHVGEYADGRNGIAAAKGELAEA--ATGLVVLNADDPLVAAMAGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     + +FG++  AD +  + +   +  +  ++   G+   +    +G H   N L
Sbjct: 230 AGA----QVVTFGRAAAADVRAERVEVGGDGRAAFDLLAGGERHRLRLGLVGAHQVANAL 285

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + + L      A  AL    P+     R           ++++SYNANP SM+AA+
Sbjct: 286 AAAAVATSLGLAPAEAAAALEEARPRSRW--RMEVTTTPDGVVVLNDSYNANPESMRAAL 343

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L  +     GR  AVLG M E+G  + + H  L  + +   +S +   G     +  A
Sbjct: 344 TALMDMRGA--GRAWAVLGPMGELGADADAAHDTLGRLAAGLGVSRLVAVGAGARRVHQA 401

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +    +   +D     + + +  GDVV+VK+S S G  R+   L
Sbjct: 402 AEHEGAWAGESTWVPGVDEAVALLAAQVRPGDVVLVKASRSFGLERVATGL 452


>gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
 gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 200/441 (45%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L  ++  T+F+++D+++   L   +H L +     +G   +            
Sbjct: 194 KGELYDYLREKEDSTVFIDHDNAY---LMDIAHGLNL---IPYGSEDSLYV---NGHVTG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      G   +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPR 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVK---KKMLILGDMRELGA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + L   +   V L G    A           H       +   +Q+    
Sbjct: 358 ESAAEHRKIVDFLQECSFEKVLLVGEQFTATH------PPYHTYANAQEVIKELQTEKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN      ++  L
Sbjct: 412 DYTILIKGSNGIKLSTVVEFL 432


>gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
 gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
          Length = 494

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 214/494 (43%), Gaps = 40/494 (8%)

Query: 8   HDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +     G  +   + P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA
Sbjct: 6   KQIAACTGGSFMVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              +V   +  ++      L   V  V D   A+  +A   R      +IA+TGS GKTT
Sbjct: 66  VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK ++   L+S   T A  G+ NN +GVP TL     D    + E+GM   G++  L   
Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSH 240
           VRP   ++  +  +H+      E IA AKAE+   L +  G  F+N DD + + ++  + 
Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245

Query: 241 --ALGIKTIYSFG--------------KSKNADFQLRKWKQCSEQ-SWMEVQLQG----- 278
             A  ++T+   G              ++        + +   +      +   G     
Sbjct: 246 LDARRVETVLFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGFADAP 305

Query: 279 --KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             ++        G H   N      +       +     AL+   P+ GR +  R    +
Sbjct: 306 EEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRA---R 362

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FT+++++YNANP SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  
Sbjct: 363 GGFTVVNDAYNANPDSMRASLATFCALD--VPGKHVAVLGDMGELGSYAPACHAGIGEFA 420

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   +  +   G   L + DA  R+      +  + ++  +F  + + +  GD V+VK+S
Sbjct: 421 ATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKAS 480

Query: 453 NSCGFYRLINLLLE 466
           +  G  R++  L+ 
Sbjct: 481 HFMGLTRVVEGLVN 494


>gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 427

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 199/440 (45%), Gaps = 30/440 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+  DSR I     FF+++G +++G+ F   A++ GA   V++ +              
Sbjct: 14  SGVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKEN---YIQ 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R + K  II ITGS GKTTTKE++   L +  KTY   G+ NNHI
Sbjct: 71  VDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL+L  +  + +F + E+G +H+GEI  L+ +  P+   IT    AHL  F   E + 
Sbjct: 131 GVPLSLLEISENTEFAVIEMGANHIGEIELLSKIAEPNYGYITNFGKAHLEGFGSEEGVI 190

Query: 208 SAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++E L + +G IF N DD      K K         + FGK +  D     +   
Sbjct: 191 KGKSELYEFLTESSGFIFYNSDDE-----KQKHILSNYNKKFGFGK-EAGDL---NYLVK 241

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +E   + V++  K+ +      G +   N++  + I   L   V+     +S +     R
Sbjct: 242 AENPNIVVEVNNKTFKSTL--FGNYNIPNVISAISIGIFLGVPVEKVKNGISDYISSNNR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N     +I ++YNANP+SM  AI             ++ +LGDM E+G    
Sbjct: 300 SQILKINSNN----VILDAYNANPSSMLLAIKAFQNAELEN---KVLILGDMFELGRDEN 352

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            FH ++ +  +  +I  V+L G         +    S +               SSL   
Sbjct: 353 KFHQEIVDYCNNLDIERVFLVGEIFSKTNYSNKFISSHNYIELSNKKEFKEIKHSSL--- 409

Query: 445 DVVVVKSSNSCGFYRLINLL 464
              ++K S      ++++ +
Sbjct: 410 ---LIKGSRGIELEKILDYI 426


>gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 503

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 127/500 (25%), Positives = 198/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +LS+P   V D   AL ++A + +      ++A+TGS GKT+ K +L   
Sbjct: 67  VERL----LPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  A  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGIWFEQQLQAQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I  +G    AD   R+ +  +  +   +       +V     G H   N L   G+
Sbjct: 243 QGRCIVRYGLQIGADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+  HP  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQAHPVAG---RQIAQTLPSGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ LVD                                       
Sbjct: 416 RV--FATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 204/441 (46%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L  ++  T+F+++D+++   L   +H L +     +G S++A +         
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHGLNL---IPYG-SEDALY--VNGHVTG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      G   +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPR 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVK---KKMLILGDMRELGA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + L   +   V L G    A           H       +   +Q+    
Sbjct: 358 ESAAEHRKIVDFLQECSFEKVLLVGEQFTATH------PPYHTYANAQEVIKELQTEKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN      ++  L
Sbjct: 412 DYTILIKGSNGIKLSTVVEFL 432


>gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 638R]
          Length = 432

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 198/441 (44%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L  ++  T+F+++D+++   +    +      +  +G   +            
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLMDIAHDLN------LIPYGSEDSLYV---NGHVTG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      G   +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPR 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---KKMLILGDMRELGT 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + L   +   V L G    A           H       +   +Q+    
Sbjct: 358 ESAAEHRKIVDFLQECSFEKVLLVGEQFTATH------PPYHTYANAQEVIKELQTEKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN      ++  L
Sbjct: 412 DYTILIKGSNGIKLSTVVEFL 432


>gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
 gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
          Length = 504

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 144/507 (28%), Positives = 212/507 (41%), Gaps = 52/507 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +      I    PQ  V G +  DSR I P   F A+ G   DGHDF  
Sbjct: 1   MIELTT-QKIAEVSGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------------LNKLAVAARL 104
            A+  GA L++V   +      L+ PV   +    A              L  +   AR 
Sbjct: 60  AALNSGAALLIVGRPVEQP-ALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARY 118

Query: 105 RSK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            +          ++ +TGS GKT+TK+++   L    +T A  GS+NN IG+P T  R  
Sbjct: 119 NTDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAG 178

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  F + E+    +G I+ LT +  P + V+  +  AHL  F   + IA AK E+ E L
Sbjct: 179 RDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL 238

Query: 218 EK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-------ADFQLRKWKQC- 266
                 G   LN DD     +  ++ A     +  F            AD+     +   
Sbjct: 239 PAAADGGLAVLNADDDKVAAMDKRTAA----RVVRFSTEGATGAAGVPADYYATDIELDA 294

Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +  S+M     G+ + V     G H   N L    +   +  D  T    LS       
Sbjct: 295 VARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSSHVAASV 354

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR----IAVLGDMCEM 381
                R   + G  T+I++SYNANP SM+A I  L+  +   +GRR     AVLG M E+
Sbjct: 355 NRMDVRTRESDG-VTIINDSYNANPESMRAGIDALAYTA---KGRRDAASWAVLGQMGEL 410

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPR-SIHVHYSETMDGLFLFIQ 438
           GE +   H +L  VL+   I H  +   G +  AL +A     +     E +DG   ++ 
Sbjct: 411 GEDASDEHAELGHVLAQRRIDHAVIVGNGVNQRALANAARESGVETQVVENIDGAVNYLD 470

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465
            SL   DVV++K+S S G + +   LL
Sbjct: 471 MSLNPQDVVLIKASYSDGLWAVAEGLL 497


>gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 434

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 209/460 (45%), Gaps = 28/460 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   L  A   H +          ++ DSR   P   FFA+KG  +DG+ F   A++KG
Sbjct: 1   MTIEQLYAAYLAHPM----------VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKG 50

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             L VV+   V            VDDVL AL +LA   R      +I ITG+ GKTTTKE
Sbjct: 51  CALAVVDDPSVVRDER----YLLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKE 106

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS+        G+ NNHIGVPLTL R+  +    I E+G +  G+I  LT + RP
Sbjct: 107 LMAAVLSTTYPVLYTEGNLNNHIGVPLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARP 166

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALG 243
           +  +IT I  AHL  F  +E +   K E+++ +  + G +FLN+DD     +     +  
Sbjct: 167 NFGLITNIGRAHLQGFGSLEGVRRTKEELYDFIRAEGGILFLNFDDDTLIDMSQGLQS-- 224

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S+G S +A  +       +    +++       +V  + +G +   N L  +   
Sbjct: 225 ----VSYGTSADATVRGLIVANNTPYLCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAG 280

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +  + AL+ + P   R +           +LI ++YNANP SM+AA+     +
Sbjct: 281 RFFDVPDEAIVSALATYKPSNNRSQWIETER---GNSLIVDAYNANPVSMRAALDNFDSL 337

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H +   + +LGDM E+G  S+  H+ L E ++      + L G  + AL D+ P    
Sbjct: 338 --HTDKPLVLILGDMNELGAESKREHMALLERINTGRYRQILLCGPCLTALADSFPGGAT 395

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                    L  ++++  +   ++++K S+     ++I L
Sbjct: 396 G--FADNAVLEEYLKAHSIHDSLILLKGSHGIHLEKIIPL 433


>gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
 gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
          Length = 439

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 126/442 (28%), Positives = 196/442 (44%), Gaps = 25/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       FFA+KG  +DG+ F   A++KG    V++    A  G+  +    VD
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNGRL--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL    +LA   R R    +I ITG+ GKTTTKE++   L          G++NN +GV
Sbjct: 74  NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ LE   G +FLN  +     + A+        I S+G+ +  + +         
Sbjct: 194 KGELYDFLESHNGLLFLNESNPDLMEMAAQ---RNFGRIISYGRDEGGNVEGEVIDCSPF 250

Query: 268 -----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                 Q     Q+   + EV  H IG +   NML  + +             AL  + P
Sbjct: 251 LNFRWRQHLHAGQMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALGHYIP 310

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +      N+    LI ++YNANP+SM AAI     +      R++A+LGDM E+G
Sbjct: 311 SNNRSQLETTEHNR----LIVDAYNANPSSMAAAIDNFKLMKAE---RKMAILGDMLELG 363

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            +S   H    + L+   I  VWL G        A  +       + +D +   I +   
Sbjct: 364 TVSDEEHQKTVDALAAAGIKEVWLVGEEFGKTHTAFRK------FKNVDEVKAAIAAHRP 417

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +   +++K SN     +L  LL
Sbjct: 418 ENYYILIKGSNGIHLSQLPELL 439


>gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-064]
          Length = 392

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 187/402 (46%), Gaps = 15/402 (3%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                 D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++
Sbjct: 1   ATFWQKDVPNPPMDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIM 58

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P I
Sbjct: 59  AAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDI 118

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G   
Sbjct: 119 AIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFR 173

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +     +
Sbjct: 174 QLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREI 232

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +    AL      +    R      +    +++++YN++P ++K  +     +   
Sbjct: 233 GIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSS 289

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---H 423
           G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A  D     I    
Sbjct: 290 GKP-KYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGK 348

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 349 VHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 390


>gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
 gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
          Length = 437

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 204/443 (46%), Gaps = 26/443 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GIS D+R++     F A++G +++G+ +   A+  GA  V+V+   + ++G+ S     
Sbjct: 19  SGISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDPKLKNLGANS---IV 75

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L +LA   R +    II ITGS GKTTTKE++   LS   K  A  G+ NNHI
Sbjct: 76  VEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNLNNHI 135

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +    I E+G +HL EI+ L  +  P+   IT    AHL  F G++ + 
Sbjct: 136 GVPLTLLELTKEHQIAIIEMGANHLDEIKNLCCISLPNWGYITNFGKAHLEGFGGVDGVI 195

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++  L E+   I +N DD        +        + SFG  K   FQ+   ++ 
Sbjct: 196 KGKSELYNHLIEQQQKILINGDDPL------QIKQTKNYPVSSFGHGKENTFQISTNEKD 249

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   +++    +      +  G +   N+   +    I      +  KA+  +     R
Sbjct: 250 DE---LQLTYNDQIFT--SNLYGAYNLNNIAAAILFGYIFEVPTKSIQKAIQKYQATNNR 304

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            ++ +        ++I ++YNANP SM+ AI    +I+     + + ++GDM E+G  S+
Sbjct: 305 SQKIKIK----NTSIILDAYNANPTSMEHAIKAFKKIATQ---KSVLIMGDMKELGVESE 357

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-DGD 445
             H  + +         + L G      KD    +  V   + ++    FI +    D D
Sbjct: 358 KEHQQIVDYCLEMKFEQIDLIGPLFSKTKDV---ADMVRKHKNLNSFTNFINAQSQLDFD 414

Query: 446 VVVVKSSNSCGFYRLINLLLEEF 468
            +++K S S     L+ L   + 
Sbjct: 415 HIMIKGSRSMKLETLLPLFESKL 437


>gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 468

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 198/451 (43%), Gaps = 23/451 (5%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++   + G  IG           ID R   P   F A  G H DGHD+   A + GA  
Sbjct: 2   DEIASLVGGKVIGDGSVTVSAPAVIDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAVA 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEM 125
           V+ +          ++P   VDD   AL +LA    A LR   T++AITGS GKT+TK+M
Sbjct: 62  VLGSRP-------TTLPTVVVDDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKDM 114

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LSS   T A  GS+NN +GVPLT+ R      F + E+G  H+G+I  LT LV P 
Sbjct: 115 IEAVLSSAAPTVATSGSFNNELGVPLTMLRADATTRFLVLEMGARHIGDIAELTGLVAPD 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T +  AHL  F   E IA AK+E+  GL   GT  L+ DD     +   +      
Sbjct: 175 IAVVTNVGQAHLGEFGSREAIAVAKSELVRGLAGGGTAVLHADDPRVLAMSDLTDG---- 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + +FG  + A  ++R             ++    +  V    +G H A N         
Sbjct: 231 PVLTFGAGERAGVRVRDLALDRLGRPSFALRHDDATAVVTLPFVGAHWALNAAAAAAAGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +  A  AL+     +    R       G  TL+++SYNANP S +A +  L+ I 
Sbjct: 291 AAGVGLGQAATALNTASISKW---RMELRALSGGATLLNDSYNANPESTRAGLDALAAIE 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG+M E+GE S+  H ++    +      V   G     + D        
Sbjct: 348 A---RRRIAVLGEMLELGETSRDAHHEIGTYAATR-ADLVLTVGEAAAVIADGA--GAKA 401

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                      +++S L  GDVV+VK S   
Sbjct: 402 VALPDNAAAIDWLRSHLAPGDVVLVKPSRGA 432


>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
 gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
          Length = 456

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 201/471 (42%), Gaps = 19/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M      + +   +    +G      V+G++IDSR+++  + F A++G   DGHD++  A
Sbjct: 1   MIEALDLNAIATRLGAEVLGATDALRVSGVAIDSRTVSAGDLFVALRGERVDGHDYVAAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +V    ++ IP   V   +  L+ +A   R + +  ++ ITGS GKT
Sbjct: 61  -----HAGGAVAAVVEEPVAVEIPQLQVAASVDVLSLIAGMVREQYRGVLVGITGSAGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K +L   L+    T A  G+ NN IGVPLTL R+   ++F + E+G    G+I  L  
Sbjct: 116 SAKTLLASVLAEAGPTLATSGNQNNEIGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCA 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP I  +   APAHL+N+  ++ IA  K EI   L        N D  + ++ +  + 
Sbjct: 176 VARPGITALLNAAPAHLANYDSVDAIARTKGEILAALGSGDLGVFNGDQRYADVWREMAA 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              ++   +FG SK  D +    +    + +   V+      +V     G     N L  
Sbjct: 236 PAEVR---TFGMSKGVDVRAINIQYEGYKGTHFRVKTPEDGFDVALKLPGSPGVYNALAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L        + L    P+ GRG+  R +       ++D+SYNANP ++ AAI  
Sbjct: 293 IAIAGALGLSPAAIARGLEKVSPERGRGRALRASS---GAQIVDDSYNANPVAVAAAIDT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRR  +LG M E+G  +  FH ++        +  +   G       +   
Sbjct: 350 LAMTP----GRRSLILGPMLELGPKTDEFHREMGVRAKEAGLDRLITVGEATRPAAEGFG 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            S    +      L   +      GD V+VK S       +++ LL E  A
Sbjct: 406 GSPQ--HFADNSALLSAL-PDFTSGDTVLVKGSRGARLEVVVDALLGELEA 453


>gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
 gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
          Length = 461

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 126/471 (26%), Positives = 206/471 (43%), Gaps = 26/471 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   + + + G  +   P   V+  +  DSR   P   F A+ G H DGHD+       
Sbjct: 4   MTLGKIAKVVGGT-VAGDPDIVVDAPAYVDSRQAVPGGLFVAVVGEHVDGHDYAA----- 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +            P   V D + AL KLA     R  AT++A+TGS GKT TK
Sbjct: 58  GAHAVLGSRPTE-------APTIVVRDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTK 110

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + L   LS+   T A  GS+NN +G+PLT+ R   +  + + E+G   +G I+ L  +  
Sbjct: 111 DYLARILSAAGSTVATSGSFNNELGLPLTVLRAHPETRYLVLEMGARRIGHIKHLCEIAP 170

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A +  +  AH+  F   + IA AK EI   L+  GT  LN  D     + +++ A  
Sbjct: 171 PDVAAVLNVGTAHIGEFGSRDSIAFAKGEIVAALQPEGTAVLNAGDPLVAEMTSRTRA-- 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + ++G   +AD   R  +         E+    +   V     G H AQN L    +
Sbjct: 229 --RVLTWGPD-DADVSERGSEVDDLGRPSFEIGYDDEWYPVRLQQSGLHQAQNALAAATM 285

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +      LS          R           +++++YNANPAS+ AA+  L+ 
Sbjct: 286 ALAVGIPLADIAAGLSAATASSP--MRMEVHERADGLIVVNDAYNANPASVVAALESLAV 343

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           I      R +AVLG+M E+G  S   H+ +    +      V + G     + + L    
Sbjct: 344 IGRRRHRRTVAVLGEMLELGRESFDGHVRVGRAAARLGTDIVVVVGAAAGGIVEGLEAVA 403

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                   +E ++    +++ +++ GDVV+VK+S+    + + + LL+  P
Sbjct: 404 AWRGDGVVAEEVEEALEWVRENVLSGDVVLVKASHGVALWEVADALLDTDP 454


>gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 463

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 235/475 (49%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M  L+   D+   +    IG      +N ISIDSR I       F AIKG  ++G  FI 
Sbjct: 1   MINLY-LKDIALILNAKLIGN--NCKINSISIDSRKIFNKKNCLFIAIKGKKFNGECFIK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +++ GA  V+    +     +++IP   V + + +L +L+   R  SKA IIAITGS G
Sbjct: 58  ESIKNGAVAVINARKV-----NINIPHLIVKNTIISLLRLSKWIRENSKAKIIAITGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+ KE++   L++   T A   ++NN+IGVPLTL R+  + +F I E+G +  GEI+  
Sbjct: 113 KTSVKEIIFNILNTFSNTIATKKNFNNNIGVPLTLLRLNKNHNFAIIEVGGNKFGEIKTS 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLK 236
           ++L++P IA+I  I+ +HLS F  I  ++ AK EIF G+  +K G I LNY+ + ++  K
Sbjct: 173 SNLIKPDIALINNISESHLSGFKSINGVSKAKEEIFSGIQGKKNGIIVLNYNSNDWKEWK 232

Query: 237 AKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            K   L    ++ FG  K+K   F L+  K+ +      +  Q +  EV    IGYH   
Sbjct: 233 KK---LKDNLVFWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKEECEVSLPLIGYHNLF 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + I  ++ A +++               +R           +ID+SYNAN  SM 
Sbjct: 290 NAMAAIAISFLVGASMESIKYG---LKKSYPFKRRLFPIFLNKNKIIIDDSYNANVGSMI 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AISVL+ +     G +I ++GD+ E+G+  +   H ++   +S   I+ V+  G+    
Sbjct: 347 SAISVLNNMP----GYKIIIIGDILELGKQKEIIIHKNIGFFISKSKINKVFSIGYLSYF 402

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLE 466
                 +  H +    +D L       +       V++K SN    Y ++ +L E
Sbjct: 403 SSIFSKKGKHFY---NIDYLISETIKMISRYPIITVLIKGSNKTDAYNIVKMLQE 454


>gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
 gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
          Length = 420

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 123/435 (28%), Positives = 201/435 (46%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  +DG+ F   A++KG  L VV+   V            VD
Sbjct: 2   VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDER----YLLVD 57

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R      +I ITG+ GKTTTKE++   LS+        G+ NNHIGV
Sbjct: 58  DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 117

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +    I E+G +  G+I  LT + RP+  +IT I  AHL  F  +E +   
Sbjct: 118 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNIGRAHLQGFGSLEGVRRT 177

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ +  + G +FLN+DD     +     +       S+G S +A  + R     + 
Sbjct: 178 KGELYDFIRAEGGILFLNFDDDTLIDMSQGLQS------VSYGTSADATVRGRIVANNTP 231

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +++        V  + +G +   N L  +          +  + AL+ + P   R +
Sbjct: 232 YLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKPSNNRSQ 291

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                      +LI ++YNANP SM+ A+     +  H +   + +LGDM E+G  S+  
Sbjct: 292 WIETER---GNSLIVDAYNANPVSMRVALDNFDSL--HTDKPLVLILGDMNELGAESKRE 346

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H+ L E ++      + L G    AL D+ P             L  ++++  +   +++
Sbjct: 347 HMALLERINTGRYRQILLCGPCFTALADSFPGGATG--FADNAVLEEYLKAHSIHDSLIL 404

Query: 449 VKSSNSCGFYRLINL 463
           +K S+     ++I L
Sbjct: 405 LKGSHGIHLEKIIPL 419


>gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter sp. PRwf-1]
 gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. PRwf-1]
          Length = 505

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 138/499 (27%), Positives = 216/499 (43%), Gaps = 49/499 (9%)

Query: 4   LWTFHDLLQAI---QGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +WT   LL A     G  IG             I  D+R I   + F AI G ++DGH F
Sbjct: 12  IWTPEQLLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSF 71

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITG 115
           +  AV+KGA   +V+      +  +++P   VDD   A  ++A   R +     +IA+TG
Sbjct: 72  VASAVEKGAIATIVS----QPLSEVNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTG 127

Query: 116 SVGKTTTKEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           S GKTT KEML    + ++         T    G+ NN  GVP+ L  +     + + EL
Sbjct: 128 SSGKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLEL 187

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G +H+GEI +   +V+P +A I  I  AHL  F G + IA  KAEI++ L +  T  +  
Sbjct: 188 GANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQPLTQASTAVVPC 247

Query: 228 DDSFFELLKAKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQ--LQG 278
           DD + + L + +      TI  FG        +K       + K  + QS  ++   ++G
Sbjct: 248 DDDYSDQLMSTAKQHTD-TIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAIEG 306

Query: 279 KS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           K+   + V+    G H   N L             +   + L+     +GR  R R    
Sbjct: 307 KAPAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRL--- 363

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G   +ID++YNANP SM+AA  VL+      EG RI VLGD+ E+G+ + S H  L E 
Sbjct: 364 -GQHHIIDDTYNANPNSMRAAADVLAA----QEGTRILVLGDIGELGDDAVSEHYKLGEA 418

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS------SLVDGDVV 447
           ++   + ++  +G                  +  +T   L   +               +
Sbjct: 419 IANKAVDYMLCAGEFAKDTVAGASSQGMTQAYSFDTKADLLPKLIELVQTQQQQGQLCTL 478

Query: 448 VVKSSNSCGFYRLINLLLE 466
           + K S +     LI+ L +
Sbjct: 479 LFKGSRTTTMETLIDDLTQ 497


>gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
 gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
          Length = 432

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 198/441 (44%), Gaps = 30/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L  ++  T+F+++D+++   +    +      +  +G   +            
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLMDIAHDLN------LIPYGSEDSLYV---NGHVTG 244

Query: 268 EQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++  +      G   +V    IG +   N L  + I      +     +AL+ + P+
Sbjct: 245 NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPR 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    TLI ++YNANP SM AA+     ++     +++ +LGDM E+G 
Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---KKMLILGDMRELGT 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S + H  + + L   +   V L G    A           H       +   +Q+    
Sbjct: 358 ESAAEHRKIVDFLQECSFEKVLLVGEQFTATH------PPYHTYANAQEVIKELQTEKPK 411

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN      ++  L
Sbjct: 412 DYTILIKGSNGIKLNTVVEFL 432


>gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
 gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
          Length = 493

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 208/468 (44%), Gaps = 23/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G   G       V    +DSR + P   F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVAAATGGRLDGGADAATLVTAAVVDSRLVEPGALFVALPGARVDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                 G V      V +   +S+P   V D  GAL  LA   R  +KAT++AITGS GK
Sbjct: 59  ------GAVAAGARAVLAARPVSVPAVLVADPAGALMALAAHVRTLTKATVLAITGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L S+  T A  GS+NN IG+PLTL R+  D ++   E+G   +G I  L 
Sbjct: 113 TTTKDLLADLLGSLGPTLAPPGSFNNEIGLPLTLLRLEPDTEYVALEMGARGIGHIAALC 172

Query: 180 HLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + RP + V+  +  AH+     G   IA AK E+ E    T  + LN DD     ++ +
Sbjct: 173 QVARPQVGVVINVGSAHVGEYADGRAGIAQAKGELAEA--ATDVVVLNADDPLVAAMRPR 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + + +FG + +AD +  +    +   +  ++    +   V    +G H   N L
Sbjct: 231 AAG---RRVVTFGVAADADVRAERIALDAAGRASFDLVTDAERHRVALALVGEHQVGNAL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   +      A  AL+   P+     R           +++++YNANP SM+AA+
Sbjct: 288 AAAAAALAVGMTPTAAAAALAAARPRSRW--RMEVTTAPSGLVVVNDAYNANPESMRAAL 345

Query: 358 SVLSQISPH---GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLA 413
             L  +         R  AVLG M E+G  +++ H +L    +   +    + G      
Sbjct: 346 RALVGLGADGGPDRRRTWAVLGPMGELGTAAEAEHAELGRFAARLGVDRTVVIGEAARPL 405

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLV-DGDVVVVKSSNSCGFYRL 460
            + A      V +   +D     + ++ + D DVV+VK+S + G  R+
Sbjct: 406 AQAAAGAGARVDWVADVDAAAELLATAALGDADVVLVKASRAAGLERV 453


>gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 503

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 197/500 (39%), Gaps = 59/500 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +LS+P   V++   AL ++A   +      ++A+TGS GKT+ K +L   
Sbjct: 67  VGR----LLPALSVPQVVVENAELALARVAAGMQRDRATRVLALTGSNGKTSVKALLLSI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    +      YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + +P
Sbjct: 123 LQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242
           H+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  +
Sbjct: 183 HVALVNNIAPAHLERLGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWFEQQLLAQPV 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + I  +G   +AD   R+ +  +  +   +       +V       H   N L   G+
Sbjct: 243 QGRRILRYGLHISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPARHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+  HP  G   R           LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPVIAAGLAQAHPVAG---RQIAQTLPSGAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGDGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGG 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD------------------------------------- 445
            V    T   L   +Q+ L D                                       
Sbjct: 416 RV--FATHAELIDALQADLFDAASRETRTQQHASGNTQEHAVIHQQQSPSTADLSGAASI 473

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            ++VK S      R++  LL
Sbjct: 474 TILVKGSRGSAMDRVVTALL 493


>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 419

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 129/460 (28%), Positives = 211/460 (45%), Gaps = 46/460 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +     ++ +     +NG+  D+R       F A+ G ++D HD+I HA + GA 
Sbjct: 6   LKEIAKIFNSQAL-LGSDIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +  +       ++PV  VDD   AL+ +A       K T++AITGS GKTTTK ML
Sbjct: 65  AIIASKQV-----KTNLPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNML 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+    T    G+ NNH+GVP+TL  +     F + E+G +HLGEI+ L  +  PHI
Sbjct: 120 ANILNLKAPTLKTQGNLNNHLGVPMTLLMLEPKHQFAVIEMGANHLGEIKHLRDITHPHI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T    AH+  F G   +  AK EI+    +     +N + +F   +           
Sbjct: 180 AVVTNTLDAHIGEFGGFNNLVKAKGEIYHTNSQN---IVNTNTTFTGDI----------- 225

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             SFG  K+ D               ++ ++ + + V    +G H  +N L        L
Sbjct: 226 --SFG--KDGDVFASNINSH----QFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYAL 277

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D++T  K L     ++GR       +++   T+ID++YNA+P SM+AAI  L      
Sbjct: 278 DIDINTIKKGLEKTQAEKGRL----TIIHRQGLTIIDDTYNASPQSMRAAIDALLSFD-- 331

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G +IAVLG M E+G  S++FH  + + L+  ++   +  G         L +     +
Sbjct: 332 --GEKIAVLGSMAELGNDSKTFHQQIGK-LAKVSLDTFYTYGE--------LAKDYGGIH 380

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            E +  L + I +       V+VK S       L+ LL +
Sbjct: 381 FEDLHKLSMHILTKY-SNATVLVKGSRMVKLDHLVQLLQK 419


>gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
 gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
          Length = 459

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 206/452 (45%), Gaps = 31/452 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +N IS++S+     + F AI+G    G+++I  A++KGA  V  N          +   F
Sbjct: 23  INKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYAVYDNAHADIKEEYKN-KTF 77

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D +  L K A   R      +I ITGS GKTT K++    LSS  K     G+YNNH
Sbjct: 78  FVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGNYNNH 137

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL R+  D  F I E+GMS  GEI  L  +  P I++IT I  +HL      E +
Sbjct: 138 IGLPFTLLRLEKDDKFIILEMGMSGFGEIELLGKISNPDISIITNIGESHLEFLHTKENV 197

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQ 265
             AK E+    ++   + +N DD + + +   S    IK +    K+ + ++F       
Sbjct: 198 FKAKTELLPYTKE--VLIINGDDDYLKNINE-SSLKTIKVLRKDSKNIEKSNFYYGNINF 254

Query: 266 CSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             + S   ++   K  E         + +G H   N+ M + +      +     + +  
Sbjct: 255 DEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNILNLTMAIAVAKQFGIEDKDIEETVKN 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               + R +       +G    I+++YNA+PASMK ++   S+I  + +  +IAVLGDM 
Sbjct: 315 IKLTDMRFQ----ITEKGNTIYINDAYNASPASMKKSLETFSEI--YNDRMKIAVLGDML 368

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---------SIHVHYSETM 430
           E+GE     H D+ E L    ++ ++L G  + +L D + +         +  V +    
Sbjct: 369 ELGENELELHSDIYETLRNIKLNKLYLFGERMKSLYDRVKKESQEKNSDENSEVEHFSDK 428

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           + +   ++  + D  V+++K S       ++ 
Sbjct: 429 NKIKEKLKE-ITDEKVILIKGSRGMKLEEIME 459


>gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
 gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
          Length = 467

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 137/475 (28%), Positives = 201/475 (42%), Gaps = 25/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G    +  P   V  + +DSR +     F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                   V      V +  S+  P   V D   AL  LA   R  + AT++A+TGS GK
Sbjct: 59  ------AAVAAGASAVLAARSVGEPAVIVPDPPSALAALAAYVRDLAAATVVAVTGSAGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L  +  T A  GS+NN IG+PLTL R   D  F + E+G    G I  L 
Sbjct: 113 TTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGPGHIATLC 172

Query: 180 HLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + RP + V+  +  AHL     G   IA+AK E+ E   +   + LN DD     +  +
Sbjct: 173 AVARPAVGVVLNVGSAHLGEYADGRLGIAAAKGELAEAASE--AVVLNADDPLVAAMAVR 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     + +FG+   AD +           +  ++   G+   V    +G H   N L
Sbjct: 231 TTA----EVITFGEGGRADVRAGAVDVDRLGRASFDLLAHGEHHRVTLGLVGAHQVPNAL 286

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L    D    ALS   P+     R           +++++YNANP SM+AA+
Sbjct: 287 AAAAVAIRLGLSPDRVAAALSAARPRSRW--RMEVTSTAAGVVVVNDAYNANPESMRAAL 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-- 415
             L  +    +GR  AVLG M E+G+ + + H  L        +  +   G     +   
Sbjct: 345 KALVDMRG--KGRAFAVLGPMGELGDAAAAEHDVLGRFAVRLGVDRLIAVGPAARHIHLG 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEEF 468
            +L  S      E  D        +   G  DVV+VK+S S G  R+   L+  F
Sbjct: 403 ASLEGSWDGESVEVTDAEEAVALVAAQAGPDDVVLVKASRSFGLERVAEALVTRF 457


>gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 459

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 213/475 (44%), Gaps = 29/475 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L +F ++  A+QG  +         +G+S DSR++ P++ F  ++G H DGH F+  A+Q
Sbjct: 2   LLSFDEVCAAVQGARVCDARGARGFDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQ 61

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATI-IAITG 115
           KGA   +++     +   ++           V D L AL  LA     +  A I I ITG
Sbjct: 62  KGAVATLIDQRYPHAGEYVAWCTRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTT KEM     S   +  A  G+ N+ IG+P +L  +  + + GIFELGM+  GE+
Sbjct: 122 SSGKTTVKEMARAVFSERYRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEM 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R L  ++ PH A+IT +  AH+      + IA  K EIF    +    F+  DD++   L
Sbjct: 182 RTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVP-DDAYRVFL 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               +      +  + +            +    S   V  QG+ +       G H A+N
Sbjct: 241 SNIPYG----RVVVYDQGGRG-LATEVIDEGLRGSR--VLYQGRWI--RVPLPGVHNAKN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + + + +    +   + +    P  GR      +L     T + + YNANP SM A
Sbjct: 292 ALAVIALAAQVGLPAEEIQRGMERVKPPFGRSHVVCASL-----TFLLDCYNANPDSMAA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LAL 414
           A+ + + IS      ++ VLGDM E+G  +   H  +  + +  +   V++ G     A+
Sbjct: 347 ALHLCAHISAVS---KVYVLGDMGELGVTAAEAHYRVCVLAAASDARAVYVFGPEFCRAV 403

Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +        V+    E +  L   + + L  GD V+VK S S    RL  LL +E
Sbjct: 404 RKVSWGRKRVYAFALEELSALQETLDAQLRRGDFVLVKGSRSVALERLEPLLRKE 458


>gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
 gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
          Length = 436

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 194/443 (43%), Gaps = 29/443 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ DSR       F A++G ++DG+ F   A++KG    +V+                V
Sbjct: 16  QITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQKYQKPDDSR--YILV 73

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L    +LA   R R    II ITG+ GKTTTKE+++  L          G++NN +G
Sbjct: 74  DNCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGNFNNDVG 133

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+       + E+G SH G+I+ L  +V P   +IT +  AHL  F   E +  
Sbjct: 134 VPKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNVGKAHLQGFGSFEGVIR 193

Query: 209 AKAEIFEGLEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            K E+++ L        +F+N D+ +   +          T+  +GK  + +  ++  + 
Sbjct: 194 TKGELYDYLRAKQGGNKVFINADNPYLMNISQ------GLTLIKYGKRDDCELSVKG-EV 246

Query: 266 CSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                +++ +      G   EV    IG +   NML    I            +ALS + 
Sbjct: 247 TGCSPFLDFRWYNTQAGHWNEVHTRMIGAYNIDNMLAAACIGLHFGISEADIDEALSKYT 306

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +      N+    LI ++YNANP SM AAI     +       +IA+LGDM E+
Sbjct: 307 PSNNRSQLTVTNDNK----LIVDAYNANPTSMHAAIENFKAMHVSP---KIAILGDMREL 359

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S+  H  +A+ L   +  +VWL G      K    +         ++ +   +Q++ 
Sbjct: 360 GNASKEEHQRIADELKTADFDNVWLVGEEFYNTKSGFRK------FHNIEEVKTALQTNK 413

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN     +L  LL
Sbjct: 414 PKGCYILIKGSNGLHLSQLPELL 436


>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. WH 7803]
 gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 7803]
          Length = 471

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 195/448 (43%), Gaps = 25/448 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P   F  ++G  +DGH F+  AV++GA    V +D   ++    +  + V 
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVASDCAHAVPDGLL-HWKVA 90

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R +  A ++A+TGS GKTTT+E++  AL+ +    A   + NN IGV
Sbjct: 91  DTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELIRSALAPLGDVQASDSNNNNDIGV 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL          + E+GM   GEI  L+    P IAVIT I  AH+        IASA
Sbjct: 151 PLTLLGAHRSHAAVVVEMGMRGAGEIERLSCCAEPEIAVITNIGTAHIGRLGSRAAIASA 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----------ADFQ 259
           K EI   L   G + +   D+  E   ++     I  +   G              A   
Sbjct: 211 KCEITAALSPRGVVVIPAGDALLEDALSRCWTGRILRVSLEGDEPEGGPDVSGLTSAALP 270

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   +     +  QG          G H A+N ++ L + S L   +     +L  
Sbjct: 271 APDLVGVFQPEDQSLAFQGLRFRC--PLEGRHNARNFMLALAVASELEVPL----HSLEA 324

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                  G+  R ++  G  +L+DE+YNA+P ++ AA     ++  H  GRR AVLG M 
Sbjct: 325 MDVAMPGGRNKRLSM--GGVSLLDETYNASPEAVLAA----LELLAHQPGRRFAVLGTML 378

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           E+G  S   H  +A+      +  + +   G     ++            +T +   L +
Sbjct: 379 ELGSRSVELHRRVAQRAVDLKLDGLVVVAGGDEGDVMEATACSLSRFTRVQTPEDAALPL 438

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  L  GD V++K+S      RLI +L 
Sbjct: 439 RGWLKPGDTVLLKASRGVALERLIPVLR 466


>gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 432

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/438 (29%), Positives = 202/438 (46%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+++G    +V+    A           V+
Sbjct: 16  VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEAEYAVGDDER--YILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L +LA   R + K  +I +TG+ GKTTTKE+    LS         G+ NNHIGV
Sbjct: 74  DVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  +    + E G SH GEI+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLELTSEHTIAVIETGASHPGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCS 267
           K E+++ L  K GT+F+N+D    + +    H         +G   +    +  +  +C+
Sbjct: 194 KGELYDYLRAKHGTVFINHDSEDLKRIAGGLHQ------ICYGSPCDEVLSVEGEVLECA 247

Query: 268 EQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  +  G    EV    IG +  QN+L    I      +VD   +AL+ + PK  R
Sbjct: 248 PFLKFRWRPAGGEWQEVQTGLIGAYNMQNLLAAATIGRTFGVEVDAVNRALAAYEPKNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    L+ ++YNANP SM+AAI     +      RR+A+LGDM E+G+ S 
Sbjct: 308 SQLTETDDNK----LLVDAYNANPTSMRAAIENFRDMKVE---RRMAILGDMGELGDCSW 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A++L      HVWL G    A +            + ++ +   ++     G  
Sbjct: 361 KAHQAIADLLVESGFEHVWLVGPKFKAARHPFRT------FDNVEQVKKALEIKKPKGYY 414

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S+S   Y L + L
Sbjct: 415 ILIKGSHSTRLYDLPDYL 432


>gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
 gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
          Length = 536

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 146/513 (28%), Positives = 221/513 (43%), Gaps = 59/513 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+    ++   + G              N +  DSR I     F AI G H DGHD++
Sbjct: 27  MMPM-NISEIANTVHGEMHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112
            +A + GA + +V       +   ++    V++ + AL  LA              TII 
Sbjct: 86  KNAEKSGAVVAIV----EHVVEGTNLNQIVVNNSVEALGLLAKHNLELRRNLNKPFTIIG 141

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+ML   LS++ +T A +GS+NN+IG+PLT  ++  +  F I E+G +H+
Sbjct: 142 ITGSVGKTTTKDMLKALLSTLDETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LTH+  P +A++  +  AHL  F  +E IA AK+EI  GL   G   LN DD   
Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDD--- 258

Query: 233 ELLKAKSHALGIKTIYSFGKSKNA---------DFQ--LRKWKQCSEQ-SWMEVQLQGKS 280
           + + A S  +  K +  FG++            D+Q      K  S   +   +  +  S
Sbjct: 259 KRVSAMSCLVENKHVRWFGRNAKNGLLESASKDDYQLSASNIKLDSFGKAVFTITERSNS 318

Query: 281 ------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCA 333
                 +EV     G H   N L    +   L   +D     LS          +    +
Sbjct: 319 SDLVNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVS 378

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSF 388
            N   FTLID+S+NANP SMKA I  L        S   +  RIAVLG M E+G      
Sbjct: 379 KNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDEL 438

Query: 389 HIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH-------------VHYSETMD 431
           H ++ E ++  ++  V   G      +  L   + +                V++  + D
Sbjct: 439 HTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHEAVYFVHSAD 498

Query: 432 GLFLFIQSSL--VDGDVVVVKSSNSCGFYRLIN 462
                +   +      VV++K S++ G   L  
Sbjct: 499 EADDIVWKLVAEHPSSVVLLKGSHASGLSVLAE 531


>gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase
           [Paludibacter propionicigenes WB4]
 gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paludibacter propionicigenes WB4]
          Length = 434

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 207/440 (47%), Gaps = 23/440 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR       FFA+KG ++D + F L A++ G    VV+    A           V+
Sbjct: 13  ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYAIDER----FILVE 68

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL +L +LA   R +    +I ITG+ GKTTTKE++   L          G+ NNHIGV
Sbjct: 69  NVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQGNLNNHIGV 128

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL ++  + +  + E+G +H  EI+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 129 PLTLLQLKPEHEIAVIEMGANHPEEIKALAEIAEPDYGIITNVGMAHLEGFGSFEGVKKT 188

Query: 210 KAEIFEGLEKTGTIF-LNYDDSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E++E + K G    +N ++     +   S   +  + + S+   KN+  +++      
Sbjct: 189 KRELYEYIYKAGKAIFINKNNEHLLKMAVDSGFVVNNENVISYSLDKNSSSRIKAV-VTD 247

Query: 268 EQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              ++E++    +  S ++    IG + A+N+L  + I      + +     L  ++P+ 
Sbjct: 248 CSPFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEYFGLNKEELTAGLEKYNPQN 307

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +      N+    LI ++YNANP SMKAAI   +Q++  G   +  +LGDM E+GE 
Sbjct: 308 NRSQLTITENNK----LIIDTYNANPTSMKAAILNFAQMNVEG---KTLILGDMLELGEQ 360

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S + H  + ++L    ++ V L G +          +      + +  L  +I++  +  
Sbjct: 361 SSAEHQGIIDLLKQNKLADVLLVGNNFR------STNNPYTCFDEVTELINYIKNKPICN 414

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             V++K S      +++ LL
Sbjct: 415 KYVLIKGSRGIKLEKVVPLL 434


>gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 503

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/479 (24%), Positives = 194/479 (40%), Gaps = 28/479 (5%)

Query: 2   NPLWTFHDL-----LQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
            P+ T          +  Q   +G     Q  +  +  D+R++   + F A++G  +D +
Sbjct: 4   TPMLTLQQAHALVQARIPQARLVGGPDALQLPLGRVHTDTRTLQAGDLFVALRGERFDAN 63

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F+  A     G           + +  +P   V D L AL  LA   R R    +I +T
Sbjct: 64  EFLAQARA---GGAAAALAHPGRLEAAGLPGIEVPDTLAALGALAAGWRARLDLPLIGVT 120

Query: 115 GSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M    L + K    +A  G++NN IGVPL L R+    +  + ELGM+H 
Sbjct: 121 GSNGKTTVTQMTAAVLRAWKGDAAFATQGNFNNDIGVPLMLLRLRAAHEAAVIELGMNHP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P +A++      HL     +  +A     +   L   G      DD++ 
Sbjct: 181 GEIAVLAGIAQPTVALVNNAQREHLEFMHTVRAVAEENGSVISALPAGGVAVFPADDAYA 240

Query: 233 ELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            L +  +   G +   +FG      A  +  +    +    + +       +      G 
Sbjct: 241 PLWRGLA---GARRCLAFGMEPGSAAGVRCTRAHWEAGAWNVHIDTPLGGFDGTVRIAGR 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDES 345
           H   N L          A +D   + L+ F P +GR + +  A+ Q        T +D++
Sbjct: 298 HNVANALAATACALAAGAPLDAIARGLAAFEPVKGRSRAFTAAVPQPGGGSRRITAVDDT 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM AAI VL ++     G R+ V+GDM E+G+    FH +         I  ++
Sbjct: 358 YNANPDSMHAAIDVLGELP----GPRLLVMGDMGEVGDQGPQFHAEAGSHARDRGIERLF 413

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             G   +    A        + + M  L   ++ +      V+VK S      +++  L
Sbjct: 414 ALGALGIHAVQAF--GPQARHFDDMASLLAAVREAAPSAGSVLVKGSRFMKMEQVVQAL 470


>gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 509

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 141/513 (27%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+ +   G+   +  P   V G I  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIPL-SIADIAEITGGNLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAE 59

Query: 59  HAVQKGAGLV----------VVNTDMVASIGSLSIPVFGVDD-------VLGALNKLAVA 101
            A+++GA  V          VV        G  +       D       V+ AL+ +A  
Sbjct: 60  KAIEQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIARE 119

Query: 102 ARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
              R        I+ +TGS GKT+TK++L     +   T A  GS+NN +G+P T  R  
Sbjct: 120 VTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCD 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L
Sbjct: 180 EHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELVEAL 239

Query: 218 E---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCS-EQ 269
               + G   LN DD F   +  ++ A     +  +  +K    +A +     +     +
Sbjct: 240 PSAAEGGVAVLNADDPFVAGMAPRTSA----KVVYYSANKPPASDAQYYASDIQLDDVAR 295

Query: 270 SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +   G   + V     G H   N L           D      ALS          
Sbjct: 296 PSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQNASEH-- 353

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQS 387
           R      +   T ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  + +
Sbjct: 354 RMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAVA 413

Query: 388 FHIDLAEVLSLYNISHVWLSG--FHVLALKDALP-RSIHVHYSE-------TMDGLFLFI 437
            H  L EVLS Y++ H+   G   ++ A+ +A   R I+   S         ++ +    
Sbjct: 414 AHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRVA 473

Query: 438 QSSLVD------GDVVVVKSSNSCGFYRLINLL 464
            + + D       DVV++KSSN+   +R+   L
Sbjct: 474 PAGIEDWTGREAKDVVLIKSSNAQRLWRVAEQL 506


>gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 422

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 27/438 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GIS D+R I     FFA+KG +++G+ +   A+ +GA  VV++ +              
Sbjct: 11  TGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEEQFKKDDR----YIL 66

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II++TGS GKTTTKE++   L+   KT A +G+ NNHI
Sbjct: 67  VDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNLNNHI 126

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  D + GI E+G +H+GEI  L ++ +P    IT    AHL  F   E + 
Sbjct: 127 GVPLTLLSMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYITNFGKAHLEGFGSEEGVV 186

Query: 208 SAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+++ L+     +F+N +D        +         ++FG  K +D  +      
Sbjct: 187 IGKSELYKHLKSHDKIVFVNSND------AKQVDLTKGMKTFTFGL-KQSDVWV-----S 234

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +     V++   ++ +  + IG + + N+   + I           ++A+  + P   R
Sbjct: 235 FKNVNPLVEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDKHIVEAVENYVPSNNR 294

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    +   T++ ++YNANP+SMK A+  L  ++      + A+LGDM E+G  ++
Sbjct: 295 SQIIK----KDNLTILLDAYNANPSSMKVALENLQALNDTP---KYAILGDMFELGASAK 347

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H+ +A++ +  ++  V L G +   L    P     +Y+ T + L     S    G  
Sbjct: 348 KEHMSIAKLAASIHLDGVLLVGENFSNLNFDAPG--IAYYTSTKELLENEDFSKYKTG-T 404

Query: 447 VVVKSSNSCGFYRLINLL 464
           ++VK S      ++++ L
Sbjct: 405 LLVKGSRGMALEQILDKL 422


>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 504

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 130/502 (25%), Positives = 204/502 (40%), Gaps = 43/502 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   +++ + G   G   P   V G +  DSR +     F A+ G   DGH++  
Sbjct: 1   MIEL-TLGQIVEIVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVA- 101
            A+ +GA  V+        + S+ +P     D                V+ AL+KLA   
Sbjct: 60  TAIGQGAVAVLAAR--PVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHV 117

Query: 102 ---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
              A      T++A+TGS GKT+TK+ +   LS    T A  GS+NN +G+P T  R   
Sbjct: 118 VDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTT 177

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + + E+    +G I  L  +  P I  +  +  AHL  F     IA AK E+ E L 
Sbjct: 178 HTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGELVEALP 237

Query: 219 K---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCS-EQS 270
                G   LN DD F   +  ++ A     + +F      +  A +     +     ++
Sbjct: 238 AAADGGVAVLNADDPFVAAMAPRTTA----RVVTFSTANPPAPGAQYWAGDLELDDVARA 293

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S  V     G H   N L    +      D  T +  LS          R 
Sbjct: 294 SFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLS--SHAAASAHRM 351

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFH 389
                    T+I++SYNANP SM+A ++ L+   S   +    AVLG M E+G+ +   H
Sbjct: 352 DVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEH 411

Query: 390 IDLAEVLSLYNISHVWLSG--FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             L   L+ Y++  +   G   +  AL++ A    +              ++  + DGDV
Sbjct: 412 RALGAELAKYHVERLIAVGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDV 471

Query: 447 VVVKSSNSCGFYRLINLLLEEF 468
           V+VK+SN+   +R+   L   F
Sbjct: 472 VLVKASNADQLWRVAEELHAMF 493


>gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
          Length = 509

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 141/513 (27%), Positives = 213/513 (41%), Gaps = 56/513 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+ +   G    +  P   V G I  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIPL-SIADIAEITGGSLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAE 59

Query: 59  HAVQKGAGLV----------VVNTDMVASIGSLSIPVFGVDD-------VLGALNKLAVA 101
            A+++GA  V          VV        G  +       D       V+ AL+ +A  
Sbjct: 60  KAIEQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIARE 119

Query: 102 ARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
              R        I+ +TGS GKT+TK++L     +   T A  GS+NN +G+P T  R  
Sbjct: 120 VTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCD 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK E+ E L
Sbjct: 180 EHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELVEAL 239

Query: 218 E---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCS-EQ 269
               + G   LN DD F   +  ++ A     +  +  +K    +A +     +     +
Sbjct: 240 PSAAEGGVAVLNADDPFVAGMAPRTSA----KVVYYSANKPPASDAQYYASDIQLDDVAR 295

Query: 270 SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +   G   + V     G H   N L           D      ALS          
Sbjct: 296 PSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQNASEH-- 353

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQS 387
           R      +   T ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  + +
Sbjct: 354 RMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAVA 413

Query: 388 FHIDLAEVLSLYNISHVWLSG--FHVLALKDALP-RSIHVHYSE-------TMDGLFLFI 437
            H  L EVLS Y++ H+   G   ++ A+ +A   R I+   S         ++ +    
Sbjct: 414 AHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRVA 473

Query: 438 QSSLVD------GDVVVVKSSNSCGFYRLINLL 464
            + + D       DVV++KSSN+   +R+   L
Sbjct: 474 PAGIEDWTGREAKDVVLIKSSNAQRLWRVAEQL 506


>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
 gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
          Length = 465

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 211/469 (44%), Gaps = 18/469 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  +G      V G +  DSR       + A +G   DGH F+  A  +G
Sbjct: 4   SAQWIAVAVSGRLVGN--DVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKT 120
           A  V+V  ++  +     +    V+D   AL  LA A     R      +IA+TGSVGKT
Sbjct: 62  AVAVIVEHEVDEA-----VTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   +S    T A   S+NN +G+PLT+          + E+G S  G I +LT 
Sbjct: 117 TTKDLLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTD 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +A+   +  AH+  F G E +A+AKAE+ +G    G + LN DD   E +   + 
Sbjct: 177 IVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLAT 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              I+  +S   ++ AD  +R  +   ++++   +        V    +G H   N L  
Sbjct: 237 GRVIR--FSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 L   ++T    LS            +   ++    TLID+SYNAN  SM+A I+
Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I    + +RIAVLG+M E+GE SQS H  +  +++   +  +   G       +  
Sbjct: 355 ALASI--GRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGA 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P   H   +               DG VV+VK S     +++ ++L E+
Sbjct: 413 PEVPHREVAADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREK 461


>gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
 gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
          Length = 458

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 198/442 (44%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A+ KG    V++           I    VD
Sbjct: 34  VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEKEYDDEADDRI--ILVD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTTTKE+L+  LS         G++NN +GV
Sbjct: 92  DCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNNDVGV 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    D  + E+G SH+G+I+ L   V P   +IT +  AHL  F   E +  A
Sbjct: 152 PKTLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNVGRAHLQGFGSFEGVMQA 211

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK------ 262
           K E+++ L+     +FLN  +     L   +H   ++ I S+G+   A            
Sbjct: 212 KGELYDYLKACHAPVFLNTSNEH---LVDMAHQRRLERIISYGQDDGAQVWGEVMSCDPF 268

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K     S  E        EV  H +G +   N+L  + +        +   +AL  + P
Sbjct: 269 LKLQWGASHAEHHSPTSMQEVSTHLVGAYNLDNVLAAITVGLHFGVSEEQIRQALESYTP 328

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +    + N+    LI ++YNANP SM AAI    ++S      R+A+LGDM E+G
Sbjct: 329 SNNRSQFVETSRNR----LIIDAYNANPTSMAAAIDNFERMSMTQP--RMAILGDMRELG 382

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E+S+  H  +A+ L   +I  +WL G            S      + ++ +   + +   
Sbjct: 383 EVSEEEHQKIADSLKASDIDTIWLVGGEFA------KTSCKFRKFKDVEEVKAALATEQP 436

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            G  ++VK SN     +L   L
Sbjct: 437 SGYCILVKGSNGMHLSQLTTEL 458


>gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 432

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 207/438 (47%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+++G    +V+    A+ G        V+
Sbjct: 16  VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGGDER--YILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R + K  +I +TG+ GKTTTKE+    LS         G+ NNHIGV
Sbjct: 74  DVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  D    + E G +HLGEI+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLELSPDHTIAVIETGANHLGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCS 267
           K E+++ L  K GT+F+++D    + +    H         +G   +    +  +  +C+
Sbjct: 194 KGELYDYLRAKHGTVFIDHDSEDLKRIAGGVHQ------ICYGSPCDEVLSVEGEVLECA 247

Query: 268 EQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  +  G    EV    IG +  QNML    I      +VD+  +AL+ + PK  R
Sbjct: 248 PFLKFRWRPAGGEWQEVQTGLIGAYNMQNMLAAATIGRTFGVEVDSINRALAAYEPKNNR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N+    L+ ++YNANP SM+AAI     +      RR+ +LGDM E+GE S 
Sbjct: 308 SQLMETDDNK----LLVDAYNANPTSMRAAIENFRDMKVE---RRMVILGDMGELGESSW 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A++L      HVWL G    A +            ++++ +   ++     G  
Sbjct: 361 KAHQAIADLLVESGFEHVWLVGPKFKAARHPFRT------FDSVEQVKKALEIKKPKGYY 414

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S+S   Y L + L
Sbjct: 415 ILIKGSHSTRLYDLPDFL 432


>gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 433

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 199/439 (45%), Gaps = 25/439 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+Q+G    VV+                VD
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDEAEFCPPNDER--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A   LA   R      I+ ITG+ GKTTTKE+L   L         +G++NN IGV
Sbjct: 74  DVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQKYNVLYTLGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  LV P +A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193

Query: 210 KAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E+++ +   K G +F++ ++     +           + ++G     D  +  K    
Sbjct: 194 KGELYDFMRQSKRGKVFIDANNPHLMGIAE------GLDLVTYGTPARPDLFVSGKVVSA 247

Query: 267 SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +       Q +G +  EV  H +G +   NML  L +   L    + A +AL+ + P   
Sbjct: 248 APFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAEDANRALANYVPSNN 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +    A N+    LI ++YNANP SM  A++    +       ++A+LGDM E+G +S
Sbjct: 308 RSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVPH---KMAILGDMLELGAVS 360

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           QS H  + + LS   +  VWL G            S        ++ +   ++    +  
Sbjct: 361 QSAHQAIVDQLSQLALDEVWLVGSEFA------RTSCAFRKFNNVEEVIAELKKHRPENH 414

Query: 446 VVVVKSSNSCGFYRLINLL 464
            ++VK SN     +L   L
Sbjct: 415 YILVKGSNGIHLDKLPQWL 433


>gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes sp. HGB5]
          Length = 414

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 130/437 (29%), Positives = 194/437 (44%), Gaps = 38/437 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA+ G  +DG+ F   A+ KGA  VVV+     S          V 
Sbjct: 14  ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVDDPAAVSGDRT----VLVG 69

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R      I+AI+GS GKTTTKE+++  L+   + YA  G+ NNHIGV
Sbjct: 70  DTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNNHIGV 129

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M  D +FG+ E+G S  GEI  L  +  P+  ++T I  AHL  F G E I   
Sbjct: 130 PLTLLAMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNIGRAHLEGFGGPEGIRRG 189

Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+ + L    G  F+  +D     + A+   L  +                       
Sbjct: 190 KGELLDYLAANGGRAFVPREDQTLTNMAAERDGLAAE----------------------- 226

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V L      + HH  G +   N+   + +      D +    A+  + P   R +
Sbjct: 227 --YYSVTLADG---IAHHLEGDYNRFNIAAAVAVGRYFDIDGERIRHAVGSYMPDNNRSQ 281

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     N    TLI + YNANP+SM+A++         G  RR+ +LGDM E+G  S+  
Sbjct: 282 RTETERN----TLIVDCYNANPSSMRASVLNFLAEPAGGRSRRVLILGDMLELGAWSEQE 337

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H D+  + +    + + L G         + P+  +     + + L   ++   V+   V
Sbjct: 338 HRDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSREELIAELRRRPVENAFV 397

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK S   G  + +  L
Sbjct: 398 LVKGSRGIGLGKALEEL 414


>gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 460

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 128/439 (29%), Positives = 208/439 (47%), Gaps = 17/439 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G++ DSR+      F A+KG  +DG+DF L A+ KG    VV+      +         
Sbjct: 35  SGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDRA---ELAQKEARCLY 91

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   AL +LA   R +    II ITG+ GKTTTKE+++  L S     A +G+ NN I
Sbjct: 92  VEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNLNNQI 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     ++ +G+ E+G SH+G+I  LT +  P   +IT I  AHL  F   E + 
Sbjct: 152 GVPLTLLSFTPEMQYGVVEMGASHIGDIAELTAIAEPDFGLITNIGRAHLEGFGSFEGVT 211

Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            AK E+++ L +  G  ++N DD     L  +  A  ++T  ++G S+ A F+       
Sbjct: 212 KAKCELYDWLGQHNGEAWVNADDP----LLMQHSAPLVRT--TYGTSREAFFRASLLDHP 265

Query: 267 SEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                      Q ++  V    +G +   N L  + +   L       + AL  + P   
Sbjct: 266 LGYFLAFAFYWQRETYRVHTQLVGKYNLPNALAAVAVGLRLGVAPPDIVMALEHYSPSNS 325

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      +     L+ ++YNANP+SM  AI      S      +  +LGDM E+G  S
Sbjct: 326 RSQYIANTPHHNN--LVVDAYNANPSSMYTAIENFLSTSGAQA--KYLILGDMFELGSAS 381

Query: 386 QSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +  H+ L + L+        +L G    AL ++  ++ H+HY  + + L   ++ + ++ 
Sbjct: 382 REEHLALVQRLARETTDITCYLVGKEFAAL-ESEAKAPHLHYFPSTEILAEQLRLAPIEH 440

Query: 445 DVVVVKSSNSCGFYRLINL 463
             ++VK+S    F  L+ L
Sbjct: 441 AFILVKASRGMHFESLVEL 459


>gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
 gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
          Length = 475

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 191/471 (40%), Gaps = 23/471 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MMTLAKALELIQTHIPQARLVGNGQLELARVHTDTRTLQDGDLFVALKGERFDAHDFLSQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       + +  +    V D L AL  LA A R +    +IA+TGS GK
Sbjct: 61  AQ----AAGAVAAVASHGLETAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116

Query: 120 TTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           TT  +M+   L +      +   A  G++NN IG+PL L RM       + E+GM+H GE
Sbjct: 117 TTVTQMIASVLRAHVGAQGEAALATRGNFNNSIGMPLNLLRMTGAHRIAVLEMGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L + G       D++  L
Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLGFLPRDGVAIFPAGDTYTPL 236

Query: 235 LKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               +     ++   FG++   A                 +        V  H  G H  
Sbjct: 237 WTELAAG---RSCLMFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIAGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            +    K LS F P  GR +     +N    T++D+SYNANP S+
Sbjct: 294 RNALAAAACAHAAGVSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNANPDSV 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI+VL+++        + VLGDM E+G+    FH +   +     I+ V+  G     
Sbjct: 354 AAAIAVLAELPAPQ----LLVLGDMGEVGDNGPQFHAEAGALARQSGIAQVFALGEQSAF 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              A        + E+M  L   + + L     V+VK S      +++  +
Sbjct: 410 AASAFGSGAR--HFESMAALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSI 458


>gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 465

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 132/453 (29%), Positives = 213/453 (47%), Gaps = 25/453 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  I  DSR ++    F  + G H++GH F+  A++  A   VV       +    +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEAQAAVVARKDHHPVPE-GL 84

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P + V+D L A  +L +  R +    ++A+TGS GKTTT+E++  AL+ + +  A  G+ 
Sbjct: 85  PHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLASAGNN 144

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL +   D    + E+GM  +GEI  L+   +P +AVIT I  AH+      
Sbjct: 145 NNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSR 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIKTIYSFGKSKNADF 258
             IASAK EI   L+  G I +   DS  E     + + +   + ++        + AD 
Sbjct: 205 AAIASAKCEITTCLKPRGVIVIPAGDSLLEDALERIWRGRVIRVAVQDNQQLEPPEIADL 264

Query: 259 QLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             R         C + +  E+ L+GK+        G H A N+++ L +   L    D  
Sbjct: 265 HRRPLPKADLVGCVDLAKGELLLEGKAYT--LPLEGMHNACNLMLALAVAREL----DVC 318

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            ++LS        G+  R  +  G FT++DE+YNA+P +++AA+ +L+       GR  A
Sbjct: 319 NESLSNLKVDVPGGRSRRLKV--GNFTVLDETYNASPEAVQAALELLA----IQPGRHFA 372

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMD 431
           VLG M E+G+ S + H  +AE      +  + +      A   A       H+      +
Sbjct: 373 VLGTMLELGDQSVALHRQVAERAVQIGLDGLVVVAAGAEAEAMATAAESLPHLAVVANPE 432

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +Q+ L  GDVV++K+S      +LI LL
Sbjct: 433 QAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465


>gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 515

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 144/493 (29%), Positives = 217/493 (44%), Gaps = 38/493 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T   +     G     V       V  I  DSR + P   + A  G H DGH FI
Sbjct: 1   MIEL-TAPRIAALTSGRLSRTVADELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113
             A++ GA L++   ++  + G    P   V D + A+  +A       R   + T++ I
Sbjct: 60  EAAIEAGAILIIAEREIADAQGQPF-PAIIVADAVQAMGDIAAEVVQLIRANGEVTVLGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L   L  +  T A IGSYN  +GVPLT+ +  +   F + E+G + +G
Sbjct: 119 TGSAGKTTTKDLLAGILRQLGPTVAPIGSYNGEVGVPLTVFQADLTTRFLVIEMGATRIG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L  LV+P I V+  I  AH   F G+E IA AK E+ E L  TGT  LN  D    
Sbjct: 179 HIEYLAGLVKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALSPTGTAVLNLGDGRVS 238

Query: 234 LLKAKSHALGIKTIYSFGK------SKNADFQLRKWKQCSEQS-WMEVQLQ-GKSMEVVH 285
            + +++ A     +  FG+                 +  S  +   +++   G S  +  
Sbjct: 239 AMASRTVA----PVLWFGEEGLRIPEGQTSVLAGNVQVGSNATPSFDLRFPDGSSWPIRS 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H   N+L          AD +T  + L    PK     R   +      T+I+++
Sbjct: 295 GLIGIHHVNNLLAAAAAAWAAGADGETIARGLDGQGPKSRW--RMERSERADGVTVINDA 352

Query: 346 YNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           YNANP SM+AA+ VL+++             + R  AVLG M ++G  S   H  L +V+
Sbjct: 353 YNANPDSMRAALRVLAELGRGGADENGKILPQRRTWAVLGPMFQLGAESIREHNALGQVV 412

Query: 397 SLYNISHVWLSGFHVLALK-----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              NIS + + G    AL      +       VH    +D  +  +Q  L  GD+V+ KS
Sbjct: 413 VRLNISRLLVIGAEARALHIGAINEGSWGEESVH-VPDLDSAYALLQEELKPGDIVLFKS 471

Query: 452 SNSCGFYRLINLL 464
            +      L + +
Sbjct: 472 GHDAELRLLGDRI 484


>gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
 gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
          Length = 433

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/442 (28%), Positives = 205/442 (46%), Gaps = 31/442 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A++ G+   VV+    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTGDAH--YIIVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    II ITG+ GKTTTKE+++  LS         G+ NN IGV
Sbjct: 74  NCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLNNSIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           K E+++ L   ++  TIF++YD+ +   +     A G+  I ++G  +      R     
Sbjct: 194 KGELYDYLRRRKEGSTIFIHYDNPYLREI-----AYGLNQI-TYGSEEELYVSGR---VT 244

Query: 267 SEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++  +     +GK+ +V    IG +   N L  + I      +     KAL+ + P
Sbjct: 245 GNSPYLTFEWKAGKEGKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKIDKALAEYTP 304

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +  R +  R A N    TLI ++YNANP SM A+IS   ++       ++ +LGDM E+G
Sbjct: 305 QNNRSQLKRTADN----TLIIDAYNANPTSMMASISNFCKMEAAH---KMLILGDMRELG 357

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + S   H  + + L   +  HV L G    A + + P                 +Q +  
Sbjct: 358 KDSAEEHQKIIDYLEECHFEHVMLVGELFAATRHSYPAYADAAAV------IAELQKNKP 411

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
              ++++K SN      +I  L
Sbjct: 412 TERMILIKGSNGIKLSSVIEYL 433


>gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 432

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 192/443 (43%), Gaps = 30/443 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIIDEGEYAVEGDQR--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  + +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VDNCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L K    TIF+++D+ +   +  +           +G            + 
Sbjct: 192 KTKGELYDFLRKKENSTIFIHHDNPYLMNMSEELDR------IYYGTQDGLYI---NGRI 242

Query: 266 CSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                ++  + +  +   +H      IG +   N L  + I      ++    +AL+ + 
Sbjct: 243 TDNSPYLAFEWKAGNGNEIHRIQTQLIGEYNFPNALAAITIGHFFGVEMQKIDEALAGYT 302

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +  +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+
Sbjct: 303 PQNNRSQLKQTTDN----TLIIDAYNANPTSMMAALQNFRNMAVPH---KMLLLGDMREL 355

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S   H  +   +   N   VWL G    A +              +  +   +++  
Sbjct: 356 GAESNIEHQKIVNYIKDSNFEQVWLVGEQFAATQHNFKT------YANVQEVIKELETQK 409

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN       +  L
Sbjct: 410 PKGYTILIKGSNGIKLSSTVEHL 432


>gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 466

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 200/458 (43%), Gaps = 28/458 (6%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +  DSR+I     F  + G  +DGH F+    +KG     ++ D   +I    +
Sbjct: 24  DAPLGTVCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFISKDCNLAIPEELL 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             + VDD   A  KLA   R      ++A+TGS GKTTT+E++  +L  + +  A   + 
Sbjct: 84  -YWQVDDTQEAYQKLAFLHRRLFSIPVVAVTGSAGKTTTRELIHSSLVPLGEVLATSNNN 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP TL +  V+    + E+ M  LG+I  L+    P IAVIT I  +H+      
Sbjct: 143 NNDIGVPFTLLKANVNHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSK 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + IASAK EI   +   G + +   D   E    +     I  +    +SK+  F   ++
Sbjct: 203 QNIASAKCEIAAHMNPNGFVIIPAGDQLLEKTLQEVWKGRIVRV--DIESKSNPFFANEY 260

Query: 264 KQCSEQSWME-----------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                +  ++           +   G   ++     G H A N +  L +   L   +D+
Sbjct: 261 DSHQTKKNVDYLGVLDSDNWQITYDGIIFQM--PLQGRHNAINFMFALAVAYELNVPLDS 318

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                    P       +      G   ++DE+YNA+P S+ A++ +L+       GR  
Sbjct: 319 IRNLSVNLPPGRNHSLTF------GNINVLDETYNASPESVIASLDLLAT----KPGRHF 368

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETM 430
           AVLG+M E+GE +  +H  + +      ++ + +   G    A+  A     ++    T 
Sbjct: 369 AVLGNMYELGEKTIDYHEQIVQHSIATGLTGLVICVNGPEAEAMLLAGQPLSYIEVVSTP 428

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +  FL ++S L  GD +++K+S      R++ LL E +
Sbjct: 429 EDAFLILKSWLNSGDYLLLKASRKVSLERILPLLKEAY 466


>gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
 gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
          Length = 485

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 211/476 (44%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  DLL+   G +   V     +  ++ DSR + P   + A  G   DGH FI  
Sbjct: 1   MIEL-SLTDLLEITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAITG 115
           A   GA L +              P   V+D + A+ K+A       + ++ A ++ ITG
Sbjct: 60  ARAAGAVLSLAERITHDEERREH-PAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVVGITG 118

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++L   LS    T + IGSYN  +GVPLT+     +  + + E+G + +G +
Sbjct: 119 SAGKTTTKDLLAGILSQAAPTVSPIGSYNGEVGVPLTVFSATEETKYFVIEMGATGIGHL 178

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT +V PH+ V+  +  AH   F G+E I  AK E+ E L+  G   LN +D     +
Sbjct: 179 NYLTDMVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEALDTEGIAILNAEDPRVARM 238

Query: 236 KAKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQS-WMEVQLQ-GKSMEVVHHGIG 289
           ++++ +     +  FG      +NA          +E    + ++   G S  +    +G
Sbjct: 239 ESRARS----QVRFFGTGAVKPENAGVWASDVVVNAEGQPELTLEFPNGYSKRITSGLLG 294

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N+L        L  D +    A  +     G   R          ++I+++YNAN
Sbjct: 295 RHHVSNILAAANAALALDIDPELI--AAGLEGRAAGSRWRMERLERADGVSIINDAYNAN 352

Query: 350 PASMKAAISVLSQISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           P SM+AA+  L+++    +G    R  AVLG+M E+G+ S   H  L  +    NI  + 
Sbjct: 353 PESMRAALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLGRMAVRMNIKKLV 412

Query: 406 LSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           + G       ++           +Y E ++     ++  L  GD+ + KSSN  G 
Sbjct: 413 VVGRGAKPAYNSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGDIALFKSSNGAGL 468


>gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
          Length = 430

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 205/440 (46%), Gaps = 28/440 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ D+R   P   FFA++G  ++G+ F   A+  G  L VV+   V     L      V
Sbjct: 15  QITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCALAVVDDPSVVDDDRL----ILV 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L  LA   R +    +I ITG+ GKTTTKE+++  LS         G++NNHIG
Sbjct: 71  DDVLTTLQALAAFHRHQFTGPVIQITGTNGKTTTKELVSAVLSERYNVLFTQGNFNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+       + E G +H GEI+ L+ +V P   +IT +  AHL+ F   E +  
Sbjct: 131 VPKTLLRLNASHQIAVIETGANHPGEIKLLSEIVDPDCGLITNVGKAHLAGFGSFEGVIR 190

Query: 209 AKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQ 265
            K E+++ L  +    +F+N D+ + + +             ++G+    D+ +  +   
Sbjct: 191 TKGELYDYLRTKSDAFVFINADNPYLQPIAHDLLR------ITYGRPGK-DYDVEGEVLT 243

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           C     +  +++G +  EV    IG +   N+L  + +        +   +A++ + P  
Sbjct: 244 CDPCLNLRFRIKGGAWQEVKTQLIGAYNIDNILAAVAVGVRFGVTPEQISRAIAAYCPTN 303

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  R A N    TLI ++YNANP SM AA+     I       ++A+LG M E+G  
Sbjct: 304 NRSELLRTATN----TLIVDAYNANPTSMAAALDNFQLIK---HPHKMAILGGMRELGNA 356

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S   H  + + ++   +  +WL G       +         Y  +++ +   ++   +  
Sbjct: 357 SAQEHQAIIDKVATMALDDIWLVGEEFQPFAE------RYRYFPSVEAVEQQLREHPLHD 410

Query: 445 DVVVVKSSNSCGFYRLINLL 464
            ++++K SNS   YRL + L
Sbjct: 411 SLILIKGSNSQHLYRLPDYL 430


>gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
 gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 117/477 (24%), Positives = 199/477 (41%), Gaps = 31/477 (6%)

Query: 4   LWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L    +LL +     +         + + +DSR++     F  ++G + DGH +I  A++
Sbjct: 14  LMNLDELLTSTGAWLVYESNSSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALK 73

Query: 63  KGAGLVVVNTDMVAS--------IGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113
            GA   VV+ D +            +       V + L AL   A     +      I I
Sbjct: 74  NGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNLYKIGI 133

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L    S    T +  G+ N+  G+PL++  +  + + GIFELGM+  G
Sbjct: 134 TGSSGKTTTKEILASIYSKKYNTVSTKGNLNSETGLPLSVFEVRPEHEAGIFELGMNRKG 193

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  ++ P+ A+IT I  AH+      + IA  K EIF   +     F+  +  F +
Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDSLGFIP-ECEFTD 252

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK   H     ++++   + ++  Q  +              +G+ +  +    G +  
Sbjct: 253 FLKDIPHG----SVFTVSDNDSSLVQKVEDAGVLGSKIF---YKGEEI--LFPLPGVYNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L+ + +              L    P  GR +        GF T   + YNANP SM
Sbjct: 304 KNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVLH-----GFVTYFLDCYNANPDSM 358

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K+AI     I+      +  VL  M E+G  S   H  + E     N  +++  G  + +
Sbjct: 359 KSAIEFCDSINTECA--KHYVLASMLELGAESDYEHKKIIEDALKSNADNLYFFGDDICS 416

Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +     + I+   +   D L   ++ +L   D V++K S S    RL ++L E
Sbjct: 417 AFEGMNVSSSKKIYKFKTNQFDALKEQLKENLSKDDFVLLKGSRSMELERLESVLKE 473


>gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Riemerella anatipestifer RA-YM]
 gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 424

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 203/439 (46%), Gaps = 29/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +SIDSR+IA  + FFA  G +++       A+ KGA  V+V      +I      +F 
Sbjct: 14  NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQKEYENISKN---IFY 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L +L++  R +    IIA+TGS GKTT+KE++   LS   K     G+ NNHI
Sbjct: 71  VPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  + +  + E+G +H  EI  L  + +P    +T    AHL  F G+E + 
Sbjct: 131 GVPLTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPDYGYVTNFGKAHLEGFGGVEGVI 190

Query: 208 SAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+++ L+K    I +N +D+                I  FG  + +D+    ++  
Sbjct: 191 KGKSELYDYLKKENKQILVNANDTI-----QVEKTKDYSKIICFGTLQ-SDY---DFQLF 241

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +   + +  +G+  E++    G +   N+   + +      D +   +A+  + P   R
Sbjct: 242 YDNQRVGLIFEGE--EMISQLTGAYNFTNISAAVTLGLHFGIDKNLIKEAIQEYTPTNMR 299

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    +G  TL+ ++YNANP+SM  ++   +       G +  ++GDM E+G+ S+
Sbjct: 300 SQIMQ----KGDKTLVLDTYNANPSSMAVSLENFALF----NGCKTVIIGDMLELGDASK 351

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  + +     N   +   G H  ++      +           L +++++  +    
Sbjct: 352 EEHKTILQKAQSLNFDKIITVGKHFSSV------NTQGTAFLNTQQLSVYLKNQPLTTKN 405

Query: 447 VVVKSSNSCGFYRLINLLL 465
           +++K S      +L++ ++
Sbjct: 406 ILLKGSRGIALEKLLDDIV 424


>gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 465

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 211/453 (46%), Gaps = 25/453 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  I  DSR ++    F  + G H++GH F+  A++      VV       +    +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEVQAAVVARKDHHPVPE-GL 84

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P + V+D L A  +L +  R +    ++A+TGS GKTTT+E++  AL+ + +  A  G+ 
Sbjct: 85  PHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLASAGNN 144

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +GVPLTL +   D    + E+GM  +GEI  L+   +P +AVIT I  AH+      
Sbjct: 145 NNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSR 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNY-----DDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
             IASAK EI   L+  G I +       +D+   + + +   + ++        + AD 
Sbjct: 205 AAIASAKCEITTCLKPRGVIVIPAGDLLLEDALERIWRGRVIRVAVQDNQQLEPPEIADL 264

Query: 259 QLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             R         C + +  E+ L+G +        G H A N+++ L +   L    D  
Sbjct: 265 HRRPLPKADLVGCVDLAKGELLLEGNAYT--LPLEGMHNACNLMLALAVAREL----DVC 318

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            ++LS        G+  R  +  G FT++DE+YNA+P +++AA+ +L+       GR  A
Sbjct: 319 KESLSNLKVDVPGGRSRRLKV--GNFTVLDETYNASPEAVQAALELLA----IQPGRHFA 372

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMD 431
           VLG M E+G+ S + H  +AE      +  + +      A   A       H+      +
Sbjct: 373 VLGTMLELGDQSVALHRQVAERAVQVGLDGLVVVAAGAEAEAMATAAGSLPHLAVVANPE 432

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +Q+ L  GDVV++K+S      +LI LL
Sbjct: 433 QAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465


>gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL S4-378]
          Length = 394

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 185/392 (47%), Gaps = 13/392 (3%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                  PV  V++ L AL +LA     + K  +IAITGS GKTTTK+++   + +  K 
Sbjct: 11  PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKV 70

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH
Sbjct: 71  HYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAH 130

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +      EEIA AK EI  GL  +G +   ++++         +  G     +FGKS  A
Sbjct: 131 IEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGDFRQLTFGKSDAA 185

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    + +  +E +      +   +E+    IG H   N +  +     +  + +    A
Sbjct: 186 EIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSA 244

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L      +    R      +    +++++YN++P ++K  +     +   G+  +  VL 
Sbjct: 245 LKNMERSKS---RLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKP-KYLVLA 300

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRSIHVHYSETMDGL 433
           DM E+G+LS   H + AEVL    I  ++L G  + A   + +A      V + +T + L
Sbjct: 301 DMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFDTKESL 360

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + S +   + ++VK S   G   ++  L+
Sbjct: 361 ETALLSEINGNEWILVKGSYGMGLKDVVENLI 392


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 201/461 (43%), Gaps = 11/461 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  +++  +    IG   Q  ++ I  DSRS+    +  FFA+K    DGH +I     +
Sbjct: 4   SIEEIVSVVGATRIGER-QASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV            +    V +VL AL +LA   R + +  +I ITGS GKT  K
Sbjct: 63  GVYNFVVAEVPEEMKNCTDVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSNGKTVVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  K+      SYN+ IGVPL++  M    + GIFE G+S +GE+  L  ++R
Sbjct: 123 EWLYQLLSPDKRIIRSPRSYNSQIGVPLSVWMMDEHTELGIFEAGISEMGEMETLEPIIR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NFS +++    K  +F   ++   I  N D+       +KS    
Sbjct: 183 PTIGVLTNIGGAHQENFSSLQDKCMEKLLLF---KECDVIVYNGDNELIRDCVSKSLFTA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       + K ++ +  + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSM-KDPERPLFIEKIEKDAAGTTIKYRYLGFFKEFRIPYIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + ++   P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVPTEVIAERMAHLEPVA---MRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     RR  +L D+ E G+  +  +  +AE++    +  +   G  + A          
Sbjct: 356 SEDKARRRTLILSDILETGQPGKLLYRQVAELVHSRGVDRLIGVGEEISASSSRFDVKEK 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  T + +   +  +L   D+V++K + +  F  + + L
Sbjct: 416 QFFLTTEELMASGVLETLR-NDIVLIKGARAFHFDAVSDFL 455


>gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
 gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
          Length = 525

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 131/525 (24%), Positives = 212/525 (40%), Gaps = 72/525 (13%)

Query: 5   WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            T  +  QA+ G  +        I  Q  V+    DSR + P   F AIKG   DGH ++
Sbjct: 4   MTLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDGHAYL 63

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN---------KLAVAARLRSKA 108
             A         V   +   +   S+P   V+D + AL          + ++A + R+  
Sbjct: 64  EQAA----AAGAVAAVVDHEVAGASLPQILVEDTVRALGFLARHNIEKRRSLAGQARTPF 119

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TI+ ITGSVGKTTTK+++   LS +  T A  GS+NN IG+PLT  ++  +  F + E+G
Sbjct: 120 TIVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLVAEMG 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S +GEI +LT + RP +AV   +  AHL  F  +E I  AK+E+   L  +G   LN +
Sbjct: 180 ASAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKSELVRALPPSGLAILNEN 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKN-----------------------ADFQLRKWKQ 265
           D    L+   +   G++ +  FG  ++                       A+    + + 
Sbjct: 240 DENIRLMPEMT---GVRNLLWFGLHEDRPDEDRSDESETAYPSVPSAMSAAEIYGDQVQV 296

Query: 266 CS-EQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              ++    V     +   +     G H   N L  + +   +    +     L+    +
Sbjct: 297 DDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYAMDLPTEAIAGILAHQGAQ 356

Query: 324 EGRGKRYRCALNQGF----FTLIDESYNANPASMKAAISVLSQISPHGEGR-----RIAV 374
                  R    +      FTLID+S+NANP SMKA +  L+        R     R+AV
Sbjct: 357 SPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAWHAESRTRDERPYRVAV 416

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------------PRSI 422
           LG M E+G   +  H  +           V   G       D L              + 
Sbjct: 417 LGSMLELGPNEKELHQRMGAYALSV-ADMVIAVGSEEEPHLDELAHDFVLGADHDQKEAG 475

Query: 423 HVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLL 465
            +H+  + +     ++    +    VV++K S++ G   L +  L
Sbjct: 476 SIHWVHSAEQAADLVRGLEGEHRQTVVLLKGSHASGLQGLADYWL 520


>gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
          Length = 468

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 116/469 (24%), Positives = 196/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +      L++PV    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 I  F    +A+ Q+            + +     +M V    +G H A+N L  
Sbjct: 239 G---NPILDFALH-DAERQVEAQVTGRLHGGELAIDTPAGAMTVRLRALGEHNARNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358
                    ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI 
Sbjct: 295 AAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAID 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        A 
Sbjct: 355 VLAAQPAP----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAY 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   H+ +    +   + +       V+VK S      R+++ L  +
Sbjct: 411 GDTAR-HFGDVGALVTALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
          Length = 476

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 212/473 (44%), Gaps = 34/473 (7%)

Query: 16  GHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G      P   V G +  DSR + P   F A+ G H DGHDF          +      +
Sbjct: 15  GTLSATDPGHVVTGPVVTDSREVEPGGLFVALPGEHVDGHDFAAG------AVAAGAALV 68

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----------ATIIAITGSVGKTTTKE 124
           +A+     +P   V DV  AL  LA A   R +            +I +TGSVGKTTTK+
Sbjct: 69  LAARALPGLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKD 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L     +   T A + S+NN IG+PLT+ R      F + E+G S  G + +LT +  P
Sbjct: 129 VLAQLCGAAGPTVAPVRSFNNEIGLPLTVLRADEQTRFLVLEMGASGPGHLTYLTDIAPP 188

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +AV+  +  AHL  F  GI+ +A AK+EI  GL   G   LN DD     +   +    
Sbjct: 189 DVAVVLVVGQAHLGGFGGGIDAVARAKSEIVAGLLPDGVAVLNGDDPRVRAMADVAPGRA 248

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKS---MEVVHHGIGYHMAQNMLM 298
           +     FG + +A+ ++   +  +    ++  V + G+     +V    +G H   N L 
Sbjct: 249 VL----FGAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHHVHNALA 304

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   +D     L+          R          T++D+SYNANP SM+AA+ 
Sbjct: 305 AAAASLQVGLTLDEVAAGLTAADALSPH--RMHVVDRADGVTVVDDSYNANPDSMRAALK 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ I+   E R +AVLG+M E+G+  ++ H  +  ++   NI    + G    A++D  
Sbjct: 363 ALAVIAGR-ERRSVAVLGEMLELGDEHRTAHDAIGRLVVRLNIGLTVVVGEGARAIRDGA 421

Query: 419 PR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                    V   + +D    F+   L  GDVV+VKSS   G +RL + L+E 
Sbjct: 422 NHEGSWGDEVVLVDDVDTAAAFLAQELRAGDVVLVKSSYGAGLWRLGDELVER 474


>gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 428

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 127/462 (27%), Positives = 212/462 (45%), Gaps = 35/462 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L  AI+GH            I+ DSR I   + F A+KG ++DG+ +   A+++
Sbjct: 1   MTTIEKLYPAIRGHR-----------ITTDSRQIIRGDIFIALKGENFDGNRYAAAALEQ 49

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L +++     S G        V D L  L +LA   R +    I+ ITG+ GKTTTK
Sbjct: 50  GAALAIIDNADYLSPGCE-----LVADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTTK 104

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    LS   KT+A  G++NNHIGVPLTL  M    +FGI E+G +H GEI+ L  +  
Sbjct: 105 ELCHAVLSKKFKTFATQGNFNNHIGVPLTLLSMDETTEFGIVEMGANHPGEIKTLCEIAD 164

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHAL 242
           P   +IT I  AHL  F   E I + K  +++  L K G +F+N  D     L       
Sbjct: 165 PDFGIITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQL------S 218

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                Y++G  +  D    + KQ        ++ +   + V  H +G +   N +    I
Sbjct: 219 RDHKRYTYG--QEGDLLKGEIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASAI 276

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D      A+  + P   R +  R     G  T+I ++YNANP+SM+A++    +
Sbjct: 277 GMHFGIDPLDIQTAIENYRPSNLRSQLIRS----GRNTIILDAYNANPSSMRASVGNFCE 332

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +       ++ +LG+M E+G  + + H ++  +    N   ++L G +     D   +  
Sbjct: 333 MPGEH---KVVILGEMLELGTENAAAHEEIVRLTQQGNFDRIFLIGNNFEHCAD---KCN 386

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + + +  +    +++S  ++   + +K S      R++  L
Sbjct: 387 FITWFKDTESFMEYLKSHPLNDSFIFIKGSRGNKLERIVEYL 428


>gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
 gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
          Length = 417

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 204/439 (46%), Gaps = 34/439 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+  D+R I   + F+A+ G ++DG++++  A+ KGA   V +     +  S+++    
Sbjct: 12  KGVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVTV---- 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L  LA   R      II++TGS GKTTTKE++   L         +G+ NNHI
Sbjct: 68  VEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQQFNVKGTLGNLNNHI 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+       + G+ E+G +HL EI  L+ +  P   +IT    AHL  F   + I 
Sbjct: 128 GVPLTILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGLITNYGKAHLEGFGSEKNII 187

Query: 208 SAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E+FE L+  G T  + + D   E LK    + GI+   +              K  
Sbjct: 188 IGKSELFEHLKAHGKTAIVGHWDQ--EQLK---RSQGIERFITS----------TDSKLI 232

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             + ++ ++ +G+  +     IG +   NML+   +  I      + +  LS + P   R
Sbjct: 233 KAEPYISLEFEGQKSD--TQLIGEYNYHNMLLAAAVGQIFNMSTTSILNGLSQYTPNNNR 290

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +         +I ++YNANP+SM  A+S LS+        +IAVLGDM E+G+ S+
Sbjct: 291 SQIIQS----DNVKIILDAYNANPSSMSVALSNLSKQKESH---KIAVLGDMFELGKYSK 343

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + ++     +   +L G     +     ++ H      ++      + +  +  V
Sbjct: 344 TEHQKIVDLTKQLGLDQTYLIGESFSQV-----QTSHALLFNNLESFKKTFKINRNEDAV 398

Query: 447 VVVKSSNSCGFYRLINLLL 465
           +++K S      R+++L  
Sbjct: 399 LLIKGSRGMALERILDLFQ 417


>gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. ND132]
 gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 196/471 (41%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ + +   +     +  V  +  DSR++ P + FF I G ++DGH+F   A
Sbjct: 1   MN--LTLAEVARCLGTLADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  VV +      IG +  PV  V D   AL +LA   R    A ++A+TG+ GKT
Sbjct: 59  AAKGACAVVASRM----IGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML    S    T     ++NN IG+P ++ +   D +  I ELG+S  G++  L  
Sbjct: 115 TVKEMLFAVASQKFATAKNYRNFNNQIGLPTSMLKASADQELWIMELGISRRGDMEELAP 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A+IT + P HL        +ASAK  +   L + G   ++ D        A   
Sbjct: 175 VASPDLAIITNVGPGHLEGLGNEAGVASAKTALLRYLRQGGRAVISRDYPLL--WNAALE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +     +S      +DF         +      ++      E+     G H A+N+   
Sbjct: 233 LVDAPVGFSGRDDAESDFSAAFLGALPDGRGRFRLRTPDGDGELTAPFCGRHYAENLACV 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L    D  +  +        R  R       G  T+ID++YNANP SM  A+  
Sbjct: 293 AAAAHCLGLTRDDVVGGVQAMAADPQRFCR----KIGGGITVIDDTYNANPLSMANALRT 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             +++       + VLGDM E+G  +   H +L  V+     + V+  G H L ++    
Sbjct: 349 ARELAGERP--LVLVLGDMRELGAEAVLRHEELGRVIRETAPAMVFYKGDHFLDVERGF- 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +  +  +D      +   +    V+VK S S G     N L  E  A
Sbjct: 406 -GGFMRRAGDVDEFLEAWRELCISEGAVLVKGSRSLGMELYANALCREVNA 455


>gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 472

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 130/480 (27%), Positives = 215/480 (44%), Gaps = 23/480 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ T   ++      + G  P       ++ ++ D+R+++  E F AIKG   DG + 
Sbjct: 1   MIPV-TLAQVVADCNATTAGDTPPDVAREQISSLTADTRTVSGGEVFAAIKGARVDGAEL 59

Query: 57  ILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK------AT 109
              A+  GA  VV +      + G+    V  VDDV  A+  LA A   R++        
Sbjct: 60  AGAALSAGARAVVTSDPSTAVASGADPARVIVVDDVEKAIGALARANLQRARAEGNPALK 119

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGSVGKTT K++L   + S     A  GS+NN +G+P+T+ R        + E+G 
Sbjct: 120 VVAVTGSVGKTTVKDLLASLVESRGPVIAPPGSFNNELGLPITVLRTDAGTATLVLEMGA 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            H+G I +LT +  P  + +  +A AHL  F GI+ +  AK+E+  G  + G + LN DD
Sbjct: 180 DHVGNIDYLTSIAPPDASAVLIVARAHLGEFGGIDNVGRAKSELVTGTREGGVVVLNADD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI 288
                +   +H      + +F      D   R     ++  +   +       +V    +
Sbjct: 240 PRVAAMAGLAHG----PVLTFSARGAGDVAARNIDVGADGRASFTLVTPEGEADVKLRLV 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    +   L          LS                  G  T+ID+SYNA
Sbjct: 296 GEHHVANALAAAALAHSLGIPTAQIASTLSAVGAASPHRMDV---FEAGGATVIDDSYNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM+A ++ L ++      R++AVLG+M E+GE S   H  + +  +   ++ +   G
Sbjct: 353 NPDSMRAGLAALERL--GRGRRKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAVG 410

Query: 409 FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                L  A     +   ++   +G    + ++L  GDVV+VK SN  G +++ + L EE
Sbjct: 411 EEARPLASAAEAEGVDATWAAGPEGALRELDAALAAGDVVLVKGSNGSGVWKVADSLREE 470


>gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
 gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
          Length = 504

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 142/494 (28%), Positives = 209/494 (42%), Gaps = 38/494 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +A+ G     + P   +   + DSR +      + A  G   DGHDFI 
Sbjct: 1   MIAL-TAAQIAEAVSGTLSATLDPATVLVHATPDSREVTAEGTLYVAKPGERADGHDFID 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAIT 114
            A+  GA  V+      A  G+   P   V+D + A+  LA       R  S  T+I IT
Sbjct: 60  AALGAGAAAVLAERATHAPDGAAH-PAIIVEDAVLAMGALAREIVRRVREHSPTTVIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTK++L   L++   T A +GSYN  +GVPLT+ R  +D    + E+G  H+G 
Sbjct: 119 GSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRSLVVEMGADHVGN 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +L  +VRP I V+  +  AH  +F G+  IA  K E+ E L   G   LN DD     
Sbjct: 179 IAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAG 238

Query: 235 LKAKSHALGIKTIYSF-----GKSKNAD----------FQLRKWKQCS-EQSWMEVQLQG 278
           + A++ A     I  F     G ++ A+             R  +    E+   ++Q+  
Sbjct: 239 MAARTAA----PITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPLFDLQVGT 294

Query: 279 KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               V H       G H   N+L           D     + L           R     
Sbjct: 295 DEAAVRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLG--PASRFRMERTD 352

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T+I+++YNANP SM+AA+  L+ +      R  AVLG+M E+G+     H  + E
Sbjct: 353 RADGVTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGE 412

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +   NI+ + + G     L              H+ +       F+   L  GD+V+VK
Sbjct: 413 SVVRLNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLTEHLRPGDLVLVK 472

Query: 451 SSNSCGFYRLINLL 464
           SSN  G   L   L
Sbjct: 473 SSNGVGLAALGERL 486


>gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 465

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/477 (25%), Positives = 203/477 (42%), Gaps = 31/477 (6%)

Query: 6   TFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           TF DL++ + G             +  IS DSR+I   + F  + G  +D HD++  A  
Sbjct: 4   TFKDLIK-LWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAFD 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+      +  + +P + V D L A  ++A+  R      ++A+TGSVGKTTT
Sbjct: 63  LGIQAAVVSEKYNGLVP-IGLPHWVVPDTLYAYQQIALLHRRNLNLPVVAVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++   LS + +  +  G+ NN IGVP TL          + E+GM   G+I  L+ + 
Sbjct: 122 RELIRAILSPLGEIVSSRGNENNDIGVPKTLLSGSETDAAFVLEMGMRGFGQITRLSRVA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT +  AH+      E IA AK+EI   L   G + + + D   E    +  + 
Sbjct: 182 EPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVIIPFGDYILEKALLEKWSG 241

Query: 243 GIKTIYSFGKSKN-----------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            I  +   G S N            D +     Q   Q+   +  +G+  +      G H
Sbjct: 242 RIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQIDMQNNF-ILFEGRKFK--LPLEGRH 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N L+ L + + L   +    +     +   GR +   C    G + ++DE+YNA+P 
Sbjct: 299 NAMNFLLALTVATELGLSIKKLDQL--KINMPIGRNRLVDC----GQYLVLDETYNASPE 352

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GF 409
           S+ A++ +L        GR  AVLG M E+G  S   H  + +      ++ +     G 
Sbjct: 353 SVIASLELL----VSKPGRHFAVLGTMLELGSESILLHQKVLKKAIELGLTGIVFVSCGE 408

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +K  +    +           + +   L  GD +++K S      +++  L +
Sbjct: 409 ESNIIKKTIKELPNHDVVSNPKDAAMSLLPWLSPGDNILIKGSRKLELEKVLPYLQK 465


>gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium variabile DSM 44702]
          Length = 505

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 130/497 (26%), Positives = 199/497 (40%), Gaps = 36/497 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++     G  + G  P   V G +  DSR +     + A+ G   DGHDF+ 
Sbjct: 1   MIEL-TAGEIADITGGTLVDGADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVG 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSI-----------------PVFGVDDVLGALNKLAVA 101
            A++ GA LV+                               P    + V+ A+++LA  
Sbjct: 60  PALEAGAALVMAGRPTALPELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARH 119

Query: 102 ----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T+I +TGS GKT+TK++L    S   +T A  GS NN IG P T+ +  
Sbjct: 120 STEVLVAENRLTVIGVTGSAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPYTVLKAG 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + + E+     G I  L  +  P I V+  +  AHL  F   E IA AK E+ E L
Sbjct: 180 RTTKYLVAEMSARGQGHIAHLARIAPPRIGVVLNVGTAHLGEFGSREGIAQAKGELVEAL 239

Query: 218 EK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWM 272
                 G   LN DD     +  ++ A  +      G    AD++         +  S++
Sbjct: 240 PPAAEGGVAVLNADDDLVSGMAPRTAARVVYYSADQGADGTADYRASDITLDEVARASFL 299

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +G+ ++V     G H   N L                  A ++         R   
Sbjct: 300 LHHPEGEPVKVSLGVFGAHNVANALAAAAAAIECGLAPSEV--ASALTGYTAASANRMDV 357

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHID 391
                  T+I++SYNANP SM+A I  L+  +    G    AVLG M E+GE +   H  
Sbjct: 358 RTRPDGLTVINDSYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAELGEDAVGEHTG 417

Query: 392 LAEVLSLYNISHVWLS--GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSS-LVDGDVV 447
           +   L+   I  + +   G +  AL  A     I     + +DG    +  +    GDVV
Sbjct: 418 IGAYLAERGIDRLIVVGHGVNQDALAAAGEDNGIRTRQVDDVDGAVNLLTGAPTHPGDVV 477

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK+S S G +R+   L
Sbjct: 478 LVKASYSDGLWRVAERL 494


>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           petrophila RKU-1]
 gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga petrophila RKU-1]
          Length = 426

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 196/440 (44%), Gaps = 26/440 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            ++S+ +   + F A+KG  +DGHDFI  A++ GA  V+     V S       +F V+ 
Sbjct: 10  VLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR-----IFLVES 64

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            + AL KLA         T++ ITGS GKTTTKE+L   L + +  +   G+ N   G+P
Sbjct: 65  SVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLP 124

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   E I   K
Sbjct: 125 LSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNAHLEFFGTRERIMETK 184

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +  ++  T    +DD               +    FGK +  D  L+ W      +
Sbjct: 185 MEIIKHSKENATAVTLFDDPDLRR-----EVPCYRKTLFFGK-EGGDSVLKDWWYYEGST 238

Query: 271 WMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             E +       V   G        N+  +L ++  L   VD  I  L+      GR   
Sbjct: 239 IAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPGRFNV 296

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +    ++D++YNA+P + + +I  L +      GRR AV+G M E+GE S+ FH
Sbjct: 297 RE----KKDVLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L E L++  +  V++  F      + +     +  S+  + +   + S + +GDVV+ 
Sbjct: 349 EELGERLNV--LDGVYI--FLSEPEAEWIKSKKIILKSDDPEKIAKDLASRVTEGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEFP 469
           K+S +    +++ +  +E  
Sbjct: 405 KASRAVRIEKVLEMFEKELE 424


>gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
 gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/469 (24%), Positives = 196/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +      L++PV    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 I  F    +A+ Q+            + +     +M V    +G H A+N L  
Sbjct: 239 G---NPILDFALH-DAERQVEAQVTGRLHGGELAIDTPSGAMTVHLRALGEHNARNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358
                    ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI 
Sbjct: 295 AAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAID 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        A 
Sbjct: 355 VLAAQPAP----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAY 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   H+ +    +   + +       V+VK S      R+++ L  +
Sbjct: 411 GDTAR-HFGDVGALVTALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 434

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 135/442 (30%), Positives = 219/442 (49%), Gaps = 28/442 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+IDSR   P+  FFA+KG + DG+ F   A+Q GA   V++   VA+          V
Sbjct: 16  NITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDPDVAADDR----YIVV 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL A+ +LA   R + KA IIA+TG+ GKTTTKE++   L+   K      ++NNHIG
Sbjct: 72  PDVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTERNHNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  +  FG+ E+G +H GEI  L  + +P   +IT    AHL  F   E +  
Sbjct: 132 VPLTLLRLTEEDQFGVIEMGANHKGEIASLCDIAQPDFGIITNFGRAHLEGFGSFEGVIE 191

Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADF--QLRKWK 264
           AK E+F+ L +  G +F+N  +S    +  K+  +G     S+G + + AD    +    
Sbjct: 192 AKTELFDYLREHKGRVFINIGNSN---IVEKAKGIGN---ISYGINNDKADVSGYITGQN 245

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            C   SW   +    +  V  H +G +  +N+L  + +      + +   +AL  + P+ 
Sbjct: 246 PCISVSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEVEPNDINEALCGYIPEN 305

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   N     LI ++YNANP+SM AA+   + +       ++ +LGDM EMG+ 
Sbjct: 306 HRSQYMKTDRND----LIIDAYNANPSSMAAALRNFNSLPYPH---KMVILGDMLEMGDT 358

Query: 385 SQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +   H ++  ++ +  +I  V L G    ++              T+D L  +++++   
Sbjct: 359 AVEDHEEIVNIIRNQLSIDEVLLVGEIFASIDSGYKT------FVTVDDLSAYLEANPPK 412

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
              V++K SN  G  R+I  L 
Sbjct: 413 DTAVLLKGSNGIGLERIIAYLK 434


>gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
 gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
          Length = 463

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 200/472 (42%), Gaps = 25/472 (5%)

Query: 2   NPLWTFH---DLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            P+ T     DLL+A I    +       +  +  D+R++A  + F A+KG  +D +  +
Sbjct: 7   TPMMTLRQAFDLLRARIPAARLVGDGATPLMRVHTDTRTLAAGDLFVALKGERFDANSLL 66

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A                ++ +  +P   V D L AL  LA   R +    ++A+TGS 
Sbjct: 67  PQAR----AAGAAAAIAHGALEAAGLPGVEVPDTLAALGVLAAGWRAQRTLPLVAVTGSN 122

Query: 118 GKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTT  +M+   L + K   A    G++NN +G+PLTL R+    +  + ELGM+H GEI
Sbjct: 123 GKTTVTQMIASVLRAWKGDAALATQGNFNNDVGLPLTLLRLRPAHEAAVVELGMNHPGEI 182

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  + RP +A++      HL     +E +A     +   L   G       D+F  L 
Sbjct: 183 AYLAGIARPTVALVNNAQREHLEFMHTVEAVARENGSVLAALCAGGVAVFPAADAFTPLW 242

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +   G     +FG    AD +    +       + VQ    + + +    G H   N
Sbjct: 243 RELA---GAHRCITFG-GDAADVRCAHAQWQDGAWHLRVQTPQGAFDTLLSIAGRHNVTN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L          A +    + L+ F P +GR + +          ++D+SYNANP S++A
Sbjct: 299 ALAAAACALAAGAPLAAIARGLAAFEPVKGRSRAFAVRCQGRAIAVVDDSYNANPDSVRA 358

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+++     G R+ VLGDM E+G     FH +         I  V+  G     + 
Sbjct: 359 AIDVLAELP----GPRLLVLGDMGEVGGQGPQFHAEAGAHARSRGIEQVFALGALSAHVA 414

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            A        + E M  L   +++ L     V+VK S      R++  + EE
Sbjct: 415 GA-------RHFEDMASLIAAVRAQLPGVGSVLVKGSRFMKMERVVQAIEEE 459


>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
 gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
          Length = 437

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 200/445 (44%), Gaps = 29/445 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    T   L   +    + I        + GI  D+R + P E F A+ G  +DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLLNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+          ++PV  V + L A  +LA   R +    +I +TGSV
Sbjct: 61  EMAIARGAVAAIVDYTYDYP----NLPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +  K +   G++NN IGVP TL  +    DF + E+ M   G+I  
Sbjct: 117 GKTTTKELIASVLGTRGKVHKTYGNFNNEIGVPKTLLELSEGDDFAVIEMAMRGRGQIGE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LTH+ +P+I VIT +  AH+      + IA AK E+   +       LNYD+    LL  
Sbjct: 177 LTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMPNDSVAVLNYDNP---LLMT 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +    + S+G S   D Q +           ++++ G ++       G H   N L
Sbjct: 234 TAKQVWSGEVISYGFS-GGDIQGKLVDYQ------KIEVGGMTLP--LPLTGVHNGSNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D    ++A       +GR + ++         ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLDVDW-KLLEAGINVTMPQGRSQSWKLPK---DIMILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+Q       R+IAVLG M E+GE S   H  + E +   N+    V + G     + 
Sbjct: 341 ELLAQTP---GRRKIAVLGAMKELGERSAKLHQQVGETVRKLNLDGLLVLVDGPDAEIIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSS 440
            +  + I          L   ++ +
Sbjct: 398 TSA-QGIPCERCHNHSDLVSLLKPT 421


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 198/462 (42%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++   +     G      ++ I  DSRS+    +  FFA+K    DGH +I    QK
Sbjct: 4   TIEEITAILGAKRTGTTSST-IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    V+N    A+          V + L +L +LA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVINEIPEAASSYTDANFLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTVVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWLYQILSPDRTITRSPRSYNSQIGVPLSVWLMNEHTELGIFEAGISEMGEMEALRPIIQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I ++T I  AH  NFS +++    K ++F   +    I  N D+        KS    
Sbjct: 183 PTIGILTNIGGAHQENFSSVQDKCMEKLQLF---KDCDVIVYNGDNELITSCVTKSLFTA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S   S+   F + K  +    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSTKDSERPLF-IEKILKDDTGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +T  + +    P      R      +   TLI++SYN++ AS+  A+  + + 
Sbjct: 299 LYLMVPPETIAERMLHLEPIA---MRLEVKEGKNGCTLINDSYNSDFASLDIALDFMMRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S      R  +L DM E G+ S+  +  +A+++    + H+   G  + A  +     I 
Sbjct: 356 SEDKNRERTLILSDMLESGQTSKLLYRQVADLVHSRKVDHIIGVGEEISAAANRF--EIQ 413

Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +      L    + + L + D +++K +    F  + + L
Sbjct: 414 KDFFANTSELLNSGLLNQLHNED-ILIKGARVFHFDDITDAL 454


>gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase
           protein [Xanthomonas albilineans]
          Length = 501

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 121/505 (23%), Positives = 194/505 (38%), Gaps = 60/505 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +         G      ++ IS D+R +A    + A++G  +DGH F   A  +GA  ++
Sbjct: 9   IAHWADADLHGD--DVAIDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       +  + +P   V D   AL ++A   +      + AITGS GKT+ K +L   
Sbjct: 67  VER----RLPQIELPQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALLLAI 122

Query: 130 LS-----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L           YA  G++NN IG+PL +   P D D+ I+E+G    G+I +LT +  P
Sbjct: 123 LQYACRLDGGSVYANPGNHNNEIGLPLAVIAAPDDADYAIYEMGAGKPGDIAYLTDIAPP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++++  IAPAHL     +  +A  K  I+  L   GT  +N DD+F    + +  A   
Sbjct: 183 RVSLVNNIAPAHLERMGSLLGVAQTKGAIYAALPADGTAVINIDDAFGLWFEQQLSAASR 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    A     + +  ++++   +       E      G H   N L    +  
Sbjct: 243 PRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGRHNLLNALAAAALAL 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L          L+   P  GR   +      G   LID+SYNANP S+ AA        
Sbjct: 303 ALDVAPARIAAGLAQVQPVPGRQISHTLP---GGAVLIDDSYNANPGSLAAA----IDAL 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGDM E+G  +++ H           ++ ++  G        A   +  V
Sbjct: 356 AAIGGERWLVLGDMRELGAGAEALHASGGSRARAAGLTRLYALGPLSAHAAQAFGDNGRV 415

Query: 425 HYSETMDGLFLFIQSSLV-----------------------DGD--------------VV 447
              ++   L   +Q  L                          D               +
Sbjct: 416 --FDSHATLVEALQRDLAAVVAREKQDQKQETELMHDKTGVPSDGALPRVPGPGSRIPTL 473

Query: 448 VVKSSNSCGFYRLINLLL---EEFP 469
           +VK S      ++++ LL   EE P
Sbjct: 474 LVKGSRGSAMDKVVSALLGHAEEAP 498


>gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 433

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 202/439 (46%), Gaps = 25/439 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+Q+G   VVV+       G        VD
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDEAEYCVQGDER--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL A   LA   R      I+ ITG+ GKTTTKE+L   L         +G++NN IGV
Sbjct: 74  NVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGEKYNVLYTLGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  LV P +A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193

Query: 210 KAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266
           K E+++ +   K G +F++ ++     +           +  +G     D  +  K    
Sbjct: 194 KGELYDFMRQSKRGKVFVDANNPHLMGIAE------GLDLVKYGTPARPDLFVSGKVVSA 247

Query: 267 SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +       Q +G +  EV  H +G +   NML  + +   L    D A +AL+ + P   
Sbjct: 248 APFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAAISVGLYLGVSADEANRALAHYVPSNN 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +    A N+    LI ++YNANP SM  A++    +       ++A+LGDM E+G +S
Sbjct: 308 RSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVPH---KMAILGDMLELGAVS 360

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +S H  +A+ LS   +  VWL G        A  +         ++ +   ++    +  
Sbjct: 361 ESAHQAIADQLSQLALDEVWLVGPEFARTHCAFRK------FNDVEEVIAELKKHRPENH 414

Query: 446 VVVVKSSNSCGFYRLINLL 464
            ++VK SN     +L   L
Sbjct: 415 YILVKGSNGIHLDKLPQWL 433


>gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
 gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
          Length = 437

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 216/439 (49%), Gaps = 21/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R+I P   FFA+ G  ++G+ F   A++ GA L +V+  +      + +    V 
Sbjct: 16  ISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIVDEPIPIVDERIEV----VS 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L  LA   R + +  +I +TG+ GKTTTKE+L   LS     YA  G+ NNHIGV
Sbjct: 72  NVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +   ++  I E+G +H+GEI FL  + RP + +IT +  AHL  F   E +  A
Sbjct: 132 PLSVLAIDSAIELAIIEMGANHIGEIAFLCGIARPELGLITNVGKAHLEGFGSFEGVKQA 191

Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQC 266
           K E++E LE+  G +FL  D++    L + ++    K I ++G  K+ +   +L      
Sbjct: 192 KGELYEWLEEHKGVLFLQGDNNH---LLSMANNKTFKQIITYGLDKSNNISGELLSVNPV 248

Query: 267 SEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               W  ++  G   +VV  H  G +  +N+L  + +      + +   + ++ + P   
Sbjct: 249 LNLGWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGLYFGLNPEEINRGITAYSPTNN 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   N    T+I + YNAN +SM AA+  L  I      +++++LGDM E+GE +
Sbjct: 309 RSQITQTEKN----TVICDYYNANASSMWAALDNLESIHAE---KKVSILGDMFELGEEA 361

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + H  L E +    +      G +    +        + Y E++D     +Q   +D  
Sbjct: 362 PTEHRRLIERIRGMKLYRKIFVGRNFFGQRQ---EEHDIEYYESLDAAKQALQEKPLDNT 418

Query: 446 VVVVKSSNSCGFYRLINLL 464
            V++K+S    F  L+  L
Sbjct: 419 TVLLKASRGMAFEGLLQYL 437


>gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 427

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 198/440 (45%), Gaps = 25/440 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            ++S+ +   + F A+KG  +DGHDFI  A+++GA  V+    +V S       +  V +
Sbjct: 10  VLNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSDR-----IVLVKN 64

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            +  L +LA      S  TII ITGS GKTTTKE+L   L   +  +   G+ N   G+P
Sbjct: 65  TVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEYGLP 124

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++       +  + E+  +  G+I  L  +  P +AV+  +  AHL  F   E I  AK
Sbjct: 125 LSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNVGSAHLEFFKSRENIMEAK 184

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +  +K   +   +DD     L+ K   L  + +  FG +K  D  L  W      +
Sbjct: 185 LEIVKHSKKDSAVVTFFDD---GDLRKKVPVLR-ENVLFFG-TKGGDVVLEDWWYYENST 239

Query: 271 WMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             E ++ G S  +   G        N+  +L ++ +L   VD  +  LS      GR   
Sbjct: 240 ISEYRMFGSSFTIKLPGFWNRGQLLNLAASLCVMKVLGEKVD--VLELSNLKAVPGRFNV 297

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      +ID++YNA+P + + AI  L +      GR+ AV+G M E+GE S+ FH
Sbjct: 298 KEVE----GVRIIDDTYNASPEAFQMAIEALLKFP----GRKFAVVGAMKELGEESKKFH 349

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L + L    +  V++      A    +     V  +++ + +   + + +  GD V+ 
Sbjct: 350 EMLGKQLD--ALDGVYVFSTEPEAGW--IKTRKKVLETDSAEEIARDLYTRVRKGDTVLF 405

Query: 450 KSSNSCGFYRLINLLLEEFP 469
           K+S +    R++ +   E  
Sbjct: 406 KASRAVRIERVLEIFERELK 425


>gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
 gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
          Length = 447

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 192/457 (42%), Gaps = 33/457 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G  +G  P   V G SIDSR++ P + +  I     DGH +I  A+  GA
Sbjct: 4   STSELAAHLGGELVG--PDVGVEGASIDSRTLRPGQLYVPIVAER-DGHAYIPAALDAGA 60

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   + V            V D   A+ +L V AR R     I +TGSVGKTTTK++
Sbjct: 61  PAYLTEQEPVGGTA------IRVGDTAAAMLRLGVLARGRVGG-AIGVTGSVGKTTTKDL 113

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  +T A   S+NN +G+PLTL   P    + + E+G    G+I  L  + RP 
Sbjct: 114 LAGCLAARFRTAASERSFNNELGLPLTLFNAPEAARWAVLEMGARRAGDIERLAAVARPE 173

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++T++  AHL     ++ +A  K E+   L  +G   LN+DD     + +    L   
Sbjct: 174 VGIVTSVDMAHLEYMGDLDGVARVKGELVAALPASGLAVLNFDDPRVRGMAS----LSAS 229

Query: 246 TIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  +    +AD +        + ++   +       EV     G H   N L    +  
Sbjct: 230 PVLGYSVGGDADVRADDVTLDQDLRARFRLSSPWGQAEVRLGVHGLHQVPNALAAATVAL 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T     +     +G   R           L+ + YNA P S +A +  L+ + 
Sbjct: 290 WCGVPIETVA---AALAQSKGSPWRMEVHHMPDGPLLVVDCYNAMPTSTEAGLRSLAALP 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                R++A+LG M E+G+ S+S H  +A V     I  V   G+      +A       
Sbjct: 347 GE---RKLALLGLMAELGDHSESEHRRIARVAEELGIEAV---GYETPLYGEA------- 393

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            Y    +     ++ +L  GD  +VK S       ++
Sbjct: 394 -YVTGAEEAVALLR-TLGTGDAALVKGSRVTRLEDVV 428


>gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 400

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/424 (29%), Positives = 205/424 (48%), Gaps = 25/424 (5%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            FFA+KG +++G+ F   A++KGA  V+++     +          V++VL  L +LA  
Sbjct: 1   MFFALKGDNFNGNTFSTEALKKGAKYVIIDELEYNTSSQT----ILVENVLETLQQLATY 56

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            R      II +TGS GKTTTKE++   LS    T A  G+ NNHIGVPLTL  M  D +
Sbjct: 57  HREYLNIPIIGLTGSNGKTTTKELINTVLSKKYNTTATKGNLNNHIGVPLTLLSMTKDTE 116

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKT 220
            GI E+G +HL EI FL+++ +P    IT    AHL  F  I+ + + K+E++  L    
Sbjct: 117 IGIVEMGANHLKEIEFLSNIAKPDFGYITNFGKAHLEGFGSIQGVINGKSELYNYLITYK 176

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             IF N DD    +   K     +K+    G S     QL          ++ ++ Q + 
Sbjct: 177 KHIFFNADD---TIQNEKLSNYNLKS----GFSNQTQNQL-NINFLEANPFVTLKFQDQI 228

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      IG +   N+   + I S           A+  + P   R +     +N+    
Sbjct: 229 IT--SQLIGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNNRSQ----IINKNSNK 282

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I ++YNANP SMKAA+   S ++      +IA LGDM E+G+ +Q+ H ++ ++++  N
Sbjct: 283 IILDAYNANPTSMKAALENFSNLNATY---KIAFLGDMFELGDEAQAEHQNITDLITTLN 339

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           I+ V+L G +  + K     +  +   +T + L     +  +    +++K S      R+
Sbjct: 340 INTVYLIGTNFNSTK---TENKKIKQYKTFEALKKSFNTIDITNATLLIKGSRGMALERI 396

Query: 461 INLL 464
           ++L 
Sbjct: 397 VDLF 400


>gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 468

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/469 (23%), Positives = 195/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++        + +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHAPADVAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I         +  D Q            + +     ++ V    +G H A+N L   
Sbjct: 239 GNRILDFALHDAERQNDAQ---IVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  + ++      T++D++YNANP SM+AAI V
Sbjct: 296 AAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAA----HPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L    + +       V+VK S      R+++ L  +
Sbjct: 412 DTAR--HFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM
           22836]
          Length = 429

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 214/438 (48%), Gaps = 27/438 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R+      FFA+KG +++G+++   A+ +G    VV+ +  A+  +    +  V 
Sbjct: 16  ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPN----IILVK 71

Query: 90  DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D L  L +LA   R +  K  IIAITG+ GKTTTKE++   LS      A  G+ NNHIG
Sbjct: 72  DSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + +  I E+G SH+GEIRFL  +  P+  +IT +  AH+  F   E +  
Sbjct: 132 VPLTLLRIKKEHEIVIVEMGASHVGEIRFLAEMALPNYGLITNLGHAHIEGFGSFENVVK 191

Query: 209 AKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           AK E++E +   K G IF++Y +     +       GI +IY +G   +  F   K    
Sbjct: 192 AKGELYEFIRSTKDGKIFIDYSNLLLREMSE-----GITSIY-YGLEDDL-FISGKVTSI 244

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S    +E +   K  +V  + IG +   N L  + I   L        KA+  + P   R
Sbjct: 245 SPFLALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASLICKAIEEYVPTNNR 304

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N     LI ++YNANP SM AA+     +  +    ++ +LGDM E+G  + 
Sbjct: 305 SQLKKTEKN----MLIIDAYNANPTSMHAALENFDHMDVNH---KVLILGDMKELGPDTD 357

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  +A+ +S +N   V   G +   +K   PR       + +D L  +++   V+   
Sbjct: 358 MEHQKIADYISDHNFERVMFIGDNFSRVKTKYPR------FKNLDDLKEYLKKDPVEDSY 411

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      + I++L
Sbjct: 412 ILLKGSRGVQLEKCIDML 429


>gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
          Length = 465

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 204/477 (42%), Gaps = 31/477 (6%)

Query: 6   TFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           TF DL++ + G             +  IS DSR+I   + F  + G  +DGHD++  A  
Sbjct: 4   TFKDLIK-LWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAFD 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+      +    +P + V D L A  ++A+  R      ++A+TGSVGKTTT
Sbjct: 63  LGIQAAVVSEKYNGLVP-TGLPHWVVPDTLYAYQQIALLHRRNLSLPVVAVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++   LS + +  +  G+ NN +GVP TL          + E+GM   G+I  L+ + 
Sbjct: 122 RELIRAILSPLGEIVSSRGNENNDVGVPKTLLSGSETDAAFVLEMGMRGFGQITRLSRVA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT +  AH+      E IA AK+EI   L   G + + + D   E    +  + 
Sbjct: 182 EPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVIIPFGDYILEKALLEKWSG 241

Query: 243 GIKTIYSFGKSKN-----------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            I  +   G S N            D +     Q   Q+   +  +G+  +      G H
Sbjct: 242 RIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQIDMQNNF-ILFEGRKFK--LPLEGRH 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N L+ L + + L   +    +     +   GR +   C    G + ++DE+YNA+P 
Sbjct: 299 NAMNFLLALTVATELGLSIKKLDQL--KINMPIGRNRLVDC----GQYLVLDETYNASPE 352

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GF 409
           S+ A++ +L        GR  AVLG M E+G  S   H  + +      ++ +     G 
Sbjct: 353 SVIASLELL----VSKPGRHFAVLGTMLELGSESILLHQKVLKKAIELGLTGIVFVSCGE 408

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +K  +    +     T     + +   L  GD +++K S      +++  L +
Sbjct: 409 ESNIIKKTIKELPNHDVVSTPKDAAMSLLPWLSPGDNILIKGSRKLELEKVLPFLQK 465


>gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Francisella cf. novicida 3523]
          Length = 453

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 220/469 (46%), Gaps = 24/469 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ           +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYSGEDVSIQTVAINSNEVRQDCLFVAIIANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+         L IP     + +  L  LA   R      II++TGS GKTT K
Sbjct: 59  GAKAVLVSKKQ-----DLDIPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L S KK +   G++NN++GVP+T+   P +VDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGS-KKVHFTQGNFNNYLGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +  +HL N   ++ +   K E+ + L K G   +N DD   E + A +  L 
Sbjct: 173 PNIAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIVNLDD---ERIPAYADKLD 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +++AD  +  ++   E   +++++  K        IG H   N ++ +  V
Sbjct: 230 CKKITCSMSNQDADILILDYQVTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + ++ ++        +G   R+         TL+D++YNA+  +++AAI  L++ 
Sbjct: 290 VAAGFEPNSFLQNTQNIKNYKG---RFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G+R+  +  M E+G+ ++++H  + + L+  N+  ++L G  +++       ++ 
Sbjct: 347 ----DGKRVIAITSMRELGDEAENYHRKMGQWLNKANLDKIFLFGEKNLINFALEEYKNS 402

Query: 423 HVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEE 467
           ++ Y +    L   +   L +       + +K + S     ++  + + 
Sbjct: 403 NIKYYDDKQQLNDDLLKVLTEYKSQNTKLTIKGARSFKMEEVVAFVKQR 451


>gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 500

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/504 (26%), Positives = 210/504 (41%), Gaps = 44/504 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++     G  I G   +  V G +  DSR +AP   F A+ G   DGHD++ 
Sbjct: 1   MIEL-SAGEIAAITGGELIDGAAAETIVAGPVEFDSRKVAPGSIFMALPGATVDGHDYVA 59

Query: 59  HAVQKGAGLVVVNTDMVASI----------GSLSIPVFGVDD---VLGALNKLAVAARLR 105
            A ++GA L +V   +              G+ +  VFG D+       L  +   AR  
Sbjct: 60  AAGEQGAALAIVGRPVGYPALLAPASERAEGTDNSAVFGADEEGYGAAVLAAVDKLARHN 119

Query: 106 SK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           +          ++ +TGS GKT+TK+++   L  + +T A  GS+NN IG+P T  R   
Sbjct: 120 TDVLADEEGMVVVGVTGSAGKTSTKDLIGALLGDLGETVAPPGSFNNEIGLPYTALRASR 179

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E+    +G I  LT +  P I V   +  AHL  F   E IA AK E+ E L 
Sbjct: 180 GTKFLVSEMSARGVGHIAHLTTVTPPKIGVELNVGSAHLGEFGSREAIAQAKGELVEALP 239

Query: 219 K---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQLRKWKQCS-E 268
                G   LN DD     ++ ++ A     + +F         + AD+     +     
Sbjct: 240 AAEDGGIAILNADDDAVIAMRHRTRA----RVVTFALDERSKTGERADYWASDIRLDEVA 295

Query: 269 QSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           ++   +    G+ +++     G H   N L    +         +  + L   +      
Sbjct: 296 RASFRLHHPYGEPVDIRLGVFGAHQVSNALAAAAVAVESGMLPASVARVLG--NHVAASA 353

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQ 386
            R      +   T+I++SYNANP SM+A I  L+       E    AVLG M E+GE S 
Sbjct: 354 NRMDVRTRRDGATIINDSYNANPESMRAGIDALAYTAGGRPEASSWAVLGQMGELGEESA 413

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPR-SIHVHYSETMDGLFLFIQSSLVD 443
             H +L + L    I H  + G  V   A+ DA     +     E +D    F+   +  
Sbjct: 414 EEHTELGKFLGTRGIDHAVIVGTGVNQRAIADAAREHGVDTRSVEDVDAAVNFVDQHVKP 473

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
            DVV+VK+S S G + +   LL +
Sbjct: 474 KDVVLVKASYSDGLWAVAEGLLAD 497


>gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
 gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
          Length = 468

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 109/469 (23%), Positives = 193/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++          +S DSR++   + F A+KG  +D HDF+      
Sbjct: 3   MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAQAPAGVALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F    +      +         + +     ++ V    +G H A+N L   
Sbjct: 239 G---NRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  R +       T++D++YNANP SM+AAI V
Sbjct: 296 AAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAAQPAP----RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACAAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L   + ++    D  V+VK S      R+++ L  +
Sbjct: 412 EAAR--HFDDVGTLVDALLAAGYGADASVLVKGSRYMKMERVVDALTNQ 458


>gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
 gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
          Length = 475

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 204/466 (43%), Gaps = 24/466 (5%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++     G    +      V G+ IDSR +A    F A+ G   DGHDF   A   G
Sbjct: 4   TLREVAVVCGGRLDAVDDHDAAVTGVVIDSRQVAAGALFVAVAGERVDGHDFAAAAAGAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+    +      ++         + AL  LA   R RS AT++A+TGS GKTTTK+
Sbjct: 64  AVAVLAARPVGVPAVVVAD-------PVAALAALAAQVRTRSSATVVAVTGSAGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L  +  T A  GS+NN IG+PLT+ R+     F + E+G    G I  L  L RP
Sbjct: 117 LLADLLGELGPTVAAAGSFNNEIGLPLTVTRIEPATRFAVLEMGARGPGHIAALCELARP 176

Query: 185 HIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            I V+  +  AHL     G   IA AK E+ E    +  + LN DD     + A++    
Sbjct: 177 RIGVVLNVGSAHLGQYADGRAGIARAKGELAEA--ASDAVVLNADDPLVAGMAARARG-- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + +FG+ + AD +    +   +  +  ++   G+   V    +G H   + L    +
Sbjct: 233 --EVITFGEGERADVRAHDVRVGDDGRARFDLVAAGERHPVALTLVGEHQVGSALAAAAV 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L      A  A ++   +     R   A+     T+I+++YNANP SM+AA+  L  
Sbjct: 291 AIRLGLPPARA--AEALSRARARSRWRMEVAVTDTGVTVINDAYNANPESMRAALKTLVD 348

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           +S     R  AVLG M E+G  +   H  L  ++    +  +   G     +        
Sbjct: 349 LS--RGRRAWAVLGGMEELGASADDEHDALGRLVVRLGVEQLVAIGERARRIHLGASLEG 406

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             S    +   ++     ++  LV GDVV+VK+S + G  R+ + L
Sbjct: 407 SWSGESVWVADVEQACTLLREQLVPGDVVLVKASRAFGLERVASEL 452


>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
 gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
          Length = 460

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T   L++ I G  +G+     ++     +  DSR +     F  + G  +DGH F++ 
Sbjct: 1   MLTLRQLIE-IWGDPVGLQHPDLLDQPLGPVCTDSRQLVAGAFFVPLVGERFDGHRFLVE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  + A   VV T     +    +  + V+D L A   LA A R +    ++A+TGS GK
Sbjct: 60  AAARPAQAAVVATAWSDPVPPGLL-HWRVNDTLEAYQMLARAHRRQLPCPVVAVTGSAGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+E++  AL+ +    A  G+ NN +GVPLT+  +  +    + E+GM   GEI  L+
Sbjct: 119 TTTRELIRAALAPLGVVQASSGNNNNDVGVPLTVLGVGPEHGAAVIEMGMRGPGEIARLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT I  AH+      E IA+AK EI   L   G + +   D   E   A+ 
Sbjct: 179 RCAEPQIAVITNIGTAHIGRLGSREAIAAAKCEITASLAADGLVVIPAGDPLLEAALAQC 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHMAQNM 296
            A  ++ +       +A   +R          ++V    L+ + + +     G H A+N+
Sbjct: 239 WAGRVRRV---ALEGDALESVRPEAPVDRLGVVDVCAGVLRLEGLAIRLPLEGRHNARNL 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ L +   L   +              GR +R   A       ++DE+YNA+P ++ AA
Sbjct: 296 LLALTVAQELGVPLAQLQDL--KVAVPGGRNRRIELA----GIQVLDETYNASPEAVFAA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + +L+    H  GRR AVLG M E+G+ S + H  +AE      +  + L      A   
Sbjct: 350 LELLA----HQAGRRFAVLGAMLELGDQSVALHRQVAERAVACGLDGLVLVMAGAEADAM 405

Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +   +T +     + + L  GD +++K+S      RL+  L
Sbjct: 406 AEAAAPLPRLQRVDTPEQAVPVLAAWLQSGDTLLLKASRGVALERLLPEL 455


>gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 134/518 (25%), Positives = 212/518 (40%), Gaps = 64/518 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++     G    +  P   V G +  DSR + P   F A+ G   DGHDF  
Sbjct: 1   MIAL-TLQEIADITGGRLDCVPDPAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------------------------LGA 94
            AV+ GA  V+           + +P   V+                          + A
Sbjct: 60  KAVESGAVAVLAARP-------VGVPAIVVEPTGKVEGDGANADIYANDEDGSAAAVIQA 112

Query: 95  LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ LA A   R        I+ +TGS GKT+TK+++     +  +T A  GS+NN +G+P
Sbjct: 113 LSALARAVTQRLAAEDGLNIVGVTGSAGKTSTKDLIATIFRAAGETVAPPGSFNNEVGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R     ++ + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTEYLVAEMSARGIGHIRHLTGITAPKVGVVLNVGTAHLGEFGSRENIALAK 232

Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNADFQLRKWKQ 265
            E+ E L    + G   LN +DSF   +  +++A  +    +   G +  A +     + 
Sbjct: 233 GELVEALPSAAEGGVAVLNANDSFVAGMALRTNAKVVYYSAVAKQGSTPPAQYYATDVQL 292

Query: 266 CS-EQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               ++   +   G + + V     G H   N L        L    +    ALS     
Sbjct: 293 DDVARASFLMHTPGHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALSGHRIA 352

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCEMG 382
                R      +   TLID+SYNANP SM+ A  ++    +   + R IAVLG+M E+G
Sbjct: 353 SEH--RMDVRNRRDGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMGELG 410

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALP-RSIHVHYSETMDGLFLFIQS 439
           + +   H  L   L+ Y++ H+   G   +  A+ +A   + I+   S  +D     + S
Sbjct: 411 DDALDAHRQLGAELAKYHVDHLVAVGSSPNTRAMAEAAQAKGINTSVSVDVDEAAKIVDS 470

Query: 440 SLVD-------------GDVVVVKSSNSCGFYRLINLL 464
            L                DVV+VK+SN+   + +   L
Sbjct: 471 LLRTPPVGVDDWPQRDVKDVVLVKASNAQRLWLVAEKL 508


>gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
 gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/443 (28%), Positives = 197/443 (44%), Gaps = 30/443 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG +++G+ F   A++ G+   +V+    A  G        
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVDEVEYAPAGDPH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD  L  L +LA   R +    II ITG+ GKTTTKE++   LS         G+ NNHI
Sbjct: 72  VDSCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLSPKYTILYTQGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLKAEHDLGIIEMGASHPGDIKELVDIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K E+++ L   K  TIF+++D+ +   +     A G+  I S+G              
Sbjct: 192 KTKGELYDYLRERKDSTIFIHHDNLYLRNI-----AWGLNQI-SYGSEDGLYI---NGHV 242

Query: 266 CSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                ++  +      G+  EV    IG +   N L  + I      +      AL  + 
Sbjct: 243 TGNSPYLTFEWKAGKDGEHHEVKTQLIGEYNFANALAAVTIGHFFDVESGKIDTALKEYT 302

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P+  R +  + A N    TLI ++YNANP SM+A+IS    +       ++ +LGDM E+
Sbjct: 303 PQNNRSQLKQTADN----TLIIDAYNANPTSMQASISNFHNMEIDN---KMLILGDMREL 355

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+     H  + + L+      V L G    A +   P             +   +Q + 
Sbjct: 356 GKDGPKEHQKIVDFLTECGFKDVMLVGEQFAAARHDFPT------YPDAPAVIEALQKNK 409

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             G  +++K SN      +I+ L
Sbjct: 410 PHGKTILIKGSNGIKLSTVIDYL 432


>gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
 gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 203/468 (43%), Gaps = 25/468 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            V G SIDSR+I   E FFA+ G   DGHD++  A+  GA
Sbjct: 4   TLGQVADWIHAEGDFTTSSEAV-GYSIDSRTIGAGELFFAVTGDRVDGHDYVEAALANGA 62

Query: 66  GLVVVNTDMVASIGSLSI---PVFGVDD----VLGALNKLAVAARLRSKATIIAITGSVG 118
              VV+   +AS     +    +  V +    VL A+  LA+  R      +I +TGS G
Sbjct: 63  VAAVVSNRWLASDEPREVDPCKLLWVPEGEECVLRAMQLLALRVRQSWGGRVIGVTGSAG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   LSS        G+ NNH GVPL L R+  + +  + E+GM+H GEI+ L
Sbjct: 123 KTTTKEMVATVLSSQFSVLKSAGNLNNHFGVPLQLLRLEAEHEVAVIEMGMNHSGEIKRL 182

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             +  P   V++ +A  HL  F +GI  IA+AK E+ E L   G   LN DD +      
Sbjct: 183 AEIAEPQWGVVSNVAAVHLEFFPAGIAGIAAAKRELIEALPSDGLAILNGDDEWVRGF-- 240

Query: 238 KSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               +G+ ++  +G    A  +     +   +     V   G + EV    +G H   N 
Sbjct: 241 ---GVGVDSVL-YGLGDEAQVRATNVVEAGLDGVSFTVHAGGDTAEVHLALLGKHNVSNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +       +     AL+     + RG             L+++SYN+NP ++ A 
Sbjct: 297 LAAIAVGWKSGMTLTACAAALAEMRATDKRGAVIEWR----GAKLLNDSYNSNPKALDAM 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L         RRI V G+M E+G    + H      ++   +    + G   LA   
Sbjct: 353 VDALISTPAT---RRIVVAGEMLELGPEGPALHKACGRRMAEQGVD--LIVGVRGLAADL 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    + ET +    ++ +++  GDVV++K+S      R +  L
Sbjct: 408 VSGAGEKAVFVETPEAAGNWLTANVKAGDVVLLKASRGVRLERALEKL 455


>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 471

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 122/476 (25%), Positives = 196/476 (41%), Gaps = 38/476 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L     G   G  P   V+ I+ D+R+++    + A++G  +DGHDF   A+ +GA  ++
Sbjct: 9   LAHWAGGELHG--PDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       +  +  P   V+D   AL ++A   +    A ++AITGS GKT+ K ++   
Sbjct: 67  VER-----LLDVDAPQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALVLSV 121

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L    + YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + RP ++++
Sbjct: 122 LQQAGQAYANPGNRNNEIGLPLAVIDAPEDADFAIYEMGAGKPGDIAYLTDIARPDVSLV 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HALGIKTI 247
             IA AHL     +  +A+ K  I+  L   GT  +N DD+F    + +    A   + +
Sbjct: 182 NNIAAAHLERMGDLLGVATTKGAIYAALPAGGTAVVNADDAFGAWFEQEVVRPAGTGRQL 241

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             FG   +A+   R  +  +E S   +        +     G H  +N L    I     
Sbjct: 242 LRFGLDASAEVTARDVQAGAEGSRFVLVTPQGEAAIELALPGRHNVRNALAAAAIGLACG 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +      L    P  G   R       G   L+D+SYNANP S+ AA           
Sbjct: 302 VSLAAIAAGLGQARPVAG---RQVAHGLPGGVVLVDDSYNANPGSVAAA----IDALAAS 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
                 VLGDM E+G  + + H D         ++ ++  G        A        + 
Sbjct: 355 GDEAWLVLGDMRELGPEAATLHADAGLRARQAGLARLYALGELSAHAARAF--GDEGRHF 412

Query: 428 ETMDGLFLFIQ----------------SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++   L   +                   L     V+VK S      R++N LL +
Sbjct: 413 DSHQALAAALAADLAARAPADAAGAEGRRLR----VLVKGSRGSAMDRIVNALLAQ 464


>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 465

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 200/464 (43%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+   + G +        +N +  DSR++ P + FF I+G ++DGH+F   A  +GA
Sbjct: 4   TLGDVQHCLTGMAEECREFAVINAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV +         +++PV  V D + AL +LA   R    + ++A+TG+ GKTT KEM
Sbjct: 64  VAVVASRM----PEGVTVPVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKEM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   +S          + NN IG+P+++ +     +  I ELG+S  G++  L  +  P 
Sbjct: 120 LAAVVSRKFTVAKNYRNLNNQIGLPVSMLKADSGQEVWIMELGISVKGDMEELAVIASPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT + P HL     +  +A AK+ + + + + GT  ++ D  + EL  A +   G  
Sbjct: 180 VAVITNVGPGHLEGLGDVAGVARAKSSLLKYMRQDGTAIVSKD--YPELWAAATELTGSP 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +S    ++A           +      ++      E      G H A+N+       +
Sbjct: 238 VGFSTS-DESASCHAVFLGADDDGRGRFRLRTPTGQGEFTAPFCGDHYAENVACVAAAAN 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D  +   +     E   +R+ C    G   +ID++YNANP SM  +I     ++
Sbjct: 297 ALGLPFDDIV---AGVQAVEADCQRFCCRPM-GDALVIDDTYNANPLSMGRSIRTAVAMA 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  + VLGDM E+G+ +Q+ H +L  ++       V+  G H   +   L   +  
Sbjct: 353 KDRP--LVLVLGDMRELGDEAQARHEELGRLIRDVAPRAVFFKGAHCGDVLCGLDGGVDF 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              E         +   +   VV+VK S S         L  E 
Sbjct: 411 TAVEGPGEFLAAWRDMELADAVVLVKGSRSLKMEAFAAALCREL 454


>gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
 gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
          Length = 510

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 131/460 (28%), Positives = 200/460 (43%), Gaps = 30/460 (6%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+ P   V  + IDSR +AP   F A+ G   DGHDF           V      V +  
Sbjct: 22  GVDPAAPVTSVVIDSRQVAPGSLFVALPGERVDGHDFAA-------AAVGAGALAVLAAR 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---- 135
            + +P   V D    L  LA   R R  AT+I +TGS GKTTTK++L   L    +    
Sbjct: 75  PVGVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLLGGHGEAGGP 134

Query: 136 -----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T A IGS+NN IG+PLT+ R   +  F + E+G   +G I  L  L RP + ++ 
Sbjct: 135 GGLGATVAAIGSFNNEIGLPLTMLRAEPETRFVVLEMGARGIGHIATLCALARPQVGLVL 194

Query: 191 TIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +  AH+     G   IA AK E+ E   +   + LN DD     + A+  A     +  
Sbjct: 195 NVGSAHVGEYADGRRGIAVAKGELAEAASE--LVVLNADDPLVASMAARVQASA--KVVL 250

Query: 250 FGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           FG   +AD +  + +  +   +  ++   G+   +    +G H   N L        L  
Sbjct: 251 FGTGASADVRAERIEVDAAGRAAFDLLASGECHRLRLGLVGAHQVANALAAAAAAIGLGL 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               A  AL    P+     R       G   +++++YNANP SM+AA++ L  I    +
Sbjct: 311 APADAAAALERARPRSRW--RMEVTTTPGGVVVLNDAYNANPESMRAALAALLDIRG--D 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHV 424
           GR  AVLG M E+G  +   H +L  +++   +  +   G   L + +A       +   
Sbjct: 367 GRAWAVLGPMGELGAGAAEAHRELGRLVASLGVPRLVAVGPGALGVHEAAREDVAWAGES 426

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +   +D    F+   +  GDVV+VK+S S G   +   L
Sbjct: 427 TWVSGVDEAVAFLGGQVRPGDVVLVKASRSFGLEAVAAGL 466


>gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           kansasii ATCC 12478]
          Length = 524

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 133/507 (26%), Positives = 203/507 (40%), Gaps = 53/507 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T   +   + G    I PQ      V G +  DSR+I P   F A+ G H DGHD+   A
Sbjct: 5   TVAQIADIVGGTLADISPQDAAQRRVTGTVEFDSRAIGPGGLFLALPGAHVDGHDYAASA 64

Query: 61  VQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--- 106
                         G   +VV  +   + G+L+  +    D  GA    A+A   ++   
Sbjct: 65  AAAGAVAVLAARPVGVPAIVVTPERSLAEGALAGVLEHDADGSGAAVLAALAKLAKAVAA 124

Query: 107 -----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  TII ITGS GKT+TK+++   L  +    A  GS+NN +G P T+ R   D D
Sbjct: 125 ELVAGGLTIIGITGSSGKTSTKDLVAAVLQPLGVVVAPPGSFNNELGHPWTVLRAGRDTD 184

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + + ++G
Sbjct: 185 YLILEMSARHPGNIAALAQIATPAIGVVLNVGTAHLGEFGSREAIARTKSELPQAVPQSG 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280
            + LN DD     +   + A     +    +    D            +    V      
Sbjct: 245 VVILNADDPAVAAMAEVTAA----RVVRVSRGSTGDVWAGPVSLDELARPQFTVHAGATQ 300

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            EV     G H   N L    +     A +D    AL    P      R +        T
Sbjct: 301 AEVRLGVYGDHQVSNALCAAAVALECGATLDQVATALGGAGPVS--RHRMQVTTRADGVT 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEG---------RRIAVLGDMCEMGELSQSFHID 391
           +ID++YNANP SM A +  L+ I+  G G         R  AVLG+M E+G  + + H  
Sbjct: 359 VIDDAYNANPDSMGAGLQALAWIARGGSGAGSDLAAKRRSWAVLGEMAELGADAIAEHDR 418

Query: 392 LAEVLSLYNISHVWLSGF--------HVLALKDA-----LPRSIHVHYSETMDGLFLFIQ 438
           +  +    ++S + + G         H   L+ A                  D     ++
Sbjct: 419 VGRLAVRLDVSRLVVVGTGRSVSAMHHGAVLEGAWGSWGAGADRGTVNVADADAALELLR 478

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + +  GDV+++K+SNS G   L + L+
Sbjct: 479 AEVQPGDVILIKASNSAGLGALADALV 505


>gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112]
 gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
          Length = 452

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 213/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S    +++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRVTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TL+D++YNA+  +++AAI  L + 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLDEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G+R+  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A   + 
Sbjct: 347 ----DGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEYPAQ 402

Query: 423 HVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L +       + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLLKVLNEYKSQNTKLTVKGARSFKMEEVVKFVKENL 452


>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
          Length = 415

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 130/426 (30%), Positives = 214/426 (50%), Gaps = 29/426 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I+P   F A+KG +Y+ ++F   A+ KGA  V+++     +  +       V+
Sbjct: 16  VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTDENKM---LLVN 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L AL +LA   R +    IIA+TGS GKTTTKE++ + LS   KT A IG+ NNHIGV
Sbjct: 73  NSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D D  I E+G +H  EI  L  +  P    IT    AHL  F GIE +   
Sbjct: 133 PLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFGGIEGVIKG 192

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQC 266
           K+E++  L+    T F+N DDS  E    K+  +     Y+F    N  A+  + K +  
Sbjct: 193 KSEMYTYLKTHNKTAFVNLDDSIQE---EKTQHINR---YTFSTDNNKKANIIINKIEAN 246

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               +++++  G  +E+  + IG + + N+ + + I +          +A+  + P   R
Sbjct: 247 P---FVKIKYNG--IEIQSNLIGIYNSNNINVAISIGTYFNVSEQDIKQAIENYIPANNR 301

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +       +G   +I ++YNANP+SM AAIS   Q+     G +IA LGDM E+GE S 
Sbjct: 302 SQLIE----KGNNKIILDAYNANPSSMAAAISNFQQLD----GSKIAFLGDMFELGEESL 353

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + E +  +   + +  G +  + K       H+HY  + +      + + ++ + 
Sbjct: 354 TEHKKIIESILNHTSINFYFIGKNFYSSKI---EKEHIHYYTSFEDFVEN-KPNGINNNT 409

Query: 447 VVVKSS 452
           +++K S
Sbjct: 410 ILIKGS 415


>gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 495

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 119/490 (24%), Positives = 196/490 (40%), Gaps = 47/490 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R+++    + A++G   DGHDF   A+ +GA  ++
Sbjct: 9   IAHWAGGELHGD--DAMIDAVGNDTRALSNGSLYVALRGERVDGHDFAADALAQGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V       + +L +P   V +   AL ++A   +      +IA+TGS GKT+ K +L   
Sbjct: 67  VER----LLPTLGVPQVVVQNTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   +      YA  G+ NN IG+PL +   P D D  I+E+G    G+I +LT + RP
Sbjct: 123 LTEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + + HA  +
Sbjct: 183 QVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPSDGVAVINADDAFGAWFEQQLHAQPV 242

Query: 245 --KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +AD + R+ +  ++ +   +       +V     G H   N L   G+
Sbjct: 243 PGRRVLRYGLQASADIRARQLRLQADGAQFTLVTPQGEAQVTLPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+   P  GR   +R     G   L+D+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPIIAAGLAQARPVAGRQIAHRLP---GGAVLVDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G    + H           +  ++  G    A   A     
Sbjct: 356 ALAAAPGDGWLVLGDMRELGAEGAALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGG 415

Query: 423 HVH------YSETMDGLFLFIQSSLVDGD---------------------VVVVKSSNSC 455
            V        +     L     S     +                      ++VK S   
Sbjct: 416 RVFATHAALATALQADLAQVAGSQTQTQESSLMHEHTGAAAQAATAHLPPTLLVKGSRGS 475

Query: 456 GFYRLINLLL 465
              R++  LL
Sbjct: 476 AMDRIVTALL 485


>gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 452

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S     ++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEYSNQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L         + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKENL 452


>gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
          Length = 468

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 108/469 (23%), Positives = 196/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++        + +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I         +  D Q+           + +     ++ V    +G H A+N L   
Sbjct: 239 GNRILDFALHDAERQNDAQVVG---RMHGGELAIDTPAGAVTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  + ++      T++D++YNANP SM+AAI V
Sbjct: 296 AAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAA----HPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFAFGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L   +  +       V+VK S      R+++ L  +
Sbjct: 412 DTAR--HFDDVGALVSALFAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 452

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTKGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S     ++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEYSNQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L         + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKENL 452


>gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
 gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
          Length = 481

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 206/478 (43%), Gaps = 26/478 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  D+L+A     +     G V  +++DSR  A   AF A  G   DG+ F   A+ + 
Sbjct: 4   MSVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARA 63

Query: 65  AGLVV---VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARL-RSKATIIAITGSVG 118
           A +V+          +       +     DD    L +LA A R    + T++ +TGSVG
Sbjct: 64  ATVVLTGPAPKGCAEAAERHGCALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVTGSVG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   L +  + +A  G++NN IG+PLTL       +  + E+GM+H GE+  L
Sbjct: 124 KTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGELSRL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--------FLNYDDS 230
               RP +A+IT +  +H+      E IA AKAEI  G+  + +          L  D+ 
Sbjct: 184 AACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDND 243

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQL-QGKSMEVVHHGI 288
           F  L++ +  A     +   G     D +              E+    G S        
Sbjct: 244 FAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMP 303

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H+  ++L+ + I   L  D   A+  ++          R       G   +ID+SYNA
Sbjct: 304 GRHVVSDVLLAMAICDRLGVDRHDALDRIARM---PQTHMRLEVVTAPGRPRMIDDSYNA 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P+S+ AA+ VL  ++    GRR+AVLG++ E+G+ +   H  +    +   +  + L G
Sbjct: 361 SPSSVAAALDVLCSMA--CTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKPLDLLVLVG 418

Query: 409 FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            H  A               +   + +      I   L + D+V+ K+S + G  R +
Sbjct: 419 THDAAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVLAKASRASGLDRFV 476


>gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 452

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 116/470 (24%), Positives = 218/470 (46%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  A Q     I     +  +SI+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--ATQAGLEYIGEDVSIQTVSINSNEVNQDALFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         ++IP    ++ +  L  LA   R   K  II++TGS GKTT K
Sbjct: 59  GAKALLVSKKQ-----DINIPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L   KK +   G++NN++GVP+T+   P DVDF + E G S  GEI+    +++
Sbjct: 114 EMIVTLLGG-KKVHFTQGNFNNYLGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAEIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++A+IT +  +HL N   ++ +   K E+ + L K G   +N DD   E + A +  L 
Sbjct: 173 PNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGVCIVNLDD---ERIPAYADKLD 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +++AD  +  ++   E   +++++  K        IG H   N ++ +  V
Sbjct: 230 CKKITCSMSNQDADIIILDYQVTPELYDVKIRIFNKEYSYQLPNIGKHNLSNSMLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +  ++        +G   R+         TL+D++YNA+  +++AAI+ L++ 
Sbjct: 290 VAAGLEPNDFLQNTQNIKNYKG---RFSTEKLNDKLTLVDDTYNASAGAVQAAIADLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G+++  +  M E+G+  +++H  + + L+   + +++L G  +++          
Sbjct: 347 ----DGKKVIAITSMRELGDEGENYHRKMGQWLNKAGLDNIFLFGEKNLIKFALEEYEGS 402

Query: 423 HVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +V Y +    L   +   L         + VK + S     ++  + E  
Sbjct: 403 NVKYYDDKKQLNNDLLKVLDGYKSQNTKLTVKGARSFKMEEVVKFVKENL 452


>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
          Length = 456

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/447 (27%), Positives = 198/447 (44%), Gaps = 18/447 (4%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
              + G+ P   V  I  DSR +   E F  + G  +DGH F+  A   G    VV    
Sbjct: 15  GAQAAGVDPAAPVGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGR 74

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +    +  + VDD L A  +LA+  R +  A ++A+TGS GKTTT+E++  AL  + 
Sbjct: 75  AGDVPPGLL-HWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLG 133

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
              A  G+ NN IGVPLTL +   +    + E+GM  LGEI  L+   +P +AVIT I  
Sbjct: 134 PVMASSGNENNDIGVPLTLLKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAVITNIGT 193

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AH+      E IA+AK EI   L+  G + +   D    LL+    A+    +     + 
Sbjct: 194 AHIGRLGSREAIATAKCEITSQLKPDGLLVIPAGDP---LLEQAIQAVWSGRVQRVALAG 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +            +++   + ++G+ +       G H A+N+L+ + +   L   +    
Sbjct: 251 DPGVDQADLLGELDETNDLLSVRGERI--RLPLAGRHNARNLLLAVAVAQELGVGLPALA 308

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                     GR +R +     G   ++DE+YNA+P ++ AA     ++     GRR AV
Sbjct: 309 DLD--VEVPGGRNRRLQL----GGLRVLDETYNASPEAVLAA----LELLARQPGRRFAV 358

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDG 432
           LG M E+GE S + H  +AE  +   +  + +      A   A       ++        
Sbjct: 359 LGSMLELGEQSVALHRQVAERAAALGLDGLVVVAGGAEAQAMAAAAQALPNLAVVAEPAE 418

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               ++  L  GDV+++K+S      R
Sbjct: 419 AAEPLKQWLASGDVLLLKASRGVALER 445


>gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 451

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 207/460 (45%), Gaps = 29/460 (6%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL T  ++     G   G         +S DSR +   E F A++GP++ G DF+  A 
Sbjct: 8   TPL-TAAEIAALCDGVHHGADFTAL--DVSTDSRRLQAGELFIALRGPNFRGEDFLAAAK 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA   +V            +P   V D L AL  LA   R RS+A   AITGS GKT+
Sbjct: 65  GQGAVAAIVAEYQ----PDADLPQIVVADTLAALQALARDRRERSQAQFFAITGSNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE+L   L +  +T A +G+ NN IGVPLTL R+  +  + + E+G +H GEI  L  L
Sbjct: 121 TKEILQRLLQTRGQTLATLGNLNNDIGVPLTLLRLRDEDRYAVIEMGANHPGEIAALVAL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A+IT +APAHL+ F  +E + +AK+EI+      G I LN D       + + H 
Sbjct: 181 ARPDVALITNVAPAHLAGFGTLEGVIAAKSEIYAH--SDGAIVLNLDLPAAARWQDQFH- 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +  Y+F  + +AD         ++ S   +++ G    V    +G H   N L    
Sbjct: 238 --DRPQYTFSLNIDADVTAHDL--AADGSRFVLRVDGSDYPVAWQLVGRHNIMNALAACT 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +           L+     + R    R     G  T+ D++YNANPAS KAAI VL+
Sbjct: 294 AARLAGVSGAQMQATLTGLALHQSRLAAIRV----GAHTIYDDTYNANPASFKAAIDVLA 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                     + + G M E+G    + H D+A   +   IS  W  G  +     A    
Sbjct: 350 AAPQS-----LIIAGAMGELGAEEVALHHDVATYAATRGISAFWSVGDGLAQEYGA---- 400

Query: 422 IHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              H+++T   G  L    +     V++VK S S     +
Sbjct: 401 -DRHFADTASAGAALAAYLADAPATVILVKGSRSARMEGV 439


>gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct]
          Length = 487

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 28  IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 84

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 85  GAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 139

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 140 EMIVTLLGER-KVHFTQGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 199 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 255

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S     ++++  +  +     IG H   N ++ +  V
Sbjct: 256 CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 316 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 372

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A   + 
Sbjct: 373 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEYSNQ 428

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L         + VK + S     ++  + E  
Sbjct: 429 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKENL 478


>gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 452

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGTLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S     ++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEYSNQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L         + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKENL 452


>gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
 gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
          Length = 446

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 206/441 (46%), Gaps = 24/441 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG  +DG+ F   A++KG    +++    A   +  +    VD
Sbjct: 24  ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAEADNDRL--ILVD 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    ++A   R   +  +I ITG+ GKTTTKE+++  L+   +     G++NN +GV
Sbjct: 82  DCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNNDVGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 142 PKTLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNVGRAHLLGFGSFEGVKRT 201

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---- 264
           K E+++ L+   G +FLN        L   +    +  I ++G+S +A+ Q         
Sbjct: 202 KGELYDYLKAHDGLLFLN---ESNADLVEMARQREMNRIMTYGQSDDANVQGEVLDCAPF 258

Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            + + ++    + + ++ +V  H IG +   NML  + I        +    ALS + P 
Sbjct: 259 LRFTWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVTPEQINHALSHYIPA 318

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    A N+    LI ++YNANP+SM AA+     ++      ++A+LGDM E+GE
Sbjct: 319 NNRSQLEVTAKNK----LIVDAYNANPSSMAAAVENFKLMNVEH---KMAILGDMRELGE 371

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +S   H  L + L+      VWL G      + A  +       + +D +   I +   +
Sbjct: 372 VSALEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRK------FKNVDEVKAEIAAHCPE 425

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K SN    + L  LL
Sbjct: 426 NYYILIKGSNGIKLFELPELL 446


>gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia HI2424]
          Length = 468

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/469 (23%), Positives = 196/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++        N +S DSR++   + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDAGVTFNRVSTDSRTVGAGDLFVALKGERFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + ++ +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVDAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I         +  D Q+           + +     ++ V    +G H A+N L   
Sbjct: 239 GNRILDFALHDAERQNDAQVVG---RMHGGELAIDTPAGAVTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  + ++   G  T++D++YNANP SM+AAI V
Sbjct: 296 AAALGAGVALSAIRQGLEAFEPVKGRLQVKQASVGSLGGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAA----HPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L    + +       V+VK S      R+++ L  +
Sbjct: 412 DTAR--HFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
 gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
          Length = 453

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 213/469 (45%), Gaps = 24/469 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA++T +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMVTNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S    +++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEYPTQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467
           +  Y E+ D L   +   L         + VK + S     ++  + + 
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451


>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
 gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
          Length = 426

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 195/440 (44%), Gaps = 26/440 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            ++S+ +   + F A+KG  +DGHDFI  A++ GA  ++     V S       +F V+ 
Sbjct: 10  VLNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSDR-----IFLVES 64

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            +  L KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ N   G+P
Sbjct: 65  SVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLP 124

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   E I   K
Sbjct: 125 LSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETK 184

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +  ++  T    +DD               +    FGK +  D  L+ W      +
Sbjct: 185 MEIIKHSKENATAVTLFDDPDLRR-----EVPCYRKTLFFGK-EGGDSVLKDWWYYEGST 238

Query: 271 WMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             E +       V   G        N+  +L ++  L   VD  I  L+      GR   
Sbjct: 239 IAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPGRFNV 296

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +    ++D++YNA+P + + +I  L +      GRR AV+G M E+GE S+ FH
Sbjct: 297 RE----KKGVLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L E L++  +  V++  F      + +     +  S+  + +   + S + +GDVV+ 
Sbjct: 349 EELGERLNV--LDGVYI--FLSEPEAEWIKSKKIILKSDDPEKIAKDLASRVTEGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEFP 469
           K+S +    +++ +  +E  
Sbjct: 405 KASRAVRIEKVLEMFEKELE 424


>gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
 gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
          Length = 468

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 196/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGAAVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +      L++PV    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 I  F    +A+ Q+            + +     ++ V    +G H A+N L  
Sbjct: 239 G---NPILDFALH-DAERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358
                    ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI 
Sbjct: 295 AAAALAAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMRAAID 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        A 
Sbjct: 355 VLAAQPAP----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAY 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   H+ +    +   + +       V+VK S      R+++ L  +
Sbjct: 411 GATAR-HFGDVGALVAALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
 gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
          Length = 468

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/469 (23%), Positives = 194/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++        + +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHAPAGVAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I         +  D Q            + +     ++ V    +G H A+N L   
Sbjct: 239 GNRILDFALHDAERQNDAQ---IVGRMHGDELAIDTPAGAVTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +    ++      T++D++YNANP SM+AAI V
Sbjct: 296 AAALGAGVALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAA----HPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L    + +       V+VK S      R+++ L  +
Sbjct: 412 DTAR--HFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
 gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
          Length = 459

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 200/464 (43%), Gaps = 22/464 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP +T  +L +A +G             +  D+R       F A+ G  +D HD++  AV
Sbjct: 3   NPTFTGKELAEATRGSWRDGRLPAEAVAVYTDTRVAGEGRLFLALPGEKFDAHDYLAQAV 62

Query: 62  QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
             GAG + +  D    +     +PV  VDD L A  K+A   R R     ++A+TGSVGK
Sbjct: 63  AAGAGGLCIRRDRAEKLPEPCPVPVLEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVGK 122

Query: 120 TTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T+ KE++   L++    +      G+ NN IGVP  L R+     + + E+G +H GEI 
Sbjct: 123 TSVKEIVRAILTAASSPEAVLYTEGNTNNQIGVPQNLLRLNSRHRYAVIEMGTNHHGEIE 182

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+ +  P  +++ +IAP HL     +E +A  K+ IF GL ++G   +  D    E+L+
Sbjct: 183 PLSRMAEPLASLVNSIAPCHLEFLGSLEGVAREKSHIFCGLPESGAAVIPADGPAVEVLE 242

Query: 237 AKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQ 294
             + +     ++ FG+     D   R      E S  E+  + G+   +     G H A+
Sbjct: 243 TAAESY---RVFRFGEDVSRCDAAARYLGGTLEGSRFELSFRTGERFTLEWALTGRHQAR 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N      +   +    +T             R K  R        T ++++YNANP SM+
Sbjct: 300 NAAAAAALAVAIGIPPETIAAGAVHARLPGMRSKVTRL----DGVTYVNDAYNANPGSMR 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA++ L++ +     R + VLG+M E+G    + H  L E             G  +L +
Sbjct: 356 AALANLAEFA--DPARLVLVLGEMRELGGSEAAEHRALVENALQT------FPGVRLLTV 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             A          +  + +   +   + DGD+V  K S      
Sbjct: 408 GRAFGECPGALRFDRSEEVGETLAKLVRDGDLVFAKGSRGIAVE 451


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 204/466 (43%), Gaps = 11/466 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G      +  I  DSRS+    +  FFA+K    DGH++I    +
Sbjct: 3   YTIEKVTTLIGARRYGDN-DTNIGFILTDSRSLCFPEETLFFALKSERNDGHNYIPELYR 61

Query: 63  KGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV N     +          V + L AL +LA   R      I+ ITGS GKT 
Sbjct: 62  RGVKNFVVTNVPKGYASDYPGANFLKVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ IGVPL++  M      G+FE G+S  GE+  L  +
Sbjct: 122 VKEWLYQLLSPSMFVTRSPRSYNSQIGVPLSVWLMNEQTQVGVFEAGISMPGEMLALRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P IAV+T +  AH  NFS +EE    K  +F   E   T+  + DD     + A+   
Sbjct: 182 IQPTIAVLTNLGAAHQENFSSMEEKCREKLILFHDAE---TVIYDGDDEVINKVIAEYPD 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++   K+  A F ++  ++    + +    +G+        I     QN +++  
Sbjct: 239 YKGEKLFWSLKNAEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIPFIDNASVQNAIISAV 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + S L    +   K ++   P      R    + Q   TLI++SYN++  S+  A+  ++
Sbjct: 299 VASKLGLSAEDIDKRMTQLEPVA---MRLEVKVGQHGCTLINDSYNSDINSLDIALDFMN 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +   H   R   +L D+ + G+  ++ + +++++     +      G  +    D +  S
Sbjct: 356 RRPDHRGRRHTLILSDIYQSGQAPEALYKEVSDLARKRGVVKFIGIGPELCKQHDVIQIS 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +    + +   + +SL D +V+++K +   GF +L  LL+++
Sbjct: 416 EKFFFPNVEEFIASEVFASLRD-EVILLKGARQFGFDQLTELLVQK 460


>gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Francisella
           cf. novicida Fx1]
          Length = 453

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 213/469 (45%), Gaps = 24/469 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S    +++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRVTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TL+D++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEYPTQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467
           +  Y E+ D L   +   L         + VK + S     ++  + + 
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451


>gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 417

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 199/461 (43%), Gaps = 48/461 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + ++              +  D+R       F A+ G ++D HD+I  A Q GA
Sbjct: 5   TTSTIAKILK---TDCTTNVEFKDVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V N  +     +  +P   VDD   ALN +A       K  +IAITGS GKTTTK M
Sbjct: 62  VAIVANKPV-----NNQLPTLVVDDTQIALNTIASWHLKNIKPIVIAITGSNGKTTTKNM 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+    T    G+ NNH+GVP+TL  +     + + E+G +HLGEI  L  LV P+
Sbjct: 117 LANILNLQAPTLKTQGNLNNHLGVPMTLLTLEEQHQYAVIEMGANHLGEIAHLCSLVNPN 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T    AH+  F G + +  AK EI+          +N  D+F              
Sbjct: 177 IAIVTNTLDAHIGEFGGFDNLVKAKGEIYSNNSHN---IVNTQDTFTGD----------- 222

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG  K  D    K          ++ +  + + V  + IG H  +N L        
Sbjct: 223 --VSFG--KGGDIFASKLVNNK----FDLNIYKQKISVTLNLIGTHNIENALAASTCAYA 274

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D++   + L V   + GR +      N   F +ID++YNANP S   A+  L   S 
Sbjct: 275 LGIDINLIKQGLEVTKAEHGRLEVI----NTKKFRIIDDTYNANPHSTTTALKALQDFS- 329

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G +I VLG M E+G  S+  H+ + + L+  +    +  G         L +  +  
Sbjct: 330 ---GEKIVVLGAMRELGNDSEELHLKIGQ-LAKKSADTFYSYGK--------LTQHYYGI 377

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + ++   L   + ++      V++K S +     L++LL +
Sbjct: 378 HFDSKQQLANHLLAN-HVHATVLIKGSRTVKMNELVDLLKK 417


>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
          Length = 473

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 195/447 (43%), Gaps = 23/447 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   + F A+ G   DGH ++L A + GA  +VV          L++P   V+
Sbjct: 43  VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVV----EHVETGLNVPQLVVE 98

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIGSYNNH 146
           +   A   +A A R R    + A+ GS GKTTT +M+   L++       +A  G++NN 
Sbjct: 99  NSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIHATEGNFNND 158

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP TL  +       + E GM+H GE+  L   +RP + ++T     H +    + E 
Sbjct: 159 VGVPHTLLGLHCGCRAAVVEAGMNHRGEMARLADWIRPTVVLMTNAQREHQAYLETVAEA 218

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWK 264
           A     +   L   G      DD   ++  + + A G++T  ++  ++   AD +     
Sbjct: 219 AFENGLLIAALPNDGVAVYPADDPCADVWASYALARGVRT-LTYATAEGVAADVRGELV- 276

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  + +   G    +     G H   N +           DVD   + L+ F    
Sbjct: 277 ---PGKGLRLLAYGIDRVIGLQVQGAHNIHNAVGAAAAALAQQIDVDAIAEGLAAFKALP 333

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R         FTLID++YN NP S  A+I++L++  P     RI + GDM E+G  
Sbjct: 334 GRGARMASP---AGFTLIDDAYNCNPDSAIASIAMLAEEKPA----RIFLFGDMGELGRD 386

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443
           ++ +H ++        I + W +G       +A     +   +    D L   +    + 
Sbjct: 387 AELWHAEVGGAAKTLGIDYFWAAGPLSKHAAEAFGIDGVRGRWFADRDELIAHLPELPLK 446

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFPA 470
           G  V VK+S+S GF +++  L + FPA
Sbjct: 447 GATVAVKASHSSGFGKVVETL-KHFPA 472


>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 428

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 197/436 (45%), Gaps = 25/436 (5%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---------GSLSIPVFGVDDVL 92
            F A+ G  +DGHDF+  A+Q G+  VV+  D +            G     ++ V D +
Sbjct: 1   MFLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTV 60

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  +LA   R      ++A+TGS GKTTT+E++   L+ +    A  G+ NN +GVPLT
Sbjct: 61  LAYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNENNDLGVPLT 120

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L R+       + E+GM  LGEI  L+   +P +AVIT I  AH+      E IA AK E
Sbjct: 121 LLRLTDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRLGSREAIAQAKCE 180

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I   L+  G + +   D   +   A      +  I   G    A+     W    + +  
Sbjct: 181 ITTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAE---ADWVGQEDPAAG 237

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            V + G ++       G H A+N+++ L +   L    +         H     G+  R 
Sbjct: 238 SVVVDGVAVP--LPLEGRHHARNLMLALAVARHLGVGPERLQ----QLHVALPGGRSRRL 291

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A+  G   L+DE+YNA+P ++ A++ +L+  +    GRR AVLG M E+G+ S + H  +
Sbjct: 292 AV--GGIRLLDETYNASPEAVLASLELLATQA---GGRRYAVLGTMLELGDKSLALHRRV 346

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           A      ++  + +          A   +    +    + +     +Q  L  GD V++K
Sbjct: 347 ARRAIELDLDGLLIVDGGAEGEAMAAEAAGMSRLALVPSPEAAAAVLQPWLAPGDTVLLK 406

Query: 451 SSNSCGFYRLINLLLE 466
           +S S    RLI LL +
Sbjct: 407 ASRSVALERLIPLLQQ 422


>gi|296394968|ref|YP_003659852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
 gi|296182115|gb|ADG99021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
          Length = 491

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 130/491 (26%), Positives = 202/491 (41%), Gaps = 28/491 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P WT   +  A+ G    +  P+  V   +  DSR + P   F A+ G   DG     
Sbjct: 1   MIP-WTLRQVAAAVGGKLHQVPDPEQLVTAPLEHDSRKVVPGGLFLAVPGERTDGRSHAA 59

Query: 59  HAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KAT 109
            A   GA   +      V T ++ +    + P       L AL  LA A          T
Sbjct: 60  AAHAAGAVATLSSDPLDVPTVVLGAGPYPTGPQESRRLALAALAALAKANAQALVARGLT 119

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ ITGS GKT+TK+++T  L++   T    GS+NN +G P T+ R   D  F + EL  
Sbjct: 120 VVGITGSSGKTSTKDLVTQVLATRGATVGPPGSFNNELGHPWTVLRADQDTRFLVLELAA 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLN 226
             +G I  L  + +P I V+  +  AHL  F   E IA AK E+ E L      G   LN
Sbjct: 180 RTIGHIAELAQIAQPRIGVVLGVGSAHLGVFGSRENIAIAKGELVEALPCADDGGVAVLN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     + +++ A     +  +G +++AD +    +     ++   +        V  
Sbjct: 240 ADDPLVSAMASRTRA----RVVRYGMAESADVRAADVRLDPLSRASFTLITPQGDAPVTL 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A N L    + +          +ALS         +R + A       ++++S
Sbjct: 296 RVHGEHQAHNALAAAAVAAECGLSPAQTAEALSAAQAASP--RRMQVAERADGVVVVNDS 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM+A +  L  ++    G   AVLG M E+G+ S   H  L   +   ++  + 
Sbjct: 354 YNANPESMRAGLRALVGMAHQCGGASWAVLGQMGELGDDSIVLHDQLGRFVVRLSVDRLV 413

Query: 406 LSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           + G      AL          S               + + L   DVV+VK+S S G ++
Sbjct: 414 VVGDSRSAKALHTGAVLEGSWSGEAVLVPDWQSAARLVAAELGPRDVVLVKASQSEGLWQ 473

Query: 460 LINLLLEEFPA 470
           +   LLE  P+
Sbjct: 474 VAEALLEPRPS 484


>gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria AMMD]
 gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia ambifaria AMMD]
          Length = 468

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/468 (24%), Positives = 192/468 (41%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +      L++PV    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F           +         + +     ++ V    +G H A+N L   
Sbjct: 239 G---NPILDFALHDGERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARNALAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                   ++    + L  F P +GR +  +  +      T++D++YNANP SM+AAI V
Sbjct: 296 AAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAAQPAP----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACTAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   H+ +    L   + +       V+VK S      R+++ L  +
Sbjct: 412 DTAR-HFGDVGALLTALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 377

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 186/389 (47%), Gaps = 18/389 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +     +
Sbjct: 3   DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGAA----L 58

Query: 84  PVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           P   V D   AL +L    R       + A+TGS GKTT KEML   L +     A  G+
Sbjct: 59  PQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 118

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 119 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 178

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261
            + I  AK EI EGL   GT  LN +D  F + + ++   G + + +F      AD    
Sbjct: 179 PDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRA---GDRNVLTFALTDSAADVYAS 235

Query: 262 KWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  + +       +     +  V  + +G H   N L        +   ++  +  L+  
Sbjct: 236 ELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNV 295

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P +G   R    +      +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E
Sbjct: 296 QPVKG---RAVAQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGE 348

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           +GE ++  H ++    +   +S ++  G 
Sbjct: 349 LGEWAEQGHREVGAYAAG-KVSALYAVGP 376


>gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
 gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
          Length = 468

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/469 (23%), Positives = 194/469 (41%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++          +S DSR++   + F A+KG  +D HDF+      
Sbjct: 3   MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAQAPAGIALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G+ NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGAHARLATAGNLNNDVGLPLTLLRLAAAHRLAVIELGMNHRGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F    +      +         + +     ++ V    +G H A+N L   
Sbjct: 239 G---NRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  R +       T++D++YNANP SM+AAI V
Sbjct: 296 AAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAAQPAP----RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACAAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L   + ++    D  V+VK S      R+++ L  +
Sbjct: 412 EAAR--HFDDVGTLVDALLAAGYGADASVLVKGSRYMKMERVVDALTNQ 458


>gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
 gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
          Length = 501

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 204/503 (40%), Gaps = 44/503 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG----FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            +   + + + G    +         V G +  DSR++     F A+ G   DGHDF   
Sbjct: 1   MSLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAAT 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIP--VFGVDDVLGALNK------------------LA 99
           AV  GA  V+    +      +       G     G L                      
Sbjct: 61  AVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARLAAAV 120

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A  +    TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R    
Sbjct: 121 AAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLRATES 180

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + E+   H G I  L  +  P I  +  +  AHL  F   E IA+ K+E+ + + +
Sbjct: 181 TDYLVLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSREAIAATKSELPQAVPQ 240

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCS-EQSWMEVQ 275
           +G + LN DD     +  K+ A     +   G+S +A   D +          +    + 
Sbjct: 241 SGVVILNADDPVVAAMADKTAA----RVVRVGRSADARTLDVRADGVTLDPLARPAFTLH 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G+ + V     G H   N L+   +     A +     AL+   P      R + +  
Sbjct: 297 AGGEQVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAAAGPVS--RHRMQVSTR 354

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLA 393
               T+I+++YNANP SM A +  L+ +S       R  AVLG+M E+GE + + H  + 
Sbjct: 355 SDGVTVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMAELGEDTITEHDRIG 414

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +    ++S + + G        L  A+               D     ++  L  GDVV
Sbjct: 415 RLAVRLDVSRLVVVGSGRPMSAMLHGAVMEGSWGSEATPVADADAALALLRDELRPGDVV 474

Query: 448 VVKSSNSCGFYRLINLLL-EEFP 469
           +VK+SNS G   L + L+ E+ P
Sbjct: 475 LVKASNSAGLGALADALVSEQLP 497


>gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium gilvum PYR-GCK]
          Length = 504

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 204/503 (40%), Gaps = 44/503 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG----FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            +   + + + G    +         V G +  DSR++     F A+ G   DGHDF   
Sbjct: 4   MSLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAAT 63

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIP--VFGVDDVLGALNK------------------LA 99
           AV  GA  V+    +      +       G     G L                      
Sbjct: 64  AVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARLAAAV 123

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A  +    TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R    
Sbjct: 124 AAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLRATES 183

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + E+   H G I  L  +  P I  +  +  AHL  F   E IA+ K+E+ + + +
Sbjct: 184 TDYLVLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSREAIAATKSELPQAVPQ 243

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCS-EQSWMEVQ 275
           +G + LN DD     +  K+ A     +   G+S +A   D +          +    + 
Sbjct: 244 SGVVILNADDPVVAAMADKTAA----RVVRVGRSADARTLDVRADGVTLDPLARPAFTLH 299

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G+ + V     G H   N L+   +     A +     AL+   P      R + +  
Sbjct: 300 AGGEQVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAAAGPVS--RHRMQVSTR 357

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLA 393
               T+I+++YNANP SM A +  L+ +S       R  AVLG+M E+GE + + H  + 
Sbjct: 358 SDGVTVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMAELGEDTITEHDRIG 417

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +    ++S + + G        L  A+               D     ++  L  GDVV
Sbjct: 418 RLAVRLDVSRLVVVGSGRPMSAMLHGAVMEGSWGSEATPVADADAALALLRDELRPGDVV 477

Query: 448 VVKSSNSCGFYRLINLLL-EEFP 469
           +VK+SNS G   L + L+ E+ P
Sbjct: 478 LVKASNSAGLGALADALVSEQLP 500


>gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium resistens DSM 45100]
          Length = 516

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 138/495 (27%), Positives = 204/495 (41%), Gaps = 36/495 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +   G  + G  P   V G +  DSR I P   F A+ G   DGHD+  
Sbjct: 13  MIEL-TVGKIAEITGGELVDGADPDTKVLGPVEFDSRRIKPGGIFMALPGAQVDGHDYAA 71

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARL- 104
            A ++           GA  +V  +  +    S +          GA  L  +   AR  
Sbjct: 72  SAAEQGAALLVVGKRVGAPALVAPSVELRQEASNASAFEHDTQGHGAAVLAAIDRLARFN 131

Query: 105 ------RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                     T++ +TGS GKT+TK+++   L     T A  GS+NN IG+P T  R   
Sbjct: 132 TDALVAEHGMTVVGVTGSAGKTSTKDLIGAILREAGPTVAPPGSFNNEIGLPYTALRAEE 191

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + + E+    +G IR LT +  P+I V+  +  AHL  F   + IA AK E+ E L 
Sbjct: 192 GTKYLVSEMSARGVGHIRHLTEVTPPNIGVVLNVGSAHLGEFGSRDAIAQAKGELVEALP 251

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCS-EQSW 271
           + G   LN DD     + A++HA  ++      T    G+    D+     +     ++ 
Sbjct: 252 ENGLAVLNADDDKVAAMAARTHARVVRFSTSQETCEWAGREVAVDYYASDIQLDEVARAR 311

Query: 272 MEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +    G  + V     G H   N L    +            +AL+            
Sbjct: 312 FALHHPYGDPVAVELGVFGAHQVSNALAAAAVGMECGMSATDVARALNGHVAASVNRMDV 371

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFH 389
           R     G  T+I++SYNANP SM+A I  L+  +   +G    AVLG M E+G+ +   H
Sbjct: 372 RTRARDG-VTIINDSYNANPESMRAGIDALAYTASGRDGAESWAVLGQMGELGDDATEAH 430

Query: 390 IDLAEVLSLYNISHVWLS--GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
            DL   LS   I H  +   G +  AL  A     +  H  E  D    F+  SL   DV
Sbjct: 431 ADLGHSLSQRRIRHAVIVGNGVNQQALAHAAREDGVDTHVVEDADAAVNFLDLSLRKSDV 490

Query: 447 VVVKSSNSCGFYRLI 461
           V+VK+S S G + + 
Sbjct: 491 VLVKASYSDGLWAVA 505


>gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
 gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
          Length = 464

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 206/465 (44%), Gaps = 39/465 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    +N ISI+S+ +   + F AI+G    G++F+  A++KGA  V  +  +      
Sbjct: 15  EISDLEINNISINSKELGKNDIFVAIRG----GNNFVNEALEKGAFAVYDSKTLKIDEKY 70

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +   F V+D +  L   A   R      +I ITGS GKTT K+M+   LS   K     
Sbjct: 71  ANRAFF-VNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTE 129

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YNNHIG+P TL R   D  F I E+GMS  GEI  L  +  P I VIT I  +HL   
Sbjct: 130 GNYNNHIGLPFTLLRAEEDDKFIILEMGMSGFGEIDLLGQIALPDINVITNIGESHLEFL 189

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NA 256
              E +  AK EI   ++   T+ +N DD + + +KA+   + +    + G ++     +
Sbjct: 190 KTKENVFLAKTEIIPYIKN--TLVINGDDDYLKNVKAE--NIEVVKALNLGSNEFREKTS 245

Query: 257 DFQLRKWKQCSEQSWMEVQLQGK------SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           DF           +   ++  GK            + +G H   N++M + +      + 
Sbjct: 246 DFYYGDVHFNESGTDFFLKYFGKICQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMED 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +A+         G R++   N G  T I+++YNA+P SM+ ++   SQI  + +  
Sbjct: 306 KIISEAVKNIGLT---GMRFQIIEN-GDTTYINDAYNASPMSMEKSLETFSQI--YNDRL 359

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-------- 422
           +I VLGDM E+GE     H +L   +       ++L G  + +L + +  ++        
Sbjct: 360 KIMVLGDMLELGENELELHSNLFNTIKNTKFDKLYLFGERMKSLFEKIKENVDNENLENE 419

Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                   + +  + +   I+    +   V++K+S       +I 
Sbjct: 420 NLKNKEFGHFDQKEEIKEKIRQISGEK-AVLLKASRGMRLEEIIE 463


>gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
 gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27]
 gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma
           whipplei TW08/27]
 gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
          Length = 464

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 218/470 (46%), Gaps = 27/470 (5%)

Query: 8   HDLLQAIQGHSIGI---VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            D+ +   G             +NG + IDSR+I+  + F A  G  +DGH+F+  A Q 
Sbjct: 6   ADIQRVTGGILHNTSLSESLLPINGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQS 65

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA L +V       +  + +P   V +V  A++ +        R   T+I ITGS GKTT
Sbjct: 66  GASLAIVTR-----VQEIDLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK +L   LS    T A  G+ NN IG P+T++R+     + + E G    G+I  L  +
Sbjct: 121 TKSVLAYVLSKFGNTVATHGNQNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAV+ +   AH+     +E + S KAE+   L +   + LNYDD     L      
Sbjct: 181 AVPDIAVLLSAGHAHVEKSGSLESVCSMKAELARDLPEGSKVLLNYDDPRIARL------ 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +   Y FG  K A F+    +    ++   V  Q  S+EV    IG H   N+L  L 
Sbjct: 235 -SVGNRYYFGTDKRAHFRASHVETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALS 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            + +L  D +   + +S  +P +GR +        G F++I ++YNA+  S+K A+  L 
Sbjct: 294 TLVLLGFDAEVCARYISEVNPIDGRMQYIPL----GDFSIIHDAYNASFESVKCALDSLV 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            +    + RRIAVLG + +MGEL+Q  +  L +     +I+ + +     +  +   L +
Sbjct: 350 VLGSLAK-RRIAVLGRIHDMGELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAK 408

Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + E ++     I      GD+V+ K+SN+  F  L+  +  +
Sbjct: 409 GVPNKEIVWFEDLETAKHEIFDLFSPGDIVLFKASNAENFSSLVESVKHK 458


>gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
 gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
          Length = 438

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 194/444 (43%), Gaps = 30/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG  +DG+ F   A+ KG    +++    A   +  +    VD
Sbjct: 16  ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRL--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA   R R    +I ITG+ GKTTTKE+++  L+         G++NN +GV
Sbjct: 74  DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L     P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193

Query: 210 KAEIFEGLEKTGTIFL----NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK- 264
           K E+++ L+    +      N D      L   +    +  I ++G+S +A+ +      
Sbjct: 194 KGELYDYLKAHDCLLFLNESNAD------LVDMARQREMNRIITYGQSDDANVRGEVIDC 247

Query: 265 -QCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 SW ++     + ++ EV  H IG +   NM   + I        +    AL  +
Sbjct: 248 APFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVTPEQINHALESY 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +    A N+    LI ++YNANP+SM AAI     ++      ++A+LGDM E
Sbjct: 308 VPANNRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVEH---KMAILGDMRE 360

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE+S   H  L + L       VWL G              +      +D +   I + 
Sbjct: 361 LGEVSDLEHQKLVDKLQADGFQEVWLVGEEFG------KTHTNFRKFRNVDEVKAEIAAH 414

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
             +   +++K SN    + L  LL
Sbjct: 415 CPENCYILIKGSNGIKLFELPELL 438


>gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
 gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
          Length = 470

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 119/471 (25%), Positives = 197/471 (41%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ +     L  A+  G ++   P   +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MSVMMDLR-LAHALLPGSTLVGDPATPLLRVHSDTRTLRAGDLFVALKGERFDAHDFLPQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       +    +    V D   AL  L    R R    +IA+TGS GK
Sbjct: 60  AR----AAGAVAAIAEHGLAEAGLAGLHVADSRAALGTLGANWRARMSLPLIAVTGSNGK 115

Query: 120 TTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD----VDFGIFELGMSHLG 173
           TT  +M+   L +      +A  G++NN IGVPLTL R+  D        + ELGM+H+G
Sbjct: 116 TTVTQMIASILRAWVGDAAFATEGNFNNDIGVPLTLLRLRQDADTWHRAAVVELGMNHVG 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L  +  P +A++      H    + +E +A     + E L   GT     DD+   
Sbjct: 176 EIAQLARMAAPTVALVNNAQREHQEFMASVEAVARENGAVIEVLGANGTAVFPSDDAHAA 235

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +A +   G +   +F     +D            + + +     +  +     G+H  
Sbjct: 236 VWQALA---GTRPTLTFSLEGPSDLVAEAVWSGDHWAAV-LHTPAGATAIRLRVAGWHNV 291

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            ++   + L  F P +GR +           TL+D+SYNANP S+
Sbjct: 292 KNALAATACALAAGCPLEAVARGLEAFEPVKGRSQVKALQRGGRAVTLVDDSYNANPDSV 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AAI VL+ +     G R  VLGDM E+G+   +FH ++    +   I  +W +G    A
Sbjct: 352 RAAIDVLATLP----GPRWLVLGDMGEVGDQGPAFHAEVGRYAAACGIDALWTAGAASAA 407

Query: 414 LKDALPRSIHVHYSETMDGLFLFI---QSSLVDGDVVVVKSSNSCGFYRLI 461
              A   +   H   ++  L   +     +  +   +VVK S      ++I
Sbjct: 408 AAAAFGPAARAH--ASVAELIAALGPDTHAAPEAASIVVKGSRFMKMEQVI 456


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 109/462 (23%), Positives = 200/462 (43%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++   +    IG  P   ++ I  DSRS+    +  FFA+K    DGH +I    ++
Sbjct: 4   TIEEITSVMGAERIGNAP-ARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV+         +      V + L AL +L    R + +  ++ ITGS GKT  K
Sbjct: 63  GVRNFVVSDLPENGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  +    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPERIITRSPRSYNSQIGVPLSVWLLNEHTELGIFEAGISEMGEMEALRPIIQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NF+ +++    K ++F   +    I  N D+       AKS    
Sbjct: 183 PTIGVLTNIGGAHQENFTSLQDKCMEKLQLF---KDCDVIIYNGDNELISSCVAKSLFTA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S   ++   F +    +    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSMKDTERPLF-IESISKDETGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + +    P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVSPEVIAERMLRLEPVA---MRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     +R  +L D+ E G++S+  +  +A+++    +  +   G  + A        I 
Sbjct: 356 TEDKGRKRTLILSDILESGQVSKLLYRQVADLVHSRGVDRIIGVGEEISAYASRF--EIE 413

Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  + + L    + S L   +VV++K +    F  + ++L
Sbjct: 414 KQFFRSTNELLASGVLSGLR-NEVVLIKGARVFHFDDITDVL 454


>gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 455

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 213/463 (46%), Gaps = 18/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TFH++ Q +           F   + +DSR +   + F A+ G   DGH F+    +KGA
Sbjct: 7   TFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKGA 66

Query: 66  GLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +V+ D    +  +  +P+ GVDDVL AL KLA     + +  I+AITGSVGKTTTK 
Sbjct: 67  AAAIVSNDFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTTTKH 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVR 183
           +L   L          G+ N+ IG+PL++        D  I E+GM+  G I+ L  +  
Sbjct: 127 LLFQLLQKHFSVAFSPGNQNSQIGLPLSILNHYHGHEDVLILEMGMTAQGHIQKLIEIAP 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T +   H++    +E IA AK EI     KT    +  +  F+ LL    H  G
Sbjct: 187 PDIAIVTALELVHVAGVHSLENIAHAKREILTH-PKTMLGLIPSEIPFYALL----HETG 241

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                SF   S  AD+ LR+  Q  +   +        +      +G H   N L  +  
Sbjct: 242 TCRKQSFSTLSIQADYCLREQDQHLQ---IRDSQGLSPLLPRLPFLGKHNQHNFLAAISA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L        + +      E   +R    + +G    I++SYNA   S+KAA+  L  
Sbjct: 299 CRALGMTWSDIQQVIPTLTLPE---RRLEQVIKKG-ILFINDSYNAALTSVKAALDALPP 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G+RI V+G+M E+G  S++ H ++  +LSL  +  +   G   L +++   +  
Sbjct: 355 -PLQFSGKRIGVIGEMVELGTFSEACHREVG-ILSLAKLDLMICYGDGCLPIEEVWKKHN 412

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             VH + T + +   ++  ++ GDVV++K SN    ++++   
Sbjct: 413 KPVHLTLTFEQVIAELKQHVLPGDVVLLKGSNKKQLWKVLEYF 455


>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
 gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
          Length = 426

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 194/440 (44%), Gaps = 26/440 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            ++S+ +   + F A+KG  +DGHDFI  A++ GA  ++     V S       +F V+ 
Sbjct: 10  VLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSDR-----IFLVES 64

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            +  L KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ N   G+P
Sbjct: 65  SVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLP 124

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   E I   K
Sbjct: 125 LSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETK 184

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +  ++       +DD               +    FGK +  D  L+ W      +
Sbjct: 185 MEIIKHSKENAIAVTLFDDPDLRK-----EVPRYRNTLFFGK-EGGDSVLKDWWYYEGST 238

Query: 271 WMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             E +       V   G        N+  +L ++  L   VD  I  L+      GR   
Sbjct: 239 IAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRTLGETVD--IFDLASLKTVPGRFNV 296

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +    ++D++YNA+P + + +I  L +      G++ AV+G M E+GE S+ FH
Sbjct: 297 RE----KKGVLIVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L E L++ +  +V+LS      +K        +  S+  + +   + + +  GDVV+ 
Sbjct: 349 EELGERLNVLDGVYVFLSEPEAEWIK----SKKIILKSDDPEKIAKDLATRVKKGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEFP 469
           K+S +    R++ +  +E  
Sbjct: 405 KASRAVRIERVLEMFEKELE 424


>gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
 gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
          Length = 468

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 107/469 (22%), Positives = 192/469 (40%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G ++          +S DSR++   + F A+KG  +D HDF+      
Sbjct: 3   MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   +++P+    +   +L  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAQAPAGVALPMIVGGETRASLGALAHGWRKRFALPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F    +      +         + +     ++ V    +G H A+N L   
Sbjct: 239 G---NRILDFALHDDERQTAAQVAGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                    +    + L  F P +GR +  R +       T++D++YNANP SM+AAI V
Sbjct: 296 AAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAAQPAP----RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACAAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    + + +  L   + ++       V+VK S      R+++ L  +
Sbjct: 412 EAAR--HFDDVGTLVDALLAAGYGAEASVLVKGSRYMKMERVVDALTNQ 458


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRSFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIVYDGDNELISSCVAKS-LFA 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I    K       +   ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 239 SREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVPPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score =  296 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIVYDGDNELISSCVAKS-LFA 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I    K       +   ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 239 SREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVPPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
 gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
          Length = 438

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 196/444 (44%), Gaps = 30/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +SR+      F A+KG  +DG+ F   A+ KG    +++    A   +  +    VD
Sbjct: 16  ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRL--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA   R R    +I ITG+ GKTTTKE+++  L+         G++NN +GV
Sbjct: 74  DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L     P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193

Query: 210 KAEIFEGLEKTGTIFL----NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK- 264
           K E+++ L+    +      N D      L   +    +  I ++G+S +A+ +      
Sbjct: 194 KGELYDYLKAHDCLLFLNESNAD------LVDMACQREMNRIITYGQSDDANVRGEVIDC 247

Query: 265 -QCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 SW ++     + ++ EV  H IG +   NML  + I        +    AL  +
Sbjct: 248 APFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVTPEQINHALESY 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P   R +    A N+    LI ++YNANP+SM AAI     ++      ++A+LGDM E
Sbjct: 308 VPANNRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVEH---KMAILGDMRE 360

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +GE+S+  H  L + L       VWL G              +      +D +   I + 
Sbjct: 361 LGEVSELEHQKLVDKLQADGFQEVWLVGEEFG------KTHTNFRKFRNVDEVKAEIAAH 414

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
             +   +++K SN    Y L  LL
Sbjct: 415 CPENCYILIKGSNGIKLYELPELL 438


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 105/462 (22%), Positives = 193/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGDR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIIYDGDNELISSCVAKSLFTS 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       +   ++ +  + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWS-KKDNERPLFIESIQKGAHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVSPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+  +  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
          Length = 426

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 199/440 (45%), Gaps = 26/440 (5%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            ++S+ +   + F A+KG  +DGHDFI  A++ GA  V+     V S       +F V+ 
Sbjct: 10  VLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR-----IFLVES 64

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            + AL KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ N   G+P
Sbjct: 65  SVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLP 124

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++       +  I E+  S  G+I  L  +  P IAV+  +  AHL  F   E I   K
Sbjct: 125 LSILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNAHLEFFGTRERIMETK 184

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +  ++  T    +DDS              +    FGK ++ D  L+ W      +
Sbjct: 185 MEIIKYSKENATAVTFFDDSDLRR-----EVPRYRKTLFFGK-ESGDSVLKGWWYYEGST 238

Query: 271 WMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             E +       V   G        N+  +L ++  L   VD  I  L+      GR   
Sbjct: 239 IAEFEAFESLFTVKLSGYWNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPGRFNV 296

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +    ++D++YNA+P + + +I  L +      G++ AV+G M E+GE S+ FH
Sbjct: 297 RE----KEGVLIVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGERSKEFH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +L + L++ +  +V+LS      +K        +  S+  + +   + + + +GDVV+ 
Sbjct: 349 EELGKRLNVLDGVYVFLSEPEAEWIK----SEKIILKSDDPEDIAKDLAARVTEGDVVLF 404

Query: 450 KSSNSCGFYRLINLLLEEFP 469
           K+S +    R++ +  +E  
Sbjct: 405 KASRAVRIERVLEMFEKELE 424


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIVYDGDNELISSCVAKS-LFA 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I    K       +   ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 239 SREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVPPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
 gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
          Length = 459

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 196/468 (41%), Gaps = 24/468 (5%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   LL A          P   V  +  DSR +   + F  + G  +DGH F+    +  
Sbjct: 4   TLRQLLAAWGTPQGSSFEPDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLDKLTEHK 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+        S  +  + VDD L A  +LA+  R      ++A+TGS GKTTT+E
Sbjct: 64  VQAAVVSRSWTEPFPSGLL-HWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRE 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  AL+ +    A   + NN +GVPLT+          + E+GM   GEI  L+    P
Sbjct: 123 LIRAALAPMGAIQASEANNNNDVGVPLTVLGATAADAALVIEMGMRGSGEIERLSRCTEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+      E IA+AK EI  GL   GT+ +   D   E   A   +  +
Sbjct: 183 DLAVITNIGTAHIGCLGSREAIAAAKCEITAGLHPKGTVVIPAGDPLLESALAAVWSGRV 242

Query: 245 KTI------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +             NAD+             + +        +     G H A+N+L+
Sbjct: 243 LRVRLADDPVVESDLINADWIGADLVGDINGDQLLIDAD----RLPLQLEGRHNARNLLL 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L                  GR +R +    QG  TL+DE+YNA+P ++ AA  
Sbjct: 299 AVAVADQLGVSRKQLQ--GMQVTVPGGRNRRLQ----QGGLTLLDETYNASPEAVLAA-- 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416
              ++     GRR AVLG M E+GE S   H ++A       +  + L   G    A+ +
Sbjct: 351 --LELLAAQPGRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 H+      +   + + + L  GDV+++K+S      RLI LL
Sbjct: 409 VAAPLPHLQLVSNPEDAAVPLAAWLNSGDVLLLKASRGVALERLIPLL 456


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 107/462 (23%), Positives = 193/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV    V            + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPVDLQSFQDANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIVYDGDNELISSCVAKS-LFA 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I    K       +   ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 239 SREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVPPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 193/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGDR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIIYDGDNELISSCVAKSLFTS 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       +   ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWS-KKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVSPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S   E +R  +L DM E G+  +  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKEKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
 gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
          Length = 489

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 41/492 (8%)

Query: 1   MNPLWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           MN L T       +++      +       +  +  D+RS+   + F A++G  +D HDF
Sbjct: 1   MNTLMTLEHAHALIVRRQPAARLVGDGCQPIARVHSDTRSLRAGDLFVALRGERFDAHDF 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A         V       + +  +P   V D L AL  LA   R      +IA+TGS
Sbjct: 61  LPQAQ----AAGAVAAIAERGLDASGMPGIEVPDSLLALQALAAGWRAEHLLPVIAVTGS 116

Query: 117 VGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTT  +M+   L +      +A  G++NNHIGVPLTL  +       + ELGM+H GE
Sbjct: 117 NGKTTVTQMIAAILRAWLGDAAHATAGNFNNHIGVPLTLLALHAGHRAAVVELGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L   G      DD +  +
Sbjct: 177 IAELARIAQPTVALVNNAQREHQEFMQTVEAVARENGCVISALPADGVAVFPADDDYTPI 236

Query: 235 LKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +  +     + + +F  ++    AD   +      +           S+++     G H
Sbjct: 237 WRELAQP---RRVLTFALAEAGVAADCVAQA-SWAGDHWQARFDTPAGSIDLALGVAGRH 292

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L            +D   + L+ F   +GR +           TL+D+SYNANP 
Sbjct: 293 NVKNALAACACALAAGCPLDAVQRGLAGFAAVKGRSQVSLLDWGGRQVTLVDDSYNANPD 352

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S++AAI VL+ +       R  +LGDM E+G+   +FH ++  + +   I H W +G   
Sbjct: 353 SVRAAIEVLAALPAP----RWLLLGDMGEVGDQGPAFHAEVGTLAAQRGIDHFWTAGVLC 408

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQS-----------------SLVDGDVVVVKSSNS 454
                A   ++H  +  T   L     S                 +L     V+VK S  
Sbjct: 409 ADAARAYADAVHASHDAT---LVAHHVSYHGDTAALLQAIAAAGVALPPAASVLVKGSRF 465

Query: 455 CGFYRLINLLLE 466
               + +  L E
Sbjct: 466 MAMEKAVAALRE 477


>gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
 gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
          Length = 485

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 134/456 (29%), Positives = 210/456 (46%), Gaps = 25/456 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV- 88
           +  DSR + P   F A+ G H DGHD+   AV  GA LV+   ++  + G L   V    
Sbjct: 34  VVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVLGARELTGADGRLLPVVVVPD 93

Query: 89  ------DDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 D     L +L  A+         ++ ITGSVGKTTTK++L     S   T A +
Sbjct: 94  VERALGDLAREVLVRLRAASLEPGGPGLRVVGITGSVGKTTTKDLLAQLCGSAGPTVAPV 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            S+NN IG+PLT+ R      F + E+G S  G + +LT +  P +AV+  +  AHL  F
Sbjct: 154 RSFNNEIGLPLTVLRADESTRFLVLEMGASGPGHLTYLTDIAPPDVAVVLVVGHAHLGGF 213

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            GIE +A+AK+EI +GL   G   LN DD     ++A +       + +FG S  A  + 
Sbjct: 214 GGIEAVATAKSEIVQGLLPDGVAVLNADDPRVLAMRALAPG----DVVTFGASTGAQVRA 269

Query: 261 RKWKQC-SEQSWMEVQLQG----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                  S ++   ++ +     +++ V    +G H   N L        +   +D    
Sbjct: 270 HDVVVDRSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNALAAAATGLAVGLTLDEVAV 329

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L           R          T+ID+SYNANP SM+AA+     +    + R +AVL
Sbjct: 330 GLGAADALSPH--RMHVVERPDGVTVIDDSYNANPDSMRAALKA-LAVLAGRDRRSVAVL 386

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMD 431
           G+M E+G+ ++  H  +  ++   N+    + G    A++D           V  ++ ++
Sbjct: 387 GEMLELGDEAREAHDAIGRLVVRLNVGLTVVVGEGARAIRDGANHEGSWGDEVVLADDLE 446

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               F+   L  GDVV+VKSS   G ++L +LL+ E
Sbjct: 447 TAARFLDEELRPGDVVLVKSSYGAGLWQLGDLLVGE 482


>gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
 gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
          Length = 452

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 214/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     +++  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----GLDIPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S    +++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TL+D++YNA+  +++AAI  L + 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLDEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G+R+  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A   + 
Sbjct: 347 ----DGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEYPAQ 402

Query: 423 HVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L +       + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLLKVLNEYKSQNTKLTVKGARSFKMEEVVKFVKENL 452


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 105/462 (22%), Positives = 192/462 (41%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGDR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F   +    I  + D+       AKS    
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLF---KDCDVIIYDGDNELISSCVAKSLFTS 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       +   ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWS-KKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   + ++          R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 299 LYMMVSPEQITERMARLEQIA---MRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+  +  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARF--EIE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            ++  T + L    + + L   +V++VK S +  F R+ + L
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRL 454


>gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 424

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 202/440 (45%), Gaps = 30/440 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG+  D+RS+   + + ++KG +++G+ F   A++ GA L V++        +       
Sbjct: 14  NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYT-----VL 68

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II +TGS GKTTTKE++   LS    T A  G+ NNHI
Sbjct: 69  VDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKGNLNNHI 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    + GI E+G +H GEI  L  + +P+   IT    AHL  F G E + 
Sbjct: 129 GVPLTLLSMDSTTEIGIVEMGANHQGEIAMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188

Query: 208 SAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++  L       F+N  D        +       T+ +FG ++       K+   
Sbjct: 189 KGKSELYNYLRDNEEMAFINDTDKL------QVEKATGITLQTFGSTE------SKYPIS 236

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  ++L  K+  +    IG +   N+ + + + +     +D     +  + P   R
Sbjct: 237 LVDGSESLKLSFKNTTINSQLIGIYNYSNIAVAIAMGTYFDVSIDQIKSGIEEYIPANNR 296

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +    +  + +I ++YNANP SM AA+  L   +       IA +G+M E+G  S+
Sbjct: 297 SQIIK----KDSYRIILDAYNANPTSMAAALENLKATNTT----TIAFIGNMFEVGVTSK 348

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + ++    +I  V+  G        ++P+ ++    E  +       S + +G  
Sbjct: 349 AEHQAMLDLAHHLSIDQVYAIGPDF---CTSVPQ-VNQEVYEDYNAFAKAYSSKIPNGAT 404

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           V++K S      R++NLL  
Sbjct: 405 VLIKGSRGMKMERILNLLEN 424


>gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase
           D-alanyl-D-alanine-adding enzyme;
           D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 459

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 24/467 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++   +L       +   P       IS  S+ I     F  ++G   DGH++I  A++ 
Sbjct: 7   YSLSTILSLFSLKPVWENPMNPKFFWISTSSKEIQKNTLFVPLRGER-DGHEYIADALKA 65

Query: 64  GAGLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA   +   +                 V D L AL  LA   R R    +IAITGS GKT
Sbjct: 66  GATGFLCEKNHPILKNLSNEDQKKAIFVKDTLIALGTLANFHRNRFCPIVIAITGSSGKT 125

Query: 121 TTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TK++L    S +          +YNN IGVP TL R+       I E+GM+H GEI  L
Sbjct: 126 STKDLLGGLFSFLGSKSLVVTEKNYNNEIGVPFTLFRITERTQVVICEMGMNHRGEINRL 185

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P  A+IT I  AH+ N    E IA  K +I  GL   G +F+  D  F    K +
Sbjct: 186 SKMAEPTHALITNIGSAHIENLKSRENIAEEKIDIINGLRPNGVLFVPDDLDFLGRAKQR 245

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    +        SKN + ++   ++        ++ + + ++   +  G  +  N+  
Sbjct: 246 TKKSNVNLKIW-KHSKNPELKVNIVQKNG----FLLEWRMEKIQW--NIPGSKLLSNVRG 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + +          K +  +          R  + +GF+T+ID+SYNANP SM ++I 
Sbjct: 299 MIAVGNFFQIPDVEMKKTIRTYKSPN-----KRLNIKKGFYTIIDDSYNANPESMLSSID 353

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               I        + VLG M E+G+ S+ +H ++ + L  Y    +   G   L +   +
Sbjct: 354 A--SIQYAQNKPIVWVLGTMKELGKFSKFYHEEIGKNLKKYPKGTLLGFGDDTLPMVKQV 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               H    ++   L  FI+  +    V++VK S S     +++ L+
Sbjct: 412 SNGKH---FQSKVDLVEFIKKEIPKQAVILVKGSRSMKMEEIVSELV 455


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/472 (23%), Positives = 202/472 (42%), Gaps = 19/472 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  D+ + I    IG  P   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YTIEDIARIIGARRIGDTPAA-IDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIRDLYT 61

Query: 63  KGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +G    VV+ + +  + + +       +  V + L AL KLA   R R +  +I ITGS 
Sbjct: 62  RGVRNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I E G+S  GE+R 
Sbjct: 122 GKTIVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNGQTELAILEAGISEPGEMRA 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F      
Sbjct: 182 LQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEFINNCVG 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           KS  L  + I    K       + K ++  + + +  +            I     +N L
Sbjct: 239 KSM-LSAREIAWSRKDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPFIDDASIENSL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L    +   + ++   P      R      +    LI++SYN++  S+  A+
Sbjct: 298 NCLAACLYLMLPAEQITERMAKLEPIA---MRLEVKEGKNGCLLINDSYNSDLGSLDIAL 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L + S     +R  +L D+ E G+ + + +  +A++++   I  +   G  + +    
Sbjct: 355 DFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERIIGVGSEISSCAAR 414

Query: 418 LPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
              +I   +      L   I +  L  + +++++K +   GF  L  +L ++
Sbjct: 415 F--NIEKAFYPDTAALTEAIGKGELRLENEIILIKGARKFGFDELTEVLEKK 464


>gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9605]
 gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9605]
          Length = 449

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 201/462 (43%), Gaps = 22/462 (4%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L+        G + P   +  +  DSR +   + F  + G  +DGH F+    +  
Sbjct: 4   TLRQLMDVWGTTQGGRLEPDALLGRVCTDSRQLQAGDFFVPLVGERFDGHHFLEQLPEHK 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   VV+      +    +  + VDD L A  +LA+  R      ++A+TGS GKTTT+E
Sbjct: 64  AQAAVVSRCWAEPLPPDLL-HWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRE 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  AL+ +    A  G+ NN +GVPLT+          + E+GM  LGEI  L++   P
Sbjct: 123 LIRAALAPLGAIQASEGNNNNDVGVPLTVLGATAADAALVIEMGMRGLGEIERLSYCTEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AH+      E IA+AK EI  GL   GT+ +   D    LL++   A+  
Sbjct: 183 DLAVITNIGTAHIGRLGSREAIAAAKCEITAGLHPQGTVVIPAGDP---LLESALSAVWS 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +     + + + +            + +        +     G H A+N+L+ + +  
Sbjct: 240 GRVLRVRLADDPEVE-SDLVGDINGDQLLIDAD----RLPLQLEGRHNARNLLLAVAVAD 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        +AL         G+  R    QG  TL+DE+YNA+P ++ AA      + 
Sbjct: 295 QLGVS----RRALQAIQVTVPGGRNRRLQ--QGGLTLLDETYNASPEAVLAA----LDLL 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSI 422
               GRR AVLG M E+G+ S   H ++A       +  + L   G    A+ +      
Sbjct: 345 AAQPGRRFAVLGTMLELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAASLP 404

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H+      +     + + L  GD +++K+S      RL+ LL
Sbjct: 405 HLQLVSNPEDAAAPLAAWLEAGDFLLLKASRGVALERLMPLL 446


>gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
 gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
          Length = 510

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 121/501 (24%), Positives = 195/501 (38%), Gaps = 44/501 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +   I            V+ +  D+R I P   F A++G   DGHDF   A
Sbjct: 1   MIAL-TLAQIADEIGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDFAATA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITG 115
              GA  V+ +  + A +  L +P        +D +         A        ++ +TG
Sbjct: 60  AAAGAVAVLGSAPVSAPLPLLQVPDRPDNAGVLDALAALARASVTALVREHGLQVVGVTG 119

Query: 116 SVGKTTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           S GKT+TK+++   L ++     ++  A   S+NN +G P T  R      F + EL   
Sbjct: 120 SSGKTSTKDLIAAVLRAVPGTGPERVIAPPESFNNELGHPYTALRADESTAFLVLELSAR 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTI 223
             G I  L  +    I  +  +  AHL  F  +E IA AK+E+ + L          G  
Sbjct: 180 GAGHIAALARVAPLRIGAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQPLTGGVA 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSME 282
            LN DD+    +   + A     +   G    A  +     +  ++++   +     S  
Sbjct: 240 ILNADDALVAAMAELTAA----EVVMVGTGAAAQVRATDVGQDDADRARFTLVTPEGSAP 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G H   N L    +   +        +ALS    +     R          TLI
Sbjct: 296 VTLRVVGAHQIGNALTAAAVGRAVGLGPQAIARALS--QAEPASRWRMEVTELANGVTLI 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +++YNANP SMKAA+  LS I      R  AVLG+M E+G+ + + H  +  ++    + 
Sbjct: 354 NDAYNANPHSMKAALHSLSTI--GRGRRTWAVLGEMAELGDEATAAHDQIGRLVVRLGVD 411

Query: 403 HVWLS-----GFHVLALKDALPRSIHV------------HYSETMDGLFLFIQSSLVDGD 445
            + +                 PR++H+                 +D     +   L  GD
Sbjct: 412 RLLVVEGPGAATGAAVGGRTAPRALHLGAHLEGSWGGESELVPDVDDAVAILLDELEPGD 471

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           VV+VK+S S G  R+   L+E
Sbjct: 472 VVLVKASRSAGLERVALRLIE 492


>gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
 gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
          Length = 468

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + I G  +   P      +S DSR+  P + F A+KG  +D HDF+      
Sbjct: 3   MLSLGEAARLIPGAVVHGDPATTFERVSTDSRTAGPGDLFVALKGERFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +      L++PV    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSAAHRLAVIELGMNHPGETDVLAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F           +         + +     ++ V    +G H A+N L   
Sbjct: 239 G---NRILDFALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNALAAT 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359
                   ++    + L  F P +GR +  R  +      T++D++YNANP SM+AAI V
Sbjct: 296 AAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRAAIDV 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +      R+ V+GDM E+G+   +FH ++        I  ++  G        A  
Sbjct: 356 LAAQAAP----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACAAYG 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   H+ +    L   + +       V+VK S      R+++ L  +
Sbjct: 412 DTAR-HFGDVGALLTALLAAGYGAHATVLVKGSRYMKMERVVDALTNQ 458


>gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 203/437 (46%), Gaps = 24/437 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +S DSR       FFA+KG   DG+ F   A+ KGA   V++                V
Sbjct: 20  QVSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDNPRYYQEDER---YLLV 76

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L +LA   R +    IIAITGS GKTTTKE++   LS     YA  G++NNHIG
Sbjct: 77  NDTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGNFNNHIG 136

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP++L  +    +  + E+G +H+GEI  L  +V+P   +IT I+ AHL  F GI  +  
Sbjct: 137 VPISLLSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNISHAHLEGFGGINGVIK 196

Query: 209 AKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K+E++  L+   G  F+N  DS    +        +  IY     +  D+   + K   
Sbjct: 197 GKSELYTYLKQHGGVPFINSADSVLLNVA----NGFVNPIYY---PQKGDYYYCELK--- 246

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E +   V    +S  V    IG H   N+   L I      + +    A+  ++P   R 
Sbjct: 247 EANPYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMVNTAIQAYNPSNNRT 306

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +    +G  +++ ++YNANPAS++AA+   S +       ++ +L DM E+GE S +
Sbjct: 307 QLIK----KGTNSILLDAYNANPASVQAALESFSFLKSMY---KVLILADMNELGEESLA 359

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           FH  + E  +  +   + L G  +       P++I   Y + +  L  ++ +        
Sbjct: 360 FHQAIIEKTAQQDYDAILLHGPVMEKACLYNPKAI---YFKQISNLQEYLSNHKFSNTAF 416

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S S     L+N +
Sbjct: 417 LLKGSRSYHLESLLNFI 433


>gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 452

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F  I     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----GLDIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S     ++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  ++L    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLLDYVLAEYSNQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L       + + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSIKLTVKGARSFKMEEVVKFVKENL 452


>gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 948

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 227/446 (50%), Gaps = 9/446 (2%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I     +   SI+S++I   + FFAIKG + DG+ ++  A Q GA LV+ N    +    
Sbjct: 504 INSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQKKSKKK- 562

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                  VDD L  L + +   R    + II+ITGS GKT+ KE+L   LS I       
Sbjct: 563 -----IVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSP 617

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            S+NN  GVPL+L  +  + +FGIFE+GM   GEI +L+ +++P + VIT I+ AH+ NF
Sbjct: 618 KSFNNKFGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNF 677

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ 259
             I ++A AK+EI   ++  G + LN DD F+  L  K        I++F  K+K+A+  
Sbjct: 678 KNIHQVALAKSEIINNIKTNGILVLNQDDRFY-NLHKKIAKKKNINIFTFSLKNKSANIY 736

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           L K  +   +  + V +  K +      I  +  +N+L T+ I+SI              
Sbjct: 737 LEKIVKEKSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLD 796

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           +   +GRG   +  LN+    ++DESYN+NP S+K+AI    ++      ++  +L DM 
Sbjct: 797 YEIAKGRGDIIKVKLNKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKKK-LILSDML 855

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G  S+  H++  + ++  ++ ++ + G H+L     L +       +    +   I++
Sbjct: 856 ELGNYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKN 915

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            L + D +++K SNS G   L+N L 
Sbjct: 916 DLNNNDYLMIKGSNSTGLNNLVNKLK 941



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 169/454 (37%), Gaps = 50/454 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S +S        FFAI+G   DG  FI HA++KGA +++  ++         +     
Sbjct: 21  GLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVII--SEQKFEGIKNKVLFLRS 78

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN---- 144
            +V   L++L+   +      +IA+TG+ GK++  +     L+   K  A IG+      
Sbjct: 79  KNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLNLGNKKVASIGTLGVKTK 138

Query: 145 -----------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      + I +   L  +    +D  I E     L + R     ++ +  + T +
Sbjct: 139 NSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSHGLKQNRL--DGLKFNTTIFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +  HL       +   +K  +FE  L+  GTI  +     ++ LK  S    +       
Sbjct: 197 SHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYKNLKRISLNNKLDLQALSK 256

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +   D    +++   ++  +E++   K  ++  + IG    +N+ M +          D
Sbjct: 257 SNNGIDIYSHQFR--DDKQIVEIKYNQKHYKLQINLIGKIQLKNLFMAMLAAKKSNLKFD 314

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +K  S      GR ++     N     L    Y   P ++K  ++ L +       R 
Sbjct: 315 QIVKLASKVKSVIGRFEKIGTLKNNSKVIL---DYAHTPDALKTCLTNLKE--QFENKRI 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             V G     G   +     + ++ + Y    V+L+  +     D  P+ I +   +T+D
Sbjct: 370 FIVFGC---GGNRDKDKRPIMGKIANQY-CDRVYLTDDNPR---DENPKKIRLAIKKTID 422

Query: 432 ------------GLFLFIQSSLVDGDVVVV--KS 451
                        +   I   L  GD++V+  K 
Sbjct: 423 KSKVFEISSRSKAIHKAILD-LKTGDILVIAGKG 455


>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 498

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 126/490 (25%), Positives = 206/490 (42%), Gaps = 38/490 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + +QG   G           +DSR +AP + FFA+ G   DGHDF+  A+  GA 
Sbjct: 6   LSRLAEWMQGRVEGDGTARISGTAVVDSRKVAPGDVFFALPGEKVDGHDFVPAALAAGAA 65

Query: 67  LVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
             VV         +L  P   +  V+D L AL   A   R +    +IA+TGS GKT+TK
Sbjct: 66  CAVVRRIDDGWTAALR-PGQGLIVVNDGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L  A+ + +      G++NN IG+PLTL  +       I E+GM   G+I  L  + R
Sbjct: 125 DLLAAAVGAQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALIVEMGMRGKGQIAALCRIAR 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHA 241
           P + ++T I P H+     +E IA AK E+ + L   G   +N +D     E L ++   
Sbjct: 185 PDVGLLTNIGPVHMELLGSMEAIARAKGELLQSLSDKGKAVVNGEDRQVVAETLSSRCPV 244

Query: 242 LGIKT--------IYSFGKSKNADFQ---LRKWKQCSEQSW-----MEVQLQGK------ 279
           +   T        + + G +  A  Q     + +   EQ       + V +  +      
Sbjct: 245 VYAGTSPEALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYEE 304

Query: 280 -SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + E +    G H   N L+ L     +  D   A   L+          R+        
Sbjct: 305 STFEFLLPLPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSL---RWETRRFDCA 361

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            TLI+++YNANPA+M AA++  +     G  R +AVLGDM E+G  +  +H  +    + 
Sbjct: 362 VTLINDAYNANPAAMSAALT--TAAELAGPSRLVAVLGDMYELGPEAAEYHRQVGRQAAE 419

Query: 399 YNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +  +   G     + D    +      +      +     +   +   DV+++K+S  
Sbjct: 420 LGVGLLVSVGTLGACIADGAIEAGLTPERIRRFADAETAAAALPGQVEKDDVILIKASRG 479

Query: 455 CGFYRLINLL 464
               R+ + L
Sbjct: 480 MRLERVAHAL 489


>gi|71082737|ref|YP_265456.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 948

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 226/446 (50%), Gaps = 9/446 (2%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I     +   SI+S++I   + FFAIKG + DG+ ++  A Q GA LV+ N    +    
Sbjct: 504 INSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQKKSKKK- 562

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                  VDD L  L + +   R    + II+ITGS GKT+ KE+L   LS I       
Sbjct: 563 -----IVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSP 617

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            S+NN  GVPL+L  +  + +FGIFE+GM   GEI +L+ +++P + VIT I+ AH+ NF
Sbjct: 618 KSFNNKFGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNF 677

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ 259
             I ++A AK+EI   ++  G + LN DD F+  L  K        I++F  K+K+A+  
Sbjct: 678 KNIHQVALAKSEIINNIKTNGILVLNQDDRFY-NLHKKIAKKKNINIFTFSLKNKSANIY 736

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           L K  +   +  + V +  K +      I  +  +N+L T+ I+SI              
Sbjct: 737 LEKIVKERSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLD 796

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           +   +GRG   +  L +    ++DESYN+NP S+K+AI    ++      ++  +L DM 
Sbjct: 797 YEMTKGRGDIIKVKLKKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKKK-LILSDML 855

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G  S+  H++  + ++  ++ ++ + G H+L     L +       +    +   I++
Sbjct: 856 ELGNYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKN 915

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            L + D +++K SNS G   L+N L 
Sbjct: 916 DLNNNDYLMIKGSNSTGLNNLVNKLK 941



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 172/454 (37%), Gaps = 50/454 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S +S        FFAI+G   DG  FI HA++KGA +++  ++         +     
Sbjct: 21  GLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVII--SEQKFEGIKNKVLFLRS 78

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN---- 144
            +V   L++L+   +      +IA+TG+ GK++  +     L+   K  A IG+      
Sbjct: 79  KNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLNLGNKKVASIGTLGVKTK 138

Query: 145 -------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  N    P+ L+++  D     +D  I E     L + R     ++ +  + T +
Sbjct: 139 NSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSHGLKQNRL--DGLKFNTTIFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +  HL       +   +K  +FE  L+  GTI  +     ++ LK  S    +       
Sbjct: 197 SHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYKNLKRISLNNKLDLQALSK 256

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +   D    +++   ++  +E++   K  ++  + IG    +N+ M +          D
Sbjct: 257 SNNGIDIYSHQFR--DDKQIVEIKYNQKHYKLKINLIGKIQLKNLFMAMLAAKKSNLKFD 314

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +K  S      GR ++     N     L    Y   P ++K  ++ L +       R 
Sbjct: 315 QIVKLASRVKSVIGRFEKIGTLKNNSKVIL---DYAHTPDALKTCLTNLKE--QFENKRI 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             V G     G   +     + ++ + Y    V+L+  +     D  P+ I +   +T+D
Sbjct: 370 FIVFGC---GGNRDKDKRPIMGKIANQY-CDRVYLTDDNPR---DENPKKIRLAIKKTID 422

Query: 432 ------------GLFLFIQSSLVDGDVVVV--KS 451
                        +   I   L  GD++V+  K 
Sbjct: 423 KSKVFEISSRSKAIHKAILD-LKTGDILVIAGKG 455


>gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 516

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 192/497 (38%), Gaps = 39/497 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +   + + + G    G  P   V G +  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIEL-SLGTIAEIVGGSLTSGTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAA 59

Query: 59  HAVQKGAGLVVV------------------------NTDMVASIGSLSIPVFGVDDVLGA 94
            AV  GA   ++                          D  A+   +   V  V   LG 
Sbjct: 60  KAVADGAVGCLLSRPVMDGMRPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGL 119

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +  +    +    ++ +TGS GKT+TK+M+    S+   T A  GS+NN IG P T  
Sbjct: 120 IARHVIDILTQKGLVVVGVTGSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTAL 179

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +   +  F I E+    +G I  L  +  P I V   +  AH+  F     IA AK E+ 
Sbjct: 180 KCTAETQFLISEMSARGIGHIAHLAAIAPPKIGVELNVGTAHVGEFGSQTAIAQAKGELV 239

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQ-SWM 272
           E L + G   LN DD     + +++ A     + S+   S  A              +  
Sbjct: 240 EALPENGEAVLNADDPLVAQMASRTRA----RVTSYSAVSTAAAVYATDITFDHNACARF 295

Query: 273 EVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            + ++ +++  +   + G H   N L           D +T     S+         R  
Sbjct: 296 RLHIEDENVHQITLLVAGEHQVSNALAAAAAAHAAGIDSETIAH--SLNRHVGASAHRMS 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                   T+ID++YNAN  SM+A +S L   +        AVLG M E+G  SQ+ H  
Sbjct: 354 LVSCPRNITVIDDAYNANNESMRAGLSALVHTARSRGSSAWAVLGPMGELGRESQTVHAA 413

Query: 392 LAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   L    +  +   G      AL  A  +  I    + T       +   L   DVV+
Sbjct: 414 IGAELKNIGVHGLIAVGENSDSRALATAAEKTGITTLVARTNLEAAHKLAPLLHADDVVL 473

Query: 449 VKSSNSCGFYRLINLLL 465
           VK+SN+   + + + L+
Sbjct: 474 VKASNAFALWEVADELV 490


>gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 452

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/470 (24%), Positives = 212/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F  I     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  GAKAILVSKKQ-----GLDIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S     ++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEYSNQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEEF 468
           +  Y E+ D L   +   L       + + VK + S     ++  + E  
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSIKLTVKGARSFKMEEIVKFVKENL 452


>gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
 gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
          Length = 483

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 209/485 (43%), Gaps = 31/485 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR  A    F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDLG 65

Query: 65  AGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKL---------AVAARLRSKA 108
           A   +V+    A  G        + I +  V+D + AL  L           AA    + 
Sbjct: 66  AVGAIVSDLEAARSGLSQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQAAAEQGDRL 125

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + E+G
Sbjct: 126 TVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEMG 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G I +LT +     A +  I  AH+  F  IE +A+AKAEI  GL   G   LN  
Sbjct: 186 ASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPEGIAILNA- 244

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC-SEQSWMEVQLQG--KSMEVV 284
               +   A    L    + +F  + + AD +        + ++  ++ L G  +   V 
Sbjct: 245 ---DDARAAAMAELAPARVLTFSARGRQADLRAENVDLDAAARAAFDLHLPGLAEPRRVQ 301

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L   G+        +     L     +     R   +   G   LID+
Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGLAPELVADRLGSVSIESPH--RMDISELSGDLLLIDD 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYNAN  SM AA++     +  G+ RR+ V+ +M E+GE S + H    E+ +    + +
Sbjct: 360 SYNANIDSMTAALA--VLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAML 417

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL + L
Sbjct: 418 IGIGSTQEALEAARARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRLADHL 477

Query: 465 LEEFP 469
            E  P
Sbjct: 478 KEVRP 482


>gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 468

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 200/466 (42%), Gaps = 17/466 (3%)

Query: 10  LLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + +A +G   G  P    NG +  DSR  AP   + A +G + DGHD++  A + GA   
Sbjct: 8   IAEATRGVVHG--PDVSANGPVVTDSREAAPGGVYVARRGENADGHDYVASAARAGAVCA 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKE 124
           +V   +  S     I    V D  GAL  LA A     +A     ++A+TGSVGKTTTK+
Sbjct: 66  LVERVVDLS-DCPPITQVVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKTTTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+   T A   S+NN +G+PLT+          + E+G S  G I +LT +  P
Sbjct: 125 LLLQVLSADAPTVAPRLSFNNEVGLPLTVLTADESTRHLVLEMGASGPGHIAYLTRIAPP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+   +  AH+  F  +  +A AKAE+ EG  +  T  LN DD     +  ++     
Sbjct: 185 DVAIELVVGHAHMGGFGSVAGVAEAKAELIEGSRQGATAVLNADDPNVAAMAPRAKG--- 241

Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  F  S   AD      +  +   +   +        V    +G H   N L     
Sbjct: 242 -PVVRFSPSGVGADVVAEDVRVDAAGRASFTLAAPEGREPVSLSLVGAHHVANALAAAAG 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLS 361
              L   +    +ALS            R   +     TLID+SYNAN  SM+AA++ L 
Sbjct: 301 ARALGLGLPLIARALSGARALSPHRMDVRGLRIGAVPLTLIDDSYNANIDSMRAAVAALE 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I      R IAVL +M E+GE S + H  +  +LS   +  +   G       +     
Sbjct: 361 AI--GKGRRTIAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDAHYYSEGAASV 418

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 E        +   L D  VV+VK S +   +++ + LLEE
Sbjct: 419 PDRVLVEDPGAALAAVLDRLTDDCVVLVKGSYNSYSWQVADGLLEE 464


>gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
 gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
          Length = 500

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 132/501 (26%), Positives = 208/501 (41%), Gaps = 57/501 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + L+ +         Q     I  D+R I   + F AI+G ++DGHD++  A  KGA
Sbjct: 10  NLTEALKDLNPTFHSDFTQTS-KKIITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKGA 68

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKE 124
            L +V+  +        +P   V D   AL KL    R +     ++AITGS GKTT KE
Sbjct: 69  VLAIVSRAV-----ESDLPQLVVTDTKLALGKLGAYRRDQHPNLKVVAITGSSGKTTAKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L+ I  T    G+ NN +GVP+ L  +     + + ELG +H+GEI + T LV+P
Sbjct: 124 MLGSILNRIAPTLITRGNLNNDLGVPMMLLELTDAHRYAVMELGANHVGEIAYTTQLVKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A +  I  AHL  F G + IA  K+EI++GL   GT  + + D +F+ L   +     
Sbjct: 184 DVACVLNIGTAHLGEFGGRDNIAKTKSEIYQGLSDAGTAIVPFGDDYFDTLLNNAQQF-T 242

Query: 245 KTIYSFGKSK--------------------------NADFQLRKWKQCSEQSW---MEVQ 275
           + I +FG+                              D      +  +  ++      +
Sbjct: 243 QNILTFGERDVSLADAGVDMQQAKEIGLTDEDTVLLMGDVFADDVEVGNTSTFSLNFNFE 302

Query: 276 LQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +   +S  V  +  G H   N L        L   +D   K L    P +GR        
Sbjct: 303 IDEIESQNVSLNFAGEHNISNALAAAACAQALGLSIDDIAKGLDAAKPAKGRLNFIEF-- 360

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G  TLID++YNANP+++ AA  VL           + VLGD+ E+G+ +Q  H  L E
Sbjct: 361 --GKHTLIDDTYNANPSAVLAATQVL----VSQGAPTMLVLGDIGELGDAAQEEHRKLGE 414

Query: 395 VLSLYNISHVWLSGFHV--------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD- 445
            ++   ++ ++  G            +   A    +          L   I+  L   D 
Sbjct: 415 AIAASGVTVLYTVGELTPVTVAQAQASGMQAQASGMQAQAYPDKATLLAAIKDKLTSSDD 474

Query: 446 --VVVVKSSNSCGFYRLINLL 464
              ++ K S      ++I+ L
Sbjct: 475 AWHILFKGSRYMMMEQVIDEL 495


>gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 457

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 202/464 (43%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   D+L  I+    G +       I IDSR+    + F AIKG ++DGH+F+   + KG
Sbjct: 6   FEIKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              VV+   M   +     P + V D L A  KL +  R +    ++AITGSVGKTTTKE
Sbjct: 66  VKSVVIKEGMQKLLPDNF-PCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTKE 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+ + K      ++NN IGV LT+     +    + E+GM  LG+I  L+   +P
Sbjct: 125 MVGEVLNKLGKIKLSHANFNNEIGVGLTILATDKEDKVLVLEMGMRGLGQIENLSKYSKP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  AH+      + I  AK EI + L   G + +  +D   E    +     +
Sbjct: 185 DIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGRV 244

Query: 245 KTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +         D   +    +     S   + ++    E      G+H A N L+   +
Sbjct: 245 TKVELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFE--ISFEGFHNASNFLLAYAV 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D +    + + F      G+       +   T+ DESYNA+P S+KA I  L +
Sbjct: 303 AKELGIDFE----SFNKFDFVSLGGRNKILKSVK--TTIYDESYNASPESVKACIKTLLE 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALK-DALPR 420
                   +  + G M E+GE S+ FH ++  +++  +I   +++       +  + L  
Sbjct: 357 ----KPRNKFFIFGSMQELGEESEKFHKEIFNLINNSDIEKCLFICDKKNKKIYTNYLKD 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    +  +   I  S   GD +++K S S    ++I L+
Sbjct: 413 KKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRSWQLEKIIELI 456


>gi|330721151|gb|EGG99273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-22C6-diaminopimelate--D-
           alanyl-D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 376

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 174/378 (46%), Gaps = 11/378 (2%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++   AL  L    R   K  ++A+TGS GKTT KEM    L  +  T A  G++NN +
Sbjct: 2   VENCRDALGLLGSINRESFKGPMLAMTGSAGKTTVKEMSAAILGQLGNTLATAGNFNNDL 61

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL R+  +  + + ELG S +GEI +   LV+P +A+IT  A AH+  F  +  + 
Sbjct: 62  GAPLTLLRLAKEHQYAVLELGASSIGEIAYTAGLVKPDVAIITNAAEAHIEGFGCLNNVV 121

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI + L  +G   +N DD      KA++     + ++S  ++  ADF  R ++  +
Sbjct: 122 QAKGEILDALPPSGVAVINGDDLNAYKWKARA-GDRRQLVFSLNENSGADFFARSYELQA 180

Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +  E+     +++V  + +G H   N L      S L A +      L    P  G 
Sbjct: 181 NGGFAFELVSPEGAIKVTLNHLGKHNIANALAAAAATSELGATLLQIKTGLEAVGPVAG- 239

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R           +ID+SYNANP S++AAI VLSQ      G +I VLGDM E+G+ + 
Sbjct: 240 --RLTGITLSSGARIIDDSYNANPESLRAAIDVLSQ----CPGHKILVLGDMAELGDTAL 293

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H + A       I ++   G                H  E  D L   +++ +     
Sbjct: 294 HDHQEAARYARNQGIDNLMTVGSLSAHAAREF--GPQGHAFENHDSLIETLRNRINGHTT 351

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK S S    R++   
Sbjct: 352 VLVKGSRSAHMERIVQAF 369


>gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
 gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
          Length = 478

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 195/449 (43%), Gaps = 35/449 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  ++G+ F L A++KG    +V+ D+          +  VD
Sbjct: 51  ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDEDVANDPR-----IIKVD 105

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L     LA   R +    +I ITG+ GKTTTKE++   LS         G++NN +GV
Sbjct: 106 NCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQKYNVLYTQGNFNNDVGV 165

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L     P   +IT +  AHL  F   E +   
Sbjct: 166 PKTLFRLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITNVGRAHLQGFGSFEGVIKT 225

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L   +   IF+N D+       +    + +     +    +  +     +   
Sbjct: 226 KCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSP---YSTDPDNQYSCISGEVLE 282

Query: 268 EQSWMEVQL---------QGKSMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              +++ +          +G+S +        IG +   N+L  + +      D    + 
Sbjct: 283 CNPFLKFRWREPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAIAVGINFGVDRKKIVA 342

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  + P   R +      N     LI ++YNANP+SM+AA+     +       ++A+L
Sbjct: 343 ALEAYEPSNNRSQMTVTEKNH----LIVDAYNANPSSMQAALENFKIMQADN---KMAIL 395

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G M E+GE+S   H  + + L   +I  VWL G      +            + ++ +  
Sbjct: 396 GAMRELGEVSAEEHQHVVDYLKTSDIKTVWLVGEEFEDTQ------CDFRKFKDVEEVKA 449

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            I +    G  +++K SNS   Y+L  LL
Sbjct: 450 AIAAEQPTGHYILIKGSNSTKLYQLPELL 478


>gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 511

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/521 (24%), Positives = 207/521 (39%), Gaps = 70/521 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ +   G    +  P   V G +  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIAL-SLAEIAEITGGRLDSVDEPDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYAT 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVD-----DVLGALNKLAVAARL--------- 104
            A+ KGA  V+           + +P   V+     +  GA   +               
Sbjct: 60  TAIDKGAVAVLAARP-------VGVPAIVVEPHGRVEGDGANADIYANDEDGSAAAVVAA 112

Query: 105 --------------RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
                             TI+ +TGS GKT+TK+++      + +T A  GS+NN IG+P
Sbjct: 113 LSAIARAVTQRLAAEQNLTIVGVTGSAGKTSTKDLIATIFREVGETVAPPGSFNNEIGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R      + + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTRYLVAEMSARGIGHIRHLTEITAPRVGVVLNVGTAHLGEFGSRENIAQAK 232

Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRK 262
            E+ E L      G   LN DD F   +  ++ A   K +Y       G +  A +    
Sbjct: 233 GELVEALPNAEAGGVAVLNADDPFVAAMAPRTEA---KVVYYSTENRRGGAPAAQYYATD 289

Query: 263 WKQCS-EQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  +    +     + + V     G H   N L        L    DT   ALS  
Sbjct: 290 IVLDDVARPSFTLHSPDAEPVAVKLQVFGSHQVSNALAAAAAAIELGVSADTVAAALSGH 349

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMC 379
                   R      +   T+ID+SYNANP SM+ A  ++    +   + R IAVLG+M 
Sbjct: 350 RLASEH--RMDVRTRRDGVTIIDDSYNANPDSMRAAIAALAYTAAARPDARSIAVLGEMG 407

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPR--------SIHVHYSET 429
           E+G  ++  H  L E L+ Y++ H+   G +    A+ +A  +        +     ++ 
Sbjct: 408 ELGSDAEQSHRQLGEFLAKYHVEHLIAVGENPNCRAMAEAAAQQGINTVVCADAAAAAQA 467

Query: 430 MDGLFLFIQSSLVD------GDVVVVKSSNSCGFYRLINLL 464
           +DG+     + + D       DVV++K+SN+   + +   L
Sbjct: 468 VDGILRVAPAGVDDWASRSVKDVVLIKASNAQRLWLVAEQL 508


>gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium diphtheriae]
          Length = 496

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 130/496 (26%), Positives = 202/496 (40%), Gaps = 44/496 (8%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA--- 60
           T   + + + G    G  P+  V G +  DSR ++    F A+ G   DGHDF+  A   
Sbjct: 5   TVEQIARIVGGTLTQGTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVPAALES 64

Query: 61  ------------VQKG-AGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARL- 104
                       +  G A  +VV         + S      +D  V   L  + + AR  
Sbjct: 65  GAAAALVAHPVKIDSGLAPAIVVPPATGQQQSANSYATEHDEDGSVAAVLQGMGLIARRV 124

Query: 105 -----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    T++ +TGS GKT+TK+ML   LS+   T A  GS+NN IG P T  R    
Sbjct: 125 IDTLTAQGLTVMGVTGSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHPYTALRCTEQ 184

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    +G I  L  +  P I V+  +  AHL  F   E IA AK E+ E L  
Sbjct: 185 TRYLVAEMSARGIGHIAHLAQIAPPKIGVVLNVGTAHLGEFGSREVIAQAKGELVEALPH 244

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCS-EQSWMEVQLQ 277
            G   LN DD     ++ ++ A     + +F   S++AD      +     ++   + + 
Sbjct: 245 DGVAVLNADDDLVAGMRTRTDA----KVITFSANSQDADVYATDIELDDYARARFTLHIG 300

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                V     G H   N L            +D   +ALS  +       R        
Sbjct: 301 EAENVVTLRVAGQHQVSNALAATAAAYAAGIAIDDIAEALS--NHLGASAHRMALMHRSD 358

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRR------IAVLGDMCEMGELSQSFHID 391
             T+ID++YNAN  SM+A ++ LS  + H +  +       AVLG M E+GE S + H +
Sbjct: 359 GATIIDDAYNANTESMRAGLTALST-TAHNKSHKGEASHAWAVLGPMSELGEESVAAHEE 417

Query: 392 LAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVV 448
           +  +L   N+  + + G     LAL D   RS      +         +  ++   DV +
Sbjct: 418 IGRLLGELNVHGLIVVGDSADSLALADGARRSNVTTLMARDTAEAADLLDQNMGSADVAL 477

Query: 449 VKSSNSCGFYRLINLL 464
           VK+SN+   +    +L
Sbjct: 478 VKASNAYRLWETAEIL 493


>gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 442

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 129/434 (29%), Positives = 205/434 (47%), Gaps = 21/434 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+KG +++G+ F   A+++G    VV+      IG+       VD
Sbjct: 17  ITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVDESTPDMIGNEQ--YIIVD 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R     TII ITG+ GKTTTKE+L   L+        +G+ NN IGV
Sbjct: 75  NVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNLNNDIGV 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  +V P+ A+IT +  AHL  F   + +   
Sbjct: 135 PKTLLRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALITNVGRAHLQGFGSFDGVKRT 194

Query: 210 KAEIFEGLEKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           KAE+++ +E        F+N + +    + +          YS   S  A F        
Sbjct: 195 KAELYDFMEAHNRANNIFINAESADLLEMFSTHCKSESYIAYSPTNSVEASFVAEITANN 254

Query: 267 SEQSWMEVQLQGKSMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S+   +   +S        H IG +   NML  + I   +  +     KAL  + P 
Sbjct: 255 PFVSFRWKETNNESDTWHNVGTHLIGAYNIANMLAAVSIGRTMGVESKDICKALENYIPS 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  + A N    T+I ++YNANP SMKAA+    ++      R++ +LGDM E+GE
Sbjct: 315 NNRSQLIKTAHN----TIIMDAYNANPTSMKAALENFIKMDVE---RKMVILGDMKELGE 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +S   H  + ++L+L     VWL G   +A ++           E ++ +   +Q + V 
Sbjct: 368 VSNCEHQKICDLLNLAQFDCVWLVGKEFMATQNDFKS------FENVEQVIAELQQTDVQ 421

Query: 444 GDVVVVKSSNSCGF 457
              ++VK SN  G 
Sbjct: 422 NFCILVKGSNGIGL 435


>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 440

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 217/463 (46%), Gaps = 27/463 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +   ++G  +G      V G+ +DSR++   + F  +KG   DGHD+I   
Sbjct: 1   MKDLKT-DIIANWVKGSVLG---STQVQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDV 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+      I +L +    VDD + AL   A A R    AT I ITGS GKT
Sbjct: 57  IGKGAVAVLVD----HKIDNLDVCQIIVDDTMAALQLFAKAYRDTLNATFIGITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK++L   LS +  + A   + N  IG  L L RM  D +FGIFE+G+ ++G++  +  
Sbjct: 113 STKDILFSILSRVGNSIATYKNQNTEIGTYLNLFRMNDDTEFGIFEMGLDYVGDVAVMAE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +RP   ++ ++APAH+ NF  IE IAS K  IF+ +      F   D   FE  ++ SH
Sbjct: 173 CIRPDAGLVMSLAPAHMMNFDSIEHIASEKMRIFDFVTHKDLSFYQGD---FEQYRSISH 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  ++FG +++ ++ +      +     ++      +    + +G H A N    +
Sbjct: 230 GE-----HTFGFNEDNEWVVSDVSSNNHGISFKLD----GVAYSSNLLGNHQASNCAGVI 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++S L  D     + L+       R +       +G   ++ ++Y +NP S K A+ +L
Sbjct: 281 ALLSKLGIDDAVIREGLNHVALTSLRTELVE----KGNALVLLDAYKSNPISAKYALDLL 336

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
           +      +G R+A+L DM E+G  S   H+++ + +   NI      G     AL D+  
Sbjct: 337 AHY--EYDGDRVAILSDMVELGPESHKAHLEVLDCIQDLNIKMAHTLGPEFKKALSDSRL 394

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +      +T +     +     +  ++++K S S    RL+ 
Sbjct: 395 DASRFTNDDTFEAFVERVTPCFDEHAMILIKGSRSYQLERLME 437


>gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 466

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 219/455 (48%), Gaps = 31/455 (6%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---S 80
           +  +  ++  S  +     F  ++G   DGH+FI  A+ +GA   +V  D          
Sbjct: 27  ESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRKNFDSK 85

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--A 138
                  V D L +L KLA   R R    +IA+TGS GKTTTKE+L   L ++++     
Sbjct: 86  ERAKAIPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEPVLVV 145

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IG+P TL R+       + ELGM+H GEI  LT + +P  A+ITTI  AH+ 
Sbjct: 146 TEKNYNNEIGLPFTLFRISDRTRIVVCELGMNHKGEIARLTQIAKPDFALITTIGTAHIE 205

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                + IA AK E+ EGL K G +F      + ++LK+     G + I       N  F
Sbjct: 206 FLGSQKNIAKAKVEVAEGLVKGGKLFYPDTGEYSKILKSTLRRHGSRLIL---VKPNHIF 262

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            + + +     S   ++ + K +E   +  GY + +N+ + +  +  +    +  +K +S
Sbjct: 263 SVLQKRP----SGFLLEYRDKEIEW--NLPGYKLLENLAIAIACLETVGVPTEWILKGIS 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +      R  L +G +++I+++YNAN  SM +++ V  Q++   E     VLGDM
Sbjct: 317 TFKSVD-----KRLNLQKGKYSIINDTYNANYESMLSSLEVTDQLADGKEFY--VVLGDM 369

Query: 379 CEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHV-----HYSETMDG 432
            E+G+ SQ FH +L +  S + N+  ++  G   L +++   +         H++ T +G
Sbjct: 370 KELGKHSQKFHKELGKKCSEFQNLKGLFTFGTDSLWIREEFVKRTTFPRFSEHFAGTEEG 429

Query: 433 LFLFIQ---SSLVDGDVVVVKSSNSCGFYRLINLL 464
           L   ++    ++  G +V+ K+S      R ++ L
Sbjct: 430 LVKLVRKFSQTVPKGSIVLAKASRGIQLERFVDSL 464


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 115/487 (23%), Positives = 200/487 (41%), Gaps = 34/487 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  D+ + I    IG  P   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YTIEDIARIIGARRIGDRPAA-IDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIRDLYA 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPV--------------------FGVDDVLGALNKLAVAA 102
           +G    VV+ + +  +G     V                      V + L AL KLA   
Sbjct: 62  RGVRNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKLAEQH 121

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R R +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    + 
Sbjct: 122 RDRFQIPVIGITGSNGKTIVKEWLHQLLSPERMITRSPRSYNSQIGVPLSVWQMSEQTEL 181

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 182 AILEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---V 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD F      KS  L  + I    K       + K ++  + + +  +       
Sbjct: 239 VIYNGDDEFINNCVGKSM-LAAREIAWSRKDMERPLYISKVEKQEDSTVISYRYLDMDNT 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N L  L     L    +   + ++   P      R      +    LI
Sbjct: 298 FTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPVA---MRLEVKEGKNGCLLI 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++  S+  A+  L + S     +R  +L D+ E G+ + + +  +A++++   I 
Sbjct: 355 NDSYNSDLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIE 414

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRL 460
            +   G  + +       SI   +      L   I +  L  + +++++K +   GF  L
Sbjct: 415 RIIGVGNEISSCAARF--SIEKAFYPDTATLIEAIGRGELRLENEIILIKGARKFGFDAL 472

Query: 461 INLLLEE 467
              L ++
Sbjct: 473 TEALEKK 479


>gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 452

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 118/470 (25%), Positives = 216/470 (45%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  A Q     I     +  +SI+S  I     F AI     DGHDFI  A+  
Sbjct: 2   IKSLKQL--ATQAGLEYIGEDVSIQTVSINSNEIKQDALFVAIVANR-DGHDFIPSALSY 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V+         ++IP     + +  L  LA   R   K  II++TGS GKTT K
Sbjct: 59  GAKALLVSKKQ-----DINIPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L   KK +   G++NN++GVP+T+   P DVDF + E G S  GEI+    +++
Sbjct: 114 EMIVTLLGG-KKVHFTQGNFNNYLGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAEIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++A+IT +  +HL N   ++ +   K E+ + L K G   +N DD   E + A +  L 
Sbjct: 173 PNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIVNLDD---ERIPAYADKLD 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I     +++AD  +  ++   E   +++++  K        IG H   N ++ +  V
Sbjct: 230 CNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +  ++        +G   R+         TL+D++YNA+  +++AAI+ L++ 
Sbjct: 290 VAARLEPNDFLQNTQNIKNYKG---RFSTEKLNDKLTLVDDTYNASAGAVQAAIADLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G+++  +  M E+G+  Q++H  + + L+   + +++L G  +++          
Sbjct: 347 ----DGKKVIAITSMRELGDEGQNYHRKMGQWLNKAGLDNIFLFGEKNLIKFALEEYEGS 402

Query: 423 HVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +V Y +    L   +   L         + VK + S     ++  + E  
Sbjct: 403 NVKYYDDKQQLNNDLLKVLDGYKSQNTKLTVKGARSFKMEEVVKFVKENL 452


>gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 482

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 211/489 (43%), Gaps = 34/489 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +  Q    G   P+  V+G + IDSR   P   F A+ G   DGHDF  
Sbjct: 1   MIAL-TLDRIAEITQTAIGGSARPEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-----ARLRSKATIIAI 113
            AV  GA   +V+  + A          GV   L  L +          R   +A ++A+
Sbjct: 60  SAVADGAAAALVSRPVDAPHLLAEGGDEGVVAALTRLARHVARELSDPRRGAERAEVVAV 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK+++   ++ +  T A  GS+NN IG PLT+ R      + + E     +G
Sbjct: 120 TGSSGKTTTKDLIAQVVARMGPTVAPAGSFNNEIGHPLTVLRADTGTRYLVLEAAARGIG 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLN 226
            I  L  +  P I V+  +  AH+  F   + IA AK E+ E L          G   LN
Sbjct: 180 HIAHLCGVAPPRIGVVLNVGSAHMGEFGDRDAIAKAKGELVEALPPGAADRGAGGVAVLN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH 285
            DD     + A++ A     + ++G  ++A  +          +    + L G++  V  
Sbjct: 240 ADDPRVNAMAARTRA----RVVTYGLGEDATVRATDVVMRETGAPSFTLHLAGRTARVEL 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L    +   L   VD   +AL    P      R     + G  TL++++
Sbjct: 296 ALVGAHQVHNALAAAAVADELGMGVDEIAEALGAATPVSRW--RMEVTEHAG-ATLVNDA 352

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM+AA++ L  ++   + R IAVL  M E+GE     H  + E+ +   ++H+ 
Sbjct: 353 YNANPESMRAALTTLGALA--RDRRSIAVLAHMAELGEGGGVEHERIGELAARTGVAHLV 410

Query: 406 LSGFHVL--------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           + G            A +  L +   V  ++  +            GDVV+VK S   G 
Sbjct: 411 VVGEAAEGIAVGAEGAARQGLWQGECVRVADVHEAAAAVRARMRT-GDVVIVKGSRVAGL 469

Query: 458 YRLINLLLE 466
            R+I+L+ E
Sbjct: 470 ERVIDLITE 478


>gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 576

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 148/548 (27%), Positives = 222/548 (40%), Gaps = 89/548 (16%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI------------------VPQGFV--NGISI----DSRS 36
           M P+ +  ++  A+ G                            +  N + I    DSR 
Sbjct: 17  MMPM-SVKEVAAAVNGRLFIGGCLVKENHSVTSEKFCITDNDVVISDNDVVIYATSDSRK 75

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGAL 95
           +     F AI G   DGHDF+  A + GA + +V   +      +  I    V++ + AL
Sbjct: 76  VVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENSVEAL 135

Query: 96  NKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
             LA     R +A     +II ITGSVGKTTTK+ML   LS++  T A IGS+NN IG+P
Sbjct: 136 GLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNEIGLP 195

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT  ++  +  F I E+G +H+GEI  LT +  P +AV+  +  AHL  F  +E IA AK
Sbjct: 196 LTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERIAQAK 255

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRK------ 262
           +EI  GL   G   LN DD     +++ +    ++    FGK+ N   DF          
Sbjct: 256 SEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLR---WFGKNSNTEGDFDASNNGNYQL 312

Query: 263 ---WKQCSEQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDT 312
                   E    E  L  K+ +   + +       G H   N +    +      ++D+
Sbjct: 313 SASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLDS 372

Query: 313 AIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH----- 366
             K L           +  + + N   FTLID+S+NANP SMKA I  L     H     
Sbjct: 373 IAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHDL 432

Query: 367 ------------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                           RIAVLG M E+G    + H  + E ++ +NI  +   G      
Sbjct: 433 NVNTEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNIDALIAVGSKFDKK 492

Query: 415 KDALPRSIH-----------------VHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSC 455
            D L   I+                 V++          + + +      VV++K S++ 
Sbjct: 493 LDELAGCIYKGAKDNWQNKSLDVENGVYFVHDCTEADNVVWNLVAAHSSSVVLLKGSHAS 552

Query: 456 GFYRLINL 463
           G   L   
Sbjct: 553 GLSVLAER 560


>gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Brevibacterium linens BL2]
          Length = 488

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 134/483 (27%), Positives = 216/483 (44%), Gaps = 30/483 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++  A+ G   G+ P+  ++ G+  DSR + P + + A +G  +DG +F   AV+ G
Sbjct: 5   SAAEIATAVSGELYGVDPETKLSAGVVTDSREVGPGDIYVARRGESFDGIEFAAAAVEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKT 120
           A L++   + V ++   ++P   V D   AL +LA       R   + T+IAITGSVGKT
Sbjct: 65  AALIIG--ESVPTLDDATLPTVLVSDATEALGQLAKCNIESLREAGEITVIAITGSVGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K++    L+   +T     SYNN +GVPLT  R      F + E+G   +G + +LT 
Sbjct: 123 TVKDLAADLLAGEDETVWPPNSYNNEVGVPLTALRAGETTRFLVLEMGARSIGNLAYLTS 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP IAV   +  AH   F  IE  A AKAE+ E L       LN DDS    ++    
Sbjct: 183 LVRPDIAVELAVGTAHSGVFGSIENTARAKAELVESLSAGSVAILNADDSRVAGMREVL- 241

Query: 241 ALGIKTIYSFGK---------SKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIG 289
                +   F +          +++  +       +   +   + L G+   +V    IG
Sbjct: 242 -SPDVSTLWFSQRESLPEWVADEDSVVRGTGVTTDASGHATFSLNLPGEEPQDVRLALIG 300

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L +  I       + + +  LS          R     +    T+++++YNAN
Sbjct: 301 EHHVGNALASAAIAHACGVGMKSIVTTLSTSSAASRW--RMELIDSPSGVTVLNDAYNAN 358

Query: 350 PASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           P SM+A++  L+ +          R  AVLG+M E+GE S S H D+ E++   NI+   
Sbjct: 359 PESMRASLKTLASMGRGDEESRPRRTFAVLGEMLELGEESISAHSDIGELVVRLNITRTI 418

Query: 406 LSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           + G     + +A            +  T       + + L  GD+V+ KSS   G   L 
Sbjct: 419 VVGDGAKPIFNAANLEGSWGNEAAWVPTAAEAKDLLNAELAPGDIVLFKSSRDAGLRYLG 478

Query: 462 NLL 464
           + +
Sbjct: 479 DEI 481


>gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 577

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 148/548 (27%), Positives = 222/548 (40%), Gaps = 89/548 (16%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI------------------VPQGFV--NGISI----DSRS 36
           M P+ +  ++  A+ G                            +  N + I    DSR 
Sbjct: 18  MMPM-SVKEVAAAVNGRLFIGGCLVKENHSVTSEKFCITDNDVVISDNDVVIYATSDSRK 76

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGAL 95
           +     F AI G   DGHDF+  A + GA + +V   +      +  I    V++ + AL
Sbjct: 77  VVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENSVEAL 136

Query: 96  NKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
             LA     R +A     +II ITGSVGKTTTK+ML   LS++  T A IGS+NN IG+P
Sbjct: 137 GLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNEIGLP 196

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT  ++  +  F I E+G +H+GEI  LT +  P +AV+  +  AHL  F  +E IA AK
Sbjct: 197 LTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERIAQAK 256

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRK------ 262
           +EI  GL   G   LN DD     +++ +    ++    FGK+ N   DF          
Sbjct: 257 SEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLR---WFGKNSNTEGDFDASNNGNYQL 313

Query: 263 ---WKQCSEQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDT 312
                   E    E  L  K+ +   + +       G H   N +    +      ++D+
Sbjct: 314 SASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLDS 373

Query: 313 AIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH----- 366
             K L           +  + + N   FTLID+S+NANP SMKA I  L     H     
Sbjct: 374 IAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHDL 433

Query: 367 ------------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                           RIAVLG M E+G    + H  + E ++ +NI  +   G      
Sbjct: 434 NVNTEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNIDALIAVGSKFDKK 493

Query: 415 KDALPRSIH-----------------VHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSC 455
            D L   I+                 V++          + + +      VV++K S++ 
Sbjct: 494 LDELAGCIYKGAKDNWQNKSLDVENGVYFVHDCTEADNVVWNLVAAHSSSVVLLKGSHAS 553

Query: 456 GFYRLINL 463
           G   L   
Sbjct: 554 GLSVLAER 561


>gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
 gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
          Length = 525

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 125/504 (24%), Positives = 204/504 (40%), Gaps = 51/504 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +T  ++ + + G  + I PQ      V G +  DSR++ P   F A+ G   DGHD    
Sbjct: 4   YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAS 63

Query: 60  AVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-- 106
           AV             G   +VV+ +   +  +L+  +    D  GA    A+A   ++  
Sbjct: 64  AVAAGAVAVLAARPVGVPAIVVSPEPDVTADALTGVLEHDADGSGAAVLAALAKLAKAVA 123

Query: 107 ------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                   TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     
Sbjct: 124 AELVAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATRGT 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +
Sbjct: 184 DYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQAVPAS 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIK----TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           G + LN DD     +   + A  ++    T    G +   D            +    + 
Sbjct: 244 GVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDVWAGPVSLDRLARPQFTMH 303

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + +V     G H   N L    +     A V     AL+   P      R + +  
Sbjct: 304 AGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPVS--RHRMQVSTR 361

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPH--------------GEGRRIAVLGDMCEM 381
               T+ID++YNANP SM+A +  L+ I+                   R  AVLG+M E+
Sbjct: 362 PDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPGVRPQSRRSWAVLGEMAEL 421

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFL 435
           G  + + H  +  +    ++S + + G    + A+                    D    
Sbjct: 422 GADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAMYHGAVMEGSWGTEAVSVPDRDAALA 481

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYR 459
            +++ +  GDVV++K+SNS G   
Sbjct: 482 LLRAEIQPGDVVLIKASNSAGLGE 505


>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
 gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
          Length = 468

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 192/466 (41%), Gaps = 26/466 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA  V+
Sbjct: 9   IAHWTGGYLHG--EDVRVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML   
Sbjct: 67  VD----HVLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSI 122

Query: 130 LSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L           YA  G+ NN IG+PL +   P D DF ++E+G   LG+I +LT +V P
Sbjct: 123 LEHAAAQSSTVVYANSGNRNNEIGLPLAVIAAPDDADFAVYEMGAGKLGDIGYLTDIVTP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K EI+  L   GT  +N DD+F    + +    G 
Sbjct: 183 DVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    AD      +   +     +      + V     G H   N L    +  
Sbjct: 243 A-VLRFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMAL 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +      L +     GR   +      G   LID+SYNANP S+  AI  L+  +
Sbjct: 302 VAGIPLPQIAAGLGLARSVPGRQVAHALP---GGAVLIDDSYNANPGSLDVAIDTLTTAA 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G    VLGDM E+G    + H           ++ ++  G              HV
Sbjct: 359 ----GPGWLVLGDMRELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEGGHV 414

Query: 425 HYSETMDGLFLFIQSSLV---DGDV--VVVKSSNSCGFYRLINLLL 465
                 D L   +   L    DG +  V+VK S      +++  LL
Sbjct: 415 --FADHDALAAVLWDDLRHVPDGVLPRVLVKGSRGSAMDKIVGALL 458


>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
 gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
          Length = 468

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 192/466 (41%), Gaps = 26/466 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA  V+
Sbjct: 9   IAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML   
Sbjct: 67  VD----HVLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSI 122

Query: 130 LSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L           YA  G+ NN IG+PL +   P + DF ++E+G   LG+I +LT +V P
Sbjct: 123 LEHAAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K EI+  L   GT  +N DD+F    + +    G 
Sbjct: 183 DVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    AD      +   +     +      + V     G H   N L    +  
Sbjct: 243 A-VLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMAL 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +      L +     GR   +      G   LID+SYNANP S+  AI  L+  S
Sbjct: 302 VAGIPLSQIAAGLGLARSVAGRQVAHALP---GGAVLIDDSYNANPGSLDVAIDTLTAAS 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G    VLGDM E+G    + H           ++ ++  G              HV
Sbjct: 359 ----GPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEGGHV 414

Query: 425 HYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
                 D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 415 --FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458


>gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 465

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 192/466 (41%), Gaps = 26/466 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA  V+
Sbjct: 6   IAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVL 63

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML   
Sbjct: 64  VD----HVLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSI 119

Query: 130 LSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L           YA  G+ NN IG+PL +   P + DF ++E+G   LG+I +LT +V P
Sbjct: 120 LEHAAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K EI+  L   GT  +N DD+F    + +    G 
Sbjct: 180 DVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    AD      +   +     +      + V     G H   N L    +  
Sbjct: 240 A-VLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMAL 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +      L +     GR   +      G   LID+SYNANP S+  AI  L+  S
Sbjct: 299 VAGIPLSQIAAGLGLARSVAGRQVAHALP---GGAVLIDDSYNANPGSLDVAIDTLTAAS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G    VLGDM E+G    + H           ++ ++  G              HV
Sbjct: 356 ----GPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEGGHV 411

Query: 425 HYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
                 D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 412 --FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 455


>gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 464

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 211/468 (45%), Gaps = 22/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++     G               +DSR ++    F A+ G   DGHD    AV  GA
Sbjct: 5   TAAEVADLTGGTLAAPHTTRVHGPTVVDSRKVSAGALFVALVGESSDGHDHAAGAVADGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKTT 121
            LV+ + ++        +P   VDDV  AL  +A       R      + A+TGSVGKTT
Sbjct: 65  ALVLASRELDG------LPCVVVDDVTRALGLVAAEHLRRLRASGPLQVAAVTGSVGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++L   LS    T     S+NN IG+PLT+     +  + + E+G S  G++ +LT +
Sbjct: 119 TKDLLGHVLSESGPTVMPRASFNNEIGLPLTVLEAGPETRYLVLEMGASAPGDLTYLTGI 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P ++++  +  AHL  F G++ +A AK+EI  GL   G   LN DD     ++     
Sbjct: 179 APPDVSIVLAVGAAHLGGFGGLDGVARAKSEIVTGLRPEGVAVLNADDHRVVAMRD---- 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L    + +FG  ++A  +  +           +V +  ++ ++    +G H   N L  L
Sbjct: 235 LAPSRVVTFGTVRDAGVRAHRVSVDRLGRVSCQVVVGERTADLSLRLVGEHHLTNALAAL 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L  D+DTA   +S          R          T+ID+SYNANP SM+AA+   
Sbjct: 295 TAAVELGVDLDTAAALVSSVDAASPH--RMAVTERPDGVTVIDDSYNANPDSMRAALKA- 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    + R +AVLG+M E+G  S+  H ++  ++   NI  + + G     L D   +
Sbjct: 352 LAVVAGRDRRSVAVLGEMLELGPDSRDQHDEIGRLVVRLNIKLLVVVGAGASGLADGATQ 411

Query: 421 ----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  V   E +     F+   L  GDVV+VKSSN  G +RL + L
Sbjct: 412 EGSWGEEVVEVEDVPAAERFLAEELRSGDVVLVKSSNGSGLWRLGDAL 459


>gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549]
          Length = 453

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 212/469 (45%), Gaps = 24/469 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L  AIQ     +     +  ++I+S  +     F AI     DGH+FI  A+  
Sbjct: 2   IKSLKQL--AIQSGLEYLGEDVSIQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIAN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V+         L IP     + +  L  LA   R      II++TGS GKT+ K
Sbjct: 59  RAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    +++
Sbjct: 114 EMIVTLLGER-KVHFTQGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQ 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD   E +   +  L 
Sbjct: 173 PNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLE 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K I     +  AD  +  ++  S    +++++  +  +     IG H   N ++ +  V
Sbjct: 230 CKKISCSMTNPKADILVLDYRVTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASV 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  +    ++        +G   R+         TLID++YNA+  +++AAI  L++ 
Sbjct: 290 VAVGLEPKDFLQNTQNIKNYKG---RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI 422
               +G++I  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A   + 
Sbjct: 347 ----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEYPTQ 402

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467
           +  Y E+ D L   +   L         + VK + S     ++  + + 
Sbjct: 403 NAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451


>gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R3021]
 gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 22.4-21]
          Length = 399

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 118/416 (28%), Positives = 188/416 (45%), Gaps = 23/416 (5%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  +VV  +      S+ +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 1   MSQGALALVVQQEN----SSILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 56

Query: 121 TTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 57  TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 116

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 117 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 176

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+  Y  GK    D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 177 KEISNHAIQ--YFNGK----DYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 230

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 231 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 287

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 288 IDVLKSYDAF----RILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 343

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++   
Sbjct: 344 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDKIKC 399


>gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 483

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 139/485 (28%), Positives = 208/485 (42%), Gaps = 31/485 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR       F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAHLGSAGALG 65

Query: 65  AGLVVVN----TDMVASIGSLSIP---VFGVDDVLGALNKL---------AVAARLRSKA 108
           A   +V+         S G    P   +  V+D + AL  L           AA    + 
Sbjct: 66  AVGAIVSDLEAARSGLSQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRAAADRGERL 125

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T++A+TGSVGKTTTK++    L+    T A   S+NN IG+PLT+        + + E+G
Sbjct: 126 TVVAMTGSVGKTTTKDLTRQLLAPSGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEMG 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G I +LT +     A +  +  AH+  F  IE +A+AKAEI  GL   GT  LN  
Sbjct: 186 ASGPGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTTILNA- 244

Query: 229 DSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQC-SEQSWMEVQLQG--KSMEVV 284
               +   A    L    + +F  + + AD +        + ++  ++ L G  +   V 
Sbjct: 245 ---DDARAAAMAELAPARVLTFSSQGRAADLRTENVVLDVAARAAFDLHLPGLDEPRRVQ 301

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L   G+        +   + L     +     R   +   G   LID+
Sbjct: 302 LSVAGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESPH--RMDVSELGGDLLLIDD 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYNAN  SM AA++     +  G+ RR+ V+ +M E+GE S + H    E+ +    + +
Sbjct: 360 SYNANIDSMTAALA--VLPALAGDRRRVVVVSEMLELGESSAADHARTGELAAQAGAAML 417

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL + L
Sbjct: 418 IGIGSTQEALEAAGARGVEVVGFDDAATAISQIDALLSDGDAVLVKGSNGSGAWRLADHL 477

Query: 465 LEEFP 469
            E  P
Sbjct: 478 KEVRP 482


>gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 947

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 216/452 (47%), Gaps = 6/452 (1%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G    + P   +    I+S+ +   + FFAIKG   DG+ F+  + ++ A L VVN   
Sbjct: 498 SGKIKRLSPLISLKKARINSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQ 557

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                S       V + L  L  ++   R      IIAITGS GKTT KE+L   L+ I 
Sbjct: 558 NKLNHSR---QIKVKNTLKFLTNVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNKIS 614

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           K      SYNN  GVPL+L  +    +FGI E+GM   GEI +L+ ++ P + VIT I  
Sbjct: 615 KVSISPKSYNNKFGVPLSLFNINQKDEFGILEVGMDKKGEIDYLSKIIEPDVGVITNINY 674

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KS 253
           AH  NF  I++IA AK+EI + +   G I LN DDSFF+L    +    IK + SFG K+
Sbjct: 675 AHAKNFKNIKQIALAKSEIIDNIRLYGFIVLNADDSFFKLHYNIAKKKNIK-VISFGIKN 733

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             AD +L   K   ++  + + L  K    +      +   N+L  L ++SI        
Sbjct: 734 HKADIKLINIKPFRKKFRINISLNNKRKYFLLSNDFQNNIYNILSALAVISIYKNIFKLD 793

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                 F    GRG       N     LID+SYN+NP S+K+AI    +I+   +  +  
Sbjct: 794 KNIFYDFKIPGGRGDHSVIKFNNKKINLIDQSYNSNPLSLKSAIKNYDKINLK-KSNKYM 852

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           ++GDM E+G  S+  H  +A +++  NI  V++ G     +   + ++           +
Sbjct: 853 LIGDMLELGSHSRRLHRSVAPIINKSNIDKVYVKGKMASIIFKDISKAKKGRILLNKSQI 912

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              I+  L + D +++K+S + GF  ++  L 
Sbjct: 913 IELIRKDLNNNDYLMIKASLATGFNDIVKDLK 944



 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 170/454 (37%), Gaps = 44/454 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           + +GIS D+++I     FFAIKG  +DG++FI  A+ KG+ ++V  T+         I  
Sbjct: 18  YFSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIV--TEKKVKSVQNGILY 75

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN- 144
              ++V   L + A     +    +IA+TG+ GK++        L    K  A IG+   
Sbjct: 76  IHTNNVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILKLNNKKVASIGTLGV 135

Query: 145 --------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                         + I +   L+++    ++  I E     L + R     ++ +  + 
Sbjct: 136 KSKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRL--DGLKFNSGIF 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL     ++   +AK  +FE L +K G +     D      K        K + 
Sbjct: 194 TNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLIT---DQLIPEFKKIKKITINKRLK 250

Query: 249 SFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +    K  + Q+       E    +++L      +  + IG    +N+LM +       
Sbjct: 251 LYALNDKKNNLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAAKNSN 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +  +    P EGR ++     N     L    Y   P ++K  +  L +     
Sbjct: 311 IGLNKILNKIYKLKPVEGRFEKIGKIKNHSKVIL---DYAHTPDALKTCLLNLRE---QF 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPRS 421
             ++I VL      G   Q+    + ++ S ++   + L+  +          +D     
Sbjct: 365 PAKKIIVL--FGCGGNRDQNKRSKMGKIASYFS-DKIILTNDNPRLENPQKIRRDIKKGI 421

Query: 422 IHVHYSETMDGLFLFIQSS--LVDGDVVVV--KS 451
                 E  D      ++   L  GD+++V  K 
Sbjct: 422 KKKKIIEISDRAMAITRAIHDLNSGDILLVAGKG 455


>gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces oris K20]
          Length = 483

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 138/485 (28%), Positives = 209/485 (43%), Gaps = 31/485 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR  A    F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVLG 65

Query: 65  AGLVVVNTDMV-------ASIGSLSIPVFGVDDVLGALNKL---------AVAARLRSKA 108
           A   +V+                 ++ +  V+D + AL  L           AA    + 
Sbjct: 66  AVGAIVSDLEAARSGLSLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQAAAERGERL 125

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + E+G
Sbjct: 126 TVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEMG 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G I +LT +     A +  I  AH+  F  IE +A+AKAEI  GL   GT  LN  
Sbjct: 186 ASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTAILNA- 244

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC-SEQSWMEVQLQG--KSMEVV 284
               +   A    L    + +F  + + AD +        + ++  ++ L G  +   V 
Sbjct: 245 ---DDARAAAMAELAPARVLTFSVRGRQADLRAENVDLDAAARAAFDLHLPGLAEPSRVQ 301

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L   G+        +   + L     +     R   +   G   LID+
Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGIAPELVAERLGSVSIESPH--RMDISELSGDLLLIDD 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYNAN  SM AA++     +  G+ RR+ V+ +M E+GE S + H    E+ +    + +
Sbjct: 360 SYNANIDSMTAALA--VLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAML 417

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL + L
Sbjct: 418 IGIGSTQEALEAAGARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRLADHL 477

Query: 465 LEEFP 469
            E  P
Sbjct: 478 KEVRP 482


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 201/468 (42%), Gaps = 14/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           ++T   +   I     G      V  I  DSRS+    +  FFA+K    DGH++I    
Sbjct: 2   IYTIEKVTTLIGARRYGDR-DCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIAELY 60

Query: 62  QKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++G    VV+      +          V + L AL +LA   R      I+ ITGS GKT
Sbjct: 61  RRGVRNFVVSDVPNNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS          SYN+ IGVPL++  +    + GIFE G+S  GE+  L  
Sbjct: 121 IVKEWLYQLLSDDMYVTRSPRSYNSQIGVPLSVWLLNKQTEIGIFEAGISEPGEMLALRD 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P IAV+T +  AH  NF   E     K  +F       TI  N DD          +
Sbjct: 181 IIQPTIAVLTNLGSAHQENFKSKEAKCREKLILFH---DAKTIVYNMDDEIINDTVESYN 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G K  +SF K+  A   ++  ++    + +    + K  + +   I      N ++  
Sbjct: 238 YSGEKITWSF-KNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPFIDEASISNSIICA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    D   + ++   P      R    + Q   TLI++SYN++  S+  A+  +
Sbjct: 297 IVTLCLGVSTDVLSRRMAKLEPVA---MRLEVKVGQHGCTLINDSYNSDVNSLDIALDFM 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++   H   R   +L D+ + GE  ++ + D++++     +      G  + A  D + +
Sbjct: 354 NRRPDHKGRRHTLILSDIFQSGEKPENLYRDVSDLAYKRGVVKFIGVGPELKAHADQI-Q 412

Query: 421 SIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +  +++ L    +  SL D +V+++K +   GF ++  LL+++
Sbjct: 413 IPEKFFFSSVEQLINSEVFRSLRD-EVILIKGARQFGFDQITELLVQK 459


>gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
 gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
          Length = 524

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 135/520 (25%), Positives = 201/520 (38%), Gaps = 66/520 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-----------GFVNGISIDSRSIAPQEAFFAIKGP 49
           M  L +     Q +    +                  +  +  DSR ++    F AIKG 
Sbjct: 1   MIAL-SVFQAAQILSATLVSSPSDSSQAGDRSDSSTKITSVVTDSRQVSEGSLFVAIKGE 59

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA- 108
             DGHD++  A + GA   +V       +    +P   V D +G+L +LA     R +  
Sbjct: 60  RVDGHDYVNQAARAGACAALV----EHPVEGAVLPQLVVTDTIGSLGRLARYNISRRRQI 115

Query: 109 --------TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                   T++ ITGSVGKTTTK+++   L +   T A +GS+NN IG+PLT  ++    
Sbjct: 116 ALAEGKDFTVVGITGSVGKTTTKDLVKDLLQTAGTTIAPVGSFNNEIGLPLTAVKVDETT 175

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + E+G S  GEI +LT LV P IAV   +  AHL  F  ++ I  AK+E+ + L   
Sbjct: 176 RYFVAEMGASAAGEIAYLTRLVPPDIAVELKVGAAHLGGFGSVDGIRQAKSELVQALTSQ 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------------KNADFQLRKWKQC-S 267
           G   LN  D    L+   +HA    T+  F               K         +Q   
Sbjct: 236 GIAVLNAQDPNIRLMTGSTHAS---TLVWFSDGRIDPQNLPGDSRKQIFIYATDTRQDQE 292

Query: 268 EQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     + L     + V     G H   N L  + +   L     T    L         
Sbjct: 293 DHPSFTLHLPDLPGIPVTLGLSGVHNVMNALAAVSVAYCLGVRPQTIASVLFNHKAMSPH 352

Query: 327 GKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEM 381
                         FTLID+S+NANP SMKA +  LS       G    +IAVLG M E+
Sbjct: 353 RMAVSLVTLTAGESFTLIDDSFNANPDSMKAGLDALSGWKSAESGNEPVKIAVLGSMLEL 412

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS------------IHVH 425
           G   +  H  L    +     +V   G     H+  L  AL +             +  +
Sbjct: 413 GPREEDLHHSLGAYAAQS-ADYVVTVGSETDDHLDTLASALCQGACQRAEQSPVRLLKAY 471

Query: 426 YSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINL 463
              +       +        G VV++K S++ G   L N+
Sbjct: 472 EEHSAGQAATRVAQLARQNPGSVVLLKGSHASGLQTLANM 511


>gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
 gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
          Length = 438

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 215/434 (49%), Gaps = 24/434 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+R +   + FFA+KGP+++G+ +   A++KGA   VV+ +   +     +     
Sbjct: 27  SVQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVDEEAYYTQPDKMM---LT 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L +LA+  R       +AITG+ GKTTTKE+++  L+S  KT A  G+ NNHIG
Sbjct: 84  NDALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVSTVLASAFKTTATAGNLNNHIG 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+ R+P D +  + E+G +H  EI     +  P   +IT I  AHL  F   E +  
Sbjct: 144 VPLTILRIPADAEMAVIEMGANHEHEIEAYCKVALPTHGIITNIGKAHLEGFGSPEGVRR 203

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           AK E+++ L    GT+F+  +  +   +       GI+T+ ++G++  AD+  +     +
Sbjct: 204 AKGELYDFLRNNKGTVFVCNEYPYLVDMSK-----GIQTVITYGEAA-ADYTGQPLADSA 257

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             S ++V       ++    +G +   N++  + +        +    A+S + P   R 
Sbjct: 258 LLS-VKVTGHEGIGQIDSQLVGAYNFPNIMAAVAVGLHFGVPAEKIQHAISSYVPSNNRS 316

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +    QG  T+I ++YNANP+SMKAAI   + I+     +++ +LG M E+G+ S +
Sbjct: 317 QVMK----QGSNTIIMDAYNANPSSMKAAIDNFAGITAE---KKVLLLGGMMELGDDSVA 369

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L ++L   +   V L G       D +  +    Y E      +++Q        +
Sbjct: 370 EHQALVDLLQRTHWHAVVLVG------GDFIKTNHPYIYQENAAAAAIWLQQQQFTDTYL 423

Query: 448 VVKSSNSCGFYRLI 461
           ++K S S G  ++I
Sbjct: 424 LIKGSRSMGMEKVI 437


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/467 (25%), Positives = 191/467 (40%), Gaps = 23/467 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A   H          +G + DSR       F A++    DGH FI  A+  GA 
Sbjct: 4   VADLIAA-GAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV       S+   SI V   +D L  L   A A   +     +AITGSVGKT+TK  +
Sbjct: 63  GVVCQ--YAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAI 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+S         S+N  +G+ +T+A +     + + E G  H GEI  L  L  P I
Sbjct: 121 AQVLASRYSVLRSPRSFNADLGLSVTMAELAAQ-QWAVLEFGADHPGEIAQLCQLFPPEI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T +  AHL  F     IA  KA I + L   G   LN DD     +  ++HA     
Sbjct: 180 GIVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHA----R 235

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSI 305
           +   G++   + +        + +   + +   + E +     G    Q     + +  +
Sbjct: 236 LLRVGQNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYV 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +    +AL+   P  G   R+   + +   T+ID+++NA P S+ AA+  L  +  
Sbjct: 296 AGLSLAEMREALADLRPAHG---RFNPLVGRNGATIIDDTFNAAPESVYAALQTLGSLPA 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421
               RRIA+LGDM E+G  S  FH    ++ +  +   +   G        +   +    
Sbjct: 353 ---RRRIAILGDMAELGAASARFHQQAGQIAAQ-HADLLITKGDQAALAATSAREASATY 408

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              I+     +   +   + + L  GD+V+VK +       ++  LL
Sbjct: 409 GYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLL 455


>gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 510

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 177/489 (36%), Positives = 243/489 (49%), Gaps = 36/489 (7%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LW   D+  A  G   G      V+G + DSR +   + F A+KG + DGH F+  A 
Sbjct: 18  TALWRAADIAAATGGKLGGG--DFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAF 75

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGK 119
            KGA   +V   +         P   V D +  L     A  ARL   A +I +TGS GK
Sbjct: 76  LKGAAGALVEQAVAH-------PHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGK 128

Query: 120 TTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T  KE L  AL  SS  + +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GE+  
Sbjct: 129 TGVKEALFAALDRSSRGRAHRSVKSYNNHVGVPLSLARMPARTRFGVFEMGMNHAGELSA 188

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LVRPH+A++TTIAPAH+ +FSG   IA AKAEIFEGLE  G   +  D     LL A
Sbjct: 189 LTRLVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEPGGVAIVPADSPHCALLVA 248

Query: 238 KSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKS-----MEVVHHGIGYH 291
            +       + +FG +++AD +L       +  + +  +   ++     +       G H
Sbjct: 249 HAQRHAGL-VITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAH 307

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYN 347
            A N L  +  V+ +  D+  A  AL+      GRG R+  A + G       LIDESYN
Sbjct: 308 WAANSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYN 367

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANPASM A I+ L         RR+AVLG M E+GE   ++H  LAE ++   I  V L 
Sbjct: 368 ANPASMSATIAALGATPA---RRRVAVLGAMRELGEGEAAYHAALAEPIAAAGIDRVVLV 424

Query: 408 GFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           G  + AL DAL ++           VH +   +       +    GD ++VK SNS G  
Sbjct: 425 GAEMAALADALGKNAQGALAAGFDMVHVATAAEAAECLAAAGPQGGDAILVKGSNSVGLG 484

Query: 459 RLINLLLEE 467
            L+  L+  
Sbjct: 485 ALVKALIAR 493


>gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 505

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 142/505 (28%), Positives = 213/505 (42%), Gaps = 49/505 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ T   L     G+ + I P   V G +  DSR IAP   F A+ G   +GHDF   
Sbjct: 1   MIPM-TAGRLADITGGYLVNIDPDAVVPGPVEFDSRKIAPGSVFLALPGARVNGHDFAAQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGAL-------------------NKLA 99
           A++ GA L +++ DM   + ++ IP V  V+    AL                   +   
Sbjct: 60  AIKDGATLALLSRDM--GVPAVIIPHVEHVETNATALEYDRDGEGEAALAALSKLAHHTV 117

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                     +I +TGS GKT+TK+M+   L +  +T A  GS+NN IG P T  R    
Sbjct: 118 TELVAHHGLRVIGVTGSAGKTSTKDMIATILRTQGETVAPPGSFNNEIGHPYTALRCTES 177

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE- 218
             F + E+    +G I  L  +  P I  +  +  AHL  F   E IA AK E+ E L  
Sbjct: 178 TRFLVAEMSARGIGHIAHLARIAPPTIGAVLNVGTAHLGEFGSREAIAQAKGELVEALPS 237

Query: 219 --KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-----------KSKNADFQLRKWKQ 265
               G   LN DD     +  ++ A     + +F               +A         
Sbjct: 238 ADDGGVAILNADDRLVSGMAPRTSA----RVITFSVKSGEAGDDPADDHDAVIATDVVLD 293

Query: 266 CSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            S ++   + +  G+S  V     G H   N L    +   +   VD    ALS  H   
Sbjct: 294 SSARASFTLTMPTGESAPVQLQVYGQHQVANALAAAAVGFAVGMSVDEIATALS--HHTA 351

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGE 383
               R      +   T+I++SYNANP SM+A I+ L+  +    + +  AVLG M E+G 
Sbjct: 352 ASANRMDVRNRRDGVTIINDSYNANPDSMRAGIAALASTVQAREDAQSWAVLGQMGELGA 411

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPR-SIHVHYSETMDGLFLFIQSS 440
            +   H  + E L  + I+HV + G  V   AL        + V + + +D     + SS
Sbjct: 412 SATDEHYSIGEELGRHQINHVVVVGNGVNQRALAHGAKDSGVDVTHVDDVDAAVDNVWSS 471

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   DVV++K+S S G +R+   LL
Sbjct: 472 VRPDDVVLIKASYSDGLWRVAEGLL 496


>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
 gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
          Length = 468

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 192/466 (41%), Gaps = 26/466 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA  V+
Sbjct: 9   IAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML   
Sbjct: 67  VD----HVLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSI 122

Query: 130 LSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L           YA  G+ NN IG+PL +   P + DF ++E+G   LG+I +LT +V P
Sbjct: 123 LEHAAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K EI+  L   GT  +N DD+F    + +    G 
Sbjct: 183 DVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    AD      +   +     +      + V     G H   N L    +  
Sbjct: 243 A-VLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMAL 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +      L +     GR   +      G   LID+SYNANP S+  AI  L+  S
Sbjct: 302 VAGIPLSQIAAGLGLARSVAGRQVAHALP---GGAVLIDDSYNANPGSLDVAIDTLTTAS 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G    VLGDM E+G    + H           ++ ++  G              +V
Sbjct: 359 ----GPGWLVLGDMRELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEGGYV 414

Query: 425 HYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
                 D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 415 --FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458


>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
           [Chlamydophila psittaci 6BC]
          Length = 436

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 206/438 (47%), Gaps = 21/438 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 14  ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQG--DSFGLELI 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 72  VVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNSQ 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT IA  H+ NF   G++
Sbjct: 132 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQ 191

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K+ I   L  +    L  D  ++     +S +    +   +   + ADF  +  +
Sbjct: 192 GIAEEKSHI---LRNSRVQLLPKDSPWYSYFMKQSVSAEKFSFAFY--DETADFYYKAIR 246

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + S    + +      ++            N+L++L +  +L   VD  I +        
Sbjct: 247 KDS----VVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPP 302

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +       +    +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G  
Sbjct: 303 MRFE----QSVRNGIQIINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGNH 356

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVD 443
           S+  H  +A    L   S ++  G   L ++  L   +  V +  +  G+   ++  +  
Sbjct: 357 SEEGHTVVANKA-LSKASIIFFIGEKWLPIRHLLKHDTCEVSFYPSAQGIEEILKKVVQQ 415

Query: 444 GDVVVVKSSNSCGFYRLI 461
           GD+V++K S S     L+
Sbjct: 416 GDIVLLKGSRSLALESLL 433


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 112/472 (23%), Positives = 197/472 (41%), Gaps = 19/472 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ Q I    IG +    ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YTIENIAQIIGARRIGEL-SATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYA 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPV-----FGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +G    VV+ + +    +L  P+       V   L AL KLA   R R +  +I ITGS 
Sbjct: 62  RGVRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I E G+S  GE+R 
Sbjct: 122 GKTVVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAILEAGISEPGEMRA 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N DD F     +
Sbjct: 182 LQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALF---KDCDVVIYNGDDEFISNCVS 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           KS     + I    +       + K ++    + +  +            I     +N L
Sbjct: 239 KS-IFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDASIENSL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L        + ++   P      R      +    LI++SYN++  S+  A+
Sbjct: 298 NCLAACLYLMLPAGQITERMAKLEPVA---MRLEVKEGKNGCLLINDSYNSDLGSLDIAL 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L + S     +R  +L D+ E G+ + + +  +A++++   I  V   G  + +    
Sbjct: 355 DFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERVIGVGNEISSCASR 414

Query: 418 LPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
              +I   +      L   I +  L  + +++++K +   GF  L  +L  +
Sbjct: 415 F--NIEKAFYPDTAALIDAIGKGELSLENEIILIKGARKFGFDALTEVLERK 464


>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
 gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci RD1]
 gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
          Length = 448

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 206/438 (47%), Gaps = 21/438 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQG--DSFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 84  VVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT IA  H+ NF   G++
Sbjct: 144 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K+ I   L  +    L  D  ++     +S +    +   +   + ADF  +  +
Sbjct: 204 GIAEEKSHI---LRNSRVQLLPKDSPWYSYFMKQSVSAEKFSFAFY--DETADFYYKAIR 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + S    + +      ++            N+L++L +  +L   VD  I +        
Sbjct: 259 KDS----VVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +       +    +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G  
Sbjct: 315 MRFE----QSVRNGIQIINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGNH 368

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVD 443
           S+  H  +A    L   S ++  G   L ++  L   +  V +  +  G+   ++  +  
Sbjct: 369 SEEGHTVVANKA-LSKASIIFFIGEKWLPIRHLLKHDTCEVSFYPSAQGIEEILKKVVQQ 427

Query: 444 GDVVVVKSSNSCGFYRLI 461
           GD+V++K S S     L+
Sbjct: 428 GDIVLLKGSRSLALESLL 445


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 116/474 (24%), Positives = 198/474 (41%), Gaps = 20/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G      ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITG 115
               +G    VV  + V    +   P      V   L AL +LA   R      ++ ITG
Sbjct: 58  ELYGRGVRNFVV--ETVPEDWNKRYPDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITG 115

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+
Sbjct: 116 SNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +++P I V T +  AH  NF  +E     K  +F     T  I  + DD      
Sbjct: 176 SALRDIIQPTIGVFTCLGSAHQENFPSLEAKCKEKLHLFH---DTQAIVYSLDDEVLNRC 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQ 294
             +    G K  +S  K + A F ++  ++   ++ +    + GK  +     I     +
Sbjct: 233 LDEYDYKGEKLCWS-AKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVE 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +        L        + ++   P      R      Q   TLI++SYN++  S+ 
Sbjct: 292 NSITCAVTALQLGVTPAALGERMAQLEPVA---MRLEVKEGQHGCTLINDSYNSDFNSLD 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +L  
Sbjct: 349 IALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQ 408

Query: 415 KDALPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + A       H+  T++      + ++L D +V+++K +   GF RL  LL+++
Sbjct: 409 RSAFRHLGKKHFFATVNAFIHSDVFANLHD-EVILLKGARQFGFDRLTELLVKK 461


>gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 140/488 (28%), Positives = 217/488 (44%), Gaps = 33/488 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ QA  G      P   V G +  DSR + P   F AI G   DG DF   
Sbjct: 1   MIEL-TASEVAQATGGRLTA-DPGVRVTGPVVADSRLVEPGALFAAIPGARVDGADFAAG 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSV 117
           AV  GA LV+   ++      +   V     D     L +L  A        + +ITGS 
Sbjct: 59  AVADGAVLVLAAREIDGLPVVVVDDVAAALGDLARVVLERLRAAN---PAVKVFSITGSA 115

Query: 118 GKTTTKEMLTIALSSIKK-----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GKTTTK++L   ++         T A  GS+N+ IG+PLT+ R        + ELG    
Sbjct: 116 GKTTTKDLLGRLVAGEAADGGSDTIAPTGSFNSEIGLPLTVLRGTAATRKLVLELGADKP 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G+I +L  +VRP IAVI  +  AH+  F   E IA AKAE+  GL   GT  LN DD   
Sbjct: 176 GDIGYLASIVRPQIAVILMVGTAHIEFFGSQEAIADAKAEVLGGLVPGGTAVLNADDERV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGK-----------S 280
             L  ++ ALG + + +FG+  +AD +       +   +   ++++G+            
Sbjct: 236 LGLAPRATALGHR-VVTFGRVPSADVRAEDVTVDATGRASFTLRVRGRVAAAGEVADDLR 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    +G H   N L       +         + LS      G   R          T
Sbjct: 295 LPVSLRLVGEHHVSNALAAATAAILAGTAPSVVAERLSAAE--PGSPHRMAVTERPDGIT 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D++YNANP SM+AA+  ++ ++     R +AVLG+M E+GE +++ H  +  ++   N
Sbjct: 353 VVDDAYNANPESMRAALRSVAVMAGRT-RRSVAVLGEMRELGEGARAAHDAIGRLVVRLN 411

Query: 401 ISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           I  + + G     + +   +         +   +D     +   L  GDVV+VK+SN  G
Sbjct: 412 IKLLVVVGDGAYHIHEGAMQEGSWGEETVFVPDLDAARAELAERLRPGDVVLVKASNGSG 471

Query: 457 FYRLINLL 464
            ++L + L
Sbjct: 472 LWQLGDEL 479


>gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS]
 gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS]
          Length = 1299

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 141/465 (30%), Positives = 222/465 (47%), Gaps = 14/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAI-KGPH--YDGHDFILHAV 61
             H+L +  QG    + P G+ +  ++   + + PQ       +      D  D +    
Sbjct: 427 NAHELAEITQGVWEVMPPDGWTMKAVAFVKKRLEPQALVLPHCRTYRYGVD-RDTVRGLN 485

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             G  L+   T +    G   +P   V  V  AL  LA+A R      I+A+TGS GKT+
Sbjct: 486 GNGYALLADATPLAFPHG---VPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTS 542

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTH 180
           T  M+   L           ++N   GV   +A +  +    + E+  S L +      +
Sbjct: 543 TCNMIEDLLQVFGVPKRPTKNFNTFDGVNGEVANLTNEA-IAVIEVAASFLSQRGGPRPN 601

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+IT+I  AHL  F   + +A  K+ +F+ + + GT  +  D   ++ +  ++ 
Sbjct: 602 VLRPEVAMITSIGEAHLEYFGSPQGVAEVKSNVFDLMSR-GTAVIPRDADTYDYMVQRAR 660

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G  T+ SFG   +AD  L  +   +    +E ++ G+ +      +G H A+N +  L
Sbjct: 661 AAGATTV-SFGAHPSADAHLLSY--SAADGVVEAEIFGERITYELGALGRHFARNSVGAL 717

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V+ L  D   A  AL+      GRG  +      G FTLID++YNANP+S++AAI +L
Sbjct: 718 GVVAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEML 777

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S+ +    GRRIAVL DM E+G  S+ FH  LAE L    I  V+L G  + AL D LP 
Sbjct: 778 SERATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPS 837

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            I   Y  T+DGL   +     DGDVV+ K SN    ++++    
Sbjct: 838 EIRGQYYPTVDGLQAALDREFADGDVVLFKGSNGTELHKVVAHFK 882


>gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
          Length = 468

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 190/466 (40%), Gaps = 26/466 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA  V+
Sbjct: 9   IAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML   
Sbjct: 67  VD----HVLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSI 122

Query: 130 LSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L           YA  G+ NN IG+PL +   P + DF ++E+G    G+I +LT +V P
Sbjct: 123 LEHAAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKSGDIGYLTDIVTP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K EI+  L   GT  +N DD+F  L   +      
Sbjct: 183 DVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGTAVINMDDAF-ALWFEQQCVPAS 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG    AD      +   +     +      + V     G H   N L    +  
Sbjct: 242 CAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMAL 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +      L +     GR   +      G   LID+SYNANP S+  AI  L+  S
Sbjct: 302 VAGIPLSQIAAGLGLARSVAGRQVAHALP---GGAVLIDDSYNANPGSLDVAIDTLTTAS 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G    VLGDM E+G    + H           ++ ++  G              +V
Sbjct: 359 ----GPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEGGYV 414

Query: 425 HYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
                 D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 415 --FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 199/467 (42%), Gaps = 14/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I  H  G      +  +  DSRS+  A +  FFA+K    DG  FI    +
Sbjct: 75  YTIERVATLIGAHRYGNR-DANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIGDLYR 133

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV             +    V + LGAL +LA   R      ++ ITGS GKT 
Sbjct: 134 RGVFNFVVEHLPDNYDTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKTM 193

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ IGVPL++  M      G+FE G+S  GE+  L  +
Sbjct: 194 VKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLMNELTQIGVFEAGISMPGEMASLRSI 253

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P I V+T I  AH  NF+ +EE  S K ++F   E    +  N DD        +S  
Sbjct: 254 IQPTIGVLTGIGTAHQENFASMEEKCSEKLKLFHDSEA---VIYNADDDLIARCMEQSGY 310

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G +  +S  K +NA   ++  ++    + +     GK  +     I      N +  + 
Sbjct: 311 KGRRMGWS-QKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPFIDSASVVNSITCMA 369

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    D   + +    P      R      Q   TLI++SYN++  S+  A+  ++
Sbjct: 370 VSLYLGLSADDLDRRMQRLEPVA---MRLEVKTGQHGCTLINDSYNSDVKSLDIALDFMN 426

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +   H   R   +L D+ + GE  +  + +++ ++    +      G  + A  D + + 
Sbjct: 427 RRPDHKGRRHTLILSDIYQSGESPRELYREVSTLVQGRGVEKFIGIGPEISAQSDEI-KV 485

Query: 422 IHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               + E++D      +  SL D +V+++K S S GF  L  LL ++
Sbjct: 486 REKFFFESVDSFISSEVFRSLRD-EVILLKGSRSFGFDLLTELLAQK 531


>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 191/455 (41%), Gaps = 22/455 (4%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G         ++ DSR I P + F A++G  +DGHDF+  A+  GA   +V+ D     
Sbjct: 21  VGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPS 80

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              +  +  VD+ L A  ++A   R R    +I ITGSVGKTTTKE++   L+       
Sbjct: 81  DLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              +YNN IGVP T+ ++  D  +  + E+GM   G+I  L  + +P+IAVIT +  AH+
Sbjct: 141 TEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHI 200

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 + IA AK E+   L  TG   LN D+     L A +  L +    ++G  +N D
Sbjct: 201 GLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIATAQRLNLPRCRTYGL-QNGD 256

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            Q +            + ++G+         G H A N L  L I   L  D +      
Sbjct: 257 LQGQLIDLE------TLVVEGQRF--RLPLPGAHNALNFLAGLAIAQELGLDWE--AFRD 306

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 +GR +R   +       L+DE+YNA   SM AA+      +           G 
Sbjct: 307 LSVTLPQGRARRIELSP---DIVLLDETYNAGLESMLAALQAFGGYAGPTPD---CSAGH 360

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLF 436
              +G   ++             +  + +       A   A   +I        + L   
Sbjct: 361 DEGIGRFQRNLPSPSWRKSGCLGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSE 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           ++ S+  GD ++ K+S S    R++   +  + A+
Sbjct: 421 LRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455


>gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 956

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 191/439 (43%), Gaps = 23/439 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +SIDSRSI P   F AIKG  YDGH ++   ++      +       +  S     + V+
Sbjct: 539 LSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFSEENSYYQVE 598

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  +  +         A  IA+TGS GKTT KE++   L S       + + NN IG+
Sbjct: 599 NCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVLKTLANENNIIGL 658

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             T+ R+  +  + IFELG +H GEI  L  +  P I +I  I P+HL  F   E +   
Sbjct: 659 CKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGIILNIGPSHLEYFGDEEGVFRE 718

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F+            DD  F+ L  +          S G ++N+D+++ + K   + 
Sbjct: 719 KITLFK--RPLALRLYPGDDFRFDYLANEG--------ISIGYNENSDYRITRHKCNKDN 768

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +                H A N    + +   L  D +    AL+    K  + + 
Sbjct: 769 QSFYLN----EDLWFLPYGAPHYAINSAFAIVLGLKLGIDKEKMQTALN----KPIQLEL 820

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +G   LI + YNANP SM+ A+    +++P       A+LGDM E+GE S  +H
Sbjct: 821 RNQVEKRGTGLLILDCYNANPYSMQKALEYWQELNPEQP--HYAILGDMLELGESSILYH 878

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLVDGDVVV 448
             ++ +L+      ++  G +         +   + +  T++ L    + +SL +  +++
Sbjct: 879 QMISAMLAEMRYEKLYTVGNYSRIYHP--EKESPIFHYNTVEELIADRKLNSLPENAIIL 936

Query: 449 VKSSNSCGFYRLINLLLEE 467
           VK S++    R+I +L  E
Sbjct: 937 VKGSHAIQLERVIPILKGE 955



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/453 (22%), Positives = 173/453 (38%), Gaps = 50/453 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I P + F  I+G ++DGH+FI  A++KGA ++V        I    IP   V 
Sbjct: 38  VQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGAAIIVCR-----EINKRDIPYIKVK 92

Query: 90  DVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   A   +A    L  K   T+I ITG+ GKTTT  +L  AL ++      IG+   +I
Sbjct: 93  DTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGTLGYYI 152

Query: 148 GVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 +                 +   VD+ + E+    L   R   + V+    + + 
Sbjct: 153 EGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEVSSHSLSLDRI--YGVKFDYCLFSN 210

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSF 250
           +   HL     +E    AK   FE   K G+I  +N  D+F   +K        K +YS 
Sbjct: 211 LGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAK-VYSL 269

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G   +A+FQ    K     S  ++  +   + V    IG    QN+ +T+  +  L    
Sbjct: 270 G-GNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSP 328

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +    +L    P +GR +R     N G F      Y   P ++   +  +  +      +
Sbjct: 329 EAIHNSLKDIPPVQGRLERVENNFNIGIFI----DYAHTPEAIDNVLKAVEDLP----HK 380

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHV 424
           RI  L  +   G+  +     + +    ++   V +S  +  +      +KD +  S   
Sbjct: 381 RILCL--IGAGGDRDKGKRPLMLKSALNHS-DVVIISDDNPRSENPERIIKDIVSSSDIF 437

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
                          I     + D+V++  K S
Sbjct: 438 LPWWIIRNRQQAISSIIRLAQEEDIVLICGKGS 470


>gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
 gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
          Length = 475

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 127/478 (26%), Positives = 195/478 (40%), Gaps = 36/478 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q + G   G         +  DSR       + A +G   DGHDF+  A
Sbjct: 1   MIQLTT-RQLAQVVGGTLAGDGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
           +  GA   +   ++  +          V DV  A  +LA           ++A+TGS GK
Sbjct: 60  LGNGAVASLAEREVPGT-------YVLVPDVQEAFARLARWMVDELPDLQVVAVTGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++L   L+    T A I SYN+ +GVPLT+ R+    ++ + E+G S  G I +LT
Sbjct: 113 TSTKDLLGQVLAEAGPTIAPIESYNSEVGVPLTVCRIEPTTEYLVAEMGASGPGHIAYLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + ++  +  AHL  F   + IA  KA I EGL   G   LN DD     +  + 
Sbjct: 173 AIAPPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEGLPADGLAVLNADDPLVAAMSER- 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE--------QSWMEVQLQGKSMEVVHHGI--- 288
             +    +  F    +   +       +E        ++   V ++G+     H      
Sbjct: 232 --VTSGEVQYFSLDADRAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPVHLRV 289

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G HMA N L  L  V  +  D   A+ ALS          R           +I++ YN
Sbjct: 290 RGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAISRW--RMEVTERPDGVMVINDGYN 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM+AA++ L  ++     R  AVL  M E+G  S + H ++    +   +  V + 
Sbjct: 348 ANPESMRAALTALRDMA--HGRRTWAVLAGMLELGPDSAARHREVGRHAAEVGVDVVLVV 405

Query: 408 GFHVLALKD--------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           G     + +        A      V      +     ++  LVD DVV+ KSS   G 
Sbjct: 406 GDTAAPIGEGVHDVSTAAGQDGPVVISVHDSEEARSVLEDQLVDQDVVLFKSSRDSGM 463


>gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 433

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 204/440 (46%), Gaps = 27/440 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   FFA+KG +++G+ F   A+Q GA  V+++    A  G        VD
Sbjct: 16  VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDGR----YILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL +L KLA   R      +I +TG+ GKTTTKE+L   LS   KTYA  G+ NNHIGV
Sbjct: 72  NVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +   +   + E+G +HL EI FL  +  P   +I+ +  AHL  F   E +   
Sbjct: 132 PLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGLISNVGKAHLEGFGSFEGVKKT 191

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ L+   GT+FL  D+     + A      I  + ++G ++  D   +  K    
Sbjct: 192 KGELYDYLQNHNGTLFLQADNPHLNEMAA---TRKISEVVTYGFAETNDVIGKLLKADP- 247

Query: 269 QSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              ++++ + K    S  V     G +  +N L  + +        +     +  + PK 
Sbjct: 248 --LLQIEWKEKDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSAEQINTGIERYTPKN 305

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   N    T+I + YNAN +SM AA+  +  I      R++ +LGDM EMG+ 
Sbjct: 306 NRSQVTKTEHN----TIIADYYNANASSMAAALDNIEVIDAS---RKVIILGDMFEMGDE 358

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S + H  + +         +   G             +   + ET +     +    V  
Sbjct: 359 SDAEHEKVVQRAKSIGADRLIFVGKAFKKQA-----YLEAEFYETSEEAKQALIDRPVIN 413

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K+S    F  L+++L
Sbjct: 414 STILLKASRGMAFEHLMDVL 433


>gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 427

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 192/436 (44%), Gaps = 29/436 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +IDSR++   + FFA  G  ++       A  KGA  V+V      +       +F V  
Sbjct: 20  TIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPARD---IFYVPS 76

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L  L +LA   R +    +IA+TGS GKTTTKE++   L+         G+ NNHIGVP
Sbjct: 77  TLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLNNHIGVP 136

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL  +    +  + E+G +H  EI  L  + +P    IT    AHL  F G E +   K
Sbjct: 137 LTLLSVRSHHNMAVIEMGANHQKEIEMLCEIAKPTYGYITNFGKAHLEGFGGFEGVIKGK 196

Query: 211 AEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           +E++  L     TI +N +D+         +  G   + +FGK  ++D+    +++ S Q
Sbjct: 197 SEMYSYLRANSQTILVNENDAI-----QVENTAGYSPVITFGK-PDSDY---LFEEVSNQ 247

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +++ ++   ++        G +   N+     +             A+  + P   R + 
Sbjct: 248 NFVGLRFGDQTA--HSQLTGSYNFTNLCAAASLGLHFGISFREIKTAIENYVPTNMRSQI 305

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +   TL+ ++YNANP+SM+ ++   ++     EG +  ++GDM E+G  S++ H
Sbjct: 306 LE----KNGKTLVLDTYNANPSSMEESLKNFNRF----EGSKTIIIGDMLELGNESEAEH 357

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + ++        V   G +   +             ++   L   ++ + ++   +++
Sbjct: 358 RRILDLAGSLAFDAVVTVGENFRRINPGSQS------YKSAQELADALKLNPINSQNILL 411

Query: 450 KSSNSCGFYRLINLLL 465
           K S      ++++ ++
Sbjct: 412 KGSRGIALEKILDFIV 427


>gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
 gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
          Length = 519

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 125/509 (24%), Positives = 201/509 (39%), Gaps = 46/509 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G    +      V G +  DSR +AP   F A+ G   DGHD   
Sbjct: 1   MIPM-TLSRIAEIVGGTLHDVDDSSTQVTGTVEFDSRKVAPGGLFLALPGARVDGHDHAE 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVD----DVLGALNKLAVAAR 103
            AV             G   +VV +       ++ +     D     VL AL  LA A  
Sbjct: 60  AAVAAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVV 119

Query: 104 LRS---------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
                         T++ +TGS GKT+TK+++   L    +  A  GS+NN +G+P T+ 
Sbjct: 120 DELATDGTPADGGLTLVGVTGSAGKTSTKDLIAALLRECGEVVAPPGSFNNELGLPWTVL 179

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R      F + E+    +G +  LT +  P I V+  +  AHL  F   E IA AK E+ 
Sbjct: 180 RADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGELV 239

Query: 215 EGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QS 270
           E L      G   LN DD     + +++ A     I   G+S++ D +        + ++
Sbjct: 240 EALPSAADGGVAVLNADDRMVAAMASRTKA----RIVFVGQSEDCDVRATDVVVDDQARA 295

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S  +     G H   N L    +       V    + L     K    +R 
Sbjct: 296 SFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLE--GTKAASARRM 353

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQS 387
                    T++++SYNANP SM+AA+  L  ++    H   R  AVLG+M E+G  S  
Sbjct: 354 EVTERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVV 413

Query: 388 FHIDLAEVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441
            H  +  +    ++S + + G      A+                          +++ L
Sbjct: 414 EHDAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAEL 473

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             GD+V+VK+S S   + +   +L   P+
Sbjct: 474 EPGDLVLVKASKSVELWTVAEAILAATPS 502


>gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
 gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
          Length = 519

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 125/509 (24%), Positives = 199/509 (39%), Gaps = 46/509 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G       P   V G +  DSR   P   F A+ G   DGHD   
Sbjct: 1   MIPM-TLSRIAEIVGGTLHDVDDPSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAE 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVD----DVLGALNKLAVAAR 103
            AV             G   +VV +       ++ +     D     VL AL  LA A  
Sbjct: 60  AAVAAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVV 119

Query: 104 LRS---------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
                         T++ +TGS GKT+TK+++   L    +  A  GS+NN +G+P T+ 
Sbjct: 120 DELAAEGSASGGGLTLVGVTGSAGKTSTKDLIAALLRERGEVVAPPGSFNNELGLPWTVL 179

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R      F + E+    +G +  LT +  P I V+  +  AHL  F   E IA AK E+ 
Sbjct: 180 RADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGELV 239

Query: 215 EGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QS 270
           E L      G   LN DD     + +++ A     I   G+S++ D +        + ++
Sbjct: 240 EALPSAADGGVAVLNADDRMVAAMASRTKA----RIVFVGQSEDCDVRATDVVVDDQARA 295

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S  +     G H   N L    +       V    + L     K    +R 
Sbjct: 296 SFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLE--GTKAASARRM 353

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQS 387
                    T++++SYNANP SM+AA+  L  ++    H   R  AVLG+M E+G  S  
Sbjct: 354 EVTERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVV 413

Query: 388 FHIDLAEVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441
            H  +  +    ++S + + G      A+                          +++ L
Sbjct: 414 EHDAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAEL 473

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             GD+V+VK+S S   + +   +L   P+
Sbjct: 474 EPGDLVLVKASKSVELWTVAEAILAATPS 502


>gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11A3]
          Length = 457

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 130/442 (29%), Positives = 202/442 (45%), Gaps = 17/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ISIDSR++   + F AI+G ++DGH F+ + + KG   VV+   M   + S   P +
Sbjct: 28  FKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVLDKGVQSVVIKKGMQRLLPSNF-PYW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D L A  KLA+  R +    IIAITGSVGKTTTKEM+   L+ + +      ++NN 
Sbjct: 87  VVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      + I
Sbjct: 147 IGVGLTILATEIEDKALVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNADFQLR-KWK 264
             AK EI + L   G + +  +D F E  LK       IK      ++K   F+     +
Sbjct: 207 TYAKCEISKYLNPEGVVIIPANDPFLEKTLKEVWKGRVIKVRILNIENKKDSFKKENNLR 266

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S   + ++    E      G+H A N L    +   L  D  +       F    
Sbjct: 267 GFYNPSNKTILIEENIFE--ISLEGFHNASNFLFAYAVAKELGIDFAS--FNKFDFAILG 322

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR K  +        T+ DESYNA+P S+KA I  L +        +  + G M E+GE 
Sbjct: 323 GRNKILKSVK----TTIYDESYNASPESVKACIKNLLE----KPRNKFFIFGSMQELGEQ 374

Query: 385 SQSFHIDLAEVLSLYNISH-VWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           S+ +H ++  +++  +I   V++    +  +  + L           +  +   I  S  
Sbjct: 375 SEKYHKEIFNLINNSDIEKCVFICDKKNEKSYTNYLKDKKKFLVLNNIKDVPKEINKSTK 434

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            GD V++K S      ++I L+
Sbjct: 435 KGDSVLIKGSRFWQLEKIIELI 456


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 201/482 (41%), Gaps = 29/482 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   + ++I    +G  P   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YSIESITESIGARRMGNAP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYITDLYA 61

Query: 63  KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +G    V++ +               M        +    V + L AL KLA   R + +
Sbjct: 62  RGVRNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHRNQFQ 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  IFE 
Sbjct: 122 IPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAIFEA 181

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 182 GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VVIYNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD F     AKS  L  + I    K       + K ++  + + +  +            
Sbjct: 239 DDEFVSNCVAKSM-LSAREIAWSRKDMERPLYISKVEKRDDCTVISYRYLDMDNTFTLPF 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    +   + ++   P      R      +    LI++SYN
Sbjct: 298 IDDASIENSLNCLAACLYLMLPAEQITERMARLEPIA---MRLEVKEGKNNCLLINDSYN 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++  S+  A+  L + S     RR  VL D+ E G+ + + +  +A++++   I  +   
Sbjct: 355 SDLGSLDIALDFLYRRSQSKGLRRTLVLSDILETGQNTPTLYRQVAQLVNSRGIERIIGV 414

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLINLLL 465
           G  + +       +I   +      L   IQ   L  + +++++K +   GF  L  +L 
Sbjct: 415 GNEISSCAARF--NIEKTFYPDTAALIRAIQRGELRLENEIILIKGARKFGFDSLTEVLE 472

Query: 466 EE 467
           ++
Sbjct: 473 KK 474


>gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
 gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
          Length = 461

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 217/469 (46%), Gaps = 30/469 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +   ++   +    +  +  + +DSR       FFA+KG   DG  ++    +KG
Sbjct: 12  FTASSIAPLLKADCLNPNGKR-IADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKG 70

Query: 65  AGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTT 122
           A  VVV     A  +  +  PV   +DVL +L++LA     R      I ITGS GK+TT
Sbjct: 71  AAAVVVPKSRAAEALARVRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTT 130

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L    + +  T    G+ N+  G+PL++  +     +G+FE+G+ H+GE+  +  ++
Sbjct: 131 KEALARITAVLGSTAKTPGNLNSEYGLPLSIFGLDETSRYGVFEMGIDHVGEMDRMVGML 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P IA++T +  +HL      E IA  KA IF  GLE     F++      +L++  +  
Sbjct: 191 KPSIALLTNVGISHLEKMGSQEIIAEQKARIFHPGLEAG---FVSSSCKHLDLIQTIAAR 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             ++  Y   +    D  L  W+   E     V             +G H+ ++++  + 
Sbjct: 248 SLVR--YDAKEISAVDLGLDGWQLTYEGHTFTV-----------KSVGRHLLEDVVGAIK 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L A+     +AL  F P  GR   +R        T+ID+SYNA+  S  + ++ LS
Sbjct: 295 VGRYLGANAGDIAEALEGFEPMHGRSFVHRS-----DVTIIDDSYNASLDSTNSILTYLS 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            +S   +G +  VLG M E+G+LS+  H  +A  ++  + +  +L G  +      L + 
Sbjct: 350 GLS--WKGSKKVVLGPMKELGKLSRQAHRMVARTVAASSFNQTYLFGSEMEEASLELKKL 407

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V Y++  + L   +Q  L  GD+ ++K+S S    RLI  +   
Sbjct: 408 GYRGQVKYTKDFEELESMVQKQLKGGDLFLLKASRSVAMERLIPSIQRR 456


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/477 (23%), Positives = 204/477 (42%), Gaps = 24/477 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G  P   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YTIETIAERISARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYS 61

Query: 63  KGAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV+ +    + S          L++    V + L AL KLA   R + +  +I 
Sbjct: 62  RGVRNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIG 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  IFE G+S +
Sbjct: 122 ITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISEM 181

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F 
Sbjct: 182 GEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKNCD---VVIYNGDDEFI 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               AKS     +  +S    +   F + K ++  + + +  +        +   I    
Sbjct: 239 SNCVAKSMLSAREIAWSRKDMERPLF-ISKVEKKEDCTVISYRYLEMDNTFILPFIDDAS 297

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    +   + ++   P      R      +    LI++SYN++ AS
Sbjct: 298 IENSLNCLAACLYLMLPAEKITERMATLEPVA---MRLEVKEGKNGCLLINDSYNSDLAS 354

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  ++++     I  +   G  + 
Sbjct: 355 LDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLAGSRGIERIIGVGSEIS 414

Query: 413 ALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
           +        I   +    + L   I +  L  + +++++K +   GF  L   L ++
Sbjct: 415 SCAARF--DIEKAFYPNTEALLRAISRGELRLENEIILIKGARQFGFDALTEELEKK 469


>gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/458 (24%), Positives = 199/458 (43%), Gaps = 34/458 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA- 76
            I      F+  +  DSR       F AIKG   DGH +I + + +     +V  D    
Sbjct: 12  LIHEGKPFFIKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNLLDENIAGFLVREDFDCK 71

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            I +         D + AL  +A   R   KA ++AI GS GKTTTKE++   L    K 
Sbjct: 72  EILAKGKSCLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGKTTTKELIAHVL--PGKV 129

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +    ++N+ IG+P  +     D+ + + E+G + L +++ LT++ + HI VI++I   H
Sbjct: 130 HKTYKNFNSQIGLPKVVITADDDIGYLVLEMGATALEDVKKLTNIAKQHIGVISSIGEEH 189

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK---S 253
           L +F  IE +     E+F+              +    +  K+     K  Y        
Sbjct: 190 LESFGSIENVVKGNFEVFDS------------PNLLSGVYPKAFHSFYKKEYGLSFCRFR 237

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            +AD +++      E +  E+      + +    +   +A++    +G+++    D    
Sbjct: 238 DDADIRVKNVYIDEEGTHFEI----MGIRLTIPVLSIGIAESAAAAVGVLASFGIDWKEL 293

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                 F   +GR +  +    +G F +ID++YNANP S+K AI  +          +I 
Sbjct: 294 KDRFESFKGVQGRMQLIK----KGPFRIIDDTYNANPVSVKNAILTIDSFKDFN---KII 346

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           VLGDM EMGE S++ H  +  +L   +I++V+L G  +    D L   +  V Y +  + 
Sbjct: 347 VLGDMLEMGEYSKALHEKVGAMLKSSHINNVYLYGSDMKYAYDVLKLSNKEVFYFDNQEE 406

Query: 433 LFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466
           L   +  SL        +++VK S       +++ L+ 
Sbjct: 407 LSFHLVKSLKQKTDTNTMILVKGSRGMKMENVVDRLVN 444


>gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11H7]
          Length = 457

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 196/464 (42%), Gaps = 15/464 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    D+L  I+    G +       ISIDSR+    + F AIKG ++DGH F+   + K
Sbjct: 5   LLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   VV+   M   +     P + V+D L A  KL +  R +    ++AITGSVGKTTTK
Sbjct: 65  GVKSVVIKKGMQKLLPDNF-PCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L  + K      ++NN IGV LT+     +    + E+GM  LG+I  L+    
Sbjct: 124 EMVGEVLKKLGKIKLSHSNFNNEIGVGLTILAADKEDKVLVLEMGMRGLGQIENLSKHSE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHAL 242
           P IAVIT I  AH+      + I  AK EI + L   G + +  +D   E  L+      
Sbjct: 184 PDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK      K +   F+ +          +   +  +         G+H A N L    +
Sbjct: 244 VIKVELLNIKDQKGSFK-KNDNLRGFYDPLNETILIEENTFKISFEGFHNASNFLFAYAV 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D +    + + F      G+       +   T+ DESYNA+P S+ A I  L  
Sbjct: 303 AKELGIDFE----SFNKFDFVSLGGRNKILKSVK--TTIYDESYNASPESVNACIKNL-- 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDA-LPR 420
                   +  + G M E+GE S+ +H ++  +++  +I    ++       +    L  
Sbjct: 355 --IGKPRNKFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCFFICDKKSEKIYTKYLKD 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    +  +   I  S   GD +++K S      ++I L+
Sbjct: 413 KKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 426

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 188/443 (42%), Gaps = 36/443 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                G+  D+R       F A+ G ++D HD+I  A Q GA  ++ N  +        +
Sbjct: 20  NVKFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGAVAIIANKSV-----DSQL 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+D   AL+ +A       K  +IAITGS GKTTTK ML   LS    T    G+ 
Sbjct: 75  PILVVNDTQTALSTIASWHLQNIKPIVIAITGSNGKTTTKNMLANILSLQAPTLKTQGNL 134

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH+GVP+TL  +     + + E+G +HLGEI  L  +V P IA++T    AH+  F G 
Sbjct: 135 NNHLGVPMTLLTLEKQHQYAVIEMGANHLGEISHLRKIVNPDIAIVTNTLDAHIGTFGGF 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +  AK EI+    K     +N    F   +    H  G   +       N D      
Sbjct: 195 DNLVKAKGEIYS---KNSKNIINTQSIFTGDVSFTPH--GNTKV----SGNNGDIFASNI 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                    ++ +  + + +  + IG H   N L     V  L  D++   + L     +
Sbjct: 246 VNNK----FDLNIHQQKISITLNLIGIHNIDNALAASACVYPLGIDINLIKQGLEATKAE 301

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR +          F +ID++YNANP S   A+  L   S    G +I VLG M E+G 
Sbjct: 302 PGRLEIIHTKQ----FRIIDDTYNANPYSTIIALKTLQNFS----GEKIIVLGTMEELGN 353

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S+ FH  + + L+  +    +  G   L             + E    L   I ++   
Sbjct: 354 YSKMFHFKIGQ-LAKKSADTFYSYGKIALHHCSI--------HFEKKQPLANHILTN-HT 403

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
              +++K S      +L++LL +
Sbjct: 404 NATILIKGSRMAKLNKLVDLLKK 426


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/476 (25%), Positives = 216/476 (45%), Gaps = 28/476 (5%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL A QG       Q    G S D+R I P E F A++G   DGHD++  A+++GA  ++
Sbjct: 7   LLAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLL 66

Query: 70  VNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V T  + S+          I    V+D   AL   A     R + TIIA+ G VGKT+ K
Sbjct: 67  VETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E +   LS    T+    +YN+ +G+PL+L R+    ++ + ELG  H GE+  L  +V+
Sbjct: 127 EAIASVLSRNYATFRSWKNYNDLLGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMVK 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA---KSH 240
           PHI ++T +AP  L  F  +E +A   +E+   L   G  +LN  D+    + A   +  
Sbjct: 187 PHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDARLVEIVAHYQQQR 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLM 298
              +  I   G  +  +    + +   E     ++ +G+  ++ +    +G      ML 
Sbjct: 247 GSAVPDIRPLGIREINE---TQIRVGWEGLSFTLEQEGEMGTLTLASRLLGRQHISTMLA 303

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I        +   +AL    P EGR              L+D+++NA+P S+ A + 
Sbjct: 304 AYRIGRACGMSAEEVSEALEQLGPIEGRLNPLPGVYE---SRLLDDTHNASPGSVLAGLQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +++ +  G+RIA+LG+M  +G     ++  + E  +   + ++ L G     + ++ 
Sbjct: 361 ALDELT-NEGGKRIAILGEMLNLGYYQDDWYEQIGEQAA-SKVDYLILRGERTALIAESA 418

Query: 419 PR----SIHVHYSETMDGLFLFIQSSL-VDGD----VVVVKSSNSCGFYRLINLLL 465
            +    S  +    T +      ++ L  +G+    VV++K S +    R+  +L+
Sbjct: 419 RQAGLASEQIELVSTHEDAAQLARAYLEREGEAGRNVVLLKGSEATRMERVTEMLM 474


>gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
 gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
          Length = 1056

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 219/463 (47%), Gaps = 12/463 (2%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            W    +  A  G  +   P G+   G+   + ++ P +    ++G + D     ++A+  
Sbjct: 597  WNAAHIAAATGGTWVRQPPHGWTAKGLCTYAPAMQPADM-VVLRG-NEDATGVPVNALIN 654

Query: 64   GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
             A      T           PV  V D + A+  +   AR R   +++A+TGS GKTT  
Sbjct: 655  RAKPAGFMTTEPDLASGQQGPVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAGKTTVV 714

Query: 124  EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             ML  ALS+         + N   GV   LA +P +    + EL +   G++     + R
Sbjct: 715  AMLAHALSAWGNVAKSNHNANLPAGVAWNLASIPWETPHVVLELAI---GKMAISARMAR 771

Query: 184  PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            P +A+ T + PAHL   S + +IA  K+ IF G+E   T  LN D   ++ +   +    
Sbjct: 772  PKVAIFTNVLPAHLGEKSTVTDIARTKSAIFLGMEPGDTAVLNRDMLEWDTVHDAASRRK 831

Query: 244  IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++ I ++G S+    QL ++   S  +   ++   + +  +    G HMA N L  L  +
Sbjct: 832  LE-IVTYGTSEECMCQLLRYDAASRHAHARIR--NREVSFLIGAAGSHMALNGLAVLAAI 888

Query: 304  SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            S+L   ++ AI  L  F    GRG+     L+    T+ID++YNANP SM+AA   L+++
Sbjct: 889  SVLGHPLEPAIAQLESFAALPGRGEEIHLLLDGRRLTVIDDAYNANPGSMRAA---LARL 945

Query: 364  SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              H  GRRIAVLG+M E+G    ++H +LA  +   +I  V+++G        AL  S  
Sbjct: 946  GDHIGGRRIAVLGEMAELGPGRAAYHTELAAFIQDRSIDEVYVTGDLYSDFWKALSPSSR 1005

Query: 424  VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              Y+E+   L   ++  LVDGD V+ K S+S G + L+  L  
Sbjct: 1006 GLYAESRQALKEILRERLVDGDTVLFKGSHSTGMHELVEWLKN 1048


>gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 456

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 196/441 (44%), Gaps = 16/441 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              IS+DSR+I  +E F AIKG ++DGH+F+   ++KG   VV+   M   +     P +
Sbjct: 28  FKNISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGVKAVVIKEGMQNLLPYKF-PFW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  KLA+  R +    ++ ITGSVGKTTTKEM+   L  + K      ++NN 
Sbjct: 87  TVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLSQLNFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+          I E+GM  LG+I  L+    P IAVIT I  +H+      E I
Sbjct: 147 IGVGLTILDSDFKDKTLILEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265
             AK EI + L   G + +  +D F E    ++    I  +    K++ A        + 
Sbjct: 207 TYAKCEITKHLNPKGVVIIPANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSLNKTNLQG 266

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +S   V ++ K  E+     G+H A N L    +   L           + F+    
Sbjct: 267 FYNRSNNSVIIEDKIFEISFQ--GFHNAFNFLFVYAVAKELGIKFKD----TNKFNFVSL 320

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+       +   T+ DE+YNA+P S+KA I+ L     +       + G M E+G  S
Sbjct: 321 NGRNKILKSKK--TTIYDETYNASPESVKACINNLLDNPNNH----FLIFGSMQELGNKS 374

Query: 386 QSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           Q +H DL E++   +I            +   D L +S    +   ++ +   I      
Sbjct: 375 QKYHKDLFELIDRSDIKKCIFICDKNDEIYYADYLKKSTKFLFLNEINKVGETINKYTKM 434

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           GD +++K S      ++I  +
Sbjct: 435 GDFILIKGSRCWHLEKVIKSI 455


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 206/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G  P   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YTIETIAERIGARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYS 61

Query: 63  KGAGLVVVNTDMVASIGSLS----------------IPVF---GVDDVLGALNKLAVAAR 103
           +G    VV+ +   +I +                  IP      V + L AL KLA   R
Sbjct: 62  RGVRNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLAEQHR 121

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            + +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  
Sbjct: 122 EQFQIPVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELA 181

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           IFE G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +
Sbjct: 182 IFEAGISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VV 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD F     AKS     +  +S    +   F + K ++  + + +  +        
Sbjct: 239 IYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLF-ISKVEKKEDCTVISYRYLEMDNTF 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +   I     +N L  L     L    +   + ++   P      R      +    LI+
Sbjct: 298 MLPFIDDASIENSLNCLAACLYLMLPAEKITERMTTLEPVA---MRLEVKEGKNGCLLIN 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  ++++++   I  
Sbjct: 355 DSYNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLINSRGIER 414

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLI 461
           +   G  + +        I   +    + L   I +  L  + +++++K +   GF  L 
Sbjct: 415 IIGVGNEIASCAARF--DIEKAFYPNTEALLRAISRGELRLENEIILIKGARQFGFDALT 472

Query: 462 NLLLEE 467
             L ++
Sbjct: 473 EELEKK 478


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/475 (23%), Positives = 201/475 (42%), Gaps = 22/475 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++  ++++ I    IG V    ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YSIENIVEIIGAQRIGNV-SATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYA 61

Query: 63  KGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +G    VV+ + +                    V + L AL KLA   R + +  +I IT
Sbjct: 62  RGVRNFVVSKESMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVIGIT 121

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKT  KE L   LS+ +       SYN+ IGVPL++ +M       IFE G+S  GE
Sbjct: 122 GSNGKTIVKEWLHQLLSAERVIVRSPRSYNSQIGVPLSVWQMNEQSGLAIFEAGISEPGE 181

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F   
Sbjct: 182 MRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEFISN 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             AKS  L  + I    K       + K ++  + + +  +            I     +
Sbjct: 239 CVAKSM-LSAREIAWSRKDMERPLYIGKVEKKDDCTVISYRYLDMDNTFTLPFIDDASVE 297

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L     L    +   + +    P      R      +    LI++SYN++  S+ 
Sbjct: 298 NSLNCLAACLYLMLPAEKITERMGRLEPVA---MRLEVKEGKNGCVLINDSYNSDLGSLD 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A++ L + S     +R  +L D+ E G+ + + +  +A++++   I  +   G  +   
Sbjct: 355 IALNFLYRRSLSNGLKRTLILSDILETGQNTSTLYRQVAQLVNSRKIERIIGVGSEISTC 414

Query: 415 KDALPRSIHVHYSETMDGLF-LFIQSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
                 +I   +    D L    ++  L  + +++++K +   GF  L  +L ++
Sbjct: 415 AARF--NIENAFYPNTDALMNAVVKGKLRLENEIILIKGARKFGFDALTEVLEKK 467


>gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
 gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
          Length = 478

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 214/475 (45%), Gaps = 23/475 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  D++++     +    +     + IDSR +     F A  G   DG+ +I  A+  G
Sbjct: 4   MSARDVVESTGAMLLVEGKRPLAGEVEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGV------DDVLGALNKLAVAAR-LRSKATIIAITGSV 117
           A +V  + +   +    +  V         DD    L +LA A R L    T++A+TGSV
Sbjct: 64  AAVVCASVEPAQATLEHARRVDATLLRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSV 123

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+ML   +++ ++ +A  G++NN IG+P+T+   P D +  + E GM+H GEI  
Sbjct: 124 GKTTTKDMLRAGIATQRRVHATAGNHNNLIGLPMTILSAPKDAEVLVCECGMNHKGEILR 183

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIFLNYDDSFFE 233
           LT   RP IAVIT +  +H+      E IA AKAEI EG+E  G    T+ L     F  
Sbjct: 184 LTRCCRPTIAVITNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGGDFTS 243

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYH 291
            +  K        +   G       + +      E   +   V   G    V     G  
Sbjct: 244 FVSEKFARPKGIDVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRV 303

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              + LM L  +++L  D D A+ A++          R           +ID+SYNA+P+
Sbjct: 304 AVSDALMALEAITLLGLDRDMALDAIATM---PPTRMRLSVLHAVCGARIIDDSYNASPS 360

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
           SM AA+ VLS++     GRRIA+LG++ E+G+  +  H  +   ++   I  V   G   
Sbjct: 361 SMAAALDVLSRMPTR--GRRIAILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFVGKDA 418

Query: 411 VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              + +A          +   E+++ +   I   L D D V+VK+S + G    +
Sbjct: 419 AREMAEAAKTMGLSEDAIELVESVEDVMKIIPPILKDTDTVLVKASRAAGLDAFV 473


>gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 454

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 126/468 (26%), Positives = 199/468 (42%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ +AI     G       +G ++DSR++   E FFA++G   DG DF         
Sbjct: 5   TLSEISRAIGARLHGTDGGERAHGAAVDSRAVRGGELFFALRG-RLDGADFAPD------ 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKE 124
                      +   L +P   V+D L AL +LA    R  + AT++ ITG+VGKTTTK+
Sbjct: 58  -ARARGAVAAVADRPLEVPTLVVEDPLRALQELARWSLRREASATVVGITGTVGKTTTKD 116

Query: 125 MLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            L   L S   K  A  G+ NN IG+PLT+     D +  + E+G +H G+I FL  + R
Sbjct: 117 ALATILRSAGRKITATQGNLNNEIGLPLTVLNAAPDTEVMVLEMGATHPGDIAFLCGIAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+ V+T I+P HL +F  ++++A  K E+   L + G               A      
Sbjct: 177 PHVGVLTAISPVHLDSFGSLQKLAETKGELARSLPEDGAFV----SPVGVPEAAVGGGRA 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG  + A       ++  E     V   G+S  V     G H+ + +L   G  
Sbjct: 233 FGRHITFG-DEGASLWASGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++   + LS        G R      +    L D+SYNA+PA+M A +   ++ 
Sbjct: 292 LALGVALEECARGLSRLRRT---GLRGDLLRLRDDILLYDDSYNASPAAMAAVLRYGARQ 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     R +AVLG M E+G  ++ +H +   + +   +  +   G       +A      
Sbjct: 349 ASSSGRRLVAVLGGMFELGPGAREYHREAGRLAAEVGVDLLVCVGEEAGWYAEAF-DGEK 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           V Y +  +     +   L  GD V+VK S       L   L E    +
Sbjct: 408 VLYRDAGEAARE-LPHLLRPGDYVLVKGSRGVRLDTLTGRLKESLAVV 454


>gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 424

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 201/440 (45%), Gaps = 31/440 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I  D+RSI P   FFA+KG  ++G+ F L A++ GA   VV+ ++          +  V
Sbjct: 12  SICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDENVGDDER-----LIKV 66

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL A+   A+  R       I +TGS GKTTTKE+    L +  K +A  G++NNHIG
Sbjct: 67  SDVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGNFNNHIG 126

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+   P + +  I E+G +H  EI  L  +  P +  IT    AHL  F G+E I  
Sbjct: 127 VPLTILSAPKETEMLIVEMGANHQKEIGQLASIAEPTLGYITNYGKAHLEGFGGVEGIIK 186

Query: 209 AKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            K+E+++ +   + G   +N DD+       +          +FGK+ NA F     ++ 
Sbjct: 187 GKSELYDYIAQNEEGVALVNADDAI------QLEKSAACRRTTFGKT-NAQFTYT-VEEK 238

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E + ++  +   S  +  +  G     N+   + +           ++AL+ + P   R
Sbjct: 239 DEFAGIQFSIATASYTIQSNLSGSFNCTNLAAAVALGRYCDVPAPAIVQALTDYLPAMNR 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   NQ    ++ ++YNANP SM  +I   ++   H +G    VLGDM E+GE S 
Sbjct: 299 VEWRKTPSNQ----VLLDAYNANPTSMSLSIENFAKW--HKDG--WLVLGDMFELGEESA 350

Query: 387 SFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + H  + +++   N+     L G H          S       T   L  + + +    D
Sbjct: 351 AEHRAIVKLVQRINMEERCILVGKHFG------RTSWRGKQFPTTGDLKTYWKENGAPKD 404

Query: 446 -VVVVKSSNSCGFYRLINLL 464
             +++K S      +L+ LL
Sbjct: 405 AAILLKGSRGIALEQLLPLL 424


>gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 457

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 194/442 (43%), Gaps = 17/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ISIDSR++   + F AIKG ++DGH F+   + KG   VV+   M   + S   P +
Sbjct: 28  FKNISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKGMQRLLPSNF-PYW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  KLA+  R +    I+AITGSVGKTTTKEM+   L+ + +      ++NN 
Sbjct: 87  VVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      + I
Sbjct: 147 IGVGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWK 264
             AK EI + L   G + +  +D F E    +S    +  +         +   +    +
Sbjct: 207 THAKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLR 266

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S   + ++  + E      G+H A N L    +   L  D      + + F    
Sbjct: 267 GFYNPSKKTILIEENTFE--ISLEGFHNASNFLFAYAVSKELGIDFA----SFNKFDFVS 320

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G+       +   T+ DESYNA+P S+KA I  L +        +  + G M E+G+ 
Sbjct: 321 FGGRNKILKSLK--TTIYDESYNASPESVKACIKNLLE----KPRNKFFIFGSMQELGKE 374

Query: 385 SQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           S+ +H ++  +++  +I          +     + L           +  +   I  S  
Sbjct: 375 SEKYHKEIFNLINNSDIEKCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTK 434

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            GD +++K S      ++I L+
Sbjct: 435 KGDSILIKGSRCWQLEKIIELI 456


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 112/485 (23%), Positives = 203/485 (41%), Gaps = 32/485 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   + ++I    +G VP   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YSIESITESIGARRVGNVP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIADLYA 61

Query: 63  KGAGLVVVNTD------------------MVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           +G    V++ +                        S ++    V + L AL KLA   R 
Sbjct: 62  RGVRNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAEQHRN 121

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I
Sbjct: 122 RFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAI 181

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           FE G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    + 
Sbjct: 182 FEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLFKNCD---VVI 238

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD F     AKS     +  +S    +     + K ++  + + +  +         
Sbjct: 239 YNGDDEFVSNCVAKSMLSAREIAWSRKDMERP-LYISKVEKQDDCTVISYRYLDMDNTFT 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              I     +N L  L     L    +   + ++   P      R      +    LI++
Sbjct: 298 LPFIDDASIENSLNCLAACLYLMLPAERITERMAKLEPIA---MRLEVKEGKNNCLLIND 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYN++  S+  A+  L + S     RR  +L D+ E G+ + + +  +A++++   I  +
Sbjct: 355 SYNSDLGSLDIALDFLYRRSQSKGLRRTLILSDILETGQNTPTLYRQVAQLVNSRGIERI 414

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLIN 462
              G  + +       +I   +      L   IQ   L  + +++++K +   GF  L  
Sbjct: 415 IGVGNEISSCAARF--NIEKTFYPDTAALIRTIQRGELRLENEIILIKGARKFGFDSLTE 472

Query: 463 LLLEE 467
           +L ++
Sbjct: 473 VLEKK 477


>gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 450

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 201/466 (43%), Gaps = 20/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G           +D R   P   F A  G   DGHDF   A
Sbjct: 4   MIPL-SLGEIAVVVDGTVEGDGAVMVTAPAVLDGRQAEPGGLFVAFAGDRVDGHDFAEQA 62

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA  V+ +     S       V              V  RLR   T+  +TGS GKT
Sbjct: 63  GEAGAVAVLGSRPTSLSTV-----VVKDVQAAVQALAAYVVGRLRDGLTVAGLTGSQGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK++L   +SS   T A + S+NN IGVP+T+ R      F + E+G   +G+I  LT 
Sbjct: 118 STKDLLATVVSSTAPTIAAVDSFNNEIGVPVTMLRADAASRFLVLEMGARRVGDIADLTG 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +AV+  +  +HLS F   + IA AK E+  GL   GT  LN DD     +++ ++
Sbjct: 178 LVAPDVAVVLNVGQSHLSYFGSRQAIAKAKGELVRGLAPGGTAVLNADDPVVVAMRSLTN 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + +FG +++AD ++         +    ++    S  V    +G H A N    
Sbjct: 238 G----PVLTFGYAEHADVRVVDLTLDRLSRPSFTLRTADGSAFVELPLVGAHQAHNASAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +         +D A  AL+     +    R          TL+++S+N+NP S +AA+  
Sbjct: 294 VAAGLAAGVPLDVAASALATASLSKW---RMELRELDSGATLLNDSFNSNPDSTRAALDA 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ I     GRRIAVLG+M E+G+  +S H    E  +      V + G   L    A  
Sbjct: 351 LAGI---EGGRRIAVLGEMLELGDDHESEHRAAGEYAAARADVVVAVGGIASLVADGA-- 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      D    +++  +  GDVV+VK+S       +   L+
Sbjct: 406 -GDSAVALPDNDAAIDWLRGHITAGDVVLVKASRGVFLDEVAAALV 450


>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
 gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
          Length = 473

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 194/460 (42%), Gaps = 23/460 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++++ +       V  G   V  +  DSR   P   F  I G   DGHD+   AV++G
Sbjct: 5   LAEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+        +  LS+PV  V D + AL  +A   R +S A ++ ITGS GKTT KE
Sbjct: 65  AVAVLAAR----PLEGLSVPVLLVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKE 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS   KT     + NN +G+PL + +   D DF +FE G+SH G++  L  +++P
Sbjct: 121 LLAHVLSRRGKTACNALNLNNQVGMPLCMLKTDGDEDFWVFEAGISHEGDMDELGAILQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+I  +  AH         +A  K+ +   L   G   ++ D  + +L++      G 
Sbjct: 181 DLALILNVGAAHTEGLGER-GVAWHKSRLLAHLAPEGQALVSAD--YDDLVREARAVFGD 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              ++      +                 + L G+  +V+    G +  +N +       
Sbjct: 238 VLFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPCDVIAPFRGDYGTENCIAVAAAAH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +      +       R  R R    +G + ++D++YNANP SM   +   ++ +
Sbjct: 298 MLGLTAEEIAAGFADAQLPPQRFARSR----RGNWDIVDDTYNANPLSMARMLDAAAESA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  + VLG+M E+G ++   H  L   L+      V+  G H  A++D L   ++ 
Sbjct: 354 QKRPF--VVVLGEMRELGGVADREHERLGRHLAQLRPVLVFWRGGHADAVRDGLEHGLYT 411

Query: 425 HYS---ETMDGLFLFIQSSLVD-----GDVVVVKSSNSCG 456
                 ++ +     ++  L       G +++ K S    
Sbjct: 412 GKFLPVDSGEAFVQALREHLPADTGEQGGLMLFKGSRGNH 451


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 116/474 (24%), Positives = 199/474 (41%), Gaps = 20/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G   +  ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITG 115
               +G    VV  + V    +   P      V   L AL +LA   R      I+ ITG
Sbjct: 58  ELYGRGVRNFVV--ETVPEDWNRRYPDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITG 115

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+
Sbjct: 116 SNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +++P I V T +  AH  NF  ++     K  +F     T  I  + DD      
Sbjct: 176 SALHDIIQPTIGVFTCLGSAHQENFPSLDAKCREKLHLFH---DTQAIVYSLDDEVLNRC 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQ 294
             +    G K  +S  K + A F ++  ++   ++ +    + GK  +     I      
Sbjct: 233 LDEYDYKGEKLCWS-AKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVV 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +        L        + +++  P      R      Q   TLI++SYN++  S+ 
Sbjct: 292 NSITCAVTALQLGVTPAALGERMALLEPVA---MRLEVKEGQHGCTLINDSYNSDFNSLD 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +L  
Sbjct: 349 IALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQ 408

Query: 415 KDALPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + A       H+  T++      + ++L D +V+++K +   GF RL  LL+++
Sbjct: 409 RSAFRHLGKKHFFATVNAFIHSDVFANLHD-EVILLKGARQFGFDRLTELLVKK 461


>gi|229083523|ref|ZP_04215861.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
 gi|228699777|gb|EEL52424.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
          Length = 335

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 163/343 (47%), Gaps = 11/343 (3%)

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS LGEI FL+ L RP+
Sbjct: 1   MTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSLGEIEFLSKLARPN 60

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    + IA AK EI  GL+  G    N D+      +  +  L  +
Sbjct: 61  AAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQNGGVFVYNGDEPLLTN-RVPNMNLAAE 119

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           TI +FG ++  D+        +  ++ ++  Q K        +G H   N L ++ I   
Sbjct: 120 TI-TFGDARANDYYPTSVTLQATGTYFKMN-QDKDTVFYLPVLGKHNVYNTLASMAIAKY 177

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L         G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 178 FGVTWEEMKQGLVTLQMT---GMRMEIVKTNNGLTVINDAYNASPTAMEAAFHLMNGLDG 234

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
               +++ VLGDM E+G+    FH ++ +++    IS+V+  G     + +         
Sbjct: 235 F--AKKVVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPKE 292

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 293 RVKVYDNKEELVKELQTVIDEKDVVLVKASRGMKLEEIITMLK 335


>gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 457

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 193/442 (43%), Gaps = 17/442 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ISIDSR+    + F AIKG ++DGH FI   + KG   VV+   M   + S   P +
Sbjct: 28  FKNISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKGVKSVVIKKGMQRLLPSNF-PYW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  KLA+  R +    I+AITGSVGKTTTKEM+   L+ + +      ++NN 
Sbjct: 87  AVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      + I
Sbjct: 147 IGVGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWK 264
             AK EI + L   G + +  +D F E    +S    +  +         +   +    +
Sbjct: 207 THAKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLR 266

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S   + ++  + E      G+H A N L    +   L  D      + + F    
Sbjct: 267 GFYNPSKKTILIEENTFE--ISLEGFHNASNFLFAYAVSKELGIDFA----SFNKFDFVS 320

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G+       +   T+ DESYNA+P S+KA I  L +        +  + G M E+G+ 
Sbjct: 321 FGGRNKILKSLK--TTIYDESYNASPESVKACIKNLLE----KPRNKFFIFGSMQELGKE 374

Query: 385 SQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           S+ +H ++  +++  +I          +     + L           +  +   I  S  
Sbjct: 375 SEKYHKEIFNLINNSDIEKCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTK 434

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
            GD +++K S      ++I L+
Sbjct: 435 KGDSILIKGSRCWQLEKIIELI 456


>gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 430

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 206/436 (47%), Gaps = 22/436 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +SR       FFA++G  +DG+D+I+ A+  GA   V + + +         +  V 
Sbjct: 16  ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDRNDLPENER----IIKVG 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L  LA   R    A IIAITG+ GKTTTKE++   LSS  KT     + NN+IGV
Sbjct: 72  NVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLSSKYKTLYTQENLNNYIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +  F + E+G SH+ EIR L  +  P   +IT +  AHL  F  ++ +  A
Sbjct: 132 PLTLLRLNSEHQFAVIEMGASHVNEIRMLCQIAEPDYGIITNVGKAHLEGFGSLDGVVKA 191

Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E+++ +  K G +F N D+   +            ++  +G +  A    R       
Sbjct: 192 KTELYDFIRDKGGVVFANLDNLILKEW------YNSFSVIYYGTTSKAFVYGRMIGFDP- 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +E        ++V H +G +  +N+L ++ + +    +       ++ + P   R +
Sbjct: 245 TLVLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRINVVIANYIPINNRSQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N     LI ++YNANP SM+ A+    ++       ++ +LG+M E+G  S+  
Sbjct: 305 NCKTKKNN----LIVDAYNANPDSMRVALDNFYKLRISP---KMVILGEMGELGSYSKEE 357

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +   L    +  V+L G +       LP S    + +T +    +++ + V+G  ++
Sbjct: 358 HQKVLNSLWGSKVDKVFLIGRNFEEC--LLPCSGWKLFRQT-EDCLEYLRMTSVEGYHIL 414

Query: 449 VKSSNSCGFYRLINLL 464
           +K S +    ++ + L
Sbjct: 415 IKGSRNNQLEKIFHYL 430


>gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanyl ligase MurF [Mycobacterium
           tuberculosis H37Rv]
 gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium
           bovis AF2122/97]
 gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis GM 1503]
 gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis K85]
 gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis 210]
 gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Rv]
 gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis AF2122/97]
 gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis W-148]
          Length = 510

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 133/511 (26%), Positives = 206/511 (40%), Gaps = 53/511 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G   DGHD
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-------------------ALN 96
               AV  GA +V+        + ++ +P     +VL                     L 
Sbjct: 60  HAASAVAAGAAVVLAAR--PVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLA 117

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
               A  +    TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R 
Sbjct: 118 TAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRA 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + 
Sbjct: 178 TRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQA 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           +  +G + LN DD     +   + A     +    +    D            +    + 
Sbjct: 238 VPHSGAVVLNADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLH 293

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 EV     G H   N L    +     A V+    AL+   P      R +    
Sbjct: 294 AHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTR 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
               T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  + 
Sbjct: 352 GDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIG 411

Query: 394 EVLSLYNISHVWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLF 436
            +    ++S + + G        H  A+ +    S                   D     
Sbjct: 412 RLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 471

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 472 LRAELRPGDVVLVKASNAAGLGAVADALVAD 502


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 185/468 (39%), Gaps = 13/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           ++T   +   I     G      +  I  DSRS+    +  FFA+K    DGH +IL   
Sbjct: 2   IYTIEKVTTLIGARRFGST-DAKIGFILTDSRSLCFPEETLFFALKSGRNDGHRYILELY 60

Query: 62  QKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +G    VV       +          V D L +L +LA   R      I+ ITGS GKT
Sbjct: 61  HRGVRNFVVTEVPANYASDYPQANFLKVVDSLESLQRLAERHRDEFNIPIVGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS          SYN+ +GVPL++  +      G+FE G+S  GE+  L  
Sbjct: 121 MVKEWLNQLLSDDLFVTRSPRSYNSQVGVPLSVWLLNEHSQVGVFEAGISQPGEMLVLRD 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P IAV+T +  AH  NF   E     K  +F        +  N DDS          
Sbjct: 181 IIQPTIAVLTNLGDAHQENFVSREAKCKEKLVLFH---DAKIVVYNGDDSLISDCVNALE 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + +Y      NA F ++  ++ +  + +    +G         I      N     
Sbjct: 238 DFRGERLYWSCSDHNAPFFVKSIEKKATATTITYIYKGIESWYSLPFIDDASITNSFACA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    D   + +    P      R      Q   TLI++SYN++  S+  A+  +
Sbjct: 298 AVALTLGVSKDALDERMLQLEPIA---MRLEVKQGQHGCTLINDSYNSDINSLDIALDFM 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++   H   R   +L D+ + G  ++  + ++ ++     I      G  + +    +  
Sbjct: 355 NRRPDHQGRRHTLILSDIYQSGMTTEELYKEVGKLCQQRGIEKFIGVGKELQSHAGLITI 414

Query: 421 SIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                + E ++ L    +   L D +V+++K +   GF +L  LL+++
Sbjct: 415 KDKF-FFENVENLIESDVFKQLHD-EVILIKGARRFGFDQLTELLVQK 460


>gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 370

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 16/382 (4%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     +
Sbjct: 2   LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASN 61

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  
Sbjct: 62  FNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGS 121

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLR 261
           +  +A AK EI+ GL + G   +N D++ +   ++    +G + ++ F  +  N+DF   
Sbjct: 122 LAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDRQVWRFSPNAANSDFTAA 178

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S  +   +Q    S++V+    G H   N L    +   + A +      L+   
Sbjct: 179 NIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALK 238

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+
Sbjct: 239 AVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAEL 291

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S++ H+ + E      I  V  +G     +  A   S    +      L   + + L
Sbjct: 292 GAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVGEHFADKAALIARLHALL 348

Query: 442 VDG--DVVVVKSSNSCGFYRLI 461
            +     ++VK S S     ++
Sbjct: 349 QEQPMMTILVKGSRSAAMEDVV 370


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/478 (23%), Positives = 203/478 (42%), Gaps = 25/478 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   + +++    +G VP   ++ +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YSIESITESMGARRVGSVP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYA 61

Query: 63  KGAGLVVVNTDMVASIGS-----------LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           +G    VV+ +    I S             +    V + L AL KLA   R + +  +I
Sbjct: 62  RGVRNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKT  KE L   +S  +       SYN+ IGVPL++ +M    +  IFE G+S 
Sbjct: 122 GITGSNGKTIVKEWLHQLISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISE 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F
Sbjct: 182 PGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFKNCD---VVIYNGDDEF 238

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                AKS     +  +S    +     + K ++  E + +  +            I   
Sbjct: 239 ISNCVAKSMLSAREIAWSRKDMERP-LYISKVEKKEECTVISYRYLDMDNTFTLPFIDDA 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L  L     L    +   + ++   P      R      +    LI++SYN++  
Sbjct: 298 SIENSLNCLAACLYLMLPAEKITERMAKLEPVA---MRLEVKEGKNGCLLINDSYNSDLG 354

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S+  A++ L + S     +R  VL D+ E G+ + + +  +A++++   I  +   G  +
Sbjct: 355 SLDIALNFLYRRSLVNGLKRTLVLSDILETGQNTPTLYRQVAQLVNSRGIERIIGVGNEI 414

Query: 412 LALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
                     +   +    + L   I +  L  + +++++K +   GF  L  +L ++
Sbjct: 415 ATCAARF--DVEKSFYPDTNTLIRAIERGELRLENEIILIKGARKFGFDALTEVLEKK 470


>gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 457

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 133/462 (28%), Positives = 208/462 (45%), Gaps = 17/462 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L  I+    G         ISIDSR+I   + F AIKG  +DGH F+   ++KG  
Sbjct: 8   LKNVLGDIKNLKEGGEDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKGVK 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV+   M  S+  +  P + V+D L A  KLA+  R +    I+AITGSVGKTTTKEM+
Sbjct: 68  SVVIKKGMQKSLP-IDFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMM 126

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  + +      ++NN IGV LT+    V+    + E+GM  LG+I  L+    P I
Sbjct: 127 GEVLKKLGRIKLSYSNFNNEIGVGLTILDTDVEDKVLVLEMGMRGLGQIENLSKYSEPDI 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGIK 245
           AVIT I  AH+      + I  AK EI + L   G + +  +DS  E  LK       IK
Sbjct: 187 AVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDSLLEETLKEFWKGRVIK 246

Query: 246 TIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                 +++N  F +    +     S   + +Q  + E      G+H A N L   G+  
Sbjct: 247 VELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFE--ISFGGFHNASNFLFAYGVAK 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      + + F+     G+       +   T+ DESYNA+P S+KA I  L +  
Sbjct: 305 ELGIDF----SSFNKFNFASLGGRNKILKSVK--TTIYDESYNASPESVKACIKTLLEKP 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSI 422
            +       + G M E+GE S+ +H ++  +++  +I          +     + L  + 
Sbjct: 359 RNQ----FFIFGSMQELGEESEKYHKEIFNLINNSDIEKCLFICDKKNERIYANYLKDNK 414

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +  +   I  S   GD +++K S      ++I L+
Sbjct: 415 KFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
 gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
          Length = 448

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 207/439 (47%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDS+ + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQG--DSFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 84  VVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLLSSVYRVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT I   H+ NF   G++
Sbjct: 144 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNFPDQGVQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K++I   L  +    L  D  ++     +S +    +   +   + ADF  +  +
Sbjct: 204 GIAEEKSQI---LCNSRVQLLPKDSPWYPHFIKQSMSAEKFSFAFY--DETADFYYKVIR 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + S    + +      ++            N+L++L +  +L   VD  I +        
Sbjct: 259 KDS----VVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +       +    +I+++YNA P +M AA+  +    P   G+ I +LG M E+G  
Sbjct: 315 MRFE----QSIRNGIQIINDAYNACPEAMLAALDAIPH--PSEGGKVILILGHMAELGNY 368

Query: 385 SQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
           S+  H  +A + LS  NI  ++  G   L ++  +      V +  +  G+   ++  + 
Sbjct: 369 SEEGHTVVANKALSKANI--IFFIGEKWLPIRHLVKHGACEVSFYPSAQGIEEMLKKVVQ 426

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GD+V++K S S     L+
Sbjct: 427 QGDIVLLKGSRSLALESLL 445


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/467 (22%), Positives = 183/467 (39%), Gaps = 13/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G      +  +  DSRS+    +  FFA+K    DGH +I    +
Sbjct: 35  YTIEKVTTLIGARRFG-ASDAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYR 93

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV       +          V + L AL +LA   R      I+ ITGS GKT 
Sbjct: 94  RGVRNFVVTEVPADYATEYAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSNGKTM 153

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   L           SYN+ +GVPL++  +      GIFE G+S  GE+  L  +
Sbjct: 154 VKEWLNQLLCDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEAGISQPGEMLALRDI 213

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P IAV+T +  AH  NF   E     K  +F       T+  N DD        +   
Sbjct: 214 IQPTIAVLTNLGDAHQENFISKEMKCKEKLILFH---DAKTVVYNGDDPIVNGCVNELED 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++   K K A F ++  ++    + +    +G         I      N      
Sbjct: 271 FKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSFACAA 330

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L   VD            E    R      Q   TLI++SYN++  S+  A+  ++
Sbjct: 331 VALTLGVGVD---VLDERMQQLEPIAMRLEVKQGQHGCTLINDSYNSDINSLDIALDFMN 387

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +   H   R   +L D+ + G  +   + ++  +     +      G  + +    +   
Sbjct: 388 RRPDHQGRRHTLILSDIYQSGMTTDELYQEVGMLCQQRGVEKFIGVGKDLQSHAHCIGVK 447

Query: 422 IHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              ++ E+++ L    +   L D +V+++K +   GF +L  LL+++
Sbjct: 448 AK-YFFESVEELIDSDVFKQLHD-EVILIKGARRFGFDQLTELLVQK 492


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 200/472 (42%), Gaps = 16/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G   +  ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-TKEANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV                  V   L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYARGVRNFVVEVVPDNWETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNENTQVGVFEAGISKPGEMMA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V T++  AH  NF  IE     K  +F     T  I  + DD       A
Sbjct: 178 LRDIIQPTIGVFTSLGTAHQENFPSIEAKCKEKLCLFH---DTQAIVYSMDDDVLTHCLA 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNM 296
           + +  G +  +S  K  +A F ++  ++   ++ +    + GK  +     I     +N 
Sbjct: 235 QYNYQGEQLSWS-TKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPFIDDASVENS 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +   L        + ++   P      R      Q   TLI++SYN++  S+  A
Sbjct: 294 ITCAVVALHLGVTQAALAERMAQLEPVA---MRLEVKEGQHGCTLINDSYNSDYNSLDIA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  +++   H   +R  +L D+ + GE  +  +  +A +     +      G  +LA ++
Sbjct: 351 LDFMNRRPDHKGRKRTLILSDILQSGEDDKELYNKVAFLCEKRGVDKFIGIGEGLLAERN 410

Query: 417 ALPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+  T++      + ++L D +V+++K +   GF  L  LL+++
Sbjct: 411 AFKHLGEKHFFATINAFIHSEVFANLHD-EVILLKGARQFGFDHLTELLVKK 461


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 184/468 (39%), Gaps = 15/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G      +  +  DSRS+    +  FFA+K    DGH +I    +
Sbjct: 3   YTIEKVTTLIGARRFG-ASDAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYR 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV       +          V D L AL +LA   R      I+ ITGS GKT 
Sbjct: 62  RGVRNFVVTEVPADYATEYAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   L           SYN+ +GVPL++  +      GIFE G+S  GE+  L  +
Sbjct: 122 VKEWLNQLLCDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEAGISQPGEMLALRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P IAV+T +  AH  NF   E     K  +F       T+  N DD        +   
Sbjct: 182 IQPTIAVLTNLGDAHQENFISKEMKCKEKLILFH---DAKTVVYNGDDPIVNGCVNELED 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++   K K A F ++  ++    + +    +G         I      N      
Sbjct: 239 FKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSFACAA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L   VD            E    R      Q   TLI++SYN++  S+  A+  ++
Sbjct: 299 VALTLGVGVD---VLDERMQQLEPIAMRLEVKQGQHGCTLINDSYNSDINSLDIALDFMN 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +   H   R   +L D+ + G  +   + ++  +     +      G  + +   A    
Sbjct: 356 RRPDHQGRRHTLILSDIYQSGMTTDELYQEVGMLCQQRGVEKFIGVGKDLQS--HAYCIG 413

Query: 422 IHV-HYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   ++ E+++ L    +   L D +V+++K +   GF +L  LL+++
Sbjct: 414 VKAKYFFESVEELIDSDVFKQLHD-EVILIKGARRFGFDQLTELLVQK 460


>gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
 gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
          Length = 445

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 200/470 (42%), Gaps = 31/470 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + ++  L       ++   P     G +IDSR +   E F A+     DGH +I  A
Sbjct: 1   MKKICSWAQLAALHPEATLLGEPGATFAGFAIDSRRVQSGELFIALATASDDGHAYIADA 60

Query: 61  VQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +KGA   +V+        +      +  V D L AL  LA   R + +  ++A+TGS G
Sbjct: 61  CRKGAAGALVHQLPADHQQLIDAGHALLVVPDTLAALAILAANWRQQWEFPVVAVTGSSG 120

Query: 119 KTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           KTT        L ++  T A   G+YNNHIG+PL++   P D   G+FELGMS  GEI  
Sbjct: 121 KTTVS----ACLRTLFPTSAGTTGNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDA 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L++P I +IT +  AH+        I  AK E+         + ++ D    + L  
Sbjct: 177 LAELLQPQIGLITNVGSAHIGKLGSFAAILEAKLELARHCS---CLIVDGD---GQELLD 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG--KSMEVVHHGIGYHMAQ 294
           ++     + + S G +       +  +   E    +E++       + +        M +
Sbjct: 231 RARQRH-QDVLSVGFTAGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVK 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L+ +     L  D       L        R + +R    +G  T I + YN+NP S++
Sbjct: 290 NSLLAIAAGLKLGLDQAALQAGLRRVQLPPLRWELHR----RGGNTYIFDCYNSNPGSLR 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+   S    H  G R+AVLG+M E+G  S+  H  +A  +   N   V   G     L
Sbjct: 346 AALEDFS----HYPGYRVAVLGEMRELGAFSEREHRKVASAI---NCDLVLTYGDEARFL 398

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D L   I  H   T++ +   + +      VV+VK S      RL++ L
Sbjct: 399 ADELGADIATH-CPTLEDVVARLANC--QNAVVLVKGSRGNQMERLLDAL 445


>gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
 gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
          Length = 475

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/468 (24%), Positives = 191/468 (40%), Gaps = 22/468 (4%)

Query: 4   LWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +         + ++I    +       V  +  D+R++   + F A+KG  +D + F+  
Sbjct: 3   MMNLQQAHAWICRSIPEARLVGDAATPVARVHTDTRTLQAGDLFVALKGERFDANAFLAD 62

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   GA   + +      + +  +P   V D L AL  LA   R +    +I ITGS GK
Sbjct: 63  ARAGGAVAAIAH----GGLEAAGLPGIEVPDSLAALGALAAGWRAQFGLPLIGITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TT  +M+   L + K   A    G++NN IGVPLTL R+       + E+GM+H GEI  
Sbjct: 119 TTVTQMVASILRAWKGEAAFSTQGNFNNDIGVPLTLLRLRAAHAAAVIEMGMNHPGEIAT 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      HL     +  +A     +   L   G       D +  L  A
Sbjct: 179 LAAIAQPTVALVNNAQREHLEFMHTVRAVAEENGSVLAALPADGVAVFPAGDPYSALWGA 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +     +   +FG     D +  +         +E+     ++       G H   N L
Sbjct: 239 LAAP---RRCVTFG--AGGDVRCAQASWRQGAWAVEMVTPLGALSCSLQIAGQHNVTNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                     A +++  + LS F P +GR +     +     T++D+SYNANP SM+AAI
Sbjct: 294 AAAACALAAGAPLESIARGLSAFTPVKGRSRAIGLRVADRQVTVVDDSYNANPDSMRAAI 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+ +        + V+GDM E+G+    FH +         I H++  G        A
Sbjct: 354 DVLASLPAPQ----LLVMGDMGEVGDQGPQFHAEAGAHARAAGIRHLYALGEQSAGAARA 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + H      M  L   +  +L     V+VK S      +++  ++
Sbjct: 410 FGAARH---FNDMASLQAAVLQALPRVGSVLVKGSRFMKMEQVVEAMV 454


>gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 466

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 205/443 (46%), Gaps = 31/443 (6%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVL 92
                  F  + G   DGH+FI  A+ KGA   +V  +                 V + L
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPVKNTL 97

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVP 150
            AL KLA   R R    +IA+TGS GKTTTKE+L   L +++++       +YNN IG+P
Sbjct: 98  TALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLP 157

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            TL ++       + ELGM+H GEI  L+ + +P  A+ITTI  AH+      + IA AK
Sbjct: 158 FTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAK 217

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI EGL+K G +F      + ++LK K+   G K + +  +      ++       + S
Sbjct: 218 GEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSE------KIFSI-LQKKSS 270

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              ++ + K ++   +  G  + +N+ + +  +  +    +   + +  F          
Sbjct: 271 GFLLEYKNKKIQW--NLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSFKSSN-----K 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  L  G +++I+++YNAN  SM +++ V  Q++   E    AVLGDM E+GE S+ FH 
Sbjct: 324 RLDLQNGKYSVINDTYNANYESMISSLEVADQLADGKEFY--AVLGDMKELGEYSKEFHK 381

Query: 391 DLAEVLSLY-NISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLV-- 442
            L +  S + N+  ++  G     +++             H+  T +GL   I   L   
Sbjct: 382 KLGKKCSEFQNLKGLYTFGTDAFWIQEEFVKRTSSPRFSEHFPGTQEGLSELIHKFLQTI 441

Query: 443 -DGDVVVVKSSNSCGFYRLINLL 464
            +G +V+ K+S      R +  L
Sbjct: 442 PEGSIVLAKASRGIQLERFVEAL 464


>gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
          Length = 457

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 195/451 (43%), Gaps = 35/451 (7%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ISIDSR++   + F AIKG ++DGH F+   + KG   VV+   M   + S   P +
Sbjct: 28  FKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKGVKSVVIKKGMQKLLPSNF-PYW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  KLA+  R +    I+AITGSVGKTTTKEM+   L+ + +      ++NN 
Sbjct: 87  VVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      E I
Sbjct: 147 IGVGLTILAADIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKENI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EI + L   G + +  +D F E           KT+  F K +    +L      
Sbjct: 207 THAKCEISKFLNPEGVVIIPANDPFLE-----------KTLKEFWKGRVIKVRLLNIANQ 255

Query: 267 SEQSWMEVQLQG-----------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            E    +  L+G           +         G+H A N L    +   L  D      
Sbjct: 256 KESIKKDDNLRGFYNPSNKTILIEENTFEISFEGFHNASNFLFAYAVAKELGIDFA---- 311

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           + + F      G+       +   T+ DESYNA+P S+KA I  L +        +  + 
Sbjct: 312 SSNKFDFVSLDGRNKILKSVK--TTIYDESYNASPESVKACIKNLLE----KPRNKFFIF 365

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           G M E+G+ S+ +H ++  +++  +I          +     + L           +  +
Sbjct: 366 GSMQELGKESEKYHKEIFNLINNSDIKKCLFICEKENEKNYTNFLKDKKKFLVLNNIKDV 425

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              I  S   GD ++VK S      ++I L+
Sbjct: 426 PQEINKSTKKGDSILVKGSRFWQLDKIIELI 456


>gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
 gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
          Length = 436

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 198/461 (42%), Gaps = 27/461 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ + + G  +G      VNG +IDSRS++  + F  I     DGHDFI  A+  GA 
Sbjct: 2   ASEIAEVVGGQLVGD--DVAVNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAP 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +   V      +     VDD   AL  L  AAR R    ++ +TGSVGKT+TK++L
Sbjct: 59  AYLTSAGAVDGAAGAA---IIVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLL 115

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++  +T A   S+NN +G+PLTL   P D +  + E+G   +G I  L  + +P +
Sbjct: 116 AGLLATTFRTAASEKSFNNELGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIGKPTV 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT +   HL  F  IE +A AK E+ E L   G   LN D      +  ++ A     
Sbjct: 176 GIITRVEGVHLELFGNIEAVARAKGELVEALPDDGIAVLNADHKHVAAMADRTSA----R 231

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + +FG +  +D          E ++   +       ++     G H   N L  +     
Sbjct: 232 VITFGLTPESDVHASAVVIDDELRASFRLHSPWGETDIRLAARGEHQVPNALAAVAAAGG 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++   +           G R     ++   T+++++YNANP SM AA+     ++ 
Sbjct: 292 LGVPLEKFAEG---LLGAALSGLRMELVTSERGVTILNDAYNANPTSMSAAL---QSLAA 345

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GRRIAVLG M E+G  S   H  +A       I  V   G               V 
Sbjct: 346 LAAGRRIAVLGTMAELGHDSAWQHEAIASQARELGI-EVIAVGEPTY--------GADVR 396

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +      + S L  GD V+VK S      R+   LL 
Sbjct: 397 HVADVAAASAEL-SDLGAGDAVLVKGSRVAELERVAQALLN 436


>gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
 gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
          Length = 391

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/393 (27%), Positives = 179/393 (45%), Gaps = 22/393 (5%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V+DVL A   LA     ++   + A+TGS GKTTTK+ML   L++  KTY   G+Y
Sbjct: 10  PYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTFKTYKTQGNY 69

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P  A++T +  AHL+ F   
Sbjct: 70  NNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDR 129

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            EIA  K +I +G+EK G +    D    + L         K +  FG    A+ ++ + 
Sbjct: 130 SEIAKGKLQIADGMEKGGVLLAPVDPIVEDYL------PTDKKVVRFG--PGAELEITEL 181

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +  +    +V    ++++      G + A N ++   +        +   +A   F   
Sbjct: 182 TERKDSLTFKVNFLEQALD--LPVTGKYNATNAMIASYVALQEGVTEEQIRQA---FQNL 236

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R           ++ + YNANP +MK  +   S I  +  G++IAVL DM E+G+
Sbjct: 237 ELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGD 296

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYS------ETMDGLF 434
            S   H  +   ++   +  V   G  +  L     +     HV+Y       +  + + 
Sbjct: 297 QSVQLHNQMILSITPDVLDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMV 356

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             ++ SL   D +++K SNS    +L+  L  E
Sbjct: 357 KQVKESLGAHDQILLKGSNSMNLAKLVESLENE 389


>gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 4207]
          Length = 510

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 133/511 (26%), Positives = 206/511 (40%), Gaps = 53/511 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G   DGHD
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-------------------ALN 96
               AV  GA +V+        + ++ +P     +VL                     L 
Sbjct: 60  HAASAVAAGAAVVLAAR--PVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLA 117

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
               A  +    TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R 
Sbjct: 118 TAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRA 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + 
Sbjct: 178 TRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQA 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           +  +G + LN DD     +   + A     +    +    D            +    + 
Sbjct: 238 VPHSGAVVLNADDPAVAAMAKLTAA----RVARVSRDNTGDVWAGPVSLDELARPRFTLH 293

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 EV     G H   N L    +     A V+    AL+   P      R +    
Sbjct: 294 AHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTR 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
               T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  + 
Sbjct: 352 GDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIG 411

Query: 394 EVLSLYNISHVWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLF 436
            +    ++S + + G        H  A+ +    S                   D     
Sbjct: 412 RLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 471

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 472 LRAELRPGDVVLVKASNAAGLGAVADALVAD 502


>gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 466

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/443 (27%), Positives = 206/443 (46%), Gaps = 31/443 (6%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVL 92
                  F  + G   DGH+FI  A+ KGA   +V  +                 V + L
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPVKNTL 97

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVP 150
            AL KLA   R R    +IA+TGS GKTTTKE+L   L +++++       +YNN IG+P
Sbjct: 98  TALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLP 157

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            TL ++       + ELGM+H GEI  L+ + +P  A+ITTI  AH+      + IA AK
Sbjct: 158 FTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAK 217

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI EGL+K G +F      + ++LK K+   G K + +      +D ++       + S
Sbjct: 218 GEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLT-----KSD-KIFSI-LQKKSS 270

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              ++ + K ++   +  G  + +N+ + +  +  +    +   + +  F          
Sbjct: 271 GFLLEYKNKKIQW--NLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSFKSSN-----K 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  L  G +++I+++YNAN  SM +++ V  Q++   E    AVLGDM E+GE S+ FH 
Sbjct: 324 RLDLQNGKYSVINDTYNANYESMISSLEVADQLADGKEFY--AVLGDMKELGEYSKEFHK 381

Query: 391 DLAEVLSLY-NISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLV-- 442
            L +  S + N+  ++  G     +++             H+  T +GL   I   L   
Sbjct: 382 KLGKKCSEFQNLKGLYTFGTDSFWIQEEFVKRTSSPRFSEHFPGTQEGLSELIHKFLQTI 441

Query: 443 -DGDVVVVKSSNSCGFYRLINLL 464
            +G +V+ K+S      R +  L
Sbjct: 442 PEGSIVLAKASRGIQLERFVEAL 464


>gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase,
           D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp.
           ORS278]
          Length = 458

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/482 (29%), Positives = 204/482 (42%), Gaps = 45/482 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-----------H 50
             LWT  +  +A+     G  P+  ++ ++ DSR++ P   F A+ G             
Sbjct: 3   KALWTVAEAARALG--LAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFASS 60

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKAT 109
            DG +F  +A Q GA  ++V       I  +++P   V D L   L  LA AAR R    
Sbjct: 61  RDGWEFAANAEQAGAVAMIV----PHRIEGVTVPQLVVTDTLIDGLWALARAARSRFHGP 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I +TGS GKT+TKE +           A   S+NN  GVPLTL          + E+GM
Sbjct: 117 VIGLTGSAGKTSTKEFIAA----YPGASASPSSFNNFWGVPLTLCNADPSASVWVVEMGM 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +  GEI  LT L +P +A++  + P HL     +E I   K  I  GL   G + L  D 
Sbjct: 173 NQKGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRQEKVSIARGLPSGGILVLPAD- 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                    +          FG   +A+ +        E   +   + G S+        
Sbjct: 232 --------LAAPEWSGKTIRFG--GDAEVRELSHTARGESWDVTADIAGCSVNFALTPGA 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  L  V+    D       L       GRG         G   LID+S+N N
Sbjct: 282 PHRLHNALAALASVAAAGLDPALLAPELGEVGIMTGRG----VEQTVGDIVLIDDSFNGN 337

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PASM AA+  L        GRRIAV+GDM E+G+ + ++H  +   L+   I  V+  G 
Sbjct: 338 PASMAAALDGLQARPVR--GRRIAVIGDMLELGDEAPAYHAKMVGHLA--GIDGVFCVGP 393

Query: 410 HVLALKDALPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  L +ALP+   + + E    L    + + L  GDVVVVK S    F+  +N  + + 
Sbjct: 394 LMRHLFEALPQGRRLGWHEDPVTLDPKQVAALLAPGDVVVVKGSKKI-FW--VNKFVAKL 450

Query: 469 PA 470
            A
Sbjct: 451 AA 452


>gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
 gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
          Length = 418

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 197/434 (45%), Gaps = 35/434 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            D+RSI     FFA+KG +++G+ F   A+ +GA L +++     +          VD+V
Sbjct: 18  TDTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIIDDAAYFTGPKT----ILVDNV 73

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L  LA   R + K  ++A+TGS GKTTTKE+++  LS   +T A  G+ NNHIGVPL
Sbjct: 74  LETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHGNLNNHIGVPL 133

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL  M    + GI E+G +H  EI FL  L  P    IT    AHL  F G+E +   K+
Sbjct: 134 TLLSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITNFGKAHLEGFGGMEGVVMGKS 193

Query: 212 EIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           E++  L     T F+N  D+       K     I  +Y                  S   
Sbjct: 194 ELYTFLHTHQKTAFINPKDAL-----QKEKTTDIAHVY----------FPESITFKSAAP 238

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +++V    + +E+  + +G +   N+   + I             A+S + P   R +  
Sbjct: 239 FVKVAF--EDLEIQSNLVGDYNYANIAAAIAIGLYFKIPKQEIKTAISEYVPSNNRSQII 296

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A NQ    L+ ++YNANP+SMKAA+S  + +       +  +LGDM E+G  +   H 
Sbjct: 297 HTANNQ----LLLDAYNANPSSMKAAVSNFANLKAAF---KTVILGDMFELGTTAAEEHQ 349

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           ++ +        + +  G          P+       +T + L   + +  +  + +++K
Sbjct: 350 EMVDFTDACCFENTYYVGALFSGTTTKNPQ------FKTFEALEKHLHAQPLRKNSILIK 403

Query: 451 SSNSCGFYRLINLL 464
            S      RL+N+L
Sbjct: 404 GSRGMRLERLLNVL 417


>gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 496

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 141/502 (28%), Positives = 207/502 (41%), Gaps = 46/502 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            T   ++QA+ G +               +  DSR +     F AI G H DGHDF+  A
Sbjct: 4   MTLAQMVQAVHGSAEHCDCDDLETVTATSVVTDSRQVVDGALFVAIAGEHVDGHDFVDAA 63

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITG 115
            ++GA   +V  +    I S  I    V D + AL  LA A     KA     TII ITG
Sbjct: 64  ARQGAAAALVERE----IKSAPIAQIVVPDTVAALGALAKANLEARKAIDEPFTIIGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTTTK++L   LS+  +T A  GS+NN IG+PLT  ++     + + E+G +H+GEI
Sbjct: 120 SVGKTTTKDLLHALLSTQGETVAPKGSFNNEIGLPLTALKVGERTRYLVAEMGANHIGEI 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT +  P IAV+  +  AHL  F  +E IA AK+EI  G        LN DD     +
Sbjct: 180 ARLTKIAPPDIAVVLKVGVAHLGEFGSVERIAQAKSEIVRGEAPNAITVLNADDERVAAM 239

Query: 236 KAKSHALGIKTIYSFGKSK----NAD-FQLRKWKQCSEQSWMEVQL---QGKSMEVVHHG 287
              +       ++ FG  K    + D +         +      +L   QG    V    
Sbjct: 240 SGIAKG----DVFWFGIDKAQAHDIDGYMAADDIALDDLGHPVFELVSSQGVEQRVSLGI 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESY 346
            G H   N L    +  +L   ++   + L+                 +   FTLID+S+
Sbjct: 296 GGRHNVMNALAAASVAKLLGMPLERIAQVLADTRRISPHRMAVSEVERDGARFTLIDDSF 355

Query: 347 NANPASMKAAISVLSQISPH--GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A I  L         +  R+AVLG M E+G    + H  +        +  +
Sbjct: 356 NANPDSMRAGIDGLMAWRSQEDQQPYRVAVLGSMLELGSDEHNLHRTIGAYALDGGVDAL 415

Query: 405 WLSGFHVLALKDALPRSI-----------------HVHYSETMDGLFLFIQSSLVDGDVV 447
              G    A  +AL + I                  V  ++  D L   + +      +V
Sbjct: 416 ICVGGGDDASLNALAQDIADGGTEAKDADDMRPVRAVKTTQQADDLIRALNAE-HPDMLV 474

Query: 448 VVKSSNSCGFYRLINLLLEEFP 469
           ++K S++ G   L      E  
Sbjct: 475 LLKGSHASGLSALATQWAAEAE 496


>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 160/347 (46%), Gaps = 9/347 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  + G+  DSR I     F  + G  +DGH +    ++ GAG  +   D   +      
Sbjct: 5   ELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPAGA-- 62

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL  LA A        ++ ITGS GKTTTK+M+   LS+  K +   G++
Sbjct: 63  -VIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYKVHKTGGNF 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP D +  + E+GMS   EI  L+ + RP +AVIT I  AHL      
Sbjct: 122 NNHIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQLGSR 181

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR 261
            EIA AK EI  G++  G +  + D+    ++  ++  +  + +  ++FG   + D    
Sbjct: 182 HEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGTFTFGLDHSNDDYPT 241

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S+       L  +   +    +G H   N L  L +        +     L+  H
Sbjct: 242 GMMFHSKGIIFTSLLHPEEG-LDLPLLGQHNVINCLAALAVARHFGITEENIRTGLTGLH 300

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                G R    +     T+++++YNA+P SMKAAI  L  +  +  
Sbjct: 301 LT---GMRIEQIVAPSGLTILNDAYNASPTSMKAAIDALHSLKGYHH 344


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 191/467 (40%), Gaps = 13/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G   +  +  +  DSRS+    +  FFA+K    DGH++I    +
Sbjct: 3   YTIEKVATLIGARRYGKH-KADIGFLLTDSRSLCFPEETLFFALKTKRNDGHNYIADLYR 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV                  V D L AL +LA   R      I+ ITGS GKT 
Sbjct: 62  RGVRNFVVTDVPNNYDSAYSGANFLKVIDTLEALQRLAERHRDAFDIPIVGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   +S          SYN+ +GVPL++  M      GIFE G+S  GE+  L  +
Sbjct: 122 VKEWLYQLMSPDMYVTRSPRSYNSQVGVPLSVWLMDKQTRLGIFEAGISEKGEMSALRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P IAV+T +  AH  NF   EE    KA +F       TI  + DD     + A    
Sbjct: 182 IQPTIAVLTNLGSAHQENFESAEEKCREKAILFH---DAKTIVYHADDKIVAGVVASLDY 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTL 300
            G +  +S    + A   ++  ++    + +    +G          I      N ++  
Sbjct: 239 RGERLYWSTS-DRQAPMYIKAVEKKETAATITYIYKGGIENWYSIPFIDDASVTNSIVCA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L  D D   + +    P      R      +   TLI++SYN++  S+  A+  +
Sbjct: 298 TIALHLGLDADKLDERMLQLEPVA---MRLEVKEGRHGCTLINDSYNSDFNSLDIALDFM 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++   H   RR  +L D+ + G      + D+ E+ +   +  +   G  + +  D +  
Sbjct: 355 NRRPDHQGRRRTLILSDIFQSGVEPARLYRDVGELAAKRGVEKLIGIGPSISSYADEIHT 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +S   D +   +   L   +V+++K +   GF R+  LL+++
Sbjct: 415 QEKYCFSTVADFIHSPVFKGLR-NEVILLKGARRFGFDRITELLVQK 460


>gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 510

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 132/511 (25%), Positives = 205/511 (40%), Gaps = 53/511 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I PQ      V G +  DSR+I P   F  + G   DGHD
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLRLPGARADGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-------------------ALN 96
               AV  GA +V+        + ++ +P     +VL                     L 
Sbjct: 60  HAASAVAAGAAVVLAAR--PVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLA 117

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
               A  +    TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R 
Sbjct: 118 TAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRA 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + 
Sbjct: 178 TRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQA 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           +  +G + LN DD     +   + A     +    +    D            +    + 
Sbjct: 238 VPHSGAVVLNADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLH 293

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 EV     G H   N L    +     A V+    AL+   P      R +    
Sbjct: 294 AHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTR 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
               T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  + 
Sbjct: 352 GDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIG 411

Query: 394 EVLSLYNISHVWLSGF--------HVLALKDALPRSIHVHY---------SETMDGLFLF 436
            +    ++S + + G         H   L++A                      D     
Sbjct: 412 RLAVRLDVSRLVVVGTGRSISAMHHGAVLEEAWGSGEATADHGADRTAVNVADGDAALAL 471

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 472 LRAELRPGDVVLVKASNAAGLGAVADALVAD 502


>gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 460

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/473 (23%), Positives = 192/473 (40%), Gaps = 23/473 (4%)

Query: 1   MNPL--WTFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQEAFFAIKGPHYDGHDFI 57
           M  L       L   I G  +   PQ  V      S R +      F     + +     
Sbjct: 1   MKELYPMRLGRLASLIGGRLLRGTPQTSVKHAVFGSTRHLREGVVLFFKPQKNVEKQLRS 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           L  +++ AG V+        I      V  V D   AL KL    R +S+A  I +TGS 
Sbjct: 61  LQ-IKRSAG-VIAPKGWSRRIPPSHA-VIEVSDPKQALWKLVHWQRAQSRAIFIGVTGSA 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM    LS+  K    + + N +  +P  L  +       + E+GM+  G IR 
Sbjct: 118 GKTTTKEMAASILSTKYKVLKSVANNNLYSLMPGNLILLHPKHQVVVLEMGMAGFGNIRK 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +P + ++T +  AH+      +  +A AK E+ +GL   GT+ LN DD   + L 
Sbjct: 178 QCLVAKPSLGIVTNVGEAHVGKLGHSLANVARAKQELIDGLAPKGTLILNADDPGSKRLN 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +        + + G  K A  +  + K         +      +       G H   N 
Sbjct: 238 TRRF---RGQVITLGIEKPATIRATRVKYTKNGMSFYI----GKVPYHIPVWGRHNIYNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L        K L  F     R +R +   N   + LI++ YNANP++M A 
Sbjct: 291 LAAIAVAKQLNVPTPWIQKGLQNFPAPRMRLQRIKGIKN---WLLINDCYNANPSAMVAG 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL +++   +   +AVLGDM  +G+LS   H  + + ++  N S +   G   + +  
Sbjct: 348 LKVLMRVAGKKQS--VAVLGDMHSLGKLSLQSHRQVGKFVARLNPSTLITVGPQAVQIAK 405

Query: 417 ALPRSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               + +     ++    + +  +++ ++ +G V+  K+S      + +N + 
Sbjct: 406 GASAAGYKGKIRSLPNQPETVANYLRKNIPEGSVLYFKASRKTALEKTVNKIR 458


>gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS]
 gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS]
          Length = 851

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 131/404 (32%), Positives = 201/404 (49%), Gaps = 9/404 (2%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G  L+   T +    G   +P   V  V  AL  LA+A R      I+A+TGS GKT+T
Sbjct: 39  NGYALLADATPLAFPHG---VPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTST 95

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHL 181
             M+   L           ++N   GV   +A +  +    + E+  S L +      ++
Sbjct: 96  CNMIEDLLQVFGVPKRPTKNFNTFDGVNGEVANLTNEA-IAVIEVAASFLSQRGGPRPNV 154

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RP +A+IT+I  AHL  F   + +A  K+ +F+ + + GT  +  D   ++ +  ++ A
Sbjct: 155 LRPEVAMITSIGEAHLEYFGSPQGVAEVKSNVFDLMSR-GTAVIPRDADTYDYMVQRARA 213

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G  T+ SFG   +AD  L  +   +    +E ++ G+ +      +G H A+N +  LG
Sbjct: 214 AGATTV-SFGAHPSADAHLLSY--SAADGVVEAEIFGERITYELGALGRHFARNSVGALG 270

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V+ L  D   A  AL+      GRG  +      G FTLID++YNANP+S++AAI +LS
Sbjct: 271 VVAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLS 330

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           + +    GRRIAVL DM E+G  S+ FH  LAE L    I  V+L G  + AL D LP  
Sbjct: 331 ERATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSE 390

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           I   Y  T+DGL   +     DGDVV+ K SN    ++++    
Sbjct: 391 IRGQYYPTVDGLQAALDREFADGDVVLFKGSNGTELHKVVAHFK 434


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 118/474 (24%), Positives = 206/474 (43%), Gaps = 20/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G      ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITG 115
               +G    VV  ++V    +   P      V   L AL +LA   R      I+ ITG
Sbjct: 58  ELYARGVRNFVV--EVVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITG 115

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+
Sbjct: 116 SNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +++P I V TT+  AH  NF  +E     K ++F   E    I  + D+      
Sbjct: 176 MALRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFHDTEA---IVYSADNEVMAQC 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQ 294
            ++    G K  +S  K+  A F ++  ++   ++ +    +G++  +     I     +
Sbjct: 233 LSQYDYKGQKLDWSV-KNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVK 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +    +   L     T  + ++   P      R      Q   TLI++SYN++  S+ 
Sbjct: 292 NSITCAVVSLHLGLTPATISERMAQLEPVA---MRLEVKEGQHGCTLINDSYNSDFNSLD 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +LA 
Sbjct: 349 IALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQ 408

Query: 415 KDALPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + A       H+  T++      + ++L D +V+++K +   GF RL  LL+++
Sbjct: 409 RSAFKHLGEKHFFATVNSFIHSDVFANLHD-EVILLKGARQFGFDRLTELLVKK 461


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 196/467 (41%), Gaps = 12/467 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           ++T   +   I     G      +  I  DSRS+    +  FFA+K    DGH +I    
Sbjct: 2   IYTIDRITTLINAERYGEA-DARIGFILTDSRSLCFPEETLFFALKSDRNDGHRYIPELY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++G     V     +S          V D L AL  LA   R      II ITGS GKT 
Sbjct: 61  RRGVRNFAVEVLPDSSSSYTDANFLKVADTLKALQMLAKKHRETFHIPIIGITGSNGKTM 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   L   +       SYN+ IGVPL++  +  +   G+FE G+S   E+  L  +
Sbjct: 121 VKEWLYQLLMPERFVTRSPRSYNSQIGVPLSVWLLNENTQIGLFEAGISRPKEMDALREI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RP I V+TTI  AH  NF+ IEE    K  +F   +   TI    D++    L ++   
Sbjct: 181 IRPTIGVLTTIGTAHQENFASIEEKCREKLRLFRHAQ---TIVYCTDNALTARLISEESL 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
            G    +S  K +NA   + + ++ +E + +  + +     +     I     +N +   
Sbjct: 238 EGEPIAWS-TKDENAQLYVSRIEKQAEHTTVSYRYKNHIEGQYTLPFIDDASVENSITCT 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L        K ++   P      R      Q   TLI++SYN++  S+  A+  +
Sbjct: 297 AVALYLGIAPAALAKRMAHLEPVA---MRLEVKEGQHGCTLINDSYNSDIHSLDIALDFM 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++   H   +R  +L D+ + G      + +++ + +   +      G  + A  D++  
Sbjct: 354 NRRPDHKGRKRTLILSDIEQTGRKPADLYREVSHLAAKRRVEKFIGIGRQLCAHADSIGI 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    + +    +       L   +V+++K +   GF RL +LL+++
Sbjct: 414 TDKCFFPDCESFIHSEAFDKLR-NEVILIKGARRFGFDRLTDLLVKK 459


>gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 496

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/491 (23%), Positives = 194/491 (39%), Gaps = 36/491 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++   + G          + G +  DSR +A  + F A+ G   DGHD+   A+ +GA
Sbjct: 6   LDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAATAMDQGA 65

Query: 66  GLVV-----------------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             V+                 V+    A+       V  V + +  L +  V        
Sbjct: 66  AGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKLARHVVDKLSARGL 125

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I ITGS GKT+TK+++   L     T A  GS+NN IG P T  R      + + E+ 
Sbjct: 126 TVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTETTKYLVSEMS 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +G I  L  +  PHI V+  +  AH+  F   + IA AK E+ E L   G   LN D
Sbjct: 186 ARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARAKGELVEALPADGIAVLNAD 245

Query: 229 DSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQC--SEQSWMEVQLQGKSMEV-- 283
           D +   +  ++ A    T++SF    K         +    S  ++  +    + +    
Sbjct: 246 DDYVAAMADRTSA----TVWSFSTLHKPVRVAATDIRLDNLSRPTFTLIGTDSQKVTHTA 301

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L           D  T  + L     +     R           +
Sbjct: 302 QVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAH--RMDVHHAGNDVIV 359

Query: 342 IDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ID++YNANP SM+A +  L+  +       R IAVLG M E+G+ + + H++L   ++  
Sbjct: 360 IDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDATADHVELMRTVAEQ 419

Query: 400 NISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            I  V + G        +  A    +    +         +   L  GDV++VK+SN+  
Sbjct: 420 GIDLVVVVGTDENARAMINAAAAMGLRAIPTADTTQAATEVLKVLGRGDVILVKASNAYR 479

Query: 457 FYRLINLLLEE 467
            +++   ++ +
Sbjct: 480 LWQVAEAVVAQ 490


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 108/463 (23%), Positives = 192/463 (41%), Gaps = 12/463 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I  H  G      ++ +  DSRS+A      FFA++    DGH ++    +
Sbjct: 3   YTSEQITALIDAHRFGANSDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYR 62

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV+      +    +   + V D L AL  LA   R R    ++ ITGS GKT 
Sbjct: 63  RGVRDFVVSALPDDYASRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTI 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ +GVPL++  +      GIFE G+S  GE+  L  +
Sbjct: 123 VKEWLYQLLSPQLVVTRSPRSYNSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALRPI 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P I V+T    AH  NF+ +EE  + K  +F   +    +  + DD        ++  
Sbjct: 183 IQPRIGVMTNTGQAHQENFTSLEEKCAEKLSLF---KDADVLIYDADDPVVAEGVRQASF 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G +  +S  K +     +RK    SE++ +      +  +           QN +  L 
Sbjct: 240 AGDQLAWSRTKDEGP-LVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIHCLA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D     + ++   P      R           LI++SYN++  S+  A+  + 
Sbjct: 299 VCLYLHVDAAVIAQRMARLEPVA---MRLEVKQGVRGCILINDSYNSDVNSLDIALDFMQ 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +       R+  +L D+ + G   +  +  +AE+++   +  +   G  + A++D     
Sbjct: 356 RRPDRVGMRKTLILSDISQSGMPREQLYAQVAEMVNRRRVDRLIGVGPDLSAMQDLFK-- 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I   +  T   L    +   +  ++V++K + +  F  L  LL
Sbjct: 414 IDAVFYPTTKALLESGKVGRLRNEMVLLKGARAYNFEALTELL 456


>gi|108800226|ref|YP_640423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. MCS]
 gi|119869354|ref|YP_939306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. KMS]
 gi|126435849|ref|YP_001071540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium sp. JLS]
 gi|108770645|gb|ABG09367.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. MCS]
 gi|119695443|gb|ABL92516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. KMS]
 gi|126235649|gb|ABN99049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium sp. JLS]
          Length = 497

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 127/494 (25%), Positives = 201/494 (40%), Gaps = 37/494 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I P+      + G +  DSR++     F A+ G   DGHD
Sbjct: 1   MIEL-TLARVAEIVGGRLADITPEDAAATRITGTVEFDSRAVTAGGLFLALPGARSDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPV------FGVDDV----------LGALNKLA 99
           F   AV  GA  V+    +      +              D           L  L    
Sbjct: 60  FAAAAVAAGAAAVLAARPVGVPAVVVPPAAGPEGSGVLEHDTDGAGAAVLAALARLAAAV 119

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A  +     I+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R    
Sbjct: 120 AAELVDGGLRIVGITGSSGKTSTKDLVAAVLAPLGEVIAPPGSFNNELGHPWTVLRADRS 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            DF + E+   H G I  L  +  P IAV+  +  AHL  F   E IA+ K+E+ + + +
Sbjct: 180 TDFLVLEMSARHPGNIAALAAIAPPSIAVVLNVGTAHLGEFGSREAIAATKSELPQAVPE 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278
           +G + LN DDS    +   + A     +    +   AD            +    +   G
Sbjct: 240 SGVVILNADDSAVAAMAEVTAA----RVVRVSREPGADIWADAVTLDELARPRFTLHAAG 295

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             + V     G H   N L    +     A +D    AL+   P      R +    +  
Sbjct: 296 GEVPVNLAVHGDHQVSNALCAAAVALECGATLDQVAAALAGAGPVS--RHRMQVTTREDG 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISP--HGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            T+++++YNANP SM+A +  L+ +S     + R  AVLG+M E+G+ S S H  +  + 
Sbjct: 354 VTVVNDAYNANPDSMRAGLKALAWMSRGGAAKRRSWAVLGEMAELGDDSISEHDSIGRLA 413

Query: 397 SLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              ++S + + G      A+                 +  D     +   L  GDVV+VK
Sbjct: 414 VRLDVSRLVVVGTGRSASAMHQGAVMEGSWGAEATRVDDADAALALLSDELQPGDVVLVK 473

Query: 451 SSNSCGFYRLINLL 464
           +SNS G   L + L
Sbjct: 474 ASNSAGLGALADSL 487


>gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 458

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 139/482 (28%), Positives = 204/482 (42%), Gaps = 45/482 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-----------H 50
             LWT  ++ +A+     G  P+  ++ ++ DSR++ P   F A+ G             
Sbjct: 3   KALWTVAEVARALG--LAGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFASS 60

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKAT 109
            DG +F  +A Q GA  ++V       I  +S+P   V D L   L  LA AAR R    
Sbjct: 61  RDGWEFAANAEQAGAVAMIV----PHRIDGISVPQLVVPDTLIDGLWALARAARARFHGP 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I +TGS GKT+TKE +           A   S+NN  GVPLTL          + E+GM
Sbjct: 117 VIGLTGSAGKTSTKEFIAA----YPGASASPSSFNNFWGVPLTLCNADPSASVWVVEMGM 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +  GEI  LT L +P +A++  + P HL     +E I   K  I  GL   G + L  D 
Sbjct: 173 NQQGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRKEKVSIARGLPSDGILVLPVD- 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                    +       +  FG    AD          E   +   + G+ +        
Sbjct: 232 --------LAAPEWPGRVLRFG--AGADVHAMSQVPAGESWDVTADIAGRHLAFSLTPGA 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  L  V+    D     + L       GRG   R     G   LID+S+N N
Sbjct: 282 PHRLHNALAALASVAAAGLDPVLLARELGEVGIMTGRGVEQRI----GEIVLIDDSFNGN 337

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PASM AA+  L        GRRIAV+GDM E+G+ + ++H D+   +    I  V+  G 
Sbjct: 338 PASMAAALDSLQARPVR--GRRIAVIGDMLELGDEAPAYHADMVGHV--TGIDGVYCVGP 393

Query: 410 HVLALKDALPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  L + LP    + + E    L    + + L   DVVV+K S    F+  +N  +++ 
Sbjct: 394 LMRHLFEKLPPEKRLGWHEDPATLDASQVAALLAPDDVVVIKGSKKI-FW--VNKFVQKL 450

Query: 469 PA 470
            A
Sbjct: 451 AA 452


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/472 (23%), Positives = 195/472 (41%), Gaps = 17/472 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G   +  +  +  DSRS+    +  FFA+K    DGH++I    +
Sbjct: 3   YTIEKVTTLIGARRYG-DKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYR 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV       +          V + L AL +LA   R      ++ ITGS GKT 
Sbjct: 62  RGVKNFVVTEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ IGVPL++  M    + G+FE G+S  GE+  L  +
Sbjct: 122 VKEWLYQLLSPQMCVTRSPRSYNSQIGVPLSVWLMNEQTEVGVFEAGISQPGEMLALRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KS 239
           ++P IAV+T I  AH  NF    +    K  +F       T+  N DD   E + A  +S
Sbjct: 182 IQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFH---DARTVVYNADDELVERVLAQMES 238

Query: 240 HALGIKTIYSFG---KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQN 295
              G +     G   + ++A   ++  ++    + +    +G          I      N
Sbjct: 239 TLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDASICN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            ++   +   +    D   + +           R      Q   TLI++SYN++  S+  
Sbjct: 299 SIICAIVALRIGIAPDELDRRMQGIEQVA---MRLEVKEGQHGCTLINDSYNSDINSLDI 355

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  +++   H   R   +L D+ + GE   + + +++++     +      G  + A  
Sbjct: 356 ALDFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVSDLARERGVVKFIGIGPEICAQS 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +  +    +    + +   +  SL D +V+++K +   GF RL  LL+++
Sbjct: 416 ERIQIAEKDFFGSVEEFIVSDVFRSLRD-EVILLKGARRFGFDRLTELLVKK 466


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/472 (23%), Positives = 195/472 (41%), Gaps = 17/472 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G   +  +  +  DSRS+    +  FFA+K    DGH++I    +
Sbjct: 3   YTIEKVTTLIGARRYG-DKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYR 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV       +          V + L AL +LA   R      ++ ITGS GKT 
Sbjct: 62  RGVKNFVVTEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ IGVPL++  M    + G+FE G+S  GE+  L  +
Sbjct: 122 VKEWLYQLLSPQMCVTRSPRSYNSQIGVPLSVWLMNEQTEVGVFEAGISQPGEMLALRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KS 239
           ++P IAV+T I  AH  NF    +    K  +F       T+  N DD   E + A  +S
Sbjct: 182 IQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFH---DARTVVYNADDELVERVLAQMES 238

Query: 240 HALGIKTIYSFG---KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQN 295
              G +     G   + ++A   ++  ++    + +    +G          I      N
Sbjct: 239 TLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDASICN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            ++   +   +    D   + +           R      Q   TLI++SYN++  S+  
Sbjct: 299 SIICAIVALRIGIAPDELDRRMQGIEQVA---MRLEVKEGQHGCTLINDSYNSDINSLDI 355

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  +++   H   R   +L D+ + GE   + + +++++     +      G  + A  
Sbjct: 356 ALDFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVSDLARERGVVKFIGIGPEICAQS 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +  +    +    + +   +  SL D +V+++K +   GF RL  LL+++
Sbjct: 416 ERIQIAEKDFFGSVEEFIVSDVFRSLRD-EVILLKGARRFGFDRLTELLVKK 466


>gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 464

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/468 (25%), Positives = 215/468 (45%), Gaps = 19/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +L    G  +        +++G+SIDSR+I     F  I G   DGH+F+L AV++
Sbjct: 4   SLDTILSVTGGTLVAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVEE 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++ + +     G + +PV  V D L  L  LA AAR  +KA +I ITG+ GKTT K
Sbjct: 64  GASAILASHNPF--EGEVPVPVILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTVK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L+S  K      ++N  IG+  ++     D DF + E+G+S+  ++  L  ++ 
Sbjct: 122 ELVAQLLTSKGKVAKNYLNFNTQIGMSFSILAAQGDEDFWVMEVGISNPQDMEELGTILT 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+I  + P HLS     + +A  KA++   ++  G   ++ D   +  L  +   L 
Sbjct: 182 PDIALIINVGPGHLSGL-NKQGVAYHKAQLLRYMKDEGLGIVSLD---YPDLVKEVKELR 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +++         +  +             + L    ++V    +G    +++L +  I
Sbjct: 238 SGSLFFSVLDNQCRYYSKYTGIVENGYGTYRLWLDDDIVDVTSPFLGNFGMESVLASATI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D+  + L      + R   +      G +  ID+SYNANP SM A I    +
Sbjct: 298 AHKLGVSSDSIKQQLFQAILPQNRFSCF----THGNWLCIDDSYNANPLSMNAVIESTYK 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDAL 418
           +S   +   + VLG+M E+G+ S++ H  + + L+    S ++  G  +    + LK   
Sbjct: 354 LSDEKKP-LVYVLGEMLELGDSSEAEHEKIGKKLAQTGASIIFWKGGMIDNVLIGLKGGG 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + I    S   +   LF++  L +G ++V K S S      +++ ++
Sbjct: 413 FKGILEKISTEQEFQSLFLKHRLDEG-IIVFKGSRSNKMEVFVDVFMK 459


>gi|317508857|ref|ZP_07966496.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
 gi|316252818|gb|EFV12249.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
          Length = 494

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/485 (26%), Positives = 193/485 (39%), Gaps = 28/485 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL T   + + + G    +  P   V      DSR + P   F A+ G   DG     
Sbjct: 1   MIPL-TLRQVAETVGGTLHAVPDPDLVVTAPPEHDSRKVVPGGLFLAVPGERTDGRAHAA 59

Query: 59  HAVQKGAGLVVVNTDMVAS---IGSLSIPVFGVDDVLGALNKLAVAARLR------SKAT 109
            A   GA   + +  +      +G    P    +    AL  +A  A+           T
Sbjct: 60  SAHAAGAVATLASDPLDVPTVVLGEGPYPTPPEESKRLALAAVAALAKANAEALVAQGLT 119

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ +TGS GKT+TK++L   L++   T    GSYNN +G P T+ R   +  F + EL  
Sbjct: 120 IVGVTGSSGKTSTKDLLAQVLATKGSTVGPPGSYNNELGHPWTVLRAGPESVFLVLELAA 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLN 226
             +G I  L  + RP I V+  +  AHL  F   E IA AK E+ E L      G   LN
Sbjct: 180 RGIGHIAALARIARPRIGVVLGVGSAHLGEFGSRENIAIAKGELVEALPSAEDGGVAVLN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     + A++ A     +  +G S++A+ +    +  +  +    +        V  
Sbjct: 240 ADDPLVLAMAARTKA----RVVRYGMSESAEIRAADVRVDALARPRFTLITPQGEAPVEL 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A N L    +       V    +ALS         +R +         +I++S
Sbjct: 296 QVHGEHQAHNALAAAAVALECGLSVAQTAEALSRARAASP--RRMQVTERADGAVVINDS 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM+A +  L  ++ +  G   AVLG M E+GE S + H  L       ++  + 
Sbjct: 354 YNANPESMRAGLRALVDMADNSGGVSWAVLGPMGELGEDSIALHDQLGRYAVRLSVKRLL 413

Query: 406 LSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           + G      AL          S               +   L   DVV+VK+S S G ++
Sbjct: 414 VVGDSRSAKALHTGAVLEGSWSGEAELVSDWSQAARIVADELGPRDVVLVKASQSEGLWQ 473

Query: 460 LINLL 464
           +   L
Sbjct: 474 VAESL 478


>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 420

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 212/438 (48%), Gaps = 30/438 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  DSR +   + FFA+KG +++G+ F   A++ GA   +V  +++ ++   +  VF 
Sbjct: 12  KGICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASA-IVLDEIIENLNYNNSDVFF 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +VL  L   A   R +   TII ITGS GKTT KE+L   LS    T+A  G+YNNHI
Sbjct: 71  VKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGNYNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +    D  I E+G +H+GEI+ L  +  P    IT    AHL  F GIE + 
Sbjct: 131 GVPLTLLNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYITNFGLAHLEGFGGIEGVI 190

Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K+E++E L+K  +I F+N +DS      A  +       ++ G +         +K  
Sbjct: 191 KGKSELYEHLDKNNSISFVNPNDSI-----ALKNCNSQNIEFTDGVN-------FFYKSG 238

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                        + E++ +  G +   N+L  + I      +     K ++ + P+  R
Sbjct: 239 LLGVSF------GNEEILTNLTGSYQENNVLAAITIGRNFELEDSKIAKGIANYIPQNNR 292

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+ ++     G  T+  ++YNANP SM+A++   + ++ + +   + + G + E+GE S+
Sbjct: 293 GQIFKT----GKNTIFLDAYNANPTSMEASLR--NAVNLYKKMPHVYIAGGLLELGEYSK 346

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           S H  + E+     I + W  G       ++     + +Y +T   L   ++   + G+ 
Sbjct: 347 SQHQRMIEIFQELEIENAWFIGKQFE---ESQMPEKYYNYRDTAQAL-EALRGKQIHGNF 402

Query: 447 VVVKSSNSCGFYRLINLL 464
           + +K S S     L++ L
Sbjct: 403 IWIKGSRSFALEALLDEL 420


>gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA1]
          Length = 485

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 194/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294
           I  F         +AD ++          ++    +  +              +G H   
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVA 298

Query: 295 NMLMTLGIVSILTADVDTA------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           N +          A  D          A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +   + +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRLAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++     +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAENIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLALERVGRE 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
 gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 491

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 208/476 (43%), Gaps = 25/476 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +++QA + +         ++G +IDSR++  Q  F A +G   DG+ +   A+  GA
Sbjct: 14  TTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGA 73

Query: 66  GLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
             VV+  +    +       +  +     DD    L +LA   R ++   T++ +TGS G
Sbjct: 74  SCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   LS+  +TY    ++NN IG+PLT+   P D +  + E+GM+H GEI  +
Sbjct: 134 KTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISRM 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT------IFLNYDDSFF 232
             + +P IAVIT I  +HL      + IA AKAEI   +    +      + L+  D F 
Sbjct: 194 ALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFT 253

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGIGY 290
             +           +   G+  ++   + K       +     V   G   +V     G 
Sbjct: 254 TFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGK 313

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +    L +  IL    D A  AL        R +  +         +ID+SYNA P
Sbjct: 314 ACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKPHLP---LIIDDSYNAAP 370

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           AS+  A+ VL Q +    GRRIA+LG++ E+G  +   H  +   ++  N+  V   G  
Sbjct: 371 ASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGSD 428

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                + A       S  + Y   +D     ++  L   DV++VK+S S    + +
Sbjct: 429 HAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFV 484


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/474 (24%), Positives = 205/474 (43%), Gaps = 20/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G      ++ +  DSRS+    +  FFA+K    DG ++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITG 115
               +G    VV  ++V    +   P      V   L AL +LA   R      I+ ITG
Sbjct: 58  ELYARGVRNFVV--EVVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITG 115

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+
Sbjct: 116 SNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +++P I V TT+  AH  NF  +E     K ++F   E    I  + D+      
Sbjct: 176 MALRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFHDTEA---IVYSADNEVMAQC 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQ 294
            ++    G K  +S  K+  A F ++  ++   ++ +    +G++  +     I     +
Sbjct: 233 LSQYDYKGQKLDWSV-KNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVE 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +    +   L     T  + ++   P      R      Q   TLI++SYN++  S+ 
Sbjct: 292 NSITCAVVSLHLGLTPATISERMAQLEPVA---MRLEVKEGQHGCTLINDSYNSDFNSLD 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +LA 
Sbjct: 349 IALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQ 408

Query: 415 KDALPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + A       H+  T++      + ++L D +V+++K +   GF RL  LL+++
Sbjct: 409 RSAFKHLGEKHFFATVNSFIHSDVFANLHD-EVILLKGARQFGFDRLTELLVKK 461


>gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 477

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 214/449 (47%), Gaps = 26/449 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASI 78
               ISIDSR I  +E F AIKG ++DGH+FI +A+++GA  ++       V   +   +
Sbjct: 42  EFERISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIV 101

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                    V + + A++ +A   R R +  +I ITGSVGKTTTKE+L   L    +T +
Sbjct: 102 FGTDFSFIKVPNTILAMHDIARGFRQRIE-KVIGITGSVGKTTTKEILKTLLKG-YQTVS 159

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NN IG+PL+L R   +  FGIFE+ M   GEI  L  +  P I +IT IA +H+ 
Sbjct: 160 TFGNFNNEIGLPLSLFRAKKNDKFGIFEMAMRSKGEISQLCSIAMPDIGIITRIAESHIG 219

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL---KAKSHALGIKTIYSFGKSKN 255
               +E IA AK EI + ++     FLN++  +   +     K      K +  FG  K 
Sbjct: 220 LLGSMENIARAKGEILDFVDS---AFLNFNCKYSRKIFGEMLKDKKGKPKEVIWFG--KE 274

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +D  ++  +     S +E+  +  +  +    I     + +L ++ +   L  D +    
Sbjct: 275 SDLYIKSHEIFIHGSRLELSGRFGNFVLRAPNIFLPQFEPLLASVAVARFLGLDWNEIND 334

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  +HP +GR    +     G   +ID+SYNA   S    +  +  +   G  R+I V 
Sbjct: 335 NLQGYHPLQGRFLIKKL----GDQIVIDDSYNATCTSFLKGLETIKSLK-FGNRRKIFVF 389

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-MDGLF 434
           GD+ E G+ S+  H  + + +   +   V+  G   +    ++ R+  + +    +D + 
Sbjct: 390 GDILEAGDKSRDLHKKVIKKIEELDPFLVYFVGTEFV---KSVGRNSKLRFKNLGIDEVK 446

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +   L   D+V +K SNS   ++++ L
Sbjct: 447 EDLAKILSKEDLVYIKGSNSTKTWKVLEL 475


>gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 437

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/420 (25%), Positives = 183/420 (43%), Gaps = 20/420 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 2   IAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLL 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +L +P   V +   AL ++A   +      +IA+TGS GKT+ K +L   
Sbjct: 60  VDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAI 115

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   +      YA  G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP
Sbjct: 116 LAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242
            +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  L
Sbjct: 176 DVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPL 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +A+   R+ +  +  +   +        VV    G H   N L   G+
Sbjct: 236 QGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNVLNALAATGL 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      GR   +  A       LID+SYNANP S+ AA      
Sbjct: 296 ALGAGIALPIIAAGLAQATQVAGRQIAHTLAT---GAVLIDDSYNANPGSLDAA----ID 348

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G  + + H           ++ ++  G    A + +   ++
Sbjct: 349 ALAAAPGEGWLVLGDMRELGPEAPALHAAAGPPAGNRKLARLYALGALRPAAQRSATAAV 408


>gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
 gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
          Length = 433

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 195/442 (44%), Gaps = 31/442 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+ G  ++G+ F   A++ G    VV+    A+          V 
Sbjct: 16  ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEPQYANADDDR--YLMVP 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R +  A II ITG+ GKTTTKE++   L+         G++NNHIGV
Sbjct: 74  DSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQGNFNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + + G+ E+G +H GEI  L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVGVIEMGANHPGEIACLAGIAEPDCGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K E+++ L  +   T+F++ D+ +               +  +G     +      +  +
Sbjct: 194 KGELYDFLRTKLKSTVFIDNDNPYL------CDISQGLNLVRYGCRPAENL---LIEGQA 244

Query: 268 EQSWMEVQLQGKS-----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             S   +Q + +       +V    IG +   N+L    +    +   +    ALS + P
Sbjct: 245 ASSTPLLQFRWRHSTDAWHDVGTQLIGSYNLTNLLAAACVGLYFSIAPEQIDHALSHYTP 304

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +    A N+    LI ++YNANP SM AA++   ++      +++A+LGDM E+G
Sbjct: 305 GNNRSQLAVTAHNR----LIIDAYNANPTSMNAALTNFEEMDVP---KKMAILGDMKELG 357

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            +S + H  L + L    I  VWL G                     ++ +   ++    
Sbjct: 358 TVSHAEHQKLVDGLRHSTIHTVWLVGEEFG------QTETDFRKFRNVEEVKQALEKERP 411

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +G  +++K S+    Y L  +L
Sbjct: 412 EGYHILIKGSHGTRLYTLPEVL 433


>gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 456

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 193/441 (43%), Gaps = 16/441 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              IS+DSR+I   + F AIKG ++DGHDF+   ++KG   VV+   M   +     P +
Sbjct: 28  FKNISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVIRDGMQHLLPEKF-PYW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V + L +  KLA+  R      ++ ITGSVGKTTTKEM+   L  + K      +YNN 
Sbjct: 87  LVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLTQLNYNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV  T+          I E+GM  LG+I  L+    P IAVIT I  +H+      E I
Sbjct: 147 IGVGRTILDSDFKDKILIIEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265
             AK EI + L+ +G + +  +D F E    K+ +  I  +     ++  D    +    
Sbjct: 207 TYAKCEITKYLKPSGVVIIPANDLFLEETLKKNWSGRIIKVDLLDINQKVDSINKKNLIG 266

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +S   + ++ K  E+     G+H A N L    +      +        + F+    
Sbjct: 267 FFNRSNNSIIIEDKLFEISLK--GFHNAFNFLFVYAVAKEFGIEFKD----TNKFNFLTL 320

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+       +    + DE+YNA+P S+KA I  L     +       + G + E+G  S
Sbjct: 321 DGRNKIIKSKK--TVIYDETYNASPESLKACIINLLNNPNNH----FLIFGSIQELGSKS 374

Query: 386 QSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + +H +L + +   +I            +   D L +S    +   ++ + + I      
Sbjct: 375 KKYHKELFDFIVKSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGITINKYTKK 434

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           GD ++VK S +     ++  +
Sbjct: 435 GDFILVKGSRNWQLESILKSI 455


>gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 468

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 197/439 (44%), Gaps = 20/439 (4%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV---D 89
           DSR++ P + F A +G   DGH +I  A+ +GA +V+     V+       P        
Sbjct: 37  DSRAVEPGDGFAAFQGESTDGHLYIESALARGASVVLAERGRVSEKLPAQWPQVTFIFGH 96

Query: 90  DVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
               AL +LA A   RL     + A+TGSVGKTTT+  L   +S+ ++T+A  G+YN  I
Sbjct: 97  RSETALAELARAYLVRLPDLKHVAAVTGSVGKTTTRSFLARIMSASQRTHAASGNYNTLI 156

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G  + +   P DV   + E+G +H GEI  +     P  A IT +APAHL  F  ++ + 
Sbjct: 157 GCSVAVLSAPFDVQCLVLEMGANHPGEIAQMVSFFPPTAAAITEVAPAHLEGFGSVQGVL 216

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC 266
             KA IF G        LN D+     L ++ +      + +FG+  +  F+  + +   
Sbjct: 217 REKAGIFGGGRLKD-AVLNADNPLLAELASQINT----PVTTFGRDGSLSFEDDRLEWDE 271

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +    +   G  + V     G H    +   L +   +      A++    F    GR
Sbjct: 272 GFKVSARLCYSGDRVPVSVRLSGKHGLYPLCCALALAVRMGVPFRQAVREAVSFESLPGR 331

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+  R    Q    LIDESYNA+P SM AAI  L ++     GR+ A+LG M E+G  + 
Sbjct: 332 GEVVRL---QNGAFLIDESYNASPKSMTAAIQSLGEVQ--IRGRKFALLGSMGELGAGAS 386

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + EV            G    +   A   ++   + E    +      +L  GDV
Sbjct: 387 AAHQQVMEVARGQGFDWWGAYGSDWQSGAKA-TDNLLTDWEEVRRAVAGL---NLRSGDV 442

Query: 447 VVVKSSNSCGFYRLINLLL 465
           ++VK S++CG  RL+  L 
Sbjct: 443 LLVKGSHACGLERLVKELK 461


>gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 465

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 198/457 (43%), Gaps = 30/457 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  +  DSR   P   F  + G   DGHDF   AV++GA  V+ +      +  ++ PV
Sbjct: 1   MVTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASR----PLPDVAAPV 56

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D + AL  LA   R +++A ++ +TG+ GKT+ KE L   L+   KT     ++NN
Sbjct: 57  LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALNHNN 116

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+P T+     D DF + E G+SH G++  L  ++RP + +I  + P H         
Sbjct: 117 QIGMPCTVLNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLILNVGPGHTEGLGDR-G 175

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQLRK 262
           +A  KA +   L + G   ++ D  + +L++           +S G  +    AD+    
Sbjct: 176 VAWHKARLLAHLAQGGLGLVSAD--YPDLVREAGATGAKLRFFSAGAHEVEYRADYVGPA 233

Query: 263 WKQCSEQSW---MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +   E +      + L G   + V    G + A+N +       +L        + L  
Sbjct: 234 TEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLLGLSPAEIAEGLGR 293

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDM 378
                 R  R R     G + +ID++YNANP SM+  +      +    GR    VLG+M
Sbjct: 294 AQLPPQRFNRERV----GAWEIIDDTYNANPLSMRRMLET---AAGQARGRAFVPVLGEM 346

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH------VHYSETMDG 432
            E+G ++++ H +L  +L+    S V+  G H   ++  L R  +      V   E+   
Sbjct: 347 GELGAVAEALHEELGRLLADLGPSAVFWKGGHADEVRAGLARGGYDGPWLPVDGPESFMA 406

Query: 433 LFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466
            +  +    +DG    ++  K S+      L+    E
Sbjct: 407 AWRELAERKLDGKRGGLLFFKGSHFNRLETLLTAFRE 443


>gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
 gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
          Length = 975

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 196/468 (41%), Gaps = 24/468 (5%)

Query: 4   LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           L +  +L   I      IG      V+ I  DSR + P   F A++G  +D HDF+  A 
Sbjct: 496 LCSLGELRDWIGPEARLIGEA-DVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA 554

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
                           + +  +P     D L A   LA   R +    +IA+TGS GKTT
Sbjct: 555 ----AAGARALLAEQGVAACGLPGIEAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTT 610

Query: 122 TKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
             +ML   L++     +  A  G++NN +G+PLTL R+       + ELGM+H GEI +L
Sbjct: 611 VTQMLASILAAWQGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWL 670

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P +A++      H      +E +A     +   L +TG      DD+   +  A+
Sbjct: 671 ASLAEPTVALVNNAQREHQEFMHSVEAVAHENGSVLAALPQTGVAVFPADDAQTAIWVAQ 730

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-----SEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +     + +  F   + A+  +             Q  +++       EV    +G H A
Sbjct: 731 AAG---RRVLRFALREGAEAGVEAEVSGHAFYRQGQLRLQLHTPTGHAEVGLQLLGRHNA 787

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPAS 352
           +N L          A +D   + L  F P  GR    R          LID+SYNANP S
Sbjct: 788 RNALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADDRTLLLIDDSYNANPDS 847

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++AAI VL+++     GR + +LGDM E+G+   +FH ++    +   ++ +W  G    
Sbjct: 848 VRAAIDVLAELP----GRSLLLLGDMGEVGDNGPAFHAEVGTYAAQRGVAALWACGAMTA 903

Query: 413 ALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYR 459
               A   +         D +   +  ++L + D V+VK S      R
Sbjct: 904 QAVAAAQAAGLAAAKHQPDLMDFTLDAAALREFDTVLVKGSRFMRMER 951



 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 138/451 (30%), Gaps = 42/451 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           + DSRS+ P E F A  G   D   F+  A+  GA   +V  +     G     +  V D
Sbjct: 27  TADSRSLQPGEVFVAWPGAARDPRQFVAQALAAGAAAALVEAEGAQYFGFTDPRILAV-D 85

Query: 91  VLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            L AL     AA          ++A+TG+ GKT+       AL++  +    IG+     
Sbjct: 86  GLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLGAGW 145

Query: 148 GVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              L                LAR+      +   E     L E R     +  H A  T 
Sbjct: 146 PDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAI--HAAAFTN 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +   A AK  +F          L+ DD +   +         + + +  
Sbjct: 204 LTQDHLDYHGDMAAYARAKRALFVW-PGLQHAVLDIDDPYAASVLLADCRSRGQQVQTTA 262

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               AD+      Q S    + +        +    +G    +N+L+   ++     D  
Sbjct: 263 LIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLDDA 322

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               AL       GR +            L    Y   P ++  A+  L  ++   +G+ 
Sbjct: 323 AIAAALRTVRAVPGRMQML----GGIGAPLAVIDYAHTPDALYKALQALRPVTAKRKGKL 378

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SGFHVLALKDALPRSI 422
             V G   +     +          +  +   V L          G  +  L   L +  
Sbjct: 379 WCVFGAGGDRDARKRPLMAQ----AAEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPA 434

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                E          S     DVV++  K 
Sbjct: 435 QALLIEDRAAAIAQTLSHAAVHDVVLIAGKG 465


>gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110]
          Length = 459

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 201/469 (42%), Gaps = 42/469 (8%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP---------- 49
           M+ P+WT  ++ +A+     G  P   ++ ++ DSR + P   F A+ G           
Sbjct: 1   MSGPIWTVAEVARALGA--AGSFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGGFISAFA 58

Query: 50  -HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSK 107
              DG +F   A   GA  ++V       I  + +P   V D L   L  LA AAR R  
Sbjct: 59  SARDGWEFADKAEAAGAAAMIV----PHEIAGIRVPQIVVKDTLIDGLWGLARAARARFN 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I +TGS GKT+TKE     L++    YA   S+NN  GVPLTL     D    + E+
Sbjct: 115 GPVIGLTGSAGKTSTKEF----LAAYPNAYASPSSFNNFWGVPLTLCNARPDASLWVVEM 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GM+  GEI  L+ L RP +A++  + P HL     +E I   K  I  GL + G + L  
Sbjct: 171 GMNQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVSIALGLPEDGVLVLPA 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                        +     +  FG  ++A+          E   +   +  K +      
Sbjct: 231 ---------GLKASEWKGKVVRFG--EHAEVHEVTHAPHGESWQVVAMIGKKQIAFSLTP 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              H  QN L  L  +     D  T    L       GRG         G  T+ID+S+N
Sbjct: 280 GAPHRVQNALAALASIRAANLDAATLAIKLDRVGIMTGRG----VEQAVGGVTVIDDSFN 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NPAS+ AA+  L Q      GRRIAVLGDM E+G+ + S+H  L + L    I  V+  
Sbjct: 336 GNPASVAAALHSL-QARNVTGGRRIAVLGDMLELGDDAPSYHTGLTKHLD--GIDGVYCV 392

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSC 455
           G  +  L + LP    + + +    L    + S L  GDVVVVK S   
Sbjct: 393 GPLMRHLFEVLPSGKALGWHDDPATLKPGEVASLLKAGDVVVVKGSKKM 441


>gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 482

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 208/476 (43%), Gaps = 25/476 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +++QA + +         ++G +IDSR++  Q  F A +G   DG+ +   A+  GA
Sbjct: 5   TTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGA 64

Query: 66  GLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
             VV+  +    +       +  +     DD    L +LA   R ++   T++ +TGS G
Sbjct: 65  SCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   LS+  +TY    ++NN IG+PLT+   P D +  + E+GM+H GEI  +
Sbjct: 125 KTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISRM 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT------IFLNYDDSFF 232
             + +P IAVIT I  +HL      + IA AKAEI   +    +      + L+  D F 
Sbjct: 185 ALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFT 244

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGIGY 290
             +           +   G+  ++   + K       +     V   G   +V     G 
Sbjct: 245 TFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGK 304

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +    L +  IL    D A  AL        R +  +         +ID+SYNA P
Sbjct: 305 ACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKPHLP---LIIDDSYNAAP 361

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           AS+  A+ VL Q +    GRRIA+LG++ E+G  +   H  +   ++  N+  V   G  
Sbjct: 362 ASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGSD 419

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                + A       S  + Y   +D     ++  L   DV++VK+S S    + +
Sbjct: 420 HAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFV 475


>gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL060PA1]
          Length = 485

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 122/487 (25%), Positives = 193/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294
           I  F         +AD ++          ++    +  +              +G +   
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVA 298

Query: 295 NMLMTLGIVSILTADVDTA------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           N +          A  D          A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAAWAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++     +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLALERVGRD 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA2]
          Length = 485

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 125/487 (25%), Positives = 195/487 (40%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA        IIA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294
           I  F         +AD ++          ++    +  +              +G H   
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVA 298

Query: 295 NMLMTLGIVSILTADVDTA------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           N +          A  D          A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +         + R +AVLGDM E+G+ S   + +   + +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++G    +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLALERVGRE 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 488

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 122/488 (25%), Positives = 185/488 (37%), Gaps = 40/488 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK- 63
               D+  A  G          V  +  DSR+I P   F A+ G   DGHDF   AV   
Sbjct: 4   MRLADVAAATGGRLHRASGDERVTAVEFDSRAIGPGGLFLALPGERVDGHDFAAAAVAAG 63

Query: 64  ----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----------AAR 103
                      A  VVV      S     +     D    A+                A 
Sbjct: 64  AAGVLAARAVDAPAVVVPPAEARSGAGTYLAEHDPDGAGAAVLAALARLARHNVDALTAG 123

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++ +TGS GKT+TK++L   L+ +  T A  GS+NN +G P T  R        
Sbjct: 124 GPPGLAVVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELGHPWTALRADASTRHL 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---T 220
           + EL     G I  L  +  P I V+  +  AHL  F   E IA AK E+ E L      
Sbjct: 184 VLELSARGPGHIAALCRVAPPRIGVVLNVGRAHLGEFGSPEAIAQAKGELVEALPAGGDG 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   LN DD     +  ++ A     + S G+S  A  +       + ++   +      
Sbjct: 244 GVAVLNADDPAVIGMAPRTAA----RLVSVGRSAGATVRAVDVGSEAGRARFRLVSPAGE 299

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    +G H   N L    +   L A  D+   +L    P      R   A      T
Sbjct: 300 ADVALRLVGTHHVGNALAAAAVALELGATPDSVAASLGAAGPVSRW--RMEVADRADGVT 357

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +++++YNANP SM+AA++ L+ +      R  AVLG M E+G    + H ++A       
Sbjct: 358 VVNDAYNANPESMRAALTALTDL--GRGRRTWAVLGRMAELGAQEAAAHAEVAAAAGELG 415

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +  +   G                 +          +++ +  GDVV+VK+S + G  R+
Sbjct: 416 VGTLLAVGEPGYGSA--------ARHVADPAAALALLRAEVTPGDVVLVKASRAVGLDRV 467

Query: 461 INLLLEEF 468
              LL++ 
Sbjct: 468 AAALLDDL 475


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/469 (22%), Positives = 195/469 (41%), Gaps = 18/469 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     
Sbjct: 3   YTIESIAECIGARRVGEC-EATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYD 61

Query: 63  KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +G    VV  +      +       ++    V + L AL KLA   R   K  II ITGS
Sbjct: 62  RGVRNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIGITGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT  KE L   LS  ++      SYN+ IGVPL++ ++  + + GIFE G+S +GE+ 
Sbjct: 122 NGKTIVKEWLHQLLSPDRRIVRSPRSYNSQIGVPLSVWQLNEEAELGIFEAGISEMGEMN 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  +++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+       
Sbjct: 182 ALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDVVIYNGDNELISNCV 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           AKS     +  +S    +     + +  +  + + +  +            I     +N+
Sbjct: 239 AKSMLTAREIAWSRKDIERP-LYISRVTKKEDHTVISYRYLDMDNTFCIPFIDDASIENV 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L     L    D   + ++   P      R      +    LI++SYN++ AS+  A
Sbjct: 298 LNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLINDSYNSDLASLDIA 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + +   
Sbjct: 355 LDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVRSRGIDKLIGVGAEISSCTA 414

Query: 417 ALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               ++  ++    + L    +  SL   +V+++K S    F  L   L
Sbjct: 415 RFDDALERYFFPNTEALLASNLLKSLHS-EVILIKGSRVFNFDLLSEEL 462


>gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 476

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 122/478 (25%), Positives = 202/478 (42%), Gaps = 31/478 (6%)

Query: 4   LWTFHDLLQAIQGHS-----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           ++T  D++   Q        +             DSR     + F AI G   DGH FI 
Sbjct: 1   MFTLQDVIAGSQELLSMHGSLADPGHLLFQCAQHDSRQYERDDLFVAITGARVDGHRFIP 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117
              + G    +  T               V DV+ AL   A     R   T+ I ITGS 
Sbjct: 61  AIARAGGAGALCTTLSEDVPAGFL--QLVVPDVVKALQATARVRVQRQPETLKIGITGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE +   L  +  T     SYNN +G PLTL R+  +  + + E+G   +GE+R 
Sbjct: 119 GKTTTKEAIAAVLGRVAPTLKTYASYNNELGYPLTLLRLEAEHRYAVLEMGAEWVGELRG 178

Query: 178 LTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   +  P  +VITT+  AHL +F  +  +A AK+E+ + L   G  FLNYDD     +K
Sbjct: 179 LCETIACPDWSVITTVGAAHLKHFGSLANVAIAKSELVQVLSPEGIAFLNYDDPVVRAMK 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            K+ A     +  +G+   A  +    ++     S   ++++ + + V     G H    
Sbjct: 239 EKTRA----RVIYYGQGDGAAVRALHVEERGLLGSRFTLRIEDEDVPVQLRLPGTHGITT 294

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    + S     +++  ++L    P +GRG   +        TLID++YNA   S+ A
Sbjct: 295 ALAAAAVGSAANIPLESIRESLEALSPVQGRG-VVKGGAGPNGSTLIDDTYNAIRHSIIA 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
               +   +   +G+R  VLG++ E GE ++  H+     L+   + ++ + G +     
Sbjct: 354 MAQAMQATTIAPQGKRWVVLGELFEQGEHTRDEHLASGLGLAG-KVDYLVVLGDNARYYM 412

Query: 413 --ALKDALPRSIHVHYS----------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             AL+  +PR    H+S          E    +   ++  +   D++++K S      
Sbjct: 413 EGALQAGMPRKAIYHFSVDTTKSTDVEEGKRAIASLLKEKVTPDDLLLIKGSRQMRME 470


>gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanine-ligase murF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine-ligase murF
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 445

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 208/464 (44%), Gaps = 24/464 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   + + +      +  +G V G  +DSR     E F A++G H DGH ++    QK
Sbjct: 3   IMTLKQIAKILNSSLPEV--EGVVKGFCVDSRLTKKNEVFVALRGEHVDGHAYLNEVKQK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ +    +  + +  F  ++ L AL  L     L   + ++A+TGS+GKTTTK
Sbjct: 61  GALAAIVDQNYQGPVFGMHL--FRTENPLLALQML-AQKCLEKTSRVVAVTGSIGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLV 182
           E +   L     T A  G+ N+ +G+PLT+        D  + E+GM+  G++  L ++ 
Sbjct: 118 EFIKTLLEQRYVTAASQGNSNSQVGLPLTVLNHTTGTEDILVLEMGMTEPGQLSTLVNIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P ++V+TT A  H   F  +++IA  KAEIF     T    +   D   E  +  +   
Sbjct: 178 HPEVSVLTTAALVHACRFETLKDIALTKAEIFSH-SHTRLGVV---DREIEAYETIAQIG 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLG 301
             K I     S  AD+ L    +      + ++ +G+S+        G H   N+L  + 
Sbjct: 234 ECKKISFSTVSSRADYHLETVNE-----EVRLKTEGQSISLGKMCLPGKHNLHNLLAAIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +   +A+      E R +  +    +     +++SYNA+  S+K+A+  L 
Sbjct: 289 VARYFELTWNEIKQAIPFLKLPERRLQFVQ----KEGVYFLNDSYNASELSVKSALETLP 344

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +   +G +IAVLG M E+G  S   H  + E    Y +  ++  G   L + +   ++
Sbjct: 345 NATG--KGYKIAVLGSMMELGHFSDECHQRVGEFALNY-VDKMYCLGAECLPIVEVWKKA 401

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              V        L   ++ +L   DVV++K S S   ++++  L
Sbjct: 402 NRPVELFMERSELISTLKKNLKPADVVLLKGSRSKELWKILEEL 445


>gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 486

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 208/485 (42%), Gaps = 34/485 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  IG  P   V G +  DSR       F A+ G   DGH  +  A   G
Sbjct: 8   SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGSAGALG 65

Query: 65  AGLVVVN----------TDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRS----- 106
           A   +V+                    S+ +  V+D    LGAL +  +A   R+     
Sbjct: 66  AVGAIVSDLEAARSGLIQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRTAADRG 125

Query: 107 -KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + 
Sbjct: 126 ERLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVL 185

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G I +LT +    +A +  I  AH+  F  IE +A+AKAEI  GL   G   L
Sbjct: 186 EMGASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLPEGVAIL 245

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEV 283
           N      +   A    L    + +F  +   AD +  +     + +S  ++ L G     
Sbjct: 246 NA----DDARAAAMAGLAPAQVLTFSAQGGPADLRAERIVLDEAARSAFDLHLPGLDGPR 301

Query: 284 VHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L   G+      + +   + L     +     R   +   G   L
Sbjct: 302 RVQLAVAGAHNVANALAAAGLALAAGLEPELIAERLGSVSIESPH--RMDVSELSGDLLL 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+SYNAN  SM AA++  +  +  G  RR+ V+ +M E+GE S + H    E+ +    
Sbjct: 360 IDDSYNANIDSMTAALA--ALPALAGGRRRVVVVSEMLELGESSAADHARTGELAAEAGA 417

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           + +   G    AL  A  R + V   +        I + L DGD V+VK SN  G +RL 
Sbjct: 418 AMLIGIGSTQEALDAAGARGVEVVGFDDAAAAISQIDALLSDGDAVLVKGSNGSGAWRLA 477

Query: 462 NLLLE 466
           + L E
Sbjct: 478 DHLKE 482


>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
            14365]
 gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
            14365]
          Length = 1035

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 130/526 (24%), Positives = 202/526 (38%), Gaps = 74/526 (14%)

Query: 7    FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              ++  A  G            + + ID R +AP + + AI+G  +DGH F   A   GA
Sbjct: 500  LAEMAAAAGGVLHAPEGCAEAASRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGA 559

Query: 66   GLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVAARLRSK--------------- 107
              ++V         +   L + V  VDD   AL  +A   R R                 
Sbjct: 560  CALMVERGRAPRDAAGNALKLAVIEVDDTRLALGSVARWHRARWGELPVYGCPNTGGDRD 619

Query: 108  -----------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
                         ++ ITGS GKTTTKE++  ALS+    +A   S+NN  GVPLTL  +
Sbjct: 620  GDNGDERARAAKPVVGITGSAGKTTTKELIAAALSARYAVHATRASFNNETGVPLTLLAL 679

Query: 157  PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                   + E+GM  LG+I +L  L  P +A +     AH+      E I   K+EIF  
Sbjct: 680  MPHHGAAVIEMGMRGLGQIAYLAELSAPTVAAVLNAGTAHIGVVGSAEGIVRGKSEIFAA 739

Query: 217  LEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKS----KNADFQLRKWKQCSE--- 268
            L + G      DD    E  +A    L        G        A+     +        
Sbjct: 740  LGEGGVAVYPGDDERLSEYARAAGRVLRFTQALPSGDEVPTPAPAEVCAVAYAPAHRAGP 799

Query: 269  ------------------------QSWMEVQLQ------GKSMEVVHHGIGYHMAQNMLM 298
                                     + +++++Q       + + V    +G H A N   
Sbjct: 800  GAATDAATDAATGAATGAATKVLVGADIDLRVQLSPADDARVVRVPLALVGRHNAANAAC 859

Query: 299  TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             L          + A  A+    P   RG+    A       ++ + YNANPASM+AA++
Sbjct: 860  ALACAIAAGVSAEDAAAAMGRARPPALRGQVRELA----GRRVLVDCYNANPASMRAALA 915

Query: 359  VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             L++++     R +AVLGDM E+G+ +   H ++ ++    ++  V   G H  AL  A 
Sbjct: 916  TLTELARADGSRALAVLGDMLELGDEAARAHAEVGQMAGDLDV-AVIALGEHAAALAGAG 974

Query: 419  PRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                     + + D    F+ S    GD V+VK S      R+I+ 
Sbjct: 975  APGDDLARVAASPDEAAAFLLSHTAPGDWVLVKGSRGMRLERVIDA 1020



 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 85/485 (17%), Positives = 167/485 (34%), Gaps = 51/485 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       DL + +    +       +  +  DSR + P + F A++G   DGH ++   
Sbjct: 1   MKLATLIQDLAE-LAAVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYLPAV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           +  GA  VVV   +     +  +    V +   AL  LA   A R   +  ++ ITG+ G
Sbjct: 60  IDAGAAAVVVERAIEDPALAARVTQVIVPEGARALGVLAARMAGRPGERMRLVGITGTNG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDF 162
           KTT   ++   L +   T   IG+ +   G     A                 +      
Sbjct: 120 KTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPYTTPTALILQEALGEMVAASCTH 179

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG 221
            + E+  + L   R     V   +A  T     HL     ++   +AK  +F + L + G
Sbjct: 180 AVLEVSSAALAMERLSGTTVE--VAAFTNFTQDHLDVHGSMDAYRAAKERLFRDHLAENG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQL 276
              ++ DD     + A   A G + +          + +A+ ++   +        E   
Sbjct: 238 VAVIDVDDKAAPHMIA---AAGERRVVRVSARPGATAADAEVRVLAAETTIAGITAEFAT 294

Query: 277 QGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              S  +     +G++   N+ + + +   L     T  + +       GR +R     N
Sbjct: 295 PRGSFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPGRVERV---AN 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++ + Y   P ++ + ++ L    P  + R + V G     G+        +   
Sbjct: 352 DAGLDILVD-YAHTPDALASVLAALR---PLTQRRLLCVFGC---GGDRDADKRPKMGAA 404

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVV 448
            +      V  S         A+ D +   +   +    D   G+   +  ++  GD+V+
Sbjct: 405 AAAGADLVVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAV-PGDIVL 463

Query: 449 V--KS 451
           +  K 
Sbjct: 464 IAGKG 468


>gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA1]
 gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA1]
 gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA2]
 gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA2]
 gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA1]
 gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA1]
 gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA2]
 gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA1]
 gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA2]
 gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA1]
 gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA2]
 gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL086PA1]
 gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA4]
 gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA1]
 gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA3]
 gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA3]
 gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL067PA1]
 gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA1]
 gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA1]
 gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA2]
 gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA1]
 gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA1]
 gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA2]
 gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA2]
 gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA3]
 gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL078PA1]
 gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA2]
 gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA3]
 gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA1]
 gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA2]
 gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA1]
 gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA2]
 gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL097PA1]
 gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA3]
 gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA2]
 gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA3]
 gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL092PA1]
 gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA2]
 gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA1]
 gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL020PA1]
 gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA2]
 gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes 266]
          Length = 485

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 194/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294
           I  F         +AD ++          ++    +  +              +G H   
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVA 298

Query: 295 NMLMTLGIVSILTADVDTA------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           N +          A  D          A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +         + R +AVLGDM E+G+ S   + +   + +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++G    +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLALERVGRE 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 194/467 (41%), Gaps = 14/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   +   I     G      +  I  DSRS+    +  FFA+     +GH +I    Q
Sbjct: 3   YSIEKVTTLIGARRYG-TKNAQIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQ 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV+   +             V D   AL +LA   R      I+ ITGS GKT 
Sbjct: 62  RGVRNFVVSAVPVGYDKLYPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ IGVPL++  M      G+FE G+S  GE+  L  +
Sbjct: 122 VKEWLYQLLSPQFYVTRSPRSYNSQIGVPLSVWLMNEQTQVGVFEAGISKPGEMNALRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P IAV+T +  AH  NF  IE+    K  +F   E   T+    DD     +  +   
Sbjct: 182 IQPTIAVLTNLGDAHQENFGLIEDKCREKLILFHDAE---TLIYPADDEIISKVITEYDY 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G +  +S  K K A F ++  ++    + +    +GK        I      N ++   
Sbjct: 239 PGERLYWSM-KDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFIDEASVVNSIVCAI 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    D   + +    P      R      Q   TLI++SYN++  S+  A+  ++
Sbjct: 298 VSLHLGVTPDVLDQRMQQLEPVA---MRLEVKEGQHGCTLINDSYNSDINSLDIALDFMN 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +   H    R  VL D+ + G  +   + +++ +     ++ +   G  +   +DA+ + 
Sbjct: 355 RRPDHQGRSRTLVLSDIDQSGREASELYREVSNLAVKRGVTKLIGIGPQLTEQQDAI-KV 413

Query: 422 IHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              ++  T++      +  +L D +V+++K +   GF  L  LL ++
Sbjct: 414 TQKYFFPTVEAFIKSGVFQALRD-EVILLKGARRFGFDSLSELLEQK 459


>gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
 gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
          Length = 525

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 126/504 (25%), Positives = 203/504 (40%), Gaps = 51/504 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +T  ++ + + G  + I PQ      V G +  DSR++ P   F A+ G   DGHD    
Sbjct: 4   YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAA 63

Query: 60  AVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDD--------VLGALNKLAV 100
           AV             G   +VV+ +  ++  +L+  +    D         L  L K   
Sbjct: 64  AVAAGAVAVLAARPVGVSAIVVSPEPDSTADALTGVLEHDADGSGAAVLAALAKLAKAVA 123

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A  +    TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     
Sbjct: 124 AELMAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATRST 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +
Sbjct: 184 DYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQAVPAS 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIK----TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           G + LN DD     +   + A  ++    T    G +   D            +    + 
Sbjct: 244 GVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDVWAGPVSLDRLARPQFTMH 303

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + +V     G H   N L    +     A V     AL+   P      R R +  
Sbjct: 304 AGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPVS--RHRMRVSTR 361

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPH--------------GEGRRIAVLGDMCEM 381
               T+ID++YNANP SM+A +  L+ I+                   R  AVLG+M E+
Sbjct: 362 PDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPGVRPQSRRSWAVLGEMAEL 421

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDAL----PRSIHVHYSETMDGLFL 435
           G  + + H  +  +    ++S + + G    + A+                    D    
Sbjct: 422 GADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAIYHGAVMEGSWGTEAVSVPDRDAALA 481

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYR 459
            +++ +  GDVV++K+SNS G   
Sbjct: 482 LLRAEIQPGDVVLIKASNSAGLGE 505


>gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL074PA1]
 gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA1]
 gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL007PA1]
 gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL056PA1]
 gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA1]
 gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL045PA1]
 gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA1]
 gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL038PA1]
 gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA2]
 gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA2]
 gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA1]
 gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL099PA1]
          Length = 485

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 194/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294
           I  F         +AD ++          ++    +  +              +G H   
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVA 298

Query: 295 NMLMTLGIVSILTADVDTA------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           N +          A  D          A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +         + R +AVLGDM E+G+ S   + +   + +      
Sbjct: 359 NPDSMAASLTSMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++G    +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLALERVGRE 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 510

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 124/481 (25%), Positives = 198/481 (41%), Gaps = 30/481 (6%)

Query: 6   TFHDLLQAIQGH----SIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  DL + +  H     +       V   + ID+  + P   F  + G H DG D    A
Sbjct: 21  TTGDLAELVSAHGTPCRLQGSAAVPVGPQVVIDTHQVTPGALFVGLPGEHVDGADLAPQA 80

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSV 117
              GA   +V  D+        +P   V+D    L AL    VA  L       AITGS 
Sbjct: 81  AGAGAAAALVGHDVT-----AGLPRLIVEDAGRGLSALATGVVATELARGLITFAITGSS 135

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L +   T +  G++NN IGVPL+   +     + + E+G    G++  
Sbjct: 136 GKTSTKDLLAQVLEATGPTVSPAGNHNNEIGVPLSACGVDATTRYLVSEMGSRGKGDVAT 195

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +V P I+ +  +  AHL  F   + IA AK EI E L   G   LN DD     +  
Sbjct: 196 LCRIVPPRISTVLNVGTAHLGEFGSQDAIAEAKGEIVEALPADGWAVLNADDPRVAAMAP 255

Query: 238 KSHALGIKTIYS-FGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSMEVVHH----GIG 289
           +++A   +   +   ++ +A+  +      ++   +   ++++        H      IG
Sbjct: 256 RTNAHIARWTTTGAARASDAELFVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLIG 315

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N      +      D      +LS    +     R      +G   LI++SYNAN
Sbjct: 316 AHQVLNATAAATMALAAGLDPAAVAASLSTATTRSPL--RMELHELRGGIALINDSYNAN 373

Query: 350 PASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           P SM AA+  ++ +       +   R IA+LG+M E+G  S   H  +A + +   I  V
Sbjct: 374 PDSMAAALHAVAAMGAARHDEYPRARTIAILGEMGELGTQSARLHARVARLAADLGIDIV 433

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G H   +  A         +   + +   +   LV GD+V+VK+S S     +   L
Sbjct: 434 IALGDHAGTMAQAAREGGAQARAARKEEVADSL--ELVPGDIVLVKASRSMALEDITAQL 491

Query: 465 L 465
           L
Sbjct: 492 L 492


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 206/467 (44%), Gaps = 17/467 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              +   I    +G   +  ++ +  DSRS+    +  FFA++    DGH++I    ++G
Sbjct: 5   IERVATLIGAQRLGNT-EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRG 63

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               VV      +     +     V     AL +LA   R      I+ ITGS GKT  K
Sbjct: 64  VRCFVVEEVPERAAELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS          SYN+ IGVPL++  +      G+FE G+S  GE++ L  +++
Sbjct: 124 EWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNSHSQLGVFEAGISQKGEMQALHDIIK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH  NFS  EE    K  +FEG E    +  N DD+    +  +++  G
Sbjct: 184 PTIAVLTNIGSAHEENFSTPEEKCREKLRLFEGAE---IMVYNADDALVTHVLNETNNGG 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S   S  A F  +  KQ +  +   +   G+        I      N ++   + 
Sbjct: 241 QHLAWSTKSSDAAMFVTKIDKQPTHTTIHYIYKGGEPASYSLPFIDEASVCNSIICATVC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D  T  + +S   P      R          TLI++SYN++  S+  A++ +++ 
Sbjct: 301 LHLGLDAHTIGERISKLEPVA---MRLEVKEGLNGCTLINDSYNSDINSLDIALNFMNRR 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H   +R  VL D+ + G      + +++ ++    +      G  + A K+ +  +  
Sbjct: 358 PDHNGQQRTLVLSDILQSGLPDAELYREVSSLVEQRGVQKFIGIGPKICANKECIALAEQ 417

Query: 424 VHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEE 467
            H+  ++D    FI+SS+  G   +VV++K + S GF +L  L++++
Sbjct: 418 -HFFASVDE---FIRSSVFKGLHNEVVLLKGARSFGFDQLTELMVKK 460


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/473 (22%), Positives = 197/473 (41%), Gaps = 24/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 12  YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70

Query: 63  KGAGLVVVNTDMVASIG----------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV ++    +           +       V + L AL KLA   R   +  ++ 
Sbjct: 71  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 130

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 131 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 190

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 191 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S    +     + + ++  + + +  +            I    
Sbjct: 248 SNCVGKSMLTAREIAWSMRDIERP-LYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 307 IENSLNCLAACLYLMVPADQITERMARLEPVA---MRLEVKDGKNNCILINDSYNSDLAS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 364 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 423

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        I  ++      L    +   L   +++++K S + GF  +   L
Sbjct: 424 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEEL 473


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/473 (22%), Positives = 197/473 (41%), Gaps = 24/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 20  YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78

Query: 63  KGAGLVVVNTDMVASIG----------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV ++    +           +       V + L AL KLA   R   +  ++ 
Sbjct: 79  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 138

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 139 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 198

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 199 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 255

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S    +     + + ++  + + +  +            I    
Sbjct: 256 SNCVGKSMLTAREIAWSMRDIERP-LYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 315 IENSLNCLAACLYLMVPADQITERMARLEPVA---MRLEVKDGKNNCILINDSYNSDLAS 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 372 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 431

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        I  ++      L    +   L   +++++K S + GF  +   L
Sbjct: 432 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEEL 481


>gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
 gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
          Length = 429

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 195/461 (42%), Gaps = 37/461 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +++  ++  SI +     + G SIDSR+I   E F  IKG  +DG DF   AV+K 
Sbjct: 3   FGLDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKS 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               +V   +         P   V++ LGAL +LA     +S A  +AI GSVGKTTTKE
Sbjct: 63  KTFAIVEKKVDC-------PHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTTKE 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS        + + NN IGV  TL R+  D DF + E+G+++ GE+  +     P
Sbjct: 116 LVADFLSCRYSVCRSLENENNIIGVCKTLLRV-EDEDFCVVEVGINNPGEMEEIAAFFEP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              +   +   H+ NF  I+ I   K++I     K+  +  N DD        K    G 
Sbjct: 175 DNVLFLNVTSTHIGNFENIDAIFKEKSKIIN---KSSRLVYNADDEIL-----KEAFEGK 226

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  + F    + +F+                   K  ++            +L       
Sbjct: 227 ENSFGFCFFGDCEFRAEN------------NNNVKVEDITLKKPFGLNPYTVLSGFVAAF 274

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D            +  G R R  + +     I + YNAN  SM  AI  L+++ 
Sbjct: 275 VFGGFKDETCFNDK-LKAFKPVGYRMRPEILEDKL-FILDCYNANVNSMMHAIDELAKL- 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +GR++A+LGDM E+G  S+ FH D+   L+  +I  +   G     + DA   +   
Sbjct: 332 ---KGRKLAILGDMLELGSFSERFHRDVGLYLNGKDID-LLAVGGDAFFIFDAF--NGKK 385

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +Y +T       ++  L D D+ ++K+S    F  +   L 
Sbjct: 386 YYCKTKPEAVELLKDKLTDYDIFLLKASRGMRFEDIFTRLK 426


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/473 (22%), Positives = 197/473 (41%), Gaps = 24/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 20  YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78

Query: 63  KGAGLVVVNTDMVASIG----------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV ++    +           +       V + L AL KLA   R   +  ++ 
Sbjct: 79  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 138

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 139 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 198

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 199 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 255

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S    +     + + ++  + + +  +            I    
Sbjct: 256 SNCVGKSMLTAREIAWSMRDIERP-LYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 315 IENSLNCLAACLYLMVPADQITERMARLEPVA---MRLEVKDGKNNCILINDSYNSDLAS 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 372 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 431

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        I  ++      L    +   L   +++++K S + GF  +   L
Sbjct: 432 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEEL 481


>gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA2]
 gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA3]
 gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA4]
 gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA2]
 gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL103PA1]
          Length = 485

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 121/487 (24%), Positives = 191/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG-------IGYH 291
           I  F         +AD ++          ++    +  +                     
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVA 298

Query: 292 MAQNMLMTLGIVSILTADVDT---AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            A            +  D+D       A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++     +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLALERVGRD 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 468

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 202/471 (42%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+P  +F D +   +      +          I  DSR I   + F A+KG   DGH FI
Sbjct: 1   MSPTDSFPDAMTVGKLFNCTRLCGADISLPCSIKTDSRKIEKGDIFIALKGNRSDGHSFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS--IPVFGVD--DVLGALNKLAVAARLRSKATIIAI 113
             A+ +GA  V++  + ++   S +  I  FGV   DV          A L S   I+A+
Sbjct: 61  SDAINRGAKGVILKDEEMSKFTSFNKDISFFGVPSPDVAILEASERYLAGLSSLREIVAV 120

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTKE +   L    + +   G+YN  +G  LT+   P + +F + E+G +  G
Sbjct: 121 TGSVGKTTTKEAIGKVLERTYRVHISRGNYNTLLGCCLTILVAPRNTEFLVLEMGANAKG 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  + +  RP  +VIT++ P HL  F GI+ +  AK EI         +F+N D     
Sbjct: 181 EIGEIANRFRPSSSVITSVDPVHLEGFGGIDGVLGAKLEIVTA--DCKLLFVNGDSPILN 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIG 289
               K      K I S G S +  +++       + +     + +        V     G
Sbjct: 239 SGIDKLKHRPSK-IISVGTSTSCIYRITDSSLRLDGNHYFRKITIDSPFGLKTVESKLWG 297

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                 + +   +        D   + L V     GRG   +          IDESYNA+
Sbjct: 298 KQHTLIISLAFAVGCEYGVAPDDIAQGLFVMSLPRGRGAILQSEE---GVLFIDESYNAS 354

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P S+KAAI  L  I     GR+IAVLG M E+G  +  FH ++ +  +      V + G 
Sbjct: 355 PVSVKAAIDNLCLIPSR--GRKIAVLGGMKELGSYANRFHDEILDYAAKA-ADQVLIHGS 411

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
               +        +V   + M+ +   +++ L  GDVV+VK S +    R+
Sbjct: 412 EWKGINKNYK---NVLCLQDMEDIVNHLKAILRTGDVVLVKGSRAYEMERV 459


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 120/472 (25%), Positives = 205/472 (43%), Gaps = 16/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  ++   + + I    +G   +  ++ I  DSRS+    +  FFA++    DGH +I 
Sbjct: 1   MN--YSIDKIAENINAKRLGDA-EAQISFILTDSRSLCFPEETLFFALRSERNDGHHYID 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV       S          VD+ L AL +L    R      I+ ITGS 
Sbjct: 58  ELYHRGVRNFVVEQLPDAFSSIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L+  LS          SYN+ IGVPL++  +    + GI E G+S  GE+  
Sbjct: 118 GKTMVKEWLSQLLSFDHNVTRSPKSYNSQIGVPLSVWLLNESSEIGIIEAGISKRGEMEA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V+T++  AH  NFS IEE    K  +F   + T  +    DD+       
Sbjct: 178 LQKIIQPTIGVLTSLGAAHQENFSSIEEKCKEKLLLF---KDTQALVYQMDDAIAAKCIE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNM 296
                G    +S  K+K+A   + K  + +  S +E   Q     +     I     QN 
Sbjct: 235 DFSYDGTLLGWS-EKNKDAALFVEKISKDTTTSTIEYCWQTATKGKFTLPFIDDASIQNC 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    I   L    +T  + + +  P      R      Q   TLI++SYN++  S+  A
Sbjct: 294 ITCAAISLYLGMKPETLAERMPMLEPVA---MRLEVKEGQHGCTLINDSYNSDINSLDIA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  +++     +  R  +L D+ + G+  +  + D+AE++    I      G  ++  ++
Sbjct: 351 LDFMNRRPDQQKRARTLILSDILQSGQTEKQLYCDVAELVQKRGIKKFIGIGSALMRQQE 410

Query: 417 ALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   ++ E +       + +SL D +V+++K + S GF +L  LL+++
Sbjct: 411 VFDGVEERYFFENVADFINSKVFNSLAD-EVILLKGARSFGFDQLTELLVKK 461


>gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL001PA1]
          Length = 485

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/487 (24%), Positives = 191/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG-------IGYH 291
           I  F         +AD ++          ++    +  +                     
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVA 298

Query: 292 MAQNMLMTLGIVSILTADVDT---AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            A            +  D+D       A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++     +       DV+++K+S      R+   
Sbjct: 419 IIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVILLKASRGLALERVGRD 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans]
          Length = 371

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 165/375 (44%), Gaps = 16/375 (4%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSYNNHIGVP 150
           AL ++A   R +    +I +TGS GKTT KEM+   L +        A  G++NN IGVP
Sbjct: 2   ALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVP 61

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+       + ELGM+H GEI  L+ + +P + ++      H      +E +A   
Sbjct: 62  LTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQEN 121

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +   L   G      DD+F  L ++ +     +   +FG S +AD +   +      +
Sbjct: 122 GAVLASLPADGVAVFPADDAFTPLWRSYAAQ---RKTLTFGFSADADVRCT-YAANVFGN 177

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            M V    +   +     G H  +N L  +     +    +  ++ L  F P  GR +R 
Sbjct: 178 DMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRLQR- 236

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              L      +ID++YNANP S++AAI VL+Q++      RI VLGDM E+G   + +H 
Sbjct: 237 --KLAASGALVIDDTYNANPDSVRAAIDVLAQMASP----RILVLGDMGEVGNDGRQYHE 290

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           ++        I HV   G        A        + ++++ L   + +       V+VK
Sbjct: 291 EIGAYARANGIEHVLALGELARHTVSAFGAG--AQHYDSVEALNDALAAIFAADATVLVK 348

Query: 451 SSNSCGFYRLINLLL 465
            S      R++  LL
Sbjct: 349 GSRFMKMERVVQHLL 363


>gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
 gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
          Length = 434

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 127/444 (28%), Positives = 204/444 (45%), Gaps = 29/444 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85
           V+ I +DSR    +  F  IKG   DGH FI  A++ GA  +    D    S     +  
Sbjct: 12  VDKIILDSREDCTKGLFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSELSKEYPEVRF 71

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+  + AL  L   AR      +I +TGSVGKTTT+ M+  ALS  K  +   G+ N+
Sbjct: 72  ISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETKGNANS 131

Query: 146 HIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
            +G+P+TL  M  +  +  + ELG+S  GE+  +  +    IAV T I  AHL N    E
Sbjct: 132 QLGLPITLFSMAKENKEISVIELGISIPGEMHRIGEIASCDIAVFTNIGSAHLENLKTKE 191

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                K  I EG +K  +++L   D+    L  +     I+ +   G+ K          
Sbjct: 192 NTCFEKMHILEGNQKEVSLYLPKKDAILGTLTEE----KIRAMGFLGEKK---------- 237

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  + +    K  E+     G HM  N  + + I   L       ++ L  F   +
Sbjct: 238 -------LNLFFYEKKEEIPLSVPGEHMEDNASVAMAIGLSLGLHKQKLLQGLLEFQGLK 290

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R      +    +ID+SYNA+P SMKA++ VL+     G  R+IAVLGDM E+G+ 
Sbjct: 291 GRGGRL---STEDGIMIIDDSYNASPDSMKASLKVLAS--EKGAKRKIAVLGDMNELGDN 345

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVD 443
             ++H ++ E+L    I  ++  G     ++ A+    +       ++ L L ++  +  
Sbjct: 346 EIAYHREIGELLKSLPIDALFTLGKKGEEIRKAMGEKLLPGKACFNLEELSLSLEEEIKP 405

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
           GD+++ K+SNS    ++I  +  +
Sbjct: 406 GDLLLFKASNSLSLSKVIQEIRSK 429


>gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 474

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/453 (24%), Positives = 192/453 (42%), Gaps = 16/453 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +  +Q I G  +       + G ++   R +A  + +F  K   +D    +       
Sbjct: 29  TLNQCIQIIGGTLMRGDGSRILRGANLGKPRRLAKNQIYFYSKSRSWDKQ--LAGLQSTP 86

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               V+   +  S    S+ +  V DV  A+ +LA     + +  + A+TGS GK+TT  
Sbjct: 87  PAAAVLPEGISWSSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSAGKSTTTS 146

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+T  L   ++     G+ N    +P  L R+    +F + E+GM     I     +VRP
Sbjct: 147 MVTSILKRSRRVVHTQGNLNTFTYLPSYLLRLSPGDEFLMLEMGMKSFNNIARQCRVVRP 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +  +T +  AH     G+  +  AK E+ +GL    T++LN D    + L  +      
Sbjct: 207 EVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRPGATLYLNADCLRSKQLSTRRF---R 263

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++Y+FG    AD Q    +  +     +V  +GK         G H   N L  +GI  
Sbjct: 264 GSVYTFGIRNPADIQGSNIQYSTNGVSFDVMTEGKRGRFFIPTWGDHNVLNALAAIGIAR 323

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L          L+       R +R R +  +   TLI++++NANP++MKA +SVL  +S
Sbjct: 324 ALGIGFHQIRDGLAKVKLPRMRLQRIRGSHGR---TLINDAWNANPSAMKAGLSVLRYLS 380

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSI- 422
               G  IAVLGDM E+G  +++ H ++    +  N+  +   G     +   AL   + 
Sbjct: 381 SKRPG--IAVLGDMMELGGYTRAGHREVGRFAARMNLHQLITYGQKAREIGRTALAAGMD 438

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V +      L   + S+   G V+  K+S 
Sbjct: 439 PHRVRHFSNRGALLRHLLST-PAGSVIYFKASR 470


>gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
 gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
          Length = 451

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 219/469 (46%), Gaps = 32/469 (6%)

Query: 6   TFHDLLQA---IQGHSIGIVPQGFVNG---ISIDSR-SIAPQEAFFAIKGPHYDGHDFIL 58
           +  ++++    +       + +  ++    IS DSR S    + F AIKG  +DG+ F L
Sbjct: 5   SLKNIIKVSKELNSKYSKNIEELDIDKELEISTDSRDSFDSTKLFLAIKGDKFDGNKFAL 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
               KG    +++   +    +    VF  DD +    KLA   R R    II++TGS G
Sbjct: 65  ETYNKGCRYFILSDQTINMPDN--AKVFYTDDTILFFIKLAREYRRRFNIPIISVTGSCG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+  + LS+  K     G++NN IGVP T+  +    +  + E GM+H  E+  +
Sbjct: 123 KTTTKELTHLFLSTKYKALKTEGNFNNEIGVPKTMFNLDTSYEIAVIEAGMNHKNELLRI 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +  +  +  +I  + P H+++   IE IA AKAE+F   ++     +N + +  ++LK +
Sbjct: 183 SECIEANTVIINNVEPVHIAHLGSIENIAYAKAELFNHTKENANAVINKNTNCADILKKE 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    IK I        AD  +++  +  + S+     + K +   H+ +G     N+L 
Sbjct: 243 AKRNNIKNII------EAD--IKEIVKKDDNSF-----EYKGIIFNHNLVGDFNLYNVLS 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L    I   D+      L  +  ++ R +     +N     +I++ YN+NPA++K  + 
Sbjct: 290 ALKAAEIYNIDLKKCADILLNYQSQKNRMQ----IINIKGCNIINDCYNSNPAALKNMLK 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDA 417
            LSQ     E ++IAV+GDM E    + S+H ++   ++   NI  V   G H   + + 
Sbjct: 346 YLSQ---RNESKKIAVIGDMLETETENSSYHKEIGNNINELKNIDTVIAVGEHSKDIYNI 402

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  +   +Y E        ++  L D   +++K+S   GF  +I+ + E
Sbjct: 403 V--NCEKYYFENAQSAIEKVKDFLKDNTAMLIKASLGMGFAVIIDSIKE 449


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/473 (22%), Positives = 195/473 (41%), Gaps = 24/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++      +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 12  YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70

Query: 63  KGAGLVVVNTDMV----ASIGSLSIP------VFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV ++           L +          V + L AL KL+   R   +  +I 
Sbjct: 71  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIG 130

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 131 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 190

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 191 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S    +     + + ++  + + +  +            I    
Sbjct: 248 SNCVGKSMLTAREIAWSMKDIERP-LYISRVEKREDHTVISYRYLEMDNTFCIPFIDDAS 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 307 IENSLNCLAACLYLMVPADQITERMARLEPVA---MRLEVKDGKNNCILINDSYNSDLAS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 364 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 423

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        I  ++      L    +   L   +++++K S +  F  +   L
Sbjct: 424 SCASKF--DIEKYFFPDTKALLASDVIKKLK-NEIILIKGSRNFSFDLVSEEL 473


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 203/465 (43%), Gaps = 16/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +   +L Q +    IG   Q  +     D+R+I       F  +KG    G  ++  A Q
Sbjct: 7   YNLGELAQILNAKLIGDKEQT-IEEYYFDTRTIVCPTNGLFITLKGLQKSGAYYLDEAYQ 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG    +V++         +     V DVL AL  LA   R R    +  ITGS GKT  
Sbjct: 66  KGIRSFLVSSIPAQPKDGAN--YLLVQDVLVALQMLAKHHRQRFTLPLFGITGSNGKTVV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +         SYN+ +GVP ++  +    D GIFE G+S   E++ L  ++
Sbjct: 124 KEWLYQLLWNEYNIARSPKSYNSQLGVPFSVLLIDEHNDLGIFEAGVSQPNEMQALRCIL 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P  A++T I  AHL NF     +A  K ++ E  ++   I    DD   E L + +   
Sbjct: 184 QPTTAILTNIGSAHLENFLDRRSLALEKIQLLEAAQE---IIYPADDELIEELISSNPVF 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K   +FGKS  A  QL++++  + QS +++++ G    ++         QN L+    
Sbjct: 241 DSKRRITFGKSDKATVQLKQYQTINGQSSIDIEISGVLFNIIIPFTDQASIQNALICCAS 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  +++      S F        R           LI++++N++  S+K A+  L+Q
Sbjct: 301 IYSLNKNLND---YKSKFEKLLPIEMRLEIKEAINNSILINDAFNSDLISLKNALDTLAQ 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S     R++ VL D+ +     +  +   AE+++ Y+ + + L G  + A K       
Sbjct: 358 QSRE---RKVLVLTDILQSKLADKELYQKTAELVNPYHFTEIVLIGEKISAYKKLFKS-- 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +V    + D     IQ   +  +V+++K S      ++ + + ++
Sbjct: 413 YVRAFSSTDDFLRHIQHENIHNEVILLKGSRIFQLEKISDYIEKK 457


>gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 426

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 207/445 (46%), Gaps = 30/445 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  +S+ +     F A+KG ++DG+ F   A+  GA + +V+   V S       +  
Sbjct: 4   SGIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFS----CRKIIY 59

Query: 88  VDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNN 145
           VDD L  L KLA+  R + +   IIAITGS GKTTTKE+    LS    K +    + NN
Sbjct: 60  VDDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKNNLNN 119

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  MP++    + E+G +H  EI  +  +++P    IT    AHL  F  IE 
Sbjct: 120 HIGIPLTILSMPINTQISVIEIGANHEKEIDKMCSIIKPDYGYITNFGKAHLEGFKSIEG 179

Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLR-- 261
           I   K E++  L+K    +F+N DD           ++G+K  I+S  + K ++ +++  
Sbjct: 180 IIRGKLELYNFLKKNKKVVFVNGDDPI-----QLDKSIGMKRYIFSEKEDKKSNVKIKYL 234

Query: 262 -KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                C  +S + V     + ++    IG +   N+   + I       ++   KA+  +
Sbjct: 235 WNQVGCDLKSILYVD----NTKISSSLIGNYNLYNIASAISIGKYFKISLEKIKKAVEEY 290

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            PK  R +      N+    +I + YNANP SM  A++  +    + +G +IA+LGDM E
Sbjct: 291 IPKNHRSQIM----NKKNTKIIIDCYNANPTSMIKALTFFNN---NIKGNKIAILGDMLE 343

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  S   H  +   +   NI+  +L G     +   L  S  +           + +  
Sbjct: 344 LGFYSNHEHEKIIFFIEKSNINTTFLIGDIFFNIN--LKTSQRIKKFINKKKFIEWFKKH 401

Query: 441 L-VDGDVVVVKSSNSCGFYRLINLL 464
                D V++K S       L++L+
Sbjct: 402 FTQKMDYVLIKGSRKGTLESLVDLI 426


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/473 (22%), Positives = 195/473 (41%), Gaps = 24/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++      +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 3   YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 61

Query: 63  KGAGLVVVNTDMV----ASIGSLSIP------VFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV ++           L +          V + L AL KL+   R   +  +I 
Sbjct: 62  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIG 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 122 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 181

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 182 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S    +     + + ++  + + +  +            I    
Sbjct: 239 SNCVGKSMLTAREIAWSMKDIERP-LYISRVEKREDHTVISYRYLEMDNTFCIPFIDDAS 297

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 298 IENSLNCLAACLYLMVPADQITERMARLEPVA---MRLEVKDGKNNCILINDSYNSDLAS 354

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 355 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 414

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        I  ++      L    +   L   +++++K S +  F  +   L
Sbjct: 415 SCASKF--DIEKYFFPDTKALLASDVIKKLK-NEIILIKGSRNFSFDLVSEEL 464


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/467 (25%), Positives = 202/467 (43%), Gaps = 17/467 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              +   I    +G   +  ++ +  DSRS+    +  FFA++    DGH++I    ++G
Sbjct: 5   IERVATLIGAQRLGNA-EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRG 63

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               VV      +           V     AL +LA   R      I+ ITGS GKT  K
Sbjct: 64  VRCFVVEEVPARAAELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS          SYN+ IGVPL++  +      GIFE G+S  GE++ L  +++
Sbjct: 124 EWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNSHSQLGIFEAGISQKGEMQALHDIIK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IAV+T I  AH  NF+  EE    K  +FEG E    +  N DD     +  +++  G
Sbjct: 184 PNIAVLTNIGSAHEENFATPEEKCREKLRLFEGAE---VMVYNADDDLVTRVLNETNNKG 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S      A F  +  KQ +  +   +   G+        I      N ++   I 
Sbjct: 241 ERLAWSTKSPNAAMFVTKIDKQPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVVCATIC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  D  T  K +    P      R          TLI++SYN++  S+  A+  +++ 
Sbjct: 301 LHVGLDAHTIDKRMRRLEPVA---MRLEVKEGLNGCTLINDSYNSDINSLDIALDFMNRR 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H   +R  VL D+ + G      + +++ +     +      G  + A K+++  +  
Sbjct: 358 PDHNGQQRTLVLSDILQSGLPDAELYKEVSSLAEQRGVQKFIGIGPKICANKESIRLAER 417

Query: 424 VHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEE 467
            H+  +++    FI+S +  G   +VV++K + S GF +L  L++++
Sbjct: 418 -HFFASVED---FIRSDVFKGLRNEVVLLKGARSFGFDQLTELMVKK 460


>gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans
            PD1222]
 gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222]
          Length = 1020

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 225/484 (46%), Gaps = 34/484 (7%)

Query: 4    LWTFHDLLQAIQGHSIGIVPQG-FVNGIS-------------------IDSRSIAPQEAF 43
            LWT   L Q   G  +       FV  ++                   ID R     E  
Sbjct: 536  LWTAEQLEQVTGGKWLVPPSDAWFVCSVTHKSRQLDNWNVSAPKLLAVIDRRMAMKHELS 595

Query: 44   FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
                G H+D HD +     + A  +V       + G    P+  V D L AL +L VA R
Sbjct: 596  DFTAGKHWDIHDQLPALQGRIAAAMVARPVEGLAPG---FPLLQVPDPLHALIQLGVAGR 652

Query: 104  LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDF 162
             R K  ++A+TGS GKT+   ML  A++  +K       +YN+ +G+   LA  P   D 
Sbjct: 653  NRLKGHVVAVTGSAGKTSQSLMLMAAMAKDRKVIGNSALNYNSRVGILHLLANTPPSTDL 712

Query: 163  GIFELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + E  ++ +   +F    L+RP I ++T IAP+H+     G+E +A  KA + EG+   
Sbjct: 713  VVVEAAVTAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSGQGLETVARRKANLVEGIAPG 772

Query: 221  GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            GT+ LN +  F+++   ++    +  + +FG  ++AD +L  + Q + +    +   G  
Sbjct: 773  GTLLLNREIDFYDVFLDRAKQRDL-CVVTFGAGEDADLRLVGYDQATGRVKARL-PGGGL 830

Query: 281  MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++      G HMA N L  +G+  +L  D+   ++ L  F P EGRG   R        T
Sbjct: 831  LDYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPAEGRGAVSRVEFEGCPLT 890

Query: 341  LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ++D+SYNANP SM+AA+S  + +     GRRI +LGDM E+G+ +  +H  LA  +    
Sbjct: 891  VVDDSYNANPVSMQAALSTFAGMK--VAGRRILILGDMAELGKDASRYHRGLAAQILKIR 948

Query: 401  ISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               V L G  +  L D L +S    +   +   ++ L   +   L  GD V++K+SNS G
Sbjct: 949  PDEVLLCGPLMQELWDELSKSGAGRVDGAHYPRVEVLLSNLAGHLRSGDTVLLKASNSVG 1008

Query: 457  FYRL 460
              R+
Sbjct: 1009 LGRI 1012


>gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
 gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
          Length = 478

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 137/476 (28%), Positives = 203/476 (42%), Gaps = 24/476 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+                  G  IDSR +     F A  G H DG+DF + AVQ GA
Sbjct: 5   TAADMTAITGSRLCAGPSDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAAVQAGA 64

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           G VV+  +    +          V   +D    L  LA   R R    ++ ITGS+GKTT
Sbjct: 65  GAVVLTREPSRELCSAADQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGSIGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS+  + +A IG+ NN IG+PLT+   P D    I E+GMS  GEI  L+  
Sbjct: 125 TKDMVAALLSTRYRVHATIGNRNNLIGMPLTVLSAPEDTQALILEMGMSASGEIERLSRC 184

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFFE 233
             P  A+IT I  +H+      + IA AKAEI  G+        E++  + L+ +D F  
Sbjct: 185 AAPTHAIITRIGTSHIGMLGSRDAIARAKAEIVSGMIPWSAPECERSPLLVLSSEDDFTS 244

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQL-QGKSMEVVHHGIGYH 291
            +  +        I   G   +AD  +R+ +   +  +  E+    G  ++      G H
Sbjct: 245 FISDRFAEPAGVRIALAGTRADADVTVRRCRLDDQGCASFELSFRDGCQLKANLAAPGAH 304

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             Q+  +   +   L       I   + F        R +  L  G   +ID+SYNA+P 
Sbjct: 305 AVQDAALAAALAYDLGVSPRDMI---AAFGALAITSHRQQIRLASGGAKIIDDSYNASPE 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FH 410
           SM A +     ++  G  RRIAVLG+M E+GE S+  H  +    +   +  +   G   
Sbjct: 362 SMAAGLD--LLLALSGARRRIAVLGEMGELGERSERMHALVGAYAAAKQLDLLVCVGHEA 419

Query: 411 VLALKDALPR-SIHVHYSETMDGLFLFIQ---SSLVDGDVVVVKSSNSCGFYRLIN 462
              + DA     +  H  E        +    S L  GD+V+VK S   G  R + 
Sbjct: 420 ARTMADAARLMGMPAHRIEIASSAHAVLDRFGSGLGRGDLVLVKGSRFVGLDRFVE 475


>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 446

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 207/440 (47%), Gaps = 28/440 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+IDSR +     FFA KG   DGH +I  A+ KGA   V+  +          P+  V 
Sbjct: 26  ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDENYYDANK---PLVLVK 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A+ +L      +     I ITGSVGKT+TK +L++ LS   K Y    ++NN +GV
Sbjct: 83  DTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNNELGV 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +  + + +   + IFE+G ++ GEI+ L+  ++P + +IT +  +H+  F  ++EI   
Sbjct: 143 AIVTSNIDLGAQYAIFEIGTNNPGEIKSLSEFLQPDVGIITGVGHSHIGRFGSLKEITKE 202

Query: 210 KAEIFEGLEKTGTIFLN--YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K  I EG++K G +++N   D S++         + +K    FG SK++D  + +     
Sbjct: 203 KLAISEGVKKDGVLWINDGVDTSYYNF----PEGINVKK---FGFSKDSDIYIEELNVEK 255

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E +++ V           +    H A N L  + +        +   + L  F P EGRG
Sbjct: 256 EVNFI-VNFNNFRYCFRINHPFSHFAVNALPAIALAFENQFHYEEIYRGLDKFVPVEGRG 314

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  R         +I+++YNA   ++ +A+  LS+I      ++IA+LG+M E+    + 
Sbjct: 315 EIIRTQ----NKIIINDTYNAGFEAVLSAVENLSKIDAP---KKIAILGEMAEIDGFEEK 367

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +  L   +   N  + +L G              +V Y +    L   I + ++ GD V
Sbjct: 368 LYSRLKNEVEKRNDIYFYLVGESFKD----FQSLENVSYFKDKSEL---INADILKGDGV 420

Query: 448 -VVKSSNSCGFYRLINLLLE 466
            +VK+S S  F  L+  L +
Sbjct: 421 YLVKASRSKRFEELVEYLKK 440


>gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 519

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 119/502 (23%), Positives = 201/502 (40%), Gaps = 58/502 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQG---FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   +   + G    I  P      V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIEL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--------- 106
               AV  GA  V+        + ++  P     D L  + +        +         
Sbjct: 60  HAEAAVAAGAVAVLAAR--PVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAALAKLA 117

Query: 107 ----------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
                       TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R 
Sbjct: 118 RAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPWTVLRA 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D D+ + E+   H G I  L  +  P + V+  +  AHL  F   E IA  K+E+ + 
Sbjct: 178 TADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKSELPQA 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCS-EQS 270
           +  +G + LN DD     +   + A     +   G++++     +D            + 
Sbjct: 238 VPASGVVVLNVDDPTVAAMAEVTAA----RVVRVGRAEHTEAGPSDVWAGPVSLDELARP 293

Query: 271 WMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +  +     +   V     G H   N L    +     A V+  + AL+   P    
Sbjct: 294 GFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPVS-- 351

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCE 380
             R + +      T+ID++YNANP SM+A +  L+ I            R  AVLG+M E
Sbjct: 352 RHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMAE 411

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVLALKDALPRSIHVHY-SETMD 431
           +G+ + + H  +  +    ++S + + G         H   ++ +   +          +
Sbjct: 412 LGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDAE 471

Query: 432 GLFLFIQSSLVDGDVVVVKSSN 453
                +++ L  GDVV+VK+SN
Sbjct: 472 AALELLRAELQPGDVVLVKASN 493


>gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 131/462 (28%), Positives = 208/462 (45%), Gaps = 32/462 (6%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            D+  A  G  +  +P+ +V+ I+ D+R     + F A++GPH+DGH F          L
Sbjct: 6   ADIQCATGGEWLHGMPE-WVSEIATDTRGFKSGQCFLALRGPHFDGHRFAAPIADAACAL 64

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEML 126
           +     M     SL +P   V+D L AL  +A A R++ K  T++AI+GS GKT+ + +L
Sbjct: 65  IGDARGMRYW-ESLPVPQLQVEDTLRALGDIAHAWRMQLKQTTVVAISGSFGKTSLRSLL 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               S++     A   + NN IGVP TL  +P D    + E G+S +GE+  L+ +V+P 
Sbjct: 124 QHGFSALGLHVSATTANLNNLIGVPKTLLAVPADATLALIECGISEVGEMERLSAIVQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I  AH     G+  +   KA +F  L            ++  L +  +  LG  
Sbjct: 184 VAVLTGITNAHGEGLGGLAGVVEEKAALFSHLNTG---------AWCALGEGVADQLGRH 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I     +   D +  +     +   +  Q   +  ++       H A NM +   I+  
Sbjct: 235 HISQ--PADLLDVEQSELSWRLDGQCLHFQRGDEQSQIELSLPARHWATNMHLAACIIMR 292

Query: 306 L--TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           L   A ++   +AL+ +    G   R +     G   ++D+SYNANP SM+AAI  L  +
Sbjct: 293 LMPEARLNDVAQALASWQAPAG---RMQVRTGSGGCKVLDDSYNANPVSMQAAIDTLVAM 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G RIAVLGDM E+GE S   H      L +  I  ++L G  + AL      S  
Sbjct: 350 P----GCRIAVLGDMAELGEASLGAHTG----LDVSGIDKLYLVGPKMHALAAG---SGT 398

Query: 424 VHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +          + + S      V+VK S S     ++N+L
Sbjct: 399 ARWYPDHRAAAASLSRESFGPDATVLVKGSRSMALETVVNVL 440


>gi|296534967|ref|ZP_06897261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264705|gb|EFH11036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 395

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 209/380 (55%), Gaps = 2/380 (0%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D L  L  L  AAR RS A I AITGSVGKTTTKEML   L+++  T+A + SYN
Sbjct: 1   LLRVGDTLAGLQALGAAARARSTARIAAITGSVGKTTTKEMLRHGLAALAPTHAAVASYN 60

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N  G+PLTLARMP D  +G+ E+GM+H GEI  L  L  PH+A ITT+  AH+ +   +E
Sbjct: 61  NQWGLPLTLARMPRDSAYGVLEIGMNHRGEIAPLARLAAPHVAAITTVEAAHIGHLGSLE 120

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EIA  KA+I +GL     + L  D + F  L  ++ A G++ + +FG    A+++L  ++
Sbjct: 121 EIAEEKADIMQGLAPGAPVVLPRDSASFARLAGRAEAAGLRMV-TFGADPAAEYRLLDYR 179

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +E     + L+G++  +     G H+A N L  + +   L AD    + AL+ F P  
Sbjct: 180 GGAESGLATLSLRGETHALALAAPGRHLALNALAAIALAEALGADRAGFLAALTEFRPGA 239

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R    L  G   LID+SYN  P +M+A + VL    P   GRRIAVLGDM E+GE 
Sbjct: 240 GRGGRVVLDLPGGSALLIDDSYNGQPPAMRAGLGVLGSQIPGPGGRRIAVLGDMRELGEH 299

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             + H  L   + L     V+  G  +  L DALP +    + ++ D L   ++ ++  G
Sbjct: 300 GPALHASLLPDV-LAAADMVFCCGALMRGLYDALPENRRAAHRDSSDELAPLVRQAVRPG 358

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           DV++VK S       ++  L
Sbjct: 359 DVILVKGSLGSRMAVVVRAL 378


>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
          Length = 535

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 134/533 (25%), Positives = 204/533 (38%), Gaps = 76/533 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSI----------------GIVPQGFVNGISIDSRSIAPQEAFF 44
           M P+ T   + QAI    +                          + IDSR       F 
Sbjct: 1   MMPM-TLERVAQAINATLVPASVQSEHGSPVDPSSASPSSAIPTNVVIDSRQAHEGSLFV 59

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           AI G H DGH ++      GA   +V+      I   S+    VDD + AL +LA     
Sbjct: 60  AINGEHADGHAYVATLGDSGALAAIVD----HEIPQSSVVQLVVDDTVKALGELARHNLA 115

Query: 105 RSKAT-----------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           + +A            I+ ITGSVGKTTTK++L   L  + +T A +GS+NN +G+PLT 
Sbjct: 116 QRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGELGETVAPVGSFNNELGLPLTA 175

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            ++     F I E+G +HLGEI  LTH+  P +AV+  +  AHL  F  +E IA AK+EI
Sbjct: 176 LQVGPSSRFLIAEMGANHLGEIANLTHIAPPDVAVVLKVGNAHLGEFGSVERIAQAKSEI 235

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWM 272
             G    G   LN DD     + A +  L            +        +   +  +  
Sbjct: 236 VRGEVPGGMTILNADDPHVAAMDAIAPGLVRWFGLEHATEHDDYVTADHVRMDDDGHAVF 295

Query: 273 EVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            ++    + + V  GI G H   N L    +       +   ++ L              
Sbjct: 296 TLRQSDGAYQQVRLGIPGAHNVMNALAATAVAQYFGLPLRHIVQVLEQVRAISPHRMAIS 355

Query: 332 CA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +  FTLID+S+NANP SM+A I  ++  +      RIAVLG M E+G    + H
Sbjct: 356 IVRRPERPEFTLIDDSFNANPDSMRAGIDGIAAFNAAEPMLRIAVLGAMLELGPDETALH 415

Query: 390 IDLAEVLSLYNISHVWLSGFHVLAL-------------------------------KDAL 418
             + +     ++  V   G    A                                 D  
Sbjct: 416 EAIGKYAVEQSVDAVIAVGNSNDAHLMTLATALAAGARDAHTADGAASVAEAELQPADLA 475

Query: 419 PRSIHVHYSETMDGLFLFIQSSL---------VDGDVVVVKSSNSCGFYRLIN 462
             ++ +  + + D     + + L          D  VV++K S++ G   L  
Sbjct: 476 TATVPIAVASSTDEAEQMLDAILAAHHPDGSTADNTVVLLKGSHASGLASLAE 528


>gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
 gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
          Length = 451

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 121/445 (27%), Positives = 214/445 (48%), Gaps = 25/445 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + ++ DSR+    E F A++G  +DG +FI   +++     + N +   +          
Sbjct: 27  SDVNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQKYNAR-----YAV 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYN 144
           V+     L +L+     +   T +AITGS GKTTTK+++   L +           G+YN
Sbjct: 82  VESGKKFLIELSKLILKKLSLTKVAITGSNGKTTTKDLIVHFLKNKFNDDAVLFTKGNYN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PL++ +      F +FE+G +H GEI  L  ++RP+I++IT I  AH+ NF   E
Sbjct: 142 NEIGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNISIITNIGDAHIGNFGSKE 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKW 263
           +IA  K +IF  L+      LN DD +F++L             +F  S N D   +  +
Sbjct: 202 KIAEEKKQIFNFLKTNELKILNKDDEYFQILNQSPGK-------TFCISNNNDDSDVLSF 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K C E + +E+  + +S+++     G H  QN  +    +  +  D     K        
Sbjct: 255 KSC-ELNMIELTHKFQSIKIKFQLTGQHNLQNFAIACAALINIGIDFQELEKYFGNLEST 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R++  + +    LID+SYN+NP+S+ +AI  L+Q     E  +I ++GDM E+G+
Sbjct: 314 NG---RFKKYIFKDNIELIDDSYNSNPSSLISAIDHLNQ----SEKNKILIIGDMGELGQ 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           L+  +H+ + E +    I+ V   G    A       ++ +++S T + L      ++  
Sbjct: 367 LTDQYHLQIIEEILKTKINIVLTMGKAFKAAIKKNNENLILNFS-TYEDLLDKALPAIKK 425

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
             +++VK+S   GF  +++ L    
Sbjct: 426 DTIILVKASRFMGFENIVSQLKGRL 450


>gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 473

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 107/468 (22%), Positives = 188/468 (40%), Gaps = 17/468 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-PHYDGHDFILHAVQKG 64
               L +   G      PQ  + GI    +++ P + +F +KG P  D  + IL A+ KG
Sbjct: 4   NVQTLCKVTNGVLRQGDPQQKITGIMSRCKAVKPGQVYFDVKGGPGSD--ENILVALDKG 61

Query: 65  AGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  +V++         +  I V  V  V  A        R +    ++ +TG+ GKTTTK
Sbjct: 62  AVALVISKHKKKLPFNNHKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTSGKTTTK 121

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           EM+         K      + N    VP  + R+  +    +FE+GM+  G +   + ++
Sbjct: 122 EMIASIFKKKWGKILKTEQNLNLPSFVPGHIMRLTAEHKAAVFEIGMNRRGHVAKQSRVI 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I +IT I  AH+      E +   K  I EG+ K G + +N DD     L   S   
Sbjct: 182 KPMIGIITNIGQAHVGMLGSKEAVIEEKGSIIEGIPKNGYLLINADDENSGKLDLSSFQ- 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                  FG    AD+         +    +  + GK  ++     G H   N L  +  
Sbjct: 241 --GKTLRFGIKNKADYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHNVYNALAAIAA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++L  +V    + L+ F   +    R +         LI+++YNANP S+ A + VL +
Sbjct: 299 STLLNIEVKYIKQGLAGFRRPKL---RLQLVKGINDSLLINDTYNANPDSVIAGLEVLKE 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRS 421
           ++       IAVLG+M E G  +   H  +   +    I ++   G     +   A    
Sbjct: 356 LAKDRTS--IAVLGNMLEQGVFTNEAHQRVGRRVQELGIDYLITIGKLARQIAVGARKHG 413

Query: 422 IHVHYSETMDGLFL---FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     ++ D  +    +++  +    V + K S +    +++  L +
Sbjct: 414 MPEEKIKSFDQRYEGSFYLKKHMPHRAVCLFKGSRAVYLDKMVEYLKD 461


>gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 484

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 205/453 (45%), Gaps = 9/453 (1%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFF---AI---KGPHYDGHDFILHAVQKGAGLV 68
            G  +    +    G+S     I P   +    A+   +G   D  + +    Q+GA  V
Sbjct: 23  GGWWLRPQQRQSYTGVSYLPGDIQPGHLYVQPSALSWGRGYDKD-RESLQRVKQRGARAV 81

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+  D + +     + V+   D   AL +L  AAR  +   ++ +TG+VGK+TTK  L I
Sbjct: 82  VL--DAIPAEVPEGLSVYLAPDTSLALAQLGQAARALASHPLVCVTGTVGKSTTKRGLAI 139

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+   +T+    ++N++ GV LTLA  P D +F + E              +  P +AV
Sbjct: 140 LLARCGRTHESQRNFNHYHGVTLTLADTPKDTEFSVLEFSSDLPRYTLPKALIAAPDVAV 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   H   +  +E IA  K+ +F GL+  GT  LN D  +F  + A + + G   + 
Sbjct: 200 ITEIQYDHTDCYPTLEAIADQKSLLFRGLKPEGTAVLNRDSPYFARMHAAARSYGAARVL 259

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG S  AD  L+   +      +  +   +S+       G H  +N L  L  V  L  
Sbjct: 260 TFGCSPLADVALQDCSRQRSGWQVRARCLDQSLTYTLPLPGRHDVRNSLAMLAGVVALGQ 319

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D +  + A S   P          A+  G   LID+S+++NPAS++AA+  L+  +    
Sbjct: 320 DPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLIDDSFSSNPASLRAALETLALQAEGSP 379

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           GRR+ VLG + E+GE S + H  LA+++ L+ I  V+  G H      ALP  +   ++ 
Sbjct: 380 GRRLLVLGAIDELGERSDALHASLADLILLHRIDRVYAYGSHTRHTCAALPDHLVALHTT 439

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               L   + + L   D +V+K S       L+
Sbjct: 440 EARELTQVLMADLQPDDWLVLKFSRHSRLGELL 472


>gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 405

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 203/468 (43%), Gaps = 72/468 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T  +L+    G  I  + + F   +SI+S+   P   FFAI      G+D+   A
Sbjct: 1   MNKLNTLEELI----GKKIFSLKEDF--KVSINSKEATPNSVFFAI----NKGNDYAKEA 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA ++    ++    G        V+D +  + + A   R  +K  +I ITGS GKT
Sbjct: 51  ESMGAFVIYDKKELDIHNGHY------VEDSVKFMQEFARRYRKNNKFIVIGITGSNGKT 104

Query: 121 TTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T K++L   LS+   + Y   G+YNNHIG+P T+       +  + E+GMS+LGEI  L 
Sbjct: 105 TVKDILHSVLSNKGVRVYKTQGNYNNHIGLPFTILSAKDSDEILLLEMGMSNLGEIDLLG 164

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++ +P  ++IT I  +HL     +E +  AK EI     K   + +N  D F   L    
Sbjct: 165 YIAKPDYSIITNIGQSHLEYLKTMENVFKAKTEIIPHTSKK--VVVNGKDEFLSKL---- 218

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                                            +  ++ ++ ++  + +G H   N+ + 
Sbjct: 219 ---------------------------------DGVIKVETKDIKTNLLGDHNLLNVSIV 245

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             ++  +  D              +GR +       +G +T I+++YNA+P SMKA++  
Sbjct: 246 DSLLKYMGFD----DLCYENIELTDGRFQIV-----KGKYTYINDAYNASPISMKASLET 296

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S+I    E  +I  LGDM E+G   + +H DL+ VL   N   ++L G  +  L + L 
Sbjct: 297 FSKI--CNESFKIIALGDMLELGSDEKKYHEDLSYVLRETNFDRLFLYGKRMKYLYEKLC 354

Query: 420 R----SIHVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLIN 462
                S    Y +  + +   I +   +   VV++K S S     ++ 
Sbjct: 355 NLDDISFKFEYFDNKEDIKKAIDNIETIKEKVVLLKGSRSMKMEDIME 402


>gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
 gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
          Length = 422

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/436 (25%), Positives = 188/436 (43%), Gaps = 27/436 (6%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P   F AIKG   DGH +   A+ KGA  VV    +          +  V+D +
Sbjct: 10  DSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKLQHIPEE---KLITVNDTI 66

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L   A     +    +I ITGS GKTTTKE+L   L    + +   G+ N  IG+PL+
Sbjct: 67  EFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGK-DRAFRNPGNLNTEIGLPLS 125

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        F I E+ M+  G+I  L  +  PH+A++  +  AH       E I   K +
Sbjct: 126 ILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILLNVGTAHRGIAGNQEMILRGKLQ 185

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E ++K GT  + YD    + +        +K + +FG  K  D+QL  +      +  
Sbjct: 186 LIENMQKNGTAIVLYDKKLLDRI-------SLKPMVTFGYKKG-DYQLVDYCYIDFSTKA 237

Query: 273 EVQLQGKSMEVVHHGIGYH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +   + +      I       N+   L  + IL   +D     L  F P  GR +   
Sbjct: 238 FYKTPREQLIFNLKSIWNAGQLTNISAVLAALDILG--IDCNKNILENFTPVAGRFRVMN 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           C        ++D++YNA+  S + A+  + ++      R  AV+G + E G+ S   H  
Sbjct: 296 C----NGIYVVDDTYNASIESFETAVETIKKL----GKRSFAVVGSIKEQGKYSIETHRK 347

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L E+L   +   V+     +    + +  S  +  S +   +  F++  L+ GDVV+ K+
Sbjct: 348 LGEILEKLDGVVVYNVDNEI----EIMNCSKKIFASNSATEISDFLKRILIPGDVVLFKA 403

Query: 452 SNSCGFYRLINLLLEE 467
           S S    +++ +  EE
Sbjct: 404 SRSVQIEKVLQIYTEE 419


>gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
 gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
          Length = 533

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 118/497 (23%), Positives = 198/497 (39%), Gaps = 57/497 (11%)

Query: 6   TFHDLLQAIQGHSIGIV-PQG---FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T   +   + G    I  P      V G +  DSR++ P   F A+ G   DGHD    A
Sbjct: 5   TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDHAESA 64

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-------------- 106
           V  GA  V+        + ++  P     D L  + +        +              
Sbjct: 65  VAAGAVAVLAAR--PVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAALAKLARAVAA 122

Query: 107 -----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R   D D
Sbjct: 123 ELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTD 182

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+   H G I  L  +  P + V+  +  AHL  F   E IA  K+E+ + +  +G
Sbjct: 183 YLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKSELPQSVPASG 242

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQC----SEQSWM 272
            + LN DD     +   + A     +    ++++     +D                +  
Sbjct: 243 VVVLNVDDPTVAAMAEVTAA----RVVRVSRAEHTEAGPSDVWAGPVSLDELARPGFTLY 298

Query: 273 EVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                G     V  G+ G H   N L    +     A V+  + AL+   P      R +
Sbjct: 299 HSHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQ 356

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELS 385
            +      T+ID++YNANP SM+A +  L+ I            R  AVLG+M E+G+ +
Sbjct: 357 VSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDA 416

Query: 386 QSFHIDLAEVLSLYNISHVWLSGF--------HVLALKDALPRSIHVHY-SETMDGLFLF 436
            + H  +  +    ++S + + G         H   ++ +   +          +     
Sbjct: 417 IAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALEL 476

Query: 437 IQSSLVDGDVVVVKSSN 453
           +++ L  GDVV+VK+SN
Sbjct: 477 LRAELQPGDVVLVKASN 493


>gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
 gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
          Length = 467

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 197/478 (41%), Gaps = 25/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G    +     V G     SR + P   F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVAVATGGRLDAVADPAAVVGAVAVDSRQVGPGTLFVALVGARSDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                   V      V +   L +P   V D   AL  LA   R  ++AT++A+TGS GK
Sbjct: 59  ------AAVAAGAPAVLAARPLGVPAVVVADPSAALAALAAHVRDIARATVVAVTGSAGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L+ +  T A  GS+NN IG+PLTL R   D  F + E+G   LG I  L 
Sbjct: 113 TTTKDLLADLLAELGPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGLGHIATLC 172

Query: 180 HLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + RP +  +  +  AH+     G   IA+AK E+ E       + LN DD     +  +
Sbjct: 173 AVARPSVGAVLNVGSAHVGEYTDGRLGIAAAKGELAEA--AQDAVILNADDPLVAAMAPR 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       + +FG+   AD +    +      +  ++   G+   V    +G H   N L
Sbjct: 231 ARG----EVITFGEDAAADVRGAGVRVDPLGHASFDLLAGGERHRVTLGLVGAHQVPNAL 286

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L         AL     +     R           +++++YNANP SM+AA+
Sbjct: 287 AAAAVALRLGLSPARTAAALGAARARSRW--RMEVTRTAAGVVVVNDAYNANPESMRAAL 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L  +     GR IAVLG M E+G+ +   H  L  +     I  V   G     +  A
Sbjct: 345 ATLVDMRGA--GRAIAVLGGMGELGDAADDAHDALGRLAVRLGIDQVIAVGPAARRIHLA 402

Query: 418 LPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                       +    D     + +     DVV+VK+S S G  R+   ++  F  +
Sbjct: 403 ASLEGSWDGESRWVADADEAVATVVALARPDDVVLVKASRSYGLERVAEDVVTRFGVV 460


>gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 201/440 (45%), Gaps = 34/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I P   FFA+KG +++G+DF L A+ +GA   VV+  M        I +  V 
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDETM-----DQDIRIIQVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL   A + R      +  +TGS GKTT KE++   LS+  KT+A  G+ NNH+GV
Sbjct: 68  DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M  D +  I E+G +H  EI  L  + +P I  IT    AH+  F G+E I   
Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187

Query: 210 KAEIFEGLEKTGTIF-LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++   +  T   +N+DDS       +S        + FG SK        WK  S+
Sbjct: 188 KSELYDFAFEHQTQVMVNFDDSL------QSEKTKDHNRFGFGHSKGG----VTWKSTSD 237

Query: 269 Q--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              + ++++ +G S  +     G+    N+     +       +     AL  + P   R
Sbjct: 238 NEFASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDIKTALEAYVPSMNR 297

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N     ++ ++YNANP SM  +I    +    G    + +LGDM E+G+ S+
Sbjct: 298 VEWRKTQYN----AVLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGKASK 349

Query: 387 SFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             H  +  EV+SL    +  L G H                 +T   L  F Q      D
Sbjct: 350 VEHEAIVREVISLDMAQNCILIGEHF------YDCDFEGLKFKTTKHLIDFWQKKGAPRD 403

Query: 446 V-VVVKSSNSCGFYRLINLL 464
             +++K S      RL+  L
Sbjct: 404 ASILLKGSRGIALERLLPHL 423


>gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
 gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 212/469 (45%), Gaps = 31/469 (6%)

Query: 5    WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            W+   +    QG  +   P +   NG+ I   ++       A  G              +
Sbjct: 571  WSASVIQSVTQGTWLTPPPSEWTANGLCIYVPAMQAGNVVVARVGET-----------DR 619

Query: 64   GAGLVVVNTDMVASIGSL-----------SIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            G  + V+       +G +            +PV  V D   A+  +   AR +    ++A
Sbjct: 620  GIPVPVIRRMHTRPVGVITSDPDVQAQLKDLPVLHVADTGKAILAMGSYARKQMSGAVLA 679

Query: 113  ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            +TGS GKTT   ML  AL++  +T A   + N   G+   LA +  D    + E+ +   
Sbjct: 680  VTGSAGKTTLVAMLADALNAYGQTAASAFNANLPHGLSWNLASINWDTPHVVLEVAV--- 736

Query: 173  GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            G +     + RP+I++ T I PAHL   S I +IA  K+ IF G+     + LN D   +
Sbjct: 737  GNMGKSALIARPNISIFTNIQPAHLGKSSTITDIARTKSMIFRGMSAGSIVILNRDMLEW 796

Query: 233  ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            E +   +    +  I ++G +  +DFQL      + +    V+++G+ +       G HM
Sbjct: 797  ETVYQAAMEQDL-NIVTYGTTAQSDFQL--VDHDALRQSATVRIRGRDITYPIGAAGLHM 853

Query: 293  AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            A N +  L  V  L   ++ A++ ++ F    GRG+     L+    T+ID +YNANP S
Sbjct: 854  ALNSVAVLAAVLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNANPGS 913

Query: 353  MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            M+AA+  L  +      RR+AVLG+M E+G  +   H DLA V+    I  V++ G    
Sbjct: 914  MQAALEHLRDMK--HARRRVAVLGEMAELGPEAPMLHADLAAVVERCGIDRVYVMGELYT 971

Query: 413  ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               + LP +    ++ ++D L   +   L D DVV++K SNS G + ++
Sbjct: 972  GFWEQLPAARRGRHTNSLDELKSALSEELADEDVVLLKGSNSTGIHHIV 1020


>gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 201/440 (45%), Gaps = 34/440 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I P   FFA+KG +++G+DF L A+ +GA   VV+  M        I +  V 
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDETM-----DQDIRIIQVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL   A + R      +  +TGS GKTT KE++   LS+  KT+A  G+ NNH+GV
Sbjct: 68  DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M  D +  I E+G +H  EI  L  + +P I  IT    AH+  F G+E I   
Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187

Query: 210 KAEIFEGLEKTGTIF-LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E+++   +  T   +N+DDS       +S        + FG SK        WK  S+
Sbjct: 188 KSELYDFAFEHQTQVMVNFDDSL------QSEKTKDHNRFGFGHSKGG----VTWKSTSD 237

Query: 269 Q--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              + ++++ +G S  +     G+    N+     +       +     AL  + P   R
Sbjct: 238 NEFASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDIKTALEAYVPSMNR 297

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N     ++ ++YNANP SM  +I    +    G    + +LGDM E+G+ S+
Sbjct: 298 VEWRKTQYN----AVLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGKASK 349

Query: 387 SFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             H  +  EV+SL    +  L G H                 +T   L  F Q      D
Sbjct: 350 VEHEAIVREVISLDMAQNCILIGEHF------YDCDFEGLKFKTTKHLIDFWQKKGAPRD 403

Query: 446 V-VVVKSSNSCGFYRLINLL 464
             +++K S      RL+  L
Sbjct: 404 ASILLKGSRGIALERLLPHL 423


>gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
 gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
          Length = 1110

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/413 (28%), Positives = 197/413 (47%), Gaps = 8/413 (1%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +    +KG  LV+ +       G        V +   AL KLA+A R   +  +I +TGS
Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQ----YLEVRNTFTALIKLALARRAAFRGRVIGVTGS 426

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTT   M+T  L    + Y  I ++N+  GVP ++A +P    + + E+GM     I 
Sbjct: 427 VGKTTVCSMVTSLLGVHGEVYKNIANFNHQPGVPKSIANIPRTARYAVIEMGMGAKRTIL 486

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               LVRPH AV+T I   H+     +  + + K EI  G+E  GT+ LN D ++F  L 
Sbjct: 487 PKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWGVESGGTVVLNRDSAYFATLH 546

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +       I +FG+   AD    +      QS ++V++  ++ +      G HMA N 
Sbjct: 547 GLALQRSDINILTFGQHPQADICAEEIVLEPVQSVIQVRVFQQTFKYTLSLPGMHMALNS 606

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKA 355
           L+ + ++     D+ T++        +  R ++ R     G    ++D+S+NANPAS+++
Sbjct: 607 LIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGARIQILDDSFNANPASIRS 666

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            + +L  + P  EGRRI VL DM EMG  +  +H  LA+ ++   I      G +  AL 
Sbjct: 667 NLHLLELMRPESEGRRILVLSDMGEMGSEALHYHTALAQDINDSQIDIFLSIGDYCHALD 726

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +   I   +  +++ L  F+Q  +  GD+V  K S       +++ L++ F
Sbjct: 727 QLIENRITHKHFNSVEALETFLQEVVRSGDIVSFKGS--AREATIVD-LVKRF 776


>gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
 gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
          Length = 443

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 128/436 (29%), Positives = 223/436 (51%), Gaps = 17/436 (3%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-----IPVF 86
           IDSR +     F  IKGP+ DGH +    + +    +++       + +L      I   
Sbjct: 16  IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSIYLKNLKNSNRVIFCN 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L  L ++     L +    I ITGS GKT+ K++L   L+  KK+Y    SYNN+
Sbjct: 76  STKDFLINLARIKRY--LLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKSYKSQKSYNNN 133

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P TL    ++ +F I+ELGM++ GEI  L+++++P++A+IT I  AHL N   I+ I
Sbjct: 134 IGLPYTLVNQNINSEFNIYELGMNNFGEIDSLSNILKPNLAIITNIGEAHLGNLGSIKNI 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AKAEI + + K GTI LN+D  FF  LK K        + SFG +  A    +     
Sbjct: 194 AKAKAEIIKNITKQGTIILNHDCKFFNQLK-KISKKNKIKVLSFGSTSKATVSYKVISLN 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +E++L     ++  + I  +M  NML+ + ++S    ++  +    +      GR
Sbjct: 253 ----EIEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFKLNIRKSKNYFNKIKNTRGR 308

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G   +    +    +ID+SYN+NP+S+K++I+   ++S   + ++I V+GDM E+G+ S+
Sbjct: 309 GNIVKF---RKEIIIIDDSYNSNPSSLKSSINQFEKLS--TKKKKILVIGDMLELGKFSK 363

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H ++   LS    + + L G     +   +  +    Y E ++    + ++ L++  +
Sbjct: 364 KKHGEIGNYLSKMGFNRILLVGKDSKEIYKKIKSTFWCKYFENINIFSKYFKNVLIENSI 423

Query: 447 VVVKSSNSCGFYRLIN 462
           ++ K+SN  G  +L+N
Sbjct: 424 IMFKASNGVGLNKLLN 439


>gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 427

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 192/440 (43%), Gaps = 41/440 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +  DSR + P  AF A+ G    G+ FI  AV +GA  V+ +     +          
Sbjct: 28  RDLVWDSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKA--------VQ 79

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D   AL +L  A R R    ++ +TGSVGKTTTKE L   L+      A  G+ N   
Sbjct: 80  VQDPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQGLA----WPAPEGNLNTPP 135

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            +      +P      + ELG+  +GE++ L  L +P I V+T IAPAHL     +E +A
Sbjct: 136 ALARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLTAIAPAHLEALGSLEVVA 195

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+++   L+ +     +            +  L +  + ++G  +   FQ R      
Sbjct: 196 REKSQL---LQASRVRIAS---------TQAARYLSLPEVRTYGFEEG-TFQGRDLTITP 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E +            +     GY  A   L  L +  +L  D+D   + L       GR 
Sbjct: 243 EGTRFRY----GQRTLHLPYPGYGPALGALAALAVAEVLGQDLDQVCQHLEALRLPPGRM 298

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R    +G    I ++YNANPAS++A +  L +      GR+I VLG M E+G  +++
Sbjct: 299 HLVR----RGGVLFIHDAYNANPASVRAGLESLDRFP----GRKIVVLGTMKELGPQAEA 350

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +H++ A + +      V+  G +   +      ++ V  +ET       +++ +  GDV+
Sbjct: 351 YHLEAARLAARVAQRAVF-VGEYAPQMARLFEGALAVTDAET---ARQALKAQVRPGDVI 406

Query: 448 VVKSSNSCGFYRLINLLLEE 467
            +K+S + G  R++    E+
Sbjct: 407 YLKASRAVGLERVLEGWDED 426


>gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 496

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 116/491 (23%), Positives = 191/491 (38%), Gaps = 36/491 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF--------- 56
             ++   + G          + G +  DSR +A  + F A+ G   DGHD+         
Sbjct: 6   LDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAAAMDRGA 65

Query: 57  --ILHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             +L A   G   V+V           A+       V  V + +  L +  V        
Sbjct: 66  AGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKLARYVVDKLSARGL 125

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I ITGS GKT+TK+++   L     T A  GS+NN IG P T  R      + + E+ 
Sbjct: 126 TVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTEATKYLVSEMS 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +G I  L  +  PHI V+  +  AH+  F   + IA  K E+ E L   G   LN D
Sbjct: 186 ARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARTKGELVEALPADGIAVLNAD 245

Query: 229 DSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQC--SEQSWMEVQLQGKSMEV-- 283
           D +   +  ++ A    T++SF    K         +    S  ++  +    + +    
Sbjct: 246 DDYVAAMADRTSA----TVWSFSTLHKPVRVAATDIRLDNLSRPTFTLIGTDSQKVTHTA 301

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L           D  T  + L     +     R           +
Sbjct: 302 QVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAH--RMDVHHAGNDVIV 359

Query: 342 IDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ID++YNANP SM+A +  L+  +       R IAVLG M E+G+ + + H++L   ++  
Sbjct: 360 IDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDATADHVELMRTVAEQ 419

Query: 400 NISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            I  V + G        +  A    +    +         +   L  GDV++VK+SN+  
Sbjct: 420 GIDLVVVVGTDENARAMINAAAAMGLRAIPTADTTQAATEVLKVLGRGDVILVKASNAYR 479

Query: 457 FYRLINLLLEE 467
            +++   ++ +
Sbjct: 480 LWQVAEAVVAQ 490


>gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 519

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 116/497 (23%), Positives = 198/497 (39%), Gaps = 57/497 (11%)

Query: 6   TFHDLLQAIQGHSIGIV-PQG---FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T   +   + G    I  P      V G +  DSR++ P   F A+ G   DGHD    A
Sbjct: 5   TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDHAESA 64

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-------------- 106
           V  GA  V+        + ++  P     D L  + +        +              
Sbjct: 65  VAAGAVAVLAAR--PVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAALAKLARAVAA 122

Query: 107 -----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R   D D
Sbjct: 123 ELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTD 182

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+   H G I  L  +  P + V+  +  AHL  F   E IA  K+E+ + +  +G
Sbjct: 183 YLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKSELPQAVPASG 242

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCS-EQSWMEVQ 275
            + LN DD     +   + A     +    ++++     +D            +    + 
Sbjct: 243 VVVLNVDDPTVAAMAEVTAA----RVVRVSRAEHTEAGPSDVWAGPVSLDELARPGFTLY 298

Query: 276 LQ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +     +   V     G H   N L    +     A V+  + AL+   P      R +
Sbjct: 299 HRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQ 356

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELS 385
            +      T+ID++YNANP SM+A +  L+ I            R  AVLG+M E+G+ +
Sbjct: 357 VSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDA 416

Query: 386 QSFHIDLAEVLSLYNISHVWLSGF--------HVLALKDALPRSIHVHY-SETMDGLFLF 436
            + H  +  +    ++S + + G         H   ++ +   +          +     
Sbjct: 417 IAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALEL 476

Query: 437 IQSSLVDGDVVVVKSSN 453
           +++ L  GDVV+VK+SN
Sbjct: 477 LRAELQPGDVVLVKASN 493


>gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris]
          Length = 494

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/489 (24%), Positives = 195/489 (39%), Gaps = 46/489 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +L +P   V +   AL ++A   +      +IA+TGS GKT+ K +L   
Sbjct: 67  VDRL----LPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   +      YA  G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP
Sbjct: 123 LAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242
            +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  L
Sbjct: 183 DVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPL 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +A+   R+ +  +  +   + +      VV    G H   N L   G+
Sbjct: 243 QGRRVLRYGLHASAEITARQLRLHAAGAQFVLVIPQGEAPVVLPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      GR   +          LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPIIAAGLAQATQVAGRQIAHTLTT---GAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G  + + H           ++ ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGPEAPALHAAAGRRARNAKLARLYALGALSAAAAQAFGDGG 415

Query: 423 HVHYSETMDGLFLFIQ-----SSLVDGD---------------------VVVVKSSNSCG 456
            V  +       L        S     D                      ++VK S    
Sbjct: 416 RVFATHAALAAALQADLAAAASQTQTQDSSLMHEHTGAVARAAASVAPPTLLVKGSRGSA 475

Query: 457 FYRLINLLL 465
             R++  LL
Sbjct: 476 MDRIVAALL 484


>gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 123/479 (25%), Positives = 216/479 (45%), Gaps = 28/479 (5%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M   LW   DL ++I     G     P  F    + DSR + P  AF AI+G   DGHD+
Sbjct: 1   MKWQLWKVSDLAESIGASWWGEDIILPDFF----TADSREVRPGAAFVAIRGNAEDGHDY 56

Query: 57  ILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAIT 114
           I  A+ +GA L++     +   +      V  V+D +  L ++A A         +IAIT
Sbjct: 57  IKDALHQGASLIIAEKGRIPQGLSIRDRAVIEVNDSVVDLARMASAYLSACLPDEVIAIT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTT+E+L      +   +    S+N  IG  LT+  MP   +  I E+G +  GE
Sbjct: 117 GSVGKTTTREVLKKCFEGMPLVFGAEKSFNTLIGCSLTILAMPAGTNVLILEMGTNKPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  +     P   +IT ++ AHL     +E + +AK EI        T+  N D+     
Sbjct: 177 IEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITRS-PHLKTLIFNADNENLAN 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289
             A     G       G  K  + ++        +   +    ++ +   +  ++ G+ G
Sbjct: 236 --AAGQVYGTCKKIGVGVRKG-EVRICQSTFDLVENLPRLKTTIRWEDGVISDLYCGLWG 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H + +++  L +   L   ++ A++ L       GRG+ +     +    +ID+SYNAN
Sbjct: 293 THNSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGRVF---STRAGAVIIDDSYNAN 349

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P+SMKA+++  S +    +GR++A+LG M E+G+     H ++    S + +  ++L G 
Sbjct: 350 PSSMKASLNTFSTV--EVKGRKLAILGSMKELGKEESVLHEEILR--STHFLDALFLVGE 405

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 + +P      +     +    + +   +  GD V++K S+S    +++ +L+E
Sbjct: 406 EWKVPLEKMPEHERSKIVIVSKVQSFAVELAKMIRSGDGVLIKGSHSHHLEKVVLILME 464


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 206/465 (44%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQ 62
           ++   + Q I   +  I     VN +  DSR I       FFA+ G   DGH+FI    Q
Sbjct: 6   YSITQIQQIIGASAT-ITHDSMVNNLLTDSRKINNPFTSLFFALSGRR-DGHEFIGDVYQ 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV    V            VDDVL AL KLA+  R +    +I ITGS GKT  
Sbjct: 64  AGVRNFVVFKLPVKVDLLRDANFLVVDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L + KK      SYN+ IGVPL++ +M    + GIFE G+S  GE+  L  ++
Sbjct: 124 KEWLYQLLCADKKIIRNPKSYNSQIGVPLSVWQMDDQHNLGIFEAGISTTGEMERLERMI 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I ++T +  AH   FSG E+    K ++F        +   YD     LLK K+   
Sbjct: 184 KPTIGILTHMGSAHDEGFSGPEKKLEEKLKLFTHCS---MVIYQYD----ALLKYKARVP 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G        K +  D  +      S + ++    +GK +E +   I     +N ++    
Sbjct: 237 GKTKFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWAT 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D   A   L    P      R          ++ID+SYN++  S++ A++ L+Q
Sbjct: 297 MLALGYDSQVADDRLERLVPVS---MRMELKQGINNCSIIDDSYNSDFQSLEIALNFLNQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            + H    R  +L D+ + G      +  +A++LS  NI  V   G  + A +      +
Sbjct: 354 QNQHQT--RTLILSDIFQSGLEQAVLYQQVADLLSQKNIDKVIGVGKAISAQQQLFNIPL 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              Y++T D L + +    ++ + +++K S S  F R+   L+++
Sbjct: 412 KYFYADT-DSLLMALADLTLEDETILIKGSRSFEFERISRALVQK 455


>gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 450

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 203/439 (46%), Gaps = 26/439 (5%)

Query: 30  ISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR +    + F AIKG  +DG+ F L    KG    +  +D    +   ++ VF  
Sbjct: 35  ISTDSRDNFDENKLFLAIKGEKFDGNKFALETYNKGCRYFI-LSDASIKLPDDAV-VFYA 92

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD +    KLA   R R    +I+ITGS GKTTTKE+  + LS+  K     G+ NN IG
Sbjct: 93  DDTILFFIKLAREYRRRFNIPVISITGSCGKTTTKELTHLFLSTKYKALKTEGNLNNEIG 152

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP T+  +    +  + E GM+H  E+  ++  +  +  +I  + P H++    IE IA 
Sbjct: 153 VPKTIFNLDDSYEIAVIEAGMNHENELLRISEAIEANTVIINNVEPVHIAYLGSIENIAY 212

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+E+F    +     +N + +  ++L+ ++    IK I        AD +    K+   
Sbjct: 213 AKSELFNHTRENANAVINKNTNCIDILEKEASRNNIKNII------EADIK-EIIKKDDN 265

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                 +  G  +   H+ IG     N+L  L    +   D+      L  +  ++ R +
Sbjct: 266 ----TFEYNG--ITFKHNLIGDFNLHNVLSALKAAELYDVDLQKCADILITYESQKNRMQ 319

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N     +I++ YN+NPA++K  I  LSQ     E ++IAV+GDM E    + S+
Sbjct: 320 ----IINIKGCNVINDCYNSNPAALKNMIKFLSQ---RSESKKIAVIGDMLETETENSSY 372

Query: 389 HIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H D+ ++++   NI  V   G H   + D +  +   +Y E        ++  L     +
Sbjct: 373 HKDIGKIINELKNIDTVIAVGKHSKDIYDTV--NCEKYYFENAQSSVEKVKEFLKYDTAM 430

Query: 448 VVKSSNSCGFYRLINLLLE 466
           ++K+S   GF  +I+ +  
Sbjct: 431 LIKASLGMGFAVIIDSIKN 449


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/463 (22%), Positives = 192/463 (41%), Gaps = 14/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   +  H  G      V  I  DSRS+       FFA++    DGH +I    +
Sbjct: 3   YTLERIASLVGAHLWG-DEAVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYR 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +G    VV+                V   L AL +LA   R      ++ ITGS GKT  
Sbjct: 62  RGVRSFVVSRLPEDMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   LS  ++      SYN+ IGVPL++  +    + G+FE G+S  GE+  L  ++
Sbjct: 122 KEWLYQLLSPERRVTRSPRSYNSQIGVPLSVWNLNEKSEVGLFEAGISEPGEMEALQSVI 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V T +  AH  NF+  E+    K ++F   +    +  + DD+       +S   
Sbjct: 182 QPTIGVFTCLGDAHQENFTSYEQKCMEKLKLF---KDAKVLVYDMDDACVAGCVNRSAFK 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G    +S  + ++    +   ++   ++ +    +GK        I      N +  L +
Sbjct: 239 GEYFAWSR-QQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +T    ++V  P      R      +   TLI++SYN++  S+  A+  +++
Sbjct: 298 CLHLGMSPETIAARMAVLEPVA---MRLEVKEGRSGCTLINDSYNSDYNSLDIALDFMNR 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                  +R  VL D+ + G   +  +  +A ++++  +      G  + A++      +
Sbjct: 355 RPDCAGRKRTLVLSDIEQAGGAPEDLYGRVARLVAMRGVEKFIGVGPCLSAVRGLF--GM 412

Query: 423 HVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +  + D L    +  +L D +V+++K + S  F  L   L
Sbjct: 413 EACFYRSTDELLGSGVLDTLHD-EVILIKGARSFRFDVLTEHL 454


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/462 (23%), Positives = 196/462 (42%), Gaps = 12/462 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
              + + Q +  +    VP   +N +  DSRS+    +  FFAI     +GH++I    Q
Sbjct: 1   MKLNKIAQIVGAND-SNVPSVEINWLLTDSRSLSFPVESLFFAIHTARNNGHNYIAELYQ 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +     VV+                V+D L AL  LAVA R      +I ITGS GKT  
Sbjct: 60  QNLRYFVVSEMHPEFEKMTDAVFLKVEDSLKALQALAVAHRNAFDIPVIGITGSNGKTVV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +         SYN+ IGVPL++  +      GIFE G+S   E++ L  ++
Sbjct: 120 KEWLYQLLHTDYVITRSPRSYNSQIGVPLSVWALSESTQLGIFEAGISEPHEMKRLQPII 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I + T +  AH  NFSG+++    K ++F+  E    +    D+   E+  A+S   
Sbjct: 180 RPTIGIFTNLGDAHQENFSGLKQKCEEKLQLFDQSE---VLVYCSDNKLVEISIAQSAFK 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+   +S+GKS  A  Q+ + ++    + + ++       V          +N L  + +
Sbjct: 237 GV--FFSWGKSDKATVQIVQKEKTVSSTKVVLKYNAVESSVTIPFTDDASIENALQCVAV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L        K + +         R           +I++SYN++  S+  A+  L+Q
Sbjct: 295 MLYLGLKTAEIAKRILLLEAVA---MRLEVKEGVRDCLIINDSYNSDLNSLSIALDFLNQ 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   +  +  +L D+ + G+ S   +  ++ ++   N+  +   G  +    D      
Sbjct: 352 QATAKKLSKTLILSDILQSGQTSDELYKTVSGLVHNKNVQRIIGIGSEISKHADIFELVD 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              + +T D L   I   L   +++++K S +  F  +   L
Sbjct: 412 KTFFEQTEDFLKSPILRELK-NEIILLKGSRTYHFEDISEKL 452


>gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 494

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 119/489 (24%), Positives = 195/489 (39%), Gaps = 46/489 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 9   IAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLL 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +L +P   V +   AL ++A   +      +IA+TGS GKT+ K +L   
Sbjct: 67  VDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAI 122

Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   +      YA  G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP
Sbjct: 123 LAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242
            +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  +  L
Sbjct: 183 DVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPL 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +  +G   +A+   R+ +  +  +   +        VV    G H   N L   G+
Sbjct: 243 QGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNVLNALAATGL 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      GR   +  A       LID+SYNANP S+ AA      
Sbjct: 303 ALGAGIALPIIAAGLAQATQVAGRQIAHTLAT---GAVLIDDSYNANPGSLDAA----ID 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G  + + H           ++ ++  G    A   A     
Sbjct: 356 ALAAAPGEGWLVLGDMRELGPEAPALHAAAGRRARNAKLARLYALGALSAAAAQAFGDGG 415

Query: 423 HVHYSETMDGLFLFIQ-----SSLVDGD---------------------VVVVKSSNSCG 456
            V  +       L        S     D                      ++VK S    
Sbjct: 416 RVFATHAALAAALQADLAAAASQTQTQDSSLMHEHTGAVARAAASVAPPTLLVKGSRGSA 475

Query: 457 FYRLINLLL 465
             R++  LL
Sbjct: 476 MDRIVAALL 484


>gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
 gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
          Length = 485

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/487 (24%), Positives = 190/487 (39%), Gaps = 38/487 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++   +    Q   + + I +R + P   F A+ G   DGHDF   A   GA  V+
Sbjct: 9   LAQWVEAAPVNDSAQVGPD-VVIGTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVL 67

Query: 70  VNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V            +P   VDD    L  L +  VA         IA+TGS GKT+TK+ML
Sbjct: 68  VTRRT-----DAQLPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDML 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I +LT +V P +
Sbjct: 123 AQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +  AHL  F   E IA AK EI E L   G   LN  D+    +  ++       
Sbjct: 183 AMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRG----H 238

Query: 247 IYSFGKS-----KNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHG-------IGYH 291
           I  F         +AD ++          ++    +  +                     
Sbjct: 239 IAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVA 298

Query: 292 MAQNMLMTLGIVSILTADVDT---AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            A            +  D+D       A ++ +       R +         L+++ YNA
Sbjct: 299 NAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNA 358

Query: 349 NPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +      
Sbjct: 359 NPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAAHAGFDV 418

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G     + +            T++     +       DVV++K+S      R+   
Sbjct: 419 IIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLALERVGRD 476

Query: 464 LLEEFPA 470
           + EE  A
Sbjct: 477 VFEEREA 483


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 190/476 (39%), Gaps = 21/476 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           ++    + + ++G  +       +  I +DSR +       F  +     + H +I    
Sbjct: 1   MYNAESISKVLKGELLQQTGNPEIEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KG    +V+  +          +  V D + AL+ L    R +    +I ITGS GKT 
Sbjct: 61  EKGVSNFIVSEPVP-EGKYPKANIILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTI 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   L           SYN+ IGVPL++ +M  +    IFE G+S  GE+  L  +
Sbjct: 120 VKEWLYQLLEKDYNIVRSPKSYNSQIGVPLSVWQMKPEHQLAIFEAGISQPGEMEHLEKI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--------SFFE 233
           +RP+I + T I  AH   F  I +  + K  +F    K+  +  + D         +F  
Sbjct: 180 IRPNIGIFTNIGEAHNEGFLNIRQKINEKLVLFS---KSDLLIYSKDYLALNECVLNFHN 236

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L+  K +  G   ++++ +   AD ++    +    S ++   Q   + +    +     
Sbjct: 237 LVGKKDNHEGGLQLFTWSRKTEADLRIISVDKSEHHSRIDALYQTIPIHINIPFVDEGSV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +    ++  L  +     + +           R          ++I++SYN++  S+
Sbjct: 297 ENAIHCWALMLHLGMEHSVIQQRMDQLGNIA---MRLELKQGINNCSVINDSYNSDLGSL 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+  L Q   H    R  +L D+ + G+   S + ++A +L    I+ V   G ++  
Sbjct: 354 AIALEFLQQQQQHPT--RTVILSDILQSGKSDASLYEEVASLLQQKGINKVIGIGKNIFR 411

Query: 414 LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            K +  +   +   +  T +             + +++K +    F R+  LL ++
Sbjct: 412 EKKSFQQITGLKSSFFLTTEEFIQQFNQQDFQHETILLKGARIFEFERIGKLLEQK 467


>gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
 gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
          Length = 1025

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 204/466 (43%), Gaps = 16/466 (3%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL--HAV 61
            WT H++  A  G  +   P+ +   G+ I   S+   +    ++G   D    I      
Sbjct: 558  WTAHNVAGATGGTWVRSPPEDWRATGLCIYRPSLQDGDM-VVMRGEE-DAERGIPPRQVN 615

Query: 62   QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +       + T    +     +PV  V +   A+  L   AR   +  +I +TGS GKTT
Sbjct: 616  RVKPQARGIITSAPQAFADAELPVLSVRNNGDAVLALGRYARSMMRGKLIGVTGSAGKTT 675

Query: 122  TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               ML  AL    K      + N   G+   LA +  D    + EL +   G ++    L
Sbjct: 676  MVAMLAQALRPWGKVGTSRLNANLPHGIGWNLASIAWDTPHVVMELAI---GRMKQNAAL 732

Query: 182  VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             RP +AV T IA AHL     +  +A  K+ IFEG+    T  LN D +    ++A + A
Sbjct: 733  ARPDVAVFTNIAAAHLEFHHDLATVARRKSAIFEGMAAGATAILNADMAELARVRALAMA 792

Query: 242  LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +  I S+G++  AD +L       + +++E +     M       G HMA N L  L 
Sbjct: 793  REL-NIVSYGEAPQADIRL----ISRKGNFLEAETPSGRMGYHLATPGRHMAVNSLAVLA 847

Query: 302  IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +  L+      + AL  F P  GRG      +      LIDE+YNANPASM AA+ +L 
Sbjct: 848  TLHALSLQPHRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEAYNANPASMAAALELLG 907

Query: 362  QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              +    GRR+A+LG+M E+G  ++ +H DLA + +  +I  V   G         LP  
Sbjct: 908  AQA---GGRRVAILGEMLELGPGAEGYHADLAPLATGLSIDVVHAVGPLYARFCADLPPR 964

Query: 422  IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++  +  L       + DGD+V+VK S+  G + ++  +  E
Sbjct: 965  HRGIHAPDLATLHALWPELIRDGDIVLVKGSHGSGVHEIVRAIQAE 1010


>gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
 gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
          Length = 370

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 170/377 (45%), Gaps = 21/377 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAVTLSEKEVSNH------PYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     + +  D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLVPADPIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRRIAVLGDMCEM 381
            +  G++IAVL DM  +
Sbjct: 344 ANEGGKKIAVLADMKGL 360


>gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein
           [UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase ( MurF);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (MurE) ] [Thiomonas sp. 3As]
          Length = 975

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 201/467 (43%), Gaps = 22/467 (4%)

Query: 4   LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L +  +L   I   + +    +  V+ I  DSR + P   F A++G  +D HDF+  A  
Sbjct: 496 LCSLGELRDWIGPEASLIGEAEVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA- 554

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                          +G+  +P     D L AL  LA   R +    +IA+TGS GKTT 
Sbjct: 555 ---AAGARALLAEQGVGACGLPGIEAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTV 611

Query: 123 KEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
            +ML   L++     +  A  G++NN +G+PLTL R+       + ELGM+H GEI +L 
Sbjct: 612 TQMLASILAAWQGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLA 671

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P +A++      H      +E +A     +   L +TG       D+   +  A++
Sbjct: 672 SLAEPTVALVNNAQREHQEFMHSVEAVAHENGAVLAALPQTGVAVFPAADAQAAIWVAQA 731

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQC-----SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                + +  F   + A+  +             Q  +++       EV    +G H A+
Sbjct: 732 AG---RRVLRFALREEAEADVEAEVSGHAFYRQGQLHVQLHTPAGHAEVGLQLLGRHNAR 788

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASM 353
           N L          A +D   + L  F P  GR    R    ++    LID+SYNANP S+
Sbjct: 789 NALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADEHTLLLIDDSYNANPDSV 848

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AAI VL+++     GR + +LGDM E+G+   +FH ++    +   ++ +W  G     
Sbjct: 849 RAAIDVLTELP----GRSLLLLGDMGEVGDNGPAFHAEVGTYAAQRGVAALWACGAMTAQ 904

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ-SSLVDGDVVVVKSSNSCGFYR 459
              A   +         D +   ++ ++L + D V+VK S      R
Sbjct: 905 AVAAAHAAGLAAAKHQPDLMDFTLEAAALREFDTVLVKGSRFMRMER 951



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 142/452 (31%), Gaps = 44/452 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S DSRS+ P E F A  G   D   F+  A+  GA   +V  + V   G     +  V D
Sbjct: 27  SADSRSLQPGEVFVAWPGAARDPRQFVTQALAAGAAAALVEAEGVQHFGFTDPRILAV-D 85

Query: 91  VLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            L AL     AA          ++A+TG+ GKT+       AL++  +    IG+     
Sbjct: 86  GLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLGAGW 145

Query: 148 GVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              L                LAR+      +   E     L E R     +  H A  T 
Sbjct: 146 PDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAI--HAAAFTN 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSF 250
           +   HL     +   A AK  +F          L+ DD +   +L A   + G++ + + 
Sbjct: 204 LTQDHLDYHGDMAAYARAKRALFVW-PGLQHAVLDIDDPYAASVLLADCRSRGLQ-VQTT 261

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 D+      Q S    + +        +    +G    +N+L+   ++     D 
Sbjct: 262 ALIAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLDD 321

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                AL       GR +            L    Y   P ++  A+  L  ++   +G+
Sbjct: 322 AAIAAALRTVRAVPGRMQML----GGIGAPLAVIDYAHTPDALDKALQALRPVTAKRKGK 377

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SGFHVLALKDALPRS 421
              V G   +     +             +   V L          G  +  L   L + 
Sbjct: 378 LWCVFGAGGDRDARKRPLMAQ----AVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQP 433

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 E          S     DVV++  K 
Sbjct: 434 AQALLIEDRAAAIAQTLSHAAVHDVVLIAGKG 465


>gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus ATCC 19977]
 gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus]
          Length = 491

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/501 (24%), Positives = 195/501 (38%), Gaps = 53/501 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            T  ++ + + G   GI  Q      V G +  DSR ++P   F A+ G   DGHD    
Sbjct: 1   MTVAEIAEIVGGRLDGISAQEARQARVTGTVEFDSRQVSPGGLFLALPGARADGHDHAR- 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-------------- 105
                 G        V +   + +P   V     A  +++                    
Sbjct: 60  ------GAAEAGAVAVLAARPVGVPAIVVPPTGVARTEVSALEHDSDGSGAAVLAATAAL 113

Query: 106 ----------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                         I+ ITGS GKT+TK+++   LS + +  A  GS+NN +G P T+ R
Sbjct: 114 AAEVARRLTARGLRIVGITGSSGKTSTKDLIAAVLSPLGEVVAPPGSFNNELGHPWTVLR 173

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                 F + EL     G I  L  +  P I V+  +  AHL  F   + IA  K E+ +
Sbjct: 174 ATESTKFLVLELSARRPGNIAELAAIAPPSIGVVLNVGTAHLGEFGSRQAIADTKGELPQ 233

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEV 274
            L   G   LN DD+    + AK+ A  ++T         AD    +       ++   +
Sbjct: 234 SLSGGGVAVLNADDAAVAAMAAKTPARVVRT----SVHHPADIWATEVSVDDLARARFTL 289

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                S+ V     G H   N L    +     A    A  A ++        +R   + 
Sbjct: 290 HAGQDSVPVQLAVHGEHHVSNALAAAAVALECGAT--LAQVAAALAGAGPVSRRRMEVST 347

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPH--GEGRRIAVLGDMCEMGELSQSFHIDL 392
                T+I+++YNANP SM A +  L  ++ H     R  AVLG+M E+G  + S H  +
Sbjct: 348 RDDGVTVINDAYNANPDSMMAGLKALVSMARHGGEPRRSWAVLGEMAELGPDAISEHDRI 407

Query: 393 AEVLSLYNISHVWLSGF-------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                  ++S + + G        H  A+ +    S  V   +        + S L  GD
Sbjct: 408 GRAAVRLDVSRLVVVGTGRSQRAMHAGAVMEGSWGSEAVL-VDDPAAAASLLASELAAGD 466

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           VV+VK+S S G + + + LL+
Sbjct: 467 VVLVKASRSAGLWVVADELLK 487


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/488 (22%), Positives = 194/488 (39%), Gaps = 37/488 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   + + I    +G   +  ++ +  DSRS+    +  FFA+     +G  +I     
Sbjct: 3   YTIESIAEYIGARRVGEH-EATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYISELYD 61

Query: 63  KGAGLVVVNTDMVASIGSLSIP-------------------------VFGVDDVLGALNK 97
           +G    VV  +    + +                                V + L AL K
Sbjct: 62  RGVRNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLKALQK 121

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA A R   K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++ 
Sbjct: 122 LAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLN 181

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F   
Sbjct: 182 EEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF--- 238

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +    +  N D+       AKS     +  +S    +     + K  +  + + +  +  
Sbjct: 239 KDCDVVIYNGDNELISNCVAKSMLTAREIAWSCKDIERP-LYISKVTKKEDHTVIAYRYL 297

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                     I     +N L  L     L    D   + ++   P      R      + 
Sbjct: 298 DMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKN 354

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++ 
Sbjct: 355 NCILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLIK 414

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCG 456
              I+ +   G  + +       +   ++    D L    I  +L   +V+++K S    
Sbjct: 415 SRGINKLIGVGAEISSCAARFEGTPERYFFPDTDALLRSGIFKTLHS-EVILIKGSRVFN 473

Query: 457 FYRLINLL 464
           F  +   L
Sbjct: 474 FDLVSEEL 481


>gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 467

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 129/487 (26%), Positives = 215/487 (44%), Gaps = 43/487 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+   +  +LL+ ++GH     P+G +  I+   DSR+I     F A++G   DGHD + 
Sbjct: 1   MSATVSALELLEGVEGHWFSSPPKGELFWINAGTDSRTILSGNVFVALRGLRTDGHDHLE 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLRSKATIIAITG 115
            A  +G  L VV       I  ++IP   V+D L AL K+     AA  R+   +I++TG
Sbjct: 61  QAAARGTTLAVVERG----IPGVNIPQIVVEDTLVALRKMGALVLAAHRRAGHRLISLTG 116

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTTT+E++   L     ++   G+ NN IGVPLTL   P    + + E+G+ + G++
Sbjct: 117 SVGKTTTRELIRTGL-PPGASHGSSGNENNEIGVPLTLLSWPPSARWCVLEVGIRNPGDM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  L+     ++T +AP HL     +E +   K+++  G+ + G   +          
Sbjct: 176 DILAPLLSADTGLVTAVAPVHLETLGTLEGVWKEKSKLLRGVVEGGCRIVP---EEIRRT 232

Query: 236 KAKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           + +       T    G S      AD                +  +GK++  +       
Sbjct: 233 EGRDPLFSDPTRRLLGVSLDRFPEADVSGE-----------LLSPEGKAVLSLRRPPLRL 281

Query: 292 MAQNMLMTLGIVSIL--------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                   LG  +++          D+ +A + +S++    GR +R     +     L+ 
Sbjct: 282 PLPWPSRALGWCALMALAALAAEGVDLASAAERISLYRGYSGRMERR---SHSSGLLLLL 338

Query: 344 ESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           + YNANPASM  A   LS+     +G R  AVLGDM E+GE SQ FH ++ E  ++  ++
Sbjct: 339 DHYNANPASMSEAFEWLSRERGIRQGARAYAVLGDMLELGEGSQGFHREIGERAAMAGVA 398

Query: 403 HVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYR 459
            VW  G    +  +   R     +           ++S    G  D+++VK S       
Sbjct: 399 GVWYRGEQKSSFVEGFLRGGGKEFQIRDASVFESDLKSGRGPGPEDILLVKGSRGMKLEE 458

Query: 460 LINLLLE 466
           ++  LLE
Sbjct: 459 VVATLLE 465


>gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 433

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 214/439 (48%), Gaps = 21/439 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI I+S+ +     FFA+KG ++DG+ F   A+  GA + +V+    +        +F 
Sbjct: 14  SGIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVDNIKYSFSHKN---IFF 70

Query: 88  VDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNN 145
           V + L +L +LA+  RL+ ++  IIAITGS GKTTTKE+ T  LS   +  ++   ++NN
Sbjct: 71  VKNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILSKKYEVVHSTEKNFNN 130

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLTL  MP +    + E+G +   EI+ +  ++ P+   IT    AHL  F  I+ 
Sbjct: 131 HIGIPLTLLSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYITNFGKAHLEGFKNIKG 190

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +   K E++  L+K         D   +L+    H+LGI   Y F +  N+D  +   K 
Sbjct: 191 VIRGKLELYNFLKKNKKKVFVNGDDPIQLI----HSLGIDR-YIFSERINSDVDVP-IKY 244

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +++ ++  L  K M++V   +G +   N+   + I +     +    KA+  + P   
Sbjct: 245 FWKKTDLKSVLCIKDMQIVSSLVGSYNLYNIASAITIGNYFKVPLKKIKKAVEDYIPNNY 304

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +       +    +I + YNANP+SM   ++  ++I     G +IA+LGDM E+G  S
Sbjct: 305 RSQILE----KENVKIIVDCYNANPSSMIETLTFFNKIQ----GNKIAILGDMLELGSFS 356

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H  +   L   NI+ ++L G            S  +      +    +I+S+ +  D
Sbjct: 357 KKEHAKIISFLEKSNINAIFLIGEIFSNTNR--NSSNRIRRFSHKNIFIQWIKSNSLKAD 414

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S       +I+ +
Sbjct: 415 YILIKGSRKNSLESMIHFI 433


>gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/414 (28%), Positives = 184/414 (44%), Gaps = 24/414 (5%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
              G  + +V   + A      I    V D   AL +L    R ++ +  +IA+TGS GK
Sbjct: 2   AANGCQVAIVERPIDAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGK 56

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + +
Sbjct: 57  TTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTS 116

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V+PH+A I  I  AHL  F G + I  AK+EI+  +   G   +   D F   ++  +
Sbjct: 117 KIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIREAA 176

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +     I SFG     D    + +   + +  ++     S  V     G H  QN    
Sbjct: 177 KS---HQIMSFG--AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAA 231

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L   ++  +K L+     +GR    + A +      ID++YNANP SM+AA  V
Sbjct: 232 VAFALALGVSLEDIVKGLAQAQGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQV 287

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDAL 418
           L Q      G ++ V+GD+ E+G+ S   H DL   L+   + H+   G F   AL+ A 
Sbjct: 288 LLQ----QNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAG 343

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
             S  +   +T      F+ + +          + K S       L+  L+E+ 
Sbjct: 344 LHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL 397


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 203/466 (43%), Gaps = 18/466 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60
           +++   + Q +Q  S  +   +  +  + +DSR I  A +  FFAIKG H+DGH F+  A
Sbjct: 1   MYSIQAIQQILQAKSPNLQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            Q G    VV      S    +     V++V+ AL +LA   R +    +I ITGS GKT
Sbjct: 61  YQAGVRSFVVTKVPELSQFPEAN-FLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE L   L           S+N+ IGVPL++  +    + GIFE G+S  GE+  L +
Sbjct: 120 TVKEWLFQLLYPHYAIIRSPRSFNSQIGVPLSVWGIQAQHELGIFEAGISRKGEMGNLAN 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++  I + T +  AH   FS   E    K  +F  ++    +    DD+          
Sbjct: 180 IIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLLFAEVD---LLIYRRDDATVHR---AIK 233

Query: 241 ALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            LG KT+ +S  +  NAD  + K +     + +E + Q     +      +   +N +  
Sbjct: 234 DLGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASIENAIHC 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             ++  L    +   + ++   P      R      +    +I+++YNA+ +S++  +  
Sbjct: 294 WAVLLHLGLKSEEIAERMAQLEPVA---MRMELLDGRNNCLIINDTYNADLSSLRLGLQW 350

Query: 360 LSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           + Q   H  GR R  VL ++ + G   +  +  +A+++  + +S V   G         L
Sbjct: 351 MRQ---HEHGRNRSLVLSEILQSGSSDEKLYRKVAQLIQEHQVSRVIGIGPATAVFATLL 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           PR IH  + ET + L   +       +V+++K +       +   L
Sbjct: 408 PREIHQLHFETTEALLEALPHLSFQSEVILIKGARQYHLETIAQAL 453


>gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
 gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
          Length = 464

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 208/472 (44%), Gaps = 27/472 (5%)

Query: 7   FHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILH 59
             D+L ++            Q  V+  S+DSR I  +      +FA KG   DG  F+ +
Sbjct: 6   IKDILDSLGDVKFVGYLSSMQRVVSFYSLDSREINDENSGASLYFAYKGDRVDGFSFVEY 65

Query: 60  AVQKGAGLVVVNTDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +  G    V + D             S+      +V+  L  LA     R+    IAIT
Sbjct: 66  LIDIGVKCFVCSKDYEHLCVEYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFKRIAIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEML   LS   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE
Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYVGE 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  L+ ++ P I ++T I+ AH+  F  +E IAS K+EI    + T  + LN    +   
Sbjct: 186 MNLLSEILEPEIVIVTNISYAHMQAFEDLEMIASEKSEIIT--KSTQMVILNESCPYHSR 243

Query: 235 LKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L+  + ++  +  I+ F  +     Q++ +   +++   +   +G   +      G H  
Sbjct: 244 LREIAKSISPEINIFYFDFNS---LQIKSFAFLNDKFSYDFTYKG--FDYSILLPGKHNI 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  + +  +L    +     L     ++GR +  R       + ++++SYN N  S 
Sbjct: 299 FNAISCINLALLLGMSENEIRNGLLNADFQKGRAELLRVK----DYLVLNDSYNGNLGSF 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            A   ++       +G++  +LG   E+G+ +   H      + L N   V+L G     
Sbjct: 355 MALKEMILDF--EIKGKKFIILGSFKELGKFAYEAHKTAMREVILMNFDKVFLIGEEFQE 412

Query: 414 LKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +K     S+ ++ Y    +       ++L  G  + +K S S    R+++ L
Sbjct: 413 VKRRENLSLNNLCYFSNFEDFIDCFVNNLESGCFIAIKGSRSNRLERVLDYL 464


>gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
 gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
          Length = 448

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 227/468 (48%), Gaps = 36/468 (7%)

Query: 6   TFHDLLQA---IQGHSIGIVPQGFVN-GISIDSRS-IAPQEAFFAIKGPHYDGHDFILHA 60
           +  D+++         I        N  IS DSR      + F AIKG  ++G+DF L  
Sbjct: 5   SLKDIIKIANETNSKCIFNYTDENKNLQISTDSREDFNENKLFLAIKGDKFNGNDFALDT 64

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG    +++ ++     +    V   +D +    KLA   R R    +++ITGS GKT
Sbjct: 65  YNKGCRFFILSENINMPKDAN---VVYTNDSVLFFIKLAREYRRRFNIKVVSITGSCGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE+  + L +  KT    G++NN IGVP T+  +    +  + E GM+H  E+  ++ 
Sbjct: 122 TTKELTALFLGTKYKTLKTEGNFNNEIGVPKTIFNLDDSYEMAVIEAGMNHKNELLRISE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     +I  + P H++    +E IA AK+E+F   ++     +N + +  ++L +++ 
Sbjct: 182 AIEADTVIINNVEPVHIAFLGSLENIALAKSELFNNAKEN--AIINKNTNKVDILLSEAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              IK I        AD  +++ K+ ++ S++      K++   H+ IG    QN+LM L
Sbjct: 240 NKKIKNII------EAD--IKEIKKINDNSFVY-----KNVTFNHNLIGDFNLQNILMAL 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   D++   KAL+ +  ++ R +  +        ++I++ YN+NP ++K  +  L
Sbjct: 287 KAAELYNIDLEECAKALTNYQNQKNRMQIIKI----NNCSIINDCYNSNPTALKNMLIYL 342

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALP 419
           S+     E R+IA++GDM E    + SFH ++   + SL NI+ V   G +   + + + 
Sbjct: 343 SK---REEKRKIAIIGDMLETETQNSSFHKEIGIFINSLKNINEVITVGDNSQKIDNEVT 399

Query: 420 RSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            S  +H+    E+++ +   I++S  +   +++K+S    F  +I  +
Sbjct: 400 CS-KMHFKKVEESINTIIDIIKNS-NEETAILIKASLGMRFNMIIEAI 445


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/478 (23%), Positives = 201/478 (42%), Gaps = 28/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  ++   +   +     G V +  ++ +  DSRS+    +  FFA+K    DG+ +I 
Sbjct: 1   MN--YSIEKVATLVGACRYGNV-ETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITG 115
               +G    VV  + +     +  P      V   + AL +LA   R      +I ITG
Sbjct: 58  ELYSRGVRNFVV--EAIPENWDMLYPQSNFLEVSKTIEALQRLATCHRAEFHVPVIGITG 115

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT  KE L   LS  K       SYN+ IGVPL++  +    + G+FE G+S  GE+
Sbjct: 116 SNGKTVVKEWLYQLLSPNKVVTRSPRSYNSQIGVPLSVWLLNEQTEVGVFEAGISERGEM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           + L  +++P I V T++  AH  NF+ +EE    K  +F     T  I    D+      
Sbjct: 176 KALREIIQPTIGVFTSLGEAHQENFASLEEKCMEKLCLF---RDTNAIVYPLDEELVVRC 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQ 294
             K+       +    K  NA   +++ K+    + +  V  QGK        I     +
Sbjct: 233 I-KTLNYKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFIDDASVE 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N + +  I   L  +V T  + +    P      R      Q   TLI++SYN++  S+ 
Sbjct: 292 NSITSAIICLHLGVEVKTLAERMPQLEPVA---MRLEVKEGQHGCTLINDSYNSDFNSLD 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  +++   H   +R  +L D+ + GE  ++ +  +A +     +      G  ++  
Sbjct: 349 IALDFMNRRPDHKGRKRTLILSDIFQSGEDEKTLYQRVAFLAEKRGVEKFIGIGEGLIRQ 408

Query: 415 KDALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + A  +    ++  T+        F  ++       V+++K +   GF +L  LL+ +
Sbjct: 409 RKAFNKFGKKYFFATVGSFISSEAFRELRDE-----VILLKGARQFGFDQLTELLVNK 461


>gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
 gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
          Length = 448

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 207/439 (47%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+ HA Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKHAAQAGAVAAVVSKDYCG--DSFGLELI 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +         + TI+ ITGS+GKTTTK      LSS+ K YA   SYN+ 
Sbjct: 84  IVNDPTEALKEAGENQSHLFQGTIVGITGSIGKTTTKVFANTFLSSVYKVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     + DF I E+G+S  G ++ L  +V P +AVIT +   H  NF   GI+
Sbjct: 144 LTVPLSLLMADGNEDFIILEMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQ 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKW 263
            IA  K  I   L+ +    L  D  ++     ++ +      +SF   ++ ADF  +  
Sbjct: 204 GIAEEKGRI---LQNSRVQLLPKDSPWYPHFIKQASSSEK---FSFAFHNETADFYYKAI 257

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++ S    + +      ++            N+L++L +  +L   VD  + +       
Sbjct: 258 RKDS----VIISTPEGDIDFAISFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLP 313

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +       +    +I+++YNA P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 314 PMRFE----QSMRNGIQVINDAYNACPEAMIAALDAIPH--PSESGKIILILGHMAELGN 367

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLV 442
            S+  H  +A+   L   S ++  G   L ++  L   S  V +  +  G+   ++  + 
Sbjct: 368 YSEEGHTIVAKKA-LSKASIIFFIGEKWLPIQHVLNYGSCEVSFHPSAQGIEEILKKVVQ 426

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GD+V++K S S     L+
Sbjct: 427 QGDIVLLKGSRSLALESLL 445


>gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/495 (24%), Positives = 199/495 (40%), Gaps = 45/495 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQ------------GFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           T  ++     G  +                   V  +  DSR       F AI G   DG
Sbjct: 5   TLREIAAMTGGVLLAPGGDEAGGSLQAHDGVTRVTDVVTDSRQAEEGSLFVAIVGERTDG 64

Query: 54  HDFILHAVQKGAGLVVVNTDMVASI-------GSLSIPVFGVDDVLGALNKLAVAARLRS 106
           H  +  A   GA   +V+                 S+P+  V D + AL  LA +   + 
Sbjct: 65  HRHVPQAAAAGARAALVSNVEAVRAAMAEAGRDPESLPLVIVPDTVAALGGLARSHLAQL 124

Query: 107 K---------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           +          ++IA+TGSVGKTTTK++    L++   T A + S+NN IG+PLT+ R  
Sbjct: 125 REQASSRGETLSVIAMTGSVGKTTTKDLTRQILAAQAPTVAPVASFNNEIGLPLTVLRAD 184

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + + E+G S  G I +LT +     A +  I  AH+  F  ++ +A AK+EI  GL
Sbjct: 185 HTTRYLVLEMGASGSGHIAYLTSIAPLDAAAVLMIGHAHMGGFGSVDGVARAKSEIVTGL 244

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSE-QSWMEV 274
             TG   LN DD     ++  +       + +F  S +  AD +    +   +  + +++
Sbjct: 245 LPTGVAVLNLDDPRSAAMRELAPG----RVLTFSASGDPRADLRASAVELDEQAHAVLDL 300

Query: 275 QLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            L G   E       G H   N L   G+      D    ++AL+    +       R  
Sbjct: 301 HLPGARPERLRLGLPGRHNVTNALAAAGLALAAGLDPSQVLQALAGAGLESPHRMDVREC 360

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   +ID+SYNAN  SM    ++ +  +  G+ RR+ ++ +M E+G  S + H    
Sbjct: 361 ---GGVLVIDDSYNANIDSM--TAALEALPALAGQRRRVVIISEMLELGSASHADHTRTG 415

Query: 394 EVLSLYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLFI---QSSLVDGDVVVV 449
           E+ +      +         A + A    +H             +    S L   D V++
Sbjct: 416 ELAAAAGAQVLVTIGQGAAPAAQAARAAGVHTIELPDAQAAIELLDGGHSPLRPADAVLI 475

Query: 450 KSSNSCGFYRLINLL 464
           K S+  G +R+ + L
Sbjct: 476 KGSHGSGAWRVADHL 490


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/462 (22%), Positives = 189/462 (40%), Gaps = 12/462 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   +  H  G      V  I  DSRS+       FFA++    DGH +I    +
Sbjct: 3   YTLERIASLVGAHLWG-SETVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYR 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +G    VV+                V   L AL +LA   R      ++ ITGS GKT  
Sbjct: 62  RGVRSFVVSRLPEDMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   LS  K       SYN+ IGVPL++  +    + G+FE G+S  GE+  L  ++
Sbjct: 122 KEWLYQLLSPEKNVTRSPRSYNSQIGVPLSVWNLDERSEVGLFEAGISEPGEMEALQSVI 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V T +  AH  NF+  E+    K ++F   +    +  + DD+       +S   
Sbjct: 182 QPTIGVFTCLGDAHQENFTSYEQKCLEKLKLF---KDAKVLVYDMDDARVVGCVNRSAFK 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G    +S  + ++    +   ++   ++ +    +GK        I      N +  L +
Sbjct: 239 GEYFAWSR-QRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +T    ++V  P      R      +   TLI++SYN++  S+  A+  +++
Sbjct: 298 CLHLGMSPETIAARMAVLEPVA---MRLEVKEGRSGCTLINDSYNSDYNSLDIALDFMNR 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                  +R  +L D+ + G   +  +  +A ++++  +      G  + A++      +
Sbjct: 355 RPDCAGRKRTLILSDIEQAGGAPEDLYGRVARLVAMRGVEKFIGVGPCLSAVQGLF--GM 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +  + D L       ++  +V+++K + S  F  L   L
Sbjct: 413 EACFYRSTDELLGSGVLDMLHDEVILIKGARSFRFDVLTEHL 454


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/483 (21%), Positives = 194/483 (40%), Gaps = 34/483 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRVGKH-KATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIPV----------------------FGVDDVLGALNKLAVAA 102
               V+  +    + +  + V                        V + L AL KLA   
Sbjct: 64  VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F   +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDV 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N D+       AKS     +  +S    +     + +  +  + + +  +       
Sbjct: 241 VIYNGDNELISNCVAKSMLTAREIAWSRTDIERP-LYISRVTKKEDHTVISYRYLEMDNT 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N L  L     L    D   + ++   P      R      +    LI
Sbjct: 300 FCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I+
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFNDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLL 464
             L
Sbjct: 476 EAL 478


>gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae TN]
 gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
 gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl
           -2,6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Mycobacterium leprae]
 gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae]
 gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 517

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/508 (24%), Positives = 204/508 (40%), Gaps = 50/508 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T   + + + G  + I P+      V G +  DSR++ P   F A+ G   DGHD    A
Sbjct: 5   TVARVTEIVGGALVDISPEEAAERRVTGSVEFDSRAVGPGGLFLALPGARSDGHDHAASA 64

Query: 61  VQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--- 106
           +             G   +VV  D     G L+  +    D  GA    A+A   ++   
Sbjct: 65  IAAGAVAVLAARPVGVPAIVVAPDPRTGDGGLTGVLEHDADGSGAAVLAALAKLAKAVAA 124

Query: 107 -----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  TII ITGS GKT+TK+++ + L  + +  A   S+NN +G P T+ R     D
Sbjct: 125 ELVAGGLTIIGITGSSGKTSTKDLVAVVLELLGEVVAPPESFNNELGHPWTVLRATRSTD 184

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+ + + ++G
Sbjct: 185 YLILEMSARRPGNIAALAAIAPPKIGVVLNVGTAHLGEFGSREAIARTKTELPQAIMQSG 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF----GKSKNADFQLRKWKQCS-EQSWMEVQL 276
            + LN DD     +   + A  I+         G   + D            +    +  
Sbjct: 245 VVILNVDDPAVAAMADATVARVIRVSRGSYSHPGSPNSPDVWTGPVSLDELARPRFTLHT 304

Query: 277 QG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +     + E+     G H   N L    +     A V+    AL+   P      R +  
Sbjct: 305 RDPRAGATEIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATGPVS--RHRMQVT 362

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGE 383
                 T+ID++YNANP SM+A +  L+ I                R  AVLG+M E+GE
Sbjct: 363 TRADGVTVIDDTYNANPDSMRAGLQALAWIAHGGTHDKNQPGSCARRSWAVLGEMAELGE 422

Query: 384 LSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFI 437
            S + H  +  +    ++S + +   G  + A+           +              +
Sbjct: 423 DSITEHDRIGRLAVRLDVSRLVVVGGGRSINAMHRGAVMEGSWGLETVNVADPAAALTLL 482

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           ++ +  GDVV++K+S+S G   L ++L+
Sbjct: 483 RAEVRPGDVVLIKASHSVGLGALADVLV 510


>gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
 gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
          Length = 451

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 197/448 (43%), Gaps = 31/448 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87
           + +DSR     E F A++G   DGH FI   + KG  L+V          S   P     
Sbjct: 20  VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79

Query: 88  -----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                 +  L +L  + + +  R + T+ AITGSVGKT+ K      L    K +A  G+
Sbjct: 80  LTPERCEYGLASLASVYLKSLERLRETV-AITGSVGKTSAKNDTKALLEGYFKIHAAAGN 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YN  IG  +T+   P D +  + E+G +H GEI  +T  + P IA +T +APAHL NF  
Sbjct: 139 YNTLIGCAVTVLAAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVTEVAPAHLENFGS 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E +  AK EIF   E      +N D+    +L  ++  L +  +  FG+     F   +
Sbjct: 199 LEGVLQAKTEIFAS-ENLRCAVINGDN---GMLCKRAEELRLPEVIRFGRRGEVLF--AR 252

Query: 263 WKQCSEQSWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                E+    V+     L G S  +     G H    +   + I   L         +L
Sbjct: 253 EHLSWEKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGRLGLSSREIAASL 312

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                  GRG+     L++    ++DE YNA+PA++KA+++ +        GRR  +LG+
Sbjct: 313 PKCRNSAGRGE---IRLSESGAAILDECYNASPAAVKASLAAMDSAD--IPGRRFLILGE 367

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S S H  + E     +   ++L G     +          +Y +++D L   +
Sbjct: 368 MLELGTASVSEHGKIFERALRVS-DLLYLFGEEWKNV-----DGTADYYYDSIDALIEAV 421

Query: 438 QSS-LVDGDVVVVKSSNSCGFYRLINLL 464
             +   +GDV++VK S      R++  L
Sbjct: 422 DGTRPGEGDVILVKGSRGNHLERVVRAL 449


>gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
 gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
          Length = 430

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 112/401 (27%), Positives = 177/401 (44%), Gaps = 32/401 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L  F  L  A+ G  I         N ++ DSR++ P   F  ++G   DGH +I  A+Q
Sbjct: 2   LLGFEALCTAVAGTFICNYSHYAGFNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQ 61

Query: 63  KGAGLVVVNTDM-VASIGSLSIPV---------FGVDDVLGALNKLAVAARLRSKATI-I 111
           +GA  V+ +         +  I V           V+  L AL   A A   R    + I
Sbjct: 62  QGADCVLADAAHLDIQENAQHILVLCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            +TGS GKTTTKE+L    +   +T    G+ N+  G+PL++  +  + + GIFELGM+ 
Sbjct: 122 GVTGSNGKTTTKELLASIFAQKYRTVKNEGNLNSETGLPLSVFTITKEHEVGIFELGMNR 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GEI  L  +++P+IAVIT I  AH+      + IA  K  IF   ++T   F+   D +
Sbjct: 182 KGEIAELAAVLKPNIAVITNIGTAHIGMLGSKDAIAQEKKHIFSCFDETSVGFVPAQDKY 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E L+   H      I ++    +A + L         S  E++ +G+++       G H
Sbjct: 242 AEFLQDVPHG----KIVTYSADPDA-YTLEGL------SGAEIRYKGETI--HLPLPGKH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + +       + +    +       GR +  R     G  T + + YNANP 
Sbjct: 289 NVHNAFAAIAVAEYCKIPLQSIKAGIEQMQALFGRSQIIR-----GPVTYLLDCYNANPD 343

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           SM A +++ + I     G++I VL  M E+G  S   H  +
Sbjct: 344 SMNAGLALCANIRVS--GKKIYVLASMKELGFESHEAHKAV 382


>gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
 gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
          Length = 1024

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 209/468 (44%), Gaps = 17/468 (3%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGF-VNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            W    + +   G  I   P  +  +GI   +S    P +   A++    +G      + +
Sbjct: 565  WDAEQIARVTGGIWIKSPPDSWRPSGICVWES-GFRPNDI-VALRSESENG-GLSADSFK 621

Query: 63   K-----GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            +      A ++   T +  ++ + +  V  V  +  A+  +   AR      ++ +TGS 
Sbjct: 622  RLSPLPNAVMITSGTQVPHTLPTTAG-VLVVKSIHQAVIFMGRHARRLFTGKLVGVTGSA 680

Query: 118  GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            GKTTT  ML  A +      A  G+ N   GV   LA M    D+ I E+ +   G ++ 
Sbjct: 681  GKTTTVAMLKHAFNDSGHISATRGNANLPYGVAWNLASMESGTDYMILEIAI---GRMKE 737

Query: 178  LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               L RPH+AV+T I  AHL     IE IA  KA IF GL   G   +N D   F+L+  
Sbjct: 738  SAVLARPHVAVVTNIGSAHLEFHKTIETIAKRKARIFWGLVDGGIAVINRDTECFDLILH 797

Query: 238  KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +++ +    + ++G+   +  +L       ++  +E+Q++G+        +  H   NML
Sbjct: 798  EANKVKA-VVITYGEHSESAVRLININDKDKE--VEIQVEGRIYIFGSKVLSKHHISNML 854

Query: 298  MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             T  +   L   +D  +K L  F P  GRG+ +   ++     +IDESYNANP SM+AAI
Sbjct: 855  CTAAVAIALDLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNANPLSMQAAI 914

Query: 358  SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                  + +   + I VLGDM ++G+ ++  H+ L   +    I  V L G  +  LK  
Sbjct: 915  QGARTTARNRSSKLILVLGDMLQLGDQTEKLHLSLLPEILSPEIRLVVLVGEQMALLKGH 974

Query: 418  LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +     V   ++++     +   +   DVV+ K SNS     L++ L 
Sbjct: 975  ITDHAEVIAVDSVEDALEPLIFGIRANDVVMAKGSNSINLNYLVDQLR 1022


>gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
 gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
          Length = 456

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 216/450 (48%), Gaps = 26/450 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIP 84
           +GI  D+R + P   F +++G H+DG+ F   A+++G    +V+            L   
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77

Query: 85  VFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           +    D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G+Y
Sbjct: 78  LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F   
Sbjct: 138 NNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFGTP 197

Query: 204 EEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
           E +  AK+E++  L +  G  F N +D         S+  G+ T+Y  G S     ++  
Sbjct: 198 EGVVKAKSELYAYLREHDGQAFCNGEDKTL-----ISNLNGLPTVYYNGTSSP---RITG 249

Query: 262 KWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 E   ++++ +    G+S ++    +G +   N+L  + +      D  T  +A+
Sbjct: 250 SVLPTDETGLLKIEWRDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAV 309

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + + P   R +            +I + YNANP+SM+ A++    +       R+ +LGD
Sbjct: 310 TNYQPHNERSQV--LPPTAQGNRVILDCYNANPSSMEVALNSYFTMD-SQGLNRMLILGD 366

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           M E+G+ ++S HI +   +  Y + +     +  G +  AL+     + H  +  +   L
Sbjct: 367 MNELGDAAESEHITVIRQIRSYLLRYPKMVTYFCGPNFFALQGHY-GNEHFIFFPSATAL 425

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +          +++K SNS     +  L
Sbjct: 426 KQYFTRHQPQHSFILIKGSNSHHLSSIAEL 455


>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum MopnTet14]
          Length = 450

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 195/439 (44%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV  D      S  + +F
Sbjct: 25  VTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGP--SYGLQLF 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   +L +         +  +I ITGSVGKTTTK      LSS  K +A   SYN+ 
Sbjct: 83  HVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKVFASPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S  G ++ L  ++ P I VIT I   H  NF   G +
Sbjct: 143 LTLPLSILMADGDEDFLLLEMGVSEPGNMKNLLEVIEPTIGVITHIDVQHAMNFLDKGAK 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKW 263
            I   K+ +   LE+ G   L  D S+F     K+        +SF   ++ +DF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLLPKDSSWFPFFMKKNSTAEQ---FSFSMNNETSDFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N L+ + +  +    +D   +        
Sbjct: 257 HSDG----VLISAPDGDIELPVVFPYSPAYMNFLVAVALAWLTNVPMDRLEQVSPSLILP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P SM AA+  +    P   G+R+ +LG M E+G+
Sbjct: 313 SMRFEQQEY----NGIRVINDAYNASPDSMLAALDAVPV--PPEGGKRVFILGHMAELGK 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S   H+ +A          V   G     ++D +   +  + +  +++ +   ++S + 
Sbjct: 367 YSNECHVAVARKAVT-KAHVVVFIGEKWFPVRDVVRDANCQIEFYGSVNEIMHVVKSLVR 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 34/483 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRVGKH-KATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIPV----------------------FGVDDVLGALNKLAVAA 102
               V+  +    + +  + V                        V + L AL KLA   
Sbjct: 64  VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F   +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDV 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N D+       AKS     +  +S    +     + +  +  + + +  +       
Sbjct: 241 VIYNGDNELISNCVAKSMLTAREIAWSRTDIERP-LYISRVTKKEDHTVISYRYLEMDNT 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N L  L     L    D   + ++   P      R      +    LI
Sbjct: 300 FCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    ++
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGVN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLL 464
             L
Sbjct: 476 EAL 478


>gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
          Length = 467

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 195/470 (41%), Gaps = 21/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  H++     G + G       + +  DSR + P   F A+ G   DGH F+  AV  G
Sbjct: 6   FRTHEVAALFGGGAEGPDRPFPFS-VCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGG 64

Query: 65  AGLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  V+              GS  +    VD V  AL  LA   R R    +  ITGSVGK
Sbjct: 65  ASAVLALRGPGREARASLPGSADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT++++   L+S++ ++    SYN  IG   T+  MP D    + E G +H GEI  L 
Sbjct: 125 TTTRDLILRVLASVEPSHGAPKSYNTRIGCASTVLGMPPDTRNLVLEYGTNHPGEISALV 184

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P    +T + PAHL     ++ + +AK E+ E  +       N+D++      A  
Sbjct: 185 ASFPPQELFLTEVCPAHLEGLGDVQGVLAAKLELLESRQAERVT-YNFDNALLRD--ALH 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQN 295
            +   +     G S   + ++ + +    S+   +++ L+  G+S        G   A  
Sbjct: 242 ASFSAERSLGVGVS-GGEVRIERAEPRWTSKGPVLDLHLREAGRSWSFASRLWGRQHAYA 300

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                 +        +   +      P  GRG   R   ++    ++DE+YNANPASM  
Sbjct: 301 WAFAWSVALRRGVGEEALREVAETSLPLPGRG---RVLSDREGLWILDETYNANPASMGV 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  L  +S  G G   A+LG M E+GE S  +H ++   L    +    L G     L+
Sbjct: 358 ALENLHLLSSQGAGVSWAILGGMRELGETSPHWHREILGKL--RGVDGAVLVGEEWAPLR 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             LP    V +      L       L    ++++K S S G  RL+ L  
Sbjct: 416 SDLPD--QVRWVPDTAVLLEEGGPVLPKHALLLLKGSRSYGLERLLPLFR 463


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 34/483 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRVGKH-KATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIPV----------------------FGVDDVLGALNKLAVAA 102
               V+  +    + +  + V                        V + L AL KLA   
Sbjct: 64  VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F   +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDV 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N D+       AKS     +  +S    +     + +  +  + + +  +       
Sbjct: 241 VIYNGDNELISNCVAKSMLTAREIAWSRTDIERP-LYISRVTKKEDHTVISYRYLEMDNT 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N L  L     L    D   + ++   P      R      +    LI
Sbjct: 300 FCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    ++
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGVN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLL 464
             L
Sbjct: 476 EAL 478


>gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 475

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 185/469 (39%), Gaps = 22/469 (4%)

Query: 3   PLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            + T       +Q       +       V  +  D+R++   + F A++GP +D H F+ 
Sbjct: 18  AMMTLQQAFALLQPRIPAARLVGAGATPVARVHTDTRTVQAGDLFVALRGPRFDAHAFLA 77

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A                 +    +P   V D L AL  LA   R +    +IA+TGS G
Sbjct: 78  QAR----AGGAAAALAQGGLADAGLPGIEVPDSLAALALLAAGWRAQFDLPLIAVTGSNG 133

Query: 119 KTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTT  +M+   L +       A  G++NN IG+PLTL R+       + ELGM+H GEI 
Sbjct: 134 KTTVTQMVAAILRAWQGDAALATQGNFNNAIGLPLTLLRLRARHTVAVVELGMNHPGEIA 193

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  + +P +A++      HL     +  +A     +F  L   G      DD +  L +
Sbjct: 194 ALAGIAQPGVALVNNAQREHLEFMHSVAAVARENGSVFASLPAHGVAVFPADDDYQALWQ 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +         + G    AD +            + +      +    H  G H   N 
Sbjct: 254 ELAAGRECLRFGAGGAVDGADARWVD-----GAWALTLATPQGPVTTRLHIAGRHNVGNA 308

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L          A +    + LS F P  GR + +         +++D+SYNANP S++AA
Sbjct: 309 LAAAACALAAGAPLAALAQGLSGFSPVPGRSRSFSIRHAGRQISVVDDSYNANPDSVRAA 368

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I++L+++       R+ VLGDM E+G  +   H           I  ++           
Sbjct: 369 IALLAELPAP----RLLVLGDMAEVGAQAAQLHAQAGAQAHAAGIHRLFA---LGAQSAH 421

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           A        + +++D L   ++ +L D   V+VK S S    +++  + 
Sbjct: 422 AASAFAGAQHFDSIDSLCAAVRQALPDVGSVLVKGSRSMRMEQVLKEIQ 470


>gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
 gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
          Length = 428

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 199/459 (43%), Gaps = 44/459 (9%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +A  G    G  P   V  +  DSR   P   F A+ G    G +++  A  KG
Sbjct: 10  TPEWVARATGGRLHPGGKP---VRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +    A+          V D   AL +L  A R      ++A+ GS GKTTTKE
Sbjct: 67  AHLVLSDRPGPAT--------VEVVDTHQALLRLGRALRELFPGQVVAVGGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L       A  G+ N    +   L R+       + ELG+  +GE+  L  L RP
Sbjct: 119 ALAQGLGF----PAPPGNQNTAPPLARFLLRLDPQAPGCVVELGVDRVGEMAELMGLARP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+AV+T +   HL  F  +E +   +A +         + L       E+L+      G+
Sbjct: 175 HLAVLTALGEEHLEAFGSLEGVVEEEAGLLSA--PQALVSLQA----AEVLERFGLGRGL 228

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T Y FG+   A F+    +    +S         ++EV     G   A   L  LG+  
Sbjct: 229 PT-YGFGE---ATFRGENLRLLLHESRFRY----GALEVHIPYPGMGPALAALAALGVAE 280

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  +     + L+      GR +R      +     ++++YNANP S+KA ++ L+   
Sbjct: 281 MLGLNPKEVAERLAHLVLPPGRMERRE----KDGVVFLNDAYNANPLSVKAGLAWLA--- 333

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+  VLG+M E+GE +   H+++A+  +   +  ++L G +  A       S+  
Sbjct: 334 -LQPGRKWVVLGEMRELGEEALRLHLEVAQEAARLGLKPLYL-GPYAKAQA-----SLGG 386

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             +E ++    +++  +  GD+V +K+S S G  R++ L
Sbjct: 387 EAAEGLEEAVGWLKERVQPGDLVYLKASRSVGLERILEL 425


>gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
 gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
          Length = 447

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 203/441 (46%), Gaps = 22/441 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G +IDS+ + P + FFA+ G   DGH F+ HA   GA   VV+ D      S  +
Sbjct: 23  DKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQG--DSFGL 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  VDD   AL +         + T++ ITGSVGKTTTKE     LSSI KT+A   SY
Sbjct: 81  ELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSY 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH-LSNFSG 202
           N+ + VPL+L     D D  I E+G+S  G ++ L  +V+P IAVIT I   H +    G
Sbjct: 141 NSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQG 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
           I+EI   K+ I   L+K+    L  D  ++  L++ S        +SF  +   ADF  +
Sbjct: 201 IQEILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPTAEK---FSFSFNDPLADFCYK 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                     + +Q   ++  +           N+L+ + +  IL    +  I++L    
Sbjct: 255 AIS----GDSVVIQTPEENYCLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELK 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +       +    +I+++YNA P +M AA+  L    P   G+ I +LG M E+
Sbjct: 311 LPPMRFEH----SMRNGMQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAEL 364

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G  S+  H  +AE  +      ++  G   + ++  L   S  V +  +   +   ++  
Sbjct: 365 GRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV 423

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
              GDV+++K S +     L+
Sbjct: 424 ARYGDVILLKGSRALALESLL 444


>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum Nigg]
          Length = 450

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 191/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D         + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRGP--DYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LS   K +A   SYN+ 
Sbjct: 83  HVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  NF   G +
Sbjct: 143 LTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKW 263
            IA  K+ +   LE+ G   L  D S+F     K+ A      +SF   ++ ADF  R  
Sbjct: 203 GIAEEKSLL---LERCGIHLLPRDSSWFNFFMKKNAAADQ---FSFSMNNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  +    +D   +A       
Sbjct: 257 HSEG----VLISAPDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ + +LG M E+G 
Sbjct: 313 SMRFEQQE----HNGIRIINDAYNASPDAMLAALDAVP--IPSEGGKTVFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S   HI +A          V+  G     +++ +   +  + +  ++  +   ++S + 
Sbjct: 367 YSDECHIAVARKAVT-KAHVVFFVGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVR 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 RGDVVLLKGSRSLELETLL 444


>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 417

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/396 (31%), Positives = 185/396 (46%), Gaps = 27/396 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +   GI   G        DSR +     F AI G   DGHDF
Sbjct: 7   MMPM-GLAEIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 65

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TII 111
           +     +GA   +V+      +    +P   VDD + AL +LA     R +A     T+I
Sbjct: 66  VSKVGAQGAVAALVD----HEVADAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 122 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 182 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 241

Query: 232 FELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCS-EQSWMEVQ-LQGKSMEVVH 285
              +   +       +  FG    ++ +        +    +    E++  +G+  +V  
Sbjct: 242 VAAMSGIAPG----EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNL 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
              G H   N L    +   L   +D     L+                  +  FTLID+
Sbjct: 298 GICGMHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDD 357

Query: 345 SYNANPASMKAAISVLSQISPHGEGR--RIAVLGDM 378
           S+NANP SMKA +  L +   + E +  RIAVLG M
Sbjct: 358 SFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAM 393


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 188/467 (40%), Gaps = 12/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   +   +     G   +G V+ +  DSRS+    +  FFA++    DGH++I     
Sbjct: 26  YSIEKIASLLGVEIYGGR-EGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYA 84

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV                  V     AL +LA   R      I+ +TGS GKT 
Sbjct: 85  RGVRFFVVEELPCEWEKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTV 144

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS  K+      SYN+ IGVPL++  +      GIFE G+S  GE+  L ++
Sbjct: 145 VKEWLYQLLSFSKRVTRSPRSYNSQIGVPLSVWLLNEQTQVGIFEAGISKKGEMEVLRNI 204

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P I V+T++  AH  NF  +EE    K  +F  ++    +   YDD            
Sbjct: 205 IKPTIGVLTSLGDAHQENFVSMEEKCREKLRLFTDVD---VLVYPYDDKLIRSCVDTLSF 261

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTL 300
            G    +S  K  +    ++  K+    + +    + +  +      I      + +  L
Sbjct: 262 KGKGLGWSV-KDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYTIPFIDDASIYDSITCL 320

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    +     + +  P      R      Q   TLI++SYN++  S+  A+  +
Sbjct: 321 ALCLYLGVKKEVLKARMPLLEPVA---MRLEVKEGQRGCTLINDSYNSDINSLDIALDFM 377

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++   H   +R  VL D+ +  E  ++ +  +A +     +      G  ++  + A   
Sbjct: 378 NRRPDHKGRKRTLVLSDILQSAEDDEALYRRVASLAEKRGVEKFIGIGETLICQRKAFNN 437

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +  T+ G         +  +V+++K +   GF +L  +L+ +
Sbjct: 438 IKEKCFFTTVGGFLSSDAFRQMHDEVILLKGARCFGFEQLTEMLVNK 484


>gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 458

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 221/452 (48%), Gaps = 28/452 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLS 82
           +GI  D+R + P   F +++G H+DG+ F + A+++G    +V+      ++  S   L 
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 83  IPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             +    D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F 
Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFG 197

Query: 202 GIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             E +  AK+E++  L + +G  F N +D         S+  G+ T+Y  G +     ++
Sbjct: 198 TPEGVIKAKSELYAYLREHSGQAFCNGEDKTL-----ISNLNGLPTVYYNGTTSP---RV 249

Query: 261 R-KWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                   E   ++++      G+S ++    +G +   N+L  + +      D  T  +
Sbjct: 250 TGAVLPTDESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINE 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A++ + P+  R +            +I + YNANP+SM+ A+S    +       R+ +L
Sbjct: 310 AVTNYQPRNERSQV--LPPTAQGNRVILDCYNANPSSMEVALSSYFTMDCQ-GLNRMLIL 366

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMD 431
           GDM E+G+ ++S HI +   +  Y + +     +  G +  AL  A   S H  +  +  
Sbjct: 367 GDMNELGDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFAL-QARYGSEHFIFFPSAT 425

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            L  +          +++K SNS     +  L
Sbjct: 426 ALKQYFTRHQPQHSFILIKGSNSHHLSSIAEL 457


>gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 447

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 205/441 (46%), Gaps = 22/441 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G +IDS+ + P + FFA+ G   DGH F+ HA   GA   VV+ D      S  +
Sbjct: 23  DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQG--DSFGL 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  VDD   AL +         + T++ ITGSVGKTTTKE     LSSI KT+A   SY
Sbjct: 81  ELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSY 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH-LSNFSG 202
           N+ + VPL+L     D D  I E+G+S  G ++ L  +V+P IAVIT I   H +    G
Sbjct: 141 NSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQG 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
           I+EI   K+ I   L+K+    L  D  ++  L++ S        +SF  +   ADF  +
Sbjct: 201 IQEILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPTAEK---FSFSFNDPLADFCYK 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              + S    + +Q   ++  +           N+L+ + +  IL    +  I++L    
Sbjct: 255 AISRDS----VVIQTPEENYCLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELK 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +       +    +I+++YNA P +M AA+  L    P   G+ I +LG M E+
Sbjct: 311 LPPMRFEH----SMRNGMQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAEL 364

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G  S+  H  +AE  +      ++  G   + ++  L   S  V +  +   +   ++  
Sbjct: 365 GRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV 423

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
              GDV+++K S +     L+
Sbjct: 424 ARYGDVILLKGSRALALESLL 444


>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
 gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
          Length = 452

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 191/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D         + + 
Sbjct: 27  VTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRGP--DYGLQLL 84

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LS   K +A   SYN+ 
Sbjct: 85  HVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPKSYNSQ 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  NF   G +
Sbjct: 145 LTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQ 204

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKW 263
            IA  K+ +   LE+ G   L  D S+F     K+ A      +SF   ++ ADF  R  
Sbjct: 205 GIAEEKSLL---LERCGIHLLPRDSSWFNFFMKKNAAADQ---FSFSMNNETADFYYRAI 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  +    +D   +A       
Sbjct: 259 HSEG----VLISAPDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLP 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ + +LG M E+G 
Sbjct: 315 SMRFEQQE----HNGIRIINDAYNASPDAMLAALDAVP--IPSEGGKTVFILGHMAELGR 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S   HI +A          V+  G     +++ +   +  + +  ++  +   ++S + 
Sbjct: 369 YSDECHIAVARKAVT-KAHVVFFVGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVR 427

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 428 RGDVVLLKGSRSLELETLL 446


>gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029]
 gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
 gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029]
 gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
          Length = 447

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 203/441 (46%), Gaps = 22/441 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G +IDS+ + P + FFA+ G   DGH F+ HA   GA   VV+ D      S  +
Sbjct: 23  DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQG--DSFGL 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  VDD   AL +         + T++ ITGSVGKTTTKE     LSSI KT+A   SY
Sbjct: 81  ELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSY 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH-LSNFSG 202
           N+ + VPL+L     D D  I E+G+S  G ++ L  +V+P IAVIT I   H +    G
Sbjct: 141 NSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQG 200

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261
           I+EI   K+ I   L+K+    L  D  ++  L++ S        +SF  +   ADF  +
Sbjct: 201 IQEILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPTAEK---FSFSFNDPLADFCYK 254

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                     + +Q   ++  +           N+L+ + +  IL    +  I++L    
Sbjct: 255 AIS----GDSVVIQTPEENYCLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELK 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +       +    +I+++YNA P +M AA+  L    P   G+ I +LG M E+
Sbjct: 311 LPPMRFEH----SMRNGMQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAEL 364

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G  S+  H  +AE  +      ++  G   + ++  L   S  V +  +   +   ++  
Sbjct: 365 GRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV 423

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
              GDV+++K S +     L+
Sbjct: 424 ARYGDVILLKGSRALALESLL 444


>gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 458

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 220/452 (48%), Gaps = 28/452 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLS 82
           +GI  D+R + P   F +++G H+DG+ F + A+++G    +V+      ++  S   L 
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 83  IPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             +    D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F 
Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFG 197

Query: 202 GIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             E +  AK+E++  L + +G  F N +D         S+  G+ T+Y  G +     ++
Sbjct: 198 TPEGVIKAKSELYAYLREHSGQAFCNGEDKTL-----ISNLNGLPTVYYNGTTSP---RV 249

Query: 261 R-KWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                   E   ++++      G+S ++    +G +   N+L  + +      D  T  +
Sbjct: 250 TGAVLPTDESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINE 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A++ + P   R +            +I + YNANP+SM+ A+S    +       R+ +L
Sbjct: 310 AVTNYQPHNERSQV--LPPTAQGNRVILDCYNANPSSMEVALSSYFTMDCQ-GLNRMLIL 366

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMD 431
           GDM E+G+ ++S HI +   +  Y + +     +  G +  AL  A   S H  +  +  
Sbjct: 367 GDMNELGDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFAL-QARYGSEHFIFFPSAT 425

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            L  +          +++K SNS     +  L
Sbjct: 426 ALKQYFTRHQPQHSFILIKGSNSHHLSSIAEL 457


>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 490

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 118/474 (24%), Positives = 212/474 (44%), Gaps = 21/474 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  +L +A  G  +   P     G+S DSR+IAP  AF A+ G  +DGH F+  A Q+G
Sbjct: 12  FSLDELARATGGRVLRSGPDA--RGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQRG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGS 116
           A   +V+ ++    G  ++    V+D L AL  LA A R R +A         I+AI GS
Sbjct: 70  AAAFIVSREVALPPGGGAV---LVNDGLTALGALARAHRERWRAGAHPGGPRAIVAIGGS 126

Query: 117 VGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT   +   L+++ +   +A  G+ NN IG+P+TL  +     F + E+G +  GE
Sbjct: 127 AGKTTTTRTIAALLAAVGRGEVHATAGNLNNAIGLPMTLLGLEDRHRFAVVEIGTNQRGE 186

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  L  +  P +AV+T+I   H      +E++A+ + ++   L   G    N DD     
Sbjct: 187 VAALARIAGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAALPAEGVALGNGDDV---K 243

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHH-GIGYHM 292
           +  +    G     ++G  + A  ++   +      + + ++  G+++E+V         
Sbjct: 244 VVEQLERAGAARRITYGFGERARIRIAGRRPVGVRGTSVRIERGGEALELVVPLLGEAGA 303

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                    +   +   + T   A +          R           +ID+SYNANP S
Sbjct: 304 LAAAAAVAVVEEAVGEPLSTERAARAAAGLAPPGDGRLSVRELPDGTVVIDDSYNANPLS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHV 411
           M++++    +++     R + +LG+M E+G L+ + H  L E + +    + V + G   
Sbjct: 364 MRSSLRTAVEVAEALGKRLVLLLGEMRELGALAAAEHDALGEQVGAARPAALVAVGGEAA 423

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + A    +   ++   D      Q  +  GD+V+VK S      R++  L+
Sbjct: 424 RIARAAEAAGVRAWFAGDADAAAARAQEIVERGDLVLVKGSRGIRMERIVEALV 477


>gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 474

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/466 (26%), Positives = 207/466 (44%), Gaps = 29/466 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WTF  +  A+     G      + GIS D+R IA  + F A++G  +D HDF+  A   G
Sbjct: 26  WTFERVAAALG---TGPSMPQPLAGISTDTRRIARGDVFVALRGDRFDAHDFLATAKDAG 82

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   VV+         L +P + V D L AL +LA   R      +IA+ GS GKT+TKE
Sbjct: 83  AAAFVVS--DATRAVGLGVPTYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTKE 140

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L  ALS   + +A  G+ NN IGVPLTL  +P   D  + ELG +  GE+  L  +  P
Sbjct: 141 LLKAALSGTFEVHATTGNLNNLIGVPLTLLAIPPHADIAVVELGTNAPGEVATLRAMSAP 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T+I   HL     +  +   + ++F G+       +         + ++      
Sbjct: 201 DVAVLTSIGEEHLEGLGDLAGVLREECDVFPGVR---LAIIPVAHPEVSPMASERAEA-- 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             + + G + +AD    +W    E   W +V      +       G H A N ++ +   
Sbjct: 256 --VVTAGLT-DADVAPEQWGLDDEGRPWFDVD----GVHFTLPLRGAHQAANAMLAVAAA 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +++A   ++       RG         G  T+I+++YNANP SM+AA+++L ++
Sbjct: 309 RACGVPLESAAAGMAAMPVPNMRGVWETI----GQTTVINDAYNANPPSMRAALALLDRV 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                 +R+A LG M E+G  +   H D+A    + +   +   G    A +   P +I 
Sbjct: 365 GE--GRQRVAFLGTMRELGAQADVQHDDIARAALVSSADVIVGVGAFGDAFRRVAPDAIN 422

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                V  ++  +  +      +    V+++K+S      RL+  L
Sbjct: 423 AASGRVIVADEPESAWTAAAPRVNRNAVILLKASRGVRLERLLPQL 468


>gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
 gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
          Length = 455

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/469 (24%), Positives = 215/469 (45%), Gaps = 20/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  F++L QA+ G ++              D+R       FFA +G ++DGH+++  AV+
Sbjct: 1   MLDFNELCQALNGEALVRDANYDDYRAFESDTRKDLTDTVFFAFEGDNFDGHNYLDLAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTT 121
           KGA ++VV  ++   +   S+ +  VDD + A  +L      + K A    ITGS GKT+
Sbjct: 61  KGARVLVVAKEVEL-LTLDSVAMIKVDDTVKAWQRLGHFLLQKQKSARRFGITGSSGKTS 119

Query: 122 TKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  +L+  L  I+     +  G+ NNHIGV   + R+  D  F   E+G +H GEI  L 
Sbjct: 120 TNAILSQLLEFIRPKQVLSTHGNTNNHIGVTQNIVRLKGDESFFSLEVGTNHPGEIADLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V PH A++T++  +H+ NFSGI+ I   K +IF  + + G   +    +  + ++   
Sbjct: 180 KIVVPHAAILTSVGASHIGNFSGIDAIFDEKIDIFRYMARDGVAIVPA--ALVKRIEDAL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLM 298
                 T  SFGK K AD +L  ++   E+S   V+L+ G+S+ +     G H   N+  
Sbjct: 238 PERKDITYISFGKEKYADVRLGSYELGLEKSTFLVKLKSGESLSLESILSGEHQLLNICA 297

Query: 299 TLGIVSILTADVD-TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            + ++     +   T     S        G R +    +   T + + YNANP S  A +
Sbjct: 298 CVALLENYQEEYSFTISDLKSALSSVALPGMRMKTEKVED-QTFVLDCYNANPQSTSAFL 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +  +   G    + VLGDM E+G++++ +H ++ +         +   G     +   
Sbjct: 357 DWVKSVYKSG----VLVLGDMLELGDMAKKYHQEILDKAKAMQGFDLVTVGECFKEVNQE 412

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   + ++++    F++ ++   + +  K S      ++ + L +
Sbjct: 413 GK-----AFLDSLEA-GAFLKENIKVNETLFFKGSRGIQLEKIYHKLRD 455


>gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
 gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
          Length = 477

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 200/452 (44%), Gaps = 30/452 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSL 81
           F+  ++IDSRS      F A+ G   DGH +I  A+ +GA  V+++          +   
Sbjct: 34  FIRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRT 93

Query: 82  SIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                   + L AL ++A     L +  T I ITGS GKTTTKEML   LS    T    
Sbjct: 94  GTWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQEFPTVKTP 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YN+ +G+PL+L ++     +G+FE+G+ H+GE+  +  ++ P+ AV+T I  +H    
Sbjct: 154 GNYNSTLGLPLSLMQIGDHHKYGVFEMGIDHIGEMDTMLGMLAPNHAVLTNIGISHAEKL 213

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HALGIKTIY-SFGKSKNADF 258
             I  I + K ++ +        F+  D+   + ++  + H  G   I+ + G +   D 
Sbjct: 214 GSISAIMTEKGKLLKNARNGY--FMGMDEPSRKAMEHIAGHPQGFWGIHATEGVTGIRDE 271

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            L  W    + + + V             IG H  ++ L  + +   L    +     L 
Sbjct: 272 GLLGWTIIYQGTEIHV-----------PAIGKHSLKDALAAISVARHLGVGEEFIKHGLE 320

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                EGR +        G  T+I++ YNA  +S  + +  ++  S   +G +  VLGDM
Sbjct: 321 KVENLEGRSRVV-----SGDVTVIEDYYNAAASSTTSILDFMAATS--WKGDKKVVLGDM 373

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFL 435
            E+G  S   H  +   L L + S V+L G       + L    +     YS+    +  
Sbjct: 374 KELGRYSDRAHEMIGRRLLLASPSSVFLYGTDTKKTWNILRSGGYAGQLVYSDDEHEVNR 433

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++ ++  GD+V+VK S      + + ++  +
Sbjct: 434 ALERNIHRGDLVLVKGSRGMAMEKFLPVITAK 465


>gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 455

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/470 (22%), Positives = 191/470 (40%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++L  I+G  I    +  ++  +I    +     +F ++    D + F    
Sbjct: 1   MKNL-NLKEMLSIIEGKIIRGTDELLIDHAAIVPHKLKDNSLYFNMQDDPVDFNSF---- 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             K   +V+ +          +  V  V+DV  A  +     R      ++A+TG+ GKT
Sbjct: 56  --KNCAMVINSEHYNVENSKWT--VVAVEDVEKAFWRFVKYYRNLFNIPVVAVTGTCGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   LS   KT A   S N        L  +    +  +FE  +++  ++     
Sbjct: 112 TTKEMIKHILSLHFKTAATYKSINGWRMHLPYLLEIDETTEAAVFETAVAYPEDLIESCR 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P I +IT I   HLS  S  +   +AKAE+ EGL   GT+ LN DD     +  + +
Sbjct: 172 YFKPDIGIITNIGVDHLSGCSTFDNYLNAKAEMMEGLGYRGTLILNADDKNISRIDLQPY 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  FG SK + F+  +     +     ++ +    ++   G G H   N L  +
Sbjct: 232 K---GRIIYFGLSKKSHFRASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L   +  A   L+ +   E   +  +        T+ID+++++NP SM+AA+  L
Sbjct: 289 ACTHVLGLGIKEAALRLASYKHLE---RHLQVVPGVNGSTIIDDTWSSNPTSMQAALKTL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
             +S +   R+ A+LGDM  +    +  H ++  +     +  +   G     +      
Sbjct: 346 QNLSGNK--RKAAILGDMFYLYSWEKELHREIGNLAVEIGLDILLTVGDAASEIARGALE 403

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               S ++      D  +  I   L D  +V+VK S    F  L+N ++ 
Sbjct: 404 KGMNSENIFICADADEAYQVICPLLDDNTIVLVKKSMKVSFNNLVNKIMN 453


>gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA2]
 gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL044PA1]
 gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA3]
 gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp.
           P08]
          Length = 485

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 118/480 (24%), Positives = 190/480 (39%), Gaps = 38/480 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L Q ++   +    Q   + + ID+R + P   + A+ G   DGHDF   A   GA 
Sbjct: 6   IATLAQWVEAAPVDDSAQVGPD-VVIDTRKVTPGALYIALPGARVDGHDFTQAAQDAGAA 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTK 123
            V+             +P   VDD    L++LA       +      IA+TGS GKT+TK
Sbjct: 65  AVLTTRST-----DAQVPHLIVDDGRAGLSRLARHVVATERERGMLTIALTGSSGKTSTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   L +   T A +GS+NN IG PLT  R   D  F + E+G   LG I +LT +V 
Sbjct: 120 DMLAQILETFGPTVAPVGSFNNEIGAPLTACRSNEDTSFLVSEMGARGLGHISWLTSIVP 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +  AHL  F   E IA AK EI   L   G   LN  D+    + +++H   
Sbjct: 180 PDVAMVLNVGIAHLGEFGSREVIAQAKGEIVGALAPDGWAVLNAADNLIAGMASRTHG-- 237

Query: 244 IKTIYSFGKSKN---ADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHG----IGYH 291
              I  F    +    D ++  W +       ++    +  +              +G H
Sbjct: 238 --HIAWFSPDADHRRPDAEIEAWAESIHADDLDRHSFTLAARYGGTTWRSPVSLTTMGAH 295

Query: 292 MAQNMLMTLGIVSILTADVD------TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              N +          A  D          A ++ +       R +         L+++ 
Sbjct: 296 QVANAVAATAAALAALAMNDGTDEQTVIQIAGALSNAVSRSAMRMQLRERADGLVLVEDC 355

Query: 346 YNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           YNANP SM A+++ +  +     +   + R +AVLGDM E+G  S   + +     +   
Sbjct: 356 YNANPDSMAASLAAMGHVLAARRARDPQTRGVAVLGDMLELGADSARLNAESGRRAAQAG 415

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              +   G    ++ D            T++     +       DVV++K+S      R+
Sbjct: 416 FDVIIAVGDEAESIADGAQTEGAHVIVATVEEAARSL--GWTSHDVVLLKASRGLALERV 473


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/469 (23%), Positives = 205/469 (43%), Gaps = 14/469 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60
           +     ++  IQ   +        V  + +DSR +    Q  +FAI G H++GH+F+   
Sbjct: 1   MLVIKQIVPIIQATLVQQTQSDQAVYHLLLDSRKLYNPSQALYFAINGEHHNGHEFVAEL 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +G    V+  ++ A +   +  +  V   + AL ++A A R + +  +I +TGS GKT
Sbjct: 61  YARGVRNFVIEENLPAHVKLPNANILKVTSAVNALQQVAAAHRNQYQIPVIGVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L+   K      SYN+  GVPL++ +M      GIFE G+S   E+  L  
Sbjct: 121 MVKEWLAKLLAEDFKVVKSPKSYNSQTGVPLSVWQMNKRHTMGIFEAGISAKNEMTALQK 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P I + T +  AH   F    +  + K ++FE  +      +   +         + 
Sbjct: 181 VIQPSIGIFTNLGTAHDEGFDNRTQKFAEKWKLFEHCK----AVVCCAEHLQTYHDIVTK 236

Query: 241 ALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  +++GK++ A  +L         +Q+ ++VQ QG++  +    I     +N+L 
Sbjct: 237 TSFSGQPFTWGKNEQAQLRLLDKQTHLTQQQTQLKVQYQGENHFIQAPFIDEASVENILH 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  + +L    D   + ++   P      R           LID+SYN + A +K A+ 
Sbjct: 297 CVATMCLLGLSFDKIQRRIARLRPVS---MRLELKRGMRNTYLIDDSYNNDLAGLKIALD 353

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +S    + +  +I VL DM + G   +  +  +A++L    I  V   G  +   + + 
Sbjct: 354 FMSTQDVNLQ--KIVVLSDMLQSGLPPEKLYQAIAQLLQSKAIDRVIAVGEEIKKHQASF 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V + +T D L   ++ + +   V++VK +    F  L++ L ++
Sbjct: 412 NVLDVVFFDQTKDLLESQVELARLANAVILVKGARRFRFEHLVHQLQQK 460


>gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 423

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 199/441 (45%), Gaps = 37/441 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            IDSR + P + F AIKG + DGHDF+ HA + GA   +V  D              V +
Sbjct: 14  VIDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN------QIIVPN 67

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            +  L +LA     + K  II ITGS GKT+TKE++   LSS    +   G+ N+ IG+P
Sbjct: 68  TVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVLSSEISAFKNEGNLNSEIGLP 127

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L++          I E+    +G+I +L  +  P I V+  +  AH+     +E I   K
Sbjct: 128 LSIINSYRGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSAHVGVAGSVENIFKGK 187

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +I E  ++     +N+DD      K +           FG +   D+ L K +     +
Sbjct: 188 WQIVENSKE---ALVNFDDERMRCTKCR----------YFGTT-GGDYILSKREYNGSST 233

Query: 271 WMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +  + +G+       G     MA + L+  GI  +   DV      L+ + P +GR   
Sbjct: 234 ILTFEYEGEEFYYQLPGYWTKPMALSALVAFGIADM--IDVLFNPLNLANYKPLKGRFNV 291

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +R +       LID++YNA+  S KA I    +I  +    R A++G M E+GE S  +H
Sbjct: 292 HRFSKG----YLIDDTYNASYESFKAGIE---EILENFPKPRYAIVGAMKELGEYSTYYH 344

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG--DVV 447
             L+E+L    +  V +      + KD    +I    ++  + +  F+ + L++   D V
Sbjct: 345 KKLSELLEQ--LDGVVVYDKEEES-KDISCSNIIFRSADDKE-IISFLNNRLINDSFDGV 400

Query: 448 V-VKSSNSCGFYRLINLLLEE 467
           +  K+S +    +++  +L  
Sbjct: 401 LYFKASRAVELDKIVEEVLNR 421


>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70]
 gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70s]
 gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis Sweden2]
 gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/150]
          Length = 450

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 191/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAAER---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI +A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAVARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 192/468 (41%), Gaps = 14/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           +++  +++  I     G      +  +  DSRS+    +  FFA+K    DGH +I    
Sbjct: 2   IYSIEEVITQIGAQRYG-SKSAQIGFLLTDSRSLCFPEETLFFALKTDRNDGHHYISELY 60

Query: 62  QKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++G    VV++  +             V +   AL +LA   R      I+ ITGS GKT
Sbjct: 61  RRGVRNFVVSSVPVDYEHLYPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS          SYN+ +GV L++  +  +   GIFE G+S  GE+  L H
Sbjct: 121 MVKEWLYQLLSPQFFVTRSPRSYNSQVGVALSVWLLNEETQVGIFEAGISEPGEMAALQH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P IAV+T I  AH  NF+ +E+    K  +   L+    +    DD   + +   S 
Sbjct: 181 MIQPTIAVLTNIGDAHQENFASMEDKCREKMIL---LKDAEILVYPADDPIIQKVVNDSD 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G K  +S    K+A F ++  ++ +  + +               I      + +   
Sbjct: 238 LRGKKLAWSMS-DKSAPFYIKTVEKKATMTTITYVYHEHEDWFSIPFIDEASVADAIECA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   +   +    + +    P      R      Q   TLI++SYN++  S+  A+  +
Sbjct: 297 VVALEMGMSMSALDERMQQLEPVA---MRLEVKEGQHGCTLINDSYNSDINSLDIALDFM 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++        R  ++ D+ + G      + +++ +     +S +   G  + A ++ +  
Sbjct: 354 NRRPDQQNRSRTLIISDIDQSGRQPSELYKEVSNLAVKRGVSQLIGIGQQLSANRNLI-E 412

Query: 421 SIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +  T++      + + L D +V+++K +    F +L   L  +
Sbjct: 413 MPKKFFFPTVEAFEKSEVFAQLHD-EVILLKGARRFNFDQLTERLERK 459


>gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 458

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 220/471 (46%), Gaps = 27/471 (5%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MNP + T+       +G   G    G  +G I +DSR I   + F A+ G + DGHDFIL
Sbjct: 3   MNPKIHTWSQYASLAEGMLKGD--DGEFSGLIRVDSRKIEEGDLFVALSGKNMDGHDFIL 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            A  +GA   +V++     I  L   I V  V D    L K+    RL+    +IA+TGS
Sbjct: 61  DAFSRGAHCALVSSSWGEKIRDLPEGIRVIEVADPEQGLIKI-ARHRLKGLKNVIAVTGS 119

Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           VGKT+T+EM+ +AL       Y    S+N  IG  LT+A MP D    I E+G +H GEI
Sbjct: 120 VGKTSTREMIFLALGGSSSGVYRARSSHNTRIGCALTVAEMPEDTSVLILEMGTNHPGEI 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             +  L     AVIT IAPAHL     +E +  AK EI E       +  N D+      
Sbjct: 180 SEMVDLYPVDTAVITEIAPAHLEGLGSLEGVLDAKLEILES-PNLRKVIFNGDNPMLSSA 238

Query: 236 KAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYH 291
             +          S G S +    D +L  W++    S +  + QG+ S  +     G H
Sbjct: 239 VKERSFGKNWQALSVGSSGSYVLEDIRLE-WQERPVLSMIIGEKQGRSSYGIKAKLTGIH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A  + +       L    + A   LS   P  GRG       ++G   ++DESYNANP 
Sbjct: 298 NASLLGIAWATAVELGISPEEASIRLSSIKPYHGRG----VLKDRGGILVLDESYNANPK 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+A + +++Q SP    +R+ +LG+M E+GE S S H ++ +      +  V+L G   
Sbjct: 354 SMEALLDLVAQ-SPFPREKRLLILGEMGELGEGSLSLHEEILKKA--LPLGTVFLFGSMW 410

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++LK        V   E ++ L   ++S L  G  + +K S + G  RL+ 
Sbjct: 411 ISLK------PPVKVYEDIESLSSDLKSLLSKGYFIAIKGSRTNGLERLME 455


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/474 (21%), Positives = 196/474 (41%), Gaps = 24/474 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ + I+   IG   Q  +N +  DSRS+    +  FFA+     DG  +I     
Sbjct: 3   YTIEEITRIIKAKRIGDN-QTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYS 61

Query: 63  KGAGLVVVNTDMVASIGSLS---------IPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +G    V+       +                  V++ L AL KLA   R +    ++ I
Sbjct: 62  RGVRNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGI 121

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKT  KE L   L+S KK      SYN+ IGVPL+L +M  D D  I E G+S   
Sbjct: 122 TGSNGKTVVKEWLHQILASSKKIVRSPRSYNSQIGVPLSLWQMHSDADVAIIEAGISQPD 181

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  L  ++RP I V+T +  AH  NF  ++E    K ++F+  +    +    D+    
Sbjct: 182 EMGALESMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFKHCD---VVIYEADNDLIS 238

Query: 234 LLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
              +KS     +  +S +   +     +   ++   ++ +  +  G         I    
Sbjct: 239 NCMSKSMLTSREIAWSRYDMERP--LFISGIQKDENETTISFRYLGLDNYYKIPFIDEAS 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  L I   L    D     ++   P      R      +    +I++SYN++ +S
Sbjct: 297 IENSIQCLAICLYLMIPADQIRAGMAQLEPIA---MRLEVKEGKNNCLIINDSYNSDLSS 353

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+    + S     +R  +L D+ E G+ + + +  +++++S   +  +   G +++
Sbjct: 354 LDIALDFHYRRSLQKGLKRTLILSDLLETGQNTSTLYRRVSQLISSKQVQRLIGVGKNLM 413

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +I   +      L   IQ      + + +++K +   GF +++  +
Sbjct: 414 NEFSKFS-TIEKDFFNNTADLIEAIQLGRIKFNHESILLKGARRFGFEKVLEEI 466


>gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 472

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/465 (25%), Positives = 196/465 (42%), Gaps = 35/465 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 +  +  DSR   P   F  + G   DGHDF   AV++GA  V+        +  
Sbjct: 20  DAENTVLTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQGAAAVLA----AGPLPG 75

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +++PV  V D + AL +LA   R R+KA ++A+TG+ GKTT KE+L   LS   KT    
Sbjct: 76  INVPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLKEVLAQVLSLGGKTARNA 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            ++NN IG+P  +     D  F I E G+S  G++  L  ++RP IAV+      H    
Sbjct: 136 MNHNNQIGMPRAVLGTDGDEKFWIMEAGISQQGDMDDLGSVLRPDIAVVLNAGTGHTEGL 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              + +A  KA + + L K G   +  D   +  L  ++ A      +  G  ++A+F+ 
Sbjct: 196 G-EKGVAWHKARLLKYLAKGGKGLVCAD---YPDLVREARATETDICFFSGSGRDAEFRA 251

Query: 261 R---------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                                 + L G+  +V     G + A+N+     +  +L  D+ 
Sbjct: 252 VYAGAAPQGAAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGAENVAAVAAVAHMLGLDLQ 311

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L+       R  + +     G + LID++YNANP SM   +   ++ +       
Sbjct: 312 AIRQGLAQARMPAQRFNQVQ----AGSWLLIDDTYNANPLSMGRMLDAAAERAAGRPF-- 365

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           +AVLG M E+G  +   H  L   L+  N S +   G H   ++  L  + +    + + 
Sbjct: 366 VAVLGAMLELGSQAAMEHEALGRRLAGLNPSAIVWKGLHAEDVRKGLTLAGYAGPWQVVT 425

Query: 432 GLFLFIQ------------SSLVDGDVVVVKSSNSCGFYRLINLL 464
               F++             +   G VV+ K S S     L+ +L
Sbjct: 426 DAGEFMKTWQTLQDYGLENKAAKSGGVVLFKGSRSNRLETLVAVL 470


>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 450

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 191/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAAER---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI +A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAVARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDTVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/466 (23%), Positives = 194/466 (41%), Gaps = 20/466 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILH 59
           N ++T  D+   +   S  I P   VN ++ DSR I       FFA+ G   DGH ++  
Sbjct: 3   NKIYTVQDIATIVAVASELIDPSAIVNTLAYDSRKITDAKHALFFALPGRR-DGHQYVQE 61

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + G    VV  + V     L+     V D L AL +LA   R +    +IAITGS GK
Sbjct: 62  AYRAGVRNFVVRPEAVNITDYLNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  KE L   LS          SYN+ +GVPL+L +M    +  I E G+S +GE+  + 
Sbjct: 122 TIVKEWLYQLLSPEYHIVRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAIE 181

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V+P I ++T I  AH   F+  +E    K ++F   +    I  N            +
Sbjct: 182 RMVKPTIGILTNIGHAHDDGFASTKEKTIEKLKLF---KDADKIVYN------PTYVDSA 232

Query: 240 HALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +  +  +++   K A  ++    K+   Q  +E     +S  +    +     +N++ 
Sbjct: 233 IEVPGRHHFTWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENLVC 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              ++  +  +    +  +    P      R          ++ID+SY+ + +S+  A+ 
Sbjct: 293 CWALMLAIGYEAMVIVDRVKRLLPVS---MRLELKKGINNNSIIDDSYSNDLSSLLIALD 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L Q   H   R++ +L D+  +G+   + +  +A +L    +  +   G H+       
Sbjct: 350 FLKQQQQH--SRKMLILSDLPTVGQNQTALYTKVASMLEGKGLDRLIGVGKHLRQHAALF 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +   + +T + L   I    +    +++K S   GF  +   L
Sbjct: 408 R--MDTQFFDTTEQLLTNIPKLEIRDSTILIKGSRVFGFENISKAL 451


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/478 (21%), Positives = 193/478 (40%), Gaps = 16/478 (3%)

Query: 1   MNPLW-----TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDG 53
           M P++     T  ++L+ ++     +V +  +  I  DSR +       FFA++    DG
Sbjct: 1   MTPIYNTIMSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDG 60

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           H +I    + G     +   +   +       +  V + L AL ++A   R+R    +I 
Sbjct: 61  HKYIPQLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S  
Sbjct: 121 ITGSNGKTVVKEFLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E+  L  ++RP + ++T I  AH  NF  + +    K ++F           + D    
Sbjct: 181 MEMLRLQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFV---DADHFVYDADSDEI 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           +     +  L  K I        A + +         + + VQ   +S  V         
Sbjct: 238 QR-GIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDGTTIITVQHADESSTVTIPFADQAS 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN    L ++ +L          L+ F   E    R      Q    LI+++YN +  S
Sbjct: 297 IQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINS 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++ A+    Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  + 
Sbjct: 357 LRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELC 416

Query: 413 ALKDALPRSIH--VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +D   RS      + ET D L    +  ++   + ++VK +    F R++  L ++
Sbjct: 417 NYQDYFQRSGEGKTAFYETTDQLLADDLLGTITHAE-ILVKGARQFQFERIVQHLAKQ 473


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/465 (23%), Positives = 180/465 (38%), Gaps = 12/465 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++  ++   I       +    V+ +  DSR +    Q  FFA++    DGH++I    +
Sbjct: 3   YSIKEIAGIIGA-DAQKLYDAPVSILLTDSRRLSFPEQSLFFALQTKTNDGHNYIQGLYK 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                 VV+T +             V D L AL KLA   R R    +I ITGS GKT  
Sbjct: 62  LRVRNFVVSTFLPEFESMPEANFLVVKDTLKALQKLAAHHRKRFNIPVIGITGSNGKTIV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++
Sbjct: 122 KEFLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSDKNTLGIFEAGISQPDEMERLQPII 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I  AH  NF    +    K  +F   E    I  + DD+F       S  L
Sbjct: 182 APTIGVITNIGEAHQENFISSTQKCLEKLTLFNDCEA---IIYDGDDAFIANCIE-SACL 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K I        A   +   K+   ++ +   L G               +N +  + +
Sbjct: 238 SHKAITWSRTDSEAPLYIESIKKLDSETIIRCTLLGFDRTYTIPFTDDASIENAIHCMAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L     T++  +  F   E    R           LI+++YN++  S+  A+     
Sbjct: 298 MLYLK---PTSVNDIEKFKRLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQS 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                  +   +L D+ + G L +S +  +A+++    I  +   G  +     A    I
Sbjct: 355 RRVEKNLKCTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYGGAF--DI 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +  T D             +++++K S    F R+  LL ++
Sbjct: 413 EKEFYLTTDEFIKSPSFKKFKDELILIKGSRQFHFERISELLEKK 457


>gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
          Length = 470

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 179/433 (41%), Gaps = 23/433 (5%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR   P   + A  G   DGHD+   AV  GA  V+ +  +        +    VDDV  
Sbjct: 36  SRDCVPGSLYVARLGEFADGHDYAPAAVAAGAVAVLGSRPVEG------VATVVVDDVQT 89

Query: 94  ALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           A  ++A     R  +  I+ ITGS GKT+TK++L   LS+  +T A + S N  IGVPLT
Sbjct: 90  AFGQVARGVVDRAPELRIVGITGSSGKTSTKDLLAAVLSTAGETVAPVNSLNGEIGVPLT 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + R+     F + E+G   +G I +LT +  P +A++  +  AH+  F     IA+AK+E
Sbjct: 150 VCRVTPTTRFLVAEMGARGIGHIDYLTRIAPPDVAIVLNVGTAHVGEFGSRANIAAAKSE 209

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSW 271
           +   +   G   LN DD     +     +     +   G+S  A+ +          ++ 
Sbjct: 210 LPRAVRPGGLSILNADDPLVAAMAGGLAS----RVQLVGQSPEAEVRAEATILDELGRAA 265

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            ++        V     G H   N L        L   +     ALS          R  
Sbjct: 266 YDLVTPRGRARVSLRLSGAHHVGNSLAVAAAALELGLPLAQVAAALS--GAVPASRWRME 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    +++++YNANP SM+AA+   +  +    G R AVLG+M E+G   +  H  
Sbjct: 324 ITERPDGVVIVNDAYNANPDSMRAALD--ALAAIATTGERWAVLGEMLELGSDREREHAA 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +    +   I HV   G                 +   +D     + S L  GDVV++KS
Sbjct: 382 IGSYAAGLGIDHVVAVGDGARVYDAP-------DWVPDVDAAHDHLASRLRPGDVVLLKS 434

Query: 452 SNSCGFYRLINLL 464
           S   G   L + L
Sbjct: 435 SRDSGLRWLGDRL 447


>gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/11023]
          Length = 450

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 191/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAAER---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI +A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAVARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 446

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 198/435 (45%), Gaps = 27/435 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I IDSR +   + F A+KG   DG+DFI  A+++GA   V N             VF   
Sbjct: 21  IRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNRSSDNPA------VFFHP 74

Query: 90  DVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D    L + A      SK    IAITGS GKTTTKE+L   LS   K +   G+ N  IG
Sbjct: 75  DPKKLLIEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLNTEIG 134

Query: 149 VPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +P+ +        + D+ IFE G S  G+I FLT LV P IAV+  +  AH  NF+   E
Sbjct: 135 IPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLNVGTAHRGNFNDETE 194

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +   K  IFE L+K  T   N DD   + +++    L  K ++ FG+ +N D ++ K+  
Sbjct: 195 LLQEKCSIFETLQKDSTAITNGDD---KRIRSMISELSCKKLF-FGQ-RNGDLKIMKFDY 249

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +++  +  G+       GI        L+  G   +    +      L++      
Sbjct: 250 SKNNTFVAFKAFGEMKMAKLKGIWN---SGQLLDFGAAYLTALSLKIEEPLLNINRIILP 306

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R+    N     LI++ YN++  S+++AI  ++++      R  AV+G + E G+ S
Sbjct: 307 FNNRFSVE-NIAGIILINDCYNSSLESVESAIKSIAKLKKE---RTFAVVGSILEQGKYS 362

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDG 444
           +  H +L  +L+     H+ L         +A+  + ++ + S   + +  +++ +   G
Sbjct: 363 KKTHEELGRLLNF--FDHIVLYTKDTQV--EAVQNTANIDFKSSNPEEVAEWLKKNCRYG 418

Query: 445 DVVVVKSSNSCGFYR 459
           D+V  K+S       
Sbjct: 419 DLVYFKASRGVALEE 433


>gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
 gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
          Length = 478

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 114/473 (24%), Positives = 195/473 (41%), Gaps = 17/473 (3%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ +A+  G  +G         +  DSR +AP + F  I+G  +DGHDF    V++G
Sbjct: 4   TPNEMREALGAGAILGAQGDATFASVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQG 63

Query: 65  AGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +++   D       S  + +  V D + AL +LA   R+RSKA ++ +TG+ GKTT K
Sbjct: 64  ARVLIAERDPFNGECPSADVTIMVVGDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L     T     + NN IG+PL++     +  F + E G+S   ++  L  ++R
Sbjct: 124 ELLAQVLGVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVLR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
           P I ++  +   H++       +A  K+ +   L + GT  +  D D      ++    L
Sbjct: 184 PDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHLAEGGTGLVCADYDDLVREARSVCRRL 242

Query: 243 GIKTIYSFGKSKNADFQ--LRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +    G    A +   +               V L G   EVV    G   A+N+  
Sbjct: 243 QFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENVAA 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +     +      +         +R+ CA   G F  ID++YNANP S    + 
Sbjct: 303 VAAAAHLCGLSGEEIA---AGLAEAVLPRQRFACATV-GGFVCIDDTYNANPLSSARMVE 358

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +++++    G  + VLG+M E+GE +   H  L   L+      V+  G +  A+   L
Sbjct: 359 AVTEMAA--GGPLVFVLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGL 416

Query: 419 PRSIHVHYSETMDGLFLFI---QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               +      +D    F+    S  +    V+ K S       L     + F
Sbjct: 417 RLGGYGGLFSAVDDTASFVDRFASLGLASAHVLFKGSRGNRLEVLRAAFGDAF 469


>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 450

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAADR---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI  A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAAARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 204/470 (43%), Gaps = 23/470 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL A  G     V     +G S DSR  A  E F A++ P  DGH +I  A+  
Sbjct: 1   MIDLDDLLAA-GGRLASPVYARQFSGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAA 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+          +        DD      + A A   +    +I +TGSVGKT+  
Sbjct: 60  GATGVICEKPPADLSNTTM---IVTDDPALLAARWAAARLRQVAPRVIGVTGSVGKTSAT 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +   LS +  T+    S+N+ IG+P++LAR+  D  F + E G ++ GE+  LT L  
Sbjct: 117 RAIAAVLSGLAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELHRLTALFP 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AV+T+ AP  LS F  + ++      +   L   G   +N DD     L   + A  
Sbjct: 177 PHVAVVTSAAPMRLSAFGSVADLVREYGALVAALPVDGWAVVNGDDPALAGLCDTTRA-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG   + D +    +     + M V  +G+S++ V   IG       L  +G+ 
Sbjct: 235 --RVLTFGTGASCDLRGEAPQYALNGTRMRVCYRGESVDTVIPLIGEPAVGAALAAVGVA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +    ++ A + L++  P  G   R R  L +    +ID++  A P++M AA+  L+ +
Sbjct: 293 LVCGMTLERAAERLALVEPPAG---RLRPHLARSSAIVIDDTVGAEPSAMLAALRTLAIL 349

Query: 364 SPHGEGRRIAVLGDMCE----MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                 RRIAVLGD+       GE + + +  +  + +      +   G     +  A+ 
Sbjct: 350 PAQ---RRIAVLGDLPADSSIPGEQNDT-YAAIGRLAART-ADLLIWKGDAGTHVMRAVQ 404

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           R    +      T+ G    +   L  GD+V+V    +    RL+  L++
Sbjct: 405 RVRTGMSATLVHTIAGALEALPPDLGAGDLVLVCGGATARLERLVAALID 454


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 106/466 (22%), Positives = 206/466 (44%), Gaps = 12/466 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I     G      +  +  DSRS+  A +  FFAIK    DG  ++    +
Sbjct: 3   YTIERITALIGARRYGRA-NASIVFLLTDSRSLCFAEETLFFAIKTMSNDGSKYLSDLYK 61

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VVN      ++   +     V + L AL +LA   R      +I ITGS GKT 
Sbjct: 62  RGVRNFVVNEVPENYAVLYPNSNFLKVSNTLDALQRLAERHRDEFAIPVIGITGSNGKTM 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE +   LS          SYN+  GVPL++  +  +   G+FE G+S  GE+  L  +
Sbjct: 122 VKEWIYQLLSPSLIVTRSPRSYNSQTGVPLSVWLLTNNTQLGVFEAGISEPGEMDSLRDI 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P I ++TTI  AH  NF+ +EE  + K ++F     +  +  N D++  +    +   
Sbjct: 182 IQPTIGILTTIGDAHQENFTSLEEKCNEKLKLF---TDSKLLIYNEDNTLVKRCVEQFSF 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G +   S  +++ +   + K  + +  S +    +G         I     +N +  L 
Sbjct: 239 EGQRFSLSR-QNEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFIDEASIENSIECLA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   L  D +   + ++   P      R      +   TLI++SYN++  S+  A+  +S
Sbjct: 298 IGLYLGIDKNAIEERMASLEPVA---MRLEVKEGRHDCTLINDSYNSDINSLDIALDFMS 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +     E +RI +L D+ + G+     + +++ ++   +++     G  + A +D   + 
Sbjct: 355 RRPDAKERQRILILSDIYQTGKPLSQLYSEVSALMKQRSVNQFIGIGPEIYAHQDCFQQQ 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +    D +   + ++L +  ++++K +   GF ++ +LL+++
Sbjct: 415 NSSFFLTVQDFIDSGLFTNLRNN-IILLKGARRFGFDKITDLLVKK 459


>gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria monocytogenes FSL F2-208]
          Length = 346

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 12/341 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +     +       + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNVPNPPTDF--PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            +  + +    AL      +    R      +    +++++
Sbjct: 309 EIGIEGEKIQSALKNMERSKS---RLEWITTKSGARILNDA 346


>gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9768]
 gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/11074]
 gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9301]
          Length = 450

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAADQ---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI  A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAAARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/458 (23%), Positives = 187/458 (40%), Gaps = 27/458 (5%)

Query: 5   WTF---HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T     +L   + G   G  P+  +  ++IDSR + P + F A+ G H DGHDF+  A 
Sbjct: 1   MTLPAPRELAALLDGELRGTPPEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAE 60

Query: 62  QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             GA LVV+  D     G         V D L AL +LA   R      ++A+TGS GKT
Sbjct: 61  GAGASLVVLRRDRCPDSGPGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             K  LT  L+   +  +  GS+N+ +GVPL +   P   + G+FE G+S  GE+  L  
Sbjct: 121 VVKTALTALLAGRFRVASSPGSWNSQVGVPLAVLTAPPGTELGVFEAGISAPGEMERLEA 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   V+  +  A+L +F      A  K  +F+G++    +    DD     L     
Sbjct: 181 ILQPDHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWVIAP-DDPLVNALPLPCR 239

Query: 241 AL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +  G       G+    +  L +      Q+ + V  + + +             ++L+
Sbjct: 240 RIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPL-----------VDDLLI 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L        + L  +     R + +R        T+I+++ + +P S++ A++
Sbjct: 289 ALTAAHHLGVPAAEMAEVLQDYTFGPTRMETWRTPE---GITIINDTASDDPLSVQTALA 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            ++       GRR+ V G M ++G   Q  H  +  + +    S + L      +   A 
Sbjct: 346 TVAAFPE--GGRRLFVFGGMGDLGPCEQREHALIGRMAAEQGFSGLLLLPHPARSHTAAA 403

Query: 419 PRSIH----VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               H             L   I+     GD V++K +
Sbjct: 404 WNGCHPAQAAQELADTAALRERIRQMAEPGDTVLLKGA 441


>gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 111/473 (23%), Positives = 191/473 (40%), Gaps = 17/473 (3%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +++ +++  G  +G         +  DSR +AP + F  I+G  +DGHDF    V++G
Sbjct: 4   TPNEMRESLGAGAILGAQGDATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQG 63

Query: 65  AGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +++   D       S  + +  VDD + AL +LA   R+RSKA ++ +TG+ GKTT K
Sbjct: 64  ARVLIAERDPFNGECPSADVTIMVVDDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L     T     + NN IG+PL++     +  F + E G+S   ++  L  ++R
Sbjct: 124 ELLAQVLGVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVLR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
           P I ++  +   H++       +A  K+ +   L + GT  +  D D      ++    L
Sbjct: 184 PDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHLAEGGTGLVCADYDDLVREARSVCRRL 242

Query: 243 GIKTIYSFGKSKNADFQ--LRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +    G    A +   +               V L G   EVV    G   A+N+  
Sbjct: 243 QFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENVAA 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +     +      +         +R+ CA   G F  ID++YNANP S    + 
Sbjct: 303 VAAAAHLCGLSGEEIA---AGLAEAVLPRQRFACATV-GGFVCIDDTYNANPLSSARMVE 358

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--- 415
            +++++    G  + VLG+M E+GE +   H  L   L+      V+  G +  A+    
Sbjct: 359 AVTEMAA--GGPLVFVLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGL 416

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                       +          S  +    V+ K S       L     + F
Sbjct: 417 RLGGYGGLFCAVDDTASFVDRFASLGLASAHVLFKGSRGNRLEVLRAAFGDAF 469


>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276]
 gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276s]
          Length = 450

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAADR---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI  A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAAARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/488 (20%), Positives = 191/488 (39%), Gaps = 38/488 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              + Q+I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     +G
Sbjct: 5   IESIAQSIGARRVGEY-EVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIPV----------------------------FGVDDVLGALN 96
               V++ +    + +  + +                              V + L AL 
Sbjct: 64  VRNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKALQ 123

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           KLA   R R    +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++
Sbjct: 124 KLAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQL 183

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F  
Sbjct: 184 SEEAELGIFEAGISEMGEMGALKRMIKPSIGILTNIGGAHQENFFSLQEKCMEKLTLF-- 241

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +    +  + D+       AKS     +  +S    +     +    +  + + +  + 
Sbjct: 242 -KDCDVVIYDGDNELISNCVAKSMLTAREIAWSRTDIERP-LYISCVTKKEDHTVIAYRY 299

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      I     +N+L  L     L    D   + ++   P      R      +
Sbjct: 300 LNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGK 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 357 NNCLLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 416

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               I  +   G  + +        I  ++    + L        +  +V+++K S    
Sbjct: 417 QSRGIDKLIGVGPEISSCAARFDDGIERYFFPNTEALLKSELLKSLHSEVILIKGSRVFN 476

Query: 457 FYRLINLL 464
           F  +   L
Sbjct: 477 FDLVSEAL 484


>gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
 gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
          Length = 463

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 115/454 (25%), Positives = 205/454 (45%), Gaps = 28/454 (6%)

Query: 24  QGFVNGISIDSRSIAP----QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G    + + D  +   
Sbjct: 25  EKVVSFYSLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     R+    IAITGS GKTTTKE+L   LS   
Sbjct: 85  EYLNDNEGLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGISYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGK 252
           AH+  F G++ IA  K++I    +      +N  + +   L  +AK     +K +Y    
Sbjct: 205 AHMQAFRGLQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYF--- 259

Query: 253 SKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               D++    K  S  +         K  E     +G H   N +  + +   L     
Sbjct: 260 ----DYENLNIKSFSFSEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREK 315

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++
Sbjct: 316 EIREGLIETTFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKK 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETM 430
             VLG   E+GE +   H DL +     N   ++L G   L ++D+      +++Y    
Sbjct: 370 FIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVGKYLYYFSEF 429

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           D    F   SL     +V+K S      R++N +
Sbjct: 430 DKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/468 (23%), Positives = 201/468 (42%), Gaps = 20/468 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQK 63
               L+  +     G     FV+ ISIDSRS+   PQ  F A+ G + D H +I   ++K
Sbjct: 4   NLKSLIPVLNAEWTGSDTDIFVDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEK 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G     V        G  +   F V + L AL +LA   R      II +TGS GKT  K
Sbjct: 64  GVQNFAVQYIPENVKGKAN--FFVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS          SYN+ +GVPL++  +    + GIFE G+S + E+  L  +++
Sbjct: 122 EWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINEKHNLGIFEAGISTVNEMVNLEKIIK 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL--N--YDDSFFELLKAKS 239
           P+I V+T I  AH   F  + +  + K  +F   +K+  I    N   D    +      
Sbjct: 182 PNIGVLTNIGSAHDEGFENLTQKINEKLLLF---KKSAVIIYQKNELVDKCLLDFSAQYP 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   +SF    +AD  + K +  ++ + ++ Q + +   +          +N +  
Sbjct: 239 LENRALFSWSFA-DASADVFILKKETKNDSTTIKYQYKDEIFNLEIPFSDSASIENAISC 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++     D       + + +P E    R          +LID+SY+++  S+K A+  
Sbjct: 298 LLVLLHFEYDFTIIQNRMEMLYPVE---MRLEVKNGIHNCSLIDDSYSSDFQSLKIALDF 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L     +    +  +L D+ + G  ++  +  +A+++S   I+ V   G  + + +D  P
Sbjct: 355 LESQKKNAS--KAVILSDIFQSGFSNEELYSKVAQLISDNKINRVIGIGTTISSFQDKFP 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S      +        I++   + + +++K + S  F  +++LL E+
Sbjct: 413 NSTM---FQNTAAFIAEIENLNFNNETILIKGARSFQFEEIVSLLEEK 457


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/483 (22%), Positives = 195/483 (40%), Gaps = 34/483 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRMGKH-KATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIP----------------------VFGVDDVLGALNKLAVAA 102
               V+  +    I +  +                          V + L AL KLA A 
Sbjct: 64  VRNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F   +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDV 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N D+       AKS     +  +S    +     + +  +  + + +  +       
Sbjct: 241 VIYNGDNELISNCVAKSMLTAREIAWSRRDIERP-LYISRVIKKEDHTVISYRYLEMDNT 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N+L  L     L    D   + ++   P      R      +    LI
Sbjct: 300 FCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I+
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLL 464
             L
Sbjct: 476 EEL 478


>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
          Length = 450

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITYIDVQHAMHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAADR---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI  A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAAARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/483 (22%), Positives = 195/483 (40%), Gaps = 34/483 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS+    +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRMGKH-KATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIP----------------------VFGVDDVLGALNKLAVAA 102
               V+  +    I +  +                          V + L AL KLA A 
Sbjct: 64  VRNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F   +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDV 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N D+       AKS     +  +S    +     + +  +  + + +  +       
Sbjct: 241 VIYNGDNELISNCVAKSMLTAREIAWSRRDIERP-LYISRVIKKEDHTVISYRYLEMDNT 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I     +N+L  L     L    D   + ++   P      R      +    LI
Sbjct: 300 FCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I+
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLL 464
             L
Sbjct: 476 EEL 478


>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 494

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 173/467 (37%), Gaps = 54/467 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+       +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++   
Sbjct: 15  SVNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAEREL--- 71

Query: 78  IGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              + +PV  V   L AL+ L+     +   K  +I ITG+ GKT+T  M+   L    K
Sbjct: 72  --DVDVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGK 129

Query: 136 TYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLT 179
               IG+    I              +TL +         VD  I E+    L   R   
Sbjct: 130 RTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGR--V 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFE 233
           H     IAV T +   HL     ++E   AK+ +F  L      E      LN DD    
Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASA 247

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             +  + A     I ++G   NAD   +     ++ +  ++     +  +    +G    
Sbjct: 248 YFEKVTAA----HISTYGIKNNADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  +          +T   A+   H   G   R+     Q  F +I + Y   P S+
Sbjct: 304 YNVLAAVATCIAAGIPFETITAAVEELHGVRG---RFELVNQQQEFPVIVD-YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
           +  ++    ++   EG+   V+G     G+  ++    +A++        ++ S      
Sbjct: 360 ENVLNTCRDMT---EGKLFVVVGC---GGDRDKTKRPKMAKIAVELADEPIFTSDNPRSE 413

Query: 410 HVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              A+    +A   + + H     +    F  ++   GDVV++  K 
Sbjct: 414 DPRAILRDMEAGVENEYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599]
 gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 388

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 164/364 (45%), Gaps = 12/364 (3%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TGS GKTTTKEM+   LS    TY  + + N          R+  +    + E
Sbjct: 19  DKPVIAVTGSAGKTTTKEMIYSILSLRMPTYKSMYNKNFLGNTRAHTKRIRDEHKAAVLE 78

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
            G+   G +R    +++P + VIT I  AH+ NF    +++A AK E+   ++ TGT+FL
Sbjct: 79  YGIYRSGHLRQHCKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTELIRHMKPTGTVFL 138

Query: 226 NYDDSFFELLKAKSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N D  +      + +       I +FGK + AD++  + K        E  L+G+     
Sbjct: 139 NRDCPYSREFVQQPYLGSFTGKIVTFGKEQEADYKAGRTKIEGNGFRFECSLRGEKESFF 198

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   +   VD   + LS F  +  R   YR A N     ++D+
Sbjct: 199 VPIPGEHNLYNALAAIAVAHTMGIPVDDIRRGLSQFRGQRKRLTSYRLANN---IQVLDD 255

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +Y++NP + KAAI VLSQ+   G   +IAVL  M EMG+     H D+   LS  N+ ++
Sbjct: 256 TYSSNPDAAKAAIDVLSQV---GHTTKIAVLASMLEMGKYDVKGHEDVGIYLSQKNVDYL 312

Query: 405 WLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +  G     +  A  RS      V +  +  GL   +   L      +VK SN       
Sbjct: 313 YTLGNSARYIARAAIRSGFPANRVRHCLSKAGLHRRLAKQLKPDTAFLVKGSNRLKMGET 372

Query: 461 INLL 464
           +  L
Sbjct: 373 VQFL 376


>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis G/11222]
 gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-EC]
 gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-LC]
          Length = 450

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + + 
Sbjct: 25  VTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGP--SYGLQLL 82

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+ 
Sbjct: 83  RVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNSQ 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   G +
Sbjct: 143 LTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLDKGAQ 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            I   K+ +   LE+ G   +  D S+F+    K+ A      +SF  S + ADF  R  
Sbjct: 203 GIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSAADR---FSFSMSNETADFYYRAI 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   + +      +E+           N ++ + +  I    +D   +        
Sbjct: 257 HSEG----VLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLFLP 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++           +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G 
Sbjct: 313 AMRFEQQE----HNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGR 366

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
            S   HI  A          ++  G     ++D +  +   + +   +  +   +++ + 
Sbjct: 367 YSDECHIAAARKAVT-KAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQ 425

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GDVV++K S S     L+
Sbjct: 426 QGDVVLLKGSRSLELETLL 444


>gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
 gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
          Length = 448

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 128/439 (29%), Positives = 209/439 (47%), Gaps = 23/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + + 
Sbjct: 26  ISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQAAQAGAVAAVVSKDYCG--DSFGLDLV 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D   AL +         + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+ 
Sbjct: 84  VVQDTTEALKEAGENQGHLFQGTIVGITGSIGKTTTKTFAKTFLSSVYRVYASPKSYNSQ 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204
           + VPL+L     D DF I E+G+S  G +R L  +V P I+VIT IA  H  NF   G+ 
Sbjct: 144 LTVPLSLLMADGDEDFIILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINFPDQGVR 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA  K+ I   L+ +    L  D  ++     +S +    +   +  ++ ADF  +  +
Sbjct: 204 GIAEEKSHI---LQTSRIQLLPKDSPWYSHFIKQSPSSEKFSFAFY--NETADFYYKAIQ 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + S    + +      ++            N+L++  +  +L   VD  I + S      
Sbjct: 259 KDS----VIISTPEGDVDFAVSFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLPP 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+  ++  G   +I+++YNA P +M AA+  +    P   G+ I +LG M E+G  
Sbjct: 315 ---MRFELSMRNG-IQVINDAYNACPEAMIAALDAIPN--PSEGGKVILILGHMAELGNY 368

Query: 385 SQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLV 442
           S+  H  +A + LS  NI  ++  G   L+ +  L   S  V +  +   +   ++S + 
Sbjct: 369 SEEGHAIVANKALSKANI--IFFIGEKWLSSQHLLKSSSCEVSFYPSAQSVEEILKSVVQ 426

Query: 443 DGDVVVVKSSNSCGFYRLI 461
            GD+V++K S +     L+
Sbjct: 427 QGDIVLLKGSRALALESLL 445


>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
 gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
          Length = 494

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 173/467 (37%), Gaps = 54/467 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+       +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++   
Sbjct: 15  SVNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREV--- 71

Query: 78  IGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              +++PV  V   L AL+ L+     +   K  +I ITG+ GKT+T  M+   L    K
Sbjct: 72  --DVNVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGK 129

Query: 136 TYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLT 179
               IG+    I              +TL +         VD  I E+    L   R   
Sbjct: 130 RTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR--V 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFE 233
           H     IAV T +   HL     ++E   AK+ +F  L      E      LN DD    
Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASA 247

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             +  + A     I ++G   +AD   +     ++ +  ++     +  +    +G    
Sbjct: 248 YFEKVTAA----HISTYGIKNDADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  +          +   +A+   H   G   R+     Q  F +I + Y   P S+
Sbjct: 304 YNVLAAVATCIAAGIPFEIITEAVEELHGVRG---RFELVNQQQEFPVIVD-YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
           +  +     ++   EG+   V+G     G+  ++    +A++        ++ S      
Sbjct: 360 ENVLETCRDMT---EGKLFVVVGC---GGDRDKTKRPKMAKIAVELADEPIFTSDNPRSE 413

Query: 410 HVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              A+    +A   + + H     +    F  ++   GDVV++  K 
Sbjct: 414 DPRAILRDMEAGVENAYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
 gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
          Length = 494

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 108/479 (22%), Positives = 168/479 (35%), Gaps = 55/479 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL +I  +       G +  I  DSR +     F  I G   DGH F   A   GA 
Sbjct: 6   LQTLLTSIPAYRTSQDLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGAT 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            ++   ++      +SIPV  V D   A+  L          K  +I +TG+ GKTT   
Sbjct: 66  AILAEKEI-----DVSIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTH 120

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFELG 168
           ++   +         IG+    I              LTL R     +  DV     E+ 
Sbjct: 121 LVEQIVRDAGSETGLIGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222
              L + R  T+     IAV T ++  HL     +EE A AK+ +F  L      EK   
Sbjct: 181 SHALVQGR--TYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKY 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD   + +K  + A     + ++G  K ADF        S  +  ++       +
Sbjct: 239 AIINQDDPVSQRMKTATAA----PVITYGIDKAADFGATDVMVTSSGTTFKLHTPDGDFD 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N L  L     L   +  AI +L       G   R+        FT+I
Sbjct: 295 VRIKMIGKFSIYNCLAALATSYALEIPIHQAITSLEKVQGVAG---RFEIVDAGQDFTVI 351

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  +   ++VL  I      R  A++G     G+  +     +A++   Y   
Sbjct: 352 VD-YAHTPDGL---LNVLETIEEFKRSRVFAIVGC---GGDRDKGKRPQMAKIAIDYATD 404

Query: 403 HVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V+ S         A+       LP +              +  +    GDV+++  K 
Sbjct: 405 PVFTSDNPRSEDPEAIIQDMLAGLPANAVYQVRTDRKEAITYAVNEAQAGDVILIAGKG 463


>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 471

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 190/469 (40%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                +  A+    ++G       +G+  DSR +   E FF I G  +DGH F    ++K
Sbjct: 3   MNLEQIRDALGAVGTLGGADMTVPSGVQTDSRCVRDGELFFCISGERFDGHTFAAEVLEK 62

Query: 64  GAGLVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA  VV       M         PV  V D + AL +LA+  R+ + A +  ITG+ GKT
Sbjct: 63  GACAVVAERPPFSMDEMQDRQDRPVLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   LS    T     + NN IG+PL++     D  F + E G+S   ++  L  
Sbjct: 123 TVKELLAHVLSVRGATARNHLNRNNQIGLPLSMLAATGDERFWVMEAGISQAADMDELGS 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AV+  +   HLS     + +A  KA + + + + G   ++ D  + +LL     
Sbjct: 183 VLRPDLAVVLNVGQGHLSGLGD-KGVAHYKARLLKHIARGGVGLVSAD--YPDLLAEARK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G   ++S        +         E      V+L+ +  E      G + A+N++  
Sbjct: 240 NCGELRLFS-AVDPAVPYFCEYAGPAGEGRGLYRVRLESREFETEAPFRGAYGAENVIAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                IL        + L      + R    R     G + +ID++YNANP S    +  
Sbjct: 299 AAAAHILGLTSAEIAEGLRTAELPQQRFNCRRY----GRWLVIDDTYNANPLSAGRMVES 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
            ++ +       + V+G+M E+GE +   H +L   L     + V+  G H   +++ L 
Sbjct: 355 TAENACGEP--VVFVMGEMLELGEAAAQAHTELGRALGRACPAAVFWKGGHGGHVQEGLH 412

Query: 419 PRSIHVHYSETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  +    D    L  F    +  G  V+ K S S          
Sbjct: 413 AEGWNGPFVPVADAGAFLRAFGALGIASG-TVLFKGSRSNRLETFAEAF 460


>gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
 gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
          Length = 463

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 202/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G    V + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQTIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL +     N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
 gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
          Length = 463

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 200/455 (43%), Gaps = 30/455 (6%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G    +   +  +   
Sbjct: 25  EKVVSFYSLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGK 252
           AH+  F  ++ IA  K++I    +       N  + +   L  +AK     +K +Y    
Sbjct: 205 AHMQAFKELQSIAFEKSKIIG--KNIEIFVANEMNDYCVYLEKRAKIANPNVKIVYF--- 259

Query: 253 SKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               DF+    K  S  +         K  E     +G H   N +  + +   L     
Sbjct: 260 ----DFESLNIKSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREK 315

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L     ++GR +     L +  + ++++SYN N  S  A  +++  +    +G++
Sbjct: 316 EIREGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMDSFMALKNMILDLD--IQGKK 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSET 429
             VLG   E+GE S   H DL +     N   ++L G   L ++  + L     ++Y   
Sbjct: 370 FMVLGSFKELGEFSYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKC-LYYFSE 428

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D    F   SL     +V+K S      R++N +
Sbjct: 429 FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 186/464 (40%), Gaps = 11/464 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++ H + + I       + +  ++ +  DSR +    +  FFA+K  + DGH +I    +
Sbjct: 3   YSIHQVAKIIDAMPT-DLNETAISILLTDSRQVFFPDETLFFALKTKNNDGHRYISELYE 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+                V   L AL +LA   R +    +I ITGS GKT  
Sbjct: 62  LGVRNFVVSDLQPEWEEYEDANFLVVVHTLFALQRLAAYHRNQFNVPVIGITGSNGKTVV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L           SYN+ IGVPL++ +M      G+FE G+S   E+  L  ++
Sbjct: 122 KEWLYQVLHHDFNITHSPRSYNSQIGVPLSVWQMNSHTQLGVFEAGVSQPEEMAKLEAII 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I + T I  AH   F  +++    K E+F   +    I    ++   +     +   
Sbjct: 182 NPTIGIFTNIGQAHQEGFKSMKQKCLEKLELFINCD---VIICEEENELVDECMEIACLS 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  +S   S  +   + K ++    + +   + G + +           +N +  L  
Sbjct: 239 HKRLTWSRKGSNKSPLHIMKVEKLGNSTTIHYSILGMASQFTIPFADNAAIENAIQVLAT 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    + ++   P      R      +    LI+++YN++  S+  A+  L+Q
Sbjct: 299 AIYLHLPLPDINQRMADLEPVA---MRLDVRQGKNNTILINDTYNSDINSLGIALDFLAQ 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   + R++ ++ D+ + G + +  +   + ++    I  +   G  +   KD      
Sbjct: 356 RATDSQKRKVLIISDIPQSGLIPKELYYLASNLVLNKKIDVLIGIGKEISTYKDLFKNDE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              ++ T D +   I S   D   +++K + S  F  + N LLE
Sbjct: 416 MHFFNTTNDFIHSNIWSDFHDM-FILLKGARSFSFESI-NKLLE 457


>gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 463

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 205/457 (44%), Gaps = 34/457 (7%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G    V + D  +   
Sbjct: 25  EKIVSFYSLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 85  EYLNDNEELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFG 251
           AH+  F  ++ IA  K++I    +E      LN  + +   L  KAK     +K +Y   
Sbjct: 205 AHMQAFKELQVIAFEKSKIIGRNIE---IFVLNEMNDYCVYLEKKAKIENPNVKIVYF-- 259

Query: 252 KSKNADFQLRKWKQCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                DF+    K  S    + + +   +G   E     +G H   N +  + +   L  
Sbjct: 260 -----DFENLNIKSFSFLEGKIFYDFIYKG--FEYSILLLGRHNIFNAIGCINLALFLGM 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                 + L     ++GR + +     Q  + ++++SYN N  S  A   ++  +  + +
Sbjct: 313 GEKEIREGLIETAFQKGRAEIF----TQNGYLILNDSYNGNMGSFMALKDII--LDLNIQ 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYS 427
            ++  +LG   E+GE     H DL +     N   ++L G   LA++D+        +Y 
Sbjct: 367 NKKFIILGSFKELGEFEYKTHKDLIQEAISMNFDKIFLIGEEFLAVRDSENLVEKCLYYF 426

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              D    F   SL     +V+K S      R++N +
Sbjct: 427 SEFDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 109/466 (23%), Positives = 191/466 (40%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           + ++L   +QG  I     P  F+  + IDSR +       FFAI G H+DGH  I    
Sbjct: 27  SVNELPGIVQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHAHITEMY 86

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KG  + +V   +  +          V   + AL   A   R +    I+AITGS  KT 
Sbjct: 87  KKGVRIFIVEKSISLNEIP-QAACIRVKSSVSALQACAAYRRKQLDIPIVAITGSNAKTI 145

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L+  +++         SYN+ IGVPL++  +      GIFE G+S   E++ L  +
Sbjct: 146 VKEWLSQTVAADYSVVKSPRSYNSQIGVPLSVWALNERHTIGIFEAGISTTKEMQALQKV 205

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + P I + T I  AH   F   EE    K ++F   +    +    D    E + A+  A
Sbjct: 206 IEPTIGIFTNIGSAHDKGFKNREEKIQEKLKLFADCK---VVIYCSD---HEEIHAEITA 259

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + T +++    +A  +     + S Q+ +EV+ +          +     +N L    
Sbjct: 260 QHLPT-FNWSLQSSATIEYSIAAKDSFQTQIEVKTKEHQGFFYLPFVDDASIENALHVAT 318

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L   +    + +S        G R           LID+SYN + A +  A+  L 
Sbjct: 319 TLFYLGYSIQEVSRKISGLQAV---GMRLELKEANNDCYLIDDSYNNDLAGLSIALDFLE 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +       +  +L D+ E G  S   + ++A  L+   +  V   G  +  LK     +
Sbjct: 376 HVKQSEV--KTVILSDVLESGLDSAVLYKEVASYLTTAQVQRVIAIGSQITELKK--WYN 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               Y  T +     +  ++ + ++V+VK +    F ++++ L  +
Sbjct: 432 GRAEYYPTTEAFIKDLTKTVFEKEIVLVKGARIFQFEKIVSRLQHK 477


>gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
 gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
          Length = 463

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 200/455 (43%), Gaps = 30/455 (6%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G    +   +  +   
Sbjct: 25  EKVVSFYSLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGK 252
           AH+  F  ++ IA  K++I    +       N  + +   L  +AK     +K +Y    
Sbjct: 205 AHMQAFKELQSIAFEKSKIIG--KNIEIFVANEMNDYCVYLEKRAKIANPNVKIVYF--- 259

Query: 253 SKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               DF+    K  S  +         K  E     +G H   N +  + +   L     
Sbjct: 260 ----DFESLNIKSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREK 315

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L     ++GR +     L +  + ++++SYN N  S  A  +++  +    +G++
Sbjct: 316 EIREGLVETAFQKGRAE----ILTKNGYLILNDSYNGNMDSFMALKNMILDLD--IQGKK 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSET 429
             VLG   E+GE +   H DL +     N   ++L G   L ++  + L     ++Y   
Sbjct: 370 FMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEK-RLYYFSE 428

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D    F   SL     +V+K S      R++N +
Sbjct: 429 FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|330888578|gb|EGH21239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 350

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 165/355 (46%), Gaps = 15/355 (4%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGS GKTT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S 
Sbjct: 1   AMTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASR 60

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI F   L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  
Sbjct: 61  VGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKA 120

Query: 232 FELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIG 289
           F + + ++   G + I +F      AD         +       +       +V  + +G
Sbjct: 121 FPVWRKRA---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLG 177

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L        L   ++  +  L+   P +G   R    +      +ID++YNAN
Sbjct: 178 AHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKG---RAVVQIASNGTRIIDDTYNAN 234

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PAS+ AA+++L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G 
Sbjct: 235 PASINAAVNILTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAAG-KVSALYAVGP 289

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +     A     H ++  +   L   + +       +++K S S     ++  L
Sbjct: 290 LMTHAVSAF--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 342


>gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
 gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
          Length = 465

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 116/473 (24%), Positives = 211/473 (44%), Gaps = 28/473 (5%)

Query: 7   FHDLLQAIQ-GHSIGIVP--QGFVNGISIDSRSI----APQEAFFAIKGPHYDGHDFILH 59
             D+L +++    IG V   Q  V+  S+DSR I    +    +FA KG   DG  F+ +
Sbjct: 6   IKDILDSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKY 65

Query: 60  AVQKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +  G    V + D              +      +V+  L  LA     +++   IAIT
Sbjct: 66  LIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEML   LS   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE
Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGE 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  +  ++ P I ++T ++ AH+  F  ++ +A  K++I    + T  + LN        
Sbjct: 186 MNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQHVY 243

Query: 235 LKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L+  + ++     I+ F        Q+R +   +++   +   +G   +      G H  
Sbjct: 244 LEEIAKSVNPNINIFYFEFHN---LQIRSFSFVNDKFSYDFTYKG--CDYSILLPGKHNI 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  + +   L    +     L     ++GR +  R       + ++++SYN N +S 
Sbjct: 299 CNAISCINLALFLGLSENEIRNGLLHADFQKGRAELVRIK----DYLVLNDSYNGNLSSF 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            A   ++  +    + R+I VLG   E+G+ +   H    E + L N   V+L G    A
Sbjct: 355 MALKEMI--LDLEIKDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKVFLIGEEFQA 412

Query: 414 LK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +K  D+L  +  + Y    +       ++L  G  + +K S +    R+++ L
Sbjct: 413 VKRVDSLSSNSCLFYFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 189/470 (40%), Gaps = 11/470 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           + T  ++L+ ++     +V +  +  I  DSR +       FFA++    DGH +I    
Sbjct: 1   MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY 60

Query: 62  QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + G     +   +   +       +  V + L AL ++A   R+R    +I ITGS GKT
Sbjct: 61  EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  L  
Sbjct: 121 VVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLRLQR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP + ++T I  AH  NF  + +    K ++F           + D    +     + 
Sbjct: 181 IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFV---DADHFVYDADSDEIQR-GIDNL 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L  K I        A + +         + +  Q   +S  V          QN    L
Sbjct: 237 GLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIPFADQASIQNATHCL 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++ +L          L+ F   E    R      Q    LI+++YN +  S++ A+   
Sbjct: 297 CLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQ 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  +   +D   R
Sbjct: 357 KQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQR 416

Query: 421 SIH--VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S      + ET D L    +  ++   + ++VK +    F R++  L ++
Sbjct: 417 SGEGKTAFYETTDQLLADDLLGTISQAE-ILVKGARQFQFERIVQHLAKQ 465


>gi|58038639|ref|YP_190603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
 gi|58001053|gb|AAW59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
          Length = 373

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 199/373 (53%), Gaps = 9/373 (2%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           + AL  L   AR R +  ++AITGSVGKTTTK+ML +ALS+I  T+A + SYNNH GVPL
Sbjct: 1   MTALVDLGRNARARFRGKVVAITGSVGKTTTKDMLKVALSAIGPTHAAVASYNNHWGVPL 60

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TLAR+P D  F I E+GM+H+GEI  L   VRP +A+ITTI  AHL +   IE IA  K+
Sbjct: 61  TLARLPQDARFCISEIGMNHIGEIAPLAAQVRPDVAIITTIGTAHLGHMGSIEAIAQEKS 120

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++F  L   G   +  DD+  +     +   G   ++  G S+ A  ++      +E S 
Sbjct: 121 DLFSALSDKGIAIVP-DDAAGQEHFQTALPAGCA-LWRSGFSETAQLRIENLHCSAEGSH 178

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             + L      V     G H+A+N  + LG V+ L  DV  A  AL  F P  GRG+   
Sbjct: 179 FSLHLPSGIQNVTLTAPGEHLARNAALALGAVAALGEDVAVAATALQNFVPGAGRGQMRT 238

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    L+DESYNA+  S++AA++ L+ +      R IA LGD+ E+G  + + H  
Sbjct: 239 IL---NDVRLLDESYNASTPSVRAALATLALLPAQ---RHIAALGDIRELGTFADAEHRS 292

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           LA+ +        +  G H+ AL DALP  +   Y+     L   +  +L  GD+++VK 
Sbjct: 293 LADAVQNAKA-IAFCCGPHMRALYDALPSELQGGYAADAASLAPLLLKALRPGDLLLVKG 351

Query: 452 SNSCGFYRLINLL 464
           S       +I++L
Sbjct: 352 SFGSRMRDVISVL 364


>gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
 gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
          Length = 356

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 162/367 (44%), Gaps = 21/367 (5%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + G
Sbjct: 4   TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VDDVL A  +LA     ++   + A+TGS GKTTTK+
Sbjct: 63  AAATLSEKEVANH------PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L RP
Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADSIVEDYL------PTD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K +  FG  + A+ ++    +  +    +     ++++      G + A N ++   +  
Sbjct: 231 KKVVRFG--QGAELEITDLVERKDSLTFKANFLEQALD--LPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A   F   E    R           ++ + YNANP +MK  +   S I 
Sbjct: 287 QEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343

Query: 365 PHGEGRR 371
            +  GR+
Sbjct: 344 ANEGGRK 350


>gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
 gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
          Length = 439

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/468 (24%), Positives = 196/468 (41%), Gaps = 50/468 (10%)

Query: 1   MNPLWTFHDL-----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M P  T  +L          G           + +  DSR + P  AFFA+ G    G +
Sbjct: 1   MVPSNTPKELRPEWVASLTGGQVHPGA--SVAHDLHWDSRQVGPGVAFFALPGARTHGRE 58

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F   AVQ GA  VV + +   +          V     AL  +  A R + + +++A+ G
Sbjct: 59  FGQQAVQAGAAFVVSDLNHPGA--------VQVARPERALLAVGRALRDQFRGSVLAVGG 110

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTKE L   L+      A  G+ NN  G+      +    +  + ELG+  L E+
Sbjct: 111 SSGKTTTKECLAQGLA----WPAPEGNLNNAPGLTRFFFHLEP-AEGCVVELGIDRLLEM 165

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT+L RP I V+T +   HL     +E +   ++ + + +       +          
Sbjct: 166 AELTYLARPDIGVLTGLGVEHLEGLGNLENVVREESWLLQ-VSPLRLASV---------- 214

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              +  L +  + ++G  +  DF+    +   E +      +GK + + + G+G      
Sbjct: 215 -QAAELLDLPNLVTYGI-EAGDFRAEGVEMGLEATRFRF--EGKVVHLPYPGVG--PVMG 268

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  +L   +   I+ L+      GR +R R     G    I ++YNANP S KA
Sbjct: 269 ALAALAVARMLDKPLAQTIERLAALRLPPGRMQRLRL----GGIDFIHDAYNANPLSFKA 324

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            ++ L        GR+  VLG M E+G+ +   H++ A + +  + + V++  F      
Sbjct: 325 GMAFLQAQP----GRKWLVLGRMAELGQEALKHHLEAARLAAAVSPNLVFVGPFAKQQAA 380

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +A   +      ET++     +   +  GD+V +K+S S G  RL+ L
Sbjct: 381 EAGGTA-----VETIEEAVQLLFGKVQPGDLVYLKASRSVGLERLLEL 423


>gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 463

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 201/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL +     N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/464 (21%), Positives = 195/464 (42%), Gaps = 11/464 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++ H + + +    +  +    ++ +  DSR +    +  FFA+   + DGH +I    +
Sbjct: 3   YSIHKIAKILDA-IVSDLNDADISILLTDSRQVFYPAETLFFALSTKNNDGHKYINELYE 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+  +             V + L AL ++A   R +    +I ITGS GKT  
Sbjct: 62  LGVRNFVVSQILPDWENYNDANFLVVTNTLAALQRIAAYHRNQFDIPVIGITGSNGKTVV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L           SYN+ IGVPL++ +M      GIFE G+S   E+  L  ++
Sbjct: 122 KEWLYQILHQDFNITHSPRSYNSQIGVPLSVWQMNDHTQLGIFEAGISQPEEMSKLEAII 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I ++T I  AH   F  +++    K E+F   +    I    ++   +     +   
Sbjct: 182 RPTIGILTNIGQAHQEGFKSMKQKCLEKLELFINCD---VIICEEENELIDECMEIACLS 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  +S   S  +   + K ++  + + +   + G + ++V         ++ +  L  
Sbjct: 239 HKRLTWSRRGSSKSPLYIMKIEKQEKSTTIHYSVLGMASKLVIPFSDDASIEDAIHVLAT 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    + +S   P      R      +   TLI++SYN++  S+  A+  L+Q
Sbjct: 299 AFYLHMSLPDINERMSTLEPVA---MRLDVRQGKNNSTLINDSYNSDINSLNIALDFLAQ 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   E +++ ++ D+ + G + +  +   A ++    I  +   G  + A K+    + 
Sbjct: 356 RATTSEQKKVLIISDIPQSGLIPRELYYLAANLVLNKKIDLLIGIGQEISAHKEMFKDTE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + ++ T D +   I     D   +++K + S  F  + N LLE
Sbjct: 416 SLFFNTTEDFIHSNIWHDFHDM-FILLKGARSFSFESI-NKLLE 457


>gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
 gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
          Length = 465

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/473 (24%), Positives = 212/473 (44%), Gaps = 28/473 (5%)

Query: 7   FHDLLQAIQ-GHSIGIVP--QGFVNGISIDSRSI----APQEAFFAIKGPHYDGHDFILH 59
             D+L +++    IG V   Q  V+  S+DSR I    +    +FA KG   DG  F+ +
Sbjct: 6   IKDILDSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKY 65

Query: 60  AVQKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +  G    V + D              +      +V+  L  LA     +++   IAIT
Sbjct: 66  LIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEML   LS   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE
Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGE 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  +  ++ P I ++T ++ AH+  F  ++ +A  K++I    + T  + LN     +  
Sbjct: 186 MNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQYVY 243

Query: 235 LKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L+  + ++     I+ F        Q+R +   +++   +   +G   +      G H  
Sbjct: 244 LEEIAKSVNPNINIFYFEFHN---LQIRSFSFINDKFSYDFTYKG--CDYSILLPGKHNI 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  + +   L    +     L     ++GR +  R       + ++++SYN N +S 
Sbjct: 299 CNAISCINLALFLGLSENEIRNGLLHADFQKGRAELVRIK----DYLVLNDSYNGNLSSF 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            A   ++  +    + ++I VLG   E+G+ +   H    E + L N   ++L G    A
Sbjct: 355 MALKEMI--LDLEIKDKKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKIFLIGEEFQA 412

Query: 414 LK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +K  D+L  +  + Y    +       ++L  G  + +K S +    R+++ L
Sbjct: 413 VKRVDSLSSNSCLFYFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465


>gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi N40]
          Length = 463

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 201/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL +     N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 189/470 (40%), Gaps = 11/470 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           + T  ++L+ ++     +V +  +  I  DSR +       FFA++    DGH +I    
Sbjct: 1   MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY 60

Query: 62  QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + G     +   +   +       +  V + L AL ++A   R+R    +I ITGS GKT
Sbjct: 61  EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  L  
Sbjct: 121 VVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEYTLAIFEAGISMPMEMLRLQR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP + ++T I  AH  NF  + +    K ++F           + D    +     + 
Sbjct: 181 IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFV---DADHFVYDADSDEIQR-GIDNL 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L  K I        A + +         + +  Q   +S  V          QN    L
Sbjct: 237 GLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIPFADQASIQNATHCL 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++ +L          L+ F   E    R      Q    LI+++YN +  S++ A+   
Sbjct: 297 CLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQ 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  +   +D   R
Sbjct: 357 KQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQR 416

Query: 421 SIH--VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S      + ET D L    +  ++   + ++VK +    F R++  L ++
Sbjct: 417 SGEGKTAFYETTDQLLADDLLGTISQAE-ILVKGARQFQFERIVQHLAKQ 465


>gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum rubarum]
          Length = 495

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 105/482 (21%), Positives = 188/482 (39%), Gaps = 41/482 (8%)

Query: 10  LLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +L+       G  +       G+S D+R + P   F A++G  +DGHD++  A +KGA  
Sbjct: 14  VLRETSAREEGPALPDDTPFAGVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARA 73

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKE 124
            +V+  + A+      P+  V D   AL  LA A    R      ++ +TG+ GKTTT+E
Sbjct: 74  ALVSRSVEATG-----PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRE 128

Query: 125 MLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +L + LS+  +       ++NN IGVP TL          + E+G+   G++ +L+ ++ 
Sbjct: 129 LLCLVLSAEGRRPHTNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMDYLSSVLV 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              +++T++   HL     +E +   K+ +   +   G I L  D   F    +      
Sbjct: 189 SDASIVTSVGEGHLETLGSVEGVWKEKSHLLNWVRPGGAIVLPLD-LLFRYPASPVFRER 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---------------QLQGKSMEVVHHGI 288
            +  +      +     R  +   E S +                     +S        
Sbjct: 248 QRRFFFVELDPDPGDSARGPRSVPEGSTILTGTLRKEEGGKWILSGTTGPESFSWKMPSP 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +A + L+ L   + L   +      L  F P  GR +  R         L+ + YN+
Sbjct: 308 SSILAMDALLALAAGNALGVSLQEGANHLENFSPLPGRMQEKRTPE---GALLLLDHYNS 364

Query: 349 NPASMKAAISVLSQ-------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           NP S++ A    ++       +S    G+ +AVLGDM E+GE S   H +   + +    
Sbjct: 365 NPLSLRGAFQWCAEVWKKEATLSRGEPGKLLAVLGDMLELGEDSPRLHREAGRIAAETPF 424

Query: 402 SHVWLSGFHVLALKDAL--PRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           S ++  G      ++     +                  +   L  GDVV++K S     
Sbjct: 425 SAIFYKGDFFQEFREGYLSGKGEEARLVPLSGPPSSGQGVFPILTRGDVVLIKGSRGMHL 484

Query: 458 YR 459
            +
Sbjct: 485 EQ 486


>gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
 gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
          Length = 463

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 201/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFIALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL +     N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGAFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
          Length = 463

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 201/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL +     N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGAFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 492

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 105/479 (21%), Positives = 183/479 (38%), Gaps = 52/479 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+    DLL+ ++ H I   P   ++G+  DSR   P+  F AIKG   DG  ++  A+
Sbjct: 8   RPIMRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAI 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
           + GA  VV + D+    G   + V  V+D   A+ K+         SK T+I ITG+ GK
Sbjct: 67  KNGAVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL-------ARMPVDVDFG 163
           T+   ML   L         +G+  N I           P +L         +   V + 
Sbjct: 124 TSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYV 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L   R         IAV T ++  HL     +EE A  K+++F+  +K    
Sbjct: 184 VMEVSSHSLALHR--VDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKAS-- 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +  ++   S       + ++G    A    ++ K        +VQ+Q K  E+
Sbjct: 240 VINIDDKYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEI 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +   L   + +  +A         +G+       + F+  ID
Sbjct: 296 SLKIPGLFSVYNALAAITVADFLGIPLRSVREA---LSHVTVKGRFEPVETGRDFYVFID 352

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  ++  +  L +      GR+I V G     G+  +S    + EV   Y    
Sbjct: 353 --YAHTPDGIRNIMEALKEYEA---GRKILVFGA---GGDRDKSKRPLMGEVAGKYADFC 404

Query: 404 VWLSG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S           +  +++ + + +      E       +  S+    DV+++  K 
Sbjct: 405 ILTSDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 463


>gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
 gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
          Length = 464

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 110/450 (24%), Positives = 200/450 (44%), Gaps = 24/450 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL +     N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              F   SL     +V+K S      R++N
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILN 461


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 118/470 (25%), Positives = 212/470 (45%), Gaps = 22/470 (4%)

Query: 1   MNPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFI 57
           M+PL  + H+++  +  +  GI    + + ISIDSRS+       FFA+ GP+ D H +I
Sbjct: 1   MDPLTISLHNIIPILDANFQGIDENIYYDTISIDSRSLQNNENTLFFALVGPNNDAHIYI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + KG    VV        G  +     V + L AL   A   R      II ITGS 
Sbjct: 61  GDLISKGVKNFVVTYIPKRLTGKAN--FLIVKNTLVALQIFARYYRNLFHFPIIGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ +GVPL++  +  + + GIFE G+S   E+  
Sbjct: 119 GKTIVKEWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINENHNLGIFEAGISTKDEMEN 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I ++T I  AH   F+ I E    K ++F  +E    + LN + +    +  
Sbjct: 179 LQKIIQPTIGILTNIGTAHDEGFADISEKIKEKLKLFTAVE---VLILNKNKTIETFINK 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +     T       ++AD   +K K  ++ + + +  QGK  ++    I     +N +
Sbjct: 236 EINTFTWST-----NDQSADVFFQK-KTLNDHALLNITNQGKYFKIKIPFIDEASLENSM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + ++  L  D+DT    +S   P E    R +        TLID+SY+++  S+K A+
Sbjct: 290 HCILVMLYLKYDLDTIKHRISQLFPVE---MRLKVKNGINNCTLIDDSYSSDFQSLKIAL 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L     H   ++  +L D+ + G  ++  ++ +++++    I+ V   G  +   K+ 
Sbjct: 347 DFLENQKQHL--KKTLILSDIYQSGLENEDLYVRVSQLIISNKINRVICIGGVISKYKNK 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               ++V    + +       +     + +++K S    F +++ LL E+
Sbjct: 405 F---LNVISYLSTNDFIEDFDNLDFTNETILIKGSRHFEFEKIVTLLEEK 451


>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 513

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF+    +  S  S  +++    +
Sbjct: 234 KIAVLNADDEESVRMQKATAA----HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
 gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
          Length = 490

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 176/467 (37%), Gaps = 54/467 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S+       +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++   
Sbjct: 15  SVNDFHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAEREL--- 71

Query: 78  IGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              +S+PV  V +   AL+ L+     +   +  +I ITG+ GKT+T  M+   L    K
Sbjct: 72  --DVSVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGK 129

Query: 136 TYACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLT 179
               IG+    I                +  T  +M  +  D  I E+    L   R   
Sbjct: 130 RTGLIGTMYIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGR--V 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFE 233
           H     IAV T +   HL     ++E   AK+ +F  L      EK     LN DD    
Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASA 247

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             +  + A     I ++G   +AD   +  K  ++ +  E+     +  +    +G    
Sbjct: 248 YYEKVTAA----HISTYGIKNDADVMAKHIKTTAQGTSFELVTNKGTKPITISLVGQFNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  +          +T  +A+   H   G   R+        F +I + Y   P S+
Sbjct: 304 YNVLAAVATCIAAGIPFETVAEAVEELHGVRG---RFELVNKNQEFPVIVD-YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
           +  +     ++   EG+   V+G     G+  ++    +A++        ++ S      
Sbjct: 360 ENVLKTCKDMT---EGKVFVVVGC---GGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSE 413

Query: 410 HVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             LA+    +A   + + H     +    F  ++   GDVV++  K 
Sbjct: 414 DPLAILRDMEAGVENEYYHSIANREQAIFFAIANARKGDVVLIAGKG 460


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 102/465 (21%), Positives = 191/465 (41%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +  +G  I       ++ I+IDSR +    +  F ++ G    G DFI   +  
Sbjct: 6   SIDQIAEITRGELIQNDHIQKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIPALIDL 65

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V+         L       VDD   AL ++A   R   +  +++ITGS GKT  
Sbjct: 66  GVRNFIVHKGNSLKRELLAKANFVLVDDTRKALQEIARYQRSYFEKPVVSITGSNGKTIV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   LS   +      SYN+ +GVPL++  +       I E G+S  GE+  L  ++
Sbjct: 126 KEWLGQVLSQAYQVAKSPKSYNSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAALERII 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++ + T I  AH   FS  E     K  +F+G   +  +    D      +       
Sbjct: 186 QPNLGIFTNIGSAHKEGFSSQESKILEKLSLFKG---SDFLVYCKDQELPASIIE--QEF 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++     AD+      Q      + ++    +M            +N+   L  
Sbjct: 241 SADKLIAWSDKAGADYTRSIKIQDVGAKIIFIKSDLSTMTFHVPFSDPASLENITHVLVG 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L+   P +    R           LID++YN + A +K A+  L+ 
Sbjct: 301 AMTLGLKPELIQQGLNHLKPVD---MRLTLKPGVNDSLLIDDTYNNDLAGLKVALDFLNL 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             P  + R+I +L D+ + G  +   + ++AE++  +++  +   G H+  L+   P+  
Sbjct: 358 QRP--KKRKILILSDLLQQG-TAAQLYSEVAEMVKSHHLDQIIGVGQHIFQLESFFPKQF 414

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + YS+T + L   +       D++++  +   GF R++N L + 
Sbjct: 415 -IGYSDT-EKLLDELNPEEFSNDLILITGARPFGFERVVNKLQQR 457


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 189/463 (40%), Gaps = 22/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   +   I   S    P   ++ +  DSR +       FF +KG   + H +I     
Sbjct: 6   YSIEQISALISEKSSLPFPNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYH 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG    V                    D L AL  LA   R +    +I ITGS GKT  
Sbjct: 65  KGVRSFVYYDQGFDITNFPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGKTVV 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L+          SYN+ IGVPL++ +M    +  IFE G+S  GE+  L  ++
Sbjct: 125 KEWLYQLLAYKYTIVRSPKSYNSQIGVPLSIWKMDTLYNLAIFEAGISQTGEMERLEKII 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V T I  +H   FS  EE  + K ++F  + K   +  N    F E      +A 
Sbjct: 185 KPSIGVFTNIGSSHDEGFSDKEEKIAEKFKLFAHVNK---LICNK--EFSE------YAP 233

Query: 243 GIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +Y++    N A+  +++       + ++   + + + +          +N +  L 
Sbjct: 234 QSVDLYTWSLDDNTANLYVKEISVEDTGTSIKSTYEDREISIKIPFKDKASTENAITCLL 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++ +           +S  HP +    R          ++ID+SYN++ +S++ A+  L+
Sbjct: 294 VMLVFGYSESEIEDKMSKLHPVK---MRLEMKSGINNTSIIDDSYNSDLSSLEIALDFLN 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
               H    +  +L D+ + G   Q  +  +A +L    +  V   G  +   ++    +
Sbjct: 351 HQQQHQN--KTLILSDIQQSGLDGQQLYQTVARLLESKGVDKVIGIGEEISKHQNLFGSN 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +S+T + L     S+  D + +++K + + GF ++ + L
Sbjct: 409 SSF-FSDTSNFLDKLDLSAFRD-ETILLKGARTFGFEKISSAL 449


>gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
 gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
          Length = 435

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 210/439 (47%), Gaps = 22/439 (5%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++IDSR + P + FFA+ G   DGH+F+ HA Q GA   V++ +      +  +   
Sbjct: 14  ISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKG--DNYGLEFV 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   AL +  +      +  II I+GS+GKTTTKE   + LSS+ + +    SYN+ 
Sbjct: 72  RVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLSSVYRVFMSPKSYNSQ 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH-LSNFSGIEE 205
           + VPL++     D DF + E+G+S   ++  L  +V+P +AVIT IA  H +    GI+E
Sbjct: 132 LTVPLSILMADGDEDFLLLEMGVSEPKDMHNLLSIVQPEVAVITHIATQHTMHFPRGIQE 191

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I   K +I +G   +    L  D  +++ L   S +   K  +SF   + ADF  +    
Sbjct: 192 IVEEKRQILQG---SSLQLLPKDSPWYKDLCEVSPS-AEKFSFSF-HDQAADFCYKSLDS 246

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 + +Q   + + +           N+L+++ +  +L   ++  I +L        
Sbjct: 247 HG----VTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLETPLEHLISSLPDLKLPPM 302

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +       +    +I+++YNA P +M AA+  L    P   G+ I +LG M E+G  S
Sbjct: 303 RFE----QSLRNGIHVINDAYNACPEAMLAALEALPS--PSNGGKVILILGHMAELGVYS 356

Query: 386 QSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443
           +  H  +A + LS  ++  ++  G     +   +   S  V +      + + ++  +  
Sbjct: 357 EEGHALVATKALSRAHV--IFFIGEKWSPVLHMVQHHSCQVEFYSAPHDIEMILKDLVQQ 414

Query: 444 GDVVVVKSSNSCGFYRLIN 462
           GDVV++K S S     L+N
Sbjct: 415 GDVVLLKGSRSLALESLLN 433


>gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
 gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
          Length = 463

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 200/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL       N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 126/468 (26%), Positives = 209/468 (44%), Gaps = 19/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  DLL A      G          S DSR  AP E F A++ P  DGHD+I  A+  
Sbjct: 1   MITLDDLLAA-GARLHGPAHATSFTDWSYDSRLTAPGECFVALRTPRADGHDYIPAAIAA 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++ +     S G+    V   DD    L + A A     + T++ ITGSVGKTT +
Sbjct: 60  GATGILCSWPPADSAGTT---VLLCDDPQTTLLRWASARLAAVQPTVVDITGSVGKTTAR 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L+    T+    S+N+ +G+P+ +AR+     F + ELG  H GEI  L     
Sbjct: 117 RAAAAVLARRAATFQSRRSFNSFLGLPIAIARLEDQHRFAVLELGSDHRGEIARLATFFP 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T +  AHL +F  +E IA+ K ++   L   G   +N D      L  ++ A  
Sbjct: 177 PKIALVTAVEAAHLRSFGSLEAIAAEKGDLLAALPPKGVAIINGDSPLARALMGRTKA-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G+ ++ D   R  +   + + + ++  G  ++V    IG       L  + + 
Sbjct: 235 --HTITYGQGRSCDLSGRGLRYGLDGTLLRLRWCGTEVDVHTPLIGIPGLYAALAGVAVG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+   + AL    P  G   R R     G   L+D+S++A P +  AA+  L+ +
Sbjct: 293 LACGMDLVDCVAALPHIVPVAG---RLRPLPALGGAALLDDSFSAAPPAALAALETLAAL 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
             H   RRIAV+G + ++   S+  F+ +L    +  +   + L G   +  + A  +  
Sbjct: 350 PAH---RRIAVVGALSDLPVGSEESFYRELGTRAA-SSTDLLILKGDWGVVTERAARQIN 405

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +I V   +T +     +   L  GD+V+VK        R+I  L+++
Sbjct: 406 PNIAVQVVDTNEAALAALPPDLGPGDLVLVKGGAEARMERVIARLVDD 453


>gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi JD1]
          Length = 463

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 200/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMI--LDLNIQNKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL       N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
 gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
          Length = 493

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 180/483 (37%), Gaps = 58/483 (12%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL   ++     I   P   +  I +DSR +     F  IKG   DGHD+   AV
Sbjct: 3   MKLQELLTYFKSENNELINENPD--ITSIEMDSREVKEGSLFVCIKGYTVDGHDYAEKAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           + GA  +V        +    +PV  V     AL ++A A       K  +I ITG+ GK
Sbjct: 61  KSGAAAIVA----EHPLNITDVPVIIVKHSQRALARIADAFYEQPTHKLNLIGITGTNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR-----MPVDVDFG 163
           T+T  M+   +   +K    IG+    +              +TL +     +  DVD  
Sbjct: 117 TSTTHMIEQVMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTA 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           I E+    L   R   H     IAV T +   HL   + +EE   AK+ +F  L      
Sbjct: 177 IMEVSSHALHLGR--VHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHH 234

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K     LN DD      +  + A     + ++   + AD   +  +   + +  ++   
Sbjct: 235 NKPKHAILNADDEASSYFEKVTAA----EVMTYALEQKADVMAKNIQIMPKGTQFDLVTP 290

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             + +V    +G     N+L  + +  +     +T + A+      +G   R+       
Sbjct: 291 IGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKG---RFELVNCDQ 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            F +I + Y   P S++  ++   +++   EG+   V+G     G+  ++    +A++  
Sbjct: 348 DFPVIVD-YAHTPDSLENVLTTCRELT---EGKIFCVIGC---GGDRDKTKRPQMAQIAV 400

Query: 398 LYNISHVWLSG----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV- 449
            Y    V+ S         A+   +   +   + H          F  ++   GD V++ 
Sbjct: 401 KYADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 189/466 (40%), Gaps = 33/466 (7%)

Query: 24  QGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +  ++ +  DSRS+    +  FFA+      G  +I     +G    V+  +    I + 
Sbjct: 5   KATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENG 64

Query: 82  SIP----------------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +                          V + L AL KLA A R + K  +I ITGS GK
Sbjct: 65  ELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  KE L   LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L 
Sbjct: 125 TIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALK 184

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+       AKS
Sbjct: 185 RMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDVVIYNGDNELISNCVAKS 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +  +S    +     + +  +  + + +  +            I     +N+L  
Sbjct: 242 MLTAREIAWSRRDIERP-LYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASIENVLNC 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L     L    D   + ++   P      R      +    LI++SYN++ AS+  A+  
Sbjct: 301 LAACLYLMTPADQITERMARLEPIA---MRLEVKEGKNNCVLINDSYNSDLASLDIALDF 357

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L + S     +R  +L D+ E G+ + + +  +A+++    I+ +   G  + +      
Sbjct: 358 LVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFD 417

Query: 420 RSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  ++    + L    I  SL   +V++VK S    F  +   L
Sbjct: 418 DDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVSEEL 462


>gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi 80a]
          Length = 463

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 199/452 (44%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L     ++GR +     L +  + ++++SYN N  S  A  +++  +    + ++  
Sbjct: 318 KEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLD--IQSKKFI 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDG 432
           VLG   E+GEL+   H DL       N   ++L G   L ++D+        +Y    D 
Sbjct: 372 VLGSFKELGELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDK 431

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              F   SL     +V+K S      R++N +
Sbjct: 432 FIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 496

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 108/474 (22%), Positives = 175/474 (36%), Gaps = 47/474 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L A+    +   P   V GI+ DSR++ P + F  I G H D H FI  A+++GA  VV
Sbjct: 1   MLSALDPVQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVV 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLT 127
                    G   I    V D   AL+ L             ++ +TG+ GKTTT  ++ 
Sbjct: 61  TQRPWAVPTG---IGAAVVPDARLALSALADRFYGHPSRALRMVGVTGTNGKTTTAFLVE 117

Query: 128 IALSSIKKTYACIGSYNNHI-------------GVPLTLARMPV-----DVDFGIFELGM 169
               +  K    IG+    +               P T+ R+            + E+  
Sbjct: 118 AIARTAGKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEVS- 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH  E R   H  R  +AV T +   HL     +E   +AKA +F GL+      +N DD
Sbjct: 177 SHALEQRRTDH-CRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAAAVVNIDD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI 288
            +   L  +  A G++T  ++G S+ AD +          +   +    G++     H  
Sbjct: 236 PYGRRLAEEIPA-GVRT-LTYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAPHLF 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N +  +G    L   +  A+ AL       GR +R      Q F  ++D  Y  
Sbjct: 294 GTYNVSNAMAAVGAGLALGFSLQDAVAALGTAKGAPGRFER--IDEGQDFTVVVD--YAH 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
            P   +  +S +++I      R I V G     G+   S   D+  +   Y    V    
Sbjct: 350 TPDGFEKLLSDVARIK-EPGSRVIMVFGS---AGQRDPSKRPDMGRIAGEYCDVLVLTEE 405

Query: 407 ------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +      +   + R  + +H  E               GD+V++  K 
Sbjct: 406 DPRTEDAMEIARQIASGVARDEVEIHLIEDRVEAIREAIRMARTGDIVLITGKG 459


>gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL N1-067]
          Length = 316

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 146/323 (45%), Gaps = 9/323 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T  +++  +             + G+  D+R I P + F    G   DGH+F+  
Sbjct: 1   MNLKKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA       ++         PV  V+D L AL +LA+      +  +IAITGS GK
Sbjct: 61  AREMGAVATFWQKNVPNPPTDF--PVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+
Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P IA+IT I  AH+      +EIA AK EI  GL  +G +   Y+++        S
Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNPSGILIYPYEETLL-----LS 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G     +FGKS  ++    +    +E +      +   +E+    IG H   N +  
Sbjct: 234 QIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHP 322
           +     +  +      AL     
Sbjct: 293 MLAAREIGIEGKKIQTALKNMER 315


>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
 gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
          Length = 493

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 180/483 (37%), Gaps = 58/483 (12%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL   ++     I   P   +  I +DSR +     F  IKG   DGHD+   AV
Sbjct: 3   MKLQELLTYFKSENNELINENPD--ITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           + GA  +V        +    +PV  V     AL ++A A       K  +I ITG+ GK
Sbjct: 61  KSGATAIVA----EHPLNITEVPVIIVKHSQRALARIADAFYEQPTHKLNLIGITGTNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR-----MPVDVDFG 163
           T+T  M+   +   +K    IG+    +              +TL +     +  DVD  
Sbjct: 117 TSTTHMIEQMMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTA 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           I E+    L   R   H     IAV T +   HL   + +EE   AK+ +F  L      
Sbjct: 177 IMEVSSHALHLGR--VHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHH 234

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K     LN DD      +  + A     + ++   + AD   +  +   + +  ++   
Sbjct: 235 NKPKHAILNADDEASSYFEKVTAA----EVMTYALERKADVMAKNIQIMPKGTQFDLVTP 290

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             + +V    +G     N+L  + +  +     +T + A+      +G   R+       
Sbjct: 291 IGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKG---RFELVNCDQ 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            F +I + Y   P S++  ++   +++   EG+   V+G     G+  ++    +A++  
Sbjct: 348 DFPVIVD-YAHTPDSLENVLTTCKELT---EGKIFCVIGC---GGDRDKTKRPQMAQIAV 400

Query: 398 LYNISHVWLSG----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV- 449
            Y    V+ S         A+   +   +   + H          F  ++   GD V++ 
Sbjct: 401 KYADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Treponema denticola F0402]
          Length = 430

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/425 (24%), Positives = 176/425 (41%), Gaps = 27/425 (6%)

Query: 4   LWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L T  +LL +     +         + + +DSR++     F  ++G + DGH +I  A++
Sbjct: 14  LMTLDELLTSTGAWLVYESSSSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALK 73

Query: 63  KGAGLVVVNTDMVAS--------IGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113
            GA   VV+ D +            +       V + L AL   A     +      I I
Sbjct: 74  NGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNLYKIGI 133

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L    S    T +  G+ N+  G+PL++  +  + + GIFELGM+  G
Sbjct: 134 TGSSGKTTTKEILASIYSKKYNTVSTKGNLNSETGLPLSVFEVRPEHEAGIFELGMNRKG 193

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  ++ P+ A+IT I  AH+      + IA  K EIF   +     F+  +  F +
Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDALGFIP-ECEFTD 252

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK         ++++   + ++  Q  +              +G+ +  +    G +  
Sbjct: 253 FLKDVPRG----SVFTVSDNDSSLVQKVEDAGVLGSKIF---YRGEEI--LFPLPGVYNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L+ + +              L    P  GR +        GF T   + YNANP SM
Sbjct: 304 KNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVLH-----GFVTYFLDCYNANPDSM 358

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K+AI     I+      +  VL  M E+G  S   H  + E     N  +++  G  + +
Sbjct: 359 KSAIEFCDSINTECA--KHYVLASMLELGAKSDYEHKKIIEDALKSNADNLYFFGDDICS 416

Query: 414 LKDAL 418
             + L
Sbjct: 417 AFEGL 421


>gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL N1-067]
          Length = 491

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/481 (20%), Positives = 174/481 (36%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +    P   V+ I+ DSR +     F  I G   DGH F   A + G
Sbjct: 1   MKLNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+    +      ++IPV  V D   A+  L             ++ ITG+ GKTT 
Sbjct: 61  AVAVIAEKPI-----EVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFE 166
             ++   +    +    IG+    I              LTL       +   V   + E
Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  +NADF+    +  S  S  ++      
Sbjct: 234 KIAVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGSTFDLTTPAGK 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++    IG     N+L  +     L   ++ AI  +      +G   R+        F 
Sbjct: 290 FKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKG---RFELVNAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P  +   ++VL  I      R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YSHTPDGL---LNVLQTIDEFANNRVFVVVGC---GGDRDKGKRPQMAKIAVQYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + V+ S           +  +   +P S      E       +  S    GDV+++  K
Sbjct: 400 TNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
 gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
          Length = 463

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 201/455 (44%), Gaps = 30/455 (6%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V   S+DSR I         +FA KG   DG  F+ + +  G    + + D  +   
Sbjct: 25  EKVVAFYSLDSREINGDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      DV+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 85  EYLNDNEGLVFLLTSDVIKLLQTLASVLIERTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMELLSQILKPEIVIITNINY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGK 252
           AH+  F  ++ IA  K++I    +      +N  + +   L  +AK     +K +Y    
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEKNDYCAYLEKRAKIANPNVKIVYF--- 259

Query: 253 SKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               DF+    K  S  +         K  E     +G H   N +  + +   L     
Sbjct: 260 ----DFENLNIKSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREK 315

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L     ++GR +     L +  + ++++SYN N  S  A  +++  +  + + ++
Sbjct: 316 EIREGLIETTFQKGRAE----ILIKNGYLILNDSYNGNMGSFIALKNMI--LDLNIQNKK 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSET 429
             VLG   E+GE +   H DL +     N   ++L G   L ++  + L     ++Y   
Sbjct: 370 FIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRYSENLVEKC-LYYFSE 428

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D    F   SL     +V+K S      R++N +
Sbjct: 429 FDKFIDFFLKSLEPSVFIVIKGSRFNRLERVLNYI 463


>gi|299536847|ref|ZP_07050154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727671|gb|EFI68239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 730

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 164/370 (44%), Gaps = 15/370 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    IIAITGS GKTTTK  +   LS     +     +N           +       +
Sbjct: 369 KKTLPIIAITGSAGKTTTKAFIGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 428

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E GM++ G I     +++P+I+++T I  AH+ NF   +  +A AK+E+  G+++ G +
Sbjct: 429 LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 488

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD     L+ +        I + G  K AD++    +        +++L G+ +E+
Sbjct: 489 IVNQDDDNSRYLETQQFK---GKIITVGIKKEADYRAYDLQYKDVGMSFKMKLHGQEIEL 545

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +  +L          L+     +   +R      +   T+ID
Sbjct: 546 YIPILGEHHVYNALNAVAVADLLGFSPLDIQSGLN----FKKPPRRLTIYNCRDDITVID 601

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++ +++P  ++AA+ VL+ I+ +   R++A++G M E+G L +  +  + E +    I  
Sbjct: 602 DTVHSHPQGVRAALDVLTNIATN---RKVAIIGQMRELGVLREEEYRKVGEYVYDIGIDE 658

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               GF    + +A          VH+    D L + ++  +   D ++VK ++    + 
Sbjct: 659 FITYGFRTDEMSNAAIAKGMDPSRVHHFINKDQLHVLLEKLIKPHDTILVKGASKTNMFE 718

Query: 460 LINLLLEEFP 469
            +  L + F 
Sbjct: 719 TVKFLDQTFK 728


>gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
 gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
          Length = 464

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 198/452 (43%), Gaps = 24/452 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---- 75
           Q  V+  S+DSR I  +      +FA KG   DG  F+ + +  G    V + D      
Sbjct: 26  QKIVSFYSLDSREINAKNSSASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKDCESLCL 85

Query: 76  -ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                  ++      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 86  EYLNRDENLVFLLTSNVVILLQNLAAHFITRTSFKRIAITGSNGKTTTKEMLYSILSERY 145

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE+  L  ++ P I ++T I+ 
Sbjct: 146 KTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYIGEMNLLAEILNPEIVIVTNISY 205

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKS 253
           AH+  F  +E + + K +I    + T  + LN    +   L+  + ++     I+ F   
Sbjct: 206 AHMQAFEDLEIVTAEKGKIMT--KSTQMVILNESCPYHLHLRVMAKSINPGINIFYFDFH 263

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                Q+R +   +++ + +   +G   +      G H   N +  + +  +L    +  
Sbjct: 264 S---LQIRSFAFVNDKFFYDFTYKG--FDYSILLPGQHNIFNAISCIHLALLLGLSENEI 318

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L     ++GR +  R       + ++++SYN N  S  A   ++  +    +G++  
Sbjct: 319 RNGLLHADFQKGRAELLRVK----DYLILNDSYNGNLGSFMALKEMILGL--EIKGKKFI 372

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDG 432
           +LG   E+G+ +   H      + L N    +L G     +K     ++ ++ Y    + 
Sbjct: 373 ILGAFKELGKFAYEVHKTAIREVVLMNFDKGFLIGEEFQEVKKIENLALDNLFYFSNFEN 432

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +   +L     + +K S S    R+++ L
Sbjct: 433 FIDYFVKNLESECFIAIKGSRSNRLERILDYL 464


>gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens LL3]
          Length = 490

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 170/461 (36%), Gaps = 54/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++      + +
Sbjct: 21  DPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDV 75

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V     AL+ L+     +   +  +I ITG+ GKT+T  M+        +    IG
Sbjct: 76  PVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIG 135

Query: 142 SYNNHI---------------GVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPH 185
           +    I                +  T  +M  +  D  I E+    L   R   H     
Sbjct: 136 TMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR--VHGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           IAV T +   HL     +E+   AK+ +F  L      EK     LN DD      +  +
Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFERVT 253

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+L  
Sbjct: 254 AA----HILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      DT   AL       G   R+    +   F ++ + Y   P S++  ++ 
Sbjct: 310 AATAIAAGLPFDTITSALEELQGVRG---RFELVNHNQPFPVVVD-YAHTPDSLENVLNT 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
              ++   EG+   V+G     G+  ++    +AE+        ++ S        LA+ 
Sbjct: 366 CKDMT---EGKLFVVVGC---GGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419

Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
             + R +   Y       +    F  ++   GDVV++  K 
Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 10403S]
          Length = 491

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/481 (22%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +
Sbjct: 234 KIAVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I    + R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIDEFAKKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes Clip81459]
 gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-064]
 gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 1816]
          Length = 491

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF+    +  S  S  +++    +
Sbjct: 234 KIAVLNADDEESVRMQKATAA----HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 491

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/481 (21%), Positives = 173/481 (35%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +    P   V+ I+ DSR +     F  I G   DGH F   A + G
Sbjct: 1   MKLNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV    +      ++IPV  V D   A+  L             ++ ITG+ GKTT 
Sbjct: 61  AVAVVAEKPV-----DVTIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFE 166
             ++   +    +    IG+    I              LTL       +   V   + E
Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  +NADF+    +  S  S   +      
Sbjct: 234 KIAVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGSTFNLTTPAGK 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++    IG     N+L  +     L   ++ AI  +      +G   R+        F 
Sbjct: 290 FKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKG---RFELVNAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P  +   ++VL  I      R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YSHTPDGL---LNVLQTIDEFANKRVFVVVGC---GGDRDKGKRPQMAKIAVQYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + V+ S           +  +   +P S      E       +  S    GDV+++  K
Sbjct: 400 TNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 482

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 174/474 (36%), Gaps = 47/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                ++  +    +       +  I  DSR +   + F  IKG   DGH +I  A + G
Sbjct: 1   MKLKKVMNGLTYEVVKGNDDLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V++ ++          V  V D   AL  ++         K  II ITG+ GKTT+
Sbjct: 61  AAAIVISEEVENVPDCT---VIKVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L +       +G+  N+I              L L ++        V + + E
Sbjct: 118 TFMMKSILETAGYKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + VR   A+ T +   HL      E    AK  +F+    +    +N
Sbjct: 178 VSSHSLYLDR--AYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNTINS---VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +   +    + T  ++  +K AD +       S  +   +  +G++  +  +
Sbjct: 233 IDDKYGDKVYEDA----LGTKITYAINKEADLKANDLNIHSRGANFNITYRGQTAHINLN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G        ++   K L   +   GR +      N G+  ++D  Y
Sbjct: 289 IPGKYNVMNALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVD--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +    + +    GR IAV G   +     +     +   LS +    V  
Sbjct: 347 AHTPDGLENILKTAREFTT---GRLIAVFGCGGDRDNTKRPIMGKIGTELSDFA---VIT 400

Query: 407 S----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           S    G    A+ D +   +     + ++     I+ ++     GDV+VV  K 
Sbjct: 401 SDNPRGEEPRAIIDEIVNGVEKDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKG 454


>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 490

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/461 (20%), Positives = 170/461 (36%), Gaps = 54/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++      + +
Sbjct: 21  DPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDV 75

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V     AL+ L+     +   +  +I ITG+ GKT+T  M+        +    IG
Sbjct: 76  PVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIG 135

Query: 142 SYNNHI---------------GVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPH 185
           +    I                +  T  +M  +  +  I E+    L   R   H     
Sbjct: 136 TMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVETAIMEVSSHALSLGR--VHGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           IAV T +   HL     +E+   AK+ +F  L      EK     LN DD      +  +
Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFERVT 253

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+L  
Sbjct: 254 AA----HILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      DT   AL       G   R+    +   F ++ + Y   P S++  ++ 
Sbjct: 310 AATAIAAGLPFDTITSALEELQGVRG---RFELVNHNQPFPVVVD-YAHTPDSLENVLNT 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
              ++   EG+   V+G     G+  ++    +AE+        ++ S        LA+ 
Sbjct: 366 CKDMT---EGKLFVVVGC---GGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419

Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
             + R +   Y       +    F  ++   GDVV++  K 
Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 482

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 104/476 (21%), Positives = 181/476 (38%), Gaps = 52/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ ++ H I   P   ++G+  DSR   P+  F AIKG   DG  ++  A++ G
Sbjct: 1   MRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV + D+    G   + V  V+D   A+ K+         SK T+I ITG+ GKT+ 
Sbjct: 60  AVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL-------ARMPVDVDFGIFE 166
             ML   L         +G+  N I           P +L         +   V + + E
Sbjct: 117 TYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         IAV T ++  HL     +EE A  K+++F+  +K     +N
Sbjct: 177 VSSHSLALHR--VDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S       + ++G    A    ++ K        +VQ+Q K  E+   
Sbjct: 233 IDDKYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+  ID  Y
Sbjct: 289 IPGLFSVYNALAAITVADFLGIPLRSVREA---LSHVTVKGRFEPVETGRDFYVFID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I V G     G+  +S    + EV   Y    +  
Sbjct: 344 AHTPDGIRNIMEALKEYEA---GRKILVFGA---GGDRDKSKRPLMGEVAGKYADFCILT 397

Query: 407 SG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +++ + + +      E       +  S+    DV+++  K 
Sbjct: 398 SDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 453


>gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 452

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 121/461 (26%), Positives = 196/461 (42%), Gaps = 21/461 (4%)

Query: 9   DLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             + A+ G     +     +    IDSR       F A KG   DG+ +    +Q GA +
Sbjct: 5   QAINAMGGVLRSHVQDDQQIRNFVIDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGACM 64

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+V  + V      +     V D L AL  L      R K   IA+TGSVGKTTTKE+++
Sbjct: 65  VIVTDEDVYEQIEGNK--VLVADALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKELIS 122

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L + K+ Y   G++NN +GV +  A M +   + +FE+G +  GEI  L+  ++P I 
Sbjct: 123 EVLRTRKRVYTAYGNFNNELGVAICAANMKMGTSYSVFEMGTNSAGEIEALSKYIKPDIC 182

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T I  AH+  F GIE +A  K  I  G++K G +++   DS    +   S  L    +
Sbjct: 183 VVTGIGHAHIGRFEGIEGLAKEKLSIVSGMQKRGVLYI--ADSCRRFVT--SEVLEKTDV 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             FG    +   L    +  +  +      +        +    H   N L  + I    
Sbjct: 239 RYFGTDMASHIILGDVNRTVDGDFYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMAA 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  +K +  F PK+GRG+            +ID++YNA   S+ +A++ L+ I   
Sbjct: 299 GLSYTDVMKGIRKFQPKDGRGRIKEV----DGIKVIDDTYNAGFESVISAMTNLAGIPVE 354

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              ++ A +G+M E+    +  +  L +  S          G +         R+ ++  
Sbjct: 355 ---KKTAFIGEMGEIEGYEEMLYFKLMKKASELTNVEFVFVGKNFA----RFERTGNIKV 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +T +     I S +  G  V+ K+S    F  LI  L EE
Sbjct: 408 VQTREEAMQLI-SKVSCG-TVLFKASRGQKFEELIRHLEEE 446


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 106/466 (22%), Positives = 190/466 (40%), Gaps = 13/466 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAV 61
           ++T   + + I  H   I  + F+     DSRS+       FFAI+    DGH +I    
Sbjct: 1   MYTLQTIAEKIHAHQCAIRSEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLY 60

Query: 62  QKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             G    VV  +    +          V DV+ +L K+A   R      ++ +TGS GKT
Sbjct: 61  NHGVRSFVVKDEFDKLTQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L+   +      SYN+ +GVPL++ +M  +    IFE G+S LGE+  +  
Sbjct: 121 IVKEFLYQLLADTYRVVRSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLGEMARIEE 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P I VIT I  AH  NFS I +    K  +F G ++   I  N D+        +  
Sbjct: 181 VIKPTIGVITNIGSAHQENFSSIAQKVDEKLLLFGGCDR---IVYNMDEPEIVAGLQRLG 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L     +S  K   A   +R  +   + + +   + G    +          +N+L  +
Sbjct: 238 LLSRARGWSR-KDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENVLTCV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I+   +   I    +F   E    R           +I++ YN +  S+K A+   
Sbjct: 297 LTTIIINPSL---IDHPELFSKLEPVEMRLELIEGNKNNLIINDVYNNDINSLKIALDFQ 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q +   +   + +L ++ +     +  +  + E++  Y IS  +  G  + A ++  P 
Sbjct: 354 QQRATDADLEPVLILTEIQQSALNERPLYSRVGELIGKYRISKFYGIGKELFAYREFFPT 413

Query: 421 SI-HVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            I   ++  +++      I   L     +++K + S    R+ + L
Sbjct: 414 EIGERNFFPSVEDFLSSDIPQQL-SQACILIKGARSFHCERISDRL 458


>gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes Finland 1988]
 gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes J0161]
 gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
 gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
 gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
 gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
          Length = 491

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +
Sbjct: 234 KIAVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL S4-171]
          Length = 309

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T  +++  +             + G+  D+R I P + F    G   DGH+F+  
Sbjct: 1   MNLKKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA       ++         PV  V+D L AL +LA+      +  +IAITGS GK
Sbjct: 61  AREMGAVATFWQKNVPNPPTDF--PVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+
Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P IA+IT I  AH+      +EIA AK EI  GL  +G +   Y+++        S
Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNPSGILIYPYEETLL-----LS 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G     +FGKS  ++    +    +E +      +   +E+    IG H   N +  
Sbjct: 234 QIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAA 292

Query: 300 LGIVSILTADVDTAIKA 316
           +     +  +      A
Sbjct: 293 MLAAREIGIEGKKIQTA 309


>gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Listeria monocytogenes str. Scott A]
          Length = 494

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 4   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 64  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 179 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 236

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF+    +  S  S  +++    +
Sbjct: 237 KIAVLNADDEESVRMQKATAA----HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGN 292

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 293 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 350 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 402

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 403 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 462

Query: 451 S 451
            
Sbjct: 463 G 463


>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 484

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 179/471 (38%), Gaps = 38/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    +       ++ ++ DSR +   + F  IKG   DGH +I  A++ G
Sbjct: 1   MNLKDILKGIDYKLVQGSLDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++++  +    + + +I V  V D   AL  + +        K  II ITG+ GKTTT
Sbjct: 61  ASVIIMQDE--IEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L S  K    IG+  N+I              L L  +        V++ + E
Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V   + + T +   HL      E   ++K ++F   +++    +N
Sbjct: 179 VSSHSLELDR--VYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ + +    + L  K IY +   ++++F+    K  S+    +V L+ K  E +  
Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G    L   ++         +     G+  R A N      I   Y
Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIKNG---INKVIVPGRCERTATNYNLPYDIIIDY 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  +K  +      +   +GR IA+ G   +  ++ +     +   ++   I  S  
Sbjct: 350 AHTPDGLKNILETARGFT---QGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDN 406

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S   +  + D L      +    E              + DV+V+  K 
Sbjct: 407 PRSEEPMRIIDDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKG 457


>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 491

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF+    +  S  S  +++    +
Sbjct: 234 KIAVLNADDEESVRMQKATAA----HVITFGIKQQADFKANNIRITSHGSTFDLRTPIGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 461

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 188/466 (40%), Gaps = 24/466 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T       + G  +G   +     +++DSR +   + F A++G   DGH F+  A+ +G
Sbjct: 6   MTLGQAADLVGGILVGPDMELP-RRVALDSREVLSGDLFVALRGNRTDGHAFVGQALSRG 64

Query: 65  AGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  ++V          G        V D   AL ++A          ++ ITGSVGKTTT
Sbjct: 65  ARCLLVEISKLEEIRPGLGGASCLAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++   L    K +    SYN  IG+  T+  M    D  + E G S  GEI  L    
Sbjct: 125 REVILSLLGRRFKVHGSPKSYNTLIGLSATVMGMDRGCDNLVLEYGTSSFGEISKLVSYF 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   VIT +APAHL     ++ +  AK EI E       +  N D+     L   +   
Sbjct: 185 PPDEMVITEVAPAHLERLRDVQGVLRAKLEILESQR-GRFLSYNADND----LLWGAVTG 239

Query: 243 GIKTIYSFGKS-KNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           G  T+   G   +  D ++      W     +    +    + +EV       H A  + 
Sbjct: 240 GGLTVQRMGVGVRRGDVRISDRRIVWGDDGPRLNFNLHHGDRQLEVSSGLWPLHGAYPLA 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           ++  +      + D   +    F P +GRG+  R         L+DESYNANP SM  AI
Sbjct: 300 LSWVMALRFGVE-DLFPEVAYGFKPVKGRGRAIRSREGG---WLMDESYNANPTSMFGAI 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               +++  G  R  AVLG M EMGE S  +H  + + L+      V L G    +  D 
Sbjct: 356 DSTLELARGGSMRPQAVLGGMLEMGEDSSLWHRRIVDRLN--GFQRVILVGDRWPS--DR 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           LP    V    + +     +   L +G + +VK S        +  
Sbjct: 412 LPDW--VVPVGSFEDALE-VPMDLGEGTLTLVKGSRGYKLDLYVEA 454


>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes EGD-e]
 gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-561]
 gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
          Length = 491

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +
Sbjct: 234 KIAVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 197/466 (42%), Gaps = 15/466 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAV 61
           +++  ++L+ +   +   V    +  +S+DSRS+   E   FFA+KG ++DGHD++    
Sbjct: 10  MFSSKEILRILDCKA-CEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLY 68

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++G    VV       +       F VD+VL AL +LA   R + KA ++ ITGS GKT 
Sbjct: 69  EQGVRNFVVTGLRAGFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTI 128

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS     Y    SYN+ +GVPL+L  M V     I E G+S  GE+  L  +
Sbjct: 129 VKEWLYQLLSDEPGIYRSPRSYNSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQAM 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RP I + T +  AH  NF   ++  + KA +F    +     +  +    + + ++   
Sbjct: 189 IRPEIGIFTHLGDAHGENFESRQQKLAEKAILF----RDCRCIIGREGEALDYIASRLRP 244

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              K I+  G  KNA  ++ +    + +  + V  +  +  +          +N +  + 
Sbjct: 245 DVKKMIW--GSGKNATVRVEEKGSTAHERLVAVGYEHVAFTLSIPFPDEASFENCMNAVC 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++ +         + ++   P      R           LI++ YN++ AS + A++ L+
Sbjct: 303 VLLLEGISPVFIAERVARLQPLA---MRMEIKDGINRCVLINDYYNSDAASFQLALNTLA 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 E  ++ +L D  + G   +  + ++A +L    +S     G  +   K      
Sbjct: 360 MQDAGRE--KVVILSDFVDTGTGERELYREVALLLRKAKVSLFIGIGEKLSRYK-PYFLV 416

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               + +  D              V+++K +    F  +   L ++
Sbjct: 417 PRCRFYKDTDSFLRQENREQFKDQVILIKGARKFRFEYIAGFLQKQ 462


>gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 495

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 109/482 (22%), Positives = 190/482 (39%), Gaps = 41/482 (8%)

Query: 10  LLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +L+       G  +     + G+S D+R + P   F A+ G  +DGHD++  A +KGA  
Sbjct: 14  VLRETSAREEGPALPDDTPLAGVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARA 73

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKE 124
            +V+  + AS      P+  V D   AL  LA A    R      ++ +TG+ GKTTT+E
Sbjct: 74  ALVSRPVEASG-----PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRE 128

Query: 125 MLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +L + LS   +       ++NN IGVP TL          + E+G+   G++ +L+ ++ 
Sbjct: 129 LLCLVLSREGRRPHTNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMEYLSSVLV 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             ++++T++   HL     IE +   K+ +   +   G I L  D   F    +      
Sbjct: 189 SDVSIVTSVGEGHLETLGSIEGVWKEKSNLLNWVRPGGGIVLPLD-LLFRYPASPVFRER 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWM---------------EVQLQGKSMEVVHHGI 288
            +  +      +     R  +   E S +                     +S        
Sbjct: 248 QRRFFFVALDPDPGDSARASRSVPEGSTILSGTLRKEEGGTWILSGTTGPESFSWSMPSP 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +A + L+ L   + L   +    K L  F P  GR +  R         L+ + YN+
Sbjct: 308 SSILAMDALLALAAGNALGVSLSEGAKHLEKFAPLPGRMQEKRTPE---GALLLLDHYNS 364

Query: 349 NPASMKAAISVL-------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           NP S++ A           + ++  G G+ +AVLGDM E+GE S   H     + +    
Sbjct: 365 NPLSLQGAFQWCTEVWKKEASLAGGGPGKLLAVLGDMLELGEDSSRLHRKAGLIAAETPF 424

Query: 402 SHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           S ++  G      ++        +  +            +  +L  GDVV+VK S     
Sbjct: 425 SAIFYKGDFFQDFREGYLSGKGEAARLTRLSGPPYSGQGVFPALRRGDVVLVKGSRGMHL 484

Query: 458 YR 459
            +
Sbjct: 485 EQ 486


>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 484

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 180/471 (38%), Gaps = 38/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    +       ++ ++ DSR +   + F  IKG   DGH +I  A++ G
Sbjct: 1   MNLKDILKGIDYKLVQGSLDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++++  D    + + +I V  V D   AL  + +        K  II ITG+ GKTTT
Sbjct: 61  ASVIIMQDD--IEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L S  K    IG+  N+I              L L  +        V++ + E
Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V   + + T +   HL      E   ++K ++F   +++    +N
Sbjct: 179 VSSHSLELDR--VYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ + +    + L  K IY +   ++++F+    K  S+    +V L+ K  E +  
Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G    L   ++         +     G+  R A N      I   Y
Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAI---REGINKVIVPGRCERTATNYNLPYDIIIDY 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  +      +   +GR IA+ G   +  ++ +     +   ++   I  S  
Sbjct: 350 AHTPDGLQNILETARGFT---QGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDN 406

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S   +  ++D L      +    E              + DV+V+  K 
Sbjct: 407 PRSEEPMKIIEDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKG 457


>gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
 gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
          Length = 463

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 200/455 (43%), Gaps = 30/455 (6%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA +G   DG  F+ + +  G    +   +  +   
Sbjct: 25  EKVVSFYSLDSREIKDDNINVSLYFAYRGNKVDGFSFVKYLIDLGVKCFICAREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      DV+  L  LA     R+    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSDVIKLLQTLASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++  FE+G S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAGFEVGGSYIGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGK 252
           AH+  F  ++ IA  K++I    +       N  + +   L  +AK     +K +Y    
Sbjct: 205 AHMQAFKELQSIAFEKSKIIG--KNIEIFVTNEMNDYCIYLEKRAKIANPNVKIVYF--- 259

Query: 253 SKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               DF+    K  S  +         K  E     +G H   N +  + +   L     
Sbjct: 260 ----DFESLNIKSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREK 315

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L     ++GR +     L +  + ++++SYN N  S  A  +++  +    +G++
Sbjct: 316 EIREGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFIALKNMILDLD--IQGKK 369

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSET 429
             VLG   E+GE +   H DL +     N   ++L G   L ++  + L     ++Y   
Sbjct: 370 FMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEK-RLYYFSE 428

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            D    F  +SL     +V+K S      R++N +
Sbjct: 429 FDKFIDFFLNSLEPSVFIVIKGSRFNRLERILNYI 463


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 103/470 (21%), Positives = 205/470 (43%), Gaps = 19/470 (4%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFI 57
           M+ L +    +   +   +  +     ++ + IDSRS+       FFA+KG   DGH F+
Sbjct: 1   MSSLIYNIKHIAGILGIKNFEVQKDAIISKLVIDSRSVIDPDGSLFFALKGQR-DGHGFL 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A   G    V++      +   +  +  V DVL AL+ +A   R +    ++ ITGS 
Sbjct: 60  KDAYANGIRNFVISEAKYTRLFPDAN-ILLVQDVLLALHTIAKYNRNQYDLKVLGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   L++         S+N+ IGVPL++  +      GIFE G+S   E+  
Sbjct: 119 GKTIVKEWLYQLLAADHNIVRSPKSFNSQIGVPLSVWEITAIHTLGIFEAGISKTDEMDA 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P++ ++T +  AH   F  ++E    K ++F        +F+ Y   +   L  
Sbjct: 179 LASMIKPNVGILTNVGEAHAEGFVSLKEKLLEKLKLFN----DADLFI-YAPEYTAGLS- 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  L  KT +S+ K + AD Q+   +    ++++    +G  +E +         +N +
Sbjct: 233 -TDDLPGKTKFSWSKKQQADLQILFVEPIDGKNYIRADFKGIEIECLIPFSDQASVENGI 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    +  L    + A K L           R          ++ID+SY+A+ +S+  A+
Sbjct: 292 ICWATLLALGYTPEEADKRLEKLTRVS---MRLELKNGINQCSVIDDSYSADISSLAIAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+  + H   ++  +L D+ E G+ ++  + ++A +L   ++  +   G H+      
Sbjct: 349 DFLNLQNQHP--KKTLILSDIYETGKTNRVLYTEIAALLKQKHVDRLIGIGTHISESASL 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +   + E+         +   + + ++VK +    F R+  L+ ++
Sbjct: 407 F--DMEASFYESTQAFIDNFPALHFNNETILVKGARRFEFERISKLIAQK 454


>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
 gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
          Length = 491

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 174/481 (36%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI   +        VN I+ DSR + P   F  I G   DGH F   A + G
Sbjct: 1   MKLSELMQAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++    +      ++IPV  V D   A+  L             ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKTV-----DVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFE 166
             ++   +    +    IG+    I              LTL       +   V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG    ADF+    +  S  S  ++   G  
Sbjct: 234 KIAVLNADDEESVRMQTATAA----HVITFGIKAAADFRASNIQITSHGSTFDLDTPGGH 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++    IG     N+L  +     L   +D AI  +      +G   R+        F 
Sbjct: 290 FKLKIKMIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKG---RFELVHAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P  +   ++VL  IS   E R   V+G     G+  +     +A+V   Y 
Sbjct: 347 VIVD-YSHTPDGL---LNVLQTISEFAEKRVFVVVGC---GGDRDKGKRPQMAKVAVKYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + V+ S           +  +   +P +      E       +  S    GDV+++  K
Sbjct: 400 TNPVFTSDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 100/469 (21%), Positives = 200/469 (42%), Gaps = 21/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   + + I            ++ + IDSRS+       FFA+     DGH++I  A  
Sbjct: 6   YTIRRISEIIHARPSVTNESLIISRLVIDSRSMIDPENSLFFALSAKR-DGHEYIPDAYA 64

Query: 63  KGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            G    V++         +          VDDVL AL +LAV  R +    ++AITGS G
Sbjct: 65  HGIRNFVISRTEFLADQKAGDYADANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L++         S+N+ IGVPL++  +  +    IFE G+S   E+  L
Sbjct: 125 KTIVKEWLYQLLAADFNIVRSPRSFNSQIGVPLSVWDLTEEHTLAIFEAGISKGEEMDAL 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++ P + ++T +  AH   FS  +E    K ++F+  +        Y   + + +  K
Sbjct: 185 AAIIYPTVGILTNVGEAHAEGFSSQKEKLLEKLKLFKEAD-----VFIYSPEYTQGIPKK 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              L   T +S+  +++AD Q+   +   +++++    +G+ +E +         +N ++
Sbjct: 240 --DLPGNTKFSWSLTESADLQISFIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGII 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +  +    + A    S        G R          ++ID+SY+A+ +S+  A+ 
Sbjct: 298 CWATLLSMGYSPEDA---DSRLEKLNRVGMRLELKHGINQCSVIDDSYSADISSLAIALD 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+  + H   ++  +L D+ E G   +  + ++A +L    I+ +   G ++ A     
Sbjct: 355 FLNLQNQHP--KKTLILSDLYETGRKDEELYTEIAALLKQKQINRLIGVGPNISASASQF 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +   +  +         +   + + +++K +    F R+  L+ ++
Sbjct: 413 K--LESSFYSSTQDFIDQFPAIHFNDETILLKGARRFEFERISKLITQK 459


>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
 gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
          Length = 491

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF+    +  S  S  +++    +
Sbjct: 234 KIAVLNADDEESVRMQKATAA----HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GD++++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 105/458 (22%), Positives = 185/458 (40%), Gaps = 33/458 (7%)

Query: 32  IDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----- 84
            DSRS+    +  FFA+      G  +I     +G    V+  +    I +  +      
Sbjct: 3   TDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSG 62

Query: 85  -----------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                               V + L AL KLA A R + K  +I ITGS GKT  KE L 
Sbjct: 63  QDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLH 122

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I 
Sbjct: 123 QLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIG 182

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++T I  AH  NF  ++E    K  +F   +    +  N D+       AKS     +  
Sbjct: 183 ILTNIGGAHQENFFSLQEKCMEKLTLF---KDCDVVIYNGDNELISNCVAKSMLTAREIA 239

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S    +     + +  +  + + +  +            I     +N+L  L     L 
Sbjct: 240 WSRRDIERP-LYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLM 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D   + ++   P      R      +    LI++SYN++ AS+  A+  L + S   
Sbjct: 299 TPADQITERMARLEPIA---MRLEVKEGKNNCVLINDSYNSDLASLDIALDFLVRRSEKK 355

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             +R  +L D+ E G+ + + +  +A+++    I+ +   G  + +        +  ++ 
Sbjct: 356 GLKRTLILSDILETGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFDDDLERYFF 415

Query: 428 ETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              + L    I  SL   +V++VK S    F  +   L
Sbjct: 416 PNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVSEEL 452


>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-003]
          Length = 491

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +
Sbjct: 234 KIAVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/445 (22%), Positives = 178/445 (40%), Gaps = 31/445 (6%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----------------- 85
           FFA+      G  +I     +G    V+  +    + +  + V                 
Sbjct: 17  FFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQL 76

Query: 86  -----FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                  V + L AL KLA   R + K  +I ITGS GKT  KE L   LS  +      
Sbjct: 77  STLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSP 136

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF
Sbjct: 137 RSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENF 196

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             ++E    K  +F   +    +  N D+       AKS     +  +S    +     +
Sbjct: 197 FSLQEKCMEKLTLF---KDCDVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERP-LYI 252

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +  + + +  +            I     +N L  L     L    D   + ++  
Sbjct: 253 SRVTKKEDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARL 312

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P      R      +    LI++SYN++ AS+  A+  L + S     +R  +L D+ E
Sbjct: 313 EPIA---MRLEVKEGKNNCVLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FIQS 439
            G+ + + +  +A+++    I+ +   G  + +        +  ++    + L    I  
Sbjct: 370 TGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFNDDLERYFFPNTEALLASNILK 429

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
           SL   +V++VK S    F  +   L
Sbjct: 430 SLHS-EVILVKGSRVFNFDLVSEAL 453


>gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 488

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 183/477 (38%), Gaps = 53/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +   ++       V GI  DSR+      F AIKG  +DG D+I  AV++G
Sbjct: 1   MRLVDILKDVNYTTVKGNIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +VV  ++        I V  V++   +L K+A         +  +I +TG+ GKT+ 
Sbjct: 61  AVAIVVEREVSI---DKDITVIKVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSV 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVD--VDFGIFE 166
             M+   L S       IG+ +N IG  +                 R+ VD  V + + E
Sbjct: 118 TYMIKSILESQNNKVGLIGTIHNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R      +  IAV T +   HL     ++E A+AKA++F   +      +N
Sbjct: 178 VSSHSLALNR--VDECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLFRMAKT--ACVIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   +   S+A     + ++G    A    +  K   + +   VQ++    E+   
Sbjct: 234 IDDDYSSYMIENSNA----KVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALK 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +  IL   + +   A       + +G+     L+  +  +ID  Y
Sbjct: 290 IPGLFSVYNSLAAISVAFILGIPLQSVKMA---LKDVKIKGRFEVLDLDVPYNVVID--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +    +   +  G++I + G     G+  +     + EV   Y    V +
Sbjct: 345 AHTPDGLENLMKAFGE---YNTGKKILLFGC---GGDRDKGKRPKMGEVAGKY-ADFVII 397

Query: 407 SGFH---------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +  +++ +          E       +  S   D DVV++  K 
Sbjct: 398 TSDNPRSEEPIKIIQEIEEGIKNTKCPYTIIEDRKEAIKYALSIAKDNDVVILAGKG 454


>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens FZB42]
 gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
          Length = 490

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 170/461 (36%), Gaps = 54/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++      + +
Sbjct: 21  DPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDV 75

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V     AL+ L+     +   +  +I ITG+ GKT+T  M+        +    IG
Sbjct: 76  PVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIG 135

Query: 142 SYNNHI---------------GVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPH 185
           +    I                +  T  +M  +  D  I E+    L   R   H     
Sbjct: 136 TMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR--VHGCDYD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           IAV T +   HL     +E+   AK+ +F  L      EK     LN DD      +  +
Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFEKVT 253

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+L  
Sbjct: 254 AA----HILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      DT   AL       G   R+    +   F ++ + Y   P S++  ++ 
Sbjct: 310 AATGIAAGLPFDTITSALEELQGVRG---RFELVNHNQPFPVVVD-YAHTPDSLENVLNT 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
              ++   EG+   V+G     G+  ++    +AE+        ++ S        LA+ 
Sbjct: 366 CKDMT---EGKLFVVVGC---GGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419

Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
             + R +   Y       +    F  ++   GDVV++  K 
Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|126650748|ref|ZP_01722964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592413|gb|EAZ86431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 744

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 159/365 (43%), Gaps = 15/365 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    IIAITGS GKTTTK  +   LS     +     +N           +       +
Sbjct: 383 KKNLPIIAITGSAGKTTTKAFVGSILSKQWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 442

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E GM++ G I     +++P+I+++T I  AH+ NF   +  +A AK+E+  G+++ G +
Sbjct: 443 LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 502

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD     L+ +        + + G   +AD++    +        +++L G+ +E+
Sbjct: 503 ILNKDDDNSRFLETQQFK---GKMLTVGIKSDADYRAYDLQYKDIGMSFKMKLHGQEIEL 559

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +   L          L+   P     +R      +   T+ID
Sbjct: 560 YIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPP----RRLTIYNLRDDITVID 615

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++ +++P  ++AAI VL+ I+   + R++A++G M E+G L +  +  + E +    I  
Sbjct: 616 DTVHSHPQGVRAAIDVLTNIA---KKRKVAIIGQMRELGVLREEEYRKVGEYIYEEGIDE 672

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               GF    + +A          VH+    D L   +   +   D ++VK ++    + 
Sbjct: 673 FITYGFRTDEMSNAAIEMGMDPSRVHHFINKDALHALLDKLIKPHDTILVKGASKTNMFE 732

Query: 460 LINLL 464
            +  L
Sbjct: 733 TVKYL 737


>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
 gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
          Length = 480

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 180/462 (38%), Gaps = 45/462 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P   + G+S DSR++ P   +F + G   DGHDFI  A++ GA  +V + +++ 
Sbjct: 5   KLFKNAPTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKELLN 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                      V+DV  A+NK+A    A+   K  +  +TG+ GK+T   ++   ++   
Sbjct: 65  MASGAV--YIRVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMINDKT 122

Query: 135 KT--YACIGSYNNHIGVPLTLARMPV-------------DVDFGIFELGMSHLGEIRFLT 179
                  I      I +   L                   +     E+    L + R   
Sbjct: 123 PCGYIGTIAIKYGDIELQPNLTTPDALFLQSKLADMVRVGMKACALEVSSHGLAQHR--V 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAK 238
             +    A+ T +   HL     +E    AK+ +F+ L ++ G   LN DD  +E LK  
Sbjct: 181 DGISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDEKYEALKDC 240

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S A     + S+G +K AD++    K  S+ +  ++   G    +  + +G     N+L 
Sbjct: 241 SKA----RVVSYGINKEADYRAINIKMSSQGTQFDLVYSGHMYPIKTNLVGNFNVYNLLA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  ++    D+D  I+  S     EGR +R  C   Q +  ++D  +   P  M+  + 
Sbjct: 297 AVSALNETGYDLDKIIEKCSHIAQVEGRMERIDC--GQPYNVIVD--FAHTPDGMEKMMQ 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
               I+     R IAV G     G+          E+   Y   ++ ++           
Sbjct: 353 FGRSITM-PGHRLIAVFGS---AGKRDVHKRKVFGELADKY-CDYIIVTEDDPRDEDPKE 407

Query: 414 LKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + D +   I    HV   +  + +   I SS  +GD V++  
Sbjct: 408 IADQIKSGIQNTLHVFVQDRYEAIHQAI-SSAQEGDTVLLLG 448


>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 484

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/471 (20%), Positives = 180/471 (38%), Gaps = 38/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    +       ++ I+ DSR +   + F  IKG   DGH +I  A++ G
Sbjct: 1   MNLKDILKGIDYKLVQGSLDKEISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++++  D    + + +I V  V D   AL  + +        K  II ITG+ GKTTT
Sbjct: 61  ASVIIMQDD--IEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L S  K    IG+  N+I              L L  +        V++ + E
Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V   + + T +   HL      E   ++K ++F   +++    +N
Sbjct: 179 VSSHSLELDR--VYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ + +    + L  K IY +   ++++F+    K  S+    +V L+ K  E +  
Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G    L   ++         +     G+  R A N      I   Y
Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIKNG---INKVIVPGRCERTATNYNLPYDIIIDY 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  +      +   +GR IA+ G   +  ++ +     +   ++   I  S  
Sbjct: 350 AHTPDGLQNILETARGFT---QGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDN 406

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S   +  ++D L      +    E              + DV+V+  K 
Sbjct: 407 PRSEEPMRIIEDILVGIEKDNYEIIENRKDAIKKAMDIAKENDVIVIAGKG 457


>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
 gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
          Length = 491

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 182/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF+    +  S  S  +++    +
Sbjct: 234 KIAVLNADDEESVRMQKATAA----HVITFGIKQQADFKASNIRITSHGSAFDLRTPIGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S      +  A+ +     +P S      E       F  +    GD++++  K
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
 gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
          Length = 438

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/458 (24%), Positives = 191/458 (41%), Gaps = 44/458 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +A+ G        G V  +   S +  P   F A+ G    G  FI  A+ +GA
Sbjct: 18  TPEWVARAVGGRLHPGG--GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGA 75

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+ +    A+          V+D   AL +L  A R      ++A+ GS GKTTTKE 
Sbjct: 76  SLVLADQAGPAT--------LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEA 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L       A  G+ N    +      +       + ELG+   GE+  L  L +PH
Sbjct: 128 LAQGLGL----PAPPGNLNTAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPH 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL  F  +E+    +A +                +      A       +
Sbjct: 184 LAVLTALGEEHLEAFGTLEKAVQEEAHLLRAPT-----------ALVGEQAAPLVLGLRE 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  +G ++   F+ R  +    +S    +  G  + V + G+G   A   L  L    +
Sbjct: 233 DLLVYGFAEG-TFRGRDLELGLRESRF--RYGGLHVRVPYPGLG--PAYGALAALAAAEV 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++   + LS      GR +        G    ++++YNANP S+KA +  L+    
Sbjct: 288 LGLSLEEVAERLSRLTLPPGRMETREV----GGVVFVNDAYNANPLSVKAGLRWLAAQP- 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GR+ AVLG+M E+G  S   H+++AE  +   +S ++L G H          +    
Sbjct: 343 ---GRKWAVLGEMRELGRESLRLHLEVAEEAARLGLSPLYL-GPHARHQA-----AFSGE 393

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             E+++    ++++ +  GD+V +K+S + G  R++ L
Sbjct: 394 AVESLEEALAWLKARVAPGDLVYLKASRAVGLERIVEL 431


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 180/463 (38%), Gaps = 12/463 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I   +   +    V+ +  DSR +    +  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAKT-NQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF    +    K  +F   E    I  + DD F       S  L  
Sbjct: 184 TIGIITNIGEAHQENFLSSNQKCMEKLTLFNDCEA---IIYDGDDLFIANCIE-SACLSH 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K I        A   +    +   ++ +   L G +  V          +N++  + ++ 
Sbjct: 240 KAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVML 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 300 YLK---PTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVF--EIEK 414

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +             +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKFKDELILIKGSRHFHFEQISELLEKK 457


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 180/463 (38%), Gaps = 12/463 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I   +   +    V+ +  DSR +    +  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAKT-NQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF    +    K  +F   E    I  + DD F       S  L  
Sbjct: 184 TIGIITNIGEAHQENFLSSNQKCMEKLTLFNDCEA---IIYDGDDLFIANCIE-SACLSH 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K I        A   +    +   ++ +   L G +  V          +N++  + ++ 
Sbjct: 240 KAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVML 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 300 YLK---PTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVF--EIEK 414

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +             +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKFKDELILIKGSRHFHFEQISELLEKK 457


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 180/463 (38%), Gaps = 12/463 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I   +   +    V+ +  DSR +    +  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAKT-NQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF    +    K  +F   E    I  + DD F       S  L  
Sbjct: 184 TIGIITNIGEAHQENFLSSNQKCMEKLTLFNDCEA---IIYDGDDLFIANCIE-SACLSH 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K I        A   +    +   ++ +   L G +  V          +N++  + ++ 
Sbjct: 240 KAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVML 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 300 YLK---PTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVF--EIEK 414

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +             +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKFKDELILIKGSRHFHFEQISELLEKK 457


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 180/463 (38%), Gaps = 12/463 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I   +   +    V+ +  DSR +    Q  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAKT-NQLLDDTVSLLLTDSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF    +    K  +F   E    I  + DD F       S  L  
Sbjct: 184 TIGIITNIGEAHQENFLSSNQKCMEKLTLFNDCEA---IIYDGDDLFIANCIE-SACLSH 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K I        A   +    +   ++ +   L G +  V          +N++  + ++ 
Sbjct: 240 KAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVML 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 300 YLK---PTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIVGIGRDLKEYASVF--EIEK 414

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +             +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKFKDELILIKGSRHFHFEQISELLEKK 457


>gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 198/437 (45%), Gaps = 27/437 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             I IDSR ++  + F  +KG   DG+DF+  A+ KGA LV  +             V  
Sbjct: 17  RNIVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFDDQR------VLR 70

Query: 88  VDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           VDD    L + A +   +SK    I ITGS GKTTTKE+ +  LS + + +   G+ N  
Sbjct: 71  VDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGNLNTE 130

Query: 147 IGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           IG+PL+L     +     +G+FE G S  G+I  L  +V+P IAV+  +  AH+ NF  I
Sbjct: 131 IGLPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVLLNVGSAHVGNFKDI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +E+   K  IF+  ++     L   D   E L+  S  L ++ +  FGK ++ DF +  +
Sbjct: 191 DELLQEKLSIFKS-KRLSRAVLGGCD---ERLREFSKGLPVE-VLLFGK-EDVDFSIVDF 244

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 + +     G     +     Y    ++     +  ++  +  +           
Sbjct: 245 AYDKGDTMLHFFCDGDRFVRLRGIWSYGQLLDLGAAYLVARLVGVEEPSVFLNDYKL--- 301

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R+  ++ +G  T+I + YN++  S ++AI  + ++      R+IAV G + E G 
Sbjct: 302 -PFSDRFTVSILKG-ITVISDFYNSSLESWESAILSIEKLRSS---RKIAVAGSILEQGR 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             +  H  L E+LS ++ + ++      +A+  A         S++ + +  ++  ++  
Sbjct: 357 EEKRTHERLGELLSKFDETVLFT---RDMAINAASKNVKPALVSDSEEEIAAWLHRNVRS 413

Query: 444 GDVVVVKSSNSCGFYRL 460
           GD+V  K+S +     +
Sbjct: 414 GDLVFFKASRAIALEGV 430


>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
 gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
          Length = 496

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 167/484 (34%), Gaps = 59/484 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++ +    +       +  ++ DSR++     F A+ G   DGH+++  A++ GA 
Sbjct: 6   LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            V+V+  +  S     + V  V+D   A+            +   +I +TG+ GKTTT  
Sbjct: 66  AVLVSKPVDVSGD---VCVITVEDTRAAMMVCVPYFFDYPANSMRMIGVTGTNGKTTTSH 122

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFELG 168
           M+   L +       IG+ +  I                +   L +M  + V + + E+ 
Sbjct: 123 MIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TGT 222
              L   R     V    AV T +   HL      E   +AK ++FE + K         
Sbjct: 183 SHALALGR--VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKG 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD++   +  K+ A     I ++    +            + S   V   G    
Sbjct: 241 AVINIDDAYGHRVVEKTTA----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYT 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G     N L  +G   +    ++   KAL  F    G   R+        F ++
Sbjct: 297 VAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPG---RFELIEEGQPFAVV 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y   
Sbjct: 354 VD-YAHTPDGLENILQTAKAIQEN---RIIVVFGC---GGDRDATKRPIMGRIAAQYG-D 405

Query: 403 HVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+++  +                +KD L    H                +   GD+V++
Sbjct: 406 VVYVTSDNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLI 465

Query: 450 --KS 451
             K 
Sbjct: 466 AGKG 469


>gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
 gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
          Length = 438

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 191/458 (41%), Gaps = 44/458 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +A+ G        G V  +   S +  P   F A+ G    G  FI  A+ +GA
Sbjct: 18  TPEWVARAVGGRLHPGG--GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGA 75

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+ +    A+          V+D   AL +L  A R      ++A+ GS GKTTTKE 
Sbjct: 76  SLVLADQAGPAT--------LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEA 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L       A  G+ N    +      +       + ELG+   GE+  L  L +PH
Sbjct: 128 LAQGLGL----PAPPGNLNTAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPH 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL  F  +E+    +A +                +      A       +
Sbjct: 184 LAVLTALGEEHLEAFGTLEKAVQEEAHLLRAPT-----------ALVGEQAAPLVLGLRE 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  +G ++   F+ R  +    +S    +  G  + V + G+G   A   L  L    +
Sbjct: 233 DLLVYGFAEG-TFRGRDLELGLRESRF--RYGGLHVRVPYPGLG--PAYGALAALAAAEV 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++   + L+      GR +        G    ++++YNANP S+KA +  L+    
Sbjct: 288 LGLSLEEVAERLARLTLPPGRMETREV----GGVVFVNDAYNANPLSVKAGLRWLAAQP- 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GR+ AVLG+M E+G  S   H+++AE  +   +S ++L G H          +    
Sbjct: 343 ---GRKWAVLGEMRELGRESLRLHLEVAEEAARLGLSPLYL-GPHARHQA-----AFSGE 393

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             E+++    ++++ +  GD+V +K+S + G  R++ L
Sbjct: 394 AVESLEEALAWLKARVAPGDLVYLKASRAVGLERIVEL 431


>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 491

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 99/481 (20%), Positives = 179/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++AI  ++        ++ I+ DSR + P   F  I G   DGH F   A + G
Sbjct: 1   MKLSELMEAIPVYTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +++PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKTV-----DVTVPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLAR-----MPVDVDFGIFE 166
             ++   +    +    IG+    IG             LTL       +   V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD+    ++  + A     + +FG  K ADF+    K  S  S  +++    +
Sbjct: 234 KVAVINIDDAESSRMQTATAA----HVITFGIKKQADFRASNIKIASHGSTFDLRTPVGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AI  +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALKIPINNAIATVEDIPGVKG---RFELVSAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P S+   ++VL  I    E R   ++G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YSHTPDSL---LNVLQTIDEFAEKRVFVIVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S           +  +   +P S      E       F  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria monocytogenes L99]
          Length = 491

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 180/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++      
Sbjct: 234 KMAVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGE 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    IG     N+L  +     L   ++ AI  L      +G   R+        F 
Sbjct: 290 FTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKG---RFELVNAGQAFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y+
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYS 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S           +  +   +P S      E       F  +    GDV+++  K
Sbjct: 400 SNPIFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|215403547|ref|ZP_03415728.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 02_1987]
 gi|289745432|ref|ZP_06504810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
 gi|289685960|gb|EFD53448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
          Length = 463

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 81  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 140

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 141 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 200

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 201 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 256

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 257 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 314

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 315 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 374

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 375 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 434

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 435 VLVKASNAAGLGAVADALVAD 455


>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 501

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 105/479 (21%), Positives = 178/479 (37%), Gaps = 45/479 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +  H++   PQ  ++ +  DSR I P   + A+KG   DGH+FI  A+++G
Sbjct: 1   MKLLTLLKDLPSHTLTGSPQVKISHLECDSRRILPGSCYIALKGTRADGHEFIPEAIRRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VV             +    V+D   A++ +  A   R     T+I +TG+ GKTTT
Sbjct: 61  ACAVVAEMPCTQEAREAGVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMIGVTGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFEL 167
             +    L         IG+     G  +T               L  M  +   G+   
Sbjct: 121 AYIAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEMYENGCRGVSME 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTG 221
             SH  +   +  +   ++ + T +   HL     +E    AKA++FE +       +  
Sbjct: 181 VSSHALDQERVAGI-NFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQMAQDTKSRRKP 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD++   L       G  T+ ++G +  ADF++      ++ S  E++ +GKS 
Sbjct: 240 VAVINIDDAYGRRLAEMF--SGRMTVKTYGSALGADFRMLVHHATAKGSEYELEYKGKSY 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    IG     N L  L  V      V  AI  L       G   R     + G   +
Sbjct: 298 LVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPG---RLELFTHPGGAQI 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             + Y   P +++     L ++      R I V G   +     +      A  LS   I
Sbjct: 355 FID-YAHTPDALENVCKTLKEL---CSRRLITVFGCGGDRDRGKRPLMGAAAARLSDACI 410

Query: 402 -------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  S   LS   +  +   +P   +    +    +   I+ +   GD+V++  K 
Sbjct: 411 VTSDNPRSEEPLS--IISQIAAGMPEGRYAIIPDRARAIATAIEQA-RLGDIVLIAGKG 466


>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
 gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
          Length = 491

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 179/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++      
Sbjct: 234 KMAVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGE 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    IG     N+L  +     L   ++ AI  L      +G   R+        F 
Sbjct: 290 FTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKG---RFELVNAGQAFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I+   E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIAEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S           +  +   +P S      E       F  +    GDV+++  K
Sbjct: 400 SNPIFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
 gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
          Length = 498

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 172/484 (35%), Gaps = 52/484 (10%)

Query: 4   LWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L + I+G ++I       + GIS DSR I     F  I G H DG  F   AV+
Sbjct: 1   MKTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
           KGA  V+ N  +   +    I    V D+  AL  +          K  +I +TG+ GKT
Sbjct: 61  KGAVAVLTNKHLDLPLE---ITQITVPDIHAALEDIVPYFYDYPGKKMRMIGVTGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFGI 164
           TT  ++   L         IG+ +  I                   L        +D+ +
Sbjct: 118 TTSHIIAHILREAGYHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEGMDYVV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------E 218
            E+    L   R     +    AV T +   HL      E   +AKA++F GL      +
Sbjct: 178 MEVSSHALALNR--VAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPVK 235

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K  T  +N DD   + +   +       + ++G  K+AD +    +   + S  +V    
Sbjct: 236 KNKTAVINIDDPHADEILKATSC----KVLTYGVEKDADLKGSNLQVGLKSSSFDVVGPF 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S+ +  H  G     N L  +G       D D   KA+  F+   G   R+        
Sbjct: 292 VSVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPG---RFELVEAGQD 348

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F ++ + Y+  P S++ A++    + P+   R I V G   +     +     +A   + 
Sbjct: 349 FAIVVD-YSHTPDSLEKALTTARAMKPN---RIITVFGCGGDRDRTKRPIMGGIAAQYAD 404

Query: 399 YNI---------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             I            ++       ++ AL                         GD+V++
Sbjct: 405 IPIVTSDNPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGDIVLI 464

Query: 450 --KS 451
             K 
Sbjct: 465 AGKG 468


>gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
 gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
          Length = 435

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 53  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 112

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 113 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 172

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 173 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 228

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 229 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 286

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 287 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 346

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 347 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 406

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 407 VLVKASNAAGLGAVADALVAD 427


>gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis H37Ra]
          Length = 445

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 63  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 122

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 123 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 182

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 183 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 238

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 239 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 296

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 297 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 356

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 357 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 416

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 417 VLVKASNAAGLGAVADALVAD 437


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 199/468 (42%), Gaps = 13/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           ++ F +L + +   ++ IV    +  +  DSR+++      FFA++    DGH +I    
Sbjct: 1   MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            KG    V++      +  +    +  V   L AL ++A   R      +I ITGS GKT
Sbjct: 61  DKGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L    +      SYN+ IGVPL++ +M  +   GIFE G+S +GE+  L  
Sbjct: 121 IVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLES 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++ P   +IT I  AH  NF  I+     K  +F       TI  N D    E+  A S 
Sbjct: 181 IICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF---PHCHTIVYNGDCE--EIAAAISF 235

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   S+ ++K  A   + + +    ++ ++ +  GK   +V         ++++  
Sbjct: 236 CGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDIIHC 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++S+L  +V +A K  +   P E    R          T+I++ Y+ +  S+  A+  
Sbjct: 296 ITLISVLCPEVLSARKRFASLEPVE---MRMEVKAGDHGNTIINDVYSNDVYSLTLALDF 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             + +     +++ +L D+ + G   +  +  +A  L +Y +      G  + + +    
Sbjct: 353 QRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFA 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   + + +       +        +++K +    F ++   L+++
Sbjct: 413 -GMSAVFFKDVAAFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQ 459


>gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
 gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
          Length = 432

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 50  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 109

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 110 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 169

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 170 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 225

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 226 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 283

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 284 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 343

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 344 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 403

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 404 VLVKASNAAGLGAVADALVAD 424


>gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis CDC1551A]
          Length = 431

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 49  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 108

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 109 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 168

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 169 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 224

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 225 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 282

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 283 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 342

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 343 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 402

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 403 VLVKASNAAGLGAVADALVAD 423


>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
 gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
          Length = 488

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 164/470 (34%), Gaps = 54/470 (11%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
              S        +  I +DSR +     F  IKG   DGHD+   A +KGA  +V   ++
Sbjct: 12  NAPSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREV 71

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                   +PV  +     AL  L+     +   +  +I ITG+ GKT+T  M+      
Sbjct: 72  -----DADVPVIIIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRK 126

Query: 133 IKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIR 176
                  IG+    I      A+                +   VD  + E+    L   R
Sbjct: 127 AGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR 186

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDS 230
              H     IA  T +   HL     +EE   AK+ +F  L      E      LN DD 
Sbjct: 187 --VHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDP 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                   + A     + ++G   +AD      K   + +  ++     S +V    +G 
Sbjct: 245 ASAYFAQVTSA----HLLTYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGL 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L    I         T  + +       G   R+        F +I + Y   P
Sbjct: 301 FNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRG---RFELVDAGQDFPVIVD-YAHTP 356

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            S++  ++    ++   EG+   V+G     G+  ++    +A++        V+ +   
Sbjct: 357 DSLENVLNTCRGLT---EGKLFVVVGC---GGDRDKTKRPKMAKIAVDLADEPVFTADNP 410

Query: 409 --FHVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVV--KS 451
              + LA+ + +   +   Y  ++   +    F  ++   GDVV++  K 
Sbjct: 411 RSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460


>gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T85]
          Length = 384

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 2   GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 61

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 62  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 121

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 122 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 177

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 178 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 235

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 236 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 295

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 296 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 355

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 356 VLVKASNAAGLGAVADALVAD 376


>gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
 gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
          Length = 439

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 57  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 116

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 117 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 176

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 177 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 232

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 233 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 290

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 291 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 350

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 351 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 410

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 411 VLVKASNAAGLGAVADALVAD 431


>gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 392

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 10  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 69

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 70  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 129

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 130 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 185

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 186 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 243

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 244 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 303

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 304 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 363

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 364 VLVKASNAAGLGAVADALVAD 384


>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580]
          Length = 488

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 164/467 (35%), Gaps = 54/467 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           S        +  I +DSR +     F  IKG   DGHD+   A +KGA  +V   ++   
Sbjct: 15  SYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREV--- 71

Query: 78  IGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +PV  +     AL  L+     +   +  +I ITG+ GKT+T  M+         
Sbjct: 72  --DADVPVIIIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGS 129

Query: 136 TYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLT 179
               IG+    I      A+                +   VD  + E+    L   R   
Sbjct: 130 RTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR--V 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFE 233
           H     IA  T +   HL     +EE   AK+ +F  L      E      LN DD    
Sbjct: 188 HGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASA 247

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                + A     + ++G   +AD      K   + +  ++     S +V    +G    
Sbjct: 248 YFAQVTSA----HLLTYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L    I         T  + +       G   R+        F +I + Y   P S+
Sbjct: 304 YNVLTAAAIAIAADIPFATITEGIEGLKGVRG---RFELVDAGQDFPVIVD-YAHTPDSL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
           +  ++    ++   EG+   V+G     G+  ++    +A++        V+ +      
Sbjct: 360 ENVLNTCRGLT---EGKLFVVVGC---GGDRDKTKRPKMAKIAVDLADEPVFTADNPRSE 413

Query: 410 HVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVV--KS 451
           + LA+ + +   +   Y  ++   +    F  ++   GDVV++  K 
Sbjct: 414 NPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460


>gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
 gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
          Length = 430

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/453 (23%), Positives = 191/453 (42%), Gaps = 44/453 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + Q  QG     V       ++ DSR + P  AF A+ G    G +F   A+Q GA LV+
Sbjct: 17  VAQVTQGRVHPPVKPAL--DLTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVL 74

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +     +          V D   AL +L  A R     T++ + GS GKTTTKE +   
Sbjct: 75  TDQAHPGA--------VQVADPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQG 126

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L       A  G+ NN  G+     R+       + ELG+  LGE+  L +L  PH+ V+
Sbjct: 127 LG----WPAPEGNLNNAPGLAQFFFRLQPHAPGAVVELGIDRLGEMAELCYLAEPHLGVL 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+   HL     +E +   +  +                         +  + +  + +
Sbjct: 183 TTLGAEHLEGLGTLENVIREETGLLAS------------SPVRLASTQAAELVNLPGLKT 230

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G  +  DF+    +   + +      Q     V     G+      L  L +  ++   
Sbjct: 231 YGI-EAGDFRATDLELSLDSTRFRFNGQ----RVYLPYPGFGPLLGALAALAVAELVGVA 285

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  I+ L+      GR +R     ++G    ++++YN+NP S++A +  LS +     G
Sbjct: 286 LDPVIERLAHLQLPFGRMERL----HKGGLIFLNDAYNSNPLSVRAGLEFLSHLP----G 337

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R+  VLG+M E+GE S ++H++ A + +  +   V++  +      +     +     ET
Sbjct: 338 RKWLVLGEMRELGEESLAYHLEAARLAASVSPDVVFVGKYAPAQAAETGKVGL-----ET 392

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++    ++++    GD+V +K+S S G  +L+ 
Sbjct: 393 LEEAKAYLKTHAQAGDLVYLKASRSIGLEQLLE 425


>gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
 gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
          Length = 482

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 135/489 (27%), Positives = 207/489 (42%), Gaps = 38/489 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W+   L  A  G  +       +    IDSR+  P   F  I     DGHDFI  A+  G
Sbjct: 3   WSPERLAAAASGRLLR-AGTRPIQAAFIDSRTPTPGGLFVPIVAAR-DGHDFIPAALAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V      ++      V  V D L  L +LA  AR +    ++AITGS GKTTT+ 
Sbjct: 61  ASATLVGPGRGEAVPEGDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTTRA 120

Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDF---GIFELGMSHLGEIRFLTH 180
            +  AL +         G++NNH+G+PLTL       +     + ELGMS  GE   L  
Sbjct: 121 FVEAALRTAFDPLICTQGNFNNHLGLPLTLVGGVAGTEPPRAAVLELGMSAPGENDHLAQ 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIFLNYDDSFFELLK 236
           +  P + VIT+IA  HL     +E IA+A+AE    L  +G       L  D+    L+ 
Sbjct: 181 VAGPSVHVITSIALEHLEFMGSLEAIAAAEAEPLAHLRASGGHRPLAVLPGDEP--ALVP 238

Query: 237 AKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKS------MEVVH 285
                     +  FG    A     D  +   +  + ++   ++L+G+       + +  
Sbjct: 239 HLPGPDSGLRVLRFGSPDAAIGAPLDVAIVAVEVGA-RTRAVLRLRGEDGQEDRALSLSL 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A+N    + + + L  D+D   +AL    P   RG+     L      LI + 
Sbjct: 298 RTFGAHNARNAAAAVAVAAHLGLDLDAVARALEAVEPVGDRGRLLELELGGHTHALIADC 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM AA+  L+ +    +G R+AVLGDM E+G    + H ++    +   I  V 
Sbjct: 358 YNANPGSMSAALGSLAML----DGPRVAVLGDMLELGPDEDALHREVGTEAARLGIDAVL 413

Query: 406 LSGFHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCG 456
             G    A+ +A   +      H    + +D    +I++ L      G  V+ K+S    
Sbjct: 414 GVGPRARAIAEAAADAKPGLVAHAVERDAVDEACAWIRARLEGASEPG-AVLFKASRGIQ 472

Query: 457 FYRLINLLL 465
             R++  L 
Sbjct: 473 LERVVEALR 481


>gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T92]
 gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
 gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
          Length = 391

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 9   GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 68

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 69  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 128

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 129 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 184

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 185 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 242

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 243 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 302

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 303 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 362

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 363 VLVKASNAAGLGAVADALVAD 383


>gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
 gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
          Length = 483

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/474 (21%), Positives = 170/474 (35%), Gaps = 46/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I+    G V    V  ++ DSR++   + F A KG  +DG+DF   A++ G
Sbjct: 1   MNLKELLNNIEAKIYGKVSPIEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  +  +         LS+      ++  L A            K  I+ +TG+ GKTT 
Sbjct: 61  AIAIASSIYNPF----LSVVQIVSSNLPQLEAELSAKYYNYPSKKLCIVGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLT----------LARMPVD-VDFGIFE 166
             ++        K    IG+      NN I    T          LA M  + +   + E
Sbjct: 117 SHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRLTSAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  +  L   V   + V+T I   HL      EE  +AK ++F  L  TG   +N
Sbjct: 177 VSSVGL-VLERLAE-VDFDVGVLTNITLDHLDFHGSFEEYINAKLKLFSKLPATGLAVVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D S+       + A  I    ++G    AD++    +     +  ++  +G+S+     
Sbjct: 235 GDLSYASRFLEMTQAQPI----TYGIECPADYRAMHLRSSPFGTDFDLVYRGESLPCRLP 290

Query: 287 GIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            IG H   N+L  + +       D+   I   +      GR +             I   
Sbjct: 291 LIGKHNVYNILAAIAVAHQHCNGDLQQLISLAANVESPRGRLEPVFSGPCP-----IYID 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++     L  + P  +G+ I V G     G+  QS    +AEV+  Y  + V 
Sbjct: 346 YAHTPDALENVCKTLHALLPE-QGKLIVVFGC---GGDRDQSKRQIMAEVVERYGFAVVT 401

Query: 406 LS---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
                G     +  A+                    +  S   D D+V+V  K 
Sbjct: 402 SDNPRGEDPEEIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455


>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 498

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 168/471 (35%), Gaps = 56/471 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V  I+ DSR + P   F A++G   DGH F   AV++GA  V+V   +    
Sbjct: 15  VTNAENPDVLNITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEEPVADVP 74

Query: 79  GSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            S  IP   V D     AL    +      +  +I +TG+ GKTT   ++   L S  + 
Sbjct: 75  AS--IPQVVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRK 132

Query: 137 YACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTH 180
              IG+    +              + + R+            + E+    L  +     
Sbjct: 133 AGLIGTVGAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEVSSHAL--VERRAA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFF 232
            V    A  T +   HL     +E  A+AKA +F  L         ++    +N DD + 
Sbjct: 191 GVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWS 250

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            ++   S A     I ++G  + AD + R  +  +  +   V     + E+    IG   
Sbjct: 251 PVMAEASAA----PILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFN 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + I  +         + +  +    GR +R     ++G    +   Y   P  
Sbjct: 307 VYNTLAAVAIALVEGLAASEIQEGIRSYPSVPGRMERI----DEGQPFSVFVDYAHTPDG 362

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
           ++  ++ + + +P    R + V+G     G+  ++    +AEV        ++ S     
Sbjct: 363 LENVLASVREFAP---ARVLVVVGC---GGDRDRTKRPKMAEVAVRLADRAIFTSDNPRS 416

Query: 409 FHVLALKDALPRSIHVHYSETMDG------LFLFIQSSLVDGDVVVV--KS 451
              +A+   +   +   Y+  +              +    GDVVV+  K 
Sbjct: 417 EDPVAILAEMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKG 467


>gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis EAS054]
 gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
 gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
          Length = 391

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 9   GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 68

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 69  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 128

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 129 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 184

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +     A V+    AL+   P      R +        T+ID++
Sbjct: 185 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDA 242

Query: 346 YNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S 
Sbjct: 243 YNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSR 302

Query: 404 VWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDV 446
           + + G        H  A+ +    S                   D     +++ L  GDV
Sbjct: 303 LVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDV 362

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 363 VLVKASNAAGLGAVADALVAD 383


>gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
          Length = 453

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 208/440 (47%), Gaps = 18/440 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N + I+S+ +   + F A+KG + DG+ F   A ++GA L V +     +  S  I    
Sbjct: 25  NNVVINSKEVKKGDIFLALKGTNVDGNSFFKEAYERGAILTVFDNPYFYNKAS--INKVL 82

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   A+    +     + A  +AITGSVGKTTTK++L    S   ++Y    +YNN +
Sbjct: 83  VEDSFNAIKSFGIWKLKNNFAKRVAITGSVGKTTTKKLLYEIFSKQYQSYMSYKNYNNEL 142

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+ ++ A +P +VD+  FE+G +  GEI+  T  +RP +AVIT IA +H+  F  + EIA
Sbjct: 143 GIAISCANIPDEVDYAFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLNEIA 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           + K  I E  +    ++LN +D+ +     K   +  K I++ G S+ ADF++   K   
Sbjct: 203 AEKFSIAE-TDSVKELWLNENDTVY----LKDEIVKNKKIFTVGFSEKADFRIIDIKSLD 257

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V+      +   +   YH   N  M  G+      + D   +A+  F P+E RG
Sbjct: 258 GGYEFYVKFNRDKFKFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLPEEKRG 317

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                  N     +ID++YNA+  S+ AA+  L +     + +    +G++ E+      
Sbjct: 318 ----VVYNYENIAIIDDTYNASIDSITAALKSLDKYKCFNKDKIAI-IGEIAEIEGFEDE 372

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +  L E     +   V   G +    +D      ++ +      L+ ++ +++  G   
Sbjct: 373 IYEKLIEFAKKLSGVTVIFCGDYFDKYEDF----ENIKFFNNKQKLYKYL-NNINSGCF- 426

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +VK+S S  F  +++ L+ +
Sbjct: 427 LVKASRSKKFEEIVDYLITK 446


>gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
 gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
          Length = 511

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/465 (20%), Positives = 171/465 (36%), Gaps = 49/465 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-VNTDMV 75
             +G      +  ++ +S+ + P+  F A++G   DGH FI  A+++GA  VV       
Sbjct: 27  TVVGSATARKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGAVAVVGEFVPEA 86

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI 133
            +          V +   AL  LA    +    +  +I ITG+ GKTTT  ++   L++I
Sbjct: 87  FAERFPKASFVQVSNSRRALGILATIFHMNPARRLRLIGITGTNGKTTTAFLVYHMLNAI 146

Query: 134 KKTYACIGSYNNH---------------IGVPLTLARMP-VDVDFGIFELGMSHLGEIRF 177
            +    IG+                   I +   L RM  V     + E+    L +   
Sbjct: 147 GQETGLIGTVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVSSHALEQ--E 204

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   IAV T +   HL      E    AK ++F+GL    T   N DD     + A
Sbjct: 205 RVAGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRATALYNIDDPSGPAMVA 264

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A       S+G+ ++A  ++R      E   + + + G+        +G   A N+L
Sbjct: 265 DTQAC----CISYGQREDAQIRMRIVGHSLEG--LTLNIDGR--FQRFPLVGCFNAYNLL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G+   +  D D  ++AL       GR +R+     +   T I + Y   P +++  +
Sbjct: 317 AAYGVGRAMGLDPDLLLEALGRVPQIPGRFERF---TFEDGTTAIVD-YAHTPDALENVL 372

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             + ++ P    R   V G   E     +     +AE L+      V ++  +  +    
Sbjct: 373 RTIREVMPE-GARLWCVFGCGGERDRGKRPMMGAVAERLA----DCVIVTSDNPRSEDPL 427

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                ++  +       +                 GDVV+V  K 
Sbjct: 428 QIFEDIRQGMRHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKG 472


>gi|167629674|ref|YP_001680173.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592414|gb|ABZ84162.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 599

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/470 (22%), Positives = 186/470 (39%), Gaps = 16/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           W    +     G  +   P+  +  +    R +     +    +     D   +   A +
Sbjct: 6   WNVRAVAAITGGQLLSGRPEDPLRYVCE--RLVDCGKGDVLIPLVNL-TDPAGYAARAAR 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG G++V+     ++  + ++ V GV  V  A  +L  A R R KA I+A+TGS GKTTT
Sbjct: 63  KGVGVLVLPDRTASAAANAAVAVIGVGSVRDAYFRLVKAYRHRCKARIVAVTGSAGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L+   +      +YN   G+  TL R+     FG+ ++G      I F   LV
Sbjct: 123 KEMIAAVLAEAGEVQKNWRNYNGPYGIGYTLFRLRPHHTFGVVKIGAYIPNSIDFGARLV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + VIT I   H +   G E +   K ++   L K G + LN DD     +       
Sbjct: 183 APEVGVITCIGLGHAAALGGGEGVRREKEKLLTHLPKKGLLVLNGDDPGCRSVDLSRCQA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLG 301
            ++ +    + ++      + +   + +   +    + +EV   G  G     + L+   
Sbjct: 243 PVRWVGVECEREDLSLWAERIQVHRDGTRFLLCGLEREIEVELPGFFGRPAVIDALLAAA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   +    ++    L+       R    R     G   LID +YNANP SM A++   +
Sbjct: 303 VGDHMGLPPESIASGLTKVEYTPRRFSPIRLP---GRRLLIDATYNANPHSMSASLESAA 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
           +++  G+G  +A+LG M  +GE +   H  +    +      +   G     +       
Sbjct: 360 KLAVEGKG--LALLGTMSNLGEEAPEQHRAIGRRAAELGF-ALIALGEQAETMASGATEA 416

Query: 421 SIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              V Y+        +       L +  V++VK+SNS     +   + +E
Sbjct: 417 GGRVIYASKQWEKGHVVALALKELPEEGVLLVKASNSVELEIVAEAIEKE 466


>gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252]
          Length = 538

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/392 (25%), Positives = 163/392 (41%), Gaps = 24/392 (6%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L V+    +      +I           L             TII ITGS GKT+TK
Sbjct: 152 GAPLWVLLAGWLLWPVERAIQEGFKRKARRKLAAH-------PNLTIIGITGSYGKTSTK 204

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            ++   LS   +  A  GSYN  +G+   +  ++  +    + E+G+ H G+IR L  + 
Sbjct: 205 FIIAEILSLRYQVLATPGSYNTPMGICKVINEQLRPEHQVLVLEMGIRHPGDIRELCAIA 264

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I V+T + P HL     IE IA  K+E+       G + LN DD     +  ++   
Sbjct: 265 RPDIGVVTAVGPMHLETMGSIEAIAREKSELVACTRPGGPVVLNADDPRVAAMAERARGP 324

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLG 301
             +   S   +  AD   R      E +   V+ + G         +G H   N+L+ L 
Sbjct: 325 VWR--VSVEGNPEADLVARDITYGPEGTRFVVRDETGTEQVFQTRLLGRHNVLNILLALA 382

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  I    +     A++   P E R +  R    +G  T+ID+++N+NP   + A+ +L 
Sbjct: 383 VGRIFGLRLRQMAHAVARLRPVEHRLQLRR----EGPITVIDDAFNSNPVGARNALEILG 438

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKD 416
           Q      GRRI V   M E+G      +  L   ++  ++    L G          L++
Sbjct: 439 QFRT---GRRIVVTPGMVELGAREAEENRALGRFMAQ-HVDLAVLIGPRRTLPIQEGLRE 494

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           A      +H   ++     F+++ L  GDVV+
Sbjct: 495 AGFPEDRIHVFRSLFEAQDFLKTYLQPGDVVL 526


>gi|319791795|ref|YP_004153435.1| UDP-N-acetylmuramoyL-tripeptide--D-alanyL-D-alanine ligase
            [Variovorax paradoxus EPS]
 gi|315594258|gb|ADU35324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
            [Variovorax paradoxus EPS]
          Length = 1592

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/476 (22%), Positives = 200/476 (42%), Gaps = 29/476 (6%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNG------------------ISIDSRSIAPQEAFF 44
            P+WT   L Q   G  +   P G+                     ++ D R++A  E F 
Sbjct: 1108 PVWTADQLAQITGGQWLVPPPAGWSVQSVVRLPMHLKVRPGPALFVASDYRTLAAHENF- 1166

Query: 45   AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
            +     +D HD +     + AG +V              P+  V D + AL  L  AAR 
Sbjct: 1167 SHAPEDWDQHDDLPRLHTQCAGAIV---QHAVEGLPPDFPLLQVPDPIRALLSLGAAARA 1223

Query: 105  RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            R K  ++ +TG+VGK++T  M+   L    +    + + N+ +GVP  +A +  DVD  I
Sbjct: 1224 RYKGLVVGVTGTVGKSSTIAMVRDLLPPGARVLTTVENNNSRVGVPGAMASLGPDVDVCI 1283

Query: 165  FELGMSHLGEIR-FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+  S L   R  ++   RPH+A++T +  +  +  + +E+ A  K+  F GLE  G  
Sbjct: 1284 LEMAQSALWMDRGPISLEARPHVAILTEVGLSQTAKTNTLEKTAEYKSRAFLGLEPGGIA 1343

Query: 224  FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             ++        +   +     K +++ G     + +L   +  S    + +  +G+  E 
Sbjct: 1344 VVSGHIPHLAKVVKAAMRTAAK-VWTVGTGPGDNIRLLDARPESSGCRVRLSFKGRIHEY 1402

Query: 284  VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLI 342
            +       + +N  +    +  +  D + A   +          +        G   TL+
Sbjct: 1403 LFPVASIGLVRNSALAFAAIVAMGFDAEEASARMPNVRLPASVMQVEPLRTRSGALVTLV 1462

Query: 343  DESYNANPASMKAAISVLSQISPHGE----GRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            D+S+NA   SM+ A+S +             R++ VLG +  +GE +++ H  LAE L  
Sbjct: 1463 DDSWNAEVMSMRNAMSFVRSYRAPSGNAPVARKVGVLGRIVNLGEQAEAMHRGLAEPLLA 1522

Query: 399  YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              I+H+   G  +  L++ +P S+   + +    L L++   L DGD+++VK    
Sbjct: 1523 SGIAHLVTHGDEMRWLREEVPTSLLGPHFDNAAELTLYLGEYLRDGDLLLVKGDRD 1578


>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 481

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 176/457 (38%), Gaps = 42/457 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
              +     V GI+ D+R + P + F  IKG   DGH F   A + GA  +V        
Sbjct: 6   LFNVEQDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIV----CEYE 61

Query: 78  IGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           + +++IP   V D    L +LA     +   K  +  +TG+ GKTTT  +L   L+  + 
Sbjct: 62  LENIAIPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEG 121

Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-VDFGIFELG---MSHLGEIRFLTH 180
               IG+                  PL+L R+  + V+ G+ ++     SH  E+     
Sbjct: 122 HVGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHR-VD 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +  +A+ T + P HL     +++   AK ++FE L   G   +N DD + E L  +  
Sbjct: 181 YCQFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNRLK 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +Y++G   +ADF+       S  +  ++       EV    +G     N L  +
Sbjct: 241 ESQTA-VYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAM 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                 +  ++  I  +    P +G   R         FT+I + Y   P  ++  +  +
Sbjct: 300 ASAYSASMPMEQIIALIKTLSPVDG---RMEIINEGQDFTVIVD-YAHTPDGVEKVLEFV 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
           + I     G ++ +       G+  ++    +A++   Y    ++ +   H     D L 
Sbjct: 356 TGIK--QNGVKVVI----GCPGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILN 409

Query: 420 RSIHVHY-------SETMDGLFLFIQSSLVDGDVVVV 449
             +            + ++ +   I  +    D+V++
Sbjct: 410 EMVSGIKPMNYEVIVDRIEAIETAINKA-QKNDIVLI 445


>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 173/457 (37%), Gaps = 56/457 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  DSR +     F  I+G   DGH +   AVQ GA  V+   ++     SL++PV  V
Sbjct: 2   SLENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAEREL-----SLNVPVIIV 56

Query: 89  DDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D   A+  L  A   +   +  +I ITG+ GKTTT  ++   L+   K+   IG+    
Sbjct: 57  KDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTMYTK 116

Query: 147 IGV-----------PLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +              LTL +         V+  + E+    L E R   H    ++AV T
Sbjct: 117 VAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGR--VHGCDFNVAVFT 174

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   HL     ++E   AK  +F  L       K     LN DD      +  + A   
Sbjct: 175 NLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAA--- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I ++     AD +    +  +  +  ++        V    IG     N+L  +G   
Sbjct: 232 -QILTYAIDNEADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAAL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +++  ++++S      G   R+        F++I + Y   P S++ A+  + + +
Sbjct: 291 ASGLELEAILESISTVKGVPG---RFETVDAGQDFSVIVD-YAHTPDSLENALETVKEFA 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
              EGR   V+G     G+  ++    +A++        V+ S           +  +  
Sbjct: 347 ---EGRIFVVVGC---GGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAA 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +P   +   ++  +    +   +   GDV+++  K 
Sbjct: 401 GVPEGNYTMIADRKEA-IAYSVGAAGKGDVILIAGKG 436


>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium kluyveri DSM 555]
 gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
 gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
 gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 485

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/500 (20%), Positives = 178/500 (35%), Gaps = 57/500 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    I       +  I  DSR +   + F  I G   DGH +I  A + G
Sbjct: 1   MNLKDVLRGIDYKIIKGKNNLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V++  +          V  V D   AL  ++            II ITG+ GKTT+
Sbjct: 61  AAAIVLSKKVDFIPDCT---VIEVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L +       +G+ +N+I              L L ++  +     VD+ + E
Sbjct: 118 TFMVKSILETAGYKVGVVGTISNYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L   R   + V    A+ T +   HL      EE   +K  +F+    +    +N
Sbjct: 178 ASSHSLYLDR--VYGVEFCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNTVNS---VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + E +   +         ++   KNAD      K  S      +  +G +  +  +
Sbjct: 233 IDDKYGERVYEDAKGKK----LTYAIDKNADLMADNLKIHSRGVNFNISYEGNTKHINLN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G+      D++T  K L       GR +    + N G+  ++D  Y
Sbjct: 289 IPGKYNVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVD--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +    + +   +G+ I+V G   +     +    ++    S +    V  
Sbjct: 347 AHTPDGLENILKCAREFT---KGKLISVFGCGGDRDSTKRPIMGNIGTKFSDFA---VVT 400

Query: 407 S----GFH-VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS------ 451
           S    G   +  +KD L   +  +    E               GDVVV+  K       
Sbjct: 401 SDNPRGEEPMAIIKDILTGIKKNNYIVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQI 460

Query: 452 --SNSCGFY--RLINLLLEE 467
               +  F    ++  ++EE
Sbjct: 461 LKDRTIHFDEREIVAEIIEE 480


>gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 189/436 (43%), Gaps = 26/436 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR I   E F A+K    DGHDF+  A + GA   +V+         + +P   V
Sbjct: 2   GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDRFQ----EEIELPQLVV 57

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+V  AL  LA   R   +A ++ ITGS GKTT KE+L   LS    T +  G+ NN IG
Sbjct: 58  DEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVLACLLSG-FATLSTRGNLNNLIG 116

Query: 149 VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           VP+++ R      +F + E G+S  GE+  L   + P   ++T + PAHL +   +E +A
Sbjct: 117 VPMSMLRPEGASCEFAVLEAGISEPGEMERLAAAINPEWGIVTALGPAHLEDLGTVENVA 176

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQC 266
             K ++F+G            + +   + A         +    +          ++   
Sbjct: 177 REKGKLFQGSRLRRVFAGESCEPYLSDMAA-------PRVLLVKQDPYLSVEWAFRFSSE 229

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + ++ +E ++ G      + G+G  +A N+ + L     +  +VD    AL  + P + R
Sbjct: 230 AGRTCLEQRIGGSVQRFEYEGLGAGLASNVALALATAFSMGLEVDQLRSALGSWKPSQMR 289

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +        G   +  + YNANP SM+ +++     +P GE R + V+G M E+G  + 
Sbjct: 290 NEWKEI----GGRLVFLDCYNANPISMRDSLATFVSNTPEGEPR-MYVIGCMEELGSEAS 344

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLA----LKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             H +L     L N   + + G    +    +KD+          ET++     ++    
Sbjct: 345 RLHEELGREFPLRNQDFLLVIGSEAASVLRGMKDSGHEMDRCFEIETIEEASERLKDFAG 404

Query: 443 DGDVVVVKSSNSCGFY 458
               V +K S      
Sbjct: 405 S---VFLKGSRRYRLE 417


>gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
 gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
          Length = 485

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 97/481 (20%), Positives = 180/481 (37%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              H LL+A+       + P+  +  +  D+R +     F  IKG   DGH F + A ++
Sbjct: 1   MKLHTLLEALPFVKMPAVNPE--ITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA  ++    +      + IPV  V +   A+  L      +   K  ++ ITG+ GKTT
Sbjct: 59  GAAAILAEKPV-----DVDIPVIIVRNTKRAMALLADRFYGQPSRKFRLVGITGTNGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIF 165
           T  ++        +T   IG+    I              LTL +   +     V   + 
Sbjct: 114 TSHIIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKTFHEMNARGVTDCVM 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L E R   H     IAV T +   HL     + E   AK+ +F  L      +K
Sbjct: 174 EVSSHSLVEGR--VHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDK 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD+  +  +  +       + ++G   +ADF        +  +   +    +
Sbjct: 232 PKYAILNADDAASKEFEQVTAV----PVITYGIDHDADFMAENIDMHARGTTFTLVTPFE 287

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             EV     G     NML  +    +    +D+ IK         G   R+        F
Sbjct: 288 KREVRLKLAGKFSVYNMLAAIAAGVVSGVPLDSVIKTAEAMEGVRG---RFELVNGGQDF 344

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ++I + Y   P S++  +  + Q +     ++I V+  +   G+  ++    +A++   Y
Sbjct: 345 SVIVD-YAHTPDSLENVLKTIRQFA----RKKIFVV--VGCGGDRDKTKRPVMAQIACKY 397

Query: 400 NISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--K 450
               ++ S        +A+   + + +     E +      I++++     GDVV++  K
Sbjct: 398 AHYPIFTSDNPRSEDPIAILREMEKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 329

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 140/303 (46%), Gaps = 8/303 (2%)

Query: 5   WTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T+ ++  A  G  +   +       GI+ D+R +   + F A++G  +DG DF   A++
Sbjct: 4   MTWDEIRAATGGRLLLGKMRGNDAFAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALR 63

Query: 63  KGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  V+    V+      +      V GV D L A  ++A A R++    ++A+TGS G
Sbjct: 64  AGAVAVMLPEPVSDAHRKELDRTPGAVIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+   ALS          +YNN IG+PLTL  M  +    + E+GM   G+I  L
Sbjct: 124 KTTTKELTAAALSGRGAVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAAL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P + ++T +   H+     IE IA AK+E+ E +   G + LN DD+    ++A 
Sbjct: 184 AAIAAPTVGIVTNVGETHMELLGSIENIARAKSELVEAIAPGGIVILNADDARVAAMRA- 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I ++G    AD + +  +    ++   V   G+  +     +G H   N   
Sbjct: 243 -QAADGVRILTYGIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRG 301

Query: 299 TLG 301
             G
Sbjct: 302 ACG 304


>gi|56807439|ref|ZP_00365398.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 342

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 152/343 (44%), Gaps = 28/343 (8%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +TY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  
Sbjct: 6   QTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGE 65

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFG 251
           AHL  F   ++IA  K +I +G+   G +    D   D +             + +  FG
Sbjct: 66  AHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPE---------NQMVIRFG 116

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             +  D      ++  +       +    +       G + A N ++   +  +L    +
Sbjct: 117 NQQEIDV--TGIQEDKDSLTFTTNVLATPVS--LPLPGKYNATNAMVAAYVGKLLAVTDE 172

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             I   +        G R           ++ + YNANP +M+  +   + I+ +  G++
Sbjct: 173 DII---AALQTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANIAKNPGGKK 229

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYS- 427
           IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   +  VHY  
Sbjct: 230 IAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFL 289

Query: 428 -----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 290 KAEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 332


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 198/467 (42%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL A+ G            G S DSR     E F A++ P  DGH +I  A+  
Sbjct: 6   MIDLDDLL-AVGGRLTAPPVTRRFTGFSYDSRLTGVGELFLALRTPRDDGHAYITDALAS 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +V  T       S +  V   DD      + A     +    ++ +TGSVGKT+T 
Sbjct: 65  GAAGIVCATP---PTESANATVIIADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTSTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +   L+ I  T+    S+N+ IG+P++LAR+  D  F + E G ++ GE+R LT L  
Sbjct: 122 RAIAAVLAGIAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELRRLTTLFP 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T+ +P  LS F  +  +      + E L   G   LN DD     L+A + A  
Sbjct: 182 PQIAVVTSASPMRLSAFGSVAGLTREFGALVEALPADGWAVLNGDDPTVAALRAVTLA-- 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG     D +    +   + + + +   G S++     +G       L  +G+ 
Sbjct: 240 --QVLTFGAGGGCDLRAETLRFGLDGTQVRLSYGGASVDAAIPLLGEPAVGAALAAVGVG 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ A   L+   P  G   R R    +    L+D++  A PA+M AA+     +
Sbjct: 298 LACGMSLEQAAARLAHIEPPAG---RLRPHPARNGAILLDDTVGAEPAAMLAAL---RTL 351

Query: 364 SPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDAL 418
           +     RRIAVLGD+  +  +     ++  A       ++ V +    +G  V+     +
Sbjct: 352 AALPARRRIAVLGDLPADSDDPRNEKNVCTAIGTLAAQVADVLIWKGDAGTSVIHAARQI 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +      T+      + S   +GD+++V    +    RL+  L+
Sbjct: 412 RPDLPATIVHTIAAALEAVPSDTGEGDLILVCGGAAARLERLVAALV 458


>gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL S4-378]
          Length = 491

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 173/481 (35%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ G
Sbjct: 1   MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    I              LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F        L   
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     I +FG  + ADF     +  S  S  +++     
Sbjct: 234 KIAVLNADDKESVRMQTATAA----HIITFGIKEPADFSASNIQITSHGSTFDLKTPVGD 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L       I A++      G   R+        F 
Sbjct: 290 FSLKIKMIGNFSVYNVLAAIATSFALRIP---VINAIATVESIPGVKGRFELVNAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P S+   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YSHTPDSL---LNVLQTIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S           +  +   +P S      E       +  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSEDPHAIIEDMTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|150391164|ref|YP_001321213.1| Mur ligase middle domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951026|gb|ABR49554.1| Mur ligase, middle domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 14/369 (3%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITGS GKTTTKEML   L +  K +    + N           +       + 
Sbjct: 41  PTVPTIAITGSAGKTTTKEMLASILQTKWKIFKSKENKNFQKNTQKHARMIKPWHQGVVL 100

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E GM      +     ++P+IAVIT +  AH   F   I+  A AK+E+ + ++  G ++
Sbjct: 101 EFGMGEANTGKMHCSHIQPNIAVITNVGSAHYGVFGNSIKLTAKAKSELIKYMKPEGILY 160

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD+  +LL+ K        I++      +D+Q    K   +    +V+L  +  +  
Sbjct: 161 INNDDNNSKLLQIKGFK---GEIFTVSIKNKSDYQAVNIKYVDQGMTFQVKLDDQLEDFF 217

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               GYH   N L  +G+                     E   +R           ++D+
Sbjct: 218 IPTFGYHNVINALFAIGVSHHQKFSPSEIKVG---LKNYEVPVRRLNHYELPNGLVILDD 274

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SY+ANP + KAAI VL ++      +++ +LG M E+GE S   H ++ + L+   +  +
Sbjct: 275 SYSANPEATKAAIDVLVELGKIK--KKLVILGSMLELGEYSIEGHKEVGKYLAQNKVDKI 332

Query: 405 WLSGFHVL-----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            + G         A++   P S  + ++++ + + L++Q  +     ++VK S      +
Sbjct: 333 VIIGKEARWIGKGAVEAGYPPSRILLFTKSRNKMHLYLQKLIKPNMAILVKGSKLMQMNK 392

Query: 460 LINLLLEEF 468
            +N LL+ F
Sbjct: 393 TLNYLLKNF 401


>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
 gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
          Length = 483

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 169/472 (35%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQ I     G VP   V   + DSR +   + F A +G  +DG+DF   AV++G
Sbjct: 1   MNLKELLQGISAKIYGKVPTLEVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++ +      +  + I    V+ +   L       R   K  +  +TG+ GKTT   
Sbjct: 61  AIAILSSFYNPF-LSIVQIVTSCVEQLEAELAA-KFYGRPSEKLEVFGVTGTNGKTTVTY 118

Query: 125 MLTIALSSIKKTYACIGSYNN-----HIGVPLTL----------ARMPVDVDFGIFELGM 169
           M+   L    K    IG+  +      I    T           A M  +    +  + +
Sbjct: 119 MIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRKAVA-MEV 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +G     T      + ++T +   HL     +E   +AK ++F  L K G   +N D 
Sbjct: 178 SSIGLELNRTAQTSFDVGILTNVTLDHLDFHGTLENYLTAKEKLFSQLPKNGCAVINADS 237

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +     + + +       ++G  + A+++    +     +   +  +GKS       IG
Sbjct: 238 PYASRFCSIASS----RCVTYGIEEAAEYRACDLQLSLLGTRYTLVHRGKSYLCKSPLIG 293

Query: 290 YHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            +   N L  +  V      ++   + AL      +GR +             I   Y  
Sbjct: 294 RYNVYNTLAAIAAVHERSNQELPELLVALENAPLPKGRLEPVFSGPCP-----IYIDYAH 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ L ++    +GR I V G     G+  +S    +A V   Y  S V    
Sbjct: 349 TPDALDNVLATLKEL-MSCQGRVIIVFGC---GGDRDRSKRKLMARVAERYGFSIVTTDN 404

Query: 409 FH-------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +  + +      +    +    +   I S   D DVV++  K 
Sbjct: 405 PRKEDPEVIIHEICEGFTSQKYCVEQDRKKAILRAI-SMASDKDVVLIAGKG 455


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 195/468 (41%), Gaps = 13/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           ++ F +L + +   ++ IV    +  +  DSR+++      FFA++    DGH +I    
Sbjct: 1   MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +G    V++      +  +    +  V   L AL ++A   R      +I ITGS GKT
Sbjct: 61  DRGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L    +      SYN+ IGVPL++ +M  +   GIFE G+S +GE+  L  
Sbjct: 121 IVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLES 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++ P   +IT I  AH  NF  I+     K  +F       TI  N D    E+  A S 
Sbjct: 181 IICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFLHCH---TIVYNGDCE--EIAAAISF 235

Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   S+ ++K  A   + + +    ++ ++ +  GK   +V         ++++  
Sbjct: 236 CGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDIIHC 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++S+L       + A   F   E    R          T+I++ Y+ +  S+  A+  
Sbjct: 296 ITLISVLC---PEVLSARKRFAGLEPVEMRMEVKAGDHGNTIINDVYSNDVYSLTLALDF 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             + +     +++ +L D+ + G   +  +  +A  L +Y +      G  + + +    
Sbjct: 353 QRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFA 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   + + +       +        +++K +    F ++   L+++
Sbjct: 413 -GMSAVFFKDVATFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQ 459


>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 259

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 137/259 (52%), Gaps = 7/259 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++  A++G  IG        GIS D+R++   + F A+ G  +DGH+F+  AV +G
Sbjct: 4   FTVSEVCLAVKGSLIGGSAGAIFTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++   +  +    I V   DD   AL  LA   RLR    +IA+TGS GKTTTK+
Sbjct: 64  AAGVLISRRDI--VIPSGIAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+S  K      +YNN IG+PLTL  +  D    + E+GM   GEIR L  +  P
Sbjct: 122 MTAAVLASRFKVLKTEANYNNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIRELAEVALP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V+T +   H+     +E IASAKAE+ E +++ G + LN D+ +   +++K+ A   
Sbjct: 182 TVGVVTNVGETHIELLGSLENIASAKAELVENIQE-GLVILNADNPYVYAMRSKTKAA-- 238

Query: 245 KTIYSFGKSKNADFQLRKW 263
             +  FG +  AD +    
Sbjct: 239 --VIFFGLNSQADVRAENI 255


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 100/439 (22%), Positives = 173/439 (39%), Gaps = 17/439 (3%)

Query: 32  IDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88
            DSRS+    +  FFA+K    DGH +I     +G    VV                  V
Sbjct: 3   TDSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVVEQVPEAYETLYPQANFLRV 62

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              L AL +LA   R      I+ ITGS GKT  KE L   L   ++      SYN+ IG
Sbjct: 63  PHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRIVRSPRSYNSQIG 122

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  +    + GIFE G+S  GE+  L  +++P I V+T++  AH  NF  +EE   
Sbjct: 123 VPLSVWLLNEQTEVGIFEAGISQPGEMMALRDIIQPTIGVLTSLGAAHQENFRSMEEKCM 182

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+    E    +    D+        + +  G K  +S       D Q   + +  E
Sbjct: 183 EKLELMHDTEA---MVYCSDNDIVSRCIRRMNYKGEKISWS-----TCDQQAAFYVKSVE 234

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S +    + +        I     ++ +    +   L          +    P      
Sbjct: 235 NSHITYIWKEEENCFDIPFIDEASIEDCITCAAVALRLGLTPGDLADRMPKLEPVA---M 291

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R      Q    LI++SYN++  S+  A+  ++        +R  +L DM + G   +  
Sbjct: 292 RLEVKEGQRGCILINDSYNSDINSLDIALDFMN--RREELKKRTLILSDMFQSGLSPEKL 349

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +  ++E+     I+     G  + A  D +  +    +++    L     + L   ++++
Sbjct: 350 YAQVSELAVKRGITKFIGIGAQLTAQADKIQIADKQFFADVNHFLGSDAFTGLR-NEMIL 408

Query: 449 VKSSNSCGFYRLINLLLEE 467
           +K +   GF ++   L ++
Sbjct: 409 LKGARPFGFDQITEQLEQK 427


>gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
 gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
          Length = 436

 Score =  246 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 198/459 (43%), Gaps = 44/459 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +A  G        G V  +   S  +     F A+ G    G +F   A+ KGA
Sbjct: 18  TPEWVAEATGGRLHPGG--GPVRDLHWHSGQVGEGFLFVALPGSRAHGREFAGEALAKGA 75

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+ +    A+          V+D   AL +L  A R      ++A+ GS GKTT KE 
Sbjct: 76  SLVLSDRPGRAT--------VEVEDPYKALIRLGRALRDLFPGPVVAVGGSSGKTTAKEA 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L       A  G+ N    +     ++P +    + ELG+  +GE+  L  L RP 
Sbjct: 128 LAQGLGF----PAPEGNQNTAPPLARFFLKLPQEAPGAVVELGVDRVGEMAELMELARPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL  F  ++ +   +  +   L+    +         +  K    A G +
Sbjct: 184 LAVLTALGEEHLLAFGDLKGVVEEEMGL---LKAPMALV-------SQQAKEVLLAFGHR 233

Query: 246 TIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + ++G  + A F+    +   ++S    + +G  + V + G+G   A   L  +    
Sbjct: 234 VDWPTYGFGQ-ATFRGEGLELLPQESRF--RYRGLPVRVPYPGLG--PALGALAAMAAAE 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  D+    + L+      GR +R       G    ++++YNANP S+KA ++ L+   
Sbjct: 289 VLGWDLLEVAERLAHLRLPPGRMERREI----GGVVFLNDAYNANPLSVKAGLAWLAAQP 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+ AVLG+M E+ E +   H+++AE  +   ++ ++L G    A       +   
Sbjct: 345 ----GRKWAVLGEMRELAEKALELHLEVAEEAARLGLTPLYL-GPFAKAQAALGGEA--- 396

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              E ++    ++++ +  GD+V +K+S + G  R++ L
Sbjct: 397 --VEDLEAALAWLKARVRPGDLVYLKASRAVGLERILEL 433


>gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila psittaci RD1]
 gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila psittaci 6BC]
          Length = 483

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 170/474 (35%), Gaps = 46/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL   +    G +    V  ++ DSR++   + F A KG H DG+DF   A++ G
Sbjct: 1   MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFSHLAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V  +         L +      D+  L A            K  ++ ITG+ GKTT 
Sbjct: 61  AIAVASSIYNPF----LPVVQIISSDLPQLEADLAAKYYGHPSQKLCVVGITGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLT----------LARM-PVDVDFGIFE 166
             ++     +  K    IG+      N+ I    T          LA M   ++   + E
Sbjct: 117 SHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEMVKSNLSAAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R     V   + V+T I   HL   S  EE   AK ++F  L  +G   +N
Sbjct: 177 VSSIGLAVNRLAN--VHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLFSMLPSSGLAVVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D  +       + A  I    ++G  ++AD++    +     +  ++  +G++      
Sbjct: 235 NDLHYAAQFIEATQAQPI----TYGIEQHADYRASNLRFSPFGTDFDLLYKGETFACSSP 290

Query: 287 GIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            IG H   N+L  + +    L  D+   I A++      GR +             I   
Sbjct: 291 LIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRGRLEPVFSGPCP-----IYID 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++      L  + P  +GR I V G     G+  QS    +A+V+  Y  + V 
Sbjct: 346 YAHTPDALDNVCKTLQALLPQ-DGRLIVVFGC---GGDRDQSKRKIMAQVVEKYGFAVVT 401

Query: 406 LS---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
                G     + + +                    +  S   D D+V+V  K 
Sbjct: 402 TDNPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455


>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
 gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium cellulovorans 743B]
 gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
          Length = 481

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 177/474 (37%), Gaps = 48/474 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ +    +       +NGI  DSR +   + F  I G   DGH+F   AV  G
Sbjct: 1   MNLKELIKDLDYEVLNGDIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A +++   D+        + +  V +   AL K++         +  II +TG+ GKTT+
Sbjct: 61  ANVIICEKDI---TAYKDVTIIKVKNTRKALAKVSAVYYNNPERRLKIIGVTGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             ML   L         IG+  N+I              L L ++  D     VD+ + E
Sbjct: 118 VFMLKAILEKAGFKVGLIGTIANYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +  +  + T +   HL     +E   ++KA++F   + +    +N
Sbjct: 178 VSSHSLDLDR--VYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLFTVSKSS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   L  K+         ++   KNAD +       S  S  E++  G+      +
Sbjct: 233 LDDDYGVALADKTQEK-----LTYAIDKNADLKAENINLTSRGSTFELEYNGEKEIFNIN 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +  QN L  +G +      +    + L       GR +      N GF  ++D  Y
Sbjct: 288 IPGKYNIQNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGFEIIVD--Y 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLY 399
              P S+   + +L       +GR I+V G   +     +       S + D+A + S  
Sbjct: 346 AHTPDSL---LKILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIITSDN 402

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S        +  +   + +  ++   E           +  +GD++VV  K 
Sbjct: 403 PRSEEPS--EIIKQVVSGIKKDNYL-VEEDRRKAIKLAMKTAKNGDIIVVAGKG 453


>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria innocua Clip11262]
 gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
          Length = 491

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 173/481 (35%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ G
Sbjct: 1   MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    I              LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F        L   
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     I +FG  + ADF     +  S  S  +++     
Sbjct: 234 KIAVLNADDKESVRMQTATAA----HIITFGIKEPADFSASNIQITSHGSTFDLKTPVGD 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L       I A++      G   R+        F 
Sbjct: 290 FALKIKMIGNFSVYNVLAAIATSFALRIP---VINAIATVESIPGVKGRFELVNAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P S+   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YSHTPDSL---LNVLQTIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S           +  +   +P S      E       +  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSEDPHAIIEDMIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 488

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 175/477 (36%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ ++   +       + GI  DSR +     F  I G ++DGH FI  A+++G
Sbjct: 3   MVLRELIKDLKEKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           + +VVV  D+  +     + V  V +   AL             K  ++ I G+ GKTTT
Sbjct: 63  SRVVVVEKDVKTAKD---VTVIKVPNTRYALAVLANRFYGYPSKKLQVVGIAGTNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE---LG 168
             ++   L    K  A  G+    +              L L  M  ++    FE   + 
Sbjct: 120 TYLVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNY 227
           +S    +          I V T I+  H+     +E    A+ + F  L +TG    +N 
Sbjct: 180 VSTHATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVINI 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD + E +   +       I ++G   KNAD +    K     S   V            
Sbjct: 240 DDPYAEHIIKNTRT----EILTYGINDKNADIRAFDIKVSKTGSRFNVITPLGETVFYLR 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G+      +++   +A++        G+  R    Q F  ++D  Y
Sbjct: 296 LPGRYNVYNALAAVGVGISEGLNLNEIREAIA---HASVPGRFERIDCGQSFDVIVD--Y 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVLSLYNI--- 401
              P +++ A+     +S   EGR I V G     G+          +A  +S   I   
Sbjct: 351 AHTPDALQKALETARGLS---EGRIIVVFGC----GDDKDRRPLMGVVAARMSDIAILTS 403

Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             S        +  ++  + +  +      ++  F  I  +L    +GD+V++  K 
Sbjct: 404 DNSRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKG 460


>gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
 gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
          Length = 433

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 184/451 (40%), Gaps = 56/451 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P  AF A+ G    G+ F+  A+  GA  V+ + D+  +          VD
Sbjct: 23  LTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTDLDVPRA--------VRVD 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D  GAL   A + R +    ++ ITGS GKTT K     AL +          +N    +
Sbjct: 75  DARGALFAWARSERAK-NPLVVGITGSAGKTTAKSYAAAALDAHFMPV-----FNTMPAI 128

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L +        + E+G+ H+GE+  L  LVRP + V+TTI PAHL  F  +E IA  
Sbjct: 129 ACFLVQYGASQKPLVVEMGIDHIGEMAELMDLVRPDVGVVTTIGPAHLEQFGMVETIAHE 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I   L     +             A         + S+G   +  F+    +   + 
Sbjct: 189 KGQI---LTARRALV-------GSQAAAFFPKAQFPHVDSYGFG-DVTFRGEGLELSPQA 237

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +          M V+        A+  ++ + +       +  A   +S      GR + 
Sbjct: 238 ARFRF----GGMGVILPLASRVQAEAAVLGMVLAREAGIALADAAVRMSAVEVPGGRYRL 293

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELSQSF 388
           +      G FT+ID++YNA+P +++AA+  L  + P GE GRRI+VLG M E+G   +  
Sbjct: 294 H-----PGRFTVIDDAYNASPVAVRAALDALHALKPEGEVGRRISVLGRMLELGPTEREL 348

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H ++            +  G     L +            T+  L   + + + DGD+V+
Sbjct: 349 HAEVGSYARE-QADLTYGVGEFAQELGERA--------FATVPELLADLLNEVRDGDIVL 399

Query: 449 VKSSNSC------------GFYRLINLLLEE 467
           VK+S               G   ++  LL++
Sbjct: 400 VKASRGISLTPEQRAVTGVGLDVVVEALLDQ 430


>gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
 gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
          Length = 461

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 186/460 (40%), Gaps = 23/460 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQ 62
           +   L   +QG  I    Q  V   I  +   +       F        D H       +
Sbjct: 5   SVQKLRNVLQGKLIHGSEQWSVKQAIYYNRHDLTKSHSLLFV----SRND-HINWQEIDR 59

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KG  L++ +        +L +  V  V  V  A        R   +  ++A+TG+ GKTT
Sbjct: 60  KGPSLIISDKPSTELKNALENTTVLQVKSVAQAYWAFIEYYRGLFEIPVVALTGTCGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML    S   +  A + S N        L  +       IFELG+ + G I+    +
Sbjct: 120 TKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGIDDKTQAAIFELGLGNTGNIKHQCMI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I +IT I   HL     +E    AKAEI EG+++ GT+ +N DD+  + +  K   
Sbjct: 180 YQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIKEDGTLIINADDANTKKISLKRFK 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I  FG    AD++  K +  +      +++  +   V   G G H   N L  + 
Sbjct: 240 ---GKIIKFGLQDTADYKASKVEFANTGMKFVLEVADERYNVFVPGYGEHQVYNALAAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   +  AI  L  F       +        G  T+ID+++  NP S++AA+ V+ 
Sbjct: 297 ASHEMGLTIRQAIAGLRTFKQMA---RHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVID 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            +    + + I VLGD+  +G   + +H ++  ++++  I  +   G     + D   + 
Sbjct: 354 TV--GKDKKVILVLGDIKRLGNFEEKYHREIGSMVAVRKIDTLITIGKRAEKIADQAQKD 411

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSC 455
             S  VH  + + G+   ++  L    +V++K    S S 
Sbjct: 412 GTSAEVHTFKEVAGVLELLKPKLDADTIVLIKGPMSSRSM 451


>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter sp. X514]
 gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X514]
 gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 483

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 178/477 (37%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ ++   I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVKCE-IKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D    + K+         SK T+I +TG+ GKT+ 
Sbjct: 60  AVAVVADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ML   L         +G+  N I              L L  +        V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         IA+ T ++  HL     +EE A  K+++F+  ++     +N
Sbjct: 177 VSSHSLALNR--VDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S A     + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 233 IDDKYSSMMIESSKA----KVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+  ID  Y
Sbjct: 289 IPGLFNVYNALAAITVADFLGISLRSVREA---LSQVTVKGRFEPVETGKDFYVFID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I + G     G+  ++    + EV   Y      L
Sbjct: 344 AHTPDGIQNIMEALKEYKT---GRKILLFGA---GGDRDKTKRPLMGEVAGKY-ADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKG 453


>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium novyi NT]
 gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium novyi NT]
          Length = 483

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/471 (20%), Positives = 174/471 (36%), Gaps = 40/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ ++   +    +  V+ I  DSR I+  + F AI+G + DGH FI  A+ +G
Sbjct: 1   MKVNELLKGLEYEILNGDLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A ++V + ++    G   I    V++   AL  +A            +I ITG+ GKTT+
Sbjct: 61  AKVIVCSKEIEIKKG---ITYIKVENTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L S   +   IG+ +N I              L L  M       ++++ + E
Sbjct: 118 TYMIKSILESAGHSTGLIGTISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +     + T +   HL      E    AK  +F+  + +    +N
Sbjct: 178 VSSHSLSLDR--VYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ E +         K   ++   K AD   +     +  +   +  + K   +   
Sbjct: 233 IDDTYGERILNDVPDSSNK--ITYSTEKKADLFAKDIVNHARGAEFVLCYKDKETHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G        ++   K L       GR +      + GF  +ID  Y
Sbjct: 291 IPGIYNVYNALCSAGACLSEGISMEDVKKGLESV-VVPGRCENATKDYDLGFDVIID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  +      +   +GR I+V G   +  +  +     +   +S   I  S  
Sbjct: 348 AHTPDGLENILETARDFT---KGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIITSDN 404

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +      +KD +   +  +    E               GDV+VV  K 
Sbjct: 405 PRTEEPSQIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKQGDVIVVAGKG 455


>gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 489

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/469 (21%), Positives = 175/469 (37%), Gaps = 50/469 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           QG++ G++IDSR + P + + AI+G   DGH FI  AV +GA  VV   D         +
Sbjct: 14  QGWIRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDV 73

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V     A + L   V        T++ +TG+ GKTT+   LT  L         + 
Sbjct: 74  PYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAGMRVGMLS 133

Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           S  N  G+    A++                       + E+     G ++  T  V   
Sbjct: 134 SVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSH--GIVQHRTSDVDFD 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGI 244
           +A+ T +   HL     +E  A+AKA +F GL        LN DD + +++     A   
Sbjct: 192 LAIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENCVA--- 248

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIV 303
             I ++G  ++ D + R  +    ++ + ++L  G+ +E V H  G +   N+L  +   
Sbjct: 249 -PIVTYGV-RSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVVAAA 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D     +       GR    R     G   ++D  Y   P +++  +S   Q 
Sbjct: 307 YVLGVSADDIAGVIPTLPTIPGRMHVIR--PEHGPTVIVD--YAHTPDALRQILSTARQW 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK-DA 417
           +    GR   V G     GE  +    ++  + +     HV +            +  + 
Sbjct: 363 TS---GRVWLVFGG---RGERDRGKRPEMGAIAASM-ADHVLITTDSSYSEDPERIANEI 415

Query: 418 LPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           L  +  VH                      D DV+++        ++++
Sbjct: 416 LAGAQRVHRARCDVVLDRAQAIERAVIEANDEDVILITG-RGHESFQVV 463


>gi|319795793|ref|YP_004157433.1| mur ligase middle domain protein [Variovorax paradoxus EPS]
 gi|315598256|gb|ADU39322.1| Mur ligase middle domain protein [Variovorax paradoxus EPS]
          Length = 1028

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/476 (25%), Positives = 211/476 (44%), Gaps = 38/476 (7%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGF-VNGISIDS-----RSIAPQE--------AFFAIKGPH 50
            WT  ++ +   G  +     G+  +G++  S     R +   +        A   +KG  
Sbjct: 573  WTASEMARVTGGEWVVRPEDGWRASGVTQRSFMRKGRVVFENQTRPSKTPLAAVTLKG-- 630

Query: 51   YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
                      V + A  V+             +PV  V +VL A+ +L   AR      +
Sbjct: 631  ----------VLQPAAAVLCTDPKPH--LDKRVPVLKVPNVLQAVLQLGEHARTEFTGRV 678

Query: 111  IAITG-SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
              + G   G +T   M+  AL+   +     G+ +   G+   L  MP    + + E+G 
Sbjct: 679  CGVLGHGTGSSTVAAMMAGALTVWGEVGQPEGNISLPSGIAWNLTCMPRHAAYWVLEMGT 738

Query: 170  SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            SH   +   + LVRP + V+T ++ A   +    +  A   A IF+G+     + LN D 
Sbjct: 739  SH---MPASSQLVRPSLVVVTGLSAASQKHRGPSDAAARMDARIFQGMAAGDNVVLNRDM 795

Query: 230  SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              F +    + A  ++ I ++G+ ++AD +L  +    +   ++ Q+ G+  ++  +  G
Sbjct: 796  PEFPIFAEAATAHQLQ-IVTYGEHEDADVRLLAF----DHGEVQAQVAGEPFQLRLNAPG 850

Query: 290  YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             HM    +  LG +  L   +  A++  + F P  GRG  +   +  G F LIDE+Y+AN
Sbjct: 851  RHMGAAAVAALGALQSLRLPLAAAVEPFAHFEPPGGRGALHTIHIGGGSFKLIDETYDAN 910

Query: 350  PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            P+SM+AA+ +LSQ +P    RR+A+LGDM E+G  +Q  H+DL   L       V L G 
Sbjct: 911  PSSMRAALELLSQ-APCEPARRVAILGDMQELGPAAQRHHLDLEAELLASQPDRVLLCGP 969

Query: 410  HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + AL  ++   +  H+   +  L   +   L  GD V+ KSS   G  RL  +L 
Sbjct: 970  LMRALHASIRTKVRSHWFVDVSDLSTALGGLLQPGDWVLAKSSAGVGLSRLARVLK 1025


>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 410

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 165/427 (38%), Gaps = 45/427 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     I +FG  + ADFQ    K  S  S  ++     +
Sbjct: 234 KIAVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGN 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L   ++ AIK +      +G   R+        F 
Sbjct: 290 FTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG---RFELVHAGQEFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P  +   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YAHTPDGL---LNVLETIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLS 407
            + ++ S
Sbjct: 400 TNPIFTS 406


>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 483

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 178/477 (37%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   + G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +VV+ ++    G   +    V+D   A+ K+         +K T+I +TG+ GKT+ 
Sbjct: 60  AIAIVVDREIKEYPG---VTTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ML   L         +G+  N IG  +  +                     V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   +     IAV T ++  HL     +EE A  K+++F+  ++     +N
Sbjct: 177 VSSHSLALKR--VNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S A     + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 233 IDDKYSSMMIESSKA----RVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+  ID  Y
Sbjct: 289 IPGLFSVYNALAAITVADFLGISLRSVREA---LSQVTVKGRFEPVETGKDFYVFID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I + G     G+  ++    + EV   Y      L
Sbjct: 344 AHTPDGIQNMMEALKEYKA---GRKILLFGA---GGDRDKTKRPLMGEVAGKY-ADFCIL 396

Query: 407 SGFHVLA---------LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + ++       E       +   +    DV+++  K 
Sbjct: 397 TSDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKG 453


>gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL J1-023]
          Length = 491

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 173/481 (35%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ G
Sbjct: 1   MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    I              LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220
           +    L + R   +     +AV   ++  HL     +EE A AK+ +F        L   
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     ++  + A     + +FG  + ADF     +  S  S  +++     
Sbjct: 234 KIAVLNADDKESVRMQTATAA----HVITFGIKEPADFSASNIQITSHGSTFDLKTPVGD 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N+L  +     L       I A++      G   R+        F 
Sbjct: 290 FSLKIKMIGNFSIYNVLAAIATSFALRIP---VINAIATVESIPGVKGRFELVNAGQDFP 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P S+   ++VL  I    E R   V+G     G+  +     +A++   Y 
Sbjct: 347 VIVD-YSHTPDSL---LNVLQTIDEFAEKRVFVVVGC---GGDRDKGKRPQMAKIAVDYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            + ++ S           +  +   +P S      E       +  +    GDV+++  K
Sbjct: 400 TNPIFTSDNPRSEDPHAIIADMIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
 gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
          Length = 500

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 159/485 (32%), Gaps = 56/485 (11%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL+ A+     +G +    V  ++ DSR+  P   F A++G   DGH F+  A + 
Sbjct: 1   MRLQDLVSALLHVRVVGEISAVEVTDVTADSRTAGPGSLFIALRGHTVDGHAFVDEARRS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA   VV   +        +P   V D   A   LA            +I +TG+ GKTT
Sbjct: 61  GAVAAVVEDCL-----DTPLPQIVVPDTRRAAAVLAAVFFRHPSRAMRVIGVTGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
              ++   L +       IG+    I              + L R+        V   + 
Sbjct: 116 VTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFAQMRDAGVSHAVM 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------- 217
           E+    L   R      R H AV T +   HL     +E    AK ++F  L        
Sbjct: 176 EVSSHALELDR--VAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFARLGNEYGDTR 233

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  +N DD   + +  ++ A       ++G  + AD + R+ +  +       +++
Sbjct: 234 ADQAFAVVNLDDPVGKWMARQTTA----QTVTYGVDRPADLRAREVEVDTRGVRFVAEIE 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G+   V     G     N L  +G   I   D+D     L+      GR +R       G
Sbjct: 290 GRRTRVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMERVDAGQPFG 349

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                   Y   P S+   +  L +++    GR I V G   +     +     +A   +
Sbjct: 350 VVV----DYAHTPDSLDNVLQALREVAS---GRLIVVFGCGGDRDRTKRPLMGRIAYTRA 402

Query: 398 LYNI---------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            Y I             +       L++    +                     + DVV+
Sbjct: 403 DYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDVVL 462

Query: 449 V--KS 451
           +  K 
Sbjct: 463 IAGKG 467


>gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
 gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
          Length = 478

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 203/472 (43%), Gaps = 25/472 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   ++ A     +    +       IDSR +     F A  G   +G+ ++L A Q GA
Sbjct: 5   SVEQIVAATHAQLLHRGTREVAGCAVIDSREVQQGSLFVAFAGEKVNGNSYLLSAAQAGA 64

Query: 66  GLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVG 118
            +VV +  +  ++         S+     DD    L  LA A R       ++ +TGSVG
Sbjct: 65  AVVVASEPVTDNLLDSLAATGASVLEAADDDCEAFLLALAAAWREAHPNWLVVGVTGSVG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEML   + + ++ +A  G++NN IG+PLT+   P D +  + ELGM+H GEI  L
Sbjct: 125 KTTTKEMLRRGIGATRRVHATAGNHNNLIGLPLTVLSTPEDTEVLVLELGMNHAGEITRL 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIFLNYDDSFFEL 234
           T + RP +AVIT +  +H+      + IA AKAEI  G+   G    T+       + + 
Sbjct: 185 TSVARPTVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAFGSIEPTLIQASAGDYTKF 244

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYH 291
           +  K          + G +++ D    +     E+      +    G S  V     G  
Sbjct: 245 IADKFARPARVVCKTVGATED-DVMSAQKVILDEKGLPTATISASSGWSRTVTLEVPGRV 303

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           +  ++L+ L  V  L  D+D A +A            R           +ID+SYNA+P 
Sbjct: 304 VVDDLLLALEAVETLGLDLDAAAEA---IEQMPATRMRLSVLDATCGAKIIDDSYNASPN 360

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-H 410
           S  AA+ VL Q+     GRRIA++G++ E+G   +  H  +   ++  N   V   G   
Sbjct: 361 STAAALDVLMQMPAE--GRRIALIGEIGELGPEEKRLHGYVGAYIAAKNPDFVAFVGTGA 418

Query: 411 VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
              + +A          +     ++     +   L  GDV++ K+S S    
Sbjct: 419 AREMVEAARVMGFSEDKIEQFNDVNEALAVLGPVLKQGDVLLAKASRSAQLD 470


>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 483

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 178/477 (37%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ ++   I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVKCE-IKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D    + K+         SK T+I +TG+ GKT+ 
Sbjct: 60  AVAVVADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ML   L         +G+  N I              L L  +        V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         IA+ T ++  HL     +EE A  K+++F+  ++     +N
Sbjct: 177 VSSHSLALNR--VDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S A     + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 233 IDDKYSSMMIESSKA----KVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+  ID  Y
Sbjct: 289 IPGLFNVYNALAAITVADFLGISLRSVREA---LSQVTVKGRFEPVETGKDFYVFID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I + G     G+  ++    + EV   Y      L
Sbjct: 344 AHTPDGIQNIMEALKEYKT---GRKILLFGA---GGDRDKTKRPLMGEVAGKY-ADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKG 453


>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 498

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 165/471 (35%), Gaps = 56/471 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V  I+ DSR + P   F A++G   DGH F   AV++GA  V+V   +    
Sbjct: 15  VTNAENPDVVNITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMVEEPVAEVP 74

Query: 79  GSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            S  IP   V D     AL    +      +  +I +TG+ GKTT   ++   L S  + 
Sbjct: 75  AS--IPQVVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRK 132

Query: 137 YACIGSYNNH-----IGVPLTLARMPVDVDF-----------GIFELGMSHLGEIRFLTH 180
              IG+           +P T         +            + E+    L  +     
Sbjct: 133 AGLIGTVGAKLGQASWPLPNTTPEAVEVHRWLRRFVDAGATHAVMEVSSHAL--VERRAA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFF 232
            V    A  T +   HL     +E  A AKA +F  L         ++    +N DD + 
Sbjct: 191 GVSFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWS 250

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            ++   S A     I ++G  +  D + R  +  +  +   V     + E+    IG   
Sbjct: 251 SVMAEASAA----PILTYGIERAGDVRARDVRLSASGARFFVDSPAGAFEIETPLIGRFN 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + I  +         + +  +    GR +R     ++G    +   Y   P  
Sbjct: 307 VYNTLAAVAIALVEGLTPTEIQEGIRSYPSVPGRMERI----DEGQPFSVFVDYAHTPDG 362

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
           ++  ++ + + +P    R + V+G     G+  ++    +AEV        ++ S     
Sbjct: 363 LENVLASVREFAP---ARVLVVVGC---GGDRDRTKRPKMAEVAVRLADRAIFTSDNPRS 416

Query: 409 FHVLALKDALPRSIHVHYSETMDG------LFLFIQSSLVDGDVVVV--KS 451
              +A+   +   +   Y+  +              +    GDVVV+  K 
Sbjct: 417 EDPVAILADMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKG 467


>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 513

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 171/484 (35%), Gaps = 53/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F DL+QA+   S G      V  +  DSR   P   F A++G + DGH F+  A  +GA 
Sbjct: 6   FSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             +V  +      +       V +   AL         R      II ITG+ GKTTT  
Sbjct: 66  AALV--ESWEPDLANYPAYAAVPNTRAALPLVAATFFGRPAEALGIIGITGTDGKTTTSY 123

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARM-PVDVDFGIFE 166
           ++   L S       IG+    +                  V   LA+M    VD+ + E
Sbjct: 124 LVDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWAVLE 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
                L  +  L       + V+T I   HL     IEE   AKA + E +         
Sbjct: 184 ATSHGLA-LHRLDECA-FDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAGRGPRPYP 241

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G + LN DD       A + A G   +  F  K   AD Q    +  ++ +   +     
Sbjct: 242 GGVVLNRDDEGAR---AIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRLTTPRG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+ V  + IG +   N L   G+  +L    +   + L       GR +R         +
Sbjct: 299 SVPVRLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDL---GQPY 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+I + Y   P S++ ++ +L  + P   GR IAV G   E     +     ++  L+ +
Sbjct: 356 TVIVD-YAHTPDSLEKSLRLLRSLVP---GRVIAVFGSAGERDRAKRPLQGAVSARLADF 411

Query: 400 NI---------SHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV 449
           ++             +        +DA       +   E               GD V++
Sbjct: 412 SVFTSEDPRFEDPDAIIAEIAAGARDAGAVEGRDYVCIEDRRAAIRAALDWARPGDGVLL 471

Query: 450 --KS 451
             K 
Sbjct: 472 AGKG 475


>gi|169827838|ref|YP_001697996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992326|gb|ACA39866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 159/365 (43%), Gaps = 15/365 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    IIAITGS GKTTTK  +   LS     +     +N           +       +
Sbjct: 4   KKGLPIIAITGSAGKTTTKAFVGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 63

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E GM++ G I     +++P+I+++T I  AH+ NF   +  +A AK+E+  G+++ G +
Sbjct: 64  LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 123

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD     L+ +        + + G   +AD++    +        +++L G+ +E+
Sbjct: 124 ILNKDDDNSRYLETQQFK---GKMLTVGIKSDADYRAYDLQYKDIGMSFKMKLHGQEIEL 180

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +   L          L+   P     +R      +   T+ID
Sbjct: 181 YIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPP----RRLTIYNLRDDITVID 236

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++ +++P  ++AAI VL+ I+   + R++A++G M E+G L +  +  + E +    I  
Sbjct: 237 DTVHSHPQGVRAAIDVLTNIA---KKRKVAIIGQMRELGVLREEEYRKVGEYIYKVGIDE 293

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               GF    + +A          VH+    D L   +   +   D ++VK ++    + 
Sbjct: 294 FITYGFRTDEMSNAAIEMGMDPSKVHHFINKDALHALLDKLIQPHDTILVKGASKTNMFE 353

Query: 460 LINLL 464
            +  L
Sbjct: 354 TVKYL 358


>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
 gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
          Length = 483

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 166/471 (35%), Gaps = 40/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ +   ++       VN +  DSR I   + F AI+G + DGH FI  A++ G
Sbjct: 1   MKLIQILKELDYTNLNGTLDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A ++V + D   +          V++   AL            +K  +I ITG+ GKTT+
Sbjct: 61  AKVIVCSKDTEINESCT---YIKVENTRKALAIIASNFYGNPSNKIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L         IG+  N I              L L  M       ++++ I E
Sbjct: 118 TYMIKSILEHAGCNTGLIGTIANFIGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +     V T +   HL      E    AK  +F   + +    +N
Sbjct: 178 VSSHSLSLDR--VYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFNNAKNS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +        +K   ++   + AD         +  +  ++  +G ++ +   
Sbjct: 233 IDDSYGERMLKDIPNTNLK--VTYSTERQADLVANNIVNHARGAEFDLIYKGTTIHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G        ++   + L       GR +      N GF  ++D  Y
Sbjct: 291 IPGIYNVYNALCSAGACLEEEISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVD--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  ++     +   +GR I+V G   +  +  +     +   LS   I  S  
Sbjct: 348 AHTPDGLENILNTAKDFT---KGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAIITSDN 404

Query: 405 WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +  + D +      +    E                DV+VV  K 
Sbjct: 405 PRTEEPMSIIDDVVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKG 455


>gi|239817426|ref|YP_002946336.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239804003|gb|ACS21070.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1024

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 208/476 (43%), Gaps = 38/476 (7%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGF-VNGISIDS-----RSIAPQEA--------FFAIKGPH 50
            WT  ++ +   G  +     G+  +G++  S     R +   +A          A+KG  
Sbjct: 569  WTAGEMARVTGGEWVVRPEDGWRASGVTQRSFLRKGRVVFEHQARPSKTPLAAVALKG-- 626

Query: 51   YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
                      V + A  V+             +PV  VDDV  A+  L   AR      +
Sbjct: 627  ----------VLQPAAAVLCTDPAPH--LDKRVPVLQVDDVPQAVLALGAHARTEFTGRV 674

Query: 111  IAITGS-VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
              + GS    +T   ML  AL+   +     G+ +   G+   L  MP    + + E+G 
Sbjct: 675  CGVLGSGTAGSTVAAMLADALAVWGEVGRPEGNVSLPSGMAWNLTCMPRHAAYWVLEMGS 734

Query: 170  SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             H   +     LVRP +AV+T ++ A   +    E  A   + IFEG+    +  LN D 
Sbjct: 735  PH---MLATAQLVRPMLAVVTGLSAASQKHRGPSEAAAHMDSRIFEGMAPGDSAVLNRDL 791

Query: 230  SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              F      + A  ++ I ++G+ K+AD +L  +    +   ++ Q+ G+  ++  +  G
Sbjct: 792  PEFATFAEAAMAHQLQ-IVTYGEHKDADVRLLSF----DHGEVQAQVLGEPFQLRLNAPG 846

Query: 290  YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             HM  + +  L  +  +   +  A++  + F P  GRG  +   +  G F LIDE+Y+AN
Sbjct: 847  RHMGASAVAALAALQAMRLKLAAAVEPFAQFEPPGGRGALHTIHIGGGSFKLIDETYDAN 906

Query: 350  PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            P+SM+AA+ +LSQ +P    RR+A+LGDM E+G  +Q  H+DL   L       V L G 
Sbjct: 907  PSSMRAALELLSQ-APCEPARRVAILGDMQELGPAAQRHHLDLEPELLASQPDRVLLCGP 965

Query: 410  HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + AL   +   +  H+   +  L   +   L  GD V+ KSS   G  RL  +L 
Sbjct: 966  LMRALHARIRTKVRSHWFVDVSDLSTALGGLLQPGDWVLAKSSAGVGLSRLARVLK 1021


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 173/475 (36%), Gaps = 51/475 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++L+ I   +     +  V GI  DSR + P   F AIKG   DGHDFI   ++K   L+
Sbjct: 8   EILKTIITKNGINWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVIEKKPALI 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V   +     G   +    V D   AL             K ++I +TG+ GKTT   ++
Sbjct: 68  VAEEERP---GIFGVNHLLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGKTTVTHLV 124

Query: 127 TIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPV-----DVDFGIFELGMS 170
           T  L S       IG+  N I              L+L R+       +V     E+   
Sbjct: 125 TSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSH 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYD 228
            L + R L   +     V T +   HL     +E   +AK E+F+ L +   +   +N D
Sbjct: 185 ALVQKRVL--GIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKD 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + +  +          ++G  + AD   +  +  +  +   +  Q +   V    +
Sbjct: 243 DFYGQRILKEVA----HPFVTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLL 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L  +G +  L   +   +K L + +P  G   R+        F +I + Y  
Sbjct: 299 GLFNVYNILAAVGTLLTLGFSLPDIVKNLPLLNPVPG---RFELIDEGQDFAVIVD-YAH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P  ++  +     I+P   GR IAV G     G+  ++    + ++ +      +  S 
Sbjct: 355 TPDGLENILKSARAITP---GRVIAVFGC---GGDRDKTKRPKMGKISATLADITIITSD 408

Query: 409 FHVLALKDALPRSIHVHYSE----------TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A+   I   + +                         GD VV+  K 
Sbjct: 409 NPRTEDPEAIINEIEKGFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKG 463


>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 492

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/487 (19%), Positives = 167/487 (34%), Gaps = 62/487 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I   + F     I G   D H F+  AV
Sbjct: 1   MKLKELASLLLIKDTVGDMNVEITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIVVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           + E+    L             IAV T +   HL       E    K  +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDLST 233

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 TDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 290 NGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S +S+ S    G+ I V G     G+        +  +  
Sbjct: 348 FLVIVD--YAHTPDALENVLSTISEFST---GKVITVFGC---GGDRDTKKRSIMGGIAG 399

Query: 398 LYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +         +  ++    ++ +++Y   +D         +     D+
Sbjct: 400 SYS-DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAITHAINMASSNDI 458

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 459 VLIAGKG 465


>gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 463

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/406 (23%), Positives = 150/406 (36%), Gaps = 53/406 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACIGSYNNHIGVPLTLARMPV 158
                 ++A+TGS GKT+ K +L   L    +      YA  G+ NN IG+PL +   P 
Sbjct: 57  RDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPD 116

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D D  I+E+G    G+I +LT + +PH+A++  IAPAHL     +  +A  K  I+  L 
Sbjct: 117 DADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALP 176

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             G   +N DD+F    + +  +  +  + +  +G   +A+   R+ +     +   +  
Sbjct: 177 ADGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVT 236

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++     G H   N L   G+       +      L+   P  G   R       
Sbjct: 237 PQGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAG---RQIAQTLP 293

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LID+SYNANP S+ AA            G    VLGDM E+G    + H       
Sbjct: 294 NGAVLIDDSYNANPGSLDAA----IDALAAAPGEGWLVLGDMRELGAEGVALHAAAGRRA 349

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--------------- 441
               +  ++  G    A   A      V    T   L   +Q+ L               
Sbjct: 350 RAAKLQRLYALGELSAAAAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHAS 407

Query: 442 ---VDGDV-------------------VVVKSSNSCGFYRLINLLL 465
               +  V                   ++VK S      R++  LL
Sbjct: 408 GNTQEHAVNQEQQSPSVAALSGAAPITILVKGSRGSAMDRVVTALL 453


>gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
 gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
          Length = 495

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 102/481 (21%), Positives = 179/481 (37%), Gaps = 55/481 (11%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +L Q I    I G +    ++ ++ DSR + P   FF I G   DGH F   A +KGA  
Sbjct: 5   ELAQLIYLKKIEGNLSGVTIDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKGAVA 64

Query: 68  VVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            V +  +   +G    PV  V DV  + AL              +I +TG+ GKTT   M
Sbjct: 65  FVASKSIKNQVGDT--PVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTVTHM 122

Query: 126 LTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDV-----DFGIFELGM 169
           +   L    K  A IG+    I              LTL     ++     +  + E+  
Sbjct: 123 IDALLEKPNKPTALIGTIYRKIGPKIIQTHNTTPEILTLHETFQELKEIGGETCLMEVSS 182

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGT 222
             L   R     +     V T +   HL     +E+ A AK+ +F  L        K   
Sbjct: 183 HALQLGR--VWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKPKV 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSM 281
             LN DD  F++ +  +       + S+G ++ ADF+    +  +  +  E+ +Q  +  
Sbjct: 241 AVLNADDEQFQMFEYSTPV----QVISYGINEEADFKAENIRTENGHTIFELVIQNDERY 296

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     NML  + +  +    ++  +K +  F    G   R +       F +
Sbjct: 297 LVDMPLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAG---RMQSVDKGQDFQV 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + +   P  ++  +  L+QI     G+ I V+G     G    S   +L  +    + 
Sbjct: 354 IVD-FAHTPDGLENVLDSLAQIP---HGKIITVVGHSG--GNRDSSMRPELGRIALTKSD 407

Query: 402 SHVWLSG----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V+ +       ++ + + L      +S+     +  +            GD+V++  K
Sbjct: 408 HVVFTADNPRTEPLVNIYEGLLSAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 495

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 166/478 (34%), Gaps = 49/478 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  +    +       +  ++ DSR++     F  +KG   DGH F+  A +KGA 
Sbjct: 5   LASLLALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             +V  + V +     + +  V D   A+  +          K  +I +TG+ GKTT+  
Sbjct: 65  AALV--EDVPAEVPQGVTLIKVADTREAMELVTPYFYDYPGRKLRMIGVTGTNGKTTSTN 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFELG 168
           ++ + L         IG+ N  I   +T                 A      D+ + E+ 
Sbjct: 123 IIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIF 224
              L   R     +    AV+T I   HL     +E    AK+ +FE L    +      
Sbjct: 183 SHALALKR--VAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD    +++ ++ A     + ++G+  + D     +    +   + +      M++ 
Sbjct: 241 FNMDDPSSAIIRERTKA----NVLTYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMDLE 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N++  +G +     D D     L  F    G   R++       +T+I +
Sbjct: 297 LKITGEFNVYNVMGVIGAMLAENIDKDIIGSVLDGFDGVPG---RFQLVEAGQPYTVIVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y   P  ++  +     I+    G+   V G   +     +     LA  L+   +   
Sbjct: 354 -YAHTPDGLENVLKTARSIT---RGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTS 409

Query: 402 ------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +      AL++ +P   HV           +  +   D DV+++  K 
Sbjct: 410 DNPRTEDPELIIDEIFTALQN-VPAGKHVTRLSDRREAICYALAEAADNDVILIAGKG 466


>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 493

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 97/487 (19%), Positives = 170/487 (34%), Gaps = 62/487 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAV 61
               +L   +            + G+ +DSR I     F  + G +    D H F+  AV
Sbjct: 1   MKLKELTSLLLIKDTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        +VD+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           + E+    L             IAV T +   HL      +E    K  +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLST 233

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 TDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 290 NGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +  
Sbjct: 348 FLVIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAG 399

Query: 398 LYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +  +         ++    ++ +++Y   +D         +     D+
Sbjct: 400 SYS-DFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDI 458

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 459 VLIAGKG 465


>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 483

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 178/477 (37%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D   A+ K+         SK T+I +TG+ GKT+ 
Sbjct: 60  AVAVVTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ML   L         +G+  N I              L L  +        V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         IAV T ++  HL     +EE A  K+++F+  +      +N
Sbjct: 177 VSSHSLALNR--VDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKSAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S A     + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 233 IDDKYSSMMIESSKA----KVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+ +ID  Y
Sbjct: 289 IPGIFSVYNALAAITVADFLGISLRSVREA---LSQVTVKGRFELVETGKDFYVIID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I + G     G+  ++    + EV   Y      L
Sbjct: 344 AHTPDGIQNIMEALKEYKT---GRKILLFGA---GGDRDKTKRPLMGEVAGKY-ADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKG 453


>gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 328

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 95/324 (29%), Positives = 149/324 (45%), Gaps = 12/324 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G       +G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDALLVGG--DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEREVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL   GT  LN +D  F + + ++   G
Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRA---G 231

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F      AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 232 DRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEG 325
               +   ++  +  L+   P +G
Sbjct: 292 AGCAMGVPLEGIVTGLNNVQPVKG 315


>gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 523

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 168/468 (35%), Gaps = 52/468 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +   P   ++ ++IDSR + P   FFA+ G   DG+ F+  A+ +GA  V+  +    
Sbjct: 42  KLLKGQPDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVDEAISRGAVAVI--SSQAR 99

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              S  +    VD+    L  ++ A         +++ ITG+ GKTT   ++   L+++ 
Sbjct: 100 RFRSAKVAYLTVDNPRLVLAAVSRAFYDHPDKDLSLVGITGTNGKTTVAYLVKQILANLG 159

Query: 135 KTYACIGSYNN----------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           + Y C+G+                   H    L       +    + E+    + +  F 
Sbjct: 160 QRYGCLGTVGYDLVRRTVPSFRTTPESHDLCGLLSQMRDFECRGAVMEVSSHGIDQ--FR 217

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFEL 234
              +   +     +   HL     +E   + K   F G    L K     +N DD + + 
Sbjct: 218 VSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGESGPLPK--VAVVNIDDPYGKR 275

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L ++        I +FG+++ A F+  + +  SE S            V    +G +   
Sbjct: 276 LVSEIPEQVA--ILTFGETEGAAFRASEIELSSEGSEFRFTTPLGDFAVKTSLVGDYNVS 333

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L I S L  +++  I+ L  F    GR ++       G    +   Y     +++
Sbjct: 334 NTLAALTICSGLGLNIENCIEDLDSFPGIPGRMQKVE----AGQAATVLVDYAHTEDALQ 389

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410
            A+S+L  ++    G+   V G         +     +A  L+       W +  +    
Sbjct: 390 NALSMLQGVTV---GKLRVVFGCGGNRDRGKRPAMTKVANTLA----DEAWATSDNPRNE 442

Query: 411 -----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +K+ L     VH+             +   GD +++  K 
Sbjct: 443 QVEDIFADMKEGLVDPERVHFVPDRRRAIELALEASHAGDCLLIAGKG 490


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 199/467 (42%), Gaps = 25/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           MN  +T   + +      IG      +  I+ DSR I      AF AI      G  FI 
Sbjct: 1   MN--YTVQHIAEITNAQIIG-DGNLLIKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIE 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+ +G  +++            +I    V++ +  L KLA      S    I ITGS G
Sbjct: 58  SAMDRGIKVIISEHHYP---EFENITWIIVENSVAFLQKLAKYHFENSHLQSIGITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L +   T     S+N+ IG+PL+L ++      GIFE+G+S   E+  L
Sbjct: 115 KTILKEWLYQCLWNEFPTVKSPKSFNSQIGLPLSLLQINDSHQLGIFEVGISKPHEMEKL 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            ++  P I ++T I  AH +NFS  EE+   K  +F+  E    I  N D+   +  +  
Sbjct: 175 ENIFHPQIGLLTHIGTAHAANFSSEEELIDEKIRLFKNSE---VIIYNGDNDLVD--QKI 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            ++   K + ++G  K     ++      E   + V+  G+ +    H        N + 
Sbjct: 230 KNSYSDKKLIAYGFKKENQVFIKSNISKDEN--IIVEYFGEEISFPAHQRDEATLTNAMA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + ++  L  +    ++ +++    E    R           +I++S+N +  S+K A+ 
Sbjct: 288 LITVLKELNIENKKIVEKINLLKAVE---MRLEAIEGNKGNIVINDSFNLDLDSLKTALQ 344

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L++   + + ++  VL D+  +   ++  + ++AE+++  N   V+L G  +    +  
Sbjct: 345 FLNE---YNKAKKSLVLTDIVGVSTNAKELYEEVAELVNDQNFDSVFLIGNEISKFSELF 401

Query: 419 PRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +  + +T + +    +     +  ++++K +      +L ++L
Sbjct: 402 KAKTYT-FIDTKELIESKHLTEI--ENQIILLKGARKFEIEKLKDIL 445


>gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 95/324 (29%), Positives = 149/324 (45%), Gaps = 12/324 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFRELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEREVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++   G
Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---G 231

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F      AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 232 NRNVLTFALTDSAADVYASELSRDARGCPGFIINSPLGNARVQLNLLGTHNVSNALAAAA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEG 325
               +   ++  +  L+   P +G
Sbjct: 292 AGCAMGVPLEGIVTGLNNVQPVKG 315


>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
 gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
          Length = 486

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 169/477 (35%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+ I+  S+       V  +  DSR +     F  IKG   DGH +I  A +KG
Sbjct: 1   MKLNHILEGIEVLSVVGNEDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A + ++  D+        +    V+D    + K+A         K  +I +TG+ GKT+ 
Sbjct: 61  ARVFLIQDDVDFKEDCTYV---KVEDTRKTMAKVAANFCEHPADKFDVIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARM-----PVDVDFGIFE 166
              +   L +  K    IG+            N+     + L ++         D    E
Sbjct: 118 TTFINEILRNCNKKVGLIGTIKIFDGDNEVPSNSTTPESVDLQKIFKRMVDNGCDCCAME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         I + T + P HL     +E    AK ++F   + T    +N
Sbjct: 178 VSSHSLELSR--VDDTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFH--KTTQANIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +      L     Y++G   +ADF  +  K  +      +     + ++   
Sbjct: 234 VDDEGGRKIYEAIKGLDT-PCYTYGIEHDADFTAKNIKSDASGVAYTLVTPNHTEDIFIP 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L  D +  + +L       G   R+    N    ++I + Y
Sbjct: 293 VPGKFTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAG---RFETVPNDKGISVIVD-Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++  ++   +     EG  IAV G   +     +     + + LS   I     
Sbjct: 349 AHTPDALENVLNTAREF---VEGDLIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIITNDN 405

Query: 402 -----SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + +    +LA  D    +  V   +  + +   I+S+   GDV+++  K 
Sbjct: 406 PRTEDPELII--KDILAGLDESNENYKV-VMDRKEAIKEAIESA-KKGDVILIAGKG 458


>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
 gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
          Length = 483

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 178/477 (37%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   + G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VVV+ ++    G   I    V+D   A+ K+A        +K T+I +TG+ GKT+ 
Sbjct: 60  AIAVVVDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ML   L         +G+  N I              L L  +        V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   +     IAV T ++  HL     +EE A  K+++F+  ++     +N
Sbjct: 177 VSSHSLALKR--VNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S A     + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 233 IDDKYSSMMIESSKA----KVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+  ID  Y
Sbjct: 289 IPGLFSVYNALAAITVADFLGISLRSVREA---LSQVTVKGRFEPVETGKDFYVFID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I + G   +   + +     + E+   Y      L
Sbjct: 344 AHTPDGIQNMMEALKEYKA---GRKILLFGAGGDRDRIKRPL---MGEIAGKY-ADFCIL 396

Query: 407 SGFHVLA---------LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + ++       E       +   +    DV+++  K 
Sbjct: 397 TSDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKG 453


>gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
          Length = 491

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 163/453 (35%), Gaps = 47/453 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  DSR + P + F AI G  YDGHDFI  A   GA ++V   ++   +   +     V
Sbjct: 26  QVRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHERELTDYLEKPT--YIRV 83

Query: 89  DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D   A  +L             +I +TG+ GKTTT  ++     +  +    I +    
Sbjct: 84  TDSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAGEPCGLISTVEYR 143

Query: 147 ----------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                           I  PL        +     EL    L + R   +  R   A+ T
Sbjct: 144 DGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQGRI--NGARFRTAIFT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +   HL     +E    AK   F   L   GT  +N DD F + L   +  +  +   +
Sbjct: 202 NLTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRL---ARDISGRQQVT 258

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG +  AD+ +   +  +E S   +  + ++ +V  + IG H   N+   +         
Sbjct: 259 FGMTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILAALDYGLK 318

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +    AL+      GR + +R +       +    Y     ++K  + +L +I+   +G
Sbjct: 319 PEAISHALNRPIRVPGRLEPFRASPEG---PVFYVDYAHTDDALKNVLEILRKIT---KG 372

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           + IAV G     G+  +S    + +  + Y   H+ L+  +  +         +   +P 
Sbjct: 373 KLIAVFGA---GGDRDRSKRPRMGKAAAQY-ADHLILTSDNPRSEEPQKIIDEIAAGIPA 428

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                             +    GDVV++  K 
Sbjct: 429 GTSFETEPDRAQALRRAVAVARPGDVVLIAGKG 461


>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 486

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 175/475 (36%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I   SI       VN I+ DSR     + F  +KG   DGH +I  A++ G
Sbjct: 1   MNLKSILKGIDYESIQGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V+  D    I   +I +   +D   AL  +         SK  II +TG+ GKTTT
Sbjct: 61  AKVIVIQDD--IEIKDENITIIKCNDTRKALALMGANYYDNPSSKIKIIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L    K    IG+  N IG                       +   V++ + E
Sbjct: 119 AFMIKHILEESNKKVGLIGTIANFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +   + + T +   HL      E    AK ++FE    +    +N
Sbjct: 179 VSSHSLALDR--VYGIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFER---SRIKIVN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   + +  + L    IYSF     +DF+    +  S +   ++ L+ +  + V +
Sbjct: 234 VDDNYGRQVISDLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLK-EDEQFVLN 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +     L   +      +       GR +R     N G+  +ID  Y
Sbjct: 293 IPGEYNIYNALGAIAACFKLGMPIKDIKSGIENV-VVLGRCERVAKEYNLGYEIIID--Y 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +      +   +GR I+V G     G+  +    ++ + +S        +
Sbjct: 350 AHTPDGLENILKTAKAFT---KGRLISVFGC---GGDRDKVKRPEMGK-ISTDIADITIV 402

Query: 407 SGFHVLALK--------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  + +        +A     +    E             +D DV+V+  K 
Sbjct: 403 TSDNPRSEEPLSIIKDIEAGIDKDNYFVIENRKEAIKKSIDIALDNDVIVIAGKG 457


>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
 gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
          Length = 483

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 162/471 (34%), Gaps = 40/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ ++   I       VN I  DSR +   + F AI+G + DGH FI  A++ G
Sbjct: 1   MKLIQILKGLEYKKISGTLDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A +++ + +      S       V++   AL            ++  +I ITG+ GKTT+
Sbjct: 61  AKVIICSKNTEFYENST---YIKVENTRKALAIMASNFYGNPSNEIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L         IG+  N I              L L  M       ++++ I E
Sbjct: 118 TYMIKSILEHAGCNTGLIGTIANFIGEKKIKAERTTPESLELQEMFKKMNDKNIEYCIME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + ++    + T +   HL      E    AK  +F   + +    +N
Sbjct: 178 VSSHSLSLDR--VYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMFHNAKNS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +         K   ++   + AD         S  +  ++  +   + +   
Sbjct: 233 IDDFYGDRMLKDIPKTSTK--ITYSTERQADLFAENIVNHSRGAEFDLIYKETMIHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L +          ++   + L       GR +      N GF  ++D  Y
Sbjct: 291 IPGIYNVYNALCSAAACLEEGISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVD--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  ++     +   +GR I+V G   +  +  +     +   LS   I  S  
Sbjct: 348 AHTPDGLENILNTAKDFT---KGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAIITSDN 404

Query: 405 WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +  + D +      +    E                DV+VV  K 
Sbjct: 405 PRTEEPMSIIDDVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKG 455


>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
          Length = 492

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/487 (19%), Positives = 168/487 (34%), Gaps = 62/487 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I   + F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+   +     P   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIEM-----PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           + E+    L             IAV T +   HL       E    K  +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDLST 233

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 TDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 290 NGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +  
Sbjct: 348 FLVIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDTKKRSIMGGIAG 399

Query: 398 LYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +         +  ++    ++ +++Y   +D         +     D+
Sbjct: 400 SYS-DFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDI 458

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 459 VLIAGKG 465


>gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli GR56]
          Length = 247

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 140/247 (56%), Positives = 179/247 (72%), Gaps = 1/247 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+  EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTDDMIAAMAGRPFGTLPEG-ITGISIDSRSISSGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGKLGLASRERSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQVLSPSGKVHASVASFNNHWGVPLTLARMPGDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTI 247
           +LGI+ I
Sbjct: 240 SLGIEHI 246


>gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 483

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 176/477 (36%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D   A+ K+         SK T+I +TG+ GKT+ 
Sbjct: 60  AVAVVTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ML   L         +G+  N I              L L  +        V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         IAV T ++  HL     +EE A  K ++F+  +      +N
Sbjct: 177 VSSHSLALNR--VDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFKMAKSAS--VIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  ++   S A     + ++G    A    +  +        +VQ++ K  E+   
Sbjct: 233 IDDKYSSMMIESSKA----KVLTYGIKDFAYVMAKDIRNSLSGVKFKVQIEDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +A         +G+       + F+ +ID  Y
Sbjct: 289 IPGIFSVYNALAAITVADFLGISLRSVREA---LSQVTVKGRFELVETGKDFYVIID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L +      GR+I + G     G+  ++    + EV   Y      L
Sbjct: 344 AHTPDGIQNIMEALKEYKT---GRKILLFGA---GGDRDKTKRPLMGEVAGKY-ADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKG 453


>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
 gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
          Length = 482

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 172/475 (36%), Gaps = 51/475 (10%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               +L+Q I    S+       +  I  +S+ I     F AI G +YDGHDFI  A+++
Sbjct: 1   MNAQELIQIIPDILSVKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALER 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GAG+V+       ++         V D   AL             K  +I +TG+ GKTT
Sbjct: 61  GAGVVIGEK----ALDLGGKLYIRVKDSRKALALSSAWFYGYPADKLKLIGVTGTSGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARM-----PVDVDFGIF 165
              +++  L  I      IG+             +     L L ++       ++++   
Sbjct: 117 VTYLISEMLKDIGICTGIIGTIGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   R     ++  + V T +   HL      E+  ++K ++F     +    +
Sbjct: 177 EVSSHSLKLQR--VEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQ---SKQAVI 231

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + L +  +       Y++G  K AD +    +  +     ++  + K   V +
Sbjct: 232 NIDDESGKRLLSIINIPR----YTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFY 287

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +     L   +D  I  L       GR +      NQG   ++D  
Sbjct: 288 STPGLFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELVE--NNQGIIVIVD-- 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  +K   +VL  I     G+ I V G     G+  +     + ++ S  +   + 
Sbjct: 344 YAHKPDGLK---NVLLTIREFCTGKIITVFGC---GGDRDKGKRPIMGKISSELSDYTII 397

Query: 406 LSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            S         A+ + +   I     E +      I+ ++     GD V++  K 
Sbjct: 398 TSDNPRSEKPEAIIEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKG 452


>gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 483

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/473 (20%), Positives = 175/473 (36%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +Q    G V    V  ++ DSR +   + F A KG  YDG+DF   A+  G
Sbjct: 1   MDLKELLHGVQAKIYGKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  +  +         LS+      ++  L A           SK   I +TG+ GKTT 
Sbjct: 61  AIAIASSLYNPF----LSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             ++   L S +K    +G+  + +G               +   LA M       +  +
Sbjct: 117 TCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVV-M 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S +G             AV+T I   HL      E   +AKA++F  +  +G + +N 
Sbjct: 176 EVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLVPPSGMVVINT 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D  +       + A     + ++G    AD++    +  S  +   +    + +      
Sbjct: 236 DSPYASQCIESAKA----PVITYGIESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSF 291

Query: 288 IGYHMAQNMLMTLG-IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           IG +   N+L  +  + + L  D++  ++ + +  P  G   R    L       ID  Y
Sbjct: 292 IGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPG---RLDPVLMGPCPVYID--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ L ++ P   GR I V G     G+  +S    +A+V+  Y  + V  
Sbjct: 347 AHTPDALDNVLTGLHELLPE-GGRLIVVFGC---GGDRDRSKRKLMAQVVERYGFAVVTS 402

Query: 407 SGFHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                   +D +       YS+             +  S   D D+V++  K 
Sbjct: 403 DNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKG 455


>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 499

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 170/485 (35%), Gaps = 62/485 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L   +            + G+ +DSR I   + F     I G   D H F+  AV+ 
Sbjct: 10  LKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKN 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GKTT
Sbjct: 70  GAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
           T  ++   LS        +G+    +             P TL R        + D+ + 
Sbjct: 125 TSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----- 220
           E+    L             IAV T +   HL      +E    K+ +F  L        
Sbjct: 185 EVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTID 242

Query: 221 -GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD   E  K  + A     + ++G    AD Q +      +     V     
Sbjct: 243 KKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ F 
Sbjct: 299 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEI--IDENQDFL 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P +++  +S +S+ +   +G+ I V G     G+        +  +   Y
Sbjct: 357 VIVD--YAHTPDALENVLSTISEFA---KGKIITVFGC---GGDRDAKKRSIMGGIAGSY 408

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVV 448
           +   V+++  +         +  ++    ++ +++Y   +D         +     D+V+
Sbjct: 409 S-DFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 449 V--KS 451
           +  K 
Sbjct: 468 IAGKG 472


>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
 gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
          Length = 484

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 174/471 (36%), Gaps = 50/471 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL  I+ +++       +  I  DSR + P   F AI+G   DGH FI  A+  GA  VV
Sbjct: 6   LLNDIEYYTVNGDVHLDIKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVV 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLT 127
           V  D+    G   + V  V+D   +L  L+ A       +  +I +TG+ GKT+   M+ 
Sbjct: 66  VTRDVPLPDG---VSVVKVEDSRLSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVK 122

Query: 128 IALSSIKKTYACIGSYNNHI--------------GVPLTLARMPVD--VDFGIFELGMSH 171
             L    +    IG+  N I                   L R   D  +   + E+    
Sbjct: 123 SILEQSGRKVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEVSSHS 182

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R      R  I + T +   HL   S +++  +AK ++F+    +G I  N DDS+
Sbjct: 183 LALNR--VAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQN---SGLIATNVDDSY 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              LK        KT+Y++G  + A          ++ S  ++ + G    V+ +  G  
Sbjct: 238 GVKLKDM---FVSKTVYTYGIEREAHVTASNILSDAKGSTFDIDICGDRRPVIINIPGRF 294

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        +    D   K L       G   R+        FT+I + Y   P 
Sbjct: 295 SVYNALAAAAACYAMGVSADDISKGLQALKSVPG---RFEVLGTDTDFTVIID-YAHTPD 350

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
            ++  +  +  I+   +GR IA+ G     G+   +    + E+   Y    +  S    
Sbjct: 351 GLENILKSVKDIA---KGRVIALFGC---GGDRDAAKRPIMGEIGGRYADFCILTSDNPR 404

Query: 409 -FHVLALKDALPRSIHVHYS-----ETMDGLFLFIQSSLVDGDVVVV--KS 451
               +A+   +   I   +      E       +   +    D++++  K 
Sbjct: 405 SEDPMAIIRQIEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKG 455


>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
          Length = 492

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 168/487 (34%), Gaps = 62/487 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I     F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--- 220
           + E+    L             IAV T +   HL      +E    K+ +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 233

Query: 221 ---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 IDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 290 NGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S + + +   +G+ I V G     G+        +  +  
Sbjct: 348 FLVIVD--YAHTPDALENVLSTIREFA---KGKIITVFGC---GGDRDAKKRSIMGGIAG 399

Query: 398 LYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +         +  ++    ++ +++Y   +D         +     D+
Sbjct: 400 SYS-DFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDI 458

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 459 VLIAGKG 465


>gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 462

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 100/401 (24%), Positives = 164/401 (40%), Gaps = 15/401 (3%)

Query: 62  QKGAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KG  LV+ +           +  V  V  V  A        R   +  ++A+TG+ GKT
Sbjct: 59  RKGPSLVISDKPATELKNALDNTTVLHVKSVAQAYWTFIEYYRGLFQIPVVALTGTCGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML    S   +  A + S N        L  +       IFELG+ + G I+    
Sbjct: 119 TTKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGLGNTGNIKHQCM 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +IT I   HL     +E    AKAEI EG+   GT+ +N DD+  E +  +  
Sbjct: 179 IYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGTLLINADDANIEKISLQKF 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  FG   +AD++    +         +++      V   G G H   N L  +
Sbjct: 239 K---GKIIRFGLQDSADYKASAIEFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAI 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              S +   +  AI  L  F       +        G  T+ID+++  NP S++AA+ VL
Sbjct: 296 AACSEMGLSIRQAIAGLRTFKQMA---RHLEFTKGIGDSTIIDDTWTNNPTSVEAALKVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +      + I VLGD+  +G   + +H ++   ++   I  +   G    A+ D   +
Sbjct: 353 DTVGKEK--KVILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITIGKRAEAIADQAKK 410

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSC 455
                 VH  + + G+   ++  L    +V++K    S S 
Sbjct: 411 DGTKAEVHTFKDVTGVLEILKPKLDADTIVLIKGPMSSRSM 451


>gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
 gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
          Length = 508

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/480 (22%), Positives = 180/480 (37%), Gaps = 47/480 (9%)

Query: 7   FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             DL+ A+        G   +  + G++ DSR++ P   F A++G   DGH FI  A++ 
Sbjct: 13  LDDLVAALGALAERRGGDGARAVITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEA 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  V    + + +  S S+    V D   AL +L+ A       K  +I +TG+ GKTT
Sbjct: 73  GAVAVAC--EELPAAYSDSVTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTT 130

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDF--GIF 165
           T  ++T  L++       IG+    IG                  L R  VD      + 
Sbjct: 131 TARLVTSMLNASGVAAGYIGTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVM 190

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   R   H +    AV T + P HL     +EE A AK  +F+ L   G   +
Sbjct: 191 EVSSHSLVLDR--VHGLFFRAAVFTNLTPEHLDFHETMEEYAEAKRLLFDQLNAEGFAVI 248

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSM 281
           N DD   E + A+     +    +   +   D    F         E S  +V   G+SM
Sbjct: 249 NADDPRAEFMAARLAPERVFCCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSM 308

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G +   NML    +   L  D  TA+++L+      GR +R     ++     
Sbjct: 309 AMQVPLPGAYNVMNMLEAFTVGVGLGIDPATALRSLAAADAIAGRMERI---WSRDRSRC 365

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++ A+  L  ++P  + +   V G     G   +    ++  + +    
Sbjct: 366 AVVDYAHTPDALQKALEALRAVTPA-DAKLAVVFGC---GGNRDRQKRPEMGRIAAEL-A 420

Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KS 451
             V L+       +  A+ D +   +                     L  GD+++V  K 
Sbjct: 421 DRVILTSDNPRDENPEAILDEVEAGMAGRVHLRIADRAEAIRRAVEQLGAGDILLVAGKG 480


>gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
 gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
          Length = 529

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 155/385 (40%), Gaps = 22/385 (5%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            +     L  PV    +           A  R    I+ ITGS GKT+TK +L   L+  
Sbjct: 148 WMMVATGLMTPVERRINNRFLRAAREKLA-QRPDLIIVGITGSYGKTSTKFILGTLLTQK 206

Query: 134 KKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                   SYN  +GV   +  R+  + +  + E+G    G+IR L  LV P I V+T +
Sbjct: 207 FNVLVTPDSYNTPMGVCRVVNERLKPEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAV 266

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG- 251
            P HL  F  +E +A  K E+ + L   G   +NYD+ +   L  ++  +    +  +G 
Sbjct: 267 GPVHLETFGSVEAVARTKYELIKSLPPDGLAVMNYDNPYCRELAKETRHV---QVEGYGL 323

Query: 252 KSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +S  A   +       + +   +  +  G+S       +G H   N+L  + +   L   
Sbjct: 324 ESPGARLVVSDVHVSEKGTTFVLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLS 383

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +      +    P   R +  R     G   +ID+++N+NP   + A+ VLS  S    G
Sbjct: 384 LRQIAAGIGQLQPVPHRLQLIRS----GGVYVIDDAFNSNPTGTEVALEVLSGFS----G 435

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIHV 424
           R++ V   M E+G   + ++ +  + ++     HV L G          L D       V
Sbjct: 436 RKVVVTPGMVELGGEEERYNREFGQRMAQV-CDHVILVGPERTKPIAAGLLDGGLPRDRV 494

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
               +++     +Q  L  GD V+ 
Sbjct: 495 SVVTSLEEATAVLQQLLRPGDAVLF 519


>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 492

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 168/487 (34%), Gaps = 62/487 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAV 61
               +L   +            + G+ IDSR I     F  + G +    D H F+  AV
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L    S        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLLEKIFSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           + E+    L             IAV T +   HL      +E    K  +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLST 233

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +     LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 TEKKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIHFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     + S     EGR +      NQ 
Sbjct: 290 NGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +  
Sbjct: 348 FLVIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAG 399

Query: 398 LYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +         +  ++    ++ +++Y   +D         +     D+
Sbjct: 400 SYS-DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDI 458

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 459 VLIAGKG 465


>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 483

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/471 (21%), Positives = 172/471 (36%), Gaps = 39/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+++    I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLGYSFIKED-KKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL                II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEELSYYKDCTIIKVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    A+ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  KN D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL+      GR +      N G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVD--Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  ++   + +   +GR I+V G   +     +     +   LS   I  S  
Sbjct: 349 AHTPDGLENILNTAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDN 405

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +    L +KD L      +    E              + DV+VV  K 
Sbjct: 406 PRTEDPTLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
          Length = 493

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/487 (19%), Positives = 169/487 (34%), Gaps = 62/487 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I     F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  ++   LS        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           + E+    L             IAV T +   HL      +E    K+ +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLST 233

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 TDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 290 NGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKSIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +  
Sbjct: 348 FLVIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAG 399

Query: 398 LYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +  +         ++    ++ +++Y   +D         +     D+
Sbjct: 400 SYS-DFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDI 458

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 459 VLIAGKG 465


>gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae CWL029]
 gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae J138]
 gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae TW-183]
 gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           J138]
 gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 483

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/473 (20%), Positives = 177/473 (37%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +Q    G V    V  ++ DSR ++  + F A KG  YDG+DF + A+  G
Sbjct: 1   MDLKELLHGVQAKIYGKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  +  +         LS+      ++  L A           SK   I +TG+ GKTT 
Sbjct: 61  AIAIASSLYNPF----LSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             ++   L S +K    +G+  + +G               +   LA M       +  +
Sbjct: 117 TCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVV-M 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S +G             AV+T I   HL      E   +AKA++F  +  +G + +N 
Sbjct: 176 EVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPSGMVVINT 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D  +       + A     + ++G    AD++    +  S  +   +    + +      
Sbjct: 236 DSPYASQCIESAKA----PVITYGIESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSF 291

Query: 288 IGYHMAQNMLMTLG-IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           IG +   N+L  +  + + L  D++  ++ + +  P  G   R    L       ID  Y
Sbjct: 292 IGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPG---RLDPVLMGPCPVYID--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ L ++ P   GR I V G     G+  +S    +A+V+  Y  + V  
Sbjct: 347 AHTPDALDNVLTGLHELLPE-GGRLIVVFGC---GGDRDRSKRKLMAQVVERYGFAVVTS 402

Query: 407 SGFHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                   +D +       YS+             +  S   D D+V++  K 
Sbjct: 403 DNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKG 455


>gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
 gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
          Length = 306

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 16/317 (5%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP + +  I E+GM H  EI FL++L +P +A IT I  AH+ N      IA AK EI +
Sbjct: 1   MPDETEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVD 60

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           GL K G++F+  D+   E L  K      + + +FG S+ +  Q     +  EQ+  ++ 
Sbjct: 61  GLAKDGSLFVPSDEPLLEPLVEKV----TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS 116

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                M       G +   N L+ +GI            K L+     + R +  + A  
Sbjct: 117 --DTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAA-- 172

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++ + YNANP +M   +   S++S    G+RIAVLGDM E+G  S + H  +A+ 
Sbjct: 173 -NGAEILSDVYNANPTAMGLVLDSFSKMSKV--GKRIAVLGDMLELGPDSAAMHQAMAQH 229

Query: 396 LSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           L+   I  V+L G  +  L D L       +IH    E  + L   ++  L   D+VV+K
Sbjct: 230 LAPDAIEEVFLYGSEMAYLADKLQETYASANIHSFKKEEKNELIEAVKKVLQPEDMVVLK 289

Query: 451 SSNSCGFYRLINLLLEE 467
            SN  G   +I+ LLE+
Sbjct: 290 GSNGMGLREVIDALLEK 306


>gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 460

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 182/454 (40%), Gaps = 17/454 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP-QEAFFAIKGPHYDGHDFILH 59
           M  L +   + + I G  +       ++ +   ++ +       F +    +D   FI  
Sbjct: 1   MKKL-SIGTIRKVIHGSLVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRFIKK 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +      +V +  +       +  +  V+ +  +        R +    +IA+TG+ GK
Sbjct: 59  YL---PCAIVTDRPIGHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    L    KT   + S N        L ++   V+  ++E  ++  G I+  +
Sbjct: 116 TTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAVAAPGYIKKSS 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              +P I +IT I   HL     +E    AK E+ + + + GT+ LN DD   + +  + 
Sbjct: 176 RYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADDDNIKKISLED 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I  +G  +NAD+Q    +   +     + +  K  +V   G G H   N +  
Sbjct: 236 FK---GKIIYYGVGENADYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +      +IK L  F       +  +         LI +++N NP S++A+I  
Sbjct: 293 IAAAYEVGISYRDSIKLLPSFKHLNSHFEVMK---GLNQCQLIVDTWNINPTSLEASIKT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +I+ +   ++IA++G +  +G+ S+  H  + +++  Y++  +   G     +     
Sbjct: 350 MCEIAKN--RKKIALVGSIDALGKNSRQLHQKVGDMICQYDLDVLITIGSQARYIALQCR 407

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           R+     V+   + +G+   +   +     ++ K
Sbjct: 408 RNGFKGKVYSFSSTEGVRRLLNQIVDKDTTLLTK 441


>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 483

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 173/475 (36%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSIIKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    A+ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  KN D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL       GR +      N G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++   + +   +GR I+V G   +     +     +   LS        +
Sbjct: 349 AHTPDGLENILNTAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSNLS----DIAII 401

Query: 407 SGFHVLA------LKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD L      +    E              + DV+VV  K 
Sbjct: 402 TSDNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKG 456


>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum F str. 230613]
          Length = 483

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 173/475 (36%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+++    I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLGYSFIKEY-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    A+ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  KN D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL       GR +      N G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++   + +   +GR I+V G   +     +     +   LS        +
Sbjct: 349 AHTPDGLENILNTAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSNLS----DIAII 401

Query: 407 SGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD L      +Y   E              + DV+VV  K 
Sbjct: 402 TSDNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 318

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/270 (36%), Positives = 154/270 (57%), Gaps = 11/270 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+     S      P+  V D L AL+ +A          A +IA+TGSVGKTTT
Sbjct: 64  AIAAIVSEGKYKSF-----PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ + 
Sbjct: 119 KDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L + ++  
Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHAN-- 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + + SFGK KNA+  L    +  E S +
Sbjct: 237 --RNVISFGKDKNAEVCLLNLIRNDESSVI 264


>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 1; AltName:
           Full=Meso-A2pm-adding enzyme 1; AltName:
           Full=Meso-diaminopimelate-adding enzyme 1; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
           acetobutylicum ATCC 824]
 gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum EA 2018]
          Length = 482

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 176/475 (37%), Gaps = 49/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                ++  ++   I       ++ ++ DSR +  +  FF I+G   DGHDFI  AV+KG
Sbjct: 1   MKLKKIIGDVKYELICGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V            +  V  V+D   A+  +          K  +I ITG+ GKTT+
Sbjct: 61  ADVIVCTK---VPKKLPNCTVVKVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDV-----DFGIFE 166
             M+   L S       IG+  N+I              L L ++  D+     D+ + E
Sbjct: 118 TYMMKSMLESSGYKVGLIGTIANYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +     + T +   HL      E    AK  +F+  +++    +N
Sbjct: 178 VSSHSLYLDR--VYGIVFEEGIFTNLTQDHLDFHKTFENYYKAKMILFKNSKRS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + E +   +    I    ++G ++ AD +    K  S  +  ++  +G    V  +
Sbjct: 233 IDDKYGERVFKDAGNDKI----TYGLTEKADLKAENLKMTSRGTEFDLCYRGLREHVKIN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++         ++     L+      GR +      N  F  ++D  Y
Sbjct: 289 IPGKYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLD--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +    + +   +GR I+V G     G+  ++    + E+ S  +   V  
Sbjct: 347 AHTPDGLEKVLKASREFT---KGRLISVFGC---GGDRDKTKRPIMGEIGSKLSDIAVIT 400

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +    +V      + +   +       DV+V+  K 
Sbjct: 401 SDNPRSENPEEIIKDIVQGIKTDNYVIVENRKEAIKKAML-MAKKDDVIVLAGKG 454


>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 483

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 174/475 (36%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSFIKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    A+ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  KN D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL       GR +      N G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++   + +   +GR I+V G   +     +     +   LS        +
Sbjct: 349 AHTPDGLENILNTAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSNLS----DIAII 401

Query: 407 SGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD L      +Y   E              + DV+VV  K 
Sbjct: 402 TSDNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus halodurans C-125]
 gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus halodurans C-125]
          Length = 486

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 173/473 (36%), Gaps = 53/473 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL ++ G+ +       ++ I +DSR +     FF IKG   DGHD+   AV  GA  VV
Sbjct: 7   LLDSLYGYKMIHEGNPDIHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVV 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLT 127
               +      LS+PV  V D   A+ ++         +   +I +TG+ GKTT   ++ 
Sbjct: 67  SERPL-----ELSVPVVVVRDSRRAMAQVATKFYGEPTNDLQLIGVTGTNGKTTITHLIE 121

Query: 128 IALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSH 171
             +    K    IG+    I              L L R   D     V   + E+    
Sbjct: 122 KIMQDQGKMTGLIGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHA 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYD 228
           L             +AV + + P HL     +E    AK  +F  L    +     LN D
Sbjct: 182 L--QSGRVRGCDFDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNAD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D         + A     + ++G    ADFQ    +  S  +  E+    + ME+  H I
Sbjct: 240 DPASADFAEMTIA----QVVTYGIENEADFQAENVRITSTGTTFELAAFEERMELSIHLI 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L       +    +             +G   R+    +   FT+I + Y  
Sbjct: 296 GKFSVYNVLAAAAAAYVSGVPLQEIK---KSLEEVKGVAGRFETVKHDQPFTVIVD-YAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S++  +  + +++   +G    V+G     G+  ++    +AE+ + +    ++ S 
Sbjct: 352 TPDSLENVLKTVGELA---KGDVRVVVGC---GGDRDKTKRPVMAEIATTFANQAIFTSD 405

Query: 409 --------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  ++       ++   +  + +F  I     + D++V+  K 
Sbjct: 406 NPRSEEPMDILRDMEQGAKGDSYLMIEDRKEAIFKAI-ELAKEDDIIVIAGKG 457


>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
 gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
          Length = 489

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 174/479 (36%), Gaps = 50/479 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P    H+LL    G     +P   + G+S DSR + P + F  + G   DG +F   A+
Sbjct: 1   MPAMRLHELLART-GLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAI 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
             GA  +V++ +      +  +PV  V DV+G   +LA A       K T+  +TG+ GK
Sbjct: 60  AGGAAGLVISENARGVEAA--VPVIRVPDVVGTCARLASAYYDFPARKLTLAGVTGTNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  ++   L +   T   +G+  +        AR                      +G
Sbjct: 118 TTTTHLIENLLQAQAPT-GLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYG 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L + R      R   AV T +   HL     +E    AKA +F    ++G  
Sbjct: 177 VMEVSSHALAQQR--VAGCRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPEYRSGRA 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +   L A         ++++     AD          E     +         
Sbjct: 235 VINADDPWGVRLAA-----AYDQVWTYSFQPGADIYPEDAVFTPEGIRGTLVTPVGRAAF 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  +G    L  D++     LS F    GR +R   + +     +I 
Sbjct: 290 TSPLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGRMER--VSGSDDDIAVIV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P  ++  +       P   GR I V G     G+  ++    +  + +  +   
Sbjct: 348 D-YAHTPDGLRKLLEA---TRPFVRGRLICVFGC---GGDRDRTKRPQMGRIAAELSDLP 400

Query: 404 VWLSG----FHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
           V  S      +  A+ D +   I V  S T++      +   +  +   GD VV+  K 
Sbjct: 401 VVTSDNPRTENPEAILDDILAGIPVGVSPTVEVDRRRAILQALLEA-KAGDCVVIAGKG 458


>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
 gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
          Length = 485

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 172/471 (36%), Gaps = 38/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L+ ++ + +    +  +  I  DSR+I   + FFAI+G   DGH FI  A++KG
Sbjct: 1   MKLKEVLKKLEYNILNGNIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTT 122
           A ++V +           I    V +   AL           + K  +I +TG+ GKTT+
Sbjct: 61  AKVIVFDKGFENENMYKDITFIKVKNSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTS 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L + ++  D     VD+ + E
Sbjct: 121 TFMIKSILEEAGFKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +  +  + T +   HL      E   ++K  +F+    +    +N
Sbjct: 181 VSSHSLYLDR--VYGIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINS---VIN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ E +  +      +  +++   K +D +    +  S      V  +G   ++  H
Sbjct: 236 IDDNYGERILKEIE----EKTFTYSIKKYSDLKAESVRLHSRGGEFTVDFKGNKEKINIH 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++         +    + L       GR +      N G+  ++D  Y
Sbjct: 292 IPGEYNVSNALGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVD--Y 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  +    +VL       +G+ I+V G   +     +     +   LS   I  S  
Sbjct: 350 AHTPDGLD---NVLRTARDFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILTSDN 406

Query: 405 WLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +      + D +      +Y   ++         +     DV+VV  K 
Sbjct: 407 PRTEEPFSIIDDIVKGVTKDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKG 457


>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 483

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 174/475 (36%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSFIKEN-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    A+ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  KN D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL       GR +      N G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++   + +   +GR I+V G   +     +     +   LS        +
Sbjct: 349 AHTPDGLENILNTAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSNLS----DIAII 401

Query: 407 SGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD L      +Y   E              + DV+VV  K 
Sbjct: 402 TSDNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
 gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
          Length = 500

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 170/485 (35%), Gaps = 62/485 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L  ++            + G+ +DSR I     F     I G   D H F+  AV+ 
Sbjct: 10  LKELADSLLIKDTIGNMNVEITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKN 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+     ++ IP   V D   A+            +K  +I ITG+ GKTT
Sbjct: 70  GAVALIVERDV-----NIQIPKIIVKDARYAMAIIASHFYGYPSNKIKLIGITGTNGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
           T  +L   L+        +G+    +             P  L R        + D+ + 
Sbjct: 125 TSYLLEKILTDHGFQTGLMGNNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYCVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L              AV T +   HL      EE    K  +F  L        
Sbjct: 185 EVTSQGLHM--ERVKGCNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLLFSRLGNDFSTTD 242

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD   E  K  + A     + ++G    AD Q +      +     V     
Sbjct: 243 KKIAILNADDPSVEYFKKVTSA----EVITYGIHNGADVQAKNITLSPKGIQFLVSTFNG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+  + +G     N L  + +  +    +     +LS     EGR +      NQ F 
Sbjct: 299 EKEINLNLVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEI--IDENQDFL 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        + E+   Y
Sbjct: 357 VIVD--YAHTPDALENVLSTISEFS---KGKIITVFGC---GGDRDTKKRSIMGEIAGSY 408

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVV 448
           +   V+++  +         +  ++  L ++ +++Y   +D         +     D+V+
Sbjct: 409 S-DFVYITSDNPRSEDPQAIMKDIEKGLSQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 449 V--KS 451
           +  K 
Sbjct: 468 IAGKG 472


>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
 gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
          Length = 483

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 170/472 (36%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ +    +    +  +N I  DSR I+  + F AI+G   DGH FI  A+ +G
Sbjct: 1   MKVNELLKGLNYEILNGTLELDINAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A ++V + ++        I    V +   AL  +A            +I ITG+ GKTT+
Sbjct: 61  AKVIVCSKEVEIHEE---ITYIKVQNTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L     +   IG+ +N I              L L  M       ++++ + E
Sbjct: 118 TYMIKSILELAGHSTGLIGTISNFIGNEKIKSERTTPESLELHEMFKKMKDKNIEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + +     + T +   HL      E    AK  +F+  + +    +N
Sbjct: 178 VSSHSLSLDR--VYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ E +         K   ++   K AD   +     +  +   +  + +   +   
Sbjct: 233 IDDTYGERVLNDVPDSSNK--ITYSTEKKADLFAKDIVNYARGAEFILCYKSEETHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G        ++   K L       GR +      + GF  +ID  Y
Sbjct: 291 IPGIYNVYNALCSAGACLSEGISMEDVKKGLESV-VVPGRCENATKEYDLGFDVIID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---- 402
              P  ++  +      +   +GR I+V G   +  +  +     +   +S   I     
Sbjct: 348 AHTPDGLENILETARDFT---KGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVTSDN 404

Query: 403 -HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +  + + + +  ++      + +   I      GDV+VV  K 
Sbjct: 405 PRTEEPSEIIKDVVEGIKKDNYIVVENRKEAIKKAI-EIAKKGDVIVVAGKG 455


>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
 gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
          Length = 499

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 169/485 (34%), Gaps = 62/485 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L   +            + G+ +DSR I   + F     I G   D H F+  AV+ 
Sbjct: 10  LKELANLLLIKETIGDMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEGAVKN 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GKTT
Sbjct: 70  GAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
           T  +L   LS        +G+    +             P TL R        + D+ + 
Sbjct: 125 TSYLLEKILSDYGYHTGLMGNNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L             IAV T +   HL       E    K  +F  L       +
Sbjct: 185 EVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLSTTE 242

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD   E  K  + A     + ++G    AD Q +      +     V     
Sbjct: 243 KKIAVLNADDPSVEYFKKITSA----EVITYGIHNRADVQAKNINLSPKGIRFLVSSFNG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+  + +G     N L  + +  +    +     +LS     EGR +      NQ F 
Sbjct: 299 EIEISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIEGRMEI--IDENQDFL 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +   Y
Sbjct: 357 VIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAGSY 408

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVV 448
           +   V+++  +         +  ++    ++ +++Y   +D         +     D+V+
Sbjct: 409 S-DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 449 V--KS 451
           +  K 
Sbjct: 468 IAGKG 472


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 185/463 (39%), Gaps = 13/463 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQKG 64
           F  L   + G    +     +  I IDSR+        F AIKG  +DGH+FI      G
Sbjct: 5   FSSLPTILNGEICQLQKDYTIENIFIDSRNAVSNIKNLFIAIKGERHDGHNFIADLYSNG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               +++ ++           F  ++ + AL  LA   R   K  +I ITGS GKT  KE
Sbjct: 65  IRNFIIDEEIKVD-KYPEANFFKTENSINALQALAGYKRKNFKGNLIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   + S+   Y    SYN+ +GVPL+L  +    D+ I E G+S +GE+  L  +++P
Sbjct: 124 WLAKLIESVYSVYRSPRSYNSQVGVPLSLWHLNHYQDYAIIEAGISKMGEMEKLEAIIKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I + T +  AH   F  +EE A  KA++F   + + TI    D             L  
Sbjct: 184 KIGIYTNLGTAHDEGFPSLEEKAHQKAQLF---KDSSTIIFCKDFPEISNALHSLPKLEE 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K    +    N      + +  +  + + +  + +          Y   +N+   L ++ 
Sbjct: 241 KEFIGWSFEDNTSNYFVETEGRNNGTAIRIPFEEQFHIFQVPFQDYASLENITHCLLLLL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +       +  +  +    R      +    L+D+SYN +   +  A+   SQ  
Sbjct: 301 HEGLPIKVI---QNTLNDIKSLNMRLETKKGKNSTYLVDDSYNNDLVGLDTALQFFSQQK 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +  RI +L D+ E G  S+  +  LA+ ++L  ++ V   G  +  L+      + +
Sbjct: 358 QFQK--RILILSDLLETGLSSEVLYQQLADRIALEKLNLVVGIGSEIRMLEKFYTSDLKL 415

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                      + + +     ++++K +    F  ++  L ++
Sbjct: 416 --FPNTASFLEYEKENSFQESLILIKGARKFNFESIVQRLEQK 456


>gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
 gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
          Length = 301

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 150/310 (48%), Gaps = 13/310 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           + G+ ELGMS  GE+  +  + +  +AVIT I   H+      E I   K  I +GL + 
Sbjct: 2   EIGVIELGMSEPGELTVIAGIAQIQMAVITNIGITHIEQLGSQENIFREKLSIQDGLTEH 61

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G +FLN DD   ELLK  +   G +TIY +G  +N  ++    +  +           + 
Sbjct: 62  GILFLNGDD---ELLKKTTARDGFETIY-YGTGENCHYRAVDVRLENGYPVFTAVCGDEQ 117

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    +G H   N +++L + S+    ++ A K L+ F       +  +   + G  T
Sbjct: 118 VPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAAKQLAEFTG----FQNRQQIYHTGGMT 173

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID++YNA+P SMKA + VL+ I      RR+AVL DM E+G  S  +H ++   ++ + 
Sbjct: 174 IIDDTYNASPVSMKAGLEVLNSI--EHSRRRVAVLADMKELGPDSPRYHYEIGTYIAAHP 231

Query: 401 ISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  V + G     +   +      I V+     + L  ++++ L +GD V+ K SNS   
Sbjct: 232 VDKVAVLGEPAKEIARGVREQAPHILVYEFMDREPLVEWLKTELREGDAVLFKGSNSMEL 291

Query: 458 YRLINLLLEE 467
            ++  + LE+
Sbjct: 292 GKVAAVFLEK 301


>gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
 gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
          Length = 438

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/449 (24%), Positives = 185/449 (41%), Gaps = 55/449 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR      AF A+ G    G+ FI  A+++GA  V+ +    AS    ++    V 
Sbjct: 24  LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVLTDLPGAASRLPRTV---EVP 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL   A   R +    ++ +TGSVGKTTTK  +  AL +          YN    +
Sbjct: 81  DSLAALTAWAQQERAK-NPLVVGVTGSVGKTTTKSYVAAALDAHYMPV-----YNTIPAI 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L          + E+G+  +GE+  L  LVRP + V+T+I  AHL   S +E IA  
Sbjct: 135 ACFLTEFGSSERPLVVEMGIDRVGEMDRLISLVRPDVGVLTSIGAAHLEGLSSLEVIAQE 194

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +I   L     +  N                  + IY F  +     Q         +
Sbjct: 195 KGKI---LHSPRALVGN----------QARVWFPEQEIYGFS-TPELPVQHSGQDLRVNE 240

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +   +G+++           A+  ++ L +       +  AI+ +       G    
Sbjct: 241 QGADFTYRGQTV--HLPNAAQVQAEAAVLGLYLAETYGVPLAAAIQRVEQVQVPSG---- 294

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  ++ G +T+ID++YNA+P +++AA+S L        GRRI+VLG M E+G  +   H
Sbjct: 295 -RYQIHSGRYTVIDDAYNASPLAVQAALSALQNFR----GRRISVLGTMLELGPTAPELH 349

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++            +  G +   L        H H   T+  L   +++ + DGDV++V
Sbjct: 350 AEVGRSACES-ADLCFGVGPYAELL------GHHAH--RTVPELTAALKAEVQDGDVILV 400

Query: 450 KSSNSC------------GFYRLINLLLE 466
           K+S               G   +++ LL+
Sbjct: 401 KASRGISMTPEQRAQEGVGLETVVSELLK 429


>gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 460

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 182/454 (40%), Gaps = 17/454 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP-QEAFFAIKGPHYDGHDFILH 59
           M  L +   + + I G  +       ++ +   ++ +       F +    +D   FI  
Sbjct: 1   MKKL-SIGTIRKVIHGSLVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRFIKK 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +      +V +  +       +  +  V+ +  +        R +    +IA+TG+ GK
Sbjct: 59  YL---PCAIVTDRPIGHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    L    KT   + S N        L ++   V+  ++E  ++  G I+  +
Sbjct: 116 TTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAVAAPGYIKKSS 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              +P I +IT I   HL     +E    AK E+ + + + GT+ LN DD   + +  + 
Sbjct: 176 RYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADDDNIKKISLED 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I  +G  +N+D+Q    +   +     + +  K  +V   G G H   N +  
Sbjct: 236 FK---GKIIYYGVGENSDYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +      +IK L  F       +  +         LI +++N NP S++A+I  
Sbjct: 293 IAAAYEVGISYRDSIKLLPSFKHLNSHFEVMK---GLNQCQLIVDTWNINPTSLEASIKT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +I+ +   ++IA++G +  +G+ S+  H  + +++  Y++  +   G     +     
Sbjct: 350 MCEIAKN--RKKIALVGSIDALGKNSRQLHQKVGDMICQYDLDVLITIGSQARYIALQCR 407

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           R+     V+   + +G+   +   +     ++ K
Sbjct: 408 RNGFKGKVYSFSSTEGVRRLLNQIVDKDTTLLTK 441


>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
 gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 177/481 (36%), Gaps = 55/481 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   ++ +         +  I +DSR +     FF IKG   DGHDF   AV+K
Sbjct: 1   MMKLSELTNVLRSYEWKNEGDPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA  ++        +  + +P   V D    + +LA        SK  +I +TG+ GKTT
Sbjct: 61  GAVALIAER----EVKGVEVPTIIVQDTKRTMARLANLFYGDPTSKMNLIGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIF 165
              +L   ++   K    IG+    I              +TL +     +  DV+  + 
Sbjct: 117 VTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEMVDADVETALM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTG 221
           E+    L   R         IAV T + P HL     +E    AK  +F  L     +  
Sbjct: 177 EVSSHALHLGR--VRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEGK 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN DD   + L   +       + ++G    AD      +  +  +   ++   +S+
Sbjct: 235 VAVLNRDDEAADELLKMTTV----DVLTYGVENKADIMAEDIEITARGTTFTLKAGTESI 290

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    IG     N L            ++   K+L   H   G   R+        +T+
Sbjct: 291 EIEMKLIGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAG---RFEPVDAGQDYTV 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y     S++  ++ + + +   +G+   V+G     G+  ++    +AE+ + Y  
Sbjct: 348 IVD-YAHTSDSLENVLTTVREFA---KGKISVVVGC---GGDRDRTKRPVMAEIATKYAD 400

Query: 402 SHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           + ++ S          + D     L  S +    +  + ++  I  +  D   ++V   K
Sbjct: 401 NAIFTSDNPRSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDD--ILVIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
 gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
          Length = 499

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 97/485 (20%), Positives = 169/485 (34%), Gaps = 62/485 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L   +            + G+ +DSR I     F     I G   D H F+  AV+ 
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKN 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GKTT
Sbjct: 70  GAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
           T  +L   LS        +G+    +             P TL R        + D+ + 
Sbjct: 125 TSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----- 220
           E+    L             IAV T +   HL      +E    K+ +F  L        
Sbjct: 185 EVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTID 242

Query: 221 -GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD   E  K  + A     + ++G    AD Q +      +     V     
Sbjct: 243 KKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ F 
Sbjct: 299 QIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI--IDENQDFL 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +   Y
Sbjct: 357 VIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAGSY 408

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVV 448
           +   V+++  +         +  ++    ++ +++Y   +D         +     D+V+
Sbjct: 409 S-DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 449 V--KS 451
           +  K 
Sbjct: 468 IAGKG 472


>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
          Length = 483

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 164/471 (34%), Gaps = 41/471 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I+   +       +  I  DSR++   + F  I+G   DGH ++  AV  G
Sbjct: 1   MNLKKILKEIKYELLKGNDDLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+ + D+          V   +D     AL           K  +I ITG+ GKTT+
Sbjct: 61  AAAVICSKDIENLTECT---VIKTEDTRKVLALASANYYDHPSDKLKVIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L +       +G+  N++              L L ++  +     V++ I E
Sbjct: 118 TFMMKSILEAQGYKVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V+   A+ T +   HL      E   +AK  +F+    +    +N
Sbjct: 178 VSSHSLYLDR--VYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNTLSS---VVN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + E +   S         S+   K AD +       S     ++  + ++  +  +
Sbjct: 233 IDDEYGERVYEDSEGKKT----SYAIDKVADVKGSNLHMHSRGVEFDITYKNETQHINLN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L +          + T  + L       GR +      + G+  ++D  Y
Sbjct: 289 IPGKYNVMNALGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGYEVIVD--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  +    + +   +G+ I+V G   +     +     +   LS   +  S  
Sbjct: 347 AHTPDGLENILKTAREFT---KGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVITSDN 403

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +  +K+ +      +    E                DV+VV  K 
Sbjct: 404 PRTEDPMSIIKEVVAGVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKG 454


>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
 gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
          Length = 486

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 172/480 (35%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL+ +Q +         +  I  D+R + P   F  I+G   DGHDF   A    
Sbjct: 1   MELHKLLRFLQPYMTFKGENPEITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      L IPV  V +   A+     A   +   +  +I ITG+ GKTTT
Sbjct: 57  -AKKGAAAVIAQRELDLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLA-----RMPVDVDFGIFE 166
             ++   L+   +    IG+    I              LTL           VD  + E
Sbjct: 116 SHLIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L E R   H    +IAV T +   HL     ++E   AK  +F  L      E+ 
Sbjct: 176 VSSHALDEGRI--HGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD      +  + A     + S+G  + AD +    +  S  +  ++      
Sbjct: 234 KYAILNSDDPASAEYEKSTAA----HVISYGIDQEADLRAINIQMTSGGTEFDLISPFGK 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    IG     N+L ++G        +   IK+        G   R+        F+
Sbjct: 290 HKVSLKMIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAG---RFETVDAGQDFS 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y+  P S+K A+  + Q +     R   ++G     G+  +S    +AE+   Y+
Sbjct: 347 VIVD-YSHTPDSLKNALETVKQFALK---RIFTIVGC---GGDRDRSKRPLMAEIACQYS 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVVV--KS 451
              ++ S        + +   +   +     +T+        +   +   GDV+++  K 
Sbjct: 400 TDPIFTSDNPRSEDPIQILRDMEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKG 459


>gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
 gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
          Length = 517

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 172/479 (35%), Gaps = 45/479 (9%)

Query: 7   FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             +L+  + G             V+G+S DSR I P   F A++G   DGH  I  A++ 
Sbjct: 13  LGELIDGLGGLVDRRGACASDRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEA 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  +V   +   +     +    V +   AL +L+         +  +I +TG+ GKTT
Sbjct: 73  GAVAIVC--EAYPAELRDGVCYLRVTESRKALAELSKNCYGNASDQLMLIGVTGTNGKTT 130

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI--------------GVPLTLARMPVDVDFGIFEL 167
           T  +++  L++       IG+    I                   L R  VD       +
Sbjct: 131 TARLISSMLNAAGIPAGYIGTGLCRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVM 190

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    +    H +R   AV T + P HL     +EE A+AK  +F  L   G   LN 
Sbjct: 191 EVSSHALVLDRVHGLRFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSRLTDDGFAVLNA 250

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           DD     + A      +      G S   D    F+        E S  EV    +S  +
Sbjct: 251 DDPQAGFMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSATM 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   NML    +   L  D   A+  L+      GR +R   A       +  
Sbjct: 311 QVPLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSADRSRCGVV-- 368

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ A+  L  ++P    +   V G     G   +    ++  + +      
Sbjct: 369 -DYAHTPDALQKALETLRAVTPS-GSKLSVVFGC---GGNRDRKKRPEMGRIAAEL-ADR 422

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+  +            ++  +   +H+  S+  + +   +   L  GD+++V  K 
Sbjct: 423 VILTSDNPRDENPELILDEVEAGMAGRVHLRISDRAEAIRRAV-EGLGTGDILLVAGKG 480


>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
 gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
          Length = 495

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/476 (20%), Positives = 178/476 (37%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A+Q GA
Sbjct: 12  LKDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGA 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            L+VV+     S     I      +   AL  ++    A       +I +TG+ GKT+T 
Sbjct: 72  RLIVVDEFFDTSKIKGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTT 131

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
            M+   L +  +    IG+  N IG     A+                    VD  + E+
Sbjct: 132 FMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMRNEGVDSVVMEV 191

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L    F  +     + V T +   HL     +E   SAK ++F G+ K     +N 
Sbjct: 192 SSHSLEL--FRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF-GMSKKR--VINA 246

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DDS+ + +             ++ K  NA    R  K    ++  ++    K  E++ + 
Sbjct: 247 DDSWGKRIIEM-----YPDCMTYAKDSNATVCARNIKLYVNKNQFDLWYNDKKEEILLNI 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L       +L  ++DT  K L       GR +      N+ F  +ID  Y 
Sbjct: 302 PGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVES--NEKFTVVID--YA 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  +   ++++  ++   +GR++ + G     G+  ++    + E+        V ++
Sbjct: 358 HTPDGL---LNLMRTVNEVADGRKVLLFGC---GGDRDRAKRPIMGEIAGRM-ADFVIVT 410

Query: 408 GFHVLA------LKDALP--RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
             +         + D L   +  +V Y    D      +   +  + D +V+  K 
Sbjct: 411 SDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 466


>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 500

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 178/476 (37%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A+Q GA
Sbjct: 17  LKDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            LVVV+     S     I      +   AL  ++    A       +I +TG+ GKT+T 
Sbjct: 77  RLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTT 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
            M+   L +  +    IG+  N IG     A+                    VD  + E+
Sbjct: 137 FMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEV 196

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L    F  +     + V T +   HL     +E   SAK ++F G+ K     +N 
Sbjct: 197 SSHSLEL--FRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF-GMSKKR--VVNA 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DDS+ + +             ++ K  +A+   +  K    ++  ++    K   ++ + 
Sbjct: 252 DDSWGKRIIEM-----YPDCITYAKDSDANVCAQNIKLFVNKNQFDLYYNNKKENILLNI 306

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L       +L  ++DT  K L       GR +      NQ F  +ID  Y 
Sbjct: 307 PGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVES--NQKFTVVID--YA 362

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  +   +  +++++   +GR++ + G     G+  ++    + E+        V ++
Sbjct: 363 HTPDGLLNLMKTVNEVA---DGRKVLLFGC---GGDRDRTKRPIMGEIAGKM-ADFVIVT 415

Query: 408 GFHVLA------LKDALP--RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
             +         + D L   +  +V Y    D      +   +  + D +V+  K 
Sbjct: 416 SDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 471


>gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
 gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
          Length = 484

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 169/451 (37%), Gaps = 47/451 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I++DSR +     F A+KG H DGHDFI  A+ KGA  ++    +        +PV  VD
Sbjct: 22  ITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-DTQVPVCVVD 80

Query: 90  DVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +   L +L       +  K  +I ITG+ GKT+T + +  +L  + +    IG+    +
Sbjct: 81  GLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGTNGQGL 140

Query: 148 GVPL--TLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              L  TL   P                 +F   E+    L + R     +    AV T 
Sbjct: 141 WGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGR--VDGLHFSTAVFTN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E    AK  +           +N DD + +  + +  A   + ++++ 
Sbjct: 199 LSRDHLDYHHSMEAYFEAKWRLM-RWPGLRNAVVNLDDEWVQKNRERIMA---ERVWTYA 254

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              +AD Q  +          +V+     +++    +G     N L  L ++      V+
Sbjct: 255 LETDADVQALEVNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVPVN 314

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           TA + +S  +P +GR +  R A    +   +   Y   P +++ A+    +   H  GR 
Sbjct: 315 TAARVISNCNPVKGRMETLRSA----YSPTVVVDYAHTPDALEKALQSCRE---HVNGRL 367

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSI 422
           + + G     G+       ++A V   Y    V ++  +         +  ++       
Sbjct: 368 VVIFGC---GGDRDGGKRPEMARVAEQY-ADVVVVTDDNPRTEPSARIIADIEQGFSTEA 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           +   +     DVV++  K 
Sbjct: 424 NYRVIPDRREAIVQTLNDSERSDVVLIAGKG 454


>gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
          Length = 521

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 171/484 (35%), Gaps = 54/484 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              LL  I    +    +  G V  ++ DSR + P   F A++G   DGH FI  AV++G
Sbjct: 15  LEKLLGGISALELRGNRELAGEVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERG 74

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           AG V+     + S     +    V D   AL + A         +  II +TG+ GKTTT
Sbjct: 75  AGSVICEE--IPSGIEDGVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIG-SYNNHIGVPLTLARMPVDVDFG---------------IFE 166
            +++T  L++   +   IG +        + L R   +                   + E
Sbjct: 133 SKLITSMLNARGISCGYIGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVME 192

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  +    H +R   AV T + P HL     +E  ASAK  +F+ L   G   LN
Sbjct: 193 VSSHAL--MLKRVHGIRFRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTPDGFAVLN 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQG 278
            DD     + A+   +  + IY    S   D        F           S + +    
Sbjct: 251 RDDPAAPFMAAR---VLPEKIYCCSLSARQDTSLACGNSFFAEITGASIASSRVALHFPE 307

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             + +     G     NML    +   L  D D   +ALS+    EGR +R       G 
Sbjct: 308 TVVSIEVRLPGSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERV-GESCSGG 366

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +D  Y   P ++   +S L  +      R I V G     G   +S   ++  + S 
Sbjct: 367 MAFVD--YAHTPDALFKVLSTLRDLKDEH-SRLIVVFGC---GGNRDRSKRPEMGRIASE 420

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +            ++  + R                  S +  GDV++V
Sbjct: 421 L-ADEVIITSDNPRDEDPEAILDEIEQGMNRDGRYRRIIDRAEAISVAVSMIGKGDVLLV 479

Query: 450 --KS 451
             K 
Sbjct: 480 AGKG 483


>gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Deinococcus deserti VCD115]
 gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Deinococcus
           deserti VCD115]
          Length = 433

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 179/457 (39%), Gaps = 56/457 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                   ++ DSR  +P  AF A+ G    G+ F+  A+  GA  V+ + D+  +   L
Sbjct: 16  PEARPARRLTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDVPRA---L 72

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P     +   AL   A   R R+   ++ ITGS GKTT K     AL +         
Sbjct: 73  RVPSQEESNARDALFAWARQERARNSL-VVGITGSAGKTTAKSYAAAALEAHYMPV---- 127

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            YN    +   L          + E+G+  +GE+  L  LVRP + V+T+I PAHL    
Sbjct: 128 -YNTMPAIACFLIEYGASDRPLVVEMGIDRIGEMAELVDLVRPDVGVVTSIGPAHLEQLG 186

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            IE IA  K  I +G                   +A  +      + S+G   N     +
Sbjct: 187 SIEGIAREKGVILQGRRA------------LVGAQAAPYYSQNPGVESYGFG-NVTHAGQ 233

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +   E +          ++V         A+  ++ + +       ++ A   L+   
Sbjct: 234 DLQVTPEGAGFSY----GGVDVALPLAAPVQAEAAVLGMVLAQQAGIPLEAAASRLAQVS 289

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR + +      G +T+ID++YNA+P +++AA+  L  +     GRRI+VLG M E+
Sbjct: 290 LPGGRYRVH-----PGRYTVIDDAYNASPLAVQAALDALGALP----GRRISVLGRMLEL 340

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G   +  H  +            +  G     L D            T+  L   + + +
Sbjct: 341 GPTERELHAQVGSYARER-ADLTYGVGPFAAELGDRA--------FATVPELLGALTAEV 391

Query: 442 VDGDVVVVKSSNSC------------GFYRLINLLLE 466
            DGDVV++K+S               G   ++N LL+
Sbjct: 392 RDGDVVLIKASRGISWTPEQRAQEGVGLDVVVNALLQ 428


>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 499

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/487 (19%), Positives = 170/487 (34%), Gaps = 66/487 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--- 220
           + E+    L             IAV T +   HL      +E    K+ +F  L      
Sbjct: 183 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLST 240

Query: 221 ---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSF 296

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 297 NGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI--IDENQD 354

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P +++  +S +S+ S   +G+ I V G     G+        +  +  
Sbjct: 355 FLVIVD--YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAG 406

Query: 398 LYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDV 446
            Y+   V+++  +         +  ++    ++ +++Y   +D         +     D+
Sbjct: 407 SYS-DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDI 465

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 466 VLIAGKG 472


>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
 gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
          Length = 485

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 181/478 (37%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I   +I    +  + G++IDSR IA    F A+KG   DGH FI  A+++G
Sbjct: 1   MKLSELLKNITPIAIHGNAEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQG 60

Query: 65  AGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V++       +     + V   ++  G +  L        K  ++ +TG+ GKTT  
Sbjct: 61  AVAVLLEDMPNTLNDNVTYVQVESTENTAGKVATLF-YGDPSHKLKLVGVTGTNGKTTIA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFEL 167
            +L             + +  N+I             P+ L ++  D      ++   E 
Sbjct: 120 TLLYNMFREFGYKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFMEC 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               + + R     +    A+ T +   HL      E   +AK   F+GL K      N 
Sbjct: 180 SSHAIHQHRI--GGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDGLSKHAFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    TI ++   + ADF+ +  +   E  ++E+  +    EV    
Sbjct: 238 DDKNGMIMVQNTKA----TIKTYSTKRMADFRAKILECHFEGMYLEIDGK----EVGVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    D  + ALS      GR +  +    +GF  ++D  Y 
Sbjct: 290 IGKFNVSNLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPIQSP--EGFTAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  ++ +  +  +  G  I V G      +  +     +A+     +   V L+
Sbjct: 346 HTPDALENVLTAIHDVLDNKGGHIITVCGAGGHRDKGKRPL---MAQEAVKQS-DTVILT 401

Query: 408 GF------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          ++A  DA  R   ++  +  + +          GDV++V  K 
Sbjct: 402 SDNPRDEDPQAIINDMMAGLDATQRKKVLNIVDRKEAIRTAAM-MAKRGDVILVAGKG 458


>gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
 gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
          Length = 491

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 164/458 (35%), Gaps = 40/458 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                P   +  + +DSR + P   FF IKG  +DGH ++  A++ GA  VV + D+  +
Sbjct: 6   LFDNAPDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDIKRN 65

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
             +  +    V DV  ALN            K  +  +TG+ GK++   M+   L+ +  
Sbjct: 66  NAN--VVYIKVRDVTAALNQVAACFYGYPSKKMVVYGVTGTNGKSSIACMIRNLLNPVY- 122

Query: 136 TYACIGSY--------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               IG+                  I     +             L +S +G  +  T  
Sbjct: 123 ACGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMAQAGMKACALEISSIGLEQHRTDS 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   IA+ T +   HL     +E    AK  +F+ L+  GT   N DD     + A   A
Sbjct: 183 VDVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKPDGTAITNKDDPHGMAIVADCPA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + ++G  + AD++ +  +  ++++   +   G    V  + +      N+L  + 
Sbjct: 243 ----RVVTYGVLEKADYEAKDIQLNADKTIFTLVHDGSEYPVQTNLVAMFNLYNLLAVIA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +      ++  ++ L+     EGR +R      +G    I   +   P  ++      S
Sbjct: 299 ALHEGGLPIEQILEQLNTIPQIEGRMERIE----EGQPFNIIVDFAHTPDGLEQIFKFAS 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
            I+P  + R I+V G     G+          ++   Y    + L+         + + +
Sbjct: 355 AITPKEK-RIISVFGS---AGKRDTKKRPVFGQLADKY-CDLIILTEDDPRDEDPIQIAE 409

Query: 417 ALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVVKS 451
            +   I        E+              GD +++  
Sbjct: 410 EIAAGIQKTNRIIIESRYDAIRQAVEVANVGDTILILG 447


>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 498

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 155/419 (36%), Gaps = 36/419 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F ++LQ+++  S G   +  + GI+ DSR   P   F A++G   DGHD+IL AV  G
Sbjct: 1   MLFGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  V++  DM+       I    V D   AL  L+         +  +I +TG+ GKTTT
Sbjct: 61  AVAVILQKDMILPD---YIAWARVPDSRKALALLSARFYNYPSRRLKMIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELG 168
             ++     +       IG+  N IG  +              +L    +     +  + 
Sbjct: 118 AHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVAME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG------T 222
           +S               IAV T +   HL     +E+  +AK+ +F GL+  G       
Sbjct: 178 VSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGAKY 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD       A+   L    + ++G  K AD         ++ +   V  +   + 
Sbjct: 238 AIINADDEA----AARLTRLSGGQVITYGMVKKADIIAENITVRADGASFTVASRQGKVT 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  +  G     N L    +  +          AL       G   R+        F +I
Sbjct: 294 INLNLTGKFNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPG---RFELVDEGQDFAVI 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            + Y   P  ++  ++   + +    G+ I V G   +     +    +++  LS + I
Sbjct: 351 VD-YAHTPDGLRNILNTAREFTA---GKLINVFGCGGDRDRTKRPLMGEISGRLSDFTI 405


>gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum H04402 065]
          Length = 483

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 174/475 (36%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   +    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSFMKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              + L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    ++ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  KN D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--ITYGLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL       GR +      N G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++   + +   +GR I+V G   +     +     +   LS        +
Sbjct: 349 AHTPDGLENILNTAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSNLS----DIAII 401

Query: 407 SGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD L      +Y   E              + DV+VV  K 
Sbjct: 402 TSDNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
 gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
          Length = 484

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 174/477 (36%), Gaps = 51/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL++I+  +I       + G++IDSR I+   AF A+KG   DGH FI  A++ G
Sbjct: 1   MNLQELLKSIKSLAIIGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +    +  +    V     A+ KL  A       K  ++ +TG+ GKTT 
Sbjct: 61  AKAILC--EDMPEDRTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167
             +L      +      + +  N+               I +   LA+M       +F  
Sbjct: 119 ATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKMVDAGCEYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    R +  L     A+ T +   HL      E   +AK   F+ L K+     N 
Sbjct: 179 CSSHAIAQRRIGGLT-FTGALFTNLTRDHLDYHGTFENYRNAKKMFFDDLPKSAFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A    TI ++   + ADF+ R  +      ++ V      ++     
Sbjct: 238 DDKNGMFMVQNTKA----TIKTYSMERMADFRARIIEMHFAGMYLNVDGNDVGVQ----F 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  +  LS  H   GR +  + +  +G   ++D  Y 
Sbjct: 290 IGKFNVSNLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQSS--EGVTAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ + ++     G+ I V G     G   +     +A+     +   V ++
Sbjct: 346 HTPDALANVLNAIREVDK--TGQIITVCGA---GGNRDKGKRPLMAQEAVKQS-DRVIIT 399

Query: 408 GFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         + D L      +   V                   GDVV+V  K 
Sbjct: 400 SDNPRFEEPQDIIDDMLAGLNTQQMKKVVSIADRREAIKTACMLAKKGDVVLVAGKG 456


>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 484

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 179/477 (37%), Gaps = 53/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I+   +       + GI  DSR+      F AIKG   DG D+I  A+++G
Sbjct: 1   MRLADVLKDIEYTIVKGNVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+V+ ++        I +  V +   +L K+A         +  +I +TG+ GKT+ 
Sbjct: 61  AVAVLVDGEISI---DKDITLIKVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSV 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVD--VDFGIFE 166
             M+   L S       IG+  N IG  +                 R+ VD  V + + E
Sbjct: 118 TYMIKSILESQNNKVGLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         IAV T +   HL     +++ A+AKA++F   +      +N
Sbjct: 178 VSSHSLALNR--VDECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLFRMAKT--ACVIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  L+   S+A     + ++G    A    +  K   + +   VQ++    ++   
Sbjct: 234 IDDDYSSLIIENSNA----KVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALK 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +  IL   + +   A       + +G+     ++  +  +ID  Y
Sbjct: 290 IPGLFSVYNSLAAISVAFILGIPLQSVKIA---LKDVKIKGRFEILDIDAPYNVVID--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +    +      GR+I + G     G+  +     + EV   Y    V +
Sbjct: 345 AHTPDGLENLMKAFGEYDT---GRKILLFGC---GGDRDKGKRPKMGEVAGKY-ADFVII 397

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         ++  +          E       +  S   D D+V++  K 
Sbjct: 398 TSDNPRSEDPMQIISEIEMGIKNTKCPYKIIENRKEAIKYALSIAKDNDIVILAGKG 454


>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
           str. Sterne]
 gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
          Length = 401

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 139/399 (34%), Gaps = 45/399 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I     F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--- 220
           + E+    L             IAV T +   HL      +E    K+ +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 233

Query: 221 ---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD   E  K  + A     + ++G    AD Q +      +     V   
Sbjct: 234 IDKKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSF 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ 
Sbjct: 290 NGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEI--IDENQD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           F  ++D  Y   P +++  +S + + +   +G+ I V G
Sbjct: 348 FLVIVD--YAHTPDALENVLSTIREFA---KGKIITVFG 381


>gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 483

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 175/478 (36%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ I    I       + GI  DSR      AF A+KG   DGH +I +A+  G
Sbjct: 1   MKLKDLLKGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQYINNALDLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A +V+    +  S     I    V D   A  K+A        +K  ++ +TG+ GKTTT
Sbjct: 61  AKVVIHQEKVDTSREG--ITYIKVKDSADAAGKIATLWYGDPSAKLKLVGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             PL+L  M         ++   E
Sbjct: 119 ATLLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAKMVDAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T I   HL     + E   AK   F+ L +T     N
Sbjct: 179 VSSHAIHQKRI--SGLKFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDNLPETAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A      Y++     ADF+ +  ++  + + +E      + E+   
Sbjct: 237 ADDKNGAVMLQNTKAKK----YTYSVKTLADFKAKIIEKHFDGTAVEFN----NKELQVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L   G   +L  D D A+  LS   P  GR +  R   N   +T I + Y
Sbjct: 289 FVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPEN---YTAIVD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   +  + ++   G GR I V+G     G   ++    +A      +   V L
Sbjct: 345 AHTPDALTNVLEAIHEV-LEGNGRVITVVGC---GGNRDKTKRPIMAREAVRLS-DQVIL 399

Query: 407 SGFHVLA---------LKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            + D L   +          +       +   +GDV+++  K 
Sbjct: 400 TSDNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAGKG 457


>gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 508

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 146/358 (40%), Gaps = 22/358 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVD 161
           R R     I ITGS GKT+TK  +T  LS          SYN  +GV   +   +     
Sbjct: 152 RNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQ 211

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G    G+I+ L  L  P I VIT+I P HL  F  IE +A  K E+ EGL + G
Sbjct: 212 IFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLPEDG 271

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWME-VQL 276
              LN D+ +      K     ++ ++ +G     +              +    + V  
Sbjct: 272 IAVLNGDNYYCRTFGEK---FAVRKLF-YGTESPIERKYFLWAENIINTRQGLKFDAVTE 327

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G  ++     +G H   N+L  + +   L  + +   + LS   P      R +     
Sbjct: 328 DGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVP---HRLQLISTP 384

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ID+++N+NP   K A++ L ++      RRI V   M E+GE     + +L + +
Sbjct: 385 HGVTVIDDAFNSNPEGAKEALACLKEMDAK---RRIIVTPGMVELGEKEYEENKNLGKNI 441

Query: 397 SLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +     +  L G          LK+A      V     +D     +Q+ L  GDVV+ 
Sbjct: 442 AEV-CDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGDVVLF 498


>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
 gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
          Length = 483

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 176/476 (36%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I+  +I    +  + GI+IDSR I P + F A+KG   DGH FI  A++ G
Sbjct: 1   MELSKLLKNIKPTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELG 60

Query: 65  AGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+       ++ G   + V   +D +G +  L       SK  ++ +TG+ GKTT  
Sbjct: 61  AKAVLCEDMPENTVEGVTYVQVASTEDAVGPVATLF-HGDPSSKLKLVGVTGTNGKTTVA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELG 168
            +L      +      + +  N+I                    L RM       +F   
Sbjct: 120 TLLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMEC 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH    + +   ++    + T +   HL      E   +AK   F+GL K      N D
Sbjct: 180 SSHAIAQKRI-GGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A    TI ++     ADF+ R  +   E  ++EV       EV    I
Sbjct: 239 DKNGMVMVQNCKA----TIKTYSTRTMADFRARIIECHFEGMYLEVD----GHEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  +S      GR +  R A  +G   +ID  Y  
Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSA--EGVTAIID--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +S + ++  +G+GR I V G     G         L  V ++     V ++ 
Sbjct: 347 TPDALENVLSAIHEV-LNGKGRVITVCG----AGGNRDKGKRPLMAVEAVKQSDKVIITS 401

Query: 409 FHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L      +   V                   GDVV++  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKG 457


>gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
 gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
          Length = 457

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 101/401 (25%), Positives = 164/401 (40%), Gaps = 15/401 (3%)

Query: 62  QKGAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KG  LV+ +           +  V  V  V  A        R      ++A+TG+ GKT
Sbjct: 54  RKGPSLVISDKPATELKNALDNTTVLHVKSVAQAYWTFIEYYRGLFHIPVVALTGTCGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML    S   +  A + S N        L  +       IFELG+ + G I+    
Sbjct: 114 TTKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGLGNTGNIKHQCM 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +IT I   HL     +E    AKAEI EG+   GT+ +N DD+  E +   S+
Sbjct: 174 IYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGTLIINADDANIEKI---SY 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  FG   +AD++    +         +++      V   G G H   N L  +
Sbjct: 231 QKFKGKIIKFGLQDSADYKASAIQFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              S +   +  AI  L  F       +        G  T+ID+++  NP S++AA+ VL
Sbjct: 291 AACSEMGLSIRQAIAGLRSFKQMA---RHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +      + I VLGD+  +G   + +H ++   ++   I  +   G    A+ D   +
Sbjct: 348 DTVGKEK--KVILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITIGKRAEAIADQAKK 405

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSC 455
                 VH  + + G+   ++  L    +V++K    S S 
Sbjct: 406 DGTKAEVHTFKDVIGVLEILKPKLDADTIVLIKGPMSSKSM 446


>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 495

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 175/476 (36%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I      +      +  I+ +S++     AF  IKG   DGH++I  A++ GA
Sbjct: 12  LKDLIENIDAMETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGA 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            LVVV+     S     +      +   AL  ++            +I +TG+ GKT+T 
Sbjct: 72  RLVVVDEFFDTSKIEGKVDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTT 131

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
            M+   L +  +    IG+  N IG     A+                    VD  + E+
Sbjct: 132 FMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEV 191

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L    F  +     + V T +   HL     +E   +AK ++F G+ K     +N 
Sbjct: 192 SSHSLEL--FRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-GMSKKR--VVNA 246

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DDS+ + +             ++ K  +A    +  K    ++  E+   GK  E+  + 
Sbjct: 247 DDSWGKRIIEM-----YPDCVTYAKDSDAQVCAKNIKLFVNKNQFEMWYNGKKEEITLNI 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L        L  ++DT  K L       GR +      N+ F  +ID  Y 
Sbjct: 302 PGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVES--NERFTIVID--YA 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  +   ++++  +    EGR++ + G     G+  ++    + E+        V ++
Sbjct: 358 HTPDGL---LNLMKTVDDVAEGRKVLLFGC---GGDRDRTKRPIMGEIAGRM-ADFVIVT 410

Query: 408 GFHVLA------LKDALP--RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
             +         + D L   R  +V Y    D      +   +  + D +V+  K 
Sbjct: 411 SDNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKG 466


>gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 535

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 146/358 (40%), Gaps = 22/358 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVD 161
           R R     I ITGS GKT+TK  +T  LS          SYN  +GV   +   +     
Sbjct: 179 RNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQ 238

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G    G+I+ L  L  P I VIT+I P HL  F  IE +A  K E+ EGL + G
Sbjct: 239 IFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLPEDG 298

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWME-VQL 276
              LN D+ +      K     ++ ++ +G     +              +    + V  
Sbjct: 299 IAVLNGDNYYCRTFGEK---FAVRKLF-YGTESPIERKYFLWAENIINTRQGLKFDAVTE 354

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G  ++     +G H   N+L  + +   L  + +   + LS   P      R +     
Sbjct: 355 DGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVP---HRLQLISTP 411

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ID+++N+NP   K A++ L ++      RRI V   M E+GE     + +L + +
Sbjct: 412 HGVTVIDDAFNSNPEGAKEALACLKEMDAK---RRIIVTPGMVELGEKEYEENKNLGKNI 468

Query: 397 SLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +     +  L G          LK+A      V     +D     +Q+ L  GDVV+ 
Sbjct: 469 AEV-CDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQNLLQPGDVVLF 525


>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
 gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
          Length = 484

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 179/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + ++    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+G   E   
Sbjct: 233 LDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLEGIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|296166025|ref|ZP_06848476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898624|gb|EFG78179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 444

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 155/378 (41%), Gaps = 22/378 (5%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     D+ + E
Sbjct: 38  GLTIIGITGSSGKTSTKDLVAAVLEPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLVLE 97

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +G + LN
Sbjct: 98  MSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIARTKSELPQAVPSSGVVVLN 157

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCS-EQSWMEVQLQGK----S 280
            DD     +   + A  ++   S       +D            +    +          
Sbjct: 158 VDDPMVAAMARVTDAWVVRVSRSSHTDSGPSDVWADGVSLDELARPRFTLHAMNAQGTVE 217

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V     G H   N L    +     A V+    AL    P      R          T
Sbjct: 218 VGVQLGVYGDHQVTNALCAGAVALQCGATVEQVATALEQAGPVS--RHRMHVTTRADGVT 275

Query: 341 LIDESYNANPASMKAAISVLSQIS----PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           +ID++YNANP SM+A +  L+ I+         R  AVLG+M E+G+ + + H  +  + 
Sbjct: 276 VIDDAYNANPDSMRAGLQALAWIAHGAGAGERRRSWAVLGEMAELGDDAVAEHDRIGRLA 335

Query: 397 SLYNISHVWLSGFH--VLALKD--------ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              ++S + + G    + A+                        D     +++ L  GDV
Sbjct: 336 VRLDVSRLVVVGTGRSMSAMHHGAVMEGSWGASGERGAVSVADADAALALLRAELRPGDV 395

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK+SN+ G   L + L
Sbjct: 396 VLVKASNAAGLGTLADAL 413


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 107/467 (22%), Positives = 196/467 (41%), Gaps = 25/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   + +      IG      +   + DSR I       F AIK    +G  +I 
Sbjct: 1   MN--YTARQIAEITGAKLIG-AGDKIIKHFAFDSRIIYSPKNTGFVAIKTKKNNGEKYIA 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+KG  L+V       ++ +  +    VDD +  L KLA           I ITGS G
Sbjct: 58  SAVEKGIELIVSEHK---TLDNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   LS   +      S+N+ IG+PL+L  +  +   GIFE+G+S   E+  L
Sbjct: 115 KTIVKEWLYQCLSEDIRCVKSPKSFNSQIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTL 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I V+T I  AH+SNF   + +   K  +F   + + +I  N D+         
Sbjct: 175 ETIFSPKIGVLTHIGSAHISNFKSEKHLVDEKISLF---KDSESIIFNGDNILVSN--KI 229

Query: 239 SHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     K + S+G +K+ +  +   WK    Q  + VQ   KS              N+L
Sbjct: 230 NTLYSSKNLISYGFNKDNNIHISSNWK--DRQQPITVQCFDKSFSFPAQQRDEATLSNVL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + ++ +L    +  I+ ++     E    R           +I++S+N +  S+K A 
Sbjct: 288 AIIAVMHLLEFSTEKMIEKINNLKAVE---MRLESVNGIKNNLIINDSFNLDLDSLKIAF 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +     + + ++  ++ D  E    + + + ++A +++  N + V+L G  +   +  
Sbjct: 345 EFIKS---YQKPKKSLIITDFTE-KSDADNLYQEVASLINEQNFNKVFLIGEEISQYQHL 400

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L  +       T + LF   +   ++ +++++K +      ++   L
Sbjct: 401 L--NTESFSFNTTNDLFSNQEFKDLENELILLKGARKFEIEQVKTYL 445


>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 484

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 179/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V+    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+G   E   
Sbjct: 233 LDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLEGIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
 gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
          Length = 472

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 112/485 (23%), Positives = 194/485 (40%), Gaps = 47/485 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P ++   L     G      P   +   +IDSR +   + F AIK    DGH      +
Sbjct: 1   MPSFSPAQLASWTGGRWTA-QPVSSLLAFAIDSRQLRRGDVFVAIKSEQRDGH----AFL 55

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
                       +     +L++P   V D L A   +A   R   +  ++ I+GS GKT+
Sbjct: 56  GAAEAAGASAALVSTPDPALALPQLVVADPLRAFQAIAREHRRLFRGPVVGISGSAGKTS 115

Query: 122 TKEMLTIAL--------SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHL 172
           TK +L + L        +   +  A  G+ NNH+GVPLTL  + P    F + E G+S  
Sbjct: 116 TKNLLALLLETAAASSDAHAGQVLATEGNLNNHLGVPLTLTLLDPAVHRFAVVEAGISAP 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+  L  +++P +A+IT +A AH     G+  +A  KA +   +  TG           
Sbjct: 176 GEMAPLAEMIQPDVALITLVAAAHTEELGGLAGVAKEKAVLPAAVPPTGIAIFP---KHC 232

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------------ 280
               A       + +      + AD  +R  +   ++ +  V  + +             
Sbjct: 233 TEFAAFRELDVQQMVV-----ERADV-IRPAQPPRDKVFFTVSHRDEHTVVALAYGPPPP 286

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      +   MAQN  + +     L    ++  + L+ + P + RG+  R    +    
Sbjct: 287 LTFTLRRVSDGMAQNAALAICAALWLGVPAESIQQRLAQWQPAKLRGELRR----ENGRW 342

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L  + YNANPASM  A+     ++P  E R   VLG M E+G  +  +H +L   L L  
Sbjct: 343 LYLDCYNANPASMTDALEAFYGMAPTAEPRLF-VLGGMEELGREAAGYHHELGRALRLRA 401

Query: 401 ISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                + G H  A++     +      V  +E+++ + + + +       V VK S    
Sbjct: 402 GDQAVVIGEHAPAVRAGALAAGTAPDQVRVAESLEPIAVQVAAWRGA---VFVKGSRRYA 458

Query: 457 FYRLI 461
             +++
Sbjct: 459 LEKVL 463


>gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 457

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 111/473 (23%), Positives = 189/473 (39%), Gaps = 31/473 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W    L     GH +G      +     D+R +   + F A+     DGHDF+  A+  G
Sbjct: 4   WDPSQLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGARDGHDFVEQALAAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG  +V+  +      L IP   V+D L A+  +  A R      ++ +TGS GKT+TKE
Sbjct: 64  AGSALVSRPL-----DLPIPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVR 183
           ML + L      +A  G++NN IGVP+TL  +  +  +F + E G++  GE+  L  ++ 
Sbjct: 119 MLRLVLGES-VAHATAGNWNNRIGVPMTLFGLDSERQEFAVIEAGINQPGEMNHLGEMIA 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
             + V+T I  AHL     +E IA+ K+++      +  + L  +  ++    + ++ A+
Sbjct: 178 ADVVVVTAIEAAHLELLQTVETIANEKSQLMAHARPSALLILPAELLNYAAFNRYRARAV 237

Query: 243 GIKTIYS---FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +    S    G      ++    +      +      G   E         + +N  + 
Sbjct: 238 AVVEAGSPVPEGVLSTVSYRFEGPRIVLSGEYFAAV--GGRCEFQLASQSRGIRRNAALA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +   ++L      +   +  + P   RG+    A  Q       + YNANPASM  A+  
Sbjct: 296 MVTAAVLGQPTKVSRVGIENWQPSGDRGRLIESAGRQ----FYVDCYNANPASMADALDA 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413
            +   P    R   VLG M E+G  +   H +  E         V+L G          A
Sbjct: 352 FAHSVPDEVPR-CYVLGAMNELGADAPRLHRESIEGHDFRPQDRVYLVGPQALLAGYAQA 410

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-NLLL 465
           L+ A  +       E  +      + +L       +K S S    +L+   L 
Sbjct: 411 LEKAGSQLSFGEKVENFESEIADFKGALF------LKGSRSYRLEQLLPEALR 457


>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 507

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 183/475 (38%), Gaps = 41/475 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL++ +    I       V G++ DSR + P   FFA++G   DGHDFI  A+ +
Sbjct: 1   MTILRDLIEGLDKPVISGGLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAE 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  +V  T         S+    V +   AL ++A A          +  +TG+ GKTT
Sbjct: 61  GAVAIVAETA---PPEDCSVTWLHVKNARVALAEMAAAYKGHPARSMAVGGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFEL 167
           T  +L   L+   +    +G+    +G  L               L     D       +
Sbjct: 118 TAFLLHHLLNHAHRRCGLLGTVVYDVGGDLKPATHTTPESLELQGLLSEMRDRGCVAVAM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFL 225
            +S     +  TH V    AV T ++  HL     +EE   AK+++F      ++G + +
Sbjct: 178 EVSSHAIDQHRTHGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +   L           + ++G    AD++    +     +  E++ +G+S+ V  
Sbjct: 238 NVDDIWGRRLVDAHKEHPG--LVTYGLGVAADYRAVNPRYDLTGTSFELEHKGRSLLVRI 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG     N L  L     +  ++   +KA+       GR +R     N  F   +D  
Sbjct: 296 PQIGQFNVYNSLAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERV-TPDNHSFHVFVD-- 352

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEVLSL 398
           Y   P  +  A+S    + P    R I V G   +           +   H D++ + S 
Sbjct: 353 YAHTPDGLVNALSTARALRPE---RIITVFGCGGDRDRLKRPLMARAVEEHSDISILTSD 409

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +    +   +   +    RS H   ++  + +   I+ +  +GD+VV+  K 
Sbjct: 410 NPRTEDPQA--IMDDARKGFTRSAHALIADRKEAIHTAIKGA-REGDIVVIAGKG 461


>gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 500

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 98/476 (20%), Positives = 175/476 (36%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I      +      +  I+ +S++     AF  IKG   DGH++I  A++ GA
Sbjct: 17  LKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            LVVV+     S     I      +   AL  ++            +I +TG+ GKT+T 
Sbjct: 77  RLVVVDEFFDTSKIDGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTT 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
            M+   L +  +    IG+  N IG     A+                    VD  + E+
Sbjct: 137 FMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEV 196

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R   +     + V T +   HL     +E   +AK ++FE  +K     +N 
Sbjct: 197 SSHSLELYR--VYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEMSKKR---VVNA 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DDS+ + +             ++ K  +A    +  K    ++  E+   GK  E+  + 
Sbjct: 252 DDSWGKRIIEM-----YPDCVTYAKDSDAQVCTKNVKLFVNKNQFELWYNGKKEEITLNI 306

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L        L  ++DT  K L       GR +      N+ F  +ID  Y 
Sbjct: 307 PGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVES--NERFTIVID--YA 362

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  +   ++++  +    EGR++ + G     G+  ++    + E+        V ++
Sbjct: 363 HTPDGL---LNLMKTVDDVAEGRKVLLFGC---GGDRDRTKRPIMGEIAGRM-ADFVIVT 415

Query: 408 GFHVLA------LKDALP--RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
             +         + D L   R  +V Y    D      +   +  + D +V+  K 
Sbjct: 416 SDNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKG 471


>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 486

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 172/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL++ I    +        +  I+ +S++      F  IKG   DGH++I  A+Q 
Sbjct: 1   MKLLDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA LVVV+     S     I      +   AL  ++            +I +TG+ GKT+
Sbjct: 61  GACLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
           T  M+   L +  +    IG+  N IG     A+                    VD  + 
Sbjct: 121 TTFMIKSILEAHGQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQMKSEGVDSVVM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L    F  +     + V T +   HL     +E   +AK ++F G+ K     +
Sbjct: 181 EVSSHSLEL--FRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-GMSKKR--VV 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + +             ++ K  +A    R  K    ++  E+   G+  E+  
Sbjct: 236 NADDMWGKRIIEMYPDS-----VTYAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITL 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N L        L   +D   K L       GR +      NQ F  +ID  
Sbjct: 291 NIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVES--NQKFTVVID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  +   ++++  ++   +GR++ + G     G+  ++    + E+        V 
Sbjct: 347 YAHTPDGL---LNLMKTVNEVTDGRKVLLFGC---GGDRDRTKRPIMGEIAGRM-ADFVI 399

Query: 406 LSGFHVLA------LKDALP--RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           ++  +         + D L   +  +V Y    D      +   +  + D +V+  K 
Sbjct: 400 VTSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 457


>gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 497

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 172/471 (36%), Gaps = 54/471 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
              G +    V+ ++ DSR + P   FF I+G   DGH F   A + GA + V +  +  
Sbjct: 14  RVEGSLENIVVDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGANVFVASKPIKE 73

Query: 77  SIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +G    PV  V DV  +  L              +I +TG+ GKTT   M+   L  + 
Sbjct: 74  QVGDS--PVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVTHMVDYLLEELG 131

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDV----------------DFGIFELGMSHLGEIRFL 178
           K  A IG+    IG      R                     D  I E+    L   R  
Sbjct: 132 KPTALIGTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEVSSHALQLGR-- 189

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFF 232
              +  ++AV T +   HL     +E  A AK+ +F  L      EK     LN D  +F
Sbjct: 190 VWGIDYNVAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVAILNRDQEYF 249

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                 + A     I S+G S+ AD +  + +     +   V + G+ + V+   IG   
Sbjct: 250 GQFAYSTSA----EIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPMIGLFN 305

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L   G+  +    +  AI+ ++ F    GR +  +    Q F  +ID  +   P  
Sbjct: 306 VYNVLAAFGVAMVNGIPLRKAIEKIAKFPGVGGRMQLIQ--KGQPFQVIID--FAHTPDG 361

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++  +S L ++  +   R I ++G     G    S   +L E+    +  +V L+  +  
Sbjct: 362 LENVLSTLEEVKIN---RVITIMGHSG--GNRDSSMRPELGEIAFEKS-DYVILTADNPR 415

Query: 413 ----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +      +      +              +GD+++   K 
Sbjct: 416 QESLEKIYSEIVSGRKNENTPYECVDDRKQAIERALELAQEGDILLFAGKG 466


>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 499

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 168/485 (34%), Gaps = 62/485 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L   +            + G+ +DSR I     F     I G   D H F+  AV+ 
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKN 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GKTT
Sbjct: 70  GAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
           T  +L   LS        +G+    +             P TL R        + D+ + 
Sbjct: 125 TSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----- 220
           E+    L             IAV T +   HL      +E    K+ +F  L        
Sbjct: 185 EVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTID 242

Query: 221 -GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD   E  K  + A     + ++G    AD Q +      +     V     
Sbjct: 243 KKIAVLNADDPSVEYFKKITSA----EVITYGIHNGADVQAKNINLSPKGIRFLVSSFNG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      NQ F 
Sbjct: 299 EIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI--IDENQDFL 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y     +++  +S +S+ S   +G+ I V G     G+        +  +   Y
Sbjct: 357 VIVD--YAHTLDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAGSY 408

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVV 448
           +   V+++  +         +  ++    ++ +++Y   +D         +     D+V+
Sbjct: 409 S-DFVFITSDNPCSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 449 V--KS 451
           +  K 
Sbjct: 468 IAGKG 472


>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
 gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
          Length = 483

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 174/478 (36%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ I+  ++       + G++IDSR IA    F A+KG   DGH FI  A+++G
Sbjct: 1   MKLNELLKNIKPVAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFIPKAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  ++        +    +    V+    A  K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKAILCEDMPEMKVEG--VTYVKVESTEDAAGKVATLFYGDPSKKLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L      +      + +  N+I             P+ L  +         ++   E
Sbjct: 119 ATLLYNMFRKMGYKCGLLSTVCNYIEDEAIPADHTTPDPIELNELLGRMVNTGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     ++    + T +   HL      E   +AK   F+ L K      N
Sbjct: 179 CSSHAIAQKRI--SGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDELPKGAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++     ADF+ R  +   E  ++++       EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSTRSAADFKARILECHFEGMYLDID----GHEVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  +  +S  H   GR +       +G+  ++D  Y
Sbjct: 289 FIGKFNVSNLLTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIHSP--EGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  + ++  +G+G+ I V G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALENVLKAIHEV-LNGKGKLITVCGA---GGNRDKGKRPLMAQEAVKQS-DKVII 399

Query: 407 SGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L      +   V                   GDV++V  K 
Sbjct: 400 TSDNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAGKG 457


>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 493

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 171/455 (37%), Gaps = 43/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIP 84
            +  +  DSR + P + F A +G + DG DFI  A++KGA  V+ +  D  A       P
Sbjct: 22  PIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAVLWDEADGFAWKAEWQAP 81

Query: 85  VFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V ++          V        T++ ITG+ GKT+    L  A S + +  A IG+
Sbjct: 82  NLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTNGKTSISHWLAQAFSLLGQKAALIGT 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAV 188
             N     LT           + +              + +S  G  +F  + V    AV
Sbjct: 142 VGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQFRVNGVEFATAV 201

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T +   HL     +E    +K ++F  EGL+      +N DD+F   L A       + 
Sbjct: 202 FTNLTRDHLDYHGSMEAYGESKKKLFFWEGLKH---AVINADDAFGRQLAAGIDPKQTR- 257

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G  +  D +        E   + V     +++V    +G   A N+L  L  + + 
Sbjct: 258 VVTYGL-EQGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAANLLACLATLCVN 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A   ++   P  GR +    ++      L+   Y   P +++ A++ LS+I P 
Sbjct: 317 GVSLQDAAAVMARIQPARGRMQ----SVGGAHEPLVVIDYAHTPDALEKALATLSEIRPA 372

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420
             GR   V G   +     +     +AE     +     L+  +  +      ++D L  
Sbjct: 373 -GGRLFCVFGCGGDRDPGKRPMMGAIAE----KHADVAVLTSDNPRSEDPQAIIRDVLAG 427

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   H     +    +  +    GDVV+V  K 
Sbjct: 428 MDAARAHVEADREAAIHWAVAQARVGDVVLVAGKG 462


>gi|317129523|ref|YP_004095805.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474471|gb|ADU31074.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 368

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 17/366 (4%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   + +TGS GK++T   +    ++  K      G+ N        +++   +    +
Sbjct: 6   PRVPAVGVTGSAGKSSTTSFINAIFNTRWKNVLTTKGNMNLPKHTKQAVSQFNRNHKAIV 65

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E+G   LG      + ++P+I VIT +  AH       I+E A AK+ +   +   G +
Sbjct: 66  LEMG---LGRASNHFNYIQPNIGVITNVGTAHYGKLGNSIKETAKAKSAMIRNIHPRGIL 122

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+  +LL  K+    +  +   G +  +++Q    K  S      V L+GK +  
Sbjct: 123 LLNNDDTNSKLLDYKNFKGDLIRV---GITSKSEYQATNIKYTSYGMIFGVTLRGKKVYF 179

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + I   L   ++     L        R    + +  +G   LID
Sbjct: 180 FIPAFGMHNVINALFAIAIADRLNFSINEMKLGLRSCKSPSRRVNVIKLSKPKGAL-LID 238

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++NANP S+KAA+ VL+++    + ++IAVLG M E+G+ S+  H ++   L+   I H
Sbjct: 239 DTFNANPQSVKAAVDVLAEL--GNKKKKIAVLGSMLELGDYSKKGHQEVGAYLAKKGIKH 296

Query: 404 VWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V+L G +       A+++ +P   ++ ++   D L   I   L +G VV++K S+     
Sbjct: 297 VFLYGKNASYVKTAAIENGIPEK-NILHTTNRDKLHYGILRVLNEGCVVLIKGSHKMKMS 355

Query: 459 RLINLL 464
           R    +
Sbjct: 356 RTAEYI 361


>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 486

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 172/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL++ I    +        +  I+ +S++      F  IKG   DGH++I  A+Q 
Sbjct: 1   MKLKDLIENIDVLETNVGDFGKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA LVVV+     S     I      +   AL  ++            +I +TG+ GKT+
Sbjct: 61  GACLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
           T  M+   L +  +    IG+  N IG     A+                    VD  + 
Sbjct: 121 TTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFWQMKNEGVDSVVM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L    F  +     + V T +   HL     +E   +AK ++F G+ K     +
Sbjct: 181 EVSSHSLEL--FRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-GMSKKR--VV 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + +             ++ K  +A    R  K    ++  E+   G+  E+  
Sbjct: 236 NADDMWGKRIIEMYPDS-----VTYAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITL 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N L        L   +D   K L       GR +      NQ F  +ID  
Sbjct: 291 NIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVES--NQKFTVVID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  +   ++++  ++   +GR++ + G     G+  ++    + E+        V 
Sbjct: 347 YAHTPDGL---LNLMKTVNEVTDGRKVLLFGC---GGDRDRTKRPIMGEIAGRM-ADFVI 399

Query: 406 LSGFHVLA------LKDALP--RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           ++  +         + D L   +  +V Y    D      +   +  + D +V+  K 
Sbjct: 400 VTSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 457


>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 418

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 155/421 (36%), Gaps = 42/421 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L+Q +  + +       ++ I +DSR +     FF IKG   DGH F   AV KG
Sbjct: 1   MKLQQLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFAQEAVNKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----------------- 107
           A  ++    +      +++PV  V D + A+  LA     +                   
Sbjct: 61  AVAIISEKPL-----DVAVPVIVVPDTMRAMAILADVFFQQPTHKLHLIGVTGTNGKTTT 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFE 166
             II       +  T  + TI +    KTY    +  + + +  +  +M  + VD  + E
Sbjct: 116 THIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQMVENKVDTVVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220
           +    L   R   +     +AV T +   HL     +EE   AK+ +F        L K 
Sbjct: 176 VSSHALHMGR--VYGCDFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSLGNSYNLAKP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   ++ K  + A     + ++G ++ +D + +  K  ++ +  ++    K 
Sbjct: 234 KYAVLNADDPASDIYKRATAA----QVITYGINETSDIRAKNVKTSAKGTTFDLVYDNKV 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    +G     N+L  +    +    ++T I  +       G   R+        FT
Sbjct: 290 VPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPG---RFEAIEAGQDFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q+S +       ++G   +     +     +A   +   
Sbjct: 347 VIVD-YAHTPDSLENVLKTTKQLSQNN---IYCIVGCGGDRDRSKRPLMAAVAVNYASKA 402

Query: 401 I 401
           I
Sbjct: 403 I 403


>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
 gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
          Length = 483

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 176/476 (36%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I+  +I    +  + GI+IDSR I P + F A+KG   DGH FI  A++ G
Sbjct: 1   MELSKLLKNIKPTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELG 60

Query: 65  AGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+       ++ G   + V   +D +G +  L       SK  ++ +TG+ GKTT  
Sbjct: 61  AKAVLCEDMPENTVEGVTYVQVASTEDAVGPVATLF-HGDPSSKLKLVGVTGTNGKTTVA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELG 168
            +L      +      + +  N+I                    L RM       +F   
Sbjct: 120 TLLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMEC 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH    + +   ++    + T +   HL      E   +AK   F+GL K      N D
Sbjct: 180 SSHAIAQKRI-GGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A    TI ++     ADF+ R  +   E  ++EV       EV    I
Sbjct: 239 DKNGMVMVQNCKA----TIKTYSTRTMADFRARIIECHFEGMYLEVD----GHEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  +S      GR +  R A  +G   +ID  Y  
Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSA--EGVTAIID--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +S + ++  +G+GR I V G     G         L  V ++     V ++ 
Sbjct: 347 TPDALENVLSAIHEV-LNGKGRVITVCG----AGGNRDKGKRPLMAVEAVKQSDKVIITS 401

Query: 409 FHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L      +   V                   GDVV++  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKG 457


>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
 gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
          Length = 500

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 182/490 (37%), Gaps = 60/490 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ I   ++       ++ I+ DSR I P + F A+KG   DGHDFI  AV+KG
Sbjct: 1   MLLRELIENINIKTLSGGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKG 60

Query: 65  AGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITG 115
           A  V+       +   +      + + +  V+D   AL++LA            +I ITG
Sbjct: 61  AVAVLSELKTDAIARKLACESDQMPV-LLQVEDSRKALSQLAATFYGHPFRTMNLIGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTLARMPVDVDFG--- 163
           + GKTTT  +L   L++  +    IG+ N  I           P +L  M +  +     
Sbjct: 120 TNGKTTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILREMADQS 179

Query: 164 ----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               I E+    L + R         +A+ T I+  HL     +++   AK+ +FEGL  
Sbjct: 180 ATDVIMEVSSHALDQGRVAD--CPFRVALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGN 237

Query: 220 TG-----TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G        +N DD + + L A + A       ++G   + D   +      +     +
Sbjct: 238 RGNQGAACAVINTDDPWGKHLMALTPA----RTVTYGLGNSCDVTAKDVSVSRKGLHARL 293

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             +  + +++    IG     N++        +  D    +  +       G   R    
Sbjct: 294 IFEKREEIDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPG---RMELV 350

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N     +I + Y   P +++ A++   QI+    GR + V G     G+  +    ++ 
Sbjct: 351 PNDRSLAIIVD-YAHTPDALEKALAATKQITS---GRILTVFGC---GGDRDKGKRYEMG 403

Query: 394 EVLSLYNISHVWLSG----FHVLALKDALPRSIHV-----HYSE-TMDGLFLFIQSSLVD 443
            +    +      S         ++ D + + +       +  E   +           +
Sbjct: 404 RIAGANSHRIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAAN 463

Query: 444 GDVVVV--KS 451
            D+V++  K 
Sbjct: 464 DDLVLIAGKG 473


>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
 gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
          Length = 499

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 164/471 (34%), Gaps = 53/471 (11%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A++G          ++G+ +DSR + P   FFA+ G   DG  FI  AV +GA  +V   
Sbjct: 16  AVKGSL-----DRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVTQK 70

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                 G   + V  V D    L ++            T+I +TG+ GKTT   +L   L
Sbjct: 71  MPAHPPGK--VTVIQVADARATLARVAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFL 128

Query: 131 SSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGE 174
           +   +    +G+ N                 + +   +A+M        + E+    + +
Sbjct: 129 NG-DQRVGLLGTINYDLGARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQ 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFF 232
            R     ++   AV T +   HL     ++     K  +F G          +N+DD + 
Sbjct: 188 QR--VAGLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYG 245

Query: 233 ELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             L A          + +FG++  AD +          S   +   G +ME+    IG +
Sbjct: 246 VTLAASLKREHQSAKLVTFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRY 305

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L  +     L  D    +  L  F    GR +R     ++G    +   Y     
Sbjct: 306 NVSNLLAAIAAAWGLGRDPFVFLARLRAFKGVPGRMERI----DEGQPYNVLVDYAHTDD 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++ A+ +L  I+P   GR   V G         +   +   +  +       + +  + 
Sbjct: 362 ALRNALGMLRAITP---GRLFVVFGCGGNRDRTKRPLMVKAVQEFA----DFAFATADNP 414

Query: 412 LA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A         +K  +     + + E           +   GD +++  K 
Sbjct: 415 RAEPLPQIFDDMKAGVLAPEKITWIEDRRRAISLALDAAKAGDCLLIAGKG 465


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 162/381 (42%), Gaps = 9/381 (2%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V + L AL KLA A R   K  +I ITGS GKT  KE L   LS  +       SYN
Sbjct: 33  FLIVANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYN 92

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++
Sbjct: 93  SQIGVPLSVWQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQ 152

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  +F   +    +  N D+       AKS     +  +S    +     + K  
Sbjct: 153 EKCMEKLTLF---KDCDVVIYNGDNELISNCVAKSMLTAREIAWSCKDIERP-LYISKVT 208

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +  + + +  +            I     +N L  L     L    D   + ++   P  
Sbjct: 209 KKEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIA 268

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +    LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ 
Sbjct: 269 ---MRLEVKEGKNNCILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQS 325

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVD 443
           + + +  +A+++    I+ +   G  + +       +   ++    D L    I  +L  
Sbjct: 326 TATLYRRVAQLIKSRGINKLIGVGAEISSCAARFEGTPERYFFPDTDALLRSGIFKTLHS 385

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
            +V+++K S    F  +   L
Sbjct: 386 -EVILIKGSRVFNFDLVSEEL 405


>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 483

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/474 (20%), Positives = 173/474 (36%), Gaps = 51/474 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++L++ I+   I       ++G++IDSR I P   F AIKG   DGH++I  A+  GA  
Sbjct: 4   NELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEM 125
           V+        +    I    V     A+ K+             +I +TG+ GKTT   +
Sbjct: 64  VLCEKAPKEPLSD--ITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTTIATL 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELGMS 170
           L      +      + +  N+I                    LA+M       +F    S
Sbjct: 122 LYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECSS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H    + +   +     + T +   HL      E   +AK   F+ L K+     N DD 
Sbjct: 182 HAIAQKRI-GGLNFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDHLPKSAFAITNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A    T+ ++     ADF+ R  +   +  ++E+  Q    EV    IG 
Sbjct: 241 NGMVMVQNTKA----TVKTYSVRTAADFKARIIECHFQGMYLEIDGQ----EVGVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L       +L    +  + A+S  H   GR         QGF  ++D  Y   P
Sbjct: 293 FNVSNLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLHSP--QGFTAVVD--YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++K  +  + ++    +G  I V G      +  +      A  LS      V ++  +
Sbjct: 349 DALKNVLLAIHEVDG--KGHVITVCGAGGNRDKGKRPLMAKQAVQLS----DKVIITSDN 402

Query: 411 VLAL--KDALPRSIHVHYSETMDGLFLFI--QSSLV-------DGDVVVV--KS 451
                 +D +   +    ++ M  +   +  + ++          DVV+V  K 
Sbjct: 403 PRFEEPQDIINDMLAGLDAQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKG 456


>gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
 gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
          Length = 522

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 106/483 (21%), Positives = 175/483 (36%), Gaps = 56/483 (11%)

Query: 6   TFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +L++   IQ    G +P   V GI+ + R   P   F A  G   DGH FI HA+++
Sbjct: 8   TLPELIRHLPIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAIER 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           G   VV     +  I  LSIP   V +   AL  L+ A       + T+I +TG+ GKTT
Sbjct: 68  GIVAVV----GMQEISGLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTGTDGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARMPVDVDFGI 164
           T  ++   L +   +   + + N  I                  V   L+RM       +
Sbjct: 124 TSNLIYQILLAAGHSAGIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRAAGLTHV 183

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---- 220
                SH  E   +T      + V+T I   HL      E   +AK  +F  L +T    
Sbjct: 184 VLEATSHGLEQHRVT-GCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSETPEKP 242

Query: 221 ----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                   LN DD  +E L++      +    S+G ++ AD +    +  +++   ++  
Sbjct: 243 HGNPRLAVLNRDDQSYEYLQSLVRVPAV----SYGLAEGADLRAENIRYEADRLRFDIVG 298

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +     V    +G +   N L      V  L  D   A + ++      GR +R      
Sbjct: 299 RDFRQPVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMSGVPGRMERIHM--G 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q F  ++D  +   P ++K A+    QI+    GR IAV G         +    +++  
Sbjct: 357 QSFHAIVD--FAHTPNALKQALLTARQIT---RGRVIAVFGSAGLRDREKRRLMAEVSAQ 411

Query: 396 LSLYNI--------SHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+  +I          +      +   A      R    +                   D
Sbjct: 412 LADISIFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMAVQMAKPDD 471

Query: 446 VVV 448
           +V+
Sbjct: 472 LVI 474


>gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
 gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
          Length = 506

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/479 (22%), Positives = 179/479 (37%), Gaps = 52/479 (10%)

Query: 9   DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           +LL  I+   I G + +  +  IS DSR+I    AF  I+G   DGH F+  A + GAGL
Sbjct: 19  ELLSYIKVKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGAGL 78

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + + D+    G   IPV  V D L   AL    +  +   K  ++ ITG+ GKTTT  +
Sbjct: 79  FIASKDIADKAGD--IPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTSYL 136

Query: 126 LTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGM 169
           +     ++      IG+ ++ I            V  TL  +  +      D  + E+  
Sbjct: 137 INHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEVSS 196

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTI 223
             L   R +        AV T ++  HL     +   A  K  +F  L          T 
Sbjct: 197 HALALDRVI--GCDFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLKTA 254

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            LN DD + E  KA + A     + ++G   K ADF   K      +   ++   G   +
Sbjct: 255 VLNIDDKYSEEYKAHTPA----EVITYGIDDKTADFYADKIFFDDWKMRFDLHFLGDVYK 310

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  + +G     N+L  +         V  AI+AL  F    G   R         + +I
Sbjct: 311 VETNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSG---RMETVHTDKNYKII 367

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + +   P  +   +  L+++  +   R I ++G     G    S   DL  +    +  
Sbjct: 368 ID-FAHTPDGLMKVLETLNKVPHN---RIITLIGHSG--GNRDSSMRPDLGRIALENSDE 421

Query: 403 HVWLSG----FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
            V+ +       V  + + L       +    E       +      + D+V++  K +
Sbjct: 422 VVFTADNPRNESVEHIVEGLVSDCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKGA 480


>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 487

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 165/452 (36%), Gaps = 36/452 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   + G+  DSR I P + +F + G  +DGH F+   V+KGA  +V   D+       
Sbjct: 10  APDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKDI--ETMHK 67

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--Y 137
            +    V++V   LN +A         + T+  +TG+ GK+T   ++    S  K     
Sbjct: 68  GVAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIKDVYSHFKPCGYI 127

Query: 138 ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             I      + +P +L            +  VD       L +S  G        V   +
Sbjct: 128 GTISISYGDVTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGLEMGRVQSVDFDV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     +E    AK ++F  L+  G   +N DD F + + A   A     
Sbjct: 188 AVFTNLTYDHLDFHGTLENYFEAKHKLFLQLKSDGVAVINVDDPFAKRMVAGCKA----H 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I S+G + +AD++       +  S  ++   G++  +  + +  +   N+L  +  +   
Sbjct: 244 IVSYGVTADADYRGDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYNLLGAIAAMCES 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   +  LS     +GR +R      Q F  ++D  +   P  M+      + I+P 
Sbjct: 304 GVALKEIVPYLSELTQVDGRMER--IDEGQAFNVIVD--FAHTPDGMEKVFEFANSITPD 359

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRSI 422
           G    IAV G     G+          E+   Y  S +         +   + + +   I
Sbjct: 360 GNA-IIAVFGS---AGKRDTKKRKVFGEIADRYCDSIILTEDDPRDENPRDIANEIKGGI 415

Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVVKS 451
                 + E           S    D V++  
Sbjct: 416 KDTNNIFIEDRYSAIRQAIESANVNDTVLILG 447


>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
 gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
          Length = 487

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 169/478 (35%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I+   I       V G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLQELLKNIEPVQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFIPKALELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +       +    V     A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKSVLC--EDMPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+ L  +         ++   E
Sbjct: 119 ATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNMLLGKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     ++    + T +   HL      E   +AK   F+GL KT     N
Sbjct: 179 CSSHAIAQKRI--GGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKTAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++     ADF+ R  +      ++E+       EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSTRSMADFRARILECHFGGMYLEID----GREVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  +  +S  H   GR +  +    +G+  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPIQSP--EGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++     G  I V G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEVLEGKGGEVITVCGA---GGNRDKGKRPLMAQEAVKQS-DKVII 400

Query: 407 SGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L      +   V                   GDV++V  K 
Sbjct: 401 TSDNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVAGKG 458


>gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
 gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
          Length = 483

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 169/474 (35%), Gaps = 47/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ +    +    +  VN I  DSR +   + F  + G   DGHD+   A++ G
Sbjct: 1   MKLLDLLKGVDYELLEGTVEKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A +V+   +    I S  + V  V++   AL  ++            +I +TG+ GKTTT
Sbjct: 61  AKVVLC--EKKIDIKSEGVTVLLVNEGRKALATMSANYYGHPTKSLKLIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L   L    K    +G+  N+I              L L ++       + ++ + E
Sbjct: 119 VYLLKSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   +     + + T +   HL      +   +AK ++FE  + +    +N
Sbjct: 179 VSSHSLQLDR--VYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFERSKAS---VIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   +      L  K I ++  + N+DF+             ++   G+    V  
Sbjct: 234 VDDDYGYRVLKDVEKLENKEIKTYSINNNSDFKASDLMLKEGDIHFKI--NGEEFNSVLP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G +SIL    ++              G+  R          I   +
Sbjct: 292 --GEYNVYNALGAVGAMSILGISNESI---RKGLLDVVVPGRCERIGYKYDIPYDIIIDF 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +K  +  L   + +   R IAV G     G+  +    +L  + +      +  
Sbjct: 347 AHTPDGLKNILETLKGFTKN---RLIAVYGC---GGDRDKVKRAELGRIGTELADLAIIT 400

Query: 407 SG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           S        +  +K+ +      +Y   E              +GDVVV+  K 
Sbjct: 401 SDNPREEDPMAIIKEIVAGITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKG 454


>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 489

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 172/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++   ++ +      +  V G++ DSR +     F AIKG   DGHDFI  A++KG
Sbjct: 1   MKLSEICAVLEKYKCNSFTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV    +   I   ++P   V +   AL+ L         SK TI+ ITG+ GKTTT
Sbjct: 61  AIAVVAEKGVDYVI---NVPQIVVPNARRALSLLSEYFYGYPSSKMTIVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
                  + S       IG+    +G  +  A                 +  ++ + + E
Sbjct: 118 SFFTKSIIESSGNKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDMLNNNIRYAVIE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L + R     V    AV T ++  HL     I+     K ++  GL++  +  LN
Sbjct: 178 ASSHALSQHRL--DGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGLDENASAVLN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            D +  +     + A     I  +G K  +A  +          +   +        +  
Sbjct: 236 ADHTSSKYFAKSTVA----QIVWYGIKDTSAHVRAEIINMGVNGTRFLLISPWGKEVIHL 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L        L  D++   K L   +   GR +  +    Q F  LID  
Sbjct: 292 KLTGNHNVYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLE--KLDYGQDFHVLID-- 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y     +++  +  L  I+     R I V G     G+  +     +  +   Y+    W
Sbjct: 348 YAHTHDALQVVLETLRGIAA---RRIILVFGC---GGDRDKGKRAKMGHIAEKYS-DLFW 400

Query: 406 LSGFH---------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         +  ++  + R S +    +    +   +  +   GDVVV+  K 
Sbjct: 401 ITNDNPRSEDPLNIIREIQRGIKRDSCYKVQLDRKVAIEEALLEA-KKGDVVVIAGKG 457


>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
 gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
          Length = 482

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 181/497 (36%), Gaps = 50/497 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L++++   +    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MDLSLILKSLEYSFVKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  +A            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSCYKDCTIIKVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             M+   L         +G+  N+I              L L ++  D     VD+ + E
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V    A+ T +   HL      E   ++K  +F+  + +    +N
Sbjct: 180 VSSHSLYLDR--VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VIN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +  K  ALG K   ++G  K+ D +       S     +   + +   +  +
Sbjct: 235 IDDSYGEKVLKK--ALGNK--VTYGVEKSCDLKAENLHMHSRGVEFDTIFKNEKETIALN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++G   +    + T  +AL       GR +      + G+  ++D  Y
Sbjct: 291 IPGKYNIYNALGSIGACLLEGISLQTIKEALGDIS-VPGRCEIVTKNYDLGYDVIVD--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
              P  ++  ++   + +   +GR I+V G   +     +     +   LS   I  S  
Sbjct: 348 AHTPDGLENILATAREFT---KGRLISVYGCGGDRDRTKRPIMGKVGSDLSDIAIITSDN 404

Query: 405 WLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS--------S 452
             +    L +KD L      +    E              + DV+VV  K          
Sbjct: 405 PRTEDPSLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHEDYQILKD 464

Query: 453 NSCGFY--RLINLLLEE 467
            +  F    +I  L++E
Sbjct: 465 RTIHFDEREVIEELIKE 481


>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
 gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
          Length = 484

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 173/477 (36%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ +   +I       + G++IDSR I     F A+KG   DGH FI  AV++G
Sbjct: 1   MKLSELLKNVSPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V++  + +      ++    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AAAVLL--ENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFEL 167
             +L             + +  N+I                    LARM        F  
Sbjct: 119 ATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    R ++ L      + T +   HL      E   +AK   F+GL K      N 
Sbjct: 179 CSSHAIHQRRISGLT-FVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A    ++ ++   + ADF+ +  +   E  ++E+   GK  EV    
Sbjct: 238 DDKNGMFMVQNTKA----SVKTYSIKRMADFRAKILECHFEGMYLEI--DGK--EVGVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  + A+S      GR +  +    +GF  ++D  Y 
Sbjct: 290 IGKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +     G  I V G      +  +     +A+     + + +  S
Sbjct: 346 HTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPL---MAQEAVRQSDTVILTS 402

Query: 408 G-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         +LA  D+  +   +   +  + +          GDV++V  K 
Sbjct: 403 DNPRDEDPQAIIDDMLAGLDSTQKKKVLTIVDRKEAIRTAAM-MAKKGDVILVAGKG 458


>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-23m63]
 gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
 gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
          Length = 484

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 164/474 (34%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  DSR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A   +V  D+             V D    + K+          K  +I +TG+ GKT+ 
Sbjct: 61  ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTL-----ARMPVDVDFGIFE 166
             +L   L+  K     IG+            N+     + L       +    D+   E
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         + + T + P HL     +E+   AK ++F   + T    +N
Sbjct: 177 VSSHSLALNR--VDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + +      + +   Y++G   NADF  R  K  S+     +        +   
Sbjct: 233 IDDEGGKKIYENIKGINV-PCYTYGVDTNADFMARDIKSDSDGVSYRLITPSYEEVIFIP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L        + L + +   G   R+    N    ++I + Y
Sbjct: 292 VPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSG---RFETVPNDKGISVIVD-Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SH 403
              P +++  +    Q +   EG+ I+V G   +     +     + +  S   I    +
Sbjct: 348 AHTPDALENVLKTTQQFA---EGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDN 404

Query: 404 VWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + +KD L     +  + H     +       S     DVV++  K 
Sbjct: 405 PRTEEPEAI-IKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVIITGKG 457


>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 484

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 178/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V+    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+    E   
Sbjct: 233 LDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLESIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 519

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 172/478 (35%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T  ++L+   G          +  ++ DSR + P   F AI G   DGH F+  A+++
Sbjct: 31  LLTEEEILEVRNG-----DRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQ 85

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA ++V   D+        +    V D    L  +A         K T+  ITG+ GKT+
Sbjct: 86  GAAVIVHQADLARYHDD--VVYLKVTDCRRLLGHIASRFFGHPSEKITVTGITGTNGKTS 143

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL-----TLARMPVDVDFGIFEL--------- 167
           +   LT  L +  K  A +G+ +N IG  +            D    I E          
Sbjct: 144 STYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGCSDLV 203

Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               S   ++  LT  V    A+ T +   HL      E    AKA +F+  EK     +
Sbjct: 204 MEASSQALDLDRLTD-VHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFDQTEK--AAII 260

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD +   L  +      K  I ++G+   AD++L      +  S   +Q   +   + 
Sbjct: 261 NRDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEKETIF 320

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G  M  N + T+        D      AL+     EGR +R +  L+      I  
Sbjct: 321 LDVLGRFMVYNAVGTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNLDFD----IVV 376

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  + +++    GR IAV G     G+        +  + +      V
Sbjct: 377 DYAHTPDALENLLKTVKELA---RGRVIAVFGC---GGDRDHGKRPLMGAIAAKEADFSV 430

Query: 405 WLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S         A+ D +  ++                 ++  +     DVV+   K 
Sbjct: 431 LTSDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKG 488


>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
 gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
          Length = 484

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/476 (20%), Positives = 168/476 (35%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I   +I       + G++IDSR I     F A+KG   DGH FI  AV++G
Sbjct: 1   MKLSELLRNISPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V++  + +      ++    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AAAVLL--ENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFEL 167
             +L             + +  N+I                    LARM        F  
Sbjct: 119 ATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    R ++ L      + T +   HL      E   +AK   F+GL K      N 
Sbjct: 179 CSSHAIHQRRISGLT-FVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A    ++ ++   + ADF+ +  +   E  ++E+   GK  EV    
Sbjct: 238 DDKNGMFMVQNTKA----SVKTYSIKRMADFRAKILECHFEGMYLEI--DGK--EVGVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  + A+S      GR +  +    +GF  ++D  Y 
Sbjct: 290 IGKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +     G  I V G      +  +     +A+     + + +  S
Sbjct: 346 HTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPL---MAQEAVRQSDTVILTS 402

Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D         +   V                   GDV++V  K 
Sbjct: 403 DNPRDEDPQAIIDDMLAGLDFTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 458


>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
 gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
          Length = 520

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 173/477 (36%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ ++  +I       + G++IDSR I     F A++G   DGH FI  AV +G
Sbjct: 37  MKLSELLRNVKPIAIHGNADVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQG 96

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V++  + + ++    +    V        K+A         +  ++ +TG+ GKTT 
Sbjct: 97  AVAVLL--EDMPAVMDEKVTYVQVASTEEDAGKVATVFYGNPSRRLKLVGVTGTNGKTTV 154

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFEL 167
             +L             + +  N+I                    L+RM        F  
Sbjct: 155 ATLLYNMFRKFGYKTGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRMVDAGCEYAFME 214

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    R ++ L      + T +   HL      E   +AK   F+GL K      N 
Sbjct: 215 CSSHAIHQRRISGL-EFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNA 273

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A     + ++   + ADF+ +  +   E  ++E++ +    EV    
Sbjct: 274 DDKNGLFMVQNTKAA----VKTYSIKRMADFRAKILECHFEGMYLEIEGK----EVGVQF 325

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  + A+S      GR +  +    +GF  ++D  Y 
Sbjct: 326 IGKFNVSNLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YA 381

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +     G  I V G      +  +     +A+     + + +  S
Sbjct: 382 HTPDALANVLAAIHDVLDTKGGHVITVCGAGGHRDKGKRPL---MAQEAVKQSDTVILTS 438

Query: 408 G-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         +L+  DA  R   +   +  + +          GDV++V  K 
Sbjct: 439 DNPRDEDPQAIIDDMLSGLDAAQRKKVLTIVDRKEAIRTAAM-MAKKGDVILVAGKG 494


>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 486

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 171/475 (36%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L  +    +       +N I+ DSR +   + F  +KG   DGH +   AV  G
Sbjct: 1   MNLKSILNGLDYELLQGTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V+  D   +I    I +    D   AL  +          K  II ITG+ GKTTT
Sbjct: 61  AKVIVIQDD--VNIDDKEITIVKCSDTRKALALMGANYYGNPSEKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L    K    IG+  N+I              L L  +        V++ + E
Sbjct: 119 AFMIKDILECAGKKVGLIGTIANYICGEKIHTERTTPESLELQELFGEMVEKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V+    + T +   HL      E    AK ++FE    +    +N
Sbjct: 179 VSSHSLALDR--VYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFER---SCIKVIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   +      L  + IYSF    ++D++       S     +V L  +  E +  
Sbjct: 234 VDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYDELMGSRDIKFKVVLDEEE-EFILG 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G+   +   ++   + +       GR +R     N  +  +ID  Y
Sbjct: 293 IPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENA-LVPGRCERVGKEYNLPYEIIID--Y 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +      +   +G+ IA+ G   +  ++ +     +   ++      V  
Sbjct: 350 AHTPDGLENILKTAKAFT---KGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLA---VIT 403

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +K  L +  ++      D +   I       DV+V+  K 
Sbjct: 404 SDNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAI-ELAEKDDVIVIAGKG 457


>gi|239814044|ref|YP_002942954.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239800621|gb|ACS17688.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1584

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 119/490 (24%), Positives = 209/490 (42%), Gaps = 31/490 (6%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGF-----VNG-------------ISIDSRSIAPQEAFF 44
            P+WT   L +   G  +   P G+     V G             ++ D  ++A  E + 
Sbjct: 1099 PVWTAEHLQRITGGRWLVEPPPGWFVNSVVRGPRHLPLLPPPALFVAADYDTLAAHENYS 1158

Query: 45   -AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
              + G + D H  +    +K AG VV          +   P+  +DD +  +  L  AAR
Sbjct: 1159 KRLPG-NPDRHADLPSLEKKLAGAVVA---HAVEGLAPDFPLLQLDDPIRGMIALGEAAR 1214

Query: 104  LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             R K  ++ +TG+VGK++T  ML   L    + +  + +YN+ +GVP  LA +  D D  
Sbjct: 1215 ARFKGLVVGVTGTVGKSSTIAMLRDLLPEAARVHTTVDNYNSRVGVPAMLANLGPDADVC 1274

Query: 164  IFELGMSHLGEIR-FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E+  S L   R  ++ + RPH+A+IT +  +     S +E+ A+ K+ IF GLE  G 
Sbjct: 1275 ILEMAQSGLWMDRGPISLMARPHVAIITEVGLSQTRQASTLEQTAAFKSRIFLGLEPGGV 1334

Query: 223  IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM 281
              +  D         ++ AL    I+  G   +A+ ++            + +  +G+S 
Sbjct: 1335 AIVP-DHIPCLAQVVRAAALTAGAIWVVGPGPDANIRVLDTHPEPGGGCRVRIATEGRSF 1393

Query: 282  EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FT 340
            E +       + +N  +    +  +  D D A   +          +        G   T
Sbjct: 1394 EYLFPIASAGLVRNSALAFAALLAMGFDADAACARMPGVRLPASVMQVRTLRTRAGIEAT 1453

Query: 341  LIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            LID+S+NA   SM+ A+  +       +    R+I VLG +  +G  SQ+ H  LAE L 
Sbjct: 1454 LIDDSWNAEVMSMRNAMEFVRTYRRADDAPVQRKIGVLGRIVNLGRDSQALHRGLAEPLL 1513

Query: 398  LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCG 456
               I H+   G  +  L++ +P  +   + +  + L  ++ + L DGD+V++K       
Sbjct: 1514 ASGIEHLVTHGAEMRWLREDVPAGLLGPHFDDAEKLADYLGTFLRDGDLVLLKGDRVGSD 1573

Query: 457  FYRLINLLLE 466
            F  +   L +
Sbjct: 1574 FGTIPQRLQQ 1583


>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 484

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 178/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + V+    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+    E   
Sbjct: 233 LDDPYGANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLESIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
 gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
          Length = 484

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 178/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + ++    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+    E   
Sbjct: 233 LDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLESIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-63q42]
 gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile ATCC 43255]
          Length = 484

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 163/474 (34%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  DSR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A   +V  D+             V D    + K+          K  +I +TG+ GKT+ 
Sbjct: 61  ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTL-----ARMPVDVDFGIFE 166
             +L   L+  K     IG+            N+     + L       +    D+   E
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         + + T + P HL     +E+   AK ++F   + T    +N
Sbjct: 177 VSSHSLALNR--VDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + +      + +   Y++G    ADF  R  K  S+     +        +   
Sbjct: 233 IDDEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L        + L + +   G   R+    N    ++I + Y
Sbjct: 292 VPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSG---RFETVPNDKGISVIVD-Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SH 403
              P +++  +    Q +   EG+ I+V G   +     +     + +  S   I    +
Sbjct: 348 AHTPDALENVLKTTQQFA---EGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDN 404

Query: 404 VWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + +KD L     +  + H     +       S     DVV++  K 
Sbjct: 405 PRTEEPEAI-IKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKG 457


>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
 gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
          Length = 484

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 179/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + ++    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+ +  +   
Sbjct: 233 LDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-EVEDFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   ++   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNVYNSLGCIICAYNLNIPMNKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTRN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila abortus S26/3]
 gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila abortus S26/3]
          Length = 483

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 168/474 (35%), Gaps = 46/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL   +    G +    V  ++ DSR++   + F A +G H DG+DF   AV+ G
Sbjct: 1   MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFSHLAVENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V  +         L +      D+  L A            K  ++ ITG+ GKTT 
Sbjct: 61  AIAVASSIYNPF----LPVVQIISSDLPRLEADLAAKYYGHPSQKLCVVGITGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLT----------LARMPVDV-DFGIFE 166
             ++ +   +  K    IG+      N+ I    T          LA+M        + E
Sbjct: 117 SHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKMVKSHLSAAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R     V   + V+T +   HL   S  EE   AK ++F  L  +G   +N
Sbjct: 177 VSSIGLAVNRLAN--VDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSMLPSSGLAVVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D          + A  I    ++G  ++AD+Q    +     +  ++  +G++      
Sbjct: 235 NDLCDAAQFIEATQAQPI----TYGIEQHADYQASHVRFSPFGTDFDLLYKGETFACYSP 290

Query: 287 GIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            IG H   N+L  + +    L  D+   I  ++      GR +             I   
Sbjct: 291 LIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLEPIFSGPCP-----IYID 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++      L  + P  +GR I V G     G+  QS    +A+V+  Y  + V 
Sbjct: 346 YAHTPDALDNVCQTLQALLPQ-DGRLIVVFGC---GGDRDQSKRKIMAQVVEKYGFAVVT 401

Query: 406 LS---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
                G     + + +                    +  S   D D+V+V  K 
Sbjct: 402 TDNPRGEDPEKIINEICSGFLKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455


>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile 630]
 gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile]
          Length = 484

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 163/474 (34%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  DSR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A   +V  D    +         V D    + K+          K  +I +TG+ GKT+ 
Sbjct: 61  ASAFIVEED----VAIKGCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTL-----ARMPVDVDFGIFE 166
             +L   L+  K     IG+            N+     + L       +    D+   E
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         + + T + P HL     +E+   AK ++F   + T    +N
Sbjct: 177 VSSHSLALNR--VDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + +      + +   Y++G    ADF  R  K  S+     +        +   
Sbjct: 233 IDDEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L        + L + +   G   R+    N    ++I + Y
Sbjct: 292 VPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSG---RFETVPNDKGISVIVD-Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SH 403
              P +++  +    Q +   EG+ I+V G   +     +     + +  S   I    +
Sbjct: 348 AHTPDALENVLKTTQQFA---EGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDN 404

Query: 404 VWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + +KD L     +  + H     +       S     DVV++  K 
Sbjct: 405 PRTEEPEAI-IKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKG 457


>gi|225629826|ref|ZP_03787749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591321|gb|EEH12438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 352

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 101/359 (28%), Positives = 168/359 (46%), Gaps = 59/359 (16%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+GM+  GEI+ L+ +  P+IAVIT I PAH  NFS + ++A AK EI  G++  G
Sbjct: 1   YLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNG 60

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------------------------ 257
           T+ L+ D+ +++ L + ++    + + SFGK KNA+                        
Sbjct: 61  TLVLSRDNKYYDYLSSHAN----RNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPV 116

Query: 258 -----------------FQLRKWKQCSEQS----------WMEVQL-QGKSMEVVHHGIG 289
                               + W   S              ++++L   + +       G
Sbjct: 117 LDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQG 176

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A ++L    +V  L  D+     AL  F   +GRG  ++   N+ +  LID+SYNA+
Sbjct: 177 EHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVKYNKKYIHLIDDSYNAS 236

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PASMK AI  LS  S     R+IA+LGDM E+G+ S  FH DL ++++  NI  V+  G 
Sbjct: 237 PASMKTAIKTLSTYSNQ---RKIALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGK 293

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +L L + LP +I   +    + L   + + + + D ++VK S       ++   + ++
Sbjct: 294 FMLELHELLPDNIRGTHFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 352


>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
           [Alistipes shahii WAL 8301]
          Length = 484

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 170/472 (36%), Gaps = 40/472 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L+      +       + G+  DSR++ P + FFA+ G   DGHD+I  AV+K
Sbjct: 1   MKKLTDILKNTPVREVCGDTAAAIGGLVYDSRAVKPGDCFFAVPGTQSDGHDYIPIAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +V       +   ++  + G      A    A       +  ++ ITG+ GKTTT 
Sbjct: 61  GAAAIVCERMPADAAEGVAYVLVGDSAGAMADMAAAFYDYPSRELKLVGITGTNGKTTTA 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGM 169
            +L   + ++      I +    I      A              R   D       +  
Sbjct: 121 TLLYDLVRAMGYKAGLISTVVYKIDGREVEATHTTPDSIRLNAMMREMADAGCAYCFMEC 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++  T  +     + + I   HL       E   AK   F+GL K      N DD
Sbjct: 181 SSHAIVQERTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGLPKGAFALTNADD 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + A     + ++     ADF+ +  +   +   + +  Q    E+    +G
Sbjct: 241 RNGRVMVQNTAAA----VSAYSLRAMADFRCKIVEMHLDGMLLRIDGQ----ELWVGLLG 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L   G  ++L  +    ++ LS+ H   GR ++ R A   G   ++D  Y   
Sbjct: 293 RFNAYNLLAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKIRAA--NGTTAIVD--YAHT 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P +++  I  + +I      + I V G     G+  ++   ++A +   Y  + V+ S  
Sbjct: 349 PDALENVIQTIEEIRT-PGQQLIVVCGC---GGDRDRTKRPEMAAIAVKYATTAVFTSDN 404

Query: 409 ---FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ D     L                         GD+++V  K 
Sbjct: 405 PRHESPEAILDDMVAGLEPGARYLRIADRAEAIRTAVMLSRPGDIILVAGKG 456


>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 171/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL++ I      +      +  I+ +S++     AF  IKG   DGH++I  A+Q 
Sbjct: 1   MKLKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYIDEAIQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA LVVV      S     I      +   AL  ++            +I +TG+ GKT+
Sbjct: 61  GACLVVVEEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
           T  M+   L +  +    IG+  N IG     A+                    VD  + 
Sbjct: 121 TTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQMKNEGVDSVVM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L    F  +     + V T +   HL     +E   +AK ++F G+ K     +
Sbjct: 181 EVSSHSLEL--FRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-GMSKKR--VV 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + +             ++ K  +A    R  K    ++  E+   G+  E+  
Sbjct: 236 NADDRWGKRIIEMYPDS-----VTYAKDSDAQVCARNIKLFVNKNQFELWYNGEKEEITL 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N L        L   +DT  K L       GR +      N+ F  +ID  
Sbjct: 291 NIPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIVES--NEKFTIVID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  +   ++++  +    EGR++ + G     G+  ++    + E+        V 
Sbjct: 347 YAHTPDGL---LNLMKTVDEVAEGRKVLLFGC---GGDRDRTKRPIMGEIAGRM-ADFVI 399

Query: 406 LSGFHVLA------LKDALP--RSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         + D L   R  +V Y           +   +  + D +V+  K 
Sbjct: 400 VTSDNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGKG 457


>gi|254821976|ref|ZP_05226977.1| hypothetical protein MintA_18732 [Mycobacterium intracellulare ATCC
           13950]
          Length = 419

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 160/372 (43%), Gaps = 31/372 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R   + DF + E
Sbjct: 32  GLRIVGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATPETDFLVLE 91

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + + ++G + LN
Sbjct: 92  MSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIAQTKSELPQSVPESGVVILN 151

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCS-EQSWMEVQLQGKS 280
            DD     +   + A     +    +++N     +             +    +  +  S
Sbjct: 152 ADDPAVAAMAGVTAA----RVVRVSRAENTSAGPSQLWAGPVSLDEVARPCFTLHHRDAS 207

Query: 281 ----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                +V     G H   N L    +     ADVD    AL+   P      R       
Sbjct: 208 GTTQAQVRLGVYGDHQVTNALCAAAVALECGADVDQVAAALAGAGPVS--RHRMHVTTRA 265

Query: 337 GFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHI 390
              T+ID++YNANP SM+A +  L+ I       P  + R  AVLG+M E+GE + + H 
Sbjct: 266 DGVTVIDDAYNANPDSMRAGLQALAWIAHGGGDRPAEKRRSWAVLGEMAELGEDAIAEHD 325

Query: 391 DLAEVLSLYNISHVWLSGF-------HVLALKDALPRSIHVHYSETMDG--LFLFIQSSL 441
            +  +    ++S + + G        H  A+ +    S         DG      +++ L
Sbjct: 326 RIGRLAVRLDVSRLVVVGSGRSMSAMHHGAVMEGSWGSADKGAVNVADGEAALALLRAEL 385

Query: 442 VDGDVVVVKSSN 453
             GDVV+VK+SN
Sbjct: 386 QPGDVVLVKASN 397


>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 495

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 172/484 (35%), Gaps = 56/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I   P   +  +  DSR I P   F  I G H D H FI +  + 
Sbjct: 2   MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA  V+   + V       I V  V D+  AL+ +             ++ ITG+ GKTT
Sbjct: 62  GARAVLTQRENVDVPAG--ISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPV-DVDFGIF 165
           T  ++   L +  +    +G+    +                +   LA M    +D  + 
Sbjct: 120 TSYLVRAILRAAGRRVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKT 220
           E+    L + R     +    AV T +   HL     +E  A AKA +FE     G++  
Sbjct: 180 EVSSHALDQGR--VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAG 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  +N DD+   +++A +       + S+G ++ A    R  +   +   M +    + 
Sbjct: 238 KTAVINADDAAGPVMRAHTTC----PVLSYGVTQQAALTARDIRLAQDGMTMRLVHGDEE 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +  H  G     N+L   G         D    AL  F    GR +  R    Q F  
Sbjct: 294 CALTLHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRA--GQDFSV 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   P  M+   +VL        GR I V G   +     +     +   ++   
Sbjct: 352 IVD--YAHTPDGME---NVLRTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMA--- 403

Query: 401 ISHVWLSG-----FHVLALKDALPRSI--------HVHYSETMDGLFLFIQSSLVDGDVV 447
              V+++          A+ D +            +    +    +F  ++++   GD V
Sbjct: 404 -DLVYITSDNPRTEDPAAILDEVESGALPVLGGKPYEKLVDRRTAIFDAVRAA-RPGDSV 461

Query: 448 VVKS 451
           V+  
Sbjct: 462 VILG 465


>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 494

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 174/479 (36%), Gaps = 50/479 (10%)

Query: 5   WTFHDLLQAIQ-GHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L +++    +   + Q  V G++ DSR + P   FFA  G   DG +F   A+ 
Sbjct: 1   MNLGEILSSVKLPRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  V+  +     + +  I V      L AL       R   +  +  ITG+ GKTTT
Sbjct: 61  RGAVAVISESLAPPDLAARWIQVEHGRHAL-ALAARTFFGRPDERLGLTGITGTNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDV-----DFGIFE 166
             +    L +     A IG+   H+              L L ++  D+          E
Sbjct: 120 AYLTDSVLRAAGGVTAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVTME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIF 224
           +    L   R   H +  H AV T +   HL     +E   +AK  +FEG          
Sbjct: 180 VSSHALALGR--VHGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD +   L+  +          +G +  AD + R      +    ++Q + +   + 
Sbjct: 238 LNTDDEYSRRLRLHARTER----LWYGMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIE 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L             +   + ++      GR +R     ++G   ++  
Sbjct: 294 SPLIGKINVYNILAACATGFSYGLAPEVVARGIASLKAVPGRFERV----DEGQPFVVVV 349

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y     +++  I+V   ++P    R I + G     G+  ++    + +  +  +   V
Sbjct: 350 DYAHTDDALRNVIAVARGLNP---RRVITLFGC---GGDRDRAKRPLMGKAAAEAS-DFV 402

Query: 405 WLSGFHVLA------LKDAL---PRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
            L+  +  +      + DAL    R+   H  E   +           +GD+V++  K 
Sbjct: 403 VLTSDNPRSEDPLTIMNDALVGIRRTDVAHVVEPDREAAIRRAIKEAREGDIVILAGKG 461


>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 391

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 136/383 (35%), Gaps = 45/383 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                 + G+ +DSR I     F     I G   D H F+  AV+ GA  ++V  D+   
Sbjct: 7   GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 66

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                IP   V D   A+            +K  +I ITG+ GKTTT  +L   LS    
Sbjct: 67  -----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 121

Query: 136 TYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLT 179
               +G+    +             P TL R        + D+ + E+    L       
Sbjct: 122 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHM--ERV 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFE 233
                 IAV T +   HL      +E    K+ +F  L             LN DD   E
Sbjct: 180 KGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVE 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             K  + A     + ++G    AD Q +      +     V      +EV  + +G    
Sbjct: 240 YFKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNV 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +  +    +     +LS     EGR +      NQ F  ++D  Y   P ++
Sbjct: 296 YNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEI--IDENQDFLVIVD--YAHTPDAL 351

Query: 354 KAAISVLSQISPHGEGRRIAVLG 376
           +  +S + + +   +G+ I V G
Sbjct: 352 ENVLSTIREFA---KGKIITVFG 371


>gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 141/307 (45%), Gaps = 12/307 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEHEVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++   G
Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---G 231

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + + +F      AD    +  + +       +     +  V  + +G H   N L    
Sbjct: 232 NRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAA 291

Query: 302 IVSILTA 308
               +  
Sbjct: 292 ASCAIGV 298


>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 484

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 173/475 (36%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + ++    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT + +F   K +DF+  + K  S  S  +V L+    E   
Sbjct: 233 LDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLESIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   +           G+    A  +     I   
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEG---LSDVVIPGRCELVAKEKKLPYSIIID 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteriovorax marinus SJ]
          Length = 455

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 193/455 (42%), Gaps = 46/455 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-------TDMVASIGSLS 82
           +S DSR+ + +  F  + G ++DG +FI   ++KG   +V              S     
Sbjct: 23  LSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQD 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK--KTY 137
           +   GVD  L  L  LA     + K     +  ITGS GKTTTKEML   LSS    + +
Sbjct: 83  VTFIGVDSPLATLQSLANKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEVH 142

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+ NNHIGVPLT+   P    + I E+G +H+GEI  L  +  P   +I+++  AH+
Sbjct: 143 ATKGNLNNHIGVPLTILSAPTCCKYMIVEMGANHVGEISDLCEIAMPEFGIISSVGAAHI 202

Query: 198 SNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             F GIE I   K  +++ +           +N +D +   +         + +  FG S
Sbjct: 203 GLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYLSQI------SPSEVLIKFGDS 256

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            + D    + K               ++E V+    Y+++      L  V+I     DT 
Sbjct: 257 SDVDVTYDEGKIVINN---------VNIENVNILEKYNLSNLASAYLLAVNIFPDKKDTF 307

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI- 372
           I A S +         +   + +    +  ++YNANP SM+++++   +   + + + I 
Sbjct: 308 ISAASEYRIPSLNRSEW---IERNGKQIFLDAYNANPTSMESSLNSFVE---NMKKKGIP 361

Query: 373 -----AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
                 VLGDM E+G+ ++  H  +A  L      +V   G +       LP  I     
Sbjct: 362 LDDVLFVLGDMNELGDYAKDEHERIARQLDGLGAKNVIFVGNYSKYYMQGLPSGIM---F 418

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           E  + L L       +   + +K+S S     LI+
Sbjct: 419 EKKEDLVLRWSELSKERSALFIKASRSLQLESLID 453


>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
 gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
          Length = 482

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 163/476 (34%), Gaps = 49/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L++ I+  ++       + G+ IDSR +     F AIKG   DGH +I  A++ G
Sbjct: 1   MTFSELIKGIKTSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++          +++  V    +                   ++ +TG+ GKTT   
Sbjct: 61  AAAILCEEAPQQPQPNVTYAVVKSTEDEVGKVATRFFGDPSKHLKLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELGM 169
           +L      +      + +  N I                    LA+M       +F    
Sbjct: 121 LLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYVFMECS 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH    + +  L      + T +   HL      E   +AK   F+GL K+     N DD
Sbjct: 181 SHAIAQKRIGGLT-FTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDGLPKSAFAITNADD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + A    ++ ++     ADF+ R  +   +  ++ +  Q    EV     G
Sbjct: 240 KNGMVMVQNTKA----SVKTYSIQSMADFKARIIECHFQGMYLAIDGQ----EVGVQFTG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L   G   +L    +  + A+S  H   GR    +    +GF  ++D  Y   
Sbjct: 292 KFNVSNLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQSP--EGFTAIVD--YAHT 347

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P ++K  +  + ++    +G  I V G      +  +      A  LS      V ++  
Sbjct: 348 PDALKNVLLAIHEVDG--KGHIITVCGAGGNRDKGKRPLMAKQAVQLS----DKVIITSD 401

Query: 410 ------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        +LA  DA      V                    DV++V  K 
Sbjct: 402 NPRFEDPQDIINDMLAGLDA-QDQKKVLTIADRKEAIRTACMLAQKQDVILVAGKG 456


>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
 gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
          Length = 500

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 169/485 (34%), Gaps = 62/485 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L   +            + G+ +DSR I     F     I G   D H F+  AV+ 
Sbjct: 10  LKELANLLLIKETIGDMNVEITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKN 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+        IP   V D   A+        +   ++  +I ITG+ GKTT
Sbjct: 70  GAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYSYPSNEMKLIGITGTNGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDV--DFGIF 165
           T  +L   L+        +G+    IG                    +M  +   D+ + 
Sbjct: 125 TSYLLEKILTDYGFQTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYCVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L             IAV T +   HL      EE    K  +F  L        
Sbjct: 185 EVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSATD 242

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN DD   E  K  + A     + ++G +  AD Q +     S+     V     
Sbjct: 243 KKIAILNADDPSVEYFKKVTSA----EVITYGINNGADVQAKSITLSSKGIQFLVSSFNG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+  + +G     N L  +    +    +     +LS     EGR +      NQ F 
Sbjct: 299 EIEINLNLVGRFNVYNALAVITATLVEGIPLTNISDSLSHVKSIEGRMEI--IDENQDFL 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y  +P +++  +S +S+ S   + + I V G     G+        + E+   Y
Sbjct: 357 VIVD--YAHSPDALENVLSTISEFS---KAKIITVFGC---GGDRDAKKRPIMGEIAGGY 408

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVV 448
           +   V+++  +         +  ++    ++ +++Y   +D               D+V+
Sbjct: 409 S-DFVYITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIQMASSNDIVL 467

Query: 449 V--KS 451
           +  K 
Sbjct: 468 IAGKG 472


>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
           Full=UDP-MurNAc-tripeptide synthetase 2
 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 492

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/482 (20%), Positives = 190/482 (39%), Gaps = 56/482 (11%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              ++L+ +++    IG +P   ++ IS +SR +     F  I G   DGH+F+  AV+ 
Sbjct: 1   MNTYELISSLKIKQQIGKLPNT-ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVEN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  +V   +   ++ +    +  V D   A+  LA           TI  +TG+ GKTT
Sbjct: 60  GATCIVAERE--VNLDTNKATLIIVPDTNKAIATLAATFYKHPSHNLTIYGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVD-----VDFGI 164
              ++   L+  + + A IG+    I               LT   M  +     V    
Sbjct: 118 VTTIINHLLTDNELSTALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAKNQGVTHVA 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKT 220
            E+    L + R     +   +A  T ++  HL     +EE A+ K ++F  L     K 
Sbjct: 178 MEVSSHGLEQGRLW--GIDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQ 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+++E  + ++       I S+G  + ADF+    K   +++  E+     S
Sbjct: 236 KIAVLNRDDNWYEYFQKRTPV----QIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGS 291

Query: 281 MEVVHHGIGYHMAQNMLMTLG-IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +V    +G     N+L  +  +    +  +   +K++       GR ++   + N+   
Sbjct: 292 FQVQTKLMGEFNVYNVLAAIASVYVKESIPLTDLVKSIEGTPTPPGRMEKLESSGNRH-- 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I   Y   P ++  AI+ L    P  + + I V+G     G+  +S    LA+  S+ 
Sbjct: 350 --IYIDYAHTPDALTKAINSLL---PFKQNKLIVVVGT---GGDRDKSIRPLLAKAASV- 400

Query: 400 NISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVV-- 449
              +V L+           +   L   +  H    ++     I+ ++      D++++  
Sbjct: 401 -ADYVILTINDPRHEDPNNILQDLENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
 gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
          Length = 495

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 172/484 (35%), Gaps = 56/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I   P   +  +  DSR I P   F  I G H D H FI +  + 
Sbjct: 2   MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA  V+   + V       I V  V D+  AL+ +             ++ ITG+ GKTT
Sbjct: 62  GARAVLTQRENVDVPAG--ISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPV-DVDFGIF 165
           T  ++   L +  +    +G+    +                +   LA M    +D  + 
Sbjct: 120 TSYLVRAILRAAGRRVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKT 220
           E+    L + R     +    AV T +   HL     +E  A AKA +FE     G++  
Sbjct: 180 EVSSHALDQGR--VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAG 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  +N DD+   +++A +       + S+G ++ A    R  +   +   M +    + 
Sbjct: 238 KTAVINADDAAGAVMRAHTTC----PVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEE 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +  H  G     N+L   G         D    AL  F    GR +  R    Q F  
Sbjct: 294 CALTLHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRA--GQDFSV 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   P  M+   +VL        GR I V G   +     +     +   ++   
Sbjct: 352 IVD--YAHTPDGME---NVLRTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMA--- 403

Query: 401 ISHVWLSG-----FHVLALKDALPRSI--------HVHYSETMDGLFLFIQSSLVDGDVV 447
              V+++          A+ D +            +    +    +F  ++++   GD V
Sbjct: 404 -DVVYITSDNPRTEDPAAILDEVEAGALPVLGGKPYEKLVDRRTAIFDAVRAA-RPGDSV 461

Query: 448 VVKS 451
           V+  
Sbjct: 462 VILG 465


>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
 gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
          Length = 483

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 169/477 (35%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I   +I       +  ++IDSR I     F A++G   DGH FI  A+++G
Sbjct: 1   MKLKELLKGIHPTTIIGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFIPKAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       +    V     A  K+          +  ++ +TG+ GKTT 
Sbjct: 61  ASAILC--ETIPEQQKAGVTYIVVSSTEDAAGKVATIFYGNPSMRLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFEL 167
             +L             + +  N+I                    L RM       +F  
Sbjct: 119 ATLLYNMFRKFGYKCGLLSTVCNYIEEEAVPADHTTPDPIALNQLLHRMAESGCEYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + ++ L      + T +   HL      +   +AK   F+ L K+     N 
Sbjct: 179 CSSHAIAQKRISGL-HFSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSLPKSSFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +     A    TI ++     ADF+ +  +   E  ++E+       EV    
Sbjct: 238 DDKNGMYMVQNCKA----TIKTYSLRNMADFKAKILECHFEGMYLEID----GREVGVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  + A+S      GR +  R    +G   ++D  Y 
Sbjct: 290 IGKFNVSNLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPIRSQ--EGVTAVVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ + ++   G+G+ I V G     G   +     +A+  +  +   +  S
Sbjct: 346 HTPDALANVLNAIHEV-LDGKGKVITVCGA---GGNRDKGKRPLMAQEAAKQSDRVIITS 401

Query: 408 G-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         +LA  +   R   +   +  + +   +      GDV+++  K 
Sbjct: 402 DNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVM-MAERGDVILIAGKG 457


>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 492

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 175/461 (37%), Gaps = 52/461 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  ++ D+R + P   F  I G   DGH+    AVQKGA LVV +  +      ++
Sbjct: 21  ENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGATLVVASEPI-----EVA 75

Query: 83  IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V+D + A+  LA            +I +TG+ GKTT   +L       K+    I
Sbjct: 76  VPVIYVNDTMKAMAILAATFYHHPSQDLRVIGVTGTNGKTTVTHLLDYIFHDHKEKTGVI 135

Query: 141 GSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+    IG  +                 R   D       + +S    ++         I
Sbjct: 136 GTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSGVATCSMEVSSHSLVQGRVWGTDFDI 195

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE------KTGTIFLNYDDSFFELLKAKSH 240
           A+ T ++  HL     +E+ A AK+ +F  L       K     LN+DD      + K+ 
Sbjct: 196 AIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKPKFAILNFDDPVGRSFEEKTA 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     ++S+G  + ADF+       +  +   +  + +  EV    +G     N L  +
Sbjct: 256 A----RVFSYGIDQPADFKATDLSITNRGTRFNLNFENRVYEVQLQLVGKFNVSNALAAI 311

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                   D+ + I+++       G   R+        F +I + Y   P  +   ++VL
Sbjct: 312 AGAYAAGLDLTSVIQSIEKISGVRG---RFEIVKGDHDFAVIVD-YAHTPDGL---LNVL 364

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL-- 414
           + ++    G    V+G     G+  ++    +AE+    + + ++ S        +A+  
Sbjct: 365 NAVNEIKTGTVFCVVGC---GGDRDRTKRPIMAEIAQQNSDTVIFTSDNPRTEDPIAILH 421

Query: 415 --KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              D L    +    +  + +   I+ +    D+V++  K 
Sbjct: 422 EVVDGLEEGTYQLIPDRREAIQAAIEQA-NTNDIVLIAGKG 461


>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. WCH70]
 gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
          Length = 490

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 179/481 (37%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +   +  +     +  I +DSR +     F  IKG   DGHDF   AV+ G
Sbjct: 1   MKLQTLLSYLHDFTTYVGENPTITSIEMDSRQVKNGALFICIKGFTVDGHDFAKQAVENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+    +      + +PV  V D   A+  L  A   +   +  +I +TG+ GKTTT
Sbjct: 61  AVAVIAERPL-----DVDVPVIVVRDSRRAMAMLADAFYGQPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++        K    IG+ +  IG      +                +   VD  + E
Sbjct: 116 THIIEHIARKANKKTGLIGTVHIKIGDHTYPTKNTTPESLLLQRTFKQMVDEGVDVAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE  +AK  +F  L      E+ 
Sbjct: 176 VSSHALHMGR--VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   +  K  + A    ++ ++G   ++D   +K          ++     +
Sbjct: 234 KFAVLNNDDPASKYYKHMTAA----SVITYGIETDSDIMAKKIDIVPSGMSFDLITPNGT 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L  +    +    +   ++A+       G   R+        FT
Sbjct: 290 VRVKTRLIGLFNVYNLLAAVSACLVSGIPLPVIVEAIEEISGVAG---RFETVDEGQNFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +  + Q +   + +   V+G     G+  ++    +A+    Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTIRQFA---QKKVYVVVGC---GGDRDRTKRPLMAKTAVKYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S           +  ++  +P   +V   +  + ++  I+ +  +GD++++  K
Sbjct: 400 DVAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQA-QEGDIILIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
 gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
          Length = 486

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 167/475 (35%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL +I    +       +  ++IDSR I    AF  IKG   DGHDF   A  +G
Sbjct: 1   MNSKELLASIPYKQVKGPLPEHIEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L++    M     ++ + V      LG L              +I +TG+ GKT+   
Sbjct: 61  ATLIITEKPMTIDNATV-VEVESTSRTLGLLAA-KFYDYPSKLLHMIGVTGTNGKTSVAG 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARM---PVDVDFGIFELGMS 170
           +L   L  + +  A  G+   ++              LT  +M     D D     + +S
Sbjct: 119 ILHSMLMELGEKSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARARDEDCSHMTMEVS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----GTIFLN 226
             G +      V    A+ T +   HL     +EE   AKA +F  L +         LN
Sbjct: 179 SHGLVLGRLAGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAILN 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + L   +       +Y++G   +A FQ +  +     +   +        V   
Sbjct: 239 ADDPWSKELAKMTP----HPVYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMK 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N L ++  +      +D  +KAL+   P EGR ++            I   Y
Sbjct: 295 LLGEFNVSNALASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAP----ISIFIDY 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ AI  +       + R I ++G     G   ++    +A   S+    +V L
Sbjct: 351 AHTPDAIEKAIDAVQDFK---KSRIIFLVGT---GGNRDKTKRPIMAAKASI--ADYVVL 402

Query: 407 SGFHVL-ALKDALPRSIHV-------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         D++   + V                          GD++++  K 
Sbjct: 403 TTDDPRDEAYDSILGDLEVGMTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKG 457


>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
 gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
          Length = 485

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 176/478 (36%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ ++  +        + G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLSELLKNVKVIASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +++  + +    +  +    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AVAILL--EDMPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARM-PVDVDFGIFE 166
             +L             + +  N+I                    LA+M     ++   E
Sbjct: 119 ATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     +     + T +   HL      E   +AK   F+GL KT     N
Sbjct: 179 CSSHAIHQHRI--GGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++   + ADF+ +  +   E  ++EV   GK  EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSIKRMADFRAKILECHFEGMYLEV--DGK--EVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  + A+S      GR +  +    +G+  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSP--EGYTAVVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +S +  +     G  I V G      +  +     +A+     + + +  
Sbjct: 345 AHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPL---MAQEAVKQSDTVILT 401

Query: 407 SG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S              +LA  DA  R   +  ++  + +          GDV++V  K 
Sbjct: 402 SDNPRDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAM-MAQKGDVILVAGKG 458


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 189/468 (40%), Gaps = 21/468 (4%)

Query: 4   LWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHA 60
           ++T  ++   I+   S     +  ++ +  DSR IA ++   FFA  G   DGH +I  A
Sbjct: 1   MYTISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGVFFAFTG-RQDGHLYIQDA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG    V+  D    +      +  V +   AL  LA   R + +  +I ITGS GKT
Sbjct: 60  YNKGVRNFVLEKDAEQEVQMPDANILWVANSWTALQSLAKHNRSQFQGPVIGITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   +S   K Y    SYN+ +GV L+L  +    +  I E G+SH+GE+  L  
Sbjct: 120 IVKEWLFQLMSPEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   V+T I  AH   F+   E    K  +F+  E   T+                 
Sbjct: 180 MIKPTYGVLTNIGIAHQQGFASKLEKTEEKLRLFKDAE---TLIYPA------KYLEAVQ 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   S+G+ ++   ++   ++  +  +++ +   GK+  +          +N +  
Sbjct: 231 IPYKPRKLSWGEEEDNQLEVYSIRKPEDGETYVTLYYGGKTFGISVPFTDSAAMENAITC 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++     D     + +    P E    R      +   ++ID+SY+ +  S++ A+  
Sbjct: 291 VAVMLRFGYDTALIAERIRNLLPVE---MRLELKNGKNNTSVIDDSYSNDLVSLQIALDF 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q   H     I +L D+  +    +     L  +++  N++ + L G  +    + L 
Sbjct: 348 LNQQHQHTNS--ILILSDIPGVTLTDEKNLNKLKRLVADRNLTQLILIGPVLRQYAEQL- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      +       ++        +++K +    F  +  LL+ +
Sbjct: 405 -GVPSQCYASTADFIANLKDIEFRDATILLKGARDFHFEDISKLLVAK 451


>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
 gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
          Length = 487

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/477 (21%), Positives = 177/477 (37%), Gaps = 51/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L  I+   I       ++ +  DSR I   + F AIKG + DGHD+I  AV+KG
Sbjct: 1   MKLNKILNGIEHKIINGKNDLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+V   +   +    I    V++    +  LA            +I ITG+ GKTTT
Sbjct: 61  ATAVIVEKKLKKYLSG--ITYIEVENTRKEMAVLAKNFFANPLADIDLIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----------------PVDVDFGIFE 166
             ++   L       A  G+  N I      A                     V + + E
Sbjct: 119 AYLIYNILRKNSFKTAMFGTIKNIIAGEEISATRTTPESLDLYRYFSQAKTAGVQYIVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   H +   +AV T ++P HL     +     AK+++F  L    +  +N
Sbjct: 179 VSSHALDLYR--VHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQLSPDASAVIN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVH 285
            DD     +  KS A   K   S   ++NAD   + +K   +Q+ +  Q QG        
Sbjct: 237 LDDKNSGFMLEKSKAHNFKYSLS---NQNADLYCQNYKL--KQNSLNYQSQGLIKRNFQL 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +  V +L    D  + +L       G   R+        F LI + 
Sbjct: 292 KLGGIFNIYNSLAAVLSVFLLGISADKIVNSLEEIKGVPG---RFELINAGQDFQLIVD- 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  M+  +    +I+ +   R I + G     G+  +S    +A+ L+  N  +V+
Sbjct: 348 YAHTPDGMENVLEAAKEITKN---RLIVLFGC---GGDRDRSKRPVMAK-LAEDNADYVF 400

Query: 406 LSGFHVLA---------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKS 451
           L+  +  +         +K     S   +    +    +   I +     D++++  
Sbjct: 401 LTNDNPRSEDPEFILSEIKSGFSNSFSNYEVISDRKKAIVEAI-NFAKKDDIILILG 456


>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
 gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
          Length = 494

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/487 (18%), Positives = 166/487 (34%), Gaps = 59/487 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+++ +Q   I       V  I+ DSR++     F A+ G   DGH+++  AV+ 
Sbjct: 1   MKQLQDIVKTLQTPHIEGNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  V+V+  +  S     + V  V+D   A+            +   +I +TG+ GKTT
Sbjct: 61  GAVAVLVSKPVEVSGD---VCVITVEDTRKAMMACVPYFFDYPANSMRMIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIF 165
           T  M+   L         IG+ +  I                +   L +M  + V   + 
Sbjct: 118 TTHMIRHILKGQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L   R     V    AV T +   HL      E   +AK ++FE +      + 
Sbjct: 178 EVSSHALALGR--VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKS 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD +   +  K+ A     I ++             +   + S   V   G 
Sbjct: 236 GKGAIINIDDEYGHRVIEKTTA----PIITYSIDGKGTLNAHDVEMTPKSSRYTVSYDGN 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V  +  G     N L  +G   +    ++   KA+  F    G   R+        F
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKAMKTFSAVPG---RFELIEEGQPF 348

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y
Sbjct: 349 AVVVD-YAHTPDGLENILQTAKAIQEN---RIIVVFGC---GGDRDATKRPIMGRIAAQY 401

Query: 400 NISHVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
               V+++  +                +K+ L    H                +   GD+
Sbjct: 402 G-DIVYVTSDNPRTEDPVQIVKDVEVGVKEGLREGSHYEVIVDRREAIQHAIQNAKPGDI 460

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 461 VLIAGKG 467


>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
 gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
          Length = 485

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 171/477 (35%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ ++  +        + G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLSELLKNVKVIASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +++  + +    +  +    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AVAILL--EDMPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARM-PVDVDFGIFE 166
             +L             + +  N+I                    LA+M     ++   E
Sbjct: 119 ATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     +     + T +   HL      E   +AK   F+GL KT     N
Sbjct: 179 CSSHAIHQHRI--GGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++   + ADF+ +  +   E  ++EV   GK  EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSIKRMADFRAKILECHFEGMYLEV--DGK--EVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  + A+S      GR +  +    +G+  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSP--EGYTAVVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +S +  +     G  I V G      +  +     +A+     + + +  
Sbjct: 345 AHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPL---MAQEAVKQSDTVILT 401

Query: 407 S----GFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S         A+ D +       +   V                   GDV++V  K 
Sbjct: 402 SDNPRDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKG 458


>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
 gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
          Length = 494

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 166/484 (34%), Gaps = 59/484 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++ +    +       +  ++ DSR++     F A+ G   DGHD++  AV+ GA 
Sbjct: 4   LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            V+V+  +  S     + V  V+D   A+            +   +I +TG+ GKTTT  
Sbjct: 64  AVLVSKPIEISSD---VCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNGKTTTTH 120

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFELG 168
           M+   L +       IG+ +  I                +   L +M  + V   + E+ 
Sbjct: 121 MIRHILRAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TGT 222
              L   R     V    AV T +   HL      E   +AK ++FE + K         
Sbjct: 181 SHALALGR--VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKG 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD++ + +  K+ A     I ++    +            + S   V   G    
Sbjct: 239 AVINIDDAYGQRVVEKTTA----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYT 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G     N L  +G   +    ++   KAL  F    G   R+        F ++
Sbjct: 295 VAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPG---RFELIEEGQPFAVV 351

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y   
Sbjct: 352 VD-YAHTPDGLENILQTAKAIQEN---RIIVVFGC---GGDRDATKRPIMGRIAAQYG-D 403

Query: 403 HVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+++  +                +KD L    H                    GD+V++
Sbjct: 404 VVYVTSDNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLI 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 492

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 186/480 (38%), Gaps = 60/480 (12%)

Query: 9   DLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           +L++ ++     I       +  ++ D+R + P   F  I G  ++GH+    AVQKGA 
Sbjct: 5   ELIKPLKSKKFSIDFSDSLEITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
           LVV +  +      + +PV  V++ + A+  LA A          +I +TG+ GKTT   
Sbjct: 65  LVVASEPL-----DVEVPVVYVNNTMKAMAILAAAFYDYPSQNLRVIGVTGTNGKTTVTH 119

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFELG 168
           +L       K+    IG+    I                +  TL  M  + V     E+ 
Sbjct: 120 LLDYIFHDHKEKTGVIGTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENGVQTCSMEVS 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222
              L + R         IA+ T ++  HL     +E+ A AK+ +F  L      +K   
Sbjct: 180 SHSLVQGR--VWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKPKF 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN+DD      + K+ A    +++S+G  ++ADF+    +  ++ +   +  + +  E
Sbjct: 238 AILNFDDPVGRSFEEKTAA----SVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQVYE 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N L  +        ++ + I++LS      G   R+     +  F +I
Sbjct: 294 VQLQLVGKFNVSNALAAIAGAYAAGLELPSVIQSLSQISGVRG---RFEIVKGEYDFAVI 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  +   ++VL+ ++    G    V+G   +     +    ++A+     N  
Sbjct: 351 VD-YAHTPDGL---LNVLNAVNEIKTGNVFCVVGCGGDRDRTKRPIMAEIAQ----KNSD 402

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V  +  +            +   L    +    +  + +   I+ +    D+V++  K 
Sbjct: 403 TVIFTSDNPRTEDPNAILNEVVAGLEEESYQLIPDRREAIQSAIKQA-APNDIVLIAGKG 461


>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-66c26]
 gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CIP 107932]
 gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-76w55]
 gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-97b34]
 gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-37x79]
 gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CD196]
 gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile R20291]
 gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-32g58]
 gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile CD196]
 gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile R20291]
          Length = 484

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 163/474 (34%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  +SR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A   +V  D+             V D    + K+          K  +I +TG+ GKT+ 
Sbjct: 61  ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTL-----ARMPVDVDFGIFE 166
             +L   L+  K     IG+            N+     + L       +    D+   E
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         + + T + P HL     +E+   AK ++F   + T    +N
Sbjct: 177 VSSHSLALNR--VDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + +      + +   Y++G    ADF  R  K  S+     +        +   
Sbjct: 233 IDDEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L        + L + +   G   R+    N    ++I + Y
Sbjct: 292 VPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSG---RFETVPNDKGISVIVD-Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SH 403
              P +++  +    Q +   EG+ I+V G   +     +     + +  S   I    +
Sbjct: 348 AHTPDALENVLKTTQQFA---EGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDN 404

Query: 404 VWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + +KD L     +  + H     +       S     DVV++  K 
Sbjct: 405 PRTEEPEAI-IKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKG 457


>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
 gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
          Length = 256

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G     +  + G++IDSR  AP   F  +KG   DGH FI   ++
Sbjct: 4   MTLKNITAACHGTFHGDSSFLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +   D      SL+ P   V+    AL  +A   R++    ++ ITGSVGKT+T
Sbjct: 64  QGALATLTEED----PSSLTCPCIHVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS         G++NN IG+PLT+  +  + +  + E+G+ H GE+  L  + 
Sbjct: 120 KETIASVLSRKYNVLKTEGNFNNGIGLPLTIFNLTEEHEVAVLEMGIDHFGEMHELASIS 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +P I VIT I  AH+ N    + I  AK E+F+ L    ++ LN DD     +  
Sbjct: 180 QPDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRPNASVILNGDDDKLSTVAE 234


>gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
 gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
          Length = 485

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 169/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL  I       G +    V  ++ DSR+I   + F A KG   DG+DF   AV+
Sbjct: 1   MNLKELLHNIDIDAKVYGKISPIEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKT 120
            GA  VV +         LS+      ++  L A            K  ++ ITG+ GKT
Sbjct: 61  NGAIAVVSSIYNPF----LSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSY-----NNHIGVPLT----------LARM-PVDVDFGI 164
           T   ++     +  K    IG+      NN I    T          LA M   ++   +
Sbjct: 117 TVSHLIKFLFDACDKPSGLIGTIEHILGNNRIQDGFTTPESCLLQKYLAEMVKSNLTAAV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L  +  L + V   + V+T +   HL      EE   AK ++F  L  +G   
Sbjct: 177 IETSSIGL-VLDRLAN-VEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQLSDSGLAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N D    +     + A+ +    ++G  + AD++    +     +  ++  +G+     
Sbjct: 235 VNNDLPQAKQFLEATRAVPV----TYGIEQLADYRASNLRFSPFGADFDLIHKGEIFPCH 290

Query: 285 HHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              IG +   N+L  + +    L  D+   +  ++      GR +  +          I 
Sbjct: 291 SPLIGQYNVYNVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLEPIQSGPCP-----IY 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++      L  + P   G+ I V G     G+  +S    +A+V+  Y  + 
Sbjct: 346 IDYAHTPDALDNVCQTLRTLLPS-GGKLIVVFGC---GGDRDRSKRKIMAQVVEKYGFAV 401

Query: 404 VWLS---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           V      G     + + +                    +  S   D D+V+V  K 
Sbjct: 402 VTSDNPRGEDPETIVNEICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 457


>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 531

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 152/411 (36%), Gaps = 39/411 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               LL  ++   I    Q  V G++  S  +A  E F A+KG   DGH +I  A+++GA
Sbjct: 11  NLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERGA 70

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
            +VV+   +  + G + +    V D   AL  +A A         T++ ITG+ GKTTT 
Sbjct: 71  AVVVLEDAVEPTPGVVCV---QVPDTRLALAHMAAAFYDHPSCNLTVVGITGTNGKTTTS 127

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARM-PVDVDFGIFEL 167
            +L     +       IG+ N   G  +                LA M    VD  I E+
Sbjct: 128 YLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDCAIMEV 187

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG----T 222
               L   R     VR    + T ++  HL     +E   + K+ +F E L   G     
Sbjct: 188 SSHALDLKR--VQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDGPQL 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD + + L  ++       + ++G +  AD +        +     +      ++
Sbjct: 246 AVINRDDPWGQKLLPQTS----PPVLTYGFAAGADIRPEDITLTHQGIQARLHTPYGRLD 301

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +V   +G +   N+L   G    L    +  +  L+     +GR +            L+
Sbjct: 302 IVSPLMGRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAP----GQPLV 357

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              Y   P +++  ++ L  +      R I V G   +     +     + 
Sbjct: 358 LVDYAHTPDALEKVLAALKALD---FDRIITVFGCGGDRDRRKRPLMGQVV 405


>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 485

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 166/477 (34%), Gaps = 55/477 (11%)

Query: 8   HDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           ++LL+ ++G            +  + +DSR +     FF I G   DGHDF   AV+KGA
Sbjct: 2   NELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTK 123
             VV    +      L +PV  V D   A+ +L          +  +I +TG+ GKT+  
Sbjct: 62  VAVVAERPLA-----LDVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGKTSVT 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFEL 167
            +L        +    IG+    IG      R                +   V+  + E+
Sbjct: 117 HILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAVMEV 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIF 224
               L   R         IAV T + P H+     +E    AK+ +F  L       T  
Sbjct: 177 SSHALHLGR--VRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD   + L   + A     + ++G  K AD      K  +  +   + + G+  +V 
Sbjct: 235 INSDDPASDRLIQMTTA----DVVTYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDVQ 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N L       +    + T     +      G   R+        FT+I +
Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIK---ASLEKVTGVAGRFEPVDEGQDFTVIVD 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +  +   + +       V+G     G+   +    +  +   Y    +
Sbjct: 348 -YAHTPDSLENVLQTVQDFADND---IHVVVGC---GGDRDATKRPVMGRIAVQYADRTI 400

Query: 405 WLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + S           +  + + L    +    +    +   I ++   GD+VV+  K 
Sbjct: 401 FTSDNPRTEDPDAILADITEGLDPDQYTVIVDRKTAIEQAIAAA-NTGDIVVIAGKG 456


>gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 495

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 178/488 (36%), Gaps = 63/488 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++    ++   I       V+G+ IDSR I   + F  I G   DGHDF   AV  G
Sbjct: 1   MQLNEFASLLKTSQIVGDETVEVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV   +      +++P   V +   A+                II +TG+ GKTTT
Sbjct: 61  AVALVVERRL-----DVNVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   L         +G+    I                +   LA M   D D+ + E
Sbjct: 116 TYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L   R     +     V T +   HL     ++    AKA++F  +        +
Sbjct: 176 VSSHALDFGR--VKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEK 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     LN DD   E  +  + A     + ++G  K  D +    +  +E +   +    
Sbjct: 234 QRSYAILNVDDEASETFQRLTSA----EVITYGIEKECDVRASNIRITAEGTEFTLTTFE 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +    +G     N L  +         ++   K+L+      GR +    +  Q +
Sbjct: 290 GTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEV--VSEGQDY 347

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D  Y   P  ++ A+S + + +   EG    V G     G+  ++    + +V + 
Sbjct: 348 LVLVD--YAHTPDGLENALSTVKEFA---EGHVYCVFGC---GGDRDRTKRPLMGKVTAK 399

Query: 399 YNISHVWLSGFH------VLALKDALPRSIHVHYSETMDGLF----LFIQSSLV---DGD 445
           Y+  H++++  +         L+D +P  +    SE    L     L IQ ++      D
Sbjct: 400 YS-DHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKD 458

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 459 VVLIAGKG 466


>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 494

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 168/487 (34%), Gaps = 59/487 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+++ +Q   +       +  I+ DSR++     F A+ G   DGH+++  A++ 
Sbjct: 1   MKQLQDIVKTLQAPQVTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  V+V+  +  S     I V  V+D   A+            +   +I +TG+ GKTT
Sbjct: 61  GAVAVLVSKPVEVSGD---ICVITVEDTRTAMMACVPYFFDYPANSMRMIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIF 165
           T  M+   L +       IG+ +  I                +   L +M  + V   + 
Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L   R     V    AV T +   HL      E   +AK ++FE +      + 
Sbjct: 178 EVSSHALALGR--VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKS 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD++   +  K+ A     I ++    N            + S   V   G 
Sbjct: 236 GKGAIINIDDAYGHRVVEKTKA----PIITYSIDGNGTLNAHDVDMTPKSSRYTVSYDGH 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V  +  G     N L  +G   +    ++   KAL  F    G   R+        F
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPG---RFELIEEGQPF 348

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y
Sbjct: 349 AVVVD-YAHTPDGLENILQTAKAIQEN---RIIVVFGC---GGDRDATKRPIMGRIAAQY 401

Query: 400 NISHVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
               V+++  +                +K+ L    +                +   GD+
Sbjct: 402 G-DVVYVTSDNPRTEDPVQIVKDVEAGVKEGLREGSYYEVIVDRREAIQHAIQNAKPGDI 460

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 461 VLIAGKG 467


>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
          Length = 512

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 155/435 (35%), Gaps = 43/435 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N + T   L   +    +       + GI  DSR +     F  I G H DGH FI  AV
Sbjct: 12  NNMKTIGQLADLLTDAVVIGNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAV 71

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
             GA  +V   + V       I V  V ++  AL+ +          K  ++ ITG+ GK
Sbjct: 72  AAGASAIVTTREDVEVPEG--IAVLRVKELQPALDTIVPYFHDYPARKMRVVGITGTNGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFG 163
           TTT  +    L         IG+    I                +  TLA M    +D+ 
Sbjct: 130 TTTSYITRAILRKAGYKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYV 189

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-- 221
           + E+    L + R     +    AV T +   HL     ++    AKA++F+ + +TG  
Sbjct: 190 VMEVSSHALDQNR--VAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCK 247

Query: 222 ---TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277
              T  +N DD+    + A +         ++   K AD +       +  +   +  + 
Sbjct: 248 QGKTAVVNIDDAVGATMLAHAKCKH----LTYAIEKEADLRATDILVHANGAEFVLHHES 303

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              M +  H  G     N++  +G       D     + L  F    G   R+       
Sbjct: 304 FGEMPLKLHITGIFNVYNVMSAVGAALAEHIDAAVIKETLEAFTAVPG---RFELVKAGQ 360

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            F++I + Y   P  ++  +    +I+   + R IAV G     G+  ++    +  + +
Sbjct: 361 DFSIIVD-YAHTPDGVENVLKTARKIA---KKRIIAVFGC---GGDRDRTKRPIMGRLAA 413

Query: 398 LYNISHVWLSGFHVL 412
                 V  +  +  
Sbjct: 414 EL-ADVVIATSDNPR 427


>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 496

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 172/483 (35%), Gaps = 50/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   + G          V G+  D+R + P   F AI+G   DGH FI  AV KG
Sbjct: 1   MKLQHLFSILPGIPENAFSHIEVTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV        G   + V  V +    L+            +   + +TG+ GKT+ 
Sbjct: 61  AAALVVEDKAKIPEGYEGV-VVQVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--------------DVDFGIFELG 168
             M    L+  K     IG+ N+H+G  +  + M                        + 
Sbjct: 120 TYMTEAILNHGKIPTGVIGTVNHHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTI 223
           +S     +     V  +  + T +   HL   + +E    AK  +F  L     ++    
Sbjct: 180 VSSHALDQRRVDSVPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFA 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D F   L+    A+    ++++G+ K++D +    K     +  +V       EV
Sbjct: 240 IVNTADKFGRRLRVADPAV----LWTYGE-KDSDIRYEILKMDFALTHFKVWTPVGEGEV 294

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  LG        ++  I+AL  F    G   R +   N    ++  
Sbjct: 295 RLPMSGTHNVMNALAALGAGLSAGLPLNICIEALDRFTGVPG---RLQSVPNDKNLSVFV 351

Query: 344 ESYNANPASMKAAISVLSQISPH--GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + Y   P +++  +  L+++  +   + R   + G     G+  +     +AE+   Y+ 
Sbjct: 352 D-YAHTPDALENVLMALTKVRENLQSQSRIWTIFGC---GGDRDKGKRPLMAEMALKYSD 407

Query: 402 SHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             V  S              +LA      ++      +  D +   ++ +  +GDV+++ 
Sbjct: 408 EVVITSDNPRTEDPQTIIQDILAGVGGANKAKATTVVDRKDAITQTLKRA-QEGDVILIA 466

Query: 450 -KS 451
            K 
Sbjct: 467 GKG 469


>gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
 gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
          Length = 495

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/485 (17%), Positives = 158/485 (32%), Gaps = 57/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    +         GI  DSR + P + F  + G   DGHD+   AV  G
Sbjct: 1   MQLQQLASLLAVSRVMGDGTVDCRGIGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +VV  ++      + +P   V D   A+  LA         +  +I ITG+ GKTT 
Sbjct: 61  AAALVVEREL-----DVPVPQLVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARMPVD-VDFGIFE 166
             ++   +         IG+                         L  M    V   + E
Sbjct: 116 TYLIEKIMQDAGVNTGLIGTIQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R          A+ T +   HL   + +EE  +AK  +F  L         
Sbjct: 176 VSSHALEQGR--VKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDAS 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +    LN DD     L+A++ A     + ++G  K++D Q  +    ++ +   V    
Sbjct: 234 NSKYAVLNADDPASSYLQAQTAA----QVITYGVEKDSDVQASRITISAKGTSFHVSTFK 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++    +G     N L  +    +    +    ++L      +G   R         
Sbjct: 290 GETDIELRMVGKFNVYNALAAISAALLEGISLVDIKRSLESIAGVDG---RVEPVDAGQP 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F +I + Y   P  ++  +  + + +    G+   V G   +     +     +A   S 
Sbjct: 347 FAVIVD-YAHTPDGLENVLRTVKEFAT---GKVWCVFGCGGDRDRTKRPLMGKIAARYSD 402

Query: 399 YNISH----------VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++             V L       + + +P   +    +    +   +       DVV+
Sbjct: 403 HSFITSDNPRTEDPIVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAV-EMASPDDVVL 461

Query: 449 V--KS 451
           +  K 
Sbjct: 462 IAGKG 466


>gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 300

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 139/300 (46%), Gaps = 10/300 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+    LL    + LG
Sbjct: 187 PDVAIITMIGQSHLKTLGSREEIAKAKFEIIDGLHDDGLFLYNGDEP---LLSQNINMLG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I++  SFG+    D      +        ++      ++      G H   N ++ + + 
Sbjct: 244 IES-KSFGRKYTNDLFPTNVQLDGYGVHFKLNH--TKIQYDVPLHGKHNILNAIVGIAVG 300


>gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
 gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
          Length = 502

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 171/478 (35%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL  I+           +  I  DSR +   + F A+KG   DGH +I  AV  
Sbjct: 1   MTNLKQLLHHIEVIQTRGNAPESIENIHFDSRKVQANDLFVAVKGTQADGHQYIGQAVAL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA +VV   +      S S     V +   AL  LA         K  ++ ITG+ GKTT
Sbjct: 61  GAKVVVC--ETFPKNLSDSATYIQVANSAKALGWLASNYYDHPSKKLKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIF 165
           T  +L             + +  N+I             PL L R+  +           
Sbjct: 119 TVTLLHQLFRKFGYRVGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +  ++     +    A  T I+  HL          +AK + F+ L  T    +
Sbjct: 179 EVSSHAV--VQERIAGLHFTGAAFTNISHDHLDFHETFANYINAKKQFFDQLPPTAFALI 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A   KT  +F   + ADF+ R  +   +  +ME+      +EV  
Sbjct: 237 NADDKRGMVMLQNTVA---KTQRTFALKQFADFKARVVESSLQGLFMEID----DVEVWF 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IGY  A N+L    I  +L  D    +  LS      G   R+   + +   T + + 
Sbjct: 290 QMIGYFNAYNLLGIYAIAVLLGEDTTETLTLLSGLQSVPG---RFEKIIGESGATGVVD- 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y+  P +++  +  + ++      + I V+G     G    S    +A++   Y+   ++
Sbjct: 346 YSHTPDALENVLQTIFELR-QSGQKIITVVGC---GGNRDASKRPIMAQIACQYSDVVIF 401

Query: 406 LSG-----FHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  L+D     ++          +               D+++V  K 
Sbjct: 402 TSDNPRNEPPMQILEDMQEGVSIDDEPKTSLIASRKDAIRKACELAQKQDIILVAGKG 459


>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 2; AltName:
           Full=Meso-A2pm-adding enzyme 2; AltName:
           Full=Meso-diaminopimelate-adding enzyme 2; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           2
 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum ATCC 824]
 gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum EA 2018]
          Length = 483

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 157/418 (37%), Gaps = 39/418 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LLQ I    I       + GIS +S+ +     F +IKG  +DGHDFI  A Q G
Sbjct: 1   MKLKQLLQNIDYDLIKGDININIEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V+++ D   SI + ++    V +   AL  L          +  ++ +TG+ GKTT 
Sbjct: 61  AAAVIIDEDFHDSIENTTL--VKVKNSKVALACLCNLFYEEPSRELNLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGS--------------YNNHIGVPLTLARMPVD-----VDFG 163
              +   L +   +   IG+               N      L L ++  D         
Sbjct: 119 IHYIRDMLEAFGNSTGTIGTLGYELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNA 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  S L  ++         + V T ++  HL     IE   + K ++F+        
Sbjct: 179 VMEVTSSAL--MKHRVDYCSFKVGVFTNLSQDHLDEHGTIENYKNEKIKLFKMCP---VG 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    +  K    G    +++G   NAD                V  +G S +V
Sbjct: 234 VINLDDNIAGEIIEK----GTCEFFTYGVLTNADLTASDMVYKPNSVSFNVHYKGISSKV 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N+L  +G +  L  D ++ +K +S   P  GR +     LN+       
Sbjct: 290 KVNVPGEFTVYNVLAAIGSLLCLGIDFESILKLVSSIKPVLGRLETINNPLNKNIII--- 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             Y   P S++  + +  +++    GR I V G   +  +  +        +LS Y I
Sbjct: 347 -DYAHTPDSLEKLLIMAREMT---NGRIITVFGCGGDRDKSKRGLMGMAVGILSDYCI 400


>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 494

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 166/473 (35%), Gaps = 41/473 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ I    I    +  +  I  DSR + P   F  I+G   DGH FI  A++KG
Sbjct: 1   MKLMDLLEEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V   DM    G   +    V D    + +L      R      +I +TG+ GKT+T
Sbjct: 61  AIAIVAQKDMTGLDGVTWV---QVKDTRQVMAQLGSTFYGRPSQHLELIGVTGTNGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L + ++    IG+  N IG     A+                    V   + E
Sbjct: 118 TYMIKKILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKEMADEKVTECVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L             + V T + P HL     I+    AK ++F          +N
Sbjct: 178 VSSHALAL--ERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFYLTTVAN--VIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++  +   L   ++ +FG  K A    +      +    ++        V   
Sbjct: 234 IDDPHGAMIAEEVKKLK-PSLITFGIKKQATVMAKNIATTLKDVTFDLVTPVGEARVTVK 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G   A N L ++     +    D  ++ +       G   R+   L    F++I + Y
Sbjct: 293 IPGIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPG---RFESVLGIKDFSVIVD-Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SH 403
              P +++  I     ++ H   R I V G   +     +S   +++  LS  ++    +
Sbjct: 349 AHTPDAIENVIQAAKNVTEH---RVITVFGCGGDRDRTKRSVMGEISGSLSDLSVITSDN 405

Query: 404 VWLSGFH-VLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + +L + +A  +     Y   E       +       GD+V++  K 
Sbjct: 406 PRTEDPYKILMMIEAGIKKTKGLYTIIEDRREAIRYAMKEAKKGDIVLIAGKG 458


>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
          Length = 484

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 177/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KG
Sbjct: 1   MILKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V  D+        I +  V D   AL  ++       + K  II ITG+ GKTT+
Sbjct: 61  AKTLIVQEDVSVQED---ITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   L         IG+  N+I                L  +        V++ + E
Sbjct: 118 AFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   + ++    + T +   HL      E   +AK ++FE    +    +N
Sbjct: 178 VSSHSLELDR--VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHS---IIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   +       G+KT  S F   K +DF+  + K  S  S  +V L+    E   
Sbjct: 233 LDDPYGANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVNLESIE-EFSI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G +   N L  +     L   +D   + LS      GR +      N  +  +ID  
Sbjct: 292 NIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIID-- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +S +   + +   R I+V G     G+  +     + ++    +   + 
Sbjct: 349 YAHTPDGLENILSTVKAFTKN---RMISVFGC---GGDRDKVKRPQMGKIGCELSDIAII 402

Query: 406 LSG-----FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +  + D +    + ++              +  ++GDV+V+  K 
Sbjct: 403 TSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
 gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
          Length = 485

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 98/476 (20%), Positives = 167/476 (35%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ ++  +I       + GI+IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLTDLLKGVKTLNINGNADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V          ++       +                K  ++ +TG+ GKTT   
Sbjct: 61  AKAVLVEDMPTDLKEDVTYVQVASTETEVGKIATIFYGNPTKKLKLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELG 168
           +L             I +  N+I             P+ L ++  +      ++   E  
Sbjct: 121 LLYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFMECS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              + + R     +     V T +   HL      E   +AK   F+ L K      N D
Sbjct: 181 SHAIHQHRI--GGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSLSKNAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A     I ++   + ADF+ +  +   E  ++EV   GK  EV    I
Sbjct: 239 DKNGMIMVQNCKA----NIKTYSMQRMADFRAKIIECHFEGMYLEV--DGK--EVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    D  + ALS      GR         +GF  ++D  Y  
Sbjct: 291 GKFNVSNLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSP--EGFTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  +  +     G+ I V G     G   +     +A+     + + +  S 
Sbjct: 347 TPDALENVLGAIHDVLEGKNGKVITVCGA---GGNRDKGKRPLMAQEAVKQSDTVILTSD 403

Query: 409 -----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        ++A  DA  R   +   +  + +          GDV++V  K 
Sbjct: 404 NPRFEDPQAIIDDMVAGLDANQRKKVLTIVDRREAMRTAAM-MAKKGDVILVAGKG 458


>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
 gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
          Length = 494

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 167/487 (34%), Gaps = 59/487 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+++ +    +       +  ++ DSR++     F A+ G   DGH+++  AV+ 
Sbjct: 1   MKQLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVES 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  V+V+  +  S     + V  V+D   A+            +   +I +TG+ GKTT
Sbjct: 61  GAVAVLVSKPVEVSSD---VCVITVEDTRAAMMSCVPYFFDYPANSMRMIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIF 165
           T  M+   L +       IG+ +  I                +   L +M  + V   + 
Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------ 219
           E+    L   R     V    AV T +   HL      E   +AK ++FE + K      
Sbjct: 178 EVSSHALALGR--VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKS 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD++   +  K+ A     I ++    +            + S   V   G 
Sbjct: 236 GKGAVINIDDAYGHRVVEKTTA----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGH 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V  +  G     N L  +G   +    ++   KAL  F    G   R+        F
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPG---RFELIEEGQPF 348

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y
Sbjct: 349 AVVVD-YAHTPDGLENILQTAKAIQEN---RIIVVFGC---GGDRDATKRPIMGRIAAQY 401

Query: 400 NISHVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
               V+++  +                +KD L    H                +   GD+
Sbjct: 402 G-DVVYVTSDNPRTEDPIQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAKPGDI 460

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 461 VLIAGKG 467


>gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
 gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
          Length = 498

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 166/463 (35%), Gaps = 48/463 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
              P+  +  I+ +S+ + P   F AI+G   DGH +I  A+ +GA LV+   D+     
Sbjct: 22  NNNPEIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYIGDAISRGAILVIYEHDLDEYQD 81

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            +      V +    L  ++           +I  +TG+ GKTT   ML        +  
Sbjct: 82  DIM--YVKVKNARHMLGTMSSRFYGHPSEALSITGVTGTNGKTTITHMLKSIFQKDGRKC 139

Query: 138 ACIGSYNNHI----------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTH 180
             IG+ NN I                 V   ++ M        + E+    L   R   +
Sbjct: 140 GLIGTINNQIGDEIIDNAGRTTPDSLEVQEIISEMVEAGCQNLVMEVSSHALDLDR--VN 197

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V     + + +   HL      E    AKA++F    K     +N DD + + L  +  
Sbjct: 198 GVAFDYGIFSNLTQDHLDYHKTFENYFEAKAKLFTYTSKAN--IINCDDVWGKKLYDRCA 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +YS+G +   DF  R  K   E +   +  +    E+     G  M  N +  +
Sbjct: 256 QKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTLVTKDGEEEIFISIPGEVMVYNSMAAI 315

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +    ++   +AL+     EGR +R        F  +ID  Y  +P S++  +  +
Sbjct: 316 INALLEGISIEVIKEALASMSGVEGRMERLDLDTE--FDIIID--YAHSPDSLERLLKSV 371

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALP 419
             +    +G+   V G     G+  +     +  +   +   HV ++  +  +    ++ 
Sbjct: 372 KTM---YDGKVYLVFGC---NGDRDKEKRPIMGRIAGEF-ADHVIVTSDNPASEDPQSII 424

Query: 420 RSIHVHYSETMDGLFLFIQSS---------LVDGDVVVV--KS 451
            ++    +E  D     ++              GDV+V+  K 
Sbjct: 425 DTVAAAVAEKTDACETVLRRWDAIYYAATLPKAGDVLVLAGKG 467


>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 490

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 172/482 (35%), Gaps = 58/482 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H    +P+    +  I +DSR + P   F  I G   DGH F   AV+
Sbjct: 4   MDLRELL--THLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVE 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120
           KGA  ++    +   +  + +          A+  LA A       K  +I +TG+ GKT
Sbjct: 62  KGAVAILAEKPVDVEVPVVRV-----KSTKRAMAVLADAFYNQPTQKMHLIGVTGTNGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGI 164
           T   ++     S  K    IG+    I                +  T  +M   +V+  +
Sbjct: 117 TITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAM 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------E 218
            E+    L   R   H     +AV + +   HL     +E+   AK  +F  L       
Sbjct: 177 MEVSSHALDLGR--VHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHN 234

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     LN DD+  E     + A    T+ ++G  + +D +    +  +  +  ++    
Sbjct: 235 RPKFAVLNADDAATEEYIKNTAA----TVITYGIDRESDIRATNIQITNSGTTFDLTTPT 290

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++ V    IG     N+L       +    +   ++ + V     G   R+     +  
Sbjct: 291 ETVRVGMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSG---RFEVVDAEQD 347

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FT+I + Y   P S++  +  + + +   +     ++G     G+  ++    +A + + 
Sbjct: 348 FTVIVD-YAHTPDSLENVLKTVKEFA---KRNIYVIVGC---GGDRDRTKRPIMARIAAE 400

Query: 399 YNISHVWLSG----FHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV-- 449
           Y+   +  S        LA+   +   +                +   ++   DV+V+  
Sbjct: 401 YSTQAILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVETVHADDVIVIAG 460

Query: 450 KS 451
           K 
Sbjct: 461 KG 462


>gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas mossii DSM 22836]
          Length = 483

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 176/478 (36%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ I    I       V G+  DSR   P   F A+KG   DGH +I +A++ G
Sbjct: 1   MKLQDLLKNIDVIEIKGEQDINVTGVFTDSRKATPGSVFIALKGVQVDGHLYIKNALELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A +++   +      +  I    V D   A  K+A        +   ++ +TG+ GKTTT
Sbjct: 61  AKVIL--HENKIDTSNEGITYIKVKDSADAAGKIATHWYGDPSNNLKLVGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFE 166
             +L      +      + +  N+I             P++L  M         ++   E
Sbjct: 119 ATLLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKNMVDAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     + E   AK   F+ L  T     N
Sbjct: 179 VSSHAIHQKRI--SGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKKAFFDQLPDTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ R  ++  + + +E+   GK ++    
Sbjct: 237 IDDKNGLVMLQNTKA----KTSTYSVHSLADFKARIIEKHFDGTAIEI--NGKELQ--VQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L   G   +L    + A+  LS   P  GR +  R +  QGF  ++D  Y
Sbjct: 289 FVGVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSS--QGFTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   +  + ++   G GR I V+G     G   ++    +A      +   V L
Sbjct: 345 AHTPDALTNVLEAIHEV-LEGNGRVITVVGC---GGNRDKTKRPIMAREAVRLS-DQVIL 399

Query: 407 SGFHVLA---------LKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            + D L   +          +       +    GDV+++  K 
Sbjct: 400 TSDNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIAGKG 457


>gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 465

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 104/461 (22%), Positives = 189/461 (40%), Gaps = 26/461 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFF-AIKGPHYDGH--DFILHAVQK 63
             ++L  I G  I    +  +  +   S  +     FF   KG   D +   +      K
Sbjct: 6   LKEILAVIDGEVIAGSSEFEIIDVKTSSPGLRNGTLFFHTKKGLTIDQNFNRY------K 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               +V +  +     + ++ +  VD+ + AL       R      ++ ITG+ GKTTTK
Sbjct: 60  KRVAIVTDKKIDLDQLNDNVTLITVDNSVNALASFTSYYRGLFTIPVVGITGTAGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L   +       S N  +     L  +  D D  +FE+G+S+ G IR    + +
Sbjct: 120 EMLAHILRGEQNVQCTYKSMNGIVLNLKYLLGINEDTDVAVFEMGVSYPGNIRKSGAVFK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT I  AHL     +E    AK E+ E L+  G + LN DD   + +        
Sbjct: 180 PSIGMITNIGTAHLETCKTLERYIGAKGEMLEALDYKGQLLLNSDDENIKKIDLHPFK-- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGI 302
              +Y FG+     +++ + +  +E+   ++ ++G S + V+  G+G     N    +  
Sbjct: 238 -GQVYYFGQKSECAYRISQIEYAAEKMVFQLHVKGHSSKRVYVPGLGEQCVYNAAAAIAA 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +   D+ + I+ +  F   E   +           T+ID+++N+NP+S  AA+ VL +
Sbjct: 297 AHLTGMDLSSCIERIGSFKQME---RHVSVERGLNRATIIDDTWNSNPSSAYAALKVLQK 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----AL 418
           I+ + +   +AV G +  +G      H+ L   +    IS +   G     + D    A 
Sbjct: 354 IAENKKS--VAVFGKLQRLGAKQHEEHVKLGARMKELGISCLITIGKDAQDIGDAAIQAG 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               +V    + + L   + S   +  VV++K        +
Sbjct: 412 IAQANVFNVLSAEELQEKLLSITDENTVVLLK----MSLDK 448


>gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 487

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 169/456 (37%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G + DG   I  A+++GA  V    +    +    +
Sbjct: 15  DALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   +A
Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQGRAAALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E  A+AKA++F  L+      +N DD F   L A         +
Sbjct: 195 VLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCR-VINLDDDFGRELAAVKQES---RL 250

Query: 248 YSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++ +   +A    R  K   +     +        +    +G     N+L  +G +  L
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D  +KAL       GR +R           L+   Y   P +++  +  L    PH
Sbjct: 311 DYALDEILKALPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            +GR + + G   +     +    ++ E L+      VW++  +  +         ++  
Sbjct: 364 AKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSESPVSIFDDIRPG 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V + E        + +S    DVVV+  K 
Sbjct: 420 FVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
 gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
          Length = 491

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDPVAEEYMRSTAA----TVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +    G    ++G     G+  ++    +A V   Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---NGDVYCIVGC---GGDRDRTKRPVMASVAVEYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S        +A+ D + +    +  E          +  S     D++++  K 
Sbjct: 400 TQAIYTSDNPRSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKG 459


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 189/442 (42%), Gaps = 21/442 (4%)

Query: 26  FVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
            ++ I IDSR + +    F A+KG   DGHDF+  A + GA   +V+           I 
Sbjct: 24  IIDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWTPPFNLKPIF 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V   L AL ++A A RL+    II ITG+ GKT  K++L   LS+ K   A  GS+N
Sbjct: 84  LLKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVCASPGSFN 143

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGV L+L  +  D +  I E  +S   E+  L  L+RP   ++T I   HL+  + I+
Sbjct: 144 SQIGVALSLLTIQKDQELAIIEAAISKKQEMDILADLIRPDYTILTPIGKKHLATLNDID 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW- 263
            I     ++     KTG + L  D   ++    K++        S+   +++        
Sbjct: 204 TITYETLKLVWATSKTGWVLLPND--IYQQFHLKNNLFS-----SYIWDRDSKCLPHAIP 256

Query: 264 --KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTADVDTAIKALSVF 320
             K     S  ++     S        GY    N++ +T     +     +   K    +
Sbjct: 257 FSKNSPFASHYQLTFPDSSRYEQQMTNGYSYFLNLINITSKAAWLSGIKAENIKKIFEYY 316

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +P+  R + ++  +     T I+E+  ++P S+  A       +P    R+I + G M  
Sbjct: 317 YPEPSRTEIWKSPI---GATFINETSCSDPHSIDRAFKHFEHAAPSQ--RKIFIFGGMKG 371

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFH-VLALKDALPR---SIHVHYSETMDGLFLF 436
               +Q+++  + + +S  ++ H+ L G      L D + +      +   +  +    +
Sbjct: 372 NISFAQNYYTKIGKTISKAHLRHLLLFGHQPFKTLIDEVKKISPETEILCFKRCEEALNY 431

Query: 437 IQSSLVDGDVVVVKSSNSCGFY 458
           +Q +L   D++++K      F 
Sbjct: 432 LQKNLQSQDLILIKGDRKIPFE 453


>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 496

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 173/475 (36%), Gaps = 64/475 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I    +    GI+IDSR + P + F  + G   DGHD+   A ++GA  +VV       +
Sbjct: 15  IRGDGETSCTGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGAAALVVERW----L 70

Query: 79  GSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             +++P   V D   A+  L         S+  +I +TG+ GKTTT  ++   L    + 
Sbjct: 71  DDVALPQLKVKDSRQAMAVLGGVFFGAPSSRLKVIGVTGTNGKTTTTYLIERILQDQGRE 130

Query: 137 YACIGSYNNHIGVP-----------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTH 180
              IG+                   L L +   D+     ++ + E+    L + R    
Sbjct: 131 TGLIGTIQRRFAGQTYPMSGTTPESLELQQYLHDMAEGGGEYCVMEVSSHALAQGR--VK 188

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFF 232
             R   AV T +   HL     ++E   AK   F  L        E+     LN DD   
Sbjct: 189 GTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYAENPEERSYAVLNVDDPAS 248

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                ++ A     + ++G  ++AD +       +  +   V     S ++    +G   
Sbjct: 249 AYFAKQTAA----EVITYGVEQDADVRASNISITARGTSFHVDTFRGSADISLRMVGKFN 304

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +    +    ++      +     +G   R         F +I + Y   P  
Sbjct: 305 VYNALAAISATLLEGIPLEQIK---ASLESVKGVEGRVEAVDEGQDFAVIVD-YAHTPDG 360

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++  +  +++ +   +GR I V G     G+  +     + ++ + Y   +V ++  +  
Sbjct: 361 LENVLRTVNEFA---KGRVICVFGC---GGDRDRKKRPIMGQIAAKY-ADYVLVTSDNPR 413

Query: 413 A--------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          ++D + ++ +    +  + +   I+ +  + DVV++  K 
Sbjct: 414 TEDPQAILRDIEQGLVEDGVDQARYELIVDRREAIGKAIEMASRE-DVVLIAGKG 467


>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 487

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 176/478 (36%), Gaps = 53/478 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ IQ      + +  V  ++ DSR + P   F AIKG   DGHD+   A  +G
Sbjct: 1   MNLAELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V        +  ++IPV  V     A+ +L          K  +I ITG+ GKTTT
Sbjct: 61  AVAIVSER-----LLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++   L+ + +    IG+    IG  +  +R                    V+  I E
Sbjct: 116 TTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEGVEDVIME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R         +A  T +   HL      E  A AK  +F    + L     
Sbjct: 176 VSSHGLELGRVT--GTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKV 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD    L +  + A     + ++G  + AD Q +   Q  +++   +  Q +++E
Sbjct: 234 AVLNADDEISHLFEMMTGA----RVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAVE 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG     N+L+  GI+  +   +     A++   P +GR +R            I
Sbjct: 290 LTVQFIGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPIDGYN-----I 344

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P  ++  +  L  +        I ++G     G    +    + ++ S Y  +
Sbjct: 345 YVDYAHTPDGIEQCLKALVDVPKEN---IIFLIGT---GGNRDVTKRPMMGQLASTYAGT 398

Query: 403 HVWLSGFHVLALKDALPRSI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            V  +        +++   I     H  + E    +    +  S     ++V++  K 
Sbjct: 399 VVITTDDPRFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKG 456


>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 485

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 172/479 (35%), Gaps = 52/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+++    +       + GI++DSR + P + F A+KG   DGH +I  AV+K
Sbjct: 2   MMELDILLKSVSVVRVTGDTVRNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA  VV   +    + +  +    V D   A+ +LA        SK  +I +TG+ GKTT
Sbjct: 62  GAVAVVC--EAWPEVQAEGVTYVQVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
              +L               +  N+I             P+TL R+          +   
Sbjct: 120 IATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R     ++    + T +   HL      E    AK   F+GL K      
Sbjct: 180 EVSSHAVAQHRI--AGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVT 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A+    + ++     ADF+ +  ++  E   ++V  +    EV  
Sbjct: 238 NVDDRNGMIMVQNTKAV----VKTYSLRAAADFKAKVLEESFEGMCLDVNGK----EVSV 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG     N+L        +    +  + ALS   P  G   R+    ++   T I + 
Sbjct: 290 PFIGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNG---RFETIRSKEGVTAIVD- 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   +S +++I     G  I V G     G   +     +A+     N   V 
Sbjct: 346 YAHTPDALVNVLSTVNEI-LKRRGEVITVCGA---GGNRDKGKRPIMAQEAVK-NSDRVI 400

Query: 406 LSGFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         + D L          V                   GDVV+V  K 
Sbjct: 401 ITSDNPRFEEPQEIINDMLAGLDKEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKG 459


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 188/468 (40%), Gaps = 21/468 (4%)

Query: 4   LWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHA 60
           ++T  ++   I+   S     +  ++ +  DSR IA ++   FFA  G   DGH +I  A
Sbjct: 1   MYTISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGIFFAFTG-RQDGHLYIQDA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG    ++  D    +      +  V +    L  LA   R R +  +I ITGS GKT
Sbjct: 60  YNKGVRNFILEKDTEQEVQMPDANILWVANSWTTLQSLAQHNRSRFQGPVIGITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   +S   K Y    SYN+ +GV L+L  +    +  I E G+SH+GE+  L  
Sbjct: 120 IVKEWLFQLMSPEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   V+T I  AH   F+   E    K  +F+  E   T+                 
Sbjct: 180 MIKPTFGVLTNIGIAHQQGFASKLEKTEEKLRLFKDAE---TLIYPA------KYLEAVQ 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   S+G+ ++   ++   ++  +  +++ +   GK+  +          +N +  
Sbjct: 231 IPYKPRKLSWGEEEDNQLEVYSIRKPEDGQTYVTLYYGGKTFGISVPFTDSAAMENAITC 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++     D     + +    P E    R      +   ++ID+SY+ +  S++ A+  
Sbjct: 291 VAVMLRFGYDTALIAERIRNLLPVE---MRLELKNGKNNTSVIDDSYSNDLVSLQIALDF 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q   H     I +L D+  +    +     L  +++  N++ + L G  +    + L 
Sbjct: 348 LNQQHQHTNS--ILILSDIPGVTLTDEKNLNKLKRLVADRNLTQLILIGPVLRQYAEQL- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      +       ++        +++K +    F  +  LL+ +
Sbjct: 405 -GVPFQCYASTADFIANLKDIEFRDATILLKGARDFHFEDISKLLVAK 451


>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
 gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
          Length = 483

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 170/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +++L+ I    I       + G++IDSR I     F AI+G   DGH FI  A++ G
Sbjct: 1   MKLNEVLKNITPIKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V+     +    S  +    V+    A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  ADAVLCEE--LPEKLSDHVTYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+ L  +         ++   E
Sbjct: 119 ATLLYNMFRKFGYKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     ++    + T +   HL      E   +AK   F+GL K      N
Sbjct: 179 CSSHAIHQKRI--GGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++     ADF+ R  +   E  ++E+       EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSIRSMADFRARILECHFEGMYLEID----GREVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  +  LS  H   GR +       +GF  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAIMLGKKPEDILLVLSTLHSVSGRLEPIHSP--EGFTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+G  I V G      +  +     +A+     +   V +
Sbjct: 345 AHTPDALANVLNAIHEV-LDGKGHVITVCGAGGNRDKGKRPL---MAQEAVRQS-DKVII 399

Query: 407 SGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + + L      +   V                   GDVV+V  K 
Sbjct: 400 TSDNPRFEDPQEIINEMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457


>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Laribacter hongkongensis HLHK9]
 gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
          Length = 491

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 163/449 (36%), Gaps = 38/449 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVF 86
           + ++ DSR + P + F A +G + DG ++I  A+ +GA  V     D        ++P  
Sbjct: 24  DRVTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNL 83

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+          +  R     T+I +TG+ GKT+    L  A + + +  A IG+  
Sbjct: 84  PVPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTVG 143

Query: 145 -----------NHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +    P+T+ R   D       +  + +S  G  +F  + V    AV T
Sbjct: 144 NGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +    + K  +F          +N DD F   L ++  A     + ++
Sbjct: 204 NLTRDHLDYHGSMAAYGATKERLFHWQGLQ-HAVINVDDQFGRELASRCTA---GQVITY 259

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  ++ D +        E   ME+        +    +G   A N+L  L ++ +    +
Sbjct: 260 GL-EHGDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLAVLCVNGVPL 318

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A + L    P  GR +R           L+   Y   P +++ A+S L+ I P   GR
Sbjct: 319 TQACRVLGQIQPARGRMQRV----GGTREPLVVIDYAHTPDALEKALSTLADIKPA-GGR 373

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH--V 424
             AV G   +     +    D+AE  +      V  S          + D +   +    
Sbjct: 374 LFAVFGCGGDRDRGKRPLMGDIAERFADV---TVVTSDNPRTESPQVIIDDILAGMRQPT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +  +    GDVV+V  K 
Sbjct: 431 QVEPDRRAAIHWAVAQARVGDVVLVAGKG 459


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 185/450 (41%), Gaps = 23/450 (5%)

Query: 30  ISIDSRSIA-PQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSL 81
           I  DSR ++ P    FFAIKG  +DGH F+      G    VV            +    
Sbjct: 18  ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWD 77

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              ++ V   + AL +L  + R +    ++ I GS GKT  KE L   LS  +   A   
Sbjct: 78  DAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVASPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           SYN+ IGVPL++  +  +    IFE G+S   E+ +L  +++P I + T I PAH   F 
Sbjct: 138 SYNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYLQPVMQPTIGIFTNIGPAHDDGFR 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             ++  + K  +F  ++K   +    D    D    L+    +A  ++T+        + 
Sbjct: 198 SRKQKITEKLRLFTKVKK---LIYRKDYHEIDEEISLILKPVNAF-LETLSWGSNYSGSH 253

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            Q+  +    +++ + +  +  +             +N+   +  +     +     + +
Sbjct: 254 VQVT-FNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDFGLEPAVIQERV 312

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            +  P      R           +ID++YN +   +  A++ L+Q       R+  +L D
Sbjct: 313 LLLKPVS---MRLELKEGINHSYIIDDAYNNDLQGLAMALNFLAQ--QEQRNRKTVILSD 367

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           + + G+     +  ++ +LS  +I  +   G  + +       +    Y +T   L  F 
Sbjct: 368 VLQTGQTPTELYKMVSRLLSEKSIDRLIGIGKQISSQASLFDIAEQEFYDDTDSFLKTFA 427

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +L D  +V+VK +    F ++++ + ++
Sbjct: 428 FPTLAD-TLVLVKGARPFSFEKIVHRIQQK 456


>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
 gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
          Length = 490

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 173/482 (35%), Gaps = 53/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+  ++   +       ++GI  DSR +     F A++G   DGHD+I  A+ KG
Sbjct: 1   MELKELIHPLEVLEVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKG 60

Query: 65  AGLVVVNTDMVASIGSLSI----PV-FGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117
           A  +V       S   + +    PV   V D   AL K   A          ++ +TG+ 
Sbjct: 61  AAAIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVD 161
           GKTT   +L      +      + +  N+I             P+TL  +         +
Sbjct: 121 GKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAGCE 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +   E+    + + R     +  +  + T +   HL     +E    AK + F+ L  + 
Sbjct: 181 YAFMEVSSHSIDQKRI--SGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPTSA 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N DD    ++   + A       ++     ADF+ +  +   E + M V       
Sbjct: 239 FALTNADDKAGLVMLQNTAARK----LTYSLRTLADFKGKILESHFEGTEMLVN----GR 290

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV+   +G   A N+L   G    L  D +  +  LS  H   GR +  +    +G+  +
Sbjct: 291 EVMTRFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSP--KGYTAI 348

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P ++   ++ + ++  +G GR I V+G     G   +     +A+  +  + 
Sbjct: 349 VD--YAHTPDALTNVLNSIHEV-LNGNGRVITVVGC---GGNRDKGKRPIMAKEAAKLSD 402

Query: 402 SHVWLS--------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             +  S           +  +   L  +   H                    GDV++V  
Sbjct: 403 QLILTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAG 462

Query: 450 KS 451
           K 
Sbjct: 463 KG 464


>gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
 gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
          Length = 469

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 197/459 (42%), Gaps = 30/459 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFF-----AIKGPHYDGHDFIL 58
           +T +++L+   G          +   I+   + I      F      I+G ++       
Sbjct: 4   FTLNEILKQTGGDLCYGSGNPVIKHAINYAKKDIEDHTLIFHLDREPIRGKYW------- 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              +  + +V+ +   + +    +I +     +  A  K     R      +I +TG+ G
Sbjct: 57  --KENHSIVVITDHPELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTCG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   L    K  A   S N+       L  +    +  +FE+ +++ G ++  
Sbjct: 115 KTTTKEMIRQILIEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEMPVAYPGYLKVA 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKA 237
               +P I ++  I   HL++    EE   AKAEI EGL+   G + LN DD   + +  
Sbjct: 175 CRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADDENIKRVLD 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            SH   ++ +   GK+ ++ FQ +  K  ++     ++ Q    +    G G H   N L
Sbjct: 235 VSH---LQNVVYIGKNDSSQFQAKDIKYANKGMAFTLKYQNTEYDAFIPGYGEHNVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  V  +  D+  AI+ LS+F   E   +  R        T+I++++N++P SM  A+
Sbjct: 292 AAIAAVFYVGIDISVAIQRLSLFEQVEEHLEFKR---GMNECTVINDTWNSSPLSMATAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            VLS +S   +   IA+LG M ++GE   +   + D+ +  +   I  + + G    A+ 
Sbjct: 349 GVLSDMSKEKQS--IALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGEEAKAIG 406

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               +       V++ +T D ++  +   L +  ++++K
Sbjct: 407 TGALKCGMDPNKVYFCKTGDEVYNVLAPYLNENTIILLK 445


>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
 gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
          Length = 489

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 170/483 (35%), Gaps = 58/483 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL  I    +       +  + +DSR ++    FF I+G   DGHD+   A  +
Sbjct: 1   MMKIRELLDHISPCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA   +   ++             V D   A+ +LA         + T+I +TG+ GKT+
Sbjct: 61  GAVAFLTEEELPVDG-----TQLIVRDSRRAMAQLAARFYNYPSDRMTMIGVTGTNGKTS 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGI-F 165
               +   L         IG+    +    T               L  M +     +  
Sbjct: 116 VTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEMYLAGAEAVTM 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---- 221
           E+    L   R   H     +AV T ++  HL     +++ A AK+ +F  L   G    
Sbjct: 176 EVSSHALHLGR--VHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDA 233

Query: 222 --TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DDS+ +++   S       + ++G  K  D +    +   E     ++L  +
Sbjct: 234 YKRAVINVDDSYADIMLGASAV----PVITYGIEKPCDVRAEDLEVSPEGIRFTIRLNQQ 289

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  V     G     N L     V  +  + + A + LS      GR +R     +  F 
Sbjct: 290 SYPVQLKLAGTFSVYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERVET--DAPFH 347

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P  ++  I    + +         V G   +     +     LAE L+  
Sbjct: 348 VIVD--YAHTPDGLENVIRTAKETTDRP---VTVVFGCGGDRDRKKRPLMGKLAEDLA-- 400

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
              HV L+  +  +         +   + +  H   ++    +   I ++  +G+V+V+ 
Sbjct: 401 --DHVILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNA-TEGEVIVIA 457

Query: 450 -KS 451
            K 
Sbjct: 458 GKG 460


>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
 gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
          Length = 491

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 162/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +        +V+  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALSLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAA----TVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    IG     N+L  +    +    + T I  ++      G   R+        +T
Sbjct: 290 VNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPG---RFEVVDGGQDYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  ++   Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLTTAKQFA---KGNVYCIVGC---GGDRDRTKRPIMAGVATEYA 399

Query: 401 ISHVWLSG----FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S         A+ D   A  +  +            +  S     D++++  K 
Sbjct: 400 THAILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKG 459


>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 487

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 169/480 (35%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +            +  I +DSR + P   F  I G   DGH F   AV+KG
Sbjct: 1   MDLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +   +  + +          A+  LA A       K  +I +TG+ GKTT 
Sbjct: 61  AVAILAEKPVDVEVPVVRV-----KSTKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++     S  K    IG+    I                +  T  +M   +V+  + E
Sbjct: 116 THLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV + +   HL     +E+   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G  +++D +    +  +  +  ++    ++
Sbjct: 234 KFAVLNADDAATEEYIKNTAA----TVITYGIDRDSDIRATNIQITNSGTTFDLTTPTET 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    +   ++ + V     G   R+     +  FT
Sbjct: 290 VRVEMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSG---RFEVVDAEQDFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +  + + +   +     ++G     G+  ++    +A + + Y+
Sbjct: 347 VIVD-YAHTPDSLENVLKTVKEFA---KRNIYVIVGC---GGDRDRTKRPIMARIAAEYS 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S        LA+   +   +                +   +    DVVV+  K 
Sbjct: 400 TQAILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVEAAHADDVVVIAGKG 459


>gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
 gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
          Length = 489

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 176/455 (38%), Gaps = 42/455 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP   +  +  DSR   P   FF +KG   DGH+ I  A+  GA ++V +  +       
Sbjct: 10  VPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGAIVIVHSEPIEKINPD- 68

Query: 82  SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--Y 137
            I    V DV+   N++  +         T+  +TG+ GK++   ++   L+ I+ T   
Sbjct: 69  -ITYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRNILNQIEPTAYV 127

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRP 184
             I    N++ +P  +A   +D   GI              E     + + R     +  
Sbjct: 128 GTISIEYNNVKLPPLVASPNIDEVHGILRDMVDAGIKNCAYEASSIAIDQGRL--DAIDF 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+ T +   HL     +    +AK ++F+ L++     +N DD     +   + A   
Sbjct: 186 DVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQLKEEAIAIVNVDDPSGMKIVQDTQA--- 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++++G    AD+++  +    + +   + +      +  + I      N++  +  + 
Sbjct: 243 -KVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDHDYRLETNLIARFNIYNLVAAIAAIH 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +D     +   +  EGR +R +   +   F LI + +      ++      S I+
Sbjct: 302 QKGVSMDDIASYIQHLNQVEGRMERIQ---DGQPFNLIVD-FAHTADGIEKVCQYASSIT 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALP 419
           P    R IA+ G     G+   +      E+L  Y    + L+     G  V  + + + 
Sbjct: 358 PKDC-RIIAITGS---AGKRDTAKRPIFGEILDHY-CDMIILTEDDSRGESVREIAEDIA 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKS 451
           + IH      ++  +  I+ S+    +GD ++V  
Sbjct: 413 KGIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLG 447


>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
          Length = 485

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 173/479 (36%), Gaps = 52/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+++    +       + GI++DSR + P + F A+KG   DGH +I  A++K
Sbjct: 2   MMELDILLKSVSVVRVEGDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA  VV   +    + +  +    V D   A+ +L+        SK  ++ +TG+ GKTT
Sbjct: 62  GAVAVVC--EAWPEVQAEGVTYVQVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
              +L               +  N+I             P+TL R+          +   
Sbjct: 120 IATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R     ++    + T +   HL      E    AK   F+GL K      
Sbjct: 180 EVSSHAVAQHRI--AGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVT 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A+    + ++     ADF+ +  ++  E   ++V  +    EV  
Sbjct: 238 NVDDRNGMIMVQNTKAV----VNTYSLRAVADFKAKVLEESFEGMCLDVNGK----EVSV 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG     N+L        +    +  + ALS   P  G   R+    ++   T I + 
Sbjct: 290 PFIGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNG---RFETIRSREGVTAIVD- 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   +S +++I     G  I V G     G   +     +A+     N   V 
Sbjct: 346 YAHTPDALVNVLSTVNEI-LKRRGEVITVCGA---GGNRDKGKRPIMAQEAVK-NSDRVI 400

Query: 406 LSGFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         + D L      +   V                   GDVV+V  K 
Sbjct: 401 ITSDNPRFEEPQEIINDMLAGLDKEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKG 459


>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
 gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
          Length = 496

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 165/484 (34%), Gaps = 59/484 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++ +    +       +  ++ DSR++     F A+ G   DGHD++  AV+ GA 
Sbjct: 6   LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            V+V+  +  S     + V  V+D   A+            +   +I +TG+ GKTTT  
Sbjct: 66  AVLVSKPVEISSD---VCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNGKTTTTH 122

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFELG 168
           M+   L +       IG+ +  I                +   L +M  + V   + E+ 
Sbjct: 123 MIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TGT 222
              L   R     V    AV T +   HL      E   +AK ++FE + K         
Sbjct: 183 SHALALGR--VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKG 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD++   +  K+ A     I ++    +            + S   V   G    
Sbjct: 241 AVINIDDAYGHRVVEKTTA----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYT 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G     N L  +G   +    ++   KAL  F    G   R+        F ++
Sbjct: 297 VAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPG---RFELIEEGQPFAVV 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y   
Sbjct: 354 VD-YAHTPDGLENILQTAKAIQEN---RIIVVFGC---GGDRDATKRPIMGRIAAQYG-D 405

Query: 403 HVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+++  +                +KD L    H                    GD+V++
Sbjct: 406 VVYVTSDNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLI 465

Query: 450 --KS 451
             K 
Sbjct: 466 AGKG 469


>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
 gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
          Length = 495

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 157/485 (32%), Gaps = 57/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    +         GI  DSR +   + F  + G   DGHD+   A+  G
Sbjct: 1   MQLQQLASLLAVSRVVGDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +VV  ++      + +P   V D   A+  LA         +  +I ITG+ GKTT 
Sbjct: 61  AAALVVEREL-----DVPVPQLVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVD-VDFGIFE 166
             ++   +         IG+                   + +   L  M    V   + E
Sbjct: 116 TYLIEKIMKDAGVNTGLIGTIQMRYGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R          A+ T +   HL   + +EE  +AK  +F  L         
Sbjct: 176 VSSHALEQGR--VKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDAS 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +    LN DD     L+A++ A     + ++G  K +D Q       S+ +   V    
Sbjct: 234 DSKYAVLNADDPASSYLQAQTAA----QVITYGVEKESDVQASSITIGSKGTSFHVSTFK 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++    +G     N L  +    +    +    ++L      +G   R         
Sbjct: 290 GDTDIELRMVGKFNVYNALAAITAALLEGISLVDIKRSLESIAGVDG---RVEPVDAGQP 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F +I + Y   P  ++  +  + + +    G+   V G   +     +     +A   S 
Sbjct: 347 FAVIVD-YAHTPDGLENVLRTVKEFAV---GKVWCVFGCGGDRDRTKRPLMGKIAARYSD 402

Query: 399 YNI----------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++             V L       + + +P   +    +    +   +       DVV+
Sbjct: 403 HSFITSDNPRTEDPKVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAV-EMASPDDVVL 461

Query: 449 V--KS 451
           +  K 
Sbjct: 462 IAGKG 466


>gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
 gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
          Length = 497

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 163/444 (36%), Gaps = 30/444 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88
           +  DSR + P + F A +G + DG  FI  A+  GA  V+    D      + ++P   V
Sbjct: 26  VETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPADGFNWNPAWNVPNLAV 85

Query: 89  DDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             +                   T+I ITG+ GKT+    L  A S +    A IG+  N 
Sbjct: 86  PQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIGTVGNG 145

Query: 147 IGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTI 192
               LT           + +              + +S  G  +F  + V    AV T +
Sbjct: 146 FYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATAVFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +EE  ++KA +F   E      +N DD+F   L A       +T+ ++G 
Sbjct: 206 TRDHLDYHGSMEEYGASKARLF-HWEGLRHAIINADDAFGRELAAGIDRQRTQTV-TYGL 263

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +  D + +      +   M V      +E+    +G   A N+L  L  + +    +  
Sbjct: 264 -EQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATLCVNGVALKD 322

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A   LS   P  GR +R       G   L+   Y   P +++ A++ L++I P G  R  
Sbjct: 323 AAAVLSRIQPARGRMQRL----GGGHEPLVVIDYAHTPDALEKALATLAEIRPAGN-RLY 377

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVHYSE-T 429
            V G   +  +  +     +A  ++   +  S    S      + D         + E  
Sbjct: 378 CVFGCGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMGETGHVEAD 437

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                 +  ++   GD+V+V  K 
Sbjct: 438 RAAAIRWAIAAARAGDIVLVAGKG 461


>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 496

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 160/485 (32%), Gaps = 59/485 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +L+  + G  +       +  ++ DSR   P   F  + G   DGHD+I  A   GA
Sbjct: 4   NLQELVALMPGCEVRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTK 123
             V+V  ++    G     V  V D   A+  +          K  +I +TG+ GKTTT 
Sbjct: 64  VAVLVEKEVSVEPGMT---VIKVSDTRAAMQAITPFFFDYPSQKLRVIGVTGTNGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFEL 167
            ++   L         IG+ +  I                +   LA M    +D+ + E+
Sbjct: 121 HLIRSILMQAGYKVGLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF------EGLEKTG 221
               L   R  T      I V T I   HL      E    AKAE+F      + ++   
Sbjct: 181 SSHALALNR--TAGCEFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGK 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +  +N DD     +  +          ++G    AD   R     ++ +  E       +
Sbjct: 239 SAVINTDDPAAAHMLREV----TYRAITYGVQDGADLTARNINIQADGAKFEAVTTRGII 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G     N+L  +G+      + D    AL  F    G   R+        FT+
Sbjct: 295 PLALQITGLFNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPG---RFEIVDAGQPFTV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y   P  ++  +    Q +   + R IAV G     G+  ++    +  + + Y  
Sbjct: 352 IVD-YAHTPDGLENILKTARQFA---QRRIIAVFGC---GGDRDRTKRPIMGRLAAEY-A 403

Query: 402 SHVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             V  +  +                +++ L                    S     D+V+
Sbjct: 404 DVVVATSDNPRTEDPVSILKEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVI 463

Query: 449 V--KS 451
           +  K 
Sbjct: 464 IAGKG 468


>gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
 gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
          Length = 469

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/459 (22%), Positives = 194/459 (42%), Gaps = 30/459 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFF-----AIKGPHYDGHDFIL 58
           +T +++L+   G          +   I+   + I      F      I+G ++       
Sbjct: 4   FTLNEILKQTGGDLCYGSGNPVIKHAINYAKKDIEDHTLIFHLDREPIRGKYW------- 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              +  + +V+ +   + +    +I +     +  A  K     R      +I +TG+ G
Sbjct: 57  --KENHSIVVITDHPELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTCG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   L    K  A   S N+       L  +    +  +FE+ +++ G ++  
Sbjct: 115 KTTTKEMIRQILIEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEMPVAYPGYLKVA 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKA 237
               +P I ++  I   HL++    EE   AKAEI EGL+   G + LN DD   + +  
Sbjct: 175 CRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADDENIKRVLD 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            SH  G   +   GK  ++ FQ +  K         ++ Q K  +    G G H   N L
Sbjct: 235 VSHLQG---VVYIGKGDDSQFQAKDIKYAKGGMAFTLKYQNKEYDAFIPGYGEHNVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  V  +  D+  AI+ LS+F   E   +  R        T+I++++N++P SM  A+
Sbjct: 292 AAIAAVFYVGVDISVAIQRLSLFEQVEEHLEFKR---GLNECTVINDTWNSSPLSMATAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            VLS +S   +   IA+LG M ++GE   +   + D+ +  +   I  + + G    A+ 
Sbjct: 349 GVLSDMSKEKQS--IALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGDEAKAIG 406

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               +       V++ +T D ++  +   L +  ++++K
Sbjct: 407 TGALKCGMDPNKVYFCKTGDEVYNVLAPYLNENTIILLK 445


>gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 487

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-PNLNCRVINLDDDFGRELAGLKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +    A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSEAPTNIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKG 455


>gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855]
 gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter
           ruber DSM 13855]
          Length = 543

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 165/396 (41%), Gaps = 23/396 (5%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   GA L V     +      +I           L         RS  +++ ITGS GK
Sbjct: 153 AADLGAPLWVALGAALMHPVETAIQRGFKRQARRRLQ-------TRSDLSVVGITGSYGK 205

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFL 178
           T+TK ++   L      YA   SYN  +G+ L +   +  +    + E G+ + G++  L
Sbjct: 206 TSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVLVLEYGIRYPGDMDEL 265

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P  +V+TTI  AHL      + IA+ K  + E     G   LN DD     +  +
Sbjct: 266 CDIAEPDASVVTTIGVAHLETMGSQDRIAAEKGVLVERTAPDGPAVLNADDERVAAMAER 325

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
           + A  +  I + G   +AD      +  +  +  +V     +        +G H   N+L
Sbjct: 326 A-AGPVWRISTEG-HPDADITADDIRYDTGGTAFDVTDDTGTTVTFETQLLGRHNVLNVL 383

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + +   +   +     A+    P E R +      ++G  T+ID+++N+NP   + A+
Sbjct: 384 LAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQL----RSRGDVTIIDDAFNSNPVGARNAV 439

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
            +LS++     G+R+ V   M E+G+   + + D   VL+ +++  V L G    A    
Sbjct: 440 EILSEMD---GGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLDLVVLVGEEQTAPIQA 496

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            L +    +  +   +++      ++  L  GDVV+
Sbjct: 497 GLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532


>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
 gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
          Length = 491

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D H+F   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L  L      +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAA----TVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +    G    ++G     G+  ++    +A V   Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---NGDVYCIVGC---GGDRDRTKRPVMASVAVEYA 399

Query: 401 ISHVWLSG----FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S        +A+ D +    +  +            +  S     D++++  K 
Sbjct: 400 TQAIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKG 459


>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
 gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
          Length = 491

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 159/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D H+F   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAA----TVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +    G    ++G     G+  ++    +A V   Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---NGDVYCIVGC---GGDRDRTKRPVMASVAVEYA 399

Query: 401 ISHVWLSG----FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S        +A+ D +    +  +            +  S     D++++  K 
Sbjct: 400 TQAIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKG 459


>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
 gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
          Length = 485

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 174/479 (36%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL  ++  SI       + G++IDSR I     F AIKG   DGH FI  A++ G
Sbjct: 1   MKLTDLLSEVKTLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFINKAIESG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +++  + V S     I    V+     + K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKAILL--EDVPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L     +       + +  N+I             P+ L ++         ++   E
Sbjct: 119 ATLLYNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     +     + T +   HL      E   +AK   F+ L K      N
Sbjct: 179 CSSHAIHQHRI--GGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSLPKKAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++     A     I ++   + ADF+ R  +   E  ++++   GK  EV   
Sbjct: 237 ADDKNGMIMVQNCKA----NIKTYSIQRMADFRARIIECHFEGMYLDI--DGK--EVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    D  +  LS      GR +  R    +GF  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIRSP--EGFTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   +S +  +     G+ I V G     G   +     +A+    ++   V L
Sbjct: 345 AHTPDALSNVLSAIHDVMEGKTGQIITVCGA---GGNRDKGKRPLMAQEAVKHS-DVVIL 400

Query: 407 SGF------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +               ++A  D    +  +   +  + +          GDV++V  K 
Sbjct: 401 TSDNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTA-AKLAKKGDVILVAGKG 458


>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 492

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 170/416 (40%), Gaps = 35/416 (8%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       ++ I+ +S+ +     FFA+ G   DGH FI  A++KGA  VV  T      
Sbjct: 13  VKGDINKNIDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGHFMPS 72

Query: 79  GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +   GV+D   AL+ ++         +  II ITG+ GKTTT  ++   L    K 
Sbjct: 73  EYADVTWIGVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKK 132

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
              IG+    I     +A                 +   V++ I E+    L   R    
Sbjct: 133 TGVIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKR--VD 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKS 239
             +  IAV T ++  HL     +E+  +AK  +F E L+  G   +N+DD +   L  + 
Sbjct: 191 YTKFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRLAEQ- 249

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLM 298
             L  K I    ++  AD  ++ ++   +++ + + + + K + V  H +G     N++ 
Sbjct: 250 --LNTKKITYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTHLLGIPNIYNVIS 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D    A+S  H  +GR +R     ++G   L+   Y  +P +++  + 
Sbjct: 308 AVSVAVALNIPFDIIESAISDAHSPDGRFERV----DEGQDFLVFVDYAHSPDALERLLI 363

Query: 359 VLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + ++       G+ + V G     G   +     + ++ +  +  +V L+  +  
Sbjct: 364 SVRKLKEEISKNGKIVTVFGC---GGNRDRGKRPQMGKIATELS-DYVILTSDNPR 415


>gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 482

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/486 (20%), Positives = 169/486 (34%), Gaps = 68/486 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T  +L    +       P   V G++ DSR + P   + A++G   DGH FI  A
Sbjct: 1   MTPVTTVAELFALYRA----PGPPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           VQ+GA  +V             +P   V D   AL++LA        ++  +I +TG+ G
Sbjct: 57  VQRGAVAIV-----GEEPLEPGVPYLRVPDARRALSRLAAAFYGFPSTRLFVIGVTGTDG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------------ 160
           KTTT  ++   L+   +    I +     G    L                         
Sbjct: 112 KTTTSCLVHHLLTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGL 171

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E     L + R     V   +AV T ++P HL     +E    AKA +   + + 
Sbjct: 172 THAVLETSSHALAQHRVAD--VAYDLAVWTNLSPEHLDFHGSLEAYFQAKAAL---VNRA 226

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   LN    +   L  + H        ++G    A ++  + ++ ++     ++  G +
Sbjct: 227 GFSILNAGCPYAMRLTHRPHT-------TYGVQAGA-YRAVRVRESTDGLRFTLEAPGFT 278

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E     IG +  +N L  L         ++ A+ AL+ F    GR +  +    +    
Sbjct: 279 GEAFLPMIGRYNVENALAALAAAHRAGVPLEEALPALARFSGVPGRMQILQAHPIRAVV- 337

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                +   P ++  A++ L    P   GR I V+G     GE   +    L        
Sbjct: 338 ----DFAHTPKALAKALTALR---PTTPGRLIVVIGA---AGERDPAKRAPLGRTAVTLA 387

Query: 401 ISHVWLS----GFHVLALKDALPRSIH-------VHYS--ETMDGLFLFIQSSLVDGDVV 447
              V+         V A+   + R           HY+          +  S    GD V
Sbjct: 388 DFAVFTEEDARSEDVHAILQEMERGAREAGGVRGTHYALKPDRRDAIRYALSLARPGDTV 447

Query: 448 VV--KS 451
           V   K 
Sbjct: 448 VFAGKG 453


>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
 gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
          Length = 491

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 161/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D + +    +  E             +++   D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 459


>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 492

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 177/476 (37%), Gaps = 53/476 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL AI   +I       V GI+ DSR + P   F AIKG   DGH FI +A + GA 
Sbjct: 8   LKELLSAIDVIAISGPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGAT 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            VVV  ++        + V  V D   AL  L          K T++ +TG+ GKTTT  
Sbjct: 68  AVVVEREVEVPAD---LTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKTTTTH 124

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPV-----DVDFGIFELG 168
           ++      +      +G+ +N I              L L ++       DV     E+ 
Sbjct: 125 LIAAIWRQVGLKPGVVGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVAMEVS 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     V+  +AV T I   HL     +E+  +AKA++FE  +      +N D
Sbjct: 185 SHALALNR--VAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFE--KDIKYAVINAD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E L   S       +Y++G   NAD + +  +  +      V        +     
Sbjct: 241 DQAAEQLFKISRG----KVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKLT 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L    +  +L  +    +   +      G   R+        F ++ + Y  
Sbjct: 297 GRFNVYNSLAAYTVGMVLGYN---GMDVKAALEGVTGVAGRFELVDQGQDFAVVVD-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P  ++  ++   QI+   +GR I V G     G+  ++    + E+ + Y+   V  S 
Sbjct: 353 TPDGLENILTTARQIT---KGRLITVFGC---GGDRDRTKRPIMGEIAARYSDLPVVTSD 406

Query: 409 -----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        +L          ++  ++  + +   I +    GDVVV+  K 
Sbjct: 407 NPRTEDPQKIIEDILVGLQGKDPGSYLVIADRREAINRAI-NLAEPGDVVVIAGKG 461


>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
 gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
          Length = 488

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/478 (20%), Positives = 177/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++LQAI    +       ++GI +DSR I   + F A+KG   DGH +I  A++KG
Sbjct: 1   MKLGNILQAITTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV   + +    S ++    V+D   A+ +L         SK  +I +TG+ GKTT 
Sbjct: 61  ATAVVC--ETLPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL ++          +   E
Sbjct: 119 ATLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL      E    AK   F+GL KT     N
Sbjct: 179 VSSHAVAQKRI--GGLKFAGGIFTNLTRDHLDYHKTFENYLKAKKAFFDGLLKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     + ++     ADF+ +  +   E   +++     + EV   
Sbjct: 237 ADDRNGLVMTQNTKA----KVATYSLRSLADFKGKVLEDGFEGMLLDIN----NREVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L       +L    +  +  LS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLRST--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++  +G G+ I V+G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALTNVLNTIHEV-LNGRGKVITVVGA---GGNRDKGKRPIMAQEAVRLS-DRVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L          V                   GDV++V  K 
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKG 457


>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
 gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
          Length = 491

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 161/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +        +V+  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALSLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAA----TVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    IG     N+L  +    +    + T I  ++      G   R+        +T
Sbjct: 290 VNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPG---RFEVVDGGQDYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  ++   Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLTTAKQFA---KGNVYCIVGC---GGDRDRTKRPIMAGVATEYA 399

Query: 401 ISHVWLSG----FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S         A+ D   A  +  +               S     D++++  K 
Sbjct: 400 THAILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKG 459


>gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 486

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 165/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSESPASIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKG 455


>gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 487

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-PNLNCRVINLDDDFGRELAGLKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +    A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSEAPTNIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKG 455


>gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 489

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 165/475 (34%), Gaps = 47/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  +    +       +  I+IDSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 3   AEELLSTLMQKKVVGQLPKLITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V    +        + V      LG L              +I +TG+ GKT+   ++
Sbjct: 63  VIVTERLLQLDGEIAQVIVKNTTRTLGILAAKFFDY-PSKDIMMIGVTGTNGKTSVSGII 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMS 170
              L  + +  A  G+   ++   L  +                         + E+   
Sbjct: 122 HNILIGLGEKSALSGTIGFNLNGVLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVSSH 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLN 226
            L   R     V   +AV T +   HL     +E   + K  +F    + LEK   + LN
Sbjct: 182 GLALGRL--AGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + E     +       I+++G   NA F+       +  +  +++    +  V  H
Sbjct: 240 ADDPWSERYAGMTPY----PIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMH 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L    +       ++  I+ + +  P +GR ++    L       I   Y
Sbjct: 296 LLGEFNIYNVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSDLP----IQIFIDY 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ AI+         E + I ++G     G   ++    +AE  S+    +V L
Sbjct: 352 AHTPDAIEKAINAAMPYK-KPENKLIFLVGT---GGGRDKTKRPTMAEKASV--ADYVIL 405

Query: 407 SGFHVLA------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           +              D      H +Y+             S    GD+++   K 
Sbjct: 406 TTDDPRYEEFDSITGDLAKGMKHKNYACIGDRAEAVRHAVSVANPGDIIIFAGKG 460


>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
 gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
          Length = 483

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 172/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ I    I       + G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLNELLKNITPIKIIGNDDVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +  +    I    V+    A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AISVLC--EDLPEVLQEGITYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+ L  +         ++   E
Sbjct: 119 ATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     ++   A+ T +   HL      E   +AK   F+GL K      N
Sbjct: 179 CSSHAIHQKRI--GGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++     ADF+ R  +   E  ++E+       EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSIRTLADFRARILECHFEGMYLEID----GREVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  +  LS  H   GR +       +GF  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIHSP--EGFTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+G  I V G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALANVLNAIHEV-LDGKGHVITVCGA---GGNRDKGKRPLMAQEAVRQS-DKVII 399

Query: 407 SGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L      +   V                   GDVV+V  K 
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457


>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 512

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 167/482 (34%), Gaps = 46/482 (9%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  DL++ I     + G      V+ IS DSR + P   F A++G   DGH FI  AV+
Sbjct: 1   MSLADLIRQIPVLEAAGGSTTSLPVSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKT 120
           +GA  V+   ++   +   S+P   V+D   AL   A            +I +TG+ GKT
Sbjct: 61  RGAAAVLC-EEIPPVLPDASLPYLRVEDARQALALAARQFYGFASDALHVIGVTGTNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN----------------HIGVPLTLARMPVDVDFGI 164
           TT  ++T  L++       IG+                   HI   L    +       +
Sbjct: 120 TTARLITAMLNACGIRTGYIGTNLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAV 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R   + +  H AV T ++  HL     ++E A AK ++FE L   G   
Sbjct: 180 MEVSSHALVLQR--VYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQLSPQGFAV 237

Query: 225 LNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +N DD   E +       K     +          +  F      Q    + + +     
Sbjct: 238 INSDDPRAEEMVSKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASATIRLCFPDA 297

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +     G +   N+L    +   +         AL       GR +R      + F 
Sbjct: 298 QQTISTVLPGQYNVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFV 357

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +    Y   P ++  A+S L+ +      R I V G     G   +    ++  +    
Sbjct: 358 FV---DYAHTPDALFKALSTLNALK-SPASRLIVVFGC---GGNRDRLKRPEMGRIAVE- 409

Query: 400 NISHVWLS-----GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV-- 449
           N   V L+           + D + + I V                 + L  GDV++V  
Sbjct: 410 NADLVILTSDNPRDEDPEMIIDEIEKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAG 469

Query: 450 KS 451
           K 
Sbjct: 470 KG 471


>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
 gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
          Length = 496

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/419 (22%), Positives = 152/419 (36%), Gaps = 39/419 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+  + G  +       +  I  DSR       F  I G H D H FI    + GA 
Sbjct: 5   LEELVALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGAR 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            V+     V       + V  V ++  AL+ +             +I ITG+ GKTTT  
Sbjct: 65  AVLTERASVDVPDG--VAVLYVPNLQEALDTIVPYFYDYPARAMRVIGITGTNGKTTTSY 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDV-----DFGIFELG 168
           ++   L         IG+    I              + L +M  ++     D  + E+ 
Sbjct: 123 LVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKTGTI 223
              L   R     +    A  T +   HL     +E  A AKA +FE     G ++  T 
Sbjct: 183 SHALALGR--VAGIEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKEGKTA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+  E ++A +H      + ++G    AD   +  +   +   + +   GK +  
Sbjct: 241 VLNADDAASETMRAHTHC----PVITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFH 296

Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +H GI G     N+L  +G       +      AL+ F    GR +  R    Q F  ++
Sbjct: 297 LHTGITGLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELVR--EGQDFAVIV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           D  Y   P  M+   +VL       +GR IAV G   +     +     +   ++   I
Sbjct: 355 D--YAHTPDGME---NVLRTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAI 408


>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 497

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 180/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                L++ +  + + +         VN +  +SR + P   F  ++G  +D H      
Sbjct: 1   MKLSHLIELLGNNLVEVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHLLAPEL 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVG 118
            ++GA  ++    +      L IP+  V     A   L   +      K T I +TG+ G
Sbjct: 61  QERGAAALIAEKKIDV---DLDIPIIYVKSSRLAEAHLYMEINDHPYKKLTTIGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHI------------GVPLTLAR-----MPVDVD 161
           KTT   ++   L + ++  A +G+  N I              P TLA+     +  +++
Sbjct: 118 KTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATLAKYMKMAVEKNLE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+    L   R     +R  +AV+T +   HL   +  E+    K  IF  L+  G
Sbjct: 178 YFVMEVSSHGLAMHR--VDGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIFNLLKPVG 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKS 280
              +N D+     +K     L    I ++G    +DF++   +      +  V+   G  
Sbjct: 236 KAVVNSDNVNIGDIK-----LPRDKIITYGFGNESDFRMENLEISRTGMYFTVETPFGSK 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    +G H A N+  T+  +  L  D +  ++A+S F    GR +    A   GF  
Sbjct: 291 HKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEATKYGFDV 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D  +   P +++  +    ++S   EGR I V G     G+  +     + E+ S + 
Sbjct: 351 LVD--FAHTPDALEKLLKTAKKLS---EGRIIIVFGA---GGDADKGKRPLMGEIASRF- 401

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V L+               ++  + ++                 +     D V++
Sbjct: 402 ADVVILTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTLANRQDTVLI 459


>gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
 gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
          Length = 487

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 164/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-PNLNCRVINLDDDFGRELAGLKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSEAPTNIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKG 455


>gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 487

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 165/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSESPASIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/454 (23%), Positives = 178/454 (39%), Gaps = 31/454 (6%)

Query: 32  IDSRSIA--------PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            DSR +          +  FFAI G H+DGH FI    +KG    V+    +       +
Sbjct: 15  TDSRQVTGHAADSLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREEL 74

Query: 84  PVF------GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             +       VD  L  L  LA   R + +  +I ITGS GKT  KE L   L+      
Sbjct: 75  ATYADAQFTKVDSSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLADEYVIA 134

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               SYN+ +GVPL++ ++       IFE G+S   E++ L  ++RP I + T I  AH 
Sbjct: 135 RSPKSYNSQLGVPLSVHQLNESHTMAIFEAGISQTQEMQALEAIIRPTIGIFTNIGTAHD 194

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKS 253
             F   ++  + K  +F      GT+    D    D    LL    +       +S    
Sbjct: 195 QGFRTRKQKVAEKLRLFIH---AGTLIYCTDYADIDEEVNLLLKAVNPDMRFITWSL-TG 250

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + A +Q R        + + +  +    +          A    +   +V++L+    +A
Sbjct: 251 QKATYQGRI-----AGNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCLVTMLSLRTWSA 305

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +  S  +       R           LID+SYN +   ++ A+  L+Q       RRI 
Sbjct: 306 AELQSRLNRLRPVSMRLEQKEGINNCELIDDSYNNDMVGLQLALRFLNQ--QGTRSRRIV 363

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +L D+ + G+    F+  +  ++    +      G  V++            ++ T + L
Sbjct: 364 ILSDVLQTGQPEAEFYEQVGNLMRANEVGQFIGIGP-VVSRNKLFFADGSQFFATTEEFL 422

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             F  S L D   V+VK +    F R+++ L  +
Sbjct: 423 AQFSFSELRDS-TVLVKGARPFSFERIVHRLERK 455


>gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 487

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 164/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-PNLNCRVINLDDDFGRELAGLKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSEAPTNIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKG 455


>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
 gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
          Length = 487

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 153/391 (39%), Gaps = 34/391 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLLQ I            +NG+++DSR +     F A+KG   DGH FI  A++K
Sbjct: 1   MMKLSDLLQKISPLETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGHAFIAGAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA  ++V+  + A      +    V D   A+ K+          +  ++ +TG+ GKTT
Sbjct: 61  GASAILVSEPIPAETP-TDVTFVRVADTEDAIGKVATTFYGDPTQRLKLVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
              +L    + +        +  N+I             P+TL ++         ++   
Sbjct: 120 IATVLYHLFTELGFKCGLCSTVCNYIGTHAVPTEHTTPDPVTLNKLLGEMADEGCEYAFM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     + + R     +    A+ T +   HL      E    AK   F+GL K      
Sbjct: 180 ECSSHAIHQKRI--GGLDFAGALFTNLTRDHLDYHKTFENYRDAKKAFFDGLSKQAFAIT 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A     I ++     AD++ +  ++  E   +E+       EV  
Sbjct: 238 NADDKNGPIMVQNTKA----RIKTYSTRAAADYKGKILEESLEGMLLEIN----GREVSV 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L   G    L    D  ++ LS  HP  GR +  R    +G   +ID  
Sbjct: 290 RFVGRFNVSNLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFEAIRSP--KGVSAIID-- 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P ++   +S + +I  HG+ + I V G
Sbjct: 346 YAHTPDALANVLSSIDEI-VHGKAQVITVCG 375


>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 481

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 171/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +L+ ++  ++    +  V  + IDSR + P   F AIKG   DGH FI  AV +G
Sbjct: 1   MTLSSILKNVKPLNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQG 60

Query: 65  AGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+  T       G   + V   +D +G +  L        K  ++ +TG+ GKTT  
Sbjct: 61  AVAVLCETMPAELPQGVTFVQVESTEDAVGPVATLF-YGEPSKKLKLVGVTGTNGKTTIA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELG 168
            +L             + +  N+I                    L RM       +F   
Sbjct: 120 TLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMEC 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH    + +  L      V + +   HL      E   +AK   F+ L K      N D
Sbjct: 180 SSHAIAQKRIGGLT-FAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++     ADF+ +  +   E  ++E+       EV    I
Sbjct: 239 DKNGMVMVQNTRA----TVKTYSTRSMADFKAKILECHFEGMYLEIN----GAEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  +S  H   GR +  R    +G+  ++D  Y  
Sbjct: 291 GKFNVSNLLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPLRSP--EGYTVIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  ++ + ++  +G+G+ I V G     G         L  V ++     V ++ 
Sbjct: 347 TPDALENVLNAIHEV-LNGKGKVITVCG----AGGNRDKGKRPLMAVEAVKQSDRVIITS 401

Query: 409 FHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L      +   V                   GDVV+V  K 
Sbjct: 402 DNPRFEDPQAIINDMLAGLNAQQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKG 457


>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
 gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
          Length = 486

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 170/477 (35%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ ++   I    +  + GI+IDSR I     F AIKG   DGH +I  A++ G
Sbjct: 1   MKLNELLKNVKPIQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++V  + +    S +I    V     A+ K+          K  ++ +TG+ GKTT 
Sbjct: 61  ACAILV--EDIPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             +L             + +  N+I                + + LA+M  +     F  
Sbjct: 119 ATLLYNMFRKFGHKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKMVEEGCEYAFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    R +   ++    + T +   HL      E   +AK   F+ L K      N 
Sbjct: 179 CSSHAIHQRRI-GGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDDLGKDAFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++     A    T+ ++   + ADF+    +   E  ++EV  +    EV    
Sbjct: 238 DDKNGMIMVQNCKA----TVKTYSTKRAADFKAHLLECHFEGMYLEVNGK----EVGVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  + ALS      GR +        G   +ID  Y 
Sbjct: 290 IGKFNVSNLLAVYGAAVMLGKKPEDILVALSALKNVNGRLEPITSL--DGITAIID--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  + ++     G  I V G     G         L  + ++    +V L+
Sbjct: 346 HTPDALENVLLAIHEVLEGKGGHIITVCG----AGGNRDKGKRPLMALEAVKKSDNVILT 401

Query: 408 GFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         + D L      +   V                   GDVV++  K 
Sbjct: 402 SDNPRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKG 458


>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
 gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
          Length = 491

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 162/481 (33%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G    +D   R     S  +   +    ++
Sbjct: 234 KYAILNSDDPVAEEYMRSTAA----TVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYET 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGNVYCIVGC---GGDRDRTKRPIMASVAAEYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDGDVVVV--K 450
              ++ S         A+ D +    + +  E      + +   I  +  D D++++  K
Sbjct: 400 THAIYTSDNPRSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKA-KDADIIIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 533

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 170/480 (35%), Gaps = 55/480 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+Q ++           V  +  DSR + P   FFAI G   DG+ +I  AV +GA
Sbjct: 41  NVGDLIQGLELRLRKGKLDREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEAVDRGA 100

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
             ++   D+ +      I    V+DV  AL         R   +  +  +TG+ GKTT  
Sbjct: 101 VAIITEQDLGSHFP---IDYIQVEDVRMALAVVAREFYGRPDERLGLTGVTGTNGKTTVS 157

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTL-----------------ARMPVDVDFGIFE 166
            ++   +    K    IG+    I  P TL                           + E
Sbjct: 158 MLVQHLIGGDDKV-GLIGTIRYDI-GPRTLPSFRTTPESVDVYALLSQMEDGGCKDAVME 215

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---I 223
           +    + + R   + +   +AV   +   H+     +E    AK  +F G          
Sbjct: 216 VSSHGVDQKR--VYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIG-RAGAVPHSA 272

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N D ++   L   +   G     +FG+  +A  +  K +  ++ +  E+   G    V
Sbjct: 273 VVNMDCAYGRRLL--TELPGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQATV 330

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V   +G +   N+L  L        +++  +K +  F    G   R      +  + ++ 
Sbjct: 331 VSPLLGRYNVSNLLAALATGWAKGFEIEHLVKRIPSFRGVPG---RMELIHEKQPYNVLV 387

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y     ++K A  +L +I+P   G+ I V G   +     +S  +      +L +   
Sbjct: 388 D-YAHTDDALKNATGMLREITP---GKLIVVFGCGGDRDRSKRSLMLK----ATLEHADQ 439

Query: 404 VWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ +  +  +     + + +          V + E           +   GD V++  K 
Sbjct: 440 IFATSDNPRSESVEQIFEDMRLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKG 499


>gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
 gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
          Length = 429

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 176/448 (39%), Gaps = 58/448 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR  +P+ AF A+ G    G+ F+  A+  GA  V+ + D+  ++    +P     
Sbjct: 24  LTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLTDLDVPRAV---RVPSQAGQ 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
               AL   A A R +    ++ ITGSVGKTT K     AL++          YN    +
Sbjct: 81  GAREALFAWARAERAK-NPLVVGITGSVGKTTAKSYAAAALNAHFMPV-----YNTMPAI 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L          + E+G+  +GE+  L  LVRP + V+T I  AHL     +E +A  
Sbjct: 135 ACFLIEFGASGAPLVVEMGIDRVGEMAELVDLVRPDVGVVTAIGAAHLEQLGSLEGVARE 194

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  I +G                  L     A       ++G  +   +         + 
Sbjct: 195 KGVILQG---------------RRGLVGTQAAPWFPHTPTYGFGEGVTYAGEALTVSPQG 239

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +    Q     + V         A+  ++ L +       +  A + L+      GR + 
Sbjct: 240 AQFTFQ----GVPVTLPLASRVQAEAAVLGLALALEAGLPLPEAAQRLAAVQVPGGRYRV 295

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +      G FT+ID++YNA+P ++ AA+  L+       GRRI+VLG M E+G   +  H
Sbjct: 296 H-----PGRFTVIDDAYNASPLAVTAALDALATF----GGRRISVLGRMLELGATERELH 346

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  V +       +  G     L +   R        T+  L   + + + DGDVV+V
Sbjct: 347 AQIG-VHARQKADLTYGVGAFAAELGERAYR--------TVPELLEDLLAEVRDGDVVLV 397

Query: 450 KSSNSC------------GFYRLINLLL 465
           K+S               G   ++  LL
Sbjct: 398 KASRGISWTPEQRAQEGVGLDVVVEALL 425


>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus weihenstephanensis KBAB4]
 gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           weihenstephanensis KBAB4]
          Length = 491

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 161/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE  +AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G    +D   R     S  +   +    ++
Sbjct: 234 KYAILNSDDPVAEEYMRSTAA----TVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYET 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATEYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +   ++ +  E             S +   D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459


>gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
 gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
          Length = 486

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 161/474 (33%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I   +   V    +  +  DSR +     F AI G   +GH++I  A++ G
Sbjct: 1   MNLKTLLKNITIKTSLYVEDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V        +  +S  V        AL           K T++ +TG+ GKTT   
Sbjct: 61  ANAIVCEQLPQQPLPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGI--FELGMS 170
           +L        +    + +   ++      A             + + V+ G+    + +S
Sbjct: 121 LLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  ++    + T +   HL            K   F+ L  T    +N DD 
Sbjct: 181 SHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   + A       ++    +AD++    +   +   + +       EV    IG 
Sbjct: 241 NGAFMLQNTKAQKK----TYALKTHADYKAYIIESRFDGLLLRIN----QHEVWTKLIGE 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L      ++L  D    +  +S   P  G   R++ A++      I + Y   P
Sbjct: 293 FNAYNLLAVYATATLLGIDELETLTLISAIEPVAG---RFQYAVSATGVITIVD-YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +  ++ I  H E     V+G      +  +    D+A  LS     +V L+   
Sbjct: 349 DALENVLKTINDIRTHNET-LTTVVGCGGNRDKGKRPIMADIATTLS----DNVILTSDN 403

Query: 409 ---FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   + + +   +                +  +   GD++++  K 
Sbjct: 404 PRNEEPETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKG 457


>gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 487

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 166/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +S   ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLA----DGVWVTDDNPRSESPAIIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 491

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +      +  E             + +   D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKG 459


>gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
 gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
          Length = 543

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 17/365 (4%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           LG +N      +      +I +TGS GKT+TK  L   LS    T     SYN  +G+ +
Sbjct: 179 LGFINDARRIVKSSKDLDVIGVTGSYGKTSTKHALNAILSEQFNTLMTPESYNTPMGITI 238

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           T+   +       I E+G   +GEI  L  +  P   V+T++ P HL  F  I+ +   K
Sbjct: 239 TIRNFLKPIHSKFIAEMGAYKVGEINELCEIAYPKYGVLTSVGPQHLETFKTIDNVKQTK 298

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E+ E L + G  F+N DD             G   +Y++G  + AD++    +   + +
Sbjct: 299 FELIEYLPEDGIGFINIDDENIRDYYEN-KFQGKCKVYTYGIEREADYRASDIEVSEKGT 357

Query: 271 WMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              V  +   +E      +G H   N L ++G+   L   V+    A+    P   R + 
Sbjct: 358 TFNVHFKDGRVETFQTKLLGLHNIYNTLASIGLGYELGIPVEKMQMAVRKMKPVTHRLEL 417

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R     G FT+ID+++N+NP   K A+ VL Q+     G+RI +   M ++G      +
Sbjct: 418 RR----NGNFTIIDDAFNSNPVGSKMALEVLGQM----NGKRIVITPGMVDLGTAQYDLN 469

Query: 390 IDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDG 444
                 +   N  +V L G      +   L    +    ++ +E +   F  +   +  G
Sbjct: 470 KAFGTYMKD-NCDYVILVGKKQTEPIYAGLMEVEYPTETIYVAENLQDAFAKMHEVVEPG 528

Query: 445 DVVVV 449
             V++
Sbjct: 529 AFVLL 533


>gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 487

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSIVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L A        
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SDLKCRVINLDDDFGRELAAIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +KAL       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQRL----GGAEKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
           PH +GR + + G   +     +    ++ E L+      VW++          ++ D + 
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSESPASIFDDIR 417

Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   V + E        + +     DVVV+  K 
Sbjct: 418 PGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKG 455


>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
 gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
          Length = 491

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G    +D   R     S  +   +    ++
Sbjct: 234 KYAILNSDDPVAEEYMRSTAA----TVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYET 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATEYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +   ++ +  E             S +   D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459


>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
 gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 87/494 (17%), Positives = 170/494 (34%), Gaps = 64/494 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L +++    +G      + G+  DSR +     FFA+KG   DG+ F+  A++ G
Sbjct: 1   MLLSELTKSVMPLEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VVV+     ++    IP   V D   A++++A        +   ++ ITG+ GKTT 
Sbjct: 61  AVAVVVD----GTLTPQGIPWVRVADARLAMSRMAAAFYGFPTATLPLVGITGTNGKTTI 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167
             ++   L       A +G+ N                 + +  TL  +      G+   
Sbjct: 117 TYLIESILEKSGIPAAVLGTVNYRFREKAIPAPNTTPESVDLQRTLRELIDMGAKGVVME 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTG 221
             SH  + R         + V T +   HL     +E    +K  +F  L      +   
Sbjct: 177 VSSHALQQRR-VDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSELLAADRIKPKR 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD +   +   +       + S+G S NA  +  +           +      +
Sbjct: 236 CAVVNIDDPYGPRIVQGAAC----PVLSYGISGNAHVRAERVVFSVAGISCVLVTPQGQI 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G     N+L        +   +D       + H  +  G+  R A ++G   L
Sbjct: 292 NLHSELLGRFNLYNILAATAAGIAMELPLDAI--HEGLEHHPQVPGRVERVANDRGLTIL 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y     +++  +  L+++    +GR I V G   +     +    ++A   S  +I
Sbjct: 350 VD--YAHTGDALENVLRTLTELK---KGRIITVFGCGGDRDRGKRPVMGEIAGRYSDLSI 404

Query: 402 ----------SHVWLSGFH------------VLALKDALPRSIHVHYSETMDGLFLFIQS 439
                         ++G                 L+       +    E+         +
Sbjct: 405 ITSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYAA-VESRREAIRLAVA 463

Query: 440 SLVDGDVVVV--KS 451
           +   GD+V++  K 
Sbjct: 464 AARPGDIVLLAGKG 477


>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 489

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 89/424 (20%), Positives = 162/424 (38%), Gaps = 45/424 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ +    I          +S DSR +     F  IKG + DGHD+I  A++ G
Sbjct: 1   MKLYNLLKDLDYEIISGSVDIDARSVSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +V+  +    I + +I V  V +   AL  +A         +  ++ +TG+ GKTT 
Sbjct: 61  ALAIVIQEE--IKIDNENITVIKVRNTKLALASIANVFYNEPSKEINLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGS--------------YNNHIGVPLTLARMPVD-----VDFG 163
              +   L S KK  A IG+               N      L L  +  +      +  
Sbjct: 119 IHYIKDILESYKKRTAIIGTLGYEFNKEKASIQKVNPTTPESLELQGLFREFINKGAENI 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  S L + R         + V T ++  HL     +E   + K ++F+  E     
Sbjct: 179 VMEVTSSALAKQR--VEYCDFKVGVFTNLSQDHLEEHGTMENYKNEKIKLFKKCELG--- 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD   E +  K+       I ++G +K AD +  + +  ++    +++ +      
Sbjct: 234 VINLDDGIAEEIIQKASC----KILTYGINKEADIRATEIRYRNDCIIFKIKFRDIKWRW 289

Query: 284 V------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                   +  G     N+L  +G    L  D+   I  LS      GR +  +  LN+ 
Sbjct: 290 WCITDVKVNIPGKITVYNVLAAIGACIGLGMDMGDIISCLSNLRHVPGRLEMIKNNLNKN 349

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                   Y   P +++  + +  + +   +G+ I V G   +  +  +      A +LS
Sbjct: 350 IIV----DYAHTPDALERLLMMARETT---KGKLITVFGCGGDRDKSKRKVMGMAAGILS 402

Query: 398 LYNI 401
            Y I
Sbjct: 403 DYCI 406


>gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
 gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
          Length = 514

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 111/513 (21%), Positives = 186/513 (36%), Gaps = 53/513 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP----QGFVNG-ISIDSRSIAPQEAFFAIK-GPHYDGH 54
           M  L T   + + + G    I P       V G +  DSR+I P   F A+  G      
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPLDAAHRRVTGTVEFDSRAIGPGGLFLALPGGARRTAT 59

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIP-------------------VFGVDDVLGAL 95
           +    A  +G            +  S+  P                     G      A 
Sbjct: 60  NHAASAGSRGRRSRAGRPPGGGAGQSVVPPSGRAERIGRRPRARQRRVGGGGAGRAGQAG 119

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++   A      +          +   + ++   L+ + +  A  GS+NN +G P T+ R
Sbjct: 120 HRGGRAVGGPPGSPSSGSPARRARRRPRTLMPAVLAPLGEVVAPPGSFNNELGHPWTVLR 179

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ +
Sbjct: 180 ATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQ 239

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWME 273
            +  +G + LN DD     +   + A     +    +    D        ++  + +   
Sbjct: 240 AVPHSGAVVLNADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLERIGQAALYA 295

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +  S          H   N L    +     A V+    AL+   P      R +  
Sbjct: 296 ACPRCPSRGPDSGSAATHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVT 353

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHID 391
                 T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  
Sbjct: 354 TRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDR 413

Query: 392 LAEVLSLYNISHVWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLF 434
           +  +    ++S + + G        H  A+ +    S                   D   
Sbjct: 414 IGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAAL 473

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 474 ALLRAELRPGDVVLVKASNAAGLGAVADALVAD 506


>gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 492

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  RDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFCSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLQH---AVINVDDEYGAELVGRLKKDCPDLVV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S+ AD ++  +   S+      +      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++G +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
            +    E        +        D++++  K 
Sbjct: 432 PNPERVEADRAAAIRYAVERAAANDIILIAGKG 464


>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
 gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 178/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++++    I       + GI +DSR +     F A+KG   DGH +I  A++KG
Sbjct: 1   MKLENIIESVNVCEIKGNVDKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V   + +    +  +    V D   A+ KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ASAIVC--ETLPDTLNEHVTYIRVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+TL R+          +   E
Sbjct: 119 ATLLYNMFRKFGYKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T I   HL      E    AK   F+ L KT     N
Sbjct: 179 VSSHSVAQKRI--GGLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     I ++      +F+ +  +   E   M++     + EV   
Sbjct: 237 ADDKNGSVMVQNTKA----KIATYSLRTLCEFKGKVLEDGFEGMLMDIN----NREVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  +  LS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALRSK--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G GR I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALVNVLNAIHEV-LKGRGRVITVVGA---GGNRDKGKRPIMAQEAAKQSDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETMDGLF------LFIQSSL---VDGDVVVV--KS 451
           S        +D +   +     E MD +         I+++      GDV++V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKG 457


>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
 gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
          Length = 484

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 179/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A+  + +       + GI IDSR + P   F AIKG   DGH +I  A++ G
Sbjct: 1   MKLEEIIKAVTVNELIGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V   + +       +    + D  GA+ KLA A      SK  +I +TG+ GKTT 
Sbjct: 61  ACGIVC--EQLPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDLIGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+TL R+          +   E
Sbjct: 119 ATLLYKMFRQFGYKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + +       +R    + T I   HL      E    AK   F+ L K+     N
Sbjct: 179 VSSHAIAQ--RRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKSAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +++   + A     I ++      DF+ +  +   +   +++     + EV   
Sbjct: 237 LDDKNGKVMVQNTKA----RIAAYSLRTLCDFKGKVLEDGFDGMLLDIN----NREVNVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDALRS--RRGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+GR I V+G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALVNVLNAIHEV-LRGQGRVITVVGA---GGNRDKGKRPLMAQEAVKQS-DKVII 399

Query: 407 SGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQS---------SLVDGDVVVV--KS 451
           +  +      +D +   +     + M  +   +                DVV++  K 
Sbjct: 400 TSDNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDVVLIAGKG 457


>gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 487

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 165/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSESPASIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           8C-3]
          Length = 216

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 123/216 (56%), Positives = 157/216 (72%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           EAFFAIKG   DGHD+   A+  GA L+VV+   + ++G L++P+  VDDVL AL +L  
Sbjct: 1   EAFFAIKGDRVDGHDYASMAMANGASLLVVSEARLPAMGRLTVPMIVVDDVLAALGRLGQ 60

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A+R RS+A IIA+TGSVGKTTTKEML   LS   K +A + S+NNH GVPLTLARMP D 
Sbjct: 61  ASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDT 120

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+G+FE+GM+H GEIR L  ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  
Sbjct: 121 DYGVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPG 180

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           G + LN D+  F  L   + +LG++ I+SFG+   A
Sbjct: 181 GHVVLNRDNDQFNFLDRTAQSLGVEHIHSFGQHAKA 216


>gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
 gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
          Length = 522

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 173/475 (36%), Gaps = 50/475 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            DLL      +    P    + G++ DSR++ P   F AI+G   DGH FI  AV  GA 
Sbjct: 42  ADLLDETIAGAEAPDPDTLAIGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGAR 101

Query: 67  LVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
           LVV       +       VF  V D   AL + A A       +  ++ +TG+ GKTT  
Sbjct: 102 LVVCEALPTRARERFPGVVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVA 161

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFEL 167
            ++   L ++ +T   + +                   + +  TL RM          E+
Sbjct: 162 YLVHHLLEALGETAGLLSTIKVQAGGETTALALTTPGPLVLHRTLRRMVDRGCTACAMEV 221

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R   H +   +A+ TT++  HL     +++  +AK  +F+ L    T   N 
Sbjct: 222 SSHALDQDR--VHGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNA 279

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A + A     + SFG  ++AD +    +   +   + +       E     
Sbjct: 280 DDEAGPTMVADTEA----RVVSFGLDRDADIEATVLEARLDGQRVRLD----GHERDTQL 331

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A NM    G  + L    +    AL+   P  GR +  R        T+I + Y 
Sbjct: 332 AGRFNASNMAAAYGTGTALGHAPEAVADALADAPPVPGRVEPLRF---GDGTTVIVD-YA 387

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +   +P        V G   +     +     +AE L+      V ++
Sbjct: 388 HTPDALENVLRTVRDTTPAKAA-LWCVFGCGGDRDAGKRPTMGRIAERLA----DRVIVT 442

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            + D + R   + +    +          + GDVVV+  K 
Sbjct: 443 SDNPRTEAPVAILRDICDGVERPESMRWIVDREEAIQAAADETMPGDVVVIAGKG 497


>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
 gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
          Length = 499

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 174/488 (35%), Gaps = 55/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+A     +    Q  +  ++ DSR++     FF ++G H DGH+F   A + 
Sbjct: 1   MKQLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  ++    +  +     + +  V D   A+  +          K  +IA+TG+ GKTT
Sbjct: 61  GAAAIIAEKKIDVASD---VTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIF 165
           T  +++  L  +      IG+ +  IG                       +  +V     
Sbjct: 118 TTHVISHILHHVGYKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQMLKENVTHVCM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF------EGLEK 219
           E+    L   R +        AV T +   HL     ++  A AK+ +F      + ++ 
Sbjct: 178 EVSSHSLVMGRVI--GCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQIKD 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             + ++N DD +  ++           + ++G + N D +        + S  ++QL  K
Sbjct: 236 GKSAWINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLGEK 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +    IG     N++  +G       D+     ALS F    GR +       +G  
Sbjct: 296 RYVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELIE----EGQS 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +   Y   P  ++  ++   +I+   +GR I   G     G+  +     +  + + Y
Sbjct: 352 FSVVVDYAHTPDGLEKILTTAKEIA---KGRLITCFGC---GGDRDKLKRPIMGRIAANY 405

Query: 400 NISHVWLSG------------FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGD 445
           +   V  S                  ++D      ++ Y           +  S   + D
Sbjct: 406 SDVVVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQD 465

Query: 446 VVVV--KS 451
           +V++  K 
Sbjct: 466 IVLIAGKG 473


>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 489

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 163/478 (34%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++ +    I    +  + GI   S+ +AP   F A KG  +DG  +I  AV+ G
Sbjct: 1   MKLKRLIKDLPNAEIKGSKEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYIAEAVETG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  V+          SL +      +V     KL      R   +  ++ +TG+ GKTT 
Sbjct: 61  AAAVL----NDIFDPSLKVSQIIHPNVAVVEGKLVSAFYHRPGEELLMVGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFGIFE 166
             ++     S++     IG+    IG     A                         + E
Sbjct: 117 SYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREMVNQRSQAAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R     +   + + T ++  HL     ++     K ++F  L+        
Sbjct: 177 VTSHALHQGR--VSEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSLDPEAKKRKN 234

Query: 221 --GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N DD +FE +           I ++G + +AD +  + +  +E     +  QG
Sbjct: 235 YPKAAVVNIDDPWFEKIIDGCRV----PIITYGIANHADLRAEEIQLGAEGIVYTLVHQG 290

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K   V    IG     N L T+G    L   ++  + A+  F P  G   R     N+  
Sbjct: 291 KRYPVSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPG---RLEYVPNKRG 347

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L  + +   P ++K  ++ L +++   +G+ I V G   +     +S    +AE  S 
Sbjct: 348 LKLFVD-FAHTPDALKNVLNCLKELT---QGKLIVVFGCGGDRDPYKRSQMGRIAEEFSD 403

Query: 399 YNI-------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             I       S        +  +             E                DVV++
Sbjct: 404 LAIITSDNPRSENPA--NIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPEDVVLI 459


>gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 487

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 179/475 (37%), Gaps = 53/475 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DLL  +    +    +  V  I+ D+R++     F  +K  + D H F   A+++GA ++
Sbjct: 8   DLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAIKQGATIL 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEML 126
           ++  ++        + +  VDD   A++ +A     +      +I +TG+ GKT+    +
Sbjct: 68  MIEHEIDQVPEK--VTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTGTNGKTSITHFI 125

Query: 127 TIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGIFEL 167
              LS++ +    IG+  N                   I +  +L  M      +G+ E+
Sbjct: 126 AQVLSTLGEKTGVIGTIRNTLEGEKLKTKKINPTTPDAIELQASLKEMLDKGATYGVMEV 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S L + R   + +   + V T +   HL     +E   +AK ++F+         +N 
Sbjct: 186 TSSALAQNR--VYGMAYQVGVFTNLTQDHLEEHGTMEAYGAAKLKLFKNCR---IGIVNQ 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    L+  K    G   + ++G  K ADF+  +  Q       ++   GK   +    
Sbjct: 241 DD----LMAEKIKQEGHCKVITYGIDKKADFKAEQIHQGLTGVDFKLIYLGKQYSINFPV 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L T+  +  L  ++   ++AL   +   G   R++   N     ++ + Y 
Sbjct: 297 PGRFSVYNALATIATLVSLGYELTNILEALHWINEVPG---RFQIIPNTKGVLVVVD-YA 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P S+K  +     +     G+   V G     G+   S   ++  +   Y+   +  S
Sbjct: 353 HSPDSLKQLLQTTKDL---ISGKLTVVFGC---GGDRDTSKRAEMGTMAGAYSDLTIITS 406

Query: 408 G-------FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++A  +     +   Y   +      +   +   +GD VV+  K 
Sbjct: 407 DNPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAVVIAGKG 461


>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
 gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 489

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 167/476 (35%), Gaps = 50/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q +   +  +     +  +  DSR I P + F A  G   DG D+I  A+ K A  V 
Sbjct: 6   LSQLLDAKNKALTADVLIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVF 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
              +         +P+   +++   + ++A         +  II ITG+ GKT+  + + 
Sbjct: 66  YEANQYNPSIQTKVPLIPFENLQHRIGEIAARFYDDPSCEMEIIGITGTNGKTSCAQFIA 125

Query: 128 IALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFG-----IFELGMSH 171
            AL S       IG+             +    P+ L +   ++          E+    
Sbjct: 126 QALQSQGIRCGVIGTLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHA 185

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L +       V+  IAV T ++  HL     +E  A AK  +F+      T  +N DD+ 
Sbjct: 186 LHQ--RRVEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQ-PGLHTGVVNCDDAL 242

Query: 232 FELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + + A  H     T+  +  +   D           +  ++   +EVQ           
Sbjct: 243 GKRIIA--HYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTP 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+L  L ++ +     D A+  LS      G   R +   +Q    +I + Y
Sbjct: 301 LFGRFNISNLLAVLSVLCLCEIPFDKALLELSQLRNVPG---RMQVVDSQRQPQIIVD-Y 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ A++ L +   H +GR I V G     G+  +     +A V    +   + L
Sbjct: 357 AHTPDALEKALTALRE---HCQGRLICVFGC---GGDRDRGKRPQMAAVAEQ-HADQIIL 409

Query: 407 SGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +  ++        V           +        D+V++  K 
Sbjct: 410 TNDNPRTESPLTIIQDIQAGFKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKG 465


>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 486

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 160/452 (35%), Gaps = 36/452 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   + G+ IDSR     + +F ++G  +DGH+FI   + KGA  +V +          
Sbjct: 10  APDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSK--PVEHMKK 67

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--Y 137
            I    V++V   LN++A            +  +TG+ GK+T   ++    S        
Sbjct: 68  GIAYIQVENVNRTLNRVASLFYGHPSRNMKVFGVTGTNGKSTITSIIKDVYSHFAPCGYI 127

Query: 138 ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             I      + +P +L            +  VD       L +S  G        V   +
Sbjct: 128 GTISISYGEVTLPPSLTTPDAILIHKTMKDMVDAGMQAVALEVSSHGLELGRVQSVDFDV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV + +   HL     IE    AK ++F  L+K G   LN DD++ + L   + A     
Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKDGVAVLNADDAYVDQLADATDA----R 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G   +A +Q    +     S   +   G+  EVV + +  +   N+L  +  ++  
Sbjct: 244 VVTYGIDHHASYQAENIRIEKTGSRFTLVHDGEHYEVVTNLVALYNIYNLLGAVAAMAES 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   +  L+     EGR +R     ++G    +   +   P  M+        I+  
Sbjct: 304 GIPIAKQLPYLNEIRQIEGRMERI----DEGQLFNVIVDFAHTPDGMEKVFEYAKDITEE 359

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRSI 422
           G    IAV G     G+          E+ S Y  S +             + + +   I
Sbjct: 360 GHS-IIAVFGS---AGKRDTKKRKVFGEIASRYCDSIILTEDDPRDEDPREIANEIKSGI 415

Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVVKS 451
                 + E           S    D V++  
Sbjct: 416 SDTNNIFIEDRYAAIRQAIESANMKDTVLILG 447


>gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
 gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
          Length = 543

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 154/350 (44%), Gaps = 16/350 (4%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S  +++ ITGS GKT+TK ++   L      YA   SYN  +G+ L +   +  +    +
Sbjct: 192 SDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVLV 251

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G+ + G++  L  +  P  +V+TTI  AHL      + IA+ K  + E     G   
Sbjct: 252 LEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLVERTAPDGPAV 311

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD     +  ++ A  +  I + G   +AD      +  +  +   V     +    
Sbjct: 312 LNVDDERVAAMAERA-AGPVWRISTEG-HPDADITASDIRYDTGGTAFNVTDDTGTTVTF 369

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L+ + +   +   +     A+    P E R +      ++G  T+ID
Sbjct: 370 ETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQL----RSRGDVTIID 425

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++N+NP   + A+ +LS++     G+R+ V   M E+G+   + + D   VL+ +++  
Sbjct: 426 DAFNSNPVGARNAVEILSEMD---GGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLDL 482

Query: 404 VWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           V L G    A     L +    +  +   +++      ++  L  GDVV+
Sbjct: 483 VVLVGEEQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532


>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Heliobacillus mobilis]
          Length = 528

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 174/467 (37%), Gaps = 60/467 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  ++G++ DSR +AP   FF I G   DGH+F   AV+ GA ++VV   +      L 
Sbjct: 52  PKQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVERFV-----DLK 106

Query: 83  IPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P   V       AL   A          +I +TG+ GKTTT  M+   L +   +   I
Sbjct: 107 VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVI 166

Query: 141 GSYNNHI---------------GVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+  N +                +   LA M  D  D  + E+    L + R L   V  
Sbjct: 167 GTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVVMEVSSHSLDQHRVL--GVNF 224

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSFFELLKA 237
            IA  T +   HL     +E   +AK ++F  L     K G      +N DD   +    
Sbjct: 225 DIAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSADYFLQ 284

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            S    +    ++G  ++A  + + W    + +   VQ  G ++++     G     N L
Sbjct: 285 VSSVPAV----TYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFNISNSL 340

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  I+  + +  ++AL       G   R+        F++I + Y   P  +   +
Sbjct: 341 AAFTVGWIVGMEPEQIVEALQSLRGVPG---RFESVDQGQPFSVIVD-YAHTPDGLVNVL 396

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------- 408
           +    ++   EG+ + V G     G+  ++    +  V++  +   V  S          
Sbjct: 397 NTAEALA---EGKIVTVFGC---GGDRDRTKRPIMGAVVAEMSDIAVVTSDNPRTENPHR 450

Query: 409 --FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +L    A+P  I                S    GD+V++  K 
Sbjct: 451 IIEDILPGVQAVP-GIEYKVEPDRKKAIALALSMANPGDLVMIAGKG 496


>gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 94/463 (20%), Positives = 170/463 (36%), Gaps = 56/463 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I +DSR +     F  IKG   DGHDF   AV+ GA  ++    +      + 
Sbjct: 19  ENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPL-----DVD 73

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V D   A+     A   +   +  +I +TG+ GKTTT  ++   +    K    I
Sbjct: 74  VPVIVVRDSRRAMAVLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQIVRKANKKTGLI 133

Query: 141 GSYNNHI---------GVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ +  I           P +L             VD  I E+    L   R   H    
Sbjct: 134 GTVHIKIGDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGR--VHGCDY 191

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAK 238
            +AV T +   HL     +EE  +AK  +F  L      E+     LN DD   +  K  
Sbjct: 192 DVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQYYKHM 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A    T+ ++G   ++D   ++          ++     +  V    IG     N+L 
Sbjct: 252 TAA----TVITYGTKTDSDIMAKRIDIVPNGMAFDLITPHGTARVKTKLIGLFNVYNLLA 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +    +        ++A+       G   R+        FT+I + Y   P S++  + 
Sbjct: 308 AVSACLVSGIPFPVIVEAIEEISGVAG---RFETVDEGQDFTVIVD-YAHTPDSLENVLK 363

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FH 410
              Q +         V+G     G+  ++    +A+V   Y    ++ S           
Sbjct: 364 TAQQFARKN---VYVVVGC---GGDRDRTKRPLMAKVAVQYADVAIFTSDNPRSEDPEQI 417

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  ++  +P   +V   +  + ++  I+ +  +GD+V++  K 
Sbjct: 418 LRDMEAGVPGERYVTIVDRKEAIYYAIEQA-QEGDIVLIAGKG 459


>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 491

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPNES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 487

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 164/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V         +    +
Sbjct: 15  DALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVAGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  + G L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L A        
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SDLKCRVINLDDDFGRELAAVKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +KAL       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +     + E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLA----DGVWVTDDNPRSESPVSIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
 gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
          Length = 483

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 170/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ I    I       + G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLNELLKNITPIKIIGNDDVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +  +    I    V+    A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AISVLC--EDLPKVLQEGITYVQVESTEDAVGKVATLFYGDPSHKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+ L  +         ++   E
Sbjct: 119 ATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     ++    + T +   HL      E   +AK   F+ L K      N
Sbjct: 179 CSSHAIHQKRI--GGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDSLPKDAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A    T+ ++     ADF+ R  +   E  ++E+       EV   
Sbjct: 237 ADDKNGMIMVQNTKA----TVKTYSIRTLADFRARILECHFEGMYLEID----GREVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  +  LS  H   GR +       +GF  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIHSP--EGFTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+G  I V G      +  +     +A+     +   V +
Sbjct: 345 AHTPDALANVLNAIHEV-LDGKGHVITVCGAGGNRDKGKRPL---MAQEAVRQS-DKVII 399

Query: 407 SGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L      +   V                   GDVV+V  K 
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457


>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 484

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 166/477 (34%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L+ +I+   I       + G++IDSR I     F A+KG   DGH +I  A++KG
Sbjct: 1   MIISKLISSIKPIEIIGDANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +  + +  +    V D   A              K  ++ +TG+ GKTT 
Sbjct: 61  AVAVLC--EDLPEVKAPHVTYIQVQDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFEL 167
             +L      +      + +  N+I                    L+RM       +F  
Sbjct: 119 ATLLYNLFRKLGYKCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + +  L      + T +   HL      E    AK   F+ L KT     N 
Sbjct: 179 CSSHAIAQKRIAGL-HFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDSLPKTSFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A    T+ ++     ADF+ R  +   E  ++E+       EV    
Sbjct: 238 DDKNGMYMVQNTKA----TVKTYSARSLADFKARIIECHFEGMYLEID----GREVGVRF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L    +  + ALS      G   R     +   FT I + Y 
Sbjct: 290 IGKFNVSNLLAVYGASVMLQQQPENILLALSTLQSVSG---RLEPIYSPEGFTCIVD-YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +  +  +G+G+ I V G     G   +     +A+     +   V L+
Sbjct: 346 HTPDALENVLLAIHDV-LNGKGKVITVCGA---GGNRDKGKRPLMAQEAVKQS-DKVILT 400

Query: 408 GFHVLA---------LKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +K+ L  +                   S    GDVV+V  K 
Sbjct: 401 SDNPRFEDPQDILNDMKEGLNNAQLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKG 457


>gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
 gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
          Length = 493

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 178/479 (37%), Gaps = 51/479 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++G +I I     + G+  DSR I P + FFA KG   DG  FI  A++KGA  ++
Sbjct: 3   LSQLLRGMNISIATDPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAAAIL 62

Query: 70  VNTDMVASI--GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEM 125
           V  D   +I   S SIP+  +  +   L  LA            +I ITG+ GKT+    
Sbjct: 63  VEPDENYTIHLKSSSIPIIALHHLTSQLGSLAARFYGYPSRYLPVIGITGTNGKTSCTHF 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGM 169
           L  +L  ++++   IG+  N     L  A++                       + E+  
Sbjct: 123 LADSLQKLQRSCGVIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVVMEVSS 182

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +A +T +   HL     ++  A AK   FE L     I LN DD
Sbjct: 183 HRLAQKRL--NGTEFSVAALTNLTRDHLDYHKTMDAYAKAKRSFFE-LPGVQHIVLNADD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + +L   +       + YS  + +          ++K+    +    E+      + + 
Sbjct: 240 PYAQLWLTEFEKQLPISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDVFIE 299

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +  + G     N+L+ L ++  L   +    + LS     +GR + +R         ++ 
Sbjct: 300 NQFLMGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFRVK----GKAIVV 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++  +  L     H  G+   + G   +  +  +     +AE        H
Sbjct: 356 VDYAHTPDALQQVLQALRS---HCRGQLYCLFGCGGDRDKGKRPLMAAIAEE----GADH 408

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++  +            ++     +  ++Y         +   +    D+V++  K 
Sbjct: 409 IIVTNDNPRYEDPFQIFQDIRQGFKGNKAIYYEPERKKAIAYALKAAQPSDIVLIAGKG 467


>gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
 gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
          Length = 500

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 173/471 (36%), Gaps = 47/471 (9%)

Query: 10  LLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           LLQ + G     +       +  I  +S ++   + F A KG  +DGHDFIL A  KGA 
Sbjct: 8   LLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGAS 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124
           L++   +        S+    V+D+  A   L+            I+ +TG+ GK+TT  
Sbjct: 68  LIIAQDEEKIPTND-SLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNGKSTTVS 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG---------------- 168
           ++   L    K    I +    I   +   + P +    I EL                 
Sbjct: 127 LVHHILQKSDKDSTLISTVEIKIKDEVV--KEPYNTTPSILELSKILKNSKENNIEFINM 184

Query: 169 --MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH    R +   V+  I   T I   HL      EE  S K  +   L+  G I +N
Sbjct: 185 EVSSHAIHQRRI-EGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDEGKIVIN 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            D      L         K + ++G  KNADF +  ++Q  +Q    ++ +  KS E+  
Sbjct: 244 LD-----RLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHKSYEIRS 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H IG     N+     I ++   + +  I ++S F    GR +    + + GFF +ID  
Sbjct: 299 HLIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVID-- 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-------HIDLAEVLSL 398
           +   P ++   +   S I+   EGR I V G      +  +         H D+  + + 
Sbjct: 357 FAHTPDALNEVLKTASSIT---EGRIITVFGAGGNADKGKRKLMGQVVSEHSDVIVLTND 413

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       +  +   + +  H       +            GD+V++
Sbjct: 414 DPKDEDP--DQIIEDVSKGIDQDKHFIVIPDRETAIDTALRFANKGDIVII 462


>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
 gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
          Length = 491

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 159/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G    +D   R     S  +   +    ++
Sbjct: 234 KYAILNSDDPVAEEYMRSTAA----TVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYET 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    + T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATEYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +   ++    E             S +   D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459


>gi|289758277|ref|ZP_06517655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
 gi|289713841|gb|EFD77853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
          Length = 364

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 90/362 (24%), Positives = 146/362 (40%), Gaps = 26/362 (7%)

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+ + +  A  GS+NN +G P T+ R     D+ I E+   H G I  L  +  P 
Sbjct: 1   MAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPS 60

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+  +  AHL  F   E IA  KAE+ + +  +G + LN DD     +   + A    
Sbjct: 61  IGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAA---- 116

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +    +    D            +    +       EV     G H   N L    +  
Sbjct: 117 RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVAL 176

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+
Sbjct: 177 ECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIA 234

Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-------HVLALK 415
             P    R  AVLG+M E+GE + + H  +  +    ++S + + G        H  A+ 
Sbjct: 235 HQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVL 294

Query: 416 DALPRSIHVHY----------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +    S                   D     +++ L  GDVV+VK+SN+ G   + + L+
Sbjct: 295 EGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALV 354

Query: 466 EE 467
            +
Sbjct: 355 AD 356


>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
 gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
          Length = 491

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 159/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T  RM   +V+  + E
Sbjct: 116 SHIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRMIEENVNSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L      ++ 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD   E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDPVAEEYMRSTAA----TVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPNES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    IG     N+L  +    +    + T +  +       G   R+        +T
Sbjct: 290 INITMKLIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPG---RFEVVDGGQDYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLITAKQFA---KGNVYCIVGC---GGDRDRTKRPIMAAVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S          + D +      +  E             S     D++++  K 
Sbjct: 400 THAILTSDNPRSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKG 459


>gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 523

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/397 (24%), Positives = 170/397 (42%), Gaps = 26/397 (6%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA------RLRSKATIIAITGSVG 118
           A L++V   +  S   + +P   + + L    +   AA      R  +  +I+ ITGS G
Sbjct: 131 AALILVTPFLFLSAWLMVLPAAWISEPLEMAIRNHYAADAAKLLRSNNALSIVGITGSYG 190

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRF 177
           KT+ K +L   LS +  T    GSYNN +G+ LT+  ++    +  + E+G  H+ EI  
Sbjct: 191 KTSVKTILNELLSDVYYTLMTPGSYNNQMGITLTIRNKLERLHEVFLCEMGADHVKEIHD 250

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L   V+P   V+T++   HL+ F  +E I   K ++ E L   G  F+N D+++      
Sbjct: 251 LMQFVKPQYGVVTSVGAQHLATFGSMENILHEKMQMIECLPADGIGFVNRDNAYIRTYSI 310

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        I  FG S++AD++    +   E +   V  +G+S       +G H   N+ 
Sbjct: 311 Q----NTCRIVWFGMSEDADYRCCDIRYSEEGTSFTVIQEGQSHRFHTKLLGKHNVVNIT 366

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L    +    A+      E     +R  + + F TL+D++YN+NP   + A+
Sbjct: 367 CAIAVAHTLGVSWEIMALAVEKLPYVE-----HRLQVRKSFCTLLDDAYNSNPEGARCAL 421

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVL 412
            VL Q+    + +R  +     E+GE  +     L E ++   +    L G         
Sbjct: 422 EVLKQM----KHQRFIITPGFLELGEQQEEEQYKLGEEIADS-VDTAVLVGAVQTKSIAA 476

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L D+      VH  ++       +Q      D V++
Sbjct: 477 GLTDSGFPKERVHVCDSFQEALAIVQKQAQLQDCVLL 513


>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
 gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
          Length = 482

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 157/462 (33%), Gaps = 54/462 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I  DSR +     F  +KG   D HDF   A             +      + 
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA-----AAQGAAAIVAERPIDVD 64

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +   +L         +   K  +I ITG+ GKTTT  ++   + +       I
Sbjct: 65  VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124

Query: 141 GSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  I              LTL +         VD  + E+    L   R   H    
Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR--VHGCDY 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAK 238
            +AV T +   HL     +EE   AK  +F  L       +     LN DD+  E     
Sbjct: 183 DVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A    T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L 
Sbjct: 243 TAA----TVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +    ++T I  +       G   R+        +T+I + Y   P S++  + 
Sbjct: 299 ATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYTVIVD-YAHTPDSLENVLK 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
              Q +   +G    ++G     G+  ++    +A V + Y    ++ S         A+
Sbjct: 355 TAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAI 408

Query: 415 KDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            D + +    +  E             +++   D++++  K 
Sbjct: 409 LDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 176/469 (37%), Gaps = 58/469 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++ ++ DSR + P   FFA++G   DGHD+   AV++GA  VVV   +        I
Sbjct: 19  DVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVERGAVAVVVEQPVDLPDE---I 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               VDD   A+ +              I+ +TG+ GKTT   +L   L     T A +G
Sbjct: 76  VQVVVDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKTTMTYLLESVLKQAGYTPAVVG 135

Query: 142 SYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +N +              L L R+  +      D  + E+    L  ++     +   
Sbjct: 136 TISNRMGDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHAL--MQSRVVGLTFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALG 243
           +AV T + P HL     +E   +AK  +F+  +  G  T  +N DD +   L  + +   
Sbjct: 194 VAVFTNLTPEHLDYHKNMESYFAAKTRLFKEPQIYGDFTAVVNTDDPYGAKLVRELNEP- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S G  + AD ++   +Q  + +   ++     + V    +G    +N+L  +G  
Sbjct: 253 ----LSVGMHRGADVRVCDVEQTMQGTVATLETPQGEITVRSPLVGPFNLENLLCAVGAG 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L   + T  + L+  +   GR +     L      LI   Y     ++  A+  ++ +
Sbjct: 309 LVLDLPITTIEQGLAAANRVPGRLEPVDNTLG----ALIVVDYAHTGDALAKALEAMAAL 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-----------------HVWL 406
            P    R I V G   +   L +    ++A   S  +I                   V +
Sbjct: 365 KPQ---RIITVFGCGGDRDTLKRPAMGEVAGRYSDLSIVTSDNPRTENPAKIIDDIKVGI 421

Query: 407 SGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
                    D  P S+   Y   E      ++  + L  GD++++  K 
Sbjct: 422 ERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVNQLRAGDLLLIAGKG 470


>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
 gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 180/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   I    +  + G++IDSR +     F A++G   DGH +I  A++KG
Sbjct: 1   MILSELLKAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + V       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AVAVLC--EDVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL ++     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +R    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKGAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E   ++      + E+  H I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGKILESHFEGMLLDFN----NHELAVHFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R    +G   ++D  Y  
Sbjct: 291 GRFNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSP--KGITAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S 
Sbjct: 347 TPDALINVLNAIHGV-LEGKGKIITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITSD 402

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLF------LFIQSSL---VDGDVVVV--KS 451
                  +D +   +     + M            I+++      GDV++V  K 
Sbjct: 403 NPRFEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKG 457


>gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 166/460 (36%), Gaps = 52/460 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+ +  D+R +     F AIKG   DGH FI  A++KGA  +VV  +     G   +
Sbjct: 22  DFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVVQEETDDIQG---V 78

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V++   AL  L         S   +I +TG+ GKTT   M+       K     IG
Sbjct: 79  TIVRVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIFRDQKDRTGLIG 138

Query: 142 SYNNHI---------------GVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    I                +  T A M  + V     E+    L  I+     +   
Sbjct: 139 TMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIAL--IQGRVWGIDVD 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHA 241
            AV T     HL     + E A AK+ +F  L        T  +N DD   +     +  
Sbjct: 197 TAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEMGKNFAQDTAT 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + ++G   +A  +       S+ +  ++++      +    +G     N+L   G
Sbjct: 257 ----QVLTYGIKNDAMIKASNVNIHSQGTDFDLKVFEDEYHLHVKTVGMFNVYNLLAAFG 312

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   V   I++L  F   +G   R +   +    + I + Y+  P  +  A+  ++
Sbjct: 313 AAYANGVSVHAIIESLEKFPGVKG---RLQLISSDCGISAIVD-YSHTPDGLLNALETIN 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD- 416
           + +    G    V+G     G+   +    +A++   Y+   ++ S          + D 
Sbjct: 369 EFAS---GDVYCVVGC---GGDRDATKRPKMAQIAVEYSNHPIFTSDNPRTEDPEKILDQ 422

Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +P      Y +  + +   + ++   GD++++  K 
Sbjct: 423 MLSGVPEKNVPVYLDRREAIQAAV-NAANPGDIILIAGKG 461


>gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 488

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 162/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAVAYEVEGSNVLPLTDV 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +          +  ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 76  PLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 136 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E   +AKA++F          +N DD F   +          
Sbjct: 194 VAVLTNLSRDHLDYHGTMEAYGAAKAKLFAW-PNLNCRVINLDDDFGRQMAGLKQES--- 249

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R+ K   +     +        +    +G     N+L  +G + 
Sbjct: 250 RLITYSQLDSSAYLYCREAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 310 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415
           PH +GR + + G   +     +    ++ E L+      + ++  +            ++
Sbjct: 363 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGICVTDDNPRNESSSQIFADIR 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +     DVVV+  K 
Sbjct: 419 PGFTAADKVSFIEGRAQAIAELIAGASADDVVVLAGKG 456


>gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 460

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 174/482 (36%), Gaps = 61/482 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++    ++   I       V+G+ IDSR I   + F  I G   DGHDF   AV  G
Sbjct: 1   MQLNEFASLLKTSQIVGDETVEVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV   +      +++P   V +   A+                II +TG+ GKTTT
Sbjct: 61  AVALVVERRL-----DVNVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   L         +G+    I                +   LA M   D D+ + E
Sbjct: 116 TYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L   R     +     V T +   HL     ++    AKA++F  +        +
Sbjct: 176 VSSHALDFGR--VKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEK 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     LN DD   E  +  + A     + ++G  K  D +    +  +E +   +    
Sbjct: 234 QRSYAILNVDDEASETFQRLTSA----EVITYGIEKECDVRASNIRITAEGTEFTLTTFE 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +    +G     N L  +         ++   K+L+      GR +    +  Q +
Sbjct: 290 GTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEV--VSEGQDY 347

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D  Y   P  ++  +S + + +   EG    V G     G+  ++    + +V + 
Sbjct: 348 LVLVD--YAHTPDGLENTLSTVKEFA---EGHVYCVFGC---GGDRDRTKRPLMGKVTAK 399

Query: 399 YNISHVWLSGFH------VLALKDALPRSIHVHYSETMDGLF----LFIQSSLV---DGD 445
           Y+  H++++  +         L+D +P  +    SE    +     L IQ ++      D
Sbjct: 400 YS-DHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKD 458

Query: 446 VV 447
           VV
Sbjct: 459 VV 460


>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
 gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
          Length = 488

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 104/478 (21%), Positives = 179/478 (37%), Gaps = 54/478 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+    I  V    V+ I IDSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 3   AEELLSALPLKKIIGVLPDQVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +VV   ++       +I    V D   A  L             T+I +TG+ GKT+   
Sbjct: 63  IVVTERELPLGE---TIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFELG 168
           ++   +  + +  A  G+   ++              L+  +M              E+ 
Sbjct: 120 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
              L   R     V   IA+ T +   HL     +EE   AK  +F    + LEK   + 
Sbjct: 180 SHGLALGRL--AGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           LN DD++ E   A +       ++++G K++NADF+    +     +  +V++      V
Sbjct: 238 LNADDAWSERYAAMTP----FPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRV 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + +G     N+L  +         +++ I+ +    P +GR ++    L       I 
Sbjct: 294 KMNLLGEFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSELP----VQIF 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ AI       P+ +G+ I ++G     G   +S    +AE  S     +
Sbjct: 350 IDYAHTPDAIEKAIEA---AQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKAS--AAEY 401

Query: 404 VWLSGFHVLA------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+              D     +H +Y+                  GD+++   K 
Sbjct: 402 VILTTDDPRYEDYDSITGDLAKGMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKG 459


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 177/448 (39%), Gaps = 38/448 (8%)

Query: 32  IDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSLSIP 84
            DSR ++  +   FFAIKG  +DGH FI     KG    VV            +    + 
Sbjct: 15  TDSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVK 74

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              VD  +  L ++A   R +    +I ITGS GKT  KE L   L           SYN
Sbjct: 75  ALLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDKDFDIVKSPRSYN 134

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGV L++  M      GIFE G+S  GE++ L  +++P I V T I  +H   F    
Sbjct: 135 SQIGVALSVWEMSSRYQLGIFEAGISLPGEMKALQKIIQPTIGVFTNIGSSHSEGFESDR 194

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-----TIYSFGKSKNADFQ 259
           +    K ++F    K+ T+    D   +  ++ + +A  ++      I S+ K   AD +
Sbjct: 195 QKIREKLQLFV---KSETLIYCRD---YSEIEEEVNAFLLEQNPNLKIVSWSK---ADVE 245

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           ++  K            +G+  E     I     +N++  +     +  D D     +  
Sbjct: 246 VKDGKAY-------FLWKGEKYE--LPFIDAASVENLVHCILAALSVKEDWD-----VRR 291

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R      +    +ID++YN +   +K A+  +SQ        ++ +L DM 
Sbjct: 292 LRFLNPVEMRLELKEGREDNYIIDDTYNNDLGGLKMALQFMSQAHTLRG--KVLILSDMF 349

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + G   +S    + ++++   ++     G H       L   +   Y +    L      
Sbjct: 350 QTGLEGESLSRVMQDLIAPQGLNTFIGVGEHWKKYPIHLS-GVETQYYDDTKALLTSGAL 408

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   +++VK +    F +++  L++ 
Sbjct: 409 ERIKSSLILVKGARIFAFEKIVEKLIKR 436


>gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
          Length = 492

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 158/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  RDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVSFCSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
            +   HL     +E   + K+ +F          +N DD +   L  +         +YS
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLF-YWHDLQHAVINVDDEYGAELVGRLKKDCPDLVVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S+ AD ++  +   S+      +      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++G +         + D LP   +
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPN 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PERVEADRAAAIRYAVERAAASDIILIAGKG 464


>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
 gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
          Length = 483

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 172/481 (35%), Gaps = 58/481 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ ++  +        + G++IDSR I     F AI G   DGH FI  A++ G
Sbjct: 1   MKLNELLKNVEVLNTQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +       +    V      + ++          K  ++ +TG+ GKTT 
Sbjct: 61  ATAVLC--EKLPEEQDPKVTFVQVASTESCVGEVATQFYGDPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             + +  N+I             P+ L R+         ++   E
Sbjct: 119 ATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                + + R     ++    + T +   HL      E    AK   F+GLEK      N
Sbjct: 179 CSSHAIAQKRI--GGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDGLEKDAFAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++     A     + ++     ADF+ +  +   E  ++++  +    EV   
Sbjct: 237 ADDKNGMVMVQNCKA----NVKTYSTRTMADFKAKIIECHFEGMYLDINGK----EVGVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L   G   +L    +  +  +S      GR +       +G+  ++D  Y
Sbjct: 289 FIGKFNVSNLLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIHSP--EGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++  +G+G+ I V G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEV-LNGKGKVITVCGA---GGNRDKGKRPIMAQEAVKQS-DKVII 399

Query: 407 SGF------------HVLALKDALPRSIHVHYSETMDGLFLF--IQSSLVDGDVVVV--K 450
           +               +LA  D       V   +  + +     +      GDV+++  K
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAE---KGDVILIAGK 456

Query: 451 S 451
            
Sbjct: 457 G 457


>gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 481

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 179/469 (38%), Gaps = 45/469 (9%)

Query: 8   HDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +LL  +    +     +    G+  DSR I   + F A++G   DGH +I  A++ GA 
Sbjct: 2   EELLLGLDYEILQKGKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGAK 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+V+  +        +    V D+   L K+A       + K  II ITG+ GKTT+  
Sbjct: 62  GVLVSKKVEPEFP---VEYILVKDLRKNLGKIASNFYGYPQKKLKIIGITGTNGKTTSTY 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELG 168
           +L   L   K+  A IG+    IG  +  A                 +   +++ + E+ 
Sbjct: 119 LLESILG--KEKVARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKKAVEKGLEYLVMEVS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R    ++   +A  T +   HL     ++    AK ++F  L+ +    +N D
Sbjct: 177 SHALSLGR--VDMLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFTMLKDSKKSSINID 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + L  +         YS+  +K+AD      +  S+  ++ + L G+  E     +
Sbjct: 235 DIYGDRLYKEFGG------YSYSLTKSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLAIL 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N+L  +GI   L    +  ++ L       GR +   C    G   ++   Y  
Sbjct: 289 GRYNLYNVLGVIGIALQLGIGKNIILEKLKDIKGAPGRFELVNC----GQDYIVVVDYAH 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
              +++  +  ++++    +GR I V G   +     +    ++A+ LS   I    +  
Sbjct: 345 TGDALENILKSINELK---KGRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPR 401

Query: 406 LSGFH-VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               H ++          H    E  +   +         D++++  K 
Sbjct: 402 TENPHLIIEDVKKGMNGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKG 450


>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. Y412MC61]
 gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
 gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC61]
 gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
          Length = 489

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 104/482 (21%), Positives = 178/482 (36%), Gaps = 56/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR +AP   FF +KG   DGHDF   AV +G
Sbjct: 1   MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +     S+ +PV  V D   A+  L  A   R   +  +I +TG+ GKTTT
Sbjct: 61  AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             ++        K    IG+ +  +G     A                 +   V+F   E
Sbjct: 116 TSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R   H     +AV T +   HL     +EE  +AK  +F  L       + 
Sbjct: 176 VSSHALHQGR--VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN+DD   +  K  + A     I ++G  + +D    + +  +      +     S
Sbjct: 234 KFAVLNHDDPVSQYYKHMTAA----PIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGS 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G     N+L            ++T   AL+   P  G   R+        FT
Sbjct: 290 AAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPG---RFETVDEGQNFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++ A+  + Q++   +     V+G     G+  +S    +A+V   Y 
Sbjct: 347 IIVD-YAHTPDSLENALKTVRQLA---KRNVYVVIGC---GGDRDRSKRPLMAQVAVRYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV-- 449
              ++ S           +  ++  +   I  H      +    +      +GDVV++  
Sbjct: 400 DVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
 gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
          Length = 491

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 163/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L  L      +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L      ++ 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTPEYMRSTAA----TVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D + +  + +  E             ++    D++++  K 
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B]
          Length = 471

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 16/376 (4%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V ++  A   +    R +     + + GS GKTTTKEML   L +   T     + N
Sbjct: 86  VILVKNLNKAYEDIVQLYRKQFDIPFVQVIGSSGKTTTKEMLGSILRTKLNTLVSFENLN 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +  GV   L ++       + E GM   G I   T +++P   ++T I  AHL     +E
Sbjct: 146 SPSGVAYNLLKLTAKHQAAVLETGMRSKGVISRSTSIIQPDYVIVTCIHRAHLVTVGSLE 205

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            I  AK+E    L     + +N DD   + L    +      + +FG SK+ D   ++ +
Sbjct: 206 NIIKAKSEFIGFLSPESLVIINGDDENCKKLPLDQYQ---GKVLTFGMSKSCDIWAKEIQ 262

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   +   +   ++   + IG +   N L  + +   L        + L  F   +
Sbjct: 263 YDDFKMHFKACTRNLEIDCTINTIGIYNVLNALAAIILSLNLGFSKQEIQEGLLQF---K 319

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM----CE 380
               R +       F +I++++NANP S  A +  +   +       I VLGD      +
Sbjct: 320 PMYNRLQVVKRNKNFCIINDTFNANPDSTIALVEEIQNFAQGKP--IILVLGDFENPNYQ 377

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLF 436
             E  +S H ++ +  +   +  +   G    +L      +     +       +    F
Sbjct: 378 DTEYPESVHYEVGKKAASAMLYRLIAIGKWADSLIKGAVDNGYPIKNTGCFTKPEYAIDF 437

Query: 437 IQSSLVDGDVVVVKSS 452
           ++ S+V  ++++ KSS
Sbjct: 438 LKQSIVKNNIIIFKSS 453


>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
          Length = 490

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 177/486 (36%), Gaps = 61/486 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+  ++   +       ++GI  DSR +     F A++G   DGH +I  A++KG
Sbjct: 1   MELKELIHPLEVLEVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSI----PV-FGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117
           A  +V     V    ++ +    PV   V D   AL K   A          ++ +TG+ 
Sbjct: 61  AAAIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVD 161
           GKTT   +L      +      + +  N+I             P+TL  +         +
Sbjct: 121 GKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVDAGCE 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +   E+    + + R     +  +  + T +   HL     +E    AK + F+ L  + 
Sbjct: 181 YAFMEVSSHSIDQKRI--SGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPASA 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N DD    ++   + A       ++     ADF+ +  +   E + M V       
Sbjct: 239 FALTNADDKSGLVMLQNTAAKK----LTYSLRTLADFKGKILESHFEGTEMLVN----GR 290

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV+   +G   A N+L   G    L  D +  +  LS  H   GR +  +  L  G+  +
Sbjct: 291 EVMTRFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPL--GYTAI 348

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P ++   +S + ++   G GR I V+G      +  +      A  LS   I
Sbjct: 349 VD--YAHTPDALTNVLSGIHEV-LDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLI 405

Query: 402 -----------SHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                        +    ++G +   ++  L  +      +T   L          GDV+
Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLA-------RKGDVI 458

Query: 448 VV--KS 451
           +V  K 
Sbjct: 459 LVAGKG 464


>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
 gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
          Length = 482

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 156/462 (33%), Gaps = 54/462 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I  DSR +     F  +KG   D HDF   A             +      + 
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA-----AAQGAAAIVAERPIDVD 64

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +   +L         +   K  +I ITG+ GKTTT  ++   + +       I
Sbjct: 65  VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124

Query: 141 GSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  I              LTL +         VD  + E+    L   R   H    
Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR--VHGCDY 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAK 238
            +AV T +   HL     +EE   AK  +F  L       +     LN DD+  E     
Sbjct: 183 DVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A    T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L 
Sbjct: 243 TAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +    + T I  +       G   R+        +T+I + Y   P S++  + 
Sbjct: 299 ATAAGLVSGVKLQTIIAVIKELAGVPG---RFEVVDGGQNYTVIVD-YAHTPDSLENVLK 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
              Q +   +G    ++G     G+  ++    +A V + Y    ++ S         A+
Sbjct: 355 TAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAI 408

Query: 415 KDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            D + +    +  E             +++   D++++  K 
Sbjct: 409 LDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450


>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
 gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
 gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 152/395 (38%), Gaps = 29/395 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V+GI+ DSR +     F A  G H DG D+I  A+ KGA  V+ ++          + 
Sbjct: 384 APVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDSQGFDWKPEWQVH 443

Query: 85  VFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              + D+   +  +          +   + +TG+ GKTT    L  A   +++  A IG+
Sbjct: 444 NIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAVIGT 503

Query: 143 YN-----------NHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        N    P+ L +M       DV     E+    L + R   + V   +
Sbjct: 504 LGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGR--VNGVAFDV 561

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I   HL     +E   +AK ++F+    +    +N DD F   L       G K 
Sbjct: 562 AVLTNITRDHLDYHLTMEAYQAAKRKLFDWQTLS-AAVVNADDPFGLALIEDLRKQG-KK 619

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + S+G    AD         +    ++V+    + ++  H +G     N L  L  + + 
Sbjct: 620 VLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCLLVN 679

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A++A+S   P  GR + +      G   L+   Y   P +++ A+  L   +  
Sbjct: 680 EVALPAALQAVSGLVPVAGRMQMF----GGGDLPLVVVDYAHTPDALEKALHTLRSQA-- 733

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             G+   V G   +     +S    +A+ L+   I
Sbjct: 734 -RGKLACVFGCGGDRDSGKRSEMGRIADELADSVI 767


>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S          + D +      +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +   +  +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKG 459


>gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae Cit 7]
          Length = 487

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F AI G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDTFGRELTGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+       W++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGAWVTDDNPRSESPASIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   V + E        + +S    DVVV+  K 
Sbjct: 418 PGFAAVDKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 487

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 161/475 (33%), Gaps = 44/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL  +   +   V    +  +  DSR +     F AI G   +GH++I  A + 
Sbjct: 1   MTNLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +V           +S  V        AL           K T++ +TG+ GKTT  
Sbjct: 61  GATAIVCEQLPQLLFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIA 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGI--FELGM 169
            +L        +    + +   ++      A             + + V  G+    + +
Sbjct: 121 TLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYCFMEV 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +  T  +     + T +   HL            K   F+ L  T    +N DD
Sbjct: 181 SSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPSTAFALVNIDD 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +   + A       ++    +AD++    +   +   + +       EV    IG
Sbjct: 241 KNGAFMLQNTKAQKK----TYALKTHADYKAHIIESRFDGLLLRIN----QHEVWTKLIG 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L   G  ++L  D   A+  +S   P  G   R++ A++      I + Y   
Sbjct: 293 EFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAG---RFQYAVSATGVITIVD-YAHT 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P +++  +  ++ I  H E     V+G      +  +    D+A  LS     +V L+  
Sbjct: 349 PDALENVLKTINDIRTHNET-LTTVVGCGGNRDKGKRPIMADIATTLS----DNVILTSD 403

Query: 409 ----FHVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVDGDVVVV--KS 451
                   A+   + + +   +   +            +  +   GD+V++  K 
Sbjct: 404 NPRNEEPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIAGKG 458


>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 494

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/477 (22%), Positives = 177/477 (37%), Gaps = 53/477 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I G +     Q  + G  +DSR + P + +  I G H DGHDF   AV+ GA
Sbjct: 9   TLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKAGA 68

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
             + V   +      L +P   V ++     K+A A       K  +I +TG+ GKTT  
Sbjct: 69  AALAVERYLP-----LDVPQIKVRNIRQTAGKIAAAVFGYPSQKLELIGVTGTNGKTTVT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFEL 167
            ++        K    IG+  + I                +   L +M  + V+  + E+
Sbjct: 124 HLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVMEV 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIF 224
               L   R +    R   A+ T +   HL     +EE  +AK  +F  +   +      
Sbjct: 184 SSHALDLGRIV--GCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQMSGEKPGQKAI 241

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD   E L  K+       + ++G  K AD+Q  K     +  + ++  +    +V 
Sbjct: 242 LNADDQASEYLMTKTSC----RVVTYGIEKKADYQAEKIVLSDKGIYFDLVYKKIREKVF 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+L           + +   KAL       GR +  R    Q F  +ID 
Sbjct: 298 FATPGKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIR--KGQPFLVIID- 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++  +S   +I+     R I V G     G+  +     +AE  S ++  +V
Sbjct: 355 -YAHTPDGLENVLSTAREIT---GRRLITVFGC---GGDRDRGKRPLMAEAASGWS-DYV 406

Query: 405 WLSGFHVLA------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
            ++  +         + D LP    V Y   +D         +   +GD V++  K 
Sbjct: 407 IVTSDNPRTEDPEKIIGDILPGMGKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKG 463


>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 483

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/476 (21%), Positives = 181/476 (38%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   I    +  + G++IDSR +     F A++G   DGH +I  A++KG
Sbjct: 1   MVLSELLKAIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + V       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AVAVLC--EDVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVDVDFGIFEL 167
             +L             I +  N+I                  L L +M       +F  
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQMADSGCKYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH  + + ++ L R    + T +   HL     +E    AK + F+ + K      N 
Sbjct: 179 VSSHSIDQKRISGL-RFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNL 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+  H 
Sbjct: 238 DDKNGLVMTQNTRS----KVYTYSLRSLSDFKGKILESHFEGMLLDFN----NHELAVHF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  + ALS   P  GR    R    +G   ++D  Y 
Sbjct: 290 IGRFNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVRSP--KGITAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S
Sbjct: 346 HTPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 408 G-FHVLALKDALPRSIHVHYSETMDGLF------LFIQSSL---VDGDVVVV--KS 451
                   +D +   +     E M            I+++      GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKG 457


>gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
 gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
          Length = 486

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 165/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I   +        +  +  DSR +     F AI G   +GH++I  A + G
Sbjct: 1   MNLKTLLKNISIKASLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +V   + +  +    +    V +   AL             K T++ +TG+ GKTT 
Sbjct: 61  ATAIVC--EQLPQLLFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGI--FELG 168
             +L        +    + +   +I      A             + + V+ G+    + 
Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G  +  T  ++    + T +   HL            K   F+ L  T    +N D
Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++     +D++    +   +   + +       EV    I
Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTYSDYKAYIIESRFDGLLLRIN----QHEVWTKLI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L      ++L  D   A+  +S   P  G   R++ A++      I + Y  
Sbjct: 291 GEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAG---RFQYAVSVTGVITIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  ++ I  H E     V+G      +  +    D+A  LS     +V L+ 
Sbjct: 347 TPDALENVLKTINDIRTHNET-LTTVVGCGGNRDKGKRPIMADIATTLS----DNVILTS 401

Query: 409 -----FHVLALKDALPRSI---HVHYSETMDG---LFLFIQSSLVDGDVVVV--KS 451
                     +   + + +   H H  +T+         +  +   GD++++  K 
Sbjct: 402 DNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKG 457


>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 482

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 156/462 (33%), Gaps = 54/462 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I  DSR +     F  +KG   D HDF   A             +      + 
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA-----AAQGAAAIVAERPIDVD 64

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +   +L         +   K  +I ITG+ GKTTT  ++   + +       I
Sbjct: 65  VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124

Query: 141 GSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  I              LTL +         VD  + E+    L   R   H    
Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR--VHGCDY 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAK 238
            +AV T +   HL     +EE   AK  +F  L       +     LN DD+  E     
Sbjct: 183 DVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A    T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L 
Sbjct: 243 TAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +    + T I  +       G   R+        +T+I + Y   P S++  + 
Sbjct: 299 ATAAGLVSGVKLQTIIAVIKELAGVPG---RFEVVDGGQNYTVIVD-YAHTPDSLENVLK 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
              Q +   +G    ++G     G+  ++    +A V + Y    ++ S         A+
Sbjct: 355 TAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAI 408

Query: 415 KDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            D + +    +  E             +++   D++++  K 
Sbjct: 409 LDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450


>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
 gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
          Length = 482

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 98/481 (20%), Positives = 183/481 (38%), Gaps = 58/481 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   I    +  + G++IDSR +A    F A++G   DGH +I  A++KG
Sbjct: 1   MKLSELLKAIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +    +  +    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AIAVLC--EDMPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L             I +  N+I             P+TL R+  +       +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ + K      N
Sbjct: 179 VSSHSIAQQRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D  Y
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSIRSP--KGITAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V +
Sbjct: 345 AHTPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKESARLS-DRVII 399

Query: 407 SGFHVLAL--------------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +  +                  KD L ++I +                   GDV++V  K
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDLQKTISI---ADRKEAIKTACMLAQPGDVILVAGK 456

Query: 451 S 451
            
Sbjct: 457 G 457


>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
 gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALNLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 487

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 164/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSELPASIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   V + E        + +S    DVVV+  K 
Sbjct: 418 PGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKG 455


>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
          Length = 495

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 173/488 (35%), Gaps = 63/488 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +++   I    +       + G++ DSRS+ P   FF + G   DGHDF   A   G
Sbjct: 1   MTLNEIANWILAAKLEGDGNVQITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +VV   +      ++IP   V D   A+  +          K  +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----DVAIPQLIVKDSRLAMAIISDRYYDHPSQKLRLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFE 166
             ++   LS   ++   IG+                   + +   LA M    VD    E
Sbjct: 116 TYLIERILSDAGQSAGVIGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCAME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R  T   R  I V T +   HL     +E+ A+AK+ +F  L         
Sbjct: 176 VSSHALDQGR--TWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEA 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     LN DDS  +L    +       I ++G  + AD +    +  S  +   ++   
Sbjct: 234 ERSYAVLNADDSASDLFANAAAV----EILTYGIDREADVRASDIRITSRGTTFRLETFR 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++    +G     N L    +  +    ++   ++L       G   R         
Sbjct: 290 GGADISIRMVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPG---RVESVDAGQP 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           + +I + Y   P  ++   +VL  +    EGR I V G     G+  ++    +  + + 
Sbjct: 347 YAVIVD-YAHTPDGLE---NVLRTVKEFVEGRIICVFGC---GGDRDRTKRPIMGRIAAK 399

Query: 399 YNISHVWLSG------FHVLAL-------KDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           Y    V  S        H + L        D +P S      E               GD
Sbjct: 400 YADICVITSDNPRSENPHAILLDVEEGLKADGIP-SNRYLLIEDRRHAIEKAVEMASPGD 458

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 459 VVLIAGKG 466


>gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 500

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/488 (21%), Positives = 180/488 (36%), Gaps = 57/488 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ +            +N IS DSR I   + F A+ G   DGH F+  A+  G
Sbjct: 1   MLISKILENVSAKK-SYSKDIDINNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNG 59

Query: 65  AGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           A  VVVN  +D+        I V  V+D   AL ++A     R      ++ ITG+ GKT
Sbjct: 60  AVAVVVNSSSDVPCLAKYPDIQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGI 164
           TT  +L      +      I +  N+I              L   R+  D      D+  
Sbjct: 120 TTATLLYKLFLGMGFGAGLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCF 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+      + R     +    AV T +   HL     ++    AK   F+ L +T    
Sbjct: 180 MEVSSHATVQQRI--AGLTFRGAVFTNLTQDHLDYHKTMDNYRDAKKLFFDHLPQTAFAL 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GK 279
            N DD     +   + A      Y++     ADF+ +  +   E   ++++        +
Sbjct: 238 TNADDRNGNFMLQNTKAQR----YTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKE 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSIL----TADVDTAIKALSVFHPKEGRGKRYRCALN 335
             EV    +G   AQN+    G  ++L      D  T +  LS   P  GR +  R A  
Sbjct: 294 RYEVSTPFVGSFNAQNLTAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMA-- 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G   ++D  Y   P ++K  +S ++ +    + R + V+G     G+  ++    +A+ 
Sbjct: 352 -GISAIVD--YAHTPDALKNVLSTINDVK-SPDSRVVTVVGC---GGDRDKTKRPIMAQE 404

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGD 445
            +  + + V  S         ++ D + + +  +  E                     GD
Sbjct: 405 AAAQSDTLVLTSDNPRTEDPQSILDDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGD 464

Query: 446 VVVV--KS 451
           +V+V  K 
Sbjct: 465 IVLVAGKG 472


>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 491

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
 gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
          Length = 491

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 162/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T  +M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L      ++ 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D + +  + +  E             ++    D++++  K 
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 496

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/419 (22%), Positives = 149/419 (35%), Gaps = 39/419 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   + G  I    Q  +  I  DSR       F  I G H D H FI    + GA 
Sbjct: 5   LEELAALLPGARIVGDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGAR 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            V+     V       + V  V ++  AL+ +             ++ ITG+ GKTTT  
Sbjct: 65  AVLTERASVDVPAG--VAVLYVLNLEKALDTIVPFFYDYPARVMRVVGITGTNGKTTTSY 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELG 168
           ++   L         IG+    I                +   LA M    +D  + E+ 
Sbjct: 123 LVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKTGTI 223
              L   R     +    AV T +   HL     +E  A AKA +FE     G ++  T 
Sbjct: 183 SHALALGR--VAGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+  E ++A +       I ++G    AD   +  +   +   + +   GK +  
Sbjct: 241 VLNADDAASETMRAYTRC----PIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFH 296

Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +H GI G     N+L  +G              AL+ F    GR +  R    Q F  ++
Sbjct: 297 LHTGITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELVR--EGQDFAVIV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           D  Y   P  M+   +VL       +G  IAV G   +     +     +   ++   I
Sbjct: 355 D--YAHTPDGME---NVLRTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAI 408


>gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
 gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
          Length = 522

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 174/475 (36%), Gaps = 50/475 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            DLL      +    P    + G++ DSR++ P   F AI+G   DGH FI  AV  GA 
Sbjct: 42  ADLLDETIAGAEAPDPDTLAIGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGAR 101

Query: 67  LVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
           LVV       +       VF  V D   AL + A A       +  ++ +TG+ GKTT  
Sbjct: 102 LVVCEALPTRARERFPGVVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVA 161

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFEL 167
            ++   L ++ +T   + +                   + +  TL RM          E+
Sbjct: 162 YLVHHLLEALGETAGLLSTIEVRAGGETTAPALTTPGPLVLHRTLRRMVDRGCTACAMEV 221

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R   H +   +A+ TT++  HL     +++  +AK  +F+ L    T   N 
Sbjct: 222 SSHALDQDR--VHGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNT 279

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A + A     + SFG  ++AD +    +   +   + +       E     
Sbjct: 280 DDEAGPTMVADTEA----RVVSFGLDRDADIEATVLEARLDGQRVRLD----GHERDTQL 331

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A NM    G  + L    +    AL+   P  GR +  R     G   +ID  Y 
Sbjct: 332 AGRFNASNMAAAYGTGTALGHVPEAVADALADAPPVPGRVEPLR--FEDGTTVIID--YA 387

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +   +P        V G   +     +     +AE L+      V ++
Sbjct: 388 HTPDALENVLRTVRDTTPAKAA-LWCVFGCGGDRDAGKRPTMGRIAERLA----DRVIVT 442

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            ++D + R   + +    +          + GDVVV+  K 
Sbjct: 443 SDNPRTEAPVAILRDIRDGVERPESMRWIVDREEAIQAAADETMPGDVVVIAGKG 497


>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 485

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 181/477 (37%), Gaps = 58/477 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    +++       +    +  ++ I+ DSR +     F AIKG   DGHDFI  A+  
Sbjct: 7   LKNLSEIV------DVKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA +V+   ++        +    V +   AL++ +     +   +  +I +TG+ GKTT
Sbjct: 61  GAVVVIGEKEINLPED---VLYIKVKNSRKALSEASSLFFGKPAERLNVIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
           T  ++   L     +   +G+    I   L  A                     V++   
Sbjct: 118 TTYLIKAILDEAGYSTGVVGTIGIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVTM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   R     V+  + V T +   HL      E+  ++K ++F+   K     +
Sbjct: 178 EVSSHSLKLHR--VDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLFDLSRK---AVI 232

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E L ++ +      + ++   KNAD +       S+    EV   G+  ++ +
Sbjct: 233 NVDDESGERLCSELNI----PVITYAIEKNADVRAENVVIGSDGVSYEVCAGGERRKITY 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +     L  D++T  KAL       G   R+        FT+I + 
Sbjct: 289 KVPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPG---RFEPVDEGQDFTVIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  ++ +   +    GR I V G     G+  +     + +V+S  +   + 
Sbjct: 345 YAHTPDGLENVLNTVKTFA---RGRIITVFGA---GGDRDRGKRPLMGKVVSERSDYFII 398

Query: 406 LSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S         A+ D + + +     +    +  + +   I+ +L  GDVV++  K 
Sbjct: 399 TSDNPRTEDPQAIIDDIEKGVTERSNYEKIIDRREAIRRAIEMAL-PGDVVLIAGKG 454


>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
 gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
          Length = 491

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 159/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V+   IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVMMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi]
          Length = 397

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 181/408 (44%), Gaps = 20/408 (4%)

Query: 64  GAGLVVVNTDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           G      + +  +        +  +      +V+  L  LA     ++    IAITGS G
Sbjct: 3   GVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNG 62

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEML   LS   KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L
Sbjct: 63  KTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLL 122

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +++P I +IT I+ AH+  F  ++ IA  K++I    +      +N  + +   L+ +
Sbjct: 123 SQILKPEIVIITNISYAHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKR 180

Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  A     I  F         ++ +     +   +   +G   E     +G H   N +
Sbjct: 181 AKIANPNVKIVYFDFEN---LSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAI 235

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L        + L     ++GR +     L +  + ++++SYN N  S  A  
Sbjct: 236 GCINLALFLGMREKEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALK 291

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +++  +  + + ++  VLG   E+GEL+   H DL +     N   ++L G   L ++D+
Sbjct: 292 NMI--LDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDS 349

Query: 418 LPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +Y    D    F   SL     +V+K S      R++N +
Sbjct: 350 ENLVEKCLYYFSEFDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 397


>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
 gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
          Length = 486

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 175/474 (36%), Gaps = 44/474 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L++A Q   +       V+ ++ DSR IAP + FFA+ G   DGH +I  AV  
Sbjct: 1   MKQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV          S+   V    +   A    A       +  ++ ITG+ GKTTT 
Sbjct: 61  GAAAVVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNGKTTTV 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARM-PVDVDFGIFEL 167
            +L      +      I +    I                    +ARM     ++   E+
Sbjct: 121 TLLYDLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEYCFMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +  ++     +     + + I   HL       E   AK   F+ L K     +N 
Sbjct: 181 SSHAI--VQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAKKLFFDNLPKEAFALINI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    T+ +      ADF+ +  +   +   ME+++ G+  EV  H 
Sbjct: 239 DDRNGRVMVQNTRA----TVKTLSLQSMADFRCKILETHPDG--MELRIDGR--EVWVHF 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L       +L AD +  ++ +S  HP  GR +  R A      T I + Y 
Sbjct: 291 LGRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAA---DGTTAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  + +I     G+++ VL      G+  ++   ++A++   Y  + +  S
Sbjct: 347 HTPDALEKVLQTVEEIR--RPGQQLFVL--CGCGGDRDKTKRPEMAQIAVKYATTAILTS 402

Query: 408 G----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D     L                         GD++++  K 
Sbjct: 403 DNPRHEDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKG 456


>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 481

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 170/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +L+ ++  S+    +  + G+ IDSR +  +  F AIKG   DGH FI  AV +G
Sbjct: 1   MTLSSILKNVKPLSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQG 60

Query: 65  AGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+  T       G   + V   +D +G +  +        K  ++ +TG+ GKTT  
Sbjct: 61  ATAVLCETMPTQLPQGVTFVQVESTEDAVGPVATMF-YGEPSKKLKLVGVTGTNGKTTIA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELG 168
            +L             + +  N+I                    L RM       +F   
Sbjct: 120 TLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMEC 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH    + +  L      V + +   HL      E   +AK   F+ L K      N D
Sbjct: 180 SSHAIAQKRIGGLT-FAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     + ++     ADF+ +  +   E  ++E+       EV    I
Sbjct: 239 DKNGMVMVQNTRAA----VKTYSTRSMADFKAKILECHFEGMYLEIN----GAEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L       +L    +  +  +S  H   GR +    +  +G+  ++D  Y  
Sbjct: 291 GKFNVSNLLAVYATAVMLGKRPEDILLVMSTLHSVNGRLQP--LSSPEGYTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  ++ + ++  +G+G+ I V G     G         L  V ++     V ++ 
Sbjct: 347 TPDALENVLNAIHEV-LNGKGKVITVCG----AGGNRDKGKRPLMAVEAVKQSDRVIITS 401

Query: 409 FHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L      +   V                   GDVV+V  K 
Sbjct: 402 DNPRFEDPQAIINDMLAGLNAQQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKG 457


>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 491

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +   +  +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 486

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 160/452 (35%), Gaps = 36/452 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+  + G+ IDSR     + +F ++G  +DGH+FI   ++KG   +V +          
Sbjct: 10  APEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSK--PVDDMKK 67

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--Y 137
            +    V++V   LN++A         K  +  +TG+ GK+T   ++    S        
Sbjct: 68  GVAYIQVENVNRTLNRVASMFYGHPSRKMKVFGVTGTNGKSTITSIIRDVYSHFAPCGYI 127

Query: 138 ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             I      + +P +L            +  V+       L +S  G        V   +
Sbjct: 128 GTISISYGEVTLPPSLTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRVQSVDFDV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV + +   HL     IE    AK ++F  L+K G   LN DD++ + L   + A    +
Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKEGVAVLNADDAYVDQLADATEA----S 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G   +A +Q    +     S   +    +  EV  + +  +   N+L  +  ++  
Sbjct: 244 VVTYGIDNHATYQAENIRIEKTGSRFTLVHGTERYEVSTNLVALYNIYNLLGAVAAMAES 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  +  L      EGR +R     ++G    +   +   P  M+        I+  
Sbjct: 304 GIPIEQQLPYLHDIRQIEGRMERI----DEGQLFNVIVDFAHTPDGMEKVFEYAKDITED 359

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRSI 422
           G    IAV G     G+          E+ S Y  S +             + + +   I
Sbjct: 360 GHS-IIAVFGS---AGKRDTKKRRVFGEIASRYCDSIILTEDDPRDEDPREIANEIKSGI 415

Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVVKS 451
                 +             S    D V++  
Sbjct: 416 SDTNNIFIADRYAAIRQAIESANVKDTVLILG 447


>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
 gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
          Length = 491

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 163/481 (33%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S        G  +  +      + +    +  + ++  I S+    D++++  K
Sbjct: 400 THAIYTSDNPRSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAI-SNAKAEDIIIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
 gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
          Length = 496

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 111/484 (22%), Positives = 176/484 (36%), Gaps = 55/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I       +  I  DSR  A    F  I G H D H FI +A + 
Sbjct: 2   MKRLEELADLVPGARIAGDKCTEITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA  V+   D VA      I V  V D+  AL+ +             +I ITG+ GKTT
Sbjct: 62  GARAVLTERDKVAVPPG--ISVLHVPDLQEALDLIVPYFYDYPARAMRVIGITGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIF 165
           T  ++   L    +    IG+                   I +   LA M    +D  + 
Sbjct: 120 TSYLVRAMLRHAGRRVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKT 220
           E+    L + R     +    AV T +   HL     +E  A AKA +F+     G+++ 
Sbjct: 180 EVSSHALDQGR--VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEG 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  LN DD+  ++++A +H      + ++G    A    RK +   +   + +   G  
Sbjct: 238 KTAILNADDAAAKMMRAHTHC----PLITYGVDMPAALTARKIRLGQDGMELTIAYAGAE 293

Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  V  GI G     N+L   G              AL+ F    GR +  R    Q F 
Sbjct: 294 LPAVQTGITGLFNVYNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELVRA--GQDFS 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P  M+   +VL        GR I V G     G+  ++    +  + +  
Sbjct: 352 VIVD--YAHTPDGME---NVLRTARAVTTGRIITVFGC---GGDRDRTKRPIMGRIAAEL 403

Query: 400 NISHVWLSG----FHVLALKD--------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               V  S         A+ D        A+    +    +    +F  +Q++   GD V
Sbjct: 404 GDVIVLTSDNPRTEDPAAILDEVEAGVLPAIGGKPYEKLVDRRTAIFHAVQTA-RAGDTV 462

Query: 448 VVKS 451
           V+  
Sbjct: 463 VILG 466


>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
 gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
          Length = 491

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 493

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 103/469 (21%), Positives = 173/469 (36%), Gaps = 58/469 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G V    +  + +DSR I    AF  I G   DGHD++  AV+ GA  +  +  ++   G
Sbjct: 17  GEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAIFTSKPLMKEYG 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V+D   AL  LAV           +I +TG+ GKTT   +L       +K  
Sbjct: 77  ---VPIIQVEDTNRALAMLAVKYYDYPTKHFPLIGVTGTNGKTTVTYLLDKIFEYHQKKA 133

Query: 138 ACIGSYNNHI------GVPLTLARM----------PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    I       V  T   +            DV  GI E+    L   R   + 
Sbjct: 134 GVIGTIQVKIGEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGR--VYG 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELL 235
               IAV T ++  HL     I++   AK+ +F  L      EK     +N DDS   LL
Sbjct: 192 CDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAIINDDDSSSHLL 251

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           K  +     + + ++   K A    +  +  +     ++     ++ +    +G     N
Sbjct: 252 KRSTA----QHVITYSCKKEATIMAKDIELTASGIRFKLHSPLGNITIQSRLMGMFNVYN 307

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ML            ++   +AL       GR +       Q +  ++D  +   P S++ 
Sbjct: 308 MLAASAAAIASKVPLNVIQQALESIEGVNGRFEP--IVEGQNYSVIVD--FAHTPDSLEN 363

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------- 408
            +  +   +   +     V+G     G+  +     +AEV   Y    V+ S        
Sbjct: 364 VLQTIKDFA---KRNVYVVVGC---GGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDP 417

Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + A  DA   S  V   +  +G+   IQS+    D+V++  K 
Sbjct: 418 QAILDDMTAELDANSGSYEV-VVDRKEGIAKAIQSA-QKDDIVLIAGKG 464


>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
 gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
          Length = 491

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 163/467 (34%), Gaps = 52/467 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +G +    ++ I  DSR +     F  + G H DGH F + AV+ GA  ++   + +  
Sbjct: 20  IVGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVAAVKSGAAALLC--EHIPD 77

Query: 78  IGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +P+    D   AL  +A           +++ +TG+ GK+TT  M+   +    K
Sbjct: 78  GVKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGVTGTNGKSTTTYMIRSIMRGRGK 137

Query: 136 TYACIGSYNNHI---------------GVPLTLARMPVDVDFG-IFELGMSHLGEIRFLT 179
               +G+                     +   L+ M      G + E     L + R   
Sbjct: 138 V-GLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRSSCNGCVMETSSHGLAQGRLSG 196

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAK 238
            L    +AV T + P HL     +E     K  +F + ++       N DD + + L  +
Sbjct: 197 CL--FDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKYNCKKIFNVDDPYGKRLLRE 254

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               G   +    KS +A              + ++ ++G+   V    IG +   N L 
Sbjct: 255 C--SGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVNRVRLPLIGRYNVSNALA 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +    D   + L       GR +RY               Y   P ++   +S
Sbjct: 313 AAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAIV----DYAHTPDALSNLLS 368

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
              +I    +GR I V G   E    ++    ++A         H+ L+     G   L+
Sbjct: 369 AAREI---CKGRLIGVFGLGGERFRGNRWAMGEIA----AQKADHLVLTMDNPRGEDPLS 421

Query: 414 LKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVVV--KS 451
           + + +   +H           +  D ++  +  S  +GDVVV+  K 
Sbjct: 422 IVEDILEGVHKVDGNSYDVIIDRKDAIYRALDMS-REGDVVVISGKG 467


>gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
 gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
          Length = 483

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 99/459 (21%), Positives = 182/459 (39%), Gaps = 40/459 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               I     +  I  DSR + P   FF I+G   DGH +I  A+ +GA ++V + +++ 
Sbjct: 6   ELYDIDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHSKELL- 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V++ L  LN+++        +K  II +TGS GKT    M+  A+S   
Sbjct: 65  -EKKNGIIYILVENTLEELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYC 123

Query: 135 KTYACIGSYNNHIGV-----------PLTLARMPVDVDFG---IFELGMSHLGEIRFLTH 180
            T   IG+ +                 L L R    ++ G   +  +  S  G       
Sbjct: 124 NT-GYIGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVD 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V   +AV+T I   HL      E+   AK ++FE ++ +G + LN DD  F  +K  + 
Sbjct: 183 SVNFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKPSGWVVLNSDDENFLRIKNSTK 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I ++G +  +D   + ++   + S  ++  +G +  V    +      N+L  +
Sbjct: 243 G----KILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALV 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  +  D    ++A+    P EGR +  +    Q F  +ID  Y  +  + +     +
Sbjct: 299 CTLIAMGCDEKMVLQAVKEVKPVEGRMELIKAK--QNFSVIID--YCQHINNYEQIFEFV 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALK 415
             +    +GR IAVLG     G+ +     ++ +V + Y + HV L+     G +V  + 
Sbjct: 355 DSVR-QNKGRLIAVLGAP---GKRNYKMRREIGKVANKY-LDHVILTQLDDRGENVYDIC 409

Query: 416 DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +      I      +               D++++  
Sbjct: 410 KTIQAEIVDISSVIIPSRQVAIEQAIEIACKDDIILILG 448


>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 481

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 182/478 (38%), Gaps = 55/478 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ ++           ++ I  DSR       F AIKG   DGH ++ +A++ G
Sbjct: 1   MELKKILENVEYELQQGDINRDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A ++VV+  +  +    +I V  V D    +  +          +  ++ +TG+ GKT+T
Sbjct: 61  ARVIVVSDAVFVAA---NIAVVRVKDTRAVMAAIAGNFYGHPSKELALVGVTGTNGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             +L   L + +K    IG+  N IG  +                       DVD  I E
Sbjct: 118 TFLLAEILEAYRKKIGVIGTIENRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  +          I V T +   HL     ++  A+AKA++F   +      +N
Sbjct: 178 VSSHAL--VLNRVDGCDFDIGVFTNLTQDHLDFHETMDNYAAAKAKLFSMCK---ISIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D  + +++     A       ++G    A F  +     + ++   ++  GK +++V  
Sbjct: 233 VDSPYSKVMLDSCKA----ETITYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N +  +     L   +D    AL       GR + ++    +G+  L+D  Y
Sbjct: 289 IPGEFTVYNTMCAIICAYKLGVPLDFIAXALKNVKGVPGRVQSFQST--KGYSVLVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++ + Q +   +G  + V G     G+        + E+ S Y+ + V++
Sbjct: 345 AHTPDGLENVLTAIKQFA---KGDIVTVFGC---GGDRDNKKRPIMGEIASKYS-TKVYI 397

Query: 407 SGFHVLALK-DALPRSIHVHY----------SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  + + D + R I V            S+    +   + S     DV+++  K 
Sbjct: 398 TSDNPRSEEPDEIIRQIEVGAKKHITPYEIESDRKTAIIKAL-SFAKKDDVILIAGKG 454


>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
          Length = 499

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 105/510 (20%), Positives = 184/510 (36%), Gaps = 59/510 (11%)

Query: 4   LWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T  DL+  +    +  G  P   V+ ++ DSR      A+FA++G   DGH FI  A+
Sbjct: 1   MMTLEDLIGLLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFISDAL 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
            KG G+VV     V+           V D   AL   A        S   +I +TG+ GK
Sbjct: 61  SKGVGVVVCEEIPVSVDERCC--YIRVADCRTALAAAAAEWFGHPASSLRVIGVTGTNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFG 163
           TTT  ++   L         IG+    IG    +                  +    +  
Sbjct: 119 TTTARLIRTMLDRSGVKTGYIGTGQALIGDESIVLERTTPEAMDLHALFRKMVNCGCEAV 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L  +   T  +  + AV T + P HL   + ++E  SAK  +F  +   G  
Sbjct: 179 VMEVSSHAL--VLHRTEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQVAPDGFG 236

Query: 224 FLNYDDSFFELLKAKSHA--LGIKTIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            +N DD++  ++        L   T+ S  FG +  +  + R  +   + S + VQ+ G+
Sbjct: 237 IVNADDAWGSMMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSVTVQMNGR 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +        G     NML  L     +   ++TA  +++     EG   R     + G  
Sbjct: 297 ACRASFLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEG---RMEPVSDDGGL 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y   P +++  I  L+++ P  +   I V G   +     +     +A      
Sbjct: 354 FSAIVDYAHTPDALEKVIGALNEVRPA-DSSLIVVFGCGGDRDRSKRPLMGGIA----AA 408

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
              HV L+  +           A+   +     +  ++  D +   +Q  L  GD++++ 
Sbjct: 409 GADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQ-MLRPGDLLLIA 467

Query: 450 -KS-----------SNSCGFYRLINLLLEE 467
            K            S       +   L E 
Sbjct: 468 GKGHECYQESGGRKSYFSDREVVARALQER 497


>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
 gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
          Length = 487

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 179/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I+   I    +  V G++IDSR I     F A+KG   DGH +I  A++ G
Sbjct: 1   MKLQELLYDIKPIQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYIAKAIELG 60

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  +++       + G   I V   +D +G +              ++ +TG+ GKTT  
Sbjct: 61  ATAILLEDMPQQYTEGITYIQVESTEDSVGKVATAF-YGNPSHHLILVGVTGTNGKTTIA 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFEL 167
            +L      +      + +  N+I             P+ L  +  +      ++   E 
Sbjct: 120 TLLYNMFRRMGHKCGLLSTVCNYIEDKAVPADHTTPDPIELNALLSEMVKAGCEYAFMEC 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               + + R     ++   A+ T +   HL      E   +AK   F+GL K      N 
Sbjct: 180 SSHAIHQKRI--GGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    T+ ++     ADF  +  +   +   +EV  +    EV    
Sbjct: 238 DDKNGMIMVQNTKA----TVKTYSIRTLADFSAKILECHFDGMELEVNGK----EVNVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G   +L  D +  + ALS  H   GR + +      G+  ++D  Y 
Sbjct: 290 IGKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFHSP--NGYTAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  ++ + ++  +G+G  I V G     G   +     +A+     +   V ++
Sbjct: 346 HTPDALENVLNAIHEV-LNGKGHVITVCGA---GGNRDKGKRPLMAQEAVKQS-DKVIIT 400

Query: 408 GFHVLAL--KDALPRSIHVHYSETMDGLFLFIQS---------SLVDGDVVVV--KS 451
             +      +D +   +    ++ M  +   +               GDV+++  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVILIAGKG 457


>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
 gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
          Length = 487

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 170/475 (35%), Gaps = 49/475 (10%)

Query: 10  LLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L   + GH    +       V GI+ DSR +     F A+ G   DGH  +  AV++GA 
Sbjct: 3   LAALLAGHPHDLLQGDADTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V+T       +L+I       V  +L    +      +  +++ITG+ GKT+T  ML
Sbjct: 63  AALVSTTAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAAML 122

Query: 127 TIALSSIK----KTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELG 168
              ++++           G   + I VPL               + R   D   G   + 
Sbjct: 123 ESVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVVME 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S L   +         I V T ++P HL +   ++   +AK  +F G+       +N D
Sbjct: 183 ASSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGMSSD--AVVNTD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +  +     +    +FG  K ADF  R ++  +  +   +   G+         
Sbjct: 241 DPVSQEILER-----MPRATTFGMDKTADFTARAFEVSATGTRFLLVHDGQEYPAHLPIP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  + +   L  +   A+ AL       GR +  R    +   T I   Y  
Sbjct: 296 GRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLR----RADGTSIVVDYAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  S++  +  L ++S    GR + V G     G+   S  I +  +    +   V  S 
Sbjct: 352 SADSLEKTLRTLREVSS---GRLLTVFGC---GGDRDASKRIPMGSLAGHLSDHVVITSD 405

Query: 409 ----FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
                    + +A+ R +    +                S    GD V+V  K +
Sbjct: 406 NPRTEDPETIINAVERGVRTTDTPYDRITDRRAAIARALSLAEPGDTVLVAGKGA 460


>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 490

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 163/481 (33%), Gaps = 51/481 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       + +     V GI+ +S  +    AFFAIKG   DGH FI  A+ K
Sbjct: 1   MKELQDLL--TGEKVVNLGKSQVVKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGV---DDVLGALNKL--AVAARLRSKATIIAITGSVG 118
           GA  V +    +        P   +   ++   +L                +I ITG+ G
Sbjct: 59  GASTVFIQDTSIIDTLKRKYPYINIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGI 164
           KT+   +L     +       IG+ N  IG  +                  +  +    +
Sbjct: 119 KTSVSNLLAQYYENAGYKVGVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTG 221
               +S     +F  +    H  + T +   HL     +E    AK E F  ++      
Sbjct: 179 VVAEVSSHAAHQFRVYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKA 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD + + +             ++G     +F+++ +     ++   ++ +GK++
Sbjct: 239 IASVNIDDPYGKRIYNDFKEK--IDFITYGF--EGEFKIKDYNLSLFETLFNIEYKGKTL 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N+  ++  +     D+D          P  G   R+     + F  +
Sbjct: 295 NFKTKLRGLFNVYNLSASISFLIKDGFDIDFLKDKTLDLKPIRG---RFEVVEAKDFIVV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y   P +++  +  L+QI  +   R I V G         +     +A+  S    
Sbjct: 352 ID--YAHTPDALENILKSLNQIKQN---RVITVFGAGGNRDRTKRPLMGKVAQDFS---- 402

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V L+  +         +  + + + +   V           +   +   GD+V++  K
Sbjct: 403 DIVILTSDNPRFEDPNQIIKDILEGITQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGK 462

Query: 451 S 451
            
Sbjct: 463 G 463


>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
          Length = 491

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L  L      +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    +    E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis 8013]
          Length = 492

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  A+  GA  V  + D         ++P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELVGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 497

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 150/470 (31%), Gaps = 50/470 (10%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +   P   +  +  DSR + P   F A+ G + DGHDF   AVQ+GA  +VV   + 
Sbjct: 10  GQLLQGDPAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVA 69

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           A      + V   D    AL +LA         +  ++ +TG+ GKTTT  ++   L   
Sbjct: 70  APA---HVAVIRTDSTRAALGRLAAEFWRHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQ 126

Query: 134 KKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRF 177
                  G+ +  +      A +                     + + E     L   R 
Sbjct: 127 GHVVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAVMEASSQGLDMNR- 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFF 232
               V   + + T +   HL           AKA++F  L     +      LN DD   
Sbjct: 186 -VDDVEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPAS 244

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E  ++ +       +Y++G   +A  +    +     + + +      + V    +G   
Sbjct: 245 EYYRSVTEV----PVYTYGFRPDAMVRAADVELSPAGTRLRLCTPQGEVPVSLRLVGRFN 300

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L            +D    AL       GR +  R     G F      Y  +P S
Sbjct: 301 VYNALAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQPFGVFV----DYAHSPDS 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---------SH 403
           ++  +      +    GR I V G   +     +     +A  L+ + I           
Sbjct: 357 LENVLHTARGFT---RGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDP 413

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V +       L D L            +       +     DV+V+  K 
Sbjct: 414 VRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKG 463


>gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 517

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 150/363 (41%), Gaps = 20/363 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
                  +      ++ ITGS GKT+ K +    LS   +      S+N  +G+   +  
Sbjct: 155 QAKIKKYKEEEGLKVLGITGSFGKTSVKFISDTILSEGLRVKNTPSSFNTPMGLSKIINN 214

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D +  I ELG    GEI  +  LV+P I +IT I P H+  F  IE I   K E+ 
Sbjct: 215 ELERDREVFIAELGAKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKTKYELI 274

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWM 272
           E L + G    NYD+ + + L  K+     K  Y +G       D    + K     S  
Sbjct: 275 EDLPEDGIAIFNYDNDYVKPLADKTK----KKTYRYGTKDFDKLDVYADEIKVNETGSEF 330

Query: 273 EVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            + ++ G  ++     +G H   N+L       +L   ++   + +S   P E    R  
Sbjct: 331 VLHIKGGGEIKCSTRLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVE---HRLS 387

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +     +ID+++N+NP   +AA+ VL +   H   R+I +   M E+G++ +  +  
Sbjct: 388 LIPSSNNTIVIDDAFNSNPVGFRAALDVLREFKDH---RKIIITPGMVELGDMEEEENRK 444

Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + +V++   +    L G          LKD       ++   ++D     +    + GDV
Sbjct: 445 IGQVMADV-LDFAILVGKKRTLPIYEGLKDKNFDEEKIYRVSSLDEATKVLAKISMAGDV 503

Query: 447 VVV 449
           V+ 
Sbjct: 504 VLF 506


>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
 gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
          Length = 496

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 174/480 (36%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D++  I+G ++   P    +  ++IDSR+      F  + G H DGH +I  A   G
Sbjct: 4   TLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D+    G + I V    + +  L           K  +I ITG+ GKTTT  
Sbjct: 64  AEAVLVEKDVPPVPGLVMIRVKSTQETMTELA-PWFYDYPAQKMRMIGITGTNGKTTTTN 122

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELG 168
           +L   L++       IG+ N  I                +  TL RM     D+ + E+ 
Sbjct: 123 ILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIF 224
              L   R     +    A +T I   HL     +E    AKA +F  L    +K  T  
Sbjct: 183 SHALALNR--VAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKTAI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD+   L+  +        + ++GK++  D    ++   ++   + +     +M++ 
Sbjct: 241 FNMDDASSPLIMNRVKT----KVMTYGKARTNDVYPIRFHVGAKHMELSLHTPEGNMDLR 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G     N++  +          D  ++ L  F    G   R++       FT+I +
Sbjct: 297 LHITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPG---RFQLIDAGQPFTVIVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  +   +    QI+   +GR  AV G     G+        + ++        V
Sbjct: 354 -YAHTPDGLDNVLRTARQIT---KGRLWAVFGC---GGDRDAKKRPIMGKLALELADILV 406

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMD-----------GLFLFIQSSLVDGDVVVV--KS 451
             S        D + R I   +S+                  F  S     DV+++  K 
Sbjct: 407 VTSDNPRSEDPDTIIRDIETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKG 466


>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 484

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 171/482 (35%), Gaps = 56/482 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +F  L  A++   +          I IDSR +   + F A+ G   DG  FI  A
Sbjct: 1   MKSTLSFDALAAAVRAGLL---------NIRIDSRKVRQGDVFVALPGSSVDGGAFIADA 51

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVG 118
           +++GA  V V       + +    V   +D   AL  LA A    +     ++ ITG+ G
Sbjct: 52  LERGASYV-VCRPCSVPVQTGGAAVVVAEDPRKALGLLAAARYDTADTGFPLVGITGTNG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDF 162
           KTT   +L     +       +G+ N         A M                   V+ 
Sbjct: 111 KTTCTYLLDHLFRTAGHVTGLLGTVNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEA 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTG 221
              E+    L + R      R   A++T +   HL     +E   SAK+ +F  L  +  
Sbjct: 171 AFMEVSSHALDQQR--VSGARFAAALLTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDK 228

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQG 278
              +N DD +   L  +   LG    YS   +   D    Q        +   + +  +G
Sbjct: 229 VCAVNADDPYGRRLLPQ---LGRGVGYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEG 285

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K+ E+    +G   A N+         +   V+ A++ L+ F    GR +R     ++G 
Sbjct: 286 KTWELRSPLVGAFNASNLAGVQAAGLAMGLPVE-AMQGLASFSGVPGRMERIE--NDKGL 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-------HID 391
              +D  Y   P +++   +VL  +   G  R IAV G   +     +         H D
Sbjct: 343 NVFVD--YAHTPDALE---NVLRALRAAGFARVIAVFGCGGDRDRTKRPLMGQAVCRHAD 397

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           +A + S    +   ++   +  +K  L +  HV                   GD V+V  
Sbjct: 398 VAVLTSDNPRTEDPVA--IMADVKPGLAQCDHVVEEPDRRKALAAAVEMARPGDAVLVAG 455

Query: 450 KS 451
           K 
Sbjct: 456 KG 457


>gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
 gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
          Length = 487

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 167/477 (35%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +   ++       VN I  DSR +   + F A+KG   DGH +I  A+  
Sbjct: 1   MKLLKDILYGVGIVAVNGTTDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++  T  V  +  ++       +   A+              ++ +TG+ GKTT  
Sbjct: 61  GANAIICETMPVNLVNGITYVQVKNGNAALAIMASNFYGTPSKNLKLVGVTGTNGKTTIS 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFEL 167
            +L             + +    I                +  +LA M    V+F   E+
Sbjct: 121 SLLYQLFKKAGYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFCFMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               + + R     +    A+ T ++  HL       E    K  +F+GL KT     N 
Sbjct: 181 SSHGIHQKRI--EGLVFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDGLPKTAWALTNI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A       ++     ADF+ +  +       +++       E+    
Sbjct: 239 DDKNGAVMLQNTKAKKQ----TYALKTYADFRAQILENQFSGQLLKID----DNELWSKL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A NML       +L  +    ++ LS     +G   R++  ++    T I + Y 
Sbjct: 291 IGDFNAYNMLAIYATAQLLGLEKMEILRLLSELENVDG---RFQYYISGKNITAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  ++ ++ +    E   I V+G     G+  +S    +  + S  +   V+ S
Sbjct: 347 HTPDALKNVLNTINALRTGNED-VITVVGC---GGDRDKSKRPVMGHIASEMSTKVVFTS 402

Query: 408 G-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         V A  +A   +  V   E  +             D++++  K 
Sbjct: 403 DNPRTESPSEILKEVEAGVEA-QNTRKVLTIENREQAIKTACQLAQPKDIILIAGKG 458


>gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis 961-5945]
 gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis G2136]
          Length = 492

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 162/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 482

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 182/477 (38%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ IQ   +    +  + G++IDSR +A    F A++G   DGH +I  A++KG
Sbjct: 1   MKLSELLKTIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +    + +I    V D   A+ K+A A      SK  ++ +TG+ GKTT 
Sbjct: 61  AIAVLC--EDMPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L             I +  N+I             P+TL R+  +       +   E
Sbjct: 119 ATLLYNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ + K      N
Sbjct: 179 VSSHSIAQQRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----RVYTYSLRSLSDFKGKILESHFEGMLLDFN----NRELAVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D  Y
Sbjct: 289 FIGKFNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSIRSP--KGITAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALVNVLNAIHDV-LEGKGKVITVVGA---GGNRDKGKRPIMAKESARLSDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETMD---------GLFLFIQSSLVDGDVVVV--KS 451
           S        +D +   +     + M                      GDV+++  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKG 457


>gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
          Length = 848

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 166/452 (36%), Gaps = 40/452 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG D+I  AV  GAG V  + D          +P   +
Sbjct: 60  LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRPEWDVPNQAI 119

Query: 89  DDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTI---ALSSIKKTYACIGSY 143
            D+              +     II +TG+ GKT+  + L      L    ++ A +G+ 
Sbjct: 120 PDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIVGTV 179

Query: 144 NNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            N     L              TL R           + +S  G  ++  +      AV 
Sbjct: 180 GNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRTAVF 239

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIY 248
           T +   HL     +EE  + KA +F          +N DD+F + L A+   +     +Y
Sbjct: 240 TNLTRDHLDYHRSMEEYGAVKARLFHWQGLQN-AVINTDDAFGQQLCAELKRSESSLHVY 298

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S+G ++ AD ++ ++    +   ++V     S       +G   AQN    LG +     
Sbjct: 299 SYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAGGY 358

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D   A+ ALS   P  G   R  C + +G   ++ + Y   P +++ A++ L +I     
Sbjct: 359 DFQAALNALSHIRPATG---RMDCIIGEGKPLVVVD-YAHTPDALEKALATLREIK-QPA 413

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422
           G    V G   +     +    ++A  L+      V ++  +         + D LP   
Sbjct: 414 GCLWCVFGCGGDRDRGKRPLMGEVAARLA----DKVVVTSDNPRTEDPQAIIADILPAVP 469

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
           H    E           +     D++++  K 
Sbjct: 470 HPALVEADRKAAIEQAIAQAAPNDIILIAGKG 501


>gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
 gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 492

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      +      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechocystis sp. PCC 6803]
 gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 145/396 (36%), Gaps = 30/396 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IP 84
            V G+S +S +  P   F  + G   DG +F   A++ GA   VV+   +      +   
Sbjct: 34  IVTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGEC 93

Query: 85  VFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D++     LA A          ++ +TG+ GKTTT  ++   L+  +++ A +G+
Sbjct: 94  VIAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGT 153

Query: 143 YNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                      A                 +     + + E+    L + R L        
Sbjct: 154 LYTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCG--FAC 211

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     +E   +AKA +F+     G   +N DD + + L  +   L +  
Sbjct: 212 AVFTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDR---LPLDQ 268

Query: 247 IYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +Y++  + + ADF  +                      +   +G     N+L  +     
Sbjct: 269 VYTYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLH 328

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D    +K L  F    GR ++ +   +Q    ++D  Y   P S++ A+       P
Sbjct: 329 LGLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVD--YAHTPDSLENALKA---ARP 383

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              GR I + G   +     +    ++A  L+   +
Sbjct: 384 FIPGRLICIFGCGGDRDRTKRPLMGNIAAQLADLAV 419


>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
 gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
          Length = 491

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 164/481 (34%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATRYA 399

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S        G  +  +      + +    +  + ++  I ++    D++++  K
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANA-KAEDIIIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 491

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATRYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    +    E             ++    D++++  K 
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M0579]
 gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240149]
 gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 492

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
 gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
          Length = 496

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 110/473 (23%), Positives = 209/473 (44%), Gaps = 28/473 (5%)

Query: 4   LWTFHDLLQAIQGHSIGI--VPQGFVNGISIDS----RSIA-PQEAFFAIKGPHY----- 51
           + + H LL  + GH +         +  +   S    R++      F  +          
Sbjct: 1   MTSIHSLLVDMDGHYLKKYRDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNR 60

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DG+      + K     V+ T+      S++ P F V+D    L +L+   R  
Sbjct: 61  KVVKWRDGN---EQIIGKENWFGVIVTEKPIMDPSVTTPQFIVEDSRKFLLELSAKLRSC 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITGS GKT+T+ M+T  L    K     G++N    VPL ++++  + D    
Sbjct: 118 FVNPVVAITGSAGKTSTRMMITHLLQEE-KVLENRGNHNVRFAVPLYMSKLLSNPDVLNL 176

Query: 166 ELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E+ ++ L       +++L++  IA++T+I  AHLS+    + +A  KA+IFEGL++ G  
Sbjct: 177 EVSVNALNSYDTGSMSNLIQQDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIA 236

Query: 224 FLNYDD--SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N D     F +L + +     K +       + D  +++  Q  E   + V   G+ +
Sbjct: 237 IINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDI 296

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFT 340
            +        M  N L  L +   L  ++   IK    F P     +R       G  FT
Sbjct: 297 LLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFT 356

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+++NA+  SMK AI+    I P  +G ++ +LG + ++G+ ++  H  + E L+   
Sbjct: 357 FIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQSA 416

Query: 401 ISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +H++  G H   L +   ++   + + +++  L   +++ L++  +V+ K S
Sbjct: 417 ATHIYGYGEHFKLLFEEGQKTDDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 469


>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 491

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTVEYMRSTAA----TVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
 gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
          Length = 488

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 183/459 (39%), Gaps = 40/459 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                     +  I  DSR + P   FF I+G   DGH ++  AV +GA ++V + D+  
Sbjct: 6   ELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKDLNY 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I  F V++ L  LN+++        +K  II +TGS GKT    M+  A++   
Sbjct: 66  YHDK--IIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAK-Y 122

Query: 135 KTYACIGSYNNHIGV-----------PLTLARMPVDVDFG---IFELGMSHLGEIRFLTH 180
            +   IG+ +                 L L R   +++     +  +  S  G       
Sbjct: 123 CSSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVD 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +  +IAV+T I   HL      E+   AK ++FE ++ TG   LN DD  F  LK  + 
Sbjct: 183 GINFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQ 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I ++G    +D   +  +   + S  ++  +G +  V    I      N+L   
Sbjct: 243 G----RILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALT 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++  +  D    I A+    P EGR +  +    Q F  +ID  Y  + ++ +A    +
Sbjct: 299 GVLIAMGCDDKMVIDAVENVKPIEGRMELIQTE--QQFAVIID--YCQHISNYEAIFEYV 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALK 415
             +   G GR IAVLG     G+ +     +L ++ + Y + HV L+     G  V  + 
Sbjct: 355 DGVR-QGHGRIIAVLGAP---GKRNYKLRKELGQLANRY-LDHVILTQLDDRGEDVYEIC 409

Query: 416 DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             + +    I+    E+               D++++  
Sbjct: 410 KTIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILG 448


>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
 gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
          Length = 491

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 158/480 (32%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +         VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L  +      
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAA----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +         E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
 gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
          Length = 491

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 159/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIGTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    +    E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
 gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
          Length = 493

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 164/455 (36%), Gaps = 42/455 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+  + G+ +DSR   P + +F + G  +DGHDF+   + KG   +V            
Sbjct: 17  APEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVKAIVHAK--PIEHMHK 74

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    V++V   LN++A            +  +TG+ GK+T   ++    S        
Sbjct: 75  GVAYIQVENVNRTLNRIASLFYQHPSRYMKVFGVTGTNGKSTITSIIQDVYSH-FHPCGY 133

Query: 140 IGSY---------------NNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                 + I +  ++A M    ++    E+    L   R ++  V 
Sbjct: 134 IGTIAIRYGDVELPPSLTTPDPILIHKSMADMRAAGMEACALEVSSHGLELGRVMS--VD 191

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IA+ + +   HL     IE    AK ++F  L+  G   LN DD++++     ++   
Sbjct: 192 FDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTNLKSDGVAVLNRDDAYYQAFADCTNG-- 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G   ++D++    +  ++ S   +    KS  +  + +  +   N+L  +  +
Sbjct: 250 --RLVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEKSYTIKTNLVAMYNIYNLLGAIAGM 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++  +  L+     EGR +R     ++G    +   +   P  ++        I
Sbjct: 308 CEAGIAIEDMLPYLASIKQIEGRMERI----DEGQLFNVIVDFAHTPDGLEKVFEYAKDI 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALP 419
           +  G    IAV G     G+          E+ S Y  S +             + + + 
Sbjct: 364 TKEGHS-IIAVFGS---AGKRDTKKRKVFGEIASKYCDSIILTEDDPRDEDAREIANEIK 419

Query: 420 RSIHVH---YSETMDGLFLFIQSSLVDGDVVVVKS 451
             I      + E           S    D V++  
Sbjct: 420 EGIKDTKNIFIEDRYNAIRQAIESAGAYDTVLILG 454


>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
 gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
          Length = 491

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTVEYMRSTAA----TVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 491

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTVEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
 gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 491

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTVEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 488

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 170/462 (36%), Gaps = 43/462 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +       ++ + +DSR       FF +KG   DGH F   AV+ GA  VV + D+  
Sbjct: 5   KLVNTELDCDIDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDV 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   I    VDDV+  L+++         +   +  ITG+ GK+TT   +   L    
Sbjct: 65  IEG---IVYIRVDDVMTELHRVTDVFYNSPSTNMYVYGITGTNGKSTTMLTVRNILRRFG 121

Query: 135 KTYACIGSY----NNHIGVPLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTH 180
                IG+     N H   P       V++   + ++           +S  G       
Sbjct: 122 VNAGYIGTISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    A  T +   HL     +E    AK  +F+ L+ +G + LN D+ + E+L+ + +
Sbjct: 182 SIDFDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPSGFMVLNIDNEYGEILQNQDY 241

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +     + ++G  +  A ++ +      + +   +  +GK+  VV + +      NML  
Sbjct: 242 S----NVVTYGVDNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNV 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I+      ++  I  L      +GR    +  +N+G    +   +   P SMK     
Sbjct: 298 IAILHQRGYALEKIIPELKDIEHVDGR----QTMVNKGQPFRVIVDFGHAPDSMKNVYEF 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLAL 414
           +         R I V G     G    +    +  V S+Y   HV ++        V+ +
Sbjct: 354 VRSTQDE-GARLITVFGA---AGGRDTAKRPIMGRVASMY-CDHVIITEHDNRDERVVDI 408

Query: 415 KDALPRSIH---VHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451
              +   I      +               + GD VV++ K 
Sbjct: 409 TQDIITGIESNNYEFVPNRTDAIEKALKMALPGDTVVLIGKG 450


>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 531

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 171/482 (35%), Gaps = 64/482 (13%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
              G      V  I  +SR + PQ  F AIKG   DGH F+  AV+KGA  VV    + A
Sbjct: 20  EITGAQGDPDVISIQYNSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVVTEEPVEA 79

Query: 77  SIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            IG   + V  V D   AL  +A     R   K  +  ITG+ GKTT        L +  
Sbjct: 80  PIG---VAVIRVKDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAEAMLGAAG 136

Query: 135 KTYACIGSYNNHIGV---------------PLTLARM-PVDVDFGIFELGMSHLGEIRFL 178
                +G+ ++                     TLARM    V   I E+    L + R  
Sbjct: 137 CKVGIVGTVSSRWPGHEKESSVTTPESLELQETLARMVDAGVTHAIIEVSSHALTQSRP- 195

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFE 233
               +    V T I   HL     +E    AK  +F+ L     ++  T  +N DD    
Sbjct: 196 -AFCQFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVINLDDPQGA 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +L  +        +   G ++ +  +    K  ++     ++     +      +G H  
Sbjct: 255 VLCREVKT----PVLCTGLTEGSSIRSIDVKAGADGLKGVMETPAGELVFESPAVGRHNL 310

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N++   G+       ++     L+      GR ++    L++  F      Y   P ++
Sbjct: 311 YNLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKVENGLDRHVFV----DYAHTPDAL 366

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEVLS--------L 398
           +  +  L ++S   + + I V G   +  +        + + H DL  V S         
Sbjct: 367 ENVLEALRRVS---KAKIITVFGCGGDRDKGKRPKMGAAAARHSDLVVVTSDNPRSEDPE 423

Query: 399 YNISHVW--LSGFHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  +   +SG     L  +       +S  +   +    +   I SS   GD+V++  
Sbjct: 424 AIIDDILPGISGEGAQRLNASYCMMCSRKSAFMVEPDRRKAILTAIMSS-GPGDLVLIAG 482

Query: 450 KS 451
           K 
Sbjct: 483 KG 484


>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
 gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
          Length = 485

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/468 (19%), Positives = 169/468 (36%), Gaps = 42/468 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+ ++  S+       +  IS DSR +     F  I+G   DGH++I  A+QKGA  ++
Sbjct: 6   ILKDVEILSVNGQVDIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAIL 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           ++  +    G   I V  V + +  + K         K  +I +TG+ GKT+T   +   
Sbjct: 66  IDKKISYKKGITYIRVNNVKESMAIIGKNFFQN-PCQKINLIGVTGTNGKTSTVSFIKQI 124

Query: 130 LS--------------SIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGE 174
           L                 KKT   I +    + +   L  M   +  + + E+    L  
Sbjct: 125 LGYDCKVGSIGTIEIYDGKKTITSINTTPESLDIQKNLNEMIKNNCKYCVMEVSSHALVL 184

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R     +    AV T +   HL     +E   +AK ++F   +       N DD   E 
Sbjct: 185 NRI--DNIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLFY--KTKSINIFNIDDKVGEE 240

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              KS    IKT Y++G  K ADF+    K   +++  ++ +  +  +V    +G     
Sbjct: 241 FFNKSLNRDIKT-YTYGVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVY 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +    +L    +  IK +       G   R     N     +I + Y   P ++ 
Sbjct: 300 NTLAAITTCILLGLSREDVIKRVQNLKSVSG---RLDKVENDKNVNIIVD-YAHTPDAL- 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409
             +++L       + R I V G     G   ++    + ++        +  S       
Sbjct: 355 --LNILKSARLFTKNRIILVFGC---GGNRDKAKRPIMGKIAQQNADISIITSDNPRFEK 409

Query: 410 HVLALKDALPRSIHV----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  ++D L             +  +            GD++++  K 
Sbjct: 410 EMDIIEDILCGIDKTLDNYFVVQDREDSIKKAIELYEVGDLIIIAGKG 457


>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 491

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTVEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 482

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 180/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILC--EDMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K+     N D
Sbjct: 179 VSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++      DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S 
Sbjct: 347 TPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITSD 402

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                  +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 503

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 143/406 (35%), Gaps = 38/406 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             I       +  +  DSR I P   F  + G H DGHD+   A++ GA  +V   ++  
Sbjct: 13  KKITGSTSADITNLETDSREIRPGGVFVCVPGFHVDGHDYAEQAIRNGAVAIVAERELSG 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G+  +    V D    L  LA A       +  +I ITG+ GKTTT  M+   L+  +
Sbjct: 73  LPGN--VTHITVPDTRRILPILANAFFGDPTRQLKLIGITGTNGKTTTTHMVDQILNDAR 130

Query: 135 KTYACIGSYNNHI--GVPLTLARMPVDV--------------DFGIFELGMSHLGEIRFL 178
           +    IG+    I   V  TL   P  +              ++G+ E+    L   R  
Sbjct: 131 RKTGIIGTLYMKIGNHVEKTLNTTPDTIQLMRYFHTIISHGGEYGVLEVSSHGLDMGR-- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----GTIFLNYDDSFFE 233
                    V T ++  HL     +E   + K  +F  L  +         LN DD+   
Sbjct: 189 VRGCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNRDMQKKAVLNADDAASS 248

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               ++ A     I ++G    AD +  +     E      +    S +V     G H  
Sbjct: 249 YYAKRTSA----QIITYGIQNQADVRATQIHHSREGCVFHAETPWGSSDVNLKVHGAHNI 304

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +    +    ++    +L  F    GR +  +     G        Y  NP  +
Sbjct: 305 YNALAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTGRRFGVVV----DYAHNPDGL 360

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           KA +     I+    G+ I V+G   E     +    D+A   S Y
Sbjct: 361 KATLQSAKAITS---GKMICVMGCRGERDRSKRPIMADIAASYSDY 403


>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 488

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 164/467 (35%), Gaps = 33/467 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  ++   +       + GI+ +S+++ P + F AI G   DGH FI  A+  G
Sbjct: 1   MLLRHLLDILEYEELYGSDAVDITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+   +    IG  S+P   V D   AL           ++KA +I ITG+ GKTTT
Sbjct: 61  AKAVIGEKE----IGKQSVPYIKVTDSRKALALAAKRFYKNEQNKAIMIGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP------------LTLARMPVDVDFGIFELGMS 170
             ML   L +   T +  GS  N +               L L +     +  +  + ++
Sbjct: 117 SYMLKHILETCGHTCSLFGSVQNIVNGQVLPATTNTTMDALELQKQLAASNDQVVIMEVT 176

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++   + +     + T ++  HL     +E    AK  +FE L   G   +     
Sbjct: 177 SHALMQHRVYGIEFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQLAPAGKAVIQAQGE 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + E   A      +  IY+ G    A  QL   +         +    K+ ++    +G 
Sbjct: 237 WGEAFLASLKQRDVPYIYTLG-GAEATLQLSNVRI-ERPMQATLAEDHKAYDLKVPLLGE 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N  +      +L  +    + AL  F    GR +       +G   +ID  Y    
Sbjct: 295 HNVYNAAIAFLTARLLGLNARKILAALEKFPGVPGRFELIH--HPKGANIVID--YAHTE 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGF 409
            +    +    ++S     R I V G         +   +++++  S + I +   L+G 
Sbjct: 351 DAFYHCLKTAEELSA---RRIIHVFGFRGNRDTSKRQAMVNVSKRFSDFIILTMDDLNGE 407

Query: 410 HVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               ++  L       +                   +GD V +  K 
Sbjct: 408 SFERMRKKLENYQLGENGVVIPDRTSAIAHAWELAENGDWVFITGKG 454


>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
 gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
          Length = 482

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 182/479 (37%), Gaps = 54/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILC--EDMPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L       +     I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K+     N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++      DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKAS-DRVIITS 401

Query: 409 F------------HVLALKDALPRSIHVHYSETMDGLFLF--IQSSLVDGDVVVV--KS 451
                         +LA  DA      V  ++  + +     +      GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDAEDMKKTVSIADRKEAIRTACMLAE---KGDVILVAGKG 457


>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
 gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
          Length = 482

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 180/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILC--EDMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K+     N D
Sbjct: 179 VSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++      DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S 
Sbjct: 347 TPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITSD 402

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                  +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 491

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 163/481 (33%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD         + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDVVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S        G  +  +      + +    +  + ++  I ++    D+V++  K
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANA-KAEDIVIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
 gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/495 (18%), Positives = 170/495 (34%), Gaps = 61/495 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                LL+ I    I      +  V+ +  +SR   P   F AI+G   DGH++I  AV+
Sbjct: 1   MNLSILLKGINILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVR 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA ++V   ++        + V      LG L +    A        +A+ G+ GKTT 
Sbjct: 61  CGAKVIVCEKEVTMPPEITVVRVENGRRTLGLLAR-NFYADPSRCLVAVAVMGTNGKTTV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDV--DFGIFE 166
             +L     +   +   +G+ N      +  A              R  VD      + E
Sbjct: 120 TYILESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLVAE 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----- 221
           +  SH  ++R +       + + T +   HL     +E    AK   F  +   G     
Sbjct: 180 VS-SHAVDLRRIDD-CDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHR 237

Query: 222 -TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N DD + + L  ++    I    +FG  + AD +   +    +    E+ +   S
Sbjct: 238 YAMAVNADDPWGKRLIRETGE--ISRPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMS 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    IG     N+L  +     L   ++   + +   +   GR ++   +     F 
Sbjct: 296 FDVDTALIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKVSGSTQPDVFV 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA------- 393
                Y     +++    VL  +SP   GR I V G   +     +     +A       
Sbjct: 356 ----DYAHTDDALR---RVLQSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSDLT 408

Query: 394 -------EVLSLYNISHVWLSGFHVLALKDALPRSI--------HVHYSETMDGLFLFIQ 438
                        +I      G +  ++ +     +        +V   +  + +   I+
Sbjct: 409 ILTSDNPRSEDPLSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAAIR 468

Query: 439 SSLVDGDVVVV--KS 451
           S+    D+V++  K 
Sbjct: 469 SA-RPSDIVLIAGKG 482


>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
 gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
          Length = 489

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 176/482 (36%), Gaps = 56/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR +A    FF +KG   DGHDF   AV +G
Sbjct: 1   MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +     S+ +PV  V D   A+  L  A   R   +  +I +TG+ GKTTT
Sbjct: 61  AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             ++        K    IG+ +  +G     A                 +   V+F   E
Sbjct: 116 TSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R   H     +AV T +   HL     +EE  +AK  +F  L       + 
Sbjct: 176 VSSHALHQGR--VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN+DD   +  K  + A     I ++G  + +D    + +  +      +     S
Sbjct: 234 KFAVLNHDDPVSQYYKHMTAA----PIVTYGMREKSDVMAEQIRMTAGGMAFRLCTPHGS 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G     N+L            ++T   AL+   P  G   R+        FT
Sbjct: 290 AAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPG---RFETVDEGQNFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++ A+  + Q++   +     V+G     G+   S    +A+V   Y 
Sbjct: 347 IIVD-YAHTPDSLENALKTVRQLA---KRNVYVVIGC---GGDRDPSKRPLMAQVAVRYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV-- 449
              ++ S           +  ++  +   I  H      +    +      +GDVV++  
Sbjct: 400 DVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 486

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 176/478 (36%), Gaps = 56/478 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  I     GI     +  I+ DSR + P   FFAI G   DG+ FI  A++KG
Sbjct: 1   MKLKKLLNHIGISYEGI--DLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKG 58

Query: 65  AGLVVVNTDMVASI--GSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKT 120
           A  V+ +   V  +      +P   V D+    AL           K  +I +TG+ GKT
Sbjct: 59  AVAVISDNAEVVKLYSKKYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGI 164
           TT  ++   L+ +    A IG+           A                 +   ++F +
Sbjct: 119 TTSYIIYNVLNKLGHKTAIIGTVEYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEFVV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L E+  +T + +   A+ T +   HL     I     +K ++F  L K+    
Sbjct: 179 SEVSSHGL-ELHRVTGI-KFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLF-FLTKS-ISV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD F ++L     A+    + ++GK+     ++   +     S + ++L+ K   + 
Sbjct: 235 INIDDPFGKVLSG-LRAIFPCELITYGKNGK--VKIENVENKKFGSEITLRLENKRYVIK 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G + A N+     ++  L    +       +F   +  G+      N      ID 
Sbjct: 292 TNLKGEYNAYNVAAAFSLLVSLGFKAEEIKD---LFESIKVPGRLEEVVEN----VFID- 343

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  ++VLSQI    +G+ I V G   +     + F   +AE  S      V
Sbjct: 344 -YAHTPDALEKVLTVLSQIK---KGKLITVFGCGGDRDREKRPFMGKVAEKFS----DRV 395

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   +     V                    D+V++  K 
Sbjct: 396 IITNDNPRSEEPSKIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKG 453


>gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
 gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
          Length = 487

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 166/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    D    +    +
Sbjct: 15  DLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVAYEVDGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +                 N I V  TLA +       +  E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L A+       
Sbjct: 193 VAVMTNLSRDHLDYHGTMEAYAAAKAKLFAW-NDLKCRVVNLDDEFGRHLAAQDSES--- 248

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + S+  +  +A    R+ +   E     +        +    +G     N+L  +G + 
Sbjct: 249 RLISYSLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +  L       GR +R       G   L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILNVLPKLEGPAGRMQRL----GGGEQPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SGFHVLALK 415
           PH +G+ + + G   +     +    ++ E L+      V +          G     ++
Sbjct: 362 PHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLA----DGVLVTDDNPRTEDPGQIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +    +          + +S    DVVV+  K 
Sbjct: 418 AGFKDASKAAFVAGRGAAIAQLIASASADDVVVLAGKG 455


>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Bacillus sp. m3-13]
          Length = 496

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 156/456 (34%), Gaps = 49/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I  DSR +     F  IKG   DGH +I  A++KGA ++VV       +  +     
Sbjct: 23  VSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVVQDMPEQLVEGIC--YV 80

Query: 87  GVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL +LA A      +K  I+ +TG+ GKTT   ++   +          G+  
Sbjct: 81  HVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEGYKTGLSGTIE 140

Query: 145 NHIGVP-----------LTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPHIAV 188
             I              LT+ RM  D+        + E+    L   R     V     V
Sbjct: 141 IDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRL--AGVEFQNGV 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALGI 244
            T +   HL     +E   +AK  +F  L     K     LN DD+  +     + A   
Sbjct: 199 FTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYVQMTGA--- 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I ++G    ADF+ R+ +    ++   ++      E+    +G     N+L  + ++ 
Sbjct: 256 -RIITYGIKNEADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYNILSVICVLW 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +  +  L    P  GR +       +    +ID  Y     ++  A+  +   S
Sbjct: 315 DKGMPFERILNHLRETTPPSGRMQTLETGDKRN--VIID--YAHTEDAIGKALDSIRMFS 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-------SGFHVLALKDA 417
            H     I         G   +     +  + +  +   ++         G  ++     
Sbjct: 371 KHKIISII------GTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQGMAE 424

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +       +   +       +GDV+++  K 
Sbjct: 425 GAVHENFECIPDREQAIIRAVEIAGEGDVILIAGKG 460


>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 491

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 163/481 (33%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD         + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDVVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S        G  +  +      + +    +  + ++  I ++    D+V++  K
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANA-KAEDIVIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
 gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
          Length = 482

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 184/477 (38%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   +    +  + G++IDSR +A    F A++G   DGH +I  A+++G
Sbjct: 1   MKLTELLKAIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +    +  I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AIAVLC--EDMPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L             I +  N+I             P+TL R+  +       +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ + K+     N
Sbjct: 179 VSSHSIAQQRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D  Y
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSIRSP--KGITAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +     G+ I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALVNVLNAIHDVLAG-RGKVITVVGA---GGNRDKGKRPIMAKESARLSDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETMDGLFL------FIQSSL---VDGDVVVV--KS 451
           S        +D +   +     + ++           I+++      GDV++V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKG 457


>gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 511

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/473 (23%), Positives = 209/473 (44%), Gaps = 28/473 (5%)

Query: 4   LWTFHDLLQAIQGHSIGI--VPQGFVNGISIDS----RSIA-PQEAFFAIKGPHY----- 51
           + + H LL  + GH +         +  +   S    R++      F  +          
Sbjct: 16  MTSIHSLLVDMDGHYLKKYRDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNR 75

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DG+      + K     V+ T+      S++ P F V+D    L +L+   R  
Sbjct: 76  KVVKWRDGN---EQIIGKENWFGVIVTEKPIMDPSVTTPQFIVEDSWKFLLELSAKLRSC 132

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITGS GKT+T+ M+T  L    K     G++N    VPL ++++  + D    
Sbjct: 133 FVNPVVAITGSAGKTSTRMMITHLLQEE-KVLENRGNHNVRFAVPLYMSKLLSNPDVLNL 191

Query: 166 ELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E+ ++ L       +++L++  IA++T+I  AHLS+    + +A  KA+IFEGL++ G  
Sbjct: 192 EVSVNALNSYDTGSMSNLIQQDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIA 251

Query: 224 FLNYDD--SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N D     F +L + +     K +       + D  +++  Q  E   + V   G+ +
Sbjct: 252 IINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDI 311

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFT 340
            +        M  N L  L +   L  ++   IK    F P     +R       G  FT
Sbjct: 312 LLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFT 371

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+++NA+  SMK AI+    I P  +G ++ +LG + ++G+ ++  H  + E L+   
Sbjct: 372 FIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQSA 431

Query: 401 ISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +H++  G H   L +   ++   + + +++  L   +++ L++  +V+ K S
Sbjct: 432 ATHIYGYGEHFKLLFEEGQKTDDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 484


>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 487

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 170/473 (35%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+   P   VN I  DSR +   + F AI G   DGHDFI  A ++GA 
Sbjct: 4   LKDILYKVTLESVTGNPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKKAEEQGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++   + +       I      D   AL  +A            ++ ITG+ GKTT   
Sbjct: 64  AIIC--EQMPEDFVNGITYVQTSDTAQALAVMASNYYENPSENLKLVGITGTNGKTTIAT 121

Query: 125 MLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFE---LGMS 170
           +L    +        + +             +     LT+ +    ++    E   + +S
Sbjct: 122 LLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNEAGVEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL       E    K   F+ L KT     N DD 
Sbjct: 182 SHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDNLPKTAFALSNIDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +++   + A  +    ++     AD++     Q  E  +  + L+    EV    IG 
Sbjct: 242 NGQVMLQNTRAKKV----TYALKSFADYRA----QILENQFTGLLLKVNDQEVWVKLIGS 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L       +L      A++ LS      G   R++  ++    T I + Y   P
Sbjct: 294 FNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSG---RFQYMISAKKITAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E   I V+G     G+  ++    + ++ +  +   V+ S   
Sbjct: 350 DALKNVLETINDIRTKNE-ELITVVGC---GGDRDRTKRPKMGKIAAALSTKVVFTSDNP 405

Query: 409 --FHVLALKDALPRSIH-VHYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
                  + + +   +  V Y +T+                 + D++++  K 
Sbjct: 406 RSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKG 458


>gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 495

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 171/479 (35%), Gaps = 44/479 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T    L A+   + G      + G+S+DSR++ P   F A+ G    G +FI +A
Sbjct: 1   MAPQKTLP--LSALGLRAKGGQ-DVEITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYA 57

Query: 61  VQKGAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           ++  A  ++ + +        + +    +   +D   AL   A          ++A+TG+
Sbjct: 58  LRMEAAAILTDREGARIAADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGT 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYN----------NHIGVPLTLARMPVD-----VD 161
            GKT+         + +    A IG+            +    P+TL R+  +     V 
Sbjct: 118 NGKTSVASFTRQIWTELGLMAANIGTTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVT 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKT 220
               E     L + R     V    A  T     HL   +  ++   AKA +F   L   
Sbjct: 178 HAAMEASSHGLDQRRL--EGVHLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDD 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   LN DD     L+  +   G + + S G++++   QL   +       +     G+ 
Sbjct: 236 GVAVLNVDDPRGRELEEIAQERG-QEVISIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRP 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    IG   A+N+L+  G+     +D D             G   R + A  +    
Sbjct: 295 QTVQLDLIGGFQAENVLVAAGLAIASGSDPDEVFATFPALTTVRG---RMQLAAKRDNGA 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I   Y   P ++  A+  L    PH  G+ + V G     G+   +    + +  + Y 
Sbjct: 352 AIFVDYAHTPDALATALEALR---PHVMGKLVVVFGA---GGDRDTTKRKLMGKAAADY- 404

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG----LFLFIQ--SSLVDGDVVVV--KS 451
              V ++  +      A  R++ +      +         ++    L  GD +++  K 
Sbjct: 405 ADVVIVTDDNPRTEDPAAIRAMVLEGCPDANEYGDRAEAILRGVDMLDPGDALLIAGKG 463


>gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA6140]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 162/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 488

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/459 (22%), Positives = 183/459 (39%), Gaps = 40/459 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                     +  I  DSR + P   FF I+G   DGH ++  AV +GA ++V + ++  
Sbjct: 6   ELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKNLNY 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I  F V++ L  LN+++        +K  II +TGS GKT    M+  A++   
Sbjct: 66  YHDK--IIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAK-Y 122

Query: 135 KTYACIGSYNNHIGV-----------PLTLARMPVDVDFG---IFELGMSHLGEIRFLTH 180
            +   IG+ +                 L L R   +++     +  +  S  G       
Sbjct: 123 CSSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVD 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +  +IAV+T I   HL      E+   AK ++FE ++ TG   LN DD  F  LK  + 
Sbjct: 183 GINFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQ 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I ++G    +D   +  +   + S  ++  +G +  V    I      N+L   
Sbjct: 243 G----RILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALT 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++  +  D    I A+    P EGR +  +    Q F  +ID  Y  + ++ +A    +
Sbjct: 299 GVLIAMGCDDKMVIDAVENVKPIEGRMELIQTE--QQFAVIID--YCQHISNYEAIFEYV 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALK 415
             +   G GR IAVLG     G+ +     +L ++ + Y + HV L+     G  V  + 
Sbjct: 355 DGVR-QGHGRIIAVLGAP---GKRNYKLRKELGQLANRY-LDHVILTQLDDRGEDVYEIC 409

Query: 416 DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             + +    I+    E+               D++++  
Sbjct: 410 KTIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILG 448


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/469 (22%), Positives = 195/469 (41%), Gaps = 30/469 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFIL 58
           MN  +T   L +      IG   +  V G++ DSR+I      AF AI      G  +I 
Sbjct: 1   MN--YTTLQLSEITGSELIG-DGKLCVTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYIT 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117
            A++KG  +V+    + +      +    V+D L  + KLA     +    T I ITGS 
Sbjct: 58  SAIEKGISVVISQHRIESETD---VTWIIVEDSLKFIQKLAKYHFAQFTLKTTIGITGSN 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L  +L     T     S+N+ +G+PL+L ++    + GIFE+G+S   E+  
Sbjct: 115 GKTIVKEWLYQSLFDEFITVKSPKSFNSQLGLPLSLLKVSARDEIGIFEVGISKPSEMER 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P I V+T I PAH SNF   +++   K ++F     +  I  N D+     L  
Sbjct: 175 LADIFKPQIGVLTHIGPAHESNFENQKQLIEEKIKLFS---DSDVILFNGDNLLVHSL-- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +     K + S+G   + D      K   ++  + +   G+   +           N L
Sbjct: 230 ITERYSSKKLISYGFETHNDIF---IKSSPKEGDLSIVYFGEEFNLPAQRRDEATLNNAL 286

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + ++ +L    D   + +++  P E    R           +I++ YN +  S+K A 
Sbjct: 287 CVIAVLKVLGFSTDIIREKINMLKPVE---MRLESVKGLRNNLIINDYYNLDLDSLKIAF 343

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++ +      +  VL D  E G+ +   +  ++ + +     HV+L G  +    + 
Sbjct: 344 QFINEYNKPA---KTLVLTDFVE-GKETTLLYQTVSNLTNQQKFQHVFLIGDEITKYSEL 399

Query: 418 LPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 V        L    ++ S   + +++++K +      ++ + L
Sbjct: 400 F--EGDVAVFNNTTQLIESHYLDSV--ENELILLKGARKFEIEKVKDHL 444


>gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 482

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 179/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILC--EDMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K+     N D
Sbjct: 179 VSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++      DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R  L     T I + Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPL---GVTAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S 
Sbjct: 347 TPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITSD 402

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                  +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
 gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
          Length = 489

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 177/482 (36%), Gaps = 56/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR +AP   FF +KG   DGHDF   AV + 
Sbjct: 1   MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARK 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +     S+ +PV  V D   A+  L  A   R   +  +I +TG+ GKTTT
Sbjct: 61  AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             ++        K    IG+ +  +G     A                 +   V+F   E
Sbjct: 116 TSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R   H     +AV T +   HL     +EE  +AK  +F  L       + 
Sbjct: 176 VSSHALHQGR--VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN+DD   +  K  + A     I ++G  + +D    + +  +      +     S
Sbjct: 234 KFAVLNHDDPVSQYYKHMTAA----PIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGS 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G     N+L            ++T   AL+   P  G   R+        FT
Sbjct: 290 AAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPG---RFETVDEGQNFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++ A+  + Q++   +     V+G     G+  +S    +A+V   Y 
Sbjct: 347 IIVD-YAHTPDSLENALKTVRQLA---KRNVYVVIGC---GGDRDRSKRPLMAQVAVRYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV-- 449
              ++ S           +  ++  +   I  H      +    +      +GDVV++  
Sbjct: 400 DVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
 gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
          Length = 491

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S         A+ D +    + +  E             +     D++++  K 
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
 gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
          Length = 492

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
          Length = 483

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/482 (21%), Positives = 184/482 (38%), Gaps = 58/482 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    DLL+ IQ   I       + G++IDSR I     F A++G   DGH +I  A++K
Sbjct: 2   LMKLSDLLKTIQPVHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYIPAAIEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  V+   + +       I    V D   A+ K+A A      SK  ++ +TG+ GKTT
Sbjct: 62  GAIAVLC--EDLPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIF 165
              +L             I +  N+I             P+TL R+  +       +   
Sbjct: 120 IATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R     ++    + T +   HL     +E    AK + F+ + K+     
Sbjct: 180 EVSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLT 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+  
Sbjct: 238 NLDDKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAV 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L   G   +L    +  + ALS  HP  GR    R    +GF  ++D  
Sbjct: 290 RFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--KGFTAIVD-- 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V 
Sbjct: 346 YAHTPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKESARLS-DRVI 400

Query: 406 LSGFHVLAL--------------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           ++  +                  KD L +++ +                   GDV++V  
Sbjct: 401 ITSDNPRFEEPQDIINDMLAGLGKDDLQKTVSIT---DRREAIKAACMLAQPGDVILVAG 457

Query: 450 KS 451
           K 
Sbjct: 458 KG 459


>gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 487

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G + DG   I  A+++GA  V    +  + +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAVAYEVEGSSVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--IAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E   +AKA++F          +N DD F   L    H     
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYGAAKAKLFAW-PNLNCRVINLDDEFGRKLATLKHES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +    A    R  +   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHFLRSALLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQRL----GGASKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +            ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRNEPPSQIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V + E        + +S    DVVV+  K 
Sbjct: 418 PGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKG 455


>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
 gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
          Length = 487

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 179/477 (37%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL  +    +       +  I  DSR I P + F A +G + DGH FI  A+ +
Sbjct: 1   MKKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  VV   + +       +      D   AL  +A         +  ++ +TG+ GKTT
Sbjct: 61  GAVAVVC--EQLPENRPEEVTYIWTADTSEALGVMAGNYWDNPSRELKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---GVPLT-----------LARMPVDVDFGIFEL 167
           T  +L   +    +    + +  N+I    +P T           L R  VD       +
Sbjct: 119 TATLLYELVRLAGEKAGLLSTVCNYIGEEKIPATHTTPDALSIQELLRRMVDAGCRYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     +    A+ + I   HL      +    AK   F+ L        N 
Sbjct: 179 EASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKKAFFDRLPAHAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A      Y++     ADF  +  ++  + +   ++L G+  EV    
Sbjct: 239 DDKNGLVMLQNTRAHR----YTYSCRTMADFTAKAIEKHLDGTL--LRLDGE--EVWTKF 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+L       +L    +  ++ +S+  P  GR +       +G   ++D  Y 
Sbjct: 291 TGDFNAYNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFE--TLISTEGVMAVVD--YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +S +  +      + I V+G     G+  ++   ++A+    Y+  HV L+
Sbjct: 347 HTPDAVENVLSTICGLKGRDN-QVITVVGA---GGDRDKTKRPEMADAACRYS-DHVILT 401

Query: 408 GFHVLA------LKDALP--RSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             +  +      ++D L   +    +  E +      I+ ++     GD+++V  K 
Sbjct: 402 SDNPRSEDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIILVAGKG 458


>gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
 gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
          Length = 500

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/465 (19%), Positives = 170/465 (36%), Gaps = 51/465 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-----------MVA 76
           N +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 21  NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFAK 80

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +  + +  V  V ++   L+ +A A       K T++ ITG+ GKTTT ++     + + 
Sbjct: 81  NHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLG 140

Query: 135 KTYACIGSYNNH---------------IGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFL 178
              A +G+  N                I +   LA  + +  DF   E+    L + R  
Sbjct: 141 GKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYR-- 198

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +A+ T ++  HL   + +EE A AK  +F  L       +N DD       AK
Sbjct: 199 AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ-VINADDEIGREWLAK 257

Query: 239 -SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A+ + T   F   +    + +  +   + + +EV+    + E+    IG     N+L
Sbjct: 258 LPEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGELKSRLIGAFNVSNLL 317

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                +  L  D+   I+   + +   GR +      N     ++   Y   P +++ A+
Sbjct: 318 TAFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKAL 377

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
                   H EG    V G   +     +     +AE L+      V ++  +       
Sbjct: 378 DA---ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLA----DKVIVTDDNPRTEDPD 430

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +     +   V              +     DV+++  K 
Sbjct: 431 VIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKG 475


>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
 gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
          Length = 491

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 163/481 (33%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERSIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD         + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDVVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATQYA 399

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S        G  +  +      + +    +  + ++  I ++    D+V++  K
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANA-KAEDIVIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
 gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
          Length = 486

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 100/481 (20%), Positives = 178/481 (37%), Gaps = 58/481 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KG
Sbjct: 1   MELRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V         G  S     V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AVAIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVDFGIFE 166
             +L      +      + +  N+I             PLTL  +         ++   E
Sbjct: 119 ATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + R ++ L      + T +   HL     +E    AK + F+ L        N
Sbjct: 179 VS-SHSIDQRRISGL-SFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ +  +   E +  ++ + G+  EV+ H
Sbjct: 237 ADDKSGLVMLQNTKAKK----LTYSLRTLADFKGKILESHFEGT--DLIINGR--EVMVH 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D  Y
Sbjct: 289 FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P ++   ++ + ++   G+GR I V+G      +  +      A  LS   I     
Sbjct: 345 AHTPDALTNVLNGIHEV-LDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVILTSDN 403

Query: 402 ------SHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
                   +    ++G   + ++ AL  +      +T   L          GDV++V  K
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLA-------KKGDVILVAGK 456

Query: 451 S 451
            
Sbjct: 457 G 457


>gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
 gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 155/350 (44%), Gaps = 19/350 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGI 164
               II ITGS GKT+ K +L   ++    T     SYNN +G+ LT+ +      +  +
Sbjct: 179 QNLHIIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMGITLTIRKQLQSLHEVFL 238

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+G  H+ EI  L   V+P  +++T I P HLS F  +E I   K +  E L K G  F
Sbjct: 239 CEMGADHVHEISALMAFVKPSWSIVTAIGPQHLSTFQTMEHIVHEKMQAIECLPKDGIGF 298

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN D+++      +        I ++G    AD++++      + +  ++ ++G      
Sbjct: 299 LNIDNAWIREYPIQ----NTCRIVTYGTHAAADYRIKDIVYSKQGASFKIHVKGVDYAFH 354

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N+   + +   L  ++    +        E R +    +     +T++D+
Sbjct: 355 TKLLGKHNVVNIAAGIAVAHCLGIELSVLQELTKHLPYVEHRLQLRPTS----SYTMLDD 410

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YN+N      A+ VL+++    EG+ I V     ++G++ ++ H+ L + L+      V
Sbjct: 411 AYNSNVEGATYALEVLAKM----EGKHIVVTPGFLDLGDMEENAHVRLGKQLTQV-ADEV 465

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G H     V  L+ A   S HV+  E +   F  ++       VV+ 
Sbjct: 466 ILVGQHQSKHIVKGLQQAQYDSRHVYVCENIQEAFELLKQLATKDSVVLF 515


>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
 gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
          Length = 491

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 164/481 (34%), Gaps = 56/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +      + +PV  V +   +L         +   K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  I                +  T A+M    VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALDLGR--VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+        + A    T+ ++G    +D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAA----TVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    IG     N+L       +    ++T I  +       G   R+        +T
Sbjct: 290 VNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPG---RFEVVDGGQNYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +    Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLKTAKQFA---KGDVYCIVGC---GGDRDRTKRPIMASVATRYA 399

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              ++ S        G  +  +      + +    +  + ++  I ++    D++++  K
Sbjct: 400 THAIYTSDNPRSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANA-KAEDIIIIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 513

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 169/448 (37%), Gaps = 39/448 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GI+ +S  I P   F AIKG   DGH +I  A+  GA L++        + +L +P 
Sbjct: 49  EVKGITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGAILII----GENELMNLEVPY 104

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V     AL ++A            +I ITG+ GKTT    +   L     + + IG+ 
Sbjct: 105 LKVKSARKALGQVAKLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSSIGTI 164

Query: 144 NNHIGV-----------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +N I               T+ ++ V     +  + +S  G  +     ++   A+   +
Sbjct: 165 HNEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYALFNNL 224

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL   + +EE    KA +F+ L+  GT  +N DDS+   L     A G K I + G+
Sbjct: 225 QHDHLDYHNTMEEYFECKALLFQKLKPNGTAIINSDDSWGLKLIEHLTAEG-KKILTVGE 283

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              ++ Q+   +       + V  +     +     G H   N+ M+   V  L    + 
Sbjct: 284 QSFSNVQILSKELND----VSVMHKNMEYSLRTPLPGMHNLYNLSMSSCAVHELGVPYEK 339

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +S F    GR + +    N      +   Y   P +++ AI+       +     I
Sbjct: 340 VKPYMSDFTGISGRFELFHLENN----VTVVVDYAHTPDALEIAINTAINNGANH---II 392

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKD---ALPRSIHVHYSE 428
            V G         +   +++   LS  +I  V  L G  +  L      + +   V  S 
Sbjct: 393 TVFGFAGNRDTSKRKAMLEIVTRLSDSSILTVTELFGSTIDKLYTDYVMIQKECQVEDST 452

Query: 429 T--MD---GLFLFIQSSLVDGDVVVVKS 451
           +  MD    +   I+ +   GD V++  
Sbjct: 453 SIIMDRTLAIQKAIKDA-QPGDWVLLLG 479


>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parabacteroides distasonis
           ATCC 8503]
          Length = 486

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 171/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KG
Sbjct: 1   MELRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V         G  S     V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AVAIVCEETPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSRKLMLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVDFGIFE 166
             +L      +      + +  N+I             PLTL  +         ++   E
Sbjct: 119 ATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + R ++ L      + T +   HL     +E    AK + F+ L        N
Sbjct: 179 VS-SHSIDQRRISGL-SFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ +  +   E +  ++ + G+  EV+ H
Sbjct: 237 ADDKSGLVMLQNTKAKK----LTYSLRTLADFKGKILESHFEGT--DLIINGR--EVMVH 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D  Y
Sbjct: 289 FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+GR I V+G      +  +      A  LS      V L
Sbjct: 345 AHTPDALTNVLNGIHEV-LDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLS----DQVIL 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D +                              GDV++V  K 
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|239636818|ref|ZP_04677820.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
 gi|239598173|gb|EEQ80668.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
          Length = 686

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 100/414 (24%), Positives = 178/414 (42%), Gaps = 9/414 (2%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G+D I    +    + ++ T+         IP   V D + A   LA+  R + K  +IA
Sbjct: 64  GNDLID---KSNPNVGLIITETYVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVIA 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS+GK++T+ +    L          G+ N    +   + ++  + DF + E  ++ +
Sbjct: 121 ITGSMGKSSTRMLTASLL-KDYPIQENRGNNNIRAAIYANMLKLIKNPDFAVIETSLNAI 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                 +  ++P IAVIT I  AH S F+ I+EIA  KA IF GL + G   +N D  F 
Sbjct: 180 NHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIINGDTMFA 239

Query: 233 ELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           + L  ++H        YS G S ++  +  +         +E+++ G+      +     
Sbjct: 240 DYLIDQAHQYTQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFSDG 299

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M  N L  + I+  L   V    + L  F P     K           TLID+++NA+  
Sbjct: 300 MISNTLAAILILKNLNIPVK--AEYLYNFEPFSKILKMKEIQTPTHKTTLIDDTHNASLP 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +M  AI      +   +G +I  LG + ++G  S+  H +L   LS  N  ++      +
Sbjct: 358 AMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYILCLDDDL 417

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYRLINLL 464
             + + + ++ H+ Y    + +   ++    +  VV++K SS    F  +   L
Sbjct: 418 RPVVNKI-KNKHITYYPNKELMINDLKYLCNEDSVVLLKSSSGGTQFSEVAKTL 470


>gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
 gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
          Length = 482

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 186/476 (39%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   +    +  + G++IDSR +   + F A++G   DGH +I  A+QKG
Sbjct: 1   MLLNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         S+  ++ +TG+ GKTT 
Sbjct: 61  ATAILC--EDIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVIESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSP--KGVTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKAS-DRVIITS 401

Query: 409 FHVLA------LKDALPR--SIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            +         + D L    +  +  + ++      I+++      GDV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halanaerobium praevalens DSM 2228]
          Length = 486

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/474 (20%), Positives = 176/474 (37%), Gaps = 45/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+ I         +  ++ I  DSR+I     F AI G   DGH +I  A++ G
Sbjct: 1   MQLNKILKNINYEIKAGNIKKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +++  +    +    I    V++    ++ LA         +  +I ITG+ GKTTT
Sbjct: 61  ATAIIIEKE--LEVYEKDITYLKVENSRQVMSILAKNFFDNPLKEIKLIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVD---------------VDFGIFE 166
             +L   L       A  G+ +N IG   L+  R   +               + +G+ E
Sbjct: 119 AYLLYKILQKYAGQAALFGTISNIIGSETLSSNRTTPESLDLYRYFAQMKKKGIKYGVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R     +    A+ T ++P HL     ++     K+ +F  L+      +N
Sbjct: 179 VSSHALDLYR--VESIDFEAAIFTNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKYAIIN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
            DD   E +K KS A       S+    K+AD    ++K   +Q+ +E +  GK +    
Sbjct: 237 ADDPNSEYIKKKSEAQN----LSYSLDTKSADLYTTEFKL--KQTGLEYKTGGKLVANFK 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G     N L  +    +L  + +   KAL+ F    G   R+        F LI +
Sbjct: 291 LNLGGLFNIYNSLAVVLTALVLGIEKNIIKKALADFDSVPG---RFEIIDQGQKFQLIVD 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISH 403
            Y   P +M+  +     I  +   + I + G   +     +     LAE       IS+
Sbjct: 348 -YAHTPDAMENILKAALNIKKN---KLIILFGCGGDRDRSKRPLMAALAEKYADSIIISN 403

Query: 404 VWLSGFHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKS 451
                     +   + +    +++      +   G+   I       D+V++  
Sbjct: 404 DNPRSESPTKIFKEIEKGFSSNFTNYSIIPDRKKGIKAAI-ELAKKDDLVLLLG 456


>gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 496

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/474 (23%), Positives = 210/474 (44%), Gaps = 30/474 (6%)

Query: 4   LWTFHDLLQAIQGHSIG--IVPQGFVNGISIDS----RSIA-PQEAFFAIKGPHY----- 51
           + + H LL  + GH +         +  +   S    R++      F  +          
Sbjct: 1   MTSIHSLLVDMDGHYLKKYGDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNR 60

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DG+      + K     V+ T+      S++ P F V+D    L +L+   R  
Sbjct: 61  KVVRWRDGN---EQIIGKENWFGVIVTEKPIMDPSVTTPQFIVEDSWKFLLELSAKLRSC 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITGS GKT+T+ M+T  L    K     G++N    VPL ++++  + D    
Sbjct: 118 FVNPVVAITGSAGKTSTRMMITHLLQEE-KVLENRGNHNVRFAVPLYMSKLLSNPDVLNL 176

Query: 166 ELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E+ ++ L       +++L++P IA++T+I  AHLS+    + +A  KA+IFEGL++ G  
Sbjct: 177 EVSVNALNSYDTGSMSNLIQPDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIA 236

Query: 224 FLNYD---DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +N D   + F  L+ A         +YS   +  A   +++  Q  E   + V   G+ 
Sbjct: 237 IINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRA-VFVKQISQKREYCEVLVSFFGED 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FF 339
           + +        M  N L  L +   L  ++   IK    F P     +R       G  F
Sbjct: 296 ILLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDF 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T ID+++NA+  SMK AI+    I P  +G ++ +LG + ++G+ ++  H  + E L+  
Sbjct: 356 TFIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQS 415

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +H++  G H   L +   +    + + +++  L   +++ L++  +V+ K S
Sbjct: 416 AATHIYGYGEHFKLLFEEGQKIDDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 469


>gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M6190]
 gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis ES14902]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELVGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
           391-98]
          Length = 491

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 161/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF   A    
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAEQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
                    +      + +PV  V D   +L  LA         K  +I ITG+ GKTTT
Sbjct: 57  -AAQGAAAIVAERPIDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++   + +       IG+ N  I              LTL +        +V+  + E
Sbjct: 116 SHIIDEIMRAHGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRMVEENVNSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +EE   AK  +F  L       + 
Sbjct: 176 VSSHALD--RGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E     + A    T+ ++G   ++D   +     S  +   +    +S
Sbjct: 234 KYAVLNNDDAATEAYIRSTAA----TVVTYGIDTHSDVMAKDIVMTSGGTTFTLVTPHES 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++    IG     N L       +    + T I  L       G   R+        +T
Sbjct: 290 KKITMKLIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAG---RFEVVDGGQDYT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  ++   Q +   +G    ++G     G+  ++    +A V + Y 
Sbjct: 347 VIVD-YAHTPDSLENVLTTAKQFA---KGNVYCIVGC---GGDRDRTKRPIMAGVATEYA 399

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S         A+ D +   +  +  E             S     DV+++  K 
Sbjct: 400 THAILTSDNPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKG 459


>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
 gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
          Length = 486

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 172/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KG
Sbjct: 1   MELRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V         G  S     V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AVAIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVDFGIFE 166
             +L      +      + +  N+I             PLTL  +         ++   E
Sbjct: 119 ATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + R ++ L      + T +   HL     +E    AK + F+ L        N
Sbjct: 179 VS-SHSIDQRRISGL-SFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ +  +   E +  ++ + G+  EV+ H
Sbjct: 237 ADDKSGLVMLQNTKAKK----LTYSLRTLADFKGKILESHFEGT--DLIINGR--EVMVH 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D  Y
Sbjct: 289 FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+GR I V+G      +  +      A  LS      V L
Sbjct: 345 AHTPDALTNVLNGIHEV-LDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLS----DQVIL 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D +          V                   GDV++V  K 
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
 gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 496

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 168/477 (35%), Gaps = 54/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++   I+  +        + G+ +DSR + P + +  + G + DGHDF   A+ +GA 
Sbjct: 11  LSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAA 70

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            ++V       I  L IP   V  V   +  LA        +K  ++ +TG+ GKTT   
Sbjct: 71  ALLVER-----ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEVVGVTGTNGKTTITY 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVD-----VDFGIFELG 168
           ++    +   K    IG+    I              + L ++  +     V   + E+ 
Sbjct: 126 LVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVS 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225
              L   R           + + +   HL     +EE   AKA++F GL   ++     +
Sbjct: 186 SHALVFGRVT--GCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVV 243

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD   E L   S A     + ++G + +  D++       ++     V+ +G   +V 
Sbjct: 244 NGDDPAAETLIRLSAA----PVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGGESQVE 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +   G     N L                 +AL+      GR +  R     G    I  
Sbjct: 300 YSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRM----GQPFQIIV 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++   +V        +GR I V G     G+  +     +  +    +  HV
Sbjct: 356 DYAHTPDGLE---NVCRTAQEFTQGRLITVFGC---GGDRDKGKRPQMGAIAEELS-DHV 408

Query: 405 WLSGFHVLA------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
            ++  +         ++D L     + Y+  ++             +GD V++  K 
Sbjct: 409 IVTSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKG 465


>gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
          Length = 504

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 170/478 (35%), Gaps = 47/478 (9%)

Query: 11  LQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++AI G  +          V G+  DSR +   + F A+KG   DG+ FI  A+++GA  
Sbjct: 4   VEAISGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAA 63

Query: 68  VVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           ++ ++    +      P   V  V+    AL +++ A   R      + A+TG+ GKTTT
Sbjct: 64  IITDSAETFAALRERQPELAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             +L   L S+ +    +G+   HIG  +  +                         + E
Sbjct: 124 AFLLEQMLRSVGRKSVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVME 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIF 224
           +    L +       +   +A+ T +   HL     +E    AKA IF G+         
Sbjct: 184 MSSHALEQ--ERVWGLPVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRVAV 241

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N D  + + +    H     T+ ++G  +  +++          +  +       + + 
Sbjct: 242 INLDSEYGDEM---CHEFRGATLMTYGMGEFGNYRAENVSLALGDTRFDFVTPEGRIAMH 298

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G    +N+L            ++    A  + H   GR +    +   GFF ++D 
Sbjct: 299 SPLSGRVNVENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVD- 357

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y     +++  I++  +      GR I + G     G+  ++    +       +   V
Sbjct: 358 -YAHTDDALRNLIALARESVVGHGGRAITLFGC---GGDRDKTKRPKMGRAAGEDSDLVV 413

Query: 405 WLSG-----FHVLALKDALP--RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
             S        +  + +AL   R     +   E           S   GD+V++  K 
Sbjct: 414 VTSDNPRSEEPMTIINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKG 471


>gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M04-240196]
          Length = 492

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 160/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      +      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha153]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
 gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
          Length = 495

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 170/477 (35%), Gaps = 54/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++   I+  +        + G+ +DSR + P + +  + G + DGHDF   A+ +GA 
Sbjct: 10  LSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAA 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            ++V       I  L IP   V  V   +  LA        +K  ++ +TG+ GKTT   
Sbjct: 70  ALLVER-----ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEVVGVTGTNGKTTITY 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVD-----VDFGIFELG 168
           ++    +   K    IG+    I              + L ++  +     V   + E+ 
Sbjct: 125 LVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVS 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225
              L   R           + + +   HL     +EE   AKA++F GL   ++     +
Sbjct: 185 SHALVFGRVT--GCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVV 242

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD   E L   S A     + ++G + +  D++       ++     V+ +G++ +V 
Sbjct: 243 NGDDPAAETLIRLSAA----PVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVE 298

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +   G     N L                 +AL+      GR +  R     G    I  
Sbjct: 299 YSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRM----GQPFQIIV 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++   +V        +GR I V G     G+  +     +  +    +  HV
Sbjct: 355 DYAHTPDGLE---NVCRTAQEFTQGRLITVFGC---GGDRDKGKRPQMGAIAEELS-DHV 407

Query: 405 WLSGFHVLA------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
            ++  +         ++D L     + Y+  ++             +GD V++  K 
Sbjct: 408 IVTSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKG 464


>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 178/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   +    +  + G++IDSR +   + F A++G   DGH +I  A+QKG
Sbjct: 1   MLLNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         S+  ++ +TG+ GKTT 
Sbjct: 61  ATAILC--EDIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVIESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSP--KGVTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKAS-DRVIITS 401

Query: 409 F------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         +LA  DA                          GDV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLDA-EDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis OX99.30304]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 162/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea
           DSM 7271]
          Length = 486

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 162/474 (34%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I   +   V    +  +  DSR       F AI G   +GH++I  A++ G
Sbjct: 1   MNLKTLLKNITIKTSLYVEDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V        +  +S  V        AL           K  ++ +TG+ GKTT   
Sbjct: 61  ATAIVCEQLPQQPLPGVSYIVVPNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGI--FELGMS 170
           +L        +    + +   ++      A             + + V+ G+    + +S
Sbjct: 121 LLYQLFRKAGQKAGLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  ++    + T +   HL            K   F+ L  T    +N DD 
Sbjct: 181 SHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   + A       ++    +AD++    +   +   + +       EV    IG 
Sbjct: 241 NGAFMLQNTKAQKK----TYALKTHADYKAYIIESRFDGLLLRIN----QHEVWTKLIGE 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L      ++L+ D   A+  +S   P  G   R++ A++      I + Y   P
Sbjct: 293 FNAYNLLAVYATATLLSIDEIEALTLISAIEPVAG---RFQYAVSATGVITIVD-YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +  ++ I  H E     V+G      +  +    D+A  LS     +V L+   
Sbjct: 349 DALENVLKTINDIRTHNET-LTTVVGCGGNRDKGKRPIMADIATTLS----DNVILTSDN 403

Query: 409 ---FHVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVDGDVVVV--KS 451
                   +   + + +   Y   +            +  +   GD++++  K 
Sbjct: 404 PRNEEPETILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKG 457


>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 486

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 164/477 (34%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+  I    I       +  + IDSR +     + A++G   DGH FI  A++KG
Sbjct: 1   MIITELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV     +    + ++    V D   AL  LA         K  +I +TG+ GKT+ 
Sbjct: 61  AAAVVCEE--LPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKTSV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             +L     ++    A + +    IG             +T+ R+  +      +F   E
Sbjct: 119 STLLFDVFKNLGYPAALLSTVEIRIGEEIIPATHTTPDVITINRILAEAVEKGCEFAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     +   IA  T +   HL      EE    K   F+ LE T     N
Sbjct: 179 VSSHGIAQNRI--EGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDELEDTAIAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       S+     AD+  +  +       M +   GK       
Sbjct: 237 VDDKNGNVMLQNTKAKKK----SYALKTMADYHGKLLEVDFNG--MLLNFNGKEF--WTT 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+L+  GI + L  + D  ++A+S      G   R+    + G    I + Y
Sbjct: 289 LTGKFNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSG---RFETFKSDGGIFFIVD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  ++ I    E R I V G     G+   S   ++  + +  +   +  
Sbjct: 345 AHTPDALENILDSINDIRTKNE-RLITVFGC---GGDRDHSKRPEMGNIATKKSTLAIIT 400

Query: 407 SG--------FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  ++  +       Y                    D+V+V  K 
Sbjct: 401 SDNPRTEDPTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKG 457


>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
 gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
          Length = 483

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 181/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   I       + GI+IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++        +    I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILCEDMPEKPVEG--ITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL R+          +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ L K      N
Sbjct: 179 VSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ R  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  G   R+    ++   T I + Y
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAG---RFDAVRSKDGVTAIVD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALTNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
           S        +D +   +    +E M            I+++      GDV+++  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKG 457


>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
 gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
          Length = 486

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/481 (20%), Positives = 178/481 (37%), Gaps = 58/481 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KG
Sbjct: 1   MELRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V         G  S     V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AVAIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVDFGIFE 166
             +L      +      + +  N+I             PLTL  +         ++   E
Sbjct: 119 ATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + R ++ L      + T +   HL     +E    AK + F+ L        N
Sbjct: 179 VS-SHSIDQRRISGL-SFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ +  +   E +  ++ + G+  EV+ H
Sbjct: 237 ADDKSGLVMLQNTKAKK----LTYSLRTLADFKGKILESHFEGT--DLIINGR--EVMVH 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D  Y
Sbjct: 289 FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P ++   ++ + ++   G+GR I V+G      +  +      A  LS   I     
Sbjct: 345 AHTPDALTNVLNGIHEV-LDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVILTSDN 403

Query: 402 ------SHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
                   +    ++G   + ++ AL  +      +T   L          GDV++V  K
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLA-------KKGDVILVAGK 456

Query: 451 S 451
            
Sbjct: 457 G 457


>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
 gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
          Length = 482

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 179/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLLQ IQ   I       + G++IDSR I     F A++G   DGH +I  A+ KG
Sbjct: 1   MRLSDLLQTIQPVRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+     +       I    V D   A+ K+         SK  +I +TG+ GKTT 
Sbjct: 61  AVAVLCEE--LPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L             + +  N+I             P+TL R+  +       +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ L K      N
Sbjct: 179 VSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G+  ++D  Y
Sbjct: 289 FIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKESARLSDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETMDGLF------LFIQSSL---VDGDVVVV--KS 451
           S        +D +   +     + M            I+++      GDV++V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 457


>gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parasuis SH0165]
 gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           SH0165]
          Length = 496

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 172/488 (35%), Gaps = 54/488 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPL +F                   +N +++DSR +   + F A+KG   DG  FI  A
Sbjct: 1   MNPLLSFF-------PELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53

Query: 61  VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATII 111
           +++GA LV+   D             + +  V  V ++   L+ +A A       K T++
Sbjct: 54  IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------------- 158
            ITG+ GKTTT ++     + +    A +G+  N +   +  A                 
Sbjct: 114 GITGTNGKTTTAQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANF 173

Query: 159 ---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                DF   E+    L + R     +   +A+ T ++  HL   + +EE A AK  +F 
Sbjct: 174 VELGADFCAMEVSSHGLAQYR--AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFG 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            L       +N DD       AK   A+ + T   F   +    + +  +   + + +E 
Sbjct: 232 ELSSKQQ-VINADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEF 290

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +    + E+    IG     N+L     +  L  D+   ++   + +   GR +      
Sbjct: 291 ESSWGNGELKSRLIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEE 350

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N     ++   Y   P +++ A+        H EG    V G   +     +     +AE
Sbjct: 351 NAEESPMVIVDYAHTPDALEKALDA---ARLHCEGELWCVFGCGGDRDTGKRPLMARIAE 407

Query: 395 VLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            L+      V ++  +            +     +   V              +     D
Sbjct: 408 QLA----DRVIVTDDNPRTEDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILIAGKG 471


>gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 478

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 164/474 (34%), Gaps = 56/474 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I            +  ++ DSR I     F AI G  +DGH FI  A+  G
Sbjct: 1   MNLTDILDKINYIDYTKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFIDKAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +VV  D+        I    V D   AL +++  V      K  +I +TG+ GKTTT
Sbjct: 61  ANTIVVTEDV---TEIDDINYIKVKDSRVALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFE 166
             M++  L  +      IG+    I                        +   +D  + E
Sbjct: 118 ASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L   R     +   +AV   ++  H+     +E    AK  +FE  +K      N
Sbjct: 178 CSSHGLYLHRL--DGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IAN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +    KA+         Y+F     +DF+    +    +   E+    K+++ V +
Sbjct: 233 VDDEYGRKAKARFEDA-----YTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N +  +  V++L  ++    K+L  F   E    R+    N+    ++ + +
Sbjct: 284 RFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEA---RFEFVKNEMGINIVID-F 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P + +     +       + R+IAV G M   G+ +     ++ ++ +  N+  V  
Sbjct: 340 AHTPKAFENIYKSV-----PNDKRKIAVYG-M--SGDRTSEIRHEVGKISAENNVFSVVT 391

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +        + +           +      +              +GD V++  
Sbjct: 392 TDDPKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLG 445


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 173/479 (36%), Gaps = 50/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I    +    +  ++GI  +S+ IAP   F A KG  +DG  +I  A+  G
Sbjct: 1   MKLKKVLKDIPVVQVKGSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V +    +      I    V +V G  +          +  I+ ITG+ GKTTT  
Sbjct: 61  ATAIVTDIYDPSFKEITQIICKNVAEVEGRFSA-NFYQMPSQELFIVGITGTNGKTTTSF 119

Query: 125 MLTIALSSIKKTYACIGSY--------------NNHIGVPLTLARMPVD--VDFGIFELG 168
           ++   L  +      IG+                  +     + R  V       + E+ 
Sbjct: 120 LVKYLLEQLNLPCGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEVT 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTI 223
              L + R     +   IA+ T +   HL     +E  A+AK ++F  L     +K+  I
Sbjct: 180 SHALDQKR--VEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQI 237

Query: 224 FLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             N D  +FE +       GIKT I++FG    AD +          + +++  QG+S  
Sbjct: 238 IANLDCPWFETILK-----GIKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHYQGRSYS 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG     N L  + +       ++  I     F P  GR +  +  L+   F   
Sbjct: 293 TFFPLIGRFNIYNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLFV-- 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              +     ++  A+  LS++    +G+ I V G     G+  ++    +A+  + ++  
Sbjct: 351 --DFAHTEDALYKALECLSELK---KGKIITVFGC---GGDRDKTKRPKMAQASASFSDL 402

Query: 403 HVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S           +  + +      +            F       GD+++V  K 
Sbjct: 403 TIVTSDNPRSEDPLKIIQEIAEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKG 461


>gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelagibaca bermudensis HTCC2601]
 gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. HTCC2601]
          Length = 494

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 171/460 (37%), Gaps = 35/460 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73
           G +        V GIS+DSR++ P   F A+ G    G  FI  A+ +GA  V+ + +  
Sbjct: 12  GLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGAVAVLTDAEGA 71

Query: 74  --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
               A++    + +    +   AL            AT++A+TG+ GKT+    +     
Sbjct: 72  RLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVASFVRRLWQ 131

Query: 132 SIKKTYACIGSYN----------NHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFL 178
            +      +G+            +    P+TL +   +      E   +  S  G  +  
Sbjct: 132 ELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHGLDQRR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKA 237
              V+   A  T     HL   +  EE  +AKA +F   L + GT  +N DD+    + A
Sbjct: 192 LDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGIDMLA 251

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A G + + + G+S+ AD +L   +  +    + +   G   ++  + IG    QN L
Sbjct: 252 IARARG-QEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQNAL 310

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+V    A+ +   +AL       G   R + A  +     +   Y   P ++  AI
Sbjct: 311 VAAGLVIACGAEAEDVFRALPRLETVHG---RMQLAATRDSGAAVYVDYAHTPDAVATAI 367

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             L    PH  GR IA++G     G+        +    +  N   V ++  +  +    
Sbjct: 368 KALR---PHVMGRLIAIVGA---GGDRDAGKRPLMGRAAAE-NADLVIVTDDNPRSEDPA 420

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 L  +             L     L  GD ++V  
Sbjct: 421 AIRAQVLEGAPEATEVGDRAEAILRGVDLLQPGDALLVCG 460


>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 482

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 179/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLLQ IQ   I       + G++IDSR I     F A++G   DGH +I  A+ KG
Sbjct: 1   MRLSDLLQTIQPVRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+     +       I    V D   A+ K+         SK  +I +TG+ GKTT 
Sbjct: 61  AVAVLCEE--LPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L             + +  N+I             P+TL R+  +       +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ L K      N
Sbjct: 179 VSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G+  ++D  Y
Sbjct: 289 FIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKESARLSDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETMDGLF------LFIQSSL---VDGDVVVV--KS 451
           S        +D +   +     + M            I+++      GDV++V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 457


>gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 494

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 164/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L + I+   +       V  I+ DSR+ +    F A KG   D H F  + V +G
Sbjct: 1   MNANELFEKIRVKQVIGTLDINVTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A ++VVN     +     +    V D L   +L    +      + T I +TG+ GKT+ 
Sbjct: 61  AKVIVVNHQQDINGD---VTQVIVPDTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFE 166
             M+ +    + K  A +G+    I    T                   +  + +    E
Sbjct: 118 ATMIHLIYRGLGKGSAYLGTNGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    E L K   
Sbjct: 178 VSSHGLSLGRL--RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD F + L + +       I+++G   +A F  +  ++  +    +      +  
Sbjct: 236 AVLNNDDDFSKYLASVTPY----EIFTYGIDHDAQFMAKNIQESLQGVHFDFDTPIGTYS 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N++  +  V      ++  ++ +    P EG   R           LI
Sbjct: 292 VKTPYVGKFNISNIMAAMIAVWSKGTSMEDIVRVVENLEPVEG---RLEVLDPSLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y      M   I     + P  + + I ++G M   GE   +   ++  V       
Sbjct: 349 ID-YAHTADGMNKLIDA---VKPFVKQKLIFLIG-MA--GERDLTKTPEMGAVA--CRAD 399

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V  +  +           +    + H HY   +               GD VV+  K 
Sbjct: 400 YVIFTPDNPANDDPKMLTAELAKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID18]
 gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
          Length = 492

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 523

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 166/389 (42%), Gaps = 27/389 (6%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LV++    + S    +I      D    L +           +II ITGS GKT+ K +L
Sbjct: 146 LVILLCAWILSPLETAIRNHYASDAQRLLQEHG-------DLSIIGITGSYGKTSVKTIL 198

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              LS +  T    GSYNN +G+ LT+  ++    +  + E+G  H+ EI  L   V+P 
Sbjct: 199 NELLSGVYYTLMTPGSYNNQMGITLTIRTKLQHLHEVFLCEMGADHVREIHDLMQFVKPR 258

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+T++ P HL+ F  ++ I   K ++ E L   G  F+N D+++ +    K+      
Sbjct: 259 YGVVTSVGPQHLATFGSMDNILHEKMQMIECLPLDGIGFVNRDNAYIQSYTIKNKC---- 314

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I  FG  ++AD++    +   E +   V  + +        +G H   N+   + +   
Sbjct: 315 HIVWFGMHESADYRCSNIRYSEEGTSFTVTAENQEHSFHTRLLGKHNVVNITCAIAVAHT 374

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +    A+      E     +R  + + F TL+D++YN+NP   + A+ V+ Q+  
Sbjct: 375 LGISWEIMALAVEKLPYVE-----HRLQVRKSFCTLLDDAYNSNPEGARCALEVIKQM-- 427

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPR---- 420
             + +R  +     E+GE  +     L + ++  ++    L G     ++   L      
Sbjct: 428 --KHKRFIITPGFLELGEKQEEEQYTLGQEIAD-SVDVALLVGRIQTKSIVKGLQARQFP 484

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +++  ++       +Q      D V++
Sbjct: 485 AQNIYICDSFQEALSIVQKQADPQDCVLL 513


>gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 491

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 157/482 (32%), Gaps = 50/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               +LL       +       +  G  +D+  + P   + A+ G    G + +  A+ +
Sbjct: 1   MKLSELLYGHDHQVLHGDQDTPITSGPCLDADRVTPGSLYVALPGHRAGGPEALGEALAR 60

Query: 64  GAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           GA  V+V                V  V D   A   ++            ++A+TG+ GK
Sbjct: 61  GAAAVLVEGPDPAGHRPADTGACVVRVPDARIATALVSARYHGEPGRAMDVVAVTGTNGK 120

Query: 120 TTTKEMLTIALS-SIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGIFELGMSHLG 173
           T+   M    L+ S       IG+         I +P ++   P   D       M   G
Sbjct: 121 TSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSVLSTPESPDLQYLLACMRDRG 180

Query: 174 EIR------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                                   + V T +   HL +   +E    AK  +F+G+ +  
Sbjct: 181 GDSVVLEATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTRAKMLLFQGMCRR- 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     + A    L    + ++    +AD++       S  +   +   G+  
Sbjct: 240 -AVVNADDPVGAAIPA----LMPGAVTTYAVDADADYRATDLVVDSSGTRFVLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L  +    +L  D+D  + AL       GR + +     +G   +
Sbjct: 295 PAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEHF--GTPEGVSVI 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y  +P S+   +  +   +P    R + V G     G+   +    + E+ + Y+ 
Sbjct: 353 VD--YAHSPDSLDKVLCTIRGFAP---RRVLTVFGC---GGDRDTTKRARMGEIAATYSD 404

Query: 402 SHVWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V  S         A+ D +   I              G      SS   GDVV+V  K
Sbjct: 405 LCVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLVAGK 464

Query: 451 SS 452
            S
Sbjct: 465 GS 466


>gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI18]
 gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID1]
 gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID24-1]
 gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 162/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AIINVDDEYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
 gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 168/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I   ++       +  I+ DSR +     F A+ G   DGHD+I  A+  G
Sbjct: 1   MLLSDILYNISLITVSGKTDIEIEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+   +++  +    +    V++   ++             + T++ +TG+ GKT+ 
Sbjct: 61  ASAVLC--EVLPKMLEEEVTYIQVENSAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELG 168
             +L      +      I +  N I              +TL  +  ++         + 
Sbjct: 119 ATLLFKLFRKLGYKCGLISTVQNQIEDEIIPATHTTPDSITLNALLHEMHQKGCAFVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++     +     + T I   HL      +E   AK   F+ L  T     N D
Sbjct: 179 VSSHSVVQGRISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDALPSTAFALTNVD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   +++   + A      +S+     ADF+ +      +     +Q++    EV    I
Sbjct: 239 DRNGKVMLQNTKAEK----HSYSLKNIADFKGK----VLDCGLFGLQMEIDKQEVWFKLI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L  + +  +  LS   P  GR +  +   +Q    ++D  Y  
Sbjct: 291 GQFNAYNLLAVYGAAVLLEENPENILTELSQLTPPPGRFE--QVISSQQTVGIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  +  ++ +    E R I V+G      +  +     +A  LS      V L+ 
Sbjct: 347 TPDALKNVLETINGLRQGHE-RVITVVGCGGNRDKGKRPLMAGIACELS----DTVILTS 401

Query: 409 FHVLA------LKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         LKD      + +   V              +     D+++V  K 
Sbjct: 402 DNPRFEEPEDILKDMEAGIPITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKG 457


>gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Neisseria meningitidis H44/76]
 gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis CU385]
 gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis H44/76]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  + G+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELVGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAVRYAVEQAAANDIILIAGKG 464


>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 502

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/413 (21%), Positives = 144/413 (34%), Gaps = 43/413 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+ I G          +  +  DSR I P   F  + G H DGHD+   A++ GA  +V
Sbjct: 11  ILKTITGSL-----SVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYAEQAIRNGAVAIV 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
              +   S  S ++ +  V D    L     A       +  +I ITG+ GKTTT  M+ 
Sbjct: 66  AERE--LSGLSENVTLITVPDTRRILPILANAFYGDPTQRLKLIGITGTNGKTTTTHMVD 123

Query: 128 IALSSIKKTYACIGSYNNHI---------GVPLTLARMPVDV-------DFGIFELGMSH 171
             L+  ++    IG+    I           P T+  M           ++G+ E+    
Sbjct: 124 KILNDARRKTGIIGTLYMKIGNHAEKTLNTTPDTIQLMRYFHTMISHGGEYGVLEVSSHG 183

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----GTIFLN 226
           L   R           V T ++  HL     +E   + K  +F  L  +         LN
Sbjct: 184 LDMGR--VRGCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQLGNSNRDMLKKAVLN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++ A     I ++G    AD +        E      +    S EV   
Sbjct: 242 ADDDASSYYAKRTSA----QIITYGIQNQADVRATHIHHTREGCAFHAETPWGSSEVNLK 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +    +    ++   ++L  F    GR +  +     G        Y
Sbjct: 298 VHGAHNIYNALAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTGRRFGVVV----DY 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             NP  +KA +     I+    G+ I V+G   E     +    D+A   + Y
Sbjct: 354 AHNPDGLKATLQSAKAITS---GKMICVMGCRGERDRSKRPIMADIASSYADY 403


>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 486

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 170/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+  +   S+       V  I  DSR +     F A++G   DGH FI   +QKG
Sbjct: 1   MQIKDLIYKVSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV          +    +  V D   AL  +A        SK  ++ +TG+ GKTTT
Sbjct: 61  ATAVVCEELPEIESTADC-TIIQVKDSAEALGMIASNFYDSPSSKLKLVGVTGTNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L      +      + +  N I              ++L ++  D           E
Sbjct: 120 VTLLYRLFRKLGYKTGLLSTVENIIEDKVVQATHTTPDAISLNKLLADMVKAGCTHCFME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH    R +  L +    + + I   HL      +E   AK   F+GL       +N
Sbjct: 180 VS-SHAAVQRRIAGL-QFAGGLFSNITHDHLDYHKTFDEYIKAKKLFFDGLPNDSFALIN 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A      Y++     ADF+ +      +   M+V      ++    
Sbjct: 238 SDDKRGRVMIQNTRA----KTYTYSLLALADFKGKLISTTMQGLEMDVD----GIQAWFR 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L       +L  D +  +  LS      G   R+   ++    T+I + Y
Sbjct: 290 LIGNFNAYNLLAVYATAVLLGEDKEEVLMQLSTIEAANG---RFEQQISATRITVIVD-Y 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++K  +  ++++      + I V+G     G    +    +A++   ++  HV L
Sbjct: 346 AHTPDALKNVLETITELKGAN--KIITVVGC---GGNRDAAKRPVMADIACQFS-DHVVL 399

Query: 407 SG-----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+   + + + +   +                +    GD+++V  K 
Sbjct: 400 TSDNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILVAGKG 457


>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
 gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
          Length = 482

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 175/477 (36%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+AIQ   I       + G++IDSR I     F A++G   DGH +I  A++KG
Sbjct: 1   MKLSDLLKAIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTT 122
           A  ++   +         I    V D   A+ K          SK  ++ +TG+ GKTT 
Sbjct: 61  AVAILC--EEWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L             I +  N+I             P+TL R+  +       +   E
Sbjct: 119 ATLLYDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ + K+     N
Sbjct: 179 VSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEMPKSAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDRNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVR 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G+  ++D  Y
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVLSL 398
              P ++   ++ +  +   G+G+ I V+G            M + S      +      
Sbjct: 345 AHTPDALVNVLNAIHGV-LEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITADN 403

Query: 399 YNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    ++       KD + ++I +                   GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDKDDIQKTISI---ADRREAIKTACMLAQPGDVILVAGKG 457


>gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID332]
 gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
 gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   +G++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae NCCP11945]
 gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 162/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei
           VT8]
 gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter aquaeolei VT8]
          Length = 494

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 166/479 (34%), Gaps = 49/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   LLQ I    +  V    ++G+  DSR + P +AF A+ G       ++  A+  
Sbjct: 3   ITSISTLLQGI--IEVPSVFDVTIHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISA 60

Query: 64  GAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  +++            G+L +PV G+   LG +              +I +TG+ GK
Sbjct: 61  GATAILLESEQERQCHERHGALIVPVVGLRARLGRIADRFFEH-PSRHLRVIGVTGTNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFG 163
           T+  + ++  L         +G+    +   +  A                         
Sbjct: 120 TSVTQYISQLLRETGTPCGLLGTLGYGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAA 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L + R     +    AV T +   HL     +E    AKA +F   E+    
Sbjct: 180 VMEVSSHALDQGR--VDNLTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLR-EELHFS 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N+DD F   L  +      +  YS  +++  +  L+++   +      V  Q    ++
Sbjct: 237 VINFDDPFGRQLYGQLEGQCDRVRYSLHEAQT-ELWLKEFTPTASGFRARVDGQWGEFDL 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   A N+L  L  V  L   V+ A+  +    P  GR +R+  +  +       
Sbjct: 296 TVPLLGSFNASNVLAALATVLTLGVPVERAVSVVRELSPPPGRLERFTGSTGKHVVV--- 352

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++  A+  L    PH  GR I V G     G+       ++A+        +
Sbjct: 353 -DYAHTPDALANALEALR---PHTRGRLICVFGC---GGDRDPGKRPEMAKEAEKR-ADY 404

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +     ++                     + D+V++  K 
Sbjct: 405 VIVTDDNPRTEQPERIVSDISAGFTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKG 463


>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
 gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
          Length = 486

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 171/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KG
Sbjct: 1   MELRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V         G  S     V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AVAIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVDFGIFE 166
             +L      +      + +  N+I             PLTL  +         ++   E
Sbjct: 119 ATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + R ++ L      + T +   HL     +E    AK + F+ L        N
Sbjct: 179 VS-SHSIDQRRISGL-SFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ +  +   E +  ++ + G+  EV+ H
Sbjct: 237 ADDKSGLVMLQNTKAKK----LTYSLRTLADFKGKILESHFEGT--DLIINGR--EVMVH 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D  Y
Sbjct: 289 FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+GR I V+G      +  +      A  LS      V L
Sbjct: 345 AHTPDALTNVLNGIHEV-LDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLS----DQVIL 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D +                              GDV++V  K 
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 499

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 96/420 (22%), Positives = 158/420 (37%), Gaps = 39/420 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+  ++  + G   Q  + G+  DSR I     F AIKG   DGH +I  A+++G
Sbjct: 1   MTLAELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV+  +     G   +    VDD   AL +LA         K  +I +TG+ GKTTT
Sbjct: 61  AVAVVLAQERTLPPGVAWV---RVDDTRLALGQLAARFYDYPSRKLRLIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             ++   L +  +    +G+  N +G  +  A                         + E
Sbjct: 118 THLIQAILEAGGRPAGLVGTIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARAVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----G 221
           +    L   R         +AV T +   HL     +E+  + KA +F+GL++       
Sbjct: 178 VSSHALALHR--VAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPK 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD +   L A +       + ++G +     + R     +  S   V   G   
Sbjct: 236 YAVINGDDPYGSRLAALTPV----PVVTYGCTPGCQVRARDIHLETGGSTSLVTWPGGEA 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G +   N L  L +      D   AI+AL  F    GR +R     +QG    
Sbjct: 292 AMELRLTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGRLERV----DQGQPFT 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P  ++  +    Q++    GR + V G   +     +      A  LS Y+I
Sbjct: 348 VVVDYAHTPDGLENVLRAARQVT---RGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSI 404


>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
 gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
          Length = 496

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 173/488 (35%), Gaps = 54/488 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPL +F                   +N +++DSR +   + F A+KG   DG  FI  A
Sbjct: 1   MNPLLSFF-------PELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53

Query: 61  VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATII 111
           +++GA LV+   D             + +  V  V ++   L+ +A A       K T++
Sbjct: 54  IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------------- 158
            ITG+ GKTTT ++ +   + +    A +G+  N +   +  A                 
Sbjct: 114 GITGTNGKTTTAQLFSQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANF 173

Query: 159 ---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                DF   E+    L + R     +   +A+ T ++  HL   + +EE A AK  +F 
Sbjct: 174 VELGADFCAMEVSSHGLAQYR--AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFG 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            L       +N DD       AK   A+ + T   F   +    + +  +   + + +E 
Sbjct: 232 ELSSKQQ-VINADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEF 290

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +    + E+    IG     N+L     +  L  D+   ++   + +   GR +      
Sbjct: 291 ESSWGNGELKSRLIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEE 350

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N     ++   Y   P +++ A+        H EG    V G   +     +     +AE
Sbjct: 351 NAEESPMVIVDYAHTPDALEKALDA---ARLHCEGELWCVFGCGGDRDTGKRPLMARIAE 407

Query: 395 VLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            L+      V ++  +            +     +   V              +     D
Sbjct: 408 QLA----DRVIITDDNPRTEDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILIAGKG 471


>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
 gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
          Length = 507

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 100/492 (20%), Positives = 167/492 (33%), Gaps = 59/492 (11%)

Query: 5   WTFHDLLQAIQ---GHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               +LL A++    H  G   +  Q  + G++ DSR  AP   F A+ G H DG  ++ 
Sbjct: 1   MQLKNLLAALEQPPTHIYGANTLPEQDTILGLAYDSRKAAPGYLFIAVPGVHTDGRRYVA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGS 116
            A Q GA  VV     + S   L IP   V+DV  AL  L  A       +   I +TG+
Sbjct: 61  DAAQHGA--VVALGAPLPSAIDLPIPYIEVEDVRTALADLACAFYGFPARELCTIGVTGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI---------FEL 167
            GKTTT  +++    +  +    + + N  +                +          E+
Sbjct: 119 DGKTTTSNIISTLFDAAGRRTGMMTTANFKLNGQEWANATRQSTLEALEIQEFLRKMVEM 178

Query: 168 GMSHLGEIRFLTHLVR--------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             +H   I   +H +           + V+T I   HL     ++    AKA +FE L+ 
Sbjct: 179 QATHA-VIESTSHGLELQRVRGCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDP 237

Query: 220 T--------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                        LN DDS +E+LK          I  +G   +A  +       + ++ 
Sbjct: 238 EQDKGQGYRKVAILNKDDSSYEVLKPYCRV----PILDYGIETDAAVRAVDLHLQASRTA 293

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             + L     ++    IG     N L  +         +D   + L+      GR +   
Sbjct: 294 FRLILPDAECQIETPLIGRFNVSNCLAAIATAYSQGIPLDVITQTLATIKGVPGRME--H 351

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               Q F  ++D  Y     S++  +++L    P   G+ + V G   E     +     
Sbjct: 352 IDEKQNFSVIVD--YAHTADSLQKVLAILR---PVTTGKLMVVFGSAGERDRQKRPVMGS 406

Query: 392 LAEVLSLYNI----------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           +A  +S + +              L    V A +                       S  
Sbjct: 407 VAAQMSDFFVITDEDPRDEDRESILREIAVGAEQAGKQEGSDFLCIADRREAIATAFSRA 466

Query: 442 VDGDVVVV--KS 451
             GD V++  K 
Sbjct: 467 QPGDTVLLAGKG 478


>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 169/481 (35%), Gaps = 57/481 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL  +   ++       + G++ DSR + P   F  + G   DGH F   AV+ GA 
Sbjct: 3   LRDLLMPLLPVTVSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            V+   D+      +   +  V D   A+  L   +      +  +I +TG+ GKTTT  
Sbjct: 63  AVLSEQDL-----DVPATIVKVPDTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFELG 168
           ++   L    K    IG+ +  I              + L R       V+ D+ I E+ 
Sbjct: 118 LIDKILRDQSKQTGLIGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L   R        H AV T +   HL     +E    AK+ +F  L          T
Sbjct: 178 SHALELGR--VRGCEIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKT 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN DD   EL    + A     + ++G  + AD + ++ +  S+ +   V+    S  
Sbjct: 236 AVLNADDEASELYATVTPA----RVITYGIDQPADVRAKQIEITSKGTSFTVESFAGSAR 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N L  + +       ++      +      G   R+        F ++
Sbjct: 292 LNLRLMGKFNVYNALAAIAVTLAEGIPLEAIK---ASLEEVAGVNGRFEAVDAGQPFAVL 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y+  P S++ A+  + + +    G    ++G     G+  ++    +A++ + Y   
Sbjct: 349 VD-YSHTPDSLENALMTVKEFA---RGNVFCIVGC---GGDRDRTKRPIMAQIATKYADL 401

Query: 403 HVWLSG----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V  S         A+ D +   +                      S     DV+++  K
Sbjct: 402 TVLTSDNPRSEEPQAILDDMLAGLSEVAPDRYTALTDRREAIAHAVSLAKPDDVILIAGK 461

Query: 451 S 451
            
Sbjct: 462 G 462


>gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis Z2491]
 gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           Z2491]
 gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240013]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 160/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S+ AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
 gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
          Length = 495

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/485 (17%), Positives = 159/485 (32%), Gaps = 57/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + +    +       + GI  DSR + P + F  + G   DGH +   A  KG
Sbjct: 1   MRLSELAELLITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A   VV  ++      L  P   V D   A+            +   +I +TG+ GKTTT
Sbjct: 61  AVAFVVEREL-----ELDAPQLIVKDSRLAMAVLADHFYGHPSNALHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVD-VDFGIFE 166
             ++   L+   +    IG+                   + +   L+ M  +   +   E
Sbjct: 116 TYLIEQILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSDMRKEGTAYCAIE 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R      R   AV T +   HL     +E+ A+AK   F  L        E
Sbjct: 176 VSSHALEQGR--VKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRLGNEYAAKAE 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 LN DD   E     + A     + ++G   +AD +    +  ++ +   V    
Sbjct: 234 DRAYAVLNVDDPVSEQFAKLTAA----EVITYGIDNHADVRASNIRISAQGTTFRVSTFR 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++    +G     N L  +    I    ++      +      G   R         
Sbjct: 290 GKTDIALQMVGKFNVYNALAAISAALIEGVALERIK---ASLEAVPGVPGRVESVQAGQE 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F ++ + Y   P  ++  +  + +++P    R I V G   +     +     +A   + 
Sbjct: 347 FAVVVD-YAHTPDGLENVLRAVKELAPP---RIICVFGCGGDRDRTKRPIMGSIAARYAD 402

Query: 399 YNISH----------VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           Y +            + L       LKD +    +    +    +   +      GDVV+
Sbjct: 403 YVLVTSDNPRTEDPDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAV-EMASPGDVVL 461

Query: 449 V--KS 451
           +  K 
Sbjct: 462 IAGKG 466


>gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 507

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 178/473 (37%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               D+L+   GH     P      V GI+ +S  + P   F AIKG   DG+ +   A+
Sbjct: 1   MKITDILKM--GHLNYSEPLNQSRNVKGITDNSNEVRPGYIFIAIKGHKEDGNIYTQQAI 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
             GA L++   D      +L++P   V +    L ++A            +I ITG+ GK
Sbjct: 59  LNGAILIIGEDDFT----NLTVPYLKVKNARKTLGQVAKKFYKDPSKNKIMIGITGTNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFELG 168
           TT    +   L     + + IG+  N I               T+ ++       +  + 
Sbjct: 115 TTIGFFIKQLLEKQGYSVSSIGTIYNEINGKRIQSVNTTPNAKTINQLLTASTDQVVVME 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G  +     ++   A+   +   HL     +EE    KA +FE L+  GT  +NY+
Sbjct: 175 VSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLFEKLKLDGTAIINYN 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + L  +  A G K + + G+      Q+       E + + V+ + K   +     
Sbjct: 235 DRWGKKLTERLTAQG-KKVITVGEEPTNQVQI----LAKELNNVSVRYKNKEYNLRTPLP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+ M+  +   L    +     +S F    GR + +  A      T++ + Y  
Sbjct: 290 GVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLA---NKVTVVVD-YAH 345

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLS 407
            P ++  +I+       +G  R I V G      E  +   ++    LS Y I  V  L 
Sbjct: 346 TPDALATSINTAIS---NGAKRIITVFGFAGNRDESKRKAMLENVCRLSTYAILTVTELF 402

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLF----LFIQSSL---VDGDVVVV--KS 451
           G  +  L             E    +     L IQ ++     GD V++  K 
Sbjct: 403 GSTIDNLYSDYISIQKECQVEEKTSIIMDRTLAIQKAIWEAQSGDWVLLLGKG 455


>gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis N1568]
          Length = 492

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELVCRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S+ AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
 gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
          Length = 484

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 180/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV   + +      ++    V+D    + KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVC--ENLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL ++          +   E
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK   F+GL KT     N
Sbjct: 179 VSSHSVAQKRI--GGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     ++++     +DF+ +  +   E   +++     ++EV   
Sbjct: 237 LDDKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEGMLLDIN----NVEVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGAACLLGKKAEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++  +G+G  I V+G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEV-LNGKGHVITVVGA---GGNRDKGKRPLMAQEAVKQS-DKVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L          V                    DV++V  K 
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 487

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 174/473 (36%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       +  I  DSR ++  + F A++G   DGHD+I  AV +GA 
Sbjct: 4   LKDILYKVTLETVVGNTAVAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGAL 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            ++        +    I    V D   AL  +         +   +I ITG+ GKTT   
Sbjct: 64  AIICEELPEQIVNG--ITYVKVADTSSALATIASNFYGNPSANLKLIGITGTNGKTTIAS 121

Query: 125 MLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFE---LGMS 170
           +L             + +             +     LT+ +   ++     E   + +S
Sbjct: 122 LLYQLFQKAGYKTGLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +R    + T ++  HL       E    K + F+ L KT    +N DD 
Sbjct: 182 SHGIHQKRTEGLRFEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKTAFALVNTDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD++ +  +         + L+ +  EV    IG 
Sbjct: 242 NGAVMVQNTKAKKV----TYALKSYADYKAQILENQLSG----LLLKIQDQEVWVKLIGS 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L       +L  D   A+K LS      G   R++  +++G  T I + Y   P
Sbjct: 294 FNAYNLLAIFATAELLGLDQIEALKLLSELESVSG---RFQYFISEGNVTAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E   I V+G     G+   +    +  + S  +   +  S   
Sbjct: 350 DALKNVLETINDIRTKNE-ELITVVGA---GGDRDTTKRPKMGHIASALSTKTIITSDNP 405

Query: 409 -----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVV--KS 451
                  ++   +A    I+     ++      I+++      GD++++  K 
Sbjct: 406 RSEKPEAIIEQVEAGVEPINYKKILSITDRKQAIKTACQLANPGDIILIAGKG 458


>gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
          Length = 492

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 159/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFGIFE------------LGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD                 + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AIINVDDEYGAELIGRLKKDCSDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S NAD ++  +   S+      Q            +G   AQN+   + ++      
Sbjct: 263 YGFSGNADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGCIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G  
Sbjct: 323 FDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAVPT 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVERATANDIILIAGKG 464


>gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
 gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
          Length = 492

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 162/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDSLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGTLEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLQH---AIINVDDEYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G S+ AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YGYGFSEQADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  ++ L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLNNVLEVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
            +    E        +        D++++  K 
Sbjct: 432 SNPERVEVDRAVAIRYAVEQAAANDIILIAGKG 464


>gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
 gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
          Length = 494

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 99/462 (21%), Positives = 177/462 (38%), Gaps = 38/462 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +        V G+S+DSR + P   F A+ G    G  F+  A+++GAG V+ +    
Sbjct: 12  GLTARPGSDVAVTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGE 71

Query: 76  ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                ++   ++P+  V+D   AL+  A        AT++A+TG+ GKT+      +   
Sbjct: 72  DTARQALAGGTVPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQ 131

Query: 132 SIKKTYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIR 176
           ++    A IG+            +    P+TL R+  +     V     E     L + R
Sbjct: 132 ALGLDAANIGTTGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASSHGLAQRR 191

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V    A  T     HL   +  +E   AKA +F   L + GT  +N DD    +L
Sbjct: 192 L--DGVMLKAAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVL 249

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             ++ A G K +   G+    + QL+  +  +    +    QG    V    IG   A N
Sbjct: 250 VERARARGQK-LIRVGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMN 308

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L   G+V    A+     + L       G   R + A  +     +   Y   P +++ 
Sbjct: 309 VLTAAGLVIACGAEPKAVFEVLPQLATVRG---RMQLAATRTNGATVFVDYAHTPDAVET 365

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411
           A+  L    PH  GR IA++G     G+  ++    +    + +  + +           
Sbjct: 366 ALRALR---PHVLGRIIAIVGA---GGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDP 419

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVVKS 451
             ++ A+        +E  D     ++   +L  GD +++  
Sbjct: 420 ALIRAAVMAGAGPEATEVGDRAEAILRGVDALGPGDALLIMG 461


>gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
 gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
          Length = 493

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 171/454 (37%), Gaps = 39/454 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           Q  + G+++DSR + P   F A+ G    G +FI +A+++GAG ++ +            
Sbjct: 19  QANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAILTDATGARLAQDFLS 78

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                +   +D    L   A         T+IA+TG+ GKT+           +      
Sbjct: 79  LSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERMGLAAVN 138

Query: 140 IGS----------YNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFLTHLVRP 184
           +G+            +    P+TL RM    +      G  E     L + R     V  
Sbjct: 139 LGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASSHGLAQRRL--DGVHL 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL   +  +E  +AKA +F   L + G   +N DD     + A +   G
Sbjct: 197 MAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDPRGAEMAAIATERG 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + + G++  AD +L   +  +    +  + + +  ++    IG   A+N+L+  G+V
Sbjct: 257 -QDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGFQAENVLLAAGLV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               AD +   + L       G   R + A  +     +   Y   P ++  AI  L   
Sbjct: 316 IGAGADAEQVFEVLPDMRTVRG---RMQLAATRDNGAAVFVDYAHTPDAVATAIKALR-- 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
            PH  GR IA++G     G+  ++    + +  +  +   V ++       +  +++ A+
Sbjct: 371 -PHVMGRLIAIVGA---GGDRDRAKRPLMGQ-AAAAHADRVIVTDDNPRSENPASIRAAV 425

Query: 419 PRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +               L    +L  GD +++  
Sbjct: 426 MQGCPKATDVGDRAEAILRGVDALGPGDALLICG 459


>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 491

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 184/479 (38%), Gaps = 51/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +    ++++ I+ H I ++      + GI+ DSR +     FFA+ G   DG ++I  A+
Sbjct: 1   MKKLKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
            KGA  V +  ++    G   +P+  V ++L  L+K++            II +TG+ GK
Sbjct: 61  SKGASAVFLEGEVNNIYG---VPLVRVREILDVLSKVSSYFYDFPSKYLNIIGVTGTNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIF 165
           TTT  +L     S       IG+    I                   + R  VD +    
Sbjct: 118 TTTTNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTPQPQDLQEILRKMVDREVKFL 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S           +    AV T +   HL     +EE   AK +IF  LE  G   +
Sbjct: 178 AMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLEDGGFAVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D+ +   +     +L  + ++     KN D  L+K +  +    +E+      + +  
Sbjct: 238 NRDNEWTGRI-----SLPNRRVFWVSL-KNGDLYLKKHENTNNGMLLEIGTPLGDLIIDT 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N+L  +G++  L   ++   K LS F   +GR +  R    Q F  ++D  
Sbjct: 292 KLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIR--EGQNFDVIVD-- 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  +    +VL  +    +GR I V G     G+   +    + E+ +      V 
Sbjct: 348 YAHTPDGL---FNVLQTVKEFTKGRVIVVFGC---GGDRDPTKRDKMGEISARL-ADIVI 400

Query: 406 LSGFH---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         +  +++ + R     Y   E  +           +GD V++  K 
Sbjct: 401 VTSDNPRTEDPLKIIRQIEEGIRRVGRSDYFVIENREEAIKKAIEIAGEGDSVLIAGKG 459


>gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
 gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
          Length = 492

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +        T+
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGVELAGRLKKDCPDLTV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G S++AD ++  +   S+      Q            +G   AQN+   + ++    
Sbjct: 261 YGYGFSEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVERAASSDIILIAGKG 464


>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
 gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
          Length = 484

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 180/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV   + +      ++    V+D    + KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVC--ENLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL ++          +   E
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK   F+GL KT     N
Sbjct: 179 VSSHSVAQKRI--GGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     ++++     +DF+ +  +   E   +++     ++EV   
Sbjct: 237 LDDKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEGMLLDIN----NVEVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGAACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++  +G+G  I V+G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEV-LNGKGHVITVVGA---GGNRDKGKRPLMAQEAVKQS-DKVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L          V                    DV++V  K 
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
 gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
          Length = 478

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 165/474 (34%), Gaps = 56/474 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I            +  ++ DSR I     F AI G  +DGH FI  A+  G
Sbjct: 1   MNLTDILDKIDYIDYTKNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
              +VV  D+  + G   I    V D   AL +++  V      K  +I +TG+ GKTTT
Sbjct: 61  TNTIVVTEDVSQNEG---INYIKVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFE 166
             M++  L  +      IG+    I                        +   +D  + E
Sbjct: 118 ASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L   R     +   +AV   ++  H+     +E    AK  +FE  +K      N
Sbjct: 178 CSSHGLYLHRL--DGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IAN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +    KA+         Y+F     +DF+    +    +   E+    K+++ V +
Sbjct: 233 VDDEYGRKAKARFEDA-----YTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N +  +  V++L  ++    K+L  F   E    R+    N     ++ + +
Sbjct: 284 RFALFDVYNAVAAIVAVNLLGYELKDIAKSLESFTGVEA---RFEFVKNDMGINIVID-F 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P + +     +       + R+IAV G M   G+ ++    ++ ++ +  N+  V  
Sbjct: 340 AHTPKAFENIYKSV-----PNDKRKIAVYG-M--SGDRTREIRHEVGKISAENNVFSVVT 391

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +        + +           +      +              DGD V++  
Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEMANDGDFVLLLG 445


>gi|144897230|emb|CAM74094.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 304

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 119/303 (39%), Positives = 168/303 (55%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +FELGM+H GE+  LT +VRPH+AVITTI   H + F+  E+IA AKAEIF G+E  GT+
Sbjct: 1   MFELGMNHAGELIPLTKMVRPHVAVITTIEAVHSAFFATTEDIADAKAEIFLGVEAGGTV 60

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  D+  F  L A + A GI    SFG   +AD ++       + + +   L+  ++  
Sbjct: 61  ILPRDNRHFRRLAAAAKAAGISHRQSFGSHIDADARMLDCAVDPDDTAVFALLRDHALAF 120

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L  V  L  D + A ++L+   P +GRG+R+  A   G   +ID
Sbjct: 121 RVGVPGLHWGMNALAVLLAVGALGGDAEKASQSLAAMRPPKGRGERHVVAWKGGSIEVID 180

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ESYNA+P SMKAAI+ L+   P   GRRIAVLGDM E+G+ + + H  LAE  +L+N   
Sbjct: 181 ESYNASPVSMKAAIATLAAARPGKGGRRIAVLGDMLELGDSAPALHAHLAEAAALWNTDL 240

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           V  +G  +  L  ALP +    ++     L   I++ +  GDVVVVK S      +++  
Sbjct: 241 VCTAGPLMAHLHQALPATRRGIHAANSTELAGLIKTVIKPGDVVVVKGSAGSRMAQVVKA 300

Query: 464 LLE 466
           LLE
Sbjct: 301 LLE 303


>gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
 gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
          Length = 487

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 168/473 (35%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       VN I  DSR +   + F AIKG   DGH++I  A+  GA 
Sbjct: 4   LKDILFGVSITAVSGSTSVMVNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
            ++  T  V  +    +    VD+   AL                ++ +TG+ GKTT   
Sbjct: 64  TIICETMPVTIVDD--VTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISS 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMS 170
           +L             I +    +                     ++  DV      + +S
Sbjct: 122 LLYQLFKKAGFKVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +    A+ T ++  HL       E    K  +F+ L K   +  N DD 
Sbjct: 182 SHGIHQKRTEGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNLPKKAFVLTNVDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A      Y++     AD++ +  +       +++       EV    IG 
Sbjct: 242 NGLVMLQNTKARK----YTYALKTYADYKAQILENQFNGQLLKID----GSEVWSKLIGD 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A NML   G   +L  +    ++ LS     +G   R++  +++   T I + Y   P
Sbjct: 294 FNAYNMLAIYGTAQLLGLEKLEILRLLSELENVDG---RFQYFISKERITAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++++    E   I V+G     G+  +S    +  + S  + + ++ S   
Sbjct: 350 DALKNVLDTINKLRTGNE-NVITVVGC---GGDRDRSKRPVMGHIASEMSTTTIFTSDNP 405

Query: 409 --FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +   +   + V         E+ +             D++++  K 
Sbjct: 406 RTENPDEILKEIEAGVEVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKG 458


>gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 487

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 95/458 (20%), Positives = 163/458 (35%), Gaps = 53/458 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+       +  I  DSR I+ Q+ F AIKG   DGH FI  AV  GA 
Sbjct: 4   LKDILYKVAIESVKGSTAVDIKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGAN 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
           +VV        I    +    V D   AL  +A        +   +I +TG+ GKTT   
Sbjct: 64  VVVCEELPSEVIPE--VSYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTS 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168
           +L     ++      I +    +       ++                 V V+F   E+ 
Sbjct: 122 LLYQMFKTLGYKVGLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVS 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              + + R L   +     V T ++  HL       +    K   F+ L K G    N D
Sbjct: 182 SHGIAQHRTL--GLNFEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQLSKKGFALTNVD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A      + +G     D++++  ++      +++ + G   EV    I
Sbjct: 240 DKNGNYMLQNTKA----KTFGYGVKNLTDYKVKILEKSFSG--LKLNINGT--EVWSRFI 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L    +  +L       ++ LS   P EGR + +  +   G   ++D  Y  
Sbjct: 292 GDFNAYNLLAVYAVADLLEVKDIENLQNLSQLKPVEGRYQHHMSST--GIHVIVD--YAH 347

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +   + I    E   I V+G   +     +     +A  LS      V L+ 
Sbjct: 348 TPDALQNVLQTTNDIRSRSE-ELITVVGCGGDRDTTKRPLMGKIAGNLST----KVILTS 402

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +                +E  D +   I+  +   DV
Sbjct: 403 DNPR--------------TEDPDSIIKDIEKGVEPQDV 426


>gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M01-240355]
          Length = 492

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVSFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELVGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 487

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 170/473 (35%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+       +  +  DSR  +  + F AI+G   DGHD+I  AV +GA 
Sbjct: 4   LKDILYRVTLESVVGNTAIAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGAL 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++        +    I    V D   AL  +A        +   +I ITG+ GKTT   
Sbjct: 64  AIICEEMPQQIVNG--ITYVKVADTSSALATIASNYYGNPSANLKLIGITGTNGKTTIAS 121

Query: 125 MLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFE---LGMS 170
           +L             + +             +     LT+ +   ++     E   + +S
Sbjct: 122 LLYQLFKKAGYKTGLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL       E    K + F+ L KT    +N DD 
Sbjct: 182 SHGIHQKRTEGLHFEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDELPKTAFALVNNDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD++ +  +       ++VQ      EV    IG 
Sbjct: 242 NGPVMVQNTKAKKV----TYALKSYADYRAQILENQLSGLLLKVQ----DQEVWVKLIGS 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L       +L  D   A++ LS      G   R++  +++G  T I + Y   P
Sbjct: 294 FNAYNLLAIFAAAELLELDQMEALQLLSELESVSG---RFQYFISEGNVTAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E   I V+G     G+   +    +  + S  +   +  S   
Sbjct: 350 DALKNVLETINDIRTKNE-ELITVIGA---GGDRDTTKRPKMGNIASALSTKAIITSDNP 405

Query: 409 --FHVLALKDALPRSIH-VHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  A+ + +   +  +HY                      GD++++  K 
Sbjct: 406 RSENPEAIIEQIEAGVEPIHYKRILSITDRKQAIKTACQLANAGDIILIAGKG 458


>gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida GB-1]
 gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1]
          Length = 496

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 165/463 (35%), Gaps = 49/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V         +    +
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAVAYEEQGATVLPLTEV 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +          +  ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHALEQGR--VAALEFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-- 243
           IAV+T ++  HL     +E   +AKA++F          +N DD+F   L A        
Sbjct: 194 IAVMTNLSRDHLDYHGSMEAYEAAKAKLFAW-PSLRCQVVNLDDAFGRRLAADFARRPSV 252

Query: 244 ---IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + S+  ++ +A    R+     +     +        +    +G     NML  
Sbjct: 253 DHIDTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRSQLLGRFNLSNMLAA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  L   +D  +K     H   GR +R       G   L+   Y   P +++  +  
Sbjct: 313 VATLLALDYALDEILKVTPQLHGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L    PH  G+ + + G   +     +    ++AE L+      V ++  +         
Sbjct: 369 LR---PHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLA----DRVLVTDDNPRTEDPQRI 421

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++    R + V +          + +S    DV+V+  K 
Sbjct: 422 FDDIRPGFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKG 464


>gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           ST-640]
 gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           020-06]
          Length = 492

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  RDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLQH---AVINVDDGYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S+ AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEQADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
            +    E        +        D++++  K 
Sbjct: 432 PNPERVEADRAAAIRYAVERAAANDIILIAGKG 464


>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_7]
          Length = 486

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 171/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KG
Sbjct: 1   MELRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V         G  S     V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AVAIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVDFGIFE 166
             +L      +      + +  N+I             PLTL  +         ++   E
Sbjct: 119 ATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + R ++ L      + T +   HL     +E    AK + F+ L        N
Sbjct: 179 VS-SHSIDQRRISGL-SFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     ADF+ +  +   E +  ++ + G+  EV+ H
Sbjct: 237 ADDKSGLVMLQNTKAKK----LTYSLRTLADFKGKILESHFEGT--DLIINGR--EVMVH 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L   G    L  D +  +  LS      GR +  +  L  G+  ++D  Y
Sbjct: 289 FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ + ++   G+GR I V+G      +  +      A  LS      V L
Sbjct: 345 AHTPDALTNVLNGIHEV-LDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLS----DQVIL 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D +                              GDV++V  K 
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
 gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
          Length = 499

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 151/415 (36%), Gaps = 34/415 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ I            ++ I  DSR +     F  I+G + DGH +I  A++KG
Sbjct: 1   MKISELIKDITPVETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV+  D    + S  I    V+D    +  LA           ++I +TG+ GKTTT
Sbjct: 61  AVAVVIEKD--LEVYSEDITYIRVNDSRETMGYLASTFYNYPLKNLSLIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL------ARM-PVDVDFGIFE 166
             ++   L         +G+  N I           P +L      ARM    V   + E
Sbjct: 119 TYLIKAILEEAGFNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARMVDSGVTHAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R     +   I V T I+  HL     ++E   AK+ +F  LE  G   +N
Sbjct: 179 VSSHALDLKR--VEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPGGWAVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS  + +   +       I ++G   + D +  +           V  + +S ++  +
Sbjct: 237 IDDSHSDKIIKSTTG----NIITYGIEGDCDLKANEINLSPTGVSYHVSGK-ESFKIDLN 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L  + +T    +       G   R+        F ++ + Y
Sbjct: 292 LTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAG---RFELVNEGQDFAVVVD-Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              P  M+  +    +     +G  I V G   +  +  +     +A  L  Y I
Sbjct: 348 AHTPDGMENVLETAREF---VKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCI 399


>gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 492

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 157/453 (34%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D          +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  A                           E+    L + R   + V    A+ T
Sbjct: 146 FWGALEEATHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFCSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLQH---AIINVDDEYGAELVGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G S+ AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YGYGFSEQADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  ++ L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLNNVLEVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVERAAANDIILIAGKG 464


>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
 gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
          Length = 490

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 181/479 (37%), Gaps = 54/479 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + + I    +    +  + GI  DSR I     F A+KG   DGH+FI  A+  GA +++
Sbjct: 4   IFENISHTVLHKGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMII 63

Query: 70  VNTDMVASIGSLS--IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V  ++  S       I    V+DV   L           + K  II ITG+ GKTT+  +
Sbjct: 64  VEENIEVSKYDKYEDISFVFVEDVRKHLGIIASNYYGYPQDKIKIIGITGTNGKTTSSYI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVD--------------VDFGIFELGM 169
           L   L       A IG+  N I      T+   P                V++ I E+  
Sbjct: 124 LENILE----KTARIGTTGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEVS- 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH  EI    ++++   A+ T +   HL     +E   +AK +IF  L  +GT  +N DD
Sbjct: 179 SHALEIGR-VNMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFSMLRNSGTGTVNIDD 237

Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            + + +  +          +   K KNAD      +  ++   +++    K      + +
Sbjct: 238 GYGKRIIEEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N+L        L  +++  I+ L       G   R+    N     ++ + Y  
Sbjct: 298 GEYNLYNVLGCAASALALGIEIEKIIEKLQKMPSVPG---RFETVKNNKNARIVVD-YAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               +      L +I+ +   R I V G     G+        +A+  + ++   + L+ 
Sbjct: 354 TDDGLTNIGKTLRKITDN---RVITVFGA---GGDRDNKKRPKMAKAAAEFS-DFIILTS 406

Query: 409 FHVLA------LKDALPRSIHVHY-------SETMDGLFLF-IQSSLVDGDVVVV--KS 451
            +         LK+     I +++        E  +    + +Q    +GD +++  K 
Sbjct: 407 DNPRTENPANILKEVEAGLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKG 465


>gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
 gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
          Length = 495

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 160/473 (33%), Gaps = 44/473 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   I   ++    +  +  +  DSR   P   F A+ G   DG D+I  A++  A
Sbjct: 4   TLKSLAANIDQLTVLGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTK 123
             ++ +  +     +   P     D   AL  +A A     + K   I ITG+ GK+T  
Sbjct: 64  AAILHDGSLSLDPNT---PQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVA 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFEL 167
            M    L    +    I +    I              +TL  +  D       + + E 
Sbjct: 121 SMCATILRHSGQRVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVMEA 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R +   ++P +A+ T ++  HL     +     AKA++F          L  
Sbjct: 181 SSHALDQHRLV--GIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKLFREYHPK-LALLPS 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D+  + L +     G+  + ++G+        ++     + +   +Q + +S  V    
Sbjct: 238 SDAHAQALNSICREQGVA-VQTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMA 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L        +  D++T  + L+ F    G   R +       F ++ + + 
Sbjct: 297 PGRFNLDNALAAASACLGMDLDLETVAEGLNRFQSVAG---RVQAIHEGQNFAVLVD-FA 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S L  ++P   G+   V G     G+        + E         +   
Sbjct: 353 HTPDALDRLLSSLRPLTP---GKLWVVFGC---GGDKDSGKRPHMGECAGRLAHFPIITD 406

Query: 408 G----FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A++  + R          +  +    +   +   GD VV+  K 
Sbjct: 407 DNPRSEDPAAIRAQIMRGCRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKG 459


>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
 gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
          Length = 493

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 175/478 (36%), Gaps = 54/478 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+    I  +    V  I +DSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 8   AEELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +VV   ++        I    V D   A  L             T+I +TG+ GKT+   
Sbjct: 68  IVVTERELPLGE---MIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFELG 168
           ++   +  + +  A  G+   ++              L+  +M              E+ 
Sbjct: 125 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
              L   R     V   +A+ T +   HL     +EE   AK  +F    + LEK   + 
Sbjct: 185 SHGLALGRL--AGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVV 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           LN DD++ E   A +       ++++G K++ ADF+    +     +  +V++      V
Sbjct: 243 LNADDAWSERYAAMTP----FPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRV 298

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + +G     N+L  +         ++  I+ +    P +GR ++    L       + 
Sbjct: 299 KMNLLGEFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSELP----VQMF 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ AI       P+ +G+ I ++G     G   +S    +AE  S     +
Sbjct: 355 VDYAHTPDAIEKAIEA---AQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKAS--AAEY 406

Query: 404 VWLSGFHVLA------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+              D     +H +++                  GD+++   K 
Sbjct: 407 VILTTDDPRYEDYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKG 464


>gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 501

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 94/464 (20%), Positives = 170/464 (36%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             I++DSR +   + F A+KG   DG  FI  A+++GAGLV+   D              
Sbjct: 22  KQITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   S  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
             +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       AK 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +A+ + T  SF        +        +   +  +    + E+    IG     N+L 
Sbjct: 261 PNAVAVSTDASFSSDHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLT 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           TL  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A+ 
Sbjct: 320 TLASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
                  H EG    + G   +     +     +AE L+      V  +  +        
Sbjct: 380 A---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDNTK 432

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +     +   V      +           + DV+++  K 
Sbjct: 433 IMANILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Oceanithermus profundus DSM 14977]
 gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oceanithermus profundus DSM 14977]
          Length = 417

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 175/457 (38%), Gaps = 44/457 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + + G             +  DSR++ P  AF A+ G    G  +   A+ +GA LV+
Sbjct: 3   LARVLGGRP--GPDARPARDLVWDSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVI 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                             VDD   AL +L    R      +  ++GSVGKT+TKE L  A
Sbjct: 61  GPQARDRG--------LQVDDPYRALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALARA 112

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L       A  G+ N    +      +  D +  + ELG+   GE+  L  L  P + V+
Sbjct: 113 LD----WPATEGNLNTPPALTRFFWHLSPDAEGAVVELGIDRPGEMDELLELTAPDLGVL 168

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IY 248
           T IAP HL     +E +A  K ++                    L        G+     
Sbjct: 169 TAIAPVHLEGLGSLEAVAREKLKLLAASP-------------LRLAHVDLRHWGLPEGTR 215

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G    A+F     +    ++    +  G+++      +G   A   L  L    +L  
Sbjct: 216 TYGFDPAANFAGEALELGCAETRF--RYAGRTL--RLGVLGRGAALAALAALAAAELLGR 271

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           DV  A + L    P  GR +  R     G    +++SYNA+P +++AA+ VL++      
Sbjct: 272 DVRVAAERLEALKPAPGRLEPLR----AGGTLWLNDSYNASPKAVEAALEVLAR----CP 323

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G R  VLG M E+G  ++ +H++ AE + +         G    A+    P +      E
Sbjct: 324 GPRGVVLGTMRELGPEAERWHLEAAERV-MATADRALFVGEFAAAMAAGRPGATAAASVE 382

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                       L     V+VK S +    RL+  + 
Sbjct: 383 EASERLPDWSRGLAS---VLVKGSRALALERLLEGIR 416


>gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 487

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 168/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG D I  A+++GA  V         +    +
Sbjct: 15  DLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAVAYEVQGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +                 N I V  TLA +       +  E+    L + R     +   
Sbjct: 135 TLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     ++    AKA++F          +N DD F   L A+       
Sbjct: 193 VAVLTNLSRDHLDYHGTMQAYGEAKAKLFAW-NDLKCRVINLDDEFGRQLAAEKRES--- 248

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++  +   A   +R+ +   E     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R       G   L+   Y   P +++  ++ L    
Sbjct: 309 GLDYALDEILKVLPKLEGPAGRMQRL----GGGTQPLVVVDYAHTPDALEKVLTALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +G+ + + G   +     +    ++ E L+      V ++  +            ++
Sbjct: 362 PHAKGKLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVLVTDDNPRTEDPQRIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +V +          + +S    DV+V+  K 
Sbjct: 418 AGFMAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKG 455


>gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 492

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDGYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      +      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
 gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 162/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis 053442]
 gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           053442]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 162/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELVGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PERVEADRAAAIRYAVERAAANDIILIAGKG 464


>gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 163/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +    IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFCSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +     +   +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLQH---AIINVDDGYGAELAGRLKKDCLDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITNFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLAVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
            +    E        +        D++++  K 
Sbjct: 432 PNPERVEVDRAVAIRYAVEQAAANDIILIAGKG 464


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 178/482 (36%), Gaps = 49/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++L       I    +  + GI+ +S+ +    AFFAIKG   DGH+FI  A++ 
Sbjct: 1   MKLLKEIL--TDEKIIYGNQETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKN 58

Query: 64  GAGLVVVNTD-MVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKT 120
           GA ++ +  +  V S+   +I V   D+     AL           K  +IAITG+ GKT
Sbjct: 59  GASVIFIEDEKYVESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFE 166
           TT  +L             IG+ N  +G  +                 ++  D    +  
Sbjct: 119 TTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVV 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIF- 224
             +S     ++  +  + H  + T +   HL     +E    AK  IFE +++       
Sbjct: 179 AEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIY 238

Query: 225 -LNYDDSFFELLKAKSH---ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD +   +         +    I ++GK+   DF++  ++    ++    + +   
Sbjct: 239 SINVDDEYGRRILDYLKNHLKVNDDKIITYGKTSE-DFKILDYRLSLFETEFSYKYKDTL 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++     G     N+   +  +     D+    +      P +G   R+     QGF  
Sbjct: 298 SKIKTKLRGVFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKG---RFEVIEGQGFIV 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +++  +  L++I  +   R IAV G      +  +    + AE LS   
Sbjct: 355 VID--YAHTPDALENILKSLNEIKEN---RIIAVFGAGGNRDKTKRPLMGETAEKLS--- 406

Query: 401 ISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V L+  +         +  + D +     V              S   + D++++  
Sbjct: 407 -DIVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/477 (21%), Positives = 174/477 (36%), Gaps = 53/477 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL++ IQ  +   +    V  ++ DSR + P   F AIKG   DGH++   AV++GA
Sbjct: 8   NLTDLVKTIQLINQPNLEGIVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVERGA 67

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTK 123
             VV    +      LS+P   V D   +  L   A  A    +  +  ITG+ GKTTT 
Sbjct: 68  VAVVSERSL-----DLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTTTT 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARM-PVDVDFGIFEL 167
            +L   L  +  +   IG+    I   +                LA+M    V   + E+
Sbjct: 123 TILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDEGVTDVMMEV 182

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTI 223
               L   R +       I   T +   HL      E  A AK  +F  L     +    
Sbjct: 183 SSHGLELGRVI--GTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRGKVA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+   L +  + A     + ++G    AD      +Q   Q+   +  QG  + V
Sbjct: 241 VLNADDAQTPLYETMTGA----KVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAKLPV 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG     N+L+  G +      ++   KAL + HP +GR +R            + 
Sbjct: 297 TVQFIGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGRMQRLDVPGYN-----VY 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  ++  +  L  +       +I  L  +   G    +    + E+ S Y  + 
Sbjct: 352 ADYAHTPDGIEQCLKSLVGVPKE----KIIFL--IGTGGNRDVTKRPAMGEMASTYAGTV 405

Query: 404 VWLSGFHVLALKDALPRSI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +        +++ + I     H ++ E    +    +        +++V+  K 
Sbjct: 406 IITTDDPRFEAYESITKGIAAGMTHDNFVEIGDREEAVRYAARLAKPDNIIVLAGKG 462


>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 484

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 173/477 (36%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L AI    +       V  +  DSR       F A++G H DGH F+  A+++
Sbjct: 1   MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLFVEKAIEQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTT 121
           G  L++V            +    V D   AL             +  ++ +TG+ GKTT
Sbjct: 61  GCTLIMVEEMPEKKHED--VTYMMVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---GVPLT-----------LARMPVDVDFGIFEL 167
              +L    +++      + +  N I    +P T           L R  VD       +
Sbjct: 119 IATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +R    + + I   HL      +    AK + F+ L++      N 
Sbjct: 179 EVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+    ++   + A       ++G    ADF+ +  +   +   + +    +  EV    
Sbjct: 239 DEKNGSVMLQNTFAHKK----TYGLKGVADFKAKIIESHFDGMLLNI----EGHEVWVKL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G   +L  +    + ALS     EG   R+    ++     I + Y 
Sbjct: 291 VGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEG---RFEAITSKNGVIGIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S ++ +    + + I VLG     G+  ++   ++AEV +  +   V ++
Sbjct: 347 HTPDAVANVLSTINNLRKKEQ-QIITVLGC---GGDRDKTKRPEMAEVAAKMS-DKVIIT 401

Query: 408 GFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +KD  P     R  +V                   GD+V+V  K 
Sbjct: 402 SDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKG 458


>gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
 gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
          Length = 492

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  +  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F  +GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWQGLQH---AVINIDDGYGAELVCRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q            +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLGKICPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 TA-LWCVFGC----GGNRDRGKRPLMGAAAVEGADKVVITSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVERAAANDIILIAGKG 464


>gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
 gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
          Length = 486

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/453 (20%), Positives = 156/453 (34%), Gaps = 36/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR +     F A+ G   DG DF   AV KGA  ++     +  +G   +
Sbjct: 16  DSVIAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEGGLEGLG---V 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV   +D   A    + A   +  A  +A+TG+ GKT+         + +    A +G+ 
Sbjct: 73  PVVRSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMGTL 132

Query: 144 NN------HIGVPLTLARMPVDVDFGIFEL--------------GMSHLGEIRFLTHLVR 183
                        LT   +       + E+                S  G  +     V+
Sbjct: 133 GVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDGVK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHAL 242
              A  T     HL     +E   +AK  +F+ L   G T  LN D   F    + +   
Sbjct: 193 LKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAVTS 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G ++++S G+      +L           + V+ QG++ ++     G   A N+L+  G+
Sbjct: 253 G-QSVFSVGEDGQG-LRLISRTPTPAGQDLVVEAQGRTYDIRLPLAGAFQASNVLVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 DV   +KAL       GR +R     + G   +    Y   P  ++  +  L  
Sbjct: 311 CVAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGGEAYV---DYAHTPDGLQTVLEALR- 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPR 420
             PH  G+ IAV G   +     +     +   L+   I       S          L  
Sbjct: 367 --PHTRGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRAAILEA 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                   L +GDV+VV  K 
Sbjct: 425 APGAREIGDRRAAIRAAVDLLAEGDVLVVAGKG 457


>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 496

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/482 (21%), Positives = 176/482 (36%), Gaps = 53/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F +LL+A++  + G      V GI+ DSR + P+  F AIKG   DGH++I  A+++G
Sbjct: 1   MLFRELLEAVEADAAGGDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV+   +    G        V D   AL  L+         K  +I +TG+ GKTTT
Sbjct: 61  ALAVVMERRVELPPGVAWA---LVPDARRALALLSARFYGNPSFKMKLIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFE 166
             ++   L+        IG+ NN I                +   L  M ++ VD  + E
Sbjct: 118 TSLIADILAGAGCRVGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEMVIEKVDACVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R         +AV T +   HL     +E+   +K ++F+ L       + 
Sbjct: 178 VSSHALALHR--VDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREA 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +N DD         +      T+Y++G    AD +       +  +   V  +   
Sbjct: 236 GIAVINADDPHAGQFIRAAGG----TVYTYGIKNAADVRAESISIGARGACFGVAGKWGR 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +     G     N L      + +    +   +AL       GR +       Q F  
Sbjct: 292 LRLDLRITGLFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVDS--GQDFAV 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   P  ++  +    +I+   EGR I V G   +     +     +A   S + 
Sbjct: 350 VVD--YAHTPDGLENILKTARKIT---EGRLITVFGCGGDRDRTKRPLMGGIAARYSDFA 404

Query: 401 I-------SHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV-- 449
           I       +   L    +  +++ +  +    Y    D              GDVVV+  
Sbjct: 405 IITSDNPRTEDPL--KIIKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAG 462

Query: 450 KS 451
           K 
Sbjct: 463 KG 464


>gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 485

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 177/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +I    I       + G+ IDSR +     F A++G   DGH +I  A++KG
Sbjct: 1   MKLKEILTSIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++     + +  +  I    V D   A+ K+A A      SK  ++ +TG+ GKTT 
Sbjct: 61  AIAILCEE--LPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL R+          +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ L K+     N
Sbjct: 179 VSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKSSFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     +DF+ +  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTKS----KVYTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAIRSP--QGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V +
Sbjct: 345 AHTPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKAS-DRVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L                              GDV++V  K 
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
 gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/399 (22%), Positives = 153/399 (38%), Gaps = 43/399 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              VN I   SR++   + F AIKG  +DGH+FI  A+  GA  VV   +       L +
Sbjct: 19  DIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEAISNGAVAVVGEAEYDC----LPV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   AL  LA            +I ITG+ GKTTT  M+     +  ++ +   
Sbjct: 75  PYIKVQDARQALGNLAKTLYCDPSKMHNMIGITGTNGKTTTAYMVKHIFQTASESCSLFS 134

Query: 142 SY--------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +                  I     + RM +D    + E+    L + R     +  +  
Sbjct: 135 TVSNFVNGTELMSTATTPDILELNKMLRMSMD-KNVVMEVSSHGLHQKR--VEGIEFNYG 191

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +EE  + KA +F+ L+K G   +N    +   L  +      +++
Sbjct: 192 IFTNLTHDHLDYHQNMEEYFNTKAGLFKLLKKNGEAIINSGCPWGRKLINQLKN-KRQSV 250

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG S+N D QL   K     S + +Q     +E+     G H  QN L  +       
Sbjct: 251 LSFGTSENDDLQLLSTK--DGVSKIRIQGSNVKLEIKMPMPGNHNLQNALAAILCAYRAG 308

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +V+   +A+  F    GR + Y               Y   P  ++  +  + +++ + 
Sbjct: 309 VNVNDIKRAVESFPGVPGRFEEYYSQ-----SVNFILDYAHTPDGLENLLETVKKLNGN- 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             R + V G            + D+ + L++ +IS  + 
Sbjct: 363 --RIVHVFGFRG---------NKDMTKRLAMLDISAKYC 390


>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/497 (19%), Positives = 171/497 (34%), Gaps = 63/497 (12%)

Query: 5   WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   LL    +   S        + GI  DSR +AP + F  +KG   DGH F + A++
Sbjct: 95  MTLRKLLNEARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIE 154

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           KGA  ++   ++  + G  +     V+D    L+ LA         K +++ ITG+ GKT
Sbjct: 155 KGAVAIISLMEVSLTEGLKAA--VIVEDTSVILSALAGVIYGHPSKKLSVVGITGTNGKT 212

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI------------GVPLTLARMPVD-----VDFG 163
           TT  +L     ++      +G+   +I               L L  +         +  
Sbjct: 213 TTSYLLQSLYEAMGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNGTEVC 272

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
           I E+    L   R     +   +AV T +   H+      EE   AK  +F  +   +  
Sbjct: 273 IMEVSSHGLVLGR--CEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQ 330

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N DD         S       + +FG   K+AD      K    +S + V+     
Sbjct: 331 RKVVNIDDPNVSYFV--SQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGD 388

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+    +G H   N+L  + +   + A ++  ++ +       GR +      ++G   
Sbjct: 389 VEISSRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELI----DEGQTF 444

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +   Y   P ++   +  + +  P    R I VLG   +  +  +     +A   S   
Sbjct: 445 AVLVDYAHTPDAVARLLDTVRECGPK---RIITVLGCGGDRDKGKRPIMAKIAADKSDVC 501

Query: 401 I----------------SHVWLSGFHVLALKD--------ALPRSIHVHYSETMDGLFLF 436
           I                  +   G+ +              LP    +   E        
Sbjct: 502 IITSDNPRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRA 561

Query: 437 IQSSLVDGDVVVV--KS 451
             +   +GD VV+  K 
Sbjct: 562 AVAMAEEGDAVVIAGKG 578


>gi|213419637|ref|ZP_03352703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 303

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 147/316 (46%), Gaps = 16/316 (5%)

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  + 
Sbjct: 1   NDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLA 60

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
            +A AK EI+ GL + G   +N D++ +   ++    +G + ++ F  +  N+DF     
Sbjct: 61  GVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI---IGDRQVWRFSPNAANSDFTAANI 117

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S  +   +Q    S++V+    G H   N L    +   + A +      L+     
Sbjct: 118 HVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAV 177

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G 
Sbjct: 178 PGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGA 230

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S++ H+ + E      I  V  +G     +  A   S    +      L   + + L +
Sbjct: 231 ESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVGEHFADKAALIARLHALLQE 287

Query: 444 G--DVVVVKSSNSCGF 457
                ++VK S S   
Sbjct: 288 QPMMTILVKGSRSAAM 303


>gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 459

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 188/453 (41%), Gaps = 24/453 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +L  I+G  I       +  ++     I  P    F ++      H  I    ++ 
Sbjct: 5   TLGKILTVIKGTIIQGNSDILIKDVARYYEHIEQPNTLLFLVQ------HRNID--FKRI 56

Query: 65  A----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A      VVV+ ++          V  V D+  A +      R      ++A+TG+ GKT
Sbjct: 57  AQYCPCAVVVDREVKELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVAVTGTSGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS+  K    + S N +    + L R+   +   ++E  +   G+I +   
Sbjct: 117 TTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAPGDITYTCS 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P+I +IT I   HL     ++   +AKAE+   + + GT+ LN DD   E +K    
Sbjct: 177 HFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLILNADD---EKIKTIDT 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +     I  FG      FQ       +      + L     ++   G G H   N L  L
Sbjct: 234 SKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALAAL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +  A +ALS F   +               T+ID+++N N AS+KAA++ L
Sbjct: 294 AATHEMGIGITQAAQALSSF---KLLMNHCEIKKGLNQATIIDDTWNINTASLKAAMNTL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +++     +++A++G + ++GE S  +H ++ ++++ +NI ++   G     +      
Sbjct: 351 CELNQQH--KKVALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLANNIATECSL 408

Query: 421 S---IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +     V   E  +G++  +   L +   +++K
Sbjct: 409 NGFHGKVFQFEQTEGVYELLSDILNEETTLLIK 441


>gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
 gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
          Length = 487

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 176/479 (36%), Gaps = 52/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   +L  +    +       V+ +  DSR +   + F A++G   DGH FI  AV  
Sbjct: 1   MISLSKILNGVSIKQLIGSMDVTVHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVAL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA +VV   + +    S  I    V++   AL  +A        +K  ++ +TG+ GKTT
Sbjct: 61  GAKIVVC--EQLPQDLSGHITYIQVENAGFALGLIAANFYDNPSAKLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIF 165
              +L      +      I +  N +             P++L  +  +      D+   
Sbjct: 119 VATLLYKLFVELGFRVGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R     +     V T +   HL      +    AK   F+ L K+    +
Sbjct: 179 EVSSHAVAQHRIT--GLSFVGGVFTNLTHDHLDFHKTFDAYLKAKKAFFDMLPKSAFALV 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A       ++G    ADF+ R  +       M++  +    EV  
Sbjct: 237 NIDDKNGSVMLQNTDAYKK----TYGLKNIADFKGRIVESHFNGMLMQIDTR----EVWI 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+L    +  +L  D    +  LS     EG   R+   ++      I + 
Sbjct: 289 RLVGAFNAYNLLAVYSVAILLEQDTTRVLTILSRLTGAEG---RFDTLVSGNGVIGIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  +  +  +  + E + IAVLG     G+  ++   ++A V +  +   V 
Sbjct: 345 YAHTPDAVENVLRTIVDLRKNKE-QIIAVLGC---GGDRDKTKRPEMAAVAANLS-DKVI 399

Query: 406 LSGFH---------VLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           L+  +         +  ++  +P     H     D              GD+V++  K 
Sbjct: 400 LTSDNPRSEDPQQIIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKG 458


>gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
 gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
          Length = 496

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/461 (19%), Positives = 167/461 (36%), Gaps = 47/461 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-------VASIGS 80
           N +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D             +
Sbjct: 21  NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFAN 80

Query: 81  LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  V  V ++   L+ +A A       K T++ ITG+ GKTTT ++     + +    A
Sbjct: 81  STACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKSA 140

Query: 139 CIGSYNNHIGVPLTLA-----------RMPVD-----VDFGIFELGMSHLGEIRFLTHLV 182
            +G+  N +   +  A           R   D      DF   E+    L + R     +
Sbjct: 141 VMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYR--AEAL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHA 241
              +A+ T ++  HL   + +EE A AK  +F  L       +N DD       AK   A
Sbjct: 199 DFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ-VINADDEIGREWLAKLPEA 257

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           + + T   F   +    + +  +   + + +E +    + E+    IG     N+L    
Sbjct: 258 VAVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTAFA 317

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L  D+   I+   + +   GR +      N     ++   Y   P +++ A+    
Sbjct: 318 GLLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALDA-- 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
               H EG    V G   +     +     +AE L+      V ++  +           
Sbjct: 376 -ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLA----DRVIVTDDNPRTEDPDVIFN 430

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +     +   V              +     DV+++  K 
Sbjct: 431 DIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKG 471


>gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dyadobacter fermentans DSM 18053]
 gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans
           DSM 18053]
          Length = 491

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 156/474 (32%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  ++G  I       V  I +DSR + P   F A++G   DGH FI  A   GA 
Sbjct: 7   LSSLLGEVKGAIIHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAADLGAV 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            ++             I    V+D          A       K  ++ +TG+ GKT+   
Sbjct: 67  AILCEELPEHVRED--ITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGTNGKTSVAT 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELGM 169
            L     ++      + +  N I   +                LA+M       +F    
Sbjct: 125 FLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEVS 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH      +T L      + T I   HL      +    AK   F+ L K+    +N DD
Sbjct: 185 SHSVAQHRITGL-HFAGGIFTNITHDHLDFHKTFDNYIKAKKGFFDALPKSAFALVNIDD 243

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + A     + ++     A F+ +          M++     S EV    IG
Sbjct: 244 RRGTVMVQNTKA----RVETYSLQTLATFKGKIISDTLAGMHMDIN----SQEVWFRVIG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L   G   +L    +  +  LS      GR +++  A            Y   
Sbjct: 296 RFNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSADLIVGIV----DYAHT 351

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P +++  +  ++ +    E + + V+G     G         +AE+   Y+   +  S  
Sbjct: 352 PDALENVLETITHLRNGNE-QVVTVVGC---GGNRDAEKRPKMAEIACRYSNRVILTSDN 407

Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + + D + + +           E      L        GD++++  K 
Sbjct: 408 PRFEDPMDILDQMRKGVPPLDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKG 461


>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
 gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
          Length = 488

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 175/478 (36%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  ++  S+       ++ I  DSR +   + F AIKG   DGH++I  A+++
Sbjct: 1   MANLKDILYKVKLISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  +V   + + S     +     D+   AL  +A         K  +IA+TG+ GKTT
Sbjct: 61  GAVAIVC--EDIPSDIHPQVTYVQTDNSAKALGVMAANYFGHPSEKLKLIAVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFEL 167
           T  +L     ++      I +  N I   +              +L +  VD    I  +
Sbjct: 119 TVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMVDSGCNIVFM 178

Query: 168 -GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH  E   +  L +   AV T I+  HL      +    AK ++F+ L       +N
Sbjct: 179 EASSHAIEQERMAGL-KLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDDLPSDAFALVN 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++     A      Y++     A ++ +      +   +E+ +  K +     
Sbjct: 238 VDDKRGMVMLQNCKASK----YTYSLKMMAIYKAKVLSNSIQG--LELNIDQKDV--WFR 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IGY  A N+L       +L  + +  +  LS    K GR +  +   N G   ++D  Y
Sbjct: 290 QIGYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFE--QVPNNAGITAVVD--Y 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  +       E + + V+G         +    ++A   S      V L
Sbjct: 346 AHTPDALENVLQTIDNFRTGNE-QVLTVVGCGGNRDTTKRPLMAEIACRFS----DRVIL 400

Query: 407 SG-----FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+   + + + V                    S    GD+++V  K 
Sbjct: 401 TSDNPRFEEPEAIIADMQKGVPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKG 458


>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
          Length = 485

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 172/476 (36%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++     + +  +  +    V D   A+ K          SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +R    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG+  ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAARAS-DRVIITS 401

Query: 409 FHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 487

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 169/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    +    +    +
Sbjct: 15  DLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAVAYEVEGATVLPLTDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +          +  ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLVG 134

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +                 N I V  TLA +       +  E+    L + R     +   
Sbjct: 135 TLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHGLDQGR--VAALAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E   +AKA++F          +N DD F   L A  H     
Sbjct: 193 VAVLTNLSRDHLDYHGTMEAYGAAKAKLFAW-NDLRCRVINLDDDFGRQLAADKHES--- 248

Query: 246 TIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++     A +   R+ +   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +  L       GR +R       G   L+   Y   P +++    VL  + 
Sbjct: 309 GLEYALDEILAVLPKLEGPAGRMQRL----GGGTQPLVVVDYAHTPDALE---KVLLALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      V ++  +  +         ++
Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVLVTDDNPRSEDPAQIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V +          + +S    DVVV+  K 
Sbjct: 418 AGFSAAEKVEFVAGRGLAIARLIASASADDVVVLAGKG 455


>gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
 gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
          Length = 521

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/493 (20%), Positives = 165/493 (33%), Gaps = 58/493 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  DLL  +   +IG        + G++ DSR + P   F AI+G H DGH ++ HA++ 
Sbjct: 4   TLRDLL--VGLETIGPPTDLDIPILGLAYDSRQVRPGWLFVAIRGFHVDGHQYVDHALKA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  VVV+        +L +P+  V D   AL  LA    A   +    I ITG+ GK+T
Sbjct: 62  GAVAVVVDVRHWNGPTTLGVPLITVADSRVALAPLAANFYAHPAAHLRTIGITGTKGKST 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------------MPVDVDFG 163
           T ++++  L         I + +  IG                         +     + 
Sbjct: 122 TTDLVSQVLEGGGLRTGMISTVDFKIGARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSYA 181

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-- 221
           + E     L         V   +AV   +   HL      E+  + KA +F  L +    
Sbjct: 182 VLESTSHALSPYWNRLGNVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSE 241

Query: 222 -------------TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                            N DD   +     + +   +   +FG    AD +         
Sbjct: 242 ASCHQGDRVERPVWAIANADDPNCQFFLDAAPSYARR--LTFGVRAAADVRAHAVASGPS 299

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S + V        +     G     N L  L +       ++ AI A        G   
Sbjct: 300 GSHLRVTTPWGEAALHLQIPGSFNVSNALAALSVALSQGVPLERAITA---LEAVPGIRG 356

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R +       F +I + Y  NP S +    VLS + P  +GR IAV G   E     +S 
Sbjct: 357 RMQPIHLGQPFDVIVD-YAHNPDSFE---QVLSMLRPLTKGRMIAVFGSAGERDRAKRSV 412

Query: 389 HIDL-AEVLSLYNISHVWLSGFHVLA----LKDALPRSIH-----VHYSETMDGLFLFIQ 438
             ++      L  ++     G    A    + +   R+                      
Sbjct: 413 QGEIAGRYADLLVLTDEDPRGEDPAAIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHVAI 472

Query: 439 SSLVDGDVVVVKS 451
           ++   GD+V++  
Sbjct: 473 AAAQPGDLVLLLG 485


>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 492

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 156/451 (34%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
            +   HL     +E   + K+ +F   +      +N DD +   L  +         +Y 
Sbjct: 204 NLTRDHLDYHGTMEAYDAIKSRLFYWQDLQ-HAVINIDDEYGAELVCRLKKDCPDLAVYG 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S+ AD ++  +   S+      Q            +G   AQN+   + ++      
Sbjct: 263 YGFSERADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G  
Sbjct: 323 LDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP   +
Sbjct: 379 -LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPN 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PERVEADRAAAIRYAVGRAAVNDIILIAGKG 464


>gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
 gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
          Length = 492

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 159/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +    IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFCSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLQH---AIINVDDEYGAELVGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G S+ AD  +  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YGYGFSEQADICITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  ++ L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P  
Sbjct: 321 YPLNNVLEVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQS 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               Y E        +        D++++  K 
Sbjct: 432 PAPEYVEADRAAAIRYAVERAATNDIILIAGKG 464


>gi|116070403|ref|ZP_01467672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
 gi|116065808|gb|EAU71565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
          Length = 310

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 142/324 (43%), Gaps = 20/324 (6%)

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLT+          + E+GM   GEI  L+    P +AVIT I  AH+     
Sbjct: 2   HNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAVITNIGTAHIGRLGS 61

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA+AK EI   L+  G + +   D+  E   +K   +    +     + +       
Sbjct: 62  REAIAAAKCEITAALKPDGVVVIPAGDALLESALSK---VWSGRVVRVRLADDTPVAADC 118

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                        L+  +  +     G H A+N+L+ L +   L  D  +A         
Sbjct: 119 IGVIDAG-----HLEVGAHRLPLPLEGRHNARNVLLALAVADQLGVD--SASLNAMEVSV 171

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR +R      QG  TL+DE+YNA+P ++ AA+++LS       GRR AVLG M E+G
Sbjct: 172 PGGRNRRLV----QGRLTLLDETYNASPEAVMAALALLSSQP----GRRFAVLGTMLELG 223

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             S   H D+A   +   +  + +   G    A+ +A     H+    + +     ++  
Sbjct: 224 AQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGLPHLAVVSSPEDAAKPLKEW 283

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L  GDVV++K+S      RL+ LL
Sbjct: 284 LRAGDVVLLKASRGVALERLLPLL 307


>gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M13399]
          Length = 492

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDGYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      +      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 183/437 (41%), Gaps = 22/437 (5%)

Query: 25  GFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             +  ISIDSR I +P   F A+KG  +DGH F+  A + GA   +V+ D         I
Sbjct: 23  AVIKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQPPYPLKDI 82

Query: 84  PVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +  V+D L A   LA A R  R++  ++AI GS GKT  K++L   L+   K  A   S
Sbjct: 83  ILLRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMASPES 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ IGVPL+L ++    +  + E   S  GE+  L  ++ P   ++T+I   HL     
Sbjct: 143 FNSQIGVPLSLFKIKDSHEIALVEAAFSEPGEMEVLADIIMPEHVILTSIGAKHLHTLGS 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E  A    ++ + L+K     +     F   L+ ++      T          D +L  
Sbjct: 203 LETTALEMVKLLQPLKKDNWALIPSTPLFGPHLQERTSRCLFWT--------QPDSRLPH 254

Query: 263 WKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMTLG-IVSILTADVDTAIKAL 317
               S    M     V    + +       G+  + +++ T      +      T  + L
Sbjct: 255 AISASTTPQMTLPYSVHFPDQYLFQGEMTKGFSYSLDLINTACKSAWLFDLPSHTISEVL 314

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             +  +  R + ++          I++ Y+++P SM  A++ L  ++ +   ++  + G 
Sbjct: 315 QTYQFEPMRTEIWKAPT---GMLFINDPYSSDPQSMDQALTRLQYLASNE--KKTLIFGG 369

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFL 435
           +  + +  ++ +  +   ++  +I H+ L G      +L   L     + +  T+     
Sbjct: 370 LKGISDQRENEYRRIGLAIAQSHIQHLMLIGPLSDFQSLVSKLLPHTTISFYPTIAHALR 429

Query: 436 FIQSSLVDGDVVVVKSS 452
            ++       VV++K +
Sbjct: 430 HLREVEDPRQVVLIKGA 446


>gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
          Length = 459

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 193/464 (41%), Gaps = 38/464 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L  +       +P     G++  S  + P +AFFA+ G    G  +   A+Q GA  +V 
Sbjct: 12  LSGVPATEARALPSA--RGVAFHSARVRPGDAFFALPGASSHGLRYADAALQAGAAFIVS 69

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +                V D    L +L   AR   +  +I +TGS GKT+T+ +L    
Sbjct: 70  DRPHPRG--------LTVPDPARLLLQLGRVARAALQGPVIGVTGSAGKTSTRALL---- 117

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++    +A  G++N  + +  TL            D  + ELG+ H GE+  L  L RP 
Sbjct: 118 AAALGAHATRGNFNTPLALAQTLVEAWLEDRTGAHDRLVLELGIDHTGEMDELVELTRPT 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T IAPAHL     +E +A  K ++  G+      +++     F     ++   G  
Sbjct: 178 LGVVTLIAPAHLDGLGSVEGVAREKFKLLTGVRH---AWVSAQAYPFLTPAQRAALQGRL 234

Query: 246 TIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           T+Y   G+      + ++       +     L    + V        +A+N L  L + +
Sbjct: 235 TVYGLDGRETPTGGEAKRVTGHFASAAGGGALHALGLRVPLALPSPALAENALCALAVAA 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D   A   L     + GR +R++     G  TL+D++YN+NPAS++AA        
Sbjct: 295 HLGVDPAAAAARLQGAVLEPGRLQRHQL----GALTLLDDAYNSNPASVRAA----LTAL 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                   AVLGDM E+G  S   H  LAE      +  V   G  + AL +A PR++++
Sbjct: 347 AALPRPHTAVLGDMLELGAASAELHRALAE--DTAALDAVVAVGPAMRALAEADPRAVYL 404

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +        + + + +   ++VK S      RL   LL  +
Sbjct: 405 EAFD-----LEALLALVPERGTLLVKGSRGVRLERLTEALLRRY 443


>gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Bacteroides fragilis 638R]
          Length = 485

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 172/476 (36%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++     + +  +  +    V D   A+ K          SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG+  ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAARAS-DRVIITS 401

Query: 409 FHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           chlorochromatii CaD3]
 gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 516

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 181/496 (36%), Gaps = 64/496 (12%)

Query: 3   PLWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           P  T    + A+Q   +         +  +  +S DSR +     F A++G   DGH FI
Sbjct: 14  PSLTVGAFITALQAVEVTEQAGACHMEHCITAVSSDSRDMIEGALFVAVRGFCTDGHRFI 73

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITG 115
             A+++GA  ++V  ++  SI    +    V D   AL  +A         +   I +TG
Sbjct: 74  ESAIERGA-CIIVCEELPQSITHGCL-YLRVIDARKALAHVAALFYGNPAKQLRFIGVTG 131

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVD 159
           + GKTTT  ++T  L++       IG+    IG                  L    +   
Sbjct: 132 TNGKTTTSRIITEMLTAFAVPSGYIGTNLCRIGKRDIPLERTTPEAHELHALFALMVEAG 191

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E+    L   R   + +R   A+ T +   HL     ++  A AK  +F+ L+ 
Sbjct: 192 CKAVVMEVSSHALLLQR--VYGLRFDAALFTNLTQDHLDFHHTMQAYAEAKQLLFDQLQP 249

Query: 220 TGTIFLNYDDSFFELLKAK------------SHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            G   +N DD++  L+  +            ++   +     +G+    DFQ        
Sbjct: 250 DGVAIVNTDDAYAPLMLQRVAPSQRVCCTLQANVPSVLQCPQYGQ----DFQAEVRHASL 305

Query: 268 EQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             + ME++   G++  +     G +   N+L        L        +AL+  H  +GR
Sbjct: 306 AATEMELRFPKGETELLTVGLAGSYNVMNVLQAAATGYCLGLQPAAICRALAAVHSVDGR 365

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R            I   Y   P +++ A+  L  +    E R + + G       L +
Sbjct: 366 MERV---GRPNLPYQIFVDYAHTPDALQKALETLKALKGE-EARLMVLFGCGGNRDRLKR 421

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFI 437
                +A  L+      V L+  +            ++  +  + H   ++  + +   I
Sbjct: 422 PIMGSIAASLA----DVVILTSDNPRDESPDAILDEIEQGMQGAAHQRIADRAEAIRTAI 477

Query: 438 QSSLVDGDVVVV--KS 451
            S L  GDV+++  K 
Sbjct: 478 -SQLQAGDVLLIAGKG 492


>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
 gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
          Length = 507

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 169/480 (35%), Gaps = 49/480 (10%)

Query: 5   WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL    +   S+       ++GI  DSR +   + F    G   DGH F+  A +
Sbjct: 1   MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
           +GA ++V   +    IG     V  V D    L+ L  A   R      ++ ITG+ GKT
Sbjct: 61  QGAVVIVATKE--VEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGV-----------------PLTLARMPVDVDFG 163
           TT  +L     S+      IG+ +  I                    L    +    +  
Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
           + E+    L + R     +   +AV T +   H+      +    AK ++F  +      
Sbjct: 179 VMEVSSHALAQDR--CKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARH 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD         S       + +FG  K+AD      +    ++ + V+    ++
Sbjct: 237 RKVVNIDDPNAGYFV--SLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNI 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  F +
Sbjct: 295 EISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPG---RVELVDEEQPFAV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y   P ++   +  + +  P    R I V+G     G+  +     +A++ +  + 
Sbjct: 352 IVD-YAHTPDALSRLLDTVRECGP---RRIITVVGC---GGDRDRGKRPVMAKIAAAKSE 404

Query: 402 SHVWLSG----FHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++ S           + +    +     V   +          +   +GD VV+  K 
Sbjct: 405 VCIFTSDNPRSEDPRKFERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKG 464


>gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
 gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
          Length = 481

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/478 (20%), Positives = 173/478 (36%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+LQ +            V+GI  DSR +  +  F A +G   DGH +I  A++ G
Sbjct: 1   MMLDDILQNVILLKTIGNIDINVSGIQFDSRKVEAENVFVATRGTASDGHQYIATAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V     + S  + +I    V+D   AL K+A A      +K T++ +TG+ GKTT 
Sbjct: 61  AVAIVCEE--LPSEINPNITYVKVEDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             +L      +      + +  N++      A                      ++   E
Sbjct: 119 ATLLYQLFRELGHKSGLLSTVCNYVNDLAVEATHTTPDALALNALLAQMVDAGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     +    A+ T I   H+      E    AK + F+ L        N
Sbjct: 179 VSSHSIDQHRI--SGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFFDNLSTDAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   S A      Y++     ADF+ R  +   E   +++       EV   
Sbjct: 237 ADDKNGLVMLQNSKAKK----YTYSLRGMADFKTRILEHGFEGMLLDMN----DKEVNVS 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+    G   +L  D    ++ +S  H   G   R+    +   +T I + Y
Sbjct: 289 FIGKFNASNLSAVFGAAVLLGQDELEVLRIISSLHSVSG---RFETLHSPAGYTAIVD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   I  ++QI   G GR I V+G     G   +     +A      +   +  
Sbjct: 345 AHTPDALVNVIGTINQI-LQGNGRLITVVGC---GGNRDKGKRPMMAREAVNGSWKAILT 400

Query: 407 SG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S              +LA  D + ++  +   +  + +     +    GDVV+V  K 
Sbjct: 401 SDNPRFEEPQEILNDMLAGLDVVEKAKSLTIVDRREAIKTA-CALAQAGDVVLVAGKG 457


>gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 174/490 (35%), Gaps = 61/490 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L Q +   ++     G V+G+  DSR + P   FFA++G   DGH FI  A+ +G
Sbjct: 1   MNISVLCQILDPSAVSGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV+ +      G   +    V D   A+   A A          ++ ITG+ GKTT 
Sbjct: 61  AVAVVMESPHTLPTG---VTGILVKDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTV 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV---------PLTLARMPV-------DVDFGIFE 166
             ++   L +     A +G+ +              P ++  M           D  + E
Sbjct: 118 SYLVESILLAAGYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIF 224
           +    L +       V   + V T + P HL     +E    AK  +F GL       + 
Sbjct: 178 VSSHSLEQ--RRVDGVWFDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVV 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DDS+   L A   A     +   G +   D                ++    +  + 
Sbjct: 236 ANSDDSWGARLGAMLPA-----VIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQ 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G +  QN+L   G+ + L     T  KAL+      GR +    A  +G   L+D 
Sbjct: 291 SPLVGDYNLQNLLCAAGVGAALDMVPATIAKALAQAPQVPGRLES--IANERGALVLVD- 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVL 396
            Y     +++  +  L Q+ P    R + V G   +        MGE++     D+A + 
Sbjct: 348 -YAHTGDALENVLVTLRQLQP---RRLLCVFGCGGDRDAGKRPVMGEIAARL-ADVAILT 402

Query: 397 SLYNISHVWLS-------G-----FHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVD 443
           S    S   L+       G         +L+ A   +   + S         F  S L  
Sbjct: 403 SDNPRSEDPLAIMQQVESGLRRIHEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQP 462

Query: 444 GDVVVV--KS 451
            DV++V  K 
Sbjct: 463 DDVLLVAGKG 472


>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 493

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 175/478 (36%), Gaps = 54/478 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+    I  +    V  I +DSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 8   AEELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +VV   ++       +I    V D   A  L             T+I +TG+ GKT+   
Sbjct: 68  IVVTERELPLGE---TIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIFELG 168
           ++   +  + +  A  G+   ++              L+  +M              E+ 
Sbjct: 125 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
              L   R     V   IA+ T +   HL     +EE   AK  +F    + LEK   + 
Sbjct: 185 SHGLALGRL--AGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVV 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           LN DD++ E   A +       ++++G K++ ADF+    +     +  +V++      V
Sbjct: 243 LNADDAWSERYAAMTP----FPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRV 298

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + +G     N+L  +         ++  I+ +    P +GR ++            + 
Sbjct: 299 KMNLLGEFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKV----CSDLPVQMF 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ AI       P+ +G+ I ++G     G   +S    +AE  S     +
Sbjct: 355 VDYAHTPDAIEKAIEA---AQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKAS--AAEY 406

Query: 404 VWLSGFHVLA------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+              D     +H +++                  GD+++   K 
Sbjct: 407 VILTTDDPRYEDYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKG 464


>gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 492

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 160/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      +      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L    P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDKVLDVLEKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella kingae ATCC 23330]
          Length = 491

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 171/450 (38%), Gaps = 39/450 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           +  DSR I P + F A +G + DG ++I  A++KGA  V  + D       +  IP   +
Sbjct: 26  LHSDSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPI 85

Query: 89  DDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--IGSYN 144
            ++         +V   +     II +TG+ GKT+  + L  A+  ++   AC  IG+  
Sbjct: 86  AELRQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAIIGTVG 145

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N     L              TL R           + +S  G  +F  + V    A+ T
Sbjct: 146 NGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTAIFT 205

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL   + +EE   AKA +F          +N DD F   L A+     +  +YS+
Sbjct: 206 NLTRDHLDYHNSMEEYGEAKARLFHWQGLQN-AIINSDDEFGAKLVAELKQSSL-HVYSY 263

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +++AD ++ ++   ++   + +Q    +  V    +G   AQN    LG +       
Sbjct: 264 GFNEHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEGYAF 323

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A+KAL+      G   R  C + +    ++ + Y   P +++ A+S L +I    E +
Sbjct: 324 QAALKALAQIRAATG---RMDCIIRENKPLVVVD-YAHTPDALEKALSTLREIQ-QPESQ 378

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHV 424
              V G         +     +A          V ++  +         + D LP   + 
Sbjct: 379 LWCVFGCGGNRDRGKRPLMGAVA----AQGADKVVVTSDNPRMEDPNAIIADILPTVPNA 434

Query: 425 HYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
              +           +     D+V++  K 
Sbjct: 435 ALVQVDRQTAIEQTIAQAAPQDIVLIAGKG 464


>gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 494

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/478 (18%), Positives = 165/478 (34%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L + I+   +       +  I+ DSR+      F A KG   D H F    V +G
Sbjct: 1   MKANELFEKIKSKQVLGSLDREITDITTDSRTAEEGSVFVATKGYTVDSHKFCQDVVNQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             L+VV ++         + V     V  +L    +      + T   +TG+ GKT+   
Sbjct: 61  CKLIVVESEQEVEGDVTQVIVPKTRRV-ASLIVHKLYNYPSEQLTTYGVTGTNGKTSIAT 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGI--------FELG 168
           M+      + K  A +G+    I   +T           +   +   +         E+ 
Sbjct: 120 MIHQIHRKLGKGSAYLGTNGFQINETVTKGENTTPETVTLTKKIHEAVEAGAESMTLEVS 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
              L   R     V   +A+ + +   HL     +E    AK+ +F    E L K     
Sbjct: 180 SHGLALGRL--SGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLRKEKFAV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD F E L + +       ++++G  + A F+  + ++    +  +      +  V 
Sbjct: 238 VNADDDFSEYLTSVTPY----EVFTYGIHRPAQFKAERIQESLTGASFDFVTPDGTFHVD 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      +   +  +S   P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMTAVWGTGTPMQEIVDVVSQLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      ++  I     + P  + + I ++G M   GE   +   ++ +  S     +V
Sbjct: 351 -YAHTTDGIEKLIDA---VKPFVKQKLIFLIG-MA--GERDLTKTPEMGKQASR--ADYV 401

Query: 405 WLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            L        +V Y++  +G+   I      GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHDNYVEYTDRAEGIRHAI-DVAEPGDTVVLASKG 458


>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
 gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
          Length = 485

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 170/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++     V       +    V D   A+ K          SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILCEELPVELAEG--VTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG+  ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAARAS-DRVIITS 401

Query: 409 FHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
 gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 181/477 (37%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + LL+AIQ   +       + GI+IDSR +   + F A++G   DGH +I  A++KG
Sbjct: 1   MLLNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +       I    V D   A  K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AVAVLC--EDMPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL R+          +   E
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK + F+ + K      N
Sbjct: 179 VSSHSIAQKRI--SGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     +Y++     ++F+ R  +   E   ++      + E+   
Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSNFKGRVLESHFEGMLLDFN----NHELAVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS  HP  GR    R    +G   ++D  Y
Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSP--KGVTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  
Sbjct: 345 AHTPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIIT 400

Query: 407 SG-FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
           S        +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Weiss]
 gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum MopnTet14]
 gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 483

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 169/473 (35%), Gaps = 48/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR     + F A +G   +G+D+   AV+ GA 
Sbjct: 3   LDQLLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            ++ +         LS+     +D+  L A            +  +I +TG+ GKTT   
Sbjct: 63  AILSSLYNPF----LSVVQIVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSA 118

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELG 168
           +    +    +    +G+  +                I +    A M   ++   + E+ 
Sbjct: 119 LARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R           V+T ++  HL      EE   AK ++F  L + G   +N D
Sbjct: 179 SIGLALGR--VRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVAVVNSD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             + +     S A G+    S+   + AD++    K  S  S  ++  QG         +
Sbjct: 237 CEYAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQGNVFSCETSLV 292

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+L  L +V  IL  D    +  +      +GR +             I   Y 
Sbjct: 293 GEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCP-----IYIDYA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
             P ++     +LSQ+ P  +GR I V G     G+   S    +A+V   Y  S V   
Sbjct: 348 HTPDALDNVCKILSQLLPA-DGRLIIVFGC---GGDRDHSKRPIMAKVAETYGFSVVTSD 403

Query: 407 ------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +        +V  S+    +   I  +L D D+V+V  K 
Sbjct: 404 NPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMAL-DKDIVLVAGKG 455


>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 488

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 167/476 (35%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL++ +Q   I       ++ I  DSR       + A+KG   DGH FI  AV +
Sbjct: 2   IMNLEDLIKKVQILDILGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFIDAAVAQ 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
             G   V  +         I    V+D   AL +LA         K  +I ITG+ GKT+
Sbjct: 62  --GAAAVVCNAFPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLIGITGTNGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFE---L 167
              +L      +    A I +    I              +TL ++  +      E   +
Sbjct: 120 VTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEAVEAGCEYAFM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +   IA  T I+  HL       E    K   F+GL        N 
Sbjct: 180 EVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGLNPDAVAITNL 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   +++   + A    T  S+     AD+  +  +       M +   GK        
Sbjct: 240 DDKNGKIMLQNTKA----TRKSYALKTMADYHGKTTETDFNG--MLLNFDGKEF--WTTL 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N+L+   I        D  +KA+S+    +GR +  +   + G F +ID  Y 
Sbjct: 292 TGRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKS--DGGIFFVID--YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +  +++I    E R I V G     GE  Q+   ++ ++ +  +   +  S
Sbjct: 348 HTPDALDNILDSINEIRTKNE-RLITVFGC---GGERDQTKRPEMGKISTRKSTLTIITS 403

Query: 408 --------GFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                   G  +  ++  +    +  Y                    D+V+V  K 
Sbjct: 404 DNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKDIVLVAGKG 459


>gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
 gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
          Length = 494

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 167/474 (35%), Gaps = 46/474 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DL     G +     +  V G+++DSR +     F A+ G +  G  FI  A+++GA
Sbjct: 7   TLSDL-----GLTASGGRKADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGA 61

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++ +         +     + V   DD    L   A         T+IA+TG+ GKT+
Sbjct: 62  TAILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGS----------YNNHIGVPLTLARMPVD-----VDFGIFE 166
                      +    A +G+           N+    P+TL R   +     V     E
Sbjct: 122 VSTFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAME 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
                L + R     VR   A  T     HL      E    AK  +F   L    T  +
Sbjct: 182 ASSHGLDQRRL--DGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     +   ++ LGI  +   G+S++AD QL      +    +    +GK+     
Sbjct: 240 NLDDPKGPEVAEIAYDLGI-DVIGVGRSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRL 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + IG   A N+L+   +V    AD D     L       G   R   A  +     +   
Sbjct: 299 NLIGGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRG---RMELAATRDNGAAVFVD 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P    A  + LS + PH  GR IA++G   +     +    +     ++     V+
Sbjct: 356 YAHTPD---AVATALSAMRPHVMGRLIAIIGAGGDRDATKRPLMGE----AAMREADLVF 408

Query: 406 LSGFHVLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +   A+ R      +             L    +L  GD +++  K 
Sbjct: 409 VTDDNPRSEDPAVIRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKG 462


>gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
          Length = 486

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 169/473 (35%), Gaps = 48/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR     + F A +G   +G+D+   AV+ GA 
Sbjct: 6   LDQLLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAI 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            ++ +         LS+     +D+  L A            +  +I +TG+ GKTT   
Sbjct: 66  AILSSLYNPF----LSVVQIVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSA 121

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELG 168
           +    +    +    +G+  +                I +    A M   ++   + E+ 
Sbjct: 122 LARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVS 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R           V+T ++  HL      EE   AK ++F  L + G   +N D
Sbjct: 182 SIGLALGR--VRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVAVVNSD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             + +     S A G+    S+   + AD++    K  S  S  ++  QG         +
Sbjct: 240 CEYAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQGNVFSCETSLV 295

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+L  L +V  IL  D    +  +      +GR +             I   Y 
Sbjct: 296 GEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCP-----IYIDYA 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
             P ++     +LSQ+ P  +GR I V G     G+   S    +A+V   Y  S V   
Sbjct: 351 HTPDALDNVCKILSQLLPA-DGRLIIVFGC---GGDRDHSKRPIMAKVAETYGFSVVTSD 406

Query: 407 ------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +        +V  S+    +   I  +L D D+V+V  K 
Sbjct: 407 NPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMAL-DKDIVLVAGKG 458


>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
 gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
          Length = 485

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 173/477 (36%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L+A+    I       VNGI +DSR +     F A+KG   DGH++I  A++ G
Sbjct: 1   MKLENMLKAVNAQQIIGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A ++V   + +      ++    + D   A+ KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ATVIVC--EQLPVQIESNVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLA----RMPVDVDFGIFEL 167
             +L             I +  N+I             P+TL     RM  +    +F  
Sbjct: 119 ATLLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + ++ L      + T I   HL      E    AK   F+ L K      N 
Sbjct: 179 VSSHSVVQKRISGLT-FAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKQAFALTNL 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     + ++      DF+ +  +   +   +++     + EV    
Sbjct: 238 DDKNGTVMTQNTQA----KVAAYSLHSLCDFKGKVLEDSFDGMLLDIN----NREVNVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  +  LS+  P  GR    R    +G+  ++D  Y 
Sbjct: 290 IGRFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFDAKRSP--KGYTAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +  + ++   G G+ I V+G      +  +       E         V ++
Sbjct: 346 HTPDALVNVLEAIHEV-LRGRGQVITVVGAGGNRDKGKRPLMAK--ESAQRS--DKVIIT 400

Query: 408 GFHVLAL--KDALPRSIHVHYSETMDGLFLFIQS---------SLVDGDVVVV--KS 451
             +      +D +   +     + M  +   +                DV+++  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLSKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKG 457


>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 502

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 152/418 (36%), Gaps = 38/418 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + +   +I       +  +  DSR+I P   F  + G + DGHD+I HA+Q G
Sbjct: 1   MNLKSLTERLILKTITGSTAVEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  ++   ++    G+  I    V D    L     +       +  +I ITG+ GKTTT
Sbjct: 61  AVAIMAEKELPELPGN--ITRITVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVD--------------FGIFE 166
             M+   L+   +    IG+    I   V  TL   P  +               +G+ E
Sbjct: 119 THMVDKVLNDSNRKTGIIGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----G 221
           +    L   R           V T ++  HL     +E   + K  +F  L  +      
Sbjct: 179 VSSHGLDMGR--VRGCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQK 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD+       ++ A     I ++G    AD +    +   +     V+    S 
Sbjct: 237 KVVLNADDAASSYYGKRTSA----QIVTYGIHNPADVRALHIQNTGDGCRFIVETPWGSS 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +      G H   N L  +    +    +     +L  F    GR +      ++ F  +
Sbjct: 293 DFTMKVYGVHNVYNALAAITTCLLEGIPIQEIRNSLQDFAGVHGRFQ--EIKTDRSFRVV 350

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +D  Y  NP  +KA +    +I+    G+ I V+G   E   L +    D+A   S Y
Sbjct: 351 VD--YAHNPDGLKATLLSAKEITS---GKMICVMGCRGERDRLKRPIMADIAASYSDY 403


>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 484

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 177/477 (37%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L AI    +       V  +  DSR       F A++G H DGH F+  A+Q+
Sbjct: 1   MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLFVEKAIQQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTT 121
           G  L++V  + + +  S  +    V D   AL             +  ++ +TG+ GKTT
Sbjct: 61  GCTLIMV--EEMPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---GVPLT-----------LARMPVDVDFGIFEL 167
              +L    +++      + +  N I    +P T           L R  VD       +
Sbjct: 119 IATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +R    + + I   HL      +    AK + F+ L++      N 
Sbjct: 179 EVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+    ++   + A       ++G    ADF+ +  +   +   + +    +  EV    
Sbjct: 239 DEKNGSVMLQNTFAHKK----TYGLKGVADFKAKIIESHFDGMLLNI----EGHEVWVKL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G   +L  +    + ALS     EG   R+    ++     I + Y 
Sbjct: 291 VGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEG---RFEAITSKNGVIGIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S ++ +    + + I VLG     G+  ++   ++AEV +  +   V ++
Sbjct: 347 HTPDAVANVLSTINNLRKKEQ-QIITVLGC---GGDRDKTKRPEMAEVAAKMS-DKVIIT 401

Query: 408 GFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +KD  P     R  +V                   GD+V+V  K 
Sbjct: 402 SDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKG 458


>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 487

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 105/472 (22%), Positives = 184/472 (38%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  DL   +    +   P   +  I++DSRS++P   F A +G  +DGHDF+  A+ +
Sbjct: 1   MLTLRDLHGLVPSARLVGDPSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  ++V  ++      L IP   V  V  A+  L      R   +  ++ ITG+ GKTT
Sbjct: 61  GAVALLVQHEVA-----LDIPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167
           T   +   LS   +    IG+     G                  L R  VD       +
Sbjct: 116 TSYFIDSILSLAGRRTGLIGTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVM 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +         I V T ++P HL     IE+  +AKA++F   E+T    +  
Sbjct: 176 EVSSHGIDQHRIDGTSFRIGVFTNLSPEHLDYHGTIEQYYAAKAQLF-LPERTKQAVIGT 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286
           D  +   L  +     +    ++G +  +D+++   +     +   V + G +   +   
Sbjct: 235 DTEWGVRLATQVRIPAV----TYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVP 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N    + +   L  + DT  + L+  H   GR +R      Q F  ++D  Y
Sbjct: 291 IYGIHNAYNAAAAVAVAEALGIEGDTIERGLAECHQVAGRFQR--IDAGQPFTVVVD--Y 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++A I+    +SP  +GR I V G     G   +    +L    +  +++ +  
Sbjct: 347 AHTPDSLRALIATARALSP--KGRVILVAGA---RGRRDRLKRPELGRAAATADVAILTA 401

Query: 407 --SGFH--VLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV 449
              G       +   L  ++ V + +        G          + DVV++
Sbjct: 402 DNPGDEDPGEIVAQLLAGTLDVDHKQIIVELDRRGAIGHAIEIAEESDVVLI 453


>gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
 gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
          Length = 514

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 176/489 (35%), Gaps = 64/489 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL  I    +       +  +  DSR ++  + F A+ G   +G DF   A+++GA
Sbjct: 11  TLKALLHGIA--EVSAAADRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGA 68

Query: 66  GLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVG 118
             V+    +          +  + +  +  +   +++L            TI  +TG+ G
Sbjct: 69  VAVLSEQSIEEPSLLESASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDG 128

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           KT+    L  AL+++    A +G+  +     L       +   G  E            
Sbjct: 129 KTSVAHFLAQALTALNPPVALVGTLGS---GNLDQLHKTQNTTPGAVELQQLFSDFREQG 185

Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEK 219
                + +S  G  +   + V   +AV+T +   HL     + + A AK ++F   GL+ 
Sbjct: 186 IRHVAMEVSSHGLDQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKA 245

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWME 273
           +    LN DD F  +L  +        +Y +G   +      A  +    +   +    +
Sbjct: 246 S---VLNCDDDFGCMLALELEER--LPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFD 300

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V   G+   V    +G   A N+L  +  +  L   +  A++ +S   P  GR +  +  
Sbjct: 301 VSSGGQRYTVDVALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRMECLKLP 360

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   ++D  Y   P +++     LS +  H  GR   V G   +  +  +      A
Sbjct: 361 --NGAVAVVD--YAHTPQALE---QTLSSLREHSGGRLFTVFGCGGDRDKGKRPLMGRAA 413

Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           E  S      +WL+  +  +         + + L      H   + +        S   G
Sbjct: 414 ERFS----DALWLTDDNPRSEKPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPG 469

Query: 445 DVVVV--KS 451
           DVV++  K 
Sbjct: 470 DVVLIAGKG 478


>gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Legionella longbeachae NSW150]
          Length = 483

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 156/459 (33%), Gaps = 49/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSL 81
              + G+  DSR I P + F A  G   DG  FI +AV  GA  V  +        +   
Sbjct: 17  DCLITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAVAYDPADFPLNCVLPE 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+P   V ++   L  +A            I  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  SVPCIPVPELSTQLPNIAKQFYDNPACFLNITGVTGTNGKTTIAYQLAQAHHLLGQKAAY 136

Query: 140 IGSYNN-----------HIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                   L L ++       D+     E+    L + R     + 
Sbjct: 137 IGTIGQGNVNELRLVDNTTPDSLCLQKLLHQYKSQDMRQVCMEVSSHALAQHR--VDALE 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            + A+ T +   HL     +E  A AK+ +F   E      +N DD++ +++ A      
Sbjct: 195 FNQAIFTNLTLDHLDYHHSMENYARAKSLLFAR-ESLEWAIINQDDAYHKIMAAAIKPQV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   ++G  ++ D + + W      + +EV        +    +G     N L     +
Sbjct: 254 KK--LTYGIHQDCDVRAKNWSMDIYGTEIEVHSPWGKHHIKIKSLGQFNIYNSLAIFSSL 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +  +  ++      GR +             +   Y   P +++ A+  L+Q+
Sbjct: 312 LAANYIPEQVVDVMAQLKAAPGRMEIV------AHSPYVLVDYAHTPDALENALMTLNQL 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
               +GR   V G     G+  ++    + +V        + ++  +            +
Sbjct: 366 K---KGRLWVVFGC---GGDRDKTKRPIMGKVADKL-ADEIVITSDNPRTEEPQIIINEI 418

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S  V      +    +      + DV+++  K 
Sbjct: 419 SKGIALSTKVIQLVNREEAIAYALDKADENDVILIAGKG 457


>gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
 gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
          Length = 477

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 164/474 (34%), Gaps = 56/474 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I            +  ++ DSR I     F AI G  +DGH FI  A+  G
Sbjct: 1   MNLTDILDKIDYIDYTKNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTT 122
           A  +VV  D+        I    V D   AL +++  V      K  +I +TG+ GKTTT
Sbjct: 61  ANTIVVTEDV---TEIDDINYIKVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFE 166
             M++  L  +      IG+    IG                       +   +D  + E
Sbjct: 118 SSMISHILEHLDSPCTNIGTNGTFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L   R     +   +AV+  ++  H+     +E    AK  +FE  +K      N
Sbjct: 178 CSSHGLYLHRL--DGIDFDVAVLNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IAN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +    KA+         Y+F     +DF+    +    +   E+    K+++ V +
Sbjct: 233 VDDEYGRKAKARFEDA-----YTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N +  +  V++L  ++    K+L  F   E    R+    N     ++ + +
Sbjct: 284 RFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEA---RFEFVKNDMGINIVID-F 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P + +     +       + R+IAV G M   G+ +     ++ ++ +  N+  V  
Sbjct: 340 AHTPKAFENIYKSV-----PNDKRKIAVYG-M--SGDRTSEIRHEVGKISAENNVFSVVT 391

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +        + +           +      +               GD V++  
Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEIANKGDFVLLLG 445


>gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 493

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 171/456 (37%), Gaps = 42/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79
              + G+++DSR +     F A+ G    G +FI +A++ GA  ++ + +        + 
Sbjct: 20  DPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTDAEGARIAADELA 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +    +  V D    L   A         T++A+TG+ GKT+    +    + +      
Sbjct: 80  ASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVRQIWTELGHMAVN 139

Query: 140 IGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+            +    P+TL R   +     V     E     L E R L   V  
Sbjct: 140 LGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGL-EQRRL-DGVHL 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  +     HL   +  E   +AKA +F+  L + GT  +N DD     ++  + A G
Sbjct: 198 TAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGAAIRDIAQARG 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +T+ + G S +AD  L   +  +    +    +GK+ +   + IG   A+N+L+  G+V
Sbjct: 258 -QTVLTVG-SGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAENVLLACGLV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +     L       G   R + A  +     +   Y   P ++  A+  L   
Sbjct: 316 IASGDEAEHVFDTLPHLTTVRG---RMQLAATRSNGAAVFVDYAHTPDAVATALQALR-- 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA- 417
            PH  GR IA++G   +     +     +    +  N   V+++          A++ A 
Sbjct: 371 -PHVMGRLIAIVGAGGDRDSTKRPL---MGRAAAE-NADIVFVTDDNPRSEDPAAIRAAV 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +             L    +L  GD +++  K 
Sbjct: 426 MAGAPDATEVADRAEAILRGIDALQPGDALLIAGKG 461


>gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
 gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
          Length = 483

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + GIS DSR I P   F A++G   DG  +I  A+++GA  +V  TD    + +LS+P+
Sbjct: 20  EITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIV--TDCNVVLENLSVPL 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   +L   A         T++A+TG+ GKT+    L    + +    A IG+   
Sbjct: 78  LRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASIGTLGV 137

Query: 146 -----------HIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          P+ L R+        V     E     L + R     VR   A  
Sbjct: 138 VSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRL--DGVRLTAAAF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   H+   + +E+   AK  +F+  L +  +  +  DD + + +   +     + + 
Sbjct: 196 TNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVI-DTLTQARRHVL 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+       + + +    +  +E +L+           G     N LM  G+      
Sbjct: 255 TIGRKGQF-ITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMAAGLAISTGI 313

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D   ++L       GR +      N     +    Y   P +++    VL  + P  +
Sbjct: 314 SPDKVFRSLETLQGAPGRLELVGKTENNASVYI---DYAHKPEALE---QVLLSVRPFTQ 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSI 422
           GR I V G   +  +  +     +AE         V ++  +          KD L  + 
Sbjct: 368 GRLILVFGCGGDRDQGKRPLMGKIAE----NKADIVIITDDNPRTEMPAKIRKDILQAAP 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        +    L  GD +++  K 
Sbjct: 424 KAIEIADRGEAITYAVGLLKAGDTLIIAGKG 454


>gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 484

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 172/477 (36%), Gaps = 54/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L  I    +       ++ I  DSR + P   F A++G   DGH++I  A++ GA 
Sbjct: 4   LSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            +V       +IG   +    V D   AL ++A         K  ++ +TG+ GKTT   
Sbjct: 64  AIVCEDLPAHTIGE--VAFMMVADSAVALGQIAANFYDHPSDKLKLVGVTGTNGKTTVAT 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELG 168
           +L      +      + +  N I   +  A                      D+   E+ 
Sbjct: 122 LLYQLFHDLGYKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGCDYCFMEVS 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              + + R     ++    + T +   HL      +    AK   F+ L K+     N D
Sbjct: 182 SHAVAQHRI--EGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKKAFFDALPKSAFALTNID 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     AD++ +  +       +++     + EV    +
Sbjct: 240 DRNGNIMLQNTRAQRK----TYALKSLADYKAKILENQFGGLLLDID----NEEVWFKMV 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L  D    + +LS     EG   R+   ++      I + Y  
Sbjct: 292 GSFNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEG---RFDYIISPNKVIGIVD-YAH 347

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +S +  I    E + I ++G     G+  ++    +A+V   ++   V L+ 
Sbjct: 348 TPDAVQNVLSTIHDIRKGTE-KVITIIGC---GGDRDKTKRPIMAKVACQWS-DKVILTS 402

Query: 409 F------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         + A  DA  +   +  ++  + +          GD++++  K 
Sbjct: 403 DNPRSEVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTA-CHLASPGDIILLAGKG 458


>gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
 gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
          Length = 483

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/470 (20%), Positives = 174/470 (37%), Gaps = 42/470 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +DLL  +    +    +  V G+++DSR + P   F A+ G    G DFI  A+  G
Sbjct: 1   MTLNDLL--LDEGLVVEGGEQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +++ +  + A      +PV  V +    L ++A     R    I+AITG+ GK++T E
Sbjct: 59  ASVILTDEPVEAP-----VPVIAVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL------------ARMPVDVDFGIFELGM--S 170
            L    +      AC+G+     G  + +            A +      G+  LGM  S
Sbjct: 114 FLRQIWAGAGIEAACLGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEAS 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDD 229
             G  +     VR  +   T +   HL       +  ++K ++F E L   G   +N D 
Sbjct: 174 SHGLKQHRMDGVRLQVGAFTNLTQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDS 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +   + A +   G++ + + G  + +D  +R+    +    +    +G+   +    +G
Sbjct: 234 EWGGKMAASARERGLE-VLTMGW-RGSDLAIREITPRAASQSVIFAWKGREHALDIPLVG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L    I         + +  L       GR ++       G   L+D  Y   
Sbjct: 292 EFQILNALGAAAIALSDGVAEASVLDTLKGLAGVPGRLEKV-GETAAGAPVLVD--YAHT 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P  +     +L    PH  GR I + G     G+   S    +  V++     HV ++  
Sbjct: 349 PDGLD---KLLRAARPHTRGRVIVIFGC---GGDRDASKRAKMG-VIAANQADHVIVTDD 401

Query: 409 ----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   A++ A+ +                   + L  GD +++  K 
Sbjct: 402 NPRSEDPAAIRKAVLKGCPRAEEIADRAQAIRHGVAMLKAGDCLLIAGKG 451


>gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 493

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 168/457 (36%), Gaps = 46/457 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIG 79
              ++G+++DSR +     F A+ G    G DFI +A++ GA  ++ + +      A + 
Sbjct: 20  DPDISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTDAEGARIAAAELA 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +    +  V+D    L   A        AT++A+TG+ GKT+    +    + +      
Sbjct: 80  ASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVRQIWTELGHDAVN 139

Query: 140 IGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+            +    P+TL R   +     V     E     L E R L  +V  
Sbjct: 140 LGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGL-EQRRLDGVV-L 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL      E   +AKA +F   L   G   +N DD     ++A + A G
Sbjct: 198 KAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGAEMRAIAAARG 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + + G+    D  L   +  +    +    +GK+ +     IG   A+N+L+  G+V
Sbjct: 258 -QNVLTVGRGP-CDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAENILLACGLV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L       G   R + A  +     +   Y+  P ++  A+  L   
Sbjct: 316 IASGGAPERVFETLPHLGTVRG---RMQLAATRANGAAVFVDYSHTPDAVATALRALR-- 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH  GR +A++G   +     +          ++ N   V ++  +           A+
Sbjct: 371 -PHVMGRLVAIVGAGGDRDPYKRPLMGK----AAVENADIVIITDDNPRSEDPALIRAAV 425

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               P +  V          L    +L  GD +++  
Sbjct: 426 MQGAPGATEVG---DRAEAILRGVDTLEPGDALLICG 459


>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
 gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 179/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV   + +      ++    V+D    + KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVC--ENLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL ++          +   E
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK   F+ L KT     N
Sbjct: 179 VSSHSVAQKRI--GGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     ++++     +DF+ +  +   E   +++     ++EV   
Sbjct: 237 LDDKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEGMLLDIN----NVEVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++  +G+G  I V+G      +  +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEV-LNGKGNVITVVGAGGNRDKGKRPL---MAQEAVKQS-DKVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L          V                    DV++V  K 
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
 gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
          Length = 532

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 148/412 (35%), Gaps = 36/412 (8%)

Query: 5   WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL    +   S+       ++GI  DSR +   + F    G   DGH F+  A +
Sbjct: 1   MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
           +GA ++V   +    IG     V  V D    L+ L  A   R      ++ ITG+ GKT
Sbjct: 61  QGAVVIVATKE--VEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGV-----------------PLTLARMPVDVDFG 163
           TT  +L     S+      IG+ +  I                    L    +    +  
Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
           + E+    L + R     +   +AV T +   H+      +    AK ++F  +      
Sbjct: 179 VMEVSSHALAQDR--CKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARH 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD         S       + +FG  K+AD      +    ++ + V+    ++
Sbjct: 237 RKVVNIDDPNAGYFV--SLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNI 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  F +
Sbjct: 295 EISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPG---RVELVDEEQPFAV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           I + Y   P ++   +  + +  P    R I V+G   +     +     +A
Sbjct: 352 IVD-YAHTPDALSRLLDTVRECGP---RRIITVVGCGGDRDRGKRPVMAKIA 399


>gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 492

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 158/453 (34%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D          +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFEWNPEWEVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +    IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V     + T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSTIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q            +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRATAIRYAVERAASSDIILIAGKG 464


>gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 459

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 188/453 (41%), Gaps = 24/453 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +L  I+G  I       +  ++     I  P    F ++      H  I    ++ 
Sbjct: 5   TLGKILTVIKGTIIQGNSDILIKDVARYYEHIEQPNTLLFLVQ------HRNID--FKRI 56

Query: 65  A----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A      VVV+ ++          V  V D+  A +      R      ++A+TG+ GKT
Sbjct: 57  AQYCPCAVVVDREVKELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVAVTGTSGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS+  K    + S N +    + L R+   +   ++E  +   G+I +   
Sbjct: 117 TTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAPGDITYTCS 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P+I +IT I   HL     ++   +AKAE+   + + GT+ LN DD   E +K    
Sbjct: 177 HFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLILNADD---EKIKTIDT 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +     I  FG      FQ       +      + L     ++   G G H   N L  L
Sbjct: 234 SKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALADL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +  A +ALS F   +               T+ID+++N N AS+KAA++ L
Sbjct: 294 AATHEMGIGITQAAQALSSF---KLLMNHCEIKKGLNQATIIDDTWNINTASLKAAMNTL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +++     +++A++G + ++GE S  +H ++ ++++ +NI ++   G     +      
Sbjct: 351 CELNQQH--KKVALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLANNIATECSL 408

Query: 421 S---IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +     V   E  +G++  +   L +   +++K
Sbjct: 409 NGFHGKVFQFEQTEGVYELLSDILNEETTLLIK 441


>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D4]
 gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides dorei 5_1_36/D4]
          Length = 484

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 179/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV   + +      ++    V+D    + KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVC--ENLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL ++          +   E
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK   F+ L KT     N
Sbjct: 179 VSSHSVAQKRI--GGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     ++++     +DF+ +  +   E   +++     ++EV   
Sbjct: 237 LDDKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEGMLLDIN----NVEVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++  +G+G  I V+G      +  +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEV-LNGKGNVITVVGAGGNRDKGKRPL---MAQEAVKQS-DKVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L          V                    DV++V  K 
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1]
 gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseiflexus sp. RS-1]
          Length = 509

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/419 (20%), Positives = 151/419 (36%), Gaps = 41/419 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H++L+ +   +        + G+  DSR++ P   F A +G H DGH +I  A+++G
Sbjct: 1   MRLHEILKHLCEPAHMPPVNPEIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV   +  A  G + +P   V +   AL  LA         +  I+ +TG+ GKTTT
Sbjct: 61  AAAVVY--EDPAWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMRIVGVTGTDGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDF--GI 164
             + ++AL +       +G+ +  IG  +                 L R   +      +
Sbjct: 119 TFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLRDMAEAGCSYAV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------- 217
            E     L             IAV T +   HL     +E+    KA +FE L       
Sbjct: 179 IEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFNDAA 238

Query: 218 ---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              ++     +N DD    +    +     +   ++    +AD +    +   +     V
Sbjct: 239 APFKQRKIAVVNADDPHHRMFLDAAPVSAER--LTYAVHAHADVRAEDVRSTRDGLRFRV 296

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                + +      G     N L  L +       ++  + AL       GR +R     
Sbjct: 297 TTPWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERVPGVRGRMERIEA-- 354

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            Q F  L+D  Y   P + +    +   + P  EG+ IAV G   E     +    ++A
Sbjct: 355 GQPFTVLVD--YAHTPGAFE---KLFRIVRPLTEGQVIAVFGSAGERDRAKRPLQGEIA 408


>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
 gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 146/375 (38%), Gaps = 32/375 (8%)

Query: 5   WTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                +++ ++  G          + GI +DSR +     F AIKG   DGH FI  AV+
Sbjct: 1   MKLSQVIKCLKDSGEMDVFTNDPEIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
            GA  VV           L++P   V D   +L KL      R   K  II ITG+ GKT
Sbjct: 61  NGAAAVV-----GEEALELNVPYIKVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD--VDFGIFEL 167
           TT  +L   L +  +T + +G+ +N I              L + +M      +F + E+
Sbjct: 116 TTAYILKHILETAGRTCSLLGTVSNIINNREYKTSNTTPDALQIQKMLSKSLDEFVVMEI 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R  T  +     + T +A  HL     +++    K +IF  L+  G   +N 
Sbjct: 176 SSHALEQSR--TEGLELDYGLFTNLAHDHLDYHENMDQYFLDKKKIFTLLKDGGKGVINL 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +S+ E +        I  I   G  +    +       + ++   ++++G+S E+    
Sbjct: 234 YNSWGEKMAEDLQKEKIPLIL-LGDDQCCSIKDVAI---NGRTVFILEMKGQSFEIEFPL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N  M       L  D    IKAL+ F    G   R+   ++      + + Y 
Sbjct: 290 PGHHNVYNAAMAFLTGVDLGIDTADIIKALAGFPGIPG---RFETIIHPSGAKFVVD-YA 345

Query: 348 ANPASMKAAISVLSQ 362
               + +  +    Q
Sbjct: 346 HTVDAFEYCLEAARQ 360


>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 537

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 166/477 (34%), Gaps = 69/477 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +   S+ + P   F A+ G   DGHDF+  A++KGA  +VV    V        
Sbjct: 50  DPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKKTVKDS----- 104

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V++   AL ++A         K  II ITG+ GKTTT  ++   L +       IG
Sbjct: 105 IIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGFKTGVIG 164

Query: 142 SYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185
           + N                 + +   L+ M +D V   + E+    +    F        
Sbjct: 165 TINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDL--FRIEGCFFD 222

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF-----EGLEKTGTI-FLNYDDSFFELLKAKS 239
            AV T +   HL     +E   + K ++F      G +K      +N DD   + L    
Sbjct: 223 SAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERGKALSGIL 282

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               IKT    G     D      +  +      +     +  +    +G H  +N++  
Sbjct: 283 STKCIKT----GSDSECDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNIENIMSA 338

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+ S L    +   K +       G   R     N+   ++  + Y   P ++K   +V
Sbjct: 339 AGVASGLGISSEIIKKGIKSLSVIPG---RLEKINNEAGISVYVD-YAHTPDALK---NV 391

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-------SHVWLSGFHVL 412
           L  + P  +GR I V G   +  +  +    +LA  LS + +       +        + 
Sbjct: 392 LLSLRPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPT--EIIN 449

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQ----------------SSLVDGDVVVV--KS 451
            +   + R+    Y  T   LF   +                +    GDVV++  K 
Sbjct: 450 QIITGIKRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKG 506


>gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2]
 gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
          Length = 514

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 145/426 (34%), Gaps = 52/426 (12%)

Query: 2   NPLW--TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            PLW  +             G  P+  +  I  DSR + P   F A++G   DGHD++  
Sbjct: 11  TPLWRRSLD------PASDPGSDPE--ITSIHNDSRDVKPGGLFIAVRGFKIDGHDYVED 62

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSV 117
           A+++GA  VVV   +             V D   A+  +A            ++ ITG+ 
Sbjct: 63  ALERGAAAVVVQQRVPGKQRM-----VEVADTRKAMASIAARFYDNPSESMCLVGITGTN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVD 161
           GKTTT  +L    +        IG+ N                 I +   LA+M    V 
Sbjct: 118 GKTTTSFILESIFAQAGHCVGVIGTVNFRYRGKLFNNPVTTPESIDLQRILAQMKAAQVS 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    +   R      R    V T +   HL     +    + K   F  +  +G
Sbjct: 178 HVVMEVSSHSIDLHR--VRNCRFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRILPSG 235

Query: 222 ------TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +N DD   + L+  +       + + G+   AD       +    +   ++
Sbjct: 236 PKALTAMAVINLDDEKGQALRDAAAT----KVVTTGRDSRADVCALDLAETITGTTGILK 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + G         +G    +N+L   G    +  D    ++ +       GR +R     +
Sbjct: 292 IDGAPYPFSSALVGAFNVENILSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLERVE--PD 349

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G    +D  Y   P ++ + +  L   +P    R I V+G   +     +     +A  
Sbjct: 350 NGRHVFVD--YAHTPDALMSILETLKAQAPK---RIITVVGCGGDRDRSKRPIMGQIAAT 404

Query: 396 LSLYNI 401
           LS   I
Sbjct: 405 LSDVAI 410


>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
 gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
          Length = 507

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 173/488 (35%), Gaps = 52/488 (10%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               D+L         G      V G++ DSR + P + F AI G   DG  FI  AV +
Sbjct: 1   MKLTDVLAGCGAEQTSGGRSAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  VV        + S  +P F V     AL  +A     R   + T++ ITG+ GKTT
Sbjct: 61  GAVAVVSEK----PVPSSQVPFFKVSSARKALALIAANFYGRPADQLTLLGITGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIF 165
           T  +L    ++   +   IG+                  PL L R+  +     V+  I 
Sbjct: 117 TSYLLEAMSTAAYASTGVIGTLGYKFAGRTVECANTTPDPLELHRILREMVEAGVETVIM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIF 224
           E+    L +     H +    A  + ++  HL     +E+   +K ++F E L  TG   
Sbjct: 177 EVSSHALAQ--ERVHGLTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD++   +  +      +  + F +  + +          +     ++     + + 
Sbjct: 235 VNGDDTYASRIYNEQRGQK-RMAWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  +N+L+ +GI            + +    P  GR +R       G   ++ +
Sbjct: 294 SKLLGPHNLENILLAVGIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSGAPAVLVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y     ++K +I     ++   +GR IAV G   +  +  +     +A   +   +   
Sbjct: 354 -YAHTDDALKRSIEAARSLA---KGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAVVTS 409

Query: 402 --------SHVW---LSGFH---VLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGD 445
                     +     +G     +  +     +S    Y    D         S     D
Sbjct: 410 DNPRTEDPEEIISQVTAGIEKSGLRRISAGKAKSGEKGYLVDADRRAAIEQAISLASADD 469

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 470 VVLIAGKG 477


>gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha275]
          Length = 492

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L  T    P  VD              +  + +S  G  +   + V    A+ T +
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNL 205

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYS 249
              HL     +E   + K+ +F   GL+      +N DD +   L  +         +YS
Sbjct: 206 TRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDGYGAELVGRLKKDCPDLAVYS 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G S++AD ++  +   S+      Q      +     +G   AQN+   + ++      
Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G  
Sbjct: 323 LDNVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQGAA 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L    ++     V ++  +         + D LP    
Sbjct: 379 -LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPA 433

Query: 424 VHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               E        +        D++++  K 
Sbjct: 434 PECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
 gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
          Length = 493

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 178/476 (37%), Gaps = 42/476 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T  +L     G +     +  ++GIS+DSR++ P   F A+ G    G  F+  A
Sbjct: 1   MSGEKTLSEL-----GLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAA 55

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA  V+ + +             + +    D   AL            AT+IA+TG+
Sbjct: 56  LSQGAAAVLTDAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYN----------NHIGVPLTLARMPVDVDFGIFE 166
            GKT+    +      +      +G+            +    P+TL +   +      E
Sbjct: 116 NGKTSVATFVRRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVE 175

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGT 222
              +  S  G  +     V+   A  T  +  HL   +  EE  +AKA +F   L + GT
Sbjct: 176 HAAMEASSHGLDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGT 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    + A + A G +T  + G S+ AD +L   +  +    + +   G   +
Sbjct: 236 AVVNIDDARGIDMLAIAKARGQET-LTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQ 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + IG    QN L+  G+V    A+ +   +AL       G   R + A  +     +
Sbjct: 295 LRLNLIGGFQGQNALLAAGLVIACGAEAEDVFRALPKLDTVRG---RMQLAATRDSGAAV 351

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEV 395
              +   P ++  AI  L    PH  GR +A++G   +           + + H D+  V
Sbjct: 352 YVDFAHTPDAVSTAIKALR---PHVMGRLVAIIGAGGDRDAGKRPLMGAAAAEHADVVIV 408

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 S    +    L +    P +I V          L     L  GD ++V  
Sbjct: 409 TDDNPRSEDPAA--IRLQVLGGAPEAIEVG---DRAEAILRGVDMLQPGDALLVCG 459


>gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
 gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
          Length = 496

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 170/464 (36%), Gaps = 44/464 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71
           G +        V  +++DSR +     F A+ G    G +FI +A++ GAG V+ +    
Sbjct: 15  GLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGAGAVLTDAAGA 74

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +G     +   +D   AL   +         T++A+TG+ GKT+          
Sbjct: 75  KIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTSVATFTRQIWQ 134

Query: 132 SIKKTYACIGSYN----------NHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIR 176
            +      +G+            +    P+TL RM        V     E     L + R
Sbjct: 135 ELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAMEASSHGLSQRR 194

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V+   A  T     HL   +  E+  +AKA +F   L + G   +N DD     +
Sbjct: 195 L--DGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINIDDPRGVDM 252

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A + A G + + + G+ + AD  L   +  +    + +  +G+  +     IG   A N
Sbjct: 253 VAIARARG-QEVLTVGR-EAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIGGFQADN 310

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+  G+V     D D     L +     G   R + A  +     +   Y   P ++  
Sbjct: 311 VLLAAGLVIACGGDPDDVFDVLPMLGTVRG---RMQLAAMRDNGAAVFVDYAHTPDAVAT 367

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411
           AI  L    PH  GR +A++G     G+  +   + + +  + +  S +           
Sbjct: 368 AIKALR---PHVMGRLVAIVGA---GGDRDKGKRLLMGQAAAEFADSVIVTDDNPRSEDP 421

Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +++    +  P ++ V          L    +L  GD +++  
Sbjct: 422 ASIRAMVMEGAPEALEVG---DRAEAILRGVDALGPGDALLICG 462


>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
 gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
          Length = 487

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 85/478 (17%), Positives = 168/478 (35%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +   ++       V  +  DSR +   + F AIKG   DGH +I  A++ 
Sbjct: 1   MKTLKDILYKVHIEAVTGDTTIAVRELVFDSRKVQLNDVFIAIKGYEVDGHSYIEKAIKA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  V+        I    I    VD+   AL                +I +TG+ GKTT
Sbjct: 61  GAIAVICEEIPKNIING--ITYVQVDNGSSALAVMASNYYGNPSENLKLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIK---------------KTYACIGSYNNHIGVPLTLARMPVD-VDFGIF 165
              +L                       K Y    +  + + +   L +M  + V++   
Sbjct: 119 IATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQKMNHEGVEYCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +     + T ++  HL       E    K + F+ L K     +
Sbjct: 179 EVSSHGIHQKR--TAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKEAFCLV 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A      Y++     AD++ +  +         + L+    EV  
Sbjct: 237 NIDDKNGLVMMQNTKAKK----YTYALKTYADYRAQILENRLAG----LLLKINDNEVWT 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L       +L  +    ++ +S      G   R+   +++   T I + 
Sbjct: 289 KLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSG---RFEYFISKNKITTIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  +  ++ I    E + I V+G     G+   +    +  + S  +   ++
Sbjct: 345 YAHTPDALKNVLETINNIRTGNE-QLITVVGC---GGDRDTTKRPKMGNIASTLSTKAIF 400

Query: 406 LSG----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            S        + + +A+ + +     +                    + D++++  K 
Sbjct: 401 TSDNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILIAGKG 458


>gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 487

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 166/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    +    +    +
Sbjct: 15  DLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAVAYEVEGATVLPITEV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +                 N I +  TL  +       +  E+    L + R     +   
Sbjct: 135 TLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQGRVTA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A AKA++F          +N DD F   L A+       
Sbjct: 193 VAVMTNLSRDHLDYHGTMEAYAEAKAKLFAW-NDLKCRVVNLDDDFGRQLAAEKRES--- 248

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++     +A   +R+ +         +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAVGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R       G   L+   Y   P +++  ++ L    
Sbjct: 309 GLDYALDEILKVLPKLEGPAGRMQRL----GGGTQPLVVVDYAHTPDALEKVLTALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +G+ + + G   +     +    ++ E L+      V ++  +            ++
Sbjct: 362 PHVKGQLLCLFGCGGDRDRGKRPLMAEVVERLA----DRVLVTDDNPRTEDPAVIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +V +          + +     DV+V+  K 
Sbjct: 418 AGFTAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKG 455


>gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 492

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 161/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +  + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELAGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      +      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 494

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 175/478 (36%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKIIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+VVVN ++       ++    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CGIVVVNRELEL---KGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    +           P T+A     +  VD +     + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F + L + +       ++++G +  A F  +  K+  +    E      S  V 
Sbjct: 238 LNNDDDFSDYLASVTPY----EVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V     +++  I A++   P EG   R           LI +
Sbjct: 294 SPYVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            L      + ++ + +  +G+   I      GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHNNYIEFDDRAEGIRHAI-DIAEPGDTVVLASKG 458


>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
 gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
          Length = 477

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 168/478 (35%), Gaps = 56/478 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L + HDL         GI P    + ++ DSR +     F A  G   DG  +I  A
Sbjct: 1   MTILASLHDL---------GIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQA 47

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVG 118
           +  GAG V+   +  +    L      V D+     ++         S   ++ +TG+ G
Sbjct: 48  IANGAGAVLWEAEGFSWPADLQAVNLPVKDLRKQAGEIADEFYGHPSSALWMVGVTGTNG 107

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFG---- 163
           KT+  + LT  L+S+++  A IG+  N               P+ L  +  +        
Sbjct: 108 KTSCTQWLTHCLNSLQRKTAVIGTLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVA 167

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L + R   + V   IAV T +   HL     ++  A+AK  + E       
Sbjct: 168 TAMEVSSHGLDQGR--VNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLMEW-PGLKL 224

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN +D++         + G + + S+G  ++ D              + V      + 
Sbjct: 225 AVLNAEDAYGLTFLQALRSEG-RPVLSYGM-QSGDVHCTSLHLHETGMQLSVTTPWGDVT 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G   A N+L  L  +  +   ++ A +A++   P  GR ++Y          ++
Sbjct: 283 LHAAVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGRMEQY----GGNAMPVV 338

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+  L +      G+   V G     G+        +  + S     
Sbjct: 339 VIDYAHTPDALENALQALRE---QTRGKLWCVFGC---GGDRDAGKRPMMGAIASRL-AD 391

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV ++  +  +      + D        H                   GD+V+V  K 
Sbjct: 392 HVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRRAAIAHAIEQAAPGDIVLVAGKG 449


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 174/468 (37%), Gaps = 50/468 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QE--AFFAIKGPHYDGHDF 56
           MN  +    +     G   G      V  +  DSRS++        F A++G ++D HDF
Sbjct: 1   MN--YRLSRIAAICGGKFSGC--DSEVRSVVTDSRSLSCELGCRPMFVAMRGANHDSHDF 56

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I     +G    +V   + AS  +       VD+ + AL +LA   R + + T++ ITGS
Sbjct: 57  IADMQSRGVRAFLVERGVEASSCTGECGFVQVDNAIEALQRLAAYHRAQFRGTVVGITGS 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT  KE +   L    K Y    SYN+ +GVPL++  +  D +  IFE G+S  GE+ 
Sbjct: 117 NGKTVIKEWIAEELPEGMKYYRSPKSYNSQLGVPLSVLMLEGDEELAIFEAGISKPGEME 176

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  ++RP   + T+I  AH  NF  +E+    K  +      +  I+ +Y +    ++ 
Sbjct: 177 RLERIIRPDAVIFTSIGDAHQENFINLEQKCDEKMILAR--SASKIIYHSYYEPLGRMVA 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A           S+ +   +                                        
Sbjct: 235 AHFADRRPVDAASYPEVPES------------------------------------VIGN 258

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
             +     I+ A  D        F        R           LI+++YN +  S+  A
Sbjct: 259 AASRRNAQIVEAFCDAMRYPAPSFAGAPSVAMRLEVKEGINDSILINDAYNLDLNSLALA 318

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L  ++     RR  VL D+ + G      +  +A +++   I  +   G  +     
Sbjct: 319 LDYLHSVALS--RRRTLVLSDISQSGLSDDELYGRVAGMVARAGIDFLIGIGPRLKRYAA 376

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               +    +    D     I    V G  +++K +    F +L++LL
Sbjct: 377 LF--ACDKEFFTATDECVARINRDAVAGRAILLKGARDFRFEKLVHLL 422


>gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
          Length = 489

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 165/479 (34%), Gaps = 50/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + L  I            V G+  DSR +   + F A+KG   DG+ FI  A+  G
Sbjct: 1   MLIDEALAGID-VLERGSGSADVTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +V ++    + G   +P + V +   AL      V         I A+TG+ GKTTT
Sbjct: 60  ARAIVTDSREAWAAGGA-VPFYLVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             +L   L S+ +    IG+   HIG  + ++                         + E
Sbjct: 119 AFLLEQMLKSVNRKCLLIGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIF 224
           +    L +       V   +A+ T +   HL     +E    AKA +FEG+         
Sbjct: 179 MSSHALAQ--ERVWGVPVDVAMFTNLTQDHLDYHGTMERYFQAKARLFEGVGAEAPRVAV 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N D      L  +        + S+G +   +F+  K    + ++    +    ++++ 
Sbjct: 237 VNEDSPAGVWLLTRDLGP---EVMSYGINAG-EFRASKVALSAGRTQFLWETPYGAVQID 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+L            ++   KA    H   G   R++   N    T++ +
Sbjct: 293 SPLTGKVNVYNLLAASCAAMGRGLTLEEIAKAAQGLHQVPG---RFQTVPNDLGITVVVD 349

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y     +++  I +  ++   G+GR I + G     G+  ++    +           V
Sbjct: 350 -YAHTDDALRNLIGLAREL--VGKGRVITLFGC---GGDRDKTKRPKMGRAAGE-GSDLV 402

Query: 405 WLSGFHVL----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+  +            AL      S+                 ++  GD+V++  K 
Sbjct: 403 VLTNDNPRTEEPGAILDEALAGVRETSVECVVEPDRATAIALAIKAVKGGDIVLLAGKG 461


>gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 491

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 161/482 (33%), Gaps = 50/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-VN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    V  G++ID+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLIAGQDHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+            + V  V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDEQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK-TYACIGSYNNHIGVPL-----------------TLARMPVDVD 161
           T+   M    L   ++     IG+  + IG  +                  L     D  
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G   L  + +G +          + V T +   HL +   +E    AK  +F+GL +  
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR- 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++     L    + ++    +AD++       +  S   +   G+  
Sbjct: 240 -AVVNADDPVGAGIRK----LMPGAVTTYALDGDADYRASDLAVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R +     G  ++
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQIP---GGTSV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +P S+   ++ +   +    GR I V G     G+   +   D+  +   ++ 
Sbjct: 352 IVD-YAHSPDSLNKVLTTIRGFA---RGRVITVFGC---GGDRDTTKRADMGAIAGTHSD 404

Query: 402 SHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V  S         G      K  +                          DVV++  K
Sbjct: 405 LCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIAGK 464

Query: 451 SS 452
            S
Sbjct: 465 GS 466


>gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 686

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 177/414 (42%), Gaps = 9/414 (2%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G+D I    +    + ++ T+         IP   V D + A   LA+  R + K  +IA
Sbjct: 64  GNDLID---KSNPNVGLIITETYVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVIA 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS+GK++T+ +    L          G+ N    +   + ++  +  F + E  ++ +
Sbjct: 121 ITGSMGKSSTRMLTASLL-KDYPIQENRGNNNIRAAIYANMLKLIKNPYFAVIETSLNAI 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                 +  ++P IAVIT I  AH S F+ I+EIA  KA IF GL + G   +N D  F 
Sbjct: 180 NHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIINGDTMFA 239

Query: 233 ELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           + L  ++H        YS G S ++  +  +         +E+++ G+      +     
Sbjct: 240 DYLIDQAHQYTQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFSDG 299

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M  N L  + I+  L   V    + L  F P     K           TLID+++NA+  
Sbjct: 300 MISNTLAAILILKNLNIPVK--AEYLYNFEPFSKILKMKEIQTPTHKTTLIDDTHNASLP 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +M  AI      +   +G +I  LG + ++G  S+  H +L   LS  N  ++      +
Sbjct: 358 AMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYILCLDDDL 417

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYRLINLL 464
             + + + ++ H+ Y    + +   ++    +  VV++K SS    F  +   L
Sbjct: 418 RPVVNKI-KNKHITYYPNKELMINDLKYLCNEDSVVLLKSSSGGTQFPEVAKTL 470


>gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
 gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
          Length = 496

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 160/463 (34%), Gaps = 49/463 (10%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           + G  I       V   + +S+   P + F A+ G H DGHDF+  A+  GA  ++    
Sbjct: 2   LPGAKILGAEDIVVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERA 61

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           +  +      PV  V++   A  ++    A     +  +I +TG+ GKTT   ++   + 
Sbjct: 62  LPTTR-----PVCIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIME 116

Query: 132 SIKKTYA---CIGSYNNHIGVPLT------------LARMPVD-VDFGIFELGMSHLGEI 175
           +   T      +G  N +   P              L+RM  +     + E     L   
Sbjct: 117 TAGATVGMSSSLGYDNGYDRQPWDCTTPNAAVLADLLSRMEYNGCTHAVVEASSEALSRD 176

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R     +      IT +   HL     +     AK +I   L +TG   +N DDS    L
Sbjct: 177 RL--DGIELDAVAITNLRQDHLDVHGSVTNYHRAKKKILGRLRETGFAVVNADDSACNKL 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            ++          S      A+      ++   +    +    +++ V    IG H   N
Sbjct: 235 LSQIETPA----LSVALHGAAEITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+   +  +   D+ T ++ L       GR +R  C   Q F   +D ++  +  +M  
Sbjct: 291 CLVAAAVGLVYGVDLKTVVRGLERVDSIPGRMQRIEC--GQPFGVFVDLAHTHDALAM-- 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----- 410
               L  +     GR I V G    +G+ S+     L   ++        ++  +     
Sbjct: 347 ---ALKALRRVTHGRVICVYGADG-LGDPSK---RPLLGRVAERGADLSLITSANPGDES 399

Query: 411 ----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  + D   R    H          +  S    GD V++
Sbjct: 400 PLEVIHDILDGYERPARAHVMPNRAAAIEWALSEAQTGDTVLI 442


>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
 gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
          Length = 477

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 167/478 (34%), Gaps = 56/478 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L + HDL         GI P    + ++ DSR +     F A  G   DG  +I  A
Sbjct: 1   MTILASLHDL---------GIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQA 47

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVG 118
           +  GAG V+   +  +    L      V D+     ++             ++ +TG+ G
Sbjct: 48  IANGAGAVLWEAEGFSWPTDLQAVNLPVKDLRKQAGEIADEFYGHPSRALWMVGVTGTNG 107

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFG---- 163
           KT+  + LT  L+S+++  A IG+  N               P+ L  +  +        
Sbjct: 108 KTSCTQWLTHCLNSLQRKTAVIGTLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVA 167

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L + R   + V   +AV T +   HL     ++  A+AK  + E       
Sbjct: 168 TAMEVSSHGLDQGR--VNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLMEW-PGLKL 224

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN +D++         + G + + S+G  ++ D              M V      + 
Sbjct: 225 AVLNAEDAYGLTFLQALRSEG-RPVLSYGM-QSGDVHSTSLHLHETGMQMSVTTPWGDVT 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G   A N+L  L  +  +   ++ A +A++   P  GR ++Y          ++
Sbjct: 283 LQASVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGRMEQY----GGNAMPVV 338

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+  L +      G+   V G     G+        +  + S     
Sbjct: 339 VIDYAHTPDALENALQALRE---QTRGKLWCVFGC---GGDRDAGKRPMMGAIASRL-AD 391

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV ++  +  +      + D        H                   GD+V+V  K 
Sbjct: 392 HVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRRAAIAHAIEQAAPGDIVLVAGKG 449


>gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 508

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 182/486 (37%), Gaps = 57/486 (11%)

Query: 7   FHDLLQAI-QGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            + L++A+ + H +G       V GIS D+R + P   F A+ G H DG  FI +A++KG
Sbjct: 7   LNKLVKALPKAHIVGNYSDDTVVTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VVV          L +PV  VD+   A ++LA         K  +I +TG+ GKTTT
Sbjct: 67  AKAVVVEGSYQ---PDLQVPVIIVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------------MPVDVDFGI 164
             M++  L S   +   I + +  I                          +   V++ +
Sbjct: 124 TYMISSMLESADASTGFITTVDYKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAV 183

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTG 221
            E   SH  ++  L  +    +AV T +   HL     +E+    KA +F+ L      G
Sbjct: 184 IE-SSSHGLKLHRLEDVA-YDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKG 241

Query: 222 T---IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 +N DD   +L    +       ++++  + +NAD      ++  E     V  +
Sbjct: 242 CGKWGVINLDDPNAQLYIDSTKG----KVFTYSQQDENADLIGNIIRRSEEGVTFRVHYK 297

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G S E+     G +   N L  +G+       +D    AL  F    GR +    ++ Q 
Sbjct: 298 GNSTEINLPISGDYNVYNALAAIGVAITQNIPIDVCKSALERFTGVPGRMQV--ISMGQP 355

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  +ID  Y     S++  +  L Q      GR  AV G   E     ++    +A   +
Sbjct: 356 FTVVID--YAHTEDSLEKVLITLKQ---RTRGRLFAVFGSAGERDPYKRAPMGKVAAKYA 410

Query: 398 LYNI--SHVWLSGFHVLALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVV 447
            + I  +        +  L D    +  V   E                  S    GD V
Sbjct: 411 DFMILTNEDPRGEDEMQILLDIAEGARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTV 470

Query: 448 VV--KS 451
           ++  K 
Sbjct: 471 LLAGKG 476


>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 489

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 181/481 (37%), Gaps = 55/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ +            ++GI+ DSR + P + F  I G   DGH F   A++ G
Sbjct: 1   MKLVELIKNLTIELQDGPLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  V+    +     +    +    D   AL  LA     R      ++A+TG+ GKTTT
Sbjct: 61  AVAVLAERQLDTGGKAT---LLTTPDTRSALALLAANYYGRPSKSIRVVAVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNN-----------------HIGVPLTLARMPVDVDFGIF 165
            +++   L    K  A +G+                     I   + L R     D+ + 
Sbjct: 118 TDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALCR-EEKADYIVM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TI 223
           E+  SH  +++ +  +   ++AV T +   HL     ++   +AK ++F+ +++      
Sbjct: 177 EVS-SHALQLQRVAEI-DFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYA 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD + E +   +         S+G  K +D+Q  + K   + S   +     S+ +
Sbjct: 235 IINIDDPWAEEIFQAATI----PCRSYGIKKRSDYQAGELKIDLDGSSFRLHYGDNSLMI 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG     N L  +        D      AL+      GR +  +    Q F  ++D
Sbjct: 291 NMKLIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFE--KVDCGQDFAVIVD 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  ++  +    ++   G+ R I V G     G+  +S    + E+ + Y+   
Sbjct: 349 --YAHTPDGLENILQTSREL---GKKRLICVFGC---GGDRDRSKRPLMGEIAAKYSDFC 400

Query: 404 VWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           V  S              ++   D + +S +    +  + +   I      GD+VV+  K
Sbjct: 401 VVTSDNPRSEDPHAIIAEIIPGMDKVEKSRYAIIVDRREAIRHAI-HLARTGDLVVIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis FAM18]
 gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           FAM18]
          Length = 492

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A  G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +        +TG+ GKT+  + L  A   + +  A +G+  N 
Sbjct: 86  KDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINVDDGYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      +      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCAND 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A++ L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALATLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 494

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 160/459 (34%), Gaps = 40/459 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   +  I +DSR + P   F AI+G   DG  FI  AV +GA  V+   D      +
Sbjct: 16  TAPALALTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEEDGEFVAPA 75

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           L +P  G+ D+   L++LA     +   K  ++ ITG+ GK+TT  ++    + +     
Sbjct: 76  LGVPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCTLLGGKAG 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRP 184
            +G+  N +   L  A         +                + +S  G ++     +  
Sbjct: 136 VMGTIGNGLFGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALPF 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV T ++  HL     +E   +AK E+ + L       LN DD       A   A   
Sbjct: 196 AAAVFTNLSRDHLDYHGTMEAYGAAKEELLK-LVAEPCAVLNADDRLGRQWLAAYPAAVA 254

Query: 245 KTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +++             +      +    ++     +  +    +G     N+L  +G +
Sbjct: 255 FSVHGPVAGHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLAAMGAM 314

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D D  + +     P  GR + +      G   L    Y   P +++ A+  L   
Sbjct: 315 LVLGYDFDELLASAPQLQPVTGRMECF----GGGKAPLAVVDYAHTPDALEKALQALR-- 368

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H EGR   ++G   +     +     +AE+    +   V L+  +         +  +
Sbjct: 369 -VHCEGRLWCLVGCGGDRDRGKRPMMAAMAEL----HADRVILTDDNPRTEEPARIMADM 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L     V              S     D+++V  K 
Sbjct: 424 VAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKG 462


>gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
 gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
          Length = 500

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 180/485 (37%), Gaps = 49/485 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL    + L  +     GI  +  +  I+ DSR  +    F A++G   DGH+FI  A
Sbjct: 1   MVPLKRLLERLD-VSAVVGGIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
           V  G+  VV   + +    +  +    V D   A+ ++A A       + +II +TG+ G
Sbjct: 60  VSLGSKAVVC--EELPETPAERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGS-----------YNNHIGVPLTLARM-----PVDVDF 162
           KTTT  ++   ++        IG+                     L R+           
Sbjct: 118 KTTTARLMAGMMNDCGIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSIMAERGCRA 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L   R  T  +    AV T +   HL     +E  ASAK  +F  +   G 
Sbjct: 178 VVMEVSSHALVLQR--TFGIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSPEGF 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQ 277
           + +N DD     + A++         + G S  A      F     +   + + + +   
Sbjct: 236 VVVNADDPRAGFM-AENRGKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDAD 294

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G+  +V+    G     N+L        L  + +  +++LS   P EGR +  R A    
Sbjct: 295 GRGYDVLFRLTGLFNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGDF 354

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  +    Y   P +++  I  L+++ P  EG  I V G     G         +   ++
Sbjct: 355 FAVV---DYAHTPDALEKVIGTLNELKPE-EGELIVVFGC----GGNRDHEKRSVMGRIA 406

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 + ++  +            + + +    ++ + +  + +   + + L +GD+++
Sbjct: 407 SRGADRLIITSDNPRDENPESILDDIAEGIVSPGYMRFCDRAEAIHCGV-NLLKEGDILL 465

Query: 449 V--KS 451
           V  K 
Sbjct: 466 VAGKG 470


>gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 489

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 173/478 (36%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL  +  H++       +  I  DSR     +AF AI+G   DGH FI  AV+ 
Sbjct: 1   MKQLKDLLFGVSLHAVSGSTAVGIESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           G   V+   + +    +  +    V D   AL            +   ++ +TG+ GKTT
Sbjct: 61  GVRAVIC--EELPQDLADGVTYVEVADTQLALAVMASNYYGNPSANLRLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
              +L             I +    +       R+                   V+F   
Sbjct: 119 VSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEAGVEFCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + +    T  +     + T ++  HL       +    K ++F+GL K+     
Sbjct: 179 EVSSHGIAQ--RRTEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDGLPKSAFALT 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     +   + A       ++     ADF+ +  +Q  +   +++Q      EV  
Sbjct: 237 NADDKNGLFMIQNTRARK----LTYALRSYADFRAQILEQQLDGQLLKIQ----DNEVWT 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L      S+L       ++ LS     +G   R++  +++   T I + 
Sbjct: 289 KLIGQFNAYNLLAIYATASLLGLGQLEILQLLSGLQTVDG---RFQYFVSKQRITAIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  +  ++ +    E   I V+G     GE  +S    +  + S  + + ++
Sbjct: 345 YAHTPDALKNVLVTINALRTGNES-VITVVGC---GGERDKSKRPVMGHIASDMSETAIF 400

Query: 406 LSG-------FHVLALKDAL--PRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S          ++A  +A   P+++  V   E  +            GD++++  K 
Sbjct: 401 TSDNPRREPPRDIIAEMEAGVEPQNVRKVLVIEDREQAIRTACKMAGGGDIILIAGKG 458


>gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 492

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 176/482 (36%), Gaps = 54/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + I+        +  + G++ +S+S++P   F A KG  +DG+ +I  A+Q G
Sbjct: 1   MKLKELFRNIESCQFKGSQEVLLTGLTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++ +         + I     +++   L +         +  ++ ITG+ GKTT   
Sbjct: 61  ACAILTDLFDPCLKKVVQIIHPNPNEIESILAR-DYYQNSSEELFMVGITGTNGKTTISF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVD---------------VDFGIFELG 168
           ++   L         IG+    +G     A R   D                   + E+ 
Sbjct: 120 IIKYLLDLFHGPCGLIGTIEYIVGSHRYQATRTTPDVIENHKMLYEMSLSGTKSAVMEVT 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTG 221
              L  I+     +   +AV + +   HL     +E   +AK  +FEGL           
Sbjct: 180 SHAL--IQKRVEYIDFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRNEK 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD + E +     A       ++G  K AD Q    K  S+ + + +  QG+++
Sbjct: 238 WAIVNIDDPWCEQIVKGCQAHR----LTYGIDKPADLQASHIKLSSQGTSINLTYQGQTI 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E     +G     N L  +G++      +   ++ ++     +G   R    LN     +
Sbjct: 294 ECFWPLLGRFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKG---RLEKVLNNLELDI 350

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             + +     ++   +  LS+I    +GR + + G     G+   S    +A     Y+ 
Sbjct: 351 YID-FAHTDDALSNVLKTLSEIK---KGRLLTIFGC---GGDRDPSKRPKMAIASEQYSD 403

Query: 402 SHVWLSG----FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             +  S      + +++   +      P S  V   +    +   I      GD++++  
Sbjct: 404 LSIVTSDNPRSENPISICQEIVTGFVNPNSFIVE-IDRRAAIQKAI-EIASPGDMILIAG 461

Query: 450 KS 451
           K 
Sbjct: 462 KG 463


>gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 494

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 165/480 (34%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   I    +       VN I+ DSR       F A KG   D H F    V++G
Sbjct: 1   MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
             +VVVN  +        +    V D L   + L   +      + T I +TG+ GKT+ 
Sbjct: 61  CQIVVVNRALEL---QGDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI----FE 166
             M+      + K  A +G+    I   +T              ++   V+ G      E
Sbjct: 118 ATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    + L +   
Sbjct: 178 VSSHGLSLGRL--SGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N DD F   LK+ +         ++G  + A F      +  +    +      +  
Sbjct: 236 VIINADDPFSTYLKSVTPYES----LTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYP 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N++  +  V +  A ++T  K ++   P EG   R           LI
Sbjct: 292 VRSPYIGRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPVEG---RLEVLDPSLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y      M   I     + P  + + I ++G M   GE   +   ++  V S     
Sbjct: 349 ID-YAHTADGMAKLIDA---VEPFVKQKLIFLVG-MA--GERDLTKTPEMGRVASR--AD 399

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V  +  +            L        +V +++  +G+   I      GD VV+  K 
Sbjct: 400 YVIFTPDNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAI-EVAEPGDTVVLASKG 458


>gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 494

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 165/480 (34%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   I    +       VN I+ DSR       F A KG   D H F    V++G
Sbjct: 1   MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
             +VVVN  +        +    V D L   + L   +      + T I +TG+ GKT+ 
Sbjct: 61  CQIVVVNRALEL---QGDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI----FE 166
             M+      + K  A +G+    I   +T              ++   V+ G      E
Sbjct: 118 ATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    + L +   
Sbjct: 178 VSSHGLSLGRL--SGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N DD F   LK+ +         ++G  + A F      +  +    +      +  
Sbjct: 236 VIINADDPFSTYLKSVTPYES----LTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYP 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N++  +  V +  A ++T  K ++   P EG   R           LI
Sbjct: 292 VRSPYIGRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPVEG---RLEVLDPSLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y      M   I     + P  + + I ++G M   GE   +   ++  V S     
Sbjct: 349 ID-YAHTADGMAKLIDA---VEPFVKQKLIFLVG-MA--GERDLTKTPEMGRVASR--AD 399

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V  +  +            L        +V +++  +G+   I      GD VV+  K 
Sbjct: 400 YVIFTPDNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAI-EVAEPGDTVVLASKG 458


>gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
 gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
          Length = 510

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 152/363 (41%), Gaps = 20/363 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
            +     +  S   ++ ITGS GKT+ K +    L    +T     S+N  +G+   +  
Sbjct: 148 QEKIKTLKKESGLKVLGITGSFGKTSVKFISDTILKEKYRTKNTPSSFNTPMGLSKVINN 207

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  + +  I ELG    GEI  +  LV P I +IT + P H+  F  IE I + K E+ 
Sbjct: 208 ELDKNHEVFIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNTKYELI 267

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWM 272
           E L + G    NYD+ + + L  K+     K  Y +G    +  D   +  +   + S  
Sbjct: 268 EDLPEDGIAIFNYDNDYVKPLADKTK----KKTYRYGIKDIEKLDVYAKDIRVNEKGSTF 323

Query: 273 EVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            + ++G   +      +G H   N+L       +L  +++     +      E    R  
Sbjct: 324 TLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVE---HRLN 380

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +   + +ID+++N+NP   +AA+SV+ +     EG++I +   M E+G + +  +  
Sbjct: 381 IVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKIIITPGMVELGAIEEEENYK 437

Query: 392 LAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           +   ++     +V L G  +      AL D       +   ++++     +      GDV
Sbjct: 438 IGIEIAKV-CDYVILVGQKISAPIKRALIDNNFNEDRIFTVKSLNDGTSKLVEIAKAGDV 496

Query: 447 VVV 449
           V+ 
Sbjct: 497 VLF 499


>gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
          Length = 492

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 159/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+     +    V   +     +  +TG+ GKT+  + L  A   + +    IG+  N 
Sbjct: 86  KDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGTIKSRLFYWHGLKH---AIINVDDEYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y +G S++AD ++  +   S+      Q            +G   AQN+   + ++    
Sbjct: 261 YGYGFSEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYSVERAAANDIILIAGKG 464


>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
 gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
          Length = 485

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 171/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++     + +  +  +    V D   A+ K          SK  ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R    QG+  ++D  Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVD--YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAARAS-DRVIITS 401

Query: 409 FHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GD ++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKG 457


>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 504

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/472 (20%), Positives = 168/472 (35%), Gaps = 45/472 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A++   +       +  IS DSR ++    FFA KG   DGH +I  A++K A 
Sbjct: 14  LKNLLYALEPLEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIGEAIEKRAR 73

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
             +V +++     S ++    V D    L K A           +++ +TG+ GKTTT  
Sbjct: 74  A-IVCSEIPRLYVSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSLVGVTGTNGKTTTSF 132

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELG 168
           +    L         IG+                     +   L RM        + E+ 
Sbjct: 133 LTRYLLEKQNWKAGLIGTVCYDTTESCIPSSRTCPEGSDLQYMLYRMVQAGCRAAVVEVS 192

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIF 224
              L + R         + + T     HL     +EE   +K      +    E  G + 
Sbjct: 193 SHALDQGRI--EGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIAYIRGGKEGDGGVV 250

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD  + LL  K          S    K AD +          +   ++  GK  +V 
Sbjct: 251 LNLDDPQWRLLAEKLRKKMRIVTVSSEGRKEADLKAGSISCDRFSTKFVLEWAGKVFKVK 310

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +GY    N L++LG V +L   ++ +I  L  F    GR ++Y      G   +ID 
Sbjct: 311 SSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKYYSK--DGLLVVID- 367

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +  ++   +  L    P    R I V+G     G+  +     +A+V S  N   V
Sbjct: 368 -YAHSEDALSKLLHTLKCFQPK---RLILVVGC---GGDRDRLKRPRMAKVASE-NADIV 419

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + +  +  +         ++  +  S  +H+    +             D+V
Sbjct: 420 FFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIV 471


>gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae MS11]
 gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
          Length = 492

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 162/453 (35%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  AV  GA  V  + D   +      +P  G+
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGI 85

Query: 89  DDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++     +    V   +     +  +TG+ GKT+  + L  A   + +  A IG+  N 
Sbjct: 86  KNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNG 145

Query: 147 IGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               L  T    P  VD                  E+    L + R   + V    A+ T
Sbjct: 146 FWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSR--VNGVPFRSAIFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            +   HL     +E   + K+ +F   GL+      +N DD +   L  +         +
Sbjct: 204 NLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH---AVINTDDGYGAELIGRLKKDCPDLAV 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G S++AD ++  +   S+      Q      +     +G   AQN+   + ++    
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L+   P  G   R  C +N G   ++ + Y   P +++ A+S L +I P G
Sbjct: 321 YPLDKVLDVLAKIRPASG---RMDCIMNSGKPLVVVD-YAHTPDALEKALSTLQEIKPQG 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 377 AA-LWCVFGC----GGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        +        D++++  K 
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKG 464


>gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
 gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
          Length = 494

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 170/477 (35%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             +VVVN ++       ++    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNRELKL---KGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    +           P T+A     +  VD +     + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLTLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F + L + +       ++++G +  A F  +  K+  +    E      S  V 
Sbjct: 238 LNNDDDFSDYLASVTPY----EVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVR 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V     +++  I A++   P EG   R           LI +
Sbjct: 294 SPYVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VKPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKG 458


>gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
 gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
          Length = 498

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 164/456 (35%), Gaps = 42/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
              +  I +DSR I     F A+ G  Y G  F+  A++  A  V+ + D       +  
Sbjct: 25  DPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDEDGFNFAKKIFT 84

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+   +D    L+K          +T+IA+TG+ GKT+           + K    
Sbjct: 85  KIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANFTRQIWECLGKKAVN 144

Query: 140 IGSYNNHIGVPLTLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRP 184
           IG+      V + L+    +               V     E     L + R     V  
Sbjct: 145 IGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSHGLDQKRL--DGVYL 202

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL      +   ++K  +FE  L   G++ +N DD     +   +   G
Sbjct: 203 TAAAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPKGLYIYEVAKLRG 262

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I + GK+ N D  L+     +    +    + +   V    IGY  A N+L    +V
Sbjct: 263 -QDIITVGKN-NCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQAMNILQAAALV 320

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +     LS      G   R + A  +     +   Y   P +++ A+     +
Sbjct: 321 IACGEQPNDVFDTLSELRTVSG---RMQLAAKRSNGASVFVDYAHTPDAVETALKA---M 374

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSI 422
            PH  GR + ++G     G+  +S    + E    Y    V+++  +  +   D++ +SI
Sbjct: 375 RPHVMGRLLIIVGA---GGDRDKSKRELIGEAAQKY-ADVVFVTDDNPRSEDPDSIRKSI 430

Query: 423 HVHYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
            +   + ++        L    +L  GD +++  K 
Sbjct: 431 LLGCPDAIEIGDRARAILTGVDALKPGDALLIAGKG 466


>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
           ligase [Pseudomonas fluorescens SBW25]
          Length = 487

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 169/458 (36%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  YDG   I  A+Q+GA  V    +    +    +
Sbjct: 15  DLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAVAYEVEGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +                 N I V  TLA +       +  E+    L + R     +   
Sbjct: 135 TLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L A+       
Sbjct: 193 VAVMTNLSRDHLDYHGTMEAYAAAKAKLFAW-NDLKCRVVNLDDAFGRQLAAEDSEA--- 248

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + S+  +  +A    R+ +   E     +        +    +G     N+L  +G + 
Sbjct: 249 RLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  ++ L       GR +R       G   L+   Y   P +++  +  L    
Sbjct: 309 GLDYALDEILRVLPKLEGPAGRMQRL----GGGKQPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +G+ + + G   +     +    ++ E L+      V ++  +  +         ++
Sbjct: 362 PHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLA----DGVLVTDDNPRSEDPSQIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +          + +S    DVVV+  K 
Sbjct: 418 AGFNDVSKAAFVAGRGAAIAQLIASASADDVVVLAGKG 455


>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 483

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 168/477 (35%), Gaps = 53/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       V+ +  DSR       F AI+G   DGH FI  A+  G
Sbjct: 1   MELSKLLTGLNYVCVKGNEHQEVDHMIYDSRIKTNAGLFIAIEGFKTDGHQFIEAAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  ++V  D+        + +  V+D   A+             +  ++ +TG+ GKT+ 
Sbjct: 61  AKAILVQKDVEIKED---VTIIKVEDTRLAMALVANNAYGHPSKQFELVGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             +L   L +  K    IG+  N IG  +  A                 +   VD  + E
Sbjct: 118 TFLLGQILEAYHKKIGIIGTIENRIGSQILKAERTTPESLDLQALFKKMVESQVDTTLME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         + + T +   HL     +E  A+AKA++F   E   T  +N
Sbjct: 178 VSSHALALSR--VAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFTMCE---TGIVN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D  +   +   +       + ++   K+AD++       +      +     + +V   
Sbjct: 233 KDSDYINEIIKGATC----NLVTYAIDKDADYKATNVIITAAGVEYTLVCDQGTFKVDVP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +     L   +   +  L +     GR + ++    +G+  L+D  Y
Sbjct: 289 IPGKFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFKSI--KGYSVLVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +S + + +   +G  I V G     G+  ++    + ++ + Y+  HV++
Sbjct: 345 AHTPDGLENVLSTIKEFA---QGHIITVFGC---GGDRDKTKRPIMGKIAATYS-DHVFI 397

Query: 407 SG-----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         L + D +   +          E          S     DVV++  K 
Sbjct: 398 TSDNPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKG 454


>gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 493

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 176/475 (37%), Gaps = 52/475 (10%)

Query: 12  QAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           QA+   S+G+  +G     V GIS+DSR + P   F A+ G    G +FI +A++ GA  
Sbjct: 4   QAVPLSSLGLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVA 63

Query: 68  VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ + +       ++    + +   D    AL++ A         T+IA+TG+ GKT+  
Sbjct: 64  VLTDAEGATLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVS 123

Query: 124 EMLTIA----------LSSIKKTYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELG 168
             +             L +     A      +    P+TL R               E  
Sbjct: 124 TFVRQIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEAS 183

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
              L + R     V    A  T     HL      +    AKA +F   L + GT  +N 
Sbjct: 184 SHGLDQRRL--DGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINI 241

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A + A G + + + G+    D  L   +  +    +    +GK+ +   + 
Sbjct: 242 DDPKGVDMVAIARARGCE-VITVGRD-GGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNL 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L+  G+V    AD       L       G   R + A  +     +   Y 
Sbjct: 300 IGGFQADNVLLAAGLVIACGADPAHVFDTLPHLTTVRG---RMQLAATRDNGGAVFVDYA 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++  A+     + PH  GR +A++G     G+  ++    + +  +  +   V+++
Sbjct: 357 HTPDAIATALQA---MRPHVMGRLVAIVGA---GGDRDRAKRPLMGQ-AAAAHADLVFVT 409

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +           A+ +  P +  V          L    ++  GD +++  K 
Sbjct: 410 DDNPRSEDPATIRAAVMEGAPEATEVG---DRAEAILRGIDAIGTGDALLIAGKG 461


>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 501

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/487 (19%), Positives = 172/487 (35%), Gaps = 55/487 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
              HDLL+AI   ++  +P        + GI  +S +  P   F  + G   DG DF   
Sbjct: 1   MKLHDLLRAIP--NVVEMPNHPALDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFWQS 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIP------VFGVDD--VLGALNKLAVAARLRSKATII 111
           A+  GA   +++            P      +    D  V  A    A       +  ++
Sbjct: 59  AIASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQLV 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------R 155
            +TG+ GKTTT  ++   L+  ++  A  G+           A                 
Sbjct: 119 GVTGTNGKTTTTHLIEFILTQAQRPTALFGTLYARWQGFSQTAVHTTPFPVELQQQLHSA 178

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    + G+ E+    L + R L       +AV T +   HL     +E+  +AKA +F 
Sbjct: 179 VAAGCELGVMEVSSHALAQGRVL--GCEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFN 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEV 274
                G   +N DD + + L  K   +G    +S+  ++ +AD                +
Sbjct: 237 SDYLHGKAIINADDPYGKRLIEK---VGRDRTWSYSVQNPSADLYTSNLTYTLIGVKGTL 293

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +      +G +   N+L  +G V  L  D+ T +  L+ F    GR +R +   
Sbjct: 294 HTPVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQLKP 353

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +Q    ++D  Y   P S++   ++L    P  +GR I V G     G+  ++    + +
Sbjct: 354 DQDISVIVD--YAHTPDSLE---NLLKAARPFIQGRMICVFGC---GGDRDRTKRPKMGK 405

Query: 395 VLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + +      V  S           +  + + +P ++                     GD 
Sbjct: 406 IGAELADVAVVTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDG 465

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 466 VLIAGKG 472


>gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis RP62A]
 gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis RP62A]
 gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU028]
 gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 494

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 175/478 (36%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+VVVN ++       ++    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CGIVVVNRELEL---KGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    +           P T+A     +  VD +     + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F + L + +       ++++G +  A F  +  K+  +    E      S  V 
Sbjct: 238 LNNDDDFSDYLASVTPY----EVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V     +++  I A++   P EG   R           LI +
Sbjct: 294 SPYVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            L      + ++ + +  +G+   I      GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHNNYIEFDDRAEGIRHAI-DIAEPGDTVVLASKG 458


>gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 498

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 175/478 (36%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                +++ +    + +V  G V+     I  DSR +  +  F  IKG ++D H      
Sbjct: 1   MRLSQVIELLGNSVLQVVNPGNVDPEFDHIESDSRGLKERNLFICIKGTNFDSHLIAREL 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVG 118
            +KGA  +V   +M      + +P+  V       AL  +        K T I +TG+ G
Sbjct: 61  QRKGAVALVA--EMPIEDEEVVVPIVYVKSSRLVEALLTMEEYCHPYRKLTTIGVTGTNG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYN------------NHIGVPLTLARMPV-----DVD 161
           KTT   ++   LSS ++  + IG+              N    P+ LA++         +
Sbjct: 119 KTTITTLIYHVLSSFERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKLLQLSTKLKSE 178

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+    L   R     +R  + +I+ +   HL      ++   +K ++F  L+  G
Sbjct: 179 YFIMEVSSHSLSMNR--VEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKLFSLLKTNG 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKS 280
              +N D      +      +    I ++G    +D+++             +Q   G S
Sbjct: 237 IAVVNGD-----KINIADIHISRNRITTYGFGDESDYRIENLDISRTGMDFTIQTPYGSS 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG H A N+   +  ++ L  D+D   KA+S F    GR +    A   GF  
Sbjct: 292 HRIYSRLIGEHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDV 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  +   P +++  +    +++P   GR I V G      +  +    +++   S   
Sbjct: 352 VVD--FAHTPDALEKLLKTARRLTP---GRLILVFGAGGSADKGKRPLMSEVSSKYS--- 403

Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V L+               L+  + +                  +     D+V++
Sbjct: 404 -DVVILTSDDPKLDDPAEILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLI 460


>gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Staphylococcus epidermidis FRI909]
          Length = 494

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 170/477 (35%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             +VVVN ++       ++    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNRELKL---KGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    +           P T+A     +  VD +     + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F + L + +       ++++G +  A F  +  K+  +    E      S  V 
Sbjct: 238 LNNDDDFSDYLASVTPY----EVFTYGITHEAQFMAKNIKESLQGVEFEFFTPFGSFPVR 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V     +++  I A++   P EG   R           LI +
Sbjct: 294 SPYVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKG 458


>gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
 gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
          Length = 523

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/354 (22%), Positives = 156/354 (44%), Gaps = 20/354 (5%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVD 161
             +     I ITGS GKT+TK ++   +     +     SYN  +G+ +T+   +     
Sbjct: 173 YAQRDLIKIGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTIRNYLKPIHQ 232

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G  H+GEI  L   V+P I V+T++ P HL  F  +E I   K ++ E L K G
Sbjct: 233 VFVCEMGADHVGEITRLMKYVQPQIGVVTSVGPQHLLTFGSLENIIHEKMQMIERLPKDG 292

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N D+ +    + K+       + SFG +S++ D++  K    +  S+  V    + 
Sbjct: 293 LGVINLDNDYIRQYRVKNSV----PLISFGIQSEDVDYRAVKISYTTTGSYFTVVHAKEE 348

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      +G     N+L  + +   L     +  +A++     E R +  +         
Sbjct: 349 VAFHTKLLGELNIMNILSGIVVARHLGISWKSLQRAVANMEQVEHRLELKKI----NGHR 404

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+++NANP   K A+ VLS +     G+R  +   M ++G+    ++ +  + +  + 
Sbjct: 405 FIDDAFNANPIGAKMALEVLSMMP----GKRYIITPGMIDLGKKQDEYNREFGKRMKHF- 459

Query: 401 ISHVWLSGF-HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  V L G     A+++ L      + H+H  +T+     ++     + D +++
Sbjct: 460 VDEVILVGPKQTKAIQEGLAEMNFDADHIHVYQTVQEALAYVYEHADEHDTILL 513


>gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 492

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 170/458 (37%), Gaps = 38/458 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P+  +  I+ DSR   P   FF +KG  +DGH F+  A++ GA  VV + ++V 
Sbjct: 5   QLFKQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEELVH 64

Query: 77  -SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              G L   V  V D L  +  L   A       +  +TG+ GK +  +++   L+   K
Sbjct: 65  YEEGILYFRVNDVVDTLNVIADLF-YAEASYHLQMFGVTGTNGKESIAKIIQEVLNP-DK 122

Query: 136 TYACIGS--------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               IGS                 +I    ++ +  VD       L +S +G  +     
Sbjct: 123 ATGNIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVEQKRVQS 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V    A+ T +   HL     ++    AK + F+ L++      N DD +   +   S A
Sbjct: 183 VHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEKACAITNIDDPYGLKMVEDSEA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + ++G S+ A + +R+++   + +   +++  +  ++  + +      N+   + 
Sbjct: 243 ----RVVTYGMSEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFNLMNLTAAIV 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +      ++   + +      EG  +  +    Q F  L+D         +   +   +
Sbjct: 299 ALHESGVKMELIQERVKFLTQMEGHMQMIQ--EGQNFNVLVDI--AHTVDGLSRVLEYAT 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKD 416
            I+P    R I V G    +G+  +     +  ++  Y    + L+           + +
Sbjct: 355 SITPKNC-RIIVVNGS---VGKRDKIKRQKVGNLMDQY-CDMIILTEEDPRNESPREIAE 409

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKS 451
            + + I       +   +  I+ +L      D V+V  
Sbjct: 410 EIAKGIDKTPYLIISDRYDAIRQALELADPEDTVLVLG 447


>gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
          Length = 487

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 171/476 (35%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D+L  +  +++      +V  I  +SRS+A  + F AIKG   DGHD+I +A+++
Sbjct: 1   MTSLIDILYKVTINAVVGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIENAIKQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  VV   + +       I    V+D   AL            S   ++ +TG+ GKTT
Sbjct: 61  GAIAVVC--EYLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFE---L 167
              +L             + +             +     LT+ R   +++    E   +
Sbjct: 119 IASLLFQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +     + T ++  HL       E    K   F+ L  +     N 
Sbjct: 179 EVSSHGIHQKRTQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKKSFFDNLSSSAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A   K    +G    A+++ +  +       +++       +V    
Sbjct: 239 DDKNGAIMLQNTKAKQYK----YGLKNYANYKAQILENSFSGMLLKIN----DSDVWTRL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L       +L  +    ++ +S      G   R++  +++   T I + Y 
Sbjct: 291 IGGFNASNVLAIYATAELLGLEKTEILRLISELESVSG---RFQYLISEENITAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E   I V+G     G+   +    +  + S  +   ++ S
Sbjct: 347 HTPDALKNVLETINSIRTKNE-ELITVIGC---GGDRDATKRPKMGHIASALSTKAIFTS 402

Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                     + + + + +     +                     GD++++  K 
Sbjct: 403 DNPRTEVPELIIEDIEKGVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKG 458


>gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum WCFS1]
 gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus plantarum WCFS1]
          Length = 550

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 172/461 (37%), Gaps = 53/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A++KGA ++V +  +      +++
Sbjct: 79  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNV 133

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193

Query: 142 SYNNHI-----------GVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187
           +    I              +T  R    +     E   + +S +  +      +   IA
Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSH 240
           V T +   HL     + +   AKA +F  L              LN DD      +  + 
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + +FG   +A    +  +  S  +  ++ + G    V    IG     NML   
Sbjct: 314 A----HVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAF 369

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     D  IK+L      +G   R++   +    ++I + Y+  P  +  A+  +
Sbjct: 370 AAAYASGIPEDQIIKSLEKVTGVKG---RFQSVPSHTGVSVIVD-YSHTPDGLLNALETI 425

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVL-- 412
              +         V+G     G+  ++    +A++   ++   ++ S         ++  
Sbjct: 426 QDFATKD---IYCVVGC---GGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILN 479

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +P +    Y +    +   I+++   GDVV++  K 
Sbjct: 480 DMVAGVPNADVPVYEDRHVAIAKAIEAA-QPGDVVLIAGKG 519


>gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
 gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
          Length = 501

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 171/479 (35%), Gaps = 48/479 (10%)

Query: 12  QAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +A     +    Q  V+G   +  DSR I P + F A +G + DG ++I  A+ +GA  V
Sbjct: 5   KAAPAQPVLPALQHTVSGCQLLHADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFV 64

Query: 69  VVNTDMVA-SIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + D          +P  G+ D+     +        L     II +TG+ GKT+  + 
Sbjct: 65  YWDDDGAFQWQPEWRVPNQGISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQW 124

Query: 126 LTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FELGM 169
           L  A+ ++    + A IG+  N     L            +                + +
Sbjct: 125 LAQAIDNLEQAPSCAIIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEV 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNY 227
           S  G  ++  + V  H AV T +   HL     + E  +AK  +F  +GL+      +N 
Sbjct: 185 SSHGLAQYRVNGVPFHTAVFTNLTRDHLDYHGSMAEYGAAKERLFYWQGLQN---AIINS 241

Query: 228 DDSFFELLKA---------KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           DD+F   L A         K+        Y++G ++ AD  +  +    E   + +    
Sbjct: 242 DDAFGAALAAELKQHSGSLKTEGCNEVKTYTYGFNEQADICITCFAANREGMSISLATPW 301

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G   AQN    LG +     D   A+ ALS   P  GR         Q  
Sbjct: 302 GEGSAQTRLLGRFNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMDCI----IQPD 357

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+   Y   P +++ A++ L +I    E R   V G   +     +    ++A  L+ 
Sbjct: 358 KPLVVVDYAHTPDALEKALTTLREIQ-QPESRLWCVFGCGGDRDRGKRPLMGEVAARLAD 416

Query: 399 YNI---SHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
             +    +        + + D LP   H    E           +     D+V++  K 
Sbjct: 417 KAVVTSDNPRTEDPQAI-IADILPAVPHPALVEADRKAAIEQTIAQAQAQDIVLIAGKG 474


>gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alistipes sp. HGB5]
          Length = 485

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 172/474 (36%), Gaps = 44/474 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +LL+     ++       V G+  DSR++ P + FFA++G   DGHDFI  AV K
Sbjct: 1   MKTLKELLRNTPVTALHGDDSAAVAGLVYDSRAVGPGDCFFAVRGTQNDGHDFIPAAVAK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV       +   +            A    A          ++ ITG+ GKTTT 
Sbjct: 61  GAAAVVCERLPEQTAADVVYVAVPDAAGALADMAAAFYDHPSRALKLVGITGTNGKTTTV 120

Query: 124 EMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVD-----VDFGIFEL 167
            +L   + ++      I +             +    P+ L  M  +      ++   E 
Sbjct: 121 TLLYDLVRALGHKAGLISTVVYKVGERTVGATHTTPDPVRLNAMMREMADEGCEYCFMEC 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +  ++  T  +     + + I   HL       E   AK   F+ L K      N 
Sbjct: 181 SSHAI--VQERTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDSLSKEAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     I+++     ADF+ +  +   +   + +  Q    EV    
Sbjct: 239 DDKNGRVMVQNTAAA----IHTYSLRSMADFRCKIVEMHPDGMLLRIDGQ----EVWVGL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G   +L  D    ++A S+ HP  GR +  R A      T + + Y 
Sbjct: 291 VGRFNAYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVRSA---NGVTAVVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  I  + +I    + + I V G     G+  ++   ++A++   Y  + V+ S
Sbjct: 347 HTPDALENVIRTIEEIRTPAQ-KLIVVCGC---GGDRDRTKRPEMAQIAVRYADTAVFTS 402

Query: 408 G----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D     L                         GD+++V  K 
Sbjct: 403 DNPRHESPEAILDQMAAGLEPGARFLRIADRAEAIRTAVMLSQPGDILLVAGKG 456


>gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
 gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
          Length = 502

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 175/493 (35%), Gaps = 68/493 (13%)

Query: 5   WTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            T  +L+  + G           +  +  ++ DSR + P   F A++G   DGH F    
Sbjct: 1   MTLDELIGPLHGRLGVLERNGDQRVTIADLTDDSRKVGPGSLFVAVQGERVDGHQF---- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           + +          +  S    +IP   V D   AL  L         S   ++ +TG+ G
Sbjct: 57  LDRVVAAGAAAVVVQRSGDVGAIPCVRVQDSRAALGILGSRFYGDPSSSLRMVGVTGTNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVDFG---- 163
           KTTT  ++   L + ++    IG+            ++     L L ++   +       
Sbjct: 117 KTTTTYVVKTMLEAARRQVGLIGTVAYLVGKESIPASHTTPGALELQKLFARMREARLDT 176

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L   R  T      +AV T +   HL     +E    AK ++F  L + G 
Sbjct: 177 VVMEVSSHALALDR--TAGSEFDVAVFTNLTQDHLDFHLDMERYFQAKLKLFAELGRAGA 234

Query: 223 ------IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                   +N DD +   +++         ++++G  + AD      +     +   ++ 
Sbjct: 235 VKPRKRAIINADDPWGARIRSACTV----PVWTYGLHQQADIYADGVRLSPAGTSFTLRS 290

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +    +G H   N+L  +G+V      +D    A+       GR +       Q
Sbjct: 291 PAGTCPIKSRLVGEHNVSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELVEA--GQ 348

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            F  ++D  Y     ++   ++    +     GR I V G     G+  ++    +    
Sbjct: 349 DFSVVVD--YAHTEDALVRLLTAAQALRT---GRIITVFGC---GGDRDRTKRPKMGRAA 400

Query: 397 SLYNISHVWLSGFHVL-------------ALKDALPRSIHVHY---SETMDGLFLFIQSS 440
             Y+   V L+  +                +K+AL    HV Y   ++  + +   I+ +
Sbjct: 401 VKYS-DVVILTSDNPRTEDPAAILREVEVGVKEALAERGHVRYRMVADRREAIEAAIREA 459

Query: 441 LVDGDVVVV--KS 451
              GD+V++  K 
Sbjct: 460 -KPGDMVLIAGKG 471


>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
 gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
          Length = 479

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/478 (18%), Positives = 167/478 (34%), Gaps = 58/478 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I     G      +  +S DSR + P   F  IKG   DGHDF   A+ KG
Sbjct: 1   MKLSELLKDI--EYTGTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFAQAALAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
              ++   D+  +          V D   A  K+          K  ++ +TG+ GKTT 
Sbjct: 59  VPCILCERDLGLNN------QLLVQDTHFAFAKMCANFYGNPAKKLKLVGVTGTNGKTTV 112

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   L+ +      IG+  N IG  +                    +    ++ I E
Sbjct: 113 TSIIKRVLAGLGCKVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKILSDMVEAGCEYVIIE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R         +A  T +   HL     +E+   AKA++F   +K     + 
Sbjct: 173 VSSHALDQCRLADS--HFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLFHMCDKG---VIC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DDS+   L  ++H     ++ +F  +  +A    R  +        E+        +  
Sbjct: 228 IDDSYGRRLALEAHC----SLRTFSAEDASASCFARNIEMDITGVRFEMVTGAVISRMQF 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N L    +   L   +D+ +  ++     +G   R         FT++ + 
Sbjct: 284 GTPGLFSVRNALCAALVCLDLGISLDSVVGGINACGHIKG---RSEIIPTGRDFTVLCD- 339

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  +   +S +++     +GR +AV G     G+  +     + EV++  N   + 
Sbjct: 340 YAHTPDGLVNILSSINEYKG--KGRAVAVFGC---GGDRDRKKRPIMGEVVA-RNADLLI 393

Query: 406 LSG-----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++          A+ D +     P                +       GD++++  K 
Sbjct: 394 VTSDNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGDIILLAGKG 451


>gi|289677696|ref|ZP_06498586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 302

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 136/304 (44%), Gaps = 15/304 (4%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + ELG S +GEI +   L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT
Sbjct: 4   AVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGT 63

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQGKS 280
             LN +D  F + + ++   G + + +F      AD    +  + +       +     +
Sbjct: 64  AVLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGT 120

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V  + +G H   N L        +   ++  +  L+   P +G   R    +      
Sbjct: 121 ARVQLNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNSVQPVKG---RAVAQIASNGTR 177

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++    +   
Sbjct: 178 VIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-K 232

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +S ++  G  +     A     H ++  +   L   + +       +++K S S     +
Sbjct: 233 VSALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHV 290

Query: 461 INLL 464
           +  L
Sbjct: 291 VAAL 294


>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
 gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
          Length = 486

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 178/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ I+   I    Q  +  I IDSR +  Q  F A++G   DGH +I  A+++G
Sbjct: 1   MVIENLIKGIETKKIIGPVQNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++   + +    +  I    V     AL  LA        SK  ++ +TG+ GKTT 
Sbjct: 61  AVAILC--EDLPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFE 166
             +L      +      + +  N+I              +T+ ++  D      D+   E
Sbjct: 119 ATILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  + + ++ L +    + T +   HL     I     AK E F+ L K     +N
Sbjct: 179 VS-SHAIDQKRISGL-KFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNLPKNAFSLVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + +     I+++      DF+ R  +       +E+     + +VV  
Sbjct: 237 LDDKNGMVMVQNTKSA----IHTYSLRSLCDFKARVIESHFNGMILEIN----NTDVVVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+L   G   +L    D  + A+S      GR +  +    +G+  ++D  Y
Sbjct: 289 FTGKFNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETLQAP--KGYTVIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++   ++ +  I   G+G+ I V+G      +  +          S+ N   V +
Sbjct: 345 AHTPDALTNVLTTIHDI-LDGKGKVITVVGAGGNRDKGKRPLMAK----ESIKNSDTVII 399

Query: 407 SGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD L         +V   E                DV+++  K 
Sbjct: 400 TSDNPRFEDPQEIIKDMLDGLNTEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKG 457


>gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer RA-YM]
 gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 486

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 172/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I            V+ I  DSR    +  + AIKG   DGH FI  AV+KG
Sbjct: 1   MLLRELLHNIPVLETIGALDVEVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A ++V+  + +  I   +I    V ++   L +LA         K  ++ +TG+ GKT+ 
Sbjct: 61  AKVIVL--EDLPEILDETITYIKVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             +L     ++    A I +    IG  +  +                      ++   E
Sbjct: 119 STLLFDVFKNLGYPSALISTVEYRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R  T  +   +A  T I   HL       E  + K   F+ L  +     N
Sbjct: 179 VSSHGIHQNR--TEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNLPDSAVAITN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A       ++     +D+  R  +       M +   GK  EV   
Sbjct: 237 LDDKNGLVMLQNTKAKKK----TYALKTLSDYHGRLLEVDFNG--MLLNFNGK--EVWTS 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+L+  GI   L  D    + A+S      G   R+    ++G    + + Y
Sbjct: 289 LTGKFNVYNLLLVFGIARELGFDEVEILTAISQLKRVNG---RFETIKSEGGIFFVVD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  +++I    E R I+V G     G+   S   ++ ++ +  +   +  
Sbjct: 345 AHTPDALENILDSINEIRTKNE-RLISVFGC---GGDRDHSKRPEMGKIATQKSTLAIIT 400

Query: 407 SG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S              + A  +    S +    +  + + + I+      D+++V  K 
Sbjct: 401 SDNPRTEDPNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIK-FAEPKDIILVAGKG 457


>gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
 gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
          Length = 487

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 160/476 (33%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +   ++       V  +  DSR +   + F AIKG   DGH FI  A+  
Sbjct: 1   MKLLKDILFGVGLTAVSGSTNLMVGTLCFDSRKVKLDDVFVAIKGTLTDGHKFIEKAIDS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  +V  T     +    +    VD    AL  +A            ++ ITG+ GKTT
Sbjct: 61  GAVCIVCETMPEQLVNG--VTYVEVDSGNKALAIMASNYYDNPSKNLKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------L 167
              +L             I +    +                I E              +
Sbjct: 119 ISSLLYQLFKKAGFKVGLISTIKIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +    A+ T +   HL       E    K  +F+ L K      N 
Sbjct: 179 EVSSHGIHQKRTEGLVFEGAIFTNLTHDHLDYHKTFAEYRDTKKSLFDKLPKNAFALTNV 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A      +++     AD++ +  +   +   ++V       E+    
Sbjct: 239 DDKNGLVMLQNTAARK----FTYALKSYADYRAQILENQFDGQLLKVDDD----ELWTKL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG+  A N+L       +L  +    ++ LS     +G   R++  +++   T I + Y 
Sbjct: 291 IGHFNAYNVLAIYATADLLGLEKLETLRLLSELDNVDG---RFQYYISKEKITAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  +  +    E   I V+G     G+  +S    +  + S  +   ++ S
Sbjct: 347 HTPDALKNVLETIGTLRTGNE-NVITVVGC---GGDRDKSKRPVMGNIASQMSNKTIFTS 402

Query: 408 G----FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     + + +   +       +   E  +             D+++V  K 
Sbjct: 403 DNPRTESPSVIIEEMEAGVEPQNVKKILSIENREQAIKTACQLATANDIILVAGKG 458


>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276]
 gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276s]
 gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9768]
 gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11222]
 gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11074]
 gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9301]
 gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-EC]
 gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-LC]
          Length = 483

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 168/473 (35%), Gaps = 48/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LLQ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D   L A               +I ITG+ GKTT   
Sbjct: 63  AVLSSLYNPF----LSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELG 168
           ++   +    +    IG+  +                I +    A M   ++   + E+ 
Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +G              V+T I   HL     +EE  +AK + F  L + G   +N D
Sbjct: 179 S--IGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +       S A  +    S+   + AD++  + K  S  S  ++  QG+        I
Sbjct: 237 CEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLI 292

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+L +L +V   L  D    ++ +      +GR          G F +  + Y 
Sbjct: 293 GEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILL----GPFPVYID-YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
             P ++     +L Q+ P  +GR I V G   +   + +     ++E    Y  S V   
Sbjct: 348 HTPDALDNVCRILLQLLPK-DGRLIIVFGCGGDRDRVKRPLMAKVSEH---YGFSFVTSD 403

Query: 407 ------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +        +V  S+    +   I S   D D+V+V  K 
Sbjct: 404 NPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAI-SMASDKDIVLVAGKG 455


>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
 gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
          Length = 484

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 179/478 (37%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV   + +      ++    V+D    + KL         SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVC--ENLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             +L             I +  N+I             P+TL ++          +   E
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     ++    + T +   HL     +E    AK   F+ L KT     N
Sbjct: 179 VSSHSVAQKRI--GGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD    ++   + A     ++++     +DF+ +  +   E   +++     ++EV   
Sbjct: 237 LDDKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEGMLLDIN----NVEVNVQ 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L   G   +L    +  + ALS   P  GR    R    +G+  ++D  Y
Sbjct: 289 FIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++ + ++  +G+G  I V+G     G   +     +A+     +   V +
Sbjct: 345 AHTPDALENVLNAIHEV-LNGKGNVITVVGA---GGNRDKGKRPLMAQEAVKQS-DKVII 399

Query: 407 SGFHVLA------LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         + D L          V                    DV++V  K 
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
 gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
          Length = 493

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 172/472 (36%), Gaps = 46/472 (9%)

Query: 12  QAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           QA+   S+G+  +G     + G+++DSR +     F A+ G    G +FI +A++ GA  
Sbjct: 4   QAVPLSSLGLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAA 63

Query: 68  VVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ +    A    L     + V   D    AL + A        AT+IA+TG+ GKT+  
Sbjct: 64  VLTDATGAAMAADLMASAGVAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVS 123

Query: 124 EMLTIA----------LSSIKKTYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELG 168
             +             L +     A      +    P+TL R   +           E  
Sbjct: 124 TFVRQIWIEMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEAS 183

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
              L + R     V    A  T     HL   +  +    AKA +F   L + GT  +N 
Sbjct: 184 SHGLDQRRL--DGVTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINI 241

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A + A G + + S G+    D  L   +  +    +    +GK+ +   + 
Sbjct: 242 DDPKGIDMAAIARARGCE-VLSVGRD-GGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNL 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L+  G+V    A        +       G   R + A  +     +   Y 
Sbjct: 300 IGGFQADNVLLACGLVIACGAKPADVFDTIPHLTTVRG---RMQLAATRDNGGAVFVDYA 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++  A+     + PH  GR +A++G   +     +          +  +   V+++
Sbjct: 357 HTPDAISTALKA---MRPHVMGRLVAIVGAGGDRDTTKRPLMGQ----AAAAHADLVFVT 409

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV------DGDVVVV--KS 451
             +  +   A  R+  +  +     +    ++ L        GD +++  K 
Sbjct: 410 DDNPRSEDPATIRAAVIAGAPDATEVGDRAEAILRGIDAIGPGDALLIAGKG 461


>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. PCC 7002]
 gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
           PCC 7002]
          Length = 499

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 180/480 (37%), Gaps = 45/480 (9%)

Query: 4   LWTFHDLLQAIQG-HSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +     LL+ +    S+   P  Q  V G++ +S+++ P + F  + G   DG +F   A
Sbjct: 1   MMQLGALLKQVSAIESLADHPMLQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFWQGA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSV 117
           ++ GA   VV+ + +    +     V  V D + A  ++A     +  +   ++ +TG+ 
Sbjct: 61  IEAGAIAAVVSPEALEKFPATKGECVIPVADPVIACAEIANLFYEKPTASLKLVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVD 161
           GKTTT  ++   L + ++  A IG+          +A                 +     
Sbjct: 121 GKTTTSHLIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNT 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L + R      +  +AV T +   HL     +E+   AKA +F      G
Sbjct: 181 HAVMEVSSHALHQNR--VKGCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEYCHG 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N D+ + + L   +H LG K      +   AD  + +    +      ++    ++
Sbjct: 239 RAVVNLDNPYGDRL---AHKLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPMGTV 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E     +G    +N++  +G    L  D++  I  L  F    GR +R   A +Q    +
Sbjct: 296 EFTSPLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVI 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P S++   ++L    P    + I V G     G+  ++    + ++ +  + 
Sbjct: 356 VD--YAHTPDSLE---NLLKASRPFIAKKMICVFGC---GGDRDRTKRPLMGKIAATQSD 407

Query: 402 SHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V  S           +  + + +P +I                     GD V++  K 
Sbjct: 408 WAVVTSDNPRTEDPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGKG 467


>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 488

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 162/478 (33%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+QA++   +         V  ++ D+R + P   F AI G + DGH FI  A+ 
Sbjct: 1   MLASDLIQALKYKRLSQSEFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
           KGA +++    +       ++PV  V D   A+  L             +I +TG+ GKT
Sbjct: 61  KGAQMIIAQEPV-----ETTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIF 165
           T   ++      + +    IG+    +   +               TLA M  D +    
Sbjct: 116 TVTHLIEEVFHDLGEGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEM-RDANVKTV 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGT 222
            + +S +  ++     +   I V T     HL+    + +   AK+ +F  +       T
Sbjct: 175 SMEVSSIALVQGRVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSGKT 234

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD         +       I ++G    AD      K     +  ++ +  +   
Sbjct: 235 AVMNIDDPVGREFIDYT----TSNILTYGIKHQADIYADHIKITIHGTEFDLHVFDEVKH 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  H IG     N L  +G      A V   + +LS     +G   R++   +    ++I
Sbjct: 291 VKTHLIGEFNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKG---RFQLVPSNTGVSVI 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  +   +  L+  +         ++G     G+        +A++    +  
Sbjct: 348 VD-YAHTPDGLLNVLETLNDFAEQD---TYCIVGC---GGDRDAQKRPQMAKIAVDNSTH 400

Query: 403 HVWLSG----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +             + D +   I                +  +    GD +++  K 
Sbjct: 401 AILTEDNPRTEDPHKIMDDMLAGIDSDQATVIFNRREAIQYAVNRAKPGDAIIIAGKG 458


>gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 492

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 176/483 (36%), Gaps = 51/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG-FVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H +   P+  ++  G + D   + P   F A+ G    G   +  A+ 
Sbjct: 1   MKLSELLAGHDHHILQGDPETTWITAGTTFDVGRVTPGSLFIAVPGHGEGGPGSVGPALA 60

Query: 63  KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           +GA  V+V+       + +  +    V D   A   +A         +  ++AITG+ GK
Sbjct: 61  RGAAAVLVDGGAPDLPMSAAGVCAVSVPDTRTAAAVVASRYFGAPGRQMDMVAITGTNGK 120

Query: 120 TTTKEMLTIALS-SIKKTYACIGSYNNHIG-----VPLTLARMPVDVDFGIFELGMSHLG 173
           T+   M+   L  S   T   IG+  + IG     +P ++   P   D       M   G
Sbjct: 121 TSVSYMVESVLRLSEGATVGVIGTAGSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRG 180

Query: 174 ---------EIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                     +  LTH V      + V T +   HL +   +E    AK  +F+GL +  
Sbjct: 181 AGSVVLEATSMALLTHRVDCAFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR- 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N DD     ++A         + ++G   + AD++  +    +  +   +   G+ 
Sbjct: 240 -AVVNADDPVGAGIQAMMPGA----VTTYGLDTEAADYRATELTVDASGTRFVLHHDGRK 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G +   N L T+     L  D+   + AL    P  GR +R+R    +G   
Sbjct: 295 YPAAIPVPGRYSVANALATVAACHALGHDLGGLVAALDRMPPVPGRFERFRTP--RGTSV 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y  +P S+   ++ +   +P   GR I V G     G+   +   ++ E+   ++
Sbjct: 353 IVD--YAHSPDSLDKVLTTIRGFAP---GRVITVFGC---GGDRDTTKRAEMGEIAGTHS 404

Query: 401 ISHVWLSG----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              +  S         A+ D +                      F  S+    D+V++  
Sbjct: 405 DLCILTSDNPRNEDPEAILDQITPGLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAG 464

Query: 450 KSS 452
           K S
Sbjct: 465 KGS 467


>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 339

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 132/347 (38%), Gaps = 35/347 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 4   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 64  AVAIIAENQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +      
Sbjct: 179 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNP 236

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++      
Sbjct: 237 KMAVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLATPVGE 292

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             V    IG     N+L  +     L   ++ AI  L      +G  
Sbjct: 293 YTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGXF 339


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 175/482 (36%), Gaps = 49/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++L       I    +  V GI+ +S+ +    AFFAIKG   DGH+FI  A++ 
Sbjct: 1   MKLLKEIL--TDEKIIYGNQETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKN 58

Query: 64  GAGLVVVNTDMVAS-IGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKT 120
           GA ++ +  +     +   +I V   D+     AL           K  +IAITG+ GKT
Sbjct: 59  GASVIFIEDEKYIESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFE 166
           TT  +L             IG+ N  +G  +                 ++  D    +  
Sbjct: 119 TTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVV 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIF- 224
             +S     ++  +  + H  + T +   HL     +E    AK  +FE ++K       
Sbjct: 179 AEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIY 238

Query: 225 -LNYDDSFFELLKAKSH---ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD     +         +    I ++GK+   DF++  ++    ++    + +   
Sbjct: 239 SINVDDEHGRRILDYLKNHLKVNDDKIITYGKTSE-DFKILDYRLSLFETEFSYKYKDTL 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++     G     N+  T+  +     D+    +      P +G   R+     QGF  
Sbjct: 298 SKIKTKLRGVFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKG---RFEVIEGQGFIV 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +++  +  L++I  +   R I V G      +  +    + AE LS   
Sbjct: 355 VID--YAHTPDALENILKSLNEIKEN---RIITVFGAGGNRDKTKRPLMGETAESLS--- 406

Query: 401 ISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V L+  +         +  + D +     V              S   + D++++  
Sbjct: 407 -DVVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6578]
          Length = 496

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 156/470 (33%), Gaps = 45/470 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L AI+   +       V  ++ DSR +     FFA+ G H DGH F+  A+++GA  VV
Sbjct: 1   MLDAIKPEEVRGEGDPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVV 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              ++ +    +            +               +I +TG+ GK++T   +   
Sbjct: 61  HERELPSYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIYQL 120

Query: 130 LSSIKKTYACIG-----------------SYNNHIGVPLTLARM-PVDVDFGIFELGMSH 171
           L +      CI                  S      V   LARM        + E     
Sbjct: 121 LRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHG 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L         VR  + V+T I   H+      E+    K  +F GL + G   LN DD  
Sbjct: 181 LSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEEGKAVLNLDDPS 240

Query: 232 FELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              L  ++ A     ++ +G    + A       ++    S   V    +++EV     G
Sbjct: 241 SGFLAERTRAG----VWGYGLGAREGARLWAEVREESLAGSRCLVH-GRETLEVWVPFPG 295

Query: 290 YHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
               +N+L  +   +     + +  +  +       GR +R      Q F  L+D  Y  
Sbjct: 296 RFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERVEA--GQPFLVLVD--YAH 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSLYNIS-- 402
            P + +  +  + +     EGR I V G   E     +     +    AEV+ L +    
Sbjct: 352 TPGAFEKLLPFVRRF---VEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPR 408

Query: 403 ----HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L    + A  + L     +                  +GD V+
Sbjct: 409 GEDRMAIL--REIAAGCEGLMEGESLFMVPDRREAIGLAVGMAREGDAVL 456


>gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 501

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 167/464 (35%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR ++  + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT  ++L    + +
Sbjct: 82  YNLDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
             +   +AV T ++  HL     +EE A AK  +F  L  T    LN DD       AK 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELN-TKAQVLNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +A+ + T  SF        ++       +   +  +    +  +    IG     N+L 
Sbjct: 261 PNAVAVSTDASFSSDHKF-VKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVNNLLT 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A+ 
Sbjct: 320 ALASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
                  H EG    + G   +     +     +AE L+      V  +  +        
Sbjct: 380 A---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEKLA----DKVIATDDNPRTEDNAK 432

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +     +   V      +           + DV+++  K 
Sbjct: 433 IMADILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 493

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 169/473 (35%), Gaps = 47/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L    +G   G  P   + G+++DSR +     F A+ G    G +FI  A++ GA 
Sbjct: 8   LSELALTARG---GANPD--ITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAA 62

Query: 67  LVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            ++ +          + +    +   +D   AL   A         TI+A+TG+ GKT+ 
Sbjct: 63  AILTDARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSV 122

Query: 123 KEMLTIA----------LSSIKKTYACIGSYNNHIGVPLTLARMPVD-----VDFGIFEL 167
              +             L +     A      +    P+TL R   +     V     E 
Sbjct: 123 ASFVRQIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEA 182

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226
               L E R L   V    A  +     HL      E   +AKA +F+  L + G   +N
Sbjct: 183 SSHGL-EQRRL-DGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVIN 240

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     ++  + A G + I + G  + AD  L   +  +    +    +GK  +   +
Sbjct: 241 LGDPKGAEMRRIAEARG-QNILTVGP-EGADLCLLNQRFDATGQDLRFSWRGKVRQTRLN 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A+N+L+  G+V     D D     L       G   R + A  +     +   Y
Sbjct: 299 LIGGFQAENVLLACGLVIAAGEDPDRVFDTLPHLTTVRG---RMQLAATRSNGAAVFVDY 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P    A  + L  + PH  GR IA++G   +     +          +  N   V++
Sbjct: 356 AHTPD---AVATALKAMRPHVMGRLIAIVGAGGDRDATKRPLMGK----AAADNADLVFV 408

Query: 407 SGFHVLALKDALPRSIHVHYSETM----DGLFLFIQ--SSLVDGDVVVV--KS 451
           +  +  +   A  R+  +  +       D     ++   +L  GD +++  K 
Sbjct: 409 TDDNPRSEDPASIRTAVMLGAPDATEVGDRAEAILRGIDALQPGDALLIAGKG 461


>gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
          Length = 491

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 156/454 (34%), Gaps = 37/454 (8%)

Query: 24  QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
             +V G +  DSR + P +AF A  G   DG  F+  A+  GA   +V  D V + G   
Sbjct: 17  SSWVTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFED 76

Query: 83  IPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  + D+      +A A       +  ++A TG+ GKT+T      AL+ + +    +
Sbjct: 77  ARVATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGVM 136

Query: 141 GSYNN-----------HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+                  P+TL    R  VD  F    L  S +G +          +
Sbjct: 137 GTLGVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEIDV 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T     HL     +     AK  +F          +N DD     L A+  AL    
Sbjct: 197 ALFTNFTRDHLDYHGTMAAYWEAKRRLFAW-PGLKAAVINVDDEQGARLAAEPLALD--- 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++++  +  A    R  +         +     ++EV    IG +   N+L  LG +  L
Sbjct: 253 VWTYAVNGAARLVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRAL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A   +    P  GR +R       G    +   Y   P +++  +  L  ++  
Sbjct: 313 GVALADAAAVVPALTPVPGRMQRV-----PGEHVEVVVDYAHTPDALEKVLQALRPLAAA 367

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-------SHVWLSGFHVLALKDALP 419
             GR   V G         +     +A  L+   +              F +  +   + 
Sbjct: 368 RGGRLWCVFGCGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPC--FILSQILAGVA 425

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               V   E       +  ++   GDVV++  K 
Sbjct: 426 GHDEVDVIEDRHEAIAYAVANAAPGDVVLLAGKG 459


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 171/466 (36%), Gaps = 53/466 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRF 177
               A +G+  N +   +  A                     VDF   E+    L + R 
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYR- 200

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       A
Sbjct: 201 -AEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLA 258

Query: 238 K-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K   A+ + T  SF  S++   +        +   +  +    + E+    IG     N+
Sbjct: 259 KLPDAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNL 317

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A
Sbjct: 318 LTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKA 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
           +        H EG    + G   +     +     +AE L+      V  +  +      
Sbjct: 378 LQA---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDN 430

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +   +   V      +           + DV+++  K 
Sbjct: 431 AKIMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
 gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
          Length = 488

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 172/479 (35%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LLQ +   +        +  I +DSR +     F  IKG   DGHDF   A    
Sbjct: 1   MKLQTLLQHLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFAEQA---- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                    +     +L +PV  V+D   AL     A   +   +  +I +TG+ GKTTT
Sbjct: 57  -VARGAVAVVAEKPLALPVPVIYVNDSRRALAVLADAFYGQPTHQLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++        K    IG+ N  I              L L  M        VD    E
Sbjct: 116 THLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKMVDAHVDIVAME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R   H     +AV T +   HL     +E    +K  +F  L      ++ 
Sbjct: 176 VSSHALHMGR--VHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQLGNRFDHQRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+  E  K  + A    T+ ++G    +D   ++ +  +  +  ++    ++
Sbjct: 234 KFAILNADDAASEEYKKSTAA----TVVTYGIHHKSDIMAKQIEITTSGTTFQLITPIET 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++V    IG     N+L  +    +    + T ++A++      G   R+        FT
Sbjct: 290 VQVKTKLIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVPG---RFEVVDAGQPFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++  +  + Q +   + R   V+G     G+  ++    +A++   Y+
Sbjct: 347 VIVD-YAHTPDSLENVLQTIRQFA---KKRVFVVVGC---GGDRDRTKRPLMAQIAVKYS 399

Query: 401 ISHVWLSG----FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ S        L + + + + +   V           +        D++++  K 
Sbjct: 400 DVPIFTSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDIILIAGKG 458


>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 509

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 168/486 (34%), Gaps = 53/486 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA- 65
            H LL+AI       +    +  +S DSR I   + F  + G   DG +F   A+++GA 
Sbjct: 5   LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGAC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTT 122
             ++     + +  +   PV  + + +             +  S+  +I ITG+ GKTTT
Sbjct: 65  AAIISKKASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++    +S+    A  G+  N        ++                    V++G  E
Sbjct: 125 SFLIEFLTTSLGHPSALFGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVEYGAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG--TI 223
           +    L + R        + AV T ++  HL     +E    AKA +F   L + G    
Sbjct: 185 VSSHALSQNR--VAGCDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGGPRS 242

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQ 277
            +N DD +   L  + +    K  ++    +N      AD  +   +   +    ++   
Sbjct: 243 VINIDDKWGAKLAKELN----KKCWTCSLKENSQTREKADLYISNLQIMQDGYKGKLHTP 298

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-- 335
                 +   IG     NML  +GI+      ++  + AL+ F    GR +         
Sbjct: 299 FGVENFISPLIGEFNLMNMLQAVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKV 358

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +  + L+   Y   P  ++ A+     ++   + R I V G     G+  +     + EV
Sbjct: 359 KEGYPLVIVDYAHTPDGLQNALIASRSLT---KRRLICVFGC---GGDRDKGKRSKMGEV 412

Query: 396 LSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + +    V  S           +  +   +     +              +     DVV
Sbjct: 413 AAKFADYIVVTSDNPRQEDPIEIIKDIGKGITIDSEISVEPERSIAIQLAIAKAKKNDVV 472

Query: 448 VV--KS 451
           ++  K 
Sbjct: 473 LIAGKG 478


>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
 gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
          Length = 489

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 174/482 (36%), Gaps = 56/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR + P   FF +KG   DGHDF   AV++G
Sbjct: 1   MKLQTLLSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +  ++  +      V D   A+  L  A   +   +  +I +TG+ GKTTT
Sbjct: 61  AVAIVAERPLSVNVPVV-----VVPDSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             ++        K    IG+    IG     A                 +   V+F   E
Sbjct: 116 THIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R   H     +AV T +   HL     +EE  +AK  +F  L       + 
Sbjct: 176 VSSHALHQGR--VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN+DD   +  K  + A     I ++G  + +D    + +        ++     +
Sbjct: 234 KFAVLNHDDPVSQYYKHMTAA----PIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGT 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +    +G     N+L            + T  +AL+   P  G   R+        FT
Sbjct: 290 MAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPG---RFETVDEGQNFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++ A+  + Q +   +     V+G     G+  ++    +A+    Y 
Sbjct: 347 VIVD-YAHTPDSVENALKTVRQFA---KRNVYVVIGC---GGDRDRTKRPLMAQAAVRYA 399

Query: 401 ISHVWLSG-------FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV-- 449
              V+ S          +L   +A   +    Y      +    +      +GDVV++  
Sbjct: 400 DVAVFTSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQAQEGDVVLIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 630

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 107/387 (27%), Positives = 155/387 (40%), Gaps = 18/387 (4%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           +L A  +  +     ++   I ITGS GKTTTKE+  + LS          S N  I V 
Sbjct: 22  LLLAFTQAKLHRLSLTQTQFIGITGSAGKTTTKELCNLILSGSYSVMTTPQSLNTPIIVA 81

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIAS 208
            T+        F I ELG    G +     L RP I V+T I   H   F   G++ IA 
Sbjct: 82  ETMLATEKKHKFCIMELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAV 141

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-S 267
            KA++ E L K GT  LN DD   + +  +  A     +   GK+  +  +L K      
Sbjct: 142 EKAKLIEALSKNGTAILNMDDPRVKAIGERCKA----RVIWVGKNPESTIRLCKVTSRWP 197

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E   + V  QGK  EV  H  G  +A ++L  LG+       ++ AI  L    P  G  
Sbjct: 198 EPLKLTVTYQGKLYEVPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAG-- 255

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R +    +   T I +   A   S+ A    L +       R+IAV+G + +    S  
Sbjct: 256 -RMQIVTGEDDVTFIRDDMKAPYWSLLAPFKFLKEADAL---RKIAVVGSISDFSGDSTM 311

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGD 445
            +   A  L  Y    V   G +      A             T+     F+Q +L  GD
Sbjct: 312 IYKRCARELREY-ADMVIFVGDNAHRALRARKDENDSTLQGFLTLKEASSFLQKTLRPGD 370

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           +V++K SN      L  L+L+ +  IQ
Sbjct: 371 LVLLKGSN--KSDHLQRLILDRYKPIQ 395


>gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 91]
          Length = 289

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                 I  F     A           + S + +   G  ++V  + +G H A
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNA 288


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 171/464 (36%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
             +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       AK 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A+ + T  SF  S++   +        +   +  +    + E+    IG     N+L 
Sbjct: 261 PDAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLT 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A+ 
Sbjct: 320 ALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
                  H EG    + G   +     +     +AE L+      V  +  +        
Sbjct: 380 A---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDNAK 432

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  + +   +   V      +           + DV+++  K 
Sbjct: 433 IMADILNGFVQVEKVQVIHDREQAIKTAIEQTNEKDVILIAGKG 476


>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
 gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
          Length = 505

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/481 (20%), Positives = 159/481 (33%), Gaps = 50/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            HDLL  +     G      V  +  DSR   P   F A++G H DGH ++  A  +GA 
Sbjct: 4   LHDLLSDLFAELRGDD-AIMVTRVVYDSRQATPGSLFVALRGTHTDGHCYLADAASRGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
             VV       +  L   +  V D   AL  +A        S   +I +TG+ GKTTT  
Sbjct: 63  AAVVEEWPSQDVPGLR-TIARVSDTRVALAAIAARFYGHPASDLGLIGVTGTDGKTTTTF 121

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARMPV-DVDFGIFE 166
           ++   L +       IG+    I                  V   LARM    V + + E
Sbjct: 122 LIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLARMRATGVAWAVVE 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
                L E+  L H     IAV+T +   HL     IE    AK  + E +         
Sbjct: 182 ATSHGL-ELHRLDH-CPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFVRDRPERAYP 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             I LN DD     L   +   G   I  +  +  A       +   + +   ++   ++
Sbjct: 240 RGIVLNADDEGARSL---ARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRLRYGDQA 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V     G    +N L   G   +L   +D  +  L       G   R+        F 
Sbjct: 297 ADVHLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPG---RFTPIDCGQPFR 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S +  + +   ++    GR I V G   E   + +     +A  L+ + 
Sbjct: 354 VIVD-YAHTPKSFERVLPLARSLA---RGRVIVVFGSAGERDRIKRRLQGAIAARLAEFA 409

Query: 401 I---------SHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +             +        ++A           E               GD+V++ 
Sbjct: 410 VFTSEDPRHEDPDAIIAEIAEGAREAGAQEGQQFVCVEDRALAIREAFRRARPGDIVLLL 469

Query: 451 S 451
            
Sbjct: 470 G 470


>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
          Length = 492

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 176/481 (36%), Gaps = 54/481 (11%)

Query: 4   LWTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +    ++++ ++ + I       G + GI+ DSR +     FFA+ G   DG  +I  A+
Sbjct: 1   MRKLKEIVEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGK 119
            KGA  V    +         + +  V ++   L+K  L           I+ +TG+ GK
Sbjct: 61  SKGARAVFF--EGEVDNFERDVALIRVKEIFDVLSKVSLYFYNFPSKHLNIVGVTGTNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFG 163
           TTT  +L             IG+ +  I                +   L++M    V F 
Sbjct: 119 TTTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMVNKGVKFL 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L   R     V     V T +   HL     +E+   AK +IF+ LE  G  
Sbjct: 179 AMEVSSHALSLKRI--DGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHLEDEGFA 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N D+ + + +      L  K +      +  D  L+K++  +    +E+        +
Sbjct: 237 VINRDNEWTKRI-----NLADKRVLWASLEEG-DIYLKKYENTNSGMILEIATPLGDTVI 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N+L  +G++  L   ++   K LS F   +GR +  R    Q F  ++D
Sbjct: 291 DTKLRGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFIR--EGQNFNVIVD 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  +   +  + + +   +GR I V G     G+   +    + E+ +      
Sbjct: 349 --YAHTPDGLYNVLQTIKEFT---KGRVIVVFGC---GGDRDPTKRGKMGEISAKL-ADV 399

Query: 404 VWLSGFH---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--K 450
           V ++  +         +  ++  + R   + Y   E  +           + D V++  K
Sbjct: 400 VIVTSDNPRTEDPMKIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGK 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
          Length = 497

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 170/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              D+++ + G  + G      V+ ++IDSR+  P   F  IKG + DGH ++  A  +G
Sbjct: 4   NLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAAQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   +     G   I V    + +  L           K  +I +TG+ GKTTT  
Sbjct: 64  AVAALTEQETEVPDGMTVIRVPSTQEAVKTLA-PWFYDWPARKMRMIGVTGTNGKTTTTN 122

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDV-DFGIFELG 168
           +L   L+        IG+ N  I                +   L  M  +  D  + E+ 
Sbjct: 123 ILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHCDTCVMEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIF 224
              L   R     +    AV+T I   HL     +E    AKA +F  L    +   T  
Sbjct: 183 SHALALDR--VAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTKPNKTAV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD    ++  +        I ++GK K+ D     +   +    + +Q     M++ 
Sbjct: 241 FNSDDPSSAIIMPRVKT----KIMTYGKGKDNDVYPLTFHVAASHMELNLQTPVGEMDLK 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G     N++ ++          +  I+ L  F    G   R++       FT++ +
Sbjct: 297 LHITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPG---RFQLIHAGQPFTVVVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++  +    QI+   +G+   V G     G+  +     + ++        V
Sbjct: 354 -YAHTPDGLENVLKTARQIT---KGKLWVVFGA---GGDRDRKKRPIMGKIALDLADIAV 406

Query: 405 WLSG--------FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S           +  +++ L   P    +H          ++ +     DVV++  K 
Sbjct: 407 VTSDNPRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKG 466


>gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 515

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 135/395 (34%), Gaps = 28/395 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR I     F A++G   DGHDF+  AV +GA  V+        +    +      
Sbjct: 32  ISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVICEEFPGGDVPP-GVCFIKAP 90

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL + A         +  +I ++G+ GKTTT  ++   L+        IG+    I
Sbjct: 91  DARLALAEAAFALYGGASEQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCGYIGTGRAVI 150

Query: 148 GVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           G                  L R  VD       + +S    +    H VR  +AV T + 
Sbjct: 151 GDEEIPLERTTPEAHGLHRLLRRMVDEGCRAVAMEVSSHALMLQRVHGVRFRVAVFTNLT 210

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E  ASAK  +F  L   G    N DD     +               G  
Sbjct: 211 VDHLDFHGSMEAYASAKQRLFRQLLPEGRAVFNMDDPRAPFMAEGLPPASCSGCSLSGVE 270

Query: 254 KNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + AD       F      + ++ S + +       +      G     N L+       +
Sbjct: 271 RRADRSVCGEWFLAEVTGEDAQSSHLRLSFPDGMFDGELLLPGRFNVMNALLAAATCHAM 330

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A  +     P +GR +R       G    I + Y   P +++  +  L+++ P 
Sbjct: 331 GVSGGAAAASFPFLPPVQGRMER--VDGGPGRVRAIVD-YAHTPDALQRVLQTLARLKPA 387

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             GR   V G   +     +     +AE ++   I
Sbjct: 388 -GGRLAVVFGCGGDRDPSKRPVMGRIAEEIADMVI 421


>gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 493

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 172/475 (36%), Gaps = 49/475 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+ G +I +     +  + +DSR+  P   F A+KG   DG  +I  A++KGA  V+ 
Sbjct: 4   LTALLGQAI-VPKTIKLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLS 62

Query: 71  NTDMVASI----GSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             D             +PV     +   L+++          K T+I +TG+ GKTT  +
Sbjct: 63  EADNADQHLQIEWHQDVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQ 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELG 168
           +L      +  T A +G+  N +   +  A                 +    DF   E+ 
Sbjct: 123 LLAQWTKLLGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G ++     +   +A+ T ++  HL     +E  A+AK  +F  L+      +N D
Sbjct: 183 SH--GLVQHRVEALDFDVAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQ-IINAD 239

Query: 229 DSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    E L     A+ +     F  ++    +  K    ++ + ++ +    + E+    
Sbjct: 240 DPVGVEWLAELGSAVAVSCREDFHPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGL 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L+    +  L  D D  ++  S      G   R          T I + Y 
Sbjct: 300 IGEFNVSNLLLVFATLLSLDYDFDELLRTASSLTGVCG---RMEMLTQSNQPTAIVD-YA 355

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++ A+        H +G+   V G   +     +     +AE L+      V ++
Sbjct: 356 HTPDALEKALQA---ARLHCQGQLWCVFGCGGDRDTGKRPLMAHIAERLA----DKVIVT 408

Query: 408 GFHVL-ALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451
             +      + + + I + + +          +    F        D +++  K 
Sbjct: 409 DDNPRTEAAEKIMQDILLGFEDQSAVKILHDREQAIAFAIEQADPEDTILIAGKG 463


>gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
 gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
          Length = 485

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 158/459 (34%), Gaps = 48/459 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIG 79
           P   V+GI +DSR +A  + F A+ G   DG D+I  A+  GA  ++          + G
Sbjct: 15  PNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAILAEGSSLRYEENGG 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++ + + GV + L  +            AT+I +TG+ GKT+   +       +  T A 
Sbjct: 75  AVCVFMPGVKEQLSEIAGRF-FNHPSRHATLIGVTGTNGKTSVTHLAAQLAEKLGYTAAV 133

Query: 140 IGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+  + +   L   +                     DF   E+    L  ++     +R
Sbjct: 134 IGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAMEVSSHAL--VQRRVEALR 191

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T I+  HL     +     AK  +FE  E      +N DD +       +    
Sbjct: 192 FDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDFELNHR-VINLDDRYLRDWLEGASNGL 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S      A+ Q+         +   +  +G+  +     +G     N++  + I+
Sbjct: 251 S---ISLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFSTPLLGRFNVYNVVSAVAIM 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +    +      P  GR + ++     G   L+   Y   P +++  +  L   
Sbjct: 308 LAQKQSLTAIAQHCRHLSPVPGRMEAFQ----AGSSALVVVDYAHTPDALQQVLQALR-- 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H +G+   V G     G+  +     + +V + +    V ++  +         +  +
Sbjct: 362 -LHCKGKLWCVFGC---GGDRDRGKRPQMGQVAAEF-ADRVVVTDDNPRTEAPQQIIADI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +     VH  E      L         DVV++  K 
Sbjct: 417 MAGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKG 455


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 167/465 (35%), Gaps = 53/465 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSR----SIAPQEAFFAIKGPHYDGHDFILHA 60
           +    +   + G   G      V  +  DSR     +     F A+ G ++D H F+   
Sbjct: 3   YRLSQIAAVVGGRFSGT--DCEVQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQM 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +G    +V   + A      +    V++ + AL  LA   R + + T++ ITGS GKT
Sbjct: 61  YARGVRAFMVERPLEALPECGYV---VVENAIAALQCLAAYHRAQFRGTVVGITGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE +   L +  K Y    SYN+ +GVPL++  +  D    + E G+S  GE+  L  
Sbjct: 118 VIKEWIAEELPAGMKCYRSPKSYNSQLGVPLSVLMIEGDEQLALIEAGISKPGEMARLER 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKS 239
           ++RP + V T+I  AH  NF  +E+    K  +    E   TI  + Y +    ++ ++ 
Sbjct: 178 IIRPDVVVFTSIGDAHQENFLNLEQKCDEKMVLAHRAE---TIVYHSYYEPLGRMIASRF 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                                   K C   S  EV                   +N  + 
Sbjct: 235 AGR---------------------KLCDAASCPEV--------PETLIGNEASRRNARIV 265

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +             F        R           LI+++YN +  S+  A+  
Sbjct: 266 EAFCAAMGYPA-------PSFTEAPEVAMRLEVKDGINDSVLINDAYNLDLNSLALALDY 318

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  ++     RR  VL D+ + G      +  +A +++   +  +   G  +        
Sbjct: 319 LHNVALS--RRRTLVLSDIAQSGLTDDELYGRVAGMVARAGVDTLVGIGPKLKRYAALF- 375

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +  + D     I    V G  V++K +    F +L + L
Sbjct: 376 -GCDREFYASTDECIARIGRRAVAGRAVLLKGAREYRFEKLAHAL 419


>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 550

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 171/461 (37%), Gaps = 53/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++
Sbjct: 79  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 133

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193

Query: 142 SYNNHI-----------GVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187
           +    I              +T  R    +     E   + +S +  +      +   IA
Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSH 240
           V T +   HL     + +   AKA +F  L              LN DD      +  + 
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + +FG   +A    +  +  S  +  ++ + G    V    IG     NML   
Sbjct: 314 A----HVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAF 369

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     D  IK+L      +G   R++   +    ++I + Y+  P  +  A+  +
Sbjct: 370 AAAYASGIPEDQIIKSLEKVTGVKG---RFQSVPSHTGVSVIVD-YSHTPDGLLNALETI 425

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVL-- 412
              +         V+G     G+  ++    +A++   ++   ++ S         ++  
Sbjct: 426 QDFATKD---IYCVVGC---GGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILN 479

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +P +    Y +    +   I+++   GDVV++  K 
Sbjct: 480 DMVAGVPNADVPVYEDRHVAIAKAIEAA-QPGDVVLIAGKG 519


>gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 7894]
 gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 289

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                 I  F     A           + S + +   G  ++V  + +G H A
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNA 288


>gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
 gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
          Length = 276

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 122/283 (43%), Gaps = 16/283 (5%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I   HL      + I  AK EIF+ L+ TG I LN DD     L    +  GI+ +
Sbjct: 1   MITNIGLCHLEFLKSRDGILKAKTEIFDFLKPTGHIILNVDDD---KLVTVENVKGIQPM 57

Query: 248 YSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + FG          + K    +     +  +  +  V+    G+HM  N L    +    
Sbjct: 58  F-FGIENKNGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGTAVGLTY 116

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
           +  ++     +    P  GR          G +T++D+ YNANP SMKA++ VL+     
Sbjct: 117 SLSLEEIKAGIESLQPVSGRFHIIDT----GKYTVVDDCYNANPVSMKASLDVLTDA--- 169

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
             GR++A+LGDM E+G+     H ++       N+  +   G     + +A   +     
Sbjct: 170 -LGRKVAILGDMGELGKEEVEMHREVGVYAVSKNLDLLICMGELSQYMAEAAKHAAPTKP 228

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + + +T + L   +   L  GD  +VK+S+  GF  ++  L +
Sbjct: 229 IFHFKTKEELLQELPQILQKGDTALVKASHFMGFEDVVKELEK 271


>gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
 gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
          Length = 497

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 166/464 (35%), Gaps = 41/464 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +        + GI++DSR +     F A+ G    G +FI +A+++GA  V+ + +  
Sbjct: 15  GLTAHGGRDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGA 74

Query: 76  ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      +   +D   AL   A     +    + A+TG+ GKT+    L     
Sbjct: 75  RIAERDLAESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWM 134

Query: 132 SIKK------TYACIGSY----NNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIR 176
            + +      T    GSY     +    P+TL RM  +     +     E     L + R
Sbjct: 135 LVGREAVNLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRR 194

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V   +   T +   HL     +EE   AKA +F   L       +N D      +
Sbjct: 195 L--DGVMLRVGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDM 252

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              +   G+  + + G  ++A+ ++   +  ++   M     G+  +V  + IG   A+N
Sbjct: 253 AEVAADRGL-DVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAEN 311

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+  G+  +   D D     L       G   R   A  +     +   Y   P ++  
Sbjct: 312 VLVAAGMAILSGEDPDQVFTVLPALSTVHG---RMELAARRTNGAAVFVDYAHTPDAVAT 368

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FH 410
           A+  L    PH  GR +AV+G   +     +    +     +  +   V+++        
Sbjct: 369 ALKALR---PHVLGRLVAVIGAGGDRDRTKRPLMGE----AAAAHADLVFVTDDNPRSED 421

Query: 411 VLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             A++ A+                 L    +L  GD +++  K 
Sbjct: 422 PAAIRQAVLLGCPDATEVADRAEAILRAVDALAPGDALLIAGKG 465


>gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 488

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 171/467 (36%), Gaps = 44/467 (9%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+        P G    + +DSR I   + FFA+KG H DG  FI  A   GA  VV   
Sbjct: 6   AVAAEIKRFAPAGA--ALLLDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK 63

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIAL 130
                IG  S+PV  +D++  AL  +A A    S A +I  A+TG+ GKTTT   +   +
Sbjct: 64  G---DIGPCSVPVIEIDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLM 120

Query: 131 SSIKKTYACIGSYNNHIGV------------PLTLARMPVDV---DFGIFELGMSHLGEI 175
           + +    A IG+    +              PLTL     ++       F +  S +G  
Sbjct: 121 NRLGTPCASIGTLGCTLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLE 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +          AV T +   HL     +E    AK  +F       +  +N      + +
Sbjct: 181 QGRLDGTEIKTAVFTNLTRDHLDYHGTMENYLRAKEILF-RWPTVASAVINQSGEPAQQI 239

Query: 236 KAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +   G K I +      + A       +   E    EV+ +G +  V  H +G    
Sbjct: 240 MKTAEGAG-KAILTVSAKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNV 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L T+G +  +  +++T +K ++   P  GR +  R         +    Y+  P ++
Sbjct: 299 ENFLCTVGAMISVGFEIETVLKEVAKLMPPAGRMQIVR----DDHGPIFAVDYSHTPDAV 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             AI  L  ++    GR   V+G   +     +          +      V L+  +  +
Sbjct: 355 TQAIKALEGLAEARGGRIWIVVGAGGDRDHGKRPLMGQ-----AACAADEVVLTSDNPRS 409

Query: 414 --LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              K+ L +     +      E       +        DV++V  K 
Sbjct: 410 EDAKEILKQIQAGTTKPCTVIEDRRKAIEYAAEHAAADDVILVAGKG 456


>gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
 gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
          Length = 483

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 156/451 (34%), Gaps = 41/451 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + GI+ DSR + P   F A++G   DG  +I  A+++GA  +V  TD  A + + S+PV
Sbjct: 20  EITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQAIV--TDCNAVLENFSVPV 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN- 144
             V DV  +L   A          ++A+TG+ GKT+    L    + +    A IG+   
Sbjct: 78  LRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVVSFLRQIWTHVGLCAASIGTVGI 137

Query: 145 ----------NHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          P+ L R+        V     E     L + R     VR   A  
Sbjct: 138 VSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEASSHGLDQSRL--DGVRLTAAAF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   H+     +E+   AK  +F+  L +     +  DD + + +         + I 
Sbjct: 196 TNLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFADDIYSQKVIDIV-TKARRRIL 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+       + + +    +  +E +++           G     N LM  G+      
Sbjct: 255 TIGRKGKF-ITINRIEHQRLKQCVECRVENNIYTFDLPLAGNFQVTNALMAAGLAIATGV 313

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                  +L +     GR +      N     +    Y   P +++    VL  + P  +
Sbjct: 314 SPKKVFHSLEILQGAPGRLELVGKTENNAPVYI---DYAHKPEALE---QVLLSVRPFTQ 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422
           GR I V G   +  +  +     +AE         V ++  +          KD L  + 
Sbjct: 368 GRLILVFGCGGDRDQGKRPLMGKIAE----NKADIVIVTDDNPRTEMPEKIRKDILQAAP 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        +    L   D +++  K 
Sbjct: 424 RAIEIADRGEAISYAVGLLKAEDTLIIAGKG 454


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 172/464 (37%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
             +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       AK 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +A+ + T  SF  S++   +        +   +  +    + E+    IG     N+L 
Sbjct: 261 PNAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVNNLLT 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A+ 
Sbjct: 320 ALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
                  H EG    + G   +     +     +AE L+      V  +  +        
Sbjct: 380 A---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDNAK 432

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  + +   +   V      +           + DV+++  K 
Sbjct: 433 IMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 171/466 (36%), Gaps = 53/466 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRF 177
               A +G+  N +   +  A                     VDF   E+    L + R 
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYR- 200

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       A
Sbjct: 201 -AEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLA 258

Query: 238 K-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K   A+ + T  SF  S++   +        +   +  +    + E+    IG     N+
Sbjct: 259 KLPDAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNL 317

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A
Sbjct: 318 LTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKA 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
           +        H EG    + G   +     +     +AE L+      V  +  +      
Sbjct: 378 LQA---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDN 430

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +   +   V      +           + DV+++  K 
Sbjct: 431 AKIMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 488

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 170/467 (36%), Gaps = 44/467 (9%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+        P G    + +DSR I   + FFA+KG H DG  FI  A   GA  VV   
Sbjct: 6   AVAAEIKRFAPAGA--ALLLDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK 63

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIAL 130
                IG  S+PV  +D++  AL  +A A    S A +I  A+TG+ GKTTT   +   +
Sbjct: 64  G---DIGPCSVPVIEIDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLM 120

Query: 131 SSIKKTYACIGSYNNHIGV------------PLTLARMPVDV---DFGIFELGMSHLGEI 175
           + +    A IG+    +              PLTL     ++       F +  S +G  
Sbjct: 121 NRLGTPCASIGTLGCTLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLE 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +          AV T +   HL     +E    AK  +F       +  +N      + +
Sbjct: 181 QGRLDGTEIKTAVFTNLTRDHLDYHGTMENYLRAKEILF-RWPTVASAVINQSGEPAQQI 239

Query: 236 KAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +   G K I +      + A       +   E    EV+ +G +  V  H +G    
Sbjct: 240 MKTAEGAG-KAILTVSAKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNV 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L T+G +  +  +++T +K  +   P  GR +  R         +    Y+  P ++
Sbjct: 299 ENFLCTVGAMISVGFEIETVLKEAAKLMPPAGRMQIVR----DDHGPIFAVDYSHTPDAV 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             AI  L  ++    GR   V+G   +     +          +      V L+  +  +
Sbjct: 355 TQAIKALEGLAEARGGRIWIVVGAGGDRDHGKRPLMGQ-----AACAADEVVLTSDNPRS 409

Query: 414 --LKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              K+ L +     +      E       +        DV++V  K 
Sbjct: 410 EDAKEILKQIQAGTTKPCTVIEDRRKAIEYAAEHAAADDVILVAGKG 456


>gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 483

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 161/476 (33%), Gaps = 53/476 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + +            +  +  DSR +     FFAIKG   DGH +I  AV+ G
Sbjct: 1   MDLKQMSELLGYTL--EHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV    +  +        F V +   AL  ++            ++ + G+ GKTT 
Sbjct: 59  AIAVVGEESLNPACL-----YFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTI 113

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV---------------DVDFGIFEL 167
             ++      +      IG+  + +G     +R                  ++ + + E+
Sbjct: 114 TYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEV 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EI-FEGLEKTGTIF 224
               + E R     +     + T I   HL      E+    K    I F   +      
Sbjct: 174 SSHGIKENR--VDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N DD       + +++     I ++G    AD   +  +   E++   + ++G+ + ++
Sbjct: 232 INCDDEHASSFISVTNS----KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQM 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N+L  L     L    +  +  +      EGR +  +     G   +ID
Sbjct: 288 TIPLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS--GVTVVID 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  NP ++     VLS ++    G  I VLG     G   ++    +    +  +  H
Sbjct: 346 --YAHNPDAI---FQVLSCLNVISTGNIITVLGA---GGNRDKAKRKIMGRHATYLS-DH 396

Query: 404 VWLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKS 451
           V+ +  +         + D L  +  V+Y      +             D VV+  
Sbjct: 397 VFFTSDNPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILG 452


>gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 464

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 182/456 (39%), Gaps = 20/456 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFIL 58
           M PL +  +L     G+ +       +   +   + +       F + +  ++       
Sbjct: 1   MKPL-SVKNLAMITAGYLVHGSEDTLIQHGAYRLKQVKKSNTALFTSKRIVNW------K 53

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   ++V +     S     + +  V +   A  K     R +    I+AITG+ G
Sbjct: 54  SLEPLSPLVLVTDRVYRPSDIPDHVMLIQVANAEEAYWKFVHFYRSQFHIPIVAITGTSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   LS+ +K  A   S N+       L  +  D +  +FE  +   G++   
Sbjct: 114 KTTTKEMIKHILSADRKVTATTLSSNSRTASLQYLLGIEDDTEAAVFETAVGSPGDVTNA 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +P I +IT I   HL+    +E    AK E+ + +   GT+ +N +D   + +   
Sbjct: 174 GRYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGTLIINAEDMNTKKIDVS 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +  +   GK  + DF+        +     +    KS +++  G G H   N L 
Sbjct: 234 RFRGRLIKV---GKHDSCDFRASHIHYYQKGMKFILHHDRKSYDILVPGFGEHQVYNALA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  V  +   +  A K L  F   + + + +    +     L+D++++    S++AA+ 
Sbjct: 291 AIAAVHDMGMPIPVAAKQLQSFRLLKKQLQLFEGINH---SMLLDDTWSITTTSLEAALK 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-- 416
           VL+++      ++IAV+G + ++G      H    E++    +  +   G H   + D  
Sbjct: 348 VLNEL--GDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLITIGEHARIMADHA 405

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             L  S  V+  +    ++  +Q  + +  ++++K 
Sbjct: 406 VKLGFSAPVYTFKNSTLVYPLLQKIVDENTIILIKG 441


>gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
 gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
          Length = 496

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 163/482 (33%), Gaps = 57/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + +++G
Sbjct: 1   MNASALFEKIRVKNVIGTLDKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             +VVVN ++        +    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNRELEL---DGEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------------------ 164
             M+ +    + K  A +G+    I    T           +                  
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMT 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKT 220
            E+    L   R     V   +A+ + +   HL     +E    AK+ +F    E L K 
Sbjct: 178 MEVSSHGLSLGRL--RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKE 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD F   L + +       ++++G    A F  +   +  +    +       
Sbjct: 236 KYVVLNNDDDFSHYLASVTPY----EVFTYGIDNEAQFMAKNIDESLQGVEFDFSTPFGD 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G     N++  +  V    A ++  I A++   P EG   R           
Sbjct: 292 YRVKSPYVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEG---RLEVLDPSLPID 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LI + Y      M   I     + P  + + I ++G M   GE   +   ++  V     
Sbjct: 349 LIID-YAHTADGMNKLIDA---VKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVA--CR 399

Query: 401 ISHVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             +V  +  +            L        +V + +  +G+   I      GD VV+  
Sbjct: 400 ADYVIFTPDNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIKHAI-DVAEPGDTVVLAS 458

Query: 450 KS 451
           K 
Sbjct: 459 KG 460


>gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
          Length = 485

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 161/476 (33%), Gaps = 53/476 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + +            +  +  DSR +     FFAIKG   DGH +I  AV+ G
Sbjct: 3   MDLKQMSELLGYTL--EHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV    +  +        F V +   AL  ++            ++ + G+ GKTT 
Sbjct: 61  AIAVVGEESLNPACL-----YFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV---------------DVDFGIFEL 167
             ++      +      IG+  + +G     +R                  ++ + + E+
Sbjct: 116 TYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEV 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EI-FEGLEKTGTIF 224
               + E R     +     + T I   HL      E+    K    I F   +      
Sbjct: 176 SSHGIKENR--VDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAI 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N DD       + +++     I ++G    AD   +  +   E++   + ++G+ + ++
Sbjct: 234 INCDDEHASSFISVTNS----KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQM 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N+L  L     L    +  +  +      EGR +  +     G   +ID
Sbjct: 290 TIPLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS--GVTVVID 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  NP ++     VLS ++    G  I VLG     G   ++    +    +  +  H
Sbjct: 348 --YAHNPDAI---FQVLSCLNVISTGNIITVLGA---GGNRDKAKRKIMGRHATYLS-DH 398

Query: 404 VWLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKS 451
           V+ +  +         + D L  +  V+Y      +             D VV+  
Sbjct: 399 VFFTSDNPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILG 454


>gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
 gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
          Length = 482

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 174/448 (38%), Gaps = 54/448 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+++S+ +     FFAIKG  +DGH+FI  A ++GA  VVV   +     S  +PV 
Sbjct: 23  VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPV-----SSKVPVI 77

Query: 87  GVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D   AL K       +   +  +I ITG+ GKTTT  ++   L    +    IG+  
Sbjct: 78  IVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIY 137

Query: 145 NHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +              +T  R   +         + E+    L + R   +  R    +
Sbjct: 138 YRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYR--VYPTRFEAVL 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E+  ++KA++F    ++    +N DD++ + L   +H      I 
Sbjct: 196 FTNLSQDHLDYHKTMEDYFASKAKLFTE-YESKVKIINADDTYGKRLLKITHG----EII 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G  K  D ++  ++     S + +  +GK  E   + IG   A N+   +        
Sbjct: 251 TYG--KKGDLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALWKGI 308

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + D   +A          G R+    +  F  +ID  Y   P +++  +    ++S   +
Sbjct: 309 EPDLIQRA---LKCVNVPG-RFEVVHSDKFTVIID--YAHTPDAVENVLRTARKLS---K 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALP 419
           G+ I+V G     G   +     + +    Y+   + L+  +         +  + D + 
Sbjct: 360 GKLISVFGA---GGNRDREKRPLMGKAAEKYS-DLIILTSDNPRDEEPEKIIEDILDGIS 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               V                  +GD+V
Sbjct: 416 EKDKVIIEADRRKAIKKAIDMAKEGDMV 443


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 171/464 (36%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
             +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       AK 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A+ + T  SF  S++   +        +   +  +    + E+    IG     N+L 
Sbjct: 261 PDAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLT 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A+ 
Sbjct: 320 ALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
                  H EG    + G   +     +     +AE L+      V  +  +        
Sbjct: 380 A---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDNAK 432

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  + +   +   V      +           + DV+++  K 
Sbjct: 433 IMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 1313]
          Length = 485

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 166/476 (34%), Gaps = 52/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL++ +    +       +  I+ DSR       F  I+G   DGH FI  A++ G
Sbjct: 1   MKLKDLVKGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKFIPQAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
               +V  D+     +    V  V D   AL  +         SK  ++ ITG+ GKTTT
Sbjct: 61  TRAFLVQKDVDVPDDAT---VVRVKDTRYALASVADIFFGHPSSKFNLVGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L +  +    +G+  N I                L  +       +V+  + E
Sbjct: 118 TYMIKSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQELFSEMVQKNVNSVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         I V T ++  HL      E   +AK ++F G+ K G   +N
Sbjct: 178 VSSHALELHRVSC--CEYEIGVFTNLSRDHLDFHKTFENYLNAKIKLF-GMCKKG--LIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+ F   +   +       +Y+ G    AD +        +     V     + +V  +
Sbjct: 233 IDNEFGPKVVDSARC----EVYTMGIDNKADLRAVDIVHHPDSVDFTVVSPWFTGDVRVN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +G  +++    +   K           G+     + + +  +ID  Y
Sbjct: 289 IPGKFSVYNALAAIGTCALMGVPFEYIKKG---LEKVTVPGRAEVLDIKKDYTVMID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P S++  ++ +   +P   GR + V G     G+  ++    +  +        +  
Sbjct: 344 AHSPDSLENILTTVKAYAP---GRVVCVFGC---GGDRDKTKRPIMGRISGQLADFTIIT 397

Query: 407 S--------GFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +++ + ++  ++           +   +    D++++  K 
Sbjct: 398 SDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGKG 453


>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
 gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
          Length = 481

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 86/495 (17%), Positives = 177/495 (35%), Gaps = 64/495 (12%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +       VN +  DSR +   + F A KG + DGH ++  A+  GA  ++   +  +
Sbjct: 7   KQVFGNTNIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIIC--EGFS 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V D   AL  +A        +K  ++ +TG+ GKTT   +L    +   
Sbjct: 65  FDRKEGITYIRVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAG 124

Query: 135 KTYACIGSY-----------NNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFL 178
                + +             +     +T+ R     +   V++   E+    + + R  
Sbjct: 125 YKVGLLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKR-- 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  ++    + T ++  HL       E  + K + F+ L K+     N DD     +   
Sbjct: 183 TEGLQFSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDDLPKSAFALTNIDDKNGNYMLQN 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A      YS+     ADF+ +  ++    + + +     + EV    IG     N+  
Sbjct: 243 TKAKK----YSYALKTLADFKAKILEKQLSGTLISID----NTEVWTKLIGVFNIYNLTA 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +    +L  +    +  +S      G   R+   +++   T I + Y   P ++K  + 
Sbjct: 295 IIATAELLGLEKLDILTIVSQLESVNG---RFEYVVSEDGVTAIVD-YAHTPDALKNVLE 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            ++ I  + E + I V+G     G+  +S    +A + +  +   ++ S          +
Sbjct: 351 TINDIRTNNE-KVITVVGC---GGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQII 406

Query: 415 KDALPRSIH-VHYSETMD-----GLFLFIQSSLVDGDVVVV--KS-----------SNSC 455
            D +   I   HY++T+                  GD++++  K            S+  
Sbjct: 407 LDEMEAGISPEHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHESYQEINGVRSHFN 466

Query: 456 GFYRLI---NLLLEE 467
               +    N L ++
Sbjct: 467 DLEEVTNCFNQLKKK 481


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 173/466 (37%), Gaps = 53/466 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNH---------------IGVPLTLAR-MPVDVDFGIFELGMSHLGEIRF 177
               A +G+  N                I V   LA  + +  DF   E+    L + R 
Sbjct: 142 GGKSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR- 200

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       A
Sbjct: 201 -AEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLA 258

Query: 238 K-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K   A+ + T  SF  S++   +        +   +  +    + E+    IG     N+
Sbjct: 259 KLPDAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNL 317

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A
Sbjct: 318 LTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKA 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
           +        H EG    + G   +     +     +AE L+      V  +  +      
Sbjct: 378 LQA---ARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELA----DKVIATDDNPRTEDN 430

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +   +   V      +           + DV+++  K 
Sbjct: 431 AKIMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 550

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 171/461 (37%), Gaps = 53/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++
Sbjct: 79  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 133

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193

Query: 142 SYNNHI-----------GVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187
           +    I              +T  R    +     E   + +S +  +      +   IA
Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSH 240
           V T +   HL     + +   AKA +F  L              LN DD      +  + 
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + +FG   +A    +  +  S  +  ++ + G    V    IG     NML   
Sbjct: 314 A----HVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAF 369

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     D  IK+L      +G   R++   +    ++I + Y+  P  +  A+  +
Sbjct: 370 AAAYASGIPEDQIIKSLEKVTGVKG---RFQSVPSHTGVSVIVD-YSHTPDGLLNALETI 425

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVL-- 412
              +         V+G     G+  ++    +A++   ++   ++ S         ++  
Sbjct: 426 QDFATKD---IYCVVGC---GGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILN 479

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +P +    Y +    +   I+++   GDVV++  K 
Sbjct: 480 DMVAGVPNADVPVYEDRHVAIAKAIEAA-QPGDVVLIAGKG 519


>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 483

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 166/473 (35%), Gaps = 48/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D   L A               +I ITG+ GKTT   
Sbjct: 63  AVLSSLYNPF----LSVVQIIAEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELG 168
           ++   +         IG+  +                I +    A M   ++   + E+ 
Sbjct: 119 LVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +G              V+T I   HL     +EE  +AK + F  L + G   +N D
Sbjct: 179 S--IGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +       S A  +    S+   + AD++  + K  S  S  ++  QGK        I
Sbjct: 237 CEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFPCETSLI 292

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+L +L +V   L  D    ++ +      +GR          G F +  + Y 
Sbjct: 293 GEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILL----GPFPVYID-YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
             P ++     +L Q+ P   GR I V G   +   + +     ++E    Y  S V   
Sbjct: 348 HTPDALDNVCRILLQLLPKY-GRLIIVFGCGGDRDRVKRPLMAKVSEH---YGFSFVTSD 403

Query: 407 ------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +        +V  S+    +   I S   D D+V+V  K 
Sbjct: 404 NPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAI-SMASDKDIVLVAGKG 455


>gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 524

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 171/469 (36%), Gaps = 55/469 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +++DSR++ P + F A +G   DG  FI HA+++GA  VV   D  A       P   
Sbjct: 33  EHLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKTPNLP 92

Query: 88  VDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V D+          +      K  +I +TG+ GKT+    +  A++++ +  A IG+   
Sbjct: 93  VPDLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGTLGA 152

Query: 146 HIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                +  +                 +    +    E+     G ++   +     +A++
Sbjct: 153 GFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSH--GIVQGRINGATFAVAML 210

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-Y 248
           T ++  HL     +E  A+AKA +F          LN DD F   L       G   I Y
Sbjct: 211 TNLSRDHLDYHGTMEVYAAAKARLF-HWRGLKYAVLNLDDVFGMQLLHDLEGTGTGMIGY 269

Query: 249 SFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            F    +A            R  +        +++ +G+ ++     +G   A N+L  L
Sbjct: 270 GFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNASNLLGVL 329

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +         A++AL    P  G   R +    +G   LI   Y   P +++  ++ L
Sbjct: 330 ATLLASGIAFPEAVRALQKVQPVAG---RMQQIGGEGDEPLIVVDYAHTPDALEKVLTTL 386

Query: 361 SQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +             G GR + V G   E  +  +    ++A  L+        ++  + 
Sbjct: 387 REAVDAGFPGGKPETGSGRLVCVFGCGGERDQGKRPLMGEVATRLA----DEAIITSDNP 442

Query: 412 LALK-DALPRSIHVHYSETM---DGLFLFIQSSLV---DGDVVVV--KS 451
            +   D++ R I V  +            I  ++     GDVV++  K 
Sbjct: 443 RSEDPDSIIRGIAVGAAANHRIEKDRAAAIHRAIRGTHKGDVVLIAGKG 491


>gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 478

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 101/461 (21%), Positives = 171/461 (37%), Gaps = 48/461 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I ++    VN    +S  I   + F   +G  +DGH +   AV +GA  V+ N  +    
Sbjct: 10  IEVLKSLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPL---- 65

Query: 79  GSLSIPVFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             + IPV   D    +L  +         K   I +TG+ GKTT    L   L+    T 
Sbjct: 66  -DIDIPVIMTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQT-TTS 123

Query: 138 ACIGSYNNHIGVP-----------LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHL 181
           A IG+    +              +TL  +       + +F + EL    L + R     
Sbjct: 124 AYIGTLGAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDR--AGF 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   I +IT I   HL      +    AK ++ + +   GT  +N DD       A   A
Sbjct: 182 VSLQIGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDPHAA--AAIERA 239

Query: 242 LGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            G   + +FG ++  A       +     S  E+++ G+  +V          +N L   
Sbjct: 240 SGRVNVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIA 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L         AL         G+    +LN G   L+D ++NA+  S      +L
Sbjct: 300 ASLLSLGWQSSRIAAALQTI--VAPDGRAQFLSLNNGATGLVDYAHNADGLS-----KLL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             + P+ +GR I V G   +  + +      +  + S    + V+ S   +   ++ + R
Sbjct: 353 EDVRPYTKGRLIVVTGVTGDRIQDA----SGIGVLCSQLADTAVFTSDNPMGVDQEDIFR 408

Query: 421 SI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KSS 452
           ++      V + E         F +   V GD++VV  K S
Sbjct: 409 ALTSQVSKVPHFEISDRAEAIEFAKQLSVAGDLIVVCGKGS 449


>gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 161/456 (35%), Gaps = 42/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79
              + GI++DSR +     F A+ G    G +FI +A++ GA  V+ + +       ++ 
Sbjct: 20  NPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTDAEGAKIAAEALA 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---------- 129
             +  +   D    AL + A        AT+IA+TG+ GKT+    +             
Sbjct: 80  GSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVRQIWVEMGLPAVN 139

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRP 184
           L +     A      +    P+TL R   +           E     L + R     V  
Sbjct: 140 LGTTGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGLDQRRL--DGVTL 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL      E   +AKA +F   L + GT  +N DD     + A + A G
Sbjct: 198 KAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGIDIAAIARARG 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + + G+    D  L+  +  +    +    +GK+ +   + IG     N+L+  G+V
Sbjct: 258 CE-VITVGRD-GGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDNVLLAAGLV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               AD       L       G   R + A  +     +   Y   P    A  + LS +
Sbjct: 316 IACGADAQEVFDTLPHLTTVRG---RMQLAATRDNGAAVFVDYAHTPD---AVATALSAM 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
            PH  GR +A++G   +   + +          +  N   V ++  +  +          
Sbjct: 370 RPHVMGRLVAIVGAGGDRDRVKRPLMGQ----AAAENADMVIVTDDNPRSEDPASIRAAV 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L  +             L    +L  GD +++  K 
Sbjct: 426 LSGAPDAWEVGDRAEAILRGVDALEPGDALLIAGKG 461


>gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
 gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
          Length = 503

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 97/474 (20%), Positives = 166/474 (35%), Gaps = 46/474 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+     G   +  + G+S+DSR +     FFA+ G    G DFI +A++ GA  ++ 
Sbjct: 12  LAALGLRGQGGR-EATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILT 70

Query: 71  NTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +          +   +  +   +D  GAL   A         T+IA+TG+ GKT+     
Sbjct: 71  DAQGAQIAANELAESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFA 130

Query: 127 TIA----------LSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
                        L +       T+    +    I +  TLA    +    +     SH 
Sbjct: 131 RQIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEASSHG 190

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSF 231
            + R L  +V    A  T  +  HL      E    AK  +F   L + G   +N DD  
Sbjct: 191 LDQRRLDGVV-LSAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPK 249

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +   +   G++TI + G+  +A  +L   +  S    +    Q  S       IG  
Sbjct: 250 GPEVVQIAQNRGLETI-TVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGF 308

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N+L+   +V     D +     L       GR +      N G   +    Y   P 
Sbjct: 309 QADNVLLATALVIAAGGDPEEVFDTLPYLTTVRGRMQHAATRRNGGSVFV---DYAHTPD 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
              A  + L  + PH  G+ IA++G   +     +          +  N   V+++  + 
Sbjct: 366 ---AVATALMAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQ----AAAQNADMVFVTDDNP 418

Query: 411 ---------VLALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVV--KS 451
                       +  AL  +      E  D     ++   +L  GD +++  K 
Sbjct: 419 RSEDPATIRAAVMVGALENAAGKSVIEVGDRAEAILRGVDALGPGDALLIAGKG 472


>gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132]
 gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans ND132]
          Length = 507

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 163/459 (35%), Gaps = 50/459 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVF 86
           +  DSR I   E F A+ G    G D+I +A+  GA  +V      D+VA +        
Sbjct: 33  VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VD+   AL +LA A    +     ++AITG+ GKTTT  ++   L+S       +G+ N
Sbjct: 93  YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTVN 152

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                 +  A +                  DVD  + E+    L + R     +    AV
Sbjct: 153 YRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYR--VAGLDFDAAV 210

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSH-----AL 242
            T +   HL     +E    AKA++F    +      LNYDD +   L A+        +
Sbjct: 211 FTNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIGYGI 270

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G  ++           Q R      +   +E   +GK+  V    +G   A N+L    +
Sbjct: 271 GDASLVRQEVGDKPLVQGRILSMTGQGMEIETSWKGKTWVVRSPLVGSFNALNLLAAQAV 330

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  +     + LS F    GR +R     N   F      Y   P ++      L+ 
Sbjct: 331 GLQLGLNCKDM-RRLSTFPGVPGRLERVMNDKNLDIFV----DYAHTPDALDNVQRTLAA 385

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD-- 416
           +      R I V G     G+  ++    +A   + Y    V  S         A+ D  
Sbjct: 386 LD---FKRLITVFGC---GGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDDA 439

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L  +  V  +           + +  GD +++  K 
Sbjct: 440 RPGLAGAKRVMENPDRTEAIKMAVAEMEPGDALLIAGKG 478


>gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
 gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
          Length = 494

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 160/455 (35%), Gaps = 42/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              + GI++DSR +     F A+ G    G  F   A+  GA  ++ +      +  L  
Sbjct: 21  DPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVAELLR 80

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++ +  V+D   AL   +         T++A+TG+ GKT+    +      +      
Sbjct: 81  DSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVRQIWIELGHKAVN 140

Query: 140 IGS----------YNNHIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +G+           N+    P+TL                +  S  G  +     V    
Sbjct: 141 LGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLDQRRLDGVHLAA 200

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T     HL      E   +AKA +F   L + G   +N DD     ++A + A G +
Sbjct: 201 AGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGPEMRAIAAARG-Q 259

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G+    D  L   +  +    M      K  +   + IG   A+N+L+  G+V  
Sbjct: 260 EVISVGRGAG-DLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAENILLACGLVIA 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D     + L       G   R + A  +     +   Y   P ++  AI  L    P
Sbjct: 319 SGEDPQAVFETLPHLQTVRG---RMQLAATRDNGATVFVDYAHTPDAVATAIKALR---P 372

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           H  GR +A++G     G+   +    + +  +  N   V ++  +           A+K 
Sbjct: 373 HVLGRLVAIVGA---GGDRDAAKRPLMGQ-AAQENADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             P ++ V          L    +L  GD +++  
Sbjct: 429 GAPGALEVG---DRAEAILRGVDALGAGDALLICG 460


>gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 494

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/487 (18%), Positives = 168/487 (34%), Gaps = 59/487 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D++  +    +       +  I+ DSR++ P   F A+ G   DGH++I  AV  
Sbjct: 1   MKTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYIDKAVAA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  V+V+  +        + V  V D   A+            ++  ++ +TG+ GKTT
Sbjct: 61  GAVAVIVSKPVTVPND---VCVITVSDTRQAMMACVPYFFDYPANRMRMVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIF 165
           T  M+   L +       IG+ +  I                +   L +M   +V++ + 
Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVQENVEYCVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L   R     V    AV T +   HL      E   +AK ++FE +      + 
Sbjct: 178 EVSSHALALGR--VSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEKD 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DDS+   +  K+ A       ++                ++ S   V  +G+
Sbjct: 236 NKGAVINIDDSYGHRVMEKTTA----PTITYSTLGKGTLNASDVHMSTKNSQYTVNYKGE 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  V  +  G     N L  +G        ++    AL  F    GR +       Q F 
Sbjct: 292 SYPVSMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELIE--EGQDFA 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P  ++  +     I  +   R I V G     G+   +    +  + + Y
Sbjct: 350 VVVD--YAHTPDGLQNILETAKAIKEN---RIIIVFGC---GGDRDATKRPIMGRIAAEY 401

Query: 400 NISHVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
               ++++  +                +K+AL                         GD+
Sbjct: 402 G-DKIYVTSDNPRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDI 460

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 461 VIIAGKG 467


>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 496

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 94/453 (20%), Positives = 162/453 (35%), Gaps = 41/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88
           +  DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+
Sbjct: 26  LHSDSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQWNPEWNVPNQGI 85

Query: 89  DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            D+      L A     V+  L S   I  +TG+ GKT+  + L  A   +    A IG+
Sbjct: 86  KDLKHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIGT 145

Query: 143 YNNHIGVPL--TLARMPVDVDFGIFE------------LGMSHLGEIRFLTHLVRPHIAV 188
             N     L  T    P  V+                 + +S  G  +   + V    AV
Sbjct: 146 VGNGFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQTAV 205

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI 247
            T +   HL     +E   + K+ +F          +N DD +   L  +  A      +
Sbjct: 206 FTNLTRDHLDYHGTMEAYGAIKSRLF-YWRGLKHAVINSDDPYGAELIGRLKADRPDLAV 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS+G  + AD ++  +   S+   + +        V    +G   AQN+   +G++    
Sbjct: 265 YSYGFGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVLCADG 324

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  + AL    P  G   R  C +  G   ++ + Y   P +++ A++ L +I P G
Sbjct: 325 HPLDKVLAALEKIRPATG---RMDCIIESGKPLVVVD-YAHTPDALEKALATLQEIKPQG 380

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
                 V G     G         L    ++     V ++  +         + D LP  
Sbjct: 381 AA-LWCVFGC----GGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAV 435

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E        F   +    D++++  K 
Sbjct: 436 PAPECVEADRKAAIGFAVKNAASDDIILIAGKG 468


>gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 166/455 (36%), Gaps = 41/455 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--- 81
             V G+++DSR +     F  + G    G +FI +A++ GAG ++ + +       +   
Sbjct: 20  RPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDG 79

Query: 82  -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             + +   +D   A +  A        AT++ +TG+ GKT+           +    A I
Sbjct: 80  AEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANI 139

Query: 141 GSYNNHIGVPLTLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPH 185
           G+          LA    D               +     E     L + R     VR  
Sbjct: 140 GTTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRL--DGVRLV 197

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T  +  HL      E   +AKA +F   L   G   +N DD     + A +H  G 
Sbjct: 198 AAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGA 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + + G  K+A  +L   +  ++   M    +G + +   + +G   A N+L+ +G+V 
Sbjct: 258 E-LLTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVM 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A V   +  L       GR +  + A  +   T+  + Y   P ++K A+  L    
Sbjct: 317 ATGAQVGDLVPLLPRLATVRGRMQ--KVARRENGATVFVD-YAHTPDALKTALRALR--- 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
           PH  GR + V G     G    S    L    +      V+++  +  +   AL R+   
Sbjct: 371 PHVLGRLVVVFG----AGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVR 426

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           L    +L  GDV+++  K 
Sbjct: 427 AGCPEATDVPDRAEAILRGVDALEPGDVLLIAGKG 461


>gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 171/461 (37%), Gaps = 53/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A++KGA ++V +  +      +++
Sbjct: 22  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNV 76

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 77  PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 136

Query: 142 SYNNHI-----------GVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187
           +    I              +T  R    +     E   + +S +  +      +   IA
Sbjct: 137 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSH 240
           V T +   HL     + +   AKA +F  L              LN DD      +  + 
Sbjct: 197 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + +FG   +A    +  +  S  +  ++ + G    V    IG     NML   
Sbjct: 257 A----HVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAF 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     D  IK+L      +G   R++   +    ++I + Y+  P  +  A+  +
Sbjct: 313 AAAYASGIPEDQIIKSLEKVTGVKG---RFQSVPSHTGVSVIVD-YSHTPDGLLNALETI 368

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVL 412
              +         V+G     G+  ++    +A++   ++   ++ S           + 
Sbjct: 369 QDFATKD---IYCVVGC---GGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILN 422

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +P +    Y +    +   I+++   GDVV++  K 
Sbjct: 423 DMVAGVPNADVPVYEDRHVAIAKAIEAA-QPGDVVLIAGKG 462


>gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
 gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
          Length = 493

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 176/475 (37%), Gaps = 52/475 (10%)

Query: 12  QAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           QA+   S+G+  +G     + GIS+DSR + P   F A+ G    G +FI +A+  GA  
Sbjct: 4   QAVPLSSLGLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVA 63

Query: 68  VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+ + +       ++    + +   D    AL++ A         T+IA+TG+ GKT+  
Sbjct: 64  VLTDAEGAKLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVS 123

Query: 124 EMLTIA----------LSSIKKTYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELG 168
             +             L +     A      +    P+TL R   +           E  
Sbjct: 124 TFVRQIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEAS 183

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
              L + R     V    A  T     HL      +    AKA +F   L + GT  +N 
Sbjct: 184 SHGLDQRRL--DGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINI 241

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A + A G + + + G+    D  L   +  +    +    +GK+ +   + 
Sbjct: 242 DDPKGVDMVAIARARGCE-VITVGRD-GGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNL 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L+  G+V    AD       L       GR +      N G   +    Y 
Sbjct: 300 IGGFQADNVLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFV---DYA 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++  A+     + PH  GR +A++G     G+  ++    + +  +  +   V+++
Sbjct: 357 HTPDAIATALQA---MRPHVMGRLVAIVGA---GGDRDRAKRPLMGQ-AAAAHADLVFVT 409

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +           A+ +  P +  V          L    ++  GD +++  K 
Sbjct: 410 DDNPRSEDPATIRAAVMEGAPEATEVG---DRAEAILRGIDAIGTGDALLIAGKG 461


>gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 297

 Score =  212 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 127/292 (43%), Gaps = 10/292 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                 I  F     A           + S + +   G  ++V  + +G H 
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHN 287


>gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
          Length = 298

 Score =  212 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 127/292 (43%), Gaps = 10/292 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                 I  F     A           + S + +   G  ++V  + +G H 
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHN 287


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 171/464 (36%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
             +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD       AK 
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGREWLAKL 260

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A+ + T  SF  S++   +        +   +  +    + E+    IG     N+L 
Sbjct: 261 PDAVAVSTDASFS-SEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLT 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +L  D+   I+   +     GR +      N     L+   Y   P +++ A+ 
Sbjct: 320 ALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
                  H EG    + G   +     +     +AE L+      V  +  +        
Sbjct: 380 A---ARLHTEGELYCIFGCGGDRDAGKRPMMAVIAEELA----DKVIATDDNPRTEDNAK 432

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  + +   +   V      +           + DV+++  K 
Sbjct: 433 IMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
 gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
          Length = 491

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 153/460 (33%), Gaps = 52/460 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGSLSI 83
           V+ ++ +S+ +     FFAIKG   DGH FI  A++ GA  VV+         S     +
Sbjct: 20  VSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYPDV 79

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                D++     ++          K  +I +TG+ GKTT   +L   L    K    IG
Sbjct: 80  TFVISDNIRKTQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGIIG 139

Query: 142 SYNNHIGVPL--------------TLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +      +               L     D   D+ + E+    + + R   +    H
Sbjct: 140 TIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYR--VYGTVFH 197

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHAL 242
             + T +   HL     +E     K   F+ ++     G I  N DD +   +       
Sbjct: 198 GGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFK-- 255

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S+G+ KNA F++  +    +      +  G    V     G     N+      
Sbjct: 256 SCMNTISYGRDKNAQFRVSDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFNIYNIAAAFSY 315

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +     D+D    A     P  GR +            L+   Y   P +++  +  L+Q
Sbjct: 316 LLRSGFDIDFLHHATEKLKPIRGRFETVEKDF------LVVNDYAHTPDAIEKILMSLNQ 369

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413
           I  +   R I V G   +     +     +AE L+      + L+  +  +         
Sbjct: 370 IKKN---RIIIVFGAGGDRDRGKRPLMGKIAEELA----DIIILTSDNPRSEDPSRIIED 422

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +K  +     ++     +             D+V++  K 
Sbjct: 423 IKSGMKMEKEIYEIIDREEAIKKAIEIARKDDIVLIAGKG 462


>gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
 gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
          Length = 494

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 167/480 (34%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H+F  + +++G
Sbjct: 1   MNASALFEKIRVKNVIGTLDKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             +VVVN ++        +    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNRELELEGE---VTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             M+ +    + K  A +G+    I    T                   +  + +    E
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    E L K   
Sbjct: 178 VSSHGLSLGRL--RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + LN DD F   L + +       ++++G    A F  +   +  +    ++        
Sbjct: 236 VVLNNDDEFSHYLASVTPY----EVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYR 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N++  +  V    A ++  I A++   P EG   R           LI
Sbjct: 292 VKSPYVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEG---RLEVLDPSLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y      M   I     + P  + + I ++G M   GE   +   ++  V       
Sbjct: 349 ID-YAHTADGMNKLIDA---VKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVA--CRAD 399

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V  +  +            L        +V + +  +G+   I      GD VV+  K 
Sbjct: 400 YVIFTPDNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIRHAI-EVAEPGDTVVLASKG 458


>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
          Length = 496

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 168/482 (34%), Gaps = 50/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   ++++  ++   +       + GI+ DSR++     F  I+G   DGH++I  A+  
Sbjct: 1   MKNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  ++V  ++        + V   DD    L +++ A       +  ++ +TG+ GKTT
Sbjct: 61  GATALLVEKEVEV---DSEVTVIKTDDTRLGLAEVSAAFYDYPSRELKVVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIF 165
              ++   L         IG+  N +                +   LA+M    V   + 
Sbjct: 118 NTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVTHVVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTI 223
           E+    L   R     +   +A+ T I   HL       E  +AK ++F  L+ +   T 
Sbjct: 178 EVSSHALDLNR--VAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKTA 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD   +     +++     + ++G  K+A+ + +            ++     ME+
Sbjct: 236 IINIDDPHSDEFLEAANS----KVLTYGIEKDANLKAKDITISPTGVEFGLESTIGEMEL 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  +G    L  D+D     L       GR +    A + G      
Sbjct: 292 DLNITGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEAQDFGVIV--- 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
             Y   P S++  +          EGR I V G   +  +  +     +A  L  + +  
Sbjct: 349 -DYAHTPDSLRNILETAHDF---VEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFAVVT 404

Query: 402 ---------SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
                    + +       +  KD +          E       +   S    D+V +  
Sbjct: 405 SDNPRSEEPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVFIVG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 303

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 131/308 (42%), Gaps = 10/308 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  F     A           + S + +   G  ++V  + +G H A+N L   
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAAT 295

Query: 301 GIVSILTA 308
                   
Sbjct: 296 AAALAAGV 303


>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium johnsoniae UW101]
 gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
           johnsoniae UW101]
          Length = 487

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 166/478 (34%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +   S+       +  I  DSR +   + F AI+G   DGHD+I  A+Q 
Sbjct: 1   MKVLKDILYKVTIESVTGSTDIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDYIEKAIQL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  ++   D +       +    V D   AL  +A        +K  ++ +TG+ GKTT
Sbjct: 61  GAKAIIC--DKLPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARM-PVDVDFGIF 165
              +L             + +                 + + +   L  M    V     
Sbjct: 119 IASLLFQLFEKAGFKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNEMAEAGVTHCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +     + T ++  HL       E    K   F+ L KT  +  
Sbjct: 179 EVSSHGIHQKR--TEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDSLPKTAFVLS 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A       ++     AD++ +  +       ++V       EV  
Sbjct: 237 NIDDKNGSVMLQNTAAKK----LTYALKSYADYRAQILESQLSGLLLKVN----DNEVWV 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L   G    L  D   A++ LS      G   R++  ++    T + + 
Sbjct: 289 KLIGTFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSG---RFQYIVSDNGITAVVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  +  ++ I    E + I V+G     G   ++    +A++ +  +   + 
Sbjct: 345 YAHTPDALENVLKTINDIRTKNE-QLITVVGC---GGNRDKTKRPIMAKIATDLSDKAIL 400

Query: 406 LSG----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            S          + D + + +  H  +                      D++++  K 
Sbjct: 401 TSDNPRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKG 458


>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. NATL1A]
          Length = 509

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 171/486 (35%), Gaps = 53/486 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA- 65
            H LL+AI       +    +  +S DSR I   + F  + G   DG  F   A+++GA 
Sbjct: 5   LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGAC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTT 122
             ++     + +  +   PV  + + +             +  S+  +I ITG+ GKTTT
Sbjct: 65  AAIISKKASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++    +S+    A  G+  N        ++                    V++G  E
Sbjct: 125 SFLIEFLTTSLGHPSALFGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVEYGAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTG-TI 223
           +    L + R        + A+ T ++  HL     +E    AKA +F    ++  G   
Sbjct: 185 VSSHALSQNR--VAGCDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDGPRS 242

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA------DFQLRKWKQCSEQSWMEVQLQ 277
            +N DD +  +L  + +    K  ++    +N+      D  +   +   +    ++   
Sbjct: 243 VINIDDKWGSILAKELN----KKCWTCSLKENSQIREKPDLYISNLQIMQDGYMGKLHTP 298

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-- 335
                 +   IG     NML  +GI+      ++  ++AL+ F    GR +         
Sbjct: 299 FGVGNFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKV 358

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +  + L+   Y   P  ++ A+     ++   + R I V G     G+  +     + EV
Sbjct: 359 KDGYPLVIVDYAHTPDGLQNALIASRSLT---KKRLICVFGC---GGDRDKGKRSKMGEV 412

Query: 396 LSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + +    V  S           +  ++  +     +           F  +     DVV
Sbjct: 413 AAKFADYIVVTSDNPRQEDPIEIIKDIQKGITIDSEISVEPERSIAIQFAIAKAKKNDVV 472

Query: 448 VV--KS 451
           ++  K 
Sbjct: 473 LIAGKG 478


>gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 505

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 179/484 (36%), Gaps = 52/484 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L     L Q +    +   P   + GI   S S+ P + F  + G   DGHD++  A
Sbjct: 1   MNVLK-LSQLTQDLLVKRMIGNPDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
           +Q+G   ++    +    GS  IP   V D   A+  LA A      +   +I +TG+ G
Sbjct: 60  IQRGCAALMAEKKVERLEGS--IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDF 162
           KTTT  M+             IG+ +                 + +   L RM   +  +
Sbjct: 118 KTTTTHMIEHIFHHTGHKTGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKY 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-- 220
            + E+    L   R          AV T ++  HL   S +++    K+ +F  L  +  
Sbjct: 178 AVLEVSSHALRMGR--VRGCNFKTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYG 235

Query: 221 ---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD F + L AK+ A     +  +G  + +D +  + +   E +   +   
Sbjct: 236 SLPKVAILNADDPFSKKLAAKTSA----QVIHYGIDQPSDVRASEIRMNQESTSFWLDTY 291

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S  +  + +G     N L  + +  +    ++   + L  F   +GR +       Q 
Sbjct: 292 LGSTWIHLNVVGIFNVYNALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIET--GQD 349

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y  NP  ++  IS    I+   +G+ IA++G  CE G+  ++    +A   +
Sbjct: 350 FQVIVD--YAHNPDGLEKVISTARAIT---KGKIIALIG--CE-GDRDKAKRPIMAAKAA 401

Query: 398 LYNISHVWLSG----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVV 447
           +     +  S         ++ + + R +            +              GD V
Sbjct: 402 ILADKAILTSDNPRSERSESILEDMVRGLDNAGLSRCETITSRKDAIHRALELAKTGDCV 461

Query: 448 VVKS 451
           ++  
Sbjct: 462 LILG 465


>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 483

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 168/473 (35%), Gaps = 48/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LLQ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D   L A               +I ITG+ GKTT   
Sbjct: 63  AVLSSLYNPF----LSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELG 168
           ++   +    +    IG+  +                I +    A M   ++   + E+ 
Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +G              V+T I   HL     +EE  +AK + F  L + G   +N D
Sbjct: 179 S--IGMALGRVRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +       S A  +    S+   + AD++  + K  S  S  ++  QG+        I
Sbjct: 237 CEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLI 292

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+L +L +V   L  D    ++ +      +GR          G F +  + Y 
Sbjct: 293 GEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILL----GPFPVYID-YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
             P ++     +L Q+ P  +GR I V G   +   + +     ++E    Y  S V   
Sbjct: 348 HTPDALDNVCRILLQLLPK-DGRLIIVFGCGGDRDRVKRPLMAKVSEH---YGFSFVTSD 403

Query: 407 ------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +        +V  S+    +   I S   D D+V+V  K 
Sbjct: 404 NPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAI-SMASDKDIVLVAGKG 455


>gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
 gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
          Length = 505

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 153/458 (33%), Gaps = 50/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             FV  I  DSR   P + F  + G       ++  A+QKGA  ++        +  L +
Sbjct: 31  DVFVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTER----PLTGLQV 86

Query: 84  PVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V DV    AL    +A R         +TG+ GKTT   ++   + S  +     G
Sbjct: 87  PQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTGLSG 146

Query: 142 SYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   H  +    A +                       + E+    L + R     +   
Sbjct: 147 TVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEVSSHALDQNRL--AGIDLS 204

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +   H          A+ KA + + ++  GT+ LN+DD       A+  +   +
Sbjct: 205 VGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNWDDPTCRSFAAEVKSS--Q 262

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ ++     AD   +  ++ +  +  E+   G S+ V    IG H   N L        
Sbjct: 263 TLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAACLS 322

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +      +       GR +R  C   Q F  LID  Y     ++     V+     
Sbjct: 323 LGVSLSEIALGIERLVTVPGRMERVTC--GQSFTVLID--YAHTDDALS---HVIRSAKR 375

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKD 416
               R   V G   +     +S    L    S      V ++  +         + A+ +
Sbjct: 376 LCSQRVFCVFGAGGDRDTGKRSL---LGMAASE--ADRVIITSDNPRSEDPAQIIRAVAE 430

Query: 417 A-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L + +             +  S    GD+V++  K 
Sbjct: 431 GCLNKGVSPEQIIDRREAIHYALSEARRGDLVLIAGKG 468


>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70]
 gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70s]
 gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis Sweden2]
 gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/150]
 gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/11023]
          Length = 483

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 168/473 (35%), Gaps = 48/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D   L A               +I ITG+ GKTT   
Sbjct: 63  AVLSSLYNPF----LSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELG 168
           ++   +    +    IG+  +                I +    A M   ++   + E+ 
Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +G              V+T I   HL     +EE  +AK + F  L + G   +N D
Sbjct: 179 S--IGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +       S A  +    S+   + AD++  + K  S  S  ++  QGK        I
Sbjct: 237 CEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFLCETSLI 292

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+L +L +V   L  D    ++ +      +GR          G F +  + Y 
Sbjct: 293 GEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILL----GPFPVYID-YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
             P ++     +L Q+ P  +GR I V G   +   + +     ++E    Y  S V   
Sbjct: 348 HTPDALDNVCRILLQLLPK-DGRLIIVFGCGGDRDRVKRPLMAKVSEH---YGFSFVTSD 403

Query: 407 ------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +        +V  S+    +   I S   D D+V+V  K 
Sbjct: 404 NPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAI-SMASDKDIVLVAGKG 455


>gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 163/482 (33%), Gaps = 50/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-VN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    V  G++ID+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLIAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+            + V  V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDQQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK-TYACIGSYNNHIGVPL-----------------TLARMPVDVD 161
           T+   M    L   ++     IG+  + IG  +                  L     D  
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G   L  + +G +          + V T +   HL +   +E    AK  +F+GL +  
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCR-- 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++     L    + ++    +AD++       +  S   +   G+  
Sbjct: 239 CAVVNADDPVGAGIRK----LMPGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R + +   G  ++
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQIS---GGTSV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +P S+   ++ +   +    GR I V G     G+   +   D+  +   ++ 
Sbjct: 352 IVD-YAHSPDSLNKVLTTIRGFA---RGRVITVFGC---GGDRDTTKRADMGAIAGTHSD 404

Query: 402 SHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V  S         G      K  +                    +     D+V++  K
Sbjct: 405 LCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAGK 464

Query: 451 SS 452
            S
Sbjct: 465 GS 466


>gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 487

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 165/477 (34%), Gaps = 51/477 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  +    I       +  I +DSR       F A+ G   DGH +I  A+  G+ 
Sbjct: 4   LQELLNKVSVQQIIGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++   +      +  +    V +V  AL  +A        +K  ++A+TG+ GKT+T  
Sbjct: 64  AIIC--EKYPEHLATHVTYIQVSNVTQALGTIASNFYKNPSTKLKLVAVTGTSGKTSTVH 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169
           +L      +  +   + + +N I                +   LA+M        F    
Sbjct: 122 LLYRLFRQLGYSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVTAGCQFCFMEAS 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH      L  L     A+   I+  HL      +    AK ++F+ L     +  N DD
Sbjct: 182 SHAIVQNRLAGL-ELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDELTANAFVLYNIDD 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +++   + A    T YS    + ADF  +      +   +E+++ G+++      +G
Sbjct: 241 KRGKIMIQNTRA----TTYSMAIQRPADFTAQVLANTWQG--LELRIGGQNV--WFQLLG 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L       +L       + ALS   P  GR +            +ID  Y   
Sbjct: 293 TFNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQHIHTPKKPD--VIID--YAHK 348

Query: 350 PASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P +++  +  + QI      +G+ I ++G         +     +A  LS      + L+
Sbjct: 349 PEALEKILLSIQQIRESAKQQGKIITIIGCGGNRDTQKRPMMARIAYKLS----DQLILT 404

Query: 408 G-----FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     A+ + + + +                            D++++  K 
Sbjct: 405 SDNPRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKG 461


>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
 gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 489

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/482 (19%), Positives = 173/482 (35%), Gaps = 56/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR + P   FF +KG   DGHDF   AV++G
Sbjct: 1   MKLQTLLSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +  ++  +      V D   A+  L  A   +   +  +I +TG+ GKTTT
Sbjct: 61  AVAIVAERPLSVNVPVV-----VVPDSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFE 166
             ++        K    IG+    IG     A                 +   V+F   E
Sbjct: 116 THIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R   H     +AV T +   HL     +EE  +AK  +F  L       + 
Sbjct: 176 VSSHALHQGR--VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN+DD   +  K  + A     I ++G  + +D    + +        ++     +
Sbjct: 234 KFAVLNHDDPVSQYYKHMTAA----PIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGT 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +    +G     N+L            + T  +AL+   P  G   R+        FT
Sbjct: 290 MAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPG---RFETVDEGQNFT 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P S++ A+  + Q +   +     V+G     G+  ++    +A+    Y 
Sbjct: 347 VIVD-YAHTPDSVENALKTVRQFA---KRNVYVVIGC---GGDRDRTKRPLMAQAAVRYA 399

Query: 401 ISHVWLSG--------FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV-- 449
              V+ S           +  ++  +      +      +    +      +GDVV++  
Sbjct: 400 DVAVFTSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQAQEGDVVLIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
 gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
          Length = 493

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 180/484 (37%), Gaps = 55/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL         +     ++ +++DSR ++P   F AIKG   DG  FI  A+++
Sbjct: 1   MMQLSELL----LSWCELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQ 56

Query: 64  GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           GA  V+ + D     G++ +     V  +D +   L+ +A A     K    ++ ITG+ 
Sbjct: 57  GAVAVIADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNN---------------HIGVPLTLARMPVDVDF 162
           GKTT  +++    + + +  A +G+  N                I +  TL  +  ++  
Sbjct: 117 GKTTISQIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL-ENIGA 175

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  L +S  G ++   + +    AV T ++  HL     +E  A AK  +F       +
Sbjct: 176 KLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHS 235

Query: 223 IFLNYDDSFF-ELLKAKSHALGI---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             +N DD    + LK   HA+ +   +   SF   K            +E   + V    
Sbjct: 236 -IINADDQVGCQWLKEMPHAVAVSLNEENISFHSGKK--VFATSVVYSTEGIQLSVSSDW 292

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++      IG   A N+L+    +  L  D+    +  S  +   GR + +  A N+  
Sbjct: 293 GNVAFSVPLIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELF-TADNKAK 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +    Y   P ++  A+  L     H EG+   + G   +     +     +AE    
Sbjct: 352 VVV---DYAHTPDALDKALQALR---VHCEGKLWCIFGCGGDRDTGKRPMMASIAE---- 401

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + LS  +  +         +   L  S   H          F  S   + D++++
Sbjct: 402 QQADVIILSDDNPRSEEPSLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILL 461

Query: 450 --KS 451
             K 
Sbjct: 462 AGKG 465


>gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 171/477 (35%), Gaps = 51/477 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL+ ++   +       +N +  DSR   P + F A+KG   DGH FI   +Q G 
Sbjct: 8   TLTSLLRGLKPLQVLGSTDIAINEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGI 67

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
             +VV  + +       + +  V +   AL  LA A       + T++ +TG+ GKTTT 
Sbjct: 68  SALVV--ETIPENVPDQVTIVQVANSAQALGFLASAFYEHPSHQLTLVGVTGTNGKTTTV 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARM-PVDVDFGIFEL 167
            +L    S +      + +  N I   +                LA+M     ++   E+
Sbjct: 126 TLLYDLFSGLGYKCGLLSTVENRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEV 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               + + R     +    A+ T I   HL      +    AK   F+ L K     +N 
Sbjct: 186 SSHAVDQGRI--AGLDFKGAIFTNITHDHLDYHLTFDNYIRAKKSFFDQLSKRAFALVNI 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    ++  +   + A+F+ R  +         + L   + +     
Sbjct: 244 DDKRGMVMTQNTAA----SVNRYSLRQMAEFRARIIENSLTG----LHLDIDNQDFYGRL 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L       +L  D    +  LS     EG   R+   ++Q         Y 
Sbjct: 296 IGEFNAYNLLAVYATAVLLEQDKVETLTQLSRLKAAEG---RFDYVMDQKRQVTAIVDYA 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +  +    + + + V+G     G+  ++    +A+V   Y+   V L+
Sbjct: 353 HTPDALEKVLETIQALR-KADAKVLTVVGC---GGDRDRTKRPTMAKVACQYS-DQVILT 407

Query: 408 GFH---------VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +  ++  +P      V                   GDVV+V  K 
Sbjct: 408 SDNPRSEEPEAIIREMEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKG 464


>gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
 gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
          Length = 424

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 173/448 (38%), Gaps = 64/448 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P  AF A+ G    G+ F+  A+  GA  V+ + D   +          V 
Sbjct: 23  LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAPRA--------VRVP 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL   A A R      ++ ITGSVGKTT K     AL +          +N    +
Sbjct: 75  DAQVALFAWARAERA-HNPLVVGITGSVGKTTAKAYAAAALDAHFMPV-----FNTMPAI 128

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L          + E+G+  LGE+R L  LVRP + V+T+I  AHL  F  +E IA  
Sbjct: 129 ACFLIEFGRSARPLVVEMGIDRLGEMRELVDLVRPDVGVVTSIGEAHLEAFGTVETIARE 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  I E                  +    S     +  Y FG+   A F     +  +E 
Sbjct: 189 KGVILEA-------------PRGLVGVQASPFYPGRDTYGFGE---ATFAGDALQVSAEA 232

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +          + V         A+  ++ L +  +    V TA + L+      GR + 
Sbjct: 233 AAFVY----GEVPVALPHASKVQAEAAVLGLALAEVAGVPVGTAAERLAGVSVPGGRYRV 288

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                  G FT+ID++YNA+P S++AA            GR ++VLG M E+G+  +  H
Sbjct: 289 L-----PGRFTVIDDAYNASPLSVRAA----LDALAALPGRHVSVLGRMLELGDTERELH 339

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +            +  G     L +        H   T+  L   + + + DGDVV+V
Sbjct: 340 AQVGAYARQR-ADVTFGVGAFASELGE------RAH--ATVPDLLADLLAEVRDGDVVLV 390

Query: 450 KSSNSC------------GFYRLINLLL 465
           K+S               G   +++ LL
Sbjct: 391 KASRGISWAPQRRAQEGVGLDTVVDALL 418


>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
 gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
          Length = 491

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 156/454 (34%), Gaps = 44/454 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  ++ D+R + P   FF + G   DGHDF   AV +GA  +VV   +   +  L +
Sbjct: 22  DVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPLGLGVPELRV 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                     A           ++   + +TG+ GKTTT  ++   L +  +    +G+ 
Sbjct: 82  ASVR---AAMARAAANFNGDPTARLQTVGVTGTNGKTTTAFLVRGLLEAAGRQTGLLGTV 138

Query: 144 N---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                             I +   L  M    D        SH  E+      VR   A+
Sbjct: 139 KAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHR-ADAVRFAAAI 197

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E+   AK  +FE     G   +N DD +   L  +  A G   + 
Sbjct: 198 FTNLTQDHLDFHPTMEDYFLAKRRLFETGP--GVAVVNVDDPYGRRLAEELRADGAALV- 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +     +AD++  +       S    Q     + +     G    QN+L  +  V  L  
Sbjct: 255 TIALDHDADYRATELTTGLTGSAFTAQTPQGPIALRTPLPGRFNVQNVLGAVAAVRALGV 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++    AL       GR +       QGF  L+D  Y   P S+   +     ++   E
Sbjct: 315 PLEQIAAALPQAGRVPGRFEP--VDEGQGFAVLVD--YAHTPDSLDNVLQAARGLT---E 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419
            + + V G   +     +     +A  L+       +++  +  +         + +   
Sbjct: 368 RQVLTVFGCGGDRDRTKRPLMGGIAARLA----DEAYVTSDNPRSEDPEQILRDVVEGTG 423

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              HVH             ++  DGDV+V+  K 
Sbjct: 424 TGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKG 457


>gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 488

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 160/458 (34%), Gaps = 48/458 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLSI 83
           N +++DSRS+     F AIKG   DG  FI  A+  GA  V+   D             I
Sbjct: 20  NRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQNQI 79

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV     +   L+ +            T++ +TG+ GKTT  ++L      + +  A +G
Sbjct: 80  PVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPAVMG 139

Query: 142 SYNNHIGVPLTLARMPVD----------------VDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  N +   L  A                      DF   E+     G ++     +   
Sbjct: 140 TIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSH--GLVQHRIEALHFA 197

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGI 244
             + T ++  HL     +E  ASAK  +F  L       +N DD    + L+    A+ +
Sbjct: 198 AGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQK-IINADDEIGVQWLRELPDAVAV 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++  ++    ++      S+ + +          +    IG     N+++ L  + 
Sbjct: 257 SCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLATLL 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K +S      GR +    A      T+I + Y   P +++ A+       
Sbjct: 317 SLGYSLDELLKTVSQLTGVCGRMEMLHAAHKP---TVIVD-YAHTPDALEKALQAARA-- 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
            H  GR   V G   +     +     +AE  +     +V ++  +            + 
Sbjct: 371 -HCTGRLWCVFGCGGDRDRGKRPLMAQVAERFA----DYVIVTDDNPRTEDRHQIVQDIV 425

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               R   V+     +        S V+ DV+++  K 
Sbjct: 426 AGFKRPESVNIVYDREQAIRTAVQSAVENDVILIAGKG 463


>gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
 gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
          Length = 488

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 174/478 (36%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +  + I       V  +  DSR  A   AF A+KG   DGH FI  A+  
Sbjct: 1   MKNLKDILYKVSANKIFGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLFIDKAINL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA +VV   +         +    V D   AL            SK  +I +TG+ GKTT
Sbjct: 61  GAIVVVC--EDFPKEQKEGVTYIQVSDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARM-PVDVDFGIF 165
              +L             + +                 + + +   L +M    VDF   
Sbjct: 119 VASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +     V T ++  HL          + K   F+ L K+  +  
Sbjct: 179 EVSSHGIHQKR--TEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDTLPKSAFVLA 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     +   S A+      ++     AD++++  ++    + + +       EV  
Sbjct: 237 NIDDKNGRFMLQNSKAIKK----TYALKTAADYKVKILEKQLSGTLIALD----GTEVWI 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG     N+   +    +L  +    +  LS      G   R+   ++Q   T I + 
Sbjct: 289 KLIGVFNIYNVTAVIATAELLGLEKLEILTILSALESVSG---RFEYVISQDGVTAIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  +  ++ I    E + I VLG     G+  ++    +A + S  +   ++
Sbjct: 345 YAHTPDALKNVLETINDIKIGAE-KVITVLGC---GGDRDKTKRPKMAHIASQLSNQVIF 400

Query: 406 LSG----FHVLALKDALPRSIHVH-YSETMDGL--FLFIQSSLV---DGDVVVV--KS 451
            S      +   + + +   I +  Y +T+  L     I+++      GD++++  K 
Sbjct: 401 TSDNPRTENPQTILEDMEAGIALQNYKKTLTILDRKQAIRTACKFSEPGDILLIAGKG 458


>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
 gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
          Length = 498

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 189/480 (39%), Gaps = 47/480 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D++  I+  +I       VN IS DSR I   + F AIKG   DGH+FI   +++G
Sbjct: 1   MNILDIIDNIKIKTIYGKLPDSVNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     ++ + ++ V    ++    + +A      +    +A+TG+ GKT+   
Sbjct: 61  AALVIASRYENYNVENCAVLVVREHEIEKIASMIAKKINEGADIHTVAVTGTNGKTSIST 120

Query: 125 MLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--- 179
           ++   L ++ ++ A IG+  +  +   P+       DV     ++G      I+ L    
Sbjct: 121 LVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFEA 180

Query: 180 ----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----GLEKTGTIFL 225
                     + V   +A+ T +   HL     ++  A  K+ +F      L +     L
Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGVL 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSM 281
           N DDS+++++   S  L  + I    K + ADF     KQ  E    ++   ++    + 
Sbjct: 241 NKDDSYYKII---SKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGTF 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E   + IG  M  N+L  L  V +    V+  +  L       G   R     +     +
Sbjct: 298 ECTTNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYG---RMEILGDDLPIDI 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + +   P   +  +    +I    +G+R  ++  M    ++S+     + E++S    
Sbjct: 355 ISD-FAHTPDGYEKLLEATREIR---KGKRTLLVTGMGGGRDISKG--PLIGEIISE--A 406

Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVV--KS 451
            +V ++        V  L  ++ + +     E +         I      GDVV++  K 
Sbjct: 407 DYVVITTDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSKPGDVVILASKG 466


>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
 gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
          Length = 492

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 166/459 (36%), Gaps = 54/459 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR +     FFAIKG   DGHDFI  AV +GA  +V    +    G   + +  
Sbjct: 23  RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVEVPPG---VVLEV 79

Query: 88  VDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN- 144
           V +   AL   A         K  ++ +TG+ GKTTT  +L+       K    IG+   
Sbjct: 80  VPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIGTLYV 139

Query: 145 --------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                           + +   LARM  + ++  + E+    L         V   +AV 
Sbjct: 140 KLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLAL--ERVTGVAFDVAVF 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALGIK 245
           T +   HL     +E+    KA +F  L           +N DD + + L +    +   
Sbjct: 198 TNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCRGV--- 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + ++G  +  +     ++   E + +     G+ +EV     G     N L  L +   
Sbjct: 255 EVLTYGLKEG-EVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYNALAALAVAVG 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D A +ALS      GR +R      Q F  L+D  Y   P  +   +++L     
Sbjct: 314 EGMPLDLAARALSRVQAVPGRCER--IDEGQDFTVLVD--YAHTPDGL---LNILRTARE 366

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS 421
              GR I V G     G+   S    +  +   Y    V  S        +A+  A+ + 
Sbjct: 367 ISRGRVIVVFGC---GGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQG 423

Query: 422 I-------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            E  +       +    GD+V++  K 
Sbjct: 424 LAQVAPPSRYLLIEDREAAIKEAFARARPGDIVILAGKG 462


>gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15]
          Length = 485

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 166/459 (36%), Gaps = 47/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              ++G+  DSR +A  +AF A+ G       ++  A+  GA ++++      +     G
Sbjct: 12  DVTIHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQQAGECTEHHG 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +L +PV G+  ++G +           +  +I +TG+ GKT+  + +   L         
Sbjct: 72  ALIVPVAGLRSLVGRIADRFFEH-PSQRLRLIGVTGTNGKTSVCQYVAQLLKETGTPCGI 130

Query: 140 IGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+    +   L  A                    +    + E+    L + R     + 
Sbjct: 131 LGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGR--VDNLS 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T +   HL     +E   +AKA++F+  E+     +N+DD F   L  +     
Sbjct: 189 MTGAVFTNLTRDHLDYHGSMEAYGAAKAQLFQR-EELHFSVINFDDPFGRQLFEQLDGKC 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  YS  +++  +  LR+++   E    EV  +     V    +G   A N+L  +  V
Sbjct: 248 DRVRYSLHEAQT-ELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATV 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++   +A+    P  GR +R+   +      ++ + Y   P ++  A++ L   
Sbjct: 307 LTLGVPIERVQQAVGRLTPPPGRLERF---VGANGVRVVVD-YAHTPDALANALTALR-- 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
            PH  G  + V G     G+       ++A          V ++  +            +
Sbjct: 361 -PHVTGELVCVFGC---GGDRDAGKRPEMAREAERL-ADRVVVTDDNPRSEDPETIAEHI 415

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +  V               S    DVV++  K 
Sbjct: 416 LAGFTDAARVSVIHDRAEAIRSTIRSATPNDVVLIAGKG 454


>gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
          Length = 499

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 153/465 (32%), Gaps = 46/465 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73
           G +        ++ IS+DSR       F A+ G    G  FI  A+++GA  ++ +    
Sbjct: 18  GLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERGATAILTDAKGA 77

Query: 74  --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      V  V+D   AL   A         T++A+TG+ GKT+    +     
Sbjct: 78  EIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWC 137

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD---------------VDFGIFELGMSHLGEIR 176
            +      +G+          LA    +               V     E     L + R
Sbjct: 138 ELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAMEASSHGLDQGR 197

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V+   A  T     HL      E   +AKA +F   L + G   +N +D     +
Sbjct: 198 L--DGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVINMNDPRGAEM 255

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A + A G + + + G+    D  L   +       +      +  +   + IG   A+N
Sbjct: 256 RAIAAARG-QEVLTVGRGLG-DLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLIGGFQAEN 313

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+  G+      D +     L       G   R   A  +     +   Y   P ++  
Sbjct: 314 VLLACGLAIASGEDPEAVFATLPHLTTVRG---RMEHAATRENGASVFVDYAHTPDAVAT 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
           AI  L    PH  GR +A++G   +     +          +  N   V ++  +     
Sbjct: 371 AIKALR---PHVLGRLLAIVGAGGDRDAGKRPLMGQ----AAAENADLVIVTDDNPRTED 423

Query: 413 ------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 A+K   P ++ V          L     L  GD +++  
Sbjct: 424 PAAIRAAVKGGAPEALEVG---DRAEAILRGVDLLGPGDSLLICG 465


>gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei BCC215]
          Length = 300

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 10/291 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS +P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSASPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                 I  F     A           + S + +   G  ++V  + +G H
Sbjct: 239 G---NRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEH 286


>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 506

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/459 (21%), Positives = 161/459 (35%), Gaps = 50/459 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVF 86
           +  DSR I P E F A+ G H  G D+I  A+ KGA  VV      D+VA          
Sbjct: 33  VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAPASARDLVAPAVEKRALAV 92

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             D+   AL  LA A          ++ ITG+ GKTTT  ++   L++       +G+ N
Sbjct: 93  YHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVLGTVN 152

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                 +  A +                  DVD  + E+    L + R     +    AV
Sbjct: 153 YRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYR--VAGLDFDAAV 210

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSH-----AL 242
           +T +   HL     +E    AK  +F   L       +N++D +   L   +       +
Sbjct: 211 LTNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIGYGI 270

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G  ++ +         Q R      +   +E   +GKS  V    IG   A N+L    +
Sbjct: 271 GDSSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLLAAQAV 330

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  +     K + V     G   R    +N     +  + Y   P +++     L  
Sbjct: 331 GLQLGLN----CKDMCVLKDFPGVPGRLERVINDQGLDIFVD-YAHTPDALENVQHTLKS 385

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD-- 416
           +      R I V G     G+  ++    +A+ ++ Y    V  S         A+ D  
Sbjct: 386 LD---FKRLITVFGC---GGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMDDA 439

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L R+  V              + +  GDV+++  K 
Sbjct: 440 RPGLARAAVVLEHPDRQTAITMAVAGMQPGDVLLIAGKG 478


>gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. 1-1C]
          Length = 484

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 158/454 (34%), Gaps = 42/454 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GIS DSR + P   F A+KG   DG  ++  A+Q+GA +++  TD      +LSI
Sbjct: 18  SIEITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVII--TDNNFVFENLSI 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V D    L   A         T++A+TG+ GKT+    +      I    A IG+ 
Sbjct: 76  PVIHVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGTV 135

Query: 144 NN-----------HIGVPLTLARMPVD------VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                            P+ L R+  +      V    FE     L + R     V    
Sbjct: 136 GVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRI--DGVHLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T +   H+     IE    AK  +F   L +     +  DD + + +         +
Sbjct: 194 AAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVR-QAHR 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G++      L + +    +  +E ++            G     N LM  G+   
Sbjct: 253 QVLTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A  D   ++L       G   R     N      I   Y   P +++    +L  + P
Sbjct: 312 TNAPSDMVFRSLEKLQGAPG---RLELVGNTEDGAPIYVDYAHKPEALE---QMLLSVRP 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHV 424
             +GR + V G   +  +  ++    +A          V ++  +      + + + I  
Sbjct: 366 FTQGRLVLVFGCGGDRDQGKRALMGKIA----GNKADIVIVTDDNPRTEAPEKIRKDILQ 421

Query: 425 HYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
              E ++         +    L  GD ++V  K 
Sbjct: 422 AVPEAIEIADRGQAIEYAVELLKAGDTLIVAGKG 455


>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
 gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 155/414 (37%), Gaps = 37/414 (8%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            +  +LL   + +    +G + +  + GI  DSR ++  + F    G   DGH ++  A 
Sbjct: 244 MSLAELLDESKVVPVSVLGDL-EVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEAD 302

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           ++GA  VV + ++          +  V+D    L  LA A          +I ITG+ GK
Sbjct: 303 KRGAVAVVASKEVDIEETLGCKALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGK 362

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------------PLTLARMPVDVDF 162
           TTT  ++     ++      + +   +I                    L    +    + 
Sbjct: 363 TTTANLVKGMYEAMGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEA 422

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKT 220
            + E     L   R     V   IAV T +   HL      EE  +AKA++F  +   + 
Sbjct: 423 VVMEATSQGLALGR--CDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPER 480

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +N DD       A+ +      + +F  ++KNAD    K++    ++ + V     
Sbjct: 481 HRKVVNVDDPNAPFFIAQGNQ--EVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHG 538

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  F
Sbjct: 539 ILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPG---RCELIDEEQAF 595

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +I + Y   P ++   +  + ++ P    R I V+G   E     +     +A
Sbjct: 596 GVIVD-YAHTPDALSRLLDSVRELRPK---RIITVIGCGGERDRGKRPIMTKIA 645


>gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC
           35896]
          Length = 510

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/512 (18%), Positives = 176/512 (34%), Gaps = 73/512 (14%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                LLQ +       +     ++ ++  S  +     F  IKG   DGH ++  AV+ 
Sbjct: 1   MKLSKLLQNVSVIEYKNVDMDLEISSLAYHSAKVEQNGLFVCIKGYKADGHKYLASAVEH 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
            A + VV T        + IP   V+D   AL  ++         K T+I IT + GKTT
Sbjct: 61  NAIVAVVETFQ-----DIDIPQVKVEDSRIALATMSSNYYDNPSKKMTVIGITATNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIF 165
           T  M+   L   KK    IG+                   + +   +A M    V     
Sbjct: 116 TAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLTTPESLDLQKYMAMMVEQGVTHLTM 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  S L   R   H V         I+  H+      E+    K+ +  G++ +    +
Sbjct: 176 EVSSSALELHR--VHGVDFDFVCFNNISRDHIDLHGSFEDYFQIKSTLIRGMKPSAKAVI 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR---------KWKQCSEQSWMEVQ 275
           N DDS    L  +        + ++  +S   D              WK     +   + 
Sbjct: 234 NADDSLLHDLIQEKQN----QVITYSVESNRGDLYCTQLDLSTGIANWKIVPNPTKSTLS 289

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L    +++     GYH   N +  + +  +   D+DT    L  F   E   +R+    +
Sbjct: 290 LLNSEVKIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGLHSFKGVE---RRFELIYD 346

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           + F  +  + + AN  +++  +  L ++         A+       G      + + AE 
Sbjct: 347 KEFKII--DDHFANTGNIRVTLETLKKMKYEQLHFIYAI------RGSRGVVVNRENAEE 398

Query: 396 LSLYNISHVWL------SGFHVLALKDALPRSIHVHY-------------SETMDGLFLF 436
           +    I ++ L         H +  KD + +     +              + ++    F
Sbjct: 399 IC-SGIENLPLKTFVATKSVHHVTEKDKVTQEEITVFQDIMNCCERTVPIYDDLEEAIAF 457

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +   +  GDV+++  +   G      LLLE+ 
Sbjct: 458 VLKEVQPGDVILL--AGCQGMDSGGKLLLEKL 487


>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
 gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 159/479 (33%), Gaps = 58/479 (12%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           ++G         + +DSR +   + F A+ G   DG  FI +AV++GA  V V  D    
Sbjct: 16  ALGKAASLVPGSLCLDSRQVKQGDIFIALVGTRADGRQFIANAVEQGAAAVFVEADKEWQ 75

Query: 78  IGSLS--IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                  +PV  ++ +   L++L     A    +  ++ ITG+ GKTT   +L   L+ +
Sbjct: 76  GVHWIGEVPVIALEQLTARLSELAGRYYAHPSRELRLVGITGTNGKTTCSLLLAQLLAGV 135

Query: 134 --KKTYACIGSYNNHIGVPLTLARMPVD----------------------------VDFG 163
             +   A IG+    +    +L  +                                   
Sbjct: 136 SGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVALQRILRQLRTGGASSA 195

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L   +     +    A+ T +   HL     +     AKAE+   +      
Sbjct: 196 AIEVSSHSL--QQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKAKAELL-FMPGLKHA 252

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD++ + L AK+ A    +   F   + AD  LR     +  +   +       E 
Sbjct: 253 LFNMDDAWVKALAAKTPA--GVSAIGFSLQEPADVYLRDIHLHASGASAWLVSPWGEAEF 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N++  +    I  A ++  +  +       GR +      +     ++ 
Sbjct: 311 HSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAAPGRMQPVVVDADVQEIQVLV 370

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P +++   + L  I  H   R   V G   +  +  +     +AE LS     +
Sbjct: 371 D-YAHTPDALE---NTLKAIREHQADRIWTVFGCGGDRDKTKRPLMGRIAEKLS----DY 422

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +  +         +   L                 F       GD+V++  K 
Sbjct: 423 VIVTNDNPRSEDPARIAADIVRGLNNPNGCLVLADRAQAIDFAVQQAKPGDLVLIAGKG 481


>gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 152/422 (36%), Gaps = 38/422 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +  +++       VN I  DSR I   + F AI G   DGH +I   +  
Sbjct: 1   MMILKDILYKVTINAVVGSTSVSVNKIEFDSRQIQVNDVFVAISGTVTDGHRYIDRVIDA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  +V   +++       +    V +   AL  +A            +I +TG+ GKTT
Sbjct: 61  GATTIVC--EVLPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
              +L             + +    +              LT+ R         V+F   
Sbjct: 119 VSSLLYQLFKKAGYKVGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQMNDEGVEFCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  +R    + T ++  HL       E    K   F+ L K      
Sbjct: 179 EVSSHGIHQSR--TEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVKKLFFDQLPKDAFALS 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     +   + A      Y++     AD++ +  +       ++V       E+  
Sbjct: 237 NMDDKNGLAMLQNTQAKK----YTYALKNYADYRAQILENEFSGLLLKVN----DSELWT 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L   G   +L  + D  ++ +S      GR + +    ++    ++D  
Sbjct: 289 RLIGSFNAYNILAIYGTAELLGLEKDEILRLISELENVSGRFQYF--ISDEKITAVVD-- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  +  ++ I    E   I V+G     G+  ++    +A + S  +   ++
Sbjct: 345 YAHTPDALKNVLETINNIRTKNE-ELITVVGC---GGDRDKTKRPKMAHIASTLSTKVIF 400

Query: 406 LS 407
            S
Sbjct: 401 TS 402


>gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 494

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 168/480 (35%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASVLFEKIRVKQVIGTLDKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             ++VVN +   +     +    V D L   +L    +      +     +TG+ GKT+ 
Sbjct: 61  CSIIVVNREQDLNGD---VTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI----FE 166
             M+ +    + K  A +G+    I    T              ++   VD G      E
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    E L K   
Sbjct: 178 VSSHGLSLGRL--RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + LN DD F E L + +       ++++G   +A F+    ++  +    E      S +
Sbjct: 236 VVLNNDDDFSEYLASVTPY----EVFTYGIDNDAQFRAINVEESLQGVKFEFDTPFGSYQ 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N++  +  V    A  +  I+A+    P EG   R           LI
Sbjct: 292 VESPYVGKFNISNIMAAMIAVWSKGATFEEIIEAVKSLEPVEG---RLEVLDPSLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y      M   I     + P  + + I ++G M   GE   +   ++  V       
Sbjct: 349 ID-YAHTADGMNKLIDA---VKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVA--CRAD 399

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V  +  +            L      S +V + +  +G+   I      GD VV+  K 
Sbjct: 400 YVIFTPDNPANDDPKMLTAELAKGATHSNYVEFEDRAEGIKHAI-DVAEPGDTVVLASKG 458


>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 493

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 149/418 (35%), Gaps = 36/418 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L+  ++           + G+  DSR I P   F  I G   DGHD++L AV  
Sbjct: 1   MARLENLISGLEVIETSGDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V   +  + G   + V  V D   AL             +  +I +TG+ GKTT
Sbjct: 61  GAIALLVEKPVAGTQG---VTVVRVKDTRKALPIVASNFYGAPSRQLRLIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDV---------------DFGIF 165
           T  ++T  L         +G+          ++A    +                D+ + 
Sbjct: 118 TTHLITSVLEEAGYQVGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTG-TI 223
           E+    L   R     +    AV T +   HL     +++   AK ++F  L+ K G   
Sbjct: 178 EVSSHALDLGR--VDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFA 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD  + + +  + +     + ++G +  A  +  + +   E S   ++     + +
Sbjct: 236 VINRDDPSWTVFRDATPS----RVVTYGITDEAAVRATEVRVEPEGSCFTLKWPEGDLRL 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G+    N L             +   + L       G   R+        FT+I 
Sbjct: 292 SLNLSGWFNVSNALAAAAFALKEGISPEVIKRGLEKVSGIPG---RFETVKCGQDFTVIV 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + Y   P  ++  +     I+   + R I V G   +     +     +A   S ++I
Sbjct: 349 D-YAHTPDGLENILKTARAIA---KKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSI 402


>gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
 gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
          Length = 490

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 179/478 (37%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   LL               ++G+ +DSR + P +AF A++G   DG  F+  A+  
Sbjct: 1   MMTLQQLLPNT--TLPATAAGVVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFVSQAIAA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  V+   +  +     ++P      +  ++ +LA            ++ +TG+ GKT+
Sbjct: 59  GAVAVLAEAETFSVQQEQAVPRVNFPGLSRSVGELAARWYGEPGSAMNVVGVTGTNGKTS 118

Query: 122 TKEMLTIALSSIKKTYACIGSY------NNHIGVPLTLARMPVDVDFG-IFELGMSHLGE 174
               L  AL+++    A +G+       N  I    T   + +      + E G   +  
Sbjct: 119 ITWFLRDALNALGHRCALVGTLGLGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVA- 177

Query: 175 IRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IF 224
           +   +H +  H        +AV + ++  HL     +E   +AK+ +F    + G     
Sbjct: 178 MEVSSHALDQHRLGPTPVSVAVFSNLSRDHLDYHGDMEAYLAAKSVLF---TRDGVKLAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD     L     A G++ + +FG    A  +       +E +  E+ + G+S  V 
Sbjct: 235 INCDDPVAYSLVG-CLADGVRCV-TFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVT 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N++   GI+       D+   AL+   P  GR +  + A   G  T+I +
Sbjct: 293 LPLFGRFNLSNLMAVAGILHGQGVSTDSLAGALAAITPVPGRMEPVQQA---GCPTVIVD 349

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++ A+        H  GR   ++G   +     +     +AE        HV
Sbjct: 350 -YAHTPDGLEKALQACRA---HFAGRLFCIIGCGGDRDTGKRPQMAAVAE----RGADHV 401

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +  +         +   L  +  V      D   +    +  DGDV+++  K 
Sbjct: 402 VFTSDNPRSEDPQKIIDEMCAGLTDTGSVQIIVERDRAVMDTVQAASDGDVILLAGKG 459


>gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
 gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
          Length = 479

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/459 (20%), Positives = 175/459 (38%), Gaps = 52/459 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I     
Sbjct: 11  QHNVKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKKNIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I   + L     +                    +++ +FE     L + R     ++
Sbjct: 127 GVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL--REIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F   L   G   LN D    E +K   H  
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK I + G     D ++ +     +   +      +        IG   A N+L+ +  
Sbjct: 245 NIKFI-TVGT--KGDLEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +    D  I +L      +GR +R          T I   Y   P +++ A++ L  
Sbjct: 302 IHYIGFAFDDVIDSLVEVKAVKGRMERI-------DNTNIFVDYAHTPDALEKALTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           I    + +   V G     G   ++    + ++ +      + ++  +           +
Sbjct: 355 IK-LRDSKLSVVFGC---GGNRDKAKRSLMGQIAAKR-ADTIIITDDNPRHEDPKLIRAE 409

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +       Y+E    +    +  ++L   D+++V  K 
Sbjct: 410 IISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 494

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 163/478 (34%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F    + +G
Sbjct: 1   MNASTLFEKIRVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             ++VV +          +    V + L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CQIIVVKSKQEVEGD---VTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    I    T                +  VD       + 
Sbjct: 118 ATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F E L + +       I+++G   +A F+     +  +    E+     +  V 
Sbjct: 238 LNNDDAFSEYLASVTPY----EIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQ 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V       +T ++A+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEG---RLEVLDPNLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VKPFVKRKLIFLVG-MA--GERDLTKTPEMGTVA--CRADYV 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            L        +V + +  +G+   I      GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTSELAKGATHDNYVEFEDRAEGIRHAI-EVAEPGDTVVLASKG 458


>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
 gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
          Length = 503

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 154/473 (32%), Gaps = 45/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL AI+   +       V  ++ DSR +     FFA+ G H DGH F+  A+ +GA 
Sbjct: 5   LSSLLDAIKPEEVRGGGDPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV   ++ +    +            +               +  +TG+ GK++T   +
Sbjct: 65  AVVHERELPSYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVTGVTGTDGKSSTTYFI 124

Query: 127 TIALSSIKKTYACIG-----------------SYNNHIGVPLTLARM-PVDVDFGIFELG 168
              L +      CI                  S      V   LARM        + E  
Sbjct: 125 YQLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEAT 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L         VR  + V+T I   H+      E+    K  +F GL + G   LN D
Sbjct: 185 SHGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEGGKAVLNLD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           D     L  ++ A     ++ +G    + A       ++    S   V    +++EV   
Sbjct: 245 DPSSGFLAERTRAG----VWGYGLGTREGARLWAEVREESLAGSRCLVH-GRETLEVWVP 299

Query: 287 GIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             G    +N+L  +   +     + +  +  +       GR +R      Q F  L+D  
Sbjct: 300 FPGRFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERVEA--GQPFLVLVD-- 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSLYNI 401
           Y   P + +  +  + +     EGR I V G   E     +     +    AEV+ L + 
Sbjct: 356 YAHTPGAFEKLLPFVRRF---VEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDE 412

Query: 402 S------HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                     L    + A  + L     +                  +GD V+
Sbjct: 413 DPRGEDRMAIL--REIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVL 463


>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 488

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 177/489 (36%), Gaps = 65/489 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  ++  S+++    AF  IKG   DGH++I  A+++GA L++V+     S     +
Sbjct: 21  DEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYDTSKLKDKV 80

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 +   AL+ ++            +I +TG+ GKT+T  M+   L         IG
Sbjct: 81  LFIKTSNTRKALSVISANFFEHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHKVGLIG 140

Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  N IG     A+                   +VD  + E+    L   R         
Sbjct: 141 TVKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVVMEVSSHSLELHR--VDCCDFD 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V T +   HL     +E   +AK ++FE  +K     +N DD +   +          
Sbjct: 199 VGVFTNLTQDHLDFHGTMENYFAAKLKLFEMSKKR---VVNVDDEWGRKIIRIYPDS--- 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++G +  AD      K    ++  E++        +V  +  G     N L      
Sbjct: 253 --VTYGINSKADVCAMSVKLYVNKNQFELRQLDNDNKEQVTLNIPGIFSVYNALAAASCA 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D+ T    L       G   R+    +   FT++ + Y   P  +   ++++  +
Sbjct: 311 YALGIDLKTIKAGLESVKAIPG---RFEIVESNDKFTIVID-YAHTPDGL---LNLMKTV 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDA 417
               +GR++ + G     G+  ++    + E+        V ++  +      +  ++D 
Sbjct: 364 DEVAKGRKVLLFGC---GGDRDRTKRPIMGEIAGKM-ADFVIVTSDNPRTEDPIKIIEDI 419

Query: 418 L-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS--------SNSCGFY--RL 460
           L       + +V   +  + +   I+++  + D +V+  K           +  F    +
Sbjct: 420 LVGLQKTNAEYVVIPDRFEAIKYAIKNA-KENDFIVLAGKGHETYQILKDRTIHFDEREV 478

Query: 461 INLLLEEFP 469
           +  +LEE  
Sbjct: 479 VRSILEELK 487


>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
 gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
          Length = 486

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 172/477 (36%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +   +I       V G+  DSR++     + A KG   DGHDFI HA+  
Sbjct: 1   MKTLQDILYGVSIEAIVGATTIPVKGVVFDSRNVKIDFVYVAQKGVQVDGHDFISHAISN 60

Query: 64  GAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA ++V          G   + V      LG L           K T++ +TG+ GKTT 
Sbjct: 61  GAKVIVCEFIPAECVAGVAYVKVENSSKTLGVLAS-NFYDNPSRKLTLVGVTGTNGKTTI 119

Query: 123 KEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARM-PVDVDFGIFE 166
             +L    SS       + +                 + I +   L  M    V     E
Sbjct: 120 ASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVESGVTHCFME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    + + R     +  ++ + + +   HL      +     K + F+ L KT     N
Sbjct: 180 VSSHGIAQNRI--EGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDSLPKTAFALTN 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A      Y++   ++ADF+ +  +       +++Q    S EV   
Sbjct: 238 VDDKNGTYMLQNTVAKK----YTYAIKQHADFKAQILECQFSGMLLKIQ----SQEVWTS 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   AQN+L    + S+L     + +K +S      GR +  +          +   Y
Sbjct: 290 LIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTLQTP----NKVTVVVDY 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  ++ I    E   I V+G     G   Q     +A+    ++   ++ 
Sbjct: 346 AHTPDALENVLQTIATIRTRNET-LITVIGC---GGNRDQEKRPLMAKAAVNFSDKVIFT 401

Query: 407 SG-----FHVLALKDALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVV--KS 451
           S         + + D +      HY +T+     +           +GD+V++  K 
Sbjct: 402 SDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKG 458


>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 485

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 163/467 (34%), Gaps = 37/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DLL        G      V G+++DSR + P + F A+ G   DG  FI  A++KGA
Sbjct: 4   TLADLLPETLSAPQGADG-VEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++    + A      +PV   +D   AL+ +A     R  ATI AITG+ GK++T E 
Sbjct: 63  VCILAPKGVTAP-----VPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEF 117

Query: 126 LTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGM 169
           L    +      A +G+                   I +  +L  +  + V     E   
Sbjct: 118 LRQIWAKAGIEAAALGTLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYD 228
             L +       VR  +   T +   HL      E+  S+K  +F  L   G    +N D
Sbjct: 178 HGLKQ--RRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMD 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             + + +   + + G+  +    + +  D  + +         +    +G+  EV    I
Sbjct: 236 SDWSQRVAQAAQSAGLSPVEIGWRGR--DLTVHEITPHPASQMVRFSWKGEEREVDLPLI 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N L    +        D A +A+       GR +      +     L    Y  
Sbjct: 294 GEFQAANALGAAAMAIASGVSPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLL---DYAH 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWL 406
            P  +     +L    PH +GR I V G   +     ++   ++A  LS   I       
Sbjct: 351 TPDGLD---KLLRAARPHTQGRIILVFGAGGDRDPTKRAPMGEIAARLSDVAIVTDDNPR 407

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S       K  L            +         L  GDV++V  K 
Sbjct: 408 SEDPAGIRKTILAACPGAQEIGDREAAIRAGIEMLKAGDVLLVAGKG 454


>gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 494

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 164/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPC----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
 gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
          Length = 474

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 166/454 (36%), Gaps = 47/454 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
             G++ DSR  +    F A  G   DG  FI  A+  GA  V+   +      + ++   
Sbjct: 11  FTGMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQEGFDWNPAWTVDHQ 70

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V  + G  + +          +  +I +TG+ GKT+    L  A +++++    IG+  
Sbjct: 71  PVTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIGTLG 130

Query: 145 NHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N     L+ A                 +    +    E+    L + R   + +   +AV
Sbjct: 131 NGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGR--VNGIDFKVAV 188

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKT 246
           +T +   HL     +   A AK ++F      G     LN DD+F   L ++  A G K 
Sbjct: 189 LTNLTRDHLDYHGDMASYADAKRKLFH---FGGVQAAILNQDDAFGRALLSELKAKG-KH 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + S+G S   D         +E   M+V        V    +G   A N+L  L  +   
Sbjct: 245 VLSYGLS-GGDVCGHDLHFDAEGLHMQVHTPQGEAMVHAKLVGRFNASNLLAVLATLLAS 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++ A++ L+   P  GR +     L  G   L+   Y  +P +++ A++ L + +  
Sbjct: 304 EVALEDAVRVLADIRPAPGRMQ----QLGGGGQPLVVVDYAHSPDALEKALNALREQA-- 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
            +   I V G   +  +  +    ++A  L+      V ++           +   +   
Sbjct: 358 -KANLICVFGCGGDRDKGKRPLMAEVASRLA----DKVIVTSDNPRNEDPKEIIAEVVAG 412

Query: 422 IH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +H         +        +   GDVV++  K 
Sbjct: 413 LHGPAQVEPDREQAITQAIRAAQAGDVVLIAGKG 446


>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 494

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/488 (17%), Positives = 162/488 (33%), Gaps = 63/488 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    I       + GI  DSR + P + F  + G   DGH+F   A  KG
Sbjct: 1   MNLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAADKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV   +      + +P   V D   A+     A   +  S+  +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   ++        IG+     G             L L R   D      +  + E
Sbjct: 116 TYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R          A+ T +   HL     +EE   AK   F  L         
Sbjct: 176 VSSHALEQGR--VKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDES 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 LN DD        ++ A     + ++G  ++AD +       ++ +   V    
Sbjct: 234 ARKYAVLNADDDASAYFAKQTAA----EVITYGLGEDADVRASNISITAQGTSFHVDTFR 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S ++    +G     N +  +    +    ++      +      G   R         
Sbjct: 290 GSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIK---NSLESVPGVDGRVEVVDEGQP 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           + +I + Y   P  ++  +  +++ +   EGR I V G     G+  ++    + ++ + 
Sbjct: 347 YAVIVD-YAHTPDGLENVLRTVNEFA---EGRVITVFGC---GGDRDRTKRPIMGKIAAK 399

Query: 399 YNIS-------------HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           Y+                + L       ++D +    +    +    +   I      GD
Sbjct: 400 YSDVVLVTSDNPRTEDPELILKDIEAGLVEDGVAAESYKLIVDRRKAIEKAI-EMASPGD 458

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 459 VVLIAGKG 466


>gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella schoenbuchensis R1]
          Length = 483

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 153/453 (33%), Gaps = 41/453 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GIS DSR + P   F A++G   DG  ++  A+++GA ++V  TD   ++  + +
Sbjct: 18  SIEITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIV--TDYNCALEGVYV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V DV  +L   A          + A+TG+ GKT+    +           A IG+ 
Sbjct: 76  PVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCAASIGTV 135

Query: 144 NN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L R+  +     V     E     L + R     VR   A
Sbjct: 136 GVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRL--DGVRLAAA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     +E+   AK  +F+  L       +  DD + + +       G + 
Sbjct: 194 AFTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRAG-RP 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+S      + + +    +  +E ++            G     N LM  G+    
Sbjct: 253 VLTIGRSGKF-ITINRIEHQRLKQCVECRMGNDIYTFDLPLAGEFQVTNALMAAGLAIAT 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                +  ++L       G   R     N      +   Y   P +++    VL  + P 
Sbjct: 312 NVPPSSVFRSLKKLQGAPG---RLELVGNTKDNAFVYVDYAHKPEALE---QVLLSVRPF 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPR 420
             GR I V G   +  +  +     +A          V ++  +          KD L  
Sbjct: 366 TLGRLILVFGCGGDRDQGKRPLMGKIA----ASKADIVIVTDDNPRTEDPAKIRKDILQA 421

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +              +    L  GD +++  K 
Sbjct: 422 ASGAMEIADRGEAIDYAVRLLEAGDTLIIAGKG 454


>gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 163/482 (33%), Gaps = 50/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-VN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    V  G++ID+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLMAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+            + V  V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDQQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK-TYACIGSYNNHIGVPL-----------------TLARMPVDVD 161
           T+   M    L   ++     IG+  + IG  +                  L     D  
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G   L  + +G +          + V T +   HL +   +E    AK  +F+GL +  
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR- 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++     L    + ++    +AD++       +  S   +   G+  
Sbjct: 240 -AVVNADDPVGAGIRK----LMPGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R + +   G  ++
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQIS---GGTSV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +P S+   ++ +   +    GR I V G     G+   +   D+  +   ++ 
Sbjct: 352 IVD-YAHSPDSLNKVLTTIRGFA---RGRVITVFGC---GGDRDTTKRADMGAIAGTHSD 404

Query: 402 SHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V  S         G      K  +                    +     D+V++  K
Sbjct: 405 VCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAGK 464

Query: 451 SS 452
            S
Sbjct: 465 GS 466


>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 510

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 171/485 (35%), Gaps = 57/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL       IG      V+G+S DSR I    AFF++ G + DG  +I  A+  G
Sbjct: 1   MKLRELLSDESAFVIG-DEDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A +++ ++    +     +    + D+   ++            +  I+ ITG+ GKTT 
Sbjct: 60  ASVIITDSKYDTND----VAQVVIKDIFRFMSLFGAKFYNYPDRELNIMGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             M+   L++       IG+ N      +  A                     + + + E
Sbjct: 116 TYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDISNNGIKYLVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----G 221
           +    L   R   + +    AV T +   HL     ++    AK+ +F+ L         
Sbjct: 176 VSSHALSLGR--VYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKK 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD +   L     +  IK +YS  +   ADF+    K  ++ +   +    K  
Sbjct: 234 CAIINVDDEYGRKLLKVGISAEIK-LYSAIEKNAADFKASNIKVTNKGAVFNLVFCNKRA 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    IG H   N L  L          + A++ L+      G   R       G    
Sbjct: 293 RIRIKHIGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPG---RLEKVNTIGLGFE 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I   Y     ++++ +  L  ++P    R I V G     G+  ++    + ++    + 
Sbjct: 350 IVVDYAHTDDALESVLRALKDLNPK---RIIIVFGC---GGDRDRAKRPLMGKIAVEMS- 402

Query: 402 SHVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             V+++  +                +K A  ++  V   +    +   I  +   GD+++
Sbjct: 403 DFVFVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKV-VVDREAAIKEVIMMAADKGDIIL 461

Query: 449 V--KS 451
           +  K 
Sbjct: 462 LAGKG 466


>gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
 gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
          Length = 525

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 157/363 (43%), Gaps = 19/363 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
                    +   +  +I ITGS GKT+ K  LT  LS         GSYN  +GV +T+
Sbjct: 163 YYADARRIIKSMPQLKVIGITGSYGKTSVKHFLTRILSEKYNVVMTPGSYNTPMGVTITI 222

Query: 154 -ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    +  + E+G   +G+I+ L +L  P I ++T +A  HL  F  IE I   K E
Sbjct: 223 RNHIKPIHEIFVCEMGAKQIGDIKELCNLAHPQIGILTAVADQHLDTFGSIENIQKGKFE 282

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSW 271
           + + L K G  +LN+D  + +     +H       +++     +AD+Q R  +  ++   
Sbjct: 283 LIDALPKDGVGYLNFDYEYVKNHSPIAHVEN----HAYSLHQPDADYQARDLQYTAKGMQ 338

Query: 272 MEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             V  + +  ME+    +G     N+L+   +       +     A+    P +    R 
Sbjct: 339 FSVYHKNEKVMELETKLMGEANMSNILVCCAVALRFDVPIKNIQFAVKNLQPVK---HRM 395

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               N G  T++D+++N+NPA  K A++VL QI     G+++ +   M E+ E     + 
Sbjct: 396 ELKRNPGGITILDDAFNSNPAGAKMALNVLKQI---EGGQKVIITPGMIELAEKEYELNK 452

Query: 391 DLAEVLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGD 445
            L E ++  ++ +  L G    L +++ L         ++ +  +      +      GD
Sbjct: 453 VLGEQIAE-HVDYAILVGPKQTLPIQEGLKNKNYPEDRLYIARNLTDANQHLMKIAKAGD 511

Query: 446 VVV 448
           VV+
Sbjct: 512 VVL 514


>gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
 gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia rickettsii]
 gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 479

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 175/459 (38%), Gaps = 52/459 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I     
Sbjct: 11  QHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I   + L     +                    +++ +FE     L + R     ++
Sbjct: 127 GVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL--REIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F   L   G   LN D    E +K   H  
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +K I + G     D ++ +     +   +      +        IG   A N+L+ +  
Sbjct: 245 NVKFI-TVGT--KGDLEITRLNCSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +    D  I +L      +GR +R          T I   Y   P +++ A++ L  
Sbjct: 302 IHYIGFAFDDVIDSLVEVKAVKGRMERI-------DNTNIFVDYAHTPDALEKALTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           I    + +   V G     G   ++    + ++ +      + ++  +           +
Sbjct: 355 IK-LRDSKLSVVFGC---GGNRDKAKRSLMGQIAAKR-ADTIIITDDNPRHEDPKLIRAE 409

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +       Y+E    +    +  ++L   D+++V  K 
Sbjct: 410 IISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|83596046|gb|ABC25404.1| UDP-MurNAc-pentapeptide synthetase [uncultured marine bacterium
           Ant39E11]
          Length = 364

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 169/381 (44%), Gaps = 29/381 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V+ V + L +L +LA A R+    T+I +TGS GKTT KE+    LS     +A  G++N
Sbjct: 12  VYKVVNALTSLQELAHAHRMNWGGTLIGLTGSNGKTTAKELFRSVLSQSFNVHATDGNFN 71

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+PLTL  +    +  + E+G +H GEI  LT +  P I  IT    AHL  F G++
Sbjct: 72  NHIGLPLTLVGLKKSHEVAVIEMGANHRGEIASLTAIAAPDIGYITNFGQAHLEGFGGVD 131

Query: 205 EIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +   K E+++ L   G    +N  D         +     K +    K +     +   
Sbjct: 132 GVIQGKIELYQWLTSHGKPSLVNDSDPLQIEHAGNNKLPSSKDVVCQSKDQGVHVTIGDT 191

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  S                  H +G   + +++ ++ +   +    +   K +  + P 
Sbjct: 192 RAQS------------------HLVGDFHSGSLVASVNLGRYMGMADEAIAKGIEAYIPS 233

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             RG+      N+    +  ++YNANP+SM+A++  +  + P      IA  GD+ EMG 
Sbjct: 234 NNRGQWLTTDSNR----IFLDAYNANPSSMEASLLAVHALHPELPHVYIA--GDIFEMGS 287

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             +S H  + +++   N+  V L G      +   PR++  H  +       + +S+ V 
Sbjct: 288 HEKSAHQSMVDLMQTLNLKTVHLVGLAFGKAQ--APRTMVKH--DNTKDALAYFKSNPVR 343

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G +V +K+S       L+  L
Sbjct: 344 GAMVWIKASRGMALEGLLEAL 364


>gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. AR 15-3]
          Length = 484

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 158/454 (34%), Gaps = 42/454 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GIS DSR + P   F A+KG   DG +++  A+++GA +++  TD      +LSI
Sbjct: 18  SIEITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVII--TDNNFVFENLSI 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V +V   L   A          ++A+TG+ GKT+    +      +    A IG+ 
Sbjct: 76  PVIHVSEVRHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIGTV 135

Query: 144 NN-----------HIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                            P+ L R+         V    FE     + + R     V    
Sbjct: 136 GVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRI--DGVHLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T +   H+     IE+   AK  +F   L +     +  DD + + +         +
Sbjct: 194 AAFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVR-QAHR 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G++      L + +    +  +E ++            G     N LM  G+   
Sbjct: 253 KVLTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAAGLAIA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A  D   ++L       G   R            +   Y   P +++    VL  + P
Sbjct: 312 TNAPPDMVFRSLEKLQGPPG---RLELVGKTKDGAPVYVDYAHKPEALE---QVLLSVRP 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHV 424
             +GR I V G   +     ++    +AE         V ++  +      + + + I  
Sbjct: 366 FTQGRLILVFGCGGDRDRGKRALMGKIAE----NKADVVIVTDDNPRTEAPEKIRKDILQ 421

Query: 425 HYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
              E ++         +    L  GD ++V  K 
Sbjct: 422 VVPEAIEIADRGKAIDYAVRLLKAGDTLIVAGKG 455


>gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 484

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 158/453 (34%), Gaps = 40/453 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GIS DSR + P   F A+KG   DG  ++  A+Q+GA +++  TD      +LSI
Sbjct: 18  SIEITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVII--TDNNFVFENLSI 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V DV   L   A         T++A+TG+ GKT+    +      I    A IG+ 
Sbjct: 76  PVIHVLDVRHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGTV 135

Query: 144 NN-----------HIGVPLTLARMPVD------VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                            P+ L R+  +      V    FE     L + R     V    
Sbjct: 136 GVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRI--DGVHLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T +   H+     IE    AK  +F   L +     +  DD + + +         +
Sbjct: 194 AAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVR-QAHR 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G++      L + +    +  +E ++            G     N LM  G+   
Sbjct: 253 QVLTIGRTGKF-ITLNRVEHQRLKQCVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A  D   ++L       G   R     N      +   Y   P +++    VL  + P
Sbjct: 312 TNAPPDMVFRSLEKLQGAPG---RLELVGNTEDGAPVYVDYAHKPEALE---QVLLSVRP 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA-----EVLSLYNISHVWLSGFHVLALKDALPR 420
             +GR I V G   +  +  ++    +A      ++   +             +  A+P 
Sbjct: 366 FTQGRLILVFGCGGDRDQGKRALMGKIAGNKADIMIVTDDNPRTEAPEKIRKDILQAVPE 425

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +I +           +    L  GD ++V  K 
Sbjct: 426 AIEI---ADRGQAIEYAVGLLKAGDTLIVAGKG 455


>gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 494

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 168/480 (35%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + +++G
Sbjct: 1   MNASALFEKIRVKNVIGTLDINVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             +VVVN ++        +    V D L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CRIVVVNRELELEGD---VTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI----FE 166
             M+ +    + K+ A +G+    I    T              ++   VD G      E
Sbjct: 118 ATMIHLIYRKLNKSSAYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    E L K   
Sbjct: 178 VSSHGLSLGRL--RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + LN DD F   L   +       ++++G    A F  +   +  +    ++        
Sbjct: 236 VVLNNDDDFSGYLANVTPY----EVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYH 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N++  +  V    A ++  I A++   P EG   R           LI
Sbjct: 292 VKSPYVGRFNISNIMAAIIAVWSKGATMEEIINAVTSLEPVEG---RLEVLDPSLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y      M   I     + P  + + I ++G M   GE   +   ++  V       
Sbjct: 349 ID-YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDMTKTPEMGSVA--CRAD 399

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V  +  +            L        +V + +  +G+   I      GD VV+  K 
Sbjct: 400 YVIFTPDNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIRHAI-DVAEPGDTVVLASKG 458


>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 499

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 160/478 (33%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F DL+  +       V    V GI+ DSR   P   F AI G   DGH F+  AV +G
Sbjct: 1   MNFRDLINHLNVLEHSPVLDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V++   +    G        V D     AL              ++ +TG+ GKTTT
Sbjct: 61  AAAVLLQQKVPVPEGVAWA---VVPDTRKGLALAASRFYGEPGRALRLVGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             ++     + +     IG+ +N I              L L R+        V   + E
Sbjct: 118 THLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDVVLE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R   H +    AV T +   HL   +  E+  +AKA++F GL +     +N
Sbjct: 178 VSSHALRLSR--VHGLSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGLGEEAAAIIN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   L   +    I    ++   + AD +    +         ++ +  S  V   
Sbjct: 236 RDDPYGVRLLDLTRGCRI----TYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPVALR 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L    +  +     +     L       GR +R      Q +  +ID  Y
Sbjct: 292 LSGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGRFER--VDQGQEYTVIID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +    +I+P   GR I+V G   +     +         +S     +  L
Sbjct: 348 AHTPDGLENLLRAAREIAP---GRLISVFGCGGDRDRTKRPLMG----AISARGADYSVL 400

Query: 407 SGFHVLA---------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +++   R     Y                   GDVV++  K 
Sbjct: 401 TSDNPRTEDPLAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKG 458


>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
 gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
          Length = 493

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 170/461 (36%), Gaps = 53/461 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++
Sbjct: 22  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 76

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 77  PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 136

Query: 142 SYNNHI-----------GVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187
           +    I              +T  R    +     E   + +S +  +      +   IA
Sbjct: 137 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSH 240
           V T +   HL     + +   AKA +F  L              LN DD      +  + 
Sbjct: 197 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + +FG   +A    +  +  S  +  ++ + G    V    IG     NML   
Sbjct: 257 A----HVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAF 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     D  IK+L      +G   R++   +    ++I + Y+  P  +  A+  +
Sbjct: 313 AAAYASGIPEDQIIKSLEKVTGVKG---RFQSVPSHTGVSVIVD-YSHTPDGLLNALETI 368

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVL 412
              +         V+G     G+  ++    +A++   ++   ++ S           + 
Sbjct: 369 QDFATKD---IYCVVGC---GGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILN 422

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +P +    Y +    +   I+++   GDVV++  K 
Sbjct: 423 DMVAGVPNADVPVYEDRHVAIAKAIEAA-QPGDVVLIAGKG 462


>gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus 04-02981]
 gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 494

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 165/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 465

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 166/447 (37%), Gaps = 52/447 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI+ DSR +     FFAI+G  +DGH+F+  A+++GA  VVV  D+ A        V  
Sbjct: 14  QGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEAVQR-----VIK 68

Query: 88  VDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V++    L         R      ++ +TG+ GKTTT  +L   L         +G+   
Sbjct: 69  VENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHAGLMGTIQY 128

Query: 146 HI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +             P+T  R   +         + E+    L + R           + 
Sbjct: 129 RLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEVSSHALDQYR--VWGTEFEAVIF 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E+   AKA +F    K     +N DD + + L   +  LG +   +
Sbjct: 187 TNLTQDHLDYHRDMEDYFRAKARLFFD-YKYRFAVVNTDDPYGKRL---ARDLGDRA-LT 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G+      ++  +K   + S + V  +GKS     + IG   A N+   L     +  D
Sbjct: 242 YGREGE-TLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVGID 300

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   +AL   H   GR + +R   ++GF  ++D  Y   P +M   +  + +++ +   
Sbjct: 301 PNAIQEALKDVH-VPGRFEVHRS--DRGFIAVVD--YAHTPDAMDNVLRTMRRLTKN--- 352

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPR 420
           R I V G         +      AE  S      V ++  +         +  +   +  
Sbjct: 353 RVICVFGAGGNRDRGKRPLMGKSAEKWS----DVVIITSDNPRDEEPERIIEDILKGVED 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV 447
              V              +   +GD+V
Sbjct: 409 KGKVKVIPDRREAIAEALNIAKEGDIV 435


>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
 gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
          Length = 516

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 158/429 (36%), Gaps = 44/429 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +LL       +   P   + G+S+DSR +   + F A+KG   +G  +I  A+++
Sbjct: 9   MTTLSELLAEF--VDVSRCPATPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQ 66

Query: 64  GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
           GA  V++   +  A  G LS+PV  V  +   ++ +  +  A    +  + AITG+ GKT
Sbjct: 67  GAAAVLIEAGEETADHGQLSVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGKT 126

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGI------------ 164
           T  ++L      + +   C+G+              +A +  D +               
Sbjct: 127 TCAQLLANLFELLGEPAGCVGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVAM 186

Query: 165 --------------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                           +  S  G ++     +R   A+ T ++  HL     +   A+AK
Sbjct: 187 QRILAELRDAGARRVAIEASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAAK 246

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           + +F  +       +N DD+   L+ A          YSF ++  AD    + +  +   
Sbjct: 247 SRLFA-MSGLKHAVINLDDNVGRLILANLDPAVDGITYSF-ENHTADIHCDRIELGASTL 304

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             E+        +    +G     N+L  +G   +    +D  + A +      GR +  
Sbjct: 305 SAELVTPWGRGRLTSPLLGKFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEIV 364

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             +       L+   Y   P ++  A+  L        G+ + V G   +     ++   
Sbjct: 365 DPSAR----PLVVVDYAHTPDALDKALRALR---LQCSGKLVVVFGCGGDRDRGKRAEMG 417

Query: 391 DLAEVLSLY 399
            +A+ L+  
Sbjct: 418 RVADQLADL 426


>gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 493

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 165/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 494

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 164/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQPLPA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   I 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 573

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 151/389 (38%), Gaps = 34/389 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +          G V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 66  LGELAARLGA---APQESGDVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAV 122

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV   +D  G + +LA     R  +    I ITG+ GKTTT  
Sbjct: 123 AVLTDPAGAERAAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAY 182

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L    ++   IG+    IG     +    P   D       M   G     +   
Sbjct: 183 LVEGGLRGAGRSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           +AV   ++P H+   SG+E+   AKA++F    ++    +N+DD 
Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTP-RRSRLGVVNFDDE 301

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           +   L  ++       + +F      +AD++    +   + S   V   +G+ +      
Sbjct: 302 YGRRLIDEASV----PVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARAPL 357

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  +++   D  TA   ++      GR +R     + G   L    Y 
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERV----DAGQPYLAVVDYA 413

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
               ++++ +  L +++   EGR   VLG
Sbjct: 414 HKTDAVESVLRSLRKVT---EGRVHIVLG 439


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 107/463 (23%), Positives = 186/463 (40%), Gaps = 46/463 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKG 64
             ++ +   G  IG      V  +  DSR+ +  E   F A+KG ++D H FI   V++ 
Sbjct: 5   LSEIARICGGELIG--EDLPVARVLTDSRNCSFGEEPLFVAMKGTNHDSHAFIGEMVRRD 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               +         G   +    V   + AL +LA   R R K  ++ ITGS GKT  KE
Sbjct: 63  VKAFLAERKTQLPAGCGCV---VVPSAIAALQQLAAHHRTRFKGRVVGITGSNGKTVVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +   + +  K +    SYN+ +GV L+L  +  D +  + E G+S  GE+  L  ++RP
Sbjct: 120 WIAQQIPAGVKYFRSPKSYNSQLGVALSLLMIEGDEELALIEAGISCPGEMVRLERMIRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              + T+I  AH  NF+ +EE ++ K  + +G     TI  +   S  E +        I
Sbjct: 180 DTVIFTSIGEAHQENFTSLEEKSAEKLVLAKGAR---TIIYHGGSSLLERM--------I 228

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+Y            R+ +  +E    E QL    +E    G G   AQ   +      
Sbjct: 229 RTLYG----------GRQLQDAAEYPLPE-QLPAGVLE---SGAGRVDAQ---LVGAFCR 271

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++             F        R           LID++YN++  S+  A+  L  ++
Sbjct: 272 VMGFP-------DPDFGRIRPVAMRLELKEGINGSLLIDDAYNSDINSLSIALDYLHNMA 324

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    +L D+ + G      + ++A +++   +S +   G  +         +   
Sbjct: 325 AGRP--MTLILSDIEQSGVEDGVLYGEVARLVAAAGVSRLIGVGDRIRNAGANF--ACDS 380

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T D L   ++   V G VV++K S    F R+ + L  +
Sbjct: 381 AFYRTTDELLRNLRRDDVAGRVVLIKGSRDSHFERVSHALERK 423


>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
 gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
          Length = 504

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 186/482 (38%), Gaps = 51/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+++ I+  +I       VN IS DSR I   + F AIKG   DGH++I   + +G
Sbjct: 7   MNILDIIENIKIKTIYGSLPTKVNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     ++   ++ V    ++    + LA      +K   +A+TG+ GKT+   
Sbjct: 67  AALVIASRYEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTVAVTGTNGKTSIST 126

Query: 125 MLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--- 179
           ++   L  + ++ + IG+  +  +   P+ L     DV     ++G  H  +I+ L    
Sbjct: 127 LVHNMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEA 186

Query: 180 ----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFL 225
                     + V   +A+ T +   H+     ++  A  K+ +F  L     +     L
Sbjct: 187 SSHAMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVL 246

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSM 281
           N DD ++ ++   S  L  + I      + ADF     KQ SE    ++   ++      
Sbjct: 247 NKDDEYYSIM---SKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEY 303

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E   + IG  M  N+L  L  V +    V+  +  L       GR +     L +     
Sbjct: 304 ECQTNYIGDFMVSNVLAALIAVWLKGYSVEKLVNILPNLGALYGRME----ILGEDLPID 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I   +   P   K  +    +I  +   +R  +L  M    ++S+     + E++S    
Sbjct: 360 IISDFAHTPDGYKKLLEATREIRKN---KRTLLLTGMGGGRDISKG--PLIGEIISE--A 412

Query: 402 SHVWL---------SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            +V +             +  ++  +  ++    +  T       I      GDVV++  
Sbjct: 413 DYVVITTDSPRDEDVEVLMGTIEKGMTHKNYEKVWFRT--DAVKRIIQLAEPGDVVILAS 470

Query: 450 KS 451
           K 
Sbjct: 471 KG 472


>gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
 gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
          Length = 496

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 175/484 (36%), Gaps = 52/484 (10%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DLL+A+  G   G   +G +  +  D+R++ P  AF AIKG  +DGH  +      
Sbjct: 1   MQVEDLLRAVPSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA L+VV   +  +     +  F V       AL       R   +  ++A+TG+ GKTT
Sbjct: 61  GAKLMVV-EVLPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIF 165
              +++  L  +      IG+ +  +              L L ++  +         + 
Sbjct: 120 ISSLISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALI 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----- 220
           E     L   R     +    A+ T +   HL     +E  A AK+ +F  L +      
Sbjct: 180 EASSHALALGRLWATDI--DCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEG 237

Query: 221 -GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD +  ++   + A     + ++  +   A     +           +  + 
Sbjct: 238 PRLAIINADDPYASIMMQATSA----DVLTYSLEDPKASAYADQLAVQDGNQTFRLHYRN 293

Query: 279 KSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           ++ +VV   +G +   N +   L +V        T +  +  F   EGR +R    L Q 
Sbjct: 294 QTYQVVSPMLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQR--LDLGQE 351

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  +   P +++  +  L   SP    R + ++G     G        ++ + + 
Sbjct: 352 FQVVVD--FAHTPDAIERVLQELKAQSPK---RLVTIIGHSG--GNRDSGARPEIGDKVF 404

Query: 398 LYNISHVWLSG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV- 449
            Y+   ++ +             + +     V Y   E       ++ S    GD++V  
Sbjct: 405 EYSDWIIFTADNPRHEPVAKICAELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFA 464

Query: 450 -KSS 452
            K S
Sbjct: 465 GKGS 468


>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7425]
 gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
          Length = 501

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/483 (18%), Positives = 171/483 (35%), Gaps = 50/483 (10%)

Query: 5   WTFHDLLQAIQGH--SIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
               +LL A+Q     IG +P        +  +S +S +  P   F  + G   DG +F 
Sbjct: 1   MKLRELLTAVQSEITLIGDLPCHPALDREITSLSTNSWACQPGSLFIGMPGTRVDGGNFW 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITG 115
             A+  GA   +V+  +     + +  V  V DV  A   +A         +  ++ +TG
Sbjct: 61  ASAISAGAVAALVSAAVPLPDPAEAC-VIPVQDVSRACGAIAAALYNYPTQRLKLVGVTG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVD 159
           + GKTTT  ++   L+   +  A +G+           A                 +   
Sbjct: 120 TNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQLASAVKAG 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+    L + R         + V T +   HL     +E+  SAKA +F     
Sbjct: 180 CPFAVMEVSSHALAQGR--VQGCTFQVGVFTNLTQDHLDFHKDLEDYFSAKALLFSPGYL 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQG 278
           +G   +N DD + + L  +        ++++  S + ADF  R     +      +    
Sbjct: 238 SGKAIINQDDPYGQRLIQQLEPA---QVWTYSTSDSTADFYTRDLNYLANGVEGILHTPE 294

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +      +G     N+L  +G    L  ++ T   AL  F    GR ++ + A +Q  
Sbjct: 295 GEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDI 354

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D  Y   P S++   ++L    P  + R I V G     G+  ++    +  + + 
Sbjct: 355 SVIVD--YAHTPDSLE---NMLRAARPFVKHRMICVFGC---GGDRDRTKRPKMGGIAAQ 406

Query: 399 YNISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
                V  S          + +     +P  +++               +   GD V++ 
Sbjct: 407 LADQVVVTSDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIA 466

Query: 450 -KS 451
            K 
Sbjct: 467 GKG 469


>gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
 gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
          Length = 495

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 176/477 (36%), Gaps = 42/477 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +L     G +     +  + G+++DSR + P   F A+ G    G +FI +A++ 
Sbjct: 1   MKSLAEL-----GLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRM 55

Query: 64  GAGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            AG ++ +          + +    V    D   AL + A         T+IA+TG+ GK
Sbjct: 56  KAGAILTDAKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGK 115

Query: 120 TTTKEMLTIALSSIK------KTYACIGSYNNHI----GVPLTLAR-MPVDVDFGIFELG 168
           T+           +        T    G++N+ +      P+TL R M      GI  + 
Sbjct: 116 TSVSTFCRQIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVA 175

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
           M  S  G  +     V    A  +  +  HL      E    AK  +F+  L + G   +
Sbjct: 176 MEASSHGLDQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVI 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + + A   A G + +   G+  +A  +L   +  +    +  + QG++ +   
Sbjct: 236 NLDDPKGKEVAAICTARG-QEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARL 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A+N+L+  G+V    AD D     L       G   R   A  +     +   
Sbjct: 295 ELIGGFQAENVLLASGLVIAAGADPDEVFDTLQYLTTVRG---RMELAATRQSGAAVFVD 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEVLSL 398
           Y   P +++ A   L  + PH  GR I ++G   +           + + H D+  V   
Sbjct: 352 YAHTPDAVETA---LRAMRPHVMGRIIVIVGAGGDRDAGKRPLMGAAAAQHADIVIVTDD 408

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVV--KS 451
              S    +      +  A+        +E  D     ++    L  GD +++  K 
Sbjct: 409 NPRSEDPAA-IRAAVMAGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKG 464


>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
 gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
          Length = 488

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 166/475 (34%), Gaps = 49/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       +N I  DSR +   + F AI+G   DGHD+I +A  +GA 
Sbjct: 4   LKDILYKVNMKAVTGDTGVTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGAL 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            +V        I    +    V+D   AL  ++         K  ++ +TG+ GKTT   
Sbjct: 64  AIVCEKIPDEVING--VTYIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIAT 121

Query: 125 MLTIALSSIKKTYAC---------------IGSYNNHIGVPLTLARM-PVDVDFGIFELG 168
           +L    +                       I +  + I +   L  M  V V+F   E+ 
Sbjct: 122 LLYDLFTKAGFKCGLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVS 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              + + R  T  ++    + T ++  HL       E    K   F+ L  +     N D
Sbjct: 182 SHGIDQHR--TTALKFEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDELPASAFALTNVD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E++   + A      +++     AD++ +  +       ++V       E+    I
Sbjct: 240 DKNGEIMLQNTKAKK----HTYALKSFADYKAQILENNFTGLLLKVD----DQELWTKLI 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L    +  +L       ++ +S  +   GR + Y  +  +    ++D  Y  
Sbjct: 292 GNFNAYNVLAIYAMADLLGLKTLEILRIISELNSVSGRFQ-YVISEKEKITAIVD--YAH 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  +  ++ I    E   I V+G     G+   +    +  + S  +   V+ S 
Sbjct: 349 TPDALKNVLETINSIRTRNE-ELITVVGC---GGDRDTTKRPKMGHIASALSTKVVFTSD 404

Query: 409 ----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                    + + +   +     +                      D++++  K 
Sbjct: 405 NPRTEDPDKIIEEVEGGVEPQNFKKTMSVTNRKQAIKTACQMAGQNDIILIAGKG 459


>gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
 gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
          Length = 486

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 166/474 (35%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +    +    +  ++ +  DSR ++    F AIKG   DGHDF+    + GA 
Sbjct: 4   LKDILYGVAIEQVVGSTEIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             +V  + +  + +  +    V +   AL            SK  ++ +TG+ GKTT   
Sbjct: 64  AAIV--ETLPEVIAEGVTYIKVANSATALGVVASNFYHNPSSKLKLVGVTGTNGKTTVCT 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---VPLT-----------LARMPVDVDFGIFELGMS 170
           +L      +      + +  N+I    VP T           L    VD       + +S
Sbjct: 122 LLYKLFKKLGYNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVDAGCEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++     +     V T I   HL      +    AK   F+ L        N DD 
Sbjct: 182 SHSVVQHRIDGLEFAGGVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSKAFALTNVDDR 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A       ++  +  ADF+ +  +         + L    MEV    +G 
Sbjct: 242 NGNVMLQNTRAHKK----TYALNAVADFKAKIIENLFSG----LHLDIDGMEVYFRLVGS 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L  D    +  LS+    EG   R+   +       I + Y   P
Sbjct: 294 FNAYNLLAVYGTALLLEQDRTKVLTVLSMLTGAEG---RFDYIIAPNKVIGIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +S +  IS   E   I V+G     G+  +     +A+    ++   +  S   
Sbjct: 350 DALRNILSTIENISSGTES-IITVVGC---GGDRDREKRPIMAQTACDWSHKVILTSDNP 405

Query: 409 ---------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +LA   A+ +   +   +  + +          GD++++  K 
Sbjct: 406 RTEKPEDILNDMLAGVSAVNQKKVLTILDRREAIKAA-CHLAKPGDIILLAGKG 458


>gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 494

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 162/457 (35%), Gaps = 46/457 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              + GI++DSR +     F A+ G    G  F   A+  GA  ++ +      +  L  
Sbjct: 21  DPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVAELLR 80

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---- 135
             ++ +  V+D   AL   A         T++A+TG+ GKT+    +      +      
Sbjct: 81  ESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWVELGHQAVN 140

Query: 136 --TYACIGSY----NNHIGVPLTLA-----RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             T    GS+    N+    P+TL           V     E     L E R L   V  
Sbjct: 141 LGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGL-EQRRL-DGVHL 198

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL      E   +AKA +F   L   G   +N DD   E ++A + A G
Sbjct: 199 AAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRAVAAARG 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + S G+    D  L   +  +    M      K  +   + IG   A+N+L+  G+V
Sbjct: 259 -QEVISVGRGLG-DLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENILLACGLV 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       L       G   R + A  +     +   Y   P ++  AI  L   
Sbjct: 317 IASGEDPQAVFDTLPHLQTVRG---RMQLAATRENGATVFVDYAHTPDAVATAIKALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH  GR +A++G     G+   +    + +  +  N   V ++  +           A+
Sbjct: 372 -PHVLGRLVAIVGA---GGDRDAAKRPLMGQ-AAQNNADLVIVTDDNPRSEDPAVIRAAV 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           K   P ++ V          L    +L  GD +++  
Sbjct: 427 KGGAPDAMEVG---DRAEAILRGVDALGAGDALLICG 460


>gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 494

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 164/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 494

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 165/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMVHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 492

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 165/471 (35%), Gaps = 49/471 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G  LVVV
Sbjct: 6   LKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVV 65

Query: 71  NTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           N +        ++    V D L   ++    +      +     +TG+ GKT+   M+ +
Sbjct: 66  NKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHL 122

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGE 174
               ++K  A +G+    I    T                +  VD       L +S  G 
Sbjct: 123 IQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS 230
           +      V   +A+ + +   HL     +E    AK+ +F    E L K   + LN DDS
Sbjct: 183 VLGRLRSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDS 242

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F E L+  +       ++S+G  + A F  +  ++  +    +      +  V    +G 
Sbjct: 243 FSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGK 298

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N++  +  V      ++T IKA+    P EG   R           LI + Y    
Sbjct: 299 FNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID-YAHTA 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             M   I     + P  + + I ++G M   GE   +   ++  V       +V  +  +
Sbjct: 355 DGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYVIFTPDN 406

Query: 411 VLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +    + H +Y   +               GD VV+  K 
Sbjct: 407 PANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 457


>gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 494

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 169/468 (36%), Gaps = 50/468 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           + + P   +  + +DSR++     F A++G   DG  +I  A+ KGA  V+  T+     
Sbjct: 11  VELAPNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQH 70

Query: 79  GSLSI----PVFGVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            S  I    P+     +   L AL  L        K T++ +TG+ GKTT  ++L    +
Sbjct: 71  LSTKIEQGVPIISFYQLGSHLSALAGLF-YDNPSHKLTLVGVTGTNGKTTISQLLAQWTT 129

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELGMSHLGEI 175
            +    A +G+  N +   +  A                      DF   E+     G +
Sbjct: 130 LLGHRSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSH--GLV 187

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-L 234
           +     +   +A+ T ++  HL     +E  A AK  +F  L       +N DDS  +  
Sbjct: 188 QHRVEALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQ-IINADDSVGQTW 246

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+ + +A+ +     F   +    +    +   + + ++ +      E+    IG     
Sbjct: 247 LQEQPNAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALIGQFNVS 306

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+    +  L  D++  +K +       GR +R   + +     ++D  Y   P +++
Sbjct: 307 NLLLVFATLLSLGYDIEKLMKTVPQLTGVCGRMER--LSASNQPTAIVD--YAHTPDALE 362

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
            A+        H +G+   V G   +     +     +AE  +     HV ++  +    
Sbjct: 363 KALQA---ARLHCQGKLWCVFGCGGDRDRGKRPIMAKIAEQFA----DHVIVTDDNPRTE 415

Query: 414 --------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +        HV      D   +         DVV++  K 
Sbjct: 416 SAAQIVQDILAGFEHPQHVEVCHARDQAIIQALQKADSDDVVLIAGKG 463


>gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
 gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
          Length = 494

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 99/479 (20%), Positives = 167/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASVLFEKIRVKQVIGTLDKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             ++VVN +         +    V D L   +L    +      +     +TG+ GKT+ 
Sbjct: 61  CSIIVVNREQDLKGE---VTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI----FE 166
             M+ +    + K+ A +G+    I    T              ++   VD G      E
Sbjct: 118 ATMIHLIYRKLNKSSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGT 222
           +    L   R     V   +A+ + +   HL     +E    AK+ +F    E L K   
Sbjct: 178 VSSHGLSLGRL--RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKY 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + LN DD F E L + +       ++++G   +A F+    ++  +    E      S +
Sbjct: 236 VVLNNDDDFSEYLASVTPY----EVFTYGIDHDAQFKAINVEESLQGVKFEFDTPFGSYQ 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N++  +  V    A  +  I+A+    P EG   R           LI
Sbjct: 292 VESPYVGKFNISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEG---RLEVLDPNLPIDLI 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG-----DM---CEMGELSQSFHIDLAE 394
            + Y      M   I     + P  + + I ++G     DM    EMG  S + H D   
Sbjct: 349 ID-YAHTADGMNKLIDA---VKPFVKQKLIFLVGMAGERDMTKTPEMG--SVACHADYVI 402

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +           L      S ++ + +  +G+   I      GD VV+  K 
Sbjct: 403 FTPDNPANDDPKM--LTAELAKGATHSNYIEFEDRAEGIKHAI-DVAEPGDTVVLASKG 458


>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           reducens MI-1]
 gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfotomaculum reducens MI-1]
          Length = 486

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 110/479 (22%), Positives = 179/479 (37%), Gaps = 54/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQAI   +I   P+  + GI  DSR  A    F A+KG   DGH +I +AV  G
Sbjct: 1   MLLKELLQAIPVITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
              VV  T++V   G   +    V D   AL  +          K +++ +TG+ GKTTT
Sbjct: 61  VTAVVYETEIVLPTGVTGV---QVSDSRKALALMADQFYGHPSKKLSMVGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGI-FE 166
             ++       +     IG+ +N I                +   LA+M  +   G+  E
Sbjct: 118 THLIAAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQMLDEGVKGVAME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R     V   +AV T I   HL   + +EE  +AKA++F          +N
Sbjct: 178 VSSHALALNR--VAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFT--TDIQYAIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E LK  S       +Y++G  + AD + +  +  +            + ++   
Sbjct: 234 ADDPAAEELKKISRG----KVYTYGIDQAADIRAKDIQVTARGVSFMASGPWGNHQLNLK 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L        L    DT +   S      G   R+        F ++ + Y
Sbjct: 290 LTGRFNVYNALAAYTTGMALGFGSDTVV---SALEDVPGVAGRFELLDKGQNFAVVVD-Y 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  ++   QI+   +GR I V G     G+  ++    + E+ + Y+   V  
Sbjct: 346 AHTPDGLENILTTARQIT---KGRLITVFGC---GGDRDRTKRPIMGEIAARYSDVPVVT 399

Query: 407 SG-----FHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV--KS 451
           S           ++D +     V   E         + +   I     +GDVVV+  K 
Sbjct: 400 SDNPRTEEPQKIIQDVVEGVNRVIAPEDYLVLVDRREAINKAI-ELAQEGDVVVIAGKG 457


>gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 494

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 164/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----GTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +       + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
 gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
          Length = 483

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 163/454 (35%), Gaps = 47/454 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + GIS DSR + P   F A++G   DG  +I  A+++GA  +V  TD  A +  L +P+
Sbjct: 20  EITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIV--TDCHAVLEDLPVPI 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V +V  +L   A         T++A+TG+ GKT+    +    + +    A IG+   
Sbjct: 78  LRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASIGTVGV 137

Query: 146 -----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          P+ L R+  +     V     E     L + R     VR      
Sbjct: 138 VSPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRL--DGVRLTAGAF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   H+   +G+E+   AK ++F+ L   +    +  DD + + +         + + 
Sbjct: 196 TNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVV-TQARRRVL 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+       + + +    +  +E +++           G     N LM  G+      
Sbjct: 255 TIGRKGQF-ITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMAAGLAIATGV 313

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                  AL       GR +      N     +    Y   P +++    VL  + P  +
Sbjct: 314 SPRKVFSALETLQGAPGRLEFVGKTENNAPVYI---DYAHKPEALE---QVLLSVRPFTQ 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419
           GR I V G     G+  Q     + ++ +      V ++  +            +  A+P
Sbjct: 368 GRLIVVFGC---GGDRDQGKRPLMGKIAAD-KADIVIVTDDNPRTEMPEKIRKDILQAVP 423

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +I +           +    L  GD +++  K 
Sbjct: 424 TAIEI---ADRGEAISYAVELLKAGDTLIIAGKG 454


>gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
 gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
          Length = 484

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 166/476 (34%), Gaps = 52/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ ++   +       VN I+ DSR       F  ++G   DGH FI  A++ G
Sbjct: 1   MLLKELIKDLEIVDVTGDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
              ++V  ++    G   I V  VDD   AL  +             ++ +TG+ GKTTT
Sbjct: 61  TRALLVQREVEVPEG---ITVIRVDDTRYALASVADKFHGHPSGDFNLVGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L    +    IG+ +N I                L  +        V+  + E
Sbjct: 118 TYMIKSILEMYGQKTGLIGTISNKIGDEVLPTDRTTPESYDLQELFGEMVEKQVNSVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R         I V T ++  HL      E   +AK ++F+  +K     +N
Sbjct: 178 VSSHALDLHRVSCS--EFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMCKKG---LIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D  +   +   +       +Y+FG   +AD +     +  +    +V     + ++  +
Sbjct: 233 VDSEYGRKVVENAEC----EVYTFGIDSSADIRAVDIVKHPDSVEFKVITPWFTGDIAVN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +G  +++   ++   K           G+         +  +ID  Y
Sbjct: 289 IPGKFSVYNALGAIGSCALMGIPLEYIQKG---LKNVTVPGRAEVVQTGTDYTIIID--Y 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P S++  ++ +   +P    R I++ G     G+  ++    + E+        V  
Sbjct: 344 AHSPDSLENILTTVKGYAP---ARVISLFGC---GGDRDKTKRPIMGEISGKLADFTVIT 397

Query: 407 SG----FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
           S         A+ + +   I    S             +        D++V+  K 
Sbjct: 398 SDNPRTEEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKG 453


>gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 505

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 99/463 (21%), Positives = 159/463 (34%), Gaps = 54/463 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  +  ISIDSR +     F  ++G    G +F   A ++GA  V+ +      +  L+I
Sbjct: 30  ENEILEISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSE----RVDDLAI 85

Query: 84  PVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A  L    +     SK  +I +TG+ GK+TT  ++   L +       IG
Sbjct: 86  PQLIVKDAGEACGLASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKCGLIG 145

Query: 142 SYNNH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +                 +   L +M  +          SH  E + +   +    
Sbjct: 146 TIVYNDGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCL-YDR 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV T + P HL     +E    AK ++F + +       +N DD + E +  +       
Sbjct: 205 AVFTNLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKIANEFA----P 260

Query: 246 TIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLG 301
            +  F   + AD  F     +       M++     S    V    +G +   N L    
Sbjct: 261 HVLGFSLRQKADNAFYGSIRRSSIRGIIMDISFPDGSTLENVTLPLLGEYNVLNALAASS 320

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D +   K L    P  GR +RY      G   +ID  Y   P +++    VLS
Sbjct: 321 VAWSLDFDAEVIRKGLENCPPVPGRLERYFVE--DGPVCIID--YAHTPDALE---KVLS 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLA 413
            + P   GR   V G     GE  +     L  + + +    V               L 
Sbjct: 374 TVKPLCSGRVWLVFG---HGGERFKENRPILGSIAARFADCIVVTMDNPRSEDPRDIALQ 430

Query: 414 LKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + D +   P S              F       GDVV+V  K 
Sbjct: 431 IADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKG 473


>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
          Length = 503

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 164/488 (33%), Gaps = 59/488 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL+  +   ++       + GI+ DSR + P   F AI+G  YDGH FI  AV  
Sbjct: 1   MVNLKDLIAVLPEKTVTGPVDRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQEAV-- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
                        +     +P   V     AL  LA        ++  ++ +TG+ GKTT
Sbjct: 59  --ARGAAAVVGERAPAVEGVPYVQVPSSRTALGLLASAFYGHPSARLVLVGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFG-----IF 165
           T  ++   L +       IG+ +N IG               L ++   +        + 
Sbjct: 117 TTHLVRWVLEAAGHPTGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHVVM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----- 220
           E+    L   R         + V T +   HL   + +E+ A+AKA +F  L +      
Sbjct: 177 EVSSHALTLQR--VAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGT 234

Query: 221 -----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +N DD +   +  +S A     + ++G  + AD   R            + 
Sbjct: 235 VKPGPKAAVINADDPWGTFMADRSSA----PVITYGIRQAADVTARDVVVEPGGVRFVLG 290

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +   + V     G     N L   G    L  D  T  + L       GR +R      
Sbjct: 291 TRDGEVPVRLRLTGRFNVYNALAAAGAGLALGIDPATVARGLESLPAVPGRLER--IDRG 348

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q F  L+D  Y   P  ++  +S + +++    GR + V G     G+  +     +  +
Sbjct: 349 QPFTVLVD--YAHTPDGLENVLSTVREMAGQ--GRVLCVFGC---GGDRDRGKRPQMGAI 401

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGD 445
            +      V  S         A+ D +   +                    +      GD
Sbjct: 402 AARLADYTVLTSDNPRSEDPEAIIDDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGD 461

Query: 446 VVVV--KS 451
           VVV+  K 
Sbjct: 462 VVVIAGKG 469


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 111/428 (25%), Positives = 185/428 (43%), Gaps = 19/428 (4%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
              FFAIKG ++D H +I   + KG    VV  + +            V++ L AL + A
Sbjct: 6   NTLFFAIKGQNHDAHLYIEELISKGVRYFVV--EYIPEHLYEKANFIIVENSLKALQQTA 63

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           +  R +     + ITGS GKT  KE L   LS          SYN+ +GVPL++  +   
Sbjct: 64  IGYRKKFDFPFVGITGSNGKTIVKEWLNFLLSPNHLIVRNPKSYNSQVGVPLSVLGVEGI 123

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            DFG+FE G+S   E+  L  ++ P   ++T I  AH   F   E     K ++FE    
Sbjct: 124 YDFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEGFPNREAKIKEKIKLFENCTD 183

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              IFL  ++S   LL  K      K  +SF   + A   + + K+ +  + +  +    
Sbjct: 184 ---IFLEKNESIEVLLSNKIQ----KHTWSFS-DETAHLLVTQ-KKENNTTQLTFKNSTT 234

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  V+      +  +N +  +  +  L  D+    K +   +P E    R +        
Sbjct: 235 SFSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVGELYPVEL---RLQAKKGINNC 291

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID+SY+ +  S+K A+  L Q   H   ++  +L D+   G  S++ +  +  +LS  
Sbjct: 292 LVIDDSYSLDYPSLKIALDFLEQQKLHD--KKTIILSDIFNSGIASETLYNQVKNLLSKN 349

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  +   G  +      LP  I   ++ T + L  F   S    + ++VK S S  F+ 
Sbjct: 350 KIGRIITIGEIINKHLKDLPNVIS--FATTQEFLQQFNTQSFQ-NETILVKGSRSFNFHE 406

Query: 460 LINLLLEE 467
           ++ LL E+
Sbjct: 407 IVVLLEEK 414


>gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 810

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 95/447 (21%), Positives = 167/447 (37%), Gaps = 36/447 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91
           DSR I P + F A +G + DG  +I  A++ GA  V    D         ++    + D+
Sbjct: 29  DSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWAVSNQPISDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHI 147
                 LA A    S     I  +TG+ GKT+  + +  A+     KK+ A IG+  N  
Sbjct: 89  KQCAGILANAVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKKSCAIIGTVGNGF 148

Query: 148 GVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
              L              TL R    +      + +S  G  ++  + V    A+ T + 
Sbjct: 149 FGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNGVPFKTAIFTNLT 208

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFG 251
             HL   + + E  + KA +F          +N DD F    +L+ K        IYS+G
Sbjct: 209 RDHLDYHNSMAEYGATKARLFHWQGLEN-AIINSDDEFGSKLILQLKQQYADNLNIYSYG 267

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            ++NAD ++ ++   ++   + +Q    +       +G   AQN    +G +     +  
Sbjct: 268 FNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAIGALCASGFEFQ 327

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A+ ALS   P  G   R  C +N+    ++ + Y   P +++ A++ L +I    E + 
Sbjct: 328 AALNALSQIRPATG---RMDCIINENKPLVVVD-YAHTPDALEKALTTLREIQ-SPESKL 382

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYS 427
             V G         +     +A   S   I  V      +      + D LP   +    
Sbjct: 383 WCVFGCGGNRDSGKRPLMGAVAAQHSDRPI--VTSDNPRMEDPQAIIADILPAVPNAALV 440

Query: 428 E-TMDGLFLFIQSSLVDGDVVVV--KS 451
           +           +     D+V++  K 
Sbjct: 441 QVDRQTAIEQTIAQAAPQDIVLIAGKG 467


>gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
 gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
          Length = 493

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 160/459 (34%), Gaps = 42/459 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   +  I +DSR + P   F AI+G   DG  FI  AV +GA  VV   D      S 
Sbjct: 16  APALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDGEFIPPST 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P  G+ D+   L+ LA     +   K  ++ ITG+ GK+TT  ++    + +      
Sbjct: 76  PVPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVANWRTLLGGKAGV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPH 185
           +G+  N +   L  A         +                + +S  G ++     +   
Sbjct: 136 MGTIGNGLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALPFA 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV T ++  HL     +E   +AK ++ + ++++    +N DD        K  A    
Sbjct: 196 AAVFTNLSRDHLDYHGTMEAYGAAKEQLLQLVDESN-AVINRDDELGAKWLEKYPAAVAF 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIV 303
           ++       ++  QL   +    Q     Q+       V     +G     N+L  +G++
Sbjct: 255 SVNG-PIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSAPLLGRFNVSNVLAAMGVM 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D +  +       P  GR + +      G   L    Y   P +++ A+  L   
Sbjct: 314 LVLGYDFNELLATAPKLQPVTGRMECF----GGGDTPLAVVDYAHTPDALEKALQALR-- 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H  G+   ++G   +     +     +AE  +      V L+  +         +  +
Sbjct: 368 -VHCTGQLWCLIGCGGDRDRGKRPMMAAMAEQYA----DRVILTDDNPRTEEPARIMADM 422

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L     V                    D+++V  K 
Sbjct: 423 VAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKG 461


>gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 494

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 164/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 512

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 174/484 (35%), Gaps = 60/484 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQKGAG 66
           + + +     G +P+   +GIS DSR ++P + F        DG     F+  A+ KGA 
Sbjct: 16  MERFLPPVLEGDLPERL-SGISDDSRKVSPGDLFL----LRMDGPLQEKFLDEAIAKGAA 70

Query: 67  LVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118
           L+V +   + S+          +PV  V+++  A   +A A          ++ +TG+ G
Sbjct: 71  LLVASRRHLPSVLERRQVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNG 130

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDF 162
           KTT+  ++   L         IG+    +G  L+ A                 +   +  
Sbjct: 131 KTTSSFLVRSMLDRSGLRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVA 190

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L + R             T +   HL      E+  +AKA +   +   G+
Sbjct: 191 MSMEVSSHALSQDR--VAGTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGS 248

Query: 223 ---IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD +  +L  +    G + + ++G S+       +     +     + ++G+
Sbjct: 249 LPPAVINADDPYGRILAEQIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGR 308

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G    QN++  +G    L    +     +       GR +R   A   G F
Sbjct: 309 RISVDSTLPGDFNLQNIMGAVGCALALGISPEAVEAGIQSLPGVPGRFER---ANPGGKF 365

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +I + Y     ++K  +S L  ++P   GR I V G     G+  +     + +V    
Sbjct: 366 AVIVD-YAHTDDALKNILSALRPLTP---GRVITVFGC---GGDRDRGKRPRMGKVAGEL 418

Query: 400 NISHVWLSG----FHVLALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVV 449
           +   V  S          + D +   +++         +    +   + S    GD V++
Sbjct: 419 SDIVVVTSDNPRTEDPEFIIDEIEPGLNMTGRSYLREVDRRTAIARAL-SLAQPGDAVLI 477

Query: 450 --KS 451
             K 
Sbjct: 478 AGKG 481


>gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
 gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
          Length = 477

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 168/455 (36%), Gaps = 56/455 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  ++ DSR I     F AI G  +DGH FI  A++ GA  +V+  D+    G   I
Sbjct: 20  DDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDG---I 76

Query: 84  PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               VDD   AL +++  V      K  +I +TG+ GKTTT  M++  L  +      IG
Sbjct: 77  NYIKVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLNSPCTNIG 136

Query: 142 --------------SYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPH 185
                         +    I     + ++ VD  +D  + E     L   R     +   
Sbjct: 137 TNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRL--DGIDFD 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV   ++  H+     +E    AK  +FE  +K      N DD +    KA+      +
Sbjct: 195 VAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR-----FE 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y+F     +DF+    +    +   E+    K+++ V +        N +  +  V++
Sbjct: 247 DTYTFSLENESDFRAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIAAVNL 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +++   KAL  F   E    R+    N     ++ + +   P + +     +     
Sbjct: 303 LGYELEDIAKALESFTGVEA---RFEFVNNDRGINIVID-FAHTPKAFENIYKSV----- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
             + R+IAV G M   G+ ++    ++ ++ +  N+  V  +        + +   I   
Sbjct: 354 PNDKRKIAVYG-M--SGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSG 410

Query: 423 ------HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                      +               GD V++  
Sbjct: 411 IEEANGEFVRIKDRKSAIKHAIEMADKGDFVLLLG 445


>gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
 gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
          Length = 479

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 96/459 (20%), Positives = 175/459 (38%), Gaps = 52/459 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I     
Sbjct: 11  QHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I   + L     +                    +++ +FE     L + R     ++
Sbjct: 127 GVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL--REIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F   L   G   LN D    E +K   H  
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK I + G     D ++ +     +   +      +        IG   A N+L+ +  
Sbjct: 245 NIKFI-TVGT--KGDLEIIRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +    D  I +L      +GR +R          T I   Y   P +++ A++ L  
Sbjct: 302 IHYIGFAFDDVIDSLVEVKAVKGRMERI-------DNTNIFVDYAHTPDALEKALTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           I    + +   V G     G   ++    + ++ +      + ++  +           +
Sbjct: 355 IK-LRDSKLSVVFGC---GGNRDKAKRSLMGQIAAKR-ADTIIITDDNPRHEDPKLIRAE 409

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +       Y+E    +    +  ++L   D+++V  K 
Sbjct: 410 IISGIGKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
 gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
          Length = 480

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 155/427 (36%), Gaps = 36/427 (8%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L++ +      G      V+G +ID+R +AP   F A +G   +G DFI  AVQ 
Sbjct: 1   MRLGSLIEGLDAKPDAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARVNGEDFIPAAVQA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV   +               D+      +LA           +A+TG+ GKT+T 
Sbjct: 61  GATAVVARPEARVEGAIH----IASDNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTV 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
           E+       +    A IG+      V      +                   +    FE 
Sbjct: 117 ELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEA 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226
               L + R  T  +    A  T ++  HL     ++    AK  +F+  +   G   + 
Sbjct: 177 SSHGLAQYR--TEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVW 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +  ++   G++ + S G    A  +L           ++++++GK+ +V   
Sbjct: 235 ADDEWSDKVIQRATKRGLR-VLSVGVQGQA-LRLANRTPTQLGQTLDIEVEGKNYKVNLP 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG + A N L   G+      D    ++ L    P  GR +R           +    Y
Sbjct: 293 LIGAYQAANALTAAGLAIAGGEDAGKVLELLGRVQPVRGRLERAVITKAGAPVYV---DY 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++AAI  L    PH  GR IA+ G     G+        + +V +     HV +
Sbjct: 350 AHTPDGLRAAIEALR---PHTRGRLIALFGA---GGDRDAGKRPQMGKVAADL-ADHVIV 402

Query: 407 SGFHVLA 413
           +  +  +
Sbjct: 403 TDDNPRS 409


>gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 500

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 162/488 (33%), Gaps = 59/488 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL+  +   ++       + GI+ DSR + P   F AI+G  YDGH FI  AV  
Sbjct: 1   MVNLQDLIAVLPDKTVTGPAGRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAV-- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
                         +    +P   V     AL  LA        +   ++ +TG+ GKTT
Sbjct: 59  --ARGAAAVVGERPLALEGVPYVQVPSSRLALGLLASAFYGHPSASLVMVGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFGIF 165
           T  ++   L +       IG+ +N I                   L  A     +   + 
Sbjct: 117 TTHLIRWVLEAGGHPTGLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMRDEGMTHAVM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----- 220
           E+    L   R         + V T +   HL   + +E+ A+AKA +F  L +      
Sbjct: 177 EVSSHALALQR--VAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGT 234

Query: 221 -----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +N DD + E + A+S+A     + ++G ++ AD   R+ +         + 
Sbjct: 235 TKPGPKAAVINADDPWGEFMAARSNA----PVVTYGLNRPADITARQVEVEPGGIRFILV 290

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  V     G     N L   G    L  D  T  + L       GR +R      
Sbjct: 291 SPKGEAPVRLRLTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLER--IDRG 348

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q F  ++D  Y   P  +   +  + +++    GR I V G     G+  +     +  +
Sbjct: 349 QPFAVIVD--YAHTPDGLDNVLRSVRELAGQ--GRVICVFGC---GGDRDRGKRPQMGAI 401

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGD 445
            +      V  S         A+ D +   +                           GD
Sbjct: 402 SARLADYTVLTSDNPRSEDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGD 461

Query: 446 VVVV--KS 451
           VVV+  K 
Sbjct: 462 VVVIAGKG 469


>gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
 gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
          Length = 503

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 164/473 (34%), Gaps = 44/473 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+   + G      + G+S+DSR +     FFA+ G    G D I +A++ GA  ++ 
Sbjct: 12  LAALGLRAKGGR-DATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILT 70

Query: 71  NTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +          +   S  +   +D  GAL   A         T+IA+TG+ GKT+     
Sbjct: 71  DAQGAQIAAKELADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFA 130

Query: 127 TIA----------LSSIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLG 173
                        L +     A      +    P+TL R              +  S  G
Sbjct: 131 RQIWIEMELAAVNLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHG 190

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFF 232
             +     V    A  T     HL      E    AK  +F   L + G   +N DDS  
Sbjct: 191 LDQRRLDGVVLAAAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKG 250

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             +   + + G++TI + G+  +A  +L   +  S    +    Q  S     + IG   
Sbjct: 251 PEVVQIAESRGLETI-TVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQ 309

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+L+   +V     D + A   L       GR +      N G   +    Y   P  
Sbjct: 310 ADNVLLAAALVIAAGGDPEEAFDTLPYLTTVRGRMQHAATRRNGGSVFV---DYAHTPD- 365

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-- 410
             A  + L  + PH  G+ IA++G   +     +          ++ N   V+++  +  
Sbjct: 366 --AVATALMAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQ----AAVQNADMVFVTDDNPR 419

Query: 411 --------VLALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVV--KS 451
                      +  AL  +      E  D     ++   +L  GD +++  K 
Sbjct: 420 SEDPRVIRAAVMAGALENAAGKSVIEVGDRAEAILRGIDALGPGDALLIAGKG 472


>gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus RF122]
 gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus RF122]
          Length = 494

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F     ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 494

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 161/488 (32%), Gaps = 63/488 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    I       + GI  DSR + P + F  + G   DGH F   A  KG
Sbjct: 1   MNLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAGKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV   +      + +P   V D   A+     A   +  S+  +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   ++        IG+     G             L L R   D      +  + E
Sbjct: 116 TYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R          A+ T +   HL     +EE   AK   F  L         
Sbjct: 176 VSSHALEQGR--VKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDES 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 LN DD        ++ A     + ++G  ++AD +       ++ +   V    
Sbjct: 234 ARKYAVLNADDDASAYFAKQTAA----EVITYGLGEDADVRASNISITAQGTSFHVDTFR 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S ++    +G     N +  +    +    ++      +      G   R         
Sbjct: 290 GSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIK---NSLESVPGVDGRVEVVDEGQP 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           + +I + Y   P  ++  +  +++ +   EGR + V G     G+  ++    + ++ + 
Sbjct: 347 YAVIVD-YAHTPDGLENVLRTVNEFA---EGRVLTVFGC---GGDRDRTKRPIMGKIAAK 399

Query: 399 YNIS-------------HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           Y+                + L       ++D +    +    +    +   I      GD
Sbjct: 400 YSDVVFVTSDNPRTEDPELILKDIEAGLVEDGVATESYKLIVDRRKAIEKAI-EMASPGD 458

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 459 VVLIAGKG 466


>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR]
 gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
          Length = 495

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/485 (21%), Positives = 175/485 (36%), Gaps = 56/485 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ I G  +       + G++ DSR + P  AF  I+G   DGH F  +AV+ 
Sbjct: 1   MRRLTDLLKNIYGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +++    +             V+D   AL  +  A       K  II +TG+ GKTT
Sbjct: 61  GATVIIAEKPVTVPSSVTV---VTVEDTREALAYMGAAFYDYPGDKLNIIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIF 165
           T  ++   L    K    IG+  N I                +   LA M    VD+ + 
Sbjct: 118 TTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMVDAGVDYAVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------ 219
           E+    L   R          A+ T I   HL     ++   +AK ++F  L K      
Sbjct: 178 EVSSHALELNR--VAGCEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKSR 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DDS  +     +H      + ++G    AD +  K    S+           
Sbjct: 236 NKYGIINIDDSKGQSFLEVTHG----QVITYGIQSAADVRAEKIDLRSDGVSFTAVTPRG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+++  +  G     N L    + S L  ++   +   ++   K   G+  +    Q F 
Sbjct: 292 SVDLKLNLTGLFNVYNSLAA--VASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQPFA 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+D  Y   P  ++   +VLS      +GR I V G     G+  ++    + EV +  
Sbjct: 350 VLVD--YAHTPDGLE---NVLSAAREFTKGRLITVFGC---GGDRDRTKRPIMGEVSAKL 401

Query: 400 NISHVWLSG--------FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   V  S           +  +++ +   I        E          +    GDVVV
Sbjct: 402 SDFTVLTSDNPRSESPAEILRDIEEGVKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVV 461

Query: 449 V--KS 451
           +  K 
Sbjct: 462 IAGKG 466


>gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia montanensis]
          Length = 479

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/459 (21%), Positives = 175/459 (38%), Gaps = 52/459 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+ FI  A+ KGA LV+ +      I     
Sbjct: 11  QHKVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKKNIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V DV  AL++       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTHSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I     L     +                    +++ +FE     L + R     ++
Sbjct: 127 GVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL--REIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F   L   G   LN D    E +K   H  
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK I + G  K  D ++ +     +   +      +        IG   A N+L+ +  
Sbjct: 245 NIKFI-TVG--KKGDLEITRINCSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +       D  I +L      +GR +R          T I   Y   P +++ A++ L  
Sbjct: 302 MHYTGFAFDDVIDSLVEVKAVKGRMERI-------DNTNIFVDYAHTPDALEKALTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           I  H + +   V G     G   ++    + ++ +      + ++  +           +
Sbjct: 355 IKLH-DSKLSVVFGC---GGNRDKAKRSLMGQMAAKR-ADTIIITDDNPRNEDPKLIRAE 409

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +       Y+E    +    +  ++L   D+++V  K 
Sbjct: 410 IISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 11379]
 gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
 gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
          Length = 491

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 167/483 (34%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-VN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    +  G++ D+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLMAGQDHHALRGTPDRTDITAGVTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+        +L  +    V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDEQAPPLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK-TYACIGSYNNHIGVPL-----------------TLARMPVDVD 161
           T+   M    L   ++     IG+  + IG  L                  L     D  
Sbjct: 121 TSVSYMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G   L  + +G +          + V T +   HL +   +E    AK  +F+GL +  
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR- 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++     L    + ++    +AD++       +  S   +   G+  
Sbjct: 240 -AVVNADDPLGAGIRK----LMAGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R +     G  ++
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQIP---GGTSV 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +P S+   ++ +   +    GR I V G     G+   +   ++  +   ++ 
Sbjct: 352 IVD-YAHSPDSLNKVLTTIRGFA---RGRVITVFGC---GGDRDTTKRAEMGAIAGTHSD 404

Query: 402 SHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFL------FIQSSLVDGDVVVV-- 449
             V  S         A+ D +   I    +   + L           +     D+V++  
Sbjct: 405 LCVLTSDNPRYEDPEAILDQIAEGIASTGTP-FERLTDRRPAIAAALAEAGPDDIVLIAG 463

Query: 450 KSS 452
           K S
Sbjct: 464 KGS 466


>gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
 gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
          Length = 494

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 161/457 (35%), Gaps = 46/457 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              + GI++DSR +     F A+ G    G  F   A+  GA  ++ +      +  L  
Sbjct: 21  DPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVAQLLR 80

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---- 135
             ++ +  V+D   AL   A         T++A+TG+ GKT+    +      +      
Sbjct: 81  ESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWVELGHQAVN 140

Query: 136 --TYACIGSY----NNHIGVPLTLA-----RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             T    GS+    N+    P+TL           V     E     L E R L   V  
Sbjct: 141 LGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL-EQRRL-DGVHL 198

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL      E   +AKA +F   L   G   +N DD   E ++A + A G
Sbjct: 199 AAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRAVAAARG 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + S G+    D  L   +  +    M      K  +   + IG   A+N+L+  G+V
Sbjct: 259 -HEVISVGRGLG-DLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENILLACGLV 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       L       G   R + A  +     +   Y   P ++  AI  L   
Sbjct: 317 IASGEDPQAVFDTLPHLQTVRG---RMQLAATRENGATVFVDYAHTPDAVATAIKALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH  GR +A++G     G+   +    + +  +  N   V ++  +           A+
Sbjct: 372 -PHVLGRLVAIVGA---GGDRDAAKRPLMGQ-AAQNNADLVIVTDDNPRSEDPAVIRAAV 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           K   P ++ V          L    +L  GD +++  
Sbjct: 427 KGGAPDAMEVG---DRAEAILRGVDALGAGDALLICG 460


>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 485

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 169/476 (35%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L + ++   I    +  +  I+ +S+ I     FFAIKG + DGH FI  A++K
Sbjct: 1   MKTIKQLCKGVKILQIVGNEEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
            A ++V     +  I    +    V D   A+ ++A         K  ++ +TG+ GKTT
Sbjct: 61  KARVIVCQ--QLPEILPKEVTFLKVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLA-RMPVDVDFGIFE--L 167
              +L     + K     I +   +I              +TL  RM   V+ G+    +
Sbjct: 119 IATLLYHLFRNTKHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTHCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G        +     + T +   HL       E  + K + F+ L+K      N 
Sbjct: 179 EVSSHGIAMHRIEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTLKKDAFALTNI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A      Y++     ADF+    +       + +       E+  H 
Sbjct: 239 DDKNGNFMLQNTQAHK----YNYALRTYADFKANILENAFSGLVLRI----GQQEIWTHL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L       +L  D +   K +S   P  G   R++  ++ G  T+I + Y 
Sbjct: 291 IGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSG---RFQYFISAGNITVIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +  I    +     V       G   +     +A + +  +   ++ S
Sbjct: 347 HTPDALQNVLETIKSIKAPSQHLLTLV----GCGGNRDKGKRPIMANIATTMSDKVIFTS 402

Query: 408 G----FHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +   ++  +                  +    GD++++  K 
Sbjct: 403 DNPREEDPQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKG 458


>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 498

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 186/480 (38%), Gaps = 47/480 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D++  I+  +I       VN IS DSR +   + F AIKG   DGH++I   +++G
Sbjct: 1   MNILDIIDNIKVKTIYGNLPESVNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     ++ + ++ V    ++    + +A      S    +A+TG+ GKT+   
Sbjct: 61  AALVIASRYENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSIST 120

Query: 125 MLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--- 179
           ++   L ++ ++ A IG+  +  +   P+       DV     ++G      I+ L    
Sbjct: 121 LVHNMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEA 180

Query: 180 ----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----GLEKTGTIFL 225
                     + V   +A+ T +   HL     ++  A  K+ +F      L +     L
Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVL 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSM 281
           N DDS+++++   S  L  + I        ADF     KQ  E    ++   +     + 
Sbjct: 241 NKDDSYYKVI---SKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGTF 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E   + IG  M  N+L  L  V +    V+  +  L       G   R     +     +
Sbjct: 298 ECTTNYIGDFMVSNVLAALIAVWVKGYSVEQLVAILPKLGALYG---RMEIIGDDLPIDI 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + +   P   +  +    ++    +G+R  ++  M    ++S+     + +++S    
Sbjct: 355 ISD-FAHTPDGYEKLLEATREMR---KGKRTLLVTGMGGGRDISKG--PLIGDIISE--A 406

Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVV--KS 451
            +V ++        V  L  ++ + +     E +         I      GDVV++  K 
Sbjct: 407 DYVVITTDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSEPGDVVILASKG 466


>gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
 gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
          Length = 501

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 168/465 (36%), Gaps = 53/465 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+   ++  +A+    +    QG    +  DSR +   +AF A  G   DG  ++  A+
Sbjct: 3   TPIQILNNAAEAVA--WLRSRVQG---DLQTDSRKVKAGDAFVAWPGAATDGRAYVGKAL 57

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGK 119
           ++GA  V+V  D + +       +  +  +  A  L      A    +  ++A+TG+ GK
Sbjct: 58  EQGAAAVLVEADGLQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGK 117

Query: 120 TTTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMP--------------VDVD 161
           TTT   L  ALS +    +   A +G+    +   L    M                D  
Sbjct: 118 TTTAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQG 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEK 219
                +  S +G +       +  +A+ T     HL     ++    AKA++F+  GL  
Sbjct: 178 LAACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPA 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD+    L A+     +  ++S      A  Q +      E     V   G 
Sbjct: 238 ---AVVNIDDAHGARLWARLQGRAM-DVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGH 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+ +    +G +   N+L  L  +  L   ++ A++A +   P  GR ++      +   
Sbjct: 294 SLRMNTRLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIV----KPGQ 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+   Y   P +++ A+  L   +   +G+   V G   +     +          +  
Sbjct: 350 PLVAVDYAHTPDALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQ----AAQA 405

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   V+++  +                SE  + +   I + +  G
Sbjct: 406 HADGVFVTSDNPR--------------SEVPESIIDQILAGMQAG 436


>gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
 gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
          Length = 479

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 174/459 (37%), Gaps = 52/459 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I     
Sbjct: 11  QHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKSIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I   + L     +                    +++ +FE     L + R     ++
Sbjct: 127 GVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL--REIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F   L   G   LN D    + +K   H  
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIDFVKDYLHNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK I + G     D ++ +     +   +      +        IG   A N+L+ +  
Sbjct: 245 NIKFI-TVGT--KGDLEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +    D  I +L      +GR +R          T I   Y   P +++  ++ L  
Sbjct: 302 IHYIGFAFDDVIDSLVEVKAVKGRMERI-------DNTNIFVDYAHTPDALEKVLTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           I    + +   V G     G   ++    + ++ +      + ++  +           +
Sbjct: 355 IK-LRDSKLSVVFGC---GGNRDKAKRSLMGQIAAKR-ADTIIITDDNPRHEDPKLIRAE 409

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +       Y+E    +    +  ++L   D+++V  K 
Sbjct: 410 IISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 486

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 165/477 (34%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L  +    +       V+ I  DSR I   + F AI+G   +GH+FI  A+  G
Sbjct: 1   MLLKEILYKVALEVVHGSTDVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFIDKAIALG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V   D + +     I    V D   AL  L          K  ++ +TG+ GKTT 
Sbjct: 61  AKAIVC--DTLPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARMPVDVDFGIFEL 167
             +L             + +                 + + +   L +M V+       +
Sbjct: 119 ASLLYQLFKKAGFKVGLLSTVKILVDEIEHKATHTTPDSLTINYYLDKM-VEAGCQYCFM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  ++    V T ++  HL       +    K   F+ L K      N 
Sbjct: 178 EVSSHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKKSFFDNLPKNAFALSNI 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A       S+     AD++    +         + L+    EV    
Sbjct: 238 DDKNGAVMMQNTKARK----LSYALKTYADYKAIIIENQLSG----LLLKINEQEVWVRL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G+   L  +    ++ LS      G   R++  +++   T I + Y 
Sbjct: 290 IGTFNAYNLLAIYGVAIELGIEKLEVLRLLSELESVSG---RFQFIVSKQNITAIVD-YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +S ++ I    E + I ++G     G+  ++    +A + S  +     L+
Sbjct: 346 HTPDALENVLSTINDIRTRNE-QLITIVGC---GGDRDKTKRPIMANIASQMS-DKAILT 400

Query: 408 GFHVLA------LKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
             +         + +       V+Y +                     D++++  K 
Sbjct: 401 SDNPRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGKG 457


>gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 161/481 (33%), Gaps = 49/481 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   +   I   +        ++G+S DSR+    + +FA+ G H DGH F+  A+  GA
Sbjct: 4   SLSAITGDINIEARNGKTDALISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
             V+    +  S+    I    V +   +++ +A A          +I +TG+ GK++T 
Sbjct: 64  RAVI--HQVPLSLYHPEIAYLQVTNSRISMSPVAAAFYDHPSRVLKVIGVTGTDGKSSTV 121

Query: 124 EMLTIALSSIKKTYACIGSYN---------NHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
             L   L+ +      + +           NH       A         + E G SH   
Sbjct: 122 SFLHQLLTGMGLKCGFLSTVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAGCSHA-V 180

Query: 175 IRFLTHLVRP----------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI 223
           I   +H + P            AVIT I+  HL     +E+    KA +F    +  G  
Sbjct: 181 IESTSHGLSPKNNRLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD    L    +      + YS   ++ AD++ R  ++        +        V
Sbjct: 241 VINIDDKNHNLFAGTASGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPKGEARV 300

Query: 284 VHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
             +  G     N+L     +  +   +  T           +G  +       Q F  ++
Sbjct: 301 DLNVAGRFNVDNILAASAAVCELEGVEPKTLEPLFPGLKAVKG--RMVPVDEGQAFQVIV 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y   P + +    +   I P   GR  A+       GE        L  +   Y   
Sbjct: 359 D--YAHTPGAFR---RLFPAIRPLVRGRLFALFSS---AGERDLEKRPVLGSIADEY-CD 409

Query: 403 HVWLS-----GFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVK 450
            + L+     G + +AL + +            +   E          S +   D +++ 
Sbjct: 410 VIVLADEDPRGENPMALLEEVASGCRNKTKGKSLFLIENRKEAMRHAFSMMKKDDCILLL 469

Query: 451 S 451
            
Sbjct: 470 G 470


>gi|242315788|ref|ZP_04814804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106b]
 gi|242139027|gb|EES25429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106b]
          Length = 339

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 139/334 (41%), Gaps = 9/334 (2%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +  A  G++NN +G+PLTL R+       + ELGM+H GE   L  +  P +A++     
Sbjct: 4   RALATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQR 63

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H    + +E +A   A +   L   G      DD++  + +  +       I  F    
Sbjct: 64  EHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHG 120

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            A           + S + +   G  ++V  + +G H A+N L            +    
Sbjct: 121 AAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIK 180

Query: 315 KALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             L  F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S      R+ 
Sbjct: 181 VGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP----RVL 236

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V+G+M E+G+   +FH ++        I  ++  G       DA       H+ +    +
Sbjct: 237 VIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDAAALV 295

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + ++      ++VK S      R+++ L  E
Sbjct: 296 AALLAANFGAHATLLVKGSRFMKMERVVDALANE 329


>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 485

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 175/457 (38%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG
Sbjct: 75  SYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IG 132

Query: 142 SYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +  A                 +   +++ I E+  SH  EI     ++   
Sbjct: 133 TIEYKIGDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVS-SHSLEIGR-VEVLDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+      +N DD + + L  +   +   
Sbjct: 191 YALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRLYDE-FIVDNP 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G  +N D +       S+  +++V+ + +  +V    +G     N L  +GI   
Sbjct: 250 EIISYGI-ENGDLE----GDYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGIALK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I  
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALDC--GQDYKVIVD--YAHTPDALVNVIVAARNIK- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
               R I + G   +     +     +AE LS      V L+  +            +K 
Sbjct: 360 -NGSRIITIFGCGGDRDRTKRPIMAKVAEDLS----DVVILTSDNPRTESPEQIFDDVKK 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +S    +    +       +     D++++  K 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4]
 gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella loihica PV-4]
          Length = 488

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 172/455 (37%), Gaps = 45/455 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------L 81
           + +++DSR I     F A+ G   DG D++  A+ +GA   +++TD  A  G       L
Sbjct: 20  SHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNGL 79

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            I  F +   L AL    +    R +  +I +TG+ GKT+  +++      + K  A +G
Sbjct: 80  RIYFFQLQRQLSALAS-QLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGLGKPAAVMG 138

Query: 142 SYNNHIGV-----------PLTLARMPVDVDF---GIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N +             P+T+ R   D D     +  + +S  G ++     V   +A
Sbjct: 139 TLGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFDVA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     ++   +AK  +F          +N DD             G+   
Sbjct: 199 VFTNLSRDHLDYHGSMDAYGAAKQRLFRF-SSLSHGLINLDDPVGRQWIQDKRCKGL-VG 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S    + A    ++ KQ S+     +       ++    +G     N++  LG + +  
Sbjct: 257 FSIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYLSG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +  +S   P  GR +R+     Q   TL+ + Y   P +++ A+  L     H 
Sbjct: 317 YAMAQLLTQVSSLKPVAGRMERFTT---QEGVTLVVD-YAHTPDAIEQALRALRG---HC 369

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---AL 418
            G+   V G   +  +  +      AE     N   V ++  +  +      ++D    L
Sbjct: 370 RGKLWCVFGCGGDRDKGKRPLMARAAEE----NADCVMVTSDNARSEDPMAIIQDVLAGL 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                + +   +GD++++  K 
Sbjct: 426 NKPQIALTQVDRQQAIREVVTLASNGDLILLAGKG 460


>gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
 gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
          Length = 483

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 165/478 (34%), Gaps = 56/478 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL  +            + G++ DSR + P   F  I+G   DGHD+ + A + G
Sbjct: 1   MRLYELLDGLDA--ARPDRDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +               D   A   +          +  ++ +TG+ GKTT 
Sbjct: 59  AAAILCERAIGLENE------IVCHDTHYAYGIVCGNWYGNPARRLRLVGVTGTNGKTTV 112

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             M+   L S       IG+ +N I                +   LARM       +   
Sbjct: 113 SYMVKHILESAGHQTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVME 172

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH  + + L  L R      T +   HL     +E    AK ++F   +      +N 
Sbjct: 173 CSSHALDQQRLAGL-RFASVGFTNLTQDHLDYHGDMESYYHAKKKLFSMCDA---AAVNM 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD++ E L A+     I  + +F   S  ADF  +  +   + S   +  +G    V   
Sbjct: 229 DDAYGERLAAEVR--HICPVTTFSTVSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLP 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N +    +   L   ++ A + L+      G   R         + +I + Y
Sbjct: 287 IPGDFSVANAMTAAVMCMALGLTLEQAAQGLNTCQGVVG---RIEVLPTGTDYVVIRD-Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P  ++  I+ + + +    GR + + G     G   ++    +AE+++  +   V L
Sbjct: 343 AHSPDGLEKIITTMKKFA---RGRVVTLFGC---AGNRDRTKRKKMAEIVARLS-DFVIL 395

Query: 407 SG------FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +  ++DA P  +                  +        DV+++  K 
Sbjct: 396 TSDNPRDEDEMQIIEDAKPGLLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKG 453


>gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 494

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 165/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +   S    ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLSA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F     ++  +    +      + +V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida W619]
 gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619]
          Length = 496

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 163/463 (35%), Gaps = 49/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G   DG D I  A+ +GA  V         +    +
Sbjct: 16  DPLIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDALARGAAAVAYEQQGTHVLPITDV 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +          +  ++ +TG+ GKT+  +++  AL ++ +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDALGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 136 TLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHALEQGR--VAALEFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
           IAV+T ++  HL     +E   +AKA++F          +N DD F   L A        
Sbjct: 194 IAVMTNLSRDHLDYHGSMEAYEAAKAKLFAW-PGLRCQVVNLDDGFGRRLAADFARRPSV 252

Query: 245 ----KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + S+  ++ +A    R+ K   +     +        +    +G     NML  
Sbjct: 253 DHIETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQGERTLRSQLLGRFNLSNMLAA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  L   +D  +K         GR +R       G   L+   Y   P +++  +  
Sbjct: 313 VATLMALDYSLDEILKVTPQLQGPVGRMQRL----GGGEKPLVVVDYAHTPDALEKVLQA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L    PH  G+ + + G   +     +    ++AE L+      V ++  +         
Sbjct: 369 LR---PHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLA----DRVLVTDDNPRTEDPQAI 421

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++    R   V +          + +S    DV+V+  K 
Sbjct: 422 FNDIRPGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKG 464


>gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
          Length = 479

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 175/458 (38%), Gaps = 50/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I     
Sbjct: 11  QHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I   +       +                    +++ +FE     L + R     ++
Sbjct: 127 GVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL--REIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F   L   G   LN D    E +K   H  
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK I + G     D ++ +     +   +      +        IG   A N+L+ +  
Sbjct: 245 NIKFI-TVGT--KGDLEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +    D  I +L      +GR +R          T I   Y   P +++ A++ L  
Sbjct: 302 IHYIGFAFDDVIDSLVEVKAVKGRMERI-------DNTNIFVDYAHTPDALEKALTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDAL 418
           I    + +   V G     G   ++    + ++ +    + +             ++ A+
Sbjct: 355 IK-LRDSKLSVVFGC---GGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAAI 410

Query: 419 PRSIH-VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
              I    Y+E    +    +  ++L   D+++V  K 
Sbjct: 411 ISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 769

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 149/414 (35%), Gaps = 37/414 (8%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            +  +LL   + +     G + +  + GI  DSR ++  + F    G   DGH ++  A 
Sbjct: 241 MSLAELLDESKVVPVSVYGDL-EVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEAD 299

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
           ++GA  VV + ++          +  V+D    L  LA            +I I G+ GK
Sbjct: 300 KRGAVAVVASKEIDIEETLGCKALVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNGK 359

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-----------------RMPVDVDF 162
           TTT  ++     ++      + +   ++     L                   +    + 
Sbjct: 360 TTTAYLIRAMYEAMGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEA 419

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKT 220
            + E     L   R   + V   IAV T +   H+      E+  +AKA++F  +     
Sbjct: 420 VVMEASSHGLALGR--CNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDR 477

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +N DD       A         + +F  ++K+AD    K++    ++ + VQ    
Sbjct: 478 HRKIVNIDDPNAPFFIA--QGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKG 535

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  F
Sbjct: 536 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPG---RCELIDEEQAF 592

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +I + Y   P ++   +  + ++      R I V G   E     +     +A
Sbjct: 593 GVIVD-YAHTPDALSRLLDSVRELGA---RRIITVFGCAGESDRGKRPIMTKIA 642


>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 485

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 175/457 (38%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG
Sbjct: 75  SYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IG 132

Query: 142 SYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +  A                 +   +++ I E+  SH  EI     ++   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVS-SHSLEIGR-VEVLDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+      +N DD + + L  +   +   
Sbjct: 191 YALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRLYDE-FIVDNP 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G  +N D +       S+  +++V+ + +  +V    +G     N L  +GI   
Sbjct: 250 EIISYGI-ENGDLE----GDYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGIALK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I  
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALDC--GQDYKVIVD--YAHTPDALVNVIVAARNIK- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
               R I + G   +     +     +AE LS      V L+  +            +K 
Sbjct: 360 -NGSRIITIFGCGGDRDRTKRPIMAKVAEDLS----DVVILTSDNPRTESPEQIFDDVKK 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +S    +    +       +     D++++  K 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
 gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
          Length = 499

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/474 (21%), Positives = 163/474 (34%), Gaps = 55/474 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL  I G    I     +     DSR++ P + F  + G H DGH FI   ++ G   ++
Sbjct: 17  LLTDIGGDWNKIPADCTLKS---DSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLL 73

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT 127
           +       +  L IP   V DV  A+  +A A       K  + A+TG+ GK+TT  M+ 
Sbjct: 74  IQR----PVSGLPIPWIQVTDVRAAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVR 129

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLG 173
             L +       +G+     G    LA              +  VD       +  S  G
Sbjct: 130 SILQNCGVKCGLLGTIVYDDGSKSVLADRTTPEGSEIQQFLKNMVDNGCQACSMECSSHG 189

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFF 232
             +          AV T + P HL     +E    AKA +F    K G     N      
Sbjct: 190 IAQGRLSGCLYDGAVFTNLTPEHLDFHGTMENYYEAKAALFRKYLKPGAAVAPNAASEHG 249

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291
             L A+          ++     A  Q    K   + S  ++   G+ M  VH    G H
Sbjct: 250 RRLAAE-----FPQAMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKMGRVHIPLSGRH 304

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L    +      D    +  L++     GR +R    L+ G   +ID  Y     
Sbjct: 305 NVENALGAAAVCLAEGCDEKKVVAGLALMPQVPGRMER--LNLDNGVRVVID--YAHTAD 360

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
           S+KA +  L    P  EGR +++ G     G    + H  L    +      ++++    
Sbjct: 361 SLKALLETLR---PLTEGRLVSLFGH----GGDRFAGHRSLLGRAAAQKADRIFVTMDNP 413

Query: 408 -GFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVVVV--KS 451
                L + + +   I    ++         D            GD++V+  K 
Sbjct: 414 RTEDPLKIAEQIVAGIEEVRADGCWSIELPRDAAICKALDWCRRGDLLVLSGKG 467


>gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O11]
 gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O46]
          Length = 494

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L   +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLTTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
 gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
          Length = 494

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 162/478 (33%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F    + +G
Sbjct: 1   MNASTLFEKIRVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             ++VV +          +    V + L   +L    +      + T   +TG+ GKT+ 
Sbjct: 61  CQIIVVKSKQEVEGD---VTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    I    T                +  VD       + 
Sbjct: 118 ATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F E L + +       I+++G   +A F+     +  +    E+     +  V 
Sbjct: 238 LNNDDAFSEYLASVTPY----EIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQ 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V       +T ++A+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEG---RLEVLDPNLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VKPFVKRKLIFLVG-MA--GERDLTKTPEMGTVA--CRADYV 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            L        +V + +  +G+   I       D VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTSELAKGATHDNYVEFEDRAEGIRHAI-EVAEPEDTVVLASKG 458


>gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
 gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
          Length = 492

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 165/479 (34%), Gaps = 53/479 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +LL  +    +GI P    +G++ DSR + P + F A  G   DG  +I  A+ +
Sbjct: 1   MTTPRELLDQLAA--MGIQP----SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALAR 54

Query: 64  GAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  V+          +++ + ++PV  +  + G L    V        ++IAITG+ GK
Sbjct: 55  GAVAVLWQPSADFSWDSTLATANLPVAALRPLAGPLAHA-VYGHPSEGLSLIAITGTNGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD---VDFGIF 165
           TT  + +     +  K  A IG+        L           TL R   D    +    
Sbjct: 114 TTISQCIAQ---AYPKPCAIIGTLGAGFPDSLIETGFTTPEATTLMRYLADFRARNAAAC 170

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L  S +G      +  R  +A+ T     HL     +E  A AK ++F    +  T  +
Sbjct: 171 ALEASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLF-HWPRLRTAII 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGKS 280
           N DD F   L  ++ A+    +  +   +      A  +              + L    
Sbjct: 230 NLDDEFGLNLMRETTAM---RVLGYAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGR 286

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    +G +   N+L    ++             LS   P  GR +R           
Sbjct: 287 VAVDTTLVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERL----GGNGEP 342

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+   Y   P +++ A++ L  ++    GR   V G     G+  +     +  +     
Sbjct: 343 LVVVDYAHTPDALENALTALRDVATTRAGRLSVVFGC---GGDRDKGKRPQMGALAERL- 398

Query: 401 ISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V ++  +  +      + +                          D DV+++  K 
Sbjct: 399 ADRVLVTNDNPRSEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKG 457


>gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL S4-171]
          Length = 440

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 150/430 (34%), Gaps = 55/430 (12%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAI 113
           F   A + GA  VV    +      ++IPV  V D   A+  L             ++ I
Sbjct: 1   FAKKAEELGAVAVVAEKPV-----DVTIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGI 55

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLAR-----MP 157
           TG+ GKTT   ++   +    +    IG+    I              LTL       + 
Sbjct: 56  TGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLL 115

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             V   + E+    L + R   +     +AV   ++  HL     +EE A AK+ +F  L
Sbjct: 116 RGVSTAVMEVSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 173

Query: 218 EKT------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
             +          LN DD     ++  + A     + +FG  +NADF+    +  S  S 
Sbjct: 174 GNSYHASNPKIAVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGST 229

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +       ++    IG     N+L  +     L   ++ AI  +      +G   R+ 
Sbjct: 230 FNLTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKG---RFE 286

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  F +I + Y+  P  +   ++VL  I      R   V+G     G+  +     
Sbjct: 287 LVNAGQDFPVIVD-YSHTPDGL---LNVLQTIDEFANNRVFVVVGC---GGDRDKGKRPQ 339

Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +A++   Y  + V+ S           +  +   +P S      E       +  S    
Sbjct: 340 MAKIAVQYATNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEA 399

Query: 444 GDVVVV--KS 451
           GDV+++  K 
Sbjct: 400 GDVILIAGKG 409


>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 482

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/455 (20%), Positives = 150/455 (32%), Gaps = 52/455 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I IDSR +     F A+ G   DG  FI  AV +GA   +V           +IP   VD
Sbjct: 20  ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGA-AYIVCRHNEVEYCGSAIP-IVVD 77

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D    L +LA            II +TG+ GKTT   +L     +       IG+     
Sbjct: 78  DPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTIAYRW 137

Query: 148 GV---------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                               LA+M VD    +F    SH  + R +  +      + T +
Sbjct: 138 PGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGI-SFKGVIFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEI-FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL     ++E   AKA + FE   K   +  + D+ +   L        +  I  FG
Sbjct: 197 TQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKL-----VPEIIGFG 251

Query: 252 KSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                         +          +++  + K  E+    +G H A+N+L    I   L
Sbjct: 252 FKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLAVQAISLQL 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +        F    GR +R         F      Y   P ++   I+VLS +   
Sbjct: 312 GLAPED-FCCFEKFTGVPGRLERIVNKKQLDIFV----DYAHTPDAL---INVLSALRDV 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDAL 418
           G  R I V G     G   ++    + + ++  +   V  S           +  +   L
Sbjct: 364 GFKRIITVFGC---GGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGL 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +      +         +  GD ++V  K 
Sbjct: 421 KKAKQIITEPDREKAIRQAIELVSPGDALLVAGKG 455


>gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
          Length = 477

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/465 (17%), Positives = 158/465 (33%), Gaps = 50/465 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            ++       ++ I  DSR I   + F AIKG   +GHD+I  A+  GA  ++       
Sbjct: 4   EAVHGTTDIAISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIICEELPSN 63

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +    +    V D   AL  L+            ++ +TG+ GKTT   +L        
Sbjct: 64  IVNG--VTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAG 121

Query: 135 KTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFL 178
                + +    +      A                      +F   E+    + + R  
Sbjct: 122 YKVGLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKR-- 179

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  ++    V T ++  HL   +   E    K   F+GL K      N DD    ++   
Sbjct: 180 TEALQFVGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDGLSKDAFAITNIDDKNGAIMLQN 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A       S+     AD++ +  +         + L+    EV    IG   A N+L 
Sbjct: 240 TKAKK----LSYALKSYADYKAQILENQLSG----LLLKINDNEVWVKLIGSFNAYNLLA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+   L  D   A++ LS      G   R++  ++    T I + Y   P +++  + 
Sbjct: 292 IYGVAVELGIDKMEALRLLSELESVSG---RFQFIVSDLKITAIVD-YAHTPDALENVLK 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            +  I    E + I V+G     G+  ++    +A + S  +   ++ S      +   +
Sbjct: 348 TIEDIRTKNE-QLITVVGC---GGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETI 403

Query: 415 KDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            + + + +     +                      D++++  K 
Sbjct: 404 IEEMEKGVEPQNFKKTVSILDRKQAIKTACQLANPNDIILIAGKG 448


>gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 496

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 162/474 (34%), Gaps = 68/474 (14%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--- 81
             +  +++DSR +   + F A+KG   DG  FI +A+++GA +++   D       L   
Sbjct: 19  TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSK 78

Query: 82  ----------SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                        V  V ++   L+++  A       K T+  ITG+ GKTTT ++L   
Sbjct: 79  FAKFNLDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 130 LSSIKKTYACIGSYNNH---------------IGVPLTLAR-MPVDVDFGIFELGMSHLG 173
            + +    A +G+  N                I +   LA  + +  DF   E+    L 
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLA 198

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +  F    +   +A+ T ++  HL   + +EE A AK  +F  L  T    +N DD    
Sbjct: 199 Q--FRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELS-TKAQVINADDEIGR 255

Query: 234 LLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +     +    +       D      +    K   + + +  +    + E+    I
Sbjct: 256 EWLTQ-----LPNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLI 310

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L     +  L  D+   IK         G   R  C        +I + Y  
Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQDLIKTSPNLVGVAG---RMECITAPNKPMVIVD-YAH 366

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++ A+        H EG    + G   +     +     +AE L+      V  + 
Sbjct: 367 TPDALEKALQA---ARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLT----DKVIATD 419

Query: 409 FH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +  +     +   + +    +             DV+++  K 
Sbjct: 420 DNPRTEDNQKIMADIVKGFSKPQQIIH--NREEAIKTAIEQAKATDVILIAGKG 471


>gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
 gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
          Length = 551

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 169/484 (34%), Gaps = 56/484 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                + N +++DSR   P+  F A  G +  G  F+  A+ +GA  VV +      + +
Sbjct: 24  GAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTS----QVLPN 79

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +P   V +   A   L+        S+  ++ +TG+ GKTT   M    ++       
Sbjct: 80  CPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGKTTVSWMTRALMAKSGYRTG 139

Query: 139 CIGSYNN----------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +G+                    +        +         EL    L + R     +
Sbjct: 140 LLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSR--AAAL 197

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A++T I   HL           AKA I + ++  GTI L+ +D     L +   A 
Sbjct: 198 PLDCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAASLASLVPAE 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               +  +G + +A+   +   +    +   VQ QG+ M++    +G H  +N L  L  
Sbjct: 258 C--RLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAALAA 315

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                    +  +AL  F P  GR +R  C   + F   +D  Y   P ++  A+  L  
Sbjct: 316 GLAWKVPFLSMAEALEEFRPVPGRMER--CTWGEPFDIFVD--YAHTPDALSRALCSLRG 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---GFHVLALKDALP 419
           ++    GR I V G     G+   +    L    S  +++ V        +   +   + 
Sbjct: 372 LT---RGRLICVFGA---GGDRDATKRPLLGRAASQADVAIVTSDNPRSENPEKIIQQIC 425

Query: 420 RSIHVHYSETMDG-----LFLFIQSSLVDGDVVVV--KS--S----NSCGF----YRLIN 462
             +     E +                + GD++++  K   S     +        R++ 
Sbjct: 426 DGVPAQQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGASHLPFDDRRVVR 485

Query: 463 LLLE 466
            LLE
Sbjct: 486 ELLE 489


>gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
 gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
          Length = 494

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 163/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +        ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLPA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F  +  ++  +    +      +  V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++  IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
 gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
          Length = 462

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/456 (20%), Positives = 173/456 (37%), Gaps = 50/456 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G++IDSR I     F A++G   DGH +I  A+ KGA  V+   + +       I  
Sbjct: 2   EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC--EELPEELKAGITY 59

Query: 86  FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D   A+ K+         SK  +I +TG+ GKTT   +L             + + 
Sbjct: 60  IQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGLVSTV 119

Query: 144 NNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N+I             P+TL R+  +       +   E+    + + R     ++    
Sbjct: 120 CNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRI--SGLKFAGG 177

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK + F+ L K      N DD    ++   + +     +
Sbjct: 178 IFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDKNGLVMTQNTRS----KV 233

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y++     +DF+ +  +   E   ++      + E+    IG   A N+L   G   +L 
Sbjct: 234 YTYSLRSLSDFKGKVLESHFEGMLLDFN----NHELAVRFIGKFNAYNLLAVFGTAVLLG 289

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +  + ALS  HP  GR    R    +G+  ++D  Y   P ++   ++ +  +   G
Sbjct: 290 KKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVD--YAHTPDALVNVLNAIHGV-LEG 344

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHY 426
           +G+ I V+G     G   +     +A+  +  +   +  S        +D +   +    
Sbjct: 345 KGKVITVVGA---GGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLAGLD 401

Query: 427 SETMDGLF------LFIQSSL---VDGDVVVV--KS 451
            + M            I+++      GDV++V  K 
Sbjct: 402 KDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 437


>gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
 gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
          Length = 501

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 168/465 (36%), Gaps = 53/465 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+   ++  +A+    +    QG    +  DSR +   +AF A  G   DG  ++  A+
Sbjct: 3   TPIQILNNAAEAVA--WLRSRVQG---DLQTDSRKVKAGDAFVAWPGAATDGRAYVGKAL 57

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGK 119
           ++GA  ++V  D + +       +  +  +  A  L      A    +  ++A+TG+ GK
Sbjct: 58  EQGAAALLVEADGLQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGK 117

Query: 120 TTTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMP--------------VDVD 161
           TTT   L  ALS +    +   A +G+    +   L    M                D  
Sbjct: 118 TTTAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQG 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEK 219
                +  S +G +       +  +A+ T     HL     ++    AKA++F+  GL  
Sbjct: 178 LAACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPA 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD+    L A+     +  ++S      A  Q +      E     V   G 
Sbjct: 238 ---AVVNIDDAHGARLWARLQGRAM-DVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGH 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+ +    +G +   N+L  L  +  L   ++ A++A +   P  GR ++      +   
Sbjct: 294 SLRMNTRLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIV----KPGQ 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+   Y   P +++ A+  L   +   +G+   V G   +     +          +  
Sbjct: 350 PLVAVDYAHTPDALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQ----AAQA 405

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   V+++  +                SE  + +   I + +  G
Sbjct: 406 HADGVFVTSDNPR--------------SEVPESIIDQILAGMQAG 436


>gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 495

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 175/474 (36%), Gaps = 46/474 (9%)

Query: 6   TFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +L L A+         +  + G+S+DSR +     F A+ G    G DFI +A+++G
Sbjct: 9   TLAELGLTAMGAQ------EAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQG 62

Query: 65  AGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++ +          I +    +    D   AL   A           +A+TG+ GKT
Sbjct: 63  AAAILTDQKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGS----------YNNHIGVPLTLARMPVD-VDFGIFELGM 169
           +         + +    A +G+            +    P+TL R+  D    GI  + M
Sbjct: 123 SVASFTRQIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAM 182

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
              SH  E R L  + +   A  T     HL   +  E   +AKA +F   L + G   +
Sbjct: 183 EASSHGLEQRRLDGM-QLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N +D+ F+ +   +   G + + S G+ +NA  ++   +       +  +   ++ EV  
Sbjct: 242 NRNDARFQDISRLAEKRG-QEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKL 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A+N+LM  G+     AD +     L       G   R   A  +     I   
Sbjct: 301 PLIGGFQAENVLMAAGLAIASGADANEIFGVLPQLKTVRG---RMELAATRKNGASIFVD 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++  A   L    PH  GR I V G   +  +  +          +  +   ++
Sbjct: 358 YAHTPDALATACRALR---PHVLGRLIVVFGAGGDRDKGKRPLMGQ----AAEAHADVIF 410

Query: 406 LSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +       ++ +   I            L    +L  GDV+++  K 
Sbjct: 411 VTDDNPRSEDPAVIRREVMDGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKG 464


>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 504

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/486 (19%), Positives = 167/486 (34%), Gaps = 56/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+ ++           V GI+ DSR I     F A+ G   DG+ FI  AV+ GA 
Sbjct: 5   LNNLLRDVEILQTAGPLDVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGAS 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+  T   +   +    V  V D   A+ ++A        +   +I +TG+ GKTTT  
Sbjct: 65  AVITETVGFSECPAT---VVRVSDSRKAMARMAANYYGHPCAGLKMIGVTGTNGKTTTTL 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELG 168
           +L   L     +   +G+     G     A M                   V   + E+ 
Sbjct: 122 LLESILKRGGHSVGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMREDGVTHVVMEVS 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNY 227
              L + R          AV T ++  HL     +E+  +AK+ +F E L       +N 
Sbjct: 182 SHALAQGR--VAECAFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVING 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD +   L  K+        +S+   S+ A   ++  +  +      +     SM++   
Sbjct: 240 DDPYGARLVEKAGPGA----WSYSTGSEAARAHVKSARLTASGIEARLCGPDGSMDIHSP 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     +        + ++     +GR +R   +   GF  ++D  Y
Sbjct: 296 LIGRLNLYNILAAVTASLAMGVPEAAIREGVAGLTSVDGRLQRV-ASPGTGFEVVVD--Y 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--------- 397
              P +M+ ++  L +++    GR + V G   +     +     +A  L          
Sbjct: 353 AHTPDAMEKSLGCLREMTA---GRLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDN 409

Query: 398 ------LYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                    I      V  SG   +   +    +                 +    GD V
Sbjct: 410 PRSEVPERIIDEIEPGVRASGLERILAAEPGNGARGYIVEVDRKSAIEKALAWARPGDTV 469

Query: 448 VV--KS 451
            +  K 
Sbjct: 470 FIGGKG 475


>gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Rickettsia typhi]
          Length = 492

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 174/455 (38%), Gaps = 50/455 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+S +S+++   E FFA+KG + DG+DFI  A+  GA LV+        I      V 
Sbjct: 14  INGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK----VI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +I++TG+ GK++    +      ++K  A IG+    
Sbjct: 70  YVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGLE 129

Query: 147 IGVPLTLAR--------------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           I     +                          +++  FE     L + R      + +I
Sbjct: 130 IFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRL--GKTKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T+ +  HL      E    AK ++F + L  +G   LN D    E +K       +K
Sbjct: 188 VSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVK 247

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I + G  K  D Q+ K         ++         +    IG   A N+L+    +  
Sbjct: 248 FI-TVG--KKGDVQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYY 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D  I+ALS   P +GR +R          T I   Y+  P +++ A+  L  I P
Sbjct: 305 TGFKFDEIIEALSKVKPVKGRMERI-------DGTNIFVDYSHTPDALEKALIELQNIKP 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS 421
           H  G+   + G     G+  ++    + ++ + +  + +             ++  + R 
Sbjct: 358 H-GGKLSVIFGC---GGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRG 413

Query: 422 IHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
           I        E+ +    +  ++L   D++++  K 
Sbjct: 414 IGTATYTEIESREEAIKYGINNLKQDDILLIAGKG 448


>gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
          Length = 494

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 165/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +   S    ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLSA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F     ++  +    +      + +V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V      ++T IKA+    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNELIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVA--CRADYV 401

Query: 405 WLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +           +    + H +Y   +               GD VV+  K 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKG 458


>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
          Length = 430

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/441 (23%), Positives = 197/441 (44%), Gaps = 29/441 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +   IDSR +   + F  +KG   DGH FI  A++ GA  V+V  D+V         +  
Sbjct: 10  HNFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVVDFPKE---KIIK 66

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+ VL  +   A      +    I ITGS GKTTTKE L   L +  KT+    + N  I
Sbjct: 67  VNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLAYFKTFRNEMNLNTEI 126

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PL++     + +  I E G+   G++ FL+      +A+IT +  +HL     +E +A
Sbjct: 127 GIPLSILNNYNNEETVILEEGLRKKGDLEFLSRYFNLDVAIITNVGASHLEFLDSLETVA 186

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K +I   ++K G + +N D S  + L  K          +FG     D  L+ ++   
Sbjct: 187 EEKMKITSNMDK-GVLIINGDYSLLKELAPKHLNR-----LTFGTKDENDAVLKSFEYNE 240

Query: 268 EQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +    ++  + + V  +   ++ ++  ++ L    +L   +D  +    +F+     
Sbjct: 241 NHTTTFYARILQEDLMVTLN---HYWSEGQILDLLSGLLLLRFIDLPVDPYYLFN-INIP 296

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R++  + +G   ++++SYNA+  S K+A + + + +      +I ++G++ E+G+ S+
Sbjct: 297 QDRFQT-IKRGNLLIVNDSYNASYESFKSAFNSIKKWNLSP---KIIIMGEIKELGKYSE 352

Query: 387 SFHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +HI +  +    NI   ++               +  V + + +  +   I ++     
Sbjct: 353 EYHIKV--ITEALNIFDRIYFYDPQENFTY---LSNDKVTFFKELKKIDEIISNTTKG-- 405

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           V+ +K SN+ G  +    L E
Sbjct: 406 VIYIKGSNTTGINK---YLKE 423


>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
           DP4]
 gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 168/474 (35%), Gaps = 49/474 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  LL    G     +PQ     I  DSR + P + F A+ G   DG  FI  AV +GA
Sbjct: 7   TFDTLL----GRVAATLPQ-----IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTK 123
            +VV   D +  +   +  V   DD   AL  L  A    +     ++ +TG+ GKTT  
Sbjct: 58  TMVVCRADGLQHLPEAAFAVAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTIT 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL---------------G 168
            +L    +S  +    +G+ +      +  A +       + E+                
Sbjct: 118 YLLEHLFASAGRRCGVLGTVSYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEV 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNY 227
            SH  +   +  + R   AV+T +   HL     +E   +AKA +F  L + +    +N 
Sbjct: 178 SSHALDQERVAGI-RFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNA 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +   L A         +     S          +  +    + +  +G++ EV    
Sbjct: 237 DDPWGRRLLADLPGAVGFALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H A N+L    +   L       +  L  F    GR +R     ++G    +D  Y 
Sbjct: 297 VGAHNASNLLAVQAVGLGLGLSPADFVH-LENFTGVPGRLER--ITNDRGLDVFVD--YA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++VL  +   G  R + V G     G   ++    +   ++ +    V  S
Sbjct: 352 HTPDAL---VNVLRALRDVGFTRIVTVFGC---GGNRDRTKRPLMGAAVAAHADVAVLTS 405

Query: 408 G--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +  +K  L  +  V                L  GD ++V  K 
Sbjct: 406 DNPRHEDPLAIMEDVKPGLAGAREVVAEADRRKAIALALEMLRPGDALLVAGKG 459


>gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
          Length = 526

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 17/335 (5%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIF 165
              +I +TGS GKT+ K  L   L           S+N  +GV  T+   +    +  I 
Sbjct: 181 GIKVIGVTGSYGKTSVKFYLQTLLQEKYNVLVTPESFNTPMGVVRTIRGSLRSTHEIFIC 240

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G  H+G+I+ +  +V P   +IT+I P HL  F  +E I + K E+ + L   G +FL
Sbjct: 241 EMGARHVGDIKEICDIVHPDYGIITSIGPQHLETFFNMENIKNTKFELADALPDDGILFL 300

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           N D+ +   ++ K+     K ++ F +     +           +   +     + E   
Sbjct: 301 NGDNEY---IQDKAKDYKNK-VFYFAQGSGNGYCASDIAVSQLGTEFTMTAPDGTTENFQ 356

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N+   +   + L   +      +    P   R +        G  T+ID+
Sbjct: 357 MRLIGAHNVINVAGAIAAANTLGIPLSDLKIPVRRIQPVPHRMQMRE----HGQVTIIDD 412

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YN+NP   KAA+  L+      +G RI +   M E+G+  + ++       +     ++
Sbjct: 413 AYNSNPVGSKAAVETLAMF----DGIRILITPGMVELGDKEKEYNYKFGTYAADC-CDYI 467

Query: 405 WLSG-FHVLALKDA-LPRSIHVHYSETMDGLFLFI 437
            L G  H   +K+  L +       ++ D L   +
Sbjct: 468 LLVGKKHTEPIKEGVLSKGFTPQKCQSFDKLEEAL 502


>gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
 gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
          Length = 485

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/476 (21%), Positives = 162/476 (34%), Gaps = 44/476 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L    DLL+      +   P   + G++ DSR +AP   F A+ G   DG  FI  A
Sbjct: 1   MSALH-LSDLLR----RDVASDP--IITGVTSDSRKVAPGALFVALPGTAADGRAFIPQA 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + +GA  V+  TD   S      PV     DV  A    A         T +A+TG+ GK
Sbjct: 54  LAQGAAAVLAPTDTPDSAA----PVLVTSGDVRRAYAIAARGFYGAQPRTCVAVTGTNGK 109

Query: 120 TTTKEMLTIALSSIKKTYACIGSYN---------NHIGVPLTLARMPVDVDFGIFELG-- 168
           T+         + +    A +G+             +  P   +    +    + EL   
Sbjct: 110 TSVAAFCRQIWAGLGHKSASMGTLGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAK 169

Query: 169 --------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                    S  G  +     V    A  T +   HL     +++  +AK  +FE L   
Sbjct: 170 DVTHVAVEASSHGIDQRRLDGVALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPR 229

Query: 221 G-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G T  LN D   +    A S   G+  +   G+    D  L   +   E   + + ++G 
Sbjct: 230 GRTAVLNADSDAYSAFAAASIMAGLG-VMGVGERGR-DLALIGRQATPEGQRLTLDVRGD 287

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +++    G   A N L+  G+        D  I AL      +GR +R      +G  
Sbjct: 288 VRDILLPLAGAFQASNALVAAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRGEV 347

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +    Y   P  ++  ++ L    PH  GR I V G   +     +    ++A  L+  
Sbjct: 348 YV---DYAHTPDGLETVLTALR---PHATGRLIVVFGAGGDRDRGKRPLMGEIAGRLADV 401

Query: 400 NI--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            I       S                                 + DGDVVV+  K 
Sbjct: 402 AIVTDDNPRSEDPASIRAQVRAGCPEALEIGDRRAAIEAAIEMMRDGDVVVIAGKG 457


>gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Azoarcus sp. BH72]
 gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 501

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/397 (20%), Positives = 147/397 (37%), Gaps = 33/397 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI+ DSR + P   F A  G   DG  +I  A+++GA  V+         G L +P F V
Sbjct: 21  GITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELPVPGFAV 80

Query: 89  DDVL---GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             +    GAL    +  R  ++  +  +TG+ GKTT  + L  AL  +      +G+  +
Sbjct: 81  PRLRELAGALAH-EIYDRPSARLWMAGVTGTNGKTTVTQWLARALGELGSRCGIVGTLGS 139

Query: 146 HIGVPL---------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                L               TLAR+  +       + +S +G  +   + V   +AV T
Sbjct: 140 GFPDQLSASLNTTPDALELHATLARLLGE-GAAAAAMEVSSIGLDQGRVNGVEFDVAVFT 198

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     ++  A AKA +F  L       +N DD+F      +  A G   +  +
Sbjct: 199 NLTRDHLDYHRTMDAYAEAKARLFA-LPGISRAVINLDDAFGLTQARRLVAAGQVDVIGY 257

Query: 251 G-KSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + NAD           + +         +   G+  ++    +      N+L  +G 
Sbjct: 258 TCVASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNLLAVIGA 317

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +    V+ A+  +   +P EGR +            LI   Y   P ++   +  +  
Sbjct: 318 LVMRGVAVEEALAVVGRLNPPEGRMQLV----GGIGEPLIVIDYAHTPDALAKVLEAVRG 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 GR + V G   +     +    ++A  L+  
Sbjct: 374 TVRSRGGRLVCVFGCGGDRDPGKRPLMGEVARQLADR 410


>gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
 gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
          Length = 503

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 170/492 (34%), Gaps = 65/492 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   L   +            +N +  DSR++   + F A  G   DG  FI  A
Sbjct: 1   MTP--TLSQLQLQLG---------VPLNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQA 49

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVG 118
           + +GA  V+ +        + ++P  G+ D+         A+         +I +TG+ G
Sbjct: 50  ILQGAAAVIWDAHNFVWDKAWTVPNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNG 109

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDF 162
           KT+T   +  AL    K  A IG+  N     L  +                 +      
Sbjct: 110 KTSTCHWIAQALGDAGKKCALIGTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQA 169

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L + R   + VR  +A++T ++  HL     +E  A+ K  +F+       
Sbjct: 170 AAMEVSSHALAQGR--VNGVRFDVALLTNLSRDHLDYHGDMESYAATKRRLFDWQSLN-Y 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----------DFQLRKWKQCSEQSWM 272
             +N DD+F   L  +     ++ +  +G +  A                 +  S    +
Sbjct: 227 AVINLDDAFGAELALQLVDKTVE-VIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKV 285

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           EV+    + ++    +G     N+L  LG++ +    +D A+ +L+   P  GR +    
Sbjct: 286 EVRSSWGAAQLSTQMVGRFNVSNLLGALGVLLVSDVTLDAAVASLNAVQPVTGRMQ---- 341

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHI 390
            L      L+   Y   P +++  +  L + +   +  G+ I V G   +     ++   
Sbjct: 342 KLGGNDQPLVIVDYAHTPDALEKVLLALCEAAQGTKAGGQLICVFGCGGDRDRGKRAMMG 401

Query: 391 DLAEVLSLYNI---------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +AE  +   I             + G  +  + +                      +  
Sbjct: 402 RVAEKFADRCIVTSDNPRSEDAQQIIGEVIAGMNEG-----RHEVISDRADAIGHAIAMA 456

Query: 442 VDGDVVVV--KS 451
              D+V++  K 
Sbjct: 457 GRADIVLIAGKG 468


>gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp.
           P1]
          Length = 352

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 122/314 (38%), Gaps = 33/314 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++     G   G+  +     V  +  DSR   P   F A+ G   DGHDF   AV
Sbjct: 45  MTLAEVAAVTGGTLHGVSDEQAAVPVTAVEFDSRKAGPGALFLALPGERADGHDFAAGAV 104

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVAARLR 105
            +GA  V+          ++  P   V D                VL AL +LA      
Sbjct: 105 TRGATGVLAGR--PVDAPAVVAPPAEVRDAHTYLGSVDPDGHGAAVLAALGRLARHVLGA 162

Query: 106 -SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                ++ +TGS GKT+TK++L   L+   +T A   S+NN +G P T  R        +
Sbjct: 163 LPGLAVVGVTGSAGKTSTKDLLAAVLAPQGRTVAPPESFNNELGTPWTALRADAATRHLV 222

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK----- 219
            E      G I  L  +  P I V+  +  AHL  F     IA+AK E+ E L       
Sbjct: 223 LEFSARGAGHIAALCAVAPPRIGVVLNVGSAHLGEFGSRAGIAAAKGELVEALPPGDLPG 282

Query: 220 --TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   LN DD     +++++ A     + +FG+S  AD +       + +    +   
Sbjct: 283 GRGGVAVLNADDELVLAMRSRTPA----RVVTFGRSACADVRAEDETLDAGRPSFRLVTP 338

Query: 278 GKSMEVVHHGIGYH 291
             S  V    +G H
Sbjct: 339 AGSAPVSLRLVGAH 352


>gi|228933512|ref|ZP_04096365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826241|gb|EEM72021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 270

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 126/281 (44%), Gaps = 14/281 (4%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +HL      +EIA AK EI +GL + G    N D+     L ++++       
Sbjct: 1   MITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKTSSVNC 56

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG+    D      +        ++      ++      G H   N ++ + +     
Sbjct: 57  KTFGEKDTNDLFPTNVQLDEYGVHFKLNH--TKIQYDVPLHGKHNIFNTIVGIAVGQFYK 114

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +   +A            R++    +  FT+I++++NA+P+SMKAAI  L +++ + 
Sbjct: 115 VPTEKIQEA---LQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAYK 171

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---V 424
             ++I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ H   V
Sbjct: 172 --KKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 229

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +    +   +   +   DVV++K S      +++   +
Sbjct: 230 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEQIVQKWM 270


>gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 494

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 156/458 (34%), Gaps = 40/458 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   +  I +DSR + P   F AI+G   DG  FI  AV +GA  +V   D       L
Sbjct: 17  APALSLTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPPL 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +IP  G+ D+   L++LA     +   K  ++ ITG+ GK+TT  ++    + +      
Sbjct: 77  TIPCIGIRDLPARLSELAGYFYEQPANKLDLVGITGTNGKSTTALLVANWRTLLGGKAGV 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPH 185
           +G+  N +   L  A         +                + +S  G ++     +   
Sbjct: 137 MGTIGNGLFGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAALPFA 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGI 244
            AV T ++  HL     +E   +AK E+ + L       +N DD      L A   A+  
Sbjct: 197 AAVFTNLSRDHLDYHGTMEAYGAAKEELLK-LVDEPCAVINADDQLGRQWLAAYPGAVAF 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                           +      +    ++     +  +    +G     N+L  +G + 
Sbjct: 256 SVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLAAMGAML 315

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  D +  +       P  GR + +      G   L    Y   P +++ A+  L    
Sbjct: 316 VLGYDFNVLLATAPQLQPVTGRMECF----GGGNAPLAVVDYAHTPDALEKALQALR--- 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415
            H EG+   ++G   +     +     +AE     +   V L+  +         +  + 
Sbjct: 369 VHCEGQLWCLVGCGGDRDRGKRPMMAAMAE----QHADRVILTDDNPRTEEPAQIMADMV 424

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L     V                    D+++V  K 
Sbjct: 425 AGLRDPAAVQVEHDRVKAIALALGQASKQDIILVAGKG 462


>gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
          Length = 501

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 163/457 (35%), Gaps = 45/457 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +          +    
Sbjct: 24  ITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTDAAGARIAADVLAQSD 83

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             +   +D    L   A          ++ +TG+ GKT+           +      IG+
Sbjct: 84  AALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASFCRQIWCELGYEAVNIGT 143

Query: 143 YN----------NHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFLTHLVRPHIA 187
                       +    P+TL R+  + +         E     L E R L   V    A
Sbjct: 144 TGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASSHGL-EQRRL-DGVHLVAA 201

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             +  +  HL   +  +E  +AKA +F   L + G   +N DD     +   + A G + 
Sbjct: 202 GFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDPKGPAMAEIARARG-QD 260

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+   +D  ++  +       +  + +G++ ++  + +G    +N+ +  G+V   
Sbjct: 261 LITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGFQGENVALAAGLVIAA 320

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            +D D     L       G   R + A  +     +   Y   P ++  A+S L    PH
Sbjct: 321 GSDPDRVFDTLRHMKTVRG---RMQLAATRRNGAAVFVDYAHTPDAVSTALSALR---PH 374

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
             GR +A++G     G+   +    +    +  N   V ++          A++ A+   
Sbjct: 375 VMGRLVAIIGA---GGDRDTAKRPLMGAAAAQ-NADLVIVTDDNPRSEDPAAIRAAVMAG 430

Query: 422 IH-------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +                   L     L  GD +++  
Sbjct: 431 VRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICG 467


>gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 501

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 173/478 (36%), Gaps = 53/478 (11%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             D+L+ +     +G      +  IS+ S+ I     F A KG   DGH+FI +A+Q GA
Sbjct: 5   LKDILKKVDVLKIVGKNTSKLIERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
             +V   + + S     I    V D + AL  ++         K  +I ITG+ GKT+  
Sbjct: 65  HTIVC--EKIPSSIHKKITYVLVPDSMNALGIISSNFYDHPTKKIKLIGITGTNGKTSVA 122

Query: 124 EMLTIALSSIK---------------KTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFEL 167
            +L    S +                K Y    +  N I +   L   +     +   E+
Sbjct: 123 TILHQLFSKMGEKNILISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEV 182

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + +  L+     V T I   HL      +   S K   FE L K     +N 
Sbjct: 183 S-SHGIHQKRIAGLL-FQGGVFTNITHDHLDYHESFDHYLSTKKFFFENLSKKAFALINS 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +        +   Y +G  KNA+F+++  K+    S + +       ++    
Sbjct: 241 DDENSYKIIKDI----LSKTYFYGLKKNANFKIQILKESIHGSQLLID----GHKIFTKL 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L       +L    D  +K +    P  GR +++    N G   ++D  Y 
Sbjct: 293 IGTFNVYNLLAGYATAILLGKKKDNILKKIKNIKPIRGRFEQF--ISNSGIRVIVD--YA 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI------ 401
            NP  +K  ++ L +I  + +G+ I V+G         +S    +       +I      
Sbjct: 349 HNPDGLKTVLNTLKKIK-NDDGKLICVIGCGGNRDIKKRSLMGKIVYETCDVSIFTSDNP 407

Query: 402 ----SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   L    +   K ++ +     + +      +   IQ      D++++  K 
Sbjct: 408 REEDREKILV--DMKNFKSSIYKDKESILTFVNRKKAIETAIQ-IAKKKDIILIAGKG 462


>gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
 gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
          Length = 492

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 167/477 (35%), Gaps = 45/477 (9%)

Query: 4   LWTFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T   L L A QG          +  +++DSR +     F A+ G    G +FI +A++
Sbjct: 1   MTTLTALGLTAAQGR------DATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALR 54

Query: 63  KGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  V+ +          + +    V   +D    L + A          ++A+TG+ G
Sbjct: 55  MGAAAVLTDAAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNG 114

Query: 119 KTTTKEMLTIALSSIK------KTYACIGSYNNHI----GVPLTLARMPVD---VDFGIF 165
           KT+           +        T    G++   +      P+TL R+  +         
Sbjct: 115 KTSVSSFCRQIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHV 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIF 224
            +  S  G  +     V    A  T     HL      E   +AK  +F   L + G   
Sbjct: 175 AMEASSHGLDQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD    ++ A     G + +   G+S +A  +L   +  +    +    QG+     
Sbjct: 235 VNLDDPKGPVVAAICTQRG-QEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHAR 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A+N+L+  G+V    AD      ALS      G   R   A  +     +  
Sbjct: 294 LALIGGFQAENVLLAAGLVIAAGADPLDVFAALSQLGTVRG---RMELAATRANGAAVFV 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++ A+  L    PH  GR +A++G   +     +     +    + +  S +
Sbjct: 351 DYAHTPDAVETALKALR---PHVMGRIVAIIGAGGDRDSTKRPL---MGAAAAEFADSVI 404

Query: 405 WLSG----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSS--LVDGDVVVV--KS 451
                       +++ A+          SE  D     ++    L  GD +++  K 
Sbjct: 405 VTDDNPRSEDPASIRAAVLAGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKG 461


>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 491

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 182/463 (39%), Gaps = 58/463 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  + +DSR +     FF I G   DGHDF   A++KG   +V   D+     ++++
Sbjct: 23  DQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVAIVAEKDL-----NVAV 77

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V     A+  ++ A      SK  +I +TG+ GKTTT  ++   L   +K    IG
Sbjct: 78  PVIKVTSSKRAMAIISSAFYDYPSSKLHLIGVTGTNGKTTTTHLIEKILRDAEKNTGIIG 137

Query: 142 SY-----------NNHIGVPLTLAR-MPVDVDFGI----FELGMSHLGEIRFLTHLVRPH 185
           +            NN     L L +     V  G+     E+    L   R   H    +
Sbjct: 138 TMYMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNVVTMEVSSHALELGR--VHGTHFN 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239
           +AV T ++  HL     +E  A AK  +F  L      +      LN DD  F+LL+  +
Sbjct: 196 VAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDKSQPVAVLNRDDDTFDLLETMT 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I S+G   NAD +  K +   E +   + +  +S  V     G     N L  
Sbjct: 256 AA----PIISYGIKGNADLKASKIQLHEEGTSFNMSISNESCSVSMKMAGTFSVYNALAA 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +    +    ++LS      GR +R      + F  ++D  Y   P S+K  +  
Sbjct: 312 AAAAYVSGIPLQAIGESLSNMDGVAGRFERVELE--EDFHVIVD--YAHTPDSLKNVLET 367

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           + + +   +G+   V+G   +  +  +     +AE LS      V+L+  +  +      
Sbjct: 368 IKEFA---KGKVSVVVGCGGDRDKTKRPKMAAIAEELS----DFVYLTSDNPRSEDPVSI 420

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++  +  S +    E  D ++  I+ +    +V+++  K 
Sbjct: 421 LKDMESGMKGSSYKVIVERRDAIYEAIRQA-KKDEVILIAGKG 462


>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
 gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
          Length = 494

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 173/477 (36%), Gaps = 43/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL A+ G          V+GI  +S      + F  I G   DG +F   A+  G
Sbjct: 1   MKLRELLAAVDGVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFWQSALASG 60

Query: 65  AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           A   +V+ + V          V    ++  A  +++         +  ++ +TG+ GKTT
Sbjct: 61  AVAAIVSPEAVQKNPPTPESLVISASNMNKACAQISAAFYGYPGQQLRMLGVTGTNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIF 165
           T  ++   L+ +    A +G+           A                 +    +FG+ 
Sbjct: 121 TTHLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQAVDAGCEFGVM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R         +AV T +   HL     +E+   AKA +F      G   +
Sbjct: 181 EVSSHALAQDR--VFGCPFEVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPDYLQGRAII 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD + + L      L  + ++++   + +AD ++             +      +   
Sbjct: 239 NADDEYGQRLIT---GLSKERVWTYSVNNHHADLRMSDLNYQPIGVSGILHTPKGDVAFS 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G +  +N+L  +  V  L  D+     A+S F    GR +R + + N+    ++D 
Sbjct: 296 SPLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDVSVIVD- 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S+    ++L  +     GR I V G     G+  ++    + ++ +      V
Sbjct: 355 -YAHTPDSLG---NLLKSVRAFIPGRIICVFGC---GGDRDRTKRPKMGKIAAELADIAV 407

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLF-----LFIQSSL---VDGDVVVV--KS 451
             S        + +   I     +T+  +        I++++     GD V++  K 
Sbjct: 408 VTSDNPRTEDPERIIEDILAGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKG 464


>gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 495

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 162/480 (33%), Gaps = 53/480 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + L + I+   +    +  +  I+ DSR+      F A KG   D H F    V +
Sbjct: 1   MLDANVLFEKIRVKQVIGTLEKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTT 121
           G  +++V+     +     +    V D L   +L    +      +     +TG+ GKT+
Sbjct: 61  GCQVIIVSHQQEITGD---VTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTS 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLA-------RMPVDVDFGIF 165
              M+      + K  A +G+    I           P T++        +  + +    
Sbjct: 118 IATMIHHIYRKLGKGSAYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTL 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----G 221
           E+    L   R     V   +A+ + +   HL     +E    AK+ +F  L +      
Sbjct: 178 EVSSHGLSLGRL--RGVDFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEK 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD+F E L + +       ++++G + +A F      +  +      +      
Sbjct: 236 FVVLNKDDAFSEYLASVTP----FEVFTYGVTNDAQFTAHHINESLQGVQFTFKTPEGEF 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N++  +  V      ++  + A+    P EG   R           L
Sbjct: 292 QVKSPYVGLFNVSNIMAAMIAVWSKGIALNDIVDAVENLEPVEG---RLEVLDPSLPIDL 348

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y      M   I     + P  + + I + G M   GE   +   ++  V      
Sbjct: 349 IID-YAHTADGMDKLIDA---VKPFAKQKLIFLCG-MA--GERDLTKTPEMGRVA--CRA 399

Query: 402 SHVWLSGFHVLALK------DALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
            +V  +  +           +    + H +Y   E          +    GD VV+  K 
Sbjct: 400 DYVIFTPDNPANDAPKTLTQELAKGATHDNYIEFEDRAEGIRHAINIAEPGDTVVLASKG 459


>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
 gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
          Length = 511

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 169/480 (35%), Gaps = 44/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +   HDLL  +   SI  +P     +  V GIS +S S  P + F  + G   DG +F  
Sbjct: 15  MMKLHDLLNNVP--SISSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFWQ 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDD--VLGALNKLAVAARLRSKATIIAITG 115
            A++ GA   +++              V  VDD   + A    A       +  +I +TG
Sbjct: 73  SAMEVGATAAMISPQAAEKFPPTDDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMIGVTG 132

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVD 159
           + GKTTT  ++   LS  +K  A IG+           A                 +  +
Sbjct: 133 TNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEAVSAN 192

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + E+    L + R         ++V T +   HL     +E+  +AK  +F     
Sbjct: 193 NEYCVMEVSSHALAQGR--VKQCPFKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPDYL 250

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD + + L     +L  + ++S+      ADF  R            +    
Sbjct: 251 QEKAIINLDDPYGKRLIE---SLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTPL 307

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++      +G     N+L  +  V  L  D+ T I+ L  F    GR +R +    Q  
Sbjct: 308 GTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDI 367

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLS 397
             ++D  Y   P S++   + L    P  +G+ I V G   +     +       AE+  
Sbjct: 368 TVIVD--YAHTPDSLE---NSLKAARPFIQGQLICVFGCGGDRDRTKRPLMGQASAELAD 422

Query: 398 LYNISHVWLSGFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  ++           + +     +P ++                     GD V++  K 
Sbjct: 423 VSVVTSDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGKG 482


>gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
 gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
          Length = 500

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 175/491 (35%), Gaps = 66/491 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG---ISID----SRSIAPQEAFFAIKGPHYDGHDF 56
           + T   +L+A++  ++ +     ++    +  D    S        F  I G  +DGH F
Sbjct: 1   MSTLQLVLKALKEKNL-LKEARNISNPSLVLWDVFNKSHQCEENSLFCCIPGEKHDGHSF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAIT 114
              AVQ+GA +++    +      L +P   V++   A+     AV      + ++  IT
Sbjct: 60  ASDAVQRGAAVLLCQHALP-----LQVPQIIVENSRWAMGFAAAAVYGFPSKQVSLYGIT 114

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNN---------------HIGVPLTLARMPVD 159
           G+ GKTT+  M+   L    +    +G+                     V   +ARM  +
Sbjct: 115 GTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKEQEADRTTPESCDVQRLIARMKRN 174

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLE 218
               +     SH      L   +     V T + P HL     +E    AK ++F E + 
Sbjct: 175 GCTSVIMEASSHGANQGRLNGCL-FQGMVFTNLTPEHLDYHKDMEHYFEAKKKLFEEYVS 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQL 276
           +     +N DD +   L      +  K   SFG    ++ D QL+ +     +  M+VQ 
Sbjct: 234 ENWCGAVNSDDEYGRRLL----RIYGKKCLSFGLDSTRHHDVQLQNFYMTLSELSMKVQF 289

Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                +++     G     N L  + I   +        K L       GR ++Y     
Sbjct: 290 FNSDPIDITLPLTGRFNIYNALGAMAICYKMGVAPLVIKKGLESMPQVPGRLEKYFFENE 349

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                     Y   P +++  +S L ++     G+ I+V G   E  + ++     L +V
Sbjct: 350 VCGVV----DYAHTPDALENVLSALREV---CHGKIISVFGHGGERYQANRPL---LGQV 399

Query: 396 LSLYNISHVWLS-----GFHVLALKDALPRSI--------HVHYSETMDGLFLFIQSSLV 442
            +      + ++           + +A+ + I        H    +  + +   + S   
Sbjct: 400 AARL-ADIIIVTMDNSRSEDPAKIAEAIEQGIASVVEAPPHYRILDRNEAVRTAL-SMAK 457

Query: 443 DGDVVVV--KS 451
            GDVVVV  K 
Sbjct: 458 PGDVVVVTGKG 468


>gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 511

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 147/361 (40%), Gaps = 16/361 (4%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
            +     +      ++ ITGS GKT+ K +    LS   +      S+N  +G+   +  
Sbjct: 149 QEKIRNYKENYDLKVLGITGSFGKTSVKFISNTILSEGLRVKNTPSSFNTPMGLSKIINN 208

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    +  I ELG    GEI  +  LV+P+I +IT I P H+  F  I+ I + K E+ 
Sbjct: 209 ELENTTEVFIAELGAKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNIQNTKYELI 268

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L + G    NYD+ + + L  K+    I+  Y     +  D            S   +
Sbjct: 269 EMLPENGVAIFNYDNDYVKPLADKTEIKTIR--YGIKDVEKLDVYATDISVDEMGSKFIL 326

Query: 275 QLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++    +E     +G H   N+L       IL   ++     +    P E    R    
Sbjct: 327 HIRELGEIECESKLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVE---HRLNIV 383

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +     +ID+++N+NP   +AA+ V+S+     +GR+I +   M E+G++ +  +  + 
Sbjct: 384 NSNSGVIVIDDAFNSNPIGFRAALDVISEFK---DGRKIIITPGMVELGDMEEEENYKIG 440

Query: 394 EVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++      V L G    A     L+DA     +V    +++     +       DVV+
Sbjct: 441 FEIAKT-CDFVILVGKKRTAPIYRGLEDAKYNLENVFRVNSLNEATQVLGHLSAPKDVVL 499

Query: 449 V 449
            
Sbjct: 500 F 500


>gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia typhi str. Wilmington]
 gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 174/455 (38%), Gaps = 50/455 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +NG+S +S+++   E FFA+KG + DG+DFI  A+  GA LV+        I      V 
Sbjct: 20  INGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK----VI 75

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +I++TG+ GK++    +      ++K  A IG+    
Sbjct: 76  YVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGLE 135

Query: 147 IGVPLTLAR--------------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           I     +                          +++  FE     L + R      + +I
Sbjct: 136 IFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRL--GKTKVNI 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T+ +  HL      E    AK ++F + L  +G   LN D    E +K       +K
Sbjct: 194 VSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVK 253

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I + G  K  D Q+ K         ++         +    IG   A N+L+    +  
Sbjct: 254 FI-TVG--KKGDVQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYY 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D  I+ALS   P +GR +R          T I   Y+  P +++ A+  L  I P
Sbjct: 311 TGFKFDEIIEALSKVKPVKGRMERI-------DGTNIFVDYSHTPDALEKALIELQNIKP 363

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS 421
           H  G+   + G     G+  ++    + ++ + +  + +             ++  + R 
Sbjct: 364 H-GGKLSVIFGC---GGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRG 419

Query: 422 IHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
           I        E+ +    +  ++L   D++++  K 
Sbjct: 420 IGTATYTEIESREEAIKYGINNLKQDDILLIAGKG 454


>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           RCH1]
          Length = 486

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 168/474 (35%), Gaps = 49/474 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  LL    G     +PQ     I  DSR + P + F A+ G   DG  FI  AV +GA
Sbjct: 7   TFDTLL----GRVAATLPQ-----IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTK 123
            +VV   D +  +   +  V   DD   AL  L  A    +     ++ +TG+ GKTT  
Sbjct: 58  TMVVCRADGLQHLPEAAFAVAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTIT 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL---------------G 168
            +L    +S  +    +G+ +      +  A +       + E+                
Sbjct: 118 YLLEHLFASAGRRCGVLGTVSYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEV 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNY 227
            SH  +   +  + R   AV+T +   HL     +E   +AKA +F  L + G    +N 
Sbjct: 178 SSHALDQERVAGI-RFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNA 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +   L A         +     S          +  +    + +  +G++ EV    
Sbjct: 237 DDPWGRRLLADLPGAVGFALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H A N+L    +   L       +  L  F    GR +R     ++G    +D  Y 
Sbjct: 297 VGAHNASNLLAVQAVGLGLGLSPADFVH-LENFTGVPGRLER--ITNDRGLDVFVD--YA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++VL  +   G  R + V G     G   ++    +   ++ +    V  S
Sbjct: 352 HTPDAL---VNVLRALRDVGFTRIVTVFGC---GGNRDRTKRPLMGAAVAAHADVAVLTS 405

Query: 408 G--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +  +K  L  +  V                L  GD ++V  K 
Sbjct: 406 DNPRHEDPLAIMEDVKPGLAGAREVVAEADRRKAIALALEMLRPGDALLVAGKG 459


>gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 489

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 168/468 (35%), Gaps = 48/468 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + ++    V  + +DSR +   + F A+KG  +D   F+  A+  GA  V++ TD+   
Sbjct: 9   DLPVLSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENE 68

Query: 78  I----GSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                   ++PV     +   L+ L          K T++ +TG+ GKTT  ++L    +
Sbjct: 69  HLSIQWQNNVPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWAT 128

Query: 132 SIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEI 175
            +    A +G+  N +   +  A+                +    DF   E+    L + 
Sbjct: 129 LLGHKAAVMGTIGNGLLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQY 188

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-EL 234
           R     ++   A+ T ++  HL     +E+ A AK   F  L       LN DD      
Sbjct: 189 R--VEALKFKSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASE-LQILNADDPIGAAW 245

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L    +++ +    +F  +        + +   E + +E      +  +    IG     
Sbjct: 246 LNELPNSIAVSCHPNFHATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+   ++  L    D  I+ +S      G   R       G  T+I + Y   P +++
Sbjct: 306 NLLLATAVLLALGYSFDDLIRTVSQLKGVNG---RMELIKKAGKPTVIVD-YAHTPDALE 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
            A++   Q   H +G+   + G   +     +      AE  +      V ++  +    
Sbjct: 362 KALNSARQ---HCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFA----DLVIVTQDNPRTE 414

Query: 414 --------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +     R   V      +    F   + V+ DV+V+  K 
Sbjct: 415 DPNKIEADILTGFSRMEDVGVIPDREEAIKFTIENAVEDDVIVIAGKG 462


>gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 476

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 166/471 (35%), Gaps = 48/471 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL++ I+   +       V  ++ +S  +     F A+KG  +DGH +I  A++K
Sbjct: 1   MIKLSDLVRKIEYLDVKHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYIDEAIKK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV   D+        I VF     L  ++ L        K ++I +TG+ GKTTT 
Sbjct: 61  GAKAVVHTEDVEYREDITYIRVFDPRQTLAEISNLI-TDFPSEKLSVIGVTGTNGKTTTS 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGI--FELGM 169
           +++   +  +    A IG+   ++G  +                +   V+ GI    L  
Sbjct: 120 KLIAYLIEKVFGPCANIGTDGANVGGEIIETSNTTPDITEINRILEKCVEKGIKYVTLEA 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G ++     VR  + +   ++  HL     ++    AK  +FE  E T     N DD
Sbjct: 180 SSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMDAYFKAKMILFENSEIT---IANIDD 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +      K       T  SFGK + A+ +     +  +    ++      ++     I 
Sbjct: 237 PWG-----KKAVELFPTTLSFGKDEKANIRATDISKTDKGISFKID----GVDFFIRTIA 287

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  +  +  L A +        V     G G R+    N     +I + +   
Sbjct: 288 DFELNNYLAAISTLKSLGASLTEL---SEVITDFPGVGSRFEYIENDKGLNIIVD-FAHT 343

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P + +     L       + ++IAV G     G+ +  F   + + +S Y I  +  +  
Sbjct: 344 PRAFEEIFKSL-----PRDKKKIAVFGIQ---GDRNPEFRNLIGKTVSDYGIYAIVTTDD 395

Query: 410 HVLALKDALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVVKS 451
                 + + + I    +E                        GD V+   
Sbjct: 396 PKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMG 446


>gi|268610479|ref|ZP_06144206.1| UDP-N-acetylmuramyl pentapeptide synthase [Ruminococcus
           flavefaciens FD-1]
          Length = 535

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 146/353 (41%), Gaps = 22/353 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
                + ITGS GKT+ K  L   L+S   T     S+N  +GV +T+   +    ++ I
Sbjct: 188 PTLHKVGITGSYGKTSMKFYLDELLNSKYNTLKTPESFNTPMGVTITIRNYLKPTHEYFI 247

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTI 223
            E+G   + EI+ L  +  PH  +IT++ P HL  F  IE + + K E+ + ++ K G I
Sbjct: 248 CEMGARRVHEIKELCDIAEPHDGIITSVGPQHLETFGSIENVLNTKFELADCVKAKGGKI 307

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSME 282
           + N D+           A   +    +G  +  D++       S  +   V    G+S  
Sbjct: 308 YFNGDNELIRK-----KAPEYEGAILYGLQEGNDYRATDISVSSRGTEFTVTAPGGESHR 362

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  QN+L  +         ++     +           R +        T I
Sbjct: 363 FSTKLLGEHNVQNVLGAIAYAHGTGIPLEKLTLPVKRIQAVP---HRLQLLDKGNGLTFI 419

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YN+NP+  +AA++VL          RI V   M E+G   +  + +  +  +  +  
Sbjct: 420 DDAYNSNPSGCRAALAVLELFDA----CRILVTPGMVELGAKQEELNFEFGQEAAK-SCD 474

Query: 403 HVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVV 449
           ++ L G          +KDA     +V+ ++ ++     +Q+   D   VV++
Sbjct: 475 YIVLVGKEQTKPIYNGIKDAGYDMNNVYVADGLNDALANVQAYQTDKKKVVLL 527


>gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
 gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
          Length = 484

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 178/482 (36%), Gaps = 60/482 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN +   H+L Q  Q        Q  V G+SI+S+++  ++ FF IKG + DG+DFI  A
Sbjct: 1   MNIINMSHNLKQLFQ--------QHNVKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDA 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA LV+ +      I      V  V DV  AL +       ++   +IA+TG+ GK+
Sbjct: 53  LSKGAVLVITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKS 108

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD--------------------V 160
           +    +    S + K  A IG+    I     L     +                    +
Sbjct: 109 SVVSYIAQTYSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGI 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           ++ +FE     L + R     ++ +IA  T+ +  HL      E    AK ++F   L  
Sbjct: 169 EYLVFEASSHGLDQARL--REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLP 226

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN D    E +K   H   IK I + G  K  D ++ +     +   +      +
Sbjct: 227 NGIAILNSDIEEIEFVKDYLHNHNIKFI-TVG--KKGDLEITRINGSLKGQNINFTFNNR 283

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG   A N+L+ +  +       D  I +L      +GR +R          
Sbjct: 284 EYNFNTPIIGSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERI-------DN 336

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T I   Y   P ++  A++ L  I      +   V G      +  +S    +A      
Sbjct: 337 THIFVDYAHTPDALAKALTELKNIK-LRGSKLSVVFGCGGNRDKAKRSLMGQIA----AK 391

Query: 400 NISHVWLSGFHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           +   + ++  +           + +       Y+E    +    +  ++L   D ++V  
Sbjct: 392 HADTIIITDDNPRNEDPKLIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDTLLVAG 451

Query: 450 KS 451
           K 
Sbjct: 452 KG 453


>gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii str. Madrid E]
 gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii]
 gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE
           (murE) [Rickettsia prowazekii]
 gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii Rp22]
          Length = 480

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 177/456 (38%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S +S+++   E FFAIKG + DG+DFI  A+  GA LV+       +I      V 
Sbjct: 14  IKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAIDK----VI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +I++TG+ GK++    +  A S +KK  A IG+    
Sbjct: 70  YVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTIGLE 129

Query: 147 IGVPLTLAR--------------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           I     +                          +++  FE     L + R      + +I
Sbjct: 130 IFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRL--GKTKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T+ +  HL      E    AK ++F + L  +G   LN D    E +K   H   +K
Sbjct: 188 VSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNVK 247

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I + G  K  D Q+ K         ++         +    IG   A N+L+    +  
Sbjct: 248 FI-TVG--KKGDLQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYY 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D  I+AL+   P +GR +R          T I   Y+  P S++ A+  L  I  
Sbjct: 305 TGFKFDEIIEALAKVKPIKGRMERI-------DGTNIFVDYSHTPDSLEKALIELKNIKL 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
           H   +   + G   +  +  ++    +A  L+     +V ++           ++  + R
Sbjct: 358 H-GSKLSVIFGCGGDRDKTKRALMGQIAAKLA----DNVIITDDNPRFEDPKLIRAEIIR 412

Query: 421 SIH-VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            I    Y+E  +      +  ++L   D++++  K 
Sbjct: 413 GIGTATYTEIASRAEAIKYGINNLKQDDILLIAGKG 448


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 177/470 (37%), Gaps = 53/470 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +LL A  G  +G          S DSR  AP E F AI+    DGHD+I  A+  GA
Sbjct: 4   TLAELLDA-GGTLVGPSVTDTFTDWSYDSRLTAPGECFIAIRTARADGHDYIPAALAAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+          + +  V    D    L + A         T++A+TG +GKT  +  
Sbjct: 63  RGVLCRRP---PHAADNATVIVCSDPQTVLLRWASNRLRALHPTVVAVTGGIGKTLARRA 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+ +  T+    ++N+ +G+P+ LAR+     + + E    HL     L     PH
Sbjct: 120 IAAVLTQLAPTFQSRRNFNSLLGLPIALARLRAHDRYAVLEFAGEHLS---PLVAAFPPH 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT  A                  +    L++ G   L+          A +      
Sbjct: 177 LAVITPGADP----------------QTVTLLQQHGVRVLSA---------AAADC---- 207

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               +  +     +        +      +  G  + +    +G       L  + +   
Sbjct: 208 ----YTIAGEFAIRATDISFRRDGVTFIARGPGLELPIFTPLLGPPGVSAALAAIAVGLS 263

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   +AL+   P  GR +  R    +    +ID+S+NA   +M AA+  L+ +  
Sbjct: 264 YHMSPEPIQQALTRLEPPAGRLRPLR---GKNGEMIIDDSFNATLPAMVAALQTLAALPA 320

Query: 366 HGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFH---VLALKDALPRS 421
               RRIAVLG   E+  +  +    DL    +  +  ++ L G     ++     +  +
Sbjct: 321 Q---RRIAVLGTPAELPAIDPTPMLSDLGGQAA-RSADYLVLKGTGAATMVHAARLVKPT 376

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL--EEFP 469
           I +H  +T     + + S    GD+V+V         +++  LL  +E P
Sbjct: 377 IPIHVVDTNTAAQMSLPSDRGAGDLVLVSGGAGERLEQVVAPLLADDELP 426


>gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa]
          Length = 487

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 157/456 (34%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DS  + P + F  + G H DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PDLRCRVINLDDDFGRRLAGEEQ---DSEL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+    +  +     +  K   +    +G     N+L  +G +  L
Sbjct: 251 ITYSLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLLGRFNLSNLLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   ++ L       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 311 GYPLGDILRTLPQLQGPVGRMQRL----GGGGKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
              R + + G   +     +     +AE L+      V ++  +         +  ++  
Sbjct: 364 AAARLLCLFGCGGDRDAGKRPLMAAIAERLA----DEVLVTDDNPRTEASAAIIADIRKG 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V +  +       + +S    DVV++  K 
Sbjct: 420 FAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
 gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
          Length = 497

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/462 (20%), Positives = 162/462 (35%), Gaps = 39/462 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +     Q  V G+S+DSR       F A+ G +  G  FI  A+++GA  V+ + +  
Sbjct: 15  GLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGAAAVLTDAEGA 74

Query: 76  ASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           A    L    ++ +   +D    L+  A          +IA+TG+ GKT+         +
Sbjct: 75  ALARDLLDGAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTSVASFTRQIWA 134

Query: 132 SIKKTYACIGSYN----------NHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIR 176
            +      +G+            +    P+TL R+  +           E     L + R
Sbjct: 135 ELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAMEASSHGLAQRR 194

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V+   A  T     HL   +  +E   AKA +F   L + GT  +N DD     +
Sbjct: 195 L--DGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINIDDPRGAEM 252

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              +   G + I   G+   AD  LR  +  +    M    +G+  +     IG    +N
Sbjct: 253 AEIARHRG-QGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLIGGFQGEN 311

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+  G+     AD       L       G   R   A  +     +   Y   P ++  
Sbjct: 312 LLLAAGLAIATGADPSRVFDTLPQMRTVRG---RMELAATRENGAAVFVDYAHTPDAVGT 368

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI  L    PH  GR IA++G     G    +    L    +  +   V ++  +  +  
Sbjct: 369 AIRALR---PHVMGRLIAIVG----AGGDRDAGKRPLMGRAAGEHADQVIVTDDNPRSED 421

Query: 416 DALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVVKS 451
            AL R+  +                L     L  GD +++  
Sbjct: 422 PALIRAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILG 463


>gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
 gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
          Length = 499

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 162/465 (34%), Gaps = 46/465 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71
           G +        ++G+++DSR  A    F A+ G    G  FI  A+++GA  ++ +    
Sbjct: 18  GLTARGGADPLISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAVAILTDAAGA 77

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      +  V+D   AL   A         T++A+TG+ GKT+    +     
Sbjct: 78  KIAAQPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATFVRQIWC 137

Query: 132 SIKKTYACIGSYN----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIR 176
           ++      +G+            +    P+TL R         V     E     L + R
Sbjct: 138 ALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGLDQCR 197

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V+   A  T     HL      E   +AKA +F   L + G   +N +DS    +
Sbjct: 198 L--DGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRGAEM 255

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A + A G + + S G+    D  L   +       +      +  +   + IG   A+N
Sbjct: 256 RAVAAARG-QEVISIGRGLG-DISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQAEN 313

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+  G+V     D       L       G   R   A  +     +   Y   P ++  
Sbjct: 314 VLLACGLVIAGGEDPAAVFDTLPQLTTVRG---RMEHAATRDNGASVFVDYAHTPDAVAT 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
           AI  L    PH  GR +A++G     G+   +    +    +  N   V ++  +     
Sbjct: 371 AIKALR---PHVLGRLVAIVGA---GGDRDATKRPLMGR-AAQENADVVIVTDDNPRSED 423

Query: 413 ------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 A++   P ++ V          L     L  GD +++  
Sbjct: 424 PAVIRAAVRGGAPDALEVG---DRAEAILRGVDMLSTGDALLICG 465


>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 171/457 (37%), Gaps = 47/457 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  I  DSR ++    F A++G H DG D+I  A+  G   ++V         S  +
Sbjct: 31  QCQVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCR-IIVTELPRPESASDEV 89

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V D   A+         R   + TI+ +TG+ GKTTT  +     S +    A   
Sbjct: 90  VWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAALFS 149

Query: 142 SYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    IG     A              R  VD       + +S    ++   + +   +A
Sbjct: 150 TVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALA 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     ++   +AK  +F+ L       +N DD    ++     A     +
Sbjct: 210 LFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTPDAYALVNADDRNGSVMVQNCAA----HL 265

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +++    +AD+  +   Q  + S   + L  + +E     +G + A N+    G+  +L 
Sbjct: 266 HTYAMRSHADYMAQLLGQYVDGS--TLLLDNEEVE--IKLVGSYNAYNVTAVYGVARLLL 321

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D+D ++    +   +   G+    A  +G+  ++D  Y   P +++  +  +S+++   
Sbjct: 322 PDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELNASQ 379

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
                 V+G     G+       ++  +       H++L+  +  +         + + +
Sbjct: 380 ---VYVVVGA---GGDRDMGKRPEMGRIAYNM-CDHLYLTSDNPRSEDPQTIIDQMLEGI 432

Query: 419 PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           P++        +          ++   GD+VV+  K 
Sbjct: 433 PQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469


>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 499

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 171/459 (37%), Gaps = 47/459 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             Q  V  I  DSR  +    F A++G H DG D+I  A+  G  ++V       S+   
Sbjct: 29  TEQCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESLSD- 87

Query: 82  SIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    V D   A+         R   + TI+ +TG+ GKTTT  +     + +    A 
Sbjct: 88  EVAWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAAL 147

Query: 140 IGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +    IG     A              R  VD       + +S    ++   + +   
Sbjct: 148 FSTVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFA 207

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+ T +   HL     ++   +AK  +F+ L       +N DD    ++     A    
Sbjct: 208 LALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSPDAYALVNADDRNGSVMVQNCAA---- 263

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            ++++    +AD+  +   Q  + S   + L  + +E     +G + A N+    G+  +
Sbjct: 264 HLHTYAMRSHADYMAQLLGQYVDGS--TLLLDNEEVE--IKLVGSYNAYNVTAVYGVARL 319

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D+D ++    +   +   G+    A  +G+  ++D  Y   P +++  +  +S+++ 
Sbjct: 320 LLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELNA 377

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
                   V+G     G+       ++  +       H++L+  +  +         + +
Sbjct: 378 SQ---VYVVVGA---GGDRDMGKRPEMGRIAYNM-CDHLYLTSDNPRSEDPQTIIDQMLE 430

Query: 417 ALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
            +P++        +          ++   GD+VV+  K 
Sbjct: 431 GIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469


>gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [NC10 bacterium 'Dutch sediment']
          Length = 568

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 155/393 (39%), Gaps = 17/393 (4%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
           AGL  V+     +I + +  +  ++  +         AR+R     +I ITGS GKTTTK
Sbjct: 171 AGLFTVSEVAAGTILAANASLAPLERTINRRFYAQATARMRRYPGEVIGITGSYGKTTTK 230

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +    L      +      N  +G+   +   +  D  F + E+     GEIR +  ++
Sbjct: 231 FITAALLHGRYPVFKTPDGVNTTMGIVRVVREGLRDDHRFFVVEVAAYGPGEIREVCEVL 290

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I ++T +   HL  F   E IA AK E+ + L   G   +N DD     L  ++   
Sbjct: 291 RPRIGILTAVGVQHLERFGTPERIAEAKYELIDSLPPDGLAIVNADDPVCLRLAERARQE 350

Query: 243 GIKT-IYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           G +  +Y  G+ + A   + +     S+ S   V+    +       +G     N+L   
Sbjct: 351 GRRVLLYGIGEDERALGVRGKDVTLSSKGSAFRVETGHGAAMFETRLLGGWNIGNILGAT 410

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    ++     +    P     KR       G   LID + NANP   + A+ VL
Sbjct: 411 AAALECGVPLEEIAAGVRALAPAP---KRLEIREEGGVIKLIDVA-NANPRGAQMALEVL 466

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
           SQ      G +I +   + E+G++    +  L    +     +V L G          L+
Sbjct: 467 SQF---EGGSKILITPGLVELGQIEAEENRRLGRAAAAV-CDYVVLVGPQQTQPLQEGLR 522

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +A      V  +   D +   +++ + +GDV++
Sbjct: 523 EAGFSGSRVLIARHADEVADCLKAIVCEGDVLL 555


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 164/452 (36%), Gaps = 36/452 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  ++G+ +DSR +   + F A+ G  +DG  FI  AV  GA  +V    +   + +L +
Sbjct: 19  ETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVAGFVEALQV 78

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  + ++      +A            +I +TG+ GKTTT  ++   +    K+   IG
Sbjct: 79  PLVEMPELQQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKSCGVIG 138

Query: 142 SYNNHI-----------GVPLTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIA 187
           +    +              ++L +   D  D G++   M  S    ++   + V    A
Sbjct: 139 TLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNGVGFETA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E    AK  +F   E      +N DD F   +            
Sbjct: 199 VFTNLSHDHLDYHGSMEAYGRAKLALFAN-EGLKHALVNLDDEFGARVCDVVEPGVQLIT 257

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           YS   +  AD  + +    + +    ++    + E V    G     N+   +  V++  
Sbjct: 258 YSVS-NPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSPLPGDFNLANLAAAVSAVTLAG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K +S   P  GR +    +   G   +ID  Y   P +++  ++ L     H 
Sbjct: 317 EPLAEVLKNVSRLRPVPGRMQS--LSNTLGLQVIID--YAHTPDALEQVLTALR---LHV 369

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRSIH 423
           +G+ + V G     G+  +     +  V        +  S    G    A+   +     
Sbjct: 370 DGQLVVVFGC---GGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDPAAILADIEVGCS 426

Query: 424 VHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
             Y   +D         +    GD VV+  K 
Sbjct: 427 GQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKG 458


>gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
 gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
          Length = 495

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 169/480 (35%), Gaps = 43/480 (8%)

Query: 1   MNPLW--TFHDL---LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M P+   T  +L   L          +P   + G+ +DSR++ P E F A++G  +DG  
Sbjct: 1   MTPVTVNTCRELPALLMGTGADLAAGLPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRA 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAI 113
           ++  A   GA   +V  ++        +P   +  +   L ++A         +  + A+
Sbjct: 61  YLSQAAAAGAVAALVEDELPGEEPP--LPCVVIPGLRHKLCEIAGRYYRDPSRQMHVAAV 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPV 158
           TG+ GKTT  ++    L S       IG+                 + I +   LA    
Sbjct: 119 TGTNGKTTVSQLFAQLLRSAGYDCGVIGTLGASLTAGVQDSVHTTPDSIAMQEILASWAG 178

Query: 159 DVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                +  E+    L + R   + +    A+ T +   HL     +E   +AKA +F   
Sbjct: 179 QAVPFVSMEVSSHALDQGR--VNGLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLFAF- 235

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQL 276
           E   T  LN DD F ++L  +  +LG+  +  +G    +AD +L   +  S    M ++ 
Sbjct: 236 ESLRTAILNSDDPFSDVLAGR-MSLGVA-VLRYGLNDASADVRLSNLRLHSAGMQMRLES 293

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +    +G   A N+L  L          D  + A     P  GR +    A   
Sbjct: 294 PWGNGTLNCPLLGKFNAVNLLAALTAALQAGVPFDAVMTAAESLQPVPGRMEPIHSAAG- 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+   Y   P +++  +  L +     +GR IAV G   +  +  +    +    +
Sbjct: 353 ---PLVVVDYAHTPDALRHVLIALRE---QCKGRLIAVFGCGGDRDKGKRPLMAEAVAAI 406

Query: 397 SLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   +    +        +        +   H              S    D V++  K 
Sbjct: 407 ADRAVITSDNPRSEDPLAIIADIEAAMAGEYHVCADRGDAIAMAIESAAPEDCVLIAGKG 466


>gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium sp. P08]
          Length = 529

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 159/478 (33%), Gaps = 53/478 (11%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT  DL+ ++ G  + G  P   + GI++DSR + P + +  ++G H  G  F   A + 
Sbjct: 27  WT--DLMASLDGCRADGNGPA--ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAES 82

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  V+ +           +PV  VDD   A+   A           T+  ITG+ GKTT
Sbjct: 83  GAVAVLTDEHGAKLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTT 142

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-------------------PLTLARMPVDVDF 162
           T  ++   L +       IG+    +                      L  A +      
Sbjct: 143 TAFLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASD 202

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L   R         +   T +   HL     +++   AKA +F   +    
Sbjct: 203 VVMEVSSHALALQR--VDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTP-DLARV 259

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L  +  A G++ + +    + +D+Q+  W   +  +  +V        
Sbjct: 260 GVINVDDPRGRQLIERMQANGVRAVTT-SIHQPSDYQVTSWHAAATGAIFDVNTPSGERT 318

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G    +N  M L ++       D     L       GR +R     +     + 
Sbjct: 319 LELSLPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQ-VPGRMERVDLGADAPTALV- 376

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              +   P ++ +A+     ++    GR IAVLG     G+        + +V +     
Sbjct: 377 --DFAHTPQAIASALDAARSLADS--GRLIAVLGA---GGDRDAVKRGPMGQVAAER-AD 428

Query: 403 HVWLSGFHVL-------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            V ++  +                  DA    I V                   GDV+
Sbjct: 429 IVVITDDNPRTEDPAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVI 486


>gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 526

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 81/352 (23%), Positives = 139/352 (39%), Gaps = 20/352 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
               +I ITGS GKT+ K  +   LS+         S+N  +GV  T+  ++    +  I
Sbjct: 177 QHLKVIGITGSFGKTSVKHFMHAVLSAKFNVLMTPESFNTKLGVTRTIREKLKPYHEVFI 236

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+G    G++  +  LV     V+T I   HL  F  ++ I   K EI E L   G   
Sbjct: 237 AEMGAKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNIKKTKYEIIETLPDNGVGV 296

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-GKSME 282
           LN DD               + +  +G    + D + +     S+     V L+ G++  
Sbjct: 297 LNKDDENIMSYAPYQK----RDVIYYGIDAPDVDIRAKDISYSSKGMDFTVVLKNGETQT 352

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N+L  + I   L   +   +K +           R     + G  T+I
Sbjct: 353 FRTKLLGKHNVYNILAAIAIGLQLGMKLSEMVKPIRSLDAVP---HRLELKRSTGNITII 409

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+N+NP   K A+ VL  +    EG R+ V   M E+GE     + + A   +     
Sbjct: 410 DDSFNSNPVGSKMAVDVLGSM----EGYRMLVTPGMIELGEKEYELNKEWATYAAN-KCD 464

Query: 403 HVWLSG-FHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ L G      L+D L  +      ++ +E +      +     +  +V++
Sbjct: 465 YIILVGKKQTKPLQDGLKEANYPEAQLYIAENLQDAIQQMHKVAKEKTIVLL 516


>gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
 gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
          Length = 520

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 154/466 (33%), Gaps = 49/466 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              +  +  ++ DSR + P   F AI+G  +DGH +I  AV+ GA  V+       +   
Sbjct: 32  EDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAAVICEALPEDNGSG 91

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                        A    A       +  +I +TG+ GKTTT  ++   L+S       I
Sbjct: 92  AVYIRVADSRRALAAAARAFYRNASERIFLIGVTGTNGKTTTARLIADMLNSCGIPAGYI 151

Query: 141 GSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+    I                        +       + E+    L   R     +R 
Sbjct: 152 GTNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAVMEVSSHALVLDR--VSGLRF 209

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA--- 241
             AV T ++  HL     +   A AK  +F+ L+  G    N DD +   + ++  A   
Sbjct: 210 RCAVFTNLSMEHLDFHQTMAGYADAKQILFDQLDPEGFAVFNIDDPYASQMASRVAADKR 269

Query: 242 ------LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                    +     G+S    F      +    + +E+        V     G +   N
Sbjct: 270 FCCTLKPQRELTLRCGRS----FSAAVSSRTLGSASVELHFPDAVHTVQTELPGMYNVMN 325

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L    ++S +          L      EGR +R     +          Y   P +++ 
Sbjct: 326 LLEAAAVLSGMGIAPGHVAAVLGKPFRVEGRMERI---WDTEKSRCAFVDYAHTPDALEK 382

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFH 410
           A+S L ++    + R + V G     G   +    ++  + S      V+L+       +
Sbjct: 383 ALSALGELKSS-DARLVVVFGC---GGNRDRLKRPEMGRIASE-KADFVFLTSDNPRDEN 437

Query: 411 VLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              + D +       +       +       ++L+ GD+++V  K 
Sbjct: 438 PEFILDEIECGMEGSNYRRITGREEAIREAAATLLPGDILLVAGKG 483


>gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
 gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
          Length = 481

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 168/452 (37%), Gaps = 49/452 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++ + ++   I       +  I  DSR I   + F A+ G   DGH++I  AV  GA +V
Sbjct: 3   EIFENVEYEVINKGKDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMV 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +       ++    +    VD++   L           + K  II ITG+ GKTT+  +L
Sbjct: 63  IAEKK-DITVADKDVTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYIL 121

Query: 127 TIALSSIKKTYACIGS--YNNHIGVPLTLAR-----------MPVDVDFGIFELGMSHLG 173
              L +  +    IG    +  I  P T              +   V++ I E+  SH  
Sbjct: 122 DSMLENTSRI-GTIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEVS-SHAL 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI     ++     + T +   HL     +E   +AK ++F  L       +N DDS+ E
Sbjct: 180 EIGR-VDMLEFDSVMFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAVNIDDSYGE 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +         K+  S+   K++D + +  +  +      V  QG         +G +  
Sbjct: 239 RIYN-----SNKSYKSYSIIKDSDLKGKIEEYHNGGMKASVIFQGAEYFFDTKLVGDYNL 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  +G++  L  D+   I+ +       G   R+        F +I + Y      +
Sbjct: 294 YNLLGCIGVLLNLGFDIRDIIERVKRVGYVPG---RFELVNEGQDFRVIVD-YAHTDNGL 349

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +  +  + +I+   E R I + G     G+   +    +A   + Y+   V ++  +   
Sbjct: 350 ENILETVRKIT---EKRVITIFGA---GGDRDNTKRPKMARAAAKYS-DFVIITSDNPR- 401

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                        +E    +   ++  L D D
Sbjct: 402 -------------TEDPAEITRQVEKGLTDID 420


>gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
 gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
          Length = 458

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 156/447 (34%), Gaps = 50/447 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR++ P + F AI     DGHD+I  A+  GA  ++         GS  +    V+
Sbjct: 5   LKTDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIA------EHGSYKVETIIVE 58

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYN 144
                L          L     +I +TG+ GKTTT  M    L  +KK  A    IG Y 
Sbjct: 59  STREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFYY 118

Query: 145 NHIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
             +  P+      VDV             ++ + E+    L + R   H +       T 
Sbjct: 119 GDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRI--HGLEFDEVAFTN 176

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E  A+AK  +F          +N DD  ++    +S+   I      G
Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQHFVLESNNNII-----IG 231

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +  ++D ++ +       +  + +      +   + +G +   N L+ L +V+ L   ++
Sbjct: 232 QH-DSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIE 290

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +          GR +  +   N      I   Y   P    A I+VL        GR 
Sbjct: 291 DILALNDKLKAPAGRMELLKYGTNS-----IFVDYAHTPD---AVINVLKSAEEFKNGRI 342

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYS 427
           I ++G     G+   +    + +    ++   ++ S          + D +   +     
Sbjct: 343 ITIIGC---GGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNF 399

Query: 428 E---TMDGLFLFIQSSLVDGDVVVVKS 451
           E         +     L   D++++  
Sbjct: 400 EIEVDRQKAIIKGMQQLKHNDILMILG 426


>gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 242

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 14  TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 72  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP 
Sbjct: 127 TAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPE 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++
Sbjct: 187 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQS 238


>gi|291557015|emb|CBL34132.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           V10Sc8a]
          Length = 511

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 24/353 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
              T++ +TGS GKT+TK  L   L +         SYN  +GV   +  ++    +  +
Sbjct: 166 PDLTVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGVVKVVRGQLNATHEIFL 225

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTI 223
            E+G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L  K G I
Sbjct: 226 CEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGII 285

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           FLNYD+ +       +     K   ++      D+           +   V    +  + 
Sbjct: 286 FLNYDNEYI------AKHECNKNKVTYSLGGGTDYYADNISVSENGTQFTVHNGNEEKQF 339

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H  QN++  + + + L       +  +        R +  +        T+ID
Sbjct: 340 TTKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQIIKGT----NKTIID 395

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++N+NP   KAA+  L+      EG +I V   M E+GE     +    E  +      
Sbjct: 396 DAFNSNPTGAKAALDTLAVF----EGFKILVSPGMVELGEKEYELNKRFGEQAAEI-CDF 450

Query: 404 VWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGD--VVVV 449
           V   G    + + D L          + ++ ++     +++    G+  +V++
Sbjct: 451 VIAVGERQAVPIVDGLKAKGYPEEKTYVAKNLNDALAKVENIKTGGEKKIVLL 503


>gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 463

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 97/451 (21%), Positives = 166/451 (36%), Gaps = 54/451 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ +S+ +     FFAI+G   DGHDFI  A++KGA  VV               +  V
Sbjct: 12  NITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPFKDFKN-----IIVV 66

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           +D   A  +   A          +I +TG+ GKT+T  ++   LS   K    IG+    
Sbjct: 67  EDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKG-GIIGTMYYK 125

Query: 147 IGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +G  +  A                     +DF   E+    L ++R   +  +    V T
Sbjct: 126 LGNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLR--VYPTKFFATVFT 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E   +AK  +F+  E      LN DD +  +L  +     I    ++
Sbjct: 184 NLTQDHLDYHKTMENYFNAKRRLFKDYEYE-VCVLNIDDDYGSMLYEEFKDKAI----TY 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G S+NA  ++  + Q  E        + K  E+  +  G   A NM  ++ +   +  D+
Sbjct: 239 GYSENAHLKIDYFDQ--ENKVFGFYYKNKHYEIKTNLKGDFQAYNMGASILLGFYMGFDI 296

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + +       G   R+      G   +ID  Y   P +++  +     I+ +   R
Sbjct: 297 EEIQRGILSLSSIPG---RFETIELNGVKVVID--YAHTPDALEKLLKTAKAITKN---R 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR---SI 422
            I V G     G   ++    + ++ S  +   +  S        +  +KD L     S 
Sbjct: 349 LICVFGA---GGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDILEGIDPSK 405

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                E             +DGDVVV+  K 
Sbjct: 406 GPMVEEDRKKAIALALDIALDGDVVVIAGKG 436


>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 514

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 178/496 (35%), Gaps = 64/496 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +F +LL  +  H         ++ ++ DSR + P   F AIKG H DGH +I  A+++
Sbjct: 1   MKSFAELLLHVT-HQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  VV   D        +IP   V D   AL+ +A A       +  ++ ITGS GKTT
Sbjct: 60  GAVAVVY--DDPHQAPPATIPSALVADAKVALSPIAAAFYDYPAQQLEVVGITGSKGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI----GVPLTLARMPVDVDFGIFELGMSHLGE--- 174
           T  +   AL +  +    + + +  I        T    P  ++       M   G    
Sbjct: 118 TTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGCRYA 177

Query: 175 -IRFLTHLVRP----------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
            +   +H + P           +A+IT +   HL     +E+  + KA++F+ L      
Sbjct: 178 VVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATSPSQ 237

Query: 218 --------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                          +N DD      +A +         S+     AD +  +    S+ 
Sbjct: 238 KSILGQPTPVEKVAIVNADDPHAAQFRAAAGEQVRH--LSYAIHAEADLRATEIVSTSKG 295

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                     +  +    +G     N+L  L +      D+  AI+ L       GR + 
Sbjct: 296 LRFTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRME- 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  L Q F  L+D  Y  NP S +    V+S + P  +GR IAV G   E     +   
Sbjct: 355 -QVELGQPFSVLVD--YAHNPDSFE---QVMSMLRPLTQGRLIAVFGSAGERDLAKRPIQ 408

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI--------HVHYSETMDGLFL 435
             +A          ++L+     A      L++    +         +            
Sbjct: 409 GQIA----AKWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIE 464

Query: 436 FIQSSLVDGDVVVVKS 451
              ++   GDVV++  
Sbjct: 465 QALATAQAGDVVLLLG 480


>gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
 gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
          Length = 476

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 165/465 (35%), Gaps = 49/465 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            S+       +  I  DSR +   + F AI G   +GHDFI  A+ +GA +++       
Sbjct: 2   ESVVGNTAVAIKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIICEKLPND 61

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +    +    V +   AL  +A         K  ++ +TG+ GKTT   +L    +   
Sbjct: 62  IVNG--VTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAG 119

Query: 135 KTYACIGSY---------------NNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFL 178
                + +                 + + +   LA M  + V++   E+    + + R  
Sbjct: 120 FKVGLLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHR-- 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  +     + T ++  HL   S   E    K   F+ L  +     N DD   E++   
Sbjct: 178 TTGLVFAGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDELPASAFALTNVDDKNGEVMLQN 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A      Y++G    AD++     Q  E  +  + L+    EV    IG   A N+L 
Sbjct: 238 TKA----KQYTYGLKNYADYKA----QILENQFTGLLLKINDQEVWSRLIGSFNAYNILA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +L  +    +K +S  H   GR + +  +  +    ++D  Y   P ++K  + 
Sbjct: 290 IYAAAELLGLETLENLKFISELHSVNGRFQYF-ISPEEKITAIVD--YAHTPDALKNVLD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            ++ I    E   I V+G     G+  ++    +  + S  +   ++ S         A+
Sbjct: 347 TINAIRTKNE-ELITVVGC---GGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAI 402

Query: 415 KDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
            + + + +                            D++++  K 
Sbjct: 403 IEEIEKGVEPQNFNKTVSISNRKQAIKTACQMAQANDIILIAGKG 447


>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
 gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
          Length = 483

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 166/456 (36%), Gaps = 47/456 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GIS DSR + P   F A++G   DG  +I  A+++GA  +V  TD  A +  LS+
Sbjct: 18  SIEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIV--TDCQAVLEDLSV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V +V  +L   A         T++A+TG+ GKT+    +    + +    A IG+ 
Sbjct: 76  PVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIGTV 135

Query: 144 NN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L R+  +     V     E     L + R     VR    
Sbjct: 136 GVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRL--DGVRLTAG 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     +E+   AK  +F+ L   +    +  DD + + +   +     + 
Sbjct: 194 AFTNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVI-DAVTQARRR 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  +    + + +    +  +E +++ K         G     N L+  G+    
Sbjct: 253 VLTIGRKGHF-ITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGLAIAT 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D    AL       GR + +     +     ID  Y   P +++    VL  + P 
Sbjct: 312 GLSPDKVFSALETLQGAPGRLE-FVGKTEKNAPVYID--YAHKPEALE---QVLLSVRPF 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            +GR I V G   +  +  ++    +A          V ++  +            +  A
Sbjct: 366 TQGRLIVVFGCGGDRDQGKRALMGKIA----ADKADIVIVTDDNPRTENPEKIRKDILQA 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +P +I +           +    L  GD +++  K 
Sbjct: 422 VPTAIEI---ADRGEAISYSVGLLKAGDTLIIAGKG 454


>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
 gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
          Length = 498

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 154/420 (36%), Gaps = 39/420 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL       I       +  I+ DSR +     F  + G H DGH ++  AV+K
Sbjct: 1   MKNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA  ++    +    G   + V  V +    + K+A            +IA+TG+ GKTT
Sbjct: 61  GAIAIIAEKKISVPEG---VTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARM-----PVDVDFGIF 165
           T  +++  L         IG+ +  IG             + L R+        V     
Sbjct: 118 TTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKAKVTHVCM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEK 219
           E+    L   R          AV + +   HL     +   A+AKA++F        ++ 
Sbjct: 178 EVSSHSLVLGR--VEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKP 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD +  ++        +  +++F  +++A+ ++   +   + +      + K
Sbjct: 236 NKNACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKNK 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V    +G     N++  +        D +  IKAL+ F    G   R+        F
Sbjct: 296 EYPVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPG---RFELIDEGQEF 352

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +++ + Y   P  ++  ++   +I+    G+ I V G     G+        +  + + Y
Sbjct: 353 SVVVD-YAHTPDGLENILTTAREITT---GKIIVVFGC---GGDRDPMKRPIMGRIAAKY 405


>gi|167750587|ref|ZP_02422714.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
 gi|167656513|gb|EDS00643.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
          Length = 511

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 24/353 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
              T++ +TGS GKT+TK  L   L +         SYN  +GV   +  ++    +  +
Sbjct: 166 PDLTVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGVVKVVRGQLNATHEIFL 225

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTI 223
            E+G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L  K G I
Sbjct: 226 CEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGII 285

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           FLNYD+ +       +     K   ++      D+           +   V    +  + 
Sbjct: 286 FLNYDNEYI------AKHECNKNKVTYSLGGGTDYYADNISVSENGTQFTVHNGNEEKQF 339

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H  QN++  + + + L       +  +        R +  +        T+ID
Sbjct: 340 ATKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQIIKGT----NKTIID 395

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++N+NP   KAA+  L+      +G +I V   M E+GE     +    E  +      
Sbjct: 396 DAFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI-CDF 450

Query: 404 VWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGD--VVVV 449
           V   G    + + D L          + ++ ++     +++    G+  +V++
Sbjct: 451 VIAVGERQAVPIVDGLKAKGYPEEKTYVAKNLNEALAKVENIKTGGEKKIVLL 503


>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 506

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 88/502 (17%), Positives = 182/502 (36%), Gaps = 66/502 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +    +    +    +  ++ ++ DSR +    AF  I G  +DGH F+  A
Sbjct: 1   MNIDFTQQE---QLGIKRLWGQTKRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLA--VAARLRSKATIIAITG 115
           ++ GA ++   +  V        P      V+D    L +L+     R     T I +TG
Sbjct: 58  IRNGAAVLAGESAEVLEKAGRKYPDRTFILVEDARAFLAQLSILFYKRAHENLTTIGVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNN-----HIGVPLTLARMPV------------ 158
           + GKTT    +   L+ +      IG+         I +  +    P             
Sbjct: 118 TNGKTTVTAYVKSLLTLLGTPTGSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFK 177

Query: 159 --DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               +  + E+    +  ++     +   IA+ T ++P HL      E    AK ++F+ 
Sbjct: 178 ERGDEAAVMEVSS--VSTVQKRVEGIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQ 235

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEV 274
            +K     +N DDS    +      +    + ++   K  +AD +    +    +++ E+
Sbjct: 236 AKK---AVVNIDDS---GMAKDILKIHSGDVLTYSLDKRSDADVKASNLRTIGHETFFEL 289

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q +S  V    IG +   N+L  +         +   + AL+     EG   R+    
Sbjct: 290 KFQKESYIVRAPVIGDYNVANILAAVCTALHSGYSIHQILLALTSIEGPEG---RFELLT 346

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD-----------MCEMGE 383
             G   ++ + Y   PA++    ++L ++      R I ++             M E  E
Sbjct: 347 EYGNRKIMLD-YAHTPAALD---NLLREVKKLEYNRLIVLITGIGLRDKSKMPLMAETVE 402

Query: 384 LSQSFHIDLAEVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
                 +   +     +   +    L+GF       + P + +++   T     L   + 
Sbjct: 403 GRADEIVVSVDHPDFNDPDEIISNVLAGF-------SNPSADNIYTERTRAEAVLSALAL 455

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
             + D+V++ +S      +++ 
Sbjct: 456 SNENDLVLL-TSGCINGAQIVE 476


>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
 gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 43/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   I  H+   + +  ++G+++DSR++     F A+ G   DG  FI  A  KG
Sbjct: 1   MNLARLANGI-AHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ ++D   ++    +PV   D+   +  K+A     +   T++A+TG+ GKT+   
Sbjct: 60  AVAVLTSSD---AVVETDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSIAS 116

Query: 125 MLTIALSSIKKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELG 168
            L    ++     A IG+                  P+ LA +        V     E  
Sbjct: 117 FLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASMEAS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNY 227
              + + R     VR      T +   HL     +E   +AK  +F  L   G    +N 
Sbjct: 177 SHGIDQFRL--DGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINT 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +       +  +G   + + G++  +   L++ +   E+   EV+       VV   
Sbjct: 235 DDQWSGRAIEVATGVGC-DVRTVGRN-GSLLALKRLEHERERQVAEVKTPDGIQRVVLPL 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L+  G+  +    V  A++ L       G   R   A        +   Y 
Sbjct: 293 AGEFQMSNALVAAGLAIVTGTPVKAALETLENLKGASG---RLEKAGMTAGGVPVFVDYA 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++    VL  + P   GR I V   M   G+  ++    + E+ +      V ++
Sbjct: 350 HKPEALE---HVLRAVRPFTTGRVILV---MGCGGDRDKTKRPMMGEIANRL-ADVVIVT 402

Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +        + +  +                      GD V+V  K 
Sbjct: 403 DDNPRSEDPAVIRSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKG 454


>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 780

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 148/414 (35%), Gaps = 36/414 (8%)

Query: 5   WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  +LL    +   S+    +  + GI  DSR +   + F    G   DGH ++  A +
Sbjct: 243 MSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADK 302

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120
           +GA  VV + ++          +  V+D    L  L+ A          +I I+G+ GKT
Sbjct: 303 RGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPALSAAFYKYPSKNMAVIGISGTNGKT 362

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGV-----------------PLTLARMPVDVDFG 163
           TT  ++     ++        +   ++                    L    +    +  
Sbjct: 363 TTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAV 422

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGL--EKT 220
           + E     L   R     V   IAV T +   HL       EE   AKA++F  +   + 
Sbjct: 423 VMEASSHGLASGR--CDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDPER 480

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +N DDS      A         + +F  ++K+AD    K++    ++ + V     
Sbjct: 481 HRKIVNIDDSNASFFIA--QGNPDVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPHG 538

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  F
Sbjct: 539 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPG---RCELIDEEQAF 595

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +I + Y   P  +   +  + ++ P    R I V+G   E     +     +A
Sbjct: 596 GVIVD-YAHTPDGLSILLDSVRELKPK---RIITVIGCAGEGDRGKRPMMTKVA 645


>gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           frigidimarina NCIMB 400]
 gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 170/463 (36%), Gaps = 51/463 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-----SL 81
           VNG+++DSR +     F A+ G   DG  FI  A+  GA  ++++TD     G       
Sbjct: 19  VNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGATAILIHTDNPDEHGIVDRLQY 78

Query: 82  SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++P+     +   L+ +A    L      ++I ITG+ GKT+  +++   +  +    A 
Sbjct: 79  TVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGKTSVSQIIAQIVYLLGHQAAV 138

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPH 185
           +G+  N +   L  +         +                + +S  G ++         
Sbjct: 139 MGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELCAMEVSSHGLVQGRVEAAPFE 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV T ++  HL     ++  A+AK  +F+         +N DD+       +  +   K
Sbjct: 199 IAVFTNLSRDHLDYHGDMDSYAAAKKRLFKF-PSIKHGVINIDDAVGAKWLTELASDQNK 257

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL------QGKSMEVVHHGIGYHMAQNMLMT 299
           + +S   +  ADF     +         +        +  S+++    +G     N++  
Sbjct: 258 S-FSIKGNSAADFYCDAIEYHDAGVTATLHFVEIDSEKSVSVQLNSPLLGAFNLSNLVAA 316

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + ++ +    + + +  L +  P  GR +R+    N    TL+ + Y   P +++ A+  
Sbjct: 317 IAVLYLQGKPMASILAVLPLLIPVAGRMERFSSVNNA---TLVVD-YAHTPDAIEQALKA 372

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L     H +G    V G   +  +  +      AE  +      V ++  +  +      
Sbjct: 373 LR---LHCKGTLWCVFGCGGDRDKGKRPLMAQAAERYA----DKVMITSDNARSEDPQTI 425

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   + +   V            + S     D+V++  K 
Sbjct: 426 INDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGKG 468


>gi|291530205|emb|CBK95790.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           70/3]
          Length = 511

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 24/353 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164
              T++ +TGS GKT+TK  L   L +         SYN  +GV   +  ++    +  +
Sbjct: 166 PDLTVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGVVKVVRGQLNATHEIFL 225

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTI 223
            E+G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L  K G I
Sbjct: 226 CEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGII 285

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           FLNYD+ +       +     K   ++      D+           +   V    +  + 
Sbjct: 286 FLNYDNEYI------AKHECNKNKVTYSLGGGTDYYADNISVSENGTQFTVHNGNEEKQF 339

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H  QN++  + + + L       +  +        R +  +        T+ID
Sbjct: 340 ATKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQIIKGT----NKTIID 395

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++N+NP   KAA+  L+      +G +I V   M E+GE     +    E  +      
Sbjct: 396 DAFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI-CDF 450

Query: 404 VWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGD--VVVV 449
           V   G    + + D L          + ++ ++     +++    G+  +V++
Sbjct: 451 VIAVGERQAVPIVDGLKAKGYPEEKTYVAKNLNEALAKVENIKTGGEKKIVLL 503


>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
 gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
          Length = 487

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 172/479 (35%), Gaps = 52/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +    +       V G+  DSR +  Q  F A KG   +GH FI  A++K
Sbjct: 1   MKVLKDILYGVSIDQLQGSTLKEVQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA +VV   + +  +    +    V +   AL  +A         K ++I +TG+ GKTT
Sbjct: 61  GATVVVC--EDLPGLTHAEVTYVVVPNSQEALGVMAANWFDHPSKKLSLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIK---------------KTYACIGSYNNHIGVPLTLARMPVD-VDFGIF 165
              +L    +                  K Y    +  +   +   L  M  + +     
Sbjct: 119 VTSLLYALFTKAGYPSGLISTIKILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + ++R     +    A+ T ++  HL            K  +F+GL  T    +
Sbjct: 179 EVSSHGIAQMRI--KGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDGLSTTAFALV 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     +   + A  +    S+G    ADF+ +  +       +++  Q    EV  
Sbjct: 237 NSDDKNGLFMLQNTKAKKM----SYGLKGVADFKAQILENQFSGQLLKIDQQ----EVWT 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+L      ++L  +    ++ +S      G   R++  +++   T I + 
Sbjct: 289 TLLGQFNAYNILAIYATATLLGLNTLEVLQHISTLENVAG---RFQYFISKNQITAIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   +  + QI    E + I V+G     G+  Q     +  + +  +   V 
Sbjct: 345 YAHTPDALDNILETIGQIRTKNE-KLITVVGC---GGDRDQGKRPLMGAIAAEKS-DTVI 399

Query: 406 LSGFHVL-----ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+  +       A+ + +   +       V   E                D++++  K 
Sbjct: 400 LTSDNPRSETPIAILEQMEAGVSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKG 458


>gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
 gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
          Length = 477

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 170/475 (35%), Gaps = 55/475 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +F D++  I            +  ++ DSR +     F AIKG   DGHD+I  A++K
Sbjct: 1   MISFEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           G+ L++   D+    G   I    V D    L +++  +      K  ++A+TGS GKTT
Sbjct: 61  GSSLIIHTADIKREEG---ISYIKVTDPRKTLAQISNLIYDFPSKKMDLVAVTGSNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIF 165
           T  +++  +  I    A IG+ N  +G  +                    +  ++     
Sbjct: 118 TSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLAL 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     L + R   + +     + T ++  HL     ++    AK  +FE  + T     
Sbjct: 178 EASSHGLDQKRL--YGLDISYGIFTNLSEEHLDYHKTMDNYFKAKMILFENAKTT---IA 232

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + +    K+  L   T+      KNAD++    ++   +   ++    K  E V 
Sbjct: 233 NIDDPYGK----KAKELFSNTVTFAIDEKNADYRAEDIRKEDGKISFKI----KGCEFVI 284

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             I  +   N L     ++ + A ++    A   F   +    R+    N     +I + 
Sbjct: 285 RKIANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKS---RFEYIENDLGINIILD- 340

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +   P + +A    + +       ++IAV G     G+ +  F   +      ++   V 
Sbjct: 341 FAHTPRAYEALFESVPE-----GAKKIAVFG---INGDRNAHFRRLIGNACGKFDTFAVL 392

Query: 406 LSGFHVLALKDALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVVKS 451
            +        D +   I V   +                +       GD V +  
Sbjct: 393 TTDDPKFDDIDHINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLG 447


>gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
 gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
          Length = 498

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 160/453 (35%), Gaps = 37/453 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79
           +  + G+++DSR + P   F A+ G    G  FI  A+ + AG ++ + +        + 
Sbjct: 25  EAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTDAEGARLARDELA 84

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              + +   +D    L + A     R   T++A+TG+ GKT+           + +    
Sbjct: 85  EADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTRQIWYELGEPAVN 144

Query: 140 IGSYN----------NHIGVPLTLAR-MPVDVDFGIFELGM---SHLGEIRFLTHLVRPH 185
           +G+            +    P+TL R +      G+  + M   SH  + R L  +V   
Sbjct: 145 LGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGLDQRRLDGMV-LS 203

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244
               T     HL      E    AK  +F   L   G   +N DD    L+   +   G 
Sbjct: 204 AGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGPLVAQIAEERG- 262

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +   G+   A  +L   +  +    +  + QG+S     + IG   A+N+L+  G+  
Sbjct: 263 QEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAENVLLAAGLAI 322

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              +D      AL       G   R + A  +     +   Y   P ++  A+  L    
Sbjct: 323 GSGSDPAEVFAALGHLQTVRG---RMQLAATRDNGATVFVDYAHTPDAVATAVEALR--- 376

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDAL 418
           PH  GR +A++G   +     +          +  +   V ++  +  +        + L
Sbjct: 377 PHVIGRIVAIVGAGGDRDRTKRPLMGQ----AAAEHADRVIVTDDNPRSEDPATIRAEVL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +             L     L  GD +++  
Sbjct: 433 AGAPGATEVGDRAEAILRGADMLEPGDALLICG 465


>gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
 gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
          Length = 505

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 171/482 (35%), Gaps = 61/482 (12%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P   FFA+ G  +DGHDFI  A+Q G+ +
Sbjct: 14  QDLIKYVKGSL-----DLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + DM     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVHSRDMDFYSPN--VTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARMPVD-VDFGI 164
             + + L         I +                        +   L+ M  + V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI 223
            E     L         V    AV T I   HL     I+   + K  +F  +    G  
Sbjct: 187 LESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFG 246

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD +    K       +K  +++  KS  ADF +    +  + +  E   +G    
Sbjct: 247 VINLDDFYSSEFKN-----AVKKSFTYSLKSSQADFFVSFIDEKIDSTRFEFYYKGVKYF 301

Query: 283 VVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              + +G    +N++  L  +  IL +D+   +  L      +GR         Q F  +
Sbjct: 302 ANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSINL--GQNFSVI 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y   P +      +  + + +   R I+V G   E     +     ++++ S    
Sbjct: 360 ID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQISDIYS---- 410

Query: 402 SHVWLSGFH------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L          +  +KD          +  + +            S    GD+VVV
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470

Query: 450 KS 451
             
Sbjct: 471 LG 472


>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 487

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 153/413 (37%), Gaps = 34/413 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+ IQ   I       +  I  DSR +  +  F  I+G    G  +I  A+Q+GA 
Sbjct: 3   LQELLKGIQVEKIIGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            ++   ++     +       V++   AL  +A        +   ++ +TG+ GKT+   
Sbjct: 63  AILSEKEIAIEGTTT----IKVENSRKALAAVASRFYKFPTNTLKLVGVTGTNGKTSITY 118

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELG 168
           M+   L         IG+ +N I                +   L  M    VD  + E+ 
Sbjct: 119 MVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEVS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R      +  + + T + P HL     ++   +AK ++F   + T    +N D
Sbjct: 179 SHALELGR--VDHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFY--KTTLCNIINVD 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   +++  +     I  + +FG ++ AD      K   +    ++ +   S E      
Sbjct: 235 DIHGKMIAEELKEEQI-PLITFGMNQQADVYATDLKINLKGVSFQLHMGQDSKEFHVKIP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N + ++ I  IL   ++    AL       GR +       Q    +ID  Y  
Sbjct: 294 GLFTVYNAMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEI--QRNSVIID--YAH 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            P +++  +    + +P    R I V G   +  +  +    +++   S Y+I
Sbjct: 350 TPDALENILISTRKFAPK---RIITVFGCGGDRDKTKRRIMGEISGKYSDYSI 399


>gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 495

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 98/470 (20%), Positives = 163/470 (34%), Gaps = 42/470 (8%)

Query: 11  LQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L A+    +G    +  V G+++DSR + P   F A+ G    G  F+  A+  GA  ++
Sbjct: 8   LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67

Query: 70  VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +    A         +  +   +D   AL   A     R  AT++A+TG+ GKT+    
Sbjct: 68  TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127

Query: 126 LTIALSSIKKTYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMS 170
                +++      IG+            +    P+TL R+  D     V     E    
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDD 229
            L E R L   V    A  T     HL      E   +AKA +F   L   GT  +N DD
Sbjct: 188 GL-EQRRL-DGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                + A +   G K I + G    AD +L   +  +    +    QG         IG
Sbjct: 246 PRGPEIAALARDRGQKVIGT-GFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+ +  G+        +             G   R + A  +     +   Y   
Sbjct: 305 GFQAWNVAVAAGLAIGAGDAPERVFATFPQLQGVRG---RMQLAATRQNGASVFVDYAHT 361

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P ++  A+  L    PH  GR I V G     G+  +     +    +  +   ++++  
Sbjct: 362 PDALATALKALR---PHVMGRIIVVFGA---GGDRDRGKRPLMGRAAAD-HADVLYVTDD 414

Query: 409 ----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 415 NPRTEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 464

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 165/397 (41%), Gaps = 13/397 (3%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V +     +     I +  V +V  A  K     R +    I+AITG+ GKTTTKEM+
Sbjct: 62  VIVTDRAYRPTEIPTKIIIIQVANVDEAYWKFVHFYRNQFHIPIVAITGTSGKTTTKEMI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+ ++  A   S N+       L  +  D +  +FE  +   G++       +P I
Sbjct: 122 KHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAVGSPGDVTNAGKYFKPTI 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I   HL+    +E    AK E+ + ++  GT+ +N +D   + L        +  
Sbjct: 182 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAEDMNTKKLDISKFNGRLVK 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G   +  F+    +   +    ++    K+ ++   G G H   N L  +     +
Sbjct: 242 V---GIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGFGQHQVYNALAAIAAAYEI 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A   L  F   + + + +    +     L+D++++    S++AA+ VL+++   
Sbjct: 299 GVPIPVAANQLQSFRQLKKQLQLFEGINH---SMLLDDTWSITTTSLEAALKVLNEL--G 353

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPRSIH 423
              ++IAV+G + ++G      H    E++    +  +   G H   + D    L  +  
Sbjct: 354 DGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLITIGEHARIMADHAVKLGFNAP 413

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V+  +    ++  +Q  + +  +V++K        ++
Sbjct: 414 VYTYKNSTLVYPLLQKIIDENTIVLIKG--DMYSEQV 448


>gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
 gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
          Length = 505

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 171/482 (35%), Gaps = 61/482 (12%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P   FFA+ G  +DGHDFI  A+Q G+ +
Sbjct: 14  QDLIKYVKGSL-----DLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + DM     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVHSRDMDFYSPN--VTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARMPVD-VDFGI 164
             + + L         I +                        +   L+ M  + V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI 223
            E     L         V    AV T I   HL     I+   + K  +F  +    G  
Sbjct: 187 LESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFG 246

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD +    K       +K  +++  KS  ADF +    +  + +  E   +G    
Sbjct: 247 VINLDDFYSSEFKN-----AVKKSFTYSLKSSQADFFVSFINEKIDSTRFEFYYKGVKYF 301

Query: 283 VVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              + +G    +N++  L  +  IL +D+   +  L      +GR         Q F  +
Sbjct: 302 ANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSINL--GQNFSVI 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y   P +      +  + + +   R I+V G   E     +     ++++ S    
Sbjct: 360 ID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQISDIYS---- 410

Query: 402 SHVWLSGFH------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L          +  +KD          +  + +            S    GD+VVV
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470

Query: 450 KS 451
             
Sbjct: 471 LG 472


>gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
 gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
          Length = 555

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 174/480 (36%), Gaps = 52/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DL   +     G      V GI+ DSR++ P + + A+ G    G DF   A   GA
Sbjct: 65  SLADLAGQLGAEQPGSA--AEVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGA 122

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
             V+ +        +  +P   VDD    + +LA     R       I ITG+ GKTTT 
Sbjct: 123 VAVLTDPSGAERAAAAGLPALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTA 182

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRF 177
            ++   L +++ T   IG+    +G     +    P   D       M   G     +  
Sbjct: 183 YLVEGGLRTVRST-GLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVMEV 241

Query: 178 LTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            +H +           +AV   ++P H+   SG+E+   AKA++F   E++    +N DD
Sbjct: 242 SSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTP-ERSRLGVVNLDD 300

Query: 230 SFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
            +   L  ++       + +F      +AD++    +     S   V   +G+ +     
Sbjct: 301 EYGRRLVDEATV----PVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSP 356

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +  +++   D  TA   ++      GR +R     + G   L    Y
Sbjct: 357 LPGSFNVANTLAAVAALAVAGIDPQTAADGVAAVPGVPGRLERV----DAGQPYLAVVDY 412

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                ++++ +  L +++   EGR   VLG     G+   +    +   ++  + + V  
Sbjct: 413 AHKTDAVESVLKALRKVT---EGRLHIVLGC---GGDRDTTKRAPMGAAMARLSDTAVLT 466

Query: 407 SG-----------FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           S              +L    ++P          E          +    GD V+V  K 
Sbjct: 467 SDNPRSEDPLAILATMLEGAASVPAHERGEVLLFEDRAAAIAATVARARPGDTVLVAGKG 526


>gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
 gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
          Length = 487

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 159/459 (34%), Gaps = 45/459 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             FV G++ DSR +     F A+ G   DG DFI  A+ KGA  V+   D  A     S+
Sbjct: 17  DPFVTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAAAVLAPDDTAALESPDSL 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V DV  A    A A         +A+TG+ GKT+         S++ K  A +G+ 
Sbjct: 77  -LVKVSDVRRAYALAAKAFYGSQPKICVAVTGTNGKTSVATFCRQIFSTLGKKSASMGTL 135

Query: 144 N---------------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL 181
                                 +   +   L+ +  D V     E     + + R     
Sbjct: 136 GVVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLALEASSHGIDQRRL--DG 193

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSH 240
           V    A  T +   HL   + +E    AK  +FE L   G T  LN D   +    A   
Sbjct: 194 VSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVLNADSDAYNSFAAMC- 252

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L   ++ S G+       +       +   + ++ QG+  E      G   A N L+  
Sbjct: 253 VLSGTSVMSVGERGRG-LAMVGRDLTVDGQILFIEHQGRKYETKLPLAGLFQASNALVAA 311

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+      D    I ALS+     GR +R     N     +    Y   P  ++   +VL
Sbjct: 312 GLCIAAGEDPGAVIHALSLLKGARGRLERVGAKRNAAEVYV---DYAHTPDGLE---TVL 365

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416
             + PH +G+ + V G     G+  +     +  + +      +             ++ 
Sbjct: 366 KALRPHTQGKLVVVFGC---GGDRDKGKRPQMGAIAARLADRAIVTDDNPRSEDPATIRA 422

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +     E        L   S L  GDV+VV  K 
Sbjct: 423 EVLAGMSSETVEIGDRKKAILEAVSGLKTGDVLVVAGKG 461


>gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
 gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
          Length = 483

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 161/459 (35%), Gaps = 49/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG--SL 81
              + G+  DSR I P + F A  G   DG  FI  AV  GA  VV         G    
Sbjct: 17  DCTITGMQNDSRLIQPGDLFVAYPGSAADGRLFIAKAVSAGAVAVVYEPANFPIDGVLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           SIP   V D+   L  +A A      +  TI  ITG+ GKTT    L  A   + +  A 
Sbjct: 77  SIPCIAVPDLATKLAYIAKAFYDDPENSLTITGITGTNGKTTIAYQLAQAHHLLGQGAAY 136

Query: 140 IGSYNN-----------HIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVR 183
           IG+                   L L ++              E+    L + R     + 
Sbjct: 137 IGTIGQGNVNELQPLDNTTPDSLRLQKLLHQYKEQGLKQVCMEVSSHALAQHR--VDALT 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ T +   HL     +E  A+AKA +F G E      +N DD + +++ A      
Sbjct: 195 FKQAIFTNLTLDHLDYHHNMENYAAAKAILFSG-ESLQWAIINQDDEYQQVMAAALKPHV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   ++G  ++ D +   W+     + ++V        +    +G     N L     +
Sbjct: 254 KK--LTYGLREDCDVKAVNWRMDINGTEIDVHSPWGQHHLRIKALGAFNIYNSLAVFSSL 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +  +  +S      GR +    A        +   Y   P +++ A+  L QI
Sbjct: 312 LASGYAPEKVVAVMSQLKAAPGRLEIVASA------PYVLVDYAHTPDALENALVTLGQI 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
               +GR   V G     G+  +S    + ++ SL N   + ++  +         +  +
Sbjct: 366 K---KGRLWVVFGC---GGDRDKSKRPMMGKIASL-NADKIIITSDNPRTEDPQTIIEEI 418

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + HV      +    +   +    D++++  K 
Sbjct: 419 IHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKG 457


>gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes 266]
          Length = 529

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 156/456 (34%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 46  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 105

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 106 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 165

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 166 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQR--VDGTCFD 223

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 224 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 282

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W+     +  +V        +     G    +N  M L ++  
Sbjct: 283 AVTT-SIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 341

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 342 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 395

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 396 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 451

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 452 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 486


>gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
 gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
          Length = 251

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/239 (34%), Positives = 127/239 (53%), Gaps = 10/239 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S D+R +  +  +FA+KG ++DG+ F+  AV+ GA   VV+ +      +       
Sbjct: 14  NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVDDEDAMINENC----IL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+DVL  L +LA   R      II++TGS GKTTTKE++   L++     A +G+ NNHI
Sbjct: 70  VEDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     D+DFGI E+G +H  EI FL ++ +P   +IT    AHL  F  IE I 
Sbjct: 130 GVPLTLLSFSEDLDFGIVEMGANHQKEIEFLCNIAQPDYGLITNFGKAHLEGFGSIEGII 189

Query: 208 SAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             K+E+++ L      +F+N +D      K  +         +FG + + ++ L   K 
Sbjct: 190 KGKSELYDFLRNNNKLVFINTNDE-----KQINQINKYSKTITFGSNIDNNWFLLSLKS 243


>gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
 gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
          Length = 495

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 148/407 (36%), Gaps = 32/407 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA--SIGSL 81
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         S+   
Sbjct: 19  DVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +I V G+   LGA+             T++ +TG+ GKT+T ++L  A   +    A  G
Sbjct: 79  AIAVHGLRARLGAMADRF-HGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 137

Query: 142 SYNNHIGVPLT---------------LARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +    +   +                LA++  +    +  E+    L + R     V   
Sbjct: 138 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGR--VDGVHYD 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V T +   HL     +E   +AKA +F   +      +N DD F   L         +
Sbjct: 196 VVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRR 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S     +AD   +      +    ++ +      V    +G     N+L   G++  
Sbjct: 255 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYA 314

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +      LS   P  GR  R      Q    ++   Y   P ++     VLS +S 
Sbjct: 315 LNYALSEIAAVLSTLRPIHGRMNRL---GGQDGQPVVVVDYAHTPDALG---QVLSSLSS 368

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           H  GR I V G   E     +S    +AE     N   V+++  +  
Sbjct: 369 HVCGRLICVFGCGGERDRGKRSQMAVIAE----SNADVVFVTDDNPR 411


>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
 gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
          Length = 509

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/411 (23%), Positives = 152/411 (36%), Gaps = 33/411 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL  +    +   P   V  ++ DSR + P   F AI+G H DGH FI  A+ +GA
Sbjct: 5   TLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
             VVV+             V  V D   AL  LA A         T I ITG+ GK+TT 
Sbjct: 65  VAVVVDQRYWDERPVAVP-VVVVADSRVALAPLAAAFYDYPGRELTTIGITGTKGKSTTT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARM-PVDVDFGIF 165
           ++    L++  +    I + +  I                  V   L  M     D  + 
Sbjct: 124 DVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGCDTAVI 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TGT 222
           E     L             +AV+  I   HL      E+  + KA++F  L +   +  
Sbjct: 184 EATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSGSRW 243

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD         + A  ++    +G  + AD Q +        S + V     + +
Sbjct: 244 AIVNADDPNHAYFLDAAPADAVR--LRYGLHEPADVQGQILHSGPMSSVVRVTSPWGTTD 301

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G   A N L  L +   L+  V     A ++   +  RG+       Q F  ++
Sbjct: 302 LTVPLPGRFNASNALAALTVA--LSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIV 359

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           D  Y  NP S +    + + + P  +GR IAV G   E     ++   ++A
Sbjct: 360 D--YAHNPDSFE---QIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIA 405


>gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. AS9601]
          Length = 511

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 172/485 (35%), Gaps = 50/485 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV-DDVLGALNK---LAVAARLRSKATIIAITGSVGKTTT 122
             ++       IGS+      V +D L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGPAAKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFE 166
             +L   L  + K  A  G+  N       +                A +  + +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE-KTGTI 223
           +    + + R          A+ T +   HL     +E     K ++F    L+ K G  
Sbjct: 186 VSSHSIAQNRI--SGCEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGIC 243

Query: 224 FLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L +  K  +L + T  +  + +N D F +   K     S        + 
Sbjct: 244 VLNHDDHWISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    +G     N +  + I+  L   +    K +  F    GR ++ +   N    +
Sbjct: 304 IQLFVPLVGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRS 363

Query: 341 L--IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           L  +   Y   P  +K  +  + ++    EG+ I V G   +     +     +AE LS 
Sbjct: 364 LPTVIVDYAHTPDGLKKVLQSIKKL---CEGKLITVFGCGGDRDRSKRPLMGSIAEELS- 419

Query: 399 YNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                ++++  +             L     R   +   +    +   IQ      D+V+
Sbjct: 420 ---DQLFITSDNPRTEEPQKIVNDILMGIKKREKIIIEIDRFKAINESIQ-FANKKDIVL 475

Query: 449 V--KS 451
           +  K 
Sbjct: 476 IAGKG 480


>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
 gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
          Length = 494

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 161/479 (33%), Gaps = 49/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   LLQ I    +  V    ++G+  DSR +   +AF A+ G       +I  A+  
Sbjct: 3   ITSLSTLLQGIA--PVPSVFDVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISA 60

Query: 64  GAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA ++++      +     G L +PV  +   LG +           +  +I +TG+ GK
Sbjct: 61  GATVILLESAQPDECYEHEGVLIVPVTALRAHLGKIADRFFEH-PSQRLRLIGVTGTNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDV---------------DFG 163
           T+    +   L         IG+    +   L   A    DV                  
Sbjct: 120 TSVSHYIATLLQETGTPCGVIGTLGYGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAA 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L + R     +    AV T +   HL     ++   +AKA +F   E+    
Sbjct: 180 AMEVSSHALEQGR--VDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLFHR-EELHFA 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N+DD F   L  K      +  YS  +++  +  L ++    +     V        V
Sbjct: 237 VINFDDPFGRQLYEKLDGKCDRVRYSLHEAQT-ELWLTEFAPSIDGFSASVDGLWGRFNV 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  +  V  L   V+   +A+    P  GR + +           + 
Sbjct: 296 SARVLGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPF----AGSNDVRVV 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++ +A++ L    PH  GR   V G     G+       ++A          
Sbjct: 352 VDYAHTPDALNSALAALR---PHVGGRLFCVFGC---GGDRDTGKRPEMAREA-ERGADV 404

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +  +         +         +               S V GD+V+V  K 
Sbjct: 405 VIVTDDNPRSEDPDAITSDIVAGFEHPEQIAVIHDRAEAIRQAIHSAVAGDIVLVAGKG 463


>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 507

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 166/488 (34%), Gaps = 52/488 (10%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               D+L       + G      V G++ DSR + P + F A+ G   DG  ++  AV +
Sbjct: 1   MKLTDVLAGCGAEQVSGGRSSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  VV        +GS  +P F V     AL  +A     R   + T++ +TG+ GKTT
Sbjct: 61  GAVAVVSEK----PVGSSQVPFFKVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM-----PVDVDFGIF 165
           T  +L    ++   +   IG+    +             PL L R+        V+  + 
Sbjct: 117 TTYLLEAISAAAYASTGVIGTLGYKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIF 224
           E+    L  ++   H +    A  T +   HL     IEE   AK  +F E L  TG   
Sbjct: 177 EVSSHAL--VQERVHGLTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD++   +  +      +  + F +    +          +     ++     + V 
Sbjct: 235 VNGDDTYASRIYNELRGQK-RMAWKFSRQGAGEISAADVSFSLQGIKATLKTPAGDIPVK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  +N+L   G+              +       GR +R       G    +  
Sbjct: 294 SRLVGPHNLENILAATGVALGAGIARRDVQTGIERMGGLPGRMERVE-NYMPGPAPAVLV 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEVLS 397
            Y     ++K A+     ++   +GR I V G   +  +        + +   DL  V S
Sbjct: 353 DYAHTDDALKRALEASRTLA---KGRVIVVFGCGGDRDKGKRPLMGTAAAEGADLVVVTS 409

Query: 398 -------LYNISHVWLSGFH---VLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGD 445
                     I      G     +  +     +S    Y    D             + D
Sbjct: 410 DNPRTEDPAEIIEQVTPGLEKGGLRRISAGKAKSGEKGYLVDADRRAAIETAVGLAREDD 469

Query: 446 VVVV--KS 451
           VV+V  K 
Sbjct: 470 VVLVAGKG 477


>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
 gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
          Length = 496

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 173/477 (36%), Gaps = 43/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL A+ G     +    + G+  +S +    + F  + G   DG DF   A+  G
Sbjct: 1   MKLRELLAAVDGVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASG 60

Query: 65  A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           A   +V    +  +  +    V    D+  A  +LA         K  ++ +TG+ GKTT
Sbjct: 61  ALAAIVSPAALQKNPPTGEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIF 165
           T  ++   L+    + A +G+           A                 +    +FG  
Sbjct: 121 TTHLIEFLLTKANLSTALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEAVNAGCEFGAM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R L       +AV + +   HL   + +E+  +AKA +F      G   +
Sbjct: 181 EVSSHALAQGRVL--GCEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGRAII 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD + + L A   +L  + ++S+  + + AD  +             +     ++   
Sbjct: 239 NADDDYGQRLIA---SLSSERVWSYSVNNHSADLWMSDLSYEPNGVSGMLHTPKGNVAFR 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G +  +N+L  +G V  L  D+     A+  F    GR +R +    Q    ++D 
Sbjct: 296 SPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEISVIVD- 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++   ++L    P   G+ I V G     G+  ++    + ++ +      V
Sbjct: 355 -YAHTPDSLE---NLLKAARPFIPGKMICVFGC---GGDRDRTKRPKMGKIAAELADVAV 407

Query: 405 WLSG----FHVLALKDALPRSIHVHYSETM--DGLFLFIQSSL--VDGDVVVV--KS 451
             S          +   +   I      T+  D       + L    GD V++  K 
Sbjct: 408 LTSDNPRTEDPERILQDVLAGIPDTVKPTVICDRAIAIRTAILQAQPGDGVLLAGKG 464


>gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
 gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
          Length = 484

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 163/460 (35%), Gaps = 60/460 (13%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V G++ ++  +     F  +KG  +DGH      + KGA ++V + D+      
Sbjct: 17  GTQNAVVTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDIKCG--- 73

Query: 81  LSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                   D+    L +L  +   +   K  ++A+TG+ GKTTT   +   L+++ K   
Sbjct: 74  ---KQLVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCG 130

Query: 139 CIGSYNNHI---------GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFL 178
           C+G+  N               T+ R  V             D+ + E     L + R  
Sbjct: 131 CVGTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVMEASSQALDQYRIG 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +A  T +   HL     +E    AK  +F   +   T  +N DD + + L  +
Sbjct: 191 DERIA--VAGFTNLTRDHLDYHGTMENYFQAKRRVFTMCK---TAVINIDDEYGKRLAQE 245

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNM 296
              + +    ++    NAD+     +  +      +  + +        +  G +  QN 
Sbjct: 246 FSDIAV----TYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQNS 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +V+ L  D+    KALS     +GR         +G FT+I + Y     ++   
Sbjct: 302 LCAIAMVTALGFDMTECAKALSDLDGVDGRMNVV----YRGDFTVITD-YAHTDDAL--- 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------S 407
           I VLS + P  +GR I V G     G+  +     +A+  +  N   + +          
Sbjct: 354 IKVLSTLKPLTKGRLICVFGA---AGDRDKEKRPMMAK-AAEDNADILVITSDNPAHENP 409

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              +  +   +                 +   +    DV+
Sbjct: 410 DEIIREVMTGISGKKPCRCITDRREAIAYALDTARKDDVI 449


>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
 gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
          Length = 487

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 160/472 (33%), Gaps = 39/472 (8%)

Query: 5   WTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               D+         G   G +    + G+S DSR +AP  AF A+ G   DG  FI  A
Sbjct: 1   MNLRDIAGNTFPELNGQVGGALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFIADA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA +V+              P+  VD+    L   A     +   T++A+TG+ GKT
Sbjct: 61  VSRGASVVIAG----NGAAVTGAPLLTVDEPRRFLAVAASRFYGKQPETMVAVTGTAGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN-----------HIGVPLTLARM-----PVDVDFGI 164
           +         +      A IG+                  P++L ++        V    
Sbjct: 117 SVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALADEGVTHAA 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTI 223
            E     L + R     VR   A  T +   H+     +E+  +AK  +F + L K    
Sbjct: 177 MEASSHGLDQFRL--DGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLPKGSPA 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  DD + E   A +   G + I + G+  +    L++ +    +   EV +     E+
Sbjct: 235 VIFADDPWSEQAIAAARDTG-QDIRTVGRKGDF-LALKRVEHFRHKQIAEVHIGDDIFEI 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L+  G+          A  A++      G   R     +     L  
Sbjct: 293 HIPLAGDFQVANALVAAGLAISTGV---AAPVAMAALEKLVGAAGRLELVGHTHDGALAY 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
             Y   P +++   +VL+ + P   GR I V G   +     +    ++A  L+   I  
Sbjct: 350 VDYAHKPDALE---NVLTSVRPFTTGRIIVVFGCGGDRDRGKRPIMGEIACRLADVVIVT 406

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                S        + +  +                 S L  GD ++V  K 
Sbjct: 407 DDNPRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKG 458


>gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 489

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 166/466 (35%), Gaps = 44/466 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + ++    V  + +DSR +   + F A+KG  +D   F+  ++  GA  VV+ TD+   
Sbjct: 9   DLPVLSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENE 68

Query: 78  I----GSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                   ++PV     +   L+ L          K T++ +TG+ GKTT  ++L    +
Sbjct: 69  HLSIQWQNNVPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWAT 128

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
                 A +G+  N +   +  A+        + E              + +S  G ++ 
Sbjct: 129 LFGHKAAVMGTIGNGLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQH 188

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               ++   A+ T ++  HL     +E+ A AK   F  L       LN DD       +
Sbjct: 189 RVEALKFKAAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPE-LQILNADDPIGAAWLS 247

Query: 238 K-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +  + + +     F  +        +     E + ++V     +  +    IG     N+
Sbjct: 248 ELPNGIAVSCRPDFQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNL 307

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+   ++  L    D  I+ +S      G   R       G  T+I + Y   P +++ A
Sbjct: 308 LLATAVLLALGYSFDELIRTVSQLKGVNG---RMELIKKAGKPTVIVD-YAHTPDALEKA 363

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
           ++   +   H +G+   + G   +     +      AE  +      V ++  +      
Sbjct: 364 LNAARE---HCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFA----DLVIVTQDNPRTEDP 416

Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +     R   V      +    F   + V+ DV+V+  K 
Sbjct: 417 NKIEADILTGFSRMEDVGVIPDREEAIKFTIENAVENDVIVIAGKG 462


>gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM
           273]
 gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 169/484 (34%), Gaps = 42/484 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+    ++L+ +  + +  G      V  ++ DSR + P   F A++G   DG  FI 
Sbjct: 10  MQPV-ALREILRGMGAYEVAAGQTDGVMVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIK 68

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGS 116
            A+ +GA  V V+ D    +     P   V D   AL+  A         +  I+ +TG+
Sbjct: 69  DAIARGASAV-VSEDFPMELALNGPPCIRVPDARRALSLAAAAYYGHPADRLRIVGVTGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSY-----NNHIGVPLT---------LARMPVDVDF 162
            GKTTT  +++  LS    +   IG+      +  I +  T         L RM VD   
Sbjct: 128 NGKTTTARLISSILSMNGISCGYIGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGC 187

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S         H +    AV T + P HL     +E  A AK ++F+ L   G 
Sbjct: 188 RAVSMEVSSHALELGRVHGIAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPGGI 247

Query: 223 IFLNYDDSFFELLKAKS----HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQ 277
              N +D     + A+      A        FG  +   ++     ++    S + +   
Sbjct: 248 GIFNTEDPMATFMAARVAEEQRACCSLDAAGFGGMRCGLNYGAMVRREGVGSSVVALSFP 307

Query: 278 -GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G   E     +G     NML        L         +L      EGR ++      +
Sbjct: 308 EGVQPEEEFRLLGRFNVMNMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEGPGFE 367

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   +    Y   P ++  ++  L ++ P  +GR + V G     G   +    ++  + 
Sbjct: 368 GTAIV---DYAHTPDALHQSLGTLRELLP-PDGRLLVVFGC---GGNRDRQKRPEMGRIA 420

Query: 397 SLYNISHVWLS----GFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV 449
                  V  S         A+ D +   +                     L  GD+++V
Sbjct: 421 IEMADFSVITSDNPRDEDPEAILDEIEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLV 480

Query: 450 --KS 451
             K 
Sbjct: 481 AGKG 484


>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
 gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
          Length = 485

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 173/457 (37%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IG 132

Query: 142 SYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +  A                 +   +++ + E+  SH  EI     +V   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VEVVDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+      +N DD + + L  +   +   
Sbjct: 191 YALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDE-FIVDNP 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G     D +        +  +++++ + +  ++    +G     N L  +GI   
Sbjct: 250 EIISYGID-GGDLEGEYL----DDGYIDIKYKEQVEKIKFALLGDFNLYNTLGAIGIALK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I  
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC--GQDYKVIVD--YAHTPDALVNVIVAARNIKN 360

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
               R I + G   +     +     +AE LS      V L+  +            +K 
Sbjct: 361 VN--RVITIFGCGGDRDRTKRPIMAKVAEDLS----DIVILTSDNPRTESPEQIFDDVKK 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +S    +    +       +     D++++  K 
Sbjct: 415 GFIKSDDYFFEPDREKAIKVAVNMAEKNDIILITGKG 451


>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
 gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
          Length = 509

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 168/482 (34%), Gaps = 47/482 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           P     +LL  +   S+    Q     + G++ +S +    + F  + G   DG DF   
Sbjct: 9   PNMKLRELLAKVSSISLTNNYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDFWKS 68

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117
           A+  GA   +V+        + +  V  V D+     ++A A       K  ++ ITG+ 
Sbjct: 69  AIANGAVGAIVSVSAATKHPAKNECVIPVADMSQTCPEIAAAFYDYPGQKMKMVGITGTN 128

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVD 161
           GKTTT  ++   L++ +   A  G+           A                 +     
Sbjct: 129 GKTTTTHLVEFILNNAQLPTALFGTLYMRWPGFQKTAAYTTSFPVELQNQLAQALAAGSK 188

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +GI E+    L + R         +AV T +   HL     +++   AKA +F      G
Sbjct: 189 YGIMEVSSHSLDQKR--VWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSDYLKG 246

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKS 280
              +N DD + + L A+   L  + ++S+  S  + D      +         +      
Sbjct: 247 RAIVNADDPYGQKLIAR---LESEKVWSYSTSDTSTDLWASDLEYKPTGVKGMLHTPKGE 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M      +G +   NML  +G    L  D+   +  LS F    GR +R +    Q    
Sbjct: 304 MIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDVSV 363

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   P S++   ++L    P   GR I V G     G+  ++    + ++ +  +
Sbjct: 364 IVD--YAHTPDSLE---NLLKAARPFIPGRMICVFGC---GGDRDRTKRPKMGKIAAELS 415

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
                +S  +            + + +   +                     GD V++  
Sbjct: 416 -DLAVVSSDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAG 474

Query: 450 KS 451
           K 
Sbjct: 475 KG 476


>gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 490

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 145/394 (36%), Gaps = 36/394 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I   PQ ++ GISI S+ +     FFA KG   DGH FI  A+QKGA  VV     V  +
Sbjct: 17  IIGNPQKWIKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPV--L 74

Query: 79  GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              +I    V + + AL  ++         K  ++ ITG+ GKT+   +L      + + 
Sbjct: 75  LHKNITYVIVKNSMDALGTISSNFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEK 134

Query: 137 YACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTH 180
              I +    I       +                      +   E+  SH    + +  
Sbjct: 135 SILISTMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVS-SHGIHQKRIAG 193

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
           L+     V+T I   HL      E   S K   FE  L K     +N DD     +    
Sbjct: 194 LL-FTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEIIKNV 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     IY +G  K  D++++  K+    + + +       +     IG     N+L  
Sbjct: 253 LA----KIYFYGLKKKTDYRIKIMKKNIHGNQLLID----GHKFFTFLIGEFNVSNLLAC 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +L    +  ++ ++   P +G   R+   ++     +I + Y  NP  +K  +  
Sbjct: 305 YATAILLGKKKEEILQKINTIPPIKG---RFEQFISYSGIRIIVD-YAHNPDGIKNLLKA 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + +I    E R I ++G      +  +S    + 
Sbjct: 361 IQEIKKQEE-RLICIIGCGGNRDKEKRSLMGKIV 393


>gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
 gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
          Length = 498

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 153/456 (33%), Gaps = 41/456 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + I+ DSR   P   F A  G   DG  F+  AV  GA  ++          +L++P FG
Sbjct: 18  DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDGDGFCAPALAVPGFG 77

Query: 88  VDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V  +      LA     R      +  +TG+ GKTT  +ML  AL  + +    +G+   
Sbjct: 78  VRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVGTLGC 137

Query: 146 HIGVPL------TLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHIAVITT 191
                L      T   + +   F  F         + +S +G  +   +  +  +A+ T 
Sbjct: 138 GFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVAIFTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E  A+AKA +FE   +     +N DD +   L  +    G   I    
Sbjct: 198 LSRDHLDYHGTMEAYAAAKARLFER-PELSACVINIDDPWGLALARRLVVEGRAVIACTL 256

Query: 252 KSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + NAD        +  + +         +  +G+  E+    + +    N++   G + 
Sbjct: 257 YAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAVAGALL 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D     L    P +GR +            L+   Y  +P ++   +  L    
Sbjct: 317 ARGIAFDELPPVLGRLAPPQGRMQLV----GGVCEPLVVIDYAHSPDALAKVLEALRGTV 372

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------LKDA 417
               GR + V G   +     +    ++A  ++      V ++  +  +          A
Sbjct: 373 HSRRGRLVCVFGCGGDRDPGKRPMMGEIASAIA----DRVVITSDNPRSEDPQRIVEAIA 428

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                      DVV++  K 
Sbjct: 429 AGAGAAAECVVDRAQAITRAVGEARADDVVLIAGKG 464


>gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 493

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 175/484 (36%), Gaps = 55/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL         +     ++ +++DSR ++P   F AIKG   DG  FI  A+++
Sbjct: 1   MMQLSELL----LPWCDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQ 56

Query: 64  GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSV 117
           GA  V+ + D     G++ +     V  +D +   L+ +A A     +    ++ ITG+ 
Sbjct: 57  GAVAVIADADKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNN---------------HIGVPLTLARMPVDVDF 162
           GKTT  +++    + +++  A +G+  N                I +  TL  +  ++  
Sbjct: 117 GKTTISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL-ENIGA 175

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  L +S  G ++   + +    AV T ++  HL     +   A AK  +F       +
Sbjct: 176 KLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNS 235

Query: 223 IFLNYDDSFF-ELLKAKSHALGI---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             +N DD    + LK   HA+ +   +   SF   K            +E   + +    
Sbjct: 236 -IINGDDQVGCQWLKEMPHAVAVSLNEENISFHSGKK--VFATSVVYSTEGIKLSISSDW 292

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++      IG   A N+L+    +  L  D+    +  S  +   GR + +        
Sbjct: 293 GNVAFSVPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATDNKAKV 352

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                  Y   P ++  A+  L     H EG+   + G   +     +     + E    
Sbjct: 353 VV----DYAHTPDALDKALQALR---VHCEGKLWCIFGCGGDRDTGKRPIMASIVE---- 401

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + LS  +  +         +   L  +   H          F  S   + D++++
Sbjct: 402 QQADAIILSDDNPRSEEPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILL 461

Query: 450 --KS 451
             K 
Sbjct: 462 AGKG 465


>gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
 gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
          Length = 484

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 132/384 (34%), Gaps = 37/384 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L + I+G +   +P   ++GI+ D+R  +     F  IKG  +DGHD     + KG  +V
Sbjct: 9   LYELIKGVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGCAVV 68

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEML 126
           V   D+             V D   A   L  A       +  +I +TG+ GKTT   ++
Sbjct: 69  VCERDLGLER------QIVVSDTRAAFPMLCAAWFGHPERELELIGVTGTNGKTTITTVI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHL 172
              LS        IG+  N IG  +               L R   D       + +S  
Sbjct: 123 KKVLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAGCKYTVMEVSSQ 182

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +         + V T +   HL     +E    AK  +F+    + +  +N DD + 
Sbjct: 183 GLEQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLFDI---SDSAIINIDDEYG 239

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                +          S+  + +ADF  +     +               V  +  G   
Sbjct: 240 RRYAKEIPC----PYKSYSVNGSADFMAQDVMLGTAGVKYVFDDGRVKKNVSFNMPGLFN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +  + +L       I+         G   R         FT+I + Y   P +
Sbjct: 296 VSNSLAVIACMEVLGYTPCQTIREFEKIQGVRG---RAEIVPTGRDFTVICD-YAHTPDA 351

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +   I+VLS I    +G+   + G
Sbjct: 352 L---INVLSAIKEGAKGKVKCLFG 372


>gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Delftia acidovorans SPH-1]
 gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans
           SPH-1]
          Length = 509

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 157/464 (33%), Gaps = 52/464 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T  + +Q +     G         +  DSR + P +AF A  G   DG   +  A+++
Sbjct: 10  LSTATEAVQWLAARLQGSGT------LQTDSRKVRPGDAFIAWPGGATDGRAHVASALER 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA   +V    V + G     +  +  +  A   +A        ++  ++A+TG+ GKTT
Sbjct: 64  GAMACLVEAQGVEAFGFSGEHIAALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTT 123

Query: 122 TKEMLTIALSSIK----KTYACIGSYNNHIGVPLTLARMP--------------VDVDFG 163
           T   L  AL+ +K       A +G+    I   +    M                D    
Sbjct: 124 TAWWLAHALAQVKLQERSGCALVGTLGVGIPPAMESTGMTTPDPVRLQRAFREYADAGLA 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S +G +       R  +A+ T     HL     ++    AKA +F+        
Sbjct: 184 ACAIEASSIGIVEHRLDGTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFDW-PGLQAA 242

Query: 224 FLNYDDSFFELLKAKSHALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD+    L A   +        ++S      A  Q +     +E     V   G S
Sbjct: 243 VVNVDDAHGARLWATLQSRKQPAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHS 302

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    +G +   N+L  L  +  L   +D A+ A     P  GR ++      Q    
Sbjct: 303 LRMHTRMVGQYNVSNLLGVLAALRCLGLTLDQAVAACVHLEPVPGRMQQIV----QPGQP 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+   Y   P ++  A+  L   +    GR   V G   +     +          +  N
Sbjct: 359 LVAVDYAHTPDALDKALRALRPAAEQRRGRLWCVFGCGGDRDATKRPLMGQ----AAQKN 414

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              V ++  +                SE  D +   I + +  G
Sbjct: 415 ADCVLVTSDNPR--------------SEVPDRIIDQILAGMQPG 444


>gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 501

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 61/475 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             + G++ DSR +     F AI G   DG++FI  AVQKGA ++    D+          
Sbjct: 6   IEIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIKD----CI 61

Query: 85  VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D    L  L          K  +I +TG+ GKTTT  ++   L    K    IG+
Sbjct: 62  VKKVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAGLIGT 121

Query: 143 YNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               IG     +++                   V   + E+    L   R   H +   I
Sbjct: 122 LFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNR--VHGIDFDI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T I   HL+    I +  ++K ++F+ L +     +N+DD +   +      +    
Sbjct: 180 AIHTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILA-- 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWM-----------EVQLQGKSMEVVHHGIGYHMAQN 295
             ++G S  +             S+             V+++     V  + IG H   N
Sbjct: 238 -ITYGLSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYN 296

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+ +    +L   +D  ++++  +   +   +R +      F  +  + Y  NP+S +A
Sbjct: 297 ALLAISTCLLLNIPIDKIVQSIKNYPAVQ---RRMQIIYRDKFTVI--DDYCHNPSSYEA 351

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWL------SG 408
             + +  +  +       V G     G      + ++ +    + NI  + +        
Sbjct: 352 VFNAIQNLQYNN---LHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDFID 408

Query: 409 FHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               AL++            +I   Y   +          L  GD++++  + S 
Sbjct: 409 PMNSALEEEKNICFEVFNSSAIPFQYERNLRDAIEEGIRDLRQGDILLLLGAQSM 463


>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
 gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
          Length = 509

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/493 (19%), Positives = 182/493 (36%), Gaps = 61/493 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + +   ++       +NG+  DSR +     FFA+KG   DGHDFI  A ++G
Sbjct: 1   MRLEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV+  +  A  G        V D   A++++A     +      ++ ITG+ GKTTT
Sbjct: 61  AVAVVLEDETRAPCGMEW---IRVGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167
             ++   +S      A +G+ +                 + +  T+  +  +    +   
Sbjct: 118 TYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVME 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF------EGLEKTG 221
             SH  E R      R  +AV T +   HL     +E    +KA +F      +G++   
Sbjct: 178 VSSHALEQRR-VDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRR 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DDS+   L   + A     + S+G + +A  +        +     +     + 
Sbjct: 237 AAAINRDDSYGARLVETAVA----PVISYGLAADAAVRAENVVFSVDGIAGTLVTPFGTA 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               H +G     N+L  +     L   +D  +  +       GR +R     N+   T+
Sbjct: 293 PFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERV---HNERGVTV 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---- 397
           + + Y     +++  +  +S+++    GR I V G   +     +    +++   S    
Sbjct: 350 LVD-YAHTGDALENVLKTVSELAT---GRIITVFGCGGDRDRGKRPVMAEISGRYSHLTI 405

Query: 398 ----------LYNISHVWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSS 440
                        I    L+G   + L++   R ++  + E       +         + 
Sbjct: 406 VTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATV 465

Query: 441 LVDGDVVVV--KS 451
            V GD+V++  K 
Sbjct: 466 AVAGDIVLLAGKG 478


>gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 488

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 166/470 (35%), Gaps = 54/470 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----M 74
           I I     +  +++DSR+      F AIKG   DG  +I  A+Q GA  V+   D     
Sbjct: 10  IHIAENVNLTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQH 69

Query: 75  VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +       +P+     +   L+ LA     +   + T++ +TG+ GKTTT ++L      
Sbjct: 70  LQVRYEQQVPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKI 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIR 176
           +  T A +G+  N +   +  A                      DF   E+     G ++
Sbjct: 130 LGHTSAVMGTIGNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSH--GLVQ 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V    AV T ++  HL     +E  A+AK  +F  L+      ++ DD       
Sbjct: 188 HRVEAVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHH-IIDADDPVGAAWL 246

Query: 237 AKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           A+              S NADF        +        + + ++ +    + E+    I
Sbjct: 247 AEMPEA-------VAVSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALI 299

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L+ +  +  L  D+   I +        GR +           T+I + Y  
Sbjct: 300 GAFNVSNLLLIMATLLALGYDLAELIGSAHKLTGVCGRMEMLHAPHKP---TVIVD-YAH 355

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWL 406
            P +++ A+        H  G+   + G   +     +     +AE L+   I       
Sbjct: 356 TPDALEKALQA---ARLHCHGKLWCIFGCGGDRDSGKRPLMAKIAEQLADKVIATDDNPR 412

Query: 407 SGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  H   + D L   IH   V      +        S V+ DV+++  K 
Sbjct: 413 TEDHTQIMADILKGFIHPQAVQVIHQREEAIATAIQSAVENDVILIAGKG 462


>gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
 gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
          Length = 490

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIG 79
              V+ ++ DSR +     F A+ G    G DFI +A++ GAG ++ +          + 
Sbjct: 17  DVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTDRAGAEIAATDLA 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +    +  V+D   AL   A         T++A+TG+ GKT+          ++      
Sbjct: 77  ATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTRQIWEALGVPAVN 136

Query: 140 IGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
           IG+            +    P+TL R+  +     V     E     L + R     VR 
Sbjct: 137 IGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGLDQKRM--DGVRL 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T +   HL     +E    AK  +F G L   G   +N DD     +       G
Sbjct: 195 AAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGLRVAEACSTRG 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I+ +    +   A  ++   +       +  + QG + +V  + IG   A N+L   G+V
Sbjct: 255 IE-VIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAMNVLTAAGLV 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D +      +V H  EG   R + A  +     I   Y+  P S++ A+  L   
Sbjct: 314 IAGGEDPEDV---FAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTPDSLEVALKALR-- 368

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA-L 418
            PH  GR + V G     G+   +    +    +L++                A++ A L
Sbjct: 369 -PHVLGRLVVVFGA---GGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAAIRAAVL 424

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           L     L  GD +++  K 
Sbjct: 425 AGCPEATVVADRAEAILRAVDMLEPGDALLIAGKG 459


>gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
 gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
          Length = 494

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 157/456 (34%), Gaps = 46/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           V  + +DSR+I   + F AI G   DG  FI  AV +GA  VV       + G +     
Sbjct: 27  VEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWLNA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  V ++   L++LA          +I +TG+ GKTT  +++   L  + +  A +G+
Sbjct: 87  VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFLTHLVRPHI 186
             N                I +  TL+ +  +    ++  + +S  G ++     +   +
Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAEE--SAVYTAMEISSHGLVQGRVKALNFEV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T ++  HL     +EE A AK  +F    K     +N DD   +   A        +
Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKRLFTQ-HKCKHAVINVDDEVGKAWMADLSNAIAVS 263

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +      + +               +         ++    IG   A N+L+    +  L
Sbjct: 264 LLPLSDYQQS-VWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFATLLSL 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  T +   S   P  GR + ++              Y   P +++ A++ L     H
Sbjct: 323 GIDKQTLVDTASQLQPVIGRMELFQVPSKAKVVV----DYAHTPDALEKALAALR---VH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
             G+  A+ G   +     +      AE  +      + +S  +  +         +   
Sbjct: 376 CSGKLWAIFGCGGDRDTGKRPMMAVTAEQFA----DKIIISDDNPRSEDPALIVKDMLAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L                 F        D++++  K 
Sbjct: 432 LSEPESAFVEHDRYQAVKFALEQAGSNDIILLAGKG 467


>gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 487

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 155/453 (34%), Gaps = 41/453 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82
           + GI++DSR +     F A+ G    G +FI +A++  AG ++ +          + +  
Sbjct: 16  ITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTDAVGAEIAADELANSD 75

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KT 136
             +   DD   AL   +          + A+TG+ GKT+    +    + +        T
Sbjct: 76  AAIIVTDDPRSALAFASALYFGAQPQIMTAVTGTNGKTSVSTFVRQIWNLLDLEAVNLGT 135

Query: 137 YACIGSYN----NHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               GS +    +    P+TL R         +     E     L + R     V    A
Sbjct: 136 TGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGLDQRRL--DGVNLAAA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T     HL      E    AK  +F   L+  G   +N DD     +   + A G   
Sbjct: 194 GFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGAEVAMIAQAHG-HE 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G+   AD  L   +      ++  +   +  +   + IG   A+N+L+  G+V   
Sbjct: 253 LIGVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAENVLLAAGLVIAC 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D       L       G   R + A  +     +   Y   P +++ A+     + PH
Sbjct: 313 GEDPARVFDTLGDLETVHG---RMQLAATRTNGAAVFVDYAHTPDAVETALKA---MRPH 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422
             GR +A++G   +     +          +  N   V+++  +  +   AL R+     
Sbjct: 367 VMGRLVALIGAGGDRDRGKRPLMGQ----AATENADLVFVTDDNPRSEDPALIRAAVMGG 422

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         L    +L  GD +++  K 
Sbjct: 423 APEAIEVADRAEAILRAVDALGPGDALLIAGKG 455


>gi|114330911|ref|YP_747133.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307925|gb|ABI59168.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 617

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 159/387 (41%), Gaps = 18/387 (4%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A     +        + I ITGS GKTTTK++  + LS          S N      
Sbjct: 16  VASAYFNAWLHLLRLRHTSFIGITGSAGKTTTKDLCYLILSGFYPVAQSYKSLNVVKATA 75

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIAS 208
             +  +     F I E+  +  G +     LV+P IAV+T I   H   F    ++ IA 
Sbjct: 76  DFVLEVESKHRFSIIEMSGNRPGALDLPLWLVKPEIAVLTNIEKDHFRAFKGESVDGIAR 135

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            KA++ E L + GT  LN DD   +++  +  A     +   GKSK A  +L        
Sbjct: 136 EKAKLIEALSENGTAVLNMDDPRVKVIGERCKA----KVIWVGKSKGATLRLLNATSSYP 191

Query: 269 QS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           Q   + ++ +G + EV+    G ++A ++L  LG+       +D AI  L++  P EG  
Sbjct: 192 QPLTLTIKYEGITHEVITGLHGTYLATSVLCALGVALAAGIRLDQAIPRLALAVPVEG-- 249

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R +  +     T I +   A   S+   +  LS+ +     R+IAV+G + +       
Sbjct: 250 -RMQPVVMGDGVTFIRDDMKAPAWSLPMVLDFLSEATAV---RKIAVVGSISDFSGDRSD 305

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGD 445
            +   A  + L +   V   G +      A             T+     F+Q +L  GD
Sbjct: 306 KYKQFARQV-LQHADMVIFVGDNAHRALRARKDENDSALQGFLTLKEASSFLQKTLRPGD 364

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           +V++K SN      L  L+L+ +  IQ
Sbjct: 365 LVLLKGSN--KSDHLQRLILDRYKPIQ 389


>gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 135/390 (34%), Gaps = 42/390 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +DLL+      +G      +  I+ D+R +A    F  +KG  +DGH      ++KG
Sbjct: 1   MKLYDLLENNAETKLG---NIEITSITDDTRKVAEGCLFVCVKGGSFDGHTAAAEMLEKG 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VV   D+              D+       +  A       K  +I +TG+ GKTT 
Sbjct: 58  AAAVVCEHDLGLGDR-----QILTDNSRRLYGMMCSAWFGHPEKKLHMIGVTGTNGKTTI 112

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++   L         +G+  N IG  +                         ++ + E
Sbjct: 113 TNVIKHILMKNGHKTGLVGTIQNEIGDEIVHTENTTPMAYDLMALLDRMVKAGCEYVVME 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +     G ++          AV T +   HL     +E+   AK  +F+  +      +N
Sbjct: 173 VSSF--GLVQNRIGASWFDTAVFTNLTQDHLDYHKDMEDYYQAKKMLFDICD---CALVN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + L  +          SF     AD+     K  S  S       GKS  V   
Sbjct: 228 IDDEYGKRLYGEIGCEKQ----SFSVKGCADYTADGIKIKSTGSSFWFCKGGKSHLVKCR 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+   + +       VD  I A+  ++  +G   R         FT+I + Y
Sbjct: 284 MPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKG---RCEVIPTGRDFTVICD-Y 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
              P +++   ++L  +  + + R I + G
Sbjct: 340 AHTPDALE---NILRSVREYTDNRLICLFG 366


>gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
 gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
          Length = 483

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 154/450 (34%), Gaps = 41/450 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GIS DSR I P   F A+KG   DG +++  A+++GA ++V  TD      +  +PV 
Sbjct: 21  ITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIV--TDHNFVFENSLVPVV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145
            V +V  +L   A          ++A+TG+ GKT+    +      +    A IG+    
Sbjct: 79  RVLNVRHSLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWKYVGCCAASIGTVGVV 138

Query: 146 ----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         P+ L R+  +     V     E     L + R     VR   A  T
Sbjct: 139 SPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRI--DGVRLAAAAFT 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +   H+     IE+   AK  +F   L +     +  DD + + +         + + +
Sbjct: 197 NLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVR-RAHRQVLT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G++      L + +    +  +E ++           +G     N LM  G+     A 
Sbjct: 256 IGRTGKF-ITLNRVEHQRLKQCVECRMGNNIYTFDLPLVGDFQVANALMAAGLAIATRAS 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   ++L       G   R            +   Y   P +++    VL  + P  +G
Sbjct: 315 PDMVFRSLEKLQGAPG---RLELVGKTEDGAPVYVDYAHKPEALE---QVLLSVRPFTQG 368

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK------DALPRSIH 423
           R I V G   +  +  ++    +A          V ++  +           D L     
Sbjct: 369 RLILVFGCGGDRDQGKRALMGTIA----GNKADIVIVTDDNPRTEAPEKIRKDILQAVPE 424

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +    L  GD ++V  K 
Sbjct: 425 AIEIADRAEAIYYAVRLLKTGDTLIVAGKG 454


>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
 gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
          Length = 498

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 100/482 (20%), Positives = 184/482 (38%), Gaps = 51/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +++  I+  +I       VN IS DSR I   + F AIKG   DGH++I   +++G
Sbjct: 1   MNILEVINNIKIKTIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     +I + ++ V    ++    + +A A         +A+TG+ GKT+   
Sbjct: 61  AALVIASRYEDYNIENCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSIST 120

Query: 125 MLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDV---------------DFGIFEL 167
           ++   L ++ ++ A IG+  +  +   P+       DV                   FE 
Sbjct: 121 LVHNMLRNLDESSAFIGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIKNLAFEA 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTI 223
               +   R   + V   +A+ T +   HL     ++  A  K+ +F  L     +    
Sbjct: 181 SSHAMALGRI--YNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNFSEAKYG 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGK 279
            LN DD ++ ++   S  L  + I    K + ADF     KQ  E    ++   +     
Sbjct: 239 VLNKDDDYYGIM---SKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPEG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + E   + IG  M  N+L  +  V +    V+  +  L       GR +     L  G  
Sbjct: 296 TFECTTNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRME----ILGDGLP 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I   +   P   K  +    +I    +G+R  +L  M    ++S+     + E++S  
Sbjct: 352 IDIISDFAHTPDGYKKLLEATREIR---KGKRTLLLTGMGGGRDISKG--PLIGEIISE- 405

Query: 400 NISHVWLS-----GFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVV-- 449
              +V ++        V  L  A+ + +     E +         +      GDVV++  
Sbjct: 406 -ADYVIITTDSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVILAS 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
          Length = 484

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 145/395 (36%), Gaps = 29/395 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V GIS DSR + P   FFA+ G   DG  +   A ++GA  +V      +++G   I
Sbjct: 19  DLEVTGISSDSRQVKPGVIFFALAGSKADGSAYAADAARRGAVAIVTAKG--STVGGHPI 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  VDD   AL   A         T++A+TG+ GKT+                A IG+ 
Sbjct: 77  PVLAVDDPRLALALGAARFFGNQPQTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTT 136

Query: 144 NN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L ++  +     V     E     L + R     V+    
Sbjct: 137 GVVAPGRNEYGSLTTPDPVALHQLLKELADAGVTHASMEASSHGLDQRRL--DGVKLAAG 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     +E+   AK  +F+ L   G    +  DD +       + A G++ 
Sbjct: 195 GFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAARAAGLE- 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  +   +L++ +    +   EV+  G   E+     G     N L++ G+    
Sbjct: 254 VLTVGRHGDF-LRLKRVEHERHRQRAEVEANGVLYEIDLPLAGDFQISNALVSAGLAIST 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A+ +L       GR        N     +    Y   P +++   +VL+ + P 
Sbjct: 313 GIPTAKALMSLEKLKGAPGRLDLVGTTANGAPVYV---DYAHKPDALE---NVLTSVRPF 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             GR + V G   +     +    ++A  L+   I
Sbjct: 367 TTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVI 401


>gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 252

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/250 (46%), Positives = 152/250 (60%), Gaps = 6/250 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLW    L  A  G  IG      + G SID+RS+ P + FFAI+G   DGHDF+  A+ 
Sbjct: 5   PLWIPSALEAATGGRLIGEP--RAIRGASIDTRSLEPGDLFFAIRGEARDGHDFVQAALD 62

Query: 63  KGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           KGAG  VV      D   +   L++P  G D VL A+ +L +AAR RS+A I+A+TGSVG
Sbjct: 63  KGAGAAVVAASRADDCAGAGPVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKE L   LS+   T+A + SYNNH GVPLTLARMP    FG+FE+GM+H  EI  L
Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEAAQFGVFEIGMNHGAEILPL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D++ FE L A 
Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNANFERLLAH 242

Query: 239 SHALGIKTIY 248
           + A     + 
Sbjct: 243 AQASKAGRVI 252


>gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
 gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
          Length = 495

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 146/407 (35%), Gaps = 32/407 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA--SIGSL 81
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         S+   
Sbjct: 19  DVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +I V G+   LGA+             T++ +TG+ GKT+T ++L  A   +    A  G
Sbjct: 79  AIAVHGLRARLGAMADRF-HGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 137

Query: 142 SYNNHIGVPLT---------------LARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +    +   L                L ++  D    +  E+    L + R     V   
Sbjct: 138 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHALDQGR--VDGVHYD 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T +   HL     +E    AKA +F   +      +N DD F   L         +
Sbjct: 196 VAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQ-AAVINVDDLFGLRLLHGLANGVRR 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S     +AD   +      +    ++ +      V    +G     N+L   G++  
Sbjct: 255 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLTVAGVLYA 314

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +      LS   P  GR  R      Q    ++   Y   P ++     VLS +S 
Sbjct: 315 LDYALSEIAAVLSTLRPIHGRMNRL---GGQDGQPVVVVDYAHTPDALG---QVLSSLSS 368

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           H  GR I V G   E     +S    +AE     N   V ++  +  
Sbjct: 369 HVCGRLICVFGCGGERDRGKRSQMAVIAE----SNADVVLVTDDNPR 411


>gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
 gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
          Length = 508

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 175/478 (36%), Gaps = 61/478 (12%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G  +DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKHVKGSL-----DLEISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + DM     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDMDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + + L         I +                        + L L+ M   +V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI 223
            E     L         V     V T I   HL     I+   +AK  +F  +    G  
Sbjct: 187 LESTSHGLDLKTARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFG 246

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N+DD ++   K       +K  +++  KS  ADF +    +  + +  E   +G    
Sbjct: 247 VINFDDPYYSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKIDSTRFEFYHKGVKYF 301

Query: 283 VVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                +G    +N++  L  +  IL +D+   +  L      +GR         Q F  +
Sbjct: 302 ANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL--GQNFSVI 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S    
Sbjct: 360 ID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQIADIYS---- 410

Query: 402 SHVWLS-----GFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVV 447
             + L      G + + +   + + I        + +            S    GD+V
Sbjct: 411 DLIVLCDEDPRGENSMYIIKDIAKGIVNKVVNQDLFFIPDRRLAIEKAISLARAGDLV 468


>gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii
           37]
 gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas ingrahamii 37]
          Length = 509

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 162/487 (33%), Gaps = 59/487 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL   I+       P   V+G+++DSR I     F A++G  +DG  FI  +++ 
Sbjct: 7   IMLLDDL---IKPWLSDYDPSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKM 63

Query: 64  GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSV 117
           GA  V+  T   +  G ++I    PVF V      L+ LA     R      +IA+TG+ 
Sbjct: 64  GACAVLSETKNRSEHGQVTIKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTN 123

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVD---------------VD 161
           GKTT   +L  +   + K  A +G+  N +   L +     +D                +
Sbjct: 124 GKTTIASLLADSFMLLGKQSAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCYQQQRAE 183

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+    L + R     V    A+ T +   HL     +E    AK  +FE      
Sbjct: 184 YTIMEVSSHGLDQGRVSA--VPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQ 241

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA------DFQLRKWKQCSEQSWMEVQ 275
              +N DD                   S+G +  A        ++      ++       
Sbjct: 242 R-IINADDPIGAQWLTD-----FPDAISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFH 295

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  V     G     N+   L  + +    ++             GR ++Y  A  
Sbjct: 296 SSWGKGVVSAPFYGDFNVSNLAAVLTQLLVENVSIEHVQTIFPKLSTVPGRMEQYYFAEK 355

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
              F +    Y   P +++  +  L +      GR I V G     G+        +A +
Sbjct: 356 NITFVV---DYAHTPDALEKVLLALQKHKSS--GRLICVFGC---GGDRDTGKRPQMANI 407

Query: 396 LSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              Y    V L   +         +  +     R   V           F+ +S    D+
Sbjct: 408 AESY-AQKVVLVDDNPRTENAQSIIEDILQGFARPDRVEVIHDRRQAVNFLLNSAQSDDI 466

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 467 VLLAGKG 473


>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
 gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
          Length = 493

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 159/449 (35%), Gaps = 41/449 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDD 90
           +DSR + P + F A +G + DG ++I  A+  GA +V  ++ D  A      I   GV  
Sbjct: 29  MDSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSGDGFAWRPEWQIANLGVPH 88

Query: 91  VL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +     L    +        +   +TG+ GKT+  + L  A   +    A IG+  N   
Sbjct: 89  LKQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGNGFW 148

Query: 149 VPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             L              TL             + +S  G  +          A+ T +  
Sbjct: 149 GRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTNLTR 208

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYSFGKS 253
            HL     +    ++KA++F          +N DD F   L A   A      +Y +G +
Sbjct: 209 DHLDYHGSMAAYGASKAKLFYWQSLQ-HAIINTDDEFGRELAAGLRADRPNLNVYGYGFN 267

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + AD ++ ++    +   +       S E+    +G   AQN+   +G++      +   
Sbjct: 268 EQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYSLPDV 327

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L+   P  GR        ++    L+   Y   P +++ A++ L +I P        
Sbjct: 328 LRVLAQIRPATGRMDCI----SRAGRPLVVVDYAHTPDALEKALATLREIKPQ-GASLWC 382

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYS 427
           V G     G         L    ++     V ++  +         + D LP        
Sbjct: 383 VFGC----GGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALV 438

Query: 428 ETMDGLFLFIQSSLV---DGDVVVV--KS 451
           E      + IQ+++      D+V++  K 
Sbjct: 439 E--ADRRVAIQTAIRRAAPQDIVLIAGKG 465


>gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
 gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
          Length = 508

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 96/483 (19%), Positives = 179/483 (37%), Gaps = 63/483 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ I+G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKHIKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + DM     +  +    VD  ++   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDMDFYSPN--VTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSY------------------NNHIGVPLTLARMPVD-VDFGI 164
             + + L         I +                        + L L+ M  + V + I
Sbjct: 127 YYIYLLLKKKGIKVGFISTVFLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   +AK  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N+DD ++   K       +K  +++  KS  ADF +    +  + +  E   +G   
Sbjct: 246 GVINFDDPYYADFKN-----AVKKSFTYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL +D+   +  L      +GR         Q F  
Sbjct: 301 SANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + L          +  +KD          +  + +            S    GD+VV
Sbjct: 411 -DLIILCDEDPRGENGMCIIKDIAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVV 469

Query: 449 VKS 451
           V  
Sbjct: 470 VLG 472


>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
 gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
          Length = 477

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 131/389 (33%), Gaps = 40/389 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              ++L++ +   S+   P   + GI+ D+R  +     F  IKG  +DGHD     + K
Sbjct: 1   MKLYELIKDVAETSL---PDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDAAQQMLDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           G   VV   D+             V D   A   L  A       +  +I +TG+ GKTT
Sbjct: 58  GCAAVVCERDLGLER------QIIVTDTRAAFPMLCSAWFGHPERELELIGVTGTNGKTT 111

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------L 167
              ++   LS        IG+  N IG  +          + +FE              +
Sbjct: 112 ITTVIKKVLSGFGFKVGLIGTCQNEIGDKIIPTARTTPEPYDLFELFRKMADEGCKYTVM 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +           + T +   HL     +E    AK  +F+  +   T  +N 
Sbjct: 172 EVSSQGLEQKRVQGCHFKAGIFTNLTQDHLDVHGTMENYYQAKKMLFDICD---TAIINT 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +      +          ++  +  ADF+       +               V  + 
Sbjct: 229 DDEYGRRYVTEIPC----PYKTYSVNGKADFRAEDVMLGTTGVKYVFCDGKVKKNVSFNM 284

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  + +L          +  F   +G   R         FT+I + Y 
Sbjct: 285 PGLFNVSNSLAVIACMEVLGFTP---CNTIKEFEKIQGVRGRAEIIPTGRDFTVICD-YA 340

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P ++   I+VLS I    +G+   + G
Sbjct: 341 HTPDAL---INVLSAIKEGSKGKVKCLFG 366


>gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 523

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 142/362 (39%), Gaps = 19/362 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            + K A   R      II ITGS GKT+ K +L   +       A   SYNN +G+  T+
Sbjct: 165 YMQKAAKKLRDHENLCIIGITGSYGKTSVKNVLYQLMKEDWYALATPQSYNNRMGITKTI 224

Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    +  + E+G  H+ EI  L   VRP   ++T +   HL+ F  +E I   K +
Sbjct: 225 LEYLQPLHELFLCEMGADHVHEIEELMKFVRPQYGIVTAVGQQHLATFHSMENILHEKMQ 284

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E L + G  FLN D+ +      + H      +  FGK   AD++        E S  
Sbjct: 285 MIEQLGREGIGFLNADNEWIRSYPLRVHC----RVIWFGKDMLADYRYGNVSYDEEGSRF 340

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +  +  +       +G H   N+   + +   L    D   K          R ++ + 
Sbjct: 341 TITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQLPYVTHRLEKKQM 400

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A     +TL+D++YNANP   + A+ VL ++       RI +   + ++G      +  L
Sbjct: 401 A----DYTLLDDAYNANPKGARYALDVLREMPQQ----RIIITPGLIDLGYAQDKENELL 452

Query: 393 AEVLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVV 447
              ++   +  V L G      +K  L         +H    +   F  +Q        V
Sbjct: 453 GAYMAAC-VDDVILVGPTQTEKIKKGLIAKKFPIERLHVVTNIQEAFACLQQIKEKDAYV 511

Query: 448 VV 449
           ++
Sbjct: 512 LL 513


>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
          Length = 489

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 169/479 (35%), Gaps = 56/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL   +   IG      +  +  DSR +     F  + G  ++ HDFI   ++KG
Sbjct: 1   MKLEKLLNGFEYEIIG-NKDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  +V++ D+    G        V D   AL  L+ A       +  ++ ITG+ GKT++
Sbjct: 60  AHAIVISQDVSLKEGMT---YIRVKDTRIALALLSCAYFNYPSKELKVVGITGTKGKTSS 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMP-----VDVDFGIFE 166
             M+   L    K    IG+    I                L R+       D ++ + E
Sbjct: 117 SLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKMVEHDCEYCVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   R     +     V T I+P H+         E  + K  +F+  +      
Sbjct: 177 VSSQALKMNR--VAGIEFDYGVFTNISPDHIGPNEHKDFAEYMACKKHLFDFCQ---VGL 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--- 281
            N DD  FE             + ++   K++D +    +  +E   + +    K +   
Sbjct: 232 FNKDDEHFEEFTKDVPC----KVLTYSIEKDSDLKALHIELYNENGELGITFDTKGLINA 287

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G   A N L+ + I  ++          L   H   GRG+    +    +  L
Sbjct: 288 SFKASMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVH-VLGRGQVMHVSP--DYSVL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y  N  S ++ IS + Q +P+   + I V G     G+ S++   +  EV++ +  
Sbjct: 345 ID--YAHNGVSFESIISTVEQYNPN---KLIVVYGS---GGKRSKTRRYESGEVVAKHGG 396

Query: 402 SHVWLS----GFHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
             +  +    G  ++ +   +   I  ++ E                    GDVV++  
Sbjct: 397 YSILTADNPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLG 455


>gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
          Length = 495

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 158/460 (34%), Gaps = 41/460 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +    A   
Sbjct: 18  GRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTDAAGAALAR 77

Query: 80  SLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                    +   +D    L   A     R  AT++A+TG+ GKT+         +++  
Sbjct: 78  EALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFTRQIWAALGH 137

Query: 136 TYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTH 180
               IG+            +    P+TL R+  +     V     E     L E R L  
Sbjct: 138 AAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSHGL-EQRRL-D 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V    A  T     HL      E   +AKA +F   L   GT  +N DD     + A +
Sbjct: 196 GVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPRGPEIAALA 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A   + I + G   +AD +L   +  +    +    QG+        IG   A N+ + 
Sbjct: 256 RARAQRVIGT-GFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQAWNVAVA 314

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +        +      S      G   R + A  +     +   Y   P ++  A+  
Sbjct: 315 ASLAIGAGDAPERVFATFSRLQGVRG---RMQLAATRKNGASVFVDYAHTPDALATALKA 371

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
           L    PH  GR + V G     G+  +     +    +  +   ++++          A+
Sbjct: 372 LR---PHVMGRIVVVFGA---GGDRDRGKRPLMGRAAAD-HADVLYVTDDNPRTEDPAAI 424

Query: 415 KDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + A+  +    H         L    +L  GD +++  K 
Sbjct: 425 RRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 495

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 156/462 (33%), Gaps = 45/462 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +    A   
Sbjct: 18  GRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTDAAGAALAR 77

Query: 80  SLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                    +   +D    L   A     R  AT++A+TG+ GKT+         +++  
Sbjct: 78  EALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFTRQIWAALGH 137

Query: 136 TYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTH 180
               IG+            +    P+TL R+  +     V     E     L E R L  
Sbjct: 138 AAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAMEASSHGL-EQRRL-D 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V    A  T     HL      E   +AKA +F   L   GT  +N DD     + A +
Sbjct: 196 GVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPRGPEIAALA 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A   + I + G   +AD +L   +  +    +    QG+        IG   A N+ + 
Sbjct: 256 RARAQRVIGT-GFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQAWNVAVA 314

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +        +      S      G   R + A  +     +   Y   P ++  A+  
Sbjct: 315 ASLAIGAGDAPERVFATFSRLQGVRG---RMQLAATRKNGASVFVDYAHTPDALATALKA 371

Query: 360 LSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           L    PH  GR + V G   +           + + H D+  V      +          
Sbjct: 372 LR---PHVMGRIVVVFGAGGDRDRGKRPLMGRAAAEHADVLYVTDDNPRTE------DPA 422

Query: 413 ALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
 gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
          Length = 492

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/472 (18%), Positives = 176/472 (37%), Gaps = 47/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +L++AI   ++ +        + GI+  S  + P   F   KG  +D H+     +
Sbjct: 1   MLVRNLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEII 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           +KGA  +VV   +     S+  P   V D   A + L+         K   I ITG+ GK
Sbjct: 61  KKGASFLVVEHPI-----SVDFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI------------GVPLTLARMPVDV-----DF 162
           TT   +    L ++    + +G+    I               + + +   +        
Sbjct: 116 TTAAHLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDRSGKH 175

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L   R     V+  IA +T I   HL      +E    K  IF+ L++ G 
Sbjct: 176 FVMEVSSHSLAMKR--VESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEFGI 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             ++  D F  ++  +     +K +  +G S+N+D+++   +     +   ++ +    +
Sbjct: 234 AVVS--DEFEHIVNKR-----VKKVI-YGMSENSDYRILSAEIDKFGTNFVLKSRFGEHK 285

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H A N  + +  +  L  D+++ I+A+  F   EGR +  R     G   ++
Sbjct: 286 CSINIPGIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIVV 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNI 401
           D  +  +P +++  +    +I+    GR I V G   +  +  +    ++      +  I
Sbjct: 346 D--FAHSPDALEKTLITARKIAS---GRIITVFGAGGQADKGKRPMMAEVVCRYSDVSII 400

Query: 402 SHVWLSGFHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +     G     +    +  +P                   +    GD+V+V
Sbjct: 401 TTDDPRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRGDMVIV 452


>gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           succinogenes 130Z]
          Length = 488

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 168/475 (35%), Gaps = 48/475 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+ G +   +       + +DSRS+     F AIKG + DG  FI  A+++ A  V+ 
Sbjct: 4   LTALLGLNSPELDGIRFTEMCLDSRSVKTGCLFVAIKGHNVDGRRFIPVAIERHAAAVLA 63

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             D  +    +    +IPV    ++   L+++          +  +  +TG+ GKTT  +
Sbjct: 64  ECDNESEHLQVRFERNIPVISYFNLPEHLSEIADKFYDGPSQRLILTGVTGTNGKTTVSQ 123

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLAR-MPVDVDFGIFELG 168
           +L      +    A +G+  N                I V  +LAR +    DF   E+ 
Sbjct: 124 LLAQWARILGNIPAVMGTVGNGLLGQLQSAANTTGSAIEVQSSLARFIEQGADFAAIEVS 183

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G ++     ++    + T ++  HL     +   A AK  +F  L  +    +N D
Sbjct: 184 SH--GLVQKRIEALKFTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTALP-SKYQIINAD 240

Query: 229 DSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D      L+    A+ +     F   +    +        + + ++         +    
Sbjct: 241 DEVGRTWLQELPRAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKFASSWGDGVLASRL 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L+ L  +  L   + T I+ +S      GR +  +        T+I + Y 
Sbjct: 301 IGAFNVSNLLLVLATLLCLGYPLQTLIRTVSQLRGVCGRMEMLKAVHKP---TVIVD-YA 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++ A+        H  G+   + G   E     +     +AE L+      V ++
Sbjct: 357 HTPDALEKALQAART---HCRGKLWCIFGCGGERDNGKRPMMAQIAESLA----DRVIVT 409

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +     R  +V      +        S  + DV+++  K 
Sbjct: 410 DDNPRTEDPEKIVADITAGFARLKNVQIIHAREAAICAAIQSAAENDVILIAGKG 464


>gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M23]
 gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23]
 gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 491

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 146/407 (35%), Gaps = 32/407 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA--SIGSL 81
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         S+   
Sbjct: 15  DVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 74

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +I V G+   LGA+             T++ +TG+ GKT+T ++L  A   +    A  G
Sbjct: 75  AIAVHGLRARLGAMADRF-HGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 133

Query: 142 SYNNHIGVPLT---------------LARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +    +   L                L ++  D    +  E+    L + R     V   
Sbjct: 134 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHALDQGR--VDGVHYD 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T +   HL     +E    AKA +F   +      +N DD F   L         +
Sbjct: 192 VAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQ-AAVINVDDLFGLRLLHGLANGVRR 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S     +AD   +      +    ++ +      V    +G     N+L   G++  
Sbjct: 251 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLTVAGVLYA 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +      LS   P  GR  R      Q    ++   Y   P ++     VLS +S 
Sbjct: 311 LDYALSEIAAVLSTLRPIHGRMNRL---GGQDGQPVVVVDYAHTPDALG---QVLSSLSS 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           H  GR I V G   E     +S    +AE     N   V ++  +  
Sbjct: 365 HVCGRLICVFGCGGERDRGKRSQMAVIAE----SNADVVLVTDDNPR 407


>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
 gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
          Length = 506

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 176/488 (36%), Gaps = 55/488 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL  I        P+G    V GI  +S +  P + F  + G   DG +F   A+
Sbjct: 1   MKLRELLAKIANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFWESAI 60

Query: 62  QKGAGLVVVNTDMVASIG------SLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAI 113
             GA   +++    A            + V   DD   + A    A       K  +I +
Sbjct: 61  ASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFYDYPAQKLRLIGV 120

Query: 114 TGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMP-------------- 157
           TG+ GKTTT  ++   L+        A +G+           A                 
Sbjct: 121 TGTNGKTTTTHLIEFLLAHSSSPIPTALLGTLYARWPGFEQTASYTTPFAVQLQQQLQLA 180

Query: 158 --VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E+    L + R         +AV T +   HL     +++  SAKA++F 
Sbjct: 181 VKAGAQMAVMEVSSHALAQGRI--QGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKAKLFS 238

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEV 274
                G   +N DDS+ E L  +   L  + ++S+  ++ +ADF  +            +
Sbjct: 239 SDYLKGRAIINADDSYGERLIQQ---LPTEQVWSYSIQNPSADFWTKDLSYEPTGVRGIM 295

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +      +G +   N+L  +G V  L  D++    AL+ F    GR +R +   
Sbjct: 296 HTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQP 355

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q    ++D  Y   P S++   ++L    P  EG+ I V G     G+  ++    + +
Sbjct: 356 EQDISVIVD--YAHTPDSLE---NLLRASRPFIEGKMICVFGC---GGDRDRTKRPKMGK 407

Query: 395 VLSLYNISHVWLSG--------FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGD 445
           + +      V  S           +  + + +P+S+  +   +    +   I  +   GD
Sbjct: 408 IAAQLADVAVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQA-KPGD 466

Query: 446 VVVV--KS 451
            V++  K 
Sbjct: 467 GVLIAGKG 474


>gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
 gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
          Length = 496

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/470 (18%), Positives = 165/470 (35%), Gaps = 60/470 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--- 81
             +  +++DSR +   + F A+KG   DG  FI +A+++GA +++   D       L   
Sbjct: 19  TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPK 78

Query: 82  ----------SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIA 129
                        V  V  +   L+++A         K T+  ITG+ GKTTT ++L   
Sbjct: 79  FAKFNLDRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 130 LSSIKKTYACIGSYNNH---------------IGVPLTLAR-MPVDVDFGIFELGMSHLG 173
            + +    A +G+  N                I +   LA  + +  DF   E+    L 
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLA 198

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +  F    +   +A+ T ++  HL   + +EE A AK  +F  L  T    +N DD    
Sbjct: 199 Q--FRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELS-TKAQVINADDEIGR 255

Query: 234 LLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               +  +A+ + T   F  +     +    K   + + +  +    + E+    IG   
Sbjct: 256 EWLTQLPNAVAVSTDPKFAGNHQF-VKATAVKFTLQGASIAFESSWGNGELHSRLIGAFN 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L     +  L  D+   +K         G   R  C        +I + Y   P +
Sbjct: 315 VNNLLTAFAGLLALGFDIQELVKTAPNLVGVAG---RMECITAPNKPMVIVD-YAHTPDA 370

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-- 410
           ++ A+        H EG    + G   +     +     +AE L+      V  +  +  
Sbjct: 371 LEKALQA---ARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLT----DKVIATDDNPR 423

Query: 411 -------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  +     +   + +    +             DV+++  K 
Sbjct: 424 TEDNQKIMADIVKGFSKPQQIIH--NREEAIKTAIEQAKATDVILIAGKG 471


>gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
 gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
          Length = 483

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/464 (20%), Positives = 166/464 (35%), Gaps = 47/464 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P     G++ DSR +AP   F A+ G   DG DFI  A+  GA  V+ +     
Sbjct: 5   QIFDNAPDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGAIAVLTDE---- 60

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             G   IP   V +   A  K A A   +    ++A+TG+ GK++T + L    + +   
Sbjct: 61  RDGEWEIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHV 120

Query: 137 YACIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTH 180
            A +G+                 + + V  TLA +  + V     E     L + R   H
Sbjct: 121 SASVGTLGAVGPSGAVELGHTTPDPVAVQSTLAILANEGVTHCAMEASSHGLAQYRM--H 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKS 239
            V+        ++  HL      E+  +AK ++F  L   G    +N D    +   A +
Sbjct: 179 GVQLAAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQN 295
            A  +K  ++ G   +    + +    +    +++Q +     K   V    IG   A N
Sbjct: 239 TAANLKP-FTVGWRGD-HLWIDEISPRNTGQKLQLQWETPEGDKETIVNLPLIGEFQALN 296

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L   GI   L AD      A+      +GR +      N      I   +   P  +  
Sbjct: 297 ALAAAGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQNGAG---IFVDFAHTPDGLD- 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
             ++L    PH  GR I V G     G+        + E+ + Y    V ++  +  +  
Sbjct: 353 --TLLRAARPHAAGRVICVFGC---GGDRDAGKRPIMGEIAAKY-ADEVIVTDDNPRSED 406

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +  + +    +  +       S L  GDV+++  K 
Sbjct: 407 PASIRAAIMAGAPNATEIDGREAAIKEGISRLKKGDVLMIAGKG 450


>gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate
           [Corynebacterium glutamicum]
          Length = 293

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 28/288 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++   + G   G   +  +  + +  DSRS+ P   F A+ G   DGHDF   A++
Sbjct: 4   MTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVAARL-- 104
           KGA  V+   +    + ++ +P   + +                V+ AL++LA       
Sbjct: 64  KGAVAVLAARE--VDVPAIVVPPVKIQESNADIYAHEPDGHGAAVVEALSRLARHVVDIC 121

Query: 105 --RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
               +  ++AITGS GKT+TK+ +   L     T A  GS+NN +G+P T+ R   D  +
Sbjct: 122 VAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTV-RCTTDTKY 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--- 219
            + E+    +G I+ LT +  P IA +  +  AHL  F   E IA AK EI E L     
Sbjct: 181 LVAEMSARGIGHIKHLTEIRPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKT 240

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            G   LN DD F   +  ++ A  +      G++K +D+        +
Sbjct: 241 GGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYWATSISLDA 288


>gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M12]
 gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Xylella fastidiosa M12]
          Length = 491

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 32/407 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA--SIGSL 81
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++         S+   
Sbjct: 15  DVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 74

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +I V G+   LGA+             T++ +TG+ GKT+T ++L  A   +    A  G
Sbjct: 75  AIAVHGLRARLGAMADRF-HGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 133

Query: 142 SYNNHIGVPLT---------------LARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPH 185
           +    +   L                L ++  D    +  E+    L + R     V   
Sbjct: 134 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHALDQGR--VDGVHYD 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T +   HL     +E   +AKA +F   +      +N DD F   L         +
Sbjct: 192 VAVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQ-AAVINVDDLFGLRLLHGLAKGVRR 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S     +AD   +      +    ++ +      V    +G     N+L   G++  
Sbjct: 251 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLAVAGVLYA 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +      LS   P  GR  R      Q    ++   Y   P ++     VLS +S 
Sbjct: 311 LDYALSEIAAVLSTLRPIHGRMNRL---GGQDGQPVVVVDYAHTPDALG---QVLSSLSS 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           H  GR I V G   E     +S    +AE     N   V ++  +  
Sbjct: 365 HVCGRLICVFGCGGERDRGKRSQMAVIAE----SNADVVLVTDDNPR 407


>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
 gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 487

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 156/456 (34%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PGLRCRVINLDDDFGRRLAGEEQ---DSEL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+ +         +        +    +G     N+L  +G +  L
Sbjct: 251 ITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   ++ L       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 311 GYPLGDILRTLPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
              R + + G   +     +     +AE L+      V ++  +         +  ++  
Sbjct: 364 AAARLLCLFGCGGDRDAGKRPLMAAIAERLA----DEVLVTDDNPRTEASAAIIADIRKG 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V +  +       + +S    DVV++  K 
Sbjct: 420 FAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
 gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
          Length = 485

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 165/452 (36%), Gaps = 50/452 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +        + +  
Sbjct: 22  DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHKVSYVLIDE 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNH 146
           +   LG +         + K  II +TG+ GKT++  M+   +     T    IG+    
Sbjct: 82  IRHKLGYIASNFYEW-PQRKLKIIGVTGTNGKTSSTYMIEKLM---GDTPITRIGTIEYK 137

Query: 147 IGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           IG  +  A                 +   +++ + E+  SH  EI     ++    A+ T
Sbjct: 138 IGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VDVLDFDYALFT 195

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E    AK ++F  L+       N DD + + L  +        I S+
Sbjct: 196 NLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKYGKRLYDE-FIEDNPEIISY 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G     D +        +  +++++ +GK  +V    +G     N L  + I   +    
Sbjct: 255 GID-GGDLEGEYL----DDGYIDIKFKGKVEKVKFALLGDFNLYNTLGAVAIAIKMGISW 309

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I      R
Sbjct: 310 EDILKRVSNIKAAPGRFEALNC--GQDYKVIVD--YAHTPDALVNVIVAARNIR--NGNR 363

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421
            I + G   +     +      AE LS      V L+  +            +K    ++
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAEDLS----DIVILTSDNPRTESPEQIFADVKIGFTKN 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +    +       +     D++++  K 
Sbjct: 420 DDYFFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 494

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 171/482 (35%), Gaps = 47/482 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T   LL      S  +     +  + +DSR I     F AIKG   DG  FI  A
Sbjct: 1   MSKELTLTHLLAPWVSLSHQVCNDVAIQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +Q+GA  ++         G +     + V  + D+   L++LA   +  S   +IA+TG+
Sbjct: 61  IQQGANAIIAEAGEQNVHGKVEQLGSVSVVYIADLSQKLSQLASRLQPLSYNQLIAVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDF 162
            GKTT  +++   L    +  A +G+  N     LT                    D   
Sbjct: 121 NGKTTITQLIAQWLELSGQRAAVLGTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGA 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     +   + V + ++  HL     +EE A AK  +F  +     
Sbjct: 181 QYTAMEISSHGLVQNRVKALSFSVGVFSNLSRDHLDYHGTMEEYARAKLSLFT-VHDCAK 239

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+               ++      K       + +       +    Q     
Sbjct: 240 AVINIDDTVGASWVELLDNCIPVSLSPIQTGKG--VFATQVQYSEAGITLSFSGQYGEGR 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+++    +  L  D    +++ S   P  G   R      QG   ++
Sbjct: 298 FTVPLIGEFNASNVMVAFATLLSLGIDKQILVESASQLKPVLG---RMELFHAQGKAKVV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+  L     H  GR  A+ G   +     +     + E L+     
Sbjct: 355 VD-YAHTPDALEKALLALK---VHCNGRLWAIFGCGGDRDTGKRPMMASIGEKLA----D 406

Query: 403 HVWLSGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            V L+  +  +      +KD L     P +  V + +  + L   ++ S    D++++  
Sbjct: 407 VVILTDDNPRSESPSAIVKDMLAGMASPENAIVEH-DRYNALVHALKHS-SGDDIILIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
 gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
          Length = 508

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 178/483 (36%), Gaps = 63/483 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ I+G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKHIKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + DM     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDMDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSY------------------NNHIGVPLTLARMPVD-VDFGI 164
             + + L         I +                        + L L+ M  + V + I
Sbjct: 127 YYIYLLLKKKGIKVGFISTVFLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   +AK  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N+DD ++   K       +K  +++  KS  ADF +    +  + +  E   +G   
Sbjct: 246 GVINFDDPYYSDFKN-----AVKKSFTYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL +D+   +  L      +GR         Q F  
Sbjct: 301 SANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A+  S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQIADNYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + L          +  +KD          +  + +            S    GD+VV
Sbjct: 411 -DLIILCDEDPRGENGMCIIKDIAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVV 469

Query: 449 VKS 451
           V  
Sbjct: 470 VLG 472


>gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
 gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
          Length = 487

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 172/473 (36%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +    +       +  I+ DSR +   + F AIKG   DGHD+I  AV +GA 
Sbjct: 4   LKDILYKVTLDKVLGNTAVAIRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            ++   + + S     I    V+D   AL  +         ++  ++ +TG+ GKTT   
Sbjct: 64  AIIC--ETIPSEIINGITYIQVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIAT 121

Query: 125 MLTIALSSIKKTYACIGSY-----------NNHIGVPLTL---ARMPVDVDFGIFELGMS 170
           +L     +       + +             +     LT+    R  VD       + +S
Sbjct: 122 LLYNLFMAAGYETGLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVDAGVSYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL      +E    K + F+ L KT    +N DD 
Sbjct: 182 SHGIHQKRTEGLTFAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQLSKTAFALVNADDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD + +  +   +   + ++L G+ +      IG 
Sbjct: 242 NGMVMLQNTSAKKV----TYALKSMADHKAQILENQLQG--LLLKLDGQEL--WVKLIGN 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L       +L  +    ++ +S     +GR + +    N     ++D  Y   P
Sbjct: 294 FNAYNVLAIYATAELLGLETIETLQLISTLESVDGRFQYF--ISNTKVTAVVD--YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E + I V+G     G+   +    + ++ +  +   ++ S   
Sbjct: 350 DALKNVLETINTIRTGNE-QLITVVGC---GGDRDVTKRPIMGKIAAQLSTKAIFTSDNP 405

Query: 409 --FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                 A+ + +   +     +                    + D++++  K 
Sbjct: 406 RTEQPEAIIEQIEAGVEPIDFKKTLSITDRKQAIKTACQLANENDIILIAGKG 458


>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
          Length = 515

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/487 (19%), Positives = 162/487 (33%), Gaps = 55/487 (11%)

Query: 7   FHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            HDLL+ +    H     P   +  I  DSR++ P   F A +G H DGH +I  A+++G
Sbjct: 5   LHDLLRTLCDPAHLPRANPA--ITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  VV   +  A  G + +P     +     A    A       +  ++ ITG+ GKTTT
Sbjct: 63  AAAVVY--EDPAWDGRIPVPALRTPNARAALAPLAAAFYGYPGRQMRVVGITGTDGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDF--GI 164
             + ++AL +       +G+ +  I   L                 L R  V       +
Sbjct: 121 TFLTSVALEAGGAVTGLMGTVDFKIAGRLWANDSRQSTPEAPEVQALLRDMVHAGCAYAV 180

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------- 217
            E     L             IAV+T +   HL     +E+    KA +FE L       
Sbjct: 181 VEATSHALSARWNRLAGCAFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFHDDA 240

Query: 218 ---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              ++     +N DD    +    +     +   ++    NAD   R  +   +     V
Sbjct: 241 TPFKQRKIAIVNADDPNHRMFLDAAPPYAER--LTYAIHANADVCARNVRSTRDGLMFRV 298

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                + +      G     N L  L +       +   + AL       GR +R     
Sbjct: 299 TTPWGAADAHLRLTGDFNVWNALAALTVACAEGVPLSVCLAALERVPGVRGRMERIEM-- 356

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA- 393
            Q F  L+D  Y   P + +  + +   + P  +G+ I V G   E     +    ++A 
Sbjct: 357 GQPFTVLVD--YAHTPGAFEKLMRI---VRPLTDGQLIVVFGSAGERDRAKRPLQGEIAG 411

Query: 394 ---EVLSLYNIS------HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              +++ L +           ++   V                           +    G
Sbjct: 412 RFCDLVVLTDEDPRLEDREAIIAEIAVGVEAAGKRIGETCLCIPDRAHAIRTAFARARPG 471

Query: 445 DVVVVKS 451
           D+V++  
Sbjct: 472 DIVLLLG 478


>gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
 gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
          Length = 493

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 146/410 (35%), Gaps = 36/410 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79
              ++ + +DSR I     F AIKG   DG  FI  A+ +GA  V+  +      G    
Sbjct: 24  DMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIAQSCERHPQGVCST 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ LA          ++ +TG+ GKTT  +++   L+ + K  A 
Sbjct: 84  ESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQIIAQWLNLVGKRAAV 143

Query: 140 IG---------------SYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
           +G               +  + I +  TL  +     DF   E+    L + R     + 
Sbjct: 144 LGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSHGLVQGR--VKTLP 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE   AK  +F    + G   +N DD        +     
Sbjct: 202 FAAGVFTNLSRDHLDYHGTMEEYELAKRSLFTE-HQCGKAIINVDDQVGAKWAEQLPDAI 260

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++     +        +         +    +    +     IG   A N+L+    +
Sbjct: 261 QVSLQPLSSTNA--VFASQVDYSESGISLAFSGRFGDGQFSVPLIGEFNANNVLVAFTTL 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    I+      P  G   R     N+G   ++ + Y   P +++ A+  L   
Sbjct: 319 LALGIDKQQLIETAKQLTPVIG---RMELFHNEGKAKVVVD-YAHTPDALEKALMALR-- 372

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             H  G+  A+ G   +     +    ++ E L+     HV L+  +  +
Sbjct: 373 -VHCHGKLWAIFGCGGDRDTGKRPMMAEIGERLA----DHVVLADDNPRS 417


>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
 gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
          Length = 454

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 166/447 (37%), Gaps = 57/447 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR + P + F AI     DGHD+I  A+  GA  ++         G+ S+    V++ 
Sbjct: 7   TDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIA------EHGNYSVETVIVENT 60

Query: 92  LGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNH 146
              LN+        L     +I +TG+ GKTTT  M+   LS +K+  A    +G Y  +
Sbjct: 61  RKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGFYYGN 120

Query: 147 IGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           I   +      VDV             ++ + E+    L + R   + +       T + 
Sbjct: 121 IKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRI--YGLEFDEVAFTNLT 178

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E  A+AK ++FE         +N DD   +    + +   +         
Sbjct: 179 QDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDDIHHQHFMLEGNNNIVI-------- 230

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            + D ++         +  + +    S  V  + +G +   N L  L +V+ L   ++  
Sbjct: 231 -DRDVKIENVDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTALLLVNKLGFKIEDI 289

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +          GR +  +   N      I   Y   P +++   +VL       +G+ I 
Sbjct: 290 LLLNEKLKAPAGRMELIKYNTNS-----IFVDYAHTPDAVE---NVLKSAQEFKKGKIIT 341

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHY- 426
           ++G     G    +    + + +++ N  +V  +  +         L D     I  ++ 
Sbjct: 342 IIGC---GGNRDATKRPIMGK-IAVDNSDYVIFTSDNPRKEEPEAILNDITANLISDNFE 397

Query: 427 --SETMDGLFLFIQSSLVDGDVVVVKS 451
              E  D ++  ++  L + D++++  
Sbjct: 398 IIVERQDAIYKGVK-MLDENDILMILG 423


>gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 495

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 158/460 (34%), Gaps = 41/460 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +    A   
Sbjct: 18  GRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTDAAGAALAR 77

Query: 80  SLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                    +   +D    L   A     R  AT++A+TG+ GKT+         +++  
Sbjct: 78  EALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFTRQIWAALGH 137

Query: 136 TYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTH 180
               IG+            +    P+TL R+  +     V     E     L E R L  
Sbjct: 138 AAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSHGL-EQRRL-D 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V    A  T     HL      E   +AKA +F   L   GT  +N DD     + A +
Sbjct: 196 GVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPRGPEIAALA 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A   + I + G   +AD +L   +  +    +    QG+        IG   A N+ + 
Sbjct: 256 RARAQRVIGT-GFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQAWNVAVA 314

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +        +      S      G   R + A  +     +   Y   P ++  A+  
Sbjct: 315 ASLAIGAGDAPERVFATFSRLQGVRG---RMQLAATRKNGASVFVDYAHTPDALATALKA 371

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
           L    PH  GR + V G     G+  +     +    +  +   ++++          A+
Sbjct: 372 LR---PHVMGRIVVVFGA---GGDRDRGKRPLMGRAAAD-HADVLYVTDDNPRTEDPAAI 424

Query: 415 KDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + A+  +    H         L    +L  GD +++  K 
Sbjct: 425 RRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella bacilliformis KC583]
 gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella
           bacilliformis KC583]
          Length = 483

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 158/463 (34%), Gaps = 41/463 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +      +    + GIS +SR I P   F A++G   DG  +I  A+++GA +VV  TD
Sbjct: 8   TECVDDNNLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVV--TD 65

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                 +LS+PV  V DV   L   A         T++A+TG+ GKT+    +      +
Sbjct: 66  FDFVAENLSVPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHV 125

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRF 177
               A IG+                  P+ L R+        V     E     L + R 
Sbjct: 126 GFCAASIGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRL 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLK 236
               V    A  T +   H+   + +++   AK  +F+  L       +  DD + + + 
Sbjct: 186 --DGVNLAAAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVI 243

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                 G +   + G+      ++ + +    + ++E +++          +G+    N 
Sbjct: 244 NHVTQAG-RRALTIGRKGQF-IKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           LM  G+     +  D    +L       G   R            +   Y   P +++  
Sbjct: 302 LMAAGLAITTGSSSDKVFSSLKKLKGAPG---RLELVSKTKDNASVYVDYAHKPEALE-- 356

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
             VL    P   GR I V G   +  +  +     +A    +     V ++  +      
Sbjct: 357 -QVLLAARPFTPGRLIVVFGCGGDRDQGKRPLMGKIA----VDKADIVIVTDDNPRTEEP 411

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +D L  +              +    L  GD +++  K 
Sbjct: 412 EKIRQDILQAAPGALEIADRSEAIYYAVGLLEAGDTLIIAGKG 454


>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
 gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
          Length = 482

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 184/476 (38%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AIAILC--EDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLA----RMPVDVDFGIFEL 167
             +L             I +  N+I             P+TL     RM  +    +F  
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + ++ L +    + T +   HL     +E    AK + F+ L K      N 
Sbjct: 179 VSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNL 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    
Sbjct: 238 DDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y 
Sbjct: 290 IGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S
Sbjct: 346 HTPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 408 G-FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                   +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
 gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
          Length = 485

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 167/455 (36%), Gaps = 48/455 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEM---KYNV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACI 140
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T    I
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134

Query: 141 GS-YNNHIGVPLTLA------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                + +   +                +   +++ + E+    L   R    ++    A
Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR--VDVIDFDCA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +   +    I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDDYGKRLYDE-FIIDNPEI 251

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S+G     D +        +  +++++ + +  +V    +G     N L  +GI   + 
Sbjct: 252 ISYGID-GGDLEGEYL----DDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALNC--GQDYKVIVD--YAHTPDALVNVIVAARNIKNVN 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
             R I + G   +     +     + E LS      + L+  +            +K   
Sbjct: 363 --RIITIFGCGGDRDRTKRPIMAKVVEDLS----DIIILTSDNPRTENPEQIFTDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +S    +    +       +     D++++  K 
Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKG 451


>gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 518

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 181/496 (36%), Gaps = 67/496 (13%)

Query: 4   LWT-FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L+T F DL     G  I  V    ++GI+ +S+ + P + F A +G   D HD+I  A+ 
Sbjct: 24  LFTEFADL--GTTGTDIEGV---TISGITDNSKEVTPGKIFVACQGTKVDAHDYIEEAIA 78

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
            GA  V++   D +  +   +IP F V +    L KLA         +  +  ITG+ GK
Sbjct: 79  NGASTVILERADYIDKVKDSAIPYFKVRNGRKTLAKLASTFYDHPSHRLIVTGITGTNGK 138

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  ++   ++ +      IG+ N  I      +++                  +V + 
Sbjct: 139 TTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYSLIEKMVQKEVKYL 198

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L + R     +   IA IT I+  H+      ++   +K + F+ L      
Sbjct: 199 TKEVSSHGLKQDRVSA--INFDIAGITNISYDHMDFHDSWDDYFKSKTKFFQMLSPDSIS 256

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGK--- 279
            LN DD     +  K+ +     + ++G  S  A            ++    Q++ +   
Sbjct: 257 VLNADDPNAISMGDKTRS----KVITYGISSPGAMITAENVDLKPFETSFTYQIKEELPT 312

Query: 280 ---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                    S  +     G H   N L+ + +  +   D +  IK    F    G  +R 
Sbjct: 313 VTNKPVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQVIKTAEQF---PGLFRRL 369

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH- 389
                +  FT+ID+    NPAS+++    +SQ+  +   R + V       G+     + 
Sbjct: 370 EVIY-KNSFTIIDDC-AHNPASIRSVFETISQLPFN---RLVIVFAIRGSRGDQINLENS 424

Query: 390 IDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHVHYSETMDGLFL 435
             L + ++   +  + +              S      L           +   ++    
Sbjct: 425 QRLVKWVNHLPVRELIITTSKSHAAPTNQVHSSEQTAFLSPLKTSGTPFKFIHNLEETIE 484

Query: 436 FIQSSLVDGDVVVVKS 451
              + +  GD++++  
Sbjct: 485 TALNEVKQGDLLMILG 500


>gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA2]
 gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL044PA1]
 gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA3]
          Length = 499

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 151/467 (32%), Gaps = 50/467 (10%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
              + G  P   + GI++DSR + P + +  ++G H  G  F   A + GA  V+ +   
Sbjct: 6   GCRADGNGPA--ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDEHG 63

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                   +PV  VDD   A+   A           T+  ITG+ GKTTT  ++   L +
Sbjct: 64  AKLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFLVEAGLRT 123

Query: 133 IKKTYACIGSYNNHIGV-------------------PLTLARMPVDVDFGIFELGMSHLG 173
                  IG+    +                      L  A +       + E+    L 
Sbjct: 124 AGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALA 183

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             R         +   T +   HL     +++   AKA +F   +      +N DD    
Sbjct: 184 LQR--VDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTP-DLARVGVINVDDPRGR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  +  A G++ + +    + +D+Q+  W   +  +  +V        +     G    
Sbjct: 241 QLIERMQANGVRAVTT-SIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLPGEFNV 299

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N  M L ++       D     L       GR +R     +     +    +   P ++
Sbjct: 300 RNAAMALAMLETAGLAFDDVADGLCSAQ-VPGRMERVDLGADAPTALV---DFAHTPQAI 355

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
            +A+     ++    GR IAVLG     G+        + +V +      V ++  +   
Sbjct: 356 ASALDAARSLADS--GRLIAVLGA---GGDRDAVKRGPMGQVAAER-ADIVVITDDNPRT 409

Query: 413 ------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                          DA    I V                   GDV+
Sbjct: 410 EDPAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVI 456


>gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia canadensis str. McKiel]
 gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel]
          Length = 478

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 178/480 (37%), Gaps = 65/480 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+    L Q           Q  + G+S +S++I   E FFA+KG   DG+DFI  A+ K
Sbjct: 2   LFNLKQLFQ-----------QHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNK 50

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA LV+ + +   +I      V  V+D+  AL ++      +    +IA+TG+ GK++  
Sbjct: 51  GAVLVITDNEKNTAINK----VIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVI 106

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD--------------------VDFG 163
             +    S + +  A IG+    I           +                    +++ 
Sbjct: 107 SYIAQLYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYL 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT 222
            FE     L + R   + V  +IA  T+ +  HL      E    AK ++F   L     
Sbjct: 167 AFEASSHGLDQTRLGENKV--NIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAI 224

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN D    E +KA  +   IK I + G     D Q+ +     +   ++     +   
Sbjct: 225 SILNSDIEEIEFIKAYLNKHNIKFI-TVGI--KGDLQITRINSSLKGQNIDFTFNNRKYS 281

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+L+            D  I +L    P +GR ++          T I
Sbjct: 282 FNTPIIGSFQASNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQIE-------NTNI 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              Y+  P +++ A+  L  I     G ++  + G      +  +S    +A  L+    
Sbjct: 335 FVDYSHTPDALEKALLELKNIQVL--GSKLNVIFGCGGNRDKKKRSLMGQIAAKLA---- 388

Query: 402 SHVWLSGFHVL------ALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
            +V ++  +           + +      +Y   E  +    +  ++L   D++++  K 
Sbjct: 389 DNVIITDDNPRLEDPKLIRAEIISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKG 448


>gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chitinophaga pinensis DSM 2588]
 gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis
           DSM 2588]
          Length = 488

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 174/477 (36%), Gaps = 47/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +    +       VN +SIDSR++    AF AIKG H DGH FI  A+ +
Sbjct: 1   MKTLRDILYNVSIREVHGSTDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +++      +    L+  +         +           K  ++ +TG+ GKTT  
Sbjct: 61  GAAVIICEELPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGVTGTNGKTTIA 120

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFELG 168
            +L    S ++     + +  N                I +   LA M  +    +F   
Sbjct: 121 TLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHTTPDAIHLNALLADMVDEGCEYVFMEV 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH    + +  L +    + + I   HL      +E    K   F+GL  T     N D
Sbjct: 181 SSHAVHQQRIAGL-KFAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDGLPTTAFALTNLD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       S+     ADF+ +  +       M V       EV    I
Sbjct: 240 DKRGNVMLQNTRAKKQ----SYSLKTVADFKGKILENNLTGLIMTVN----EKEVHFRLI 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L  D D  ++ALS     EGR      A ++    +    Y  
Sbjct: 292 GEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGRFDYITSAKDRIIGIV---DYAH 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++   ++ +  +    E + I V+G     G+   +    +A   + ++   V L+ 
Sbjct: 349 TPDALLNVLATIKNLRKGNE-QVITVVGC---GGDRDTAKRPVMAAAATEHS-DKVILTS 403

Query: 408 ----GFHVLALKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +A+   +   I VH        ++  + +   I S     D++++  K 
Sbjct: 404 DNPRSEDPVAIIQQMEAGIPVHQKRKALSITDRKEAIKTAI-SLANPDDIILIAGKG 459


>gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 458

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 155/447 (34%), Gaps = 50/447 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  +SR++ P + F AI     DGHD+I  A+  GA  ++         GS  +    V+
Sbjct: 5   LKTNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIA------EHGSYKVETIIVE 58

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                L          L     +I +TG+ GKTTT  M    L  +KK  A +G+   + 
Sbjct: 59  STREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFYY 118

Query: 148 GV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           G                  + L      V++ + E+    L + R   H +       T 
Sbjct: 119 GDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRI--HGLEFDEVAFTN 176

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E  A+AK  +F          +N DD  ++    +S+   I      G
Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQHFVLESNNNII-----IG 231

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +  ++D ++ +       +  + +      +   + +G +   N L+ L +V+ L   ++
Sbjct: 232 QH-DSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIE 290

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +          GR +  +   N      I   Y   P    A I+VL        GR 
Sbjct: 291 DILALNDKLKAPAGRMELLKYGTNS-----IFVDYAHTPD---AVINVLKSAEEFKNGRI 342

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYS 427
           I ++G     G+   +    + +    ++   ++ S          + D +   +     
Sbjct: 343 ITIIGC---GGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNF 399

Query: 428 E---TMDGLFLFIQSSLVDGDVVVVKS 451
           E         +     L   D++++  
Sbjct: 400 EIEVDRQKAIIKGMQQLKHNDILMILG 426


>gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
 gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
          Length = 492

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 172/482 (35%), Gaps = 53/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL       +        N IS+DSR+I   + F A+ G   DG  FI  A ++G
Sbjct: 1   MRLSDLL----APWLHYSGPESFNNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL-----GALNKLAVAARL--RSKATIIAITGSV 117
           A   +V++D  A  G L +   G   VL       L+ +   A      +  +I +TG+ 
Sbjct: 57  AVAALVHSDDPAEHGRLKLEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLKLIGVTGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMP-----VDVD 161
           GKT+  +++   ++ + K  + +G+  N +             P+T++           D
Sbjct: 117 GKTSITQLMAQLVALLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGAD 176

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               E+     G I+     V   +AV T ++  HL     ++    AK  +F+      
Sbjct: 177 LCAMEVSSH--GLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKFTSLQS 234

Query: 222 TIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +  N DD       ++   A  I        +  A        Q  +     +      
Sbjct: 235 GLI-NLDDEVGRQWLSEEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQ 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++    +GY    N++  LG + ++  D+     ++       GR +R+         T
Sbjct: 294 AKLASPLLGYFNLSNLVAALGALYLIGYDMRAMAASVPQLKSVAGRMERFTT---DNGVT 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+ + Y   P +++ A+  L     H EG+   + G   +  +  +      AE  +   
Sbjct: 351 LVVD-YAHTPDAIEQALKALRG---HCEGQLWCLFGCGGDRDKGKRPLMAQAAEAYA--- 403

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +  +         +   L     V    + +     + +    GD++++  
Sbjct: 404 -DKVMVTSDNARSESPEVIIEEILAGLDAPERVLTQVSREKAIRQVVALAKPGDLILLAG 462

Query: 450 KS 451
           K 
Sbjct: 463 KG 464


>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 495

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/489 (17%), Positives = 161/489 (32%), Gaps = 65/489 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    I       + GI  DSR + P + F  + G   DGH F   A +KG
Sbjct: 1   MKLKQLSSVLAAAVIDGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHLFAAQAAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +VV   +      + +P   V D   A+  LA        ++  +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANTFFDQPSARMKMIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLAR-----------MPVDVDFGIFE 166
             ++   ++        IG+      N    +P T                   +  + E
Sbjct: 116 TYLIETIMNDHGLKTGLIGTIQMKYGNQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------E 218
           +    L + R          A+ T +   HL     +EE   AK   F  L        +
Sbjct: 176 VSSHALEQGR--VKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDEK 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 LN DD         + A     + ++G  ++AD +       ++ +   V    
Sbjct: 234 SRKYAVLNADDDASAYFAKITAA----EVITYGLGEDADVRASNISITAQGTSFHVDTFR 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S ++    +G     N +  +    +    ++      S      G   R         
Sbjct: 290 GSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIK---SSLESVPGVDGRVEVVDEGQP 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           + +I + Y   P  ++  +  +++ +   EGR + V G     G+  ++    + ++ + 
Sbjct: 347 YAVIVD-YAHTPDGLENVLRTVNEFA---EGRVLTVFGC---GGDRDRTKRPIMGKIAAK 399

Query: 399 YNISHV--------------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           Y+   V               L       ++D +    +    +    +   I      G
Sbjct: 400 YS-DVVLVTSDNPRTEDPDLILKDIEAGLIEDGVAAESYNLIVDRRKAIEKAI-EMASPG 457

Query: 445 DVVVV--KS 451
           DVV++  K 
Sbjct: 458 DVVLIAGKG 466


>gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 14]
          Length = 272

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 7/244 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGI 244
              I
Sbjct: 239 GNRI 242


>gi|70727423|ref|YP_254339.1| hypothetical protein SH2424 [Staphylococcus haemolyticus JCSC1435]
 gi|68448149|dbj|BAE05733.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 686

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 93/405 (22%), Positives = 180/405 (44%), Gaps = 12/405 (2%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG+D +    + G  + ++ T+   S     IP   V+D + A  +LA+  R +    +I
Sbjct: 63  DGNDLVNK--ENG-EIGLIITENYISDLKFEIPQIIVEDSVQAFKQLAIYIRNQYTNPVI 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS+GK++T+ ++T  L          G+ N    +   + ++  + DF + E  M+ 
Sbjct: 120 AITGSMGKSSTRMLITSLLGD-YNVLENRGNNNVRAAIYNNMLKLIKNPDFAVIETSMNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDS 230
           +  +   +  ++P IA+IT I  AH S F  +++IA  K  IF+GL   TG   +N D  
Sbjct: 179 INYLENTSTFLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRIFDGLSSTTGVAIINKDTL 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           + + L  K+H      + ++  +K+  AD  +   K       + +  Q  KS     + 
Sbjct: 239 YADYLIDKAHE-NASNVLTYSINKDAKADLTVDNIKYNKGSIELSITNQENKSEIYRLNT 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I   M  N L ++  +  L   +   +  L+ F P                 TL+D+++N
Sbjct: 298 ISEGMVSNTLASILTLKSLNLPIKQEL--LNDFKPFSKILALKEIHAKTHKLTLLDDTHN 355

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+  +M  AI   +  +    G +I  +G + ++G  S   H+ L E L   N  ++   
Sbjct: 356 ASLPAMINAIRAFNSQTKFYSGHKIIAIGKISDLGRKSNETHLKLVEELENSNADYILCK 415

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              +  + + + R+ ++ +    + L   ++    +  + ++KSS
Sbjct: 416 DNELRQVVNKV-RNKNITWYPNKELLINDLKYLCNEDSLTLLKSS 459


>gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
 gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
          Length = 495

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 155/462 (33%), Gaps = 40/462 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73
           G +        + G+++DSR +     F A+ G    G  FI  A++KGA  ++ +    
Sbjct: 14  GLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTDAAGA 73

Query: 74  --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      +  V+D    L   A         T++A+TG+ GKT+    +    +
Sbjct: 74  GIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVRQIWT 133

Query: 132 SIKKTYACIGSYN----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIR 176
            +      +G+            +    P+TL R         V     E     L + R
Sbjct: 134 ELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRR 193

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
                V+   A  T     HL      E   +AKA +F   L   G   +N +D     +
Sbjct: 194 L--DGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGAEM 251

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A + A G + I       +      ++    +          K  +V  + IG   A+N
Sbjct: 252 RAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRF--AWHDKPYQVRLNLIGGFQAEN 309

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+  G+      D +   + L       G   R + A  +   + +   Y   P ++ +
Sbjct: 310 VLLACGLAIAGGEDPERVFETLPHLTTVRG---RMQLAAERDNGSAVFVDYAHTPDAVAS 366

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FH 410
           AI  L    PH  GR IA++G   +     +          +  N   V ++        
Sbjct: 367 AIKALR---PHVLGRLIAIVGAGGDRDTSKRPLMGQ----AAHENADVVIVTDDNPRSED 419

Query: 411 VLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             A++ A+                 L     L  GD +++  
Sbjct: 420 PAAIRAAVKGGAPGCIEIGDRAEAILRGADMLGPGDALIICG 461


>gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis]
          Length = 483

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 157/463 (33%), Gaps = 41/463 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +      +    + GIS +SR I P   F A++G   DG  +I  A+++GA +VV  TD
Sbjct: 8   TECVDDNNLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVV--TD 65

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                 +LS+PV  V DV   L   A         T++A+TG+ GKT+    +      +
Sbjct: 66  FDFVAENLSVPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHV 125

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRF 177
               A IG+                  P+ L R+        V     E     L + R 
Sbjct: 126 GFCAASIGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRL 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLK 236
               +    A  T +   H+   + +++   AK  +F+  L       +  DD + + + 
Sbjct: 186 --DGINLAAAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVI 243

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                 G +   + G+      ++ + +    + ++E +++          +G+    N 
Sbjct: 244 NHVTQAG-RRALTIGRKGQF-IKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           LM  G+     +  D    +L       G   R            +   Y   P +++  
Sbjct: 302 LMAAGLAITTGSSSDKVFSSLKKLKGAPG---RLELVSKTKDNASVYVDYAHKPEALE-- 356

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
             VL    P   GR I V G   +  +  +         L L     V ++  +      
Sbjct: 357 -QVLLAARPFTPGRLIVVFGCGGDRDQRKRPLMGK----LQLDKADIVIVTDDNPRTEEP 411

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +D L  +              +    L  GD +++  K 
Sbjct: 412 EKIRQDILQAAPGALEIADRSEAIYYAVGLLEAGDTLIIAGKG 454


>gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 488

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 85/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          GR + 
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEM 341

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +         ++   Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 342 IQYP----NKPIVIVDYAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
          Length = 498

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 154/420 (36%), Gaps = 39/420 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL       I       +  I+ DSR +     F  + G H DGH ++  AV+K
Sbjct: 1   MKNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA  ++    +    G   + V  V +    + K+A            +IA+TG+ GKTT
Sbjct: 61  GAVAIIAEKKISVPEG---VTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARM-----PVDVDFGIF 165
           T  +++  L         IG+ +  IG             + L R+        V     
Sbjct: 118 TTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKAKVTHVCM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--- 222
           E+    L   R          AV + +   HL     +   A+AKA++F  + + G    
Sbjct: 178 EVSSHSLVLGR--VEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKS 235

Query: 223 ---IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD +  ++        +  +++   +++A+ ++   +   + +      + K
Sbjct: 236 NKNACINIDDDYSHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKNK 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V    +G     N++  +        D +  IKAL+ F    G   R+        F
Sbjct: 296 EYPVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPG---RFELIDEGQEF 352

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +++ + Y   P  ++  ++   +I+    G+ I V G     G+        +  + + Y
Sbjct: 353 SVVVD-YAHTPDGLENILTTAREITT---GKIIVVFGC---GGDRDPMKRPIMGRIAAKY 405


>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
 gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
          Length = 508

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 159/463 (34%), Gaps = 48/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-----MVASI 78
           +  V G++ +S +    + F  + G   DG DF   A+  GA   +V+          S 
Sbjct: 23  EKDVKGLATNSHACQTGDLFIGMPGTRVDGGDFWPSAIANGAVAALVSQQAAEKTPQTST 82

Query: 79  GSLSIP-VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            S  +P V    ++  A  ++A         +  ++ +TG+ GKTTT  ++   L    K
Sbjct: 83  ESPELPCVIPSVNMTTACAQVAAAFYGYPAQQLKLVGVTGTNGKTTTTHLIEYLLECSDK 142

Query: 136 TYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLT 179
                G+           A                       +G+ E+    L + R L 
Sbjct: 143 PTVLFGTLYTRWLGSQITAAYTTPFAVELQQKLAEAVKAGCQYGVMEVSSHALHQGRVL- 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 +AV T +   HL     +E+   AKA +F      G   +N DDS+ + L  + 
Sbjct: 202 -ECPFDVAVFTNLTQDHLDYHQTMEDYFEAKALLFSPQYLQGRAIINADDSYGKRLIERL 260

Query: 240 HALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A     ++S+  + + AD    +           +             +G +   N+L 
Sbjct: 261 EA---DRVWSYSINDSTADLWAAQLSYEPNGVKGVLHTPQGEAAFELPLVGQYNLSNLLA 317

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +G    L  D+ T +  L  F    GR +R + +  Q    ++D  Y   P S++   +
Sbjct: 318 AIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQDVSVIVD--YAHTPDSLE---N 372

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
           +L    P   GR I V G     G+  ++    + ++ +      V  S          +
Sbjct: 373 LLKASRPFIPGRMICVFGC---GGDRDRTKRPKMGKIAADLADVVVVTSDNPRTEDPNRI 429

Query: 415 KDALPRSIHVHYSE----TMDGLFLFIQSSLVDGDVVVV--KS 451
            + +   I +                  +    GD V++  K 
Sbjct: 430 LEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGVLIAGKG 472


>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 505

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 159/458 (34%), Gaps = 35/458 (7%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I+    G      ++G+S DSR +AP  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 34  IEAQLEGPAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQA 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +  S     IPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  VETS-----IPVLAVKEPRRFLSIAASRFFGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
               A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAGEGVTHAAMEASSHGLDQSRL 208

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               V+   A  T +   H+     +E   +AK  +F+ L K     +  DD +      
Sbjct: 209 --DGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQLLPKGAPAVIFADDPWSAQAIK 266

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +   G   + + G+  +    L++ +    +   E+ + G+  EV     G     N L
Sbjct: 267 AAADAG-HDVRTVGRKGD-YLTLKRVEHFRHKQTAEIHIDGEIFEVDIPLAGDFQVANAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+      +   A+ AL       G   R     +     L    Y   P +++   
Sbjct: 325 VAAGLAMSTGVEPKVAMAALEKLVGASG---RLELVGHTKDGALAYVDYAHKPDALE--- 378

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALK 415
           +VL  + P   GR + V G   +     +    ++A  L+   I       S        
Sbjct: 379 NVLGSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAIRA 438

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +  +                   L  GD ++V  K 
Sbjct: 439 EIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKG 476


>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 486

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 171/478 (35%), Gaps = 51/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +  + +       +  +  DSR ++  + F A +G   DGH++I +AV +
Sbjct: 1   MITLKDILYRVSINKVIGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  +V       ++    +    V +   AL  +A            ++ +TG+ GKTT
Sbjct: 61  GAIAIVCEELPKDTVNG--VTYVKVQNAQQALAFMASNFYENPSENLQLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARMPV-DVDFGIF 165
              +L    +        + +                 + + +   L++M     ++   
Sbjct: 119 IASLLYQLYTKAGFKVGLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTDIGCEYCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R  T  ++    + T ++  HL   S   E    K + F+ L  +     
Sbjct: 179 EVSSHGIAQHR--TTGLKFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDELPSSAFALT 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A       ++     AD++ +  +       +++     + E+  
Sbjct: 237 NADDKNGMVMLQNTKAKKQ----TYALKSIADYKAQILENQFSGLLLKLN----NNELWS 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L       +L      +++ +S      G   R++  +      ++D  
Sbjct: 289 KLIGNFNAYNLLAIFATTELLGMQTMESLRLISELESVNG---RFQYLIKNKITAIVD-- 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  +  ++ I    E   I V+G     G+   +    +  + S+ +   ++
Sbjct: 344 YAHTPDALKNVLETINAIRTKNE-ELITVVGC---GGDRDATKRPKMGHIASVLSTKVIF 399

Query: 406 LSG----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            S          + +A+   +   + +                S   + D++++  K 
Sbjct: 400 TSDNPRTEDPNKIIEAIESGVEPQHFKKTLSIADRKQAIKTACSFAKENDIILIAGKG 457


>gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 486

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 98/455 (21%), Positives = 172/455 (37%), Gaps = 45/455 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             + G++ DSR +A  + FFA+ G   DG  +   AV++GA  VV  T+  AS+   +  
Sbjct: 20  REIAGLACDSRLVAKDQVFFAVPGTKADGLTYAPEAVRRGALAVV--TEQSASVPFETAA 77

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V DV  AL   +     R   T++A+TG+ GKT+         +S+    A +G+  
Sbjct: 78  LVKVADVRSALAIASARFYARQPETVVAVTGTSGKTSVAAFARQIWASLGFKAASVGTLG 137

Query: 145 N-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                           P++L R   +     V     E     L + R     VR   A 
Sbjct: 138 VVAPDGASYGGLTTPDPISLHRTLDELAGAGVTHLALEASSHGLDQHRL--DYVRLKAAG 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T ++  HL     +E    AK  +F   L   GT+ ++ D S    +   + A G+K +
Sbjct: 196 FTNLSRDHLDYHPTLEAYFQAKLLLFTHVLPADGTVVVDADSSAGHEVIDVAKARGLK-V 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S G +      L + +  +  + + +   GK   +    +G   A N LM  G+     
Sbjct: 255 FSLGFAGE-TLHLLEARPEAAATLLRLTFAGKDWALRLPLVGSFQAANALMAAGLCISTG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D    AL       GR +  +    +G    +D  Y   P +++ A+  L    P  
Sbjct: 314 AAPDAVFAALERLEGAPGRLE--KVGERRGASIFVD--YAHKPDALEKALQALR---PFT 366

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDAL 418
           + R I + G   +     +    ++A  L+     HV ++  +           A+    
Sbjct: 367 QKRLIVIFGCGGDRDAGKRPLMGEIAARLA----DHVIVTDDNPRSEDPDLIRKAILQGA 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               H+      +         L  GD++++  K 
Sbjct: 423 GSGPHIREIGDREAAIKSGIGMLEPGDLLLIAGKG 457


>gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
 gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
          Length = 523

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 141/353 (39%), Gaps = 20/353 (5%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDF 162
                  I ITGS GKT+TK ++   +     T     SYN  +G+ +T+  +       
Sbjct: 174 EDKDLIKIGITGSYGKTSTKNVMQAMIGEQFNTLMTPASYNTPMGITITIRTLLKPIHKV 233

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+G  H+GEI  L   V+P I V+T+I P HL+ F   E I   K ++ E L K G 
Sbjct: 234 FVCEMGADHVGEITNLMKFVQPSIGVVTSIGPQHLATFGSQENIIKEKMQMMELLPKDGL 293

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             LNYD+ F    + K     +    S+G KS++ D+           S   V  + + +
Sbjct: 294 GVLNYDNDFIRNYRLK----NLVKTVSYGVKSRDVDYYADDITYTRMGSSFTVVHRDEHV 349

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G     N+L  + +   L     T  +A       E R +          +  
Sbjct: 350 RIETKLLGELNILNILSAICVARHLNVPWPTIQRAAKTMKQVEHRLELKTI----NGYRF 405

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+++N+NP     A+ VLS +       R  V   M ++G +    + +    +     
Sbjct: 406 IDDAFNSNPVGSAMALEVLSMMPNT----RYVVTPGMIDLGAIQDDANKEFGRKM-KGKA 460

Query: 402 SHVWLSGF-HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     ++ + L         V   +T+   F  I   ++  D +++
Sbjct: 461 DEVILVGEIQTKSIYEGLQEVGFDMNRVIVVKTVKEAFDHIYRHVLPSDTILL 513


>gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
 gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
          Length = 493

 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 166/475 (34%), Gaps = 48/475 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DL     G +     +  + G+++DSR++ P   F A+ G    G +FI +A++ GA
Sbjct: 7   TLADL-----GLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGA 61

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+ + +       +    S  +    D   AL   A         T++ +TG+ GKT+
Sbjct: 62  SAVLTDVEGAKIADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYN----------NHIGVPLTLARMPVD---VDFGIFELG 168
                    S++      IG+            +    P+TL R+  D          + 
Sbjct: 122 VATFTRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAME 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
            S  G  +     VR   A  T     HL      +   +AKA +F   L   GT  +N 
Sbjct: 182 ASSHGLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINL 241

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D     +   +   G + + S G  K  D Q+   +  +    +    QG+  +V  + 
Sbjct: 242 NDPRGAEIALLAAERG-QRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNL 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A+N+ +  G+     A        L       G   R + A  +     +   Y 
Sbjct: 301 IGGFQAENVALAAGLAIGSGAPAGDVFAVLPRLEGVRG---RMQLAATRRNGASVFVDYA 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++  A+  L    PH  GR + V G   +     +          +  +   ++++
Sbjct: 358 HTPDAIATALKALR---PHVMGRIVVVFGAGGDRDTTKRPLMGQ----AAREHADVLYVT 410

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +           A+  A P +  V          L    +L  GD ++V  K 
Sbjct: 411 DDNPRSEDPATIRAAIMAACPEANEVG---DRAEAILRGVDALGPGDALLVAGKG 462


>gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA2]
          Length = 499

 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 156/456 (34%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQR--VDGTCFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 194 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W+     +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 312 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 366 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 421

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 422 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 456


>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
 gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
          Length = 457

 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 165/454 (36%), Gaps = 52/454 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GI+ +S+ +     F AI+G + DGH F+  A+++GA  V V  D+          +
Sbjct: 2   EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIEDPR----I 57

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D    L +L      R   K  +I +TG+ GKTTT  +L     +       IG+ 
Sbjct: 58  VKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGLIGTI 117

Query: 144 NNHIGVPL---------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              +G  +               +  +  ++    +    +S     +      +    +
Sbjct: 118 YYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKFFTTI 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   SAK  +F    +     +N DD + + + +    +  K   
Sbjct: 178 FTNLSQDHLDYHGDMENYFSAKLLLFTQYPQE-FSVINADDPYGKRIVS----VVGKRAR 232

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G  K  D ++  ++   E S +EV+ +GK      H  G   A N+   +    +   
Sbjct: 233 TYG--KEGDLRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILTAFLRGI 290

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     + +       GR + YR    +   T+I + Y   P +++  +     I+    
Sbjct: 291 DPQVVEEGVKDVR-VPGRFETYR----KDGKTVIVD-YAHTPDALEKLLRTARGIT---R 341

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALP 419
           GR + V G         +    ++A+         + L+  +         +  + + + 
Sbjct: 342 GRLLVVFGAGGNRDRTKRPLMGEVAQ----NWADVIVLTSDNPRWEDPISIIEDIMEGIS 397

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   V      +           +GDVVV+  K 
Sbjct: 398 QKNKVLVEPDREKAIRLAVEMAKEGDVVVIAGKG 431


>gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL074PA1]
 gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA2]
 gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA1]
 gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA2]
 gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA1]
 gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA2]
 gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA1]
 gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA2]
 gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL007PA1]
 gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL056PA1]
 gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA3]
 gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA2]
 gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA1]
 gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA1]
 gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL045PA1]
 gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA2]
 gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA1]
 gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA2]
 gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA3]
 gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL078PA1]
 gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA2]
 gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA3]
 gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA1]
 gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL038PA1]
 gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL097PA1]
 gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA2]
 gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA2]
 gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA1]
 gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL020PA1]
 gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 499

 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 156/456 (34%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQR--VDGTCFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 194 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W+     +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 312 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 366 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 421

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 422 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 456


>gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
 gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
          Length = 501

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 155/475 (32%), Gaps = 45/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T     + ++    G         +  DSR +   + F A  G   DG  ++  A+  
Sbjct: 5   LHTPEQAARWLRERVTG--------SLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALAS 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121
           GA   +V        G     V     +  A   +A A          + A+TG+ GKT+
Sbjct: 57  GARACLVELQGFEPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTS 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFEL 167
           T   L  AL  + +    +G+        +    +               VD  F    L
Sbjct: 117 TTWWLAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCAL 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S +G +          +A+ T     HL     +++   AK  +F          +N 
Sbjct: 177 EASSIGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSW-PGLKAAVINV 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L A S A     +++   +  A    +K          +V    +   V    
Sbjct: 236 DDGKGLELSA-SLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKL 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +   N+L  +  +  +   +  A+ A +   P  GR       L +    L+   Y 
Sbjct: 295 VGQYNVYNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMD----TLAEEGLPLVVIDYA 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  ++ L  ++    G+   V G   +     +     +AE     N   V ++
Sbjct: 351 HTPDALEKVLTALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAE----KNADRVVVT 406

Query: 408 -----GFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + LA+ D + R ++    VH             S     DVV++  K 
Sbjct: 407 SDNPRSENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKG 461


>gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens KN400]
          Length = 509

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 95/493 (19%), Positives = 182/493 (36%), Gaps = 61/493 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + +   ++       +NG+  DSR +     FFA+KG   DGHDFI  A ++G
Sbjct: 1   MRLEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV+  +  A  G        V D   A++++A     +      ++ ITG+ GKTTT
Sbjct: 61  AVAVVLEDETRAPCGMEW---IRVGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167
             ++   +S      A +G+ +                 + +  T+  +  +    +   
Sbjct: 118 TYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVME 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF------EGLEKTG 221
             SH  E R      R  +AV T +   HL     +E    +KA +F      +G++   
Sbjct: 178 VSSHALEQRR-VDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRR 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DDS+   L   + A     + S+G + +A  +        +     +     + 
Sbjct: 237 AAAINRDDSYGARLVETAVA----PVISYGLAADAAVRAENVVFSVDGIAGTLVTPFGTA 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               H +G     N+L  +     L   +D  +  +       GR +R     N+   T+
Sbjct: 293 LFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERV---HNERGVTV 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---- 397
           + + Y     +++  +  +S+++    GR I V G   +     +    +++   S    
Sbjct: 350 LVD-YAHTGDALENVLKTVSELAT---GRIITVFGCGGDRDRGKRPVMAEISGRYSHLTI 405

Query: 398 ----------LYNISHVWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSS 440
                        I    L+G   + L++   R ++  + E       +         + 
Sbjct: 406 VTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATV 465

Query: 441 LVDGDVVVV--KS 451
            V GD+V++  K 
Sbjct: 466 AVAGDIVLLAGKG 478


>gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
 gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
          Length = 488

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 163/488 (33%), Gaps = 65/488 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA        +  T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L   +  +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQS 270
            T    +N DD        +              S NADF        +        + +
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDASA-------VSMNADFKVGSHQWMKAINIHYHFKGA 282

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  +    +  +    IG     N+L+ +  +      ++  +          G   R 
Sbjct: 283 DITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---RM 339

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T+I + Y   P +++ A+    +   H +G    + G   +     +    
Sbjct: 340 EMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLMA 395

Query: 391 DLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +AE  +   I           +     +         V           F   S V+ D
Sbjct: 396 QVAEQFAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVEND 455

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 456 VILIAGKG 463


>gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
 gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
          Length = 510

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/411 (24%), Positives = 160/411 (38%), Gaps = 32/411 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DLL  +  + +   P   ++ +  DSR + P   F AI+G H DGH+FI  A+  GA
Sbjct: 4   TLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             VVV+        S  +PV  V D   AL  LA A       + T I ITG+ GK+TT 
Sbjct: 64  AAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKGKSTTT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------PVDVDFGIFELGMSHLG--EI 175
           ++    L++  +T   I + +  IG                +V   + E+ ++      I
Sbjct: 124 DLTAQLLAAAGRTVGMISTVDFQIGTRRWPNDTRQSTPEAPEVQALLREMVVAGCDTAVI 183

Query: 176 RFLTHLVRPH----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---T 222
              +H + P           +AV+  I   HL      E+  + KA++F  L +      
Sbjct: 184 EATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERHGPTW 243

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD       A   +  ++    +     AD Q +        S M +      +E
Sbjct: 244 AIVNADDPHHGTFLAAVPSQTMR--LRYALHAPADVQGQIVHSGPASSHMRIHSPWGEIE 301

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G   A N+L  L +       ++ A  A++      G   R         FT+I
Sbjct: 302 VNVPLPGRFNASNVLAALTVALTQGVPLERAAAAVAHVRAPRG---RMVSINVGQPFTVI 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            + Y  NP S +   ++L    P   GR IAV G   E     ++   ++A
Sbjct: 359 VD-YAHNPDSFEQIFTMLR---PQVTGRIIAVFGSAGERDVSKRAIQGEIA 405


>gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
          Length = 493

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 165/459 (35%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG +FI  A+++GA  V+     V + G++  
Sbjct: 22  SVLVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A 
Sbjct: 82  IDDVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TL+ +      +   E+    L + R     + 
Sbjct: 142 MGTTGNGFLDNLQQAANTTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGR--VKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK E+F   +      +N DD        +     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLELFTQHQCE-RAIINVDDEVGHAWATQLSNAI 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++    + ++A       +       ++   +  S ++    IG   A N+++    +
Sbjct: 259 AVSLKPNTEFESA-IWATDVRYAESGITIQFDGKFGSGQLHAPLIGEFNATNLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    ++      P  GR + ++              Y   P +++ A+  L   
Sbjct: 318 LSLGKDKQALLETAGQLQPVLGRMELFQTEDRAKVVV----DYAHTPDALEKALQALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
             H EG+  A+ G   +     +    ++AE L       V L+  +  +         +
Sbjct: 372 -VHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLG----DRVVLTDDNPRSEDPVQIVKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LSGLSKPAEAIVQHDRFKALSYAVENASPKDIILLAGKG 465


>gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 495

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 158/460 (34%), Gaps = 41/460 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V G+++DSR + P   F A+ G    G  F+  A+  GA  ++ +    A   
Sbjct: 18  GRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTDAAGAALAR 77

Query: 80  SLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                    +   +D    L   A     R  AT++A+TG+ GKT+         +++  
Sbjct: 78  EALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFTRQIWAALGH 137

Query: 136 TYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTH 180
               IG+            +    P+TL R+  +     V     E     L E R L  
Sbjct: 138 AAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSHGL-EQRRL-D 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V    A  T     HL      E   +AKA +F   L   GT  +N DD     + A +
Sbjct: 196 GVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPRGPEIAALA 255

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A   + I + G   +AD +L   +  +    +    QG+        IG   A N+ + 
Sbjct: 256 RARAQRVIGT-GFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQAWNVAVA 314

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +        +      S      G   R + A  +     +   Y   P ++  A+  
Sbjct: 315 ASLAIGAGDAPERVFATFSRLQGVRG---RMQLAATRQNGASVFVDYAHTPDALATALKA 371

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
           L    PH  GR + V G     G+  +     +    +  +   ++++          A+
Sbjct: 372 LR---PHVMGRIVVVFGA---GGDRDRGKRPLMGRAAAD-HADVLYVTDDNPRTEDPAAI 424

Query: 415 KDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + A+  +    H         L    +L  GD +++  K 
Sbjct: 425 RRAILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
 gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
          Length = 479

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 99/466 (21%), Positives = 165/466 (35%), Gaps = 59/466 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
                +  V  I+ +S+ + P + FFAIKG   DG+DFI  AV KGA  VV       + 
Sbjct: 7   FNTDSEVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGAVAVVSTEP---AK 63

Query: 79  GSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +P F VDD+  A+ K               I ITG+ GKT+   +L    +     
Sbjct: 64  KKYPVPYFQVDDIDLAMAKAAVKFYKNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIP 123

Query: 137 YACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            + IG+ N  I                     + +M       +     SH  E++    
Sbjct: 124 CSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKR-VF 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLK 236
            +   +A+ T +   H+      E   +AK ++F+ L    +   T  +N DD +   L 
Sbjct: 183 GLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQYGLRLA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K  A       S         +    K+      +    +G+S     + +G H   N 
Sbjct: 243 DKIKAKTTLIPVSL-------VEAENVKESLNG--VTFSYKGESAS--INLLGKHNLYNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  +        D+ TA+K ++      GR +R      Q F+  +D +Y     S+  A
Sbjct: 292 VFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQR--VNKGQPFYVFVDFAY--TTESLMKA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
              L    P+  G  I V G   +     +        + +  N SHV L+  +      
Sbjct: 348 YETLE---PYKNGNIITVFGCGGDRDRTKRPLMG----LAACQNSSHVLLTNDNPRTEDQ 400

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQ---SSLVDGDVVVV--KS 451
                D L         E +    L I+   S   + D++++  K 
Sbjct: 401 QQIFNDILNGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKG 446


>gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA1]
 gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA2]
 gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA1]
 gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL086PA1]
 gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA1]
 gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA2]
 gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA1]
 gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL092PA1]
          Length = 499

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 156/456 (34%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQR--VDGTCFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 194 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W+     +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 312 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 366 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 421

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 422 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 456


>gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 494

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 162/459 (35%), Gaps = 52/459 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           V  + +DSR+I   + F AI G   DG  FI  AV +GA  VV         GS+     
Sbjct: 27  VEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGSVEWLDA 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  V ++   L++LA          +I +TG+ GKTT  +++   L  + +  A +G+
Sbjct: 87  VPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFLTHLVRPHI 186
             N                I +  TL+ +  D    ++  + +S LG ++     +   +
Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAED--NAVYTAMEISSLGLVQGRVKALDFEV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---AKSHALG 243
            V T ++  HL     +EE A AK  +F    K     +N DD   +      + + A+ 
Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEVGKAWMVDLSNAVAVS 263

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +  + +S                  +         ++    IG   A N+L+    +
Sbjct: 264 LLPLSGYQQS----VWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFATL 319

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D  T I       P  GR + ++              Y   P +++ A++ L   
Sbjct: 320 LSLGIDKQTLIDTAPQLQPVIGRMELFQVPNKAKVVV----DYAHTPDALEKALAALR-- 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
             H  G+  A+ G   +     +      AE  +      + +S  +  +         +
Sbjct: 374 -VHCSGKLWAIFGCGGDRDTGKRPMMAVTAEQFA----DKIIISDDNPRSEDPALIVKDM 428

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L                 F      + D++++  K 
Sbjct: 429 LAGLSEPEAAFVEHDRYQAVKFALEQAGNNDIILLAGKG 467


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 171/463 (36%), Gaps = 47/463 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++A  G  IG +        S DSR     E F A++    DGHD+I  A+  GA 
Sbjct: 5   LAELIEA-GGTVIGPIHADTFTDWSYDSRLTVAGECFIALRTTRADGHDYIPAALAAGAR 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++          + +  V    D    L + A     R + T+IA+TG +GKT  +  +
Sbjct: 64  GILCTRP---PHDAGTATVVVCPDPQALLLRWASNRLQRLQPTVIAVTGGIGKTLARRAI 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++   T+    ++N+ +G+P+ LAR+  D  + + E    HL     L     P +
Sbjct: 121 AAVLATHAPTFQSRRNFNSLLGLPIALARLERDHQYAVLEFAGEHLP---PLAAAFPPRL 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T             +  A         L + G   +             +       
Sbjct: 178 AVVT---------AGTDDATAR-------FLARQGVTVI-------------AAEGVSSA 208

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG       +        +     V  QG  + +     G       L  + +    
Sbjct: 209 HLTFGTGSGCAIRATAISYRRDGVDCVVIGQGLELPITIPLPGPPGVAAALAAVAVGLHY 268

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+      G   R R         ++D+S+NA P +M+AA+  L+ I   
Sbjct: 269 GVRPAAIRQALAGLDAPAG---RLRPLPGANGELILDDSFNATPEAMRAALQTLAAIPT- 324

Query: 367 GEGRRIAVLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
             GRRIAVLG   E+    +     +L    +  +  ++ L G     +  A   +   +
Sbjct: 325 --GRRIAVLGTPTELPAVDATPLLTELGMQAA-RSAEYLVLKGMGAATMAQAARLANPTV 381

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +H  +T + +   +  S  D DVV+V         +++  LL
Sbjct: 382 TIHVVDTNEAIRAALPPSRNDQDVVLVSGGAGERLEQVVAPLL 424


>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 485

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 172/457 (37%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V+D+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG
Sbjct: 75  SYVLVEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IG 132

Query: 142 SYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +  A                 +   +++ + E+  SH  EI     +V   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VEVVDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+      +N DD + + L  +   +   
Sbjct: 191 YALFTNLTQDHLDYHITMENYFQAKRKLFLKLKDINNSVINIDDKYGKRLYDE-FIIDNP 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G     D +        +  +++++ + +  +V    +G     N L  +GIV  
Sbjct: 250 EIISYGID-GGDLE----GDYLDDGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGIVLK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I  
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC--GQDYKVIVD--YAHTPDALVNVIVAARNIK- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
               R I + G   +     +      AE LS      V L+  +            +K 
Sbjct: 360 -NGNRIITIFGCGGDRDRTKRPIMAKAAEDLS----DIVILTSDNPRTESPEQIFDDVKK 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +S    +    +       +     D++++  K 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINIAEKNDIILITGKG 451


>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
 gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
          Length = 484

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 161/443 (36%), Gaps = 38/443 (8%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+            V G +ID+R +AP   F A +G   +G D+I  AV+ GA  
Sbjct: 12  AEVAKAVSA---AGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGAIA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +V   +                +      +LA           +A+TG+ GKT+T E+  
Sbjct: 69  IVARPEAQVDGAIH----IAAANPRQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELAR 124

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSH 171
                +    A IG+      V      +                   V    FE     
Sbjct: 125 QIWRMLGHNAASIGTLGVTTSVDQVSTGLTTPDIVTFLANMAGLRREGVTHAAFEASSHG 184

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDS 230
           L + R  T  +       T ++  HL     ++    AK  +F+  +   G+  +  DDS
Sbjct: 185 LDQYR--TEGLPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDS 242

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + E   A++   G++ + S G    A  QL           +E++ +G   +V    IG 
Sbjct: 243 WSEKAIARATKRGLR-VLSVGVQGRA-LQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGA 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           + A N L   G+V     D    ++ L    P  GR +R   +       +    Y   P
Sbjct: 301 YQAANALTAAGLVIATGGDAARVMELLGRVQPVRGRLERAVISQTGAPVYV---DYAHTP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             ++AAI  L    PH +GR I + G     G+        + +V +  +  HV ++  +
Sbjct: 358 DGLRAAIEALR---PHTKGRLITLFGA---GGDRDAGKRPQMGKVAADLS-DHVIVTDDN 410

Query: 411 VLALKDALPRSIHVHYSETMDGL 433
             + + +  R+  +  +     +
Sbjct: 411 PRSEEPSAIRAAVLAGAPDAQEI 433


>gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 471

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 162/466 (34%), Gaps = 52/466 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +    +  ++G+  DSR I     F AI G   DGH  I  +++ GA  ++  T  V 
Sbjct: 2   RLVFEGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQTLPVT 61

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 +    V D   AL ++          K  +I +TG+ GKTT   +L      + 
Sbjct: 62  LRPD--VTYICVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLG 119

Query: 135 KTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELGMSHLGEIRFLT 179
                I +  N I   +                L +M  +    +F    SH  + + + 
Sbjct: 120 YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +    + T +   HL      +     K   F+ L        N DD     +   +
Sbjct: 180 GL-QFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFFDLLPTGAFALANKDDKNGAFMLQNT 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A        +     ADF+ R  +     + M +       E+    +G   A N+L  
Sbjct: 239 KAHKK----FYSLQSLADFKSRILESHFNGTLMTIN----DKELSTLLVGKFNAYNLLAI 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G   +L  + D  +  LSV  P  GR +      ++GF  ++D  Y   P ++   ++ 
Sbjct: 291 YGTAILLGQNSDEILVLLSVLRPVIGRFE--TLNASRGFTVIVD--YAHTPDALINVLNT 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----------- 408
           +++I    +G+ I V+G     G   +     +A      +   +  S            
Sbjct: 347 INEILAR-KGKIITVIGC---GGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGDII 402

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVV--KS 451
             +LA  D + +   +   +  + +    + +     D+V++  K 
Sbjct: 403 EDMLAGLDDIQQKETICIVDRKEAIRTACLLA--QPNDIVLIAGKG 446


>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 500

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 166/455 (36%), Gaps = 37/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           +  ++ IS DSR I     F AI G   DGH FI  AV +GAG++VV++   +   S   
Sbjct: 27  ERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFIPQAVAQGAGVIVVSSMHQSQDFSHVV 86

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VD+    L+ +A     +    I A+TG+ GKT+    +         +   
Sbjct: 87  KADIPILVVDNTRRFLSLVAARLYGKHPEKIFAVTGTSGKTSVASFVQQISQHAGLSSFQ 146

Query: 140 IGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVR 183
           IG  +    +     R+                         E     L + R     ++
Sbjct: 147 IGPISLMPSLQREDNRLTTPSPVYIAQALAYLASQGTTHVSIEASSHGLDQHRL--DGIK 204

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFL--NYDDSFFELLKAKSH 240
                 T     H+      +   +AK  +FE L   G+   +  N DDS+   +  ++H
Sbjct: 205 FIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLPKGSPAVICNNDDDSWSNKVMERAH 264

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + + S G  K    +L+   Q +++  + + ++GK  + +    G     N L++ 
Sbjct: 265 NAGCR-VLSVGY-KGTFIRLKNLTQINDKQQVSISVEGKDFDFLFPLQGAFQVSNALVSA 322

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+      DV   I+ L   +   G   R+    N      I   Y   P S++  +  L
Sbjct: 323 GLCIATGIDVPVVIEYLEKVNVIPG---RFEFIGNNSKGGRIYVDYAHTPNSLEMVLRNL 379

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALP 419
             I+    GR I V G   +     +     +A E+  L  ++       +  A++  + 
Sbjct: 380 RNITS---GRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTDDNPRSENPQAIRAEII 436

Query: 420 RSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                   E           S L   DV+VV  K 
Sbjct: 437 NGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKG 471


>gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
 gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
          Length = 494

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 160/461 (34%), Gaps = 52/461 (11%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-- 82
             V  + +DSR+I   + F AI G   DG  FI  AV +GA  V+       + G +   
Sbjct: 25  IVVEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWL 84

Query: 83  --IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +PV  V ++   L++LA          +I +TG+ GKTT  +++   L  + +  A +
Sbjct: 85  NAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVM 144

Query: 141 GSYNNH---------------IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFLTHLVRP 184
           G+  N                I +  TL+ +  +    ++  + +S  G ++     +  
Sbjct: 145 GTTGNGFLDNLKIAANTTGSAIEIQRTLSELAEE--SAVYTAMEISSHGLVQGRVKALNF 202

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL---KAKSHA 241
            + V T ++  HL     +EE A AK  +F    K     +N DD   +      + + A
Sbjct: 203 EVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEVGKAWVSDLSNAIA 261

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           + +  +  + +S                  +         ++    IG   A N+L+   
Sbjct: 262 VSLSPLTGYQQS----VWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFS 317

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L  D    +   S   P  GR + ++              Y   P +++ A++ L 
Sbjct: 318 TLLSLGIDKQILVDTASQLQPVIGRMELFQTPNKAKVVV----DYAHTPDALEKALAALR 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
               H  G+  A+ G   +     +      AE  +      + +S  +  +        
Sbjct: 374 ---VHCSGQLWAIFGCGGDRDTGKRPMMAVTAEQFA----DKIIISDDNPRSEDPALIVK 426

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   L                 F        D++++  K 
Sbjct: 427 DMLAGLSEPESAFVEHDRYQAVKFALEQAGSNDIILLAGKG 467


>gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
 gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
          Length = 508

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 162/463 (34%), Gaps = 48/463 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +  DSR I P + F A  G   DG+ FI  A+  GA  V+ +           IP 
Sbjct: 22  EIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDPRNFVWKSEWRIPA 81

Query: 86  FGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             VDD+     L    V      K  ++ ITG+ GKT+       A+ ++    A +G+ 
Sbjct: 82  LAVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTAVLGTL 141

Query: 144 NNHIGVPL----------TLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            +     L          T+ +      +       + E+    L + R  T      +A
Sbjct: 142 GSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGR--TMGTAFSVA 199

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++T ++  HL     ++  A+AK+ +F          +N DD     L  +     IK +
Sbjct: 200 LLTNLSRDHLDYHQDMDAYAAAKSSLF-FWPGLKYAVVNMDDVLGVELSRQLVTKPIKMM 258

Query: 248 -YSFGKSKNAD------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            Y F   +N D            K        +++ +     +    +G   A N+L  +
Sbjct: 259 GYGFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNLLAVV 318

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +      +  A+ +L       G   R          T+I + Y   P +++  +  L
Sbjct: 319 AALLASGIRLPDAVGSLQSVQSIPG---RMEKYYGINQSTIIVD-YAHTPDALEKVLCTL 374

Query: 361 SQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            ++        R   V+G     G+  +     + EV +      V  +  +  +     
Sbjct: 375 RELLRIEGRNARLFCVVGC---GGDRDRGKRAMVGEVATRL-ADEVIFTSDNPRSEDPLR 430

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVV--KS 451
            ++D    ++  +Y   +D      Q  ++    D+V++  K 
Sbjct: 431 IIEDIAAGAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKG 473


>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
 gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
          Length = 497

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 177/460 (38%), Gaps = 47/460 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V GIS +S S   +E F  + G   DG +F   A++ GA  VV++           +
Sbjct: 24  NEEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQSAIKAGAVAVVISPQAAIKFPINDL 83

Query: 84  P-VFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  V+DV+   +++A A          +I +TG+ GKTTT  ++   L+  KK  A I
Sbjct: 84  HCVIIVEDVILTASEIATAFYSYPSEDIKMIGVTGTNGKTTTTHLIEYFLTECKKNTALI 143

Query: 141 GSYNNHIGV------------PLTLARMPVDV----DFGIFELGMSHLGEIRFLTHLVRP 184
           G+  +                P   A++   V    ++ + E+    L + R        
Sbjct: 144 GTLYSRWNGFKQTSIHTTPFSPELQAQLSQAVIDKNEYCVIEVSSHALVQGR--VKGCGF 201

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++++ T +   HL     +E    AK  +F      G   +N DDS+ E L      LG 
Sbjct: 202 NVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPEYLQGKAVVNIDDSYGERL---IQYLGP 258

Query: 245 KTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + +YS+      ADF         ++    ++  G + E     +G     N+L  +  +
Sbjct: 259 QKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPGGNFEFQSPLVGKFNLSNLLAAIATL 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D++T I  L  F    GR ++   +  Q    ++D  Y   P S++   ++L   
Sbjct: 319 FHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDISVIVD--YAHTPDSLE---NLLKAT 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALK 415
            P   G+ I V G     G+  +S    + ++ +      V  S           +  + 
Sbjct: 374 RPFISGKVICVFGC---GGDRDRSKRSIMGKICAKLADISVLTSDNPRTEEPEQILSDIL 430

Query: 416 DALPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVV--KS 451
           + +P++ +               +++    GD V++  K 
Sbjct: 431 EGVPKNANFWVISNRTEAIKTAILKAD--PGDGVLIVGKG 468


>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
 gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 184/476 (38%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AIAILC--EDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLA----RMPVDVDFGIFEL 167
             +L             I +  N+I             P+TL     RM  +    +F  
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + ++ L +    + T +   HL     +E    AK + F+ L K      N 
Sbjct: 179 VSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNL 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    
Sbjct: 238 DDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y 
Sbjct: 290 IGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S
Sbjct: 346 HTPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 408 G-FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                   +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 501

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 158/475 (33%), Gaps = 51/475 (10%)

Query: 6   TFHDLLQAI--QGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +++  +   GH +   P   +  + G+  DSR + P + + A+ G  + G DF   A
Sbjct: 14  TLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVG 118
             +GA  ++ +        S  +P   VDD   AL            +   +  +TG+ G
Sbjct: 74  TARGAVAMLSDR------PSDIVPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNG 127

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDF 162
           KT+T  +L  AL +       +          +  A                 +   VD 
Sbjct: 128 KTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPEACELQQSFVEFVEEGVDA 187

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L E R      R  + V T +A  HL     +E   +AKA +FE       
Sbjct: 188 VAMEVSSHGLAEHRI--DGSRFDVGVFTNLARDHLDYHPDMEAYYAAKARLFERDLCERA 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                DD +   L A+          +F  +   AD      +     S   +  +G+ +
Sbjct: 246 AV-CIDDDYGRRLAAEVAVPH----LTFSARDPGADVYATTVRAQRWGSTFTLHHRGERV 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G H   N +  L  +S+   D+  A+  +       GR +R      Q F  L
Sbjct: 301 PVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLERVDV--GQPFLAL 358

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAE 394
           +D  Y  N A        L  ++P   GR + VLG   E           + + + ++  
Sbjct: 359 VD--YVHNTAGQHRLFPYLRSVTP---GRIVVVLGATGERDPGKRAPLGFTAARYAEVVV 413

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V      S         +A       +  V                   GD V++
Sbjct: 414 VTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTVLL 468


>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 503

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 166/489 (33%), Gaps = 59/489 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL +I+  ++       + GIS  S  +     F  ++G   DGH ++  A Q 
Sbjct: 1   MMKLKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA   +V          + IP + V +   AL KL          K  +I IT + GKTT
Sbjct: 61  GAVAAIVEELQ----EDVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLIGITATNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE--L 167
           T  M+   L    +    IG+    I    T A +               VD G+    +
Sbjct: 117 TSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHVTM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S           V   I  +  I+  H+ +    E+   AK+ +     +     LN 
Sbjct: 177 EVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNASENSIAVLNL 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEV-----------Q 275
           D  +   L  ++ A     + +FG  SK      +     + ++   +           Q
Sbjct: 237 DCPYSASLVDQTKA----EVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQQ 292

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +    EV     G H   N ++ + +  +      T  + L  F   E   +R++    
Sbjct: 293 YEPSEFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVE---RRFQFIFE 349

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAE 394
           +    +  + + AN  ++   +  L  +      +   V     E G      + + +A 
Sbjct: 350 EDIKII--DDHFANSGNIDVTLGTLKYMDYE---KLHLVYAIRGERGPTVNRENAEAIAR 404

Query: 395 VLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMD------GLFLFIQSSL------ 441
                 I+ +  +        KD +  +    + E M        LF  +  S+      
Sbjct: 405 WAPKLGITEIIATKSVSHVTHKDRVTEAELTVFQEVMRDAGIKVDLFDELPDSICYAIGK 464

Query: 442 -VDGDVVVV 449
             +GD++++
Sbjct: 465 ANEGDLILL 473


>gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
          Length = 481

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/476 (15%), Positives = 160/476 (33%), Gaps = 51/476 (10%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               D+L+       G   +    +N I  DSR       F  I G   DGH +I  A++
Sbjct: 1   MKLKDILEGYPHSLNGNKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYIDSALK 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKT 120
            G  ++  + ++        I     ++   AL        +       +I ++G+ GKT
Sbjct: 61  LGVKVICHSEELEGYKDD--ITYIKCENTRNALAYFANRFYSFPSKNLKLIGVSGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH--------IGVPLTLARMPV--------DVDFGI 164
           +  ++      ++      IG+            I     +  +          DVD+  
Sbjct: 119 SFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDMVKNDVDYCF 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R     +  +I V + ++  HL     +EE   AK +++  +       
Sbjct: 179 LEVSSHGLVLDR--VSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLYYMV--DRFSV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD +   L  +      K + SFG+ + +D+++   +    +S   +       + V
Sbjct: 235 INIDDDYGHRLYNELKEDK-KDVISFGEKEQSDYKITIKELSLSKSSFTLTKGNNKYDFV 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + IG     N+   + I        +   +A+  +H   GR +R            I  
Sbjct: 294 INSIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGTNGRIERV--------AEDIFI 345

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +M+  + ++ ++S     +   V G     G         +  V   Y  + +
Sbjct: 346 DYAHTPDAMEKILKLIREVSSK---KITLVFGC---GGNRDHGKRPIMGSVSEKYADNII 399

Query: 405 WLSG--------FHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKS 451
                         +  + + +          +  + +   +++   D ++V+V  
Sbjct: 400 LTMDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNK-KDDEIVLVLG 454


>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAb1]
 gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 487

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 156/456 (34%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PGLRCRVINLDDDFGRRLAGEEQ---DSEL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+ +         +        +    +G     N+L  +G +  L
Sbjct: 251 ITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   ++ L       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 311 GYPLGDILRTLPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
              R + + G   +     +     +AE L+      V ++  +         +  ++  
Sbjct: 364 AAARLLCLFGCGGDRDAGKRPLMAAIAERLA----DGVLVTDDNPRTEASAAIIADIRKG 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V +  +       + +S    DVV++  K 
Sbjct: 420 FAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
 gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
          Length = 482

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 184/476 (38%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AIAILC--EDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLA----RMPVDVDFGIFEL 167
             +L             I +  N+I             P+TL     RM  +    +F  
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + ++ L +    + T +   HL     +E    AK + F+ L K      N 
Sbjct: 179 VSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNL 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + +     +Y++     +DF+ R  +   E   ++      + E+    
Sbjct: 238 DDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y 
Sbjct: 290 IGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S
Sbjct: 346 HTPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 408 G-FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                   +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
 gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
          Length = 496

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 161/463 (34%), Gaps = 49/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSRS+ P + F A+ G   DG + I  A+ +GA  V         +    +
Sbjct: 16  DPLIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDV 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +          +  ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHALEQGR--VAALEFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
           IAV+T ++  HL     +E   +AKA++F          +N DD F   L A        
Sbjct: 194 IAVMTNLSRDHLDYHGSMEAYEAAKAKLFAW-PSLRCQVVNLDDDFGRRLAADFARRPSV 252

Query: 245 ----KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + S+  +S  A    R+     +     +        +    +G     NML  
Sbjct: 253 DHIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRFNLSNMLAA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  L   +D  +K         GR +R       G   L+   Y   P +++  +  
Sbjct: 313 VATLLALDYALDEILKVTPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L    PH  G+ + + G   +     +    ++AE L+      V ++  +         
Sbjct: 369 LR---PHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLA----DRVLVTDDNPRTEDPSRI 421

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++    R   V +          + ++    DV+V+  K 
Sbjct: 422 FDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKG 464


>gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
 gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
          Length = 488

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 170/479 (35%), Gaps = 51/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL  +    +       V  +  DSR+I   + F A+KG   DGH FI  AV  
Sbjct: 1   MRNLKDLLYKVSLELVIGPTDIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIEKAVAS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  V++  + +    +  +    VD+   AL  +             ++ +TG+ GKTT
Sbjct: 61  GAVAVLL--EDLPDYQAEHVTYIQVDNAHKALALIGANYYDNPSKDLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTL-----ARMPVDVDFGIF 165
           T  +L      +      I +    I             P+T+     A     VD+   
Sbjct: 119 TTSLLYQLFKKLGFKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAAMRDAGVDYCFM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + + R     +     + T +   HL   +   E    K   F+ L        
Sbjct: 179 EVSSHGIDQQRIT--GLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFFDMLPSDAFALT 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E +   + A        +      D++ +  +         +QL+  + E+  
Sbjct: 237 NRDDKNGEFMLQNTKARK----LGYALKTYTDYRAQIIENQFGG----LQLKVNNQELWT 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A N+L   G    L  +    ++A+S      GR + +  A      T I + 
Sbjct: 289 KMIGEFNAYNVLAIYGCAIELGLESTEVLEAISQLDGVSGRFQYFTTAAQH--ITAIVD- 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  +  ++ I    E + I V+G     G+  +S    +A + +  +   ++
Sbjct: 346 YAHTPDALKNVLETINAIRTRNE-KLITVVGC---GGDRDKSKRPVMANIAASLSDLIIF 401

Query: 406 LSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S              + A  +A+     +  ++  + +   +Q      D++++  K 
Sbjct: 402 TSDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQ-MAQQNDIILIAGKG 459


>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
 gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
          Length = 485

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 165/453 (36%), Gaps = 44/453 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++        +
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNVSYV 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGS 142
            +  +   LG +         + K  II +TG+ GKT++  M+   +  I  T    I  
Sbjct: 78  LIEEIRHKLGYIASNFYEW-PQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTIEY 136

Query: 143 -YNNHIGVPLTLA------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
              + +   +                +   +++ + E+    L   R    ++    A+ 
Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR--VDVIDFDCALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD++ + L  +   +    I S
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNYGKRLYDE-FIVDNPEIIS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G     D +        +  +++++ + +  +V    +G     N L  +GI   +   
Sbjct: 254 YGID-GGDLEGEYL----DDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I      
Sbjct: 309 MEEILKRVSNIKAAPGRFEALNC--GQDYKVIVD--YAHTPDALVNVIVAARNIKNVN-- 362

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           R I + G   +     +     + E LS      + L+  +            +K    +
Sbjct: 363 RIITIFGCGGDRDRTKRPIMAKVVEDLS----DIIILTSDNPRTENPEQIFTDVKKGFIK 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S    +    +       +     D++++  K 
Sbjct: 419 SDDYIFEPDREKAIKAAVNMAEKNDIILITGKG 451


>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 544

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 160/476 (33%), Gaps = 72/476 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++ DSR + P   FF + G   DGH F   AV +GA  +VV   +      +     
Sbjct: 58  ISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVERYV-----DVDALQI 112

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V     ++ + A        S+  ++ +TG+ GKTTT  ++   L +  +    IG+  
Sbjct: 113 RVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVEAILVAQGRRVGLIGTNG 172

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N +G     A+                     D  + E+    L ++R L   V   +A+
Sbjct: 173 NRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLRVL--GVDFDLAL 230

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGT--------------------IFL 225
            T +   HL     +E    AK  +F  L    K G                       +
Sbjct: 231 FTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATTLQGVPKRAII 290

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD       A S A     + ++G   +A  + R W         +V   G  + +  
Sbjct: 291 NADDPNAGFFIAASAA----PVITYGIEADAMIKGRDWAVTPHGLTCDVLYPGGEVRLNL 346

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L        +  D +    AL       GR +R      Q F  ++D  
Sbjct: 347 QLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGRFERIDL--GQPFSVIVD-- 402

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +     ++    GR I V G     G+  ++    +  V++  +   + 
Sbjct: 403 YAHTPDGLENVLVTARALA---RGRVITVFGC---GGDRDRTKRPKMGAVVARLSDVAIV 456

Query: 406 LSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S          + +     L  +  VH             S    GD+V++  K 
Sbjct: 457 TSDNPRTEDPRRIIEDILPGLADAGDVHVEPDRSSAIALALSLAQPGDLVMIAGKG 512


>gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 497

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 170/480 (35%), Gaps = 51/480 (10%)

Query: 8   HDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +L++A+    +   I     V  +  DSR +     F AIKG ++DGH  I   V +GA
Sbjct: 6   KELIEALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAIAEVVAQGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L++V           +  V         A+           K  ++A+TG+ GKTTT  
Sbjct: 66  KLIIVEQLPANYQTIPANFVLVDSSFRAQAILANKFYQEPSRKLKVVAVTGTNGKTTTSS 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELG 168
           M++  L+S+      IG+ +  +      A                 +       + E  
Sbjct: 126 MISDLLTSLDHKTGKIGTLHYKVADTYYPAVNTTPNALHLQALFAEMLERGCQDAVIEAS 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222
              L   R          A+ T +   HL     ++  A AK+ +F  L +         
Sbjct: 186 SHALSLGRLW--YTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQLGQAFHQGRPRL 243

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD ++E++   + A     + ++    + A     + +        ++    +  
Sbjct: 244 AIINKDDPYWEVMAQATAA----DLVTYSLVDEEATAYASQIQNKETGLAFKLHFNDQVF 299

Query: 282 EVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           E+     G++   N L   L +      DV   ++A   F    GR +    ALN+ F  
Sbjct: 300 ELELPMRGHYNVSNYLAAFLCLACYYEIDVANILRATKDFKGVSGRMEV--LALNKDFDV 357

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D ++ ++     A   V+ ++  H +GR +A++G     G         + +VL  Y 
Sbjct: 358 VVDFAHTSD-----ALERVMQELVSHKQGRLLALMGHSG--GNRDSGARPGIGDVLFNYA 410

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVVV--KS 451
              V+ +          +   +   +        E      + +      GDV++   K 
Sbjct: 411 DYIVFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKG 470


>gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 493

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 161/459 (35%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++  
Sbjct: 22  SVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  IDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TLA +      +   E+     G I+     + 
Sbjct: 142 MGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSH--GLIQGRVKSLS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +      +N DD        +     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCD-QAIINVDDEVGAAWAKQLTNAI 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++    + K+A     +         +    Q     +    IG   A N+++    +
Sbjct: 259 AVSLAPTTEFKHA-LWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    +   +   P  GR + ++              Y   P +++ A+  L   
Sbjct: 318 LSLGFDKSDLLATAAQLQPVLGRMELFQAENRAKVVV----DYAHTPDALEKALQALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLAL 414
             H +G+  A+ G   +     +    ++AE L         +  +   V++       +
Sbjct: 372 -VHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVFIV----KDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYALENAAPQDIILLAGKG 465


>gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 502

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 149/459 (32%), Gaps = 53/459 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR + P + F A  G   DG  +I  A+  GA  V        +        + V
Sbjct: 29  GVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQV 88

Query: 89  DDVLGA-LNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            ++  A L +L          R   + ++IA+TG+ GKT+  + +     +  +  A IG
Sbjct: 89  ANLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAA---THPRRCAVIG 145

Query: 142 SYNNHIGVPL-----------TLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +   L           TL R        D      E     + E R      R  
Sbjct: 146 TLGAGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRL--DGARVD 203

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T +   HL   + +   A AKA +F    +      N DD F   L A S A    
Sbjct: 204 VAVFTNLTRDHLDYHATMAAYAQAKARLFAW-PRLRLAVSNLDDPFGRELAALSTAT--- 259

Query: 246 TIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  + +   AD      +    ++  +     +        V    +G +   N+L   
Sbjct: 260 KVIGYTQQAGADDRQGTIRAENIEETIDGLRFRLCAPNGRALVESGLLGRYNVSNLLAVA 319

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++           +  +      GR +     +      L+   Y   P ++++A+  L
Sbjct: 320 AVLIDAGLTPKAVAERFAQLSSPPGRLE----KIGGHNEPLVIVDYAHTPDALESALMAL 375

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------L 414
             ++       + + G   +     +     +A      +   V L+  +  +      L
Sbjct: 376 RPVANARGAGLVVIFGCGGDRDRGKRPLMAAVA----ARHADRVVLTSDNPRSENEHAIL 431

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            D L  +                  +    DVV++  K 
Sbjct: 432 ADILAGAPTALVIADRGEAIRRTLLAAHPADVVLIAGKG 470


>gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
          Length = 485

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 165/453 (36%), Gaps = 44/453 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++        +
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNVSYV 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGS 142
            +  +   LG +         + K  II +TG+ GKT++  M+   +  I  T    I  
Sbjct: 78  LIEEIRHKLGYIASNFYEW-PQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTIEY 136

Query: 143 -YNNHIGVPLTLA------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
              + +   +                +   +++ + E+    L   R    ++    A+ 
Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR--VDVIDFDCALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD++ + L  +   +    I S
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNYGKRLYDE-FIVDNPEIIS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G     D +        +  +++++ + +  +V    +G     N L  +GI   +   
Sbjct: 254 YGID-GGDLEGEYL----DDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I      
Sbjct: 309 MEEILKRVSNIKAAPGRFEALDC--GQDYKVIVD--YAHTPDALVNVIVAARNIKNVN-- 362

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           R I + G   +     +     + E LS      + L+  +            +K    +
Sbjct: 363 RIITIFGCGGDRDRTKRPIMAKVVEDLS----DIIILTSDNPRTENPEQIFTDVKKGFIK 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S    +    +       +     D++++  K 
Sbjct: 419 SDDYIFEPDREKAIKAAVNMAEKNDIILITGKG 451


>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 494

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/478 (18%), Positives = 158/478 (33%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQ ++           V  I+  SR I P   FFAIKG H DGH FI   + + 
Sbjct: 1   MLLKELLQGVEVLQTIGDTSQEVGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQQ 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
             ++VV  + +    +  +    V D   A+ ++A         +  ++ +TG+ GKTT 
Sbjct: 61  GKVLVV--EDLPEALAEGVTYVQVTDTSRAMGQIAAHFYGHPSEQLRLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             +       +      I +   +I                +   L RM    V     E
Sbjct: 119 ASLSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    +   R     +     V T +   HL       +    K + F+ L KT     N
Sbjct: 179 VSSHGIALHRI--EGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDHLPKTAFALTN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D     +   + A       ++   + ADF+ +  +       + V     + EV   
Sbjct: 237 IEDKNGAYMLQNTSAHKS----TYALGRAADFKGQLLESTFAGMTLRV----GNHEVWTS 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N+L       +L  +    +  +S      G   R++  ++    T+I + Y
Sbjct: 289 LIGRFNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAG---RFQYFVSPSGVTVIVD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  I  +  I    + R I V+G      +  +     +A  LS      V L
Sbjct: 345 AHTPDALQNVIETILDIKDPSQ-RLITVVGCGGNRDKGKRPIMAHIATSLSE----KVIL 399

Query: 407 SGFHVLA----------LKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +                  P + H                     GD+V++  K 
Sbjct: 400 TSDNPREEDPEEILREMEAGITPENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKG 457


>gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2866]
          Length = 488

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 166/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +   +A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36]
 gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36]
          Length = 503

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 162/459 (35%), Gaps = 43/459 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
           +  VN + IDSR +   + F AI G   DG  FI  A++ GA  V+ + D  A  G +  
Sbjct: 29  ELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLKDADNEAEHGHIDY 88

Query: 83  ------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 I  FG++  L AL           +  +I +TG+ GK+T  +++   ++ +   
Sbjct: 89  IDQRPIISFFGLNQALSALAD-NFYQSPSQQLKLIGVTGTNGKSTITQIIANWVTLLAGK 147

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
              +G+  N +   LT A                ++    +    E+     G I+   +
Sbjct: 148 AGVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEVSSH--GLIQGRVN 205

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-S 239
            +   +A+ T +   HL     ++  A AK  +F+G  K     LN DD++ ++   + S
Sbjct: 206 ALDFDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHK--ILNVDDAYGKMWAQQWS 263

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A+             A     +    +     E++       +    IG   A N++  
Sbjct: 264 DAIQFSVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGDGTLQCSLIGEFNASNVVAA 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D+D  ++         GR + ++    Q         Y   P +++ A+  
Sbjct: 324 CASLLALGYDLDDLLRVAPKLTAVCGRMELFK----QAGQAACVVDYAHTPDALEKALQA 379

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----L 414
           L     H EG+   + G   +     +     +AE  +   +           A     +
Sbjct: 380 LR---VHCEGKLWCIYGCGGDRDTGKRPLMAQVAEQFADMAVITDDNPRTESAAAIVTDM 436

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + L +    H          +        D+++V  K 
Sbjct: 437 LNGLAKPDAAHVIHDRRRAIQWAMEQSSADDIILVAGKG 475


>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
          Length = 485

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 156/456 (34%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 13  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 72

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 73  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 132

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 133 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 193 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PGLRCRVINLDDDFGRRLAGEEQ---DSEL 248

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+ +         +        +    +G     N+L  +G +  L
Sbjct: 249 ITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGL 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   ++ L       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 309 GYPLGDILRTLPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEALR---PH 361

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
              R + + G   +     +     +AE L+      V ++  +         +  ++  
Sbjct: 362 AAARLLCLFGCGGDRDAGKRPLMAAIAERLA----DGVLVTDDNPRTEASAAIIADIRKG 417

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V +  +       + +S    DVV++  K 
Sbjct: 418 FAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 453


>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Arthrospira platensis NIES-39]
          Length = 498

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/462 (19%), Positives = 166/462 (35%), Gaps = 47/462 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              + G++ +S +  P + F  + G   DG DF   A+  GA   +V+     +      
Sbjct: 21  DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80

Query: 80  SLSIP-VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S +IP V    D+  A  ++A            ++ +TG+ GKTTT  ++   L+++ K 
Sbjct: 81  SDTIPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKP 140

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+          +A                 +     FG+ E+    L + R L  
Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVL-- 198

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T +   HL     +++   AKA +F      G   +N DD + + L A+  
Sbjct: 199 GCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR-- 256

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            LG   ++S+  S  +AD                +     S       +G +   N+L  
Sbjct: 257 -LGGDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG    L  D+   +  L  F    GR +R + +  Q    ++D  Y   P S++   ++
Sbjct: 316 LGAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQNITVIVD--YAHTPDSLE---NL 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------GFHV 411
           L    P   GR I V G     G+  ++    + ++ +  +   V  S           +
Sbjct: 371 LKASRPFIPGRMICVFGC---GGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRIL 427

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +P  +                     GD V++  K 
Sbjct: 428 QDVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKG 469


>gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 507

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 171/462 (37%), Gaps = 47/462 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI------G 79
            +  I+ +S+ +     F AIKG   DGH +I  A++  A +++ +     S        
Sbjct: 27  EIKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADKSFINSLKEK 86

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++   G  +    L  ++         K   IAITG+ GKTTT  +L  AL S K   
Sbjct: 87  YKNVCFVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKAALESAKNKI 146

Query: 138 ACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHL 181
           A IG+  N IG       +                  +V   + E     L   R     
Sbjct: 147 ALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYKKNVSHIVMEASSQALAMDR--CDY 204

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKA 237
           +    A+ T +   HL     ++    AK ++F    +  +K     +N    +F+ +K 
Sbjct: 205 INYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTDYFKEIKN 264

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNM 296
               L +K + ++G ++ AD+  +     S+ S  E   +GK +  V    +G     N 
Sbjct: 265 YIKKLDLKMV-TYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGEFNVVNS 323

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L        D++  IKA+           R+     +    ++   Y+  P S++  
Sbjct: 324 LSVLAYAYEYKLDIEKVIKAIRKVQVSG----RFEIVSGEKCPFIVAVDYSHTPDSLENI 379

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-----SHVWLSGFHV 411
           +    ++ P+   R I V G   +     +     +AE  +  +I              +
Sbjct: 380 LVESRKLKPN---RVIVVFGCGGDRDRKKRPIMASIAEKYADISILTTDNQRTESIEQIM 436

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +++    S +    +  + +F  I+ +  + D+V++  K 
Sbjct: 437 SDIENGFTHSNYKKIIDRKEAIFEAIKEA-KENDIVIIAGKG 477


>gi|304440571|ref|ZP_07400457.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370947|gb|EFM24567.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 510

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 148/354 (41%), Gaps = 20/354 (5%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFG 163
            S   +I ITGS GKT+ K   +  L    +      SYN  +G+   +   +    +  
Sbjct: 158 ESGLKVIGITGSFGKTSVKFFTSTMLDEKFRVQNTPSSYNTPMGLSKVINNELDSSREIF 217

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + ELG    GEI  +  LV+P I VIT I P H+  +  IE I   K E+ E L++ GT 
Sbjct: 218 LAELGAYKPGEIHEVASLVQPDIGVITAIGPTHMQMYKTIENIMKTKYELIEDLDENGTA 277

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGK-S 280
             NYD+ +   L  K+     K    +G       D+  +  +     S   +  + K S
Sbjct: 278 IFNYDNKYVRELADKT----TKKTIRYGTKDFMKLDYYAKDIEVSERGSTFTLVSKEKGS 333

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E     +G H  QN+L ++ I   L   ++     +      E    R      QG   
Sbjct: 334 IECTTKLLGEHSVQNLLASVAIGMELGMSLEEVKDRIEKIESVE---HRLNLIEGQGGVI 390

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+++N+NP   +AA+ VLSQ     +G++I V   M E+GE+ +  +  + + ++   
Sbjct: 391 VIDDAFNSNPVGFRAALKVLSQFK---DGKKIIVTPGMVELGEMEEEENYKVGKEIAKV- 446

Query: 401 ISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  L G          L D+      +    +++     +       DVV+ 
Sbjct: 447 CDYAILVGIKRTEPIRRGLLDSKFDEGRIISVRSLNDATSELGKITAPRDVVLF 500


>gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1058

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 165/458 (36%), Gaps = 53/458 (11%)

Query: 24   QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               V G ++DSR +     F A  G   +G DFI    +K      V       +     
Sbjct: 595  DYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAIVARPEVKIEGA 650

Query: 84   PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 ++   A  ++A          + A+TG+ GKT+  E+     +      A IG+ 
Sbjct: 651  VHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTIAGHKAASIGTL 710

Query: 144  NNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                        M                  D+   IFE     L + R  +   +    
Sbjct: 711  GVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR--SDGAKVIAG 768

Query: 188  VITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T+ +  HL     +E   +AK  +F+  +   GT  +  DD     + A     G+K 
Sbjct: 769  AFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIAHVQKRGLK- 827

Query: 247  IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +   G+   A  +L   +  S+   + + +QG+S ++    IG +   N L+  G+V   
Sbjct: 828  LIDIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGLVLAT 886

Query: 307  TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              D+   + AL++  P  GR +R   + N     +    Y   P  ++AAI  L    PH
Sbjct: 887  GGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYV---DYAHTPDGLRAAIEALR---PH 940

Query: 367  GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA---- 417
             EGR   V G     G+  +    ++ ++ +     HV ++     G     ++      
Sbjct: 941  TEGRLWVVFGA---GGDRDKGKRPEMGKIAANL-ADHVIVTDDNPRGEDAATIRKEILVG 996

Query: 418  --LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L   I        + +F  I+ +   GD+V++  K 
Sbjct: 997  SPLAEEIGGR----KEAIFSAIKRA-EKGDIVLIAGKG 1029


>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
          Length = 485

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 170/457 (37%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IG 132

Query: 142 SYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +  A                 +   +++ + E+  SH  EI     +V   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VEVVDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+      +N DD + + L  +   +   
Sbjct: 191 YALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDE-FIVDNS 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G     D +        +  +++++ + +  +V    +G     N L  +GI   
Sbjct: 250 EIISYGIDSG-DLE----GDYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++  +K +S      G   R+        + +I + Y   P ++   I     I  
Sbjct: 305 IGISMEEILKRVSTIKAAPG---RFEALDCGQNYKVIVD-YAHTPDALVNVIVAARNIKN 360

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
               R I + G   +     +     + E LS      + L+  +            +K 
Sbjct: 361 VN--RIITIFGCGGDRDRTKRPIMAKVVEDLS----DIIILTSDNPRTENPEQIFTDVKK 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +S    +    +       +     D++++  K 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|306820503|ref|ZP_07454136.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551417|gb|EFM39375.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 520

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 150/357 (42%), Gaps = 30/357 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
               T+I +TGS GKTT K++L   L           +YN  +GV +T+   +    D  
Sbjct: 175 MQNLTVIGVTGSYGKTTVKQILGKLLGKDFNVLITPYNYNTTLGVTITIREYLSPLHDVF 234

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+G   +GEI+ +  +V P   VIT+I   HL  F  ++ I   K E+ + +   G +
Sbjct: 235 VCEMGAKGVGEIKEICDIVNPKYGVITSIGEQHLETFLSVDNIIKTKFELADAVPDDGIV 294

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           FLNYD+          +    K I S+  + KNADF     K     S   + + G+ ++
Sbjct: 295 FLNYDNEIIR------NKKVDKNIVSYAVNYKNADFVPYDIKVDENGSIFYLDIDGEKVK 348

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG H   N+   + +   L     T ++ +      E R +  +    + F  +I
Sbjct: 349 FETKIIGLHNVLNIAGCIAVAYKLGVTRQTLVQRVRQIEQVEHRQQVIK----KNFGIII 404

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YN+NP+  K+A+  LS         +I +   M E+GE   S + +    ++     
Sbjct: 405 DDAYNSNPSGAKSALDTLSMFDML----KIVITPGMVELGEKQSSLNREFGRQIAKV-AD 459

Query: 403 HVWLSGF-HVLALKDALP----RSIHVHYSETMDGLFLFI--------QSSLVDGDV 446
           +  L G  H + +++ +         +   + +               ++ L++ D+
Sbjct: 460 YTILVGKNHTIPIQEGIRAENYDEEKLFVVDDIKEALDIAYKLKSEKQKAILLENDL 516


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/483 (18%), Positives = 161/483 (33%), Gaps = 71/483 (14%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G++P   +  I   S  + P   F AI+G   DGHDFI  A+ +GA  VV   ++ A   
Sbjct: 23  GVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFIDQALARGAVAVVAEKEVDARDA 82

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                   V D   AL  L+        ++  ++ +TG+ GKTTT  ++   L    K  
Sbjct: 83  VT----VRVADARNALALLSAVFYGAPSARLVLVGVTGTNGKTTTAALVEHILVKAGKQV 138

Query: 138 ACIGSYNNHIGV-----PLTLAR-----------MPVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+ N          PLT                  V   + E+    L + R     
Sbjct: 139 GVIGTGNFRYVGRRFKNPLTTPESADLQHILRDMATAGVTHVVMEVSSHALAQQR--VAG 196

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT------IFLNYDDSFFELL 235
               +A+ T +   HL     +E     K  +F G    G         +N +D+    L
Sbjct: 197 CAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGTRSVGVREKHMVSVINCNDARGRGL 256

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  G       G ++  D   +      +     +      +       G +  +N
Sbjct: 257 FDTLPVPGR---MGAGFAEACDIYPKGVTSSPDGLAGTIVTPAGPIPFCSPLAGTYNLEN 313

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L   G   +L  +     + +  F    GR +  + A   G F  +D  Y   P +++ 
Sbjct: 314 ILCAAGAGVVLGVEGAAIQEGIETFAGVPGRLE--KVADRMGRFVFVD--YAHTPDALQN 369

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
            +S L +IS    GR   V G     G+  ++    +  + +      V ++  +  +  
Sbjct: 370 VLSALRKISA---GRLFCVFGC---GGDRDRAKRPKMGGIAATI-ADRVVVTSDNPRSED 422

Query: 414 ----LKDALPR-SIHVHYSETMDGLF------LFIQS------------SLVDGDVVVV- 449
               + D +   +        + GL        ++              +   GD +++ 
Sbjct: 423 PEAIIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIRAAVSAAAPGDTILIA 482

Query: 450 -KS 451
            K 
Sbjct: 483 GKG 485


>gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8801]
 gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801]
          Length = 501

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 167/480 (34%), Gaps = 44/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +    DLL  +   +I  +P     Q  V G+  +S +    + F  + G   DG  F  
Sbjct: 1   MVKLQDLLAKVP--TIQEIPPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQFWT 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDDV--LGALNKLAVAARLRSKATIIAITG 115
            A++ GA   ++  +  A       + V   +D+  + A    A       +  +I +TG
Sbjct: 59  SALEAGAVAAIITPEAAAHFPPTPDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIGVTG 118

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VD 159
           + GKTTT  ++   L+  +   A +G+           A                     
Sbjct: 119 TNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAVDAG 178

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    L + R      +  +AV + +   HL     +E+  SAK+ +F     
Sbjct: 179 NHYCVMEVSSHALAQGR--VKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDYL 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD++ + L      L    ++S+  S  +ADF        +      +    
Sbjct: 237 AKRAIINLDDAYGQRL---IQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQ 293

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++      +G     N+L  +  V  L  D++  I  L  F    GR +R + +  Q  
Sbjct: 294 GTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQEI 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D  Y   P S++   ++L    P   G+ I V G   +     +     ++  L+ 
Sbjct: 354 SVIVD--YAHTPDSLE---NLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLAD 408

Query: 399 YNI---SHVWLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++    +         +  +   +P  ++                    GD V++  K 
Sbjct: 409 VSVVTSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKG 468


>gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA1]
 gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA1]
 gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA4]
 gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA1]
 gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA3]
 gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL067PA1]
 gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA1]
 gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA2]
 gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA1]
 gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA3]
 gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA2]
 gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA1]
 gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA2]
          Length = 499

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 156/456 (34%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQR--VDGTCFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 194 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W+     +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 312 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 366 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 421

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 422 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 456


>gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 269

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 115/256 (44%), Gaps = 7/256 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +
Sbjct: 3   MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVADR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKTT K
Sbjct: 63  GASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G++NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGEPARLATAGNFNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETDTLAK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 IAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNA 256
              I      G   +A
Sbjct: 239 GNRIVDFALHGAGSDA 254


>gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
          Length = 489

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 171/475 (36%), Gaps = 52/475 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +LL  I+   +       +N + +DSR+   +  F A  G   D H FI + V++G  +
Sbjct: 4   SELLSKIKAKKLYGTFPEHINKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRM 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +VV+      I  L I    V D L A  +    V      K T   +TG+ GKT+   M
Sbjct: 64  IVVD----HYIEGLDIGQVVVRDTLQAARIFTQHVMDFPSHKLTTYGVTGTNGKTSVATM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH 171
           +     ++    A +G+                P T+         V+       + MS 
Sbjct: 120 IHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMSS 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNY 227
            G     T  V   +A+ T +   HL     +E     KA +F  L    ++     +N 
Sbjct: 180 HGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVNG 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD + + L   S     + + ++G  +N D +    K+        ++    ++E+    
Sbjct: 240 DDDYSKELIIASP----REVITYGIEQNTDIKATNIKESIHGIAFTLETPDGNVEITCPY 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     NML  L  +      +    +A     P EG   R           L+ + Y 
Sbjct: 296 IGRFNIYNMLAALTALWTQGHALSALAEAAQSLPPVEG---RLEVLDRNLPIDLVID-YA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  M   I  L    P   G+ I ++G M   GE   S   ++  V       +V  +
Sbjct: 352 HTPDGMNKLIDALE---PFKRGKMIFLIG-MA--GERDLSKTPEMGAVA--CRADYVIFT 403

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +           AL+     + +V + +  +G+   I  S   GD+VV+  K 
Sbjct: 404 PDNPANDDPRKLTDALESGATHTNYVSFLDRAEGIRHAIAMS-EPGDMVVLASKG 457


>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
 gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
          Length = 485

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/457 (19%), Positives = 172/457 (37%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T   IG
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IG 132

Query: 142 SYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +  A                 +   +++ + E+  SH  EI     +V   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VEVVDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+      +N DD + + L  +   +   
Sbjct: 191 YALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDE-FIVDNS 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G     D +        +  +++++ + +  +V    +G     N L  +GI   
Sbjct: 250 EIISYGID-GGDLE----GDYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++  +K +S      GR +   C   Q +  ++D  Y   P ++   I     I  
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC--GQNYKVIVD--YAHTPDALVNVIVAARNIKN 360

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
               R I + G   +     +     + E LS      + L+  +            +K 
Sbjct: 361 VN--RIITIFGCGGDRDRTKRPIMAKVVEDLS----DIIILTSDNPRTENPEQIFTDVKK 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +S    +    +       +     D++++  K 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 483

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 150/452 (33%), Gaps = 37/452 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR +     F A+ G   DG  FI  A+ +GA  V+   D       L +
Sbjct: 17  DPVITGVTADSRKVTSGSLFVALPGTAADGRAFIPQALSQGAAAVLAPQDTPDGAAPLLV 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 DV  A    A        AT +A+TG+ GKT+         +++    A +G+ 
Sbjct: 77  ---RSGDVRRAYALAARGFYGAQPATCVAVTGTNGKTSVAAFCRQIWAALGIKAASMGTL 133

Query: 144 NN-----HIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                   I   LT              L     +       L  S  G  +     V  
Sbjct: 134 GVVAQSGSITESLTPPGLTSPDAGDAARLLATLAEGGVTHLALEASSHGIDQRRLDGVTL 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG 243
             A  T +   HL     +    +AK  +FE L   G T  LN D   +    A S   G
Sbjct: 194 KAAAFTNLTQDHLDYHGDMAAYRAAKLRLFESLLPRGRTAVLNADSDAYNAFAAASIMSG 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +   G+    D  L + +   E   + + ++G   +V+    G   A N L+  G+ 
Sbjct: 254 LG-VMGVGERGR-DLSLIERRAVPEGQRLILDVRGDRHDVLLPLAGAFQASNALVAAGLC 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D    + AL       GR +R      + +       Y   P  ++   +VL  +
Sbjct: 312 IAAGEDAARVLHALEKITGAAGRLQRVSGGRGEAYV-----DYAHTPDGLE---TVLKAL 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRS 421
            PH  GR I V G   +  +  +     +A  L+   I       S    +         
Sbjct: 364 RPHATGRLIVVFGAGGDRDKGKRPLMGGIAGRLADVAIVTDDNPRSEDPAVIRAQVRAGC 423

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            + + DGDVVVV  K 
Sbjct: 424 PSAREVGDRRAAIREAVAMMRDGDVVVVAGKG 455


>gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 502

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 178/484 (36%), Gaps = 55/484 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL+ +            + G+S +SR+I P + F A+ G   DG  +I  A+  GA 
Sbjct: 3   LSDLLKNL-ADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGAR 61

Query: 67  LVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +++     + A +  L  P+  V++    L K A     +    I A+TG+ GKT+T + 
Sbjct: 62  VILTDMRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTDF 121

Query: 126 LTIALSSIKKTYACIGS----------YNNHIGVPLTLAR-------------MPVDVDF 162
           L    + +    + IG+           +  I     L                   V  
Sbjct: 122 LRQLWTRVTWQASSIGTLGVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDAGVTH 181

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG 221
              E     L + R     +  HIA  T +   HL + + +E    AK+ +F + L   G
Sbjct: 182 LALEASSHGLVQQRL--DGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMHAG 239

Query: 222 TIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              +N DD +   L     A G      I +FG + +ADFQ+ K         M V+  G
Sbjct: 240 AAIINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDNILDMSVKHDG 299

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           KS  +     G   A N L    +  +    +  ++  L+   P  G   R +       
Sbjct: 300 KSWHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPG---RMQTVTGHPQ 356

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I   +   P +++AA+  L    P    +   + G   +     ++    +A+  + 
Sbjct: 357 GAQIVVDFAHTPDALRAALEALR---PEVSHKLYVLFGCGGDRDPSKRALMGAIADDAA- 412

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +           A+  A P+SI +   +T           LV+GDV+++
Sbjct: 413 ---DVVIVTDDNPRSEDPASIRSAIMAASPKSIEIFPRDT---AIKTALEQLVEGDVLLI 466

Query: 450 --KS 451
             K 
Sbjct: 467 AGKG 470


>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
 gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
          Length = 487

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 156/456 (34%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PGLRCRVVNLDDDFGRRLAGEEQ---YSEL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+ +         +        +    +G     N+L  +G +  L
Sbjct: 251 ITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   ++ L       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 311 GYPLGDILRTLPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
              R + + G   +     +     +AE L+      V ++  +         +  ++  
Sbjct: 364 AAARLLCLFGCGGDRDAGKRPLMAAIAERLA----DGVLVTDDNPRTEASAAIIADIRKG 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V +  +       + +S    DVV++  K 
Sbjct: 420 FAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella woodyi ATCC 51908]
 gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC
           51908]
          Length = 502

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 178/480 (37%), Gaps = 54/480 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +            VN +S+DSR +   + F A+ G   DG D+I  A + GA + +
Sbjct: 2   LLKDLLAPWFHYSGSESVNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSL 61

Query: 70  VNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+TD     G      S  I  F +   L AL           +  ++ +TG+ GKT+  
Sbjct: 62  VHTDNPEMHGKVLTSNSTQIFFFQLSRQLSALAA-QAYPLPVERLKLVGVTGTNGKTSIT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFG--IFELGM 169
           +++   L  + K  A +G+  N +   L             +A++    + G  +  + +
Sbjct: 121 QLMAQLLVCLGKQPAVMGTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEV 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G I+     V   +A+ T ++  HL     ++    AK  +F+      +  +N DD
Sbjct: 181 SSHGLIQARVDAVPFDLAIFTNLSRDHLDYHGTMQAYGEAKFRLFKF-PSLKSGVINLDD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSME 282
              +   A+S +     +  +  + ++D          +     ++    ++        
Sbjct: 240 DLGKQWLAQSDSA---KLIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRAKLVWPEGCGN 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L  L  +  L  D++  + A+   +   GR +++     +   TL+
Sbjct: 297 IDSPLLGAFNLSNLLAALAGLYQLGFDMNALLNAVPKLNAVAGRMEQFTT---ENGITLV 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+  L     H EG    + G   +  +  +      AE  +     
Sbjct: 354 VD-YAHTPDAIEQALKALRG---HCEGELWCLFGCGGDRDKGKRPLMAQSAEAYA----D 405

Query: 403 HVWLSGFHVLALK---------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + ++  +  +             L R          +     + ++   GD++++  K 
Sbjct: 406 RIMVTSDNARSESPDEIINDVLAGLNRPERAVTQVDRELAIREVLAAAKPGDLILLAGKG 465


>gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
 gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
          Length = 488

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA1]
          Length = 499

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 156/456 (34%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQR--VDGTCFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 194 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W+     +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 312 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 366 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 421

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 422 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 456


>gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2846]
          Length = 488

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          GR + 
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEM 341

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +         ++   Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 342 IQYP----NKPIVIVDYAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
          Length = 488

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 161/488 (32%), Gaps = 65/488 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELKD-----------DVELHSMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  IHSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRSAVMGTIGNGLLGQIIEAKNTTGSAVEIQSSLSNFKQA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFASIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQS 270
            T    +N DD        +              S NADF        +        + +
Sbjct: 231 -TQIKVINADDEIGHQWLTELPDA-------IAVSMNADFKVGLHQWMKAINIHYHFKGA 282

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  +    +  +    IG     N+L+ +  +      ++  +          G   R 
Sbjct: 283 DITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---RM 339

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T+I + Y   P +++ A+    +   H +G    + G   +     +    
Sbjct: 340 EMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLMA 395

Query: 391 DLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +AE  +   I           +     +         V           F   S V+ D
Sbjct: 396 QVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEND 455

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 456 VILIAGKG 463


>gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
 gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
          Length = 493

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 163/459 (35%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A+++GA   +     V + G++  
Sbjct: 22  SVLVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A 
Sbjct: 82  IDDVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TL+ +      +   E+    L + R     + 
Sbjct: 142 MGTTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGR--VKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F    +     +N DD       ++     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLGLFTQ-HQCKRAIINVDDEVGHQWASQLSNAI 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++    + ++A     +         ++   +  S E+    IG   A N+++    +
Sbjct: 259 AISLKPNTEFESA-IWATEVSYAESGITIKFDGKFGSGELHAPLIGEFNATNLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +    ++      P  GR + ++              Y   P +++ A+  L   
Sbjct: 318 LSLGIEKQALLETAGQLQPVLGRMELFQTEDRAKVVV----DYAHTPDALEKALQALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
             H EG+  A+ G   +     +    ++AE L       V L+  +  +         +
Sbjct: 372 -VHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLG----DRVVLTDDNPRSEDPVQIVKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKG 465


>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
 gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
          Length = 511

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 136/395 (34%), Gaps = 39/395 (9%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           F  L + I     +G  P   + G+  DSR   P   F A+ G   DGH          A
Sbjct: 3   FDQLTRLIGPESLLGHAPTAELTGVCCDSRQAGPGMVFVAVVGHSADGHA-----YVAAA 57

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTK 123
                   +V       I    V D   AL+ L    A R   +  ++ +TG+ GKTT  
Sbjct: 58  AAAGATAAVVQRPVEADIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTIC 117

Query: 124 EMLTIALSSIKKT--YACIGSYNNHIGVPL------------TLARMPVD-VDFGIFELG 168
            +    ++    T     + +    +  P             TLA M  + V+    E+ 
Sbjct: 118 HLARAIMAQRWPTGMIGTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG------- 221
              L + R      R  + + T ++  HL     + +   AK  +F  L           
Sbjct: 178 SHALDQHR--ADHCRFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRP 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD    +L  ++   G+  + ++G +  AD   R      +   + +   G S+
Sbjct: 236 VSVICLDDDHGRVLADQARGTGLA-LLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSL 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E     +G +  QN++    +   L    +     L       GR +R            
Sbjct: 295 EFHSRLVGRYNLQNIVGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRV---PGPDRSPA 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +   Y  +P ++ AA++VL    P   GR I V G
Sbjct: 352 VFVDYAHSPEAIAAALAVLR---PLCAGRLICVFG 383


>gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
 gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
          Length = 505

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/478 (18%), Positives = 171/478 (35%), Gaps = 61/478 (12%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G  +DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKYVKGSL-----NLEISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDLDFYSPN--VTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARMPVD-VDFGI 164
             + + L         + +                        +   L+ M  + V + +
Sbjct: 127 YYIYLLLKKRGIKVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAV 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI 223
            E     L         V    AV T I   HL     I    + K  +F+ +    G  
Sbjct: 187 LESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQSVSDDAGFG 246

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD +    K       IK  +++  K+  ADF +    + ++ +  E   +G    
Sbjct: 247 VINLDDVYSSDFKN-----AIKKSFTYSLKNSQADFFVSFIDEKTDSTRFEFYYKGIKYF 301

Query: 283 VVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              + +G    +N++  L  +  +L  D+   +  L      +GR         Q F  +
Sbjct: 302 ANVNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMDSINL--GQNFSVI 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y   P +      +  + + +   R I+V G   E     +     ++++ S    
Sbjct: 360 ID--YAHTPGAFSKLFPIFKRFAIN---RLISVFGSAGERDVAKRFLQGQISDIYS---- 410

Query: 402 SHVWLSGFH------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNRDLFFIPDRRQAIEKAISLARAGDLV 468


>gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
 gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
          Length = 508

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 172/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          + G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKCVKGSL-----DLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + D+        +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDLDFYSSD--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + + L         I +                        +   L  M   +V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L   V    AV T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLID-VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDFYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
               + +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 FANVNLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
          Length = 493

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/456 (18%), Positives = 156/456 (34%), Gaps = 42/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79
           Q  + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +          +G
Sbjct: 20  QATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAAGAQLAATELG 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +    +   DD   AL + A         T++A+TG+ GKT+    +    + +      
Sbjct: 80  ASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQIWTLLGHEAIN 139

Query: 140 IGSYN----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+            +    P+TL R   +     V     E     L + R     V  
Sbjct: 140 LGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSHGLDQRRL--DGVTL 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL   +  E+  +AKA +F   L +  T  +N D      + A + A  
Sbjct: 198 AAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDMAAIAEARN 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G+    D  L   +  S    +     G         IG   A+N+++   +V
Sbjct: 258 C-PVITVGRDSG-DLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQAENVMLAAALV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       L       G   R + A  +     +   Y   P ++  A+  L   
Sbjct: 316 IACGEDPQHVFDTLEHLSTVRG---RMQLAGTRDNGATVFVDYAHTPDAIATALKALR-- 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
            PH  GR IA++G   +     +          +  N   V+++  +  +          
Sbjct: 371 -PHVVGRLIAIVGAGGDRDATKRPLMGQ----AAAENADVVFVTDDNPRSEDPASIRAAV 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L  +             L    +L  GD +++  K 
Sbjct: 426 LLGAPDAIEVGDRAEAILRGVDALGPGDALLIAGKG 461


>gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
 gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
          Length = 486

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 140/399 (35%), Gaps = 32/399 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR +     F A+ G   DG DF   AV KGA  ++     +  +G   +
Sbjct: 16  DPVIAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEGGLEGLG---V 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV   +D   A    A A   +  A  +A+TG+ GKT+         + +    A +G+ 
Sbjct: 73  PVVRSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMGTL 132

Query: 144 NNHIGVP------LTLARMPVDVDFGIFEL--------------GMSHLGEIRFLTHLVR 183
              +  P      LT   +       + E+                S  G  +     V+
Sbjct: 133 GVVVSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDGVK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
              A  T     HL     +E   +AK  +F+ L   G    LN D   F    A +   
Sbjct: 193 LSAAGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAVTS 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G ++++S G+      +L           + V+ +G    +     G   A N+L+  G+
Sbjct: 253 G-QSVFSVGEEGQG-LRLLSRTPTPAGQDLVVEAEGVVHHLKLPLAGAFQASNVLVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D    +KAL       GR +R       G   +    Y   P  ++  +  L  
Sbjct: 311 CIAAGEDSAKVLKALETLEGAAGRLQRVGRGPKGGEAYV---DYAHTPDGLQTVLEALR- 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             PH  G+ IAV G   +     +     +   L+   I
Sbjct: 367 --PHTAGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403


>gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae Rd KW20]
 gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
 gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae Rd KW20]
 gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
          Length = 488

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 166/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA        +  T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSAFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi JD1]
          Length = 508

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 172/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
 gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
          Length = 484

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 173/472 (36%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I   + K
Sbjct: 6   MKRINQILKFLDIKTLSQN-NFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 65  GVSLVLTDSHQFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                       + E+ 
Sbjct: 121 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQNLVMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 181 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 237

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   + A     + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 238 DEYGQRLCNMTQA----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 294 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++ A+  L+  +P+       + G         +     +AE  +   I     
Sbjct: 348 AHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDTSKRPIMAQIAEEYASKIIITEDN 404

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++          +  + +    F   +   GD++++  K 
Sbjct: 405 NRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 456


>gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 508

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 172/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L   V    AV T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLID-VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. D2]
 gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
 gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
          Length = 482

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 183/476 (38%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KG
Sbjct: 1   MLLNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  ++   + +       I    V D   A+ K+         SK  ++ +TG+ GKTT 
Sbjct: 61  AIAILC--EDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLA----RMPVDVDFGIFEL 167
             +L             I +  N+I             P+TL     RM  +    +F  
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFME 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + ++ L +    + T +   HL     +E    AK + F+ L K      N 
Sbjct: 179 VSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNL 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++     +     +Y++     +DF+ R  +   E   ++      + E+    
Sbjct: 238 DDKNGLVMTQNIRS----KVYTYSLRSLSDFKGRVLESHFEGMLLDFN----NHELAVQF 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  + ALS  HP  GR    R    QG   ++D  Y 
Sbjct: 290 IGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVD--YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +   G+G+ I V+G     G   +     +A+  +  +   +  S
Sbjct: 346 HTPDALINVLNAIHGV-LEGKGKVITVVGA---GGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 408 G-FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSL---VDGDVVVV--KS 451
                   +D +   +    +E M            I+++      GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
 gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
          Length = 488

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus
           influenzae F3031]
 gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae F3031]
          Length = 488

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L   +  +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GAGFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          GR + 
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEM 341

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +         ++   Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 342 IQYP----NKPIVIVDYAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi ATCC BAA-1116]
 gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 159/462 (34%), Gaps = 52/462 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR +     F AI G   DG  FI  A+++GA  V+       + G++  
Sbjct: 22  SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TL+ +      +   E+     G I+     + 
Sbjct: 142 MGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSH--GLIQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SH 240
               V T ++  HL     +EE A+AK  +F    + G   +N DD        +   + 
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLNNAL 258

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ +K    F +S                  +E   +     +    IG   A N+++  
Sbjct: 259 AVSLKPTTEFSQS----VYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAF 314

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L       +       P  GR + ++   N          Y   P +++ A+  L
Sbjct: 315 TTLLSLGFSKQDLLATAGQLQPVLGRMELFQANDNAKVVV----DYAHTPDALEKALQAL 370

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H  G   A+LG   +     +    ++AE L       V L+  +         +
Sbjct: 371 R---VHCHGELWAILGCGGDRDAGKRPMMAEIAERLG----DKVVLTDDNPRSEDPALIM 423

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L +               +        D++++  K 
Sbjct: 424 KGMLAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465


>gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 483

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 175/451 (38%), Gaps = 48/451 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  DSR I   + F A++G   DGH++I  AV+ GA  V+V+  + A+     +    
Sbjct: 23  TGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVEAAFP---VKYIW 79

Query: 88  VDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + D+   L           + K  II ITG+ GKTTT  ++   L S     A IG+   
Sbjct: 80  IKDLRKKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGS--NKTARIGTVEY 137

Query: 146 HIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            IG  +  A                 +   +++ + E+    L   R    ++   +++ 
Sbjct: 138 KIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGR--VDMLEFDVSMF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKTI 247
           T +   HL     +E+   AK ++F  ++K       +N DD + + L ++         
Sbjct: 196 TNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRLSSEFGG------ 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S+G       + R  +   +   +E+ +   S       +G +   N+L  + I  +L 
Sbjct: 250 ISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNVLGAISIALLLG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            + +  ++ +       G   RY        FT+I + Y+    +++  +  ++++    
Sbjct: 310 IEKEIVLERIKELKGAPG---RYELVNCGQNFTVIVD-YSHTSDALENILKSINELK--- 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH--VLALKDALPRSI 422
           +G+ I V G   +     +    ++AE LS   I    +      H  V  + + +    
Sbjct: 363 KGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGMKGKN 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H+   E  D           + D++++  K 
Sbjct: 423 HI-VEEDRDHAISKAVELAEEKDIILIAGKG 452


>gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
 gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
          Length = 488

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 166/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L   +  +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 485

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 165/452 (36%), Gaps = 50/452 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +        + +  
Sbjct: 22  DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHKVSYVLIDE 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNH 146
           +   LG L         + K  II +TG+ GKT++  M+   +     T    IG+    
Sbjct: 82  IRHKLGYLASNFYEW-PQRKLKIIGVTGTNGKTSSTYMIEKLM---GDTPITRIGTIEYK 137

Query: 147 IGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           IG  +  A                 +   +++ + E+  SH  EI     ++    A+ T
Sbjct: 138 IGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VDVLDFDYALFT 195

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E    AK ++F  L+ T     N DD + + L  +        I S+
Sbjct: 196 NLTQDHLDYHVTMENYFQAKRKLFLKLKDTNNSVFNIDDKYGKKLYDE-FIEDNPEIISY 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G     D +        +  +++++ + K  +V    +G     N L  + I   +    
Sbjct: 255 GID-GGDLEGEYL----DDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAIAVKMGIKW 309

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  ++ +S      GR +   C   Q +  ++D  Y   P ++   I     I      R
Sbjct: 310 EDILERISNIKAAPGRFEALNC--GQDYKVIVD--YAHTPDALVNVIVAARNIR--NGNR 363

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421
            I + G   +     +      AE LS      V L+  +            +K    ++
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLS----DIVILTSDNPRTESPEQIFADVKTGFAKN 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +    +       +     D++++  K 
Sbjct: 420 DDYFFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
 gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
          Length = 487

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 156/456 (34%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCCIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PGLRCRVINLDDDFGRRLAGEEQ---DSEL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+ +         +        +    +G     N+L  +G +  L
Sbjct: 251 ITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   ++ L       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 311 GYPLGDILRTLPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
              R + + G   +     +     +AE L+      V ++  +         +  ++  
Sbjct: 364 AAARLLCLFGCGGDRDAGKRPLMAAIAERLA----DGVLVTDDNPRTEASAAIIADIRKG 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V +  +       + +S    DVV++  K 
Sbjct: 420 FAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10
           bacterium 'Dutch sediment']
          Length = 504

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 139/421 (33%), Gaps = 37/421 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+   +   +       V+ I  DSR + P + F  I G   DGHDFI  A   G
Sbjct: 1   MQLFDLINGTEHQVLRGSVDLEVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFIQAAWAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A   +V    +         V  V +   +L               +++ +TG+ GKTTT
Sbjct: 61  AVAALVERTDLTEAALQGGTVVKVANTRQSLAAVACRFYGHPSRSLSMVGVTGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVD---------------VDFGIFE 166
             ++   L         IG+       + L  AR   +                D  + E
Sbjct: 121 TYLVESVLRCAGHQVGLIGTIGYRCNELELEAARTTPESCDLQALLERMARLRADSVVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L   R         +AV T +   HL     +E   SAK  +FEGL         
Sbjct: 181 VSSHALALHR--VDGCEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGLGVGSTKTTE 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD   +L    +        YS+     AD  +   K   +     +Q    +
Sbjct: 239 KAAVVNLDDPAADLFLGATRVRR----YSYSVEGPADLSVADVKMGPDGIRCRLQTPWGT 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    +G +   N+L        L AD+      ++  H   GR +R       G   
Sbjct: 295 TAIRSPLLGRYNLSNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVET----GQAF 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +   Y   P +++  + +  Q      GR I + G   E     +    + A  L+ + 
Sbjct: 351 SVMVDYAHTPDALRRVLRMARQC---CPGRLIVLFGCGGERDRGKRPLMGEAALELADFT 407

Query: 401 I 401
           +
Sbjct: 408 V 408


>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
 gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 497

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 88/423 (20%), Positives = 154/423 (36%), Gaps = 35/423 (8%)

Query: 5   WTFHDL--LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +L    AI            V  + ++S    P   F  + G   +G +F   A+ 
Sbjct: 1   MNLRELLTAAAITPGFEHPALNQEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFWPSALA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
            GA   VV+       G     V  V D+  A  +LA           +++ +TG+ GKT
Sbjct: 61  AGAIAAVVSPQAKPREGEAC--VIVVPDIERACGRLAAAFYNYPSQHLSLLGVTGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGI 164
           TT  ++   L+ +    A +G+  +       +A                       FG+
Sbjct: 119 TTTHLVEHLLNRVGYPTALLGTLYSRWPGHCEVASHTTPFAVTLQEQLAAAVDAGCRFGV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L + R      +  +A  T +   HL     +E+  +AKA++F      G   
Sbjct: 179 MEVSSHALAQDR--VWGCQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTADYLKGRAI 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F + L  +   L     +++G SK+ADF+       S      V     S  + 
Sbjct: 237 LNGDDPFGQRLAQQ---LPRDRYWTYGLSKDADFRAENLNYRSNGVTGAVHTPLGSGTLD 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  + + + +   ++  + AL  F    GR ++ R    Q    ++D 
Sbjct: 294 SPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVVVD- 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++   ++L    P   G+ I V G     G+  +S    +  + +      V
Sbjct: 353 -YAHTPDSLE---NLLRAARPFIPGKLICVFGC---GGDRDRSKRPQMGAIAARLADQVV 405

Query: 405 WLS 407
             S
Sbjct: 406 VTS 408


>gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 10329]
          Length = 493

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 161/459 (35%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++  
Sbjct: 22  SVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  IDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TLA +      +   E+     G I+     + 
Sbjct: 142 MGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSH--GLIQGRVKSLS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +      +N DD        +     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCD-QAIINVDDEVGAAWAKQLTNAI 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++    + ++A     +         +    Q     +    IG   A N+++    +
Sbjct: 259 AVSLAPTTEFEHA-LWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    +   +   P  GR + ++              Y   P +++ A+  L   
Sbjct: 318 LSLGFDKSDLLATAAQLQPVLGRMELFQAENRAKVVV----DYAHTPDALEKALQALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
             H +G+  A+ G   +     +    ++AE L       V L+  +  +         +
Sbjct: 372 -VHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLG----DKVVLTDDNPRSEDPVLIVKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKG 465


>gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
 gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
          Length = 506

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 173/479 (36%), Gaps = 52/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLGAAQPDRTAD--VTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  V+D    + +LA     R       I ITG+ GKTTT  
Sbjct: 75  AVLTDPGGAERAAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L + K T   IG+    IG     +    P   D       M   G     +   
Sbjct: 135 LVEGGLKTAKAT-GLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 193

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           +AV T ++P H+   SG+E+   AKA++F    ++    +N DD 
Sbjct: 194 SHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFTP-ARSRLGIVNADDE 252

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           +   L  ++       + ++      +AD++    +     S   V   +G  +      
Sbjct: 253 YGRRLAEEATV----PVVTYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARSPL 308

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  ++    D  TA   ++      GR +R     + G   L    Y 
Sbjct: 309 PGPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERV----DAGQPYLAVVDYA 364

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++++ +  L +++   +GR   VLG     G+  ++    +   ++    + V  S
Sbjct: 365 HKTDAVESVLRALRKVT---KGRVHVVLGC---GGDRDRTKREPMGAAVARLADTAVLTS 418

Query: 408 G----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   LA+  A+ +            V   E          +    GD V+V  K 
Sbjct: 419 DNPRSEDPLAILAAMLQGAASVPAHERGEVLLFEERAAAIAAAVARARPGDTVLVAGKG 477


>gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
 gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
          Length = 514

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 157/464 (33%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G    H DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPLRI 92

Query: 86  FGVDDVL---GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VDD+    G L     A        +I +TG+ GKT+  + +  ALS   +  A +G+
Sbjct: 93  LPVDDLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       +  E+    L + R      R  I
Sbjct: 153 LGTGFVDALVATGFTTPDAIQLQHSLAELHRAGARAVAMEVSSHGLEQGR--ADGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     + E   AKA +F G        +N DD+    L     A GI+ 
Sbjct: 211 ALFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGVRLLTGLRA-GIEA 268

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           I  +G    A          +    +     +  ++        V    +G     N L 
Sbjct: 269 IE-YGIDGEAAAQRGAGHWLRATNVRVHRTGTTFDIDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG++ +       AI  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    GR  AV G   +     +     +AE L+     HV L+  +  +     
Sbjct: 384 ALAPITEARAGRLWAVFGCGGDRDPGKRPQMGAIAERLAQ----HVVLTSDNPRSEDPQQ 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DV+VV  K 
Sbjct: 440 ILDMIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483


>gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Haemophilus influenzae 10810]
          Length = 488

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 488

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 165/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFRQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQIAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 493

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 166/460 (36%), Gaps = 48/460 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++  
Sbjct: 22  SVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  IDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TLA +      +   E+     G I+     + 
Sbjct: 142 MGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSH--GLIQGRVKSLS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F    +     +N DD        +     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCAQAIINVDDEVGAAWAKQLTNAI 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++    + ++A     +         +    Q     +    IG   A N+++    +
Sbjct: 259 AVSLAPTTEFEHA-LWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    +   +   P  GR + ++              Y   P +++ A+  L   
Sbjct: 318 LSLGFDKSDLLATAAQLQPVLGRMELFQAEHRAKVVV----DYAHTPDALEKALQALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------- 413
             H +G+  A+ G   +     +    ++AE L       V L+  +  +          
Sbjct: 372 -VHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLG----DKVVLTDDNPRSEDPVLIVKDM 426

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      +  +   +    LF  ++++    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALFYALENA-APQDIILLAGKG 465


>gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 497

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 180/486 (37%), Gaps = 68/486 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             DL +A  G  +G           + +  DSR + P + F  + G H+DGH FI+  ++
Sbjct: 9   LDDLKRA--GFLLGWGGDWNDLKETSRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLR 66

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
            G    ++                 V DV  A+  LA   A     +  ++A+TG+ GK+
Sbjct: 67  LGVAGFMIERPTDGLDNW-----IQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGI 164
           T+  M+   LS+       IG+   H G   T+A                 +       +
Sbjct: 122 TSSYMIRSVLSACGIKTGLIGTVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACV 181

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTI 223
            E     L + R          A+ T ++P HL     +EE  +AK+ +F E L+    I
Sbjct: 182 MECSSHGLVQGRI--SGSTYDGALFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVI 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSM 281
            +N  D + + L A+  +       ++G    AD +++  +    +  S  ++Q+ G+ +
Sbjct: 240 SVNGCDPWGQKLAARFPSS-----LTWGLGDGADVRVKADRLTMKAGGSDFDLQVDGQFL 294

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G    +N L    +   L    +  +K L       GR +R   +      T
Sbjct: 295 GRVALPMTGRFNVENALGAASLCIGLGCSPEAVVKGLETMPQVPGRMERINLS---NGVT 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + +     ++   ++ L  ++     R I+V G   E    ++    +L ++     
Sbjct: 352 VIVD-FAHTEIALTNLLATLRPLAK----RLISVFGHGGERFAGARP---ELGKIAGQT- 402

Query: 401 ISHVWL---------SGFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVV 448
              V +               A+   L       +S  +   D +F  +  +   GDVVV
Sbjct: 403 ADRVIVTMDNPRNEDPAEIARAIVAGL-EGGKASFSTVLSRRDAVFAALDEA-ERGDVVV 460

Query: 449 V--KSS 452
           +  K +
Sbjct: 461 ISGKGA 466


>gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 486

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 162/455 (35%), Gaps = 54/455 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +  DSR + P + F A+ G    G+ FI  A+ +GA  VV +             V  
Sbjct: 15  RQVRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFVVASEPAGQDR------VLH 68

Query: 88  VDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            ++   AL +LA A     R    ++ +TG+ GKTTT  +L    +SI      +G+ N 
Sbjct: 69  HENPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTVNY 128

Query: 146 HIGV---------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                                 LARM       +     SH  + + L  +   H+AV T
Sbjct: 129 RWPGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAGI-DIHVAVFT 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFELLKAKSHALGIKTIY 248
            ++  HL   + IE+   AK ++F        +   +N DD     L  ++       + 
Sbjct: 188 GLSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGEA-----PRVM 242

Query: 249 SFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +G  KN   + Q    +  +    ME   QG+S  +     G H AQN+L   G    L
Sbjct: 243 GYGLQKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQGAGICL 302

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +     L    P  GR ++            I   Y   P +++     L ++S  
Sbjct: 303 GLEPEH-FDCLKDLGPIPGRLEKVPAPEGIN----IYVDYAHTPDALENVCLALKELSFS 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------GFHVLALKDAL 418
               R+AVL      G+  +    ++A  ++ +  +    S        G  +  +   L
Sbjct: 358 ----RLAVL--FGCGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGEIIKDILPGL 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                V              S L  G+ ++V  K 
Sbjct: 412 AGHPCVEVEPDRRQAIQKAVSLLAPGEALLVAGKG 446


>gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
 gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
          Length = 481

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 169/484 (34%), Gaps = 69/484 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57
           + T  +L     G      P   V G++ DSR + P   F AI G        +DGHD+I
Sbjct: 1   MPTLQELF----GLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYI 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITG 115
             A+Q GA  VV   ++      LS+P   V D   AL  L+         +  ++ +TG
Sbjct: 57  PQAIQNGAVAVVGMRELH-----LSVPYLRVADARAALADLSAAFWGYPAQRLELLGVTG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLAR-MP 157
           S GKTT   +L   L   +     + +    I                  V   L R + 
Sbjct: 112 SKGKTTVAVLLHHLLQRARPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHRFVQ 171

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                 + E+    L         +   + V T +   HL     +E   + K ++   L
Sbjct: 172 AGCRQAVLEVSSHALAL--ERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKL---L 226

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           E++    +N D+ + + L+ +         +S+G  +  D+Q     + S     EV   
Sbjct: 227 ERSRFAVVNSDNPWTQTLRGRPQT------WSYG--QQGDWQAHNLVESSTGLEFEVVSP 278

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                V    +G   A+N L  +   + +   V+   + L+ F    GR +  + A  + 
Sbjct: 279 MGRFAVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGRMQLVQAAPFR- 337

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +   +    AS++AA+  L    P  +GR + V+G     G    S  + + +V +
Sbjct: 338 ----VVVDFAHTGASLEAALQTLR---PTTQGRLLVVIGA---AGNQDPSRRVGIGQVAA 387

Query: 398 LYNISHVWLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 ++    H        + A+  A                  +       GD ++ 
Sbjct: 388 RLADLAIFTEEDHRTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLF 447

Query: 450 --KS 451
             K 
Sbjct: 448 SGKG 451


>gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
          Length = 499

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 165/461 (35%), Gaps = 47/461 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  +  DSRS+   + F A  G   DG  FI  A+++GA  V+          + S+P  
Sbjct: 16  VRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWEEHGFKWNPTWSVPNL 75

Query: 87  GVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+     L    V  +   K  ++ ITG+ GKT+    L  +  ++ +  A IG+  
Sbjct: 76  AVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSALIGTLG 135

Query: 145 NHIGVPL-TLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N     L   A    D                   + E+    L + R   + V   +A+
Sbjct: 136 NGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGR--VNGVHFDVAL 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T +   HL     ++  A+AK  +F+         LN DD F   L  +     ++ + 
Sbjct: 194 LTNLTRDHLDFHGDMQSYAAAKKRLFDWASLK-YAVLNLDDMFGAELAEQLQDASVE-VI 251

Query: 249 SFGKSKNADFQLRKW----------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +G + ++     +           +  ++   +++     +  +    IG   A N+L 
Sbjct: 252 GYGLNDDSLKMAERLGIRMVYGSLTQMDAQGLTLQLHTSWGAAALCSRLIGSFNASNLLG 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L ++      +D A + L +     G   R +    +G  T++ + Y   P ++   ++
Sbjct: 312 ALAVLLASEVRIDDAARELGLQKAVAG---RMQTLGGKGLPTVVVD-YAHTPDALDKVLT 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            + +++    G+ I V G     G+  +     +  V S      +  S          +
Sbjct: 368 TVREVTESAGGKVICVFGC---GGDRDRGKRPMMGTVASKLADVRIITSDNPRSEEAAEI 424

Query: 415 KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +   Y   E          ++    D V++  K 
Sbjct: 425 VSEIAAGMQGEYQVIEDRAKAITLAIANARHIDTVLLAGKG 465


>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 539

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 156/417 (37%), Gaps = 35/417 (8%)

Query: 1   MNPL--WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P    T  +LL    +   ++       + GI  DSR + P + F  +KG   DG++F
Sbjct: 2   MEPTYRMTLAELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEF 61

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              A++KGA  +V +++++ + G  +  V    ++L +    A          ++ ITG+
Sbjct: 62  AHQAIEKGAVAIVSSSEVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGT 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-----------------ARMPVD 159
            GK TT  ++     ++      +G+ N +I     L                 + +   
Sbjct: 122 NGKATTSYLIRSIYEAMGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVHHG 181

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-- 217
            D  I E+    +   R     V   +AV T +           +E   A  ++F  +  
Sbjct: 182 TDACIMEVSSHAMHLGR--CKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKMVN 239

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQL 276
            +     +N DD   +     +       + ++   +KNAD    + +    +S + V+ 
Sbjct: 240 PEKHRKIVNIDDPQSDYFV--TQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVRT 297

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              ++E+    +G H   N+L  + +   + A ++  ++ +       G   R      +
Sbjct: 298 PRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPG---RCELIDEE 354

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             F +I + +   P  +   +  + +  P    R I VLG   +  +  +     +A
Sbjct: 355 QAFAVIVD-HANTPDGLSRLLDTVRECGP---RRIITVLGSQGDRDKAKRPLMAKIA 407


>gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi 80a]
          Length = 508

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 172/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLV 468


>gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
 gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
          Length = 488

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 161/488 (32%), Gaps = 65/488 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +T
Sbjct: 53  LHSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGLRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQS 270
            T    +N DD        K              S NADF        +        + +
Sbjct: 231 -TQIKVINADDEIGYQWLTKLPDA-------IAVSMNADFKVGSHQWMKAINIHYHFKGA 282

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  +    +  +    IG     N+L+ +  +      ++  +          G   R 
Sbjct: 283 DITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---RM 339

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T+I + Y   P +++ A+    +   H +G    + G   +     +    
Sbjct: 340 EMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLMA 395

Query: 391 DLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +AE  +   I           +     +         V           F   S V+ D
Sbjct: 396 QVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEND 455

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 456 VILIAGKG 463


>gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
 gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
          Length = 480

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/459 (21%), Positives = 177/459 (38%), Gaps = 52/459 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++   + FF +KG + D +DFI  A+ +   LV+ +    A+I     
Sbjct: 11  QYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSATIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V+DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -IIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTI 126

Query: 144 NNHIGVPLTLAR--------------------MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
              I     L                         ++++  FE     L + R     ++
Sbjct: 127 GVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQARL--GEIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +IA  T+ +  HL      E    AK ++F E L + G   LN D    E +K      
Sbjct: 185 VNIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIEFIKDYLLNH 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK I + G  K  D Q+ K     +   +      +        IG   A N+L+    
Sbjct: 245 NIKFI-TVG--KKGDVQITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASNLLIAALS 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +  D +  ++ L+   P +GR +R          T I   Y+  P +++ A++ L  
Sbjct: 302 IHYIGCDFNKIVEILTQVKPVKGRMERI-------DNTNIFVDYSHTPDALEKALTELKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I    + + I V G      +  +S    +A  L+      V ++  +       L R+ 
Sbjct: 355 IK-LRDSKLIVVFGCGGNRDKTKRSLMGQIAAKLA----DTVIITDDNPRHEDPKLIRAE 409

Query: 423 HVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451
            +   E          +    +  ++L   D++++  K 
Sbjct: 410 IISCIEKADYMEIANREEAIKYGINNLKQDDILLIAGKG 448


>gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 512

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 94/453 (20%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G V G++ DSR + P  AF A+ G   DG +F+  A+++GA LVV   ++  +      P
Sbjct: 42  GRVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVPEA------P 95

Query: 85  VFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D     A    A       +  +  +TG+ GKTTT   L   L+       C   
Sbjct: 96  VAVVPDARAALAALACAFHGHPSRRMEVYGVTGTNGKTTTCYALHAVLAGAFGEERCGLM 155

Query: 143 YNNHIGVPLT----LARMPVDVDFGIFELGMSHLGEIR------------FLTHLVRPHI 186
               +         +   P   +      GM   G  R                 +R   
Sbjct: 156 TTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEGIRFAG 215

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T ++  HL     +EE    K  +F  L   G    N DD++   L  +        
Sbjct: 216 AVFTNLSRDHLDLHGTMEEYYRTKRRLF--LWARGPKLSNADDAWGRRLAGEVEG----- 268

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG +  AD+++   +     +   ++   +++ +     G +  QN      +   L
Sbjct: 269 VRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIEVPLFGDYNVQNAAGAAALALEL 328

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +T  +AL       GR +R       GF  ++D  Y      ++A + V  +++  
Sbjct: 329 GVPGETVARALRGMPQVPGRFERV---GGPGFEVIVD--YAHTDVGLEAVLRVAREVARR 383

Query: 367 -GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH--VLALKDALPR 420
              GR I V G   E     +     +A  L+   I      +          +   +  
Sbjct: 384 GRPGRVICVFGAAGERDGAKRPLMGRVASRLADRGIITTDDAYSEDPEKIAREVAAGVED 443

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + +   + S   +GDVVVV  K 
Sbjct: 444 GRLEIVLDRREAIRRAL-SEAGEGDVVVVAGKG 475


>gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 513

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 176/483 (36%), Gaps = 50/483 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   LLQ +    +  + +  +  IS+DSR +     F A+     +    +  A+ K
Sbjct: 8   MQSLTLLLQDVVAEGV-ELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQKHLHQALDK 66

Query: 64  GAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITG 115
           GA  V+++ D   +      +    +  + V ++      +A           T+IA+TG
Sbjct: 67  GAFAVLIDADKPLTQTETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIAVTG 126

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVD----- 159
           + GKT+  + +   L +  K    IG+                  P+++ R+        
Sbjct: 127 TNGKTSVSQFIAQVLEADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEG 186

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + E     L + R   + V  ++AV+T ++  HL     + + A AK  +FE +  
Sbjct: 187 CEYVVLEASSHALEQGRL--NSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFE-MGS 243

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N  DSF   L           + ++  S  AD      +   +    ++ + G+
Sbjct: 244 VSRAVINACDSFGRTLMNALR--SDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHGQ 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +     +G     N L TLG++  +      A +ALS      GR +    A      
Sbjct: 302 QQKTTLPVLGRFNVDNALATLGVLLSIGYQPSQARQALSQCRAVAGRME----AYGVDGQ 357

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++   Y   P +++ A+  L     + +G+   V G   +  +  +     +AE+    
Sbjct: 358 PMLVIDYAHTPDALEQALRTLRG-HLNQQGKLWCVFGCGGDRDKGKRPLMGKIAEI---- 412

Query: 400 NISHVWLSGFHVL-----ALKD---ALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +       A+ +   A  +  H    E        +  S     D+V+V 
Sbjct: 413 EADEIIITDDNPRTEDHQAIAEDILAGCQQPHAIRVELDRKVAISYAISHAAPNDIVLVA 472

Query: 450 -KS 451
            K 
Sbjct: 473 GKG 475


>gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
 gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
          Length = 508

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 172/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
 gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 173/485 (35%), Gaps = 53/485 (10%)

Query: 1   MNPLWTFHDLLQA---IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+   T   LL     +  +  G +P   V+ + +DSR + P   F A++G   DG  FI
Sbjct: 1   MSNTITLATLLAPWVDLAANPFGRLP---VSQLELDSRKVTPGATFVAVQGHAVDGRKFI 57

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             A+ KGA  VV         GS+     IPV  ++ +   L+ LA          +I +
Sbjct: 58  ASAIDKGAAAVVAQESSEHPHGSIEVQAGIPVVYIESLDSQLSALAERLYPLQSMKLIGV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIG---------------SYNNHIGVPLTLARMPV 158
           TG+ GKTT  +++   L  ++K  A +G               +  + I +  TLA +  
Sbjct: 118 TGTNGKTTITQIIAQWLGLVEKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQ 177

Query: 159 D-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D+   E+    L + R     +   ++V T ++  HL     +EE   AK  +F   
Sbjct: 178 QSADYTAMEISSHGLVQGR--VKTLPFAVSVFTNLSRDHLDYHGTMEEYEQAKLTLFTE- 234

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            KT    +N DD       +        ++ +     +      +         +     
Sbjct: 235 HKTAHAVINVDDPVGARWASTLANSVQVSLKT--LDADNAIYASQVDYSESGISLSFSGM 292

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               ++    IG   A N+L+ L  +  L  D    ++  S   P  GR + ++      
Sbjct: 293 YGDGKLDVPLIGEFNANNVLVALATLLTLGIDKQRLVETASQLTPVIGRMELFQTPSKAK 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                   Y   P +++ A+  L     H +G+   + G   +     +    ++ E L+
Sbjct: 353 VVV----DYAHTPDALEKALLALR---VHCKGKLWVIFGCGGDRDVGKRPMMAEIGERLA 405

Query: 398 LYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVV 448
                 V ++           + + +   +      +++        F  S     D+++
Sbjct: 406 ----DKVIIADDNPRSEDPARIVEDMLAGMSQPDLASVEHDRFNALQFALSQSQAQDIIL 461

Query: 449 V--KS 451
           +  K 
Sbjct: 462 LAGKG 466


>gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8802]
 gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802]
          Length = 501

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 167/480 (34%), Gaps = 44/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +    DLL  +   +I  +P     Q  V GI  +S +    + F  + G   DG  F  
Sbjct: 1   MVKLQDLLAKVP--TIQEIPPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQFWT 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDDV--LGALNKLAVAARLRSKATIIAITG 115
            A++ GA   ++  +  A       + V   +D+  + A    A       +  +I +TG
Sbjct: 59  SALEAGAVAAIITPEAAAHFPPTPDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIGVTG 118

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VD 159
           + GKTTT  ++   L+  +   A +G+           A                     
Sbjct: 119 TNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAVDAG 178

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    L + R      +  +AV + +   HL     +E+  SAK+ +F     
Sbjct: 179 NHYCVMEVSSHALAQGR--VKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDYL 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD++ + L      L    ++S+  S  +ADF        +      +    
Sbjct: 237 AKRAIINLDDAYGQRL---IQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQ 293

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++      +G     N+L  +  V  L  D++  I  L  F    GR +R + +  Q  
Sbjct: 294 GTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQEI 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D  Y   P S++   ++L    P   G+ I V G   +     +     ++  L+ 
Sbjct: 354 SVIVD--YAHTPDSLE---NLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLAD 408

Query: 399 YNI---SHVWLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++    +         +  +   +P  ++                    GD V++  K 
Sbjct: 409 VSVVTSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKG 468


>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
 gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
          Length = 487

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 180/478 (37%), Gaps = 51/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +   S     +  +  I  DSR +     F A+ G   DGHDFI  A+  
Sbjct: 1   MKVLKDILYKVSLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALAL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  V+   + + S     I    V +   A+  +A         K  ++A+TG+ GKTT
Sbjct: 61  GAKAVIF--EKLPSELQKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFEL 167
           T  +L      +  +   + +  N I   +               L +  ++       +
Sbjct: 119 TVTLLHQLFMRMGYSTGLLSTVENKINEEVIPATHTTPDSVSIQALLKQMLEAGCTHCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     ++   AV T I+  HL      +E   AK ++F+ L K     +N 
Sbjct: 179 EASSHAIVQERIAGLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDELPKAAFALVNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++             +FG    A+F+ +      E   +E+ + G  +      
Sbjct: 239 DDKRGMVMLQNCKGSHQ----TFGLKTPAEFKAKIISNTLEG--LELDINGTLI--WFMM 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L  LG   +L  + +  ++ LS      GR  R       G  T I + Y 
Sbjct: 291 IGAFNAYNLLGVLGTAVLLGEEEEEVLRELSGIKGARGRFDRISI----GGVTAIVD-YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +  ++ +    E + I ++G     G   ++    +A++    +   V L+
Sbjct: 346 HTPDALDNVLKTINGVRTGVE-QLITIVGC---GGNRDKTKRPIMAKIAVQES-DKVILT 400

Query: 408 GFH------VLALKDALPRSI---HVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             +      +  LKD +   I    +  S T++     I+++      GD++++  K 
Sbjct: 401 SDNPRFEDPMDILKD-MQTGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKG 457


>gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
 gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
          Length = 523

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 167/481 (34%), Gaps = 51/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL  +   S+G      +N +S+DSR + P   FFA +G    GHD+I  AV KGA 
Sbjct: 26  LSDLLAGL--VSVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGAV 83

Query: 67  LVVVNTDMVAS------IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVG 118
            V  +  +  S      + +  +P+  + D+   L         R   +  ++ +TG+ G
Sbjct: 84  AVAYDPIIPLSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNG 143

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DF 162
           KT+    L  AL   +     IG+    +   L  +++                     +
Sbjct: 144 KTSVSHFLAQALHQQEAPCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRY 203

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L + R   + V  + A+ T ++  HL     +    +AK  +F G      
Sbjct: 204 AVMEVTSHALEQGR--VNGVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLF-GQPGLRH 260

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD+  E   A  H     T+ S+G  +  A  ++ +         M +Q      
Sbjct: 261 AVINVDDTAGEAFLA--HLPAEVTVISYGLTNPQASLRVNELHCDRRGIVMNIQGPWGEG 318

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E++   +G   A N+L  LG +         A++ LS      GR +            L
Sbjct: 319 ELICPLLGRFNAYNLLAALGGLLTTGMPFTEALQRLSQVQAVAGRMEPM---GGAAGEPL 375

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P +++ A+  L         R   V G         +     +AE       
Sbjct: 376 LVVDYAHTPDALEQALCSLRA-HLEPGARLWCVFGCGGNRDRGKRPLMGAVAE----RWA 430

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V L+  +         ++ +   +     V+                   D+V++  K
Sbjct: 431 DFVMLTDDNPRDEDPRQIIIEILSGMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGK 490

Query: 451 S 451
            
Sbjct: 491 G 491


>gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri DSM 4166]
          Length = 487

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 164/457 (35%), Gaps = 45/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGS 80
              +  +++DSR +   + F A+ G  +DG D +  A+ +GA  V   +   D   +  +
Sbjct: 15  DVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQALTGAA 74

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + +PV  +   L A+              ++ +TG+ GKT+  +++  AL  + +    I
Sbjct: 75  VMVPVHHLAGQLSAIAGRF-YGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGEPCGII 133

Query: 141 GSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHI 186
           G+        L + R       G+                + +S  G  +     +   +
Sbjct: 134 GTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQGRVAALEFDV 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T ++  HL     +E   +AKA +F G+       +N DD F   L  +        
Sbjct: 194 AVFTNLSRDHLDYHGTMEAYGAAKARLF-GVPGLSCRVINLDDGFGRALAGEERES---R 249

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + S+  +  +A     + +   +     +        +    +G     N+L  +G +  
Sbjct: 250 LISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVLAAVGALLG 309

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   +D  +  L       GR +R       G   L+   Y   P +++  ++ L    P
Sbjct: 310 MDYPLDEILAVLPELEGPAGRMQRL----GGGDRPLVVVDYAHTPDALEKVLTALR---P 362

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           H  GR + + G   +     +    ++AE L+      V ++  +            ++ 
Sbjct: 363 HARGRLLCLFGCGGDRDTGKRPLMAEVAERLA----DGVVVTDDNPRNEAPERILDDVRS 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  V + +        + ++    DVVV+  K 
Sbjct: 419 GFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKG 455


>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
 gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
          Length = 487

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 164/457 (35%), Gaps = 45/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGS 80
              +  +++DSR +   + F A+ G  +DG D +  A+ +GA  V   +   D   +  +
Sbjct: 15  DVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQALTGAA 74

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + +PV  +   L A+              ++ +TG+ GKT+  +++  AL  + +    I
Sbjct: 75  VMVPVHHLAGQLSAIAGRF-YGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGEPCGII 133

Query: 141 GSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHI 186
           G+        L + R       G+                + +S  G  +     +   +
Sbjct: 134 GTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQGRVAALEFDV 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T ++  HL     +E   +AKA +F G+       +N DD F   L  +        
Sbjct: 194 AVFTNLSRDHLDYHGTMEAYGAAKARLF-GVPGLSCRVINLDDGFGRALAGEERES---R 249

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + S+  +  +A     + +   +     +        +    +G     N+L  +G +  
Sbjct: 250 LISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVLAAVGALLG 309

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   +D  +  L       GR +R       G   L+   Y   P +++  ++ L    P
Sbjct: 310 MDYPLDEILAVLPELEGPAGRMQRL----GGGDRPLVVVDYAHTPDALEKVLTALR---P 362

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           H  GR + + G   +     +    ++AE L+      V ++  +            ++ 
Sbjct: 363 HARGRLLCLFGCGGDRDTGKRPLMAEVAERLA----DGVVVTDDNPRNEAPERILEDVRS 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  V + +        + ++    DVVV+  K 
Sbjct: 419 GFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKG 455


>gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
 gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
          Length = 467

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 168/447 (37%), Gaps = 41/447 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFG 87
           +DSR + P   F A+ G    G +FI +A+++GAG ++ +        +        +  
Sbjct: 1   MDSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVV 60

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----- 142
            +D    L   A         T+IA+TG+ GKT+           +      +G+     
Sbjct: 61  AEDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVEG 120

Query: 143 -----YNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +    P+TL RM    +         E     L + R     V    A  T  
Sbjct: 121 AYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRL--DGVHLVAAGFTNF 178

Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              HL   +  +E  +AKA +F   L + G   +N +DS    + A +   G + + + G
Sbjct: 179 TQDHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERG-QDLITVG 237

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   AD +L+  +  +    +  + + +  ++    IG   A+N+L+  G+     AD +
Sbjct: 238 REVGADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAE 297

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L       G   R + A  +     +   Y   P ++  AI  L    PH  GR 
Sbjct: 298 RVFETLPGMKTVRG---RMQLAATRDTGATVFVDYAHTPDAVATAIKALR---PHVMGRL 351

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHY 426
           IA++G     G+  ++    + +    Y    V ++          +++ A+ +      
Sbjct: 352 IAIVGA---GGDRDRAKRPLMGQAAGTY-ADLVIVTDDNPRSEDPASIRAAVMQGCPGA- 406

Query: 427 SETMDGLFLFIQ--SSLVDGDVVVVKS 451
           SE  D     ++   +L  GD +++  
Sbjct: 407 SEVGDRAEAILRGVDALGPGDALLICG 433


>gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
 gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
          Length = 493

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 158/462 (34%), Gaps = 52/462 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR +     F AI G   DG  FI  A+++GA  V+       + G++  
Sbjct: 22  SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TL+ +      +   E+     G I+     + 
Sbjct: 142 MGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSH--GLIQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SH 240
               V T ++  HL     +EE A+AK  +F    + G   +N DD        +   + 
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLNNAL 258

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ +K    F +S                  +E   +     +    IG   A N+++  
Sbjct: 259 AVSLKPTTEFSQS----VYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAF 314

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L       +       P  GR + ++   N          Y   P +++ A+  L
Sbjct: 315 TTLLSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVV----DYAHTPDALEKALQAL 370

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H  G   A+ G   +     +    ++AE L       V L+  +         +
Sbjct: 371 R---VHCHGELWAIFGCGGDRDAGKRPMMAEIAERLG----DKVVLTDDNPRSEEPALIM 423

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L +               +        D++++  K 
Sbjct: 424 KDMLAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465


>gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 503

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 171/477 (35%), Gaps = 46/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G +        V+GI+IDSR + P   F A+ G    G  F+  A++ GA
Sbjct: 9   SLAEL--GLHGATGARGSARRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGA 66

Query: 66  GLVVVNTDMVASIGSLSIPV----FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V +    A IG   I        + DV  A+   A        A + A+TG+ GKT+
Sbjct: 67  TAIVTDPAGAAIIGDTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTS 126

Query: 122 TKEMLTIALSSIKKTYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFE 166
               L             IG+            +     LTL R+  +     V     E
Sbjct: 127 VTSFLRQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAME 186

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
              SH  E R L   V   +A  T  +  HL      +   +AKA +F   L + G   +
Sbjct: 187 AS-SHGIEQRRL-EGVMLSVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVI 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     +   +   G + I   GK+  A  +L   +  +    +  + +G++ +   
Sbjct: 245 NIDDPKGADIARVAEDRG-QEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRL 303

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A+N+L+  G+      D      A        G   R + A  +G    +   
Sbjct: 304 DLIGGFQAENVLLAAGLAIASGDDPAHVFAAFPHLTTVRG---RMQLAARRGNGASVFVD 360

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +   P +++   +VL  I PH  GR +A++G     G+  ++    +    + +    V 
Sbjct: 361 FAHTPDAIE---TVLQAIRPHVMGRVVAIVGA---GGDRDRTKRPLMGAAAARF-ADMVI 413

Query: 406 LSG-----FHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++           ++DA            V          L     L  GD +++  
Sbjct: 414 VTDDNPRTEDAATIRDAVMAGAVAEGGCDVREVGDRAEAILRGVDMLEAGDALIICG 470


>gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 506

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 106/474 (22%), Positives = 179/474 (37%), Gaps = 61/474 (12%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +G+ P   VN    DSR  AP + F A  G   DG DFI  AV +GA  V+   D   
Sbjct: 27  ERLGLAPGELVN----DSRRAAPGKVFVAYPGDARDGRDFIPQAVAQGADGVLWEADHYQ 82

Query: 77  SIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +L+IP  GV  +   + ++   V         +I +TG+ GKT+    +  ALS++ 
Sbjct: 83  WDPALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTNGKTSVAHWIAQALSALG 142

Query: 135 KTYACIGSYNNH---------------------IGVPLTLARMPVD-VDFGIFELGMSHL 172
           +  A IG+  N                      I +   LAR   +       E+    L
Sbjct: 143 RKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARYRGEGAVACAMEVSSHGL 202

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            + R   +  R  +AV+T ++  HL     ++  A+AKA +F          LN DD+F 
Sbjct: 203 AQGR--VNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLF-NWPDLEWAVLNVDDAFG 259

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + L+ ++       +  +G  + A    R  +       + +Q      E+    +G   
Sbjct: 260 QRLEGETRPA---RVAGYGFQRGA-VVARGLQLSQAGMHLALQTDWGDAEIDAPLLGRFN 315

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+L  L  + +    +D A +AL+   P  GR +     L      L+   Y+  P +
Sbjct: 316 AANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQ----TLGGEAHPLVVVDYSHTPDA 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++  ++ L +I+    GR I V G     G         L    +      +W++  +  
Sbjct: 372 LEKVLATLREIAG--GGRLICVFGC----GGNRDKGKRPLMGAAAGRGADEIWVTSDNPR 425

Query: 413 A-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         L +A         +E    +F  +      GDVV++  K 
Sbjct: 426 HEDPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAV-GGAHHGDVVLIAGKG 478


>gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
 gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
          Length = 479

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 177/475 (37%), Gaps = 51/475 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKNINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHQFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                       + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQNLVMEVS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 176 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   + A     + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 233 DEYGQRLCNMTQA----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ A+  L+  +P+       + G     G    S    +A++   Y    V  
Sbjct: 343 AHTPDALEKALQTLNSYNPNN---LWCIFGC---GGNRDTSKRPIMAQIAEEYASKIVIT 396

Query: 407 SG----FHVLALKDALPRSI---HVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +  + D + +       H +  + +    F   +   GD++++  K 
Sbjct: 397 EDNNRFESIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
 gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
          Length = 494

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 172/473 (36%), Gaps = 38/473 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L + I    +G      V+GI+  S ++   +AFF I G + DGH F   A+  G
Sbjct: 3   MTCRELFEGIDCTFLGNA-DEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A ++V    +  +  +  + +  V D   A+            +   ++ ITG+ GKTTT
Sbjct: 62  ARVIVAQRKVYLADATDVVEII-VSDTRRAMAAAAANFYGHPSTDFHLVGITGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGE----IR 176
             ++        +T   IG+  N I   L  A    P  VD       M   G     + 
Sbjct: 121 TYLVEHIAEVAGRTTGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVAME 180

Query: 177 FLTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             +H +           +   + +   HL      E    AKA +F          +  D
Sbjct: 181 VSSHALDLERTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARR-VICID 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + L  +  A G + I S G    A       K  +  + + + ++G+   + +  +
Sbjct: 240 DKWGQELLRRCAAAGDR-ILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLV 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+++ LGI   L   ++  ++ALS      GR +R     + G    +D  Y  
Sbjct: 299 GRFNVSNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVD--YAH 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++ AIS ++ ++   +GR I V G     G+   +    + +     + + V    
Sbjct: 357 TPDALRKAISAVANLT---DGRVIVVFGC---GGDRDATKRPLMGQAALSGDFAVVTSDN 410

Query: 409 FHV----LALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L      S                 +    GD ++V  K 
Sbjct: 411 PRSEDPDAIISDILEGMESASERFEVHPDRREAIARAIALANTGDAILVAGKG 463


>gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 493

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 170/462 (36%), Gaps = 51/462 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83
            ++ +++DSR +     F AIKG   DG  FI  A+++GA  V+  +D V   G++S   
Sbjct: 19  EISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQGASAVLAQSDEVNKTGTISFLD 78

Query: 84  --PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             P+  +D +   L+ +        + K  ++ ITG+ GKTT  +++    + + K    
Sbjct: 79  QTPIIYLDALSIKLSAVAGRFYHAEQRKMQLVGITGTNGKTTISQIIAQWATLLGKPAGV 138

Query: 140 IGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+  N                I +  TL  +  ++   +  L +S  G ++   + +  
Sbjct: 139 MGTTGNGLLTDLKPALNTTGSPIEIQQTLTDL-ENIGAKLTALEISSHGLVQGRVNALNF 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALG 243
             AV T ++  HL     +   A AK  +F          +N DD+     LK   +A+G
Sbjct: 198 DAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPK-YSIINADDTVGASWLKELPNAVG 256

Query: 244 I---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +   +   SF   K            ++   + +     + ++    IG   A N+L+  
Sbjct: 257 VSLNEGNLSFHSGKK--VFATSVIYSTDGIQISLNSDWGTADLSVPLIGAFNANNILVAF 314

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L  D+     A        G   R     ++G   ++ + Y   P ++  A+  L
Sbjct: 315 ATLLSLGYDITELADAAPKLTAVIG---RMELFSSEGNAKVVVD-YAHTPDALDKALQAL 370

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------- 413
                H EG+   + G   +     +     +AE         + LS  +  +       
Sbjct: 371 R---VHCEGKLWCIFGCGGDRDTGKRPMMASIAE----QQADVIILSDDNPRSEDPSLIT 423

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L +    H          F  S     D++++  K 
Sbjct: 424 KDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKG 465


>gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
 gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
          Length = 504

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 99/479 (20%), Positives = 165/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++        +  V  +  DSR +     F  I G   DGH +I     KG
Sbjct: 17  MKLTQLLERLEYEVRQGSDEVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYIDDVAAKG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V   + A  G   + V  VDD   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 77  AAAVIVERPVDAPKG---LTVIRVDDTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 133

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------MPVDVDFGIFELG 168
             M+   L  +      IG+    IG     A                  +       + 
Sbjct: 134 TYMVKSILEGVGHKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQMAEAGCDSVVME 193

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  ++  I + T +   H+        E+    K  +F           N
Sbjct: 194 VSSQGLMLHRTAGIQFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFTQCNLG---IAN 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEV 283
            DD ++E +   +       + +FG S+ AD +    +  S   ++ V+ Q     + +V
Sbjct: 251 VDDRWYEDVFKNATC----KVETFGFSEKADLRATDVQHISRPGYLGVKYQVSGLMNFDV 306

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +       V+    AL V   K     R         FTL+ 
Sbjct: 307 EIDIPGDFSVYNSLTAIAVCRHFDVPVENIKTALKVAKVKG----RIEMVKVSDDFTLMI 362

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ +  L    P    R + V G     G  S++   ++ EV    +   
Sbjct: 363 D-YAHNAMSLESLLLTLRDYHPQ---RIVTVFGC---GGNRSKTRRYEMGEVAGRLSDFT 415

Query: 404 VWLSG----FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S         A+ D +    +     Y           ++  +   GDV+++  K 
Sbjct: 416 VITSDNPRFEEPQAIIDDIIVGMKKTDGKYISICDRKEAIKYVIENGQPGDVIILAGKG 474


>gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 499

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 180/487 (36%), Gaps = 57/487 (11%)

Query: 4   LWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L   +   H +    +  V GI+ DSR + P + F  + G H DG  F   A  
Sbjct: 1   MKTIEELCGQVSATHEVRGDARVQVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
           KGA  V+    +    G++      V D+  A+ ++          K  +I +TG+ GKT
Sbjct: 61  KGAVAVLTTEPLPLPDGTV---QIIVPDIHAAVEEMVPFFYDYPGKKMRMIGVTGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV---------------DFGI 164
           TT  ++   L +       +G+ +  +  + L +     DV                  +
Sbjct: 118 TTTHIIAHILRTAGYHVGVLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGITHVV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------E 218
            E+    L   R     +    AV T +   HL     +E  A+AKA++F GL      +
Sbjct: 178 MEVSSHALALQR--VAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPVK 235

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K  T  LN DD +  L++    A G   + ++G  + A  +    +   + S  +V    
Sbjct: 236 KGKTAVLNRDDPWSVLMR---KACGTAEVLTYGTEREASLRGTHLQVALKHSAFDVTGPF 292

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             M +  +  G     N L  +G       D +T  KA+  FH   G   R+        
Sbjct: 293 GDMHLQMNITGLFNVYNTLAAIGAAYAEGVDPETIGKAMQTFHAVPG---RFELVEAGQD 349

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F ++ + Y+  P S++ A++    ++PH   + I V G     G+  ++    +  + + 
Sbjct: 350 FAIVVD-YSHTPDSLEKALTTARAMNPH---KIIVVFGC---GGDRDRTKRPIMGRIAAT 402

Query: 399 YNISHVW------------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           +    V             +       +K+AL                    +    GD+
Sbjct: 403 HADIPVVTSDNPRSENPEAIVAEVAAGVKEALQPGQQYEVLTDRRRAIRRAVALANTGDM 462

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 463 VLIAGKG 469


>gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
 gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
          Length = 487

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 165/464 (35%), Gaps = 55/464 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G++ DSR + P   F A+ G   DG +FI  A+ +GA  V+   D +A+  +   
Sbjct: 17  DPVVTGVTADSRKVGPGTLFCALPGTARDGREFIPQALSQGAAAVLAPEDTLATASN--- 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +    DV  A    A A       T +AITG+ GKT+         + +    A +G+ 
Sbjct: 74  -ILTTYDVRRAYALAAKAFYGAQPKTCVAITGTNGKTSVATFCRQMFAHMGYHSASVGTL 132

Query: 144 NNHIG--------------------VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182
                                    +   LA +  D V     E     + + R     V
Sbjct: 133 GIVTQNGAAEHAITPPGLTTPDAADIAEHLASLARDGVTHLALEASSHGIDQRRL--DGV 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHA 241
               A  T +   HL   + +E   +AK  +FE L   G    LN D   +    A +  
Sbjct: 191 TLTAAGFTNLTQDHLDYHATMEAYRAAKLRLFEQLLPRGRVAVLNADSDAYNAFAASAIT 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G  ++ S G+ +     L       +   + ++ QG+  EV     G   A N L+  G
Sbjct: 251 AGA-SLLSVGE-RGQHLTLTHRDLTVDGQILYLEHQGRKFEVKLKLAGLFQASNALVAAG 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +  ++AL+      GR +R     N      I   Y   P  ++   +VL 
Sbjct: 309 LCLAAGQKAEPVLEALTHLTGARGRLERVGSTGNGAE---IYVDYAHTPDGLE---TVLK 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
            + PH +GR + V G     G+  +     +  +        V ++          +++ 
Sbjct: 363 ALRPHTQGRLVCVFGC---GGDRDRGKRPQMGAIAERL-ADRVIVTDDNPRSEEPASIRA 418

Query: 417 ALPRSIHVHYSETM-------DGLFLFIQSSLVDGDVVVV--KS 451
            +   +    S  +         +F  + S L  GDV+VV  K 
Sbjct: 419 EIMAGLAGTQSSNVLEIGDRRQAIFEAVAS-LKTGDVLVVAGKG 461


>gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1]
          Length = 496

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 160/463 (34%), Gaps = 49/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V         +     
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDA 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +          +  ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGR--VAALEFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
           IAV+T ++  HL     +E   +AKA++F          +N DD F   L A        
Sbjct: 194 IAVMTNLSRDHLDYHGSMEAYEAAKAKLFAW-PSLRCQVVNLDDDFGRRLAADFARRPSV 252

Query: 245 ----KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + S+  +S  A    R+     +     +        +    +G     NML  
Sbjct: 253 DHIETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERILRSQLLGRFNLSNMLAA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  L   +D  +K         GR +R       G   L+   Y   P +++  +  
Sbjct: 313 VATLLALDYALDEILKVTPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L    PH  G+ + + G   +     +    ++AE L+      V ++  +         
Sbjct: 369 LR---PHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLA----DRVLVTDDNPRTEDPLRI 421

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++    R   V Y          + ++    DV+V+  K 
Sbjct: 422 FDDIRPGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKG 464


>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
 gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
          Length = 499

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 150/386 (38%), Gaps = 38/386 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR  +    F A++G H DG D+I  A+  G  ++V       S+    +   
Sbjct: 34  VTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESLSD-EVAWL 92

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+         R   + TI+ +TG+ GKTTT  +     + +    A   +  
Sbjct: 93  TVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVC 152

Query: 145 NHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             IG     A              R  VD       + +S    ++   + +   +A+ T
Sbjct: 153 IRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFT 212

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     ++   +AK  +F+ L       +N DD    ++     A     ++++
Sbjct: 213 NLTRDHLDYHGTMQAYIAAKKLLFDNLSPDAYALVNADDRNGSVMVQNCAA----HLHTY 268

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               +AD+  +   Q  + S   + L  + +E     +G + A N+    G+  +L  D+
Sbjct: 269 AMRSHADYMSQLLGQYVDGS--TLLLDNEEVE--IKLVGSYNAYNVTAVYGVARLLLPDL 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D ++    +   +   G+    A  +G+  ++D  Y   P +++  +  +S+++      
Sbjct: 325 DKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELNASQ--- 379

Query: 371 RIAVLG-----DMC---EMGELSQSF 388
              V+G     DM    EMG ++ + 
Sbjct: 380 VYVVVGAGGDRDMGKRPEMGRIAYNM 405


>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
          Length = 529

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 163/476 (34%), Gaps = 53/476 (11%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           Q +QG   G+     V G+  DSR +   + F  + G   DG +F+  A+ +GA   ++ 
Sbjct: 28  QVVQGSLEGVQ----VRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTRGAVAALIA 83

Query: 72  TDMVASI------GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            +    +      GS  I V     +  AL ++A         + T++ +TG+ GKTTT 
Sbjct: 84  QEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVTGTNGKTTTT 143

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
            ++   L +  +  A +G+  N       +A                      +  + E+
Sbjct: 144 HLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEAGAEVAVMEV 203

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R          AV T +   HL     +E    AKA +F+     G   +N 
Sbjct: 204 SSHALAQDR--AWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPEYLQGRAVVNA 261

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD     L     A      YS    +          +         +     ++ V   
Sbjct: 262 DDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHPNGLQATLHTPLGTLAVAAP 321

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +G+   L   ++    AL  F    GR +R          T+I + Y
Sbjct: 322 LVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLP--GQDITVIVD-Y 378

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  L    P  +GR I V G     G+  +     +  + + +    V +
Sbjct: 379 AHTPDGLENLLKALR---PQVQGRLICVFGC---GGDRDRGKRPQMGRIAATW-ADRVVV 431

Query: 407 SGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +   +P S      +    + L I  +   GD VV+  K 
Sbjct: 432 TSDNPRTEDPQQILQDILAGIPGSPWAVEVDRRQAIRLAILEA-QPGDTVVIAGKG 486


>gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
 gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
          Length = 508

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 171/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + +  +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTNSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii NCTC 11218]
          Length = 495

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 182/484 (37%), Gaps = 53/484 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + T   L Q I        P      V  + +DSR I   + F AI G   DG  FI  A
Sbjct: 1   MNTSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA LV+         GS+     +PV  ++ +   L++LA          +IA+TG+
Sbjct: 61  ITQGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDVDFGIFE------ 166
            GKTT  +++   +  +    A +G+  N    H+          V+V   +FE      
Sbjct: 121 NGKTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGA 180

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V     V + ++  HL     ++  A AK  +F    +T  
Sbjct: 181 EYTAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTE-HETRQ 239

Query: 223 IFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--K 279
             +N DD        +  HA+G+    S     NA+  L   +    +S + + + G   
Sbjct: 240 AIINVDDEVGARWAQQLQHAVGV----SLNAKPNAEQALWAVQVSYAESGITIDVDGSWG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + ++    IG   A N+++ L  +  L  ++D  + A     P  GR + ++        
Sbjct: 296 AGQLRAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGKAKVV 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y   P +++ A+  L     H +G+  A+ G   +     +     +AE  +  
Sbjct: 356 V----DYAHTPDALEKALRALR---VHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFA-- 406

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
               V L+  +  +         +   L    H +      D L   + S   + D++++
Sbjct: 407 --DRVILTDDNPRSEDPQAIVNDMLAGLKAPQHANVEHNRFDALRTAL-SQAGEQDIILL 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
 gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
          Length = 495

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 181/484 (37%), Gaps = 53/484 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + T   L Q I        P      V  + +DSR I   + F AI G   DG  FI  A
Sbjct: 1   MNTSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA LV+         GS+     +PV  ++ +   L++LA          +IA+TG+
Sbjct: 61  ITQGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDVDFGIFE------ 166
            GKTT  +++   +  +    A +G+  N    H+          V+V   +FE      
Sbjct: 121 NGKTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGA 180

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V     V + ++  HL     ++  A AK  +F    +T  
Sbjct: 181 EYTAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTE-HETRQ 239

Query: 223 IFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--K 279
             +N DD        +  HA+G+    S     NA+  L   +    +S + + + G   
Sbjct: 240 AIINVDDEVGARWAQQLQHAVGV----SLNAKPNAEQALWAVQVSYAESGITIDVDGSWG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + ++    IG   A N+++ L  +  L  ++D  + A     P  GR + ++        
Sbjct: 296 AGQLRAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGKAKVV 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y   P +++ A+  L     H +G+  A+ G   +     +     +AE  +  
Sbjct: 356 V----DYAHTPDALEKALRALR---VHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFA-- 406

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
               V L+  +  +         +   L    H        D L   + S   + D++++
Sbjct: 407 --DRVILTDDNPRSEDPQAIVNDMLAGLKTPQHASVEHNRFDALRTAL-SQAGEQDIILL 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
          Length = 508

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 172/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       IK  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L+     +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DIIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 548

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 154/456 (33%), Gaps = 49/456 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G+++DSR + P + + A+ G  + G  F   A   GA   + +  +        +
Sbjct: 56  DPAVRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQARASGAAAALSDRPLP------GL 109

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D    L  LA            +  +TG+ GKT+T  +L   L S       I 
Sbjct: 110 PTLVVPDPRAVLGPLAAHLHDHPSHHLEVYGVTGTNGKTSTTHLLDAGLRSAGHRTGMIS 169

Query: 142 SYNNHIG---------------VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185
                                 +  TLA +          E+    L   R      R  
Sbjct: 170 GIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHGLALHR--VDGTRFR 227

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV T +   HL      E   +AKA +F    +     +N DD+    L A+       
Sbjct: 228 AAVFTNLGRDHLDLHGDQESYFAAKASLFAP-HRCALAVVNVDDAHGRRLAAQVRV---- 282

Query: 246 TIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +F  +  + AD++  + +  ++++   +   G    V  H +G H   N L  +  +
Sbjct: 283 PVTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVDNALGAVAAL 342

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                +V+  ++ +       GR +R     ++G   L    Y  N A+ +  +  L  +
Sbjct: 343 HAGGLNVEDVLRGMEDLTAVSGRLQRI----DEGQPFLALVDYAHNVAAQRRLLPFLRTL 398

Query: 364 SPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +    GR + VLG   E        +G  +     D+  V           +    +A  
Sbjct: 399 T---GGRLVVVLGATGERDPGKRGPLGRTAAQL-GDVVIVTDESPHDDDPAALREAVAGG 454

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                S  VH     D       S    GDVVVV  
Sbjct: 455 ARGAASAQVHVEADRDRAIRLAVSLADPGDVVVVSG 490


>gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
 gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
          Length = 494

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 157/458 (34%), Gaps = 42/458 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MV 75
           G+ PQ  + G+++DSR +     F A+ G    G  F+   + +GA  ++ +        
Sbjct: 19  GLDPQ--ITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTDAKGAEIAG 76

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            +I +    +   +D   AL+  A          + A+TG+ GKT+    L +  + +  
Sbjct: 77  EAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLRMIWTELGH 136

Query: 136 TYACIGSYN----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTH 180
               +G+            +    P+TL R         V     E     L + R    
Sbjct: 137 KAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRRL--D 194

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V+   A  T     HL      E   +AKA +F   L + G   +N  D     ++A +
Sbjct: 195 GVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGAEMRAIA 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A G + I + G+    D  L   +  +    +      +      + IG   A+N+L+ 
Sbjct: 255 AARG-QEIITVGRGLG-DIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAENVLVA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+      D +     L       G   R + A  +     +   Y   P ++  AI  
Sbjct: 313 AGLAIASGEDPEQVFDTLPHLSTVRG---RMQLAATRDNGATVFVDYAHTPDAVATAIKA 369

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
           L    PH  GR +A++G   +     +          +  N   V ++          A+
Sbjct: 370 LR---PHVLGRLVAIVGAGGDRDATKRPLMG----AAAQDNADAVIVTDDNPRSEDPAAI 422

Query: 415 KDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + A +  +             L     L  GD +++  
Sbjct: 423 RAAVMGGAPDALNVGDRAEAILRGVDMLEAGDALLICG 460


>gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 497

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 162/397 (40%), Gaps = 13/397 (3%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V +     +     I +  V +V  A  +     R +    I+AITG+ GKTTTKEM+
Sbjct: 95  VIVTDRAYRPNDIPTQIIIIQVANVDEAYWRFVHFYRNQFHIPIVAITGTSGKTTTKEMI 154

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+ ++  A   S N+       L  +  D +  +FE  +   G++       +P I
Sbjct: 155 KHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAVGSPGDVTNAGKYFKPTI 214

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I   HL+    +E    AK E+ + ++  GT+ +N +D   + L        +  
Sbjct: 215 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAEDMNTKKLDISKFNGRVLK 274

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G   +  F+    +   +    ++    K  ++   G G H   N L  +     +
Sbjct: 275 V---GIHDSCHFRASHIQYYQKGMNFKLHHIRKIYDIFVPGFGQHQVYNALAAIAAAYEI 331

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A   L  F   + + + +    +     L+D++++    S++A + VL+ +   
Sbjct: 332 GVPIPVAANQLQSFRQLKKQLQLFEGINH---SMLLDDTWSITTTSLEAGLKVLNDLGE- 387

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPRSIH 423
              ++IAV+G + ++G      H    E++    +  +   G H   + D    L  +  
Sbjct: 388 -GKKKIAVIGTITDLGSWGYIIHEQAGELIHRIGVDVLITIGEHARIMADHAVNLGFNAP 446

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V+  +    ++  +Q  + +  +V++K        ++
Sbjct: 447 VYTYKNSTLVYPLLQKIVDENTIVLIKG--DMYSEQV 481


>gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 509

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 169/473 (35%), Gaps = 45/473 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            QA         PQ     +++DSR   P   F A+ G H DG DF+  A++ G   V+ 
Sbjct: 18  AQATSARLDEWRPQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLC 77

Query: 71  NTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTI 128
             +    S+      V  V  + G L +L        +   +I +TG+ GK++    L  
Sbjct: 78  EAEALPTSVPEQEARVLAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAA 137

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHL 172
              ++    A IG+        L  AR+                   V     E+    L
Sbjct: 138 LSEALGTPAAVIGTLGVGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHAL 197

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            + R      R H AV T ++  HL     +   A+AKA +F+   +     +N DD   
Sbjct: 198 EQGRVT--GCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQH-RELALAVVNGDDRLS 254

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            L+ A   A G++ + + G  +    ++  W   ++     +      +E+    +G   
Sbjct: 255 PLMLAGL-AKGVRVLAT-GTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFN 312

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L+ +  +  + A+++    A +   P  GR +R            +   Y   P +
Sbjct: 313 LDNVLLAIATLYGMGAELNALFSAAARLAPVPGRMQRLVAE----NAPTVVVDYAHTPDA 368

Query: 353 MKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
           ++ A+  L    P  +G +   V G   +     +      AE L+      + +S    
Sbjct: 369 LRNALEALRAHLPSSDGAKLWCVFGCGGDRDRGKRPLMAQAAEALA----DRLVISDDNP 424

Query: 408 -GFHVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVDGDVVVV--KS 451
            G    A++D +   +        +          +   +  + D+V++  K 
Sbjct: 425 RGEPAAAIRDEIAAGLSTDGRARAECMGGRREAIEWTLDAAGEHDIVLIAGKG 477


>gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 508

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 153/476 (32%), Gaps = 48/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+ I    +      +++ I  DSR +     F A +G   +G  ++  A+ +GA 
Sbjct: 9   LAELLKGIA--EVPAALDCWLSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALARGAR 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
            V++            +    + +V   +         +   +  ++ +TG+ GK++   
Sbjct: 67  AVLLPGTRQHVYEKGDVVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGTNGKSSVTH 126

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGI-FELG 168
            +      +  + A +G+                   + +   LA +  +    +  E+ 
Sbjct: 127 YVAQMAEGLGMSAAVVGTLGYGRPDSLKATTHTTPDAVSLHRVLAELRDEGIELVAMEVS 186

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     V   +AV+T I   HL     +E  A AK  +F   +       N D
Sbjct: 187 SHALDQDR--AAGVNFDVAVLTNITRDHLDYHGTLEAYAEAKKRLFLS-DSVRWKVFNQD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           D +      +       T +S GK     AD         ++     + L          
Sbjct: 244 DPYGARWAQELQGPKTLT-FSIGKQDQTAADVCAEDIHFDADGMSFALDLGATREPARLA 302

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N L     +S L  +     + L+   P  GR +R     ++     +   Y
Sbjct: 303 LVGEFNLSNALAACAAMSALKVEPQAVRQQLARLTPVAGRMQRL----HEDKAPTVLVDY 358

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ A+    +   H  GR   V G     G+        +  V + Y    V L
Sbjct: 359 AHTPDALEVALKAARR---HCPGRLWCVFGC---GGDRDPGKRPLMGAVAAQY-ADEVVL 411

Query: 407 S-----GFHVLA----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     G    +    +     +  H       +    F        DV+++  K 
Sbjct: 412 TDDNPRGEDPESIVAQIVKGAEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKG 467


>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 486

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 94/463 (20%), Positives = 165/463 (35%), Gaps = 44/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR +AP   F A+ G   DG  FI+ A  +GA + + +  
Sbjct: 14  LEAQLEGPAGLLDISGLSSDSRKVAPGNVFVAVAGTKADGAGFIVDAAGRGAAVAIASQA 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +       SIPVF V +    L+  A     +   T++A+TG+ GKT+         +  
Sbjct: 74  I-----DASIPVFAVKEPRRFLSIAAARFHGKQPDTMVAVTGTAGKTSVASFTRQIWAYA 128

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
             T A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 129 GHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAGEGVTHAAMEASSHGLDQCRL 188

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               VR   A  T +   H+     +E   +AK  +F+ L   G+   +  DD +     
Sbjct: 189 --DGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLPKGSPAVIFADDPWSAQ-A 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K+       I + G+  +    L++ +    +   E+ + G+  EV     G     N 
Sbjct: 246 IKAATDAGHDIRTVGRKGD-YLSLKRVEHFRHKQMAEIHIGGEIFEVDIPLAGDFQVANA 304

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+          A  A++      G   R     +     L    Y   P +++  
Sbjct: 305 LVAAGLAMSTGV---EAKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDALE-- 359

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +VL  + P   GR I V G     G+  +     + E+        V ++  +  + + 
Sbjct: 360 -NVLGSVRPFTTGRVIVVFGC---GGDRDRGKRPIMGEIACRL-ADVVIVTDDNPRSEEP 414

Query: 417 ALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A  R      +                 S L  GD ++V  K 
Sbjct: 415 ASIRAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKG 457


>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium meliloti 1021]
 gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
 gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
 gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
          Length = 486

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 91/463 (19%), Positives = 158/463 (34%), Gaps = 42/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +     G      + GI+ DSR + P + F A+ G   DG  +I  A+ +GA  VV  T 
Sbjct: 14  LSAQLKGDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVAGTG 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             A  G+   PVF + D    L K A +   R   T++A+TG+ GKT+         +  
Sbjct: 74  TPAEAGA---PVFAISDPRRFLAKAASSFYGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
             + A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 131 GFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQRRL 190

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               V    A  T +   H+     +E   ++K  +F  L   G+   +  DD +     
Sbjct: 191 --DGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAI 248

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +   G   + + G++ +    L++ +    +   EV +     E+     G     N 
Sbjct: 249 AAARKAG-HDVRTVGRNGDF-IALKRVEHFRHKQSAEVHVGDDIYEIHVPLAGDFQIANA 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+          A  AL       G   R           L    Y   P ++   
Sbjct: 307 LVAAGLAMSTGITAKAAFSALERLQGASG---RLELVGQTKDGALAYVDYAHKPDALA-- 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
            +VL  + P   GR + V G     G+  +     + E+ S      V ++  +  +   
Sbjct: 362 -NVLESVRPFTTGRVVVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVP 416

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                + +  +                   L  GD ++V  K 
Sbjct: 417 EVIRAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKG 459


>gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
 gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea]
 gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
          Length = 492

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 178/477 (37%), Gaps = 43/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +DLL       +        NG+S+DSR+I   + F A+ G   DG  FI  A ++G
Sbjct: 1   MQLNDLL----APWLHYSGSESFNGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQG 56

Query: 65  AGLVVVNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           A   +V+TD     G        SL I  F ++  L A+           +  +I +TG+
Sbjct: 57  AVAALVHTDEPTEHGQVLSEASASLQILFFQLNQELSAIGA-QAYPLAPQRLKLIGVTGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFG-- 163
            GKT+  +++   ++   K  + +G+  N +             P+T+A    D D    
Sbjct: 116 NGKTSITQLMAQLVALQGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGA 175

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  + +S  G I+     V   +AV T ++  HL     ++    AK  +F+      +
Sbjct: 176 DLCAMEVSSHGLIQNRVAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKFSSLQSS 235

Query: 223 IFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +  N DD      L  +  A  +        +  A    +      +     +       
Sbjct: 236 LI-NLDDEVGRQWLSEEQEAKHLGFSICSAHADAASIYTQDNHLHHQGVMAMLVWPEGRA 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++    +G     N++  LG + ++  D+   + ++ +  P  GR +R+  A      T+
Sbjct: 295 KLASPLLGSFNLSNLVAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTA---NGVTI 351

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYN 400
           + + Y  +P +++ A+  L     H EG+   + G   +  +  +      AE       
Sbjct: 352 VVD-YAHSPDAIEQALKALRG---HCEGQLWCLFGCGGDRDKGKRPLMAQAAETYADKVM 407

Query: 401 ISHVWLSGFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           I+   +      A+ +     L     V      +     + +    GD+V++  K 
Sbjct: 408 ITSDNVRSESPEAIIEDILVGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKG 464


>gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
          Length = 482

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 164/462 (35%), Gaps = 42/462 (9%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G ++       + G++ DSR++ P   F A+ G   DG  FI  A++KGA  ++V  D 
Sbjct: 7   SGPALPEGGATEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLVPLDA 66

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +    ++PV    +    L  +A A       T+ A+TG+ GKT+    L    +++ 
Sbjct: 67  AVAA---NVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALG 123

Query: 135 KTYACIGSYNNH----------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +  A +G+                           A     V     E     L + R  
Sbjct: 124 EEAASLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRL- 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237
              V+   A  T I   H+   +  ++   AK  +F E +   G   LN D + +   +A
Sbjct: 183 -DGVKLRAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEA 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A G + I S G+       L   +       +E+  +GK+  V    +G   A N L
Sbjct: 242 VCWARGHR-IISVGRKGKG-IFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNAL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+        +    AL      +GR +      N     +    Y   P +++ A+
Sbjct: 300 VAAGLAIGCGGAAEKVFAALEKLTGAKGRMEEAAHLPNGASVYI---DYAHTPDALENAL 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKD 416
                I PH  GR   V G   +     +      A  L+      ++++  +  +   D
Sbjct: 357 EA---IRPHTAGRLSIVFGCGGDRDAGKRPLMGAAAAKLA----DIIYVTDDNPRSEAAD 409

Query: 417 ALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+  ++                      +L  GDV+VV  K 
Sbjct: 410 AIRAAVLKGCPGAIEIGDRAAAIETAMRALQPGDVLVVAGKG 451


>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
          Length = 490

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 163/452 (36%), Gaps = 31/452 (6%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + G++ DSR +     F A+KG   DG  F+  AV++GA  +V   D V  I 
Sbjct: 17  GNAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIVAGKDTV--IA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD   AL   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     V+
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAAMEASSHGLDQRRL--DGVK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   H+   + IEE   AK  +F  L   G   + + D  F     ++  L 
Sbjct: 193 LAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLA 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+ 
Sbjct: 253 GCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLA 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +       A++AL++     GR        +     +    Y   P +++   +VL+ +
Sbjct: 312 MVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTSV 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRS 421
            P   GR I V G   +  +  +    ++A  L+   I       S        + +  +
Sbjct: 366 RPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDNPRSEVPAQIRSEIMAAA 425

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            S +  GD +VV  K 
Sbjct: 426 PGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
 gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
          Length = 496

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 161/463 (34%), Gaps = 49/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V       + +     
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGASVLPLTDA 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +          +  ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGR--VAALEFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
           IAV+T ++  HL     +E   +AKA++F          +N DD F   L A        
Sbjct: 194 IAVMTNLSRDHLDYHGSMEAYEAAKAKLFAW-PSLRCQVVNLDDDFGRRLAADFARRPSV 252

Query: 245 ----KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + S+  ++  A    R+     +     +        +    +G     NML  
Sbjct: 253 DHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRFNLSNMLAA 312

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  L   +D  +K         GR +R       G   L+   Y   P +++  +  
Sbjct: 313 VATLLALDYALDEILKVTPQLQGPVGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L    PH  G+ + + G   +     +    ++AE L+      V ++  +         
Sbjct: 369 LR---PHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLA----DRVLVTDDNPRTEDPSRI 421

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++    R   V +          + ++    DV+V+  K 
Sbjct: 422 FDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKG 464


>gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
 gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
          Length = 493

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/478 (18%), Positives = 177/478 (37%), Gaps = 50/478 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +             N +++DSR++ P + F AI G   DG  +I  AVQ+GA   +
Sbjct: 2   LLRDLLAPWFHYAGSESFNKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASL 61

Query: 70  VNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+TD   S G         I  F ++  L AL           +  ++ +TG+ GKT+  
Sbjct: 62  VHTDDPESHGKCVDDEGKQILFFQLNRQLSALAA-QAYPLSAERLKLVGVTGTNGKTSIT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGM 169
           +++   ++ + K  A +G+  N +              +T+     + D    E   + +
Sbjct: 121 QLMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEV 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G I+     V   +AV T ++  HL     ++    AK  +F       +  +N DD
Sbjct: 181 SSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLF-NFPSLSSGLINLDD 239

Query: 230 SFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              +   A+ H  G  T +S          +     +      +    ++   G   ++ 
Sbjct: 240 EIGKQWLAE-HDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAKLVWPGGHADLC 298

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  LG + +L  D+ + +  +       GR +R+         T++ +
Sbjct: 299 SPLLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERFTTP---DDVTIVVD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++ A+  L     H +G    + G   +  +  +      AE  +      V
Sbjct: 356 -YAHTPDAIEQALKALRG---HCDGELWCLFGCGGDRDKGKRPLMAQAAEKYA----DRV 407

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         + + L            +     + ++   GD+V++  K 
Sbjct: 408 VVTSDNARSEQPDVIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKG 465


>gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured
           Prochlorococcus marinus clone HF10-88F10]
          Length = 511

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 169/485 (34%), Gaps = 50/485 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALNK---LAVAARLRSKATIIAITGSVGKTTT 122
             ++ +     I S+    +  ++D L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKERIASIDRERILVIEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFE 166
             +L   L  + K  A  G+  N       +A    D                 +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE-KTGTI 223
           +    + + R          A+ T     HL   S +E     K ++F    L+ K G  
Sbjct: 186 VSSHSIAQKRI--SGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGIC 243

Query: 224 FLNYDDSFFELLKAKSHALG--IKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L +        + T  +  + +N D F +   K     S        + 
Sbjct: 244 VLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    +G     N +  + I+  L   +    K +  F    GR ++ +   N    +
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSRS 363

Query: 341 L--IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           L  I   Y   P  +K  +  + ++    EG+ I V G   +     +     +AE LS 
Sbjct: 364 LPTIIVDYAHTPDGLKKVLQSIKKL---CEGKLITVFGCGGDRDRSKRPLMGSIAEELS- 419

Query: 399 YNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                ++++  +  +          L     R       +    +   I+      D+V+
Sbjct: 420 ---DQLFITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIK-FANKKDIVL 475

Query: 449 V--KS 451
           +  K 
Sbjct: 476 IAGKG 480


>gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454]
          Length = 510

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 153/451 (33%), Gaps = 43/451 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++   +AF A      D   +I  A+Q+GA  V+V        G   + V  +D + 
Sbjct: 35  DSRAVCAGDAFVAYAVDSADSRAYIADALQRGAAAVLVQAGGEFPGGGPVLQVPELDQLA 94

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           G +              ++ ITG+ GKTTT   +  ALS      A IG+    +   L+
Sbjct: 95  GHIASAW-YGEPSRDMLMVGITGTNGKTTTSHWVAGALSGSGTRCAIIGTLGTGLPGQLS 153

Query: 153 LARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                      +                 E+    L + R   + V   IAV T +   H
Sbjct: 154 PTGFTTPDAPQVHHSLAALRAHGASAVSMEVSSHALHQGR--VNGVAFDIAVFTNLTQDH 211

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-- 254
           L     +    +AKA +F+         +N DD     L    H        S+G +   
Sbjct: 212 LDYHKDLASYEAAKARLFDW-PGLRAAVINRDDEAGRRLIG--HLATRVRTISYGIASTR 268

Query: 255 ---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              +A       +  +  +   V       E+    +G     N+L  LG++       D
Sbjct: 269 PRGDASLHAMAIRATATGTAFTVVSDWGHAELEVGTLGLFNVANLLAVLGVLLAADVPFD 328

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A+  ++   P  GR ++      Q    L+   Y   P +++  +  L  I+    G+ 
Sbjct: 329 AALSQITRLEPVNGRMQQL-GGRPQVDEPLVVVDYAHTPDALEKTLDALRPIATQRGGKL 387

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSI 422
           + V G   E     +     +AE L+      V ++  +  +         +  A+    
Sbjct: 388 VCVFGCGGERDATKRPLMGAIAERLA----DSVIVTSDNPRSEPPLAIIGQIVSAMREPA 443

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V   E   G  L         DVV++  K 
Sbjct: 444 RVRTIEDRAGAILQAVRGASAADVVLIAGKG 474


>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
 gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
          Length = 490

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 169/479 (35%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ ++   +    +  V  ++ DSR + P  AF  I G   DGH ++    +KG
Sbjct: 1   MRLTDLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V   + A  G   + V  VDD   AL  ++ A       +  +I ITG+ GKTTT
Sbjct: 61  AKAVIVEKQVEAPDG---VTVIHVDDTRYALALMSAAYFGYPAEQLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+   L  +      IG+    IG     A              +  VD       + 
Sbjct: 118 TYMVKSILEGVGHKVGLIGTIETLIGGKAIPASNTTPESFTIHKYFKEMVDAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  +   I + T +   H+        E+    K  +F           N
Sbjct: 178 VSSQGLMLHRTAGIEFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFTQCRLG---IAN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEV 283
            DD +FE +   +         +FG S+ AD +    +  S   ++ V+         +V
Sbjct: 235 VDDRWFEDVFRNATC----RTETFGFSEKADLRATDVEHISRPGYLGVKYHVSGLMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +        +   KAL V   K     R         FTL+ 
Sbjct: 291 EIDIPGEFSVYNSLTAIAVCRHFDVPAEEIKKALKVAKVKG----RIEMVKVSDDFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ L    P   GR + V G     G  S++   ++ EV        
Sbjct: 347 D-YAHNAMSLESLLATLRDYDP---GRLVTVFGC---GGNRSRTRRFEMGEVSGKLADFT 399

Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S         A+ D +   I     +            +   +   GDV+++  K 
Sbjct: 400 VITSDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKG 458


>gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 483

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 177/476 (37%), Gaps = 57/476 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +F D++  I            +  I+ DSR      AF AIKG   DGH +I  A++K
Sbjct: 7   LISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKK 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121
           GA L++   D+    G   I    V+D   AL +++  +      K  ++A+TGS GKTT
Sbjct: 67  GASLIIHTEDVTCEEG---ISYIRVNDPRKALAQISNLIYDFPSKKMELVAVTGSNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLAR-MPVDVDFGIF 165
           T  ++   +  I    A IG+ N H+                V   LA+ +  ++     
Sbjct: 124 TSRLIAFLMGEIFGDSASIGTNNAHVGDDIIPTSNTTPDITEVNRILAKCLEKNIHHLAL 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     L + R   + +     + T ++  HL     ++    AK  +FE  + T     
Sbjct: 184 EASSHGLDQKRL--YGLDIAYGIFTNLSEEHLDYHKTMDNYFKAKMILFENAKNT---LA 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + +    ++  L  KTI      ++AD++     +   +   ++    + +E V 
Sbjct: 239 NIDDPYGK----RAKELFPKTITFAIDEESADYRAEDIVKKDGKISFKI----RGVEFVL 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + I  +   N L  +  ++ + A ++        F   +G   R+    N     +I + 
Sbjct: 291 NKIANYEIYNTLAAVACLNQMGASMEDI---GEAFKKFKGIKSRFEYIENDLGINIILD- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +   P + +A    +           IAV G     G+ +  F   +      Y +  V 
Sbjct: 347 FAHTPRAYEALFESV-----PKGSNIIAVFG---INGDRNSEFRRLIGNACGKYKVFSVL 398

Query: 406 LSGFHVLALKDALPRSI----------HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +        D +   I          +V   E  D +   I+     GD V +  
Sbjct: 399 TTDDPKFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIK-MAKPGDYVFLLG 453


>gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrospira platensis str. Paraca]
          Length = 498

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 167/462 (36%), Gaps = 47/462 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              + G++ +S +  P + F  + G   DG DF   A+  GA   +V+     +      
Sbjct: 21  DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80

Query: 80  SLSIP-VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S +IP V    D+  A  ++A            ++ +TG+ GKTTT  ++   L+++ K 
Sbjct: 81  SDTIPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKP 140

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+          +A                 +     FG+ E+    L + R L  
Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVL-- 198

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T +   HL     +++   AKA +F      G   +N DD + + L A+  
Sbjct: 199 GCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR-- 256

Query: 241 ALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            LG   ++S+  S  + D                +     S       +G +   N+L  
Sbjct: 257 -LGGDRVWSYSVSDPSTDIWADSLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG    L  D+   + +L  F    GR +R + +  Q    ++D  Y   P S++   ++
Sbjct: 316 LGAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQNITVIVD--YAHTPDSLE---NL 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------GFHV 411
           L    P   GR I V G     G+  ++    + ++ +  +   V  S           +
Sbjct: 371 LKASRPFIPGRMICVFGC---GGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRIL 427

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +P  +                +    GD V++  K 
Sbjct: 428 QDVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGKG 469


>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
 gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
          Length = 498

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/462 (19%), Positives = 166/462 (35%), Gaps = 47/462 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              + G++ +S +  P + F  + G   DG DF   A+  GA   +V+     +      
Sbjct: 21  DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80

Query: 80  SLSIP-VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S +IP V    D+  A  ++A            ++ +TG+ GKTTT  ++   LS++ + 
Sbjct: 81  SDTIPCVIPAADMTTACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLSNLDQP 140

Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180
            A +G+          +A                 +     FG+ E+    L + R L  
Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVL-- 198

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T +   HL     +++   AKA +F      G   +N DD + + L A+  
Sbjct: 199 GCPFRVAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR-- 256

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            LG    +S+  S  +AD                +     S       +G +   N+L  
Sbjct: 257 -LGSDRFWSYSVSDPSADIWADSLVYQPTGIKGVLHTPMGSASFSLPLVGQYNLSNLLAA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG    L  D+   + +L  F    GR +R + +  Q    ++D  Y   P S++   ++
Sbjct: 316 LGAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQDITVIVD--YAHTPDSLE---NL 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------GFHV 411
           L    P   GR I V G     G+  ++    + ++ +  +   V  S           +
Sbjct: 371 LKASRPFIPGRMICVFGC---GGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRIL 427

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +P  +                     GD V++  K 
Sbjct: 428 QDILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKG 469


>gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
 gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
          Length = 493

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 160/474 (33%), Gaps = 47/474 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L     G +     Q  + G+++DSR +     F A+ G    G +FI +A++ GA
Sbjct: 7   TLSQL-----GLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGA 61

Query: 66  GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++ +          +G+    +   DD   AL + A         T+IA+TG+ GKT+
Sbjct: 62  SAILTDIVGARLAATELGASDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYN----------NHIGVPLTLARMPVD-----VDFGIFE 166
               +    + +      +G+            +    P+TL R   +     V     E
Sbjct: 122 VATFVRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAME 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
                L + R     V    A  T     HL   +  E+  +AKA +F   L +     +
Sbjct: 182 ASSHGLDQRRL--DGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVI 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D      + A + A     + + G+    D  L   +  +    +     GK      
Sbjct: 240 NIDVDRGVDMAAIAKARNC-PVITVGRDSG-DLHLGNIQVDATGQVVCFMHHGKQYVRRL 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A+N+++   +V     +       L       G   R + A  +     +   
Sbjct: 298 GLIGGFQAENVMLAAALVIACGEEPPHVFDTLEHLSTVRG---RMQLAGTRDNGATVFVD 354

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++  A+  L    PH  GR IA++G   +     +          +  N   V+
Sbjct: 355 YAHTPDAIATALKALR---PHVVGRLIAIVGAGGDRDATKRPLMGQ----AAAENADVVF 407

Query: 406 LSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +          L  +             L    +L  GD +++  K 
Sbjct: 408 VTDDNPRSEDPATIRAAVLLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKG 461


>gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 216

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96
           + P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D   A  
Sbjct: 1   MTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTRQAFG 55

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+TL R+
Sbjct: 56  QLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRL 115

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK EI+ G
Sbjct: 116 NHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG 175

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQ 259
           L + G   +N D++ +   ++    +G + ++ F  +  N+DF 
Sbjct: 176 LPENGIAIMNADNNDWLNWQSI---IGDRQVWRFSPNAANSDFT 216


>gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
 gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
          Length = 488

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 164/489 (33%), Gaps = 67/489 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A
Sbjct: 4   LTALFNLPELK-----------NDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSA 52

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114
           +  GA  VV  T++ +   ++    ++PV     +   L+ LA           T++  T
Sbjct: 53  LHSGASAVVSETELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGAT 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT  ++L      +    A +G+  N +   +  A+                   
Sbjct: 113 GTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLATFKHA 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+    L + R     +    A+ T +   HL     +E  A+AK  +F  L+
Sbjct: 173 GADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD 230

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQ 269
            T    +N DD    + L     A+ +        S NADF        +        + 
Sbjct: 231 -TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKG 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +  +    +  +    IG     N+L+ +  +      ++  +          G   R
Sbjct: 282 ADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCG---R 338

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+I + Y   P +++ A+    +   H +G    + G   +     +   
Sbjct: 339 MEMIQYPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLM 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +AE  +   I           +     +         V           F   S V+ 
Sbjct: 395 AQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEN 454

Query: 445 DVVVV--KS 451
           DV+++  K 
Sbjct: 455 DVILIAGKG 463


>gi|309806975|ref|ZP_07700957.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166595|gb|EFO68792.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 270

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 14/274 (5%)

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           LS     ++IA AK EI + L++ G    N D+    LL+A++  L      +FG +   
Sbjct: 6   LSFLVTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQTLNQLQA-TFGFNSTD 61

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 +      +   +      ++     IG H   N L  + +            +A
Sbjct: 62  TIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQA 119

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+     GRRIAVLG
Sbjct: 120 LANFVPTANRMQWEKGDLGE---AIMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLG 176

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431
           DM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       ++H +  + MD
Sbjct: 177 DMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHMD 236

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   ++  +   D+V++K S+     +++  LL
Sbjct: 237 RMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 270


>gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
 gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
          Length = 493

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 165/462 (35%), Gaps = 52/462 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR +     F AI G   DG  FI  A+Q+GA  V+       + G++  
Sbjct: 22  SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TL+ +      +   E+     G I+     + 
Sbjct: 142 MGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSH--GLIQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SH 240
               V T ++  HL     +EE A+AK  +F    + G   +N DD        +   + 
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLNNAL 258

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ +K    F +S                  +E   +     +    IG   A N+++  
Sbjct: 259 AVSLKPTTEFSQS----VYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAF 314

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L       +       P  GR + ++   N          Y   P +++ A+  L
Sbjct: 315 TTLLSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVV----DYAHTPDALEKALQAL 370

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
                H +G   A+ G   +     +    ++AE L       V L+  +  +   AL  
Sbjct: 371 R---VHCQGELWAIFGCGGDRDAGKRPMMAEIAERLG----DKVVLTDDNPRSEDPALIM 423

Query: 420 RSIHVHYSETMDGLFL--------FIQSSLVDGDVVVV--KS 451
           + + V  ++  + +          +        D++++  K 
Sbjct: 424 KDMLVGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465


>gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
          Length = 507

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/460 (20%), Positives = 154/460 (33%), Gaps = 49/460 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             +++ +   S ++AP   F  + G   DGH F   A+ +GA  + V       +    +
Sbjct: 26  NPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFAASALDRGAVALCVER--ALDLPVPQV 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V   +G L  + +      + T + ITG+ GK+TT  ML   L S       +G+ 
Sbjct: 84  VVPDVRRFMGRLAAV-LYGEPAQRLTHVGITGTNGKSTTTYMLRSVLQSAGVKTGLLGTI 142

Query: 144 NNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             H                 +   LARM  +     + E     L + R      R    
Sbjct: 143 VYHDGDKELEADRTTPENTDIQSFLARMVSNGCGACVMETSSHGLEQGRI--EGCRFDRG 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++P HL      E    AK  +F E ++ +     N DD++   L        +  
Sbjct: 201 GFTNLSPEHLDYHGTEEAYFQAKKLLFEEYMKPSWKGASNRDDAYGRRLLEAYPENLVG- 259

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVS 304
            Y+  + +  D              +++ L    +  EV    IG +  +N L    +  
Sbjct: 260 -YTREEPRPGDLGATLKSFDLTGMCLDLTLPDGRVLPEVHLPLIGTYNVENALACAALAR 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D +T  + L+      GR +RY      G  T + + Y   P  ++  +S L  + 
Sbjct: 319 TLDIDGETIRRGLASMPQVPGRLERYSLP---GGVTCVID-YAHTPDGLEKVLSTLRHV- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--------SGFHVLALKD 416
               G+  +V G     GE + S    L E         V           G     +  
Sbjct: 374 --CRGQLWSVFG---HGGERTTSHRKALGEHAGRLADRVVVTMDNPRSEDPGAIAEQIVG 428

Query: 417 ALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S      E          F       GDVV+V  K 
Sbjct: 429 GIQGSGAATPWEVRLDRGEAIRFALDGAQPGDVVLVSGKG 468


>gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
 gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 489

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 167/471 (35%), Gaps = 45/471 (9%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  DLL  I GH+ +       +  I+ DSR + P   F A+ G   DG  FI  A+ KG
Sbjct: 10  TMADLLALIAGHARLERGGSVPIAAITSDSRKVGPGTLFVAVPGTKADGARFIPDALAKG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V++  +   +   + +P+    DV  +L   A     R   TI+A+TG+ GKT+  E
Sbjct: 70  AAAVLM--EPTGAPPDMDVPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTSVAE 127

Query: 125 MLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVDVDFGIFELGM 169
            +    + +    A +G+                 + + +  TL R+          L  
Sbjct: 128 FVRQIWAHLGIPAAYMGTLGLIAPGESSYGGLTSPDPVDLHATLDRL-AGAGITHMALEA 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYD 228
           S  G  +     VR      T +   HL     +E    AK  +F  L   G       D
Sbjct: 187 SSHGLDQRRLEGVRLAAGGFTNLGRDHLDYHPTVEAYFHAKLRLFTELMPDGAPAIAALD 246

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +     A +   G+    +F      D ++ +    +E +   ++   +  E++   +
Sbjct: 247 APYGATTLAFARTRGLP---TFAIGATGDLKVTEV--VAEGTSQRIRFADRP-EILLPLV 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N L+   +V+     +D A+ AL       GR +R            +   Y  
Sbjct: 301 GRFQADNALLAASLVAAGGVPLDDALSALPHLKGVPGRLERI----GHDPARPVFVDYAH 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  L   +    GR IA+ G   +     +     +A          V ++ 
Sbjct: 357 KPEALETVLDTLRAATA---GRLIALFGCGGDRDRGKRPLMGAIA----AAKADVVIVTD 409

Query: 409 FHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +        + L  +         +       + +  GDV++V  K 
Sbjct: 410 DNPRSEDPSAIRAEILAAAPGALEIGAREEAIRAGVAMMGAGDVLLVAGKG 460


>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 491

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 151/463 (32%), Gaps = 51/463 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+  V G++ ++    P   F A++G   DGH FI  A ++GA  V+   + + +    
Sbjct: 18  TPEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLG--EGLPTGVQT 75

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++P   V D   AL  LA            ++ +TG+ GKTTT  +    L +       
Sbjct: 76  TLPYLQVPDARAALADLAAELHGHPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAGLPTGL 135

Query: 140 IGSYNNHIGVPL-----------------TLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180
           + +    +                     ++ R  +       + E     L   R    
Sbjct: 136 LSTAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLEASSHALALHR--VR 193

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V    A+ T +   HL     +E   + K  + E         LN DD + E L+    
Sbjct: 194 GVAWDAAIWTHLTREHLDFHGSVEGYFADKRRLIEAAP---FAVLNADDPWTEQLR---- 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  + +    +   AD+Q  K +Q        V             IG     N L  +
Sbjct: 247 GVAPQEVTYSAEGGAADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVANALAAM 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L A  +     L+ F    GR +  R         ++D  +   P S++ A+  L
Sbjct: 307 AAAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVD--FAHTPPSLEKALQTL 364

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------VL 412
              +    G+   V+G     G         L EV        ++    H        + 
Sbjct: 365 RSTT---GGQLWVVIGSAG--GNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILA 419

Query: 413 ALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           A++       H ++           +  +    GD V++  K 
Sbjct: 420 AMERGAREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKG 462


>gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL001PA1]
 gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA2]
 gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA3]
 gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA4]
 gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL060PA1]
 gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA2]
 gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 499

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 154/456 (33%), Gaps = 50/456 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D         +P+ 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEAGVPII 75

Query: 87  GVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD     A+    V        T+  ITG+ GKTTT  ++   L +       IG+  
Sbjct: 76  VVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVGTIGTIG 135

Query: 145 NHIGVP-------------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +                      L  A         + E+    L   R         
Sbjct: 136 FRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQR--VDGTCFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A G+K
Sbjct: 194 VVAFTNLGRDHLDFHNTLDNYFNAKARLFTP-DLARVGVINVDDPRGRQLVERMQANGVK 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +    + +D+Q+  W      +  +V        +     G    +N  M L ++  
Sbjct: 253 AVTT-SIHQPSDYQVTSWHAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAMLEA 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L       GR +R   A +     +    +   P ++ +A+        
Sbjct: 312 AGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALV---DFAHTPQAIASALDAARS--S 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR IAVLG     G+   +    + ++ +      V ++           ++ A+  
Sbjct: 366 VDGGRLIAVLGA---GGDRDVAKRGPMGQIAAER-ADIVIVTDDNPRTEDPAVIRAAVLE 421

Query: 421 SIHVHYSETM---------DGLFLFIQSSLVDGDVV 447
             H    + +         + +   ++     GDV+
Sbjct: 422 GAHEAAGDGVIVIDGGRRREAINEALR-MAEAGDVI 456


>gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
          Length = 488

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 96/450 (21%), Positives = 164/450 (36%), Gaps = 44/450 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           IDSR + P + F A+ G    G DF   A+++GA  VV     + +  S    V   DD 
Sbjct: 26  IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAVVAAPGTLPATLSQQNCVVH-DDP 84

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             AL  LA A    S+    +I +TG+ GKTT   +L  AL  + +    IG+  N    
Sbjct: 85  REALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIANRWPG 144

Query: 150 ---------------PLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                             L+RM  D VD    E+    L +    T  +R   AV+T ++
Sbjct: 145 HEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQ--RRTAGLRFSAAVLTNVS 202

Query: 194 PAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
             HL     +E   +AK+ +F    L + G   +N DD +   L+         +++S  
Sbjct: 203 QDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSLHSEK 262

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                  +        +   +    QG+   +    +G H   N++     +  L     
Sbjct: 263 AQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANLMAAQATLLALGFGPA 322

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A   LS   P  GR +R   A     F      Y   P +++  +  ++ +  +   R 
Sbjct: 323 DAA-VLSDAPPVPGRLERVENAAGLDIFV----DYAHTPDALENVLQAMTALDGN---RL 374

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIH 423
           + V G     G+  ++  + + + ++ Y    +  S           +  ++  L     
Sbjct: 375 LVVFGC---GGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPR 431

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V                +V GD++VV  K 
Sbjct: 432 VVEESDRKAAIALALQEMVPGDILVVTGKG 461


>gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 516

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 136/371 (36%), Gaps = 34/371 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV- 85
           V  I+ DSR +     F AI G   DG  F+  A+  GA  +V    +     +L   V 
Sbjct: 43  VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102

Query: 86  ---FGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                V       A    A+         ++ +TG+ GKT+T  ML      +      I
Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKHLRLVGVTGTNGKTSTATMLHRLFERLGYKSGLI 162

Query: 141 GSYNNHI-----------GVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPH 185
           G+  N I             P+ LA++   +       +F    SH    R +  L    
Sbjct: 163 GTVENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHVFMEVSSHAAHQRRIGSL-EFV 221

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             + T +   HL     ++E   AK   F+ L       +N DD    ++   + A    
Sbjct: 222 GGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPNAFALVNADDRNGSVMLQNTSAKK-- 279

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y++G    ADF+ +  +     +  E+ L  +S+      +G   A N+ +      +
Sbjct: 280 --YTYGLKSFADFKAKVVEGDFRGT--ELLLNDRSV--WIPLVGAFNAYNITLVYAAARL 333

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D++  +   ++   +   G R+      G   ++D  Y   P ++   +  +  + P
Sbjct: 334 LLPDLEQDVLLQALSTIETAEG-RFEVISEGGRIGIVD--YAHTPDALIKVLETIRPLVP 390

Query: 366 HGEGRRIAVLG 376
              GR I V+G
Sbjct: 391 Q-GGRVITVVG 400


>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CFN 42]
 gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CFN 42]
          Length = 506

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 169/463 (36%), Gaps = 44/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR++ P  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 34  LEAQLEGPAGLLDISGLSSDSRNVEPGNAFVAVTGTKADGAGFIADAAGRGAAVAIASQP 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +       +IPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  V-----DAAIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
               A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               V+   A  T +   H+     +E   +AK  +F+ L   G    +  DD +     
Sbjct: 209 --DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSPQ-A 265

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++ A     + + G+  +    L++ +    +   E+ +  +  EV     G     N 
Sbjct: 266 VQAAADAGHDVRTVGRKGD-YLTLKRVEHFRHKQTAEIHIGDEIFEVDIPLAGDFQVANA 324

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+      +   A+ AL       G   R     +     L    Y   P +++  
Sbjct: 325 LVAAGLAMSTGVEPKAAMAALEKLVGASG---RLELVGHTKDGALAYVDYAHKPDALE-- 379

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +VL+ + P   GR + V G     G+  +     + E+        V ++  +  + + 
Sbjct: 380 -NVLNSVRPFTTGRVVVVFGC---GGDRDRGKRPIMGEIACRL-ADVVIVTDDNPRSEEP 434

Query: 417 ALPRSIHVHYSETMDGL---FLFIQSS---LVDGDVVVV--KS 451
           A  R+  +  +     +      I+ +   L  GD ++V  K 
Sbjct: 435 AAIRAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 477


>gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 511

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/488 (18%), Positives = 166/488 (34%), Gaps = 56/488 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL          +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV-DDVLGALNK---LAVAARLRSKATIIAITGSVGKTTT 122
             ++       IGS+      V DD L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGPAAKQKIGSIDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFE 166
             +L   L  + K  A  G+  N       +A    D                 +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223
           +    + + R          AV T +   HL   S +E     K ++F      EK G  
Sbjct: 186 VSSHSIAQKRI--SGCEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGIS 243

Query: 224 FLNYDDSFFELLKAKSHALG--IKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L +        + T  +  + KN D F +   K     S        + 
Sbjct: 244 VLNHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKEK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GF 338
           +++    +G     N +  + I+  L   +    K +  F    GR ++     +     
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSRS 363

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +   Y   P  +K  +  + ++    +G+ I V G   +     +     +AE  S 
Sbjct: 364 LPTVIVDYAHTPDGLKKVLQSIKKL---CKGKLITVFGCGGDRDLGKRPLMGSIAEEFS- 419

Query: 399 YNISHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                ++++  +  +             +K     +I +   + ++    F        D
Sbjct: 420 ---DQLFITSDNPRSEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKE----D 472

Query: 446 VVVV--KS 451
           +V++  K 
Sbjct: 473 IVLIAGKG 480


>gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
 gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
          Length = 505

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 147/442 (33%), Gaps = 47/442 (10%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
              P + F      H D       A+++GA  ++        +  L+IP   V D   AL
Sbjct: 42  DCEPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQ-----LLPLAIPQAIVPDAREAL 96

Query: 96  NKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH------- 146
             ++ A      +K   I ITGS GKT T  ++   L +  +    I S           
Sbjct: 97  GIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSLGYSDSIEQVS 156

Query: 147 --------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                     +   ++RM  +     + E+    L +    T      IAV+T +   H 
Sbjct: 157 TKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQ--RRTAGTSLDIAVLTNLRNVHT 214

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           S         +AK  IF  L+  G   +N DD     L             + G    AD
Sbjct: 215 SEHGSAANYLAAKKRIFSHLKPGGLAIINADDHRSRQLLESLAC----PTLTVGLHAEAD 270

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
              R   +   +    +    ++++V    IG     N L  + +   L  ++ T ++ +
Sbjct: 271 ISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLGIELSTIVRGI 330

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                  GR +R       G   +I ++  + P ++  A+    +++   +GR + V   
Sbjct: 331 ENVTYLPGRMQRLEVGQEFG---VIVDA-ASTPDTLAIALKTARRVT---KGRVLLVFSA 383

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSET 429
               GE ++     LA V        V  SG             L D   R    H+  T
Sbjct: 384 ---SGEKNRDARPMLARVAEQGADLAVITSGNPRRESPREITHQLLDGFHRPAKAHFIPT 440

Query: 430 MDGLFLFIQSSLVDGDVVVVKS 451
                 +       GD V++  
Sbjct: 441 RAEAIRWALGHAQPGDCVLICG 462


>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
           ligase mure [Rhodococcus equi 103S]
 gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
           6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
          Length = 501

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 155/475 (32%), Gaps = 51/475 (10%)

Query: 6   TFHDLLQAI--QGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +++  +   GH +   P   +  + G+  DSR + P + + A+ G  + G DF   A
Sbjct: 14  TLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVG 118
             +GA  ++ +        S  +P   VDD   AL            +   +  +TG+ G
Sbjct: 74  SARGAVAMLSDR------PSDIVPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNG 127

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDF 162
           KT+T  +L  AL +       +             A                 +   VD 
Sbjct: 128 KTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPEACELQQSFVEFVEEGVDA 187

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L E R      R  + V T +A  HL     +E   +AKA +F        
Sbjct: 188 VAMEVSSHGLAEHRI--DGSRFDVGVFTNLARDHLDYHPDMEAYYTAKARLFGRDLCERA 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                DD +   L  +          +F  +   AD      +     S   +  +G+ +
Sbjct: 246 AV-CIDDDYGRRLAGEVAVPH----LTFSARDPGADVYATTVRAQRWGSTFTLHHRGERV 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G H   N +  L  +S+   D+  A+  +       GR +R      Q F  L
Sbjct: 301 PVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLERVDV--GQPFLAL 358

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAE 394
           +D  Y  N A        L  ++P   GR + VLG   E           + + + ++  
Sbjct: 359 VD--YVHNTAGQHRLFPYLRSVTP---GRIVVVLGATGERDPGKRAPLGFTAARYAEVVV 413

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V      S         +A       +  V                   GD V++
Sbjct: 414 VTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTVLL 468


>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
 gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
          Length = 498

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 162/480 (33%), Gaps = 51/480 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+   I   +        V  +++DSR   P   F A++G   DGH +I  A+Q+G
Sbjct: 7   MQLKDIFYKIPLLATSGSMNTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYIETAIQQG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  ++       +     +    V +    +         +   K  +I +TG+ GKT+ 
Sbjct: 67  ATAILCEEIPAETNPD--VAYIRVQNSARTMGLVAANFYDQPSQKLKLIGVTGTNGKTSV 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VPLT-----------LARMPVDVDFGIFELG 168
             +L     ++      + +  N I    +P T           L    +        + 
Sbjct: 125 ATLLFRLFRALGYRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLLTKMLAHGCTHVFME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++     +     + T I   HL      +    AK   F+ L  +     N D
Sbjct: 185 VSSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKKGFFDQLPASAFALTNVD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     A F+ +        S   + +     EV    I
Sbjct: 245 DKRGLVMLQNTVARKE----TYSLQTLASFKGKILAD----SLFGLNMLIDEREVWFKLI 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L  D    +  LS   P  G   R+   ++      I + Y  
Sbjct: 297 GQFNAYNLLSVYGTAILLGEDPTEVLTMLSGITPPPG---RFEQVVSDDKIVGIVD-YAH 352

Query: 349 NPASMKAAISVLSQIS----PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            P +++  +  ++++          + I V+G         +    D+A  LS    + V
Sbjct: 353 TPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPIMADIACRLS----NRV 408

Query: 405 WLSGFH------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSL---VDGDVVVV--KS 451
            L+  +      +  L+        V + +  T++     I+ ++      D+++V  K 
Sbjct: 409 ILTSDNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELAKPHDIILVAGKG 468


>gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
 gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
          Length = 483

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 177/458 (38%), Gaps = 48/458 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +V +    GI  DSR I     F A++G   DGH++I  AV+ GA  ++V+  + A    
Sbjct: 16  VVKEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIEAVFP- 74

Query: 81  LSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +    + D+   L           + K  II ITG+ GKTTT  ++   L S     A
Sbjct: 75  --VKYIWIKDLRRKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSD--KTA 130

Query: 139 CIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            IG+    IG  +  A                 +   +++ + E+    L   R    ++
Sbjct: 131 RIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGR--VDML 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTIFLNYDDSFFELLKAKSH 240
              +++ T +   HL     +E+   AK ++F  ++K       +N DD + + L ++  
Sbjct: 189 EFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRLSSEFG 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S+G       + +  +   +   +E+ +   S ++    +G +   N+L  L
Sbjct: 249 G------ISYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNVLGAL 302

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I  +L  + D  +  +       G   RY        FT+I + Y+    +++  +  +
Sbjct: 303 SIALLLGIERDIILDKIKELKGAPG---RYELVNCGQDFTVIVD-YSHTGDALENILKSI 358

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH--VLALK 415
           +++    +G+ I V G   +     +S   ++AE LS   I    +      H  V  + 
Sbjct: 359 NELK---KGKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVL 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    H+   E  D             D++++  K 
Sbjct: 416 EGMKGKNHI-VEEDRDIAISKAVKLAEAKDIILIAGKG 452


>gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
 gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
          Length = 508

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 175/479 (36%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDVDFY--SSNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + + L         I +                        +   L+ M   +  + I
Sbjct: 127 YHIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSNMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDFYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDFTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
               + +G    +N++  L  +  IL +D+   +  L      +GR         Q F  
Sbjct: 301 FANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIVLCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
          Length = 476

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 172/476 (36%), Gaps = 56/476 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +   L + +    + +V +     +S +S+ I   + F A+ G   DGH++I  A++ G
Sbjct: 1   MSIQKLFKNVDYRVLTLVEEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A +++   D         I V  V ++   L  ++       ++K  IIA+T     T  
Sbjct: 61  AKMIIAERDDYPYPKD--ITVVLVKNLRDNLGYISSNFYNFPQNKLKIIAVT----GTNG 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
           K   T  L SI K  A IG+    I      A+                +  +V++ + E
Sbjct: 115 KTTTTYILESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLME 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R    ++    A+ T +   HL     +E+   AKA I   L+    + +N
Sbjct: 175 VSSHALCQGR--VKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPNARLIIN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   L   S         SF   + A       +   +   + +    K       
Sbjct: 233 KDDKYCNRLLNVSD--------SFSLKEVATINGEVLEYTLKGMKVRISKDDKKYIFTTK 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G +  QN+L  +     L  D+D  I ++   +   G   R+    N     ++ + Y
Sbjct: 285 LMGEYNLQNLLGAILSAYNLGIDLDEIINSIQNINSIAG---RFEIIDNDKDVMVVVD-Y 340

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                 ++  +  LS +  +   R + + G     G+  ++    +A+    Y+   ++L
Sbjct: 341 AHTADGLENILKTLSIMKKN---RLVTLFGA---GGDRDKTKRAKMAQAACKYS-DLIFL 393

Query: 407 SGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++  +  SI        +        +L   D++++  K 
Sbjct: 394 TSDNPRTEDPEMILNDVEKGMNSSIPYFKICDREMAIKNSIQTLQKNDILLIAGKG 449


>gi|254805545|ref|YP_003083766.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
 gi|254669087|emb|CBA07638.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
          Length = 506

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 159/430 (36%), Gaps = 55/430 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV     +L  L +             IAI G+
Sbjct: 101 NGANVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG---------IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +    L +     T+   G  N       T AR+    ++ + E   S    
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAEADESDASF 206

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +        P ++V+T I   H+  +   +E++  A  +    +   G  FL  D     
Sbjct: 207 LHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVR 261

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
            +  K      K   ++G    AD      +    Q    V +Q K     S EVV +  
Sbjct: 262 AILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMP 317

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYN 347
           G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L+ + Y 
Sbjct: 318 GRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYG 377

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHV 404
            +P  M A +S      P     +  VL         ++    D  +VL+  +    + V
Sbjct: 378 HHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEV 433

Query: 405 WLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S  
Sbjct: 434 YAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSIN 493

Query: 457 FYRLINLLLE 466
             R+   LLE
Sbjct: 494 --RVPAALLE 501


>gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CNPAF512]
          Length = 486

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 168/463 (36%), Gaps = 44/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G V    ++G+S DSR +AP  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 14  LEAQLEGPVGLLDISGLSSDSRKVAPGNAFVAVAGTKADGAGFIADAAARGAVVAIASQP 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +       +IPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 74  V-----DAAIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 128

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
               A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 129 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 188

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               V+   A  T +   H+     +E   +AK  +F+ L   G    +  DD +     
Sbjct: 189 --DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAV 246

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +   G   + + G+  +    L++ +    +   E+ +  +  EV     G     N 
Sbjct: 247 KAAADAG-HDVRTVGRKGD-YLTLKRVEHFRHKQTAEIHIGDEIFEVDIPLAGDFQVANA 304

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+          A+ AL       G   R     +     L    Y   P +++  
Sbjct: 305 LVAAGLAMSTGVAPKAAMAALEKLVGASG---RLELVGHTKDGALAYVDYAHKPDALE-- 359

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +VL+ + P   GR + V G     G+  +     + E+        V ++  +  + + 
Sbjct: 360 -NVLNSVRPFTTGRVVVVFGC---GGDRDRGKRPIMGEIACRL-ADVVIVTDDNPRSEEP 414

Query: 417 ALPRSIHVHYSETMDGL---FLFIQSS---LVDGDVVVV--KS 451
           A  RS  +  +     +      I+ +   L  GD ++V  K 
Sbjct: 415 AAIRSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 457


>gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
          Length = 479

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 51/471 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ +Q   +         G+  DSR I     F A++G   DGH FI  A++KGA L
Sbjct: 2   EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V+ ++    G   + +  +   LG L         +    I+ +TG+ GKTTT  +L 
Sbjct: 62  IIVSKEVPCQKGIGYVLIKNLRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLE 120

Query: 128 IALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSH 171
             L    +  A  G+    I              L L RM        +++ I E+    
Sbjct: 121 QLLGE--EKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEVSSHA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R   +++    A+ T +   HL     +E+   AK ++F  L       LN DD +
Sbjct: 179 LELGR--VNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVLNVDDEY 236

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L+ + H        S+G +K A+ Q +       +  +E+ L GK  E     +G  
Sbjct: 237 GRRLQEEFHG------ISYG-TKQAEVQGKILGFEGGKEKVELSLFGKKKECKIQILGGF 289

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L ++ +V  L    +     + +     GR +   C   Q +  +ID  Y     
Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDC--GQDYMVVID--YAHTGD 345

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++  +  + +I      + I + G   +     +    ++AE  S      V L+  + 
Sbjct: 346 ALENILQAIQEIKTK---KIITIFGCGGDRDPRKRPIMAEIAERYS----DFVVLTSDNP 398

Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +K    +  H+   E  + +   I+ +   GD+V++  K 
Sbjct: 399 RTENPESILEEVKGGFTKENHICVLERAEAIAEGIRRA-EKGDIVLIAGKG 448


>gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
 gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
          Length = 487

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+ +GA  V       + +    +
Sbjct: 15  DPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQGASVLPITEV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++G L+++          +  ++ +TG+ GKT+  ++L  AL ++ +    IG
Sbjct: 75  PLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQALDALGQRCGLIG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSHALEQGR--VAALDFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T ++  HL     +    +AKA++F          +N DD F   L     A G  
Sbjct: 193 IAVMTNLSRDHLDYHGSMGAYEAAKAKLFAW-SSLRARVVNLDDDFGRRLAE---AHGQS 248

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + S+  +   A    ++     +     +        +    +G     NML  +  + 
Sbjct: 249 RLISYSLQDPAATLFCKQAAFNDDGVRAVIVTPQGEHALRSRLLGRFNLSNMLAAVATLL 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K     H   GR +R       G   L+   Y   P +++  +  L    
Sbjct: 309 ALDYPLDEILKVTPQLHGPIGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEALR--- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH  G+ + + G   +     +     +AE L+      V ++  +            ++
Sbjct: 362 PHAHGKLLCLFGCGGDRDSGKRPLMAAVAERLA----DRVLVTDDNPRTEDPLRIFDDIR 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   + +          + ++    DV+V+  K 
Sbjct: 418 PGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKG 455


>gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 476

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 164/467 (35%), Gaps = 65/467 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I   S  I     + GIS DSR I     F A KG  +DGH +I  A++ G
Sbjct: 1   MKIEKILKEISYISKNIQNDKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A  ++   D +       I    V D   AL K++            +I +TG+ GKTTT
Sbjct: 61  ANTIIYTNDDIN--FESGINYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGS-----YNNHIGVPLTLARMP-----------VDVDFGIFE 166
             ++   L+ +    A IG+      N  +    T   +             ++   + E
Sbjct: 119 ANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILIKAKKENIKNAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L   R   + +     V T ++  H+     ++    AK  +    +K     +N
Sbjct: 179 TSSHGLYLKRN--YGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMILLNNSKKQ---VVN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + +  K        K   +   ++++ ++ +  K+        V      ++   +
Sbjct: 234 LDDDYGKRAKEI-----FKDALTISINEDSKYRAKNIKRVDLGLEFTVN----GVKFHLN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  + I + L   ++   KAL  F   + R +     L       I   +
Sbjct: 285 RFGQYDIYNSLCAIAIANDLGYKLEEISKALEDFTGVKSRFEFIENKLGIN----IVVDF 340

Query: 347 NANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              P + +     L       + ++I AV G     G+ +      + ++ + Y +  V 
Sbjct: 341 AHTPEAFENLFKDL------PKDKKIYAVYG---INGDRTYDIRKAVGKISAKYGVFSVI 391

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--GDVVVVK 450
            +                    +T + +   I+  + +  G+ +++K
Sbjct: 392 TTDDP---------------KFDTFENISQQIKEGVDENKGECIIIK 423


>gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 511

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 168/485 (34%), Gaps = 50/485 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  + + A++ GA 
Sbjct: 6   LHRLLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTT 122
             ++ +     IGS+    +  ++D L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKQKIGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFE 166
             +L   L  + K  A  G+  N       +A    D                 +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE-KTGTI 223
           +    + + R          A+ T +   HL   S +E     K ++F    L+ K G  
Sbjct: 186 VSSHSIAQNRI--SGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGIS 243

Query: 224 FLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L     K  +L    I       +  F +   +     S        + 
Sbjct: 244 VLNHDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKEK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GF 338
           +++    +G     N +  + I+  L   +    K +  F    GR ++     N     
Sbjct: 304 IKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNNDVSRS 363

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++   Y   P  +K  +  + ++    +G+ I V G   +     +     +AE  S 
Sbjct: 364 LPIVIIDYAHTPDGLKKVLQSIKKL---CKGKLITVFGCGGDRDRSKRPLMGSIAEEFS- 419

Query: 399 YNISHVWLSGFHVLA------LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               HV+++  +  +      + D L     R       +    +   I+      D+V+
Sbjct: 420 ---DHVFITSDNPRSEEPQQIVNDILMGIEKREKITFDIDRFKAINESIK-FANKEDIVL 475

Query: 449 V--KS 451
           +  K 
Sbjct: 476 IAGKG 480


>gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
 gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
          Length = 509

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 157/461 (34%), Gaps = 49/461 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSL 81
              + G+S+DSRSIA  E F A+KG   DG  FI  A+ +GA  VV +   D   S    
Sbjct: 30  NPEITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDFDFSSVPN 89

Query: 82  SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            IP+  V ++   L+ +             +I +TG+ GKTT  ++L    + + +  A 
Sbjct: 90  DIPLVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAAS 149

Query: 140 IGSYNNH----------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLV 182
           IG+                    I     LA++      F   E+    L + R     V
Sbjct: 150 IGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGATFVAMEVSSHALEQGR--VDAV 207

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               AV T I+  HL      E   +AK+ +F   +      +N DDS     +A S A 
Sbjct: 208 NFEGAVFTNISRDHLDYHGTFEHYIAAKSRLFTF-DALRFAVINGDDSAS---RALSAAS 263

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++ + +G         +      E    ++        +    IG     N+L  +  
Sbjct: 264 TAESSFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANIQSCLIGNFNILNLLAVITT 323

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +    + +    P  GR +R       G    +   Y   P +++ A+  L  
Sbjct: 324 ACAAGYSLPAVAEQVQHLQPARGRMQRIVV---DGGDVTVCVDYAHTPDALEKALLALRA 380

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
            + +       V G     G+  +     +  + +  +   V ++  +         + D
Sbjct: 381 QAAND---VWVVFGC---GGDRDKGKRAQMGRIAAE-HADAVVVTSDNPRTETPACIIDD 433

Query: 417 ALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L         V   E       F       GD V++  K 
Sbjct: 434 VLSGIPASDKRVTNFEDRSAAIEFAILQAKSGDTVLIAGKG 474


>gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
 gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
          Length = 489

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 160/460 (34%), Gaps = 44/460 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+  +  + +D+R + P   F A+KG   DG  F+  A QKGA  ++ +         L
Sbjct: 16  APEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAILFDNSDGFVPSEL 75

Query: 82  SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM---LTIALSSIKKT 136
           SIP   V  +   +++LA         K  ++ +TG+ GK+T  ++    T         
Sbjct: 76  SIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQLIANWTELFGQRGGV 135

Query: 137 YACIGS------------YNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
              +G+              + I +   LAR   + VD    E+     G ++     ++
Sbjct: 136 LGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVSSH--GLVQHRVSALQ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHAL 242
              AV T ++  HL     ++  A AK  IF+         LN DD+   E L     A+
Sbjct: 194 FAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPE-CCILNADDATAREWLLQMPQAV 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                    +           K   +   + +        +    +G     N+L  L +
Sbjct: 253 VYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLLGKFNVSNLLAALAV 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +L  D +T  +  S   P  GR + +          L+   Y   P  ++ A+    Q
Sbjct: 313 MLVLQYDFETLCQTASRLQPVTGRMECF----GNQDQPLVVVDYAHTPDGLEKALQAARQ 368

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413
              H  G    + G     G+  +     +A +   +    + L+  +         +  
Sbjct: 369 ---HCHGHLFCLFGC---GGDRDRGKRPQMAAIAEQW-ADTLILTDDNPRTEDPAAIIAD 421

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L +    H   +         +  V GD++++  K 
Sbjct: 422 MCAGLQKPEQAHIEHSRPKAIQLALAQAVPGDIILLAGKG 461


>gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
 gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
          Length = 493

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 164/459 (35%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A+++GA   +     V + G++  
Sbjct: 22  SVLVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A 
Sbjct: 82  IDDVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                + +  TL+ +      +   E+    L + R     + 
Sbjct: 142 MGTTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGR--VKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +      +N DD       ++     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCE-RAIINVDDEVGHQWASQLSNAI 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++ +  + ++A     +         ++   +  S ++    IG   A N+++    +
Sbjct: 259 AVSLKANTEFESA-IWATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +    ++      P  GR + ++              Y   P +++ A+  L   
Sbjct: 318 LSLGKEKQALLETAGQLQPVLGRMELFQTEDRAKVVV----DYAHTPDALEKALQALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
             H EG+  A+ G   +     +    ++AE L       V L+  +  +         +
Sbjct: 372 -VHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLG----DRVVLTDDNPRSEDPVQIVKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKG 465


>gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
          Length = 463

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 170/454 (37%), Gaps = 54/454 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S+ +     F AIKG   DGH+F+  A+ +GA  V+V  D    +G     + 
Sbjct: 7   VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKD----VGITDNRIV 62

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL +L      +   K  +I ITG+ GKTTT  ++   L++       +G+  
Sbjct: 63  KVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLVGTIY 122

Query: 145 NHIGV----------------PLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +                    TL +M  D     + E+    L + R        HI 
Sbjct: 123 YRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWA--THFHIV 180

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T ++  HL     +EE   AK  +F+         +N DD + + +  +     I   
Sbjct: 181 GFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYE-YAVVNSDDEYGKRIVRELKGRAI--- 236

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G  +  DF++  +    E S ++V  +GK+ +   + +G   A N+ + +    ++ 
Sbjct: 237 -TYG--REGDFKILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLVG 293

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +V                G R+      GF  ++D  Y   P +++   +VL  I    
Sbjct: 294 IEVQAI---EEGLKKVYVPG-RFETYRGDGFLVIVD--YAHTPDALE---NVLKSIRRLS 344

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALP 419
            GR I + G     G   ++    +  V   ++   V  S           +  +   + 
Sbjct: 345 TGRVITLFGA---GGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVK 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  V   E          S   +GD V++  K 
Sbjct: 402 DTSKVLVEEDRKKAIKMAISLAEEGDTVLIAGKG 435


>gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 515

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 160/481 (33%), Gaps = 49/481 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H     P+   +  G + D+  + P   F A+ G    G   +  A+ 
Sbjct: 1   MKLSELLAGQNHHIRQGDPEKALITAGTAFDADRVVPGSLFIAVPGHLEGGPGAVAPALA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKT 120
           +GA  VVV    V    +  + V  V D     A+           +  ++AITG+ GKT
Sbjct: 61  RGAAAVVVEDGCVVPTAAGDVCVVQVPDARRTAAVAASRYFGEPGRRMDMVAITGTNGKT 120

Query: 121 TTKEMLTIALS-SIKKTYACIGSYNNHIGVPL-----------------TLARMPVDVDF 162
           +   M+  AL  S       IG+  + IG  L                  L     D   
Sbjct: 121 SVSYMVESALRISEGARAGVIGTAGSRIGDELIPMPRSVLSTPESPDLQYLLGYMRDRGV 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G   L  + +G +          + V T ++  HL +   +E    AK  +F+GL +   
Sbjct: 181 GTVVLEATSMGLLTHRIDRTFIDVGVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCEH-- 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     + A         + ++     ADF+       +  +   +  QG+   
Sbjct: 239 AVVNADDPVGARIGAMMPGA----VTTYALDAEADFRATDLTADASGTRFTLHHQGRKYP 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G     N L  +     L  D+   + AL       GR +R       G  ++I
Sbjct: 295 AAIPTPGRFSVSNALAAMAACHTLGHDLAGLVSALGRMPQIPGRFERLTTV---GGTSVI 351

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  +P S++  +  +   +      R AV+      G+   +   D+  +   ++  
Sbjct: 352 VD-YAHSPDSLEKVLGAVRGFA------RSAVVTVFGCGGDRDTTKRTDMGRIAGTHSDL 404

Query: 403 HVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V  S          + D +   I                  F  S+    D+V++  K 
Sbjct: 405 VVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERFTDRRTAIEFALSAAGPDDIVLIAGKG 464

Query: 452 S 452
           S
Sbjct: 465 S 465


>gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida
           GA99-3549]
          Length = 479

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 173/472 (36%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       ++ + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHQFEDQKC----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                       + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYYKKYQNLVMEVS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 176 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   + A     I +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 233 DEYGQRLCNMTQA----PIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++ A+  L+  +P+       + G         +     +AE  +   +     
Sbjct: 343 AHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDN 399

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++          +  + +    F   +   GD++++  K 
Sbjct: 400 NRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 539

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 161/470 (34%), Gaps = 40/470 (8%)

Query: 4   LWTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +    +LL         S+  +    ++GI+ DSR + P   F A+ G   DG  FI  A
Sbjct: 49  MMMLSNLLADTSAAPVTSLTGMAGVHISGITADSRQVMPGWVFAALPGQKTDGRRFIADA 108

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++         G    P+    +    L  +A         TI AITG+ GKT
Sbjct: 109 VERGAAAILAPAGTAWPPGVPPRPMIQDAEPRRLLALMAARLAGAQPHTIAAITGTNGKT 168

Query: 121 TTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLAR---MPVDVDFGIFE 166
           +T + L    + + ++ A +G+                  P+TLA+   M          
Sbjct: 169 STADFLRQIWTLLGRSAASLGTLGLIAEGFHPQDSLTTPDPVTLAQTLAMLARAGIQHTA 228

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L  S  G  +F    VR   A  T +   HL          +AK  +F  L   G   + 
Sbjct: 229 LEASSHGLDQFRLDGVRLSAAAFTNLTRDHLDYHGTEAAYRTAKLRLFADLLPAGAPAIA 288

Query: 227 ---YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D    E L+  +   G++ I     S ++   L   +  +   ++ ++ +G +  +
Sbjct: 289 SPTLDQITLEALRGIARRRGLRLII--AGSPDSPLPLLAIEPHAGGQYLTIREEGTTHRI 346

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G   A N++    I + L          + +     G   R   A        I 
Sbjct: 347 NVPLPGRFQADNIITAATIAASLGK-----RGIVPLLSRLTGVRGRMEQAATLPNGAAIY 401

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++  +  L    PH  G+   V G   +     +    +     +  +   
Sbjct: 402 VDYAHTPDALERLLDALR---PHTSGKLHVVFGAGGDRDPGKRPLMGE----AARTHADR 454

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGL------FLFIQSSLVDGDVV 447
           + ++  +  +   A  R+  +      + +            SL  GDV+
Sbjct: 455 LIVTDDNPRSENPAKIRAAILAACPDAEEIGDRAEAIAHAIRSLQPGDVL 504


>gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
 gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
          Length = 491

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/460 (20%), Positives = 168/460 (36%), Gaps = 55/460 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +++DSR+I   + F A+ G   DG  FI  A+ +GA  V+V+TD     G + +   GV 
Sbjct: 22  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIVAEQGVQ 81

Query: 90  DVLGALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                L K   A               I+ ITG+ GKT+T ++    ++ +    A +G+
Sbjct: 82  IYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGKAAVMGT 141

Query: 143 YNNHIGVPL-----------TLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHI 186
             N +   L           TL R   +     V+    E+    L + R     V   +
Sbjct: 142 LGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGR--VDAVPFDV 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           AV T +   HL     +E  A+AK  +  F+ L       LN DD       A+   +  
Sbjct: 200 AVFTNLTRDHLDYHGDMENYAAAKQMLFRFDSLRHG---LLNLDDPIGGAWLAELKNVPA 256

Query: 245 KTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           K I+ F     K A F  +  +   +     +      +++    +G     N+L  L  
Sbjct: 257 K-IWGFSIEAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDISSPLLGAFNLSNLLAALSA 315

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +   D+      +    P  GR +R+  A N    TL+ + Y   P +++ A++ L +
Sbjct: 316 LYLQGMDMRALAAKVPYLVPVAGRMERFTTADN---ITLVVD-YAHTPDAIEQALNALRR 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413
              H  G    V G   +  +  +      AE  +      + ++  +  +         
Sbjct: 372 ---HCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFA----DRIMVTSDNARSEDPNQIITD 424

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L                  + +    GDV+++  K 
Sbjct: 425 IIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKG 464


>gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 2336]
 gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336]
          Length = 495

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 171/492 (34%), Gaps = 65/492 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  LW   + L ++            +  + +DSR       F AIKG   DG +FI+ A
Sbjct: 4   LTALWDIDEQLDSVH-------RDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQA 56

Query: 61  VQKGAGLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAIT 114
           +Q GA  V+  TD+V          +IP+    ++   L+ +A         + T++ +T
Sbjct: 57  IQNGASAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPV 158
           G+ GKTT  ++L      +  T A +G+  N +   +  A                 +  
Sbjct: 117 GTNGKTTIAQLLAQWTQILGHTSAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQ 176

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+     G ++     +     + T ++  HL     +E  A AK  +F  L 
Sbjct: 177 GADFAAIEVSSH--GLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELN 234

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--------LRKWKQCSEQS 270
                 LN DD        +        +     S  AD+Q               S+ +
Sbjct: 235 CQHK-ILNVDDEIGATWLIELSKDDPDVV---AVSCRADYQPDTKNWLKATALSFHSKGT 290

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +E      +  +    IG     N+L+ L  +  L  D+D  +  +       G   R 
Sbjct: 291 TIEFASSWGNGILSSPLIGGFNVSNLLLVLATLLSLGYDIDKLLATVRQLTGVCG---RM 347

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +   T+I + Y   P +++ A+      + H +G+   + G   +     +    
Sbjct: 348 EMLSAKHKATVIVD-YAHTPDALENALQ---SAAVHCQGKLWCIFGCGGDRDRGKRPLMA 403

Query: 391 DLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +AE  +      V ++  +         +  +     +S  V      +        S 
Sbjct: 404 AIAEKFA----DSVIVTDDNPRTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSA 459

Query: 442 VDGDVVVV--KS 451
           V+ DVV++  K 
Sbjct: 460 VENDVVLIAGKG 471


>gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 476

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 164/454 (36%), Gaps = 49/454 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+   S ++ P + F A+ G   DG  FI  AV +GA  VVV+ + VA   +  +    
Sbjct: 17  TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGAR-VVVHKEGVAVAPAAGVSTLA 75

Query: 88  VDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +    L  LA AA         I+ +TG+ GKTTT  ++   LS+       IG+ + 
Sbjct: 76  VPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIGTVHC 135

Query: 146 HIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   A M                   V+  + E+    L +    T  +   + V 
Sbjct: 136 SWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQ--ERTAGLPMAVGVF 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           + +   HL     +E    AK+ +F +G  +     +N DD +   LK     L      
Sbjct: 194 SNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRLKMMRPDL-----L 248

Query: 249 SFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            FG  S++A+ + R     +E   + +   G + E+    +G H A N+L  +G   +L 
Sbjct: 249 GFGLDSEDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVGAGLLLG 308

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
               TA +   +       G+  R    +     ID  Y   P +++     L  +   G
Sbjct: 309 L---TAAQCACLSQALGAPGRLERVPNTRELNIFID--YAHTPDALEKVSVALKSM---G 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD----ALP 419
             R I V G     G+   S    +   ++ +    V  S         ++ D     L 
Sbjct: 361 FKRLITVFGC---GGDRDASKRPLMGAAVARHADVAVVTSDNPRTEDPESILDQIEPGLA 417

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  V               S+  GD +++  K 
Sbjct: 418 GARLVLREVDRRKAIALAVQSMQPGDALLIAGKG 451


>gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
 gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
          Length = 508

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 171/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L      +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
 gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
          Length = 487

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 151/475 (31%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                 L  ++  ++    +  V+ I+ DSR       F A++G   DGH +I  A  +G
Sbjct: 1   MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV                       A    A         T++ +TG+ GKTT   
Sbjct: 61  CRAFVVEDLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELG 168
           +L      +      + +  N++             PL L  +         ++   E+ 
Sbjct: 121 LLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                + R     +     + T +   HL     + E   AK   F+GL       +N D
Sbjct: 181 SHAAAQKRI--GALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     + ++     A+++ +  ++  +   M +       EV    +
Sbjct: 239 DKNGLVMVQNTRA----RVCTYALKSMANYRAKIVERHIDGMDMYMD----DREVFVRLV 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G    L  D +  ++ LS     +G   R++   ++  +  I + Y  
Sbjct: 291 GDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDG---RFQTFTSKDGYVAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   +  +  ++     + I V+G     G   +     +A+  +  +   +  S 
Sbjct: 347 TPDALINVLDTIRPLAKSH--KVITVVGA---GGNRDKGKRPIMAKEAARRSERLILTSD 401

Query: 409 --------FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +   L                           GD V++  K 
Sbjct: 402 NPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKG 456


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 146/398 (36%), Gaps = 30/398 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  +N +S DSR I     F AI G   DGH FI  A+ +GA  +VV++       S +I
Sbjct: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86

Query: 84  ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK----- 134
               P+  VD+    L+  A     +    I+A+TG+ GK++    +             
Sbjct: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146

Query: 135 -KTYACIGSYNN----HIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               + I S+          P+ LA+         V     E     L + R     ++ 
Sbjct: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKL 204

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
                T +   H+      +   +AK  +FE  L K     +  DD++ + +  ++H  G
Sbjct: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + S G        L+K      +  + + ++GK  + +    G     N L+  G+ 
Sbjct: 265 CR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  D    ++ L   H   GR +        G    I   Y     S++  +  +  I
Sbjct: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI 379

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +    GR I V G   +  +  +     +A  L+   I
Sbjct: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414


>gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 535

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 102/521 (19%), Positives = 199/521 (38%), Gaps = 70/521 (13%)

Query: 5   WTFHDLLQAIQGHSIG------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               DLL++++  SI        + +  +N I+  S+ +     F  IKG   DGH++  
Sbjct: 1   MNLTDLLKSVEIDSIRPNQIETELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYAK 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
           HAV +GA +++V       I  L +    V +    L  L+     +     ++  +T +
Sbjct: 61  HAVSQGATVIIVEQF----IEDLDVLQLKVSNSREVLAILSSNFFDQPSKSMSLFGVTAT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DV 160
            GKTT   M      + +     IG+    I   + ++R+                  ++
Sbjct: 117 NGKTTITYMTEEIFKAYQLKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKMRDQEI 176

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                E+  S L E++ + H     +   T I+P H+      E    AKA +     K 
Sbjct: 177 THVSMEVSSSAL-ELKRVYH-TDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRNASKM 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ-- 277
            T  LN D+     L  ++ A     + +FG ++K+    +   +  S     +V +Q  
Sbjct: 235 STAILNLDEQLLIPLAEETAA----QVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQEP 290

Query: 278 -----GKSMEVV-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                G+ +E           GYH   N L  L    +    ++   + +  F   E   
Sbjct: 291 FNTLSGERIEPTSFDLELSIPGYHSIYNALTALVTGLVNDIPLEYVQRGIKNFRGVE--- 347

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMC 379
           +R++   ++ F  + D   N N  ++ + +  ++ +  +      A+ G        ++ 
Sbjct: 348 RRFQILYDKEFKVIDDLLLNQN--NIDSCMETINHLDYNELHLVHALRGSNGPAHSTEIA 405

Query: 380 EMGELSQSFHI-DLAEVLSLYNISHV-----WLSGFHVLALKDALPRSIHVHYSETMDGL 433
           E   L++ FH   +++++     SHV              LK     +I V +S  +D  
Sbjct: 406 E--SLAKWFHELKISKIILTTASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDA 463

Query: 434 FLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLEEFPAIQ 472
             F    L + DV+++  ++S   G  + + LL E +P + 
Sbjct: 464 LRFGVERLNEEDVLLISGAHSMDQGARKTLELLKEIYPTVD 504


>gi|11272240|pir||A81777 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) NMA2061 [imported]
           - Neisseria meningitidis (strain Z2491 serogroup A)
 gi|121052817|emb|CAM09164.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis Z2491]
 gi|308388625|gb|ADO30945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           alpha710]
 gi|319411048|emb|CBY91448.1| UDP-N-acetylmuramate-L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 506

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 159/430 (36%), Gaps = 55/430 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV     +L  L +             IAI G+
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG---------IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +    L +     T+   G  N       T AR+    ++ + E   S    
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAEADESDASF 206

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +        P ++V+T I   H+  +   +E++  A  +    +   G  FL  D     
Sbjct: 207 LHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVR 261

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
            +  K      K   ++G    AD      +    Q    V +Q K     S EVV +  
Sbjct: 262 AILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMP 317

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYN 347
           G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L+ + Y 
Sbjct: 318 GRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYG 377

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHV 404
            +P  M A +S      P     +  VL         ++    D  +VL+  +    + V
Sbjct: 378 HHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEV 433

Query: 405 WLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S  
Sbjct: 434 YAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSIN 493

Query: 457 FYRLINLLLE 466
             R+   LLE
Sbjct: 494 --RVPAALLE 501


>gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 508

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 172/483 (35%), Gaps = 63/483 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++GI+  S+ + P   FFA+ G H+DGHDFI  A+Q G+ +
Sbjct: 14  QDLIKYVKGSL-----DLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDDV----LGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           +V + D+     +  +    +DD       +            K  +I +TG+ GK++  
Sbjct: 69  IVCSRDLDFYNPN--VTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARMPVD-VDFGI 164
             + + L         I +                        + L L+ M  + V + I
Sbjct: 127 YYIYLLLRKKGVKVGFISTVFFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L   V    AV T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLID-VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       IK  +++  K+  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDFYSYDFKN-----AIKKSFTYSLKNSQADFFVSFINEKTDSTEFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
               + +G    +N++  L  +  IL +D+   +  LS     +GR         Q F  
Sbjct: 301 FANVNLLGSFNVENVMAALILVSKILNSDIQDIVDNLSCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +++  S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKKFTTN---RLISVFGSAGERDFAKRFLQGQISDSYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + L          +  +KD          +  + +            S    GD++V
Sbjct: 411 -DLIVLCDEDPRGENSMCIIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLIV 469

Query: 449 VKS 451
              
Sbjct: 470 TLG 472


>gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS223]
 gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS223]
          Length = 499

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 185/488 (37%), Gaps = 57/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLA---VAARLRSKATI 110
           GA  V+V+TD     G           + I VF +   + A+             +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHRDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD 159
           I ITG+ GKT+T +++   ++S+ +  A +G+  N +   L           TL R   D
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 160 VDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +     +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEV 274
               G   LN DD+  E    +  ++  + ++ F     + A F  +  K   +     +
Sbjct: 237 -STLGHGLLNLDDTVGESWLTELKSVPAQ-MWGFSIEGHQAAAFYTKDAKFDDQGVSATL 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  E+    +G     N+L  L  + +   D+    + +    P  GR +R+  A 
Sbjct: 295 VWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAK 354

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + +
Sbjct: 355 N---ITLVVD-YAHTPDAIEQALNALRR---HCVGDLWCVFGC---GGDRDKGKRPLMGQ 404

Query: 395 VLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGD 445
               Y    + ++  +  +      + D +    H   + T       I+  +     GD
Sbjct: 405 AAEQY-ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILLAGKG 471


>gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 532

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 143/356 (40%), Gaps = 21/356 (5%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTL-ARMPVDVD 161
            +    +I ITGS GKT+TK+ L   L  ++  T+      N  +G+  ++  R+     
Sbjct: 174 KKIDPYVIGITGSYGKTSTKDALGQLLQITLGSTFWPSKGINTDMGITRSIRERLEPLTK 233

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+     G IR L  L  PH  +IT I  AHL  F   + I  AK+E+ + + + G
Sbjct: 234 YAVIEMAAYGTGSIRRLCGLTPPHAGIITGIGLAHLDRFGDQKTIYQAKSELAQAIPEEG 293

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQG 278
            +  N D+     + A+      +T   +G     ++ D  +   +   E +   ++ +G
Sbjct: 294 ILICNGDNPGTRQISAEFKK---QTTLLYGLDNSKRDLDCWITPLELTKEGTRFRIEWEG 350

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           KS E +    G     N      +   L A  D A  ALS   P   R +  R       
Sbjct: 351 KSFEGITSLYGNTSLSNCAGAFAMACALGAQPDFAAAALSTLIPVNNRLQISRDEER--- 407

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T I ++YN+NP    +A+ VL Q+      +RI +   M E+ E + + H  +    + 
Sbjct: 408 -TYIHDAYNSNPEGFLSALHVLHQMPA---RKRILMTPGMIELAEQNLNMHHKVGYQAAK 463

Query: 399 YNISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  L G        L L         +  +E     F  + + +  GD V++
Sbjct: 464 V-CDLAILVGKTNRESLSLGLIAGGFTQSQIITAEHRSEAFEKLAAVMEKGDAVLI 518


>gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS185]
 gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS185]
          Length = 499

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 180/488 (36%), Gaps = 57/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLA---VAARLRSKATI 110
           GA  V+V+TD     G           + I VF +   + A+             +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHSDNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD 159
           I ITG+ GKT+T +++   ++S+ +  A +G+  N +   L           TL R   D
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHD 176

Query: 160 VDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +     +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEV 274
               G   LN DD+       +  ++  + ++ F     + A F  +  K   +     +
Sbjct: 237 -STLGHGLLNLDDAVGASWLTELKSVPAQ-MWGFSIEGHQAAAFYTKNAKFDDQGVSATL 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  ++    +G     N+L  L  + +   D+    + +    P  GR +R+  A 
Sbjct: 295 VWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAN 354

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + +
Sbjct: 355 N---ITLVVD-YAHTPDAIEQALNALRR---HCAGDLWCVFGC---GGDRDKGKRPLMGK 404

Query: 395 VLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
               Y    + ++  +  +         +   L  S               + +    GD
Sbjct: 405 AAEQY-ADRIMVTSDNARSEDPAQIITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILLAGKG 471


>gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
 gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
          Length = 508

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 171/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       IK  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L      +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 490

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 163/452 (36%), Gaps = 31/452 (6%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + G++ DSR +     F A+KG   DG  F+  AV++GA  ++   D   +I 
Sbjct: 17  GDAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD   AL   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     V+
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAAMEASSHGLDQRRL--DGVK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 T +   H+   + IEE   AK  +F  L   G   + + D  F     ++  L 
Sbjct: 193 LAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLA 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+ 
Sbjct: 253 GCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLA 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +       A++AL++     GR        +     +    Y   P +++   +VL+ +
Sbjct: 312 MVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTSV 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRS 421
            P   GR I V G   +  +  +    ++A  L+   I       S        + +  +
Sbjct: 366 RPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDNPRSEVPAQIRSEIMAAA 425

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            S +  GD +VV  K 
Sbjct: 426 PGATEIGDRREAIFTAVSMMQAGDTLVVAGKG 457


>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sp. M21]
 gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
          Length = 505

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 155/427 (36%), Gaps = 44/427 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  ++   +       +  +  DSR +AP   FFA++G   DG +F+  AV+ G
Sbjct: 1   MKLAQLLNCLEAPEVAGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V +           + V  V D   A++ +A A          ++ ITG+ GKTTT
Sbjct: 61  AVAIVADRPCACP----GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLT------LARMPVD-----VDFGIFE 166
             ++   +       A +G+ +       I  P T      L R+  +         + E
Sbjct: 117 TYLVEGIMEQAGVPSAVLGTISYRFAATEIPAPNTTPESVDLQRILRELVDLGARGAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L +           +A+ T +   HL     +E    +K  +F  L      +  
Sbjct: 177 VSSHSLEQ--RRVDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPL 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD F   +  K+ A     + ++  +  AD  + + +   +     +      
Sbjct: 235 RRAVVNLDDPFGPRIAEKASA----PVLTYSMTGKADISVAEAEFTVDGIRCRLDTPVGE 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +V   +G     N+L  +G    L    +     +       GR +R      +G   
Sbjct: 291 ISLVSELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVESE--EGITV 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D  Y     +++  +S +S++      R I + G     G+  +     + E+ + Y+
Sbjct: 349 LVD--YAHTGDALENVLSTVSELKTD---RIITIFGC---GGDRDKGKRPVMGEIAARYS 400

Query: 401 ISHVWLS 407
              V  S
Sbjct: 401 DLAVITS 407


>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
 gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
          Length = 486

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 160/463 (34%), Gaps = 42/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +     G   +  + GI+ DSR + P + F A+ G   +G  +I  A+ +GA  V+V   
Sbjct: 14  LSAQLQGNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYIADALSRGAAAVIVAEG 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             A  G+   PVF + +    L + A     R   T++A+TG+ GKT+         +  
Sbjct: 74  SGADAGA---PVFELSEPRRFLAQAAARLFGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
               A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 131 GLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQSRL 190

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               VR   A  T +   H+     +E   ++K  +F  L   G+   +  DD +     
Sbjct: 191 --DGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAI 248

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +   G   + + G++ +    L++ +    +   EV +     E+     G     N 
Sbjct: 249 AAARKAG-HDVRTVGRNGDF-ISLKRVEHFRHKQSAEVHVGDDIFEIHVPLAGDFQVANA 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+          A  A S     +G   R           L    Y   P +++  
Sbjct: 307 LVAAGLAMSTGI---EAKVAFSALEKLQGASGRLELVGQTKDGALAYVDYAHKPDALE-- 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
            +VL  + P   GR I V G     G+  +     + ++ +      V ++  +  +   
Sbjct: 362 -NVLESVRPFTTGRVIIVFGC---GGDRDKGKRPIMGQIAARL-ADVVIVTDDNPRSEIP 416

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                + +  +                   L  GD ++V  K 
Sbjct: 417 ETIRSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKG 459


>gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
          Length = 508

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 171/479 (35%), Gaps = 63/479 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           VV + D+     +  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDVDFYSPN--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGI 164
             + +           I +                        +   L+ M   +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GT 222
            E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G 
Sbjct: 187 LESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD +    K       IK  +++  KS  ADF +    + ++ +  E   +G   
Sbjct: 246 GVINLDDLYSSDFKN-----AIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKY 300

Query: 282 EVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                 +G    +N++  L  +  IL  D+   +  L      +GR         Q F  
Sbjct: 301 LANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINL--GQNFSV 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S   
Sbjct: 359 IID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGERDVEKRFLQGQIADIYS--- 410

Query: 401 ISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 -DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium medicae WSM419]
 gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
           WSM419]
          Length = 486

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 157/463 (33%), Gaps = 42/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +     G      + GI+ DSR + P + F A+ G   DG  +I  A+ +GA  VV  T 
Sbjct: 14  LSAQLKGDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYITDALSRGASAVVAGTS 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             A  G   I VF + +    L K + +   R   T++A+TG+ GKT+         +  
Sbjct: 74  ARAEAG---INVFTISEPRRFLAKASSSFFGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
             + A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 131 GFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQQRL 190

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               V    A  T +   H+     +E   ++K  +F  L   G+   +  DD +     
Sbjct: 191 --DGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLPKGSPAVIFADDQWSADAI 248

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +   G   + + G++ +    L++ +    +   EV +     E+     G     N 
Sbjct: 249 AAARKAG-HDVRTVGRNGDF-IALKRVEHFRHKQSAEVHVGDDIYEIHVPLAGDFQVANA 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+          A  AL       G   R           L    Y   P ++   
Sbjct: 307 LVAAGLAMSTGISAKAAFSALERLQGASG---RLELVGQTKDGALAYVDYAHKPDALS-- 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
            +VL  + P   GR + V G     G+  +     + E+ S      V ++  +  +   
Sbjct: 362 -NVLESLRPFTTGRVVVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVP 416

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                + +  +                   L  GD ++V  K 
Sbjct: 417 EVIRAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKG 459


>gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 479

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 51/471 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ +Q   +         G+  DSR I     F A++G   DGH FI  A++KGA L
Sbjct: 2   EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V+ ++    G   + +  +   LG L         +    I+ +TG+ GKTTT  +L 
Sbjct: 62  IIVSKEVPCQKGIGYVLIKNLRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLE 120

Query: 128 IALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSH 171
             L    +  A  G+    I              L L RM        +++ I E+    
Sbjct: 121 QLLGE--EKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R   +++    A+ T +   HL     +E+   AK ++F  L       LN DD +
Sbjct: 179 LELGR--VNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEY 236

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            + L+ + H        S+G +K A  Q +       +  +E+ L GK  E     +G  
Sbjct: 237 GKRLQEEFHG------ISYG-TKQAGVQGKILGFEGGKERVELSLFGKKKECKIQILGGF 289

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L ++ +V  L    +     + +     GR +   C   Q +  +ID  Y     
Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDC--GQDYMVVID--YAHTGD 345

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++  +  + +I      + I + G   +     +    ++AE  S      V L+  + 
Sbjct: 346 ALENILQAIQEIKTK---KIITIFGCGGDRDPRKRPIMAEIAERYS----DFVVLTSDNP 398

Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +K    +  H+   E  + +   I+ +   GD+V++  K 
Sbjct: 399 RTENPESILEEVKGGFTKENHICVLERAEAIAEGIRRA-EKGDIVLIAGKG 448


>gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
 gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
          Length = 514

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 152/464 (32%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVRI 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L     A        +I +TG+ GKT+  + +  ALS   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       +  E+    L + R      R  I
Sbjct: 153 LGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGR--ADGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     + E   AKA +F G        +N DD+    L     A     
Sbjct: 211 ALFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGVRLLTGLRA--DIE 267

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +G    A          +    +     +  +V        V    +G     N L 
Sbjct: 268 AVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG++ +       AI  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    G+  AV G   +     +     +AE L+     HV L+  +  +     
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQ----HVVLTSDNPRSEDPQQ 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DVVVV  K 
Sbjct: 440 ILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKG 483


>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 489

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 51/471 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ +Q   +         G+  DSR I     F A++G   DGH FI  A++KGA L
Sbjct: 12  EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 71

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V+ ++    G   + +  +   LG L         +    I+ +TG+ GKTTT  +L 
Sbjct: 72  IIVSKEVPCQKGIGYVLIKNLRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLE 130

Query: 128 IALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELGMSH 171
             L    +  A  G+    I              L L RM        +++ I E+    
Sbjct: 131 QLLGE--EKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHA 188

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R   +++    A+ T +   HL     +E+   AK ++F  L       LN DD +
Sbjct: 189 LELGR--VNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEY 246

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            + L+ + H        S+G +K A  Q +       +  +E+ L GK  E     +G  
Sbjct: 247 GKRLQEEFHG------ISYG-TKQAGVQGKILGFEGGKERVELSLFGKKKECKIQILGGF 299

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L ++ +V  L    +     + +     GR +   C   Q +  +ID  Y     
Sbjct: 300 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDC--GQDYMVVID--YAHTGD 355

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++  +  + +I      + I + G   +     +    ++AE  S      V L+  + 
Sbjct: 356 ALENILQAIQEIKTK---KIITIFGCGGDRDPRKRPIMAEIAERYS----DFVVLTSDNP 408

Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +K    +  H+   E  + +   I+ +   GD+V++  K 
Sbjct: 409 RTENPESILEEVKGGFTKENHICVLERAEAIAEGIRRA-EKGDIVLIAGKG 458


>gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
 gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
          Length = 482

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 162/488 (33%), Gaps = 76/488 (15%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57
           + T  +L            P+  V G+++DSR + P   F A+ G         DGHDF+
Sbjct: 1   MPTLKELFALFG----KEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFV 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITG 115
             A+ +GA  VV    +      L +P   V D   AL             K  ++ +TG
Sbjct: 57  PEALARGAVAVVGERPLA-----LPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 116 SVGKTTTKEMLTIALS--------------SIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S GK+TT  +L   L                + +       +      P   A +    D
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171

Query: 162 FG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEG 216
            G    + E+    L   R     +   + V     P  HL      E    AKA + E 
Sbjct: 172 RGLKSAVLEVSSHALALKR--VEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVER 229

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              +    L      F  L  + H        SFG  +  +      ++  E     +  
Sbjct: 230 ---SDLAVLARSLPHFPRLAQRPH-------LSFG--EGGEVYAEGLRETPEGLAFRLHT 277

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E     +G +  +N L        L   ++  ++ L+ F    G   R    L  
Sbjct: 278 PWGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPG---RMEVVLKA 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            F  +ID  +     S++AA+  L    P   GR + V+G     GE      +D+  V 
Sbjct: 335 PFRVVID--FAHTGKSLEAALKTLR---PTTPGRLLLVVGA---AGERDPQRRVDIGRVA 386

Query: 397 SLYNISHVWLS----GFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSL--VDGD 445
           +       +      G  + A+ +A+ ++              +     +++ L    GD
Sbjct: 387 ARLADKTFFTEEDHRGEDLFAILEAMAQAARAEGGVYELVPDREEAI--LKAILEARPGD 444

Query: 446 VVVV--KS 451
            V++  K 
Sbjct: 445 TVLLAGKG 452


>gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 492

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 159/481 (33%), Gaps = 55/481 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L+ I+       P   V  + +DSR + P + F AIKG   DG  FI  A++ 
Sbjct: 1   MRDLKDILKYIE----IDAPSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIEN 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  ++   D +    S   P++ V ++   L +LA            +I +TG+ GK+T
Sbjct: 57  GAIAIIA--DRLCEFESSFEPLYLVSELDKKLPELASRFYSQPSQTLDLIGVTGTNGKST 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFE 166
           T  M+           A IG+        L                L+ +       +  
Sbjct: 115 TTAMIAHLAQFCSTESAIIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVA- 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G ++      +   AV T ++  HL     +     AK  +F   E    + LN
Sbjct: 174 MEVSSHGLVQQRVAKCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFEPQ-VVVLN 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSM 281
            DD   E    K        +  +G+   A            +  SE    ++      +
Sbjct: 233 QDDFQAEQWLEK---YDFNNLICYGRKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDI 289

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G     N+   L  +  L   ++  +   +   P  GR +    A +Q     
Sbjct: 290 SIKSPLFGEFNLYNLTAALATLLGLGYPLEQLVAGCAQLQPVAGRMQ----AFSQAGMPT 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P ++  A+     +  H  G    V G   +  +  ++         +  N 
Sbjct: 346 CVVDYAHTPDALALAL---QALQLHVPGGVSCVFGCGGDRDKGKRALMAQ----AAEQNA 398

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           + + ++  +  +         +   L    + H          F   +    DV+++  K
Sbjct: 399 NKIIITSDNPRSENPDDIIADVAGGLTHPQNAHLEADRATAIRFAIENATADDVILIAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 487

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 151/475 (31%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                 L  ++  ++    +  V+ I+ DSR       F A++G   DGH +I  A  +G
Sbjct: 1   MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV                       A    A         T++ +TG+ GKTT   
Sbjct: 61  CRAFVVEDLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELG 168
           +L      +      + +  N++             PL L  +         ++   E+ 
Sbjct: 121 LLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                + R     +     + T +   HL     + E   AK   F+GL       +N D
Sbjct: 181 SHAAAQKRI--GALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     + ++     A+++ +  ++  +   M +       EV    +
Sbjct: 239 DKNGLVMVQNTRA----RVCTYALKSMANYRAKIVERHIDGMDMYMD----DREVFVRLV 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G    L  D +  ++ LS     +G   R++   ++  +  I + Y  
Sbjct: 291 GDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDG---RFQTFTSKDGYVAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   +  +  ++     + I V+G     G   +     +A+  +  +   +  S 
Sbjct: 347 TPDALVNVLDTIRPLAKSH--KVITVVGA---GGNRDKGKRPIMAKEAARRSERLILTSD 401

Query: 409 --------FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +   L                           GD V++  K 
Sbjct: 402 NPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKG 456


>gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella cf. novicida Fx1]
          Length = 487

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 175/475 (36%), Gaps = 51/475 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSQEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                  +    + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKNYRNLVMEVS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 176 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   + A     + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 233 DEYGQRLCNMTQA----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ A+  L+  +P+       + G     G    S    +A++   Y    V  
Sbjct: 343 AHTPDALEKALQTLNSYNPNN---LWCIFGC---GGNRDISKRPIMAQIAEEYASKIVIT 396

Query: 407 SGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +           ++          +  + +    F   +   GD++++  K 
Sbjct: 397 EDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. novicida U112]
 gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella novicida U112]
 gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 479

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 177/475 (37%), Gaps = 51/475 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       ++ + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHQFEDQKC----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                       + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYYKKYQNLVMEVS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 176 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIVNID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   +       + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 233 DEYGQRLCNMTQV----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ A+  L+  +P+       + G     G    S    +A++   Y    V  
Sbjct: 343 AHTPDALEKALQTLNSYNPNN---LWCIFGC---GGNRDTSKRPIMAQIAEEYASKIVIT 396

Query: 407 SG----FHVLALKDALPRSI---HVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +  + D + +       H +  + +    F   +   GD++++  K 
Sbjct: 397 EDNNRFESIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
 gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
          Length = 486

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 155/479 (32%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              HDL   +        P   V G++  +  + P  AF A++G   DGH F+  A   G
Sbjct: 1   MKLHDLAAELNLTPPAENPD--VTGVTHHAGWVRPGFAFVAVRGARVDGHAFMAEAAANG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V V  + +       +P   V       A    A+A        ++ ITG+ GKTTT
Sbjct: 59  A--VCVFGEGLPDGVPSPLPYVRVPGARAALADAAAALAGHPSRALRVVGITGTDGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMPVDVDFGI 164
             +    L +       + +    +                   V  TL+ +       +
Sbjct: 117 SWITRHLLRAAGVRTGLLSTVGYELPDGALRHFPAHFTTPEAPEVQSTLSEIGASGGEAV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                SH   +      V   +AV T +   HL     +E+  + KA + E    +    
Sbjct: 177 VLEASSHALALDR-VRAVDWDVAVWTHLTSEHLDFHGTVEQYFADKARLVERARFS---V 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD +   L+ ++ A       ++G    AD++    ++ S      V       +  
Sbjct: 233 LNADDPWTAQLRPRAAAY-----VTYGVEDVADWRAGDIEERSTGLHFHVLSPLGEFDAH 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +   + L + VD  +  L+ F    G   R            +  
Sbjct: 288 LPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRGVPG---RMELVPGGDAGVRVVV 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +   P S++ A+  L   +    GR I +LG     G         L EV +    + +
Sbjct: 345 DFAHTPPSLEKALEALRSTT---RGRLIVLLGSAG--GPRDPGKRAPLGEVATRLADTAI 399

Query: 405 WLSGFH--------VLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +    H        +  +      +   ++              +    GD V++  K 
Sbjct: 400 FTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVALARPGDTVLLAGKG 458


>gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
 gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
          Length = 490

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 157/458 (34%), Gaps = 43/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V GIS +S +    + F  + G   DG +F   A++ GA   +++            
Sbjct: 17  ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQAAEKFPPNDD 76

Query: 84  P-VFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  VDD   + A    A       +  +I +TG+ GKTTT  ++   L   +K  A I
Sbjct: 77  QCVIIVDDLITVAAEIAAAFYGHPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQKPTALI 136

Query: 141 GSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+           A                 +  + ++ + E+    L + R        
Sbjct: 137 GTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGR--VKQCPF 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++V T +   HL     +E+  SAK  +F          +N DD + + L     +   
Sbjct: 195 KVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPDYLQEKAIINLDDPYGKRLIE---SFKP 251

Query: 245 KTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++S+  S   ADF               +     S+E     +G     N+L  +  V
Sbjct: 252 EQVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAVSAV 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+   I++L  F    GR +R +    Q    ++D  Y   P S++   + L   
Sbjct: 312 LHFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVD--YAHTPDSLE---NSLKAA 366

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD--- 416
            P  +G+ I V G     G+  ++    + +  +      V  S          + +   
Sbjct: 367 RPFVKGKLICVFGC---GGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDIL 423

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +S+                     GD V++  K 
Sbjct: 424 TGISQSVEPLVISDRAEAIKTAILQAKPGDGVLIAGKG 461


>gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
 gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
          Length = 482

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 162/488 (33%), Gaps = 76/488 (15%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57
           + T  +L            P+  V G+++DSR + P   F A+ G         DGHDF+
Sbjct: 1   MPTLKELFALFG----KEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFV 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITG 115
             A+ +GA  VV    +      L +P   V D   AL             K  ++ +TG
Sbjct: 57  PEALARGAVAVVGEKPLA-----LPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 116 SVGKTTTKEMLTIALS--------------SIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S GK+TT  +L   L                + +       +      P   A +    D
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171

Query: 162 FG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEG 216
            G    + E+    L   R     +   + V     P  HL      E    AKA + E 
Sbjct: 172 RGLKSAVLEVSSHALALKR--VEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVER 229

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              +    L      F  L  K H        SFG  +  +      ++  E     +  
Sbjct: 230 ---SDLAVLARSLPHFPRLAQKPH-------LSFG--EGGEVYAEGLRETPEGLAFRLHT 277

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E     +G +  +N L        L   ++  ++ L+ F    G   R    L  
Sbjct: 278 PWGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPG---RMEVVLKA 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            F  +ID  +     S++AA+  L    P   GR + V+G     GE      +D+  V 
Sbjct: 335 PFRVVID--FAHTGKSLEAALKTLR---PTTPGRLLLVVGA---AGERDPQRRVDIGRVA 386

Query: 397 SLYNISHVWLS----GFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSL--VDGD 445
           +       +      G  + A+ +A+ ++              +     +++ L    GD
Sbjct: 387 ARLADKTFFTEEDHRGEDLFAILEAMAQAARAEGGVYELVPDREEAI--LKAILEARPGD 444

Query: 446 VVVV--KS 451
            V++  K 
Sbjct: 445 TVLLAGKG 452


>gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
 gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
          Length = 501

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 98/473 (20%), Positives = 162/473 (34%), Gaps = 69/473 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ ++ DSR+  P  AF AI G   DG  F+  A+  GA LVV   D+  +      P  
Sbjct: 23  IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASLVVAERDVEGA------PTV 76

Query: 87  GVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----- 139
            V D     A    A A       T+  ITG+ GKTT+  +L   LS+            
Sbjct: 77  VVPDARVALAALATATAGHPSHDVTVYGITGTNGKTTSSYVLHGILSAAYGEEKTGLLTT 136

Query: 140 ------------IGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                       + +      V   LARM    V+  + E     +   R      R   
Sbjct: 137 AEIVVGREREPAVRTTGEAPQVQGNLARMRDAGVEHVVLETSSHGIHLHR--VAGTRYAA 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     +E+    K  +FE     G    N DD++   + A+        
Sbjct: 195 ALFTNLTRDHLDLHGTMEDYFLTKRRLFEW--TDGPKLTNVDDAYGARIVAEVPG----- 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNML 297
              FG S+NAD+++ K       +   +    +          +E+    +G +   N+ 
Sbjct: 248 TLGFGVSENADYRITKVHPSDGGTAFTLTTPERFLDGRDAPGVIELQMPLLGDYNVHNVA 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               I   +   +DT + A++      GR +R   A  +GF  ++D  Y      ++  +
Sbjct: 308 GASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPAATAKGFEVVVD--YAHTEVGLELVL 365

Query: 358 SVLSQISPHGE---------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--- 405
            V   +              GR I V G     G    +    + E  S     ++    
Sbjct: 366 DVARAVVGRDHADGGVRSEGGRVICVYGA---AGRRDPAKRPKMGEAASRLADVNIITND 422

Query: 406 -LSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   A+ D +             +  D +   +  +   GD+VVV  K 
Sbjct: 423 DTYDEDPQAIADEVMAGADPSNTTIVLDRRDAIRQALTQA-RPGDIVVVAGKG 474


>gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 511

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 177/488 (36%), Gaps = 56/488 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  + + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALNK---LAVAARLRSKATIIAITGSVGKTTT 122
             ++ +     IGS+    +  ++D L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFE 166
             +L   L  + K  A  G+  N       +                A +  + +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223
           +    + + R          A+ T +   HL   S +E     K ++F      EK G  
Sbjct: 186 VSSHSIAQNRI--SGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGIC 243

Query: 224 FLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L +  +  +L + T  +  + ++ D F +   K     S        + 
Sbjct: 244 VLNHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPREK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    +G     N +  + I+  L   +    K +  F    GR ++ +   N    +
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSRS 363

Query: 341 L--IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           L  +   Y   P  +K  +  + ++    EG+ I V G   +     +     +AE  S 
Sbjct: 364 LPTVIVDYAHTPDGLKKVLQSIKKL---CEGKLITVFGCGGDRDRSKRPLMGSIAEEFS- 419

Query: 399 YNISHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                ++++  +  +             +K     +I +   + ++    F +      D
Sbjct: 420 ---DQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKK----D 472

Query: 446 VVVV--KS 451
           +V++  K 
Sbjct: 473 IVLIAGKG 480


>gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 496

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 150/455 (32%), Gaps = 37/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  +  +S DSR     + F A  G   DG +++  A+  GA   +V      + G    
Sbjct: 15  ERVIGTLSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGAQAYGFNDD 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V     +  A   +A A       +  + AITG+ GKT+T   L  AL  + +    +G
Sbjct: 75  RVATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRLGRKCGIVG 134

Query: 142 SYNNHIGVPLTL--------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +        +                 R   D  F    L  S +G         R  IA
Sbjct: 135 TLGIGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACALEASSIGLEEGRLDGTRIQIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T     HL   + + +   AK  +F          +N DDS    L A      +  +
Sbjct: 195 VFTNFTQDHLDYHASMPDYWRAKQMLF-NWPGLRAAIINVDDSRGLELSAALAGTSL-DV 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           ++   +  A  Q +   Q +     +V   G+   +    +G +   N+L  +  +  + 
Sbjct: 253 WTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVSNLLGVMASLRAMD 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A+ A +   P  GR +            L+   Y   P +++  ++ L+ ++   
Sbjct: 313 VPLADAVAACADLLPVPGRTETLAVP----GLPLVVIDYAHTPDALEKVLTALNPVAQGR 368

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            GR   V G     G    +    L    +  N   + ++  +  +         +   L
Sbjct: 369 GGRLWCVFGC----GGDRDAGKRPLMAAAAEKNADQLVITSDNPRSEDPVTIIGQMLKGL 424

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R    H  E                DVV++  K 
Sbjct: 425 SRPQVAHVQEDRRAAIAHALQLAQPQDVVLLAGKG 459


>gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 484

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 171/472 (36%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   + K
Sbjct: 6   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 65  GVSLVLTDSHEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                  +    + E+ 
Sbjct: 121 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 181 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 237

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   +       + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 238 DEYGQRLCNMTQV----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 294 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++ A+  L+  +P+       + G         +     +AE  +   +     
Sbjct: 348 AHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDN 404

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++          +  + +    F   +   GD++++  K 
Sbjct: 405 NRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKG 456


>gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 492

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 171/472 (36%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   + K
Sbjct: 6   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 65  GVSLVLTDSHEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                  +    + E+ 
Sbjct: 121 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEVS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 181 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 237

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   +       + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 238 DEYGQRLCNMTQV----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 294 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++ A+  L+  +P+       + G         +     +AE  +   +     
Sbjct: 348 AHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDN 404

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++          +  + +    F   +   GD++++  K 
Sbjct: 405 NRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKG 456


>gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 487

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 171/472 (36%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                  +    + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEVS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 176 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   +       + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 233 DEYGQRLCNMTQV----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++ A+  L+  +P+       + G         +     +AE  +   +     
Sbjct: 343 AHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDN 399

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++          +  + +    F   +   GD++++  K 
Sbjct: 400 NRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKG 451


>gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 479

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 171/472 (36%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
              +   L    +    +G+  N I   L  +                  +    + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEVS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R     +   +A+ + ++  HL     ++    AKA++F+  ++     +N D
Sbjct: 176 SHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KRLKKAIINID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D + + L   +       + +   KS+ AD  ++       ++  E+   G+ + E    
Sbjct: 233 DEYGQRLCNMTQV----PVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+ ++   +  +  D D  +  L    P +GR +      +     +ID  Y
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL--DNDIKIVID--Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----- 401
              P +++ A+  L+  +P+       + G         +     +AE  +   +     
Sbjct: 343 AHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDN 399

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++          +  + +    F   +   GD++++  K 
Sbjct: 400 NRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKG 451


>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 485

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 164/452 (36%), Gaps = 50/452 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +        + +  
Sbjct: 22  DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHKVSYVLIDE 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNH 146
           +   LG +         + K  II +TG+ GKT++  M+   +     T    IG+    
Sbjct: 82  IRHKLGYIASNFYEW-PQRKLKIIGVTGTNGKTSSTYMIEKLM---GDTPITRIGTIEYK 137

Query: 147 IGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           IG  +  A                 +   +++ + E+  SH  EI     ++    A+ T
Sbjct: 138 IGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGR-VDVLDFDYALFT 195

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E    AK ++F  L+       N DD + + L  +        I S+
Sbjct: 196 NLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKYGKRLYDE-FIEDNPEIISY 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G     D +        +  +++++ + K  +V    +G     N L  + I   +    
Sbjct: 255 GID-GGDLEGEYL----DDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAIARKMGISW 309

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  ++ +S      GR +   C   Q +  ++D  Y   P ++   I     I      R
Sbjct: 310 EDILERVSNIKAAPGRFEALNC--GQDYKVIVD--YAHTPDALVNVIVAARNIR--NGNR 363

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421
            I + G   +     +      AE LS      V L+  +            +K    ++
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLS----DIVILTSDNPRTESPEQIFADVKAGFTKT 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +    +       +     D++++  K 
Sbjct: 420 DDYLFEPDREKAIKLAINMAEKNDIILITGKG 451


>gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 488

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 166/467 (35%), Gaps = 48/467 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I     +  +++DSR+      F AIKG   DG  +I  A++ GA  V+   D     
Sbjct: 10  IDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQH 69

Query: 79  GSLS----IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +     IP+     +   L++LA           T++ +TG+ GKTTT ++L      
Sbjct: 70  LQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQL 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIR 176
           +  T A +G+  N +   +  A                      DF   E+     G ++
Sbjct: 130 LGHTGAVMGTIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSH--GLVQ 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LL 235
                V    AV T ++  HL     +E  A+AK  +F  L+ +    ++ DD      L
Sbjct: 188 HRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELD-SRYQIIDADDPVGAVWL 246

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               HA+ +     F   +    +    +   + + ++ +    + E+    IG     N
Sbjct: 247 AEMPHAVAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSN 306

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+    +  L   +   I ++       GR +       Q    ++D  Y   P +++ 
Sbjct: 307 LLLVTATLLTLDYPLSGLINSVHKLTGVCGRMEMLHTP--QKPTVIVD--YAHTPDALEK 362

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
           A+        H  G+   + G   +     +     +AE L+     HV  +  +     
Sbjct: 363 ALQA---ARLHCRGKLWCIFGCGGDRDSGKRPLMAKIAEQLA----DHVIATDDNPRTEE 415

Query: 414 ----LKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D L   +H   V               S V+ DV+++  K 
Sbjct: 416 PKKIMADILNGFVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKG 462


>gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
 gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
          Length = 494

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 158/465 (33%), Gaps = 52/465 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    V  + +DSR+    + F A+ G   DG  FI  AV  G   V+   D     G 
Sbjct: 21  ELESIAVEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGL 80

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +    ++PV  ++++   L++LA          +I +TG+ GKTT  +++   L  + + 
Sbjct: 81  IEWLDTVPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140

Query: 137 YACIGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTH 180
            A +G+  N                I +  TL+ +  +   +   E+    L + R    
Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGR--VK 198

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---A 237
            +   + V T ++  HL     +EE A AK  +F    K     +N DD   +      +
Sbjct: 199 ALDFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEVGKAWMSDLS 257

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A+ +  +  + +S                  +         ++    IG   A N+L
Sbjct: 258 NAIAVSLSPLTGYQQS----VWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVL 313

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    +  L  D    +       P  GR + ++              Y   P +++ A+
Sbjct: 314 VAFATLLSLGIDKQILVDTAPQLQPVIGRMELFQVPNKAKVVV----DYAHTPDALEKAL 369

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L     H  G+  A+ G   +     +      AE  +      + +S  +  +    
Sbjct: 370 AALR---VHCSGKLWAIFGCGGDRDTGKRPMMSATAEQFA----DKIIISDDNPRSEEPA 422

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +   L +               F        D++++  K 
Sbjct: 423 LIVKDMLAGLSKPEAAFVEHDRYQAVKFALEQAGSDDIILLAGKG 467


>gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
 gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
          Length = 489

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 169/458 (36%), Gaps = 44/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G+++DSR + P   F A+ G    G +FI +A+++GAG ++ +        +  +
Sbjct: 15  DPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAAELV 74

Query: 84  ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                +   +D   AL   A         T++A+TG+ GKT+          ++      
Sbjct: 75  GADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHKAIS 134

Query: 140 IGSYN----------NHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHI 186
           +G+            +    P+TL R+  +          +  S  G  +     VR   
Sbjct: 135 LGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDGVRLKA 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T  +  HL      +E  +AKA +F+  LE+     +N DD     +   +   G+K
Sbjct: 195 GAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGERGLK 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + GK + AD ++   +  +    +     G++  V    IG   A+N+L   G+   
Sbjct: 255 -LTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGLAIA 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +    I+ L       G   R   A  +     +   Y+  P ++ +A+  L    P
Sbjct: 314 AGDEAPRVIETLPGLTTVRG---RMELAAVRENGAAVFVDYSHKPGALASALQSLR---P 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----------VLALK 415
           H  GR + V G   +   L +    + A   +      V+++  +             + 
Sbjct: 368 HVMGRIVVVFGAGGDRDRLKRPLMGEAARQFA----DVVYVTDDNPRSEDPAAIRAEVMA 423

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A P +I V          L    +L  GD +++  K 
Sbjct: 424 GAGPDAIEVG---DRAEAILRGVDALQPGDALLIAGKG 458


>gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 514

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 90/489 (18%), Positives = 176/489 (35%), Gaps = 58/489 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALNK---LAVAARLRSKATIIAITGSVGKTTT 122
             ++ +     IGS+    +  ++D L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFE 166
             +L   L  + K  A  G+  N       +A    D                 +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223
           +    + + R          A+ T +   HL   S +E     K ++F      EK G  
Sbjct: 186 VSSHSIAQKRI--SGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGIS 243

Query: 224 FLNYDDSFFELLKAKSHALG--IKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L +        + T  +  + +N D F +   K     S        + 
Sbjct: 244 VLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQG 337
           +++    +G     N +  + I+  L   +    K +  F    GR ++ +     +++ 
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSRS 363

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+I + Y   P  +K  +  + ++    EG+ I V G   +     +     +AE LS
Sbjct: 364 LPTVIVD-YAHTPDGLKKVLQSIKKL---CEGKLITVFGCGGDRDRSKRPLMGSIAEELS 419

Query: 398 LYNISHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                 ++++  +  +             +K     +I +   + ++    F        
Sbjct: 420 ----DQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKK---- 471

Query: 445 DVVVV--KS 451
           D++++  K 
Sbjct: 472 DIILIAGKG 480


>gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 486

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 165/458 (36%), Gaps = 53/458 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G ++DSR +     F A  G   +G DFI    +K      V       +     
Sbjct: 23  DYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAIVARPEVKIEGA 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                ++   A  ++A          + A+TG+ GKT+  E+            A IG+ 
Sbjct: 79  VHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMIAGHKAASIGTL 138

Query: 144 NNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                       M                  D+   IFE     L + R  +   +    
Sbjct: 139 GVITAENSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR--SDGAKVIAG 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T+ +  HL     +E   +AK  +F+  +   GT  +  DD   + + A     G+K 
Sbjct: 197 AFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTVIAHVQKRGLK- 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G+   A  +L   +  S+   + + +QG+S ++    IG +   N L+  G+V   
Sbjct: 256 LIDIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGLVLAT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+   + AL++  P  GR +R   + N     +    Y   P  ++AAI  L    PH
Sbjct: 315 GGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYV---DYAHTPDGLRAAIEALR---PH 368

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA---- 417
            EGR   V G     G+  +    ++ ++ +     HV ++     G     ++      
Sbjct: 369 TEGRLWVVFGA---GGDRDKGKRPEMGKIAANL-ADHVIVTDDNPRGEDAATIRKEILVG 424

Query: 418 --LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L   I        + +F  I+ +   GD+V++  K 
Sbjct: 425 APLAEEIGGR----KEAIFSAIKRA-EKGDIVLIAGKG 457


>gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 511

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 171/483 (35%), Gaps = 61/483 (12%)

Query: 17  HSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           + +GI+P        +N IS +S+ +     F  + G + DG  F + A++ GA   ++ 
Sbjct: 11  NLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIG 70

Query: 72  TDMVASIGSLSI-PVFGVDDVLGALNK---LAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     IGS     +  ++D L  +          R   K  +I +TG+ GKTT   +L 
Sbjct: 71  SAAKEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLE 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELGMSH 171
             L    K  A  G+  N       +A    D                 +F I E+    
Sbjct: 131 YLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHS 190

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYD 228
           + + R          A+ T +   HL   S +E     K ++F     +EK G   LN+D
Sbjct: 191 IAQKRI--SGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVLNHD 248

Query: 229 DSFFELLKAKSHALG--IKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           D +   L +        + T  +  + +N D F +   K     S        + +++  
Sbjct: 249 DPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKEKIQLFV 308

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL--ID 343
             +G     N +  + I+  L   +    K +  F    GR ++     +    +L  + 
Sbjct: 309 PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDVARSLPTVI 368

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  +K  +  + ++    +G+ I V G   +     +     +AE  S      
Sbjct: 369 VDYAHTPDGLKKVLQSIKKL---CKGKLITVFGCGGDRDLGKRPLMGSIAEEFS----DQ 421

Query: 404 VWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           ++++  +  +             +K     +I +   + ++    F        D+V++ 
Sbjct: 422 LFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKK----DIVLIA 477

Query: 450 -KS 451
            K 
Sbjct: 478 GKG 480


>gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 491

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 108/462 (23%), Positives = 173/462 (37%), Gaps = 43/462 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V+GI+ DSR + P+  F AI G   DG  FI  A+Q+GA  ++   D  A++ 
Sbjct: 16  GCGHDPEVSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAIISTPDACAAVR 75

Query: 80  S--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                I     DD   AL+ +A A        ++A+TG+ GKT+T E +           
Sbjct: 76  QAGHDIACIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAA 135

Query: 138 ACIGSYN-----------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLT 179
           A IG+                   + + + LTL  +    VD    E     L + R   
Sbjct: 136 ASIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRL-- 193

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSF--FELLK 236
             V    A  + +   HL     ++   +AK  +F+  L   G    N D      E L+
Sbjct: 194 DGVPLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALR 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +   G+  +   G+S +A  +L +     +   ++V+  G   EV     G +   NM
Sbjct: 254 AIAVKRGL-DLRLVGESGDA-IRLLRVTPRPDGQVLDVECNGTRHEVATRLPGRYQVDNM 311

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+ +     +  AI  L       GR + +   L  G    +D  Y   P +++  
Sbjct: 312 LLAAGLAASSRDMMSAAINCLPALVGVRGRME-HAVTLPNGAAVYVD--YAHTPDALE-- 366

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             +L  + PH  GR +AV G   +     +     +A  L+   I               
Sbjct: 367 -RLLLSLRPHASGRLVAVFGAGGDRDRGKRPLMGAVAGRLADMAI---VTDDNPRTEDAA 422

Query: 417 ALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
           A+ R +     +  D            S L  GDV+VV  K 
Sbjct: 423 AIRREVMAGAPDASDIGGRRQAIAEGLSRLKAGDVMVVAGKG 464


>gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
 gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
          Length = 504

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 89/455 (19%), Positives = 154/455 (33%), Gaps = 48/455 (10%)

Query: 33  DSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR I       FFA +G   DG D+I  A+  GA  VV   +        ++P  GV  
Sbjct: 27  DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEGFDWNPEWNVPHLGVMG 86

Query: 91  VLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +      +A A          +IA+TG+ GKT+  + L  +LS++ K  A IG+    + 
Sbjct: 87  LKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLGVTVF 146

Query: 149 V--------------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           V                       LA++  +    +  +  S +G  +   + +   + +
Sbjct: 147 VNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVA-MEASSIGIDQGRLNGIPIDVGL 205

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T     HL     +    +AK ++F+         LN DD     L          T Y
Sbjct: 206 FTNFTRDHLDYHHDMASYKAAKRKLFDW-PGLKHAVLNLDDPMGRELATALKTRISLTGY 264

Query: 249 SFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    +NAD      +    +  +      +     S  +    IG   A N+L  LG++
Sbjct: 265 TL---ENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNASNVLGVLGVL 321

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A++ L    P  GR ++           L+   +   P +M+  ++ L  +
Sbjct: 322 LAAGIHWDDAVRTLGDLLPPAGRMQQM----GGKNAPLVVIDFAHTPDAMEKGLATLRHV 377

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    G+   V G     G+  Q     +  V    +   V          K+ + + I 
Sbjct: 378 ANERNGKLWCVFGC---GGDRDQGKRPQMGSVSETADFVIVTSDNPRSEDPKEIMKQIIS 434

Query: 424 V-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    E      L         DV+ +  K 
Sbjct: 435 GMEKEPQVYEDRAMAILQAVRQASQNDVIFLAGKG 469


>gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
          Length = 497

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 164/484 (33%), Gaps = 58/484 (11%)

Query: 5   WTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               DLL+ I+  S      +    ++ I  DSR       F AIKG   DGHD+I  A 
Sbjct: 1   MKLKDLLKDIEYISNIKESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYIKGAY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
            KG+ + ++N D+     ++      V D    L++++         K  ++ ITG+ GK
Sbjct: 61  DKGSRVFIINHDLEIEDDAIK---IIVPDSRRVLSRMSAIFFSEPTKKLKVVGITGTKGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPV------------DVDFGIF 165
           TT    +   L+        IG+     +     TL   P             D      
Sbjct: 118 TTISNYIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEMLDAGVECV 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
            + +S  G +      +   I V T ++P H+        E     K+ +F GL K G  
Sbjct: 178 AMEVSSSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLF-GLCKYG-- 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---- 279
            +N DD   + +   +          F   K ++ +    +     + + V    K    
Sbjct: 235 IINVDDENAQYMVDHAKCPTC----GFSIDKESNIKAGNIELTRSSASLGVDFDYKLKDQ 290

Query: 280 -SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++       G     N L  +G+      D D  ++ALS          R         
Sbjct: 291 DTVRTHICSPGEFSIYNALAVIGVCDHFGIDRDKMLEALSDAKVDG----RVEVIPVLDN 346

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+I + Y  N  S++  +  L +   +   R I V G +   G  +     +L +V + 
Sbjct: 347 ATVILD-YAHNGLSLENVLDTLLKYDHN---RMICVYGSI---GGRAAIRRKELGDVAAR 399

Query: 399 YNISHVWLS----GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +  +        + + D +  S       VH                 DGD+V+V
Sbjct: 400 LCDVSIITTDNPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGDMVLV 459

Query: 450 --KS 451
             K 
Sbjct: 460 TGKG 463


>gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 510

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 161/484 (33%), Gaps = 51/484 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P W    LL+     S G+     +  + +DSR   P   F A+ G    G      A+
Sbjct: 8   QPDWRLSTLLEGFAAVSPGL--DVPLRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEAL 65

Query: 62  QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVG 118
            +GA  V+            L +P   V  +   L ++             +I +TG+ G
Sbjct: 66  ARGAVAVLWEPAPGVEAPVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTDG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVD-----VDF 162
           KT+  + L   L         IG+             +     L+L R   D     V +
Sbjct: 126 KTSVSQFLAQTLYQESGRCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRY 185

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L + R   +     IAV+T ++  HL     +E  A AKA +F       T
Sbjct: 186 TVMEVSSHALVQGRI--NGAALDIAVLTNLSRDHLDYHDSMEAYAEAKARLF-RWPGLET 242

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQG 278
             LN DD+F   L A+     ++ I  +G +  +      +    +   +     V    
Sbjct: 243 AILNLDDAFGRKLAAELAEREVQ-ILGYGLAAASGEIEQVRGESVEYRPDGLAFSVVTPW 301

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  +    +G     N+L  L  +  L   +  A++ L+      GR +R+        
Sbjct: 302 GSGRLETGLLGAFNVHNLLAVLAALLQLGLSLTDALERLTHVRTVPGRMERF---SGGKG 358

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            TL+ + Y   PA++   +  L     H EGR   V G         +          S 
Sbjct: 359 ATLVVD-YAHTPAALAQVLQALR---MHCEGRLWCVFGCGGNRDPGKRPLMAR----ASE 410

Query: 399 YNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V L+  +            +     R   VH          +  S    GD+V+V
Sbjct: 411 QFADRVVLTSDNPRHEDPQDIAREVMTGFERPAEVHQELDRQAAVEWAWSHAAAGDLVLV 470

Query: 450 --KS 451
             K 
Sbjct: 471 AGKG 474


>gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 535

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 193/521 (37%), Gaps = 70/521 (13%)

Query: 5   WTFHDLLQAIQ------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               DLL++++            + +  +  I+  S+ +     F  IKG   DGH++  
Sbjct: 1   MKLTDLLKSVKIDSSCHNQLKIELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHNYAK 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGS 116
           HA  +GA +++V       I  + +    V D   AL  L+            I  +T +
Sbjct: 61  HAASQGATVIIVEDF----IEDIHVIQLKVSDSREALAILSSNFFDHPSKSMNIFGVTAT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DV 160
            GKTT   M+     + +     IG+    I   + ++R+                  ++
Sbjct: 117 NGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHFARMRDREI 176

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                E+  S L   R   +     +     I+P H+      +    AKA +     K 
Sbjct: 177 THVSMEVSSSALELKR--VYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLIRNASKA 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ-- 277
            T  LN D+     L+ ++ A     + +FG ++K+    +   +  S      V ++  
Sbjct: 235 STAILNLDEPLLIPLEKETEA----QVITFGIENKSGTITVSDIRFSSGIPSFTVNIRKP 290

Query: 278 -----GKSMEVV-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                GK++E+         +GYH   N L  L    +    ++   + +  F   E   
Sbjct: 291 FNTLSGKTIEITSFDLEMSVLGYHSIYNALTALVTGLVNDLPIEDIQRGIKNFQGVE--- 347

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMC 379
           +R++   ++ F  + D   N N  ++ + +  +S +  +      A+ G        ++ 
Sbjct: 348 RRFQVLYDKEFKVIDDLLLNQN--NIDSCMETISHLDYNELHLVHAIRGSNGPAHSTEIA 405

Query: 380 EMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGL 433
           E   L++ FH   +A+++     SHV           DA         I V + + +D  
Sbjct: 406 E--SLTKWFHKMKIAKIILTTAPSHVNKIDEVTEEELDAFLKVMHQNKIEVTFFKELDDT 463

Query: 434 FLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLEEFPAIQ 472
            LF    L   D++++  ++S   G  + + LL E +P + 
Sbjct: 464 LLFGVEQLNVADILLISGAHSMDQGARKTLELLKEIYPQVD 504


>gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
 gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
          Length = 485

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 144/405 (35%), Gaps = 31/405 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I   S+       V  +  DSR +     FFAI+G   DGH +I   V+ G
Sbjct: 1   MQLQDVLYGITITSLVGNTSREVTALVFDSRKVVKDSVFFAIRGTMSDGHQYIDDTVEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A +V+   +++  I         V++   AL ++A        SK  +I ITG+ GKTT 
Sbjct: 61  ASVVIC--EVLPEIRRELATYIQVENSSVALGQMAANFYGHPSSKLKLIGITGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE------IR 176
             +L      +      I +  NHI   +  +         + EL  S + +      + 
Sbjct: 119 ATLLFKLFRELGYGVGLISTVQNHINDVVVPSTHTTPDPIALNELLQSMVDDGCEYCFME 178

Query: 177 FLTHLVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             +H V  H          V + I   HL      +    AK   F+ L        N D
Sbjct: 179 VSSHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKKAFFDVLPANAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T  ++   + ADF+ +  +         + L     +V    +
Sbjct: 239 DRNGMVMLQNTKA----TKKTYALKQLADFKAKIIENSFSG----LHLDIDQADVFFKLV 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L  +    + ALS     EGR                   Y  
Sbjct: 291 GSFNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSKQQIIGIV----DYAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            P +++  +S +  I    E + I ++G   +  +  +     +A
Sbjct: 347 TPDAVQNVLSTIQDIRKGTE-QVITIIGCGGDRDKTKRPVMAQVA 390


>gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 575

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 151/390 (38%), Gaps = 34/390 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   +     G    G V GI+ DSR++ P + + A+ G  + G DF   A   GA
Sbjct: 65  SLGELAARLGA---GPQDAGEVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGA 121

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
             ++ +        +  +PV   DD  G +  LA     R       I ITG+ GKTTT 
Sbjct: 122 AAILTDPAGAERAAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTA 181

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRF 177
            ++   L    ++   IG+    IG     +    P   D       M   G     +  
Sbjct: 182 YLVEGGLRGAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEV 241

Query: 178 LTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            +H +           +AV   ++P H+   SG+E+   AKA++F   E++    +N+DD
Sbjct: 242 SSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTP-ERSKLGVVNFDD 300

Query: 230 SFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
            +   L  ++       + +F      +A+++    +     S   V   +G+ +     
Sbjct: 301 EYGRRLVDEASV----PVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAP 356

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +  +++   D   A   ++      GR +R     + G   L    Y
Sbjct: 357 LPGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERI----DAGQPYLAVVDY 412

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
                ++++ +  L +++   EGR   VLG
Sbjct: 413 AHKTDAVESVLRSLRKVT---EGRVHIVLG 439


>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
 gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
          Length = 509

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 105/508 (20%), Positives = 192/508 (37%), Gaps = 65/508 (12%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L+ I+   I         ++ +S +S +I     F AIKG   DGH +I +A  
Sbjct: 1   MKLREILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKN 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
            GA + VV          + IP   VD+   +L  LA            +I IT + GKT
Sbjct: 61  HGAIVAVVE-----DFKEVYIPQIKVDNTRKSLADLAKNFYKDPSKDLKVIGITATNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLAR-------------MPVDVDFGI 164
           TT  ML   LS  K     IG+       + +P  L               +  ++   +
Sbjct: 116 TTSFMLKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEMLDKNISHVV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  S    +R   + +   I     ++  H+      E     K++I    +K     
Sbjct: 176 MEVSSSAQQMLR--VNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILNAKKGSFAL 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWM---------EV 274
           LN D+ +   LK K+ A    ++ +      ++DF + K    +              E+
Sbjct: 234 LNMDNEYIASLKEKTKA----SVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRDIKEI 289

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L+ +S EV    +GY    N ++ + +  IL  D +  + AL  F   E   +R+    
Sbjct: 290 NLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVE---RRFELIY 346

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           ++ F  L  + + AN  ++   ++ LSQ++        A+ G+     EL+++    L  
Sbjct: 347 DEKFKVL--DDHFANEKNIDVTMTTLSQMNYKNLHILYAIRGNRG--VELNRAVDERLCF 402

Query: 395 VLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSET----------MDGLFLFIQSSL-- 441
            L     S ++       +  KD + +     Y+E            + L   I + L  
Sbjct: 403 WLKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKK 462

Query: 442 -VDGDVVVVKSSNSCGFYRLINLLLEEF 468
              GD+V++  +   G  +     +E++
Sbjct: 463 AQSGDIVLL--AGCQGMDK-GAKFVEKY 487


>gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
 gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
          Length = 487

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 166/476 (34%), Gaps = 56/476 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           +QA++  S  ++ Q  +    I+S  + P + F   +G  +D H ++  A++ GA  V+ 
Sbjct: 3   IQALK-RSAAVLEQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIA 61

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAV-AARLRSKATIIAITGSVGKTTTKEMLTIA 129
           N  +      L IPV   +    +L  +         K   I +TG+ GKTT    L   
Sbjct: 62  NRTLH-----LDIPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQM 116

Query: 130 LSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLG 173
           L+    T A IG+                   +TL  +  D     V   + EL    L 
Sbjct: 117 LNQS-STSAYIGTLGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHALA 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           + R     +   + +IT I   HL      +    AK +I + ++  G   +N DD    
Sbjct: 176 QDR--AGFLDLEVGIITNIGRDHLDYHRTKDAYVQAKLQIIDRIKPGGYAVINMDDPHAP 233

Query: 234 LLKAKSHALGIKTIYSFGK------SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            + A+ H  G     SF        +++ADF  ++           +  +GK   V    
Sbjct: 234 AMFARCH--GRVKTVSFSIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQM 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 +NML     +      +D    A  +       G+     LN G   L+D  Y 
Sbjct: 292 PFLFNVENMLAMACALHAQGWTLDQI--ASGLTTIIPPDGRAQFQTLNNGATGLVD--YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N   +     + S I        + V+G   +  + + +    + E+ + Y+   V+  
Sbjct: 348 HNLDGLA---RLFSDIPNQTFRHTLTVVGVTGDRIQDAAA----IGELCARYSDLVVFTM 400

Query: 408 ----GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
               G     +  AL   I      V             +     GD++VV  K S
Sbjct: 401 DNPLGIDQADIFRALTSRIESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGS 456


>gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
 gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
          Length = 494

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 150/454 (33%), Gaps = 40/454 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
              + G+++DSR +     F A+ G    G  F+   + +GA  ++ +T      G    
Sbjct: 21  DPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTDTAGAEIAGEAIA 80

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                +   +D   AL+  A          + A+TG+ GKT+    L +  + +      
Sbjct: 81  RAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLRMIWTELGHQAVN 140

Query: 140 IGSYN----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+            +    P+TL R         V     E     L + R     V+ 
Sbjct: 141 LGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRRL--DGVQL 198

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T     HL      E   +AKA +F   L + G   +N  D     ++A + A G
Sbjct: 199 SAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGAKMRAIAAARG 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I + G+    D  L   +  +    +      +      + IG   A+N+L+  G+ 
Sbjct: 259 -QEIITVGRGLG-DIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAENVLVAAGLA 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       L       G   R   A  +     +   Y   P ++  AI  L   
Sbjct: 317 IASGEDPVQVFDTLPHLSTVRG---RMELAATRENGATVFVDYAHTPDAIATAIKALR-- 371

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA- 417
            PH  GR +A++G   +     +          +  N   V ++          A++ A 
Sbjct: 372 -PHVLGRLVAIVGAGGDRDATKRPLMGQ----AAHENADTVIVTDDNPRSEDPAAIRAAV 426

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +  +             L     L  GD +++  
Sbjct: 427 MGGAPDALNVGDRAEAILRGVDMLEPGDALLICG 460


>gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
 gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
          Length = 532

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 35/389 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL +           +  V G+S+DSRSI P + + A+ G    G  F+  A   GA 
Sbjct: 47  LADLARTAGAPVPAGAAEVLVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAV 106

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +   V    +  +P+  V D    L  +A            ++ ITG+ GKTTT  
Sbjct: 107 AVLTDPAGVERALTAGLPLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSF 166

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELG 168
           +L   L  +    A +G+    IG  +  + M                   V +   E+ 
Sbjct: 167 LLDAVLRRLGP-AALVGTIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVS 225

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   +      R  +A  T ++  HL      E+  +AKA +F   E+     +N D
Sbjct: 226 SHALA--KGRVDGARYSVAGFTNLSQDHLDFHKTFEQYFAAKASLFTP-ERCDLAVVNID 282

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHG 287
           D +   L A++    +  + +   +++AD+ +    Q     + ++++  G+++ V    
Sbjct: 283 DKYGRRLAAQT----VVPLVTVSTTRDADWTVAGTHQSEHGGTVIDIRGPGEALTVEIVL 338

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L+ + ++  +    D     L           R    L      +I + + 
Sbjct: 339 PGDFNVANALLAVAMLRQVDVPADEIAAGLRTARVPG----RMETFLRPDGLAVIVD-FA 393

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
             P +++ A+      +   +GR  AV+G
Sbjct: 394 HTPDAVELALRAARGAT---KGRLYAVVG 419


>gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 487

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 156/459 (33%), Gaps = 45/459 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           VP   V+GI +DSR +A  + F AI G   DG  +I  A+  GA  ++     +A     
Sbjct: 16  VPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYIDAAIDAGAAAIIAEAPGMAVEQRR 75

Query: 82  SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + V G   V   L+++          K  ++ +TG+ GKT+   ++     ++    A 
Sbjct: 76  GVVVIGFSGVREHLSRIAGNFFGHPSEKMNLVGVTGTNGKTSVTHIMAQLAKALGMEAAV 135

Query: 140 IGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+  + +   L   R                +    +    E+    L  I+     + 
Sbjct: 136 IGTTGSGLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVAMEVSSHAL--IQRRVEALH 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A IT I+  HL     +E   +AK  +F          +N DD      +     L 
Sbjct: 194 FAAAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNR-VVNADDDTLSHWQQD--DLA 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +           Q    +   + S   +  QG+S  V    +G     N+L  + ++
Sbjct: 251 DLWVSLNASPNEPCLQATGVQFHEQGSVFSLNWQGESCVVETPLLGRFNVYNLLCAVAVL 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +    KA     P  GR +    A +     L+   Y   P ++     VLS +
Sbjct: 311 LKLNKPLADIGKACGRLQPVPGRME----AFHNNQSPLVVVDYAHTPDALH---QVLSAL 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H +GR   V G     G+  +     + +V + Y    V ++  +         +  +
Sbjct: 364 RLHCKGRLWCVFGC---GGDRDRGKRPQMGKVAADY-ADVVVVTDDNPRTEPAEQIIEDI 419

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +     V          +         DVV++  K 
Sbjct: 420 LTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKG 458


>gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 495

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 170/474 (35%), Gaps = 45/474 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A+    +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   V+ 
Sbjct: 6   LRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIA 65

Query: 71  NTDMVASIG----SLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             D  A  G    S  IPV  +  +   L+ L      +  +   +I +TG+ GKTT  +
Sbjct: 66  EADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTITQ 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMS 170
           +L      + +T A +G+  N +   +               L R  V     +  + +S
Sbjct: 126 LLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    +  T ++  HL     +E    AK  +F     +G   +N DD 
Sbjct: 186 SHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFS-THHSGEKIINADDE 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +   AKS      T+        A       +       + +          +    +
Sbjct: 245 VGQRWLAKSPDAVAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLESRLM 304

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L+    +  L   +D   K  S   P  G   R       G  T++ + Y  
Sbjct: 305 GAFNVSNLLVAAATMLALGYPLDVLCKTSSQLQPVCG---RMEVFTAPGKPTVVVD-YAH 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++ A+        H +G+   V G   +  +  +     +AE  +      V ++ 
Sbjct: 361 TPDALEKALEA---ARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQYA----DRVVVTD 413

Query: 409 FHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            +  +      + D L   +   +++ + G    +  ++      DV++V  K 
Sbjct: 414 DNPRSEEPRAIMADILNGMLDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKG 467


>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
 gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
          Length = 486

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 105/480 (21%), Positives = 169/480 (35%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + LL+ ++   I    +  +     DSR +    AF  I G   DGHDF+    QKG
Sbjct: 1   MKLNQLLERLEYEVIQGSDEAEITTFINDSRKVEKGSAFVCISGAVVDGHDFVEEVAQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V  ++ A        V  V D   AL  ++ A       K  II ITG+ GKTTT
Sbjct: 61  AAAVIVEREVEAPEDMT---VIRVADSRYALALMSAAYFGYPADKMKIIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             M+   L  +      IG+    I                +    ARM       +  +
Sbjct: 118 TYMIKSILEGVGHKVGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARMVEAGCDSVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    K  +F+          
Sbjct: 177 EVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFQQCRLG---IA 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSME 282
           N DD +FE + +++       + +FG S+ AD +       S   ++ V          +
Sbjct: 234 NVDDEYFEDVFSRATC----RVETFGFSEKADLRAVDTHLVSRPGYLGVAYHVSGLMDFD 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +       V+   KAL V + K     R         FTL+
Sbjct: 290 VEIDIPGKFSVYNSLTAIAVCRHFQVPVEQIKKALKVANVKG----RIEMIPVSDEFTLM 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  S+++ ++ L +  P    R + + G     G  S+    ++ EV       
Sbjct: 346 ID-YAHNAMSLESLLTTLKEYEP---ARLVCLFGC---GGNRSRERRYEMGEVSGRLADL 398

Query: 403 HVWLSG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S         A+ D +   IH     Y E         +       GDV+V+  K 
Sbjct: 399 SIITSDNPRFEEPQAIIDDIKTGIHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGKG 458


>gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actF]
          Length = 526

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 143/391 (36%), Gaps = 33/391 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL +A+     G        V GI+ DSR++ P + + A+ G  + G DF   A   G
Sbjct: 22  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 81

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A   + +      + +  +PV  V D  G +  LA             I ITG+ GKTTT
Sbjct: 82  AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 141

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRF--- 177
             ++   L +   +   IG+    IG     +    P   D       M   G       
Sbjct: 142 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 201

Query: 178 ---------LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        V   +AV   ++P H+   SG+E+   AKA++F    ++    +NYD
Sbjct: 202 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTR-ARSRRGVVNYD 260

Query: 229 DSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVH 285
           D +   L  ++       I +F      +AD++    +     S   V    G       
Sbjct: 261 DEYGRRLITEAEV----PIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPARA 316

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +  ++    D   A + +       GR +R     ++G   L    
Sbjct: 317 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV----DEGQPYLAVVD 372

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y     ++++ +  L +++   EGR   VLG
Sbjct: 373 YAHKTDAVESVLRSLRRVT---EGRVHVVLG 400


>gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
          Length = 477

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 166/449 (36%), Gaps = 37/449 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++++S+ +     F AI G  +DG D+I  A++  A  V+  +   +   + ++P FG
Sbjct: 13  KDLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESANYSKNKAWNVPSFG 72

Query: 88  VDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           ++++   + ++A            +I +TG+ GKT+    L    SS+ ++   IG+  +
Sbjct: 73  IENLNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIGTLGS 132

Query: 146 HIGVPLTLARMPVDV---------------DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                        D                 +   E+    + + R + ++V   I V+T
Sbjct: 133 GEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNR-IANIV-FDIKVLT 190

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +      K + F    +     LN DD   + L  +      K + ++
Sbjct: 191 NVTRDHLDYHKTLANYQKIKKQFFSD-GECKNFILNIDDCIGQELLMEVD-WSEKNLTTY 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                AD   +       +   ++  + K+  +  +  G H   N+L  +G +      +
Sbjct: 249 AIDVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFSI 308

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  IKA+ +     GR +  + +       ++D  Y   P ++K  +  L  IS +    
Sbjct: 309 DQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLD--YAHTPDALKNVLQSLRAISDNE--- 363

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHY 426
            I + G     G   +     +A V + Y    +  +        L +   + ++I   +
Sbjct: 364 IILLFGC---GGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSH 420

Query: 427 S--ETMDGLFLFIQSSLVDGDVVVV--KS 451
              E+ +         + +  ++++  K 
Sbjct: 421 VVIESREQAIKKAIGMMEENSILLIAGKG 449


>gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 493

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 178/475 (37%), Gaps = 43/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             DL+ A+   +      G        + G++ DSR++AP   F A+ G   DG  FI  
Sbjct: 3   LDDLIGAVPARAALGGHPGLGGHPGLAIAGLTADSRAVAPGWLFAALPGVKADGRAFIPA 62

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA  V+               +    +   A  ++A A      AT++A+TG+ GK
Sbjct: 63  ALAAGASAVLAPEGTALP-PDAPAALVTAANPRQAFARMAAAFAGAQPATVVAVTGTNGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFG---IF 165
           T++          + +T A +G+                  P++L +M  ++        
Sbjct: 122 TSSVSFTRQIWDRLGRTAASLGTLGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDAL 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIF 224
            +  S  G  ++    VR   A  T +   HL     ++   +AKA +F E L + G   
Sbjct: 182 AMEASSHGLDQYRLDGVRLSAAAFTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAV 241

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD  F  L A     G +++  +G+S     +L      +    ++++L G+   V+
Sbjct: 242 LNADDPAFPTLAALCRDRG-QSVLDYGRSAK-TLRLAGVSAKAHGQSLDLELFGRHHSVL 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+L  LG+     A VD A+  L+      G   R      +     +  
Sbjct: 300 LPLVGDFQAMNVLCALGLAIATGAPVDAAVATLASLEGVPG---RLEMVARRASGAPVYV 356

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  +   ++ L  + PH  G+ + V G     G+  ++    +   ++       
Sbjct: 357 DYAHTPDGL---VTALRALRPHCRGKLVCVFGC---GGDRDRAKRPLMGRAVAE-GADVA 409

Query: 405 WLSGFHVLALK-DALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVV--KS 451
            L+  +  +    A+     V   + +     D       + L   D++V+  K 
Sbjct: 410 ILTDDNPRSEDPAAIRAEARVGCPDAIEIDGRDAAIRAGVALLGPNDLLVIAGKG 464


>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
 gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
          Length = 1084

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 156/478 (32%), Gaps = 49/478 (10%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                 LL       +       +  ++ DSR + P   FFA+KG   DG       +   
Sbjct: 594  MKLDALLSHSAIVKVVGPTDRDITHLTYDSRRVKPGTLFFALKGEKVDG----TAFIDAA 649

Query: 65   AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
                        +          V +    +   A A          I  +TG+ GKTTT
Sbjct: 650  IAAGAEAIVTENATFRTRATNIVVANARNTMADFAAAFYQNPARALKIAGVTGTNGKTTT 709

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
              ++     + +     +G+    IG  +  A         + E              + 
Sbjct: 710  AFLIKHICEAAQLRCGLLGTVRYEIGDRVLPASRTTPESLDVHEMLWQMRSAGCKACAME 769

Query: 169  MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIF 224
            +S    ++     V    A+ T +   HL     +E    AKA +F  L    +K G   
Sbjct: 770  VSSHALVQARVRDVEFDAAIFTNLTQDHLDYHKTMEAYFEAKARMFSELAAQKKKQGKAI 829

Query: 225  LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +N DD +   L   +       I ++G   +ADF+    +     +  ++   G+S  V 
Sbjct: 830  INLDDRYGAQLV--TRFGKAIPITTYGLGVHADFRASNVRIDFHGTSYQLDAGGRSYLVR 887

Query: 285  HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               IG     N L  +   + +  +V   + AL+      G   R      Q  F +  +
Sbjct: 888  LPLIGQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPG---RLEAVPAQRQFRVFVD 944

Query: 345  SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             Y     ++   I    +++P    R I V G     G   ++    +  V+   +  H 
Sbjct: 945  -YAHTDDALLNVIKTCRELNP---ARLIVVFGC---GGNRDKTKRPRMGAVVDQ-HADHA 996

Query: 405  WLSGFHVLA------LKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  +         ++D  P     +Y    +  + +F  + +     D++++  K 
Sbjct: 997  IVTSDNPRKEEPLAIIEDIKPGMRRGNYEVIVDRREAIFKAV-AMAQPRDIILIAGKG 1053


>gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 488

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 164/467 (35%), Gaps = 48/467 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I     +  +++DSR+      F AIKG   DG  +I  A+  GA  V+   D     
Sbjct: 10  IDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQH 69

Query: 79  GSLS----IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +     IP+     +   L++LA           T++ +TG+ GKTTT ++L      
Sbjct: 70  LQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQL 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIR 176
           +  T A +G+  N +   +  A                      DF   E+     G ++
Sbjct: 130 LGHTGAVMGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSH--GLVQ 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LL 235
                V    AV T ++  HL     +E  A+AK  +F  L+ +    ++ DD      L
Sbjct: 188 HRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELD-SRYQIIDADDPVGAVWL 246

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               HA+ +     F   +    +    +   + + ++ +    + E+    IG     N
Sbjct: 247 AEMPHAVAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSN 306

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L+    +  L   +   I ++       G   R          T+I + Y   P +++ 
Sbjct: 307 LLLVTATLLTLGYPLSGLINSVHKLTGVCG---RMEILHAPQKPTVIVD-YAHTPDALEK 362

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
           A+        H  G+   + G   +     +     +AE L+     HV  +  +     
Sbjct: 363 ALQA---ARLHCRGKLWCIFGCGGDRDSGKRPLMARIAEQLA----DHVIATDDNPRTEE 415

Query: 414 ----LKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D L   +H   V               S V+ DV+++  K 
Sbjct: 416 PKKIMADILNGFVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKG 462


>gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
 gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
          Length = 501

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 164/460 (35%), Gaps = 47/460 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V GIS +S S    + F  + G   DG +F   A++ GA   +++            
Sbjct: 27  EREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQSAMEVGAVAAIISPQAAQKFPPKDD 86

Query: 84  P-VFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  V+D   + A    A       +  ++ ITG+ GKTTT  ++   L+  +K  A I
Sbjct: 87  DCVIIVEDIITVAAQIAAAFYDYPAQQLKMVGITGTNGKTTTTHLVEYFLNQCQKPTALI 146

Query: 141 GSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+           A                 +  + ++ + E+    L + R        
Sbjct: 147 GTLYTRWPGFERTAVHTTPFAPELQEQLAEAVAANNEYCVMEVSSHALVQGR--VKQCPF 204

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++V T +   HL     +E+  +AK  +F          +N DD + + L     +   
Sbjct: 205 QVSVFTNLTQDHLDFHKDMEDYFAAKRLLFTPDYLQEKAIVNLDDPYGKRL---IDSFQT 261

Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++++  +   ADF        +      +     ++E     +G     N+L  +  V
Sbjct: 262 EQVWTYSVEDTKADFYTSNLTYQANGVTGTLTTPFGNIEFTSPLVGQFNLSNVLAAVATV 321

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  DV   ++ L  F    GR +R +    Q    ++D  Y   P S++   ++L   
Sbjct: 322 LYLGLDVREVVEKLPHFLGVPGRMERVQINDKQDISVIVD--YAHTPDSLE---NLLKAA 376

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD--- 416
            P  +G+ I V G     G+  ++    + +  +      V  S          + +   
Sbjct: 377 RPFIKGKMICVFGC---GGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDVL 433

Query: 417 -ALPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVV--KS 451
             +P +I                +Q++   GD V++  K 
Sbjct: 434 TGIPETIEPLVISDRAKAINTAILQAN--PGDGVLIAGKG 471


>gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 476

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 161/470 (34%), Gaps = 55/470 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I   S  I     + G+S +S+ I     F AI+G  +DGH +I +A++ G
Sbjct: 1   MKIEKILKEISYISKNIQNDKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A  +V   D V       I    V+D   AL K++            +I +TG+ GKTTT
Sbjct: 61  ASTIVYTNDDVEFKNE--INYIKVEDARLALAKISNFLSDFPSKSLRMIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFG--------------IFE 166
             +++  L+ + +T A IG+           T    P   D                + E
Sbjct: 119 ANIVSFLLNKLGETCANIGTDGAFFNGKTLPTEHTTPEITDINYILNEAKKDGIKNVVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L   R   + +     V T ++P H+     ++    AK  +    +K     +N
Sbjct: 179 TSSHGLCLKRN--YGIAYEYGVFTNLSPEHMDYHKTMDNYFKAKMILLNHSKKQ---VVN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + +  K        K   +   +++++++    K+        V      ++    
Sbjct: 234 LDDDYGKKAKEI-----FKDALTISINEDSNYKAENIKRVDMGLEFFVN----GVKFHLK 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  + I + L   ++   KAL  F   + R +     L       I   +
Sbjct: 285 RFGMYDIYNSLCAIAIANDLGFKLEEISKALEGFKGVKSRFEFIENDLGIN----IVVDF 340

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                S ++    L       + ++ AV G     G+ +      L  + + Y+I  V  
Sbjct: 341 AHTTTSFESLYKDL-----PKDRKKFAVYG---ISGDRTPDIRRGLGRISAKYDIFSVIT 392

Query: 407 SGFHVLALKDALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVV 447
           +        + +   I     E                +  S    GD V
Sbjct: 393 TDDPKFDTFENISNQIKEGVEENNGECIIIRNRKEAIKYAISHAKKGDFV 442


>gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
          Length = 483

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/469 (22%), Positives = 181/469 (38%), Gaps = 51/469 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+ ++   +         G+  DSR IA    F A++G   DGH FI  A+QKGA LV 
Sbjct: 8   ILEGLEYKVLQEPETNIFTGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVF 67

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+ ++    G   I +  +   LG L         + K  I+ +TG+ GKTTT  +L   
Sbjct: 68  VSKEVSCQQGIGYILIKNLRKHLGVLASNFYDW-PQKKMKILGVTGTNGKTTTTYLLEQL 126

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLA------------RMPVDVDFG----IFELGMSHLG 173
           L    +  A  G+    IG  +  A             +    D G    + E+    L 
Sbjct: 127 LGE--EKVARFGTIEYKIGKEVIEAPNTTPESLDLIKMIKKAHDQGLEYIVMEVSSHALE 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             R   +++    A+ T +   HL     +E+   AK ++F  L   G    N DDS+ +
Sbjct: 185 LGR--VNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKGIKIFNIDDSYGK 242

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  + H        S+G +K AD Q +       +  +E+ L G   E     +G    
Sbjct: 243 RLWEEFHG------VSYGMNK-ADVQGKILAFEGGREEIELSLFGNKKECKIQILGGFNL 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L +L +V  L    +     L       GR +   C   Q +  +ID  Y     ++
Sbjct: 296 YNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDC--GQDYMVIID--YAHTGDAL 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
           +  +  + +I     G+ I + G   +     +    ++AE  S      V L+  +   
Sbjct: 352 ENILQAVQEIKS---GKIITIFGCGGDRDPRKRPIMAEIAERYS----DFVVLTSDNPRT 404

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +K    +  H+   E  + +   I+ +   GD+V++  K 
Sbjct: 405 ENPESILEEVKSGFTKENHICILERAEAIAEGIRRA-NKGDMVLIAGKG 452


>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 487

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 174/479 (36%), Gaps = 55/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ +    I    +  V+ I+ DSR       F  ++G   DGH +I  A++ G
Sbjct: 1   MQLKELVKDLNIKEINGSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
               +V   +    G   I     DD    L  ++ A      SK  +I ITG+ GKTTT
Sbjct: 61  TKAFLVQKHVDVPEG---ITTIETDDTRFGLAAVSDAFFGHPSSKLNLIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVD---------------VDFGIFE 166
             M+   L +       IG+  N IG   L  +R   +               VD  + E
Sbjct: 118 TYMVKAILEAAGHNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDMIDNKVDSAVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L E+  +       I V T  +  H+     + +EE  +AKA++F+   K     
Sbjct: 178 VSSQGL-ELHRVAK-CDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMCNK---AV 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N D      +   +       + ++G S  +D       + +  ++ ++     S+++ 
Sbjct: 233 INIDSEHGRKMAELAEG----KVLTYGLSSRSDIWASDVIKKTGHTFFKLNSPWGSIDIE 288

Query: 285 HHGIGYHMAQNMLMTLG-IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               G     N L  +G    I    ++   K           G+      +  +  LID
Sbjct: 289 TDLQGEFNIYNALAAIGSCCLIPGITLEHVKKG---LTKVTVPGRMESVKTDGNYSVLID 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P S++  +  + + +    GR +++ G     G+  +     + E+        
Sbjct: 346 --YAHTPDSLEQVLKTVKEFA---HGRVVSLFGC---GGDRDKGKRPAMGEISGNIADFT 397

Query: 404 VWLSG-------FHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           +  S          ++   +A  ++ +  Y +  D      F   +  DGD++++  K 
Sbjct: 398 IITSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKG 456


>gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi N40]
          Length = 508

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 170/480 (35%), Gaps = 65/480 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          + G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKCVKGSL-----DLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLA--VAARLRSKATIIAITGSVGKTTTK 123
           +V + D+        +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDLDFYSSD--VTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNN--------------------HIGVPLTLARMPVDVDFG 163
             + +           I +                        I   L+   +  +  + 
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYA 185

Query: 164 IFELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-G 221
           I E     L  E   L  +    + V T I   HL     I+   + K  +F  +    G
Sbjct: 186 ILESTSHGLDLETARLIDVNYFAV-VFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAG 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N DD +    K       +K  +++  KS  ADF +    + ++ +  E   +G  
Sbjct: 245 FGVINLDDLYSSDFKN-----AVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVK 299

Query: 281 MEVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                  +G    +N++  L  +  IL  D+   +  L+     +GR         Q F 
Sbjct: 300 YLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL--GQNFS 357

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID  Y   P +      +  + + +   R I+V G   E     +     +A++ S  
Sbjct: 358 VIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVEKRFLQGQIADIYS-- 410

Query: 400 NISHVWLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               + L          +  +KD          +  + +            S    GD+V
Sbjct: 411 --DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|270055566|gb|ACZ59059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus]
          Length = 680

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 176/404 (43%), Gaps = 11/404 (2%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG+D +    ++   + ++ T+   S    ++P   V D + A  KLA+  R + K  ++
Sbjct: 63  DGNDLVD---RQNKEIGLIITESYISNLKFTVPQIIVKDSVQAFKKLAIYIRNQYKNPVV 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS+GK++T+ ++T  LS         G+ N    +   + ++  + DF + E  ++ 
Sbjct: 120 AITGSMGKSSTRMLITSLLSDFD-VLENRGNNNVRAAIYNNMLKLIKNPDFAVIETSLNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +  +      ++P IA+IT I  AH S F  +++IA  K  +FEGL   G   +N D  +
Sbjct: 179 INYLENTAVYLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRVFEGLADNGVAIVNNDTLY 238

Query: 232 FELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGI 288
            + L  K+       + ++   K  NAD  +   K       + +  Q K  +    + I
Sbjct: 239 ADYLVDKARE-NTNNVLTYSIKKDSNADLTVDNIKYNKGNIGLLINDQNKETDIYQLNTI 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              M  N L ++  +  L   +      L  F P                 TL+D+++NA
Sbjct: 298 SEGMVSNTLASMLTLKSLKLPIKK--DLLKNFKPFSKILALKEIQTKSHKLTLLDDTHNA 355

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  +M  AI   +  +    G +I  +G + ++G  S   H+ L + L   N  ++    
Sbjct: 356 SLPAMINAIRAFNSQTRFYTGNKIIAIGKISDLGHKSSETHLQLVDELESCNADYILCKD 415

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  + + + R+ ++ +    + L   ++    +  + ++KSS
Sbjct: 416 IELRQVVNKV-RNKNIIWYPNKELLINDLKYLCNENSLTLLKSS 458


>gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 513

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/489 (18%), Positives = 171/489 (34%), Gaps = 74/489 (15%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +  +A QG     +    V G++ DSR +     F AIKG   DG+++I  A+Q+GA  V
Sbjct: 10  ETAKA-QGDEKMNIDGVEVQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGA--V 66

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEML 126
           ++ T+   +   + I +    +    L  L  A       K  +I ITG+ GKTTT  ++
Sbjct: 67  IIYTEHRITALGVMIKI--CSNARKTLADLCNAFYDHPSEKIRVIGITGTNGKTTTSHII 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMS 170
             AL     +   IG+ +  I        +       I+                E+   
Sbjct: 125 YHALKESGVSVGLIGTLDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSH 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L       H ++  IA+ T I   HL+    + +   +K ++F+ L       LN DD+
Sbjct: 185 GLK--SERVHGIKFDIAIHTNIERDHLNYHKNMGDYIRSKKKLFDCLSPGKVALLNLDDN 242

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-----------MEVQLQGK 279
               L   ++ L    + ++G +  A             ++             ++++  
Sbjct: 243 HSLELLTGNNGL---IVVTYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPF 299

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                 + +G H   N L  +    +L    +   K +  F    G  +R      +G+ 
Sbjct: 300 EYPFSINLLGKHNIYNSLAAITCCLLLDLSCEEIAKNIKSFT---GVTRRLEVIYKKGYT 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---- 395
            +  + ++ NPAS  A    +  +         A+ G     G      + D+ ++    
Sbjct: 357 VI--DDFSHNPASYGAVFESMQNLEYKNLHVINAIRGS---RGADINQENADVLKIWYEL 411

Query: 396 -----------------LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
                            L    +  +   G     L +    S++  Y + +      I 
Sbjct: 412 LGMKTLMITSSKDKTGKLDEVQVEEI---GAFFKVLSEG---SVNFEYVDHLSDAIETII 465

Query: 439 SSLVDGDVV 447
             + +GD++
Sbjct: 466 PRIEEGDLL 474


>gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
 gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
          Length = 499

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLA---VAARLRSKATI 110
           GA  V+V+TD     G           + I  F +   + A+             +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD 159
           I ITG+ GKT+T +++   ++S+ +  A +G+  N +   L           TL R   D
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 160 VDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +     +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEV 274
               G   LN DD+       +  ++  + ++ F     + A F  +  K   +     +
Sbjct: 237 -NTLGHGLLNLDDAVGASWLTELKSVPAQ-MWGFSIEGHQAAAFYTKNAKFDDQGVSATL 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  E+    +G     N+L  L  + +   D+    + +    P  GR +R+  A 
Sbjct: 295 VWPEDETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAN 354

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + +
Sbjct: 355 N---ITLVVD-YAHTPDAIEQALNALRR---HCAGDLWCVFGC---GGDRDKGKRPLMGK 404

Query: 395 VLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGD 445
               Y    + ++  +  +      + D +    H   + T       I+  +     GD
Sbjct: 405 AAEQY-ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILLAGKG 471


>gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
 gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
          Length = 501

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 169/468 (36%), Gaps = 53/468 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+   ++  +A+    +    QG    +  DSR +   +AF A  G   DG  ++  A+
Sbjct: 3   TPIQILNNAAEAVA--WLRSRVQGE---LQTDSRKVKAGDAFVAWPGAATDGRAYVGQAL 57

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGK 119
            +GA  V+V  D + +       +  +  +  A  L      A    +  ++A+TG+ GK
Sbjct: 58  AQGAAAVLVEADGLQAFDLSGDRIASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGK 117

Query: 120 TTTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMP--------------VDVD 161
           TTT   L  ALS +    +   A +G+    +   L    M                D  
Sbjct: 118 TTTAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQG 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEK 219
                +  S +G +       +  +A+ T     HL     ++    AKA++F+  GL  
Sbjct: 178 LAACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLP- 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             T  +N DD+    L A+     +  ++S      A  Q +      E     V   G 
Sbjct: 237 --TAVVNIDDAHGARLWARLQGRAM-DVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGH 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+ +    +G +   N+L  L  +  L   ++ A+ A +   P  GR ++      +   
Sbjct: 294 SLRMNTRLVGQYNVSNLLGVLAALRCLGLTLEEAVAACAHLEPVPGRMQQIV----KPGQ 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+   Y   P +++ A+  L   +   +G+   V G   +     +          +  
Sbjct: 350 PLVAVDYAHTPDALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQ----AAQA 405

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           N   V+++  +                SE  + +   I + +  G+ +
Sbjct: 406 NADGVFVTSDNPR--------------SEVPESIIDQILAGMQAGETL 439


>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
 gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 163/480 (33%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  +  DSR +     F  I G   DGH +     +KG
Sbjct: 1   MRLDTLLERLEYKVVQGSAETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEVAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+        + V  V+D   AL  ++ A       K  I+ ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVEVPAD---VTVIKVEDTRYALALMSAAYFGYPAEKLKIVGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             M+   L         IG+    I                +    A M  +    +  +
Sbjct: 118 TYMIKSILEETGHKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEMVKEGCDCVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    K  +F+          
Sbjct: 177 EVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFKQCRLG---IA 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSME 282
           N DD +FE + + +       + +FG S+ AD +    +  S   ++ V          +
Sbjct: 234 NVDDKYFEDVFSGATC----KVETFGFSEKADLRAENVQLVSRPGYLGVAYHVAGVMDFD 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +        +    AL     K     R         FTL+
Sbjct: 290 VEIDIPGTFSVYNSLTAISVCRHFEVPAELIKDALKKAKVKG----RIEMVKVSDDFTLM 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  S+++ ++ L +  P    R + + G     G  S+    ++ EV       
Sbjct: 346 ID-YAHNAMSLESLLTTLKEYHPK---RLVCLFGC---GGNRSRDRRFEMGEVSGRLADL 398

Query: 403 HVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S         A+ D +   I   +  Y E         +  S    GDV+V+  K 
Sbjct: 399 TIITSDNPRFEEPQAIIDDIKTGIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGKG 458


>gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 514

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 151/462 (32%), Gaps = 51/462 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+             + V
Sbjct: 33  LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVRV 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L     A        +I +TG+ GKT+  + +  ALS   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGT 152

Query: 143 Y-----------NNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAV 188
                              + L R  VD+         + +S  G  +      R  IA+
Sbjct: 153 LGTGFVDTLVATGFTTPDAIQLQRSLVDLHRAGARAVAMEVSSHGLEQGRADGTRFDIAL 212

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     + E   AKA +F G        +N DD+    L     A       
Sbjct: 213 FTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGVRLLTGLRA--DIEAV 269

Query: 249 SFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G    A          +    +     +  ++        V    +G     N L  L
Sbjct: 270 EYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRATVHSPMVGLFNVSNQLGVL 329

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++ +       AI  L    P  GR +R+          L+   Y   P +++  +  L
Sbjct: 330 GVLLMAGVSWQDAIARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLCAL 385

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------- 413
           + I+    G+  AV G   +     +     +AE L+     HV L+  +  +       
Sbjct: 386 APITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQ----HVVLTSDNPRSEDPQQIL 441

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + D +         E      L         DVVVV  K 
Sbjct: 442 DMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKG 483


>gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
 gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
          Length = 491

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 151/416 (36%), Gaps = 26/416 (6%)

Query: 4   LWTFHDLLQA---IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +    D++ +   I   ++ +     +  ++ DSR I P   F A+ G  +DG DFI  A
Sbjct: 1   MKKLSDIMASRTEIAVSALALERDPPITALTADSRKIVPGTLFAALPGTRHDGRDFIAQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  V+     V   G   + +    +    L  LA A        I A+TG+ GKT
Sbjct: 61  VAAGASAVLAPKGTVLPPGCEHVALIEDLNPRRRLALLAAAFYGAQPQRIAAVTGTNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVD-VDFGIFELG 168
           +T +      S +      +G+                  P+ L R+  +    G+  L 
Sbjct: 121 STAQFTRQIWSGLGHRSGAMGTLGLVADGFPNIETLTTPDPVELHRLLAELARGGVTHLA 180

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225
           M  S  G  +F    V    A  T +   HL     +E    AKA +FE  + +     L
Sbjct: 181 MEASSHGLDQFRLDGVLVTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVMPQGAVAVL 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D   FE L A   +   +T+  +G+    +  L   +       +E+++ G    +  
Sbjct: 241 NADTPQFEALAALCRSRK-QTVIGYGERGR-ELALHSARPLPHGQQVEIEVFGTRHSLEL 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N L  LG+V     D   A   L+      G   R            +   
Sbjct: 299 PLVGNFQLWNALCALGLVIGSGEDPAAATAQLARLEGVRG---RLDLVARLKNGAAVYVD 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           Y   P  ++   +VL  + PH  GR +AV G   +     +    ++   L+   I
Sbjct: 356 YAHTPDGLE---TVLKALRPHTVGRLVAVFGAGGDRDPGKRPLMGEVVARLADRAI 408


>gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 519

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 144/404 (35%), Gaps = 33/404 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR + P + F A  G   DG   +  A+ +GA   +V  + V +    +  V  + D+
Sbjct: 37  TDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVEREGVEAFRFGAEGVAALRDL 96

Query: 92  LGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------YACIGS 142
             A   LA         +  ++A+TG+ GKT+T   L  AL+ +  +          IG+
Sbjct: 97  KAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWLADALNQLAGSGLAAHGGCGLIGT 156

Query: 143 YNNHIGVPL--TLARMPVDVDFGIFELG------------MSHLGEIRFLTHLVRPHIAV 188
               +   L  T    P  V       G             S +G        +R  +AV
Sbjct: 157 LGVGVPPELECTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEHRLAGMRLRVAV 216

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T     HL   +G+     AK+ +F+         +N DD     L A + A     ++
Sbjct: 217 FTNFTQDHLDYHAGMAAYWQAKSALFDW-PGLQAAVVNIDDPRGGEL-ADTLAQRPIDLW 274

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +   +  A  Q R            V    ++  +    IG++   N+L  +  +  L  
Sbjct: 275 TTSITGPARLQARDITWGEGGLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVVASLRALGI 334

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++ A+ A +   P  GR +      ++    L+   Y   P +++ A+  L  ++    
Sbjct: 335 PLEHALWACAQLAPVPGRMELI----HEPDQPLVAVDYAHTPDALEQALQALRPVAEQRG 390

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           GR   V G     G   ++    +  +        V ++  +  
Sbjct: 391 GRLWCVFGC---GGNRDRAKRPLMGRIAQQR-ADAVIVTSDNPR 430


>gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
 gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
          Length = 535

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 142/347 (40%), Gaps = 21/347 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGM 169
           I ITGS GKT++K +L   LS    +     S+N  +G+ +T+  ++    +  I E+G 
Sbjct: 192 IGITGSYGKTSSKNILQQILSEKFYSLPTPASFNTPMGITITIREQLKPTHEVFICEMGA 251

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            H+G+I  L   V+P I ++T+I P HL+ F   E I + K ++ E L  TG   LN D+
Sbjct: 252 DHVGDIEQLMDFVQPQIGLVTSIGPQHLNTFGSQENIVTEKMKMIEKLPVTGFGVLNKDN 311

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG 287
                   K+       I  +G   ++ D++        + S  ++   +G  +      
Sbjct: 312 ELIRNYYIKNKC----PIAWYGIEQEDVDYRAVNISFGPQGSSFDIHTREGADIPFKTRL 367

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N+L  + +   L    +    A++     E R +  +       +T ID+++N
Sbjct: 368 LGEHNIANILAAVAVGRHLGVSWEQLQSAVAQVRYVEHRLEVKKI----NGYTFIDDAFN 423

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           +NP     ++ VL  +     G R  V   M ++G      +      +       V L 
Sbjct: 424 SNPVGSAMSLQVLKTMP----GTRFIVTPGMIDLGPRQHEINKQFGMKMKDC-ADEVILV 478

Query: 408 GF-HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G      + + L        HVH   T+   F  +       D +++
Sbjct: 479 GKRQTEPIVEGLQACGFDMAHVHIVATVKEAFGLVYQKAAYTDTILL 525


>gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actG]
          Length = 521

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 143/391 (36%), Gaps = 33/391 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL +A+     G        V GI+ DSR++ P + + A+ G  + G DF   A   G
Sbjct: 17  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A   + +      + +  +PV  V D  G +  LA             I ITG+ GKTTT
Sbjct: 77  AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 136

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRF--- 177
             ++   L +   +   IG+    IG     +    P   D       M   G       
Sbjct: 137 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 196

Query: 178 ---------LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        V   +AV   ++P H+   SG+E+   AKA++F    ++    +NYD
Sbjct: 197 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTR-ARSRRGVVNYD 255

Query: 229 DSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVH 285
           D +   L  ++       I +F      +AD++    +     S   V    G       
Sbjct: 256 DEYGRRLITEAEV----PIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPARA 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +  ++    D   A + +       GR +R     ++G   L    
Sbjct: 312 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV----DEGQPYLAVVD 367

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y     ++++ +  L +++   EGR   VLG
Sbjct: 368 YAHKTDAVESVLRSLRRVT---EGRVHVVLG 395


>gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
          Length = 479

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 169/453 (37%), Gaps = 33/453 (7%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P   V G++ DSR + P   F A+ G   DG  +I  A+ +GA  V+   D  A IG
Sbjct: 8   GADPD--VAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTPDSEARIG 65

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+    D    L ++A         T++A+TG+ GKT+  E      +   +  A 
Sbjct: 66  G-RVPLVMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSAS 124

Query: 140 IGSYNNHIGV-----------PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           +G+    +             P+ L  +  D     V     E     L + R     VR
Sbjct: 125 LGTLGLMVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRL--DGVR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHAL 242
              A  T +   HL     ++    AK  +FE  +E  GT  LN D + ++   + +   
Sbjct: 183 IKAAAFTNLTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRR 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + I S+G+   A+ +L       +   +++ + G++  V    +G   A N L  LG+
Sbjct: 243 GHR-ILSYGRRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGL 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D A  ALS      GR +R     N      I   Y   P +++   +VL+ 
Sbjct: 302 AIATGTPDDQATAALSRLAGVRGRMERVAVLANGAA---IYVDYAHTPDALE---TVLNA 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           I PH  G+   V G   +     +      + ++     ++           ++ A   +
Sbjct: 356 IRPHTTGKLWCVFGCGGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAALAA 415

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                             S L  GDV+++  K 
Sbjct: 416 CPGGEEIGDRAEAIRSAVSRLGPGDVLMIAGKG 448


>gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
          Length = 496

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/408 (21%), Positives = 143/408 (35%), Gaps = 33/408 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA--SIGSL 81
              ++G+ +DSR + P +AF A+      G  FI  A  +GA  ++         S+   
Sbjct: 19  DVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +I V G+   LGA+             T++ +TG+ GKT+T ++L  A   +    A  G
Sbjct: 79  AIAVHGLRARLGAMADRF-HGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 137

Query: 142 SYNNHIGVPL----------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRP 184
           +    +                     L ++  D    +  E+    L + R     V  
Sbjct: 138 TLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHALDQGR--VDGVHY 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V T +   HL     +E   +AKA +F          +N DD F   L         
Sbjct: 196 DVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQA-AVINVDDLFGLRLLHGLAKGVR 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +   S     +AD   +      +    ++ +      V    +G     N+L   G++ 
Sbjct: 255 RVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLAVAGVLY 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +      LS   P  GR  R      Q    ++   Y   P ++     VLS +S
Sbjct: 315 ALDYALSEIAAVLSTLRPIHGRMNRL---GGQDGQPMVVVDYAHTPDALG---QVLSSLS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            H  GR I V G   E     +S    +AE     N   V ++  +  
Sbjct: 369 SHVCGRLICVFGCGGERDRGKRSQMAVIAE----SNADVVLVTDDNPR 412


>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
 gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
          Length = 488

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 166/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       +  +  DSR + P   F  I G   DGH ++    ++G
Sbjct: 1   MKLTKLLERLDYKVVAGSDNIEITELVNDSRKVVPGSVFVCISGAVSDGHQYVKDVAERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V  D+    G   + V  V++   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AAAVIVEKDVEVPEG---LTVIKVENTRYALALMSAAYFGYPAEKLKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLAR---MPVDVDFGIFELG 168
             M+   L  +      IG+            NN      T+ +     V+       + 
Sbjct: 118 TYMVKAILEEVGHKVGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQMVEAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  +   I + T +   H+        E+    K  +F+  +       N
Sbjct: 178 VSSQGLMLHRTAGIMFDIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFKQCK---VGIGN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD +FE +   +       I +FG  + AD +    K  S   ++ V          +V
Sbjct: 235 VDDKWFEDVFKDATC----EIETFGFGEKADLRAIDVKHISRPGYLGVWYHVTGLMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +       V+    AL V   K     R         FTL+ 
Sbjct: 291 EIDIPGEFSVYNSLTAIAVCRHFNVPVEKIKDALKVAKVKG----RIEMVKVSDDFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  ++++ +  L   +P   GR + V G     G  S++   ++ EV    +   
Sbjct: 347 D-YAHNAMALESLLHTLRDYNP---GRIVTVFGC---GGNRSKTRRYEMGEVSGKLSDFT 399

Query: 404 VWLSG----FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S         A+ D +    +     Y +         +       GDV+V+  K 
Sbjct: 400 IITSDNPRFEEPQAIIDDIIVGMKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGKG 458


>gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
          Length = 522

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 149/389 (38%), Gaps = 34/389 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G    G V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 17  LGELADRLGVETAG---SGDVTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAV 73

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV   ++    + +LA     R       I ITG+ GKTTT  
Sbjct: 74  AVLTDPTGAERAAATGLPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAY 133

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L +  +    IG+    IG     +    P   D       M   G     +   
Sbjct: 134 LVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 193

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           +AV   ++P H+   SG+E+   AKA++F   E++    +N+DD 
Sbjct: 194 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTP-ERSHRGVVNFDDE 252

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
           +   L  +S       + +F      +AD+     +   + S    V  +G+ +      
Sbjct: 253 YGRRLITESGV----PVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 308

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  +++       A   ++      GR +R     + G   L    Y 
Sbjct: 309 PGPFNVANTLAAIVTLAVAGVAPQIAADGVAAVPGVPGRLERV----DAGQPYLAVVDYA 364

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
               ++++ +  L +++   EG+   VLG
Sbjct: 365 HKTDAVESVLRSLRKVT---EGKVHIVLG 390


>gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
          Length = 502

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 155/483 (32%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
                LL +     +          + G+  DSR   P + F  + G   DG  F   A+
Sbjct: 6   MNLRSLLASTPTQVLQPQHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAI 65

Query: 62  QKGAGL------VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
             GA         +    + A+  +  I    +    GA+       +      +I +TG
Sbjct: 66  AAGAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAF-YNQPAQTLKLIGVTG 124

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VD 159
           + GKTTT  ++   L++     A +G+  N       +A+                    
Sbjct: 125 TNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATAVDAG 184

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E+    L + R   +     +AV T +   HL     +E   +AKA +F     
Sbjct: 185 CQAAVMEVSSHALDQGR--VNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPPYL 242

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N DD++ + L   +         ++     ADF     +         ++    
Sbjct: 243 RGKAVINADDAYGQRLITMTPP---GQCLTYSVVGTADFCTTDLQYGPTGVEGTIKTPDG 299

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +       +G     N+L  +     L   ++T +  +  F    GR +R    + Q   
Sbjct: 300 AFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERV---VGQDSD 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +   Y   P S++   ++L    P  +G  I V G   +     +    ++A  L+  
Sbjct: 357 PTVIVDYAHTPDSLE---NLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLA-- 411

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +            +   +P +  V               S   GD V++ 
Sbjct: 412 --DRVIITSDNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
 gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
          Length = 480

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/455 (21%), Positives = 165/455 (36%), Gaps = 45/455 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             +  V G+++DSR++ P + FFA+ G   DG  FI  A++ GA  VV +        S+
Sbjct: 17  TSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAGAVAVVADHAH-----SV 71

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           S+PV    +   AL   A A   R   TI A+TG+ GKT+          S+    A +G
Sbjct: 72  SVPVIVTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAAFTRQLWDSLGYDAASLG 131

Query: 142 SYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185
           +                  P+ L R   +     V     E     L + R     VR  
Sbjct: 132 TIGIVSRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEASSHGLDQHRL--DGVRIA 189

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGI 244
            A  T ++  H+     +E   +AK  +F  L   G    +  D      + A + A  +
Sbjct: 190 AAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADHEHSAAVIAAARARKL 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + + G+      +L           M +Q +G++  +    +G    +N L+  G+V 
Sbjct: 250 -DVITIGRKGEG-IRLVDATIDGFGQKMTIQHRGQTHRLRLPLVGEFQIENALVAAGLVI 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D      AL      +GR +       +G    +D  Y   P ++  A+  L    
Sbjct: 308 ATGGDATKTFSALEQLEGAKGRLEL--IGDCRGAPVFVD--YAHKPDALMKALEALR--- 360

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDAL 418
           P+ +GR + V G     G+        +  +   Y    V ++  +  +        + L
Sbjct: 361 PYAKGRLVVVFGA---GGDRDAGKRPLMGAIAMRY-ADAVIVTDDNPRSERPATIRAEIL 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                 +SL  GDV+++  K 
Sbjct: 417 AAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKG 451


>gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 514

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 151/464 (32%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVRI 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L     A         I +TG+ GKT+  + +  ALS   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSCSQWIAQALSRQGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       +  E+    L + R      R  I
Sbjct: 153 LGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGR--ADGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     + E   AKA +F G        +N DD+    L     A     
Sbjct: 211 ALFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGVRLLTGLRA--DIE 267

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +G    A          +    +     +  +V        V    +G     N L 
Sbjct: 268 AVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG++ +       AI  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    G+  AV G   +     +     +AE L+     HV L+  +  +     
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQ----HVVLTSDNPRSEDPQQ 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DVVVV  K 
Sbjct: 440 ILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKG 483


>gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 497

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 170/452 (37%), Gaps = 42/452 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  IS +S ++     F   KG  +D H        +G  + +V  + +    +  +
Sbjct: 25  DKDIEHISNNSNNLKENTLFICRKGSKFDSHTIAERLYNEGMVIALVTEEEI----NTKL 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D   A   LA          +I   +TG+ GKTT   +    +       +  G
Sbjct: 81  PHVQVYDSRLAEAYLAAEFYSHPYQHLITFGVTGTNGKTTCAHLFHHIMQQFGLNGSLSG 140

Query: 142 SYNNHIGVPL------------TLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPH 185
           +  N I                 +  M      G      E+    L + R     +R  
Sbjct: 141 TVLNDILGDKFYVHNTTPDAITIMDNMSKTHKNGGSYYSMEVSSHSLDQGR--VETIRFD 198

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA +T I   HL      E   ++K  +F+ L+K G   +N  + + +LL  K     + 
Sbjct: 199 IAGLTNITRDHLDYHPTFEHYVNSKLHLFDLLKKDGIAVIN--EEYVQLLNGK----KVP 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG ++NA +++         +   ++    + +V    IG + A N+ + L  +  
Sbjct: 253 NLVTFGVNENAQYKISDITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLAGLVE 312

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  ++D  I  +S F   +GR +    A   G   +ID  +  +P +++  IS   +++ 
Sbjct: 313 IGYEIDEVISYISSFRGVDGRFEPIPEARRLGIEVVID--FAHSPDALEKVISSARKLA- 369

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
             +GR I V G   +  +  +    ++   +  +  ++     G +   + + + + +  
Sbjct: 370 --KGRVIVVYGAGGQADKGKRPMMAEVVTRLADIAILTTDDPRGENPEEIINEVEKGVRP 427

Query: 424 ----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               +   +  + +   I +    GDVV++  
Sbjct: 428 NSLSLTVLDRKEAIDTAI-TLANRGDVVLITG 458


>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
 gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
          Length = 485

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 180/479 (37%), Gaps = 59/479 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +     G  P   V GI+ DSR + P   FFA++G   +G+ F   A++KG
Sbjct: 1   MKLPHLLKGVP-LLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKG 59

Query: 65  AGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           A  VV +       + +   PV  V++   AL   A       + +  I+ +TG+ GKTT
Sbjct: 60  ASAVVTDSRKWFEKLSAAGKPVLLVENSRKALATAAANLYGNPQKELKILGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVD-----VDFGIF 165
           T  +L  AL+ +      IG+            +      + L +M  +      +F + 
Sbjct: 120 TTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVVC 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R   H +    A+ T + P HL     +EE   AKA++F     +    +
Sbjct: 180 EVSSHGLHQHR--VHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLF---RLSKLSVV 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +   L A     G KT+ ++GK           +    +  + +     +++V H
Sbjct: 235 NRDDPYGTTLSALRAVNGGKTV-TYGKKSRN----YTIEAIDPEGSVLIGTPKGAVKVKH 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N+     ++S L  +    +     F   +  G+             +   
Sbjct: 290 NLKGEFNGYNVTAAFSLLSELGFEP---LNLKEAFKNVKVPGRMEEVVPG------VFVD 340

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++ A++ L +      GR I V G     G+  ++    + ++ +    S + 
Sbjct: 341 YAHTPDALQKALNALKKA---CSGRLIVVFGC---GGDRDRTKRPVMGKIAATLADSVIV 394

Query: 406 LSG--------FHVLALKDALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVVV--KS 451
            S              +   +P  +    +  +D    + L ++      D +++  K 
Sbjct: 395 TSDNPRSEPPEQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQA-DYLLIAGKG 452


>gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
 gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
          Length = 490

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 176/479 (36%), Gaps = 51/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   LL  +            ++G+ +DSR++AP + F A+ G   DG  FI  AV  
Sbjct: 1   MMTLQQLLPDV--TLPASAAGVVLSGLQLDSRNVAPGDLFLAVPGVASDGRQFISQAVAA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  V+ + +        ++P   + ++   +  LA            ++ +TG+ GKT+
Sbjct: 59  GAVAVLADAETFEIQQDQAVPCVALPELGRRVGTLAARWYGEPGAAMNVVGVTGTNGKTS 118

Query: 122 TKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARM-PVDVDFGIF 165
               L  AL+++    A +G+                 + I +   LAR+     D    
Sbjct: 119 ITWFLRDALNALGHRCALVGTLGLGLKGDEQTTGHTTPDPITLQAGLARVRDAGADCVAM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--I 223
           E+    L + R  +  V   +AV + ++  HL     +E   +AK+ +F    + G    
Sbjct: 179 EVSSHALDQHRLGSTPVP--VAVFSNLSRDHLDYHGDMEAYLAAKSVLF---TRDGVKLA 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD     L     A G++ + +FG    A  +       ++    E+ + G  + V
Sbjct: 234 VINCDDPAAYSLIG-CLADGVRCV-TFGDQPGATVRCAAVTFTADGMRAELTVGGDPLTV 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N++   GI+        +   AL+      GR +  +     G  T+I 
Sbjct: 292 TLPLFGRFNLSNVMAVAGILHGQGISTASLGGALAAVTAVPGRMEPVQ---QPGCPTVIV 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P  ++ A+        H  GR   ++G   +     +     +AE         
Sbjct: 349 D-YAHTPDGLEKALQACRA---HFHGRLFCIVGCGGDRDTGKRPQMAAVAE----RGADR 400

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+  +  +         ++  L  +  V          +    +  DGDV+++  K 
Sbjct: 401 VVLTSDNPRSEDPQQIIDDMRAGLADAASVQAIVERAQAVMDTVQAASDGDVILLAGKG 459


>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 495

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 159/470 (33%), Gaps = 50/470 (10%)

Query: 12  QAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           Q + G  +   P      +  IS D+R++ P   F A+ G   DG  +I  A+ KGA  V
Sbjct: 5   QLLAGVPLTGEPYSQDMEITSISYDTRTLLPGALFVALPGAKTDGSLYIDEALAKGAAAV 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEML 126
           V            + P     D   AL  LA         + T+I +TG+ GKTTT  ++
Sbjct: 65  VCRRRPQREGVFFTTP-----DPRRALALLAENWFGHPGREMTLIGVTGTNGKTTTTFLI 119

Query: 127 TIALSSIKKTY----ACIGSYNNHIGVPLT-----------LARMPVDVDFGIFELGMSH 171
              L    KT       I +      +P             L R   D       + +S 
Sbjct: 120 KEMLEGALKTQVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLREMADSGCTHVVMEVSS 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              ++     +   +A  T +   HL     +EE  SAK  +F    +     LN DD  
Sbjct: 180 HALVQHRVEGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLFHQCRR---AVLNLDDEA 236

Query: 232 FELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               + +        ++++ ++K+ AD   +  +    Q   E   + +   V     G 
Sbjct: 237 GRWYRERLAC----PVFTYSENKDQADLTAKGIRLYPGQVEFEAVAREQIQRVFLPIPGG 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L  L +   L   +     AL      +GR +         +  LID  Y  +P
Sbjct: 293 FTIYNALCALSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPT--AYTVLID--YAHSP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLS 407
            +++  +      +    GR I + G   +     +    D+ + L+   +    +    
Sbjct: 349 NALENILLTARDFTA---GRLICLFGCGGDRDRTKRPIMGDVVKELADLAVVTSDNPRTE 405

Query: 408 GFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 ++D L         +H          +  S    GDV+V+  K 
Sbjct: 406 DPE-DIIRDILAGMEGEGAQIHVEPDRRQAIAWALSQGRPGDVIVLAGKG 454


>gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
 gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
          Length = 494

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 152/431 (35%), Gaps = 42/431 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + + + LLQ      +  V    ++G+  DSR +   +AF A+ G H     +I  A++ 
Sbjct: 3   ITSLNTLLQ--GVVVVPSVFDVTIHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRA 60

Query: 64  GAGLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA ++++ ++         G+L +PV  +   LG L           +  ++ +TG+ GK
Sbjct: 61  GASVILLESEQAGECSERSGALIVPVPELKVRLGKLADRFFEY-PSQRLQLVGVTGTNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFG 163
           T+  + +   L +       +G+    +   L  A                         
Sbjct: 120 TSVTQYIAQLLQAAGTPCGVLGTLGYGMPETLQPATHTTPDVVQANRVLAGILASGGRAA 179

Query: 164 IFELGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E+    L  G I  LT       AV T +   HL     +     AKA++F   E+  
Sbjct: 180 AMEVSSHALDQGRIDRLTL----TAAVFTNLTRDHLDYHGSMAAYGEAKAKLFSR-EELR 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N DD F   L  +      +  +S      A+  L+++          +  +    
Sbjct: 235 FVVINVDDPFGRKLYHQLEGKCDRLRFSL-HEPQAELWLKEFCALDNGFRAVLDGRWGEF 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G   A N+L  +  V  L  DV      +    P  GR + +      G    
Sbjct: 294 TIEAPLMGRFNASNVLAAVATVMALGVDVTQVQHGVRRLVPPAGRLQVF----TAGDGAR 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P ++  A++ L    PH  GR I V G     G+       ++A+       
Sbjct: 350 AVVDYAHTPDALNNALAALR---PHVSGRLICVFGC---GGDRDSGKRPEMAQQA-ENGA 402

Query: 402 SHVWLSGFHVL 412
             V ++  +  
Sbjct: 403 DLVIVTDDNPR 413


>gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
 gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
          Length = 497

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 155/483 (32%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
                LL +     +          + G+  DSR   P + F  + G   DG  F   A+
Sbjct: 1   MNLRSLLASTPTQVLQPQHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAI 60

Query: 62  QKGAGL------VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
             GA         +    + A+  +  I    +    GA+       +      +I +TG
Sbjct: 61  AAGAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAF-YNQPAQTLKLIGVTG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VD 159
           + GKTTT  ++   L++     A +G+  N       +A+                    
Sbjct: 120 TNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATAVDAG 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E+    L + R   +     +AV T +   HL     +E   +AKA +F     
Sbjct: 180 CQAAVMEVSSHALDQGR--VNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPPYL 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N DD++ + L   +         ++     ADF     +         ++    
Sbjct: 238 RGKAVINADDAYGQRLITMTPP---GQCLTYSVVGTADFCTTDLQYGPTGVEGTIKTPDG 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +       +G     N+L  +     L   ++T +  +  F    GR +R    + Q   
Sbjct: 295 AFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERV---VGQDSD 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +   Y   P S++   ++L    P  +G  I V G   +     +    ++A  L+  
Sbjct: 352 PTVIVDYAHTPDSLE---NLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLA-- 406

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +            +   +P +  V               S   GD V++ 
Sbjct: 407 --DRVIITSDNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLA 464

Query: 450 -KS 451
            K 
Sbjct: 465 GKG 467


>gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 477

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 179/475 (37%), Gaps = 55/475 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  F ++L+ I   S     +  +  ++ +S+ +    AF AIKG   DGH +I  A++ 
Sbjct: 1   MLKFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
           GA L++   D+    G   I    V+D   AL ++   ++     K TI+++TGS GKTT
Sbjct: 61  GASLIIHTEDIAYKEG---ISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFEL 167
           T  ++   L  I    A IG              +    I     L  + +D +     L
Sbjct: 118 TSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLSL 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +   + +     V T ++  HL     ++    AK  +F+  + T     N 
Sbjct: 178 ESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQAKHT---VANI 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD + +  K            ++G  ++NAD++     +   +   EV    K +E + +
Sbjct: 235 DDPYGKKAKEL-----YPNTITYGINNENADYRAENVVKKDGKVSYEV----KGVEFILN 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I  +   N L    +V  + A ++    A+  F+    R +      N G   +ID  +
Sbjct: 286 TIADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFEYME--NNLGLNIIID--F 341

Query: 347 NANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              P + +     + Q      G +I AV G     G+ ++ F +   +  +  ++  V 
Sbjct: 342 AHTPFAYECLFKSVPQ------GHKIYAVYG---INGDRNKEFRVSTGKACADNDVFSVV 392

Query: 406 LSGFHVLALKDALP-------RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKS 451
            +        + +        +S    Y      +    +  +    GD + +  
Sbjct: 393 TTDDPKFDTVENISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLG 447


>gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 146/463 (31%), Gaps = 53/463 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G    H DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRI 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L              +I +TG+ GKT+  + +  AL+   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       I  E+    L + R         I
Sbjct: 153 LGTGFVDALAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGR--VDGTCFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + E   AKA +F G        +N DD+    L   + A     
Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGVRLLQNARA--DIE 267

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +G    A          +    +     +  +V        V    +G     N+L 
Sbjct: 268 TIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLA 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG +         AI  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGALLTAGVPWPDAIAHLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            L+ I+    G+  AV G     G+        +  +        V  S          +
Sbjct: 384 ALAPITEARGGKLWAVFGC---GGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHI 440

Query: 415 KDALPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            D +   +H        E      L         DV+VV  K 
Sbjct: 441 LDEIADGMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483


>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
 gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
          Length = 515

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/484 (21%), Positives = 177/484 (36%), Gaps = 51/484 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL    +LL A Q    G+  +  V GI+ DSR + P + + A+ G    G +F   A 
Sbjct: 10  RPLLGLVELLSA-QADGPGLA-KVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAA 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGK 119
             GA  +  +        +  +PV   DDV   L      V        ++I +TG+ GK
Sbjct: 68  AAGAVAIWTDPAGRHRAAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGK 127

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  +L   L +     A IG+    IG     + +                 V V   
Sbjct: 128 TTTVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAA 187

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L + R         +AV T ++  HL   + + +  +AKA++F     +   
Sbjct: 188 AMEVSSHALAQGR--VGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTP-AYSRVG 244

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SME 282
            +N DD +   L   +      T +S     +AD++    +  ++ S   +   G    +
Sbjct: 245 VVNVDDGYGRELTRIAQVP--LTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEAD 302

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  +  +      +  A   +       GR +       Q F  L+
Sbjct: 303 VSIQLPGPFNVANALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEP--IDEGQDFTALV 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAE 394
           D  Y+  P +++A ++ L +++    GR I VLG   +        MGE +     D+A 
Sbjct: 361 D--YSHKPGAVEAVLTSLREVTA---GRLIVVLGCGGDRDRGKRPLMGETAARL-ADVAV 414

Query: 395 VLSLYNISHVWLSGFHVLALKDA---LPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           +      S   L+   + A+ +    +P++   H                    GDVVV+
Sbjct: 415 LTDDNPRSEDPLA--ILAAMVEGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVI 472

Query: 450 --KS 451
             K 
Sbjct: 473 AGKG 476


>gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 292

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 10/297 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +  + IQG ++    +     +S DSR++ P + F A+KG  +D HDF+     +
Sbjct: 3   MLSLGEAARLIQGATVHGDARVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLADVAAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+     +   L++P     +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 63  GAAAALVS----HTPAGLAMPTIEGGETRAALGALAHGWRKRFPLPVVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   L  
Sbjct: 119 EMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLNAAHRLAVIELGMNHPGETEILAR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P +A++      H    + +E +A   A +   L   G      DD++  + +  + 
Sbjct: 179 LTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAYAGIWRVAAT 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 I  F           +     +   + +     S+ V    +G H A+N L
Sbjct: 239 G---NRIVDFALDDGERHTDAQVTGRVDGGALAIDTPAGSITVRLRALGAHNARNAL 292


>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           [Rhizobium etli CIAT 652]
 gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CIAT 652]
          Length = 506

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/468 (19%), Positives = 170/468 (36%), Gaps = 44/468 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL   ++    G      ++G+S DSR++AP  AF A+ G   DG  FI  A  +GA + 
Sbjct: 29  DLFPELEAQLEGPAGLLDISGLSSDSRNVAPGNAFVAVAGTKADGAGFIADAAGRGAAVA 88

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +  +       SIPV  V +    L+  A     R   T++A+TG+ GKT+       
Sbjct: 89  IASQPV-----DASIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQ 143

Query: 129 ALSSIKKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHL 172
             +      A IG+                  P++L ++  +     V     E     L
Sbjct: 144 IWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGL 203

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSF 231
            + R     V+   A  T +   H+     +E   +AK  +F+ L   G    +  DD +
Sbjct: 204 DQSRL--DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPW 261

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                 K+       + + G+  +    L++ +    +   E+ +  +  EV     G  
Sbjct: 262 SRQ-AVKAAVDAGLDVRTVGRKGD-YLTLKRVEHFRHKQMAEIHIGDEIFEVDIPLAGDF 319

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L+  G+          A+ AL       G   R     +     L    Y   P 
Sbjct: 320 QVANALVAAGLAMSTGVVPKVAMAALEKLVGASG---RLELVGHTKDGALAYVDYAHKPD 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++   +VL+ + P   GR + V G     G+  +     + E+        V ++  + 
Sbjct: 377 ALE---NVLNSVRPFTTGRVVVVFGC---GGDRDRGKRPIMGEIACRL-ADVVIVTDDNP 429

Query: 412 LALKDALPRSIHVHYSETMDGL---FLFIQSS---LVDGDVVVV--KS 451
            + + A  R+  +  +     +      I+ +   L  GD ++V  K 
Sbjct: 430 RSEEPAAIRAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 477


>gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
 gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
          Length = 494

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/484 (20%), Positives = 174/484 (35%), Gaps = 51/484 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T   LL   Q  S        V  + +DSR +     F A+KG   DG  FI  A
Sbjct: 1   MSKELTLAALLSPWQNISADKSANIAVQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASA 60

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           ++ GA  V+  +      G++    +IPV  +  +   L+ LA       +  II +TG+
Sbjct: 61  IELGANAVIAESCEQHLAGTIEYIDTIPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVD-V 160
            GKTT  +++   L  I K  A +G+  N                I +  TL ++     
Sbjct: 121 NGKTTITQLIAQWLELIGKKAAVMGTTGNGFLDDLQPAANTTGNAIEIQQTLHQLEQQSA 180

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            F   E+    L + R     +   + V + ++  HL     +EE A AK  +F      
Sbjct: 181 QFTALEVSSHGLVQGR--VKALDFAVGVFSNLSRDHLDYHGTMEEYAEAKFSLFSE-HNC 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD        +       ++      +      +          + +     +
Sbjct: 238 HNAVINIDDQVGSRWVERLDNAIAVSLKPTAIERA--VWAKSVAYSESGISLSIDGMFGA 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            + V   IG   A N+L+ +  +  L  D    ++  S   P  GR + +          
Sbjct: 296 GDCVVPLIGEFNASNVLLAMTTLLALGIDKQLLLETASSLKPVLGRMELFTAENKAKVVV 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y   P +++ A++ L     H +G+  A+ G   +     +     + E L+   
Sbjct: 356 ----DYAHTPDALEKALNALR---VHCQGQLWAIFGCGGDRDTGKRPMMAAIGERLA--- 405

Query: 401 ISHVWLSGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V L+  +  +      +KD L     P +  V +S   D L   + +S    D++++
Sbjct: 406 -DRVILTDDNPRSESPAEIVKDMLVGMNQPDTAVVEHSR-FDALQFALANS-HADDIILL 462

Query: 450 --KS 451
             K 
Sbjct: 463 AGKG 466


>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
 gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
          Length = 505

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/493 (18%), Positives = 176/493 (35%), Gaps = 70/493 (14%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + +  +   +    +  + GI  DSR I     F A+ G   DGH+FI +AV  GA +++
Sbjct: 4   IFKDTEYKVLKDGKKFEIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMII 63

Query: 70  VNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125
                D+     +  I    V+D+   L  +A       ++K  I+ ITG+ GKTT+  +
Sbjct: 64  CEKEVDVKQYTNTTEITFVLVEDIRKKLGIIASNYYDYPQNKIKIVGITGTNGKTTSSFI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVD--------------VDFGIFELGM 169
           L   L       A IG+  N I      T+   P                 D+ I E+  
Sbjct: 124 LENILE----KTARIGTTGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVS- 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLN 226
           SH  EI     +++   A+ T +   HL     +E   +AK ++F  L      G   +N
Sbjct: 179 SHALEI-GRVDMLQFDSAIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVIN 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------- 277
            DD +   + ++       +I    +++NAD         +    +++ L+         
Sbjct: 238 IDDEYGAKIYSEKKDNNYISISV--RNENADIWGDILNYTNNGMKIKINLENYLEKNKHN 295

Query: 278 ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +   + IG +   N+L  +     L  ++   ++ L       G   R+   
Sbjct: 296 LKNSDGEYKFEINLIGEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPG---RFETI 352

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N+    ++ + +      +      L QI+   + R I + G     G+        +A
Sbjct: 353 KNELEARIVVD-FAHTDDGLLNIGKTLKQIT---DKRVITIFGA---GGDRDHEKRPKMA 405

Query: 394 EVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHY-------SETMDGLFLFIQSS 440
           +  + ++  ++ L+  +         L D     I   Y           +    +    
Sbjct: 406 KAAAKFS-DYIILTSDNPRTENPVNILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKM 464

Query: 441 LVDGDVVVV--KS 451
           L   D +++  K 
Sbjct: 465 LEKDDSLLIAGKG 477


>gi|225077394|ref|ZP_03720593.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
 gi|224951278|gb|EEG32487.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
          Length = 469

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 157/436 (36%), Gaps = 50/436 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  +    L +           +    +   L     +   G  E  
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAG--------LDPTFVIGGKLNAAGTNARLGKGEYI 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           ++   E       + P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 159 VAEADESDASFLYLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSME 282
           D      +  K      K   ++G    AD      +    Q    V +Q      +  E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           VV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A +S      P     +  VL         ++    D  +VL+  + 
Sbjct: 335 LVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTVDA 390

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVK 450
              + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+  
Sbjct: 391 LVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM 450

Query: 451 SSNSCGFYRLINLLLE 466
            + S    R+ + L+E
Sbjct: 451 GAGSIN--RVPSALVE 464


>gi|325128839|gb|EGC51698.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           N1568]
          Length = 469

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++VIT I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVITNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 449 NMGAGSIN--RVPAALLE 464


>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
 gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
          Length = 487

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/481 (20%), Positives = 166/481 (34%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    Q  V  +  DSR +     F  I G   DGH ++    +KG
Sbjct: 1   MKLTQLLERLEYEVVQGDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAYVQQVAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V  D+ A  G   + V  V++   AL   + A       K  +I ITG+ GKTTT
Sbjct: 61  AAAVIVEKDVEAPEG---LTVIKVENTRYALALTSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L  +      IG+    IG     A                 +    +  + E
Sbjct: 118 TYMVKSILEEVGIKVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEMVEEGCECVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   R  T  +   I + T +   H+         E    K+ +F+  +      
Sbjct: 178 VSSQGLKLDR--TAGIPFEIGIFTNLGEDHIGPNEHKDFNEYKYCKSLLFKQCK---IGI 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSM 281
            N DD +FE +   +       + +FG S+ AD +    K  S   ++ VQ         
Sbjct: 233 GNVDDKWFEDIFKDATC----KVETFGFSEKADIRATDVKHISRPGYLGVQYHVAGLMDF 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N L  + +       V+   KAL V   K     R         FTL
Sbjct: 289 DVEIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKALKVARVKG----RIEMIKVSDDFTL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  N  ++++ +  L    P    R + V G     G  S++   ++ EV    + 
Sbjct: 345 MID-YAHNAMALESLLDTLRDYHPE---RIVTVFGC---GGNRSKTRRYEMGEVSGKLSD 397

Query: 402 SHVWLSG----FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450
             +  S         A+ D +    +     Y           +       GDV+++  K
Sbjct: 398 FTIITSDNPRFEEPQAIIDDIVVGMKKTDGKYITICDRKEAIKYAIEHGQPGDVIILAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
 gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
          Length = 493

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 172/482 (35%), Gaps = 51/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL            +     +++DSR+I   + F A+ G   DG  FI  A+ +
Sbjct: 1   MMLLRDLL----APWFPYAGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-------ARLRSKATIIAITGS 116
           GA  V+V+TD +   G +     GV      L +   A               I+ ITG+
Sbjct: 57  GATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI 164
            GKT+T ++    ++ ++   A +G+  N +   L             + ++    D G+
Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFADKGV 176

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V   +AV T +   HL     +E  A AK  +F        
Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHG 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKS 280
           +  N DD       ++   +  K ++ F    + +  F  +  +   +     +      
Sbjct: 237 LV-NLDDPVGAAWLSELANVPAK-MWGFSIEAHTEVAFYTKNAQFNDQGVQATLVWPEGE 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    +G     N+L  L  + +   D+      +    P  GR +R+  A N    T
Sbjct: 295 VDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADN---IT 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+ + Y   P +++ A++ L +   H  G    V G   +  +  +      AE  +   
Sbjct: 352 LVVD-YAHTPDAIEQALNALRR---HCAGELWCVFGCGGDRDKGKRPLMGQAAEQCA--- 404

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              + ++  +  +         +   L                  + +    GDV+++  
Sbjct: 405 -DRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAG 463

Query: 450 KS 451
           K 
Sbjct: 464 KG 465


>gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 495

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 156/465 (33%), Gaps = 47/465 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV--VNTDMV 75
            + +     V+G+ +DSR + P +AF AI G    G  F   A Q GA  ++        
Sbjct: 13  DVALPRDIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAE 72

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               + +I V G+   LGA+  L          T++ +TG+ GKT+T ++L  A      
Sbjct: 73  YPAPADAIAVPGLRSRLGAMADLF-HGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGL 131

Query: 136 TYACIGSYNNHIGV---------PLTLARM-------PVDVDFGIFELGMSHLGEIRFLT 179
               IG+    +           PL L+             +    E+    L + R   
Sbjct: 132 RGGSIGTLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGR--V 189

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA 237
             V   +AV T +   HL     +     AKA +F  EGL       LN DD F  +L  
Sbjct: 190 DGVHYDVAVFTNLTRDHLDYHGDMASYGEAKARLFLREGLRS---AVLNLDDEFGRVLAG 246

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +          S    + A  Q R  +  +     E+    +S  V    +G     N+L
Sbjct: 247 RLAEGVRLVGVSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLL 306

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G++  L   V      LS   P  GR  R       G   L+   Y   P +++   
Sbjct: 307 AVGGVLHALGDSVACVAAILSRLQPVAGRMNRL---GGDGERPLVVVDYAHTPDALE--- 360

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412
             L+ +  H   R   V G   E     +     +AE     +   V ++     G    
Sbjct: 361 QALASLRAHAGARLTCVFGCGGERDRGKRPMMARIAE----QHADRVVVTDDNPRGEDGD 416

Query: 413 ALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+   +         V              +     DVV+V  K 
Sbjct: 417 AIVAGIMAGFAAPEAVQVERDRALAIARAIARSGAQDVVLVAGKG 461


>gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 452

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 153/398 (38%), Gaps = 34/398 (8%)

Query: 11  LQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L  + G      P+    V GI+ DSR++ P + + A+ G    G DF+  A   GA  V
Sbjct: 17  LAELSGQLGVAAPEQTAEVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAV 76

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEML 126
           + +      + +  +P   VDD    + +LA             I ITG+ GKTTT  ++
Sbjct: 77  LTDPAGAERVAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLV 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFLTH 180
              L ++  +   IG+    IG     +    P   D       M   G     +   +H
Sbjct: 137 EGGLRTV-HSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSH 195

Query: 181 LV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +           I V T ++P H+   S +E+   AKA++F   E+     +N DD + 
Sbjct: 196 ALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLFTP-ERGRLGVVNADDEYG 254

Query: 233 ELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIG 289
             L  ++       + ++      +AD++    +  +  S   V   +G+ +       G
Sbjct: 255 RRLAKEAGV----PVVTYSAEGHPDADWRAEDVEVGTMDSTFTVVGPKGERIAARSPLPG 310

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  +  +++   D   A   ++      GR +R     + G   L    Y   
Sbjct: 311 PFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERV----DAGQPYLAVVDYAHK 366

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             ++++ +  L +++   EGR   VLG   +  +  ++
Sbjct: 367 TDAVESVLRALRKVT---EGRVHVVLGCGGDRDKTKRA 401


>gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 502

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 173/481 (35%), Gaps = 47/481 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F   L  +   +    P   + G+  DSR + P   F A++G   DG+ +I  A++KG
Sbjct: 1   MQFSQALAGVDTTARSG-PDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKG 59

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKT 120
           AG ++ ++    +  SL   + +  V     A+             +  +  +TG+ GKT
Sbjct: 60  AGAILTDSAEAMATWSLRTDVAIAQVPHGRQAMALVAANFFGHPERQLAVSGVTGTNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVD--VDFGI 164
           TT  +L   L   ++  A +G+   H+                 L L R  VD  V   +
Sbjct: 120 TTTFLLESLLQHAQRKTALVGTIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAV 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGT 222
            E+    L + R   + +   +A+ T +   HL     +++  +AK  +F+    +    
Sbjct: 180 MEVSSHALAQGR--VYGIPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRV 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN +D     L   +   G + IYS+G +   +F+    +                  
Sbjct: 238 SVLNLEDPHGAELALTAREHGSE-IYSYGFNTG-EFRAEDVQLSGGGMRFHWHTPFGHAP 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N+L             D  +++++  H   G   R++       FT++
Sbjct: 296 VTTRLIGRVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPG---RFQTIDEGQPFTVV 352

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y     +++  I++   +    +GR I + G     G+  ++    + +  +     
Sbjct: 353 VD-YAHTDDALRNLIALARDLVHKHKGRVITLFGC---GGDRDRTKRPLMGQAAAE-GSD 407

Query: 403 HVWLSGFHVLA------LKDALPRSI--HVHY--SETMDGLFLFIQSSLVDGDVVVV--K 450
            V L+  +  +      L D LP        Y                   GD+V++  K
Sbjct: 408 VVVLTSDNPRSEDPEAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|218768809|ref|YP_002343321.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           Z2491]
 gi|325203530|gb|ADY98983.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240355]
          Length = 468

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 60  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 108 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 161 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 216 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 272 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P     +  VL         ++    D  +VL+  
Sbjct: 332 ALLVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 387

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 388 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 448 NMGAGSIN--RVPAALLE 463


>gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate
           ligase protein [Xanthomonas albilineans]
          Length = 494

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 137/398 (34%), Gaps = 24/398 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +  +  V+G+++DSR++ P +AF AI G    G  F+  A   GA  ++       +
Sbjct: 13  DVALPREVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAIL-FEPPAPA 71

Query: 78  IGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S     V  +   +  +   +        T++ +TG+ GKT+  ++LT A   +  
Sbjct: 72  DLPASADAIAVPGLRARMGAMADQLHGHPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGT 131

Query: 136 TYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               IG+    +   +               L     D       + +S     +     
Sbjct: 132 CSGSIGTLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   +AV T +   HL     +    +AKA +F  +       +N DD+F   L      
Sbjct: 192 VHFDVAVFTNLTRDHLDYHRDMAAYGAAKARLFA-MPGLRAAVVNLDDTFGRQLLHALDP 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +   S      A  +       +     ++ +  +   +    +G     N+L   G
Sbjct: 251 ALRRIGVSSRGRDGATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFNVDNLLAVAG 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L          L+   P  GR  R      +    L+   Y   P +++ A+  L 
Sbjct: 311 ALYALDVPPVRIAATLAQLQPIRGRMNRL---GGRDAQPLVVVDYAHTPDALEQALQSLR 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
               H +GR + V G   E     +     +A+ LS Y
Sbjct: 368 D---HAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDY 402


>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 534

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/489 (20%), Positives = 172/489 (35%), Gaps = 61/489 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL++ +    +     G ++G+S DSR   P + F  IKG   DGH ++   + KG  
Sbjct: 34  LADLVKPLLKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVS 93

Query: 67  LVVVNTDMVAS-----IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
            VV   D ++S     +  + IPV  V D   A                 +  +TG+ GK
Sbjct: 94  AVVAQYDCLSSEQKKLLTQIDIPVILVTDSRKAFAILASKYYNYPGDSLRVTGVTGTKGK 153

Query: 120 TTTKEMLTIALSSIKKT-YACIGSYNNHI-----------GVPLTLARM-----PVDVDF 162
           TTT  ++   LS  K+     IG+ N  I             PL L  +           
Sbjct: 154 TTTVNLIDKLLSEGKEVKTGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASH 213

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKT 220
              E+    + ++R     V   IAV T +AP HL   + ++E    K  I  F+GL+  
Sbjct: 214 VTLEVSSHAISQLRI--AGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPE 271

Query: 221 -----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +N DD +   +  +        + + G  +NA  + +        + +++ 
Sbjct: 272 KNDKPKLAVINLDDKYASYMLEQPAV----QVLTHGFDENAHVKGKIINTAETFTELKIT 327

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  V    IG     N+L  + +              L    P    G+  R  L 
Sbjct: 328 SPWGNFTVKTPLIGKFNCYNLLAAITVALFEGIPASKIQTILE--QPINIPGRFERIDLG 385

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q F  ++D  +     S++  +  L Q+     G+   V G     GE  +S    +   
Sbjct: 386 QEFTVVVD--FAHTTDSLQEVLQSLRQM---VSGKIGVVFGC---GGERDKSKRPKMGRA 437

Query: 396 LSLYNISHVWLSGFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDG 444
            S      ++++  +  A      ++D L       +  +              +   +G
Sbjct: 438 ASDLG-DKIFITSDNPRAEDPQKIVQDILSGCDVNNNEKIQIELDRAQAIEKSLNWAREG 496

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 497 DAVLIAGKG 505


>gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
 gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
          Length = 521

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 143/391 (36%), Gaps = 33/391 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL +A+     G        V GI+ DSR++ P + + A+ G  + G DF   A   G
Sbjct: 17  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A   + +      + +  +PV  V D  G +  LA             I ITG+ GKTTT
Sbjct: 77  AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 136

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRF--- 177
             ++   L +   +   IG+    IG     +    P   D       M   G       
Sbjct: 137 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 196

Query: 178 ---------LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        V   +AV   ++P H+   SG+E+   AKA++F    ++    +N+D
Sbjct: 197 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTR-ARSRRGVVNHD 255

Query: 229 DSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVH 285
           D +   L  ++       I +F      +AD++    +     S   V    G       
Sbjct: 256 DEYGRRLITEAEV----PIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGSRYPARA 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +  ++    D   A + +       GR +R     ++G   L    
Sbjct: 312 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV----DEGQPYLAVVD 367

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y     ++++ +  L +++   EGR   VLG
Sbjct: 368 YAHKTDAVESVLRSLRRVT---EGRVHVVLG 395


>gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces bingchenggensis BCW-1]
          Length = 544

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 167/469 (35%), Gaps = 54/469 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             +  V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        + 
Sbjct: 56  PEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAADLGAVAVLTDPGGADRAAAT 115

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEML-----TIALSSIK 134
            +PV  V++  G +  LA             I ITG+ GKTTT  ++       A     
Sbjct: 116 GLPVLVVENPRGRMGALAATIYGEPGRDLLQIGITGTSGKTTTAYLVEGGLKAAAAKGDG 175

Query: 135 KTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTH 180
                IG+  + IG                  L  +  +   G   + +S    +     
Sbjct: 176 SLTGLIGTVESRIGDERIKSERTTPEATDLQALFAVMRERGVGSLAMEVSSHALVLGRVD 235

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +AV T ++P H+   S +E+   AKA++F    ++    +N DD + + L   S 
Sbjct: 236 GCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQLFTK-ARSRAAVINLDDEYGKRLVDLSE 294

Query: 241 ALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNML 297
                 + +F      +A ++          S   +    G+S+       G     N L
Sbjct: 295 V----PVTTFSAEGHPDAHWRAADVTVGPLGSEFTILGPNGESVTAAAPLPGAFNVANTL 350

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  +++   D  TA   ++      GR +R     + G   L    Y     ++++ +
Sbjct: 351 AAVVALAVAGIDPQTAADGVAAVPGVPGRLERV----DAGQPYLAVVDYAHKTDAVESVL 406

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLA 413
             L +++   EGR  AVLG     G+  Q     +   ++ Y  + V  S        LA
Sbjct: 407 RALRKVT---EGRLHAVLGC---GGDRDQQKRGPMGAAVARYADTAVLTSDNPRSEDPLA 460

Query: 414 -LKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVV--KS 451
            L   L  +  V   E  D L             +    GD V+V  K 
Sbjct: 461 ILATMLAGAAEVPAHERGDVLVDADRAQAIAAAVARAEPGDTVLVAGKG 509


>gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii SDF]
 gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii]
          Length = 499

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 162/467 (34%), Gaps = 61/467 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             +        DV   + +       ++       IIA+TG+ GKTT   ++   +SS +
Sbjct: 76  EWVC------PDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELISSQQ 129

Query: 135 KTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N I   LT +                       F   E     L + R  
Sbjct: 130 QRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KA 237
            +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+ K+
Sbjct: 189 -NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF-NSLKVAVINLDDAHADLMIKS 246

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +      I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N+
Sbjct: 247 AQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENL 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L        D+   +  +       GR +  R         L    Y   P ++   
Sbjct: 307 IAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL--- 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           I VL  +  H   +  AV G   +     +          +L   + V L+         
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDP 414

Query: 412 LALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   + + I      +H          F+      GD+VV+  K 
Sbjct: 415 EQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/450 (21%), Positives = 163/450 (36%), Gaps = 46/450 (10%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S  +   + F A+ GP  DG  FI  A+ +GA  +V    +    G+    +   DD   
Sbjct: 25  SGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGVRLPEGAT-ARLVTHDDPRQ 83

Query: 94  ALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-- 149
           AL  LA AA         ++ +TG+ GKTT   +L        +    +G+ +       
Sbjct: 84  ALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTVSYRWPGFS 143

Query: 150 -------------PLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                           LARM    VD  + E+    L + R     +    AV+T +   
Sbjct: 144 MDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQR--VAGLAYDAAVLTNLTQD 201

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL     +E    AKA +F  L K G    +NY+D +   L  +  + G +++  +G   
Sbjct: 202 HLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAG-RSVLGYGLET 260

Query: 255 N----ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                   +       +    + V+ +G+  E+V   +G H A N+L  +G+   L    
Sbjct: 261 PPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFKLGLR- 319

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           ++ ++AL+ F    GR +R         F      Y   P ++   ++VLS +   G  R
Sbjct: 320 ESDMQALAGFTGVSGRLERVTNPHGLNVFV----DYAHTPDAL---VNVLSAVKALGVRR 372

Query: 371 RIAVLGDMCEMGELSQSF-------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            + V G         +         H D+A + S        L+   +  +K  L     
Sbjct: 373 LVCVFGCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDPLA--IIEDVKPGLSGCAR 430

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V                L   D +VV  K 
Sbjct: 431 VVIEPDRRKAIALALEGLTAEDALVVAGKG 460


>gi|25008815|sp|Q9JSZ8|MURC_NEIMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325130849|gb|EGC53582.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           OX99.30304]
          Length = 469

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 449 NMGAGSIN--RVPAALLE 464


>gi|302672146|ref|YP_003832106.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
 gi|302396619|gb|ADL35524.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
          Length = 539

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 131/318 (41%), Gaps = 25/318 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVD 161
           R      II ITGS GKT+ K  LT  LS   +      SYN  +G+  T+   +    +
Sbjct: 181 REHPGLRIIGITGSFGKTSVKYYLTTLLSEGYRVLMTPESYNTPMGIVRTIREHLMPTHE 240

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G  HL +I+ +T +V P   ++T+I   HL  F  ++ I S K E+ + +++  
Sbjct: 241 IFVCEMGARHLHDIKEITDIVHPDDGILTSIGHQHLETFHSLDNIISTKYELLDAVDEKM 300

Query: 222 TI---------FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
                      F+N D+            +  +   ++G S+  D++    K     +  
Sbjct: 301 KADGKKDAHLKFVNGDNEIIR------ANMKYEDAITYGLSEGCDYRATDIKVSGSGTSF 354

Query: 273 EVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V    G++ E     +G H  +N++  +   + L   +     A+        R +  +
Sbjct: 355 TVTAPNGETCEFATKLVGRHNVENIVGAIAAANSLGIPMTKLRIAVRRLASVPHRLELIK 414

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G  +++D++YN+NP   K A+  L          +I V   M E+GE    ++ +
Sbjct: 415 ----HGPVSILDDAYNSNPNGAKVALETLDLFEDQV---KILVTPGMVELGEKEDEYNKE 467

Query: 392 LAEVLSLYNISHVWLSGF 409
             +  +     ++ L G 
Sbjct: 468 FGKQAAAV-CDYIILVGE 484


>gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
 gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
          Length = 497

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 165/480 (34%), Gaps = 53/480 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ ++   +       +  I+ DSR       FF IKG   DGH +     +K
Sbjct: 8   MKKLADLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEK 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA +++V   +        + V  V++   A+  ++ A       K   I ITG+ GKTT
Sbjct: 68  GAAVLIVQDKVEVPEE---VTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166
           T  ++   L +       IG+    IG               V    A M       +  
Sbjct: 125 TTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDSVV- 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           + +S  G +   T   +  I + T I P H+         +    KA +F+  +      
Sbjct: 184 MEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLHCKALLFKQCK---VGI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SM 281
            N D    + +           + +FG S+ AD +    K  + +  + +    K   + 
Sbjct: 241 FNADADHLDEILEGHTC----QVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNF 296

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G     N L  + +        +   KAL     K     R         FTL
Sbjct: 297 PVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKVKG----RIEMVKVSDEFTL 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--------EMGELSQSFHIDLA 393
           + + Y  N  S+++ ++ L +  P+   R + + G           EMGE+S     DL 
Sbjct: 353 MID-YAHNAMSLESLLTTLKEYKPN---RLVCLFGCGGNRSKLRRYEMGEVSGKL-ADLT 407

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + S              + +        +V   +  + +   I      GD+VV+  K 
Sbjct: 408 IITSDNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHG-QPGDIVVLAGKG 466


>gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 149/405 (36%), Gaps = 43/405 (10%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  VVV      +   V +     IPV    ++L  L +             IA+ G+
Sbjct: 77  QGADAVVVSSAVQADNPEVQAAREYRIPVVRRAEMLAELMRFRYG---------IAVAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L+        +      +    + AR+     + + E   S    + 
Sbjct: 128 HGKTTTTSLVASVLAEGGLDPTYV--IGGRLNSSASHARLGSG-RYLVAEADESDASFLH 184

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I   HL  +    +++     E    L   G   L +DD     L
Sbjct: 185 -----LKPMMAVVTNIDADHLETYGGDFDQLRHTFDEFLHHLPFYGLAVLCHDDPVLRDL 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +      + + S+G +++AD +    +Q   ++   V     +  V  +  G H  QN
Sbjct: 240 GPEIA----RQVRSYGFAEDADLRAVDIEQSGRRTRFTVVDGEATFPVEVNLPGRHNVQN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   L  DV    +AL  F     R + +           + + Y  +P  + A
Sbjct: 296 ALAAIAVARELHVDVAAIQRALQRFQGIGRRFQDHGTLRFGDARVTLVDDYGHHPREIAA 355

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVL 412
               L  +     GRR+ V+         ++    D A VLS  +   ++ V+ +G   +
Sbjct: 356 ---TLRAVRDGWPGRRVLVVFQ-PHRYSRTRDLFEDFARVLSEADALLVTEVYAAGEPPV 411

Query: 413 ALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
           A      L  +I         + ET++ L   +     DGD+V+ 
Sbjct: 412 AGATGRGLCAAIRARGQVNPVFVETLEELQQVLPGVARDGDLVLT 456


>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
 gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
          Length = 505

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 154/427 (36%), Gaps = 44/427 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       +  +  DSR +AP   FFA++G   DG +F+  AV+ G
Sbjct: 1   MKLAQLLNCLASPELSGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V +           + V  V D   A++ +A A          ++ ITG+ GKTTT
Sbjct: 61  AVAIVADRPCACP----GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLT---------LARMPVDV--DFGIFE 166
             ++   +       A +G+ +       I  P T         + R  VD      + E
Sbjct: 117 TYLVEGIMEQAGVPAAVLGTISYRFGETNIPAPNTTPESVDLQAILRELVDHGARGAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R         +A+ + +   HL     +E    +K  +F  L      +  
Sbjct: 177 VSSHALEQHR--VDGCLFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPL 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD F   +  K+ A     + ++  +  AD  + + +   +     +      
Sbjct: 235 RRAVVNLDDPFGPRIAEKAAA----PVLTYSMTGKADISVAEAEFSVDGIRCRLNTPVGE 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    +G     N+L  +G    L    +     +       GR +R      +G   
Sbjct: 291 ISLASELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVETE--EGITV 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D  Y     +++  +S +S++      R I + G     G+  +     + E+ + Y+
Sbjct: 349 LVD--YAHTGDALENVLSTVSELKTD---RIITIFGC---GGDRDKGKRPVMGEIAARYS 400

Query: 401 ISHVWLS 407
              V  S
Sbjct: 401 DLAVITS 407


>gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 525

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 165/464 (35%), Gaps = 52/464 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   +N IS DSR+  PQ  F  + G ++DGH F+  A+ KGA ++      +    S
Sbjct: 37  GSPSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGAAVLAGENAAILEEFS 96

Query: 81  LSIP---VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              P       +D    L +L+     R+  K   + ITG+ GKTT    +   ++++  
Sbjct: 97  RKFPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALGI 156

Query: 136 TYACIG------SYNNHIGVPLTLARMPVDVDFGIF-----------ELGMSHLGEIRFL 178
               IG      S      V  T           IF            + +S +   +  
Sbjct: 157 PSGSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQR 216

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  +   +A+ T ++P HL      E    AK ++F   ++     +N DD        K
Sbjct: 217 TAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFRQAKR---AVVNLDDEGMGADIIK 273

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T YS  K   AD +    +  ++ +  E++L   S  V     G +   N+L 
Sbjct: 274 DFQGSLLT-YSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLS 332

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L   +   I+AL       G   R+      G   +I + Y   P ++K+ + 
Sbjct: 333 AICTAMHLGFTIGQIIEALPRVENPSG---RFEVLKEFGRRKIIID-YAHTPVALKSLLK 388

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW------------- 405
              ++    +   + + G    +G   +     +A+         V              
Sbjct: 389 EAKKLP--HKRLIVMITG----IGIRDKEKMPQMAQ-AVENQADQVIVSVDHPGFLDPWE 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G  +    +  PR+ ++    T     L   S   + D++++
Sbjct: 442 VVGHVMKGFSN--PRAGNILQEPTRRDGVLAALSVSDEDDLILL 483


>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
 gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
          Length = 486

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 175/479 (36%), Gaps = 55/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+  +   +I       V+ I+ DSR       F  I+G   DGH +I  A++ G
Sbjct: 1   MKLRELVMNLNIKAINGNLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
               +V   +V   G   I    +DD    L  ++ A      SK  +I ITG+ GKTTT
Sbjct: 61  TKAFLVQKHVVVPEG---ITTIEIDDTRFGLAAVSDAFFGHPSSKFNLIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVD---------------VDFGIFE 166
             M+   + +  +    +G+  N IG   L  +R   +               VD  + E
Sbjct: 118 TYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDMVEKKVDSTVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L E+  +       I V T  +  H+     + +EE  +AKA++F+   K     
Sbjct: 178 VSSQGL-ELHRVAK-CDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMCRK---AV 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N D      +   +       ++++G S  AD       + +  ++  +     S+++ 
Sbjct: 233 INIDSEHGRKMAELAKC----KVFTYGLSDKADIWASDIVKKTGHTYFTLNSPWGSIDIE 288

Query: 285 HHGIGYHMAQNMLMTLG-IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               G     N L  +G    I    ++               G+         +  LID
Sbjct: 289 TDLQGEFNIYNALAAIGSCCLIPGITLEHVRLG---LTKVTVPGRMESVKTGGNYSVLID 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P S++  +  + + +    GR +++ G     G+  +     + E+        
Sbjct: 346 --YAHTPDSLEQVLKTVKEFA---HGRVVSLFGC---GGDRDKGKRPAMGEISGNIADFT 397

Query: 404 VWLSG-------FHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           +  S          ++   +A  ++ +  Y +  D      F   + VDGD++++  K 
Sbjct: 398 IITSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKG 456


>gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/416 (23%), Positives = 154/416 (37%), Gaps = 40/416 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G++ID R +AP   F A  G  ++G DFI  AV  GA  VV   D         
Sbjct: 15  PNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPDAVAAGAVAVVARPDAKVDGAVH- 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                  +   A   +A     R  AT +A+TG+ GKT+T EM            A IG+
Sbjct: 74  ---VADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNAASIGT 130

Query: 143 YNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                 V      +                   V    FE     L + R  T  +    
Sbjct: 131 LGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYR--TEGLPVKA 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T ++  HL     +E   +AK  +F E ++  G   +  DD+    +   + A  ++
Sbjct: 189 AAFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARARDVR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G++  A  +L           + +     + +V    IG + A N L+  G+V  
Sbjct: 249 -VLTVGQAGEA-LRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAAGLVIA 306

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              DV   +  L+   P  GR +R   A +      I   Y   P +++AA+  L    P
Sbjct: 307 TGGDVALTLANLARLQPVRGRLERAAIARSGAP---IYVDYAHTPDAIEAALDALR---P 360

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
           H  GR I V G     G+  Q+   ++  V +      + ++     G     ++D
Sbjct: 361 HATGRLILVFGA---GGDRDQAKRPEMGRVAA-AKADLLIITDDNPRGEDPAVIRD 412


>gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
 gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
          Length = 495

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 91/492 (18%), Positives = 170/492 (34%), Gaps = 65/492 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +  LW   + L ++            +  + +DSR       F AIKG   DG +FI+ A
Sbjct: 4   LTALWDIDEQLDSVH-------RDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQA 56

Query: 61  VQKGAGLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAIT 114
           +Q GA  V+  TD+V          +IP+    ++   L+ +A         + T++ +T
Sbjct: 57  IQNGASAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPV 158
           G+ GKTT  ++L      +  T A +G+  N +   +  A                 +  
Sbjct: 117 GTNGKTTIAQLLAQWTQILGHTSAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQ 176

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF   E+     G ++     +     + T ++  HL     +E  A AK  +F  L 
Sbjct: 177 GADFAAIEVSSH--GLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELN 234

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--------LRKWKQCSEQS 270
                 LN DD        +        +     S  AD+Q               S+ +
Sbjct: 235 CQHK-ILNVDDEIGATWLIELSKDDPDVV---AVSCRADYQPDTKNWLKATALSFHSKGT 290

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +E      +  +    IG     N+L+ L  +  L  D+   +  +       G   R 
Sbjct: 291 TIEFASSWGNGILSSPLIGGFNVSNLLLVLATLLSLGYDIGKLLATVRQLTGVCG---RM 347

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +   T+I + Y   P +++ A+      + H +G+   + G   +     +    
Sbjct: 348 EMLSAKHKATVIVD-YAHTPDALENALQ---SAAVHCQGKLWCIFGCGGDRDRGKRPLMA 403

Query: 391 DLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +AE  +      V ++  +         +  +     +S  V      +        S 
Sbjct: 404 AIAEKFA----DSVIVTDDNPRTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSA 459

Query: 442 VDGDVVVV--KS 451
           V+ DVV++  K 
Sbjct: 460 VENDVVLIAGKG 471


>gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 461

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 140/390 (35%), Gaps = 34/390 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   ++  + A L  +   IA+ G+ GKTTT  M+ + L       A        I V  
Sbjct: 90  LTIWHRADLLAWLMEQKKGIAVAGTHGKTTTSAMIGLMLEQCGLDPA--------IIVGG 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +  +  +  +G  +   +   E       + P +AVIT I   HL ++   E I  A  
Sbjct: 142 EIREIEGNAKWGQGDFMAAEADESDRSFLKLSPWMAVITNIEADHLDHYQSFEAIVEAFY 201

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +  E L   G + L  DD   + +  +  A   + + ++G    AD++        + S 
Sbjct: 202 QFTERLSGDGILLLCADDPLLQEMAQRVTA---RRVVTYGMKAKADYRAVDLSCTGKGSQ 258

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            ++    + +  ++    G H   N L  +    ++      A  ALS F     R +R 
Sbjct: 259 ADIFRGEERLGRLMLSVPGEHNMSNALAAVACADLIGIPFAAAAAALSRFGGVGRRFQRM 318

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +     + + Y  +P  +KA ++   Q  P   GR +AV          ++  + 
Sbjct: 319 ----GEAKGVSVVDDYAHHPTEVKATLAAARQTQP---GRLVAVF--QPHRYTRTRDLYR 369

Query: 391 DLAEVLSLYNI---------SHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQS 439
           +  E     ++             + G     ++D   R       Y+   + L   +Q 
Sbjct: 370 EFGEAFDAADVVVLSEIYPAGEAPIPGVSSGLIRDVYERRCGRKALYAADKEELLRRLQD 429

Query: 440 SLVDGDVVVVKSSNS--CGFYRLINLLLEE 467
            +  GD+V+   + +      +L+  L   
Sbjct: 430 LVKPGDLVLTMGAGNIWMAGRQLLEALEAR 459


>gi|288575843|ref|ZP_05977704.2| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
 gi|288566858|gb|EFC88418.1| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
          Length = 469

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K      
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGSEQAP 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   + L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGEIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   +LE
Sbjct: 449 NMGAGSIN--RVPAAMLE 464


>gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 492

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 165/473 (34%), Gaps = 49/473 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+AI  +     P   V  + +DSR + P + F AIKG   DG  FI  A++ GA  ++ 
Sbjct: 4   LKAILKYIEIDAPSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGAVAIIA 63

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTI 128
             D +    +   P++ V ++   L +LA     +      +I +TG+ GK+TT  M+  
Sbjct: 64  --DRLCEFETSFEPLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKSTTTAMIAH 121

Query: 129 ALSSIKKTYACIGSYNNHIGVPLT-----------LARMPVDVDFG---IFELGMSHLGE 174
                    A IG+        LT           L R+  D+      +  + +S  G 
Sbjct: 122 LAQFCNSQSAIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAMEVSSHGL 181

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++      +   AV T ++  HL     +     AK  +F+  E    + LN DD   + 
Sbjct: 182 VQQRVAQCQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPE-LVVLNQDDGQTDQ 240

Query: 235 LKAKSHALGIKTIYSFGKS----KNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              K       ++  +G+     KNA F         ++    ++      + +     G
Sbjct: 241 WLEK---YSFNSLVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIKSPLFG 297

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+   L  +  L   +   I   +   P  G   R +    +G  T I + Y   
Sbjct: 298 EFNLYNLTAALATLLGLGYPLAQLIAGCAQLQPVAG---RMQAFSAKGKPTCIVD-YAHT 353

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P   +A    L  +  H  G    V G   +  +  ++         +  N   V ++  
Sbjct: 354 P---EALALALQALQQHVPGGVSCVFGCGGDRDKGKRALMAQ----AAEQNADKVIITSD 406

Query: 410 HVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +   L +    +          +  S+    +V+++  K 
Sbjct: 407 NPRSENPDAIIADVAQGLAQPTKAYLEADRATAISYAISNAKADEVILIAGKG 459


>gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
 gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
 gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2]
 gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
          Length = 499

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 162/467 (34%), Gaps = 61/467 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             +        DV   + +       ++       IIA+TG+ GKTT   ++   +SS +
Sbjct: 76  EWVC------PDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELISSQQ 129

Query: 135 KTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N I   LT +                       F   E     L + R  
Sbjct: 130 QRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KA 237
            +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+ K+
Sbjct: 189 -NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF-NSLKVAVINLDDAHADLMIKS 246

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +      I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N+
Sbjct: 247 AQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENL 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L        D+   +  +       GR +  R         L    Y   P ++   
Sbjct: 307 IAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL--- 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           I VL  +  H   +  AV G   +     +          +L   + V L+         
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDP 414

Query: 412 LALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   + + I      +H          F+      GD+VV+  K 
Sbjct: 415 EQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas
           maltophilia R551-3]
          Length = 502

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 155/480 (32%), Gaps = 47/480 (9%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+P      LL   A+ GH         + G+ +DSR++ P  AF AI G    G  F+ 
Sbjct: 1   MSPSMLLSQLLPDVALAGH------DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGS 116
            A   GAG ++       +     +    V  +   +  +             ++ +TG+
Sbjct: 55  QARAAGAGAIL-FEPPAPAELPAPVDAIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDF 162
            GKT+T ++L  A   +      IG+    +   +               L     D   
Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S     +     V   +AV T +   HL     +    +AKA +F        
Sbjct: 174 RAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHR-PGLKA 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+F   L A   A       S   + +A  +    +        E+ + G+   
Sbjct: 233 AVINLDDAFGRQLFAGLPAGVQPIGLSSRGATDAIVRAEALQLDGRGIAFELAIDGQRAA 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L   G +      +    + LS   P  GR  R      +     +
Sbjct: 293 VQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPIRGRMNRL---GGEDGLPTV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+  L     H +G    V G   E     +     +AE L+    +
Sbjct: 350 VVDYAHTPDALEQALDSLHG---HLQGTLFCVFGCGGERDTGKRPQMAAIAERLA----N 402

Query: 403 HVWLS-----GFHVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++     G     +          +  V    +              GD++++  K 
Sbjct: 403 QVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRANAGDIILIAGKG 462


>gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
 gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
          Length = 499

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 182/488 (37%), Gaps = 57/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI   +  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLA---VAARLRSKATI 110
           GA  V+V+TD     G           + I  F +   + A+             +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD 159
           I ITG+ GKT+T +++   ++S+ +  A +G+  N +   L           TL R   D
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 160 VDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +     +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEV 274
               G   LN DD+       +  ++  + ++ F     + A F  +  K   +     +
Sbjct: 237 -STLGHGLLNLDDAVGASWLTELKSVPAQ-MWGFSIEGHQAAAFYTKNAKFDDQGVSATL 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  E+    +G     N+L  L  + +   D+    + +    P  GR +R+  A 
Sbjct: 295 VWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAN 354

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + +
Sbjct: 355 N---ITLVVD-YAHTPDAIEQALNALRR---HCAGDLWCVFGC---GGDRDKGKRPLMGK 404

Query: 395 VLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGD 445
               Y    + ++  +  +      + D +    H   + T       I+  +     GD
Sbjct: 405 AAEQY-ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILLAGKG 471


>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
 gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase; AltName: Full=D-lysine-adding enzyme; AltName:
           Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
          Length = 490

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 173/485 (35%), Gaps = 59/485 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   +G  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS--------- 116
             VVV  ++      L  P   V D      K+A          ++    +         
Sbjct: 64  VAVVVEREI-----DLDFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118

Query: 117 ----VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-----IFEL 167
                  T+  E  ++  +++K+        +      +T+     +   G       E+
Sbjct: 119 MMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKENREGGGKFFALEV 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R     VR  + + T I+  HL      E    AK  +F+ L+  G   LN 
Sbjct: 179 SSHALVQQR--VEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN- 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E L    +    K   +FG SKNAD++L   +   E +   ++     ++V    
Sbjct: 236 -----ESLADAFNRKSRK--ITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRA 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N    +  +  L  D      +L  F   EGR +  R A   G   ++D  + 
Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P +++  +  + +IS   +GR I V G         +    ++A  L+      V L+
Sbjct: 347 HSPDALEKLLKNVRKIS---QGRVIVVFGAGGNSDRGKRPMMSEVASKLA----DVVILT 399

Query: 408 -----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                G     + + L + I          +  + +   + +    GD VV+ +      
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETAL-TIANRGDSVVI-AGRGHER 457

Query: 458 YRLIN 462
           Y++I+
Sbjct: 458 YQIID 462


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 144/404 (35%), Gaps = 33/404 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR + P + F A  G   DG   +  A+ +GA   +V  + V +    +  V  + D+
Sbjct: 37  TDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVEREGVEAFRFGAEGVAALRDL 96

Query: 92  LGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------YACIGS 142
             A   LA         +  ++A+TG+ GKT+T   +  AL+ +  +          IG+
Sbjct: 97  KAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWIADALNLLAGSGLATHGGCGLIGT 156

Query: 143 YNNHIGVPL--TLARMPVDVDFGIFELG------------MSHLGEIRFLTHLVRPHIAV 188
               +   L  T    P  V       G             S +G        +R  +AV
Sbjct: 157 LGVGVPPSLQGTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEHRLAGMRLRVAV 216

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T     HL   +G+     AK+ +F+         +N DD     L + + A     ++
Sbjct: 217 FTNFTQDHLDYHAGMAAYWQAKSALFDW-PGLQAAVVNIDDPRGGEL-SDTLAQRPIDLW 274

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +   +  A  Q R            V    ++  +    IG++   N+L  +  +  L  
Sbjct: 275 TTSITGPARLQARDVTWGEGGLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVVASLRALGI 334

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++ A+ A +   P  GR +      ++    L+   Y   P +++ A+  L  ++    
Sbjct: 335 PLEHALWACAQLAPVPGRMELI----HEPGQPLVAVDYAHTPDALEQALQALRPVAEQRG 390

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           GR   V G     G   ++    +  +        V ++  +  
Sbjct: 391 GRLWCVFGC---GGNRDRAKRPLMGRIAQQR-ADAVIVTSDNPR 430


>gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
 gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
          Length = 485

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 172/457 (37%), Gaps = 44/457 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           +  +  V  I  DSR +     FF + G   DGH +I  AV +GA  +V +  +      
Sbjct: 4   VEEEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHRG 63

Query: 81  LSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS------ 132
             +    V++VL  LN++A         K T+I +TGS GKT    M+   LS       
Sbjct: 64  --VLYIKVNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKMGY 121

Query: 133 --------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVR 183
                         C  +    I +   L  M      G+  E+    L   R     V 
Sbjct: 122 IGTNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKR--VDGVH 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IA+ T +   HL     +E + ++KA++F  +++ G   LN D+  F  L   S    
Sbjct: 180 FDIAIFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAILNTDEVRFYNLVKDSIRC- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G    A    R  +   + S  ++Q+      V    +G     N+L  +  +
Sbjct: 239 --HLLTYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITSM 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  ++++      +G   R     +   FT+I + Y  +  S +        +
Sbjct: 297 LALEMPMDQVLESVGYIRGVDG---RMELLEHPYPFTVIVD-YCQHAKSFEKVFQFAKSV 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             +  GR IAV G     G+ + +    + ++ + Y  + V L+             L +
Sbjct: 353 QTN--GRIIAVFGAP---GKKNYNKREKIGKLANQY-CNQVILTAEDNRDEDIHDICLDI 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ L + + V   +    +   I      GD++++  
Sbjct: 407 QEYLEKPVSVIIEDRRIAIEQAI-EIANHGDIILILG 442


>gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 480

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 169/450 (37%), Gaps = 46/450 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G++ DSR + P   F A KG   DG  F+  AV+  A  V+  T+   ++ +L  P  
Sbjct: 12  IEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATNAAEAVRALVPPTV 71

Query: 87  GV---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V   D+     +K+A     R   TI+A+TG+ GKT+    +     +     A +G+ 
Sbjct: 72  AVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAAGHPAASLGTL 131

Query: 144 N---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                           + + +   LA +  + + +   E     L + R     VR   A
Sbjct: 132 GIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRL--DGVRLTAA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     IE+   AK  +F E L   G + ++  + + + + A +   G+  
Sbjct: 190 AFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAIAEERGL-P 248

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +++ G++   D +L   +       + V+      +V    IG     N L+  G+    
Sbjct: 249 VFTVGETGK-DLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAAGLAITA 307

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D   A++AL       GR +        G    +D  Y   P ++  A++ L    P 
Sbjct: 308 GIDAGAALRALENLKGAPGRLE-LAGTTPAGGMVFVD--YAHKPDALDKALAALK---PF 361

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDA 417
            EG    V+G   +     +    +     +  +   V ++  +           A+   
Sbjct: 362 AEGSLSVVVGAGGDRDPGKRPLMGE----AAARHADLVIVTDDNPRSEDPATIRKAVLAG 417

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            P  + +   +  + +   I+  L  GD++
Sbjct: 418 APGGLEIG--DRAEAIAEGIRR-LKSGDIL 444


>gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
 gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 150/387 (38%), Gaps = 34/387 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +  + ARL  +   IA+ G+ GKTTT  M  + L           S++  I +   L+
Sbjct: 96  IRRGQMLARLMKEKKGIAVAGAHGKTTTTSMTALILEE--------NSFDPTIIIGGDLS 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E      L+ P+IAV+T I   HL  +   E IA A  +  
Sbjct: 148 NIGGNAKLGQGEYMVAEADESDGSFLLLDPNIAVVTNIEDDHLDYYGTRENIAKAFRQFL 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD    +LK  +  L  + +        AD+Q++  +  +  +  EV
Sbjct: 208 AKLSAEGLAVICLDDP---VLKEITTGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEV 264

Query: 275 QLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             Q + + ++  H  GYH   N +  + I   L  D +   +AL  F    G  +R++  
Sbjct: 265 YFQEERLGMLELHVPGYHNLLNAMAAVAIGRHLNLDFEKIARALRKFT---GAKRRFQVI 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 T++D+ Y  +P  +KA +           GR + +          ++    +  
Sbjct: 322 GKVNGITVVDD-YAHHPTEVKATLQAART---SHPGRIVTIF--QPHRYSRTKQLFKEFG 375

Query: 394 E---------VLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLV 442
           +         +  +Y  S + L G H   + DA+P      V Y  T+     ++     
Sbjct: 376 QSFTNGDLIILTDIYAASELPLEGVHTKLILDAIPLQEGQQVLYLPTLKDAADYLADYAN 435

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
            GD+V+   +     + L   L++   
Sbjct: 436 PGDLVLTMGAGDV--WTLGRELIKRLE 460


>gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus
           geothermalis DSM 11300]
 gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis
           DSM 11300]
          Length = 488

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 164/480 (34%), Gaps = 53/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL  A+       +P   V G++  +  + P   F AI+G  +DGH F+     +G
Sbjct: 1   MRLPDLAAALS-TPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A  V+   + + +  +  +P   V +   AL   A A          ++ +TG+ GKTTT
Sbjct: 60  AVAVLG--EGLPADVASPLPYLSVPNARAALADAAAALAGHPSRALKVVGVTGTDGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL-----------------TLARMPVDV--DFG 163
             +    L +       + +    +   +                 T  R  ++   +  
Sbjct: 118 SWLTRHLLRAAGLRTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEAGGEAA 177

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     L   R     V   +AV T ++  HL     +E   + K ++ E        
Sbjct: 178 VLEASSHALALDR--VRGVDWDVAVWTHLSSEHLDFHGTLENYFADKRKLIERAP---FA 232

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD +   L+  +     +T YS  ++++AD+Q R  ++ +     +V         
Sbjct: 233 VLNVDDPWTAQLRGVAPQ---ETTYS-AENQHADWQARHIEERATGLHFQVASPLGEFAA 288

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG     N L  +   + L A V   ++ L+ F    G   R            + 
Sbjct: 289 HLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPG---RMELVPGGASDPRVI 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +   P S++ A++ L   +    GR   +LG     G         L EV +      
Sbjct: 346 VDFAHTPPSLEKALTTLRATT---GGRLWVLLGSAG--GPRDPGKRAPLGEVATRLADHA 400

Query: 404 VWLS--------GFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           V+             +  ++     +   ++   E       F+      GD V++  K 
Sbjct: 401 VFTEEDCRDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKG 460


>gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter heparinus DSM 2366]
 gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 167/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  +       V    V+ +  DSR +    AFFAIKG   DGH +I   V  G
Sbjct: 1   MQLQDILYGVTITDQIGVTNRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYIAATVSAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           AG+V+   +++ +  +  +    V +   AL ++A         K  +  ITG+ GKTT 
Sbjct: 61  AGVVIC--EVLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLTGITGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELG 168
             +L     ++      I +  NHI   +               L +  VD       + 
Sbjct: 119 ATLLFKLFRALGYKVGLISTVENHINDEVIPATHTTPDPLALNALLQDMVDAGCDYCFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++     +     V + I   HL      ++   AK   F+ L  +     N D
Sbjct: 179 VSSHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKKAFFDALPASAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++   + ADF+ +  +   +     + L     +V    +
Sbjct: 239 DKNGMVMLQNTRAAKK----TYALKQLADFKAKVIENSFKG----LHLDIDDADVFFKLV 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L  +    +  LS     EGR      + +          Y  
Sbjct: 291 GSFNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFDYITSSQHIIGIV----DYAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +S +  I    E + I ++G     G+  ++    +A+V   ++   V L+ 
Sbjct: 347 TPDAVQNVLSTIQDIRKGTE-QVITIIGC---GGDRDKTKRPIMAQVACDWS-DKVILTS 401

Query: 409 -----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +   + + + + +                           GD++++  K 
Sbjct: 402 DNPRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGKG 457


>gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
 gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
          Length = 493

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 176/484 (36%), Gaps = 55/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL            +     +++DSR+I   + F A+ G   DG  FI  A+ +
Sbjct: 1   MMLLRDLL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-------ARLRSKATIIAITGS 116
           GA  V+V+TD +   G +     GV      L K   A               I+ ITG+
Sbjct: 57  GAIAVLVHTDSIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGI 164
            GKT+T ++    ++ ++   A +G+  N +   L             + ++    D G+
Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLYEFADKGV 176

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKT 220
               + +S  G ++     V   +AV T +   HL     +E  A+AK  +  F+ L   
Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDALRHG 236

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQG 278
               +N DD       ++   +  K ++ F    +  A F  +  +   +    ++    
Sbjct: 237 ---LVNLDDPVGAAWLSELANVPAK-MWGFSIEAHTEAAFYTKNAQFNDQGVQAKLVWPE 292

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +++    +G     N+L  L  + +   D+      +    P  GR +R+  A N   
Sbjct: 293 GEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTADN--- 349

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            TL+ + Y   P +++ A++ L +   H  G    V G   +  +  +      AE  + 
Sbjct: 350 ITLVVD-YAHTPDAIEQALNALRR---HCAGELWCVFGCGGDRDKGKRPLMGQAAEQCA- 404

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + ++  +  +         +   L                  + +    GDV+++
Sbjct: 405 ---DRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILL 461

Query: 450 --KS 451
             K 
Sbjct: 462 AGKG 465


>gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
 gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB056]
 gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB058]
 gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB059]
 gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
          Length = 499

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 161/467 (34%), Gaps = 61/467 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             +        DV   +         ++       IIA+TG+ GKTT   ++   +SS +
Sbjct: 76  EWVC------SDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELISSQQ 129

Query: 135 KTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N I   LT +                       F   E     L + R  
Sbjct: 130 QRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KA 237
            +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+ K+
Sbjct: 189 -NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF-NSLKVAVINLDDAHADLMIKS 246

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +      I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N+
Sbjct: 247 AQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENL 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L        D+   +  +       GR +  R         L    Y   P ++   
Sbjct: 307 IAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL--- 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
           I VL  +  H   +  AV G   +     +          +L   + V L+  +      
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDP 414

Query: 411 ---VLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +K  +      +H          F+      GD+VV+  K 
Sbjct: 415 EQIFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 511

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/504 (18%), Positives = 181/504 (35%), Gaps = 72/504 (14%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                +L+ I+       I     +  I  +S+ I     F AIKG   DGH +IL A +
Sbjct: 1   MNLRKILKNIEILDTKNFIDFDVDIKKICYNSKFITESSLFVAIKGYITDGHKYILQAYE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120
           KGA   +V   +        IP   V++    L  ++         K  I+ IT + GKT
Sbjct: 61  KGAVCAIVEDFIDCE-----IPQLKVENTRIELANVSKNFYDDPSQKLNIVGITATNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFGIFE----------- 166
           TT  ML    +        IG+       I +P ++   P  ++   F            
Sbjct: 116 TTSFMLDKIYNDAGYRTGIIGTVYTKYSDITIP-SVLTTPESLELQSFFRDMLKKKIEKV 174

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S   E  +    +  +I      +  H+      E+   AK+++ +   K     L
Sbjct: 175 TMEVSSSSEELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKEASKNAVAIL 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWM-----------E 273
           N D    + L  ++ A     + ++  ++ + DF + +    +                +
Sbjct: 235 NMDFDHIKDLLTQTKA----RVITYSLENNDYDFSISELDLSTGFGKYIFNVNRNIDFND 290

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             L+ +S E+     GY    N +  + I  +   DVD   K++S F   E   +R+   
Sbjct: 291 FVLKKQSFEINLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVE---RRFEMI 347

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            ++ F  +ID+ Y AN  ++   +  LS++         A+       G    + + + A
Sbjct: 348 YDEKF-KIIDDHY-ANVKNIDVTLETLSKMKYKNFRMLYAI------RGNRGVNLNRETA 399

Query: 394 E----VLSLYNISHVW-LSGFHVLALKDALPR-------------SIHVHYSETMDGLFL 435
           E     L   +    +       ++ KD + +             +I+V   + ++    
Sbjct: 400 EETAKWLKKLDAKTFYATLSKDTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVY 459

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYR 459
            I  +   GDVV+   +   G  +
Sbjct: 460 EILKTADKGDVVLF--AGCQGMDK 481


>gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus metallidurans CH34]
 gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 515

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 151/461 (32%), Gaps = 53/461 (11%)

Query: 33  DSRSIAPQEAFFA--IKGPH--YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           D+R + P + FFA  +       DG   I  A+  GA  +V   D  A      +P   V
Sbjct: 35  DTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIVYEADNFAWPHDDRVPHLAV 94

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             +      +A           TI  +TG+ GKT+  + L   L       A IG+  + 
Sbjct: 95  SHLHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCATIGTLGSG 154

Query: 147 IGVPLTL--------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               L L                   D       + +S  G  +         +AV+T +
Sbjct: 155 FPDALKLTGFTTPDAVQLQASLAELHDAGARAVAMEVSSHGLEQGRVAGTGFAVAVLTNL 214

Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYS 249
              HL     + E  +AKA +F  +GL+      +N DD   + L A  + A+    +  
Sbjct: 215 TQDHLDYHGTMAEYEAAKARLFAWDGLKA---AVINRDDGMGQRLLASNAVAVSAPQVIE 271

Query: 250 FGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +G    A          +    +     +   V     + +V    IG     N+L  LG
Sbjct: 272 YGIDGKAGASVARGQWLRATGVRATGAGTAFHVDGSFGTADVTTPMIGAFNVSNLLAVLG 331

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                    D AI AL    P +GR + +          L    Y   P ++   ++ L 
Sbjct: 332 AALAQGVTWDAAIDALRRLTPVDGRMELF----GGHDAPLAVVDYAHTPDALVQTLTALR 387

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            ++   +G+   V G   +     +     +AE L+      V L+  +           
Sbjct: 388 PVAQARQGKLWCVFGCGGDRDATKRPLMGGVAERLA----DEVVLTSDNPRSEDPREILE 443

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+ D +         E      L+        DVV+V  K 
Sbjct: 444 AIADGMSDRARAALIEDRAAAILYAIKHAAPADVVLVAGKG 484


>gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 165/458 (36%), Gaps = 53/458 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G ++DSR +A    F A  G   +G DFI    +K      V       +     
Sbjct: 23  DYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAIVARPEVKIEGA 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                ++   A  ++A          + A+TG+ GKT+  E+     +      A IG+ 
Sbjct: 79  VHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIGTL 138

Query: 144 NNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                       M                  D+   IFE     L + R  +   +    
Sbjct: 139 GVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR--SDGAKVIAG 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T+ +  HL     +E   +AK  +F+  +   GT  +  DD     + A     G+K 
Sbjct: 197 AFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKRGLK- 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G+   A  +L   +  S+   + + ++G+S ++    IG +   N L+  G+V   
Sbjct: 256 LIDIGEKAEA-IRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALVAAGLVLAT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+   + AL++  P  GR +R   + N     +    Y   P  ++AAI  L    PH
Sbjct: 315 GGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYV---DYAHTPDGLRAAIEALR---PH 368

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA---- 417
            EG    V G     G+  +    ++ ++ +     HV ++     G     ++      
Sbjct: 369 TEGLLWVVFGA---GGDRDKGKRPEMGKIAANL-ADHVIVTDDNPRGEDAATIRKEVLVG 424

Query: 418 --LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L   I        + +F  I+ +   GD+V++  K 
Sbjct: 425 APLAEEIGGR----KEAIFSAIKRA-EKGDIVLIAGKG 457


>gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 495

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 138/402 (34%), Gaps = 28/402 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V G+ +DSR +AP +AF AI G    G  F+  A   GAG V+       +
Sbjct: 13  DVALPHDVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVL-FEPPAPN 71

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              +      V  +   L         R      ++ +TG+ GKT+T ++L  A++ +  
Sbjct: 72  GMPVPADAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
           V   +AV T +   HL     + +  +AKA++F   GL+      +N DD+F   L A  
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA---AVVNLDDAFGRTLFASL 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    S     +A    +  +         + +QG+   V    +G     N+L  
Sbjct: 249 DPALRAIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  L          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 309 AGALWALEIAPAQIATVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           L     H + R I V G   E     +     +AE+ +   I
Sbjct: 366 LRS---HAQDRLICVFGCGGERDTGKRPQMAVIAELNADVAI 404


>gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
 gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
          Length = 488

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 99/458 (21%), Positives = 178/458 (38%), Gaps = 44/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 I+ DSR +     F A  G H DG  +I  AVQ GA  VV   +         +
Sbjct: 8   NKSFTSITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQV 67

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V D+   +  +A        SK T+I +TG+ GKT+  + +   L+ + K  A +G
Sbjct: 68  SNLAVQDLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKTAVLG 127

Query: 142 SYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  N      T A                 +    D    E+    L + R   + V   
Sbjct: 128 TIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGR--VNGVAFD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AK ++F   E   T  +N DD+F + L +  +A   K
Sbjct: 186 VAVLTNLSRDHLDYHETMEAYAAAKQKLFAW-EGLITAIVNTDDAFGKSLVSALNAQ-DK 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G + +AD Q    K       M++        +    +G   A N+L  L  +  
Sbjct: 244 PCLTYGLT-SADVQGSDLKLHDTGLTMQINTPQGHALLSAPVLGRFNAYNVLAVLATLLA 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +  +++A++   P  GR +++      G   L+   Y   P +++  +S L +   
Sbjct: 303 LKVSLPDSLEAIAKIKPVLGRMQQF----GGGDLPLVVIDYAHTPDALEKVLSTLKEQID 358

Query: 366 HGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL 418
                 + I V G   +     +    ++A  L+      V+++       +  A+  A+
Sbjct: 359 LAASSVKLICVFGCGGDRDAGKRPLMGNIASKLA----DQVFVTSDNPRSENPAAIIAAV 414

Query: 419 PRSIHVHYSETMDGLFLFIQSSLV---DGDVVVV--KS 451
              +   Y    D     I++++     GD+V+V  K 
Sbjct: 415 VSEMKAGYVVDADRA-NAIRAAIQGANSGDIVLVAGKG 451


>gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 506

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 171/479 (35%), Gaps = 52/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            V GI+ DSR++ P + + A+ G    G DF+  AV  GA 
Sbjct: 17  LAELADQLGAEP--PQKAAQVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  V+D    + +L   +          I ITG+ GKTTT  
Sbjct: 75  AVLTDPTGAERAAATGLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L  ++ T   IG+    IG     +    P   D       M   G     +   
Sbjct: 135 LVEGGLKGVRST-GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 193

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           I V T ++P H+   SG+E+   AKA++F   E++    +N DD 
Sbjct: 194 SHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTP-ERSRLGVVNLDDE 252

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           +   L  ++       + +F      +AD++    +     S   V   + + +      
Sbjct: 253 YGRRLVKEATV----PVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERISARSPL 308

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  ++    D  TA   ++      GR +R     + G   L    Y 
Sbjct: 309 PGPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERV----DAGQPYLAVVDYA 364

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++++ +  L +++   EG+   VLG     G+   +    +    +    + V  S
Sbjct: 365 HKTDAVESVLKALRKVT---EGKVHIVLGC---GGDRDTTKRGPMGAAAARLADTAVLTS 418

Query: 408 G----FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   LA+         ++P      V   E          +    GD V+V  K 
Sbjct: 419 DNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKG 477


>gi|150020386|ref|YP_001305740.1| Mur ligase middle domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149792907|gb|ABR30355.1| Mur ligase, middle domain protein [Thermosipho melanesiensis BI429]
          Length = 511

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 21/353 (5%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDF 162
            R    ++AITGS GKT+TK  L   +S   KT    GSYN  +G+   +  ++    D 
Sbjct: 164 KRLNPEVVAITGSYGKTSTKFYLYHLISEYYKTLMTPGSYNTTMGITKVIREKLDKSHDV 223

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL  +       L  LV P I+VIT+I   H   F     I     +  +       
Sbjct: 224 FIVELAENDNYGFEKLLDLVNPTISVITSIGIQHFEEFENESNILDNFKKYIKDSRSGKK 283

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ-GKS 280
             +N+DD     +      +  K I S G ++K A +++   K   + S   ++    + 
Sbjct: 284 FVVNFDDENIRKI------IKNKDIISCGIENKEAQYRIVDLKLDKDGSNFVLETPNNQK 337

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E   +  G     ++L+ +     L   V+  I+        + R +  R        T
Sbjct: 338 FEFTTNVYGKENVLDLLLAIVTAFELKVPVEEIIERAKNIVKPKHRLEVIR----DDTIT 393

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+++N+NP   K A+  LS     G+ R+I +     E+GE     H  L +++S Y 
Sbjct: 394 VIDDTFNSNPKGFKMALEYLSLF---GKRRKILITPGFVELGEKEDEEHYKLGKLISKY- 449

Query: 401 ISHVWLSG-FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  V+L        + + L  S     ++   ++D +   +++ L  GDVV+ 
Sbjct: 450 VDVVFLVDKKRTKKILEGLEDSNFTGEIYTVNSLDEVTEMLKTFLKSGDVVLF 502


>gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella piezotolerans WP3]
 gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans
           WP3]
          Length = 488

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 166/460 (36%), Gaps = 51/460 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
             N +++DSR++   + F A+ G   DG  +I  A+  GA  V+V+TD     G++S   
Sbjct: 18  VFNDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVLVHTDSPEEHGNISTDD 77

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              I  F ++  +  L           +  II +TG+ GKT+  +++        K  A 
Sbjct: 78  GLLISFFQLNRQVSVLAA-QAYPLSSKRPKIIGVTGTNGKTSVTQLIAQLQQLQSKQTAV 136

Query: 140 IGSYNNHIGVPLT---------------LARMPVDV-DFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N +   L                L        D    E+    L + R     V 
Sbjct: 137 MGTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVSSHGLVQGR--VEAVP 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV T ++  HL     +E   +AK  +F          +N DD+      A   A  
Sbjct: 195 FDVAVFTNLSRDHLDYHHTMEAYGAAKQRLFTF-SSLRAGLINCDDAIGASWLA--QATS 251

Query: 244 IKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            KT+ +S   +  AD   ++           +       ++    +G     N++  LG 
Sbjct: 252 TKTLGFSIKGNTKADIYAKQCLYHDGGVTCTLVWPEGEAKLQSPLLGDFNLSNLVAALGA 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + ++  D+   ++  S   P  GR +R+  +   G  TL+ + Y   P +++ A+  L  
Sbjct: 312 LYLVGEDMAAIVRLASALTPVAGRMERFTTS---GNVTLVVD-YAHTPDAIEQALQALR- 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
              H +     + G   +     +      AE  +     HV ++  +  +      + D
Sbjct: 367 --VHCKSELWCLFGCGGDRDSGKRPMMASSAEQFA----DHVMVTSDNARSENPEDIIAD 420

Query: 417 ALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++           + +    GD+V++  K 
Sbjct: 421 VFSGFTEPQKAQSQVNRKTAIREVVALAKPGDMVLLAGKG 460


>gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella cf. novicida 3523]
          Length = 475

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 173/477 (36%), Gaps = 55/477 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKNINQILKFLDIQTLSQN-NFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              LV+ ++        +   +  + + L AL K     +      II ITG+ GKT+  
Sbjct: 60  DISLVLTDSHEFEDQKRIFY-IQNLKEKLSALAKWFYDYKKPQN--IIGITGTNGKTSIS 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGM 169
             +   L    +    +G+  N I   L  +                  +    + E+  
Sbjct: 117 SYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYHKNYQNLVMEVSS 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R  T  +   +AV + ++  HL     ++    AKA++F+  +      +N DD
Sbjct: 177 HSLDQKR--TEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKLFQF-KSLKKAIINIDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
            + + L   +       I +   KS+ AD  ++       ++  E+   G+ + E     
Sbjct: 234 EYGQRLCNITKV----PIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+ ++   +  +  D D  +  L      +GR +      +     +ID  Y 
Sbjct: 290 IGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKSVKGRMEVIEL--DNDIKIVID--YA 343

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-------- 399
             P +++ A+  L+  +P+       + G         +     +AE  +          
Sbjct: 344 HTPDALEKALQTLANYNPNN---LWCIFGCGGNRDTTKRPIMAQIAEEYASKIVVTEDNN 400

Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              NI +++        +K          +  + +    F   +   GD++++  K 
Sbjct: 401 RFENIENIF------SDIKKGFKYPQKHTFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS195]
 gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS195]
 gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS678]
          Length = 499

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        + +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFSDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLA---VAARLRSKATI 110
            A  V+V+TD     G           + I VF +   + A+             +   +
Sbjct: 57  SAAAVLVHTDDADQHGKVLHSDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD 159
           I ITG+ GKT+T +++   ++S+ +  A +G+  N +   L           TL R   D
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 160 VDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +     +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEV 274
               G   LN DD+       +  ++  + ++ F     + A F  +  K   +     +
Sbjct: 237 -STLGHGLLNLDDAVGASWLTELKSVPAQ-MWGFSIEGHQAAAFYTKNAKFDDQGVSATL 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  ++    +G     N+L  L  + +   D+    + +    P  GR +R+  A 
Sbjct: 295 VWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAN 354

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + +
Sbjct: 355 N---ITLVVD-YAHTPDAIEQALNALRR---HCVGDLWCVFGC---GGDRDKGKRPLMGQ 404

Query: 395 VLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGD 445
               Y    + ++  +  +      + D +    H   + T       I+  +     GD
Sbjct: 405 AAEQY-ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGD 463

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 464 VILLAGKG 471


>gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 494

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 176/480 (36%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I+   +    +  +  ++ DSR +     F  IKG   DG  ++  AV+KG
Sbjct: 1   MKLTNLLRPIKYSILQGESEPDIEKVTHDSREVERDTLFVCIKGSATDGALYVGEAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++ +  +        I V  V + L  +  +        + T+I ITG+ GKTTT  
Sbjct: 61  AVAILADRRIEVPREVTFILVENVRETLAKIASVF-YGEPSKEMTVIGITGTKGKTTTAY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168
           M+   L         IG+    IG     A+                     D  + E+ 
Sbjct: 120 MIYHILEQSGYKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEMVLQKCDIAVMEVS 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              L   R  T  ++  I V T +   H+        EE  + KA++F     +     N
Sbjct: 180 SQGLKLHR--TDEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLFSQ---SDFGIAN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSM-EV 283
            D  ++  +  +++      + + G SK AD+        + S +  +  +L GK   ++
Sbjct: 235 MDSPYWREMFLRANC----DVETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKDRGDI 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V    G     N L  + +   L    +   ++L     K   G+  + + N+G   LID
Sbjct: 291 VLSMAGRFNIYNSLCAIAVCRRLGVSFENIRQSLCKTQVK---GRVEQISTNKGTIILID 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+++ + ++    PH   R I + G     G  ++    ++ +V        
Sbjct: 348 --YAHNAMSLQSILEMVHSYRPH---RIICIFGC---GGNRAKERRYEMGKVSGALADFT 399

Query: 404 VWLSG--------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S           +  +++ +    + +Y E    +    +        D++V+  K 
Sbjct: 400 IITSDNPRYENPLQIMSEIREGVEDG-NGNYLEICNREEAIRYGIKYAGAADIIVIAGKG 458


>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
 gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
          Length = 508

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 93/464 (20%), Positives = 169/464 (36%), Gaps = 47/464 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA------S 77
              + GI+ +S+ I  +  F AIKG   DGH +I  A+   A +++ +            
Sbjct: 25  NIEIRGIAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKAAIIIYDNSADKNFIKELE 84

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKK 135
                +    V +    L  ++          I  IAITG+ GKTTT  +L   L + K 
Sbjct: 85  DKHTYVYFIAVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKSVLEANKN 144

Query: 136 TYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLT 179
             A IG+  N IG       +                  +V   + E     L   R   
Sbjct: 145 KTALIGTIKNMIGKTEIKTNLTTPESIDLENIFDKALKKEVSHIVMEASSQALAMDR--C 202

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----GTIFLNYDDSFFELL 235
             +    A+ T I   HL     ++    AK ++F  L+++        +N D   F+ +
Sbjct: 203 DYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKNKKLAIVNIDTDNFKQI 262

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQ 294
                 LGIK + ++G ++ AD+  +     S+ +  E   +GK +  V    +G     
Sbjct: 263 SNYIKKLGIKMV-TYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSMLGRFNIL 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L  VS    D++ +IKA+           R+     +    +    Y+  P S++
Sbjct: 322 NSLSVLAYVSEYKLDIEKSIKAMRKVQVAG----RFEIVTKEKHPFIAAVDYSHTPDSLE 377

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-----SHVWLSGF 409
              ++L +       R I V G   +     +     +AE  S  +I             
Sbjct: 378 ---NILKEARKLNPKRVIVVFGCGGDRDRKKRPIMASIAEKYSDISILTADNQRTEDINQ 434

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  ++       +    +  + +F  I+ +  + D+V++  K 
Sbjct: 435 IMNDIEKGFKNKDYKKIIDRKEAIFEAIKEA-KENDIVIIAGKG 477


>gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
          Length = 483

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/457 (19%), Positives = 148/457 (32%), Gaps = 38/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+     + G++ DSR +     F A+ G   DG      +    A        +     
Sbjct: 11  GLPADPEITGVTADSRKVRAGTLFAALPGTKVDG-----ASFAAAAIQAGAAAVIADRDL 65

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +P     D   A    A     R     +A+TG+ GKT+         +   +T A 
Sbjct: 66  GLPVPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSAS 125

Query: 140 IGSYNNHIGVP--------------------LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           +G+    +  P                      +      +    F +  S  G  +   
Sbjct: 126 MGTLGVTVSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRL 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAK 238
             V+   A    +   HL     +E   +AK  +FE  L + GT  LN D   F    A 
Sbjct: 186 DGVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPA-FAA 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  +  + +   G++  A  +L K +   E  W+ +  +G+S +V     G   A N L+
Sbjct: 245 AAVIAGQWVMPVGET-GATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALV 303

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+       ++     L       GR +R       G   +    Y   P  ++   +
Sbjct: 304 AAGLCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGGEAYV---DYAHTPDGLE---T 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKD 416
           VL  + PH  GR I V G   +     +     +A  L+   I       S        +
Sbjct: 358 VLKALRPHVRGRLIVVFGAGGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAIRAE 417

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L                    + L DGD++VV  K 
Sbjct: 418 VLAGCPGAAEIGDRREAIREAVAMLRDGDILVVAGKG 454


>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 321

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 102/327 (31%), Positives = 156/327 (47%), Gaps = 58/327 (17%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    L +A+    I I      N +  +S+ +   + F A++G   DGHD++L A+ K
Sbjct: 2   IWNSETLNKALG---ITISNFINCNEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAIDK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+  +  +       +  V+D   AL K+A+  R  SKA  IAITGSVGKT+TK
Sbjct: 58  GAVAVIVSKQIDIADKD---KIILVEDCFEALQKMALYKRENSKAKFIAITGSVGKTSTK 114

Query: 124 EMLTIALSSI-------------------------------------------------- 133
           E L   L+                                                    
Sbjct: 115 EALKTLLTEANYKSLDLLYNEANKEEFEGNTERSTAAYTLVREDVSTGLTYKLPLEASYI 174

Query: 134 -KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               +A  G++NNH+G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+IT I
Sbjct: 175 RGLIFASRGNFNNHLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNI 234

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           + AHL  F+  EEIA AK EIFE   K     +N D + +  + +    L I  I+SFG+
Sbjct: 235 SEAHLEFFNSFEEIAEAKCEIFENFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGR 294

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGK 279
           S     +L  ++   EQ +++ ++  K
Sbjct: 295 SSKTSAELVLYENLGEQVYLKYKINNK 321


>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
 gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
          Length = 486

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 152/460 (33%), Gaps = 53/460 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                ++GIS D+R+I P E F A+ G   DGH F+  AV+KGA  V+ +         L
Sbjct: 18  DEDVEISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICHKAPEEPGPWL 77

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-IKKTYACI 140
                       + N      R   + T+I +TG+ GKTTT  +L   L   +      +
Sbjct: 78  IAADTRAALAAVSANWF---GRPADELTVIGVTGTNGKTTTTYLLKAMLEGVLGAKVGLM 134

Query: 141 GSYNNHI--------------GVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+  N I                   L R   D      + E+    L   R     +  
Sbjct: 135 GTNQNMIGEKVIPAHRTTPESWEVQKLLRDMADSGCTHVVMEVSSHALALHR--VDGIAF 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + + T +   HL     +EE    K  +F    +TGT  LN DD       +       
Sbjct: 193 QVGIFTNLTRDHLDFHGTMEEYRRVKGLLF---RQTGTAVLNLDDEAGRYYASIVTCPA- 248

Query: 245 KTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++ ++K+ AD   +  +   ++   E    G    V     G     N L  +   
Sbjct: 249 ---LTYSENKDQADVTAKNIRLFPDRVEFEALTTGAIARVRLPIPGGFTIYNALGVIACG 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +     +L+     +G   R         + +I + Y   P +++  ++ +   
Sbjct: 306 LALKLPLPQVCASLAEAKGVKG---RIEVVPTPTDYAVIID-YAHTPDALENILTTVRDF 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
           +P   GR I + G     G+  +S    +  + +      V L+          A+   +
Sbjct: 362 TP---GRVICLFGC---GGDRDRSKRPVMGAIAAEL-ADLVVLTSDNPRTEDPEAILADI 414

Query: 419 PRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +                          GD VV+  K 
Sbjct: 415 QAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKG 454


>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
 gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
          Length = 505

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 172/497 (34%), Gaps = 70/497 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       +  +  DSR + P   FFA++G   DG +F+  AV+ G
Sbjct: 1   MKLRQLLACLTAPKVTGDDAAEITSLCYDSRQVRPGALFFALRGVKSDGTEFVESAVKGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV +     +     +    V D   A++ +A        +   ++ ITG+ GKTTT
Sbjct: 61  AVAVVADRPCAVA----GVTCIEVPDPRRAMSLMAALFYGVPTAGIPLVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLAR-----------MPVDVDFGIFE 166
             ++   +       A +G+ +       I  P T              +       + E
Sbjct: 117 TYLMEGIMEQAGIPTAVLGTISYRFGATSIPAPNTTPESVDLQQILRDLVDQGAKGAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L +           +A+ T +   HL     +E    +K  +F  L      +  
Sbjct: 177 VSSHSLEQ--RRADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLAPTGEKPL 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD +     A+  A     + ++  +  AD  + + +         +      
Sbjct: 235 RRAVVNLDDPYG----ARIAAEAAAPVLTYAAAGPADLTVAEVEFSVHGIRCRLNSPVGE 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    +G     N+L  +G    L    D     ++      GR +R     +QG   
Sbjct: 291 IDIDSDLLGRFNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLER--VPNDQGIIV 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D  Y     +++  +S ++++      R I + G     G+  +     + E+ + Y+
Sbjct: 349 LVD--YAHTGDALENVLSTIAELKTD---RIITIFGC---GGDRDKGKRPVMGEIAARYS 400

Query: 401 ISHVWL-----------------SGFHVLALK----DALPRSIHVHYSETMDGLFLFIQS 439
              +                   +G   L LK    + L   +      T++     +++
Sbjct: 401 DLAIVTSDNPRTEEPKAILDDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRA 460

Query: 440 SL---VDGDVVVV--KS 451
           ++     GD+V++  K 
Sbjct: 461 AIMAARPGDIVLLAGKG 477


>gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum GMI1000]
 gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide
           synthetase) (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 514

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 152/464 (32%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ G   V+               +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEAHGYVVPADAPARI 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L     A        +I +TG+ GKT+  + +  ALS   +  A +G+
Sbjct: 93  LPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       +  E+    L + R      R  I
Sbjct: 153 LGTGFVDALVATGFTTPDAIQLQHSLADLHRAGARAVAMEVSSHGLEQGR--ADGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     + E   AKA +F G        +N DD+    L A   A GI+ 
Sbjct: 211 ALFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGGRLLAGLRA-GIEA 268

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  +G    A          +    +     +  +V        V    +G     N L 
Sbjct: 269 VE-YGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG++ +       A+  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGVLLMAGVPWQDALARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    G+  AV G     G+        +  +       HV L+  +  +     
Sbjct: 384 ALAPITGARGGKLWAVFGC---GGDRDPGKRPQMGAIAERL-AQHVVLTSDNPRSEDPQL 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DV+VV  K 
Sbjct: 440 ILDMIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAGKG 483


>gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
 gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
          Length = 500

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 162/470 (34%), Gaps = 66/470 (14%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI-------KGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           PQ   +G S+DSR +   + F A+       K   +    F   A+  GA  V+  T++ 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTF----FAEAALANGALAVISETELG 73

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALS 131
            +   +        DV   + +       ++       IIA+TG+ GKTT   ++   +S
Sbjct: 74  VANEWVC------PDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELIS 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEI 175
           S ++  A +G+  N I   LT +                       F   E     L + 
Sbjct: 128 SQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQG 187

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R   +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+
Sbjct: 188 RL--NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF-NSLKVAVINLDDAHADLM 244

Query: 236 KAKSHALGIK-TIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +     +  I ++  ++N AD+ +         +   +  Q  S  V    +G+   
Sbjct: 245 IESAQNNPAQPKILTYSLTQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPLLGHFNV 304

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N++  L        D+   +  +       GR +  R         L    Y   P ++
Sbjct: 305 ENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
              I VL  +  H   +  AV G   +     +          +L   + V L+      
Sbjct: 360 ---IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRT 412

Query: 409 FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +   + + I      +H          F+      GD+VV+  K 
Sbjct: 413 EDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 462


>gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 513

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 184/495 (37%), Gaps = 59/495 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I + + K
Sbjct: 1   MKRINQILKFLDIQTLSQN-NFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAK 59

Query: 64  GAGLVVVNT-DMVASIGSLSIP------VFGVDDVLGALNKLAVAARLRSKA-TIIAITG 115
           G  L++ +     +SI + S+       +F V+++   L+ LA       K   II ITG
Sbjct: 60  GTKLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVD 161
           + GKT+    +      + +    +G+  N I   L  +                  +  
Sbjct: 120 TNGKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQ 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L + R  T  +   IAV + ++  HL     ++    AKA++F+  +   
Sbjct: 180 NLVMEVSSHSLDQKR--TEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQF-KNLK 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKT----------------IYSFG-KSKNADFQLRKWK 264
              +N DD + + L   ++    +                 I +   KSK AD  +    
Sbjct: 237 KAVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKS 296

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             + Q+  ++ +  K +       +G     N+ ++L  +   +   D  ++ +S   P 
Sbjct: 297 IENMQTSFDLYISQKHIGTYQTSLVGEFNLMNLGLSLAALDDSS-TRDQLLENISKLKPV 355

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +    AL  G   +ID  Y   P +++ A+  L    P+       + G       
Sbjct: 356 KGRMEV--IALVNGAKIIID--YAHTPDALEKALQTLVNYHPNN---LWCIFGCGGNRDT 408

Query: 384 LSQSFHIDLAEVLSLYNI-----SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
             +     +AE  +   +     +           +K         ++ ++ +    +  
Sbjct: 409 TKRPIMAQIAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFIDSREKAIKYTI 468

Query: 439 SSLVDGDVVVV--KS 451
            +    DV+++  K 
Sbjct: 469 ENSKANDVILLAGKG 483


>gi|284799407|ref|ZP_06390126.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
 gi|284797770|gb|EFC53117.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
          Length = 469

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 157/436 (36%), Gaps = 50/436 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  +    L +           +    +   L     +   G  E  
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAG--------LDPTFVIGGKLNAAGTNARLGKGEYI 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           ++   E       + P ++V+T I   H+  +   ++++  A  +    +   G  FL  
Sbjct: 159 VAEADESDASFLYLTPIMSVVTNIDEDHMDTYGHSVDKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSME 282
           D      +  K      K   ++G    AD      +    Q    V +Q      +  E
Sbjct: 219 DSEHVRAILPKIS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           VV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A +S      P     +  VL         ++    D  +VL+  + 
Sbjct: 335 LVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTVDA 390

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVK 450
              + V+ +G   +A  D  AL R+I +       Y E +  L   + + L DGDVV+  
Sbjct: 391 LVLTEVYAAGEEPIAAADSRALARAIRILGKLEPIYCENVADLPQMLLNVLQDGDVVLNM 450

Query: 451 SSNSCGFYRLINLLLE 466
            + S    R+ + L+E
Sbjct: 451 GAGSIN--RVPSALVE 464


>gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
 gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
          Length = 486

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 99/463 (21%), Positives = 168/463 (36%), Gaps = 35/463 (7%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+ G S  +     +  ++ DSR   P   FFA++G   DG  FI  A+ +GA  V+V  
Sbjct: 8   ALCGTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQGAAAVIV-- 65

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D   +    ++PV    D    L  +A A      + I AITG+ GK++T + L      
Sbjct: 66  DQETARPDSAVPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTADFLRQLWIL 125

Query: 133 IKKTYACIGSYN----------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
                A +G+                  + + +  TLA +  +    +     SH  E  
Sbjct: 126 QGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVALEASSHGLEQH 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY--DDSFFE 233
            L   V    A  + +   HL     +E   +AK  +F+  L   G   +N   D   F 
Sbjct: 186 RL-DGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNADMDSETFS 244

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
            L+  +    +K + S G++     +L + +       + + L G+ + E+     G   
Sbjct: 245 ALQDIAARRSLK-LRSVGRN-GTTLRLIEARPTPSGQILRLALHGEELPEISLSLPGRFQ 302

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+++   +     AD    +  L       GR +R   AL  G    +D  Y   P +
Sbjct: 303 ADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCER-AVALPNGAAAYVD--YAHTPDA 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFH 410
           +     VLS + PH  GR + V G   +     +     +A  ++   I       +   
Sbjct: 360 LDC---VLSSLRPHTTGRLVVVFGAGGDRDRGKRPLMGAVAARMADLAIVTDDNPRTEEP 416

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                + L                     +L  GD++VV  K 
Sbjct: 417 SSIRSEILAACPDALEIADRRSAIAAGLEALQPGDILVVAGKG 459


>gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Herminiimonas arsenicoxydans]
 gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 159/459 (34%), Gaps = 51/459 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSRSI   + F A  G   DG  +I  A+++GA  ++ +          ++P   +D++ 
Sbjct: 28  DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEWNVPHLAIDNLR 87

Query: 93  GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
                +A A           +A+TG+ GKT+  + L  ALS + +  A IG+    I   
Sbjct: 88  ACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVGIFKH 147

Query: 151 LT----------------LARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITT 191
                             L R  V++         +  S +G  +   + V   +A+ T 
Sbjct: 148 GEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMALFTN 207

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTI 247
               HL     +    +AK  +F+         +N DD+      E LK +   +GI T 
Sbjct: 208 FTRDHLDYHGDMAAYEAAKTMLFDW-PGLRHAVVNLDDALGVRLVERLKRRQSGIGI-TG 265

Query: 248 YSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           Y+      AD         +     +  ++  +     V    +G     N+L  +GI+ 
Sbjct: 266 YTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGIIGILL 325

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +   + A+       GR +     L      L+   Y   P +++  ++ L +++
Sbjct: 326 AKGIALSNVVAAIEALTSVPGRMQ----QLGGAEAPLVVIDYAHTPDALEKTLATLREVA 381

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
               G    V G     G+        + +  +     H+ ++          ++   + 
Sbjct: 382 NERGGALWCVFGC---GGDRDAGKRPQMGK--AAMAADHIIVTSDNPRHEEPASIIAQIV 436

Query: 420 RSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + V     H  E      L+        DV+++  K 
Sbjct: 437 AGMDVAKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKG 475


>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 265

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 4/252 (1%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL +      +    +  +N ++I+S+ +  +  FFAIKG + DGH F+   ++K + ++
Sbjct: 7   DLQKIFNKEILN--KKININNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVI 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV  +      +L      V   + +L   A   RL S+   + ITGS GKTT K ML+ 
Sbjct: 65  VVKNNFKVPKNNLH-KFIKVRSPIRSLENFAKYQRLTSQGKFVGITGSFGKTTLKYMLSF 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    KT++   S+NNH G+PL+L+  P +  F IFELGMS   EI  L+ ++RP I V
Sbjct: 124 FLEQYGKTFSSPKSFNNHFGLPLSLSNTPKNSQFNIFELGMSSSREIDKLSQILRPDIGV 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I PAHL NF  ++ +  AKAEI   +++ G I LN DD +F  L   ++   +K I 
Sbjct: 184 ITNIGPAHLKNFKNLKAVCLAKAEIMNHIQENGYIVLNKDDFYFNTLFKIANNKKLK-II 242

Query: 249 SFGKSKNADFQL 260
           +F KSK A+ QL
Sbjct: 243 TFSKSKKANVQL 254


>gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
 gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
          Length = 483

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 99/450 (22%), Positives = 169/450 (37%), Gaps = 37/450 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             + G+S DSR+I    AFFAI G   DG  ++  A  +GA +VV       S     +P
Sbjct: 19  IEIAGLSADSRAIREGFAFFAIPGHAGDGLSYVDDARARGARVVVAQRQSECS-----LP 73

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VDDV   L   A     R    I A+TG+ GKT+    L    +++    A +G+  
Sbjct: 74  LVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKTSVVASLRQIWTAMGHEAASLGTVG 133

Query: 145 N-----------HIGVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAVIT 190
                           P+ L R+  D    G+  L M  S LG  +     VR  +A  T
Sbjct: 134 VVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLAMEASSLGIDQRRLDGVRLSVAGFT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +  HL +   +EE  +AK  +F+ L + G T  ++ D      + A     G+  ++ 
Sbjct: 194 NFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVIDADSDVAPRVAAVCEKRGL-NVFG 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G    A   +R+ +  +  + ++++  G    V     G     N L+  G+      D
Sbjct: 253 VGAKGEA-IAVREARAHALATSLKLRHAGVDYSVELPLAGAFQTSNALVAAGLAIAAGDD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 AL+      G   R      +    +  + Y   P +++  ++ L    P  + 
Sbjct: 312 PARVFSALNELKGAPG---RLEFIGERDGAPVFVD-YAHKPDALEKVLATLR---PLTKR 364

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSE 428
           R I V G   +     +    ++A   +   I +          A++ A+        +E
Sbjct: 365 RLIVVFGCGGDRDRGKRPLMGEIAARAADVAIVTDDNPRSEDANAIRAAIIEGARGGGAE 424

Query: 429 TMD-----GLFLFIQSSLVDGDVVVV--KS 451
            ++            + L  GDV+VV  K 
Sbjct: 425 IIEIADRGEAISKAVADLRAGDVLVVAGKG 454


>gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 428

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 151/410 (36%), Gaps = 36/410 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
              V+ + +DSR+I   ++F AI G   DG  FI  AVQ GA  V+   D     G ++ 
Sbjct: 29  DIVVSNLELDSRAIQQGDSFVAIIGHTVDGRLFIERAVQAGATSVLAQADSEHKHGEVTY 88

Query: 83  ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +P+  +   L  L  +  A   + +  +I +TG+ GKTT  +++   +  +    A 
Sbjct: 89  IGEVPIIHLYQ-LDTLLSVIAARLYQYQQQVIGVTGTNGKTTITQLIAQWIGLLGDKAAI 147

Query: 140 IGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
           +G+  N                I V   LA++      +   E+    L + R     V 
Sbjct: 148 MGTTGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQGAHYTAMEVSSHGLVQGR--VAAVP 205

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + + T ++  HL     +E   +AK  +F G        LN DD       ++     
Sbjct: 206 FKLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGHHCE-HAVLNIDDVVGRRWLSERSDAI 264

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++    + +         K       +E         +    IG   A N+++    +
Sbjct: 265 AVSVEGRQEGERG-LWATTVKYSDSGISLEFDGYFGQGNLQAPLIGQFNASNLMLAFASL 323

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D++   +      P  GR + ++          I   Y   P +++ A+  L   
Sbjct: 324 LALGFDIEHLQQTAPKLQPVLGRMELFQTTSKPK----IVVDYAHTPDALEKALLALR-- 377

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             H EG+   ++G   +  +  +     +AE L+     HV LS  +  +
Sbjct: 378 -VHCEGKLWVIVGCGGDRDKGKRPMMAAIAERLA----DHVILSDDNPRS 422


>gi|241760232|ref|ZP_04758328.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
 gi|241319343|gb|EER55808.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
          Length = 469

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 157/436 (36%), Gaps = 50/436 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  +    L +           +    +   L     +   G  E  
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAG--------LDPTFVIGGKLNAAGTNARLGKGEYI 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           ++   E       + P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 159 VAEADESDASFLYLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSME 282
           D      +  K      K   ++G    AD      +    Q    V +Q      +  E
Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           VV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A +S      P     +  VL         ++    D  +VL+  + 
Sbjct: 335 LVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTVDA 390

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVK 450
              + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+  
Sbjct: 391 LVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVVDLPQMLLNVLQDGDVVLNM 450

Query: 451 SSNSCGFYRLINLLLE 466
            + S    R+ + L+E
Sbjct: 451 GAGSIN--RVPSALVE 464


>gi|224477766|ref|YP_002635372.1| hypothetical protein Sca_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422373|emb|CAL29187.1| hypothetical protein SCA_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 675

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 178/402 (44%), Gaps = 10/402 (2%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG+  I   V++   + ++ T+      +  IP   V + + A+  LA+  R   +  I+
Sbjct: 63  DGNSQIPKDVKE---IGLIITESYVEGLAKKIPQIVVKNSIKAMKILALYIRKNYRNPIV 119

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS+GK++T+ MLT AL+ + K     G+ N    + L + ++  + D  IFE  ++ 
Sbjct: 120 CITGSMGKSSTRLMLTAALAPL-KVQENRGNSNTRSAIYLHMCKLAANPDIAIFETSLNA 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L     +  +++P IA++T I  AHLS     EEIA  K+ IF GL + G    N D   
Sbjct: 179 LNNRGNMASVLKPDIAIVTGIGSAHLSTIGSTEEIAEYKSRIFAGLNEKGIAIYNADTLH 238

Query: 232 FELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              LK  +     K +Y +  ++  AD    +     +   ++V+    +       +  
Sbjct: 239 NAFLKDVALKHTSK-VYGYSTENSKADLYTEEITPIRKA--VKVKTNDGTH-FTVPSVSN 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            M +N L  L  +  L  +VD  +  LS     +   +           TL+D+++NA+ 
Sbjct: 295 GMVENALAVLLTLKHLDINVDEKLDNLSNTQLFKKVLEFKNIHSATENATLLDDTHNASL 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +M  AI      S   EG +I  LG + ++GE + + H  L  +L      ++      
Sbjct: 355 PAMINAIQAFDSQSKFFEGHKIIALGQISDLGEQTDNVHAKLVPILEQSKADYILCMDEP 414

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +  + + + +  H+ +      L   ++  +    +V++KSS
Sbjct: 415 LRKVVNKV-KGKHITWYRNAQLLLQDLRLLINQDALVLMKSS 455


>gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
 gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
          Length = 468

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 178/468 (38%), Gaps = 60/468 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++ DSR +   +AF AI+G   DG+ +I  AV++GA +V    ++        + V 
Sbjct: 7   ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTEREIDHRE----VQVV 62

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VD+    L +L   V         ++ +TG+ GKTTT  ++    S    T   IG+  
Sbjct: 63  KVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLIGTVK 122

Query: 145 NHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +G  +  A +                  +VD    E+    +   R     +   I V
Sbjct: 123 IKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHR--VEGLDFDIVV 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      E+  + K E+F+   +  T  +N DD + + + +   A     + 
Sbjct: 181 YTNLTKDHLDLHEDFEDYLATKKELFKQAGEESTALINLDDEYADRIMSGLSA----EVI 236

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++G S  AD Q+ +    +  S   ++      +  E+  + +G H   N L    +  I
Sbjct: 237 TYGFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLI 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V+      +         +R     +   FT+ID+    NP + +A    + ++  
Sbjct: 297 YGLSVEEIK---AQLKEFNPFFRRLEVIYD-DKFTIIDDC-AHNPGNYRAVFETIKELDY 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----NISHVWLSGFHVLA-------- 413
                R+ ++  +   G    +   + AE++S Y    N+S ++++    LA        
Sbjct: 352 D----RLYIINAI--RGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANKYDVVSD 405

Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 L       +   Y + +          +   D++++  +++ 
Sbjct: 406 EEREVFLSTLCDSGLEFEYFDYLHPCLNQTLKQVKSNDLIILLGAHAM 453


>gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 512

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 86/495 (17%), Positives = 179/495 (36%), Gaps = 59/495 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIQTLSQN-NFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVAS------IGSLSIP-VFGVDDVLGALNKLAVAARLRSKA-TIIAITG 115
           G  L++ +     S      +    +P +F V+++   L+ LA       K   II ITG
Sbjct: 60  GTKLILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVD 161
           + GKT+    +      I +    +G+  N I   L  +                  +  
Sbjct: 120 TNGKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYYKNYQ 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L + R  T  +   IAV + ++  HL     ++    AKA++F+      
Sbjct: 180 NLVMEVSSHSLDQKR--TEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQF-RSLK 236

Query: 222 TIFLNYDDSFFELLKAKSHALGIKT----------------IYSFG-KSKNADFQLRKWK 264
              +N DD + + L   ++    +                 I +   KS+ AD  +    
Sbjct: 237 KAVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKS 296

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             + Q+  ++ +  K M       +G     N+ ++L  +   +   +  ++ +S   P 
Sbjct: 297 IENMQTSFDLYISQKYMGTYQTSLVGEFNLMNLGLSLAALDDSS-TREQLLENISKLKPV 355

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR +    AL  G   +ID  Y   P +++ A+  L    P+       + G       
Sbjct: 356 KGRMEV--IALVNGAKIIID--YAHTPDALEKALQTLVNYHPNN---LWCIFGCGGNRDT 408

Query: 384 LSQSFHIDLAEVLSLYNI-----SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
             +     +AE  +   +     +           +K          + ++ +    +  
Sbjct: 409 TKRPIMAQIAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFIDSREEAIKYTI 468

Query: 439 SSLVDGDVVVV--KS 451
            +    DV+++  K 
Sbjct: 469 ENSKANDVILLAGKG 483


>gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
 gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
          Length = 511

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 91/494 (18%), Positives = 165/494 (33%), Gaps = 63/494 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + I     G      + G+  DSR +     FFA++G   DGHD+I+ +  +G
Sbjct: 1   MRLEDLARVINPSEAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VVV        G        VDD   A+++ A A          ++ ITG+ GKTTT
Sbjct: 61  AVAVVVEDPSRVPEGMTW---LKVDDARLAMSRAAAAFYGNPTDGIPVVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLAR-----------MPVDVDFGIFE 166
             ++   ++      A +G+ +       I  P T              +       + E
Sbjct: 118 TYLVEAVMARAGIPVAVLGTISYRFGDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L +        R  + V T +   HL     +E    +KA +F  L      +  
Sbjct: 178 VSSHALEQ--RRVDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPR 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD +   L + + A     + S+G S +   +        +     +     +
Sbjct: 236 RAAVINVDDPYGARLASDAVA----PVVSYGLSPSVMVRAEMVTFSVDGISGTLVTPLGT 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      +G     N+L  +     L    D     +       GR +R     N    T
Sbjct: 292 IPFHSRLLGRFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERV---DNDHGIT 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y     +++  +  +++I+    GR I V G   +     +    ++A   S  +
Sbjct: 349 VLVD-YAHTGDALENVLKTVAEIAT---GRIITVFGCGGDRDRGKRPVMGEIAGRFSDLS 404

Query: 401 ISH--------------VWLSGFHVLALKDALPRSIHVHY-------SETMDGLFLFIQS 439
           I                  L G   L L++     +   +        E+          
Sbjct: 405 IVTSDNPRTEDAGAIIGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAAR 464

Query: 440 SLVDGDVVVV--KS 451
               GDV+++  K 
Sbjct: 465 VARPGDVLLLAGKG 478


>gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
 gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
          Length = 488

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 168/456 (36%), Gaps = 51/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ IS DSR++ P   F A  G  + G DFI  AV  GA  V++++  ++   ++ +PV 
Sbjct: 25  VSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADGAVAVLIDSSELSDCPNVDVPVI 84

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           G+ D++  +  +A     +     T++ ITG+ GKT+    +  A+++I    A +G+  
Sbjct: 85  GISDLVSEIGPVAARFYEQPSRAMTVVGITGTNGKTSCAHFVAQAMNNIGVKTAIVGTVG 144

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N     L  A                      +  + E+    L + R     V     +
Sbjct: 145 NGFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVVMEVSSHALEQGR--VAAVDFDYGL 202

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E    AKA +F+         +N DDSF   L         K   
Sbjct: 203 FTNLSRDHLDYHGSMEAYGEAKARLFKEFNLK-AALINGDDSFGRKLLRDESIEARKVSV 261

Query: 249 S--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              FG+     +    ++        E++    +       IG     N+L+   ++S  
Sbjct: 262 GRLFGQ-----YHFAAYRLALHGIEAELKTPAGNFAFASKIIGEFNLDNLLLVAALLSEQ 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  +++LS      GR +    A       L+   Y   P +++ A   LS +  H
Sbjct: 317 GFSKAQVMESLSQLDSVPGRMQAVVAA----DKPLVIIDYAHTPDALEKA---LSAVRAH 369

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
             G    V G   +     +     +A+ L+     H+ ++  +            ++  
Sbjct: 370 TTGTLWCVFGCGGDRDAGKRELMGRIADQLA----DHLVVTSDNPRTESPERIIEMIEQG 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +      ++    + L I  +    DVV++  K 
Sbjct: 426 ICQHEPAIEADRAAAIRLAIMQA-SPEDVVLIAGKG 460


>gi|65317674|ref|ZP_00390633.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 247

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 107/253 (42%), Gaps = 11/253 (4%)

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           GL++ G    N D+        + + +      +FG ++  D+        +  +  ++ 
Sbjct: 3   GLQEGGVFVYNGDEPLLTNRVPEMNLIA--ETVTFGDARANDYYPTTVTLQATGTHFKMN 60

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + +++      +G H   N L ++ I        +   + L         G R      
Sbjct: 61  -REENISFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKT 116

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T+I+++YNA+P +M+AA  +++ +      ++I VLGDM E+G+    FH ++ ++
Sbjct: 117 DSGLTIINDAYNASPTAMEAAFHLMNGLDGF--SKKIVVLGDMLELGDQEVQFHYEVGKL 174

Query: 396 LSLYNISHVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +    IS+V+  G     + +       +  V   +  + L   +Q+ +   DVV+VK+S
Sbjct: 175 IDPAKISYVFTYGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKAS 234

Query: 453 NSCGFYRLINLLL 465
                  +I +L 
Sbjct: 235 RGMKLEEVITMLK 247


>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
 gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
          Length = 519

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 162/469 (34%), Gaps = 49/469 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNT 72
           IG V +  ++ +S+DSR + P   FFA +G    GH +I  AV +GA  +V      V+ 
Sbjct: 32  IGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIVYDPVIPVSP 91

Query: 73  DMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            +   +   +IP+  + D+   L         +   +  ++ +TG+ GKT+    L  AL
Sbjct: 92  VIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTSVSHFLAQAL 151

Query: 131 SSIKKTYACIGSYNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGE 174
              +     IG+                   I V   LA M      + + E+    LG+
Sbjct: 152 HRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVLEVSSHALGQ 211

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R     V  +IA+ T ++  HL     +    +AK  +F          +N DD+    
Sbjct: 212 GR--VSGVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLF-NQPGLRHAVINGDDAAGRA 268

Query: 235 LKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             A  +        S+G  +  A     K +       M +Q      ++    +G   A
Sbjct: 269 FLA--NLPPEVKAISYGLMNPQASLHTGKLRCDRHGIAMTIQSAWGEGQLTCPLLGRFNA 326

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  LG +  +      A++ LS      G   R      +    L+   Y   P ++
Sbjct: 327 YNLLAALGGLLAVGMPFTEALQRLSQVRAVVG---RMESLGGEEGEPLLVVDYAHTPDAL 383

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
           +  +  L        GR   V G         +      AE L+      V L+  +   
Sbjct: 384 EQVLRSLRA-HLGPGGRLWCVFGCGGNRDRGKRPLMGAAAERLA----DFVMLTDDNPRN 438

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 ++ +   +     V+         +         D+V++  K 
Sbjct: 439 EDPIQIIVDILSGIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKG 487


>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
 gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
          Length = 490

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/483 (19%), Positives = 175/483 (36%), Gaps = 55/483 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   KG  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE- 124
             VVV  ++      L  P   V D      K+A          ++    +     T   
Sbjct: 64  VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTT 118

Query: 125 -MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFG---IFELGM 169
            M+   L+S+ +  + + +    I              +T+     +   G    F L +
Sbjct: 119 VMIYHMLTSLGEKGSVLTTAVKRILENSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN  +
Sbjct: 179 SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN--E 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           S  +    KS         +FG SKNAD++L   +   E +   ++     + V    IG
Sbjct: 237 SLADTFNRKSRK------ITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N    +  +  L  D      +L  F   EGR +  R A   G   ++D  +  +
Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHS 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
           P +++  +  + +IS   +GR I V G         +    ++A  L+      V L+  
Sbjct: 349 PDALEKLLKNVRKIS---QGRVIVVFGAGGNSDRGKRPMMSEVASKLA----DVVILTTD 401

Query: 408 ---GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              G     + + L + I          +  + +   + +    GD VV+ +      Y+
Sbjct: 402 DPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETAL-TIANRGDSVVI-AGRGHERYQ 459

Query: 460 LIN 462
           +I+
Sbjct: 460 IID 462


>gi|269213849|ref|ZP_05982991.2| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
 gi|269145192|gb|EEZ71610.1| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
          Length = 469

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 159/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKS 280
             D      +  K      K   ++G    AD      +    Q    V +Q      + 
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIESAGAQMKFTVHVQMKGHEQEP 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   +LE
Sbjct: 449 NMGAGSIN--RVPAAMLE 464


>gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas europaea ATCC 19718]
 gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas
           europaea ATCC 19718]
          Length = 521

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 172/479 (35%), Gaps = 65/479 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  +  DSR + P + F A  G  +D  + I  A+ +G   ++      +      I
Sbjct: 23  DVKVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEKQGFSWKPEWKI 82

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P  GV  +     K+             ++ ITG+ GKTT  +    A++++ K  A IG
Sbjct: 83  PNLGVAGLRHEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKTAVIG 142

Query: 142 SYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  +     L  +                 +       + E     L + R +       
Sbjct: 143 TLGHGFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLI--GSEFA 200

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           +AV+T +   HL     ++  A+AKA++F  EGL+      LN D+     L  +     
Sbjct: 201 VAVLTNLTRDHLDYHDSMDAYAAAKAKLFFWEGLQ---YAVLNLDEVLGVELSQQLAGKD 257

Query: 244 IKTIYSFGKSKNAD----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +I  +G  +                   +  ++Q   +V+   +   +  +  G + A
Sbjct: 258 L-SIIGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQIGFDVEFCNRYASLQCNVTGRYNA 316

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  L  +     D+D AI AL    P  GR +     L  G   ++   Y   P ++
Sbjct: 317 YNLLAVLAALLASNIDLDDAITALRQVQPIPGRME----KLGGGNQPVVIVDYAHTPDAL 372

Query: 354 KAAISVLSQISP---------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
              ++ L +              + + I V+G     G+  +     + E+ S      V
Sbjct: 373 NEVLTGLRETLAGTRIKKRIRKNQAKLICVIGC---GGDRDRGKRPLIGEIASRL-ADEV 428

Query: 405 WLSGFHVLA------LKDALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVVV--KSS 452
            ++  +         + + +  +   H +  +D    ++  I  +   GD+V++  K +
Sbjct: 429 IITSDNPRNENPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGA-RKGDIVLIAGKGA 486


>gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 495

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 167/483 (34%), Gaps = 57/483 (11%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL   + I    +  + +  ++ I  DSR       F AIKG   DGH ++  A 
Sbjct: 1   MKLSELLTGLEYISNRDMDQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYVDSAY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           QKG    VVN +M  +  ++      VDD    L+ ++         +  +I +TG+ GK
Sbjct: 61  QKGCRAFVVNDNMDLAEDAIM---IIVDDSRNCLSHISANFFGNPSKELKVIGVTGTKGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIG--------------SYNNHIGVPLTLARMPVDVDFGIF 165
           TT    L   L+        IG              +            R  VD      
Sbjct: 118 TTITNYLKSVLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREMVDAGVKCV 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
            + +S  G +    + V   I + T ++P H+        E+    K+ +F         
Sbjct: 178 AMEVSSGGLMMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLFSLCRHG--- 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----QGK 279
            +N DD     +  K+       I +F   K +D++         ++ + V       G+
Sbjct: 235 IINIDDDHASYMIDKATC----DIETFSIKKPSDYRAEDISLTRTKTSLGVDFKYIRDGQ 290

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + +      G     N L  +   + L  D D  + AL+          R     +    
Sbjct: 291 ASQTHIASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQVDG----RVEVIPSIPDI 346

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++ + Y  N  S++  +  L +  P    R I V G +   G  S     +L +V +  
Sbjct: 347 TVVLD-YAHNGVSLENVLETLLKYKP---RRLICVFGSI---GGRSVLRRKELGDVAAKL 399

Query: 400 -NISHVWL---SGFHVLALKDALPRSI---HVHYSETMDGLFLFIQ--SSLVDGDVVVV- 449
            +IS +          + + + +  S         + +D     ++       GD+V+V 
Sbjct: 400 CDISILTTDNPDDEDPMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVA 459

Query: 450 -KS 451
            K 
Sbjct: 460 GKG 462


>gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces avermitilis MA-4680]
 gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Streptomyces avermitilis
           MA-4680]
          Length = 506

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 172/479 (35%), Gaps = 52/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   +        V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELAGQMGAAT--PERDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  VDD  G + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPTGADRAAATGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L +++ T   IG+    IG     +    P   D       M   G     +   
Sbjct: 135 LIEGGLRTVRST-GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVS 193

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           IAV   ++P H+   S +E+   AKA++F     +    +N+DD 
Sbjct: 194 SHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQLFTPQR-SKLGVVNFDDE 252

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           +   L  ++       I +F      +AD++ +  +     S   V   + + +      
Sbjct: 253 YGRRLVEEAGV----PIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERITARSPL 308

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  ++    D   A   ++      GR +R       G   L    Y 
Sbjct: 309 AGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDV----GQPYLAVVDYA 364

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++++ +  L +++   EG+   VLG     G+  ++  + +    +    + V  S
Sbjct: 365 HKTDAVESVLRALRKVT---EGKLHIVLGC---GGDRDRTKRMPMGAAAARLADTAVLTS 418

Query: 408 G-----------FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         +LA    +P      V   E        + +    GD V+V  K 
Sbjct: 419 DNPRSEDPLAILATMLAGAAEVPSHERGEVQVFENRAAAIAAVVARARPGDTVLVAGKG 477


>gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CMR15]
          Length = 514

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 158/464 (34%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTD---MVASIGSLS 82
           ++ D+R +   + F A   G      DG   I  A++ G   V+       + A+  +  
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEAHGYVVPANAPARI 92

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV G+ ++ G L     A        +I +TG+ GKT+  + +  ALS   +  A +G+
Sbjct: 93  LPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       I  E+    L + R      R  I
Sbjct: 153 LGTGFVDALVATGFTTPDAIQLQHSLADLHRAGARAIAMEVSSHGLEQGR--ADGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     + E   AKA +F G        +N DD+    L A   A GI+ 
Sbjct: 211 ALFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGGRLLAGLRA-GIEA 268

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  +G    A          +    +     +  +V        V    +G     N L 
Sbjct: 269 VE-YGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG++ +       A+  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGVLLMAGVPWQDALARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    G+  AV G     G+        +  +       HV L+  +  +     
Sbjct: 384 ALAPITEARGGKLWAVFGC---GGDRDPGKRPQMGAIAERL-AQHVVLTSDNPRSEDPQL 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DV+VV  K 
Sbjct: 440 ILDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAGKG 483


>gi|325144962|gb|EGC67245.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240013]
          Length = 506

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 98/437 (22%), Positives = 158/437 (36%), Gaps = 54/437 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 98  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 145

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 146 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 198

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 199 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 253

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 254 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 309

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 310 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 369

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S            +  VL         ++    D  +VL+  
Sbjct: 370 ALLVDDYGHHPVEMAATLSAARGAYLE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 425

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 449 VKSSNSCGFYRLINLLL 465
              + S    R+   LL
Sbjct: 486 NMGAGSIN--RVPAALL 500


>gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
 gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
          Length = 493

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 181/474 (38%), Gaps = 51/474 (10%)

Query: 5   WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               D+L+ +      +    +   N IS +S+ I     F   KG  +D H+ +    +
Sbjct: 1   MKIKDILRELNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIVDDLYK 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120
           +GA + VV  ++         P   V D   A + +A     +    +I   +TG+ GKT
Sbjct: 61  EGANVFVVEREI------RKYPYIQVVDSRIAESIIASMFYSKPYEKLITFGVTGTNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFGI---- 164
           T+  +    + +     +  G+  N I                 +  M   ++ G     
Sbjct: 115 TSVHLFHHIMHNFGIKGSISGTVVNDIMGDKFYHPNTTPSAIEIMRNMHKTLENGGKYYG 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L + R     +R  I  IT I   HL      E    AK  I   L+  G   
Sbjct: 175 MEVSSHALSQYR--VESIRYDIVGITNITRDHLDFHETFENYKKAKFHILNLLKPNGIAV 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N+     ELL+   +      + SFG   ++D+ + +       ++ ++       +V 
Sbjct: 233 VNH-----ELLQEVKNKNKNIKLVSFGVDSSSDYVIHEITTNWSGTFFKLDTPYGEKKVA 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG + A N+ + +  ++ +  D+D  I +++ F   +GR +    A   G   ++D 
Sbjct: 288 SQLIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRFEIIPEAKKLGIEIVVD- 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +   P +++  I  L +++   +GR I V G     G+        + EV+S Y+   +
Sbjct: 347 -FAHTPDALEKVILSLRKLT---KGRLITVFGA---GGQSDIGKRPMMGEVVSKYSDISI 399

Query: 405 WLS----GFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    G   L +        +P S+ +   +  + +   I +    GDV+++
Sbjct: 400 ITTDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAI-TLANRGDVILI 452


>gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
 gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
          Length = 502

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 176/466 (37%), Gaps = 54/466 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
           +  ++G+++DSR++ P   F A++G  + G +F   A+ +GA  ++          +LS 
Sbjct: 25  ERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAAAILWQPTPGFDDQALSA 84

Query: 83  ------IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 +P   V  +   +            +  T+I +TG+ GKT+  + +  AL   +
Sbjct: 85  RCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVTGTDGKTSVSQFIAHALGRKE 144

Query: 135 KTYACIGSYNN----------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
                +G+                    I +   L ++       +     SH  + + L
Sbjct: 145 YRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRARHAQAVVIEVSSHALDQQRL 204

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V   +AV+T ++  HL         A AKA +F+   +  T+ +N DD F   L+A 
Sbjct: 205 A-GVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQR-PELHTVVVNVDDDFGRSLRAS 262

Query: 239 SHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                   +  +  +  + A  +  +    S+   + +   G    V    +G   A N+
Sbjct: 263 VRHA---RVIGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCRAAVRVGLLGRFNAANV 319

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  LG +  L   +  A++ LS+  P  GR +RY    ++G  T++ + Y   PA ++AA
Sbjct: 320 LAALGALLALDVPLREALQRLSLLQPVSGRMERY---GSEGRPTVVID-YAHTPAGLQAA 375

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
           ++ + +   H  GR   V G   +     +     LA      +   + ++  +      
Sbjct: 376 LAAMRE---HFAGRIWCVFGCGGDRDRGKRPLMGALAR----ASADRIIITNDNPRTENP 428

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  ++        V   E      +    +    D ++V  K 
Sbjct: 429 RRIIAEIQAGAGADSRVRVIEDRREAVIHSIRAAAPEDAILVAGKG 474


>gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 157/457 (34%), Gaps = 53/457 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IPVFG 87
           +  DSR + P + F A+ G   DG  FI  A + GAG++V   D   +  + +    V  
Sbjct: 19  VRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVCRADSEEAAAAATAGCRVVH 78

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL +L  A          I+ +TG+ GKTT   +L    +        +G+ + 
Sbjct: 79  HADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKLGVMGTVSY 138

Query: 146 HIG---------------VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                             V   LA M  D VD  + E+    + + R     V    A  
Sbjct: 139 RWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQR--VCGVPFSGAAF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL     +E    AKA +F  L     ++ +N DD++   L          T  
Sbjct: 197 TNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELC-----PTAL 251

Query: 249 SFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           SFG  K A              +    + + L+    E+    +G   A N+L    +  
Sbjct: 252 SFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVAL 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  D + A KAL  F    GR +R      QG    +D  Y   P +++  +  L    
Sbjct: 312 EMGIDPE-AFKALESFTGVSGRLERVE--NPQGLNVFVD--YAHTPDALENVLKALRDAG 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---- 416
                R I V G     G   +S    + E ++ ++   V  S         A+      
Sbjct: 367 FE---RVITVFGC---GGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLP 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L  +  V                L   D +++  K 
Sbjct: 421 GLADAKEVVVEVDRREATTRALGMLGKKDALLIAGKG 457


>gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya dadantii Ech703]
 gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703]
          Length = 494

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 166/478 (34%), Gaps = 48/478 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVANAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             +V   D  +  G+      +PV  +DD+   L+ L             +I +TG+ GK
Sbjct: 61  AAIVAQADAASPNGTCCELHGVPVVYLDDLNQRLSALAGRFYQHPSDTLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--------------DFGIF 165
           TTT ++L     ++ KT A +G+  N +   +T A                       + 
Sbjct: 121 TTTAQLLAQWTQALGKTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     V    A  T ++  HL     +    +AK  +F    + G   +
Sbjct: 181 AMEVSSHGLVQHRVEDVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSE-HRVGQAVI 239

Query: 226 NYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD        +   A+ +      G ++    +  +    +    +          + 
Sbjct: 240 NADDEVGRRWLERLPDAVAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDSSWGQGVID 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L++L  +  L   ++  +   S   P  G   R    +  G  T++ +
Sbjct: 300 SSLMGAFNVSNLLLSLATLLSLGYPLEQLVITGSTLQPVCG---RMEVFVADGRPTVVVD 356

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++ A+        H  G+   V G   +  +  +     +AE L+      V
Sbjct: 357 -YAHTPDALEKALEA---ARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQLA----DRV 408

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   L  +  V                    DVV+V  K 
Sbjct: 409 IVTDDNPRSEDPQAIVSDILSGLLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKG 466


>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
          Length = 480

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 166/458 (36%), Gaps = 55/458 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V  IS D+R I     F A KG  YD H+ I   +      V+V             
Sbjct: 21  EYEVADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLVTE------KEFDF 74

Query: 84  PVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           P   V +   AL+ ++        +   I +TG+ GKTTT  ++   +       A  G+
Sbjct: 75  PTIVVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTARFGT 134

Query: 143 YNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            N  I   L  +                    + +F + E+    L + R   + +  + 
Sbjct: 135 INYKIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEVSSHALDQDR--VYGINFNY 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A+ T ++  HL     +++  ++K+++F E L   G   +N DD + + L    + +   
Sbjct: 193 AIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYL--NGCGIVNIDDEYGKKLL---YLIKDN 247

Query: 246 TIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++  + N A+  +  +    +++ + + L G+ +      +G H   N++  +    
Sbjct: 248 EILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAH 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D D   +A+  F    G   R    +    +  ID  Y     +++   +VLS + 
Sbjct: 308 HLGIDHDRITRAIKTFSNVPG---RLEKLIYNNIYIFID--YAHTDDALE---NVLSSLR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           P  + R I + G     G+  +S    +A+V   Y+   V ++  +            + 
Sbjct: 360 PFRKRRIITLFGC---GGDRDKSKRPRMAKVAEKYS-DLVMVTSDNPRNEDPEKIIDGIL 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   V                    D+V++  K 
Sbjct: 416 KGFGDKSKVVVEPDRREAIKLALKEAEPEDIVLIAGKG 453


>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
 gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
          Length = 490

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 5 str. 513]
          Length = 488

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
 gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
          Length = 490

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 ARCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRMIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
 gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
          Length = 500

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 159/466 (34%), Gaps = 43/466 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G          V G +ID R +AP   F A +G +++  DFI  A++ GA  +V  ++  
Sbjct: 11  GLPEADAGDATVTGFAIDHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAK 70

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                        ++      +LA      +  TI+A+TG+ GKT+T EM         +
Sbjct: 71  VEGALH----IASEEPRRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWRMCGE 126

Query: 136 TYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLT 179
             A IG+             +                   V    +E     L + R   
Sbjct: 127 RAASIGTLGVTTPDGSVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRN-- 184

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAK 238
             +R      T  +  HL     ++    AK  +F+  +E+ G   +       E  +  
Sbjct: 185 EGLRVKAGAFTNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRA 244

Query: 239 SHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + ++     +  DF +L   +       ++V+  G+S +V    IG + A N L
Sbjct: 245 IEHALSRKLHVLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANAL 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           ++ G+     A       A+    P  GR +R     +     +    Y   P +++AAI
Sbjct: 305 VSAGLAIATGAAPAQVFDAIGRLQPVRGRLERACLTASGAPVYI---DYAHTPDALEAAI 361

Query: 358 SVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------S 407
           + L   +     G+ I V G     G+        + +V +  +   V +          
Sbjct: 362 AALRPHVDGEKGGKLIVVFGA---GGDRDTGKRAPMGKVAAD-SADLVIITDDNPRGEDP 417

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           G    A+ +    + HV                +   D+++V  K 
Sbjct: 418 GEIRAAVLEGAGGADHVRAIGGRREAIAAAIGQVGAHDIILVAGKG 463


>gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M644/93/1]
 gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M13/05/1]
          Length = 488

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 ARCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRMIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 572

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 151/389 (38%), Gaps = 34/389 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G    G V GI+ DSR++ P + + A+ G  + G DF   A   GA 
Sbjct: 66  LGELADRLGVEAAGT---GEVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAA 122

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV   +D    + +LA     R       + ITG+ GKTTT  
Sbjct: 123 AVLTDPAGAERAAATGLPVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTAY 182

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L +  +    IG+    IG     +    P   D       M   G     +   
Sbjct: 183 LVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           +AV   ++P H+   SG+E+   AKA++F   E++    +N+DD 
Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTP-ERSHRGVVNFDDE 301

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
           +   L  +S       + SF      +AD+     +   + S    V  +G+ +      
Sbjct: 302 YGRRLLTESGV----PVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 357

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  +++   D   A   ++      GR +R     + G   L    Y 
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERV----DAGQPYLAVVDYA 413

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
               ++++ +  L +++   EGR   VLG
Sbjct: 414 HKTDAVESVLRSLRKVT---EGRVHIVLG 439


>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
 gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
          Length = 488

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
 gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
          Length = 499

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 156/468 (33%), Gaps = 42/468 (8%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
            A Q    G  P   + G++ DSR++ P   F A+ G   DG  FI  A+ KGA  V+  
Sbjct: 17  AADQARPAGADPD--IAGLTADSRAVRPGFVFAALPGVKADGRAFIADALAKGAVAVLAP 74

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIAL 130
                  GS ++ +        A  ++A A    R   T++A+TG+ GKT+T +      
Sbjct: 75  EGTELPAGSTAL-LLTDPQPRLAFARMAAAFHGGRQPETVVAVTGTNGKTSTVQFAAQIW 133

Query: 131 SSIK-----------KTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIR 176
           + +                  G        P++L R      D       +  S  G  +
Sbjct: 134 ARMGLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHLAMEASSHGLEQ 193

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235
           F    V    A  T +   HL     +E    AKA +F+  L       LN D   F   
Sbjct: 194 FRLDGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAVLNADSDDFHFF 253

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  G + + S+G +  A+ ++   +  +    + + + G+ + V     G   A N
Sbjct: 254 ATICDERG-QRVLSYGLA-GAELRVTGVEPLAHGQRLSLTVLGRDVTVDLPLAGRFQAWN 311

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  LG+V     D   A+  L       GR +      N     +    +   P +++ 
Sbjct: 312 VLCALGLVIGSGGDATRALATLPALEGVPGRLQHVATHPNGATVYV---DFAHTPDALET 368

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------- 408
            +  L   +       + V G     G+  ++    +  + +      +           
Sbjct: 369 VLLALRSHAARD---LVTVFGC---GGDRDRTKRPVMGALAARLADRAIVTDDNPRTEDP 422

Query: 409 --FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  L  A    +  +                L  GDV+V+  K 
Sbjct: 423 AFVRSEVLAGATGELAGRLEEIGDRAEAIRTAVRRLQPGDVLVIAGKG 470


>gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
 gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
          Length = 493

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 175/486 (36%), Gaps = 59/486 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL            +     +++DSR+I   + F A+ G   DG  FI  A+ +
Sbjct: 1   MMLLRDLL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56

Query: 64  GAGLVVVNTDMVASIGS-------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           G   V+V+TD +   G        + I  + +   + A+  +           I+ ITG+
Sbjct: 57  GVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVD-----V 160
            GKT+T ++    ++ ++   A +G+  N +   L           TL R   +     V
Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFAGKGV 176

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLE 218
           +    E+    L + R     V   +AV T +   HL     +E  A+AK  +  F+ L 
Sbjct: 177 NTCAMEVSSHGLVQGR--VDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDALR 234

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQL 276
                 +N DD       ++   +  K ++ F    +  A F  +  +   +     +  
Sbjct: 235 HG---LVNLDDPVGAAWLSELANVPAK-MWGFSIEAHTEAAFYTKNAQFNDQGVQATLVW 290

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               +++    +G     N+L  L  + +   D+      +    P  GR +R+  A N 
Sbjct: 291 PEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTADN- 349

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              TL+ + Y   P +++ A++ L +   H  G    V G   +  +  +      AE  
Sbjct: 350 --ITLVVD-YAHTPDAIEQALNALRR---HCAGELWCVFGCGGDRDKGKRPLMGQAAEQC 403

Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      + ++  +  +         +   L                  + +    GDV+
Sbjct: 404 A----DRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVI 459

Query: 448 VV--KS 451
           ++  K 
Sbjct: 460 LLAGKG 465


>gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806]
          Length = 496

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 163/477 (34%), Gaps = 40/477 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL  I   S    P      + GIS +S +  P + F  + G   DG +F   A+
Sbjct: 1   MKLQELLANITPVSPISSPIASITEITGISTNSHACQPGDLFIGLPGTRVDGGEFWRSAL 60

Query: 62  QKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           + GA   +++    A         V  V D++ A   +A            +I +TG+ G
Sbjct: 61  ETGALAALISPAAAAKFPPPEDACVIVVADLVTATAAIAAKFYHYPALTLKLIGVTGTNG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDF 162
           KTTT  ++   LS      A  G+           A                      + 
Sbjct: 121 KTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEI 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L + R         + V T +   HL     +E+  +AKA++F      G 
Sbjct: 181 AVMEVSSHALAQGR--VQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGK 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD++ + L A   +L  + + ++      ADF  +     S      +      +
Sbjct: 239 AIINLDDAYGQRLAA---SLSPQQVLTYSVCDARADFYTKDLHYQSTGVEGVMVTPQGEI 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G +   N+L  +  V     D++T I  +  F    GR +R   A +Q    +
Sbjct: 296 AFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRMERVSIAPDQDISVI 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P S++   +VL    P   GR I V G   +     +     +A  L+   I
Sbjct: 356 VD--YAHTPDSLE---NVLKATRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAI 410

Query: 402 S-----HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         +  +   +P  I V               +   GD V++  K 
Sbjct: 411 VTSDNPRTEAPERILEDIIAGIPPEITVQVISDRALAIDTAIQTAQPGDGVIIAGKG 467


>gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus coahuilensis m4-4]
          Length = 443

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 164/422 (38%), Gaps = 43/422 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-PHY--DGHDFILHAV 61
                LL+ +  +++   P   ++ I +DSR +  Q  +  + G   +  D HD+I  A+
Sbjct: 1   MKLSHLLKDLTQYTLTGNPTIEISQIEMDSRRVKNQCMYICVPGIEGFLADRHDYIDQAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           + GA  ++V  ++        I V  V+DV  A +K+A      +  +  II +TG+ GK
Sbjct: 61  ENGAHAILVEKEVDVP---SHITVVRVEDVRLAFSKIATVFHNEAYKQLKIIGLTGTNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR-----MPVDVDFG 163
           TTT  ++   L+        +G+    I             P TL R     +  D+++ 
Sbjct: 118 TTTTFLVEKLLNDAGLKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNFAKMVEEDMEYC 177

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE----K 219
           + E+    +   R     V  +  ++T +   HL     ++    +K+++F  LE    +
Sbjct: 178 VMEVSSQGIDMGRM--KGVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLFTHLEEFEGE 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG- 278
                LN DD  +   K  S         S+G  +++  Q  +          +V  +  
Sbjct: 236 KPLAILNKDDDSYAYFKNASRG----ETISYGIDQDSIVQASELHFNKNGIHFKVTNKRS 291

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  E+    +G     N L  + +   +   ++ + ++L       GR + +  A    
Sbjct: 292 LEEQEIHLPLVGKFNVYNALAAITVAYTVGVTLEESKRSLENLSQIPGRMESFTTA---N 348

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+I + Y   P +++  +  L       +G+ I V+G      E  +     +A   S
Sbjct: 349 GVTVIVD-YAHTPDALENVLQSLKS---SLDGKLITVVGCGGNRDENKRPIMGKIAAECS 404

Query: 398 LY 399
            Y
Sbjct: 405 DY 406


>gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
 gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
          Length = 480

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 157/473 (33%), Gaps = 47/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+  + GH         + G++ DSR + P   F A+ G   DG  +I  A    
Sbjct: 1   MRLSDLIP-LDGHL-----DAEITGLTADSRQVKPGFLFAALPGETTDGRRYIDQA---- 50

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                    +  +  + ++PV   D+   AL  LA          I+ +TG+ GKT+   
Sbjct: 51  -IAAGAAAILAPTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGVTGTNGKTSVAR 109

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELG 168
            +    S+   +   +G+            R                          E+ 
Sbjct: 110 FVAQLWSAFGHSAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAAMGTTHLAMEVS 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
              L + R     VR   A  T I   HL      E   +AK  +    L +TG   +  
Sbjct: 170 SHGLAQHR--ADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLPETGQAVITT 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
           D +  E     +   G + + + G+      +L           + V ++    + V   
Sbjct: 228 DGAGAEGAIEAAQGAG-RRVLTVGRRGE-TLKLLSCVPHQGGLALTVSVEEGPAQSVALS 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N L+  G+V    A+ +  I+A++      GR +       +G        Y
Sbjct: 286 LIGDFQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGMASAFVDY 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++  A   L  I PH  G R+ V+  +   G+  ++    +    +      V +
Sbjct: 346 AHTPDAIATA---LRAIKPHVPGGRVVVV--IGAGGDRDRTKRPLMGR-AAAAGADLVIV 399

Query: 407 SGFHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +   A  RS     +         +        +L  GDV++V  K 
Sbjct: 400 TDDNPRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTGKG 452


>gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
 gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
          Length = 489

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 163/475 (34%), Gaps = 47/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL A+   ++   P+  ++ I+ DSR + P   F A+ G   DG  FI  AVQ GA 
Sbjct: 5   LSTLLAAVGLPALPGNPE--ISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+   D        + P+    +   AL  +A          ++AITG+ GKT+T + +
Sbjct: 63  AVLAPADTQWPTDVPACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFM 122

Query: 127 TIALSSIKKTYACIGSYN-------------NHIGVPLTLAR-----MPVDVDFGIFELG 168
               +      A IG+                    P+ LA                E  
Sbjct: 123 RQIWALQGFKAAAIGTLGLTGAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEAS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNY 227
              L + R     +    A  T +   HL     IE   +AK ++F+  L +      N 
Sbjct: 183 SHGLEQGRL--DGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D     L    + A                 +L  +        + ++  G++  V+   
Sbjct: 241 DMDAQTLQAICAIAARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPI 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+L+ + + +   A++   +  L       GR +R     N     +    Y 
Sbjct: 301 PGRFQADNVLLAVALAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACAYV---DYA 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++     +L+ + PH  G+ I VLG   +     +     + +           ++
Sbjct: 358 HTPDALA---RLLASLRPHARGKLIVVLGAGGDRDSGKRPL---MGQEAVK-GADIAIIT 410

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +K   P+++ +  ++    +   + S L   DV+VV  K 
Sbjct: 411 DDNPRTENPASIRADIKTGAPQALEI--ADRKQAIAEAL-SMLKADDVLVVAGKG 462


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/457 (21%), Positives = 173/457 (37%), Gaps = 52/457 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q   + + IDSR +   + F A+KG + DGH FI  AV  GA  +V  +    +   +++
Sbjct: 24  QSSFDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGPDIAL 83

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V D   AL +LA        SK  + A+TG+ GKTT   ++   L +       IG
Sbjct: 84  ----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFIG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFEL-------GMSHLGEIRFLTHLVRPH--------I 186
           +     G     A         ++EL       G SH   +   +H +           +
Sbjct: 140 TTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHCS-MELSSHAIDQDRIRMRDVDV 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL   S  E   +AK ++F+ L       +N DD   + + A +      +
Sbjct: 199 ALFTNLTRDHLDYHSTFELYFAAKKKLFDELPDGAVAVVNVDDPRGKGIAADTTG----S 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG   ++D       + +E S +++ + G          G + A N+         L
Sbjct: 255 VITFGSDDHSDVSFSI--EGNELSGLDLTIDG--HRRRFQLAGTYNASNLAAAYAASRAL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS-VLSQISP 365
                 +I ALS   P EGR +R +    +G   +I + Y   P ++K  +   L  + P
Sbjct: 311 GLSALESIDALSSSPPVEGRFERMQ---FEGGTMVIVD-YAHTPDALKNVLEATLESMRP 366

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
                   + G   +     ++    +AE L+      V ++  +            ++ 
Sbjct: 367 GST--LWCIFGCGGDRDPGKRAQMGAIAERLAH----KVIVTSDNPRTEDPKLILDDIRQ 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L +     +            +S+V GD +V+  K 
Sbjct: 421 GLLKPEDAFWEIDRRDAISRAAASMVSGDTLVLAGKG 457


>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc punctiforme PCC 73102]
 gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
           73102]
          Length = 500

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 170/482 (35%), Gaps = 49/482 (10%)

Query: 5   WTFHDLLQAIQGH----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               +LL A+       S   +    V G+  +S +    + F  + G   DG +F   A
Sbjct: 1   MKLRELLTAVDSVEQLASHPTLEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFWQSA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSV 117
           +  GA   +V+ +        +   V    ++  A  ++A         K  ++ +TG+ 
Sbjct: 61  IASGAVAAIVSPEAAQKNPPTNEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVD 161
           GKTTT  ++   L       A +G+           A                      +
Sbjct: 121 GKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEAVNAGSE 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           FG+ E+    L + R L    +  +AV + +   HL     +E+  +AKA +F      G
Sbjct: 181 FGVMEVSSHALAQGRVL--GCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPDYLKG 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKS 280
              +N DDS+ + L A   +L  + ++S+  + N AD  +             +      
Sbjct: 239 RAIINADDSYGKRLIA---SLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPKGD 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      +G +  +N+L  +G    L  D+      +  F    GR +R +   +Q    
Sbjct: 296 VAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDISV 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   P S++   ++L    P   G+ I V G     G+  ++    +  + +   
Sbjct: 356 IVD--YAHTPDSLE---NLLKAARPFIPGKVICVFGC---GGDRDRTKRPIMGRIAAELA 407

Query: 401 ISHVWLSG----FHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV-- 449
              V  S      +   + + +   I          +    +   I  +   GD V++  
Sbjct: 408 DVAVVTSDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQA-QPGDGVLLAG 466

Query: 450 KS 451
           K 
Sbjct: 467 KG 468


>gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 508

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/469 (20%), Positives = 161/469 (34%), Gaps = 51/469 (10%)

Query: 11  LQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            + + G  +   G      V G+  DSR + P   F  ++G   DGH  +  A   GA  
Sbjct: 15  ARTVPGSPVTRAGGADDLTVRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMA 74

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V+  +  S+  L +P   V   LG L  L +A        ++ +TGS GKTTT  ++ 
Sbjct: 75  LLVDRPVETSLPQLCVP--SVRAQLGPLGAL-LAGDPARALGLVGVTGSNGKTTTSALVR 131

Query: 128 IALSSIKKTYACIGSYNNHI-----GVPLTLARMPVDVD-----------FGIFELGMSH 171
             L +       +G+    +        LT    P   +             + E     
Sbjct: 132 GVLEAAGTCTGVVGTLGAQVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIA 191

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDS 230
           L   R     +   +AV T     HL +   +E+  ++KA +FE G    G +    DD 
Sbjct: 192 LDMGRM--DGLAFEVAVFTGFEEDHLDHHGTVEQYWASKARLFEPGRTAAGVVVT--DDP 247

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   L  ++       +   G   +AD ++  W+  +  + + +        V    +G 
Sbjct: 248 WGRRLADQAAV----RVTRVGSGADADVRVLGWRTGAAGTEVLLGDDAGGHRVRSPLVGR 303

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+        +L    D     L+   P  GR       L      ++   Y   P
Sbjct: 304 VHVTNLAAAWATGRVLGVPPDRIAAGLAAVAPPRGRN----TVLGGSGRPVVVVDYAHTP 359

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            ++ AA+  +  ++    GR   V+G     G   +     L E  S      VWL+   
Sbjct: 360 RALAAAVDTVRDLTG-PGGRVHLVVGA---RGRRDRYKRQGLGE--SARAADCVWLTNEG 413

Query: 408 --GFHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G    A++  L   +      V               +    DVV+V
Sbjct: 414 SHGEDPAAIRAELRLGLLGTPAAVRTVPDRREAITAAVRAAGPADVVLV 462


>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 166/483 (34%), Gaps = 49/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+ +I+   I         V  I  DSR + P   F AI+G + DGH +I  AV+
Sbjct: 1   MRLKDLINSIELVEIAGELHEDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQYINQAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
             A  +V      +           V D   AL K+A      +  +  +I +TG+ GKT
Sbjct: 61  ADAMAIVCEEIPKSWSSHQL--FLKVWDSREALAKIAKRFYENASDELKVIGVTGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGI 164
           TT  M+   L + +     IG+    IG  L                    +       +
Sbjct: 119 TTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDRTTPDALELHQLFHKMLEAGCRAVV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R  T  +R  IAV T +   HL     +   A AK  +F+ L ++    
Sbjct: 179 MEVSSHALALKR--TAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDNLSESAFAV 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGK 279
           +N DD + E +     A  ++      + K       D   + +      +   +     
Sbjct: 237 INADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGTSAIIADDKN 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           SM      +G     N +           D    I+ L    P  GR ++     ++   
Sbjct: 297 SMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQVWSKDHRCAI 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y+  P +++ A+  +  + P   GR I + G   +  +  +     +AE     
Sbjct: 357 V----DYSHTPDALENALQTICLVKPE-NGRIITLFGCGGDRDKEKRPLMGKIAE----D 407

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           N   + ++  +  +         ++  + +  + +     +       + L  GDV ++ 
Sbjct: 408 NSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVALIA 467

Query: 450 -KS 451
            K 
Sbjct: 468 GKG 470


>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 534

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 170/483 (35%), Gaps = 48/483 (9%)

Query: 7   FHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             D+L+ I G ++         V G+ +DSR +   + F A  G    G  FI  AV +G
Sbjct: 20  LGDVLREIPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIPEAVARG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+V     ++  +L      V DV    A     V         ++ ITG+ GKTTT
Sbjct: 80  ARAVIVARG--SAADTLGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVGITGTNGKTTT 137

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++   +         +G+     G     A                         + E
Sbjct: 138 AHLVQACIDRCGGQAGIVGTLGYRFGDLDVHASHTSPEADELARVAAAMVARGATHLVME 197

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L         VR  IAV T +   HL     +E  A+AKA +F  L   G   +N
Sbjct: 198 VSSIALA--AKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARLFVDLGP-GAAVIN 254

Query: 227 YDDSFFELLKAKSHALGIK-----TIYSFGKS-----KNADFQLRKWKQCSEQSWMEVQL 276
            DD F   L       G+      T+  +          A+    +    +  +++  + 
Sbjct: 255 VDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVELAHSASGTFIRART 314

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               + +  H +G H A N+L  L +  +L  DV  A  ALS      GR +R       
Sbjct: 315 PAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPIQVAGRLERCDAPGAD 374

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEV 395
               L+D  Y   P ++     VL+ +   G GR + V G   +   L +      +  V
Sbjct: 375 DVIVLVD--YAHTPDALA---RVLASVRALGGGRVLCVFGCGGDRDPLKRPQMGEAVGRV 429

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSL--VDGDVVVV- 449
             +  +++         A+ DA+   +          +D      ++ L    GDVV++ 
Sbjct: 430 ADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAVLDAEPGDVVLIA 489

Query: 450 -KS 451
            K 
Sbjct: 490 GKG 492


>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
           RKU-1]
 gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga petrophila RKU-1]
          Length = 490

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 174/483 (36%), Gaps = 55/483 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   +G  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS--------- 116
             VVV  ++      L  P   V D      K+A          ++    +         
Sbjct: 64  VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118

Query: 117 ----VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGM 169
                  T+  E  ++  +++K+        +      +T+     +   G    F L +
Sbjct: 119 MMIYHMLTSLGEKGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN  +
Sbjct: 179 SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN--E 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           S  +    KS         +FG SKNAD++L   +   E +   ++     + V    IG
Sbjct: 237 SLADTFNRKSRK------ITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N    +  +  L  D      +L  F   EGR +  R A   G   ++D  +  +
Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHS 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
           P +++  +  + +IS   +GR I V G         +    ++A  L+      V L+  
Sbjct: 349 PDALEKLLKNVRKIS---QGRVIVVFGAGGNSDRGKRPMMSEVASKLA----DVVILTTD 401

Query: 408 ---GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              G     + + L + I          +  + +   + +    GD VV+ +      Y+
Sbjct: 402 DPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETAL-TIANRGDSVVI-AGRGHERYQ 459

Query: 460 LIN 462
           +I+
Sbjct: 460 IID 462


>gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 495

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 160/469 (34%), Gaps = 51/469 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + +         +  V G+S+ S  + P + + A+ G    G +F+  AV++GA 
Sbjct: 15  LAALARLLSVPVDAEPGRVEVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+ ++  V +     +P     D   A      AV      + ++I ITG+ GKT+T  
Sbjct: 75  AVLSDSWGVEAAVEHGLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELG 168
           ++   L +  +    IG+    IG    ++                 +   V   + E+ 
Sbjct: 135 LVEAGLKAAGRVTGLIGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEVS 194

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     +   +   T     HL     ++E  +AKA++F+G  +     +N D
Sbjct: 195 SHALTLHR--AEGISFAVGGFTMFGLDHLDFHPTVDEYFAAKAKLFDG--RCRVEVVNAD 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D++ + L             ++     NA + +            EV             
Sbjct: 251 DAWAKRLV-------TPDTVTYSLVDANATWSVDSITGSGFDQSFEVTSPHGRHHGSVRL 303

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L+  G ++ +   V+TAI  ++      GR +                 Y 
Sbjct: 304 PGRHNIANALLAYGCLTAVGVPVETAIAGVADCAGVPGRMELVSEDNPVHGVV----DYA 359

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++ A +  L    P   G  IAV+G   +     ++   D     +      V ++
Sbjct: 360 HKPDAITAVLEALR---PITSGSLIAVIGAGGDRDPSKRTLMGD----AAARAADLVIVT 412

Query: 408 GFHVLALKDALPRSI---------HVHYSETMDGLFLFIQSSLVDGDVV 447
             +      A  R+          H+  ++    +   +  +   GD +
Sbjct: 413 DDNPRTEDPAAVRAGVLAGVGDRPHLEVADRATAIDEAVARA-KPGDTI 460


>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
 gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
          Length = 490

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella canis ATCC 23365]
 gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 3 str. 686]
 gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
           23365]
          Length = 488

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
 gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
          Length = 490

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis B2/94]
 gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
          Length = 488

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 493

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 168/477 (35%), Gaps = 51/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++       G + +  +  +  D+  I P +AF A KG +  G  +I  A++KG
Sbjct: 1   MQIGELIKDWPCTMKGSI-RVEIKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV+ +   +   L +P+  V + L   A     +        T+IA+TG+ GKTT 
Sbjct: 60  AAAIVVDDENYFNEADLPVPIIWVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-------------------DVDFG 163
              +   L+ + K    IG+    I        M                     DV + 
Sbjct: 120 THFIGQILNQLDKRAMVIGTNGVFIDREKCYPEMEALTTLQAKNIQFLFKEAIRLDVPYV 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     L E   L H     I +   +   H+ +    E    +K  +    +K    
Sbjct: 180 VLEASSIGL-EKHRLDH-CDIDIGIFLNVTEDHIEDHGSFERYKLSKQILSTLAKKN--- 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DDS    +   +     K I+ FGK  + D+  +        +   +Q + +   V
Sbjct: 235 IINSDDSVCRSIGLATKG---KRIF-FGKGSHVDYFFQTLVDGPASTTCCIQHKKEKHIV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +   N+L  +  ++ L   +      +      EG   R+    NQ   +++ 
Sbjct: 291 NIPLVGDYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEG---RFEHVENQLGLSIVV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P +MK  +  L +   H + R I +       G   ++    +  + S+Y   +
Sbjct: 348 D-YAHTPDAMKMILQTLKK---HTKRRLIVMFSC---GGNRDKAKRPKMGMIASIY-ADY 399

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + L+  +            +++    +                 +    GD +V+  
Sbjct: 400 IILTTDNARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLG 456


>gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 508

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 155/461 (33%), Gaps = 49/461 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR IA  + F A  G   DG  +I +A+++GA  V+             +    +D
Sbjct: 25  LASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEWDVAHLAID 84

Query: 90  DVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+     ++A A           +AITG+ GKT+  + L  ALS + +  A IG+    I
Sbjct: 85  DLKEHAGEIAAAYYAHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIGTLGVGI 144

Query: 148 GVP----------------LTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAV 188
                              + L R  V+V         +  S +G  +     +   +A+
Sbjct: 145 FTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSGMHFDMAL 204

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-I 247
            T     HL     +     AKA +F+         +N DD+    L  +  +      I
Sbjct: 205 FTNFTRDHLDYHGDMAAYEEAKAMLFDW-PGLQHAVINLDDAMGVRLVQRLQSRQADVGI 263

Query: 248 YSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  S       A  +    +     +  +++    + +V    +G     N+L  +GI
Sbjct: 264 TGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQFNVSNVLGIIGI 323

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +  A+ A+       GR +     L  G   L+   Y   P +++  ++ L  
Sbjct: 324 LLAKGIALQDAVNAVEALTAVPGRMQ----QLGGGEAPLVVIDYAHTPDALEKTLATLRS 379

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413
           ++    G    V G     G+        + +V       H+ ++  +            
Sbjct: 380 VANDRGGELWCVFGC---GGDRDPGKRPQMGKV--SMAADHIVVTTDNPRNEEPANIIGD 434

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +             E      L+        DV+++  K 
Sbjct: 435 IVAGITAPKNAPQIIEDRASAILWAGRHAARQDVILLAGKG 475


>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
           melitensis biovar Abortus 2308]
 gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
          Length = 488

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/458 (20%), Positives = 171/458 (37%), Gaps = 43/458 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           + P   GR I V G     G+  +     + E+ S      V ++  +  +   A  RS 
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 423 HVHYS-------ETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +       +  + +F  + S +  GD +VV  K 
Sbjct: 419 IMAVATGATEIGDRREAIFTAV-SMMQPGDTLVVAGKG 455


>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
 gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
          Length = 490

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
 gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
          Length = 499

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 26  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 84  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 143

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 144 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 202 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 261 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 320 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 374 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 429

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 430 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis ATCC 23445]
 gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
 gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
           23445]
 gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
          Length = 488

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 509

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 160/464 (34%), Gaps = 52/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSRSI   + FFA  G   DG  FI  A+++GA  VV   D +   G+   P+  V 
Sbjct: 21  LSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAADFPLLAVT 80

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +     ++A     ++      +AITG+ GKT+  + L  ALS +    A IG+    +
Sbjct: 81  GLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSRLTGPCAVIGTLGTGL 140

Query: 148 GVPLTLARMPV-------------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               ++ R+                             +  S +G  +   + +   +A+
Sbjct: 141 FRRGSVDRLAETGYTTPDAILLQRRLRDLRRAGASALAIEASSIGLDQGRLNGLPVQVAL 200

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA---KSHALGIK 245
            T     HL     +    +AK  +F+         LN DD+    L A   ++      
Sbjct: 201 FTNFTRDHLDYHGDMATYEAAKTALFDQ-PGLQHAVLNLDDAMGLRLLAHLQRTAPQLAL 259

Query: 246 TIYSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           T Y+    + A     +    +     +  ++     +M V    +G     N+L  +G+
Sbjct: 260 TGYTLTDLQPAGITVLRAGDIRSSHAGTSFQLMTAAGTMLVRTRLVGSFNVSNVLGIIGV 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +   + A+       GR +++          L+   Y   P ++   ++ L Q
Sbjct: 320 LLAQDCPLRAIVDAIETLTAVPGRMQQF----GGQDAPLVVIDYAHTPDALDKTLAALQQ 375

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPR 420
           ++    G+   V G     G+        +   L+      + ++            + +
Sbjct: 376 VAAQRHGKLWCVFGC---GGDRDPGKRPQMG--LAALAADEIIITSDNPRSEVAAAIIAQ 430

Query: 421 SIHVH-----------YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++                E      L+      + DV+++  K 
Sbjct: 431 TLQGTDERADSHAVPLVIEDRAAAILWAVRHAANADVILLAGKG 474


>gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
 gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
          Length = 530

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 161/467 (34%), Gaps = 53/467 (11%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--- 81
           GF   +  DSR+I   + F AI G   DG  +I  A+++GA LVV   + +   G +   
Sbjct: 28  GFCGDLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFA 87

Query: 82  ----SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               ++ +     +   L  L        +   T++ ITG+ GKTTT ++L   LS+ +K
Sbjct: 88  SSDNTVAIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQMLSAYQK 147

Query: 136 TYACIGSY------NNHIGVPLT--------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T A IG+       N H     T        L +   D  F    + +S     +     
Sbjct: 148 TCAVIGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQA 207

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               IA+ T ++  HL     +     +K +IF   +      +N+DD   +      + 
Sbjct: 208 DLFDIAIFTNLSRDHLDYHGSMASYGESKKQIFSA-DSNQVAVVNFDDQQAKKWLE--NW 264

Query: 242 LGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              +T++ + +  +          +            +      +++    +G     N+
Sbjct: 265 PKQQTLWLYSRETDNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNL 324

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + ++ I    +      ++      G   R      +   T + + Y   P +++ A
Sbjct: 325 LAAISVLLIQGIPLSEIPHLVTQVSAIAG---RMEATSAKNLATAVVD-YAHTPDALEKA 380

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    Q   H  G    V G     G+  +     +A+    Y    V  +         
Sbjct: 381 LQACRQ---HCAGELYVVFGC---GGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQ 434

Query: 417 ALPRSIHVHY-SETMDGLFLFIQSS---------LVDGDVVVV--KS 451
            +   I   +     + + + ++              GD+V++  K 
Sbjct: 435 LIANDIVAGFTCPDAEQISIILEREQAVLKTLNKAKPGDIVLLAGKG 481


>gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           AB900]
          Length = 499

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/467 (18%), Positives = 161/467 (34%), Gaps = 61/467 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           P+   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PRQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             +        DV   + +       ++       IIA+TG+ GKTT   ++   +SS +
Sbjct: 76  EWVC------PDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRLIAELISSQQ 129

Query: 135 KTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N I   LT +                       F   E     L + R  
Sbjct: 130 QRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+   
Sbjct: 189 -NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF-NSLKVAVINLDDAQADLMINS 246

Query: 239 SHALGIK-TIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +     +  I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N+
Sbjct: 247 AQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENL 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L        D+   +  +       GR +  R         L    Y   P ++   
Sbjct: 307 IAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL--- 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           I VL  +  H   +  AV G   +     +          +L   + V L+         
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDP 414

Query: 412 LALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   + + I      +H          F+      GD+VV+  K 
Sbjct: 415 EQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
 gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
          Length = 499

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 161/467 (34%), Gaps = 61/467 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           P+    G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PRQPFYGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             +        DV   + +       ++       IIA+TG+ GKTT   ++   +SS +
Sbjct: 76  EWVC------PDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELISSQQ 129

Query: 135 KTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N I   LT +                       F   E     L + R  
Sbjct: 130 QRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KA 237
            +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+ K+
Sbjct: 189 -NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF-NSLKVAVINLDDAHADLMIKS 246

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +      I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N+
Sbjct: 247 AQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLLGHFNVENL 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L        D+   +  +       GR +  R         L    Y   P ++   
Sbjct: 307 IAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL--- 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           I VL  +  H   +  AV G   +     +          +L   + V L+         
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDP 414

Query: 412 LALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   + + I      +H          F+      GD+VV+  K 
Sbjct: 415 EQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia
           minopimelate ligase [Stenotrophomonas maltophilia K279a]
          Length = 502

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 154/480 (32%), Gaps = 47/480 (9%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+P      LL   A+ GH         + G+ +DSR++ P  AF AI G    G  F+ 
Sbjct: 1   MSPSMLLSQLLPDVALAGH------DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGS 116
            A   GA +++       +          V  +   +  +             ++ +TG+
Sbjct: 55  QARAAGASVIL-FEPPAPAELPAPADAIAVPGLRARMGAMADQFHGAPSRSMAMVGVTGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDF 162
            GKT+T ++L  A   +      IG+    +   +               L     D   
Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S     +     V   +AV T +   HL     +    +AKA +F        
Sbjct: 174 RAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHR-PGLKA 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+F   L A   A       S   + +A  +    +        E+ + G+   
Sbjct: 233 AVINLDDAFGGQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAA 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L   G +      +    + LS   P  GR  R      +     +
Sbjct: 293 VQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRL---GGEDGLPTV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+  L     H +G    V G   E     +     +AE L+    +
Sbjct: 350 VVDYAHTPDALEQALDSLHG---HLQGTLFCVFGCGGERDTGKRPQMATIAERLA----N 402

Query: 403 HVWLS-----GFHVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++     G     +          +  V    +              GD++++  K 
Sbjct: 403 KVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKG 462


>gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 431

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 152/413 (36%), Gaps = 37/413 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G      + GI+ DSR++ P + + A+ G  + G DF   A   GA 
Sbjct: 32  LGELAARLGVQTPGA---AEITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAA 88

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV   ++  G + +L   +          I ITG+ GKTTT  
Sbjct: 89  AVLTDESGAERAAATGLPVLVTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTTTAY 148

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRF----- 177
           ++   L +  ++   IG+    IG     +    P   D       M   G         
Sbjct: 149 LVEGGLKAAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAMEVS 208

Query: 178 -------LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          IAV   ++P H+   S +E+   AKA++F    ++    +N+DD 
Sbjct: 209 SHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFTP-RRSREAVVNFDDE 267

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
           +   L  ++       + +F      +AD++    +  +  S    V   G+ +      
Sbjct: 268 YGRRLVDEATV----PVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPL 323

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  +++   D  TA   ++      GR +R     + G   L    Y 
Sbjct: 324 PGPFNVANTLAAVVTLAVAGLDPQTAADGIAAVPGVPGRLERV----DAGQPYLAVVDYA 379

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               ++++ +  L +++   +G+   VLG     G+  ++    +    +   
Sbjct: 380 HKTDAVESVLRSLRKVT---KGKVHIVLGC---GGDRDRTKRGPMGAAAARNG 426


>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
 gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
          Length = 490

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 515

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 169/487 (34%), Gaps = 59/487 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLG--LPAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +      + +  +P   VDD    + +LAV            I ITG+ GKTTT  
Sbjct: 75  AVLTDPSGAERVAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSI--------KKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG- 173
           ++   L +          +    IG+    IG     +    P   D       M   G 
Sbjct: 135 LVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRERGT 194

Query: 174 ---EIRFLTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               +   +H +           IAV T ++P H+   S +E+   AKA++F   E++  
Sbjct: 195 DAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFTP-ERSRL 253

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGK 279
             +N DD +   L  ++       + ++      +AD++    +     S   V   + +
Sbjct: 254 GVVNVDDEYGRRLAKEAGV----PVVTYSAEGHPDADWRTEDVRVGPLDSSFTVIGPEDQ 309

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +       G     N L  +  ++    D   A   ++      GR +R     + G  
Sbjct: 310 RVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERV----DAGQP 365

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L    Y     ++++ +  L +++   EGR   VLG     G+   +    +    +  
Sbjct: 366 YLAVVDYAHKTDAVESVLRTLRRVT---EGRVHVVLGC---GGDRDITKRAPMGAAAARL 419

Query: 400 NISHVWLSG----FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDV 446
             + V  S        LA+         ++P      V   E          +    GD 
Sbjct: 420 ADTAVLTSDNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDT 479

Query: 447 VVV--KS 451
           V+V  K 
Sbjct: 480 VLVAGKG 486


>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
 gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
          Length = 490

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 175/483 (36%), Gaps = 55/483 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   +G  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS--------- 116
             VVV  ++      L  P   V D      K+A          ++    +         
Sbjct: 64  VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118

Query: 117 ----VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGM 169
                  T+  E  ++  +++K+        +      +T+     +   G    F L +
Sbjct: 119 MMIYHMLTSLGERGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN   
Sbjct: 179 SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--- 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              E L    +    K   +FG SKNAD++L   +   E +   ++     ++V    IG
Sbjct: 236 ---ESLADAFNRKSRK--ITFGTSKNADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N    +  +  L  D      +L  F   EGR +  R A   G   ++D  +  +
Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHS 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
           P +++  +  + +IS   +GR I V G         +    ++A  L+    + V L+  
Sbjct: 349 PDALEKLLKNVRKIS---QGRVIVVFGAGGNSDRGKRPMMSEVASKLA----NVVILTTD 401

Query: 408 ---GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              G     + + L + I          +  + +   + +    GD VV+ +      Y+
Sbjct: 402 DPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETAL-TIANRGDSVVI-AGRGHERYQ 459

Query: 460 LIN 462
           +I+
Sbjct: 460 IID 462


>gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 497

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 165/480 (34%), Gaps = 53/480 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ ++   +       +  I+ DSR       FF IKG   DGH +     +K
Sbjct: 8   MKKLVDLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEVAEK 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA +++V   +        + V  V++   A+  ++ A       K   I ITG+ GKTT
Sbjct: 68  GAAVLIVQDKVEVPEE---VTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166
           T  ++   L +       IG+    IG               V    A M       +  
Sbjct: 125 TTYLVKSILENAGYKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDSVV- 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           + +S  G +   T   +  I + T I P H+         +    KA +F+  +      
Sbjct: 184 MEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLRCKALLFKQCK---VGI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SM 281
            N D    + +           + +FG S+ AD +    K  + +  + +    K   + 
Sbjct: 241 FNADAEHLDEILEGHTC----EVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNF 296

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G     N L  + +        +   KAL     K     R         FTL
Sbjct: 297 PVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKVKG----RIEMVKVSDEFTL 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--------EMGELSQSFHIDLA 393
           + + Y  N  S+++ ++ L +  P+   R + + G           EMGE+S     DL 
Sbjct: 353 MID-YAHNAMSLESLLTTLKEYKPN---RLVCLFGCGGNRSKLRRYEMGEVSGKL-ADLT 407

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + S              + +        +V   +  + +   I      GD+VV+  K 
Sbjct: 408 IITSDNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHG-QPGDIVVLAGKG 466


>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. 83/13]
 gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
 gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
          Length = 488

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 419

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 147/400 (36%), Gaps = 34/400 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+ +GA  V         +    +
Sbjct: 15  DPMIRELTLDSRNVRPGDLFLAVPGAKVDGRGHIADALARGAAAVAYEEQGANVLPLTDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +          +  ++ +TG+ GKT+  ++L  AL  + K    IG
Sbjct: 75  PLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQALELLGKRCGLIG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R+       +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHALEQGR--VAALAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHA 241
           IAV+T ++  HL     ++   +AKA++F          +N DD F   L      ++ A
Sbjct: 193 IAVMTNLSRDHLDYHGSMQAYEAAKAKLFAW-PSLRCQVVNLDDEFGRRLAQAFADRAPA 251

Query: 242 LGIK-TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             I+  + S+  ++++AD    K           +        +    +G     NML  
Sbjct: 252 DPIESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERILRSQLLGRFNLSNMLAA 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  +  +   +D  +  +       GR +R       G   L+   Y   P +++  +  
Sbjct: 312 VATLLAMDFALDEILSVIPKLQGPVGRMQRL----GGGAKPLVVVDYAHTPDALEKVLEA 367

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           L    PH  G+ + + G   +     +    ++AE L+  
Sbjct: 368 LR---PHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADR 404


>gi|71282429|ref|YP_271112.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
 gi|109892700|sp|Q47VR0|MURC_COLP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71148169|gb|AAZ28642.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
          Length = 503

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/433 (21%), Positives = 173/433 (39%), Gaps = 51/433 (11%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           A+      GH    + VQ  A ++VV+T + +    L       IPV    ++L  L + 
Sbjct: 71  ALGATIVIGHQ-AENVVQ--ASVIVVSTAINSENPELVKAKELRIPVVRRAEMLAELMRF 127

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARM 156
                       IAI G+ GKTTT  ++    +   +  T+   G  N+      T AR+
Sbjct: 128 R---------HGIAIAGTHGKTTTTSLIASIFAQGKLDPTFVIGGLLNS----AGTNARL 174

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFE 215
                + + E   S    +      ++P ++VIT I   H+       E++     E   
Sbjct: 175 GSS-RYLVAEADESDASFLH-----LQPMVSVITNIDADHMETYQGDFEKLKDTYIEFLH 228

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  D+     L  +      + + ++G SK+AD +   ++Q    S   V+
Sbjct: 229 NLPFYGLAVVCIDNPVVRELLPRIS----RQVITYGFSKDADVRAVNYQQNGAVSHFTVE 284

Query: 276 LQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           ++G+  +E+  +  G H   N L  + +      + +   KAL+ F     R ++     
Sbjct: 285 VEGQEPLEMSVNLPGQHNVLNALAGVAVAKDEGVNDEAICKALTEFEGIGRRFEKLTDFS 344

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 ++ + Y  +P+ +KA I  + Q  P  + R + V          ++  + D  E
Sbjct: 345 TAAGDMVLVDDYGHHPSEVKATILAMRQGWP--DKRLVMVF--QPHRYSRTRDLYEDFVE 400

Query: 395 VLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVD 443
           VLS  +   +  V+ +G   ++  D  +L RSI +       Y   +D L   + + L D
Sbjct: 401 VLSEVDCLFLLDVYAAGETPISSADSKSLARSIRLRGQIEPVYVSDVDKLPQLLATQLQD 460

Query: 444 GDVVVVKSSNSCG 456
            D+V+ + + S G
Sbjct: 461 NDMVITQGAGSIG 473


>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
 gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
          Length = 484

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 165/474 (34%), Gaps = 51/474 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       V+ I  DSR++  +  F  I G + DGHDFI   + +G
Sbjct: 1   MKLKQLLNEMNYQVLQGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVINRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A ++VV  D+    G   I    V +   AL  L+ A       + T+I ITG+ GKTTT
Sbjct: 61  ARVIVVEHDVPFQEG---ITYIRVKEARLALALLSCAFFEHPSRQMTVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELG 168
             M+   L    K    IG+  + +                   L R  V+       + 
Sbjct: 118 SYMMESILEKANKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQMVECGCEYCVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      +     V T ++P H+        E   + K  +F+  +       N
Sbjct: 178 VSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEHEHHSFEHYMACKKMLFQMCK---VGIFN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD  +E +   +       I ++   + +D +  +         + V  Q         
Sbjct: 235 RDDEHYEDMIKGAKC----DIKTYSLHQQSDLKASQIHLSQGTGTLGVSFQTSGLIDANF 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G+    N L+ + +  +L  + +   +A         RG+     + Q +  +ID
Sbjct: 291 ETDIPGHFSVYNSLVAIILCHLLGIETNYIKEA---LKKVRVRGRVEIVPVGQKYTVMID 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S ++ +  +    PH   R + V G     G        D+ E+++ Y    
Sbjct: 348 --YAHNALSFESILQTIMDYQPH---RILCVYGA---GGHRDVKRRYDVGEIVAKYKAFS 399

Query: 404 VWLS----GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448
           +  +    G +V  + + +   IH         E       +        DV++
Sbjct: 400 ILTADNPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVIL 453


>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
          Length = 490

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 293

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 117/302 (38%), Gaps = 35/302 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     ++E A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD+    ++  + A     + +FG  + ADF+    +  S  S  ++      
Sbjct: 234 KMAVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGE 289

Query: 281 ME 282
             
Sbjct: 290 FT 291


>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
 gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
          Length = 499

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/458 (20%), Positives = 171/458 (37%), Gaps = 43/458 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 26  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 84  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 143

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 144 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 202 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 261 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 320 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           + P   GR I V G     G+  +     + E+ S      V ++  +  +   A  RS 
Sbjct: 374 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 429

Query: 423 HVHYS-------ETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +       +  + +F  + S +  GD +VV  K 
Sbjct: 430 IMAVATGATEIGDRREAIFTAV-SMMQPGDTLVVAGKG 466


>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
 gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
          Length = 490

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/458 (20%), Positives = 171/458 (37%), Gaps = 43/458 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           + P   GR I V G     G+  +     + E+ S      V ++  +  +   A  RS 
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 423 HVHYS-------ETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +       +  + +F  + S +  GD +VV  K 
Sbjct: 421 IMAVATGATEIGDRREAIFTAV-SMMQPGDTLVVAGKG 457


>gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 481

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 173/472 (36%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L A             V GI+  S ++     F A+ G   DG  ++  A+Q+G
Sbjct: 1   MRLSDVLPA-GIEPPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V+      ++ +  + +  VD+   AL K+A     R     +A+TG+ GKT+  +
Sbjct: 60  ASAIVIGKGKGVTVPA-GVALIEVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVAD 118

Query: 125 MLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELG 168
                 +S+ +  A +G+                 + + +  TLA +  + V    FE  
Sbjct: 119 FTRQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLADEGVTHLAFEAS 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNY 227
              L + R     V    A  T +   H+      E   +AK  +F E L+      +N 
Sbjct: 179 SHGLDQNRL--DGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINT 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D +    + A + A G++ + + G+S +   +     +   Q  + +   G+S +V    
Sbjct: 237 DGARSADVAAAAKARGLR-VMTVGQSGD-TLKRTSLTRDGFQQRIGILFDGRSFDVRLPL 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +  +N L+  G+        D  + AL       GR +        G   ++D  Y 
Sbjct: 295 VGAYQVENALVAAGLAIATGEKADAVLAALESLKGVPGRLEI--IGERNGGLAVVD--YA 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++ AA+       P   GR I+V G     G+  +     +   +S+       ++
Sbjct: 351 HKPEALAAALDACR---PFVTGRLISVFGC---GGDRDKGKRPIMGR-ISVEKADVTIVT 403

Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +        + L  +                 S +  GDV ++  K 
Sbjct: 404 DDNPRSEDAASIRAEILAGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKG 455


>gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 495

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 149/457 (32%), Gaps = 31/457 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++AP +AF AI G    G  F+  A   GA  V+        
Sbjct: 13  DVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPAPDG 72

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  + +    V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 73  LP-VPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 132 PTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   +AV T +   HL     + +  +AKA++F          +N DD F   L A    
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR-PGLKAAVVNLDDGFGRTLFASRDP 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      S     +A    +  +         + +QG+   V    +G     N+L   G
Sbjct: 251 VLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAG 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L          L    P  GR  R           L+   Y   P +++ A+S L 
Sbjct: 311 ALWALDIAPAQIATVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSSLR 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD---- 416
               H + R I V G   E     +     +AE+   +  ++     G    A+      
Sbjct: 368 S---HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILR 424

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              R                  +     D+V++  K 
Sbjct: 425 GFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461


>gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
 gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
          Length = 495

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 166/477 (34%), Gaps = 44/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I G          V GI  +S +    + F  I G   DG +F   A+  G
Sbjct: 1   MNLRELLAVIDGVEYQG-KDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAG 59

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           A   +++    +         V    ++     ++          K  I+ +TG+ GKTT
Sbjct: 60  AVAAIISPQAASKTSPTSDALVITASNLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
           T  ++   L+      A +G+          +A                        GI 
Sbjct: 120 TTHLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQAVDAGCQLGIM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R         ++V T +   HL     +E+   AKA +F      G   +
Sbjct: 180 EVSSHSLAQDR--VFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQGRAVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD + + L   +  L  + ++++  +  +ADF +             +     +    
Sbjct: 238 NIDDQYGQRL---TIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFS 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G +  +N+L  +  V  L  D++T +  +  F    GR +R +   +Q    ++D 
Sbjct: 295 SPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDISVIVD- 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++   ++L    P   GR I V G     G+  ++    +  + +      V
Sbjct: 354 -YAHTPDSLE---NLLKAARPFIPGRIICVFGC---GGDRDKTKRPKMGRIAADLADVVV 406

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLF-----LFIQSSL---VDGDVVVV--KS 451
             S        DA+   I     E +  L        I +++     GD V++  K 
Sbjct: 407 VTSDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKG 463


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 43/413 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   V +   + IP+    ++L         ARL  +   IA+ G+ GKTTT  M 
Sbjct: 74  AIADDNPEVVAAKRMGIPIVRRGEML---------ARLMKEKQGIAVAGAHGKTTTTSMT 124

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            + L          IG   ++IG    L R     D+ + E   S    +     L+ P 
Sbjct: 125 ALVLEMNGLDPTILIGGDLSYIGGNAKLGRG----DYLVAEADESDGSFL-----LLDPV 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I   HL  +   E I  A  E    + ++G   +  DD     L A        
Sbjct: 176 VAVVTNIEDDHLDYYGSRENIVKAFREFLNKVPESGLAVVCGDDPTVRQLIADLTC---- 231

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            + ++G  +  AD+ +  +    E +  +V  +G+ + ++V +  GYH   N L  + + 
Sbjct: 232 PLVTYGSYNSGADYTIDSFALQGETTLGQVSFRGEKLGQLVLNVPGYHNLLNALAVVAVG 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +         AL  F   +G  +RY+         ++D+ Y  +P  +KA +    Q 
Sbjct: 292 RYVGLSFSQIAAALREF---KGAKRRYQLIGEVKGAKIVDD-YAHHPTEIKATLQAARQA 347

Query: 364 SPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKD 416
            P   GR IAV          +L + F     H D+  +  +Y      + G H   + D
Sbjct: 348 HP---GRIIAVFQPHRFTRTRQLFREFGESFAHADILILTDIYPAGEKPIEGVHTKLIVD 404

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A+ +  +  V Y  T++    F+   + +GD+V+   +     + +   LL+ 
Sbjct: 405 AIAKRPNQQVIYLPTLEEATNFLTQQVTEGDLVLTMGAGDV--WTVGRELLQR 455


>gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
 gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
          Length = 486

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 171/477 (35%), Gaps = 49/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T ++L +A +           V+ +  DSR       F A+KG   D HDFI   ++K
Sbjct: 1   MKTVNELAKATEITQWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           G  ++V    +        + V  V +   AL +LA A          ++ +TG+ GKTT
Sbjct: 61  GCRVIVAERVIEVPE---HVTVLVVPNSALALGELAHAFYDYPSRSLELVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFEL 167
           T  +L    + +      + +  N IG  +               L    VD       +
Sbjct: 118 TTTLLHDLYTELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSHCFM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     +       T I   HL      +E  +AK   F+ L+K     +N 
Sbjct: 178 EVSSHAISQHRIAGLVFKGGAFTNITHDHLDYHGTFKEYIAAKKTFFDELKKDAFALVNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     + +FG   +ADF+ +  +       + +      +E+    
Sbjct: 238 DDKNGMVMVQNTKA----KVSTFGLKTHADFKAKVLENSFSGLLLTIN----GIELWTRL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+    GI  +L +D    +  LS     +G   R++   ++   T + + Y 
Sbjct: 290 IGDFNAYNIATVYGISQLLGSDSTEVLTVLSKLEAVDG---RFQFTKSETDITAVVD-YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +  I    E + I V+G     G+       ++A +    + + V L+
Sbjct: 346 HTPDALENVLKTIENIRTRNE-QVITVVGC---GGDRDALKRPEMARIACELS-NKVILT 400

Query: 408 GFHVL-----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                    +S+ V      D       S     D++++  K 
Sbjct: 401 SDNPRTEDPAEILKQMEAGVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKG 457


>gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 511

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/485 (20%), Positives = 170/485 (35%), Gaps = 50/485 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  + + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV-DDVLGALNK---LAVAARLRSKATIIAITGSVGKTTT 122
             ++ +     IGS+      V +D L  +          R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFE 166
             +L   L  + K  A  G+  N       +A    D                 +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTI 223
           +    + + R          A+ T +   HL   S +E     K ++F      EK G  
Sbjct: 186 VSSHSIAQNRI--SGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGIS 243

Query: 224 FLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            LN DD +   L     K  +L    I      K+  F +   K     S        + 
Sbjct: 244 VLNIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF- 339
           +++    +G     N +  + I+  L   +    K +  F    GR ++     +     
Sbjct: 304 IKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNDDVSSL 363

Query: 340 --TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             TLI + Y   P  +K    VL  I    EG+ I V G     G+   S    +  + +
Sbjct: 364 LPTLIVD-YAHTPDGLK---KVLKSIKKLCEGKLITVFGC---GGDRDCSKRPLMGSIAA 416

Query: 398 LYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMD-GLFLFIQSSLV---DGDVVV 448
            ++  H++++           + + +   I      T++   F  I  S+      D+V+
Sbjct: 417 EFS-DHLFITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVL 475

Query: 449 V--KS 451
           +  K 
Sbjct: 476 IAGKG 480


>gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
 gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
          Length = 492

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 150/478 (31%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +L+ I+       P   V+ + +DSR + P + F AIKG   DG  FI  A++K
Sbjct: 1   MRDLKSILKYIE----IDAPSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEK 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +      +   S+ +    D   A        +      +I +TG+ GK+TT 
Sbjct: 57  GAVAVIADRLCEFDVAFESLYLVSELDKKLAELASRFYDKPSHNLDLIGVTGTNGKSTTT 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGM 169
            M+           A IG+        LT              +       D  +  + +
Sbjct: 117 AMIAHLAQYCNTQSAIIGTLGFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAMEV 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G ++      +   AV T ++  HL     +     AK  +F   +    + LN DD
Sbjct: 177 SSHGLVQHRVAQCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFDPQ-LVVLNQDD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +       K        +  +G+   A                E    ++      ++V 
Sbjct: 236 NQAGQWLEK---YDFNNLICYGRKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVK 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+   L  +  L   ++  I       P  GR + +  A           
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLIAGCQQLQPVAGRMQAFSVA----GKPTCVV 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P   +A    L  +  H  G    V G   +  +  +          +  N + V
Sbjct: 349 DYAHTP---EALALALQALQKHVPGGVSCVFGCGGDRDKGKRVLMAQ----AAEKNANKV 401

Query: 405 WLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +         +  +   L      H          +  ++    +VV++  K 
Sbjct: 402 IITSDNPRSEDPNVIIAEVASGLAAPQSAHLEADRASAISYAINNAASNEVVLIAGKG 459


>gi|224826079|ref|ZP_03699182.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
 gi|224601716|gb|EEG07896.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
          Length = 463

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 161/426 (37%), Gaps = 50/426 (11%)

Query: 53  GHDFILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA +VV       +   V    +  IPV     +L  L +         
Sbjct: 56  GHD---AAYMQGADVVVTSTAVKADNPEVVEAKARHIPVIPRAMMLAELMRFKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  +    L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLTASVLAAAGLDP------TFVIGGKLTAAGTNAKLGSGEFL 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P +AV+T I   H+  +    +++  A  +    L   G   L
Sbjct: 158 VAEADESDASFL--HLAPVMAVVTNIDADHMDTYEHSFDKLKQAFVDFLHRLPFYGRAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---ME 282
             DD+    +  +      K + ++G S +AD Q    +    Q   +V  +  +     
Sbjct: 216 CLDDANVREILPRV----TKPVTTYGFSDDADVQAANVRAVGGQMHFDVVARNGNQLHFP 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           VV +  G H   N L  + I     ADV +  + L+ F     R +RY   A   G    
Sbjct: 272 VVLNLPGRHNVLNALSAIAIGLECGADVASIQQGLAEFAGVGRRFQRYGEVACPSGGHFT 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A ++ +    P        VL         ++    D  +VLS  ++
Sbjct: 332 LVDDYGHHPVEMAATLAAVRGAFPAQR----LVLAFQPHRYTRTRDLFEDFVKVLSTVDV 387

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
              S V+ +G   +   D  AL R++ V       + E +  L   I  ++ DGDVV+  
Sbjct: 388 LLLSEVYAAGETPIVAADGRALARAVRVTGKVEPLFIEAIADLPQVILDTVQDGDVVITM 447

Query: 451 SSNSCG 456
            + S G
Sbjct: 448 GAGSIG 453


>gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate
           ligase-like protein [polymorphum gilvum SL003B-26A1]
 gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 489

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 167/452 (36%), Gaps = 40/452 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   V+G++ DSR + P   F A++G   DG  F+  A+++GA  V+ +    A++   
Sbjct: 16  PPTLSVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVAVLTDAQGAAALAGT 75

Query: 82  S---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               +PV    D   AL  +A     R   T++A+TG+ GKT+    +           A
Sbjct: 76  MPDSVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHAGHASA 135

Query: 139 CIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182
            +G+                 + + +   LAR+  + +     E     L + R     V
Sbjct: 136 SLGTIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEASSHGLEQHRL--DGV 193

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R      T +   H+   +  E+   AK  +F + L   G++ ++  +   + + A +  
Sbjct: 194 RLVAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAVARE 253

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I++ G+ + AD +L   +       + V+      ++     G     N L+  G
Sbjct: 254 RGL-HIFTVGE-RGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAAG 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +           ++AL       G   R      +    L+   Y   P +++ A++ L 
Sbjct: 312 LAITAGEATGAVLRALEDLEGAPG---RLELVGRKANGALVFVDYAHKPDALENALAALR 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPR 420
              P   GR   V+G   +     +          +  +   V ++  +  +    A+ +
Sbjct: 369 ---PFTCGRLFVVIGAGGDRDPGKRPLMG----AAAARHADVVIVTDDNPRSEDPAAIRK 421

Query: 421 SIHVHYSETMD-----GLFLFIQSSLVDGDVV 447
           ++     + ++            + L  GDV+
Sbjct: 422 AVLAGAPDALEIGDRGAAIAEAVARLEAGDVL 453


>gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens
           200]
          Length = 500

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 173/489 (35%), Gaps = 58/489 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL                N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWFIYSGDQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDL 56

Query: 64  GAGLVVVNTDMVASIG------------SLSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
           GA  V+V+TD     G             +            A  +  +A +     +  
Sbjct: 57  GAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLG 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPV 158
           II ITG+ GKT+T +++   ++S+ +  A +G+  N +   L           TL R   
Sbjct: 117 IIGITGTNGKTSTSQLIAQLVTSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 176

Query: 159 DVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           + +     +  + +S  G ++     V   +AV T +   HL     +E   +AK  +F 
Sbjct: 177 EFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME 273
                G   LN DD   E    +   +  + I+ F     + A F  +  +   +     
Sbjct: 237 F-STLGHGLLNLDDPVGETWLIELKDMAAQ-IWGFSIEGHQAAAFYTKNTQFDDQGVSAT 294

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +       ++    +G     N+L  L  + +   D++   + +    P  GR +R+  A
Sbjct: 295 LVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERFTTA 354

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + 
Sbjct: 355 DN---ITLVVD-YAHTPDAIEQALTALRR---HCAGDLWCVFGC---GGDRDKGKRPLMG 404

Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                Y    + ++  +  +         +   L                  +      G
Sbjct: 405 RAAEQY-ADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSG 463

Query: 445 DVVVV--KS 451
           D++++  K 
Sbjct: 464 DLILLAGKG 472


>gi|255066169|ref|ZP_05318024.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
 gi|255049714|gb|EET45178.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
          Length = 469

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K      
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDAADIYATDIESVGAQMKFTVHVQMKGHEQAP 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   + L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGDMKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   +LE
Sbjct: 449 NMGAGSIN--RVPAAMLE 464


>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
          Length = 499

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/457 (20%), Positives = 165/457 (36%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 26  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 84  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 143

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 144 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 202 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 261 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR      A   G    ID  Y   P +++   +VL+ 
Sbjct: 320 AMVTGVPAAAAMRALALLKGAPGRLDLV-GATEDGAPAYID--YAHKPEALE---NVLTS 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 374 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 429

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 430 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
           M5-90]
          Length = 490

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/457 (20%), Positives = 165/457 (36%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR      A   G    ID  Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLV-GATEDGAPAYID--YAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
 gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
          Length = 506

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 177/483 (36%), Gaps = 48/483 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F ++++ +   ++ + P   V G+  DSR       F A++G   DG+ ++  A++ G
Sbjct: 1   MRFEEIVRGVTTLAVRLAP-VDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLG 59

Query: 65  AGLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           A  V+ ++  V         I V  V+    AL +++            + A+TG+ GKT
Sbjct: 60  AVAVLTDSPTVFEDLTSRSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           TT  ++   L S+ +    +G+   H+   +  +         + E              
Sbjct: 120 TTAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAV 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIF 224
           + MS    ++     +   +AV T +   HL     + E A AKA +F G+         
Sbjct: 180 MEMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRIAV 239

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG---KSKNA-DFQLRKWKQCSEQSWMEVQLQGKS 280
           +N DD    ++   +    + T Y  G     +NA +F     K  +  +   +      
Sbjct: 240 INADDPSAGMMVEAASGCEVWT-YRVGAREFDENAYEFVADDVKLGAGWTEFALVTPMGE 298

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G     N++  +         +D  ++  +   P  G   R+    N    T
Sbjct: 299 RVVRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPG---RFETVGNDLGIT 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y     +++  I +  ++   GEGR I + G     G+  ++    +    +   
Sbjct: 356 VVVD-YAHTDDALRNLIGLAREL--VGEGRVITMFGC---GGDRDRTKRPKMGR-AAGDG 408

Query: 401 ISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSL---------VDGDVVVV- 449
              V ++  +  +    A+   + V   +T   + + +   +           GD+V++ 
Sbjct: 409 SDLVIVTSDNPRSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLLA 468

Query: 450 -KS 451
            K 
Sbjct: 469 GKG 471


>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis ATCC 23457]
 gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
           23457]
          Length = 488

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/457 (20%), Positives = 165/457 (36%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR      A   G    ID  Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLV-GATEDGAPAYID--YAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
 gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
          Length = 506

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 175/473 (36%), Gaps = 56/473 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             I    +  + G++ DSR +     FFA+ G H+DG +FI  A+++G+ ++V   D+  
Sbjct: 21  KEIKGSCEVEILGLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINF 80

Query: 77  SIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +++       ++   ++               II +TG+ GK++    +   L S+ 
Sbjct: 81  YDPNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNLKIIGVTGTDGKSSVCFYIYTLLKSMG 140

Query: 135 KTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGIFELGMSHLGEI 175
                I +                        + L L++M   +V++ I E   SH  +I
Sbjct: 141 VKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVE-STSHGLDI 199

Query: 176 R--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFF 232
           R   L  +    +AV+T ++  HL     ++   +AK  +F   +   G   +N DD  F
Sbjct: 200 RTSRLIDIAYF-VAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIINMDDKNF 258

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                      I   Y++  ++KNADF + K  +    +  E   +    +   +  G  
Sbjct: 259 STFLN-----TINRAYTYSLENKNADFFVSKINEQMGFTEFEFYHKNVKYDARVNLTGSF 313

Query: 292 MAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             +N++  L +VS ++  DV   I         EG   R +       F+LI + Y   P
Sbjct: 314 NVENVMAALIVVSQVMNVDVSELID---KLVNIEGLFGRMQGVDFGQDFSLIID-YAHTP 369

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +      +  ++S +   R I+V G   E   L +    ++A+  S      + L    
Sbjct: 370 GAFLKIFPIFKRLSKN---RLISVFGSAGERDVLKRKLQGEIADRYS----DIIILCDED 422

Query: 411 ---------VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    +  + + +     +  + +            +     D+VV   
Sbjct: 423 PRGEDSMQIIRDIAEGISGKTLNRDLFFIPDRKSAIEKAINIAHTDDLVVTLG 475


>gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 87/464 (18%), Positives = 161/464 (34%), Gaps = 53/464 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR +AP + FFA  G   DG  +I  AV++GA  VV           + +P   V
Sbjct: 23  QLTSDSRRVAPGDVFFAYVGD-ADGRSYIADAVERGAAAVVYEAAGFTWPAQIDVPHLAV 81

Query: 89  DDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYN 144
            D+     ++A     +       +A+TG+ GKT+    L IALS +    T   IG+  
Sbjct: 82  TDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVIGTLG 141

Query: 145 NH--------------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                                 + +  +L ++      G   +  S +G  +   + +  
Sbjct: 142 VGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQG-RVGALAIEASSIGLAQGRMNGMHV 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T     HL     ++    AK ++F+         +N DD   + L        +
Sbjct: 201 DVALLTNFTRDHLDFHGDMQTYEDAKRKLFQW-PGLKHAVVNLDDDMGQRLLPLLAERKV 259

Query: 245 KTI-YSFGKSKNAD------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             I Y+    +  D       +  + +     +   V     S +V    +G     N+L
Sbjct: 260 PVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVDSPFGSGQVKTQLVGRFNVSNVL 319

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +G++       D  + A +   P  GR +++          LI   Y   P ++   +
Sbjct: 320 GIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQF----GGPDVPLIVIDYAHTPDALDKTL 375

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412
           S L Q++    G+   V G     G+        + ++        V L+          
Sbjct: 376 STLRQLATQRGGQLWCVFGC---GGDRDPGKRPQMGQIAEQ--ADQVVLTSDNPRSEDPQ 430

Query: 413 ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+ D +      +         G  L+        DVV++  K 
Sbjct: 431 AIIDQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKG 474


>gi|239999603|ref|ZP_04719527.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           35/02]
 gi|240014778|ref|ZP_04721691.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           DGI18]
 gi|240081137|ref|ZP_04725680.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113349|ref|ZP_04727839.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240116304|ref|ZP_04730366.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID18]
 gi|240118591|ref|ZP_04732653.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121301|ref|ZP_04734263.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124134|ref|ZP_04737090.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID332]
 gi|240126250|ref|ZP_04739136.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494318|ref|ZP_05107489.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268595414|ref|ZP_06129581.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597248|ref|ZP_06131415.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599423|ref|ZP_06133590.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268601971|ref|ZP_06136138.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268604302|ref|ZP_06138469.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268682759|ref|ZP_06149621.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268684831|ref|ZP_06151693.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043155|ref|ZP_06568878.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|293398491|ref|ZP_06642669.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
 gi|59718763|gb|AAW90168.1| putative UDP-N-acetylmuramate--alanine ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|193934636|gb|ACF30460.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513358|gb|EEH62703.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268548803|gb|EEZ44221.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551036|gb|EEZ46055.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583554|gb|EEZ48230.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268586102|gb|EEZ50778.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268588433|gb|EEZ53109.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268623043|gb|EEZ55443.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268625115|gb|EEZ57515.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012761|gb|EFE04744.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|291610962|gb|EFF40059.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
          Length = 506

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 98  EHVNGADVVVA-----STAVKKENPEVVAALERQIPVIPRALMLAELMRFRDG------- 145

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 146 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 198

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 199 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 253

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 254 CVDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 309

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 310 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 369

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 370 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 425

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 426 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 485

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+ + LLE
Sbjct: 486 NMGAGSIN--RVPSALLE 501


>gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
 gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
          Length = 492

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 163/481 (33%), Gaps = 50/481 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   +L  I               +++DSR +   + F A+ G   DG D+I  A
Sbjct: 1   MTASASHQHILDRINAALPETAWPNMNGHMTLDSRKVGEGDIFVALPGVQRDGRDYIKQA 60

Query: 61  VQKGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGS 116
           + +GA LV+   +     +    S  +  V D+   L  LA         +  ++A+TG+
Sbjct: 61  LAQGAALVLAEANDFNISTDADSSSRIMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFG-- 163
            GKT+  E +   L ++     C+G+  + +              LT+     D      
Sbjct: 121 NGKTSVVEFVGQLLRALGVEAGCVGTLGSRLEAAPADAMNTTPDVLTINHQLADWQHQGI 180

Query: 164 ---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLE 218
                E     L + R  +  +  H  V T +   HL       + A+AK  +F    L+
Sbjct: 181 KHVALEASSHALHQGRLAS--LSLHTGVFTNLTRDHLDYHGNAADYAAAKLSLFNTFNLK 238

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +      N DD     + A + A  I         + A+  ++   +      +E+Q   
Sbjct: 239 R---AIFNADDPVASQVLAVAGASAIGITL-----EGAEAHVQVAIRSMRPMLLEIQSPW 290

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + E+     G   A N++  +  V+ L  D      A     P  GR +R   + N+  
Sbjct: 291 GAAEINLALSGRFNAFNVVAAIVAVTGLGHDFHRVCAAAESLKPVPGRMERILMSGNR-- 348

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L    Y   P ++++A+  L       +GR   V G   +     +S    +    + 
Sbjct: 349 --LAVVDYAHTPDALESALQTLRG---ETKGRLWVVFGCGGDRDSGKRSL---MGRSAAR 400

Query: 399 YNISHVWLS----GFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +    V  S    G     + + +                      +    GD V+V  K
Sbjct: 401 WADHIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAEAIRHALALAESGDTVLVAGK 460

Query: 451 S 451
            
Sbjct: 461 G 461


>gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
          Length = 486

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 94/456 (20%), Positives = 157/456 (34%), Gaps = 56/456 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   + F AI GP  DG DF+  A++KGA  +V   ++      L        
Sbjct: 24  VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAEL----ISHP 79

Query: 90  DVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
               AL +LA+     + + I  + ITG+ GKTTT  ++   LSS       +G+ +   
Sbjct: 80  SPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTVSYRW 139

Query: 148 GV---------------PLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                               LA+M    VD  + E+    L + R     ++   AVIT 
Sbjct: 140 PGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNR--VCGLKFDAAVITN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +   HL     +EE   AK  +F+          +N+DD F   L              +
Sbjct: 198 VTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLE-----CYSPAIGY 252

Query: 251 GKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           G   +                 +   +++   G+  E+    IG     N+L    I   
Sbjct: 253 GMDASCATGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLH 312

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +             F    GR +R R       F      Y   P ++   +  L  +  
Sbjct: 313 MGLTPKQM-NVFKEFDGVPGRLERVRNDQGLNIFV----DYAHTPDALDNVLRTLKDLDF 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
           +   + I V G     G+  ++    +AE    Y+   V  S        +  + DA P 
Sbjct: 368 N---KVITVFGC---GGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPG 421

Query: 421 SIHV-HYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                H  E +D         + + + DV+++  K 
Sbjct: 422 LKGCDHVIEEVDRADAIRKAVAEMTEDDVLLIAGKG 457


>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 163/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 26  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 84  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 143

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 144 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 202 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 261 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 320 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 374 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 429

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 430 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 490

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 163/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
 gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 153/457 (33%), Gaps = 53/457 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87
           I  DSR +   + F A+ G + DG  FI  AV+ GA  +V         +  +    V  
Sbjct: 26  IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVCLPGGAEAEAARAAGCTVVH 85

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            DD   AL +L  A          ++ +TG+ GKTT+  +L    ++       +G+ + 
Sbjct: 86  HDDPREALWRLAEARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTVSY 145

Query: 146 HIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   A +                   VD  + E+    L + R     V    A  
Sbjct: 146 RWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQR--VCGVPFAGASF 203

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           + +   HL     +E    AK+ +F  L      + +N DD +   L             
Sbjct: 204 SNLTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELC-----PRAL 258

Query: 249 SFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           SFG  K                ++   + + L G+  E+    +G   A N+L    +  
Sbjct: 259 SFGLQKALPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQALAL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D  ++ L  FH   GR +R   A     F      Y   P ++   ++VL  + 
Sbjct: 319 ELGLMPDD-LRHLEGFHGVCGRLERVPNARKLHVFV----DYAHTPDAL---VNVLKALR 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLA-LKDALP 419
             G  R + V G     G   ++    + E ++ Y+   V  S         A LKD LP
Sbjct: 371 GAGFKRIVTVFGC---GGNRDRTKRPIMGEAVARYSDVAVLTSDNPRFEDPEAILKDVLP 427

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  V                L   D +++  K 
Sbjct: 428 GLREDREVVVEVDRRKATAKAVEMLGPDDALLIAGKG 464


>gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
 gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
          Length = 479

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 102/462 (22%), Positives = 172/462 (37%), Gaps = 49/462 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G+S+DSRS+   +AFFA+ G    G  +   AV++GA +VV ++          
Sbjct: 2   PDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSSGAGVRAPEP 61

Query: 83  IP--VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                  V D+   L  +A            +IA+TG+ GKT+    +  AL     T A
Sbjct: 62  GLGFAVPVRDLGRHLGSIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQPDHPT-A 120

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182
            IG+     G+P  L R+       I                  L  S  G+ +   + V
Sbjct: 121 VIGTLG--WGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRINGV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A+ T I   HL+     E   +AK  +              DD   + +     A 
Sbjct: 179 HCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALEFVAVT-LDDPSVDAILRSVPAG 237

Query: 243 GIKTIYSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                YS G  ++ DF   ++   +Q  E   ++V   G+++E+     G   A+N+L T
Sbjct: 238 VKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAENLLGT 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  L    + A   +    P  GR +R+R    +   T+I + Y   P +++   +V
Sbjct: 298 LAVLVGLGYPAEAAASRVGRVRPVPGRMERFR----ENGLTVIVD-YAHTPDALR---NV 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--------SGFHV 411
           L+ +  H   R   V G     G+  +    ++  + +     HV +         G  +
Sbjct: 350 LTSLRRHCRERLWVVFGC---GGDRDRGKRPEMGAIAARI-ADHVIVTDDNPRSEPGDAI 405

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +    A      V              +   DGD+V+V  K 
Sbjct: 406 VQDILAGCGETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKG 447


>gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum
           ATCC 12472]
 gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC
           12472]
          Length = 464

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 167/464 (35%), Gaps = 48/464 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + + + G    +      +G +   R  A     FF     + +G D ++      +  V
Sbjct: 21  IAEVLHGLGYTVSGSDMADGATT-KRLAAEGVRVFFGHDATYVEGADVVVT-----STAV 74

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
             +   V +     IPV     +L  L +             IAI G+ GKTTT  +   
Sbjct: 75  KADNPEVLAARDKRIPVIPRALMLAELMRFKQG---------IAIAGTHGKTTTTSLTAS 125

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L +              IG  LT A     +  G F +  +   +  FL   + P +AV
Sbjct: 126 VLGAAGLDP------TFVIGGKLTAAGTNAKLGLGEFLVAEADESDASFL--HLTPVMAV 177

Query: 189 ITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +T I   H+  +    +++  A  +  + +   G   L  DD     ++ +      K +
Sbjct: 178 VTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERV----TKPV 233

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++G   +AD      +  + Q   +V ++        +V +  G H   N L  + I  
Sbjct: 234 TTYGLDDSADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGL 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              A ++   K LS F     R +RY       G    + + Y  +P  M A ++ +   
Sbjct: 294 ECGASIEAIQKGLSEFAGVGRRFQRYGEVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGA 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--AL 418
            P     R  +L         ++    D  +VLS  +    S V+ +G   +   D  AL
Sbjct: 354 FPD----RRLLLAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAPIVAADGRAL 409

Query: 419 PRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            R++ V       + E +  +   I  +  DGDVVV   + S G
Sbjct: 410 ARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVVVTMGAGSVG 453


>gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
 gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
          Length = 487

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/459 (20%), Positives = 176/459 (38%), Gaps = 47/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 ++ DSR + P   F A  G H DG  +I  AV  GA  V+ ++       ++ +
Sbjct: 8   NQTFTAVTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDSQDFVWNAAIKV 67

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              GV ++   + ++A         K  +I +TG+ GKT+  + +  A+ ++ K  A IG
Sbjct: 68  SNLGVRELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIG 127

Query: 142 SYN---------------NHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHL 181
           +                 N     + L +M  D         + E+    L + R   + 
Sbjct: 128 TIGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGR--VNA 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    AV T +   HL     ++  ASAK ++F+      T  +N DD F + + A+S  
Sbjct: 186 IEFDFAVFTNLTRDHLDYHVTMDAYASAKQKLFDW-PSLRTAIVNADDDFGKKM-AESLR 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +  K++ ++G   + D +  +         M+V     +  +    +G   A N+L  L 
Sbjct: 244 VNNKSLLTYGL-LHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVLA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +      ++ AI A++   P  GR +++          L+   Y   P +++   +VL 
Sbjct: 303 TLLARQVPLNEAIAAIAQIKPVAGRMQQF----GGNDKPLVVVDYAHTPDALE---NVLV 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            +    +G+ + V G     G+        +  +   Y    V  S      +   + + 
Sbjct: 356 SLREQTQGKLVCVFGC---GGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEH 412

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVV--KS 451
           +   + V  S   D     IQ ++      DVV++  K 
Sbjct: 413 VVNGMTVLPSVAPDRAIA-IQQAIKFANKDDVVLLAGKG 450


>gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phymatum STM815]
 gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum
           STM815]
          Length = 512

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 83/486 (17%), Positives = 174/486 (35%), Gaps = 52/486 (10%)

Query: 1   MNPLWTFH----DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M+ L + H     + +A+        P      +  DSR IAP + F A      D   F
Sbjct: 1   MSALRSSHPAQQQIAEALAWLRAHAQPGA---HLHADSRKIAPGDVFLAYAVDGADNRPF 57

Query: 57  ILHAVQKGAGLVVVNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           I  A+++GA  V+V  D  A     +L + V  ++++ G +              +I +T
Sbjct: 58  IASAIERGAAAVLVQADGFAGDIDPALMVAVPRLNELTGTIASAW-YGDPSDAMRVIGVT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVD 159
           G+ GKT+    ++ AL+++ +  A IG+  + +   L               +L ++   
Sbjct: 117 GTNGKTSCTNWISAALTALGQPCAIIGTLGSGMPGQLVHTGFTTPDAPQLQRSLEQLRAA 176

Query: 160 VDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
               +  E+    L + R   +     + V T +   HL          +AKA +F    
Sbjct: 177 GAKAVAMEVSSHALHQGR--VNGTAFSVGVFTNLTQDHLDYHGTFAAYEAAKARLFSW-P 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWM 272
           +     +N DD     + A ++  G     ++     AD Q          +  +  +  
Sbjct: 234 ELKAAVINADDEAGRRMIASTN--GHAKTIAYSLQPRADVQADASIVASNVRATTTGTAF 291

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +     + ++  + +G     N+L  LG +       D A+  ++      GR +R   
Sbjct: 292 HIASDWGNSDIEVNTLGAFNVSNLLGVLGALLASDVPFDAAVAQIAKLESVNGRMERL-G 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              Q    L+   Y   P +++  ++ L  I+    G+ I + G   +     +    ++
Sbjct: 351 GRVQNDEPLVVIDYAHTPDALEQTLTALRPIADARGGKLICMFGCGGDRDATKRPLMGEI 410

Query: 393 AEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLV 442
           AE  +      V ++  +  +         +   +  +      E     +   ++ +  
Sbjct: 411 AERCA----DGVVVTSDNPRSEDPHKIIDQIAAGMKDASKARRIEDRASAILQAVRCAAR 466

Query: 443 DGDVVV 448
           +  VV+
Sbjct: 467 EDVVVL 472


>gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 488

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 163/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|325132969|gb|EGC55646.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M6190]
 gi|325136990|gb|EGC59587.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M0579]
          Length = 506

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 98  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 145

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 146 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 198

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 199 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 253

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 254 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 309

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 310 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 369

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 370 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 425

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 486 NMGAGSIN--RVPAALLE 501


>gi|240128804|ref|ZP_04741465.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268687186|ref|ZP_06154048.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627470|gb|EEZ59870.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 506

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 98  EHVNGADVVVA-----STAVKKENPEVVAALERQIPVIPRALMLAELMRFRDG------- 145

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 146 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 198

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 199 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 253

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 254 CVDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 309

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 310 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 369

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 370 ALLVDDYGHHPVEMAATLAAARGAYPD----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 425

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 426 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 485

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+ + LLE
Sbjct: 486 NMGAGSIN--RVPSALLE 501


>gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella pealeana ATCC 700345]
 gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC
           700345]
          Length = 488

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 169/455 (37%), Gaps = 49/455 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA------SIGSLSI 83
           I++DSR++     F AI G   DG  FI  A ++GA   +V+TD         + G L I
Sbjct: 22  ITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQI 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             F ++  + AL         +S+  I+ +TG+ GKT+  +++        K  A +G+ 
Sbjct: 82  LFFQLNRQISALAA-QAYPLSQSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGTL 140

Query: 144 NNHIGV-----------PLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPHIA 187
            N +             P+TL +    V+         E+    L + R     V   +A
Sbjct: 141 GNGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGR--VEAVPFDVA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +EE   AK  +F+     G +  N DD       A   +  +   
Sbjct: 199 VFTNLSRDHLDFHHTMEEYGIAKKRLFQFANLRGGLI-NIDDVVGREWLADLASDKLLG- 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S      AD   +            +       ++    +G     N++  LG + +L 
Sbjct: 257 FSVKGDSTADIYTKDNHFHDGGVSCTLVWPTGEAQLNSPLLGDFNLSNLVAALGALYLLG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D+ T +       P  GR +R+     +   TL+ + Y   P +++ A+  L     H 
Sbjct: 317 EDMHTLVALAPKLEPVAGRMERFTS---KDGVTLVVD-YAHTPDAIEQALKALR---VHC 369

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
           +G+   + G   +  +  +      AE  +      V ++  +  +      + D L   
Sbjct: 370 KGQLWCLFGCGGDRDKGKRPMMAASAEQFA----DRVMVTSDNCRSEDPNAIISDILAGL 425

Query: 422 IHVHYSETMDG---LFLFIQSSLVDGDVVVV--KS 451
            H   + +          I +    GD+V++  K 
Sbjct: 426 QHPQQALSQVERQVAIKEIVAQAASGDMVLLAGKG 460


>gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
 gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
          Length = 501

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 147/419 (35%), Gaps = 39/419 (9%)

Query: 25  GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             V G +  DSR +AP +AF A  G   DG   +  A+ +GA   +V  + V   G    
Sbjct: 19  ARVTGTLQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQEDVEPFGLAGE 78

Query: 84  PVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136
            +  +  +  A  L       R   +  ++A+TG+ GKT+T   L  AL+ + K      
Sbjct: 79  HIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADALNGLSKKELPAL 138

Query: 137 --YACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTH 180
              A +G+    +   L+   M                    G   +  S +G       
Sbjct: 139 AGCALVGTLGIGVPPGLSSTGMTTPDPVRLQRAFAQFAQEGLGACAIEASSIGLAEQRLA 198

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +  +A+ T +   HL   S +     AK  +F+         +N DD+    L A+  
Sbjct: 199 GTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFDW-PGLRAAVVNIDDAHGARLHAELQ 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  ++S      A  Q R            V    +++ +    IG +   N+L  +
Sbjct: 258 GGGL-DLWSVSIQGPARLQARDIVHRGAGLAFTVAESAQALPLQTRLIGLYNVSNLLGVI 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L   +  A+ A +   P  GR ++   A       L+   Y   P ++  A++ L
Sbjct: 317 AGMRALGVPLAQALDACARLAPVPGRMEQLAFA----GQPLVAVDYAHTPDALHQALAAL 372

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLAL 414
             ++    GR   V G         +     +A+         V ++     G    A+
Sbjct: 373 RPMAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQ----READRVIVTSDNPRGEDPRAI 427


>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
 gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
          Length = 499

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 162/467 (34%), Gaps = 61/467 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G ++DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKT--RTFAEAALTNGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             +        DV   + +       ++       IIA+TG+ GKTT   ++   +SS +
Sbjct: 76  EWVC------SDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLIAELISSQQ 129

Query: 135 KTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N I   LT +                       F   E     L + R  
Sbjct: 130 QRCAVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRL- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KA 237
            +     IAV + ++  HL     +E  A AKA +F+         +N DD+  +L+ K+
Sbjct: 189 -NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKF-NSLKVAVINLDDAHADLMIKS 246

Query: 238 KSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +      I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N+
Sbjct: 247 AKNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENL 306

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L        D+   +  +       GR +  R         L    Y   P ++   
Sbjct: 307 IAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIR-----DDERLFVVDYAHTPDAL--- 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           I VL  +  H   +  AV G   +     +          +L   + V L+         
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDP 414

Query: 412 LALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   + + I      +H          F+      GD+VV+  K 
Sbjct: 415 EQIFADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKG 461


>gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0101]
          Length = 506

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 162/484 (33%), Gaps = 50/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+ +       +    V  +S DSR + P   F  + G   DG  F   A++ GA 
Sbjct: 5   LHPLLRQVGLAVPPGLANADVTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAV 64

Query: 67  LVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTTT 122
           L V+      +   +   PV  V D +     +  A        +  +I +TG+ GKTTT
Sbjct: 65  LAVIGRAAAEACPPADQDPVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++    +S     A  G+  N        A+                       G  E
Sbjct: 125 THLIEHLAASCGTPSALFGTLVNRWPGHSVTAQHTTAFADVLQGQLAQAAEAGAQVGAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-----EGLEKTG 221
           +    L + R      R   AV T +   HL     ++    AKA +F     E  E   
Sbjct: 185 VSSHALDQQR--VSGCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQA 242

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T  +N DD + + L  +      +   S  +S  A+ ++ + +  SE     +     S 
Sbjct: 243 TAVVNVDDPWGQQLAERLGGHAWRC--SLEESSEAELRMEQLQFSSEGVKGVLVSPHGSG 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338
                 +G     N L  +G +      +   ++ L+ F    GR +R    R    +G 
Sbjct: 301 PFQSPLLGRFNLMNQLQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGVGRAECCEGS 360

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +   Y   P  +++A+       P  +G+ I V G   +     +     +A  L+ 
Sbjct: 361 LPAVLVDYAHTPDGLESALKACR---PFAQGQLICVFGCGGDRDRTKRPLMGSIAARLA- 416

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +            +   +P    V            + ++    D+V++
Sbjct: 417 ---DQVVVTSDNPRTEDPQQILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLI 473

Query: 450 --KS 451
             K 
Sbjct: 474 AGKG 477


>gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 484

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 147/414 (35%), Gaps = 30/414 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL   +    I  V    V GIS DSR +     FFA+ G   DG  +   A  + 
Sbjct: 1   MKLRDLAGILPVEGIASV-DLEVTGISSDSRQVKAGVVFFALAGTKADGAVYAEDAAAR- 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            G   +     ++I  L +PV  VDD   AL + A     +    ++A+TG+ GKT+   
Sbjct: 59  -GAAAIVAGKGSTIAGLPVPVLAVDDPRLALAQSAARYFGKQPEIMVAVTGTSGKTSVAA 117

Query: 125 MLTIALSSIKKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELG 168
                        A IG+                  P+ L ++  +     V     E  
Sbjct: 118 FTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQELADAGVTHASMEAS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNY 227
              L + R     V+      T +   H+     IE+   AK  +F+ L   G    +  
Sbjct: 178 SHGLDQRRL--DGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDTLLPKGAPAVIFA 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +       + A G+  + + G+  +   +L++ +    +   EV+  G   E+    
Sbjct: 236 DDPWSAPTTVAAKAAGL-NVLTVGRHGDF-LRLKRVEHERHRQRAEVEADGVLYEIDLPL 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L++ G+       V  A+ AL       G   R       G    +   Y 
Sbjct: 294 AGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPG---RLDLVGTTGNGAPVYVDYA 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             P +++   +VL+ + P   GR I V G   +     +    ++A  L+   I
Sbjct: 351 HKPDALE---NVLASVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIATRLADVVI 401


>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter lovleyi SZ]
 gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
          Length = 506

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 150/495 (30%), Gaps = 65/495 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +   +        V+ ++ DSR +     FFA+ G   DGH FI  AV   
Sbjct: 1   MLLEQLLHEVPLQATHGNLDVTVSALTCDSREVTAGTLFFALHGSKVDGHRFISQAVT-- 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
                      AS     +P   V +   A+  +A            +I ITG+ GKTTT
Sbjct: 59  -AGAAAVVLEDASYAPEQVPWLQVTNGRQAMALMAARFFGNPTRDLPLIGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             +L   L++     A +G+ +   G     A              R   D     F + 
Sbjct: 118 SYLLEGILTAAGLPPAVLGTISYRFGTTCIEASHTTPESTELQGIFRQLADAGAQAFVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222
           +S     +         I V T +   HL     ++   SAK  +F  L           
Sbjct: 178 VSSHSLEQRRVDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPLRH 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD   E     +       +  +G +  ++  +R+           +        
Sbjct: 238 AVINADDPAAEEFIRAAAC----PVIRYGLAPGSEVTVRETTSSVNGISAILVTPQGEQP 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G     N+L        L   +   I+ +       GR +R     N+   T +
Sbjct: 294 FHSRLLGGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGRLERVE---NRAGVTCL 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y     +++  +S L  ++     R I V G     G+        +  + + Y+  
Sbjct: 351 VD-YAHTGDALENVLSTLKDLA---GARIITVFGC---GGDRDNGKRPIMGRIAAGYSDL 403

Query: 403 HVWL-----------------SGFHVLALKD-------ALPRSIHVHYSETMDGLFLFIQ 438
            V                   +G   L L++       A P        E          
Sbjct: 404 AVVTSDNPRTEDPHEILRQIRAGILPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAV 463

Query: 439 SSLVDGDVVVV--KS 451
                GD++++  K 
Sbjct: 464 RLARPGDILLLAGKG 478


>gi|240017226|ref|ZP_04723766.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           FA6140]
          Length = 506

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 98  EHVNGADVVVA-----STAVKKENPEVVAALERQIPVIPRALMLAELMRFRDG------- 145

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 146 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 198

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 199 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 253

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 254 CVDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 309

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 310 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 369

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  ++L+  
Sbjct: 370 ALLVDDYGHHPVEMAATLAAARGAYPD----KRLVLAFQPHRYTRTRDLFEDFTKILNTV 425

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 426 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 485

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+ + LLE
Sbjct: 486 NMGAGSIN--RVPSALLE 501


>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7424]
 gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
          Length = 496

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 176/480 (36%), Gaps = 45/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +    +LL  +    I   P     V GIS +S +    + F  + G   DG +F   A+
Sbjct: 1   MIKLRELLTKVPSLVIPEHPALDKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWTSAI 60

Query: 62  QKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           + GA   ++     +       + V    D++    +++         +  +I +TG+ G
Sbjct: 61  EAGAIAAIITPQAGSKYPPTEDVCVIQAADMVSICAEISAAFYGYPAQQMKMIGVTGTNG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDF 162
           KTTT  ++   L+  +   A +G+           A                      ++
Sbjct: 121 KTTTTHLIEYFLTQSQFNTALLGTLYTRWQGYQQTALHTTPFATELQEQLAQAVKAGSEY 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L +           +AV T +   HL     +E+  +AKA +F     TG 
Sbjct: 181 AVMEVSSHALAQ--RRVAGCPFEVAVFTNLTQDHLDFHKDMEDYFNAKALLFSPDYLTGR 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD + + L    ++L  + ++S+   + +A+F  +     +      +      +
Sbjct: 239 AIINLDDPYGQRL---INSLSGEKVWSYSVNNPDANFYTKDLTYEANGVSGILHTPIGEV 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G +   N+L  +G V  L  D+ + +++L +F    GR +R + +  Q    +
Sbjct: 296 NFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESLPLFSAVPGRMERVKISDKQDISVI 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P S++   ++L    P  EG+ I V G     G+  ++    + ++ +    
Sbjct: 356 VD--YAHTPDSLE---NLLKAARPFIEGKMICVFGC---GGDRDRTKRPKMGKIAAELAD 407

Query: 402 SHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V  S           +  +   +P+S+                     GD V++  K 
Sbjct: 408 LAVVTSDNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTAIMDAKPGDGVLIAGKG 467


>gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
 gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
          Length = 520

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 164/475 (34%), Gaps = 63/475 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  ++ DSR++ P + F A  G  +D  + I  A+  G   V+      +      IP  
Sbjct: 25  IQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEKQGFSWKPEWKIPNL 84

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           G+  +     K+   V         ++ ITG+ GKTT        + ++ +  A IG+  
Sbjct: 85  GISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTAIIGTLG 144

Query: 145 NHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +     L  A                 +       + E     L + R         IAV
Sbjct: 145 HGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRL--AGSEFSIAV 202

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +T +   HL     ++  A+AKA++F  EGL+      LN D+     L  +  A    +
Sbjct: 203 LTNLTRDHLDYHGSMDAYAAAKAKLFFWEGLQH---AVLNLDEVLGVELSQQL-AWKDVS 258

Query: 247 IYSFGKSKNAD----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           I  +G  +                   +  ++    +V+   +   +  +  G + A N+
Sbjct: 259 IIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNL 318

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L  +     D+D AI AL    P  GR +     L  G   ++   Y   P ++   
Sbjct: 319 LAVLATLLASNVDLDDAITALQQVQPIPGRME----KLGGGDQPIVIVDYAHTPDALNEV 374

Query: 357 ISVLSQISPHGEGRR---------IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++ L +       ++         + V+G   +     +    ++A  L+      V ++
Sbjct: 375 LTGLRETLAGTRMKKRIRKNQAKLVCVIGCGGDRDRGKRPLIGEIASHLA----DEVIIT 430

Query: 408 G-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KSS 452
                  +   + + +       +          I  ++     GD+V++  K +
Sbjct: 431 SDNPRNENPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDIVLIAGKGA 485


>gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
 gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
          Length = 487

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 152/414 (36%), Gaps = 27/414 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL      +        + G +ID R +AP   F A +G  ++G DFI  AV  G
Sbjct: 1   MRLTDLLAGFPATTGADAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFIAQAVADG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V    +              D+      +LA         T +A+TG+ GKT+T E
Sbjct: 61  AAAIVSAPGVAVGSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAVTGTNGKTSTVE 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168
           +            A IG+             +                   V    FE  
Sbjct: 121 LTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRKEGVTHAAFEAS 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNY 227
              L + R  T  +    A  T ++  HL     +E   +AK  +F E +++ G   +  
Sbjct: 181 SHGLSQYR--TEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVDQDGAAVVWA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A   A G++ + S G +     +L +    +    ++++++GK+ EV    
Sbjct: 239 DDPRSVEVIAAVRARGVR-LLSVGAAGE-TIRLVERTPTALGQTLKLEIEGKAREVKLPL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG + A N L+  G+V     ++   +  L    P  GR +R   +        I   Y 
Sbjct: 297 IGAYQAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAP---IYVDYA 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             P  ++AAI  L    PH E R I V G   +     +    +++  LS   I
Sbjct: 354 HTPDGLEAAIEALR---PHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTI 404


>gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
 gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
          Length = 503

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 162/465 (34%), Gaps = 48/465 (10%)

Query: 26  FVNGIS------IDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           ++ GI        DSR I       FFA +G   DG ++I  A++ GA  VV  +     
Sbjct: 13  WIKGICPNGQLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESSDFEW 72

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +   GV  +      +A A         +IIA+TG+ GKT+T + +  ALS + +
Sbjct: 73  NPDWKVDHLGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSRLGR 132

Query: 136 TYACIGSYNNHIG----------------VPLTLARMPVDV---DFGIFELGMSHLGEIR 176
             A IG+    I                   + L R+  D+   +     +  S +G  +
Sbjct: 133 KTAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGIDQ 192

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA+ T     HL     +    +AK  +F G +      +N DD+    L 
Sbjct: 193 GRLNGLTIDIALFTNFTRDHLDYHHDMASYKAAKRRLF-GWKGLKHAVVNLDDAMGIELA 251

Query: 237 AKSHALGIKTIYSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           ++  +    T YS      AD         +  +      ++      ++    IG    
Sbjct: 252 SELKSKMALTGYSI-NGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFNV 310

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  LG++     D D+A+++L+      GR ++           L+   +   P ++
Sbjct: 311 SNVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQM----GGKEAPLVVIDFAHTPDAL 366

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +  +S L  ++    G+   + G     G+       ++ E     ++  V         
Sbjct: 367 EKGLSTLRHVADDRNGKLWCIFGC---GGDRDHGKRPEMGEKAESADVIIVTSDNPRSED 423

Query: 414 LKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            K  +   +          E      L         DV+ V  K 
Sbjct: 424 PKKIMEEIVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKG 468


>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 163/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   A ++GA  ++   D   +I 
Sbjct: 26  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKD--TAIA 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 84  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 143

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 144 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 202 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 261 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 320 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 374 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 429

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 430 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
 gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
          Length = 491

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 182/480 (37%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL  ++   +       V+ +  DSR ++  +AF  IKG  +DGH+FI   V KG
Sbjct: 1   MKLKDLLTKLEYKVVKGSDTIEVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFIRDVVSKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VVV  D+             VDD   AL  ++         K   + ITG+ GKTTT
Sbjct: 61  AVAVVVMEDVEVDEDVTV---VKVDDTRLALACMSADYFGNPAEKLITVGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             M+   L S+      IG+    IG  +T A+      + + E              + 
Sbjct: 118 TYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKMVEQGCKCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +            + T I P H+        ++    K+ + +  +      +N
Sbjct: 178 VSSQGLMLHRVSGFTFDYGIFTNIEPDHIGPNEHKDFDDYLHCKSMLLKQCKHG---IVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            D  F + +           I ++G + + DF+ +  K  ++   + V    K      V
Sbjct: 235 MDADFIDRVLEGHTC----DIETYGVNGDYDFKAQDIKLFTKPGCLCVSYDLKGKMDFPV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H  G     N L  + I S  T DV+    A       + +G+     +++ F  +ID
Sbjct: 291 EIHVPGMFSVYNSLCAIAICSHFTEDVEKIQTA---LENVKVKGRVEIIPISKRFTLMID 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+++ ++ L Q +P    R + V G     G  S+    ++ EV S  +   
Sbjct: 348 --YAHNAMSLESLLTSLKQYNPK---RLVTVFGC---GGNRSKERRFEMGEVSSRLSDFT 399

Query: 404 VWLSG-----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S        +  + D L         +V   +  D +   I ++  DGDV+++  K 
Sbjct: 400 IVTSDNPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNA-KDGDVIILAGKG 458


>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 499

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I 
Sbjct: 26  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKD--TAIA 83

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 84  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 143

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 144 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 202 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 261 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 320 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 373

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 374 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 429

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 430 IMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKG 466


>gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 488

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  +V   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKG 455


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 92/431 (21%), Positives = 166/431 (38%), Gaps = 31/431 (7%)

Query: 25  GFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             ++ I ID+R I A    F A+KG   DGH F+      GA   +V           S+
Sbjct: 23  ALIDQIVIDTRRIYASNALFAALKGQRQDGHSFVS---GSGAKFALVEKHWEGPADGPSL 79

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               VDD L A  ++A + R + +  +IA+ GS GKT  K++L   LSS     +   S+
Sbjct: 80  --LKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDLLRHLLSSSFTVASSPESF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ +GVPL+L       +  I E G SH GE+  L  ++RP   ++T +   HL      
Sbjct: 138 NSQVGVPLSLLGAAKAHEQVIIEAGFSHPGEMARLCKIIRPSHIILTHVGNKHLHTIGSK 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+IA         L           D+ + LL        +   Y +   +         
Sbjct: 198 EQIAQEMCHF--SLSS---------DASWTLLPKDPILSPLPKPYYWDTPQPNLPHASFH 246

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTADVDTAIKALSVFHP 322
           +       + VQ        +   +G     +++ + L    +L       + AL  + P
Sbjct: 247 ENSKA---ITVQFPKGDAHTILRPLGMSYILDLINIGLKAAYLLGVPEKQIVDALKTYQP 303

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +    + ++    Q   T I+E+Y  +P S+  A+      SP  +G++  +   + +  
Sbjct: 304 EPMSTEIWKS---QNGATFINETYCEDPQSLDCALRRFDFHSP--KGKKTLLFSGIKQ-- 356

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
               +    + E +       + L    F +      +     + +  T++        S
Sbjct: 357 -NDPALDARIGEAIGNSMPDTLMLIEPSFQLEHAVKTIAPQTAIRHFSTVEAALKDHAGS 415

Query: 441 LVDGDVVVVKS 451
           +   D+++VK 
Sbjct: 416 MRPEDILIVKG 426


>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 496

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 152/474 (32%), Gaps = 51/474 (10%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G    +     +  ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +
Sbjct: 10  SGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIAVVAERPV 69

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L +          AL   +   R   +  + A+TG+ GKTT   ++     +  
Sbjct: 70  ECAPARLLLA--PSARRAMALAAASFHGRPAERLRMAAVTGTNGKTTVTYLVEACARAAA 127

Query: 135 KTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFL 178
                +G+ +                   +   LA M        + E+    L +    
Sbjct: 128 VPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQ--ER 185

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237
              +R   A  T +   HL     ++   +AK  +F E L   GT  +N  D +   L  
Sbjct: 186 VAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLAD 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        ++ +G       +  + +     +    +    ++ +    +G H  +N+L
Sbjct: 246 QL--GPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLL 303

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G+   L    +   + L+  H   GR +R       G    +   Y     ++   I
Sbjct: 304 CAAGLALGLGLPPEAVARGLAASHGAPGRLERI-----DGRGLSVFVDYAHTDDALARMI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------IDLAEVLSLYNISHVWL----- 406
           + L  +SP    R I V G   +     +          DLA V S    +   L     
Sbjct: 359 AALRGLSP---RRLICVFGCGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIAD 415

Query: 407 -------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +G   L    A                         +GD V+V  K 
Sbjct: 416 VLPGLDRAGKPSLGAARARAGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKG 469


>gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
 gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
          Length = 533

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 168/487 (34%), Gaps = 74/487 (15%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---------- 74
             V+GI +DSR I P + F A  G   DG  +I  AV  GA +V+   +           
Sbjct: 33  TEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVDGGATVVLFEQNDSETILETLLN 92

Query: 75  --------------------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
                                    ++ IPV  +   +  +          +K +++ +T
Sbjct: 93  DNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQVSHIAARF-YGNPTNKMSVVGVT 151

Query: 115 GSVGKTTTKEMLTIALS-SIKKT--YACIGSYNN--------HIGVPLTLARMPVDV--- 160
           G+ GKT+   ++  AL      T   + IG+ N              + + R+  +    
Sbjct: 152 GTNGKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSKLQATENTTPDAIAIQRLAAEYLAR 211

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                 + +S  G ++     V+  IAV T ++  HL   S +E    AK ++F   E+ 
Sbjct: 212 KNYHMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDYHSDMESYFQAKRQLFIR-EEL 270

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW------MEV 274
               +N DD +   L     A+  + I    + KN D  +  W      ++       E+
Sbjct: 271 EAAVINADDEYGRRLLTD-DAVACRKIAFSCEQKNEDLNIENWIVAKNLTFNMRGIQAEL 329

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                + ++    +G+    N+L     +  +  D+D  I AL+      GR + +  + 
Sbjct: 330 HTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDIDKWIVALNAAKAVPGRMQNFTASS 389

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +   Y   P ++   ++ L +   H  G    + G   +     +     +AE
Sbjct: 390 K----ATVVVDYAHTPDALDKTLTSLRE---HCAGELWCIFGCGGDRDNTKRPLMGAVAE 442

Query: 395 VLSLYNISHVWL--------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                  + V +        S   ++++  +  +     Y +       F        D+
Sbjct: 443 ----QKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYIQKRKEAIEFALKHSTPNDI 498

Query: 447 VVV--KS 451
           ++V  K 
Sbjct: 499 ILVAGKG 505


>gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
 gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
          Length = 486

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 165/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+  +   +       ++ +  DSR +     F  I G  +DGH FI   ++KG
Sbjct: 1   MKLSKLLERSEYTLVQGTEDTEISTLVYDSRKVEENSVFVCISGAAFDGHKFIGQVIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A ++VV  D+ A  G   + V   DD   AL +++ A       +   I ITG+ GKTT 
Sbjct: 61  AKVIVVQQDVEAPKG---VTVIRFDDTRKALAEMSAAYFGYPAEELMTIGITGTKGKTTI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELG 168
             M+   L    +    IG+    IG                    R   D       + 
Sbjct: 118 TYMIQSVLEHAGQKTGLIGTIETVIGDERIPSVNTTPESYVIQESFRKMADAGCKNVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +            + T +A  H+       +++    K+ +F+   +     +N
Sbjct: 178 VSSQGLMLHRVSGFTFDYGIFTNLAEDHIGENEHKDMDDYIRCKSLLFQQCRQG---IVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEV 283
            DD + E +  K H   ++   +FG    +D      ++  E  ++ V       +   V
Sbjct: 235 GDDDYVERII-KGHTCSLE---TFGMKPGSDVYADHIERIQEPGYLGVSYDLKGKEEYNV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +   +       + AL+    K     R       G +TL+ 
Sbjct: 291 HVDIPGDFTVYNSLAAISLCRHMGIQKKDVLDALNTIQVKG----RLEIIKTPGEYTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ + +  P    ++I  L      G  +++   ++ EV S      
Sbjct: 347 D-YAHNAMSLESLLTTIRKYDP----KKIYCL--FGCGGNRAKARRYEMGEVSSKLADLT 399

Query: 404 VWLSG-----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S        +  + D L                     +       GD+V++  K 
Sbjct: 400 VVTSDNPRNEEPMDIINDILVGVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKG 458


>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
 gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
          Length = 496

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 153/474 (32%), Gaps = 51/474 (10%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G    +     +  ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +
Sbjct: 10  SGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPV 69

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L +          AL   +   R   +  + A+TG+ GKTT   ++     +  
Sbjct: 70  ECAPARLLLA--PSARRAMALAAASFHGRPAERLRMAAVTGTNGKTTVTYLVEACARAAA 127

Query: 135 KTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFL 178
                +G+ +                   +   LA M        + E+    L +    
Sbjct: 128 VPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQ--ER 185

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237
              +R   A  T +   HL     ++   +AK  +F E L   GT  +N  D +   L  
Sbjct: 186 VAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLAD 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        ++ +G       +  + +     +    +    ++ +    +G H  +N+L
Sbjct: 246 QL--GPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLL 303

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G+   L    D  ++ L+  H   GR +R       G    +   Y     ++   I
Sbjct: 304 CAAGLALGLGLPPDAVVRGLAASHGAPGRLERI-----DGRGLSVFVDYAHTDDALARMI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------IDLAEVLSLYNISHVWL----- 406
           + L  +SP    R I V G   +     +          DLA V S    +   L     
Sbjct: 359 AALRGLSP---RRLICVFGCGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIAD 415

Query: 407 -------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +G   L    A                         +GD V+V  K 
Sbjct: 416 VLPGLDRAGKPALGAARARTGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKG 469


>gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
 gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
          Length = 490

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 172/475 (36%), Gaps = 47/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL          +    V  +S DSR +AP+  FFA+ G   DG  F   A +KG
Sbjct: 1   MRLAELLP--GASLTNDLASLDVAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V   +  ++      PV  V DV  AL + A     R   TI+AITG+ GKT+   
Sbjct: 59  AVAIVA--EGKSAASIEGAPVIAVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAA 116

Query: 125 MLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELG 168
            +    ++     A +G+                 + I +  TL  +    V     E  
Sbjct: 117 FVRQLFAANGFAAASLGTLGVVAPNGSVYGSLTTPDPINLHETLDGLAASGVTHLALEAS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227
              L + R     VR      T ++  HL   + + E  +AK E+F+  L+      ++ 
Sbjct: 177 SHGLTQRRL--DGVRLKAGAFTNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDA 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D      + A   A G+K I++ G    +  +L +    +  + +EV  +G+  ++    
Sbjct: 235 DSDVATEVIAACKARGLK-IFTVGSKGES-LKLLRATPKAAATGIEVAHEGRIYKLELPL 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L+  G+  +     + A+ AL       G   R      +    +  + Y 
Sbjct: 293 AGAFQTSNALVAAGLAIVCGVSAERALTALEHIEGAPG---RLEKVGERNGAPIYVD-YA 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++    VL  + P   GR + V G     G+        + E+ +      V ++
Sbjct: 349 HKPDALE---KVLCALRPAVAGRLLVVFGC---GGDRDAGKRPIMGEIAAKL-ADLVIVT 401

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +           A+      +  V              ++L  GD +++  K 
Sbjct: 402 DDNPRSEDPASIRAAILKGAAGAATVREIGDRASAIRAGVAALNSGDCLLIAGKG 456


>gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
 gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
          Length = 538

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 178/505 (35%), Gaps = 70/505 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL      +        V G+ +DSR +   + F A+ G    G   +  AV  GA 
Sbjct: 15  LKDLL--TGLATFLDQDDIPVAGLVLDSRELVCGDVFVALAGAKQHGLAHVEQAVNNGAC 72

Query: 67  LVVVN--------TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
            V+ +         +      S  +P+  V+++   L +LA           T+I ITG+
Sbjct: 73  AVIFDPAGNGRQLAEAFRCDSSTPVPMIAVENLGLKLGELAARFYCDPSQFMTVIGITGT 132

Query: 117 VGKTTTKEMLTIALSSIK-----------KTYACIGSYNNHIGVPLTLARMPVDVDFGI- 164
            GKT+  + L+  L               K    + +  + + +   LA +  D    + 
Sbjct: 133 NGKTSCSQFLSQMLDDCGIIGTLGWGEWDKLNKTLNTTPDALAIQKILAELLKDKKRTVA 192

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L + R   + V    AV T I+  HL     ++    AK  + +         
Sbjct: 193 MEVSSHGLEQGR--VNGVTFKGAVFTNISRDHLDYHGTMDAYVQAKLALLKQ-PGLAFAA 249

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKS 280
           +N DD + E + A          +S  K K AD             ++    +V+ + + 
Sbjct: 250 VNLDDGYSERVIAAVPESVQLWQFSV-KGKTADSGECVSAENILHKTDGIEFDVRFRDEL 308

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G    +N+L  L ++  +   +  A+K L+   P  GR +R+    +     
Sbjct: 309 QRVQVPLFGDFNVENVLAVLTVMLAMEVSLQEAVKKLAGIKPVNGRMERFGAETD----P 364

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--------EMGELSQSF--HI 390
           +I   Y   P ++     VLS +  H +     V G           +MG++++ +  H+
Sbjct: 365 MIFVDYAHTPDALD---KVLSSLRKHCKQALWVVFGCGGNRDTGKRPQMGKIAEQWADHV 421

Query: 391 DLAEVLSLY--NISHV--WLSGFHVLALKDALP--------RSIHVHYSETMDGLFLFIQ 438
            + +    Y   +  V   L+G    A KD           R   V   +  +     + 
Sbjct: 422 VITDDNPRYENGLDIVNDILAGCSSTA-KDGGSVATDMEPVRPAKVEVIQNREQAIQKVV 480

Query: 439 SSLVDGDVVVV--KS------SNSC 455
           +S    D +V+  K       SN  
Sbjct: 481 ASAAKNDCIVIAGKGHEQYQESNGV 505


>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
 gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
          Length = 509

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 94/494 (19%), Positives = 171/494 (34%), Gaps = 71/494 (14%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + + ++  ++       + GI  DSR I     F A+ G   DGHDFI  A+  GA +++
Sbjct: 4   IFEDVEYKTLKEGKSFVIKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMII 63

Query: 70  VNT--DMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEM 125
                D      +  +    V+ +   L           + K  II ITG+ GKTT+   
Sbjct: 64  SEKNIDTGQYQSASDVTFIQVEGIRKKLGIIASNYYGYPQDKIKIIGITGTNGKTTSSFF 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVD--------------VDFGIFELGM 169
           L   L       A IG+  N I      T+   P                 D+ I E+  
Sbjct: 124 LENILE----KTARIGTTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVS- 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE----KTGTIFL 225
           SH  EI     +++   A+ T +   HL     +E   +AK +IF  L      TG+  +
Sbjct: 179 SHALEI-GRVDMLKFDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------- 278
           N DD +   +  +++A    +I    K+++AD         +    +++ L+        
Sbjct: 238 NIDDEYGAKIYLENNAKNFISISV--KNEDADIWGDILNYTNNGMKVKINLKNYLEKYGK 295

Query: 279 ------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                          +G +   N+L  +     L  ++D  +K L       G   R+  
Sbjct: 296 NLKNTENVYRFEIDLVGEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPG---RFET 352

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N     ++ + +      +      L QI+ +   R I + G     G+        +
Sbjct: 353 IKNDLDVRIVVD-FAHTDDGLLNVGKTLKQITDN---RVITIFGA---GGDRDHEKRPKM 405

Query: 393 AEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHY-------SETMDGLFLFIQS 439
           A+    ++   + L+  +         L D     I   +           +    +   
Sbjct: 406 AQAAIKFS-DFIILTSDNPRTENPTKILADIEKGLIGEKFPFNRYLIIADRERAIKYGTR 464

Query: 440 SLVDGDVVVV--KS 451
            L  GD +++  K 
Sbjct: 465 MLEKGDSLLIAGKG 478


>gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Acidovorax ebreus TPSY]
 gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY]
          Length = 501

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 145/437 (33%), Gaps = 42/437 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T   L +A+       + Q     +  DSR I P + F A  G   DG   +  A
Sbjct: 1   MNALHTLTTLQEAVD-----WLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
           V +GA   +V  + V         +  +  +  A   +A         +  ++A+TG+ G
Sbjct: 56  VARGAAACLVECEGVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNG 115

Query: 119 KTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLARMP-------------- 157
           KT+T   L  AL+ + K         A +G+    +   L    M               
Sbjct: 116 KTSTAWWLADALNQLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQF 175

Query: 158 --VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                     E     L E R      R H+A+ T     HL    G+     AK  +F+
Sbjct: 176 AEAGHRACAIEASSIGLAEHRL--DGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD 233

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +N DD     L A+     +  ++S      A  Q +            V 
Sbjct: 234 W-PGLRASVVNVDDPQGAALHAELQGSDL-DLWSVSLQGPARLQAKHIVHTGAGLAFTVA 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    IG +   N+L  +  +  L   +  A++A +   P  GR ++   A  
Sbjct: 292 EGAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAA-- 349

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                L+   Y   P ++  A++ L  ++    GR   V G         +     +A+ 
Sbjct: 350 --GQPLVAVDYAHTPDALHQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQ- 406

Query: 396 LSLYNISHVWLSGFHVL 412
                   V ++  +  
Sbjct: 407 ---READEVIVTSDNPR 420


>gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 478

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 164/449 (36%), Gaps = 32/449 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR++ P   F A+ G   DG  FI  A+  GA  V+V       +    +
Sbjct: 9   DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVEVPP-QV 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +    +       +A A        + A+TG+ GKT+T E     ++ +    A IG+ 
Sbjct: 68  ALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGTL 127

Query: 144 N---------------NHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                           +  G+   LAR+    +     E     L + R     V+   A
Sbjct: 128 GIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRL--DGVKLMAA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   HL   + ++  A AK  +F   L +  T  +N D              GI T
Sbjct: 186 AFTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI-T 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  +G++     +L   +  ++   +++++ G+++ +     G   A N L  LG+    
Sbjct: 245 VLGYGRAARD-LRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALAC 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            AD  TA++AL       GR ++     +     +    Y   P +++   +VL  + PH
Sbjct: 304 GADPVTALEALGSLEGVHGRLQKVAARAHGAPVYV---DYAHTPDALE---TVLKALRPH 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              R + V G   +     +     +   +     ++          A++ A+  +    
Sbjct: 358 ASRRLVVVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAG 417

Query: 426 Y-SETMDGLFLFIQSSLVDGDVVVV--KS 451
                         S L  GDV+V+  K 
Sbjct: 418 IEIGDRRDAIRAAVSGLQKGDVLVIAGKG 446


>gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus YJ016]
 gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016]
          Length = 515

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 158/458 (34%), Gaps = 44/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79
              V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G    
Sbjct: 44  DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGLVRY 103

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A 
Sbjct: 104 QQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAV 163

Query: 140 IGSYNNH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+  N                + +  TLA +             SH G ++     ++ 
Sbjct: 164 MGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSH-GLVQGRVKALQF 222

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V T ++  HL     +E  A AK  +F    +     +N DD        +      
Sbjct: 223 AAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE-HQCQHAIINLDDEVGAQWFQELQQGVG 281

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +++    S  A               +E         +    IG   A N+L+ L  + 
Sbjct: 282 VSLFPQDASVKA-LWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLLALATLL 340

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    + + +   P  GR + ++              Y   P +++ A+  L    
Sbjct: 341 ALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVV----DYAHTPDALEKALQALR--- 393

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
            H  G   A+ G   +  +  +    ++AE L+     HV L+  +  +         + 
Sbjct: 394 VHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLA----DHVVLTDDNPRSEDPAMIVQDML 449

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L R               +   +    D++++  K 
Sbjct: 450 AGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 487


>gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 495

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 152/457 (33%), Gaps = 31/457 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA- 76
            + +     V+G+ +DSR++AP +AF AI G    G  F+  A   GA  V+        
Sbjct: 13  DVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPAPDG 72

Query: 77  -SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
             +   +I V G+   LG +       R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 73  LPVPVDAIAVLGLRARLGVMAD-QFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 132 PTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   +AV T +   HL     + +  +AKA++F          +N DD F   L A    
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR-PGLKAAVVNLDDGFGRTLFASRDP 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      S     +A    +  +         + +QG+   V    +G     N+L   G
Sbjct: 251 VLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAG 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L          L    P  GR  R           L+   Y   P +++ A+S L 
Sbjct: 311 ALWALDIAPAQIATVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSSLR 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD---- 416
               H + R I V G   E     +     +AE+   +  ++     G    A+      
Sbjct: 368 S---HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILR 424

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              R                  +     D+V++  K 
Sbjct: 425 GFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461


>gi|95930730|ref|ZP_01313463.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133210|gb|EAT14876.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 456

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 150/414 (36%), Gaps = 45/414 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V     L +PV    ++L  L +L            IA+ G+ GKTTT  M+
Sbjct: 73  AVSSDNPEVVEAHRLLVPVIPRAEMLAELMRLKYG---------IAVAGTHGKTTTTSMV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS         G  +    V   L  +  +   G  E  +    E       + P I
Sbjct: 124 ATLLSH--------GGIDPTAVVGGRLNALGSNAKLGQGEFMVVEADESDGSFLKLTPTI 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I   HL  +SG++EI     +    +   G   L  DD+  + L  +      K 
Sbjct: 176 AVVTNIDEDHLDYYSGMDEIRGVFLDFINKIPFYGLAVLCLDDANIQTLLPQVQ----KR 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             ++G +  ADF   + +  +  +   V  + + +  +     G H   N L +L +   
Sbjct: 232 YVTYGLTPQADFSATEIEHRAGGTEFTVHFRQEKLGRIRLEMPGRHNVLNALASLAVARE 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--- 362
           L   + T       F    G  +R++  L      ++ + Y  +PA +KA +S       
Sbjct: 292 LDVPMKTI---CEGFESFAGVQRRFQIKL--DDEVMVVDDYGHHPAEIKATLSAARNGWD 346

Query: 363 ------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                   PH   R  A+  D       +  +  D+  V+ +Y  S   + G     L  
Sbjct: 347 RRVVVIFQPHRYSRTQALFDDFV-----TAFYQADVLLVMDVYAASEAPIEGVCGEDLAK 401

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           A+    H  V Y  + + +   +   L   D+V+   + S   +++   L+E  
Sbjct: 402 AIAGHGHRQVTYCNSEEAVVKQVLDVLKPDDIVITLGAGSV--WKVGETLIEHL 453


>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
 gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
          Length = 496

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 169/458 (36%), Gaps = 43/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-S 82
           +  V GIS +S +    + F  + G   DG +F   A++ GA   +++            
Sbjct: 23  EKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWSSAIEAGAIAAIISPAAALQYPPTGD 82

Query: 83  IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             V  V+DV+    ++A         +  +I +TG+ GKTTT  ++   LS  +   A +
Sbjct: 83  AYVIQVEDVVSVCAEIAAAFYGYPARQMKMIGVTGTNGKTTTTHLIEFFLSQCQYPTALL 142

Query: 141 GSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+           A                 +     +G+ E+    L +          
Sbjct: 143 GTLYTRWAGYEQTAVHTTPFAAQLQEQLAQALKAGSQYGVMEVSSHALAQ--RRVQECPF 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV T +   HL     +E+  +AKA++F      G   +N DD + + L     +L  
Sbjct: 201 EVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAEYLKGKAIINLDDPYGKRL---IDSLSR 257

Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++S+  S  +A+F  R     +      +      +      +G +   N+L  +G V
Sbjct: 258 EKVWSYSVSDSSANFYTRDLCYEANGVSGILHTPIGEVAFYSPLVGQYNIANLLAAVGAV 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D+   ++ L +F    GR +R   +  Q    ++D  Y   P S++   ++L   
Sbjct: 318 VSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDISVIVD--YAHTPDSLE---NLLKAA 372

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALK 415
            P  EGR I V G     G+  ++    + ++ +      V  S           +  + 
Sbjct: 373 RPFIEGRMICVFGC---GGDRDRTKRPKMGKIAAELADVAVVTSDNPRTEDPQQILKDIL 429

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +P S+            L   +    GD V++  K 
Sbjct: 430 AGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKG 467


>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 511

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 157/452 (34%), Gaps = 38/452 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G++ DSR++   E FFA+ G + DG  +I  A+  GA  VV             +
Sbjct: 45  EIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQAIANGAVAVV---GEQFPDSDHRV 101

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V +   AL   A     R  ATI A+TG+ GKT+           +    A IG+ 
Sbjct: 102 ALVRVANPRRALALAAARMFPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGFAAASIGTI 161

Query: 144 N-----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L R         V     E     L + R     VR   A
Sbjct: 162 GLVTPQRSVYGSLTTPDPIALHREIDQIAGEGVTHLALEASSHGLDQFRL--DGVRVSAA 219

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  H+     +    +AK  +F  L    G   ++ D    E + A + A G++ 
Sbjct: 220 GFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGAAVISADHEHSEAVIAAARARGLR- 278

Query: 247 IYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + G++ N     +L           + V+ +G+   +    +G    +N L+  G+  
Sbjct: 279 LITVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRERGLRLPLVGEFQIENALVAAGLAI 338

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D +      +     EG   R     ++    +  + Y   P ++  A+  L    
Sbjct: 339 GTGGDAEQV---FAALQHLEGAKGRLELVGDRNGAPIFVD-YAHKPDALAKALQALR--- 391

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
           P+ + + I V G   +     +     +A  L+   I    +        +         
Sbjct: 392 PYAKRKLIVVFGAGGDRDAGKRPLMGAIATGLADSVIVTDDNPRSEDPAAIRAAIMAAAG 451

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V   +  + +   I  +L  GD +++  K 
Sbjct: 452 GAVEIGDRAEAIRTAI-GALQSGDALLIAGKG 482


>gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas sp. SN2]
          Length = 530

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 170/507 (33%), Gaps = 83/507 (16%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           +A+        P   + G+++DSR +  + AF A+KG   DG DFI  A+  GA +++  
Sbjct: 11  RALLAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQ 70

Query: 72  TDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           TD   + G       S+ I ++ +  +L AL           K   +A+TG+ GKT+T +
Sbjct: 71  TDDSQAHGQMEMRDHSVIISLYQLPSMLSALAAAF-YDYPALKMMTVAVTGTNGKTSTVQ 129

Query: 125 MLTIALSSIKKTYACIGSYNNH---------------------IGVPLTLAR-MPVDVDF 162
           +LT    ++    A +G+  +                      I +   LA  +  +V  
Sbjct: 130 LLTQLKDALGTRSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRH 189

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE     L + R     V+  IAV T +   HL     +EE A AK  + +       
Sbjct: 190 TAFEASSHALVQGRL--SQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQ-PGLEA 246

Query: 223 IFLNYDDSFFELLKAKSHALGIK---------------TIYSFGKSKNADF--------- 258
           + LN +DS  +       A   K                +++ G     D          
Sbjct: 247 VVLNVNDSESQNWADYLDANAAKDGSSEEIAISKPRVTRVWT-GFEPTDDVLATHKQPQD 305

Query: 259 ---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                      S     ++     +  +     G     N L  +  +       +  ++
Sbjct: 306 RHCFATNVSYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVVR 365

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++   P  GR + +      G    +   Y   P +++    VL     H  G+   V 
Sbjct: 366 VVNGLQPVPGRMEVFPV----GGSASVIVDYAHTPDALE---QVLKSAKTHTAGKVWCVF 418

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHY 426
           G   +  +  +          +  +   + ++  +  +         +K  L R      
Sbjct: 419 GCGGDRDKGKRPLMG----AAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVE 474

Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451
               +    +   S  + D+++V  K 
Sbjct: 475 EADRESAIRYCLDSADENDIIIVAGKG 501


>gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Bradyrhizobium sp. ORS278]
          Length = 486

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 163/477 (34%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
              HDLL    G   G+ P      V+G++ DSR++ P + FFA+ G   DG  FI  AV
Sbjct: 1   MKLHDLL----GDQAGLDPRVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFIAAAV 56

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
                  +      A  G L +P   + +   AL   A     R  ATI A+TG+ GKT+
Sbjct: 57  A---AGAIAVAGHEAPAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAVTGTSGKTS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVD-----VDFGIF 165
                     S+    A IG+                  P+ L R   +     V    F
Sbjct: 114 VAAFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAF 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIF 224
           E     L + R     VR      T ++  H+     +    +AK  +F  L    G   
Sbjct: 174 EASSHGLDQYRL--DGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVPPGGPAV 231

Query: 225 LNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           ++ D      + A + A G++  T+ + G    A  +L           +E+Q  G+   
Sbjct: 232 ISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQHCGRITF 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G    +N L+  G+     +D     +AL      +G   R           + 
Sbjct: 292 LRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKG---RLELVGEHNGAPIF 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P ++  A+  L    P+ + + + V G   +     +    ++A         
Sbjct: 349 ID-YAHKPDALAKALHALR---PYAQRKLVVVFGAGGDRDSGKRPLMGEIA----AAGAD 400

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +          L  +                 S L  GD +V+  K 
Sbjct: 401 RVIVTDDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKG 457


>gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 461

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 92/434 (21%), Positives = 161/434 (37%), Gaps = 51/434 (11%)

Query: 56  FILHA---VQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           FI HA   +++ A +VVV+T +      L       +PV    DVL  L           
Sbjct: 56  FIGHAACQIER-AEVVVVSTAIHPDNPELVEAHRRQVPVIHRSDVLAWLMNRHKG----- 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML+   S            +  I V   +  +  +   G  +
Sbjct: 110 ----IAVAGAHGKTTTSSMLSCITSDCG--------LDPTIVVGGIVNNLGSNAASGKSD 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             ++   E         P+IAV+T I   HL ++   E I  A A+    +++ G   L 
Sbjct: 158 WVVAEADESDGSFLKFNPYIAVVTNIEDDHLDHYGSQENIQKAFAQFVSQIKEDGCAVLC 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           YD+     +   +     K + S+G  S++AD+Q +     ++ +  +V  QG+++   H
Sbjct: 218 YDNDRVRTIGEAT----DKRVISYGIDSQDADYQAKNIIYGTDGTHFDVVYQGETIGQGH 273

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I G H   N L  +     L  ++   + +L  F    G  +R+          ++D+
Sbjct: 274 LIIPGRHNVLNSLGAIAAARELGLELPDILTSLEKFS---GAKRRFETKGKADGIWVVDD 330

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSF-HIDLAEVLS 397
            Y  +P  ++A +    Q  P    R I V            + E + +F   D   V  
Sbjct: 331 -YAHHPTEIQATLKAARQTHPE---RLIVVFQPHRYTRTQLLLDEFAVAFKDADKLIVTD 386

Query: 398 LYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y  S   + G     L D +       V Y      +   ++     GD+++   +   
Sbjct: 387 IYAASEDPIPGVSGEMLADKVRETTGQQVEYLPDQPTILDHLEHEAQSGDLIMTIGAGDI 446

Query: 456 -GF-YRLINLLLEE 467
                 L+  L   
Sbjct: 447 YKLGEHLVQALERR 460


>gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 158/458 (34%), Gaps = 44/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79
              V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G    
Sbjct: 22  DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGLVRY 81

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A 
Sbjct: 82  QQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+  N                + +  TLA +             SH G ++     ++ 
Sbjct: 142 MGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSH-GLVQGRVKALQF 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V T ++  HL     +E  A AK  +F    +     +N DD        +      
Sbjct: 201 AAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE-HQCQHAIINLDDEVGAQWFQELQQGVG 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +++    S  A               +E         +    IG   A N+L+ L  + 
Sbjct: 260 VSLFPQDASVKA-LWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLLALATLL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    + + +   P  GR + ++              Y   P +++ A+  L    
Sbjct: 319 ALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVV----DYAHTPDALEKALQALR--- 371

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
            H  G   A+ G   +  +  +    ++AE L+     HV L+  +  +         + 
Sbjct: 372 VHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLA----DHVVLTDDNPRSEDPAMIVQDML 427

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L R               +   +    D++++  K 
Sbjct: 428 AGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 465


>gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 495

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 166/477 (34%), Gaps = 44/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I G          V GI  +S +    + F  I G   DG +F   A+  G
Sbjct: 1   MNLRELLAVIDGVEYQG-KDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAG 59

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           A   +++    +         V     +     ++          K  I+ +TG+ GKTT
Sbjct: 60  AVAAIISPQAASKTPPTSDALVITATSLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIF 165
           T  ++   L+      A +G+          +A                 +      GI 
Sbjct: 120 TTHLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQAVDAGCQLGIM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R         ++V T +   HL     +E+   AKA +F      G   +
Sbjct: 180 EVSSHSLVQDR--VFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQGRAVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD + + L   +  L  + ++++  +  +ADF +             +     +    
Sbjct: 238 NIDDHYGQRL---TIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFS 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G +  +N+L  +  V  L  D++T +  +  F    GR +R +   +Q    ++D 
Sbjct: 295 SPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDISVIVD- 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++   ++L    P   GR I V G     G+  ++    +  + +      V
Sbjct: 354 -YAHTPDSLE---NLLKAARPFIPGRMICVFGC---GGDRDKTKRPKMGRIAADLADVVV 406

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLF-----LFIQSSL---VDGDVVVV--KS 451
             S        DA+   I     E +  L        I +++     GD V++  K 
Sbjct: 407 VTSDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKG 463


>gi|297250431|ref|ZP_06934038.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
 gi|296838889|gb|EFH22827.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
          Length = 469

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKS 280
             D      +  K      K   ++G    AD      +    Q    V +Q      +S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQES 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLAAARGAYPD----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 449 NMGAGSIN--RVPAALLE 464


>gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
 gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
          Length = 501

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 146/437 (33%), Gaps = 42/437 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T   L +A+       + Q     +  DSR I P + F A  G   DG   +  A
Sbjct: 1   MNALHTLTTLQEAVD-----WLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
           V +GA   +V  + V         +  +  +  A   +A         +  ++A+TG+ G
Sbjct: 56  VARGAAACLVECEGVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNG 115

Query: 119 KTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLARMP-------------- 157
           KT+T   L  AL+ + K         A +G+    +   L    M               
Sbjct: 116 KTSTAWWLADALNQLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQF 175

Query: 158 --VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                     E     L E R      R H+A+ T     HL    G+     AK  +F+
Sbjct: 176 AEAGHRACAIEASSIGLAEHRL--DGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD 233

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +N DD     L A+     +  ++S      A  Q +          + V 
Sbjct: 234 W-PGLRAAVVNVDDPQGAALHAELQGSDL-DLWSISLQGPARLQAKHIVHTGAGLALTVA 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    IG +   N+L  +  +  L   +  A++A +   P  GR ++   A  
Sbjct: 292 EGAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAA-- 349

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                L+   Y   P ++  A++ L  ++    GR   V G         +     +A+ 
Sbjct: 350 --GQPLVAVDYAHTPDALHQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQ- 406

Query: 396 LSLYNISHVWLSGFHVL 412
                   V ++  +  
Sbjct: 407 ---READEVIVTSDNPR 420


>gi|254673375|emb|CBA08647.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha275]
          Length = 429

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 21  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 68

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 69  --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 121

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 122 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 176

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 177 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 232

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 233 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 292

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 293 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 348

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 349 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 408

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 409 NMGAGSIN--RVPAALLE 424


>gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
 gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
          Length = 532

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 163/511 (31%), Gaps = 73/511 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-----------APQEAFFAIKGP 49
           M    +  + ++AI+  +     +  +N +  DSR +               AFFA+ G 
Sbjct: 1   MEYTKSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGI 60

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSK 107
           H DG  FI  A++ GA  +      + +     I    V+DV   ++K++          
Sbjct: 61  HTDGKKFINSAIENGAVCIF-YEGDLNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----------------VP 150
             +I +TG+ GK++T   +   L+   K      +    I                  V 
Sbjct: 120 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQ 179

Query: 151 LTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           L LA+M      + + E     L         V     V   +   HL     IE+    
Sbjct: 180 LRLAQMRDSGCSYAVVEASSHGLSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 239

Query: 210 KAEIFEGLEKTG------TIFLNYDDSFFELLKAKSHALGIKTIYSFG--------KSKN 255
           KA +F  L+K           +NY+D         +     K +Y F           + 
Sbjct: 240 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQ----KNVYPFSTELKDLKKIEEY 295

Query: 256 ADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLM-TLGIVSILTADVDT 312
                +  ++ S      +      K         G    +N+L   L +  I   D+  
Sbjct: 296 KGLFAKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIAC 355

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            I+ L +  P +G  +       Q F  LID  Y   P+S       + +      G+ I
Sbjct: 356 IIEKLPLVKPVKG--RMMLIDEGQDFEVLID--YAHTPSSFMTIFPSIKERIKKSGGKVI 411

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-------PR 420
           ++ G     GE       +   + +LY+   V L+     G   + L + +        R
Sbjct: 412 SLFGS---GGERDVKKRPEQGRIAALYS-DIVILADEDPRGEDSVELLEMIAAGCPEKKR 467

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +              S     D V++  
Sbjct: 468 GEELFIIPDRPSAIKKAFSLAGKNDAVLLLG 498


>gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
          Length = 461

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 162/427 (37%), Gaps = 53/427 (12%)

Query: 48  GPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G   + GHD    A  +GA LVVV++ +  +           IPV    D+L  L     
Sbjct: 50  GARVFIGHD---AANIRGADLVVVSSAIPPTNPEYVEAIKNDIPVIHRADMLSTLMA--- 103

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVD 159
                     IA++G+ GKTTT  M+++ L          IG   N IG   TL +    
Sbjct: 104 ------TRKGIAVSGAHGKTTTTSMISLVLEKGGMSPTVVIGGELNDIGGNATLGKG--- 154

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + E   S    ++       P+IAV+T I   H+ ++  +E +  A  +    L+K
Sbjct: 155 -EYMVAEADESDGSFLKLT-----PYIAVVTNIENDHMDHYKDMESMKEAYRKFIMNLKK 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   L  D+     +  +         +++G +  AD+  +        S  EV  + +
Sbjct: 209 DGFALLGTDNEHVRDVMKRVDV----PYFTYGINYPADYMPKNIHIEGVDSRFEVYYRNE 264

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + E+  H  G H   N    + +   L   ++    A        G  +R++     G 
Sbjct: 265 RLGELELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGA---LQAFRGVQRRFQLIGEVGG 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---- 394
             ++D+ Y  +P  +KA +     ++P+   +  AV          ++    +       
Sbjct: 322 VRVVDD-YAHHPTEIKATLKAAKLLNPN---KLYAVF--QPHRYTRTKMLAEEFGNAFED 375

Query: 395 -----VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                +  LY+     + G   + + +AL R   +V Y +  + +  ++   +V GD V+
Sbjct: 376 ADEVIITRLYSAGEAPIPGVSSMLIVEALKRSGKNVTYIDDKEKIPDYLAERVVPGDFVL 435

Query: 449 VKSSNSC 455
              +   
Sbjct: 436 TIGAGDI 442


>gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 489

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 165/475 (34%), Gaps = 47/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL A+    +   P+  ++ I+ DSR I P   F A+ G   DG  FI  AVQ GA 
Sbjct: 5   LSTLLAAVGLPILPENPE--ISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+  TD     G  + P+    +   AL  +A          + AITG+ GKT+T + +
Sbjct: 63  AVLAPTDTQWPTGVPTCPLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFI 122

Query: 127 TIALSSIKKTYACIGSYN-------------NHIGVPLTLARMPVDVDFG-----IFELG 168
               +      A IG+                    P+ LA     +          E  
Sbjct: 123 RQIWALQGFKAAAIGTLGLTGAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEAS 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNY 227
              L + R     +    A  T +   HL     IE   +AK ++F+  L +      N 
Sbjct: 183 SHGLEQGRL--DGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D     L   ++ A            +    +L           + ++  G +  V+   
Sbjct: 241 DMDAQTLQAIRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPI 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+L+ + + +   A++   +  L       GR +R     N     +    Y 
Sbjct: 301 PGRFQADNVLLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACAYV---DYA 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++     +L+ + PH  G+ + VLG   +     +     + +   +       ++
Sbjct: 358 HTPDALA---RLLASLRPHARGKLVVVLGAGGDRDSGKRPL---MGQEA-IKGADIAIIT 410

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +K   P+++ +  ++    +   + S L   DV+VV  K 
Sbjct: 411 DDNPRTENPASIRAEIKAGAPQALEI--ADRKQAIAEAL-SMLKADDVLVVAGKG 462


>gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
 gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
          Length = 503

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 162/454 (35%), Gaps = 40/454 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR +   +AF A  G   DG  F+  A+  GA   +V  + V + G     +  +  +
Sbjct: 25  TDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEAEGVDAHGFDDARIGALPGL 84

Query: 92  LGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN---- 145
             A   +A A       +  ++A TG+ GKT+T      ALS + +    +G+       
Sbjct: 85  KAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGVVGTLGIGEPP 144

Query: 146 -------------HIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                            P+TL    R   D  F    +  S +G +      +R  +A+ 
Sbjct: 145 LPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRLAALRIEVALF 204

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T     HL     ++   +AK  +F G        +N DD+    L A+S A  +  +++
Sbjct: 205 TNFTRDHLDYHGSMDAYWAAKRVLF-GWPGLKAAAVNLDDAQGAEL-ARSLAGHVPELWT 262

Query: 250 FGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +   ++    + R            +   G ++ V    IG + A N+L  +G +  L  
Sbjct: 263 YSLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLLAVIGGLRALGV 322

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +  A++ +    P  GR ++            +   Y   P +++ A+  L  ++    
Sbjct: 323 PLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKALGALRPLAAARG 382

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSI 422
           GR + V G         +     +AE L+      V  +  +         L D      
Sbjct: 383 GRLLCVFGCGGNRDASKRPLMAAVAERLA----DRVIATSDNPRDEAPAAILVDVAAGFA 438

Query: 423 HVHYSETMDGLFLFIQSSLVDG---DVVVV--KS 451
                E ++     I  ++      DV+++  K 
Sbjct: 439 APAAVEMIEDRRAAIARAIGSAEARDVLLIAGKG 472


>gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 491

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 160/463 (34%), Gaps = 54/463 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL-VVVNTDMVASIGSLS 82
              +  I  DS+    +  F A+ G   DGH +I +A   GA + V+   + +    ++ 
Sbjct: 20  DLEIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVE 79

Query: 83  IPV----FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           I        V+D   AL  ++         + TI+ ITG+ GKTT    +   L +   +
Sbjct: 80  IIQNSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDIS 139

Query: 137 YACIGSYNNHIGVPL--TLARMPVDVDFG------------IFELGMSHLGEIRFLTHLV 182
              IG+   +       T+   P   +              +  + +S  G +    H +
Sbjct: 140 CGVIGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGI 199

Query: 183 RPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
               A+ T ++  H+        E     K+ +F     +    +N DD   +++  KS 
Sbjct: 200 EFDYAIFTNLSHDHIGEKEHPTFEHYRECKSMLFAM---SKYSIINIDDENSKVMIEKSK 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   ++    ++DFQ +     S  S M    +    + V +  G     N L T+
Sbjct: 257 DYK-----TYSIDSSSDFQAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTI 311

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L     +    L   H K     R +         +I + Y  N  S++  +  +
Sbjct: 312 MLCEQLGLSYQSIYTGLEKAHVKG----RLQVIDGFTDIKVIID-YAHNEVSLENVLQTV 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416
            ++ P    R I + G    +G  SQ+   +LA V S Y    +  S      +   + D
Sbjct: 367 KELKPK---RLIVLFGS---VGTRSQNRREELATVASKYCDVIIVTSDNPDTENPQKIID 420

Query: 417 AL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +       +  + +                  GDV+V+  K 
Sbjct: 421 EIVSHISQDKKKYTYCYADRAVAIQKAIEMSQKGDVIVLAGKG 463


>gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
 gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
          Length = 500

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 174/489 (35%), Gaps = 58/489 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL                N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWFIYSGDQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDL 56

Query: 64  GAGLVVVNTDMVASIG------------SLSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
           GA  V+V+TD     G             +            A  +  +A +     +  
Sbjct: 57  GAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLG 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPV 158
           II ITG+ GKT+T +++   ++S+++  A +G+  N +   L           TL R   
Sbjct: 117 IIGITGTNGKTSTSQLIAQLVTSLRRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 176

Query: 159 DVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           + +     +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F 
Sbjct: 177 EFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME 273
                G   LN DD        +   +  + I+ F     + A F  +  +   +     
Sbjct: 237 F-STLGHGLLNLDDPVGASWLIELKDMAAQ-IWGFSIEGHQAAAFYTKNTQFDDQGVSTT 294

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +       ++    +G     N+L  L  + +   D++   + +    P  GR +R+  A
Sbjct: 295 LVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERFTTA 354

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N    TL+ + Y   P +++ A++ L +   H  G    V G     G+  +     + 
Sbjct: 355 DN---ITLVVD-YAHTPDAIEQALTALRR---HCAGDLWCVFGC---GGDRDKGKRPLMG 404

Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                Y    + ++  +  +         +   L                  +      G
Sbjct: 405 RAAEQY-ADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSG 463

Query: 445 DVVVV--KS 451
           D++++  K 
Sbjct: 464 DLILLAGKG 472


>gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
 gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
          Length = 498

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 143/455 (31%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+ +DSR++ P  AF AI G    G  F+  A   GA  ++       +      
Sbjct: 16  DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASAIL-FEPPAPAELPAPA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V  +   +  +             ++ +TG+ GKT+T ++L  A   +      IG
Sbjct: 75  DAIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIG 134

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    +   +               L     D       + +S     +     V   +A
Sbjct: 135 TLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +    +AKA +F          +N DD+F   L A   A      
Sbjct: 195 VFTNLTRDHLDYHGDMASYGAAKARLFHR-PGLKAAVVNLDDAFGRQLFAGLPAGVQPIG 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S   + +A  +    +        E+ + G+   V    +G     N+L   G +    
Sbjct: 254 LSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +    + LS   P  GR  R      +     +   Y   P ++K A+  L     H 
Sbjct: 314 QPLPRIAEVLSALQPIRGRMNRL---GGEDGLPTVVVDYAHTPDALKQALDSLHG---HL 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALK----DAL 418
            G    V G   E     +     +AE L+    + V ++     G     +        
Sbjct: 368 HGALFCVFGCGGERDTGKRPQMAAIAERLA----NQVIVTDDNPRGEDGDVIVADILAGF 423

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V    +              GD++++  K 
Sbjct: 424 QNADAVTVQRSRARAIGLAVKRAGAGDIILIAGKG 458


>gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
 gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 147/399 (36%), Gaps = 40/399 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV    ++L  L +             +A+ G+ GKTTT  +    L+         G 
Sbjct: 95  IPVISRAEMLAELMRFRYG---------VAVAGTHGKTTTTSLTASILAE--------GG 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS- 201
            +    +   L  +  +   G  E  ++   E       ++P IAV+T I   H+  +  
Sbjct: 138 LDPTFVIGGRLNSVGANAQLGQGEYLVAEADESDASFLHLQPMIAVVTNIDQDHMGTYGN 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
               +  A  E    +   G   L  +D     +  +      K   ++G+ +  D +  
Sbjct: 198 DFGRLKDAFVEFLHHVPFYGAAVLCAEDPGVRDILPRLS----KPYRTYGEREGVDIRAV 253

Query: 262 KWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             ++   QS   V  QG + +E+  +  GYH   N L  +G+ + L        +AL+ F
Sbjct: 254 GIQRLGLQSRFSVLRQGAEPLEITLNLPGYHNILNALAAIGVATELGVADAVIQRALAGF 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R +   C           + Y  +P+ + A +       P  + R + V      
Sbjct: 314 RGIGRRFQINACLNFGDGEITFVDDYGHHPSELAATLDSARNAWP--DRRLVVVF--QPH 369

Query: 381 MGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSET 429
               ++    D  +VLS  ++     V+ +G   +A  D   L R+I V       ++ET
Sbjct: 370 RYTRTRDLFEDFVQVLSRVDVLILLEVYSAGEAPIAGADGRSLSRAIRVRGQIDPIFAET 429

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + +F  + + L  GDVV+   + S G   L   L E  
Sbjct: 430 PEEVFDILPNVLKPGDVVMTLGAGSVGV--LAQQLPERL 466


>gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
 gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
          Length = 483

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 161/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81
            G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +        
Sbjct: 17  DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            IP   +  +   L ++A            +  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  GIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136

Query: 140 IGSYNN-----------HIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVR 183
           IG+                   L L R+      G       E+    L + R     + 
Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEGGIKQVCMEVSSHALSQHR--VDSLE 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ T +   HL     ++   +AK+ +FE  E      +N DD F +L+        
Sbjct: 195 FSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFERAELQ-WAIINQDDDFQDLMSNVLKTHV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   ++G  +N D +  +W      + +EV+       +    +G     N L     +
Sbjct: 254 KK--VTYGMHQNCDVKALQWNMDITGTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSL 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +  ++ ++      GR +     + Q  + L+D  Y   P +++  +  L QI
Sbjct: 312 LASGYNPEKVVQVMAELKAAPGRME----IVAQSPYVLVD--YAHTPDALENVLITLKQI 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVL--ALK 415
               +GR   V G     G+  ++    + +  S+Y  + V  S         ++   + 
Sbjct: 366 K---KGRLWVVFGC---GGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIA 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +P S  V      +    +        D++++  K 
Sbjct: 420 CGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457


>gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
 gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
          Length = 496

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 171/480 (35%), Gaps = 47/480 (9%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL---- 58
               +LL  +    +   ++    V GI  +S +    + F  + G   DG +F      
Sbjct: 1   MKLRELLATVDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFWPSAIA 60

Query: 59  ----------HAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                      AV+K       +V+ + +M  +  +++   +G       L  +      
Sbjct: 61  SGAIAAIVSPQAVEKNPPSDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLVGVTGTNGK 120

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFG 163
            +   +I    +  + +T  M T+             +    + +   LA+      +FG
Sbjct: 121 TTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQAVNAGCEFG 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L + R L       + V + +   HL   S +E+  +AKA +F      G  
Sbjct: 181 VMEVSSHALAQGRVL--GCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPDYLKGRA 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD++ + L     AL  + ++S+  +  +AD  +             +      + 
Sbjct: 239 IINADDTYGQRL---IKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPEGDVS 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G +  +N+L ++G V  L  D+     A+  F    GR +R +   +Q    ++
Sbjct: 296 FRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQINPDQDISVIV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y   P S++   ++L    P   GR I V G     G+  ++    + ++ +     
Sbjct: 356 D--YAHTPDSLE---NLLKAARPFIPGRMICVFGC---GGDRDRTKRPKMGKIAAEL-AD 406

Query: 403 HVWLSG-----FHVLALKDALPRSIHVHYSETM--DGLFLFIQSSL--VDGDVVVV--KS 451
             +++           + D +   I      T+  D       + L    GD V++  K 
Sbjct: 407 LAFVTSDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 165/388 (42%), Gaps = 17/388 (4%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           + +  +    VDD +  L KLA           I ITGS GKT  KE L   LS   +  
Sbjct: 1   MDNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCV 60

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               S+N+ IG+PL+L  +  +   GIFE+G+S   E+  L  +  P I V+T I  AH+
Sbjct: 61  KSPKSFNSQIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHI 120

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           SNF   + +   K  +F   + + +I  N D+         +     K + S+G +K+ +
Sbjct: 121 SNFKSEKHLVDEKISLF---KDSESIIFNGDNILVSN--KINTLYSSKNLISYGFNKDNN 175

Query: 258 FQL-RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +   WK    Q  + VQ   KS              N+L  + ++ +L    +  I+ 
Sbjct: 176 IHISSNWK--DRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIEK 233

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ++     E    R           +I++S+N +  S+K A   +     + + ++  ++ 
Sbjct: 234 INNLKAVE---MRLESVNGIKNNLIINDSFNLDLDSLKIAFEFIKS---YQKPKKSLIIT 287

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           D  E    + + + ++A +++  N + V+L G  +   +  L  +       T + LF  
Sbjct: 288 DFTE-KSDADNLYQEVASLINEQNFNKVFLIGEEISQYQHLL--NTESFSFNTTNDLFSN 344

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +   ++ +++++K +      ++   L
Sbjct: 345 QEFKDLENELILLKGARKFEIEQVKTYL 372


>gi|319639047|ref|ZP_07993804.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
 gi|317399625|gb|EFV80289.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
          Length = 469

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 157/436 (36%), Gaps = 50/436 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  +    L +           +    +   L     +   G  E  
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAG--------LDPTFVIGGKLNAAGTNARLGKGEYI 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           ++   E       + P ++V+T I   H+  +   +E++  A  +    +   G  FL  
Sbjct: 159 VAEADESDASFLYLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSME 282
           D      +  K      K   ++G    AD      +    Q    V +Q      +  E
Sbjct: 219 DSEHVRAILPKIS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFE 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           VV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L
Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGAAL 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A ++      P     +  VL         ++    D  +VL+  + 
Sbjct: 335 LVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTVDA 390

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVK 450
              + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+  
Sbjct: 391 LVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVLNM 450

Query: 451 SSNSCGFYRLINLLLE 466
            + S    R+ + L+E
Sbjct: 451 GAGSIN--RVPSALVE 464


>gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 490

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 170/481 (35%), Gaps = 49/481 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H +   P+  +++ G + D+  + P   F A+ G    G   +  A+ 
Sbjct: 1   MKLSELLAGHDHHVLQGDPERAWISAGTAFDADRVTPGSLFIAVPGHVEGGPGAVAPALA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           +GA  V+V+ D V    +    V  V D   A   +          +  ++AITG+ GKT
Sbjct: 61  RGAAAVMVDADCVLPAAARDACVVRVADTRTAAALVTARYFGEPGRQMDVVAITGTNGKT 120

Query: 121 TTKEMLTIALS-SIKKTYACIGSYNNHI-----GVPLTLARMPVDVDFGIFELGMSHLG- 173
           +   M+   L  S       IG+  + I      +P ++   P   D       M   G 
Sbjct: 121 SVSYMVESVLRISEGTRAGVIGTAGSRIGDEPIPMPPSVLTTPETPDLQYLLGCMRDRGV 180

Query: 174 --------EIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                    +  LTH V      + V T ++  HL +   +E    AK  +F+GL +   
Sbjct: 181 RSVVLEATSMGLLTHRVDRTFVDVGVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCRH-- 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     ++A         + ++     AD++       +  S   +  +G+   
Sbjct: 239 AVVNVDDPVGAGIQAMMPGA----VTTYALDAEADYRATDLVVDAAGSRFTLHHEGRKYP 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G     N L T+    +L  D+   + AL       GR +R   A   G   ++
Sbjct: 295 AAIPSPGRFSVANALATVAACHVLGHDLTGLVAALERMPQIPGRFERLTTA--AGTSVIV 352

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y  +P S+   +  +   +    GR + V G     G+   +   ++  +   ++  
Sbjct: 353 D--YAHSPDSLNKVLGTVRGFA---RGRVVTVFGC---GGDRDTTKRAEMGTIAGTHSDL 404

Query: 403 HVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V  S          + D +   I V                F  S+    D++++  K 
Sbjct: 405 CVLTSDNPRHEDPEDIMDQVAPGIAVTGTPYERIADRHAAIAFALSAAGPDDIILIAGKG 464

Query: 452 S 452
           S
Sbjct: 465 S 465


>gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
 gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
          Length = 454

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 148/398 (37%), Gaps = 39/398 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +      +IPV    ++L  L KL            IA++GS GKTTT  M
Sbjct: 73  SAVKPDNPEIQEAKRRNIPVIPRGEMLAELFKLKEG---------IAVSGSHGKTTTTSM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +              + +   L R+  +   G  EL +S   E       ++P 
Sbjct: 124 IAEILINAG--------LEPTVIIGGRLKRLGTNAKLGRGELLVSEADESDGSFLKLQPA 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT +   HL  +   E +  A  +    +   G   +N DD     L  KSH    +
Sbjct: 176 VAVITNVDKEHLDFYENFERVKEAFEQFMNSVPFYGFAVVNLDDPTLAQLVKKSH----E 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
            + ++G +  A  + +       +    V+ +GK +  +H GI G H   N L   G+  
Sbjct: 232 RVITYGINSPALVRAKNLYLKEGRYEFGVEFKGKELGRIHLGIAGIHNVYNALAATGVAL 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   K+L  F   E   +R           + D+ Y  +P  +KA I+ L  + 
Sbjct: 292 ELGVSFEVIKKSLEEFRNAE---RRLELKGYYKNSPVYDD-YGHHPTEIKAVINSLRDMY 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------LKDA 417
           P      + V          +     D  +VL   +I  + ++  +  +         + 
Sbjct: 348 PDKN--LLVVF--QPHRYSRTYYLFEDFVKVLK--DIDKLIVTDIYPASENNVYGVSAEE 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L R     +++  + +F  ++    +GDV++   + S 
Sbjct: 402 LARKSGAVFAKDKEEVFEKVREVHDEGDVILFLGAGSI 439


>gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
 gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
          Length = 493

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 158/458 (34%), Gaps = 44/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79
              V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G    
Sbjct: 22  DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGLVRY 81

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A 
Sbjct: 82  QQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+  N                + +  TLA +             SH G ++     ++ 
Sbjct: 142 MGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSH-GLVQGRVKALQF 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V T ++  HL     +E  A AK  +F    +     +N DD        +      
Sbjct: 201 AAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE-HQCQHAIINLDDEVGAQWFQELQQGVG 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +++    S  A               +E         +    IG   A N+L+ L  + 
Sbjct: 260 VSLFPQDASVKA-LWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLLALATLL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    + + +   P  GR + ++              Y   P +++ A+  L    
Sbjct: 319 ALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVV----DYAHTPDALEKALQALR--- 371

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
            H  G   A+ G   +  +  +    ++AE L+     HV L+  +  +         + 
Sbjct: 372 VHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLA----DHVVLTDDNPRSEDPAMIVQDML 427

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L R               +   +    D++++  K 
Sbjct: 428 AGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 465


>gi|304386680|ref|ZP_07368961.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
 gi|304339233|gb|EFM05312.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
          Length = 469

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           ++   + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DVLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 449 NMGAGSIN--RVPAALLE 464


>gi|309379069|emb|CBX22371.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 480

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 72  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 119

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 120 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 173 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 227

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKS 280
             D      +  K      K   ++G    AD      +    Q    V +Q      +S
Sbjct: 228 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQES 283

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 284 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 344 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 399

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 400 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 459

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 460 NMGAGSIN--RVPAALLE 475


>gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
 gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
          Length = 501

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 159/482 (32%), Gaps = 52/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + HD +Q ++    G         +  DSR +AP + F A  G   DG   +  A+ +
Sbjct: 5   LTSSHDAVQWLRERVTGT--------LQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVR 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA   +V    V + G     +  +  +  A   +A            ++A+TG+ GKT+
Sbjct: 57  GATACLVEQTGVEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTNGKTS 116

Query: 122 TKEMLTIALSSIKK-------TYACIGSYNNHIGVPLTLARMP--------------VDV 160
           T   L  AL+S+ K         A +G+    +   L    M                D 
Sbjct: 117 TAWWLAGALNSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQYADQ 176

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G   +  S +G            +A+ T     HL     + +   AK  +F+     
Sbjct: 177 GLGACAIEASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFDW-PGL 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD     L A+    G   ++S      A    +      +     V    + 
Sbjct: 236 QAAVINVDDPAGAQLHAELTG-GALDLWSISAHGAARLAAQDIALGPQGLRFTVVEGAQR 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +    IG++   N+L  L  +      +  A++A S   P  GR +R           
Sbjct: 295 VPLQTRVIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRLVAP----GQP 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+   Y   P ++  A+  L  ++    G+   V G   +     +     +A+     +
Sbjct: 351 LVAVDYAHTPDALDKALQALRPLAVERGGQLWCVFGCGGDRDAGKRPLMGAVAQ----QH 406

Query: 401 ISHVWLSGFHVLA------LKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +  +      L   L  +I    V                    DVV++  
Sbjct: 407 ADWVVVTSDNPRSEEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVVLIAG 466

Query: 450 KS 451
           K 
Sbjct: 467 KG 468


>gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
 gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
          Length = 493

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 159/458 (34%), Gaps = 44/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79
              V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G    
Sbjct: 22  DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGLVRY 81

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    +  A 
Sbjct: 82  QQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAV 141

Query: 140 IGSYNNH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +G+  N                + +  TLA +             SH G ++     ++ 
Sbjct: 142 MGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSH-GLVQGRVKALQF 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V T ++  HL     +E  A AK  +F    +     +N DD        +      
Sbjct: 201 AAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE-HQCQHAIINLDDEVGAQWFQELQQGVG 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +++    S  A               +E         +    IG   A N+L+ L  + 
Sbjct: 260 VSLFPQDASVKA-LWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLLALATLL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    + + +   P  GR + ++              Y   P +++ A+  L    
Sbjct: 319 ALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVV----DYAHTPDALEKALQALR--- 371

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
            H  G   A+ G   +  +  +    ++AE L+     HV L+  +  +         + 
Sbjct: 372 VHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLA----DHVVLTDDNPRSEDPTMIVQDML 427

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L R+              +   +    D++++  K 
Sbjct: 428 AGLTRADSAVVEHDRFSALQYALDNAQADDIILLAGKG 465


>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
          Length = 485

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 168/479 (35%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++           V  +  DSR +     F  I+G   DGH F+   V+KG
Sbjct: 1   MKLTALLEDLEYTCCQGDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           AG++VV   + A      + V  V D   A+  ++ A       +   I +TG+ GKTTT
Sbjct: 61  AGVLVVEEKVEAPE---HVTVILVKDTRYAMACISAAYFGHPARRLKTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+   L +       IG+    +G  +  A              +   D       + 
Sbjct: 118 TYMVKSILENAGYRVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEMADAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +   T        + T I P H+        +     K+ +   L +     +N
Sbjct: 178 VSSQALMLHRTAGFEFDFGIFTNIEPDHIGPNEHRDFQHYLECKSML---LRQCKVGIVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD  FE +  K H   ++   +FG S+ AD +    K  S + W+ +  Q +   + +V
Sbjct: 235 RDDKHFEQII-KGHTCALE---TFGFSEKADLRAEDAKLVSGKGWLGIDYQVRGMMNFQV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + I           + AL V   K     R         FTL+ 
Sbjct: 291 EIDIPGKFSIYNSLTAIAICRHFKVSEKDIVNALRVAKVKG----RIEMIKVSDEFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  ++++ ++ L +  PH   R + + G     G  S+    ++ E         
Sbjct: 347 D-YAHNAMALESLLTTLREYHPH---RLVCLFGC---GGNRSKLRRYEMGETSGRLADLT 399

Query: 404 VWLSG----FHVLALKDALPRSI---HVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           +  S         A+ D +   I      Y E  D      +       GD++++  K 
Sbjct: 400 IITSDNPRYEKPQAIIDDIKVGISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKG 458


>gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
 gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
          Length = 488

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 179/480 (37%), Gaps = 50/480 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T    L  I   +IG      V  +  DSR     + F AIKG   DGH +I   
Sbjct: 1   MKQLTTILTNLSII--KTIGDAEGVLVGELIFDSRKAKKGDVFVAIKGTQTDGHSYIEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118
            + G  ++V   +++  I   +I    V+D   AL  +A            ++ ITG+ G
Sbjct: 59  TEIGVSVIVC--EVLPEIQKENIVYVLVEDASIALGVMASNYYDNPTKNLQLVGITGTNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIG--------------SYNNHIGVPLTLARMPVDVDFGI 164
           KTTT  +L    + +      +               +    I     + R  VD     
Sbjct: 117 KTTTTSLLYELFTKLGYASVLVSTIQIVVDGDIIPTQNTTPDIVTLNRIFRQAVDKGCEY 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G ++     +   +A  T I   HL      +    AK + F+ L  +    
Sbjct: 177 AFMEVSSHGIVQNRIAGLYFRVAAFTNITHDHLDYHITFQNYIQAKKKFFDELPASTKAL 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD    ++   + A      + F    +A+F+ +  +   +   +    Q    E  
Sbjct: 237 VNLDDRNGRVMLQNTVASK----HFFTLKGDAEFKGKILESRFDGMLLNFNQQ----EFW 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + IG   A N+L+  GI  +L  +    +  LSV    EG   R++    QG   +I +
Sbjct: 289 TNLIGQFNAYNLLLVYGIAHLLGQEDTEVLTILSVLGSVEG---RFQTFHTQGDRVIIVD 345

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  +  I    E + I V+G     G+  ++   ++A++ +  +   +
Sbjct: 346 -YAHTPDALENVLDTIGGIRTKNE-QLITVVGC---GGDRDKTKRPEMADIAARKSDLAI 400

Query: 405 WLSG----FHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV--KS 451
           + S      +  A+   +   +   + +         + +   ++ S    D++++  K 
Sbjct: 401 FTSDNPRTENPEAILADMEAGVEPQFYDKTLKITDRKEAIKTALKMS-QKHDIILIAGKG 459


>gi|229220794|ref|YP_208580.3| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|229597261|ref|YP_002002446.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|260439879|ref|ZP_05793695.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|109892712|sp|Q5F6L9|MURC_NEIG1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 468

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 60  EHVNGADVVVA-----STAVKKENPEVVAALERQIPVIPRALMLAELMRFRDG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 108 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 161 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 216 CVDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 272 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 332 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 387

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 388 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 447

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+ + LLE
Sbjct: 448 NMGAGSIN--RVPSALLE 463


>gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus
           TK-6]
          Length = 452

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 151/420 (35%), Gaps = 40/420 (9%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F   +  + +  D +++     +  V  +   +     + IPV    D+L  L +L   
Sbjct: 54  VFIGHRAENVNSVDVVIY-----SSAVSESNPEIVQAKKMGIPVIPRGDMLAELFRLKEG 108

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IA+ GS GKTTT  M+   +            Y+  + +   L +   +  
Sbjct: 109 ---------IAVCGSHGKTTTTSMIAHMVHEAG--------YDPTVIIGGVLQKFGSNAR 151

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G  +L +S   E       + P +AVIT I   HL  +  ++EI SA       +   G
Sbjct: 152 LGKDQLIISEADESDGSFLKLLPTVAVITNIDREHLGYYKDLDEIKSAFLRFANSVPFYG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     +     A     + +FG  + A    R           ++  +GK +
Sbjct: 212 FCVMNADDENSREVMKSVKA----PLITFGIEREAHLMARNLSLEGGCYSFDLFYEGKPL 267

Query: 282 EVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +H    G H   N L  + +   +   V    KAL  F   E   +R           
Sbjct: 268 TRIHMSVAGRHNVYNALAGIAVCLRMGISVSNIKKALESFKNAE---RRLEFKGYFKGAA 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           + D+ Y  +P  ++A I  L ++  + + R + V          +     D  EVL   +
Sbjct: 325 VYDD-YGHHPTEIRAVIKALREM--YLQRRIVLVF--QPHRYSRTYYLFKDFVEVLKEAD 379

Query: 401 I---SHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +   + ++ +G           L ++    + E  + LF  I+  + D DV++   + S 
Sbjct: 380 VCLLTDIYSAGEENSYGVSAQDLAKAAGCAFFENKEELFDAIEKKVKDADVILFMGAGSI 439


>gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 499

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 156/466 (33%), Gaps = 61/466 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           +   +G S+DSR +   + F A+    +        F   A+  GA  ++  T++     
Sbjct: 19  KQPFHGFSLDSRKVESGQIFIALTSYSQPEKT--RIFAESALANGALAIISETELGLENE 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135
            +        +V   + +       +        I+A+TG+ GKTT   ++   +SS ++
Sbjct: 77  WVC------PNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRLIAELISSQQQ 130

Query: 136 TYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLT 179
             A +G+  N I   LT +                       F   E     L + R   
Sbjct: 131 QCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYTKQGATFASLEASSHGLEQGRLNG 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAK 238
             +   IAV + ++  HL     +E  A AKA +F          +N DD +  L+  A 
Sbjct: 191 CAIE--IAVYSNLSRDHLDYHGTLEAYAEAKALLFRF-SSLKVAVINLDDEYAALMINAA 247

Query: 239 SHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   I ++  ++N AD+ +         +   +  Q  S  V    +G+   +N++
Sbjct: 248 KQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGHFNVENLI 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L        D++  +  +       GR +  R         L    Y   P ++   I
Sbjct: 308 AALIAAEQAGFDLEALVAFVPQLIGAPGRMQVIR-----DGERLFVVDYAHTPDAL---I 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
            VL  +  H   +  AV G   +     +          +L   + + L+          
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPIILTSDNPRTEDPE 415

Query: 413 ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   + + I      +H          F+      GD+VV+  K 
Sbjct: 416 QIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 512

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 156/487 (32%), Gaps = 60/487 (12%)

Query: 5   WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
              ++LL  +QG  +       G      VN +  DSRS++P + F  + G   DGH F 
Sbjct: 1   MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITG 115
             AV +GA  + V       +  + +P     D    + +LA            +I ITG
Sbjct: 61  RDAVDRGAVALCVAR----PLAEVQVPQLVSRDPRAFMGRLAATLYGWPARDLKMIGITG 116

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDV 160
           + GKTT+  M+   L +       +G+                     V   L RM  + 
Sbjct: 117 TNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADRTTPEGADVQWFLKRMRDNS 176

Query: 161 DFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E     L + R           + T + P HL      +    AK  +F    K
Sbjct: 177 CQACVMEASSHGLKQGRI--EGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNRYMK 234

Query: 220 TGTI-FLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            G +   N  D      L++      G + I S        +  R      E   +EV  
Sbjct: 235 EGWVGASNASDPRGAALLMEHPDRMHGYRVIGSNESPVEGCWCGRIRSYDLEGMTLEVYD 294

Query: 277 QGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               +   EV    IG +  +N +  + +   +    D  ++ L+      GR + YR  
Sbjct: 295 PRGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLETYRFP 354

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                       Y   P  ++  +  L  ++    G+   V G     GE + S    L 
Sbjct: 355 NRVVGVI----DYAHTPDGLEKVLGALRGVTV---GKLWVVFG---HGGERTGSHRPKLG 404

Query: 394 EVLSLYNISHVW------------LSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSS 440
            V +      V             ++   V  +  A  R    H+          +   +
Sbjct: 405 AVAASLADRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRGEAIRYALDN 464

Query: 441 LVDGDVV 447
              GDVV
Sbjct: 465 AEIGDVV 471


>gi|161596204|gb|ABX73864.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           053442]
          Length = 451

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 43  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 90

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 91  --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 143

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 144 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 198

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 199 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 254

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 255 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 314

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 315 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 370

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 371 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 430

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 431 NMGAGSIN--RVPAALLE 446


>gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 485

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 163/458 (35%), Gaps = 54/458 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G ++DSR +A    F A  G   +G DFI    +K      V       +     
Sbjct: 23  DYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAIVARPEVKIEGA 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                ++   A  ++A          + A+TG+ GKT+  E+     +      A IG+ 
Sbjct: 79  VHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIGTL 138

Query: 144 NNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                       M                  D+   IFE     L + R  +   +    
Sbjct: 139 GVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR--SDGAKVIAG 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T+ +  HL     +E   +AK  +F+  +   GT  +  DD     + A     G+K 
Sbjct: 197 AFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKRGLKL 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I      K    +L   +  S+   + + ++G+S ++    IG +   N L+  G+V   
Sbjct: 257 I---DIWKAEAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGLVRAGLVLAT 313

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+   + AL++  P  GR +R   + N     +    Y   P  ++AAI  L    PH
Sbjct: 314 GGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYV---DYAHTPDGLRAAIEALR---PH 367

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA---- 417
            EG    V G     G+  +    ++ ++ +     HV ++     G     ++      
Sbjct: 368 TEGLLWVVFGA---GGDRDKGKRPEMGKIAANL-ADHVIVTDDNPRGEDAATIRKEVLVG 423

Query: 418 --LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L   I        + +F  I+ +   GD+V++  K 
Sbjct: 424 APLAEEIGGR----KEAIFSAIKRA-EKGDIVLIAGKG 456


>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
 gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
          Length = 499

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 173/479 (36%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ +Q   I       +  I  DSR +  Q  FF I G ++DGH ++ + + KG
Sbjct: 1   MKARELLKGLQYSVICGDEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYVKNVIDKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +VV  D+    G   + +  VD    A+            SK T+I ITG+ GKTTT
Sbjct: 61  AVCLVVQKDVEPVPG---VLIVKVDSTRYAMGIVSSNFYGNPSSKLTVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FELG 168
             M+   L S       IG+     G  +T A         +                + 
Sbjct: 118 TYMIREMLMSAGHKTGLIGTIEIIDGNNVTAANNTTPESMIVHKKLKDMVDNGLDSVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      V     + + ++  H+        EE A  K+++F   +       N
Sbjct: 178 VSSQGLMLDRVAGVDFDYGIFSNLSRDHIGPNEHKTFEEYAMWKSKLFTMCK---IGIFN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEV 283
            DD   + +   +       I ++G + + D++       ++   + +   L GK   +V
Sbjct: 235 ADDPHVDTMTEHATC----KIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSGKLDGDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + +  G     N L  + +  ++    D   + L     K     R         FT++ 
Sbjct: 291 LVNLPGNFSIYNSLAAIAVADLMGVPFDKIQEILKTIKVKG----RVELIPISDKFTIMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+ + +  L +  P    R +++ G     G  S+    ++ EV        
Sbjct: 347 D-YAHNAVSLMSILETLREYKPK---RLVSLFGC---GGNRSKERRYEMGEVSGNMADLT 399

Query: 404 VWLSG----FHVLALKDALPRSIH---VHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           +  S          + + +   I+     Y E +D      +   +   GDV+V+  K 
Sbjct: 400 IITSDNPRFEEPQDIINDIKTGINKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKG 458


>gi|229270471|ref|YP_975688.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           FAM18]
 gi|229597116|ref|YP_001599824.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           053442]
 gi|189029221|sp|A9M2H2|MURC_NEIM0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325198895|gb|ADY94351.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           G2136]
 gi|325202766|gb|ADY98220.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240149]
          Length = 468

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 60  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 108 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 161 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 216 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 272 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 332 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 387

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 388 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 448 NMGAGSIN--RVPAALLE 463


>gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
 gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
          Length = 495

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 156/455 (34%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA  V+   D   + G +    
Sbjct: 26  VITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIEYRE 85

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L+++A          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 86  AVPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 145

Query: 142 SYNNHIGVPLTLARMPVD-------VDFGIFELGM-------SHLGEIRFLTHLVRPHIA 187
           +  N     L  A              + + E G        S  G ++     +     
Sbjct: 146 TTGNGFLNALEPAANTTGNALQIQATLWDLAERGAQYTALETSSHGLVQGRVKKLNFVAG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 206 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+ +       +         E+    IG   A N+L+    +  L 
Sbjct: 265 VTKPDTAQA-IWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNVLLAFATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++          I   Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPQLRPVIGRMELFQREQKAK----IVVDYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 377 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVVGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +   +    D++++  K 
Sbjct: 433 THPERAHIEHHRFQAASYALQNAGAQDIILLAGKG 467


>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Azotobacter vinelandii DJ]
 gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
           DJ]
          Length = 487

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 145/393 (36%), Gaps = 32/393 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ +GA  V        S     +P+
Sbjct: 17  LIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDALARGAAAVAYEAAGAPSFADGGVPL 76

Query: 86  FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             +  + G L+ +             ++ +TG+ GKT+  ++L  AL  + +    IG+ 
Sbjct: 77  VPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGKTSVSQLLAQALDLLGERCGIIGTL 136

Query: 144 NNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIA 187
            N     L   R        +                 E+    L + R     +   +A
Sbjct: 137 GNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAVSMEVSSHALAQGRVSA--LDFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T ++  HL     ++   +AKA +F          LN DD F  LL  +++A     +
Sbjct: 195 IFTNLSRDHLDYHGSMDAYGAAKARLFAW-PGLRCRVLNLDDPFGRLLAGEANAS---RL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +  +S++A    R+     +    EV        +    +G     N+L  +G +  L
Sbjct: 251 IGYSLESRSAQVHCRRAHFDEQGVRAEVATPQGEGLLHSPLLGRFNLSNLLAVVGALLGL 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D  ++ +       GR +R       G   L+   Y   P +++  +  L    PH
Sbjct: 311 DYALDEILRVVPQLQAPAGRMQRL----GGGAKPLVVVDYAHTPDALEKVLEALR---PH 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             GR + + G   +     +     +AE L+  
Sbjct: 364 VRGRLLCLFGCGGDRDRGKRPLMAAVAERLADA 396


>gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0205]
          Length = 503

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 161/481 (33%), Gaps = 47/481 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+ +       +  G V G+S DSR + P   F  + G   DG  F   A+Q GA 
Sbjct: 5   LHSLLREVGLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAA 64

Query: 67  LVVVNTDMVAS-IGSLSIPVFGVDDVL---GALNKLAVAARLRSKATIIAITGSVGKTTT 122
           L V+      +   +    V  V D +     L       +   +  +I +TG+ GKTTT
Sbjct: 65  LAVIGRSAAEARPPADGDAVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             +L    S+     A  G+  N        A+                          E
Sbjct: 125 TYLLEHLASACGYPAALFGTLINRWPGHSITAQHTTAFADELQAQLALAAESGARIAAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224
           +    L + R      R   A+ T +   HL     +E    AKA++F    L       
Sbjct: 185 VSSHALDQQRI--SGCRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARAV 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD + + L  +      +   S     +AD ++   +  S+     +          
Sbjct: 243 VNVDDPWGKQLAERLGDRCWRA--SLEPDSDADLRMEALQMGSQGVSGTLITPLGRGAFS 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA---LNQGFFTL 341
              +G     N+L  +G++      +   ++AL  F    GR +R + A           
Sbjct: 301 SPLLGKFNLMNLLEAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPA 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P  +++A+       P  EG+ I V G     G+  ++    +A + +    
Sbjct: 361 VLVDYAHTPDGLESALKACR---PFVEGQLICVFGC---GGDRDRTKRPQMAAIAARL-A 413

Query: 402 SHVWLSGFHVLA------LKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +         LKD    +P    V              +     D+V++  K
Sbjct: 414 DQVLVTSDNPRTEDPEQILKDVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
 gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
          Length = 524

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 167/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +       V  I  DSR +     FF IKG   DGH +     QKG
Sbjct: 38  MKLTKLLERVEYECVQGNTDIEVTDIVNDSRKVREGCLFFCIKGAVADGHKYAAEVAQKG 97

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           AG++VV  D+        + V  V D   A+  +A A       K  +I ITG+ GKTTT
Sbjct: 98  AGVLVVQDDVQVPGD---VTVIKVADSRYAMALIAAAWYGHPAEKLKVIGITGTKGKTTT 154

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+   L +       IG+    IG  +  A                  +       + 
Sbjct: 155 TYMIKSILEAAGHKVGLIGTIEAIIGDKVIPASNTTPESTTIQKYFAEMAEAGCDCVVME 214

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T      I + T + P H+        E+    KA +F+          N
Sbjct: 215 VSSQGLMLHRTVGFTFEIGIFTNLEPDHIGPAEHENFEDYLRCKAMLFKQCRHG---IFN 271

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEV 283
            DD+  E +           + ++G  + ADF+  + +  S+  ++ +       ++  V
Sbjct: 272 ADDAHLEAILEGHTC----DVETYGFGEKADFRASEAQLVSKPGYLGIAYHVTGKRNFFV 327

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +      + +  I AL     K     R         FTL+ 
Sbjct: 328 EIDIPGKFSIYNSLAAIAVCDYFGVEEEKMIAALKKAKVKG----RIEMIKVSDEFTLMI 383

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ L + +P   GR + V G     G  S++   ++ EV   Y    
Sbjct: 384 D-YAHNAMSLESLLTTLKEYNP---GRLVCVFGC---GGNRSRARRFEMGEVSGKYADFT 436

Query: 404 VWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S         A+   +   I                  +       GDV+V+  K 
Sbjct: 437 IITSDNPRYEEPEAIIADIETGIAKTDGKYIKITDRKEAIAYAIHHGQPGDVIVLAGKG 495


>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
          Length = 484

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 155/476 (32%), Gaps = 54/476 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ +     G +P+  + GI+ DSR   P   F  I G   DGHDF   A   G
Sbjct: 1   MKLQNLLRDVSYTG-GALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFAASAAAAG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           +  V+   D  A      +P   V D   A          R   +  ++ +TG+ GKTTT
Sbjct: 60  SPAVLALRDTGAP-----VPHILVKDTRLAYALCCANFFGRPAERLRMVGVTGTNGKTTT 114

Query: 123 KEMLTIALSSIKKTYACIGSY--------------NNHIGVPLTLARMPVD--VDFGIFE 166
             +L   L         IG+                        L +   D   +F + E
Sbjct: 115 TTLLKEILEYNGHKSGLIGTIVNMAGGKTLPSHLTTPEPYEFQQLLKTIADEGCEFAVME 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L +            AV T +   HL     +E    AK ++F   +      +N
Sbjct: 175 VSSHALAQ--ERVAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEKLFSMCDLG---IVN 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   +         KT+    +  NAD+  R  K  ++    E+        V   
Sbjct: 230 VDDDYAPEI---IRTAKCKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNALIGRVSVP 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L        L       ++AL      +G   R         FT+I + Y
Sbjct: 287 IPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKG---RIEVVPTGRNFTVIID-Y 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  +   +   +GR +A+ G     G+  ++    +  +++        +
Sbjct: 343 AHTPDALEKILKSIRGFA---KGRVVALFGC---GGDRDKTKRPIMG-MVAGRGADFCIV 395

Query: 407 SG-----FHVLALKDALPRSIHV----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +   +                 +   +    D+V++  K 
Sbjct: 396 TSDNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIVLLAGKG 451


>gi|189029013|sp|A1KVL2|MURC_NEIMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120867149|emb|CAM10916.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis FAM18]
 gi|254671167|emb|CBA08261.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha153]
 gi|261391937|emb|CAX49399.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis 8013]
 gi|317164855|gb|ADV08396.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           TCDC-NG08107]
 gi|325134890|gb|EGC57523.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M13399]
 gi|325138957|gb|EGC61507.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           ES14902]
 gi|325142977|gb|EGC65334.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           961-5945]
 gi|325208762|gb|ADZ04214.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           NZ-05/33]
          Length = 469

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 160/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 449 NMGAGSIN--RVPAALLE 464


>gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 506

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 172/480 (35%), Gaps = 54/480 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   S        V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLG--SSAPESAAEVTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAA 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  VDD    + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPTGAERAAASGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L +++ T   IG+    IG     +    P   D       M   G     +   
Sbjct: 135 LVEGGLKTVRST-GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 193

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDD 229
           +H +           I V T ++P H+   SG+E+   AKA++F    K G +  +N DD
Sbjct: 194 SHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFT--PKRGKLGVVNVDD 251

Query: 230 SFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
            +   L  ++       + ++      +AD++    +     S   V   +G+ +     
Sbjct: 252 EYGRRLVNEATV----PVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISAKSP 307

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +  +++   D   A   ++      GR +R     + G   L    Y
Sbjct: 308 LPGPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERV----DAGQPYLAVVDY 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                ++++ +  L +++   EG+   VLG     G+   +    +    +    + V  
Sbjct: 364 AHKTDAVESVLRALRKVT---EGKLHIVLGC---GGDRDTTKREPMGAAAARLADTAVLT 417

Query: 407 SG----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S        LA+   + +            V   E          +    GD V+V  K 
Sbjct: 418 SDNPRSEDPLAILATMLQGAASVPAYERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 477


>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
           ATCC 19707]
 gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
          Length = 519

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 168/476 (35%), Gaps = 48/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + +    IG V +  ++ +S+DSR +AP   FFA +G    GH  I  AV +GA  +V
Sbjct: 26  LAEWVS---IGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIV 82

Query: 70  ------VNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTT 121
                 V+  +   +   +IP+  + D+     +       R   +  ++ +TG+ GKT+
Sbjct: 83  YDPVIPVSPAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTS 142

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----PLTL-----------ARMPVDVDFGIF 165
               L  AL         +G+    +       PLT            A     + + + 
Sbjct: 143 VSHFLAQALHRQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVL 202

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R   + V  + A+ T ++  HL     +    +AK  +F    +     +
Sbjct: 203 EVSSHALEQGR--VNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLF-NQPELRHAVI 259

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD       A   +       S+G  +  A+    +         M VQ      ++ 
Sbjct: 260 NIDDVAGRAFLANLPSEVAA--ISYGITNPQANLWASELHCDRYGIAMTVQSAWGEGQLT 317

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+L  LG + ++      A++ LS      G   R      +    L+  
Sbjct: 318 CSLLGRFNAYNLLAALGGLLVVGMPFTEALQRLSQVRAVAG---RMEAFGEKEGEPLLVV 374

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y   P +++  +  L Q+     GR   V G   +     +      AE L+ + I   
Sbjct: 375 DYAHTPDALEQVLCSL-QMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFVILTD 433

Query: 402 ----SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +    ++ +   +     V+   +     +         D+V++  K 
Sbjct: 434 DNPRDEDPI--QIIIDILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKG 487


>gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
 gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
          Length = 532

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 170/460 (36%), Gaps = 39/460 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G+S DS+ I P + + A  G    G +F   AV  GA  VV +    A +  L++
Sbjct: 38  DTTVTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAV 97

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV   +DV G   +L+        ++  +  +TG+ GKTTT  ++   L         IG
Sbjct: 98  PVLVAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTGVIG 157

Query: 142 SYNNHIGVPLTL----------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG  +                    +  DVD    E+    L   R  T  +R  
Sbjct: 158 TVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGR--TAGIRFK 215

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A    +   HL   +  E+   AKA++F     T    ++ DD     +  +  A G++
Sbjct: 216 AAAFLNLTQDHLDFHADFEDYFEAKAKLFTP-GYTERAVVDVDDEHGRRVVERCRANGVQ 274

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +++F  K   AD+        ++ S   V    G+  +      G     N L  + ++
Sbjct: 275 -VHTFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAAIVLL 333

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++   D++TAI  ++  H   GR +R +     G   L    Y   P ++  A+S L  +
Sbjct: 334 AVTGIDLETAIAGVADVHGVPGRMERIQVP---GQQFLAVVDYAHTPDAVLTALSALRPV 390

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLA 413
           +  G GR   V+G   +  +  +      A  L+   +          S   L+     A
Sbjct: 391 AERGRGRLRVVVGCGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAGA 450

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +      +               ++   GDV++V  K 
Sbjct: 451 DAELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKG 490


>gi|255659952|ref|ZP_05405361.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
 gi|260847826|gb|EEX67833.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
          Length = 465

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 160/422 (37%), Gaps = 43/422 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G   +VV+T +          V    D+ +  L++  + A L ++   IA+ G+ GKTT
Sbjct: 70  RGVDAIVVSTAIPFDNPE----VLAAKDLGITKLHRSDINAALVNEYKGIAVAGAHGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ML +AL+    + + +      +    T A +    D+ + E   S    ++     
Sbjct: 126 TTSMLGVALTHAGVSPSVV--VGGEVPDLGTNAELGTS-DYLVSEADESDGSFLK----- 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSH 240
           + PHIAV+T +   H+ ++  +E I  A  +  + ++K TG   + +D+     +     
Sbjct: 178 LHPHIAVVTNVEDDHMDHYGTMENIIKAFTQFIQNVDKETGYAVICFDNENLRNMAKNL- 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMT 299
               +   ++     AD++ +           +V    + +  V  +  G H   + +  
Sbjct: 237 ---DRKYITYAIDHEADYRAKNITHSGTGISFDVFHGEEELGHVDLNIPGRHNVLDAMAC 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +    +     L+ FH   G  +R++         ++D+ Y  +P  + A +  
Sbjct: 294 IVTGLSIGVSFEKMASGLAAFH---GAKRRFQTKGRVNGVWIVDD-YAHHPTEIAATLKA 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFH 410
             + +P    R I V          +Q  H +  +         +  +Y      + G  
Sbjct: 350 AKETNPK---RLICVF--QPHRYSRTQLLHEEFGKAFVSADVLVLTDVYAAGEAPIPGIS 404

Query: 411 VLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC---GFYRLINLLL 465
              + D + R    HV Y    + L  +++  +  GD+V+   +      G   L+ LL 
Sbjct: 405 GQTIVDEVQRQSGQHVVYEPAREKLAAYLKDFVQPGDLVITMGAGDIYKTG-EELVALLQ 463

Query: 466 EE 467
            +
Sbjct: 464 AK 465


>gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 514

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 87/501 (17%), Positives = 163/501 (32%), Gaps = 70/501 (13%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    ++ +   S+ +  +  F AIKG   DGHDFI  AV  GA   +V          
Sbjct: 22  TLESVEISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIVE-----DFVE 76

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY- 137
             I    V +   AL K+A         K  +  IT S GKT+T  M             
Sbjct: 77  EDILQIKVKNSRIALAKVASIFFGEPSKKLKVTGITASNGKTSTAFMTKCIYDKAGYNTG 136

Query: 138 --ACIGSYNNHIGVPLTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
               + +    + +P  L               +   +D  I E+  S  GE+    +  
Sbjct: 137 ISGTVYTKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSS-AGELAR-AYAT 194

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I     I P H+ N    E     K+ +    +      LN D      L+  + A 
Sbjct: 195 DFDIVTFNNITPEHIVNHGSFERYYHVKSRLIRHAKDDCVAILNSDFELINDLRNNTKA- 253

Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWME-----------VQLQGKSMEVVHHGIGY 290
               + ++    N  D  +      +     +           + ++ +S +V     GY
Sbjct: 254 ---QVVTYSLKNNLEDISIDNLDLSTGFGKFKFIVNRDIKLKGITIKKQSFDVELKVAGY 310

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N ++ + I  +   D+DT +  +  F   E   +R+    ++GF   I + + AN 
Sbjct: 311 SSVMNAIVAITIGLVNGIDLDTILAGIQDFTGVE---RRFEVIFDEGFK--IVDDHFANK 365

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA----------EVLSLYN 400
            +++  +  LS++         A+ G     G      + ++           E +   +
Sbjct: 366 NNIEVTLDTLSKMDYKNLDILYAIRGS---RGADLNEENAEVIASWYERLKPREFIVTLS 422

Query: 401 ISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---- 451
              V           +A  R     +I     + +      +     D D+V+       
Sbjct: 423 KDTVTWKDEVTDDELEAFKRVMSKHNIKFVLEDNLKEAVEKVIDGTKDDDLVLFAGCQGM 482

Query: 452 --SNSCGFYRLINLLLEEFPA 470
             +    +  +I   L ++P+
Sbjct: 483 DKAMGIAYDHIIERNLTKYPS 503


>gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12J]
 gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 154/464 (33%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+      A      + +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAEAHGYAMPADAPVRI 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L              +I +TG+ GKT+  + +  AL+   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       I  E+    L + R      R  I
Sbjct: 153 LGTGFVDALATTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGR--VDGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + E   AKA +F G +      +N DD+    L   + A     
Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLF-GWQGLRAAVINRDDAAGVRLLQNARA--DVE 267

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +G   +A          +    +     +  +V        V    +G     N+L 
Sbjct: 268 TIEYGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSNLLA 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG +         AI  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGALLAAGVSWQDAIARLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    G+  AV G   +     +     +AE L+     HV L+  +  +     
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGSIAERLAP----HVVLTSDNPRSEDPQH 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DV+VV  K 
Sbjct: 440 ILDEIADGMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483


>gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
 gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
          Length = 491

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 148/459 (32%), Gaps = 35/459 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+        
Sbjct: 9   DVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDG 68

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +      V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 69  LP-VPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
           V   +AV T +   HL     + +  +AKA++F   GL+      +N DD F   L A  
Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA---AVVNLDDGFGRTLFAAL 244

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    S     +A    +  +         + +QG+   V    +G     N+L  
Sbjct: 245 DPALRAIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAV 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  +          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD-- 416
           L     H + R I V G   E     +     +AE+   +  ++     G    A+    
Sbjct: 362 LRS---HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADI 418

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                R                        D+V++  K 
Sbjct: 419 LRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457


>gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter sp. K31]
 gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31]
          Length = 485

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 100/454 (22%), Positives = 157/454 (34%), Gaps = 39/454 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR +     F A+ G   DG  FI  A+                +  LS+
Sbjct: 16  DPVITGVTADSRKVREGFLFAALPGSKADGRSFIDGAI----ASGAAAILAPDDVEGLSV 71

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV    D+  A    A        AT IA+TG+ GKT+         + +    A +G+ 
Sbjct: 72  PVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAASMGTL 131

Query: 144 NNHIGVP------LTLARMPVDVDFGIFEL---------------GMSHLGEIRFLTHLV 182
              +  P      LT   +       + E+                 SH  + R L   V
Sbjct: 132 GVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRL-DGV 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHA 241
           R   A  T     HL     +    +AK  +FE  L +  T  LN D   F    + +  
Sbjct: 191 RLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASAAVT 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G +TI S G  +    +L       +   +++  Q +  +V+    G   A N+L+  G
Sbjct: 251 SG-QTILSVG-HEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAAG 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V     D+D  I AL       GR +R       G   +    Y   P  ++   +VL+
Sbjct: 309 LVLATGEDLDATIAALEHLEGAAGRLQRVGTGARGGEAYV---DYAHTPDGLE---TVLA 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALP 419
            + PH  G+ I V G   +     +    ++A  L+   I       S          L 
Sbjct: 363 ALRPHTRGKLIVVFGAGGDRDRGKRPLMGEIAARLADVAIVTDDNPRSEEPASIRAAILA 422

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                 + L DGDV+VV  K 
Sbjct: 423 AAPGAQEYGDRREAIRAGAALLADGDVLVVAGKG 456


>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 504

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 152/474 (32%), Gaps = 51/474 (10%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G    +     +  ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +
Sbjct: 18  SGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPV 77

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L +          AL   +   R   +  + A+TG+ GKTT   ++     +  
Sbjct: 78  ECAPARLLLA--PSARRAMALAAASFCGRPAERLRMAAVTGTNGKTTVTYLVEACARAAA 135

Query: 135 KTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFL 178
                +G+ +                   +   LA M        + E+    L +    
Sbjct: 136 VPVGVLGTISFRFPGAERPASHTTPESTAIQAVLAEMVEAGARDAVMEVSSHALAQ--ER 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237
              +R   A  T +   HL     +E   +AK  +F E L   GT  +N  D +   L  
Sbjct: 194 VAGIRFQAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPGGTAVINARDPWGARLAD 253

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        ++ +G       +  + +     +    +    ++ +    +G H  +N+L
Sbjct: 254 QL--GPGPRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLL 311

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G+   L    +   + L+  H   GR +R       G    +   Y     ++   I
Sbjct: 312 CAAGLALGLGLPPEAVARGLAASHGAPGRLERI-----DGRGLSVFVDYAHTDDALARMI 366

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------IDLAEVLSLYNISHVWL----- 406
           + L  +SP    R + V G   +     +          DLA V S    +   L     
Sbjct: 367 AALRGLSP---RRLVCVFGCGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIAD 423

Query: 407 -------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +G   +    A                         +GD V+V  K 
Sbjct: 424 VLPGLDRAGKPAIGAARARAGEDGYVVEPDRRAAIALAVECAREGDAVLVAGKG 477


>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
 gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
          Length = 518

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 175/499 (35%), Gaps = 72/499 (14%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + Q +QG  +   P         V+G+S+D+R+++    F A+ G   DG  FI      
Sbjct: 8   IAQLLQGVWLAEAPLDASVANIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEKCDSA 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
            A  ++   D      + ++PV  +  +   ++++A           TII ITG+ GKTT
Sbjct: 68  TA-AILAEADTFGVDLTGAVPVVHIPQLKQKISRVAANFYGHPSRSLTIIGITGTNGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNN---------------------HIGVPLTLARMPVDV 160
              +L   LS ++ +   +G+                         +     LA +   V
Sbjct: 127 CAYLLAQLLSKLQFSCGMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQV 186

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                E+    L + R     V  + A+ T ++  HL   + +EE A+ KA +F   E+ 
Sbjct: 187 GAVAMEVSSHGLAQGRVAD--VDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAR-EEL 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--------KNADFQLRKWKQCSEQSWM 272
             + +N DD+    +     A    T YS+                     +  S Q+  
Sbjct: 244 SFVVINADDAVGVNILTNGVAPQAIT-YSYSLGGEQALVAQSENTIVAHSIEWGSSQTVA 302

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++     + E+    +G +   N+L  L     L   +   +  +       GR +R   
Sbjct: 303 QLHTPWGAAELATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNS 362

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +        +   Y   P +++    VLS+++ + +G+   V+G         +    ++
Sbjct: 363 SEQP---LAVFVDYAHTPDALE---KVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAEV 416

Query: 393 AEVLSLYNISHVWLSGFHVLA------LKD---ALPRSIHVHYSETMDGLFLFIQSSLVD 443
           AE L+      V L+  +         LKD    L                 +  ++  +
Sbjct: 417 AERLANC----VVLTSDNPRDENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAE 472

Query: 444 GDVV-----------VVKS 451
            D +           +VK 
Sbjct: 473 NDAIVIAGKGHENYQLVKG 491


>gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
 gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
          Length = 514

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 172/471 (36%), Gaps = 52/471 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +    +  + G++ DSR +  +  FFA+ G H+DG  FI  A+Q+G+ ++V   D+ +
Sbjct: 27  KEVRGSCEVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQGSNVIVHTNDIDS 86

Query: 77  SIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +++       ++   ++            K  II +TG+ GK++    +   L S+ 
Sbjct: 87  YDPNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMG 146

Query: 135 KTYACIGSYNNH------------------IGVPLTLARM-PVDVDFGIFELGMSHLGEI 175
                I +                        + L L++M   +V++ I E     L   
Sbjct: 147 VKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHGLDAR 206

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFEL 234
                 +   +AV+T I+  HL     ++   +AK  +F   +   G   +N DD+ F +
Sbjct: 207 TSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIVNMDDNNFSV 266

Query: 235 LKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                    I  +Y++  ++KNADF + K  +       E   +    +   +  G    
Sbjct: 267 FLN-----AINRVYTYSLENKNADFFVSKINEQMGFIEFEFYHKDVKYDARVNLTGSFNV 321

Query: 294 QNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           +N++  L +VS ++   +   I         EG   R +       F+LI + Y   P +
Sbjct: 322 ENVMAALIVVSQVMNIHISELI---EKLVNVEGLCGRMQGVDFGQDFSLIID-YAHTPGA 377

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                 +  +++ +   R I+V G   E     +    ++A+  S      + L      
Sbjct: 378 FLKIFPMFKRLAKN---RLISVFGSAGERDTFKRKLQGEIADRYS----DIIILCDEDPR 430

Query: 413 A---------LKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +         + + +     +  + +                 GD+VV   
Sbjct: 431 SEDSMQIIRDIAEGISGKTLNKDLFFIPDRRSAIEKAVDIAYAGDLVVTLG 481


>gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
 gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
          Length = 491

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 160/458 (34%), Gaps = 48/458 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S+DSR I     F A++G   DG  FI  A+ +GA +V+  T   A  G + +   
Sbjct: 20  VQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIKMHAQ 79

Query: 87  GVDDVLGALNKLAV-----AARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             + ++  L  L           +     +I ITG+ GKTT   +L  AL  +    A +
Sbjct: 80  VAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVKNAQM 139

Query: 141 GSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIRF-------------LTHLVRPHI 186
           G+  N +   L +     +D      EL        ++                 +  + 
Sbjct: 140 GTIGNGLFGQLKSSLNTTLDAISIFAELASYQQQGAQYTLMEVSSHGLDLGRVQALPFYS 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL +   +     AK  +F          +N DD   E+  ++        
Sbjct: 200 AIFTNLTRDHLDHHGTMACYGLAKKRLFSEYSLQQR-IINIDDPTGEMWLSEFSDA---- 254

Query: 247 IYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             S+GK  ++   F +++     +      Q      ++     G+   QN+   L  + 
Sbjct: 255 -ISYGKATNQKQYFTVKEIFYQKQGICFNFQSSWGDGQISAPFYGHFNVQNLSAVLCQLL 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +    K     +   GR +  +   ++   T + + Y   P +++ A+  L Q  
Sbjct: 314 AEGFSITQLKKVFLKLNTVPGRME--QYYFSKQDITFVVD-YAHTPDALEKALQALHQ-- 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415
              +G  I + G   +     +     +AE L+    S V L   +         +  + 
Sbjct: 369 HSQKGELICLFGCGGDRDTGKRPEMAKVAEKLA----SQVILVDDNPRTEQASVIMQDIL 424

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   V    + +    +       GD+++V  K 
Sbjct: 425 AGFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKG 462


>gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
 gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
          Length = 491

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 167/474 (35%), Gaps = 53/474 (11%)

Query: 5   WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L+A+      +        + IS +S+ I     F   KG ++D H  +    +
Sbjct: 1   MKIKEILKALNSVILKVNCDENMEFDYISSNSKDIKENTLFICRKGFNFDSHKIVDDVAR 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120
            GA         +        P   V D   A + +A     +    +I   +TG+ GKT
Sbjct: 61  NGAE------IFIVEEEIEDYPYILVVDSRIAESIIADVFFQKPYEKLITFGVTGTNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGI 164
           T+  +    +       +  G+  N I                           D  +  
Sbjct: 115 TSVHLFHHIMHQFGIKGSISGTVLNDIMGDKFYHHNTTPSAIEITKNMFKTVIEDGKYYA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L + R     +R  I  IT I   HL      E    AK  I   L+  G   
Sbjct: 175 MEVSSHALSQYR--VESIRYDIVGITNITRDHLDFHQTFENYKRAKLHILNLLKPNGIAI 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N+       L        I+ + +FG   N+D+ + +        + +++      +VV
Sbjct: 233 VNH------ELIHDIPKKNIR-VVTFGTDNNSDYVIHEIISNWSGIFFKLKTPFGEKKVV 285

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+ + +  +  +  D+D  I A+S F   +GR +    A   G   +ID 
Sbjct: 286 SQLLGDFNAFNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGIEIVID- 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +   P +++ AI  + +++   +GR I V G     G+        + E+ S Y+   +
Sbjct: 345 -FAHTPDALEKAILSIRKLT---KGRIITVFGA---GGQSDVGKRPMMGEIASKYSDICI 397

Query: 405 WLS----GFHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    G   + +   +   +      +   +  + +   I +    GD++++
Sbjct: 398 ITTDDPRGEDPVKIIKDIEEGVVSGSLSLSIIDRREAIDTAI-TLANRGDIILI 450


>gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 491

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 148/459 (32%), Gaps = 35/459 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+        
Sbjct: 9   DVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDG 68

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +      V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 69  LP-VPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
           V   +AV T +   HL     + +  +AKA++F   GL+      +N DD F   L A  
Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA---AVVNLDDGFGRTLFAAL 244

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    S     +A    +  +         + +QG+   V    +G     N+L  
Sbjct: 245 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAV 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  +          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD-- 416
           L     H + R I V G   E     +     +AE+   +  ++     G    A+    
Sbjct: 362 LRS---HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADI 418

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                R                        D+V++  K 
Sbjct: 419 LRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457


>gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
 gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
          Length = 564

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 97/508 (19%), Positives = 164/508 (32%), Gaps = 72/508 (14%)

Query: 2   NPLWTFH-DLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +P+ T+   LL  I    +  V      V+ I  DSR +     FFA  G H DG  +I 
Sbjct: 36  SPMKTYKKHLLHGIPHAMVIDVRGTDTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIA 95

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
            A+  GA  +V   ++ +    +      V +V   ++               +I +TG+
Sbjct: 96  DAIHTGAIAIVHQNELPSYAAGVC--YVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGT 153

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNN-----------------HIGVPLTLARMPVD 159
            GK++T   +   L    K      + +                   + V   LA M  +
Sbjct: 154 EGKSSTVSFIAQLLRLAHKRAGFFSTVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDN 213

Query: 160 -VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +F + E     L  +    + V     +   +   HL      E+    KA +F  L+
Sbjct: 214 GCEFAVVESSSHGLSPLTARLNDVCFDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLD 273

Query: 219 KTGTI----------FLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKNADF 258
           +   I           +N DD   E   A +     +  YSF           K++    
Sbjct: 274 EHAHIKAGRSVPSFGVVNADDPSAEYFYAATK----QPCYSFSVNTAKKTAFLKNELQGV 329

Query: 259 QLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIK 315
                K+ S     ++   GK  S+       G    QN+  + L + SIL   +   I 
Sbjct: 330 IAVNIKEDSNGIQFDIFESGKSESIHARAPLAGLFNVQNLCASLLTVSSILQKPLAELIP 389

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR  + +    Q F  LID  Y   P+S +  +  +        G+ I V 
Sbjct: 390 LLQKLEPITGRMCKIQ--EGQPFEVLID--YAHTPSSFQMLMPPIKDRIAKQGGKLIVVF 445

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI-------H 423
           G     GE       +   + + Y    + L+     G   +AL + +            
Sbjct: 446 GS---GGERDTKKRPEQGRIAAAY-CDVIILADEDPRGEDPVALLEMIAAGAPHKKLDSE 501

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +              S     D V++  
Sbjct: 502 LFIIPDRKAAIRKAFSLANPHDAVLLLG 529


>gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc sp. PCC 7120]
 gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Nostoc sp. PCC 7120]
          Length = 496

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 169/480 (35%), Gaps = 47/480 (9%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL---- 58
               +LL  +    +   ++    V GI  +S +    + F  + G   DG +F      
Sbjct: 1   MKLRELLATVDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFWPSAIA 60

Query: 59  ----------HAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                      AV+K       +V+ + +M  +  +++   +G       L  +      
Sbjct: 61  SGAIAAIVSPQAVEKNPPHDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLVGVTGTNGK 120

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFG 163
            +   +I    +  K +T  M T+             +    + +   LA+      +FG
Sbjct: 121 TTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQAVNAGCEFG 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L + R L       + V + +   HL   S +E+  +AKA +F      G  
Sbjct: 181 VMEVSSHALAQGRVL--GCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPEYLKGRA 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +N DD++ + L     AL  + ++S+  +  +AD  +             +     ++ 
Sbjct: 239 IINADDTYGQRL---IKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPEGNVS 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G +  +N+L  +G V  L  ++     A+  F    GR +R +   +Q    ++
Sbjct: 296 FRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQINPDQDISVIV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y   P S++   ++L    P   GR I V G     G+  ++    + ++++     
Sbjct: 356 D--YAHTPDSLE---NLLKAARPFIPGRMICVFGC---GGDRDRTKRPKMGKIVAEL-AD 406

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +++  +            +   +P ++                     GD V++  K 
Sbjct: 407 LAFVTSDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466


>gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 504

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 162/488 (33%), Gaps = 55/488 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       DLL      S  +V       I +DSR I   + F AI G   DG  +I HA
Sbjct: 1   MKTYRNLSDLLH----QSKKLVANVKFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHA 56

Query: 61  VQKGAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGA--LNKLAVAARLRSKATIIAI 113
           + +GA  ++  ++ +            IP+  V ++          +   L  K  +I +
Sbjct: 57  ISRGASAIIAESNSLTKEDEFIKFLNQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGV 116

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPV 158
           TG+ GKTT   ++      I +  A +G+  N +                   +  +M +
Sbjct: 117 TGTNGKTTVSHIVAQLAKLIGQKSAVMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFL 176

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGL 217
           +    I  + +S  G  +  T  +    A+ T I   HL   + IE    +K ++F E  
Sbjct: 177 EKSVKIVAMEVSSHGLDQGRTCSLSFSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHD 236

Query: 218 EKTGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            K    F+  DD            S A+ I                 K +    Q+ +  
Sbjct: 237 CKNRVFFI--DDPVGSKWIKDFPNSCAVSINHKNKLNLLNRPILYATKIEYLYNQTIIRF 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                + E+    +G     N ++ +  + ++   +   IK      P  G   R +   
Sbjct: 295 NSDWGNGEIRTSFLGEFNVANFMLAIASLLMIGYPIHLLIKNSKRVSPVIG---RMQLVS 351

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +     +ID  Y  N  S+K     L  I  H  G+   V G     G   +     +  
Sbjct: 352 HYNPRVIID--YAHNSDSLK---QCLISIRKHFGGKIWCVFGC---GGSRDKGKRAIMGR 403

Query: 395 VLSLYNISHVWLSGFHVLA------LKDALPRSIH---VHYSETMDGLFLFIQSSLVDGD 445
           +   Y+   V ++  +          K+ L    H   + Y         +  S     D
Sbjct: 404 IAEKYS-DFVIITDDNPRFEDPKKIFKEILRGCTHLESIRYFPERKYAIRYSISRAKPND 462

Query: 446 VVVV--KS 451
            V++  K 
Sbjct: 463 TVLIAGKG 470


>gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 515

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 95/494 (19%), Positives = 161/494 (32%), Gaps = 71/494 (14%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           +A+        P   + G+++DSR +  + AF AIKG   DG DFI  A+  GA +++  
Sbjct: 11  KALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQ 70

Query: 72  TD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           TD       M     S+ I ++ +  +L AL           K T +A+TG+ GKT+T +
Sbjct: 71  TDDSEAHGQMEMRDHSVIISLYELPQMLSALAAAF-YDYPAQKMTTVAVTGTNGKTSTVQ 129

Query: 125 MLTIALSSIKKTYACIGSYNNHI-------GVPLTLARMPVD---------------VDF 162
           +LT    ++    A IG+  + +             A    D               V  
Sbjct: 130 LLTQLKDALGTRSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRH 189

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE     L + R  T  V+  IAV T +   HL     +EE   AK  +         
Sbjct: 190 AAFEASSHALVQGRLGT--VKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLL-CQPGLKA 246

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------------FQLRKWKQCSE 268
           + LN +D              I  I++ G  ++AD                       S 
Sbjct: 247 VVLNANDDESNKW-DNVADNAITRIWT-GIDESADGALFRAHNNPQSRHCFATNASYHSG 304

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E+     S  +     G     N+L  +G +       D  +KA++   P  GR +
Sbjct: 305 GCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRME 364

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +               Y   P +++    VL     H  G+   V G   +     +  
Sbjct: 365 VFPVPGAANLVV----DYAHTPDALE---KVLLSAKFHTAGKVWCVFGCGGDRDTGKRPL 417

Query: 389 HIDLAEVLSLYNISHVWLS-----GFHVLALKD----ALPRSIHVHYSETMDGLFLFIQS 439
                   +      + ++          ++       L  S         +       +
Sbjct: 418 MGQ----AAEAGADAIVITTDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLA 473

Query: 440 SLVDGDVVVV--KS 451
                D+++V  K 
Sbjct: 474 HADKSDIIIVAGKG 487


>gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 491

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 151/459 (32%), Gaps = 35/459 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+        
Sbjct: 9   DVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDG 68

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +      V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 69  LP-VPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 136 TYACIGSYNNHIGVPLT---------------LARMPVDVDFGI-FELGMSHLGEIRFLT 179
               +G+    +                    LA++  D    +  E+    L + R   
Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSSHALDQGR--V 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V   +AV T +   HL     + +  +AKA++F          +N DD+F   L A  
Sbjct: 186 DAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLK-AAVVNLDDAFGHTLFAAL 244

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    S     +A    +  +         + ++G+   V    +G     N+L  
Sbjct: 245 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAV 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  +          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD-- 416
           L     H + R I V G   E     +     +AE+   +  ++     G    A+    
Sbjct: 362 LRS---HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADI 418

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                R                        D+V++  K 
Sbjct: 419 LRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457


>gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
 gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
          Length = 474

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 162/430 (37%), Gaps = 51/430 (11%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAV 100
           G   D GH     +   GA +VV +T +              IPV     +L  L +   
Sbjct: 61  GVRVDIGHR---ASNIDGADVVVTSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  +    ++      T+   G  N+      T AR+  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNS----AGTNARLGQ 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
              + + E   S    +      ++P  A++T I   H+  +     ++ +   E    L
Sbjct: 165 S-RYLVAEADESDASFLH-----LQPMSAIVTNIDADHMHTYGGDFAQLENTFIEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QL 276
              G   +  DD     L  + +    + +  +G S++AD +    +Q    +   V + 
Sbjct: 219 PFYGVAVMCVDDPVVRKLLPRVN----RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRA 274

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +G+ +EV  +  G H   N L  + + +   AD +  I+ L+ F     R         +
Sbjct: 275 EGEPLEVSLNMPGRHNVLNALAAIAVSADEGADDEAIIRGLNNFTGVGRRFDVQGEYHFE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G    + + Y  +P  + A I  + +  P    RR+A+L         +Q  + D  EVL
Sbjct: 335 GGSATLVDDYGHHPREVAATIDAIREGWPE---RRLAMLFQ-PHRYTRTQDLYEDFVEVL 390

Query: 397 S---------LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           S         +Y      + G    AL  +L  R +   + +  D L   + S L DGD+
Sbjct: 391 SGVDVLLMLEVYAAGEDPIPGADARALCRSLRKRGLEPVFVDDPDKLAGLLASQLQDGDL 450

Query: 447 VVVKSSNSCG 456
           +V + + + G
Sbjct: 451 LVTQGAGNVG 460


>gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 499

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 165/463 (35%), Gaps = 42/463 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTD 73
             I       +N ++  S+ +     FF+IKG + DGH +I  A+ +GA  V    +   
Sbjct: 14  KHIFGPASQTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVAVFGTSIEEL 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALS 131
            + S          VDDV   +   +      +   I  I +TG+ GKTT    +   L+
Sbjct: 74  RLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLT 133

Query: 132 SIKKTYACIGSYNNH--------------IGVPLTLARMPVD-----VDFGIFELGMSHL 172
            +K     IG+                      + L ++  D      +  + E+    +
Sbjct: 134 LLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAI 193

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            + R     +   +A+ T ++  HL      E     K ++F+  +      +N DD   
Sbjct: 194 DQQR--VEDIYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQAKH---AVINIDDQDM 248

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               ++    G K  YS   +  A  Q +        S+ ++  +G+S +V     G + 
Sbjct: 249 GKDLSRLFE-GPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYGDYN 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  +G        ++  I  L      EGR +      NQ     +   Y   P +
Sbjct: 308 IANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQK----VILDYAHTPVA 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYN----ISHVWL 406
           +   +  + ++  +     IA +G  D  +M ++++       E++   +         +
Sbjct: 364 LTRLVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHDPNVI 423

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    +  P + ++H + T     L   S     D++++
Sbjct: 424 VDQVMTGFSN--PSASNIHRAPTRTEGVLKSLSLGKPNDIILL 464


>gi|269215182|ref|ZP_05987878.2| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
 gi|269208127|gb|EEZ74582.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
          Length = 469

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKS 280
             D      +  K      K   ++G    AD      +    Q    V +Q      +S
Sbjct: 217 CVDSEHVRAILPKVS----KPYATYGLDDAADIYATDIENVGAQMKFTVHVQMKGHEQES 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   LLE
Sbjct: 449 NMGAGSIN--RVPAALLE 464


>gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 151/458 (32%), Gaps = 42/458 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +    +  + G++ DSR + P   F A+KG  +DG  F+  AV +GA  ++        I
Sbjct: 9   LAENGETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFVPQAVAQGAAAIL----SDGGI 64

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           G++S+P    D+   AL   A          ++A+TG+ GK++T +      S      A
Sbjct: 65  GAVSVPHVMADEPRRALALAAKRFYGEQPEFVVAVTGTNGKSSTVDFARQIWSRAGIKAA 124

Query: 139 CIGS-----------YNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLV 182
            +G+             +    P+T++          V     E     L + R     V
Sbjct: 125 SMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALARQGVTHCAMEASSHGLEQHRL--DGV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHA 241
                    +   HL   + +E    AK  +F  L   G    +N D    E ++  +  
Sbjct: 183 DLSAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAPRGIPAIVNADSDHREAVEETARK 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTL 300
            G++ + SFG     D  + +    +    + +  +    + +    IG     N L   
Sbjct: 243 AGLQ-VVSFGWRGE-DLWIDELMPKATGQTLFLYWKDVEQKPIELPLIGEFQTLNALAAA 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  +       L+   P +GR + +      G    +D  Y   P  +      L
Sbjct: 301 ALCLSLGMEFPAVADGLANLKPVKGRLE-FVGKTETGAAVFVD--YAHTPDGLDVL---L 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
             + PH  GR   + G     G+        + E+ S      +                
Sbjct: 355 RAVRPHTAGRLKVIFGC---GGDRDAKKRPIMGEIASRQADDVIVTDDNPRSEDPAKIRA 411

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L  +               +   L  GD +V+  K 
Sbjct: 412 SVLGGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKG 449


>gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 495

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 151/459 (32%), Gaps = 35/459 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+        
Sbjct: 13  DVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDG 72

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +      V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 73  LP-VPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT---------------LARMPVDVDFGI-FELGMSHLGEIRFLT 179
               +G+    +                    LA++  D    +  E+    L + R   
Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSSHALDQGR--V 189

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V   +AV T +   HL     + +  +AKA++F          +N DD+F   L A  
Sbjct: 190 DAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLK-AAVVNLDDAFGHTLFAAL 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    S     +A    +  +         + ++G+   V    +G     N+L  
Sbjct: 249 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAV 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  +          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 309 AGALWAMEFAPAQIASVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD-- 416
           L     H + R I V G   E     +     +AE+   +  ++     G    A+    
Sbjct: 366 LRS---HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADI 422

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                R                        D+V++  K 
Sbjct: 423 LRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 461


>gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
 gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
          Length = 497

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 158/477 (33%), Gaps = 40/477 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL  I   S    P   +  + GIS +S +  P + F  + G   DG +F   A+
Sbjct: 1   MKLQELLTTIPLVSPISSPIALETEITGISTNSHACQPGDLFIGLPGTRVDGGEFWRSAL 60

Query: 62  QKGAGLVVVNTDMVASIGSL-SIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVG 118
           + GA   +++    A         V  V D     A               +I +TG+ G
Sbjct: 61  ETGAVAAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTLKLIGVTGTNG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDF 162
           KTTT  ++   LS      A  G+           A                      + 
Sbjct: 121 KTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEI 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L + R         + V T +   HL     +E+  +AKA++F      G 
Sbjct: 181 AVMEVSSHALAQGR--VQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGK 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N DD++ + L A   +L  + + ++      ADF  +            +      +
Sbjct: 239 AIINLDDAYGQRLAA---SLSPQQVLTYSVCDARADFYTKDLHYQPTGVQGVMVTPQGEI 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G +   N+L  +  V     D+   I  +  F    GR +R   A +Q    +
Sbjct: 296 AFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERVSIAPDQDISVI 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P S++   +VL    P   GR I V G   +     +     +A  L+   I
Sbjct: 356 VD--YAHTPDSLE---NVLKASRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAI 410

Query: 402 ---SHVWLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +         +  +   +P  I V               +   GD V++  K 
Sbjct: 411 VTSDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIAGKG 467


>gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena
           XCL-2]
 gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 505

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 169/488 (34%), Gaps = 55/488 (11%)

Query: 4   LWTFHDLLQAIQ---GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +    D+L   +      +    +  V+ ++IDSR +    AF A++G    G      A
Sbjct: 1   MKQLADILSFFKLPESVLVNGATEVDVSALTIDSRQVERGTAFIALQGGQSHGMAHAEQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS-------IPVFGVDDVLGALNKLAVAAR--LRSKATII 111
           +++GA  ++ +   +               PV  V  +   L   A         +  +I
Sbjct: 61  IKQGASCILTDRAGLVEFNHSHQQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSERVNVI 120

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACI--------GSYNNHIGVPLTLARMP------ 157
            +TG+ GKT++   +   L+++ +  A +        G+ +  I   + + R+       
Sbjct: 121 GVTGTNGKTSSSHYIAQMLTALNQKVALLGTLGNGWFGNLHPSINTTVDVVRLNHLLNGF 180

Query: 158 --VDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                D+ + E+      LG I+     +   +  +T +   HL      E   +AK ++
Sbjct: 181 AEEQADYVVMEVSSHAIELGRIK----GIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKL 236

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWM 272
           F     +    +N DD   + L  +       TI  +  ++  AD               
Sbjct: 237 F-LTYSSRYQVINADDKVGQALFHEL--SNKDTIVRYSQQTAQADIVCLDSHLSRTGIHG 293

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              LQG S+      +G    +N+L  + +++    +     KAL      +GR +    
Sbjct: 294 TFTLQGGSIPFDVPLMGQFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELL-- 351

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              Q  +  +   Y   P +++A +  +       +     V G   +     +    ++
Sbjct: 352 --TQPGYPSVLIDYAHTPDALEAILKAVQHHVSDRDATVWVVFGCGGDRDTGKRPLMGEI 409

Query: 393 AEVLSLYNISHVWLSGFHVL-----ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD 445
           AE  +    + V L+  +       A+   + + +H  VH          F        D
Sbjct: 410 AETYA----NEVVLTDDNPRTELPDAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHD 465

Query: 446 VVVV--KS 451
           +VV+  K 
Sbjct: 466 IVVIAGKG 473


>gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 516

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 144/421 (34%), Gaps = 45/421 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPH----YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +  DSR I   + FFA    H     DG  FI  A++ GA  VV +   + S  +     
Sbjct: 26  VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVVFDLKDMDSQLTDHPQC 85

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           F V ++     +L          +  II +TG+ GKT+  + L  AL +     A +G+ 
Sbjct: 86  FAVKNLAAQAGQLCSQWYGHPSKELNIIGVTGTNGKTSITQWLAQALDASNHRTAVLGTL 145

Query: 144 NNHIGVPLT---------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                  L                LA +       +     SH      +        A 
Sbjct: 146 GTGFPGALVQTGYTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIA-GTDIQCAA 204

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T +   HL     + + A AKA++F+  GL+      +N DD+F   L     A     
Sbjct: 205 FTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLKH---AVINLDDAFGRELAMNLLAKDGMK 261

Query: 247 IYSFGKSKNA------------DFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMA 293
           ++++  S +A                ++          + V  +  S ++    +G    
Sbjct: 262 VWAYALSPSAFEGFEKFGDRLQRIYAKETTLSGAGYDSIFVYGKVGSAQLHIPLLGEFNV 321

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPAS 352
            N L     +       + A + +S  +P  GR +  R     +    L    Y   P +
Sbjct: 322 SNALAVWATLLSQGMRCEVAAQKVSQLNPVLGRMELIRFGKPQKAGSLLAVVDYAHTPDA 381

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++  +  L  ++    G+   V G   +     ++    +AE     N  H+ ++  +  
Sbjct: 382 LEKTLQALRPVADQRGGKIWCVFGCGGDRDAGKRALMGAVAE----RNADHILITSDNPR 437

Query: 413 A 413
           +
Sbjct: 438 S 438


>gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           denitrificans OS217]
 gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella denitrificans OS217]
          Length = 502

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 88/491 (17%), Positives = 160/491 (32%), Gaps = 60/491 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L                + +S+DSR +     F A+ G   DG  +I  A  +
Sbjct: 1   MMRLSDIL----APWFHYAGVESASSMSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQ 56

Query: 64  GAGLVVVNTDMVASIGSL--------SIPVFGVDDVLGALNKLAVAARL--RSKATIIAI 113
           GA   +V+TD   S G +          PV     +   L+ +A         K  +I I
Sbjct: 57  GAVAALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGI 116

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------- 165
           TG+ GKT+  +++    S +    A +G+  N +   L  +         +         
Sbjct: 117 TGTNGKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQLHDFDV 176

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G ++     V   IAV T +   HL     +   ASAK  +F+    
Sbjct: 177 KGADICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRLFQF-PS 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG- 278
                LN DD        +  A   +  +S   +  A +   K          +      
Sbjct: 236 LKYALLNLDDDTGAQWFEELAATK-RKGFSVSPNAKACYYTDKLHFDDAGVQGDFYYHDF 294

Query: 279 -------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                      +V   +G     N+L  +  + +    +   +       P  GR +R+ 
Sbjct: 295 GENAVSQHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAGRMERF- 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            +L QG   ++D  Y   P +++ A+  L     H  G+   V G   +  +  +     
Sbjct: 354 -SLPQGASLVVD--YAHTPDAIEQALKALR---IHCHGQLWCVFGCGGDRDKGKRPLMAQ 407

Query: 392 LAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            AE  +           +     + G  +  L       + V            + +   
Sbjct: 408 AAERFADKLMVTSDNARSEDPSAIIGDVLKGLTQPENALMEVDRV----SAVKRVATLAK 463

Query: 443 DGDVVVV--KS 451
            GD+V++  K 
Sbjct: 464 AGDIVLLAGKG 474


>gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
 gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
          Length = 471

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 140/378 (37%), Gaps = 32/378 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A L +    +A+ G+ GKTTT  MLT+ L       A        IG  L
Sbjct: 100 LRVLHRSEALAALMAGRRAVAVAGTHGKTTTTSMLTVVLQHAGLDPA------YCIGGQL 153

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  D   G   +  +   +  FL +   PHIAV+T +   HL N+   E++    A
Sbjct: 154 VTTGLGADDGTGDVFVAEADESDGSFLRY--SPHIAVVTNVEADHLDNYGAFEKVKENFA 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E +E  G +  + DD     L   +   G+ T+ ++G+S  AD +L  +      S 
Sbjct: 212 RFVERIEPGGALVASADDPVAGELAGAARERGL-TVVTYGESAGADLRLTGFTPRGLGSR 270

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             ++  G   E+     G H A N    L +  +L  D  T    L+ F    G  +R  
Sbjct: 271 FAIEGLG---ELTLEVPGRHYAHNATAALAVARLLGCDFATIRDGLASFT---GSMRRLE 324

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQ 386
                G   +  +SY  +P  + A +    +      +    GR +AV      +   ++
Sbjct: 325 RKGEAGGVQVF-DSYAHHPTELTADLQATREYLDQLAAEGRTGRIVAVF--QPHLYSRTR 381

Query: 387 SFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            F  +            VL +Y        G     + DA+P    V Y    + +   +
Sbjct: 382 FFATEFGRALGLADVAVVLDVYGAREDPEPGVSGRLIADAVPEGTRVEYVPVREQVPQVV 441

Query: 438 QSSLVDGDVVVVKSSNSC 455
                 GD+V+   +   
Sbjct: 442 AELARPGDLVLTLGAGDV 459


>gi|322421361|ref|YP_004200584.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
 gi|320127748|gb|ADW15308.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
          Length = 461

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 160/435 (36%), Gaps = 47/435 (10%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIGSLS-------IPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA +  A   VVV +  V              IPV    ++L  L ++         
Sbjct: 54  FIGHAAENVAQADVVVISSAVHEDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  M+   L+         G  +  + +   L  +  +   G  + 
Sbjct: 108 ---VAVAGTHGKTTTTSMVATLLAK--------GGIDPTMVIGGRLNSLGSNARLGQGQF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            ++   E      L+ P IAV+T I   HL  +SGIEEI     E    +   G   L  
Sbjct: 157 LVAEADESDGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKVPFYGLAVLCL 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D+     +  +      K   S+G S  ADF+    +     +      +G  + E+   
Sbjct: 217 DNGNIADILPRVK----KRFTSYGLSAQADFRATDVRLSGFSTSFVAHHKGVKLGEITFS 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L    +T  +    F    G G+R+          ++D+ Y
Sbjct: 273 MPGAHNVLNALAAIAVAMELDIPFETIQEGFKAFG---GVGRRFSLKGEVNGIMVVDD-Y 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGE-LSQSFH-IDLAEVLSLY 399
             +P  ++A ++     +   E R + V          E+ E   ++FH  D+  +  +Y
Sbjct: 329 GHHPTEIRATLAAAK--AGFAENRLVVVFQPHRYSRTKELFEDFVKAFHDADVLILTDIY 386

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 + G     L   + R     V +    D L   ++  L  GD+++   + +   
Sbjct: 387 AAGEAPIEGVTAEMLAARVRRHGQKDVTWLPERDKLCEHLERVLAPGDLLLTLGAGNV-- 444

Query: 458 YRLINLLLEEFPAIQ 472
           +++   +LE   A +
Sbjct: 445 WQVGEAMLERLKAAE 459


>gi|78221634|ref|YP_383381.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
 gi|109892706|sp|Q39YL8|MURC_GEOMG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78192889|gb|ABB30656.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
          Length = 461

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 144/418 (34%), Gaps = 42/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       IPV    ++L  L ++            IAI G+ GKTTT  M+
Sbjct: 73  AVHDDNPEVMEAKRRMIPVIPRAEMLAELMRMKYG---------IAIAGTHGKTTTTSMV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             AL          G  +  I +   L  +  +   G  +  ++   E       + P I
Sbjct: 124 ATAL--------THGGIDPTIVIGGKLNTLGTNAKLGQGQFLVAEADESDGSFLKLSPTI 175

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   HL  +  GIE+I     +    +   G   L  +D     +  +      K
Sbjct: 176 AVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVK----K 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD +    +     +      +G  M EV     G H   N L  + +  
Sbjct: 232 RFVTYGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFAMPGAHNVLNALACIAVAM 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        +  + F    G G+R++        T++D+ Y  +PA ++A    L+   
Sbjct: 292 ELDVPFAQIQEGFAKFG---GVGRRFQVKGEVNGITVVDD-YGHHPAEIRA---TLAAGK 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKD 416
                RR+ V           + F          D+  +  +Y+     + G     L +
Sbjct: 345 SGWPDRRLVVAFQPHRFSRTKELFAEFVTCFYDADVLVLTDIYSAGEAPIEGVTAERLAE 404

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            + +     V Y    + L   +   +  GD+V+   + +   ++    LL +    +
Sbjct: 405 NIRKHGQRDVTYIADREALPDHLLQIVRPGDIVLTLGAGNI--WQTGEALLRKLETAE 460


>gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
 gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
          Length = 489

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 92/462 (19%), Positives = 155/462 (33%), Gaps = 50/462 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +  +    + GI+ DSR  AP   F A+ G   DG  ++  A             +   
Sbjct: 18  LLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKDA-----VAKGAVAVVSGH 72

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V D    L+  A     +   T++A+TG+ GKT+    +    +      
Sbjct: 73  AVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVASFVRQIWAFAGHAA 132

Query: 138 ACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL 181
           A IG+                  P+TL  +  +     V     E     L + R     
Sbjct: 133 AQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRL--DG 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSH 240
           V    A  T +   H+     IE+  +AK  +F+ L + G    +  DD + +     + 
Sbjct: 191 VHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAAR 250

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G++ + + G++      L++ +    +  +EV   G   EV     G     N L+  
Sbjct: 251 EAGLE-VRTVGRNGQ-YLTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVANALVAA 308

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+         TA+KAL       G   R           L    Y   P +++   +VL
Sbjct: 309 GLAMSTGVPAATALKALEKLVGAAG---RLELVGQTKNGALAYVDYAHKPDALE---NVL 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---------SHVWLSGFHV 411
           + + P   GR I V G   +  +  +    ++A  LS   I             +    +
Sbjct: 363 TSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEVM 422

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A   AL                    S L  GD ++V  K 
Sbjct: 423 AAAAGALEIG-------DRAEAIRHAVSMLSHGDTLIVAGKG 457


>gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21]
 gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21]
          Length = 461

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 157/439 (35%), Gaps = 55/439 (12%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIGSLS-------IPVFGVDDVLGALNKLAVAARLRSK 107
           F  HA +  A   VVV +  V              IPV    ++L  L ++         
Sbjct: 54  FFGHAAENVANADVVVISSAVHEDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+   LS         G  +  I +   L  +  +   G  + 
Sbjct: 108 ---IAVAGTHGKTTTTSMVATILSK--------GGIDPTIVIGGRLNSLGTNARLGQGQF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            ++   E      L+ P IAV+T I   HL  +SGIEEI     E    +   G   L  
Sbjct: 157 LVAEADESDGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCL 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D+     +  +      K   S+G S  ADF+    +     +      +G  + E+   
Sbjct: 217 DNGNVADVLPRVK----KRFTSYGLSAQADFRATDVRLSGFSTSFVAHHKGVRLGEITFS 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L    +T  +  + F    G G+R+          ++D+ Y
Sbjct: 273 MPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFG---GVGRRFHLKGEANGIMVVDD-Y 328

Query: 347 NANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEV 395
             +P  +KA +                 PH   R   +  D        ++FH  D+  +
Sbjct: 329 GHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEDFV------KAFHDADVLIL 382

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             +Y      + G    AL + + R     V +    D L   ++  L  GD+++   + 
Sbjct: 383 TDIYPAGEAPIEGVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVLAPGDILLTLGAG 442

Query: 454 SCGFYRLINLLLEEFPAIQ 472
           +   +++   +L    A +
Sbjct: 443 NV--WQVGETMLLRLKAAK 459


>gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate
           ligase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 146/389 (37%), Gaps = 31/389 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +            ++GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 56  LGDLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAA 115

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            ++ +        +  +PV  V++  G + +LA     R  +    I ITG+ GKTTT  
Sbjct: 116 AILTDPTGAERAAATGLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAY 175

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L         +G+    IG     +    P   D       M   G     +   
Sbjct: 176 LVEGGLRGTGHHTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVS 235

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           +AV   ++P H+   S +E+   AKA +F   E++    +N DD+
Sbjct: 236 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQAKAGLFTP-ERSRLGVVNLDDA 294

Query: 231 FFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
           +   L  ++       + +F      +AD++       S  S    V   G+ +      
Sbjct: 295 YGRRLVGEATV----PVLTFSAEGRADADWRAEDLVLGSHDSTFTAVGPGGERISATAPL 350

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  ++    D   A + ++      GR +R       G   L    Y 
Sbjct: 351 PGPFNVANTLAAIATLAAAGLDPKAAAEGVAAVPGVPGRLERVE----AGQPYLAVVDYA 406

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376
               ++++ +  L +++   EGR   V+G
Sbjct: 407 HKTDAVESVLRSLREVT---EGRLHVVIG 432


>gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 488

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 169/480 (35%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  ++ DSR +     F  I G  +DGH ++    +KG
Sbjct: 1   MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D+ A  G   + V   ++   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAIIAERDIEAPKG---VTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             ++   L  +      IG+    I                +    A+M  +    +  +
Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    KA +F+  +       
Sbjct: 177 EVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQCKLG---IA 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GK-SME 282
           N DD ++E +   +       + +FG S  AD +       S+  ++ V     GK   +
Sbjct: 234 NIDDPYYEDIFRGATC----KVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFD 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +        +   +AL   H K     R         FTL+
Sbjct: 290 VEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKG----RIEMIKVSDDFTLM 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  S+++ ++ L +  P    R + V G     G  S+    ++ EV       
Sbjct: 346 ID-YAHNAMSLESLLTTLKEYEPK---RLVCVFGC---GGNRSKDRRYEMGEVSGRLADL 398

Query: 403 HVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 399 TIITSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458


>gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
          Length = 474

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 177/482 (36%), Gaps = 70/482 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   L             +  V G+S +S++I   +AFFAIK    +G+DFI  A
Sbjct: 1   MTP--TLKQL-----------FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADA 43

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +        + +  V  V+D+   L++       +   T+IA+TG+ GK+
Sbjct: 44  LEKGAALVITD-----DKKNTTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKS 98

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------------MPVDV 160
           +    +    S I +  A IG+    +                                +
Sbjct: 99  SVVSYIAQIYSLIGQKAASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGI 158

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           D+  FE     L + R     ++ ++A  T+ +  HL      E    AK ++F + L K
Sbjct: 159 DYLAFEASSHGLDQQRL--GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAK 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN D    E +K     L    I       N + ++ K     +   +      K
Sbjct: 217 DGIAILNSD---IEEIKFIKDYLDKHKIKYLCVGANGNCKITKTNSSLKGQNINFIFDNK 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + +     IG   A N+L+    V   + D    I AL+     +GR +R          
Sbjct: 274 NYDFDTPIIGSFQASNLLIAGLSVYYTSFDFSKVINALTKVKAVKGRMERV-------NR 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T I   Y   P +++ A++ L  I     G+   + G         +     +A  ++  
Sbjct: 327 TNIFIDYAHTPDALEKALTELKNIKAK-GGKLSVIFGCGGNRDTTKRKLMGKIAASIA-- 383

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVH-YSETMD--GLFLFIQSSLVDGDVVVV-- 449
              +V ++          A++  +   I    Y E  D      +  ++L   D++++  
Sbjct: 384 --DNVIVTDDNPRHEDPKAIRQEIISGIVTTNYIEIADRKEAIKYGINNLKKDDILLIAG 441

Query: 450 KS 451
           K 
Sbjct: 442 KG 443


>gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
 gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
          Length = 495

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 157/456 (34%), Gaps = 44/456 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SL 81
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G      
Sbjct: 26  VITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIVQGANLVLAQADAEHPNGVSEYRQ 85

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + D+   L+++A       +  +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 86  QVPVIYLADLGTHLSEMAGRLYGDHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 145

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 146 TTGNGFLSALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
           V + ++  HL     +E  A+AK  +F          +N DD+      K    A+G+  
Sbjct: 206 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G ++      R+ +       +         E+    IG   A N+L+ L  +  L
Sbjct: 265 VTKPGTAQA--IWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNLLLALATLLSL 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +  +       P  GR + ++              Y   P +++ A+  L     H
Sbjct: 323 GFEKNALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
             G+  A++G   +     +     +AE  +      V L+  +  +         +   
Sbjct: 376 CAGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 432 LNHPELAHIEHNRFQAASYALQQAGAQDIILLAGKG 467


>gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem]
          Length = 461

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 159/435 (36%), Gaps = 47/435 (10%)

Query: 56  FILHAVQKGAGLVVV--------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F  HA +  A   VV        +   V       IPV    ++L  L ++         
Sbjct: 54  FFGHAAENVANADVVVISSAVHDDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+   LS         G  +  I +   L  +  +   G  + 
Sbjct: 108 ---IAVAGTHGKTTTTSMVATILSK--------GGIDPTIVIGGRLNSLGTNARLGQGQF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            ++   E      L+ P IAV+T I   HL  +SGIEEI     E    +   G   L  
Sbjct: 157 LVAEADESDGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCL 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D+     +  +      K   S+G S  ADF+    K     +      +G  + E+   
Sbjct: 217 DNGNIADVLPRVK----KRFTSYGMSAQADFRATDVKLSGFSTSFVAHHKGVRLGEITFS 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L    +T  +  + F    G G+R+          ++D+ Y
Sbjct: 273 MPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFG---GVGRRFHLKGEANGIMVVDD-Y 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMG-ELSQSFH-IDLAEVLSLY 399
             +P  +KA +      +   E R + V          E+  E  ++FH  D+  +  +Y
Sbjct: 329 GHHPTEIKATLGAAK--AGFAENRLVVVFQPHRYSRTKELFEEFVKAFHDADVLILTDIY 386

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 + G    AL + + R     V +    D L   ++  L  GD+++   + +   
Sbjct: 387 PAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERVLAPGDILLTLGAGNV-- 444

Query: 458 YRLINLLLEEFPAIQ 472
           +++   +L    A +
Sbjct: 445 WQVGETMLLRLKAAK 459


>gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces coelicolor A3(2)]
 gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 178/479 (37%), Gaps = 52/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            + GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAA 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +P   VDD    + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L +  K+   IG+    IG     +    P   D       M   G     +   
Sbjct: 135 LVEGGLRTA-KSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVS 193

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           IAV T ++P H+   SG+E+   AKA++F   +++    +N DD 
Sbjct: 194 SHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTP-KRSRLGVVNVDDE 252

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           +   L  ++       + ++      +AD++  + +     S   V   +G+ +      
Sbjct: 253 YGRRLAKEATV----PVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPL 308

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  ++    D  +A   ++      GR +R      Q FF ++D  Y 
Sbjct: 309 AGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLER--VDEGQPFFAVVD--YA 364

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++++ +  L +++   EG+  AVLG     G+   +    +   ++ +  + V  S
Sbjct: 365 HKTDAVESVLRALRKVT---EGKLHAVLGC---GGDRDTTKREPMGAAVARFADTAVLTS 418

Query: 408 G----FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   LA+         ++P      V   E          +    GD V+V  K 
Sbjct: 419 DNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 477


>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 491

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 110/466 (23%), Positives = 190/466 (40%), Gaps = 57/466 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G + +  +  +S DSR I     FF + G  +DGH F   A +KGA  +V +  +     
Sbjct: 19  GTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQFAKMAEEKGAVCLVASKHV----- 73

Query: 80  SLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            + IPV  V+DV+   A   +          ++I +TG+ GKTTT  ++       KK+ 
Sbjct: 74  DVKIPVVYVEDVIKTMAFLAMRFYHDPSGSMSLIGVTGTNGKTTTTHIIRHLFEKNKKSC 133

Query: 138 ACIGS-----YNNHIGVPLT----------LARMPVDVDFGIF----ELGMSHLGEIRFL 178
             IG+     +  HI  P T          LA+M  +   G+F    E+    L   R  
Sbjct: 134 GMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLAKMKEE---GVFICTSEVSSHALVMGR-- 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELL 235
              V  ++AV T +   HL     + E   AK+ +F  L          LN DD++ +++
Sbjct: 189 VQNVDFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFAQLGSGNNGKIAILNKDDTYAKVI 248

Query: 236 KAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            ++ +A    TI+ +  K  +A+F  +     + ++   +  QG    V+   IG    Q
Sbjct: 249 ASRCNA----TIWYYSTKDPSAEFYAKDMVYLASKTEFTLVFQGLEYPVISPLIGEFNVQ 304

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L     L   ++  I+ALS F   EGR +     L  G   ++D  +   P  ++
Sbjct: 305 NALAALAAYYALERHLEKGIEALSSFSGVEGRMQTIENDL--GIHAIVD--FAHTPDGLE 360

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFH 410
            A++ L +++     R I ++G   + G    S   DL  +   Y+   V+ S       
Sbjct: 361 KAMAALKKLN---HKRIITMIG--HDGGNRDNSIRQDLGRIALEYSDYVVFTSENPREED 415

Query: 411 VLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            + +   +   + VH+ E           + +    GD++    K 
Sbjct: 416 PMKIMKEMVNGLEVHHYEFVKDRHKAIDRVVALGQKGDILFFTGKG 461


>gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 490

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 166/479 (34%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +Q   +    +  +  ++ DSR +     F  I G   DGH +I    +KG
Sbjct: 1   MKLTALLERLQYEVVQGTKEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYIEEVGKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+V  D+        + V  V+D     AL   A       +  +I ITG+ GKTTT
Sbjct: 61  AAAVIVEKDVE---APKHMTVIRVEDTRYALALASAAYFGYPAEQLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+   L  +      IG+    IG  +  A              R  VD       + 
Sbjct: 118 TYMVKSILEEVGHKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKMVDAGCDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  +   I + T +   H+        E+    K  +F   +       N
Sbjct: 178 VSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFRQCK---IGIAN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEV 283
            DD +F+ +  ++       I +FG S+ AD +    +  +   ++ V          +V
Sbjct: 235 VDDPYFKDVFREATC----EIETFGFSEKADLRAEHAELVTRPGYLGVAYHVAGLMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +        +   KAL V   K     R         FTL+ 
Sbjct: 291 EIDIPGTFSVYNSLTAIAVCRHFNVPSEKIQKALKVAKVKG----RIEMVKVSDEFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ L +  P    R + + G     G  S++   ++ EV        
Sbjct: 347 D-YAHNAMSLESLLTTLKEYHPK---RLVCLFGC---GGNRSKTRRYEMGEVSGRLADLT 399

Query: 404 VWLSG----FHVLALKDALP---RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S          + D +    +     Y E         +   +   GDV+V+  K 
Sbjct: 400 IITSDNPRFEEPQEIIDDIKIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKG 458


>gi|189423738|ref|YP_001950915.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter lovleyi SZ]
 gi|229620044|sp|B3E3Y1|MURC_GEOLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189419997|gb|ACD94395.1| UDP-N-acetylmuramate/alanine ligase [Geobacter lovleyi SZ]
          Length = 456

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 145/414 (35%), Gaps = 42/414 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       +PV    ++L  L ++            IAI G+ GKTTT  M+
Sbjct: 73  AVQSDNPEVIEAKHRMVPVIPRAEMLAELMRMKYG---------IAIAGTHGKTTTTSMV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+        +      IG  L        +  G F +  +   +  FLT  + P I
Sbjct: 124 ATVLTHAGIDPTIV------IGGKLNTLGSNAKLGQGKFLVAEADESDGSFLT--LSPTI 175

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   HL  +  G+E+I          +   G   L  +D     +  +      K
Sbjct: 176 AVVTNIDADHLDYYTGGLEQIKDTFVSFINKVPFYGLAVLCQEDRNINEIIPRIK----K 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD +    K    Q+      +G  + E+  +  G H   N L    +  
Sbjct: 232 RFMTYGLSSQADLRATHVKLDGFQTTFTAHYKGYRLGEISFNMPGAHNVLNALACTAVAL 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D   +  + F    G G+R+     +    ++D+ Y  +PA ++A    L    
Sbjct: 292 ELDVPFDKIQEGFAQFG---GVGRRFTVKGEKNGIMVVDD-YGHHPAEIRA---TLGAAR 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWLSGFHVLALKD 416
                RR+ V           + F+         D+  +  +Y  S   + G     L +
Sbjct: 345 NGWPERRLVVAFQPHRYSRTKELFNEFVTCFYDADVLVLTDIYAASEQPIPGVSAERLAE 404

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              R     V Y    + L  ++   + +GD+V+   + +   ++    L++  
Sbjct: 405 ETRRHGQRDVTYIADRNDLPDYLAGIVKEGDIVITLGAGNI--WQAGEALVKRL 456


>gi|157963621|ref|YP_001503655.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella pealeana ATCC
           700345]
 gi|189082500|sp|A8H983|MURC_SHEPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157848621|gb|ABV89120.1| UDP-N-acetylmuramate--alanine ligase [Shewanella pealeana ATCC
           700345]
          Length = 489

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 147/406 (36%), Gaps = 42/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +   L IPV    ++L  L +             +A+ G+ GKTTT  ++
Sbjct: 89  AISADNPELVAAKELRIPVVRRAEMLAELMRYR---------HGVAVAGTHGKTTTTSLI 139

Query: 127 TIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                      T+   G  N+      T AR+     + I E   S    +      ++P
Sbjct: 140 ASVYGQAERDPTFVIGGLLNS----AGTNARL-GHSRYLIAEADESDASFLH-----LQP 189

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T I   H+  +   +E++ +   +    L   G   +  DD     L  +     
Sbjct: 190 MVSVVTNIEADHMDTYEGDLEKLKTTFVDFLHNLPFYGVAVVCIDDPIVRELIPRI---- 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGI 302
            + I ++G S++AD +   +KQ        V+  G   +++  +  G H   N L  + +
Sbjct: 246 GRRIVTYGFSEDADVRALDFKQTGYSCEFTVRRAGMDDLQLSVNLPGEHNVLNSLAAIAV 305

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +    + +  I AL+ F     R ++            + + Y  +P+ + A I     
Sbjct: 306 ATEDEIEDEAIITALADFQGIGRRFQQIGEFTTAKGEIKLVDDYGHHPSEVAATIKAARL 365

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLA 413
             P    R + +          ++  + D  EVLS          Y      + G    A
Sbjct: 366 GWPE--RRLVMIY--QPHRYSRTRDLYEDFVEVLSQVDCLLMLDVYAAGEAPIPGADSRA 421

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           L  ++     V   +  + + L   +   L DGD+++ + + S G 
Sbjct: 422 LCRSIRVRGQVEPVFVASTEQLETVLPEILQDGDLLLTQGAGSIGL 467


>gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus deserti VCD115]
 gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Deinococcus deserti VCD115]
          Length = 493

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 155/479 (32%), Gaps = 51/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              HDL  A+       +P   V G++ ++  + P  AF AI+G  +DGH F+    + G
Sbjct: 1   MRLHDLAAALN-VPTTSLPDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSFLQQVREAG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +    +  +P   V       A    A+A        ++ +TG+ GKTTT
Sbjct: 60  AVAVLG--EGMPDGMNSPLPYLTVPSARAALADAAAALAGHPSRALKVVGVTGTDGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI------------------GVPLTLARMPVDVDFGI 164
             +    L         + +    +                   V  TL  M       +
Sbjct: 118 SWLTRHLLREAGLQTGLLSTVGFELPDGELRHFPAHFTTPEAPQVQQTLQDMVAAGASAV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                SH   +      V   +AV T +   HL     +E   + K  + E         
Sbjct: 178 VLEASSHALALDR-VRGVDWDVAVWTHLTSEHLDFHGTVENYFADKRRLVERAP---FAV 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD +   L+  + A   +T YS      AD+Q    ++       +V     + +  
Sbjct: 234 LNADDPWTGQLRGVAPA---ETTYSL-DGAGADWQATDIQERLTGLHFQVNSPLGAFDAA 289

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N L  +   + L AD       L+ F    G   R       G    +  
Sbjct: 290 LPMIGRFNVANALAAMAAAAHLGADAAQLAAGLASFRGVPG---RMELVPAGGQEVRVIV 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +   P S++ A+S L   +    GR   ++G     G         L EV +      V
Sbjct: 347 DFAHTPPSLEKALSTLRATTT---GRLWVLIGSAG--GPRDPGKRAPLGEVATRLADHAV 401

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +             +  ++    +    ++            +  +   GD V++  K 
Sbjct: 402 FTEEDSRDTPLEDILREMERGARQGGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKG 460


>gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
 gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
          Length = 486

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 153/483 (31%), Gaps = 73/483 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG----PHY--DGHDFIL 58
            T  +L   +   +    P   V G++ DSR + P   F A+ G         DGH FI 
Sbjct: 1   MTLKELFAPLGQEA----PPLPVRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIP 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGS 116
            A+++GA  VV   D+      L +P   V D   AL                +  +TGS
Sbjct: 57  EALRRGAIAVVGEQDLT-----LPVPYARVADSRQALALLARRFYGEPDRALRLFGVTGS 111

Query: 117 VGKTTTKEMLTIALSS----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFG--- 163
            GK+TT  +L   L            +         +      P   A +    D G   
Sbjct: 112 KGKSTTAFLLHHLLEEAALLSTVGLRLGGEARPPIGHFTTPEAPEVYAFLREAADRGLRE 171

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA-HLSNFSGIEEIASAKAEIFEGLEKTG 221
            + E+    L   R     +   + V     P  HL      E   +AK  + E    + 
Sbjct: 172 AVLEVSSHALALKR--VEGLTFRVGVFVNFYPDDHLDFHGTPEAYFNAKTLLVER---SD 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN   +  E L+ + H L              +      ++  E     +       
Sbjct: 227 LAVLNTSLTHLERLRQRPHLL---------FGPGGEVWAEGVRE-EEGLRFTLHTPWGKG 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG H  +N L            ++  ++ LS F    G   R      + F  +
Sbjct: 277 EVHLPLIGAHNVENALAASAAALAAGVPLEKVLERLSGFPGVPG---RMEVVQEKPFRVV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  +     S++AA+  L    P  +GR + V+G   E     +    D+  V +    
Sbjct: 334 ID--FAHTGKSLEAALRTLR---PTTQGRLLLVVGAAGERDPRRRE---DIGRVAARLAD 385

Query: 402 SHVWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSL--VDGDVVVV- 449
              +    H      A+                     +     +++ L   +GD V++ 
Sbjct: 386 KAFFTEEDHRTEDLGAILEAMARAAAAEGGRFELVPDREEAI--LKAILEAQEGDTVLLA 443

Query: 450 -KS 451
            K 
Sbjct: 444 GKG 446


>gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
 gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
          Length = 501

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 171/465 (36%), Gaps = 52/465 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV------------ 75
             +++DSR +   + F A+KG   DG  FI +A+++GA +++   +              
Sbjct: 22  KQMTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQFAR 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V  +   L+ +  +  A   +K  +I ITG+ GKTTT ++L    + +
Sbjct: 82  YNLDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNH---------------IGVPLTLAR-MPVDVDFGIFELGMSHLGEIRF 177
               A +G+  N                I V   LAR +    DF   E+    L + R 
Sbjct: 142 GGHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQYR- 200

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               ++  +A+ T ++  HL     I    +AK  +F  L+ T    LN DD   +   +
Sbjct: 201 -VEALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQ-TKAQVLNADDQVAQNWLS 258

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + +      S++   +  K     + +++E +    + +      G     N+L
Sbjct: 259 MLPNAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSGAFNVTNIL 318

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L  +  L  D+   +   S      GR ++   A+      L+   Y   P +++ A+
Sbjct: 319 LALAGLLTLGYDLAKLVATASQLRSVTGRMQKV-SAITDKNRPLVLVDYAHTPDALQKAL 377

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410
                   H +G+   V G   +     +     +AE L+      V ++  +       
Sbjct: 378 QA---ARLHTKGKLFCVFGCGGDRDCGKRPLMATIAEELA----DGVIVTNDNPRTEDQH 430

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V  +     +  ++      +             D++++  K 
Sbjct: 431 KIVAEIMQGFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKG 475


>gi|260463536|ref|ZP_05811735.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030627|gb|EEW31904.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 434

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 153/358 (42%), Gaps = 17/358 (4%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           T I +TGS GK+T   +L   L++ + TYA     ++N+ +           +VD+ +FE
Sbjct: 31  TFIGVTGSSGKSTVTALLGHILAAHRPTYARVLANTFNSLVSTLYKRMTQAGEVDYVVFE 90

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            G S +  IR +  +++PH+AV+T +   H++ F  +E +A  K  +   L   G   LN
Sbjct: 91  AGASGIDTIRPMAEMLQPHVAVVTMVRLEHVARFRTLENVAVEKRAMVSALRPDGLAVLN 150

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD +   + A +       + +FG ++ AD+++   +    ++    +  +G  ++   
Sbjct: 151 ADDPYVADMAAGAGC----RVVTFGMAETADYRVTDIRAAYPDRLTFSIHWRGGLLQPET 206

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                H     +  +     L    D     ++ F P      R    + +G    I ++
Sbjct: 207 PFPAEHFWLPTVAAVATALELGVPPDKVAAQVATFQPV---VNRCAVLVTEGGPQFILDA 263

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
             A   S+  A+ ++++ +     R+  VLG + +    ++ +    A   +   +  V 
Sbjct: 264 AKAPWHSINLALDMMAKATSS---RKRIVLGQISDYAGSTKKY--AFAYQTARGIVDQVI 318

Query: 406 LSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +G +    + +        + E  T   +   I+ + V G++++VKSS+S    R+ 
Sbjct: 319 YTGDNAHRSRASQTDRDSGRFVELRTAKEVSDHIKRTAVPGELILVKSSSSLHLERIA 376


>gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
 gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
          Length = 483

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q +   +   +    + G++ DSR +    AFFA+ G   DG  +   A  +GA +VV
Sbjct: 3   LSQLLGEAATAGLGDLDIAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVV 62

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                      +S+P+  V DV  +L   A     R    + A+TG+ GK++  + L   
Sbjct: 63  APR-----AAEVSLPLVVVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQI 117

Query: 130 LSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFG---IFELGMSHLGEI 175
             ++ +  A +G+                  P+ L +   ++  G      +  S LG  
Sbjct: 118 WIALGREAASLGTIGLIDKSGAHYGALTTPGPVALHQTLDELCAGGVTHLAMEASSLGID 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFEL 234
           +     VR  +   T  +  HL +   +EE  +AK  +F+ L +TG T  ++ D +  E 
Sbjct: 178 QRRLDGVRLCVGAFTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAER 237

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           + A   A G+  ++  G    A  +L      +  + + ++  G++ +V     G     
Sbjct: 238 VAAVCAARGLA-LFDVGAKGRA-IELLSVAPSALATRLTLRHAGETYDVDLPLAGGFQIS 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L++ G+             AL+      G   R      +    +  + Y   P ++ 
Sbjct: 296 NALVSAGMAIASGEAPGRVFAALASLRGAPG---RLELIGQRDGAPVFVD-YAHKPDALD 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-------SHVWLS 407
             ++   +++   +GR + V G   +  +  +    ++A   +   +       S     
Sbjct: 352 KVLATARELA---KGRLVVVFGAGGDRDKGKRPLMGEIAARAADIVVVTDDNPRSEEPAM 408

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +        S  +H             S L DGD ++V  K 
Sbjct: 409 IRAAIVAAARAAGSAQIHEIGDRRAAIETAISWLRDGDALIVAGKG 454


>gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
 gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
          Length = 474

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 177/482 (36%), Gaps = 70/482 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   L             +  V G+S +S++I   +AFFAIK    +G+DFI  A
Sbjct: 1   MTP--TLKQL-----------FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADA 43

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +        + +  V  V+D+   L++       +   T+IA+TG+ GK+
Sbjct: 44  LEKGAALVITD-----DKKNTTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKS 98

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------------MPVDV 160
           +    +    S I +  A IG+    +                                +
Sbjct: 99  SVVSYIAQIYSLIGQKAASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGI 158

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
           D+  FE     L + R     ++ ++A  T+ +  HL      E    AK ++F + L K
Sbjct: 159 DYLAFEASSHGLDQQRL--GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAK 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN D    E +K     L    I       N + ++ K     +   +      K
Sbjct: 217 DGIAILNSD---IEEIKFIKDYLDKHKIKYLCVGANGNCKITKTNSSLKGQNINFIFDNK 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + +     IG   A N+L+    V   + D    I AL+     +GR +R          
Sbjct: 274 NYDFDTPIIGSFQASNLLIAGPSVYYTSFDFSKVINALTKVKAVKGRMERV-------NR 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T I   Y   P +++ A++ L  I     G+   + G         +     +A  ++  
Sbjct: 327 TNIFIDYAHTPDALEKALTELKNIKAK-GGKLSIIFGCGGNRDTTKRKLMGKIAASIA-- 383

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVH-YSETMD--GLFLFIQSSLVDGDVVVV-- 449
              +V ++          A++  +   I    Y E  D      +  ++L   D++++  
Sbjct: 384 --DNVIVTDDNPRHEDPKAIRQEIISGIVTTNYIEIADRKEAIKYGINNLKKDDILLIAG 441

Query: 450 KS 451
           K 
Sbjct: 442 KG 443


>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 490

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 171/478 (35%), Gaps = 52/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+       G   +  + G+   ++++ P + F   KG    G  F+  A+ +G
Sbjct: 1   MQLAELLKDWPCSVTGGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  +V    +   I    IP   V +    L+  +   AA      T+IAITG+ GKTT 
Sbjct: 61  AAAIVSEESISLPIIDKEIPFVWVPNTALFLSYASAKLAAFPAEALTVIAITGTNGKTTV 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV--------PLTLAR-------MPVDVDFGIFE- 166
              ++  L+++ K  A IG+    I           LT  +       +   V  G+   
Sbjct: 121 SHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQLTTLQAKELHPILKQCVQKGVTHV 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L  S +G  +           V   ++  HL +  G+E    AK  + +  +K   + L
Sbjct: 181 VLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVL 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD+F   +         K   SFG   + D  ++   +   ++ + +Q       V  
Sbjct: 238 NGDDNFCRSV----GIYDKKKSCSFGFDNHNDLHIQIVSESVGKTVLCLQTSASEHIVEI 293

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G +  QN + +L  V  L   ++  +  +      EGR ++    L    +      
Sbjct: 294 PFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKIENPLGIDVYV----D 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y     +++A +                V       G   ++    +  V S Y    ++
Sbjct: 350 YAHTAEALQAVLQTFDHSKTIY-----LVFSC---GGNRDKAKRFAMGAVASKY-ADVIY 400

Query: 406 LS-----GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+         + + +++      +  +  Y +    +   +  +   GD+V+V  K 
Sbjct: 401 LTTDNPRDEDPIVINESIIAGFTEQQYYEIYLDRKLAIHQALAKA-EKGDIVLVAGKG 457


>gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
 gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
          Length = 500

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 28/411 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L   I    +G      VNGI+  S  + P +AFF + G   DGH F   A+ +GA
Sbjct: 4   TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++VV   +  +  +  +    V D     A               ++ ITG+ GKTTT 
Sbjct: 63  KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGKTTTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGM 169
            ++        K    IG+    IG                  L     D    +  + +
Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVVAMEV 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S        T      +   + +   HL      E    AKA +F          +  DD
Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR-VICIDD 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + + L  +  ++   ++ + G   +A       +     + + + ++G      +  +G
Sbjct: 241 KWGKELLRRC-SVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N++   GI   L    +T ++AL       GR +R       G    +D  Y   
Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVD--YAHT 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P +++ A++ +  ++P   GR + V G     G+   S    + +     +
Sbjct: 358 PDALEKALASIMALTP---GRTVCVFGC---GGDRDASKRPIMGKAALAAD 402


>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
 gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
          Length = 516

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 185/505 (36%), Gaps = 68/505 (13%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++L+ I+G+      +  +  I  +S++++  + F AI+G   DGH +I  A ++G    
Sbjct: 16  EILE-IKGNL---DIEKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAKKQGCYAC 71

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEML 126
           +V          L +    V +   AL+K       +      II IT + GKTTT  ML
Sbjct: 72  IVE-----DFVDLDVAQIKVKNSRAALSKVSHNYYGKPSEDLDIIGITATNGKTTTSFML 126

Query: 127 TIALSSIKKTYACIGSYNNHI---GVPLTLAR-------------MPVDVDFGIFELGMS 170
                        IG+    I    +P  L                    D  I E+  +
Sbjct: 127 KKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSIFRERKADKVIMEVSSA 186

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L   R     V  +I   + ++  H+      E     K+++    ++     LN+D+ 
Sbjct: 187 ALELDR--AKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITEAKEHQIAVLNFDNP 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEV-----------QLQG 278
             + L +K+ A     ++SF    + + F ++     + +   +             L+ 
Sbjct: 245 EIKELASKTKA----KVFSFSLDDSLENFSMKNLDLSTGRGKFDFIINRDIETKSGILKK 300

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V  +  G+    N ++ + I  +   D+ T  +AL +F   E   +R+     + F
Sbjct: 301 GEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVE---RRFEIIFEKDF 357

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC-EMGELSQSFHID------ 391
             +  + + AN  ++   +  L ++  +      A+ G+   E+ E +    I+      
Sbjct: 358 KII--DDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKIIEWNNKLK 415

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           L+E+ +  +   V          +D         +I VH  +T+      +       DV
Sbjct: 416 LSEIYATLSRDTVTWKDEVSDEERDIFLKIMKENNIKVHLFDTLKEAVETVIDIAQKDDV 475

Query: 447 VVVKSSNSCGFYRL----INLLLEE 467
           V+   +   G  +     +N +LE+
Sbjct: 476 VMF--AGCQGMDKAGRIGLNYILEK 498


>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
          Length = 471

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 167/457 (36%), Gaps = 51/457 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F AI G   DG  +I  A+ +G   +V   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ +T A +G+  
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  VD       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +      +N DD       ++   L      S 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLSQ---LPQAVAVSM 237

Query: 251 GKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                A          + +     + +         ++    +G     N+L+ L  +  
Sbjct: 238 EGHLPAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLS 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +   + A     P  GR + +    N      +   Y   P +++ A   L+    
Sbjct: 298 LGYPLAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAARL 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
           H +G+   V G   +  +  +     +AE L+      V ++  +  +      + D L 
Sbjct: 351 HCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQAIVADILS 406

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             +   ++  + G    + S++    + DVV++  K 
Sbjct: 407 GLLDAGHALAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443


>gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 495

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 151/459 (32%), Gaps = 35/459 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++A  +AF AI G    G  F+  A   GA  V+        
Sbjct: 13  DVALPHDVQVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPAPDG 72

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  + +    V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 73  LP-VPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
           V   +AV T +   HL     + +  +AKA++F   GL+      +N DD F   L A  
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA---AVVNLDDGFGRTLFASL 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +      S     +A    +  +         + ++G+   V    +G     N+L  
Sbjct: 249 DPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDNLLAV 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  L          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD-- 416
           L     H + R I V G   E     +     +AE+   +  ++     G    A+    
Sbjct: 366 LRS---HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADI 422

Query: 417 --ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                R                  +     D+V++  K 
Sbjct: 423 LRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461


>gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 469

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 157/427 (36%), Gaps = 50/427 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T +      +       IPV     +L  + +             IAI G+
Sbjct: 63  QGADVVVTSTAVKKDNPEVTAAVAQQIPVIPRALMLAEMMRF---------KDGIAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L++              IG  LT A     +  G + +  +   +  
Sbjct: 114 HGKTTTTSLTASILAAAGLDP------TFVIGGKLTAAGTNARLGKGSYIVAEADESDAS 167

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           FL   + P +AV+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 168 FL--YLTPLMAVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-----LQGKSMEVVHHGIGY 290
             +          ++G   +AD      +    Q    V       + ++ +VV +  G 
Sbjct: 226 LPRISKPHA----TYGLDDSADIYATDVESIGAQMKFTVHARLKGHEPRTFDVVLNLPGR 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNAN 349
           H   N L  +G+      D +   + L  F     R + Y    L QG   L+ + Y  +
Sbjct: 282 HNVLNALAAIGVALECGVDEEAVRRGLEGFAGVGRRFQSYGEIELPQGGKALVVDDYGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  M A +S      P     +  VL         ++    D ++VL+  ++   + V+ 
Sbjct: 342 PVEMAATLSAARGAYPD----KRLVLAFQPHRYTRTRDLFDDFSKVLNTVDVLVLTDVYA 397

Query: 407 SGFHVLAL-KDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +G   L     AL R++  +      Y   ++ L   +   L DGDV++   + S    +
Sbjct: 398 AGEDPLPQDSRALARNVRAYGKVDPLYCADVNELPAMLLDVLRDGDVLLNMGAGSIN--K 455

Query: 460 LINLLLE 466
           +   L+E
Sbjct: 456 VPAALVE 462


>gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 440

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 170/467 (36%), Gaps = 43/467 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + + G  +G       + ++  S    P   F A+ G    G  F   A+Q G
Sbjct: 1   MLASQLAKIVNGQLVGD--DFEFDHVAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQNG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++ + +  AS          V D   A+ KL           I+ + G+ GKTT KE
Sbjct: 59  ASGLLTDVEPEASN------YVLVTDAFEAVKKLGETLVRSYSGKIVVVLGASGKTTLKE 112

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHL 181
           +      +  + ++  G+ N  I +   L        +  + I E G+    +      +
Sbjct: 113 LARSL--APVRVWSSYGNRNTIISLVTDLFNERESALNAPYWILEFGIHDKKDADDFLQV 170

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P+ A+ T++   HL     ++       ++     K   +     D +          
Sbjct: 171 FNPYAALFTSLGAEHLEFLENVDVAVRTNLKVGMAATKRFALV---SDEY---------- 217

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             ++    FG  + + +       C   +  ++   G+  +VV    G   AQ++     
Sbjct: 218 -SVEDAILFGSPQTSAWFDISSFTCDGCTLGKLMCHGEEKDVVLPFWGKRSAQSVAGAAA 276

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   +D               G+  +     G   +  ++YNANP SMK  + V+S
Sbjct: 277 FWVSEGFGLDEL--PWENLDTINIWGR--QQLTRWGDLLIFFDAYNANPESMKEFLEVVS 332

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
           ++     G++  V+GDM E+GE S  +H  LA  L    I ++ L G  V      L + 
Sbjct: 333 EVP---YGKKGLVIGDMLELGEYSHYWHRKLAHWLKKSGIQYLILVGNEVKYTLRELEKV 389

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVV--VKSSNSCGFYRLIN 462
              +++V +   ++    F    ++  D+ +  +K S      +LI 
Sbjct: 390 DGHAMYVEWYRDVETARSF---FMIPEDIELLGLKGSRRIALEKLIQ 433


>gi|170728851|ref|YP_001762877.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella woodyi ATCC
           51908]
 gi|229620422|sp|B1KKX6|MURC_SHEWM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169814198|gb|ACA88782.1| UDP-N-acetylmuramate--alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 489

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 162/414 (39%), Gaps = 48/414 (11%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T + A    L       IPV    ++L  L +             +A+ G+ 
Sbjct: 80  GADVVVVSTAIHADNPELLEAQALRIPVVRRAEMLAELMRYR---------HGVAVAGTH 130

Query: 118 GKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++           T+   G  N+      T AR+  +  + I E   S    +
Sbjct: 131 GKTTTTSLIASVYGQAERDPTFVIGGLLNS----AGTNARL-GNSRYLIAEADESDASFL 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                 ++P ++VIT I   H+  +    E + S   +    L   G   +  DD     
Sbjct: 186 H-----LQPMVSVITNIEADHMDTYEGDFERLKSTFIDFLHNLPFYGIAVMCIDDPVVRE 240

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMA 293
           L         + I ++G S++AD Q   + Q   +S   ++  G + +EV+ +  G H  
Sbjct: 241 LLPSV----GRKIVTYGFSEDADVQALNFVQDGYRSRFTLRRTGVEDVEVMVNLPGEHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + + S    + +  I+AL+ F     R ++  C        ++ + Y  +P+ +
Sbjct: 297 LNALAAIAVASEDEIEDEAIIQALADFEGIGRRFEQLGCFDTDRGEVVLVDDYGHHPSEV 356

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
            A I       P    R + +          ++  + D  EVLS  +   +  V+ +G  
Sbjct: 357 AATIKAAKLGWPEK--RLVMIY--QPHRYSRTRDLYEDFVEVLSQVDCLLLLDVYSAGEA 412

Query: 411 VLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   D  AL RSI +       +    + L   +   L +GD+++ + + + G
Sbjct: 413 AIPGADSRALCRSIRLRGQLDPIFVADQEQLLTLLPDVLQEGDLLLTQGAGNIG 466


>gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 489

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 163/463 (35%), Gaps = 44/463 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR + P  AF A+ G   DG  FI+ A             
Sbjct: 17  LEAQLEGPAGLLDISGLSSDSRKVMPGNAFVAVAGTKADGAGFIVDA-----AGRGAAIA 71

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           + +     SIPVF V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 72  IASQAVDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAVTGTAGKTSVASFTRQIWAYA 131

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
               A IG+                  P++L  +  +     V     E     L + R 
Sbjct: 132 GHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAGEGVTHAAMEASSHGLDQCRL 191

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLK 236
               VR   A  T +   H+     +E   +AK  +F+ L   G+   +  DD +     
Sbjct: 192 --DGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGSPAVIFADDPWSAQ-A 248

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K+       I + G+  +    L++ +    +   E+ + G+  EV     G     N 
Sbjct: 249 IKAATDAGHDIRTVGRKGD-YLSLKRVEHFRHKQMAEIHIGGEIFEVDIPLAGDFQVANA 307

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+          A  A++      G   R     +     L    Y   P +++  
Sbjct: 308 LVAAGLAMSTGV---EAKIAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDALE-- 362

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +VL  + P   GR I V G     G+  +     + E+        V ++  +  + + 
Sbjct: 363 -NVLGSVRPFTTGRVIVVFGC---GGDRDRGKRPIMGEIACRL-ADVVIVTDDNPRSEEP 417

Query: 417 ALPRSIHVHYSETMDGLFL---FIQSS---LVDGDVVVV--KS 451
           A  R+  +  +     +      I+ +   L  GD ++V  K 
Sbjct: 418 ASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKG 460


>gi|316984933|gb|EFV63889.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 506

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 156/429 (36%), Gaps = 55/429 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV     +L  L +             IAI G+
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG---------IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +    L +     T+   G  N       T AR+    ++ + E   S    
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAEADESDASF 206

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +        P ++V+T I   H+  +   +E++  A  +    +   G  FL  D     
Sbjct: 207 LHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVR 261

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
            +  K      K   ++G    AD      +    Q    V +Q K     S EVV +  
Sbjct: 262 AILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMP 317

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYN 347
           G H   N L  +G+   + A V+   K L  F     R ++Y    L  G   L+ + Y 
Sbjct: 318 GRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYG 377

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHV 404
            +P  M A        +      +  VL         ++    D  +VL+  +    + V
Sbjct: 378 HHPVEMAAT----LAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEV 433

Query: 405 WLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S  
Sbjct: 434 YAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSIN 493

Query: 457 FYRLINLLL 465
             R+   LL
Sbjct: 494 --RVPAALL 500


>gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
 gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 489

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/414 (22%), Positives = 160/414 (38%), Gaps = 48/414 (11%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T + A    L       IPV    ++L  L +             +A+ G+ 
Sbjct: 80  GADVVVVSTAISADNPELLEAQALRIPVVQRAEMLAELMRYR---------HGVAVAGTH 130

Query: 118 GKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++           T+   G  N+      T AR+     + I E   S    +
Sbjct: 131 GKTTTTSLIASVYGQAERDPTFVIGGLLNS----AGTNARL-GHSRYLIAEADESDASFL 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                 ++P ++V+T I   H+  +    E++ S   +    L   G   +  DD     
Sbjct: 186 H-----LQPMVSVVTNIEADHMDTYEGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVRE 240

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMA 293
           L  K      + I ++G S++AD Q   + Q +  S   ++  G + MEVV +  G H  
Sbjct: 241 LLPKV----GRKIVTYGFSEDADVQALNFVQEAYLSRFTLRRAGVEDMEVVVNLPGQHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + + +    D    I+AL+ F     R ++  C        ++ + Y  +P+ +
Sbjct: 297 LNALAAIAVATEDEIDDAAIIQALADFQGIGRRFEQLGCFDTNKGEMVLVDDYGHHPSEV 356

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
            A I       P    R + V          ++  + D  EVLS  +   +  V+ +G  
Sbjct: 357 AATIKAAKAGWPEK--RLVMVY--QPHRYSRTRDLYDDFVEVLSQVDCLLLLDVYAAGES 412

Query: 411 VLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   D  AL RSI         +    + L   +   L  GD+V+ + + + G
Sbjct: 413 PVPGADSRALCRSIRQRGQLDPIFVSDSEQLLSLLPDVLQAGDLVLTQGAGNIG 466


>gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 495

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/402 (20%), Positives = 138/402 (34%), Gaps = 28/402 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V G+ +DSR +AP +AF AI G    G  F+  A   GAG V+       +
Sbjct: 13  DVALPHDVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVL-FEPPAPN 71

Query: 78  IGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              +      V  +   L         R      ++ +TG+ GKT+T ++L  AL+ +  
Sbjct: 72  GMPVPADAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +G+    +                   L     D       + +S     +     
Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
           V   +AV T +   HL     + +  +AKA++F   GL+      +N DD+F   L A  
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA---AVVNLDDAFGRTLFASL 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    S     +A    +  +         + +QG+   V    +G     N+L  
Sbjct: 249 DPALRAIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G +  L          L    P  GR  R           L+   Y   P +++ A+S 
Sbjct: 309 AGALWALEIAPAQIATVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALSS 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           L     H + R I V G   E     +     +AE+ +   I
Sbjct: 366 LRS---HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAI 404


>gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
 gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
          Length = 499

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/486 (16%), Positives = 163/486 (33%), Gaps = 63/486 (12%)

Query: 4   LWTFH-DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFIL 58
           + +   +++ AI              G  +DSR I   + F A+    +        F  
Sbjct: 1   MMSVSFEMISAIDAAI--EWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKT--RIFAE 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAIT 114
            A+ +GA  ++    +      +        DV   + +       +++      IIA+T
Sbjct: 57  TALAQGALGIISEQPLGLEREWVC------ADVRHRMGQWQKNYLQKTEPVNAARIIAVT 110

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTT   ++   L+  ++  A +G+  N I   L  +                    
Sbjct: 111 GTNGKTTISRLVAELLTLQQQRCAVMGTTGNGILPHLNPSTHTTLDALQLQSALHQYVKE 170

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F   E     L + R   +     IAV + ++  HL     +   A AK+ +F   +
Sbjct: 171 GARFASLEASSHGLEQGRL--NGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFAF-K 227

Query: 219 KTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 +N DD++ EL+KA  +       I ++  +++AD+ +++ +     +   +   
Sbjct: 228 SLKVAVINQDDAYAELMKAVAAQNPAQPQILTYSLTQSADYSVKELQYSLSGARFILVGP 287

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                V    +G+   +N++  L         ++  +K +       GR +  R      
Sbjct: 288 KGEYLVESPLLGHFNVENLIAALIAAEQAGFALEELVKTVPQLIGAPGRMQVIR-----D 342

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L    Y   P ++   +  L +   H + +  AV G   +     +          +
Sbjct: 343 QDRLFVVDYAHTPDALNQVLKTLRR---HVQQQLWAVFGCGGDRDRGKRPLMTQ----AA 395

Query: 398 LYNISHVWLSG-----FHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVV 447
           L   + V L+       +   +   +   I   +              ++      GD+V
Sbjct: 396 LNGANPVILTSDNPRTENPKQIFADMKTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIV 455

Query: 448 VV--KS 451
           V+  K 
Sbjct: 456 VIAGKG 461


>gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
 gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
          Length = 472

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 178/480 (37%), Gaps = 67/480 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M     F ++L+ +     G++P+  + G S DSR I    AF  +KG   DG  +I  A
Sbjct: 1   MKSSNDFLEMLEELNPRLSGVLPE-LIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVG 118
           + KGA L++           ++IP   +DD+    AL      A +     IIA+TG+ G
Sbjct: 60  LAKGARLLLCE-----EFLDVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDF 162
           K++T  ++   L+ + K+ A IG+    +G  +  + +                    ++
Sbjct: 115 KSSTAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEY 174

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E     L + R   + +     + T ++  HL     +E   SAK  +F+    +  
Sbjct: 175 VVLEASSHGLDQQRL--YGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDD-YDSKI 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD++ + L+     +       F +  ++D Q+ +     E +   +        
Sbjct: 232 KIVNSDDAYGKRLRDSQTKV-------FSQDPDSDCQVLQNSVKLEGTECLLP------- 277

Query: 283 VVHHGIGYHMAQNMLMTLGIVS-ILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +G +   N    + +V  IL    V     A+  F    GR + ++   N G   
Sbjct: 278 ---QLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFK--KNNGAQV 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D ++       +A   V+ ++  +   +   V G     G+   +    + E   L  
Sbjct: 333 IVDFAHAQ-----EALEKVICELRKNCREKLSIVFGC---GGDRDPARRYGMGEASDL-- 382

Query: 401 ISHVWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V L+  +  +      + D L  +          +         L   D +++  K 
Sbjct: 383 ADEVILTNDNPRSEDPQQIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKG 442


>gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
 gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
          Length = 499

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 153/466 (32%), Gaps = 61/466 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           Q   +G S+DSR +   + F A+    +        F   A+  GA  ++  T++  +  
Sbjct: 19  QQPFHGFSLDSRKVQSGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGVANE 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135
            +        DV   + +                I+A+TG+ GKTT   ++   +SS ++
Sbjct: 77  WVC------PDVRQRMGEWQERYLQHIDPVTPARIVAVTGTNGKTTISRLVAELISSQQQ 130

Query: 136 TYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLT 179
             A +G+  N I   LT +                       F   E     L + R   
Sbjct: 131 RCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNG 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAK 238
             +   IAV + ++  HL     +E  A AKA +F          +N DD    L+  A 
Sbjct: 191 CAIE--IAVYSNLSRDHLDYHGTLEAYAEAKALLFRF-NSLKVAVINLDDEHAALMINAA 247

Query: 239 SHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   I ++  ++N AD+ +         +   +     S  V    +G+   +N++
Sbjct: 248 KQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGHFNVENLI 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L        D+D  +  +       GR +  R         L    Y   P ++   I
Sbjct: 308 AALIAAEQAGFDLDALVAFVPKLIGAPGRMQVIR-----DGERLFVVDYAHTPDAL---I 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410
            VL  +  H   +  AV G   +     +          +L   + + L+  +       
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPIILTSDNPRTEDPE 415

Query: 411 --VLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +K  +      +           F+      GD+VV+  K 
Sbjct: 416 QIFADMKQGINFSGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 169/480 (35%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  ++ DSR +     F  I G  +DGH ++    +KG
Sbjct: 1   MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D+ A  G   + V   ++   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAIIAERDIEAPKG---VTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             ++   L  +      IG+    I                +    A+M  +    +  +
Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    KA +F+  +       
Sbjct: 177 EVSSQGLMLHRTAEIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQCKLG---IA 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GK-SME 282
           N DD ++E +   +       + +FG S  AD +       S+  ++ V     GK   +
Sbjct: 234 NIDDPYYEDIFRGATC----KVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFD 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +        +   +AL   H K     R         FTL+
Sbjct: 290 VEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKG----RIEMIKVSDDFTLM 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  S+++ ++ L +  P    R + V G     G  S+    ++ EV       
Sbjct: 346 ID-YAHNAMSLESLLTTLKEYEPK---RLVCVFGC---GGNRSKDRRYEMGEVSGRLADL 398

Query: 403 HVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 399 TIITSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458


>gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
 gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
          Length = 488

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 167/480 (34%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  ++ DSR +     F  I G  +DGH ++    +KG
Sbjct: 1   MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D+ A  G   + V   ++   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAIIAERDIEAPKG---VTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             ++   L  +      IG+    I                +    A+M  +    +  +
Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    KA +F+  +       
Sbjct: 177 EVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQCKLG---IA 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GK-SME 282
           N DD ++    A         + +FG S  AD +       S+  ++ V     GK   +
Sbjct: 234 NIDDPYY----ADIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFD 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +        +   +AL   H K     R         FTL+
Sbjct: 290 VEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKG----RIEMIKVSDDFTLM 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  S+++ ++ L +  P    R + V G     G  S+    ++ EV       
Sbjct: 346 ID-YAHNAMSLESLLTTLKEYEPK---RLVCVFGC---GGNRSKDRRYEMGEVSGRLADL 398

Query: 403 HVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 399 TIITSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458


>gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
 gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
          Length = 488

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 157/430 (36%), Gaps = 42/430 (9%)

Query: 44  FAIKGPHYD---GHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
             + G       G D +  A V   +  +      + +   L IP+    ++L  L +  
Sbjct: 61  LCLLGAKIHIGHGADNVQQADVVVVSTAINPQNPEIIAAKELRIPIVRRAEMLAELMRYR 120

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      +AI G+ GKTTT  ++        +           +    T AR+   
Sbjct: 121 ---------HGVAIAGTHGKTTTTSLIASLYGQAGRDP--TFVIGGLLNSAGTNARLGTS 169

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
             + I E   S    +      ++P ++V+T I   H+  +    E++ S   +    L 
Sbjct: 170 -RYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLP 223

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  DD     +  +      + I ++G   +AD Q   + Q   Q    V+ +G
Sbjct: 224 FYGVAVVCIDDPVVREIMPRIS----RHIVTYGFRDDADVQALNFSQQGHQCRFTVRRKG 279

Query: 279 KS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           K  ++++ +  G H   N L  + + +    D    I+AL+ F     R +         
Sbjct: 280 KEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFATPK 339

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++ + Y  +P+ + A I       P     +  V+         ++  + D  EVLS
Sbjct: 340 GEVMLVDDYGHHPSEVAATIKAARAGWPE----KRLVMAYQPHRYTRTRDLYEDFIEVLS 395

Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   +  V+ +G   +   D  AL RSI +       +  + + L   +   L +GD+
Sbjct: 396 QVDCLLLLDVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPEQLAEVLPDVLQEGDL 455

Query: 447 VVVKSSNSCG 456
           ++ + + + G
Sbjct: 456 LLTQGAGNIG 465


>gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas
           atlantica T6c]
 gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 530

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/469 (18%), Positives = 164/469 (34%), Gaps = 51/469 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
              +  + +DSR +A   AF A+KG   DG DFI  A+  GA +++   +  A  G  S 
Sbjct: 43  DITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAEHGHTSM 102

Query: 83  -----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                I  F       +    A          +I +TG+ GKT+T ++ +   + + K  
Sbjct: 103 REQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIGVTGTNGKTSTVQLTSQLAALLNKRA 162

Query: 138 ACIGSYNNH---------------------IGVPLTLARMPVDVDFGI-FELGMSHLGEI 175
           A IG+  +                      I +   +A+   D    +  E+    L + 
Sbjct: 163 ASIGTLGSGVIDQSGACASHNETANTTPDAISMHKLMAQFAQDQVKQVALEVSSHALVQQ 222

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R     ++  +AV+T +   HL     ++  A AK E+ +   +     LN ++   +  
Sbjct: 223 R--VAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRELLKQ-PELRFAVLNGNEIESKHW 279

Query: 236 KAKSHALGIKTIYSFGKSK----NADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            A+  +     IY          +A+ Q   +     ++    ++       ++    +G
Sbjct: 280 LAQLPSAVTPVIYGIADESLMLTDAEHQCLAKDVVYSNQGCRFKLVSSWGECDIQLSLLG 339

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  +     L   ++   K   +  P  GR +R+           +   Y   
Sbjct: 340 RFNIFNALAAIASQLCLGESLNDIAKHAHLLVPVTGRMERF----GGDNSPTVVVDYAHT 395

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSG 408
           P ++K A+  L Q   H +GR   + G   +     +S   ++AE       I++     
Sbjct: 396 PDALKQALVALRQ---HSQGRLSVIFGCGGDRDTGKRSLMGEVAETYADDMTITNDNSRS 452

Query: 409 FHVLALK-DALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               A+  D L   +H   V               +    D+++V  K 
Sbjct: 453 EDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDIILVAGKG 501


>gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 483

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 162/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81
            G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +        
Sbjct: 17  DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +IP   +  +   L ++A            +  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  AIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136

Query: 140 IGSYNN-----------HIGVPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                   L L R+        +     E+    L + R     + 
Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHR--VDSLE 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ T +   HL     ++   +AK+ +FE  E      +N DD F +L+        
Sbjct: 195 FSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFERAELQ-WAIINQDDDFQDLMSNVLKTHV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   ++G  +N D +  +W      + +EV+       +    +G     N L     +
Sbjct: 254 KK--VTYGMHQNCDVKALQWNMDITGTEIEVKSPWGHQLLKIKALGKFNIYNSLAVYSSL 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +  ++ ++      GR +     + Q  + L+D  Y   P +++  +  L QI
Sbjct: 312 LASGHNPEKVVQVMAELKAAPGRME----IVAQSPYVLVD--YAHTPDALENVLITLKQI 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVL--ALK 415
               +GR   V G     G+  ++    + +  S+Y  + V  S         ++   + 
Sbjct: 366 K---KGRLWVVFGC---GGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIA 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +P S  V      +    +        D++++  K 
Sbjct: 420 CGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457


>gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 160/478 (33%), Gaps = 48/478 (10%)

Query: 3   PLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           P+ +   L Q + GH            V G+S DSR I P + F AI G H DG  FI  
Sbjct: 7   PMTSLS-LGQLLDGHARILSAGAGDEPVFGLSADSRRINPGDLFVAIPGTHADGSRFIAD 65

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV +GA  V++       +    + +    DV  +L+  A     R  ATI A+TG+ GK
Sbjct: 66  AVARGASAVLMEPAAPRPVLPPHVALAFSLDVRHSLSLAAARFYPRQPATIAAVTGTAGK 125

Query: 120 TTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD-VDFG 163
           T+    L      +    A +G+                 + + +  TL R+  + V   
Sbjct: 126 TSVAFFLRQIWERLGHKAAYLGTIGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVTHM 185

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGT 222
             E     L + R     V       T +   HL     I+    AK  +F   +    T
Sbjct: 186 ALEASSHGLDQKRL--DGVHFTAGGFTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDAT 243

Query: 223 IFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   F     A +   G+K +    G++   D     +      +  +V     S 
Sbjct: 244 AVAVTGAPFAANALAWAETRGLKLLPIGEGQATGLDI----FGTTGSGTGQKVMFADGSH 299

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +V   +G     N L+  G+     A+   A++AL+      GR +R            
Sbjct: 300 AIV-PLVGRFQLDNALLAAGLAIACGAERPAALEALAYLTGVPGRLERI----GDDPRRP 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P ++   +  L    P   GR + V G   +  +  +     +A        
Sbjct: 355 VFVDYAHKPEALATVLDTLRAAVP---GRLMVVFGCGGDRDKGKRPLMGAIA----ASKA 407

Query: 402 SHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V ++  +  +        + L  +                 + L  GD ++V  K 
Sbjct: 408 DVVIVTDDNPRSEDPAAIRAEILEGAHGAREIGDRAEAIKAAVALLQPGDALIVAGKG 465


>gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
 gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 159/482 (32%), Gaps = 47/482 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T   LL      S        V  + +DSR +     F AIKG   DG  FI  A
Sbjct: 1   MSKELTLATLLAPWLDISTDESANVVVERLELDSRKVTQGTTFVAIKGHAVDGRRFINSA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           ++ GA  ++     +   G +     + +  +D +   L+ LA      S   +I +TG+
Sbjct: 61  IELGANAIIAEACELHPHGKVERSSGVSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DV 160
            GKTT  +++   L  I    A +G+  N     L  A                      
Sbjct: 121 NGKTTITQIMAQWLDLIGHKAAVMGTTGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGA 180

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            +   E+    L + R     +   + V + ++  HL     +EE A AK  +F+     
Sbjct: 181 QYTALEVSSHGLVQGR--VKTLPFEVGVFSNLSRDHLDYHGTMEEYAEAKFSLFDQHT-C 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  +N DD        +  +  I    +      A               + +      
Sbjct: 238 KTAVINIDDQVGASWVKRLDS-AIAVSLNPTDHPRA-VWAESVSYSEAGISLVIDGLFGR 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E     IG   A N+L+ L  +  L  D    +   S   P  GR + +  +       
Sbjct: 296 GEFTIALIGEFNASNVLLALTALLALGVDKQQLLDTASSLKPVLGRMELFTASDKAKVVV 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y   P +++ A+  L     H  G+   + G   +     +     + E L+   
Sbjct: 356 ----DYAHTPDALEKALKALR---VHCHGKLWGIFGCGGDRDTGKRPMMAAIGEELA--- 405

Query: 401 ISHVWLSG-----FHVLALKDALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVVV-- 449
              V L+          A+ + + + ++      ++        +  +   + D++++  
Sbjct: 406 -DKVILTDDNPRSESPAAIVEDMLKGMNEPELAIVEHNRFDALKYALAHSGEQDIILLAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 537

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/485 (20%), Positives = 172/485 (35%), Gaps = 57/485 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   +        V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 17  LAELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAV 76

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  VD+  G +  LA        +    I ITG+ GKTTT  
Sbjct: 77  AVLTDPAGAERAAATGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTTAY 136

Query: 125 MLTIALSSIKKT----YACIGSYNNHIGVPLTLARMPV----------------DVDFGI 164
           ++   L +  K        IG+    IG     +                    DV   +
Sbjct: 137 LIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHSVV 196

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R         +AV   ++P H+   SG+E+   AKA++F    ++    
Sbjct: 197 MEVSSHALVLGR--VDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTK-ARSRAGV 253

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME-VQLQGKSM 281
           +NYDD +   L  +S       + +F      +A ++    +     S    V   G+S+
Sbjct: 254 INYDDEYGRRLIEQSEV----PVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESV 309

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L  +  +++   D  TA   ++      GR +R       G   L
Sbjct: 310 RAAAPLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDV----GQPYL 365

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y     ++++ +  L +++   +G+  AVLG     G+  +     +   ++ Y+ 
Sbjct: 366 AVVDYAHKTDAVESVLRALRKVT---DGKLHAVLGC---GGDRDRLKRGPMGAAVARYSD 419

Query: 402 SHVWLSG-----------FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
           + V  S              +LA    +P      V   E          +    GD V+
Sbjct: 420 TAVLTSDNPRSEDPLAILAAMLAGAAEVPAHERGDVLVEEDRANAIAAAVARAEPGDTVI 479

Query: 449 V--KS 451
           V  K 
Sbjct: 480 VAGKG 484


>gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 494

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 166/478 (34%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L   I+   +       +  I+ DSR+ + +  F A KG   D H F  + + +G
Sbjct: 1   MNANELFNKIRVKQVIGTLDIDITDITTDSRTASGESIFVASKGYTVDSHRFCQNVIDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             ++VVN           +    V D L   ++    +      + T   +TG+ GKT+ 
Sbjct: 61  TKIIVVNRKQEVKGE---VTQVIVPDTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELG 168
             M+ +    + K  A +G+    I           P T+      +  VD       + 
Sbjct: 118 ATMIHLIYRGLDKNSAYLGTNGFQINEEKTKGANTTPETVLLTKKIKQAVDSKAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G        V   +AV + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLALGRLRGVEFDVAVFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F + L+  +       I ++G    A F  +  K+  + +  +      +  V 
Sbjct: 238 LNNDDDFSKYLETVTPY----EILTYGIDNEAQFMAQNIKESLQGAQFDFATPFGTYHVS 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  +  V     D    ++ +    P EG   R           LI +
Sbjct: 294 SPYVGKFNISNLMAAMIAVWSKGIDFKDIVEVVKSLEPVEG---RLEVLDPSLPIDLIID 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y      M   I     + P  + + I ++G M   GE   +   ++  V       +V
Sbjct: 351 -YAHTADGMNKLIDA---VQPFVKQKLIFLVG-MA--GERDLTKTPEMGAVA--CRADYV 401

Query: 405 WLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            L      + ++ + +  +G+   I      GD VV+  K 
Sbjct: 402 IFTPDNPADDDPKMLTAELAKGATHNNYIEFEDRAEGIKHAI-EVANPGDTVVLASKG 458


>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 513

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 169/476 (35%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+       G   +  + G+   ++++ P + F   KG    G  F+  A+ +GA 
Sbjct: 27  LAELLKDWPCSVTGGSIRTEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVKEALARGAA 86

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            +V    +   I    IP   V +    L+  +   AA      ++IAITG+ GKTT   
Sbjct: 87  AIVSEESISLPIIDKEIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSH 146

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------GMSH--- 171
            ++  L+++ K  A IG+   ++                  EL          G+SH   
Sbjct: 147 FVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEELTTLQAKELHPILKQCVRKGVSHVVL 206

Query: 172 ----LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +G  +           V   ++  HL +  G+E    AK  + +  +K   + LN 
Sbjct: 207 EASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVLNG 263

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD+F   +         K   SFG   + D  ++   +   ++ + +Q       +    
Sbjct: 264 DDNFCRSV----GIYDKKKSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIIEIPF 319

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +  QN +  L  V  L   +D  ++ +      EG   R     N     +  + Y 
Sbjct: 320 VGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEG---RLEKIDNPVGIDVYVD-YA 375

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               +++A +    +           V       G   ++    +  V S Y    ++L+
Sbjct: 376 HTAEALQAVLQTFDRSKTIY-----LVFSC---GGNRDKAKRFAMGAVASKY-ADVIYLT 426

Query: 408 -----GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + + +++      +  +  Y +    +   +  +   GD+V+V  K 
Sbjct: 427 TDNPRDEDPIIINESIIAGFTEQQYYEIYLDRKVAIHQALAKA-KKGDIVLVAGKG 481


>gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
 gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
          Length = 487

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 163/454 (35%), Gaps = 43/454 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  A+ +GA  V    +  AS+ + S  +
Sbjct: 17  LIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAIARGAAAVAFEAEGAASMHADSAVL 76

Query: 86  FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V  + G L+ +             ++ +TG+ GKT+  ++L  AL  + +    +G+ 
Sbjct: 77  VPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKTSVSQLLAQALDLLGQPCGIVGTL 136

Query: 144 NNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIAVI 189
            N     L   +       G+                + +S  G  +     +   +AV 
Sbjct: 137 GNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEFDVAVF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +E   +AKA++F          +N DD+F   L A++H      +  
Sbjct: 197 TNLSRDHLDYHGSMEAYGAAKAKLFAW-PNLRCRVINLDDAFGRELAAQTHES---RLIG 252

Query: 250 FGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +     +A     +           +        +  + +G     N+L  +G +  L  
Sbjct: 253 YSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLLAVVGALLGLDY 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +K L       GR +R       G   L+   Y   P +++  +     + PH E
Sbjct: 313 ALDEILKVLPQLQGPAGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEA---MRPHVE 365

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419
           GR + + G   +     +     +AE L+      VW++  +            ++    
Sbjct: 366 GRLVCLFGCGGDRDRGKRPLMAAVAERLA----DVVWVTDDNPRTEEPAQIVADIRAGFA 421

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               V +          + +     DV+V+  K 
Sbjct: 422 APERVQFIHGRGDAIARLVAQAEAADVLVLAGKG 455


>gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 528

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/508 (19%), Positives = 177/508 (34%), Gaps = 101/508 (19%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ + A LV+ +      I     
Sbjct: 11  QHNVKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKKNIVIDK--- 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V+DV  AL +       +    + A+TG+ GK++    +    S + K  A IG+ 
Sbjct: 68  -VIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTYSLLGKKTASIGTI 126

Query: 144 NNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVR 183
              I     L     +                    +++  FE     L + R     ++
Sbjct: 127 GGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSHGLDQARL--GEIK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF----------------------------- 214
            +IA  T+ +  HL      E    AK ++F                             
Sbjct: 185 VNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTERRTAAYTSDRA 244

Query: 215 ---------------------EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
                                + L  +G   LN D    E +K   H   IK I + G  
Sbjct: 245 DSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNHNIKFI-TVG-- 301

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           K  D ++ +     +   +      +        IG   A N+L+    V     D +  
Sbjct: 302 KKGDLEITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVHYTGFDFNKI 361

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I+ L+   P +GR +R          T I   Y+  P +++ A++ L  I    + +   
Sbjct: 362 IEILTQVKPVKGRMERI-------DNTNIFVDYSHTPDALEKALTELKNIK-LRDSKLSV 413

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK------DALPRSIHVHYS 427
           V G      +  +S    +A  L+      + ++  +           + +       Y+
Sbjct: 414 VFGCGGNRDKTKRSIMGQIAAKLA----DTIIITDDNPRNENPKLIRTEIISGIDKADYT 469

Query: 428 E--TMDGLFLFIQSSLVDGDVVVV--KS 451
           E    +    +  ++L   D++++  K 
Sbjct: 470 EIANREEAIKYGINNLKQDDILLIAGKG 497


>gi|313667818|ref|YP_004048102.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ST-640]
 gi|313005280|emb|CBN86713.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica 020-06]
          Length = 469

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/438 (22%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKS 280
             D      +  K      K   ++G    AD      +    Q    V +Q      +S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQES 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    R+   +LE
Sbjct: 449 NMGAGSIN--RVPAAMLE 464


>gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
 gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
          Length = 464

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 151/415 (36%), Gaps = 45/415 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +        +IP+    D+L  L           +   I + G+ GKTTT  M
Sbjct: 71  SAIPPDNEEYVYAKERNIPILHRSDLLADL---------TKEKKSIIVGGAHGKTTTTSM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + + L + K         +  I V   L  +  +   G  E  ++   E       + P+
Sbjct: 122 IALVLENNK--------IDPTILVGGELEDIGGNAKLGNGEYLVAEGDESDGSILKLDPY 173

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I   HL  +  +E+I     ++ E + K G   LN D      +  K      K
Sbjct: 174 ILVITNIDNDHLDYYKSLEKIKDTFLKVIEKVPKGGFAVLNLDCENVRDIIRKIKN---K 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             Y++G S NADF+          S  +V  + + +  V     G H   N L  + +  
Sbjct: 231 EYYTYGFS-NADFKADNIVLNLSGSEFDVYFRNEKLGRVKLRVPGKHNILNSLSAIAVSK 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  D +T  KAL  F    G  +R +         L+ + Y  +P  +KA +  L    
Sbjct: 290 ILGLDFETTTKALERFQ---GVQRRIQLKGIIEDDILVFDDYGHHPTEIKATLETLR--- 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALK 415
                R + V          +     ++AE LSL         Y+     + G     + 
Sbjct: 344 -LYNRRLVVVF--QPHRYTRTYFLSKEIAEALSLGDVIILTEIYSAGEKPIPGVSSKNIY 400

Query: 416 DALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           D +     ++ V+  + +       +S L  GD+++   + +   +++   LL  
Sbjct: 401 DEIREKYPNLEVYLVDNIIEAASKAKSILKKGDLLLTLGAGNV--WKVGEALLAR 453


>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 485

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/496 (20%), Positives = 175/496 (35%), Gaps = 62/496 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L AI  + +  +   +V G+  DSR ++    F  I+G   DGH F   AV  GA  V+ 
Sbjct: 6   LSAILQNEMDDIFDPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVIS 65

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTI 128
              +      L +P   V D      ++A         +  I  +TG+ GKTTT  +   
Sbjct: 66  EYPL-----DLDVPNVVVADTKQTAGEVASVFYDHPSHRMRIYGVTGTNGKTTTATLTYD 120

Query: 129 ALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFELGMSHL 172
            L    +    + +                     +   LA M    V   + E+    L
Sbjct: 121 LLRLSGRRAGIVSTIGARFHNQTIETANTTPEAVVLHRILAEMVDAGVTDCVLEVSSHAL 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDS 230
            E R     +  H A  T +   HL     ++E A AKA +FE +E      I LN +DS
Sbjct: 181 MEGR--VAGIHFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEAIVLNAEDS 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   +       +YS      AD Q+  W+  +    + V+++   +EV    +G 
Sbjct: 239 ASHVMAEFAPTRRA-IMYSTTVDVEADVQV-IWRDET----VLVRMKEFKLEVPVRFMGA 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+   +G+VS     + T +  +      +GR +R      +     I   Y   P
Sbjct: 293 FNAANLAAAIGLVSTSDMALRTIVSNVPGLTLPKGRLERLATEDAE-----IYIDYAHTP 347

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
             ++  +S L Q     +   + VL      G+   +   D+  + S Y+   +      
Sbjct: 348 DGLEKCLSTLQQ----DDRALVVVLSA---AGDRDPTKRQDMGRIASRYSNEVIVTVHDV 400

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI- 461
                   +  L   +   +     E  +       +  ++G  VVV         R+  
Sbjct: 401 RMEDPKQIIRDLVKGIQPDVKYVTFEAREEALRHAATQALEGKRVVVVGKGHDHIERIGR 460

Query: 462 --------NLLLEEFP 469
                   N+LLEE  
Sbjct: 461 QSIPFNESNILLEELK 476


>gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
 gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
          Length = 508

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 163/460 (35%), Gaps = 47/460 (10%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLS 82
             ++GI  DSR IA    F A+ G   DG D+I  AV  GA  V+V         +   +
Sbjct: 27  IELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYIAQAVANGAAAVLVERAGHSADKLNYPN 86

Query: 83  IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P+  V+++   L+++          + +I+ +TG+ GKT+  ++     + + ++   I
Sbjct: 87  VPIIAVENLNLKLSEIAGRFYNNPSHELSIVGVTGTNGKTSCTQLYMQIANLLGRSCGVI 146

Query: 141 GSYNNHIGVPLT--LARMP------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+    I   L   L   P             D +  +  + +S  G  +     V+  +
Sbjct: 147 GTLGAGIDGQLNEGLNTTPDAISIQKILAEWRDHELAVAAMEVSSHGLEQGRVADVQFEL 206

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T ++  HL     +      KA +F          +N DD F   L  +  A     
Sbjct: 207 ALFTNLSRDHLDYHGSMLAYGETKARLF-RQPGLKCAVINIDDHFGCALVDEMPATTD-- 263

Query: 247 IYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +G   +      AD  +   +         +     S+E+    +G     N++  +
Sbjct: 264 VIRYGVEPDARTNHSADVWVDNVRFHPSGVNARLHSDWGSVEINSPLLGEFNLSNLVAVI 323

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +    + +    +       GR +R   +      T++ + Y   P  ++ A+  +
Sbjct: 324 CCFGLQGFALSSIANVIPKLMTVPGRMERIVSS---ADITVVVD-YAHTPDGLEKALLAM 379

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
            Q   H +G+   V G     G         L   L   +  HV ++           + 
Sbjct: 380 RQ---HTDGKLWCVFGC----GGNRDHGKRPLMGALVQRHADHVVVTSDNPRNESAAEII 432

Query: 416 DALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           D +   +       E       F  ++ + GD V++  K 
Sbjct: 433 DEILGGVDRPSMVEEDRGLAIQFAIANALPGDCVLIAGKG 472


>gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris]
          Length = 495

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 146/457 (31%), Gaps = 31/457 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            + +     V+G+ +DSR++ P +AF AI G    G  F   A+  GA  ++       +
Sbjct: 13  DVALARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAIL-FEPPAPA 71

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              +      V  +   L  LA            +I +TG+ GKT+T ++L  AL+ +  
Sbjct: 72  DLPVPADAIAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 136 TYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               IG+    +                         D       + +S     +     
Sbjct: 132 PTGTIGTLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGRVDA 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+  +AV T +   HL     + +  +AKA++F          +N DD+F   L A    
Sbjct: 192 VQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLR-AAVVNLDDAFGRTLFAALDP 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  S      A  Q +  +         + +   +  V    +G     N+L   G
Sbjct: 251 ALHAIGVSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLLAVAG 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L        + L    P  GR  R           L+   Y   P +++ A++ L 
Sbjct: 311 ALHALDIAPAQIAEVLGRLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALTSLR 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGFHVLALKD---- 416
               H + R I V G   E     +     +AEV +   I +     G     +      
Sbjct: 368 S---HAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVADILR 424

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              R                  S     D+V++  K 
Sbjct: 425 GFARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKG 461


>gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
 gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
          Length = 500

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 28/411 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L   I    +G      VNGI+  S  + P +AFF + G   DGH F   A+ +GA
Sbjct: 4   TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++VV   +  +  +  +    V D     A               ++ ITG+ GKTTT 
Sbjct: 63  KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGKTTTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGM 169
            ++        K    IG+    IG                  L     D    +  + +
Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEV 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S        T      +   + +   HL      E    AKA +F          +  DD
Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR-VICIDD 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + + L  +  ++   ++ + G   +A       +     + + + ++G      +  +G
Sbjct: 241 KWGKELLRRC-SVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N++   GI   L    +T ++AL       GR +R       G    +D  Y   
Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVD--YAHT 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P +++ A++ +  ++P   GR + V G     G+   S    + +     +
Sbjct: 358 PDALEKALASIMALTP---GRTVCVFGC---GGDRDASKRPIMGKAALAAD 402


>gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 455

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 148/417 (35%), Gaps = 42/417 (10%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +VV +  +         V      L  + +  +  RL  +   IA+ G+ GKTTT 
Sbjct: 63  GAAELVVYSSAIPPDNPEL--VIARKRGLPVIPRAEMLGRLMHQWKGIAVAGAHGKTTTT 120

Query: 124 EMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            ++   L       T    G  N              +   G  E  ++   E      L
Sbjct: 121 SLVAFLLERTGLDPTVIIGGEMNGF-----------GNAKAGGGEYLVAEADESDGSFSL 169

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + P I ++T +   HL  +  ++ I  A  E    + + G   LNYDD F   +  +   
Sbjct: 170 LHPSIVIVTNVEDDHLDYYRTVDAIRRAFREFIFKVPRDGVAVLNYDDPFLRQMAHELP- 228

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
                + ++G + +AD++L  +      S  EV  + + +        G H   N L  +
Sbjct: 229 ---FPVITYGCAPDADYRLAGFHLNCAVSSAEVYWRRELLGRFELTIPGRHNLLNALAVV 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  +     +AL  F    G  +R+          ++D+ Y  +P  +KA +   
Sbjct: 286 AVGRHLGLEFPEIARALRDF---RGVRRRFELVGESRGVRVVDD-YAHHPTEIKATLEAA 341

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHV 411
            Q  P    R IAV          ++  H +  +            +Y      + G   
Sbjct: 342 RQTRPK---RLIAVF--QPHRYTRTKFLHAEFGKAFTAADQVLLSRIYPAGEKPIPGVTA 396

Query: 412 LALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++D + +   V     E  D L   + S + +GD+V+   +     ++    LL+
Sbjct: 397 RLIRDEIQKQQRVEPLLFEEQDELVAHLASVVREGDLVITLGAGDI--WKSGRALLQ 451


>gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
 gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
          Length = 530

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/505 (19%), Positives = 175/505 (34%), Gaps = 100/505 (19%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++   + FFAIKG + DG+DFI   + +   LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVALVITDNKKNTIIDD---KVI 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+    
Sbjct: 71  YVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 130

Query: 147 IGVPLTLAR--------------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           I     L                         ++++  FE     L + R     ++ + 
Sbjct: 131 IFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQARL--GEIKVNT 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-------------------------------- 214
           A  T+ +  HL      E    AK ++F                                
Sbjct: 189 ACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHSTTAYILVREDAS 248

Query: 215 ------------------EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                             E L + G   LN D +  E +K       IK I + G  K  
Sbjct: 249 TGSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNIKFI-TVG--KKG 305

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D Q+ K     +   +      +        IG   A N+L+    +  +  D +  I+ 
Sbjct: 306 DVQITKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIGFDFNKIIEI 365

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+   P +GR +R          T I   Y+  P +++ A++ L  +    + R   V G
Sbjct: 366 LTQVKPVKGRMERI-------GNTNIFVDYSHTPDALEKALTELKNVK-LRDSRLNVVFG 417

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSE-- 428
                 +  +S    +A  L+     +V ++  +           + +       Y+E  
Sbjct: 418 CGGNRDKTKRSLMGQIAARLA----DNVIITDDNPRHEDPKLIRAEIISGIEKADYTEIA 473

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
             +    +  ++L   D++++  K 
Sbjct: 474 NREEAIKYGINNLKQDDILLIAGKG 498


>gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces lividans TK24]
 gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
 gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
          Length = 497

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 178/479 (37%), Gaps = 52/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            + GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 8   LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V+ +        +  +P   VDD    + +LA             I ITG+ GKTTT  
Sbjct: 66  AVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFL 178
           ++   L +  K+   IG+    IG     +    P   D       M   G     +   
Sbjct: 126 LVEGGLRTA-KSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVS 184

Query: 179 THLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +H +           IAV T ++P H+   SG+E+   AKA++F   +++    +N DD 
Sbjct: 185 SHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTP-KRSRLGVVNVDDE 243

Query: 231 FFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           +   L  ++       + ++      +AD++  + +     S   V   +G+ +      
Sbjct: 244 YGRRLAKEATV----PVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPL 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +  ++    D  +A   ++      GR +R      Q FF ++D  Y 
Sbjct: 300 AGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLER--VDEGQPFFAVVD--YA 355

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++++ +  L +++   EG+  AVLG     G+   +    +   ++ +  + V  S
Sbjct: 356 HKTDAVESVLRALRKVT---EGKLHAVLGC---GGDRDTTKREPMGAAVARFADTAVLTS 409

Query: 408 G----FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   LA+         ++P      V   E          +    GD V+V  K 
Sbjct: 410 DNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 468


>gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 485

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/455 (19%), Positives = 151/455 (33%), Gaps = 44/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G++ DSR++ P + FFA+ G   DG  FI  A+  GA  V        +     +
Sbjct: 19  ELAVTGLAADSRAVKPGDLFFALAGSKTDGARFIDAAIASGAVAVA----GDHAPARGRV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P     +   AL   A     R  ATI A+TG+ GKT+           +    A IG+ 
Sbjct: 75  PFIATPNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGYLSASIGTV 134

Query: 144 N-----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L R         V     E     L + R     VR   A
Sbjct: 135 GVVAPSRAVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYR--VDGVRVRAA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIK- 245
             T ++  H+     +      K  +F  L E  G   +  D    + +   + A  +  
Sbjct: 193 GFTNLSRDHMDYHPTVAHYLETKLRLFRDLVESDGIAVICADHDCSDTVIEAAGARNVPV 252

Query: 246 -TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G       +L +         + ++  G+   +    +G    +N L++ G+V 
Sbjct: 253 MRVGRRGDGARMGIRLVEAAIDGFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               DVD A  AL       GR +R       G    +D  Y   P ++  A+  L    
Sbjct: 313 GTGGDVDQAFAALEHLEGARGRIER--IGERNGAQVFVD--YAHKPDALAKALQALR--- 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDAL 418
           P+ + + + V G     G    +    L   ++  N   V ++  +  +          L
Sbjct: 366 PYAKRKLVVVFG----AGGDRDAGKRPLMGAIAADNADVVIVTDDNPRSEDPAAIRAAIL 421

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                 + L  GD +++  K 
Sbjct: 422 AAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKG 456


>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
 gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
          Length = 487

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 163/454 (35%), Gaps = 43/454 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  +++DSR + P + F A+ G   DG   I  AV +GA  V    +  A + + S  +
Sbjct: 17  LIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAVARGAAAVAFEAEGAAPMHAESAVL 76

Query: 86  FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V  + G L+ +             +I +TG+ GKT+  ++L  AL  + +    +G+ 
Sbjct: 77  VPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKTSVSQLLAQALDLLGERCGIVGTL 136

Query: 144 NNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIAVI 189
                  L   +       G+                + +S  G  +     +   +AV 
Sbjct: 137 GTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEFDVAVF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +E   +AKA++F          +N DD+F   L  ++H      +  
Sbjct: 197 TNLSRDHLDYHGSMEAYGAAKAKLFAW-PNLRCRVINLDDAFGRELAQQAH---DSRLIG 252

Query: 250 FGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +  S  + F    + +         +        +  + +G     N+L  +G +  +  
Sbjct: 253 YSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLLAVVGALLGMDY 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +K L       GR +R       G   L+   Y   P +++  +     + PH +
Sbjct: 313 GLDEILKVLPQLQGPAGRMQRL----GGGDKPLVVVDYAHTPDALEKVLEA---MRPHVQ 365

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419
           GR + + G   +     +     +AE L+      VW++  +  +         ++    
Sbjct: 366 GRLVCLFGCGGDRDRGKRPLMAAVAERLA----DVVWVTDDNPRSEDPAQIVADIRAGFC 421

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               V +          + +     DV+V+  K 
Sbjct: 422 APEQVQFIHGRGDAIARLIAQAEAADVLVLAGKG 455


>gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 491

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 167/474 (35%), Gaps = 53/474 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ ++   +       V  +  DSR +     F  I+G   DGH F+   V KGA +++
Sbjct: 12  LLEKLEYTCLQGSTDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFVPDVVAKGAKVLI 71

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLT 127
           V   + A      + V  V D   A+  ++ A       K   I ITG+ GKTTT  M+ 
Sbjct: 72  VEEAVEAPED---VTVILVKDTRYAMAFISAAYFGYPAEKLKTIGITGTKGKTTTTYMVK 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLG 173
             L +       IG+    IG  +  A+      + I E              + +S  G
Sbjct: 129 SILENAGYKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEMAEAGCDCVVMEVSSQG 188

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            +   T        + T I P H+        ++    K+ +   L++     +N DD  
Sbjct: 189 LMLHRTQGFVFDFGIFTNIEPDHIGPNEHKDFDDYLRCKSLL---LKQCKVGIVNRDDEH 245

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGI 288
           FE +          ++ ++G S  AD +    K    + ++ +    K      V     
Sbjct: 246 FEKIIEGHTC----SLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKGLLDFHVEIDIP 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  + I        +  +KAL V   K     R         FTL+ + Y  
Sbjct: 302 GKFSIYNSLTAIAICRHFKVSEENILKALKVAKVKG----RIEMVKVSDDFTLMID-YAH 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           N  ++++ ++ L +  PH   R + + G     G  S+    ++ EV        +  S 
Sbjct: 357 NAMALESLLTTLKEYHPH---RLVCLFGC---GGNRSKLRRYEMGEVSGKLADLTIITSD 410

Query: 408 ---GFHVLALKDALP---RSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                   A+ D +          Y E  D      +       GD++V+  K 
Sbjct: 411 NPRDEEPQAIIDDIKIGMAKTDGKYVEIPDRKEAIAYAIHHGEPGDIIVLAGKG 464


>gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
 gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
          Length = 500

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 28/411 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L   I    +G      VNGI+  S  + P +AFF + G   DGH F   A+ +GA
Sbjct: 4   TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++VV   +  +  +  +    V D     A               ++ ITG+ GKTTT 
Sbjct: 63  KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDIALVGITGTNGKTTTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGM 169
            ++        K    IG+    IG                  L     D    +  + +
Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEV 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S        T      +   + +   HL      E    AKA +F          +  DD
Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR-VICIDD 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            + + L  +  ++   ++ + G   +A       +     + + + ++G      +  +G
Sbjct: 241 KWGKELLRRC-SVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N++   GI   L    +T ++AL       GR +R       G    +D  Y   
Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVD--YAHT 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P +++ A++ +  ++P   GR + V G     G+   S    + +     +
Sbjct: 358 PDALEKALASIMALTP---GRTVCVFGC---GGDRDASKRPIMGKAALAAD 402


>gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
 gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
          Length = 488

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 162/435 (37%), Gaps = 52/435 (11%)

Query: 44  FAIKGPHYD---GHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGA 94
             + G       G D +  A      +VVV+T +            L IP+    ++L  
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAE 115

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +             +AI G+ GKTTT  ++        +           +    T A
Sbjct: 116 LMRYR---------HGVAIAGTHGKTTTTSLIASLYGQAGRDP--TFVIGGLLNSAGTNA 164

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
           R+     + I E   S    +      ++P ++V+T I   H+  +    E++ S   + 
Sbjct: 165 RLGTS-RYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   +  DD+    +  +      + + ++G S +AD Q   ++Q   Q    
Sbjct: 219 LHNLPFYGVAVVCIDDAVVREIMPRI----GRHMITYGFSDDADVQALNFQQQGHQCRFT 274

Query: 274 VQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+ +GK  ++++ +  G H   N L  + + +    D    I+AL+ F     R +    
Sbjct: 275 VRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGK 334

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   ++ + Y  +P+ + A I       P     +  V+         ++  + D 
Sbjct: 335 FATPKGEVMLVDDYGHHPSEVAATIKAARAGWPD----KRLVMAYQPHRYTRTRDLYEDF 390

Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441
            EVLS  +   +  V+ +G   +   D  AL RSI +       +  + D L   +   L
Sbjct: 391 IEVLSQVDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVL 450

Query: 442 VDGDVVVVKSSNSCG 456
            +GD+++ + + + G
Sbjct: 451 QEGDLLLTQGAGNIG 465


>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
 gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
          Length = 499

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 156/422 (36%), Gaps = 35/422 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           +     LL  +  H     P         + G++ +S ++ P   F  + G   DG  F 
Sbjct: 3   MVKLRTLLAELSTHLWETPPTDHPALDAEITGLTTNSWAVQPGYLFIGMPGTRVDGGSFW 62

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITG 115
             A++ GA   +V+  +  +       V  + D+  A  ++A         K  ++ +TG
Sbjct: 63  KSAIEAGAAAALVSDQVDRADVGTHC-VLALKDMPRACAEVAATFYDQPSQKLKLVGMTG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VD 159
           + GKTTT  ++   L++ +   A  G+           A                     
Sbjct: 122 TNGKTTTTHLIEYLLTTAQAPTALFGTLYARWPGHQVTAAHTTPFAVDLQQQLSDAVAAQ 181

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             FG+ E+    L + R L    +  +AV + +   HL     +E+  +AKA +F     
Sbjct: 182 CQFGVMEVSSHALAQKRVL--GCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFSPDYL 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N DD + + L  +   +G    +++     AD         +     ++     
Sbjct: 240 QGRAIINIDDVYGQRLVDQ---IGPNQCWTYSIEGPADLYTSGLSYETAGVKGQLHTPKG 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++E     +G     N+L  +G V  L   ++    AL+ F    GR ++   + +Q   
Sbjct: 297 TVEFFSSLVGQFNVSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDIS 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   P S++   ++L    P  +G+   V G   +     +    ++A  LS  
Sbjct: 357 VIVD--YAHTPDSLE---NLLKAARPFVKGQMACVFGCGGDRDRTKRPLMGEIAARLSDQ 411

Query: 400 NI 401
            I
Sbjct: 412 AI 413


>gi|298369634|ref|ZP_06980951.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282191|gb|EFI23679.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 469

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/438 (21%), Positives = 161/438 (36%), Gaps = 54/438 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V  +   V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKDNPEVVAANEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-- 283
             D +    +  K      K   ++G    AD      +    Q    V +  K  E   
Sbjct: 217 CVDSAHVRAILPKVS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVNMKGHERKT 272

Query: 284 ---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
              V +  G H   N L  +G+   + A V+   + L  F     R ++Y    L  G  
Sbjct: 273 FGVVLNMPGRHNVLNALAAIGVALEVGAPVEAIQQGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A ++      P     +  VL         ++    D  ++L+  
Sbjct: 333 ALVVDDYGHHPVEMAATLAAARGAYPE----KRLVLAFQPHRYTRTRDLFEDFTKILNTV 388

Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +   ++ V+ +G   +A  D  AL R+I V       Y E++  L   + + L DGD+V+
Sbjct: 389 DLLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCESVSELPAMLLNVLQDGDMVL 448

Query: 449 VKSSNSCGFYRLINLLLE 466
              + +    R+   LLE
Sbjct: 449 NMGAGNIN--RVPTALLE 464


>gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis
           HAW-EB4]
          Length = 488

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 166/477 (34%), Gaps = 53/477 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L++ +             + +++DSR++     F AI G   DG  FI  A ++GA  V+
Sbjct: 2   LIRDLLAPWFHYSGAEEFSELTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVL 61

Query: 70  VNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+TD     G       L I  F ++  + AL         + +  II +TG+ GKT+  
Sbjct: 62  VHTDSPEEHGKLVHEAGLQILFFQLNRQISALAA-QAYPLSQVRPQIIGVTGTNGKTSVT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVD-----VDFGIFEL 167
           +++        K  A +G+  N +             P+TL +   +      D    E+
Sbjct: 121 QLIAQLQLLQGKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R     V   +AV T ++  HL     ++   +AK  +F+       +  N 
Sbjct: 181 SSHGLVQGR--VEAVPFDVAVFTNLSRDHLDYHHTMDAYGAAKKRLFQFATLRAGLI-NC 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           DD+           L    +  F       A    +            +       ++  
Sbjct: 238 DDALGREWLTD---LASDKVIGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWPTGEAKLNS 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  LG + +L  D+   +       P  GR +R+     +   TL+ + 
Sbjct: 295 PLLGDFNLSNLLAALGALYLLGEDMHALVALAEKLEPVAGRMERFTT---KDEVTLVVD- 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++ A+  L     H +G+   V G   +     +      AE  +      V 
Sbjct: 351 YAHTPDAIEQALKALR---VHCKGKLWCVFGCGGDRDRGKRPMMAASAEQFA----DRVM 403

Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +         +   L    +             + +  V GD+V++  K 
Sbjct: 404 VTSDNSRSEDPNAIIADILAGLQHPKNALTQVDRQTAIKDVVAQAVAGDMVLLAGKG 460


>gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 489

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 141/425 (33%), Gaps = 50/425 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   ++LL  +    I       + G+S DSR +     F   KG  +DG  +I  A++K
Sbjct: 1   MTRLNELLGMLH---IACDDTRILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALRK 57

Query: 64  GAGLVVVNTDMVASIGSLSI---------PVFGVDDVLGALNKLAVAARLRSKAT--IIA 112
           GA +V+ +           +          V+  +DV      L             +I 
Sbjct: 58  GA-VVLCDKKRQWRKNGQKVEATSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVIG 116

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSY----NNHIG-------VPLTLARMPVDV- 160
           ++G+ GKT+   ++T  L   +K    IG++    N HI           TLA +  +  
Sbjct: 117 VSGTSGKTSVACIITHILRKQQKKTFRIGTHEVDDNQHIQAIPNTTPDSFTLANLLKEAI 176

Query: 161 ----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+    + + R     +     V T I   HL            K ++   
Sbjct: 177 QQGFTHIVMEVSSHAIDQNRIC--FMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKLRRY 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L+K G I +N D  +   L+  S A     + + G    A F +       + +   +  
Sbjct: 235 LKKDGFIIINKDFPYLMKLQHLSDA----KLITIGFDA-AHFTIEDMHLSEQGAIFTIN- 288

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                  V   +G     N    + +  +L    +  I +        GR +       +
Sbjct: 289 ---GYSFVIPLLGKMNVYNTTEAIALCHMLNITYEQLIASCQDLPYVSGRMELM-----K 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G    +   Y   P +++  +     I    +G+   V+G   E     +    D A   
Sbjct: 341 GKKHTVLLDYAHTPDAVEKLMEFARSI---CQGKLYIVVGCGGERDRSKRKLMADAACKY 397

Query: 397 SLYNI 401
           S   I
Sbjct: 398 SDMAI 402


>gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 462

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/434 (23%), Positives = 159/434 (36%), Gaps = 50/434 (11%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKL 98
           A+      GH     A   GA  VVV      +   V +  S  +PV     +L  L +L
Sbjct: 48  ALGVRTVIGH---AAANVNGADAVVVSSAVRADNPEVIAARSRQVPVVPRAQMLAELMRL 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKTTT  ++   L++              IG  L  A    
Sbjct: 105 KQG---------IAVAGTHGKTTTTSLVASILAAGG------MDPTFVIGGRLNAAGANA 149

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
            +  G F +  +   +  FL   + P I+V+T I   H+  +      +  A  E  + L
Sbjct: 150 CLGSGDFLVAEADESDASFL--FLSPVISVVTNIDADHMETYGHDFNRLKQAFVEFLQRL 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQL 276
              G   L  DD+    +  +      K I ++G    A+F          Q   + V++
Sbjct: 208 PFYGVAVLCADDANVREIMPQVS----KQIVTYGLDPAANFYAENVTAEGGQMRFDCVRV 263

Query: 277 QGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCA 333
            G    + V  +  G H   N L  + + S +    D  +KAL+ F     R +RY   A
Sbjct: 264 NGSVSRLPVTLNLPGRHNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYGEIA 323

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L  G    + + Y  +P  M A ++      P   GRR  +L         ++    D  
Sbjct: 324 LADGGCFTLVDDYGHHPVEMSATLTAARGAFP---GRR-LLLAFQPHRYTRTRDRFEDFV 379

Query: 394 EVLS---------LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLV 442
           +VLS         +Y  S   +      AL  AL  +  V   + E++  +   I   + 
Sbjct: 380 KVLSGVDALVLTEVYAASEQPIVAADGRALARALRVAGKVEPVFVESIGDVPQAILDIVR 439

Query: 443 DGDVVVVKSSNSCG 456
           DGDVV+   + S G
Sbjct: 440 DGDVVITMGAGSIG 453


>gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 499

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 153/466 (32%), Gaps = 61/466 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           +    G S+DSR +A  + F A+    +        F   A+  GA  V+  T++  +  
Sbjct: 19  KQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAVISETELGVANE 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135
            +        DV   + +       R        IIA+TG+ GKTT   ++   +S  ++
Sbjct: 77  WVC------SDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRLVAELISFQQQ 130

Query: 136 TYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLT 179
             A +G+  N I   LT +                       F   E     L + R   
Sbjct: 131 RCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNG 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAK 238
             +   IAV + ++  HL     +E  A AKA +F          +N DD    L+  A 
Sbjct: 191 CAIE--IAVYSNLSRDHLDYHGTLEAYAEAKALLFRF-SSLKVAIINLDDEHAALMINAA 247

Query: 239 SHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   I ++  ++N AD+ +         +   +     S  V    +G+   +N++
Sbjct: 248 KQNPAQPKILTYSLTQNTADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGHFNVENLV 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L        D+   +  +       GR +  R         L    Y   P ++   I
Sbjct: 308 AALIATEQAGFDLKALVAFVPELIGAPGRMQVIR-----DGERLFVVDYAHTPDAL---I 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
            VL  +  H   +  AV G   +     +          +L   + V L+          
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDPE 415

Query: 413 ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   + + I      +H          F+      GD+VV+  K 
Sbjct: 416 QIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|192359638|ref|YP_001983384.1| UDP-N-acetylmuramate--L-alanine ligase [Cellvibrio japonicus
           Ueda107]
 gi|190685803|gb|ACE83481.1| UDP-N-acetylmuramate--alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 159/439 (36%), Gaps = 49/439 (11%)

Query: 35  RSIAPQE-AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           R +      F      +  G D +++     +  V      V     L IPV    ++LG
Sbjct: 56  RLVQKGARIFIGHDASNVQGADVVVN-----SSAVNNTNPEVVGARELRIPVVRRAEMLG 110

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPL 151
            L +             IA+ G+ GKTTT  +L   L++  +  T+   G  N+      
Sbjct: 111 ELMRYR---------HGIAVAGTHGKTTTTSLLASILAAADLDPTFIIGGLVNST----G 157

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAK 210
           T A++     + + E   S    +      ++P +A++T I   H+  +      +    
Sbjct: 158 TNAQL-GGSRYLVAEADESDASFLH-----LQPMVAIVTNIDADHMETYGGDFSRLKKTF 211

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E    L   G   +  +D     +         + I ++G +++ DF+    +Q    S
Sbjct: 212 VEFLHNLPFYGLAVVCGEDPVIRDIIPDVA----RPILTYGFNEHCDFRATNIRQDKMSS 267

Query: 271 WMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +V   G  + + +  +  G H   N    + + +            L+ F     R +
Sbjct: 268 EFDVLRPGNPEPLHIRLNIPGIHNVLNATAVIAVATDEGISDSAIQAGLANFQGVGRRFQ 327

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            Y         T++ + Y  +P  + A I  +    P    R + V          ++  
Sbjct: 328 VYGNFPVGDGSTMLVDDYGHHPREVAAVIKAVRDGWPE--RRLVMVY--QPHRFTRTRDL 383

Query: 389 HIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFI 437
           + D  EVLS  +      V+ +G   +   D+  L RSI         + ET+DG+   I
Sbjct: 384 YEDFVEVLSTVDALVMLEVYSAGEEPIPGADSRHLCRSIRARGVIEPVFVETVDGVPDVI 443

Query: 438 QSSLVDGDVVVVKSSNSCG 456
           +  +  GD+V+ + + + G
Sbjct: 444 KDLVRAGDIVITQGAGNVG 462


>gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
 gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
          Length = 474

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 159/427 (37%), Gaps = 46/427 (10%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
              +  + DG D ++      +  V      VA+     IPV     +L  L +      
Sbjct: 66  IGHRAENIDGADVVVT-----STAVNTENLEVAAAHERRIPVVPRAQMLAELMRFR---- 116

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVD 161
                  IA+ G+ GKTTT  +    ++      T+   G  N+      T AR+     
Sbjct: 117 -----HGIAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNS----AGTNARLGQS-R 166

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
           + + E   S    +      ++P  A++T +   H+  +     ++ +   E    L   
Sbjct: 167 YLVAEADESDASFLH-----LQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFY 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGK 279
           G   +  DD     L  + +    + +  +G S++AD +    +Q    +   V + +G+
Sbjct: 222 GVAVMCVDDPVVRKLLPRVN----RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGE 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            ++V  +  G H   N L  + + +   A  +  I+ L+ F     R          G  
Sbjct: 278 PLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTGVGRRFDVQGDYHFDGGS 337

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-- 397
             + + Y  +P  + A I  + +      GRR+A+L         +Q  + D  EVLS  
Sbjct: 338 ATLVDDYGHHPREVAATIDAIRE---GWPGRRLAMLFQ-PHRYTRTQDLYEDFVEVLSGV 393

Query: 398 -------LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  +Y      + G    AL  +L  R +   + +  D L   + S L +GD++V 
Sbjct: 394 DVLLMLEVYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVT 453

Query: 450 KSSNSCG 456
           + + + G
Sbjct: 454 QGAGNVG 460


>gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
 gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
          Length = 480

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 150/427 (35%), Gaps = 36/427 (8%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L++        G      V+G +ID+R +AP   F A +G   +G DFI  AV  
Sbjct: 1   MRLGSLIEEQDAKLGAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARMNGEDFIPAAV-- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                 V                  D+      +LA           +A+TG+ GKT+T 
Sbjct: 59  --QAGAVAVVARPEARVEGAIHIAHDNPRRLFAQLAARYFAPFPEMTVAVTGTNGKTSTV 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
           E+       +    A IG+      V      +                   +    FE 
Sbjct: 117 ELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLSNMSGLKREGITHAAFEA 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226
               L + R  T  +    A  T ++  HL     ++    AK  +F+G +   G   + 
Sbjct: 177 SSHGLAQYR--TEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDGVVAPDGAAVVW 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +  ++   G++ + S G    A  +L           +EV+++GK  +V   
Sbjct: 235 ADDEWSDKVIRRATKRGLR-VLSVGVQGQA-LRLANRTPTQLGQTLEVEVEGKPYKVSLP 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG + A N L    +V     DV   ++ L    P  GR +R           +    Y
Sbjct: 293 LIGAYQAANALTAAALVIAGGEDVGKVLELLGRVQPVRGRLERAVITRAGAPVYV---DY 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++AAI  L    PH +GR I + G     G+        + +V +     HV +
Sbjct: 350 AHTPDGLRAAIEALR---PHTKGRLITLFGA---GGDRDAGKRPQMGKVAADL-ADHVIV 402

Query: 407 SGFHVLA 413
           +  +  +
Sbjct: 403 TDDNPRS 409


>gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 481

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 37/393 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV    ++L  L +L            IAI G+ GKTTT  M+   L    +    
Sbjct: 89  ENRIPVVRRAEMLAELMRLKS---------TIAIAGTHGKTTTTSMIAGLL-DCGEIDPT 138

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           + +    I    + AR+  D D+ + E   S    +R     +   IAV+T I P HL +
Sbjct: 139 VINGGV-IEQFGSNARL-GDSDWMVVEADESDGSFLR-----LDGTIAVVTNIDPEHLDH 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +   E +  A  E    +   G   L  D    + + AK      + + ++G S  AD  
Sbjct: 192 YGDFEGVKRAFVEFIHNVPFYGAAILCVDHPEVQAVIAKVR---DRRVITYGFSLQADIC 248

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
               K  +  +  +V ++ +  E            G H  QN L  + +   +    +  
Sbjct: 249 AVNVKPEAGGNRFDVMVRQRGQEDRRIENVFLPMPGRHNVQNALAAIAVSLEMNCSDEVI 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI--SPHGEGRR 371
            +  + F     R  R      +G    + + Y  +P  ++A +S   +   +     R 
Sbjct: 309 REGFARFGGVRRRFTRVGTVPVEGGSATVIDDYAHHPVEIRAVLSAARESVDAMDTPARV 368

Query: 372 IAV-----LGDMCEM-GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           IAV        + E+ G+    F+  D   V  +Y      + G    AL D +    H 
Sbjct: 369 IAVMQPHRFSRLGELMGDFQACFNEADQVYVAPVYAAGEDPVEGVDAAALVDGIKSLGHR 428

Query: 425 HY--SETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           H       + L   +   L  GD+V+   +   
Sbjct: 429 HAQTIADREELVRALAPQLEPGDLVLCLGAGDI 461


>gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii ATCC 27126]
          Length = 521

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 166/499 (33%), Gaps = 74/499 (14%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           ++A+        P   + G+++DSR +  + AF AIKG   DG DFI  A+  GA +++ 
Sbjct: 10  IKALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILA 69

Query: 71  NTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            T+       M     S+ I ++ +  +L AL           K T +A+TG+ GKT+T 
Sbjct: 70  QTEDSSAHGQMEMRDHSVIISLYELPQMLSALAAAF-YDYPAQKMTTVAVTGTNGKTSTV 128

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------------------IGVPLTLAR-MPVDVD 161
           ++LT    ++    A IG+  +                      I +   LA  +  +V 
Sbjct: 129 QLLTQLKDALGTRSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVR 188

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
              FE     L + R  T  V+  IAV T +   HL     +EE   AK  + +      
Sbjct: 189 HTAFEASSHALVQGRLGT--VKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQ-PGLK 245

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------------------FQLRKW 263
            + LN +D   +     +    I  I++       D                        
Sbjct: 246 AVVLNVNDDESKKWDGAADK-SITRIWTGIDESGLDGSGESECLREHNNPQSRHCFATNA 304

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              +     E+     S  +     G     N+L  +G +       D  + A++   P 
Sbjct: 305 SYHAGGCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPV 364

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR + +               Y   P +++    VL     H  G+   V G   +  +
Sbjct: 365 PGRMEVFPVTGAANLVV----DYAHTPDALE---KVLLSAKFHTTGKVWCVFGCGGDRDK 417

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLF 434
             +      AEV        + ++  +  +         +   L            +   
Sbjct: 418 GKRPLMGQAAEV----GADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAI 473

Query: 435 LFIQSSLVDGDVVVV--KS 451
                   + D+++V  K 
Sbjct: 474 RHCLEHAHESDIIIVAGKG 492


>gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
 gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
          Length = 488

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 161/435 (37%), Gaps = 52/435 (11%)

Query: 44  FAIKGPHYD---GHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGA 94
             + G       G D +  A      +VVV+T +            L IP+    ++L  
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAE 115

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +             +AI G+ GKTTT  ++        +           +    T A
Sbjct: 116 LMRYR---------HGVAIAGTHGKTTTTSLIASLYGQAGRDP--TFVIGGLLNSAGTNA 164

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
           R+     + I E   S    +      ++P ++V+T I   H+  +    E++ S   + 
Sbjct: 165 RLGTS-RYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   +  DD+    +  +      + + ++G S +AD Q   + Q   Q    
Sbjct: 219 LHNLPFYGVAVVCIDDAVVREIMPRI----GRHMITYGFSDDADVQALNFHQQGHQCRFT 274

Query: 274 VQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+ +GK  ++++ +  G H   N L  + + +    D    I+AL+ F     R +    
Sbjct: 275 VRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGK 334

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   ++ + Y  +P+ + A I       P     +  V+         ++  + D 
Sbjct: 335 FATPKGEVMLVDDYGHHPSEVAATIKAARAGWPD----KRLVMAYQPHRYTRTRDLYEDF 390

Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441
            EVLS  +   +  V+ +G   +   D  AL RSI +       +  + D L   +   L
Sbjct: 391 IEVLSQVDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVL 450

Query: 442 VDGDVVVVKSSNSCG 456
            +GD+++ + + + G
Sbjct: 451 QEGDLLLTQGAGNIG 465


>gi|288939895|ref|YP_003442135.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
 gi|288895267|gb|ADC61103.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
          Length = 475

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 150/428 (35%), Gaps = 48/428 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVAARL 104
             + GH       +  A +V    D             IP+    ++L  L +       
Sbjct: 62  EVFIGHR-AEQVSEADAVVVSTAIDETNPEIQQARERRIPIVRRAEMLAELMRFYYG--- 117

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 +A+ G+ GKTTT  ++   L+         G  +    +   L     +   G 
Sbjct: 118 ------VAVAGTHGKTTTTSLVASILAE--------GGLDPTFVIGGRLNSAGANARLGS 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            +  ++   E       ++P ++++T I   H+  +    + +     E    L   G  
Sbjct: 164 TKYLVAEADESDASFLYLQPMVSIVTNIDADHMRTYGNDFDRLRQTFMEFLHHLPFYGLA 223

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  DD     L  +      + + ++G    AD +    +Q   ++   V   G   E 
Sbjct: 224 VLCIDDPEVRALVPEVP----RPVRTYGTRPEADLRASDIRQEGMRTSFLVH--GAEFER 277

Query: 284 ----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                 +  G H   N L  + +   L  + +  ++AL+ F     R         QG  
Sbjct: 278 PLAVTLNLPGRHNVLNALAAISVALELGVEDEAIVRALAGFQGVGRRFVAREVVDPQGRR 337

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  + A    L+       GRR+ ++          + F  D  EVLS  
Sbjct: 338 LLVVDDYGHHPRELAA---TLAAAREGWPGRRLVLVFQPHRYSRTQEQF-EDFVEVLSTP 393

Query: 400 NIS---HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +      V+ +G   +   D  AL R+I V       +++ +D +   + + + DGD+++
Sbjct: 394 DALVLCEVYPAGETPIPGADGRALSRAIRVRGELDPIFAQGLDAVPGLLANIIRDGDILL 453

Query: 449 VKSSNSCG 456
           V  +   G
Sbjct: 454 VSGAGDIG 461


>gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
 gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
          Length = 491

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/461 (19%), Positives = 161/461 (34%), Gaps = 44/461 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
               VP   +  + +DSR +   + F A++G   DG +F+  A   GA   +V  ++   
Sbjct: 19  LAAEVPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDELPLR 78

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +    +P+  + ++   L ++A         +  I A+TG+ GKTT  ++    + S+  
Sbjct: 79  LSP--LPMVVIPNLRHRLCEIAGRFFREPSREMHIAAVTGTNGKTTVSQLFARLVRSVGY 136

Query: 136 TYACIGSYN---------------NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLT 179
               IG+                 + I +   LA         +  E+    L + R   
Sbjct: 137 DCGVIGTLGASLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHALHQGR--V 194

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           + +    A+ T +   HL     ++    AKA +F   E   T  LN DD F   L  + 
Sbjct: 195 NTLDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLFAF-ESLRTAILNADDPFSRHLAQRV 253

Query: 240 HALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 ++  +G +   A+ +L   K          +       +    +G   A N+L 
Sbjct: 254 PT--GVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAVNLLA 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++A+       GR +  R A   G   +ID  Y   P +++  + 
Sbjct: 312 ALTAALQAGLPFKAVMEAVESLASVPGRMEPLRVA--GGPLVVID--YAHTPDALRQVLL 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            L +     +G  IAV G     G+  +     +AE +S      V  S        LA+
Sbjct: 368 TLRE---QCQGSLIAVFGC---GGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAI 421

Query: 415 KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S+   Y               S    D V++  K 
Sbjct: 422 IADIQASMKGDYLVCADRAEAIRLAIESAGAKDCVLIAGKG 462


>gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 503

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 169/488 (34%), Gaps = 52/488 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +  H+L +A+  H   +     ++ IS DSR I+    FF + G   DG  F   A
Sbjct: 1   MN--YQLHELFKAVGIHRQIVGKDLIIDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGAL---NKLAVAARLRSKATIIAITGS 116
           +  GA   V+  +        +   VF V D +             R  S+  +I +TG+
Sbjct: 59  LASGAVAAVIGEEAAQKDPPSNEDMVFVVSDPVAHWMGEMASVFWKRPSSQIDLIGVTGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDV 160
            GKTTT  ++         T A  G+  N       +A                 +    
Sbjct: 119 NGKTTTTYLIEHLCKQSGITSALFGTLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGA 178

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--- 217
             G+ E+    L +            AV T +   HL     +E    +KA +F+     
Sbjct: 179 RLGVMEISSHALDQ--RRVAGCSFSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLR 236

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           +K     +N DD +   L  + +    +         S   +  L      ++     + 
Sbjct: 237 DKESCSVVNIDDPWGLRLSKQLNKSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLH 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                   V   IG     NML  +GI+      +   + ++  F    GR ++ +    
Sbjct: 297 SPFGQGPFVSSLIGRFNLMNMLEAVGILIQHGVSLQELLPSIKSFSGVPGRMEQIKV--- 353

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   ++   Y   P  +K A+  L        GR   V G     G+  +S    +  +
Sbjct: 354 EGDLPVVLVDYAHTPDGLKNALIALRSFGS---GRLFCVFGC---GGDRDRSKRPLMGAI 407

Query: 396 LSLYNISHVWLSGFHVLA------LKDALP----RSIHVHYSETMDGLFLFIQSSLVDGD 445
            S +   HV L+  +         L D LP     +  +   +  + + + I  +L  GD
Sbjct: 408 ASKF-ADHVTLTSDNPRTEDPQQILNDVLPGIATETELIIEIDRANAIQMAIMKAL-PGD 465

Query: 446 VVVV--KS 451
           +V++  K 
Sbjct: 466 IVLIAGKG 473


>gi|222053882|ref|YP_002536244.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
 gi|254766004|sp|B9M173|MURC_GEOSF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221563171|gb|ACM19143.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
          Length = 458

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 152/416 (36%), Gaps = 46/416 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V       IPV    ++L  L ++            IAI G+ GKTTT  M
Sbjct: 72  SAVHDDNPEVIEARERLIPVIPRAEMLAELMRMKYG---------IAIAGTHGKTTTTSM 122

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L++        IG   N IG    L +       G F +  +   +  FL   + P
Sbjct: 123 VATILATGGIDPTIVIGGRLNSIGTNARLGQ-------GKFLVAEADESDGSFL--KLSP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I   HL  +SGIEEI     E    +   G   L  D+     +      L  
Sbjct: 174 TIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLDNGNVADII----PLVK 229

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           K   ++G +  ADF+  + +     +      +G+ + E+  +  G H   N L T+ + 
Sbjct: 230 KRFTTYGLTAQADFRATEIRHEGFTTSFVAHYKGQKLGEISFNMPGAHNVLNALATIAVA 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L    +      + F    G G+R++         ++D+ Y  +P  +KA    L+  
Sbjct: 290 TELDMRFEDI---QAGFKSFGGVGRRFQVKGEVNGIMVVDD-YGHHPTEIKA---TLAAA 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
               + R + V          ++    +  +         +  +Y      + G    AL
Sbjct: 343 KGGWDRRLVVVF--QPHRYTRTKELFEEFVKAFYDADILILTDIYPAGEQPIEGVTAEAL 400

Query: 415 KDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLE 466
              + R     V +    + +   + S + +GD+V+   + +      +L+  L E
Sbjct: 401 SARIKRHGQREVTFVADRNKVCDHLLSIVKEGDIVLTLGAGNILQAGEQLVEKLRE 456


>gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 494

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 151/451 (33%), Gaps = 45/451 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR +     F AI G + DG  +I  A++ GA  V+     + + G      +
Sbjct: 27  VKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANAVIAQACPLNTHGKTEVRDN 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+  VDD+   L+ LA          +IA+TG+ GKTT  +++      +    A +G+
Sbjct: 87  VPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQWFELVSCHAAVLGT 146

Query: 143 YNNH---------------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186
             N                I V  TL  +      +   E+    L + R     +   +
Sbjct: 147 TGNGFIDDLKPATNTTGNAIEVQQTLHALEQQGAKYTALEVSSHGLSQGR--VKALEFEV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            + + ++  HL     +E    AK  +F          +N DD   +       +    +
Sbjct: 205 GIFSNLSRDHLDYHGTMENYEQAKFSLF-NQHCCKQAIINIDDPVGKRWLGYLDSAVAVS 263

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++     ++     +          +         E+    IG   A N+L+ +  +  +
Sbjct: 264 LHPQDFPRS--VWAKCVNYSVNGISLAFDGMFGDGEIEVALIGGFNANNVLIAMTTLLCM 321

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    I    +  P  GR + +  +            Y   P +++ A+  L     H
Sbjct: 322 GVDKKQLIATAPLLRPVIGRMELFTASKQAKVIV----DYAHTPDALEKALHALKD---H 374

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
             G    + G   +     +     ++E L+      V ++  +  +         ++  
Sbjct: 375 SGGALWVIFGCGGDRDVGKRPMMGRISEELA----DRVIITDDNPRSEDPTLIVKDIQAG 430

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + R   V           +        D+++
Sbjct: 431 MSRPESVMVEHDRRAALKYAIEHSRPEDIIL 461


>gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
 gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
          Length = 495

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 94/458 (20%), Positives = 155/458 (33%), Gaps = 47/458 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   V   ++DSR     + FFA+ G   DG  F   AV +G   VV   +        
Sbjct: 31  DPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVLAVVAEAERPPWF-DP 89

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           S+    V +   A+   A  A  +   TI A+TG+ GKT+         + +    A +G
Sbjct: 90  SVSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVAAFARQIWARLGHASASLG 149

Query: 142 SYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185
           +                 + I +  TL  +  + V     E     L + R     VR  
Sbjct: 150 TLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLEASSHGLDQYRL--DGVRLS 207

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
               T ++  HL     +E    AK  +F E L + G   +  D +    + A+  A   
Sbjct: 208 AGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVDSTEGSHV-AQVAADHE 266

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G +  A   L           +EV+  G+   +    +G   A N L+  G+V 
Sbjct: 267 LNVLGIGVA-GAGISLLARHDEGLGQLLEVEADGRRFTLRLPLVGAFQACNALVAAGLVL 325

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  A    A+ AL       GR +        G F      Y   P ++  A+  L    
Sbjct: 326 LTGAGAREALLALETLEGVPGRLELVGTKDGAGVFV----DYAHKPDALANALDALR--- 378

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           P+  GR I V G     G+  +     +  + +      V ++  +           A+ 
Sbjct: 379 PYATGRLIVVFGC---GGDRDRGKRPIMGAIAAE-KADVVIVTDDNPRSEDPAFIRAAIL 434

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +A P +  +                   GDVV++  K 
Sbjct: 435 EAAPEAQEIG---DRAEAIAAAIGMAKSGDVVLIAGKG 469


>gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 541

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 169/514 (32%), Gaps = 87/514 (16%)

Query: 11  LQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
             A+    +  G   +  V  ++ DSR   P   F A+ G   DGHDF+  AV++G  +V
Sbjct: 9   AAAVDYTVLAEGASAELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVV 68

Query: 69  VVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
           +              +      D   A  +L  A R     +  +I ITG+ GKTT   +
Sbjct: 69  LCQPGCRLPTEKAPEVLHLATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYL 128

Query: 126 LTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFG-----IFELGM 169
           L   +         IG+ N                P +L  +  ++        I E+  
Sbjct: 129 LEDLIRRAGGEPGVIGTVNYRYRNRVLPATHTTPDPESLQPLLREMAEAGVSHVIMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFL--- 225
             L + R     +    A+ T ++  HL     +E   + K  +F   L+      +   
Sbjct: 189 HALEQQR--VAGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRYLKPGAAAVVLSG 246

Query: 226 --NYDDSFFELLKA----------------KSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               DD+  +                    +    G   ++  G +   + +L + +   
Sbjct: 247 RAEQDDASLDCWNQRLIDELSPRVLPPGCRRRPKAGEVRLWRCG-AAGNELRLLRRRLSL 305

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E+Q    +  +    +G     N+L   G+   L     T   AL+   P  GR 
Sbjct: 306 AGIEAELQSSEGAWRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAALADAAPPPGRL 365

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R+R    +G   L+D  Y   P ++   +  L +++    GR + V G   +     + 
Sbjct: 366 ERFRS--RRGVEVLVD--YAHTPDALGHVLKALRRLAT---GRLVVVFGCGGDRDRAKRP 418

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG----LFLFIQSSL-- 441
              ++A  L+      V L+  +  +   A   +       T+D     L   + + L  
Sbjct: 419 LMGEVAAALA----DIVVLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLNR 474

Query: 442 ------------------------VDGDVVVVKS 451
                                     GDVV+V  
Sbjct: 475 RTTCQGYDLVVSRRQAIRDTIYHARSGDVVLVCG 508


>gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 491

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 146/453 (32%), Gaps = 35/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++   +AF AI G    G  F+  A   GA  V+       +      
Sbjct: 15  DVQVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVL-FEPPAPAELPAPA 73

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V  +   L  +      +      ++ +TG+ GKT+T ++L  AL+ +      +G
Sbjct: 74  DAIAVPGLRARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQLLAQALTLLGMPTGTLG 133

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    +                   L     D       + +S     +     V   +A
Sbjct: 134 TLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V T +   HL     + +  +AKA++F   GL+      +N DD F   L A        
Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA---AVVNLDDDFGRTLFAALDPALRA 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S      A  + +  +         + + G+   V    +G     N+L   G +  
Sbjct: 251 IGVSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFNVDNLLAVAGALYA 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        + L    P  GR  R           L+   Y   P +++ A++ L     
Sbjct: 311 LDIAPAQIAEVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALASLRS--- 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFHVLALKD----ALPR 420
           H + R I V G   E     +     +AEV   +  ++     G    A+         R
Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVADILRGFAR 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                             S     D+V++  K 
Sbjct: 425 PDAAIVQRDRAAAIHQAISMASASDIVLIAGKG 457


>gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
          Length = 492

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 158/461 (34%), Gaps = 39/461 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               +     +  I  DSR +     FF I+G   DGH ++  A+ +GA  +V +  +  
Sbjct: 6   ELFKVESDLKIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLRR 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V DVL  LN++A         K T I +TG+ GKT    ++   L    
Sbjct: 66  Y--YQGIVYVQVPDVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARVVARLLGRYL 123

Query: 135 KT----------YACIGSYNNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLT 179
           K            A +         P+ L R     +  +V     E+    L   R   
Sbjct: 124 KMGYVGNNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKR--V 181

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V   I V T     H+     I+ +  +  ++F  L++ G   LN D+  F    + +
Sbjct: 182 DSVNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRFNHFLSMN 241

Query: 240 HALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    +   I S+G    AD   R  +   + S  ++ ++ +   V    I      N L
Sbjct: 242 YKDLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNTL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  +  L    +  + A+    P EG   R      +  F +I + Y  +  + +   
Sbjct: 302 AILTTLYALEMTPEEIVNAIKYIQPVEG---RMEVVPVKQPFHIIVD-YCQHAHNFEEVF 357

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +  +  +  G  IAV G     G         +  + + Y    +           + 
Sbjct: 358 KFVYGVKGN--GHLIAVFGAP---GRKDIHKRSKIGALANKYCDYVILTEQDERDDDIEG 412

Query: 418 LPRSIHVHYSETMDGLFL----FIQSSLV---DGDVVVVKS 451
           +   I     + +  +       IQ ++     GDV+++  
Sbjct: 413 ICEQIQEQIVDPISVIITNRRFAIQQAIDAACAGDVILILG 453


>gi|164688449|ref|ZP_02212477.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
 gi|164602862|gb|EDQ96327.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 16/258 (6%)

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI    ++  T+ +N DD     LK K     +K   +FG  K+       ++     +
Sbjct: 1   MEITTNFDENSTLIVNGDDDMLATLKGKDLKYNLK---TFGFEKDNTIYCVDFEMNDNDT 57

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V +  K  +     +G H   N +  + +   L   +D     L      + R    
Sbjct: 58  IFNVMIDNKIEKFYIPTVGEHNIYNAMAAILVGKTLNLTLDEIRNGLETLEITKSRMDVI 117

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +       +T+ID  YNA+  SM+AA+ VL++     + RR+A+LGD+ EMG  ++  H 
Sbjct: 118 K----NDNYTVIDSVYNASVDSMRAALKVLNR----YKTRRVAILGDIFEMGSFAEEGHK 169

Query: 391 DLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIH---VHYSETMDGLFLFIQSSLVDGDV 446
            + +  S  N   +   G     + K+AL  +++   VH+  T +      ++ L  GD 
Sbjct: 170 QVGKDASE-NADVIIAIGKDAEFISKEALENNMNKDNVHHFATKEEAMENFKNILQKGDT 228

Query: 447 VVVKSSNSCGFYRLINLL 464
           ++VK+S       ++  L
Sbjct: 229 ILVKASRGMHLEEVVEFL 246


>gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 517

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 161/480 (33%), Gaps = 44/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T H L  A  G ++  +       +  DSR IAP + F A  G   DG   +  A+ +
Sbjct: 12  LHTPHALQCA--GAALPWLRARVSGSLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIAR 69

Query: 64  GAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
           GA   +V    VA+    + P   +  +  +  A   +A     +   +  ++A+TG+ G
Sbjct: 70  GATACLVEQAGVAAFAFPAAPGASLASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNG 129

Query: 119 KTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDF 162
           KT+T   L  AL   +     A  G+    +   L  A M               VD   
Sbjct: 130 KTSTAWWLADALNGRAKSPVCALAGTLGLGVPPVLETAGMTTPDPLRLQRALRQFVDRGL 189

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               +  S +G  +      +   A+ T     HL     +     AK  +F+       
Sbjct: 190 SACAIEASSIGLEQGRLAGTQIRAAIFTNCTQDHLDYHGSMAAYWRAKRALFDW-PGLQA 248

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L A+     +  ++S      A    R     ++     V+       
Sbjct: 249 AVINIDDPAGAQLHAELAGR-VPDLWSISTQGPARLAARDITLAAQGLRCTVREGAAPQR 307

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG++  QN+L  L  +  L   +  A++A +   P  GR ++   A       L+
Sbjct: 308 LTTRVIGHYNLQNLLAVLATLRSLGWPLAEALQAGAGLQPVPGRMQQLALA----GQPLV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P ++  A+  L  ++    GR   V G     G    +    L    +     
Sbjct: 364 VVDYAHTPDALAKALQALRPLAARRAGRLWCVFGC----GGDRDAGKRPLMGAAAEQQAD 419

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + L+  +  +         +   + R   V              +     DV+++  K 
Sbjct: 420 RLLLTSDNPRSEDPDAILRQILQGISRRRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKG 479


>gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
 gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
          Length = 488

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 161/435 (37%), Gaps = 52/435 (11%)

Query: 44  FAIKGPHYD---GHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGA 94
             + G       G D +  A      +VVV+T +            L IP+    ++L  
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAE 115

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +             +AI G+ GKTTT  ++        +           +    T A
Sbjct: 116 LMRYR---------HGVAIAGTHGKTTTTSLIASLYGQAGRDP--TFVIGGLLNSAGTNA 164

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
           R+     + I E   S    +      ++P ++V+T I   H+  +    E++ S   + 
Sbjct: 165 RLGTS-RYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   +  DD+    +  +      + + ++G S +AD Q   + Q   Q    
Sbjct: 219 LHNLPFYGVAVVCIDDAVVREIMPRI----GRHMITYGFSDDADVQALNFHQQGHQCRFT 274

Query: 274 VQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+ +GK  ++++ +  G H   N L  + + +    D    I+AL+ F     R +    
Sbjct: 275 VRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGK 334

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   ++ + Y  +P+ + A I       P     +  V+         ++  + D 
Sbjct: 335 FATPKGEVMLVDDYGHHPSEVAATIKAARAGWPD----KRLVMAYQPHRYTRTRDLYEDF 390

Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441
            EVLS  +   +  V+ +G   +   D  AL RSI +       +  + D L   +   L
Sbjct: 391 IEVLSQVDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVL 450

Query: 442 VDGDVVVVKSSNSCG 456
            +GD+++ + + + G
Sbjct: 451 QEGDLLLTQGAGNIG 465


>gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
          Length = 489

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 149/404 (36%), Gaps = 39/404 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +             +A+ G+ GKTTT  ++
Sbjct: 89  AIPKNNPELEAAREHRVPVVPRAEMLAELMRFR---------HGVAVAGTHGKTTTTSLI 139

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +         G  +    +   L     +   G     ++   E       ++P +
Sbjct: 140 ASIFAE--------GGLDPTFVIGGLLNSAGSNARLGTSRFFIAEADESDASFLHIQPMV 191

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+  +    + + +   +    L   G   +  DD   + +  +      +
Sbjct: 192 AVVTNIEADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVMCIDDKTVQEIMPRV----TR 247

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++G S++AD +   + Q   +S  +V  +     +E+  +  G H  QN L  + + 
Sbjct: 248 PTVTYGFSEDADVRAVDFTQSGTKSHFKVIRRDYDGELEITLNLPGRHNVQNALAAIAVA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +          KALS F     R + Y      G    + + Y  +P+ + A I  + + 
Sbjct: 308 TEDGVSDQAIQKALSEFGGIGRRFQMYGDFKVDGKTITLMDDYGHHPSEVMATIEAMRRS 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--AL 418
            P    R + V          ++  + D ++VLS  +      V+ +G   +   D  +L
Sbjct: 368 WPE--RRLVMVY--QPHRYSRTRDLYEDFSKVLSEVDALLLLEVYAAGEEPIPGADSRSL 423

Query: 419 PRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            RSI         + E +  L   + + L DGDVVV + + + G
Sbjct: 424 CRSIRQRGKIEPIHVEKIAQLPELLSNILQDGDVVVTQGAGNVG 467


>gi|156342934|ref|XP_001620981.1| hypothetical protein NEMVEDRAFT_v1g222497 [Nematostella vectensis]
 gi|156206509|gb|EDO28881.1| predicted protein [Nematostella vectensis]
          Length = 279

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFL 225
           +G +H  EI FL  +  P    IT    AHL  F GIE +   K+E++  LEK   TIF+
Sbjct: 1   MGANHQKEIDFLCSIAEPDFGYITNFGKAHLEGFGGIEGVIKGKSELYNYLEKNEKTIFV 60

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    L   K+  L     YSF    ++D ++   +         V +   ++++  
Sbjct: 61  NLDD---TLQNEKTKKLKR---YSFSTQNSSDIKIDTIEANP-----MVIIGFNNLKIHS 109

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + IG + A N+   + I      +     +A+  + P   R +       +G   +I ++
Sbjct: 110 NLIGIYNANNINAAITIGKYFNIEDALIKEAIESYIPSNNRSQLI----TKGSNEIILDA 165

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP+SM AAI+   Q+    + +++ +LGDM E+G+ S   H  +  +L+   +   +
Sbjct: 166 YNANPSSMLAAITNFIQL--ITDKKKVLILGDMFELGKESIEEHKKIVTLLAETKL-ISF 222

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464
             G      K   P    +H+ +  +     + +   ++ +++++K S      R+++LL
Sbjct: 223 CIGALFFENKIDSPT---IHFHKDFESFSKELNKDYSLENNLILIKGSRGMALERVLDLL 279


>gi|39998159|ref|NP_954110.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sulfurreducens
           PCA]
 gi|48428299|sp|P61679|MURC_GEOSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39985105|gb|AAR36460.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens PCA]
          Length = 462

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 142/415 (34%), Gaps = 42/415 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       IPV    ++L  L ++            IAI G+ GKTTT  M+
Sbjct: 73  AVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG---------IAIAGTHGKTTTTSMV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G  +  I +   L  +  +   G  +  ++   E       + P I
Sbjct: 124 ATVL--------THGGIDPTIVIGGKLNTLGTNAKLGQGQFLVAEADESDGSFLKLSPTI 175

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   HL  +  GIE+I     +    +   G   L  +D     +  +      K
Sbjct: 176 AVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVK----K 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD +    +     +      +G  M EV     G H   N L  + +  
Sbjct: 232 RFVTYGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSMPGAHNVLNALACIAVAM 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        +  + F    G G+R++        T++D+ Y  +PA ++A ++      
Sbjct: 292 ELDVPFSQIQEGFATFG---GVGRRFQVKGEVNGITVVDD-YGHHPAEIRATLAAGKSGW 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKD 416
           P    RR+ V           + F          D+  +  +Y      + G     L +
Sbjct: 348 PE---RRLVVAFQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEAPIEGVSAERLAE 404

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + +     V Y    + L   + + +  GD+V+   + +   ++     L +  
Sbjct: 405 EIRKHGQRDVTYVADREALPEHLLTIVQPGDIVLTLGAGNI--WQSGEAFLAKLE 457


>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 435

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 145/418 (34%), Gaps = 43/418 (10%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
           ++GA  V    +    +    +P+  V  +   L+ +             ++ +TG+ GK
Sbjct: 1   KRGAAAVAYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTGTNGK 60

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------F 165
           T+  +++  AL ++ +    +G+        L   R        +               
Sbjct: 61  TSVTQLVAQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAV 120

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G  +     +   +AV+T ++  HL     +E  A+AKA++F          +
Sbjct: 121 AMEVSSHGLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-PDLKCRVI 179

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD F   L A         + ++ +    A    R  K   +     +        + 
Sbjct: 180 NLDDDFGRELAAVKQES---RLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLR 236

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +G +  L   +D  +KAL       GR +R           L+  
Sbjct: 237 SSLLGRFNLSNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRL----GGADKPLVVV 292

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  L    PH +GR + + G   +     +    ++ E L+      V
Sbjct: 293 DYAHTPDALEKVLEALR---PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGV 345

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           W++  +  +         ++     +  V + E        + +S    DVVV+  K 
Sbjct: 346 WVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 403


>gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
 gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
          Length = 473

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 139/393 (35%), Gaps = 39/393 (9%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IP+    ++L  L +             IA+ G+ GKTTT  ++   L++  +   
Sbjct: 96  KEHRIPIVRRAEMLAELMRYR---------HGIAVAGTHGKTTTTSLMASILAATGEAP- 145

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                   IG  LT A     +    + +  +   +  FL   ++P   ++T I   H+ 
Sbjct: 146 -----TFVIGGRLTSAGANAQLGSSAYLVAEADESDASFL--HLQPQTVIVTNIDEDHMD 198

Query: 199 NF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +    E++     E    L   G   L  DD     +         + + ++G  + AD
Sbjct: 199 TYDGDFEKVKHTFIEFVHNLPFYGLAVLCVDDENVREILPTLS----RPVLTYGIDQEAD 254

Query: 258 FQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           F   +  Q            +G+ +++     G H   N L T+ + + L  D       
Sbjct: 255 FYATEIVQTGRYCEFLAHRPEGEPLKIRLPMPGRHNVLNALATIAVATDLGVDASAIQAG 314

Query: 317 LSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L  F     R +  +  AL  G   +  + Y  +P+ + A I  +    P    R + V 
Sbjct: 315 LMGFEGVGRRFQEQKPLALPNGSNVMFVDDYGHHPSEVLATIKAIRAGWPEK--RLVMVY 372

Query: 376 GDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH- 425
                    ++  + D   VLS          Y+     ++G    +L  ++ +  +V  
Sbjct: 373 --QPHRYTRTRDLYEDFVRVLSQVDVLLLLDVYSAGEAPINGADSRSLCGSIRQRGNVDP 430

Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +  +   L   + + L +GD+++ + +   G 
Sbjct: 431 IHVGSEADLRSILSNVLREGDLLITQGAGDIGM 463


>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 498

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 169/484 (34%), Gaps = 65/484 (13%)

Query: 6   TFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHA 60
           TF  L  A +    +    QGFV    +DSR +   + F A+    +    +   F   A
Sbjct: 4   TFQQLYTANLSAEWMAQPFQGFV----LDSRKVQAGQIFIALTSLSQPEKTE--QFAQIA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGS 116
           + KGA  VV  T++  +          V +V   +        L +     A I+A+TG+
Sbjct: 58  LDKGALAVVSETELALANS------IVVPNVRHLMGGWQKQFLLATSQVQPARILAVTGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DV 160
            GKTT   ++   L    K+ A +G+  N I   L  +                      
Sbjct: 112 NGKTTISRLVAELLMLQGKSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGA 171

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +F   E     L + R     +   IA  + ++  HL     +E  A AK+ +F+     
Sbjct: 172 EFASIEASSHGLEQGRLAGSEIE--IAAYSNLSRDHLDYHGTLEVYAEAKSRLFQF-PSL 228

Query: 221 GTIFLNYDDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +N DD    ++ +A  +      I ++  ++ AD+ ++  +     +   +     
Sbjct: 229 KVAVINLDDEHAGVMIQAAQNNPAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQA 288

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +V +  +G+   +N++ +L +V     D+   +   +      GR +  R        
Sbjct: 289 EYQVQNPLLGHFNIENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIR-----DDA 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L    Y   P ++   + VLS +  H E +  AV G   +     +          +L 
Sbjct: 344 RLFVVDYAHTPDAL---VQVLSTLKRHVEQQLWAVFGCGGDRDRGKRPLMTQ----AALN 396

Query: 400 NISHVWLSGFH---------VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
               V L+  +            +K  +  S   VH          F       GD+VV+
Sbjct: 397 GADVVLLTSDNPRTENPEQIFADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVI 456

Query: 450 --KS 451
             K 
Sbjct: 457 AGKG 460


>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
 gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
          Length = 536

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 164/501 (32%), Gaps = 71/501 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL A+  H +       +  ++ DSR I P   FFA++G   DGHDFI  AVQ G
Sbjct: 24  MKLTQLLAALDSHDLHGDGAVEIKALTCDSRGIVPDSLFFALRGAAMDGHDFIPAAVQAG 83

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  VV+  +  A      IP   V D   A+  +A        S+  +I ITG+ GKTTT
Sbjct: 84  AVAVVLEDESRAPAA---IPWVRVRDGRSAMAWMAAEFHGNPTSRLPLIGITGTNGKTTT 140

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++   L +     A +G+ +   G  +  A                         + E
Sbjct: 141 TYLIEAILRAAGIPAAVLGTISYRFGDTVITASHTTPESTELQAAFTQLAAAGAKAFVME 200

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220
           +    L + R         + + + +   HL     +E    AK  +F  L      +  
Sbjct: 201 VSSHALEQKR--VDGCHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSELLKPTADKPL 258

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD     + A++       +  +G  +  D +  +     +     +     S
Sbjct: 259 RRAAINMDDEQGATVAARAAC----PVIGYGICRG-DVRAEELSLSVDGIRARLVTPKGS 313

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++V    +G     N+L  +     L   ++     +       GR +R     N+   T
Sbjct: 314 IDVSSRLLGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERV---DNRCGIT 370

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+ + Y     +++  ++ L +++   +GR I V G   +     +     +A  +S   
Sbjct: 371 LLVD-YAHTGDALENVLTTLKELA---QGRIITVFGCGGDRDPGKRPIMGRIAASMSDLA 426

Query: 401 IS--------------------------HVWLSGFHVLALKDALPRSIHVHYS--ETMDG 432
           I                             +            L       +   E    
Sbjct: 427 IVTSDNPRTEDPFSILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRRE 486

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
                      GD+V++  K 
Sbjct: 487 AISLAVRLARPGDIVLLAGKG 507


>gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 515

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 153/410 (37%), Gaps = 48/410 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  + +DSR +A   AF A+KG   DG DFI  AV  GA +++   D     G  S+
Sbjct: 28  DIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAVSLGAKVIIAECDTQQEHGQTSM 87

Query: 84  P----VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +    D+   L+ LA        S+  II +TG+ GKT+T ++ +   + + K  
Sbjct: 88  REQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTGTNGKTSTVQLTSQLAALLNKRA 147

Query: 138 ACIGSYNNHI-----------------GVPLTLARMPV-----DVDFGIFELGMSHLGEI 175
           A IG+  + +                    +T+ ++       +V     E+    L  +
Sbjct: 148 ASIGTLGSGVISCTGECASFGETINTTPDAITMHKLMAQFAQDNVKQVALEVSSHAL--V 205

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     ++  +AV+T +   HL     ++  A AK EI     +     LN ++   +  
Sbjct: 206 QKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQAKREILTQ-PELKFAVLNGNEIESKQW 264

Query: 236 KAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            A+        +  +G    +            ++ +  S+     +       E+    
Sbjct: 265 LAQLPNTVTPVV--YGIDDESLLLGNAQKVCLAKEVEYSSQGCRFTLVSSWGECEIQLSL 322

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N L  +     L   +           P  GR +R+    ++   T++ + Y 
Sbjct: 323 LGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRMERF---SDEKSPTVVVD-YA 378

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             P ++K A+  L Q   H EGR   + G   +  +  +S   + AE  +
Sbjct: 379 HTPDALKQALLALRQ---HSEGRLFVIFGCGGDRDKGKRSLMGEAAETCA 425


>gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
 gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
          Length = 493

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 158/481 (32%), Gaps = 51/481 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M     F + L+ ++   I       V  +  DSR       F   KG   D H+FI   
Sbjct: 1   MEVFMKFREWLEELEYDVISGNLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDV 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
           V+ G   +VV        G   +    V     AL  L+ A   R + K   I +TG+ G
Sbjct: 61  VKAGVKALVVERQAEIPDG---VTAIRVHSSREALALLSAARFGRPQEKMITIGVTGTKG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           KTTT  M+   L S  K    IG+    IG  +T         + +FE            
Sbjct: 118 KTTTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEY 177

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGT 222
             + +S           +R    + T I+P H+     +   E    K+++   L +   
Sbjct: 178 MVMEVSSQAFKMHRVDGIRFDYGLFTNISPDHIGPDEHADFAEYLYYKSQL---LSRCRI 234

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--- 279
             +N DD  +  +   +       + S+   + ADF   +    SE  ++ ++       
Sbjct: 235 GIVNRDDEHYREIIKDTAC----ELASYSLEQEADFMAGQIHYVSEPEFVGLEFDVTGRY 290

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E   +  G     N L  + + S L    +    AL           R     +    
Sbjct: 291 KLEARVNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLSVNG----RMEIVYSSKKC 346

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+I + Y  N  SM++ +  L +  P    R + V G     G  S+     + +     
Sbjct: 347 TVIVD-YAHNAVSMESLLKTLREYHPK---RLVCVFGC---GGNRSKDRRYSMGDSAGRL 399

Query: 400 NISHVWLS--------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               +  +        G  +  ++ ++ +                +       GD++ V 
Sbjct: 400 ADFTILTADNSRFEKTGDIIADIRSSIEKTGGEFIEIPDRREAIAYSMIHARPGDMIAVI 459

Query: 451 S 451
            
Sbjct: 460 G 460


>gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 472

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 164/434 (37%), Gaps = 52/434 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           F  HA     GA +VVV+T +      L       IPV    ++L  L +          
Sbjct: 57  FFGHAASNVEGASVVVVSTAISQENPELVAARELRIPVVRRAEMLAELMRYR-------- 108

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IAI G+ GKTTT  ++T   S      T+   G     +    T AR+     + I 
Sbjct: 109 -HGIAIAGTHGKTTTTALVTQIYSEAGLDPTFVNGG----LVKSAGTNARLGCS-RYLIA 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P + V+T I   H+  +    E +     +    L   G   
Sbjct: 163 EADESDASFLH-----LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAV 217

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S++AD +L  ++QC +Q +  +  + K  ++V
Sbjct: 218 MCIDDPVVRELLPRV----GRPMLTYGFSEDADVRLMDYQQCGQQGFFTIVRKDKPELKV 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    D D  I+AL+ F     R              ++ 
Sbjct: 274 TLNVPGRHNALNATAAVAVATEEGVDDDAIIRALAEFQGTGRRFDHLGEFETGNGTAMLV 333

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ +   I       P  + R + V          ++  + D A VL   ++  
Sbjct: 334 DDYGHHPSEVDVTIQAARAGWP--DKRLVMVF--QPHRYSRTRDLYDDFANVLEQVDVLL 389

Query: 404 ---VWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D  AL R+I         +    + L   + + + + D+V+ + +
Sbjct: 390 MLDVYAAGEAPIAGADGRALCRTIRGRGKLDPIFVANKEALPAALANIIQNDDLVLTQGA 449

Query: 453 NSCGFYRLINLLLE 466
              G  ++   L E
Sbjct: 450 GDVG--KIARQLAE 461


>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 506

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 100/488 (20%), Positives = 168/488 (34%), Gaps = 61/488 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + I+   +       V  I  DSR IA +  F  + G   DGH +I  AV+KG
Sbjct: 1   MKLSKICEKIKYECLQGSMDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A ++VV  D  A+    +I V  V+    AL  ++ A       K   I +TG+ GKTTT
Sbjct: 61  ASVIVVERDEEAAQIPGTITVLKVESARYALALMSAALFDYPAEKLITIGLTGTKGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L +  K    IG+    I                L RM         ++ + E
Sbjct: 121 TYMIKNVLEAAGKKVGLIGTIGAMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   R  T  +     V T ++P H+     +  EE    K+ +F   +      
Sbjct: 181 VSSQGLKMDR--TAGIMFDYGVFTNLSPDHIGPNEHASFEEYLECKSMLFRQCK---IGI 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---------DFQLRKWKQCSEQSWMEVQ 275
           LN DD   E + A         I+SFG   N          D          E   + + 
Sbjct: 236 LNADDEHSEAVAANHTC----EIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENGKLGMY 291

Query: 276 LQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              K     E   H  G     N L+T+ +  +        +      +  + +G+    
Sbjct: 292 FHVKGCMDCEARVHIPGRFSVYNSLVTMLVCHLAGISDQAILDG---LNKVQVKGRVEML 348

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +++ ++ +ID  Y  N  S ++ ++ L +  P    R I V G     G  S+    D+
Sbjct: 349 PVSKDYYLIID--YAHNEVSTRSVLTTLMEYHPK---RLICVYGG---GGNRSKLRRYDM 400

Query: 393 AEVLSLYNISHVWLS----GFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVD 443
            EV        V          +  + +         +      +       +   +   
Sbjct: 401 GEVTGEMADLCVLTCDNPRDEEIRDINNDIKVGLAKSNGKYIEIDDRKEAIAYCMVNAQP 460

Query: 444 GDVVVVKS 451
           GD++V+  
Sbjct: 461 GDMIVLLG 468


>gi|298507096|gb|ADI85819.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens
           KN400]
          Length = 462

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 142/415 (34%), Gaps = 42/415 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       IPV    ++L  L ++            IAI G+ GKTTT  M+
Sbjct: 73  AVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG---------IAIAGTHGKTTTTSMV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G  +  I +   L  +  +   G  +  ++   E       + P I
Sbjct: 124 ATVL--------THGGIDPTIVIGGKLNTLGTNAKLGQGQFLVAEADESDGSFLKLSPTI 175

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   HL  +  GIE+I     +    +   G   L  +D     +  +      K
Sbjct: 176 AVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVK----K 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD +    +     +      +G  M EV     G H   N L  + +  
Sbjct: 232 RFVTYGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSMPGAHNVLNALACIAVAM 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        +  + F    G G+R++        T++D+ Y  +PA ++A ++      
Sbjct: 292 ELDVPFSQIQEGFATFG---GVGRRFQVKGEVNGITVVDD-YGHHPAEIRATLAAGKSGW 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKD 416
           P    RR+ V           + F          D+  +  +Y      + G     L +
Sbjct: 348 PE---RRLVVAFQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEAPIEGVSAERLAE 404

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + +     V Y    + L   + + +  GD+V+   + +   ++     L +  
Sbjct: 405 EIRKHGQRDVTYVADREALPEHLLTVVQPGDIVLTLGAGNI--WQSGEAFLAKLE 457


>gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
 gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
          Length = 488

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 150/403 (37%), Gaps = 38/403 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +   L IP+    ++L  L +             +AI G+ GKTTT  ++
Sbjct: 88  AINAENPEIIAAKELRIPIVRRAEMLAELMRYR---------HGVAIAGTHGKTTTTSLI 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   +           +    T AR+     + I E   S    +      ++P +
Sbjct: 139 ASVYGQAGRDP--TFVIGGLLNSAGTNARLGTS-RYLIAEADESDASFLH-----LQPMV 190

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +V+T I   H+  +    E++ S   +    L   G   +  DD     +  +      +
Sbjct: 191 SVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRI----GR 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S +AD Q   + Q   Q    V+ +GK  ++++ +  G H   N L  + + +
Sbjct: 247 HLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVAT 306

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D    I+AL+ F     R +            ++ + Y  +P+ + A I       
Sbjct: 307 EDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGW 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALP 419
           P     +  V+         ++  + D  EVLS  +   +  V+ +G   +   D  AL 
Sbjct: 367 PE----KRLVMAYQPHRYTRTRDLYEDFIEVLSQVDCLLLLDVYSAGEAPITGADGRALC 422

Query: 420 RSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           RSI +       +  + D L   +   L +GD+++ + + + G
Sbjct: 423 RSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGNIG 465


>gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
 gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
          Length = 514

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 141/352 (40%), Gaps = 17/352 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFG 163
           R     +A+TGS GKT+TK  L   ++   K+     SYN  +G+  T+  ++    +  
Sbjct: 164 RLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTIREKLDKSHEVF 223

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL  +       L  L++P I+++T+I   H   F  ++ I                I
Sbjct: 224 IVELAENDNYGYSKLLELIKPQISILTSIGIQHFEEFESLDNIIQNFKNFILDERSGKKI 283

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQ-GKSM 281
             N DD   + +         K I +   ++ NA +++ + K   + +   +     +  
Sbjct: 284 IANIDDENIKNVLENIDTK--KEIITCAINEKNAQYKVEELKISKDGANFAIITPNNQKF 341

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               +  GY   +N+L+ +     L   V+  I+        + R +  R        T+
Sbjct: 342 YFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKPKHRLEIVR----NDTITV 397

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+++N+NP   K A+  L+        R+I V     E+GE     H  + + ++ Y +
Sbjct: 398 IDDTFNSNPKGFKMALEYLALF---ENKRKILVTPGFVELGEKEDEEHYKIGKEIAKY-V 453

Query: 402 SHVWLSGF-HVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V+L G      +   L  S     +   E ++ +    ++ L  GDVV+ 
Sbjct: 454 DVVFLIGEKRTEKIYKGLIDSNFEGKIFIVEDLNEVIEKFKTFLQPGDVVLF 505


>gi|228970145|ref|NP_273471.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           MC58]
 gi|325199611|gb|ADY95066.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 468

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 157/437 (35%), Gaps = 54/437 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 60  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 108 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 161 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 216 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 272 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A        +      +  VL         ++    D  +VL+  
Sbjct: 332 ALLVDDYGHHPVEMAAT----LAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTV 387

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 388 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447

Query: 449 VKSSNSCGFYRLINLLL 465
              + S    R+   LL
Sbjct: 448 NMGAGSIN--RVPAALL 462


>gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 511

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 145/406 (35%), Gaps = 48/406 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           I  +  +  I+  +  +     F AIKG   DGH FI  A + GA + VV          
Sbjct: 19  IDKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFIKKARELGAEIAVVE-----DYSE 73

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +I    V++   AL  +A            +I IT + GKTTT  M+   L   K+   
Sbjct: 74  ENIKQIRVENSRIALADMARNFYEDPSKDMNVIGITATNGKTTTAFMVNSILEEDKRNTG 133

Query: 139 CIGSYNNHI-----------GVPLTLARMPVDV-DFGIFE--LGMSHLGEIRFLTHLVRP 184
            IG+                   LTL     D+ D G+ +  + +S   +  +    +  
Sbjct: 134 IIGTVLTRYADVMIPSVLTTPESLTLQSYFRDMKDKGVTDVTMEVSSSAQELYRNKNIDF 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I     +   H+      E     K+ +    ++     LN DD     L+ K+ A   
Sbjct: 194 DIVTFNNLGREHIDQHGSFENYFRFKSRLIRHAKEDALAILNADDEKIYSLRDKTKA--- 250

Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK-----------SMEVVHHGIGYHM 292
             + SF  +S +A+F ++     S +     ++                 +    +GY  
Sbjct: 251 -QVLSFSLESNDAEFGIQDLDLSSGKGKFTFKINRDIKIKDFILEKSEFNIELGSVGYSS 309

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L+ + I   L  D +T  +AL  F   E   +R+    ++ F  L  + + AN  +
Sbjct: 310 VMNSLVAIIIGLCLKIDTETIKRALKNFKGVE---RRFELIFDEEFKIL--DDHFANEKN 364

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           + A +  L ++         A+       G+     + ++ E L  
Sbjct: 365 IDATMETLKEMDYKNLNILYAI------RGKRGVEVNREITERLVK 404


>gi|212635043|ref|YP_002311568.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella piezotolerans
           WP3]
 gi|226711874|sp|B8CNL2|MURC_SHEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212556527|gb|ACJ28981.1| UDP-N-acetylmuramate-alanine ligase [Shewanella piezotolerans WP3]
          Length = 489

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 149/403 (36%), Gaps = 38/403 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +   L IPV    ++L  L +             +A+ G+ GKTTT  ++
Sbjct: 89  AISADNPELMAAKELRIPVVQRAEMLAELMRYR---------HGVAVAGTHGKTTTTSLI 139

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   +           +    T AR+     + I E   S    +      ++P +
Sbjct: 140 ASVYGQADRDP--TFVIGGLLNSAGTNARL-GHSRYLIAEADESDASFLH-----LQPMV 191

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +V+T I   H+  +   IE++ +   +    L   G   +  DD     L  +      +
Sbjct: 192 SVVTNIEADHMDTYGGDIEKLKNTFVDFIHNLPFYGVAVVCIDDPIVRELLPRFS----R 247

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G   +AD Q   + Q    S   V+  G   + +  +  G H   N L  + + S
Sbjct: 248 KVVTYGFGDDADVQAVGFTQTGYSSQFTVRRSGVADLNLSVNLPGEHNVLNALAAIAVAS 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +  IKAL+ F     R ++            + + Y  +P+ + A I    Q  
Sbjct: 308 EDDIEDEAIIKALAEFQGIGRRFQQVGDFETAKGEVKLVDDYGHHPSEVAATIKAARQGW 367

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALP 419
           P    R + +          ++  + D  EVLS  +   +  V+ +G   +   D  AL 
Sbjct: 368 PE--RRLVMIY--QPHRYSRTRDLYEDFVEVLSQVDCLLLLDVYAAGEAAIPGADSRALC 423

Query: 420 RSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           RSI V       +  + + L   +   L +GD+++ + + + G
Sbjct: 424 RSIRVRGQLEPVFVASTEQLQTVLPEILQNGDLLLTQGAGNIG 466


>gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200]
          Length = 488

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 150/403 (37%), Gaps = 38/403 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +   L +P+    ++L  L +             +AI G+ GKTTT  ++
Sbjct: 88  AINAENPEIIAAKELRVPIVRRAEMLAELMRYR---------HGVAIAGTHGKTTTTSLI 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   +           +    T AR+     + I E   S    +      ++P +
Sbjct: 139 ASVYGQAGRDP--TFVIGGLLNSAGTNARLGTS-RYLIAEADESDASFLH-----LQPMV 190

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +V+T I   H+  +    E++ S   +    L   G   +  DD     +  +      +
Sbjct: 191 SVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRI----GR 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S +AD Q   + Q   Q    V+ +GK  ++++ +  G H   N L  + + +
Sbjct: 247 HLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVAT 306

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D    I+AL+ F     R +            ++ + Y  +P+ + A I       
Sbjct: 307 EDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGW 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALP 419
           P     +  V+         ++  + D  EVLS  +   +  V+ +G   +   D  AL 
Sbjct: 367 PE----KRLVMAYQPHRYTRTRDLYEDFIEVLSQVDCLLLLDVYSAGEAPITGADGRALC 422

Query: 420 RSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           RSI +       +  + D L   +   L +GD+++ + + + G
Sbjct: 423 RSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGNIG 465


>gi|25008816|sp|Q9K0Y1|MURC_NEIMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|7225646|gb|AAF40861.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis MC58]
 gi|325140938|gb|EGC63445.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           CU385]
 gi|325205492|gb|ADZ00945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M04-240196]
          Length = 469

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 157/437 (35%), Gaps = 54/437 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H +G D ++      +  V      V +     IPV     +L  L +           
Sbjct: 61  EHVNGADVVVT-----STAVKKENPEVVAALEQQIPVIPRALMLAELMRFRDG------- 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  +    L +     T+   G  N       T AR+    ++ + E
Sbjct: 109 --IAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLN----AAGTNARLGKG-EYIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +        P ++V+T I   H+  +   +E++  A  +    +   G  FL
Sbjct: 162 ADESDASFLHLT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFL 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             D      +  K      K   ++G    AD      +    Q    V +Q K     S
Sbjct: 217 CIDSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGS 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EVV +  G H   N L  +G+   + A V+   K L  F     R ++Y    L  G  
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A        +      +  VL         ++    D  +VL+  
Sbjct: 333 ALLVDDYGHHPVEMAAT----LAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 449 VKSSNSCGFYRLINLLL 465
              + S    R+   LL
Sbjct: 449 NMGAGSIN--RVPAALL 463


>gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
 gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
          Length = 493

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 155/413 (37%), Gaps = 42/413 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+ ++   +       +  ++ DSR +     F  I G   DGH+F+   ++K
Sbjct: 1   MMKLTKLLERLEYKVVQGNDDIEITELTNDSRRVCAGSVFVCISGAVVDGHEFVKEVLEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA  V+V  ++ A      + V  V+D     AL   A       +  +I ITG+ GKTT
Sbjct: 61  GAKAVIVEKEVKAPE---HVTVIKVEDTRYALALASAAYFGYPAEQLKVIGITGTKGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFEL 167
           T  M+   L  +      IG+    IG  +  A              R  VD       +
Sbjct: 118 TTYMVKSILEGVGHKVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKMVDAGCDAVVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    K  +F+          
Sbjct: 178 EVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFKQCR---IGIA 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSME 282
           N DD +FE +   +       I +FG ++ AD +    K  S   ++ V          +
Sbjct: 235 NVDDPYFEDVFRGATC----QIETFGFAQKADLRAADTKLVSRPGYLGVSYHVSGLMDFD 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +       V+   KAL      + +G+     +++ F  +I
Sbjct: 291 VEIDIPGTFSVYNSLTAIAVCRHFDVPVEMIKKALK---VAKVKGRIEMVKVSEDFTLMI 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           D  Y  N  S+++ ++ L +  P    R + + G     G  +++   ++ EV
Sbjct: 348 D--YAHNAMSLESLLTTLKEYHPK---RLVCLFGC---GGNRAKARRYEMGEV 392


>gi|320352822|ref|YP_004194161.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121324|gb|ADW16870.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 461

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 157/434 (36%), Gaps = 49/434 (11%)

Query: 53  GHDFILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA +VV       +   V +     +PV    ++L  L +L        
Sbjct: 56  GHD---AAWVAGADVVVTSTAIAADNPEVVAAKEAHVPVVQRAEMLAELMRLKKYG---- 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ GS GKT+T  M+   L+            +  + V   +  +  +   G  E
Sbjct: 109 ----IAVAGSHGKTSTTSMVAAILAEAG--------LDPTVVVGGKVHGLGSNARLGEGE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             ++   E       + P I V+T I   HL  +  I+ I     E    L   G   + 
Sbjct: 157 FLVAEADESDGSFLKLSPVIEVVTNIDLEHLDYYRDIDHIKDMFLEFINRLPFYGVAVVC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVH 285
            D+     L  +      K I ++G ++ AD Q  K    +  S   V+ + + +  +  
Sbjct: 217 IDNDHIAQLLPRIQ----KRIATYGLTEQADLQAVKIISGNGTSQYTVRSRKEELGVIRL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H+  N L  + +   L  D     +AL  F    G  +R +         ++D+ 
Sbjct: 273 NRPGKHLIYNSLAAVSVGLELEIDFSVIARALENFQ---GVQRRLQIKGEAAGVLVVDD- 328

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-------ELSQSFHI-DLAEVLS 397
           Y  +P  ++A +  + +       RR+ V               E + +F   D+  +  
Sbjct: 329 YGHHPTEIRATLDAVRE---GWPDRRVVVAFQPHRYSRTKGLFAEFTTAFRRADVLVLTD 385

Query: 398 LYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y      + G     L++A+ +      H+   +      +   L  GD+++   + + 
Sbjct: 386 IYAAGESPIEGVTSERLQEAIKQRGQRQAHFIPQLVEQPQVLMPLLQPGDLLLTLGAGNI 445

Query: 456 --GFYRLINLLLEE 467
                ++++LL E 
Sbjct: 446 VRAGEQVLDLLKEH 459


>gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
 gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
          Length = 483

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 161/458 (35%), Gaps = 47/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81
            G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +        
Sbjct: 17  DGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYIEKAVASGAAAVVYEPNNLPQGITLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +IP   +  +   L ++A            +  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  AIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136

Query: 140 IGSYNN-----------HIGVPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                   L L R+        +     E+    L + R     + 
Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHR--VDSLE 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A+ T +   HL     ++   +AK+ +FE   +     +N DD   +L+        
Sbjct: 195 FSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER-SELQWAIINQDDDCQDLMSNVLKTHV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   ++G  +N D +  +W      + +EV+       +    +G     N L     +
Sbjct: 254 KK--VTYGMHQNCDVKAIQWNMDITGTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSL 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +  ++ ++      GR +     + Q  + L+D  Y   P +++  +  L QI
Sbjct: 312 LASGYNPEKVVQIMAELKAAPGRME----IVAQSPYVLVD--YAHTPDALENVLITLKQI 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVL--ALK 415
               +GR   V G     G+  ++    + +  S+Y  + V  S         ++   + 
Sbjct: 366 K---KGRLWVVFGC---GGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIA 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +P S  V      +    +        D++++  K 
Sbjct: 420 CGMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457


>gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
          Length = 516

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 171/501 (34%), Gaps = 68/501 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF----- 56
               +LL  I   S+ I        V G++ +S +  P + F  + G   DG DF     
Sbjct: 1   MKLKELLATIPNISLSISHPALDSQVKGLATNSHACQPGDLFLGMPGTRVDGGDFWQGAI 60

Query: 57  -------------ILHAVQKGAGLVVVNTDMVASIG--SLSIP-VFGVDDVLGALNKLA- 99
                           A+++G+G         A        +P +  V D+  A   +A 
Sbjct: 61  ASGAIAALVSTQAAEKALEQGSGGAGERGSGGAGERGSEGEVPCIIPVVDMTQACAHIAT 120

Query: 100 -VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---- 154
                  ++  ++ +TG+ GKTTT  ++   LS  +   A  G+           A    
Sbjct: 121 AFYGYPGNQLKLVGVTGTNGKTTTTHLIEFLLSKAELPTALFGTLYTRWPGFQETAIHTT 180

Query: 155 ------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                        +     FGI E+    L + R L       +AV T +   HL     
Sbjct: 181 PFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVL--GCPFEVAVFTNLTQDHLDYHRD 238

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR 261
           +E+  +AKA +F      G   +N DD++   +     +L  + ++S+  +   AD    
Sbjct: 239 MEDYFNAKALLFSSNYLKGRAIVNADDAYGRRI---IDSLNSEQVWSYSTNDSKADLWAS 295

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             K         +       +     +G +   N+L  +G    L  ++   +  L  F 
Sbjct: 296 DLKYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFP 355

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR ++ + +  Q    ++D  Y   P S++   ++L    P   GR I V G     
Sbjct: 356 GVPGRVEKVQISPVQDISVIVD--YAHTPDSLE---NLLKASRPFIPGRMICVFGC---G 407

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG---------FHVLALKDALPRSIHVHYSETMDG 432
           G+  ++    + ++++      V  S               L    P    +   +    
Sbjct: 408 GDRDRTKRPKMGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDRAQA 467

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
           +   I  +   GD V++  K 
Sbjct: 468 IRTAILEA-KPGDGVLIAGKG 487


>gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase
           [Aromatoleum aromaticum EbN1]
 gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase
           [Aromatoleum aromaticum EbN1]
          Length = 502

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 162/456 (35%), Gaps = 41/456 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI+ DSR + P E F A  G   DG  ++  A+++GA  V+ +      + +LS+P   
Sbjct: 21  HGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDSDGMRLEALSVPALP 80

Query: 88  VD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V     LG      +     SK  +  +TG+ GKTT  + L  AL+ +      IG+   
Sbjct: 81  VSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIGTLGC 140

Query: 146 HIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                L               +    V    G   + +S +G  +   + V   +AV T 
Sbjct: 141 GFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVAVFTN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL   S +E  A AKA +F+ L   G   +N+DD F      +  A G+  I    
Sbjct: 201 LTRDHLDYHSSMESYAVAKARLFD-LPGIGAAVINFDDDFGLAQARRLAASGMPVIGYTR 259

Query: 252 KSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + AD             +         +   G    V    +      N++  +G + 
Sbjct: 260 FVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMAVIGSLL 319

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    +D  ++++S   P  GR +            L+   Y  +P ++   +  +   +
Sbjct: 320 VRDVPMDDIVRSVSRLTPPAGRMQLV----GGVGEPLVVIDYAHSPDALAQVLEAVRSTA 375

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALP 419
               GR + V G   +     +    D+A  L+      V ++         L + DA+ 
Sbjct: 376 QGRGGRLVCVFGCGGDRDAGKRPMMGDVARALA----DRVIVTSDNPRSEDPLKIIDAIV 431

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           R    +                     DV+V+  K 
Sbjct: 432 RGAGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKG 467


>gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
 gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
          Length = 499

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 153/466 (32%), Gaps = 61/466 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           +    G S+DSR +A  + F A+    +        F   A+  GA  ++  T++  +  
Sbjct: 19  KQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGVANE 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135
            +        DV   + +                IIA+TG+ GKTT   ++   +SS ++
Sbjct: 77  WVR------SDVRQRMGEWQERYLQHIDPVVPVRIIAVTGTNGKTTISRLVAELISSQQQ 130

Query: 136 TYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLT 179
             A +G+  N I   LT +                       F   E     L + R   
Sbjct: 131 RCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNG 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAK 238
             +   IAV + ++  HL     +E  A AKA +F          +N DD    L+  A 
Sbjct: 191 CAIE--IAVYSNLSRDHLDYHGTLEAYAEAKALLFRF-SSLKVAVINLDDEHAALMINAA 247

Query: 239 SHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   I ++  ++N AD+ +         +   +     S  V    +G+   +N++
Sbjct: 248 KQNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGHFNVENLV 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L        ++   +  +       GR +  R         L    Y   P ++   I
Sbjct: 308 AALIATEQAGFNLKALVAFVPELIGAPGRMQVIR-----DGERLFVVDYAHTPDAL---I 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
            VL  +  H   +  AV G   +     +          +L   + V L+          
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQ----AALDGANPVILTSDNPRTEDPE 415

Query: 413 ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   + + I      +H          F+      GD+VV+  K 
Sbjct: 416 QIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
 gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
          Length = 474

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 163/466 (34%), Gaps = 67/466 (14%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           P   V GI+ DSR + P   F AI+G      P  +GHDFI  A+ +GA  +V   D+  
Sbjct: 13  PTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVGTQDL-- 70

Query: 77  SIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
               L +P   V D   AL  LA            ++ ITG+ GKTT   +    L    
Sbjct: 71  ---ELPVPYLKVADPRSALADLAAAFWGHPAKMLQLVGITGTKGKTTVTVLAHHLLQFAA 127

Query: 135 KTYACIGSYNNHI-----------------GVPLTLAR-MPVDVDFGIFELGMSHLGEIR 176
                I +    +                  V   LAR +       + E+    L    
Sbjct: 128 PPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVLEVSSHALAL-- 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   + V T ++  HL     +E   +AK  +   L ++    LN +D ++  L 
Sbjct: 186 ERVRGLEYEVGVWTNLSEDHLDFHGSMENYFAAKQTL---LRRSRFGVLNREDPYYPQLP 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +H       +S+G     D+Q     + +      V+    + +V    IG   A N 
Sbjct: 243 GLTH-------WSYGM--GGDWQAENLLETAGGLHFRVRSPLGAFKVSLPMIGKFNALNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +   + L   +      L  F    GR +  +       F +I + +    +S++AA
Sbjct: 294 LAAMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQATP----FRVIVD-FAHTESSVRAA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L    P   GR + V+G   E G   ++    +           V+    H     +
Sbjct: 349 LETLR---PTTRGRLVIVVGAAGERGAERRT---GIGRAAGELADLAVFTEEDHRSENLE 402

Query: 417 AL-------PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+        +++   Y+          +  +    GD +++  K 
Sbjct: 403 AILQTMAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKG 448


>gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
 gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
          Length = 480

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 169/488 (34%), Gaps = 71/488 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              I+ DSR + P  AF AI G   DGH+FI  A+ KGA ++    ++ +  G   IP+ 
Sbjct: 12  FTDITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEIKSRSG---IPIV 68

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V D    L KLA         K  +I +TG+ GKTTT  ++   L+   K    IG+  
Sbjct: 69  RVKDSRSILGKLAAEFYNYPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLIGTVK 128

Query: 144 ----------NNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                     N     P+TL +   ++     ++   E+    +   R      +  I V
Sbjct: 129 VDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRIT--GSQFAIKV 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T I   H    S   +    K    E       + LN DD +       +     K   
Sbjct: 187 GTNITVDHFDLHSDFSDYVQVKKSFLEDKNPHTLVLLNNDDHYLSSFGNIA-----KNQI 241

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQL-------QGKSM-----EVVHHGIGYHMAQNM 296
            +G + N D            +     L       QG  +      +     G H   N 
Sbjct: 242 GYGITTNTDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVPINLKIPGEHNIYNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ + I        +        F    G  +R++   N+ F  +ID+    NP S  A 
Sbjct: 302 LVAITIGLYYGLTPEKIQDFFGQF---RGIWRRFQVIYNKDF-AIIDDC-AHNPGSYGAV 356

Query: 357 ISVLSQISPHG-------EGRRIAVL--GDMCEMGELSQSFHI---------DLAEVLSL 398
              +SQ+            G R A +  G+   +G+  + FH          D+ + +  
Sbjct: 357 FKTVSQLKYKNLLIVNAIRGNRGAQINKGNAETIGKWLKKFHNYYLLTTNCNDVVKPIDK 416

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +           + L+     +I   + + +      +   +   D++++  ++     
Sbjct: 417 VSPEE------EKVFLQALDKNNIKYSHLDQLKPALKNVLDKVTPDDIILLLGAH--AMD 468

Query: 459 RLINLLLE 466
              +++LE
Sbjct: 469 EAGDMILE 476


>gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
 gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
          Length = 484

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 144/450 (32%), Gaps = 44/450 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++ I++DSR++AP   F A+ G   DG  FI  A++               +      V 
Sbjct: 23  ISDITLDSRAVAPGAVFVAMPGGESDGRGFIDDALR---AGAAAVLAEADGLAQQHPKVI 79

Query: 87  GVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V  +      +A        ++  ++A+TG+ GKT+  ++    L  +      IG+  
Sbjct: 80  AVPALRSRCGDIARRGFGDVSARMALVAVTGTNGKTSIADITAQLLRGLGVKTGTIGTLG 139

Query: 145 NH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +                  +  TLA    +    +     SH      L  L      + 
Sbjct: 140 SRTNTVAATAVNTTPDVFTLHRTLAAWHAEDIDHVVLEASSHALSQERLAGLT-LRTGIF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL          +AK  +F           N DD     ++  +    +    S
Sbjct: 199 TNLSRDHLDYHEDERAYLAAKLRLFSDYPLQ-YAIYNADDPMASEVRTVASCPTLGISMS 257

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              S  AD    +++       + +     +        G   A N++  +   + L  D
Sbjct: 258 ---SAEADVFA-QFEVLQSGLNITLHAPYGTASAETPLSGTFNAFNVVAAVMAATTLGYD 313

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  +  L       GR +R   A  Q    ++D  Y   P ++  AI  L    P   G
Sbjct: 314 FEQVMALLPTLKTVPGRMQR--VASPQELAVVVD--YAHTPEALAVAIEALR---PGCTG 366

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH-- 423
               V G     G+  +     +  + +      V  S          + D + + I   
Sbjct: 367 ELWLVFGC---GGDRDRGKRAQMGRIAATLADRVVVTSDNPRSEAPERIIDDILKGIDGP 423

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               E   G  +    +   GDVV++  K 
Sbjct: 424 AVVVEDRRGAIMHALGAARPGDVVLIAGKG 453


>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 499

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/464 (20%), Positives = 171/464 (36%), Gaps = 44/464 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   ++   I       V GI+ID R I   + F A+ G H DG DF   AV++GA
Sbjct: 30  TLDALGALVEHARIVGDRATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGA 89

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDD--VLGALNK--LAVAARLRSKATIIAITGSVGKTT 121
             V+          ++ +P   V    +  A+ +    +     S  ++I +TG+ GKTT
Sbjct: 90  VAVL----TAGQPVAVGVPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTT 145

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVD-----VDFGIFELGMSHLGE 174
           T  +++  L  + +    +G+  + +  P    LAR   +       +   E+    +  
Sbjct: 146 TVSVVSQLLERLGEGVGVLGTLWSRLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAM 205

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R     +   + V T ++  HL     +E+  +AKA +FE  E+T    +N DD +   
Sbjct: 206 ERI--EGLHVRVGVFTNLSQDHLDFHGSMEDYFAAKARLFEP-ERTAIGVINVDDPWGAR 262

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L A      +    S          +   +  +       +  G+        +G H  +
Sbjct: 263 LAASVRVPVVPVSIS---------AVTDIEIDAAGIRF--RRNGRWY--RSRLVGEHNLR 309

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ + ++  +  D D     L       GR +R       G   L+   Y  +P ++ 
Sbjct: 310 NILLAVSVLEQVGFDPDLLRGVLGEVESPRGRMQRIL-----GPRGLVVVDYAHSPDALA 364

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV 411
           A +   +++     GR + V G   E  +  +     +AE L+   I    +        
Sbjct: 365 AVLRA-ARLLVGPRGRLLVVFGAGGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDPAA 423

Query: 412 LA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +A  +         V              + +  GDV+VV  K 
Sbjct: 424 IAAQIVAGWRDRRGVRVVLDRRAAIEEAVAMMAPGDVLVVAGKG 467


>gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
 gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
          Length = 482

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 147/405 (36%), Gaps = 43/405 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V      V +     IP+    ++L  L +             IA+ G+ GKTTT  +L
Sbjct: 86  AVNEENPEVKAAREKRIPIVRRAEMLAELMRYR---------HGIAVAGTHGKTTTTSLL 136

Query: 127 TIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               +   +  T+   G  N+      T A+M     + + E   S    +      ++P
Sbjct: 137 ASIFAEGELDPTFVIGGRLNS----AGTNAKMGTS-RYLVAEADESDASFLH-----LQP 186

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +A++T I   H+  + +    +     E    L   G   +  DD     +  +     
Sbjct: 187 MVAIVTNIDADHMETYENDFSRLKKTFVEFLHNLPFYGLAVMCVDDPVVCEILPEIS--- 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLG 301
            + + ++G S++AD++    +Q    +   V+       ++V  +  G+H   N L T+ 
Sbjct: 244 -RPVLTYGVSEDADYRAENIRQEGMCTRFTVKRPEGFADLDVSLNMPGHHNMLNALATIA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + S      +    AL  F     R +            ++ + Y  +P  + A +  + 
Sbjct: 303 VASDEGISDEAICSALEKFEGVGRRFQVLGDVSVTDGTAMLVDDYGHHPREVNAVVKAIR 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD-- 416
           +  P    R + +          ++  + D  EVLS  ++     V+ +G   +A  D  
Sbjct: 363 EGWPEK--RLVMIY--QPHRYSRTRDLYEDFVEVLSEVDVLLLLEVYAAGEEPVAGADSR 418

Query: 417 ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +L RSI         +    D +   ++  L  GD+++ + +   
Sbjct: 419 SLCRSIRQRGRLDPVFVSDKDSVADVLKDILQPGDLLLTQGAGDI 463


>gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 518

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 163/485 (33%), Gaps = 56/485 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  F + L  +    +   P+   V  +  DSR       F  ++G   D H F+   + 
Sbjct: 22  MAKFSEWLDGLDYELLHGDPEKVEVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVIA 81

Query: 63  KGAGLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITG 115
           +G   +VV  +       L      I V  V     AL KL+ A       +  +IA+TG
Sbjct: 82  EGTEAIVVEEESSMLPVDLREIYEGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVTG 141

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIG--------------SYNNHIGVPLTLARMPVDVD 161
           + GKTTT  M+   L S  ++   IG              +          L R   D  
Sbjct: 142 TKGKTTTAHMIRSILESAGESCGLIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADRG 201

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
            G   +  S  G   + T  +     + T I P H+        EE    K+ IF    +
Sbjct: 202 CGYVVMEASSQGFKLYRTDAIDFDYGIFTNIEPDHIGPNEHKDFEEYKYYKSRIF---RQ 258

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQ 275
           +    +N D  + E L A +       +Y FG  K+ADF     +  +      S  +V 
Sbjct: 259 SRVGLINRDSPYAEELIAGAKC----RMYCFGIDKSADFMAEGIQAVNSPDFVGSEFQV- 313

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +    ++V  +  G +   N +  + + S++       +KAL +         R   A  
Sbjct: 314 IGMAKLDVRLNLPGKYNVYNAMAAISVCSLIGIRNSAILKALRLIRVNG----RMELAFK 369

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               ++I + Y  N   M+  +  L +  P    R + V G     G  S+     + E 
Sbjct: 370 NDTMSVIVD-YAHNAMGMENLLETLREYHPK---RLVVVFGC---GGNRSKERRYGMGET 422

Query: 396 LSL-YNISHVWLSGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +   + S +          +D +        P                +   +   GD+
Sbjct: 423 AARLADFSVLTADNSRFERTEDIISDIKSRLVPLGGRYAEIPDRREAIEYAMKNAEKGDI 482

Query: 447 VVVKS 451
           + V  
Sbjct: 483 IAVIG 487


>gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 484

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 163/453 (35%), Gaps = 48/453 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +   S +S  +  Q+ F   +G  +D H +I  A+  GA  ++    +     S S+PVF
Sbjct: 18  IRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAITNGAVAIIATKPI-----SASVPVF 72

Query: 87  GVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                  +L  +         K   I ITG+ GKTT    L   L + +++ A IG+   
Sbjct: 73  VTGSYYQSLLLIKAFYQYPHKKIRHIGITGTNGKTTVAHGLNQVLKTKRQS-AYIGTLGV 131

Query: 146 HIGVP-----------LTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPHIAVI 189
                           +TL  +  D+        + EL    L + R     V   + VI
Sbjct: 132 EYAGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMELSSHALVQDR--AGFVPLSVGVI 189

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL     ++    AK +I + ++  GT  +N DD    +  A   A     + +
Sbjct: 190 TNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAVINLDDHHANV--AIERACSRVNVLT 247

Query: 250 FGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           F  +   AD  +         +   +  QG    V          +N L     +  L  
Sbjct: 248 FSMNNSEADLYVEDLNVEPFGATFVLNNQGNKERVFSQLPFLFNVENTLAMAATLLALNW 307

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +     AL+        G+    +L+ G   L+D  Y  N   + A    +   S    
Sbjct: 308 SLADIANALNSV--VAPDGRSKYLSLDNGALALVD--YAHNFDGLTALYQGIQSQSAK-- 361

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            R I V+G   +    +     D+ ++ + ++   ++ S   +  +++ + R++    S 
Sbjct: 362 -RVITVVGVTGDRIRDA----ADIGKLCATHSDVVIFTSDNPLGEMQEDIFRALTSQVSP 416

Query: 429 TM-----D--GLFLFIQSSLVDGDVVVV--KSS 452
           T+     D        +     GD+++V  K S
Sbjct: 417 TLCYEISDRYEAIQLAKQLSRGGDLILVCGKGS 449


>gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185]
 gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195]
 gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223]
 gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185]
 gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195]
 gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223]
 gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678]
          Length = 488

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 150/399 (37%), Gaps = 39/399 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +   L IP+    ++L  L +             +AI G+ GKTTT  ++        + 
Sbjct: 98  AAKELRIPIVRRAEMLAELMRYR---------HGVAIAGTHGKTTTTSLIASVYGQAGRD 148

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                     +    T AR+     + I E   S    +      ++P ++V+T I   H
Sbjct: 149 P--TFVIGGLLNSAGTNARLGTS-RYLIAEADESDASFLH-----LQPMVSVVTNIEADH 200

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E++ S   +    L   G   +  DD+    +  +      + + ++G S +
Sbjct: 201 MDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRI----GRQLVTYGFSDD 256

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD Q   + Q   Q    V+ +GK  +++V +  G H   N L  + + +    D     
Sbjct: 257 ADVQALNFSQQGHQCRFTVRRKGKADLDLVLNLPGQHNVLNALAAIAVATEDEIDDSAIT 316

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +AL  F     R +            ++ + Y  +P+ + A I       P     +  V
Sbjct: 317 QALVEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPD----KRLV 372

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH---- 425
           +         ++  + D  EVLS  +   +  V+ +G   +   D  AL RSI +     
Sbjct: 373 MAYQPHRYTRTRDLYEDFVEVLSQVDCLLLLDVYSAGEAPITGADGRALCRSIRLRGQLD 432

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLI 461
             +  + D L   +   L +GD+++ + + + G   RL+
Sbjct: 433 PIFIASPDQLAEVLPDVLQEGDLLLTQGAGNIGALSRLL 471


>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
 gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
          Length = 498

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 164/484 (33%), Gaps = 67/484 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILH 59
           L+T HD+   ++             G  +DSR + P + F A+    +        F   
Sbjct: 8   LYTPHDVADWMK---------QSFQGFELDSRKVKPGQIFIALTSLSQPEKTV--QFAQK 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITG 115
           A+++GA  V+  T+   S      P   V DV   + +        ++      I+A+TG
Sbjct: 57  ALEQGALAVISETEPDVS------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTG 110

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VD 159
           + GKTT   ++   +    K  A +G+  N I   L  +                     
Sbjct: 111 TNGKTTISRLVAEFIMLQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAG 170

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +F   E     L + R   +     IA  + ++  HL     ++  A AK+ +F   E 
Sbjct: 171 AEFASIEASSHGLEQGRL--NGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFRF-ES 227

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD   +++   +     +  I ++  ++ AD+Q++  +     +  +++   
Sbjct: 228 LKVAVINIDDEHAQIMLDAAKNNPAQPKILTYSTTQKADYQVQDIQYSISGATFKLKTAS 287

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V    +G+   +N++ +L +      ++++ I  +       GR +  R       
Sbjct: 288 AEYIVNSPLLGHFNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRMQVLR-----DG 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L    Y   P ++   +  L +   H      AV G   +     +      A  L  
Sbjct: 343 ERLFVVDYAHTPDALTQVLVTLKR---HVSQNLWAVFGCGGDRDRGKRPLMTQAA--LDG 397

Query: 399 YNISHVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV 449
            +I  V  S          +   +   I       H          F       GD+VV+
Sbjct: 398 SDI-AVLTSDNPRTEDPAQIFADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVI 456

Query: 450 --KS 451
             K 
Sbjct: 457 AGKG 460


>gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetospirillum magneticum AMB-1]
 gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 478

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 161/449 (35%), Gaps = 32/449 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR++ P   F A+ G   DG  FI  A+  GA  V+        +    +
Sbjct: 9   DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAAGAVAVLAPEGSRPDLPPEVV 68

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V    +       +A A        + A+TG+ GKT+T E     ++ +    A IG+ 
Sbjct: 69  LVTD-ANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAAAAIGTL 127

Query: 144 NNHIGV---------------PLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                                   LAR+    V     E     L + R     VR   A
Sbjct: 128 GITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRL--DGVRLMAA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   HL   + +   A AK  +F   L +  T  +N D              GI T
Sbjct: 186 AFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI-T 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  FG++   D +L + +  +    +++++ G+++ +     G   A N L  LG+    
Sbjct: 245 VLGFGRTAR-DLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALAC 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            AD   A++AL       GR ++     N      I   Y   P +++   +VL  + PH
Sbjct: 304 GADPVAALEALGHLDGVPGRLQQVASRANGAP---IYVDYAHTPDALE---TVLKALRPH 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              R +AV G   +     +     +   +     ++          A++ A+  +    
Sbjct: 358 AARRLVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAG 417

Query: 426 Y-SETMDGLFLFIQSSLVDGDVVVV--KS 451
                  G      S L  GDV+V+  K 
Sbjct: 418 IEIADRRGAIRAAVSGLQKGDVLVIAGKG 446


>gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
 gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
          Length = 486

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 155/459 (33%), Gaps = 44/459 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +  +    + GI+ DSR  AP   F A+ G   DG  ++  A             +   
Sbjct: 18  LLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKDA-----VAKGAVAVVSGH 72

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V D    L+  A     +   T++A+TG+ GKT+    +    +      
Sbjct: 73  AVDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAVTGTAGKTSVASFVRQIWAFAGHAA 132

Query: 138 ACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHL 181
           A IG+             +                   V     E     L + R     
Sbjct: 133 AQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAAEGVTHAAMEASSHGLDQRRL--DG 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSH 240
           V+   A  T +   H+     IE+  +AK  +F+ L + G    +  DD + +    ++ 
Sbjct: 191 VKLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDK-AIRAA 249

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + + G+  +    L++ +    +  +EV   G   EV     G     N L+  
Sbjct: 250 ADAGLNVRTVGRKGD-YLTLKRVEHFRHKQLIEVHHDGVIHEVDIPLAGDFQVANALVAA 308

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+         TA+KAL       G   R           L    Y   P +++   +VL
Sbjct: 309 GLAMSTGVSAATAMKALEKLIGAAG---RLELVGQTKNGALAYVDYAHKPDALE---NVL 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + + P   GR I V G   +  +  +    ++A  LS      V ++  +  +   A  R
Sbjct: 363 TSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLS----DIVIVTDDNPRSEDAATIR 418

Query: 421 SIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           S  +  +                 S L +GD ++V  K 
Sbjct: 419 SEVMAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKG 457


>gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 497

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 152/436 (34%), Gaps = 50/436 (11%)

Query: 56  FILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VV+      +   V +     IPV     +L  L +          
Sbjct: 88  FIGHQAENIVGASVVVISSAIHGDNPEVMAAKDARIPVIQRAQMLAELMRFR-------- 139

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +            N  +              + I E 
Sbjct: 140 -HGIAVAGTHGKTTTTAMVSMIYAEAGLD---PTFVNGGLVKSAGTNAHLGCSRYLIAEA 195

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P I+++T I P H+       +E+          L   G   L 
Sbjct: 196 DESDASFLH-----LQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGLAVLC 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD     L      L  + + ++G S+NAD+++  ++Q   Q    V    G+ ++V+ 
Sbjct: 251 ADDEVLMELV----PLVGRQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERIDVLL 306

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        D  + AL+ F     R  +    +      ++ + 
Sbjct: 307 NVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDD 366

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    Q            PH   R   +  D  ++        +D+  +
Sbjct: 367 YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-----VDVLIM 421

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    AL  ++     V        + L   +   + DGD+++ + + 
Sbjct: 422 LDVYPAGEAPIVGADSKALCRSIRNLGKVDPILVSDTEQLGEVLDQIIQDGDLILAQGAG 481

Query: 454 SC-GFYR-LINLLLEE 467
           S     R L+    +E
Sbjct: 482 SVSKLSRQLVECWTKE 497


>gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
 gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
          Length = 480

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 149/402 (37%), Gaps = 42/402 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V      S+PV    ++L  L K+ V          IA++GS GKTTT  M+
Sbjct: 90  AVRKDNPEVLEAHRRSVPVIPRAEMLAELLKMKV---------SIAVSGSHGKTTTTSMI 140

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              ++S        G  +  + +   L  +  +   G  E  ++   E       + P +
Sbjct: 141 ATVMAS--------GGLDPTMVIGGKLGSIGSNARMGHGEFIVAEADESDGSFLKLSPSL 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   HL  + GIE+I  A  +    +   G+  L  DD   + + +       + 
Sbjct: 193 AVITNIDREHLDFYRGIEDIKDAFLQFANIVPFYGSAVLCLDDPHIKTILSDIK----RK 248

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             ++G    AD++ ++ +     +  E+  + + +  V     G     N L T+ +   
Sbjct: 249 TITYGMEPAADYRAQELRFNGAVTEYELYYRTECLGSVTLSVPGMFNVYNSLATVAVARE 308

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--- 362
           L        +         G G+R          T++D+ Y  +P  + A ++   Q   
Sbjct: 309 LDMTFPDIQQG---LKSYVGVGRRLEVKGKIAGVTVVDD-YGHHPTEISATLAAARQVWK 364

Query: 363 ------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                   PH   R  A+  +   +G  +++   DL  V  +Y  S   + G    AL D
Sbjct: 365 NRMIVVFQPHRYTRTQALFREF--LGAFTEA---DLLIVTDIYPASEDPIEGVTAEALCD 419

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +       V Y      +  ++ + +  GD V+ + + S  
Sbjct: 420 GIRSLTRREVRYIPNFSDITDYLMTVVQPGDTVITQGAGSVN 461


>gi|254491328|ref|ZP_05104508.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxidans
           DMS010]
 gi|224463457|gb|EEF79726.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxydans
           DMS010]
          Length = 473

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 158/406 (38%), Gaps = 45/406 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IK 134
           +     IPV    ++L  L + +           IA+ G+ GKTTT  ++   LS   + 
Sbjct: 90  AAREQRIPVVPRAEMLAELMRFSYG---------IAVAGTHGKTTTTSLIAALLSEGELD 140

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T+   G  N+      + AR+     + + E   S    +      ++P IAV+T I  
Sbjct: 141 PTFVIGGRLNS----AGSNARLGTG-RYLVAEADESDASFL-----YLQPMIAVVTNIDE 190

Query: 195 AHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            H++ +     ++ +   E    L   G   +  DD   + L A+      +   ++G+ 
Sbjct: 191 DHMATYEGDFGKLKATFIEFLHHLPFYGLAVMCLDDPVVKELLAEV----TRPFITYGQD 246

Query: 254 KNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           ++AD+QL    Q   QS+  V  +  G+   +  +  G H A N    + +   L  ++ 
Sbjct: 247 EDADYQLVDLTQHQGQSFFTVVEKHSGERYPITLNMPGLHNALNATAAMAVARNLAVNIA 306

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL  F     R         +G    + + Y  +P  + A    L+         R
Sbjct: 307 ACQQALLKFDGIGRRFNLLGQVDAEGGKATLIDDYGHHPTEIAA---TLAATRGGWPDNR 363

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH- 425
           + V+         ++    D A VLS  ++     V+ +G   +A  DA  L R+I +  
Sbjct: 364 VVVVFQ-PHRYSRTRDLFEDFAHVLSAVDVLVMLEVYPAGESKIAGADARSLCRAIRLRG 422

Query: 426 -----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++E  + LF  +   L DGDV++   +   G  R+   L E
Sbjct: 423 QVEPVFAENQEELFALLPGLLKDGDVLLTLGAGDIG--RMAQALPE 466


>gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
 gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
          Length = 487

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 160/432 (37%), Gaps = 51/432 (11%)

Query: 42  AFFAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F   +  + DG D   +  A+ +           VAS     IPV    ++L  L +  
Sbjct: 70  IFIGHQAENADGADVLVVSSAINR-------ANPEVASALERRIPVVPRAEMLAELMRYR 122

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMP 157
                      IA+ G+ GKTTT  ++    ++     T+   G  N       T A++ 
Sbjct: 123 ---------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLG 169

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
               + + E   S    +      ++P +AV+T I   H++ +     ++     E    
Sbjct: 170 AS-RYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHN 223

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-Q 275
           L   G   +  DD     +  +      +   ++G S++AD +    +Q   ++W  V +
Sbjct: 224 LPFYGLAVMCVDDPVVREILPQIA----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLR 279

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + + ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     
Sbjct: 280 PEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQV 339

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +V
Sbjct: 340 EGGSVMLVDDYGHHPREVAAVIKAIRGGWPE--RRLVMVY--QPHRYTRTRDLYEDFVQV 395

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  G
Sbjct: 396 LGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAG 455

Query: 445 DVVVVKSSNSCG 456
           D+++ + +   G
Sbjct: 456 DILLCQGAGDVG 467


>gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
 gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
          Length = 528

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 163/462 (35%), Gaps = 53/462 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-------- 78
           +  ++ DSR++ P  AF A+ G   DG  F   A+  GA LVV   +   +         
Sbjct: 48  IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
               G+  +PV  V +   AL  LA A          +  ITG+ GKTTT  +L   L+ 
Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTTSYVLYNLLAG 167

Query: 133 IKKTYACIGSYNNHIG-----------------VPLTLARM-PVDVDFGIFELGMSHLGE 174
           I        S    +                  V   L RM        + E     L  
Sbjct: 168 ILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRMVGAGASDAVLETSSHGLEL 227

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R     V    A+ T +   HL     +E     K ++FE  E  G    N DD +   
Sbjct: 228 HRVT--GVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFERTE--GPRLANVDDDYGRR 283

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292
           L  +          +FG S  AD+Q+        E     ++  G   + +    +G + 
Sbjct: 284 LAREFPGS-----LTFGYSPEADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPPLVGDYN 338

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+   + +      D    + A+       GR +R   A + GF  ++D  Y      
Sbjct: 339 ALNVAGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVD--YAHTEVG 396

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHV 411
           ++  ++V  +I+    GR I V G   E     +    ++   ++    I+     G   
Sbjct: 397 LEMVLTVARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGIITTDDPYGEDP 456

Query: 412 LALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + + D     A P   H+   +  + L   + +   + D+++
Sbjct: 457 VTIADEVMAGADPADTHI-VVDRREALLEAV-AMARENDLLI 496


>gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12D]
 gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D]
          Length = 514

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 149/464 (32%), Gaps = 55/464 (11%)

Query: 30  ISIDSRSIAPQEAFFAIK-G---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRI 92

Query: 86  FGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD   ++ G L              +I +TG+ GKT+  + +  AL+   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152

Query: 143 YNNH---------------IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHI 186
                              I +  +LA +       I  E+    L + R         I
Sbjct: 153 LGTGFVDGLAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGR--VDGTCFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + E   AKA +F G        +N DD+    L   + A     
Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLF-GWPGLRAAVINRDDAAGVRLLQNARA--DIE 267

Query: 247 IYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +G    A          +    +     +  +V        V    +G     N+L 
Sbjct: 268 TIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLA 327

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG +         AI  L    P  GR +R+          L+   Y   P +++  + 
Sbjct: 328 VLGALLAAGVPWPDAIAHLEKLQPVSGRMERF----GGEDGPLVVVDYAHTPDALEQTLR 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+ I+    G   AV G   +     +     +AE L+     HV L+  +  +     
Sbjct: 384 ALAPITEARGGNLWAVFGCGGDRDPGKRPQMGAIAERLAP----HVVLTSDNPRSEDPQH 439

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D +         E      L         DV+VV  K 
Sbjct: 440 ILDEIADGMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKG 483


>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
 gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
          Length = 495

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 145/372 (38%), Gaps = 30/372 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            V Q  + GIS  S  +     F AI G   DG  +I +A+++GA L+V  +D+      
Sbjct: 23  DVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERGASLIVTESDL---TAR 79

Query: 81  LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            ++P   VD+    L+ L  A          +I ITG+ GKTTT   L   L       A
Sbjct: 80  ENVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTTALFLQHLLKKAGFEVA 139

Query: 139 CIGSYNNHIGVPLTLARMPV-------------DVDFGIFELGMSHLGEIRFLTHLVRPH 185
             G+  N I      +++               + D  + E     L + R     ++  
Sbjct: 140 YFGTVYNEITCQRYESKLTTPSATEIQASLAWSNDDVVVIETSSQGLHQYRM--AGMQFD 197

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL  +  +E    AK  +F  ++  G   +N    +   L  +  A G K
Sbjct: 198 YALFTNLQHDHLDYYKTMEAYYQAKKSLFSLMKADGKAVINSYTMWGNRLAKELAANG-K 256

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
            + +    K A   +    + ++ + +    QG  +E +     G +  +N+++   ++ 
Sbjct: 257 QVLTVDTKKGATSYVLD--KTTDTAVVAFNGQGGQIEEIEAPLSGVYNQENLILATTVMV 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D     +A++ F    GR + Y  A            Y   P +++A ++ L+   
Sbjct: 315 DLGLDAGNTNEAIADFAGIAGRLEYYPLADGNEMVV----DYAHTPDAIEALLTTLNAQY 370

Query: 365 PHGEGRRIAVLG 376
           P+ E   I + G
Sbjct: 371 PNHE--IIHIFG 380


>gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
 gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
          Length = 476

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/426 (24%), Positives = 162/426 (38%), Gaps = 40/426 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + L Q+I G          V G +ID R +AP   F A +G   +G DFI  AV+ G
Sbjct: 1   MKLNQLDQSITGE----GGDALVTGFAIDHRKVAPGTIFGAFQGARVNGEDFIADAVRSG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VV    +              D+   A  +LA A      AT +A+TG+ GKT+T E
Sbjct: 57  AIAVVTRPGVTVEGAVH----IASDEPRAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVE 112

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168
           M            A IG+         T   +                   V    FE  
Sbjct: 113 MTRQLWRMAGHHAASIGTLGVTTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEAS 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNY 227
              L + R  T  +    A  T ++  HL     +    +AK  +F E L  TGT  +  
Sbjct: 173 SHGLTQYR--TEGLEVSAAAFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWA 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHH 286
           DD     +   + A G + + + G ++ +  +L +         + ++ + G   +V   
Sbjct: 231 DDVQSGRVIDLARARGNR-LMTVG-TRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG + A N L++ G+V     DV T +  LS   P  GR +R   A +     +    Y
Sbjct: 289 LIGAYQAANALVSAGLVLATGGDVTTTLANLSRLQPVRGRLERAAIARSGAPVYV---DY 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++AAI+ L    PH  GR I V G     G+        + +V S+     V +
Sbjct: 346 AHTPDALEAAIAALK---PHAGGRLIVVFGA---GGDRDPGKREAMGQVASM-QADRVIV 398

Query: 407 SGFHVL 412
           +  +  
Sbjct: 399 TDDNPR 404


>gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ]
 gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ]
          Length = 488

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 153/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKGAGL-VVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +  A   V+V       +   V +     IPV    ++L  L +          
Sbjct: 67  FIGHRAENAASADVLVVSSAVNSSNPEVMTALERRIPVVPRAEMLAELMRYR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++    ++        G  +    +   L     +   G    
Sbjct: 119 -HGIAVAGTHGKTTTTSLIASVFAA--------GGLDPTFVIGGRLNAAGTNAQLGSSRY 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       ++P +AV+T I   H+  +      +     +    L   G   L 
Sbjct: 170 LIAEADESDASFLHLQPMVAVVTNIDADHMDTYEGDFSRLKKTFVDFLHNLPFYGLAVLC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD     +      L  +   ++G  ++AD +    +Q   +++  V  Q ++ +E+  
Sbjct: 230 VDDPVVREIL----PLVARPTITYGLGEDADIRAVDIRQAGMRTYFTVLRQERAPLEMSV 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I      D    ++ LS F     R + Y     +G   ++ + 
Sbjct: 286 NMPGVHNVLNALATIAIACDEGIDDTAIVQGLSGFQGVGRRFQVYGELQIEGGGVMLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A +  +    P  + R + V          ++  + D  ++LS  N+    
Sbjct: 346 YGHHPREVAAVLKAVRGGWP--DRRLVMVY--QPHRFTRTRDLYEDFVQILSDANVLLLM 401

Query: 403 HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D  +L RSI         Y E    +   ++  L  GD+++ + +  
Sbjct: 402 EVYPAGEEPIPGADSRSLCRSIRQRGQLDPIYVERGADIAPLLKPLLRPGDILLCQGAGD 461

Query: 455 CG 456
            G
Sbjct: 462 IG 463


>gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 499

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 162/464 (34%), Gaps = 61/464 (13%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
              G S+DSR +   + F A+    +        F  +A+  GA  V+    +  +   +
Sbjct: 21  PFQGFSLDSRKVEKGQIFIALSSYSQPEKT--RQFAQNALDAGALAVISEATLGVTNEWV 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTY 137
                   DV   + +                 +A+TG+ GKTT   ++   +SS  K  
Sbjct: 79  C------PDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLIAELISSQGKGC 132

Query: 138 ACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHL 181
           A +G+  N I   LT +                       F   E     L + R   + 
Sbjct: 133 AVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQGRL--NG 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               IAV + ++  HL     +E  A AKA +F+       + +N DD++ +L+   + A
Sbjct: 191 CDLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLK-AVVINLDDAYAQLMLDAAKA 249

Query: 242 LGIK-TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +  I ++  ++  AD+ +   +     +   +     S  V    +G+   +N+L +
Sbjct: 250 NPSQPKILTYSLTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFNVENLLAS 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L        D+   ++ +       GR +  +         L    Y   P ++   I V
Sbjct: 310 LIAAECAGFDLADLVEFVPQLQGAPGRMQVIQ-----DANRLFVVDYAHTPDAL---IQV 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-- 417
           L+ +  H  G+  AV G   +     +          +L + + V L+  +      A  
Sbjct: 362 LTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQ----AALDHANPVILTSDNPRTEDQAQI 417

Query: 418 ---LPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              + + ++      H          F+ +    GD+VV+  K 
Sbjct: 418 FADMKQGMNFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKG 461


>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 476

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 168/463 (36%), Gaps = 52/463 (11%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + G+   ++++ P + F   KG    G  F+  A+ +GA  +V    +   I 
Sbjct: 3   GGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPII 62

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              IP   V +    L+  +   AA      ++IAITG+ GKTT    ++  L+++ K  
Sbjct: 63  DKEIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKA 122

Query: 138 ACIGSYNNHI--------GVPLTLAR-------MPVDVDFGIFE--LGMSHLGEIRFLTH 180
           A IG+   ++           LT  +       +   V  G+    L  S +G  +    
Sbjct: 123 AVIGTIGFYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRLD 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                  V   ++  HL +  G+E    AK  + +  +K   + LN DD+F   +     
Sbjct: 183 HCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVLNGDDNFCRSV----G 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K   SFG   + D  ++   +   ++ + +Q       V    +G +  QN +  L
Sbjct: 236 IYDKKKSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAAL 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  L   +D  I+ +      EG   R     N     +  + Y     +++A +   
Sbjct: 296 MAVWRLGIPIDDIIEHMWSLKLPEG---RLEKIDNPVGIDVYVD-YAHTAEALQAVLQTF 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALK 415
            +           V       G   ++    +  V S Y    ++L+         + + 
Sbjct: 352 DRSKTIY-----LVFSC---GGNRDKAKRFAMGAVASKY-ADVIYLTTDNPRDEDPIIIN 402

Query: 416 DAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +++      +  +  Y +    +   +  +   GD+V+V  K 
Sbjct: 403 ESIIAGFTEQQYYEIYLDRKVAIHQALAKA-KKGDIVLVAGKG 444


>gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
          Length = 489

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 163/476 (34%), Gaps = 45/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                L+ A+   ++           V G++ DSR + P   FFA+ G   DG  F+  A
Sbjct: 1   MNLSALISALPPGTLSAPSSANLDFSVTGLTADSRVVEPSNLFFALAGVKTDGARFVQEA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + K  G   +     A I +  + V   DD   AL ++A A        + A+TG+ GKT
Sbjct: 61  ISK--GAAAIVAASGAGISTDGVAVLRSDDPRLALARMAAAFFGPQPRVMAAVTGTAGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGI 164
           +    L    +   +  A +G+                  P+ L R+  +     V    
Sbjct: 119 SVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELASEGVTHAA 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-I 223
            E     L + R     V   +A  T +   H+     +E+  +AK  +F+ L   G   
Sbjct: 179 MEASSHGLDQRRL--DGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLLPKGAPA 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  DD + E     +   G + + + G+ K     L++ +    +   EV L G+  E+
Sbjct: 237 VIFADDPWSEQAVEVAERAGAR-VLTVGR-KGGFLSLKRVEHLRHKQIAEVHLDGRIFEI 294

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L+  G+        D A+ AL       G   R     + G      
Sbjct: 295 HVPLAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASG---RLELVGSTGDGAPAY 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +M+   +VL  + P   GR I V G   +     +     +A  L+      
Sbjct: 352 VDYAHKPEAME---NVLDAVRPFTTGRIIMVFGCGGDRDRGKRPIMGSIATKLA----DV 404

Query: 404 VWLSGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +           + L  +                   L  GD ++V  K 
Sbjct: 405 VIVTDDNPRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKG 460


>gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 454

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 147/402 (36%), Gaps = 47/402 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L IP     ++L  L +             IAI GS GKTTT  M
Sbjct: 73  SAVKPDNPELKKARELGIPTIPRGEMLAELMRFKYG---------IAIAGSHGKTTTTSM 123

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L          IG      G    L R       G F +  S   +  FL   + P
Sbjct: 124 VGTVLGKTGFDPTVVIGGKLEAYGSNAKLGR-------GEFLVAESDESDGSFL--KLTP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I  I  I   HL  +  +E+I +A  E    +   G +  N DD   + +  +      
Sbjct: 175 TIVSINNIDLEHLGFYKDLEDIKNAFVEFANKVPFYGFVVANIDDENVKSIIPRIE---- 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I  FG SK+AD +    K  + +   ++   G   E+     G H   N L T+ I +
Sbjct: 231 RKIIKFGLSKDADIRGYDLKLVNGRYKFKINDFG---EIHLSVPGIHNVYNALATISICN 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI- 363
            L        ++L  F   +   +R+    + G   +  + Y  +P  +KA +S    + 
Sbjct: 288 ELGVPFCVIKESLENFKNAK---RRFEIKYSDGILVI--DDYAHHPTEIKATLSAARDMY 342

Query: 364 ---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  ++  +  E  ++      D+  +  +Y+     + G     L
Sbjct: 343 GQNRIISVFQPHRYSRVYSLFDEFVESFDI-----PDIVIITDIYSAGENPIEGVSGQLL 397

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            D +  R  +V Y + ++     ++S + +GDVV+   + + 
Sbjct: 398 ADKIRQRRNNVFYVKDVNEAESLLKSIIKNGDVVLTMGAGNI 439


>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
 gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
          Length = 478

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/469 (18%), Positives = 166/469 (35%), Gaps = 48/469 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++L  I    +     G  +G+  DSR +   + F A++G  +DGH FI  AV+ GA  V
Sbjct: 3   EILNGIDYKILKKFETGPFSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAV 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + + ++  +     I    V ++   L           + K  I+ ITG+ GKTTT  +L
Sbjct: 63  IGSKEIEVNHD---ITYIVVKNLRQKLGVIASNFYKWPQKKLEIVGITGTNGKTTTTYLL 119

Query: 127 TIAL-----SSIKKTYACIGS--YNNHIGVPLTLARM-------PVDVDFGIFELGMSHL 172
              L     S I      +G+         P +L  +          + + I E+    L
Sbjct: 120 EQILGEDKVSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIMEVSSHAL 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
              R    ++   +   T + P HL     +EE  SAK ++F   +       N DD + 
Sbjct: 180 EMGR--VEMIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENTVFNTDDFYG 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + L  +          S+G  ++ D          +   +E+  +    ++     G   
Sbjct: 238 KRLFDEFGG------ISYGI-ESGDLNASMISHSLKTQEIELSFKEFQKKINIKLQGKFN 290

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  +G+   L   ++     L       GR +       Q F  ++D  Y     +
Sbjct: 291 VYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFECIEA--GQNFMVVVD--YAHTADA 346

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
           ++  +S L++I      + I V G     G+   S    +AE     +   +  S     
Sbjct: 347 LENILSALNEIKIE---KIITVFGC---GGDRDLSKRKPMAETAEKLSDIVIVTSDNPRT 400

Query: 409 FHVLALKDALPRSIHVHYSE----TMDGLFLFIQSSLVDGDVVVV--KS 451
              + + D + + +            +             D+V++  K 
Sbjct: 401 EDPVKILDEVSKGLSSLKDSLLEIDREKAIEKAVGMAKKNDIVLIAGKG 449


>gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
 gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
          Length = 488

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 177/472 (37%), Gaps = 38/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +    L A+   + G      V G++ DSR + P   F A+ G   DG  F   A    
Sbjct: 1   MSMATTLGALFPEAAGPEAGIPVTGLTADSRRVRPGFVFVAVPGTTMDGRSFATAAAAA- 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             + +V            +    V D   AL   A     R   TI+A+TG+ GK++  +
Sbjct: 60  GAVAMVTEGPRPEALPAEVAYLAVPDARRALALAAARLFARQPETIVAVTGTSGKSSVAD 119

Query: 125 MLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVDVDFGIFELGM 169
            +   L+ + +  A +G+                 + + +  TL R+  D    +     
Sbjct: 120 FVRQVLARLGRRSASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAGDGITDLAMEAS 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYD 228
           SH  E R L   VR   A  T +   HL      E   +AK  +FE  L    T  +N D
Sbjct: 180 SHGIEQRRL-DGVRLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLPDAATAIVNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + + A   A G+  + + G S     +L   +       + ++ +G++ +V    +
Sbjct: 239 GPMADRVAASVRARGLPLVTT-GLSGE-TLRLSAVETRGFAQALTIKAEGRAYQVDLPLV 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYN 347
           G    +N L+  G+V    A      + ++      G  G+  R A + G   ++D  Y 
Sbjct: 297 GGFQVENALVAAGLVLATPAGRGRLPEVVAALGHLAGVPGRLERVATHNGALCVVD--YA 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +  L    P   GR + V   M   G+  ++    +   +++     V ++
Sbjct: 355 HKPEALAGVLQALR---PFTTGRLVCV---MGCGGDRDRAKRPMMGR-IAVAGADRVIVT 407

Query: 408 GFHVLALKDALPRSIHVHYSETMDGL---FLFIQSSLV---DGDVVVV--KS 451
             +  +   A  R+  +  +   + +      I++++     GDV+VV  K 
Sbjct: 408 DDNPRSEDPAAIRAEILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKG 459


>gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptothrix cholodnii SP-6]
 gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii
           SP-6]
          Length = 513

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 156/461 (33%), Gaps = 46/461 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSRS+   EAF A  G   DG  ++  A+  GA   ++  D  A+ G     +  +  +
Sbjct: 28  TDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAAAFGFDDERIAALPGL 87

Query: 92  LGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN---- 145
             A  +LA         +  +IA +G+ GKT+T      ALS   +    IG+       
Sbjct: 88  KAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGVIGTLGVGEPP 147

Query: 146 --------------HIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                             PLTL    R   D  F    +  S +G +          +A+
Sbjct: 148 SRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHRLDAAPIRVAL 207

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T   P HL     +     AK  +F+         +N DD+   +L  +  A G   ++
Sbjct: 208 YTNFTPDHLDYHGDMVAYWLAKRALFDW-PGLQAAAINVDDAQGAVLADELAARGDLDLW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++   ++A  +              +      + V  H IG + A N+L  +G +  L  
Sbjct: 267 TYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNASNVLAVIGGLRALGL 326

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-------LIDESYNANPASMKAAISVLS 361
            +  A    + F    GR  R R A   G           +   Y   P ++  A+S L 
Sbjct: 327 PLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYAHTPDALDKALSALR 386

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
            ++    GR + V G     G    +    +  + +      V ++          A+ D
Sbjct: 387 PVAHAQGGRLVCVFGC---GGNRDATKRPQMGAIAAQL-ADAVCVTSDNPRLEEPQAIVD 442

Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + HV            + +     DVV++  K 
Sbjct: 443 QILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGKG 483


>gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 467

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 161/428 (37%), Gaps = 49/428 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
              ++KG  LVV    +      L       +P+     +LG + +    A        I
Sbjct: 63  AENIEKGIELVVYTAAIHPDNPELVAAKKAGLPIISRAGLLGEIMRNYRNA--------I 114

Query: 112 AITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            I+G+ GKTTT  M+   L  +       +G     IG  +           G  E  ++
Sbjct: 115 NISGTHGKTTTTSMIAEILLEADWDPTVTVGGMMRDIGGNI---------RVGQSENFIA 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I V+  +   HL  F  +E+I  +     E L + G + +N D  
Sbjct: 166 EACEYTNSFLSFYPTIEVVLNVEADHLDFFKDLEDIRHSFRRFTEKLPENGLLVINRDIP 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +E             + ++G  ++AD+      +   +  S+   +   +   +     
Sbjct: 226 HYEYFTEGLRC----RVLTYGHDRDADYTANFISYDHYAHPSYTLFERGKELGPISLGVT 281

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   L  +++T  +AL  F    G  +R++       FT+ID+ Y  
Sbjct: 282 GEHNIYNSLSAIAVGRALGIELETIRRALHRFQ---GTDRRFQKKGEVCGFTIIDD-YAH 337

Query: 349 NPASMKAAISVLS---------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +P  + A I                PH   R  A++ D    G LSQ+  I LA++ +  
Sbjct: 338 HPQEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFA--GALSQADEIVLADIYAAR 395

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
             + V +S   +   +  L ++ +V+Y      +  F+   L  GD+++   +     YR
Sbjct: 396 EKNTVGVSSEDLR--RHMLEQNTNVYYIPDFQRIEDFLMERLQPGDLLITMGAGDI--YR 451

Query: 460 LINLLLEE 467
           + + LL+ 
Sbjct: 452 VGDALLKR 459


>gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
 gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
          Length = 469

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 163/440 (37%), Gaps = 46/440 (10%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            +   K  H  G D ++      +  V  N   + +     IPV     +L  L +    
Sbjct: 63  VYLGHKAEHIKGADVVVR-----SSAVEWNNPEIVAAREQMIPVIPRAAMLAELMRFR-- 115

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV 160
                    IA+ G+ GKTTT  +++  L+      +  IG   N +G+   L + P   
Sbjct: 116 -------HGIAVAGTHGKTTTTSLVSSVLAEGGLDPSFVIGGKLNSLGINAQLGQSP--- 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
            + + E   S    +      ++P +A++T I   H+  + +  E++ +   E    L  
Sbjct: 166 -YFVVEADESDASFL-----FLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPF 219

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-- 277
            G+  +  DD     +         +   ++G ++ A ++   W Q    S   V     
Sbjct: 220 YGSAVVCIDDPEVRKILPFIE----RPTLTYGFTEEAHYRAIDWTQNELISEFTVIRPKS 275

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +++     G H   N L ++ I + L  D ++ I+AL  F     R +       + 
Sbjct: 276 YSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEK 335

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+ + Y  +P  + + I     + P+   R + V          +Q       +VLS
Sbjct: 336 GSALVVDDYGHHPQEILSTIDAFRHVWPNK--RLVHVF--QPHRYTRTQELQEQFVDVLS 391

Query: 398 L---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L         Y+     + G +  +L + +  +           L   +  S+ +GDV++
Sbjct: 392 LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVIL 451

Query: 449 VKSSNSCGFYRLINLLLEEF 468
           ++ + S G  ++   L++E 
Sbjct: 452 IQGAGSIG--QIAVNLMQEL 469


>gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
 gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
          Length = 499

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 166/452 (36%), Gaps = 45/452 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+++    FFA+ G   +G D++     +G  +VVV   +     +L + V  V 
Sbjct: 33  LATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQGCRVVVVPEVVKLD-ETLDLAVIRVP 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L ++        L   ++I A+TG+ GK++          +I  + A +G++   +  
Sbjct: 92  DTLMSMTAFITKFALPYPSSICAVTGTNGKSSISYYSAQIAKAINLSSAIVGTFGVGLLD 151

Query: 150 PLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            L  +                     V+   FE     L + R     +    A+ + ++
Sbjct: 152 DLKPSEQTTPDLLSMHTLAITFASQGVEHMTFEASSHALDQGRI--EGLPIETAIYSNLS 209

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-K 252
             HL     +   A AKA++F    +     +  DD + +++   +       +YS+  +
Sbjct: 210 RDHLDYHGSMAAYAEAKAKLFRF-PQLKRAVICIDDEYSDIMLDAAAC----PVYSYSLQ 264

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +NADF        +++   ++++ GKS  V    +G     N +  L        D   
Sbjct: 265 HENADFFASNLNYLTDRVEFDLKVLGKSYSVSLPLLGEFNVANAIAALAAHWDQVEDKAQ 324

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            I ALS+     GR +            L+   Y   P++++ A+  L     H +GR  
Sbjct: 325 LISALSLLSGAPGRMQMVNLQ----SAPLVVIDYAHTPSAIEVALKALR---LHNKGRLT 377

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYN-----------ISHVWLSGFHVLALKDALPRS 421
            + G   +     +    + A   S              ++ +      +L  KDAL   
Sbjct: 378 CIYGCGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESVAQILDDALIMLENKDALVEQ 437

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +H           + +     DV+++  K 
Sbjct: 438 GSLHILPDRRAAIFDVIAKAQSDDVILIAGKG 469


>gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H  +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPADGY-PRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHL 197
           P IAV+T I  AH+
Sbjct: 181 PDIAVVTMIGEAHI 194


>gi|226941967|ref|YP_002797041.1| UDP-N-acetylmuramate--L-alanine ligase [Laribacter hongkongensis
           HLHK9]
 gi|254766007|sp|C1D5L5|MURC_LARHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226716894|gb|ACO76032.1| MurC [Laribacter hongkongensis HLHK9]
          Length = 469

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 147/407 (36%), Gaps = 42/407 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +  +  IP+     +L  L +             IAI G+ GKTTT  ++
Sbjct: 73  AVQADNPEVMAARAAGIPIVPRAQMLAELMRFKQG---------IAIAGTHGKTTTTSLV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             AL                IG  LT A     +  G + +  +   +  FL   + P +
Sbjct: 124 ASALGRAGLDP------TFVIGGRLTAAGSNARLGSGDYLVAEADESDASFLC--LSPVM 175

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+  +    E +  A  +  + L   G   L  DD     +         +
Sbjct: 176 AVVTNIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAVLCIDDKHVREIL----PFVTR 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLG 301
            + ++G + +AD +    +  + Q   +V  Q +  E  H       G H   N L  + 
Sbjct: 232 PLTTYGLTPDADVRADNIRPVAGQMLFDVVWQQQGEEQRHPVTLNLPGRHNVLNALAAIA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVL 360
           I     AD+      L+ F     R +RY   AL  G    + + Y  +P  M A ++  
Sbjct: 292 IGLECGADIGAIAAGLTEFSGVGRRFQRYGDIALPAGGQATVVDDYGHHPVEMAATLAAA 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD- 416
               P     R  VL         ++    D   VLS  +    + V+ +G   +   D 
Sbjct: 352 RGAFPE----RRLVLAFQPHRYTRTRDLFEDFVGVLSTVDALLLAEVYPAGEAPIVAADG 407

Query: 417 -ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            AL R++ V       + E +  L   +   L DGDVV+   + S G
Sbjct: 408 RALARAVRVAGKVEPVFVERIADLPATLLDQLQDGDVVLTMGAGSIG 454


>gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 491

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 148/453 (32%), Gaps = 35/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+      A +  +  
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFEPPAPAELP-VPA 73

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V  +   L  +             ++ +TG+ GKT+T ++L  AL+ +  +   +G
Sbjct: 74  DAIAVPGLRARLGSMADQFHGHPSRALRMVGVTGTNGKTSTVQLLAQALTLLGTSTGTLG 133

Query: 142 SYNNHIGV---------PLTLARM-------PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +           PL L+                  E+    L + R     V   
Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQGR--VDAVHFD 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T +   HL     + +  +AKA++F          +N DD+F   L A        
Sbjct: 192 VAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQ-AAVVNLDDAFGRTLFASLDPALRA 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S      A  +    +         +++      V    +G     N+L   G +  
Sbjct: 251 IGVSSRGQGGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNLLAVAGALHA 310

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        + L    P  GR  R           L+   Y   P +++ A++ L     
Sbjct: 311 LDHAPAQIAQVLGQLQPIHGRMNRL---GGAHGAPLVVVDYAHTPDALEQALASLRS--- 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSGFH----VLALKDALPR 420
           H + R I V G   E     +     +AE+   +  ++     G      V  +     R
Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRGFAR 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                             +     D+V++  K 
Sbjct: 425 PDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 457


>gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
 gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
          Length = 526

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/465 (21%), Positives = 166/465 (35%), Gaps = 55/465 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPV 85
            GI++ S        F AI G    G  F   A++ GA +V+ + D  A      L +PV
Sbjct: 46  RGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVPV 105

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D    + +L     A   ++ T +A+TG+ GKTTT  ++  A++S     +  G+ 
Sbjct: 106 IQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTV 165

Query: 144 NNHI-----GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             H+         T A  PV           +   G+ EL    L   R     +   +A
Sbjct: 166 ETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHALSLHR--VDGIVFDVA 223

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL  +  +E    AKA +F   E +    +  DD +   L  ++      T 
Sbjct: 224 AFTNLQHDHLDYYGDMENYFQAKALLFTP-EHSRHGVVCVDDEWGRRLAQQATVP--VTT 280

Query: 248 YSFGKSKNADFQLRKW--KQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            S    + AD+Q+R     Q   ++    V   G    V    +G    QN  + +    
Sbjct: 281 VSALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAV 340

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D+   I A+       GR +  +     G   L+   Y   P +++     L    
Sbjct: 341 SLGIDLADVISAIEDAPQIPGRME--KVNPTPGGQPLVIVDYAHTPEALE---WTLRSTR 395

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------------- 411
               GR + V G     G+   +    LA++ +      +W++  +              
Sbjct: 396 ELTSGRVVVVFGT---DGDRDATKREHLAQIAA-READVLWVTDENPRTEVPQEIRDYLL 451

Query: 412 LALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KSS 452
             +    P    V    T   D +   I ++   GD V++  K +
Sbjct: 452 RGIASVRPGMEDVTEVTTCRRDAVRRAILAA-EPGDTVIITGKGA 495


>gi|254480262|ref|ZP_05093510.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
 gi|214039824|gb|EEB80483.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
          Length = 478

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 153/444 (34%), Gaps = 57/444 (12%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVAS-------IGSLSIPVFGVDDVLGALNKLAVA 101
             + GH     A   G   VVV++  V              IPV    ++L  L +    
Sbjct: 63  EVFIGHR----AANVGTADVVVSSSAVDESNAEVVAAREARIPVVPRAEMLAELMRYR-- 116

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV 160
                    IA+ G+ GKTTT  ++              IG   N +G    L       
Sbjct: 117 -------HGIAVAGTHGKTTTTSLIANVFGEAGLDPTFVIGGLVNSVGSNAQLGA----S 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            F I E   S    +      ++P + V+T I   H+  +      +     E    L  
Sbjct: 166 RFLIAEADESDASFLH-----LQPMVTVVTNIEADHMDTYGGDFAVLRRTFLEFLHNLPF 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-G 278
            G   L  DD     L  +      + + ++G + +ADF++   ++    +   +     
Sbjct: 221 YGVAVLCIDDPVIRELLPEVS----RQVVTYGFADDADFRISNMQRDGLTTGFTINRPSN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + + V  +  G H   N   T+ +      + +     L+ F     R  R       G 
Sbjct: 277 EPLPVTLNMPGLHNVLNAAATVAVACDEGLEDEAIQSGLAGFAGVGRRFTRMGELNLPGG 336

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  ++A +    Q  P    R + V          ++  + D   VLS 
Sbjct: 337 TALLVDDYGHHPTEVRATLDSARQAWPEQ--RVVMVY--QPHRYSRTRDLYDDFVSVLSR 392

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            ++     V+ +G   +   D  +L RSI         + E ++ +   + S +  GDVV
Sbjct: 393 CDVLILLEVYAAGEEAIPGADSRSLARSIRQRGQLEPIFVENIEDVPQILCSVVEQGDVV 452

Query: 448 VVKSSNSCGFYRLINLLLEEFPAI 471
           V + + + G       L +E  A+
Sbjct: 453 VTQGAGNIG------ALSKELAAM 470


>gi|109899819|ref|YP_663074.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas atlantica
           T6c]
 gi|122971620|sp|Q15Q18|MURC_PSEA6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109702100|gb|ABG42020.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoalteromonas atlantica
           T6c]
          Length = 484

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 158/423 (37%), Gaps = 50/423 (11%)

Query: 65  AGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV          V +   + IPV    ++L  L +             IAI G+ G
Sbjct: 77  ANVVVVSSAIDPTNPEVNAANEMRIPVIRRAEMLAELMRFR---------HGIAIAGTHG 127

Query: 119 KTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTTT  ++    +   +  T+   G  N+      T AR+     + I E   S    + 
Sbjct: 128 KTTTTSLIATIFAQAELDPTFVIGGLLNS----AGTNARLGSS-QYLIAEADESDASFVH 182

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+       +++     +    L   G   L  DD     L
Sbjct: 183 -----LQPMVSVVTNIEPDHMETYQGDFQKMQDTYIDFLHNLPFYGLAVLCIDDPVITQL 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQ 294
             +      +   ++G S+ AD +    K    QS   ++ +  + ++VV +  G H   
Sbjct: 238 LPRIK----RKYLTYGYSEVADVRATHVKHTFNQSEFTLKRKDHQDIQVVVNAPGKHNVL 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + + +    +      AL+ F     R +            L+ + Y  +P  ++
Sbjct: 294 NALAAIAVATDENIEDAAITAALANFSGIGRRFEMLGEFATGEGDVLLVDDYGHHPTEVE 353

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHV 411
           A I+V      +   RR  V+         ++  + D   VLS  ++     V+ +G   
Sbjct: 354 ATIAVARN---NWPDRR-LVMAYQPHRYSRTRDLYEDFVRVLSQVDVLLLLDVYSAGEEK 409

Query: 412 LALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   D  +L RS+         Y    + L   +  +L D D+++ + + + G  ++   
Sbjct: 410 IEGADSKSLCRSMRQRGQLEPIYVADKNELPKLLADNLKDQDILLTQGAGNIG--QIAKE 467

Query: 464 LLE 466
           L E
Sbjct: 468 LQE 470


>gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 472

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/446 (21%), Positives = 169/446 (37%), Gaps = 55/446 (12%)

Query: 44  FAIKGPH-YDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALN 96
            A  G   ++GH     A   GA  +VV          V     +SIPV    ++L  L 
Sbjct: 57  LAAMGARVFEGHAASNIA---GARALVVSSAVDEQNPEVQEARRISIPVIPRGELLAELM 113

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLA 154
           +L            IA+ GS GKTTT  M    L  + +  T    G          T+ 
Sbjct: 114 RLKYG---------IAVAGSHGKTTTTSMAATILNYAGLDPTVVVGGRVG-------TMG 157

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                V    F +  S   +  FL   + P IAV+T +   HL ++  ++ I +A  E  
Sbjct: 158 GSNARVGHSDFLVVESDESDGSFL--KLAPIIAVVTNVDREHLDHYPDLDAIRAAFLEFV 215

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G + +  DD+  + L  +      +   ++G +  AD +          S   +
Sbjct: 216 NKVPFYGAVIVCLDDANVQGLLPEIR----RRTITYGTTAQADMEAGDISCGPFASEFRL 271

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           + +   +     H  G H   N +  + +   L    DT  +AL  F   +   +R++  
Sbjct: 272 RYRTADLGRFRLHIPGRHNVLNAMAAIAVAMELEVKPDTIREALETFSGVD---RRFQLR 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQ 386
             +    ++D+ Y  +P  ++A +    Q       RRI VL            M E ++
Sbjct: 329 GQERGIAVVDD-YGHHPTEIRATLDGARQ----CGFRRIHVLFQPHRYTRTFHLMDEFAR 383

Query: 387 SFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
           SFH  D   V+ +Y  S   + G    +L + + +  H  V Y  T+D     + ++  +
Sbjct: 384 SFHQADSLFVMDIYAASEKPIPGVTAESLVERIRQFGHRGVEYVGTLDRGVDALVAAASE 443

Query: 444 GDVVVVKSSNSC--GFYRLINLLLEE 467
           GD+V+   + S      +++  L  E
Sbjct: 444 GDLVLTLGAGSVYQAGEKVLERLRTE 469


>gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
 gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
          Length = 495

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/486 (16%), Positives = 172/486 (35%), Gaps = 55/486 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P  +  DLL          +P   + G+++D+R I P + F A++G   D   FI  A+
Sbjct: 1   MPNTSLKDLL----APWYDAIPDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPAAI 56

Query: 62  QKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITG 115
           + GA  V+ +   +     ++    +PV     +   L+ +A           T+I +TG
Sbjct: 57  EAGAAAVIADDGDIHGQFDVTMQGGVPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGVTG 116

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------TLARMPVDVDFGIF---- 165
           + GKTT  +++   +  +    A +G+  N     L      T + + +      F    
Sbjct: 117 TNGKTTVSQLVAQWIDLLGGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQQG 176

Query: 166 ----ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                + +S  G ++     V    A+ T ++  HL     +E  A AK  +F       
Sbjct: 177 ATHVAMEVSSHGLVQDRVKAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLFTHYGSP- 235

Query: 222 TIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              +N DD           +A + ++  K ++   + +     L      +    +    
Sbjct: 236 VSVINADDPVGMRWLGSMPEAVAVSMSEKAVH---QHQGRKLWLTAVDYATSGVSITFDS 292

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E     +G     N+L++L  +  L  +    + + +      GR + +    ++
Sbjct: 293 SWGEGEFTTPLVGEFNVMNLLVSLATLLALGYEKAALLASATQLQAVVGRMEVF----HR 348

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +    Y   P +++ A+  L +   H +G+   + G   +     +    D+AE L
Sbjct: 349 PDKPMCVVDYAHTPDALEKALHALRR---HCDGKLWCIFGCGGDRDIGKRPMMADIAEKL 405

Query: 397 SLYNISHVWLSGFHVLA------LKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V L+  +  +      + D L                    +   +  + DV+
Sbjct: 406 A----DIVILTDDNPRSESPQAIVADMLRGMTDPDKAIILHDRAQACSYALENASEQDVI 461

Query: 448 VV--KS 451
           ++  K 
Sbjct: 462 LIAGKG 467


>gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC
           2396]
 gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 142/407 (34%), Gaps = 43/407 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +     IPV    ++L  L +             +AI G+ GKTTT  +
Sbjct: 81  SAVAKDNPEVTAANEQRIPVIARAEMLAELMRYR---------HGVAIAGTHGKTTTTSL 131

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +   L       T+   G  N+      T A++     + + E   S    +        
Sbjct: 132 MASVLGEAGLDPTFVIGGRLNS----AGTNAKLGAS-RYLVAEADESDASFLHLT----- 181

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P ++V+T I   H+  +    E++     +    L   G   + YDD     +  +    
Sbjct: 182 PMVSVVTNIDADHMHTYGGDFEKLKQTFVDFLHNLPFYGVAVMCYDDPVVREIIPRV--- 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTL 300
             +++ ++G ++ AD +     Q   Q+    +  G    + +  +  G H   N L  +
Sbjct: 239 -GRSVITYGFNEKADVRAVDIAQQGMQTSFTAKRPGGHPDLRISLNMPGKHNVLNALAVI 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +      +  + AL+ F     R + Y          ++ + Y  +P  + A I  +
Sbjct: 298 AVATDEGIADEAIVSALNKFQGVGRRFQVYGNYPVDEGSVMLVDDYGHHPREVDATIKAI 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHV 411
               P    R +AV          ++  + D  +VLS          Y      + G   
Sbjct: 358 RDGWPEK--RLVAVF--QPHRYTRTRDLYEDFVQVLSKVDVLVLMDVYPAGEKEIPGADG 413

Query: 412 LALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +L  ++ +   +   + E    +   +   L DGD+++ + +   G
Sbjct: 414 RSLCRSIRQRGQLDPIFIERGQDVKAVLSGVLQDGDLLLTQGAGDIG 460


>gi|237807301|ref|YP_002891741.1| UDP-N-acetylmuramate--L-alanine ligase [Tolumonas auensis DSM 9187]
 gi|259509784|sp|C4LA26|MURC_TOLAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237499562|gb|ACQ92155.1| UDP-N-acetylmuramate/alanine ligase [Tolumonas auensis DSM 9187]
          Length = 484

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 161/414 (38%), Gaps = 48/414 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T        V +   L IPV    ++L  L +             IAI G+ 
Sbjct: 78  GASVVVVSTAIHGDNPEVMAARELRIPVVRRAEMLAELMRYR---------HGIAIAGTH 128

Query: 118 GKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++    +      T+   G  N+      T AR+     + I E   S    +
Sbjct: 129 GKTTTTSLIASVYAQAGADPTFVIGGLLNS----AGTNARLGTS-RYLIAEADESDASFL 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                 ++P +A++T I   H+  +     ++ +   E    L   G   +  DD     
Sbjct: 184 H-----LQPMVAIVTNIEADHMDTYGGDFTKLRATFLEFLHNLPFYGLAVVCIDDPVIRE 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           L  +      +   ++G S++AD Q++++ Q   QS   ++LQ  S   +  +  G H A
Sbjct: 239 LLPEI----GRATITYGYSEDADVQVQEFVQEGSQSQFRLRLQDGSFLPLRLNLPGRHNA 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N   T+ +        D  + AL+ F     R ++Y          L+ + Y  +P  +
Sbjct: 295 LNAAATVAVALEDHIPTDAIVDALAQFAGVGRRFQQYGEFDTGAGKVLLVDDYGHHPTEV 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH 410
           +A ++      P    R + V          ++  + D AEVL+  ++     V+ +G  
Sbjct: 355 RATLAATRAAWPE--RRLVLVF--QPHRYTRTRDLYDDFAEVLAKVDVLIMLDVYAAGED 410

Query: 411 VLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   D   L RSI         +  T   +   +   L DGDVV+ + + + G
Sbjct: 411 PIPGADGRSLCRSIRQRGTLDPIFVATPAEVPGVLADVLKDGDVVLTQGAGNVG 464


>gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
 gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
          Length = 468

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 164/432 (37%), Gaps = 40/432 (9%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           H      +  G   VV+++ + +S   +   V      L  + +  + ARL +    IA+
Sbjct: 57  HQHDAANLAPGVQEVVISSAVPSSNPEV---VAARQRSLPVVKRGELLARLFNARRGIAV 113

Query: 114 TGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTTT  ++ + +     +  A IG Y           R       G F +  +  
Sbjct: 114 AGAHGKTTTSALVALVMKEGGLEPAAVIGGYVREFASNAYPGR-------GDFLVAEADE 166

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +  FL   ++P IA+IT I   HL ++  ++ I +A  +  + +   G   L  +D   
Sbjct: 167 SDGSFL--WLKPEIALITNIEADHLEHYGSLDRIVAAFKDFIDQIRPGGKAILCAEDPRV 224

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYH 291
             L A S     + + ++G +   D++    +         +  + + + ++     G H
Sbjct: 225 AGLVACSP----RQVITYGLNGRPDYRATGVQMAGMGGRAAIYYREQYLGQLTMAVPGRH 280

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  +     L        +AL  F    G G+R+    + G   ++D+ Y  +P 
Sbjct: 281 NILNALGAIAAGHQLGIPFAVMARALGQF---RGVGRRFEILWDDGTTRVVDD-YAHHPT 336

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNIS 402
            ++A ++  SQ+      R +AV          +   + +  +            +Y   
Sbjct: 337 EIRATLAAASQVGAK---RVVAVF--QPHRYTRTHHLYREFGQAFRQADVVIVNDIYPAG 391

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              L G +   +   +  S H  V+Y  T++    F++ S   GD+V+   +     +R+
Sbjct: 392 EAPLPGVNSQLITGEIKGSGHQQVYYLPTLEETLAFLKKSCRPGDLVLTLGAGDV--WRV 449

Query: 461 INLLLEEFPAIQ 472
              L +   A Q
Sbjct: 450 GMGLAQYLEAKQ 461


>gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 480

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 160/432 (37%), Gaps = 51/432 (11%)

Query: 42  AFFAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F   +  + DG D   +  A+ +           VAS     IPV    ++L  L +  
Sbjct: 63  IFIGHQAENADGADVLVVSSAINR-------ANPEVASALERRIPVVPRAEMLAELMRYR 115

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMP 157
                      IA+ G+ GKTTT  ++    ++     T+   G  N       T A++ 
Sbjct: 116 ---------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLG 162

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
               + + E   S    +      ++P +AV+T I   H++ +     ++     E    
Sbjct: 163 AS-RYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHN 216

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-Q 275
           L   G   +  DD     +  +      +   ++G S++AD +    +Q   ++W  V +
Sbjct: 217 LPFYGLAVMCVDDPVVREILPQIA----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLR 272

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + + ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     
Sbjct: 273 PEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQV 332

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +V
Sbjct: 333 EGGSVMLVDDYGHHPREVAAVIKAIRGGWPE--RRLVMVY--QPHRYTRTRDLYEDFVQV 388

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  G
Sbjct: 389 LGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAG 448

Query: 445 DVVVVKSSNSCG 456
           D+++ + +   G
Sbjct: 449 DILLCQGAGDVG 460


>gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAO1]
 gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 480

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 160/432 (37%), Gaps = 51/432 (11%)

Query: 42  AFFAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F   +  + DG D   +  A+ +           VAS     IPV    ++L  L +  
Sbjct: 63  IFIGHQAENADGADVLVVSSAINR-------ANPEVASALERRIPVVPRAEMLAELMRYR 115

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMP 157
                      IA+ G+ GKTTT  ++    ++     T+   G  N       T A++ 
Sbjct: 116 ---------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLG 162

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
               + + E   S    +      ++P +AV+T I   H++ +     ++     E    
Sbjct: 163 AS-RYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHN 216

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-Q 275
           L   G   +  DD     +  +      +   ++G S++AD +    +Q   ++W  V +
Sbjct: 217 LPFYGLAVMCVDDPVVREILPQIA----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLR 272

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + + ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     
Sbjct: 273 PEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQV 332

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +V
Sbjct: 333 EGGSVMLVDDYGHHPREVAAVIKAIRGGWPE--RRLVMVY--QPHRYTRTRDLYEDFVQV 388

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  G
Sbjct: 389 LGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAG 448

Query: 445 DVVVVKSSNSCG 456
           D+++ + +   G
Sbjct: 449 DILLCQGAGDVG 460


>gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
 gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
          Length = 487

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/470 (19%), Positives = 158/470 (33%), Gaps = 45/470 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + L+ ++   +       V+ +  DSR  A    F  ++G + D H FI   +QKG
Sbjct: 1   MKLREWLKEMEYELLQGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A ++V    +        I V  V +   AL+ L+ A       K T I +TG+ GKTTT
Sbjct: 61  AKVLVTEEAVTVPEE---ITVLRVGNGRNALSLLSAARFGYPARKMTTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPV------------DVDFGIFELG 168
             M+   L +  +    IG+    I      T+   P             +       + 
Sbjct: 118 TYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKMVEQGCRYMVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +      +    ++   I+  H+     +  EE    K  +   L+ +    +N
Sbjct: 178 VSSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLL---LQNSRVCLVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD  F  +   + A     I +F    +ADF+    K   E  ++ +  +     E   
Sbjct: 235 RDDGHFREIIEGAKA----EIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEGDYESRL 290

Query: 286 --HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N +   G+ S L    +    AL           R          T+I 
Sbjct: 291 RVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQVDG----RMEIVYKSAKCTVIV 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  N  SM++ +  L    P    R + V G         +    ++   L+  +I  
Sbjct: 347 D-YAHNAVSMESLLMTLRDYKPK---RLVVVFGCGGNRARDRRYSMGEIGGKLADLSIIT 402

Query: 402 ---SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
              S    +   +  +K  L R                +  S   DGD++
Sbjct: 403 ADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQDGDII 452


>gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 113/308 (36%), Gaps = 25/308 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 16  DALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 75

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  + G L+ +             ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 76  PLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 136 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATA--LAFD 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD F   L A        
Sbjct: 194 VAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SDLKCRVINLDDDFGRELAAVKQES--- 249

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 250 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 309

Query: 305 ILTADVDT 312
            L   +D 
Sbjct: 310 GLDYALDE 317


>gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 495

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 154/417 (36%), Gaps = 50/417 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  I    I       +NG+ +++ +    + F A++G    G + I  A++KG
Sbjct: 34  MNITQLLADITPTKI----DLEINGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEKG 89

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
              V+V++  +      +IPV  ++++   L  LA A   + +K  +I +TG+ GKT+  
Sbjct: 90  CVAVLVDSHDL----ECAIPVIRIENLKQYLPALASAYYSQATKVEVIGVTGTNGKTSVG 145

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGM 169
             ++  LS +      IG+         +    P               +++  + E+  
Sbjct: 146 YFISQMLSELGIKNGFIGTLGISNSDVASANTTPDIFTLYKALHQYHLDNINTAVLEVSS 205

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R     +    A+ T +   HL     ++E    K ++F   +   ++ +N DD
Sbjct: 206 HGLDQNR--VAGLNFKQAIFTNLTQDHLDYHQTLDEYRQVKLKLFSF-DSIQSVIINQDD 262

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           ++ +     S     K   ++      DF+    K    +     QL     E     +G
Sbjct: 263 AYHQDFLDASKG---KKQTTYSIK---DFE----KITINEQGFLCQLDNFVFE--IPLLG 310

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L     V  L    +  I  LS   P  GR ++ + AL           Y   
Sbjct: 311 KFNLSNVLAAFNSVEQLGFSREGIIPLLSRLFPPLGRMQKIKKALAW-------VDYAHT 363

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           P ++  AI+ L +  P  + R +   G     G   +S    + ++ S    + V  
Sbjct: 364 PDALANAITTLKEHHPEHKIRIVFGCG-----GNRDKSKRAKMGKIASKLADTIVLT 415


>gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 485

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 158/451 (35%), Gaps = 44/451 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G +ID R +AP   F A  G   +G DFI  A+     + VV        G++ IP  
Sbjct: 24  VTGFAIDHRKVAPGTVFGAFPGARVNGEDFIPAAIAA-GAVAVVARPEAVVEGAVHIPD- 81

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              +      ++A         T++A+TG+ GKT+T EM            A IG+    
Sbjct: 82  --AEPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMAGHRSASIGTLGVT 139

Query: 147 IGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    M                   +    +E     L + R  +          T
Sbjct: 140 TADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQYR--SEGPVVAAGAFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++  HL     +E   +AK  +F+  + + G   +  DD + +     +    ++ + +
Sbjct: 198 NLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDHARRRALR-VLT 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+      +L   K       +++  +G++ ++    IG + A N L++ G+V     D
Sbjct: 257 VGERGE-TIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSAGLVLATGGD 315

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 AL    P  GR +R           +    Y   P ++ AA + L    PH EG
Sbjct: 316 PTQTFDALGRLQPVRGRLERAAITRTGAPVYV---DYAHTPDAITAACAALR---PHVEG 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIHV 424
           R I V G     G+        +    +      V ++     G    A++ A+      
Sbjct: 370 RLIVVFGA---GGDRDPGKRGPMG-AAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCTG 425

Query: 425 HYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
              ET D         +    GD+V+V  K 
Sbjct: 426 VARETGDRRAAIAEAIAQAGKGDIVLVAGKG 456


>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
 gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
          Length = 508

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 169/464 (36%), Gaps = 47/464 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----- 78
              + G + DSR I     F AIKG   DGH +I  A+   A +++ +            
Sbjct: 25  NTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESAINNKASIIIYDNTADKEFIKKLQ 84

Query: 79  -GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +    V +    L  ++         K   I ITG+ GKTTT  +L   L + K 
Sbjct: 85  DNHKDVHFVAVKNPRECLAYISAKLFYEPTKKINTIGITGTNGKTTTTYLLKSVLEANKN 144

Query: 136 TYACIGSYNNHI--GVPLTLARMPVDVD--------------FGIFELGMSHLGEIRFLT 179
               IG+  N I      T    P  +D                + E     L   R   
Sbjct: 145 KTTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKSLKKGISHIVMESSSQALAMNR--C 202

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELL 235
             +    A+ T I   HL     ++    AK ++F    E  +K     +N D   F+ +
Sbjct: 203 DYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLLKESSKKKKLAIVNIDTDNFKQI 262

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQ 294
                 LGIK + ++G ++ AD+  +     S+ +  E   +GK +  V    +G     
Sbjct: 263 SNYIKKLGIKMV-TYGINEKADYYGKVISLNSKNTEYEFYAKGKLISKVKLSMLGRFNIL 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L  V     D++ +IKA+     +     R+     +    ++   Y+  P S++
Sbjct: 322 NSLSILAYVCENKLDIEKSIKAMRKVQVEG----RFEIVTKEKHPFIVAVDYSHTPDSLE 377

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-----SHVWLSGF 409
             +    +++P+   R IAV G   +     +    ++AE  +   I             
Sbjct: 378 NILVEAKKLNPN---RVIAVFGCGGDRDRKKRPIMAEIAEKYADIAILTTDNQRTEDINQ 434

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  ++     + +    +  + +F  ++ +  + D++++  K 
Sbjct: 435 IMNDIEKGFKNNNYKKIIDRKEAIFEAVKEA-KENDIIIIAGKG 477


>gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
 gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 158/452 (34%), Gaps = 53/452 (11%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S  +     F A  G   DG  FI  A+ +GA ++V    +    G+    +  VD+   
Sbjct: 28  SAKVVSGGVFVAASGTAEDGARFIPDALARGATVIVAGPGIALPEGA-KAALVTVDEPRK 86

Query: 94  ALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148
           AL  LA A     R    ++ +TG+ GKTT   ++    ++  K    +G+         
Sbjct: 87  ALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRWPGVT 146

Query: 149 ------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                       +  +LA M     D  + E     L + R     +     V T +   
Sbjct: 147 RDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRL--AGLSFAAGVFTNLTQD 204

Query: 196 HLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL     +E   +AKA++F E L    T  LNYDD F   L  +  A        +G +K
Sbjct: 205 HLDYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAA-----VGYGLTK 259

Query: 255 NADFQLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                 R           +   +      ++ EV     G H A N+L  +G    L   
Sbjct: 260 APAGFARLLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLP 319

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +T   AL+  H   GR +R     N    T+  + Y   P +++  +    + +    G
Sbjct: 320 YET-FDALADCHGAPGRLERI---PNASGLTVFVD-YAHTPDALENVLGAAREFTA---G 371

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRS 421
           R  AV G     G+  ++    +AE +S      V  S           +   K  L ++
Sbjct: 372 RLFAVFGC---GGDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAIIEDAKPGLAKA 428

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V               ++   DV+V+  K 
Sbjct: 429 RKVIIEPDRRRAIALALDAMRPEDVLVIAGKG 460


>gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
 gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
          Length = 499

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 177/488 (36%), Gaps = 66/488 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + I  +S  +    AFF + G + DGH +I  A+  GA  ++ +  ++ +  +   P  
Sbjct: 24  FSSIEYNSTLVVQDCAFFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEYAKQHPDL 83

Query: 87  ---GVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V +V  AL  L+       +  +I   +TG+ GKTTT   +    + +      IG
Sbjct: 84  SFAVVPNVREALAYLSDFFYRSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGIGCGFIG 143

Query: 142 S---------YNNHIGVPLTL---------ARMPVDVDFGI-FELGMSHLGEIRFLTHLV 182
           +            +   P T          AR   + D  +  E+    L ++R     +
Sbjct: 144 TTGILRMDGKIPFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMR--VEGI 201

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R  +A+ T I+  HL      E    +K  +F   +++    +N DD   + +  +   +
Sbjct: 202 RFDVAIHTNISEEHLEYHKIFEHYLQSKLMLF---KQSKAAVVNVDD---KGMAKEILEV 255

Query: 243 GIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++       AD      +        ++  +G+   +     G + A N+   +
Sbjct: 256 ISYPHLTYSNRVDSGADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANLTAAI 315

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +   +++  +  L      EGR +  +   N+     +   Y   P ++ A   VL
Sbjct: 316 GSALLSGQNIEAIVTVLPKMSQVEGRFQVIQGPDNRK----VILDYAHTPVALSA---VL 368

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKD 416
           +++      R IA++  +   G    S    +A+         V             + D
Sbjct: 369 NEVKKLSHNRLIALIAGI---GIRDFSKMPKMAKAAEGKADVLVVTVDHPGDNEPSVVID 425

Query: 417 ALPRSIHVHYSETM-------DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-------- 461
           A+ +   V Y + +       + +   ++ S    D++++ SS S    +++        
Sbjct: 426 AVLKGFTVPYKQQVITANSRREAVLAALKES-GPEDIILL-SSGSINGAQIVKGEYIPHS 483

Query: 462 -NLLLEEF 468
              ++EEF
Sbjct: 484 DEAIIEEF 491


>gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
 gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
          Length = 458

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 163/440 (37%), Gaps = 46/440 (10%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            +   K  H  G D ++      +  V  N   + +     IPV     +L  L +    
Sbjct: 52  VYLGHKAEHIKGADVVVR-----SSAVEWNNPEIVAAREQMIPVIPRAAMLAELMRFR-- 104

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV 160
                    IA+ G+ GKTTT  +++  L+      +  IG   N +G+   L + P   
Sbjct: 105 -------HGIAVAGTHGKTTTTSLVSSVLAEGGLDPSFVIGGKLNSLGINAQLGQSP--- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
            + + E   S    +      ++P +A++T I   H+  + +  E++ +   E    L  
Sbjct: 155 -YFVVEADESDASFL-----FLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPF 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-- 277
            G+  +  DD     +         +   ++G ++ A ++   W Q    S   V     
Sbjct: 209 YGSAVVCIDDPEVRKILPFIE----RPTLTYGFTEEAHYRAIDWTQNELISEFTVIRPKS 264

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +++     G H   N L ++ I + L  D ++ I+AL  F     R +       + 
Sbjct: 265 YSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEK 324

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+ + Y  +P  + + I     + P+   R + V          +Q       +VLS
Sbjct: 325 GSALVVDDYGHHPQEILSTIDAFRHVWPNK--RLVHVF--QPHRYTRTQELQEQFVDVLS 380

Query: 398 L---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L         Y+     + G +  +L + +  +           L   +  S+ +GDV++
Sbjct: 381 LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVIL 440

Query: 449 VKSSNSCGFYRLINLLLEEF 468
           ++ + S G  ++   L++E 
Sbjct: 441 IQGAGSIG--QIAVNLMQEL 458


>gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2]
 gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAb1]
          Length = 469

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 160/432 (37%), Gaps = 51/432 (11%)

Query: 42  AFFAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F   +  + DG D   +  A+ +           VAS     IPV    ++L  L +  
Sbjct: 52  IFIGHQAENADGADVLVVSSAINR-------ANPEVASALERRIPVVPRAEMLAELMRYR 104

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMP 157
                      IA+ G+ GKTTT  ++    ++     T+   G  N       T A++ 
Sbjct: 105 ---------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLG 151

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
               + + E   S    +      ++P +AV+T I   H++ +     ++     E    
Sbjct: 152 AS-RYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHN 205

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-Q 275
           L   G   +  DD     +  +      +   ++G S++AD +    +Q   ++W  V +
Sbjct: 206 LPFYGLAVMCVDDPVVREILPQIA----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLR 261

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + + ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     
Sbjct: 262 PEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQV 321

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +V
Sbjct: 322 EGGSVMLVDDYGHHPREVAAVIKAIRGGWPE--RRLVMVY--QPHRYTRTRDLYEDFVQV 377

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  G
Sbjct: 378 LGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAG 437

Query: 445 DVVVVKSSNSCG 456
           D+++ + +   G
Sbjct: 438 DILLCQGAGDVG 449


>gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 492

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 169/479 (35%), Gaps = 51/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       V  I  DSR  AP  AF  I G   D H+F      KG
Sbjct: 1   MKLEQLLEGVPFTLVQGSLDTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
             ++V+  D+  S     + V  V+    A+  ++         + T+I +TG+ GKTTT
Sbjct: 61  VSVLVIQHDIDLS-AMPGVTVVKVESSRYAMALMSGNLFGNPSRQMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L +  K    IG+   +                      R  +D    +  + 
Sbjct: 120 THMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQFLDAGCDVALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      V   I V T ++P H+        EE  S K ++F   +      +N
Sbjct: 180 VSSQGLMMDRVAGVHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFRRCD---VGVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS-MEV 283
            DD   E L           + ++G+S+ AD++    +      ++ V   + G+  M+V
Sbjct: 237 IDDENTEALLEGHTC----KLVTYGRSEKADYRAEGCELLRTHDFLGVAFHVSGRDNMDV 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  L +  +L        +          +G+     +++ F  L+D
Sbjct: 293 RVNMPGEFSVYNALAALAVGKVLGLPDAAIHEG---LGKCVVKGRVELVPISKKFTILLD 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNIS 402
             Y  N  S ++ ++ L    PH   R + V G     G  S+     + E  +   + S
Sbjct: 350 --YAHNEVSTESLLTTLRAYHPH---RLVVVFGC---GGNRSKLRRYGMGETCAKMADFS 401

Query: 403 HVWLSGFHVLALKDAL--------PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKS 451
            +         ++D L          +    + E  D      +      +GD++ V  
Sbjct: 402 ILTEDNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIG 460


>gi|148265984|ref|YP_001232690.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
 gi|189028991|sp|A5G8J9|MURC_GEOUR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146399484|gb|ABQ28117.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
          Length = 458

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 152/433 (35%), Gaps = 50/433 (11%)

Query: 56  FILHAVQKGAGLVVV--------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA +  A + VV        +   V       IPV    ++L  L ++         
Sbjct: 54  FIGHARENVANVDVVVISSAVHDDNPEVVEAMERLIPVIPRAEMLAELMRMKYG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   L+         G  +  I +   L  +  +   G  + 
Sbjct: 108 ---IAIAGTHGKTTTTSMVATILAK--------GGIDPTIVIGGRLNSIGTNARLGQGQF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            ++   E       + P IAV+T I   HL  +  I+EI     +    +   G   L  
Sbjct: 157 LVAEADESDGSFLKLSPTIAVVTNIDADHLDFYKDIDEIKDTFVQFINKVPFYGLAVLCL 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D+     +      L  K   ++G S  ADF+    +     +      +G  + E+   
Sbjct: 217 DNGNIADII----PLVKKRFNTYGLSTQADFRATDVRHTGFTTSFVAHYKGTLLGEITFS 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L T+ +   L           + F    G G+R++         ++D+ Y
Sbjct: 273 MPGAHNVLNALATIAVAMELNIPFAEI---QAGFKAFGGVGRRFQVKGEVRDIMVVDD-Y 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSL 398
             +P  ++A ++     +  G  RR+ V           + F          D+  +  +
Sbjct: 329 GHHPTEIRATLAA----AKGGWDRRLVVAFQPHRYSRTKELFEEFVKAFYDADILILTDI 384

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y      + G    +L   + R     V Y    + +   +   +  GD+V+   + +  
Sbjct: 385 YPAGEKPIEGITAESLAARIKRHGQKDVTYIADRNAVCDHLLGIVKPGDIVITLGAGNI- 443

Query: 457 FYRLINLLLEEFP 469
            +++   L+E+  
Sbjct: 444 -WQVGETLVEKLK 455


>gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct]
          Length = 477

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 158/435 (36%), Gaps = 44/435 (10%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           E F A+KG   DG+ +I   + KG  LV+ ++            VF + ++   L+ LA 
Sbjct: 26  EVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFEDQKR----VFYIQNLKEKLSTLAK 81

Query: 101 AARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-- 157
                 K   II ITG+ GKT+    +   L    +    +G+  N I   L  +     
Sbjct: 82  WFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTL 141

Query: 158 ------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                        +    + E+    L + R     +   +A+ + ++  HL     ++ 
Sbjct: 142 DILSLYKTISYYKNYQNLVMEVSSHSLDQKR--VEGLDFDVAIFSNLSHDHLDYHKTMDN 199

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK 264
              AKA++F+  ++     +N DD + + L   +       + +   KS+ AD  ++   
Sbjct: 200 YFEAKAKLFQF-KRLKKAIINIDDEYGQRLCNMTQV----PVITVSLKSEYADVYIKPKS 254

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               ++  E+   G+ + E     IG     N+ ++   +  +  D D  +   ++   K
Sbjct: 255 IEGIKTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGV-LDWDCILDLGNI---K 310

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             +G+     L+     +ID  Y   P +++ A+  L+  +P+       + G       
Sbjct: 311 PVKGRMEVIELDNDIKIVID--YAHTPDALEKALQTLNSYNPNN---LWCIFGCGGNRDT 365

Query: 384 LSQSFHIDLAEVLSLYNI-----SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
             +     +AE  +   +     +           ++          +  + +    F  
Sbjct: 366 SKRPIMAQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSI 425

Query: 439 SSLVDGDVVVV--KS 451
            +   GD++++  K 
Sbjct: 426 ENANQGDIILLASKG 440


>gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 514

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 158/483 (32%), Gaps = 47/483 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A Q  ++       +  +  DSR +    AF A+KG   DGH ++  A   GA 
Sbjct: 7   LDALRDAGQLRAVNGALPVSIVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGAT 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L +V  +  A +  +  P   V D     AL   A            A+TG+ GKTTT  
Sbjct: 67  LAIVEDEAAARVIDM--PAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVG 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT------------------LARMPVDVDFGIFE 166
           +L   L    +  A IG+    IG                      + R+  D       
Sbjct: 125 LLRHLLDVAGQRAASIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVA 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S     +     V    AV T +   HL     +E    AK E+   L   G    N
Sbjct: 185 METSSHALHQHRVDGVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAPDGVACFN 244

Query: 227 YDDSFFELLKAKSHALGIK----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----G 278
            DD  ++   A+    G +       +F   ++AD         +  S  E++++     
Sbjct: 245 IDDVTWQHTVAEMDVSGSQASAPRRTTFSALQDADVTAHDVVYDATGSRFELRVRTAQGT 304

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +V    IG     N L        +          LS      GR +R R       
Sbjct: 305 TQHQVTLPLIGDFNVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEPT--- 361

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEV 395
              +   Y   P +++ A+  +   +   +G   R I V G   +     +     +AE 
Sbjct: 362 ---VLRDYAHTPDALERALLAVRPFTMRPDGAPSRLIVVFGCGGDRDRGKRPVMGSIAER 418

Query: 396 LSLYNI---SHVWLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L+   I    +         +  ++  + R  H    +  D +   ++      DVVV+ 
Sbjct: 419 LADVTIVTSDNPRTEDPERILDDIEAGMTRRDHQRIVDRRDAIAAALR-MASAHDVVVLA 477

Query: 450 -KS 451
            K 
Sbjct: 478 GKG 480


>gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
 gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
          Length = 487

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 162/471 (34%), Gaps = 47/471 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + L+ ++   +       V+ +  DSR  A    F  ++G + D H FI   +QKG
Sbjct: 1   MKLREWLKEMEYELLQGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
           A ++V    +        I V  V +   AL+ L+ A       K T I +TG+ GKTTT
Sbjct: 61  AKVLVTEEAVTVPEE---ITVLRVGNGRNALSLLSAARFGYPARKMTTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPV------------DVDFGIFELG 168
             M+   L +  +    IG+    I      T+   P             +       + 
Sbjct: 118 TYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKMVEQGCRYMVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +      +    ++   I+  H+     +  EE    K  +   L+ +    +N
Sbjct: 178 VSSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLL---LQNSRVCLVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD  +  +   + A     I +F    +ADF+    K   E  ++ +  +     E   
Sbjct: 235 RDDGHYREIIEGAKA----EIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEGDYESRL 290

Query: 286 --HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N +   G+ S L    +    AL           R          T+I 
Sbjct: 291 RVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQVDG----RMEIVYKSAKCTVIV 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  N  SM++ +  L    P    R + V G         +    ++   L+  +I  
Sbjct: 347 D-YAHNAVSMESLLMTLRDYKPK---RLVVVFGCGGNRARDRRYSMGEIGGKLADLSIIT 402

Query: 402 ---SHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVV 447
              S    +   +  +K  L R+    + E  D      +  S   +GD++
Sbjct: 403 ADNSRFEKTSDILADIKTGLSRT-EGKFIEIPDRREAIEYSLSHAQEGDII 452


>gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
 gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
          Length = 458

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 152/412 (36%), Gaps = 41/412 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +    +  IP+    ++LG L K             IA++G+ GKTTT  M
Sbjct: 77  AAISRDNPELIEAVARKIPMLTRAELLGQLMKNY--------KNPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G+ +  I V   L  +  ++  G  E  ++   E         P 
Sbjct: 129 ISHIL--------LEGNLDPTISVGGILQAIGGNIRVGNSETFITEACEYTNSFLDFYPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VI  I   HL  F  +E+I  +  +    L   GT+ +N   S  +  +     L   
Sbjct: 181 ISVILNIEEDHLDFFKDLEDIRHSFHQFASLLPPDGTLVIN---SNIQNYEEICSGLNCG 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIV 303
            I ++G S  +D+  +      +     ++  +G   E  V    G H   N L ++ + 
Sbjct: 238 -IITYGSSPKSDYSAQNISYDDKGCVSFDLLRKGIPAEHVVLSVTGDHNVSNALASIAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L    D   K L  F    G  +R+         T++D+ Y  +P  + A +      
Sbjct: 297 ELLDIPSDMIQKGLISFS---GTDRRFEYKGTLNGTTIVDD-YAHHPTEIAATLKAAQHY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  E   LS + H+ LA++ +      + +S   +   
Sbjct: 353 PHQGLWCVFQPHTYTRTKAFFHEFAE--ALSHADHVVLADIYAARETDTLGISSSDL--A 408

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++ L      HY    + +  F++ +   GD+++   +       +   LL+
Sbjct: 409 QELLNLGTDSHYFPCFEEIENFLKKNCKPGDLLITMGAGDV--VNIGEALLK 458


>gi|304440543|ref|ZP_07400430.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371021|gb|EFM24640.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 462

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 169/439 (38%), Gaps = 48/439 (10%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           +     K  + DG D +++        + ++ + +       I +      LGAL K   
Sbjct: 58  DIHIGHKKENIDGADLVIYT-----DAISLDNEELREAIKQKIDIVDRASFLGALMKNY- 111

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI+G+ GKT+T  M++  + ++             I +   L  +  +V
Sbjct: 112 -------KISMAISGTHGKTSTTSMVSEIIRNL--------PERPTILLGGKLDDINGNV 156

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E+ ++   E +       P  AVI  I   HL  F  +E I +      + L+  
Sbjct: 157 LVGNREIMLTEACEYKANVLKYFPTTAVILNIDEDHLDYFDNMEHIVNTFKGYADNLKPG 216

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGK 279
            T+ LN DD +   L+ + +     T+ +FG   +AD+  +  K C +     ++  +G 
Sbjct: 217 STLILNIDDPYVRELQNRDNT----TVVTFGVENDADYTAKNIKFCEDGYPEYDLYYKGS 272

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + +V+   +G H  +N L  +            AI      H  +G  +R       G 
Sbjct: 273 LIGKVILSVLGIHNIKNSLAAIACAHENNISFKDAIDG---IHSYKGVHRRLEFKGMFGG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
             + D+ Y  +P  + A++  + +           PH   R   +L    +    S++ +
Sbjct: 330 AKVFDD-YAHHPTEILASLHAIKRGCERNLYCIFQPHTFTRTKILLDSFSK--SFSEADY 386

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVV 448
             + ++ +     +      H   L DA+ ++     Y ET   +  F++ +L  GD VV
Sbjct: 387 TIITDIYAAREKDY---GDIHSKTLVDAINQNKDKALYIETFRDIVKFLKDNLRPGDTVV 443

Query: 449 VKSSNSCGFYRLINLLLEE 467
              +     Y++  +LLEE
Sbjct: 444 TMGAGDV--YKIGEMLLEE 460


>gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 153/456 (33%), Gaps = 50/456 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+++DSR + P + FFA+ G   DG  FI  AV        V      +     +P 
Sbjct: 21  EVTGVALDSRVVRPGDLFFALAGSKTDGARFIDAAV----AAGAVAIVGDHAPDGCKVPF 76

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN- 144
             V +   AL   A        ATI A+TG+ GKT+           +    A IG+   
Sbjct: 77  IAVANPRRALALAAARFFPAQPATIAAVTGTSGKTSVAAFTRQIWERLGHASASIGTIGL 136

Query: 145 ----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          P+ L R   +     V    FE     L + R     VR      
Sbjct: 137 VSPKRTVYGSLTTPDPIALHRQMDEIAREGVTHLAFEASSHGLDQYRL--DGVRVSAGGF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT-- 246
           T ++  H+     +    +AK  +F  L    G   ++ D          + A G++   
Sbjct: 195 TNLSRDHMDYHPTVAHYLAAKLRLFRELVPPGGAAVISADHDCSAEAIDAAKARGLRVMA 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G       +L +         + V+ +GK   V+    G    +N L++ G+    
Sbjct: 255 VGRNGDGAGEGIRLTEVGVDGFSQKLTVEHRGKRYVVLLPLAGEFQVENALVSAGLAIGT 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            +D      +L      +GR +R      +     I   Y   P ++  A+  L    P+
Sbjct: 315 GSDAANVFASLEHLEGAKGRLERV----GERNGAPIFVDYAHKPDALAKALQALR---PY 367

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
            + R + V G     G+        + E+ +  N   V ++  +  + +   P +I    
Sbjct: 368 AKRRLVVVFGA---GGDRDAGKRPIMGEIAAE-NADGVIITDDNPRSEQ---PEAIRAAI 420

Query: 427 SETMDGLFLF---------IQSSLVDGDVVVV--KS 451
             T  G                 L  GD +++  K 
Sbjct: 421 LATAKGAREIGDRAAAIRAAIEELEQGDALLIAGKG 456


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 164/421 (38%), Gaps = 40/421 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTT 121
           +GA  +VV+T +          V    D+    L++  + A L ++   IA+ GS GKTT
Sbjct: 70  RGADAIVVSTAIPYDNPE----VIAAWDLRIPKLHRSDINAALVNEYDGIAVAGSHGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+ + L  +          +  I V   +  +  +   G     +S   E       
Sbjct: 126 TTSMIGVTLDRVG--------VSPTIIVGGEVPDLGTNAKLGTSRYLVSEADESDGSFLK 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RPHIAV+T +   H+ ++  +E+I +A  +  E ++  GT  L +++     +  ++  
Sbjct: 178 LRPHIAVVTNVEDDHMDHYGTMEKIIAAFRQFIEQVDTDGTAVLCFENEILRNIARETA- 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
                + S+     AD++    +         V  +G  M  V+ +  G H   N L  +
Sbjct: 237 ---HKVVSYAIDHEADYRASNIETRGSVISFSVHERGTEMGRVLLNIPGRHNVLNALACI 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +   +      AL+ FH   G  +R++    +    ++D+ Y  +P  +   ++  
Sbjct: 294 AVARLAGVEFPAICDALAQFH---GAKRRFQTKGKERGVWVVDD-YAHHPTEIAVTLAAA 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVL----- 412
            Q +P    R I V          +Q    +  +  +  +   I+ V+ +G   +     
Sbjct: 350 RQTNPE---RLICVF--QPHRYSRTQLLRAEFGKCFADADLLLITDVYAAGETPIPGISG 404

Query: 413 --ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              +++ + +    V Y      L  ++   +  GD+V+   + +     +   L+ +  
Sbjct: 405 ETVMEEVVRQTGQDVVYLPDRADLERYLAQQVRAGDLVITMGAGNI-LE-VGETLVAQLR 462

Query: 470 A 470
           A
Sbjct: 463 A 463


>gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 514

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 154/451 (34%), Gaps = 39/451 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  + P + +  ++G    G  F   A   GA  V+ + D +A      +PV  
Sbjct: 40  TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDGLAEARDSGLPVIL 99

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL  +A        + AT+  +TG+ GKT+   +L   L  +        +   
Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159

Query: 146 HIGVPLTLARMPV--------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            IG     +R+                + +     + +S     R     +   +A    
Sbjct: 160 RIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDVAAFIN 219

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL +++  EE   AKA  F+  ++     ++ D  + + +  +S      T  S  
Sbjct: 220 LSHDHLDDYADFEEYFEAKAAFFDP-DRARRGVVSLDTVWGQRIVEQSRIPM--TTISAQ 276

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               AD+++   +Q  + +   ++    + +       G+ MA N  + + ++     D+
Sbjct: 277 PGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVMLVESGYDL 336

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D     L      +         ++     L    Y   P + +  +  L    P   G+
Sbjct: 337 DAVAHVLDRDGGIQAYIPGRAERVSGDTGPLFFVDYGHTPDAFEQTLQALR---PFTPGK 393

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------------ALKDAL 418
            + V G     G+   +   ++  + +      V ++ +H              A   A 
Sbjct: 394 LVMVFGA---DGDRDTTKRAEMGAIAARL-ADVVVITDYHPRYEDPASIRASLIAGARAA 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +H             S + +GD ++V
Sbjct: 450 VPDREIHEVPDPATAIRTAVSLVGEGDTILV 480


>gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 509

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 167/470 (35%), Gaps = 47/470 (10%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
               +       ++G+  DSR + P   F A++G   DG+ +I  A++ GA  +V  TD 
Sbjct: 9   GAEILSCSGNAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAVAIV--TDS 66

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
              I    +          AL++L+         K  I  +TG+ GKTTT  +L   L  
Sbjct: 67  ATEIPRPGVAWAICAHGRRALSRLSANFYKHPAEKLAITGVTGTNGKTTTTYILDSLLRH 126

Query: 133 IKKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFELGMSHLGEIR 176
             +  A IG+   HI             PL L +     +       + E+    L +  
Sbjct: 127 AGRKTAMIGTVEYHIADRVIPAPHTTPEPLELNQIFREALNEGATEAVMEVSSHALAQ-- 184

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFEL 234
                +   +AV T +   HL     +E    +KA +F+G   E      +N DD + E 
Sbjct: 185 ERVFGIPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPPRVGIINRDDEWAEK 244

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               ++    K +Y++G +   DF     +  S  +  ++      + +    IG     
Sbjct: 245 FMKVANKHCDK-VYTYGFAAG-DFHAENAEMTSTGTRFDLVTPEGRVPIFSPLIGKVNVL 302

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L            +D+   A S+ H     G+  R +  Q F  ++D  Y     +++
Sbjct: 303 NLLAAAAAAMERGIHLDSL--AESITHIVRPPGRFERVSAGQPFTVIVD--YAHTDDALR 358

Query: 355 AAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +        G GR I + G     G+  ++    + +         V L+  +  +
Sbjct: 359 NVTKLARDFVQQAGGGRVITLFGC---GGDRDKTKRPLMGKAAGE-GSDLVVLTSDNPRS 414

Query: 414 ------LKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + D LP      I                ++   GDVV++  K 
Sbjct: 415 EDPQAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVVILAGKG 464


>gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 178/465 (38%), Gaps = 48/465 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            + G      V+ ++ DSR +A    F A+ G   DG  F   A Q+GA  V       A
Sbjct: 11  EAAGPAADLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAAQAAQRGAAAVAGEGTRPA 70

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +    +    V D   AL   A         T++A+TG+ GK++  + +   L+ + + 
Sbjct: 71  DLPDA-VAWIPVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFVRQILARLGRD 129

Query: 137 YACIGSYN---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            A +G+                 + + +  TLAR+  +    +     SH  E R L   
Sbjct: 130 AASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAEGVTDLAMEASSHGIEQRRL-DG 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240
           VR   A  T +   HL   + IEE  +AK  +F + L       +N D ++ E + A + 
Sbjct: 189 VRLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAYAERVIAAAE 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G + + + G+    D ++   +         V   G++ ++    +G    +N L+  
Sbjct: 249 AAG-RPVRTVGRGGR-DLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQVENALVAA 306

Query: 301 GIVS---ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           G+        AD D    AL       GR +R      +G   L+D  Y   P ++++ +
Sbjct: 307 GLALATPAGAADPDGVFAALDHLTGVPGRMER--IGEARGGLCLVD--YAHKPEALESVL 362

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------ 411
           + L    P   GR +AV G   +     +     +A+ L+      V ++  +       
Sbjct: 363 TALR---PFATGRLVAVFGCGGDRDRGKRPLMGAIAQRLA----DVVIVTDDNPRTEDAA 415

Query: 412 ---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               A+ DA P +  +              S L  GDV+VV  K 
Sbjct: 416 AIRRAILDAAPGAEEIG---DRSEAIHSAVSRLGPGDVLVVAGKG 457


>gi|332974212|gb|EGK11145.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella kingae ATCC 23330]
          Length = 468

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 155/436 (35%), Gaps = 50/436 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            H DG + ++      +  +      V +  +  IPV     +L  L +L          
Sbjct: 60  EHIDGAEVVVT-----STAIAHENPEVQAALAQHIPVIPRAMMLAELMRL---------K 105

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  +    L +              IG  LT A     +  G + + 
Sbjct: 106 DGIAIAGTHGKTTTTSLTASILGAAGLDP------TFVIGGKLTAAGTNAKLGKGEYLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +   +  +  A  +    +   G  FL  
Sbjct: 160 EADESDASFL--YLSPVITVITNIDEDHMDTYGQDVNRLHQAFIDFVHRMPFYGKAFLCI 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKS----ME 282
           D      + +K      K   ++    + AD      +    Q    V  + +S     +
Sbjct: 218 DSEHVRTILSKIK----KPFATYAIDNDQADIYATNVQTNGAQMQFTVNFRHESSLQSFD 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           V  +  G H   N L ++G+     A V    + L+ F     R + Y   AL QG   L
Sbjct: 274 VTLNLPGRHNVLNALASIGVALECKAPVAAIQQGLANFAGVGRRFQSYGEIALPQGGKAL 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           + + Y  +P  M A I+      P+       VL         ++       +VLS  + 
Sbjct: 334 VIDDYGHHPVEMAATIAATRGAYPNNR----LVLAFQPHRYTRTKDLFYQFVDVLSTADR 389

Query: 401 --ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G   +   +A  L  ++         Y   ++ L   + S L DGDVV+  
Sbjct: 390 VVLTEVYAAGEAPIPDANAHSLANAVRARGLVEPIYCADINALPSILLSVLKDGDVVLTM 449

Query: 451 SSNSCGFYRLINLLLE 466
            + S    R    L++
Sbjct: 450 GAGSIN--RTAQALVD 463


>gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
 gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
          Length = 495

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 158/455 (34%), Gaps = 44/455 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D   + G +     
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHAHGQVEFREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I +TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 143 YNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N     L                 R   +       L  S  G ++     +     V
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI 247
            + ++  HL     ++  A AK  +F          +N DD+      K   HA+G+  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSE-HACQRAIINVDDAVGAQWVKQLPHAIGVSLL 265

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +       R+ +       ++        E+    IG   A N+L+ L  +  L 
Sbjct: 266 VQ--PNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPQLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A+ G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 377 AGQLWAIFGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMLAGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +   +    D++++  K 
Sbjct: 433 THPERAHIEHNRFHAASYALQNAGAQDIILLAGKG 467


>gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
 gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
          Length = 518

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 167/460 (36%), Gaps = 51/460 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVF 86
            +  D+RS+A  + FFA      D H FI  A+++GA  V+V  +  +     S ++ V 
Sbjct: 30  HLHADTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQPEGFSGAIDPSNTLAVP 89

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++++ G++               + ITG+ GKT+  + ++ AL+++    A IG+    
Sbjct: 90  ALNELAGSIASGW-YNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGTLGTG 148

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     IAV T
Sbjct: 149 LPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDIAVFT 206

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E   +AKA +F    +     +N DD+    L A +   G     ++
Sbjct: 207 NLTQDHLDYHQTFEAYEAAKARLFAW-PELRAAVINRDDAAGRRLLASTQ--GHARTIAY 263

Query: 251 GKS-----------KNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLM 298
           G              +A       +  +  +   +   +    EV    +G     N+L 
Sbjct: 264 GLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEVQTLGAFNVSNLLG 323

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG +       + A+  L+   P  GR +R      Q    L+   Y   P +++  + 
Sbjct: 324 VLGALLAADVPFEAALAELAKLEPVNGRMQRL-GGRLQNDEPLVVIDYAHTPDALEKTLE 382

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  ++    G  I + G   +     +     +AE ++      V L+  +  +     
Sbjct: 383 ALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKIA----DGVVLTSDNPRSEDPQS 438

Query: 414 ----LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
               +   +  +      E     +   I+S+  +  +V+
Sbjct: 439 IIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVL 478


>gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
 gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
          Length = 460

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 146/416 (35%), Gaps = 44/416 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V     L +PV    ++L  L ++            IAI G+ GKTTT  M
Sbjct: 72  SAVHDDNPEVVEAKRLHVPVIPRAEMLAELMRMKFG---------IAIAGTHGKTTTTSM 122

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               L          IG   N IG    L +       G F L  +   +  FL   + P
Sbjct: 123 AASILGHAGIDPTIVIGGKLNAIGTNAQLGQ-------GKFLLAEADESDGSFLV--LSP 173

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            IAV+T I   HL ++  GIEEI     +    +   G   L  DD     +  +     
Sbjct: 174 TIAVVTNIDADHLDHYSGGIEEIKDTFVKFINKVPFYGMAVLCLDDPNIRAILPRVK--- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
            K   ++G S  AD +    +     +      +G  + E+     G H   N +  + +
Sbjct: 231 -KRYMTYGLSSQADIRATHVRHDGFTTSFTAHFKGYRLGEISFTMPGAHNVLNAMACIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L        +  S F    G G+R+         T++D+ Y  +PA +KA    L+ 
Sbjct: 290 ALELDVPFSAIQEGFSRFG---GVGRRFTIKGEPRGITVVDD-YGHHPAEIKA---TLAA 342

Query: 363 ISPHGEGRRIAVLGDMCEM-------GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLAL 414
                  RRI  +             GE   +F+  D+  +  +Y      + G     L
Sbjct: 343 ARLGWPERRIVAVFQPHRYTRTHELFGEFVTAFYDADVLILTDVYAAGEQPVEGATAERL 402

Query: 415 KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLE 466
              + R     V +    + +   +   + +GD+V+   + S       L+ LL +
Sbjct: 403 SQEILRHGQKDVTWIPNRELIPQHLLGIVKEGDMVITLGAGSIWQQGEALVTLLEK 458


>gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
 gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
          Length = 508

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 56/473 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             I    +  + G++ DSR ++    FFA+ G H++G  FI  A+Q+G+ ++V   D+  
Sbjct: 21  QKIIGSCEVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDIDF 80

Query: 77  SIGSLSIPVFGVD--DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                ++    VD  ++   ++            K  II +TG+ GK++    +   L S
Sbjct: 81  Y--DSNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKS 138

Query: 133 IKKTYACIGSYNNH------------------IGVPLTLARMPV-DVDFGIFELGMSHLG 173
           +      I +                        + L L++M   +V++ I E     L 
Sbjct: 139 MGAKVGFISTVFLEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHGLD 198

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFF 232
           +       +   +AV+T I+  HL     ++    AK  +F       G   +N DD+ F
Sbjct: 199 DRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHGGFGIINMDDNHF 258

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +         I   Y++  K++ ADF + K  +    +  E            +  G  
Sbjct: 259 SVFMN-----SINRTYTYSLKNEKADFFISKINEQMGFTEFEFYHNKIKYAARVNLTGSF 313

Query: 292 MAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             +N++  L +VS I+  D+   I  L       G   R +       F+LI + Y   P
Sbjct: 314 NVENVMAALIVVSQIMNVDISKLICKLINIESLYG---RMQDINFGQDFSLIVD-YAHTP 369

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +      +  +++   + R I+V G   E   L +    ++A+  S      + L    
Sbjct: 370 GAFLKMFPIFKRLA---KKRLISVFGSAGERDILKRRLQGEIADEYS----DVIILCDED 422

Query: 411 ------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 +  ++D          +  + +            +     D+VV   
Sbjct: 423 PRGEDSMQIIRDIAEGIVTKTLNKDLFFIPDRKCAIEKAINIACSDDLVVTLG 475


>gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 161/477 (33%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
              HDLL    G + G  P+     V+G+++DSR++ P + FFA+ G   DG  FI  A+
Sbjct: 1   MKLHDLL----GDAAGRDPEIAAVDVSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAI 56

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
                  +          +LS+P   + +   AL   A     R  ATI A+TG+ GKT+
Sbjct: 57  A---AGAIAVAGGSPPGTALSVPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVD-----VDFGIF 165
                      +  + A IG+                  P+ L R   +     V    F
Sbjct: 114 VAAFTRQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAF 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIF 224
           E     L + R     VR      T ++  H+     +    +AK  +F  L    G   
Sbjct: 174 EASSHGLDQYRL--DGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGAAV 231

Query: 225 LNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           ++ D      + A + A  ++  T+ + G    A  +L           +++Q  G+   
Sbjct: 232 ISADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRMYT 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G    +N L+  G+     +D     +AL      +G   R           + 
Sbjct: 292 IRLPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKG---RLELVGEHNGAPIF 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P ++  A+  L    P+   + + V G   +     +     +A         
Sbjct: 349 ID-YAHKPDALAKALQALR---PYAARQLVVVFGAGGDRDTGKRPLMGAIA----AAEAD 400

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +          L  +                   L  GD +V+  K 
Sbjct: 401 RVIVTDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIKVAIGELQPGDALVIAGKG 457


>gi|325266252|ref|ZP_08132931.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
 gi|324982214|gb|EGC17847.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
          Length = 469

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 147/416 (35%), Gaps = 45/416 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   V +  +  IPV     +L  L +L            IAI G+ GKTTT  + 
Sbjct: 73  AIKADNPEVQAALAQHIPVIPRAMMLAELMRL---------KDGIAIAGTHGKTTTTSLT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +              IG  LT A     +  G + +  +   +  FL   + P I
Sbjct: 124 ASILGAAG------MDPTFVIGGKLTAAGTNAKLGKGEYLVAEADESDASFL--YLSPVI 175

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            V+T I   H+  +   ++ +  A  +    +   G  FL  D      +  K      K
Sbjct: 176 TVVTNIDEDHMDTYGQDVQRLHQAFIDFVHRMPFYGKAFLCVDSEHVRSILPKIK----K 231

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTL 300
              ++  + + AD      +    Q       +        +V  +  G H   N L ++
Sbjct: 232 PFATYAIEDETADIYATNVRTNGAQMQFTAHTRHTGSVHEFDVTLNLPGRHNVLNALASI 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISV 359
           G+     A ++   + L+ F     R + Y   AL  G   LI + Y  +P  M + I+ 
Sbjct: 292 GVALECKAPIEAIQQGLANFAGVGRRFQSYGNIALPSGGEALIIDDYGHHPVEMASTIAA 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD 416
                P   GRR  VL         ++       ++LS  +   ++ V+ +G   +A  +
Sbjct: 352 TRGAYP---GRR-LVLAFQPHRYTRTKDLFYQFVDILSTADRVVLTEVYAAGEAPIADAN 407

Query: 417 A--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              L  ++         Y   +  L   + S L DGDVV+   + S    R+   L
Sbjct: 408 GHSLANAVRARGLVEPIYCADVQALPQTLLSILQDGDVVLTMGAGSIN--RVAQAL 461


>gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 539

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 168/466 (36%), Gaps = 55/466 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84
           V+G+++ S    P   F AI G    G  F   A++ GA L++ +           L +P
Sbjct: 58  VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFERRLGVP 117

Query: 85  VFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V +      L    + +   ++ T +A+TG+ GKTTT  ++  AL+S     +  G+
Sbjct: 118 VVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLCGT 177

Query: 143 YNNHI-----------GVPLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPHI 186
               +                +AR     D       + EL    L   R     +   +
Sbjct: 178 VETSVGPVSFEAVRTTAEAPVVARFLAATDQYHCGAAVIELSAHALSLNR--VDGIVFDV 235

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   HL  +  +E   +AKA +F   E +    +  DD +   L    HA    T
Sbjct: 236 AAFTNLQHDHLDYYGDMETYFAAKALLFTP-EHSRRGVVCVDDEWGRRLAD--HATVPVT 292

Query: 247 IYSFGKSKNADFQLRKW---KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             S    + AD+Q+R     K      +  V   G    V    +G    QN  + +   
Sbjct: 293 TVSALTHEAADWQVRNVTPDKSIGRTVFTLVSPDGSPHRVAMPILGDVNVQNTAVAIVSA 352

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++ AI ++       GR +  +     G   L+   Y   P +++  +    ++
Sbjct: 353 VSLGVSLEDAISSVENAPQIPGRME--KVNPTPGAQPLVIVDYAHTPEALEWTLRSTREL 410

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------- 413
           +    GR + V G     G+   S   +LA + +      +W++  +  +          
Sbjct: 411 TA---GRVVIVFGT---DGDRDASKREELAAIAA-READVLWVTDENPRSEDPQSIRDYL 463

Query: 414 ---LKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KSS 452
              +  A P    VH   T   D +   I  +    D V++  K +
Sbjct: 464 LRGIASARPDMHDVHEVTTCRRDAVRQAILDA-RAADTVIITGKGA 508


>gi|90020496|ref|YP_526323.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
 gi|109892735|sp|Q21MG8|MURC_SACD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89950096|gb|ABD80111.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
          Length = 474

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 163/431 (37%), Gaps = 47/431 (10%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F      + DG   +++     +  V      +       IP+    ++LG L +    
Sbjct: 63  VFIGHHATNVDGASVVVN-----SSAVESGNPELMEAREKRIPIVRRAEMLGELMRYR-- 115

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
                    IA+ G+ GKTTT  +++  L++ KK     IG   N  G    L     + 
Sbjct: 116 -------HGIAVAGTHGKTTTTSLISSILAAGKKDPTFIIGGLLNSAGSNAGLG----ES 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
            + + E   S    +      ++P ++V+T I   H+  +     ++     +    L  
Sbjct: 165 RYLVAEADESDASFLH-----LQPMVSVVTNIDADHMDTYEGDFSKLKQTFIDFLHNLPF 219

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +  DD     L         +++ ++G ++++D++    +Q   +   +V     
Sbjct: 220 YGLAVVCGDDPIVTELIPAIS----RSVVTYGFNEDSDYRAFDVRQDGSKLRFKVARPEG 275

Query: 280 --SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQ 336
             ++E+  +  G H   N    + + S    D D     L+ F     R + Y    +  
Sbjct: 276 LATLELFLNMPGKHNVLNATAAVAVASEEKVDDDAIQNGLANFMGVGRRFEIYGEFEVGA 335

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  EVL
Sbjct: 336 GPTAMLVDDYGHHPREVAATIAAVRDGWP--DRRLVMVY--QPHRYSRTRDLYEDFVEVL 391

Query: 397 SLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           S  +   +  V+ +G   +   D+  L R+I         + E ++G+   I+  +  GD
Sbjct: 392 STVDQLVLLEVYSAGEDPIPGADSRHLSRTIRTRGVVDPIFVEGVEGVPAVIKDIVQPGD 451

Query: 446 VVVVKSSNSCG 456
           +++ + + + G
Sbjct: 452 IIITQGAGNVG 462


>gi|269967384|ref|ZP_06181444.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
 gi|269827972|gb|EEZ82246.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
          Length = 485

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 157/432 (36%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVVRELIPRIS----RQVITYGFSEDADVRIEDYRQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D  AL R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDIG--KVAKQL 473


>gi|91228515|ref|ZP_01262437.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
 gi|91187949|gb|EAS74259.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
          Length = 485

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 157/432 (36%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVVRELIPRIS----RQVITYGFSEDADVRIEDYRQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D  AL R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDIG--KVAKQL 473


>gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS)
 gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 497

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 153/427 (35%), Gaps = 44/427 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72

Query: 78  IGSLS-------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            G          I  F + + +  L           +  II ITG+ GKTT  +++    
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRF-YKEPGKRLKIIGITGTNGKTTVTQLINQWS 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------IFE-------LGMSHLGEIR 176
           + +    A +G+  N     L                   + E       + +S  G I+
Sbjct: 132 TILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQ 191

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V  +IA+ T +   HL     +E+  SAK  +F    K   I LN DD + ++  
Sbjct: 192 HRVKEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLFS-THKVKKIILNADDQYGKIWL 250

Query: 237 AK-------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            K       +  +  +    +             +Q +   ++  +    +  +    IG
Sbjct: 251 KKLLNFYTVAVTIQNRKQKKYSTKW---INATNIEQNNNSIYITFESSWGTGRISSCLIG 307

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L++L  +  L   +   I       P +G   R          T I + Y   
Sbjct: 308 RFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQG---RMELFSYVKKPTFIID-YAHT 363

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P ++K  ++ +     H +     + G   E  +  +     +AE +S      V ++  
Sbjct: 364 PDALKKTLNAIHS---HYQRYIWCIFGCGGERDQKKRPIMGAIAEKMS----DKVIITND 416

Query: 410 HVLALKD 416
           +    K+
Sbjct: 417 NPRNEKE 423


>gi|91776620|ref|YP_546376.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
 gi|122985406|sp|Q1GZ02|MURC_METFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91710607|gb|ABE50535.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
          Length = 475

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 41/407 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +    +IP+     +L  L +             IAI G+ GKTTT  +
Sbjct: 72  SAVKDDNPEVVAARERNIPIIPRALMLAELMRFRQG---------IAIAGTHGKTTTTSL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+            +    +   L     +   G  E  ++   E       + P 
Sbjct: 123 IASILAEAG--------MDPTFVIGGRLEASGSNARLGTGEYIVAEADESDASFLHLTPI 174

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           I+V+T I   H+  +    E +  A  E  + L   G   +  DD     +  +      
Sbjct: 175 ISVVTNIDADHMDTYGHDFERLKGAFVEFLQRLPFYGMAVVCIDDPNVRAILPQIS---- 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
           K +  +G S+ A  +    +  + +    V ++ G   + +V  +  G H   N L  + 
Sbjct: 231 KQVMPYGFSEEARIRASNVQAENGRMHFTVTRINGVTTTFDVTLNLPGRHYVLNALAAIA 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVL 360
           + S L       IKAL+ F     R +RY       G +  + + Y  +PA M A I+  
Sbjct: 291 VASELNVPDGAIIKALAEFKGVGRRFERYGEVPARDGGYFTLVDDYGHHPAEMNAVIAAA 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA 417
               P   GRR  VL         ++    D  +VLS  ++   + V+ +G   +   D 
Sbjct: 351 RDAFP---GRR-LVLAFQPHRYTRTRDCFEDFVKVLSSADVVLLTEVYAAGEAPIVAADG 406

Query: 418 --LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             L R+I V       + ET   L   I     DGDVV+V  + S G
Sbjct: 407 RSLVRAIRVAGKVEPLFVETPQELPQSILDMAQDGDVVIVMGAGSIG 453


>gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
 gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
          Length = 499

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA  V+   D   + G +    
Sbjct: 30  VITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQVEYRE 89

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L+++A          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 90  AVPVMYLSELDQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 149

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 150 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 210 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 269 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 327

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 328 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 380

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 381 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 436

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 437 THPERAHIEHHRFQAASYALKHAGAQDIILLAGKG 471


>gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
          Length = 480

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 161/432 (37%), Gaps = 51/432 (11%)

Query: 42  AFFAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F   +  + DG D   +  A+ +           VAS     IPV    ++L  L +  
Sbjct: 63  IFIGHQAENADGADVLVVSSAINR-------ANPEVASALERRIPVVPRAEMLAELMRYR 115

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMP 157
                      IA+ G+ GKTTT  +++   ++     T+   G  N       T A++ 
Sbjct: 116 ---------HGIAVAGTHGKTTTTSLISSVFAAGGLDPTFVIGGRLN----AAGTNAQLG 162

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
               + + E   S    +      ++P +AV+T I   H++ +     ++     E    
Sbjct: 163 AS-RYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHN 216

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-Q 275
           L   G   +  DD     +  +      +   ++G S++AD +    +Q   ++W  V +
Sbjct: 217 LPFYGLAVMCVDDPVVREILPQIA----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLR 272

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + + ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     
Sbjct: 273 PEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQV 332

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +V
Sbjct: 333 EGGSVMLVDDYGHHPREVAAVIKAIRGGWPE--RRLVMVY--QPHRYTRTRDLYEDFVQV 388

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  G
Sbjct: 389 LGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAG 448

Query: 445 DVVVVKSSNSCG 456
           D+++ + +   G
Sbjct: 449 DILLCQGAGDIG 460


>gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
 gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
          Length = 515

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 169/479 (35%), Gaps = 54/479 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             + L  +Q H            +  D+RS+   +AFFA      D   FI  A+++GA 
Sbjct: 14  IAEALNWLQAHLQRGA------HLHADTRSLTAGDAFFAYAVDGADNRAFIDGALERGAA 67

Query: 67  LVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+V  +  +     S ++ V  ++++ G++               + +TG+ GKT+  +
Sbjct: 68  AVLVQPEGFSGAIDASTTLAVPALNELAGSIASAW-YGDPSDSMLTVGVTGTNGKTSCSQ 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELG 168
            ++ AL+++ K  A IG+    +   L               +LA++       +  E+ 
Sbjct: 127 WISAALTALGKRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVS 186

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L + R   +     IAV T +   HL      E   +AKA +F    +     +N D
Sbjct: 187 SHALHQGR--VNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFAW-PELRAAVINRD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQL-QGK 279
           D+    L A +   G     ++G           +A       +     +   +      
Sbjct: 244 DAAGRRLLASTQ--GHARTIAYGLDSAQQSAPQADASLLASNVRATPTGTAFHLSTSDWG 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + EV    +G     N+L  LG +       D A+  L+      GR +R      Q   
Sbjct: 302 NAEVEVQTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGRMQRL-GGRLQNDE 360

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+   Y   P +++  +  L  ++    G  I + G   +     +     +AE ++  
Sbjct: 361 PLVVIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKMA-- 418

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
               V ++  +  +         +   +  +      E     +   I+ +  +  +V+
Sbjct: 419 --DGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVL 475


>gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
          Length = 526

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 98/465 (21%), Positives = 166/465 (35%), Gaps = 55/465 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPV 85
            GI++ S        F AI G    G  F   A++ GA +V+ + D  A      L +PV
Sbjct: 46  RGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVPV 105

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D    + +L     A   ++ T +A+TG+ GKTTT  ++  A++S     +  G+ 
Sbjct: 106 IQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTV 165

Query: 144 NNHI-----GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             H+         T A  PV           +   G+ EL    L   R     +   +A
Sbjct: 166 ETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHALSLHR--VDGIVFDVA 223

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL  +  +E    AKA +F   E +    +  DD +   L  ++      T 
Sbjct: 224 AFTNLQHDHLDYYGDMENYFQAKALLFTP-EHSRHGVVCVDDEWGRRLAQQATVP--VTT 280

Query: 248 YSFGKSKNADFQLRKW--KQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            S    + AD+Q+R     Q   ++    V   G    V    +G    QN  + +    
Sbjct: 281 VSALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAV 340

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D+   I A+       GR +  +     G   L+   Y   P +++     L    
Sbjct: 341 SLGIDLADVISAIEDAPQIPGRME--KVNPTPGGQPLVIVDYAHTPEALE---WTLRSTR 395

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------------- 411
               GR + V G     G+   +    LA++ +      +W++  +              
Sbjct: 396 ELTSGRVVIVFGT---DGDRDATKREHLAQIAA-READVLWVTDENPRTEVPQEIRNYLL 451

Query: 412 LALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KSS 452
             +    P    V    T   D +   I ++   GD V++  K +
Sbjct: 452 RGIASVRPGMEDVTEVTTCRRDAVRRAILAA-EPGDTVIITGKGA 495


>gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 490

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 169/482 (35%), Gaps = 44/482 (9%)

Query: 5   WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   +   ++     +       ++GIS  +  +   + F   KG  +D H+ I   ++
Sbjct: 1   MTISTIASILKDQILKVNAPMDLEISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG         +V    +   P   V D      KLA           +    +     T
Sbjct: 61  KG-----AVAVVVEREVNFDAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGTNGKT 115

Query: 123 KE--MLTIALSSIK-----------KTYACIGSYNNHIGVPLTLARMPVDVDFG---IFE 166
               M+   L+S+                     +      +T+     +   G    F 
Sbjct: 116 TTTLMIYHMLTSMGVKGSALTTVLKNVLGKTYYEDITTPDAITVLSAMKENKDGGGRFFA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L +S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN
Sbjct: 176 LEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGFAVLN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E L    H    K   +FG S+NA+++L   +   E +   ++     ++V   
Sbjct: 236 ------ESLSDALHRRVRK--VTFGTSRNANYRLGNIEVSWEGTSFVLETPDGFLKVFTR 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A N    +  +  L  D     ++L  F   EGR +  + A   GF  ++D  +
Sbjct: 288 AIGDFNAYNAAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVD--F 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW 405
             +P +++  +  + +IS   +GR I V G         +      ++E+  +  ++   
Sbjct: 346 AHSPDALEKLLKNVRKIS---KGRVIVVFGAGGNSDRGKRPMMSRVVSELADVMILTTDD 402

Query: 406 LSGFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             G     + + L + +  +       +  + +   + +    GD VVV +      Y++
Sbjct: 403 PRGEDPEQIMEDLIKGVDKNKPYLVLFDRKEAIETAL-TIANRGDTVVV-AGRGHERYQI 460

Query: 461 IN 462
           I+
Sbjct: 461 ID 462


>gi|167622396|ref|YP_001672690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella halifaxensis
           HAW-EB4]
 gi|189082499|sp|B0TQN8|MURC_SHEHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167352418|gb|ABZ75031.1| UDP-N-acetylmuramate--alanine ligase [Shewanella halifaxensis
           HAW-EB4]
          Length = 489

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 151/407 (37%), Gaps = 44/407 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +   L IPV    ++L  L +             +A+ G+ GKTTT  ++
Sbjct: 89  AISADNPELVAAKELRIPVVRRAEMLAELMRYR---------HGVAVAGTHGKTTTTSLI 139

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                 +    T+   G  N+      T AR+     + I E   S    +      ++P
Sbjct: 140 ASIYGEAERDPTFVIGGLLNS----AGTNARL-GHSRYLIAEADESDASFLH-----LQP 189

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T I   H+  +   +E++ +   +    L   G   +  DD     L  +     
Sbjct: 190 MVSVVTNIEADHMDTYEGDLEKLKTTFVDFLHNLPFYGVAVVCIDDPIVRELIPRI---- 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGI 302
            + I ++G S +AD Q   +KQ        V+  G   + +  +  G H   N L  + +
Sbjct: 246 GRRIVTYGFSDDADVQALDFKQTGYSCEFTVKRAGLADLRLSVNLPGEHNVLNALAAIAV 305

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +    +    IKAL+ F     R ++    A ++G   L+D+ Y  +P+ + A I    
Sbjct: 306 ATEDDIEDAAIIKALAEFQGIGRRFQQIGEFATSKGEIKLVDD-YGHHPSEVAATIKAAR 364

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVL 412
              P    R + +          ++  + D  EVLS          Y      + G    
Sbjct: 365 LGWPE--RRLVMIY--QPHRYSRTRDLYEDFVEVLSQVDCLLMLDVYAAGEAPIPGADSR 420

Query: 413 ALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           AL  ++     V   +  + + L   +   L  GD+++ + + S G 
Sbjct: 421 ALCRSIRVRGQVEPVFVASTEQLETILPEILQGGDLLLTQGAGSIGL 467


>gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
 gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
          Length = 480

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 169/458 (36%), Gaps = 55/458 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G+++DSR++ P + FFA+ G   DG  FI  AV+ GA  VV      AS     +
Sbjct: 19  ELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFIEAAVKAGAVAVVTGHPHTAS-----V 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV   DD   AL   A     R   TI A+TG+ GKT+          S+    A +G+ 
Sbjct: 74  PVVVADDPRRALALAAAVVYPRQPRTIAAVTGTSGKTSVAAFTRQVWDSLGHNAASLGTI 133

Query: 144 NN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L R   +     V     E     L + R     VR    
Sbjct: 134 GIVSRHRNVYGSLTTPDPVALHRAIDELAGDGVTHLALEASSHGLDQHRL--DGVRITAT 191

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELL--KAKSHALGI 244
             T ++  H+     +E   + K  +F  L   G    +  D      +   A++H L +
Sbjct: 192 AFTNLSRDHMDYHPTVEHYLATKLRLFTDLAPEGAPAVIAADHEHSATVIAAARTHKLNV 251

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T+   G+      +L +         M V+ +G++  +    +G    +N L+  G+V 
Sbjct: 252 MTVGRQGEG----IRLVEAAIDGFGQRMTVEHRGQNWRLRLPLVGEFQIENALVAAGLVI 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D   A  AL      +G   R     ++    +  + Y   P ++  A+  L    
Sbjct: 308 STGGDAAQAFAALEHLEGAKG---RLELVGDRFGAPVFVD-YAHKPDALVKALEALR--- 360

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           P+ +GR + V G   +     +    ++A      +   V ++  +           A+ 
Sbjct: 361 PYAKGRLVVVFGAGGDRDAGKRPLMGEIA----ARHADTVIVTDDNPRSEDPAAIRAAIL 416

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +A P + ++              ++L  GDV+++  K 
Sbjct: 417 EAAPGAQNIG---DRAEAIRTAVAALAPGDVLLIAGKG 451


>gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 476

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 150/436 (34%), Gaps = 50/436 (11%)

Query: 56  FILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VV+      +   V +     IPV     +L  L +          
Sbjct: 67  FIGHQAENIVGASVVVISSAIHGDNPEVMAAKEARIPVIQRAQMLAELMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +            N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMVSMIYAEAGLD---PTFVNGGLVKSAGTNAHLGCSRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P I+++T I P H+       +E+          L   G   L 
Sbjct: 175 DESDASFLH-----LQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGLAVLC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD     L      L  + + ++G S+NAD+++  ++Q   Q    V    G+ ++V+ 
Sbjct: 230 ADDEVLMELV----PLVGRQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERIDVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        D  + AL+ F     R  +    +      ++ + 
Sbjct: 286 NVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    Q            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    AL  ++     V        + L   +   + DGD+++ + + 
Sbjct: 401 LDVYPAGEAPIVGADSKALCRSIRNLGKVDPILVSDTEQLGEVLDQIIQDGDLILAQGAG 460

Query: 454 SC-GFYR-LINLLLEE 467
           S     R L+    +E
Sbjct: 461 SVSKLSRQLVECWTKE 476


>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 503

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 160/431 (37%), Gaps = 43/431 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++   +L +    +         + G+ +DSR+I     F A+KG   DG  +I +A++K
Sbjct: 1   MYDSRNLYKLFIPYVFNNPTSPALTGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKK 60

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
           GA  V++ +    +I          IPV  V+ +   L+ +  +          +I +TG
Sbjct: 61  GASAVLLESWSDITISKKYSYHLNKIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTG 120

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNN---------------HIGVPLTLARMPVDV 160
           + GKTT   +L   +  + K  A +G+  N                I     L++   D 
Sbjct: 121 TNGKTTITHLLARWVQLLGKKSAVMGTLGNGMLNNMCLSNNTTCSSIDAQKILSQFVKDK 180

Query: 161 DFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              +  E+    L + R     +    A+ T ++  HL     + + + +K  +F+ L  
Sbjct: 181 ITFVAMEVSSHGLNQYR--VDALYFKAAIFTNLSHDHLDYHGNVMQYSMSKWRLFDELCV 238

Query: 220 TGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                +N DD     +   L         + +  F K K       K       + +   
Sbjct: 239 EKY-IINADDPVGCRWLYYLPQAIAVTITRNLPFFWKGKW--ICALKVNYHIHGTDITFD 295

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  +    +G     N+L+ LG + IL   +   +   S   P  GR + +R    
Sbjct: 296 SSWGHGVIHSQLLGEFNVSNLLLALGTLLILGYPLSLLVHTSSQLQPVAGRMEVFRS--- 352

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G+ T+I + Y   P +++  +  + Q   +  G+   V G     G+   S    +  +
Sbjct: 353 HGYPTVIVD-YAHTPDALEKVLISIRQF--YYWGQLWCVFGC---GGDRDPSKRALMGCI 406

Query: 396 LSLYNISHVWL 406
           +S Y   ++ +
Sbjct: 407 VSRY-ADYIII 416


>gi|262395258|ref|YP_003287112.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|262338852|gb|ACY52647.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 485

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 156/432 (36%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVIAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVVRELIPRIS----RQVITYGFSEDADVRIENYRQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D   L R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDVG--KVAKQL 473


>gi|254230417|ref|ZP_04923797.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|151937050|gb|EDN55928.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 484

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 156/432 (36%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVIAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S++AD ++  ++Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVVRELIPRIS----RQVITYGFSEDADVRIENYRQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D   L R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDVG--KVAKQL 473


>gi|225023733|ref|ZP_03712925.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
 gi|224943615|gb|EEG24824.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
          Length = 486

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 157/438 (35%), Gaps = 52/438 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           + GH      ++ G  +VV +T +      +       IPV     +L  + +       
Sbjct: 74  FHGH--AAEHIE-GVDVVVTSTAIKPDNPEVLAAREAGIPVIPRAMMLAEIMRFGQG--- 127

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IAI G+ GKTTT  +    L++              IG  LT A     +  G 
Sbjct: 128 ------IAIAGTHGKTTTTSLTASILTAAGLDP------TFVIGGKLTAAGTNAKLGGGQ 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
           + +  +   +  FL   + P I V+T I   H+  +   ++++  A  E    +   G  
Sbjct: 176 YIVAEADESDASFL--YLTPVITVVTNIDTDHMDTYDHSVDKLHQAFVEFVHRMPFYGKA 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
           FL  D      +  +      K   ++G  + AD           Q    V L  +S   
Sbjct: 234 FLCIDSEHVRAILPEIQ----KPFATYGLDETADIYADNVHSEGAQMCFTVHLNKRSIAP 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
            EV  +  G H   N L  +G+     ADV+   + L+ F     R + Y    L QG  
Sbjct: 290 FEVRLNAPGRHNVLNALAAIGVALECGADVEAIQRGLAGFGGVGRRFQSYGEIKLPQGGS 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  M A +S      P        VL         ++    D   VL+  
Sbjct: 350 ALVIDDYGHHPVEMAATLSAARGAYPESR----LVLAFQPHRYTRTRDLFEDFVRVLNTA 405

Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +   D  AL R++ V       Y   +  +   + + L DGD+++
Sbjct: 406 DAVVLTDVYAAGEEPIVAADSRALTRALRVAGKLEPIYCADVADMPATLLNMLQDGDLLL 465

Query: 449 VKSSNSCGFYRLINLLLE 466
              + S    ++   L +
Sbjct: 466 NMGAGSIN--KVPQALRD 481


>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 540

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 176/481 (36%), Gaps = 63/481 (13%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G+    +    ++G++  S++++  E FF + G  YDGH F   A  KGA  ++V  ++
Sbjct: 25  SGNIKQALDDIKISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVEREI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 + +    V++   AL+ L+            +I IT + GKTTT  M+   LSS
Sbjct: 85  PH----IPLLQVVVENSRRALSHLSAKFYQHPSKSMNMIGITSTNGKTTTTYMIDQILSS 140

Query: 133 IKKT--YACIG------------SYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRF 177
            K T     +             +    + +   LA M   ++++   E+  S L E+  
Sbjct: 141 NKPTGLLGTVIVKLGEETKESDLTTPESLDLQRYLASMKRKNINYCTMEVSSSGL-ELER 199

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           ++  V   IA+I  I+  H+      E   +AK  + E +++     +N D      +  
Sbjct: 200 VS-AVDYDIAIINNISRDHIDQHGSFENYFAAKQRLVEEIQEDKRAVINVDCENACKMIN 258

Query: 238 KSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG------------KSMEVV 284
            + A     + ++  K  +A   +      S  +  ++ +                 ++ 
Sbjct: 259 YTKA----KVITYSVKGIDATIGIDNLDLSSGSASFDLVINRGFSTLSGKWIKPGRFKIK 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N         +L   +      L+ F   E   +R++   ++ F  +  +
Sbjct: 315 LKVLGLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVE---RRFQLIFDKKFKII--D 369

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            + ANP +++  +  L ++  +      A+ G   +      +    L + L   N+  V
Sbjct: 370 DHFANPGNIEVTMETLGKMDFNNLKILYAIRGGRGKTVNEENT--KALIKWLKKLNLQEV 427

Query: 405 W------LSGFHVLA--------LKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVV 448
           +      + G             L       I V Y   +        I+  L  GDV++
Sbjct: 428 YVTSSDEIVGIENKVTMTERDTTLSLLKSAGIRVRYFSQLRSAIKSVIIERHLQTGDVLL 487

Query: 449 V 449
           +
Sbjct: 488 L 488


>gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
 gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
          Length = 506

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 160/465 (34%), Gaps = 52/465 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
           +  V  ++IDSR I   + F A+ G   DG  FI  A+  GA  V+   D +A+ G +  
Sbjct: 29  EHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSIANHGDIVE 88

Query: 83  ---IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              I +     +   L+ +     A+  ++  ++A+TG+ GKTT  ++L    + I    
Sbjct: 89  QDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQWANLIGYNA 148

Query: 138 ACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             +G+  N                I +P  L  +     DF   E+    L + R     
Sbjct: 149 GVMGTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLVQGR--VKA 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKA 237
           ++   ++ T ++  HL     +   A AK  +F    + G   +N DD     +   L  
Sbjct: 207 LQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE-HQAGIPVINADDDIGLSWLADLPN 265

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               +  K     G    A   L      ++   +       + +     +G     N+L
Sbjct: 266 AVAVVTDKARLGEGYQGQA-LWLTDVAYSTQGVNISFDSSWGAGQFTAPLVGSFNVSNLL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L  +  L   +D  I A        GR + ++    +    ++   Y   P +++ A+
Sbjct: 325 LALATLLALGHSIDKLIAAAPRLTAVIGRMEVFQ----RSDKPMVVVDYAHTPDALEKAL 380

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-- 415
             L     H +G+   + G   +     +    +++E L+      + ++  +       
Sbjct: 381 QALR---VHCQGKLWCIFGCGGDRDIGKRPMMAEISERLA----DQIIITDDNPRTEAPA 433

Query: 416 -------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    L                 +        D++++  K 
Sbjct: 434 GIVSDMLQGLTLPQQAQVIHDRKLACTYAIEHARANDIILLAGKG 478


>gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
 gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
          Length = 508

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 170/473 (35%), Gaps = 56/473 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             I    +  + G++ DSR ++    FFA+ G +++G  FI  A+Q+G+ ++V   D+  
Sbjct: 21  QKIIGSCEVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDIDF 80

Query: 77  SIGSLSIPVFGVD--DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                ++    VD  ++   ++            K  II +TG+ GK++    +   L S
Sbjct: 81  Y--DSNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKS 138

Query: 133 IKKTYACIGSYNNH------------------IGVPLTLARMPV-DVDFGIFELGMSHLG 173
           +      I +                        + L L++M   +V++ I E     L 
Sbjct: 139 MGAKVGFISTVFLEDGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHGLD 198

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFF 232
           +       +   +AV+T I+  HL     ++    AK  +F       G   +N DD+ F
Sbjct: 199 DRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHGGFGIINMDDNHF 258

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +         I   Y++  K++ ADF + K  +    +  E            +  G  
Sbjct: 259 SVFMN-----SINRTYTYSLKNEKADFFISKINEQMGFTEFEFYHNKTKYAARVNLTGSF 313

Query: 292 MAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             +N++  L +VS I+  D+   I  L       G   R +       F+LI + Y   P
Sbjct: 314 NVENVMAALIVVSQIMNVDISKLICKLINIESLYG---RMQDINFGQDFSLIVD-YAHTP 369

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +      +  +++   + R I+V G   E   L +    ++A+  S      + L    
Sbjct: 370 GAFLKMFPIFKRLA---KKRLISVFGSAGERDILKRRLQGEIADEYS----DVIILCDED 422

Query: 411 ------VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 +  ++D          +  + +            +     D+VV   
Sbjct: 423 PRGEDSMQIIRDIAEGIVTKTLNRDLFFIPDRKCAIEKAINIACSDDLVVTLG 475


>gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
 gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
          Length = 492

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 53/480 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   H +L+    H      +  VN + +DSR + P + F AIKG   DG  FI  A++ 
Sbjct: 1   MRDLHTILK----HLEIDAARLMVNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIEN 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121
           GA  ++   D +    S   P++ V ++   L  LA     +      ++ +TG+ GK+T
Sbjct: 57  GASAIIA--DRLCEFESDFEPLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKST 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFEL 167
           T  M+           A IG+        LT  +                 +    +  +
Sbjct: 115 TTAMIAHLAQFCHTQAAIIGTLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAM 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G ++          AV T ++  HL     ++    AK  +F   +    + LN 
Sbjct: 175 EVSSHGLVQHRVDQCYFKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRDFDAD-HVILNQ 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKS----KNADF-QLRKWKQCSEQSWMEVQLQGKSME 282
           DD   E    K       ++  +G+     KNA F      +  +     ++      + 
Sbjct: 234 DDGQAEQWIEK---YSFNSLICYGRKNLAPKNAQFVYFSDVQYSATGISAQLTTSWGDVA 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G     N+   L  +  L   +   +       P  GR +    A         
Sbjct: 291 IKSPLFGEFNLYNLTAALATLLALGYPLTQLVAGCEYLQPVAGRMQ----AFTAPSMPTC 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P ++      L  +  H  G    V G   +  +  +      AE  +     
Sbjct: 347 VVDYAHTPDALA---LALQALQQHVPGGVSCVFGCGGDRDKGKRVLMAQAAEQFA----D 399

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L    + H          F   +   G+V+++  K 
Sbjct: 400 KVIITSDNPRSEDPNDIINDVAAGLEHPENAHLEADRGAAIQFAIDNAKAGEVILIAGKG 459


>gi|302036133|ref|YP_003796455.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
 gi|300604197|emb|CBK40529.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
          Length = 460

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 151/421 (35%), Gaps = 48/421 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      V +  +  IPV    ++L  L +L            +AI G+ GKTTT  M
Sbjct: 72  SAVAATNPEVVAAKARQIPVIPRAEMLAELMRLKFG---------VAIAGAHGKTTTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+         G  +  + +   +  +      G  +L ++   E       + P 
Sbjct: 123 VANVLAQ--------GGLDPTMVIGGKVNALGSHARLGRGDLLIAEADESDGSFLRLAPT 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA +T I   HL ++  +E++  +  E    +   G   L  DD     L  +     +K
Sbjct: 175 IAAVTNIDREHLDHYGSMEKLNDSFLEFVNKVPFYGLAVLCSDDERLRNLLPRV----VK 230

Query: 246 TIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
              ++G  ++     DF+          S   V  +G+++        G H   N L+ +
Sbjct: 231 RYQTYGLHEHPGHVPDFRATDISLRQWGSEFRVFFRGRNLGPFRLSIPGIHNVSNSLVAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L   VD   K L+ F   E   +R+     +    ++D+ Y  +P  ++A I+  
Sbjct: 291 AIGMELDIPVDLIRKGLAAFSGVE---RRFHLRGEKAGIMVVDD-YGHHPTEVRATIAAA 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHV 411
            Q    G  RR+ VL         S+    + A              Y      + G   
Sbjct: 347 KQ----GWDRRVVVLFQ-PHRYSRSRDLMQEFAHAFDQADALFMTEIYAAGEQPIPGVSG 401

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             L +A+  + H    + E  D +   +  +L  GD+V+   +     ++    +LE  P
Sbjct: 402 AKLVEAVQAAGHPSATFVERKDTMAEQVLPTLKSGDLVITLGAGDI--WKTGLAILERLP 459

Query: 470 A 470
           A
Sbjct: 460 A 460


>gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
 gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
          Length = 488

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 156/449 (34%), Gaps = 45/449 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +  +  FFA+ G   +G D++   ++ G  + VV  ++        I +  V 
Sbjct: 29  LETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAELKLQRDD--IELVSVA 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D +  L     A   +  + ++A+TG+ GK++    +      I  +   +G++      
Sbjct: 87  DPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTFGVGPLD 146

Query: 150 PLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            L+ A+                    VDF  FE     L + R     V    AV + ++
Sbjct: 147 RLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRI--EGVPFQTAVFSNLS 204

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +   A AK  +F   E         DD +   +   +        Y   + 
Sbjct: 205 RDHLDYHGDMNSYALAKRRLFSF-ECVSHSIFCLDDGYAGFMAEGAARSSCH--YYSEQD 261

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             ADF +++           +   G    V    +G    QN L     +     D  T 
Sbjct: 262 SRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYGVDDKATL 321

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I+ LS      GR  + +         L+   +     +++ A+  + +   H  GR I 
Sbjct: 322 IRGLSTLTGAPGRMDKVQLP----NAPLVVVDFAHTADALEVALQAVKE---HTNGRLIC 374

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR-SIHVHY 426
           V G   +     +   +      ++ N  +VWL+  +           D L + +    +
Sbjct: 375 VFGCGGDRDRGKRPLMM----AAAMKNADYVWLTSDNPRTESIEQIFSDVLAQTNKDAAF 430

Query: 427 SETMDGLFLFIQSSLVDG--DVVVV--KS 451
           S  +D      Q+ L  G  DV+++  K 
Sbjct: 431 SFELDRRMAIHQAILSAGPEDVILIAGKG 459


>gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Rhodococcus opacus B4]
          Length = 496

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 141/457 (30%), Gaps = 46/457 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V GI+ DSR +   + + A+ G H  G +F   A  +GA  ++ +       
Sbjct: 27  LCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGAVAMLSDR------ 80

Query: 79  GSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            S  +P   V D    L  L   +         +  +TG+ GKT+T  +L   L +    
Sbjct: 81  TSDVLPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTNGKTSTVYLLDAGLRAAGAV 140

Query: 137 YACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              +                                +   G   + +S  G         
Sbjct: 141 AGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIGAVAMEVSSHGLALHRIDGT 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V T +A  HL     ++   +AKA +F+         +  DD F   L A    +
Sbjct: 201 SFRVGVFTNLARDHLDFHPDMDAYFAAKARLFDP-RHCAAAAIGIDDEFGRRLAA---TV 256

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  +    ++  AD            +   +   G  + V    +G H   N L  +  
Sbjct: 257 TVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGDRISVRLRLLGVHQVDNALAAIAA 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +   D   AI  +       GR +    A++ G        Y  N A  +     L  
Sbjct: 317 LVVRGVDPGAAIAGIEDLDTVPGRLE----AVDAGQPFFAFVDYMHNTAGQRRLFPYLRS 372

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDAL 418
           ++    GR IAV+G     GE        L    + +  + V             L++ +
Sbjct: 373 LTA---GRVIAVVGA---TGERDPGKRAPLGATAARFADAVVVTDESPYSEDAQRLREDV 426

Query: 419 PRSIH------VHYSETMDGLFLFIQSSLVDGDVVVV 449
            R         V              +    GDVVVV
Sbjct: 427 ARGARSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVV 463


>gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
 gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
          Length = 512

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 282 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 340

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 341 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 393

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 450 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|119897176|ref|YP_932389.1| UDP-N-acetylmuramate--L-alanine ligase [Azoarcus sp. BH72]
 gi|166222953|sp|A1K3U7|MURC_AZOSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119669589|emb|CAL93502.1| probable UDP-N-acetylmuramate-L-alanine ligase [Azoarcus sp. BH72]
          Length = 467

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 167/427 (39%), Gaps = 51/427 (11%)

Query: 53  GHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD   +     A      V  +   V +  +  IP+     +L  L +L          
Sbjct: 56  GHD-AANVEAADALVVSTAVKNDNPEVIAARARHIPIVPRAQMLAELMRLKSG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  ++   L+  ++  T+         IG  L  A     +  G F 
Sbjct: 108 --IAIAGTHGKTTTTSLVASILAEGAMDPTFV--------IGGRLNAAGANARLGKGDFL 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL  ++ P I+V+T I   H+  +      +  A  +  + L   G   L
Sbjct: 158 VAEADESDASFL--MLSPVISVVTNIDADHMDTYGHDFARLKQAFVDFLQRLPFYGVAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKS---M 281
             DD     +      L  K +  +G S+ A+ +    +    +   +V ++ G +    
Sbjct: 216 CEDDPHVRSIM----PLVSKQVVRYGLSETANIRAENIRAEGGRMIFDVLRVNGSTTRLA 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFT 340
           +VV +  G H  +N L  + + + +    +  +KAL+ F     R +RY   A   G   
Sbjct: 272 DVVLNLPGLHNVRNALAAIAVATEVQVPDEAIVKALAEFSGVGRRFQRYGEVAAPSGGTF 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + + Y  +P  M+A    L+       GRR  VL         ++    D  +VLS  +
Sbjct: 332 TLIDDYGHHPVEMEA---TLAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLSTVD 387

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + E + G+   +  ++ DGDVV+ 
Sbjct: 388 ALLLAEVYAAGEAPIVAADGRALSRALRVAGKVEPVFVEDIGGMPQAVLEAVRDGDVVIT 447

Query: 450 KSSNSCG 456
             + S G
Sbjct: 448 MGAGSIG 454


>gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Kitasatospora setae
           KM-6054]
          Length = 514

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 169/476 (35%), Gaps = 49/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L +A +   +  V    V G++ DSR++ P + + A  G ++ G  F   A   GA  V+
Sbjct: 22  LAEAARLLGLAGVEGPEVTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVAVL 81

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT 127
            +        +  +P+  VD    A+  LA A       +  +I +TG+ GKTTT  ++ 
Sbjct: 82  TDAAGAELAAAAGVPLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTTTSYLVE 141

Query: 128 IALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSH 171
             L    +    IG+    +                +   LA M     D  + E+    
Sbjct: 142 GGLRGAGRLPGVIGTVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVMEVSSHA 201

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R  T  V   +A+   + P HL     +E+   AKA +F+   K+     N DDS+
Sbjct: 202 LVYGR--TDGVVYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQQ-GKSRRGVANRDDSY 258

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGY 290
              L  ++      T +S      AD++    +     S   V    G+  +      G 
Sbjct: 259 GRRLAGEARIPM--TTFSAAGDPAADWRAVDVRPGPSGSTFRVLGPNGEQADAAVPLPGL 316

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L  +  + +   ++  A+  ++      GR +       Q +  ++D  Y   P
Sbjct: 317 FNVSNALGAITALVVAGVELADAVAGVAAVPGVPGRLE--EVDAGQDYVAVVD--YAHKP 372

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++ + ++ L +++   +GR   V+G     G+        +  + +    + V  S   
Sbjct: 373 DALSSVLASLREVT---KGRLHVVVGC---GGDRDPYKRGPMGAIAARLADTAVLTSDNP 426

Query: 409 --FHVLAL-------KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                LA+          +P                     S    GD V+V  K 
Sbjct: 427 RSEDALAILATMLSGAAEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKG 482


>gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
 gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
          Length = 491

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 158/479 (32%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++        +  V+ +  DSR +     F  I+G   DGH F+   ++KG
Sbjct: 1   MKVSTLLEGLKYICCQGSTEQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFVPDVIRKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A                 + V  V D   A+  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AK---TLVVEEEVEAPEDVTVIKVADTRYAMAFISAAYFGHPAEKLKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+   L +       IG+    IG     A              R  VD       + 
Sbjct: 118 TYMVKSILENAGYKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKMVDAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T        + T I P H+        ++    K+ +   L++     +N
Sbjct: 178 VSSQGLMLHRTQGFVFDYGIFTNIEPDHIGPNEHKDFDDYLRCKSML---LQQCRVGIVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD  FE +           + ++G S  AD +         + ++ +  Q K      V
Sbjct: 235 RDDEHFERIIEGHTC----QLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKGLMEFPV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + I        +  IKAL V   K     R         FTL+ 
Sbjct: 291 EIDIPGKFSIYNSLTAIAICRHFNVSQENIIKALKVARVKG----RIEVIKVSDEFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  ++++ ++ L +  PH   R + + G     G  ++S   ++ EV        
Sbjct: 347 D-YAHNAMALESLLTTLREYHPH---RLVCLFGC---GGNRAKSRRYEMGEVSGRLADLT 399

Query: 404 VWLSG-------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S          ++             Y E         +       GD++V+  K 
Sbjct: 400 IITSDNPRFEEPQDIIDDIKIGISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKG 458


>gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 467

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 148/413 (35%), Gaps = 49/413 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L IPV    ++L  L KL            IA++GS GKTTT  M
Sbjct: 74  SAVREDNPELRRAKELGIPVIPRGEMLAELFKLKEG---------IAVSGSHGKTTTTSM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L            ++  + +   L R+  +   G  +L +S   E       + P 
Sbjct: 125 VAHILEEAG--------FDPTVIIGGILQRLGSNAKLGRGDLLVSEADESDGSFLKLSPA 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I   H+  +  +E+I +A A+    +   G    N DD         + +   K
Sbjct: 177 VNVITNIDLEHMDYYRDLEDIVAAFAKFAGSVPFYGFCVANADDPNVR----NATSSVTK 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
            + +FG  K AD    +      +    V  +G+ +  +   I G H   N L    +  
Sbjct: 233 KLITFGIEKEADVVGTELSIEGGRYAFGVVFKGERLGKIRLSIGGRHNVYNALAATAVSL 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +    AL  FH  E   +R       G   + D+ Y  +P  ++A +S L ++ 
Sbjct: 293 ELGVPFEVVRSALEGFHNAE---RRMELKGFFGGVPIYDD-YGHHPTEIRAVVSALREMY 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALK 415
           P    R + V          +        EV         L +Y  S   + G     L 
Sbjct: 349 P--GRRLVMVF--QPHRYSRTHFLFDSFVEVLKLPDLLLMLDIYPASEKNIYGVDAREL- 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            AL       + E  + +   ++ +L +GDV++   +        I  L E+F
Sbjct: 404 -ALRSG--ATFVEEKENVLSLLEENLREGDVLLFMGAGD------ITRLCEDF 447


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 177/486 (36%), Gaps = 62/486 (12%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY--DGHDFI 57
           M+PL      L   + G   G  P                 E   A  G H   DG    
Sbjct: 24  MSPLAKILLQLGYTVSGSDTGDSPLI--------------GEL--ARLGAHVWTDG-QHA 66

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGS 116
            H   +GA  +VV+T +          V    D+    L++  + A L ++   IA+ GS
Sbjct: 67  EHV--RGADAIVVSTAIPYDNPE----VIAAWDLRIPKLHRSDINAALVNEYDGIAVAGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ + L  +  +   I      +    T A++     + + E   S    ++
Sbjct: 121 HGKTTTTSMIGVTLDHVGASPTII--VGGEVPDLGTNAKLGTS-RYLVSEADESDGSFLK 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +RPHIAV+T +   H+ ++  +E+I +A  +  E ++  G   L ++++    + 
Sbjct: 178 -----LRPHIAVVTNVEDDHMDHYGTMEKIIAAFRQFIEQVDTDGAAVLCFENANLRNIA 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQN 295
            ++     + + S+     AD++    +         V  +G  M  +  +  G H   N
Sbjct: 233 RETK----RCVVSYAIDYEADYRASDIETRGSLISFTVHERGAEMGHISLNIPGRHNVLN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  ++  +      AL+ FH   G  +R++    +    ++D+ Y  +P  +  
Sbjct: 289 ALACIAVARLVGVEFPAIRAALAQFH---GAKRRFQTKGKERGVWVVDD-YAHHPTEISV 344

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
            ++   Q +P    R I V          +Q    +            +  +Y      +
Sbjct: 345 TLAAARQTNPE---RLICVF--QPHRYSRTQLLREEFGRCFADADLLLLTDIYAAGEAPI 399

Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G     + + + +       Y      L  ++   +  GD+V+   + +     +   L
Sbjct: 400 PGISGETVMEEVAKQTGQDAVYLPDRADLERYLAQQVRAGDLVITMGAGNI-LE-VGEAL 457

Query: 465 LEEFPA 470
           + +  A
Sbjct: 458 VAQLRA 463


>gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
 gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
          Length = 457

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 156/435 (35%), Gaps = 48/435 (11%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            + F+   G +  G D ++      +  +  +   VA+     IPV    ++L  + +L 
Sbjct: 51  GKIFYGHDGKNIGGADVVVV-----SSAIAADNPEVAAAREAGIPVIPRAEMLAEILRLK 105

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV 158
                      I I G+ GKT+T  M+   L          IG     IG    L     
Sbjct: 106 Y---------SIVIAGAHGKTSTTSMVASVLGQGGMDPTVVIGGKLKSIGTNAVLG---- 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D+ + E   S    ++F      P IAV+T I   HL  +  +  I+ +  E  + + 
Sbjct: 153 HGDYIVAEADESDGSFLKF-----SPSIAVVTNIDREHLDFYPDLAAISKSFLEFLDRIP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  D+   + L         K   ++G S  AD Q R     + +    V  + 
Sbjct: 208 FYGVAVVCLDNEPLQALVPLIK----KRFITYGTSNQADLQARHITPINGKVRFSVVWRQ 263

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           + +  +     G+H  +N L  + +   L        +A        G  +R       G
Sbjct: 264 EELGTIDLGVPGFHNVRNALAAVAVGLELGLAFAVIKEA---LETMAGVQRRLEKKGETG 320

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-------GELSQSFHI 390
              ++D+ Y  +P  +KA    L  +  H E RR+ V+              + +++F+ 
Sbjct: 321 GVIVVDD-YGHHPTEIKA---TLQGVRQHWEDRRVVVVFQPHRYSRTKALFDDFTRAFYQ 376

Query: 391 -DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            D   VL +Y      + G    ++ + +    H  V Y E       +++  L  GD++
Sbjct: 377 CDELVVLPIYAAGEHPIDGVDGESVAEGIRAHGHKGVRYVEGRAEAVAYLKEILQKGDIL 436

Query: 448 VVKSSNSCGFYRLIN 462
           +   +     +R+  
Sbjct: 437 LTLGAGDV--WRIGE 449


>gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
 gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 463

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/425 (21%), Positives = 160/425 (37%), Gaps = 47/425 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA  VV +T +  S   +       IP+     +L  L +L            IAI G+
Sbjct: 63  AGADAVVTSTAVQESNPEVVAAREKKIPIVPRALMLAELMRLRQG---------IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L         +      IG  LT A     +  G F +  +   +  
Sbjct: 114 HGKTTTTSLVASILGEAGMDPTYV------IGGKLTAAGTNARLGQGDFLVAEADESDAS 167

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           FL   + P IA++T I   H+  +    + + +A  +  + L   G   L  DD+    +
Sbjct: 168 FL--YLTPVIAIVTNIDADHMDTYGHDFDRLKTAFVDFCQRLPFYGMAVLCIDDANVREI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQ 294
             +      K I ++G    A  +    +    Q    V+ +G   ++V  +  G H   
Sbjct: 226 LPRI----TKPITTYGFDPAAQVRAVDTRFEHGQMRFTVKREGMADLDVTLNQPGLHNVL 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM 353
           N L  + + + + A     +KAL+ FH    R +RY       G    + + Y  +P  M
Sbjct: 282 NALAAIAVATEVGASDAAIVKALAEFHGVGRRFQRYGEHPTKDGGCYWLIDDYGHHPVEM 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH 410
            A ++      P    R + V          ++    D  +VLS  +    + V+ +G  
Sbjct: 342 AATLAAARGAFP--GRRLVLVF--QPHRYSRTRDCFEDFVKVLSETDALVLTEVYPAGEA 397

Query: 411 VLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   D  AL R++ V       + E +  +   ++  +   DVV+V  + S G  ++  
Sbjct: 398 PIVAADGRALARAVRVAGKVEPVFVENVADVAATVRDLVQADDVVLVMGAGSIG--QVAP 455

Query: 463 LLLEE 467
            L E 
Sbjct: 456 ALGER 460


>gi|85058428|ref|YP_454130.1| UDP-N-acetylmuramate--L-alanine ligase [Sodalis glossinidius str.
           'morsitans']
 gi|109892741|sp|Q2NVV0|MURC_SODGM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84778948|dbj|BAE73725.1| UDP-N-acetylmuramate-alanine ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 490

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 138/407 (33%), Gaps = 47/407 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +   + IPV    ++L  L +             IAI G+ GKTTT  M+    +     
Sbjct: 97  AAKEVRIPVIQRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVASIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A+IT I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGCSRYLIAEADESDASFLH-----LQPMVAIITNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVIRELLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   +       Q K  + V  +  G H A N +  + + +    + ++ +
Sbjct: 256 ADLRITDYRQDGARGSFTFTRQEKADLRVELNAPGRHNALNAVAAIAVATEEGINDESIL 315

Query: 315 KALSVFHPKE------GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +A+  F          G           G   L+D+ Y  +P  + A I       P  +
Sbjct: 316 QAMLQFQGTGRRFDDLGHYDLVNVNGKTGEVMLVDD-YGHHPTEVDATIKAARAGWP--D 372

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALP 419
            R + V          ++  + D A VLS         +Y      + G    +L   + 
Sbjct: 373 KRLVMVF--QPHRYTRTRDLYDDFANVLSGVDVLLMLDVYPAGEAPIPGADSRSLCRTIR 430

Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V       M+ L   +   L D D+V+++ + + G  ++   L
Sbjct: 431 GRGKVDPILVPDMETLPATLAQVLQDNDLVLMQGAGTVG--KIARKL 475


>gi|294142803|ref|YP_003558781.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
 gi|11761336|dbj|BAB19203.1| MurC [Shewanella violacea]
 gi|293329272|dbj|BAJ04003.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
          Length = 494

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 152/409 (37%), Gaps = 39/409 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +   L IPV    ++L  L +             +A+ G+ GKTTT  ++
Sbjct: 100 AIDAENPELVAAKELRIPVVQRAEMLAELMRYR---------HGVAVAGTHGKTTTTSLI 150

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +   +           +    T AR+  +  + I E   S    +      ++P +
Sbjct: 151 ASIYAQADRDP--TFVIGGLLNSAGTNARL-GNSRYLIAEADESDASFLH-----LQPMV 202

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +V+T I   H+  +    E++ S   +    L   G   +  DD     L  K      +
Sbjct: 203 SVVTNIEADHMDTYGGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVRELLPKV----GR 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD Q   + Q    S   ++  G + + V+ +  G H   N L ++ + +
Sbjct: 259 KIVTYGFSEDADIQALNFVQQGYSSHFTLRRDGVEDIAVMVNLPGEHNVLNALASIAVAT 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + +  + AL+ F     R ++           ++ + Y  +P+ + A I       
Sbjct: 319 EDEIEDEAIVLALAQFEGIGRRFQQLGTFATSKGEVMLVDDYGHHPSEVAATIKAARLGW 378

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALK 415
           P  + R + +          ++  + D  EVLS          Y+     + G    AL 
Sbjct: 379 P--DKRLVMIY--QPHRYSRTRDLYDDFVEVLSQVDCLILLDVYSAGEAPVPGADSRALC 434

Query: 416 DALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLI 461
            ++ +   +   +    + L   +   L DGD+++ + + + G   +LI
Sbjct: 435 RSIRQRGQLDPIFVAGTEQLLSLLPDVLQDGDLLLTQGAGNIGTLSKLI 483


>gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina
           NCIMB 400]
 gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina
           NCIMB 400]
          Length = 485

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 146/393 (37%), Gaps = 38/393 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +   L IP+    ++L  L +             +AI G+ GKTTT  ++        + 
Sbjct: 98  AAKELRIPIVRRAEMLAELMRYR---------HGVAIAGTHGKTTTTSLIASVYGQADRD 148

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                     +    T AR+     + I E   S    +      ++P ++VIT I   H
Sbjct: 149 P--TFVIGGLLNSAGTNARLGTS-RYLIAEADESDASFLH-----LQPMVSVITNIEADH 200

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E++ +   +    L   G   +  DD     +  +      + + ++G S+ 
Sbjct: 201 MDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCIDDEVIREIMPRI----GRQVVTYGFSEE 256

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD Q   + Q   QS   V+  GK  +++V +  G H   N L  + + S    D    +
Sbjct: 257 ADVQAINFAQNGHQSSFTVKRHGKDNVDIVLNLPGEHNVLNALAAIAVASEDDIDDSAIV 316

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +AL+ F     R +            ++ + Y  +P+ + A I       P     +  V
Sbjct: 317 QALAEFEGIGRRFQHLGEFETPNGSVMLVDDYGHHPSEVLATIKAARAGWPD----KRLV 372

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH---- 425
           +         ++  + D  +VLS  +   +  V+ +G   +   D  AL RSI +     
Sbjct: 373 MAYQPHRYSRTRDLYEDFVDVLSQVDCLLLLDVYAAGEAPIPGADGRALCRSIRLRGQID 432

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +  + D L   +   L  GD+ + + + + G
Sbjct: 433 PIFIASPDQLAAVLPDVLQHGDLFMTQGAGNIG 465


>gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 454

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 144/402 (35%), Gaps = 44/402 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V ++   V +     IP+    ++L  L +L            IAI G+ GKTTT  + 
Sbjct: 73  AVSMDNPEVQAAQEKGIPIIPRAEMLAELMRLRKG---------IAIAGTHGKTTTTSLT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        I      +    + AR+      G F L  +   +  FL   + P +
Sbjct: 124 AAIFDEAGTDPTVI--IGGRLNAYGSNARLGE----GEFLLAEADESDGSFLC--LSPVV 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   H+  +   + I +A       +   G   +  DD+    L  +      + 
Sbjct: 176 NVVTNVDLDHVDFYHDQQAIDTAFINFMNKVPFYGMNVVCGDDAGVRRLLPQIK----RP 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G   +   +      C E S   V L G+ + EV     G H   N L  +G+   
Sbjct: 232 VLTYGFGPDNQLRAETVT-CGETSRFRVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLE 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS---- 361
                D  ++ L+ F    G G+R+     +G   ++D+ Y  +PA + A ++       
Sbjct: 291 TGIAADVCLRGLANF---RGVGRRFERKGERGGVLVVDD-YGHHPAEIAATLATARTCYP 346

Query: 362 ------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+ GD C+  +           +  +Y  S   + G    +L 
Sbjct: 347 GRRLVVAFQPHRFSRTKALFGDFCKAFDNVDKL-----LLTEIYPASEAPIPGVSGQSLA 401

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + +  +  V Y +  D +   +  +L  GD+ +   + S 
Sbjct: 402 QGIRQVSNTDVDYFQDFDAMRAALPETLRPGDLFLTLGAGSI 443


>gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
 gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
          Length = 487

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 164/479 (34%), Gaps = 51/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL               V+   IDSR +     F A+ G   DG  ++  A  K
Sbjct: 1   MMLLKDLL----APWFHYAGTESVHAPVIDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAK 56

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA   +V+TD     G       L I  F ++  + A+ +    A  R K  ++ +TG+ 
Sbjct: 57  GAAAALVHTDDPDEHGKVSYEPGLCIAFFQLNRQVSAVARQY-YALTRGKLRVVGVTGTN 115

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFG-- 163
           GKT+  +++      +    A +G+  N +   L             +A +      G  
Sbjct: 116 GKTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAK 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +  + +S  G ++     V   +AV T ++  HL     ++  A+AK  +F     +   
Sbjct: 176 VCAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFAFGSLSAR- 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD   E        +G  T +S      AD++              +   G    +
Sbjct: 235 VINLDDKVGEQW---FDGMGCATGFSCLGHAKADWRFENAHFHHAGFSANLVWPGGQKPL 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  L  ++ L   V   + A +      G   R  C   +   +L+ 
Sbjct: 292 ECRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPG---RMECFPRKDGVSLVV 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P +++ A+        H EG    V G   +  +  +    + AE  +      
Sbjct: 349 D-YAHTPDAIEQALKAARH---HCEGALWIVFGCGGDRDKGKRPLMAEAAEAFA----DC 400

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + L+  +  +         +K  L                    S    GD++++  K 
Sbjct: 401 LVLTSDNARSEDPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKG 459


>gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
 gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
          Length = 512

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 154/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 282 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 340

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 341 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 393

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 450 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
 gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
          Length = 512

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 154/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 282 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 340

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 341 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 393

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 450 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|108759161|ref|YP_633742.1| UDP-N-acetylmuramate--L-alanine ligase [Myxococcus xanthus DK 1622]
 gi|123374163|sp|Q1D0T1|MURC_MYXXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108463041|gb|ABF88226.1| UDP-N-acetylmuramate--alanine ligase [Myxococcus xanthus DK 1622]
          Length = 472

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/434 (21%), Positives = 165/434 (38%), Gaps = 48/434 (11%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           R +     FF  +G      + I   V   +  V  +   V +     IPV    ++L  
Sbjct: 55  RLVRMGATFF--EGHR--AQNLIQADVVVISSAVRKDNPEVVAARQRKIPVIPRAEMLAE 110

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLT 152
           L +L  A         +A+ GS GKTTT  M+   LS+     T    G  N        
Sbjct: 111 LMRLKYA---------VAVAGSHGKTTTTSMVATVLSAAGLDPTAVVGGKVNV------- 154

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  EL +    E       + P IA++T I P H+ ++  ++ + SA  E
Sbjct: 155 ---LDSNAKLGKSELMVVEADESDGSFLHLHPSIAIVTNIDPEHMDHYGDLDTLQSAFVE 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G   L  D+   + L  +      K   ++G S  AD++L   +     +  
Sbjct: 212 FCNRVPFYGLNVLCLDNPNVQALLPRIE----KRFVTYGSSHMADYRLENIQLDGFTTRF 267

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
               + +S+ E     +G H A N L  + +   +   ++T  ++L+ F    G  +R+ 
Sbjct: 268 NAYRREESLGEFRVRMVGAHNAFNALAVIAVAEEMDIPLETVRESLAEFG---GVQRRFT 324

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGEL 384
                   T++D+ Y  +P  + A ++   +      GRR+ V             M E 
Sbjct: 325 VRGEAQGITVVDD-YGHHPTEVLATLAGARRA----FGRRVVVAFQPHRYTRTHDLMKEF 379

Query: 385 SQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441
           + SF+  D+  V S+Y      + G    AL DA+    H  V + E    L   +   L
Sbjct: 380 TTSFNDSDVLFVTSVYAAGEERIHGATGDALADAVRAHGHRDVTFVEKRTDLPAALLPRL 439

Query: 442 VDGDVVVVKSSNSC 455
            +GD+V+   +   
Sbjct: 440 REGDLVLTLGAGDI 453


>gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
 gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
          Length = 509

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 40  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 99

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 100 GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 159

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 160 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 219

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 220 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 278

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 279 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 337

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 338 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 390

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 391 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 446

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 447 TYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 481


>gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
 gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
          Length = 499

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 156/457 (34%), Gaps = 46/457 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +    
Sbjct: 30  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRA 89

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 90  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 149

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 150 TTGNGFLNALEPAANTTGNALQIQATLRDLAEHGAQYTALETSSHGLVQGRVKKLHFVAG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
           V + ++  HL     +E  A+AK  +F          +N DD+      K    A+G+  
Sbjct: 210 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 247 IYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +    K   A     R+         +  +      E+    IG   A N+L+ L  +  
Sbjct: 269 V---AKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 325

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +    +       P  GR + ++          I   Y   P +++ A+  L     
Sbjct: 326 LGFEKSALLATAPKLRPVLGRMELFQREQKAK----IVVDYAHTPDALEKALRALR---V 378

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
           H  G+  A++G   +     +     +AE  +      V L+  +  +         +  
Sbjct: 379 HCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVA 434

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L      H          +        D++++  K 
Sbjct: 435 GLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
 gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
          Length = 495

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 157/455 (34%), Gaps = 44/455 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           ++ + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G       
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I +TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 143 YNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N     L                 R   +       L  S  G ++     +     V
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI 247
            + ++  HL     ++  A AK  +F          +N DD+      K   HA+G+  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSE-HACQRAIINVDDAVGAQWGKQLPHAIGVSLL 265

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +       R+ +       ++        E+    IG   A N+L+ L  +  L 
Sbjct: 266 AQ--PNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPQLRPVLGRMELFQREHKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---AL 418
            G+  A+ G   +     +     +AE  +      V L+  +  +      + D    L
Sbjct: 377 AGQLWAIFGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMLVGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +   +    D++++  K 
Sbjct: 433 THPERAHIEHNRFQAASYALQNAGAQDIILLAGKG 467


>gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440]
 gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440]
 gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1]
          Length = 482

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +  A   V+V +  +              IPV    ++L  L +          
Sbjct: 65  FVGHRAENAATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------- 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  +L    ++              IG  LT A     +    + +
Sbjct: 117 -HGVAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGTSRYLI 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P +AV+T I   H++ +     ++     E    L   G   + 
Sbjct: 170 AEADESDASFL--HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD     +  +      +   ++G S+ AD +    +Q   Q+   V  + +  +EV  
Sbjct: 228 LDDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDREPLEVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I +      +  ++ LS F     R + Y     +G   ++ + 
Sbjct: 284 NMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGELPVEGGSVMLVDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I     +      RR+ ++         ++  + D  +VL   N+    
Sbjct: 344 YGHHPTEVAAVIKA---VRGGWPSRRLVIVYQ-PHRYSRTRDLYDDFVQVLGDANVLLLM 399

Query: 403 HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + +  
Sbjct: 400 EVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILLCQGAGD 459

Query: 455 CG 456
            G
Sbjct: 460 VG 461


>gi|328472000|gb|EGF42877.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           10329]
          Length = 485

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 154/432 (35%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D   L R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDVG--KVAKQL 473


>gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans
           OS217]
 gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans
           OS217]
          Length = 479

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 163/432 (37%), Gaps = 45/432 (10%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           I G H D  +     V      +      + +     IP+    ++L  L +        
Sbjct: 69  IIGHHADSVEHADVVVVS--TAINHENPEIIAAKERRIPIVRRAEMLAELMRYR------ 120

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                +AI G+ GKTTT  ++    +      T+   G  N+      T AR+     + 
Sbjct: 121 ---HGVAIAGTHGKTTTTSLIASVYAQAQRDPTFVIGGLLNS----AGTNARLGTS-RYL 172

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           I E   S    +      ++P ++VIT I   H+  +    E++ +   +    L   G 
Sbjct: 173 IAEADESDASFLH-----LQPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGV 227

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281
             +  DD     +  +      + I ++G S++AD Q   + Q   QS   V+ + K  +
Sbjct: 228 AVMCIDDEINREIMPRV----GRQIVTYGFSQDADVQALNFNQIGHQSQFVVRRKDKEDL 283

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +V +  G H   N L  + + S    D ++ +KAL+ F     R +            +
Sbjct: 284 ALVLNLPGEHNVLNALAAIAVASEDDIDDESIVKALAEFEGIGRRFQHLGEFNTANGQVM 343

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           + + Y  +P+ + A I       P     +  V+         ++  + D  EVLS  + 
Sbjct: 344 LVDDYGHHPSEVLATIKAARAGWPD----KRLVMAYQPHRYSRTRDLYDDFVEVLSQVDC 399

Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
             +  V+ +G   +   D  AL RSI +       +  + D L   +   L  GD+++ +
Sbjct: 400 LLLLDVYSAGEAAIPGADGRALCRSIRLRGQIDPIFVASPDQLASVLPDVLQAGDLLLTQ 459

Query: 451 SSNSCG-FYRLI 461
            + + G   +L+
Sbjct: 460 GAGNIGALSKLL 471


>gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 482

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 153/428 (35%), Gaps = 46/428 (10%)

Query: 59  HAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           HA +   GA +VVV++ +      V +     IPV     +L  + +             
Sbjct: 76  HAAENIDGASVVVVSSAIRADNVEVVAAQERRIPVIQRAQMLAEIMRFR---------HG 126

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+++  +            N  +              + I E   S
Sbjct: 127 IAVAGTHGKTTTTAMISMIYAEAGLD---PTFVNGGLVKSAGTNAHLGCSRYLIAEADES 183

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +      ++P ++V+T I P H+       EE+          L   G   L  DD
Sbjct: 184 DASFLH-----LQPMVSVVTNIEPDHMETYHGSFEEMKHTYVNFLHNLPFYGLAVLCADD 238

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI 288
                L  K      + + ++G S+ AD+++  ++Q   Q    V    G+ ++V+ +  
Sbjct: 239 DVLTELTPKV----GRQVITYGFSEKADYRIEDYQQTGFQGHYTVITPSGERIDVLLNVP 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    L +        +  + AL+ F     R  +    +      ++ + Y  
Sbjct: 295 GRHNALNATAALVVAKEEGIGNEAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDDYGH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYN 400
           +P  +   I    Q     E +RIA++            F         +D+  +L +Y 
Sbjct: 355 HPTEVGVTIQAARQ---GWENKRIAMIFQPHRYSRTRDLFDDFVQVLSQVDVLIMLDVYA 411

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                ++G    +L  ++     V   +      L   +   L DGD+++ + + +    
Sbjct: 412 AGETPIAGADSRSLCRSIRNLGKVDPIFVSDHRQLGEILDQVLQDGDLILAQGAGNV--S 469

Query: 459 RLINLLLE 466
           ++   L E
Sbjct: 470 KIARQLAE 477


>gi|156973222|ref|YP_001444129.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166224748|sp|A7MXR2|MURC_VIBHB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156524816|gb|ABU69902.1| hypothetical protein VIBHAR_00903 [Vibrio harveyi ATCC BAA-1116]
          Length = 485

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 154/432 (35%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S++AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFSEDADVRIEDYHQEGQQGKFTVVREGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +      +  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I          + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTIHAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D  AL R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDVG--KVAKQL 473


>gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
 gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
          Length = 512

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 282 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 340

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 341 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 393

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 450 TYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
 gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
          Length = 493

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 171/481 (35%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +            ++ +  DSR +     F  I G   DGH F+   + KG
Sbjct: 1   MKLTKLLERLTYQCKEGTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSFVNEVIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           + ++V   ++    G   + +  V +   AL  L+ A       K   I ITG+ GKTTT
Sbjct: 61  STVIVAEKEVSVPDG---VTLLLVSNTREALAYLSAAYFDYPAEKLKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             M+   LS        IG+    IG               V    A+M  D    +  +
Sbjct: 118 TYMVHSILSEAGIKTGLIGTIETMIGDTVIPANNTTPESYLVQQYFAKMVEDGCTCVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +          I V T + P H+        EE  + K  +F+  +       
Sbjct: 177 EVSSQGLMLHRVSGFTFDIGVFTNMEPDHIGPGEHGSFEEYMACKGLLFKQCK---VGIA 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SME 282
           N DD   E + +        T+ ++G S+ AD +       S+   + V  + K      
Sbjct: 234 NVDDKHMEQVLSGHTC----TLETYGLSEKADLRAVDIDLHSKLGNLMVLYKVKGLCDFP 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G     N L  + I        +       V    + +G+     +++ F  +I
Sbjct: 290 VQVNIPGKFTVYNSLTAIAICRHFNISTERIK---EVLTKVKVKGRVEPVEVSKKFTMMI 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y  N  S+++ +S L +  P    R + + G     G  S+    ++ E+ S     
Sbjct: 347 D--YAHNAMSLQSVLSTLREYEPK---RLVCLFGC---GGNRSKDRRFEMGEISSNLADY 398

Query: 403 HVWLSG-FHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            +  S        +D L          +  ++   +  + +   I ++  +GD++++  K
Sbjct: 399 TIVTSDNPRFEEPQDILNDIVVGVKRGKGDYIAILDRKEAIRHSILTA-KEGDIILIAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|332305226|ref|YP_004433077.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172555|gb|AEE21809.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 484

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 153/423 (36%), Gaps = 50/423 (11%)

Query: 65  AGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV          V +     IPV    ++L  L +             IAI G+ G
Sbjct: 77  ANVVVVSSAIDPTNPEVNAANEKRIPVIRRAEMLAELMRFR---------HGIAIAGTHG 127

Query: 119 KTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTTT  ++    +   +  T+   G  N+      T AR+     + I E   S    + 
Sbjct: 128 KTTTTSLIATIFAQAELDPTFVIGGLLNS----AGTNARLGSS-QYLIAEADESDASFVH 182

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+       +++     +    L   G   L  DD     L
Sbjct: 183 -----LQPMVSVVTNIEPDHMETYQGDFDKMQDTYIDFLHNLPFYGLAVLCIDDPVITEL 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQ 294
             +      +   ++G S+NAD +    K    QS   +  +    ++V  +  G H   
Sbjct: 238 LPRIK----RKYLTYGYSENADVRATNVKHRFNQSEFTLIRKDHDDIQVTVNAPGKHNVL 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + + +           AL+ F     R +            L+ + Y  +P  ++
Sbjct: 294 NSLAAIAVATDENIADSAIKTALANFSGIGRRFEMLGEFATGDGDVLLVDDYGHHPTEVE 353

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHV 411
           A I+V      +   RR  V+         ++  + D   VLS  ++     V+ +G   
Sbjct: 354 ATIAVARN---NWPDRR-LVMAYQPHRYSRTRDLYEDFVRVLSQVDVLLLLDVYSAGEEK 409

Query: 412 LALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   D  +L RSI         Y      L   +  +L D D+++ + + + G  ++   
Sbjct: 410 IEGADSKSLCRSIRQRGQLEPIYVADKSELPKLLADNLSDQDILMTQGAGNIG--QIAKQ 467

Query: 464 LLE 466
           L +
Sbjct: 468 LQD 470


>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii L2-6]
          Length = 492

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 168/479 (35%), Gaps = 51/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +    +  +  I  DSR  AP   F  I G   D HD+    V  G
Sbjct: 1   MKLEQLLEGVSYTLVQGSLELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVADG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
              +VV  D+  S       V  V+    AL  ++         + T+I +TG+ GKTTT
Sbjct: 61  VTALVVQHDIDLSTVP-GAAVLKVESSRYALALMSGNLFGNPSRRMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L +  +    IG+   +                      R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      +   I V T ++P H+        EE  S K ++F+      T  +N
Sbjct: 180 VSSQGLMMDRVAGIHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFKRCT---TGVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGK-SMEV 283
            DD   E L           + ++G S+ AD++   ++      +  +   + GK  M+V
Sbjct: 237 IDDENTEALLEGHTC----KLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSGKDDMDV 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  L +  +L    +   +          +G+     +++ F  L+D
Sbjct: 293 KVNMPGEFSVYNALAALTVGKVLGLPDEAIHEG---LGRCVVKGRVELVPISRKFTILLD 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNIS 402
             Y  N  S ++ ++ L    PH   R + V G     G  S+     + E+ +   + S
Sbjct: 350 --YAHNEVSTESLLTTLRAYEPH---RLVVVFGC---GGNRSKLRRYGMGEICARMADFS 401

Query: 403 HVWLSGFHVLALKDAL--------PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKS 451
            +         ++D L          +    + E  D      +      +GD++ V  
Sbjct: 402 ILTEDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIG 460


>gi|153839043|ref|ZP_01991710.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|260363428|ref|ZP_05776276.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
 gi|31076799|sp|Q87SG3|MURC_VIBPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149747471|gb|EDM58419.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|308114671|gb|EFO52211.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
          Length = 485

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I          + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTIKAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D   L R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDVG--KVAKQL 473


>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 492

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 169/479 (35%), Gaps = 51/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +            ++ I  DSR  AP   F  I G   D H+F      KG
Sbjct: 1   MKLEQLLEGVPFTLAQGSLDTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
              +V+  D+  S     + V  V+    A+  ++         K T+I +TG+ GKTTT
Sbjct: 61  VSALVIQHDIDLSALP-GVTVVKVESSRYAMALMSANLFGNPSRKMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L +  +    IG+   +                      R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKETANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      V  ++ V T ++P H+        EE  S K ++F   ++     +N
Sbjct: 180 VSSQGLMMDRVAGVHYNVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF---KRCDVGVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGK-SMEV 283
            DD   E L           + ++G+++ AD++   ++      +  ++  + GK  M+V
Sbjct: 237 IDDENTEALLEGHTC----KLITYGRAEQADYRETGFELLRTHDFLGVKFHVTGKDEMDV 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  L +  +L                   +G+     +++ F  L+D
Sbjct: 293 KVNMPGEFSVYNALAALAVGKVLGLPDQAIHDG---LGKCVVKGRVELVPISKKFTILLD 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNIS 402
             Y  N  S ++ ++ L    PH   R + V G     G  S+     + E+ +   + S
Sbjct: 350 --YAHNEVSTESLLTTLRAYKPH---RLVVVFGC---GGNRSKLRRYGMGEICAKMADFS 401

Query: 403 HVWLSGFHVLALKDAL--------PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKS 451
            +         ++D L          +    + E  D      +      +GD++ V  
Sbjct: 402 ILTEDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIG 460


>gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 172/481 (35%), Gaps = 56/481 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +L     G      P+    V GI+ DSR++ P + + A+ G    G DF+  A   G
Sbjct: 17  LAELA----GQLGVAAPETEAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLG 72

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A  V+ +        +  +PV   ++    + +LA     R   +   I ITG+ GKTTT
Sbjct: 73  AAAVLTDPSGAERAAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIR 176
             ++   L +  K+   IG+    IG     +    P   D       M   G     + 
Sbjct: 133 AYLVEGGLRTA-KSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 177 FLTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             +H +           IAV T ++P H+   SG+E+   AKA++F    ++    +N D
Sbjct: 192 VSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTP-ARSRLGVVNTD 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVH 285
           D +   L A++       + ++      +AD++    +     S   V    G  +    
Sbjct: 251 DEYGRRLAAQATV----PVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVRVTARS 306

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  +  ++    D   A   ++      GR +R     + G        
Sbjct: 307 PLAGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERV----DAGQPYFAVVD 362

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y     ++++ +  L +++   +GR   VLG     G+   +  + +    +    + V 
Sbjct: 363 YAHKTDAVESVLKALRKVT---KGRLHIVLGC---GGDRDTTKRMPMGAAAARLADTAVL 416

Query: 406 LSG----FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            S        LA+         ++P      V   E          +    GD V+V  K
Sbjct: 417 TSDNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGK 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
 gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
          Length = 499

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +    
Sbjct: 30  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRA 89

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 90  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 149

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 150 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 210 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 269 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 327

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 328 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 380

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 381 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 436

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 437 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum SS9]
 gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Photobacterium profundum SS9]
          Length = 506

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 160/464 (34%), Gaps = 50/464 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
           +  V  ++IDSR I   + F A+ G   DG  FI  A+  GA  V+   D +A  G +  
Sbjct: 29  EHSVVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNIAKHGDIVE 88

Query: 83  ---IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              I +     +   L+ +     A+  ++  ++A+TG+ GKTT  ++L    + I    
Sbjct: 89  QDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQWANLIGYNA 148

Query: 138 ACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHL 181
             +G+  N +   LT A                 +    DF   E+    L + R     
Sbjct: 149 GVMGTTGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLVQGR--VKA 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSH 240
           ++   ++ T ++  HL     +   A AK  +F    + G   +N DD   F  L    H
Sbjct: 207 LQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE-HQAGIPVINADDDIGFTWLADLPH 265

Query: 241 ALGIKT-IYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           A+ + T     G+        L      ++   +       + +     +G     N+L+
Sbjct: 266 AVAVVTDKARLGEHYQGQALWLTDVMYSTQGVNISFDSSWGAGQFTAPLVGSFNVSNLLL 325

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L   +D  I          GR + ++         ++   Y   P +++ A+ 
Sbjct: 326 ALATLLALGHSIDKLIATAPHLTAVIGRMEVFQSP----DKPMVVVDYAHTPDALEKALQ 381

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--- 415
            L     H +G+   + G   +     +    +++E L+      + ++  +        
Sbjct: 382 ALR---VHCQGKLWCIFGCGGDRDTGKRPMMAEISERLA----DRIIITDDNPRTEAPAA 434

Query: 416 ------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   L                 +        D++++  K 
Sbjct: 435 IVSDMLQGLALPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKG 478


>gi|44888240|sp|Q9F1M9|MURC_SHEVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 150/399 (37%), Gaps = 39/399 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +   L IPV    ++L  L +             +A+ G+ GKTTT  ++    +   + 
Sbjct: 99  AAKELRIPVVQRAEMLAELMRYR---------HGVAVAGTHGKTTTTSLIASIYAQADRD 149

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                     +    T AR+  +  + I E   S    +      ++P ++V+T I   H
Sbjct: 150 P--TFVIGGLLNSAGTNARL-GNSRYLIAEADESDASFLH-----LQPMVSVVTNIEADH 201

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E++ S   +    L   G   +  DD     L  K      + I ++G S++
Sbjct: 202 MDTYGGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVRELLPKV----GRKIVTYGFSED 257

Query: 256 ADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD Q   + Q    S   ++  G + + V+ +  G H   N L ++ + +    + +  +
Sbjct: 258 ADIQALNFVQQGYSSHFTLRRDGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIV 317

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL+ F     R ++           ++ + Y  +P+ + A I       P  + R + +
Sbjct: 318 LALAQFEGIGRRFQQLGTFATSKGEVMLVDDYGHHPSEVAATIKAARLGWP--DKRLVMI 375

Query: 375 LGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH 425
                     ++  + D  EVLS          Y+     + G    AL  ++ +   + 
Sbjct: 376 Y--QPHRYSRTRDLYDDFVEVLSQVDCLILLDVYSAGEAPVPGADSRALCRSIRQRGQLD 433

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLI 461
             +    + L   +   L DGD+++ + + + G   +LI
Sbjct: 434 PIFVAGTEQLLSLLPDVLQDGDLLLTQGAGNIGTLSKLI 472


>gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 498

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 160/484 (33%), Gaps = 52/484 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LLQ      +       V G+++DSR I P   F A++G  + G  ++  A+  
Sbjct: 1   MMRLRTLLQPW--LDLTDADDRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALAA 58

Query: 64  G--------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAI 113
           G        AG V    D   +     +P+  V D+   L  +A        ++  ++ +
Sbjct: 59  GAGAVLWEPAGDVAPEPDERTAAERAGVPLIAVPDLGRRLGPIAARLYGDPSARMRVVGV 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPV 158
           TG+ GKT+  + L   L         +G+  +                  V  TLAR+  
Sbjct: 119 TGTDGKTSVTQYLAQLLDREAHRCGLVGTLGSGFPDSLQPGTHTTPDAASVQRTLARLHR 178

Query: 159 DVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                +  E+    L + R     VR H AV+T +   HL     +   A AK+ +F G+
Sbjct: 179 QGAAQVAMEVSSHALDQHR--VAGVRFHTAVLTNLGRDHLDYHGDLAGYAEAKSRLF-GV 235

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD+F   +            YS      A  +        +   + +  +
Sbjct: 236 PGLQWAVLNLDDAFGRQVHGALAGGTRALGYSLAGHPQAGVRGEGLVLEPQGLRLRLSTE 295

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                V    +G   A N+L        L   +   ++ L+   P  GR + +     + 
Sbjct: 296 WGEAPVQAPLLGAFNAANVLAVAAAALSLGVALPVIVERLAGLRPVPGRMEPF----TRP 351

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +   Y   PA+++ A   L+ +  H  G    V G   +     +    + A  L+
Sbjct: 352 GRPSVIVDYAHTPAALRGA---LAAVRAHYRGAVWLVFGCGGDRDRGKRPLMGEAAAELA 408

Query: 398 LYNISHVWLSG-----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449
                 V L+           + D + +              G            DVV+V
Sbjct: 409 ----DRVVLTDDNPRREDPDRIIDDIRQGAPGRDWPVLRDRAGAIRHAVERAGPEDVVLV 464

Query: 450 --KS 451
             K 
Sbjct: 465 AGKG 468


>gi|28897235|ref|NP_796840.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28805444|dbj|BAC58724.1| UDP-N-acetylmuramate-alanine ligase [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 490

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 76  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 127

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 128 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 182 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 237 VCIDDPVIRELIPRIS----RQVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDI 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 293 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 352

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I          + R + +          ++  + D A VL   ++  
Sbjct: 353 DDYGHHPTEVDVTIKAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 408

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D   L R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 409 MLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 468

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 469 GDVG--KVAKQL 478


>gi|254509131|ref|ZP_05121231.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
 gi|219547928|gb|EED24953.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
          Length = 486

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 143/405 (35%), Gaps = 40/405 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  +  IP+    ++L  L +             IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVIAARAARIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +                I E   S    +      ++P ++++T I
Sbjct: 147 AGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELVPRIS----RQVITYG 254

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q  +Q    V  +GK  +E+  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIDNYRQEGQQGKFTVIREGKADLEITLNIPGRHNALNASAAIAVATEDDISD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  + A++       R              ++ + Y  +P  ++  I      +   + R
Sbjct: 315 EAILNAMAGTQGTGRRFDHLGEFETGNGNAMLVDDYGHHPTEVEVTIQAAR--NGWEDKR 372

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH 425
            + +          ++  + D A VL   ++     V+ +G   +A  D  AL R+I   
Sbjct: 373 LVMIF--QPHRYSRTRDLYDDFANVLEQVDVLIMLDVYSAGEKPIAGADGRALCRTIRGR 430

Query: 426 ------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 431 GKLDPIFVPDSQSLPSVLANVLQDGDLVLTQGAGDVG--KVAKQL 473


>gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 464

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 154/417 (36%), Gaps = 50/417 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  I    I       + G+ ++++S  P + F A++G   +G D+I  A+ KG
Sbjct: 1   MNISQLLINI----IQTEVDIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTK 123
              ++V++  +      +IP   V+++   L  L        +K  +I +TG+ GKT+  
Sbjct: 57  CVAILVDSKEI----ECAIPSIRVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVT 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGM 169
            +++  L  +      IG+        L     P               D+ + + E+  
Sbjct: 113 YLISQLLEKLGVKNGLIGTLGITHNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIEISS 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R     ++   AV T +   HL     ++E  + K  +F  L    ++ LN DD
Sbjct: 173 HALAQNRIAGLNIKQ--AVFTNLTQDHLDYHHTLDEYKTTKQRLFT-LNCVKSVILNQDD 229

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             ++     S     K   S+  +   DF   K  Q        VQL     E     +G
Sbjct: 230 HHYKHFLKVSKG---KKQTSYSLN---DFNSIKIIQQG----FLVQLDHYVFE--IPFLG 277

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L TL  V  L    +  I  +       GR ++        +   ID  Y   
Sbjct: 278 EFNLLNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQI-----NHYHAWID--YAHT 330

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           P +++ AI+ L +  P+ + R +   G     G   ++    +  + S    S +  
Sbjct: 331 PNALENAITTLQKHYPNFKIRIVFGCG-----GNRDRNKRSKMGRIASKLADSIILT 382


>gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
 gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
          Length = 495

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 26  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 85

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 86  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 145

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 146 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 206 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 265 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 377 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 433 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
 gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
          Length = 534

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/473 (19%), Positives = 162/473 (34%), Gaps = 43/473 (9%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
            A        V    V G++ DSR++ P + + A++G    G  F   A + GA  V+ +
Sbjct: 41  AATDLEQASSVDSVVVTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTD 100

Query: 72  TDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                   +  +PV  V D    L      +      +  +I  TG+ GKTT   ++   
Sbjct: 101 PAGYDRAAATRLPVITVPDPRSRLGDVAAWIYGHPARELLLIGTTGTSGKTTVSYLVESG 160

Query: 130 LSSIKKTYACIGSY-----NNHIGVPLTL-----------ARMPVDVDFGIFELGMSHLG 173
           L         +G+      +  I   LT                 DV     E+    L 
Sbjct: 161 LREAGMRTGLVGTVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALA 220

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             R     VR  +AV T ++  HL   + + +    KA +F   E      +N DDSF  
Sbjct: 221 LGR--VAGVRYDVAVFTNLSQDHLDFHADLHDYFETKARLFTP-EFAKVAVVNRDDSFGR 277

Query: 234 LLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGY 290
            L  +    G   + +F  + +  AD+        +  S   V   G  +M+      G 
Sbjct: 278 TLIDRITEQGAIPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGP 337

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N +  +  +      + TA+  ++      GR +R      Q F  ++D  Y+  P
Sbjct: 338 FNVANAMAAIVALIEAGVPLPTAVAGVAAARGVPGRMER--VDEGQDFTAIVD--YSHKP 393

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--------- 401
            +++A ++ L    P  EGR   V+G   +     +    + A  L+   I         
Sbjct: 394 GAIEAVLTSLR---PITEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSE 450

Query: 402 SHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V +    +  +    + +   +              +    GDVVVV  K 
Sbjct: 451 DPVTIITSMLEGVAKVPVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKG 503


>gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Vibrio cholerae LMA3894-4]
          Length = 495

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G +    
Sbjct: 26  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRA 85

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 86  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 145

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 146 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 206 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 265 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 377 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 433 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|119773496|ref|YP_926236.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
 gi|166224726|sp|A1S2G0|MURC_SHEAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119765996|gb|ABL98566.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
          Length = 484

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 154/421 (36%), Gaps = 48/421 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +A+     IP+    ++L  L +             +A+ G+ GKTTT  ++
Sbjct: 88  AIKHDNPEIAAAKEKRIPIVRRAEMLAELMRYR---------HGVAVAGTHGKTTTTSLI 138

Query: 127 TIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                      T+   G  N+      T AR+     + I E   S    +      ++P
Sbjct: 139 ASIYGQAERDPTFVIGGLLNS----AGTNARLGSS-RYLIAEADESDASFLH-----LQP 188

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            + V+T I   H+  +    E++ S   +    L   G   +  DD     L  +     
Sbjct: 189 MVTVVTNIEADHMDTYGGDFEKLKSTFVDFMHNLPFYGVAVVCVDDPVVRELIPRI---- 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGI 302
            + + ++G S +AD Q   + Q        V+ +GK  + +  +  G H   N L  + +
Sbjct: 245 GRQVVTYGFSDDADVQALNFVQEGHSCRFTVRRKGKDDLSLKVNLPGQHNVLNSLAAIAV 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +    + +  +KAL+ F     R +            ++ + Y  +P+ + A I     
Sbjct: 305 ATEDDIEDEAIVKALAEFQGIGRRFQHLGKFATPNGEVMLVDDYGHHPSEVLATIKAARA 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--A 417
             P     +  V+         ++  + D  EVLS  +   +  V+ +G   +   D  A
Sbjct: 365 GWPD----KRLVMAYQPHRYTRTRDLYEDFVEVLSQVDKLVLLEVYAAGETPIPGADGRA 420

Query: 418 LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           L RSI         +  + + L   +   L DGD+++ + + + G       L  E  A 
Sbjct: 421 LCRSIRQRGQLEPIFVASPEQLTSVLPDVLADGDLLLCQGAGNIG------ALSRELAAT 474

Query: 472 Q 472
           +
Sbjct: 475 E 475


>gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 538

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/486 (20%), Positives = 175/486 (36%), Gaps = 58/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G+  +  V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 17  LAELADQLGVDASGVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAA 76

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+ + D      +  +PV  VD+  G +  LA         ++  I ITG+ GKTTT  
Sbjct: 77  AVLTDPDGAERAAATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKTTTAY 136

Query: 125 ML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFG 163
           ++       A  +       IG+    IG     +                    DV   
Sbjct: 137 LVDGGLRAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERDVHSV 196

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L   R         +AV   ++P H+   SG+E+   AKA++F    ++   
Sbjct: 197 VMEVSSHALVLGR--VDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTK-ARSRAG 253

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWME-VQLQGKS 280
            +NYDD +   L  +S       + +F      +A ++    +     S    +   G++
Sbjct: 254 VINYDDEYGRRLIEESEV----PVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGET 309

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G     N L  L  +++   D  TA   +       GR +R       G   
Sbjct: 310 VRAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDV----GQPY 365

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L    Y     ++++ +  L +++   +G+  AVLG     G+  +     +   ++ Y 
Sbjct: 366 LAVVDYAHKTDAVESVLRALRKVT---DGKLHAVLGC---GGDRDRLKRGPMGSAVARYA 419

Query: 401 ISHVWLSG-----------FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            + V  S              +LA    +P      V   E  +       +    GD V
Sbjct: 420 DTAVLTSDNPRSEDPLAILAAMLAGAAEVPSHERGDVLVEEDRENAIAAAVARAEPGDTV 479

Query: 448 VV--KS 451
           +V  K 
Sbjct: 480 IVAGKG 485


>gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
 gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
          Length = 464

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/414 (21%), Positives = 155/414 (37%), Gaps = 45/414 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  + +      S +IP+    D+L  L           +   I + G+ GKTTT  M+
Sbjct: 72  AIPPDNEEYVYAKSKNIPILHRSDLLAEL---------TKEKKSIIVGGAHGKTTTTSMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            + L + K         +  I V   L  +  +   G  E  ++   E       + P+I
Sbjct: 123 ALVLENNK--------TDPTIIVGGELEDIGGNAKLGSGEYLVAEGDESDGSILKLNPYI 174

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T I   HL  +  IE I S   ++ E + + G + LN D      +  K      K 
Sbjct: 175 LVVTNIDNDHLDYYENIENIKSTFLKVIEKVPEDGYVLLNLDCKNIRDIIGKIK---DKK 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            Y++G S NADF        S  S  +V  +   +  V     G H   N L  +GI  I
Sbjct: 232 YYTYGFS-NADFTADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILNSLSAIGISYI 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +  IKAL  FH   G  +R +         L+ + Y  +P  + A +  L     
Sbjct: 291 LGLDFEQTIKALEKFH---GVQRRIQFKGVIENDVLVFDDYGHHPTEILATLETLR---- 343

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKD 416
               R + V          +     ++A+ LSL         Y+     + G     + D
Sbjct: 344 LYNRRLVVVF--QPHRYTRTYFLSKEIADALSLSDVVILMEIYSAGEKPIPGVSSRNIYD 401

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +    + ++    +      ++S L DGD+++   + +   +++   LL +
Sbjct: 402 EIKKKYPELEIYLVNDIVEAATKVKSVLRDGDLLLTLGAGNV--WKVGEALLAQ 453


>gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium sp. BNC1]
 gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chelativorans sp. BNC1]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 166/458 (36%), Gaps = 44/458 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
            I  +  ++G++ DSR +   + FFA++G   DG  +   A  +GA  ++       ++G
Sbjct: 15  SIAGETTISGLASDSRRVNAGDLFFALQGSKADGAAYAADAAGRGAVAIIAR---PGTVG 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + +PV   DD    L   +        AT++A+TG+ GKT+                A 
Sbjct: 72  DVGVPVIEADDPRHVLALASARLYGAQPATMVAVTGTSGKTSVAAFTRQIWEKAGLAAAS 131

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P++L ++  +     V     E     L + R     V+
Sbjct: 132 IGTTGVVAPGRDEYGELTTPDPVSLHKLLRELADAGVTHASMEASSHGLDQRRL--DGVK 189

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+     +E    +K  +F+ L   G    +  DD + E  +  + A 
Sbjct: 190 LAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLPKGAPAVIFADDPWSEPTEKVALAA 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G++ + + G+ +     +++ +    +   E++ +G   +++    G     N L+  G+
Sbjct: 250 GLQ-LLTVGR-RGTFLTIKRVEHERHRQRTEIEHEGMIYDIMLPLAGDFQVGNALVAAGL 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D A+   +     +G   R            I   Y   P +++   +VL  
Sbjct: 308 AISTGLPADKAV---AALEHLKGASGRLELTGTTEDGAQIYVDYAHKPDALE---NVLQA 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-------SHVWLSGFHVLALK 415
           + P   GR I V G   +     +    ++A  L+   I       S V        A+ 
Sbjct: 362 VRPFTTGRVIVVFGCGGDRDPGKRPIMGEIARRLADVVIVTDDNPRSEVPA--EIRRAIL 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +A+P +  +              + L  GD ++V  K 
Sbjct: 420 EAVPEATEIG---DRREAIRTAVAMLNSGDTLIVAGKG 454


>gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
 gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
          Length = 477

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 151/406 (37%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   +    +  IP+    ++L  L +             IA+ G+ GKTTT  ++
Sbjct: 87  AVKDDNPEILEAMAHRIPIVPRAEMLAELMRYR---------HGIAVAGTHGKTTTTSLI 137

Query: 127 TIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               +   +  T+   G  N+      T A++  +  F + E   S    +      ++P
Sbjct: 138 ASVFAEARLDPTFVIGGLLNS----AGTNAQL-GESRFLVAEADESDASFLH-----LQP 187

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T I   H++ +     ++     E    L   G   +  DD     L        
Sbjct: 188 MVSVVTNIEADHMATYDGDFNKLKKTFVEFLHNLPFYGMAVMCIDDDVVRELLPAV---- 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLG 301
            +   ++G S +ADF +    +   ++   V+  GK   +++  +  G H   N    + 
Sbjct: 244 GRATLTYGFSHDADFSIVDVNKLGLRTSFSVKRPGKHKQIDITINMPGDHNVLNATAAIA 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + +    D +   + +  F     R + Y     +    L+ + Y  +P  ++A IS   
Sbjct: 304 VATDEGIDDEAIQRGIEKFEGVGRRFQVYGEFDIEEGSVLLVDDYGHHPTEVEATISAAR 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDAL 418
           Q  P  + R + V          ++  + D   VLS  +   +  V+ +G   +   D  
Sbjct: 364 QAWP--DRRLVMVY--QPHRYTRTKDLYEDFVRVLSTVDSLLLLEVYSAGEEPIPGADGR 419

Query: 419 PRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             S  +         + E ++ +   ++S +  GDVV+ + + + G
Sbjct: 420 SLSRSIRSRGLIDPIFVEKIESIAEVLKSIVKPGDVVLTQGAGNVG 465


>gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 487

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 164/454 (36%), Gaps = 62/454 (13%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFG 87
           R  A   E FF     +            +GA +VV +T +      L       IPV  
Sbjct: 62  RLTAKGAEIFFGHSAENV-----------QGASVVVASTAISKENPELMAATELRIPVVR 110

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNN 145
             ++L  L +             IAI G+ GKTTT  + T   S      T+   G    
Sbjct: 111 RAEMLAELMRYR---------HGIAIAGTHGKTTTTALTTQIYSEAGLDPTFVNGG---- 157

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIE 204
            +    T AR+     + I E   S    +      ++P + V+T I   H+  +    E
Sbjct: 158 LVKSAGTNARLGCS-RYLIAEADESDASFLH-----LQPMVCVVTNIEADHMDTYGGDFE 211

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +     +    L   G   +  DD     L  +      + + ++G +++AD +L  + 
Sbjct: 212 VLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRV----GRPMLTYGFAEDADVRLVNYT 267

Query: 265 QCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           Q  +Q    VQ +GK  +++  +  G H A N    + + +    D D  ++AL  F   
Sbjct: 268 QTGQQGHFTVQRKGKPELDITLNIPGKHNALNATAAIAVATEEGVDDDAILRALVEFEGT 327

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R              ++ + Y  +P+ +   I      +   + R + +         
Sbjct: 328 GRRFDHLGEFDTGNGKVMLVDDYGHHPSEVDVTIKAAR--AGWEDKRLVMIF--QPHRYS 383

Query: 384 LSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDG 432
            ++  + D A VL   ++     V+ +G   +A  D  AL R+I         +    + 
Sbjct: 384 RTRDLYDDFANVLDQVDVLVMLDVYAAGEAPIAGADGRALCRTIRSRGKIDPIFVPEKEE 443

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L   + + + + D+V+ + +   G  ++   L E
Sbjct: 444 LPAVLANIIQNDDLVLTQGAGDVG--KIARQLAE 475


>gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
 gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
          Length = 486

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 152/410 (37%), Gaps = 43/410 (10%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +      +       IPV    ++L  L +             IA+ G+ G
Sbjct: 79  ADVVVVSTAIREENPEIRAARERRIPVVRRAEMLAELMRFR---------HGIAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  +                     IG  L  A     +  G + +  +   +  FL
Sbjct: 130 KTTTTSLTASLFGQGGLDP------TFVIGGKLNSAGTNAQLGLGRYLVAEADESDASFL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P I+V+T I P H+  +   I ++     +    L   G   L  DD   +++  
Sbjct: 184 --HLQPMISVVTNIEPDHMDTYGGDINKLYDTFVDFLHNLPFYGVAVLCLDDPGVQVILP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
           +      + I ++G   +AD +   + Q   ++   +    +  + +V +  G H  QN 
Sbjct: 242 RV----GRRIVTYGFHPDADVRAEDFVQVGTRTQFTLHRPNRDPLPLVLNLPGRHNVQNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +      + D    AL  F     R ++Y          L+ + Y  +P+ +   
Sbjct: 298 LAAIAVAMEEGVEDDAIEAALDQFQGIGRRFQQYGEFDTGAGKVLLVDDYGHHPSEVAVT 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA 413
           I       P  + R + V          ++  + D   VLS  +   +  V+ +G  ++ 
Sbjct: 358 IKAARASWP--DRRLVMVF--QPHRFSRTRDLYDDFCAVLSEVDCLLLMEVYSAGEDLIP 413

Query: 414 LKD--ALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             D  AL RSI        Y    +GL   +   L DGDVV+ + + + G
Sbjct: 414 GADSRALCRSIRQRGIDPVYVPGPEGLPALLADQLQDGDVVLTQGAGNIG 463


>gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 529

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 158/456 (34%), Gaps = 46/456 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +       +            +  + +DSRS+ P   +  + G    G +F   A   GA
Sbjct: 23  SLAGAADGLSVRLPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHGANFAAQAAALGA 82

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
             ++ + +         +P+   +    A+  +A            +I ITG+ GKTT  
Sbjct: 83  VALLTDAEGAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCA 142

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV-----PLTLARMPVDVDFG--------------I 164
            ++  AL +       IG+    +         +    P   D                +
Sbjct: 143 FLIEGALIAAGHRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIV 202

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R     V   +A  T +   HL      E    AKA++F     T    
Sbjct: 203 MEVSSHALALDR--VEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKLFRP-TMTSRAV 259

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEV 283
           +N DD +  +L  ++ A G   + + G     D+++       E    +E+   G++M  
Sbjct: 260 INGDDPWGRILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELATPGEAMAF 319

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N   T+ +++    ++D A+  L       GR +R     +     +  
Sbjct: 320 DIALPGQYNVANAATTIAVLAQAGVNLDRAVPGLEKA-LVPGRMQRVDLGPDSPRVYV-- 376

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +   P ++++A+S L        GR + VLG     G+  ++    +  V +  +   
Sbjct: 377 -DFAHTPQAVESALSAL-------PGRTLVVLGA---GGDRDEAKRGPMG-VAAARHADV 424

Query: 404 VWLSGFHVLA------LKDALPRSIHVHYSETMDGL 433
           V ++  +           + L  +  V  +E +DGL
Sbjct: 425 VVVTDDNPRTEDPATIRAEVLAGARQVPDTEVIDGL 460


>gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
 gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
          Length = 505

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/453 (21%), Positives = 170/453 (37%), Gaps = 45/453 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  ++ DSR + P   F A++G    G      A ++GA  ++   D   +  +LSIPV 
Sbjct: 33  VTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGAVAILW--DEAEAAPALSIPVL 90

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +  AL  +   +     +   ++A+TG+ GKT+  ++   AL  +      +G+  
Sbjct: 91  HLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFAGALEQLGVPTGVVGTLG 150

Query: 145 NH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                            I +   LA +  D    +     SH  E   +  L    +AV+
Sbjct: 151 TGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHGLEQGRMAGL-PVRVAVL 209

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      +  A AKA +F       T  LN DD+  + L  ++ A  I T  +
Sbjct: 210 TRLGSDHLDFHGSQQAYADAKARLFAW-PGLETAVLNADDALGQRLIRETTAEHILTYSA 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G S  AD   R+ +  S+     +++ G++  V     G     N+L TL  +  L   
Sbjct: 269 VGAS--ADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVGNLLATLAALRALGHS 326

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A+ A+S      GR +R+          L+   Y       +A  + L  + PH  G
Sbjct: 327 WPAAVDAVSRLRGVPGRMERFELPSG----ALLVVDYAHTE---QALAAALDALRPHTAG 379

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R IAV G     G+   +    +    S      V ++  +  +   A  R+  +   + 
Sbjct: 380 RLIAVFGC---GGDRDVTKRPAMGRAASAR-ADQVIVTDDNPRSEDPAAIRAAVLAGCDR 435

Query: 430 MDGLFLF---------IQSSLVDGDVVVV--KS 451
            +                +    GDV+++  K 
Sbjct: 436 PEACRELGDREAAVRAAVAEAGPGDVILLAGKG 468


>gi|269960242|ref|ZP_06174617.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835049|gb|EEZ89133.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
          Length = 485

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 154/432 (35%), Gaps = 47/432 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G + +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFADDADVRIENYHQEGQQGKFTVVREGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +      +  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLI 403

Query: 402 -SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D  AL R+I         +   ++ L   + + + DGD+++ + +
Sbjct: 404 MLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDVG--KVAKQL 473


>gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium vitis S4]
 gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase
           [Agrobacterium vitis S4]
          Length = 486

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 169/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               DL       + G   G V    + GI+ DSR + P   F A++G   DG  F+  A
Sbjct: 1   MKLRDLASGDFGDLTGPLDGPVGDVEITGITADSRKVEPGMLFVALQGVKADGAGFVADA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+  + +      +++P    D    AL  LA         T++A+TG+ GKT
Sbjct: 61  VARGAAAVLSGSHL-----DIAVPALVTDQPRHALALLAARVYSGQPETMVAVTGTAGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGI 164
           +         +      A IG+                  P+ L ++  D     V    
Sbjct: 116 SVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQEGVTHAA 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-I 223
            E     L + R     VR   A  T +   H+     + +  +AK  +F+ L   G+  
Sbjct: 176 MEASSHGLDQSRL--DGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLPKGSPA 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  DD +       +   G   + + G++ +    L++ +    +   E+  QG   EV
Sbjct: 234 VIFADDEWSAEAIRVARQAG-HDVRTVGRAGDF-LSLKRVEHFRHKQIAEIHHQGAIFEV 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L++ G+      +   A+KAL       G   R           L  
Sbjct: 292 DLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASG---RLELVGQANSGALAY 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++    VL+ + P   GR I V G   +  +  +    ++A+ L+      
Sbjct: 349 VDYAHKPDALE---KVLTAVRPFTSGRIIVVFGCGGDRDKGKRPIMGEIADRLA----DI 401

Query: 404 VWLSGFHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +  +   A  RS  +  +                 + L  GD ++V  K 
Sbjct: 402 VIVTDDNPRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKG 457


>gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
 gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
          Length = 554

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/492 (17%), Positives = 154/492 (31%), Gaps = 75/492 (15%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------- 82
           +S DSR +   + F A  G   DG  F+  A+ +GA   +V+   +A+            
Sbjct: 29  LSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLAAFADAYGLDASAR 88

Query: 83  ---IPVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              I  +   + L A +         +      ++AITG+ GKT+T   L  ALS+++ T
Sbjct: 89  AERIAAYAGPEGLKAASGPIAANYYGQPSQALEVLAITGTNGKTSTAWWLAQALSALRPT 148

Query: 137 YAC-----------------IGSYNNHIGVPLTL---ARMPVDVDFGIFELGMSHLGEIR 176
             C                 I         P+ L    R   D  F    L  S +G + 
Sbjct: 149 APCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGFSACALEASSIGIVE 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                    +A+ T     HL     +     AKA +FE   +     +N DD     L 
Sbjct: 209 RRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQAKAALFEW-PQLPAAVVNVDDPQGAELA 267

Query: 237 AKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               A     +++     +  A  +    +  +     E+    ++  +    +G +   
Sbjct: 268 RTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQTTSLQARTLGAYNVS 327

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------------------------ 330
           N+L  +  +  L   +  A+ A    HP  GR + +                        
Sbjct: 328 NLLGVIATLRCLGFALADAVAACGELHPVPGRMEFFSGGMSAAPGRPKQANIPSGGSEDT 387

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                 G   L    Y   P ++   +  L  ++    GR   V G   +   + +    
Sbjct: 388 AVPSVGGNTPLAVVDYAHTPDALAQILQALRPLAAQRGGRLWCVFGCGGDRDPVKRPLMG 447

Query: 391 DLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSL 441
           +     +  +   V L+  +  +         ++  LP                   ++ 
Sbjct: 448 E----AAARHADRVVLTSDNPRSEPPQAIIEQIQRGLPPGCDAWVEPDRAVAIARALAAA 503

Query: 442 VDGDVVVV--KS 451
              DVV+V  K 
Sbjct: 504 QAPDVVLVAGKG 515


>gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 499

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/470 (16%), Positives = 157/470 (33%), Gaps = 43/470 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
               ++  +    V G++ DSR     +AF A  G   D   F+  A+ KGA   +    
Sbjct: 6   TPAQAVEWLRSRGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQS 65

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALS 131
              +             +      +A A          ++++TG+ GKT+T   L  AL 
Sbjct: 66  GAEAFELDPDRTGFYSGLKAGSGPIAAAFYGMPSRDLAVMSVTGTNGKTSTAWWLAQALG 125

Query: 132 SIKKTYACIGSYNNHIGVPL------------------TLARMPVDVDFGIFELGMSHLG 173
            +    A        +GV                       R   +       +  S +G
Sbjct: 126 QVGGKEAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKACAMEASSIG 185

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF 231
                      H A+ T     HL     +    ++K  +F  +GL+      +N DD  
Sbjct: 186 IEELRMAGTVIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSWDGLKA---AVVNVDDDK 242

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L A+  +  +  +++ G  ++A    R     ++    +V    +S+ +  H IG +
Sbjct: 243 GAELAAELASTSL-DVWTVGVQRDARLVARGVTHSAQGLAFDVVEGRESVRLQSHVIGSY 301

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L  +  +  +   + +A+++ +   P  GR +            L+   Y   P 
Sbjct: 302 NVSNLLGVIAAMRTVGIPLQSAVQSCATLLPVPGRMECV----GGDSAPLVAVDYAHTPD 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           ++  A+  L  ++    G+   V G     G+   S    +  V +  +   V  S    
Sbjct: 358 ALAQALRALQPVAQARGGKLWCVFGC---GGDRDASKRPLMGAVAAAQSEHAVVTSDNPR 414

Query: 409 -FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG---DVVVV--KS 451
                A+    L   +   + +      + I  ++      DV+++  K 
Sbjct: 415 SEKPEAIVAQILLGMVECPHVDVQVDRAVAIADAIRSADARDVILLAGKG 464


>gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
 gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
          Length = 457

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 145/402 (36%), Gaps = 44/402 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       IPV    ++L  L +L          T IA+ G+ GKTTT  +L
Sbjct: 73  AVTSDNPEVVVARERGIPVIPRAEMLAELMRLR---------TGIAVAGTHGKTTTTSLL 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +           Y+  + +   L         G  E  ++   E       + P  
Sbjct: 124 ATIFTEAG--------YDPTVIIGGRLNAYGAGARLGQGEYLIAEADESDGSFLCLSPIA 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +V+T +   HL ++ GIE I  A  +    +   G   +  DD     +  + +    + 
Sbjct: 176 SVVTNVDADHLDHYDGIEAIDDAFVDFLNNIPFYGVNVVCLDDPGVARILPRVN----RP 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I ++G S  A  + R        S  EV L GK + E+  +  G H   N L  +G+   
Sbjct: 232 ILTYGFSDKARLRGRIID-SGAMSCFEVSLDGKRLGEMRLNHPGRHNVLNALGAIGVSLE 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS---- 361
           +   + T  +AL+ F    G G+R+     +    ++D+ Y  +PA +KA ++       
Sbjct: 291 VGIPLGTIAEALAKF---AGVGRRFERKGEKDGVVVVDD-YGHHPAEIKATLATARAVYP 346

Query: 362 ------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+ GD C   E +         +  +Y  S   + G    +L 
Sbjct: 347 ERRLVVAFQPHRFSRTKALFGDFCTCFEAADEL-----LLTEIYPASEAPIPGVSGESLG 401

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + +     V Y      +   +   L  GD+ V   + S 
Sbjct: 402 QGIRQVTKTKVAYYPDFAAMEAALPGILRPGDLFVTLGAGSI 443


>gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
 gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
          Length = 512

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA           I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 282 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 340

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 341 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 393

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 450 THPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
 gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
          Length = 475

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 110/431 (25%), Positives = 163/431 (37%), Gaps = 55/431 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
            GHD    A   GA  VVV+T        V +  S  IPV     +L  L +L       
Sbjct: 55  HGHD---AANIAGANAVVVSTAVSGDNPEVLAARSKRIPVVPRAVMLAELMRLKQG---- 107

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L+               IG  L  A     +  G F
Sbjct: 108 -----VAIAGTHGKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDF 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G   
Sbjct: 157 IVAEADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS-- 280
           L  DD     +         K +  +G +++A  +    +    Q    V   L G +  
Sbjct: 215 LCVDDPNVREIL----PFVSKPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRHLNGHAEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            ++VV +  G H  QN L  + I + L       +KAL  FH    R +RY     A   
Sbjct: 271 PLDVVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATADGT 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTL+D+ Y  +P  M A    LS       GRR  VL         ++    D  +VL
Sbjct: 331 GTFTLVDD-YGHHPVEMAA---TLSAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVL 385

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +    + V+ +G   +   D  AL R++ V       + E M+ +   I ++   GD
Sbjct: 386 GTVDALLLAEVYAAGEAPIVAADGRALTRALRVAAKVEPVFVEQMEEMPQAIMNAARPGD 445

Query: 446 VVVVKSSNSCG 456
           VVV   + S G
Sbjct: 446 VVVTMGAGSIG 456


>gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
 gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
          Length = 495

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 154/454 (33%), Gaps = 42/454 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82
           ++ + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G       
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I +TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKSAVMGT 146

Query: 143 YNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N     L                 R   +       L  S  G ++     +     V
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTSLETSSHGLVQGRVKKLNFVAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + ++  HL     ++  A AK  +F          +N DD+       +       ++ 
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSE-HACQRAIINVDDAVGAQWVKQLPHAIGVSLL 265

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +   +  A    R+ +       ++        E+    IG   A N+L+ L  +  L  
Sbjct: 266 AQPNTAQA-IWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +    +       P  GR + ++              Y   P +++ A+  L     H  
Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALH---VHCT 377

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419
           G+  A+ G   +     +     +AE  +      V L+  +  +         +   L 
Sbjct: 378 GQLWAIFGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMLAGLT 433

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                H          +   +    D++++  K 
Sbjct: 434 HPERAHIEHNRFQAASYALQNAGAQDIILLAGKG 467


>gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
 gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
          Length = 499

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 30  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 89

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 90  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 149

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 150 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 210 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 269 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 327

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 328 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 380

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 381 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 436

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 437 TYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 534

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/490 (16%), Positives = 143/490 (29%), Gaps = 63/490 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                ++Q              +  ++ DSR + P   FFA+ G   DGHDF   A  +G
Sbjct: 38  MKLSAVIQGTGARGEAAD-DHEIVLVTGDSREVVPGALFFALPGAVRDGHDFAAQAAARG 96

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +  +  +L      V     A+         R      +  +TG+ GKTT 
Sbjct: 97  AVAIVAERPVACAPAAL----LLVPSSRRAMAVAAANFHGRPADALRVAGVTGTNGKTTV 152

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARMPVDVDFGIFEL 167
             ++     +       +G+                         LA M       +   
Sbjct: 153 TYLVEACARAADLPVGVLGTVTQRFPGVERPASHTTPESTTLHAVLAEMRAAGTRAVVLE 212

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
             SH          +R   A  T +   HL     ++   +AK  +F E L   G   +N
Sbjct: 213 VSSHALAQER-VGGMRFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPDGVAVVN 271

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D +   L A+      + ++ +G   +   +                     + +   
Sbjct: 272 ARDPYGARLAAQL--GPGRRVWRYGTRADDTLRAEAVSTGLAGIAATFATPAGPIAIRSP 329

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N+L   G+   L    D   + LS      GR +R       G    I   Y
Sbjct: 330 LVGAHNLENLLCAAGLALALGIAPDAVGRGLSASAGAPGRLERI-----DGRGVSIFVDY 384

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                ++  A+  L  ++P    R + V G   +     +    ++A          V +
Sbjct: 385 AHTDDALGRALEALRALAP---RRLLCVFGCGGDRDRGKRPLMGEVA----ARGADLVVV 437

Query: 407 SGFHVLA------LKDALPR-----------------SIHVHYSETMDGLFLFIQSSLVD 443
           +  +         + D LP                  +                 S    
Sbjct: 438 TSDNPRTEAPEAIIADVLPGLERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHP 497

Query: 444 GDVVVV--KS 451
           GD V+V  K 
Sbjct: 498 GDAVLVAGKG 507


>gi|304310319|ref|YP_003809917.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
 gi|301796052|emb|CBL44256.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
          Length = 480

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 159/422 (37%), Gaps = 46/422 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
            I HA +   G  ++VV+T + ++   L       IPV    ++LG L +          
Sbjct: 68  HIGHAAKNVDGTDVIVVSTAIDSANPELDAARERRIPVVPRAEMLGELMRYRYG------ 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++   L+               IG  L  A     +  G F +
Sbjct: 122 ---IAVAGTHGKTTTTSLIASILAEGG------SDPTFVIGGRLNSAGTNAKLGTGRFLV 172

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P ++V+T I   H+S +      +          L   G   L 
Sbjct: 173 AEADESDASFL--HLQPMVSVVTNIDFDHMSTYNGDFNRLKETFLRFLHNLPFYGLAVLC 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVH 285
            DD     +  +      + + ++G    AD Q    +    QS   V +   +S+ +  
Sbjct: 231 VDDPTIREILPQIS----RPVVTYGIDHEADIQAVDIQNVGLQSTYRVLRRDAESLSITL 286

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  + + S      D   +AL  F     R +        G    + + 
Sbjct: 287 NIPGRHNVLNSLAAIAVASDENIAGDAIARALEKFQGVGRRFQIQGEIPIMGGTVTLVDD 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I+ + Q  P    R + +          ++  + D  +VLS  ++    
Sbjct: 347 YGHHPREVAATIAAVRQSWPS--RRLVMIY--QPHRYSRTRDLYEDFVQVLSDVDVLLLM 402

Query: 403 HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +A  D  +L RSI +       + E    L   ++  L++GDVV+ + + +
Sbjct: 403 EVYSAGEEPIAGADSRSLCRSIRMRGAVEPIFIEEPSVLPSVLEKHLLNGDVVLTQGAGN 462

Query: 455 CG 456
            G
Sbjct: 463 VG 464


>gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 269

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 9/253 (3%)

Query: 8   HDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +     G  +   + P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA
Sbjct: 6   KQIAACTGGSFVVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              +V   +  ++      L   V  V D   A+  +A   R      +IA+TGS GKTT
Sbjct: 66  VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK ++   L+S   T A  G+ NN +GVP TL     D    + E+GM   G++  L   
Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSH 240
           VRP   ++  +  +H+      E IA AKAE+   L +  G  F+N DD + + ++  + 
Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245

Query: 241 --ALGIKTIYSFG 251
             A  ++T+   G
Sbjct: 246 LDARRVETVLFDG 258


>gi|268318240|ref|YP_003291959.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262335774|gb|ACY49571.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 479

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 148/403 (36%), Gaps = 44/403 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++LG L ++            I + G+ GKTTT  M+ +            G 
Sbjct: 101 IPLIPRAEMLGELMRMKFG---------IGVAGTHGKTTTTSMVGLV--------VSEGG 143

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           ++  I V   +A    +   G  ++ +    E       + P +AV+T+I P HL  +  
Sbjct: 144 FDPTIIVGGKVAAFESNAVAGEGDIIVIEADEYDRTFLRLTPTLAVVTSIEPEHLDIYRD 203

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++++ +A  +    +   G   L  DD   + L  +      + + ++G ++ A+ +   
Sbjct: 204 LDDLMAAFRQFASSVPFFGAAILCLDDPNVQALVGQL----DRRVRTYGLARQAEIRAEN 259

Query: 263 WKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +     S  +V LQG+ +  +     G H  +N L  + +   L    +     L+ F 
Sbjct: 260 VQFEGFGSRFDVLLQGEPLGTIQLQVPGLHNVRNALAAVAVGLELDIPFEAIQAGLARFT 319

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +R           L+ + Y  +P  ++A +   +   P  + R +AV      +
Sbjct: 320 GVRRRFERLGEVHG----VLVIDDYAHHPTEIRATLEAAATAMP--DRRLVAVF--QPHL 371

Query: 382 GELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETM 430
              ++ F  D A          V  +Y      + G     + +   R  H  VHY    
Sbjct: 372 YSRTRDFQEDFARSFVDADVLVVTDVYGAREAPIPGITGERIAELARRFGHRDVHYVPER 431

Query: 431 DGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
             +  ++    L  GD V+   +     +R    LL+     +
Sbjct: 432 RQIPGYLLEHVLRPGDAVLFMGAGDI--WRAARELLDYLKLTE 472


>gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
 gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
          Length = 486

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 166/476 (34%), Gaps = 53/476 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ ++   +       V  +  DSR I     F  IKG  +DGH F   A +     
Sbjct: 4   SQLLEHLEYTCLQGSTDVKVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFAAEAAE---KG 60

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125
             V           S+ V  VD+   A+  ++ A       + T IA+TG+ GKTTT  M
Sbjct: 61  AAVLVVEDEVEVPDSVTVIKVDNTRYAMALISAAWFGYPAEELTTIAVTGTKGKTTTTYM 120

Query: 126 LTIALSSIKKTYACIGSY-----NNHIGVPLTL---------ARMPVDVDFGIFELGMSH 171
           +   L         IG+        HI V  T           R   + D  +  +  S 
Sbjct: 121 VKSLLEEAGHKVGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKMAEEDCDVVVMEASS 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            G     T  +     + T ++P H+         E  S KA++F      G    N DD
Sbjct: 181 QGFKLDRTAGIMFDYGLFTNLSPDHIGPNEHKDFAEYLSCKAKLFNQCR-YGYA--NIDD 237

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHH 286
             F  +   +       I +FG ++NAD      +   ++ ++ V    K     ++   
Sbjct: 238 EHFAEITKNATC----PIETFGLNENADLVAYDVELTRDRDFLGVDFGLKGTCEGKISCG 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + I   +   V+   KAL  F  K     R +       +TLI + Y
Sbjct: 294 VPGTFNVHNALGAISIAGHMGVTVEQMNKALRHFSVKG----RVQIVPTGYDYTLIID-Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  ++++ ++ L    P    R I++ G     G  S+    ++ EV        +  
Sbjct: 349 AHNAVALESILNTLRAYDPP---RLISLFGC---GGNRSKLRRYEMGEVSGKLADFTIIT 402

Query: 407 SG----FHVLALKDAL---PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           S         A+ D +    +     Y   +D      +       GD+VV+  K 
Sbjct: 403 SDNPRFEEPQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKG 458


>gi|218780970|ref|YP_002432288.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
 gi|226711863|sp|B8FBR7|MURC_DESAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218762354|gb|ACL04820.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 155/421 (36%), Gaps = 49/421 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KG  +VVV++ +              IPV    ++L  L +L            +AI G+
Sbjct: 63  KGCDVVVVSSAIRQENPETASAREQGIPVIPRAEMLAELMRLKY---------SVAIAGA 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L++        G  +  + +   L  +  +   G  E  ++   E  
Sbjct: 114 HGKTTTTSIVADVLAA--------GGLDPTVVIGGKLLSIGSNAKLGHGEFIVAEADESD 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P IAV+T I   H+ ++  ++EI  A A+  + +   G   L  D    + L 
Sbjct: 166 GSFLKMSPSIAVVTNIDREHMDHYKDMDEIKDAFAQFVDKIPFYGLSVLCLDSEPVQDLI 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQN 295
              +    K   ++G +  AD Q          S   V+   K +  +  +  G H   N
Sbjct: 226 PFIN----KRYVTYGLTTQADLQAGDVTTEGLTSRFTVRHNKKRLGRITLNLPGLHNVYN 281

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L ++ +   L    +      +      G  +R       G   ++D+ Y  +P  ++ 
Sbjct: 282 SLASIAVGLELNVPFENIK---AALESLSGVHRRLETKGKVGGIVVMDD-YGHHPTEIRT 337

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
            +  ++   P    RR+ V+         +QS   D A          VL +Y      +
Sbjct: 338 TLQAVNDSYPE---RRVGVIFQ-PHRYSRTQSLFEDFARSFYQADYLVVLPIYPAGEKPI 393

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G   ++L  AL    H H  ++ + +     +  ++ +GDV++   +     YR+    
Sbjct: 394 PGVDSVSLCKALKAYGHKHVIHAPSKESALQELDKTVREGDVLITLGAGDV--YRVGESF 451

Query: 465 L 465
           L
Sbjct: 452 L 452


>gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 498

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 154/428 (35%), Gaps = 45/428 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72

Query: 78  IGSLS-------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            G          I  F + + +  L           +  II ITG+ GKTT  +++    
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRF-YKEPGKRLKIIGITGTNGKTTVTQLINQWS 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------IFE-------LGMSHLGEIR 176
           + +    A +G+  N     L                   + E       + +S  G I+
Sbjct: 132 TILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQ 191

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V  +IA+ T +   HL     +E+  SAK  +F    K   I LN DD + ++  
Sbjct: 192 HRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS-THKVKKIILNADDQYGKIWL 250

Query: 237 AK-------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288
            K       +  +  +    +             +Q +  S ++  +    +  +    I
Sbjct: 251 KKLLNFYTVAVTIQNRKQKKYSTKW---INATNIEQNNNNSIYITFESSWGTGRISSCLI 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L++L  +  L   +   I       P +G   R          T I + Y  
Sbjct: 308 GRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQG---RMELFSYVKKPTFIID-YAH 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  ++ +     H +     + G   E  +  +     +AE +S      V ++ 
Sbjct: 364 TPDALKKTLNAIHS---HYQRYIWCIFGCGGERDQKKRPIMGAIAEKMS----DKVIITN 416

Query: 409 FHVLALKD 416
            +    K+
Sbjct: 417 DNPRNEKE 424


>gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
 gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
          Length = 503

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 155/478 (32%), Gaps = 42/478 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL ++       +    +  I+ DSR + P   F  + G   DG  F   A+  GA 
Sbjct: 5   LHALLHSVGLPVPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGAS 64

Query: 67  LVVVNTDMVASIGSLS-IPVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTT 122
            V++ +   A++       V  V D +         A       +  +I +TG+ GKTTT
Sbjct: 65  AVLIGSAAAATLPPEQSDAVLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++    S+  +  A  G+  N        A                           E
Sbjct: 125 THLIEHLSSACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQLTAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTI 223
           +    L + R      R   AV T +   HL     +     AKA +F      ++    
Sbjct: 185 VSSHALDQHR--VAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQF 242

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD + + L  +      ++  S G S +A+  +      S      +         
Sbjct: 243 VVNIDDPWGKHLAERLGDRCWRSSLSEG-SAHAELTMSDLVMGSSGVEGRLLSPLGEGSF 301

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  +G++      ++  ++A+S F    GR +R       G    + 
Sbjct: 302 QSPLLGRFNVMNLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVL 361

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  + +A++      P  +G+ I V G     G+  +     +A + +    + 
Sbjct: 362 VDYAHTPDGLSSALNACR---PFADGKLICVFGC---GGDRDRGKRSQMAAIAAELADAV 415

Query: 404 VWLSG----FHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S          +     + +P    +                    D+V++  K 
Sbjct: 416 VVTSDNPRTEDPQQILNDVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKG 473


>gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
 gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
          Length = 490

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 158/483 (32%), Gaps = 56/483 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL  A+Q  +    P     V G++ ++  + P  AF AI+G  +DGH F+  A  
Sbjct: 1   MRLSDLAAALQLPAPETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKT 120
            GA  V+   + +A   +  +P   V +     A    A+A     +  ++ +TG+ GKT
Sbjct: 61  AGAVAVLG--EGLADGQTSPLPYLTVPNARAALADAAAALAGHPSRELKVVGVTGTDGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI------------------GVPLTLARM-PVDVD 161
           TT  +    L S       + +    +                   V  TL  M      
Sbjct: 119 TTSWLTRHLLRSAGLATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQ 178

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L   R     V   +AV T ++  HL     ++   + K ++ E      
Sbjct: 179 ATVLEASSHALSLDR--VRGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLVERAR--- 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN DD +   L+  +     +T YS  ++++AD++ +  ++        V       
Sbjct: 234 FAVLNVDDPWTAQLRGIAPG---ETTYS-AENQHADWRAQDIEERHSGLHFRVVSPAGDF 289

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     IG     N L  +     L A        L+ F    G   R            
Sbjct: 290 QAELPMIGRFNVANALAGMAAAHHLGATALQLQAGLASFRGVPG---RMELVPGGATSPR 346

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   +   P S++ A+  L   +    G    V+G     G         L EV +    
Sbjct: 347 VIVDFAHTPPSLEKALGTLRATTA---GHLWVVIGSAG--GPRDPYKRAPLGEVATRL-A 400

Query: 402 SHVWLSGFHVL--ALKDALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVV- 449
            H  L+        L+D L         E                +  +    GD V++ 
Sbjct: 401 DHAILTEEDCRDTPLQDILNEMERGAREEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 198

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++  AI    + +     V+ +  DSR       F  + G   DGHD++ +AV  G
Sbjct: 3   MQLSEIANAIGC-DLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D      +  IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+
Sbjct: 61  AVAALWQKDHANRPEN--IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P
Sbjct: 119 MVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCP 178

Query: 185 HIAVITTIAPAHLSNFS 201
            + VIT I  AH+  F 
Sbjct: 179 DVCVITMIGEAHIEFFG 195


>gi|227514324|ref|ZP_03944373.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087296|gb|EEI22608.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 263

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 16/273 (5%)

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   ++IA AK EI  GL + GT   + D+       AK      +   +FG+  + D  
Sbjct: 1   FGSRDKIADAKMEITHGLAEDGTFVYDGDEPLLRERAAKLS----QQTKTFGRQLDDDLY 56

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   +     V  Q          +G +   N L  + +  ++        +A   
Sbjct: 57  ATSVNPDVDHVSFTVN-QWPDEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQA--- 112

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               E    R           ++ + YN+NP ++K  ++ L+ I     G+R+AVLGDM 
Sbjct: 113 LQNVELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATIP--VAGKRVAVLGDML 170

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGL 433
           E+GE S   H  L + +   ++  V+L G  + ALKDAL ++      +H + +     L
Sbjct: 171 ELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRKAL 230

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 231 TDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 263


>gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 339

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 17/317 (5%)

Query: 24  QGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI- 78
           +  V+  S+DSR I         +FA KG   DG  F+ + +  G      + +  +   
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 79  ----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +  +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKY 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ 
Sbjct: 145 KTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISY 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKS 253
           AH+  F  ++ IA  K++I    +      +N  + +   L+ ++  A     I  F   
Sbjct: 205 AHMQAFKELQAIAFEKSKIIG--KNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFE 262

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++ +     +   +   +G   E     +G H   N +  + +   L       
Sbjct: 263 N---LSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGMREKEI 317

Query: 314 IKALSVFHPKEGRGKRY 330
            + L     ++GR +  
Sbjct: 318 KEGLIETAFQKGRAEIL 334


>gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
 gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
          Length = 495

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 26  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 85

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 86  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 145

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 146 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 206 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 265 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 377 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 433 TYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
 gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
          Length = 512

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 155/455 (34%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI +A+ +GA LV+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQN-AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 282 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 340

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            + +  +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 341 FEKNALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 393

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 449

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 450 TYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|127514380|ref|YP_001095577.1| UDP-N-acetylmuramate--alanine ligase [Shewanella loihica PV-4]
 gi|166224729|sp|A3QIM0|MURC_SHELP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126639675|gb|ABO25318.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella loihica PV-4]
          Length = 484

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 161/424 (37%), Gaps = 50/424 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H+  +  GA +VVV+T + AS   +       IP+    ++L  L +          
Sbjct: 70  FIGHSADQVEGADVVVVSTAIDASNPEILAAQERRIPIVRRAEMLAELMRYR-------- 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              +A+ G+ GKTTT  ++           T+   G  N+      T AR+     + I 
Sbjct: 122 -HGVAVAGTHGKTTTTSLIASVYGQAERDPTFVIGGLLNS----AGTNARLGKS-RYLIA 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++V+T I   H+  +    E++ S   +    L   G   
Sbjct: 176 EADESDASFLH-----LQPMVSVVTNIEADHMDTYEGDFEKLKSTFVDFLHNLPFYGVAV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
              DD     +  +      + + ++G S++AD Q   ++Q    S   V+ +G   +++
Sbjct: 231 ACIDDPVVREILPRI----GRKVVTYGFSEDADVQALNFEQQGYSSRFTVRREGMADLDL 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H   N L  + + +    + +  I+AL  F     R ++           ++ 
Sbjct: 287 RVNLPGRHNVLNALAAIAVATEDEIEDEAIIRALDEFQGIGRRFQQLGEFTTTAGEVMLV 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL----- 398
           + Y  +P+ + A I       P  + R + +          ++  + D  EVL+      
Sbjct: 347 DDYGHHPSEVAATIKAARSGWP--DKRLVMIY--QPHRYSRTRDLYDDFVEVLAQVDCLL 402

Query: 399 ----YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSS 452
               Y+     + G    AL  ++ +   +   +    + L   +   L  GD+++ + +
Sbjct: 403 LLDVYSAGEAPVPGADSRALCRSIRQRGQLDPIFVAEPEQLQTILPGVLQGGDLLLTQGA 462

Query: 453 NSCG 456
            + G
Sbjct: 463 GNIG 466


>gi|323497896|ref|ZP_08102905.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
 gi|323316941|gb|EGA69943.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
          Length = 486

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 140/401 (34%), Gaps = 40/401 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +  +  IPV    ++L  L +             IA+ G+ GKTTT  ++T   S     
Sbjct: 100 AARAARIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +                I E   S    +      ++P ++++T I   H
Sbjct: 151 ---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADH 202

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E +     +    L   G   +  DD     L  K      + + ++G +++
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELVPKIS----RQVITYGFAED 258

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q  +Q    V  QGK  +++  +  G H A N    + + +      +  +
Sbjct: 259 ADVRIDNYRQEGQQGKFTVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDIADEAIL 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            A++       R              ++ + Y  +P  +   I      +   + R + +
Sbjct: 319 NAMAGTQGTGRRFDHLGEFDTGNGAVMLVDDYGHHPTEVDVTIQAAR--NGWEDKRLVMI 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH---- 425
                     ++  + D A VL   ++     V+ +G   +   D  AL R+I       
Sbjct: 377 F--QPHRYSRTRDLYDDFANVLEQVDVLILLDVYSAGEKPIPGADGRALCRTIRGRGKLD 434

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 435 PIFVPDSQALPAVLANVLQDGDLVLTQGAGDVG--KVAKQL 473


>gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 495

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 156/477 (32%), Gaps = 63/477 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            + +    I    Q   + +  ++++I     F  IKG  +D HD I   V++GA  VVV
Sbjct: 7   AEGLDIEIISGELQDEFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAKAVVV 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTI 128
             D    I    I V  V D   AL +L+ A       K  II ITG+ GKTT+  ML  
Sbjct: 67  QKD----IKRDDICVIKVSDTRVALARLSAAYFSHPAKKMKIIGITGTKGKTTSSYMLQK 122

Query: 129 ALSS-------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            L               I  T+    +            +  +D +     + +S    +
Sbjct: 123 LLGQNAKVGLIGTNGITIGDTHRSTLNTTPESYELHKTFKECLDANCEYVVMEVSSQAVM 182

Query: 176 RFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                 +   I + T I+  H+        +E    K+  F+  + T    +N +D    
Sbjct: 183 LKRIEGICFDIGIFTNISHDHIGPDEHKDFDEYLMYKSLFFKQCKNT---IVNIEDEHAN 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQ----------LQGK 279
            +   S +   K  Y+FG  K  DF ++  +  S      + ++++          +  +
Sbjct: 240 YVLKTSDS---KQKYTFG--KGGDFDIKNIEYISNKDFLGTRIDIKCREEIAEKYSVNNE 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             ++     G     N L  L    I          A          G+      +  F 
Sbjct: 295 ISDIYVGIPGEFNVYNALSALSAAIICGVKEADLKNA---LKDSRVNGRMEVAYTSHDFN 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SL 398
            +ID  Y  N  S ++ I  L    P    R + V G     G  S+     + E+   +
Sbjct: 352 VVID--YAHNAISTESLIHTLRNYKPK---RLVIVFGS---GGNRSKDRRYSMGEICGKM 403

Query: 399 YNISHVWLSGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + S V          +D +        P                +   +   GD++
Sbjct: 404 ADFSIVTADNSRFEKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLI 460


>gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
 gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
          Length = 491

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 157/476 (32%), Gaps = 56/476 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F + L+ +    +       V  +  DSR       F  +KG   D H+FI   V  G
Sbjct: 1   MKFKEWLKDLTYEVLQGSLDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122
             ++VV        G   +    V +   AL  L+ A       K   I +TG+ GKTTT
Sbjct: 61  VQILVVERKTELPDG---VTAILVHNAREALALLSAARFGYPAEKMVTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFE 166
             M+   L +  K    IG+    IG  +T                        ++ + E
Sbjct: 118 THMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHMAEAGCEYMVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +        R     +     + T I+P H+     +  EE    K+ IF   +      
Sbjct: 178 VSSQAFKMHR--VDGISFDYGLFTNISPDHIGPDEHADFEEYLYYKSRIFSCCK---VGI 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +N DD  +  +   +       +YSF   K + DF+    +  ++  ++ ++   K +  
Sbjct: 233 MNGDDEHWAEVVKDATC----RLYSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDIKGISQ 288

Query: 284 ---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +  G     N L  + ++S L    +     L   +       R     +    T
Sbjct: 289 LSVRVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNVNG----RMEIVYSSETCT 344

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y  N  SM++ +S L    P    R + V G     G  S+   I + +      
Sbjct: 345 VIVD-YAHNAVSMESLLSTLRDYRPK---RLVCVFGC---GGNRSKDRRITMGDSAGRLA 397

Query: 401 ISHVWLSG-------FHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVV 447
              +  +          ++A            + E  D      +  +    GD++
Sbjct: 398 DFTIITADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMI 453


>gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 556

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 149/482 (30%), Gaps = 76/482 (15%)

Query: 5   WTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               +L +A    +            V+ ++ DSR       F A+ G   DGHD+I  A
Sbjct: 1   MQLAELFRAAELPLPAKISRAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYIADA 60

Query: 61  VQKGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIA 112
           V +G  L++              +   ++      D   AL  L  A          +I 
Sbjct: 61  VARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLLLIG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARM- 156
           ITG+ GKTT   +L   ++S       IG+ N                       LA M 
Sbjct: 121 ITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMR 180

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE- 215
              V   + E+    L  ++     V   +A+ T ++  HL     +E   +AK  +FE 
Sbjct: 181 QAGVTHVVMEVSSHAL--VQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQ 238

Query: 216 GLEKTGTIFLNYD------------------------DSFFE-----LLKAKSHALGIKT 246
            L+      +                           D  +       L  ++ A     
Sbjct: 239 HLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAPR 298

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++  G +   + +L   +         +       E+    +G     N+L        L
Sbjct: 299 LWRCGFASG-ELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    AL+V  P  GR +R+     +G    +D  Y   PA+++  +  L      
Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF--VDRRGMKVFVD--YAHTPAALEQVLRTLR----P 409

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI 422
              R I + G     G+  +     + E+        V  S         A+  A+   +
Sbjct: 410 HSRRLIVIFGC---GGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGV 466

Query: 423 HV 424
             
Sbjct: 467 KG 468


>gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 476

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 152/436 (34%), Gaps = 50/436 (11%)

Query: 56  FILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H+ +   GA +VV+      +   V +     IPV     +L  L +          
Sbjct: 67  FIGHSAENIIGASVVVISSAIHGDNPEVMAAKKARIPVIQRAQMLAELMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +            N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMVSMIYAQAGLD---PTFVNGGLVKSAGTNAHLGCSRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P I+++T I P H+       +E+          L   G   L 
Sbjct: 175 DESDASFLH-----LQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGLAVLC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD+    L  +      + + ++G S+NAD+++  ++Q   Q    V    G+ ++V+ 
Sbjct: 230 ADDADLMSLVPQV----GRQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERIDVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  + AL+ F     R  +    +      ++ + 
Sbjct: 286 NVPGRHNALNATAALVVAKEEGIKNEAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    Q            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    AL  ++     V          L   I   + DGD+++ + + 
Sbjct: 401 LDVYPAGESPIVGADSKALCRSIRNLGKVDPILVSDTAQLGDVIDQIIQDGDLILAQGAG 460

Query: 454 SC-GFYR-LINLLLEE 467
           S     R L+   ++E
Sbjct: 461 SVSKLSRQLVERWMKE 476


>gi|253998173|ref|YP_003050236.1| UDP-N-acetylmuramate--L-alanine ligase [Methylovorus sp. SIP3-4]
 gi|313200242|ref|YP_004038900.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
 gi|253984852|gb|ACT49709.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. SIP3-4]
 gi|312439558|gb|ADQ83664.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
          Length = 465

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 97/390 (24%), Positives = 145/390 (37%), Gaps = 43/390 (11%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV     +L  L +             IA+ G+ GKTTT  ++   L+            
Sbjct: 90  PVIPRALMLAELMRFRQG---------IAVAGTHGKTTTTSLIASILAEAG--------M 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
           +    +   L     +   G  E  ++   E       + P I+V+T I   H+  +   
Sbjct: 133 DPTFVIGGRLEAASANARLGTGEFIVAEADESDASFLHLSPVISVVTNIDADHMDTYGHD 192

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E++  A  E  + L   G   L  DD     +         K I  +G S++A  + + 
Sbjct: 193 FEKLKGAFVEFLQQLPFWGMAVLCIDDPNIRAILPSV----TKPIMPYGFSEDARIRGKN 248

Query: 263 WKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +  +      VQ         +V  +  G H   N L  + + S L       IKAL  
Sbjct: 249 VRADNGTMHFTVQRINGVTTEFDVTLNLPGNHYVLNALAAIAVASELNVPDAAIIKALRE 308

Query: 320 FHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           F     R +RY    A N G FTLID+ Y  +P  M+A I+      P   GRR  VL  
Sbjct: 309 FKGVGRRFERYGEVPARNGGQFTLIDD-YGHHPVEMQAVIAAARGAFP---GRR-LVLAF 363

Query: 378 MCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------Y 426
                  ++    D  +VLS  +    S V+ +G   +   D  AL R+I V       +
Sbjct: 364 QPHRYTRTRDCFEDFVKVLSSADAVLLSDVYPAGEAPIVAADGRALVRAIRVAGKVEPLF 423

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            ET   L   I     DGDVV+V  + S G
Sbjct: 424 VETTAELPEAILGVAQDGDVVIVMGAGSIG 453


>gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 516

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 147/472 (31%), Gaps = 67/472 (14%)

Query: 18  SIGIVPQGFVNGISI----------DSRSIAPQEAFFAIKGPH----YDGHDFILHAVQK 63
           ++ I P   ++ +            DSR I   + FFA    H     DG  FI  A+  
Sbjct: 4   ALNIEPNDLIDHLHTLANSSAKVGADSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALAN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  VV +   +          F V+ +   + +           +  +I +TG+ GKT+
Sbjct: 64  GAAAVVFDPAGIDPQFQDHPQCFAVESLAEKVGEFCAQWYDYPSKQLKVIGVTGTNGKTS 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFEL 167
             + L  AL       A +G+        L              T  R  +D       +
Sbjct: 124 ITQWLAQALDEPNHRTAVLGTLGTGFPTALVMTGYTTPDAPKLQTQLRELLDGGAQQVAM 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFL 225
            +S     +        + AV T +   HL     + + A AKA++F+  GLE      +
Sbjct: 184 EVSSHALHQERIAGTWFNCAVFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLEH---AVI 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWME 273
           N DD F   L     A     ++++G +  A                +            
Sbjct: 241 NLDDPFGRELAINLLAKDSIQVWAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTT 300

Query: 274 VQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                K +  +    +G     N L    ++       + A K +S   P  GR +    
Sbjct: 301 FVYGDKGTYPLHIPLLGEFNLSNALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPL 360

Query: 333 ALNQG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             NQ     L    Y   P +++  +  L  ++    G+   V G     G+   +    
Sbjct: 361 GKNQKSEGLLAVVDYAHTPDALQKTLQALRPLAEQRGGKLWCVFGC---GGDRDITKRPQ 417

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +  V   +   H+ ++  +                SE    +   I   L  
Sbjct: 418 MGLVAEKF-ADHIIITSDNSR--------------SEDPQAIIQMIADGLNP 454


>gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
 gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
          Length = 519

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 168/482 (34%), Gaps = 55/482 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   +AFFA      D   FI  A+++GA  
Sbjct: 12  QQIADALDWLRARVQPGA---HLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAA 68

Query: 68  VVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+V  +  +     S  + V  ++++ G++               + +TG+ GKT+  + 
Sbjct: 69  VLVQPEGFSGALDASSMLAVPRLNELAGSIASAW-YGDPSDHMLTVGVTGTNGKTSCSQW 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           ++ AL+++    A IG+    +   L               +LA++       +  E+  
Sbjct: 128 ISAALTALGTRCAIIGTLGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     IAV T +   HL      E   +AKA +F    +     +N DD
Sbjct: 188 HALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKARLFAW-PELRAAVINRDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEVQL- 276
           +    L A +   G     ++G               +A       +  +  +   +   
Sbjct: 245 AVGRRLLASTR--GHARTIAYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTS 302

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                +V    +G     N+L  LG +       D A+  L+      GR +R      Q
Sbjct: 303 DWGEADVEVQTLGAFNVSNLLGVLGALLAANVPFDAALAELAKLESVNGRMQRL-GGRLQ 361

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+   Y   P +++  +  L  ++    G  I + G   +     +     +AE L
Sbjct: 362 NDEPLVVIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKL 421

Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDV 446
           +      V ++  +  +         +   +  +      E     +   I+S+  +  +
Sbjct: 422 A----DGVVVTSDNPRSEDPQSIIGQIAAGMKDASKARRIEDRASAILQAIRSAAREDVI 477

Query: 447 VV 448
           V+
Sbjct: 478 VL 479


>gi|289447785|ref|ZP_06437529.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420743|gb|EFD17944.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
          Length = 301

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 26/299 (8%)

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  + PAHL  F   E IA  KAE+ + +  +G + LN DD     +   + A     + 
Sbjct: 1   MLNVGPAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAA----RVV 56

Query: 249 SFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              +    D            +    +       EV     G H   N L    +     
Sbjct: 57  RVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECG 116

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--P 365
           A V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+  P
Sbjct: 117 ASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQP 174

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-------HVLALKDAL 418
               R  AVLG+M E+GE + + H  +  +    ++S + + G        H  A+ +  
Sbjct: 175 EATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGA 234

Query: 419 PRSIHVHY----------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             S                   D     +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 235 WGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 293


>gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 498

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 155/428 (36%), Gaps = 45/428 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72

Query: 78  IGSLS-------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            G          I  F + + +  L           +  II ITG+ GKTT  +++    
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRF-YKEPGKRLKIIGITGTNGKTTVTQLINQWS 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------IFE-------LGMSHLGEIR 176
           + +    A +G+  N     L                   + E       + +S  G I+
Sbjct: 132 TILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQ 191

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V  +IA+ T +   HL     +E+  SAK  +F    K   I LN DD + ++  
Sbjct: 192 HRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS-THKVKKIILNADDQYGKIWL 250

Query: 237 AK-------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288
            K       +  +  +    +             +Q +  S ++  +    +  +    I
Sbjct: 251 KKLLNFYTVAVTIQNRKQKKYSTKW---INATNIEQNNNNSIYITFESSWGTGRISSCLI 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G+    N+L++L  +  L   +   I       P +G   R          T I + Y  
Sbjct: 308 GHFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQG---RMELFSYVKKPTFIID-YAH 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  ++ +     H +     + G   E  +  +     +AE +S      V ++ 
Sbjct: 364 TPDALKKTLNAIHS---HYQRYIWCIFGCGGERDQKKRPIMGAIAEKMS----DKVIITN 416

Query: 409 FHVLALKD 416
            +    K+
Sbjct: 417 DNPRNEKE 424


>gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
 gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
          Length = 496

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 168/505 (33%), Gaps = 56/505 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++      + I      +        +  DSR ++ +  F A+ G   +G D++    +K
Sbjct: 1   MFWLEQFERYIDHTGERVDVNYPFIQVKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEK 60

Query: 64  GAGLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           G    VV T +     +  S  + + G DDV   L+ +         + +I +TG+ GK+
Sbjct: 61  GCRYAVVPTYVAKGLIASNSTDLNIIGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKS 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIF 165
           +    +     ++  + A IG++       L               TLA+   D    + 
Sbjct: 121 SVSYYIAQLADAMGLSGAIIGTFGVGKLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               SH  +   +  +     AV T +   HL     +E  A+AK ++F  L+       
Sbjct: 181 FEASSHALDQDRVAGI-EIDTAVFTNLTQDHLDYHGTMESYATAKRKLF-RLDTLKHAVF 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                +   +   S          +G+  + DF +R     S      +  +     V  
Sbjct: 239 CSKSDYCNFMAEDSKGDKS----YYGERPSDDFVIRDVTYHSLGCSFLLLTKSGHYSVEL 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N +  L  +  L  D    I +L+      GR +R   +       ++ + 
Sbjct: 295 PLMGEFNVDNAVAALASLWPLFDDKVALISSLTSLKGAPGRMERVTLSEGANVPVVLVD- 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++  A+  L   + H +G    V G     G+  +    ++           V 
Sbjct: 354 YAHTPDALSVALKAL---AVHSKGPITCVFGC---GGDRDKGKRPEMMRAALDL-ADKVV 406

Query: 406 LSGFHVLA------LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS- 451
           L+  +  +      ++DAL          V   E       F  ++    ++V+V  K  
Sbjct: 407 LTTDNPRSEIPSEIMQDALSGVAECERQRVILDEDRRSAIEFAIATASINEIVLVAGKGH 466

Query: 452 ----------SNSCGFYRLINLLLE 466
                     S+       +N L +
Sbjct: 467 ETYQEIGGVKSHFDDREEALNALKK 491


>gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 163/454 (35%), Gaps = 44/454 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             + G+++DSR++ P E FFA+ G   DG  FI  A+       V             + 
Sbjct: 20  TQITGLAVDSRAVKPGELFFALAGAKTDGARFIAQAIA---AGAVAVAGDHLPTDEQGVA 76

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  VD+   AL   A     R  ATI A+TG+ GKT+                A IG+  
Sbjct: 77  LVRVDNPRRALALAASKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRQGLASASIGTIG 136

Query: 145 -----------NHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                           P+ L RM       DV     E     L + R     VR     
Sbjct: 137 LIAPQRSVYGSLTTPDPIALHRMVDEIASEDVTHLALEASSHGLDQYRL--DGVRIAAGG 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T ++  H+     +    +AK  +F  L   +G   ++ D      + A + A  ++ +
Sbjct: 195 FTNLSRDHMDYHPTVAHYLAAKLRLFRDLVAPSGAAVISADHDCSAEVVAAARARKLR-L 253

Query: 248 YSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + G+     A  +LR          + ++ QG+   ++   +G    +N L+  G+   
Sbjct: 254 ITVGRNGDPGAGIKLRSASIDGFAQRLILEHQGRMQNLLLPLVGEFQIENALVAAGLAIG 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             +D D+  +AL+     +G   R      +    +  + Y   P ++  A+  L    P
Sbjct: 314 TGSDADSVFEALTQLEGAKG---RLELVGERNGAPIFVD-YAHKPDALAKALQALR---P 366

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           + + + I V G     G    +    L   ++      V ++  +  +   A  R+  + 
Sbjct: 367 YAKRQLIVVFG----AGGDRDAGKRPLMGAIAAQQADRVIVTDDNPRSENAAAIRAAILA 422

Query: 426 YSETMDGL------FLFIQSSLVDGDVVVV--KS 451
            +   D +           ++L  GD +++  K 
Sbjct: 423 AAMGADEIGDRAEAIRAAIAALQPGDALLIAGKG 456


>gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
 gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
          Length = 520

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/505 (17%), Positives = 171/505 (33%), Gaps = 71/505 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHD---- 55
           + P+ +   L ++++   +  V         +DSR +   + F  +K  +  D  D    
Sbjct: 4   LQPMMSALSLPESVR-QLLNPVMNQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDLEKV 62

Query: 56  --FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT---- 109
             ++     K A  V+   D+ A      +P+  +  +   L  L   +  +   T    
Sbjct: 63  AGYLAQVSDK-AAFVLSEIDVSAIQSQFMLPIIYLPTIRDFLGSLIQTSLQQQHPTQLPA 121

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------- 158
           +IA+TG+ GKTT  +++   +S      A +G+  N +   LT +               
Sbjct: 122 VIAVTGTNGKTTVSQLVAQLISQSGIKTAVMGTAGNGVLPNLTPSTHTTLEVFNLQHAID 181

Query: 159 -----DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 V     E     L + R     V  ++A+ T ++  HL   + +++ A AKA +
Sbjct: 182 DFAKQGVQALAIEASSHGLHQQRL--QGVPINVAMFTNLSRDHLDYHTDMDDYAQAKARL 239

Query: 214 FE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQS 270
           F+           +N DD F EL+   ++A  + T++++  + + ADF  +      +  
Sbjct: 240 FDKAHFPTLTHAIINLDDEFSELMIEAANASHL-TVWTYSLTNDQADFFAKTILPSLQGG 298

Query: 271 WMEVQL-----QGKSMEVVHHGIGYHMAQNMLMTLGIVSIL------TADVDTAIKALSV 319
            + + L         + V    +G     N+L ++     L         V     A+  
Sbjct: 299 DLTIALSKAVTPQGELTVNSPLLGRFNVANLLASIAGAFALSQSAAMGLSVAQIQAAVPT 358

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR  R          +     Y   P +++  ++ L     H  G   AV G   
Sbjct: 359 LRGATGRMDRVPST-----SSCFIVDYAHTPDALEQVLTSLKS---HCTGELWAVFGCGG 410

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS--IHVHYS----E 428
           +  +  +         L+      V L+          A+ + +        HY      
Sbjct: 411 DRDKGKRPLMAQAGLRLA----DKVILTADNPRSEDPNAILNDMQAGMTCQQHYQAIIEP 466

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D+VV+  K 
Sbjct: 467 DRQKAIEYAVQHAKPSDIVVIAGKG 491


>gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
 gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
          Length = 487

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 47/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  DLL       + +        + +DSR + P + F A+ G   DG DFI  A+  
Sbjct: 1   MSSLDDLL----APWMALDTGVEFQQLVLDSRRVRPGDCFVAVAGHQVDGRDFIDSAIAL 56

Query: 64  GAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTT 121
           GA  V+ + D        + + V GV ++   L+ LA  A    ++ T+I +TG+ GKTT
Sbjct: 57  GAVAVLADADADGRQADRNGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR-----MPVDVDFGIF 165
             ++    L+++      +G+  N +              +T+AR          +    
Sbjct: 117 VTQLCAQLLTALGHQAGVMGTVGNGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVAL 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R     V+  + V T ++  HL     +   A AK ++F  L        
Sbjct: 177 EISSHGLSQSRVAALPVQ--VGVYTNLSRDHLDYHGDMAAYADAKRQLFA-LPGLRHGVF 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           N DD        +     +   YS    +   A   +   +   +     V        +
Sbjct: 234 NLDDETGSRWHRELSGSLLALGYSIQGARCDGAYLTVEGVEYHDQGVRARVVSSFGQGTL 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  LG +  L   +   +  +   H   G   R  C       TL+ 
Sbjct: 294 NSPLLGAFNLANLLAALGALLSLGYSLSDLLSVVPQLHSAAG---RMECFGTDSTPTLVV 350

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P ++  A++ L    PH  G    V G   E     +          +     H
Sbjct: 351 D-YAHTPDALSQALAALR---PHCRGALWCVFGCGGERDSGKRPLMAQ----AAEQGADH 402

Query: 404 VWLSG--FHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++       A  D   +     +      E          +    GD+V++  K 
Sbjct: 403 LIITADNPRSEAFADIAAQMEAGLTGQAEVIEDRAAAVRRAFAQAQPGDMVLLAGKG 459


>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
 gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
          Length = 534

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 149/408 (36%), Gaps = 49/408 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85
           V G+S +S++I P   F  + G   DG +F   A++KGA   +V+  ++AS  +     V
Sbjct: 41  VTGLSTNSQAIEPGMVFIGMPGTRVDGGEFWQSAIEKGAIAALVSPSVLASKPNTSDALV 100

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               ++     +LA    A+      I+ +TG+ GKTTT  ++   L+  ++  A +G+ 
Sbjct: 101 LTTSNIAKVCAELAASFYAQPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTL 160

Query: 144 NNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                    +A                    +    + E+    L + R  T  +   +A
Sbjct: 161 YTRWPGYEKIAVHTTPFSIDLQAELASAHQAECQTVVMEVSSHALAQHR--TWSIPFEVA 218

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +++   AKA +F      G   +N  D + + L  +   +G    
Sbjct: 219 VFTNLTQDHLDYHKDLDDYFEAKALLFSPDYLKGHAIVNQKDPYGQKLIER---IGKHKT 275

Query: 248 YSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++    ++AD      +         +     +       +G    +N+L  +G    L
Sbjct: 276 LTYDITDRSADLYTSDLRYSPIGVSGTIHTPAGNASFSSPLVGQFNLENLLAAVGAALHL 335

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID------------------ESYNA 348
              +D  + AL  F    GR +R + +       +++                    Y  
Sbjct: 336 GVSLDQIVVALPEFKGVPGRMERVQISTGMAAQAVVELDTVAEPDTVAEQDISVIVDYAH 395

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            P S++ A+       P  EGR I V G     G+  +S    +  + 
Sbjct: 396 TPDSLENALKA---ARPFIEGRLICVFGC---GGDRDRSKRPKMGRIA 437


>gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 498

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 154/428 (35%), Gaps = 45/428 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDK 72

Query: 78  IGSLS-------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            G          I  F + + +  L           +  II ITG+ GKTT  +++    
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRF-YKEPGKRLKIIGITGTNGKTTVTQLINQWS 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------IFE-------LGMSHLGEIR 176
           + +    A +G+  N     L                   + E       + +S  G I+
Sbjct: 132 TILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQ 191

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V  +IA+ T +   HL     +E+  SAK  +F    K   I LN DD + ++  
Sbjct: 192 HRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS-THKVKKIILNADDQYGKIWL 250

Query: 237 AK-------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288
            K       +  +  +    +             +Q +  S ++  +    +  +    I
Sbjct: 251 KKLLNFYTVAVTIQNRKQKKYSTKW---INATNIEQNNNNSIYITFESSWGTGRISSCLI 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L++L  +  L   +   I       P +G   R          T I + Y  
Sbjct: 308 GRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQG---RMELFSYVKKPTFIID-YAH 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  ++ +     H +     + G   E  +  +     +AE +S      V ++ 
Sbjct: 364 TPDALKKTLNAIHS---HYQRYIWCIFGCGGERDQKKRPIMGAIAEKMS----DKVIITN 416

Query: 409 FHVLALKD 416
            +    K+
Sbjct: 417 DNPRNEKE 424


>gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum rubarum]
          Length = 509

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 163/474 (34%), Gaps = 58/474 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P+  ++ +S DSR +     F    G  +   +F+  A+ +GA  +V +      I 
Sbjct: 23  GRFPEKVLS-LSDDSRQVENGALFLIRPGEGF-RWEFVDEALDRGASYLVADRKAFPEID 80

Query: 80  SLSIP---------VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTI 128
           S             +  V+++  A+ +LA        S   +I +TG+ GKTT+  +   
Sbjct: 81  SRPALSSRIRESAGLSLVENLPRAVGQLASSWWGFPSSFLKVIGVTGTNGKTTSSFLTRS 140

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHL 172
              +       IG+    +G   T A                 +   +     E+    L
Sbjct: 141 VCRAGGLPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHAL 200

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---TIFLNYDD 229
            + R         +   T +   HL     +E    AK ++       G      ++  D
Sbjct: 201 DQDRL--AGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGD 258

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +   L  +    G + + ++G+  +A  +  +           ++     M +     G
Sbjct: 259 EYGARLAKELERDG-RRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSG 317

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           ++  QN+L  +G    L   ++   + +       GR +R       GF  ++D  Y   
Sbjct: 318 HYNLQNILGAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPT--GFSVIVD--YAHT 373

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             ++    ++LS + P   G+ I V G     G+  +     +  V    +   V  S  
Sbjct: 374 DDALS---NLLSAVRPVTRGKVITVFGC---GGDRDRGKRPRMGSVAGRLSDFVVLTSDN 427

Query: 409 ---FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +  ++ D +   +       V  S+    +F  I+ +   GD VV+  K 
Sbjct: 428 PRTENPESILDEIEPGLRETGTPYVRVSDRKSAIFEAIRRA-RPGDAVVIAGKG 480


>gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila
           L48]
 gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48]
          Length = 482

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +  A   V+V +  +              IPV    ++L  L +          
Sbjct: 65  FVGHRAENAASADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------- 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  +L    ++              IG  LT A     +    + +
Sbjct: 117 -HGVAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGTSRYLI 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P +AV+T I   H++ +     ++     E    L   G   + 
Sbjct: 170 AEADESDASFL--HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     +  +      +   ++G S+ AD +    +Q   Q+   V  +  + +EV  
Sbjct: 228 LDDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLEVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I +      +  ++ LS F     R + Y     +G   ++ + 
Sbjct: 284 NMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPVEGGSVMLVDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I     +      RR+ ++         ++  + D  +VL   N+    
Sbjct: 344 YGHHPTEVAAVIKA---VRGGWPSRRLVIVYQ-PHRYSRTRDLYDDFVQVLGDANVLLLM 399

Query: 403 HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + +  
Sbjct: 400 EVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILICQGAGD 459

Query: 455 CG 456
            G
Sbjct: 460 VG 461


>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 734

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 162/451 (35%), Gaps = 24/451 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L + +    +       +   +   + I P  A+FA            + A +K
Sbjct: 293 ITTVGKLCEILNAE-LRNAADVPITSFAFGKQKIKPGCAYFAADKET------AVAAFEK 345

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +++    +        IP   V ++  AL++ AV  +       +A+  S  K    
Sbjct: 346 GASVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKINPL 399

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   LSS  +T   I   NN+  +   +       +  +  +   + G +  ++    
Sbjct: 400 SMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTEAAVINVSCVNGGNVERVSQTAN 459

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A++T+   +         E+   K ++  G+ ++G + +N DD     +        
Sbjct: 460 FDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQD-- 517

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I + G     AD+     +    +   ++     +  +  +    H     L T  +
Sbjct: 518 ---IITIGVDNRMADYYADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATFAL 574

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+       I A+  + P  G         N+    +I +  N    S+ AA+  L  
Sbjct: 575 GEIMGIPPKQIIPAIEKYRPSTG----LTTVRNERGIYVISDFENEAVESVGAALKELCT 630

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRS 421
           +    + RRIAVL ++ +  E     +  +  +++  ++      G     L K A  +S
Sbjct: 631 MQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADLKS 690

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             V    T   L  F++ +L D D V+ K S
Sbjct: 691 KFVIKLNTRQALTEFLKLNLRDNDAVLFKGS 721


>gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii SL3/3]
          Length = 492

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 167/476 (35%), Gaps = 45/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++ +    +       +  I  DSR  AP   F  I G   D H F      KG
Sbjct: 1   MKLEQLMEGVPFTLVQGSLDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
              +V+  D+  S     + V  V+    A+  ++         + T+I +TG+ GKTTT
Sbjct: 61  VSALVIQHDIDLSALP-GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L +  +    IG+   +                      R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      V   + V T ++P H+        EE  S K ++F   ++     +N
Sbjct: 180 VSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF---KRCDVGVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEV 283
            DD     L           + ++G+ + AD++   +K      ++ V   + GK  M+V
Sbjct: 237 IDDENTAALLEGHTC----KLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDV 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  L +  +L                   +G+     +++ F  L+D
Sbjct: 293 KVNMPGEFSVYNALAALAVGKVLGLPDAAIHDG---LGKCVVKGRVELVPISKKFTILLD 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
             Y  N  S ++ ++ L    PH   R + V G      +L +    ++   ++ ++I  
Sbjct: 350 --YAHNEVSTESLLTTLRAYKPH---RLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404

Query: 402 ---SHVWLSGFHVLALKDALPRSI-HVHYSETMD--GLFLFIQSSLVDGDVVVVKS 451
              +        +  +++ + +      + E  D      +      +GD++ V  
Sbjct: 405 EDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIG 460


>gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
 gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
          Length = 489

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 150/461 (32%), Gaps = 49/461 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V  + +DSR I   +AF AIKG   DG  F+  A+  GA + +V+     +  S  
Sbjct: 17  ESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAIALVDEQCECTFASDK 76

Query: 83  IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           I    V  +   L +L+     +   +  +I +TG+ GK+T   M+           A I
Sbjct: 77  I--IRVAQLDKKLAQLSAQFYGKPSEELALIGVTGTNGKSTITSMIAYLAQVCGSKSAVI 134

Query: 141 GSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+        L               +          +  + +S  G ++      R   
Sbjct: 135 GTLGWGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAMEVSSHGLVQGRVACTRFKA 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV + ++  HL     ++  A AK  +F          +N DD   +L   +   +    
Sbjct: 195 AVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPE-ISVINQDDEVAKLWLMQPELMDA-- 251

Query: 247 IYSFGKSKNADFQLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +G+ K      R       +   +    +      + E+     G     N+     
Sbjct: 252 -VVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKCPLYGQFNLYNLAAAFA 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L   +D   +A+S   P  GR + +    ++         Y   P ++  A+    
Sbjct: 311 TLLALGYSIDLLAQAVSKLSPVAGRMQPF----SEANKPTCVVDYAHTPDALALAL---Q 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VL 412
            +  H  G+   V G      +  ++     AE  +    + + ++  +         + 
Sbjct: 364 ALQLHVPGKVTCVFGCGGNRDKGKRALMAQAAERFA----NKIIVTSDNPRNEDPKAIIA 419

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +      + HV   E  +             +V+++  K 
Sbjct: 420 DILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKG 460


>gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
 gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
          Length = 505

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 166/447 (37%), Gaps = 41/447 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +   + F AI         +I  A+ +GA  V+V+      +  L   VF + ++ 
Sbjct: 41  DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAAEGV-ELDKQVFAIANLH 99

Query: 93  GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN------ 144
             + ++A A      +  ++I ITG+ GKT+T  +LT A   +  T A IG+        
Sbjct: 100 EVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTLGAGITGE 159

Query: 145 NHIGVPLTLARMPVDVDFG-----------IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             I + +T  ++     F              E+    L +       V  +I   T   
Sbjct: 160 RRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQ--RRVDGVAFNIVAFTNFT 217

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGK 252
             HL     +EE A+ KA+IF  L    T  LN DD+  E     +   G++ I  +   
Sbjct: 218 RDHLDYHGTMEEYAAQKAKIFT-LPGVTTALLNLDDAAAENHFHNTLPEGMRGIGMTSRG 276

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              A  +    +  +E    ++ ++G+S  VV   IG     N+L    ++     +   
Sbjct: 277 HSEASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQGIEPQA 336

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             +AL+   P  GR  R R         L+       P +++ A++ L +    G  R +
Sbjct: 337 IAEALAPLEPVLGRMTRIR---ENDKLPLVVVDAGHTPDAVRQAVTALRE---SGHTRIV 390

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-------SGFHVLA-LKDALPRSIHV 424
            V G     G+       ++A ++   +   V          G  ++A ++        V
Sbjct: 391 TVFGA---TGDRDPGKRPEMARIVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEHPERV 447

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                      +   +    DVV+++ 
Sbjct: 448 IEIRDRASAIAYAIDAANPDDVVLLQG 474


>gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
 gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
          Length = 484

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 146/395 (36%), Gaps = 29/395 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V GIS DSR + P   FFA+ G   DG  +   A ++GA  VV       S+  L +
Sbjct: 19  DLEVTGISSDSRQVKPGVVFFALAGTKADGAAYAADAARRGALAVVAGK--SNSVAGLPV 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  VDD   AL   A     +   T++A+TG+ GKT+                A IG+ 
Sbjct: 77  PVLTVDDPRLALALSAARYFGKQPRTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTT 136

Query: 144 NN-----------HIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L ++        V +   E     L + R     V+    
Sbjct: 137 GVVAPGRNEYGSLTTPDPVALHQLLRELADAGVTYASMEASSHGLDQRRL--DGVKLAAG 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     +E+   AK  +F+ L   G    +  DD +       + A G+  
Sbjct: 195 GFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAAQAAGL-N 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  +    L++ +    +   EV+ +G   E+     G     N L++ G+    
Sbjct: 254 VLTVGRHGDF-LTLKRVEHERHRQRAEVEAEGVLYEIDLPLAGDFQISNALVSAGLAIST 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V  A+ AL       GR       ++     +    Y   P +++   +VL+ + P 
Sbjct: 313 GTPVAKALAALEKLKGAPGRLDLVGTTVSGAPVYV---DYAHKPDALE---NVLASVRPF 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             GR + V G   +     +    ++A  L+   I
Sbjct: 367 TTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVI 401


>gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
 gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
          Length = 486

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 94  QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 145 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 197 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G +++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 253 YGFAEDADVRIENYRQQGQQGKFTVVRKGKANLDITLNIPGRHNALNASAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 313 SDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 372 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYSAGEKPIAGADGRSLCRTIR 428

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 429 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 473


>gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
 gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
          Length = 518

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 154/471 (32%), Gaps = 56/471 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVAS 77
           +  +  + GI+ +S+       F  I+G   DGHD+I  A   GA  +++          
Sbjct: 20  LEEEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYIEEACNLGASCILIEKLVSGGRML 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               ++ V  V D   AL  ++         K  +I +TG+ GK+T   M+   L S+ +
Sbjct: 80  KFPENVAVVLVKDTREALAGISRIWFGSPADKLKVIGVTGTKGKSTVAVMIREMLESLGQ 139

Query: 136 TYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLT 179
               IG+  +H+G  +  ++                +     + + E+    + + R   
Sbjct: 140 KCGLIGTIAHHLGNEVVTSQNTTPDAFTIQSYFAKMVEAGCHYAVMEVSSQGIKQHRI-- 197

Query: 180 HLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             +   IAV T     H+     + + E    K+ +FE          N DD+    +  
Sbjct: 198 DGIWFEIAVFTNFGEDHIGPGEHASLGEYRYYKSCLFEQCR---IGIGNLDDAQCSYMFQ 254

Query: 238 KSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +             + +   F+        K     E   ++        +      G  
Sbjct: 255 RKCCTKYGFTCREEEGQERGFRNSHVLTAEKISFLMEGGELKTVFYADDRKYELALPGKF 314

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  L  VS L  + + A   L       GR +R     + G   L    Y  N  
Sbjct: 315 NVYNALAALQTVSCLGFEREEAGDVLKHL-VVRGRMERV----DAGENILCYIDYAHNAM 369

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+   + +L    P    R + V G     G  + S    +  V        +  S    
Sbjct: 370 SLAKVLKMLRIYEPE---RILLVFGC---GGNRAGSRRSGMGRVAGELANLTIITSDNPR 423

Query: 409 -----FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  +++ +  +   +   +  +   LF       GD++++  K 
Sbjct: 424 WEEPAKIMADVEEGIKETSGAYRMIQDREEAVLFAVEMARQGDILLIAGKG 474


>gi|121998869|ref|YP_001003656.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
 gi|189028995|sp|A1WYU2|MURC_HALHL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121590274|gb|ABM62854.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
          Length = 486

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 141/405 (34%), Gaps = 42/405 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV    ++L  L +             +A+ G+ GKTTT  +L
Sbjct: 93  AVTEDNPEVQAARQQRIPVVPRAEMLAELMRFR---------HGVAVAGTHGKTTTTSLL 143

Query: 127 TIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L+   +  T+         +      AR+     + + E   S    +      ++P
Sbjct: 144 ASCLAEGELDPTFV----IGGRLISAGAHARLGAG-PYLVAEADESDASFLH-----LKP 193

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +A +T +   HL  +    E +     E    L   G   L  DD     L+ +     
Sbjct: 194 MMAAVTNVDADHLGTYGGDFEALRRTFIEFLHHLPFYGLAVLCIDDPEVRRLRGEI---- 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + + ++G S++AD ++   +    ++   ++   G +  V     G H   N    + +
Sbjct: 250 GRPVLTYGFSEDADVRVSGMEADGHRTRFRIEEGDGAAFAVELSLPGRHNVLNAAAAIAL 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  DV    +ALS F     R + Y           + + Y  +P  ++A +     
Sbjct: 310 ARELGVDVAAIQRALSSFQGIGRRFQVYPDIPLAEGAAALVDDYAHHPRELEATLQAARA 369

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLA 413
             P    R + V          ++    D A VLS         +Y      L G    A
Sbjct: 370 AWPE--RRLVVVF--QPHRYSRTRELFDDFARVLSGTDALVLTEVYAAGEARLPGADGRA 425

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           L  A+         ++E++D +   +   L D DVV+   + S G
Sbjct: 426 LASAVRDRGGAQPIFAESLDEVPGLLAGLLRDDDVVLTLGAGSIG 470


>gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 552

 Score =  176 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 149/482 (30%), Gaps = 76/482 (15%)

Query: 5   WTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               +L +A    +            V+ ++ DSR       F A+ G   DGHD+I  A
Sbjct: 1   MQLAELFRAAELPLPAKISRAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYIADA 60

Query: 61  VQKGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIA 112
           V +G  L++              +   ++      D   AL  L  A          +I 
Sbjct: 61  VARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLLLIG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARM- 156
           ITG+ GKTT   +L   ++S       IG+ N                       LA M 
Sbjct: 121 ITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMR 180

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE- 215
              V   + E+    L  ++     V   +A+ T ++  HL     +E   +AK  +FE 
Sbjct: 181 QAGVTHVVMEVSSHAL--VQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQ 238

Query: 216 GLEKTGTIFLNYD------------------------DSFFE-----LLKAKSHALGIKT 246
            L+      +                           D  +       L  ++ A     
Sbjct: 239 HLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAPR 298

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++  G +   + +L   +         +       E+    +G     N+L        L
Sbjct: 299 LWRCGFASG-ELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    AL+V  P  GR +R+     +G    +D  Y   PA+++  +  L      
Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF--VDRRGMKVFVD--YAHTPAALEQVLRTLR----P 409

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI 422
              R I + G     G+  +     + E+        V  S         A+  A+   +
Sbjct: 410 HSRRLIVIFGC---GGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGV 466

Query: 423 HV 424
             
Sbjct: 467 KG 468


>gi|308271441|emb|CBX28049.1| UDP-N-acetylmuramate--L-alanine ligase [uncultured Desulfobacterium
           sp.]
          Length = 459

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 149/410 (36%), Gaps = 45/410 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +   +S+PV    ++L  L +L            IA+ G+ GKTTT  ++   L+ 
Sbjct: 79  PEVVAAAQVSVPVIPRAEMLAELMRLKY---------SIAVAGAHGKTTTTSIVASVLAK 129

Query: 133 IK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                   IG     I     L +      + + E   S    +++      P IAV+T 
Sbjct: 130 GGLDPTVVIGGKLKSIDSNALLGQGN----YIVAEADESDGSFLKY-----SPAIAVVTN 180

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL  +S I+ I        + +   G   L  D+ + + +  K      K   ++G
Sbjct: 181 IDKEHLDFYSNIDAIKDVFLNFIDRIPFYGLAVLCLDNEYVQDIIPKIK----KRFTTYG 236

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S  A FQ +        S  +V   G ++ E+  +  G H   N L ++ +   L    
Sbjct: 237 MSSQAVFQAKNVSIEGLISKFKVCYNGNTLGEISLNLPGIHNVYNSLASIAVGMELDIPF 296

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +A       +G  +R          T++D+ Y  +P  ++   + L         R
Sbjct: 297 DIIKEA---LENMQGVQRRLEIKGEVRGITVVDD-YGHHPTEIR---TTLQAAKDCWPDR 349

Query: 371 RIAVLGDMCEM-------GELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           R+ V+              + +++F+  D   +L +Y      + G     L + +    
Sbjct: 350 RVIVVFQPHRYSRTKALFDDFTRAFYQSDHLIILPIYPAGEKEIEGIDSKFLCEEIAAHG 409

Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS---CGFYRLINLLLEE 467
           H    Y   M+    +++  L   D+++   +      G   +I+ L EE
Sbjct: 410 HKEAVYMNDMESAVEYLKDKLNKNDILLTLGAGDVWKVGM-AVIDSLEEE 458


>gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
 gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
          Length = 519

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 168/482 (34%), Gaps = 55/482 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+Q     + P      +  D+RS+A  +AFFA      D   FI  A+++GA  
Sbjct: 12  QQIADALQWLRARVQPGA---HLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAA 68

Query: 68  VVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+V  +        S  + V  ++++ G++               + +TG+ GKT+  + 
Sbjct: 69  VLVQPEGFGGAIDASTMLAVPALNELAGSIASAW-YGDPSDSMLTVGVTGTNGKTSCSQW 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           ++ AL+++    A IG+    +   L               +LA++       +  E+  
Sbjct: 128 ISAALTALGTRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     IAV T +   HL      E   +AKA +F    +     +N DD
Sbjct: 188 HALHQGR--VNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFAW-PELRAAVINRDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEVQL- 276
           +    L A +   G     ++G               +A       +  +  +   +   
Sbjct: 245 AAGRRLLASTR--GHARTIAYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTS 302

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                +V    +G     N+L  LG +       D A+  L+      GR +R      Q
Sbjct: 303 DWGDADVEVQTLGAFNVSNLLGVLGALLAADVPFDAALAELARLESVNGRMQRL-GGRLQ 361

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+   Y   P +++  +  L  ++    G  + + G   +     +     +AE L
Sbjct: 362 NDEPLVVIDYAHTPDALEKTLEALRPMAAARGGELVCMFGCGGDRDATKRPLMGAIAEKL 421

Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDV 446
           +      V ++  +  +         +   +  +      E     +   I+ +  +  +
Sbjct: 422 A----DGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRGAAREDVI 477

Query: 447 VV 448
           V+
Sbjct: 478 VL 479


>gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
 gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
          Length = 495

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 44/455 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82
           ++ + +DSR I   E F AI+G   DG  FI  A+ +GA +V+   D     G +     
Sbjct: 27  ISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHVHGQVEFREG 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV  + ++   L++LA       +  +I  TG+ GKTT  +++   L  +    A +G+
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGATGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 143 YNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N     L                 R   +       L  S  G ++     +     V
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI 247
            + ++  HL     ++  A AK  +F          +N DD+      K   HA+GI  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSE-HACQRAIINVDDAVGAQWVKQLPHAIGISLL 265

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +       R+ +       ++        E+    IG   A N+L+ L  +  L 
Sbjct: 266 AQ--PNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPQLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+  A+ G   +     +     +AE  +      V L+  +  +      + D L   
Sbjct: 377 AGQLWAIFGCGGDRDRGKRPMMAAIAEQYA----DRVILTDDNPRSESPQAIVADMLAGL 432

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            H    H          +   +    D++++  K 
Sbjct: 433 THPELAHIEHNRFQAASYALQNAGAQDIILLAGKG 467


>gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 495

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 153/422 (36%), Gaps = 39/422 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  +LL       I  +P +  + GIS++S +    + F AI+G   DG D+I  A+ K
Sbjct: 1   MTLRELL----APWIKQIPFECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAK 56

Query: 64  GAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           G   ++         G +     +P+   + +   L+ +A     +      +I ITG+ 
Sbjct: 57  GVAAILAEAKGQTKHGEIHKLHDVPIIYFNQLNKMLSAIAGHFYQQPSRFLRLIGITGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVD 161
           GKTT   +L   LS + +T A +G+  N I   L  +                     V 
Sbjct: 117 GKTTISYLLANWLSLLGETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVK 176

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F I E+    L + R     +    AV + ++  HL     + +   AK ++F  L  + 
Sbjct: 177 FSIIEVSSHGLVQDR--VSNLNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSELNVSK 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGK 279
              +N DD+  +            T  +        +    RK    +    +       
Sbjct: 235 R-IINVDDTVGKNWLVHLPQAVAVTANNSIPHNWPGYWLCARKIIHHTSGVNINFNSYWG 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S E+  + IG     N+L++L  + +L   +   +K         G   R       G+ 
Sbjct: 294 SGEIYSNLIGEFNVSNILLSLATLLVLGYSLKNLVKTSRKLQAICG---RMEVFSAHGWP 350

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +I + Y   P ++  A   L  +    +G+   + G      +  +     +AE  + Y
Sbjct: 351 VVIVD-YAHTPDALAKA---LLAVKMRCQGKIWCIFGCGGNRDKSKRPIMGAIAEEYADY 406

Query: 400 NI 401
            I
Sbjct: 407 II 408


>gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1]
 gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1]
          Length = 482

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 154/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +  A   V+V +  +              IPV    ++L  L +          
Sbjct: 65  FVGHRAENAATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------- 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  +L    ++              IG  LT A     +    + +
Sbjct: 117 -HGVAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGTSRYLI 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P +AV+T I   H++ +     ++     E    L   G   + 
Sbjct: 170 AEADESDASFL--HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     +  +      +   ++G S+ AD +    +Q   Q+   V  +  + +EV  
Sbjct: 228 LDDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLEVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I +      +  I+ LS F     R + Y     +G   ++ + 
Sbjct: 284 NMPGNHNVLNALATIAIATDEGITDEAIIQGLSGFQGVGRRFQVYGELPVEGGSVMLVDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I     +      RR+ ++         ++  + D  +VL   N+    
Sbjct: 344 YGHHPTEVAAVIKA---VRGGWPSRRLVIVYQ-PHRYSRTRDLYDDFVQVLGDANVLLLM 399

Query: 403 HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + +  
Sbjct: 400 EVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILICQGAGD 459

Query: 455 CG 456
            G
Sbjct: 460 VG 461


>gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
 gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
          Length = 477

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 100/457 (21%), Positives = 177/457 (38%), Gaps = 60/457 (13%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           A+    + GH     A  +GA  VV +T +      +       IPV     +L  L +L
Sbjct: 48  ALGVATHVGH---AAAHIQGADAVVTSTAVQQDNPEVLAARERKIPVVPRAVMLAELMRL 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARM 156
                       IAI G+ GKTTT  ++   L+      T+   G  N+      T A++
Sbjct: 105 RKG---------IAIAGAHGKTTTTSLVASVLAEAGLDPTFVIGGRLNS----AGTNAKL 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
               ++ + E   S    +  L     P +AV+T I   H+  +      +  A  +   
Sbjct: 152 GQG-EYIVVEADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLH 205

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT  L  D+     +           + S+G S+ A+ +    +    Q    VQ
Sbjct: 206 RMPFYGTAILCVDNPAIRDILPSVTC----PVTSYGLSEGAEVRALDVRAVGTQMHFSVQ 261

Query: 276 LQGK----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY- 330
            +       ++VV +  G H   N L  + + + L    +  ++AL+ F     R +R+ 
Sbjct: 262 RRNGVTLPDLDVVLNLAGEHNVLNALAAIAVATELNVPDEAVLRALAGFTGVGRRFQRHG 321

Query: 331 -RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A + G FTLI++ Y  +P  M A +   +       GRR  VL         ++   
Sbjct: 322 DLPAQDGGRFTLIED-YGHHPVEMAATM---AAARGAYPGRR-LVLAFQPHRYSRTRDCF 376

Query: 390 IDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQ 438
            D  +VL   +    + V+ +G   +   D   L R++ V       + + +  +   I 
Sbjct: 377 EDFVKVLGTADAVLLTEVYAAGEAPIVAADGRSLARALRVAGAVEPVFIDDVADMPQRIA 436

Query: 439 SSLVDGDVVVVKSSNSCGF--YRLINLLLE-EFPAIQ 472
           +S  DGDVV+   + S G    +++ +L + E PA +
Sbjct: 437 ASAKDGDVVLCMGAGSIGGVPAKIVEMLQKNELPAQE 473


>gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 510

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 164/485 (33%), Gaps = 52/485 (10%)

Query: 6   TFHDLLQ--AIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T   LL    IQ     G +    V G+  DSR + P + F  + G   DG  F+  A+ 
Sbjct: 7   TLSKLLHQAGIQPQLAQGSLEGVQVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALA 66

Query: 63  KGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAIT 114
            GA   +++ +   S+      GS  + V     +  A+ ++A         + T++ +T
Sbjct: 67  AGAVAALISQEAWESVSGEAGWGSQPVLVLPRASLNRAVAQVAAAFYGFPARQLTLVGVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------V 158
           G+ GKTTT  ++   + +  ++ A +G+  N       +A                    
Sbjct: 127 GTNGKTTTTHLIEHLVQAAGRSAALLGTLYNRWPGYSEVASHTTLFPPELQRSLREAQRA 186

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  + E+    L + R          AV T +   HL     +E    AKA +F    
Sbjct: 187 GAEVAVMEVSSHALAQDR--VWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFRQEY 244

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQ 277
             G   +N DD+    L            YS    +          +         +   
Sbjct: 245 LQGRAVINADDAGGRRLLQAIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQATLHTP 304

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +  V    +G     N+L  +G+   L   V+    AL  F    GR +R      Q 
Sbjct: 305 SGAFAVAAPLVGSFNLANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERVTL-PGQD 363

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D  Y   P  ++  +  L       +G+ I V G     G+  +     +  + +
Sbjct: 364 IAVIVD--YAHTPDGLENLLKALRS---QVQGQLICVFGC---GGDRDRGKRPQMGRIAA 415

Query: 398 LYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +    V ++  +            +   +P S      +    + L I ++   GD VV
Sbjct: 416 TW-ADQVIVTSDNPRTEDPQQILRDILAGIPGSPRAVEVDRRQAIRLAILAA-QPGDTVV 473

Query: 449 V--KS 451
           +  K 
Sbjct: 474 IAGKG 478


>gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae]
          Length = 515

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 142/411 (34%), Gaps = 49/411 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 110 AIAADNPEIIAAREARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMI 160

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +            N  +     +        + I E   S    +      ++P +
Sbjct: 161 ASIYAQAGLD---PTFINGGLVKAAGVHARLGTSRYLIAEADESDASFLH-----LQPLV 212

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AVIT I   H+  +    E++          L   G + L  DD     L  +      +
Sbjct: 213 AVITNIEADHMETYDGDFEKLKQTFISFLHNLPFYGRVVLCIDDPVVRSLLPQI----GR 268

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD ++  +KQ   Q +  V  + +  +  + +  G H A N    + + +
Sbjct: 269 YITTYGFSDDADVRITSYKQRGNQGFFTVARENRADLAFILNAPGRHNALNATAAIAVAT 328

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALN--------QGFFTLIDESYNANPASMKAA 356
               D    + AL  F    G G+R+    N        +    ++ + Y  +P  + A 
Sbjct: 329 EEGIDDSAILTALKKFQ---GTGRRFDLLGNFPLADVNGKKGSVMLVDDYGHHPTEVDAT 385

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLS 407
           I    +  P+   R + V          ++  + D A +         L +Y      + 
Sbjct: 386 IKAAKEGWPNK--RIVMVF--QPHRYTRTRDLYDDFANILEQVDVLLMLDVYPAGEEPIP 441

Query: 408 GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           G    +L   +     +   +    D +   +   + D D+++++ + + G
Sbjct: 442 GADSRSLCRTIRNRGKLDPIFIAEHDQIGETLAKIIEDNDLILIQGAGNIG 492


>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya zeae Ech1591]
 gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
          Length = 494

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 168/473 (35%), Gaps = 44/473 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ +    +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV 
Sbjct: 6   LRDVLAPWVKDAPERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             D     G+L+    +PV  +DD+   L+ L      +  S   ++ +TG+ GKTTT +
Sbjct: 66  QADEATPDGTLTEMHGVPVIYLDDLNLRLSALAGRFYRQPSSSLQLVGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           +L     ++ KT A +G+  N +   +  +         + +              + +S
Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    AV T ++  HL     +    +AK  +F    + G   +N DD 
Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE-HQVGQKIINADDE 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                 ++       ++     S  A   +  +         +          +    +G
Sbjct: 245 VGRRWLSRLPDAVAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAINSRLMG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L+ L  +  L   ++  ++A S   P  G   R    L  G  T++ + Y   
Sbjct: 305 EFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCG---RMEVFLADGRPTVVVD-YAHT 360

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++ A   L+    H  G    V G   +     +     +AE L+      V ++  
Sbjct: 361 PDALEKA---LAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLA----DRVIVTDD 413

Query: 410 HVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +   L  +  V                    DVV+V  K 
Sbjct: 414 NPRSEDPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKG 466


>gi|326795769|ref|YP_004313589.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
 gi|326546533|gb|ADZ91753.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
          Length = 476

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 149/431 (34%), Gaps = 46/431 (10%)

Query: 41  EAFFAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
             +   K  + +D H  ++         +      +       IP+    ++L  L +  
Sbjct: 64  CVYIGHKEENVFDAHVIVVS------TAINEENPEIKWAKEHRIPIVRRAEMLAELMRYR 117

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      IA+ G+ GKTTT  +++  L       A   +    IG  LT A     
Sbjct: 118 ---------HGIAVAGTHGKTTTTSLMSSIL------TATGDAPTFVIGGKLTSAGTNAQ 162

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLE 218
           +    + +  +   +  FL   ++P   ++T I   H+       E++     E    L 
Sbjct: 163 LGSSKYLVAEADESDASFL--HLQPQTVIVTNIDEDHMDTYQGDFEQVKRTFIEFIHNLP 220

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277
             G   L  DD     +  +      + + ++G  + ADF     KQ          L  
Sbjct: 221 FYGLAVLCIDDENVRSIMPELS----RPVLTYGIEEQADFYATDIKQSGRYCEFMAHLPE 276

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQ 336
           G+ + +     G H   N L T+ + + L    +     L  F     R +      L+ 
Sbjct: 277 GEPIRIRLPMPGKHNVLNALATIAVATDLGVAPNVIQAGLMGFEGVGRRFQELEPLVLSD 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   +  + Y  +P+ + A I+ +    P    R + V          ++  + D   VL
Sbjct: 337 GGKAMFVDDYGHHPSEVLATINAIRDGWPEK--RLVMVY--QPHRYTRTRDLYEDFVRVL 392

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           S  ++     V+ +G  ++   D  +L  SI +       +      L   + + L D D
Sbjct: 393 SKVDVLILLDVYSAGEAIINGADSKSLCGSIRMRGTVDPIHVRDDGELQSILSNVLRDDD 452

Query: 446 VVVVKSSNSCG 456
           +++ + + + G
Sbjct: 453 LLITQGAGNIG 463


>gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 497

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 150/411 (36%), Gaps = 38/411 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I   PQ   + +S+DSR +  ++ F AIKG   DG+DFI  AV+K    ++  T     
Sbjct: 13  WIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKK 72

Query: 78  IGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
            G +    +IP+     +   ++ LA            II +TG+ GKTT  +++     
Sbjct: 73  HGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSE 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRF 177
            + K  A +G+  N     L   +        I                + +S  G ++ 
Sbjct: 133 LLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSHGLVQN 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +  +I + T +   HL     +++  SAK   F    K   I LN +D + +    
Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ-HKIKKIILNANDKYAKKWLR 251

Query: 238 K-------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           K       +  +  +    +             K     + +E +       +    IGY
Sbjct: 252 KLSDKYTIAVTIQNEKQKKYSTKW---INATGIKYNVNSTDVEFESSWGQGILSTCLIGY 308

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              QN+L++   +  +   +   I       P  GR +++          +ID  Y   P
Sbjct: 309 FNIQNLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKFDV--FGKPKVIID--YAHTP 364

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++K A++ +     + + +   + G   E  +  +     ++E ++   I
Sbjct: 365 DALKKALNAIKS---YYKKKIWCIFGCGGERDQTKRPLMGSISEKIADRVI 412


>gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
 gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
          Length = 512

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 155/457 (33%), Gaps = 46/457 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI +A+ +GA LV+   D     G +    
Sbjct: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYRA 102

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 162

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 163 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
           V + ++  HL     +E  A+AK  +F          +N DD+      K    A+G+  
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +    K   A     R          +  +      E+    IG   A N+L+ L  +  
Sbjct: 282 V---AKPNTAQAIWARHVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 338

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +    +       P  GR + ++              Y   P +++ A+  L     
Sbjct: 339 LGFEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---V 391

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
           H  G+  A++G   +     +     +AE  +      V L+  +  +         +  
Sbjct: 392 HCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVA 447

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L      H          +        D++++  K 
Sbjct: 448 GLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|94501895|ref|ZP_01308405.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
 gi|94425948|gb|EAT10946.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
          Length = 485

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 153/427 (35%), Gaps = 47/427 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +      +       IP+    ++L  L +             IA+ G+ G
Sbjct: 79  ANVVVVSTAINVENPEIQYAQQNRIPIVRRAEMLAELMRYR---------HGIAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L+   K           IG  LT A     +    + +  +   +  FL
Sbjct: 130 KTTTTSLVASILAEGDKDP------TFVIGGRLTSAGTNAQLGGSRYLVAEADESDASFL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P ++++T I   H+  +      +     E    L   G   L  +D     +  
Sbjct: 184 --HLQPMVSIVTNIEADHMDTYGGDFNRVKKTFIEFLHNLPFYGLAVLCIEDETIREILP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMAQN 295
           +      + + ++G S +AD+  ++ KQ    +   V+  G  K +++     G H   N
Sbjct: 242 EVS----RPVVTYGFSDSADYYAQEIKQEGIYTSFTVKRPGDNKDLQIRLRMPGRHNVLN 297

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + + +      D  I+AL  F     R +       Q    ++ + Y  +P  +  
Sbjct: 298 ALSAIAVATDEGIADDAIIRALEKFQGVGRRFQICGEYPLQDDSVMLVDDYGHHPTEVAV 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWL 406
            I  + +  P    R + V          ++  + D  ++LS          Y+     +
Sbjct: 358 TIDAIRKGWPEK--RLLMVF--QPHRYTRTRDLYDDFVQILSEVDSLVLLDVYSAGEDEI 413

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G    +L  ++     V   +      +   ++  +  GD+++ + +   G   +   L
Sbjct: 414 PGADGRSLARSIRGRGRVDPIFVPRSANVGDVLKDIVQPGDILITQGAGDVGSMAI--DL 471

Query: 465 LEEFPAI 471
            +  PAI
Sbjct: 472 AKNLPAI 478


>gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 464

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 172/473 (36%), Gaps = 62/473 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  I    I       + G+ ++++S  P + F A++G    G D+I  A+ KG
Sbjct: 1   MNISQLLANIVQTKI----DIEIKGLCLNAQSTQPGDLFIALQGKLTHGADYINQAIDKG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTK 123
              ++V++  +       IP   +D++   L  L     +   K  II+ITG+ GKT+  
Sbjct: 57  CVAILVDSKEI----ECVIPSIRIDNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVA 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--------------DVDFGIFELGM 169
             ++  L+ +      IG+        L+L   P               ++   I E+  
Sbjct: 113 YFISQLLTKLGIKNGLIGTLGITHSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSS 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R     ++   A+ T +   HL     +++  + K ++F  L+   ++ LN DD
Sbjct: 173 HALTQDRIAGLNIKQ--AIFTNLTQDHLDYHHTLDKYQATKEKLFV-LDTVESVILNQDD 229

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           S ++     +     K   S+      DF     K   +     VQL     E     +G
Sbjct: 230 SHYKHFLNITK---DKKRISYSLG---DF--DSIKTIEQG--FLVQLDHYVFE--IPFLG 277

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L  L  V  L    D  I       P  GR +R    L       ID  Y   
Sbjct: 278 EFNLLNILAALNSVEALGFKRDDIIPLFYQLLPPPGRMQRIEPHL-----AWID--YAHT 330

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
           P ++  AI+ L +  P+ + R +   G     G   +    ++ ++ S      + L+  
Sbjct: 331 PDAIGNAITTLKKHYPNFKIRIVFGCG-----GNRDKDKRAEMGKIASNL-ADTIILTND 384

Query: 408 ---GFHVLALKDALPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVV--KS 451
                +   + + +   I   Y     E          ++L + + +++  K 
Sbjct: 385 NPRSENPKTIIENILSGIDDSYKLDIIENRQLAIETAITTLKENECLLIAGKG 437


>gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16]
 gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 477

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 109/431 (25%), Positives = 163/431 (37%), Gaps = 55/431 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
            GHD    A   GA  VVV+T        V +  S  IPV     +L  L +L       
Sbjct: 55  HGHD---AANVTGANAVVVSTAVSGDNPEVLAARSKRIPVVPRAVMLAELMRLKQG---- 107

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L+               IG  L  A     +  G F
Sbjct: 108 -----VAIAGTHGKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDF 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G   
Sbjct: 157 IVAEADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKS-- 280
           L  DD     +         K +  +G +++A  +    +    Q    VQ  L G +  
Sbjct: 215 LCVDDPNVREIL----PFVSKPVVRYGFAEDAQIRAVDARAVDGQMHFTVQRQLNGHTEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            +E+V +  G H  QN L  + I + L       +KAL  FH    R +RY         
Sbjct: 271 PLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPDGA 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTL+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VL
Sbjct: 331 GTFTLVDD-YGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVL 385

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +    S V+ +G   +   D  AL R++ V       + E M+ +   I  ++  GD
Sbjct: 386 GTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILDAVRPGD 445

Query: 446 VVVVKSSNSCG 456
           VVV   + S G
Sbjct: 446 VVVTMGAGSIG 456


>gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale
           M104/1]
          Length = 490

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 157/479 (32%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       ++ +  DSR +     F  I G   D HDFI   V+KG
Sbjct: 1   MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+    G   +    VDD   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVTPIEG---VTYIKVDDTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLT---------LARMPVDVDFGIFELG 168
             M+   L S       IG+      +  I    T         L +  VD       + 
Sbjct: 118 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +          I V T + P H+         +    K+ +F           N
Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADYMHCKSLLFRQCRLG---IFN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD   E +           + ++G     +      +   E   + V+         +V
Sbjct: 235 GDDEHLEGIMKGHTC----QVETYGYKSTNNLVAENVELKKEHGALGVKYHVSGLLDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  + I      D           H    +G+     + + +  +ID
Sbjct: 291 EVNVPGKFSVYNSLTAIAICHHFNVDKKAI---GEALHHVSVKGRIEIVPVTKRYTLMID 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  ++++ ++ L +  P   GR + + G     G  ++S   ++ EV S      
Sbjct: 348 --YAHNAMALESLLTTLKEYEP---GRLVCLFGC---GGNRAKSRRYEMGEVSSRLADLT 399

Query: 404 VWLSG-----FHVLALKDALP--RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S        +  + D L         Y           +   +  DGD++V+  K 
Sbjct: 400 VVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 458


>gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           EO147]
          Length = 464

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 158/423 (37%), Gaps = 47/423 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLGVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +      L  + +  +G + +A  +    +    +    V  +G+  + VV
Sbjct: 216 CIDDPNVRQIV----PLISRPVVRYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H  QN L  + I S L        +AL+ F+    R +RY      G    + +
Sbjct: 272 LNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLID 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y  +P  M A I   +       GRR  VL         ++    D   VLS  +    
Sbjct: 332 DYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALVL 387

Query: 402 SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   +     DAL R++         +  T+D +   +      GDVV+   + 
Sbjct: 388 TEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARAGDVVITMGAG 447

Query: 454 SCG 456
           S G
Sbjct: 448 SIG 450


>gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
 gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
          Length = 527

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 142/373 (38%), Gaps = 34/373 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLS 82
              V G++ DSR++ P + + A+ G +  G DF + AV  GA  V+ +    A + G ++
Sbjct: 56  DVRVTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAARLAGRVA 115

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV   DD    L      V        T++ +TG+ GKTTT  +L   L +   T   +
Sbjct: 116 VPVLVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAAGHTTGLL 175

Query: 141 GSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+    IG                  L    +   V   + E+    L + R     +R 
Sbjct: 176 GTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHR--VDALRF 233

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A  T ++  HL     +E+  +AKA +FE   ++    +  DD +   L  +      
Sbjct: 234 TGAAFTNLSQDHLDFHPTMEDYFAAKATLFEA-GRSKDAVICVDDDWGRRLARQRPDART 292

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            ++       +AD+           +   V    G   ++     G     N L  L ++
Sbjct: 293 YSV----TGADADWWPEDVVAGPAGTVCRVLGPDGAKADLSVTLPGRFNLANALGALALL 348

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +     ++ A + +S      GR +R     + G   L    +   P    A +++L  +
Sbjct: 349 AATGVPLEVAAEGISSLTGVPGRMERV----DGGQPFLAVVDFAHTPD---AVVTLLEAV 401

Query: 364 SPHGEGRRIAVLG 376
            P   GR I VLG
Sbjct: 402 RPLVTGRVIVVLG 414


>gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 470

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 146/402 (36%), Gaps = 44/402 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       IPV    ++L  L +L          T IA+ G+ GKTTT  +L
Sbjct: 86  AVTNDNPEVVVARERGIPVIPRAEMLAELMRLR---------TGIAVAGTHGKTTTTSLL 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +            +  + +   L         G  E  ++   E       + P  
Sbjct: 137 ATIFTEAG--------LDPTVIIGGRLNAYGAGARLGQGEYLIAEADESDGSFLCLAPIA 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +V+T +   HL +++GIE I  A  E   G+   G   +  DD     L  + +    + 
Sbjct: 189 SVVTNVDADHLDHYAGIEAIDDAFVEFLNGIPFYGVNVVCLDDPGVARLLPRIN----RP 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             ++G  + A  + R  +    +S   V L G+ + E+  +  G H  QN L  +G+   
Sbjct: 245 FVTYGFGEKARLRGRILE-TGAKSRFLVSLDGEDLGEMRLNHPGRHNVQNALGAIGVSLE 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS---- 361
                    +AL+ F    G G+R+     +    ++D+ Y  +PA ++A ++       
Sbjct: 304 TGIAPAVIAEALAKFG---GVGRRFEIKGERAGVVVVDD-YGHHPAEIRATLATARAVYP 359

Query: 362 ------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+ GD C   E + +       +  +Y  S   + G    +L 
Sbjct: 360 DRRLVVAFQPHRFSRTKALFGDFCTCFEAADTL-----LLTEIYPASEAPIPGVSGESLA 414

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + +     V Y      +   +   L  GD+++   + S 
Sbjct: 415 RGIRQVSKTDVAYYPDFAAVEAALPGVLRPGDLLLTLGAGSV 456


>gi|307824832|ref|ZP_07655055.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
 gi|307734190|gb|EFO05044.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
          Length = 480

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 162/412 (39%), Gaps = 53/412 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           + +       IPV    ++L  L +             IA+ G+ GKTTT  +    L+ 
Sbjct: 90  EEIDEAYIQRIPVIPRAEMLAELMRFRFG---------IAVAGTHGKTTTTSLTASILAE 140

Query: 133 IK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T+   G  N+      + A++ +   + + E   S    +      ++P +A++T
Sbjct: 141 GGLDPTFVIGGRLNS----AGSNAKLGLGH-YLVAEADESDASFL-----YLQPMMAIVT 190

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H++ +    + +     E    L   G   +  DD     +  +      K + +
Sbjct: 191 NIDQDHMATYEGSYQRLKDTFKEFLHHLPFYGLAVMCLDDEGVRAVLPEIS----KPVTT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +G  ++AD +    KQ    +  +V  +G    ++V  +  G+H   N L  + + + L 
Sbjct: 247 YGVHEDADVRAVNIKQEGMHTSFDVIRRGDYPPLQVTLNMPGWHNMLNALAAISVATKLA 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 IK+L  F   +G G+R++      + +G  TL+D+ Y  +P  + A +  L Q 
Sbjct: 307 VGDAAIIKSLGAF---KGIGRRFQLNGDLPMGEGKLTLVDD-YGHHPREIAATLEALRQA 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--AL 418
            P  + R + V          ++    D  +VLS  ++     V+ +G   +   D  AL
Sbjct: 363 WP--DRRSVIVF--QPHRYTRTRDLFEDFVQVLSTVDVLILMDVYAAGETAIPGADGRAL 418

Query: 419 PRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            R+I V       + E  + L   +   ++  DV++   + + G  ++   L
Sbjct: 419 SRAIRVRGQVDPVFVENWEELPQILAGIVLADDVILTMGAGNVG--QIAAQL 468


>gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 469

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 147/421 (34%), Gaps = 45/421 (10%)

Query: 56  FILHAVQ--KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I H ++  KGA +VV       N   + +   L IPV     +L  L +          
Sbjct: 64  YIGHRLENIKGADVVVRSSAVDFNNPEIVAARELMIPVIPRAAMLAELMRFR-------- 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  +++  L+         G  +    +   L     +   G    
Sbjct: 116 -HGIAIAGTHGKTTTTSLVSSLLAE--------GGLDPSFVIGGKLNSCGANAQLGKSAY 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
            +    E       ++P +AV+T I   H+  +    E++ +   E    L   G   + 
Sbjct: 167 FVVEADESDASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVC 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVV 284
            +D     +         +   ++G  + A ++   W Q    S   V      K + + 
Sbjct: 227 LEDEEICRILPAIQ----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQ 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L ++ I + L  D D+ ++ L  F     R +       +    +I +
Sbjct: 283 FQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIVD 342

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------ 398
            Y  +P  + + I    ++ P    R + V          +QS H    +VLSL      
Sbjct: 343 DYGHHPQEILSTIDAFRRVWPE--RRLVHVF--QPHRYTRTQSLHRQFVDVLSLSDELLL 398

Query: 399 ---YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              Y      + G     L + +          +   L   +   + DGDV++++ + S 
Sbjct: 399 MDIYAAGETAIPGVTSENLANEIRSRDKRVTIVSEQSLKATLDEFIKDGDVILMQGAGSI 458

Query: 456 G 456
           G
Sbjct: 459 G 459


>gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           130b]
          Length = 469

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 147/421 (34%), Gaps = 45/421 (10%)

Query: 56  FILHAVQ--KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I H ++  KGA +VV       N   + +   L IPV     +L  L +          
Sbjct: 64  YIGHRLENIKGADVVVRSSAVDFNNPEIVAARELMIPVIPRAAMLAELMRFR-------- 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  +++  L+         G  +    +   L     +   G    
Sbjct: 116 -HGIAIAGTHGKTTTTSLVSSLLAE--------GGLDPSFVIGGKLNSCGANAQLGKSAY 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
            +    E       ++P +AV+T I   H+  +    E++ +   E    L   G   + 
Sbjct: 167 FVVEADESDASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVC 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVV 284
            +D     +         +   ++G  + A ++   W Q    S   V      K + + 
Sbjct: 227 LEDEEICRILPAIQ----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQ 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L ++ I + L  D D+ ++ L  F     R +       +    +I +
Sbjct: 283 FQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIVD 342

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------ 398
            Y  +P  + + I    ++ P    R + V          +QS H    +VLSL      
Sbjct: 343 DYGHHPQEILSTIDAFRRVWPE--RRLVHVF--QPHRYTRTQSLHRQFVDVLSLSDELLL 398

Query: 399 ---YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              Y      + G     L + +          +   L   +   + DGDV++++ + S 
Sbjct: 399 MDIYAAGETAIPGVTSENLANEIRSRDKRVTIVSEQSLKATLDEFIKDGDVILMQGAGSI 458

Query: 456 G 456
           G
Sbjct: 459 G 459


>gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter litoralis HTCC2594]
 gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 495

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 162/474 (34%), Gaps = 46/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L +A  G +I       V+G +ID R +AP   F A +G   +G D+I  A    
Sbjct: 1   MKLARLAEA-AGIAIEGGEDIAVSGFAIDHRKVAPGTVFGAFQGSAVNGEDYISQA---- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                    +     ++   V   +D    A   LA         TI+A+TG+ GKT+T 
Sbjct: 56  -VAAGAVAVVAQPEATVEGAVHIAEDTPRRAFALLAAQYFTPVPKTIVAVTGTNGKTSTV 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
           EM         +  A IG+             +                   V    +E 
Sbjct: 115 EMTRQLWRMAGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226
               L + R     +    A  T  +  HL     ++E   AK  +F+  ++  GT  + 
Sbjct: 175 SSHGLSQYRN--EGLPVAAAAFTNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVW 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +S +     +        +++ G+    D +LR          +E++  G++ ++   
Sbjct: 233 TGNSEWTAQAIERARQRELRLFTVGEQGE-DIRLRARTPTQLGQELEIEHAGETRKLRLP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG +   N L   G+      D       +S   P  GR +R           +    Y
Sbjct: 292 LIGEYQVANALTAAGLAIATGTDPAAVWDGVSRLQPVRGRLERAVITATGAPVYV---DY 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++AA+   + + PH EGR + + G     G+        + EV S      V +
Sbjct: 349 AHTPDALEAAL---AALRPHVEGRLLCIFGA---GGDRDTGKRAPMGEVASRM-ADAVIV 401

Query: 407 S-----GFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           +     G    A++  +      +  E  D       +  S    D+V++  K 
Sbjct: 402 TDDNPRGEDPAAIRGQVLEGAGDNAREMADRREAIREVIESAAAKDIVLIAGKG 455


>gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio cholerae]
          Length = 495

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 153/455 (33%), Gaps = 42/455 (9%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G +    
Sbjct: 26  VITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 85

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 86  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 145

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 146 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 205

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V + ++  HL     +E  A+AK  +F          +N DD+       +       ++
Sbjct: 206 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +   +  A    R+         +  +      E+    IG   A N+L+ L  +  L 
Sbjct: 265 VTKPNTAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLG 323

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    +       P  GR + ++              Y   P +++ A+  L     H 
Sbjct: 324 FEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---VHC 376

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G+  A++G   +     +     +AE  +      V L+  +  +         +   L
Sbjct: 377 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVAGL 432

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H          +        D++++  K 
Sbjct: 433 TYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|330811578|ref|YP_004356040.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379686|gb|AEA71036.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 486

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 156/431 (36%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQKGAGL--VVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +  A    +VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENAANADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +         +   ++G  + AD +    +Q   Q++  V   
Sbjct: 219 PFYGLAVVCLDDPVVREILPLIK----RPTMTYGFGEEADVRAINVRQQGMQTFFTVLRP 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNALATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPTEVAAVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG
           19424]
 gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 163/431 (37%), Gaps = 55/431 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
            GHD    A   GA  VVV+T        V +  S  IPV     +L  L +L       
Sbjct: 55  HGHD---AANVSGANAVVVSTAVSGDNPEVLAARSQRIPVVPRAVMLAELMRLKQG---- 107

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L+               IG  L  A     +  G F
Sbjct: 108 -----VAIAGTHGKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDF 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
            +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G   
Sbjct: 157 IVAEADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS-- 280
           L  DD     +         K +  +G +++A  +    +    Q    V  QL G +  
Sbjct: 215 LCVDDPNVREIL----PFVSKPVVRYGFAEDAQIRAVDARAVDGQMHFTVLRQLNGHTEP 270

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336
            +E+V +  G H  QN L  + I + L       +KAL  FH    R +RY         
Sbjct: 271 PLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPDGA 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G FTL+D+ Y  +P  M A ++      P     R  VL         ++    D  +VL
Sbjct: 331 GTFTLVDD-YGHHPVEMAATLAAARGAFPE----RRLVLAFQPHRFTRTRDCFEDFVKVL 385

Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
              +    S V+ +G   +   D  AL R++ V       + E M+ +   I +++  GD
Sbjct: 386 GTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILNAVRPGD 445

Query: 446 VVVVKSSNSCG 456
           VVV   + S G
Sbjct: 446 VVVTMGAGSIG 456


>gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
 gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
          Length = 462

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 157/415 (37%), Gaps = 45/415 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+    +IP+     +LG + K             I ++G+ GKTTT  M
Sbjct: 77  AAIHPSNPEYAAAVEKNIPLLTRAQLLGEMMKSY--------KIPICVSGTHGKTTTTSM 128

Query: 126 LTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +  L ++ K     +G     I     +     + D  + E        + F      P
Sbjct: 129 ASHVLMAADKNPTISVGGILPLIKGNYHIG----NTDTFLMEACEYTNSFLDFF-----P 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++I  I   HL  F  +E+I ++  +  E L   GT+ +N DD  F+++         
Sbjct: 180 KISIILDIDADHLDFFKDLEDIRNSFRKFAELLPADGTLIINADDPAFKMITKDLPC--- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
             + ++  S   ++            +      +G+ +        G H   N L  + +
Sbjct: 237 -EVITYSLSNIGNYTADMITYDELGHASFRALYKGEPIGNFALQVPGSHNVSNALAVIAL 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D DT  K    FH   G  +R+         T+ID+ Y  +P  +KA ++   +
Sbjct: 296 AEKLGIDADTIQKGFDSFH---GTNRRFEQKGEMNGATVIDD-YAHHPTEIKATLNTARR 351

Query: 363 IS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +          PH   R  ++L    E   LS + H+ LA++ +   +    + G     
Sbjct: 352 VPHKTIWCVFQPHTYTRTKSLLPQFAE--ALSIADHVVLADIYAARELD---IYGISSKD 406

Query: 414 LK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L+ + +       Y  +   +  ++++++ +GD+++   + +    ++   L+ E
Sbjct: 407 LQNEIIKLGTDCDYFPSFAEIEAYLRANVKEGDLLITMGAGNI--VQVGEALVTE 459


>gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 155/412 (37%), Gaps = 43/412 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     ++    IP+    ++LG + +    A        +A++G+ GKTTT  M
Sbjct: 97  AAIHEDNPEFMAVKEKGIPMLSRAELLGEMMRNYKQA--------VAVSGTHGKTTTTSM 148

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L          G+ +  I V   L  +  ++  G  EL ++   E         P 
Sbjct: 149 ITDIL--------LAGNLDPTISVGGILQDIGGNIRVGSPELFVTEACEYTNSFLSFHPT 200

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VI  I   HL  F  I++I  +     E L   G + +N   S  + ++  +  LG +
Sbjct: 201 MEVILNIEEDHLDFFKDIQDIRHSFRLFAEKLPSRGLLVIN---SGIDAVEEITKGLGCR 257

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            + +FGK  ++ +  +        +   ++ +QG+ +  +  G+ G H   N L  + + 
Sbjct: 258 -VVTFGKDSSSTYTAKDITYDGFARPSYDLVIQGEVVNRITLGVTGEHNVYNSLAAIAVA 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L A  D  +  L  F    G  +R+      G  T+ID+ Y  +P  +KA +S     
Sbjct: 317 MELGAGFDAVMAGLRKFT---GTDRRFEKKGEIGGITIIDD-YAHHPQEIKATLSAAKNY 372

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L    E    +         +  +Y        G     +
Sbjct: 373 PHRKLWCVFQPHTYTRTKAFLDQFAETLSAADE-----VILADIYAARETDTLGVSSRDI 427

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + R     HY  + D +  FI  + ++GDV++   +      ++   LL
Sbjct: 428 AQRIERLGTKAHYIPSFDDIETFILENCINGDVLITMGAGDI--VKVGEKLL 477


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 161/420 (38%), Gaps = 42/420 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTT 121
           +GA  +VV+T +          V    D+    L++  + A L ++   IA+ GS GKTT
Sbjct: 70  RGADAIVVSTAIPYDNPE----VIAAWDLRIPKLHRSDINAALVNEYDGIAVAGSHGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+ + L     +   I      +    T A++     + + E   S    ++     
Sbjct: 126 TTSMIGVTLDRAGVSPTVI--VGGEVPDLGTNAKLGTS-RYLVSEADESDGSFLK----- 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RPHIAV+T +   H+ ++  +E+I  A       ++  GT  L Y++     L A++  
Sbjct: 178 LRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVLCYENEILRRLGAET-- 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
              +T+ S+     AD++    + C       V  +G ++  +  H  G H   N L  +
Sbjct: 236 --DRTVVSYAIDAAADYRAADIETCGSVISFTVFERGTALGRISLHIPGRHNVLNALACV 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +   D D    AL+ FH   G  +R++    +    ++D+ Y  +P  + A ++  
Sbjct: 294 AVARLAGLDFDRIADALAHFH---GAKRRFQTKGKERGIWVVDD-YAHHPTEIAATLAAA 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHVWLSGFHV 411
            Q  P   GR + V          +Q    +            +  +Y      + G   
Sbjct: 350 RQTEP---GRLVCVF--QPHRYSRTQLLRAEFGGCFAAADLLLLTDVYAAGEAPIPGISG 404

Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRLINLLLE 466
             L + + R       Y      L  ++   +  GD+V+   + +        L+  L E
Sbjct: 405 ETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGDLVITMGAGNI-LEVGEELVARLKE 463


>gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arsenophonus nasoniae]
          Length = 475

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 151/391 (38%), Gaps = 34/391 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR +A  + F A+KG   DG  +I  A+ +G   ++         G++     +PV 
Sbjct: 6   TLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGVPVI 65

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            ++D+   L+ L         +K  +I +TG+ GKTTT +++      + +  A +G+  
Sbjct: 66  YINDLNNQLSLLAGEFYQHPAAKLRLIGVTGTNGKTTTTQLIAQWAKGLGEVSAVMGTVG 125

Query: 145 NHIGVPLTL--------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N I   + L               ++ +D    +  + +S  G ++     +    AV T
Sbjct: 126 NGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFTAAVFT 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKT 246
            ++  HL     ++  A+AK  +F   +      +N DD     + E L           
Sbjct: 186 NLSRDHLDYHGDMQNYAAAKWLLFSTHKSDKQ-IINVDDETGLQWLEKLPQACAVSMENR 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I +    + A   + +       + +          +    +G     N+++ +  + ++
Sbjct: 245 IPT--DWQGAWMLVEQVDYHDRGATIHFNSTWGKGSLKSPLMGAFNVNNVMLAMATLLMM 302

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  IK+     P  G   R     + G  T++ + Y   P +++ A+S L     H
Sbjct: 303 GYPFEAVIKSSHAIQPVCG---RMEVFTSPGRPTVVVD-YAHTPDALEKALSALR---LH 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             GR   V G   +  +  ++    +AE  +
Sbjct: 356 CRGRLWCVFGCGGDRDKGKRALMGSVAEQYA 386


>gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
 gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
          Length = 564

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 145/382 (37%), Gaps = 33/382 (8%)

Query: 16  GHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
              +G+   G   + GI+ DSR++ P + + A+ G    G DF   A   GA  V+ + +
Sbjct: 70  ATLLGLPESGAAQITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAAAVLTDPE 129

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +  +PV  V D    + +LA     R       + ITG+ GKTTT  ++   L 
Sbjct: 130 GAERAAATGLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAYLVEGGLR 189

Query: 132 SIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFLTHLV--- 182
           +  +T   +G+    IG     +    P   D       M   G     +   +H +   
Sbjct: 190 AAGRTTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLG 249

Query: 183 -----RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                   +AV   ++P H+   +G+E+   AKA++F    +     +N DD +   L  
Sbjct: 250 RVDGCVFDVAVFNNLSPEHMEFHTGMEDYFQAKAQLFTE-RRARLGVVNLDDEYGRRLAK 308

Query: 238 KSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQ 294
           ++       + +F       AD++          S + +   +G+ +       G     
Sbjct: 309 EASI----PVVTFSAAGDPAADWRAEDVVSGHMDSTLTLVGPEGQRVRAKAPLPGPFNVA 364

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  +  ++    D  TA   ++      GR +R     + G   L    Y     +++
Sbjct: 365 NTVAAIVTLAAAGLDPQTAADGVAAVPGVPGRLERV----DAGQPYLAVVDYAHKTDAVE 420

Query: 355 AAISVLSQISPHGEGRRIAVLG 376
           + +  L +++    G+   VLG
Sbjct: 421 SVLRALREVTT---GKLHIVLG 439


>gi|323491028|ref|ZP_08096220.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
 gi|323314692|gb|EGA67764.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
          Length = 486

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 140/401 (34%), Gaps = 40/401 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +  +  IPV    ++L  L +             IA+ G+ GKTTT  ++T   S     
Sbjct: 100 AARAARIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +                I E   S    +      ++P ++++T I   H
Sbjct: 151 ---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADH 202

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E +     +    L   G   +  DD     L         + + ++G S++
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCVDDPVVRELIPGIS----RQVITYGFSED 258

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q  +Q    V  QGK  +++  +  G H A N    + + +      +  +
Sbjct: 259 ADVRIANYRQEGQQGKFTVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDISDEAIL 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            A++       R              ++ + Y  +P  +   I      +   + R + +
Sbjct: 319 NAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIQAAR--NGWQDKRLVMI 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH---- 425
                     ++  + D A VL   ++     V+ +G   +A  D  AL R+I       
Sbjct: 377 F--QPHRYSRTRDLYDDFANVLEQVDVLIMLDVYSAGEKPIAGADGRALCRTIRSRGKLD 434

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 435 PIFVPDSKALPSVLANVLQDGDLVLTQGAGDVG--KVAKQL 473


>gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
 gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
          Length = 475

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 169/427 (39%), Gaps = 52/427 (12%)

Query: 56  FILHAVQK--GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           ++ HA ++  GA +VV +T        V +  + +IPV     +L  L +L         
Sbjct: 54  YVGHASEQVTGANVVVTSTAVKSDNPEVVAAKNRNIPVVPRALMLAELLRLR-------- 105

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T IAI G+ GKTTT  ++   L++           +    +   L         G  E 
Sbjct: 106 -TGIAIAGAHGKTTTTSLIASILAAAD--------MDPTFVIGGKLEAAGCHAKLGSGEF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            +    E       ++P +AV+T I   H+  +     ++     E  + L   G   + 
Sbjct: 157 IVVEADESDASFLYLQPVLAVVTNIDADHMETYGYDFNKLKQTFVEFLQHLPFYGMAVVC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSME 282
            DD+    +         K+I ++G S++A  +    +  + Q      +      + ++
Sbjct: 217 IDDANIREVMPAI----TKSITTYGLSEDAQVRATNIQHSNHQMKFTAVIGVNGSARRLD 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFT 340
           +  +  G H  QN L  + + + +       ++AL+ F   E R +++       Q  FT
Sbjct: 273 ITLNLPGLHNIQNALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEIRLSMQKSFT 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID+ Y  +PA M+A +       P   GRR  V+         ++    D   VLS  +
Sbjct: 333 LIDD-YGHHPAEMEATMKAARGAFP---GRR-LVVAFQPHRYTRTRDVFEDFTRVLSQAD 387

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVV 449
           +   + V+ +G   +   D  +L RSI V       Y E +D L + I   + D D+V+V
Sbjct: 388 VLLLTEVYPAGEDPIVAADSKSLARSIRVLGKVEPIYIEDIDDLSIAILDVVQDNDIVLV 447

Query: 450 KSSNSCG 456
             + S  
Sbjct: 448 MGAGSVA 454


>gi|170720131|ref|YP_001747819.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida W619]
 gi|229620051|sp|B1J3L3|MURC_PSEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169758134|gb|ACA71450.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida W619]
          Length = 482

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 152/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +  A   V+V +  +              IPV    ++L  L +          
Sbjct: 65  FVGHRAENAAHADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------- 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  +L    ++              IG  LT A     +    + +
Sbjct: 117 -HGVAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGTSRYLI 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P +AV+T I   H++ +     ++     E    L   G   + 
Sbjct: 170 AEADESDASFL--HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD     +  +      +   ++G  + AD +     Q   Q+   V  + +  +EV  
Sbjct: 228 LDDPVVREILPQVK----RPTVTYGFCEEADIRAINVSQKGMQTHFTVLRRDREPLEVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I +      +  ++ LS F     R + Y     +G   ++ + 
Sbjct: 284 NMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPVEGGSVMLVDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I     +      RR+ ++         ++  + D  +VL   N+    
Sbjct: 344 YGHHPTEVAAVIKA---VRGGWPSRRLVIVYQ-PHRYSRTRDLYDDFVQVLGDANVLLLM 399

Query: 403 HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + +  
Sbjct: 400 EVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILLCQGAGD 459

Query: 455 CG 456
            G
Sbjct: 460 VG 461


>gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
 gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
          Length = 490

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 17  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRGAVAIIAGKD--MAIA 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 75  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 193 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AIEAATL 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 252 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 310

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 311 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 365 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 421 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|284046367|ref|YP_003396707.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
 gi|283950588|gb|ADB53332.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
          Length = 552

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 150/407 (36%), Gaps = 29/407 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L++V   ++  + +  +      D    L       R   +  ++ ITGS GKTTTK
Sbjct: 145 GAVLLLVAPWLLGGVVNRMLRPVQQADNRRFLRSAEQRLR-DVRPLVVGITGSYGKTTTK 203

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  L  +   Y    S+N+ +GV   +   +       + E+G    G+++ L  LV
Sbjct: 204 ACVTEVLELLGPAYPTPASFNSTLGVVRAINEGLQPQHQSFVVEMGAYRRGDVQELCDLV 263

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V+T I PAHL  F  ++    AK E+ + L   G      DD     + A++ + 
Sbjct: 264 HPRIGVLTAIGPAHLERFGSLDVTEQAKGELADALPAEGLFVTRADDERTLRV-ARTRSA 322

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----------------GKSMEVVHH 286
               +++     +AD      +  + ++   +  +                 +  +V   
Sbjct: 323 ARALLFAPAPHPDADVWAEDVRLENGRTHFTLVARASGDGGASGDGGAAAGEQRADVRAR 382

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L    +       +    +AL    P + R              +ID+SY
Sbjct: 383 LLGDHNVANLLAAAAVGIGHGLALADVARALGRVTPPDHRLAP--IVNRAAGIVVIDDSY 440

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP    AA+ VL     H   RR+ V   M E+G   Q  +  L E+ +        L
Sbjct: 441 NANPEGAAAALGVLRD---HPATRRLLVTPGMVELGAREQEENRRLGELAAGV-ADIAIL 496

Query: 407 SGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         ++ A      +            +      GDVV+ 
Sbjct: 497 IGARGEDVAAGMRAAGAPEERILVLPDGPAAHAKVAELTRSGDVVLF 543


>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
          Length = 502

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/491 (20%), Positives = 177/491 (36%), Gaps = 54/491 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++++ I    I       V G++ DSR +    AF  I G   +GH +I   
Sbjct: 1   MGEAMKISNIIEKINASVISGSCDADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYIQDV 60

Query: 61  VQKGAGLVVVNT--DMVASIGSLSIP----VFGVDDVLGALNKLAVAA--RLRSKATIIA 112
           + +GAGL+VV++  D +       IP    V   DD   A   ++ A       K   I 
Sbjct: 61  IGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLFTIG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166
           ITG+ GKTTT  M+   L S       IG+    IG     A       + I E      
Sbjct: 121 ITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFAKMV 180

Query: 167 --------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEG 216
                   + +S  G +   T  ++ +I V T I P H+     S  E+  S KA++F  
Sbjct: 181 EAGCEAVVMEVSSQGLMLNRTAGIQFNIGVFTNIEPDHIGPNEHSSFEDYLSCKAKLFRQ 240

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +      +N DD   + + A +       +  +G S+ AD +    +   E   +  + 
Sbjct: 241 CD---IGIVNADDEHVDRILANATC----RVEKYGFSETADIRAADKELLYEHGKLGTKY 293

Query: 277 QGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG--RGKRYR 331
                 ++++     G     N L  + +      D     KAL     +          
Sbjct: 294 HVSGLVNLDIELCMPGNFSIYNSLCAIAVTRHFNVDEQRLKKALYDVRVRGRIDIVDLAE 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              ++  FT++ + Y  N  ++++ +  L + +P    R + V G     G   +    +
Sbjct: 354 VNASRRDFTIMVD-YAHNAMALESLLKTLKEYNPK---RIVTVFGC---GGNRDRDRRFE 406

Query: 392 LAEVLSLYNISHVWLSG----FHVLALKDALPRSI---HVHYSETMD--GLFLFIQSSLV 442
           + EV    +   +  S         A+   +   I      + E  D      +   +  
Sbjct: 407 MGEVSGRLSDFTIITSDNPRNEEPEAIIADIVTGISRTSGRHVEIADRREAIKYAVDNAQ 466

Query: 443 DGDVVVV--KS 451
            GDV+VV  K 
Sbjct: 467 PGDVIVVAGKG 477


>gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 492

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/471 (20%), Positives = 158/471 (33%), Gaps = 64/471 (13%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GIS  S  I P   F AI+G   DG+ +   AV+ GA  VV  TD    +  L+IPV  V
Sbjct: 13  GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVV--TDAPDRLPPLAIPVAVV 70

Query: 89  DDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D     A               ++ +TGS GKTT   ML     +       IG+   +
Sbjct: 71  PDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGTVRVN 130

Query: 147 IGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +G     +R+                   V     E+    + E+  + H V     ++T
Sbjct: 131 VGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGV-EMSRVDH-VTFSCGILT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL       +  +AK      L  +  + +N DD     + A    L    + + 
Sbjct: 189 NICADHLDFHHTFADYLAAKERFLTLLGPS-PLVVNRDDDHCRRMAA----LAGGPVIAV 243

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQ---------LQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  AD   +     +  S   +          +    + V     G H  +N L+   
Sbjct: 244 SLTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAA 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +     D    A S F   E R + YRC    G FT+ID++   NP S+ A  + ++
Sbjct: 304 AGLLHGISPDEIAAAFSSFQGVERRLEIYRC----GGFTVIDDT-ALNPGSIDAVFATIT 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLA------------EVLSLYNISHV----- 404
                   RR+ V+  +   G    + +   A            E++   +   V     
Sbjct: 359 TFRY----RRLVVVNAI--RGGRGAAINALNAITMARWQAALPFELIVTASADQVGPADT 412

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +      L +         +   +          L DGD++V+  +   
Sbjct: 413 VTAEERQAFLGELSRTGAAFSFYLDLQTAIQSALQRLYDGDLLVLLGAQGM 463


>gi|229588491|ref|YP_002870610.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
 gi|259509778|sp|C3KCT1|MURC_PSEFS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229360357|emb|CAY47214.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
          Length = 481

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 156/425 (36%), Gaps = 47/425 (11%)

Query: 51  YDGHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           + GH    +A +         V  +   VA+     IPV    ++L  L +         
Sbjct: 65  FIGHR-AENAAEADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR------- 116

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++    ++     T+   G  N       T A++     + I
Sbjct: 117 --HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGTS-RYLI 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      ++P +AV+T I   H++ +     ++     E    L   G  
Sbjct: 170 AEADESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLA 224

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
            +  DD     +  +      +   ++G S++AD +    +Q   Q++  V    +  ++
Sbjct: 225 VVCLDDPVVREILPQVK----RPTVTYGFSEDADVRAINVRQEGMQTYFTVLRPDREPLD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +G   ++
Sbjct: 281 VSVNMPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQLPVEGGDVML 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y  +P  + A I  +    P    R + V          ++  + D   VL+  N+ 
Sbjct: 341 VDDYGHHPTEVAAVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVNVLADANVL 396

Query: 402 --SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
               V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPIVKPLLRAGDILLCQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDIG 461


>gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
 gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
          Length = 518

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 164/460 (35%), Gaps = 51/460 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVF 86
            +  D+RS+A  +AFFA      D   FI  A+++GA  V+V  +  +     S  + V 
Sbjct: 30  HLHADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQPEGFSGAINPSNMLAVP 89

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++++ G++               + ITG+ GKT+  + ++ AL+++    A IG+    
Sbjct: 90  ALNELAGSIASGW-YNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGTLGTG 148

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     IAV T
Sbjct: 149 LPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDIAVFT 206

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E   +AKA +F    +     +N DD+    L A +   G     ++
Sbjct: 207 NLTQDHLDYHQTFEAYEAAKARLFAW-PELRAAVINRDDAAGRRLLASTQ--GHARTIAY 263

Query: 251 GKS-----------KNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLM 298
           G              +A       +  +  +   +        EV    +G     N+L 
Sbjct: 264 GLDSGQGALQDAPQADALLLASNVRATATGTAFHLSTSDWGDAEVEVQTLGAFNVSNLLG 323

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            LG +       + A+  L+   P  GR +R      Q    L+   Y   P +++  + 
Sbjct: 324 VLGALLAADVPFEAALAELAQLEPVNGRMQRL-GGRLQNDEPLVVIDYAHTPDALEKTLE 382

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  +     G  I + G   +     +     +AE ++      V ++  +  +     
Sbjct: 383 ALRPMVTARGGELICMFGCGGDRDATKRPLMGAIAEKIA----DGVVVTSDNPRSEDPQS 438

Query: 414 ----LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
               +   +  +      E     +   I+S+  +  +V+
Sbjct: 439 IIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVL 478


>gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
 gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 481

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 153/433 (35%), Gaps = 49/433 (11%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           + +   +  + D  D     V   +  V  +   V S     +P+    ++L  + +   
Sbjct: 66  DVYIGHRAENTDQAD-----VVVVSSAVAGDNPEVVSARERRVPIVPRAEMLAEIMRYR- 119

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++   L       T+   G  N+      T A++  
Sbjct: 120 --------HGIAVAGTHGKTTTTSLIASVLGEAGLDPTFVIGGKLNS----AGTNAQLGG 167

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
              + + E   S    +        P I+V+T I   H+  +   +E++     +    L
Sbjct: 168 S-RYLVAEADESDASFLHLT-----PVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNL 221

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQL 276
              G   +  DD + + +  +      + I ++G    +AD++         ++   V+ 
Sbjct: 222 PFYGVAVMCVDDDYVQEIIPRIS----RAIITYGIDNPDADYRAENITSDGLKTRFLVRR 277

Query: 277 QGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            G    ++V     G H   N L T+ + +    D     + L+ F     R + Y    
Sbjct: 278 PGGRPDLQVELKMPGRHNVLNALATIAVATDEGVDDQAICRGLAGFAGVGRRFQVYGEYR 337

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P  ++A I    +  P    RRI +L         ++  + D   
Sbjct: 338 TPKAAATLVDDYGHHPTEVEAVIRAAREAWPQ---RRIVMLYQ-PHRYTRTRDLYEDFVR 393

Query: 395 VLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVD 443
           VLS          Y+     + G    AL  ++ +   V   + E    +   + + L D
Sbjct: 394 VLSEVDGLLLMDVYSAGEPAIPGADGRALCRSIRQRGKVEPVFVEDNREIESLLANVLQD 453

Query: 444 GDVVVVKSSNSCG 456
           GD+++ + +   G
Sbjct: 454 GDLLITQGAGDIG 466


>gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
          Length = 552

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 172/496 (34%), Gaps = 62/496 (12%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           P  T  +L   +   + G      V  +GI+ DSR++ P + + A+ G    G DF   A
Sbjct: 13  PATTLEELADQLGVDARGAETPAAVVLSGITHDSRAVRPGDVYAALPGARVHGADFSAQA 72

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
              GA  ++ +        +  +PV  V D  G + ++A             I ITG+ G
Sbjct: 73  ASLGAAAILTDPAGAGPALATGLPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSG 132

Query: 119 KTTTKEMLTIALSSIK-----------KTYACIGSYNNHIGVPL--TLARMPVDVDFGIF 165
           KTTT  ++   L + +                IG+    IG     +    P   D    
Sbjct: 133 KTTTAYLIEGGLRAAQEARAKETGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQAL 192

Query: 166 ELGMSHLG----EIRFLTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              M   G     +   +H +           +AV   ++P H+   S +E+   AKA++
Sbjct: 193 FAVMRERGVRALAMEVSSHALVLGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQL 252

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSW 271
           F    ++    +N+DD +   L  +S       + SF      +AD++       S  S 
Sbjct: 253 FTK-ARSKLGVVNHDDEYGRRLLTESEV----PVISFSAEGHPDADWRAEDVIVGSLDST 307

Query: 272 ME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V  +G+ +       G     N L  +  ++    D  TA   ++      GR +R 
Sbjct: 308 FTAVGPEGQRISARSPLAGPFNVANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERV 367

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               + G   L    Y     ++++ +  L +++   EGR   VLG     G+   +   
Sbjct: 368 ----DAGQPYLAVVDYAHKTDAVESVLRALRKVT---EGRLYIVLGC---GGDRDTTKRG 417

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            +    +      V  S              +LA    +P           D      ++
Sbjct: 418 PMGAAAARLADLAVLTSDNPRSEDPLAILSTMLAGAAEVPIHERGDVIIDADRAGAIAEA 477

Query: 440 SLV--DGDVVVV--KS 451
            +    GD V+V  K 
Sbjct: 478 VVRAEAGDTVLVAGKG 493


>gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
 gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
          Length = 488

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRGAVAIIAGKD--TAIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVR 183
           IG+                  P+ L R+  +     V     E     L + R     VR
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRL--DGVR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
                 T +   H+   + I+E   AK  +F  L   G    +  DD F      ++  L
Sbjct: 191 LAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQ-AVEAATL 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G+  N    L++ +    +  +EV++  +  E+     G     N L+  G+
Sbjct: 250 AGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +       A++AL++     GR        +     +    Y   P +++   +VL+ 
Sbjct: 309 AMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYV---DYAHKPEALE---NVLTS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P   GR I V G     G+  +     + E+ S      V ++  +  +        +
Sbjct: 363 VRPFTTGRVIVVFGC---GGDRDKGKRPIMGEIASRL-ADVVIVTDDNPRSEVPAQIRSE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +                 S +  GD +VV  K 
Sbjct: 419 IMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Leptospirillum sp. Group II '5-way CG']
          Length = 509

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 157/475 (33%), Gaps = 60/475 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G  P   +N ++ DSR +     F    G  +   +F+  A+ +GA  +V + +    I 
Sbjct: 23  GRFPDRVLN-LTDDSRQVEEGALFLIRPGEGF-RWEFVNEALDRGAFYLVADRNAFPEID 80

Query: 80  SLSIP------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           S                V  +   +G L          S   +I +TG+ GKTT+  +  
Sbjct: 81  SRPALSSRIRESAGLSLVENLPRSVGQLASSW-WGFPSSSLKVIGVTGTNGKTTSSFLTR 139

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSH 171
               +       IG+    +G   T A         I                 E+    
Sbjct: 140 SVCRAGGLPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVSMEVSSHA 199

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYD 228
           L + R    +    +   T +   HL     +E    AK ++       GT     ++  
Sbjct: 200 LDQDRLAGTI--FSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVAVVHTG 257

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +   L  +    G + + ++G+  +A  +              ++     M +     
Sbjct: 258 DEYGARLAKELERDG-RRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSIDSSLS 316

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G++  QN+L  +G    L    +   + +       GR +R       GF  ++D  Y  
Sbjct: 317 GHYNLQNILGAVGCGEALGLSTEKIAEGIHSLSGVPGRFERVDSP--AGFSVIVD--YAH 372

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              ++    ++LS + P   G+ I V G     G+  +     +  V    +   V  S 
Sbjct: 373 TDDALS---NLLSAVRPVTRGKVITVFGC---GGDRDRGKRPRMGNVAGRLSDFVVLTSD 426

Query: 409 ----FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  ++ D +   +       V  S+    +F  I+ +   GD VV+  K 
Sbjct: 427 NPRTENPESILDEIEPGLRETGTPYVRVSDRKSAIFDAIRRA-RSGDAVVIAGKG 480


>gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf.
           saccharolyticum K10]
          Length = 487

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 161/480 (33%), Gaps = 76/480 (15%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ ++   +          +  DSR       F  +KG + D HDFI   ++ G  ++VV
Sbjct: 6   LKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVV 65

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTI 128
             ++        + V  V++   AL  L+ A       K   I +TG+ GKTTT  M+  
Sbjct: 66  EREVSEIPED--VTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKTTTTYMIKS 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHL 172
            L +  K    IG+    IG      +                     ++ + E+     
Sbjct: 124 ILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEVSSQSY 183

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              R     +     +   I+  H+     +  EE    K ++   L+   T  +N DD 
Sbjct: 184 LMHR--VDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYKKQL---LKNCKTAIVNEDDE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHG 287
            FE +   + A     I++F   + ADF+    +  S   ++ +  Q      MEV  + 
Sbjct: 239 HFEEIIRGAQA----KIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNV 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N L ++ + S L          L           R          T+I + Y 
Sbjct: 295 PGRFNAANALASVALCSFLDLPKAKVAHGLEHLKIDG----RMEIVYKSSKMTVIVD-YA 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG-----------DMCEMGELSQSF-------- 388
            N  SM++ +  L    P    R + V G            M E+G     F        
Sbjct: 350 HNAVSMESLLKTLRDYKPK---RLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNS 406

Query: 389 -HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + D+ ++L+   +     SG ++                        F  S   DGD++
Sbjct: 407 RYEDVNDILTDIKVGLSMTSGTYIE--------------IPDRRRAIEFAISHAHDGDMI 452


>gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 488

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/471 (20%), Positives = 172/471 (36%), Gaps = 50/471 (10%)

Query: 17  HSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H +GI  +G VN   +++DSR+      F AIKG   DG  +I  A+Q GA  V+   D 
Sbjct: 6   HLLGIDIEGDVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADS 65

Query: 75  VASIGSLS----IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTI 128
                 +     +P+     +   L++LA         + T++ +TG+ GKTTT ++L  
Sbjct: 66  AQQHLQIHYEQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQ 125

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELGMSHL 172
               +  T A +G+  N +   +  A                      DF   E+     
Sbjct: 126 WTQLLGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSH-- 183

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G ++     V    AV T ++  HL     +E  A+AK  +F  L+      ++ DD   
Sbjct: 184 GLVQHRVEGVHFSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQ-IIDADDPIG 242

Query: 233 -ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L+   +A+ + T   F   +    +        + + ++        E+    IG  
Sbjct: 243 AAWLRELPNAVAVSTNPDFSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAF 302

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L+    +  L   +   + +++      GR +           T+I + Y   P 
Sbjct: 303 NVSNLLLVTATLLTLGYSLSELVNSVNKLTGVCGRMEMLTATHKP---TVIVD-YAHTPD 358

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           +++ A+        H  G+   + G   +     +     +AE LS     HV  +    
Sbjct: 359 ALEKALQA---ARLHCHGKLWCIFGCGGDRDRGKRPLMAGIAEKLS----DHVIATDDNP 411

Query: 409 ---FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               H   + D L   I+   V      +        S V+ DV+++  K 
Sbjct: 412 RTEDHTQIMADILKGFINPQAVQVIHQREEAIATAIKSAVENDVILIAGKG 462


>gi|77460893|ref|YP_350400.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
 gi|109892724|sp|Q3K745|MURC_PSEPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77384896|gb|ABA76409.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 486

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 158/431 (36%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQKGAGL--VVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +  A    +VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENAAAADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q   Q++  V   
Sbjct: 219 PFYGLAVMCLDDPVVREIL----PLVKRPTVTYGFSEDADVRAINVRQQGMQTFFTVLRP 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I  +    P    R + V          ++  + D   VL
Sbjct: 335 GGNVMLVDDYGHHPTEVAAVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVNVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
 gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 156/457 (34%), Gaps = 46/457 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82
            +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G +    
Sbjct: 30  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRA 89

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +G
Sbjct: 90  GVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 149

Query: 142 SYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L                 R   +       L  S  G ++     +     
Sbjct: 150 TTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
           V + ++  HL     +E  A+AK  +F          +N DD+      K    A+G+  
Sbjct: 210 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 247 IYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +    K   A     R+         +  +      E+    IG   A N+L+ L  +  
Sbjct: 269 V---AKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 325

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +    +       P  GR + ++              Y   P +++ A+  L     
Sbjct: 326 LGFEKSALLATAPKLRPVLGRMELFQREQKAKMVV----DYAHTPDALEKALRALR---V 378

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
           H  G+  A++G   +     +     +AE  +      V L+  +  +         +  
Sbjct: 379 HCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFA----DRVILTDDNPRSESPQAIVADMVA 434

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L      H          +        D++++  K 
Sbjct: 435 GLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|188997128|ref|YP_001931379.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254766029|sp|B2VA52|MURC_SULSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188932195|gb|ACD66825.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 454

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 142/401 (35%), Gaps = 45/401 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L IP     ++L  L +             IAI GS GKTTT  M
Sbjct: 73  SAVKPDNPEMIKAKQLGIPTIPRGEMLAELMRFKYG---------IAIAGSHGKTTTTSM 123

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L          IG      G    L R       G F +  S   +  FL   + P
Sbjct: 124 VGTVLGKTGFDPTVVIGGKLEAYGSNAKLGR-------GEFLVTESDESDGSFL--KLTP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I  I  I   H+  +  +E+I  A       +   G   +N DD   + +         
Sbjct: 175 TIVSINNIDLEHIGFYKDLEDIKKAFVAFANKVPFYGAAAVNIDDENVKSILPYIE---- 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG S++AD +    +  + +   +V   G   E+     G H   N L T+ I +
Sbjct: 231 RKVIKFGFSEDADIRAYDVRLENGRYKFKVNDFG---EIHLSVPGIHNVYNALATIAICN 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L+       ++L  F   +   +R+    +     +  + Y  +P  +KA +S      
Sbjct: 288 ELSVPFCVIKESLENFKNAK---RRFEIKYSNDIIVI--DDYAHHPTELKATLSAARDY- 341

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA------LK 415
              + R IAV            +   + A+   + +I   + V+ +G   +       L 
Sbjct: 342 -FKDRRIIAVF--QPHRYSRLNALFEEFAKAFDIPDITIVTEVYSAGESPIENVSGEKLA 398

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + +     +V+Y   ++     +++ +  GDV++   + S 
Sbjct: 399 EKIREYGNNVYYVSNLEEAENLLKNIIQKGDVILTLGAGSI 439


>gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
          Length = 511

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 155/478 (32%), Gaps = 44/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS  +     F A+ G    G  F     + GA
Sbjct: 4   SLDTLAQLSGGRVIGDA-SVEVSACGLDSSRLPEGALFAALPGTRVHGAQFARD-TKAGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            L       + +    + P+  V+D+   L  ++           T+I +TG+ GKTTT 
Sbjct: 62  VLTDAAGLDLLTKDQETRPIVVVEDIRAVLGPISAEIYGHPTRDLTVIGVTGTSGKTTTS 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHI---GVPLTL------------ARMPVD-VDFGIFEL 167
            +L   L     +   IG+    I    VP +L            ARM  + V   + E+
Sbjct: 122 YLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEV 181

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R      R  +   T ++  HL     +E+   AKA++F G +      L  
Sbjct: 182 SSHALELGR--VRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAERAVLCI 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHH 286
           DD + E ++  + + G        +   A    R+    +     + +   G        
Sbjct: 240 DDEWGERMRGVAKSAGHPVTTVATQGAAATISARQTATEATGAQEVALNYDGADFTFRLP 299

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N  + LG+ + +  D    +   S        G+  R    Q F  ++D  Y
Sbjct: 300 LPGEFNIANACLALGMATAVGEDPAEFL---SGVEKVAVPGRMERIDRGQDFVAVVD--Y 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              PA++ A +  L        GR   V+G     G+   S    +    +      V  
Sbjct: 355 AHKPAAIAAVLDTLRGQLEGTTGRVGIVVGA---GGDRDSSKRPIMGAAAASRADLTVVT 411

Query: 407 SG----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      ++ A+            +    +       +      GD V+V  K 
Sbjct: 412 DDNPRSEDPATIRAAVVEGARDAAPEGDIREVGSRARAIDEVVDWAEPGDAVIVVGKG 469


>gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
 gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
          Length = 464

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 159/419 (37%), Gaps = 50/419 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +     +    ++P+     +LG + K             +A+ G+ GKTTT  M
Sbjct: 79  AAVHPDNPEFMAAKEANLPMLTRAQLLGQIMKQYKL--------PVAVAGTHGKTTTTSM 130

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L+  L  +    T   IG     IG  +           G  E  ++   E         
Sbjct: 131 LSKILLEADTDPTL-SIGGIFKDIGGNI---------RVGQSEYFVTEACEYTNSFLSFF 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I++I+ I   HL  F  +++I  +  +  + L   GT+ +N D    E +        
Sbjct: 181 PKISIISNIDADHLDFFKDLDDIRHSFRKFAQLLPADGTLVINGDIDNVEEITDSLPC-- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLG 301
             TI ++G   + D+         + +      L  G+++++     G H   N L ++ 
Sbjct: 239 --TIITYGSRDSFDYYPTDITYNEQGNPSFTAHLPGGETLDISLAVPGIHNVYNALASIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + ++     D  + ALS F    G  +R+      G  T+ID+ Y  +P  +KA ++   
Sbjct: 297 VANLFGISKDNIVAALSAFG---GTSRRFEYKGEIGGVTIIDD-YAHHPTEIKATLTAAQ 352

Query: 362 Q---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A+L +  +   LS + H+ LA++ +      +   G    
Sbjct: 353 NYPHNKIWCVFQPHTYTRTKALLDEFAD--ALSLADHVVLADIYAARETDTL---GISSR 407

Query: 413 ALKDAL-PRSIHVHYSETMD---GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            L+D +       +Y  T++    +  F+  +   GD+++   +      ++ + LL +
Sbjct: 408 TLRDKIVANGHECNYFPTIENFGEIEKFLLQNCTKGDLLITMGAGDV--VKIGDELLGK 464


>gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM
           17629]
          Length = 490

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 157/479 (32%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       ++ +  DSR +     F  I G   D HDFI   V+KG
Sbjct: 1   MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+    G   +    VDD   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVTPIEG---VTYIKVDDTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLT---------LARMPVDVDFGIFELG 168
             M+   L S       IG+      +  I    T         L +  VD       + 
Sbjct: 118 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +          I V T + P H+         +    K+ +F           N
Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADYMHCKSLLFRQCRLG---IFN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD   E +           + ++G     +      +   E   + ++         +V
Sbjct: 235 GDDEHLEGVMKGHTC----QVETYGYKSTNNLVAENVELKKEHGALGIKYHVSGLLDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  + I      D           H    +G+     + + +  +ID
Sbjct: 291 EVNVPGKFSVYNSLTAIAICHHFNVDKKAI---GEALHHVSVKGRIEIVPVTKRYTLMID 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  ++++ ++ L +  P   GR + + G     G  ++S   ++ EV S      
Sbjct: 348 --YAHNAMALESLLTTLKEYEP---GRLVCLFGC---GGNRAKSRRYEMGEVSSRLADLT 399

Query: 404 VWLSG-----FHVLALKDALP--RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S        +  + D L         Y           +   +  DGD++V+  K 
Sbjct: 400 VVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 458


>gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
 gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
          Length = 495

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 155/470 (32%), Gaps = 57/470 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +   + +S DSR     + F  +KG   D HD I   ++KG  + VV  ++     
Sbjct: 16  GDGEREEFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVEKNLPDLPK 75

Query: 80  SLS----IPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            +     + +  V++   AL +L+         +  +I ITG+ GKTTT  M+   L+  
Sbjct: 76  EMQDREDLCIVQVENGRKALAELSAFYFSYPSKEMLMIGITGTKGKTTTASMVRAILTEA 135

Query: 134 KKTYACIGSYN---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
                 IG+                     +  T  +M       +  +  S  G     
Sbjct: 136 GYNCGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVV-MEASSQGFKMHR 194

Query: 179 THLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           T  +     + T I   H+         E    K+ IF    ++ T  +N D  F E   
Sbjct: 195 TDGILFDYGIFTNIEEDHIGENEHKDFAEYKYYKSRIF---TQSKTGLVNLDADFSEEFM 251

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             +        +SF   K ADF   +     +          +   +  E+ +H  G + 
Sbjct: 252 ENAEC----PCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGEEDWEIWNHLPGRYN 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + + S+L    +    AL           R    L +G +T++ + Y  N   
Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQVNG----RMEVVLQRGGYTVLVD-YAHNAMG 362

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
           MK  +  L    P    R I V G     G  ++     + EV        +  +     
Sbjct: 363 MKNLLETLKAYKPK---RLIVVFGC---GGNRAKERRYGMGEVAGEMADFTILTADNSRY 416

Query: 409 -FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + D       ++ +    E       +      +GD++ V  K 
Sbjct: 417 EKTMDIISDIESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLIAVIGKG 466


>gi|261855072|ref|YP_003262355.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
 gi|261835541|gb|ACX95308.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
          Length = 491

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 142/420 (33%), Gaps = 45/420 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   +A+  +  +P+    ++L  L +  +          +A+ G+ GKTTT  +L
Sbjct: 93  AVKADNPELAAAQAKRLPIVRRAEMLAELMRFRIG---------LAVAGTHGKTTTTSLL 143

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+           ++    +   L     +   G  E  ++   E       ++PH+
Sbjct: 144 AAILAEAG--------WDPTYVIGGKLLSSSSNARLGRGEYLVAEADESDASFLHLQPHV 195

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   HL  +    E +     E    L   G   L  DD     + A+      +
Sbjct: 196 AIVTNIDADHLETYDGNFERLVDHFIEFLHNLPFYGLAVLCADDPVAAGITARV----GR 251

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G  + AD +          S   V L  ++  +      G H   N L  + +  
Sbjct: 252 QVLTYGIDQPADVRATDVYSDGFGSRFVVNLPNQTQFDCRLAMPGRHNVLNALAAITVAQ 311

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   V    +AL+ F     R +R      +G    + + Y  +P  ++A +  +    
Sbjct: 312 DLGVPVAAIQQALTSFQGVGRRLERRGALAIKGKKLPLIDDYGHHPREVEATLQAVRAAW 371

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALK 415
           P    R + +          ++    D   VLS          Y      ++G    +L 
Sbjct: 372 PDV--RLVVIF--QPHRFSRTRDLFEDFVRVLSTVDHLILLDVYAAGEAPIAGADGRSLA 427

Query: 416 DALPRSIHVH--YSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLEEF 468
            A+     V   +    D     +   + + +     +V+   + + G   L  LLL  +
Sbjct: 428 RAIRNRGQVDPVFVVGADEAAAVLPDIIPENELDQPMLVLTLGAGNVG--SLPALLLNRY 485


>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
          Length = 487

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 176/488 (36%), Gaps = 68/488 (13%)

Query: 5   WTFHDL-------LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            T  +L       ++ I+ H  G      V GIS +S+ I     FFAIKG   DGH+FI
Sbjct: 1   MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITG 115
             A +  A   VV  D+        +    V   L AL +  L        K  + ++TG
Sbjct: 61  QEAFKNKAIGAVVEKDVD------YVNTIKVRSTLQALRETSLVFYDYPFKKLFLGSVTG 114

Query: 116 SVGKTTTKEMLTIALSS-IKKTYA--CIGSYNNHIGVPLTLARMPV-------------- 158
           + GK+T   +L+ A++  + K++A   +G  +    +  T    P               
Sbjct: 115 TNGKSTITWILSHAVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQL 174

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EG 216
           D+ +G  E+    L   R   H ++   A+ T +A  H+     +E+    K  +F    
Sbjct: 175 DMKYGFLEVSSHALKLGRL--HGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTY 232

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQ 275
           L++   + +N DD +   L    + +      SF  +++ A F  + ++       + V+
Sbjct: 233 LKENAFVVINIDDLYGINLY---NGIKDFRKASFSLENEKASFFGK-FEPVDRGVCLLVE 288

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            Q    +V     G   A N+L     + ++  + D    A        G   R  C   
Sbjct: 289 GQ----KVFAPIYGRFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYG---RLECVQT 341

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           + F   ID  Y   P  ++  +  L  +    E + I V G     G   +     +  +
Sbjct: 342 KPFKIWID--YAHTPDGLEKVLKSLRDM---VEKKIILVFGA---GGNRDKGKRPIMGRI 393

Query: 396 LSLYNISHVWLSG----FHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGD 445
            + ++   +  S        +++ D +       ++ +                   D D
Sbjct: 394 AAQFSDYTIITSDNPRYEDPMSIIDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDND 453

Query: 446 VVVV--KS 451
            +++  K 
Sbjct: 454 AIIIAGKG 461


>gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
 gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
          Length = 485

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 148/455 (32%), Gaps = 44/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G+++DSR + P + FFA+ G   DG  FI  A+        V      +     +
Sbjct: 19  ELAVTGLAVDSREVKPGDLFFALAGTKTDGARFIDAAI----AAGAVAVVGDHAPAGACV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P     +   AL   A     R  ATI A+TG+ GKT+           +    A IG+ 
Sbjct: 75  PSVATSNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGTI 134

Query: 144 N-----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P++L R     +   V     E     L + R     VR   A
Sbjct: 135 GVVAPSRAVYGSVTTPDPISLHRELDQLVGEGVTHLALEASSHGLDQYRL--DGVRVRAA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIK- 245
             T ++  H+     +      K  +F  L E  G   ++ D      +   + A  ++ 
Sbjct: 193 GFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGVAVISADHDCSGTVIEAASARNVRI 252

Query: 246 -TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G   ++  +L           + ++  G+   +    +G    +N L++ G+V 
Sbjct: 253 MRVGRRGDGTHSGIRLADAVIEGFAQRVTLEHAGRERIIRLPLVGEFQIENALVSAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D D    AL      +G   R      +    +  + Y   P ++  A+  L    
Sbjct: 313 GTGGDADQVFAALEHLEGAKG---RLELVGERNGAPVFVD-YAHKPDALAKALQALR--- 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDAL 418
           P+   + + V G   +     +    ++A      N   V ++  +  +          L
Sbjct: 366 PYASRKLVVVFGAGGDRDAGKRPLMGEVA----AANADVVIVTDDNPRSENPAAIRAAIL 421

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                   L  GD +++  K 
Sbjct: 422 AAATGAREIGDRAEAIRTAIVGLQPGDALLIAGKG 456


>gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
 gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
          Length = 567

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 139/370 (37%), Gaps = 31/370 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +PV
Sbjct: 85  PVTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGADRAAATGLPV 144

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D  G + +LA     R       + ITG+ GKTTT  ++   L    ++   +G+ 
Sbjct: 145 LAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGLVGTV 204

Query: 144 NNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFLTHLV--------RPHIAVI 189
              IG     +    P   D       M   G     +   +H +           +AV 
Sbjct: 205 EMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVFDVAVF 264

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++P H+   S +E+   AKA +F    +     +N+DD +   L  ++       + +
Sbjct: 265 NNLSPEHMEFHSDMEDYFQAKARLFTE-RRARLGVVNFDDEYGRRLAKEASI----PVVT 319

Query: 250 FGK--SKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           F       AD++          S + +   +G+ +       G     N +  +  ++  
Sbjct: 320 FSAAGDPAADWRAEDVVFGHMDSTLTLVGPEGQRVRATAPLPGPFNVANTVAAIVTLAAA 379

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  TA   ++      GR +R     + G   L    Y     ++++ +  L +++  
Sbjct: 380 GLDPQTAADGVAAVPGVPGRLERV----DAGQPYLAVVDYAHKTDAVESVLRALREVTT- 434

Query: 367 GEGRRIAVLG 376
             G+   VLG
Sbjct: 435 --GKLHIVLG 442


>gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
          Length = 561

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 152/400 (38%), Gaps = 32/400 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G S     +  V GI+ DSR++ P + + A+ G    G DF   A   GA
Sbjct: 61  SLGELAARL-GVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGA 119

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
             V+ +        +  +PV   ++    + +LA             I ITG+ GKTTT 
Sbjct: 120 AAVLTDPAGADRAAATGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTTTV 179

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRF 177
            ++   L +  +    +G+    IG     +    P   D       M   G     +  
Sbjct: 180 YLMEGGLRAAGRATGLVGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAMEV 239

Query: 178 LTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            +H +           +AV   ++P H+   SG+E+   AKA++F    ++    +N DD
Sbjct: 240 SSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTP-ARSRRGVVNLDD 298

Query: 230 SFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHH 286
           ++   L A++       + +F      +AD++    +     S + +   G   +     
Sbjct: 299 AYGRRLAAEATV----PVTTFSAEGHPDADWRAEDVEVGPLGSTLTLVGPGGVRVSARAP 354

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N +  +  ++    D  TA   ++      GR +R     ++G   L    Y
Sbjct: 355 LPGPFNVANTVAAVVALATAGVDPQTAADGVAAVPGVPGRLERV----DEGQPYLAVVDY 410

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                ++ + +  L +++   EGR   VLG   +  E  +
Sbjct: 411 AHKTDAVDSVLRSLRKVT---EGRLHIVLGCGGDRDETKR 447


>gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
 gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
          Length = 520

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 165/480 (34%), Gaps = 50/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+A  +AFFA      D   FI  A+++GA  
Sbjct: 12  RQIADALSWLHAHVQPDA---HLHADTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEML 126
           V+V  +        S+          A    +   R  S A + + ITG+ GKT+  + +
Sbjct: 69  VLVQPEGFTGKLDASVTHAVPALNELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWV 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGMS 170
             ALS+     A +G+        L               +LA++       +  E+   
Sbjct: 129 AAALSARGTRCAIVGTLGTGFVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSH 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L + R   +     IAV T +   HL      E   +AKA +F    +     +N DD+
Sbjct: 189 ALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFEAYETAKARLFAW-PELRAAVINRDDA 245

Query: 231 FFELLKAKSHALGIKTIYSF-GKSKNAD----------FQLRKWKQCSEQSWMEVQL-QG 278
               L A +        Y   G+  +AD                +  +  +   +     
Sbjct: 246 AGRRLLASTRGHARTIAYGIEGEHGDADAKGAHQADAWLAASNVRATATGTAFHLSTSDW 305

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + +V    +G     N+L  LG++         A+  L+   P  GR +R      Q  
Sbjct: 306 GNADVEVQTLGLFNVSNLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRL-GGRLQND 364

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+   Y   P +++  +  L  I+    G  + + G   +     +     +AE L+ 
Sbjct: 365 EPLVVIDYAHTPDALEKTLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLA- 423

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
               +V ++  +  +         +   +  +      E     +   I+ +  +  +V+
Sbjct: 424 ---DNVVVTSDNPRSEDPLSIIEQIAAGMQDASKARRVEDRASAILQAIRGAAREDVIVL 480


>gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf-5]
 gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 160/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQKGAGL--VVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +  A    +VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENAANADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     +A+ G+ GKTTT  +L    ++     T+   G  N       T A++  
Sbjct: 117 --------HGVAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     +    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVDFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +  +      +   ++G S+ AD +    +Q   Q++  V  +
Sbjct: 219 PFYGLAVMCLDDPVVREILPQVK----RPTVTYGFSEEADVRAINVRQQGMQTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATICIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I  +    P    R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPTEVAAVIKAVRGGWPE--RRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
          Length = 492

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 167/476 (35%), Gaps = 45/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++ +    +       +  I  DSR  AP   F  I G   D H F      KG
Sbjct: 1   MKLEQLMEGVPFTLVQGSLGTEIADIIYDSRKAAPGLLFVCIVGTQRDSHTFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
              +V+  D+  S     + V  V+    A+  ++         + T+I +TG+ GKTTT
Sbjct: 61  VSALVIQHDIDLSTLP-GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L +  +    IG+   +                      R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      V   + V T ++P H+        EE  S K ++F   ++     +N
Sbjct: 180 VSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF---KRCDVGVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEV 283
            DD     L           + ++G+ + AD++   +K      ++ V   + GK  M+V
Sbjct: 237 IDDENTAALLEGHTC----KLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDV 292

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  L +  +L                   +G+     +++ F  L+D
Sbjct: 293 KVNMPGEFSVYNALAALAVGKVLGLPDAAIHDG---LGKCVVKGRVELVPISKKFTILLD 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
             Y  N  S ++ ++ L    PH   R + V G      +L +    ++   ++ ++I  
Sbjct: 350 --YAHNEVSTESLLTTLRAYKPH---RLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404

Query: 402 ---SHVWLSGFHVLALKDALPRSI-HVHYSETMD--GLFLFIQSSLVDGDVVVVKS 451
              +        +  +++ + +      + E  D      +      +GD++ V  
Sbjct: 405 EDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIG 460


>gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
          Length = 488

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 162/480 (33%), Gaps = 54/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T HD   A QG  +  V QG V+ ++ DSR       F A+ G   DG  ++  A++KG
Sbjct: 3   MTLHD-NAAFQG-LLDAVRQGGVD-VAADSRRATSGGVFVAMAGSRDDGARYVADALEKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
              VV         G  +  +  VDD   AL  LA A          ++A+TG+ GKTT 
Sbjct: 60  VAFVVAAPGHDLPAG-TTARLVAVDDPQAALGALAAARFGTETMAMPVVAVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             ++     +   T   +G+        +  A +                       + E
Sbjct: 119 SYLIERLAQAAGHTVGVLGTVAYRWPGVVHDATLTTPDCLAIHENLAAMARSGCTLAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
                L + R     +    A  T +   HL     +     AKA++F   L +  T   
Sbjct: 179 ASSHALDQDRL--AGLSFAAAAFTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAVF 236

Query: 226 NYDDSFF-ELLKAKSHALGIKTIY---SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           N+DD++  +LL     A+G         FG+  +   Q        E   +       S 
Sbjct: 237 NFDDAWGLKLLHEFPQAIGYGLTVPPTGFGRLLSGHVQ----HHGREGQDILAAYGDDSY 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H AQN+L   G+   L    +T     ++       G+  R     G    
Sbjct: 293 AVATPLPGRHNAQNVLAACGVALALGWPAETFA---ALADCHGAPGRLERIPNPSGRAVF 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y   P +++  +S   + +    GR   V G     G   ++    +   ++    
Sbjct: 350 VD--YAHTPDALENVLSAAREFTA---GRLFVVFGC---GGNRDRAKRPLMGAAVARLAD 401

Query: 402 SHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V  S        LA+ +     L ++                 S +   DV+V+  K 
Sbjct: 402 VAVLTSDNPRHEDPLAIIEDVKPGLKKARRAILEPDRRRAIELALSEMRPEDVLVIAGKG 461


>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
 gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
          Length = 734

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 163/451 (36%), Gaps = 24/451 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L + +    +       +   +   + I P  A+FA            + A +K
Sbjct: 293 ITTVGKLCEILNAE-LRNAADVPITSFAFGKQKIKPGCAYFAADKET------AVTAFEK 345

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +++    +        IP   V ++  AL++ AV  +       +A+  S  K    
Sbjct: 346 GAAVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKINPL 399

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   LSS  +T   I   NN+  +   +       +  +  +   + G +  ++    
Sbjct: 400 SMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTETAVINVSCVNGGNVERVSQTAN 459

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A++T+   +         E+   K ++  G+ ++G + +N DD     +        
Sbjct: 460 FDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQD-- 517

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I + G     AD+     +    +   ++     +  +  +    H     L T  +
Sbjct: 518 ---IITIGVDNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATFAL 574

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+       I A+  + P  G         N+    +I +  N    S+ AA+  L  
Sbjct: 575 GEIMGIPPKQIIPAIEKYRPSTG----LTTVRNERGIYVISDFENEAVESVGAALKELCT 630

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRS 421
           +    + RRIAVL ++ +  E     +  +  +++  +++     G     L K A  +S
Sbjct: 631 MQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVNITVCYGETAAELMKTADLKS 690

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             V    T   L  F++ +L D D V+ K S
Sbjct: 691 KFVIKLNTRQALTEFLKLNLRDNDAVLFKGS 721


>gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501]
 gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501]
 gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 485

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 157/413 (38%), Gaps = 44/413 (10%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA ++VV++ + ++   +       IPV    ++L  L +             IA+ G+
Sbjct: 76  AGADVLVVSSAINSANPEVALALEQRIPVVPRAEMLAELMRYR---------HGIAVAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +L    ++              IG  LT A     +    + +  +   +  
Sbjct: 127 HGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGSSRYLIAEADESDAS 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           FL   ++P +AV+T I   H+S +     ++     E    L   G   L  DD     +
Sbjct: 181 FL--HLQPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLAVLCVDDPVVREI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQ 294
             +      +   ++G S++AD +    +Q   +++  V   G + ++V  H  G H   
Sbjct: 239 IPQI----GRPTTTYGFSEDADVRAINVRQEGMRTYFTVLRDGCEPLDVSVHMPGNHNVL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L T+ I +    D +  ++ L+ F     R + Y      G   ++ + Y  +P  + 
Sbjct: 295 NALATIAIATDEGIDDEAIVQGLAEFAGVGRRFQVYGNLPVDGGSVMLVDDYGHHPREVA 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV 411
           A I  +    P    R + V          ++  + D  +VL   N+     V+ +G   
Sbjct: 355 AVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVQVLGESNVLLLMEVYPAGEEP 410

Query: 412 LALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   D+  L  SI         Y E    L   ++  L  GD+++ + +   G
Sbjct: 411 IPGADSRQLCHSIRQRGQLDPIYVERGVDLAPLVKPLLRAGDILLCQGAGDIG 463


>gi|312959058|ref|ZP_07773577.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
 gi|311286828|gb|EFQ65390.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
          Length = 481

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 47/425 (11%)

Query: 51  YDGHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           + GH    +A +         V  +   VA+     IPV    ++L  L +         
Sbjct: 65  FIGHR-AENAAEADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR------- 116

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++    ++     T+   G  N       T A++     + I
Sbjct: 117 --HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGTS-RYLI 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      ++P +AV+T I   H++ +     ++     E    L   G  
Sbjct: 170 AEADESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLA 224

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
            +  DD     +  +      +   ++G S++AD +    +Q   Q++  V    +  ++
Sbjct: 225 VVCLDDPVVREILPQVK----RPTVTYGFSEDADVRAINVRQEGMQTYFTVLRPDREPLD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N L T+ I +      +  ++ LS F     R + Y      G   ++
Sbjct: 281 VSVNMPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQLPVDGGDVML 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y  +P  + A I  +    P    R + V          ++  + D   VL+  N+ 
Sbjct: 341 VDDYGHHPTEVAAVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVNVLADANVL 396

Query: 402 --SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
               V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + 
Sbjct: 397 LLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPIVKPLLRAGDILLCQG 456

Query: 452 SNSCG 456
           +   G
Sbjct: 457 AGDIG 461


>gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
 gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
          Length = 486

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 140/401 (34%), Gaps = 40/401 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +  S  IPV    ++L  L +             IA+ G+ GKTTT  ++T   S     
Sbjct: 100 AARSARIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +                I E   S    +      ++P ++++T I   H
Sbjct: 151 ---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADH 202

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E +     +    L   G   +  DD     L  K      + + ++G S +
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCVDDPVVRELIPKIS----RQVITYGFSDD 258

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q  +Q    V  QGK  +++  +  G H A N    + + +      +  +
Sbjct: 259 ADVRIANYRQDGQQGKFTVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDIADEAIL 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            A++       R              ++ + Y  +P  +   I      +   + R + +
Sbjct: 319 SAMAGTQGTGRRFDHLGEFDTGNGQAMLVDDYGHHPTEVDVTIQAAR--NGWEDKRLVMI 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH---- 425
                     ++  + D A VL   ++     V+ +G   +A  D  AL R+I       
Sbjct: 377 F--QPHRYSRTRDLYDDFANVLEQVDVLIMLDVYSAGEKPIAGADGRALCRTIRSRGKLD 434

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 435 PIFVPESKALPAVLANVLQDGDLVLTQGAGDVG--KVAKQL 473


>gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
 gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
          Length = 469

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 146/421 (34%), Gaps = 45/421 (10%)

Query: 56  FILHAVQ--KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I H ++  KGA +VV       N   + +   L IPV     +L  L +          
Sbjct: 64  YIGHRLENIKGADVVVRSSAVDFNNPEIVAARELMIPVIPRAAMLAELMRFR-------- 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  +++  L+         G  +    +   L     +   G    
Sbjct: 116 -HGIAIAGTHGKTTTTSLVSSLLAE--------GGLDPSFVIGGKLNSCGANAQLGKSAY 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
            +    E       ++P +AV+T I   H+  +    E++ +   E    L   G   + 
Sbjct: 167 FVVEADESDASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVC 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVV 284
            +D     +         +   ++G  + A ++   W Q    S   V      K + + 
Sbjct: 227 LEDEEICRILPAIQ----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQ 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L ++ I + L  D D+ ++ L  F     R +       +    +I +
Sbjct: 283 FQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIVD 342

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------ 398
            Y  +P  + + I    ++ P    R + V          +QS H    + LSL      
Sbjct: 343 DYGHHPQEILSTIDAFRRVWPE--RRLVHVF--QPHRYTRTQSLHRQFVDALSLSDELLL 398

Query: 399 ---YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              Y      + G     L + +          +   L   +   + DGDV++++ + S 
Sbjct: 399 MDIYAAGETAIPGVTSENLANEIRSRDKRVTIVSEQSLKATLDEFIKDGDVILMQGAGSI 458

Query: 456 G 456
           G
Sbjct: 459 G 459


>gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
 gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
          Length = 495

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 165/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----GPWVPGAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             VV   +  A+ G +     +PV  +  +   L+ LA     +   K T+I +TG+ GK
Sbjct: 61  AAVVAEAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIF 165
           TTT ++L    + + +T A +G+  N +   L+              L     +    + 
Sbjct: 121 TTTTQLLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLT 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     ++   SAK  +F    + G   L
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSE-HQVGQAIL 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A+     +                 +    +     + +       + E
Sbjct: 240 NADDEVGRRWLARLPD-AVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFSSSWGNGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+++ L  +  L   + T I       P  G   R       G  T++
Sbjct: 299 INSPLMGAFNVSNLMLALATLLSLDYPLATLINVAPQLQPVNG---RMEVFSAAGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H +G+   + G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALEA---ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQYA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L                          D+V+V  K 
Sbjct: 408 VVVITDDNPRSEDPQAIVNDILTGLLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKG 467


>gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 461

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 145/400 (36%), Gaps = 39/400 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +   L IPV    ++L  L          +K   IAI G+ GKTTT  M
Sbjct: 73  SAIPPDNPEIQAAKRLGIPVIKRGEMLALL---------SNKYRGIAIAGAHGKTTTTSM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ L             +    +   + R  V+   G  EL ++   E       + PH
Sbjct: 124 ISLVLEDNG--------LDPTFIIGGQMQRSLVNAKLGRGELFVAEADESDASFLRLHPH 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL  +   E I SA  +    +   G   L   D F   LK KS A    
Sbjct: 176 VAVVTNVEDDHLDYYQSEENIRSAFQQFVNQVLPEGFAVLFSGDRFLAGLKQKSRA---- 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +  +G   N+D+  R+ + C   S  +   +G+ + +V     G H   N +  + +  
Sbjct: 232 RLVYYGFDDNSDYFCREIRACGIGSAFKAYCRGQMLGDVYLKVPGIHNVLNAMAAIAVGC 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +   +AL  F    G  +R+         T+ID+ Y  +P  +KA I    Q  
Sbjct: 292 EVGVNFEGITRALGGFL---GAKRRFEVVGKLNGITVIDD-YAHHPTEIKATILAARQF- 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHI--------DLAEVLSLYNISHVWLSGFHVLAL-K 415
                R I +              H         D+  +  +Y    V + G     + K
Sbjct: 347 --HRSRLIVIF-QPHRYTRTKLLGHQFGPAFQGSDMVIITDVYGAGEVPIPGVTGELIYK 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            A+    +  Y    + +  ++   L   D+V+   +   
Sbjct: 404 SAVAEGCNAVYIPAKNEVVDYVAKQLKSDDLVITMGAGDI 443


>gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
 gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
          Length = 487

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 161/480 (33%), Gaps = 76/480 (15%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ ++   +          +  DSR       F  +KG + D HDFI   ++ G  ++VV
Sbjct: 6   LKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVV 65

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTI 128
             ++        + V  V++   AL  L+ A       K   I +TG+ GKTTT  M+  
Sbjct: 66  EREVSEIPED--VTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKTTTTYMIKS 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHL 172
            L +  K    IG+    IG      +                     ++ + E+     
Sbjct: 124 ILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEVSSQSY 183

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              R     +     +   I+  H+     +  EE    K ++   L+   T  +N DD 
Sbjct: 184 LMHR--VDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYKKQL---LKNCKTAIVNEDDE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHG 287
            FE +   + A     I++F   + ADF+    +  S   ++ +  Q      MEV  + 
Sbjct: 239 HFEEIIRGAQA----KIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNV 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N L ++ + S L          L           R          T+I + Y 
Sbjct: 295 PGRFNAANALASVALCSFLDLPKPKVAHGLEHLKIDG----RMEIVYKSSKMTVIVD-YA 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG-----------DMCEMGELSQSF-------- 388
            N  SM++ +  L    P    R + V G            M E+G     F        
Sbjct: 350 HNAVSMESLLKTLRDYKPK---RLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNS 406

Query: 389 -HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + D+ ++L+   +     SG ++                        F  S   DGD++
Sbjct: 407 RYEDVNDILTDIKVGLSMTSGTYIE--------------IPDRRRAIEFAISHAHDGDMI 452


>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
 gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 162/479 (33%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  +  +  DSR +     F  I G   DGH ++    +KG
Sbjct: 1   MILKQLLERLEYEVVQGSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+V  D+ A  G     V  V+D     AL   A       K  II ITG+ GKTTT
Sbjct: 61  AKAVIVQQDVEAPAGMT---VIRVEDTRYALALASAAYFGYPAEKLHIIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELG 168
             M+   L  +      IG+    IG  +  A                 V+       + 
Sbjct: 118 TYMIKSILEGVGHKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKMVEAGCDSVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  +   I + T +   H+        E+    K  +F+          N
Sbjct: 178 VSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKGLLFQQCR---VGIAN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEV 283
            DD +F+ +   +       + +FG  K AD +       S   ++ V          +V
Sbjct: 235 ADDRYFKDVFKNATC----KVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVAGVMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +        +    AL     K     R         FTL+ 
Sbjct: 291 EIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAKVKG----RIEMVKVSDEFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ L +  P    R + + G     G  S+    ++ EV        
Sbjct: 347 D-YAHNAMSLESLLTTLKEYHPK---RLVCLFGC---GGNRSRDRRFEMGEVSGRLADLT 399

Query: 404 VWLSG----FHVLALKDALPRSIH---VHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
           +  S         A+ D +   I      Y E +D      +  +    G+V+V+  K 
Sbjct: 400 IITSDNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKG 458


>gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 454

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 148/403 (36%), Gaps = 46/403 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V      V     L IPV    ++L  L +L          T IA+ G+ GKTTT  +L
Sbjct: 73  AVPETNPEVQEARRLGIPVIPRAEMLAELMRLR---------TGIAVAGTHGKTTTTSLL 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               ++        IG   N  G    L         G + +  +   +  FL   + P 
Sbjct: 124 AEIFTAAGLDPTVIIGGRLNSWGANAYLGE-------GEYLIAEADESDGSFLV--LAPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T +   HL  +   + I  A  E    +   G   +  DD   E +         +
Sbjct: 175 ITIVTNVDADHLDFYPDQQAIDRAFTEFMNKVPFYGVNVVCGDDPGVERILPGIR----R 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G       +      C E+   ++ +  +   +VV +  G H   N +  +G+  
Sbjct: 231 RIMTYGLRPGNRIRGE-ITSCQERCIFKLYVDEEYWADVVLNKPGRHNVLNSMAAIGVAL 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--- 361
                 +  ++ L  F    G G+R+     +G   ++D+ Y  +PA + A ++      
Sbjct: 290 EAGLPKEAILQGLERFG---GVGRRFEIKGEKGGILVVDD-YGHHPAEIGATLATAKDCY 345

Query: 362 -------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+ GD C++ +++     D+  +  +Y  S   + G   L+L
Sbjct: 346 PERRLVVAFQPHRFTRTKALFGDFCKVFDVA-----DVLLLTEIYAASEAPIPGVSGLSL 400

Query: 415 KDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + +   + V +    + +   +   L  GDV++   + + 
Sbjct: 401 AQGIRQVGKVDVSFFPNFEEMEAALPGLLRPGDVLLTLGAGNI 443


>gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
 gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 140/390 (35%), Gaps = 41/390 (10%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                IP+     +LG + +           T IA+ G+ GKTTT  ML+  L       
Sbjct: 89  AKEKGIPMLTRAQLLGQIMRNYD--------TSIAVAGTHGKTTTTSMLSHIL------- 133

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G  +  I V   L  +  ++  G  E  ++   E         P I +I  I   HL
Sbjct: 134 -LKGECDPTISVGGILPAIGGNIRVGQSETFLTEACEYTNSFLSFFPTIGIILNIDADHL 192

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  I++I  +     E L   G + +N D   +E++           + ++G   +A+
Sbjct: 193 DFFKDIDDIRHSFRTFAELLPAEGALIINADTPKYEMITENLPC----KVITYGLEHDAE 248

Query: 258 FQLRKWKQCS-EQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +            +   V   G+ +        G H   N L ++    +L    +    
Sbjct: 249 YTATDITYDELGHATFHVLHNGEDLGTCSLKVPGIHNVSNALASIAAGQLLDLSTEVIFD 308

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPH 366
            L  F    G  +R++     G  T+ID+ Y  +P  ++A +                PH
Sbjct: 309 GLKDFG---GTDRRFQYKGKIGDVTIIDD-YAHHPTEIEATLHAAKNYPHKKIWCVFQPH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVH 425
              R  A+L +  +   L+ + H+ LA++ +     ++   G     L++ +        
Sbjct: 365 TYTRTKALLPEFAK--ALTLADHVVLADIYAARETDNL---GISSRNLQEKIVELGTPCE 419

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           Y  T D +  F+  +   GD+++   +   
Sbjct: 420 YFPTFDEIENFLLENCTQGDLLITMGAGDV 449


>gi|56476226|ref|YP_157815.1| UDP-N-acetylmuramate--L-alanine ligase [Aromatoleum aromaticum
           EbN1]
 gi|81358257|sp|Q5P6Z7|MURC_AZOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56312269|emb|CAI06914.1| UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)
           (UDP-N-acetylmuramoyl-L-alanine synthetase), gene: MURC
           OR RSC2843 OR RS00262 [Aromatoleum aromaticum EbN1]
          Length = 471

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 163/430 (37%), Gaps = 56/430 (13%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           + HA +   GA  VV++T +      +       +P+     +L  L +L          
Sbjct: 55  VGHAAENVAGADAVVISTAVRNDNPEVVAARSRHVPIVPRAQMLAELMRL---------K 105

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L+               IG  L  A     +  G F + 
Sbjct: 106 HGIAIAGTHGKTTTTSLVASILAEGG------MDPTFVIGGKLNAAGANARLGKGDFLVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL  L+ P I+VIT I   H+  +      +  A  +  + L   G   L  
Sbjct: 160 EADESDASFL--LLTPVISVITNIDADHMDTYGHDFARLKQAFVDFLQHLPFYGVAVLCE 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           DD     +      L  K +  +G S++A+ +    +    +   +V     S   + + 
Sbjct: 218 DDPHVRSIM----PLVSKQVVRYGLSESANIRAENVRAEGGRMLFDVVRTNGSVSRLPIE 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQG 337
            +  G H   N L  + + + +       IKAL+ F     R +RY            QG
Sbjct: 274 LNLPGVHNVLNALAAIAVATEVQVPDAAIIKALAEFRGVGRRFQRYGEVALRDAEGTPQG 333

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             TLID+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS
Sbjct: 334 SCTLIDD-YGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLS 388

Query: 398 LYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +    + V+ +G   +   D   L R+I V       + E +D +   + +++ DGDV
Sbjct: 389 TVDALLLAEVYAAGEAPVVAADGRSLARAIRVAGKVEPVFVEDIDEMPATVLAAVRDGDV 448

Query: 447 VVVKSSNSCG 456
           V+   + S G
Sbjct: 449 VITMGAGSIG 458


>gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
 gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
          Length = 471

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/426 (20%), Positives = 145/426 (34%), Gaps = 50/426 (11%)

Query: 57  ILHAVQKGA-----GLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I  A+  GA       VVV           V +     IPV    ++L  L +L      
Sbjct: 54  IAVAIGHGADNLGDAAVVVTSTAITRSNPEVEAALERRIPVVRRAEMLAELMRLKS---- 109

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 +A+ G+ GKTTT  M+   L +       I      I    + AR+    D+ +
Sbjct: 110 -----TVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN--GGIINSYGSNARLGAS-DWMV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S    +R     +   IAV+T I P HL ++   + +  A  E  E +   G   
Sbjct: 162 VEADESDGSFLR-----LDGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFVENVPFYGAAL 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           L  D    + +  +      + + ++G S  AD +          +  E  ++ +     
Sbjct: 217 LCLDHPEVQNILPRVR---DRRVVTYGFSAQADVRGVNVTPIPGGNRFEAIIRHRDGSSR 273

Query: 285 ------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  QN L  +G+   L  D  T  +    F   + R  +       G 
Sbjct: 274 SIEGIELPMPGRHNVQNALAAIGVALELGIDDATIQQGFGQFGGVKRRFTKVGEIAVDGG 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAE-- 394
              + + Y  +P  ++A   VL+       GR IAV+       +G L + F     +  
Sbjct: 334 VATVIDDYGHHPVEIRA---VLAAAREGARGRVIAVVQPHRFTRLGNLMEEFQTAFNDAD 390

Query: 395 ---VLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
              V  +Y      + G    AL + L R  H         D L   +  S+   D++V 
Sbjct: 391 RVLVTPVYAAGEQPIEGVDASALVEGLKRRGHRSTATVADADALAEDLSGSIRADDMIVC 450

Query: 450 KSSNSC 455
             +   
Sbjct: 451 LGAGDI 456


>gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 533

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 170/492 (34%), Gaps = 62/492 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L     G          V+  +I S  + P   F A+ G    G  F   A   GA
Sbjct: 18  TLRELAALTGGTVAATHQDVTVDSAAIGSADVQPGGLFCAVPGSRVHGATF---AADSGA 74

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
             V+ + +    +    +P+  VDDV   +     AV         II ITG+ GKTTT 
Sbjct: 75  AAVLTDAEGAEILADADLPLLVVDDVRRWMGPVAAAVYGHPSRDLRIIGITGTSGKTTTT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFEL 167
            ++  AL + K +   IG+    I       ++                   V   + E+
Sbjct: 135 YLIERALMA-KHSVGIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEV 193

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TI 223
               L   R     +   +A  T ++  HL     +E+    KA++F   +  G      
Sbjct: 194 SSHALALGRVT--GIDFDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAA 251

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQ-SWMEVQLQGKS 280
            +  DD + + L       G++   + G +K   AD+Q+            + V  +G+ 
Sbjct: 252 VVCVDDDWGQRLAGMIADSGLQA-LTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEE 310

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G     N L+ +  V+ L  D   A  A++     +  G+       Q F  
Sbjct: 311 FSYDIGLVGSFNVANSLLAISCVTQLGEDPQAAAAAIA---DVQVPGRMQAVDAGQPFLA 367

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   P ++ A +  LS   P   GR   VLG     G         + E  +   
Sbjct: 368 VVD--YAHKPGAVAAVVRTLSDYLPSPTGRIGIVLGA---GGNRDHDKRPMMGEEAAKV- 421

Query: 401 ISHVWLSGFH----------------VLALKDALPRSIHVHYSETMDGLFLFIQSSL--- 441
              V+++  +                V    +A   +    + + + G    I++++   
Sbjct: 422 ADAVFVTDDNPRDEEPAPIRSMILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWA 481

Query: 442 VDGDVVVV--KS 451
             GD +VV  K 
Sbjct: 482 RPGDAIVVAGKG 493


>gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
 gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
          Length = 505

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 170/488 (34%), Gaps = 55/488 (11%)

Query: 1   MNPLWTFHDLLQAI--QGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           + P  T   L  AI  QG  I +V P   V G+SIDSR++ P+  F A KG  +    ++
Sbjct: 5   LPPETTLSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGPEALF-ACKGAAFKP-AYL 62

Query: 58  LHAVQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAI 113
             A+  GA   + +   +   S  +  +     DD+    A    A   R   +  I+ I
Sbjct: 63  EDALNAGAAAYLCDESSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDIMGI 122

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSY--NNHIGVPLTLARMPVDVD---------- 161
           TG+ GK+TT  +L    ++     + IGS   ++ I    +    P  VD          
Sbjct: 123 TGTKGKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFNTAE 182

Query: 162 ----FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFE 215
                 + E+    L   R L  ++   +A    I   H+S       E+  ++K  IF+
Sbjct: 183 SGRKHLVMEVSSHALKYDRTLGLML--DVACFLNIGRDHISPSEHPSFEDYFASKLRIFD 240

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEV 274
                 T  +N D    + +    HA   + + +FG     AD+  R  + C +    ++
Sbjct: 241 QCR---TAVVNLDSDLVDEVLE--HARRAERLLTFGVDRPEADYSARDVRPCRDGIAFDL 295

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +G +  +     G   A+N L  + +  I     +     L+          R     
Sbjct: 296 ACEGGARPMTLGMAGLFNAENALAAIAMARIAGIGFEDIASGLAHVRVPG----RMEVVR 351

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +    T+    Y  N  S K   + +     H   + +AV G     G+ +      L  
Sbjct: 352 SAAGSTIALVDYAHNELSYKTFFTSVR--KEHLAAKVVAVFGAP---GDKAFERREVLPR 406

Query: 395 VLSLYNISHVWLSG----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           V + +    ++           A+ + L    P           +   +       + D 
Sbjct: 407 VAAQFADYLIYTEEDPAHEDPRAIAEELAANTPADTPCEIIVDREQAIIRAFEVAGENDA 466

Query: 447 V---VVKS 451
           V   + K 
Sbjct: 467 VVCLLAKG 474


>gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 406

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 142/373 (38%), Gaps = 15/373 (4%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
                 +  +  R   K T IA+TGS GKT+T   L   LS    +      +N    + 
Sbjct: 13  TRWQFLRYLICRRFYDKTTAIAVTGSCGKTSTTHFLGKILSDRD-SCRIGILFNCRKAII 71

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L R+     F + E+G+   G +     L+RP I ++T++   H  NF  +E  A  K
Sbjct: 72  KNLRRVNSSHRFVLQEVGVEGTGCMNERLPLLRPRIGIVTSVGQDHYCNFRTLEATAFEK 131

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQ 269
            ++ E L ++G   LN DD     +  +S A     + ++G  + AD +    +    E+
Sbjct: 132 GKLIEFLPESGVAVLNADDPHVLAMARRSKA----RVLTYGLWEEADVRGSDIRCAWPER 187

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             + V  QG+S+ +     G  +A ++L  +        D+       +  H  E   +R
Sbjct: 188 LSLAVTYQGESVRIETGLFGSLLASSILAAVCGALAAGIDLKQCA---ASLHAVESFPRR 244

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I ++  A   ++   +  ++  +     R+  V G   +    S S +
Sbjct: 245 MTIHATSQRAWYICDTAKAPYWTVAKVLEPMTDAAAP---RKTVVFGSFSDTSGSSSSKY 301

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
             +A          V+  G     ++  L           E++      +   +V  +++
Sbjct: 302 RSMAREALNV-ADRVFFVGNKAQHIRRLLTPETDGRLFMVESLQAAARLLAEDVVADELI 360

Query: 448 VVKSSNSCGFYRL 460
           ++KSSN     RL
Sbjct: 361 LIKSSNMEHAERL 373


>gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
 gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
          Length = 480

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 156/429 (36%), Gaps = 46/429 (10%)

Query: 49  PHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
            ++    FI H  +    A ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 60  ENFGATIFIGHRAENAEQADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 118

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     IA+ G+ GKTTT  +L    ++              IG  L  A     +
Sbjct: 119 --------HGIAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLNAAGTNAQL 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
               F +  +   +  FL   ++P ++V+T I   H+S +     ++     E    L  
Sbjct: 165 GSSRFLIAEADESDASFL--HLQPMVSVVTNIDADHMSTYGGDFNKLKKTFIEFLHNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG- 278
            G   L  DD     L  +      +   ++G S++AD +    +Q   +++  V     
Sbjct: 223 YGLAVLCVDDPVVRELLPQV----GRPTVTYGFSEDADVRAINVRQEGMRTYFTVLRPDC 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + ++V  +  G H   N L T  I +    D    +  LS F     R + Y      G 
Sbjct: 279 EPLDVSVNMPGNHNVLNALATTAIATDEGIDDAAIVSGLSGFQGVGRRFQVYGELPVDGG 338

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ + Y  +P  + A I  +    P    R + V          ++  + D  +VL  
Sbjct: 339 SVMLVDDYGHHPREVAAVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVQVLGE 394

Query: 399 YNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            N+     V+ +G   +   D+  +  SI         Y E    L   ++  L  GD++
Sbjct: 395 ANVLLLVEVYPAGEEPIPGADSRQMCHSIRQRGQLDPIYVERGADLAPLLKPLLRAGDIL 454

Query: 448 VVKSSNSCG 456
           + + +   G
Sbjct: 455 LCQGAGDIG 463


>gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
 gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
          Length = 470

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 158/402 (39%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +  A     ++P+    ++LG L        + +  T +AI+G+ GKTTT  M
Sbjct: 88  AAIHEDNEEFAEAKRRNLPMLSRAELLGQL--------MTNYKTPVAISGTHGKTTTTSM 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  ++  G  +L ++   E         P 
Sbjct: 140 LSHI--------ALAANLDPTISVGGILKAIEGNIRVGGPDLFITEACEYTNSFLHFSPK 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  +   HL  F  +++I ++     + L + GT+ +N D    + ++  +  L  +
Sbjct: 192 IGIILNVDADHLDFFKDLDDIRNSFHLFAKLLPENGTLVINGD---IDKIEEITSDLSCR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            + +FGK  + D+         +  +  +V   G+++  +   + G H   N L  + + 
Sbjct: 249 -VITFGKEASLDYSAANITYNEQGNASFDVVKDGQNVAHLALAVGGEHNVYNALAAIAVA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            IL    +T    L+ FH   G  +R+      G  T+ID+ Y  +P  + A +   +  
Sbjct: 308 DILGVPAETIQTGLASFH---GTDRRFEYKGEVGGVTIIDD-YAHHPTEIAATLKSAAHY 363

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  +  E   L+ + H+ LA++ +      +   G     L
Sbjct: 364 PHKKLWCIFQPHTYTRTKALFSEFAE--ALAHADHVILADIYAARETDTL---GISSTQL 418

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            DA+        Y  +   +  F+ +    GD+++   +   
Sbjct: 419 ADAVKEHGCDATYLPSFAAIEEFVTTHCQPGDLLITMGAGDV 460


>gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           C6786]
          Length = 464

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 158/423 (37%), Gaps = 47/423 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLGVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +      L  K +  +G + +A  +    +    +    V  +G+  + VV
Sbjct: 216 CIDDPNVRQIV----PLISKPVVRYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H  QN L  + I S L        +AL+ F+    R +RY      G    + +
Sbjct: 272 LNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLID 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y  +P  M A I   +       GRR  VL         ++    D   VLS  +    
Sbjct: 332 DYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALVL 387

Query: 402 SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   +     DAL R++         +  T+D +   +      GDVV+   + 
Sbjct: 388 TEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARVGDVVITMGAG 447

Query: 454 SCG 456
           S G
Sbjct: 448 SIG 450


>gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
 gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
          Length = 528

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 157/466 (33%), Gaps = 50/466 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              + G+S+DS    P E F  + G    G  F   AV  GA  V+ + D    +     
Sbjct: 44  DLSILGVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLTDADGAQIVHQTAP 103

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             PV    D    +  L+              A+TG+ GKTTT   L   LS+       
Sbjct: 104 GTPVLVHSDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMV 163

Query: 140 IGSYNNHI-----------GVPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            G+    +                L RM        V     E   SH   +  L  +V 
Sbjct: 164 AGTVELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEAS-SHAIVLHRLDGIVV 222

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A  T +   HL     +E    AKA++F   E      +  DD +   L A++  + 
Sbjct: 223 -DVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTP-EHARRGVVCVDDQWGAALAAEAP-IE 279

Query: 244 IKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTL 300
           I  + ++     AD+ +           +   +    G+ +E      G    QN  + L
Sbjct: 280 IDRVRAYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQNAALAL 339

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +         TA  AL+  H   GR +R      +    ++D  +   P +M+ A+  +
Sbjct: 340 VMAIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPDAMELALKAV 397

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKD 416
             I+P   GR I V G     G+  Q     L EV +      V             +++
Sbjct: 398 RPITP---GRLIVVFGS---DGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRN 451

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLV-------DGDVVVV--KS 451
           A+   +     +   ++ +  +   ++          D V+V  K 
Sbjct: 452 AILEGVRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKG 497


>gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 624

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 158/382 (41%), Gaps = 32/382 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD-FILHAVQ 62
           ++T  D+  A  G  +     G    ++ D+R +A  + F A+ G   D H+ F+   +Q
Sbjct: 80  VFTASDIASATGGTLVRDAAAG---SVTTDTRDVAGGKWFLALVGETRDAHEEFVNDELQ 136

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG--KT 120
                V V +            V    D   AL +LA   R R    ++ +  +    KT
Sbjct: 137 N-TECVGVISSRPPPGSWRKGYVQTACDPTTALQRLASDVRDRFPPDVVVVGVTGSVGKT 195

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+ +   AL+S+   +   G++NNH+G+PLTL + P DV   + ELGMS LGEI  L  
Sbjct: 196 TTRALTARALASLGVVHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALGEISTLAK 255

Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           + RP + ++T +APAHLS     I  +A AKAE+F+G        +N DD     +    
Sbjct: 256 IARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADDEHVAGMT--- 312

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------------------GKS 280
                  + +FG +  A     +          +V                       + 
Sbjct: 313 -IPDGVRVVTFGAAAAAAAGGTERDGGGGGRPPDVSYDDVVSRALKGLSFTLRAAASDEK 371

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V     G HMA N              ++ A K +  F   +    R          T
Sbjct: 372 VAVSLPAPGAHMASNAAAACACAVAAGVSLEDAAKGVEAFESDDAARLRV-VETPGSKLT 430

Query: 341 LIDESYNANPASMKAAISVLSQ 362
           ++D++YNA+PAS+ AA+ V+  
Sbjct: 431 IVDDAYNASPASVLAALRVMKD 452



 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--- 427
              +LGDM E+GE S+  H D+ E         + L+G   +          +V      
Sbjct: 520 TFVLLGDMLELGEASKQHHEDVIEACLDAGFDKIGLAGPEFVEALRVFFPKRNVQSVVIA 579

Query: 428 ETMDGLFLFIQ--SSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + ++ L+  I+    +     V+VK S       +++ L 
Sbjct: 580 KDVEDLWDIIEGTQIIGPNARVLVKGSRGMKMDYIVDRLR 619


>gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
 gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
          Length = 495

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 157/479 (32%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       ++ +  DSR +     F  I G   D HDFI   V+KG
Sbjct: 6   MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+    G   +    VD+   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 66  AAAVVVEKDVTPIEG---VTYIKVDNTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLT---------LARMPVDVDFGIFELG 168
             M+   L S       IG+      +  I    T         L +  VD       + 
Sbjct: 123 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +          I V T + P H+         +    K+ +F           N
Sbjct: 183 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADYMHCKSLLFRQCRLG---IFN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
            DD   E +           + ++G     +      +   E   + V+         +V
Sbjct: 240 GDDEHLEGVMKGHTC----QVETYGYKSTNNLIAENVELKKEHGALGVKYHVSGLLDFDV 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  + I      D           H    +G+     + + +  +ID
Sbjct: 296 EVNVPGKFSVYNSLTAIAICHHFNVDKKAI---GEALHHVSVKGRIEIVPVTKRYTLMID 352

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  ++++ ++ L +  P   GR + + G     G  ++S   ++ EV S      
Sbjct: 353 --YAHNAMALESLLTTLKEYEP---GRLVCLFGC---GGNRAKSRRYEMGEVSSRLADLT 404

Query: 404 VWLSG-----FHVLALKDALP--RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S        +  + D L         Y           +   +  DGD++V+  K 
Sbjct: 405 VVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 463


>gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SSC/2]
 gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 485

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 168/479 (35%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+  +   +       ++ +  DSR I     F  I G  +DGH F+  A + G
Sbjct: 1   MILKELLERSEYTLVQGSEDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+       ++ V   D+   AL +++ A       + T I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVEVPE---NLTVIKFDNTRLALAEMSAAYFGYPAEELTTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             M+   L    +    IG+    IG     +       + + E              + 
Sbjct: 118 TYMIRAVLEHAGQKTGLIGTIETIIGDERIPSVNTTPESYIVQESFRKMADAGLKNVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +   T        + T +A  H+       +++    K+ +F+  ++     +N
Sbjct: 178 VSSQALMLHRTSGFEFDYGIFTNLAEDHIGENEHKDMDDYIHCKSLLFKQCKQG---IVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEV 283
            DD + E +           I ++G     D       +  E  ++ V   L+GK    V
Sbjct: 235 GDDDYVERIIKDHTCA----IETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGKQEYNV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +   +    +  + AL+    K     R       G +TL+ 
Sbjct: 291 HVDIPGDFTVYNSLAAISLCRHMGIVKEDVLSALNTIQVKG----RLEIIKTPGDYTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ + + +P    ++I  L      G  +++   ++ EV S      
Sbjct: 347 D-YAHNAMSLESLLTTIRKYNP----KKIYCL--FGCGGNRAKARRYEMGEVSSKLADLT 399

Query: 404 VWLSG-----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S        +  + D L                     +       GD+V++  K 
Sbjct: 400 VVTSDNPRNEEPMDIINDILIGVHKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKG 458


>gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
 gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
          Length = 480

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 155/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKG--AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA +    A ++VV++ +  S   +       IPV    ++L  L +          
Sbjct: 67  FIGHAAENAEQADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  +L    ++              IG  L  A     +    F +
Sbjct: 119 -HGIAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLNAAGTNAQLGSSRFLI 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P ++V+T I   H+S +      +     E    L   G   L 
Sbjct: 172 AEADESDASFL--HLQPMVSVVTNIDADHMSTYGGDFNRLKKTFIEFLHNLPFYGLAVLC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  +      +   ++G +++AD +    +Q   +++  V     + ++V  
Sbjct: 230 VDDPVVRELLPQV----GRPTVTYGFAEDADVRAINVRQEGMRTYFTVLRPDCEPLDVSV 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I +    D    +  LS F     R + Y      G   ++ + 
Sbjct: 286 NMPGNHNVLNALATIAIATDEGIDDAAIVAGLSGFQGVGRRFQVYGELPVDGGSVMLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I  +    P    R + V          ++  + D  +VL   N+    
Sbjct: 346 YGHHPREVAAVIKAVRGGWPE--RRLVMVY--QPHRYSRTRDLYDDFVQVLGEANVLLLV 401

Query: 403 HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D+  +  SI         Y E    L   ++  L  GD+++ + +  
Sbjct: 402 EVYPAGEEPIPGADSRQMCHSIRQRGQLDPIYVERGVDLAPLLKPLLRAGDILLCQGAGD 461

Query: 455 CG 456
            G
Sbjct: 462 IG 463


>gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio
           fibrisolvens 16/4]
          Length = 490

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 158/479 (32%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +            ++ +  DSR +     F  I G   D HDFI   ++KG
Sbjct: 1   MKLTTLLEELDYELYAGELDKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFIPDVIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  +++  D+    G   I    V +   AL  L+ A       +   I ITG+ GKTTT
Sbjct: 61  ATAIIIEKDVEPVDG---ITYIKVANSRQALAILSAAYFGHPAKELKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELG 168
             M+   L         IG+  + +G                  L R  VD       + 
Sbjct: 118 TYMVKSILEKAGIKTGLIGTIESIVGEERIPAVNTTPESYRVQELFRQMVDAGLDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +          I V T + P H+        E+    K+ +F+  +       N
Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGENEHKDFEDYMHCKSLLFQQCK---VGIFN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEV 283
            D    E +           +  +G  K+ D      +  +E   + V+      + M V
Sbjct: 235 GDSEHIEGILKGHTC----DVIKYGYGKDNDLIAENVELLNENGALGVRYHITGKEDMTV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  + I        D    AL   H K     R         FT++ 
Sbjct: 291 EVNVPGTFSVYNSLTAVAICKQFNVAEDKIKSALMNVHVKG----RIELVPVSSKFTVMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  ++++ ++ L    P   GR + + G     G  ++S   ++ EV S      
Sbjct: 347 D-YAHNAMALESLLTTLKAYEP---GRLVCLFGC---GGNRAKSRRYEMGEVSSKLADLT 399

Query: 404 VWLSG-----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  S        +  + D L                     +  ++  +GD++V+  K 
Sbjct: 400 VVTSDNPRNEEPMDIINDILIGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKG 458


>gi|237799292|ref|ZP_04587753.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022148|gb|EGI02205.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 486

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +         +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREILPMVK----RPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|289209360|ref|YP_003461426.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944991|gb|ADC72690.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 478

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 152/413 (36%), Gaps = 45/413 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IP+    ++L  L +             IA+ G+ GKTTT  ++   L+ 
Sbjct: 88  PEVQAARRRGIPIVRRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLVASVLAE 138

Query: 133 IK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T+   G  N+      + + +    D+ + E   S    +      ++P I+++T
Sbjct: 139 AGMDPTFVIGGRLNST----ASHSNLGAG-DYLVAEADESDASFLH-----LQPMISIVT 188

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL  +      + +   E    L   G   L  DD     L  +      +   +
Sbjct: 189 NIDADHLGTYGNDFGNLRATFLEFLHHLPFYGIAVLCADDPQVRDLYPELE----RPRLT 244

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G    AD +    +Q   + + +++L G++   V  +  G H   N L    +   L  
Sbjct: 245 YGIEAQADVRALNVRQEGVRMFFDLKLPGQAAFPVTLNLPGRHNVLNALAAAAVAHELEV 304

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +    AL  F     R +       QG  TL+D+ Y  +P  ++A  +      P  +
Sbjct: 305 APEAIQAALERFQGIGRRFQVQELETAQGPLTLVDD-YGHHPREIEATQAAARDAWP--D 361

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            RRI V          ++    D AE LS  ++     V+ +G   +   D   L R+I 
Sbjct: 362 RRRITVF--QPHRYTRTRDLFEDFAEALSETDVLILLEVYPAGEEPIPSADGRSLARAIR 419

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +       + E    +   +   L   DVV+ + +   G  RL +LL ++  A
Sbjct: 420 LRGQVEPVFVEHAADVAEVLSGMLKPNDVVITQGAGDIG--RLASLLPDQLGA 470


>gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 552

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 176/477 (36%), Gaps = 45/477 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L +     S+G V    + GI++ +  +   EAF AI+G +  G +F   A ++GA 
Sbjct: 23  LAELARRFGVRSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAERGAV 82

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTT 122
            V+ + +      S  +P+  V+D    L  L+              ++A TG+ GKT+ 
Sbjct: 83  AVITDAEGAEIAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTGTNGKTSV 142

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--------------DVDFGIFELG 168
             +L   L  +        +   HI   + ++R+                +       + 
Sbjct: 143 SHLLEGILGQLGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEAVAVE 202

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     R     +   +A  T +   HL +++ + E   AK  +F   ++     +  D
Sbjct: 203 VSAQALTRHRVDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRA-DRARRGVVCLD 261

Query: 229 DSFFELLKAKSHALGIKTI---YSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVV 284
            +    + A++    +  +    +   S +AD+ +    +  E +   ++   G+++  V
Sbjct: 262 SASGAEIVARAEIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRALTTV 321

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG HMA N  + + ++       +  + AL           R +         +  +
Sbjct: 322 VPVIGRHMAANAGLAIVMLLETGYAWERLVDALDGGRIDASLPGRTQLVSGPEGPAVYVD 381

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +  +P + +  ++ + +++P   G+ + + G     G+   +   D+     +     +
Sbjct: 382 -FGHSPDAFEKTLAAVRRVTP---GKVVMLFGA---DGDRDATKRHDMGRTA-VLGSDIL 433

Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            ++  H                 + A P +  + ++     +   ++  + +GD ++
Sbjct: 434 VVTDHHPRHEDPDAIRAVLVEGARRARPDAEILEFTPPERAILEAVK-LVGEGDAIL 489


>gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
 gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
          Length = 488

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 173/468 (36%), Gaps = 42/468 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+   + G      V  ++ DSR + P   F A+ G   DG  F   A   GA  +V 
Sbjct: 7   LGALFPEAAGAASALPVAALTADSRRVGPGAVFVAVPGTRADGRLFAAQAAAAGAVAMVA 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                A +    +    V D   AL   A        AT++A+TG+ GK++  + +   L
Sbjct: 67  EGPRPADLPQA-VAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGKSSVADFVRQIL 125

Query: 131 SSIKKTYACIGSYN---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + + +  A +G+                 + + +  TL R+  D    +     SH  E 
Sbjct: 126 ARLGRRSASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDLAMEASSHGIEQ 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFEL 234
           R L   VR   A  T +   HL     +E   +AK  +FE L   G T  +N D    + 
Sbjct: 186 RRL-DGVRLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAIVNADGPMADR 244

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A   A  +  + + G++     +L   +       + +  QG+++ V    +G +  +
Sbjct: 245 AVAAIRARSLPLVTT-GRAGE-TLRLDAVETRGFAQRLTLAAQGRALTVDLPLVGSYQVE 302

Query: 295 NMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           N L+   +V    A    ++  I AL       GR +R   A ++G   ++D  Y   P 
Sbjct: 303 NALVAAALVLATPAGRGRLEAVIGALGHLAGVPGRLER--VATHRGALCVVD--YAHKPE 358

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++   +  L    P   GR + V   M   G+  ++    +   +++     V ++  + 
Sbjct: 359 ALAGVLQALR---PFATGRLVCV---MGCGGDRDRAKRPMMGR-IAVAGADRVIVTDDNP 411

Query: 412 LA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +        + L  +                   L  GDV+VV  K 
Sbjct: 412 RSEEPAAIRAEILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKG 459


>gi|257483446|ref|ZP_05637487.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330987135|gb|EGH85238.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011578|gb|EGH91634.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 486

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 164/431 (38%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +  +      +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREILPQVK----RPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A IS +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVISAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|251811443|ref|ZP_04825916.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805033|gb|EES57690.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 552

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 145/329 (44%), Gaps = 4/329 (1%)

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N    V L L +M    +F + E+ ++ L  +   ++L++P+IA++T I  AH+S F 
Sbjct: 18  NNNIRSAVYLLLCKMIRQPNFAVLEVSLNALNAVGNSSYLIKPNIAIVTGIGAAHMSTFK 77

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQL 260
            I  I   KA IF+GL   G   +N D    ++L  ++       + ++     +A    
Sbjct: 78  DILNIVEVKASIFDGLTPEGVAIINKDTLHSDILIERAK-QNTSNVITYSTHDSSATICP 136

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  +     + + +   G+      + I   M +N L T   +S L   ++ A++ LS F
Sbjct: 137 KSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENSLATFATLSHLDIPLERALENLSTF 196

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P E                LID+++NA+  +M  AI   +  +   +G +I  +G + +
Sbjct: 197 KPFEKVLNLKEVETPNYKVNLIDDTHNASLPAMINAIKAFNTQTKFFKGNKIIAIGQISD 256

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ S+S H+ L +VL   N  ++      + ++   + +S ++ +      L   +   
Sbjct: 257 LGKHSKSLHLQLVDVLENSNADYILCMDDALKSVVIGV-KSKNITWYSNRHLLEKDLLYL 315

Query: 441 LVDGDVVVVKSS-NSCGFYRLINLLLEEF 468
                + ++KSS     F +L   L E+ 
Sbjct: 316 NKPDSLTLLKSSAGGTEFPKLAKELPEKL 344


>gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 505

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/489 (18%), Positives = 173/489 (35%), Gaps = 57/489 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + H LL+AI       +    +  IS DSR +   + FF + G   +G  F   A   GA
Sbjct: 4   SLHSLLKAIGLDVPIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGA 63

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTT 121
              VV ++            V  V D +             +   +  +I +TG+ GKTT
Sbjct: 64  VAAVVGDSARDCIPHDKKNLVVVVPDPVSQWMGEIASVFWGKPSLEMALIGVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVD-VDFGIF 165
           T  ++     S  K  A +G+  N                  +   L+++          
Sbjct: 124 TTHLIEHLSKSSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLCAM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTG--T 222
           E+    L +       +    A+ T +   HL     +E    AKA +F+  L K G   
Sbjct: 184 EVSSHALSQ--RRVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQAR 241

Query: 223 IFLNYDDSFFELLKAK------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             +N DD +   L  +        +L +K I S       +  +   K  +  +   +  
Sbjct: 242 AVVNIDDQWGFRLAKRLGRNCWKSSLDLKNIQSV----RPELFITGIKMTAAGAEGFIHT 297

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                  +   IG     N+L ++G++      +DT + A + F    GR ++ +  +  
Sbjct: 298 PFGEGPFMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVKS 357

Query: 337 G--FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 ++   Y   P  +K A+     + P   G+ I V G   +  +  +S+  ++A 
Sbjct: 358 DSLPMPIVLVDYAHTPDGLKNALKA---VRPFVSGKLICVFGCGGDRDKSKRSYMGEIAA 414

Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDG 444
            +S      V ++         +A+ + +   I   +   ++      + + I  +    
Sbjct: 415 EIS----DIVIVTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHA-KSN 469

Query: 445 DVVVV--KS 451
           D++++  K 
Sbjct: 470 DLIIIAGKG 478


>gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
 gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
          Length = 489

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 162/448 (36%), Gaps = 42/448 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SI 83
           + G++ DSR + P   F A KG   DG  F   A   GA  ++   D  A + +L   ++
Sbjct: 21  ITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAAGAIAILCAEDAAAEVRALVPETV 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V    +      K+A         TI+A+TG+ GKT+          +     A +G+ 
Sbjct: 81  AVVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHFARQIFQAAGHPAASLGTL 140

Query: 144 N---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                           + + +   LA +  + V+    E     L + R     VR   A
Sbjct: 141 GLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASSHGLDQYRL--DGVRLTAA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     IE   +AK  +F E L   GT+ L+  + + + + A +   G+  
Sbjct: 199 AFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEKYADRVMAVAQERGL-P 257

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +++ G++      L   +       + +Q      +V    IG     N L+  G+    
Sbjct: 258 VFTVGETGRN-LTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQVSNALIAAGLAISA 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  TA++AL       G   R   A       LI   Y   P ++  A+  L    P 
Sbjct: 317 GIDTGTALRALENLKGAPG---RLELAGRTPAGGLIFVDYAHKPDALDNALVALK---PF 370

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
             G+   V+G   +     +    ++A          V ++          A++ A+   
Sbjct: 371 ARGKLSVVIGAGGDRDPGKRELMGEVA----ARRADLVIVTDDNPRSEDPAAIRKAVMSG 426

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVV 447
               +   +  + +   ++  L DGD++
Sbjct: 427 APGAIEIGDRYEAIAEGVRR-LKDGDIL 453


>gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 33/364 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T IA+ G+ GKTTT  M++  L             +  I V   L  +  ++  G
Sbjct: 107 MRNYDTPIAVAGTHGKTTTTSMISHIL--------LESDCDPTISVGGILPVIGGNIRVG 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  ++   E         P I++I  I   HL  F  IE+I  +     E L   GT+
Sbjct: 159 NSETFVTEACEYTNSFLSFFPKISLILNIDADHLDFFKDIEDIRHSFRLFAEKLPADGTL 218

Query: 224 FLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM 281
            +N D D + E+++          I ++G + NAD+  +  +      +  +    G ++
Sbjct: 219 IINSDTDKYTEIIRDLPCE-----IITYGLNSNADYTAQNIQYNEYGYATFDCVKDGVNL 273

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L TL +   L  + +     L  F    G  +R++     G  T
Sbjct: 274 GTYSLSVPGIHNVSNALATLVLGFKLGLNSEALKTGLKHFQ---GTDRRFQYKGKVGEVT 330

Query: 341 LIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           +ID+ Y  +P  +KA ++               PH   R  A+L +       +   H+ 
Sbjct: 331 VIDD-YAHHPTEIKATLTAAKNYPHKSLWCVFQPHTYTRTKALLPEFARALTFAD--HVV 387

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           LA++ +     ++ +S   +   K  L      HY  T D +  ++  + + GD+++   
Sbjct: 388 LADIYAARETDNLGISSRDLQ--KQILELGTDCHYFSTFDEIENYLLENCIPGDLLITMG 445

Query: 452 SNSC 455
           +   
Sbjct: 446 AGDV 449


>gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
 gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
          Length = 525

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 92/486 (18%), Positives = 170/486 (34%), Gaps = 60/486 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L +A+            + G+S+DSRS+ P + + A+ G    G +F   A  +GA
Sbjct: 21  TAAELARALGA--AAPEEDLALRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGA 78

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            + + +        +  +P   VDD     AL    V  R   +   I +TG+ GKT+  
Sbjct: 79  AMALTDPAGRERCEAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSVT 138

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------------------VPLTLARMPVD-VDF 162
             +T AL  +      IG+                          +   LARM  D V+ 
Sbjct: 139 TAITRALLELGVPAGAIGTSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAEDGVEV 198

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L  +      V   +   T +   HL     +E    AK  +F        
Sbjct: 199 VSMEVSSHAL--VLHRADEVVYDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFTPAHARRG 256

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKS 280
             +  DD +   L  ++       + ++      +AD + R+ +     S +EV     +
Sbjct: 257 -VVCVDDDWGRRLAREAQI----PVTTYATRPGIDADHRAREHRADGYGSIVEVDGPDGT 311

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G H   N L    +++ +    +  ++AL       GR +       +G   
Sbjct: 312 RTLHAALPGRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRMEPVAHTPIRGVV- 370

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y+  P +++ A+  L  +     GR + V   M   G+  ++    + EV + Y 
Sbjct: 371 ----DYSHTPDALEQALLTLRAVPG--TGRLLVV---MGAGGDRDRAKRPLMGEVAARY- 420

Query: 401 ISHVWLSG-----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVD-GDVVV 448
              V ++          A++  +   I       VH  +        + + L D  D ++
Sbjct: 421 ADVVLVTDDNPRTEDPAAIRAEVLSGIPEGTKAQVHDVDGRGEAIA-LAAYLADVSDTIL 479

Query: 449 V--KSS 452
           V  K +
Sbjct: 480 VAGKGA 485


>gi|330888571|gb|EGH21232.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 486

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P + V+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVGVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +  +      +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREILPQVK----RPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I   S +      RR  V+         ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVI---SAVRGGWPDRR-LVMVSQPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
 gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
          Length = 486

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 160/485 (32%), Gaps = 72/485 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFIL 58
            T  +L       +    P   V G+++DSR + P   F A+ G         DGHDFI 
Sbjct: 1   MTLEELFAPFGLKA----PPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIP 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
            A+ KGA  VV   ++     SL +P   V D   AL  LA         K  ++ ITGS
Sbjct: 57  EALAKGAIAVVGEREL-----SLPVPYLRVGDAREALAHLARHFFGEPDRKLALLGITGS 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA------------------RMPV 158
            GK+TT  +L   L + +K  A + +    +G                         +  
Sbjct: 112 KGKSTTASLLHHLLQAGEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQVYGFLREAVER 171

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA-HLSNFSGIEEIASAKAEIFEGL 217
            ++  + E+    L   R     +   I V  +  P  HL      E   +AKA + E  
Sbjct: 172 GLEAAVLEVSSHALALKR--VEGLSYRIGVFVSFYPDDHLDLHGTAEAYFAAKALLVER- 228

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
             +    LN      + L  + H L              +      ++  E     +   
Sbjct: 229 --SHLAVLNTRLPHLKRLLPRPHLL---------FGPGGEVWGEGLREGEEGLRFTLHTP 277

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S E     +G +   N L            ++  ++ L+ F    G   R      + 
Sbjct: 278 WGSGEAFLPMLGRYNLDNALAASAAALAYGLSLERVLQGLATFRGVPG---RMEVVQRKP 334

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  +ID  +     S++ A+  L   +    GR + V+G   E     +    D+  V +
Sbjct: 335 FRVVID--FAHTGKSLEEALKTLRATT---RGRLLLVVGAAGERDPRRRE---DIGRVAA 386

Query: 398 LYNISHVWLS----GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448
                  +         + A+ +AL ++                      S   +GD V+
Sbjct: 387 RLADKTFFTEEDHRTEDLQAILEALAKAAREEGGLYELIPDRKEAIFCALSEAREGDTVL 446

Query: 449 V--KS 451
           +  K 
Sbjct: 447 LAGKG 451


>gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 487

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 95/413 (23%), Positives = 155/413 (37%), Gaps = 45/413 (10%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VV++T + A    +       IP+     +L  L +L            IAI G+ 
Sbjct: 88  GADAVVISTAVHADNPEVLEARRRHIPIVPRAVMLAELMRLKQG---------IAIAGTH 138

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L++              IG  L  A     +  G F +  +   +  F
Sbjct: 139 GKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVAEADESDASF 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 193 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 250

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQN 295
                   K I  +G ++ AD +         +    V       +++V +  G H  QN
Sbjct: 251 ----PFVSKPIIRYGFAQEADVRATHVCARDGRMHFTVHRADAAPLDIVLNLPGTHNVQN 306

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMK 354
            L  + I + L         AL+ F+    R +RY    L +G   L+ + Y  +P  M 
Sbjct: 307 ALAAIAIATELEVADADIQSALAEFNGVGRRFQRYGEVPLTRGGAYLLIDDYGHHPVEMA 366

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV 411
           A I+      P  + R + V          ++    D  +VLS  +    + V+ +G   
Sbjct: 367 ATIAAARGAFP--DRRLVLVF--QPHRYTRTRDCFEDFVKVLSTVDALVLTEVYAAGEAP 422

Query: 412 LALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   D  AL R+I V       + +T+D +   + + + DGDVV+   + S G
Sbjct: 423 IVAADGRALARAIRVAGRVEPVFVDTLDEIPDALAAMVADGDVVMTMGAGSIG 475


>gi|66047328|ref|YP_237169.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500775|sp|Q4ZNZ1|MURC_PSEU2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|63258035|gb|AAY39131.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 486

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGHVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+      +  S  +D         L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQSGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 522

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 166/496 (33%), Gaps = 54/496 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA--IKGPH--YDGHDFI 57
            PL       QA    +           +S D+R ++  + FFA  +       DG  +I
Sbjct: 4   KPLLPLEVTAQASNALAWLRTNVAAAAQLSGDTRRLSRGDVFFAYVLGNDRLATDGRPYI 63

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITG 115
             A+  GAG VV   D        ++P   V  +      +A            +  ITG
Sbjct: 64  AQAIAAGAGAVVYEADGFDWPFGDAVPHLAVSRLHQLAGPIAAGWHGNPARGLAVTGITG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDV 160
           + GKT+  + L   L +     A IG+                   + +  +LA +    
Sbjct: 124 TNGKTSCSQWLARVLQATGTPCATIGTLGTGFPDALQATGFTTPDAVQLQASLATLHDAG 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE 218
              +     SH  E   +       +AV+T +   HL     + E  +AKA +F  +GL 
Sbjct: 184 ARAVAMEVSSHGLEQERVA-GTHFSVAVLTNLTQDHLDYHGSMAEYEAAKARLFRWDGLR 242

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNAD----------FQLRKWKQCS 267
              T  +N DD+    LL A + A+    +  +G    A            +    +  +
Sbjct: 243 ---TAVINRDDAMGQRLLAADAAAVVAPHVIEYGIDGPAAATVRGPRGAWLRATSVRATA 299

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +   +       E+    IG     N+L  LG         D AI AL    P EGR 
Sbjct: 300 TGTAFHIDGSFGHAEMATPMIGAFNVSNLLAVLGAALANGVAWDAAIAALRALAPVEGRM 359

Query: 328 KRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           + +  A +      L    Y   P +++  ++ L  ++    GR   V G   +   + +
Sbjct: 360 ELFGAAGHDAAQAPLAVVDYAHTPDALEQTLAALRPVAQARNGRLWCVFGCGGDRDPIKR 419

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFI 437
                +AE L+      V L+  +           A+ D +         E      L+ 
Sbjct: 420 PLMGAVAERLA----DEVVLTSDNPRSEDPQDILDAIADGMTERARGRQIEDRAAAILYA 475

Query: 438 QSSLVDGDVVVV--KS 451
                  DVV+V  K 
Sbjct: 476 VRHAAPADVVLVAGKG 491


>gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
          Length = 522

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 162/481 (33%), Gaps = 62/481 (12%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G + G      + G++ DSR + P + F A+ G H  G  ++  AV  GA  V+ +    
Sbjct: 28  GPAAGSTAGILICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTDPAGA 87

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            S+ +  +P+    D    L  +A             + +TG+ GKTTT   L   L + 
Sbjct: 88  -SLINREVPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRAA 146

Query: 134 KKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFELGMSHLGEIRF 177
                 +G+    +                +   LARM  D +     E+    L   R 
Sbjct: 147 GHRTGLLGTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHR- 205

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                       T ++  HL     +E   +AKA +F   +      +  DD +   L A
Sbjct: 206 -VDGTGFACVGFTNLSHDHLDFHGDMENYFAAKARLFRP-DFAPKAVIVVDDEYGRRL-A 262

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC------------SEQSWMEVQLQGKSMEVVH 285
            +  + ++T+    +    D +   W+                     V      +E+  
Sbjct: 263 DTAPIAVRTVSGRPEHLPPDRRP-DWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSL 321

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L+ L I+  +   V+ A   +       GR +       Q F  L+D  
Sbjct: 322 QLPGRFNLTNALLALAILVEVGIPVEAARAGIGDLAGVPGRLEL--VDAGQPFAVLVD-- 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P   +A  +V  ++ P   GR I V+G     G+   S    +    +      ++
Sbjct: 378 YAHTP---EAVATVAREVRP-DRGRLIIVIGC---GGDRDPSKRPAMGAAAAELADLAIF 430

Query: 406 LSG----FHVLALKDALPRSIHVHYSETMDGL------FLFIQSSL---VDGDVVVV--K 450
            S          +  A+   +    ++    +         I+ ++     GDVV++  K
Sbjct: 431 TSDNPRSEDPEEIVAAMLTGVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGK 490

Query: 451 S 451
            
Sbjct: 491 G 491


>gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
 gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
          Length = 515

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 162/425 (38%), Gaps = 37/425 (8%)

Query: 6   TFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  DL   +      I  +    V G+++DSR++ P + + A+ G    G DF       
Sbjct: 13  SVRDLALLVSAPADVIDDLDDVAVTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADA 72

Query: 64  GAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
           GA  V+ + D V  + +  +  PV  V+     L  +A           T++ ITG+ GK
Sbjct: 73  GAAAVLTDADGVERLRAAGVDLPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGK 132

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPV-DVDFG 163
           TTT  ++  AL ++ +    IG+    I                +   LA M   D D  
Sbjct: 133 TTTAYLVASALDALGQRTGLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTC 192

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L + R     V   +++ T ++  HL   + +E+  SAKA++F     T  +
Sbjct: 193 VMEVSSHALSQHR--VDGVLYDLSLFTNLSQDHLDFHADMEDYFSAKAQLFTPERSTRGL 250

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD +   L  +       T  +  + + AD+ +      +E +   ++  G  +++
Sbjct: 251 I-CVDDIWGRRLAEECGIP--VTTLTTIEGQTADWVVT--VDATEPARFALRGTGIELDL 305

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTL 341
                G     N  M    + +L  D +   +A+       GR ++     + +     L
Sbjct: 306 RSALPGDFNVANTAMAAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLL 365

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++AA++ L    P   GR + VLG     G+  +     +    +    
Sbjct: 366 AVVDYAHTPDAVEAALAALR---PTTTGRLVVVLGA---GGDRDRGKRHGMGRAAAGLAD 419

Query: 402 SHVWL 406
             V  
Sbjct: 420 VVVVT 424


>gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
          Length = 522

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 164/415 (39%), Gaps = 53/415 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +   V +     +PV     +L  L +L            IAI G+ GKTTT  ++
Sbjct: 102 AILPDNPEVLAARESKVPVVPRAIMLAELLRLRQG---------IAIAGTHGKTTTTSLI 152

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T  L+         IG      G    L R     +F + E   S    +      ++P 
Sbjct: 153 TSVLAEAGMDPTFVIGGRLEAAGSHAKLGRG----EFIVVEADESDASFLH-----LQPV 203

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALG 243
           +AV+T I   H+  +     ++  A  +  + L   G   L  DD+   E++ A +    
Sbjct: 204 LAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVLCVDDAHVLEIMPAIT---- 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMT 299
            K + ++G S+ A  +    +    Q        V  + + +++V +  G H  QN L  
Sbjct: 260 -KPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKIVLNLPGLHNVQNALAA 318

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQGFFTLIDESYNANPAS 352
           + + + +     + ++AL+ F   + R +RY             G FTLID+ Y  +P  
Sbjct: 319 IAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRNGSFTLIDD-YGHHPVE 377

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           M A I   +       GRR  VL         ++    D  +VLS  ++   + V+ +G 
Sbjct: 378 MAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSTADVLLLTEVYSAGE 433

Query: 410 HVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +   D  +L RS+ V       + E +D L   I S   D DVV+V  + S G
Sbjct: 434 APIIAADSKSLARSLRVLGKVEPIFVERVDELEEAIHSIARDKDVVLVMGAGSVG 488


>gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
 gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
          Length = 473

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 141/402 (35%), Gaps = 40/402 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +A+  +  +PV    D+L  L +L            + + G+ GKTTT  M+
Sbjct: 85  AIGQDNPELAAARARHVPVVRRADMLAELMRLKWN---------VCVAGTHGKTTTTSMI 135

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I   N  I         P   D+ + E   S    IR     +   +
Sbjct: 136 GSLLDAGDLDPTVI---NGGIINNYASNARPGTGDWMVVEADESDGTFIR-----LPATV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I P HL ++     + +A  +    L   G   +  D    + L  +   +  + 
Sbjct: 188 GVITNIDPEHLDHYGDFAGVRAAFDQFVANLPFYGFAAVCLDHPEVQALVGR---VTDRR 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EVVHHGIGYHMAQNMLMTLGI 302
           + ++G +  AD +        E S  ++  +   +     +     G H   N L    +
Sbjct: 245 LITYGFNPQADVRAENLDPTEEGSRFDIIFRKDDIVRLEGITLPMPGRHNVLNALAAAIV 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +    D      + F       +R    + +     I + Y  +P  + A +S    
Sbjct: 305 AREMGVPEDAIRDGFARFRGV----RRRFTEVGKYRGARIIDDYGHHPVEIAATLSAART 360

Query: 363 ISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++    GR IAV+       + +L  +F       DL  V  +Y    + + G    AL 
Sbjct: 361 VA---RGRVIAVMQPHRYTRLQQLFDAFCGCFNDADLVMVGDVYPAGEMPIEGMDKRALA 417

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           D + R  H  V   E   GL   ++  L DGDVV+   +   
Sbjct: 418 DGIARHGHRGVEVIEAWGGLSQRLRDELQDGDVVICLGAGDI 459


>gi|330950223|gb|EGH50483.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 458

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 163/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 30  ESFGAQIFIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 88

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 89  --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 136

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 137 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 190

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 191 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 246

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 247 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 307 GGNVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 362

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 363 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 422

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 423 ILLCQGAGDIG 433


>gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
 gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
          Length = 495

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 148/453 (32%), Gaps = 40/453 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           +  + +DSR I P + F A+ G   DG  FI  A+ +GA LV+   D     G++    S
Sbjct: 27  IQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALARGANLVLAQADEQRPHGTVSDIDS 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P+  +  +   L+ LA          +IA+TG+ GKTT  +++T  L  + +  A +G+
Sbjct: 87  KPIIYLASLDEHLSALAGRFYADHTNRVIAVTGTNGKTTISQLITQWLELMGERAAVMGT 146

Query: 143 YNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             N     L                 R   +       + +S  G ++     +     V
Sbjct: 147 TGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARYTAMEVSSHGLVQGRIKALPFIAGV 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + ++  HL     ++E A AK  +F          LN DD              +    
Sbjct: 207 FSNLSRDHLDYHGTMQEYAKAKQSLFTE-HDCQQAILNVDDPVGAQWATHQWPRLVGVSL 265

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                              +   +          +    IG   A N+L++L  +  L  
Sbjct: 266 YQQPETERCLWATSVSYSEQGIHLAFDGSWGVGHLHVALIGEFNASNLLLSLATLLSLGF 325

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                +   +   P  GR + +               Y   P +++ A+  L     H  
Sbjct: 326 SKPALLDTAAQLTPVLGRMELFSVPGKAKVVV----DYAHTPDALEKALCALR---VHCL 378

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422
           G+   + G   +     +     +AE  +      +  +  +  +      ++D L    
Sbjct: 379 GQLWVIFGCGGDRDTGKRPMMAAIAEQFA----DKIIFTDDNPRSESAHAIVQDMLAGLS 434

Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H   H          +  +     D++++  K 
Sbjct: 435 HRQAHVEHNRYQALQYALAHANADDIILLAGKG 467


>gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
 gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
          Length = 466

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 153/414 (36%), Gaps = 45/414 (10%)

Query: 63  KGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA  VV +T        V +  +  +PV     +L  L +L            IA+ G+
Sbjct: 63  AGADAVVTSTAVGGSNPEVLAARAARVPVVPRAVMLAELMRLKQG---------IAVAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L+         G  +    +   L     +   G  E  +    E  
Sbjct: 114 HGKTTTTSLVASILAE--------GKLDPTFVIGGRLNSAGANAKLGTGEFMVVEADESD 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P IAVIT I   H+  +      +  A  E  + L   G   +  DD     +
Sbjct: 166 ASFLNLMPVIAVITNIDADHMETYGHDFARLKQAFVEFTQRLPFYGVAAVCVDDPCVREI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQ 294
                    KTI ++G S+ A  +    + C  Q    V  + ++ +++  +  G H  +
Sbjct: 226 M----PFVSKTIVTYGLSEQAQIRAVNVQACQGQMKFTVLREDEAPLDITLNLPGDHNVR 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM 353
           N L  + + + +    +  + AL  F+    R + Y   A  +G   L+ + Y  +P  M
Sbjct: 282 NSLAAIAVATEIGVSDEAIVAALEKFNGVGRRFQHYGEVAAKEGGHFLVVDDYGHHPVEM 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGFH 410
            A ++      P     +  VL         ++    D  +VL    L  +S V+ +G  
Sbjct: 342 AATLAAARGAYPD----KRLVLAFQPHRYTRTRDCFEDFVKVLGTPDLVILSEVYSAGEA 397

Query: 411 VLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   D   L R++ V       + E M+ +   I +   DGD+V+   + S G
Sbjct: 398 PIVAADGRSLARAVRVAGRTEPVFVEDMNEMKSTILNIARDGDLVITMGAGSIG 451


>gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           Bt4]
 gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis
           E264]
          Length = 465

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 159/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +      L  K +  +G + +A  +    +    +    V  +G+  + VV
Sbjct: 216 CIDDPNVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEMPAAGGGAYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   ++    DAL R++         +  T+D +   +      GDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
 gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
          Length = 482

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 46/422 (10%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +  A   V+V +  +              IPV    ++L  L +          
Sbjct: 65  FVGHRAENAATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------- 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  +L    ++              IG  LT A     +    + +
Sbjct: 117 -HGVAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGTSRYLI 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P +AV+T I   H++ +     ++     E    L   G   + 
Sbjct: 170 AEADESDASFL--HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD     +  +      +   ++G S+ AD +    +Q   Q+   V  + +  +EV  
Sbjct: 228 LDDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDREPLEVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I +      +  ++ LS F     R + Y     +G   ++ + 
Sbjct: 284 NMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGELPVEGGSVMLVDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  + A I     +      RR+ ++         ++  + D  +VL   N+    
Sbjct: 344 YGHHPTEVAAVIKA---VRGGWPSRRLVIVYQ-PHRYSRTRDLYDDFVQVLGDANVLLLM 399

Query: 403 HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G   +   D+  L  SI         Y E    L   ++  L  GD+++ + +  
Sbjct: 400 EVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGVELAPLVKPLLRAGDILICQGAGD 459

Query: 455 CG 456
            G
Sbjct: 460 VG 461


>gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
 gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
          Length = 487

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 166/450 (36%), Gaps = 58/450 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFG 87
           R      E FF        GH      V+K A +VVV+T +  S   +       IPV  
Sbjct: 62  RLAQKGAEIFF--------GHQ--ASNVEK-ASVVVVSTAIDPSNPEIVAAKENRIPVIR 110

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             ++L  L +             IA+ G+ GKTTT  + T   S            N  +
Sbjct: 111 RAEMLAELMRYR---------HGIAVAGTHGKTTTTALTTQIYSEAGLD---PTFVNGGL 158

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
                         F I E   S    +      ++P ++++T I   H+  +    E +
Sbjct: 159 VKNAGTNARLGSSRFLIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETL 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                +    L   G   +  DD     L  +      + + ++G S +AD +L  ++Q 
Sbjct: 214 KQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQVS----RQVITYGFSDDADVRLINYRQV 269

Query: 267 SEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +QS+  VQ + ++ +++V +  G H A N    + + +    + +  + AL  F     
Sbjct: 270 GQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNFEGAGR 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  +           ++ + Y  +P  +   I      +   E R + +          +
Sbjct: 330 RFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAAR--AGWAEKRLVMIF--QPHRYSRT 385

Query: 386 QSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLF 434
           +  + D A VL   ++     V+ +G   +A  D  AL R+I         +  T++ L 
Sbjct: 386 RDLYDDFANVLDNVDVLIMLDVYSAGETPIAGADGRALCRTIRGRGKIDPVFVPTIEALP 445

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             + + + +GD+++ + +   G  +L   L
Sbjct: 446 PVLANIIQEGDLILTQGAGDVG--KLAKQL 473


>gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
 gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
          Length = 494

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 148/460 (32%), Gaps = 44/460 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVAS 77
           +P   V   S DSR I P   F  + G   DG  F   A+Q+GA   V+  D       +
Sbjct: 23  LPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGATAAVIGPDAAQQEPPA 82

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            G   + V             A       + ++I +TG+ GKTTT  ++     +     
Sbjct: 83  PGDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTTTHLIEHLALACGSPT 142

Query: 138 ACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTHL 181
           A +G+  N        A                           E+    L + R     
Sbjct: 143 ALMGTLANRWPGHSRNAVHTTPFADQLQADLAAAKAAGCSMAAMEVSSHALDQSR--VAG 200

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            R   AV T ++  HL     +E+   AKA++F      G   +N DD     L  +   
Sbjct: 201 CRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQAVVNSDDLHGRQLAQR--- 257

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           LG +   S  +  +A+  +   +  +      +      +      +G     N+L  +G
Sbjct: 258 LGDQCWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSPLVGRFNLMNLLQAVG 317

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D  ++AL  F+   GR +R     ++     +   Y   P  +  A+    
Sbjct: 318 VLLQHGLPCDGLLQALESFNGVPGRMERV---PHRSDQPAVLVDYAHTPDGLDNALQA-- 372

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD- 416
              P  EG+ I V G     G+  +S    +  + +      V  S          + D 
Sbjct: 373 -ARPFAEGKLICVFGC---GGDRDRSKRPQMGAIAAQLADELVVTSDNPRTEDPQQILDD 428

Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +P                        GD+V++  K 
Sbjct: 429 VVAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKG 468


>gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
 gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
          Length = 463

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 91/424 (21%), Positives = 158/424 (37%), Gaps = 49/424 (11%)

Query: 57  ILHAVQK--GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           + HA +   GA  VV++T        V +     IPV     +L  L +L          
Sbjct: 55  VGHAAENIAGADAVVISTAVKADNPEVIAARERKIPVVPRAQMLAELMRLKSG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++T  L+         G  +    +   L     +   G  +  
Sbjct: 108 --IAIAGTHGKTTTTSLVTSILAE--------GGIDPTFVIGGRLNAAGANARLGSGDFL 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           ++   E       + P I+V+T I   H+  +    E + SA  +    L   G   +  
Sbjct: 158 VAEADESDASFLFLSPVISVVTNIDADHMETYGHDFERLKSAFVDFLNRLPFYGVAVVCG 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKS--MEVV 284
           DD+    +  +      K I ++G S   +F        + Q   + V++ G +  + + 
Sbjct: 218 DDANIRDILPRVP----KQIITYGLSNECNFHAENIVADNGQMRFDCVRVNGTTSRLSIT 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H   N L  + + + +       +KAL+ F     R +RY   AL  G    + 
Sbjct: 274 LNTPGMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYGEVALPAGGSFTLV 333

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +   
Sbjct: 334 DDYGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLSTVDALC 389

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + ++ +G   +   D   L R++ V       + E +  +   I     DGDVV+   +
Sbjct: 390 LAEIYAAGEAPIVAADGRSLARALRVSGKVEPVFVEDIAAMPQTIMDVARDGDVVLCMGA 449

Query: 453 NSCG 456
            S G
Sbjct: 450 GSIG 453


>gi|302185268|ref|ZP_07261941.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae 642]
          Length = 486

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 163/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 511

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 158/478 (33%), Gaps = 44/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS  +     F A+ G    G  F     + GA
Sbjct: 4   SLDTLAQLSGGRVIGDAT-VEVSACGLDSSRLPEGALFAALPGTRVHGAQFARD-TKAGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            L       + +    + P+  V+D+   L  ++         + T+I +TG+ GKTTT 
Sbjct: 62  VLTDAAGLDLLTEAQETRPILVVEDIRAVLGPISAEIYGHPTRELTVIGVTGTSGKTTTS 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHI---GVPLTL------------ARMPVD-VDFGIFEL 167
            +L   L     +   IG+    I    VP +L            ARM  + V   + E+
Sbjct: 122 YLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEV 181

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R      R  +   T ++  HL     +E+   AKA++F G +      L  
Sbjct: 182 SSHALELGR--VRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAERAVLCI 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHH 286
           DD + E ++  + + G +      +   A    R+    +     + +   G +      
Sbjct: 240 DDEWGERMRGVAKSAGHEVTTVDTQGAAATISARQTATEATGAQEVALDYDGANFTFRLP 299

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N  + LG+ + +  D    +   S        G+  R    Q F  ++D  Y
Sbjct: 300 LPGEFNIANACLALGMATAVGEDPAEFL---SGVEKVAVPGRMERIDRGQDFVAVVD--Y 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              PA++ A +  L        GR   V+G     G+   S    +    +      V  
Sbjct: 355 AHKPAAIAAVLDTLRGQLEGTTGRVGIVVGA---GGDRDSSKRPIMGAAAASRADLTVVT 411

Query: 407 SG----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      ++ A+            +    +       +      GD V+V  K 
Sbjct: 412 DDNPRSEDPATIRAAVVEGARDAAPQGDIREVGSRARAIDEVVDWAEPGDAVIVVGKG 469


>gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 504

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/483 (16%), Positives = 146/483 (30%), Gaps = 48/483 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    DL   +   S   V  G+    V+ ++  +  + P   F AI+G  +DGH F
Sbjct: 1   MMPVMLLSDLASHLSLRSGPSVETGWAAAEVSAVTHRADWVTPGALFAAIRGERHDGHAF 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A ++GA   +           L            A     ++     +  ++ +TG+
Sbjct: 61  LQEAAERGAVAALGEGLPAGQHSPLPYLQVPDARAALADAAALLSGHPSRELKVVGVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-----------------LARMPVD 159
            GKTTT  +    L +  ++   + S    +                      L R  VD
Sbjct: 121 DGKTTTSWLTAALLRAGGQSTGLLSSAGYQLPDGQLRAYPAHFTTPEAPQLQGLLREMVD 180

Query: 160 --VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                 + E     L         V    A+ T ++  HL     +E+  +AK  + E  
Sbjct: 181 ARAQAAVIETSSHALTL--ERVRGVAWDAAIWTHLSQEHLDFHGTLEDYFAAKRRLIERA 238

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQ 275
                  LN DD +   L+  +         ++  ++  AD++    +  +   +   V 
Sbjct: 239 P---LAVLNLDDPWTRHLRGVAPQE-----LTYSAAQAGADWRASDLRGEAGGRASFAVD 290

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G     N L  +                L  F    G   R     +
Sbjct: 291 GPAGRFRATLPLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPG---RMETVPS 347

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDL-- 392
           +     +       P S++   + L  + P   G+  AV+G      + S+      +  
Sbjct: 348 RPGQPRVVSDSAHTPLSLE---NTLRALRPLTGGQLWAVVGSAAGGRDTSKWGPMAAVAS 404

Query: 393 --AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             A+ + L    H       +L    A     +            +  +     D V++ 
Sbjct: 405 AWADQVILTEADHRETPLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPDDTVLIA 464

Query: 450 -KS 451
            K 
Sbjct: 465 NKG 467


>gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
 gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 160/495 (32%), Gaps = 54/495 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA--IKGPH--YDGHDFI 57
            PL       QA    +           ++ D+R +A  + FFA  +       DG  +I
Sbjct: 4   KPLLPLEVTAQASNALAWLRTNVAAAAQLTGDTRRLARGDVFFAYVLGNARLATDGRLYI 63

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             A+  GAG +V   D      S  +P   V  +      +A            +  ITG
Sbjct: 64  AQAIAAGAGAIVYEADGFDWPFSDVVPHLAVSHLHQLAGPIAAGWHGNPVRGLAVTGITG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDV 160
           + GKT+  + L   L +     A IG+        L               +LA +    
Sbjct: 124 TNGKTSCSQWLARVLQAAGTPCATIGTLGTGFPGALQATGFTTPDAVQLQASLASLHDAG 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE 218
              +     SH  E   +       +AV+T +   HL     + E  +AK  +F  +GL 
Sbjct: 184 ARAVAMEVSSHGLEQERVA-GTHFSVAVLTNLTQDHLDYHGSMAEYEAAKESLFRWDGLR 242

Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNAD----------FQLRKWKQCS 267
              T  +N DD+    LL A + A+G   +  +G                 +    +   
Sbjct: 243 ---TAVVNRDDAMGQRLLAADAAAIGAPHVIEYGIDGPGAATVRRPRGEWLRATNVRATP 299

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +   +     S E+    IG     N+L  LG         D AI AL    P EGR 
Sbjct: 300 TGTAFHIDGSFGSAEMATPMIGAFNVSNLLAVLGAALANGVAWDAAIAALRALTPVEGRM 359

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           + +  A       L    Y   P ++   ++ L  ++    GR   V G   +   + + 
Sbjct: 360 ELF-GAAGGPDAPLAVVDYAHTPDALAQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRP 418

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQ 438
               +AE         V L+  +           A+ D +         E      L+  
Sbjct: 419 LMGAVAE----READEVILTSDNPRSEDPQDILDAIADGMAVRARARQIEDRAAAILYAV 474

Query: 439 SSLVDGDVVVV--KS 451
                 DVV+V  K 
Sbjct: 475 RHAAPADVVLVAGKG 489


>gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
 gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
          Length = 512

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 93/486 (19%), Positives = 174/486 (35%), Gaps = 57/486 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL    DL+ A +    G VP   V G+++  +     + F A+ G    G  +   AV
Sbjct: 11  MPLGALADLVCA-EPADAGPVPDLQVTGVTLRGQHAQAGDLFAALPGSKAHGARYAADAV 69

Query: 62  QKGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGS 116
           ++GA  V+ + D V+ I   G  ++P+         L ++A A   R      +I +TG+
Sbjct: 70  ERGAVAVLTDADGVSEIAAHGGPAVPILVHPAPRSVLGEVAAAVFGRPSEHLRVIGVTGT 129

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDV 160
            GKTTT  ++   L S  +    IG+    I                   L  A +   V
Sbjct: 130 SGKTTTTYLVEAGLRSAGRVAGLIGTVGVRIDGRAQPGGLTTPEAPDLQALLAAMLEQGV 189

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+    L   R     V   +   T ++  HL     +++   AKA + +    T
Sbjct: 190 DTVVMEVSSHALTLGR--VDGVSFAVGGFTNLSRDHLDFHPTMQDYFEAKARLVDPTSPT 247

Query: 221 GTI--FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQL 276
                 +  DD +   + A++ A       +   + +AD+ +++ +        ++ V  
Sbjct: 248 HAARSVICVDDEWGRAMAARADAP-----VTVSVTGDADWWVQEVRALDGGVQDFLAVDP 302

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G    +     G +   N L+ + ++  +    + A             G+       Q
Sbjct: 303 AGVHHALEIGLPGGYNVANCLLAVALLDAVDVSPEQAAPG---LRDATVPGRLEAVDRGQ 359

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            F  L+D  Y   P ++ A +  L +      GR   V G     G+  Q     +  V 
Sbjct: 360 PFLALVD--YAHKPGALAAVLQTLRE---QCAGRLAVVFGA---GGDRDQGKREPMGRVA 411

Query: 397 SLYNISHVWLS----GFHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVV 447
           +      V       G     ++ A+ R      ++T++        +       +GD+V
Sbjct: 412 AELADLVVVTDDNPRGEDPAVIRAAILRGASG--AQTVEIGDRRAAIVHAVQWAREGDIV 469

Query: 448 VV--KS 451
           ++  K 
Sbjct: 470 LIAGKG 475


>gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
 gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
          Length = 487

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 151/413 (36%), Gaps = 43/413 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +    +  IP+    ++LG L             T IA++G+ GKTTT  M
Sbjct: 106 AAIRRENAELMEAVAKKIPMLTRAELLGQLMANY--------KTPIAVSGTHGKTTTTSM 157

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G  +  I V   L  +  ++  G   + ++   E         P 
Sbjct: 158 ISHVL--------LAGDTDPTISVGGILQAIGGNIRVGSSGIFVTEACEYTNSFLHFFPK 209

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  I   HL  F  +E+I  +  +    L   GT+ +N +   ++ +          
Sbjct: 210 ISIILNIEADHLDFFKDLEDIRHSFHQFAALLPSDGTLIINGEIDQYQEICEGLDC---- 265

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
           ++ ++G S   D+  +      +     +    GK    +V    G H   N L  +   
Sbjct: 266 SVVTYGMSPEFDYSAQNITYDEKGRVAFDFFRNGKLDTHIVLSVTGDHNVSNALSAIATA 325

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L   +DT  K L  F    G  +R+         T++D+ Y  +P  +KA +      
Sbjct: 326 ELLGLSMDTIQKGLLSFS---GTDRRFEYKGTIDDVTIVDD-YAHHPTEIKATLKAAKHY 381

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  E   LS + H+ LA++ +      +   G    AL
Sbjct: 382 PHRKLWCVFQPHTYTRTKAFFQEFAE--ALSHADHVILADIYAARETDTL---GVSSEAL 436

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            DA+       HY  +   +  F++ +   GD+V+   +      ++   LL+
Sbjct: 437 SDAIRSLGTDSHYFPSFAEIETFLKENWNAGDLVLTMGAGDV--VKIGEDLLK 487


>gi|330895226|gb|EGH27564.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 486

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 163/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
          Length = 490

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 145/393 (36%), Gaps = 26/393 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++GI+ DSR   P   F A++G H DG  +I  A  +GA  V++  D   +         
Sbjct: 25  IHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQGAAAVLLEADPGFTPPP-DATYL 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D   AL ++A A   R  A I AITG+ GKT+T E L    +        IG+    
Sbjct: 84  VAADARAALARIARALTPRVPAHIAAITGTNGKTSTAEFLRQIWTVQALPAGTIGTLGAV 143

Query: 147 IGVPLT--------------LARMPVDVDFGIFEL---GMSHLGEIRFLTHLVRPHIAVI 189
              PL               +A +      G+  +     SH  E R L  L  P+ A  
Sbjct: 144 APCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEHVAIEASSHGLEQRRLDGLA-PYAAGF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           + +   HL      E   +AK  +F+  L + G    N D         ++ A     + 
Sbjct: 203 SNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIAAFNADMDDATCAALRAIAARRGLVL 262

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                +    +L   +       + V     + E+    +G     NML+   +      
Sbjct: 263 RTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREMEVPLVGRFQVDNMLLACAMAGRDEG 322

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D A+  L   H   GR +R    L+ G    +D  Y   P +++    +L  + PH  
Sbjct: 323 AADHAVSLLPRLHGVRGRMER-AAVLDSGAAAYVD--YAHTPDAIE---RLLCSLRPHTP 376

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           GR + V+G   +     +    ++A  L+   I
Sbjct: 377 GRLVIVMGAGGDRDRGKRPVMGEIATRLADRVI 409


>gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
 gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
          Length = 490

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 153/450 (34%), Gaps = 48/450 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N I  DSR +   +A   +     D   +I  A++K A LV+   +  A           
Sbjct: 28  NRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEKRAVLVIGEIEYSAHN------YCR 81

Query: 88  VDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V D     A               +I +TG+ GK++    +   L+ ++ + A +G+   
Sbjct: 82  VSDVMTFAASVLNHELGSPSQHMDVIGVTGTNGKSSIVFYVAQLLTELRHSCAVMGTLGY 141

Query: 146 HIGVPLTLARMP---------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                L    M                 D      E+    L + R     V  + A+ T
Sbjct: 142 GFWNDLKPTGMTTLPLPRLHQALADVKKDCKAIAMEVSSHGLHQKRL--SGVAFNGAIFT 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     ++    AK  +F+         +N DD + + L ++  +      YS+
Sbjct: 200 NLSRDHLDYHGTMDAYFDAKRLLFKE-PGLQWAVINQDDDYGKKLLSEPVSYSS---YSY 255

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  + +D      +       + ++  G+  EV    +G   A N   ++  V  +  D 
Sbjct: 256 GTDEKSDLHFCITRTTDTGQQLALRFHGQEQEVFLPLLGEFNAYNAAASVLSVIAMGFDF 315

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +A KA++   P  G   R     +      +   Y   P +++    VL     H +G 
Sbjct: 316 SSACKAVTALRPVSG---RMELIDSNDSQPNVLVDYAHTPDAVE---QVLKSARKHCKGN 369

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSE 428
            + ++G   +     +          ++     V L+  +  +   +  L   +     E
Sbjct: 370 LVCLVGCGGDRDRGKRPLMAQ----AAINFADSVLLTSDNPRSESPEQILADMVQGLKKE 425

Query: 429 TMDGL--FLFIQSSL---VDGDVVVV--KS 451
               L     IQS++      D++V+  K 
Sbjct: 426 VPSELDRKQAIQSAILNAKSDDLIVIVGKG 455


>gi|162449936|ref|YP_001612303.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
 gi|189082502|sp|A9FI59|MURC_SORC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161160518|emb|CAN91823.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 144/397 (36%), Gaps = 37/397 (9%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV G  ++L  L ++            +AI GS GKTTT  ++   L +           
Sbjct: 91  PVIGRAEMLAELMRVKYG---------VAIAGSHGKTTTTSLVATVLRAAG--------L 133

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           +  + V   +A +  +   G  +L ++   E       + P IAV+T I P HL ++   
Sbjct: 134 DPTVVVGGKMAALGTNARLGAGDLLVAEADESDGSFLRLTPTIAVVTNIDPEHLDHYGTH 193

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I  A  E    +   G   L  D    + L  +      +   ++G S  +D+  R  
Sbjct: 194 ERIKDAFVEFAARVPFYGLAVLCLDHPHVQDLLPRIP----RRHVTYGVSPQSDYSARGI 249

Query: 264 KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +    ++      +G+ +        G H   N L T+ +   L   +D   +AL+ F  
Sbjct: 250 QFRGLETSFNAYRRGEPLGGFTVKMPGAHNVLNCLATIAVADELEVPLDVTKQALATFGG 309

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM- 381
                +R+    + G  T+ID+ Y  +PA ++A I    +  P  + R +          
Sbjct: 310 VA---RRFTVVGSIGGVTMIDD-YGHHPAEIRATIDAARRAFPGEDHRVVVAFQPHRHTR 365

Query: 382 -----GELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGL 433
                 E +++F+  D+  V  +Y      + G     L  ++    H    +      L
Sbjct: 366 TRDLFDEFTRAFNQADVLLVTDIYAAGEPPIPGVTAERLVQSIREHGHHDARFIADKTDL 425

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              ++     GDVV+   +        +  L     A
Sbjct: 426 PEALEKIARPGDVVIALGAGDVN--ACVRGLKARLEA 460


>gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 505

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 160/463 (34%), Gaps = 49/463 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              VN I++DSR +A    F A+KG   DG  FI  A+Q GA  ++   D +A  G + +
Sbjct: 29  DCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFIDTAIQAGAVAIIAEADGIAQDGDIVL 88

Query: 84  P----VFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +  + D+   L+ +          +  + A+TG+ GKTT  ++L    + I    
Sbjct: 89  QDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALYAVTGTNGKTTISQLLAQWANLIGYKA 148

Query: 138 ACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             +G+  N                I +  TLA +     DF   E+    L + R     
Sbjct: 149 GVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGLVEQGADFAAMEVSSHGLVQGRVRD-- 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSH 240
           +    ++ T ++  HL     ++  A AK  +F      G   +N DD+   E L    H
Sbjct: 207 LHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE-HDAGVPIINADDAVGAEWLHDLPH 265

Query: 241 ALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A+ +     +            + +  ++   +         +     +G     N+L+ 
Sbjct: 266 AVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAFDSSWGQGKFTAPLVGSFNVTNLLLA 325

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  +      +   +   S      GR + ++         ++   Y   P +++ A+  
Sbjct: 326 LATLLATNHSMAELLAKASQLQAVIGRMEVFQDT----DKAMMVVDYAHTPDALEKALQA 381

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L     H +G+   + G   +     +    ++AE L+      + L+  +  +      
Sbjct: 382 LR---VHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLA----DQIILTDDNPRSEDPKVI 434

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   L                    +     D+++V  K 
Sbjct: 435 VADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILVAGKG 477


>gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii
           DSM 519]
 gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii]
          Length = 516

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/492 (17%), Positives = 168/492 (34%), Gaps = 63/492 (12%)

Query: 4   LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +     LL+ I+    +  +     + GI+  S  +   + FF IKG   DGH ++L A 
Sbjct: 1   MMDVASLLKGIEILEENRPLSHDHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAK 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGK 119
            KGA   VV +       ++ IP + V D     AL              +I IT + GK
Sbjct: 61  NKGAVGAVVESIQ----DNIDIPQYLVSDARHSLALCACNFYNHPSKFMKMIGITATNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARMPVD-VDFG 163
           TTT  M+   L +       +G+                   + +   + RM  + +   
Sbjct: 117 TTTAFMIDNILENNNFKTGLVGTVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLTHV 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+  S + E+  +  +    I +   I+  H+      E   + K+ +    +K    
Sbjct: 177 TMEVSSSAI-ELDRIAGI-DYDIVIFNNISREHIDLHETFENYVALKSSLITNAKKGSWA 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQ------- 275
            LN D      L  K+ A     + ++G  + NA    +     S +    V+       
Sbjct: 235 ILNMDCEEAASLVNKTEA----NVLTYGVNNDNAMILCKNLDLSSGRGKFTVEISKLFSI 290

Query: 276 ----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                  +S E+     GYH   N +  +    I    +D   ++   F   E   +R+ 
Sbjct: 291 NGYLYMNQSFEISLSVPGYHSVYNAMAAIAAALICKVPIDVIQESFLNFKGVE---RRFE 347

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                 F  +  + + AN  ++   +  L+ +  +      A+ G    +     +    
Sbjct: 348 FIYENDFKII--DDHFANAGNIDVTMETLNFMKYNKLHLVYAIRGSRGPIVNNENA--QA 403

Query: 392 LAEVLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMD------GLFLFIQSSL--- 441
           +       N+S +           KD +       +SE ++       L+  +  ++   
Sbjct: 404 IVTWAKKLNLSEIIATKSADYTTEKDIVTDEEEAVFSEIINSSKLKLELYEHLSDAIGEA 463

Query: 442 ----VDGDVVVV 449
                + DV+++
Sbjct: 464 LNRAKEDDVILL 475


>gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
 gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 447

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 148/415 (35%), Gaps = 48/415 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      +      SIPV    +   AL ++    R       IA+ G+ GKTTT  M+
Sbjct: 68  AIPKTNPELLEARRRSIPVIPRAE---ALARILAEGRG------IAVAGTHGKTTTTSMI 118

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +L ++     A +G   N IG  +   R     D  + E   S    +R     + P 
Sbjct: 119 AHSLRALGENPTALVGGELNDIGSNVIFGR----EDLIVAEADESDRSILR-----LHPQ 169

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AVIT I   H   ++ +EE+    A    GL   G + L  DD     L   +      
Sbjct: 170 AAVITNIEYDHPDFYASLEEVVETFARFVAGLPPEGHLVLCADDPRCRRLAELAPC---- 225

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + ++G S   + + R     S  S++  +   K  EV     G H   N L   GI   
Sbjct: 226 PVTTYGLS-GGELRAR---VLSPGSYLLFEGARKRGEVSLGVYGRHNVLNSLAAAGIARW 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D   A + L  F    G  +R++    +    ++D+ Y  +P  + A + V    + 
Sbjct: 282 LGHDPLEAARTLGSFG---GVRRRFQLKGERSGVRVVDD-YAHHPTEIMAILDVARATAA 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA------LKD 416
             EGR IAV          ++  + +        +   ++ V+ +G           + D
Sbjct: 338 -PEGRIIAVF--QPHRYSRTRKLYREFGRAFGRADAVVVTEVYGAGEMPQPGVSGKLVVD 394

Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           A+  +     V+Y    + L   ++      D V+   +      R    LL   
Sbjct: 395 AICETSDRPEVYYVPDQEALPEVLRMISGPRDTVITLGAGDI--SRAGEELLARL 447


>gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 734

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 161/451 (35%), Gaps = 24/451 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L + +    +       +   +   + I P  A+FA            + A +K
Sbjct: 293 ITTVGKLCEILNAE-LRNAADVPITSFAFGKQKIKPGCAYFAADKET------AVAAFEK 345

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +++    +        IP   V ++  AL++ AV  +       +A+  S  K    
Sbjct: 346 GASVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKINPL 399

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   LS+  +T   I   NN+  +   +       +  +  +   + G +  ++    
Sbjct: 400 SMIEQMLSNKMETVHSISVTNNYNSMLHAMFASTPKTEAAVINVSCVNGGNVERVSQTAN 459

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A++T+   +         E+   K ++  G+ ++G + +N DD     +        
Sbjct: 460 FDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQD-- 517

Query: 244 IKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I + G     AD+     +    +   ++     +  +  +    H     L T  +
Sbjct: 518 ---IITIGVDNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATFAL 574

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+       I A+  + P  G         N+    +I +  N    S+  A+  L  
Sbjct: 575 GEIMGIPPKQIIPAIEKYRPSTG----LTTVRNERGIYVISDFENEAVESVGTALKELCT 630

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRS 421
           +    + RRIAVL ++ +  E     +  +  +++  ++      G     L K A  +S
Sbjct: 631 MPLSPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADLKS 690

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             V    T   L  F++ +L + D V+ K S
Sbjct: 691 KFVIKLNTRQALTEFLKLNLRNNDAVLFKGS 721


>gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
 gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
          Length = 481

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/391 (18%), Positives = 142/391 (36%), Gaps = 44/391 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACI 140
           +P+    ++L  + +             IA+ G+ GKTTT  ++   L       T+   
Sbjct: 103 VPIVPRAEMLAEIMRYR---------HGIAVAGTHGKTTTTSLIASVLGEAGLDPTFVIG 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N+      T A++     + + E   S    +        P I+V+T I   H+  +
Sbjct: 154 GKLNS----AGTNAQLGGS-RYLVAEADESDASFLHLT-----PVISVVTNIEADHMDTY 203

Query: 201 S-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258
              IE +     +    L   G   +  DD F + +  +      + I ++G    +AD+
Sbjct: 204 GGDIERLKQTFVDFLHNLPFYGVAVMCVDDGFVQEIIPRIS----RAIITYGIDNPDADY 259

Query: 259 QLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    +    ++   V+  G    ++V     G H  QN L  + + +    D     + 
Sbjct: 260 RAENIESDGLRTRFVVRRPGGRSDLDVELKMPGRHNVQNALAAIAVATDEGVDDAAICRG 319

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F     R + Y     +     + + Y  +P  ++A I       P    RR+ +L 
Sbjct: 320 LAGFAGVGRRFQVYGDYSTRKGTVTLIDDYGHHPTEVEAVIRAARDAWPD---RRLVMLY 376

Query: 377 DMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH-- 425
                   ++  + D   VLS          Y+     + G    AL  +L +   V   
Sbjct: 377 Q-PHRYTRTRDLYEDFVRVLSEVDGLLLMDVYSAGEPAIPGADGRALCRSLRQRGSVEPL 435

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + E    +   + ++L DGD+++ + +   G
Sbjct: 436 FVEENGEIEALLANTLQDGDLLITQGAGDIG 466


>gi|71735898|ref|YP_276229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|109892721|sp|Q48EF9|MURC_PSE14 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71556451|gb|AAZ35662.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322449|gb|EFW78542.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330082|gb|EFW86069.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874984|gb|EGH09133.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 486

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 164/431 (38%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A IS +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVSAVISAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
 gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
          Length = 487

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 147/408 (36%), Gaps = 36/408 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI  DSR+ +    F A+ G  + G DF+  AV +GA  ++ + +M        I
Sbjct: 21  DAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASGIIADEEMNLPD---HI 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V DV      +A+      K     +A+TG+ GKT+T ++L   L  + +  A +G
Sbjct: 78  GLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTSTVQLLAQLLGELDQAAATVG 137

Query: 142 SYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +    + +                    +V +   E     L + R     +   
Sbjct: 138 TLGFQLPTGFSPSSNTTPDVVEIHRFLASAAAQNVRWAALEASSHGLVQHRLT--GLNIT 195

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A IT I   HL     + E  +AKA+I   L     + L+ D+     L+ +  A    
Sbjct: 196 TAAITNITQDHLDYHGTMTEYIAAKAQILA-LSGLRAVVLDLDNPEVRALRPQVPANVQV 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             ++ G+  +A   +   +  ++ +   V+L G    +    +G    +N L  L ++  
Sbjct: 255 LGFTLGEVADA-DAVVVAQYDADGTTATVRLDGFEYRLRLPLVGEFYLRNTLTALFMLRA 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  + A        GR +R     +      +   Y   P ++   + VL    P
Sbjct: 314 EGLRFEDLVAAAGRLRGVPGRLERVGLDSD----VAVYVDYAHTPDAIARVLQVLR---P 366

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             +     V G     G+  +S    +    +      V L+  +  A
Sbjct: 367 TVKNDLWVVFGC---GGDRDKSKRPLMGRAAAE-GADWVVLTSDNPRA 410


>gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
 gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
          Length = 496

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 167/480 (34%), Gaps = 56/480 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               LLQ ++   +       +  +  DSR  A    F  I G   DGH F      KGA
Sbjct: 4   NLKTLLQGLEYEILQGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAPEVASKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
             ++V T +    G   + V  V++   AL  ++         K   I ITG+ GKTTT 
Sbjct: 64  AALIVETAVDVPAG---VTVVKVENSRRALALISAEWFDHPAKKLKTIGITGTKGKTTTS 120

Query: 124 EMLTIALSSIKKTYACIGSYNNH-----IGVPLTL-----------ARMPVDVDFGIFEL 167
            M+   L++       IG+         I  P T              +   +D  + E+
Sbjct: 121 YMVQSILNAAGHKCGLIGTIETITGKRVIPSPNTTPISYLVNEYFAEMVEAGLDSVVMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
               L   R     +     + T +   H+        E+  ++K ++F+         +
Sbjct: 181 SSQALKYDRVT--GIHFDFGIFTNLGQDHIGPNEHEDFEDYLASKKKLFDQCT---IGIV 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SME 282
           N DD  F+ +   +    ++   ++G ++ A  +        +  ++ ++ Q +   ++ 
Sbjct: 236 NRDDKLFDRIVEGAACSKLE---TYGFAEEASLRATDAMMLCKPGYLGIRYQTEGLVNIP 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G     N L  + +        +  +KAL     K     R         FTL+
Sbjct: 293 VEVDIPGKFTVYNSLAAIAVCHHFGVTEEEIMKALPQARVKG----RVEMVKVSDKFTLM 348

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  ++++ +S L +  P    R + + G     G   +     + EV       
Sbjct: 349 ID-YAHNAMALESLLSTLREYHP---ARLVCLFGC---GGNRDRERRFSMGEVSGKMADF 401

Query: 403 HVWLSG----FHVLALKDALPRSIH---VHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
            +  S         A+ D +   I     HY+  +D      +   +   GD++V+  K 
Sbjct: 402 TIITSDNPRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIVLAGKG 461


>gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 459

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 140/364 (38%), Gaps = 33/364 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T IAI+G+ GKTTT  M++  L          G  +  I V   L  +  ++  G
Sbjct: 107 MRNYDTPIAISGTHGKTTTTSMVSHIL--------LEGDCDPTISVGGILPAIHGNIRVG 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  ++   E         P I+VI  +   HL  F  I++I  +  +  E L   GT+
Sbjct: 159 NSETFITEACEYTNSFLSFFPKISVILNMDADHLDFFKDIDDIRHSFRKFAELLPADGTL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSM- 281
            +N D   +E +  +        + ++G   +AD+                V  +GK + 
Sbjct: 219 IINADTPEYETITRELPC----NVLTYGLEHDADYTAADITWDKYGHPSFSVLFRGKKIG 274

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +  +L    D  +K L  F    G  +R++     G  T+
Sbjct: 275 SYYLRVPGIHNVSNALAAIAVGRLLDLPNDVIVKGLGSFT---GTDRRFQYKGEIGGITI 331

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ID+ Y  +P  ++A +                PH   R  A+L +  +   L+ + H+ L
Sbjct: 332 IDD-YAHHPTEIEATLHAAKNYPHQKVWCVFQPHTYTRTKALLPEFAK--ALTLADHVVL 388

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           A++ +     ++   G     L+  +        Y  T D +  F+  S   GD+++   
Sbjct: 389 ADIYAARETDNL---GISSQDLQKQIQELGTPCEYFPTFDEIESFLLKSCAHGDLLITMG 445

Query: 452 SNSC 455
           +   
Sbjct: 446 AGDV 449


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 161/420 (38%), Gaps = 42/420 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTT 121
           +GA  +VV+T +          V    D+    L++  + A L ++   IA+ GS GKTT
Sbjct: 67  RGADAIVVSTAIPYDNPE----VIAAWDLRIPKLHRSDINAALVNEYDGIAVAGSHGKTT 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+ + L     +   I      +    T A++     + + E   S    ++     
Sbjct: 123 TTSMIGVTLDRASVSPTVI--VGGEVPDLGTNAKLGTS-RYLVSEADESDGSFLK----- 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RPHIAV+T +   H+ ++  +E+I  A       ++  GT  L Y++     L A++  
Sbjct: 175 LRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVLCYENEILRRLGAET-- 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
              +T+ S+     AD++    + C       V  +G ++  +  H  G H   N L  +
Sbjct: 233 --DRTVVSYAIDAAADYRAADIETCGSVISFTVFERGTALGRISLHIPGRHNVLNALACV 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +   D D    AL+ FH   G  +R++    +    ++D+ Y  +P  + A ++  
Sbjct: 291 AVARLAGLDFDRIADALAHFH---GAKRRFQTKGKERGIWVVDD-YAHHPTEIAATLAAA 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHVWLSGFHV 411
            Q  P   GR + V          +Q    +            +  +Y      + G   
Sbjct: 347 RQTEP---GRLVCVF--QPHRYSRTQLLRAEFGGCFAAADLLLLTDVYAAGEAPIPGISG 401

Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRLINLLLE 466
             L + + R       Y      L  ++   +  GD+V+   + +        L+  L E
Sbjct: 402 ETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGDLVITMGAGNI-LEVGEELVARLKE 460


>gi|290969172|ref|ZP_06560697.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780678|gb|EFD93281.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 464

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 147/413 (35%), Gaps = 41/413 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V+T +              +  L  L++      + S    IA+ G+ GKTTT  
Sbjct: 69  AETVIVSTAIHPDNAEW---QAARERHLPILHRSDALVHIMSWGKAIAVAGAHGKTTTSS 125

Query: 125 MLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ML              IG   +++    TL   P    + I E   S    ++       
Sbjct: 126 MLGQVFIEGRLHPTIVIGGEVDYLHSNSTLGTGP----YVIAEADESDGTFLKE-----H 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHAL 242
           P IAV+T I   H+ ++  +  + +A  +  + L+   G   L +D+     L ++    
Sbjct: 177 PAIAVVTNIDADHMDHYGSMAHVIAAFKQFIQRLDPQDGMAVLCFDNEHIRRLASQV--- 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
             +T  S+G +++A++  +       + + +V  +   +  V     G H   N L T+ 
Sbjct: 234 -GRTYISYGFAEDAEYTAKNLYYKEGKHYFDVYRRQVLLGTVCLQVPGRHNVLNALATIA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +             AL  FH   G  +R++     G   ++D+ Y  +P  +KA ++   
Sbjct: 293 VSLHCGLPFAEIAAALCRFH---GAKRRFQTKGYVGTIRVVDD-YAHHPTEIKATLAAAG 348

Query: 362 QI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            +          PH   R   +L         +   + D+  V  +Y      + G    
Sbjct: 349 DMGTHRVVCLFQPHRYSRTQLLLEQFG-----TAFSNADILVVTDIYGADEDPVPGVTGR 403

Query: 413 ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            + D +         Y    + +  F+Q      D+++   +     YR+   
Sbjct: 404 LIVDKIKEKTGKSAVYIPRKEDILPFLQKEARPHDLILTMGAGDI--YRIGEA 454


>gi|299139506|ref|ZP_07032680.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298598434|gb|EFI54598.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 458

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 154/416 (37%), Gaps = 45/416 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V    +  IPV    ++L  L +L            IAI G  GKTTT  M
Sbjct: 72  SAVAKDNPEVLEARARKIPVIQRAEMLAELMRLKYG---------IAIAGMHGKTTTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+         G+ +  + V   +  M  +   G  +  ++   E       + P 
Sbjct: 123 VAAVLAG--------GALDPTVVVGGRVDAMGSNARLGRSQYLVAEADESDRSFLKLSPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   H+  ++ + ++     E  + +   G I    D+     +  +      +
Sbjct: 175 LAVVTNLDREHMDTYADLADVERVFVEFMDRVPFYGAITACVDNEMLRAILPRV----TR 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            IY++G+S +ADF+LR  +   +  +  EV  +G  +     H  G H   N    + I 
Sbjct: 231 RIYTYGESPDADFRLRVLRPAPDCHATFEVNTRGLVLGPFNLHVPGRHNLLNATAAVAIG 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L    +     L+ F   +   +R++    Q   T++D+ Y  +P  ++A +    + 
Sbjct: 291 VQLGIPPEKIAAGLASFRGVD---RRFQTKGVQNGVTVVDD-YGHHPTEIRATLQAAREC 346

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R   +L D       + S      +VL +Y  S   + G    +L
Sbjct: 347 GYGRVLVLFQPHRYTRTRDLLEDFTTAFGDADSL-----QVLDIYAASEQPIPGVSGESL 401

Query: 415 KDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + +       V Y+ +M+     +      GD+V+   + +        +LLE  
Sbjct: 402 AEKIRAASGGIVAYAGSMEEAVERLARDARPGDLVLTLGAGNVSLA--GAMLLERL 455


>gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 517

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 157/488 (32%), Gaps = 50/488 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L +   G  IG      V+   ++S ++ P   F A+ G    G  F    
Sbjct: 1   MTTSTTLKRLAEISGGTVIGDA-STSVSSCGLNSAALPPGGLFAALPGTRVHGARFAAD- 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
            +  A L       + +      P+  V+D+   L  ++    +    K TI+ +TG+ G
Sbjct: 59  TEAAAILTDAEGKRILNDAGEKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDF 162
           KTTT  +L   L     +   IG+    I        +                   V  
Sbjct: 119 KTTTSYLLEAGLLHAGYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTH 178

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L   R      R  +   T ++  HL     +E+   AKA +F+G +    
Sbjct: 179 VVMEVSSHALSLGR--VQGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADR 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQL----Q 277
             +  DD +   +  ++ A  +  + +  +  +AD   R+   + +    +E+ L     
Sbjct: 237 SVICVDDEWGRRMAQRAAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEH 296

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             + E      G     N  +  G+ + +  +    ++           G+  R    Q 
Sbjct: 297 AGTFEFRLPMPGTFNIANAALATGMAASIGIEPQVFLEG---VEKVAVPGRMERVDRGQD 353

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   PA++ A +  L        GR   V+G   +     +          +
Sbjct: 354 FVAVVD--YAHKPAAIAAVLETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMG----AAA 407

Query: 398 LYNISHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                 V ++  +              A       +  +    +       + +    GD
Sbjct: 408 AKGADLVVVTDDNPRTEDPASIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGD 467

Query: 446 VVVV--KS 451
            V+V  K 
Sbjct: 468 AVIVVGKG 475


>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
           L2-63]
          Length = 488

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 174/479 (36%), Gaps = 51/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL  ++    G +    ++ I  DSR +    AF  +KG   DGH +   AV+KG
Sbjct: 1   MKLKDLLINVEYTVQGNL-NTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYAKSAVEKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
           A  +V++  +   + S  + V  V+D   AL+   +        +   +AITG+ GKTTT
Sbjct: 60  ASALVISDSLDFEVPS-DVAVVKVEDTRYALSLMSIEFFGHPEDELYTVAITGTKGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELG 168
             M+             IG              +      +     R  ++       + 
Sbjct: 119 TAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDNTTPESYIIQKSMRDMINAGCKAMVIE 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
            S +G        +   + + T  +  H+       + E    K+ +F   +       N
Sbjct: 179 ASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKDLAEYLYCKSLLFRQCK---FAAAN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            DD  ++ +          ++ ++G + NAD + +     SE  ++ V  + + ++ +  
Sbjct: 236 IDDPAWKDITKDFKG----SVLTYGFADNADLKGKNAHLLSENGFVGVHFETEGIKNLSV 291

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G   A N L  +  VS      D  I         +GR +R     N   +TLI 
Sbjct: 292 DVDIPGKFNAYNALAAISAVSFFDEIEDQMIIDALKVAKVKGRVERVPVPYN---YTLII 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--------EMGELSQSFHIDLAEV 395
           + Y  N  SM+  +  L Q +PH   R I + G           EMGE S     DL+  
Sbjct: 349 D-YAHNALSMENVLETLRQYNPH---RLITMFGAGGNRPKVRRYEMGETSGRL-SDLS-- 401

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   + S        +  +K  L ++   +           +   +  DGD++V+  K 
Sbjct: 402 VVTEDNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDGDIIVLAGKG 460


>gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 138/363 (38%), Gaps = 31/363 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T +AI+G+ GKTTT  M++  L          G  +  I V   L  +  ++  G
Sbjct: 115 MRNYDTPVAISGTHGKTTTTSMVSHIL--------LAGDCDPTISVGGILPAIGGNIRVG 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  ++   E         P I++I  +   HL  F  I++I  +     E L   GT+
Sbjct: 167 NSETFVTEACEYTNSFLSFFPKISIILNMDADHLDFFKDIDDIRHSFRRFAELLPADGTL 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG-KSM 281
            +N D   +E +           + ++G   +AD+Q           +   V   G K  
Sbjct: 227 IINADTPKYEDIIRDLPC----NVITYGLEHDADYQAADITYDKYGHASFSVLRNGVKVG 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +  +L    +  IK L  F    G  +R++        T+
Sbjct: 283 SYYLKVPGIHNVSNALAAIALGHLLGLSEEVIIKGLGSFT---GTDRRFQYKGEVAGVTI 339

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +D+ Y  +P  ++A +                PH   R  A+L +  +   LS + H+ +
Sbjct: 340 VDD-YAHHPTEIEATLHAAHNYPHKKLWCVFQPHTYTRTKALLPEFAK--ALSLADHVVV 396

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           A++ +      + +S   +      L       Y  T D +  ++ S+  +GD+++   +
Sbjct: 397 ADIYAARETDTLGISSEDLQKRIQEL--GTPCEYFPTFDEIENYLLSNCQEGDLLITMGA 454

Query: 453 NSC 455
              
Sbjct: 455 GDV 457


>gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 526

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 153/460 (33%), Gaps = 46/460 (10%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L +   G  I    P   V  I ++++++     F  + G H  G  F      
Sbjct: 1   MATLQELAEISGGRLIRTDDPDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQFAD---S 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120
             A  V+ + D V  +    +P+  VDDV   L +++ A         T+I ITG+ GKT
Sbjct: 58  SSAAAVLTDHDGVEKVTREDLPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGI 164
           TT  M+  AL     +   IG+    I      + +                   V   +
Sbjct: 118 TTSYMVEAALLHHGISTGLIGTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--T 222
            E+    +   R L       +A  T ++  HL     +E+    KA +F+        T
Sbjct: 178 MEVSSHAIALGRVL--GTHFSVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAET 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---DFQL--RKWKQCSEQSWMEVQLQ 277
             +  DD++ + L          +  +  +   +   D             Q+       
Sbjct: 236 SVVCIDDAWGQRLATMLPHPFTVSTEAASEHDASLQPDVWAGPSSVMDNGVQTAELYGFG 295

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              M +     G     N ++ +G++       + AI+           G+  R    Q 
Sbjct: 296 ANEMTLHIPMPGRFNVANAMLAMGLLVKTGMKAEDAIEG---LSTVTVPGRLERIDCGQD 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   P ++ A +  L     H  GR   V+G     G+   S    +    +
Sbjct: 353 FMAVVD--YAHKPGAIAAVLDTLRA---HVRGRIAIVVGA---GGDRDHSKRPIMGREAA 404

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           L +   V ++  +  +     P SI          +   +
Sbjct: 405 LRS-DLVIVTDDNPRSED---PASIRQQVVAGAKEVADHV 440


>gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 468

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 177/443 (39%), Gaps = 55/443 (12%)

Query: 48  GPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLA 99
           G       FI H      GA +VVV++ +  +          +IPV    D+L  L    
Sbjct: 50  GARV----FIGHNASNVEGADIVVVSSAIPKANPEYIRAIESNIPVIHRADMLSLL---- 101

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPV 158
                 +    IAITG+ GKTTT  M+++ +          IG   N IG   TL +   
Sbjct: 102 -----MTPKKGIAITGAHGKTTTTSMISLIMEKNGFDPTVIIGGELNDIGGNATLGKG-- 154

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             ++ + E   S    ++     + PHIAVIT I   H+  +  +  +  A  +  + + 
Sbjct: 155 --EYLVAEADESDGSFMK-----LHPHIAVITNIENDHMDYYKNMNSMKKAFKKFIDNVN 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K G I    D+   + L  +++    K  Y+ G +  +DF  +  K     +  +V  + 
Sbjct: 208 KDGFIIFGNDNKHVQELVKETN----KEYYTVGINYPSDFMAKNVKMNGLITHFDVCFRE 263

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           K + +V  H  G H   N    + + + +  D++  I+A+  F    G  +R++   +  
Sbjct: 264 KLLGKVELHVPGLHNILNATTAIAVGNRIGIDMEGMIEAIKTF---RGVQRRFQIISDIR 320

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE---LSQSFHIDLAE 394
              +ID+ Y  +P  +KA +      +P    ++I  +           L++ F     +
Sbjct: 321 GIKVIDD-YAHHPTEIKATLRAARNCNP----KKIYAIFQPHRYTRTQLLAEEFGAAFID 375

Query: 395 -----VLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
                + S+Y+     + G     + ++L R+  +V + E  + +  +I    + GD ++
Sbjct: 376 ADEVIITSIYSAGEQPIKGVSSALIINSLKRNEKNVVFIENKEDIADYILDRAMPGDYIL 435

Query: 449 VKSSNSCGFYRLINLLLEEFPAI 471
              +      ++   + ++  A 
Sbjct: 436 TIGAGDIN--KIAYNIADKLEAC 456


>gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 463

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 159/441 (36%), Gaps = 43/441 (9%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---- 101
           I G     H+       +GA +   +         + +    V      L          
Sbjct: 31  ISGSDVSRHELTEKLASRGATVYYGHRPEHVEGADIVVHSTAVKQDNVELQAARALNIPV 90

Query: 102 -------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
                  ARL      IA+TG+ GKTTT  M+  A+          +G     +G     
Sbjct: 91  IHRSEMLARLMDDRVGIAVTGAHGKTTTTSMIAFAMEQNGLDPTFIVGGVVADLGDNAKA 150

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAE 212
            + P    F + E   S    + +     RP IAV+T + P HL ++ G  E +  A   
Sbjct: 151 GKGP----FVVAEADESDGSFLHY-----RPAIAVVTNVEPDHLEHYDGKFENLVRAYET 201

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G + ++ DD     L++ +       + ++G +++AD   R  +     S  
Sbjct: 202 FIRQIPSEGLLVMSADDDKLRELRSAARC----RVVTYGFAEDADITARHVELGDRASRS 257

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +V + GK +  +     G H   N L  + +   +    + A  ALS FH   G  +R++
Sbjct: 258 DVLVNGKFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFH---GAKRRFQ 314

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGE 383
                G   ++D+ Y  +P  ++A I+              P    R   +  +  +   
Sbjct: 315 VVAEVGDVLIVDD-YAHHPTEIRATIAAAKSTGRRIVAVFQPQRYTRTFFLFEEFAK--A 371

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             ++  + L ++ S      +       LA + A   + H  Y  T D +  ++  S+  
Sbjct: 372 FGEADEVILCDIYSPAGERKIDGVSAARLASEIARMSNPHTRYIPTHDDVIEYLVQSVRP 431

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           GD+V+   +     +++   L
Sbjct: 432 GDLVLTMGAGDV--WKVAKGL 450


>gi|330877132|gb|EGH11281.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964058|gb|EGH64318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 486

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 164/431 (38%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCVDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A IS +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVISAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +   G
Sbjct: 451 ILLCQGAGDIG 461


>gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114]
 gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114]
          Length = 487

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 148/401 (36%), Gaps = 40/401 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  + T   S     
Sbjct: 100 AAKENRIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTALTTQIYSEAGLD 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +              F I E   S    +      ++P ++++T I   H
Sbjct: 151 ---PTFVNGGLVKNAGTNARLGSSRFLIAEADESDASFLH-----LQPMVSIVTNIEADH 202

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E +     +    L   G   +  DD     L  +      + + ++G S +
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQVS----RQVITYGFSDD 258

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD +L  ++Q  +QS+  VQ + ++ +++V +  G H A N    + + +    + +  +
Sbjct: 259 ADVRLINYRQVGQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAIL 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL  F     R  +           ++ + Y  +P  +   I      +   E R + +
Sbjct: 319 TALLNFEGAGRRFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAAR--AGWAEKRLVMI 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH---- 425
                     ++  + D A VL   ++     V+ +G   +A  D  AL R+I       
Sbjct: 377 F--QPHRYSRTRDLYDDFANVLDNVDVLIMLDVYSAGETPIAGADGRALCRTIRGRGKID 434

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  T++ L   + + + +GD+++ + +   G  +L   L
Sbjct: 435 PVFVPTIEALPPVLANIIQEGDLILTQGAGDVG--KLAKQL 473


>gi|85707767|ref|ZP_01038833.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689301|gb|EAQ29304.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
          Length = 478

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 143/415 (34%), Gaps = 43/415 (10%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV ++ +  +   +        PV    ++L  L +L            +A+ G+ 
Sbjct: 67  GAAVVVTSSAVRRTNPEVAHALENRTPVVRRAEMLAELMRLKS---------TVAVAGTH 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L    +    +   N  I           D D+ + E   S    +R 
Sbjct: 118 GKTTTTSMIASLL-DCGEIDPTV--INGGIIEQYGSNARMGDSDWMVVEADESDGSFLR- 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   IAV+T I P HL ++   + +  A  E    +   G   L  D    + +  
Sbjct: 174 ----LDGTIAVVTNIDPEHLDHYGDFDGVKKAFVEFIHNVPFYGAAILCVDHPEVQAVIG 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-----QGKSMEVVH-HGIGYH 291
                  + + ++G S  AD      +     +  +V +     + + +E VH    G H
Sbjct: 230 DVR---DRKVVTYGFSLQADICGVNVRPTESGNTFDVIVRQRGEEDRRIEGVHLPMPGRH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             QN L  + +   +    +T       F     R  +            I + Y  +P 
Sbjct: 287 NVQNALAAIAVAIEMGCSDETICNGFGSFSGVRRRFTKVGTVPFPTGHATIIDDYAHHPV 346

Query: 352 SMKAAISVLSQI--SPHGEGRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNIS 402
            ++A +    +   +   EGR IAV+       + +L   F       D+  +  +Y   
Sbjct: 347 EIRAVLGAAREATEAAGVEGRVIAVMQPHRYTRLNDLMDDFQNCFNEADMVFITPVYEAG 406

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G +  +L   L    H     +   D L   +   L +GD+VV   +   
Sbjct: 407 EDPIEGVNSESLVTGLKSRGHRSAQTTPDHDDLAATLAEELREGDMVVCLGAGDI 461


>gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei B7210]
 gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
 gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
          Length = 514

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 159/480 (33%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      +VP      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRTHVVPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A  +  G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLA--NLTGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|51246749|ref|YP_066633.1| UDP-N-acetylmuramate-alanine ligase [Desulfotalea psychrophila
           LSv54]
 gi|59798231|sp|Q6AJ54|MURC_DESPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50877786|emb|CAG37626.1| probable UDP-N-acetylmuramate-alanine ligase [Desulfotalea
           psychrophila LSv54]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 158/435 (36%), Gaps = 51/435 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GA +VV ++ +      +       IPV    ++L  L +L        
Sbjct: 56  GH---QAASCAGASVVVTSSAVAEDNPEVVQAREDKIPVIPRAEMLAELMRLKTFG---- 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               IA+ GS GKT+T  ++   LS         +G   +  G    L     + DF + 
Sbjct: 109 ----IAVAGSHGKTSTTSLIGCLLSQTGFDPTIVVGGKVDSFGGNAKLG----EGDFLVA 160

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    ++     + P + V+T I   HL  ++ IE I        + +   G   +
Sbjct: 161 EADESDGSFLK-----LSPVLEVVTNIDLEHLDYYTDIEHIKETFLSFIDKIPFYGAAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD     +  +      K + ++G +  AD      +  + +S   V+  G+ +  + 
Sbjct: 216 CLDDENVAAILPQVQ----KRLITYGLTPQADVSADNLRFAAGRSTFRVRAAGEVLGEIS 271

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + I   L         AL+ F    G  +R +        T+ID+
Sbjct: 272 VFPSGTHNVYNALAAVAIGLELEIPFGKIATALASFG---GVQRRMQHKGEGKGITVIDD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-------ELSQSFHI-DLAEVL 396
            Y  +P  ++A++  + +  P    +R+ VL              E    FH  D   + 
Sbjct: 329 -YAHHPTEIRASLKAIKETWPE---KRLVVLFQPHRYSRTQALFEEFKTCFHQADCLIMT 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +Y  S   + G     L +A+      +  +   +  L   +  +L +GD+VV   + +
Sbjct: 385 DIYEASESPIEGVSTEILLEAIKAHGQRYTRHIPEIASLATEVMPNLREGDLVVTLGAGN 444

Query: 455 C--GFYRLINLLLEE 467
                  +  LL +E
Sbjct: 445 IVQAGEEICQLLGQE 459


>gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10
           bacterium 'Dutch sediment']
          Length = 475

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 157/430 (36%), Gaps = 47/430 (10%)

Query: 53  GHD--FILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           GHD   +  A V   +  V      + +  + +IPV    ++L  L ++           
Sbjct: 56  GHDPAHVQEADVVVRSSAVSPENPEIVAAKAHAIPVIQRAEMLAELMRMKYG-------- 107

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +A+ G+ GKTTT  M+   L+         IG   + +G    L R       G F + 
Sbjct: 108 -VAVAGTHGKTTTTSMVATVLAKAGLDPTVVIGGRLDALGSNAKLGR-------GEFMVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +   +  FL   + P IAV+TT+   HL  +  +++I     E    +   G+  L  D
Sbjct: 160 EADESDGSFL--KLAPTIAVVTTVDAEHLDYYRDLQQIKETFLEFINKVPFYGSAILCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
                 L         K + S+G    AD            S  +V+ +G+ + EV    
Sbjct: 218 QEHIRDLLPMVQ----KRVVSYGCHTQADLMAEGVSLTGLSSTFKVRFKGEPLGEVQLRI 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  +      AL  F    G  +R++   +     ++D+ Y 
Sbjct: 274 PGVHNVSNALAAMAVGLELDIEFAAIRTALGEFS---GVVRRFQVKGSPQDIMVVDD-YA 329

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLY 399
            +PA ++A +         G GRR+ V+            + E + +F   D   +  +Y
Sbjct: 330 HHPAEIQATLKAARD----GFGRRLIVIFQPHRYSRTQRLLPEFASAFDFADQVIITGIY 385

Query: 400 NISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-- 455
                 ++G     + D   + +   V Y E  + +   +      GD+V+   +     
Sbjct: 386 PAGETPIAGVSGRQIADGVVVRKGPKVLYVERKEEIPDRVIELARPGDLVITMGAGDIWK 445

Query: 456 GFYRLINLLL 465
              +++  L 
Sbjct: 446 AGEQIVGRLQ 455


>gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
          Length = 563

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 161/454 (35%), Gaps = 72/454 (15%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------- 72
           G VP   V G S+DSR++ P + + A+ G +  G  F   AV+ GA  V+ +        
Sbjct: 26  GPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLTDAAGAAVIR 85

Query: 73  --------------------DMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATI 110
                                  A+     +P+  VDD    L +LA        +  T+
Sbjct: 86  GQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIYGDPGADLTM 145

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLAR 155
           + ITG+ GKTTT  +L  AL ++  +   IG+    +                V   LA 
Sbjct: 146 VGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSHTTPEATDVHALLAV 205

Query: 156 M-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           M     D  + E+    L + R     V   +A+ T ++  HL     +E+  +AKA +F
Sbjct: 206 MRERGADTCVMEVSSHALDQHR--VDGVVYDVALFTNLSQDHLDYHGSMEDYFAAKARLF 263

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKS---------HALGIKTIYSFGKSKNADF-----QL 260
              E++ +  +  DD +   L  ++                          D+     + 
Sbjct: 264 TP-ERSLSGVVCVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTSTGAEVDWSVVPRRG 322

Query: 261 RKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                 S Q +  V   G +S+ +  H  G     N  +    +  L  +      AL+V
Sbjct: 323 AAVDGASGQPFHLVHRSGDRSLSLASHLPGDFNVANTAIAAVALLSLGHEPARVEAALAV 382

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR +            ++D  +   P ++  A++ L    P   GR IAVLG   
Sbjct: 383 PPSVPGRMEVVAPGGTTDPRCIVD--FAHTPDAIDVALAALR---PSTRGRLIAVLGA-- 435

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             G+  +     +    +  +   V ++  +  +
Sbjct: 436 -GGDRDRGKREAMGR-AAARHADIVVVTDDNPRS 467


>gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phytofirmans PsJN]
 gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia
           phytofirmans PsJN]
          Length = 515

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 166/457 (36%), Gaps = 48/457 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVF 86
            +  D+RS+A  +AFFA      D   FI  A+++GA  V+V  +  +     S ++ V 
Sbjct: 30  HLHADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQPEGFSGAIDPSNTLAVP 89

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            ++++ G++               + +TG+ GKT+  + ++ AL+++    A IG+  + 
Sbjct: 90  ALNELAGSIASGW-YNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAIIGTLGSG 148

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     IAV T
Sbjct: 149 LPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDIAVFT 206

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E   +AKA +F          +N DD+    L A +   G     ++
Sbjct: 207 NLTQDHLDYHHTFEAYEAAKARLFAW-PDLRAAVINRDDAAGRRLLASTQ--GHARTIAY 263

Query: 251 GKSK--------NADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLG 301
           G           +A       +  +  +   +      + EV    +G     N+L  LG
Sbjct: 264 GLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGVLG 323

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +       + A+  L+      GR +R      Q    L+   Y   P +++  +  L 
Sbjct: 324 ALLAADVPFNAAVAELAKLESVNGRMQRL-GGRLQNDEPLVVIDYAHTPDALEKTLEALR 382

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
            ++    G  I + G   +     +     +AE ++      V ++  +  +        
Sbjct: 383 PMATARGGELICMFGCGGDRDATKRPLMGAIAEKIA----DGVVVTSDNPRSEDPQAIIE 438

Query: 414 -LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
            +   +  +      E     +   I+S+  +  +V+
Sbjct: 439 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVL 475


>gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
          Length = 514

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 153/459 (33%), Gaps = 46/459 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   + F A      D   FI  A+ +GA  V+   +   + G        V
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVLYQPEGFPAAGLDPATSLAV 89

Query: 89  D--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L                  + +TG+ GKT+  + +  AL+++++  A IG+  + 
Sbjct: 90  PALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGTLGSG 149

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     +AV T
Sbjct: 150 MPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDVAVFT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      +   +AKA++F          +N DD     L A  + +G     ++
Sbjct: 208 NLTQDHLDYHRTFDAYEAAKAKLFAW-RGLHCAVVNRDDPAGRRLLA--NLVGRVRTIAY 264

Query: 251 GKSKNA-------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           G    A       +      +  +  +   V       +V    +G     N+L  LG +
Sbjct: 265 GIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVLGTL 324

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+  +       GR +R      Q    L+   Y   P +++  +  L  I
Sbjct: 325 LAADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVVDYAHTPDALEKTLEALRPI 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    G  + + G   +     +     +AE L+      V ++  +  +         +
Sbjct: 384 AQARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DKVVVTSDNPRSEEPQKIIDQI 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +    E      L         DVV++  K 
Sbjct: 440 VAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
 gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
          Length = 468

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 162/422 (38%), Gaps = 58/422 (13%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  +V +T        V +  +  IPV     +L  L +L            IA+ G+ 
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRALMLAELMRLKRG---------IAVAGTH 114

Query: 118 GKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++   L++  +  T+   G  N+        AR+    D+ + E   S    +
Sbjct: 115 GKTTTTSLVASVLAAGDLDPTFVIGGRLNS----AGANARLGQG-DYIVVEADESDASFL 169

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             L     P +A++T I   H+  +   +  + SA  E  + L   G+  L  DD+    
Sbjct: 170 NLL-----PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCSDDANVRE 224

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----MEVVHHGIG 289
           +         + I ++G +++A  +  + +    +    VQ   +      ++V  +  G
Sbjct: 225 IM----PFVSRPITTYGLNEDAQVRAYEVQPSGTRMRFNVQRTHRDTLLPPLQVELNLPG 280

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDE 344
            H  +N L  + + + L    D   ++L+ F     R           +   G FT+ID+
Sbjct: 281 LHNVRNALAAIAVATELGVSDDAIRESLAAFKGVGRRFTQTGEFPVPASHGGGTFTVIDD 340

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y  +P  M A    LS        RRI VL         ++    D   VL   +    
Sbjct: 341 -YGHHPVEMAA---TLSAARGAWPDRRI-VLAFQPHRYTRTRDCFEDFVRVLGTADAVLL 395

Query: 402 SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   L   D  AL R++ V       + E +  L   +   + DGDVV+V  + 
Sbjct: 396 TEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVMGAG 455

Query: 454 SC 455
           S 
Sbjct: 456 SI 457


>gi|330469289|ref|YP_004407032.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
 gi|328812260|gb|AEB46432.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
          Length = 510

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 149/391 (38%), Gaps = 34/391 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A   +    +A+ G+ GKT+T  M+T+               +    +  
Sbjct: 99  LRVLHRSEALAAAMTGRRTVAVAGTHGKTSTTSMVTMVFQQAGA--------DPSFVIGG 150

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            ++ +      G  E  +    E      + RP ++++T I   HL+ +  +  + +  A
Sbjct: 151 EISEVGSGAHHGTGEYFVVEADESDRSFLIYRPFVSIVTNIEADHLNTYGDLANLEATFA 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E     +  G I    DD+  + L A   A G + +Y++G+S +AD +L +    +    
Sbjct: 211 EFARLTDPDGFIITCADDAGGQRLAATLRAQG-RRVYTYGESADADLRLSEMASSARGVR 269

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               + G+S+ E      G HMA N    +    +L   +  A  AL+ F     R +R 
Sbjct: 270 YLAHIDGRSLGEFRMPVPGRHMALNSASAVLAAYLLELPLQAAEAALAAFPGVRRRFERK 329

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A       L+ + Y  +P SM  A+  L +++  G   R+ V+     +   ++    
Sbjct: 330 GVADG----VLVYDEYAYHPTSMTLALQTLREVAGEG---RLLVVFQPYRLY-RTRDLQS 381

Query: 391 DLAEVLSLYNISHVWL-----------SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQ 438
           ++AE L++     + L            G    AL +A+   +    + ++ D     + 
Sbjct: 382 EIAEALAI--ADELVLLEVFGPGEQRGPGEGSAALIEAVALPAERKVFVDSWDAAPAEVA 439

Query: 439 SSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
                GDVVV   +         L+  L   
Sbjct: 440 RRARSGDVVVTMGAPPISLMGDELLAALTAR 470


>gi|329118775|ref|ZP_08247473.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465122|gb|EGF11409.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 484

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 154/426 (36%), Gaps = 51/426 (11%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T +      +       IPV     +L  L +             IAI G+ 
Sbjct: 79  GADVVVTSTAVKKDNPEVAAALAQQIPVIPRALMLAELMRF---------KDGIAIAGTH 129

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +    L++           +    +   L     +   G  E  ++   E   
Sbjct: 130 GKTTTTSLTASVLAAAG--------LDPTFVIGGKLTASGTNARLGKGEYIVAEADESDA 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      + 
Sbjct: 182 SFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCADSEHVRAIL 241

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYH 291
            K      K   ++G  ++AD +    +    Q    V+++ K        V  +  G H
Sbjct: 242 PKVS----KPYTTYGFGEDADIRAENIESDGAQMKFAVRVRMKGHEPLDFPVTLNLPGRH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANP 350
              N L  +G+     AD     + L  F     R + Y    L  G   L+ + Y  +P
Sbjct: 298 NVLNALAAIGVALECGADTAAIQQGLQNFGGVGRRFQSYGEIPLKTGGSALVIDDYGHHP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLS 407
             M A ++      PH    R  VL         ++    D A+VL+  +   ++ V+ +
Sbjct: 358 TEMAATLAAARGAYPH----RRLVLAFQPHRYTRTRDLFDDFAKVLNTVDTLVLTDVYAA 413

Query: 408 GFHVL-ALKDALPRSIHVH------YSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYR 459
           G   L     AL R++  +      Y   ++ +   +  + L DGDV++   + S    +
Sbjct: 414 GEDPLPEDSRALARNVRAYGKVEPLYCADVNEMPAMLLDTVLHDGDVLLNMGAGSIN--K 471

Query: 460 LINLLL 465
           +   L+
Sbjct: 472 VPAALV 477


>gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 413

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 134/399 (33%), Gaps = 50/399 (12%)

Query: 85  VFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  V D   A+ +L          K  +I +TG+ GKTT   ++   L +  +  A  G+
Sbjct: 3   LVVVKDTFKAMAQLVNKYYDYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALSGT 62

Query: 143 YNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +   L  +                 +  D++  + E+    L   R     V   +
Sbjct: 63  IGFDLDGELFPSENTTCDVMTNQEMIQKALDRDIENMVLEVSSHGLSLGRLW--GVDFDV 120

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT----GTIFLNYDDSFFELLKAKSHAL 242
              T ++  HL     +E    AK  +F  L +         LN DD ++E     +   
Sbjct: 121 VTFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYERYSTMTA-- 178

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + S+G    ADF+    +  ++ +   +Q      EV    +G     N+L  +  
Sbjct: 179 --HEVISYGLETYADFKAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAAMAT 236

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      V+  +  +    P  GR ++            +   Y   P +++ AI     
Sbjct: 237 LFAKGMSVEKLVTIIKDLPPVSGRMEKVHS----DAPLSMYIDYAHTPDAIENAIQ---S 289

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD 416
           + P  E + I ++G     G   +S    +AE  S+    +V L+            + D
Sbjct: 290 VLPFKENKIIFLVGT---GGNRDKSKRPSMAEKASI--ADYVVLTTDDPRYESYDSIVND 344

Query: 417 ALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
                 H +Y+     +            GD+++   K 
Sbjct: 345 LGKGMRHGNYALIGDREEAVKHAVDVSEPGDIIIFAGKG 383


>gi|289624983|ref|ZP_06457937.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647041|ref|ZP_06478384.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488536|ref|ZP_07006566.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156877|gb|EFH97967.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 486

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGNVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 ADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +    
Sbjct: 451 ILLCQGAGDIA 461


>gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
 gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
          Length = 463

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 171/426 (40%), Gaps = 46/426 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
            DG D +++        V  +    A+     +P+    ++LG + K    A        
Sbjct: 71  VDGIDVVVYT-----AAVHPDNPEFAAAMEKGLPMLSRAELLGQMMKNYENA-------- 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A++G+ GKTTT  M+T  L +           +  I V   L  +  ++  G  EL ++
Sbjct: 118 VAVSGTHGKTTTTSMITEILLAADA--------DPTISVGGILNSIGGNIRVGGPELFVT 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I VI  +   HL  F  +++I  +     E L K G + +N D +
Sbjct: 170 EACEYTNSFLSFFPTIEVILNVEADHLDFFKDLDDIRRSFRLFAEKLPKDGILVINSDIT 229

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVV-HHGI 288
            +E +           + +FGK +++ ++  + +     +   ++ + G++++ V     
Sbjct: 230 DYEKITEGLPC----RVITFGKEESSKYRAEQIRFDELARPVFDLSVDGETVDTVALGVP 285

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   L   ++   K L  F    G  +R+      G  T+ID+ Y  
Sbjct: 286 GEHNVYNSLAAIAVCMELGISLEMIKKGLWKFT---GTNRRFEKKGELGGITIIDD-YAH 341

Query: 349 NPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +P  + A+++               PH   R  A L +  E   LS +  + LA++ +  
Sbjct: 342 HPQEISASLATALNYPHRKLWVVFQPHTYTRTKAFLDEFAE--ALSMADEVILADIYAAR 399

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              ++ +S   ++   +A  + +  HY  + D +  FI  + + GD+++   +      +
Sbjct: 400 ETDNLGISSKDIVDRIEA--KGVKAHYIPSFDEIETFILENCIHGDLLITMGAGDI--VK 455

Query: 460 LINLLL 465
           +   LL
Sbjct: 456 VGEKLL 461


>gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
 gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 91]
 gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 7894]
 gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei BCC215]
 gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
          Length = 514

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 158/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      +VP      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVVPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
 gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1]
 gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
          Length = 465

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 163/424 (38%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGMGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD+    +      L  K +  +G + +A  +    +    +    V+ +G+  + VV
Sbjct: 216 CIDDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY   A   G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   ++    DAL R++         +  T+D +   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 9]
 gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 514

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 159/480 (33%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      +VP      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRTHVVPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A  +  G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLA--NLTGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis Bt4]
          Length = 514

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 151/459 (32%), Gaps = 46/459 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   + F A      D   FI  A+ +GA  V+   +   + G        V
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVLYQPEGFPAAGLDPATSLAV 89

Query: 89  D--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L                  + +TG+ GKT+  + +  AL+++++  A IG+  + 
Sbjct: 90  PALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGTLGSG 149

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     +AV T
Sbjct: 150 MPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDVAVFT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      +   +AKA++F          +N DD     L A     G     ++
Sbjct: 208 NLTQDHLDYHRTFDAYEAAKAKLFAW-RGLHCAVVNRDDPAGRRLLANLA--GRVRTIAY 264

Query: 251 GKSKNA-------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           G    A       +      +  +  +   V       +V    +G     N+L  LG +
Sbjct: 265 GIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVLGTL 324

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+  +       GR +R      Q    L+   Y   P +++  +  L  I
Sbjct: 325 LAADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVVDYAHTPDALEKTLEALRPI 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    G  + + G   +     +     +AE L+      V ++  +  +         +
Sbjct: 384 AQARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DKVVVTSDNPRSEEPQKIIDQI 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +    E      L         DVV++  K 
Sbjct: 440 VAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
 gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
          Length = 497

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 166/489 (33%), Gaps = 64/489 (13%)

Query: 5   WTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
               ++L+              +       V GI+ DSR +    AF  IKG   DGH +
Sbjct: 1   MKLSEILKICSENETADFRYSVVCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AIT 114
           I     K    V+V  D           V   D+   AL  ++ A        +    IT
Sbjct: 61  IDQIKDK--ASVIVVLDGEYEAKDCKAAVVSTDNTRLALALMSAAVYGNPDRKLFTIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSY---------------NNHIGVPLTLARM-PV 158
           G+ GKTTT  M+   L +       IG+                   I +  + A+M   
Sbjct: 119 GTKGKTTTTYMVKNVLEACGIKTGLIGTIETIIGDEAIPAHNTTPESIEIHQSFAKMVDA 178

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEG 216
                + E+    L   R  T  +   I V T + P H+        E+  + KA++F+ 
Sbjct: 179 GCKAVVMEVSSQGLKLDR--TAGIMFDIGVFTNLEPDHIGPNEHESFEDYLNCKAKLFKQ 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +      +N DD   + +   +    I  + S+G   NAD +    +   E   + +  
Sbjct: 237 CK---VGIVNADDKHTQDILRGA----ICKVESYGIGDNADIKAENIELLHEPGKIGLTY 289

Query: 277 QGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                 +M+V  +  G     N L  + I      D +            + +G+     
Sbjct: 290 DCTGLVNMKVELNLPGKFSVYNSLCAIAITRHFDVDEEALK---ETLKHVKVKGRIELVK 346

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           ++  F  +ID  Y  N  ++++ ++ L +  PH   R + + G     G  S+    ++ 
Sbjct: 347 VSDDFTLMID--YAHNAMALESILTTLKEYHPH---RLVCLFGC---GGNRSKERRYEMG 398

Query: 394 EVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDG 444
           EV        +  S         A+ + +   I     + +D         +       G
Sbjct: 399 EVSGKLADLTIITSDNPRFEEPEAIIEDIKTGIAKTTGKHVDITDRKEAIKYAIEHGEPG 458

Query: 445 DVVVV--KS 451
           D++V+  K 
Sbjct: 459 DIIVLAGKG 467


>gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
 gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
          Length = 514

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 158/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      +VP      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRTHVVPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 167/452 (36%), Gaps = 58/452 (12%)

Query: 32  IDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIP 84
            D R I    E F         GH        K A +VVV++ +  +   +       +P
Sbjct: 56  TD-RLIKAGAEVFI--------GHH---ENNVKDANVVVVSSAIDETNPEIIAAKAARVP 103

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V    ++L  L +             IAI G+ GKTTT  ++                  
Sbjct: 104 VVRRAEMLAELMRFR---------HGIAIAGTHGKTTTTSLIASIYGQAGLDP------T 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203
             IG  L  A     V    F +  +   +  FL   ++P ++VIT I   H+  +   +
Sbjct: 149 FIIGGLLNSAGSNAKVGKSDFLIAEADESDASFL--HLQPMVSVITNIEEDHMDTYGGSL 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++     +    L   G   +  D      L  +      + + ++G+SK+AD+++  +
Sbjct: 207 EKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRF----GRPVITYGESKDADYRMSDF 262

Query: 264 KQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            Q +      V   QG+ +    +  G H A N    + +           ++AL  F  
Sbjct: 263 SQSANTCTFTVTNKQGECLTATLNMPGRHNALNATAAIAVAKDQNIANHAILEALQKFEG 322

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R + Y    N+    ++ + Y  +P+ + A I+ + +  P  + R + V        
Sbjct: 323 IGRRFQHYGEFENERGNVMLVDDYGHHPSEVAATIAAVREGWP--DKRLVMVY--QPHRF 378

Query: 383 ELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
             ++  + D  +VL+         +Y+     + G    +L  +L  R     +  T   
Sbjct: 379 SRTRDLYEDFVKVLADVDQLLLLDVYSAGEDPIVGADSKSLCRSLRQRGKEPLHVATNAE 438

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L   + ++L + D+V+ + + + G  +L+  L
Sbjct: 439 LAGVLAANLQNNDLVLTQGAGNIG--QLVKTL 468


>gi|330973386|gb|EGH73452.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 486

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A I+ +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGHVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 AEANVLLLMEVYPAGEEPVPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +    
Sbjct: 451 ILLCQGAGDIA 461


>gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 494

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/465 (20%), Positives = 157/465 (33%), Gaps = 60/465 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKG------PHYDGHDFILHAVQKGAGLVVVNT---DMVASIGS 80
           I  DSR +   + F A+ G         DG DFI+ A   GAG VV      +   +   
Sbjct: 20  IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVCLPARVEAALADAP 79

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               V   DD   A+  L  A          ++A+TG+ GKTT   +L    S++ +   
Sbjct: 80  EGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSALGRRAG 139

Query: 139 CIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLV 182
            +G+ +                 I     L RM    VD  + E+    L +       +
Sbjct: 140 VLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQ--RRVAGI 197

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELLKAKSHA 241
           R   A++T +   HL     +E   +AKA +F  L        +N DD++   L  +   
Sbjct: 198 RFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLGE--- 254

Query: 242 LGIKTIYSFGKSKNADFQLRK------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +     FG         R+       +  +    + +  +G+  E+  H +G H A N
Sbjct: 255 --VPHAIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASN 312

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L    +   +         +L+ F    GR +R         F      Y   P +++ 
Sbjct: 313 LLAVQAVCLGMGLAPQDFA-SLAGFTGVPGRLERIVNPRGLDIFV----DYAHTPDALEN 367

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-------HIDLAEVLSLYNISHVWLSG 408
            +  L  +   G  R + V G         +         H D+A + S         + 
Sbjct: 368 VLRALRAV---GFSRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEA- 423

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +   L  +  V              + L  GDV++V  K 
Sbjct: 424 -IMADVLPGLAGARKVVSDADRARAIGKALALLQPGDVLLVAGKG 467


>gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103]
 gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103]
          Length = 499

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 176/480 (36%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P   +  +++DSR  A  + F AI G   DG  FI  A+ +G 
Sbjct: 9   NLRDLL----GPWVPDAPARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGV 64

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  AS G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 65  AAVIAEAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----VDVDFGIFE--------- 166
           TTT ++L    S + +T A +G+  N +   L  A       VDV   + E         
Sbjct: 125 TTTTQLLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLT 184

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +++  SAK  +F    + G   +
Sbjct: 185 AMEISSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE-HQVGVAII 243

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A      +                 +          + +         E
Sbjct: 244 NADDEVGRRWLANLPD-AVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGE 302

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +D  ++  +   P  G   R       G  T++
Sbjct: 303 MNSRLMGAFNVSNLLLALATLLALGYALDDLLRVAARLQPVNG---RMEVFSATGKPTVV 359

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H +G+   + G   +  +  +     +AE  +     
Sbjct: 360 VD-YAHTPDALEKALEA---ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFA----D 411

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +  +      ++D L   +    +  + G    + S++      D+V+V  K 
Sbjct: 412 IVVVTDDNPRSEDPQAIVQDILSGLLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKG 471


>gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri
           93-146]
 gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 491

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 152/421 (36%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 91  AIAADNPEIIAAREARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 142 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 193

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   L  DD     L  +      +
Sbjct: 194 AIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLPRV----GR 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S++AD ++ +++QC  Q    +  Q +  + V  +  G H A N      + S
Sbjct: 250 QVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNAPGRHNALNAAAAAAVAS 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D +  ++AL  F    G G+R+        +   N+    ++ + Y  +P  + A 
Sbjct: 310 EEGIDDEAILRALDRFQ---GTGRRFDFLGEFSLQHVNNRPGRVMLVDDYGHHPTEVDAT 366

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLA 413
           I       P  + R + V          ++  + D A VLS  ++     V+ +G H + 
Sbjct: 367 IKAARAGWP--DRRLVMVF--QPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAGEHPIP 422

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L RSI                L   +   L +GD+++ + + + G  R+  +L 
Sbjct: 423 GADSRSLCRSIRGRGKLDPVLVSDPATLAQTLAQFLQEGDLILTQGAGNIG--RVARVLA 480

Query: 466 E 466
           E
Sbjct: 481 E 481


>gi|294506461|ref|YP_003570519.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
 gi|294342789|emb|CBH23567.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
          Length = 879

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 142/404 (35%), Gaps = 43/404 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 I +    ++LG L ++            + + G+ GKTTT  M  + ++     
Sbjct: 496 EAERRRISLIPRAEMLGELIRMKFG---------VGVAGTHGKTTTTSMAGLVVAEGGFD 546

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I               +  + D  + E       E       + P +AVIT+I   H
Sbjct: 547 PTVIVGGKVTAFGS---NAITGEGDVLVIEA-----DEYDRTFLRLTPSLAVITSIEEDH 598

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L  +  +  I +A  +    +   G   L  DD   + +         + + ++G ++ A
Sbjct: 599 LDVYEDLAAIQAAFTQYANSVPFFGAAILCLDDPNVQAIVGDVE----RRVVTYGTTRQA 654

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +    ++    +  +V ++G+ +  +  H  G H  +N L  + +   L    +    
Sbjct: 655 EVRGENVRREGMTTRFDVVVRGERLGTIELHVPGMHNVRNALAAVAVGQELEISFERVRD 714

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  F    G  +R+      G  T++D+ Y  +P  ++A +    Q     + R +AV 
Sbjct: 715 GLGTFT---GVRRRFEKKGEVGGITVLDD-YAHHPTEIEATLDAAHQ--GFPDRRVVAVF 768

Query: 376 GDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIH--V 424
                M   +Q+F  + A          +  +Y      + G     L +   +  H  V
Sbjct: 769 --QPHMYSRTQNFMDEFARSFFNADMLVLTDVYGAREAPIEGVTGGRLAERAEQFGHRAV 826

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLE 466
           HY      L   +Q  +  GDVV++  +          + LL  
Sbjct: 827 HYVPEKTDLPGRLQELVGPGDVVLMLGAGDIWRASEAFVELLEN 870


>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 490

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/465 (18%), Positives = 174/465 (37%), Gaps = 47/465 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S
Sbjct: 11  DVPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDAS 70

Query: 81  LS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+KL      +  +   ++ +TG+ GKTTT ++L      + 
Sbjct: 71  MVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLG 130

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 131 ETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--- 237
            +    AV T ++  HL     +    +AK  +F   +      +N DD           
Sbjct: 191 ALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLEQLP 249

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A+ ++     G +        +       + +         ++    +G     N+L
Sbjct: 250 QAVAVSMENNIPVGWN-GPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLL 308

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L  +  L   +   + A     P  GR + +    N      +   Y   P +++ A 
Sbjct: 309 VALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF----NALGKPTVVVDYAHTPDALEKA- 363

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             L+    H +G+   V G   +  +  +     +AE L+      V ++  +  +    
Sbjct: 364 --LAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQ 417

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             + D L   +   +++ + G    + S++      DVV++  K 
Sbjct: 418 AIIADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 462


>gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
 gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
          Length = 505

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 151/405 (37%), Gaps = 40/405 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           +  ++ I++DSR +     F A+ G   DG  FI  A++ GA  ++   D +A+ G +  
Sbjct: 29  ESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIANEGDIAL 88

Query: 82  --SIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              + +  + D+   L+ +A         K  + A+TG+ GKTT  ++L    + +    
Sbjct: 89  KDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQWANLVGYKA 148

Query: 138 ACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             +G+  N                I +  TLA++     DF   E+    L + R     
Sbjct: 149 GVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGLVQGRIRD-- 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK----- 236
           +    ++ T ++  HL     ++  A AK  +F    ++G   +N DD+           
Sbjct: 207 LHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE-HQSGIAIINADDAVGASWLIDIPN 265

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A + A+  + +                +  ++   +E        +     +G   A N+
Sbjct: 266 AVAVAIDPQAVV---NHTGLKLWATDVQFSTQGVTIEFDSSWGQGKFTAPLVGSFNATNL 322

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ L  +      +   ++         GR + ++         ++   Y   P +++ A
Sbjct: 323 LLALATLLATNHPMADLLEKAPKLQAVIGRMEVFQDT----DKAMMVVDYAHTPDALEKA 378

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  L     H +G+   + G   +     +    ++AE L+   I
Sbjct: 379 LQALR---VHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQII 420


>gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 465

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 157/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +     DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIVTANGDALSRALRAAGKVEPVFVATVDEVPGALAQVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
 gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
          Length = 486

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 162/449 (36%), Gaps = 49/449 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DS +    E FF     + +G   ++      +  +  +   + +   L IPV    +
Sbjct: 59  VTDSLTRKGAEIFFGHAAENVNGASVVVV-----STAIAQDNPELVAARELRIPVVRRAE 113

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIG 148
           +L  L +             IAI G+ GKTTT  ++T     + +  T+   G     + 
Sbjct: 114 MLAELMRYR---------HGIAIAGTHGKTTTTALMTQIYFEAGLDPTFVNGG----LVK 160

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIA 207
              T AR+     + I E   S    +      ++P ++V+T I   H+  +    E + 
Sbjct: 161 SAGTNARLGCS-RYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEVLK 214

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               +    L   G   +  DD     L  +      + I ++G S +AD ++ ++KQ +
Sbjct: 215 QTFIDFLHNLPFYGLAVMCVDDPVVRELLPRI----GRQIITYGFSDDADVRIVEYKQYA 270

Query: 268 EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            Q    +   GK  + V  +  G H A N    + + +    D D  I+AL  F     R
Sbjct: 271 HQGHFTIVRAGKPDLNVKLNIPGKHNALNATAAVAVATEEGVDDDAIIRALLEFEGTGRR 330

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                         ++ + Y  +P+ +   I      +   + R + +          ++
Sbjct: 331 FDHLGEFDTGNGSVMLVDDYGHHPSEVDVTIQAAR--AGWEKKRLVMIF--QPHRYSRTR 386

Query: 387 SFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFL 435
             + D A V         L +Y+   V + G    +L   +     +   +  T D L  
Sbjct: 387 DLYEDFAHVLEQVDVLLMLDVYSAGEVAIPGADGRSLCRTIRGRGKIDPIFVPTHDDLPS 446

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + + L + D+++ + +   G  ++   L
Sbjct: 447 VLANILQNDDLLLTQGAGDVG--KIARQL 473


>gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 315

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 111/307 (36%), Gaps = 25/307 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++ SR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPH 185
           +        L   R        +                 E+    L + R     +   
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATA--LAFD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 193 VGVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 248

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 249 RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 308

Query: 305 ILTADVD 311
            L   +D
Sbjct: 309 GLDYALD 315


>gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14]
          Length = 458

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 150/416 (36%), Gaps = 47/416 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
              +  G   VV    +  +   L       IP+    ++LG L K           T I
Sbjct: 63  AENISDGIDCVVYTAAINKANPELMEAVARKIPMLTRAELLGQLMKNY--------KTPI 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A++G+ GKTTT  M++  L +           +  I V   L  +  ++  G  E  ++ 
Sbjct: 115 AVSGTHGKTTTTSMISHILLAAD--------LDPTISVGGILKAIGGNIRVGKSETFITE 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P I+VI  I   HL  F  +E+I  +  +    L   GT+ +N D   
Sbjct: 167 ACEYTNSFLHFYPKISVILNIEEDHLDFFKDLEDIRHSFHQFAALLPSDGTLIINGDIDN 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIG 289
           ++ +           + ++G S   D+         +     ++   GK ++ +     G
Sbjct: 227 YQEIYDSLDC----NVITYGSSDMLDYSASNITYDEKGLVAFDLIKNGKVVDHIQLSVTG 282

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L ++    +L   ++T  K +  F    G  +R+         T++D+ Y  +
Sbjct: 283 DHNVSNALASIATAELLQIPMETIKKGILSFS---GTDRRFEYKGTFNGVTVVDD-YAHH 338

Query: 350 PASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P  + A +                PH   R  A   +  E   LS + H+ LA++ +   
Sbjct: 339 PTEIAATLKAAQHYPHNQVWCVFQPHTYTRTKAFFHEFAE--ALSHTDHLVLADIYAARE 396

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +   G     L +   +     HY  + + +  F++ +   GD+++   +   
Sbjct: 397 TDTL---GVSSADLAEEARKLGTDAHYLPSFEEIEAFLKENCKSGDLLITMGAGDV 449


>gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 153/463 (33%), Gaps = 45/463 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G          V G +ID R +AP   F A  G   +G DFI  AV        +   + 
Sbjct: 11  GREDRGAEDAIVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFIDAAV----AAGAIAVVVR 66

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                        +    A  ++A      +  TI+A+TG+ GKT+T EM       + +
Sbjct: 67  PGAKVEGALQIADEAPRKAFAEIAAQYFTPAPDTIVAVTGTNGKTSTVEMTRQLWRMLGE 126

Query: 136 TYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLT 179
             A IG+             +                   V    +E     L + R   
Sbjct: 127 RAASIGTLGVTTPDESVSTGLTTPDIVTFHANLSGLAREGVTHIAYEASSHGLDQYRN-- 184

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYD-DSFFELLKA 237
           +  R      T  +  HL     ++    AK  +F+ +    GT  +  D   + +  + 
Sbjct: 185 YGARVVAGAFTNFSRDHLDYHESMQAYFEAKMRLFDEVIADGGTAVIWADGGEWADKART 244

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++   G++ I++ G   + D  L   +       +E+   G    +    IG + A N L
Sbjct: 245 RAEKRGLR-IFTVGPQGD-DICLIGQEPSQLGQSVEIARNGDRRTIRLPLIGQYQAANAL 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +     AD      A+    P  GR +R     +     +    Y   P +++AAI
Sbjct: 303 TAAALALASGADEARLWDAVGRLQPVRGRLERAVITQSGAPVYV---DYAHTPDALEAAI 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412
           + L    PH  GR I V G     G+        + EV S      V ++     G    
Sbjct: 360 AALR---PHVNGRLIVVFGA---GGDRDTGKRGPMGEVASRL-ADVVIVTDDNPRGEDPA 412

Query: 413 ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++ A+ +    +                 +   D+V++  K 
Sbjct: 413 DIRRAVMQGAGENTREVAGRREAIAQAIEIIGRDDIVLIAGKG 455


>gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           TXDOH]
          Length = 465

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 160/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD+    +      L  K +  +G + +A  +    +    +    V  +G+  + VV
Sbjct: 216 CIDDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEIPAAGGGAYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   ++    DAL R++         +  T+D +   +      GDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
 gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
          Length = 465

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 163/437 (37%), Gaps = 50/437 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A +   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +     DAL R++         +  ++D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAITTANGDALSRALRAVGRVDPVFVASVDDVPDALAGVARNGDVVITMGA 447

Query: 453 NSCGF--YRLINLLLEE 467
            S G    +++  + ++
Sbjct: 448 GSIGGVPAKIVQHIQQK 464


>gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10229]
 gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 14]
 gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
 gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
          Length = 514

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVAPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 158/420 (37%), Gaps = 40/420 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTT 121
           +GA  +VV+T    +I   ++ V    D+    L++  + A L +    IA+ GS GKTT
Sbjct: 70  RGADAIVVST----AIPYDNVEVIAAWDLRIPKLHRSDINAALVNAYDGIAVAGSHGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+ + L     +   I      +    T A++     + + E   S    ++     
Sbjct: 126 TTSMIGVTLDCAGVSPTII--VGGEVPDLGTNAKLGTG-RYLVSEADESDGSFLK----- 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RPHIAV+T +   H+ ++  +E+I  A     +  +  GT  L +++     +  ++  
Sbjct: 178 LRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFVDQTDADGTAVLCFENEILRQIACETPC 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
                + S+     AD++    +            +G  M  V+ +  G H   N L  +
Sbjct: 238 ----RVVSYAIDAEADYRAADMETHGSVISFTAFERGAEMGRVLLNIPGRHNVLNALACI 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +   +     +AL+ FH   G  +R++    +    ++D+ Y  +P  + A ++  
Sbjct: 294 AVARLAGVEFPEIRRALAQFH---GAKRRFQTKGKERGVWVVDD-YAHHPTEIAATLAAA 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHV 411
            Q +P   GR I V          +Q    +            +  +Y      + G   
Sbjct: 350 RQTNP---GRLICVF--QPHRYSRTQLLREEFGTCFAAADLLLLTDVYAAGEAPIPGVSG 404

Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             L   + +       Y      L  ++   +  GD+V+   + +     +   L++   
Sbjct: 405 ETLMKEVAKQTGQDAVYLPARGDLEHYLAQHVRAGDLVITMGAGNI-LE-VGEDLVKRLK 462


>gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           MSMB43]
          Length = 465

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 159/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD+    +      L  K +  +G S +A  +    +    +    V   G+  + VV
Sbjct: 216 CIDDANVRQIV----PLISKPVVRYGFSADAQVRAENVEARDGRMHFTVLRDGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY    +  G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEIPVADGGAYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   ++    DAL R++         +   +D +   +      GDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPMFVAAVDEVPDALAKLARAGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           DM98]
 gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           7894]
 gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           NCTC 13177]
 gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
 gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
          Length = 465

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 163/424 (38%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLTSAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD+    +      L  K +  +G + +A  +    +    +    V+ +G+  + VV
Sbjct: 216 CIDDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY   A   G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   ++    DAL R++         +  T+D +   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 493

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 164/415 (39%), Gaps = 53/415 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +   V +     +PV     +L  L +L            IAI G+ GKTTT  ++
Sbjct: 73  AILPDNPEVLAARESKVPVVPRAIMLAELLRLRQG---------IAIAGTHGKTTTTSLI 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T  L+         IG      G    L R     +F + E   S    +      ++P 
Sbjct: 124 TSVLAEAGMDPTFVIGGRLEAAGSHAKLGRG----EFIVVEADESDASFLH-----LQPV 174

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALG 243
           +AV+T I   H+  +     ++  A  +  + L   G   L  DD+   E++ A +    
Sbjct: 175 LAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVLCVDDAHVLEIMPAIT---- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMT 299
            K + ++G S+ A  +    +    Q        V  + + +++V +  G H  QN L  
Sbjct: 231 -KPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKIVLNLPGLHNVQNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQGFFTLIDESYNANPAS 352
           + + + +     + ++AL+ F   + R +RY             G FTLID+ Y  +P  
Sbjct: 290 IAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRNGSFTLIDD-YGHHPVE 348

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           M A I   +       GRR  VL         ++    D  +VLS  ++   + V+ +G 
Sbjct: 349 MAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSTADVLLLTEVYSAGE 404

Query: 410 HVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +   D  +L RS+ V       + E +D L   I S   D DVV+V  + S G
Sbjct: 405 APIIAADSKSLARSLRVLGKVEPIFVERVDELEEAIHSIARDKDVVLVMGAGSVG 459


>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 495

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/465 (18%), Positives = 174/465 (37%), Gaps = 47/465 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S
Sbjct: 16  DAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDAS 75

Query: 81  LS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+KL      +  +   ++ +TG+ GKTTT ++L      + 
Sbjct: 76  MVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWAKMLG 135

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--- 237
            +    AV T ++  HL     +    +AK  +F   +      +N DD           
Sbjct: 196 ALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLGQLP 254

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A+ ++     G +        +       + +         ++    +G     N+L
Sbjct: 255 QAVAVSMENNIPVGWN-GPWLSASQVHYHDNGASIAFDSSWGESQLESRLMGAFNVSNLL 313

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L  +  L   +   + A S   P  GR + +    N      +   Y   P +++ A 
Sbjct: 314 VALATLLSLGYPLTQLLAAASHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA- 368

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             L+    H +G+   V G   +  +  +     +AE L+      V ++  +  +    
Sbjct: 369 --LAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQ 422

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             + D L   +   +++ + G    + S++      DVV++  K 
Sbjct: 423 AIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 467


>gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 163/452 (36%), Gaps = 58/452 (12%)

Query: 32  IDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIP 84
            D R I    E F         GH        K A +VVV++ +  +   +       +P
Sbjct: 56  TD-RLIKAGAEVFI--------GHH---ENNVKDANVVVVSSAIDETNPEIIAAKAARVP 103

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V    ++L  L +             IAI G+ GKTTT  ++    +             
Sbjct: 104 VVRRAEMLAELMRFR---------HGIAIAGTHGKTTTTSLIASIYAQAGLDP------T 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203
             IG  L  A     V    F +  +   +  FL   ++P ++VIT I   H+  +   +
Sbjct: 149 FIIGGLLNSAGSNAKVGKSDFLIAEADESDASFL--HLQPMVSVITNIEEDHMETYGGSL 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++     +    L   G   +  D      L  +      + + ++G+S +AD+++  +
Sbjct: 207 EKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRF----GRPVITYGESSDADYRMSDF 262

Query: 264 KQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            Q +      V   QG+S+    +  G H A N    + +           ++AL  F  
Sbjct: 263 SQSANTCKFTVTNKQGESLTATLNMPGKHNALNATAAIAVAKDQNIANFAILEALQKFEG 322

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R + Y    N+    ++ + Y  +P+ + A I+   +  P  + R + V        
Sbjct: 323 IGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWP--DKRLVMVY--QPHRF 378

Query: 383 ELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
             ++  + D  +VL+          Y+     + G    +L  +L  R     +      
Sbjct: 379 TRTRDLYEDFVKVLAEVDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEPRHVANSAE 438

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L   +   L + D+V+ + + + G  +L+  L
Sbjct: 439 LASVLADCLQNNDLVLTQGAGNIG--QLVKTL 468


>gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 463

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 43/439 (9%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA------ 101
           G     H+       +GA +   +         + +    V      L            
Sbjct: 33  GSDVSRHELTEKLASRGATVYYGHRPEHVEGADIVVHSTAVKQDNVELQAARALNIPVIH 92

Query: 102 -----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
                ARL      IA+TG+ GKTTT  M+   +          +G     +G      +
Sbjct: 93  RSEMLARLMDDRVGIAVTGAHGKTTTTSMIAFTMEQNGLDPTFIVGGVVADLGDNAKAGK 152

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
            P    F + E   S    + +     RP IAV+T + P HL ++ G  E +  A     
Sbjct: 153 GP----FVVAEADESDGSFLHY-----RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFI 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G + ++ DD     L++ +       + ++G +++AD   R  +     S  +V
Sbjct: 204 RQIPSEGLLVMSADDDKLRELRSAARC----RVVTYGFAEDADITARHVELGDRASRSDV 259

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + G+ +  +     G H   N L  + +   +    + A  ALS FH   G  +R++  
Sbjct: 260 LVNGEFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFH---GAKRRFQVV 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELS 385
              G   ++D+ Y  +P  ++A I+              P    R   +  +  +     
Sbjct: 317 AEMGGVLIVDD-YAHHPTEIRATIAAAKSTGRRIVAVFQPQRYTRTFFLFEEFAK--AFG 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           ++  + L ++ S      +       LA + A   + H  Y  T D +  ++  ++  GD
Sbjct: 374 EADEVILCDIYSPAGERKIDGVSAARLASEIARMSNPHTRYIPTHDDVIEYLAQNVRPGD 433

Query: 446 VVVVKSSNSCGFYRLINLL 464
           +V+   +     +++   L
Sbjct: 434 LVLTMGAGDV--WKVAKGL 450


>gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu]
          Length = 465

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 159/426 (37%), Gaps = 52/426 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IAI G+ GKTTT  ++   L++  +  T+         IG  L  A     +  G 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGDLDPTFV--------IGGRLISAGANARLGTGD 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
           F +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+ 
Sbjct: 156 FIVAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSA 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
            +  DD     +         K +  +G S +A  +         +    V  +G+  + 
Sbjct: 214 VVCVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGREPLP 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
           VV +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    
Sbjct: 270 VVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPAAGGGSYT 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A I   +       GRR  VL         ++    D   VLS  + 
Sbjct: 330 LIDDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDA 385

Query: 402 ---SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
              + V+ +G   +     DAL R++         +   +D +   +     +GDVV+  
Sbjct: 386 LVLTEVYAAGEAAITTANGDALSRALRAAGKVEPVFVAAIDDVPDALTKVAQNGDVVITM 445

Query: 451 SSNSCG 456
            + S G
Sbjct: 446 GAGSIG 451


>gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 154/422 (36%), Gaps = 49/422 (11%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV    +            L IP+     +LG + K             +A+ GS 
Sbjct: 67  GADLVVYTAAIHDDNVEYQKAKELGIPIIDRATLLGLIMKKYKFG--------VAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L            Y+  + V   +  +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVILDRAG--------YDPTVLVGGEIDAIGGNVRVGKSEYFVTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPSDGFVVACKDDANTMHVIK 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQN 295
                  K I ++G ++ +D+Q +      +  +   V  +GK +        G H   N
Sbjct: 231 GLE----KNIVTYGINEKSDWQAKDITYDEKGCASFNVYYRGKFIGHFKLSIPGKHNIYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L +L +  +L  D + A + +  F   +G  +R+         T++D+ Y  +PA + A
Sbjct: 287 ALASLAVTYLLGVDTEKAKEYIKEF---KGTHRRFEVKGVVEGVTVVDD-YAHHPAEIHA 342

Query: 356 AISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +                PH   R  A+L D  E  + +         +  +Y       
Sbjct: 343 TLEAAKNYPHKRIIAIFQPHTYSRTKALLSDFAESFDAADK-----IIITDIYAAREKDT 397

Query: 407 SGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  L D    R   V Y +  D +  +++ +  +GD+V+   + +   Y +    L
Sbjct: 398 GIVSSKDLVDLIFKRGKDVLYIKDFDSIVEYLKENTEEGDLVLTIGAGNI--YEVGEKFL 455

Query: 466 EE 467
           EE
Sbjct: 456 EE 457


>gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
 gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
          Length = 514

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 158/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      +VP      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVVPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAIVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|87122626|ref|ZP_01078503.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
 gi|86162084|gb|EAQ63372.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
          Length = 478

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 136/405 (33%), Gaps = 39/405 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            + +    +       IP+    ++L  L +             IA+ G+ GKTTT  ++
Sbjct: 84  AINIENPEIKWGKENRIPIVRRAEMLAELMRYR---------HGIAVAGTHGKTTTTSLM 134

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++     A        +    T A++     + + E   S    +      ++PH 
Sbjct: 135 ASVLAATGD--APTFVIGGRLTSAGTNAQLGSS-KYLVAEADESDASFLH-----LQPHS 186

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+  +    E++     E    L   G   L  DD     +  +      +
Sbjct: 187 AIVTNIDEDHMDTYGGDFEKVKHTFVEFLHNLPFYGMAVLCVDDENVREILPQVS----R 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G    ADF      Q              + + +     G H   N L T+ + +
Sbjct: 243 PILTYGIEHEADFYATDLVQTGRYCEFVAHRPNLEPIRIRLPMPGKHNVLNALATIAVAT 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            L  +       L  F     R +     AL +    +  + Y  +P  ++  I  +   
Sbjct: 303 DLGVEAVAIQAGLMGFEGVGRRFQEQSPLALPKSGEVMFIDDYGHHPREVEVTIDAIRDG 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLAL 414
            P  + R + +          ++  + D  +VLS          Y      ++G    AL
Sbjct: 363 WP--DKRLVMIY--QPHRFSRTRDLYEDFVKVLSKVDVLLLLDVYAAGEAPVNGADSRAL 418

Query: 415 KDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             ++ +   V   +    + L   + + L DGD+++ + +   G 
Sbjct: 419 CASIRQRGAVDPIHVGKDEDLSSILANVLRDGDLMITQGAGDIGL 463


>gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
 gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
          Length = 514

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVAPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAIVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 477

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 137/378 (36%), Gaps = 36/378 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVP 150
           L  L++  + A L +  T IAI G+ GKTTT  M    L          IG   + +G  
Sbjct: 89  LQILSRAQMLAMLMAGKTQIAIAGAHGKTTTTSMTASVLRQGGLAPSVVIGGIVDSLGGN 148

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L         G + +  +   +  FL     PH+AV+T +   HL ++  +  I    
Sbjct: 149 AVL-------GPGDYFVAEADESDGSFLV--FNPHVAVVTNVDREHLDHYRDLAHIQEVF 199

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A+    ++  G +   YDD     L           + ++G     +++    +     S
Sbjct: 200 AKFIHQVQPGGAVVACYDDPNLRPLLYGVQG----RLITYGLKSGGNYRAAHIQVTGGGS 255

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +  Q K + ++     G+H   N L    +   L  D       L+     +   +R
Sbjct: 256 SYTLLRQEKKLGQITIPLAGWHYVANSLAAAAVGFALGLDFRDIQAGLAQTGRIK---RR 312

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
           +         T+ID+ Y  +P  ++A +  ++Q            PH   R  A+L D  
Sbjct: 313 FEIKGENQGVTVIDD-YGHHPTEIRATLDAMAQAFAGRRLVVAFQPHRFSRTQALLPDFF 371

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFI 437
           ++ + +      L  +  +Y+     + G     L   +  + H  V Y    + L   +
Sbjct: 372 DIFQQA-----QLLFLTDIYSAGERVIHGLSGRDLYRGIREAGHTAVQYVGNREELAPEL 426

Query: 438 QSSLVDGDVVVVKSSNSC 455
            + L  GDV+V   +   
Sbjct: 427 WNYLRRGDVLVTMGAGDI 444


>gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
          Length = 473

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 144/425 (33%), Gaps = 49/425 (11%)

Query: 53  GHDFILHAVQKGAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   G   VVV           V       +PV    ++L  L +L       
Sbjct: 59  GH----KAENLGDAAVVVTSTAIKKGNPEVDLALERRVPVIRRAEMLAELMRLKS----- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  M+   L +       I   N  I           + ++ + 
Sbjct: 110 ----TVAVAGTHGKTTTTSMVAALLDAGGVDPTVI---NGGIINSYGSNARLGNSEWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   +AV+T I P HL ++   +++  A  E  E +   G   L
Sbjct: 163 EADESDGSFLR-----LDGTLAVVTNIDPEHLDHYGSFDKVKDAFVEFVENVPFYGAAML 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             D    + +  +      + I ++G S  AD +    +     +  +VQ++ +   +  
Sbjct: 218 CLDHPEVQAILPRVQ---DRRIVTYGFSAQADIRGENVQPIPGGNRFDVQIRERDGSLRR 274

Query: 285 -----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N +  +G+   +  D  T     + F   + R  +       G  
Sbjct: 275 IEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFTKVGEIAVGGGS 334

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHI-----DL 392
             + + Y  +P  +KA   VL+      +GR IAV+       + +L   F       D+
Sbjct: 335 ATVIDDYGHHPVEIKA---VLAAAREGAKGRVIAVVQPHRFTRLRDLMDEFQQAFNDADI 391

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVK 450
                +Y      + G     L   L R  H      E  D L   I + +   D+++  
Sbjct: 392 VYAAPVYPAGEQPIEGVDSAELVAGLKRRGHRNAATVEGADDLARLIAADVQADDMIICL 451

Query: 451 SSNSC 455
            +   
Sbjct: 452 GAGDI 456


>gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
 gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
          Length = 921

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 170/479 (35%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL A+   +    P   +  +++DSR  A  + F AIKG   DG  +I  A+ +G 
Sbjct: 431 NLSDLLGALGIQA----PSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQGV 486

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+     VA+ G +     IP+  +D++   L+KL      +   K  +I +TG+ GK
Sbjct: 487 SAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIGVTGTNGK 546

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------- 165
           TTT ++L      + +  A +G+  N +   +  A         I               
Sbjct: 547 TTTTQLLAQWAQGLGEISAVMGTVGNGLLDHVVPAMNTTGSAVDIQLELQQLLNQGATLT 606

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    +V T ++  HL     +     AK  +F     +G   +
Sbjct: 607 AMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFS-THHSGEKII 665

Query: 226 NYDDSFFELLKAK-SHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEV 283
           N DD+  +   ++   A+ +    +  ++    F +  +       + +          +
Sbjct: 666 NADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSSWGEGII 725

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  L  +  L   ++  I A S   P  G   R          T+I 
Sbjct: 726 ESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCG---RMEVFSANNRPTVIV 782

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P +++ A+        H  G+   V G   +  +  +     +AE L+      
Sbjct: 783 D-YAHTPDALEKALQA---ARLHCTGKLWCVFGCGGDRDKGKRPLMGAVAEELA----DK 834

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +  +         +   L         E        +       D+++V  K 
Sbjct: 835 VVITDDNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKG 893


>gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis MSMB43]
          Length = 514

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 152/459 (33%), Gaps = 46/459 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   + F A      D   FI  A+ +GA  V+   +   + G        V
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQPEGFPAGGLDPATSLAV 89

Query: 89  D--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L                  + +TG+ GKT+  + +  AL+++++  A IG+  + 
Sbjct: 90  PALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGTLGSG 149

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     +AV T
Sbjct: 150 LPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGR--VNGTAFDVAVFT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      +   +AKA++F          +N DD     L A     G     ++
Sbjct: 208 NLTQDHLDYHRTFDAYEAAKAKLFAW-RGLRCAIVNRDDPVGRRLLANLA--GRVRTIAY 264

Query: 251 GKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           G        +AD        +  +  +   +       +V    +G     N+L  LG +
Sbjct: 265 GIDARRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGTFNVSNLLAVLGTL 324

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+  +       GR +R      Q    L+   Y   P +++  +  L  I
Sbjct: 325 LAADVPFDAALAEIEKLESVNGRMQRL-GGRLQNDEPLVVVDYAHTPDALEKTLDALRPI 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    G  + + G   +     +     +AE L+      V ++  +  +         +
Sbjct: 384 AQARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DKVVVTSDNPRSEDPQKIIDQI 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +    E      L         DVV++  K 
Sbjct: 440 VAGMQDAANARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           J2315]
 gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           J2315]
          Length = 465

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 163/437 (37%), Gaps = 50/437 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D    AL+ F+    R +RY       G    + 
Sbjct: 272 LNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +     DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAAGKVDPVFVATVDDVPDALAKVARNGDVVITMGA 447

Query: 453 NSCGF--YRLINLLLEE 467
            S G    +L+  + ++
Sbjct: 448 GSIGGVPAKLVQHIQQK 464


>gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
 gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
          Length = 499

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 158/459 (34%), Gaps = 51/459 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             NG  +DSR +A  + F A+    +       +F   A+  GA  V+  + +      +
Sbjct: 21  PFNGFCLDSRKVASGQIFIALNSYSQPEKT--IEFAQKALDSGALAVISESALGLKNEWV 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                 V  ++G   K  + A    +A   +A+TG+ GKTT   ++   +SS     A +
Sbjct: 79  CP---QVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLVAELISSQGLGCAVM 135

Query: 141 GSYNNHIGVPLT---------LARMPVDVDFG-------IFELGMSHLGEIRFLTHLVRP 184
           G+  N I   LT         L       D+          E     L + R   +    
Sbjct: 136 GTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLEQGRL--NGCDI 193

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALG 243
            IAV + ++  HL     ++  A AKA +F+       + +N DD +  ++ KA  +   
Sbjct: 194 EIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLK-AVVINLDDQYASIMLKAAKNNPS 252

Query: 244 IKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I ++  ++ +AD+ +   +     +   +     S  V    +G    +N+L +L  
Sbjct: 253 QPKILTYSLTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFNVENLLASLIA 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D+   +K +       GR +  +         L    Y   P ++   I VL+ 
Sbjct: 313 AEYAGFDLADLVKFVPELKGAPGRMQVIQ-----DHERLFVVDYAHTPDAL---IQVLTT 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  H  G+  AV G   +     +      A  L   N   +          +       
Sbjct: 365 LKRHVTGQLWAVFGCGGDRDRGKRPLMTQAA--LDYANPVVLTSDNPRTENPEQIFADMK 422

Query: 423 HVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451
           H    +               F+      GD+VV+  K 
Sbjct: 423 HGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKG 461


>gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
 gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
          Length = 459

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 151/448 (33%), Gaps = 66/448 (14%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
            I     F A++G   DG  +      +G G V+ +     +            D     
Sbjct: 21  EIGRDGLFVALRGDRADGRQWADAVRSRG-GYVLSDQPGERT--------IVHPDPRAVY 71

Query: 96  NKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------ 147
             L  A       K T+I +TG+ GK+T  ++L   LS   +    IG+    I      
Sbjct: 72  PLLLQAYYDYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCCLIGTGRIVIGDEVRF 131

Query: 148 -----GVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                  PLTL R+  +      D  I E+    L   R     +   +AV+T +   HL
Sbjct: 132 SPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHR--VDGLLFDLAVLTNLKQDHL 189

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                ++    AK  +FE L++ GT  LN DD   +   ++ H    + ++++G+  + +
Sbjct: 190 DYHKTLKAYQRAKFMLFEKLKEKGTAILNQDDPVTQRWLSQLH----RPVFTYGRD-SVN 244

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F++    +  +    +  L G  +E      G    +N+   L     L       ++  
Sbjct: 245 FRIHPVAETLDSITFD--LNGHRVEA--PLAGAFNMRNLTAALACGFALDIPWAAMLEFA 300

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                 EG   R      Q    ++D  Y    ++++A +    +++     R   V G 
Sbjct: 301 HHAALPEG---RMEIVCRQPVLAVVD--YAHTASALEAMLKHWRKVADQRHTRLSVVFGC 355

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------------VLALKDALPRSIHVH 425
               G+        +  +   Y    V L   +            + A  D   + I   
Sbjct: 356 ---GGDREADKRPLMGRIACAY-ADQVVLCDDNPRTEDPDRILAQIAAGCDGSQKIIR-- 409

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     F+       D++VV  K 
Sbjct: 410 ---DRAEAIKFVLDGAQTDDIIVVAGKG 434


>gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 154/461 (33%), Gaps = 57/461 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG------SLSI 83
           +  DSR +   + F A+ G + DG  FI  AV+ GA +VV                +   
Sbjct: 19  VRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEGC 78

Query: 84  PVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V   +D   AL +LA A      S+  I+ +TG+ GKTT+  +L    +        +G
Sbjct: 79  RVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVLG 138

Query: 142 SYNNHIG---------------VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +                   V   LA+M    VD  + E+    + + R     V   
Sbjct: 139 TVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQR--VCGVPFA 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T +   HL     +E     KA +F  L      + +N DD +   L         
Sbjct: 197 GAAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELC----- 251

Query: 245 KTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               SFG  +                +E   + + L+G++ E+    +G   A N+L   
Sbjct: 252 PRALSFGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLTVQ 311

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +      D        ++       G+  R   +QG    +D  Y   P ++   ++VL
Sbjct: 312 ALALETGLDPGQ---FKALESFTGVCGRLERVENSQGLNVFVD--YAHTPDAL---VNVL 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416
             +   G  R I V G     G   ++    + E ++ Y    V  S         A+  
Sbjct: 364 KALRGAGFKRIITVFGC---GGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILR 420

Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                L  +  V                L   D +++  K 
Sbjct: 421 DVLPGLKEAREVLVEVDRHAATARALDMLGKDDALLIAGKG 461


>gi|237756370|ref|ZP_04584917.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691467|gb|EEP60528.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 456

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 146/401 (36%), Gaps = 45/401 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L IP     ++L  L +             IAI GS GKTTT  M
Sbjct: 73  SAVKPDNPEMIKAKQLGIPTIPRGEMLAELMRFKYG---------IAIAGSHGKTTTTSM 123

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L          IG      G    L R       G F +  S   +  FL   + P
Sbjct: 124 VGTVLGKTGFDPTVVIGGKLEAYGSNAKLGR-------GEFLVTESDESDGSFL--KLTP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I  I  I   H+  +  +E+I  A       +   G   +N DD   + +         
Sbjct: 175 TIVSINNIDLEHIGFYKDLEDIKKAFVTFANKVPFYGAAAVNIDDENVKSILPYIE---- 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG S++AD +    +  + +   +V   G   E+     G H   N L T+ I +
Sbjct: 231 RKVIKFGFSEDADIRAYDLRLENGRYKFKVNDFG---EIHLSVPGIHNVYNALATIAICN 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        ++L  F   +   +R+    +     +I + Y  +P  +KA    LS   
Sbjct: 288 ELNVPFCVIKESLENFKNAK---RRFEIKYSND--IVIIDDYAHHPTELKA---TLSAAR 339

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA--LKDALP 419
            + + RRI  +        L+  F  + A+   + +I   + V+ +G + +     + L 
Sbjct: 340 DYFKDRRIIAVFQPHRYSRLNVLF-EEFAKAFDIPDITIVTEVYSAGENPIENVSGEKLA 398

Query: 420 RSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + I      V+Y   ++     +++ +  GDV++   + S 
Sbjct: 399 KKIKEYRKNVYYVSNLEEAENLLKNIIQIGDVILTLGAGSI 439


>gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
 gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
          Length = 514

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVAPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
 gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
          Length = 466

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/402 (21%), Positives = 154/402 (38%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +    +    IP+    D+LG + +    A        I + G+ GKTTT  M
Sbjct: 77  AAISEDNEEFQEVKRRGIPMMTRADLLGRIMQNYATA--------INVAGTHGKTTTTSM 128

Query: 126 LTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L  + K     +G     IG  L           G  ++ ++   E     H   P
Sbjct: 129 IGEILMEAAKDPTITVGGMMKDIGGNL---------RVGQSDIFLAEACEYTNSFHSFFP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI  +   HL  F  I EI  +     E L + G + +N D   +E        LG 
Sbjct: 180 SIAVILNVEADHLDFFKDINEIRDSFKTFIERLPEDGLVVINKDIPHYEYFLED---LGG 236

Query: 245 KTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           + I +FG   +AD+      +   +  S+   +      +V     G H   N L  + +
Sbjct: 237 RKIITFG-HGDADYTANFISYDHYARPSFTLFEHGEDRGKVTLSVTGEHNIYNSLSAIAV 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   +A    H   G  +R++       FT+ID+ Y  +P  + A I+   +
Sbjct: 296 ARYLGISFEDIKEA---LHRFSGTDRRFQRKGKINGFTIIDD-YAHHPQEIAATIAAAQK 351

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R  A++ D    G L+Q+  I LA++ +    + V +S   +  
Sbjct: 352 YPHRKLWIVFQPHTYSRTKALMEDFA--GALAQADEIILADIYAAREKNTVGISSDDLRK 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L   L ++ +V+Y      +  +I   + +GD+++   + + 
Sbjct: 410 L--MLSQNTNVYYIPDFPSIEKYILEHVKEGDLLITMGAGNI 449


>gi|330981215|gb|EGH79318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 460

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    FI H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 32  ESFGAQIFIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 90

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 91  --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 138

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 139 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNL 192

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S++AD +    +Q    ++  V  +
Sbjct: 193 PFYGLAVMCIDDPVVREIL----PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR 248

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y      
Sbjct: 249 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVD 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A IS +    P  + R + V          ++  + D  +VL
Sbjct: 309 GGNVMLVDDYGHHPREVAAVISAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 364

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 365 ADANVLLLMEVYPAGEEPVPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 424

Query: 446 VVVVKSSNSCG 456
           +++ + +    
Sbjct: 425 ILLCQGAGDIA 435


>gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes
           130Z]
 gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes
           130Z]
          Length = 476

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 154/440 (35%), Gaps = 45/440 (10%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-----SLSIPVFGVDDVLGALNKLAV 100
           + G  + GH      V+  + +VV +     ++         IPV     +L  L +   
Sbjct: 62  LGGKIFIGH--AATNVENASVVVVSSAIKPDNVEVVAAHEKRIPVIQRAQMLAELMRFR- 118

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     IAI G+ GKTTT  M+++  +            N  +             
Sbjct: 119 --------HGIAIAGTHGKTTTTAMISMIYTQAGLD---PTFVNGGLVKSAGTNAYLGAS 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEK 219
            + I E   S    +      ++P ++V+T I P H+       +E+          L  
Sbjct: 168 RYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPF 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-G 278
            G   +  DD+    L  +      + + ++G S+ AD+++  ++Q   Q   +V    G
Sbjct: 223 YGLAVMCADDAVLMELVPQV----GRQVITYGFSEKADYRIENYEQTGFQGHYDVITPAG 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + + ++ +  G H A N    L +        D  + AL+ F     R  +    +    
Sbjct: 279 ERIHILLNVPGKHNALNATAALVVAKEEGIGNDAILAALADFQGAGRRFDQLGEFIRPNG 338

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HI 390
             ++ + Y  +P  +   I          E RR+ ++            F         +
Sbjct: 339 KVMLVDDYGHHPTEVGVTIQAARS---GWENRRVVMVFQPHRYSRTRDLFDDFVRVLSQV 395

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
           D+  +L +Y      ++G    +L  ++     V   +      L   +   + DGD+++
Sbjct: 396 DVLILLDVYPAGEQPIAGADSRSLARSIRNLGKVDPIFVADHGQLPEVVDQIIQDGDLIL 455

Query: 449 VKSSNSCGFYRLINLLLEEF 468
            + + +    RL   L+E +
Sbjct: 456 AQGAGNV--SRLSRNLVEHW 473


>gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
 gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
          Length = 482

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 157/460 (34%), Gaps = 60/460 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR   P   F A+ G   DG  FI  AV +GAG VV   +   + G     V    
Sbjct: 18  LCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPESAGNCGEAE--VVDCA 75

Query: 90  DVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LA A    +     ++ +TG+ GKTTT  +L    +S  K    +G+ +   
Sbjct: 76  DPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLLDHLFASAGKKTGVLGTVSYRW 135

Query: 148 GVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 A M                   VD    E+    L + R     V    AV + 
Sbjct: 136 PGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSHALDQNR--VAGVGFGGAVFSN 193

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF------LNYDDSFFELLKAKSHALGIK 245
           +   HL     +E    AKA++F  L+  G  F      +  D+ +   L   +      
Sbjct: 194 LTQDHLDYHHDMETYFKAKAKLF--LDGDGKPFADRVMAIGTDNPWGARLAGMAPEA--- 248

Query: 246 TIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               FG + +       + +     +    +  + +G+  E     +G + A+N+L    
Sbjct: 249 --IGFGLTASGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVGNYNAENLLAVQA 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D + A +    F    GR +R     N   F      Y   P ++   I+VL+
Sbjct: 307 VALGFGLDPE-AFRCFETFCGVPGRLERILNPQNLDVFV----DYAHTPDAL---INVLN 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD- 416
            +   G  R + V G     G   ++    + E ++  +   V  S         A+   
Sbjct: 359 ALRGAGFKRIVTVFGC---GGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAIMAD 415

Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               L  +  V                L  GD +++  K 
Sbjct: 416 VMPGLSGAAEVFADPDRRRAIEKGLELLHPGDALLIAGKG 455


>gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
 gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
          Length = 483

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 165/452 (36%), Gaps = 58/452 (12%)

Query: 32  IDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIP 84
            D R I    E F         GH        K A +VVV++ +  +   +       IP
Sbjct: 56  TD-RLIKAGAEVFI--------GHH---ENNVKDANVVVVSSAIDETNPEIIAAKAARIP 103

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V    ++L  L +             IAI G+ GKTTT  ++    +             
Sbjct: 104 VVRRAEMLAELMRFR---------HGIAIAGTHGKTTTTSLIASIYAQAGLDP------T 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203
             IG  L  A     V    F +  +   +  FL   ++P ++VIT I   H+  +   +
Sbjct: 149 FIIGGLLNSAGSNAKVGKSDFLIAEADESDASFL--HLQPMVSVITNIEEDHMDTYGGSL 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E++     +    L   G   +  D      L  +      + I ++G+S  AD+++  +
Sbjct: 207 EKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRF----GRPIITYGESPTADYRMSDF 262

Query: 264 KQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            Q +      V   QG+ +    +  G H A N    + +           ++AL  F  
Sbjct: 263 SQSANTCTFTVTNKQGECLTATLNMPGKHNALNATAAIAVAKDQNIANQAILEALQKFEG 322

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R ++Y    N+    ++ + Y  +P+ + A I+ + +  P  + R + +        
Sbjct: 323 IGRRFQQYGEFENERGNIMLVDDYGHHPSEVAATIAAVREGWP--DKRLVMIY--QPHRY 378

Query: 383 ELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
             ++  + D  +VL+         +Y      + G    +L  +L  R     +  +   
Sbjct: 379 SRTRDLYEDFVKVLADVDQLLLLDVYGAGEEPIVGADSKSLCRSLRQRGKEPLHVASSKE 438

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           L   +  +L + D+V+ + + + G  +L+  L
Sbjct: 439 LAGVLADNLQNNDLVLTQGAGNIG--QLVKTL 468


>gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
 gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
          Length = 489

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 163/447 (36%), Gaps = 40/447 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSI 83
           + G++ DSR+I P   F A+KG H DG DF   AV  GA  V+   D    +    S  +
Sbjct: 21  ITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERDAADRLAQELSKDV 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            ++  D+       +A          ++A+TG+ GKT+    +     +     A +G+ 
Sbjct: 81  VLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQAAGHASASLGTI 140

Query: 144 N---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                           + + +   LAR+  + +     E     L + R     VR   A
Sbjct: 141 GTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHRL--DGVRLVAA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKT 246
             T +   H+     +E+   AK  +F  L   G  + +   + + + + A +   G+  
Sbjct: 199 GFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIAVAQERGL-P 257

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++S G++     +L K    +    + V+  G++  V+   IG     N L+  G+    
Sbjct: 258 VFSVGEAGEN-IRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVAAGLCICA 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D AI AL+      GR + +      G    ID  Y   P +++ A++ L    P 
Sbjct: 317 GVAPDEAIAALAELKGAPGRLE-FAGRSQTGGTVYID--YAHKPDALENALAALR---PF 370

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA-LPR 420
             G+   V+G     G        ++   +S      V ++           ++ A L  
Sbjct: 371 ASGQLSVVIG----AGGDRDPGKREIMGRVSQVGADLVIVTDDNPRTEDPATIRKAVLSG 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +                   L  GD++
Sbjct: 427 APGALEIGDRREAIREGVRRLKSGDIL 453


>gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
 gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
          Length = 473

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 144/425 (33%), Gaps = 49/425 (11%)

Query: 53  GHDFILHAVQKGAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   G   VVV           V       +PV    ++L  L +L       
Sbjct: 59  GH----KAENLGDAAVVVTSTAIKKGNPEVDLALERRVPVIRRAEMLAELMRLKS----- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  M+   L +       I   N  I           + ++ + 
Sbjct: 110 ----TVAVAGTHGKTTTTSMVAALLDAGGVDPTVI---NGGIINSYGSNARLGNSEWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   +AV+T I P HL ++   +++  A  E  E +   G   L
Sbjct: 163 EADESDGSFLR-----LDGTLAVVTNIDPEHLDHYGSFDKVKDAFVEFVENVPFYGAAML 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             D    + +  +      + I ++G S  AD +    +     +  +VQ++ +   +  
Sbjct: 218 CLDHPEVQAILPRVQ---DRRIVTYGFSAQADIRGENVQPIPGGNRFDVQIRERDGSLRR 274

Query: 285 -----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N +  +G+   +  D  T     + F   + R  +       G  
Sbjct: 275 IEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFTKVGEIAVGGGT 334

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHI-----DL 392
             + + Y  +P  +KA   VL+      +GR IAV+       + +L   F       D+
Sbjct: 335 ATVIDDYGHHPVEIKA---VLAAAREGAKGRVIAVVQPHRFTRLRDLMDEFQQAFNDADI 391

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVK 450
                +Y      + G     L   L R  H      E  D L   I + +   D+++  
Sbjct: 392 VYAAPVYPAGEQPIEGVDSAELVAGLKRRGHRNAATVEGADDLARVIAADVQADDMIICL 451

Query: 451 SSNSC 455
            +   
Sbjct: 452 GAGDI 456


>gi|77919795|ref|YP_357610.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
 gi|109892717|sp|Q3A2G7|MURC_PELCD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77545878|gb|ABA89440.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
          Length = 458

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 151/413 (36%), Gaps = 46/413 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V       IPV    ++L  L ++            IA+ G+ GKTTT  M+
Sbjct: 73  AVKSDNPEVIEAHRRLIPVIPRAEMLAELMRMKYG---------IAVAGTHGKTTTTSMV 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  LS         IG   + IG    L +       G F +  +   +  FL   + P 
Sbjct: 124 STVLSKSGIDPTVVIGGRLDSIGSNAKLGQ-------GKFLVAEADESDGSFL--KLSPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T +   HL  +S ++EI     +    +   G   L  DD   + L  +      K
Sbjct: 175 IAVVTNVDADHLDYYSDLDEIKRTFVDFINKIPFYGVAILCLDDPNVQALIPQV----GK 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD+  ++     E++   V  QG+ + ++     G H   N L  + +  
Sbjct: 231 RFVTYGMSTQADYNAQEISYQEERTTFTVCWQGERLGQLSIRMPGQHNVLNALAAVAVAR 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   +A   F   + R +       QG   ++ + Y  +PA +K  ++      
Sbjct: 291 ELEIPFEQIAEAFCDFCGVQRRFQP----KYQGRDIMVVDDYGHHPAEIKVTLAAACS-- 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALK 415
                R +AV          +Q+   +            V+ +Y      + G     L 
Sbjct: 345 -GWNRRVVAVF--QPHRYSRTQALFDEFVTAFYQADHLVVMDIYAAGETPIPGVEARLLA 401

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +    H  VHY    + +   ++  +  GD+V+   + +   +++   L E
Sbjct: 402 EGIAGHGHRDVHYCPDAEAVAAHLREVVQAGDLVLTLGAGNV--WQIGEALAE 452


>gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 486

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 159/482 (32%), Gaps = 60/482 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L++ I            +  I+ DSR   P   F  + G   DGH F   A  +G
Sbjct: 1   MKLNELVRHIDHT---GASDAEITAITYDSRKAGPGALFVCLVGAWMDGHTFARSAYDQG 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
               +V   +        +      D   AL  +          +  II ITG+ GKTTT
Sbjct: 58  CRAFLVEHTLDLPAD---VAQIVTQDTRAALAVIGADFYGNPAEQLHIIGITGTKGKTTT 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR-----MPVDVDFGIFE 166
             + +  L+    + A IGS   +I              L L R     +  +V   + E
Sbjct: 115 ALLTSAILTEAGLSCAYIGSNGVNIAGTHEATANTTPESLELHRLFRKMLDANVHHVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   R     +   +   T ++  H+        E+  +AK  +F        + 
Sbjct: 175 VSSQALRHHR--VDGIPFEVVAFTNLSEDHIGPGEHPDFEDYKAAKRRLFAEYNAR-VMV 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ----CSEQSWMEVQLQGKS 280
            N DD+  + ++A      +    SFG   +AD++     Q     +       +  G++
Sbjct: 232 YNADDAVSDYMRAGFAGQQV----SFGIGHDADYRAVDLAQYRSETALGIDFTCEHGGEA 287

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G   A + L  + +        D A K L+   P EGR +       + F  
Sbjct: 288 TPVRVMSPGAFSASDALCAIALCGAFGVTPDQAAKTLAH-TPVEGRFEVVEGLPGRTFIV 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y+ N  ++ +A+  L    P    R I V G    +G  +Q    +LAE  S + 
Sbjct: 347 ----DYSHNGLALTSALKTLRAYQP---RRLICVFGS---VGGRTQVRRRELAEAASAW- 395

Query: 401 ISHVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             +  L+  +            +   +                    +    GD+V+   
Sbjct: 396 ADYSILTSDNPDFEDPMNILRDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAG 455

Query: 450 KS 451
           K 
Sbjct: 456 KG 457


>gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
 gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
          Length = 468

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV    ++L  L +             IA+ G+ GKTTT  + 
Sbjct: 72  AVGEDNPEVVAAREARIPVVPRAEMLAELMRFRQG---------IAVAGTHGKTTTTSLT 122

Query: 127 TIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L+      T+   G  N+      T AR+    D+ + E   S    +     +++P
Sbjct: 123 ASLLAEGGLDPTFVIGGKLNS----AGTNARLGSG-DYLVAEADESDASFL-----ILQP 172

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T I P HL+ +    E++     E    L   G   +  DD     +  +     
Sbjct: 173 VMSVVTNIEPDHLATYGGSFEKLKDTFVEFLHHLPFYGLAVMCVDDPVVREILPRVTC-- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSME-VVHHGIGYHMAQNMLMTLG 301
                ++G  + AD Q    +     S  +V L  GK ++ +  +  G H  QN L  L 
Sbjct: 231 --QTLTYGIQEGADIQAINLRFEGATSVFDVALPNGKRLDGITLNMPGEHNVQNALAALA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I   L    D+   AL  F     R +             + + Y  +P+ M A +    
Sbjct: 289 IAHELGVSGDSISSALQSFGGIGRRFQLLGDIQCGNGSVTLVDDYGHHPSEMSATLRAAR 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDAL 418
              P     R  V+         +Q    D A VLS  +    + V+ +G   +   D  
Sbjct: 349 NAWPD----RRLVVAFQPHRYSRTQDLFEDFASVLSAADALCLTEVYAAGEPAVPGADGR 404

Query: 419 PRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +  V         + E+++ L   +Q  L +GDV++   + S G
Sbjct: 405 SLAAAVRARGQVNPVFVESVEALPEVLQGVLEEGDVLLTLGAGSIG 450


>gi|90407785|ref|ZP_01215963.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
 gi|90311145|gb|EAS39252.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
          Length = 487

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/423 (20%), Positives = 157/423 (37%), Gaps = 48/423 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV+T + A+   L       IPV    ++L  L +          
Sbjct: 68  FIGHEQKNIYGASVVVVSTAIDANNPELLAAEQARIPVVRRAEMLAELMRYR-------- 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IAI+G+ GKTTT  ++       K      IG   N  G    L +      + I E
Sbjct: 120 -HGIAISGTHGKTTTTSLIASIFGQAKLDPTFVIGGLLNSAGTNAKLGQ----SRYLIAE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFL 225
              S    +      ++P I+V+T I   HL       E +        + L   GT  +
Sbjct: 175 ADESDASFLH-----LQPMISVVTNIEADHLDTYQGDFEILKDTFVRFIQNLPFYGTAVV 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DDS  E L  +      +   ++G  + AD ++  + Q       ++    K  ++V 
Sbjct: 230 CLDDSVVESLIPRFA----RQCVTYGFHEQADIRISNFSQLRSHCEFDLHRVNKDVLKVQ 285

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H A N    + +      D +  I+AL  F     R ++Y          L+ +
Sbjct: 286 LNLPGKHNALNAAAAIAVAMEENIDDEFIIEALHNFEGIGRRFEQYGEFATGRGNVLLVD 345

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------ 398
            Y  +P  ++A I+ +    P     +  V+         ++  + + A VL+       
Sbjct: 346 DYGHHPTEVQATINAVRAGWPE----KRLVMAYQPHRYTRTRDLYEEFAHVLAQVDQLLL 401

Query: 399 ---YNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              Y+     ++G    +L     L  +    +  + + L   +   + DGD+V+ + + 
Sbjct: 402 LDVYSAGEAPIAGADSRSLCRTIRLQSNKEPIFVPSPEALPAALAEIMEDGDLVLTQGAG 461

Query: 454 SCG 456
           + G
Sbjct: 462 NIG 464


>gi|218708487|ref|YP_002416108.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus LGP32]
 gi|254766031|sp|B7VJ04|MURC_VIBSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218321506|emb|CAV17458.1| UDP-N-acetylmuramate-alanine ligase [Vibrio splendidus LGP32]
          Length = 486

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 138/394 (35%), Gaps = 40/394 (10%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+    ++L  L +             IA+ G+ GKTTT  ++T   S            
Sbjct: 107 PIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFV 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
           N  +                I E   S    +      ++P ++++T I   H+  +   
Sbjct: 155 NGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGD 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +     +    L   G   +  DD     L  +      + + ++G S++AD ++  
Sbjct: 210 FETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPQVS----RQVITYGFSEDADIRIEN 265

Query: 263 WKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + Q  +Q    V  +GK ++++  +  G H A N    + + +      +  +KA++   
Sbjct: 266 YVQEGQQGKFTVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTE 325

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R              ++ + Y  +P  +   I          + R + +       
Sbjct: 326 GTGRRFDHLGEYETGKGVAMLVDDYGHHPTEVDVTIQAARS--GWTDKRLVMIF--QPHR 381

Query: 382 GELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETM 430
              ++  + D A VL   ++     V+ +G   +A  D   L R+I         +   +
Sbjct: 382 YSRTRDLYDDFANVLEQVDVLILLDVYSAGEKPIAGADGRSLSRTIRGRGKIDPIFVADI 441

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L   + + +  GD+V+ + +   G  R+   L
Sbjct: 442 NALPSALANVIQGGDLVLTQGAGDVG--RVAKQL 473


>gi|88799422|ref|ZP_01114999.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
 gi|88777732|gb|EAR08930.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
          Length = 480

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 134/390 (34%), Gaps = 38/390 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV    ++L  L +             IAI G+ GKTTT  ++T  +      Y  
Sbjct: 99  DARVPVVRRAEMLAELMRYR---------HGIAIAGTHGKTTTTSLMTAVMGR--GEYDP 147

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS- 198
                  +    + AR+     + I E   S    +      ++P  A++T I   H+  
Sbjct: 148 TFIIGGRLNSAGSNARLGTS-RYLIAEADESDASFLH-----LQPMTAIVTNIDADHMET 201

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E +     E    +   G + L  DD     +         + + S+G +  AD 
Sbjct: 202 YCGDFERLKQTYVEFLHNVPFYGLVVLCTDDDNVRSILPSIQ----RQVMSYGFNDTADV 257

Query: 259 QLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +    ++   Q+   V   G  S+++     G H   N L  + + +         +K L
Sbjct: 258 RAIDIEKKGLQTNFTVLRSGLPSLKIELKMPGDHNVLNALAVIAVATDEGVPDHEIVKGL 317

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F     R +            L+ + Y  +P  ++     +    P    R +A+   
Sbjct: 318 NGFDGVGRRFQVNGEFSTPKGDVLLVDDYGHHPRELQVTFDAIRTGWPE--RRLVALF-- 373

Query: 378 MCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--Y 426
                  ++  + D  +VLS          Y      ++G    +L  ++ +   V   +
Sbjct: 374 QPHRYSRTRDLYEDFVDVLSKVDVLLLLDVYPAGEEPINGADGRSLCRSIRQRGRVDPVF 433

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            E  D +F  +   L DGD+++ + +   G
Sbjct: 434 IEDKDSIFSVLPDVLQDGDILLTQGAGDVG 463


>gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
 gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
          Length = 514

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVAPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPADGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAIVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTPAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 502

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 151/484 (31%), Gaps = 54/484 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   +   +    I   P   ++GI+  S  + P + FF + G    G  ++  AV  
Sbjct: 1   MKTLGSITDVLLHKKISGSPDLEISGIAYHSGKVRPGDLFFCLPGTRSHGRRYVEEAV-- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
                 V      +    S  V  V DV  AL             +  +I +TG+ GKTT
Sbjct: 59  --AAGAVAVVSDMAELETSATVVTVPDVRMALALVSACFYDYPSRELAMIGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARMPVD-VDFGIF 165
           T  ++   L +       +G+   HI                    L RM  + V +   
Sbjct: 117 TTYLIDALLQNSGAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE----KTG 221
           E+    L      T        V+T I   HL      +   ++K+++F        K G
Sbjct: 177 EVSSHALA--WHRTIGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGG 234

Query: 222 ---TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N DD  ++    ++       +  +G S +   +    K   +     ++   
Sbjct: 235 RPRRAVINGDDKHWQHFADQTPG----EVMLYGLSNHCHVRANDVKVERDAVNFRLETPV 290

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E+     G     N L  + +  +   D+      +       G   R+        
Sbjct: 291 GGTEITLKMTGLFSVYNSLAAISVGLLEGIDLARIKAVMESVAGVPG---RFELVDAGQN 347

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FT+I + Y   P  ++  +    + +P    R + V G   +     +    + A   S 
Sbjct: 348 FTVIVD-YAHTPDGLENVLQAAREFAP---ARVLTVFGCGGDRDRTKRPLMGEAAGKYSD 403

Query: 399 YNI---------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           Y I             +    +  L++ + +S +                     DVV++
Sbjct: 404 YCIVTSDNPRSEDPEKIIDEILPGLENQIDKSAY-EIEPDRKAAIRRAMELAQKDDVVII 462

Query: 450 --KS 451
             K 
Sbjct: 463 TGKG 466


>gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei DM98]
 gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 112]
          Length = 514

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVAPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAIVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
 gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
          Length = 485

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 152/456 (33%), Gaps = 46/456 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G++ DSR++   + FFA+ G   DG  FI  A+  GA  +V       +  +  +
Sbjct: 19  ELAVTGLAADSRAVKLGDLFFALAGTKTDGARFIDAAIASGAVAIV----GEHAPATGRV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P     +   AL   A     R  ATI A+TG+ GKT+           +    A IG+ 
Sbjct: 75  PFIATPNPRRALALAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGTI 134

Query: 144 N-----------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                            P+ L R         V     E     L + R     VR   A
Sbjct: 135 GVVTPSRTVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRL--DGVRVRAA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL--NYDDSFFELLKAKSHALGI 244
             T ++  H+     +      K  +F  L E  G   +  ++D S   +  A +  + +
Sbjct: 193 GFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGIAVISTDHDCSHTVIEAANARKVRV 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +        A  +L +         + ++  G+   +    +G    +N L++ G+V 
Sbjct: 253 MRVGRRSDGALAGIRLVEAAIEDFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              +D D      +     EG   R           +  + Y   P ++  A+     + 
Sbjct: 313 GTGSDPDQV---FAALEHLEGARGRLELVGEHNGAPVFVD-YAHKPDALAKAL---LALR 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------LKDA 417
           P+ + + + V G     G    +    L   ++  N   V ++  +  +           
Sbjct: 366 PYAKRKLVVVFG----AGGDRDAGKRPLMGAIAADNADVVIVTDDNPRSEDPAAIRAAIL 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  + +   I   L  GD +++  K 
Sbjct: 422 AAARGACEIGDRAEAIRGAIAG-LQPGDALLIAGKG 456


>gi|300023675|ref|YP_003756286.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525496|gb|ADJ23965.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 437

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 142/362 (39%), Gaps = 16/362 (4%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R R+ ATIIA+TGS  KTTT  +L+  L+   K        N +      L  +  D  +
Sbjct: 32  RERTSATIIAVTGSSAKTTTVALLSHILAGHSKVT-SQFLCNGYGHAIDALLNLRSDTRY 90

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E G    G I     L++P +A+IT +A  H +    IE +A  K+ + E +   G 
Sbjct: 91  SVIEQGTKKPGHIPQAAKLLKPDLAIITLVAIEHYATLKSIEAVAQEKSALVEAVPDDGL 150

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSM 281
           + LN+DD     +  ++ A  I    +FG +   D+     +        + +   G ++
Sbjct: 151 VVLNFDDPNVRAMADRTRARSI----TFGTT-GGDYLATNIRTDVCGLLLLTLTGGGHTI 205

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++    +G H    +         L     T    ++ F P  GR   +      G   +
Sbjct: 206 DLETQLLGAHNWLTIAAAATSALELGVPAQTVRARIASFAPIHGRMSPHTTP---GGTRI 262

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I +   A   S+   +  L  I+     ++  +LG + +    +   + D A   ++   
Sbjct: 263 ILDCAKAPYHSIFLPLETLRSITAP---KKRFILGQISDYAGNATKKYRD-AYAAAVQVA 318

Query: 402 SHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
             V   G      +   A   S        ++ L   ++ + V  +V++VKS+ +    R
Sbjct: 319 DEVCFVGPWAHKARAPQADIDSGKFRAFANIEALAAHLRDTAVKDEVILVKSAKNLHLER 378

Query: 460 LI 461
           L+
Sbjct: 379 LL 380


>gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
 gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
          Length = 477

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/440 (21%), Positives = 160/440 (36%), Gaps = 57/440 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GA  VV +T + A    +       IPV     +L  L +L        
Sbjct: 56  GH---EAAHVAGADAVVTSTAVQADNPEVLSAREKHIPVVPRAVMLAELMRL-------- 104

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             T IAI G+ GKTTT  ++   L+      T+   G  N+        AR+    D+ +
Sbjct: 105 -KTGIAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNS----AGVNARLGQG-DYIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      + P +AV+T I   H+  +      +  A  +    +   GT 
Sbjct: 159 VEADESDASFL-----NLSPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTA 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---- 279
            L  DD     +  +        I S+G  + A+ +    +    Q    VQ +      
Sbjct: 214 ILCTDDPAVRDIVPQVTC----PISSYGFEEGAELRAVNVRAVDGQMHFTVQRRNGVVLP 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
            ++VV +  G H   N L  + +   L        KAL+ F     R +RY       G 
Sbjct: 270 DLDVVLNLAGRHNVLNALSAIAVAVELNIADAVVQKALAGFKGVGRRFQRYGEVRAQDGG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  M A +   +       GRR  VL         ++    D  +V++ 
Sbjct: 330 TFTLIDDYGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFIKVIAQ 385

Query: 399 YNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +    + V+ +G   +   D   L R++ V       + + +  +   I  +  DGDVV
Sbjct: 386 ADAVLLAEVYGAGEAPIVAADGRTLARALRVAGRIEPVFVDDIAAMPQAIADNARDGDVV 445

Query: 448 VVKSSNSCGF--YRLINLLL 465
           +   + S G    +++ +L 
Sbjct: 446 LCMGAGSIGAVPAKVLEMLQ 465


>gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 516

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 163/476 (34%), Gaps = 51/476 (10%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+       VP   V G+++ ++ + P + F A+ G    G  +   A+++GA  V+ + 
Sbjct: 24  AVLADRAAAVPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAVAVLTDA 83

Query: 73  DMVASIG--SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTI 128
             VA +G  + ++P        G L  LA         + T+I ITG+ GKTTT  ++  
Sbjct: 84  AGVAEMGASASAVPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTSGKTTTTYLVEA 143

Query: 129 ALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHL 172
            L +  +T   IG+    I                   L  A     VD  + E+    L
Sbjct: 144 GLRAAGRTAGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVMEVSSHAL 203

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDS 230
              R         +   T ++  HL     + +   AKA++F+         + +  DD 
Sbjct: 204 ALGR--VDGTGFAVGAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVVVCVDDE 261

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGI 288
               +  ++   G   I      + A ++           Q +  +   G    V     
Sbjct: 262 AGRAMAMRAMQGGAAAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHRVGIRLP 321

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G++   N L+ L I+  +    + A             G+       Q F  L+D  Y  
Sbjct: 322 GHYNVANCLVALAILDAVGVSPEQAAPG---LLDTRVPGRMEEIDCGQDFLALVD--YAH 376

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P +++A ++ L++      GRR+AV+      GE        +    +      V    
Sbjct: 377 KPGALRAVLTSLAR-----PGRRLAVV--FGAGGERDPGKRAPMGATAAELADLVVVTDD 429

Query: 408 ---GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              G    A++  +         +  V              +    GDVV+V  K 
Sbjct: 430 NPRGEDPAAIRREILAGAAAGGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGKG 485


>gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 453

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 168/474 (35%), Gaps = 58/474 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + + +      I      +    D R I    E F         GH        K A +V
Sbjct: 4   IAEVLAFEGYRITGSDIAHSAMTD-RLIKAGAEVFI--------GHH---ENNVKDANVV 51

Query: 69  VVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           VV++ +  +   +       +PV    ++L  L +             IAI G+ GKTTT
Sbjct: 52  VVSSAIDETNPEIIAAKAARVPVVRRAEMLAELMRFR---------HGIAIAGTHGKTTT 102

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++    +               IG  L  A     V    F +  +   +  FL   +
Sbjct: 103 TSLIASIYAQAGLDP------TFIIGGLLNSAGSNAKVGKSDFLIAEADESDASFL--HL 154

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P ++VIT I   H+  +   +E++     +    L   G   +  D      L  +   
Sbjct: 155 QPMVSVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRF-- 212

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTL 300
              + + ++G+S +AD+++  + Q +      V   QG+S+    +  G H A N    +
Sbjct: 213 --GRPVITYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLNMPGKHNALNATAAI 270

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +           ++AL  F     R + Y    N+    ++ + Y  +P+ + A I+  
Sbjct: 271 AVAKDQNIANFAILEALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAA 330

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHV 411
            +  P  + R + V          ++  + D  +VL+          Y+     + G   
Sbjct: 331 REGWP--DKRLVMVY--QPHRFTRTRDLYEDFVKVLAEVDQLLLLDVYSAGEEPIVGADS 386

Query: 412 LALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +L  +L  R     +      L   +   L + D+V+ + + + G  +L+  L
Sbjct: 387 KSLCRSLRQRGKEPRHVANSAELASVLADCLQNNDLVLTQGAGNIG--QLVKTL 438


>gi|147678195|ref|YP_001212410.1| UDP-N-acetylmuramate--L-alanine ligase [Pelotomaculum
           thermopropionicum SI]
 gi|189029016|sp|A5D144|MURC_PELTS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146274292|dbj|BAF60041.1| UDP-N-acetylmuramate-alanine ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 461

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 142/407 (34%), Gaps = 49/407 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 +PV    D+L  L +             IA+ G+ GKTTT  M  + L      
Sbjct: 82  EARKRGLPVMHRADLLAWLMRRQKG---------IAVAGAHGKTTTTSMTALVLEKNG-- 130

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  +  I +   L+ +  +   G  E  ++   E       + P I +IT I   H
Sbjct: 131 ------MDPTIVIGGELSEIGGNAKLGRGEYLVAEADESDGSFLKLDPVIEIITNIEDDH 184

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KN 255
           L  +  +E I +A       + ++G      DD     L A       +   ++      
Sbjct: 185 LDYYRSVENILAAFRRFMAKVPESGLAVACLDDPRLRELLA----GYDRPCLTYALDNPE 240

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD+ +R  +   + +  +V  +G  +  +     G H   N +  + +   +    +   
Sbjct: 241 ADYTMRNIRLMRQVTAGDVYYRGGFLGCLELSVPGRHNLSNAMAAVAVGRFVGLAFEGIA 300

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365
            AL  F    G G+R++         +ID+ Y  +P+ +KA +    Q           P
Sbjct: 301 AALKDF---RGAGRRFQLTGEVNGIKVIDD-YAHHPSEIKATLKAAGQVKTGRVVGVFQP 356

Query: 366 HGEGRRIAVLGD-MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           H   R    LG+   E  E +     D+  +  +Y+     + G     +  A+ +    
Sbjct: 357 HRYTR-TLFLGERFGEAFEDA-----DVVIISDIYSAGEKPIEGVSAKTIVSAIEKHNGR 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSN---SCGFYRLINLLLE 466
            V Y  T   +  ++      GD+++   +    S G   L+  L E
Sbjct: 411 KVIYLPTRQEIVDYLVQMARPGDMILTMGAGDIWSAGIE-LVKRLKE 456


>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
 gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
          Length = 494

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 168/475 (35%), Gaps = 48/475 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ +    +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   VV 
Sbjct: 6   LRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             D     G+L+    +PV  ++++   L+ L      +  +   +I +TG+ GKTTT +
Sbjct: 66  QADEATPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELG 168
           +L     ++ KT A +G+  N +   +  +                 +    DF   E+ 
Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G ++     +    AV T ++  HL     +    +AK  +F    + G   +N D
Sbjct: 186 SH--GLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAE-HQVGQKIINAD 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D        +       ++     +  A   +            ++      + E+    
Sbjct: 243 DEVGRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSRL 302

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+L+ L  +  L   ++  +K  S   P  G   R    L  G  T++ + Y 
Sbjct: 303 MGAFNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCG---RMEVFLASGRPTVVVD-YA 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++ A   L+    H  G    V G   +     +     +AE L+      V ++
Sbjct: 359 HTPDALEKA---LAAARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLA----DRVIVT 411

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +         +   L  +  V                    DVV+V  K 
Sbjct: 412 DDNPRSEDPQAIVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKG 466


>gi|224368385|ref|YP_002602548.1| MurC [Desulfobacterium autotrophicum HRM2]
 gi|259509767|sp|C0Q8P4|MURC_DESAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|223691101|gb|ACN14384.1| MurC [Desulfobacterium autotrophicum HRM2]
          Length = 456

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/412 (20%), Positives = 149/412 (36%), Gaps = 43/412 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   V      SI      ++L  L ++  A         IA++G+ GKT+T  M+
Sbjct: 73  AISKNNPEVIEAAERSIRTIPRAEMLAELMRIKYA---------IAVSGAHGKTSTTAMI 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L+         +G     IG              G + +  +   +  FL +   P 
Sbjct: 124 ATILNQAGLDPTVVVGGLLKSIGT-------NAHHGKGDYIVAEADESDGSFLKYA--PA 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA +T I   HL  +  IE+I     +    +   G   L  D+   + +  +  A    
Sbjct: 175 IAAVTNIDLEHLDFYKDIEDIKDNFVKFINSVPFYGLAVLCLDNEHIQAILPRITA---- 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              +FG S  AD   R  +    + +  V    + + ++  +  G H   N L  + +  
Sbjct: 231 RYTTFGLSAQADLAARGIRFEGRRGYFTVVHGKEVLGDITLNLSGKHNISNALAAIAVAL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D     +A       EG  +R      +   T++D+ Y  +P  +K   + L+ + 
Sbjct: 291 ELKVDFSVIKEA---LEQIEGVKRRLEIKGERNSITVVDD-YGHHPTEVK---TTLAAVR 343

Query: 365 PHGEGRRIAVLGDMCEM-------GELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKD 416
                +R+ V+              E +++F+  DL  VL +Y  S   + G   L L +
Sbjct: 344 EGWPDKRVVVVFQPHRYSRTKALFDEFTRAFYQSDLLFVLPIYAASEQPIDGIDSLKLCN 403

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +    H  V   +  +     +  +L  GD+V+   +     Y L   LLE
Sbjct: 404 GIQEHGHKNVICVKDFESCLSILSDTLEPGDLVLTLGAGDV--YNLGETLLE 453


>gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
 gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
          Length = 500

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 149/425 (35%), Gaps = 36/425 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-A 65
            H LL+ +       + +  V+ IS DSR + P   F  + G   DG  +   A++ G  
Sbjct: 5   LHPLLRDVGLQVPEALGEATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRSALKSGAC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTTT 122
             VV      A   S + PV  V+  +     L  AA       +  +I +TG+ GKTTT
Sbjct: 65  AAVVGTAAAAADPPSTTDPVVVVEGPVARWAGLLAAAFWGEPSQRLALIGVTGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             ++    ++     A  G+  N        A+                       G  E
Sbjct: 125 THLIEHLAATAGTPAALFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAADAGARIGAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGT-- 222
           +    L + R      R   AV T +   HL     +E   +AKA +F    L ++ T  
Sbjct: 185 VSSHALDQQR--VAGCRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPLLLESATPN 242

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L   +  LG +   S  +  +A  ++   +  S      +     +  
Sbjct: 243 AVVNGDDPWGAQL---ARQLGERCWTSSLEDPSAHLRIDSLEMDSSGVRGRLVTPLGAGH 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G     N+L  +G ++     +   ++ L+ F    GR +R      +    ++
Sbjct: 300 FRSPLLGRFNLMNLLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGREDQPAVL 359

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P  ++   + L    P   GR I V G     G+  +     +  + +     
Sbjct: 360 VD-YAHTPDGLE---NALRASRPFTRGRLICVFGC---GGDRDRGKRPQMGAIAARLADR 412

Query: 403 HVWLS 407
            V  S
Sbjct: 413 VVVTS 417


>gi|90580229|ref|ZP_01236036.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
 gi|90438531|gb|EAS63715.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
          Length = 487

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 156/425 (36%), Gaps = 50/425 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T +      L       IPV    ++L  L +             IAI G+
Sbjct: 80  QGASVVVASTAISKENPELMAATELRIPVVRRAEMLAELMRYR---------HGIAIAGT 130

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  + T   S      T+   G     +    T AR+     + I E   S    
Sbjct: 131 HGKTTTTALTTQIYSEAGLDPTFVNGG----LVKSAGTNARLGCS-RYLIAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P + V+T I   H+  +    E +     +    L   G   +  DD    
Sbjct: 186 LH-----LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            L  +      + + ++G +++AD ++  + Q  +Q    V  + K ++ +  +  G H 
Sbjct: 241 ELLPRV----GRPMLTYGFAEDADVRITNYTQMGQQGHFTVLRKDKPALNITLNIPGKHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N    + + +    D D  ++AL  F     R              ++ + Y  +P+ 
Sbjct: 297 ALNATAAIAVATEEGVDDDAIMRALIEFEGTGRRFDHLGEFETGNGNVMLVDDYGHHPSE 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           +   I      +   + R + +          ++  + D A VL   ++     V+ +G 
Sbjct: 357 VDVTIQAAR--AGWADKRLVMIF--QPHRYSRTRDLYDDFANVLDQVDVLVMLDVYSAGE 412

Query: 410 HVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             +A  D  AL R+I         +    + L   + + + + D+V+ + +   G  ++ 
Sbjct: 413 APIAGADGRALCRTIRSRGKIDPIFVPEAEELPAILANIIQNDDLVLTQGAGDVG--KIA 470

Query: 462 NLLLE 466
             L E
Sbjct: 471 RQLAE 475


>gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
 gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
          Length = 465

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 163/437 (37%), Gaps = 50/437 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D    AL+ F+    R +RY       G    + 
Sbjct: 272 LNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +     DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCGF--YRLINLLLEE 467
            S G    +L+  + ++
Sbjct: 448 GSIGGVPAKLVQHIQQK 464


>gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
 gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
          Length = 499

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 60/482 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-PHYDGHD-FILHAVQK 63
           TF ++     G++         +G  +DSR +   + F A+      D    F  +A+ +
Sbjct: 4   TFSEIY---PGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKTRIFAENALSQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGK 119
           GA  ++  +D+  +   +         V   +           R  + A I+A+TG+ GK
Sbjct: 61  GALGIISESDLGVTTAWVC------PQVRQWMGGWQKQYLQATRPVNSARILAVTGTNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFG 163
           TT   ++   +S  K+  A +G+  N I   L  +                      +F 
Sbjct: 115 TTISRLIAELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFV 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E     L + R   +     IA+ + ++  HL     +   A AKA +F+        
Sbjct: 175 ALEASSHGLEQGRL--NGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFKFATLRS-A 231

Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD +  ++   + A   +  I ++  +   AD+++       + +  ++       
Sbjct: 232 VINLDDDYAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLKGAKFKLIAPTGEY 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G    +N++ +L  V      +   +  +       GR +  R         L
Sbjct: 292 VVQSPLLGQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIR-----DAERL 346

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P ++   +  L +   H + +  A+ G   +     +          +L + 
Sbjct: 347 FVVDYAHTPDALTQVLVTLKR---HVQHQLWAIFGCGGDRDRGKRPLMTQ----AALNDA 399

Query: 402 SHVWLSGFHVLAL----------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             V L+  +               +    + HV           +       GD+VV+  
Sbjct: 400 DPVILTSDNPRTESPEQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
 gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
          Length = 488

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +           +  + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGNSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  + V  +  G H A N    + + +    + +  +
Sbjct: 256 ADVRVENYRQTGAQGHFTLVRQDKPELRVTLNAPGRHNALNAAAAVSVATEEGIEDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A +       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAARAGWPEKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR 420
             + +          ++  + D A VLS          Y      + G    +L   +  
Sbjct: 375 -LVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSLCRTIRA 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKVDPILVSDPAQVAAMLAPVLSGNDLILVQGAGNIG--KIARQLAE 477


>gi|83592285|ref|YP_426037.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
 gi|109892732|sp|Q2RVU5|MURC_RHORT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83575199|gb|ABC21750.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
          Length = 481

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 145/425 (34%), Gaps = 49/425 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V    +  +PV    ++LG L +L            IA+ G+ GKTTT  +
Sbjct: 75  SAVKASNPEVMDARARFLPVVRRAEMLGELMRL---------KWSIAVAGTHGKTTTTSL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +       I   N  I             ++ + E   S           +   
Sbjct: 126 VAQLLDAAGLDPTVI---NGGILNARGTNAYLGTGEWMVVEADESD-----GTFTKLPAT 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+++T I P HL  +   +++  A       L   G   +  D    + +  +   L  +
Sbjct: 178 ISLVTNIDPEHLDFYGTFDKVREAFRAFIHNLPFYGFACMCIDHPEVQAMIPQ---LQDR 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLM 298
            I ++G S  AD +          +  +V L  ++         +     G H   N L 
Sbjct: 235 KIITYGLSPQADIRGANVTLGPRGARFDVILTDRAGGGSRTIEGIRLPMYGRHNVLNALG 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI- 357
            +GI + +  D       L  F   +   +R+    + G  T+ID+ Y  +P  + A + 
Sbjct: 295 AIGIAAEMGIDDAVIRDGLYHFEGVK---RRFTRTGDAGGVTVIDD-YGHHPVEIAAVLK 350

Query: 358 --------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                    V++ + PH   R  ++  D C     +         V  +Y      + G 
Sbjct: 351 AARDATEREVIAVVQPHRYSRLNSLFEDFCTCFNDADQ-----VVVADVYAAGEQPIPGA 405

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              AL + L    H  VH       L   I      GD+VV   + S   +   N L ++
Sbjct: 406 SKEALAEGLKVHGHKSVHVLTNEQALPELIARIAKPGDLVVCLGAGSISTW--ANALPKQ 463

Query: 468 FPAIQ 472
             A+Q
Sbjct: 464 LEAVQ 468


>gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 514

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 157/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRAHVAPGA---QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   +   + G  S     V   D L                  + +TG+ GKT+  + 
Sbjct: 69  VLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQW 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++++  A IG+  + +   L               +LA++       +  E+  
Sbjct: 129 IAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSS 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     +AV T +   HL      E   +AKA++F          +N DD
Sbjct: 189 HALHQGR--VNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRCAVVNRDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-----KNAD--FQLRKWKQCSEQSWMEVQLQGKSME 282
                L A     G     ++G        +AD        +  +  +   V       +
Sbjct: 246 PAGRRLLANLA--GRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R      Q    L+
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRL-GGRLQNDEPLV 362

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    G  I + G   +     +     +AE L+     
Sbjct: 363 VVDYAHTPDALEKTLDALRPIAQARSGELICMFGCGGDRDATKRPLMGAIAERLA----D 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
 gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
          Length = 520

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 161/461 (34%), Gaps = 51/461 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+A  +AFFA      D   FI  A+++GA  V+V  +        S+     
Sbjct: 30  HLHADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFGGTLDASVAHAVP 89

Query: 89  DDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                A    +   R  S A + + ITG+ GKT+  + +  ALS++    A +G+    +
Sbjct: 90  ALNELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGTLGTGL 149

Query: 148 GVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITT 191
              L               +LA++       +  E+    L + R   +     IAV T 
Sbjct: 150 VGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDIAVFTN 207

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL          +AK  +F    +     +N DD+    L A +H  G     ++G
Sbjct: 208 LTQDHLDYHGTFAAYETAKTRLFAW-PELRAAVINRDDAAGRRLLASTH--GHARTIAYG 264

Query: 252 K-----------SKNAD--FQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNML 297
                       +  AD        +  +  +   +        EV    +G     N+L
Sbjct: 265 IEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNTSDWGHAEVEVQTLGLFNVSNLL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             LG++       D A+  L+      GR +R      Q    L+   Y   P +++  +
Sbjct: 325 AVLGVLLAADVPFDAALAELAKLESVNGRMERL-GGRLQNDEPLVVIDYAHTPDALEKTL 383

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             L  I+    G  + + G   +     +     +AE L+     +V ++  +  +    
Sbjct: 384 EALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DNVVVTSDNPRSENPL 439

Query: 414 -----LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
                +   +  +      E     +   I+ +  +  +V+
Sbjct: 440 AIIEQIVAGMQDASKARRIEDRASAILQAIRGAAREDVIVL 480


>gi|315181129|gb|ADT88043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 486

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 140/401 (34%), Gaps = 40/401 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  ++T   S     
Sbjct: 100 AAREKRIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +                I E   S    +      ++P   ++T I   H
Sbjct: 151 ---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMATIVTNIEADH 202

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E +     +    L   G   L  DD     L  +      + + ++G S++
Sbjct: 203 MDTYGGDFETLKQTFVDFLHNLPFYGQAILCVDDPVVRELIPRIS----RHVITYGFSED 258

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q  +Q    V  QG+ ++++  +  G H A N    + + +      D  +
Sbjct: 259 ADVRIENYRQEGQQGKFTVVRQGRANLDITLNIPGRHNALNASAAIAVATEDDIHDDVIL 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A++       R              ++ + Y  +P  +   I+     +   + R + +
Sbjct: 319 RAMANTQGTGRRFDHLGEFDTGNGDVMLVDDYGHHPTEVGVTIAAAR--NGWADKRLVMI 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKDA--LPRSIHVH---- 425
                     ++  + D A VL   ++     V+ +G   +A  D   L R+I       
Sbjct: 377 F--QPHRYTRTRDLYDDFANVLEQVDVLLMLDVYSAGEKPIAGADGRSLCRTIRSRGKLD 434

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 435 PIFVPDSKTLPSVLANVLQDGDLVLTQGAGDIG--KVAREL 473


>gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama
           I]
 gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama
           I]
 gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS]
          Length = 468

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 163/431 (37%), Gaps = 57/431 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GAG +V +T +      +       IPV     +L  L +L        
Sbjct: 56  GHD---RANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L++        G  +    +   L     +   G  E
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAA--------GGLDPTFVIGGRLTSAGANARLGQGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
             +    E       + P +A++T I   H+  +   +  + SA  E  + L   G+  L
Sbjct: 156 YIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----- 280
             DD+    +         + I ++G S +A    +  +    +    VQ + +      
Sbjct: 216 CADDANVREIM----PFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTVQRRDRDVVLPA 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALN 335
           ++V  +  G H  +N L  + + + L  D     +AL+ F     R  ++       A  
Sbjct: 272 LQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQWGDLPVPAAHG 331

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTL+D+ Y  +P  M A ++      P    RRI VL         ++    D   V
Sbjct: 332 GGIFTLVDD-YGHHPVEMAATLAAARGAWPQ---RRI-VLAFQPHRYTRTRDCFEDFVRV 386

Query: 396 LSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   +   ++ V+ +G   L   D  AL R++ V       + E +  L   I   + DG
Sbjct: 387 LGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDG 446

Query: 445 DVVVVKSSNSC 455
           DVVVV  + S 
Sbjct: 447 DVVVVMGAGSI 457


>gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
 gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
          Length = 515

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 165/461 (35%), Gaps = 49/461 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   + F A      D    + +A+ +GA  V+V  +  A I +L   V   
Sbjct: 30  QLHADTRSLRAGDVFLAYAVDGADNRPHLANALSRGAAAVLVQPEGYAGIDALDPAVALA 89

Query: 89  DDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              L AL                 +I +TG+ GKT+  + +  AL+++++  A IG+  +
Sbjct: 90  VPGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIATALTALRRPCAVIGTLGS 149

Query: 146 HIGV---------------PLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVI 189
            +                   +LA++  D    +  E+    L + R   +     +AV 
Sbjct: 150 GMPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGR--VNGTAFDVAVF 207

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL      E   +AKA++F          +N DD+    L A     G     +
Sbjct: 208 TNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRHAIINRDDAAGGRLLATLA--GRVRTVA 264

Query: 250 FGKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +G    AD           + +  +  +   +       ++    +G     N+L  L  
Sbjct: 265 YGIGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLFNVSNLLAVLAT 324

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +     D A+  +       GR +R    ++     ++ + Y   P +++  +  L  
Sbjct: 325 LLVADLPFDAALAEMRRLESVNGRMQRLGGRIDHDEPLVVVD-YAHTPDALEKTLEALRP 383

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417
           I+    G  + + G   +     +     +AE L+      V ++         LA+ + 
Sbjct: 384 IAEARGGALVCMFGCGGDRDTTKRPLMGAIAERLA----DRVVVTSDNPRSEAPLAIIEQ 439

Query: 418 LPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   +H         +    +   ++ +  + DVV++  K 
Sbjct: 440 IASGMHAPDGALRIEDRASAILQAVRGAARE-DVVLLAGKG 479


>gi|186477420|ref|YP_001858890.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phymatum
           STM815]
 gi|229486477|sp|B2JHF9|MURC_BURP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|184193879|gb|ACC71844.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia phymatum STM815]
          Length = 464

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 159/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       IP+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L
Sbjct: 158 VAEADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVV 284
             DD   + +         K I  +G + +A  +    +    +     ++     +++V
Sbjct: 216 CVDDPNVKEIL----PFVSKPIIRYGFAPDAQVRAVNVEAREGKMHFTAMREDAPPIDIV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY    +  G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVTVTSGGAYTLV 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I+      P     +  VL         ++    D  +VLS  +   
Sbjct: 332 DDYGHHPVEMAATIAAARGAFPD----KRLVLAFQPHRFTRTRDCFEDFVKVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +   D   L R+I V       + +T+D +   + + + DGDVV+   +
Sbjct: 388 LTEVYSAGEAPIVAADGRSLTRAIRVAGKVEPVFVDTVDEVPDALGAIVRDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 157/432 (36%), Gaps = 49/432 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI-----PVFGVDDVLGA------LNKLAVAARLRS 106
              + KGA + + +         L +     P   V+ V         L++  + ARL +
Sbjct: 44  EKLIAKGARVYLGHEASHVEGADLVVYSTALPKDNVEIVAAEARNIPILHRSQMLARLMN 103

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   IA+ G+ GKTTT  M+ + +             +    +   +  +  +   G  E
Sbjct: 104 ERKGIAVAGAHGKTTTSSMIALVMEKCGA--------DPTYIIGGEIMNIGSNAKAGTGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P +A++  I   HL N+ G  E +  A A+    ++  G   +
Sbjct: 156 YVVAEADESDGTFLQYYPTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGGKAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD++   +     +     + ++G   +AD+Q         +    V  +G+++ ++ 
Sbjct: 216 CKDDAYIREMIPYVES----EVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENLGKIE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L TL I        D    A+  FH   G  +R++         +ID+
Sbjct: 272 LSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFH---GAKRRFQVMGEINDILIIDD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE---LSQSFHIDLAEVLSLYNI 401
            Y  +P  + A IS          G+RI V+           L + F     E      I
Sbjct: 329 -YAHHPTEISATISAAKAT-----GKRIIVVFQPQRYTRTFFLFEQFSRCFGE-ADEVII 381

Query: 402 SHVW-------LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           + ++       + G     L D + ++ H    Y    + +   +   +  GD+V+   +
Sbjct: 382 TDIYSPAGEKQIEGVSSAKLVDMIRQNSHANAEYMPKSEDVLAHLIDHVKPGDLVITMGA 441

Query: 453 NSCGFYRLINLL 464
            +   +R+ + L
Sbjct: 442 GNI--WRVADTL 451


>gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis
           12822]
 gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica
           RB50]
 gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis]
 gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica
           RB50]
          Length = 468

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 163/431 (37%), Gaps = 57/431 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GAG +V +T +      +       IPV     +L  L +L        
Sbjct: 56  GHD---RANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L++        G  +    +   L     +   G  E
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAA--------GGLDPTFVIGGRLTSAGANARLGQGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
             +    E       + P +A++T I   H+  +   +  + SA  E  + L   G+  L
Sbjct: 156 YIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----- 280
             DD+    +         + I ++G S +A    +  +    +    VQ + +      
Sbjct: 216 CADDANVREIM----PFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTVQRRDRDVVLPA 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALN 335
           ++V  +  G H  +N L  + + + L  D     +AL+ F     R  ++       A  
Sbjct: 272 LQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQWGDLPVPAAHG 331

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTL+D+ Y  +P  M A ++      P    RRI VL         ++    D   V
Sbjct: 332 GGTFTLVDD-YGHHPVEMAATLAAARGAWPQ---RRI-VLAFQPHRYTRTRDCFEDFVRV 386

Query: 396 LSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   +   ++ V+ +G   L   D  AL R++ V       + E +  L   I   + DG
Sbjct: 387 LGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDG 446

Query: 445 DVVVVKSSNSC 455
           DVVVV  + S 
Sbjct: 447 DVVVVMGAGSI 457


>gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
 gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
          Length = 470

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 143/402 (35%), Gaps = 44/402 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V      V +     IPV    ++L  L +L            IA+ G+ GKTTT  +L
Sbjct: 86  AVTNENPEVVAARERGIPVIPRAEMLAELMRLR---------NGIAVAGTHGKTTTTSLL 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +           Y+  + +   L         G  E  ++   E       + P  
Sbjct: 137 ATIFTEAG--------YDPTVIIGGRLNAYGAGARLGQGEYLIAEADESDGSFLCLSPIA 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +V+T +   HL +++ +  I  A  +   G+   G   +  DD     L  + +    + 
Sbjct: 189 SVVTNVDADHLDHYADLAAIDDAFVDFLNGIPFYGVNVVCLDDPGVARLLPRVN----RP 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I ++G +  A  + +  +     S   V L GK + E+     G H   N L  +G+   
Sbjct: 245 ILTYGVTSQARLRGKILE-TGAASRFSVTLDGKDLGEMRLAHPGRHNVLNALGAIGLSLE 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS---- 361
              ++     AL+ F    G G+R+     +    ++D+ Y  +PA ++A ++       
Sbjct: 304 AGIELPVIAAALAKFG---GVGRRFERKGERNGVVVVDD-YGHHPAEIRATLATARTVYP 359

Query: 362 ------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+ GD C   E +         +  +Y  S   + G    +L 
Sbjct: 360 DRRLVVAFQPHRFSRTKALFGDFCTCFEAADEL-----LLTEIYPASEAPIPGVSGESLA 414

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + +    +V Y      +   +   +  GD+++   + S 
Sbjct: 415 QGIRQVSKTNVSYYRDFPAMEEALPGIVRPGDLLLTLGAGSV 456


>gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
 gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
          Length = 499

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 163/485 (33%), Gaps = 66/485 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD-----FILHA 60
           TF+++     G++         +G  +DSR +   + F A+       H      F  +A
Sbjct: 4   TFNEIY---PGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLS---HSNKTRIFAENA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGS 116
           + +GA  ++  +D+  +   +         V   +          ++      I+A+TG+
Sbjct: 58  LSQGALGIISESDLGVTTAWVC------PQVRQWMGGWQKQYLQATQPVNSARILAVTGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DV 160
            GKTT   ++   +S  K+  A +G+  N I   L  +                      
Sbjct: 112 NGKTTISRLIAELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGA 171

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +F   E     L + R         IA+ + ++  HL     +   A AKA +F+     
Sbjct: 172 NFVALEASSHGLEQGRL--DGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFKFATLR 229

Query: 221 GTIFLNYDDSFFELLKAKSHALGIK-TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +N DD +  ++   + A   +  I ++  +   AD+++       E +  ++    
Sbjct: 230 S-AVINLDDDYAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLEGAKFKLIAPT 288

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V    +G    +N++ +L  V      +   +  +       GR +  R       
Sbjct: 289 GEYVVQSPLLGQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIR-----DV 343

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L    Y   P ++   +  L +   H + +  A+ G   +     +          +L
Sbjct: 344 ERLFVVDYAHTPDALTQVLVTLKR---HVQNQLWAIFGCGGDRDRGKRPLMTQ----AAL 396

Query: 399 YNISHVWLSGFH---------VLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +   V L+  +            +K+ +   + HV           +       GD+VV
Sbjct: 397 NDADPVILTSDNPRTESPEQIFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVV 456

Query: 449 V--KS 451
           +  K 
Sbjct: 457 IAGKG 461


>gi|289579389|ref|YP_003478016.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
 gi|289529102|gb|ADD03454.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
          Length = 464

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 162/423 (38%), Gaps = 47/423 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP      +LG + K             IA++GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRATLLGLIMKKYKYG--------IAVSGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++    +         Y+  + V   +  +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVIFDGMG--------YDPTVLVGGEVDVIGGNVRVGNSEYFVTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDGYVVACKDDANTMYVVN 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQN 295
             +    K I ++G  +++D++ +  +   +  +  +V  + + M        G H   N
Sbjct: 231 GLN----KNIVTYGIYEDSDWKAKNIRFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKA 342

Query: 356 AISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +                PH   R  A+L +  E  + +    I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKALLNEFAESFDNADK--IIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S   ++ L     +   V Y +  D +  ++  +   GD+V+   + +   Y +  + L+
Sbjct: 401 SSKDLVEL--ISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVLTIGAGNI--YEVGEMFLK 456

Query: 467 EFP 469
           ++ 
Sbjct: 457 DYK 459


>gi|206890895|ref|YP_002249131.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742833|gb|ACI21890.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 456

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 144/417 (34%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +    SL IPV    ++L  L +L            I + G+ GKTTT   
Sbjct: 71  SAVKPDNPEIIKARSLGIPVIPRAEMLAELCRLKY---------SILVAGAHGKTTTTSF 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS           ++  I +   L  +  +   G  E  ++   E       + P 
Sbjct: 122 IATILSDAG--------FDPTIVIGGKLKSIGTNAKLGQGEFLVAEADESDGSFLKLSPA 173

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           ++VIT I   HL  F  ++ I  A  E    +   G   L  +      L         +
Sbjct: 174 VSVITNIDREHLDYFKNLKRIKKAFLEFANKVPFYGVSVLCRECRHIRDLIPHL----TR 229

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G  + +DF  +  +  S +   +   + K +        G H   N L T+ +  
Sbjct: 230 RYVTYGFDEASDFCAKNIEYSSSKVLFDAFFRNKFLGRFAITVPGNHNVLNALATIAVAK 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L+  ++   ++L  F    G  +R+     +      D+ Y  +P  +KA I     + 
Sbjct: 290 ELSIPIEKVRESLENFT---GISRRFEFKGEKNGVKFYDD-YGHHPTEIKAVIKTALWLK 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHI------------DLAEVLSLYNISHVWLSGFHVL 412
           P     R+ V+                           D+  ++ +Y  S   + G    
Sbjct: 346 PQ----RLCVIFQPHRYTRTRDLMEQFIQVFKTTLRKNDVLFLMDIYAASEPPIEGVSAE 401

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L + L    ++V ++   + + + I   L +GD+V    +     Y++   + E+ 
Sbjct: 402 ILYEKLKNVGVNVIFNPDKEDIKIDILRELKEGDLVFTIGAGDV--YKVGESIKEKL 456


>gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
 gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
          Length = 504

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 138/457 (30%), Gaps = 45/457 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                    I+  SRS   Q  F A+ G H +   ++  A  +GA  ++        +  
Sbjct: 25  GNANIVFRDIATHSRSCNRQTLFVALSGSHREEGAYLRQAAAQGAAGIL----TDFPLSD 80

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           L+ P   V +V      L    A R   +     +TG+ GKTT   ML   + +  +   
Sbjct: 81  LATPQCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKTTVTWMLRSIVKAANENCG 140

Query: 139 CIGSY----NNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHI---- 186
            +G+       H   P TL      V       + + G +    I   +H +        
Sbjct: 141 LLGTIEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAAA-IEVSSHAIDQDRLSGV 199

Query: 187 ----AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                +IT I   HL     + + A  KA I   L+    + +N DD     L       
Sbjct: 200 SLAGGIITNITHDHLDYHGSLSKYAEVKARIANLLQDDAPLVVNGDDCNIRNLLPHLP-- 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 + G  K   +++   +Q  + +   +    +   +     G H   N      +
Sbjct: 258 --PETITVGFDKRNSYRIEIQEQTLQGTAFRLSPGTEGAVLRCPVPGRHNVYNAAFAAVL 315

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +++    L+   P  GR +          F      Y   P ++   +  L  
Sbjct: 316 AQAAGYSLESISAGLASLVPPPGRLQPVETCQPFSCFV----DYAHTPDAIAQTLQSLRS 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           ++   +GR I + G     GE  +     +A      +I  +             L    
Sbjct: 372 VT---KGRLICLFGA---GGERDREKRPRMARAAEQADIVVLTADNSRREPTAQILEEIQ 425

Query: 421 ------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 +  V  +                GD V++  
Sbjct: 426 AGFSDAAPEVFVNADRSQAIQLAVKLAEPGDCVLILG 462


>gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
 gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
          Length = 464

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 128/393 (32%), Gaps = 39/393 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + +S D+R I+P   F AI G  +D H  +   +  G     +    V    +L +
Sbjct: 18  DVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGKIAGALCQHPVDGPNTLVL 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P     +   A+          +   ++ +TG+ GK++T   L     ++    A IG+ 
Sbjct: 78  PDLAEREATIAVA---AYGNPSAALKVVGVTGTNGKSSTISYLRQVYQALGHRTATIGTL 134

Query: 144 NNHIGVPLT---------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              I    +               +  + +        + +S           +R H A+
Sbjct: 135 GYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIALGRVQGIRFHGAI 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T + P HL     +++    K  +F        I           +  K   L    + 
Sbjct: 195 FTNLTPDHLDFHGTMDDYLQTKLRLFTPAPPYAII-------HTRRIPRKLPPLPG--VL 245

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           SFG  ++AD    + +   E       LQG+         G    +N+            
Sbjct: 246 SFGPGEDADIPTTEQQVSPEGIRF--CLQGQIY--RSPLRGRGNLENVQAVAAFCHHEGQ 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +     +A++   P EGR        + G   +ID  Y   P +++    +L        
Sbjct: 302 ERQQVARAIAALRPIEGRFMPI---SHNGRHGIID--YAHTPDALE---QLLKSTREICH 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           GR I V G   +  +  +     +A  L+   I
Sbjct: 354 GRLIVVFGCGGDRDKTKRPLMGAIASELADICI 386


>gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
 gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
          Length = 465

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 164/425 (38%), Gaps = 50/425 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARAQRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRTPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTLI 342
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY      + G +TLI
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLI 331

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           D+ Y  +P  M A I   +       GRR  VL         ++    D   VLS  +  
Sbjct: 332 DD-YGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDAL 386

Query: 402 --SHVW------LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
             + V+      ++  +  AL  AL  +  V   + ET+D L   +     DGDVV+   
Sbjct: 387 VLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMG 446

Query: 452 SNSCG 456
           + S G
Sbjct: 447 AGSIG 451


>gi|28871542|ref|NP_794161.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966566|ref|ZP_03394717.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|302059793|ref|ZP_07251334.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131740|ref|ZP_07257730.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999568|sp|Q87WY6|MURC_PSESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28854793|gb|AAO57856.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928416|gb|EEB61960.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|331016735|gb|EGH96791.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 486

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 163/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H++ +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S+++D +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVRDIL----PLVKRPTMTYGFSEDSDVRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A IS +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGHVMLVDDYGHHPREVAAVISAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 AEANVLLLMEVYPAGEEPVPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +    
Sbjct: 451 ILLCQGAGDIA 461


>gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 496

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 172/465 (36%), Gaps = 47/465 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S
Sbjct: 16  DAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDAS 75

Query: 81  LS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+KL      +  +   ++ +TG+ GKTTT ++L      + 
Sbjct: 76  MVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWAKMLG 135

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--- 237
            +    AV T ++  HL     +    +AK  +F   +      +N DD           
Sbjct: 196 ALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLGQLP 254

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A+ ++     G +        +       + +         ++    +G     N+L
Sbjct: 255 QAVAVSMENNIPVGWN-GPWLSASQVHYHDNGASIAFDSSWGESQLESRLMGAFNVSNLL 313

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L  +  L   +   + A     P  GR + +    N      +   Y   P +++ A 
Sbjct: 314 VALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA- 368

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             L     H +G+   V G   +  +  +     +AE L+      V ++  +  +    
Sbjct: 369 --LVAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQ 422

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             + D L   +   +++ + G    + S++      DVV++  K 
Sbjct: 423 AIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 467


>gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
 gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
          Length = 465

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 157/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD +     +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHDAVNI---EGANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V   G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIRDGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D    AL+ F+    R +RY       G    + 
Sbjct: 272 LNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPAADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   ++    DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAISTANGDALSRALRTVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|121595960|ref|YP_987856.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|222112148|ref|YP_002554412.1| UDP-N-acetylmuramate--l-alanine ligase [Acidovorax ebreus TPSY]
 gi|166222950|sp|A1WC05|MURC_ACISJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765998|sp|B9MFR1|MURC_DIAST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120608040|gb|ABM43780.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|221731592|gb|ACM34412.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax ebreus TPSY]
          Length = 477

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 157/421 (37%), Gaps = 48/421 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV     +L  L +L            IAI G+ GKTTT  ++
Sbjct: 73  AVQADNPEVLAARERKIPVVPRALMLTELMRLRKG---------IAIAGAHGKTTTTSLV 123

Query: 127 TIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L       T+   G  N+      T A++    ++ + E   S    +  L     P
Sbjct: 124 ASVLGEAGLDPTFVIGGRLNS----AGTNAKLGQG-EYIVVEADESDGSFLNLL-----P 173

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +AV+T I   H+  +      +  A  +    +   GT  L  D+     +      L 
Sbjct: 174 VMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCIDNPAVRDIL----PLV 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMT 299
              + S+G S++A+ +    +    Q    VQ +       ++VV +  G H   N L  
Sbjct: 230 TCPVTSYGLSEDAEVRAVDVRAVGTQMHFTVQRRNGVTLPDLQVVLNLAGEHNVLNALAV 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS 358
           + + + L    D  ++AL+ F     R +R+       G    + E Y  +P  M A + 
Sbjct: 290 IAVAAELNVPDDALLRALAGFTGVGRRFQRHGDLPAQGGGHFTLIEDYGHHPVEMAATL- 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALK 415
             +       GRR  VL         ++    D  +VL   +    + V+ +G   +   
Sbjct: 349 --AAARGAYPGRR-LVLAFQPHRYSRTRDCFEDFVKVLGTADAVLLTEVYAAGEAPIVAA 405

Query: 416 DA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLL 465
           D   L R++ V       + + +  +   I +   DGDVV+   + S G    ++++LL 
Sbjct: 406 DGRSLARALRVAGTVEPVFIDNVADMPQRIAAGARDGDVVLCMGAGSIGGVPAKVVDLLQ 465

Query: 466 E 466
           +
Sbjct: 466 K 466


>gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N]
 gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N]
          Length = 468

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 152/428 (35%), Gaps = 54/428 (12%)

Query: 57  ILHAVQKGA--------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +  A          V  +   V +     IPV     +L  L +L          
Sbjct: 55  IGHAAENVADADAIVTSTAVAGDNPEVIAARLARIPVVPRAVMLAELMRLKRG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++   L++        G  +    +   L     +   G  E  
Sbjct: 108 --IAVAGTHGKTTTTSLVASVLAA--------GGLDPTFVIGGRLNSAGANAQLGQGEFI 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           +    E       + P +A+IT I   H+  +   +  + SA  E  + L   G+  L  
Sbjct: 158 VVEADESDASFLNLLPVMAIITNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCA 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282
           DD+    +         + I ++G S +A  +    +    +    V+ QG+      +E
Sbjct: 218 DDANVREIM----PFVSRPITTYGLSSDAQVRAENVQADGTRMRFSVRRQGREQDLPTLE 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGF 338
           V  +  G H  +N L  + + S L        +AL+ F          G+        G 
Sbjct: 274 VELNLPGLHNVRNALAAIAVASELGVADAAICQALAGFKGVGRRFTQWGEFPVAEAQGGG 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  M A +   +        RRI VL         ++    D   VL  
Sbjct: 334 RYSVIDDYGHHPVEMAATL---AAARGAWPDRRI-VLAFQPHRYTRTRDCFEDFVRVLGT 389

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +    + V+ +G   L   D  AL R++ V       + E +  L   ++  + DGDV+
Sbjct: 390 ADAVLLTEVYAAGEAPLVAADGRALARALRVAGKVEPLFVEDVAALPQAVRDFMRDGDVL 449

Query: 448 VVKSSNSC 455
           ++  + S 
Sbjct: 450 ILMGAGSI 457


>gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894]
          Length = 488

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +           +  + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGNSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  + V  +  G H A N    + + +    + D  +
Sbjct: 256 ADVRVENYRQTGAQGHFTLVRQDKPELHVTLNAPGRHNALNAAAAVSVATEEGIEDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A +       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAARAGWPEKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR 420
             + +          ++  + D A VLS          Y      + G    +L   +  
Sbjct: 375 -LVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSLCRTIRA 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKVDPILVSDPAQVAAMLAPVLSGNDLILVQGAGNIG--KIARQLAE 477


>gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
 gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
          Length = 495

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 160/480 (33%), Gaps = 54/480 (11%)

Query: 7   FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             +L   +       I    +  +  +  D+R I+    F  IKG ++DGH   + A  K
Sbjct: 7   LEELKCTVTAGNSAEILDADKVEIKDVVNDNRKISEGSLFICIKGANFDGHSCAMEAANK 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
            A  +VV  D+    G   I V  V++   A+  ++ A       K   I ITG+ GKTT
Sbjct: 67  KAAAIVVEHDVELP-GDCKIAVIRVENTRYAMAFISAAYFDHPARKLKTIGITGTKGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------L 167
           T  ++   L +       IG+    IG     A       F + E              +
Sbjct: 126 TTYLIRNMLENAGHKVGLIGTIEVIIGEEHIHAENTTPESFALQEYMARMVEAGCDSVVM 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T      I + T I P H+        E+    K  +F+          
Sbjct: 186 EVSSQGLMLHRTQGFIFDIGIFTNIEPDHIGPNEHKDFEDYMHCKGLLFKQCR---IGIC 242

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + +            Y++G  +  D +        +   + V    + +  +H
Sbjct: 243 NGDDIHTDDILEGHTCKA----YTYGFGEGLDLRAINLAYIRKPGELGVFFDTEGLINMH 298

Query: 286 ---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G     N L  + +   L    +    AL     K     R         FTL+
Sbjct: 299 AEIRTPGKFSVYNALCAIAVAQELGCTPEEIAPALKDAKVKG----RIEMVKVSDEFTLM 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  N  ++K+ ++ L    P+   R I+V G     G  S+    ++ EV   Y+  
Sbjct: 355 ID-YAHNAMALKSLLTTLRDYHPN---RLISVFGC---GGNRSKLRRFEMGEVSGKYSDF 407

Query: 403 HVWLSG-------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S          ++   +   +     Y +         +       GD++V+  K 
Sbjct: 408 TIITSDNPRYEEPEDIMNDIETGMKKTDGKYIKITDRKEAIRYAIDHGEQGDIIVLAGKG 467


>gi|86148541|ref|ZP_01066828.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
 gi|85833687|gb|EAQ51858.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
          Length = 486

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/394 (16%), Positives = 139/394 (35%), Gaps = 40/394 (10%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+    ++L  L +             IA+ G+ GKTTT  ++T   S            
Sbjct: 107 PIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEADLD---PTFV 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
           N  +                I E   S    +      ++P ++++T I   H+  +   
Sbjct: 155 NGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGD 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +     +    L   G   +  DD     L  +      + + ++G S++AD ++  
Sbjct: 210 FETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPQVS----RQVITYGFSEDADIRIEN 265

Query: 263 WKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + Q  +Q    V  +GK ++++  +  G H A N    + + +      +  +KA++   
Sbjct: 266 YVQEGQQGKFTVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTE 325

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R              ++ + Y  +P  +   I          + R + +       
Sbjct: 326 GTGRRFDHLGEYETGKGVAMLVDDYGHHPTEVDVTIQAARS--GWTDKRLVMIF--QPHR 381

Query: 382 GELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETM 430
              ++  + D A VL   ++     V+ +G   +A  D   L R+I         +   +
Sbjct: 382 YSRTRDLYDDFANVLEQVDVLILLDVYSAGEKPIAGADGRSLSRTIRGRGKIDPIFVADI 441

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L   + + +  GD+V+ + +   G  R+  LL
Sbjct: 442 NALPSALANVIQGGDLVLTQGAGDVG--RVAKLL 473


>gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 478

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 158/462 (34%), Gaps = 52/462 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V GI  DSR + P + F  +   H DG  F+  A+  GA   ++    +   
Sbjct: 14  LEGAGAVRVCGIESDSRRVRPGQLFVGLHSRHGDGARFLAQALAAGAAAALLQGPELRRD 73

Query: 79  GSLSIPVFGVDDVLGALN-KLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT 136
                PV+   +    L   L      + +A  +I +TG+ GK++   ++     +  + 
Sbjct: 74  TVDGQPVWVHPEAPRLLGEALRRWYHWQGRAPGLIGVTGTNGKSSVTWLIAQLAGA--EV 131

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE-----------------LGMSHLGEIRFLT 179
              +G        PLT  +   +      E                 + +S         
Sbjct: 132 IGTLG------AGPLTALQPLANTTPAAVELWSLLGAARQRRAQWLAMEVSSHALALERV 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V    AV T ++  HL     +    +AKA++F          LN DD F   L  ++
Sbjct: 186 AGVPFTAAVFTNLSRDHLDFHGSMAAYGAAKAKLFTN-PALQLAVLNADDPFSAEL--RT 242

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           H      I  +G     D+++R++   +  + + +     +  +    +G   A+N L  
Sbjct: 243 HLHPDVRIVGYGFGAG-DYRVREYHPGARATLLVIDTPAGTRPLRIPLMGMANARNFLAA 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L  DVD   + L+      GR +R      Q    L+D  Y   P +++  +  
Sbjct: 302 LAAVEGLGMDVDP--QVLAALRLPPGRYQRLSPRTPQQPDVLVD--YAHTPDALRQVLED 357

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L  ++   +GR   V G     G+  +    ++  V +      V L+  +  +      
Sbjct: 358 LRTVA---KGRITVVFGC---GGDRDRGKRPEMGAVAAAL-ADRVLLTDDNPRSEDPAAI 410

Query: 414 LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + + L    +                      GD V++  K 
Sbjct: 411 VAEILAGMPAGRAEVCHDRAAAIARAIGEAEHGDWVLIAGKG 452


>gi|149186201|ref|ZP_01864515.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830232|gb|EDL48669.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
          Length = 469

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 148/415 (35%), Gaps = 52/415 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T +  +   +       IPV    ++L  L +L            IA+ G+ 
Sbjct: 67  GAAVVVTSTAVRRTNPEVAHALENRIPVVRRAEMLAELMRLRS---------TIAVAGTH 117

Query: 118 GKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  M+   L   +I  T       N  I           D D+ + E   S    +
Sbjct: 118 GKTTTTSMIASLLDCGAIDPTV-----INGGIIEQYGSNARLGDSDWMVVEADESDGSFL 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R     +   IAV+T I P HL ++   + +  A  E    +   G   L  D    + +
Sbjct: 173 R-----LDGTIAVVTNIDPEHLDHYGDFDGVKDAFVEFIHNVPFYGAAVLCIDHPEVQAV 227

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIG 289
             K      + + ++G +  AD      +     +  +V ++ +  E            G
Sbjct: 228 IGKVR---DRRVVTYGFNLQADICGVNVQPHEGGNRFDVIVRQRGEEDRRIENVCLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  QN L  + +   +    +      S F    G  +R+    +    T+ID+ Y  +
Sbjct: 285 RHNVQNALAAIAVSIEMGCPDEVICNGFSSFG---GVRRRFTNVGSVAGATVIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAE-----VLSLYNIS 402
           P  ++A +    + + +   R IAV+       + +L   F     E     +  +Y   
Sbjct: 341 PVEIRAVLEAAREATKN---RVIAVMQPHRYTRLHDLMDDFQSSFNEADQVYITPVYAAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G    AL + L    H      E  D L   + + + +GD+VV   +   
Sbjct: 398 EDPIEGVSAEALVEGLKSRGHRNAATVEDRDDLAKKLATDVEEGDLVVCLGAGDI 452


>gi|159038978|ref|YP_001538231.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
 gi|189029031|sp|A8LX80|MURC_SALAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157917813|gb|ABV99240.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
          Length = 511

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 153/393 (38%), Gaps = 30/393 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A   +    +A+ G+ GKTTT  M+T+ L             +
Sbjct: 97  VEARRRGLRVLHRSEALAAAMTGRRTVAVAGTHGKTTTTSMVTMVLQQAG--------VD 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +   ++ +      G  E  +    E      + RP +++IT I   HL+ +  + 
Sbjct: 149 PSFVIGGEISEVGSGAHHGTGEYFVVEADESDRSFLIYRPFVSIITNIEADHLNTYGDLA 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            + +A A+     +  G +    DD+    L     A G + +Y++G S +AD +L +  
Sbjct: 209 NLEAAFADFARLTDPDGFVVTCADDAGSRRLAETLRAEG-RRVYTYGTSTDADLRLTEMA 267

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             +       ++ G+S+ E      G HM  N    +    +L   +D A  AL+ F   
Sbjct: 268 SSTRGIRYLAEVDGRSLGEFRLPVPGRHMGLNSASAVLAAYLLGLPLDAAEAALAAFPGV 327

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R   A N     L+ + Y  +P  +  A+  L +++   +GR I V      +  
Sbjct: 328 RRRFERKGVADN----VLVYDEYAYHPTPIALALRTLREVAG--DGRLIVVF-QPYRLY- 379

Query: 384 LSQSFHIDLAEVLSLY---------NISHVWLSGFHVLALKDALP-RSIHVHYSETMDGL 433
            ++    ++AE L++              +   G    AL +A+P  +    + ++ +  
Sbjct: 380 RTRDLQTEIAEALAIADELVLLEVFGPGELREPGEGSAALIEAVPLPADRKVFVDSWEAA 439

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            + +      GDVVV   +        +L++ L
Sbjct: 440 PVEVARRARPGDVVVTMGAPPSSLMGEQLLDAL 472


>gi|116750889|ref|YP_847576.1| UDP-N-acetylmuramate--alanine ligase [Syntrophobacter fumaroxidans
           MPOB]
 gi|166224744|sp|A0LNY9|MURC_SYNFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116699953|gb|ABK19141.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 469

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 157/436 (36%), Gaps = 53/436 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS-------IPVFGVDDVLGALNKLAVAARLR 105
           GH    H +  GA +VV+++ +               +PV    ++L  L +L       
Sbjct: 56  GHR-AEHVL--GADVVVLSSAISDDNPENRAAREMGKVPVIRRAEMLAELMRLKY----- 107

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                + + G+ GKTTT  M++  L+        +      IG  L        +  G F
Sbjct: 108 ----SVLVAGAHGKTTTTSMVSTVLARGGLDPTVV------IGGKLNAWGTNAKLGNGDF 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +  +   +  FL  L+ P IAV+T I   HL  +  +  I     +    +   G   L
Sbjct: 158 MVAEADESDGTFL--LLPPTIAVVTNIDLEHLDFYRDLAHIQETFLQFINKIPFYGQAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             +D   + +  +      K   ++G S  ADFQ R  +     S   V   G  + E+ 
Sbjct: 216 CLEDENIQSILPRVE----KRFTTYGFSSQADFQARDVRTSGLFSSYRVHSHGDELGEIE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L  D               G  +R++         +ID+
Sbjct: 272 IRIPGRHNVLNSLAAVAVARELDLDWANIQDG---LRDMTGVQRRFQIKGEAANVLVIDD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---------HIDLAEV 395
            Y  +P+ ++A +  L+   P  + RRI V          +++          H D+  V
Sbjct: 329 -YGHHPSEIRAVLQTLADCYP--DRRRIVVF--QPHRYTRTRALMEQFARCFYHSDVLLV 383

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             +Y  S   + G     L   +    H  +H+ ET++     +   +  GD V+   + 
Sbjct: 384 TEIYAASETPIPGVTGERLSQEIASHGHHDLHFCETVESALSRLVKLVKPGDAVITLGAG 443

Query: 454 SCGFYRLINLLLEEFP 469
           +   +++   LL +  
Sbjct: 444 NI--WQVGEWLLAKLK 457


>gi|294635010|ref|ZP_06713527.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
 gi|291091609|gb|EFE24170.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
          Length = 476

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 149/422 (35%), Gaps = 51/422 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 76  AIAADNPEIIAAREARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMV 126

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +            N  +              + I E   S    +      ++P +
Sbjct: 127 ASIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 178

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   L  DD     L  +      +
Sbjct: 179 AIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLPRV----GR 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S++AD ++ +++Q   Q    +  Q +  + V  +  G H A N      +  
Sbjct: 235 HVTTYGFSEDADVRIEEYRQSGAQGGFFLCRQDRPRLAVTLNAPGRHNALNAAAAAAVAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D +  ++ALS F    G G+R+        +   NQ    ++ + Y  +P  + A 
Sbjct: 295 EEGIDDEAILRALSGFQ---GTGRRFDFLGEFSLQHVNNQPGQVMLVDDYGHHPTEVDAT 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLA 413
           I       P  + R + V          ++  + D A VLS  ++     V+ +G   + 
Sbjct: 352 IKAARAGWP--DRRLVMVF--QPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAGESPIP 407

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I                L   +   L DGD+++ + + + G  R+  +L 
Sbjct: 408 GADSRSLCRTIRGRGKLDPVLVSEPATLAQVLAQFLQDGDLILTQGAGNIG--RVARVLA 465

Query: 466 EE 467
           E 
Sbjct: 466 ER 467


>gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
 gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 163/437 (37%), Gaps = 50/437 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D    AL+ F+    R +RY       G    + 
Sbjct: 272 LNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +     DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCGF--YRLINLLLEE 467
            S G    +L+  + ++
Sbjct: 448 GSIGGVPAKLVQHIQQK 464


>gi|54310302|ref|YP_131322.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           SS9]
 gi|59798288|sp|Q6LMF7|MURC_PHOPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46914743|emb|CAG21520.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 487

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 161/449 (35%), Gaps = 49/449 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DS +    E FF     + +G   ++      +  +  +   + +   L IPV    +
Sbjct: 60  VTDSLTQKGAEIFFGHAAENVNGASVVVV-----STAIAQDNPELVAARELRIPVVRRAE 114

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIG 148
           +L  L +             IAI G+ GKTTT  ++T     + +  T+   G     + 
Sbjct: 115 MLAELMRYR---------HGIAIAGTHGKTTTTALMTQIYFEAGLDPTFVNGG----LVK 161

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIA 207
              T AR+     + I E   S    +      ++P ++V+T I   H+  +    E + 
Sbjct: 162 SAGTNARLGCS-RYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEVLK 215

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               +    L   G   +  DD     L  +      + I ++G S +AD ++ ++ Q +
Sbjct: 216 QTFIDFLHNLPFYGLAVMCVDDPVVRELLPRI----GRQIITYGFSDDADVRIVEYGQHA 271

Query: 268 EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            Q    +   GK  + V  +  G H A N    + + +    D D  I+AL  F     R
Sbjct: 272 HQGHFTILRAGKPDLNVKLNIPGKHNALNATAAVAVATEEGVDDDAIIRALLEFEGTGRR 331

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                         ++ + Y  +P+ +   I      +   + R + +          ++
Sbjct: 332 FDHLGEFETGNGSVMLVDDYGHHPSEVDVTIQAAR--AGWEKKRLVMIF--QPHRYSRTR 387

Query: 387 SFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFL 435
             + D A V         L +Y+   V + G    +L   +     +   +  T + L  
Sbjct: 388 DLYEDFAHVLEQVDVLLMLDVYSAGEVAIPGADGRSLCRTIRGRGKIDPIFVPTHEDLPS 447

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + + L + D+++ + +   G  ++   L
Sbjct: 448 VLANILQNDDLLLTQGAGDVG--KIARQL 474


>gi|332288551|ref|YP_004419403.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330431447|gb|AEC16506.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 480

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 149/424 (35%), Gaps = 48/424 (11%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV      +   V +     IPV     +L  + +             IA+ G+
Sbjct: 81  AGASVVVVSSAIKPDNPEVIAAREARIPVIQRAQMLAEIMRFR---------HGIAVAGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ +  +  K         N  +              + I E   S    + 
Sbjct: 132 HGKTTTTAMIAMIYAQAKLD---PTFVNGGLVKSAGTNAHLGLSRYLIAEADESDASFLH 188

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I P H+       EE+          L   G   L  DD   + L
Sbjct: 189 -----LQPMVAVVTNIEPDHMDTYHGNFEEMKQTYINFLHNLPFYGLAVLCADDPVLQTL 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQ 294
             K      + + ++G S  AD+++  + Q   Q    V    G+ ME++ +  G H A 
Sbjct: 244 LPKV----GRQVITYGFSDKADYRIEDYSQTGFQGHYTVICPDGQRMEILLNVPGKHNAL 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    L +      D ++ + AL+ F     R  +    +      ++ + Y  +P  + 
Sbjct: 300 NATAALAVAKEEGIDDESILAALADFQGAGRRFDQLGSFIRPNGKVMLIDDYGHHPTEVN 359

Query: 355 AAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             I                 PH   R   +  D  ++        +D+  +L +Y     
Sbjct: 360 VTIQAARHGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-----VDVLIMLDVYPAGEA 414

Query: 405 WLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++G    +L  ++     +   +    + L   +   L DGD+++ + + S    +L  
Sbjct: 415 PIAGADSRSLCRSIRNLGKIDPIFLADPEQLPEIMDQVLQDGDLILAQGAGSV--SKLSR 472

Query: 463 LLLE 466
            L+E
Sbjct: 473 RLVE 476


>gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
 gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
          Length = 508

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 96/495 (19%), Positives = 173/495 (34%), Gaps = 67/495 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++++    +       + G+  DSR + P   FFA+KG   DG+ FI  AV+ G
Sbjct: 1   MRLSQLVKSVAVLDMVGDVDPDITGLFYDSRKVQPGGLFFALKGVASDGYAFIEVAVKAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  VV+  D   +     I    V D   A  L   A  A   +   ++ ITG+ GKTTT
Sbjct: 61  AVAVVIEDDRTPAD----IAWVRVADGRLAMSLMAAAFYANPAAGLPVVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167
             +L           A +G+ N                 + +  TL ++      GI   
Sbjct: 117 TFLLESIFEKGGLPAAVLGTVNYRFGDLSIPAPNTTPESVDLQQTLRKLVDAGAKGIVME 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTG 221
             SH  + R +      ++ V T +   HL     +E    +K  +F  L      +   
Sbjct: 177 VSSHALQQRRI-DGCSFNVGVFTNLTRDHLDYHLDMESYLQSKTRLFSELLVPDEKKPER 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD +   +   +       + ++G  K+AD      +         +      +
Sbjct: 236 HAVINTDDEYGRRIAQAAAC----PVVTYGIEKSADINAENVEFSVSGISCTLATPKGRI 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    +G     N++   G    L   +++  + L       GR +R   AL  G   L
Sbjct: 292 ELRSMLVGRFNLYNIMAAAGAGVALGLPLESIKEGLEHHGQVPGRLERVENAL--GVTVL 349

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y     +++   +VL  ++   +GR I + G     G+  +     + E+   Y+ 
Sbjct: 350 VD--YAHTGDALE---NVLLTMTELKKGRIITLFGC---GGDRDKGKRPIMGEIAGRYSD 401

Query: 402 SHVWLSG--------FHVLALKDALPRSIHVHYS---------------ETMDGLFLFIQ 438
             +  S           +  +++ + R     YS               E          
Sbjct: 402 LSIITSDNPRTENPAEIMAQVREGIVRLGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAV 461

Query: 439 SSLVDGDVVVV--KS 451
            +   GD+V++  K 
Sbjct: 462 KAARPGDIVLLAGKG 476


>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
 gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
          Length = 514

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 163/479 (34%), Gaps = 61/479 (12%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP   ++ + +DSR +A  + F A+ G   DG  +I  A+ +GA  V+      ++   
Sbjct: 21  DVPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQGQSAPSI 80

Query: 81  LS-----------------IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTT 121
            +                 +P+  ++ +   L+KL      +  ++  ++ +TG+ GKTT
Sbjct: 81  PTQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQFYHQPGARLKLVGVTGTNGKTT 140

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH----------------IGVPLTLAR-MPVDVDFGI 164
             ++L     ++    A +G+  N                 I V  TL   +    +F  
Sbjct: 141 LTQLLAQWSQALGNISAVMGTLGNGLLQQSLIATENTTGSAIDVQKTLNHFVMQGANFAA 200

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+     G ++     +    AV T ++  HL     +    +AK ++F          
Sbjct: 201 MEVSSH--GLVQHRVTALPFTAAVFTNLSRDHLDYHGDMARYEAAKWQLFS-THHAKEKI 257

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-----KWKQCSEQSWMEVQLQGK 279
           +N DD          H L      S      AD++ R          ++   +       
Sbjct: 258 INADDQVGRRWL---HQLPHAVAVSMEGKIPADWKGRWLETKNINYHAQGVTLRFDSSWG 314

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +V   +G     N+LM L  +  L   +   +  +S      G   R          
Sbjct: 315 EGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATVSQLQAVCG---RMEVFNALDRP 371

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE----- 394
           T+I + Y   P +++ A   L+    H +G+   V G   +  +  ++    +AE     
Sbjct: 372 TVIVD-YAHTPDALEKA---LAAARLHCKGQLWCVFGCGGDRDKGKRALMGGIAEQWADH 427

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++   +       G  V  +   L    H             +     + DVVVV  K 
Sbjct: 428 LVVTDDNPRTEDPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAKEQDVVVVAGKG 486


>gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 498

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 150/403 (37%), Gaps = 29/403 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+  +N + +DSR + P++ F A+KG   DGH+FI  A+ K    V+        
Sbjct: 13  WIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAVLSEVSERKQ 72

Query: 78  IGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            G ++            L+K           +  S+  +I ITG+ GKTT  +++     
Sbjct: 73  HGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTVTQLINQWSE 132

Query: 132 SIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELG-----------MSHLGEIRFL 178
            +    A +G+  N     L  T       +D   F              +S  G ++  
Sbjct: 133 LLGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSVTIEVSSHGLVQNR 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +  + A+ T +   HL     +++   AK  +F        I LN +D + +    K
Sbjct: 193 VKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTDHTVNK-IILNANDKYAQNWLKK 251

Query: 239 --SHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +      TI    + K +         K   E++ ++ +       +  + IG    +
Sbjct: 252 FSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSWGHGILSTYLIGTFNIK 311

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  +   +   +K      P  GR + +     +    +    Y   P +++
Sbjct: 312 NLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPICII---DYAHTPDALE 368

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +++ +     + + +   + G   E  +  +    ++AE ++
Sbjct: 369 KSLNAIK--IQYCKKKIWCIFGCGGERDKKKRPLMGEIAEKIA 409


>gi|126665245|ref|ZP_01736228.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
 gi|126630615|gb|EBA01230.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
          Length = 486

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 144/403 (35%), Gaps = 44/403 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   V +  S  IP+    ++L  + +             IA+ G+ GKTTT  ++    
Sbjct: 91  NNPEVVAARSNRIPIVPRAEMLAEIMRYR---------HGIAVAGTHGKTTTTSLIASVF 141

Query: 131 SSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +      T+   G  N+      T A++     + I E   S    +        P I+V
Sbjct: 142 AEAGLDPTFVIGGKLNS----AGTNAKL-GGSRYLIAEADESDASFLHLT-----PLISV 191

Query: 189 ITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +T I   H+  +   +E++     +    L   G   +  DD +   +  +      +TI
Sbjct: 192 VTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCIDDPYVREILPRIS----RTI 247

Query: 248 YSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++G     AD++         ++   V+  G    ++V     G H   N L  + + +
Sbjct: 248 ITYGIDNPEADYRAENIVSDGLRTRFLVKRPGPRADLQVELKMPGRHNVLNALAVIAVAT 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D  +  + L+ F     R + Y           + + Y  +P  + A I       
Sbjct: 308 DDGVDDASIGRGLAGFAGVGRRFQVYGDYPIAKGSITLVDDYGHHPTEVAAVIRAARDAW 367

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALK 415
           P   GRR+ +L         ++  + D  +VLS          Y+     + G    AL 
Sbjct: 368 P---GRRVVMLYQPHRF-SRTRDLYEDFVKVLSTVDGLLLMDVYSAGEAAIPGCDGRALC 423

Query: 416 DALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +L +   V   + E    +   + S L DGD+++ + +   G
Sbjct: 424 RSLRQRGKVEPVFVEHNKDIETLLASVLRDGDLLITQGAGDIG 466


>gi|269137996|ref|YP_003294696.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983656|gb|ACY83485.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
          Length = 491

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 152/421 (36%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 91  AIAADNPEIIAAREARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 142 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 193

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   L  DD     L  +      +
Sbjct: 194 AIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLPRV----GR 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S++AD ++ +++QC  Q    +  Q +  + V  +  G H A N      + S
Sbjct: 250 QVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNAPGRHNALNAAAAAAVAS 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D +  ++AL  F    G G+R+        +   N+    ++ + Y  +P  + A 
Sbjct: 310 EEGIDDEAILRALGGFQ---GTGRRFDFLGEFSLQHVNNKPGKVMLVDDYGHHPTEVDAT 366

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLA 413
           I       P  + R + V          ++  + D A VLS  ++     V+ +G H + 
Sbjct: 367 IKAARAGWP--DRRLVMVF--QPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAGEHPIP 422

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I                L   +   L +GD+++ + + + G  R+  +L 
Sbjct: 423 GADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLILTQGAGNIG--RVARVLA 480

Query: 466 E 466
           E
Sbjct: 481 E 481


>gi|330957969|gb|EGH58229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 486

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 147/392 (37%), Gaps = 42/392 (10%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTY 137
              IPV    ++L  L +             IA+ G+ GKTTT  ++    ++     T+
Sbjct: 97  ERRIPVVPRAEMLAELMRYR---------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTF 147

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G  N       T A++     + I E   S    +      ++P +AV+T I   H+
Sbjct: 148 VIGGRLN----AAGTNAQLGTS-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHM 197

Query: 198 SNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           + +     ++     E    L   G   +  DD     +      L  +   ++G S+ A
Sbjct: 198 ATYEGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREIL----PLVKRPTMTYGFSEEA 253

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D +    +Q    ++  V  + +  ++V  +  G H   N L T+ I +      +  +K
Sbjct: 254 DVRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVK 313

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            LS F     R + Y     +G   ++ + Y  +P  + A I+ +    P  + R + V 
Sbjct: 314 GLSGFQGVGRRFQIYGELPVEGGNVMLVDDYGHHPREVAAVINAVRGGWP--DRRLVMVY 371

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH----- 425
                    ++  + D  +VL+  N+     V+ +G   +   D+  L  SI        
Sbjct: 372 --QPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDP 429

Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            Y E    L   ++  L  GD+++ + +   G
Sbjct: 430 IYIERGVELAPLVKPLLRAGDILLCQGAGDIG 461


>gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
 gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
          Length = 504

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 165/479 (34%), Gaps = 53/479 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +         G      V+GIS+ S+ I P + + A+ G    G +F   A+  GA 
Sbjct: 16  LATVAAWAGAELRGNPAGLEVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGAV 75

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            V  +       G    P   VD     L +L+        +   ++ +TG+ GKTTT  
Sbjct: 76  AVFTDEAGADR-GPAGAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTR 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELG 168
           +L   L       A +G+    I      + +                  DV     E+ 
Sbjct: 135 LLEAGLQQAGVPAAVVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVS 194

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     V   +AV   +   HL     +E+  +AKA +F   E+     +N D
Sbjct: 195 SHALVMGR--VDGVVFDVAVFLNLGRDHLDFHRDLEDYYAAKASLFTP-ERARFALVNVD 251

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQ-GKSME 282
           D+    L  ++       + +F   +      AD++    +  +  S   V    G+ + 
Sbjct: 252 DAHGRRLAEEATV----PVRTFSMGRGDDAQRADWRAVDVRLRATGSEFVVVAPDGRRIP 307

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G     N L  +   +    D       ++      GR +R     + G   L+
Sbjct: 308 AGCALPGDFNVANTLAAVAAAAEAGLDPAVVAAGIAAAGGVPGRLERV----DAGQDFLV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++AAI  L    P  EGR I VLG   +     +     +A  L+     
Sbjct: 364 VVDYAHKPDAVEAAIRTLR---PLTEGRVIVVLGAGGDRDPGKRPIMAGIAARLA----D 416

Query: 403 HVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVV--KS 451
            + ++          A++ A+   +    +  + G    I+ +L     GD+V++  K 
Sbjct: 417 LLVVTDDNPRTEDPAAIRAAMLAGVVTGQAIEVGGRRAAIREALRRAGPGDIVLIAGKG 475


>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 555

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 158/476 (33%), Gaps = 59/476 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V GI+ DSR + P + + A+ G    G DF   A + GA  V+ + D      +  +
Sbjct: 41  EVHVRGITHDSRQVGPGDLYAALPGTRAHGADFAGQAAEAGAAAVLTDGDGAERAAATGL 100

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V DV   L   A            +I  TG+ GKTT   ++   L         +G
Sbjct: 101 PVIVVPDVRAVLGTAASWVFKDPAQDLLLIGTTGTSGKTTVTYLVESGLRHAGMRTGLVG 160

Query: 142 SYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +G    ++ +                   V     E+    L   R      R  
Sbjct: 161 TVEMRVGDERVVSSLTTPEATDLHGLFALMRERGVSAAAMEVSSHALALSR--VGGTRYD 218

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T ++  HL   S + +   AKA +F   E      +N DD F   L     A G  
Sbjct: 219 VAVFTNLSQDHLDFHSDLRDYFDAKARLFTP-EYCDIAVVNADDRFGRALVDMVQADGRV 277

Query: 246 TIYSFGKSK----------NADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQ 294
            + +F               AD++    +  +  S   +   G           G     
Sbjct: 278 PVTTFAVDGYTDADPATAMEADWRAVDVRLGAMGSAFRIVGPGGMEANASVALPGPFNVS 337

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANP 350
           N +  +  +      ++TAI  ++      GR +           Q F  L+D  Y+  P
Sbjct: 338 NAMAAIVGLVEAGLPLETAIAGVAAAPGVPGRMEPVVANAVPHAFQDFTALVD--YSHKP 395

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++A ++ L   +   EG    V+G     G+  ++    + E  +  +   V  +   
Sbjct: 396 GAIEAVLTALRATT---EGGLTMVVGC---GGDRDRAKRPLMGEAAARLSDQLVITNDNP 449

Query: 409 --FHVLALKDALPRSI---------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +++  ++   +          V                   GDVVVV  K 
Sbjct: 450 RTEDPVSIAASMLEGVAKVPEEHRARVTVEFDRAEAIRLAVERARPGDVVVVAGKG 505


>gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
 gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 94/469 (20%), Positives = 160/469 (34%), Gaps = 56/469 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D L+ +    +    +  V+ +S DSR     + F  + G   D H FI    + G
Sbjct: 1   MVLSDWLEGLDYELLQGSLEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFIPQVEEAG 60

Query: 65  AGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120
             ++V+    + +    S  + V  V D   AL  L+ A        +I   +TG+ GKT
Sbjct: 61  VRVIVIERPLEELLKAVSPQVTVLRVKDGRRALALLSAARFGYPARKMITVGVTGTKGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-----------LARMPVDVDFGIFE--- 166
           TT  M+   L +  K    IG+    IG  +T           L +   D+     E   
Sbjct: 121 TTTHMIKAILEAAGKKVGMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADMVEAGCEYMI 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIF 224
           + +S  G     T  +     + T I+P H+     +   E    K+ +   +       
Sbjct: 181 MEVSSQGIKMHRTDGLFFDYGLFTNISPDHIGPDEHADFGEYLYYKSRL---MTMCKVGL 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKS 280
           +N  D  +E +   +         + G   +ADF+ R  +  +E     +  +V     S
Sbjct: 238 VNRGDEHYEGIIKDASCRLYTYCVAEGDGASADFEARNIRYVAEENFVGTEFDV-TGWLS 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M+V     G     N L  + + S +  D      AL           R          T
Sbjct: 297 MDVRLGIPGLFNVDNALAAMSLCSFMGLDKQRMSHALEHIRING----RMEIVHTSKRCT 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y  N  SM++ +  L    P    R + V G     G  S+     + E+     
Sbjct: 353 VLVD-YAHNAVSMESLLGTLRNYHPK---RLVCVFGC---GGNRSKDRRYSMGEI----- 400

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--GDVV 447
                  G  +  L      +      E  + +   I+SS+    GD V
Sbjct: 401 -------GGRMADLCILTADNSR---YEKPEDIIADIRSSIEKTGGDFV 439


>gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
 gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
          Length = 498

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 95/457 (20%), Positives = 161/457 (35%), Gaps = 48/457 (10%)

Query: 28  NGISIDSRSIA-PQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSI-P 84
           +G+  D R +  P++ F A+ G  +D  +     + ++  GLV+V+ D   +  S S+ P
Sbjct: 26  SGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLTEQRCGLVLVDYDDQRAYQSASVLP 85

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  +  +L  L             TIIA+TG+ GKTT    L  +L+ + K  A IG+  
Sbjct: 86  VLHLKTMLADLA-FGYYETPSDAMTIIAVTGTNGKTTVTRWLAQSLNQLGKKAAVIGTLG 144

Query: 145 NHIGVPL---TLARMP--VDVDFGIFEL----------GMSHLGEIRFLTHLVRPHIAVI 189
                 L   T    P  V V   + EL            S +G  +     V   +A+ 
Sbjct: 145 YGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDTVCIEASSIGLEQRRLACVSIDVALF 204

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +     +K  I           +N DDSF     A      I    +
Sbjct: 205 TNLSQDHLDYHGDMAAYGRSK-MILASWPTLRLAVVNADDSFGVEFLAHVQHRNI-DCSA 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G    AD Q+       +   +E+++ G   ++    IG   A NM +    +  L  D
Sbjct: 263 VGHVSTADCQIVSVAHQEKGQRIELKINGAITQIDTPIIGEFNADNMALVFATLVRLGYD 322

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                +AL+   P  GR +             +   Y   P +++  +  L   +    G
Sbjct: 323 ASEVKRALAGVTPAPGRMQHIE------GEPAVVVDYAHTPDALEKTLLALRPFANKRMG 376

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------------VLALKD 416
           +   V G     G+  +S    +    ++     V L+  +             +  +  
Sbjct: 377 KLWVVFGC---GGDRDRSKRPLMG-AAAVAKADFVVLTSDNPRSEKPETILQEIIAGIDA 432

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L  +IHV           F        DVV++  K 
Sbjct: 433 PLQNNIHVEV--DRPVAIEFAVRKANAQDVVLLAGKG 467


>gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans
           CH34]
 gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans
           CH34]
          Length = 471

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 103/440 (23%), Positives = 165/440 (37%), Gaps = 56/440 (12%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALN 96
            A  G     GHD   +    GA  VVV+T +      +       IPV     +L  L 
Sbjct: 46  LASLGARVAHGHD-AENVT--GANAVVVSTAVTNDNPEVLAARARRIPVVPRAVMLAELM 102

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L            +AI G+ GKTTT  ++   L+               IG  L  A  
Sbjct: 103 RLKQG---------VAIAGTHGKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGA 147

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
              +  G F +  +   +  FL   + P + VIT I   H+  +      +  A  E  +
Sbjct: 148 NARLGTGDFIVAEADESDASFLN--LFPVMEVITNIDADHMDTYGHDFARLKQAFVEFTQ 205

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV- 274
            L   G   L  DD     +         K +  +G +++A  +    +    Q    V 
Sbjct: 206 RLPFYGIAVLCVDDPNVREIL----PFVSKPVVRYGFAEDAQIRAVNARAVDGQMHFTVL 261

Query: 275 -QLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            QL G +   +++V +  G H  QN L  + I + L     + +KAL  FH    R +RY
Sbjct: 262 RQLNGHAEPPLDIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHGVGRRFQRY 321

Query: 331 ---RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                    G FTL+D+ Y  +P  M A ++      P     R  VL         ++ 
Sbjct: 322 GEVATPDGSGTFTLVDD-YGHHPVEMAATLAAARGAFPD----RRLVLAFQPHRFTRTRD 376

Query: 388 FHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLF 436
              D  +VL   +    + V+ +G   +   D  AL R++ V       + E ++ +   
Sbjct: 377 CFEDFVKVLGTVDALLLAEVYAAGESPIVAADGRALTRALRVANKVEPVFVEQIEDMPQA 436

Query: 437 IQSSLVDGDVVVVKSSNSCG 456
           I +++  GDVVV   + S G
Sbjct: 437 ILNAVRPGDVVVTMGAGSIG 456


>gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12]
 gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12]
          Length = 477

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 133/398 (33%), Gaps = 45/398 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  ++   LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFR---------HGIAVAGTHGKTTTTSLIAAVLSEGG- 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                      +      A++     + + E   S    +R     + P +AV+T I   
Sbjct: 142 -LDPTFVIGGQLLAAGANAKLGAG-QWLVVEADESDGSFLR-----LNPLVAVVTNIDAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL N+      I  A  E  + L   G   L  DD     L  K+     + + ++G   
Sbjct: 195 HLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELAGKAR----RHVMTYGIDA 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD +     Q   + +  + L  GK + V     G H   N L    +   L    +  
Sbjct: 251 AADVRAEDVVQDGARMYFTLCLPEGKVIPVTLALPGRHNVLNALAASAVGWQLGVPPEVI 310

Query: 314 IKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +AL  F    G G+R+      A+  G    + + Y  +P  ++A   V +        
Sbjct: 311 GRALKSFV---GIGRRFNDLGDVAIGNGACVRLIDDYGHHPRELEA---VFAAARGGWPD 364

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPR 420
           +R+ V             F    A VLS         +Y    V + G    AL  A+  
Sbjct: 365 KRLVVAFQPHRYSRTRDQF-DAFAAVLSSVDALVLSEVYPAGEVPIPGADAKALARAIRA 423

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                      +  L   +   L +GD++++  +   G
Sbjct: 424 RGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGAGDIG 461


>gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia J2315]
 gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Burkholderia cenocepacia J2315]
          Length = 512

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 158/473 (33%), Gaps = 44/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   F+  AV +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLQAGDVFVAYAVDGADNRAFMADAVARGAAA 68

Query: 68  VVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   D +    ++ +   V  +D + G +               + +TG+ GKT+  + 
Sbjct: 69  VLYQPDGLTDAPAVPVALAVPALDQLAGEIASGW-YGDPSDSLLAVGVTGTNGKTSCTQW 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++ +  A IG+    +   L               +LA++       +  E+  
Sbjct: 128 IATALTALHQPCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVAMEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     IAV T +   HL      +   +AKA++F          LN DD
Sbjct: 188 HALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVLNRDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +    L  K         Y  G +   D          +  +  +   ++      +V  
Sbjct: 245 AAGRRLLEKLAGRVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDADVEV 304

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  LG +       D A+  +       GR +R      Q    L+   
Sbjct: 305 GTLGTFNVSNLLAVLGSLLAADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVID 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   +  L  I+    GR + + G   +     +     +AE L+      V 
Sbjct: 364 YAHTPDALDKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DEVV 419

Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           ++  +  +         +   +         E     +   ++ +  +  VV+
Sbjct: 420 VTSDNPRSEDPQHIIDQVIAGMTAPERARRIEDRASAILQAVRGAAREDVVVL 472


>gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
 gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
          Length = 511

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 142/417 (34%), Gaps = 49/417 (11%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +G   Q  +  +S DSR + P   F   KG  +   DF+  A ++GA   +      
Sbjct: 26  GERLGESLQREITLVSCDSRKVIPGTLFIC-KGAGF-REDFLRMAKERGAAFYLSEKPY- 82

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIAL--- 130
                + +P  GV D+  A+   A     R      ++ ITG+ GK+TT   L       
Sbjct: 83  ---EGVDLPWIGVSDIRAAMAHSASFCYDRPWEAFRLVGITGTKGKSTTAFFLKAIFDVY 139

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHL 172
             S   +    I +     G     +RM                   +D+   E+    L
Sbjct: 140 EKSRGGRPSGLISTILTEDGKESRPSRMTTPEPIELEEHFANAREAGLDYVTMEVSSQAL 199

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              R L   V+  +A    I   H+S       E+  ++K  IF       T  ++    
Sbjct: 200 KYDRVLD--VQFDVAAFLNIGYDHISPIEHPTWEDYFASKLRIFSQCR---TAVVHLGVD 254

Query: 231 FFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             E + A +     + + +F +  + AD      K+   ++  + ++ G+  E +    G
Sbjct: 255 HSEEMLAAAQKA--RKVITFSETDERADVYGYGMKKQGRETHFKARVLGQEREYILGIPG 312

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           +    N L  + +        D   +           G+        G    I + Y  N
Sbjct: 313 FFNVSNALAAIAVAEHYGIPYDCVKEG---LKRARVPGRMEEYTSADGKIVTIID-YAHN 368

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             S +   +   +      GRRI  L      G  + +   DL EV +  N  +++L
Sbjct: 369 RLSFEKLFAAAKE---EFPGRRIVAL--FGASGGKAINRRRDLGEVAA-ANADYIYL 419


>gi|330828046|ref|YP_004390998.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
 gi|328803182|gb|AEB48381.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
          Length = 484

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 161/425 (37%), Gaps = 46/425 (10%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
            H F+ H+ +   GA +VVV+T +      L       IPV    ++L  L +       
Sbjct: 65  AHIFVGHSAEHVEGASVVVVSTAIKQDNPELLAARELRIPVVRRAEMLAELMRFR----- 119

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IAI G+ GKTTT  ++    +   +           +    T AR+     + I
Sbjct: 120 ----HGIAIAGTHGKTTTTSLVASIYAEADRDP--TFVIGGLLNSAGTNARLGSS-RYLI 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      ++P ++++T I   H+  +     ++ +   E    L   G  
Sbjct: 173 AEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFSKLKATFIEFLHNLPFYGLA 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSME 282
            +  DD     +  +      +   ++G S +AD Q+  + Q +  S   V+  +   + 
Sbjct: 228 VVCIDDPVIRGMLPEIA----RPTLTYGLSDDADVQVLDFVQTTNHSCFRVRRKEAGELL 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H A N    + + +      +  I AL+ F     R ++Y          ++
Sbjct: 284 VTLNLPGIHNALNAAAAIAVATEDGVSDEAIISALAKFEGVGRRFQQYGEFETGRGKAML 343

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y  +P+ +K  I+      P    R + V          ++  + D A+VLS  ++ 
Sbjct: 344 VDDYGHHPSEVKVTINAARAGWPEK--RLVMVF--QPHRYTRTRDLYEDFADVLSKVDVL 399

Query: 402 --SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
               V+ +G   +   D  AL RSI         +  T D +   +   + +GD+V+ + 
Sbjct: 400 VMLEVYAAGEEPIPGADGRALCRSIRSRGNLEPIFVATPDDVPAVLADLIGEGDLVLTQG 459

Query: 452 SNSCG 456
           + + G
Sbjct: 460 AGNVG 464


>gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
 gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
          Length = 492

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 155/456 (33%), Gaps = 46/456 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G +ID+R +AP   F A +G   +G DFI  A+        V     A+      
Sbjct: 19  EINVTGFAIDNRKVAPGTVFGAFQGAQVNGEDFIPAAI----EAGAVAVVARAAAKVEGA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                D       +LA      +   I+A+TG+ GKT+  EM         +  A IG+ 
Sbjct: 75  LHIASDIPRKCFAELAAGFFTPAPEHIVAVTGTNGKTSCVEMTRQIWRMSGERAASIGTL 134

Query: 144 NNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                       +                   V    +E     L + R     V    A
Sbjct: 135 GVTTPDESVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRN--EGVAVEAA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLN---YDDSFFELLKAKSHALG 243
             T  +  HL   + +E+  +AK  +F+ +   G T  +     +  +   +   +   G
Sbjct: 193 GFTNFSRDHLDYHADMEDYFAAKMRLFDEVVSDGATAVIWMGAGESGWNARVVDHAKQRG 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T+ + G+    D +L   +       + V+  G    +    IG +   N L++ G+ 
Sbjct: 253 L-TVMTVGEQGE-DIRLTHREPTQLGQSLTVEHAGTERTINLPLIGAYQVSNALVSGGLA 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D      A++   P  GR +R   A +     +    Y   P +++AAI+ L   
Sbjct: 311 LATGIDASRVWDAVARLQPVRGRLERAVIAPSGAPVYI---DYAHTPDALEAAIAALR-- 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA- 417
            PH  GR I V G     G+        + E  +  +   V ++     G     ++ A 
Sbjct: 366 -PHVTGRLITVFGA---GGDRDHGKRAPMGEAAAKAS-DLVIVTDDNPRGEDPADIRRAV 420

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L  +                 +     D+V++  K 
Sbjct: 421 LEGAGEAREVAGRREAIHAAIAEAGKDDIVLIAGKG 456


>gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           MC0-3]
 gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 163/437 (37%), Gaps = 50/437 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D    AL+ F+    R +RY       G    + 
Sbjct: 272 LNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +     DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCGF--YRLINLLLEE 467
            S G    +L+  + ++
Sbjct: 448 GSIGGVPAKLVQHIQQK 464


>gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
 gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
          Length = 471

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 167/458 (36%), Gaps = 55/458 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR  A  + F AIKG   DG  FI  A+ +G   V+ + +  A  G ++    +PV  
Sbjct: 3   LDSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIY 62

Query: 88  VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +  +   L+ LA     +   K  +I +TG+ GKTTT ++L      + +T A +G+  N
Sbjct: 63  LAQLSQRLSALAGRFYQQPGDKLRLIGVTGTNGKTTTTQLLAQWGQLLGETGAVMGTVGN 122

Query: 146 HIGVPLTLARMPV-------DVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAVITT 191
            +   L  A                + E       + +S  G ++     +    A  T 
Sbjct: 123 GLYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAAAFTN 182

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +    +AK  +F    + G I +N DD        K       T     
Sbjct: 183 LSRDHLDYHGDMARYEAAKWLLFSE-HQVGQIIVNADDEVGRRWLQKLPDAVAVT----- 236

Query: 252 KSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              N D        Q  +       + +         E+    +G     N+L+ LG + 
Sbjct: 237 MEDNIDPGCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLL 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D+ I   +   P  G   R       G  T++ + Y   P +++ A+       
Sbjct: 297 ALGYPLDSLIATGNQLQPVTG---RMEVFSAPGKPTVVVD-YAHTPDALEKALEA---AR 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDAL 418
            H  G+   V G   +  +  +     +AE  S      V ++  +  +      + D L
Sbjct: 350 LHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFS----DVVVITDDNPRSEDPAAIVADIL 405

Query: 419 PRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
              +    +  M G    + +++    +GD+V+V  K 
Sbjct: 406 SGLLDAGRARVMPGRAQAVTNTVMQAQEGDIVLVAGKG 443


>gi|117618995|ref|YP_858322.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|171460770|sp|A0KPX1|MURC_AERHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117560402|gb|ABK37350.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 484

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 163/425 (38%), Gaps = 46/425 (10%)

Query: 53  GHDFILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
            H F+ H+ +    A +VVV+T +      L       IPV    ++L  L +       
Sbjct: 65  AHIFVGHSAEHVNEASVVVVSTAIKQDNPELLAARELRIPVVRRAEMLAELMRFR----- 119

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IAI G+ GKTTT  ++    +   +           +    T AR+     + I
Sbjct: 120 ----HGIAIAGTHGKTTTTSLVASIYAEADRDP--TFVIGGLLNSAGTNARLGSS-RYLI 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      ++P ++++T I   H+  +     ++ +   +    L   G  
Sbjct: 173 AEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFSKLKATFIDFLHNLPFYGLA 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSME 282
            +  DD     +  +      +   ++G S +AD Q+  + Q S +S   V+ +    +E
Sbjct: 228 VVCVDDPVIRGMLPEIA----RPTITYGLSDDADVQVLDFVQTSNRSRFRVRRKDAGELE 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H A N    + + +      D  I+AL+ F     R ++Y          ++
Sbjct: 284 VTLNLPGIHNALNAAAAIAVATEDGIGDDAIIRALAKFEGVGRRFQQYGEFETGRGKAML 343

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y  +P+ +K  I+      P    R + V          ++  + D A+VLS  ++ 
Sbjct: 344 VDDYGHHPSEVKVTINAARAGWPEK--RLVMVF--QPHRYTRTRDLYEDFADVLSKVDVL 399

Query: 402 --SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
               V+ +G   +   D  AL RSI         +  T D +   +   + +GD+V+ + 
Sbjct: 400 VMLEVYAAGEEPIPGADGRALCRSIRSRGSLEPIFVATPDDVPAVLAGLVGEGDLVLTQG 459

Query: 452 SNSCG 456
           + + G
Sbjct: 460 AGNVG 464


>gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 476

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 94/494 (19%), Positives = 174/494 (35%), Gaps = 67/494 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +N L+T   +                +  GIS D+R +     F   +G  YDG  F+  
Sbjct: 6   LNELFTLLHI----------PCEDTRILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQE 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ KGA  VV+  + +        P   V+ +  AL +L     L ++  +I +TG+ GK
Sbjct: 56  ALDKGA--VVLCDEPLKQEHVYYTPY--VERIRQALLELY-YGDLCARLHVIGVTGTNGK 110

Query: 120 TTTKEMLTIALSSIKKTYACIGS-----------YNNHIGVPLTLAR-----MPVDVDFG 163
           T+   +++  L+        IG+            +N       LA      +   +   
Sbjct: 111 TSVASIISQLLAMEDCAVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITHV 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    + + R     ++    V T I   HL            K ++   L+  GTI
Sbjct: 171 VMEVSSHAIDQNRI--SFLQFDDIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGTI 228

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N D S+ + L      L   T  S G  + A F L + +  +        LQG +   
Sbjct: 229 IYNSDLSYMQELV----NLAQHTCISIGM-QAAHFPLSEVQLSAHDLSF--HLQGYAFHA 281

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + +V       +  ++      P  GR +        G FT+  
Sbjct: 282 RL--LGMVNVYNLAEAIVVVHRTGCSYERLVQDCEQLKPVSGRMEVMEV----GGFTIWI 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y    +++K  +   + +    +GR + +LG     GE  ++    +A + + Y+   
Sbjct: 336 D-YAHTASAVKELLLFANSVK---KGRILTILGC---GGERDRTKRPQMAAIAAAYSDIA 388

Query: 404 VWLSG-FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSC 455
           V+ S      ++ D L         +    E              + D++++  K S   
Sbjct: 389 VFTSDNPRGESVADILQDMKCESFSNAVVFENRYFAIKHTIKVAQNSDIIIIAGKGS--- 445

Query: 456 GFYRLINLLLEEFP 469
                I     E+P
Sbjct: 446 --EETITAFGREYP 457


>gi|304558043|gb|ADM40707.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda FL6-60]
          Length = 487

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 152/421 (36%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 87  AIAADNPEIIAAREARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   L  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S++AD ++ +++QC  Q    +  Q +  + V  +  G H A N      + S
Sbjct: 246 QVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNAPGRHNALNAAAAAAVAS 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D +  ++AL  F    G G+R+        +   N+    ++ + Y  +P  + A 
Sbjct: 306 EEGIDDEAILRALGGFQ---GTGRRFDFLGEFSLQHVNNKPGKVMLVDDYGHHPTEVDAT 362

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLA 413
           I       P  + R + V          ++  + D A VLS  ++     V+ +G H + 
Sbjct: 363 IKAARAGWP--DRRLVMVF--QPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAGEHPIP 418

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I                L   +   L +GD+++ + + + G  R+  +L 
Sbjct: 419 GADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLILTQGAGNIG--RVARVLA 476

Query: 466 E 466
           E
Sbjct: 477 E 477


>gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 507

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/500 (16%), Positives = 157/500 (31%), Gaps = 74/500 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I            +  I++ S+ +     F  IKG   DGH +I  A ++G
Sbjct: 1   MILKALFERIPAVLCQGSWDTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYIQEAAERG 60

Query: 65  AGLVVVNTDMVASIGSLS---------------------IPVFGVDDVLG--ALNKLAVA 101
           A   +V         S+                      + +  V +     A    A  
Sbjct: 61  AAACLVEEAFWKKSASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAAWAAAAFY 120

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--------------- 146
                +  +I ITG+ GKT+T  M+   L +       +G+ +                 
Sbjct: 121 RYPSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRAERTTPEA 180

Query: 147 IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGI 203
           I +   L +M      F + E+    L   R  +  +   + V T +   H+       +
Sbjct: 181 IDIQRYLRKMADSGCRFAVMEVSSQGLKLHR--SDSILFDVGVFTNLGRDHIGPKEHKDM 238

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            E A  K+ +F+   K      N DD ++  +   +       + ++   + AD Q    
Sbjct: 239 AEYAHYKSLLFQ---KCCFGIGNIDDPYYREIFKDASC----QVCTYSCRQKADVQASDI 291

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              +    +    +    E      G     N +  + +      D +   KA       
Sbjct: 292 MLVNRNGQLGTFFKVNGEEYAVSAPGEFSVYNAVAAITVCRHYGIDQEIIRKA---LKTI 348

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G+      ++G+  LID  Y  N  S+K  +  + +  P        + G     G 
Sbjct: 349 RVPGRVEVIDNDRGYLLLID--YAHNAMSLKNILETMRRYHPRQ---LWVLFGC---GGG 400

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMD--GL 433
            S +   ++  V   Y    V  S           +  +++ +  +    Y   +D    
Sbjct: 401 RSAARRREMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKET-KGQYQMMVDRKEA 459

Query: 434 FLFIQSSLVDGDVVVV--KS 451
             F+ +    GD++++  K 
Sbjct: 460 MRFMLAQGRPGDILILAGKG 479


>gi|254786996|ref|YP_003074425.1| UDP-N-acetylmuramate--L-alanine ligase [Teredinibacter turnerae
           T7901]
 gi|259509783|sp|C5BP33|MURC_TERTT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237685124|gb|ACR12388.1| UDP-N-acetylmuramate--alanine ligase [Teredinibacter turnerae
           T7901]
          Length = 473

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 161/433 (37%), Gaps = 52/433 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            +      +  G D +++     +  V      +       IPV    ++LG L +    
Sbjct: 63  IYVGHHAKNVHGVDVVVN-----SSAVDEANPELLEARQQRIPVVRRAEMLGELMRYR-- 115

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
                    IA+ G+ GKTTT  ++    +   K     IG   N  G    L       
Sbjct: 116 -------HGIAVAGTHGKTTTTSLIASIFAEGDKDPTFVIGGLLNSAGTNAALGA----S 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            + + E   S    +      ++P +AV+T I   H+  +      +     E    L  
Sbjct: 165 RYLVAEADESDASFLH-----LQPMVAVVTNIDADHMDTYGGDFGTLKKTFVEFLHNLPF 219

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQG 278
            G   +  DD     L         +T+ ++G S++ DF+    KQ S +   ++ + +G
Sbjct: 220 YGVAVMCGDDPVITSLIPDIA----RTVITYGFSEDCDFKAYDVKQESGKQRFKIKRPEG 275

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----AL 334
           + +++  +  G H   N    + + +    D     + L+ F    G G+R++      L
Sbjct: 276 EPLDIYLNMPGQHNVLNATAAVAVATDEGIDDIAIQQGLAQFM---GVGRRFQIYGDYPL 332

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            QG   ++ + Y  +P  + A I  +    P  + R   V          ++  + D  E
Sbjct: 333 PQGGSVMLVDDYGHHPREVAATIRAVRDSWP--DRRLFMVY--QPHRYTRTRDLYEDFVE 388

Query: 395 VLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVD 443
           VLS  +   +  V+ +G   +   D   L R+I         + E ++G+   ++  +  
Sbjct: 389 VLSSVDQLVLLEVYAAGEEPIPGADGRHLSRTIRTRGLVDPIFVEGIEGVPAVVKDLVKP 448

Query: 444 GDVVVVKSSNSCG 456
           GD+++ + + + G
Sbjct: 449 GDIIITQGAGNVG 461


>gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c]
          Length = 477

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 133/398 (33%), Gaps = 45/398 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  ++   LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFR---------HGIAVAGTHGKTTTTSLIAAVLSEGG- 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                      +      A++     + + E   S    +R     + P +AV+T I   
Sbjct: 142 -LDPTFVIGGQLLAAGANAKLGAG-QWLVVEADESDGSFLR-----LNPLVAVVTNIDAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL N+      I  A  E  + L   G   L  DD     L  K+     + + ++G   
Sbjct: 195 HLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELAGKAR----RHVMTYGIDA 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD +     Q   +    + L  GK + V     G H   N L    +   L    +  
Sbjct: 251 AADVRAEDVVQDGARMCFTLCLPEGKVIPVTLALPGRHNVLNALAASAVGWQLGVPPEVI 310

Query: 314 IKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +AL  F    G G+R+      A+  G    + + Y  +P  ++A   V + +      
Sbjct: 311 GRALKSFV---GIGRRFNDLGDVAIGNGACVRLIDDYGHHPRELEA---VFAAVRGGWPD 364

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPR 420
           +R+ V             F    A VLS         +Y    V + G    AL  A+  
Sbjct: 365 KRLVVAFQPHRYSRTRDQF-DAFAAVLSSVDALVLSEVYPAGEVPIPGADAKALARAIRA 423

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                      +  L   +   L +GD++++  +   G
Sbjct: 424 RGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGAGDIG 461


>gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
 gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
          Length = 508

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/482 (16%), Positives = 151/482 (31%), Gaps = 48/482 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   LL+A        +    +  I  +S+ I P   F  + G +  G  F   A+  GA
Sbjct: 4   SLSSLLKATNLKFGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYSALDSGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTT 121
              +     V S   L        D   A    L       +      ++ +TG+ GKTT
Sbjct: 64  ITALGRKIAVISDLPLVANTLTNADKQIAHWTSLLATNFWQQPSRWMILLGVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIF 165
              ++    ++  +  A  G+  N         +                +      G  
Sbjct: 124 VTHLIEHLSTASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVEAGSQIGAM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTG-T 222
           E+    L + R      +   AV T ++  HL     +E    +KA +FE   L   G  
Sbjct: 184 EVSSHALNQYR--VMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLLANHGPL 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L  +   LG     S  +  +A+  +R            +        
Sbjct: 242 AVINSDDLWGARLAQR---LGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLGEGY 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFT 340
                +GY    N+L  +G++       + + +KA+  F    GR +R     N+     
Sbjct: 299 FSSPMVGYFNLMNLLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLDLSP 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +   Y   P  ++ A+          +G  I V G     G   +     + E  +   
Sbjct: 359 SVIIDYAHTPDGLEKALIAARSF---VKGSLICVFGC---GGNRDKRKRPIMGETAARL- 411

Query: 401 ISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              + ++  +         +  +   +P    V          +   S+    D++++  
Sbjct: 412 ADEIIVTSDNPRTENPEEIIKDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILIVG 471

Query: 450 KS 451
           K 
Sbjct: 472 KG 473


>gi|260913004|ref|ZP_05919489.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
 gi|260632994|gb|EEX51160.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
          Length = 482

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 151/426 (35%), Gaps = 48/426 (11%)

Query: 63  KGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV++ +              IPV     +L  + +             IAI G+
Sbjct: 82  QDASVVVVSSAIKPDNIEVVTAKEKRIPVIQRAQMLAEIMRFR---------HGIAIAGT 132

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+++  +            N  +              + I E   S    + 
Sbjct: 133 HGKTTTTAMISMVYAEAGLD---PTFVNGGLVKSAGTNAHLGCSRYLIAEADESDASFLH 189

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    EE+          L   G   L  DD   E L
Sbjct: 190 -----LQPMVSVVTNIEPDHMETYNGSFEEMKQTYVNFLHNLPFYGLAVLCADDPVLEEL 244

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQ 294
             K      + + ++G S+ AD+++  ++Q   Q    V    G+ ++V+ +  G H A 
Sbjct: 245 MPKV----GRQVITYGFSEKADYRIEDYQQTGFQGHYTVMTPSGERIDVLLNVPGRHNAL 300

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    L +      + +  + AL+ F     R  +    +      ++ + Y  +P  + 
Sbjct: 301 NATAALAVAKEEGIENEAILAALADFQGAGRRFDQLGHFIRPSGKVMLVDDYGHHPTEVA 360

Query: 355 AAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             I    Q            PH   R   +  D  ++     +       +L +Y     
Sbjct: 361 VTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IMLDVYAAGEA 415

Query: 405 WLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++G    +L  ++     V   +    + L   +   L DGD+++ + + +    ++  
Sbjct: 416 PIAGADSRSLCRSIRNLGKVDPIFVSDHNQLGEILDQILQDGDLILAQGAGNV--SKIAR 473

Query: 463 LLLEEF 468
            L E++
Sbjct: 474 QLAEKW 479


>gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques
           L2-14]
          Length = 488

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 158/481 (32%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       V  +  DSR +     F  I G   DGH +      KG
Sbjct: 1   MKLDKLLERLDYTVVQGSDSTEVTTLINDSRKVEEGSVFVCISGAVSDGHKYAADVAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+       ++ V  V+D   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVEVPE---NVTVIKVEDTRYALALMSAAYFGYPADKMKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFE 166
             M+   L         IG+    I                +    A M     D  + E
Sbjct: 118 TYMIKSILEETGHKVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEMVEAGCDCVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +     G +   T  +   I + T +   H+        ++    K  +F+  +      
Sbjct: 178 VSS--QGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFDDYKRCKGLLFKQCKLG---I 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSM 281
            N DD +F+ +   S       I +FG S  AD +    +  S   ++ V          
Sbjct: 233 ANVDDKYFKDVFKGSTC----KIETFGFSPEADLRAENVELVSRPGYLGVAYHVAGVMDF 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N L  + +       V+    AL     K     R         FTL
Sbjct: 289 DVEIDVPGKFSVYNSLTAISVCRHFQVPVEMIKDALKKAKVKG----RIEMIKVSDDFTL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  N  S+++ ++ L + +P    R + + G     G  S+    ++ EV      
Sbjct: 345 MID-YAHNAMSLESLLTTLKEYNPK---RLVCLFGC---GGNRSKDRRFEMGEVSGRLAD 397

Query: 402 SHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450
             +  S          + + +   I      Y E         +       GDV+V+  K
Sbjct: 398 LTIITSDNPRFEEPQDIINDIKTGIAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|89074169|ref|ZP_01160668.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
 gi|89050105|gb|EAR55631.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
          Length = 487

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 155/425 (36%), Gaps = 50/425 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T +      L       IP+    ++L  L +             IAI G+
Sbjct: 80  QGASVVVASTAISKENPELVAATESRIPIVRRAEMLAELMRYR---------HGIAIAGT 130

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  + T   S      T+   G     +    T AR+     + I E   S    
Sbjct: 131 HGKTTTTALTTQIYSEAGLDPTFVNGG----LVKSAGTNARLGCS-RYLIAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P + V+T I   H+  +    E +     +    L   G   +  DD    
Sbjct: 186 LH-----LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            L  +      + + ++G +++AD ++  + Q   Q    V  + K ++ +  +  G H 
Sbjct: 241 ELLPRV----GRPMITYGFAEDADVRITNYTQTGHQGHFTVLRKDKPALNITLNTPGKHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N    + + +    D +  ++AL  F     R              ++ + Y  +P+ 
Sbjct: 297 ALNATAAIAVATEEGVDDEAIMRALIEFEGTGRRFDHLGEFETGNGNVMLVDDYGHHPSE 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           +   I      +   + R + +          ++  + D A VL   ++     V+ +G 
Sbjct: 357 VDVTIQAAR--AGWADKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLVMLDVYSAGE 412

Query: 410 HVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             +A  D  AL R+I         +    + L   + + + + D+V+ + +   G  ++ 
Sbjct: 413 APIAGADGRALCRTIRSRGKIDPIFVPEAEELPAILANIIHNDDLVLTQGAGDVG--KIA 470

Query: 462 NLLLE 466
             L E
Sbjct: 471 RQLAE 475


>gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 500

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 146/422 (34%), Gaps = 51/422 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 91  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 142 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 193

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 194 AVVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD ++  ++Q   Q    +  Q K  + V  +  G H A N    + + +
Sbjct: 250 HITTYGFSEDADVRIESYQQNGAQGTFFICRQDKPRLAVTLNAPGRHNALNAAAAVSVAT 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
                 +  ++AL  F    G G+R+             +    ++ + Y  +P  + A 
Sbjct: 310 EEGIADEDILRALEGFQ---GTGRRFDFLGEYALENVNGKEGKAMLVDDYGHHPTEVDAT 366

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLA 413
           I       P+   R + +          ++  + D A VLS  ++     V+ +G   + 
Sbjct: 367 IKAARAGWPN--RRLVMIF--QPHRFTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIP 422

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I                L   +   L + D+++ + + + G  ++   L 
Sbjct: 423 GADSRSLCRTIRGRGKLDPVLVSDAATLPATLAQFLQNDDLILTQGAGNIG--KVARTLA 480

Query: 466 EE 467
           E+
Sbjct: 481 EQ 482


>gi|330720684|gb|EGG98925.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 138/390 (35%), Gaps = 43/390 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACI 140
           IP+    ++LG L +             IA+ G+ GKTTT  +L   L+      T+   
Sbjct: 102 IPLVPRAEMLGELMRYR---------HSIAVAGTHGKTTTTSLLASLLAEGGLDPTFVIG 152

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N+      T A++       + E   S    +      ++P  A++T I   H+S +
Sbjct: 153 GLLNS----AGTNAKLGAS-RILVAEADESDASFLH-----LQPMTAIVTNIDADHMSTY 202

Query: 201 S-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
                ++          L   G +    DD   + +         + + ++G ++ AD++
Sbjct: 203 GGDFSKLTDTFISFLHNLPFYGLVVACIDDDNVKAVLPDVS----RPVITYGVAEEADYR 258

Query: 260 LRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
               KQ   +     +     + ++V  +  G+H   N +  + + +      +    AL
Sbjct: 259 AVDIKQTGLRMTFTAKRPNDHQDLQVTLNIPGHHNVLNAMAAIAVATDEGVSDEAICAAL 318

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F     R +            L+ + Y  +P  +KA +  +         RR+ +L  
Sbjct: 319 QKFEGVGRRFQICGEFETVNGSVLMVDDYGHHPREVKATLDTVRS---SWPDRRLVMLYQ 375

Query: 378 MCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--Y 426
                  ++    D   VLS          Y      + G    +L  ++ +   V   +
Sbjct: 376 -PHRYSRTRDLFEDFISVLSEVDSLLLMEVYPADEEPIPGADGRSLCRSIRQRGQVDPVF 434

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +  + +   +   L DGD+++ + + + G
Sbjct: 435 IDHGEDVIDVLARELKDGDILLTQGAGNIG 464


>gi|298531034|ref|ZP_07018435.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509057|gb|EFI32962.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 453

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 142/398 (35%), Gaps = 46/398 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACI 140
           IPV    ++L  L +L          T +A+ G+ GKTTT   L           T    
Sbjct: 89  IPVIPRAEMLAELMRL---------KTGVAVAGTHGKTTTTSFLGTIFKEAGLDPTVIIG 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G  N +         +P   ++ I E   S    +  L     P I ++T I   HL  +
Sbjct: 140 GRLNKYGS-----NALPGTGEYLIAEADESDGSFLTLL-----PIINIVTNIGADHLDYY 189

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             ++EI  +       +   G   +  DD     +  +      + + ++G  + +  + 
Sbjct: 190 RDLDEIRESFVRFMNNVPFYGLNVVCGDDPEIRQVLDRVK----RPVLTYGFQEQSRLRA 245

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                     +     Q     V  +  G H   N L  +G+      D    +++L+ F
Sbjct: 246 EILSTSPGSQFNVFHDQNFWGRVKLNHPGRHNVLNCLAAIGVAIQAGIDKQDILRSLADF 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G G+R+     +    ++D+ Y  +P  + A +    Q  P    RR+ VL     
Sbjct: 306 G---GVGRRFERKGIKDDVIVVDD-YGHHPTEIAATLETARQCHPD---RRLVVLFQPHR 358

Query: 381 MGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIH--VHYSET 429
               ++ F  +   VL+         +Y  S   + G +  +L   + +     V + ++
Sbjct: 359 F-TRTRDFFGEFCRVLAGADLLLLTEIYPASEDPIPGVNGWSLAQGVMQVARTPVRFYQS 417

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +D     + S L  GD+ +   + +   +++    ++E
Sbjct: 418 LDEAGRDLDSVLKQGDLFMTLGAGNV--WQVGERFIQE 453


>gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC
           17616]
 gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 159/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARAQRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVW------LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+      ++  +  AL  AL  +  V   + ET+D L   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|148980589|ref|ZP_01816136.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
 gi|145961172|gb|EDK26488.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
          Length = 486

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 138/394 (35%), Gaps = 40/394 (10%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+    ++L  L +             IA+ G+ GKTTT  ++T   S            
Sbjct: 107 PIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFV 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
           N  +                I E   S    +      ++P ++++T I   H+  +   
Sbjct: 155 NGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGD 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +     +    L   G   +  DD     L  +      + + ++G S++AD ++  
Sbjct: 210 FETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPQVS----RQVITYGFSEDADIRIEN 265

Query: 263 WKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + Q  +Q    V  +GK ++++  +  G H A N    + + +      +  +KA++   
Sbjct: 266 YVQEGQQGKFTVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTE 325

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R              ++ + Y  +P  +   I          + R + +       
Sbjct: 326 GTGRRFDHLGEYETGNGVAMLVDDYGHHPTEVDVTIQAARS--GWADKRLVMIF--QPHR 381

Query: 382 GELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETM 430
              ++  + D A VL   ++     V+ +G   +A  D   L R+I         +   +
Sbjct: 382 YSRTRDLYDDFANVLEQVDVLILLDVYSAGEKPIAGADGRSLSRTIRGRGKIDPIFVADI 441

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L   + + +  GD+V+ + +   G  R+   L
Sbjct: 442 NTLPSVLANVIQGGDLVLTQGAGDVG--RVAKQL 473


>gi|163751825|ref|ZP_02159041.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
 gi|161328310|gb|EDP99471.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
          Length = 489

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 155/427 (36%), Gaps = 44/427 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH            +V    D           L IPV    ++L  L +           
Sbjct: 72  GHQ-AEQVHDADVVVVSTAIDAENPELVAARKLRIPVVQRAEMLAELMRYR--------- 121

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  ++    +   +           +    T AR+     + I E  
Sbjct: 122 HGVAVAGTHGKTTTTSLIASVYAQAGRDP--TFVIGGLLNSAGTNARL-GHSRYLIAEAD 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P ++V+T I   H+  +    E++ S   +    L   G   +  
Sbjct: 179 ESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFEKLKSTFIDFLHNLPFYGVAVMCI 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286
           DD     L  K      + I S+G S++AD Q   + Q   +S   ++ +G   +EV+ +
Sbjct: 234 DDPVIRELLPKV----GRKIVSYGFSEDADIQALNFVQQGYRSHFTLRREGVADIEVMVN 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + + +    + +  ++AL+ F     R ++           ++ + Y
Sbjct: 290 LPGEHNVLNALAAIAVATEDEIEDEAIVRALAEFEGIGRRFQQLGSFATSKGEVMLVDDY 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-------- 398
             +P+ + A I       P  + R + +          ++  + D  EVLS         
Sbjct: 350 GHHPSEVTATIKAARLGWP--DKRLVMIY--QPHRYSRTRDLYDDFVEVLSQVDSLILLD 405

Query: 399 -YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            Y      + G    AL  ++ +   +   +    + L   + S L DGD+++ + + + 
Sbjct: 406 VYAAGEAPIPGADSRALCRSIRQRGQLDPIFVAGAEPLLSLLPSILQDGDLLLTQGAGNI 465

Query: 456 G-FYRLI 461
           G   +LI
Sbjct: 466 GALSKLI 472


>gi|315125604|ref|YP_004067607.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
 gi|315014117|gb|ADT67455.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
          Length = 469

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 161/449 (35%), Gaps = 46/449 (10%)

Query: 44  FAIKGPHYDGHDFILHA-----VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
            A +G    G D    A     ++ GA + + + +      ++ +    +D     +   
Sbjct: 24  LAFEGYRITGSDIAHSAMTERLIKAGAEVFIGHHENNVKDANVVVVSSAIDKTNPEIQAA 83

Query: 99  AVA-----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             A           A L      IAI G+ GKTTT  ++    +               I
Sbjct: 84  QAARIPVVRRAEMLAELMRFRHGIAIAGTHGKTTTTSLIASIYAQAGLDP------TFII 137

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
           G  L  A     V    F +  +   +  FL   ++P ++VIT I   H+  +   +E++
Sbjct: 138 GGLLNSAGSNAKVGKSDFLIAEADESDASFL--HLQPMVSVITNIEEDHMETYGGSLEKM 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                E    L   G   +  D      L  +      + + ++G+S  AD+++  + Q 
Sbjct: 196 KDTYVEFIHNLPFYGLAVVCIDSDVAAELIPRF----GRPVITYGESHEADYRMSDFSQT 251

Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +      V   QG+S+    +  G H A N    + +           + AL  F     
Sbjct: 252 ANTCQFTVTNKQGESLTAKLNMPGKHNALNATAAIAVAKDQNIANHAILAALDTFEGIGR 311

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R + Y    N+    ++ + Y  +P+ + A I+   +  P  + R + V          +
Sbjct: 312 RFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWP--DKRLVMVY--QPHRYTRT 367

Query: 386 QSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFL 435
           +  + D  +VL+         +Y+     + G    +L  +L  R     +  +   L  
Sbjct: 368 RDLYEDFVKVLADVDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEPLHVASSSELAG 427

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + + L + D+V+ + + + G  +L+  L
Sbjct: 428 VLANCLQNNDLVLTQGAGNIG--QLVKNL 454


>gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardia farcinica IFM 10152]
 gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Nocardia farcinica IFM
           10152]
          Length = 536

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 167/492 (33%), Gaps = 61/492 (12%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            PL T  +L      H+   VP    V GI   S ++ P + F A+ G H  G  F   A
Sbjct: 30  TPLTTVLEL---TGAHAAAPVPADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDA 86

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           V +GA  V  + +    +  L++PV   +     L +L+     +   +  +I ITG+ G
Sbjct: 87  VARGAVAVFTDAEGARVLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSG 146

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDF 162
           KTTT  ++   L++   + A IG+    IG     + +                   V  
Sbjct: 147 KTTTSYLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQA 206

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--T 220
            + E+    L   R     VR  +   T ++  HL   +  E+  +AK  +FE       
Sbjct: 207 VVMEVSSHALALGR--VDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAA 264

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGK 279
            T  +  DD++   L     A       +   +  AD++          +          
Sbjct: 265 RTAVVCVDDAWGRRLAEGLAAP-----ITVSTTGEADWRVAGGVATVGAEQEFTAAGPAG 319

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G +   N L+ + + +   A       A       +  G+  R    Q F 
Sbjct: 320 ELGVRLRLPGRYNVANALLAVAVCAAARA---DPAVAAPALATVDVPGRMQRVERGQDFL 376

Query: 340 TLIDESYNANPASMKAAISVLSQ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            ++D  Y   PA++++ I+ L +      P   GR   V+G     G    +    L   
Sbjct: 377 AVVD--YAHKPAALESVIATLREHLAAADPEHPGRLAVVVG----AGGDRDAGKRALMGA 430

Query: 396 LSLYNISHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSS-------------L 441
                   + ++  +      A +  ++     E    +   ++                
Sbjct: 431 AGARGADLLVITDDNPRTEDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWA 490

Query: 442 VDGDVVVV--KS 451
             GD V+V  K 
Sbjct: 491 RRGDAVLVAGKG 502


>gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
 gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
          Length = 476

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 145/417 (34%), Gaps = 47/417 (11%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV++ +      V +     IPV     +L  + +             IAI G+ 
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVIQRAQMLAEIMRFR---------HGIAIAGTH 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+ +  +            N  +              + I E   S    +  
Sbjct: 128 GKTTTTAMVAMIYAQAGLD---PTFVNGGLVKSAGTNAYLGCSRYLIAEADESDASFLH- 183

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               ++P ++V+T I P H+       EE+          L   G   +  DD     L 
Sbjct: 184 ----LQPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGLSVMCADDPVLMELS 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQN 295
           ++      + + ++G S  AD+++  ++Q   Q    V    G+ ++V+ +  G H A N
Sbjct: 240 SQV----GRQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERIDVLLNVPGKHNALN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L +      + +  + AL+ F     R  +    +      ++ + Y  +P  +  
Sbjct: 296 ATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVNV 355

Query: 356 AISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            I    Q            PH   R   +  D  ++        +D+  +L +Y      
Sbjct: 356 TIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-----VDVLIMLDVYAAGEQA 410

Query: 406 LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYR 459
           ++G    +L  ++     V          L   +   + DGD+++ + + +     R
Sbjct: 411 IAGADSRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLILAQGAGNVSKLSR 467


>gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 464

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 162/423 (38%), Gaps = 47/423 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP      +LG + K             IA++GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRATLLGLIMKKYKYG--------IAVSGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++  + +         Y+  + V   +  +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVIFNGMG--------YDPTVLVGGEVDVIGGNVRVGNSEYFVTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDGYVVACKDDANTMYVVN 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQN 295
             +    K I ++G  K++D++ +      +  +  +V  + + M        G H   N
Sbjct: 231 GLN----KNIVTYGIYKDSDWKAKNIGFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKA 342

Query: 356 AISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +                PH   R  A+L +  E  + +    I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKALLNEFAESFDNADK--IIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S   ++ L     +   V Y +  D +  ++  +   GD+V+   + +   Y +  + L+
Sbjct: 401 SSKDLVEL--ISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVLTIGAGNI--YEVGEMFLK 456

Query: 467 EFP 469
           ++ 
Sbjct: 457 DYK 459


>gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli WV_060327]
          Length = 495

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 164/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis TXDOH]
          Length = 514

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 151/459 (32%), Gaps = 46/459 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   + F A      D   FI  A+ +GA  V+   +   + G        V
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVLYQPEGFPAAGLDPATSLAV 89

Query: 89  D--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L                  + +TG+ GKT+  + +  AL+++++  A IG+  + 
Sbjct: 90  PALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGTLGSG 149

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     +AV T
Sbjct: 150 MPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDVAVFT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      +   +AKA++F          +N DD     L A     G     ++
Sbjct: 208 NLTQDHLDYHRTFDAYEAAKAKLFAW-RGLHCAVVNRDDPAGRRLLANLA--GRVRTIAY 264

Query: 251 GKSKNA-------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           G    A       +      +  +  +   V       +V    +G     N+L  LG +
Sbjct: 265 GIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVLGTL 324

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+  +       GR +R      Q    L+   Y   P +++  +  L  I
Sbjct: 325 LAADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVVDYAHTPDALEKTLEALRPI 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    G  + + G   +     +     +AE L+      V ++  +  +         +
Sbjct: 384 AQARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DKVVVTSDNPRSEEPQKIIDQI 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +    E      L         DVV++  K 
Sbjct: 440 VAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|153854762|ref|ZP_01995996.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
 gi|149752669|gb|EDM62600.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
          Length = 459

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 148/401 (36%), Gaps = 36/401 (8%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEML 126
           VVV T  +            V   L  L +  +  +L +   + IAI+G+ GKTTT  ML
Sbjct: 72  VVVYTAAIHPDNEEFA--EAVKQNLPMLTRAELLGQLMTNYDVPIAISGTHGKTTTTSML 129

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L          G  +  I V   L  +  ++  G  E  ++   E         P I
Sbjct: 130 SHIL--------LAGEMDPTISVGGILKAIGGNIRVGNSEYFVTEACEYTNSFLHFFPKI 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VI  I   HL  F  + +I ++     + L K GT+ +N +    E + A         
Sbjct: 182 GVILNIDEDHLDFFKDLADIRNSFHRFAKLLPKDGTLVINDNIPNLEEITADLDC----R 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
           +  +G   + D+         +  +  ++   G+ ++ +   + G H   N L  + +  
Sbjct: 238 VIRYGNDSSLDYSATNVLHDKKGEASFDLVKSGEFIDRISLSVNGDHNVSNALSAIAVAD 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
           +L        + L  FH   G  +R+         T+ID+ Y  +P  + A ++   +  
Sbjct: 298 LLGVPFTKIKEGLKSFH---GTDRRFEYKGEVNGVTVIDD-YAHHPTEINATLTAAKEYP 353

Query: 363 -------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+  +  +   L+ + H+ LA++ +      +   G     + 
Sbjct: 354 HKEIWCIFQPHTYTRTKALFPEFVD--ALTHADHVILADIYAARETDTL---GMSSEMIA 408

Query: 416 DAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + L  +    +Y  + + +  F       GDV++   + + 
Sbjct: 409 EELKKKGCDAYYFPSFEEIENFCLDKCQKGDVLITMGAGNV 449


>gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
 gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
          Length = 495

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 167/482 (34%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL A+   +    P   +  +++DSR  A  + F AIKG   DG  +I  A+ +G 
Sbjct: 5   NLSDLLGALGIQA----PSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+   + +A+ G +     IPV  ++++   L+KL      +  +K  +I +TG+ GK
Sbjct: 61  CAVLAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFYHQPANKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +  A +G+  N +   +  A         I               
Sbjct: 121 TTTTQLLAQWAQGLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGATFT 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    +V T ++  HL     +     AK  +F     +G   +
Sbjct: 181 AMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFS-THHSGEKII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD+           L      +      A+      Q  +       + +        
Sbjct: 240 NADDAVGHKWLTH---LPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGE 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L  L  +  L   +D  IKA S   P  G   R          T
Sbjct: 297 GEIESPLMGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCG---RMEVFSADNRPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y   P +++ A+        H  G+   + G   +  +  +     +AE  +   
Sbjct: 354 VIVD-YAHTPDALEKALQA---ARLHCTGKLWCIFGCGGDRDKGKRPLMGAVAEQFA--- 406

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +  +         +   L         E        +       D+++V  
Sbjct: 407 -DKVVITDDNPRSEEPQAIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 461

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 147/401 (36%), Gaps = 39/401 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +    +L IP+    ++LG L K           T IA++G+ GKTTT  M
Sbjct: 77  AAINRNNPELIEAVALKIPMLTRAELLGQLMKNYD--------TPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G  +  I V   L  +  ++  G     ++   E         P 
Sbjct: 129 ISHIL--------LEGDLDPTISVGGILKAIGGNIRVGNSGTFITEACEYTNSFLHFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VI  I   HL  F  +E+I  +  +  E L + GT+ +N +   +  +          
Sbjct: 181 ISVILNIEEDHLDFFKDLEDIRHSFHQFAELLPEDGTLIINAEIKDYAEIYEGLSC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
            + ++G +   D+  +            ++  +G+  + +     G H   N L  + + 
Sbjct: 237 NVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            IL   +D   + L  F    G  +R+         T+ID+ Y  +P  + A +      
Sbjct: 297 DILGLSIDITKRGLLSFT---GTDRRFEYKGEFNGVTVIDD-YAHHPTEILATLKAAQHS 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  E   LS + H+ LA++ +      + +S   +   
Sbjct: 353 LHNSVWCVFQPHTYTRTKAFFHEFAE--ALSHADHLVLADIFAARETDTLGISSADLAKE 410

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + L      HY  +   +  F++ +   GD+++   +   
Sbjct: 411 TEKL--GTDTHYFPSFAQIEAFLKENCRPGDLLITMGAGDV 449


>gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 410

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 143/426 (33%), Gaps = 56/426 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I    I +     + G++ + + I     F  +     D   +I   +  G
Sbjct: 1   MKLRELLHNI----IDVNFDIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYIDQILSCG 53

Query: 65  AGLVVVNTDMVASIGSLSIP------VFGVDDVLGALNKL-AVAARLRSKATIIAITGSV 117
           A  ++ +  +  ++    IP           +     +++ +   + +    + A+TG+ 
Sbjct: 54  AKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVDVDF 162
           GKT+  E       +     A IG+    I                  L      + V+ 
Sbjct: 114 GKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEH 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG 221
            + E     + + R   H ++   A  T  +  HL     +      K  +F E L +  
Sbjct: 174 LVLESSSHGIDQYRI--HGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGK 231

Query: 222 TIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           T  LN D D +  LLK          + ++GK K +D  L +         + V++  + 
Sbjct: 232 TAILNADIDEYGALLKIAEKRSN--KVVTYGK-KGSDITLLEQTSTPNGQHLTVKIDNQI 288

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G   A N+L  +GI  +   ++      +       GR ++ +         
Sbjct: 289 YNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVK--------P 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y   P+++K     L  +  H   + I V G     G   Q+   ++ ++  +Y 
Sbjct: 336 FAFVDYAHTPSALK---QALLSLKWHINKKIILVFGC---GGNRDQTKRSEMGKIAQMY- 388

Query: 401 ISHVWL 406
              V +
Sbjct: 389 ADKVII 394


>gi|115372803|ref|ZP_01460109.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823487|ref|YP_003955845.1| UDP-n-acetylmuramate--l-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370284|gb|EAU69213.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396559|gb|ADO74018.1| UDP-N-acetylmuramate--L-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 475

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 152/403 (37%), Gaps = 44/403 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +     IPV    ++L  L +L  A         +A+ GS GKTTT  M
Sbjct: 84  SAVKKDNPEVVAARQRKIPVIPRAEMLAELMRLKYA---------VAVAGSHGKTTTTSM 134

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +   LS+     T    G  N           +  +   G  EL +    E       + 
Sbjct: 135 VATVLSAAGLDPTAVVGGKVNV----------LDSNAKLGKSELMVVEADESDGSFLKLH 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I P H+ ++  ++ + +A  E    +   G   L  D    + L  +     
Sbjct: 185 PSIAVVTNIDPEHMDHYGTLDVLQTAFVEFCNRVPFYGLNVLCLDHPNVQALLPRLE--- 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
            K   ++G S  AD++L         +  +   + + + E     +G H A N L  + +
Sbjct: 242 -KRAVTYGSSHMADYRLEGVTLEGFTTRFQAFRRDEPLGEFRVRMVGAHNALNALAVIAV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D    AL+ F    G  +R+      G  T++D+ Y  +P  + A ++   +
Sbjct: 301 AEEMEIPLDMVRGALAEFG---GVQRRFTVRGEVGGVTVVDD-YGHHPTEVMATLAGARK 356

Query: 363 ISPHGEGRRIAVLGDMCE-------MGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLAL 414
                 GRR+ V             + E + SF+  D+  V S+Y      + G     L
Sbjct: 357 A----FGRRLVVAFQPHRYTRTHDLLKEFATSFNDSDVLFVTSVYGAGEEPIPGATGDVL 412

Query: 415 KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +A+    H  V + E    L   +   +++GD+V+   +   
Sbjct: 413 AEAIRDHGHRDVTFVEKRMDLPAALAQRVMEGDLVLTLGAGDI 455


>gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336]
 gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336]
          Length = 476

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 145/417 (34%), Gaps = 47/417 (11%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV++ +      V +     IPV     +L  + +             IAI G+ 
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVIQRAQMLAEIMRFR---------HGIAIAGTH 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+ +  +            N  +              + I E   S    +  
Sbjct: 128 GKTTTTAMVAMIYAQAGLD---PTFVNGGLVKSAGTNAYLGCSRYLIAEADESDASFLH- 183

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               ++P ++V+T I P H+       EE+          L   G   +  DD     L 
Sbjct: 184 ----LQPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGLSVMCADDPVLMELS 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQN 295
           ++      + + ++G S  AD+++  ++Q   Q    V    G+ ++V+ +  G H A N
Sbjct: 240 SQV----GRQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERIDVLLNVPGKHNALN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L +      + +  + AL+ F     R  +    +      ++ + Y  +P  +  
Sbjct: 296 ATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVNV 355

Query: 356 AISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            I    Q            PH   R   +  D  ++        +D+  +L +Y      
Sbjct: 356 TIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-----VDVLIMLDVYAAGEQA 410

Query: 406 LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYR 459
           ++G    +L  ++     V          L   +   + DGD+++ + + +     R
Sbjct: 411 IAGADSRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLILAQGAGNVSKLSR 467


>gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 484

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 158/467 (33%), Gaps = 52/467 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I+G  + +  +  V  I+IDSR+I  +  FFA +G   D H F       G    VV   
Sbjct: 12  IKGFDLDVDFETDVKDINIDSRNIKRKAPFFAFQGAAVDSHKFAAEVYASGKVPFVVAEH 71

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            +       +P   V+D   AL +       +   +   IA+TG+ GKTTT  ++   L 
Sbjct: 72  KIE-----GVPTVVVEDGRKALARACRNFFGKPDEEMDSIAVTGTNGKTTTTYIINEILK 126

Query: 132 SIKKTYACIGSYNNHIGVPLT--------------LARMPVD--VDFGIFELGMSHLGEI 175
           +  +    +G+                        + R   D   D  + E+    L + 
Sbjct: 127 TAGRKSVLVGTTGVKYDDKFIYMDSTTPPTYEFFKVLRDAKDAGCDTLVMEVSSHALHQH 186

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R   + V   +A+ T ++  HL     ++E   AK  +F   E +    +  D  F E L
Sbjct: 187 RI--NGVVFDVAIFTNLSGDHLDYHKTMDEYFEAKKILFTP-EYSRVGVIGKDSEFGERL 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             ++    +    S+G +  ++    +          +      S+E+    +G H  +N
Sbjct: 244 LKEAEVDRV----SYGITNKSEITAEEIWFGLSGLRAKFVYPAGSIEMESSLVGLHNLEN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ++       +L  D       +       GR +++     +     I   +     ++K 
Sbjct: 300 LMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKFE----KSNGAYIFVDFAHTDDALKN 355

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
            +  L     +   R I V G     G+  +S    +A+     +   V ++  +     
Sbjct: 356 VLEALGSFKEN---RVITVFGC---GGDRDRSKRPRMAKTA-ELDSDVVIVTSDNPRTED 408

Query: 413 ---ALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               ++D       +  V                    D+V++  K 
Sbjct: 409 PQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKG 455


>gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
 gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
          Length = 467

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 164/427 (38%), Gaps = 53/427 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD   + +         K I  +G + +A  +    +    +     ++     +++V +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGLAPDAQVRAVNVEARDGKMHFTAMREDAAPLDIVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFT 340
             G H  QN L  + I + L        +AL+ F+    R +RY           +G +T
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGEPRGAYT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +
Sbjct: 334 LVDD-YGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVD 388

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+ 
Sbjct: 389 ALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALAALVRDGDVVIT 448

Query: 450 KSSNSCG 456
             + S G
Sbjct: 449 MGAGSIG 455


>gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
          Length = 423

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 149/450 (33%), Gaps = 56/450 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I    I +     + G++ + + I     F  +     D   +I   +  G
Sbjct: 1   MKLRELLHNI----IDVNFDIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYIDQILSCG 53

Query: 65  AGLVVVNTDMVASIGSLSIP------VFGVDDVLGALNKL-AVAARLRSKATIIAITGSV 117
           A  ++ +  +  ++    IP           +     +++ +   + +    + A+TG+ 
Sbjct: 54  AKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVDVDF 162
           GKT+  E       +     A IG+    I                  L      + V+ 
Sbjct: 114 GKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEH 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG 221
            + E     + + R   H ++   A  T  +  HL     +      K  +F E L +  
Sbjct: 174 LVLESSSHGIDQYRI--HGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGK 231

Query: 222 TIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           T  LN D D +  LLK          + ++GK K +D  L +         + V++  + 
Sbjct: 232 TAILNADIDEYGALLKIAEKRSN--KVVTYGK-KGSDITLLEQTSTPNGQHLTVKIDNQI 288

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G   A N+L  +GI  +   ++      +       GR ++ +         
Sbjct: 289 YNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVK--------P 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y   P+++K     L  +  H   + I V G     G   Q+   ++ ++  +Y 
Sbjct: 336 FAFVDYAHTPSALK---QALLSLKWHINKKIILVFGC---GGNRDQTKRSEMGKIAQMY- 388

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              V ++  +      A  R   + +    
Sbjct: 389 ADKVIITDDNSRDEDPAKIRHDILLHCPDA 418


>gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 473

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 157/464 (33%), Gaps = 56/464 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G++ +  V G+  DSR + P   FF+I    Y        A  + A        +  ++ 
Sbjct: 5   GLMQKLSVTGLCDDSRRVKPGNLFFSIPAEGY-------EAFARSAIAAGAVAVVGETMA 57

Query: 80  SLSI--PVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKK 135
              +      V DV  A  + A        + +I  AITG+ GKTT+  ++   L +  +
Sbjct: 58  PEGLTSKWIQVPDVKAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGR 117

Query: 136 TYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLT 179
             A +G+  N IG     A +                       + E     L + R   
Sbjct: 118 KTALLGTIKNKIGDKSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGR--V 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAK 238
             +R    + + +   HL     ++    AK  +F + L + G   +N DD+  E L   
Sbjct: 176 AGIRFRSGLFSNLTQDHLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLFNA 235

Query: 239 SHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                +  +   GK+K AD +   + K   +     + +     +      G     N+L
Sbjct: 236 LDCRKVA-VSRLGKAK-ADVKPFGEIKSTEDGLEFTLPMIATD-KFETPLCGDFNVDNLL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L     L    D   KA          G+  +     G   ++D  Y   P +++  +
Sbjct: 293 LVLAWAHALCVPEDAMRKA---ITTVRVPGRFEKVWSKDGKHVIVD--YAHTPDALERVL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-------- 409
           +V   +     G+   V G   +  +  +     +AE ++       WL+          
Sbjct: 348 NVARSL---CRGKLSTVFGCGGDRDKTKRPIMGGIAERIA----DKAWLTSDNPRTEKPA 400

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++A   A   +      E  +       + L  GD +V+  K 
Sbjct: 401 DIIADVRAGMTTDKFEVVENREEAINRACAELKSGDWLVIAGKG 444


>gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 529

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 162/470 (34%), Gaps = 59/470 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLS 82
             + G+++ S    PQ  F AI G    G  F   A + GA  V+ +    +      L 
Sbjct: 46  TRIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAAKEAGAVAVLTDAAGASRAVSEGLG 105

Query: 83  IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  VDD    +  LA             +A+TG+ GKTTT  ++  AL+++    A  
Sbjct: 106 LPVVVVDDPRSHVAALAAAVYGHPARDLVTLAVTGTNGKTTTSYLMRAALAAVHPRAALC 165

Query: 141 GSYNNHI-----GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+    +         T A  PV                + E     L   R     V  
Sbjct: 166 GTVETRVGPVSFEAERTTAESPVVQRFLALARECGEGAAVIETSAHALSLHR--VDGVVF 223

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL  +  +E   +AKA +F   E      +  DD +   L A +     
Sbjct: 224 DVAAFTNLQHDHLDYYGDMEGYFNAKALLFTP-EHAKRAVVCVDDEWGRRLAASAPI--- 279

Query: 245 KTIYSFGKSKNAD----FQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMT 299
             + +     +A      +         ++    V   G   EV    +G    QN  + 
Sbjct: 280 -PVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVDPDGTGHEVRMPILGEVNVQNTAVA 338

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L         +D A++AL       GR +  +     G   L+   Y   P +++  +  
Sbjct: 339 LVSAVAAGVPLDGALRALEAAPQIPGRME--KVNPVPGNQPLVVVDYAHTPEALEWTLRS 396

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
             +++    GR   V G   +  + S+  H      ++      +W++          ++
Sbjct: 397 TRELTA---GRLHIVFGTDGDR-DASKREH---LAGIAAAGADVLWVTDENPRTEDPQSI 449

Query: 415 KDALPRSIHVHYSETMDGLFLFI--------QSSL--VDGDVVVV--KSS 452
           +D L R I      +M  +   +        ++ L    GD V++  K +
Sbjct: 450 RDYLLRGI-ASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIITGKGA 498


>gi|46580907|ref|YP_011715.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601792|ref|YP_966192.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|48428298|sp|P61678|MURC_DESVH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224686|sp|A1VBE9|MURC_DESVV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46450327|gb|AAS96975.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562021|gb|ABM27765.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|311234598|gb|ADP87452.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 454

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 142/385 (36%), Gaps = 42/385 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++L  L +L          T IAI G+ GKTTT  +         K    I  
Sbjct: 89  IPIIPRAEMLAELMRLR---------TGIAIAGTHGKTTTTSLTAAIFDVAGKDPTVI-- 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               IG  L        +  G + +  +   +  FL   + P + V+T +   H+  ++G
Sbjct: 138 ----IGGRLNAYGANARLGEGEYLIAEADESDGSFLC--LFPIVNVVTNVDMDHVDFYAG 191

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            +EI  A       +   G   +  DD     L  +      + + ++G  K+   +   
Sbjct: 192 QKEIDEAFVTFMNKVPFYGANVVCGDDPGVRRLLPQVK----RRVVTYGFGKDNALRAE- 246

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              C+E S   V L+G  +  VH G  G H   N L  +G+        +  I+ L+ F 
Sbjct: 247 VTSCAETSVFTVFLRGGRLGEVHLGQPGRHNILNALAAIGVALEAGISPEHCIEGLARFG 306

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +       +   T++D+ Y  +P  + A ++    + P  + R + V       
Sbjct: 307 GVGRRFE---RRGERDGVTVVDD-YGHHPVEIAATLATARSVYP--DRRLVVVF--QPHR 358

Query: 382 GELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLALKDALPR--SIHVHYSETM 430
              +Q+   +  +V           +Y  S   + G    +L   + +  +  V Y ++ 
Sbjct: 359 FSRTQALFGEFCKVFEPVDKLLLTEIYPASEKPIPGVSGQSLAQGIRQVSNTDVTYYQSF 418

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
           D +   +   L  GDV++   + S 
Sbjct: 419 DEILAALPGVLRPGDVLLTLGAGSV 443


>gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 482

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 98/452 (21%), Positives = 166/452 (36%), Gaps = 40/452 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G +ID R +AP   F A  G  ++G DFI  AV+ GA  VV   + V        
Sbjct: 18  DANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFIADAVKAGAVAVVARPEAVVEGAVH-- 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 +   A   LA         T++A+TG+ GKT+T EM         ++ A IG+ 
Sbjct: 76  --VADAEPRRAFAALAAQFFQPVPETVVAVTGTNGKTSTVEMTRQIWRMAGRSAASIGTL 133

Query: 144 NNHIGVPLT------------LARMPVDVDFGIFELG--MSHLGEIRFLTHLVRPHIAVI 189
                                L+ M      G+  +    S  G  +F    +R      
Sbjct: 134 GVTTADESVSTGLTTPDIVTFLSNMTGLAREGVTHVAYEASSHGLSQFRNEGLRVIAGAF 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL     +E+  +AK  +F+  ++  G   +  DD +           G++ + 
Sbjct: 194 TNLSRDHLDYHPTMEDYFAAKMRLFDHVVDDGGVAVVWMDDEWSGRAVEHVRRRGLR-LL 252

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S G+      +L           +EV   G   ++    IG + A N L++ G+      
Sbjct: 253 SVGEQGE-TIRLLARTPTQLGQVLEVAFDGARRKISLPLIGAYQAANALVSAGLAIASGI 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      AL+   P  GR +R   A+N+    +  + Y   P +++AAI+ L    PH +
Sbjct: 312 DAGQVFDALARLQPVRGRLER--AAINRAGAPVYVD-YAHTPDAIEAAIAALR---PHVK 365

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI- 422
           GR I V G     G+  +    ++    +      V ++     G    A++ A+     
Sbjct: 366 GRLITVFGA---GGDRDEGKRPEMGR-AACAGSDLVIVTDDNPRGEDPAAIRAAIMAGCA 421

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +               +     D+V+V  K 
Sbjct: 422 DNAREIGDRRSAIAAAIAEAGRDDIVLVAGKG 453


>gi|301384719|ref|ZP_07233137.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 486

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 162/431 (37%), Gaps = 50/431 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
             +    F+ H  +   GA ++VV++ +  S   +       IPV    ++L  L +   
Sbjct: 58  ESFGAQIFVGHRAENTVGADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR- 116

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPV 158
                     IA+ G+ GKTTT  ++    ++     T+   G  N       T A++  
Sbjct: 117 --------HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN----AAGTNAQLGT 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +AV+T I   H+  +     ++     E    L
Sbjct: 165 S-RYLIAEADESDASFLH-----LQPLVAVVTNIDADHMVTYGGDFNKLKKTFVEFLHNL 218

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     +      L  +   ++G S+++D +    +Q    ++  V  +
Sbjct: 219 PFYGLAVMCIDDPVVRDIL----PLVKRPTMTYGFSEDSDVRAINVRQDGMLTFFTVLRR 274

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +  ++V  +  G H   N L T+ I +      +  ++ LS F     R + Y     +
Sbjct: 275 DREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVE 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++ + Y  +P  + A IS +    P  + R + V          ++  + D  +VL
Sbjct: 335 GGHVMLVDDYGHHPREVAAVISAVRGGWP--DRRLVMVY--QPHRFSRTRDLYDDFVQVL 390

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           +  N+     V+ +G   +   D+  L  SI         Y E    L   ++  L  GD
Sbjct: 391 AEANVLLLMEVYPAGEEPVPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 446 VVVVKSSNSCG 456
           +++ + +    
Sbjct: 451 ILLCQGAGDIA 461


>gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
 gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/470 (16%), Positives = 155/470 (32%), Gaps = 63/470 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  I+  S        F A+KG   DGH ++  A  +GA + V+  D+  +  ++  
Sbjct: 24  DIEIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSRGARVFVLQDDIEMADDAIK- 82

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYA 138
               V+D   AL+K++            II +TG+ GKTT    ++  L+          
Sbjct: 83  --IIVEDSRIALSKISANYFGNPSKSLKIIGVTGTKGKTTITNYISEVLNRAGINTGVVG 140

Query: 139 CIGSYNNHIGVPLT-----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             G++ N+I                + R  +D       + +S  G  R     V   +A
Sbjct: 141 TNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVECVSMEVSSGGLQRHRVEHVDFDVA 200

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + T ++P H+        +     KA++F  L K G   +N DD   + +   +      
Sbjct: 201 IFTNLSPDHIGPKEHPTFQNYLECKAKLFT-LAKHG--IINIDDEHAQEIIDIATC---- 253

Query: 246 TIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            I +FG  K AD +    +              + +  +        G     N L  + 
Sbjct: 254 DIETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAGNYYICSPGMFSIYNALAVIA 313

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +            +  G+    ++      +ID  Y  N  S++  +  L 
Sbjct: 314 VCKYLGVKKE---ITREALTEAKVCGRVEVLSVLPYATIIID--YAHNGVSLENILKTLE 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLA 413
               +   R I + G    +G  ++    +L +V S      +  S           +  
Sbjct: 369 H---YDHKRLICLFGS---VGGRTKIRRKELGDVASRECDLSILTSDNPDFEDPLEIIDD 422

Query: 414 LKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVV-----------VVKS 451
           +  +  ++   +  E               +GD++           ++K 
Sbjct: 423 IAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLIKG 472


>gi|319789776|ref|YP_004151409.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
 gi|317114278|gb|ADU96768.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
          Length = 446

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 142/424 (33%), Gaps = 48/424 (11%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F      +  G D ++H     +  V  +   +     L IPV    DV+  + +L   
Sbjct: 48  VFIGHSPENVKGADVVIH-----SSAVKPSNPEIVEAKKLGIPVIPRADVVSDIMRLKEG 102

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IA+ G+ GKTTT  M+   L S   T   I        +    A +     
Sbjct: 103 ---------IAVGGTHGKTTTSSMIATILHSAG-TSPTILVGGRLPFLGGDNAALGSG-K 151

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++       P ++VIT +   HL  +   EEI  A       +   G
Sbjct: 152 WIVIEADESDGTFLKLT-----PTLSVITNVDNDHLDFYGSPEEIDKAFTAFANRVAFYG 206

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +FL  +      +  K +    K   ++G  + ADF   +  Q    S   V+ +GK +
Sbjct: 207 KVFLCIECPRVRKISPKVY----KRKETYGF-EGADFTAEEVTQVGLSSIFTVRYKGKKL 261

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V  +  G H   N L  + +          A +AL  F       +R          T
Sbjct: 262 GKVRLNVPGKHNVLNALGAIAVALETGVPFKEAAEALGQFRNAS---RRMELKGTVKGIT 318

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---- 396
             D+ Y  +P  +KA+   +    P+   RR+ VL         ++    +  E L    
Sbjct: 319 FFDD-YGHHPTEIKASYEAIKSAFPN---RRVVVLFQPHRF-SRTKLLWREFVETLKGFE 373

Query: 397 -----SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 +Y      + G     L           Y+  ++     +   L  GDV +   
Sbjct: 374 NLFLCDIYPAGEEPIEGIDSRKLA----SECKAVYAGGLEEACKLMAKVLRPGDVFLSLG 429

Query: 452 SNSC 455
           + S 
Sbjct: 430 AGSV 433


>gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
 gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 147/401 (36%), Gaps = 39/401 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +    +L IP+    ++LG L K           T IA++G+ GKTTT  M
Sbjct: 77  AAINRNNPELIEAVALKIPMLTRAELLGQLMKNYD--------TPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G  +  I V   L  +  ++  G     ++   E         P 
Sbjct: 129 ISHIL--------LEGDLDPTISVGGILKAIGGNIRVGNSGTFITEACEYTNSFLHFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VI  I   HL  F  +E+I  +  +  E L + GT+ +N +   +  +          
Sbjct: 181 ISVILNIEEDHLDFFKDLEDIRHSFHQFAELLPEDGTLIINAEIKDYAEIYEGLSC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
            + ++G +   D+  +            ++  +G+  + +     G H   N L  + + 
Sbjct: 237 NVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            IL   +D   + L  F    G  +R+         T+ID+ Y  +P  + A +      
Sbjct: 297 DILGLSIDITKRGLLSFT---GTDRRFEYKGEFNGVTVIDD-YAHHPTEILATLKAAQHS 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  E   LS + H+ LA++ +      + +S   +   
Sbjct: 353 LHNSVWCVFQPHTYTRTKAFFHEFAE--ALSHADHLVLADIFAARETDTLGISSADLAKE 410

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + L      HY  +   +  F++ +   GD+++   +   
Sbjct: 411 TEKL--GTDTHYFPSFAQIEAFLKENCRPGDLLITMGAGDV 449


>gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
 gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
          Length = 465

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 159/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARAQRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  +L         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LILAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVW------LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+      ++  +  AL  AL  +  V   + ET+D L   +     DGDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|323144085|ref|ZP_08078727.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
 gi|322416139|gb|EFY06831.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
          Length = 479

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 165/423 (39%), Gaps = 50/423 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV++ +      ++      IPV    ++LG L +          
Sbjct: 69  FIGHRAENIEGASVVVVSSAIHQGNPEVNAAIEKRIPVVRRAEMLGELMRYRYG------ 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +++   +      T+   G  N+      T AR+     + I 
Sbjct: 123 ---IAVAGTHGKTTTTSLISSIFAEAGLDPTFVIGGLLNS----AGTNARLGSS-RYLIA 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P + V+T I   HL  +     ++     E    L   G   
Sbjct: 175 EADESDASFLH-----LQPMMTVVTNIEADHLETYGGDFSKLEDTFIEFLHNLPFYGVAV 229

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD     L  +      + + ++G  + +D Q+  ++Q    S   V  +  S +++
Sbjct: 230 VCNDDPVIRKLMPRI----GRAVVTYGTIEGSDLQVVDYEQKEAGSTFTVLRKNASPLKI 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G HMA+N    + +      D D+  +AL  F     R +RY   ++      + 
Sbjct: 286 ELNLPGIHMAKNAAAAIAVAMEEGIDDDSIKRALKNFAGVGRRFQRYGKLMSPQGIVSLV 345

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P+ ++A I  + +  P+   R + V          ++  + D   VL   +   
Sbjct: 346 DDYGHHPSEVQATIDAVRRGWPN--RRLVMVF--QPHRYTRTRDLYEDFIRVLQQVDELV 401

Query: 401 ISHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +  V+ +G   +   D   L RSI        H++  +  +   +   + + D+V+ + +
Sbjct: 402 LLEVYPAGEDPIQGADGRHLCRSIRAKGKLEPHFARDVAEVPEILDHIVKENDIVLTQGA 461

Query: 453 NSC 455
            + 
Sbjct: 462 GNV 464


>gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
 gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
          Length = 472

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 162/449 (36%), Gaps = 63/449 (14%)

Query: 53  GH--DFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GH  D++      GA  +VV+T        V    SL IPV     +L  L +L      
Sbjct: 56  GHSADYLD-----GADAIVVSTAVSQGNPEVLKARSLHIPVVPRAIMLAELMRLKSG--- 107

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IA+ G+ GKTTT  ++   L++        IG   N  G    L       D+ 
Sbjct: 108 ------IAVAGTHGKTTTTSLVASVLATGGLDPTFVIGGRLNSAGANAKLGTG----DYI 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + E   S    +      + P IA+IT I   H+  +   + ++  A  E  + L   G+
Sbjct: 158 VVEADESDASFLH-----LFPTIAIITNIDSDHMDTYGHDVAKLRGAFVEFAQRLPFYGS 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS 280
             +  DD     +             ++G ++ A F+    +    +   +V  + QGK 
Sbjct: 213 AIICTDDENVRNIMPFISCSST----TYGLNEQAHFRAINIENNGTRMEFDVIRKYQGKE 268

Query: 281 MEVVH---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCA 333
           +  +H   +  G H   N L  + + + +        KALS F+    R  +        
Sbjct: 269 LPQLHISLNIPGQHNVLNALAAIAVGTEVGVADSDIEKALSEFNGVSRRFTQVGDFDVIQ 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N G    + + Y  +P  M A I       P     R  V          ++    D  
Sbjct: 329 NNGGGKFTVIDDYGHHPVEMDATIQAARGAWPT----RRLVFAFQPHRYTRTRDCFEDFV 384

Query: 394 EVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLV 442
            VL   +    S V+ +G   +   D  AL R++ V       + E ++ +   I     
Sbjct: 385 NVLGKADAVILSEVYPAGESPIVAADGRALARALRVAGHVEPIFVEDINDMPKAILKIAK 444

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           DGDVV+   + S    ++ + L E +  I
Sbjct: 445 DGDVVICSGAGSI--SKVPHKLGEAYGQI 471


>gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
 gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
          Length = 467

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 163/427 (38%), Gaps = 53/427 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD   + +         K I  +G + +A  +    +    +     ++     +++V +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDIVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------YRCALNQGFFT 340
             G H  QN L  + I + L        +AL+ F+    R +R      +      G +T
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVFSEGSTNGAYT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +
Sbjct: 334 LVDD-YGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVD 388

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+ 
Sbjct: 389 ALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDVVIT 448

Query: 450 KSSNSCG 456
             + S G
Sbjct: 449 MGAGSIG 455


>gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
 gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
          Length = 544

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 162/473 (34%), Gaps = 59/473 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVAS 77
           +  V G+ + ++ I   + F A+ G    G  F + A+ +GA  ++ +       +    
Sbjct: 49  EVVVKGVDLRAQGIVTDDLFAALPGARTHGAQFAVDALGRGATAILTDEAGLELIEAADK 108

Query: 78  IGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S+PV    +    L +++     R   K  ++ ITG+ GKTTT  +L  A++   +
Sbjct: 109 APDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGR 168

Query: 136 TYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLT 179
               +G+    I      + +                   +D  + E+    L   R   
Sbjct: 169 KPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGR--V 226

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKA 237
             +R  I   T ++  HL      EE   AKA +F+     +     +  DD +   +  
Sbjct: 227 DGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRRMAE 286

Query: 238 KSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQ-LQGKSMEVVHHGIGYHMAQ 294
            +       + +   S   A++ +   +   + S   E+    G+S  V     G +   
Sbjct: 287 LAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRYNVA 346

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N  + L +      D D A++A       +  G+  R    Q F  ++D  Y   PA+++
Sbjct: 347 NAALALTVSFAAGLDPDAAVRA---LGTVDVPGRVQRIDRGQSFLAVVD--YAHKPAALE 401

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A I+ L    P   GR   V+G   +     ++   +            + ++  +    
Sbjct: 402 AVIATLRNQVP---GRVAVVVGAGGDRDAGKRALMGEAG----ARGADLLIVTDDNPRTE 454

Query: 415 KDA------------LPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
             A            +P S      E                 GDVV+V  K 
Sbjct: 455 DPAKIRASVMQGAMDVPESERGEVREVGDRAAAIEQAVRWAQPGDVVLVAGKG 507


>gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162]
          Length = 459

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 134/363 (36%), Gaps = 31/363 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+  T IA+ G+ GKTTT  ML+  L          G  +  I V   L  +  ++  G
Sbjct: 107 MRNYDTSIAVAGTHGKTTTTSMLSHIL--------LKGECDPTISVGGILPAIGGNIRVG 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  ++   E         P + +I  +   HL  F  I++I  +  +  E L   G +
Sbjct: 159 QSETFLTEACEYTNSFLSFFPTLGIILNMDADHLDFFKDIDDIRHSFRKFAELLPADGAL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSME 282
            +N D   +E++           + ++G   +A++                V   G+ + 
Sbjct: 219 IINADTPKYEMVAENLPC----KVITYGLEHDAEYTASDITYDEFGHPTFHVLHNGEDIG 274

Query: 283 -VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L ++    +L  D +      +      G  +R++     G  T+
Sbjct: 275 ICSLKVPGIHNVSNALASIAAGRLLDLDNEVI---FAGLKDFGGTDRRFQYKGKVGEVTI 331

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ID+ Y  +P  ++A +                PH   R  A+L +  +   L+ + H+ L
Sbjct: 332 IDD-YAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRTKALLPEFAK--ALTLADHVVL 388

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           A++ +     ++ +S   +   K          Y  T D +  F+  +   GD+++   +
Sbjct: 389 ADIYAARETDNLGISSADLQ--KQIRELGTPCEYFPTFDEIENFLLENCTQGDLLITMGA 446

Query: 453 NSC 455
              
Sbjct: 447 GDV 449


>gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 508

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 149/415 (35%), Gaps = 44/415 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              Q  +  ++ DS+ +     F   KG  +   +++  AV+ GA   +           
Sbjct: 29  GKEQTTIEQLTFDSKKVTENTLFIC-KGMAFK-EEYLKEAVKNGAVCYISEQKYELDED- 85

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL-----SSI 133
             +P   V D+  A+  LA      +     +I I G+ GK+T+   +   L     ++ 
Sbjct: 86  --VPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKGKSTSVYYMKSILDDYLAANG 143

Query: 134 KKTYACIGSYN---------NHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLT 179
           KK  A I S +         +HI  P  +      R  V+      E+ +S         
Sbjct: 144 KKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVNCGMEFVEMEVSSQALKYGRV 203

Query: 180 HLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           + +   +AV   I   H+S       E+  S+K  IF+   KT T  +N D  F + +  
Sbjct: 204 NEMMFDVAVFLNICEDHISPIEHKDFEDYFSSKLLIFQ---KTKTAVVNLDADFSDRILE 260

Query: 238 KSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  A  + TI +  K++NADF      +  + +   V+      E      G+   +N 
Sbjct: 261 AAQCAPKVVTIST--KNENADFYAYNIHKEGDGTIFNVRCAEFDKEFELTMPGFFNVENA 318

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ + +     V+     L           R   + +     +    Y  N  S +  
Sbjct: 319 LATIAVANQFNIPVEFMYSGLKKARSSG----RMELSTSDDNKIIAVVDYAHNKLSFEKL 374

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            S + +  P  E   I++ G     G+ + +   DL  +   Y    V+L+    
Sbjct: 375 FSSIKEEYPDRE--IISIFGCP---GKKAFTRRRDLGTIAGKY-AKKVYLAAEDP 423


>gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans
           PsJN]
 gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 94/426 (22%), Positives = 158/426 (37%), Gaps = 51/426 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD   + +         K I  +G + +A  +    K    +     ++     +++V +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGFAPDAQVRAVNVKAHDGKMHFTAMREDAAPIDIVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTL 341
             G H  QN L  + I + L        +AL+ F+    R +RY                
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSEGKASGAYT 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  M A +   +       GRR  VL         ++    D  +VLS  + 
Sbjct: 334 LVDDYGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVDA 389

Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450
              + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+  
Sbjct: 390 LVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAVVRDGDVVITM 449

Query: 451 SSNSCG 456
            + S G
Sbjct: 450 GAGSIG 455


>gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
 gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
          Length = 514

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 171/482 (35%), Gaps = 47/482 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL     LL A  G S    P   V+GI+IDSR +   + + A+ G    G  F   A+
Sbjct: 9   RPLSGLASLLGAPSGTS--RAPLAAVSGITIDSRQVQRGDLYVALPGATSHGAGFSAQAL 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGK 119
             GA  ++ + +  A+  +  +PV  V D    L +    V  R  +   +I +TG+ GK
Sbjct: 67  AAGASAILTDEEGRAAAVATGLPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFG 163
           +TT  +L   L +       IG    H G                  L        V   
Sbjct: 127 STTTFLLEAGLRAAGHKAGLIGGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAA 186

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGT 222
             E+    L   R     V   +A+ T ++  HL     +++  + KA +F   + + G 
Sbjct: 187 AMEVSSHALALGR--VDAVFYDVALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAG- 243

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281
             +N DD+    L   S      T +S   +  AD++    +  ++ S   V   G    
Sbjct: 244 -VVNIDDAHGRELLGLSKIPM--TTFSAEGALEADWRAADVRLGADGSSFRVVGPGGVEE 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +      G     N L  +  +      +  A+  +       GR +R      + F  +
Sbjct: 301 DATVALPGPFNVANALGAIVSLVEAGVPLRAAVAGVGTLAGVPGRMER--VPGGEDFQAI 358

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y+  P ++++ +  L +++    GR   VLG   +     +    + A  L+   I
Sbjct: 359 VD--YSHKPGAVESVLRSLREVTT---GRLTVVLGCGGDRDRGKRPMMGEAAARLADVAI 413

Query: 402 ---------SHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
                      + +    +  AL  +     HV              S    GDVVVV  
Sbjct: 414 LTSDNPRSEDPLRILAEMMNGALGVSHDERAHVIIEPDRAAAIDLAISRAGFGDVVVVAG 473

Query: 450 KS 451
           K 
Sbjct: 474 KG 475


>gi|83858914|ref|ZP_00952436.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853737|gb|EAP91589.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 467

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 153/425 (36%), Gaps = 54/425 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSK 107
            I HA +   GAG +VV++ +      L        PV    ++L  L +L  A      
Sbjct: 59  HIGHAAENVEGAGALVVSSAVKKDNPELVAARAKRTPVVRRAEMLAELMRLKHA------ 112

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  ++   + +       I   N  I           + ++ + E 
Sbjct: 113 ---VAVAGTHGKTTTTSLVACLMDAAGFDPTVI---NGGIISAYGSNAKIGEGEWMVVEA 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++         + +IT I P H+ ++   + +  A A+  E L   G   L  
Sbjct: 167 DESDGSFLKLRGS-----VGIITNIDPEHMEHYGSFDALRDAFAQFVENLPFYGFAVLCI 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--- 284
           D    + L A+      + + ++G S  AD +L            ++  Q + +E V   
Sbjct: 222 DHPEVQALAARIE---DRRVITYGFSPQADVRLSNLVMDETGGHFDLTFQPRGIEPVTWA 278

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N    L +V  L    + A  ALS F   +   +R+         T+
Sbjct: 279 GMSLPMMGEHNVLNAAGALAVVQALGGGEEEARTALSGFTGVK---RRFTITGQAHGVTV 335

Query: 342 IDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           +D+ Y  +P  + A +    Q          + PH   R   +  D C     + S    
Sbjct: 336 VDD-YGHHPVEITAVLKAARQRVGAGRVHAVVQPHRYSRLHDLFEDFCTCFNDADS---- 390

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK 450
              V  +Y      + G    +L   L R  H +  + T + L   ++S +  GD++V  
Sbjct: 391 -VWVTPVYAAGEAPIEGASQDSLVAGLQRHGHRNPNATTRETLPDDLKSVMQPGDLIVCL 449

Query: 451 SSNSC 455
            +   
Sbjct: 450 GAGDI 454


>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
 gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
          Length = 493

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 166/479 (34%), Gaps = 52/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + I+   +    +  V  I  DSR IAP+  F  + G   DGH +I  AV+K 
Sbjct: 1   MKLSKICEEIEYTLLQGSLETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVEKE 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A ++V+  +  A+    +I V  V+   +  AL   A+      K   I +TG+ GKTTT
Sbjct: 61  ASVIVLEKEEEAAQIPENITVLKVESARLALALMSAALFDHPARKLVTIGLTGTKGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFE 166
             M+   L    K    IG+    I                L RM         ++ + E
Sbjct: 121 TYMIKKVLEMAGKKVGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAMVEAGCEYVVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   R  T  +     + T ++P H+     +  EE    K+ +F          
Sbjct: 181 VSSQGLKLDR--TAGILFDYGIFTNLSPDHIGPAEHASFEEYMECKSLLFRQCR---IGI 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SM 281
           +N DD   + +  K H   +K   +F   + AD         +E   + +          
Sbjct: 236 VNADDEHVDGIL-KGHTCEVK---TFSAEREADLMASDIGFINEDGKLGMHFNVTGCMDC 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +   H  G     N ++T+ +  +     +  ++ LS    K     R         +TL
Sbjct: 292 QAKVHIPGRFSVYNSMVTMLVCHLAGISDEAILEGLSKVQVKG----RVEMLPVSKDYTL 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  N  S ++ ++ L +  P    R I V G     G  S+    D+ EV      
Sbjct: 348 IID-YAHNEVSTRSVLTTLMEYHPK---RLICVYGG---GGNRSKLRRYDMGEVTGEMAD 400

Query: 402 SHVWLS----GFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             V          +  + +         +      +       +   +   GD++V+  
Sbjct: 401 LCVLTCDNPRDEEIRDINNDIKVGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLG 459


>gi|189029215|sp|A5CD22|MURC_ORITB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 490

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 157/421 (37%), Gaps = 56/421 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GAG+VV+++ +  +           IP+    ++L  L +  VA         IAI+GS
Sbjct: 71  NGAGIVVISSAIKHNNPEYQAAILAKIPIISRAEMLAELMRSKVA---------IAISGS 121

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ++     +     T    G  NN             D D+ I E   S    
Sbjct: 122 HGKTTTTALIACIFEACGLHPTVITGGIMNNR-----ATNAYLGDGDYFIAEADESDATF 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I+     +   IAVIT I   HL  +   + + SA  +    L   G      DD   + 
Sbjct: 177 IK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQN 231

Query: 235 LKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHH 286
           L AK   +  + I ++G  SKNA  Q       +  S  +V+++  +        +V   
Sbjct: 232 LIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + I   L  D++        F   +G  +R+         T+ID+ Y
Sbjct: 289 ALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISH 403
             +PA + A I     I+   +GR IAV           +    +     + +    IS 
Sbjct: 345 AHHPAEIIATIDTARCIADKQQGRVIAVF--QPHRYSRLKQLFSEFTHCFQRVDQLYISQ 402

Query: 404 VWLSGFHV------LALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++ +G         ++L +A+    H  Y      +D L   I   +   D++++  +  
Sbjct: 403 IYDAGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYRQVKPCDIILLMGAGD 462

Query: 455 C 455
            
Sbjct: 463 I 463


>gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis EO147]
          Length = 514

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 154/459 (33%), Gaps = 46/459 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   +AF A      D   FI  A+ +GA  V+   +  A+ G        V
Sbjct: 30  QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVLYQPEGSAADGLEPATSLAV 89

Query: 89  D--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L                  + +TG+ GKT+  + +  AL+++ +  A IG+  + 
Sbjct: 90  PALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVIGTLGSG 149

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     +AV T
Sbjct: 150 MPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGR--VNGTAFDVAVFT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E   +AK ++F          +N DD     L A     G     ++
Sbjct: 208 NLTQDHLDYHRTLEAYEAAKTKLFAW-RGLRLAVVNRDDPAGRRLLANLA--GRVRTIAY 264

Query: 251 GKSK-----NAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           G        +AD      K +  +  +   +       +V    +G     N+L  LG +
Sbjct: 265 GIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVLGTL 324

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+ A+       GR +R      Q    L+   Y   P +++  +  L  I
Sbjct: 325 LAADVPFDAALAAIEKLESVNGRMERL-GGRLQNDEPLVVVDYAHTPDALEKTLDALRPI 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    G  + + G   +     +     +AE L+      V ++  +  +         +
Sbjct: 384 ARARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DKVVVTSDNPRSEDPQKIIDQI 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  +      E      L         DVV++  K 
Sbjct: 440 AAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|148284352|ref|YP_001248442.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Boryong]
 gi|146739791|emb|CAM79666.1| UDP-N-acetylmuramate--alanine ligase [Orientia tsutsugamushi str.
           Boryong]
          Length = 502

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 157/421 (37%), Gaps = 56/421 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GAG+VV+++ +  +           IP+    ++L  L +  VA         IAI+GS
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAILAKIPIISRAEMLAELMRSKVA---------IAISGS 133

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ++     +     T    G  NN             D D+ I E   S    
Sbjct: 134 HGKTTTTALIACIFEACGLHPTVITGGIMNNR-----ATNAYLGDGDYFIAEADESDATF 188

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I+     +   IAVIT I   HL  +   + + SA  +    L   G      DD   + 
Sbjct: 189 IK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQN 243

Query: 235 LKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHH 286
           L AK   +  + I ++G  SKNA  Q       +  S  +V+++  +        +V   
Sbjct: 244 LIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTLP 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + I   L  D++        F   +G  +R+         T+ID+ Y
Sbjct: 301 ALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD-Y 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISH 403
             +PA + A I     I+   +GR IAV           +    +     + +    IS 
Sbjct: 357 AHHPAEIIATIDTARCIADKQQGRVIAVF--QPHRYSRLKQLFSEFTHCFQRVDQLYISQ 414

Query: 404 VWLSGFHV------LALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++ +G         ++L +A+    H  Y      +D L   I   +   D++++  +  
Sbjct: 415 IYDAGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYRQVKPCDIILLMGAGD 474

Query: 455 C 455
            
Sbjct: 475 I 475


>gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae
           WPP163]
          Length = 495

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 169/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             +V   +   + G++     +PV  + ++   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAIVAEAEGETADGTVREMHGVPVIYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L     ++ +T A +G+  N +                + +             
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F    + G + +
Sbjct: 181 AMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAE-HRVGQMII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +    +            +  +       + +         E
Sbjct: 240 NADDEVGLRWLAKLPD-AVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     NML+ L  +  L   +D  + A S   P  G   R      +G  T++
Sbjct: 299 IESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCG---RMEVFHAEGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE L+     
Sbjct: 356 VD-YAHTPDALEKALEA---ARLHCLGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L  +  V                  + DVV++  K 
Sbjct: 408 RVVVTDDNPRSEEPQAIVTDILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKG 467


>gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis C6786]
          Length = 514

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 153/459 (33%), Gaps = 46/459 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+RS+   +AF A      D   FI  A+ +GA  V+   +  A+ G        V
Sbjct: 30  QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVLYQPEGFAADGLEPATSLAV 89

Query: 89  D--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L                  + +TG+ GKT+  + +  AL+++ +  A IG+  + 
Sbjct: 90  PALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVIGTLGSG 149

Query: 147 IGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVIT 190
           +   L               +LA++       +  E+    L + R   +     +AV T
Sbjct: 150 MPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGR--VNGTAFDVAVFT 207

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E   +AK ++F          +N DD     L A     G     ++
Sbjct: 208 NLTQDHLDYHRTLEAYEAAKTKLFAW-RGLRLAVVNRDDPAGRRLLANLA--GRVRTIAY 264

Query: 251 GKSK-----NAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           G        +AD      K +  +  +   +       +V    +G     N+L  LG +
Sbjct: 265 GIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVLGTL 324

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D A+  +       GR +R      Q    L+   Y   P +++  +  L  I
Sbjct: 325 LAADVPFDAALAEIENLESVNGRMERL-GGRLQNDEPLVVVDYAHTPDALEKTLDALRPI 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    G  + + G   +     +     +AE L+      V ++  +  +         +
Sbjct: 384 ARARGGELVCMFGCGGDRDATKRPLMGAIAERLA----DKVVVTSDNPRSEDPQKIIDQI 439

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  +      E      L         DVV++  K 
Sbjct: 440 AAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 528

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/465 (20%), Positives = 151/465 (32%), Gaps = 48/465 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--L 81
              + G+S+DS   AP E F  + G    G  F   AV  GA  V+ ++D    +     
Sbjct: 44  DLSILGVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDSDGAQIVHESAP 103

Query: 82  SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             PV    D    +  L               A+TG+ GKTTT   L   LS+       
Sbjct: 104 GTPVLVHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGGCMV 163

Query: 140 IGSYNNHIGVP-----------LTLARMPV----DVDFGIFELGMSHLGEIRFLTHLVRP 184
            G+    +G               L RM      D          SH   +  L  +V  
Sbjct: 164 AGTVELRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGIVV- 222

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL     +E    AKA +F   E      +  DD +   L A +  + I
Sbjct: 223 DVAGFTNLQRDHLDFHKTMEGYLEAKARLFTP-EHARRGVVCVDDQWGAALAADAP-IEI 280

Query: 245 KTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + ++     AD+ +           +   +    G+ +E      G    QN  + L 
Sbjct: 281 DRVRAYPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALV 340

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +         TA  AL+  H   GR +R      +    ++D  +   P +M+ A+  + 
Sbjct: 341 MAIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPEAMELALKAVR 398

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDA 417
            I+P   GR I V G     G+  Q     L +V +      V             ++DA
Sbjct: 399 PITP---GRLIVVFGS---DGDRDQGKRPMLGQVCARLADVLVITDENPRSEDPQLIRDA 452

Query: 418 LPRSIHVHYSETMD---------GLFLFIQSSLVDGDVVVV--KS 451
           +   +     +  D                      D V+V  K 
Sbjct: 453 ILDGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTGKG 497


>gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
 gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
          Length = 495

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 171/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A  G +     +PV  +  +   L+ L      +   +  ++ +TG+ GK
Sbjct: 61  AAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + ++      + E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATAVNYHDSGATIQFDSSWGNGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  GR + +    +      +
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF----SAPGKPAV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALQA---ARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +   +++ M+G    + +++    + DVV+V  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 477

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 132/398 (33%), Gaps = 45/398 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  ++   LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFR---------HGIAVAGTHGKTTTTSLIAAVLSEGG- 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                      +      A++     + + E   S    +R     + P +AV+T I   
Sbjct: 142 -LDPTFVIGGQLLAAGANAKLGAG-QWLVVEADESDGSFLR-----LNPLVAVVTNIDAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL N+      I  A  E  + L   G   L  DD     L  K+     + + ++G   
Sbjct: 195 HLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELVGKAR----RHVMTYGIDA 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD +     Q   +    + L  GK + V     G H   N L    +   L    +  
Sbjct: 251 AADVRAEDVVQDGARMCFTLCLPEGKVIPVTLALPGRHNVLNALAASAVGWQLGVPPEVI 310

Query: 314 IKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +AL  F    G G+R+      A+  G    + + Y  +P  ++A   V +        
Sbjct: 311 GRALKSFV---GIGRRFNDLGDVAIGNGACVRLIDDYGHHPRELEA---VFAAARGGWPD 364

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPR 420
           +R+ V             F    A VLS         +Y    V + G    AL  A+  
Sbjct: 365 KRLVVAFQPHRYSRTRDQF-DAFAAVLSSVDALVLSEVYPAGEVPIPGADAKALARAIRA 423

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                      +  L   +   L +GD++++  +   G
Sbjct: 424 RGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGAGDIG 461


>gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM
           12804]
 gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii]
          Length = 468

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 158/431 (36%), Gaps = 57/431 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GAG +V +T +      +       IPV     +L  L +L        
Sbjct: 56  GH---TAANVAGAGAIVTSTAVAGDNPEVIAARAAGIPVVPRAIMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L++        G  +    +   L     +   G  E
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAA--------GDLDPTFVIGGRLTSAGANARLGQGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
             +    E       + P +A++T I   H+  +   +  + SA  E  + L   G+  L
Sbjct: 156 YIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----- 280
             DD+    +         + I ++G S +A  +    +    +    VQ Q ++     
Sbjct: 216 CADDANVREIM----PFVSRPITTYGLSPDAHVRGENVQADGTRMRFTVQRQDRATALPP 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALN 335
           + +  +  G H  +N L  + + + L    +   +AL+ F     R           A  
Sbjct: 272 LAIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASFKGVGRRFTQTGEFPVPAAHG 331

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTLID+ Y  +P  M A +   +        RRI VL         ++    D   V
Sbjct: 332 GGTFTLIDD-YGHHPVEMAATL---AAARGAWPDRRI-VLAFQPHRYTRTRDCFEDFVRV 386

Query: 396 LSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   +    + V+ +G   L   D  AL R++ V       + E +  L   +   + DG
Sbjct: 387 LGGADAVLLTEVYAAGEPPLVAADGRALARALRVAGRIEPVFVEDVADLPQAVLDFVRDG 446

Query: 445 DVVVVKSSNSC 455
           DVVVV  + S 
Sbjct: 447 DVVVVMGAGSI 457


>gi|312898960|ref|ZP_07758348.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
 gi|310620122|gb|EFQ03694.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
          Length = 462

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 149/429 (34%), Gaps = 49/429 (11%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-----------NKLAVAARLRSKATI 110
           Q+GA + +           + I    + D    L           ++      + +    
Sbjct: 50  QRGARICIGQKAENLGDAQVVIISSAIRDTNEELEAARKRQLPIIHRADALVHIMTYGKA 109

Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTTT  ML      S +  T   IG   +++     L +          E  
Sbjct: 110 IAVAGAHGKTTTTSMLGQVFYESKMDPTL-VIGGEVDYLQGNSVLGKG---------EYV 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNY 227
           ++   E         PHIAV+T I   H+ ++  IE +  A  +    L+  TG   L  
Sbjct: 160 IAEADESDGTFLKEHPHIAVVTNIDADHMDHYGTIENVIQAFKDFIHLLDPQTGLAVLCA 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
           D+        +      +   ++     AD++ +       +   +V    + +  V  +
Sbjct: 220 DNDKIRAFLPEVK----RPFVTYAIEAPADYKAKNIGYHEGKLIFDVYKHDEFLGSVELN 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L T+ +        +    ALS FH   G  +R++   +     ++D+ Y
Sbjct: 276 VPGNHNVLNALATVAVSLSCGISFEDIAAALSRFH---GAKRRFQTKGHVNGIWVVDD-Y 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-------ELSQSF-HIDLAEVLSL 398
             +P  + A ++    +  H    R+  L              E S++F   D   +  +
Sbjct: 332 AHHPTEIHATLAAARSMGTH----RVVCLFQPHRYTRTQLLAEEFSKAFTCADKLILTDV 387

Query: 399 YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     + G     L D +       V Y  T + L  +++ +    D+++   +    
Sbjct: 388 YSAGEDPIPGIGGTFLTDKVKSATGQDVEYIGTKEELLEYLRKNARPRDLILTMGAGDI- 446

Query: 457 FYRLINLLL 465
            Y++    +
Sbjct: 447 -YKVGEAFV 454


>gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 486

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 151/422 (35%), Gaps = 43/422 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+LG L +          +T + I G+ GKT+T  M
Sbjct: 86  AAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+ +           +    +   L +   +   G  E+ ++   E        +P+
Sbjct: 137 SVVAMQAAG--------MDPSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPN 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T + P HL  F   E       +    +   G + +  +D     L  +S   GIK
Sbjct: 189 VAVVTNVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 246 TIYSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           T+  +G +          A   +   +  +E +   + + G+ + V+    G HM  N  
Sbjct: 249 TV-GYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGA 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAA 356
             L    ++  DVD  ++ LS F     R + +       F    I + Y  +P  + A 
Sbjct: 308 AALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAV 367

Query: 357 ISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +S    ++   G+GR I        +   +  F  + AE         VL +Y      +
Sbjct: 368 LSAARTRVKAAGKGRVIVAF--QPHLYSRTIEFQKEFAEALSLADAAVVLEIYGAREQPV 425

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            G     + DA+  +I V Y      +   I       D+V+   + S       +++ L
Sbjct: 426 DGVSSEIITDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQL 483

Query: 465 LE 466
             
Sbjct: 484 QN 485


>gi|323137892|ref|ZP_08072967.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396895|gb|EFX99421.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 469

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 151/428 (35%), Gaps = 54/428 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           + GHD    A   G   VVV       +   +A+     +PV    ++L  L +L     
Sbjct: 56  FIGHD----AKNLGDAAVVVVSTAIKRDNPELAAAREKRLPVVRRAEMLAELMRL----- 106

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                  +AI G+ GKTTT  ++   L +       I      I    T AR+    ++ 
Sbjct: 107 ----KQCVAIAGTHGKTTTTSLVATLLDAGGLDPTVIN--GGIINAYGTNARLGAG-EWM 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    ++     +   +A++T I P HL +F   + I  A     E L   G  
Sbjct: 160 VVEADESDGTFLK-----LPADVAIVTNIDPEHLDHFHTFDAIKEAFRNFIENLPFYGFA 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  D    + L  +      + + ++G++  AD +L         S   V L+ +    
Sbjct: 215 VMCLDHPTVQELVGRIE---DRRVITYGENPQADVRLLDVNLEGGVSRFNVLLRDRKTAQ 271

Query: 284 -------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                  V    G+H A N    + +   L    D   KAL+ F   + R  R       
Sbjct: 272 ATYLENLVLPMPGHHNALNATAAITVAYQLGLSPDQIRKALAGFGGVKRRFTR----TGD 327

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGE----LSQSFH- 389
                + + Y  +P  + A   VL       +G+ +AV+       +       S  F+ 
Sbjct: 328 WNGVQVFDDYGHHPVEIAA---VLRAARASTKGKVVAVMQPHRFTRLQSLFDGFSTCFND 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
            D+  +  +Y      + G    AL +A+    H       + + L   ++  +  GD V
Sbjct: 385 ADVVIIADVYPAGEQPIQGVDRDALVNAIRAHGHRRAVGLPSPEVLPAMVREIVAPGDYV 444

Query: 448 VVKSSNSC 455
           V   + + 
Sbjct: 445 VCLGAGNI 452


>gi|331083260|ref|ZP_08332373.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404341|gb|EGG83886.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 154/400 (38%), Gaps = 43/400 (10%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                IP+    ++LG + K     RL      IA+ G+ GKTTT  M++  L       
Sbjct: 89  AKEKGIPMITRAELLGQIMK---NYRLP-----IAVAGTHGKTTTTSMISHVL------- 133

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                 +  I V   L  +  ++  G  E  ++   E         P I++I  I   HL
Sbjct: 134 -LEAEADPTISVGGILPAIHGNIRVGNSETFITEACEYTNSFLSFFPKISIILNIDADHL 192

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  +++I  +     E L   GT+ +N D    E +  K        + ++G  K AD
Sbjct: 193 DFFKDLDDIRHSFRLFAEKLPADGTLIINGDIPNVEEITDKLPC----EVITYGLEKAAD 248

Query: 258 FQLRKWKQC-SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +         +  +  +   +G+ +        G H   N L  + +   +  D+DT  +
Sbjct: 249 YTAANITFDETAHASFDCLHKGQCIGRFSLAVPGLHNVSNALSAIALGEKVGFDLDTVRR 308

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPH 366
            +  F    G  +R++        T+ID+ Y  +P  + A +   +            PH
Sbjct: 309 GILHFG---GTDRRFQYKGKVAGVTIIDD-YAHHPTEIAATLKTAANYPHKTTWCVFQPH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVH 425
              R  A++ +  ++  L+ +  + LA++ +     ++   G     L D +  R    +
Sbjct: 365 TYTRTKALMDEFADV--LATAERVILADIYAARETDNL---GVSSSDLCDKINERGGKAY 419

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           Y  T D +  F+  + ++GDV++   +     Y++   +L
Sbjct: 420 YFPTFDEIEAFLLENCINGDVLITMGAGDV--YKIGESIL 457


>gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
 gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 157/431 (36%), Gaps = 55/431 (12%)

Query: 63  KGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VVV++ +        +  +  IPV    ++L  L +             IA+ G+
Sbjct: 77  QGASVVVVSSAIPENNVEIVAARAARIPVIRRAEMLAELMRYR---------HGIAVAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+    +            N  +     +        + I E   S    + 
Sbjct: 128 HGKTTTTAMVASIYADAGLD---PTFVNGGLVKAAGVHARLGCSRYLIAEADESDASFLH 184

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +A++T I   H+       E +          L   G   +  DD+    +
Sbjct: 185 -----LQPMVAIVTNIEADHMDTYQGNFENLKQTFINFLHHLPFYGRAVMCIDDARIREI 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQ 294
             +      + I ++G S +AD Q++ ++Q   Q    +   GK  ++V+ +  G H A 
Sbjct: 240 LPRI----GRHITTYGFSDDADIQIKDYQQQQAQGCFTLCRPGKTELKVMLNAPGCHNAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKE------GRGKRYRCALNQGFFTLIDESYNA 348
           N    + + +      D  + AL+ F          G     +    +G   L+D+ Y  
Sbjct: 296 NAAAAIAVATEERISDDCILTALANFQGTGRRFDFLGHFSLEKVNGKKGSVMLVDD-YGH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VW 405
           +P  +   I       P    R + +          +   + D A+VL+  ++     V+
Sbjct: 355 HPTEVAVTIKAARAGWPEK--RIVMIF--QPHRYSRTHDLYDDFAKVLAEVDVLLMLNVY 410

Query: 406 LSGFHVLALKDA--LPRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +G   +   D+  L R+I V         +    + L   +   L D D+V+++ + + 
Sbjct: 411 AAGEKPIPGADSRSLCRTIRVRNPDQLEPIFISDNEALLDILAKQLNDNDLVLIQGAGNI 470

Query: 456 GFYRLINLLLE 466
           G  ++   L E
Sbjct: 471 G--KIARHLAE 479


>gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 495

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/467 (18%), Positives = 171/467 (36%), Gaps = 51/467 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P+  +  +++DSR  A  + F AIKG   DG  +I  A+ +G   V+      A  G+
Sbjct: 16  DAPECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGVAAVIAEAQGEADSGT 75

Query: 81  LS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  V D+   L++L          +  +I +TG+ GKTTT ++L      + 
Sbjct: 76  VQVIHGVPVVYVSDLNNKLSQLAGQFYHHPGGQLRLIGVTGTNGKTTTTQLLAQWAHGLG 135

Query: 135 KTYACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFL 178
           +  A +G+  N                + + L L ++      F   E+    L + R  
Sbjct: 136 EISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFAAMEVSSHGLVQGR-- 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +AV T ++  HL     +E   +AK  +F          +N DD   +   ++
Sbjct: 194 VAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSS-HNVKQQIINADDDVGQKWLSR 252

Query: 239 -SHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              A+ +       ++         + K   +   +  +       +    +G     N+
Sbjct: 253 LPQAVAVTMENRLPENWQGRWLSASEIKYHDKGVSVTFESSWGGGTIDSPLMGAFNVSNL 312

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ L  +  L   +   ++  S   P  GR + +    N      +   Y   P +++ A
Sbjct: 313 LLALSTLLALGYPLKKLLETASCLEPVCGRMEVF----NAPDKPTVVVDYAHTPDALEKA 368

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK- 415
              L     H +GR   V G   +  +  +S    +AE  +     +V  +  +  + + 
Sbjct: 369 ---LLAARLHCKGRLWCVFGCGGDRDKGKRSLMGSVAEQWA----DYVITTDDNPRSEEP 421

Query: 416 DALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVV--KS 451
            A+   I   + +          ++ +   I  +    DVV+V  K 
Sbjct: 422 QAIVDDILTGFIDPGRAIVIHGRVEAVTSAIMQA-KQDDVVLVAGKG 467


>gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
 gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
          Length = 495

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter turicensis z3032]
 gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 501

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 174/482 (36%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 11  NLRDLL----APWVAGLPARALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 66

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             +V      A+ G +     +PV  +  +   L+ L          +  +I +TG+ GK
Sbjct: 67  AAIVAEAKGEATDGEVREIHGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIGVTGTNGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----VDVDF----------GIF 165
           TTT +++      + +T A +G+  N +   ++         VDV             + 
Sbjct: 127 TTTTQLIAQWCQRLGETSAVMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLAAQGATVA 186

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++    V T ++  HL     +E   +AK  +F      G   +
Sbjct: 187 AMEVSSHGLVQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFSA-HHYGQAVI 245

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S   + N D      +    +     + +        
Sbjct: 246 NADDEVGRRWLAK---LPDAVAVSMENNINPDCHGRWLRADAVEYHDRGATLRFSSSWGD 302

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L+ LG +  L   +   +++     P  G   R       G  T
Sbjct: 303 GEIESRLMGAFNVSNLLLALGTLLALDYPLAALLESAPRLQPVNG---RMEVFSAPGKPT 359

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 360 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFA--- 412

Query: 401 ISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV-- 449
              V ++  +         + D L   +    +  ++G    + +++    + DVV++  
Sbjct: 413 -DVVVVTDDNPRTEDPRAIIADILTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAG 471

Query: 450 KS 451
           K 
Sbjct: 472 KG 473


>gi|260589032|ref|ZP_05854945.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
 gi|260540811|gb|EEX21380.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
          Length = 474

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 154/400 (38%), Gaps = 43/400 (10%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                IP+    ++LG + K     RL      IA+ G+ GKTTT  M++  L       
Sbjct: 104 AKEKGIPMITRAELLGQIMK---NYRLP-----IAVAGTHGKTTTTSMISHVL------- 148

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                 +  I V   L  +  ++  G  E  ++   E         P I++I  I   HL
Sbjct: 149 -LEAEADPTISVGGILPAIHGNIRVGNSETFITEACEYTNSFLSFFPKISIILNIDADHL 207

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  +++I  +     E L   GT+ +N D    E +  K        + ++G  K AD
Sbjct: 208 DFFKDLDDIRHSFRLFAEKLPADGTLIINGDIPNVEEITDKLPC----EVITYGLEKAAD 263

Query: 258 FQLRKWKQC-SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +         +  +  +   +G+ +        G H   N L  + +   +  D+DT  +
Sbjct: 264 YTAANITFDETAHASFDCLHKGQCIGRFSLAVPGLHNVSNALSAIALGEKVGFDLDTVRR 323

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPH 366
            +  F    G  +R++        T+ID+ Y  +P  + A +   +            PH
Sbjct: 324 GILHFG---GTDRRFQYKGKVAGVTIIDD-YAHHPTEIAATLKTAANYPHKTTWCVFQPH 379

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVH 425
              R  A++ +  ++  L+ +  + LA++ +     ++   G     L D +  R    +
Sbjct: 380 TYTRTKALMDEFADV--LATAERVILADIYAARETDNL---GVSSSDLCDKINERGGKAY 434

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           Y  T D +  F+  + ++GDV++   +     Y++   +L
Sbjct: 435 YFPTFDEIEAFLLENCINGDVLITMGAGDV--YKIGESIL 472


>gi|237654083|ref|YP_002890397.1| UDP-N-acetylmuramate--L-alanine ligase [Thauera sp. MZ1T]
 gi|237625330|gb|ACR02020.1| UDP-N-acetylmuramate/alanine ligase [Thauera sp. MZ1T]
          Length = 471

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/412 (21%), Positives = 152/412 (36%), Gaps = 48/412 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV     +L  L +             IAI G+ GKTTT  ++
Sbjct: 73  AVKADNPEVVAARERHIPVVPRAQMLAELMRF---------KHGIAIAGTHGKTTTTSLV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+         G  +    +   L     +   G  +  ++   E      L+ P I
Sbjct: 124 ASILAE--------GGIDPTFVIGGRLNAAGANARLGTGDYLVAEADESDASFLLLNPVI 175

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +V+T I   H+  +      +  A  +    L   G   L  DD     +  +      K
Sbjct: 176 SVVTNIDADHMDTYGHDFGRVKQAFVDFLHRLPFYGVAVLCEDDPNVREIIPQVA----K 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKS--MEVVHHGIGYHMAQNMLMTLGI 302
            I  +G S+ A+ +    +    +   + V++ G +  + +  +  G H   N L  + +
Sbjct: 232 QIVRYGFSETANIRAENVRAEGGRMRFDCVRVNGTTSRLSIELNLPGLHNVLNALAAIAV 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQGFFTLIDESYNANPASMKA 355
            + +       +KAL+ F+    R +RY       +     G FTL+D+ Y  +P  M A
Sbjct: 292 ATEVQVPDAAIVKALAEFNGVGRRFQRYGEVALHDQDGDEAGRFTLVDD-YGHHPVEMAA 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL 412
            I   +       GRR  VL         ++    D  +VLS  +    + V+ +G   +
Sbjct: 351 TI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLSTVDALLLAEVYAAGETPI 406

Query: 413 ALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              D   L R+I V       + E +  +   I S+  DGDVV+   + S G
Sbjct: 407 VAADGRSLARAIRVAGTVEPVFVEEIADMPRMILSAARDGDVVITMGAGSIG 458


>gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
 gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82]
 gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
          Length = 495

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 164/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 468

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 161/475 (33%), Gaps = 56/475 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I       + GIS D+R +     F   KG  YDG  F+  A+ KGA +V+ +  +    
Sbjct: 7   IDCEDARILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGA-VVLCDQMLPMQH 65

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              +  V  +   L  L        L ++  +I ITG+ GKT+   +++  L        
Sbjct: 66  VYYTPHVERITQALLEL----YYGDLCTRLHVIGITGTNGKTSVASIISQLLKMEGCRVL 121

Query: 139 CIGS-----------YNNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLV 182
            IG+            +N       LA          +   + E+    + + R     +
Sbjct: 122 QIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAIDQNRI--SFL 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V T I   HL            K ++   L+  GTI  N D S+ + L      L
Sbjct: 180 HFDDIVYTNITQDHLDYHLTRVHYRYTKFKLRRYLKPQGTIVYNSDLSYMQELV----NL 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S G  + A F L   +         +Q      +     +G     N+   + +
Sbjct: 236 AQHACISIGM-QAAHFPLHHVELSDHDLSFRLQ----GYDFHARLLGMVNVYNLAEAIVV 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L    +   K      P  GR +        G FT+  + Y    A+++  +   + 
Sbjct: 291 VHRLGFSYERLRKDCEKLLPVSGRMEVMEV----GGFTIWID-YAHTAAAVEELLVFANS 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHV-LALKDA 417
           +    +GR + +LG     GE  ++    +A + + Y+   V+ S    G  V   L D 
Sbjct: 346 VK---KGRILTILGC---GGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRILADM 399

Query: 418 LPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEFP 469
              S  +    E              + D++++  K S        I    +E+P
Sbjct: 400 KCESFPNAAVFENRYFAIKHTIKVAQNSDIIIIAGKGS-----EETITAFGQEYP 449


>gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 43/421 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI-----PVFGVDDVLGA------LNKLAVAARLRS 106
                KGA + + +T        L +     P   V+ +         L++  + ARL +
Sbjct: 45  EKLAAKGAKIYIGHTAEHVHGADLVVYSTALPQDNVERLEAQEQGIPVLHRSQMLARLLN 104

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   +A+ G+ GKTTT  M+ +A+         I      I    T A+        + E
Sbjct: 105 ERNGVAVAGAHGKTTTSSMIALAMELCGTDPTYI--IGGEIMDMGTNAKAGQG-KCVVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +++      P + V+T I   HL N+      +  A  +    ++  G   +
Sbjct: 162 ADESDGSFLQY-----YPSLGVVTNIEADHLENYGGDFNRLKEAYVQFLNQIKPDGKAVV 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD     L  +  +       ++G   N D+  R+ +        ++    + +  V 
Sbjct: 217 CGDDPNIRELLPRVQS----PTITYGIETNCDYTAREIELGDRCVTFKMYQGDRELGTVE 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N + T+ +        D  +KAL  FH   G  +R++    +    +ID+
Sbjct: 273 LSVPGRHNVYNAMATVIVCMEAGIPFDEVVKALRHFH---GAKRRFQVLGEKNGILIIDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSF-HIDLAEVLS 397
            Y  +P  ++A I+           R IAV            +   S++F   D   +  
Sbjct: 330 -YAHHPTEIQATIAAAKAT----GKRIIAVFQPQRYTRTFFLLDAFSRAFGDADEVIITD 384

Query: 398 LY-NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +Y       + G     L + + ++ +    Y  T   +   +Q  L  GD+V+   +  
Sbjct: 385 IYSPAGEKAIEGVSSSKLVELIKQNSNPGARYLPTKQDVIADLQHRLKPGDLVLTMGAGD 444

Query: 455 C 455
            
Sbjct: 445 I 445


>gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           R]
 gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum]
 gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 151/422 (35%), Gaps = 43/422 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+LG L +          +T + I G+ GKT+T  M
Sbjct: 86  AAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+ +           +    +   L +   +   G  E+ ++   E        +P+
Sbjct: 137 SVVAMQAAG--------MDPSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPN 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T + P HL  F   E       +    +   G + +  +D     L  +S   GIK
Sbjct: 189 VAVVTNVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 246 TIYSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           T+  +G +          A   +   +  +E +   + + G+ + V+    G HM  N  
Sbjct: 249 TV-GYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGA 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAA 356
             L    ++  DVD  ++ LS F     R + +       F    I + Y  +P  + A 
Sbjct: 308 AALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAV 367

Query: 357 ISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +S    ++   G+GR I        +   +  F  + AE         VL +Y      +
Sbjct: 368 LSAARTRVKAAGKGRVIVAF--QPHLYSRTMEFQKEFAEALSLADAAVVLEIYGAREQPV 425

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            G     + DA+  +I V Y      +   I       D+V+   + S       +++ L
Sbjct: 426 DGVSSEIITDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQL 483

Query: 465 LE 466
             
Sbjct: 484 QN 485


>gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
 gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 146/402 (36%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IP+    ++LG L K           T IA++G+ GKTTT  M
Sbjct: 77  AAINKSNPELMEAVGKKIPMLTRAELLGQLMKNYD--------TPIAVSGTHGKTTTTSM 128

Query: 126 LTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  L ++       +G     IG  + + +        I E        + F      P
Sbjct: 129 ISEVLLAADMDPTISVGGILKTIGGNIRVGK----SGNFITEACEYTNSFLHF-----YP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+VI  I   HL  F  +E+I  +  +    L   GT+ +N D   ++ +         
Sbjct: 180 KISVILNIEEDHLDFFKDLEDIRHSFHQFSALLPSDGTLIINGDIKDYQEIYEGLDC--- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + ++G S   D+   + +   +   S+  ++       V     G H   N L  +  
Sbjct: 237 -NVITYGSSAEFDYSATEIQYDEKGFVSFELLKHNTSCGRVQLSVTGDHNVSNALAAIAT 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L   +DT  K L  F    G  +R+         T++D+ Y  +P  + A +     
Sbjct: 296 AELLGIPMDTIRKGLLSFS---GTDRRFEYKGTFNGVTVVDD-YAHHPTEIAATLKAAQH 351

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R  A   +  E   LS + H+ LA++ +      + +S   +  
Sbjct: 352 YPHNEIWCVFQPHTYTRTKAFFHEFAE--ALSHTDHLVLADIYAARETDTLGISSSDLA- 408

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            K+A       HY  +   +  F++ +   GD+++   +   
Sbjct: 409 -KEAAKLGTDTHYYPSFAEIEAFLKENCKSGDLLITMGAGDV 449


>gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
 gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
          Length = 495

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 166/482 (34%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+KG   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVTGLPARELREMTLDSRVAASGDLFVAVKGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSENMRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +T           +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G I+     ++    V T ++  HL     +E   +AK  +F      G   +
Sbjct: 181 AMEVSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFS-THHYGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD            L      S     N +      +          + +        
Sbjct: 240 NADDEVGRRWLT---NLPDAVAVSMEDHINPNCHGRWLKAVAVDYHDSGATIRFTSSWGE 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVCG---RMEVFSAPGKTT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCGGQLWCVFGCGGDRDKGKRPLMGAIAEQYA--- 406

Query: 401 ISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV-- 449
              V ++  +         + D L   +    +  M+G    + +++    + DVV+V  
Sbjct: 407 -DVVVVTDDNPRTEEPRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|256830370|ref|YP_003159098.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579546|gb|ACU90682.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
          Length = 458

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 147/414 (35%), Gaps = 54/414 (13%)

Query: 63  KGAGLVV----VNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV    V+ D        +  +P+    ++L  L +L V          +A+ G+
Sbjct: 63  QGAQVVVRSTAVSEDNPELEEARAHGVPIIPRAEMLAELMRLKVG---------VAVAGT 113

Query: 117 VGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +L      + +  T    G  N +         M     + I E   S   +
Sbjct: 114 HGKTTTTSLLATIFMEAHLDPTVIIGGRLNAYGS-----NAMLGQGRYLIAEADES---D 165

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             FL  L  P I+++T +   HL  +  ++EI  +  +    +   G   +  DD   + 
Sbjct: 166 GSFLCLL--PRISIVTNVDADHLDYYKDLDEIRDSFVDFMNSVPFYGLNVVCGDDKGVQS 223

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           + ++      + + ++G  +  D +      C   S   V  Q +   EV     G H  
Sbjct: 224 ILSRVR----RPVMTYGFGEENDLRAEII-SCEAGSRFNVYRQSEFWGEVTLTHPGRHNV 278

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +G+           I  L  F    G G+R+     +    ++D+ Y  +P  +
Sbjct: 279 LNALAAIGVAMEAGVPKKDIIHGLGAF---AGVGRRFEHKGERNGVLVVDD-YGHHPTEI 334

Query: 354 KAAISVLS----------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            A +                 PH   R  A+ GD  ++             +  +Y  S 
Sbjct: 335 AATLETARLCYPHKRLVVAFQPHRFTRTQALFGDFSKVFAGVDQL-----LLTEIYPASE 389

Query: 404 VWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + G    +L  A+ +  S  V + E    +   +   L +GD+ +   + S 
Sbjct: 390 SPIPGVSGQSLAQAIRQVTSTPVRFFEDFGSMQAALGEILQEGDLFLTLGAGSI 443


>gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
 gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
          Length = 471

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 161/421 (38%), Gaps = 41/421 (9%)

Query: 52  DGHD--FILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            GH   +I  A V   +  V  +   + +     IPV     +L  + +           
Sbjct: 63  HGHHEKYIRDADVIVYSSAVSCDNVEIQAARHALIPVVPRALMLAEIMRFRY-------- 114

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++   L                IG  L   R    +  G + + 
Sbjct: 115 -SIAVAGTHGKTTTTSLVASLLGEGGLDP------TFVIGGKLNSTRTHARLGSGRYLVA 167

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   ++P IA++T I   H+       +++  +  E    L   G   L  
Sbjct: 168 EADESDASFL--YLKPMIAIVTNIDRDHMGTYSGNFQQLKKSFLEFLWHLPFYGLAVLCC 225

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286
           DD F   +        ++ I ++G S++AD ++  ++Q   +++  V + + K M+++ +
Sbjct: 226 DDPFIRSILPDI----MRPILTYGFSEDADIRITSFQQKEIKNYFRVLRPKKKPMDIILN 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  + + S L    D   KALS F   + R +       +    L+ + Y
Sbjct: 282 LPGEHNALNALAAIAVASELGIKNDVICKALSHFSGVDRRFQVLGKLTCKHGDALLIDDY 341

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-------- 398
             +P  + A +  +    P     R  V+         ++    D  ++LS         
Sbjct: 342 GHHPREIAATLKAIRHAWPD----RRLVMTYQPHRYTRTRDLFSDFVKILSQVDHLLLLN 397

Query: 399 -YNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            Y      +SG    AL  +  L + I+  + E  + L   +   + DGDV++++ +   
Sbjct: 398 VYAAGEAVISGADSAALLKSIHLNKQINPIHIEDKEKLMSILDEIIQDGDVLLLQGAGDI 457

Query: 456 G 456
           G
Sbjct: 458 G 458


>gi|209696051|ref|YP_002263981.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
 gi|226706336|sp|B6ELH4|MURC_ALISL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|208010004|emb|CAQ80327.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
          Length = 487

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 164/450 (36%), Gaps = 58/450 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFG 87
           R      + FF        GH      V+K A +VVV+T +  +   +       IPV  
Sbjct: 62  RLAEKGADIFF--------GHH--ASNVEK-ASVVVVSTAIDQANPEIVAAKENRIPVIR 110

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             ++L  L +             IA+ G+ GKTTT  + T   S            N  +
Sbjct: 111 RAEMLAELMRYR---------HGIAVAGTHGKTTTTALTTQIYSEAGLD---PTFVNGGL 158

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
                         F I E   S    +      ++P ++++T I   H+  +    E +
Sbjct: 159 VKNAGTNARLGSSRFLIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFEVL 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                +    L   G   +  DD     L  +      + + ++G S +AD +L  ++Q 
Sbjct: 214 KQTFIDFLHNLPFYGQAVMCIDDDVVRELLPRVS----RQVITYGFSDDADVRLINYRQE 269

Query: 267 SEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++S+  VQ + ++ +++V +  G H A N    + + +    +    + AL  F     
Sbjct: 270 GQKSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDSAILSALLNFEGAGR 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  +           ++ + Y  +P  +   I      +   + R + +          +
Sbjct: 330 RFDQLGEFETGNGHAMLVDDYGHHPTEVDVTIKAAR--AGWEDKRLVMIF--QPHRYSRT 385

Query: 386 QSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLF 434
           +  + D A VL   ++     V+ +G   +A  D  AL R+I         +  T+D L 
Sbjct: 386 RDLYDDFANVLDNVDVLIMLDVYSAGEKPIAGADGRALCRTIRARGKLDPIFVPTIDALP 445

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             + + + + D+V+ + +   G  +L   L
Sbjct: 446 SVLANIIQNNDLVLTQGAGDVG--KLAKQL 473


>gi|238021216|ref|ZP_04601642.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
 gi|237868196|gb|EEP69202.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
          Length = 472

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 156/423 (36%), Gaps = 41/423 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +VV +T +      +   +     V+     LA   R R     IAI G+ GKTTT 
Sbjct: 64  GAEVVVASTAIKQDNPEIQAAIARHIPVIPRAMMLAEIMRFRES---IAIAGTHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +    L +              IG  LT A     +  G + +  +   +  FL   + 
Sbjct: 121 SLTASILGAAGLDP------TFIIGGKLTAAGTNAKLGKGTWMVAEADESDASFL--YLS 172

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P   VIT I   H+  +    +++  A  +    +   G  FL  D +    +  K    
Sbjct: 173 PVFTVITNIDEDHMDTYNHDADKLRQAFIDFVHRMPFYGKAFLCIDSANVRAILPKIQ-- 230

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-----GKSMEVVHHGIGYHMAQNM 296
             K   ++    + AD      +    Q    V  +      ++ +V  +  G H   N 
Sbjct: 231 --KPFATYAIDDETADLWASNVRTHDAQMQFTVNRKHADNSVQTFDVTLNCAGRHNVLNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKA 355
           L ++G+     A V+   + L+ F     R + Y    L QG   L+ + Y  +P  M+A
Sbjct: 289 LASIGVALECKAPVEAIQQGLATFGGVGRRFQSYGEINLPQGGKALVIDDYGHHPVEMQA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL 412
            +S      P+       VL         ++    D   +L+  +    + V+ +G   +
Sbjct: 349 TLSAARGAFPNNR----LVLAFQPHRYTRTRDLFEDFVTILNSVDALVLTDVYAAGEEPI 404

Query: 413 ALKD--ALPRSIHVH------YSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              D  AL R++ VH      Y   ++ +    + + L DGDVV+   + S    R+   
Sbjct: 405 VAADSRALTRAVRVHGKLEPIYCADVNAVPETLLHNVLQDGDVVLTMGAGSIN--RVAQG 462

Query: 464 LLE 466
           L++
Sbjct: 463 LVD 465


>gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa
           Temecula1]
 gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23]
 gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1]
 gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23]
 gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 477

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 132/398 (33%), Gaps = 45/398 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  ++   LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFR---------HGIAVAGTHGKTTTTSLIAAVLSEGG- 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                      +      A++     + + E   S    +R     + P +AV+T I   
Sbjct: 142 -LDPTFVIGGQLLAAGANAKLGAG-QWLVVEADESDGSFLR-----LNPLVAVVTNIDAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL N+      I  A  E  + L   G   L  DD     L  K+     + + ++G   
Sbjct: 195 HLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELVGKAR----RHVMTYGIDA 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD +     Q   +    + L  GK + V     G H   N L    +   L    +  
Sbjct: 251 AADVRAEDVVQDGARMCFTLCLPEGKVIPVTLALPGRHNVLNALAASAVGWQLGVPPEVI 310

Query: 314 IKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +AL  F    G G+R+      A+  G    + + Y  +P  ++A   V +        
Sbjct: 311 GRALKSFV---GIGRRFNDLGDVAIGNGACVRLIDDYGHHPRELEA---VFAAARGGWPD 364

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPR 420
           +R+ V             F    A VLS         +Y    V + G    AL  A+  
Sbjct: 365 KRLVVAFQPHRYSRTRDQF-DAFAAVLSSVDALVLSEVYPAGEVPIPGADAKALARAIRA 423

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                      +  L   +   L +GD++++  +   G
Sbjct: 424 RGRSEPVVVGQVASLIDVLPDVLQEGDLLLMMGAGDIG 461


>gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
          Length = 300

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 27/307 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
             LVVVN +   S    ++    V D L   ++    +      +     +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQSLSA---NVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELG 168
             M+ +    ++K  A +G+    I    T                +  VD       L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224
           +S  G +      V   +A+ + +   HL     +E    AK+ +F    E L K   + 
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DDSF E L+  +       ++S+G  + A F     ++  +    +      + +V 
Sbjct: 238 LNNDDSFSEYLRTVTPY----EVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVK 293

Query: 285 HHGIGYH 291
              +G  
Sbjct: 294 SPYVGKF 300


>gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ED1a]
 gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli ED1a]
          Length = 495

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 164/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNEPLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|330815444|ref|YP_004359149.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367837|gb|AEA59193.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 154/424 (36%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGSGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDEDHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVV 284
             DD     +         K +  +G S +A+ +  +      +    V   G   + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAEVRAEQVDARDGRMHFTVIRDGLAPLRVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L        +AL+ F+    R +RY   A   G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGELAAADGGSYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHV------LALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G          AL  AL     V   +   +D +   +   +  GDVV+   +
Sbjct: 388 LTEVYAAGEAAIPTASGEALSRALREIGRVDPSFVAGVDEVPAALARVVRAGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20]
          Length = 528

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 96/461 (20%), Positives = 157/461 (34%), Gaps = 50/461 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVF 86
           G+S+DS   A  E F  + G    G  F   AV  GA  V+ + D    +       PV 
Sbjct: 49  GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHETAPGTPVL 108

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             DD    +  L+              A+TG+ GKTTT   L   LS+        G+  
Sbjct: 109 VHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGTVE 168

Query: 145 NHI-----------GVPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +                L RM        V     E   SH   +  L  LV   +A 
Sbjct: 169 LRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEAS-SHAIVLHRLDGLVV-DVAG 226

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AKA++F   E      +  DD +   L A++  + I  + 
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKAQLFTP-EHARRGVVCVDDQWGAALAAEAP-IEIDRVR 284

Query: 249 SFGKSKNADFQLRK--WKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++     AD+ +           +   +    G+ +E      G    QN  + L +   
Sbjct: 285 AYPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIR 344

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 TA  AL+  H   GR +R      +    ++D  +   P +M+ A+  +  I+P
Sbjct: 345 AGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPEAMELALKAVRPITP 402

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRS 421
              GR I V G     G+  Q     L EV +      V             +++A+   
Sbjct: 403 ---GRLIVVFGS---DGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEG 456

Query: 422 IHVHYSE--TMDGLFLFIQSSLV-------DGDVVVV--KS 451
           +     +   ++ +  +   ++          D V+V  K 
Sbjct: 457 VRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKG 497


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040773|gb|ACT57569.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 145/398 (36%), Gaps = 45/398 (11%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +    +IP+    ++L  L +             I+++G+ GKTTT  ++   L   K
Sbjct: 83  CIAARERNIPIIFRSEMLAGLMRCR---------KSISVSGTHGKTTTTSLIAALLEQGK 133

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                I      I    T AR+    ++ + E   S    IR     +   I V+T I P
Sbjct: 134 FDPTVIN--GGIINSYGTNARIGTS-EWIVVEADESDGTFIR-----LPSDIVVVTNIDP 185

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL  +     I +A  +  + +   G   +  D      L A+      + I ++G+  
Sbjct: 186 EHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQN---RKIITYGRHP 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLMTLGIVSILT 307
            AD +    ++ S +S  +V +QG          ++    IG H   N   ++ +   L 
Sbjct: 243 QADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +   K L+ F    G  +R+          + D+ Y  +P  + + ++ + QI P  
Sbjct: 303 LSSEDVKKGLASFS---GIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICP-- 356

Query: 368 EGRRIAVLGDMCEMGELSQSFHI--------DLAEVLSLYNISHVWLSGFHVLALKDALP 419
             R+I  +        LS  F          D+  +  +Y+     + GF    L   + 
Sbjct: 357 --RKIIAIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIK 414

Query: 420 RSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              H   +Y ++ D L   I +    GD ++   + + 
Sbjct: 415 LQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGNI 452


>gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 173/485 (35%), Gaps = 61/485 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             +V   +  A+ G++     +PV  + ++   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L     ++ +T A +G+  N +      A         + +             
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVDQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F    + G + +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFAD-HRVGQMII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQ 277
           N DD       AK       T+      +N           +  +       + +     
Sbjct: 240 NADDEVGLRWLAKLPDAVAVTM------ENNLVPGCRGRWLKATQIDYHDNGATIAFDSS 293

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               E+    +G     NML+ L  +  L   +D  + A +   P  G   R      +G
Sbjct: 294 WGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGAQLQPVCG---RMEVFHAEG 350

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T++ + Y   P +++ A+        H +G+   V G   +  +  +     +AE L+
Sbjct: 351 KPTVVVD-YAHTPDALEKALEA---ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLA 406

Query: 398 LYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V ++  +  +         +   L  +  V                  + DVV+
Sbjct: 407 ----DRVVVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVL 462

Query: 449 V--KS 451
           V  K 
Sbjct: 463 VAGKG 467


>gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1125]
 gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1044]
          Length = 495

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 167/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFG 163
           TTT ++L      + +T A +G+  N +   +                    +  D  F 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G ++     ++   +V T ++  HL     +E   +AK  ++      G  
Sbjct: 181 AMEVSSH--GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQA 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD       AK       ++     + N      +  +       + +        
Sbjct: 238 IINADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+     +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 464

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 143/392 (36%), Gaps = 43/392 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L IPV    + L  + +             +A+ GS GKTTT  M+   L+     
Sbjct: 84  EARRLGIPVVHRGEALSGIMRGFRG---------VAVAGSHGKTTTTSMIAHVLAHGGLD 134

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C+      +      AR+    +  + E   S    ++     + PH+AV+T I   H
Sbjct: 135 PTCV--VGGRVPGFGGNARVGKK-NIFVAEADESDGSFLK-----ISPHVAVVTNIDQEH 186

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L  +   +++ +A       +   G   +  DD     +    +A      +++G + +A
Sbjct: 187 LDYYQSFDQLKAAFERFLASVPPEGLAVVCLDDPELSNILPSLNAPH----WTYGFNPSA 242

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D            +   V+L+GK +     +  G H   N L T+ +      + +   +
Sbjct: 243 DVVGSDVSAEGLSTSFSVRLRGKDIGSFSLNIPGVHNVLNALATIAVGHHFGLEAECVRE 302

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  F    G G+R+     +G   ++D+ Y  +P  +   ++   Q  P    RR+ V 
Sbjct: 303 ALERF---RGVGRRFTQVGEEGGIRIVDD-YGHHPTEIGVTLAAARQAYPD---RRLVVA 355

Query: 376 GDMCE-------MGELSQSFHIDLAEVL---SLYNISHVWLSGFHVLALKDALPRSI--H 423
                       +   + +F   LA+VL    +Y      ++G     L D +  S    
Sbjct: 356 FQPHRFSRTRDLLSRFASAF--QLADVLVLGEIYGAGESPIAGITGRRLFDEIRVSFENE 413

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +++     +   + + L  GD+++   +   
Sbjct: 414 AYFAADQSEMIARLMTILKPGDLLMTMGAGDV 445


>gi|319791669|ref|YP_004153309.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
 gi|315594132|gb|ADU35198.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
          Length = 494

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 156/439 (35%), Gaps = 59/439 (13%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA     GA  VV +T + +    +       IPV     +L  L +L         
Sbjct: 54  FVGHAAAHIEGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALMLAELMRLKQG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IAI G+ GKTTT  ++   L +     T+   G  N                D+ + 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLDAAGLDPTFVIGGRLN-----SAGANAQLGSGDYIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P +AV+T I   H+  +     ++  A  +    +   G   
Sbjct: 160 EADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFAKLKKAFVDFLHRMPFYGVAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           L  DD+    + A+        + S+G  ++A  +    +    Q     Q +       
Sbjct: 215 LCTDDAAVRDIVAQVTC----PVTSYGFGEDAQVRAVDVRAVGGQMHFTAQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQG 337
           + +V +  G H  +N L  + +   L    +   + L+ F     R +           G
Sbjct: 271 LPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGEVSVPGGTG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            FT+ID+ Y  +P  M A I   +       GRR  VL         ++    D  +V+ 
Sbjct: 331 SFTVIDD-YGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVIG 385

Query: 398 LYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +   +  V+ +G   +   D   L R++ V       + + +  +   +  +   GDV
Sbjct: 386 TADSVLLGEVYAAGEAPIVAADGRTLARALRVAGKVEPVFVDDIAAMPQAVLDNARPGDV 445

Query: 447 VVVKSSNSCGF--YRLINL 463
           V+   + S G    +++ L
Sbjct: 446 VLSMGAGSIGAVPGKVVEL 464


>gi|226328326|ref|ZP_03803844.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
 gi|225203059|gb|EEG85413.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
          Length = 487

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 165/431 (38%), Gaps = 61/431 (14%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VVV+T + A    +       IPV    ++L  L +             +AI G+
Sbjct: 77  RGASVVVVSTAISAENPEIIAAREARIPVIRRAEMLAELMRYR---------HGVAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  M++   +      T+   G     +    T AR+     + I E   S    
Sbjct: 128 HGKTTTTAMISNIYAQAGLDPTFVNGG----LVKSAGTHARLGCS-RYLIAEADESDASF 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P +AV+T I   H+       + +          L   G   +  DD    
Sbjct: 183 LH-----LQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGRAVMCLDDDVIR 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            +  K      + I ++G S++AD ++  ++Q   Q +  +  +G   ++VV +  G H 
Sbjct: 238 SIIPKV----GRYITTYGFSEDADVRITHYEQKGAQGFFTISREGMPDLQVVLNAPGRHN 293

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDE 344
           A N    + + +      +  + AL  F    G G+R+             Q    ++ +
Sbjct: 294 ALNATAAVAVATEEGIADEHILAALLSFQ---GTGRRFDFLGNYGLEHVNGQEGEVMLVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y  +P  + A I       P  + R + +          ++  + D A VL+  +I   
Sbjct: 351 DYGHHPTEVDATIKAARAGWP--DKRLVMIF--QPHRYTRTRDLYEDFATVLNQVDILLL 406

Query: 402 SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   +A  D  +L R+I         +   +  +   +   L D D+V+V+ + 
Sbjct: 407 TDVYSAGEAPIAGADSRSLCRTIRQRGKLDPIWVSDVSNISSILAGVLTDNDLVLVQGAG 466

Query: 454 SCGFYRLINLL 464
           + G  ++   L
Sbjct: 467 NIG--KIARRL 475


>gi|88858803|ref|ZP_01133444.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
 gi|88819029|gb|EAR28843.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
          Length = 478

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 147/397 (37%), Gaps = 43/397 (10%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG 141
           P+    ++L  L +             IAI G+ GKTTT  ++    +   +  T+   G
Sbjct: 98  PIVRRAEMLAELMRFR---------HGIAIAGTHGKTTTTSLIASVFAEAELDPTFVIGG 148

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NF 200
             N+      T A++     F I E   S    +      ++P ++VIT I   H+    
Sbjct: 149 LLNS----AGTNAKLGSS-RFLIAEADESDASFLH-----LQPMVSVITNIEADHMDTYQ 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E +     E    L   G   +  DD   + L  +      +   ++G+S  AD+++
Sbjct: 199 GDFENMKDTYIEFIHNLPFYGLAVVCCDDEVVKELIPRF----GRKFLTYGQSSQADYRM 254

Query: 261 RKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             + Q    S   V   QG S+ V  +  G H A N    + +        D  I+AL+ 
Sbjct: 255 SDFVQSGNTSQFVVTDKQGHSLNVKLNMPGLHNALNATAAIAVAKDEGIADDAIIRALAK 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R + Y     +    ++ + Y  +P+ + A I    Q  P     +  V+    
Sbjct: 315 FEGIGRRFEHYGNFATERGDIMLVDDYGHHPSEVAATIKAARQGWPD----KRLVMAYQP 370

Query: 380 EMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA-------LPRSIHVHYSET 429
                ++  + +  +VL+  +   +  V+ +G   +A  D+         R     Y   
Sbjct: 371 HRYTRTRDLYEEFVQVLAEVDLLLLLEVYPAGEQAIAGADSKSLCRSLRQRGKEPVYISG 430

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              L   +   L   D+V+ + + + G  +L+ +L E
Sbjct: 431 PSELTSVLSEVLQGNDLVLTQGAGNIG--QLVKVLAE 465


>gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
 gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
          Length = 472

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 152/421 (36%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +   L IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 72  AISADNPEIQAAHELRIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 123 SGIYAQAGLD---PTFVNGGLVKSAGTHARLGSSRYLIAEADESDASFLH-----LQPLV 174

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 175 AVVTNIEADHMDTYQGNFETLKDTFINFLHNLPFYGRAVMCIDDPVIRSLLPRVS----R 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S++AD ++ K++Q   Q +  +  +    + VV +  G H A N    + + +
Sbjct: 231 YVTTYGFSEDADVRIVKYEQKGNQGFFTIARENMPELTVVLNAPGRHNALNATAAVAVAT 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D    + AL  F    G G+R+        R    +    ++ + Y  +P  + A 
Sbjct: 291 EEGIDDQHILSALVEFQ---GTGRRFDFLGNYSLRHVNGKEGEVMLVDDYGHHPTEVDAT 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA 413
           I       P  + R + V          ++  + D A VLS  ++     V+ +G   + 
Sbjct: 348 IKAARAGWP--DKRIVMVF--QPHRYSRTRDLYDDFAHVLSQVDVLLMLEVYPAGEKPVP 403

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I         Y    + +   +  +L D D+++V+ + + G  ++   L 
Sbjct: 404 GADSRSLCRTIRGRGQLDPIYVAEPEQVAQILAQALEDNDLILVQGAGNIG--KIARNLA 461

Query: 466 E 466
           E
Sbjct: 462 E 462


>gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
 gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
          Length = 459

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 159/440 (36%), Gaps = 52/440 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR ++    FFAIKG   D + F+ + + K   ++VV+ +              VDD
Sbjct: 16  VYDSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSENGFDDERC-----IKVDD 70

Query: 91  VLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-----------IKKTY 137
           V     L           K  ++ ITG+ GKTTT  +L     +             + +
Sbjct: 71  VRKCMGLAADHFFNHPSKKLKVVGITGTNGKTTTTYLLRSIFDNSEIIGTTGWTLKDERF 130

Query: 138 ACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               +    + +   L RM   + ++   E+    L   R     V   + V T I+  H
Sbjct: 131 KLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRI--EGVDFALKVFTNISQDH 188

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L  +  +E  A  K   FE L+      +N DDS+  +L   +         S+G S  A
Sbjct: 189 LDFYDNLENYAKTKLSFFERLKPK---VVNADDSYGRMLIDAA-------TISYGFSDFA 238

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +   ++   +    ++ +  +++ +    IG +   N++  LG+      D     + 
Sbjct: 239 FIKPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDFARIEEG 298

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ++      GR + ++     G + ++D  Y     +M+  +  L++I    +GR I V G
Sbjct: 299 IAKSKGAPGRLEFFQ---KDGAYAVVD--YAHTDDAMRNVLEALNKIK---KGRIITVFG 350

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYS 427
              +     +     +AE LS      V ++  +  +         + + +     V   
Sbjct: 351 AGGDRDRTKRPKMGSIAESLS----DVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVE 406

Query: 428 ETMDGLFLFIQSSLVDGDVV 447
                           GD+V
Sbjct: 407 PDRFEAIKKALGMAEKGDLV 426


>gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252]
          Length = 495

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 164/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
 gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
          Length = 482

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 150/423 (35%), Gaps = 47/423 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA    KGA ++VV+T +      +       IPV    ++LG L +          
Sbjct: 71  FIGHAADNIKGASVLVVSTAIDPENPEVKAAIEQRIPVVRRAEMLGELMRYR-------- 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  +LT  L+            +    +   L R  V+   G    
Sbjct: 123 -HGIAVAGTHGKTTTTSLLTCMLAEEG--------MDPTYVIGGLLNRTGVNAALGASRY 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       + P  A++T I   H+  +    + +     +    L   G   + 
Sbjct: 174 IVAEADESDASFLHLEPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAVVC 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD+    +  +      + + ++G + + D +    +Q   +S   V  + +  + +  
Sbjct: 234 GDDANIREIMPRIA----RPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRLTI 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  +G+ +          +AL  F     R +       +     + + 
Sbjct: 290 NQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGLEQGTVKLVDD 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------- 398
           Y  +P  ++A I    Q   H + R + +          ++    D  +VLS        
Sbjct: 350 YGHHPKEVEATIKAARQ--SHPDRRLVMMF--QPHRFSRTRDCFDDFVDVLSQVDQLLLL 405

Query: 399 --YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSN 453
             Y      + G    +L  ++     V     + ++G L   IQ  L   D+++ + + 
Sbjct: 406 EVYPAGEKPIVGADSRSLARSIRLRGEVEPILIDPVEGNLQNVIQKVLQPNDLLLTQGAG 465

Query: 454 SCG 456
           + G
Sbjct: 466 NVG 468


>gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
 gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
          Length = 512

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/472 (16%), Positives = 156/472 (33%), Gaps = 42/472 (8%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  AV +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLKAGDVFVAYAVDGADNRAFIADAVARGAAA 68

Query: 68  VVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V+   + + A+            D L      +           I +TG+ GKT+  + +
Sbjct: 69  VLYQPEGLAAAPAVPVALAVPALDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSCTQWI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGMS 170
             AL+++ +  A IG+    +   L               +LA++       +  E+   
Sbjct: 129 AAALTALHQPCAVIGTLGTGMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVAMEVSSH 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L + R   +     IAV T +   HL      +   +AKA++F          +N DD+
Sbjct: 189 ALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVINRDDA 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             + L  K         Y  G +   D          +  +  +   ++      +V   
Sbjct: 246 AGQRLLEKLAGRVRTIAYGIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADVEVG 305

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  LG +       D A+  ++      GR +R      Q    L+   Y
Sbjct: 306 TLGTFNVSNLLAVLGSLLAADVPFDAALAEIARLESVNGRMQRL-GGRLQNDEPLVVIDY 364

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  L  I+    GR + + G   +     +     +AE  +        +
Sbjct: 365 AHTPDALEKTLDALRPIATARGGRLVCMFGCGGDRDATKRPLMGAIAERFA----DETVV 420

Query: 407 SGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           +  +  +         +   +    H    E     +   ++ +  +  VV+
Sbjct: 421 TSDNPRSEDPQRIIDQIVAGMTAPDHARRIEDRASAILQAVRGAAREDVVVL 472


>gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
 gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
          Length = 524

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 161/458 (35%), Gaps = 41/458 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G + GISIDSR +   + + A+ G    G DF   A   GA  ++ +        +  +P
Sbjct: 34  GVITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAGRERAVATGLP 93

Query: 85  VFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D    L +    V     +  TII +TG+ GK+TT  +    L +       IG 
Sbjct: 94  VLVVPDPRAVLGRVAAWVYGNPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGLIGG 153

Query: 143 YNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +G     AR+                   V     E+    L   R     +   +
Sbjct: 154 VEIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGR--VAEIIYDV 211

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T ++  HL     +++  +AKA +F   + +    +N DD +   L  ++      T
Sbjct: 212 AIFTNLSQDHLDFHRDLDDYFAAKARLFTP-DHSRLGVVNIDDRYGRELAERAKIP--IT 268

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +S     +AD+++   +  ++ S   V   G    +V     G     N L  L  +  
Sbjct: 269 TFSPSGDADADWRVADVRLGADGSVFRVVGPGGVETDVSVALPGAFNVANALAALVALVE 328

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A+  + +     GR +R       G   +  + Y   PA++++ +  L  +  
Sbjct: 329 AGVPVPAAVAGIGMTTCVPGRMERV---PGPGDIQVFVD-YAHKPAAVESVLRSLRAV-M 383

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALK 415
               R + V+G   +     +    + A  L+   I              L+     AL+
Sbjct: 384 GSGRRLVIVVGCGGDRDRGKRPLMGEAAARLADAAIFTNDNPRSEDPLAILAAMLSGALR 443

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  HV              S+   GDVV+V  K 
Sbjct: 444 VPAAERAHVIVEPDRAAAIDLAISTARSGDVVLVAGKG 481


>gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli S88]
 gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IHE3034]
 gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263]
          Length = 495

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 164/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
 gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
          Length = 475

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 149/450 (33%), Gaps = 56/450 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I    I +     + G++ + + I     F  +     D   +I   +  G
Sbjct: 1   MKLRELLHNI----IDVNFDIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYIDQILSCG 53

Query: 65  AGLVVVNTDMVASIGSLSIP------VFGVDDVLGALNKL-AVAARLRSKATIIAITGSV 117
           A  ++ +  +  ++    IP           +     +++ +   + +    + A+TG+ 
Sbjct: 54  AKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVDVDF 162
           GKT+  E       +     A IG+    I                  L      + V+ 
Sbjct: 114 GKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEH 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG 221
            + E     + + R   H ++   A  T  +  HL     +      K  +F E L +  
Sbjct: 174 LVLESSSHGIDQYRI--HGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGK 231

Query: 222 TIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           T  LN D D +  LLK          + ++GK K +D  L +         + V++  + 
Sbjct: 232 TAILNADIDEYGALLKIAEKRSN--KVVTYGK-KGSDITLLEQTSTPNGQHLTVKIDNQI 288

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G   A N+L  +GI  +   ++      +       GR ++ +         
Sbjct: 289 YNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVK--------P 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y   P+++K     L  +  H   + I V G     G   Q+   ++ ++  +Y 
Sbjct: 336 FAFVDYAHTPSALK---QALLSLKWHINKKIILVFGC---GGNRDQTKRSEMGKIAQMY- 388

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              V ++  +      A  R   + +    
Sbjct: 389 ADKVIITDDNSRDEDPAKIRHDILLHCPDA 418


>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 495

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 177/485 (36%), Gaps = 61/485 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             +V   +  A+ G++     +PV  + ++   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L     ++ +T A +G+  N +      A         + +             
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F G  + G + +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALF-GEHRVGQMII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQ 277
           N DD       A+       T+      +N           +  +       + +     
Sbjct: 240 NADDEVGLRWLAQLPDAVAVTM------ENNLVPGCRGRWLKATQIDYHDNGATIAFDSS 293

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               E+    +G     NML+ L  +  L   +D  + A S   P  GR + ++    +G
Sbjct: 294 WGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQA---EG 350

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T++ + Y   P +++ A+        H +G+   V G   +  +  +     +AE L+
Sbjct: 351 KPTVVVD-YAHTPDALEKALEA---ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLA 406

Query: 398 LYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V ++  +  +         +   L  +  V                  + DVV+
Sbjct: 407 ----DRVVVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVL 462

Query: 449 V--KS 451
           V  K 
Sbjct: 463 VAGKG 467


>gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
 gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
          Length = 499

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 150/480 (31%), Gaps = 46/480 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T H LL+A+       V    V  ++ DSR +     F  + G   DG  F   A+  GA
Sbjct: 4   TLHALLKAVGLPVPAGVANATVTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAALASGA 63

Query: 66  GLVVVNTDMVASIGSLSIP-VFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTT 121
             V++     A+        V  V D +         A   R   +  +I +TG+ GKTT
Sbjct: 64  AAVLIGEQAAAAHPPAPGDSVLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLAR-MPVDVDFGIF 165
           T  ++     +  +  A  G+  N                      LA  +         
Sbjct: 124 TTHLIEHLSQACGRPAALFGTLVNRWPGHSLTATHTTAAADRLQAQLAEALEGGTQVAAM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGT 222
           E+    L + R      R   AV T +   HL     +E    AKA +F     + +   
Sbjct: 184 EVSSHALDQQR--VAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGEGPR 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L  +      +  +    +  AD  +   +  S      ++       
Sbjct: 242 AVVNVDDPWGRQLADRL----GERAWRCSLAHEADLTMADLRMTSNGVDGALRTPLGEGR 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTL 341
                +G     N+L  +G +      +   + AL  F    GR +R     +       
Sbjct: 298 FHSPLVGRFNLMNVLQAVGALLQQGLPLPLLLNALPSFRGVPGRMERIVLTGSAAEDHPA 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P  ++ A+       P   G+ I V G     G+  +     +A + +    
Sbjct: 358 VLVDYAHTPDGLRNALEACR---PFVRGQLICVFGC---GGDRDRGKRPQMAAIAAALAD 411

Query: 402 SHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V  S        G  +  +   LP                   +    GD+V++  K 
Sbjct: 412 QVVVTSDNPRTEDPGQILDDVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIAGKG 471


>gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 163/427 (38%), Gaps = 53/427 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD   + +         K I  +G + +A  +    +    +    V  +  + ++V  +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGLAADAQVRAVNVEAREGRMHFTVMREDAAPLDVTLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFT 340
             G H  QN L  + I + L        +AL+ F+    R +RY            G +T
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSDGQAAGSYT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +
Sbjct: 334 LVDD-YGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVD 388

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+ 
Sbjct: 389 ALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDVVIT 448

Query: 450 KSSNSCG 456
             + S G
Sbjct: 449 MGAGSIG 455


>gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
 gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
          Length = 503

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 159/455 (34%), Gaps = 51/455 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + +DSR +A  + F A+ G   DG DFI  A++ G   V+ + +   S  S    V  ++
Sbjct: 34  LHLDSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLAHAEPGGS-ASADARVIHLE 92

Query: 90  DVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            + G L +L      + +   +I +TG+ GK++    +      + +    +G+  +   
Sbjct: 93  GLAGQLGELGRSLFEVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLGHGRP 152

Query: 149 VPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             L   R+                   V+    E   SH  E   L    R   AV T +
Sbjct: 153 GALREGRLTTPGPLALQSALGELAAEGVERVALEAS-SHALEQERLA-GCRLTTAVFTNL 210

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  HL     +   A+AKA +F    +     +N DD    L+ A   A     + + G 
Sbjct: 211 SRDHLDYHGSMAAYAAAKARLFRR-PELRLAVVNGDDPLARLMLAGLPA--GVRVLAVGD 267

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +    ++   +   +     +        +    +G     N+L+ +  +  L  D++ 
Sbjct: 268 DEAVTLRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLEA 327

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              A +   P  GR +       +G   +ID  Y   P +++ A+  L    P  +GR  
Sbjct: 328 LFAAAAELAPVPGRMQV--LGDARGPTVVID--YAHTPDALENALQALRAHLP-DQGRLW 382

Query: 373 AVLGDMCEMGELSQSFHIDLAEVL--------------SLYNISHVWLSGFHVLALKDAL 418
            + G   +     +      AE                +   I    L+G     L ++ 
Sbjct: 383 CLFGCGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAG-----LSESA 437

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            RS  V              + +   DV+++  K 
Sbjct: 438 RRSARV--LGGRAAAIRETIAEVDAEDVILIAGKG 470


>gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
 gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
          Length = 458

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 142/400 (35%), Gaps = 42/400 (10%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L IPV    ++L  L +L            +A+ G+ GKTT   ++   L++       
Sbjct: 86  ELQIPVIPRAEMLAELMRLKYG---------VAVAGAHGKTTCTSLVATLLAA------- 129

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G  +  + V   L  +  +   G  E  ++   E     + + P + V+T I   H+ +
Sbjct: 130 -GGLDPTVVVGGKLGALGTNAVLGRGEFLVAEADESDGSFNRLSPVVVVVTNIDREHMDH 188

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +   + +  A  E    +   G   +  DD     L  +      K + ++G+S  ADF+
Sbjct: 189 YGSDQALDEAFVEFMNKVPFYGAAIICLDDPRVAALIPRVR----KRVITYGQSGQADFE 244

Query: 260 LRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            R+      ++   +  QG+++  V     G H   N L  L +   L   +  A+ A +
Sbjct: 245 AREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTLAALAVAKELGVAMPVAMSACA 304

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    G G+R           L+ + Y  +P  ++A +       P    +R+ V    
Sbjct: 305 GFG---GVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWPD---KRLVVCFQ- 357

Query: 379 CEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIH--VHYS 427
                 ++    + A          +L +Y  S           L +A+    H  V Y 
Sbjct: 358 PHRYSRTRDLFEEFATAFYVADELLLLDIYAASEKKDPAVSAEKLAEAIRAHGHRRVEYV 417

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +     ++  L   DV     +     ++L   L +E
Sbjct: 418 GGQEAARERLEKMLGPDDVFFTMGAGDV--WKLGAELTKE 455


>gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 495

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 168/478 (35%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFG 163
           TTT ++L      + +T A +G+  N +   +                    +  D  F 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G ++     ++   +V T ++  HL     +E   +AK  ++      G  
Sbjct: 181 AMEVSSH--GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQA 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD       AK       ++     + N      +  +       + +        
Sbjct: 238 IINADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
          Length = 495

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|158321669|ref|YP_001514176.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus oremlandii
           OhILAs]
 gi|189028969|sp|A8MK48|MURC_ALKOO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158141868|gb|ABW20180.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus oremlandii
           OhILAs]
          Length = 465

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 144/413 (34%), Gaps = 39/413 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     +    +IP     ++LG + K    A        IA++GS GKTTT  +
Sbjct: 78  AAIKEHNPERMAAKERNIPQIDRAEMLGIIMKNYKKA--------IAVSGSHGKTTTTSL 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ +           + +  I V   L  +  ++  G  E  ++   E         P 
Sbjct: 130 ISLIMEY--------SNLDPTIMVGGELDEIGGNIKIGNSEHFITEACEYVESFLKFYPF 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   HL  F  +  I  A  +    + + G +  N DD+  + +          
Sbjct: 182 IGIILNIDEDHLDYFKDLNHIKEAFRKFINLIPQEGFLIANGDDANVQEILHSIEC---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            + ++G   +  F  R     ++      V  +G+SM     +  G H   N L ++   
Sbjct: 238 NLITYGLDSSNTFVARNISFTNDGYPIFTVDFKGESMGTFELNIPGKHNIYNALASIATA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L  +       +  F    G  +R+          ++D+ Y  +P  + A +      
Sbjct: 298 YLLGVEPSEIQNHIKKF---RGIHRRFDILGEVKGCKIVDD-YAHHPVEISATLEAAKNY 353

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+L D       + + HI + ++ +        +    +  +
Sbjct: 354 PHNKIWCVFQPHTFSRTKALLEDFSR--SFTNADHIIITDIYAAREQDTGEVHSEILANM 411

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                    V Y +  + +  +I   +  GD+V+   + +   Y++   +L+ 
Sbjct: 412 IQKNNMHSQVRYMKDFEDIAAYIYDHMEPGDLVLTMGAGNV--YQIGQKILQR 462


>gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 94/418 (22%), Positives = 159/418 (38%), Gaps = 51/418 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T + +    +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L++              IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD   + + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVKEIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
                   K I  +G + +A  +    +    +     ++     +++V +  G H  QN
Sbjct: 227 ----PFVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDIVLNLPGEHNVQN 282

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFTLIDESYNAN 349
            L  + I + L        +AL+ F+    R +RY            G +TL+D+ Y  +
Sbjct: 283 ALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVSSEGKTNGAYTLVDD-YGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  M A +   +       GRR  VL         ++    D  +VLS  +    + V+ 
Sbjct: 342 PVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVDALVLTEVYS 397

Query: 407 SGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+   + S G
Sbjct: 398 AGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDVVITMGAGSIG 455


>gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
 gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
          Length = 495

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 168/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L          K  ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLAAQGATVG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +    K     + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFTSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTATQLQPVCG---RMEVFSAPGKTTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +    ++ M+G    + +++    + DVV+V  K 
Sbjct: 408 VVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKG 467


>gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 163/427 (38%), Gaps = 53/427 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD   + +         K I  +G + +A  +    +    +     ++     +++  +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGFAPDAQVRAVNVEARDGKMHFTAMREDAAPLDITLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFT 340
             G H  QN L  + I + L        +AL+ F+    R +RY           +G +T
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQTRGAYT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +
Sbjct: 334 LVDD-YGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVD 388

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+ 
Sbjct: 389 ALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAIVRDGDVVIT 448

Query: 450 KSSNSCG 456
             + S G
Sbjct: 449 MGAGSIG 455


>gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
 gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
          Length = 508

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 140/430 (32%), Gaps = 38/430 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LLQ         +P   V G+S DSR +A    F  + G   DG  F   A+++GA 
Sbjct: 5   LHSLLQDCAVAIPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALERGAA 64

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTT 122
             ++     A        PV  ++D +         +       +  +I +TG+ GKTTT
Sbjct: 65  AALIGPAAAAQCPPGPADPVLVLEDPVAEWAGRLAASFWHDPSRRLALIGVTGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
             ++    +   K+ A  G+  N        A                           E
Sbjct: 125 THLIEHLSAGCGKSTALFGTLINRWPGHSVTASHTTAFADVLQGQLARAVEAGAQLAAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L +            AV T +   HL     +E    AKA +F      G+  +N
Sbjct: 185 VSSHALDQ--RRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARLFSSELLDGSAVVN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA---------DFQLRKWKQCSEQSWMEVQLQ 277
            DD +   L  +      + ++    +  A         + +L      ++     +   
Sbjct: 243 IDDPWGARLAERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDDLVFAADGVSGTLITP 302

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                     +G     N+L  +G++      +   ++A+  F    GR +R        
Sbjct: 303 LGCGAFRSPLVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRGVPGRMERVMLPEAAE 362

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++ + Y   P  ++   + L+   P   G+ + V G     G+  +     +A + +
Sbjct: 363 LPAVLVD-YAHTPDGLE---NALAACRPFARGQLVCVFGC---GGDRDRGKRPQMAAIAA 415

Query: 398 LYNISHVWLS 407
                 V  S
Sbjct: 416 RLADRVVVTS 425


>gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 464

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 159/421 (37%), Gaps = 49/421 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP+     +LG + K             IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPIIDRATLLGLIMKKYKYG--------IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++++ L  +       +G   + IG          +V  G  E  ++   E  
Sbjct: 119 GKTTTTSLISVILDGMEFDPTVLVGGEVDVIGG---------NVRVGSSEYFVTEACEYT 169

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    + 
Sbjct: 170 DSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQ 294
              +    K I ++G  +++D++ +      +  +  +V  + + M        G H   
Sbjct: 230 NGLN----KNIVTYGIYEDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVY 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +K
Sbjct: 286 NALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIK 341

Query: 355 AAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +                PH   R  ++L D  E  + +    I +A++ +        
Sbjct: 342 ATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADK--IIIADIYAAREKDTGI 399

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +S   ++ L     R   V Y +  D +  ++  +   GD+V+   + +   Y +  + L
Sbjct: 400 VSSKDLVEL--ISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNI--YEVGEMFL 455

Query: 466 E 466
           +
Sbjct: 456 K 456


>gi|239994434|ref|ZP_04714958.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii ATCC
           27126]
          Length = 481

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 153/402 (38%), Gaps = 44/402 (10%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KK 135
                IP+    ++L  L +             IA+ G+ GKTTT  +++   +      
Sbjct: 94  AREKRIPIIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTSLISTIFAEAEYDP 144

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           T+   G  N+      T AR+     + I E   S    +      ++P ++V+T I   
Sbjct: 145 TFVIGGLLNS----AGTNARLGKS-RYLIAEADESDASFLH-----LQPMVSVVTNIEAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           H+  +     ++     +    L   G   +  DD+  + ++ +      ++I ++G   
Sbjct: 195 HMDTYGGDFSKVKDTFVDFLSNLPFYGQAIVCGDDANIQEIRPRI----GRSILTYGFES 250

Query: 255 NADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + D++         ++   V + + + +++  +  G H   N L  + + +    D D  
Sbjct: 251 HNDYRAENVSLSFGKANFTVIRPEREPLDITLNLTGNHNVLNALAAIAVATDEGVDDDAI 310

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I+AL+ F     R ++            + + Y  +P  ++A I+      P  + R + 
Sbjct: 311 IRALASFGGIGRRFEQLGTFTTSKGEVCLVDDYGHHPTEVRATIAAARANWP--DKRLVM 368

Query: 374 VLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHV 424
           V          ++  + D  EVLS         +Y  S   + G    AL  ++ +   +
Sbjct: 369 VY--QPHRFTRTRDLYEDFVEVLSSVDALLLLDVYAASEQPIEGADSKALCRSIRQRGQI 426

Query: 425 H--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              Y    D L   + + + DGD+V+ + + + G  ++  LL
Sbjct: 427 EPVYVGDKDALPAILANIMQDGDIVMTQGAGNIG--QIAKLL 466


>gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 475

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 166/446 (37%), Gaps = 55/446 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A  +GA  VV +T + A    +       IPV     +L  L +L        
Sbjct: 56  GH---AAAHIEGADAVVTSTAVQADNPEVLAARERKIPVVPRALMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               IAI G+ GKTTT  ++T  L+         IG   N  G    L +     ++ + 
Sbjct: 108 ----IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGRLNSAGANAKLGQG----EYIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P +AV+T I   H+  +      + SA  +    +   GT  
Sbjct: 160 EADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           L  D+     +           + S+G S++A  +    +  + +    VQ +       
Sbjct: 215 LCTDNPAIREILPDVTC----PVTSYGFSEDAQVRAVDVRADAGRMRFRVQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           ++VV +  G H   N L  + +   L    +  ++AL+ F     R +RY       G  
Sbjct: 271 LDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYGELPAQGGGT 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + E Y  +P  M A    L+       GRR  VL         ++    D  +V+   
Sbjct: 331 FTLIEDYGHHPVEMTA---TLAAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVKVMGSA 386

Query: 400 NI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +   D   L R++ V       + + +  L   I  +   GDVV+
Sbjct: 387 DAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARSGDVVL 446

Query: 449 VKSSNSCGF--YRLINLLLEEFPAIQ 472
              + S G    +++ +L  E PA+Q
Sbjct: 447 CMGAGSIGAVPAKVVEMLRAEAPAVQ 472


>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
 gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
          Length = 471

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 167/459 (36%), Gaps = 55/459 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + D+   L+ LA     +      ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLRDLNQHLSNLAGQFYQQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLGETSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  V+       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +      +N DD        +     +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDDVGRRWLGQ-----LPQAVAV 235

Query: 251 GKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +N             + +     + +       + ++    +G     N+L+ L  +
Sbjct: 236 SMEENVPAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +   + +     P  GR + +    N      +   Y   P +++ A   L+  
Sbjct: 296 LSLGYPLAELLASAPNLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAA 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
             H +G+   V G   +  +  +     +AE L+      V ++  +  +      + D 
Sbjct: 349 RLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQAIVADI 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           L   +   +++ + G    + S++      DVV++  K 
Sbjct: 405 LSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 443


>gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
 gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
          Length = 462

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 162/421 (38%), Gaps = 47/421 (11%)

Query: 53  GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++     VV         + +    S  I V    ++L  L +L        
Sbjct: 57  GHK--AQNIEDDVTAVVTSSAISPTNEEIIEAKSKKITVISRGEMLAELMRLRYG----- 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI+GS GKTTT  +++  +        CI   N H  +    A   +  ++ + E
Sbjct: 110 ----IAISGSHGKTTTTSLISQIMMHAGLNPVCIIGGN-HFNLKSNAACNDLSSEYMVCE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +R     + P I V+T I   HL  +  +E +  A  E    +   G  FL 
Sbjct: 165 ADESDGSFLR-----LSPVINVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLC 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSM-EV 283
           ++D+  + L   ++    K  YS+G SK+ DF + +   +  +  ++       + + E 
Sbjct: 220 FEDNVVKDLSKSAN----KKYYSYGFSKDYDFYVDRDSIRVEAPITYFTAYHNSECLGEF 275

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H   N L ++G+   L  D+    + L  F   EG G+R    L     TL D
Sbjct: 276 SVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTF---EGVGRRLN-KLYDKEITLFD 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEV 395
           + Y  +P  +KA    LS +    + RRI  +            + +   +F+  D   +
Sbjct: 332 D-YAHHPTEIKA---TLSSVRNAYKNRRIIAVFQPHRYSRTELLLNDFEYAFNDADEVII 387

Query: 396 LSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +Y      + G     + D +  ++ HV Y   ++ +   +     DGD+++   + +
Sbjct: 388 SDIYAAGESPIPGISGEIICDVVRKQNNHVRYIPNIEDVLPVLDDIKKDGDIILTLGAGN 447

Query: 455 C 455
            
Sbjct: 448 I 448


>gi|118444708|ref|YP_877107.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium novyi NT]
 gi|166222976|sp|A0PXK5|MURC_CLONN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118135164|gb|ABK62208.1| UDP-N-acetylmuramate--alanine ligase [Clostridium novyi NT]
          Length = 458

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 154/429 (35%), Gaps = 49/429 (11%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-----RLRSKATI------ 110
            KGA + + +         L +    + D    L K          R      +      
Sbjct: 53  AKGAEIYIGHNGNNLKDVDLVVYTAAIPDSNPELVKARECNIQTMDRAEFLGHVMQGHKY 112

Query: 111 -IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IAI+G+ GKTTT  M +   LS+         + +  I V   L  +  +V  G  E  
Sbjct: 113 NIAISGTHGKTTTTSMFSHISLSA---------NLDPTILVGGNLDVINGNVRVGNSEYF 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           ++   E +       P+I VI  I   HL  +  I +I +   +  + +   G + +N D
Sbjct: 164 VTEACEYKASFLKFYPYIGVILNIEADHLDFYKDINDIQNTFLKFAKLIPNDGFLIVNAD 223

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
           D     +  +        + +FG + N D + +     + +   +V    +    +  + 
Sbjct: 224 DKRCVEVSKQVDC----NVITFGIN-NGDVRAKNIVFNNGRPTFDVYRNEEKLFTLTLNV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   + L ++     L   VD+ I+ LS F    G  +R+         T++D+ Y 
Sbjct: 279 PGNHNILDALASISSALSLNVPVDSIIEGLSTF---NGAHRRFEIKGKVDGITVVDD-YA 334

Query: 348 ANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KAA++               PH   R I++  D       + +       +  +
Sbjct: 335 HHPTEIKAALNAAKNFPHKRVFCVFQPHTYSRTISLFDDFANSFSNADTL-----VLADI 389

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           Y              L D +    ++     + + +  F++  L DGD+++   +     
Sbjct: 390 YAAREKDTGVVSSTMLGDKIRENGVNCKNLHSFEDIVTFLKGELKDGDLLITIGAGDV-- 447

Query: 458 YRLINLLLE 466
           YR+  + LE
Sbjct: 448 YRVGEMFLE 456


>gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI39]
 gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI39]
          Length = 495

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 167/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 489

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 44/401 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI+ DSR +     +  ++G   DGH +   AV  GA  ++        I  + +PV 
Sbjct: 25  ITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAVANGAVAILAEE----PIDGVEVPVV 80

Query: 87  GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + D   A  K+A         K  +  ITG+ GKTTT ++      +  +    I +  
Sbjct: 81  LLQDTKHAAGKVADLFYDHPSHKLKVYGITGTNGKTTTTKLTYDLFRAAGQKAGMISTIG 140

Query: 145 NHIGV-----------PLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             I              + L R+        V   + E+    L E R     V+ H A 
Sbjct: 141 AMIDGEMIDTPNTTPEAIILHRLLYQMVEQGVTDCVLEVSSHALMEGR--VEGVKFHAAA 198

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKT 246
            T +   HL   + +EE A AKA +F+ +  +G   + LN  D    +++  +  + +  
Sbjct: 199 FTNLTHDHLDYHASMEEYAQAKALVFKQVATSGGQAVILNEADPKSRVMEKAAEGVPVIW 258

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +   S+             ++  + V++ G   EV    +G   A N+   +G++   
Sbjct: 259 YATKALSEAP------ITVEWKEETVSVRIDGTVTEVPVFLLGDFNAANLAAAIGLMQAG 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             ++   I+ +      +G   R      +G    ID  Y   P  ++  +  LS     
Sbjct: 313 NVNMYQLIRHIPELRLPKG---RLEQIPFEGCEVYID--YAHTPDGLEKCLKALS----V 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                  VL      GE  +S    +  +   Y    +   
Sbjct: 364 PGEPLYMVLSA---AGERDRSKRAVMGRIAGQYCEGIIVTV 401


>gi|209519096|ref|ZP_03267902.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
 gi|209500468|gb|EEA00518.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
          Length = 467

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 162/427 (37%), Gaps = 53/427 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGADAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD   + +         K I  +G +  A  +    +    +     ++    S+++  +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGFAAEAQVRAVNVEAREGRMHFTAMREDAPSLDITLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFT 340
             G H  QN L  + I + L        +AL+ F+    R +RY            G +T
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGQVAGSYT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +
Sbjct: 334 LVDD-YGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVD 388

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+ 
Sbjct: 389 ALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDVVIT 448

Query: 450 KSSNSCG 456
             + S G
Sbjct: 449 MGAGSIG 455


>gi|262273812|ref|ZP_06051625.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
 gi|262222227|gb|EEY73539.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
          Length = 487

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 166/443 (37%), Gaps = 56/443 (12%)

Query: 47  KGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           KG       F+ HA     GA +VVV+T +      L       IPV    ++L  L + 
Sbjct: 66  KGAKV----FLGHAESNVDGASVVVVSTAIRQDNPELVAAKTARIPVVRRAEMLAELMRY 121

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARM 156
                       IA+ G+ GKTTT  + T+         T+   G     +    T AR+
Sbjct: 122 R---------HGIAVAGTHGKTTTTALTTLIYQEAGLDPTFVNGG----LVKSAGTNARL 168

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
                + I E   S    +      ++P +A++T I   H+  + G  + +     +   
Sbjct: 169 GCS-RYLIAEADESDASFLH-----LQPMVAIVTNIEADHMDTYGGNFDNLKQTFIDFLH 222

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     L  +      + + ++G S++AD +L+ ++Q  ++    V 
Sbjct: 223 NLPFYGLAVMCVDDPVVRELIPRI----GRQVITYGFSEDADVRLKDYRQEGQKGIFTVL 278

Query: 276 LQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             GK  + V  +  G H A N    + + +    + D  ++AL+ F     R  +     
Sbjct: 279 RAGKPDIHVELNIPGRHNALNAAAAVAVATEDGVEDDAILRALASFEGTGRRFDQLGLFP 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
               + L+ + Y  +P+ +   I            R + V          ++  + D A 
Sbjct: 339 VDDGYALLVDDYGHHPSEVDVTIQAARAGWADN--RLVMVF--QPHRYSRTRDLYDDFAN 394

Query: 395 VLSLYNISH---VWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVD 443
           VL   ++     V+ +G   +A  D   L R+I         +   +D L   + + +  
Sbjct: 395 VLEQVDVLLMLDVYPAGEAPIAGADGRSLCRTIRGRGKIDPIFVPDVDALPAALAAVIQP 454

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD+V+ + +   G  ++   L E
Sbjct: 455 GDLVLTQGAGDIG--KVARKLAE 475


>gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Escherichia coli O127:H6 str. E2348/69]
          Length = 495

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii Sb227]
 gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227]
 gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella flexneri CDC 796-83]
          Length = 495

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 168/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      ++           +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H IG     N+L+ L  +  L   +   +K  +   P  GR + +      G  T++
Sbjct: 299 IESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTVP---GKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|323699056|ref|ZP_08110968.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. ND132]
 gi|323458988|gb|EGB14853.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           ND132]
          Length = 483

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 153/430 (35%), Gaps = 47/430 (10%)

Query: 52  DGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
            G D +  A V   +  +      + +     IP+    ++L  L +L          T 
Sbjct: 74  HGADNVGDADVLIKSTAIPDRNPELVAARERGIPIIPRAEMLAELMRL---------KTG 124

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  +L    +        I      +      AR+    D+ I E   S
Sbjct: 125 IAVAGTHGKTTTTSLLATIFTEAGLDPTVI--IGGRLNTYGANARLGEG-DYLIAEADES 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +R     + P I V+T I   H+  +   + I  +           G   +  DD 
Sbjct: 182 DGSFLR-----LAPIITVVTNIDKDHMDFYDNQDAIDLSFMRFMNSTPFYGMNVVCGDDE 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + L         +   ++G  K    +         +S  +V L G+   EV     G
Sbjct: 237 GVQRLLPLIK----RPYLTYGLGKQNKLRGEIVSSHL-RSLFKVWLDGEEWGEVTVAQPG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +G+   +  D +  I+ L  F    G G+R+     +    ++D+ Y  +
Sbjct: 292 THNVLNALACIGVALEVGLDKEEIIQGLGNFG---GVGRRFERKGEKKGVIVVDD-YGHH 347

Query: 350 PASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           PA + A +    +            PH   R  A+ G+ C+    +     D+  +  +Y
Sbjct: 348 PAEIMANLRTAKECYPDRRLVVAFQPHRFSRTKALFGEFCKAFGDA-----DILLLTEIY 402

Query: 400 NISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             S   + G   L+L   + +     V +    + L   ++  L  GD+ + + + S   
Sbjct: 403 PASESPIPGVSGLSLAQGIKQVSETKVQFFPDFESLEKRLKDLLQPGDLFMTQGAGSI-- 460

Query: 458 YRLINLLLEE 467
           +++    LE+
Sbjct: 461 WKIGENWLEQ 470


>gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
 gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
          Length = 495

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 163/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +  A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
          Length = 495

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 455

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 141/401 (35%), Gaps = 42/401 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      VA+     IP+    ++L  L +L          T IAI G+ GKTTT  + 
Sbjct: 74  AIGDENPEVAAARKRGIPIIPRAEMLAELMRLR---------TGIAIAGTHGKTTTTSLT 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        I      IG  L        +  G + +  +   +  FL   + P +
Sbjct: 125 AAIFDEAGTDPTVI------IGGRLNAYGANARLGDGAYLIAEADESDGSFLC--LFPIV 176

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   H+ ++   + I  A  +    +   G   +  DD     L  +      + 
Sbjct: 177 TVVTNVDMDHMDHYPSQQAIDDAFVDFMNKVPFYGMNVVCGDDPGVRRLLPRVK----RP 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G  +    +      C++ S   V + G  + +V     G H   N L  +G+   
Sbjct: 233 VVTYGFGEGNAIRAE-VLACADSSLFNVIVNGDDIGQVRLAQPGRHNILNALAAIGVALE 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  +  L+ F    G G+R+     +    ++D+ Y  +PA + A ++   Q  P
Sbjct: 292 CDIAPEKIVAGLAKFG---GVGRRFERKGERDGVLVVDD-YGHHPAEIAATLATARQCFP 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKD 416
           H   R + V          +Q+   +  +V           +Y  S   + G    +L  
Sbjct: 348 H--RRLVVVF--QPHRFSRTQALFGEFCKVFDGVDKLLLTEIYPASEKPIPGVSGQSLAQ 403

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + +     V Y +  D +   +   L  GD+++   + + 
Sbjct: 404 GIRQVSKTDVTYHQDFDSVLAALPEVLQPGDLLLTLGAGNV 444


>gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D]
 gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D]
          Length = 483

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 160/419 (38%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E  + L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGLH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  +G FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  M A +   +       GRR  VL         ++    D  +VL   +    + V+
Sbjct: 342 HPVEMAATL---AAARGAFPGRR-LVLSFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  DGDVV+   + S G
Sbjct: 398 AAGEPPIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGDVVITMGAGSIG 456


>gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia sp. 4_1_40B]
 gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli H736]
 gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli ETEC H10407]
 gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520]
 gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482]
 gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii
           B253]
 gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Escherichia coli UMNK88]
          Length = 495

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 167/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 151/419 (36%), Gaps = 45/419 (10%)

Query: 51  YDGHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           + GHD   +A           V  +   V    S   P+    ++L  L +L        
Sbjct: 55  FLGHD-AANARDADVIVTSSAVAKSNPEVVEARSRKTPIIHRAEMLAELMRLKYG----- 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G  GKTTT  M+   L+         G  +  + V   +  +  +   G   
Sbjct: 109 ----IAIAGMHGKTTTTSMVASVLAG--------GGLDPTVVVGGRVNALGSNARLGNSR 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             ++   E       + P +AV+T +   H+  +  + ++ +A  E  + +   G     
Sbjct: 157 YLVAEADESDRSFLKLSPILAVVTNLDREHMDAYRDMADVETAFVEFMDRVPFYGATTAC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSM-EVV 284
            DD     +  +      + + ++G+S +ADFQLR   + S+  +  EV  +G  +    
Sbjct: 217 IDDPMLRAILPRVR----RRVMTYGESPDADFQLRMLPKDSDCHAVFEVNTKGLLLGPFR 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N    + I   L        + L  F   +   +R++        T++D+
Sbjct: 273 LHVPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFRGVD---RRFQVKGVVRGVTVVDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVL 396
            Y  +P  ++A +    +        R+ VL         ++            DL EV+
Sbjct: 330 -YGHHPTEVRATLQAARE----CGYGRVLVLFQPHRYSRTAELMEEFATAFGDADLVEVV 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y  +   + G    AL  A  +     Y+ + +     + S   DGDV++   + + 
Sbjct: 385 DIYAANEEPIVGVTAEALV-AQMQGTRAEYAGSFEEAVGRLVSEARDGDVILTMGAGNV 442


>gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
 gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
          Length = 495

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 165/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UMN026]
 gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
 gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
          Length = 495

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 166/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S     N +      +          + +        
Sbjct: 240 NADDEVGRRWLAK---LSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLSDLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
 gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
          Length = 512

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 163/480 (33%), Gaps = 51/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P      +  D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+   +    A    ++  V G+D + G +               I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAVPVAFAVPGLDQLAGEIASGW-YGDPSDALLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FE 166
            + +  AL+++ +  A IG+  + +   L               +LAR+       +  E
Sbjct: 125 TQWIAAALTALHQPCALIGTLGSGMPGQLVPTGFTTPDAPQLQRSLARLRDAGAKAVAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R   +     IAV T +   HL      +   +AKA++F          +N
Sbjct: 185 VSSHALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFTW-RGLRAAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSME 282
            DD+    L  K         Y  G + +A    +      +  +  +   ++      +
Sbjct: 242 RDDAAGRRLLEKLAGRVRTIAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEAD 301

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  ++      GR +R      Q    L+
Sbjct: 302 VEVGTLGTFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRL-GGRPQNDEPLV 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P ++   +  L  I+    GR + + G   +     +     +AE L+     
Sbjct: 361 VIDYAHTPDALDKTLEALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----D 416

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +         E      L         DVV++  K 
Sbjct: 417 EVVVTSDNPRSEDPQRIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVLLAGKG 476


>gi|238026133|ref|YP_002910364.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia glumae BGR1]
 gi|237875327|gb|ACR27660.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia glumae BGR1]
          Length = 466

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 162/426 (38%), Gaps = 51/426 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VV +T        V +   L +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVTSTAVRSDNPEVLAARRLGVPIVPRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGSGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G++ +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDEDHMDTYGHDFARLKQAFIEFTQKLPFYGSVVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G + +A+ +  +      +       +G++ + VV
Sbjct: 216 CVDDPNVRQIL----PFISKPVVRYGLAPDAEVRAEQVAARDGRMHFTAIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR---YRCALNQGFFTL 341
            +  G H  QN L  + I + L        +AL+ F+    R +R      A   G +TL
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGEIATADGAGSYTL 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  M A I   +       GRR  VL         ++    +   VLS  + 
Sbjct: 332 VDD-YGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEEFVNVLSTVDE 386

Query: 401 --ISHVWLSGFHV------LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G          AL  AL  S  V   +  T+D +   +   +  GDVV+  
Sbjct: 387 LVLTEVYAAGEAPIPTASGEALARALRASGRVDPAFVATVDEVPAALAQRVRAGDVVITM 446

Query: 451 SSNSCG 456
            + S G
Sbjct: 447 GAGSIG 452


>gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
 gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
          Length = 483

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  QG FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  M A +   +       GRR  VL         ++    D  +VL   +    + V+
Sbjct: 342 HPVEMAATL---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLGTVDALLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  D DVV+   + S G
Sbjct: 398 AAGEPSIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVVITMGAGSIG 456


>gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           TW10509]
          Length = 495

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV++  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 467


>gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401]
          Length = 495

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 301]
 gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 2457T]
 gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str.
           2457T]
 gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Shigella flexneri 2002017]
 gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri VA-6]
 gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-304]
          Length = 495

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|124265656|ref|YP_001019660.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
 gi|166224702|sp|A2SCY6|MURC_METPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124258431|gb|ABM93425.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
          Length = 469

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 96/486 (19%), Positives = 168/486 (34%), Gaps = 69/486 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L  +     G             +R +A      AI      GHD    A   GA 
Sbjct: 21  IAEILHNLGYRVSGSDQSDGAT-----TRRLASLGIRVAI------GHD---AAHIAGAE 66

Query: 67  LVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VV +T        V +  S  +PV     +L  L +L            IAI G+ GKT
Sbjct: 67  AVVTSTAVKGDNPEVIAARSRRVPVVPRAVMLAELMRLKQG---------IAIAGTHGKT 117

Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           TT  ++   L+      T+   G  N+        +R+    D+ + E   S    +  L
Sbjct: 118 TTTSLVASVLAEAGLDPTFVIGGRLNS----AGANSRLGAG-DYIVVEADESDASFLNLL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                P ++V+T I   H+  +   +  +  A  E    +   G   +  DD     +  
Sbjct: 173 -----PVLSVVTNIDADHMDTYGHDLGRLKHAFLEFLHRMPFYGAAIICGDDPGVRSIIP 227

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGK----SMEVVHHGIGYHM 292
                  + + S+G  ++A  +          Q     Q +       + +  +  G H 
Sbjct: 228 MIS----RPVVSYGFGEDAQIRAVDVLALPGGQMRFTAQRRNGVVMPDLPITLNLPGRHN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPA 351
             N L  + + + L        KAL+ F     R +RY       G    + + Y  +P 
Sbjct: 284 VLNALAVIAVAAELELPDAPVQKALAAFDGVGRRFQRYGELPTPAGGRFTLIDDYGHHPV 343

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSG 408
            M A I   +       GRR  V+         ++    D  +V+   +      V+ +G
Sbjct: 344 EMAAVI---AAARGAFPGRR-LVIAFQPHRYTRTRDCFEDFVKVMGGADAVLLGEVYAAG 399

Query: 409 FHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--Y 458
              +   D  AL R++ V       + + +  +   I  ++ DGDVV+   + S G    
Sbjct: 400 EAPIVAADGRALARALRVGGKLEPVFVDEIAAMPQAIADNVQDGDVVITMGAGSIGAVPG 459

Query: 459 RLINLL 464
           +++ LL
Sbjct: 460 QVVELL 465


>gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desmospora sp. 8437]
          Length = 399

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 121/388 (31%), Gaps = 54/388 (13%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----- 155
                    +IA+TG+ GKTT   ++   L         IG+ N  IG      +     
Sbjct: 1   YGHPTHDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPD 60

Query: 156 -----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                      +       + E     L   R  T   R   AV T +   HL     ++
Sbjct: 61  AVELQRGFRKMVDRGCTHAVIEASSHALHLGR--TRGCRFKTAVFTNLTQDHLDYHGTMD 118

Query: 205 EIASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
              +AK  +F  L        E      LN DD   E+    + A     + ++G    A
Sbjct: 119 HYRAAKGILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYMETTSA----QVITYGVEHPA 174

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D +    +  S  +   +     S+++    +G     N L    +       ++   + 
Sbjct: 175 DVRGENIRFYSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEV 234

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           LS      GR +       Q F  L+D  Y   P S++  ++ +   +   +G  I V+G
Sbjct: 235 LSRVKGVPGRLEA--VDAGQPFPVLVD--YAHTPDSLENVLTTVRGFT---KGNIICVVG 287

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVH 425
                G+  +     +A + +  +   V  S              +LA     P    + 
Sbjct: 288 C---GGDRDRGKRPQMARIAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPED-RIQ 343

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +        DVV++  K 
Sbjct: 344 VIPDRAEAIGYAVRHAQADDVVLIAGKG 371


>gi|94264635|ref|ZP_01288418.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
 gi|93454930|gb|EAT05171.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
          Length = 463

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 150/416 (36%), Gaps = 42/416 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +     +PV     +L  L +L V          IA+ GS GKT+T  M
Sbjct: 72  SAVGADNPEVVAAQEAGVPVIPRAAMLAELMRLKVNG--------IAVAGSHGKTSTTSM 123

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             + L+         IG   N  G    L       DF + E   S    +R     + P
Sbjct: 124 AGVVLAEAGLDPTVVIGGQVNSFGSNAKLGTG----DFLVAEADESDGSFVR-----LSP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + ++T I   H+ +++ +E + +A  E    +   G   L  DD     L         
Sbjct: 175 VLEIVTNIDHEHVDHYADLEAVKAAFLEFINRIPFYGAAILCLDDDNVTALLPMIR---- 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           K + ++G S  AD Q R+       S  EV  + + + +V     G H   N L  + + 
Sbjct: 231 KRVITYGLSSQADIQAREITTRGFISRFEVWSRQQRLGKVSLAVPGRHNVYNALAAIALG 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L     T  +A    +   G  +R +        T+ID+ Y  +P  ++A +   + +
Sbjct: 291 RELEIPFATIARA---LNNYSGVQRRLQVKGESDGITVIDD-YGHHPTEIRATL---AAL 343

Query: 364 SPHGEGRRIAVLGDMCEMGELS-------QSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
                 RR+ VL         +        +FH  DL  + ++Y      +      AL 
Sbjct: 344 RAAWPRRRLVVLFQPHRYSRTAGLFQDFCTAFHDADLLILNNIYAAGEAEIPEVAGDALA 403

Query: 416 DALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLEE 467
            AL R     V Y   +  L   +   L  GDVV+   + +       ++  L E+
Sbjct: 404 LALRRHGQREVSYVPELADLPTAVLGRLQRGDVVLTLGAGNIWRAGEEILAALAEK 459


>gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC
           19718]
 gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 473

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 165/429 (38%), Gaps = 54/429 (12%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           H      + + A  VV++T + +    +       IPV     +L  L +L         
Sbjct: 55  HTHAAENI-QSADAVVISTAIHSDNPEVIAARERRIPVVPRAMMLAELLRLRRG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IAI G+ GKTTT  ++   L+   +     IG     +     L +     +F + E
Sbjct: 108 ---IAIAGTHGKTTTTSLVASILAEAGQDPTFVIGGKLKTVDSHARLGKG----EFIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
              S    +      ++P + V+T I   H+S +      +     E  E L   G   L
Sbjct: 161 ADESDASFL-----YLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQ----GKS 280
             DD     + +       + + ++G  S++A       +    +      +      ++
Sbjct: 216 CVDDPHVREIISMI----TRPVTTYGIASEDAQICATNIRHDRCRMHFLAHIGVNGSPRT 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGF 338
           +EV  +  G H   N L  + + + L    +  +KAL+ F   + R ++Y      +QG 
Sbjct: 272 LEVTLNLPGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYGEIPLPDQGS 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F LID+ Y  +PA + A +   +       GRR  VL         ++    D   VLS 
Sbjct: 332 FALIDD-YGHHPAEIAATM---AAARNAFPGRR-LVLAFQPHRYSRTRDLFEDFVRVLSG 386

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            ++   + V+ +G   +   D  +L R+I V       Y E +D L   I +   DGDV+
Sbjct: 387 ADVLLLTEVYPAGEEPIIAADSKSLARAIRVQGKIEPIYIEQIDELKATIHTIAQDGDVI 446

Query: 448 VVKSSNSCG 456
           ++  + S G
Sbjct: 447 LIMGAGSIG 455


>gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           MurE [Pantoea ananatis AJ13355]
          Length = 471

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 169/455 (37%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F AI G   DG  FI  A+ +G   V+   +  AS G +     +PV 
Sbjct: 2   TLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ LA     +   K  +I +TG+ GKTTT ++L    S + +T A +G+  
Sbjct: 62  YLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMP----VDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   L  A       VDV   + E          + +S  G ++     +    AV T
Sbjct: 122 NGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +++  SAK  +F    + G   +N DD       A      +      
Sbjct: 182 NLSRDHLDYHGDMQQYESAKWLLFSE-HQVGVAIINADDEVGRRWLANLPD-AVAVTMEN 239

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 240 NLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  ++A +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YALDDLLRAAARLQPVNG---RMEVFSATGKPTVVVD-YAHTPDALEKALEA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
           +G+   + G   +  +  +     +AE  +      V ++  +  +      ++D L   
Sbjct: 353 KGKLWCLFGCGGDRDKGKRPLMGAIAEQFA----DIVVVTDDNPRSEDPQAIVQDILSGL 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +    +  + G    + S++      D+V+V  K 
Sbjct: 409 LDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKG 443


>gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
 gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
          Length = 495

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 167/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPSRALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S     N++      +  +       + +        
Sbjct: 240 NADDEVGRRWLAK---LPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 EDL933]
 gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 495

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 166/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L              + +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFG 163
           TTT ++L      + +T A +G+  N +   +                    +  D  F 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G ++     ++   +V T ++  HL     +E   +AK  ++      G  
Sbjct: 181 AMEVSSH--GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQA 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD       AK       ++     + N      +  +       + +        
Sbjct: 238 IINADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+     +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
 gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
          Length = 505

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 149/402 (37%), Gaps = 34/402 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           +  ++ I++DSR +     F A+ G   DG  +I  A++ GA  ++   D +A+ G +  
Sbjct: 29  EIQIDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIANEGDIAL 88

Query: 82  --SIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              + +  + D+   L+ +A         K  + A+TG+ GKTT  ++L    +      
Sbjct: 89  KDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQWANLAGYKA 148

Query: 138 ACIGSYNNH---------------IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             +G+  N                I +  TL+++     DF   E+    L + R     
Sbjct: 149 GVMGTTGNGLLTDLKPAANTTGSAIEIQQTLSQLVEQGADFTAMEVSSHGLVQGRIRD-- 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    ++ T ++  HL     ++  A+AK  +F    ++    +N DD+           
Sbjct: 207 IHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTE-HQSRMAIINADDAVGASWLKDIPN 265

Query: 242 LGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                I     + +A  +      +  ++   +E        +     +G   A N+L+ 
Sbjct: 266 AVAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEFDSSWGLGKFTAPLVGSFNATNLLLA 325

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  +      +   ++         GR + ++         ++   Y   P +++ A+  
Sbjct: 326 LATLLATNHSMADLLEKAPQLQAVIGRMEVFQDT----DKAMMVVDYAHTPDALEKALQA 381

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           L     H +G+   + G   +     +    ++AE LS   I
Sbjct: 382 LR---VHCDGKLWCIFGCGGDRDNGKRPMMAEIAERLSDCII 420


>gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
 gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
          Length = 489

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 141/378 (37%), Gaps = 51/378 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +AI G+ GKTTT  ++   L+      T+   G  N+        AR+    D+ + E  
Sbjct: 108 VAIAGTHGKTTTTSLVASILAKAGLDPTFVIGGRLNS----AGVNARLGSG-DYIVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +  L     P IA +T I   H+  +   +  +  A  +    L   G+  L  
Sbjct: 163 ESDASFLNLL-----PMIAAVTNIDADHMDTYGHDMARLKQAFVDFLNRLPFYGSAVLCL 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     +         K   ++G  ++A  +    +   ++   +V  + +  +EV   
Sbjct: 218 DDPHVREIV----PFVSKPTITYGLGEDAQVRAVDVRAEGDRMHFQVLRENEPPLEVSLA 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------------- 330
             G H  +N L  + I + L    +  + AL+ F     R +RY                
Sbjct: 274 LSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRFERYGEVPVPVREGREGAQA 333

Query: 331 -RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A   G FTLID+ Y  +P  ++A +  +    P     R  VL         ++   
Sbjct: 334 GQTAAASGTFTLIDD-YGHHPVEIEATLRAVRGAFPT----RRLVLAFQPHRYSRTRDLF 388

Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQ 438
            D   VL + +   ++ V+ +G   +   D  AL R++ +       +   +  L   + 
Sbjct: 389 EDFVRVLGMADQLILTEVYAAGEPPIVAADGRALVRAVRLASQRDPLFVADVAELPTTVL 448

Query: 439 SSLVDGDVVVVKSSNSCG 456
             +  GDVV+   + S G
Sbjct: 449 GLVQPGDVVITMGAGSIG 466


>gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
 gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE15]
 gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli AA86]
 gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
          Length = 495

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 408 VVVVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
 gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
          Length = 495

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 167/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S  +  N +      +          + +        
Sbjct: 240 NADDEVGRRWLAK---LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|242238101|ref|YP_002986282.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya dadantii Ech703]
 gi|242130158|gb|ACS84460.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech703]
          Length = 486

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 137/408 (33%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  ++T   +     
Sbjct: 97  AAHDARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAIVTSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +              + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDPVIRELLPRV----GRHITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QGK  + V  +  G H A N    + + +    + D  +
Sbjct: 256 ADVRVADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIEDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P  + 
Sbjct: 316 RALERFQGTGRRFDFLGEFPLEPVNGKSGAVMLVDDYGHHPTEVDATIKAARAGWP--DK 373

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR 420
           R + +          ++  + D A VLS          Y      + G    +L   +  
Sbjct: 374 RLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +       ++ L   +  +L +GD+V+ + + S G  +L   L E
Sbjct: 432 RGKIDPIMVPDVENLPELLAQALQNGDLVLAQGAGSVG--KLARRLAE 477


>gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
          Length = 483

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 160/419 (38%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E  + L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGLH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  +G FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  M A +   +       GRR  VL         ++    D  +VL   +    + V+
Sbjct: 342 HPVEMAATL---AAARGAFPGRR-LVLSFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  DGDVV+   + S G
Sbjct: 398 AAGEPPIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGDVVITMGAGSIG 456


>gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
 gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
          Length = 495

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      ++           +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H IG     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-272]
 gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 495

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 170/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  GR + +  A   G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAA---GKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|254226619|ref|ZP_04920199.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
 gi|125620838|gb|EAZ49192.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
          Length = 506

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++E+  +  G H A N    + + +    
Sbjct: 273 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLEITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
 gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli 042]
 gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
          Length = 495

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 167/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S  +  N +      +          + +        
Sbjct: 240 NADDEVGRRWLAK---LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|319957189|ref|YP_004168452.1| mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419593|gb|ADV46703.1| Mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 472

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 135/359 (37%), Gaps = 38/359 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             A+ +L           ++ +T S GKT+ K  +   L+   +TYA   S N   GV  
Sbjct: 143 RRAMKRLKSL----PDLKVVGVTASYGKTSIKNFIATLLAQRYRTYATPRSVNTLGGVMK 198

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   +P + +  + E+G    G+I  +T  V+PH AV+  I PAH+  F  +E I + K
Sbjct: 199 DVNEELPEEAEVYVVEMGARGEGDIAEITRFVQPHYAVVGKIGPAHIEYFKTLERIRNTK 258

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +                   +   +     + I+ FG        + + +   E +
Sbjct: 259 MEILQSPRL-----------IEAWVHESARIKPTEMIHIFGPE------IEEVEATLEGT 301

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                L+G+        +G   A N+   + +   L    D     L    P   R +R 
Sbjct: 302 CFT--LEGERY--CAKILGAFNAVNLAAAIHVARALGLTPDEIRAGLEKIEPVPHRLQRI 357

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               + G   ++D+S+N N   M A+      ++    GR++ +   + E  E   + + 
Sbjct: 358 ----DAGGKVILDDSFNGNIDGMMASFD----LAATWPGRKVLITPGLVEADE---ALNR 406

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +AE         + ++G    A+   +     + + E    +   +      GD+++ 
Sbjct: 407 QVAERAEEI-FDRIIVTGDLNYAIFKEIVSPEKLRHLERKSEMEQMLVEETRPGDLILF 464


>gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 476

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 141/389 (36%), Gaps = 41/389 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIG 141
           IPV    ++L  L +             IA+ G+ GKTTT  ++   L          IG
Sbjct: 100 IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGILGEGGFDPTFVIG 150

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              N IG    L       ++ + E   S    +      ++P +AV+T +   H+  + 
Sbjct: 151 GRVNSIGANGRLG----SGEYLVAEADESDASFLH-----LQPLLAVVTNVDADHMGTYG 201

Query: 202 -GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
                + +A  E    L   G   +  +D     L         + + ++G  ++AD++L
Sbjct: 202 GDFTALKAAFLEFLHHLPFYGLAVVCLNDPVLRELLPDI----GRPVLTYGTCEDADYRL 257

Query: 261 RKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           R+ K    ++   V   G    + VV +  G H A N L  + +   L A+     +AL 
Sbjct: 258 RELKHVQGRTQFRVARPGNDNWLTVVLNLPGAHNALNALAAMVVAHELGAEDAAIQRALE 317

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R + Y          L+ + Y  +P  + A +  L        GRR+ V+   
Sbjct: 318 GFSGIGRRFQCYGEIATPRGRVLLVDDYGHHPRELTATLEALHA---GWPGRRVVVVFQ- 373

Query: 379 CEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPRSIHVHY--S 427
                 ++    D  E          L +Y      ++G     L  A+  + HV     
Sbjct: 374 PHRYTRTRDLFEDFIEALSLADVLLLLEVYPAGEEPIAGADSRTLGQAIRANGHVDPIGV 433

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           E M+ +   +   L +GDV++   +   G
Sbjct: 434 EDMETIEEVLLGVLQEGDVLLTLGAGDIG 462


>gi|189183854|ref|YP_001937639.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180625|dbj|BAG40405.1| UDP-N-acetylmuramate-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 502

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 157/421 (37%), Gaps = 56/421 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GAG+VV+++ +  +           IP+    ++L  L +  +A         IAI+GS
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAISAKIPIISRAEMLAELMRSKIA---------IAISGS 133

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ++     +     T    G     I           D D+ I E   S    
Sbjct: 134 HGKTTTTALIACIFEACGLHPTVITGG-----IMNNKATNAYLGDGDYFIAEADESDATF 188

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I+     +   IAVIT I   HL  +   + + SA  +    L   G      DD   + 
Sbjct: 189 IK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQN 243

Query: 235 LKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHH 286
           L AK   +  + I ++G  SKNA  Q       +  S  +V+++  +        +V   
Sbjct: 244 LIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTLP 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + I   L  D++        F   +G  +R+         T+ID+ Y
Sbjct: 301 ALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD-Y 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISH 403
             +PA + A I +   I+   +GR IAV           +    +     + +    IS 
Sbjct: 357 AHHPAEIIATIDIARCIADKQQGRVIAVF--QPHRYSRLKQLFSEFTHCFQRVDQLYISQ 414

Query: 404 VWLSGFHV------LALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++ +G         ++L +A+    H  Y      +D L   I   +   D++++  +  
Sbjct: 415 IYDAGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYRQVKPYDIILLMGAGD 474

Query: 455 C 455
            
Sbjct: 475 I 475


>gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489]
 gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007]
          Length = 495

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKANDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|134294648|ref|YP_001118383.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
 gi|166222968|sp|A4JB95|MURC_BURVG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134137805|gb|ABO53548.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
          Length = 465

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 163/443 (36%), Gaps = 49/443 (11%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFG 87
           SR+        A+      GHD    A  +GA  VVV+T + +    +       +P+  
Sbjct: 38  SRNAVTDRL-AALGARIAIGHD---AANIEGANAVVVSTAVRSDNPEVLAARHQRVPIVQ 93

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              +L  L +L            IAI G+ GKTTT  ++   L++              I
Sbjct: 94  RAVMLAELMRLKQG---------IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVI 138

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
           G  L  A     +  G F +  +   +  FL   + P I VIT I   H+  +      +
Sbjct: 139 GGRLISAGANARLGTGDFIVAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARL 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             A  E  + L   G+  +  DD     +         K +  +G S +A  +       
Sbjct: 197 KQAFIEFTQRLPFYGSAVVCVDDPNVRQII----PFISKPVVRYGLSADAQVRAENIDAR 252

Query: 267 SEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +    V  +G+S + VV +  G H  QN L  + I + L    D    AL+ F+    
Sbjct: 253 DGRMHFTVIREGRSPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGR 312

Query: 326 RGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           R +RY       G    + + Y  +P  M A I   +       GRR  VL         
Sbjct: 313 RFQRYGEVPSADGGQYTLIDDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTR 368

Query: 385 SQSFHIDLAEVLSLYNI---SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGL 433
           ++    D   VLS  +    + V+ +G   +A    DAL R++         +  T+D +
Sbjct: 369 TRDCFDDFVNVLSTVDALVLTEVYAAGEAAIATANGDALSRALRTVGKVDPVFVATVDDV 428

Query: 434 FLFIQSSLVDGDVVVVKSSNSCG 456
              +     +GDVV+   + S G
Sbjct: 429 PDALAKVARNGDVVITMGAGSIG 451


>gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
          Length = 457

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 156/419 (37%), Gaps = 40/419 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +VV+T +  +   +   V      L   ++  + A L + A  IA+ G+ GKTTT 
Sbjct: 64  GAEAIVVSTAIPETNPEI---VEAARLGLRRFHRSDINAALLNAAKGIAVAGAHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML +AL             +  I +   +  +  +   G  E  +S   E       +R
Sbjct: 121 SMLGVALDHAG--------ISPTIIIGGEVDVLGGNAKLGKGEYLVSEADESDGSFLKLR 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I   HL ++  +  I  A  E  E ++  G   L +D+     +        
Sbjct: 173 PHIAVVTNIEDDHLDHYGTLANIRKAFREFLENIKPGGHAVLCFDNENVRDIAQTL---- 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
            + + S+     AD++  K +         V  +GK +  V  +  G H   + L T+  
Sbjct: 229 GRKVISYAIDHEADYRAGKIEMHGAGVDFSVLHEGKDLGRVRLNLPGRHNVLDALATVVT 288

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   V+     L++FH   G  +R++         ++D+ Y  +P  +   +    Q
Sbjct: 289 GLSIGLTVEQMAAGLALFH---GAKRRFQTKGRVQDVWVVDD-YAHHPTEIATTLLAARQ 344

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R   +  +    G   ++   D+  +  +Y+     + G     
Sbjct: 345 TKPRRIICAFQPHRYSRTKLLAAEFG--GAFREA---DVLVLTDIYSAGEAPIEGVSGRT 399

Query: 414 LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC---GFYRLINLLLEE 467
           + DA+ +       Y    + +   + +    GD+V+   +      G   L+ LL  +
Sbjct: 400 ILDAVRQTTGQDAVYIPQREDIAAHLAAIAQSGDIVLTMGAGDIWKTG-EELVALLEGK 457


>gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
 gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
          Length = 469

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 105/474 (22%), Positives = 167/474 (35%), Gaps = 68/474 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H+L  AI G  +               R +       AI      GHD    A  + A 
Sbjct: 25  LHNLGYAISGSDLNESATV---------RRLRELGLRVAI------GHD---AAHVQDAD 66

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV+T + A    +       IPV     +L  L +L            IAI G+ GKT
Sbjct: 67  AVVVSTAVRADNPEVLAARARHIPVVPRAVMLAELMRLKRG---------IAIAGTHGKT 117

Query: 121 TTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  ++   L+         IG   N  GV   L +     ++ + E   S    +  L 
Sbjct: 118 TTTSLVASVLAEGGLDPTFVIGGRLNSAGVNAKLGQG----EYIVVEADESDASFLNLL- 172

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               P +AV+T I   H+  +      +  A  +    L   G   L  DD+    +   
Sbjct: 173 ----PVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCVDDAAVRGIM-- 226

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQ 294
                 K I S+G +++A  +    +    Q    V  +       + V  +  G H  Q
Sbjct: 227 --PFVSKPITSYGFAEDAQVRAIDVRAEGAQMHFTVLRRNGVQLPPLAVTLNLPGRHNVQ 284

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM 353
           N L  + + + L  D     +AL+ F     R +RY   A + G    + + Y  +P  M
Sbjct: 285 NALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYGEVAAHHGGHFTLIDDYGHHPVEM 344

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH 410
            A +   +       GRR  VL         ++    D  +VL   +    + V+ +G  
Sbjct: 345 AATL---AAARGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKVLGEADAVLLAEVYAAGEA 400

Query: 411 VLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            L   D   L R++ V       + E +  L   I     +GDV++   + S G
Sbjct: 401 PLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILEMAREGDVLICMGAGSIG 454


>gi|251798403|ref|YP_003013134.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546029|gb|ACT03048.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
          Length = 462

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 168/446 (37%), Gaps = 49/446 (10%)

Query: 44  FAIKGPH-YDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSIPVFGVDDVLGALN 96
            A KG   Y GH+   H   KGA LVV +T          +   L+IPV         L+
Sbjct: 45  LAAKGAQIYIGHE-AEHV--KGADLVVYSTALSKDNVERMAAEELNIPV---------LH 92

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  + ARL +    +A+ G+ GKTTT  M+ + +         I      I    T A+ 
Sbjct: 93  RAQMLARLMNAGKGVAVAGAHGKTTTSSMIALVMEKCDADPTYI--IGGEIVNVGTNAKA 150

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFE 215
               ++ + E   S    +++      P IA++T I P HL N+     ++ +A  +   
Sbjct: 151 GKG-EYVVAEADESDGSFLQY-----HPSIAIVTNIEPDHLENYDGDFGKLKAAYVKFLS 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +++ G   +  DD     L  K  A     + ++G   +++++         +   E+ 
Sbjct: 205 QVKENGKAIVCADDETITELLPKLDADTASKLITYGIDSDSEYKAENISLGDRKVSFEMT 264

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G ++  +     G H   N + T+          D   KA+  F    G  +R++   
Sbjct: 265 HRGTTLGTLELSVPGRHNVYNAMATVITCLEAGLSFDNIAKAIHEF---IGAKRRFQVLG 321

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELSQ 386
                 +ID+ Y  +P  ++A IS              P    R   +L         + 
Sbjct: 322 EVNDILVIDD-YAHHPTEIQATISAAKATGKRIIAVFQPQRYTRTFFLLEQFSRAFPEAD 380

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDG 444
              + + ++ S      +   G H   L + +  + + +  Y  T + + + + + +  G
Sbjct: 381 E--VIITDIYSPAGEQQI--EGVHSRKLVEMIKTNSNANTSYIPTKEEVLVHLTAKVAPG 436

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFPA 470
           D+V+   +     ++  + L +   A
Sbjct: 437 DLVITMGAGDI--WKTADALAKTLKA 460


>gi|320540404|ref|ZP_08040054.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
 gi|320029335|gb|EFW11364.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
          Length = 491

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 137/408 (33%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEADLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +              F I E   S    +      ++P +A+IT I   H
Sbjct: 148 ---PTFINGGLVKAAGTHARLGSSRFLIAEADESDASFLH-----LQPMVAIITNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L         + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELL----PCVGRHITTYGFSND 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  + Q   Q    +  Q K  + V  +  G H A N      + +    D D  +
Sbjct: 256 ADVRIENYHQLGAQGCFTLSRQDKPLITVTLNAPGRHNALNAAAAAAVATEEGIDDDDIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL+ F     R              +    ++ + Y  +P  + A +       P  + 
Sbjct: 316 RALASFQGTGRRFDFLGEFPLATVNGKAGSAMLVDDYGHHPTEVDATLQAARAGWP--DK 373

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHV 424
           R + +          ++  + D A VLS  ++     V+ +G   +   D  AL R+I  
Sbjct: 374 RLVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLEVYAAGETPIPGADSRALCRTIRS 431

Query: 425 H------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                       D +   +   L   D+V+V+ + + G  ++   L E
Sbjct: 432 RGKLDPILVSDADSVPEILAQLLQADDLVLVQGAGNVG--KIARKLAE 477


>gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum
           CFBP2957]
 gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CFBP2957]
          Length = 483

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 159/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  QG FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  M A +   +       GRR  VL         ++    D  +VL   +   ++ V+
Sbjct: 342 HPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFIKVLGTVDGLLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  D DVV+   + S G
Sbjct: 398 SAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVVITMGAGSIG 456


>gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
 gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
          Length = 468

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 154/435 (35%), Gaps = 43/435 (9%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-----------L 92
             + G    G D +    + G  + + +           +    + D            L
Sbjct: 40  VPVSGSDARGSDMVTELRELGGRVHIGHAASNIKNVDTVVVSTAIRDSNPELGEALRQGL 99

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             + + A  A + +  T +A+ G+ GKTTT  MLT+AL       +        +G  L 
Sbjct: 100 RVIPRAAALASVMAGRTGVALAGTHGKTTTTSMLTVALQKCGADPS------YCVGGQLV 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  D   G   +  +   +  FL  ++ P IAV+T + P HL N+     +  + A 
Sbjct: 154 TTGLGADEGAGEVFVAEADESDGSFL--MLAPEIAVVTNVEPDHLDNYGDPRAVYDSFAR 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             E + K+  + +  DD     L   + A G+K + ++G+++ ADF++            
Sbjct: 212 FVERVGKS--MVICADDPGSAALVPIARARGLK-VVTYGEAEGADFRVSGILPDGLGISF 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            V+ +G   EV     G H A N    + +   L    D     L+ F    G  +R+  
Sbjct: 269 AVEGRG---EVRLAVPGRHNALNATAVIAVAMELGVSFDEIRDGLAAFT---GAKRRFEA 322

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHI 390
               G   +  +SY  +P  + A +     +       GR IAV      +   ++ F  
Sbjct: 323 KGEAGGVAVF-DSYAHHPTELAADLRAARDVVASFSGSGRVIAVF--QPHLYSRTRFFAD 379

Query: 391 DLA---------EVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSS 440
           +            VL +Y        G     +   +P     V Y+   + +   +   
Sbjct: 380 EFGVALGLADEAIVLDVYGAREDPEPGVSGALVAGKVPLPPERVTYAPQREAVPALVAGR 439

Query: 441 LVDGDVVVVKSSNSC 455
              GD+V+   +   
Sbjct: 440 ARPGDIVLTMGAGDV 454


>gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
 gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
          Length = 544

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 162/481 (33%), Gaps = 59/481 (12%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--- 72
           G       +  V G+ + ++ I   + F A+ G    G  F + A+ +GA  ++ +    
Sbjct: 41  GQPGSQSSEVVVKGVDLRAQGIVADDLFAALPGARTHGAQFAVDALGRGATAILTDEAGL 100

Query: 73  ---DMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
              +        S+PV    +    L +++     R   K  ++ ITG+ GKTTT  +L 
Sbjct: 101 ELIEAAGKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLE 160

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSH 171
            A++   +    +G+    I      + +                   +D  + E+    
Sbjct: 161 AAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHA 220

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD 229
           L   R     +R  I   T ++  HL      EE   AKA +F+     +     +  DD
Sbjct: 221 LALGR--VDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDD 278

Query: 230 SFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQS-WMEVQ-LQGKSMEVVHH 286
            +   +   +       + +   S   A++++   +   + S   E+    G+S  V   
Sbjct: 279 VWGRRMAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTFELVGPDGQSWPVSLR 338

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N  + L +      D D A++A       +  G+  R    Q F  ++D  Y
Sbjct: 339 LPGRYNVANAALALTVSFAAGLDPDAAVRA---LGTVDVPGRVQRIDRGQSFLAVVD--Y 393

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              PA+++A I+ L    P   GR   V+G   +     ++   +            + +
Sbjct: 394 AHKPAALEAVIATLRNQVP---GRVAVVVGAGGDRDAGKRTLMGEAG----ARGADLLIV 446

Query: 407 SGFHVL--------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +  +                A+         +                   GDVV+V  K
Sbjct: 447 TDDNPRTEDPAKIRASVMQGAIDVPESERGEIREVGDRALAIEQAVRWAQPGDVVLVAGK 506

Query: 451 S 451
            
Sbjct: 507 G 507


>gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae Sd197]
 gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 495

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 167/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S  +  N +      +          + +        
Sbjct: 240 NADDEVGRRWLAK---LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALTTLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|307265084|ref|ZP_07546644.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919882|gb|EFN50096.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 464

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 160/420 (38%), Gaps = 47/420 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP+     +LG + K             IA++GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPIIDRATLLGLIMKKYKYG--------IAVSGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L  +         ++  + V   +  +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVILDGMG--------FDPTVLVGGEVDVLGGNVRVGNSEYFVTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVVN 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQN 295
             +    K I ++G  +++D++ +      +  +  +V  + + M        G H   N
Sbjct: 231 GLN----KNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNIYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKA 342

Query: 356 AISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +                PH   R  ++L D  E  + +    I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADK--IIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S   ++ L     R     Y +  D +  ++  +   GD+V+   + +   Y +  + L+
Sbjct: 401 SSKDLVEL--ISQRGKDALYLKDFDSIVEYLNKNAKAGDLVLTVGAGNI--YEVGEMFLK 456


>gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
 gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 163/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR+ A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  A+ G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIF 165
           TTT ++L      + +T A +G+  N +   L  A                 VD    + 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +    SAK  +F    + G   +
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE-HQVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD        K     +                 +  K       + ++         
Sbjct: 240 NADDEVGRRWLQKLPD-AVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGH 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +       S   P  G   R       G  T++
Sbjct: 299 IDSRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIG---RMEVFSAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A   L+    H +GR   + G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKA---LAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLS-----GFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++     G    A+       L  +                      GD+V+V  K 
Sbjct: 408 VVVITNDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|229514029|ref|ZP_04403491.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
 gi|229349210|gb|EEO14167.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
          Length = 506

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 273 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGERPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|171462988|ref|YP_001797101.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229620049|sp|B1XT10|MURC_POLNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171192526|gb|ACB43487.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 478

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/419 (20%), Positives = 146/419 (34%), Gaps = 56/419 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  N   V +  +  IPV     +LG L +L            IAI G+ GKTTT  ++
Sbjct: 73  AVAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQG---------IAIAGTHGKTTTASLV 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L+         IG   N  G    L R     DF + E   S    ++     + P 
Sbjct: 124 ASVLAEGGLDPTFVIGGKLNSAGANARLGRG----DFIVVEADESDASFLQ-----LFPA 174

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + V+T I   H+      +  +  A  +  + +   G   L  DD+    +         
Sbjct: 175 MEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCIDDANVRDII----PFVS 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--------KSMEVVHHGIGYHMAQNM 296
           + +  +G S +AD +    +    +    V  +           + +  +  G H  +N 
Sbjct: 231 QPVLRYGLSDDADIRAANVRADGTRMHFTVDRRTVRRHGNKPGPLNITLNLPGLHNVRNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKA 355
           L  +GI + L    +   KALS F     R +RY    L+ G    + + Y  +P  M A
Sbjct: 291 LAAIGIATELGVGDEAITKALSEFGGVGRRFQRYGEIPLDSGGSFTLIDDYGHHPVEMSA 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWL 406
            ++      P     R  VL         ++    +  +VL          +Y      +
Sbjct: 351 TLAAARGAYPD----RRLVLAFQPHRYTRTRDCFGEFVQVLRSFDALVLTDVYPAGEAKI 406

Query: 407 SGFHVLAL----------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            G    +L            AL  S  V Y+ ++  +   ++  L DGDV++   + S 
Sbjct: 407 PGADGKSLMKAAIAEEKNSKALLNSAAVAYAASITEMPEKLRQVLKDGDVLITMGAGSI 465


>gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum]
          Length = 464

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 148/427 (34%), Gaps = 51/427 (11%)

Query: 48  GPH-YDGHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLA 99
           G   + GH     A Q GA   VV           +     L IPV    + L  + +  
Sbjct: 51  GARVFVGHR----AEQVGAVDAVVISTAISQENPELLEARRLGIPVVHRGEALAGIMRGF 106

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      +A+ GS GKTTT  M+   L+       C+                   
Sbjct: 107 QG---------VAVAGSHGKTTTTSMIAHVLAHGGLDPTCVVGGRVPGFGG------NAR 151

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V      +  S   +  FL   + PH+AV+T +   HL  +   +++ +A       +  
Sbjct: 152 VGKKNIFIAESDESDGSFL--KISPHVAVVTNVDQEHLDYYQSFDQLKAAFERFLTSVPP 209

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G      DD     +    +A      +++G S  AD            +   V+L+GK
Sbjct: 210 EGLAVACLDDPELSNILPSLNAPH----WTYGFSPAADVVGSDVSAEGLSTSFSVRLRGK 265

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   V +  G H   N L T+ +      + + A +AL  F    G G+R+     +G 
Sbjct: 266 DIGTFVLNVPGVHNVLNALATIAVAHHFGLEAECAREALERF---RGVGRRFTQVGEEGG 322

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFH-I 390
             ++D+ Y  +P  +   ++   Q  P    RR+ V             +   + +F   
Sbjct: 323 IRIVDD-YGHHPTEIGVTLAAARQAYPD---RRLVVAFQPHRFSRTRDLLSRFASAFQLA 378

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVV 448
           D+  +  +Y      ++G     L D +  S     +++     +   + + L  GD+++
Sbjct: 379 DVLVLGEIYGAGESPIAGITGRRLFDEIRTSFENEAYFAGDQSEMISRLMTILKPGDLLI 438

Query: 449 VKSSNSC 455
              +   
Sbjct: 439 TMGAGDV 445


>gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
 gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
          Length = 482

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 146/415 (35%), Gaps = 47/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      +       IPV    ++LG L +             IA+ G+
Sbjct: 80  KGANVIVVSTAIDKENPEIKTAIENRIPVVRRAEMLGELMRYR---------HGIAVAGT 130

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++T  L+          + +    +   L R  ++   G     ++   E  
Sbjct: 131 HGKTTTTSLITCMLAE--------ENMDPTYVIGGLLNRTGMNAALGASRYIVAEADESD 182

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P  AV+T I   H+  +    + +     +  + L   G   +  DD+    +
Sbjct: 183 ASFLHLEPMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGLAVVCGDDANIREI 242

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQ 294
             +      + + ++G +++ D +     Q   Q+   V  + +  + V  +  G H   
Sbjct: 243 MPRIA----RPLLTYGFNEDNDIRAVDVDQDGMQTHFTVLRKEREPLRVTVNQPGLHNVL 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +GI +       +  +AL  F     R +       +G    + + Y  +P  ++
Sbjct: 299 NALAAIGIATDEGVSDASICRALEGFSGVGRRFEVQGEFAIEGGDVKLVDDYGHHPKEVE 358

Query: 355 AAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           A I    Q            PH   R      D  E+             +L +Y     
Sbjct: 359 ATIKAARQSHPDRRLVMMFQPHRYSRTRDCFDDFVEVLSTVDQL-----LLLDVYPAGEK 413

Query: 405 WLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
            + G    +L  ++     V     +  DG L   ++  L   D+++ + + + G
Sbjct: 414 PIVGADSRSLARSIRLRGEVEPILVDAADGNLNQIMRKVLQANDLLLTQGAGNVG 468


>gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 8102]
 gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH
           8102]
          Length = 500

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 151/464 (32%), Gaps = 52/464 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + H LL+ +       +    +  I+ DSR +     F  + G  +DG  F   A++ GA
Sbjct: 4   SLHALLRDVGLELPAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQALEAGA 63

Query: 66  GLVVVNTDMVASIGS-LSIPVFG----VDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              V+       +      PV      V   +G L           +  +I +TG+ GKT
Sbjct: 64  AAAVIGPSAAQELPPAADQPVLVLREPVARSIGELAASY-WGHPCRRMALIGVTGTNGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFGI 164
           TT  ++      + +  A  G+  N        A     V                    
Sbjct: 123 TTTHLIEHLAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAASAGSQLAA 182

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--- 221
            E+    L  ++      R   AV T +   HL     +E    AKA +F      G   
Sbjct: 183 MEVSSHAL--VQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPLLDGDGP 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +  +N DD +   L  +   LG +   S      A+ Q+   +   +     +     S 
Sbjct: 241 SAVVNGDDPWGSRLAEQ---LGGRCWRSSLGDPQAELQMVDLEMTGQGVRGRLLSPAGSG 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFT 340
                 +G     N+L  +G++      +   ++A+  F    GR +R      +     
Sbjct: 298 AFCSPLLGRFNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGRMERVVVNGAESAALP 357

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +   Y   P  ++   + L+   P  +GR + V G     G+  +     +A + +   
Sbjct: 358 TVLVDYAHTPDGLE---NALAASRPFTDGRLVCVFGC---GGDRDRGKRPQMAAIAARL- 410

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              V ++  +                +E  D +   + + +  G
Sbjct: 411 ADRVVVTSDNPR--------------TEDPDQIIADVVAGMPSG 440


>gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CMR15]
          Length = 483

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  QG FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  M A +   +       GRR  VL         ++    D  +VL   +    + V+
Sbjct: 342 HPVEMAATL---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  D DVV+   + S G
Sbjct: 398 AAGEPPIVAADGRALTRALRVAGKIEPIFVEQIEDMPQAILDAAQDNDVVITMGAGSIG 456


>gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 483

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 160/483 (33%), Gaps = 59/483 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNP    +DLL+ +            +  I+ DSR++ PQ  + A +G  +   DF    
Sbjct: 1   MNPPKKLNDLLKGLTA----ATADRDIAAIATDSRALTPQTLWLAARGISHHALDFYNPE 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           +   A              +        + +   L ++A            +I +TG+ G
Sbjct: 57  LHPAAIA------YEPPYANPPADAIACEQLGAHLGEIAARFYDHPARALKLIGVTGTDG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIG------------SYNNHIGVPLTLARM-PVDVDFGIF 165
           K++    L  A  +       IG            +  + + V   LAR     ++    
Sbjct: 111 KSSLVHFLAQA--TGGAMLGTIGYGKLDALEPASHTTPDPLRVQQYLARFRDAGIETVAM 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R     V  HI V T ++  HL     +E+   AKA +F          +
Sbjct: 169 EVSSHALAQGR--VAAVEYHIGVFTNLSRDHLDYHRDMEDYFLAKASLFARPLP--VAVI 224

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------FQLRKWKQCSEQSWMEVQLQGK 279
           N DD+    L  ++       + +     +A        + R      +     ++ + +
Sbjct: 225 NIDDAHGRRLLDENRVHPKTRVIAVSSQNHAHPRAALTLRARDIVLSPDGIAYTLETEAE 284

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + +    +      N+L T   +  L          L+  H   GR +R    L  G  
Sbjct: 285 QVAIQSGLLARFNVDNLLNTAACLLALGTPFAAIPAKLAALHGVPGRAER--IGLGNGAA 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID  Y   PA++    ++L  +  H  G+   V G   +     +      AE  +  
Sbjct: 343 AIID--YAHTPAALA---NILQGVRAHVPGKLWCVFGCGGDRDRGKRPLMAQAAEQYA-- 395

Query: 400 NISHVWLSGFHVLA------LKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +         + D+L    H   +      +    F+   L  GD VV+ 
Sbjct: 396 --DAVVITDDNPRTENPADIIADSLRGMGHREKAWIKRPREEAIRFVLPQLEAGDAVVIA 453

Query: 450 -KS 451
            K 
Sbjct: 454 GKG 456


>gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 167/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV++  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 467


>gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2]
          Length = 466

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 145/376 (38%), Gaps = 30/376 (7%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A L +    +A+ G+ GKTTT  M T+AL +           +    +  
Sbjct: 96  LRILHRSGALASLMAGKRAVAVAGTHGKTTTTSMTTVALQACG--------LDPSFVIGG 147

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            L+    +   G  ++ ++   E      L  P I ++T +   HL  +   E++  A  
Sbjct: 148 VLSTTGTNAHLGTGDVFVAEADESDGSFLLYEPTIGILTNVEADHLDYYGTPEKVREAFV 207

Query: 212 EIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           E   G+    GT+    DD     +  ++ A G   I  +G S++AD +LR+  Q    S
Sbjct: 208 EFCAGIGADGGTVIACADDPGSLDVAQQARAQGTSVIL-YGTSESADVRLREL-QSGLVS 265

Query: 271 WMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              + + G  + + V     G H A N    + +   L ADV  A    S      G  +
Sbjct: 266 EFVLDVPGQAEPLPVALRQPGTHNALNATAAIAVAHSLGADVAKAA---SGLGGYGGTRR 322

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+          +ID+ Y  +P  ++A +S    +    EGR  A+      +   +  F
Sbjct: 323 RFEERGIAAGVRVIDD-YAHHPTELRAVLSAARGV-VTDEGRVWAIF--QPHLYSRTMEF 378

Query: 389 HIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
             +  E         VL ++      + G     + D +P   +V + E+      ++ +
Sbjct: 379 RTEFGEALGLADEVVVLDVFPAREDPVPGVTGALIADRVPHE-NVTFVESFSEAVPYVAA 437

Query: 440 SLVDGDVVVVKSSNSC 455
            +  GD+V+   +   
Sbjct: 438 RVRPGDLVLTLGAGDV 453


>gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli ABU 83972]
          Length = 490

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 160/464 (34%), Gaps = 39/464 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+
Sbjct: 8   WVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEAT 67

Query: 78  IGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            G +     +PV  +  +   L+ L             ++ +TG+ GKTTT ++L     
Sbjct: 68  DGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQ 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            + +  A +G+  N +   +            +                + +S  G ++ 
Sbjct: 128 LLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQH 187

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               ++   +V T ++  HL     +E   +AK  ++      G   +N DD       A
Sbjct: 188 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIINADDEVGRRWLA 246

Query: 238 KSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           K     +        + N      +          + +         E+    +G     
Sbjct: 247 KLPD-AVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   +K  +   P  G   R       G  T++ + Y   P +++
Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALE 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVL 412
            A+        H  G+   V G   +  +  +     +AE  +   +       +     
Sbjct: 362 KALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRA 418

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            + D L   +   Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 419 IINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462


>gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 169/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A  G +     +PV  +  +   L+ L      +   +  ++ +TG+ GK
Sbjct: 61  AAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + ++        E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATAVNYHDSGATIQFDSSWGKGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  GR + +    +      +
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF----SAPGKPAV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALQA---ARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +    ++ M+G    + +++    + DVV+V  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|170700184|ref|ZP_02891202.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
 gi|170134916|gb|EDT03226.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 158/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A +   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +A    DAL R++         +  T+D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVATVDDVPDALAGVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
 gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 168/478 (35%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++    + G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HRCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S     N +      +  +       + +        
Sbjct: 240 NADDEVGRRWLAK---LPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 540

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 160/491 (32%), Gaps = 79/491 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR++     FFA++G H  G  +I  A+  GA  +V   D       + +   
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIV--HDCPLDTYVVGVYYA 83

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V D   AL+  A A         T+I +TG+ GK++T   +   L    K    I +  
Sbjct: 84  RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143

Query: 144 ------------NNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                       +      LT+ R+  +      +F + E     L         V   +
Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----------FLNYDDSFFELLK 236
           AV   +   HL      E+    KA +F  L+    I           L  +D+     +
Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDASAVYFR 263

Query: 237 AKSHALGIKTIYSFGKSKNAD--------------FQLRKWKQCSEQSWMEVQL------ 276
             +H    K  + F +   A+                ++   Q S+   +   L      
Sbjct: 264 EATH----KPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQEP 319

Query: 277 ----QGKSMEVVHHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
               Q  + +V     G   A N+  +  ++  +L   +    + +    P +GR +R  
Sbjct: 320 AQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQR-- 377

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             + Q F  LID  Y   P+S +  +  L+      + R + + G   E     ++    
Sbjct: 378 VDMGQDFEVLID--YAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQ-- 433

Query: 392 LAEVLSLYNISHVWLS----GFH-------VLALKDALPRSIHVHYSETMDGLFLFIQSS 440
              + S Y    V       G         + A  +       +            I S 
Sbjct: 434 -GAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSL 492

Query: 441 LVDGDVVVVKS 451
               D+V++  
Sbjct: 493 ARAQDLVLLLG 503


>gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 506

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 152/429 (35%), Gaps = 41/429 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++   +       V    ++ +  DSR +     F+A KG   DG DF+L A ++GA
Sbjct: 9   TLQEVAAFL--EEDKNVGTCSLSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGA 66

Query: 66  GLVVVNTDMVAS---IGSLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTT 121
             ++ + D   S   +  ++IP+  +   +              SK  +I ITG+ GK+T
Sbjct: 67  AAIICDYDKDPSAEQLKDVTIPLLHLKKGMSVGEFASWFYFSPSSKLRLIGITGTNGKST 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVD-VDFGIF 165
             +++   L+   +  A  G+                   I +   LA    +  D+   
Sbjct: 127 VTQLIAQYLALFNRKCAVFGTLGYGFLPNLKQSSNTTLSAIALQKALAEAVKEGADYAAL 186

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + E R             T +   HL     +E  A AK E    +     + L
Sbjct: 187 EVSSIGVCEGRI--DGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPD-HLCL 243

Query: 226 NYDDSFFELLKAKSHAL------GIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQG 278
           N DD+  + +             G   + S  KS K+A   +   +   +   + +    
Sbjct: 244 NVDDAMGKTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSF 303

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +     +G   A+N L  L ++      +   +   S   P  G   R  C   +G 
Sbjct: 304 GKGDASLSLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICG---RMECFYKEGK 360

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I + Y   P  +++A+      +P   G+   VLG     G+  +     +A    +
Sbjct: 361 PRMIVD-YAHTPDGVESALKAARSHTP--GGKVWCVLGC---GGDRDKGKRPMMAIKACV 414

Query: 399 YNISHVWLS 407
           Y    ++ S
Sbjct: 415 YADKVIFTS 423


>gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 170/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A  G +     +PV  +  +   L+ L      +   +  ++ +TG+ GK
Sbjct: 61  AAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + ++        E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATAVNYHDSGATIQFDSSWGKGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K+ +   P  GR + +    +      +
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVF----SAPGKPAV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALQA---ARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +    ++ M+G    + +++    + DVV+V  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI1]
 gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 55989]
 gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
 gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120]
 gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167]
 gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 163/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR+ A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  A+ G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIF 165
           TTT ++L      + +T A +G+  N +   L  A                 VD    + 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +    SAK  +F    + G   +
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE-HQVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD        K     +                 +  K       + ++         
Sbjct: 240 NADDEVGRRWLQKLPD-AVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGH 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +       S   P  G   R       G  T++
Sbjct: 299 IDSRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIG---RMEVFSAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A   L+    H +GR   + G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKA---LAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLS-----GFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++     G    A+       L  +                      GD+V+V  K 
Sbjct: 408 VVVITDDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|198282524|ref|YP_002218845.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667206|ref|YP_002424714.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226706334|sp|B5ELC2|MURC_ACIF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711856|sp|B7J3V1|MURC_ACIF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198247045|gb|ACH82638.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519419|gb|ACK80005.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 464

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 152/432 (35%), Gaps = 55/432 (12%)

Query: 48  GPH-YDGHDFILHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           G   + GH     A  +GA +VV++         V +   L IPV    ++L  L +   
Sbjct: 50  GARIFSGH---EAANVRGADVVVISSAIPESNPEVQAARELRIPVIRRAEMLAELMRFKQ 106

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     IAI G+ GKTTT  ++   L +        G  +    +   L       
Sbjct: 107 G---------IAIAGTHGKTTTTSLVASILGA--------GGLDPTFVIGGRLKSAGTHA 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
             G  E  ++   E       + P +AV+T I   H+  +   ++ +  A  +  + L  
Sbjct: 150 ALGSGEYLVAEADESDASFLYLSPVMAVVTNIDADHMETYGGSLDNLRGAFLQFLQRLPF 209

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   L  D++    L  +        +  +G   +AD Q R        S   V  +  
Sbjct: 210 YGLAVLCTDEAVVAGLIPELRT----PVLRYGFGADADLQARDVTVQGIGSRFAVWRRVD 265

Query: 280 S-----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           S     ++V     G H   N L  +GI S +     T   AL+ F    G G+R+    
Sbjct: 266 SDYVHWLDVELGIPGRHNVLNALAAIGIASKVGIPESTIATALADF---RGVGRRFELVG 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T++D+ Y  +P  + A I+    + P        V+         +Q+   D   
Sbjct: 323 TFDGITVVDD-YGHHPREIAATIAAARSVWPERP----LVVAFQPHRYSRTQALFADFVS 377

Query: 395 VLSL---------YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
            L+          Y+     L G    AL +A+  + + V +   +      I++ L  G
Sbjct: 378 SLAAADRVILTDIYSAGEKALPGVTGRALAEAMAAQGMSVRFLPDLLTAPQQIRAELPAG 437

Query: 445 DVVVVKSSNSCG 456
            V++   + S  
Sbjct: 438 AVLLTLGAGSIA 449


>gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 164/416 (39%), Gaps = 50/416 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N           +PV    ++L         AR+  + T IAI G+ GKTTT  M
Sbjct: 72  SAIPSNNPEWQFALHKGVPVIHRGEML---------ARMMDRQTGIAIAGAHGKTTTTSM 122

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + + L  +++  T   IG     IG    L        +G + +  +   +  FL  L+R
Sbjct: 123 IALTLVKNNLDPTV-LIGGELTDIGGNAKL-------GYGQYLVAEADESDGSFL--LLR 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+I V+T I   HL  +   E+I  A ++    +   G   L  DD   + +  +     
Sbjct: 173 PNIIVVTNIENDHLDYYKTEEKITEAFSKFIRKIPSDGMAVLCTDDRQLKHMSTQLK--- 229

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
            +   ++  KS +AD+ +R       +S +EV   G  + ++     G H   N L  + 
Sbjct: 230 -RPCKTYSVKSTDADYTIRNMITDGPKSKVEVYENGTLLGILELLVPGLHNISNALAVVA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   +  D D   +ALS F   +G  +R++    +    ++D+ Y  +P+ ++A +    
Sbjct: 289 VGRHIGLDFDKIAEALSTF---KGAQRRFQLIGIEKEVQVVDD-YAHHPSEIRATLKAAR 344

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVL 412
           Q      GR IAV          +Q  +    E            +Y+     + G H  
Sbjct: 345 QA---HAGRIIAVF--QPHRYSRTQHLYEQFGEAFGDADVVIVSDIYSAGEKPIEGVHAG 399

Query: 413 ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN---SCGFYRLINL 463
            +  A+ +     V Y   ++ +   +++ +  GD+V+   +    S G   ++ L
Sbjct: 400 LIVAAVQKNTGREVIYQPGIEQITDCLETIVKHGDLVLTMGAGNIQSAGVELVLRL 455


>gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 482

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 153/452 (33%), Gaps = 34/452 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + G+ +DSR       F A+ G   DG  F+  A  +GA  ++       +   
Sbjct: 15  TTSDPDIAGLCVDSRETGAGFLFAALAGSRADGAGFVADAEARGAAAILAGEGAEIA--- 71

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            ++PV    D   A+  +A          ++AITG+ GKT+         +      A +
Sbjct: 72  TTLPVLRAADPRRAIALMAARFHGAQPEHVVAITGTAGKTSIATFTRQIWARCGLAAASV 131

Query: 141 GSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+                  P+ L R+  +     V     E     + + R     VR 
Sbjct: 132 GTTGVVSPSRDEYGSLTTPDPIALMRLMAELAGEGVTHAAMEASSHGIDQRRL--DGVRL 189

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALG 243
             A  + +   HL     IE   +AK  +F  L   G    +  DD +       + ++G
Sbjct: 190 AAAAFSNLGHDHLDYHPDIESYFAAKMRLFTTLLPKGAPAVIFADDRWSGRAIDVATSVG 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K + + G+  N    L++ +   ++   E++ +G+   VV    G     N L+  G+ 
Sbjct: 250 AK-VMTVGRGGNF-LTLKRLELERQRQIAEIEAEGRIHRVVLPLAGEFQMANALVAAGLA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    A+ AL       G   R   A        +   Y   P +++   +VL+ +
Sbjct: 308 IATGVATADALAALEHLKGAAG---RLDLAGTTADGAPVFVDYAHKPEALE---NVLAAV 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRS 421
            P   GR + V+G   +     +    ++A  L+   I       S        + +  +
Sbjct: 362 RPFTTGRVVVVIGCGGDRDRAKRPMMGEIAARLADIVIVTDDNPRSEEPAAIRAEIMTAA 421

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            +S   GD VV+  K 
Sbjct: 422 NGAREIGDRRAAIREAVASARTGDTVVIAGKG 453


>gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
          Length = 468

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 161/432 (37%), Gaps = 59/432 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GAG +V +T + A    +       IPV     +L  L +L        
Sbjct: 56  GHD---AANIRGAGAIVTSTAVSADNPEVLAARAARIPVVPRALMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++   L++  +  T+   G  N+        AR+    +F +
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGDLDPTFVIGGRLNS----AGANARLGQG-EFIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +  L     P + +IT I   H+  +   +  + SA  E  + L   GT 
Sbjct: 159 VEADESDASFLNLL-----PVMCIITNIDVDHMDTYGHDVARLKSAFIEFTQRLPFYGTA 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
            L  DD     +         + + ++G    A  +    +        +VQ QG +   
Sbjct: 214 VLCSDDPNVREII----PFVSRPVTTYGIESEAQVRALNVRADGTLMRFDVQRQGATGAL 269

Query: 281 --MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCAL 334
             M V  +  G+H   N L  + + + L       +++L+ F+    R  +       A 
Sbjct: 270 PPMTVSLNLPGHHNVLNALAAIAVATELGVPDAAIVESLAAFNGVGRRFTQVGDFPVAAQ 329

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G    + + Y  +P  M A +   +        RRI VL         ++    D   
Sbjct: 330 QGGGTYTVIDDYGHHPVEMAATL---AAARGAWPDRRI-VLAFQPHRYTRTRDCFEDFVR 385

Query: 395 VLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVD 443
           +L   +    + V+ +G   L   D  AL R++ V       + E +  L   I+    +
Sbjct: 386 ILGQADAVLLTDVYPAGEQPLIAADGRALTRALRVAGKVEPVFVEDVAELPQTIRDFARN 445

Query: 444 GDVVVVKSSNSC 455
           GDVVV+  + S 
Sbjct: 446 GDVVVIMGAGSI 457


>gi|187930156|ref|YP_001900643.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12J]
 gi|229620425|sp|B2UCX6|MURC_RALPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187727046|gb|ACD28211.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12J]
          Length = 483

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 98/419 (23%), Positives = 159/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E  + L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGLH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  +G FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGHFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  M A ++      P     R  VL         ++    D  +VL   +    + V+
Sbjct: 342 HPVEMAATLAAARGAFPD----RRLVLSFQPHRFTRTRDCFEDFVKVLGTVDALLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  DGDVV+   + S G
Sbjct: 398 AAGEPPIIAADGRALTRALRVANKIEPVFVEQIEDMPQAILDAAQDGDVVITMGAGSIG 456


>gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           GMI1000]
 gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 483

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  QG FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  M A +   +       GRR  VL         ++    D  +VL   +    + V+
Sbjct: 342 HPVEMAATL---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVY 397

Query: 406 LSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D  AL R++ V       + E ++ +   I  +  D DVV+   + S G
Sbjct: 398 AAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVVITMGAGSIG 456


>gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ATCC 8739]
 gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
 gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC
           8739]
 gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sp. D9]
 gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
 gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli EC4100B]
 gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11]
 gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
          Length = 495

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 167/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|153830363|ref|ZP_01983030.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
 gi|148874170|gb|EDL72305.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
          Length = 403

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 11  QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 61

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 62  SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 113

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 114 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 169

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 170 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 229

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 230 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 288

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 289 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIR 345

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 346 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 390


>gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 457

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 147/400 (36%), Gaps = 40/400 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +      +I +    ++L  L +L            IAI G+ GKTTT  + 
Sbjct: 73  AISDDNPELVEARKRNIAIIPRAEMLAELMRLRQG---------IAIAGTHGKTTTTSLT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        I      IG  L +      +  G + +  +   +  FL  L  P I
Sbjct: 124 ASIFDEAGLDPTVI------IGGRLNVYGANAHLGHGEYLIAEADESDGSFLCLL--PII 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   HL ++   E I SA  +    +   G   +  DD     L  +      + 
Sbjct: 176 NVVTNVDEDHLDHYKTREAINSAFVQFMNNVPFYGLNIVCGDDPGVLELLPQVK----RP 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G +++   +    +     S  +V L  + + EV     G H   N L ++G    
Sbjct: 232 VLTYGFAEDNALRAVPLE-SGRISRFQVWLHDEKLGEVSLPQPGRHNILNALASIGAAME 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +     L  F   +G G+R+     +   T++D+ Y  +PA + A ++   Q+  
Sbjct: 291 VGISFEKCAAGLCGF---KGVGRRFEFKGEKQGVTVVDD-YGHHPAEIAATLATARQV-- 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             EGRRI               F        ++D   +  +Y  S   + G    +L   
Sbjct: 345 -FEGRRIVAAFQPHRFSRTEAHFGEFCKVFNNVDQLLLTEIYAASENPIPGVSGQSLAQG 403

Query: 418 LPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + +  S  V Y +T+D L   +   L +GDV++   + + 
Sbjct: 404 IRQVSSTPVEYFQTLDDLARALPDILQEGDVLLTLGAGNI 443


>gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
          Length = 490

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 163/464 (35%), Gaps = 39/464 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+
Sbjct: 8   WVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEAT 67

Query: 78  IGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            G +     +PV  +  +   L+ L             ++ +TG+ GKTTT ++L     
Sbjct: 68  DGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQ 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            + +T A +G+  N +   +            +                + +S  G ++ 
Sbjct: 128 LLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQH 187

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               ++   +V T ++  HL     +E   +AK  ++      G   +N DD       A
Sbjct: 188 RVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLA 246

Query: 238 KSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           K     +        + N      +  +       + +         E+  H +G     
Sbjct: 247 KLPD-AVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   +K  +   P  G   R       G  T++ + Y   P +++
Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALE 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVL 412
            A+        H  G+   V G   +  +  +     +AE  +   +       +     
Sbjct: 362 KALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRA 418

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 419 IINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462


>gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 472

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 158/412 (38%), Gaps = 43/412 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     +     +P+    ++LG L +    A        IAI+G+ GKTTT  M
Sbjct: 90  AAIHEDNPEFRAARDQGLPMLSRAELLGELMRNYKEA--------IAISGTHGKTTTTSM 141

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT  L          G  +  I V   L  +  ++  G  +L ++   E         P 
Sbjct: 142 LTDIL--------LAGDLDPTISVGGILKDIGGNIRVGGPDLFVTEACEYTNSFLSFYPT 193

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VI  +   HL  F  IE+I  +     E L   G + +N   S  E ++  +  L  +
Sbjct: 194 MEVILNVEEDHLDFFKDIEDIRHSFRLFAEKLPAKGLLVVN---SGIEKVEEITRGLRCR 250

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            + +FGK  ++ +  R        +   ++ +QG+++  +  G+ G H   N L  + I 
Sbjct: 251 -VVTFGKDLSSTYTARNITYDGFARPSYDLVVQGETVTRITLGVTGEHNVYNSLAAIAIA 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L    D  +  L  F    G  +R+         T+ID+ Y  +P  +KA ++     
Sbjct: 310 LELGVGFDAIMSGLGRFT---GTDRRFEKKGEVAGVTVIDD-YAHHPQEIKATLAAARNY 365

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L    E   LS +  + LA++ +      +   G     +
Sbjct: 366 PHRKLWCVFQPHTYTRTRAFLDQFAE--ALSAADEVVLADIYAARETDTL---GVSSRDV 420

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            D + +     HY  + D +  FI  + ++GD+++   +      ++   LL
Sbjct: 421 ADRIEKLGTKAHYIPSFDEIETFILENCMNGDLLITMGAGDI--VKVGEKLL 470


>gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 150/422 (35%), Gaps = 43/422 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+LG L +          +T + I G+ GKT+T  M
Sbjct: 86  AAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+ +           +    +   L +   +   G  E+ ++   E        +P+
Sbjct: 137 SVVAMQAAG--------MDPSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPN 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T + P HL  F   E       +    +   G + +  +D     L  +S   GIK
Sbjct: 189 VAVVTNVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 246 TIYSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           T+  +G +          A   +   +  +E +   + + G+ + V+    G HM  N  
Sbjct: 249 TV-GYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGA 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAA 356
             L    ++  DVD  ++ LS F     R + +       F    I + Y  +P  + A 
Sbjct: 308 AALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAV 367

Query: 357 ISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +S    ++   G+GR I        +   +  F  + A          VL +Y      +
Sbjct: 368 LSAARTRVKAAGKGRVIVAF--QPHLYSRTIEFQKEFAGALSLADAAVVLEIYGAREQPV 425

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            G     + DA+  +I V Y      +   I       D+V+   + S       +++ L
Sbjct: 426 DGVSSEIITDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQL 483

Query: 465 LE 466
             
Sbjct: 484 QN 485


>gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
 gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
          Length = 495

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 497

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 154/464 (33%), Gaps = 52/464 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---G 79
           P   V G+++  +   P + F A+ G    G  +   AV +GA  V+ +    A I   G
Sbjct: 17  PDVQVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAEIASRG 76

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +  +PV    D    L +LA     R      +I +TG+ GKTTT  ++   L +  +  
Sbjct: 77  APDVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRVA 136

Query: 138 ACIGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    I                   L    +   VD  + E+    L   R     
Sbjct: 137 GLIGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEVSSHALTLGR--VDG 194

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFELLKAKS 239
           V   +   T ++  HL     +E+   AKA +F+    T      +  DD +   + A++
Sbjct: 195 VSFAVGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARA 254

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +   +  AD++  + +     +  ++ V   G    +     G +   N L
Sbjct: 255 RRP-----VTVSTTGPADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCL 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + ++  +    + A             G+       Q F  L+D  Y   P +++A +
Sbjct: 310 LAIALLDAVGVSPEQAAPG---VRDATVPGRLESVDRGQPFLALVD--YAHKPGALRAVL 364

Query: 358 SVLSQISPHGEGRRIAVLG-----DMCE---MGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             L +      GR   V G     D  +   MG ++     DL  V              
Sbjct: 365 QTLRE---QCTGRLAVVFGAGGNRDQGKREPMGRVAAEL-ADLVVVTDDNPRDEDPAV-I 419

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               L  A      V                   GD+V++  K 
Sbjct: 420 RAAILAGAAGARAEVVEIGDRRAAIGHAAGWARAGDIVLIAGKG 463


>gi|297519212|ref|ZP_06937598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli OP50]
          Length = 218

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 13/224 (5%)

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    +  
Sbjct: 1   KVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSM 60

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A +D     L+      GR    + A NQ    L+D+SYNAN  SM AA+ VL+++ 
Sbjct: 61  SVGATLDAIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP 117

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   S   
Sbjct: 118 ----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVG 170

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 171 EHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 214


>gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 460

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 149/430 (34%), Gaps = 45/430 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLG---------ALNKLAVAARLRS 106
                KGA + + +T    +   + +       D+V            L++  + ARL +
Sbjct: 44  EKLAAKGAKIYIGHTPEHIAGADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLN 103

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   IA+ G+ GKTTT  M+ + +           + +    +   +  +  +   G  E
Sbjct: 104 ERKGIAVAGAHGKTTTSSMIALVMERC--------NVDPTYIIGGEITNLGTNAKAGKSE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P   ++T I   HL N+      + SA  +    +   G   +
Sbjct: 156 FVVAEADESDGSFLQYHPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD     +  +        + ++G    AD+     +    +    +  +G ++  + 
Sbjct: 216 CADDQNIREMLPQLQT----RVITYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N + T+          D     +  FH   G  +R++  L +G   LI +
Sbjct: 272 LSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFH---GAKRRFQV-LGEGNDILIID 327

Query: 345 SYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            Y  +P  ++A IS              P    R   +L         S++  + + ++ 
Sbjct: 328 DYAHHPTEIEATISAARATGKRIIAVFQPQRYSRTFFLLDAFSR--AFSEANEVIITDIY 385

Query: 397 SLYNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           S      +  +G H   L D +    + +  Y  T + +   ++  L  GD+V+   +  
Sbjct: 386 SPAGEKQI--AGVHSSKLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVLTMGAGD 443

Query: 455 CGFYRLINLL 464
              ++  + L
Sbjct: 444 I--WKAGDAL 451


>gi|262189738|ref|ZP_06048096.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034382|gb|EEY52764.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 11  QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 61

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 62  SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 113

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 114 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 169

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 170 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 229

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 230 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 288

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 289 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 345

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 346 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 390


>gi|119505119|ref|ZP_01627195.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
 gi|119459101|gb|EAW40200.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
          Length = 478

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 148/417 (35%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  NT  + +     IPV    ++L  L +             IA+ G+ GKTTT  +
Sbjct: 83  SAIPSNTPELIAARQARIPVVPRAEMLAELMRYRQG---------IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L           T+   G  NN      + AR+     + I E   S    +  L     
Sbjct: 134 LASVFGEAGEDPTFVIGGLLNN----AGSNARLGAG-QYLIVEADESDASFLHLL----- 183

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P ++V+T +   H+ ++   I     A  +    L   G   L  DD   + L  +    
Sbjct: 184 PMVSVVTNVEADHMDHYAGDIGNYEQAFLDFLHNLPFYGLAILCLDDPGVQRLLPQI--- 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTL 300
             + + ++G+   AD+ +        Q+   +       S+ +  +  G H A N     
Sbjct: 241 -TRRVVTYGRDSEADYCVSSVAVSGLQTRFLLNRPRGRSSLSINLNMPGEHNALNAAAAA 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + + L    D     LS F     R         +G    + + Y  +P+ ++A ++  
Sbjct: 300 AVATELGLADDAIENGLSQFSGVGRRFSPLGEVAWRGGVVQMIDDYGHHPSEVRATLNAA 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHV 411
               P    R + V          ++ F+ D   VLS         +Y+     ++G   
Sbjct: 360 RAAFPGQ--RIVMVF--QPHRFSRTRDFYEDFVAVLSDCDLLVLLDVYSAGEDHIAGADA 415

Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +L  ++ +  +I   ++  +  +   +   L  GD+++ + + + G  +L   L E
Sbjct: 416 RSLARSIRQRGAIDPVFAPDIKSVPAVLCDVLEPGDLLLTQGAGNIG--QLARQLAE 470


>gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 521

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 153/475 (32%), Gaps = 43/475 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L  I G  +       V+  S+DS++IA    F A+ G    G  F     +  A L   
Sbjct: 8   LATIGGGRVIGDDSVTVSACSLDSKAIAAGGLFAALPGTRVHGAQFAGD-TEAAAILTDE 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTI 128
                        P+  V+D+   L  +A           T++ +TG+ GKTTT  +L  
Sbjct: 67  AGLQHLQEAGERRPIIVVEDIRAVLGLIAAEIYEHPTEHLTVLGVTGTSGKTTTSYLLEA 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHL 172
            L         IG+    I       ++                   V   + E+    L
Sbjct: 127 GLLHAGHKVGLIGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVVMEVSSHAL 186

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
              R      +  +   T ++  HL     +E+  +AKA +F+G +      +  DD + 
Sbjct: 187 ELGR--VRGTQFDVGGFTNLSQDHLDFHPTMEDYFAAKAALFDGAQAASAAVICVDDDWG 244

Query: 233 ELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQ-SWMEVQLQGKSMEVVHH 286
           + +  +     + T+ S    + A+        R+          +E+   G++      
Sbjct: 245 KRMAQQVAGKPL-TLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGETYSFELP 303

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N  +  G+ + +  D +T +            G+    +  Q F  ++D  Y
Sbjct: 304 MPGKFNIANAALAAGMAAAVGVDTETFLNG---VERVAVPGRMESISRGQDFVAVVD--Y 358

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------LSQSFHIDLAEVLSLY 399
              PA++ A +  L        GR   V+G   +           + +   DL  V    
Sbjct: 359 AHKPAAIAAVLDTLRGQLSETGGRLGVVVGAGGDRDSSKRPLMGAAAAERADLVVVTDDN 418

Query: 400 NISHVW-LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S         V+A      ++  +    +       +      GD ++V  K 
Sbjct: 419 PRSEDPAAIRAAVMAGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKG 473


>gi|314934152|ref|ZP_07841513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653057|gb|EFS16818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 210

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 11/220 (5%)

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + S G   +           +E     +             +G H  +N  + + I   L
Sbjct: 1   LISVGLGNSNTLVCHVDDIETEGIAFTIN---DKESFTLPILGTHNMKNATIAIAIGHEL 57

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +T    ++       R +R++   N    T+I+++YNA+P SMKAAI  LS +   
Sbjct: 58  GLSYETIKDNINHVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM--- 111

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VH 425
            EGR+I +L D+ E+GE SQS H ++   L+   I  ++  G     + +     +    
Sbjct: 112 -EGRKILILADVLELGENSQSMHEEVGAYLNNKTIEVLYTYGDEARFIFNTGQNEVTTAQ 170

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + +    L   +++ + + D ++VK S       ++  L+
Sbjct: 171 HFDDKSELIKELKTIVKENDKILVKGSRGMKLEEVVEALI 210


>gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella boydii ATCC 9905]
          Length = 495

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
 gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
          Length = 538

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 126/420 (30%), Gaps = 59/420 (14%)

Query: 27  VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           V G +  DSR + P + F A  G   D   F+  A+  GAG  +V      +    S  V
Sbjct: 18  VTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVERLGAEAYAFSSDKV 77

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               ++  A   +A A       +  ++A+TG+ GKT+T   L  ALS++K         
Sbjct: 78  AAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTSTAWWLAQALSNLKLVTPIPCGL 137

Query: 144 NNHIGVPLTL---------------------------------------ARMPVDVDFGI 164
              +G+                                            R  VD  F  
Sbjct: 138 VGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLTTPDPVLLQQALRRFVDRGFQA 197

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             L  S +G      +      A+ T     HL     +      KA +F+      +  
Sbjct: 198 CALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAMAAYWQVKASLFQW-PGLQSAV 256

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ------- 277
           +N DD     L        +  +++      A  Q       +      V          
Sbjct: 257 INIDDPQGAELAETLRG-KLLDVWTVSCVAEARLQACDIVHDAPGLRFTVLEHGPDGANG 315

Query: 278 ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+   +    IG +   N+L  +  +  L   +   + + +      GR + +   
Sbjct: 316 PGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLAAVVASCADLTAVPGRMECW--- 372

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  L    Y   P ++  A+  L  ++    GR   V G   +     +     +A
Sbjct: 373 -GAPGQPLAAVDYAHTPDALGKALQALRPLADQRGGRLWCVFGCGGDRDTAKRPLMGAIA 431


>gi|157369007|ref|YP_001476996.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia proteamaculans
           568]
 gi|167017284|sp|A8G9S8|MURC_SERP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157320771|gb|ABV39868.1| UDP-N-acetylmuramate--alanine ligase [Serratia proteamaculans 568]
          Length = 492

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 142/418 (33%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPELVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD ++  ++Q   Q    +  Q K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVRIESYRQVGPQGHFTLSRQDKPLMTVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               D    ++AL+ F     R              +    ++ + Y  +P  + A +  
Sbjct: 306 EEGIDDADILRALAGFQGTGRRFDFLGEFPLEPVNGKSGSAMLVDDYGHHPTEVDATLKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                P  + R + V          ++  + D A VLS  ++     V+ +G   +   D
Sbjct: 366 ARAGWP--DKRLVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETAIPGAD 421

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L R+I              D +   +   L   D+V+V+ + + G  ++   L E
Sbjct: 422 SRSLCRTIRSRGKLDPILVSDADTVPETLAQLLQADDLVLVQGAGNVG--KVARKLAE 477


>gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
 gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
          Length = 458

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 149/404 (36%), Gaps = 45/404 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + + +A+  + +IPV    ++LG +        + +  T + ++G+ GKTTT  M
Sbjct: 77  AAIHNDNEELAAARAKNIPVITRAELLGEI--------MTNYKTAVGVSGTHGKTTTTSM 128

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           LT  L   S+  T   +G     I   L +       D  + E        + F      
Sbjct: 129 LTEILVNGSLDPTV-SVGGILPSIHGNLRIG----HSDNFVTEACEYTNSFLSFF----- 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +I  I   HL  F  I +I ++       L + G + +N D    E +   +    
Sbjct: 179 PTIEIILNIEEDHLDFFKDINDIRNSFGRYVRLLPENGLLVINNDIDNVEEIYKNAAC-- 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
              + + GK+ +AD+               ++  QG ++  +     G H   N L  + 
Sbjct: 237 --PVITVGKTPDADYTADNISFDEFGCPSYDLIRQGNTIGRIALSVPGIHNVYNSLAAIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D+ T I +L  FH   G  +R++       FT+ID+ Y  +PA + A I+   
Sbjct: 295 VAIHLGIDISTIIDSLKGFH---GTDRRFQKKGTVNGFTIIDD-YAHHPAEINATINSAM 350

Query: 362 Q---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A L D  ++ + +     DL  +  +Y        G    
Sbjct: 351 NYPHKKLVIIFQPHTYTRTKAFLKDFADVLKRA-----DLVILPDIYAARETDTLGISSK 405

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + D +        Y    D +   I      GD+V+   + + 
Sbjct: 406 DIADLINAAGTECIYEPDFDKICQIILDRCRKGDLVITMGAGNV 449


>gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella dysenteriae CDC 74-1112]
          Length = 495

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 166/478 (34%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S     N +      ++           +        
Sbjct: 240 NADDEVGRRWLAK---LPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFSSSWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H IG     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 409

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
 gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
          Length = 471

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 165/454 (36%), Gaps = 45/454 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F AI G   DG  +I  A+ +G   V+   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   L+KL      +  +   ++ +TG+ GKTTT ++L     ++ +T A +G+  
Sbjct: 62  YLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  VD       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYS 249
            ++  HL     +    +AK  +F   +      +N DD        +   A+ +     
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLGQLPQAVAVSMEGQ 240

Query: 250 FGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                N               + +         ++    +G     N+L+ L  +  L  
Sbjct: 241 VPTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLLSLGY 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   +       P  GR + +    N      +   Y   P +++ A   L+    H +
Sbjct: 301 PLAQLLATAPNLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAARLHCK 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422
           G+   V G   +  +  +     +AE L+      V ++  +  +      + D L   +
Sbjct: 354 GQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQAIVADILSGLL 409

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
              ++  + G    + S++    + DVV+V  K 
Sbjct: 410 DAGHALAIHGRAEAVTSAIMQAKEEDVVLVAGKG 443


>gi|269468108|gb|EEZ79818.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 471

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 145/407 (35%), Gaps = 43/407 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-K 135
               L+IP+    ++L  L +             IA+ G+ GKTTT  ++   LS  +  
Sbjct: 90  KARELNIPIVPRAEMLSELMRFRFG---------IAVAGTHGKTTTTSLIAHILSEARLD 140

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               IG   N  G+   L     + D+ I E   S    +      ++P ++VIT I   
Sbjct: 141 PTYIIGGILNSSGINAKLG----ESDYLIAEADESDASFLH-----LQPMLSVITNIDQD 191

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           H+S +    + +  A       L   G   L  DD     +    H    + + ++G   
Sbjct: 192 HMSTYGNDYQNLKDAFVSFTSNLPFYGACVLCMDDVGATDIMNNIH----RPLITYGFDS 247

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             D + +  KQ   Q   +V      K   V  + IG H   N L  + I   L   V  
Sbjct: 248 KVDIRAKNIKQHGMQMHFDVVCDKYNKPFSVELNLIGKHNILNTLAAIAIACELKIKVSA 307

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              AL+ F     R + +          L+ + Y  +P  + A    L    P+   R +
Sbjct: 308 IQSALNNFSGVARRLEHHGTLNINNKQVLLFDDYGHHPNEINAVFESLQNTYPNK--RLV 365

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR--S 421
            +          ++    D + VLS          Y  + + ++  +  +L  A+ +  S
Sbjct: 366 VIF--QPHRYTRTRDLFDDFSRVLSKADALILLEIYPANELSIARINSSSLASAIRKRSS 423

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +     +    +   + + + + DVV+   +       L+ LL +++
Sbjct: 424 LDPVVIKNSKEILTVLPNIIKNNDVVLTLGAGDVH--TLVGLLADKY 468


>gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
          Length = 444

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 165/439 (37%), Gaps = 46/439 (10%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F   +  H  G D +++     +  +  +     +   L+IPV         L++  + 
Sbjct: 36  IFIGHEAEHVKGADLVVY-----STALSKDNVERKAAEELNIPV---------LHRAQML 81

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           +RL +    +A+ G+ GKTTT  M+ + + + K     I      I    T A+     +
Sbjct: 82  SRLMNAGKGVAVAGAHGKTTTSSMIALVMETCKIDPTYI--IGGEIVNVGTNAKAGKG-E 138

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
           + + E   S    +++      P IA++T I P HL N+     ++  A  +    ++  
Sbjct: 139 YVVAEADESDGSFLQY-----HPTIAIVTNIEPDHLENYEGDFNKLKEAYVQFLHQVKPD 193

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           G   +  DD+  + +        ++   I ++G  + A+++    +    +    +   G
Sbjct: 194 GKAIVCIDDTNLQEMLPSLRGGALRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDG 253

Query: 279 KSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +++  V     G H   N + T+          ++  +A+ +F    G  +R+     + 
Sbjct: 254 ETLGNVELSVPGRHNVYNAMATIITCLEAGLSFESVAEAIRLF---RGAKRRFHVLGEKN 310

Query: 338 FFTLIDESYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
              +ID+ Y  +P  ++A IS              P    R   +L          ++  
Sbjct: 311 DILVIDD-YAHHPTEIQATISAAKATGKRIVAVFQPQRYTRTYFLLEQFSC--AFGEADE 367

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + + ++ S      +   G H   L + +    + +  Y  T + +   + +S   GD++
Sbjct: 368 VIITDIYSPAGEQQI--EGVHSRKLVEMIVQNSNANTAYVPTKEEVLERLIASKKPGDLI 425

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +   +     +++   L E
Sbjct: 426 ITMGAGDI--WKVAAALAE 442


>gi|227014294|gb|ACP10504.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 506

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 273 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum]
          Length = 486

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 150/422 (35%), Gaps = 43/422 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+LG L +          +T + I G+ GKT+T  M
Sbjct: 86  AAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+ +           +    +   L +   +   G  E+ ++   E        +P+
Sbjct: 137 SVVAMQAAG--------MDPSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPN 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T + P HL  F   E       +    +   G + +  +D     L  +S   GIK
Sbjct: 189 VAVVTNVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 246 TIYSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           T+  +G            A   +   +  +E +   + + G+ + V+    G HM  N  
Sbjct: 249 TV-GYGTRDAVQAHPEVPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGA 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAA 356
             L    ++  DVD  ++ LS F     R + +       F    I + Y  +P  + A 
Sbjct: 308 AALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAV 367

Query: 357 I-SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +    +++   G+GR I        +   +  F  + AE         VL +Y      +
Sbjct: 368 LRRCATRVKAAGKGRVIVAF--QPHLYSRTMEFQKEFAEALSLADAAVVLEIYGAREQPV 425

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            G     + DA+  +I V Y      +   I       D+V+   + S       +++ L
Sbjct: 426 DGVSSEIITDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQL 483

Query: 465 LE 466
             
Sbjct: 484 QN 485


>gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 162/427 (37%), Gaps = 53/427 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+     +L  L +L          
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQG------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++              IG  L  A     +  G F + 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFIVA 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
            +   +  FL   + P I VIT I   H+  +      +  A  E    L   G   L  
Sbjct: 160 EADESDASFLN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286
           DD   + +         K I  +G + +A  +    +    +     ++     +++  +
Sbjct: 218 DDPNVKEIL----PFVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDITLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL------NQGFFT 340
             G H  QN L  + I + L        +AL+ F+    R +RY            G +T
Sbjct: 274 LPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQAAGTYT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+ Y  +P  M A +   +       GRR  VL         ++    D  +VLS  +
Sbjct: 334 LVDD-YGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVD 388

Query: 401 I---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
               + V+ +G   +   D  AL R++ V       + +T+D +   + + + DGDVV+ 
Sbjct: 389 ALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAVVRDGDVVIT 448

Query: 450 KSSNSCG 456
             + S G
Sbjct: 449 MGAGSIG 455


>gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
          Length = 495

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  TAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
 gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
          Length = 472

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 152/400 (38%), Gaps = 38/400 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    + L AL +            +  I G+ GKT+T  ML
Sbjct: 84  AIKEDNPELVAARERGIPVLHRAEALAALMEGHR---------VACIAGTHGKTSTTSML 134

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T+AL        C    +  IG  L  +        G   +  +   +  FL++   P +
Sbjct: 135 TVALQH------CRLDPSFAIGGDLNESGANAHHGQGGIFVAEADESDGSFLSY--SPSV 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I P HL +    +   +   +    +E  GT+ +  DD     L  ++ A G++ 
Sbjct: 187 AVITNIEPDHLDHHGTADAYHAVFHDFVRRIEPGGTLIVCADDEAASELATRAEADGVR- 245

Query: 247 IYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  +G++    AD ++  +    +   + + L+G+ + +     G HMA N +  L    
Sbjct: 246 VLRYGRAATGEADARVLDYSPGEDGGTVRIVLRGEQLRMGVAVPGEHMAFNAVAALLAGL 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L AD++  ++ L+ F    G  +R+      G   + D+ Y  +P  + A +  + Q +
Sbjct: 306 ELGADLEGLVEGLAAFG---GVRRRFEFKGRAGDVRVYDD-YAHHPTEVSAQLRAVRQAA 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLSGFHVLALK 415
               GR + V      +   +++F           D   VL +Y        G     + 
Sbjct: 362 GR--GRVVVVF--QPHLYSRTRAFAAEFAEALGLADEVVVLDVYGAREDPEPGVTGELVA 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + +  + HY    D     +      GDVVV   +   
Sbjct: 418 SRI-KGANAHYEPAFDRAVSLVADLAKPGDVVVTMGAGDV 456


>gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
 gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
          Length = 471

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 173/455 (38%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S+S    +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ +T A +G+  
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  VD       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA---KSHALGIKTI 247
            ++  HL     +    +AK  +F   +      +N DD       +   ++ A+ +++ 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLSQLPQAVAVSMESQ 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              G  K      RK +     + +         ++    +G     N+L+ L  +  L 
Sbjct: 241 VPTGW-KGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLSLG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   + A     P  GR + +    N      +   Y   P +++ A   L+    H 
Sbjct: 300 YPLAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
           +G+   V G   +  +  +     +AE L+      V ++  +  +      + D L   
Sbjct: 353 KGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQAIVADILSGL 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +   ++  + G    + S++      DVV++  K 
Sbjct: 409 LDAGHALAIHGRAEAVTSAIMQAKADDVVLIAGKG 443


>gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia
           coli]
          Length = 495

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 167/476 (35%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +  A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R +     G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMKVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|15642397|ref|NP_232030.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153803321|ref|ZP_01957907.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|153822230|ref|ZP_01974897.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227082523|ref|YP_002811074.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229512266|ref|ZP_04401745.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229519402|ref|ZP_04408845.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229528613|ref|ZP_04418003.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229607044|ref|YP_002877692.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254849522|ref|ZP_05238872.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297581027|ref|ZP_06942952.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|298500240|ref|ZP_07010045.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
 gi|9656973|gb|AAF95543.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|124121139|gb|EAY39882.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|126520240|gb|EAZ77463.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227010411|gb|ACP06623.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229332387|gb|EEN97873.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229344091|gb|EEO09066.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229352231|gb|EEO17172.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229369699|gb|ACQ60122.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845227|gb|EET23641.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297534853|gb|EFH73689.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|297540933|gb|EFH76987.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
          Length = 506

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 273 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 537

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 137/373 (36%), Gaps = 33/373 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR + P + + A+ G +  G  F   A   GA   + +      + +  +P  
Sbjct: 43  VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGADLVAAAGLPAL 102

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VDD    L  LA     R     T + +TG+ GKTTT  ++   L S   T   +G+  
Sbjct: 103 VVDDPRAVLGDLAARIHGRPGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGLLGTVE 162

Query: 145 NHIGVPLT---------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             I                    LARM    V     E+    L  ++     +   +A+
Sbjct: 163 TRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGCALEVSSHAL--VQHRVDGLVLDVAL 220

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            T ++  HL     +EE  +AKA +F     + G +++  D +       +        +
Sbjct: 221 FTNLSQDHLDFHGSMEEYFAAKASLFTPAHARRGVVWVEEDGAPDASWGRRLARRASVPV 280

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVH--HGIGYHMAQNMLMTLGIV 303
            + G + +AD+++   +     S   +   L G  +E+       G     N  +    V
Sbjct: 281 VTVG-AGDADWRVTDVRTGRAGSTFHLSGTLPGGPVELDLTCPLPGDFNVANAALAAVAV 339

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L          L+      GR +     + +    L+   Y   P ++   +  L  I
Sbjct: 340 LHLGPAPAVVAAGLAAAEGVPGRMQ----TVVRDGAPLVVVDYAHTPDALDRVLRTLRGI 395

Query: 364 SPHGEGRRIAVLG 376
           +P   GR +AV G
Sbjct: 396 TP---GRLVAVFG 405


>gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1357]
          Length = 490

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 163/464 (35%), Gaps = 39/464 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+
Sbjct: 8   WVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEAT 67

Query: 78  IGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            G +     +PV  +  +   L+ L             ++ +TG+ GKTTT ++L     
Sbjct: 68  DGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQ 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            + +T A +G+  N +   +            +                + +S  G ++ 
Sbjct: 128 LLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQH 187

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               ++   +V T ++  HL     +E   +AK  ++      G   +N DD       A
Sbjct: 188 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLA 246

Query: 238 KSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           K       ++     + N      +          + +         E+  H +G     
Sbjct: 247 KLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   +K  +   P  G   R       G  T++ + Y   P +++
Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALE 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVL 412
            A+        H  G+   V G   +  +  +     +AE  +   +       +     
Sbjct: 362 KALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRA 418

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 419 IINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462


>gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 325

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 108/315 (34%), Gaps = 21/315 (6%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DS  + P + F  + G H DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++F          +N DD F   L  +        +
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAW-PDLRCRVINLDDDFGRRLAGEEQ---DSEL 250

Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++     +A    R+ +         +        +    +G     N+L  +G +  L
Sbjct: 251 ITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGL 310

Query: 307 TADVDTAIKALSVFH 321
              +   ++ L    
Sbjct: 311 GYPLGDILRTLPQLQ 325


>gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus opacus B4]
          Length = 524

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 177/496 (35%), Gaps = 60/496 (12%)

Query: 2   NPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            P+ T    L A+ G  +    G      V G+ + ++ I   + F A+ G    G +F 
Sbjct: 11  QPVRTTVSALAALAGARVEAPSGTAEHVIVTGVDLRAQGIVEGDLFAALPGARAHGAEFA 70

Query: 58  LHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAV--AARLRSKATIIAI 113
             A+ +GA  ++ +   +A + +L    PV   DD  G L +L+     R   K  +I I
Sbjct: 71  ADALDRGATAILTDEAGLALVSALGTDAPVLVHDDPRGVLGELSATIYGRPSEKMQVIGI 130

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLARMPVDV-------- 160
           TG+ GKTTT  ++  AL++  +T   +G+         +   LT    P           
Sbjct: 131 TGTSGKTTTSYLVEGALNAAGRTTGLVGTIETRMSGRRVPSALTTPEAPQLHALFAVMLE 190

Query: 161 ---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D  + E+    L   R     VR  +   T ++  HL      E+  +AKA +F   
Sbjct: 191 QGIDTVVMEVSSHALSLGR--VDGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAAE 248

Query: 218 E--KTGTIFLNYDDSFFELLKAKSHALG--IKTIYSFGKSKNADFQLRKWKQCSEQS--W 271
                    +  DD +   +   +      + T+ +  ++  A +        +  S  +
Sbjct: 249 SSVHAQHAVICVDDVWGRRMAEVARGAHSIVTTVATTPETGGAVWTAGPATVSASGSQKF 308

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +G +++V     G +   N  + + + ++L  D   A+   +     +  G+  R
Sbjct: 309 ALTTAEGTTLDVELRLPGQYNVANASLAVALCAVLGVDPRDAV---AGIAGVDVPGRVQR 365

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               Q F  ++D  Y   PA+++A I+ L + +    GR   V+G     G    +    
Sbjct: 366 IDRGQDFLAVVD--YAHKPAAVEAVIATLREQA---RGRVAVVVG----AGGDRDAGKRP 416

Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFI 437
           L    +      + ++           ++ A+              V             
Sbjct: 417 LMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGVPESERGQVWEVADRAKAIADA 476

Query: 438 QSSLVDGDVVVV--KS 451
                 GDVV+V  K 
Sbjct: 477 VGWAQAGDVVLVAGKG 492


>gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
 gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
          Length = 486

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 142/419 (33%), Gaps = 45/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAIAADNPEIIAAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VTSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  K      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELLPKV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S++AD ++  ++Q   Q    +  QGK  + V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSEDADVRVADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D +  ++AL  F     R         +    +    ++ + Y  +P  + A I 
Sbjct: 305 TEEGIDDEAILRALVRFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGF 409
                 P  + R + +          ++  + D A VLS          Y      + G 
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAGEAPIPGA 420

Query: 410 HVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +L   +     +       ++ L   +  +L   D+V+V+ + + G  +L   L E
Sbjct: 421 DSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGNIG--KLARRLAE 477


>gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
 gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
          Length = 477

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 147/429 (34%), Gaps = 55/429 (12%)

Query: 56  FILHAVQKGA--------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q  A          V  +   V +     IP+     +L  L +L         
Sbjct: 54  FVGHAAQHVADADAVVTSTAVKADNPEVLAARDKHIPIVPRAVMLAELMRLKRG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IAI G+ GKTTT  ++   L+      T+   G  N+        AR+    +F + 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNS----AGANARLGQG-EFIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P ++V+T I   H+  +      +  A  +    +   GT  
Sbjct: 160 EADESDASFLNLL-----PVLSVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           L  DD     +    +      I S+G   NA  +    +    Q     Q +       
Sbjct: 215 LCTDDPAVREVADTVNC----PITSYGFGDNAQVRAVNVRAVGGQMHFTAQRRNGVVLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           +EVV +  G H   N L  + + + L       +KAL+ F     R +RY       G  
Sbjct: 271 LEVVLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEFKGVGRRFQRYGEIPAKGGGT 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + + Y  +P  M A +S      P        VL         ++    D  +V+   
Sbjct: 331 FTLIDDYGHHPVEMAATLSAARGAFPGQR----LVLAFQPHRYTRTRDCFEDFVKVIGES 386

Query: 400 N----ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
                ++ V+ +G   +   D   L R++ V       + + +  +   I      GDVV
Sbjct: 387 ADAVLLAEVYAAGESPIVAADGRSLTRALRVAAKVEPVFVDDIAAMPQTILDLARAGDVV 446

Query: 448 VVKSSNSCG 456
           +   + S G
Sbjct: 447 MCMGAGSIG 455


>gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
 gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
          Length = 520

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 168/490 (34%), Gaps = 56/490 (11%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P+    DL   +   ++G    G    G+++ S  + P + F A+ G    G  F   AV
Sbjct: 14  PVRRVEDLAADLDLVTVGAPAAGLTFTGVTMSSTDVEPGDLFVAVPGLKVHGARFAADAV 73

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
            +GA  V+ + D VA++    +PV    D                 S+   + +TG+ GK
Sbjct: 74  ARGAVAVLTDDDGVAAVPP-DVPVLVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGK 132

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI------------GVPLTLARMPVDVDFGI--- 164
           TTT   +  AL +     A +G+    I              P+  A + V  + G    
Sbjct: 133 TTTTYFVDAALRAHHARTAVLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGAL 192

Query: 165 -FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L   R L    R  +   T +   HL     +E     KA +F   +    +
Sbjct: 193 TTEVSSHALALGRVL--GTRFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGV 250

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQG 278
            +  DD++   L  ++ A+ ++T+ +   +  A                  S   ++   
Sbjct: 251 VV-VDDAWGRRLAEEA-AIPVETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPD 308

Query: 279 KSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  V H    G     N  + + +       + TAI+A+   H   GR +R        
Sbjct: 309 GARHVAHSPLPGLVNVSNAALAIVLAHAAGVPLATAIEAVGGAHAIPGRMER--VVERGD 366

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            + L    Y   P ++  A+  +  I+P   GR + V G   +     +    ++A  L+
Sbjct: 367 GWPLCLVDYAHTPDALVLALEAVRPITP---GRLVIVFGSDGDRDRGKRPIMGEIAARLA 423

Query: 398 --------------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                           ++    L+G      +D  P    VH + +              
Sbjct: 424 DVLVVTDENPRSEDPASVRAAILAGV-----RDVRPDLADVHEATSRAQAIRDALRLAGP 478

Query: 444 GDVVVV--KS 451
            D V+V  K 
Sbjct: 479 DDTVIVTGKG 488


>gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 516

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 153/473 (32%), Gaps = 46/473 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A+ G   G  P G V G  ID+R +   E F A+ G H  G  F   A+ +GA  V+
Sbjct: 25  IADAVGGTRHG--PAGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVL 82

Query: 70  VNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +   +  + +  +PV  V DV                +   +  +TG+ GKTTT  +L 
Sbjct: 83  TDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTTTTYLLR 142

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSH 171
             L  + K  A +G+    IG     + +                   ++  + E+    
Sbjct: 143 HLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHA 202

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           LG  R     +R  +A    +   HL     +E+    KA +F        + +  DD +
Sbjct: 203 LGLGR--VDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTERRSDRQVII-VDDDW 259

Query: 232 FELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIG 289
              L  +   +G     +   +   AD+Q       S  S ++++   GK+  V     G
Sbjct: 260 GRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPG 319

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESY 346
              A N  + + ++ +    V   +    +         R               +   +
Sbjct: 320 RFNAVNTALAI-VMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPRVIVDF 378

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP ++K+ +  L    P   GR   V G     G+        L  +         +L
Sbjct: 379 AHNPGALKSLLETLR---PSTAGRLRLVFGG---TGQRDLEKRPILGRIAGEL-ADFTYL 431

Query: 407 SGFH--------VLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVV 449
           +           + A   A        Y E                  D VV+
Sbjct: 432 TDDDPHEEDPGKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQDAKPQDTVVI 484


>gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
 gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
          Length = 337

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 117/343 (34%), Gaps = 52/343 (15%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I   S+       +  I   S  +     F  I G   +GH+++  AV+ GA 
Sbjct: 4   LRSLLKQILYESVRGDDDRKITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQAVEHGAA 63

Query: 67  LVVVNTDMVAS-------------------IGSLSIPVFGVDDVLGALNKLAVAA--RLR 105
           ++VV+   V                     I   +I V  V D   AL+ L+ A      
Sbjct: 64  VLVVDDRYVIESRSGPVILTEHMKVNVYELIRDRNICVVAVRDTRKALSALSAAFFDHPA 123

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVP 150
            +  +I ITG+ GKTTT  +    L         IG+  ++                 + 
Sbjct: 124 ERMKMIGITGTNGKTTTAFLTAGILQEAGYRVGMIGTIESYDGRRRETVKNTTPESCEIH 183

Query: 151 LTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIA 207
             L+RM   + D  + E+    +   R  T  +   I V   I P H+     +   E  
Sbjct: 184 RLLSRMVENECDCCVMEVSSQGIALQR--TADIFFDIGVFLNIEPDHIGKGEHATFSEYL 241

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----W 263
             K+ +   + + G   +N DD   + + A         + +F     +D          
Sbjct: 242 YCKSRL---MRQCGIGIVNQDDPNVDKILAGHTC----EVENFSIRHPSDVMAEDEWYGM 294

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  S QS   V+ + +  ++V    G     N L  + +    
Sbjct: 295 ESGSLQSHFTVKREWRREDIVMQLPGQFNIYNALAAISVAGHF 337


>gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K-12 substr. W3110]
 gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli]
 gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K12 substr. W3110]
 gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1]
 gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli DH1]
          Length = 495

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 166/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +  A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|290476452|ref|YP_003469357.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
 gi|289175790|emb|CBJ82593.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
          Length = 491

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 156/433 (36%), Gaps = 61/433 (14%)

Query: 63  KGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T        + +     IPV    ++L  L +             IAI G+
Sbjct: 77  RGASVVVASTAISADNPEIIAAREARIPVIRRAEMLAELMRYR---------HGIAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  M+    +      T+   G     +    T AR+     + I E   S    
Sbjct: 128 HGKTTTTAMIAGIYAQAGLDPTFVNGG----LVKAAGTHARLGTS-RYLIAEADESDASF 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P +AVIT I   H+       E +          L   G   +  DD   +
Sbjct: 183 LH-----LQPMVAVITNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVVK 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292
            L  +      + I ++G S+ AD ++  ++Q + Q +  +       + VV +  G H 
Sbjct: 238 ELIPRI----GRYITTYGFSEEADIRITHYEQKAAQGFFTISRDDLPELHVVLNAPGRHN 293

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDE 344
           A N    + + +    +    + +L+ F    G G+R+        +    +    ++ +
Sbjct: 294 ALNATAAVAVATEEGINDAAILASLAEFQ---GTGRRFDFLGEFSLKHINGKEGRVMLVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------ 398
            Y  +P  + A I            +RI +L         ++  + D A +LS       
Sbjct: 351 DYGHHPTEVDATIKAARA---GWPDKRIVMLFQ-PHRYTRTRDLYDDFANILSQVDVLLM 406

Query: 399 ---YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              Y+     + G    +L   +     +   +    + +   +   + + D+V+V+ + 
Sbjct: 407 LDVYSAGETPIPGADSRSLCRTIRSRGKLDPIFVSDSEQISAMLSQVIENNDLVLVQGAG 466

Query: 454 SCGFYRLINLLLE 466
           + G  ++   L E
Sbjct: 467 NIG--KIARNLAE 477


>gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
 gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
          Length = 486

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 143/419 (34%), Gaps = 45/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M
Sbjct: 86  SAIAADNPEIIAAHEARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VTSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  K      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELLPKV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD +L  ++Q   Q    +  QGK +  V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSDDADVRLADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D D  ++AL+ F     R         +    +    ++ + Y  +P  + A I 
Sbjct: 305 TEQGIDDDAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGF 409
                 P  + R + +          ++  + D A VLS          Y+     + G 
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGEAPIPGA 420

Query: 410 HVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +L   +     +       ++ L   +  +L   D+V+V+ + + G  +L   L E
Sbjct: 421 DSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGNIG--KLARRLAE 477


>gi|317154475|ref|YP_004122523.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944726|gb|ADU63777.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 480

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 147/414 (35%), Gaps = 46/414 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +     IP+    ++L  L +L          T +AI G+ GKTTT  +L
Sbjct: 91  AIPDKNPELVAARGRGIPIIPRAEMLAELMRLR---------TGVAIAGTHGKTTTTSLL 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +        I      IG  L        +  G + +  +   +  FL  L+ P I
Sbjct: 142 ATIFTEAGLDPTVI------IGGKLNTYGANARLGGGDYLIAEADESDGSFL--LLSPII 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +V+T +   H+  ++  + I  A       +   G   +  DD   + L         + 
Sbjct: 194 SVVTNVDKDHMDFYADQDAIDDAFTRFMNSIPFYGMNVVCGDDEGVQRLLPTIK----RP 249

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             ++G       +         +S   V L G+   EV     G H  QN L  +G+   
Sbjct: 250 CLTYGLGPKNRLRGEIITSHL-RSLFRVFLDGQPWGEVTVAQPGIHNVQNALACIGVALE 308

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS---- 361
              D +  +  L+ F    G G+R+     +    ++D+ Y  +PA + A +        
Sbjct: 309 AGLDKEDIVNGLANFG---GVGRRFERKGERKGVLVVDD-YGHHPAEIIANLRTARACYP 364

Query: 362 ------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+ G+ C+    +     DL  +  +Y  S   + G   L+L 
Sbjct: 365 DRRLVVAFQPHRFTRTQALFGEFCKAFTDA-----DLLLLTEIYPASESPIPGVSGLSLA 419

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + +     V +    + L   +  +L  GD+ + + + S   +R+    L +
Sbjct: 420 QGIKQVSDTKVQFFPDFESLEARLADTLRPGDLFMTQGAGSI--WRIGENWLNQ 471


>gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591]
 gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591]
          Length = 486

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 142/419 (33%), Gaps = 45/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAIAADNPEIIAAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VTSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  K      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELLPKV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  ++Q   Q    +  QGK +  V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSDDADVRVADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D +  ++AL+ F     R         +    +    ++ + Y  +P  + A I 
Sbjct: 305 TEQGIDDEAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGF 409
                 P  + R + +          ++  + D A VLS          Y      + G 
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAGEAPIPGA 420

Query: 410 HVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +L   +     +       ++ L   +  +L   D+V+V+ + + G  +L   L E
Sbjct: 421 DSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGNIG--KLARRLAE 477


>gi|311104002|ref|YP_003976855.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
 gi|310758691|gb|ADP14140.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
          Length = 468

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 161/422 (38%), Gaps = 58/422 (13%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  +V +T        V +  +  IPV     +L  L +L            IA+ G+ 
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRALMLAELMRLKRG---------IAVAGTH 114

Query: 118 GKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++   L++  +  T+   G  N+        AR+    D+ + E   S    +
Sbjct: 115 GKTTTTSLVASVLAAGDLDPTFVIGGRLNS----AGANARLGQG-DYIVVEADESDASFL 169

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             L     P +A++T I   H+  +   +  + SA  E  + L   G+  L  DD+    
Sbjct: 170 NLL-----PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCSDDANVRE 224

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----MEVVHHGIG 289
           +         + I ++G ++ A  +  + +    +    VQ   +      ++V  +  G
Sbjct: 225 IM----PFVSRPITTYGLNEEAQVRAYEVQPAGTRMRFNVQRTHRDTLLPPLQVELNLPG 280

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDE 344
            H  +N L  + + + L    +   +ALS FH    R               G FT+ID+
Sbjct: 281 LHNVRNALAAIAVATELGVADEAICEALSSFHGVGRRFTQTGDFPVPANHGGGTFTVIDD 340

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
            Y  +P  M A +   +        RRI VL         ++    D   VL   +    
Sbjct: 341 -YGHHPVEMAATL---AAARGAWPDRRI-VLAFQPHRYTRTRDCFEDFVRVLGTADAVLL 395

Query: 402 SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   L   D  AL R++ V       + E +  L   +   + DGDVV+V  + 
Sbjct: 396 TEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVMGAG 455

Query: 454 SC 455
           S 
Sbjct: 456 SI 457


>gi|332527086|ref|ZP_08403166.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111517|gb|EGJ11499.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 155/432 (35%), Gaps = 57/432 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VV++T +      +       IPV     +L  L +L        
Sbjct: 56  GHD---AANIEGADAVVISTAVKGDNPEVITARARRIPVVPRAVMLAELMRLRRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L+   +        +    +   L     +   G  E
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAEAGR--------DPTFVIGGKLLSAGANSRLGSGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
             +    E       + P +AV+T I   H+  +   +  + SA  +    +   G   +
Sbjct: 156 YIVVEADESDASFLNLMPIMAVVTNIDADHMETYGHDLSRLRSAFVDFIHRMPFYGAAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGK----S 280
             DD     +         + + S+G  ++   +    +           Q +       
Sbjct: 216 CGDDPGVRAIMPMLS----RPVVSYGLGEDVQVRAVDVEALPGGRMRFTAQRRNGVALPD 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALN 335
           + +  +  G H   N L  + +   L    +  ++AL+ F     R +R+       A  
Sbjct: 272 LSITLNLPGVHNVCNALAAIAVAMELELPDEPTVRALAGFTGVGRRFQRWGELPVSAARG 331

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTLID+ Y  +PA M A ++      P   GRR  VL         ++    D  +V
Sbjct: 332 GGSFTLIDD-YGHHPAEMAAVVAAARGAFP---GRR-LVLAFQPHRYTRTRDCFEDFVKV 386

Query: 396 LSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           +   +    + V+ +G   +   D  AL R++ V       + + +  L   I     DG
Sbjct: 387 MGSADAVLLTEVYAAGEAPIVAADGRALARALRVAGKVDPVFVDAIAELPQAIAEFAQDG 446

Query: 445 DVVVVKSSNSCG 456
           DVV+   + S G
Sbjct: 447 DVVIAMGAGSMG 458


>gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 489

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 147/421 (34%), Gaps = 43/421 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +IPV    D+LG L +             + I G+ GKT+T  M
Sbjct: 90  AAIPQDNPELVRAREENIPVIRRSDLLGELLEGHRQ---------VLIAGTHGKTSTTSM 140

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +AL +           +    +   L +   +   G  E  ++   E         P 
Sbjct: 141 AVVALQAAG--------MDPSFAIGGQLNKAGTNAHQGTGEAFVAEADESDASLLRYTPE 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P HL  F   E       +  + L   GT+ +  DD     L  ++ A GI 
Sbjct: 193 IAVVTNIEPDHLDFFKTPEAYFQVFEDFADRLTPGGTLVVCLDDPGAAALGERAVARGIN 252

Query: 246 TIYSFGK------SKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +G             +      +  +E ++  + + G+ +E++    G HM  N  
Sbjct: 253 AV-GYGTVDAVAAHPTVPVKATILSSRVVAEGTYAVLDIDGREVEIILQIPGNHMVLNGA 311

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAA 356
             L    +L AD+D     LS F     R + +       F    + + Y  +P  ++A 
Sbjct: 312 AALLSGYLLGADLDKLAAGLSDFSGVRRRFEYHGTVRGGQFDGASVYDDYAHHPTEVEAV 371

Query: 357 ISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---------WL 406
           +    + +   GEGR I        +   +  F  + A  LSL + + +          +
Sbjct: 372 LKAARERVDAAGEGRVIVAF--QPHLYSRTLEFAREFAGALSLADAAVLLEIFGAREKPV 429

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            G     + D +  +I V Y      +   I       D+V+   + S       +++ L
Sbjct: 430 EGVTSRVITDEM--TIPVSYEPNFSAVPDRIAEIAGPADIVLTMGAGSVTMLAPEILDRL 487

Query: 465 L 465
            
Sbjct: 488 R 488


>gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51]
 gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
 gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
          Length = 435

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/414 (22%), Positives = 166/414 (40%), Gaps = 49/414 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                N + +A    L+IPV+     LG         RL SK   IA+ G+ GKTTT  M
Sbjct: 56  AAYGENHEEIARARELNIPVYSYPQFLG---------RLMSKKRGIAVAGTHGKTTTTAM 106

Query: 126 LT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L S       +GS    IG      +       G F L  S   E R       P
Sbjct: 107 IGLALLQSGIDPTIVVGSDVPSIGGNAYSGQ-------GDFFLAES--CEYRRHFLNYSP 157

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              +IT I   H   F  ++++  A +EI + +   G IF+ ++D   + ++A+S     
Sbjct: 158 EYLIITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS----- 212

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
             I +FG ++ AD      +   E S M +   G  + E   H  G H   N L ++ + 
Sbjct: 213 -PIITFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALC 271

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +  +++LS F+  + R +       Q    LI + Y  +P  +++ +      
Sbjct: 272 LEIGVPTEKVLESLSHFNGTKRRFEHI----GQNAGALIVDDYAHHPTEIRSTLE---GA 324

Query: 364 SPHGEGRRI-AVL----GDMCE--MGELSQSFHID----LAEVLSLYNISHVWLSGFHVL 412
                 RRI AV         E  + E SQSF       +AE+ +    +++        
Sbjct: 325 RLSFPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNLNTI--SAS 382

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +L D +  + ++  Y  +++ +  ++  +L  GD+V+   +     Y++   L+
Sbjct: 383 SLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLTLGAGDI--YKVGQSLV 434


>gi|293392858|ref|ZP_06637176.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
 gi|291424717|gb|EFE97928.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
          Length = 491

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 143/426 (33%), Gaps = 51/426 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + +    +       IPV    ++L  L +             IA+ G+ G
Sbjct: 79  ASVVVVSTAIPSDNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +            N  +              + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+       E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
           +      + + ++G S +AD ++  + Q   Q    +  Q K +  V  +  G H A N 
Sbjct: 242 RV----GRHVTTYGFSDDADVRIESYSQRGPQGHFTLSRQDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPA 351
              + + +    D D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIDDDDILRALAGFQGTGRRFDFLGEYPLTPVNGKAGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
            + A I       P  + R + +          ++  + D A VLS          Y   
Sbjct: 358 EVDATIKAARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAG 413

Query: 403 HVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              + G    +L   +     +        D +   +   L + D+V+V+ + + G  ++
Sbjct: 414 EAPIPGADSRSLCRTIRNRGKLDPILVSDADTVPETLAQLLQNDDLVLVQGAGNVG--KI 471

Query: 461 INLLLE 466
              L E
Sbjct: 472 ARKLAE 477


>gi|172059550|ref|YP_001807202.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           MC40-6]
 gi|229486473|sp|B1YSS5|MURC_BURA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171992067|gb|ACB62986.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 158/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A +   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +A    DAL R++         +  ++D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDDVPDALAGVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 401

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 153/417 (36%), Gaps = 49/417 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V     + IP+     +L  L +L            IAI G+ GKTTT  ++   L+ 
Sbjct: 2   PEVIRAREMKIPIVPRALMLAELMRLKQG---------IAIAGTHGKTTTTSLVASVLAE 52

Query: 133 IK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T+   G  N+        AR+    +  + E   S    +  L     P +AV+T
Sbjct: 53  AGLDPTFVIGGRLNS----AGANARLGSG-EHIVVEADESDASFLNLL-----PVMAVVT 102

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +     ++  A  +    +   G   L  DD     +  +        I S
Sbjct: 103 NIDADHMETYGHDFGKLKKAFVDFLHRMPFYGAAILCTDDPAVRDICEQVTC----PITS 158

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +G +++A+ +    +    Q    VQ +       MEVV +  G H   N L  + +   
Sbjct: 159 YGFNEDAEVRAVNVRAVGGQMHFTVQRRNGVVLPDMEVVLNLPGLHNVLNALSAIAVAVE 218

Query: 306 LTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L       +KAL+ F     R +RY   AL QG    + + Y  +P  M A +   +   
Sbjct: 219 LNIPDAAVVKALAEFKGVGRRFQRYGDLALPQGGTVTVIDDYGHHPVEMAATL---AAAR 275

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN----ISHVWLSGFHVLALKDA--L 418
               GRR  VL         ++    D  +V+        ++ V+ +G   +   D   L
Sbjct: 276 GAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVIGAGADAVLLAEVYAAGEAPIVAADGRSL 334

Query: 419 PRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
            R++ +       + + +  +      +  DGDV++   + S G    +++ LL  +
Sbjct: 335 ARALRIGGKVEPLFVDDIAAMPQAAIDNARDGDVLMCMGAGSIGAVPGKIVELLQNQ 391


>gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 483

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 97/419 (23%), Positives = 157/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  QG FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  M A ++      P     R  VL         ++    D  +VL   +   ++ V+
Sbjct: 342 HPVEMAATVAAARGAFPD----RRLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLLLAEVY 397

Query: 406 LSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D   L R++ V       + E ++ +   I  +  D DVV+   + S G
Sbjct: 398 SAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVVITMGAGSIG 456


>gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
 gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
          Length = 476

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 152/448 (33%), Gaps = 54/448 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV+      +   V +     IPV     +L  L
Sbjct: 59  LAYAGAKV----FIGHKAENITGASVVVISSAIRDDNPEVVAAKEARIPVIQRAQMLAEL 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IA+ G+ GKTTT  M+++  +            N  +        
Sbjct: 115 MRFR---------HGIAVAGTHGKTTTTAMVSMIYAEAGLD---PTFVNGGLVKSAGTNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIF 214
                 + I E   S    +      ++P I+++T I P H+       +E+        
Sbjct: 163 HLGRSRYLIAEADESDASFLH-----LQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   L  DD+    L  +      + + ++G S+NAD+++  ++Q   Q    V
Sbjct: 218 HNLPFYGLAVLCADDADLMSLVPQV----GRQVITYGFSENADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ ++V+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 ICPSGERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADFQGAGRRFDQLGQF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +   I    Q            PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSL 441
              +       +L +Y      + G    AL  ++     V          L   +   +
Sbjct: 394 QVDAL-----IMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPVLVSDTAQLGEVLDHLI 448

Query: 442 VDGDVVVVKSSNSC-GFYR-LINLLLEE 467
            DGD+++ + + S     R L+    +E
Sbjct: 449 QDGDLILAQGAGSVSKLSRQLVERWTKE 476


>gi|291326816|ref|ZP_06125975.2| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
 gi|291312715|gb|EFE53168.1| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
          Length = 472

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 144/418 (34%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +   L IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 72  AISSENPEIQAAKELRIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 123 SGIYAQAGLD---PTFVNGGLVKSAGTHARLGSSRYLIAEADESDASFLH-----LQPLV 174

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       + + +        L   G   +  DD     L  K      +
Sbjct: 175 AVVTNIEADHMDTYQGDFDNLTNTFINFLHNLPFYGRAVMCIDDPVIRSLLPKI----GR 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD ++ +++Q   Q +  +  +    + VV +  G H A N    + + +
Sbjct: 231 YITTYGFSEDADVRITQYEQKGNQGFFTIARENMPELTVVLNAPGRHNALNATAAVAVAT 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               D    + AL  F     R         R    +    ++ + Y  +P  + A I  
Sbjct: 291 EEGIDDLHILSALVEFQGTGRRFDFLGNFPLRNVNGKEGEVMLVDDYGHHPTEVDATIKA 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFH 410
                P  + R + V          ++  + D   V         L +Y+     + G  
Sbjct: 351 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFVNVLGQVDVLLMLDVYSAGEKHVPGAD 406

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L  ++     +   Y   ++ +   +  +L + D+++V+ + + G  ++   L E
Sbjct: 407 SRSLCRSIRGRGQIDPIYVADIEQIPHILAQTLDENDLILVQGAGNIG--KIAKSLAE 462


>gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium kansasii ATCC 12478]
          Length = 528

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 164/462 (35%), Gaps = 49/462 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              + G+++ ++ + P + F A+ G    G      A+++GA  V+ + D VA++G+   
Sbjct: 42  DVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIERGAVAVLTDADGVAAMGAHAA 101

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+PV         L  LA     R   + T++ ITG+ GKTTT  ++   L +  +    
Sbjct: 102 SVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGTSGKTTTTYLVEAGLRAGGRVAGL 161

Query: 140 IGSYNNHIGV---------------PLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+    I                    LA M    VD  + E+    L   R      R
Sbjct: 162 IGTIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVDTVVMEVSSHALALGR--VDGTR 219

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHA 241
             +   T ++  HL     +E+   AKA +F+       GT+ +  DD     +  ++  
Sbjct: 220 FAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAGTVVVCVDDDAGRAMAERAGD 279

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMT 299
                I    + + A ++        +       +   G    V     G +   N L+ 
Sbjct: 280 A----ITVSARDRAAHWRAVDVVPMGAAGQEFTAIDPAGVQHRVRIGLPGGYNVANCLLA 335

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L I+  +    + A             G+  +    Q F  L+D  Y   P +++A ++ 
Sbjct: 336 LAILDSIGVSPEQAAPG---LRQARVPGRLEQVDRGQDFLALVD--YAHKPGALRAVLTT 390

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISHVWLSGFHVLALKDAL 418
           L+      + R   V G   E     ++    + AE+  L  ++     G    A++  +
Sbjct: 391 LTS----PDRRLAVVFGAGGERDPGKRAPMGAVAAELADLVVVTDDNPRGEDPAAIRREI 446

Query: 419 -------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +  V              +    GDVV+V  K 
Sbjct: 447 LAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVAGKG 488


>gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
 gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 489

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 172/469 (36%), Gaps = 51/469 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           + I I+ +  +  I+I ++S  P + FFA+ G    G+DFI  A+  GA L++ +   + 
Sbjct: 5   NIIEIIKKLNIRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQAPIT 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S  +    V  V ++   +  +      +    ++A+TG+ GKT+             + 
Sbjct: 65  SYSN----VIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQ 120

Query: 137 YACIGSYN-------------------------NHIGVPLTLARMPVDVDFGIFELGMSH 171
            A IG+                           ++I     L ++  +    +     SH
Sbjct: 121 AASIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFVALEASSH 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDS 230
             +   L  + +   A  T+ +  HL     + +   AK ++F E +   G   +N + +
Sbjct: 181 GLDQNRLMDI-KFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNIN 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++++K        + S    +  D Q+   +       +  + +    +     IG 
Sbjct: 240 ELSIIQSKITDEFGLKLLSV--EQQGDIQIIDVQSSLNGQKVHFRYKNSDYKFEVPVIGR 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+ L +   +  D    I  LS   P +GR ++ +      F       Y   P
Sbjct: 298 VHITNILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKIQFGNCYAFV-----DYALTP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++   ++ L  +  + +GR I + G       +++   + +  V S  +   V ++   
Sbjct: 353 NALATMLTELRAL--NNKGRLITIFGGSENRDAIARR--VQMGIVASKLS-DLVIVTDQD 407

Query: 409 ---FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ K+ L  +              +  S +VD D++++  K 
Sbjct: 408 SGNEDPAAIRKEILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKG 456


>gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
 gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
          Length = 488

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 153/425 (36%), Gaps = 40/425 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----VLGA-------LNKLAVAARLR 105
           +     +GA + V   ++        +    + D    +  A       L++      L 
Sbjct: 66  LKALASEGARVWVGFDELHQEAAQTIVMSSSIRDDNVELRAARARGAKVLHRSQGLGSLM 125

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  +LT+AL             +    V   LAR   +   G  
Sbjct: 126 HGQRPVAVAGANGKTTTTSLLTVALQGCG--------LDPSFAVGGELARHGTNAHRGAD 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           ++ +    E      + RP +A++T + P HL  +     + +A   +   ++  G +  
Sbjct: 178 DIFVVEADESDGSFIVYRPEVAIVTNVQPDHLDFYGSFAVVQAAYEALVATIQPGGLLVT 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD+    L  ++ A G + + ++G   +AD  L  ++Q    S   V  +G    +  
Sbjct: 238 CADDAGSRALAERATARGTR-VLTYGFRPDADVALGDYRQDGLTSGATVLDEGVRRLLTL 296

Query: 286 HGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              G H A N +      V  L    D  +  L+ F    G  +R+          ++D+
Sbjct: 297 GIPGRHNALNAVAAYTAAVHGLGQQPDRVLAGLASFT---GTRRRFEPKGEAAGVVVVDD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------V 395
            Y  N   + A +   SQ+     GR I V      +   ++ F ++L           V
Sbjct: 354 -YAHNAGKVAAVVETASQL-VVRPGRLIVVF--QPHLYSRTRDFAVELGRGLAPADVVIV 409

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           + +Y      + G     + DA+ R+     VHY  +   +   +      GD+V+   +
Sbjct: 410 MDVYAAREDPVPGVSGELVADAVRRTGRGSDVHYVPSWSEVPSVVAQVARAGDLVLTVGA 469

Query: 453 NSCGF 457
                
Sbjct: 470 GDVTM 474


>gi|229521231|ref|ZP_04410651.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229341763|gb|EEO06765.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 506

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 138/407 (33%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 273 YGFSDDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
 gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
          Length = 495

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/468 (18%), Positives = 160/468 (34%), Gaps = 47/468 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G   V+   +  A 
Sbjct: 13  WVPGAPERALREMTLDSRVAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAE 72

Query: 78  IGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
            G +     +PV  +  +   L+ LA     +   K  +I +TG+ GKTTT ++L     
Sbjct: 73  DGQIVETHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLLAQWAQ 132

Query: 132 SIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRF 177
            + +T A +G+  N +   L               L    VD    +  + +S  G ++ 
Sbjct: 133 LLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAAMEISSHGLVQH 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +    A  T ++  HL     +    +AK  +F    + G   +N DD        
Sbjct: 193 RVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE-HQVGQAIINADDKVGRRWLE 251

Query: 238 KSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           K       T+ +            +  K       + +         ++    +G     
Sbjct: 252 KLPDAVAVTMENH-LQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDIDSRLMGAFNVS 310

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +       S   P  G   R       G  T++ + Y   P +++
Sbjct: 311 NLLVALATLLSLDYPLAALTATASQLQPVTG---RMEVFSAPGKPTVVVD-YAHTPDALE 366

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
            A++       H +GR   + G   +  +  +     +AE  +      V ++  +  + 
Sbjct: 367 KALTA---ARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQCA----DVVVITDDNPRSE 419

Query: 414 --------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   L  +                      GD+V+V  K 
Sbjct: 420 DPAAIVSDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
 gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
          Length = 495

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 171/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASCDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A  G +     +PV  +  +   L+ L      +   +  ++ +TG+ GK
Sbjct: 61  AAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + ++      + E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATAVNYHDSGATIQFDSSWGNGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  GR + +    +      +
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF----SAPGKPAV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALQA---ARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +   +++ M+G    + +++    + DVV+V  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans
           ATCC 17616]
 gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 513

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 165/473 (34%), Gaps = 43/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   + +A+  +  +   V  +D + G +               I +TG+ GKT+  + 
Sbjct: 69  VLYQPEGLAATPNAPVALAVPALDQLAGEIASGW-YGDPSDGLLAIGVTGTNGKTSCTQW 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++ +  A IG+  + +   L               +LA++       +  E+  
Sbjct: 128 IAAALTALHQPCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     IAV T +   HL      E   +AKA++F          +N DD
Sbjct: 188 HALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRAAVVNRDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +    L  K         Y  G ++ A     +      +  +  +   ++      +V 
Sbjct: 245 AAGRRLLEKLAGRVRTIAYGIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDADVE 304

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  LG +       D A+  ++   P  GR +R      Q    L+  
Sbjct: 305 VGTLGTFNVSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRL-GGRLQNDEPLVVI 363

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  L  I+    GR I + G   +     +     +AE L+      V
Sbjct: 364 DYAHTPDALEKTLDALRPIAVARGGRLICMFGCGGDRDATKRPLMGAIAERLAD---DVV 420

Query: 405 WLSG----FHVLALKDALPRSI----HVHYSETMD-GLFLFIQSSLVDGDVVV 448
             S         A+ D +   +         E     +   ++ +  +  VV+
Sbjct: 421 VTSDNPRSEDPQAIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVL 473


>gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas
           sp. 3As]
          Length = 469

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 162/472 (34%), Gaps = 64/472 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA- 65
            H+L  AI G  +               R +       AI      GHD         A 
Sbjct: 25  LHNLGYAISGSDLSESATV---------RRLRELGLRVAI------GHD-AAQVQDADAL 68

Query: 66  ---GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                V  +   V +  +  IPV     +L  L +L            IAI G+ GKTTT
Sbjct: 69  VVSTAVRADNPEVLAARARHIPVVPRAVMLAELMRLKRG---------IAIAGTHGKTTT 119

Query: 123 KEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             ++   L+         IG   N  GV   L +     ++ + E   S    +  L   
Sbjct: 120 TSLVASVLAEGGLDPTFVIGGRLNSAGVNAKLGQG----EYIVVEADESDASFLNLL--- 172

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             P +AV+T I   H+  +      +  A  +    L   G   L  DD+    +     
Sbjct: 173 --PVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCVDDAAVRGIM---- 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNM 296
               K I S+G +++A  +    +    Q    V  +       + V  +  G H  QN 
Sbjct: 227 PFVSKPITSYGFAEDAQVRAIDVRAEGAQMHFTVLRRNGVQLPPLAVTLNLPGRHNVQNA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKA 355
           L  + + + L  D     +AL+ F     R +RY   A + G    + + Y  +P  M A
Sbjct: 287 LAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYGEVAAHHGGHFTLIDDYGHHPVEMAA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL 412
            +   +       GRR  VL         ++    D  +VL   +    + V+ +G   L
Sbjct: 347 TL---AAARGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKVLGEADAVLLAEVYSAGEAPL 402

Query: 413 ALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              D   L R++ V       + E +  L   I     +GDV++   + S G
Sbjct: 403 VAADGRSLARAVRVAGKTEPVFVEAVADLPQAILEMAREGDVLICMGAGSIG 454


>gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 495

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 167/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++V     A+ G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIVEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|239813927|ref|YP_002942837.1| UDP-N-acetylmuramate--L-alanine ligase [Variovorax paradoxus S110]
 gi|259509785|sp|C5CNF5|MURC_VARPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239800504|gb|ACS17571.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus S110]
          Length = 485

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 149/436 (34%), Gaps = 55/436 (12%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F      H DG D ++      +  V  +   V +     IPV     +L  L +L    
Sbjct: 54  FVGHAAAHIDGADAVVT-----STAVQSDNPEVLAAREKRIPVVPRALMLAELMRLKQG- 107

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDV 160
                   IAI G+ GKTTT  ++   L +     T+   G  N                
Sbjct: 108 --------IAIAGTHGKTTTTSLVASVLDAAGLDPTFVIGGRLN-----SAGANAQLGSG 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E   S    +  L     P +AV+T I   H+  +     ++  A  +    +  
Sbjct: 155 DYIVVEADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFAKLKKAFVDFLHRMPF 209

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   L  DD     + A+        + S+G  + A  +    +    Q     Q +  
Sbjct: 210 YGVAILCTDDPAVRDIVAEVTC----PVTSYGFGEEAQVRAIDVRAVGGQMHFTAQRRNG 265

Query: 280 ----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK----EGRGKRYR 331
                + +V +  G H  +N L  + +   L    +   + L+ F       +  G+   
Sbjct: 266 VTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGEVAA 325

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G FT+ID+ Y  +P  M A I   +       GRR  VL         ++    D
Sbjct: 326 QGEPAGSFTVIDD-YGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFED 380

Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSS 440
             +V+   +      V+ +G   +   D   L R++ V       + + +  +   I  +
Sbjct: 381 FVKVIGNADAVLLGEVYAAGEPPIVAADGRTLARALRVAGKVEPVFVDDIGAMPQAILDN 440

Query: 441 LVDGDVVVVKSSNSCG 456
              GDVV+   + S G
Sbjct: 441 ARAGDVVLCMGAGSIG 456


>gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
 gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
          Length = 487

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 158/452 (34%), Gaps = 38/452 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G++ DSR + P   F A+ G   DG  F   A + GA  V         +   +  
Sbjct: 20  RPVAGLTADSRRVVPGGVFVAVPGTAADGRLFAAAAARAGAVAVAGEGTRPTDLPEATA- 78

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V +   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+  
Sbjct: 79  WIEVAEARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGTVG 138

Query: 145 ---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          + + +  TLAR+  +    +     SH  E R L   V    A  
Sbjct: 139 IVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLAMEASSHGIEQRRL-DGVALTAAAF 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   HL     +E+   AK  +F  L   G    +N D ++ E +   + A G  T+ 
Sbjct: 198 TNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAG-HTVL 256

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+S +   +L +         + +   G+   V    +G    +N L+  G+     A
Sbjct: 257 TTGRSGDF-IRLIESGTVGFSQSLTLAHDGREYRVRLPLVGGFQVENALVAAGLALSTQA 315

Query: 309 DVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    +      G  G+  R     G   L+D  Y   P +++  ++ L    P  
Sbjct: 316 GAADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALEHVLTALR---PFA 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
            G+ + V G         +     +AE L+      V ++  +             L  +
Sbjct: 371 SGQLVVVFGCGGNRDAGKRPIMGAIAERLA----DRVIVTDDNPRNEEPAAIRAAILAAA 426

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 427 PGAEEIGDRAEAIRAGVRGLRAGDVLVVAGKG 458


>gi|149190169|ref|ZP_01868445.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
 gi|148836058|gb|EDL53019.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
          Length = 486

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 146/421 (34%), Gaps = 46/421 (10%)

Query: 65  AGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +            L IPV    ++L  L +             IA+ G+ G
Sbjct: 82  ASVVVVSTAIDPENQELVAAKELRIPVVRRAEMLAELMRFR---------HGIAVAGTHG 132

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++T   S            N  +                I E   S    +   
Sbjct: 133 KTTTTALVTQIYSEAGMD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-- 187

Query: 179 THLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P ++++T I   H+  +    + +     +    L   G   +  DD     L  
Sbjct: 188 ---LQPMVSIVTNIEADHMDTYGGDFDTLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIP 244

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
                  + + ++G S +AD ++  ++Q  +Q    V  +G+  +E+  +  G H A N 
Sbjct: 245 SVS----RQVITYGFSDDADVRIENYRQDGQQGKFTVVRKGRENLEITLNIPGQHNALNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + + +      +  + A+        R +            ++ + Y  +P  +   
Sbjct: 301 AAAIAVATEDNIADEAIVNAMLGTEGTGRRFEHLGEFETGNGKVMLVDDYGHHPTEVDVT 360

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA 413
           I            R + +          ++  + D A VL   ++     V+ +G   +A
Sbjct: 361 IKAARNGWAEK--RLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLVMLDVYSAGEAPIA 416

Query: 414 LKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D   L R+I         +   ++ L   + + L +GD+++ + +   G  ++   L 
Sbjct: 417 GADGRSLCRTIRTRGKLDPVFVPDVNALPSVLSNLLQEGDLLLTQGAGDIG--KVARKLE 474

Query: 466 E 466
           +
Sbjct: 475 Q 475


>gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 449

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 94/414 (22%), Positives = 166/414 (40%), Gaps = 49/414 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                N + +A    L+IPV+     LG         RL SK   IA+ G+ GKTTT  M
Sbjct: 70  AAYGENHEEIARARELNIPVYSYPQFLG---------RLMSKKRGIAVAGTHGKTTTTAM 120

Query: 126 LT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L S       +GS    IG      +       G F L  S   E R       P
Sbjct: 121 IGLALLQSGIDPTIVVGSDVPSIGGNAYSGQ-------GDFFLAES--CEYRRHFLNYSP 171

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              +IT I   H   F  ++++  A +EI + +   G IF+ ++D   + ++A+S     
Sbjct: 172 EYLIITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS----- 226

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
             I +FG ++ AD      +   E S M +   G  + E   H  G H   N L ++ + 
Sbjct: 227 -PIITFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALC 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +  +++LS F+  + R +       Q    LI + Y  +P  +++ +      
Sbjct: 286 LEIGVPTEKVLESLSHFNGTKRRFEHI----GQNAGALIVDDYAHHPTEIRSTLE---GA 338

Query: 364 SPHGEGRRI-AVL----GDMCE--MGELSQSFHID----LAEVLSLYNISHVWLSGFHVL 412
                 RRI AV         E  + E SQSF       +AE+ +    +++        
Sbjct: 339 RLSFPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNLNTI--SAS 396

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +L D +  + ++  Y  +++ +  ++  +L  GD+V+   +     Y++   L+
Sbjct: 397 SLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLTLGAGDI--YKVGQSLV 448


>gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
 gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 167/459 (36%), Gaps = 55/459 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+ + + VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   L+ L      +      ++ +TG+ GKTTT ++L     ++  T A +G+  
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGDALRLVGVTGTNGKTTTTQLLAQWSQALGDTSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  VD       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +      +N DD       ++     +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLSQ-----LPQAVAV 235

Query: 251 GKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               N               +     + +       + ++    +G     N+L+ L  +
Sbjct: 236 SMEGNVPTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +   + A     P  GR + +    N      +   Y   P +++ A   L+  
Sbjct: 296 LSLGYPLAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAA 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
             H +G+   V G   +  +  +     +AE L+      V ++  +  +      + D 
Sbjct: 349 RLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQAIIADI 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           L   +   +++ + G    + S++    + DVV++  K 
Sbjct: 405 LSGLLDAGHAQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443


>gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp.
           X514]
 gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
 gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
          Length = 464

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 159/420 (37%), Gaps = 47/420 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP      +LG + K             IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRATLLGLIMKKYKYG--------IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L  +         ++  + V   +  +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVILDGMG--------FDPTVLVGGEVDVIGGNVKVGNSEYFVTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVVN 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQN 295
             +    K I ++G  +++D++ +      +  +  +V  + + M        G H   N
Sbjct: 231 GLN----KNIVTYGIYQDSDWKAKSISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEVKGIVDGITIVDD-YAHHPAEIKA 342

Query: 356 AISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +                PH   R  ++L D  E  + +    I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADK--IIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S   ++ L     R   V Y +  D +  ++  +   GD+V+   + +   Y +  + L+
Sbjct: 401 SSKDLVEL--ISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNI--YEVGEMFLK 456


>gi|329901113|ref|ZP_08272729.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549212|gb|EGF33800.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 471

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 98/429 (22%), Positives = 152/429 (35%), Gaps = 55/429 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GA  +V +T +      +       IP+     +L  L +L        
Sbjct: 56  GH---AAAYIDGADAIVTSTAVKEDNPEVVAGRERHIPIVPRALMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L+               IG  LT A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAQGGLDP------TFVIGGRLTSAGANAKLGAGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +     ++  A  +    L   G   L
Sbjct: 158 VAEADESDASFLN--LSPVIEVITNIDADHMETYEHDFNKLKQAFVDFTLRLPFYGIAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVV 284
             DD     +  +      K I ++G  + AD +    +         V   G   + + 
Sbjct: 216 CLDDVHVREIMPRIA----KPIMTYGFHEEADVRAIDARAVGGLMQFTVIQDGYPPLPIS 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQG 337
            +  G H  QN    + I   L+       KAL+ F+    R  RY       R     G
Sbjct: 272 LNQPGMHNVQNACAAIAIARELSVADCDTQKALAEFNGVGRRFTRYGEIAFAGRDGKPGG 331

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            F L+D+ Y  +P    A    LS       GRR  VL         ++    D  +VLS
Sbjct: 332 TFALVDD-YGHHPVETAA---TLSAARGAYPGRR-LVLAFQPHRYTRTRDLFEDFVKVLS 386

Query: 398 LYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446
             +    + V+ +G   +   D  AL  ++ V       + E +  +   I + L DGDV
Sbjct: 387 STDALVLAEVYAAGEQPIVAADGRALAHALRVAGKVEPVFVEVIADMPETIMNMLRDGDV 446

Query: 447 VVVKSSNSC 455
           V+   + S 
Sbjct: 447 VITMGAGSI 455


>gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
 gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
          Length = 495

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 171/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L      +   +  ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSGRLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWAQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLAGQGATLA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + ++      + E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATAVNYHDSGATIQFASSWGNGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +   +   P  G   R       G  T++
Sbjct: 299 IDSRLMGAFNVSNLLLALATLLALGYPLAGLLSTAARLQPVCG---RMEVFAAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +   +++ M+G    + +++    + DVV+V  K 
Sbjct: 408 VVVVTDDNPRTEEPRAIITDILAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKG 467


>gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
 gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
          Length = 513

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 165/473 (34%), Gaps = 43/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   + +A+  +  +   V  +D + G +               I +TG+ GKT+  + 
Sbjct: 69  VLYQPEGLAATPNAPVALAVPALDQLAGEIASGW-YGDPSDGLLAIGVTGTNGKTSCTQW 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++ +  A IG+  + +   L               +LA++       +  E+  
Sbjct: 128 IAAALTALHQPCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     IAV T +   HL      E   +AKA++F          +N DD
Sbjct: 188 HALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRAAVVNRDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +    L  K         Y  G ++ A     +      +  +  +   ++      +V 
Sbjct: 245 AAGRRLLEKLAGRVRTIAYGIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDADVE 304

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  LG +       D A+  ++   P  GR +R      Q    L+  
Sbjct: 305 VGTLGTFNVSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRL-GGRLQNDEPLVVI 363

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  L  I+    GR + + G   +     +     +AE L+      V
Sbjct: 364 DYAHTPDALEKTLDALRPIAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLAD---DVV 420

Query: 405 WLSG----FHVLALKDALPRSI----HVHYSETMD-GLFLFIQSSLVDGDVVV 448
             S         A+ D +   +         E     +   ++ +  +  VV+
Sbjct: 421 VTSDNPRSEDPQAIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVL 473


>gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter sp. 638]
 gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638]
          Length = 495

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 164/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  VP   +  + +DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQNVPARALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L          +  ++ +TG+ GK
Sbjct: 61  AAIIAEAKDDATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT +++      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLAGQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +       G   +
Sbjct: 181 AMEVSSHGLVQHRVSALKFAASVFTNLSRDHLDYHGDMENYEAAK-WLLYSTHHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKATDVDYHDSGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +   +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALDYPLSELVNTGARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   ++  ++G    + +++    + DVV++  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKG 467


>gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
 gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
          Length = 533

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 139/391 (35%), Gaps = 38/391 (9%)

Query: 9   DLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++            P G  + GI++ ++ + P + F A+ G    G  +   A+++GA  
Sbjct: 3   EVAALTGARLERPAPTGERLTGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAA 62

Query: 68  VVVNTDMVASIGSLS---IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           V+ +      +       + +  V+     L  +A         +  ++ +TG+ GKTTT
Sbjct: 63  VLTDRAGAELLAGTDLGSVALLVVERPREHLGAIARQLYGDPSRRLAVVGVTGTSGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELG 168
             +L  AL++     A IG+    I   +T              L  + V+   G   + 
Sbjct: 123 CYLLEAALAADGSRSAVIGTVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAME 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S            R  +   T ++  HL     +E+   AKA +F+G  + G   ++ D
Sbjct: 183 VSSHALSLGRVSGTRFAVGAFTNLSQDHLDFHHDMEDYFRAKAMLFDG--RAGAHVIDVD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVH 285
             +   L A+          +       AD+ +      +     + +   GK  + +  
Sbjct: 241 TEYGARLAAEHPEA-----LTVSDRPGAADWSVEMVTLAANGVQHVVLSGPGKRQVTLDL 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N  + L  V  L  DV  A  A          G+  R    Q F  ++D  
Sbjct: 296 AIPGAFNVGNAAVALACVDALGRDVQQAADA---LATVVVPGRMERVDAGQDFLAVVD-- 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y   P ++ A +  + Q      G  I VLG
Sbjct: 351 YAHKPGAVAAVLDAIGQ---GLAGPLIVVLG 378


>gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 478

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/420 (20%), Positives = 147/420 (35%), Gaps = 47/420 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV     +L  L +             IAI G+ GKTTT  ++
Sbjct: 73  AVHADNPEVLAAREKHIPVVPRALMLAELMRFKQG---------IAIAGTHGKTTTTSLV 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L+         IG   N  G    L       D+ + E   S    +  L     P 
Sbjct: 124 ASVLAEGGLDPTFVIGGRLNSAGANAKLG----SGDYIVVEADESDASFLNLL-----PV 174

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H+  +      +  A  +    +   GT  L  DD     +  +      
Sbjct: 175 MAVVTNIDADHMETYGHDFGNLKKAFVDFLRRMPFYGTAILCTDDPVVRQIVPEMSC--- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMTL 300
             I S+G ++ A  +    +    Q     Q +       ++VV +  G H   N L  +
Sbjct: 232 -PITSYGLNEEAQVRAINVRAVGAQMHFTAQRRNGVKLPDLDVVLNLAGQHNVLNALAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISV 359
            +   L        KALS F     R + Y       G    + E Y  +P  + A    
Sbjct: 291 AVAVELNVPDAAVQKALSDFTGVGRRFQSYGELPARDGGRFTVIEDYGHHPVEVAA---T 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN----ISHVWLSGFHVLALK 415
           LS       GRR  VL         ++    D  +V+S +     ++ V+ +G   +   
Sbjct: 348 LSAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVKVISSHADAVLLAEVYAAGETPIVAA 406

Query: 416 DA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLL 465
           D   L R++ V       + +++  +   I  +  DGD+V+   + S G    +++ +L 
Sbjct: 407 DGRSLARALRVAGKVEPVFVDSIHDMPQAIVDAAQDGDIVMCMGAGSIGLVPAKVVAMLQ 466


>gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 133/375 (35%), Gaps = 28/375 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS S+     F A+ G    G  F+    + GA
Sbjct: 4   SLEKLAQLSHGRVIG-DGTVEVSACGLDSASLPEGALFAALPGTRVHGAQFVGD-TKAGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            L            + + P+  VDD+   L  +A           T++ ITG+ GKTTT 
Sbjct: 62  VLTDAPGLDHLRQANETRPIIVVDDIRAVLGPIAAEIYGHPTRDLTVLGITGTSGKTTTS 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHI---GVPLTL------------ARMPVD-VDFGIFEL 167
            +L   L     +   IG+    I    VP +L            ARM  + V   + E+
Sbjct: 122 YLLEAGLLQAGHSVGLIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVMEV 181

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R         +A  + ++  HL     +EE  SAK+ +F G +      +  
Sbjct: 182 SSHALELGR--VRGTNFAVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLGEQAAQRAVICV 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHH 286
           DD + E L+      G        ++ +A    R+    +     +++ L G        
Sbjct: 240 DDEWGERLRGMVKDAGAPVTTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFRLP 299

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N  + LG+ + +  D    +            G+  R    Q F  ++D  Y
Sbjct: 300 LPGEFNIANAALALGMATAVGEDPQVFLTG---VENVAVPGRMERIDRGQDFVAVVD--Y 354

Query: 347 NANPASMKAAISVLS 361
              PA++ A +  L 
Sbjct: 355 AHKPAAIAAVLDTLR 369


>gi|153006723|ref|YP_001381048.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp.
           Fw109-5]
 gi|166222952|sp|A7HH68|MURC_ANADF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152030296|gb|ABS28064.1| UDP-N-acetylmuramate--alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 143/401 (35%), Gaps = 41/401 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V       IP+    ++L  L +L            +AI GS GKTTT  +
Sbjct: 75  SAVRKDNPEVVEARRRKIPIIPRAEMLAELMRLKYG---------VAIAGSHGKTTTTSL 125

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               L+       A +G   N  G    L R     D+ + E   S    +      + P
Sbjct: 126 AAHLLAHAGLDPTAVVGGKVNTFGSNAKLGRG----DYMVVEADESDGSFLH-----IPP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA++T I P HL ++   E +     +    +   G   L  D    + L  +  +   
Sbjct: 177 TIAIVTNIDPEHLDHWKTEEALRKGFLDFVNRVPFYGRAILCIDHPTVQSLLPEVES--- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
               ++G+S  AD++    +        +   + + +       +G H A N L  + I 
Sbjct: 234 -RYVTYGESHQADYRADGIEVSGHAVRFDAFRRDEPLGRFEVRLVGRHNALNALAVVAIA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    D   +AL+ F    G  +R+      G  T++D+ Y  +PA +KA +    + 
Sbjct: 293 DEMGVPADVTREALASFG---GVQRRFTVRGEAGGVTVVDD-YGHHPAEVKATLLGAREA 348

Query: 364 SPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
                 RR+  L            + E + +F+  D+  +  +Y      + G    AL 
Sbjct: 349 ----FHRRVVCLFQPHRYTRTRDLLPEFATAFNDADVLLLTDIYAAGEEPIPGATSEALA 404

Query: 416 DALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +A+    H   S      L    +  +  GD+V+   +   
Sbjct: 405 EAIRACGHRDVSLVPRPELARAARQRVRPGDIVLTLGAGDI 445


>gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 465

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 156/435 (35%), Gaps = 48/435 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
                 + DG + +++        V  +   +     L+IP      +LG + K      
Sbjct: 58  IPHNASNVDGANLVVYT-----AAVKEDNPEMIRARELNIPTIDRATLLGEIMKKYKYG- 111

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                  I + GS GKTTT  ++++ L  +        +Y+  + V   +  +  +V  G
Sbjct: 112 -------IGVAGSHGKTTTTSLISVLLEEM--------NYDPTVLVGGEVDVIGGNVRVG 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  ++   E         P+IAVI  +   HL  F  I+ I  +  +    + K G +
Sbjct: 157 KSDYFVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPKDGFV 216

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSME 282
               DDS    +         + I +FG   N  +  +  K   +     +V   G  ++
Sbjct: 217 VACGDDSNTMSVLKNV----DRNIITFGIDSNCTWNAKNIKFDEKGFPSFDVYYNGVFIQ 272

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L TL +  +L  D        S+    +G  +R+          +
Sbjct: 273 NFELSIVGKHNIYNALATLAVCHLLGVD---IKSTPSIIKKFKGTHRRFEFKGTLDGAII 329

Query: 342 IDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ID+ Y  +P  +KA +          ++    PH   R  ++L D     + +     D+
Sbjct: 330 IDD-YAHHPTEIKATLSSALNYPHNRIICIFQPHTYSRTYSLLQDFATSFDNA-----DI 383

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +  +Y          H   L   +  R    +Y +    +  +++S +  GD+V+   
Sbjct: 384 TIITDIYAAREKDTGIVHAKDLAKLIRDRGNETYYIKEFTDIVDYLRSIIKSGDLVITIG 443

Query: 452 SNSCGFYRLINLLLE 466
           +     Y + N+LL 
Sbjct: 444 AGDV--YEVGNMLLN 456


>gi|197285916|ref|YP_002151788.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227356423|ref|ZP_03840811.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
 gi|229620052|sp|B4F110|MURC_PROMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194683403|emb|CAR44145.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227163533|gb|EEI48454.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
          Length = 487

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 157/423 (37%), Gaps = 55/423 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             +AI G+ GKTTT  M+
Sbjct: 87  AISADNPEIIAAREARIPVIRRAEMLAELMRYR---------HGVAIAGTHGKTTTTAMI 137

Query: 127 TIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   +      T+   G     +    T AR+     + I E   S    +      ++P
Sbjct: 138 SNIYAQAGLDPTFVNGG----LVKSAGTHARLGCS-RYLIAEADESDASFLH-----LQP 187

Query: 185 HIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +AV+T I   H+       + +          L   G   +  DD     +  K     
Sbjct: 188 MVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGRAVMCIDDDVIRSIIPKV---- 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
            + I ++G S++AD ++  ++Q   Q +  +  +    ++VV +  G H A N    + +
Sbjct: 244 GRYITTYGFSEDADVRITHYEQKGAQGFFTISREDMPDLDVVLNAPGRHNALNATAAVAV 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMK 354
            +      +  + AL  F    G G+R+             Q    ++ + Y  +P  + 
Sbjct: 304 ATEEGIADEHILAALLNFQ---GTGRRFDFLGNFSLEHVNGQEGEVMLVDDYGHHPTEVD 360

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV 411
           A I       P  + R + +          ++  + D A VL+  +I   + V+ +G   
Sbjct: 361 ATIKAARAGWP--DKRLVMLF--QPHRYTRTRDLYEDFATVLNQVDILLLTDVYAAGEAP 416

Query: 412 LALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   D  +L R+I         +   ++ +   +   L D D+V+V+ + + G  ++   
Sbjct: 417 IPGADSRSLCRTIRQRGKLDPIWVSDVENISSILAGVLTDNDLVLVQGAGNIG--KIARR 474

Query: 464 LLE 466
           L E
Sbjct: 475 LAE 477


>gi|254291802|ref|ZP_04962587.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
 gi|150422314|gb|EDN14276.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
          Length = 506

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 138/407 (33%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++ +  +  G H A N    + + +    
Sbjct: 273 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLNITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 140/396 (35%), Gaps = 44/396 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV++ +      +       IPV    ++L  L +L            +A+ G+
Sbjct: 66  KDAAVVVVSSAIHRGNPEVEAALENRIPVVRRAEMLAELMRLKS---------TVAVAGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I   N  I           D D+ + E   S    +R
Sbjct: 117 HGKTTTTSMVAALLDAGGIDPTVI---NGGIINSYGSNARLGDSDWMVVEADESDGSFLR 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T I P HL ++   E++  A  E    +   G  FL  D    + + 
Sbjct: 174 -----LDGTLAIVTNIDPEHLDHYGSFEKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSIL 228

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGY 290
            +      + + ++G S  AD +       S  +     ++G+  ++           G 
Sbjct: 229 PRIR---DRRLITYGFSAQADIRAVDITPISGGNRFTAVIRGRDGDIRRIENIFLPMPGR 285

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  QN L  +G+    +          + F   + R  R           L+ + Y  +P
Sbjct: 286 HNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKICDGSVLVIDDYGHHP 345

Query: 351 ASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISH 403
             +KA +S   + +     R IAV+       + +L   F       D+  V  +Y    
Sbjct: 346 VEIKAVLSAARESAQQ---RVIAVVQPHRFLRLHDLMTEFQSAFNDADMVFVAPVYAAGE 402

Query: 404 VWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFI 437
             ++G    AL   L +  H      ++   L + +
Sbjct: 403 QPIAGVDSQALVSGLKQHGHRSAQAVDSPRSLAIAL 438


>gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
 gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
          Length = 483

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 97/419 (23%), Positives = 157/419 (37%), Gaps = 52/419 (12%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +      +       IP+     +L  L +L            IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  L  A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAEGGLDP------TFVIGGRLNSAGANARLGTGDFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E    L   G   L  DD     + 
Sbjct: 169 LN--LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---MEVVHHGIGYH 291
                   K +  +G +++A  +    +    +    V  QL G +   + +  +  G H
Sbjct: 227 ----PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNA 348
             QN L  + I + L    +  +KAL+ F+    R +RY     A  QG FTLID+ Y  
Sbjct: 283 NVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDD-YGH 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  M A ++      P     R  VL         ++    D  +VL   +   ++ V+
Sbjct: 342 HPVEMAATVAAARGAFPD----RRLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLLLAEVY 397

Query: 406 LSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +G   +   D   L R++ V       + E ++ +   I  +  D DVV+   + S G
Sbjct: 398 SAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVVITMGAGSIG 456


>gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
 gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
          Length = 513

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 165/473 (34%), Gaps = 43/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  A+ +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAA 68

Query: 68  VVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V+   + +A+  +  +   V  +D + G +               I +TG+ GKT+  + 
Sbjct: 69  VLYQPEGLAATPNAPVALAVPALDQLAGEIASGW-YGDPSDGLLAIGVTGTNGKTSCSQW 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGM 169
           +  AL+++ +  A IG+  + +   L               +LA++       +  E+  
Sbjct: 128 IAAALTALHQPCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L + R   +     IAV T +   HL      E   +AKA++F          +N DD
Sbjct: 188 HALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAW-RGLRAAVVNRDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +    L  K         Y  G ++ A     +      +  +  +   ++      +V 
Sbjct: 245 AAGRRLLEKLAGRVRTIAYGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDADVE 304

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  LG +       D A+  ++   P  GR +R      Q    L+  
Sbjct: 305 VGTLGTFNVSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRL-GGRLQNDEPLVVI 363

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  L  I+    GR + + G   +     +     +AE L+      V
Sbjct: 364 DYAHTPDALEKTLDALRPIAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLAD---DVV 420

Query: 405 WLSG----FHVLALKDALPRSI----HVHYSETMD-GLFLFIQSSLVDGDVVV 448
             S         A+ D +   +         E     +   ++ +  +  VV+
Sbjct: 421 VTSDNPRSEDPQAIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVL 473


>gi|153826877|ref|ZP_01979544.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229524386|ref|ZP_04413791.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
 gi|149739293|gb|EDM53549.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229337967|gb|EEO02984.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
          Length = 506

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 138/407 (33%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 273 YGFSDDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|86160190|ref|YP_466975.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|109892690|sp|Q2IG30|MURC_ANADE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85776701|gb|ABC83538.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 458

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 139/402 (34%), Gaps = 43/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V       IPV    ++L  L +L            +AI GS GKTTT  M
Sbjct: 75  SAVKRDNPEVLEARRRKIPVIPRAEMLAELMRLKYG---------VAIAGSHGKTTTTSM 125

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               L+       A +G   N  G    L +     D+ + E   S    +R     + P
Sbjct: 126 AAHLLAHAGLDPTAVVGGKVNAFGSNAKLGKG----DYMVVEADESDGSFLR-----IPP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA++T I P HL ++   + +     +    +   G   L  D    + +         
Sbjct: 177 TIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVE---- 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           K + ++G+S  AD++    +        +   + +++       +G H A N L  + + 
Sbjct: 233 KRVVTYGESHQADYRAEAIELSGHAVRFDAFRRDEALGRFEVAMVGRHNALNALAVIALG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +       +         +G  +R+         T++D+ Y  +PA +KA +    + 
Sbjct: 293 DEMGIPP---LVTREALRSFQGVQRRFTVRGEVAGVTVVDD-YGHHPAEVKATLQGAREA 348

Query: 364 SPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
                 RR+  L            M E + +F+  D+  +  +Y      + G     L 
Sbjct: 349 ----FKRRVVCLFQPHRYTRTRDLMAEFATAFNDADVLLLTDIYAAGEEPIPGATAANLA 404

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +A+    H  V        L    +  +  GD+V+   +   
Sbjct: 405 EAIRAWGHRDVTVVP-RAELARAARERIRPGDLVLTLGAGDV 445


>gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
 gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
          Length = 503

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 145/403 (35%), Gaps = 38/403 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P   + G++ D+R + P   F A+ G    G  ++  A+Q GA  VV +       G+ 
Sbjct: 23  LPAASIQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVVWDPQDEVDPGAA 82

Query: 82  S-------IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                   +P+ GV  +   L  +A            +IA+TG+ GKT+    +   LS 
Sbjct: 83  RTATEQSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLLSG 142

Query: 133 IKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            +  +  +G+  + +                +   LA        G+     SH  E   
Sbjct: 143 PEAPWGVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALEQGR 202

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L       +AV+T +   HL     +E  A AK+ +FE         LN DD+    L  
Sbjct: 203 LAGTAV-DLAVLTHLGRDHLDYHGSVEAYADAKSRLFEF-PSLRAQVLNLDDALGRRLHD 260

Query: 238 KSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++        +++      AD         ++   + + + G    V     G+    N+
Sbjct: 261 RAAGAA----FTYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANV 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +     L   +D  +  L    P  GR +++    +     L+   Y   P +++ A
Sbjct: 317 LAAVAAALALGRPMDGVLARLPTLRPVPGRMEQF----HADGSPLVVVDYAHTPGALEQA 372

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           ++ L     H  GR   V G   E     +    ++A  L+  
Sbjct: 373 LTALRA---HTTGRLCVVFGCGGERDTGKRPLMGEVAARLADR 412


>gi|302868924|ref|YP_003837561.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC
           27029]
 gi|302571783|gb|ADL47985.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC
           27029]
          Length = 493

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 150/399 (37%), Gaps = 36/399 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A   +    +A+ G+ GKT+T  M+T+ L             +
Sbjct: 94  VEARRRGLRVLHRSEALAAAMTGRRTVAVAGTHGKTSTTSMVTMVLQQAG--------TD 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +   ++ +      G  E  +    E      + RP ++++T I   HL+ +  + 
Sbjct: 146 PSFVIGGEISEVGSGAHHGTGEHFVVEADESDRSFLIYRPFVSIVTNIEADHLNTYGDLA 205

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            + +A AE     +  G +    DD+    L     A G + ++++G+S +AD ++ +  
Sbjct: 206 TLEAAFAEFARLTDPAGFVITCADDAGGRRLAETLRAEG-RRVWTYGESADADLRMSEVV 264

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             +     + +++G+ + E+     G HMA N    +    +L   V  A  AL  F   
Sbjct: 265 SSAHGVRFQAEVEGRPLGEIRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGTFPGV 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R           L+ + Y  +P SM  A+  L +++   +GR I V      +  
Sbjct: 325 RRRFER----KGAADGVLVYDEYAYHPTSMTLALQTLREVAG--DGRLIVVF-QPYRLYR 377

Query: 384 LSQSFHIDLAEVLSLYNI-SHVWL-----------SGFHVLALKDALP-RSIHVHYSETM 430
              +     AE+ +   I   V L            G    AL   +P  +    + E  
Sbjct: 378 TRDNQ----AEIAAALGIADEVVLLEVFGPGETRRPGEGSAALIQEVPLPAERKVFVEAW 433

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
           D +   +      GDVVV   +        +L++ LL  
Sbjct: 434 DDVPGEVARRARTGDVVVTMGAPPISLMGDQLLDALLAR 472


>gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
 gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 467

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 150/415 (36%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L + +     I      I    T AR+    ++ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGEFDPTVIN--GGIINAYGTNARLGAG-EWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   E + +A  +  E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFEAVQNAFRDFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIG 289
            K      + I ++G++  AD +L   K     S  +V  + +     H          G
Sbjct: 228 GKIE---DRRIITYGENPQADVRLLDLKPNGGASTFKVAFRDRKANTAHEIADLKLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+    +    ++ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAGFG---GVRRRFTKTGDWNGVSIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    +     + + IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARE---STKTKVIAVVQPHRFTRLQSLFEEFCTCFNDADAVIVAEVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H       +   L   + S    GD VV+  + + 
Sbjct: 398 EAPIPGIDRDNFVLGLRAHGHREVIPLQESAALAGVVHSIAKPGDYVVLLGAGNI 452


>gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi]
          Length = 523

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 161/491 (32%), Gaps = 79/491 (16%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR++     FFA++G H  G  +I  A+  GA  +V   D       + +   
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIV--HDCPLDTYVVGVYYA 83

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
            V D   AL+  A A         T+I +TG+ GK++T   +   L    K    I +  
Sbjct: 84  RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143

Query: 144 ------------NNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                       +      LT+ R+  +      +F + E     L         V   +
Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----------FLNYDDSFFELLK 236
           AV   +   HL      E+    KA +F  L+    I           L  +D+     +
Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDASAVYFR 263

Query: 237 AKSHALGIKTIYSFGKSKNADFQ--------------LRKWKQCSEQSWMEVQL------ 276
             +H    K  + F +   A+ +              ++   Q S+   +   L      
Sbjct: 264 EATH----KPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTVQEP 319

Query: 277 ----QGKSMEVVHHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331
               Q  + +V     G   A N+  +  ++  +L   +    + +    P +GR +R  
Sbjct: 320 AQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQR-- 377

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             + Q F  LID  Y   P+S +  +  L+      + R + + G   E     ++    
Sbjct: 378 VDMGQDFEVLID--YAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQ-- 433

Query: 392 LAEVLSLYNISHVWLS----GFH-------VLALKDALPRSIHVHYSETMDGLFLFIQSS 440
              + S Y    V       G         + A  +       +            I S 
Sbjct: 434 -GAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSL 492

Query: 441 LVDGDVVVVKS 451
               D+V++  
Sbjct: 493 ARAQDLVLLLG 503


>gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
 gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
          Length = 520

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/465 (18%), Positives = 154/465 (33%), Gaps = 56/465 (12%)

Query: 33  DSRSIAPQEAFFA--IKGPH--YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           D+R +A  + F A  +       DG   I  A+  GAG ++   D        ++P   +
Sbjct: 35  DTRRLARGDVFLAYVLGNERLSTDGRPHIAQAIAAGAGAILYEADGFDWTFGDTVPHLAL 94

Query: 89  DDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            + L  L                 +  +TG+ GKT+  + L   L +     A IG+   
Sbjct: 95  -NSLHQLAGPIAAGWYGNPARGVAVTGMTGTNGKTSCSQWLARLLQATGTPCATIGTLGT 153

Query: 146 H---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                           + +  +LA +       +     SH  E   +       +AV+T
Sbjct: 154 GFPDALQPTGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVA-GTHFSVAVLT 212

Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTI 247
            +   HL     + E  +AKA +F  +GL    T  +N DD     L A    A+    +
Sbjct: 213 NLTQDHLDYHGTMAEYEAAKARLFRWDGLR---TAVINRDDGMGRRLLASNGAAIAAPHV 269

Query: 248 YSFGKSKNAD----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +G    A            +    +  +  +   +     S +V    IG     N+L
Sbjct: 270 IEYGIDGPARASISGARGQWLRASGVRATATGTAFHIDGSFGSADVATPMIGAFNVSNLL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             LG         D A+ AL    P +GR + +     Q     + + Y   P +++  +
Sbjct: 330 AVLGAALANGVAWDAALAALRALSPVDGRMELFGAHAGQDGPLAVVD-YAHTPDALEKTL 388

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
             L  ++    GR   V G   +   + +     +AE L+      + L+  +       
Sbjct: 389 EALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGGVAERLA----DEIVLTSDNPRSEDPQ 444

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               A+ D +         E      L+        DVV+V  K 
Sbjct: 445 DILDAIADGMADRARGRQIEDRAAAILYAIKHAAGADVVLVAGKG 489


>gi|229507538|ref|ZP_04397043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
 gi|229355043|gb|EEO19964.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
          Length = 506

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 114 QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 164

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 165 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 216

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 217 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 272

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 273 YGFSEDADVRIENYRQNGQQGQFNVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 333 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 392 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 448

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 449 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 493


>gi|260773493|ref|ZP_05882409.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
 gi|260612632|gb|EEX37835.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
          Length = 487

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 135/401 (33%), Gaps = 40/401 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  ++T   S     
Sbjct: 100 AAREKRIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +                I E   S    +      ++P + ++T I   H
Sbjct: 151 ---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVTNIEADH 202

Query: 197 LSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +  +    E +     +    L   G   L  DD     L  +      + + ++G S++
Sbjct: 203 MDTYGGDFETLKQTFVDFLHNLPFYGQAVLCIDDPVVRELIPRIS----RHVITYGFSED 258

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  + Q  +Q    V  Q K  + +  +  G H A N    + + S    D D  +
Sbjct: 259 ADVRIADYHQQGQQGHFTVLRQDKADLAITLNIPGRHNALNAAAAIAVASEDDIDDDAIL 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A++       R              ++ + Y  +P  +   I      +   E R + +
Sbjct: 319 RAMASTQGTGRRFDHLGEFATGNGHVMLVDDYGHHPTEVDVTIKAAR--NGWTEKRLVMI 376

Query: 375 LGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                     ++  + D A V         L +Y+     ++G    +L   + R   + 
Sbjct: 377 F--QPHRYTRTRDLYDDFAHVLEQVDVLLMLDVYSAGEKPIAGADGRSLCRTIRRRGKID 434

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 435 PIFIPDSAALPAVLANILQDGDLVLTQGAGDIG--KIAKQL 473


>gi|167759619|ref|ZP_02431746.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
 gi|167662745|gb|EDS06875.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
          Length = 487

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 155/413 (37%), Gaps = 38/413 (9%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEML 126
           VVV T  +                L  L++  +  +L +   + IAI+G+ GKTTT  ML
Sbjct: 100 VVVYTAAIHEDNEEYAQAL--KKGLPMLSRAELLGQLMTNYDVPIAISGTHGKTTTTSML 157

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L          G  +  I V   L  +  ++  G  EL ++   E         P I
Sbjct: 158 SHIL--------LAGEMDPTISVGGILKAIGGNIKVGKSELFVTEACEYTNSFLHFFPKI 209

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +VI  I   HL  F  +++I S+  +  + L K GT+ +N      + L   +  L  + 
Sbjct: 210 SVILNIDEDHLDFFKDLDDIRSSFHKFAKLLPKDGTLIING---NIDKLDCITKGLDCR- 265

Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
           I  +G   + D+            +  ++   G  ++ +   + G H   N L  + +  
Sbjct: 266 IIKYGDDSSMDYSATNISHNKLGEASFDLVKAGVFVDRISLSVNGDHNVSNALAAIAVSD 325

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--- 361
           +L   +D   K L  F    G  +R+         T+ID+ Y  +P  + A ++      
Sbjct: 326 LLGVSLDKMKKGLKEFT---GTNRRFEYKGEMDGVTIIDD-YAHHPTEINATLTAAKYYP 381

Query: 362 ------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+  +  E   L+ + H+ L+++ +      +   G     + 
Sbjct: 382 HRELWCVFQPHTYTRTKALFHEFVE--ALAHADHVVLSDIYAARETDTL---GISSKDIA 436

Query: 416 DALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           DAL  +    +Y  + + +  F       GD+++   +       +   LL+ 
Sbjct: 437 DALKEKGCDAYYFSSFEDIQDFCVEKCQKGDLLITMGAGDV--VNIGEELLKR 487


>gi|120609516|ref|YP_969194.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
 gi|166222947|sp|A1TKD2|MURC_ACIAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120587980|gb|ABM31420.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 97/446 (21%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A  +GA  VV +T        V +     IPV     +L  L +L        
Sbjct: 56  GH---AAAHIEGADAVVTSTAVQSDNPEVIAARERKIPVVPRALMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               IAI G+ GKTTT  ++T  L+         IG   N  G    L +     ++ + 
Sbjct: 108 ----IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGRLNSAGANAKLGQG----EYIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P +AV+T I   H+  +      + SA  +    +   GT  
Sbjct: 160 EADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           L  D+     +           + S+G S++A  +    +  + +    VQ +       
Sbjct: 215 LCTDNPAIREILPDVTC----PVTSYGFSEDAQVRAVDVRADAGRMRFRVQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           ++VV +  G H   N L  + +   L    +  ++AL+ F     R +RY       G  
Sbjct: 271 LDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYGELPAQGGGT 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + E Y  +P  M A    L+       GRR  VL         ++    D  +V+   
Sbjct: 331 FTLIEDYGHHPVEMTA---TLAAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVKVMGSA 386

Query: 400 NI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +   D   L R++ V       + + +  L   I  +   GDVV+
Sbjct: 387 DAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARGGDVVL 446

Query: 449 VKSSNSCGF--YRLINLLLEEFPAIQ 472
              + S G    +++ +L  + PA+Q
Sbjct: 447 CMGAGSIGAVPAKVVEMLRTDVPAMQ 472


>gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
          Length = 511

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 157/479 (32%), Gaps = 58/479 (12%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +    +       V  +  DSR   P   F  + G   D H F+   ++ G  ++V   D
Sbjct: 10  LDYELVRGSLDVEVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVRVLVTERD 69

Query: 74  MVASIGSL--------SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123
           +   + +          + +    +   +L  L+ A      SK   I +TG+ GKTTT 
Sbjct: 70  IEEELAASGLAEHEMGRVTILKTAEARRSLALLSAARFGYPASKMITIGVTGTKGKTTTT 129

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGM 169
            M+   L +  K    IG+    I   +T                    +       + +
Sbjct: 130 HMIKAILEAAGKKVGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGCQYMIMEV 189

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S  G        +     + T I+P H+     +   E    K+ +           +N 
Sbjct: 190 SSQGIKMHRVDGLAFDYGIFTNISPDHIGPDEHADFAEYLCCKSRLLSMCR---IGLVNL 246

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCSE----QSWMEVQLQGK 279
           +D  F+ +   +       +Y++   ++    ADF+    +  S      +  +V     
Sbjct: 247 NDGHFKEIVKDASC----RLYTYCVKEDGETKADFEASNVRYVSRPDFVGTEFDV-TGNL 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M+V     G     N L  L + S L    D  + AL           R          
Sbjct: 302 DMDVRLGIPGLFNVDNALAALCVCSFLGLPKDRIVHALEHIRVNG----RMEIVYTSSRC 357

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++ + Y  N  SM++ ++ L Q  P    R + V G      +  +    ++   L+  
Sbjct: 358 TVLVD-YAHNAVSMESLLTTLRQYHP---RRLVVVFGCGGNRSKDRRYSMGEIGGRLADL 413

Query: 400 NI-----SHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +I     S        +  ++ ++ +     V   +  D +   I  +   GD++ V  
Sbjct: 414 SIITADNSRYEKVEDIMADIRGSIEKTGGDFVEIPDRRDAIRSSILHA-QPGDMIAVIG 471


>gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
 gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
          Length = 472

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 150/421 (35%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +   L IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 72  AISAENPEIQAAKELRIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 123 SGIYAQAGLD---PTFVNGGLVKSAGTHARLGSSRYLIAEADESDASFLH-----LQPLV 174

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       E +          L   G   +  DD     L  K      +
Sbjct: 175 AVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGRAVMCIDDPVIRSLLPKI----GR 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD ++ K++Q   Q +  +  +G   + VV +  G H A N    + + +
Sbjct: 231 YITTYGFSEDADVRITKYEQKGNQGFFTIAREGMPELTVVLNAPGRHNALNATAAVAVAT 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D    + AL  F    G G+R+        R    +    ++ + Y  +P  + A 
Sbjct: 291 EEGIDDLHILSALVEFQ---GTGRRFDFLGNYALRNVNGKEGDVMLVDDYGHHPTEVDAT 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA 413
           I       P  + R + V          ++  + D A VL   ++     V+ +G   + 
Sbjct: 348 IKAARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLGQVDVLLMLEVYSAGEKPVP 403

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I         +    + +   +   L D D+++V+ + + G  ++   L 
Sbjct: 404 GADSRSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDDNDLILVQGAGNIG--KIAKNLA 461

Query: 466 E 466
           E
Sbjct: 462 E 462


>gi|145297486|ref|YP_001140327.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|172044438|sp|A4SI57|MURC_AERS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|142850258|gb|ABO88579.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 484

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 153/403 (37%), Gaps = 38/403 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +   L IPV    ++L  L +             IAI G+ GKTTT  ++
Sbjct: 87  AIKQDNPELLAARELRIPVVRRAEMLAELMRFR---------HGIAIAGTHGKTTTTSLV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +   +           +    T AR+     + I E   S    +      ++P +
Sbjct: 138 ASIYAEADRDP--TFVIGGLLNSAGTNARLGSS-RYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +++T I   H+  +     ++ +   +    L   G   +  DD     +  +      +
Sbjct: 190 SIVTNIEADHMETYGGDFSKLKATFIDFLHNLPFYGLAVVCVDDPVIRGMLPEIA----R 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S +AD Q+  + Q S +S   V+ +    + V  +  G H A N    + + +
Sbjct: 246 PTITYGLSDDADVQVLDFVQTSNRSCFRVRRKDAGELAVTLNLPGIHNALNAAAAIAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  I AL+ F     R ++Y          ++ + Y  +P+ +K  I+      
Sbjct: 306 EDGIGDDAIICALAKFEGVGRRFQQYGEFETGRGKAMLVDDYGHHPSEVKVTINAARTGW 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALP 419
           P  + R + V          ++  + D ++VLS  ++     V+ +G   +   D  AL 
Sbjct: 366 P--DKRLVMVF--QPHRYTRTRDLYEDFSDVLSKVDVLVMLEVYAAGEEPIPGADGRALC 421

Query: 420 RSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           RSI         ++ T D +   +   + +GD+V+ + + + G
Sbjct: 422 RSIRSRGSLEPIFAATPDDVPAILADLIGEGDLVLTQGAGNVG 464


>gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 491

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 130/408 (31%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLRVTLNAPGRHNALNATAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGETPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQIATILAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 476

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 143/398 (35%), Gaps = 48/398 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV++ +      +       IPV    ++L  L +L            +A+ G+
Sbjct: 66  KDAAVVVVSSAIHRGNPEVEAALENRIPVVRRAEMLAELMRLKS---------TVAVAGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I   N  I           D D+ + E   S    +R
Sbjct: 117 HGKTTTTSMVAALLDAGGIDPTVI---NGGIINSYGSNARLGDSDWMVVEADESDGSFLR 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T I P HL ++   E++  A  E    +   G  FL  D    + + 
Sbjct: 174 -----LDGTLAIVTNIDPEHLDHYGSFEKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSIL 228

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGY 290
            +      + + ++G S  AD +       S  +     ++G+  ++           G 
Sbjct: 229 PRIR---DRRLITYGFSAQADIRAVDITPISGGNRFTAVIRGRDGDIRRIENIFLPMPGR 285

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  QN L  +G+    +          + F   + R  R           L+ + Y  +P
Sbjct: 286 HNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKIGDGSVLVIDDYGHHP 345

Query: 351 ASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNI 401
             +KA +S   + +     R IAV        L D+  M E   +F+  D+  V  +Y  
Sbjct: 346 VEIKAVLSAARESAQQ---RVIAVVQPHRFSRLHDL--MTEFQSAFNDADMVFVAPVYAA 400

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFI 437
               ++G    AL   L +  H      ++   L + +
Sbjct: 401 GEQPIAGVDSQALVSGLKQHGHRSAQAVDSPRSLAIAL 438


>gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
 gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
          Length = 459

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 146/430 (33%), Gaps = 45/430 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLG---------ALNKLAVAARLRS 106
                KGA + + +T    +   + +       D+V            L++  + ARL +
Sbjct: 43  EKLAAKGAKIYIGHTPEHIAGADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLN 102

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   IA+ G+ GKTTT  M+ + +           + +    +   +  +  +   G  E
Sbjct: 103 ERKGIAVAGAHGKTTTSSMIALVMERC--------NVDPTYIIGGEITNLGTNAKAGKSE 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P   ++T I   HL N+      + SA  +    +   G   +
Sbjct: 155 FVVAEADESDGSFLQYHPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD     +  +        + ++G    AD+     +    +    +  +G ++  + 
Sbjct: 215 CADDQNIREMLPQLQT----RVITYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIE 270

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N + T+          D     +  FH   G  +R++         +ID+
Sbjct: 271 LSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFH---GAKRRFQVLGESNDILIIDD 327

Query: 345 SYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            Y  +P  ++A IS              P    R   +L         S++  + + ++ 
Sbjct: 328 -YAHHPTEIEATISAARATGKRIIAVFQPQRYSRTFFLLDAFSR--AFSEASEVIITDIY 384

Query: 397 SLYNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           S      +   G H   L D +    + +  Y  T + +   ++  L  GD+V+   +  
Sbjct: 385 SPAGEKQI--EGVHSSKLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVLTMGAGD 442

Query: 455 CGFYRLINLL 464
              ++  + L
Sbjct: 443 I--WKAGDAL 450


>gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 114/253 (45%), Gaps = 23/253 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H +           +    VN   IDSR     + F  +KG + DGH FI    +KG
Sbjct: 1   MNLHQIANITGAK-FKNLSNKKVNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A     + ++  S       V  VDD L AL  +A   +       I ITG+ GKTTTKE
Sbjct: 60  AFGSFSSKNIEKSN------VLVVDDTLKALTDIAKYKKDFIDIK-IGITGTAGKTTTKE 112

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L+  LS     Y   G+YNN IG+P+TLA +  +  +G+FELG S  G+I +LT ++  
Sbjct: 113 ILSYLLSYFYPVYYTKGNYNNQIGLPITLANIDKNYRYGVFELGASKKGDISYLTDILNQ 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +IAVIT +   H     G E +   K  I +  +                +  K   +  
Sbjct: 173 NIAVITNVGYGHTEGLGGFEGVLQEKKNILKTADFK--------------IAPKWLNINE 218

Query: 245 KTIYSFGKSKNAD 257
           K I +FG  +NAD
Sbjct: 219 KNIKTFGY-ENAD 230


>gi|77917785|ref|YP_355600.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543868|gb|ABA87430.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
          Length = 419

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 144/377 (38%), Gaps = 17/377 (4%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D +           R   K  I+A+TGS GKTT    L   L      YA +   N    
Sbjct: 19  DRLWKECRARWHRFRYLRKTKILAVTGSCGKTTATYFLGRILGECGPCYAGVH-RNTSRA 77

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +   + +M     + + E+G+   G++      + P+I ++TTI   H ++F   E  A+
Sbjct: 78  IYKNMRKMRTSYRYLVQEMGVGFPGDMAKNIRALPPYIGIVTTIGLDHYTSFRNREGTAA 137

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-S 267
            K  +   L  +GT  LN DD     + +++ A    +I ++G S++ D +         
Sbjct: 138 EKGTLIAALPPSGTAVLNADDPHVMAMASQTQA----SILTYGCSEHVDVRGSAICSDWP 193

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           ++  + V    +S+ V     G  +  ++L  +         +       +  H  E   
Sbjct: 194 QRLSLNVTYGDRSVRVETGLFGDLLVTSLLAAIAGALAAGVSLAQCA---ASLHGVESFP 250

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R     +     +I++++ A   S++     +  +      R+  VLG   + G     
Sbjct: 251 ARLSIHRSPQGSWMINDTFKAPFWSVE---RTVGLMKNAVAPRKTVVLGVFSDTGGSGSR 307

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +  +A++        V   G +   ++       +  +   +  +  + F+  + +  +
Sbjct: 308 KYRAMAKLALEV-ADRVVFVGPNAAHVRKIQTAELADRLFTFDGFETAYRFLADTTIQNE 366

Query: 446 VVVVKSSNSC-GFYRLI 461
           +V++K S S     R++
Sbjct: 367 LVLLK-SGSIYHLERML 382


>gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
 gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
          Length = 512

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 166/476 (34%), Gaps = 50/476 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P      +  D+RS+   + F    G   DG D   FI  AV  G
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLQAGDVFL---GYAVDGADNRAFIADAVAGG 65

Query: 65  AGLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ +   V  +D + G +               I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAMPVALAVPALDQLAGEIASGW-YGDPSDSLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FE 166
            + +  AL+++ +  A IG+  + +   L               +LA++       +  E
Sbjct: 125 TQWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R   +     IAV T +   HL      +   +AKA++F          +N
Sbjct: 185 VSSHALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFAW-RGLRAAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSME 282
            DD+    L  K         Y  G ++  D          +  +  +   ++       
Sbjct: 242 RDDAAGCRLLEKLAGRVRTIAYGIGDAQGPDADRELVALDVRATATGTAFRLRSSWGDAH 301

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  ++      GR +R      Q    L+
Sbjct: 302 VEVGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRL-GGRLQNDEPLV 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L  I+    GR + + G   +     +     +AE L+     
Sbjct: 361 VIDYAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----D 416

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
            V ++  +  +         +   +    H    E     +   ++ ++ +  VV+
Sbjct: 417 EVVVTSDNPRSEDPQRIIDQVIAGMTAPDHARRIEDRASAILQAVRGAVREDVVVL 472


>gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 495

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 167/484 (34%), Gaps = 59/484 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  + +DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPARALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             +V   +  A+ G++     +PV  + ++   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L     ++ +T A +G+  N +                + +             
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVDQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F    + G + +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSE-HRVGQMVI 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRKWKQCSEQSWMEVQLQG 278
           N DD       AK     +    +     N          +  +       + +      
Sbjct: 240 NADDEVGLRWLAK-----LPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFDSSW 294

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E+    +G     NML+ L  +  L   +D  I A S   P  GR + +        
Sbjct: 295 GHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAK--- 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +   Y   P +++ A+        H +G+   V G   +  +  +     +AE L+ 
Sbjct: 352 -PTVVVDYAHTPDALEKALEA---ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLA- 406

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +  +         +   L  +  V                  + DVV+V
Sbjct: 407 ---DRVVVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLV 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1]
          Length = 459

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 152/414 (36%), Gaps = 43/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+  +  IP+    ++LG +               IA+ G+ GKTTT  M
Sbjct: 77  AAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDY--------SIAVAGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L             +  I V   L+ +  ++  G  E  +S   E        RP 
Sbjct: 129 ISEIL--------LAAQTDPTISVGGILSSIHGNLRVGDSEYFISEACEYTNSFLNFRPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++I  I   HL  F  I +I  +  E        G   +N +   +E + A       +
Sbjct: 181 YSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEIDRYEEIVAGLP----Q 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
            I ++G     DF         +  +      QG    +V     G H   N L  + + 
Sbjct: 237 KIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIALS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           + L  D ++ +  L  F    G  +R++        T+ID+ Y  +P  ++A ++   + 
Sbjct: 297 TTLGLDTESILTGLDKFG---GADRRFQYKGKVNGVTIIDD-YAHHPTEIRATLTAAQKY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L D  ++  ++     D+  +  +Y        G     +
Sbjct: 353 PHDRLVLCFQPHTYSRTKAFLNDFADVLSMA-----DVVVLADIYAAREQNTYGISSKDI 407

Query: 415 KD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            D  L + ++ HY  + + +  F+  + V+GD+++   + +     +   LL++
Sbjct: 408 LDLLLEKGVNAHYFPSFEEIEKFLSENCVNGDLLITMGAGNV--VEIGEDLLKK 459


>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 614

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 151/415 (36%), Gaps = 45/415 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G      V+GI+ DSR + P + F  + G  +DGHDF L AV    G V V  +     
Sbjct: 107 LGEDEDVEVSGIADDSRVVLPGDVFVCVPGATFDGHDFALDAVAA--GAVAVVCEGEIEG 164

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +  IP   V     AL K+A A       + T + +TG+ GKTTT  ++   L++   +
Sbjct: 165 LTDEIPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGVTGTNGKTTTTHLIQAILAANDVS 224

Query: 137 YACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLG----EIRFLTHLVR------- 183
              +G+    IG          P  +       GM   G     +   +H +        
Sbjct: 225 CGVVGTVGYEIGDGKYEVPNTTPDALQTQQILAGMIDAGAGACAMEVSSHALELGRVDEC 284

Query: 184 -PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-------KTGTIFLNYDDSFFELL 235
              +AV T ++  HL     +E+   AKA++F  L        K    F N         
Sbjct: 285 DFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNA-----AYF 339

Query: 236 KAKSHALGIKTIYSF----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +       I ++     K   AD  +   K    ++ + +Q      E V   +G  
Sbjct: 340 IEAAGGGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLTIQTPVGEFEAVCGVVGKI 399

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+   + +   L   +D     +    P  G   R         F++I + Y   P 
Sbjct: 400 NVTNIAAAVAVGVALEIPLDVIAAGVEEMTPVPG---RMELIDEGQPFSVIVD-YAHTPD 455

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++K AI+ L   +       I V G     G+   S   ++ E+   Y+   V++
Sbjct: 456 ALKRAITSLRAANVRN---VITVFGC---GGDRDASKRKEMGEIADTYS-DIVFV 503


>gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 485

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 153/455 (33%), Gaps = 44/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+++DSR++ P + FFA+ G   DG  F+  AV       V         G LS+
Sbjct: 19  DLTIGGLAVDSRAVKPGDLFFALAGAKTDGARFVAAAVA---AGAVAVAGEHRPEGDLSV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   + +   AL + A     R    I A+TG+ GKT+           +    A IG+ 
Sbjct: 76  PFVQLSNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHAAASIGTI 135

Query: 144 N---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                           + I +  +L  +  + +     E     L + R     VR    
Sbjct: 136 GLVTPTRSVYGSLTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRL--DGVRVAAG 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  H+     +    +AK  +F  L +  G   ++ D      +   + A G++ 
Sbjct: 194 GFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLR- 252

Query: 247 IYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + G+     A  +L           + V+  GK   +    +G    +N L+  G+V 
Sbjct: 253 LITIGRNGDPGAGIKLIDAAVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVI 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D   A  + +     EG   R      +    +  + Y   P ++   +  L    
Sbjct: 313 GTGGD---AAASFAALEHLEGAPGRLDLVGARNGAPVFVD-YAHKPDALAKTLQALR--- 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA------L 418
           P+ + + + V G   +     +     +A      N   V ++  +  +   A      L
Sbjct: 366 PYAKRKLVVVFGAGGDRDSGKRPLMGAIA----AENADVVIITDDNPRSEDPATIRAAIL 421

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                   L  GD +V+  K 
Sbjct: 422 AAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKG 456


>gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
          Length = 495

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 167/482 (34%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFG 163
           TTT ++L      + +T A +G+  N +   +                        V FG
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGVTFG 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G ++     ++   +V T ++  HL     +    +AK  ++      G  
Sbjct: 181 AMEVSSH--GLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQA 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD       A        ++     + N      +    +     + +        
Sbjct: 238 IVNADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGE 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA--- 406

Query: 401 ISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV-- 449
              V ++  +         + D L   +       M+G    + +++    D DVV++  
Sbjct: 407 -DIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|114777861|ref|ZP_01452792.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551852|gb|EAU54392.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 458

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 161/433 (37%), Gaps = 52/433 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GH     A  + A +VV+++ +  +   ++      IPV    ++L  L ++        
Sbjct: 58  GH---AAANVRDAQVVVLSSAINPANPEIAAAEKRGIPVIPRAEMLAELMRMKQG----- 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +A+ GS GKTT   ++   + +       I      +    + AR+     + + E
Sbjct: 110 ----VAVAGSHGKTTMTSLIAHGMEAAGMDPTYI--IGGRLTATGSNARLGAS-PWLVAE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +R     + P IAV++ I P HL ++     +  A       +   G + L+
Sbjct: 163 ADESDGSFLR-----LSPTIAVVSNIDPEHLDHYGDFATLQEAFRTFVNLVPFYGRVVLH 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVV 284
           ++      L+   H    K + ++G S  AD  L + +  SE        +  G   E  
Sbjct: 218 HEHPHVAALRLGLH----KPVTTYGSSLQADLHLLESRAGSEGQCFTAASREHGNLGEFH 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A+N L  + ++  L  D++T   AL+ F   + R +R  C        ++ +
Sbjct: 274 LPMPGRHNAENALAAMAVLMDLGIDIETIRSALASFEGIQRRFQRTSCGTG-----VMVD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--------VL 396
            Y  +P  + A +       P    R I+V+                +          +L
Sbjct: 329 DYAHHPREVLATLVAARDCWPE---RHISVIFQPHRFTRTRDLMDDFMGAFDTANEVSLL 385

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +Y  S   + G +  AL   +    H H S  E +D     ++  L  G +V++  + S
Sbjct: 386 PIYAASEAAIEGVNSQALCQGMLARGHRHVSLLENLDEAAAAVREQLAAGHIVLLMGAGS 445

Query: 455 CGFYRLINLLLEE 467
            G   L   L EE
Sbjct: 446 IG--ALAARLREE 456


>gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 495

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 165/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + + +    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKG 467


>gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
          Length = 477

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 150/423 (35%), Gaps = 46/423 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GHD     ++ G  +VVV++ +  +   +       IPV    ++L  L +         
Sbjct: 68  GHD--SQHIE-GCDVVVVSSAIDENNPEVRAARGRLIPVVPRAEMLAELMRFRYG----- 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L           + +    +   +  +  +   G  E
Sbjct: 120 ----IAVAGTHGKTTTTSLIAGILGEA--------NLDPTFVIGGQVNSIGANSRLGKGE 167

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E      L++P +AVIT +   H+         + +A  E    L   G   +
Sbjct: 168 YLVAEADESDASFLLLQPLLAVITNVDADHMDAYGGDFIALKAAFLEFLHHLPFYGLAVV 227

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEV 283
             DD     L         + + ++G  K AD+QL+  KQ   ++  +V   GK   + V
Sbjct: 228 CLDDPVLRELLPDI----GRPVLTYGTCKEADYQLQALKQIRARTQFQVARPGKDNWLTV 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V +  G H A N L  + +   L        + L  F     R + Y          L+ 
Sbjct: 284 VLNLPGAHNALNALAAIAVAHELGVADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLLV 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--------DLAEV 395
           + Y  +P  + A +     I      RR+ V+            F          D+  +
Sbjct: 344 DDYGHHPRELAATLEA---IRVGWPERRLVVIFQPHRYTRTRDLFEAFIQVLSQVDVLFL 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y    V + G    AL  A+     V     E  + +   +   L +GD+++   + 
Sbjct: 401 LEVYPAGEVPIGGADSRALWQAIQARGQVRPILVEDKEIIEEMLLDLLREGDLLLTVGAG 460

Query: 454 SCG 456
             G
Sbjct: 461 DIG 463


>gi|255320030|ref|ZP_05361226.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
 gi|255302898|gb|EET82119.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
          Length = 482

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 145/423 (34%), Gaps = 47/423 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA    K A ++VV+T +      +       IPV    ++LG L +          
Sbjct: 71  FIGHAADNIKNASVLVVSTAIDPENPEVKAAIEQRIPVVRRAEMLGELMRYR-------- 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  +LT  L+            +    +   L R  V+   G    
Sbjct: 123 -HGIAVAGTHGKTTTTSLLTCMLAEEG--------MDPTYVIGGLLNRTGVNAALGASRY 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       + P  A++T I   H+  +    + +     +    L   G   + 
Sbjct: 174 IVAEADESDASFLHLEPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAVVC 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD+    +  +      + + ++G + + D +    +Q   +S   V  + +  + +  
Sbjct: 234 GDDANIREIMPRIA----RPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRLTI 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  +G+ +          +AL  F     R +       +     + + 
Sbjct: 290 NQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGLEQGTVKLVDD 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------- 398
           Y  +P  ++A I    Q   H + R + +          ++    D  +VLS        
Sbjct: 350 YGHHPKEVEATIKAARQ--SHPDRRLVMMF--QPHRFSRTRDCFDDFVDVLSQVDQLLLL 405

Query: 399 --YNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSSN 453
             Y      + G    +L  ++     V           L   IQ  L   D+++ + + 
Sbjct: 406 EVYPAGEKPIVGADSRSLARSIRLRGEVEPILIDPVQGNLQNVIQKVLQPNDLLLTQGAG 465

Query: 454 SCG 456
           + G
Sbjct: 466 NVG 468


>gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
 gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
          Length = 476

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 146/418 (34%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 72  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMV 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +     +        + I E   S    +      ++P +
Sbjct: 123 SSIYAEAGLD---PTFVNGGLVKAAGVHARLGSSRYLIAEADESDASFLH-----LQPMV 174

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 175 AIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVVRELLPRV----GR 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++ Q KS+  V  +  G H A N    + + +
Sbjct: 231 HITTYGFSDDADVQIASYRQIGPQGHFTLRRQDKSLLTVTLNAPGRHNALNAAAAVAVAT 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               D +  ++ALS F     R              +    ++ + Y  +P  + A I  
Sbjct: 291 EEGIDDEAILRALSSFQGTGRRFDFLGNFPLEKVNGKSGSVMLVDDYGHHPTEVSATIKA 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                P  + R + V          ++  + D A VL   ++     V+ +G   +   D
Sbjct: 351 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLEDVDVLLMLDVYAAGETAIPGAD 406

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L R+I              D +   +   L D D+++V+ + + G  ++   L E
Sbjct: 407 SRSLCRTIRNRGQLDPILVSDSDSVPSVLAKVLNDNDLILVQGAGNIG--KVARNLAE 462


>gi|209884384|ref|YP_002288241.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
 gi|209872580|gb|ACI92376.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
          Length = 482

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/432 (20%), Positives = 160/432 (37%), Gaps = 56/432 (12%)

Query: 44  FAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
              K  + +G D   +  A+++       +   + +  +  IPV    ++L  L +L   
Sbjct: 72  VGHKAENVNGADVLVVSTAIKR-------DNPELMAARAQRIPVVRRAEMLAELMRLKSC 124

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    IAI G+ GKTTT  M+   L   ++  T    G  N +     T AR+   
Sbjct: 125 ---------IAIAGTHGKTTTTSMVATLLDAGALDPTVINGGIINAY----GTNARLGEG 171

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + E   S    ++     +   +A++T + P HL +F   E +  A     EG+  
Sbjct: 172 -EWMVVEADESDGTFLK-----LPVDVAIVTNVDPEHLDHFKTFEAVQDAFRHFVEGVPF 225

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +  D +  + L  +      + I ++G++  AD +L   +     S  +V+++ +
Sbjct: 226 YGFAVMCIDHAVVQALVGRIE---DRRIITYGENPQADARLVDLQPFPGGSKFKVEVRHR 282

Query: 280 S-------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                    ++V    G H A N    + +   +    +   KAL+ F   +   +R+  
Sbjct: 283 KAGAAHVIADLVLPMPGRHNALNATAAIAVAHEIGMSDEAIRKALAGFGGVK---RRFTR 339

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-- 388
                  T+ID+ Y  +P  + A +      +    GR IAV+       +  L + F  
Sbjct: 340 TGEWNGVTVIDD-YGHHPVEIAAVLKAARDTAT---GRVIAVVQPHRFSRLHTLFEEFCT 395

Query: 389 ---HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
                D   V  +Y      + G    A    L    H  V   E+   L   ++     
Sbjct: 396 CFNDADTVIVADVYPAGEAPIPGIDRDAFVLGLRAHGHREVIALESAAQLASIVRRIAQP 455

Query: 444 GDVVVVKSSNSC 455
           GD VV   + S 
Sbjct: 456 GDFVVCLGAGSI 467


>gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 495

 Score =  163 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 165/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  + +DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L          +  ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYNEPSDQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT +++      + +T A +G+  N +   ++           +               
Sbjct: 121 TTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLAGQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +F      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFS-THHYGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAVEVNYHDSGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +       P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPMAELLNTAERLQPVCG---RMEVFSAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALEA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +    +  ++G    + +++    + DVV++  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKG 467


>gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 465

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 157/435 (36%), Gaps = 48/435 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
                 + DG D +++        V  +   +     L+IP      +LG + K      
Sbjct: 58  IPHSASNVDGADLVVYT-----AAVKEDNPEMIRARELNIPTIDRATLLGEIMKKYTYG- 111

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                  + + GS GKTTT  ++++ L  +        +Y+  + V   +  +  +V  G
Sbjct: 112 -------VGVAGSHGKTTTTSLISVLLEEM--------NYDPTVLVGGEVDIIGGNVRVG 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  ++   E         P+IAVI  +   HL  F  I+ I  +  +    +   G +
Sbjct: 157 NSEYFITEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPNDGFV 216

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSME 282
               DD     +    +    + I +FG   N  +  +  K   +     +V   G  +E
Sbjct: 217 VACGDDPNTMSVLKNVN----RNIITFGLDSNCTWNAKNIKFDEKGFPSFDVYHNGTFVE 272

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L TL +  +L  D+        +    +G  +R+          +
Sbjct: 273 RFELSIVGKHNILNALATLSVCHLLGVDIKK---TPDIIKKFKGTHRRFEFKGTIDGAVI 329

Query: 342 IDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ID+ Y  +P  +KA +          ++    PH   R  ++L D     + +     D+
Sbjct: 330 IDD-YAHHPTEIKATLSSALNYPHNRIICVFQPHTYTRTYSLLNDFAASFDDA-----DI 383

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +  +Y              L + +  R   V+Y +    +  +++ ++ +GD+V+   
Sbjct: 384 TIITDIYAAREKDTGIVRAEDLANLIKDRGNEVYYIKEFSDIVDYLKGTIKNGDLVITIG 443

Query: 452 SNSCGFYRLINLLLE 466
           +     Y + N+LL 
Sbjct: 444 AGDV--YEIGNMLLN 456


>gi|23011653|ref|ZP_00051948.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 194

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 99/179 (55%)

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H+A N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   LIDESYNAN
Sbjct: 1   RHVAMNSLGVLACIHALGADLARAALSLAGLKPPVGRGERTALRIGGGEAFLIDESYNAN 60

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           PAS++AA + L+ +    +GRRIAVLGDM E+G   ++ H +LAE ++   I  V+ +G 
Sbjct: 61  PASIRAAFATLAGVETGPKGRRIAVLGDMKELGAAGEAHHRELAEAVAANGIDLVFTAGP 120

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +  L +ALP ++    +     L   + ++L  GD V+VK SNS    +++  +   +
Sbjct: 121 LMAHLFEALPVAVRGTAAPKAAELTDAVLATLRPGDAVMVKGSNSMRMGQIVEAVKARY 179


>gi|332142423|ref|YP_004428161.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552445|gb|AEA99163.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 481

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 150/402 (37%), Gaps = 44/402 (10%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KK 135
                IP+    ++L  L +             IAI G+ GKTTT  +++   +      
Sbjct: 94  AREQRIPIIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTSLISTIFAEAEYDP 144

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           T+   G  N+      T AR+     + I E   S    +      ++P ++V+T I   
Sbjct: 145 TFVIGGLLNS----AGTNARLGKS-RYLIAEADESDASFLH-----LQPMVSVVTNIEAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           H+  +     ++     +    L   G   +  DD+  + ++ +      ++I ++G   
Sbjct: 195 HMDTYGGDFSKVKDTFVDFLSNLPFYGQAIVCGDDANIQEIRPRI----GRSIITYGFES 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + D++         ++   V       +++  +  G H   N L  + + +    + +  
Sbjct: 251 HNDYRAENISLSFGKANFTVIRPDHDPLKITLNLTGNHNVLNALAAIAVATDEGVNDEAI 310

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I+AL+ F     R ++            + + Y  +P  ++A I+      P  + R + 
Sbjct: 311 IRALAGFGGIGRRFEQLGTFNTSKGEVCLVDDYGHHPTEVRATIAAARANWP--DKRLVM 368

Query: 374 VLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHV 424
           V          ++  + D  EVLS         +Y  S   + G    +L  ++ +   +
Sbjct: 369 VY--QPHRFTRTRDLYEDFVEVLSSVDALLLLDVYAASEQPIEGADSKSLCRSIRQRGQI 426

Query: 425 H--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              Y    D L   + + + DGD+V+ + + + G  ++  LL
Sbjct: 427 EPVYVGDKDALPGILANIMQDGDIVMTQGAGNIG--QIAKLL 466


>gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 495

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 495

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
          Length = 471

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 171/455 (37%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   L+KL      +  +   ++ +TG+ GKTTT ++L     ++ +T A +G+  
Sbjct: 62  YLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWGQALGETSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  VD       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA---KSHALGIKTI 247
            ++  HL     +    +AK  +F   +      +N DD       +   ++ A+ ++  
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLSQLPQAVAVSMENN 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              G  K       +       + +         +     +G     N+L+ L  +  L 
Sbjct: 241 VPAGW-KGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLLSLG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   + A     P  GR + +    N      +   Y   P +++ A   L+    H 
Sbjct: 300 YPLAQLLAAAPQLLPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
           +G+   V G   +  +  +     +AE L+      V ++  +  +      + D L   
Sbjct: 353 KGQLWCVFGCGGDRDKGKRPLMGGIAEQLA----DRVVVTDDNPRSEEPQAIVADILSGL 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +   +++ + G    + S++    + DVVV+  K 
Sbjct: 409 LDAGHAQAIHGRAEAVTSAIMQAKEDDVVVIAGKG 443


>gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 16-3]
 gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 60-1]
          Length = 471

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 158/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 YAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 502

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 170/460 (36%), Gaps = 44/460 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-----VNTDMVASIG 79
             + GI++ S  +   + F AI G   DG  +I  A+ +GAG ++     V  D V+   
Sbjct: 28  ITIKGITLKSDEVTTGDLFVAIVGHETDGRHYIPQALSQGAGAILAEAEGVVNDDVSVDQ 87

Query: 80  SLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  + ++   L++L         S+  ++ ITG+ GKTT  ++L     ++ +  
Sbjct: 88  IQGVPIVYLFNLNQYLSQLAGEFYHHPASQLNLVGITGTNGKTTNTQLLAQWTMALGEVS 147

Query: 138 ACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHL 181
           A +G+  N +   L+  +                +     F   E+    L  ++     
Sbjct: 148 AVLGTLGNGLLRQLSSNQNTTASAIEVQQILSNMLTHKATFAAMEVSSHAL--VQHRVAA 205

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--- 238
           +    +V + ++  HL     +     AK  +F   E      +N DD   +    +   
Sbjct: 206 LPFAASVFSNLSRDHLDYHGDMANYEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPN 264

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A+        G  + A    +K +     + +         E+    +G     N+L+
Sbjct: 265 AVAVSTSHQIPSGL-QGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILL 323

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           TL  +  L   +D  +KA S   P  GR + ++     G  T+I + Y   P ++K    
Sbjct: 324 TLATLLALKYPLDALLKAASKLQPIPGRMEVFKKV---GRPTVIVD-YAHTPDALK---Q 376

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV--LA 413
            L+    H +G+   + G   +  +  +     +AE L+   +    +       +    
Sbjct: 377 ALAASRMHCQGKLWCLFGCGGDRDKGKRPLMGKIAETLADQMVITDDNPRTESPKMITAD 436

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   + ++      +        I +  +  DV+++  K 
Sbjct: 437 ILKGVLKTDRASVIQDRTEAITHILNQAMPEDVILIAGKG 476


>gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 57-2]
          Length = 471

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 158/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 YAKVMEGRAEAVTCAVIQAKENDVVLVAGKG 443


>gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 511

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 95/492 (19%), Positives = 177/492 (35%), Gaps = 84/492 (17%)

Query: 5   WTFHDLLQ-----------AIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGP 49
            T  +++             + G      P+   N     +S DSR++     FF  KG 
Sbjct: 3   MTLSEIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVA--ARL 104
            +D   ++  A  +GA + +   D  A +       +P   V D+  A+  ++ A     
Sbjct: 62  KFDP-KYLTMAANQGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFP 120

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGV------------PL 151
               T+I  TG+ GKTT+       ++ ++ K  A + S +  +               L
Sbjct: 121 DRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESL 180

Query: 152 TLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIE 204
            L RM  +       + + E+        +     +   I V   I+P H+S       E
Sbjct: 181 DLFRMMKEAVDNQMKYLVMEVSSQAYK--KSRVFGLPLDIGVFLNISPDHISPVEHPSFE 238

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKW 263
           +  + K+EI +       + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R  
Sbjct: 239 DYLACKSEIIDNCR---ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR-- 292

Query: 264 KQCSEQSWMEVQLQGKSM-----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               E  +  V     ++     +      G     N L  L + + +    +      +
Sbjct: 293 --LGEHGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSED---FRA 347

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+       QG    +D  Y  N  S+ A+ + +       +GR I V+G  
Sbjct: 348 GLAETTVPGRMEFIKDKQGVVACVD--YAHNYLSLTASFNFMKH--EFKDGRLIVVIGA- 402

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
              G  ++S   D+   LS Y      L+                 ++ E    +   I+
Sbjct: 403 --AGGKAESRRKDIGRALSQY-ADVAILTSED--------------NFFEDPHQIAADIK 445

Query: 439 SSLVDGDV-VVV 449
            ++ + D+ V+V
Sbjct: 446 ENIDNPDLEVIV 457


>gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
 gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
          Length = 459

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 152/414 (36%), Gaps = 43/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+  +  IP+    ++LG +               IA+ G+ GKTTT  M
Sbjct: 77  AAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDY--------SIAVAGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L             +  I V   L+ +  ++  G  E  +S   E        RP 
Sbjct: 129 ISEIL--------LAAQTDPTISVGGILSSIHGNLRVGDSEYFISEACEYTNSFLNFRPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++I  I   HL  F  I +I  +  E        G   +N +   +E + A       +
Sbjct: 181 YSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEIDRYEEIVAGLP----Q 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
            I ++G     DF         +  +      QG    +V     G H   N L  + + 
Sbjct: 237 KIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIALS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           + L  D ++ +  L  F    G  +R++        T+ID+ Y  +P  ++A ++   + 
Sbjct: 297 TTLGLDEESILTGLDKFG---GADRRFQYKGKVNGVTIIDD-YAHHPTEIRATLTAAQKY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L D  ++  ++     D+  +  +Y        G     +
Sbjct: 353 PHDRLVLCFQPHTYSRTKAFLNDFADVLSMA-----DVVVLADIYAAREQNTYGISSKDI 407

Query: 415 KD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            D  L + ++ HY  + + +  F+  + V+GD+++   + +     +   LL++
Sbjct: 408 LDLLLEKGVNAHYFPSFEEIEKFLSENCVNGDLLITMGAGNV--VEIGEDLLKK 459


>gi|56459548|ref|YP_154829.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363510|sp|Q5R0M0|MURC_IDILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56178558|gb|AAV81280.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
          Length = 490

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 162/420 (38%), Gaps = 53/420 (12%)

Query: 64  GAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV++ +        +   L +PV    ++L  L +             IA+ G+ 
Sbjct: 82  GASVVVVSSAIKADNAELVAAHQLRVPVVRRAEMLAELMRFR---------HGIAVAGTH 132

Query: 118 GKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++    +   +     IG   N  G    L     +  + I E   S    + 
Sbjct: 133 GKTTTTSLVASIFAEAGRDPTFVIGGLLNSAGSNARLG----NSKYLIAEADESDASFLH 188

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +A++T I   H+  +     ++     E    L   G   +  DD     L
Sbjct: 189 -----LQPMVAIVTNIEADHMDTYEGDFNKLLDTYVEFLHNLPFYGLAVMCVDDPVVSDL 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQ 294
             +      +   ++G S+ AD +   +KQ + +S   +  +G K ++V  +  G H   
Sbjct: 244 IPRL----GRQTMTYGFSEAADVRAIDYKQTASESCFTILRKGLKPLDVCLNLPGKHNVL 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQGFFTLIDESYN 347
           N L  + + +    + +    AL+ F     R + Y       + +  +    ++ + Y 
Sbjct: 300 NALAAVAVATDEGINDEAIKSALNKFEGIGRRFQHYGNFAISDKDSNKEPGEVMLVDDYG 359

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHV 404
            +P+ + A I    +  P     R  V+         ++  + D   VLS  ++     V
Sbjct: 360 HHPSEVAATIQAAREGWPE----RRLVMAFQPHRYSRTRDLYEDFVNVLSQVDVLLMLEV 415

Query: 405 WLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G   ++  D  +L RSI         Y  T+D +   ++S L  GD+++ + + + G
Sbjct: 416 YSAGETPVSGADSRSLCRSIRQRGQIDPVYVATVDDMPEVLESVLAPGDLLLTQGAGNIG 475


>gi|148257416|ref|YP_001242001.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|166222959|sp|A5EPK1|MURC_BRASB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146409589|gb|ABQ38095.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 467

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 145/415 (34%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  AGADVVVVSTAIKRDNPELMTARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    D+ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGGIDPTVIN--GGIINAYGTNARLGAG-DWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFDAVQDAFRAFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G +  AD +L      +  S  +V  + +         ++     G
Sbjct: 228 GKIE---DRRIITYGVNPQADVRLVDLSPANGSSRFKVVFRDRKSGATHEISDITLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    +   KA++ F   +   +R+         T+ID+ Y  +
Sbjct: 285 RHNASNATAAIAVAHELGISDEAIRKAIAGFGGVK---RRFTRTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    +      G+ IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARE---STSGKVIAVVQPHRYTRLQSLFEEFCTCFNDADAVIVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H  V        L   ++     GD+VV   + + 
Sbjct: 398 EAPIEGIDRDHFVLGLRAHGHRDVLPLPQAADLAGIVKRLAKSGDLVVCLGAGNI 452


>gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 528

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 95/461 (20%), Positives = 155/461 (33%), Gaps = 46/461 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84
           + G+S+DS   AP E F  + G    G  F   AV  GA  V+ + D       +    P
Sbjct: 47  ILGVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGALIAHEVAPGTP 106

Query: 85  VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   DD    +  L+              A+TG+ GKTTT   L   LS+        G+
Sbjct: 107 VLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVAGT 166

Query: 143 YNNHI-----------GVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +                L RM     +   G   L  S    +      V   +A 
Sbjct: 167 VELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDVAG 226

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AKA +F   E      +  DD +   L A++  + +  + 
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKARLFTP-EHARRGVICVDDQWGAALAAQAP-IEVDRVR 284

Query: 249 SFGKSKNADFQLRK--WKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           ++     AD+ +           +   +    G+ +E      G    QN  + L +   
Sbjct: 285 AYPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIR 344

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 TA  AL+  H   GR +R      +    ++D  +   P +M  A+  +  I+P
Sbjct: 345 AGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVD--FAHTPEAMDLALKAVRPITP 402

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRS 421
              GR I V G     G+  Q     L EV +      V             +++A+   
Sbjct: 403 ---GRLIVVFGS---DGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDG 456

Query: 422 IHVHYS--ETMDGLFLFIQSSLV-------DGDVVVV--KS 451
           I       E ++ +  +   ++          D V+V  K 
Sbjct: 457 IRTVRPGLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTGKG 497


>gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
 gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
          Length = 557

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 158/528 (29%), Gaps = 98/528 (18%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL   Q  + G      +  I  DSR++     FFA+ G H  G+ FI  A+ +GA 
Sbjct: 5   LSQLLTGFQHETAGGSSDPIITDICFDSRAVRAGSLFFALPGTHVHGNAFIAKAIARGAA 64

Query: 67  LVVVNTDMVASI--------GSLSIPVFG-VDDVLGALNKLAVAAR--LRSKATIIAITG 115
            +V   D+                 PV   V D   A++  A A       K  +I +TG
Sbjct: 65  AIVYQDDLPEDALRAAEERNNEAEAPVLVRVRDARFAMSPAADAFYDSPSEKLAVIGVTG 124

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARMPV 158
           + GK++T   +   L    K    I +    +                  V   L  M  
Sbjct: 125 TEGKSSTVSFIWQLLGLCGKKAGFISTVQYSLGDDAIANPEHQTTPEAPIVQRQLYEMVQ 184

Query: 159 D-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           +  ++ + E     L         VR    V   +   HL      E+  S KA +F  L
Sbjct: 185 NGCEYAVVESSSHGLSRKTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYKSDKANLFRAL 244

Query: 218 EKTGTI--------------FLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNAD-- 257
           +    +               +N +D         +     KT+Y F       KNAD  
Sbjct: 245 DAHDHLKTIGGTRRRVPAFGVVNLEDPAAAYFNDATE----KTVYGFTTGGAAGKNADIP 300

Query: 258 ----------FQLRKWKQCSEQSWMEVQLQGKS---------MEVVHHGIGYHMAQNMLM 298
                     F   +    S+       +             + V     G     N+L 
Sbjct: 301 LPEIPAEIPRFSADRVAAKSDGIAFTANVPPSDTIRATAPDPVAVTAPLPGAFNVYNVLA 360

Query: 299 TL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +L  + +I         +      P +G   R         F +I + Y   P+S +   
Sbjct: 361 SLITVSTITGIPFARVAEKCPQLQPVKG---RMTVIDKGQPFEVIVD-YAHTPSSFETIF 416

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
             L + + +    RI VL      GE       +   + + +    V L+          
Sbjct: 417 PPLRKRARN----RIIVL--FGSGGERDTKKRPEQGRIAARW-CDVVILADEDPRAEDPA 469

Query: 413 ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           AL + +              ++             +   +GD+V++  
Sbjct: 470 ALLEMIAAGCRSAGKTEGNGLYVVPPRPQAIRKAFALAAEGDIVLLLG 517


>gi|326388919|ref|ZP_08210501.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206519|gb|EGD57354.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 474

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 137/406 (33%), Gaps = 42/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV    ++L  L +L            +A+ G+ GKTTT  M+
Sbjct: 76  AVRRDNPEVVAALEARIPVVRRAEMLAELMRL---------KNTVAVAGTHGKTTTTSMV 126

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I   N  I           D D+ + E   S    +R     +   I
Sbjct: 127 ACLLDAGGIDPTVI---NGGIINSYGSNARLGDSDWMVVEADESDGSFLR-----LDGTI 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I P HL ++   + + +A  E  E +   G   L  D    + +         + 
Sbjct: 179 AVVTNIDPEHLDHYGSFDRVKAAFVEFIENVPFYGAAMLCIDHPVVQAIIPMVR---DRR 235

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------MEVVHHGIGYHMAQNMLMTL 300
           + ++G S  +D +          +     L+ +        ++V    G H  QN L  +
Sbjct: 236 VITYGFSAQSDVRGEAVIPVPGGNRFTAVLRQRDGTFHRIEDIVLPMPGRHNVQNALAAI 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   +    D      + F   + R  +       G    + + Y  +P  ++A   VL
Sbjct: 296 AVAREMGVADDVIRDGFAKFGGVKRRFTKVGEIEVDGGLVTVIDDYGHHPVEIRA---VL 352

Query: 361 SQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
           +       GR IAV        L D  E  E   +FH  D+  V  +Y      + G   
Sbjct: 353 AAAREGARGRVIAVVQPHRFTRLRDHME--EFQSAFHDADVVFVTPVYAAGEAPIEGVDA 410

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             + + +    H   H    +  L   +   +   D++V   +   
Sbjct: 411 AVMVEGIKARGHRSAHSIAGVGELARELAPMVRADDMIVCLGAGDI 456


>gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 477

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 145/419 (34%), Gaps = 41/419 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    D+L  L +           T + + G+ GKT+T  M
Sbjct: 79  AAIPQDNPELVAAREADIPVIRRSDLLAELMQ---------DRTQVLLAGTHGKTSTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  AL +  K        +    +   L R   +   G  ++ ++   E         P 
Sbjct: 130 VVSALQAAGK--------DPSFAIGGQLNRAGTNAHHGKDDIFVAEADESDASLLRYDPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I P HL  F   E       +  E ++  GT+ +  +D     L  ++   G++
Sbjct: 182 IAVITNIEPDHLDYFGSAEAYFQVFDDFAERIKPNGTLIVCVEDEHAAELGRRAVESGVQ 241

Query: 246 TIYSFGKSK----NADFQ----LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +G SK    + D      +   +   E + + V+L    +       G+HM  N  
Sbjct: 242 -VVGYGSSKALAQHPDITPGAEILTEEVGRETTAVTVKLPSGEVSYDLQIPGHHMVLNSA 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +  A      + LS F    G  +R+      G    + + Y  +P  + A +
Sbjct: 301 AALIAGELAGAKAQALAEGLSDFT---GVRRRFEYRGTAGDNIRVYDDYAHHPTEVAAVL 357

Query: 358 SVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLS 407
               + ++  G G R+ V      +   +  F  + A+         +L ++      + 
Sbjct: 358 GAAREKVTAEGLGGRVVVCFQ-PHLFSRTIEFANEFAKALSLADAVVLLDIFGAREQPVE 416

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           G     + D +   + V Y          +       D+V+   + S    +   +L E
Sbjct: 417 GVSSRIISDKIADDVDVTYEPDFSAARQTVAEMTNSNDLVLTMGAGSVTL-QAAEILEE 474


>gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
 gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
          Length = 495

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 174/482 (36%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL           P+  +  +++DSR  A  + F A+KG   DG ++I  A+ +G 
Sbjct: 5   NLRDLL----APWGVDTPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+         G++     +PV  +DD+   L+KL         +K  ++ +TG+ GK
Sbjct: 61  AAVIAEAKGKTDNGTIQAMHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFG 163
           TTT ++L      + +  A +G+  N                + + L L ++      F 
Sbjct: 121 TTTTQLLAQWSQGLGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+    L + R     +    AV T ++  HL     +E    AK  +F         
Sbjct: 181 AMEVSSHGLVQGR--VAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSS-HDVKQK 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD   +    +       T+     K+ +             + + +         
Sbjct: 238 IINADDDVGQKWLTRLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQG 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G     N+L+ L  +  L   +   ++A S   P  G   R      +   T+
Sbjct: 298 TLNSPLMGAFNVSNLLLALATLLSLEYPLQKLLEAASCLEPVCG---RMEVFAARDRPTV 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++ A   LS    H +G+   V G   +  +  +S    +AE       
Sbjct: 355 VVD-YAHTPDALEKA---LSAARLHCKGQLWCVFGCGGDRDKGKRSLMGGIAE----QGA 406

Query: 402 SHVWLSGFHVLALK-DALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVV-- 449
             V ++  +  + +  ++   I   + +          ++ +   I  +  + DVV+V  
Sbjct: 407 DRVIVTDDNPRSEEPHSIVEDILTGFIDPGRAMAIHGRVEAVTSAIMQAAEE-DVVLVAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 495

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 169/412 (41%), Gaps = 59/412 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFIL 58
           M   ++        +   IG   +  +  I  DSR I       FFA+ G    G++FI 
Sbjct: 1   MRLNYSIEACASIFEATIIGSSSES-ITHIYFDSRKIQQANGALFFALSGHSRSGNEFIE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +A Q+G    V+  +  +     ++  F V++ L AL +LA   R +    ++AITGSVG
Sbjct: 60  NAYQQGIRFFVIAKNASSKFHPDAL-YFQVEEPLTALQQLATHHRKQYTYPVVAITGSVG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT KE +   +S   K      S+N+ IGV L+L  M  +      E G+S  GE++ L
Sbjct: 119 KTTFKEWIFHCISDKFKVVRSPKSFNSQIGVALSLLEMHENASIAFIEAGISKPGEMKIL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +++P   + T    AH  NF+  EE    K  +F    +    F+ +           
Sbjct: 179 RDMIQPDFGIFTAFGKAHRENFADNEEHLLEKWTLF---RECKLAFIPH----------- 224

Query: 239 SHALGIKTIYSFGKSKNADFQLR---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                     +F     AD + R    ++ C            +S E  H  IGY     
Sbjct: 225 ----------TF-----ADLENRLPGNFQVC------------ESYENHHFPIGYSGMLG 257

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L T   ++ L  +    ++ ++       R + +         T+I+++YN +  ++  
Sbjct: 258 VLKTF--LAYLQFESHQILERINSLPTLALRMEVFE---GVNGNTIINDTYNLDFDALSE 312

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+    Q++P    +RI V+G    + E      +++ ++++ +N       
Sbjct: 313 ALIYQRQLAP--TKKRIVVIG----LSEKHAHERLEIEKLITSFNPDEFHFI 358


>gi|325518027|gb|EGC97835.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. TJI49]
          Length = 465

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 158/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIEGANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  + ++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAENVDARDGRMHFTVIRERRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D   +AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGHYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A I   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +A    DAL R++         +  ++D +   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRTAGKVDPVFVASVDEVPDALAKVAQNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
 gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
          Length = 471

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 158/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+  H +G     N+L+ L     L 
Sbjct: 241 -INPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLAELLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|310830391|ref|YP_003965492.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309249858|gb|ADO59424.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 459

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 147/435 (33%), Gaps = 45/435 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLG---------ALNKLAVAARLRS 106
                KGA + + +T    +   + +       D+V            L++  + ARL +
Sbjct: 43  EKLAAKGAKIYIGHTPEHIAGADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLN 102

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   IA+ G+ GKTTT  M+ + +           + +    +   +  +  +   G  E
Sbjct: 103 ERKGIAVAGAHGKTTTSSMIALVMERC--------NVDPTYIIGGEITNLGTNAKAGKSE 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P   ++T I   HL N+      + SA  +    ++  G   +
Sbjct: 155 FVVAEADESDGSFLQYHPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLGQIQPDGAAIV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD   + +  +        + ++G    AD+     +    +    +  +G ++  + 
Sbjct: 215 CADDQNIQEMLPQLQT----RVITYGIEHEADYMATDIQLGDRRLSFTMNRKGTALGTIE 270

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N + T+          +     +  FH   G  +R++   +     ++D+
Sbjct: 271 LSVPGKHNVYNAMATVISCLEAGIPFEQIAATIVEFH---GAKRRFQVIGDLHDVLVVDD 327

Query: 345 SYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            Y  +P  + A +               P    R   +L         S +  + + ++ 
Sbjct: 328 -YAHHPTEIIATLQAAKSTGKRIVAVFQPQRYTRTYFLLDQFSR--AFSDADEVIIPDIY 384

Query: 397 SLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           S        + G     L + +    + +  Y  + D +  ++  ++  GD+V+   +  
Sbjct: 385 SPAG--EKRIEGIDSQKLVELIKTNSNKNAKYLPSKDEISSYLLDAVKPGDIVITMGAGD 442

Query: 455 CGFYRLINLLLEEFP 469
              +++   L+    
Sbjct: 443 V--WKIATALVAALK 455


>gi|171316209|ref|ZP_02905432.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098623|gb|EDT43420.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 465

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 158/424 (37%), Gaps = 48/424 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GA  VVV+T + +    +       +P+     +L  L +L        
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++              IG  L  A     +  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAAGGLDP------TFVIGGRLISAGANARLGTGDFI 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   + P I VIT I   H+  +      +  A  E  + L   G+  +
Sbjct: 158 VAEADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD     +         K +  +G S +A  +         +    V  +G++ + VV
Sbjct: 216 CVDDPNVRQII----PFISKPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVV 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H  QN L  + I + L    D    AL+ F+    R +RY       G    + 
Sbjct: 272 LNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLI 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
           + Y  +P  M A +   +       GRR  VL         ++    D   VLS  +   
Sbjct: 332 DDYGHHPVEMAATV---AAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387

Query: 402 -SHVWLSGFHVLALK--DALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            + V+ +G   +A    DAL R++         +  ++DG+   +     +GDVV+   +
Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDGVPDALAGVARNGDVVITMGA 447

Query: 453 NSCG 456
            S G
Sbjct: 448 GSIG 451


>gi|121728371|ref|ZP_01681400.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|147675354|ref|YP_001217902.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O395]
 gi|172047586|sp|A5F5M8|MURC_VIBC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121629362|gb|EAX61793.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|146317237|gb|ABQ21776.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 486

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 94  QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 145 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 197 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 253 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 313 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 372 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIR 428

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 429 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 473


>gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
 gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 142/374 (37%), Gaps = 35/374 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+    IAI+G+ GKTTT  M+   L          G  +  + V   L  +  ++  G
Sbjct: 110 MRNYKQSIAISGTHGKTTTTSMVAEML--------LAGDMDPTVSVGGILKDIGGNIRVG 161

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +L ++   E         P + V+  I   HL  F  +E+I  +     + L + G +
Sbjct: 162 SPDLFVTEACEYTNSFLSFYPTLEVVLNIEADHLDFFKDLEDIRHSFRLFAQKLPQDGLL 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSME 282
            +N   S  E L+  +  L  + I +FG S ++ +  +        +   ++ +QGK + 
Sbjct: 222 VIN---SGIENLQQITDGLKCR-IVTFGSSPDSHYTAQNITYDEFARPSYDLIVQGKLVN 277

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V  G+ G H   N L  + +V  L    +  +  L  F    G  +R+      G  T+
Sbjct: 278 RVSLGVTGEHNVYNSLAAIAVVMELGVGFEAIMAGLKNFS---GTDRRFEKKGEIGGVTI 334

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ID+ Y  +P  +KA ++               PH   R  A L    E    +       
Sbjct: 335 IDD-YAHHPQEIKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLAAADE----- 388

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +  +Y        G     +   +      VH+  + D +  FI  + ++GD+++   
Sbjct: 389 VILADIYAARETDTLGVSSADIARKIQELGTPVHFIPSFDEIETFILENCMNGDLLITMG 448

Query: 452 SNSCGFYRLINLLL 465
           +      ++   LL
Sbjct: 449 AGDI--VKVGEKLL 460


>gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 495

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|88811837|ref|ZP_01127090.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
 gi|88790721|gb|EAR21835.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
          Length = 482

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 158/437 (36%), Gaps = 44/437 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +DG           +  V  +   V +     IPV    ++L  L +             
Sbjct: 72  HDGRRVARMDAVVTSSAVGPDNSEVVAARQHRIPVVPRAEMLAELMRFRYG--------- 122

Query: 111 IAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A+ G+ GKTTT  ++   L+      T+   G  N+      + AR+     + + E  
Sbjct: 123 VAVAGTHGKTTTTSLIASLLAEDGLDPTFVIGGRLNS----VASHARLGAGH-YLVAEAD 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P IAV+T I   HL         + ++  E    L   G   L  
Sbjct: 178 ESDASFL-----YLQPMIAVVTNIDADHLGAYQGDFARLRASFLEFLHHLPFYGLAVLCI 232

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           DD     L  ++     +   S+G S +AD +     Q   ++   V++  ++   V  +
Sbjct: 233 DDPEVRALLDRT----TRPARSYGYSADADVRATAVVQRGLRTSFAVRVGDEAPFSVDLN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  + +   L       ++ L+ F   + R +        G    + + Y
Sbjct: 289 LPGRHNALNALAAIAVALELGVSRAAIVRGLAEFAGIDRRFQPCGVLALGGGRVSLVDDY 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SH 403
             +P  + A   VL        GRRI V          ++    D A VLS  +    + 
Sbjct: 349 AHHPREIAA---VLRAAREGWPGRRIVVAFQ-PHRYSRTRDLFEDFARVLSAADALLLTE 404

Query: 404 VW--LSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           V+         A   +L R+I +       ++ +++ L   +   + D D+++   + S 
Sbjct: 405 VYAAGEAAIAGADGRSLCRAIRMRGQIDPVFALSVEELIELVPDVVRDDDLLITLGAGSI 464

Query: 456 GFYRLINLLLEEFPAIQ 472
           G      LLL  + A++
Sbjct: 465 G--NAAALLLGRYGAVE 479


>gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
 gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
          Length = 478

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 167/437 (38%), Gaps = 52/437 (11%)

Query: 43  FFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGA 94
           + A KG       FI HA +    A +VVV++ +  +        +L IPV     +L  
Sbjct: 58  YLAQKGAQI----FIGHAAENVEHADVVVVSSAIAENNVEVKQARALEIPVIRRAQMLAE 113

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +             IAI G+ GKTTT  +    LS               IG  LT A
Sbjct: 114 LMRFRFG---------IAIAGTHGKTTTTSLTASLLSDAGLDP------TFVIGGILTAA 158

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
                +  G + +  S   +  F   L++P I+++T I   HL N+    E + +     
Sbjct: 159 GSNARLGEGHYLVAESDESDCSFW--LLQPMISIVTNIDADHLENYNGSYETLKAGFVRF 216

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   L  DD+    +  +      + + ++G S++AD +    +Q       +
Sbjct: 217 LHNLPFYGLAVLCIDDAGVRSILPEV----GRPVRTYGFSEDADVRAINVRQKGLAMHFD 272

Query: 274 V--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           V    + +   V  +  G H   N L  + +   L  D +T I+ L+ F     R   + 
Sbjct: 273 VIAHDEDRCFSVTLNMAGKHNVLNALAAIIVGEELGIDRETIIEGLAQFKGVARRFTHHG 332

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +   F  + E Y  +P  +KA +     +      R +AV          ++    D
Sbjct: 333 RIAHDHGFADVFEDYGHHPREIKAVLDA--AMEGFAGRRIVAVF--QPHRFTRTRDLLDD 388

Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQ-S 439
            AEVL++ +   ++ V+ +G   +A  DA  L R+I  H      +    + +   ++  
Sbjct: 389 FAEVLAVCDCLVLTEVYAAGEEPIAGADARDLTRAIRAHGRVEPIFIADKEEIVPHLRHD 448

Query: 440 SLVDGDVVVVKSSNSCG 456
            L D DVV+   +   G
Sbjct: 449 ILQDDDVVIFFGAGDIG 465


>gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 511

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 176/477 (36%), Gaps = 71/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+  + G      P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELI--VAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAAN 73

Query: 63  KGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A +       +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTK 133

Query: 118 GKTTTKEMLTIALS-SIKKTYACIGSYNNHIGV------------PLTLARMPVDV---D 161
           GKTT+       ++ ++ K  A + S +  +               L L RM  +     
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S     +     +   I V   I+P H+S       E+  + K+EI +    
Sbjct: 194 MKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQG 278
              + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R      E  +  V    
Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR----LGEHGYFTVTTAN 305

Query: 279 KSM-----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++     +      G     N L  L + + +    +      +        G+     
Sbjct: 306 PALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSED---FRAGLAETTVPGRMEFIK 362

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             QG    +D  Y  N  S+ A+ + +       +GR I V+G     G  ++S   D+ 
Sbjct: 363 DKQGVVACVD--YAHNYLSLTASFNFMKH--EFKDGRLIVVIGA---AGGKAESRRKDIG 415

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVV 449
             LS Y      L+                 ++ E    +   I+ ++ + D+ V+V
Sbjct: 416 RALSQY-ADVAILTSED--------------NFFEDPHQIAADIKENIDNPDLEVIV 457


>gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 515

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 151/454 (33%), Gaps = 42/454 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFG 87
            +  D+RS+   + F A      D   F+  AV +GA  V+   +    +  + ++PV  
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPDAPAVPVAL 89

Query: 88  VDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
               L  L                  + +TG+ GKT+  + +  AL+++ +  A IG+  
Sbjct: 90  AVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGTLG 149

Query: 145 NHIGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAV 188
             +   L               +LA++       +  E+    L + R   +     +AV
Sbjct: 150 TGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--ANGTAFDVAV 207

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      +   +AKA++F          +N DD+    L  K         Y
Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266

Query: 249 SFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             G +   D          +  +  +   ++       V    +G     N+L  LG + 
Sbjct: 267 GIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGALL 326

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D A+  +       GR +R      Q    L+   Y   P +++  +  L  I+
Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 385

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
               GR + + G   +     +     +AE L+      V ++  +  +         + 
Sbjct: 386 AARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DEVVVTSDNPRSEDPQHIIDQVV 441

Query: 416 DALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
             +         E     +   ++ +  +  VV+
Sbjct: 442 AGMTAPDRARRIEDRASAILQAVRGAAREDVVVL 475


>gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
 gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
          Length = 495

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 169/482 (35%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----GPWVPGAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             VV   +  A+ G +     +PV  +  +   L+ LA     +   K T+I +TG+ GK
Sbjct: 61  AAVVAEAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----VDVDFGIFE--------- 166
           TTT ++L    + + +T A +G+  N +   L  A       VDV   + E         
Sbjct: 121 TTTTQLLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELAEKGATLT 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +    SAK  +F    + G   L
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFSE-HQVGQAIL 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       A+   L      +   +  +       +    +     + +       +
Sbjct: 240 NADDEVGRRWLAR---LPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFSSSWGN 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L+ L  +  L   + T I       P  G   R       G  T
Sbjct: 297 GEIDSPLMGAFNVSNLLLALATLLSLNYPLATLISVAPRLQPVNG---RMEVFSAAGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H +G+   + G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALEA---ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFA--- 406

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +  +         +   L                          D+V+V  
Sbjct: 407 -DVVVITDDNPRSEDPQAIVKDILTGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|312885129|ref|ZP_07744813.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367202|gb|EFP94770.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 489

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 144/435 (33%), Gaps = 44/435 (10%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVV--------NTDMVASIGSLSIPVFGVDDVLGALNKL 98
           KG       +I H+    +   VV        +   + +     IP+    ++L  L + 
Sbjct: 66  KGAKV----YIGHSADNISDASVVVISTAIDDHNPEIIAARQARIPIVRRAEMLAELMRF 121

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IAI G+ GKTTT  ++T   S            N  +      +    
Sbjct: 122 R---------HGIAIAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGASARLG 169

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGL 217
                I E   S    +      ++P ++++T I   H+       E++     +    L
Sbjct: 170 SSRILIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYAGDFEKLKQTFIDFLHNL 224

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     L  K      + + ++G S++AD ++  + Q   Q    V  +
Sbjct: 225 PFYGQAIVCIDDPIVRDLIPKIS----RQVITYGFSEHADVRIENYHQTGHQGQFTVVRE 280

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK + ++  +  G H A N    + + +      +  + A++       R +        
Sbjct: 281 GKPLLDITLNIPGRHNALNAAAAIAVATEDDIKDEAILSAMASTQGTGRRFEHLGEFDTD 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-----HID 391
               ++ + Y  +P  +   I       P      I          +L   F      +D
Sbjct: 341 KGQVMLVDDYGHHPTEVDVTIQAARNGWPQSRLVMIYQPHRFSRTRDLYDDFVNVLERVD 400

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVV 449
           +  +L +Y      +SG    AL   +     +   +      L   + + L DGD+V+ 
Sbjct: 401 VLIMLDVYAAGEAPISGADGRALCRTIRGRGKIDPIFVRETSELPAVLANVLQDGDLVLT 460

Query: 450 KSSNSCGFYRLINLL 464
           + +   G  ++   L
Sbjct: 461 QGAGDIG--KVAKRL 473


>gi|167036589|ref|YP_001664167.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115016|ref|YP_004185175.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855423|gb|ABY93831.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928107|gb|ADV78792.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 464

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 158/421 (37%), Gaps = 49/421 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP+     +LG + K             IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPIIDRATLLGLIMKKYKYG--------IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++++ L  +       +G   + IG          +V  G  E  ++   E  
Sbjct: 119 GKTTTTSLISVILDGMEFDPTVLVGGEVDVIGG---------NVRVGSSEYFVTEACEYT 169

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    + 
Sbjct: 170 DSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQ 294
              +    K I ++G  +++D++ +      +  +  +V  + + M        G H   
Sbjct: 230 NGLN----KNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVY 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +K
Sbjct: 286 NALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIK 341

Query: 355 AAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +                PH   R  ++L D    G    +  I +A++ +        
Sbjct: 342 ATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFA--GSFDNADKIIIADIYAAREKDTGI 399

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +S   ++ L     R   V Y +  D +  ++  +   GD+V+   + +   Y +  + L
Sbjct: 400 VSSKDLVEL--ISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNI--YEVGEMFL 455

Query: 466 E 466
           +
Sbjct: 456 K 456


>gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae]
          Length = 477

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 143/423 (33%), Gaps = 47/423 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +    + +IPV    D+LG L +             + I G+ GKT+T  M
Sbjct: 78  AAIPQDNPELQEARANNIPVIRRSDLLGELMEDHQQ---------VLIAGTHGKTSTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLV 182
             +AL +  K  +        IG  L  A        G   + E   S    +R+     
Sbjct: 129 AVVALQAAGKDPS------FAIGGQLNKAGTNAHDGTGKAFVAEADESDASLLRY----- 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IAV+T I P HL  F   E       +  E ++  GT+ +  DD     L  K    
Sbjct: 178 KPDIAVVTNIEPDHLDFFKTSEAYFKVFDDFAERVQPGGTLVVCLDDPHAAALGEKFKDR 237

Query: 243 GIKTIYSFGKSKNADFQ-------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              T+  +G    A          +   +     +   + +   +++V+    G+HM  N
Sbjct: 238 M--TVRGYGSPAAAQQYPDVAFTVVEHMEVGPAGTRARITVGDDTVDVIMRIPGHHMVLN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMK 354
               L       A+++     +S F     R + + R +        + + Y  +P  + 
Sbjct: 296 ACAALTAGVTAGAELERLAAGISDFSGVRRRFEFHGRVSGGAFHDAEVYDDYAHHPTEVT 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVW 405
           A +    Q        R+ V      +   +  F  + AE         +L ++      
Sbjct: 356 AVLKAARQQQEARGIGRVVVAFQ-PHLYSRTMEFAAEFAEALSLADHAVILDIFGAREQP 414

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINL 463
           + G     + D +  +I V +      +   ++      D++V   + S       ++  
Sbjct: 415 VEGVDSRIISDKM--TIPVVFEPNFSAVAAQVKKIAQPNDIIVTMGAGSVTLLADEILTA 472

Query: 464 LLE 466
           L E
Sbjct: 473 LRE 475


>gi|121587635|ref|ZP_01677399.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|153818410|ref|ZP_01971077.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|20532180|sp|Q9KPG8|MURC_VIBCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121548145|gb|EAX58218.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|126511043|gb|EAZ73637.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|327484896|gb|AEA79303.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 486

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 94  QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 145 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 197 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 253 YGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 313 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 372 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 428

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 429 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 473


>gi|262370857|ref|ZP_06064181.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
 gi|262314219|gb|EEY95262.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
          Length = 482

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 152/422 (36%), Gaps = 45/422 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSK 107
           +I H  +   GA ++VV+T + A    +        PV    ++LG L +          
Sbjct: 71  YIGHTAENIQGANVIVVSTAIDAENPEIKAAIETRTPVVRRAEMLGELMRYR-------- 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++T  L+          + +    +   L R  V+   G    
Sbjct: 123 -HGIAVAGTHGKTTTTSLVTCMLAE--------ENLDPTYVIGGLLNRTGVNAALGASRF 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       ++P   ++T I   H+  +    + +     +  + L   G   + 
Sbjct: 174 IVAEADESDASFLHLQPMATIVTNIDADHMDTYGGSFDVLKDTFVQFLQKLPFYGLAVVC 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285
            DD+    +  +      + + ++G +++ D +    +Q   QS   V  + +  + +  
Sbjct: 234 GDDANIREIMPRI----GRPLITYGFNEDNDIRAVDIEQEGMQSHFTVLRKDREPLRLTI 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  +GI +          +AL  F     R +        G    + + 
Sbjct: 290 NLPGLHNILNALAAIGIATDEGVSDAAIARALESFSGVGRRFQVQGEFDIDGGNVKLVDD 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLS 397
           Y  +P  ++A I       P    RR+ ++            F        H+D   +L 
Sbjct: 350 YGHHPKEVEATIKAARASHPD---RRLVMMFQPHRFSRTRDCFDDFVDVLSHVDQLLLLE 406

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNS 454
           +Y      + G    +L  ++     V     + ++G L   ++  L   D+++ + + +
Sbjct: 407 VYPAGEKPIVGADSRSLARSIRLRGDVEPILIDPVEGNLQHALKKVLQADDLLLTQGAGN 466

Query: 455 CG 456
            G
Sbjct: 467 VG 468


>gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens
           DSM 2638]
 gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM
           2638]
          Length = 470

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 155/432 (35%), Gaps = 47/432 (10%)

Query: 52  DGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
            G D +  A V   +  +  +   +     L IP+    ++L  L +L          T 
Sbjct: 57  HGADNVNDADVVVKSTAISDDNPELVKARELGIPIIPRAEMLAELMRLR---------TG 107

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  +L    +  +     I      IG  L        +  G F +  +
Sbjct: 108 IAVAGTHGKTTTTSLLATIFTEAELDPTVI------IGGRLNTFGSNARLGDGQFLIAEA 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +  FL   + P I V+T +   HL  + G E I  +  +    +   G   +  DD 
Sbjct: 162 DESDGSFLC--LAPIITVVTNVDKDHLDFYGGQEAIDESFRKFMNSIPFYGMNVVCGDDP 219

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + L         +   ++G +K    +      C  +S  +V L  K + EV     G
Sbjct: 220 GVQRLLPSIK----RPCMTYGLNKGNRLRGE-ILSCEVRSLFKVYLDEKLLGEVSLAQPG 274

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +G+      D    +  LS F    G G+R+          ++D+ Y  +
Sbjct: 275 KHNVLNALGAIGVSLEAGLDPKVILSGLSNFM---GVGRRFEKKGESKGILVVDD-YGHH 330

Query: 350 PASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           PA ++A I                 PH   R  A+ G+ C+  E +         +  +Y
Sbjct: 331 PAEIQATIETAKSCFPQRRLVVAFQPHRFTRTEALFGEFCKTFEKADEL-----LLTEIY 385

Query: 400 NISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             S   + G + ++L   + +     V +    + +   + + L  GD+ + + + S   
Sbjct: 386 PASEDPIPGVNGMSLAQGIRQVSDTKVRFYPDFEMMQNELPNILKPGDLFITQGAGSI-- 443

Query: 458 YRLINLLLEEFP 469
           Y +    L+   
Sbjct: 444 YTVGEKFLKYLE 455


>gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 495

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 165/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK       ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPDAVAVSMEDH-INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V     +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFSCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
 gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
          Length = 471

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 165/460 (35%), Gaps = 57/460 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + ++   L+ L      +  +  +++ +TG+ GKTTT ++L     ++ +T A +G+  
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGAALSLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               L R  VD       + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +      +N DD+      ++     +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQAEHK-IINADDAVGRRWLSQ-----LPQAVAV 235

Query: 251 GKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               N            R+       + +         ++    +G     N+L+ L  +
Sbjct: 236 SMEGNIPTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +   + A     P  GR + +    N      +   Y   P +++ A   L+  
Sbjct: 296 LALGYPLTQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---LAAA 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS----------HVWLSGFHVLA 413
             H +G+   V G   +  +  +S    +AE L+   +              ++      
Sbjct: 349 RLHCKGQLWCVFGCGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL 408

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L     ++IH       + +   I  +  + DVV++  K 
Sbjct: 409 LDAGRAQAIHGR----AEAVTSAIMQA-KEDDVVLIAGKG 443


>gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 495

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 168/482 (34%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       A   +L      S     N++      +    +     + +        
Sbjct: 240 NADDEVGRRWLA---SLPDAVAVSMEGHINSNCHGRWLKAEAVEYHDRGATIRFASSWGE 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 297 GEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGGIAEEFA--- 406

Query: 401 ISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV-- 449
              V ++  +         + D L   +       M+G    + +++    D DVV++  
Sbjct: 407 -DIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|210616990|ref|ZP_03291325.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
 gi|210149513|gb|EEA80522.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
          Length = 458

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 161/413 (38%), Gaps = 43/413 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +  A     ++P+    ++LG L        + +  T IA++G+ GKTTT  M
Sbjct: 77  AAIHEDNEEFAEAKRQNLPMLSRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L          G  +  I V   L  +  ++  G  ++ ++   E         P 
Sbjct: 129 LSHVL--------LAGEKDPTISVGGILKAIGGNIRVGSSDVFVTEACEYTNSFLHFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  +   H+  F  I++I ++  +    L   G + +N      E + + +  L  K
Sbjct: 181 IGIILNVEEDHMDFFKDIDDIRNSFHQFAALLPADGALVIN---QNIEGINSITDGLDCK 237

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            I ++ + + AD+   + +      +  ++   G+ ++ +   + G H   N L  + + 
Sbjct: 238 -IITYSERQPADYSASEIRFDEIGNASFDLLRHGEYVDRITLAVAGNHNVSNALAVIAVC 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L   +D   K +  F    G  +R++    +   T+ID+ Y  +P  ++A ++     
Sbjct: 297 EQLEIPLDIIKKGILSFT---GTDRRFQYKGERDGVTIIDD-YAHHPTEIRATLTSAQNY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  E   LS + H+ LA++ +      +   G    AL
Sbjct: 353 PHKDIWCIFQPHTYTRTKAFFDEFAE--ALSLADHVVLADIYAARETDTL---GMSSAAL 407

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +       +Y  + + +  F+    + GD+++   +       +   LL+
Sbjct: 408 TEKIKELGTDAYYFPSFEEIENFVSEKCIHGDLLITMGAGDV--VNIGEALLK 458


>gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 495

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 173/484 (35%), Gaps = 59/484 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL  +        P   +  +++DSR  +  + F AIKG   DG  +I  A+ +G 
Sbjct: 5   NLRDLLAPLG----IDAPVRELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+         G++ I    PV  V+D+   L++L          K  +I +TG+ GK
Sbjct: 61  AAVIAEAQGEVDNGTVQIMHGVPVVYVNDLNNKLSQLAGEFYCHPGDKLHLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFG 163
           TTT ++L      + +T A +G+  N                + + L L ++   +  F 
Sbjct: 121 TTTTQLLAQWSHGLGETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTG 221
             E+    L + R     +    AV T ++  HL     +E   +AK  +F    +++  
Sbjct: 181 AMEVSSHGLVQGR--VAALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQ- 237

Query: 222 TIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279
              +N DD       ++   A+ +       ++        R+ K   +   +  +    
Sbjct: 238 --IINADDEIGLKWLSRLPQAVAVTMENRLPENWQGRWLAAREIKYHDKGVSITFESSWG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +    +G     N+L+ L  +  L   ++  ++  S   P  GR + +         
Sbjct: 296 GGTIDSSLMGAFNVSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTP----GK 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++   Y   P +++ A   L     H +G+   V G   +  +  +     +AE L+ Y
Sbjct: 352 PVVVVDYAHTPDALEKA---LMAARLHCQGKLWCVFGCGGDRDKGKRPLMGGVAEQLADY 408

Query: 400 NIS----------HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            I              ++      L      +IH       + +           DVV++
Sbjct: 409 VIVTDDNPRNEEPQAIIADILTGFLDPGRAIAIHGRVEAVTNAIMQA-----KADDVVLI 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|83816151|ref|YP_444704.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
 gi|109892736|sp|Q2S527|MURC_SALRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83757545|gb|ABC45658.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
          Length = 475

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 134/371 (36%), Gaps = 34/371 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M  + ++        I               +  + D  + E    
Sbjct: 117 VGVAGTHGKTTTTSMAGLVVAEGGFDPTVIVGGKVTAFGS---NAITGEGDVLVIEA--- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P +AVIT+I   HL  +  +  I ++  +    +   G   L  DD 
Sbjct: 171 --DEYDRTFLRLTPSLAVITSIEEDHLDVYEDLAAIQASFTQYANSVPFFGAAILCLDDP 228

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + +         + + ++G ++ A+ +    ++    +  +V ++G+ +  +  H  G
Sbjct: 229 NVQAIVGDVE----RRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGERLGTIELHVPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N L  + +   L    +     L  F    G  +R+      G  T++D+ Y  +
Sbjct: 285 MHNVRNALAAVAVGQELEISFERVRDGLGTFT---GVRRRFEKKGEVGGITVLDD-YAHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYN 400
           P  ++A +    Q     + R +AV      M   +Q+F  + A          +  +Y 
Sbjct: 341 PTEIEATLDAAHQ--GFPDRRVVAVF--QPHMYSRTQNFMDEFACSFFNADMLVLTDVYG 396

Query: 401 ISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--G 456
                + G     L +   +  H  VHY      L   +Q  +  GDVV++  +      
Sbjct: 397 AREAPIEGVTGGRLAERAEQFGHRAVHYVPEKTDLPGRLQELVGPGDVVLMLGAGDIWRA 456

Query: 457 FYRLINLLLEE 467
               + LL  +
Sbjct: 457 SEAFVELLEND 467


>gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
 gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
          Length = 512

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 159/475 (33%), Gaps = 48/475 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P      +  D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+   + + A+            D L                  I +TG+ GKT+  
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCT 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FEL 167
           + +  AL+++ +  A IG+  + +   L               +LA++       +  E+
Sbjct: 126 QWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEV 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R   +     IAV T +   HL      +   +AKA++F          +N 
Sbjct: 186 SSHALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVVNR 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           DD+    L  K         Y  G ++  D          +  +  +   +       +V
Sbjct: 243 DDAAGRRLLEKLAGRVRTIAYGIGDAQTPDADRELVALDVRATATGTAFRLSSSWGDADV 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  LG +       D A+  ++      GR +R      Q    L+ 
Sbjct: 303 EVGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRL-GGRLQNDEPLVV 361

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++  +  L  I+    GR + + G   +     +     +AE L+      
Sbjct: 362 IDYAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DE 417

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           V ++  +  +         +   +    H    E     +   ++ +  +  VV+
Sbjct: 418 VVVTSDNPRSEDPQRIIDQVIAGMTAPDHARRIEDRASAILQAVRGAAREDVVVL 472


>gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 537

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 90/496 (18%), Positives = 175/496 (35%), Gaps = 60/496 (12%)

Query: 2   NPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            P+ T    L A+ G  +    G      V G+ + ++ I   + F A+ G    G +F 
Sbjct: 24  QPVRTTVSALAALAGARVEAPTGTAEHVIVTGVDLRAQGIVEGDLFAALPGARAHGAEFA 83

Query: 58  LHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAV--AARLRSKATIIAI 113
             A+ +GA  ++ +    A + +L   +PV   DD  G L +L+     R   K  +I I
Sbjct: 84  ADALARGATAILTDEAGFALVSALGSDMPVLVHDDPRGVLGELSATIYGRPSEKMQVIGI 143

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--------------- 158
           TG+ GKTTT  ++  AL++  +T   +G+    +      + +                 
Sbjct: 144 TGTSGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGRRVPSALTTPEAPQLHALFAVMLE 203

Query: 159 -DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +D  + E+    L   R     VR  +   T ++  HL      E+  +AKA +F   
Sbjct: 204 QGIDTVVMEVSSHALSLGR--VDGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAAD 261

Query: 218 E--KTGTIFLNYDDSFFELLKAKSHALG--IKTIYSFGKSKNADFQL--RKWKQCSEQSW 271
                    +  DD + + +   +      + T+ +   S+ A +            Q++
Sbjct: 262 SSVHAQHAVICIDDVWGQRMADVARGAHSIVTTVATTPDSEGAVWTAGPATVSPSGSQTF 321

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +G +++V     G +   N  + + + + L  D   A++ ++     +  G+  R
Sbjct: 322 ALTTAEGTTLDVELRLPGQYNVANASLAVALCAALGVDPRDAVEGIA---GVDVPGRVQR 378

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               Q F  ++D  Y   PA+++A I+ L +         +   GD         +    
Sbjct: 379 IDRGQDFLAVVD--YAHKPAAVEAVIATLREQVRGRVAVVVGAGGD-------RDAGKRP 429

Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFI 437
           L    +      + ++           ++ A+              V             
Sbjct: 430 LMGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVPESERGQVWEVADRAKAIADA 489

Query: 438 QSSLVDGDVVVV--KS 451
                 GDVV+V  K 
Sbjct: 490 VGWAQAGDVVLVAGKG 505


>gi|325294545|ref|YP_004281059.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064993|gb|ADY73000.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 458

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 142/419 (33%), Gaps = 37/419 (8%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F   K  +  G + ++H     +  V  +   +    +L IPV    D+L  + +    
Sbjct: 52  VFIGHKAENVHGANLVIH-----SSAVKFDNVELQEAKNLGIPVIPRADILSDIMRFKEG 106

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    +A+ G+ GKTTT  M+                    + +   +     D +
Sbjct: 107 ---------VAVAGTHGKTTTSSMIATIFHIAG--LKPTILVGGRLSILGGVNAQSGDGN 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++       P  +VIT I   H+  +   E +  A  +    +   G
Sbjct: 156 WLVAEADESDGTFLKLT-----PTFSVITNIDADHVDYYGSFENLKEAFLDFANRVSFYG 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +FL  +    + +    +    K    +G S+  D   ++       +  +V  + K +
Sbjct: 211 KVFLCGECQNVKEIVGSIY----KRKLIYGFSEKFDLYAKEIVPVGLGTIFDVYYKSKKL 266

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V  +  G H   N L  +G+   +    +   ++L +F       +R          T
Sbjct: 267 GRVKLNVPGKHNILNALGAIGVSLEVGVSFNQIAESLEMFRNAN---RRMELKGTVNGIT 323

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSL 398
            ID+ Y  +P  ++ +   L         RRI VL         +      + + + +  
Sbjct: 324 FIDD-YAHHPTEIETSYKALKS---SFPDRRIVVLFQPHRFSRTNLLWKEFVKVLKEIDN 379

Query: 399 YNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             IS ++ +G   +   +A  L R     Y  ++      I+  L  GDV +   +   
Sbjct: 380 LFISDIYPAGEKPIKGINAKNLARECGAVYCGSLKKACRTIKLELKPGDVFLSMGAGDV 438


>gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 511

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 177/479 (36%), Gaps = 75/479 (15%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+  + G      P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELI--VAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAAN 73

Query: 63  KGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A +       +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTK 133

Query: 118 GKTTTKEMLTIALS-SIKKTYACIGSYNNHIGV------------PLTLARMPVDV---- 160
           GKTT+       ++ ++ K  A + S +  +               L L RM  +     
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 161 -DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGL 217
             + + E+        +     +   I V   I+P H+S       E+  + K+EI +  
Sbjct: 194 MKYLVMEVSSQAYK--KSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNC 251

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQL 276
                + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R      E  +  V  
Sbjct: 252 R---ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR----LGEHGYFTVTT 303

Query: 277 QGKSM-----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              ++     +      G     N L  L + + +    +      +        G+   
Sbjct: 304 ANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSED---FRAGLAETTVPGRMEF 360

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               QG    +D  Y  N  S+ A+ + +       +GR I V+G     G  ++S   D
Sbjct: 361 IKDKQGVVACVD--YAHNYLSLTASFNFMKH--EFKDGRLIVVIGA---AGGKAESRRKD 413

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVV 449
           +   LS Y      L+                 ++ E    +   I+ ++ + D+ V+V
Sbjct: 414 IGRALSQY-ADVAILTSED--------------NFFEDPHQIAADIKENIDNPDLEVIV 457


>gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM
           17629]
          Length = 459

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 152/414 (36%), Gaps = 43/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+  +  IP+    ++LG +               IA+ G+ GKTTT  M
Sbjct: 77  AAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDY--------SIAVAGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L             +  I V   L+ +  ++  G  E  +S   E        RP 
Sbjct: 129 ISEIL--------LAAQTDPTISVGGILSSIHGNLRVGDSEYFISEACEYTNSFLNFRPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++I  I   HL  F  I +I  +  E        G   +N +   +E + A       +
Sbjct: 181 YSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEIDSYEEIVAGLP----Q 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
            I ++G     DF         +  +      QG    +V     G H   N L  + + 
Sbjct: 237 KIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIALS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           + L  D ++ +  L  F    G  +R++        T+ID+ Y  +P  ++A ++   + 
Sbjct: 297 TTLGLDEESILTGLDKFG---GADRRFQYKGKVNGVTIIDD-YAHHPTEIRATLTAAQKY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L D  ++  ++     D+  +  +Y        G     +
Sbjct: 353 PHDRLVLCFQPHTYSRTKAFLNDFADVLSMA-----DVVVLADIYAAREQNTYGISSKDI 407

Query: 415 KD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            D  L + ++ HY  + + +  F+  + V+GD+++   + +     +   LL++
Sbjct: 408 LDLLLEKGVNAHYFPSFEEIEKFLSENCVNGDLLITMGAGNV--VEIGEDLLKK 459


>gi|317121120|ref|YP_004101123.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591100|gb|ADU50396.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
          Length = 479

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 164/456 (35%), Gaps = 47/456 (10%)

Query: 47  KGPHYDGHDFILH-----AVQKGAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGALN 96
           +G    G D           ++GA + + +     +   L      +P   V+ V     
Sbjct: 37  RGARVSGSDVRPSDRTRWLAEQGAAVHIGHAARHVAGADLVVYNTDVPADNVELVAAREA 96

Query: 97  KLAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            + V  R +      +    +A+TG+ GKTTT  M  + L +       +          
Sbjct: 97  GIPVWHRSQVLADLLNHRRSVAVTGTHGKTTTTAMTGLVLVAGGLDPTVLVGGEVPEFGA 156

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
            T AR+     + + E   S    +R+L     P IAV+T + P HL ++     ++  A
Sbjct: 157 AT-ARLGEG-PWVVAEACESDGTFLRYL-----PEIAVVTNVEPEHLDHYGGDFAQLLQA 209

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSE 268
            A     +   G +    D      L A         +  +G +++++D + R  +   E
Sbjct: 210 FARFLRNVRPGGLVVACGDHPVLRQLLADRTPAPGVRVVRYGMEAEDSDLRARDVQAGPE 269

Query: 269 QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +   V   G+ + EV     G H   N L  + +   L      A  AL+ FH   G  
Sbjct: 270 GTRFTVWQGGRPLGEVRLAVPGLHNVLNALAAVAVGLELRVPFAAAAAALASFH---GAK 326

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R++   N+    ++D+ Y  +P  ++A +    Q      GR IAV     +    ++ 
Sbjct: 327 RRFQVIYNRDGILVVDD-YAHHPTEIRATLRAARQRQGE-GGRVIAVF--QPQRYSRTRL 382

Query: 388 FHIDLAEVLSLYN---ISHVW-------LSGFHVLALKDALPR--SIHVHYSETMDGLFL 435
              + A      +   ++ ++       + G     L D + R     V    + + L  
Sbjct: 383 LMDEFARAFGDADRVILTEIYAPPGERPIPGVSSAVLADRIAREEGRPVELIASREELVE 442

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            +  ++  GD+V+   +     + +   L     A+
Sbjct: 443 HLLRTVRPGDLVLTMGAGDI--WTVARDLARRLQAV 476


>gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895]
          Length = 495

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 171/480 (35%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEHMRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-------DVDFGIFE------ 166
           TTT ++L      + +T A +G+  N +   +               V  G+ E      
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVEQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYS-THHYGEAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD        +       ++     + N      +  + K     + +         E
Sbjct: 240 NADDEVGRRWLVRLPDAVAVSMEDH-INPNCHGRWLKAVEVKYHDSGATIRFDSSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K      P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLADLLKTAPRLQPVCG---RMEVFSAPGKTTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCTGQLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 408 VVVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKG 467


>gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 495

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 165/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVDYHDRGATIRFASSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 490

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 155/479 (32%), Gaps = 50/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +       +  +  DSR     + F  + G   DGH +I     KG
Sbjct: 1   MKLSKLLEKLEYEVLNGNVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYISDVAGKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +VV  D+  +     I +    D   AL  ++ A        +  I  +  K  T  
Sbjct: 61  VLAIVVQKDIEVTEELKDITLIKTADTRYALALMSAAFFDYPAKKLKTIGITGTKGKTTT 120

Query: 125 --MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------MPVDVDFGIFELG 168
             M+   L         IG+    IG     ++                V+       + 
Sbjct: 121 TFMIRDILEKCNIKAGLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQMVEAGCSCVVME 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +   T  +   I V T I P H+     +  EE    K+ +F+          N
Sbjct: 181 VSSQALMLNRTAGILFDIGVFTNIEPDHIGPNEHASFEEYMECKSRLFKQCVHG---IGN 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEV 283
            D  +F+ +          T+ ++G    AD +    +   E   +         + + +
Sbjct: 238 ADSEYFDKIMEGHTC----TLETYGIKNKADLKAENIRYIHEGGNITTSYNTTGTRELNI 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +      D    + A    +     G+     ++  F  +ID
Sbjct: 294 KLTLPGEFSVYNSLCAIAVSEHFNVDDKLLLDA---LYNTRVAGRVEPVKVSDDFIVMID 350

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--------EMGELSQSFHIDLAEV 395
             Y  N  S+++ +S L + +P+   R + + G           EMGE+S     DL  +
Sbjct: 351 --YAHNAMSLESLLSTLREYNPN---RIVCLFGCGGNRSKLRRFEMGEVSGRM-ADLTII 404

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
            S        +    +  ++  + ++   +   E       +       GD++V+  K 
Sbjct: 405 TSDNPRDEDPV--LIMQDIETGIKKTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKG 461


>gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UM146]
 gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 110-3]
          Length = 471

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 158/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 YAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
 gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
          Length = 468

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 156/416 (37%), Gaps = 53/416 (12%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA ++VV+T +      L       IPV    ++L  L +L            IAI G+ 
Sbjct: 66  GADVLVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC---------IAIAGTH 116

Query: 118 GKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  M+   L   ++  T    G  N +     T AR+    D+ + E   S    +
Sbjct: 117 GKTTTTSMVATLLDAGALDPTVINGGIINAY----GTNARLGAG-DWMVVEADESDGTFL 171

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     +   +A++T + P HL +F   E +  A     EG+   G   +  D +  + L
Sbjct: 172 K-----LPVDVAIVTNVDPEHLDHFKTFEAVQEAFRHFVEGVPFYGFAVMCIDHAVVQAL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGI 288
             K      + I ++G++  AD +L   +  +  S  +V+++ +         ++V    
Sbjct: 227 VGKIE---DRRIITYGENPQADARLVDLQPFTGGSKFKVEIRHRKAGAAHVISDLVLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    + +   +    +   KAL+ F   +   +R+         T+ID+ Y  
Sbjct: 284 GRHNALNATAAIAVAYEVGMSDEAIRKALAGFGGVK---RRFTRTGEWNGVTVIDD-YGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNI 401
           +P  + A   VL       +GR IAV+       +  L + F       D   V  +Y  
Sbjct: 340 HPVEIAA---VLKAARDSTKGRVIAVVQPHRYTRLQSLFEEFCTCFNDADTVVVADVYPA 396

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               + G    +    L    H      E    L   ++     GD VV   + S 
Sbjct: 397 GEAPIPGIDRDSFVLGLRAHGHREVIPLEGASQLASIVRRIAQPGDFVVCLGAGSI 452


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae
           SmR1]
 gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 145/417 (34%), Gaps = 50/417 (11%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  +V +T +      +       IP+     +LG L +L            IAI G+ 
Sbjct: 64  GADAIVTSTAVKGDNPEVLAARKKHIPIVPRAVMLGELMRLKKG---------IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+               IG  LT A     +  G F +  +   +  F
Sbjct: 115 GKTTTTSLVASVLAQGGLDP------TFVIGGRLTSAGANAKLGTGEFIVAEADESDASF 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   + P I VIT I   H+  +      +  A  E  + L   G   L  DD     + 
Sbjct: 169 LN--LTPVIEVITNIDADHMETYNHDFARLKQAFVEFTQRLPFYGVAVLCLDDPHVREIM 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQN 295
                   K I ++G  ++AD +    K    +    V   G   M+V  +  G H  QN
Sbjct: 227 PMVS----KPILTYGFHEDADVRAIDAKAVDGKMEFTVIQDGYAPMQVSLNQPGMHNVQN 282

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNAN 349
               + I   L  D     KAL+ F+    R  R      +           + + Y  +
Sbjct: 283 ACAAIAIARELDVDDAATQKALTEFNGVGRRFTRYGEVPLWDAEGKPAGHFTLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYN 400
           P    A I   +       GRR  VL         ++    D  +VLS         +Y+
Sbjct: 343 PVETAATI---AAARGAYPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSSPDVLVLAEVYS 398

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                +      +L  AL  +  V   + + +  +   I++ + DGDVV+   + S 
Sbjct: 399 AGEAPIVAADGRSLAHALRAAGKVEPVFVDDIGDMPETIRNVVRDGDVVMTMGAGSI 455


>gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
 gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
          Length = 515

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 145/458 (31%), Gaps = 50/458 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              +  V G++  S+ + P + + A+ G    G +F+  A + GA  V+ +    ++   
Sbjct: 36  GPSEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVPAAARAGAVAVLTDPAGASATAQ 95

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +P+  V D    L  LA        +   +I +TG+ GKT+T  ++   L +      
Sbjct: 96  AGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIGVTGTAGKTSTAYLVESGLRAAGHVTG 155

Query: 139 CIGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            IG+    +G                  +  A     V   + E+    L   R     V
Sbjct: 156 LIGTVETRLGDLAMDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGR--VGGV 213

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R  +   T     HL       +  +AKA++F+G  +     LN+DD     L  ++   
Sbjct: 214 RFTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDG--RCEVEVLNHDDPALRPLYRQAT-- 269

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLG 301
                YS    ++A +               +    G ++       G H   N L+ + 
Sbjct: 270 ---VTYSAAGDRSATWWADAVGGEGYAQRFTLHGPDGLALPAGVALPGRHNVANALLAIA 326

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++     D  TA   ++      GR +  R              Y     ++ AA++ L 
Sbjct: 327 VLVAAGVDAKTAAAGVAACGGVPGRLELVRAPGPVRGVV----DYAHKTDAIVAALAALR 382

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----------V 411
           +       R I +LG   +     +        + +      V ++  +           
Sbjct: 383 EFGA--GRRLICLLGAGGDRDRGKRPLMG----IAAAEGADVVVVTDDNPRTEEPAEIRA 436

Query: 412 LALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVV 447
             L  A          E                 GDVV
Sbjct: 437 EVLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVV 474


>gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 467

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 148/430 (34%), Gaps = 52/430 (12%)

Query: 44  FAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
              K  + +G D   +  A+++       +   + +  +  IPV    ++L  L +L   
Sbjct: 57  VGHKTENVNGADVLVVSTAIKR-------DNPELMAARAQRIPVVRRAEMLAELMRLKSC 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    +AI G+ GKTTT  M+   L +       I      I    T AR+    D
Sbjct: 110 ---------VAIAGTHGKTTTTSMVATLLDAGDFDPTVIN--GGIINAYGTNARLGAG-D 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   IA++T +   HL +F   + +  A     E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPTDIAIVTNVDAEHLDHFKTFDAVQDAFRSFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + +  +      + I ++G++  AD +L         S  +V  + +  
Sbjct: 213 FAVMCIDHPVVQTMVGRIE---DRRIITYGQNPQADVRLVDLAPNGGGSHFKVVFRNRKT 269

Query: 282 EVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  H          G H A N    + +   L     T   AL+ F   +   +R+    
Sbjct: 270 DAAHEIPDLVLPMPGPHNALNATAAIAVAHELGIPDATIRNALAAFGGVK---RRFTKTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF---- 388
                T+ID+ Y  +P  + A +    +      GR +AV+       +  L + F    
Sbjct: 327 EWKGVTIIDD-YGHHPVEIAAVLKAARE---STAGRVVAVVQPHRYTRLQALFEEFCTCF 382

Query: 389 -HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGD 445
              D+  V  +Y      ++G         L    H       +   L   I S    GD
Sbjct: 383 NDADIVVVAEVYPAGETPIAGIDRDHFVLGLRAHGHREVVSLQESAALAGVIASLAKPGD 442

Query: 446 VVVVKSSNSC 455
            VV   + + 
Sbjct: 443 YVVCLGAGNI 452


>gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
 gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
          Length = 488

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 155/460 (33%), Gaps = 44/460 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IG 79
           +  +N + +DSR++   + F  + G   DG  F   AV  GA +V++ ++          
Sbjct: 14  EQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQDQARIEW 73

Query: 80  SLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             +IP   V  +   L+ L  A       K T++ +TG+ GKTT   +LT     + K  
Sbjct: 74  HDNIPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWTHLLGKKS 133

Query: 138 ACIGSYNNHIGVPLTLARMPVD--------------VDFGIFELGMSHLGEIRFLTHLVR 183
           A +G+  N     +  A                          + +S  G ++     ++
Sbjct: 134 AVMGTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQHRVDALQ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHAL 242
              AV T ++  HL     ++  A AK  +F G        +N DD    + L+    A+
Sbjct: 194 FAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNR-IINADDEVGKQWLQQMDDAI 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +     F        +        +   + V             IG     N+L+    
Sbjct: 253 EVSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEFNVCNLLLATAT 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L   +     +++      G   R  C   +G  T I + Y   P ++  A   L  
Sbjct: 313 LLSLGYSLSCLSDSVNQLQGVCG---RMECFTAEGRPTAIVD-YAHTPDALDKA---LRA 365

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPR 420
              H +G+   V G   +  +  +     +AE L+     H+ ++  +         +  
Sbjct: 366 ARLHCDGQLWCVFGCGGDRDKGKRPQMAKIAEQLA----DHIVITDDNPRTEDAAAIIND 421

Query: 421 SIHVHYSETMDGLFLFIQSSL-------VDGDVVVV--KS 451
            +          +    + +L          DV++V  K 
Sbjct: 422 IVQGLDFPNNATIIHQRKQALVYAFACANANDVILVAGKG 461


>gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8]
          Length = 479

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 96/406 (23%), Positives = 154/406 (37%), Gaps = 48/406 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  +  IPV     +L  L +             IA+ G+ GKTTT  ++   L  
Sbjct: 79  PEVKAARAKKIPVVPRALMLAELMRFKQG---------IAVAGTHGKTTTTSLIASILGE 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                         IG  L  A     +  G + +  +   +  FL   + P +AV+T I
Sbjct: 130 AG------MDPTFVIGGKLEAANANAKLGTGDYIVAEADESDASFL--HLTPVMAVVTNI 181

Query: 193 APAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E++ SA  E  + L   G   +  DD+    +  +      K + ++G
Sbjct: 182 DQDHMDTYEHSFEKLKSAFVEFLQQLPFWGMAVVCVDDANIREILPRV----TKPVMTYG 237

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            S++A  + +  +    +    VQ         +V  +  G H   N L  + I S L  
Sbjct: 238 LSEDARIRAKNVRADDGKMHFTVQRINGVTTEFDVTLNLPGNHYVLNALAAIAIASELNV 297

Query: 309 DVDTAIKALSVFHPKEGRGKRY-------RCALNQGFFTLIDESYNANPASMKAAISVLS 361
                IKAL  F     R +RY       R A + G FTLID+ Y  +P  M+A I+   
Sbjct: 298 PDAAIIKALKEFKGVGRRFERYGEVPAMPRNAASAGTFTLIDD-YGHHPVEMQAVIAAAR 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD-- 416
              P+    R  V+         ++    D   VLS  ++   + V+ +G   +   D  
Sbjct: 357 GAFPN----RRLVMAFQPHRYTRTRDCFEDFVRVLSSADVVLLTEVYSAGEASIVAADTR 412

Query: 417 ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +L R+I V       + ET D L   I       DVV+V  + S G
Sbjct: 413 SLIRAIRVAGKVEPLFVETTDELPQAILDIAHADDVVIVMGAGSIG 458


>gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
 gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
          Length = 516

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 157/474 (33%), Gaps = 48/474 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A+ G   G  P G V G  ID+R +   E F A+ G H  G  F   A+ +GA  V+
Sbjct: 25  IADAVGGTRHG--PVGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVL 82

Query: 70  VNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +   +  + +  +PV  V DV                +   +  +TG+ GKTTT  +L 
Sbjct: 83  TDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTTTTYLLR 142

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSH 171
             L  + K  A +G+    IG     + +                   ++  + E+    
Sbjct: 143 HLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHA 202

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           LG  R     +R  +A    +   HL     +E+    KA +F        + +  DD +
Sbjct: 203 LGLGR--VDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTERRSDRQVII-VDDDW 259

Query: 232 FELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIG 289
              L  +   +G     +   +   AD+Q       S  S ++++   GK+  V     G
Sbjct: 260 GRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPG 319

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESY 346
              A N  + + ++ +    V   +    +         R               +   +
Sbjct: 320 RFNAVNTALAI-VMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPRVIVDF 378

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP ++K+ +  L    P   GR   V G     G+        L  +         +L
Sbjct: 379 AHNPGALKSLLETLR---PSTAGRLRLVFGG---TGQRDLEKRPILGRIAGEL-ADFTYL 431

Query: 407 SGFH--------VLALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVV 449
           +           + A   A        Y E       +   IQ +    D VV+
Sbjct: 432 TDDDPHEEDPDKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQEA-KPQDTVVI 484


>gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
 gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
          Length = 495

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/456 (17%), Positives = 156/456 (34%), Gaps = 49/456 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+KG   DG  +I  A+ +G   ++      A  G +     +PV 
Sbjct: 26  TLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAIIAEAQGEAEEGEIRVVHGVPVI 85

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            + D+   L+ L      +  SK  ++ +TG+ GKTTT +++      + +T A +G+  
Sbjct: 86  YLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTVG 145

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   ++ +         I                + +S  G I+     +    AV T
Sbjct: 146 NGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLIQGRVAALNFDAAVFT 205

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKT 246
            ++  HL     +E   +AK  +F    +T T  +N DD     +   L           
Sbjct: 206 NLSRDHLDYHGDMENYEAAKWLLFS-THQTKTQIINADDDVGLKWLHRLPQACAVTMENR 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I    +      +        + + +               +G     N+L+ +  + ++
Sbjct: 265 IPKNWQGSW--LKATNVDYHDKGATIHFASSWGEGSFESPLMGAFNVSNLLLAMATLLMM 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D  + A     P  G   R      +G  T++ + Y   P +++ A   L     H
Sbjct: 323 DYPLDKLLAATDFLMPVCG---RMEVFSTEGKPTVVVD-YAHTPDALEKA---LLAARLH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            +G+   V G     G+  +     +      Y    V ++  +  +         +   
Sbjct: 376 CKGKLWCVFGC---GGDRDKGKRPLMGASAEQY-ADKVVITDDNPRSEEPLDIINDIMAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S  V                    DV++V  K 
Sbjct: 432 ILDSSRVLAIPGRPEAVTSTILQAQPDDVILVAGKG 467


>gi|51894054|ref|YP_076745.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
 gi|59798212|sp|Q67K97|MURC_SYMTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51857743|dbj|BAD41901.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 482

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 144/432 (33%), Gaps = 43/432 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            HD    A  +GA +VV +T +      L+         L  L++  + A        IA
Sbjct: 56  AHD---AAHIEGADVVVYSTQVPEDNPELAA---ARARGLRVLHRSELLAEF-LNGRSIA 108

Query: 113 ITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           + G+ GKTTT  M+   L          +G     IG      R     D+ + E   S 
Sbjct: 109 VAGTHGKTTTSSMVACLLEKAGLDPTILLGGDLEVIGGTGKAGRG----DWVVAEADESD 164

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +R+      P +AV+T + P HL  +      I     +    ++  G   L  DD 
Sbjct: 165 RSFLRY-----HPRVAVVTNVEPEHLEFWEGSFARIQEGFRQFLRQVQPGGLAALCADDP 219

Query: 231 FFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               + +   +  G+  +  +G    A+++    +   +    +    G+ + EV     
Sbjct: 220 TLRSIGQELRNQPGVVHVVFYGTHPEAEWRAENIRPWEKGIVYDCVRDGRLLGEVRLPIP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N L  L              + L  F       +R+    +     ++D+ Y  
Sbjct: 280 GRHNALNSLGALVAGDYAGLSFRQMQETLLSFGNAR---RRFEVWADVDGIRVVDD-YAH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI------- 401
           +P  ++A ++   + +     R +AV     +    +     + A      ++       
Sbjct: 336 HPTEIRATLAAAREQA---GRRVVAVF--QPQRYSRTHWLMDEFATAFQDADVLVLTRIY 390

Query: 402 ---SHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                  + G    AL   +       V      + +  F+ + +  GD V+   +    
Sbjct: 391 SPPGERPIPGVSAEALARRIQANTGRPVAVISDQEEILRFLLAEVRPGDTVITMGAGDI- 449

Query: 457 FYRLINLLLEEF 468
            +++   L +  
Sbjct: 450 -WKVARALAQAL 460


>gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
 gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
          Length = 521

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 145/432 (33%), Gaps = 48/432 (11%)

Query: 6   TFHDLLQAIQGHSIGI-------VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           T  DL + +    +G        V    V  I+ DSRS++   A+ A+ G H+ G DF  
Sbjct: 8   TVGDLSRLLGTPLVGGSRATARAVADLVVVDITDDSRSVSTGHAYLALPGSHHHGLDFEG 67

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
            A + GA + + +        S ++P   V D       L+        +   +  +TG+
Sbjct: 68  RAAEAGAAVAISDR------ASATLPTLVVGDPRAVSGPLSAWFHGCPSNAMRVFGVTGT 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIG---------------SYNNHIGVPLTLARM-PVDV 160
            GKT+T  +L   L++  ++   I                +      +  TL RM     
Sbjct: 122 NGKTSTAHLLEAGLAAAGESSGLISGAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGGA 181

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                E+    + + R     VR      T +   HL     +EE    KA +F      
Sbjct: 182 TACAMEVSSHAIDQGR--VDGVRFRTVAFTNLGHDHLDYHHTMEEHYRVKASLFTAARAD 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  ++ DD     L A+S                AD            S    +    +
Sbjct: 240 -TAVVSVDDHHGRRLAAESEPPTWTCSVR---DVGADVYAEDVVCDGTGSRFTARTPYGA 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V    +G H   N L+ L  +     D   A + LS      GR +       Q F  
Sbjct: 296 VPVRLRVLGPHQVPNALVALTCLLADGIDPLAAAEGLSRLSRVPGRCEP--VNAGQSFTA 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D  Y  N    +A +  L  ++    GR I V+G     G   ++    L    + + 
Sbjct: 354 LVD--YMHNEPGQRALLPHLRSMAT---GRLILVIGA---TGGRDRTKRRPLGRTAASF- 404

Query: 401 ISHVWLSGFHVL 412
              V ++     
Sbjct: 405 ADLVIVTDESPE 416


>gi|294787902|ref|ZP_06753146.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
 gi|294484195|gb|EFG31878.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
          Length = 470

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 152/430 (35%), Gaps = 53/430 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T + A    +       IPV     +L  L +             IAI G+
Sbjct: 63  QGAQVVVTSTAIRADNPEVLAALEQHIPVIPRAMMLAELMRF---------KNGIAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +              IG  LT A     +  G + +  +   +  
Sbjct: 114 HGKTTTTSLTASVLGAAGLDP------TFVIGGKLTAAGTNAKLGSGNYIVAEADESDAS 167

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           FL   + P   V+T I   H+  +   I+++  A  +    +   G  FL  D +    +
Sbjct: 168 FL--YLSPVFTVVTNIDEDHMDTYDHKIDKLYQAFTDFIHRMPFYGKAFLCVDSAHVRNI 225

Query: 236 KAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKS------MEVVHHGI 288
             +      +   ++  S + AD           Q      ++ +        +VV +  
Sbjct: 226 LPEIK----RPYCTYSISDETADIYATNILAIGSQMKFTAHIRQQKNNEPLVFDVVLNIP 281

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYN 347
           G H   N L ++G+       VD     L+ F     R + Y    L QG   L+ + Y 
Sbjct: 282 GVHNVCNALASIGVALECKVPVDAIQAGLAGFSGVGRRFQSYGEMNLPQGGKALVIDDYG 341

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHV 404
            +P  M A ++      P        VL         ++    D + +LS  +   ++ V
Sbjct: 342 HHPVEMAATLAAARGAYPDNR----LVLAFQPHRYTRTRDLIDDFSAILSTADFLMLTEV 397

Query: 405 WLSGFHVLALKDALPRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G   +   D    +  V         + E ++ +   +   L DGDV++   + S  
Sbjct: 398 YAAGEQPIPHADGRSLARIVRARGKVEPIFCEDVNLIPETLLPFLQDGDVILTMGAGSIN 457

Query: 457 FYRLINLLLE 466
             R+   LL+
Sbjct: 458 --RVAQALLD 465


>gi|260775365|ref|ZP_05884262.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608546|gb|EEX34711.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 486

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 163/432 (37%), Gaps = 52/432 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA      A +VVV+T +      +       +PV    ++L  L +          
Sbjct: 71  FIGHAESNVHQASVVVVSTAINEENPEIKAARAARVPVVRRAEMLAELMRFR-------- 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  ++T   S   +  T+   G     +    T AR+       I 
Sbjct: 123 -HGIAVAGTHGKTTTTALVTQIYSEAELDPTFVNGG----LVKSAGTNARLGSS-RILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G +++AD ++  + Q  +Q    V  QG+ ++++
Sbjct: 232 VCIDDPVVRELIPRIS----RQVITYGFAEDADVRIENYCQEGQQGKFTVVRQGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    D ++ ++A++       R +            ++ 
Sbjct: 288 TLNIPGRHNALNAAAAIAVATEDDIDDESILRAMAGTQGTGRRFEHLGEFDTGNGSAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P  +   I      +   + R + +          ++  + D A VL   ++  
Sbjct: 348 DDYGHHPTEVDVTIHAAR--NGWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDVLL 403

Query: 404 ---VWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+ +G   +A  D  AL R+I         +      L   + + L DGD+V+ + +
Sbjct: 404 MLDVYSAGEKPIAGADGRALCRTIRSRGKIDPIFVSDSTTLPSVLANVLQDGDLVLTQGA 463

Query: 453 NSCGFYRLINLL 464
              G  ++   L
Sbjct: 464 GDIG--KVAKQL 473


>gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|85712532|ref|ZP_01043580.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
 gi|85693666|gb|EAQ31616.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
          Length = 489

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 158/439 (35%), Gaps = 57/439 (12%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKL 98
           AI    + GH  +     +GA +VVV++ +        +     IP+    ++L  L + 
Sbjct: 63  AIGAELFIGHRAVN---VEGADVVVVSSAIKPDNVELDAAQQQRIPIVRRAEMLAELMRF 119

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARM 156
                       IA+ G+ GKTTT  ++    +      T+   G  N+      + AR+
Sbjct: 120 R---------HGIAVAGTHGKTTTTSLVASVFAQAERDPTFVIGGLLNS----AGSNARL 166

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
                + I E   S    +      ++P +AV+T I   H+  +      +     +   
Sbjct: 167 GSS-KYLIAEADESDASFLH-----LQPMVAVVTNIEADHMDTYGGDFSRLLDTYVDFLH 220

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     L  +      +   ++G S++AD +   + Q   QS  +V 
Sbjct: 221 NLPFYGLAVMCIDDPAVRELIPRV----GRQAITYGFSEDADVRAVDYHQHQGQSHFKVL 276

Query: 276 LQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G + + V  +  G H   N L  + + S    + D   +AL+ F     R + +    
Sbjct: 277 RDGHAPLNVSLNLPGRHNVLNALAAVAVASDEGIEDDAIQRALNKFEGIGRRFEYHGECR 336

Query: 335 NQG------FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             G         ++ + Y  +P+ + A I    Q  P     +  V+         ++  
Sbjct: 337 VSGWSTETPDGVMVVDDYGHHPSEVDATIKAARQGWPD----KRLVMAFQPHRYSRTRDL 392

Query: 389 HIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFI 437
           + D   VLS          Y      +SG    +L  ++ +   +   Y    D L   I
Sbjct: 393 YEDFVNVLSQVDTLLLLEVYGAGETPISGADSRSLCRSIRQRGQLDPIYVSDTDALLEII 452

Query: 438 QSSLVDGDVVVVKSSNSCG 456
              L  GD+++ + + + G
Sbjct: 453 GDVLQPGDLLLTQGAGNVG 471


>gi|311693456|gb|ADP96329.1| UDP-N-acetylmuramate-L-alanine ligase [marine bacterium HP15]
          Length = 481

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 139/401 (34%), Gaps = 44/401 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  S  +P+    ++L  + +             IA+ G+ GKTTT  ++   L  
Sbjct: 93  PEVVAARSRRVPIVPRAEMLAEIMRYR---------HGIAVAGTHGKTTTTSLIASILGE 143

Query: 133 IK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                T+   G  N+      T A++     + + E   S    +        P I+V+T
Sbjct: 144 AGLDPTFVIGGKLNS----AGTNAQL-GGSRYLVAEADESDASFLHLT-----PVISVVT 193

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +   +E++     +    L   G   +  DD + + +  +      + I +
Sbjct: 194 NIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDGYVQEIIPRIS----RAIIT 249

Query: 250 FGKS-KNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +G     AD++         ++   V+       + V     G H   N L  + + +  
Sbjct: 250 YGIDNPEADYRAESINSDGLRTHFVVKRPAGRSDLTVELKMPGRHNVLNALAAIAVATDE 309

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D   + L+ F     R + Y           + + Y  +P  ++A I       P 
Sbjct: 310 GVADDAICRGLAGFAGVGRRFQVYGDYQTPKGTVTLVDDYGHHPTEVEAVIRAAHDAWPD 369

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDA 417
              RR+ +L         ++  + D   VLS          Y+     + G    AL  +
Sbjct: 370 ---RRLVMLYQPHRF-TRTRDLYEDFVRVLSEVDGLLLMDVYSAGEPAIPGADGRALCRS 425

Query: 418 LPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +   V   + E    +   + + L DGD+++ + +   G
Sbjct: 426 IRQRGQVEPVFVEDNLEIESLLANVLQDGDLLITQGAGDIG 466


>gi|294085900|ref|YP_003552660.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665475|gb|ADE40576.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 473

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 151/410 (36%), Gaps = 52/410 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   V +  +  +P+    ++LG L +L            +A+ G+ GKTTT  ++
Sbjct: 76  AIKADNPEVVAARAGFLPIVHRAEMLGELMRLR---------WSVAVAGTHGKTTTTSLV 126

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L  + I  T    G          + AR+       + E   S     +     ++P
Sbjct: 127 ATLLDGAQIDPTVINGGIITGW----GSNARLGKGKWM-VVEADESDGSFAK-----LKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T I P HL +    E + +A       +   G   L  D    + + A       
Sbjct: 177 TVAVVTNIDPEHLDHHGSFEALETAFLNFVSSIPFYGFATLCIDHPAVQRMMAHIK---D 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNML 297
           + I ++G S NAD +    +        +V L        + ++ V    +G H  QN L
Sbjct: 234 RRIITYGMSANADVRATNLRVEGRNMLFDVLLSDRLVGEMERIDNVLFPMLGDHNVQNCL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   +  D      +L+ F    G G+R+         T+ID+ Y  +P  +KAA+
Sbjct: 294 AAIAVALEMNIDAKKIKDSLAAFG---GVGRRFETKGVSDGVTIIDD-YGHHPVEIKAAL 349

Query: 358 SV----------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                       ++ + PH   R   +  D C  G  + +  + +A+V   Y      + 
Sbjct: 350 QAGRMMCGDNKLIAVVQPHRYSRLADLFTDFC--GCFNDADDVLVADV---YAAGETPIE 404

Query: 408 GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           GF   AL + L    H      ++   L   I +    GD+V+   +   
Sbjct: 405 GFDKAALVEGLRDHGHKGPAALDSQSALAQEIMNRTNKGDLVMCLGAGDI 454


>gi|197124217|ref|YP_002136168.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp. K]
 gi|220918997|ref|YP_002494301.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|229486422|sp|B4UES2|MURC_ANASK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763735|sp|B8J8E9|MURC_ANAD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196174066|gb|ACG75039.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter sp. K]
 gi|219956851|gb|ACL67235.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 458

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 138/402 (34%), Gaps = 43/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V       IPV    ++L  L +L            +AI GS GKTTT  M
Sbjct: 75  SAVKRDNPEVLEARRRKIPVIPRAEMLAELMRLKYG---------VAIAGSHGKTTTTSM 125

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               L+       A +G   N  G    L +     D+ + E   S    +R     + P
Sbjct: 126 AAHLLAHAGLDPTAVVGGKVNAFGSNAKLGKG----DYMVVEADESDGSFLR-----IPP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA++T I P HL ++   + +     +    +   G   L  D    + +         
Sbjct: 177 TIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVE---- 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           K   ++G+S  AD++    +        +   + +++       +G H A N L  + + 
Sbjct: 233 KRAVTYGESHQADYRAEAIELSGHAVRFDAFRRDEALGRFEVAMVGRHNALNALAVIALG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +       +         +G  +R+         T++D+ Y  +PA +KA +    + 
Sbjct: 293 DEMGIPP---LVTREALRSFQGVQRRFTVRGEAAGVTVVDD-YGHHPAEVKATLQGAREA 348

Query: 364 SPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
                 RR+  L            M E + +F+  D+  +  +Y      + G     L 
Sbjct: 349 ----FKRRVVCLFQPHRYTRTRDLMAEFATAFNDADVLLLTDIYAAGEEPIPGATAANLA 404

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           DA+    H  V        L    +  +  GD+V+   +   
Sbjct: 405 DAIRAWGHRDVTLVP-RAELARAARERVRPGDLVLTLGAGDV 445


>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL F2-515]
          Length = 242

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 31/249 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            I+ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVD-----VDFGIFE 166
             ++   +    +    IG+    IG             LTL     D     V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------ 220
           +    L + R   +     +AV   ++  HL     +EE A+AK+ +F  L  +      
Sbjct: 176 VSSHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNP 233

Query: 221 GTIFLNYDD 229
               LN DD
Sbjct: 234 KIAVLNADD 242


>gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia sp. Ejp617]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 162/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  A  G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIF 165
           TTT ++L      + +T A +G+  N +   L               L    VD    + 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +    +AK  +F    + G   +
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE-HQVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD        K     +                 +  K       + +         +
Sbjct: 240 NADDEVGRRWLEKLPD-AVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGD 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +D      S   P  G   R       G  T++
Sbjct: 299 IDSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTG---RMEVFSAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A   L+    H +GR   + G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKA---LAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L  +                      GD+V+V  K 
Sbjct: 408 VVVITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|323142002|ref|ZP_08076853.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413534|gb|EFY04402.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 464

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 150/424 (35%), Gaps = 51/424 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VV++T +  +   L       IPV    DVL A+   A    +             G
Sbjct: 69  AEAVVISTAIHPNNPELMEARKRGIPVLHRSDVLAAVMNAADGVAVAGA---------HG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++          A     +  + +   ++ +  +   G     ++   E    
Sbjct: 120 KTTTSAMISCI--------AAESGIDPTVIIGGEVSSLGGNARNGAGRFVVAEADESDGS 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + P++AV+T I   HL ++   E I  A  +    +++ G   L +D++    L A+
Sbjct: 172 FLKLYPYLAVVTNIEDDHLDHYGTEENIYQAFKQFVGNIKEGGKAVLCFDNAKVRRLAAE 231

Query: 239 SHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNM 296
           +     K + ++G + + AD+  R      + +  ++  +G+ +  VH    G H   N 
Sbjct: 232 T----DKEVITYGVEGEGADYIARDISYGVDGTSYKLYYKGEFVTEVHLIVPGRHNVLNS 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +        +    D  +   +      G  +R+          ++D+ Y  +P  +   
Sbjct: 288 MGAFAAAHEMGIATDKIL---ASLKKFGGAKRRFETKGKVNGVWVVDD-YAHHPTEIGVT 343

Query: 357 ISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           +    Q           PH   R   +  + CE  +           +  +Y  S   ++
Sbjct: 344 LKAARQTKPERLLCVFQPHRYTRTKLLFSEFCECFKDCDEL-----ILTDIYAASEEAIT 398

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           G   + L + +       V Y   +     +++  +  GD+V+   +     +++   L+
Sbjct: 399 GVSSMHLAEGIKAATGQEVLYIGKLTKAEEYLERVVRPGDLVMTIGAGDV--FKIGEELV 456

Query: 466 EEFP 469
            E  
Sbjct: 457 RELE 460


>gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 182/487 (37%), Gaps = 65/487 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL A+ G  I   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL-ALWGIDI---PELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+      A  G++     +PV  +DD+   L+KL         +K  ++ +TG+ GK
Sbjct: 61  AAVIAEAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARM-PVDVDFG 163
           TTT ++L        +T A +G+  N                + + L L ++      F 
Sbjct: 121 TTTTQLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLVNQKATFA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G I+     +     V T ++  HL     ++   +AK  +F         
Sbjct: 181 AMEVSSH--GLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSN-HDVKQK 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQ 275
            +N DD+  +   ++       T+      +N              +     + + +   
Sbjct: 238 IINADDAVGQKWLSRLPEAVAVTM------ENCLPENWQGRWLLANEVHYHDKGASIAFT 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               S  +    +G     N+L+ L  +  L   ++  +   S   P  G   R      
Sbjct: 292 SCWGSGTLNSPLMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCG---RMEVFAA 348

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G  T++ + Y   P +++ A   LS    H +G+   V G   +  +  +     +AE+
Sbjct: 349 EGRPTVVVD-YAHTPDALEKA---LSAARLHCKGQLWCVFGCGGDRDKGKRPLMGGVAEL 404

Query: 396 LSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDV 446
                   V ++  +  +      + D L   +    + T+ G    + S++    + DV
Sbjct: 405 ----GADRVIVTDDNPRSEEPHSIVADILKGFVDPGRAMTIHGRVEAVTSAVMQATEDDV 460

Query: 447 VVV--KS 451
           ++V  K 
Sbjct: 461 ILVAGKG 467


>gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
 gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 158/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T + +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSSVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 YAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
 gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
          Length = 504

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 143/386 (37%), Gaps = 44/386 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQE------AFFAIKGPHYDGHDFILHAVQKGAGLV---VVNT 72
           +P+  V  I  D+R + P +       F A +G   DGH F   AV +GA  V       
Sbjct: 22  LPEVEVRRIVQDTRELTPSDPATEPFIFVARRGAAVDGHRFAARAVAQGAVAVVGEATPE 81

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +     + P   V D   AL +LA             + +TG+ GKTTT  +L   L
Sbjct: 82  EQASFAWRHAAPYIQVPDDRAALAQLAATLYGHPSRALFTVGVTGTDGKTTTATLLHHLL 141

Query: 131 SSIKKTYAC----------IGSYNNHIGVP------LTLARMPVDVDFGIFELGMSHLGE 174
              + T              G    H   P       TLA               SH   
Sbjct: 142 QGDRPTGLLSTAGVRLGEAEGGLFGHFTTPEAPEVQRTLAAFVARGLRAAVIESSSHGFA 201

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R L  +    + ++T ++P HL      E   +AKA++   + +  T  LN DD  +  
Sbjct: 202 QRRLDAI-DYDLGILTNLSPEHLDFHGTFENYRAAKAQL---MARARTSILNADDPNYAY 257

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A++     + I ++G  + A ++  + ++        +   G+S       +G +   
Sbjct: 258 FAARA-----RRIITYGVVRAATWRATEVRELPGALEWRLTHAGRSYPARLPMVGSYNVY 312

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L         +  A+  L+ F    GR +  + A     F L+ + +   P +++
Sbjct: 313 NALAALAAACEAGVPLAGALARLATFPGVPGRMQVVQTAP----FALVVD-FAHTPPALE 367

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCE 380
            A++ L    P   G+ I V+G   E
Sbjct: 368 KALAALR---PQVRGKLIVVVGAAGE 390


>gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 161/455 (35%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L          K  ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +       G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +       + E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFSAPGKTTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+   V G   +  +  +     +AE  +      V ++  +         + D L   
Sbjct: 353 TGKLWCVFGCGGDRDKGKRPLMGAIAEQFA----DVVVVTDDNPRTEEPRAIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +    ++ M+G    + +++    + DVV+V  K 
Sbjct: 409 LDAGRAKVMEGRAEAVTNAIMQAQENDVVLVAGKG 443


>gi|332991941|gb|AEF01996.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas sp. SN2]
          Length = 482

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 165/442 (37%), Gaps = 55/442 (12%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           +     K  + DG D I+      +  +      + +     IP+    ++L  L +   
Sbjct: 62  DVKIGHKAENVDGMDVIVV-----SSAINEANPEIITAREQRIPIIRRAEMLAELMRFR- 115

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVD 159
                     IA+ G+ GKTTT  +++   +         IG   N  G    L R    
Sbjct: 116 --------HGIAVAGTHGKTTTTSLISTIFAQAQYDPTFVIGGLLNSAGTNARLGR---- 163

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
             + I E   S    +      ++P ++V+T I   H+  +     ++     E    L 
Sbjct: 164 SRYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFSKVKDTFVEFLSNLP 218

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQ 277
             G   +  DD+  + +  +      ++I ++G   + D + +       Q+   V + +
Sbjct: 219 FYGQAIVCGDDANIQEISPRI----GRSIITYGFEAHNDVRAQDITLSFGQANFTVIRPE 274

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----A 333
            + ++V  +  G H   N L  + + +    D D  + AL+ F    G G+R+       
Sbjct: 275 REPLKVTLNLTGNHNVLNALAAIAVATDEGIDDDAIVTALASFG---GIGRRFEVLGDFK 331

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            + G  TL+D+ Y  +P  +KA I+      P    R + V          ++  + D  
Sbjct: 332 TSVGNVTLVDD-YGHHPTEVKATIAAARANWPE--SRLVMVY--QPHRFTRTRDLYEDFV 386

Query: 394 EVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLV 442
            VLS          Y  S   + G    +L  ++ +   +   Y    + L   + + LV
Sbjct: 387 NVLSTVDVLLLLDVYPASEQPIEGADSKSLCRSIRQRGQIEPVYVGGKEALPAILANILV 446

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +GD+V+ + + + G  ++  LL
Sbjct: 447 EGDIVMTQGAGNIG--QIAKLL 466


>gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
 gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
          Length = 475

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 133/393 (33%), Gaps = 47/393 (11%)

Query: 53  GHDFILHAVQKGAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   G   VVV           V       +PV    ++L  L +L       
Sbjct: 59  GH----KAENLGDAAVVVTSTAIKRGNPEVELALETRVPVIRRAEMLAELMRLKS----- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  M+   L +       I   N  I           + D+ + 
Sbjct: 110 ----TVAVAGTHGKTTTTSMIAALLDAGGVDPTVI---NGGIINSYGSNARLGNSDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   IAV+T I P HL ++   + +  A  E    +   G   L
Sbjct: 163 EADESDGSFLR-----LDGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFVGNVPFYGAALL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + +  +      + I ++G S  AD +    +     +  +V ++ +      
Sbjct: 218 CLDHPEVQAILPRVQ---DRRIVTYGFSAQADIRGENVRPVPGGNLFDVLIRDRDGHVEK 274

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +++    G H   N L  +G+   L    D        F   + R  +      +G  
Sbjct: 275 ISDILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKRRFTKVGEVQLEGGV 334

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHI-----DL 392
             + + Y  +P  ++A ++   + +    GR +A++       + +L   F       D+
Sbjct: 335 ATVIDDYGHHPVEIRAVLAAAREGAL---GRVVAIVQPHRFTRLRDLMDEFQQAFNDADI 391

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                +Y      + G    AL   L R  H H
Sbjct: 392 VYAAPVYAAGEQPIEGVDSAALVAGLKRRGHRH 424


>gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
 gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
          Length = 514

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 155/456 (33%), Gaps = 48/456 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++   + F A      D    I  A+ +GA  V+V  D  A     S     V D L
Sbjct: 34  DSRAVQAGDVFLAYAVDGVDNRSHIAGALARGAAAVLVQPDGFAIDALDSAVTHAVPD-L 92

Query: 93  GALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           GAL                  + +TG+ GKT+  + +  ALS+++   A IG+  + +  
Sbjct: 93  GALAGEIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIATALSALRTPCAVIGTLGSGMPG 152

Query: 150 ---------------PLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                            +LA++  +    +  E+    L + R   +     +AV T + 
Sbjct: 153 RLVATGFTTPDAPQLQRSLAQLRDEGAKAVAMEVSSHALQQGR--VNGTAFDVAVFTNLT 210

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL      E   +AKA++F          +N DD+    L A     G     ++G  
Sbjct: 211 QDHLDYHRTFEAYEAAKAKLFAW-RGLRHAVVNRDDAAGARLLATLA--GRVRTVAYGID 267

Query: 254 KNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + A+           + +  +  +   ++    S EV    +G     N+L  LG + + 
Sbjct: 268 ERANAPEADRQLIAHEVRATATGTAFRLESSWGSAEVEVGTLGLFNVSNLLAVLGTLLVA 327

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               + A+  L       GR +R           L+   Y   P +++  +  L  I+  
Sbjct: 328 DVPFEAALAELRRLESVNGRMQRL-GGRVANDEPLVVVDYAHTPDALEKTLEALRPIAEA 386

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
             G  + + G   +     +     +AE L+      V ++  +  +         +   
Sbjct: 387 RGGALVCMFGCGGDRDATKRPLMGGIAERLA----DRVVVTSDNPRSEPPLAILEQIVAG 442

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         E      L         DVV++  K 
Sbjct: 443 MKTPGAALRIEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 150/425 (35%), Gaps = 40/425 (9%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLV--VVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAV 100
           A+    + GHD    A    A +V   +  D         L IPV    D L AL     
Sbjct: 52  ALGATVHLGHDAAHLAEDTSAVVVSSAIREDNPELVRARELGIPVVHRSDALAAL----- 106

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                +    +A+ G+ GKTTT  ML ++L+++          +    +   L     + 
Sbjct: 107 ----MTGTRPLAVAGTHGKTTTTSMLAVSLTTLG--------LDPSYAIGGDLDAPGSNA 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E+ ++   E     H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 155 HHGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +       TI ++G +++AD ++RK       S + V + GK 
Sbjct: 215 GTLVISADHEGARELTRRVRERADLTIVTYGSAEDADVRVRKVSPRGLTSEVTVAIDGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   +   +R +         
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVK---RRLQLKGEAAGVQ 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------ 394
           ++ +SY  +P  M A +     +    EGR + V      +   +Q    ++ +      
Sbjct: 332 VV-DSYAHHPTEMAADLEA---MRGAVEGRILVVF--QPHLFSRTQELGKEMGQALALAD 385

Query: 395 ---VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              VL +Y      + G      +         V      D +   +      GD+V+  
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVLTM 445

Query: 451 SSNSC 455
            +   
Sbjct: 446 GAGDV 450


>gi|153214069|ref|ZP_01949203.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
 gi|124115495|gb|EAY34315.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
          Length = 486

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 138/407 (33%), Gaps = 40/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IP+    ++L  L +             IA+ G+ GKTTT  ++T   
Sbjct: 94  QNPEIQAAREKRIPIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S            N  +                I E   S    +      ++P + ++T
Sbjct: 145 SEAGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVTIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 197 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVS----RQVIT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q  +Q    V  +GK ++++  +  G H A N    + + +    
Sbjct: 253 YGFSDDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++A++       R              ++ + Y  +P  +   I           
Sbjct: 313 RDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK- 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA--LPRSIH 423
            R + +          ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 372 -RLVMIF--QPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIR 428

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +      L   + + L DGD+V+ + +   G  ++   L
Sbjct: 429 SRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGDVG--KVARHL 473


>gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 161/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      ++           +         E+  H IG     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  GR + +      G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCGRMEVFTVP---GKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 162/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  A  G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIF 165
           TTT ++L      + +T A +G+  N +   L+ A                 VD    + 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +    +AK  +F    + G   +
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE-HQVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD        K     +                 +  K       + +          
Sbjct: 240 NADDEVGRRWLEKLPD-AVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGN 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +D      S   P  G   R       G  T++
Sbjct: 299 IDSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTG---RMEVFSAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A   L+    H +GR   + G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKA---LAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L  +                      GD+V+V  K 
Sbjct: 408 VVVITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
 gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 153-1]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 157/451 (34%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +  A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEPSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSA-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           Y++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 YAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|149910628|ref|ZP_01899266.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
 gi|149806356|gb|EDM66331.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
          Length = 485

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/429 (17%), Positives = 155/429 (36%), Gaps = 50/429 (11%)

Query: 63  KGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VVV+T        + +     IPV    ++L  L +             IAI G+
Sbjct: 77  RNASVVVVSTAIDLTNPEIVAAHENRIPVIKRAEMLAELMRFR---------HGIAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  ++T                N  +              + I E   S    + 
Sbjct: 128 HGKTSTTALVTGIYHEAGLD---PTFVNGGLVKSTGTNAGLGTSRYLIAEADESDASFL- 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               L++P +AVIT I   H+  +     ++     +    L   G   +  DD+  E L
Sbjct: 184 ----LLQPMVAVITNIEADHMDTYGGDFAKLEKTFVDFLHNLPFYGLAVMCADDAVIEKL 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQ 294
                    + + ++G ++NAD ++  + Q   +S   +  + +  + V  +  G H A 
Sbjct: 240 IPDV----GRQVVTYGFAENADVRIIDYVQKGHKSHFTICRKDRDDLRVSLNSPGQHNAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    + + +    D    + AL+ F     R ++     +     ++ + Y  +P  + 
Sbjct: 296 NATAAVAVATEDGIDDRAIVTALANFAGTGRRFEQLGEFDSGAGNVMLVDDYGHHPTEVD 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVW 405
             I+      P    R ++V          ++  + D A VLS          Y      
Sbjct: 356 VTITAARAGWPEK--RLVSVF--QPHRYTRTRDLYEDFANVLSKVDLLFLLEVYPAGEEP 411

Query: 406 LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + G    +L  ++ +  ++   +  + D +   +   L DGD+V+ + + + G       
Sbjct: 412 IPGADSRSLCRSIRQRGNIEPIFVSSPDEIPAILAEHLQDGDLVLTQGAGNVG------A 465

Query: 464 LLEEFPAIQ 472
           L +E  A++
Sbjct: 466 LAKELAAME 474


>gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
 gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
          Length = 465

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 144/407 (35%), Gaps = 49/407 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +     +PV    ++L  L ++            IA+ G+ GKTTT  M
Sbjct: 78  SAIKPGNPELDAARQRGLPVVRRAEMLAELMRMKSN---------IAVAGTHGKTTTTTM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G +N  +     +     +   G  E  +    E     + +   
Sbjct: 129 VAALLEE--------GKFNPTVVNGGIIHAYGSNARVGSGEWMVVEADESDGTFNRLPAT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE + +   +    +   G      DDS  + L  K   +  +
Sbjct: 181 IAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGK---ITDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +          +  +V LQ + +   +      G H   N L  + +
Sbjct: 238 RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEDLTIKDCALPMPGDHNVSNALSAIAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F   +G G+R+      G  T+ID+ Y  +P  + A +    Q
Sbjct: 298 ARYLGMKAEEIRAALAAF---KGVGRRFTRVGEVGGVTIIDD-YGHHPTEISAVLKAARQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV------LSLYNISHVWLSGFHVLALK- 415
            S   +GR +AV              H   A+         +  I+ V+ +G  V+    
Sbjct: 354 AS---DGRILAV-----HQPHRYTRLHHHFADFCACFNDADVVAITEVFAAGEDVIEGAT 405

Query: 416 --DALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             D +   I   + +         L   ++     GD+VV   + S 
Sbjct: 406 RDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMVVCLGAGSI 452


>gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 133/360 (36%), Gaps = 37/360 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI G+ GKTTT  M+T+    + K   + IG    +IG          +V+ G  ++ +
Sbjct: 105 IAIAGTHGKTTTTSMITLVFDKAEKNPTSLIGGMFKNIGG---------NVEIGNSDIFI 155

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   E         P +AVIT I   HL  F  + +I ++  +    +++ G +  N DD
Sbjct: 156 SEACEYVDSFLQFYPKVAVITNIEEDHLDYFEDLSQIKNSFLKFANQVKEGGFVIANGDD 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM---EVVH 285
                          + +Y +G ++  DF +   +         ++      +       
Sbjct: 216 ENVRDTLKDCK----RNVYYYGFNEGNDFIIDNLEFDDFGYPCFDIFYANDGVLIDNYKL 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N    +    +L  + +    A+  F    G G+R+     +    + D+ 
Sbjct: 272 NVFGKHNVYNATSAIVSACMLDIEKEDIKNAIEKFT---GVGRRFEYIGEKDGVRVFDD- 327

Query: 346 YNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  +K+ +  +  +          PH   R  A+  +  E  + +     D+A   
Sbjct: 328 YAHHPTEIKSTLDAIKSLKKNRFFSIFQPHTYTRTKALFKEFVECFDET-----DIAIFA 382

Query: 397 SLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y              L D +  R    +Y ++ D +  F++ +  DGD++    +   
Sbjct: 383 DIYAAREPIDETVSSSMLCDEVNRRGKDAYYFDSFDKIVQFLRENANDGDLIFTIGAGDV 442


>gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 137/379 (36%), Gaps = 35/379 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           ++    +IA++G+ GKTTT  M+   L             N  + V   + ++  +   G
Sbjct: 98  MKDYKNVIAVSGTHGKTTTTSMIGYILKKAL--------LNPTVLVGAFVKQLGGNFCIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  +    E         P I VI  I   HL  F  IE I  +  +    + + G I
Sbjct: 150 SSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKIPQNGFI 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD     + +       + +  F     ADF       C+     +V  +      
Sbjct: 210 VANLDDENVYSVASYLK----QNVIYFSTKTKADFWADNITSCNGYYEFDVVNKDFKHLC 265

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               +  G+H   N L    +   L  D +T  +A+  F    G  +R           L
Sbjct: 266 HIKLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEF---CGASRRLEKLGKIDGIVL 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
            D+ Y  +P  ++A +  L +++      ++ V+        L +S      + LSL + 
Sbjct: 323 YDD-YAHHPTEIEATLRTLKKLAKE----KVIVIFQPHTFSRL-KSLMEGFVKSLSLADK 376

Query: 401 --ISHVW------LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             ++ V+      + G     L + L +  +   Y +  + +  ++ ++   GD+V    
Sbjct: 377 VIVTDVYAAREKNVYGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQKGDIVATIG 436

Query: 452 SNSCGFYRLINLLLEEFPA 470
           +      + I L+L++ P 
Sbjct: 437 AGDVN--KCIELILDKSPV 453


>gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 495

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 166/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEAADGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 495

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 167/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  ++ +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVVYLNQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +     + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTNLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKG 467


>gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
 gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
          Length = 471

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 159/453 (35%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK   L      S 
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAK---LSDAVAVSM 237

Query: 251 GKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               N +      +          + +         E+  H +G     N+L+ L  +  
Sbjct: 238 EDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +   +K  +   P  G   R       G  T++ + Y   P +++ A+        
Sbjct: 298 LGYPLSDLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARL 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIH 423
           H  G+   V G   +  +  +     +AE  +   +       +      + D L   + 
Sbjct: 351 HCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 424 VHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
             +++ M+G    +  ++    + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 3431]
 gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia fergusonii ECD227]
          Length = 471

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 498

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 158/417 (37%), Gaps = 47/417 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +     L I V     +LG+L +         +   IAI+G+ GKTTT  M
Sbjct: 90  AAIQEGNPELKVARQLGIKVVKYSQILGSLMQ---------EKRGIAISGTHGKTTTSAM 140

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++  L  + +  TY  IG     IG    L +           L ++   E       + 
Sbjct: 141 ISTILKKAELDPTY-VIGGEVPDIGGNAHLGKGN---------LFVAEACEYNSSFLDLV 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I VIT I   HL  +  +EEI +A       + K G + +N DD    +   +S    
Sbjct: 191 PSIGVITNIEEDHLDYYGNLEEIVNAFGHFANLIAKNGLLVVNDDDRNVAVAAKRSVCKR 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
                ++     + +  +K    ++  +   V  +GK   +      G H   N L  + 
Sbjct: 251 E----TYSLRHTSHWYAKKILPTTQGINKFRVYNRGKIFGDFWLKIPGSHNILNALAAIA 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + + +  D +    +L  F   +G  +R++    +   T+ID+ Y  +P  +   +    
Sbjct: 307 VCTSIGVDKEIIKTSLESF---KGAKRRFQIVAIKNNITIIDD-YAHHPTEIDVTLKAAR 362

Query: 362 QISPHGEGRRIAVLGDMCE-------MGELSQSFH----IDLAEVLSLYNISHVWLSGFH 410
           ++ P    R+I  +    +       + +LS+SF+    + LA++    +      S   
Sbjct: 363 ELYP---ARKICCVYQPHQYSRTRHLLKKLSESFYLADKVALADIYESRDNDFEKTSISS 419

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   ++     + + Y   M+ +   +  +   GDV++   +     +++ + L E 
Sbjct: 420 LKLYEEIRKTGVDIQYYPQMEYITDMLCLNAKPGDVIITMGAGDI--WKVAHELAER 474


>gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 459

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 155/402 (38%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +     +     +P+    ++LG L        + +  T IA++G+ GKTTT  M
Sbjct: 77  AAVHADNPEFIAAKEHQLPMLTRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G  +  I V   L  +  ++  G  ++ ++   E         P 
Sbjct: 129 ISHIL--------LAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFLPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  +   H+  F  +++I  +       L K GT+ +N + S +E + A  +     
Sbjct: 181 IGIILNVEEDHMDFFKDLDDIRHSFHRFAALLPKDGTLIINSEISQYEQIIAGLNC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G   +AD+  +  +  +    S+  +    K   +     G H   N L  +   
Sbjct: 237 NVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNVSNALSAIITG 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           ++L  D++   K L  F    G  +R+         T+ID+ Y  +P  ++A +S     
Sbjct: 297 TLLGIDLEKIKKGLLSFT---GTDRRFEYKGTLDGVTIIDD-YAHHPTEIEATLSAAQHY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  +   L+ + H+ LA++ +      +   G    AL
Sbjct: 353 PHREIWCIFQPHTYTRTKAFFHEFAQ--ALTLADHVILADIYAARETDTL---GMSSEAL 407

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            DA+       +Y  + D +  F++   + GD+++   +   
Sbjct: 408 SDAIRELGGDSYYFSSFDEIKNFVKEKCIHGDMLITMGAGDV 449


>gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 495

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 165/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +       +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri
           2930-71]
          Length = 471

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|90416337|ref|ZP_01224269.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
 gi|90332062|gb|EAS47276.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
          Length = 485

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 166/437 (37%), Gaps = 55/437 (12%)

Query: 51  YDGHDFILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           + GH     A   GA +VV      V    +A+  +  IPV    ++L  L +       
Sbjct: 64  FIGHS---EANIIGANVVVKSSAVTVENTEIAAARAQGIPVVRRAEMLAELMRYR----- 115

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDF 162
                 IAI G+ GKTTT  ++T  L+      T+   G  N+      T A++     +
Sbjct: 116 ----HGIAIAGTHGKTTTTSLITAILAEDGRDPTFVVGGRVNS----AGTNAKL-GGSRY 166

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
            + E   S    +      ++P +AV+T I   H+  +      +     E    L   G
Sbjct: 167 LVAEADESDASFLH-----LQPMVAVVTNIEADHMETYDFDFSRLTKTYIEFLHNLPFYG 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-- 279
              +  DD     L         + + ++G S +A +++R       +S   ++      
Sbjct: 222 LAVMCIDDPVIRDLLVDVA----RPMLTYGFSDDAAYRVRDLTVDQGRSTFVIERPDGLA 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
            ++V  +  G H A N    + + S         I+ LS F     R + Y    L  G 
Sbjct: 278 ELQVSLNMPGRHNALNAAAAIAVASDEGISDRAIIQGLSSFSGVGRRFEIYGDYQLESGG 337

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ + Y  +P  +KA +  +    P  + R + +          ++  + D  +VL+ 
Sbjct: 338 SAMLVDDYGHHPTEIKATVDAVRGGWP--DKRLVMIF--QPHRYTRTRDLYEDFVKVLAE 393

Query: 399 YNI---SHVWLSGFHVLALKDALPRSIHVH--------YSETMDGLFLFIQSSLVDGDVV 447
            ++     V+ +G  ++A   +   S  +         Y+ET++ +   +   + D D+V
Sbjct: 394 VDVLILLAVYPAGEEMIAGASSKNLSGSIRQRGTVDPIYAETIEEIPALLNGLVQDNDLV 453

Query: 448 VVKSSNSCGFYRLINLL 464
           + + + S    +L+ +L
Sbjct: 454 ITQGAGSVN--KLVAML 468


>gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 169/485 (34%), Gaps = 61/485 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  + +DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDAPACALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             +V   D  A+ G++     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAIVAEADGEAADGTVREMHGVPVVYLSSLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L     ++ +  A +G+  N +                + +             
Sbjct: 121 TTTTQLLAQWSQALGEMSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F    + G + +
Sbjct: 181 AMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWLLFAE-HRVGQMII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQ 277
           N DD       AK       T+      +N           +  +       + +     
Sbjct: 240 NADDEVGLRWLAKLPDAVAVTM------ENNLVPGCRGRWLKATQIDYHDNGATIAFDSS 293

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               E+    +G     NML+ L  +  L   +D  + A S   P  G   R      +G
Sbjct: 294 WGQGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCG---RMEVFHAEG 350

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T++ + Y   P +++ A+        H +G+   V G   +  +  +     +AE L+
Sbjct: 351 KPTVVVD-YAHTPDALEKALEA---ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLA 406

Query: 398 LYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V ++  +  +         +   L  +  V                  + DVV+
Sbjct: 407 ----DRVVVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVL 462

Query: 449 V--KS 451
           V  K 
Sbjct: 463 VAGKG 467


>gi|331701578|ref|YP_004398537.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128921|gb|AEB73474.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 443

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 133/362 (36%), Gaps = 51/362 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I ++G+ GKT+T  +L   LS I  T   IG  +          +   +  F ++E
Sbjct: 103 GKTSIGVSGAHGKTSTTGLLAHVLSGIAPTDYLIGDGSG---------KGVPNARFFVYE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   +  I+++A A  + F    K G IF  
Sbjct: 154 A-----DEYRRHFLATEPDYAIMTNIDFDHPDYYKSIDDVADAF-QTFANQTKKG-IFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     LKAK        IY +G     DFQ    K+ +  S  +V  +GK++     
Sbjct: 207 GDDKRLRQLKAKV------PIYYYGLKDTDDFQAVDVKRTTSGSSFDVTYKGKNLGNFSV 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D+D   K L  F   + R    + A      T+ID+ 
Sbjct: 261 PLFGEHNIFNSLAVIAVAYFEDVDLDEIRKELKTFQGVKRRFAERKIA----GMTIIDD- 315

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +KA I    Q       ++IAV+         + +   D A+ L+L     V+
Sbjct: 316 YAHHPTEIKATIDAARQ---EYPSKKIAVVFQ-PHTFSRTIALMDDFAKSLNL--ADEVF 369

Query: 406 LSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L+                 L   + +   +   + M  L  +      D DVV+   +  
Sbjct: 370 LTSIYSSPRESHGKVSSEDLSKKITKGGRILSVDNMSPLLDY------DNDVVIFMGAGD 423

Query: 455 CG 456
             
Sbjct: 424 IQ 425


>gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
 gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
          Length = 459

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 154/426 (36%), Gaps = 49/426 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
              ++ G   VV    +              IP+    ++LG + K    A        I
Sbjct: 63  AENIKDGIDAVVYTAAIHEDNPEFMEVKRRGIPMMSRAELLGQMMKNYREA--------I 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+T                N  I V   L  +  ++  G  E  ++ 
Sbjct: 115 AIAGTHGKTTTTSMVTEIFMEADN--------NPTISVGGILNSIGGNIRVGGPEFFVTE 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P +AVI  I   HL  F  I++I  +  +  E + + GTI +N     
Sbjct: 167 ACEYTNSFLSFYPTMAVILNIEEDHLDFFKDIDDIRRSFRQFIEKVPENGTIIMNGTIEN 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-G 289
           +  L A +       + +FG SK  D+           +   ++ ++G+  E +  G+ G
Sbjct: 227 WRELTAGAAG----KVVTFGNSKENDYSFDAVVYDEYARPSFDLYIKGEKKERISLGVQG 282

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +     A ++ A + L  F    G  +R+         T+ID+ Y  +
Sbjct: 283 EHNVYNALGAIAVAMESGAGLEAAGRGLLKFT---GTNRRFEKKGELKGITIIDD-YAHH 338

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           P  ++A +      + +   +RI            +++F  + A+ LSL         Y 
Sbjct: 339 PQEIEATLKA----AENYPHKRIC-CAFQPHTYTRTKAFMKEFAQALSLADCVMLTDIYP 393

Query: 401 ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                  G     +   L  + +   Y  T D +  FI  +   GD+++   +      +
Sbjct: 394 ARETDTLGVSSADIVALLKEKGVDAWYLPTFDDMEKFILENCTQGDLLITMGAGDI--VK 451

Query: 460 LINLLL 465
           +   LL
Sbjct: 452 VGEELL 457


>gi|85373187|ref|YP_457249.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter litoralis
           HTCC2594]
 gi|122545203|sp|Q2NCY9|MURC_ERYLH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84786270|gb|ABC62452.1| UDP-N-acetylmuramate-alanine ligase [Erythrobacter litoralis
           HTCC2594]
          Length = 474

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 145/429 (33%), Gaps = 56/429 (13%)

Query: 53  GHDFILHAVQKGAG-----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           GH      ++  A       V      VAS     IPV    ++L  L +L         
Sbjct: 59  GH--APENIENAAVVVTSTAVKRTNPEVASALENRIPVVRRAEMLAELMRLKS------- 109

Query: 108 ATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              +A+ G+ GKTTT  M+   L    I  T       N  I           D ++ + 
Sbjct: 110 --TVAVAGTHGKTTTTSMIAALLDCGDIDPTV-----INGGIIEQYGSNARLGDSEWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   IAV+T I P HL ++   + +  A  +    +   G   L
Sbjct: 163 EADESDGSFLR-----LDGTIAVVTNIDPEHLDHYGDFDGVKRAFLDFIHNVPFYGAAIL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             D    + +  +      + + ++G S  AD      +     +  +V ++ +  E   
Sbjct: 218 CIDHPEVQAVIGQVR---DRRVMTYGFSLQADICGVNIRPEGGGNVFDVIVRQRGEEDRR 274

Query: 285 -----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  QN L  + +   +    +   +    F    G  +R+      G  
Sbjct: 275 IADVHLPMPGRHNVQNALAAIAVSIEMGCSDEVIQRGFESFG---GVRRRFTKVGEVGGA 331

Query: 340 TLIDESYNANPASMKAAISVLSQI--SPHGEGRRIAV--------LGDMCEMGELSQSFH 389
           T+ID+ Y  +P  + A +    +   S    GR IAV        L D+  M +    F+
Sbjct: 332 TIIDD-YGHHPVEIAAVLGAAQEAVSSSDKGGRVIAVAQPHRYTRLRDL--MDDFQSCFN 388

Query: 390 -IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDV 446
             D   V  +Y      + G    AL   L    H H +       L   +   + +GDV
Sbjct: 389 DADAVYVTPVYEAGEDPIDGIDAEALVAGLKSRGHRHAATIADPQALARTLAGEIEEGDV 448

Query: 447 VVVKSSNSC 455
           VV   +   
Sbjct: 449 VVCLGAGDI 457


>gi|87199156|ref|YP_496413.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|109892716|sp|Q2G994|MURC_NOVAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87134837|gb|ABD25579.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 474

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 132/391 (33%), Gaps = 38/391 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV    ++L  L +L            +A+ G+ GKTTT  M+   L +       
Sbjct: 89  ENRIPVVRRAEMLAELMRLKS---------TVAVAGTHGKTTTTSMVACLLDAGGIDPTV 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           I   N  I           D D+ + E   S    +R     +   +AV+T I P HL +
Sbjct: 140 I---NGGIINSYGSNARLGDSDWMVVEADESDGSFLR-----LDGTLAVVTNIDPEHLDH 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           +   E + SA  E  E +   G   L  D    + +  K      + + ++G S  AD +
Sbjct: 192 YGSFERVKSAFVEFIENVPFYGAAMLCIDHPEVQAIIPKVR---DRRVVTYGFSAQADVR 248

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                     +     L+ +               G H  QN L  + +   +    +  
Sbjct: 249 GEGVTPIPGGNRFTAVLRQRDGSFRRIEGIELPMPGRHNVQNALAAVAVAVEMGVSDELI 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
               + F   + R  +            I + Y  +P  ++A   VL+      +GR IA
Sbjct: 309 RGGFAKFGGVKRRFTKVGEVDIGSGAVTIIDDYGHHPVEIRA---VLAAAREGVQGRVIA 365

Query: 374 VL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--V 424
           V+       + +    F       D+     +Y      + G    A+ + +    H   
Sbjct: 366 VVQPHRFTRLRDHMDEFQGAFNDADVVYAAPVYPAGEQPIEGVDSAAMVEGIKARGHRSA 425

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           H +   D L   + +++  GD+VV   +   
Sbjct: 426 HLTTGADELAKELAATVQAGDMVVCLGAGDI 456


>gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-671]
          Length = 472

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 166/478 (34%), Gaps = 51/478 (10%)

Query: 10  LLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           L   I     G   VP   V G+++ ++ + P + F A+ G    G  +   A+++GA  
Sbjct: 20  LAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERGAVA 79

Query: 68  VVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
           V+ +   VA +G+L  S+PV    D  G L  LA         + T++ +TG+ GKTTT 
Sbjct: 80  VLTDAGGVAEMGALGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSGKTTTT 139

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFEL 167
            ++  AL +   T   IG+    I      + +                   VD  + E+
Sbjct: 140 YLIESALRAAGHTAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVDTVVMEV 199

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFL 225
               L   R      R  +   T ++  HL     + +   AKA +F+         + +
Sbjct: 200 SSHALTLGR--VDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRARRVVV 257

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWME-VQLQGKSMEV 283
             DD           A     I    + + A ++        +       +   G   ++
Sbjct: 258 CVDDDAG----RAMAARAGDAITVSAEGRPAHWRATDVAPMGAAGQRFTAIDPAGARHQL 313

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G++   N L+ L I+  +    + A    +        G+       Q F  L+D
Sbjct: 314 GVRLPGHYNVANCLVALAILDAVGVSPEQA---STGLLQARVPGRMEEIDAGQDFLALVD 370

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNIS 402
             Y   P +++A ++ L++     + R   V G   E     ++      AE+  L  ++
Sbjct: 371 --YAHKPGALRAVLTTLAR----PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVT 424

Query: 403 HVWLSGFHVLA-----LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                G    +     L  A          E  D         +    GDVV++  K 
Sbjct: 425 DDNPRGEDPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKG 482


>gi|218886345|ref|YP_002435666.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757299|gb|ACL08198.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 546

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 132/364 (36%), Gaps = 22/364 (6%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDF 162
           LR   T+IA+TGS GKT+ K +L   L     T    GS N  +G+   +  R+     F
Sbjct: 173 LRLAPTVIAVTGSYGKTSVKHILAHVLGCYHPTLMTPGSINTPMGISRIIRERLTDAHRF 232

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTG 221
            I E+G   +G I  L  L  P  A+IT + PAH   F  +  +  AK E+    + + G
Sbjct: 233 FIAEMGAYGIGSIERLCRLAPPDFAIITNVGPAHYERFKDLATVVRAKFELAHATVARGG 292

Query: 222 TIFLNY-----DDSF-------FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            + L       D +          +L+     +                ++    Q    
Sbjct: 293 RVVLPAALLAYDHARDFAAANAGAVLRCAGADVNADAGAGGAGVAEPSVRVLDAGQDLSG 352

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +  Q +  EV     G H   N+ +       +  +    +   S          R
Sbjct: 353 IHARLLYQEQEYEVRAPIHGMHHVDNVALAFAAACGVGVEPQRVV---SALRSLPQIAHR 409

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      LID++YN+NP+   +A+ +L  +      R + V   M E+G L  S H
Sbjct: 410 LEVKPQPDGSVLIDDAYNSNPSGFASALDLL-DLYRKSGQRGVLVTPGMVELGTLHDSAH 468

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDGD 445
            +L    +      + ++   +  L +A   +      V           ++ +++  GD
Sbjct: 469 AELGARAAACADVLLAVAPARIPTLVEAFRAAAGPDQLVVECADFAAARAWLAANIGPGD 528

Query: 446 VVVV 449
            V++
Sbjct: 529 AVLL 532


>gi|50122736|ref|YP_051903.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|59798236|sp|Q6D0I4|MURC_ERWCT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49613262|emb|CAG76713.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 486

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 143/409 (34%), Gaps = 43/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAITADNPEIVAAHDARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VTSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  +      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMCIDDAVIRELLPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  ++Q   Q    ++ + K+ + V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSDDADVRVAGYRQTGAQGHFTLERKDKTLLNVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D +  ++AL  F     R              Q    ++ + Y  +P  + A I 
Sbjct: 305 TDEGIDDEAILRALERFQGTSRRFDFLGEYPLELVNGQSGTAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALK 415
                 P  + R + +          ++  + D A VLS  ++     V+ +G   +   
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGESPIPGA 420

Query: 416 D--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           D  +L R+I             MD L   +  +L   D+++V+ + + G
Sbjct: 421 DSRSLCRTIRGRGKIDPILVTDMDTLPELLSQALRGEDLILVQGAGNIG 469


>gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 465

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 147/373 (39%), Gaps = 41/373 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GKTTT  ML++ L        CI      +    + AR+  D ++ + E   S
Sbjct: 108 IAITGAHGKTTTTSMLSLILEEASADPTCI--IGGELPNFGSNARV-GDSEYVVAEACES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +R+      P IAVIT I   HL ++    +++  +  +  E ++ +G +F+  + 
Sbjct: 165 DHSFLRY-----SPQIAVITNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFIYSEC 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI 288
            + + L         K   +FG S++ADF+    K     +   ++     S +V     
Sbjct: 220 EYHDYLLE----GMSKNCKTFGFSQDADFRATDLKLNKGTTEFTIESDLADSFKVELMVP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    +   L        +AL  F    G  +R+         T++D+ Y  
Sbjct: 276 GEHNILNALAAASVALDLKISPTAIKRALQKFT---GAKRRFMEIGQLQGATIVDD-YAH 331

Query: 349 NPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVLS 397
           +P  +KA +    +           PH   R    + D     E + +   H   A    
Sbjct: 332 HPTEIKATLKTAQEQSDNKVIAIFQPHRFTRTQYFMDDFASSFEEADTVILHKVFA---- 387

Query: 398 LYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                   + G +   LKD +  ++    V+ ++ M+ +   + + +  GD V+   +  
Sbjct: 388 ---AGEDEIPGANSKNLKDKIKENVPGLEVYVTDDMEDIAEIVSNIVDKGDYVITMGAGD 444

Query: 455 CGFYRLINLLLEE 467
              +++ + L++E
Sbjct: 445 I--WKVAHWLVDE 455


>gi|209963945|ref|YP_002296860.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum centenum SW]
 gi|226706326|sp|B6IRG1|MURC_RHOCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|209957411|gb|ACI98047.1| UDP-N-acetylmuramate--alanine ligase [Rhodospirillum centenum SW]
          Length = 482

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 151/426 (35%), Gaps = 55/426 (12%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   G   VVV       +   V +  +  +PV    ++L  L +L       
Sbjct: 59  GHR----AENLGEAAVVVISSAVRTDNPEVVAARAALVPVVRRAEMLAELMRL------- 107

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  M+   L             N  I   L         D+ + 
Sbjct: 108 --KWSVAVAGTHGKTTTTSMVAALLDGAGFD---PTIINGGIINALGTNARLGSGDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S           +   IAV+T + P HL  +   E+   A     E +   G   L
Sbjct: 163 EADES-----DGTFTKLPATIAVVTNMDPEHLDFYGTFEKEREAFDRFVENIPFYGFAAL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL------QGK 279
             D    + L A++     + I ++G +  AD +    +     ++ +VQ+      + +
Sbjct: 218 CTDHPEVQALVARA----DRRIVTYGFNPQADVRAVNVEGDHRGAFYDVQVSERVTGEAR 273

Query: 280 SMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           ++E VH    G H  QN L  + +   +    +    + + F   +   +R+        
Sbjct: 274 TIERVHLPMYGLHNVQNSLAAIAVAINMGIADEQIRASFARFSGVK---RRFTRTGESNG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HID 391
             +ID+ Y  +P  ++A   VL      G GR IAV+       +  L + F       D
Sbjct: 331 VVVIDD-YGHHPVEIQA---VLKAARMAGSGRTIAVVQPHRYSRLSSLFEEFCTCFNDAD 386

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
              V  +Y      + G    AL + L    H  V    + + L   ++     GD+VV 
Sbjct: 387 AVIVADVYAAGEQPVEGASKEALVEGLRTHGHRNVQALPSPEALAGIVRELAQPGDMVVC 446

Query: 450 KSSNSC 455
             + S 
Sbjct: 447 LGAGSI 452


>gi|262195225|ref|YP_003266434.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
 gi|262078572|gb|ACY14541.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
          Length = 472

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 153/414 (36%), Gaps = 42/414 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +  +  IPV    ++LG L ++          T +A+ GS GKTTT  M+   L
Sbjct: 78  YNPEVEAARARMIPVIPRAEMLGELMRM---------KTGLAVAGSHGKTTTTTMIASVL 128

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +      A IG   N +G+         +  +G  E  ++   E       + P  AV+
Sbjct: 129 MAAGMDPTAVIGGRVNALGL--------ANARWGKSEYLVAEADESDGSFLTLAPTFAVV 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P HL ++  ++ +  A       L   G   +  D++  + +  +      K   +
Sbjct: 181 TNLDPEHLDHYGSVDNLHRAFINFLNRLPFYGLAAVCLDNAGVQAILPQIQ----KRFVT 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G +  A ++ R  +     +      + + + E+     G H   N L  L I   L  
Sbjct: 237 YGMASQATYRARNIRPEGLVTRYVAWRRAEELGEIHLPMPGQHNVLNSLAVLAICDALDV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   KA       EG  +R+         T++D+ +  +PA +++    L+       
Sbjct: 297 PFEVTAKA---LQSFEGIQRRFTVRGEVAGITVVDD-FGHHPAEVRS---TLAGARSAFP 349

Query: 369 GRRIAVLGDMCEMG-------ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            RRI                 E ++SF+  D   +  +++     + G    AL  A+  
Sbjct: 350 SRRIIAAFQPHRYTRTRDQFQEFARSFYDADKVIITDVFSAGEAPIEGATAEALAKAVST 409

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           S H  V +      +   +   + +GD+V+   +         N L+E+  A +
Sbjct: 410 SGHGDVTHIARRADVAEHLSEIVREGDLVITLGAGDIQLS--CNELIEKLEATR 461


>gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
 gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
          Length = 471

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|270263960|ref|ZP_06192228.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042153|gb|EFA15249.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
          Length = 491

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 143/418 (34%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD ++  ++Q   Q    +  Q K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSEDADVRIESYRQVGPQGHFTLSRQDKPLMTVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               D +  ++AL+ F     R              +    ++ + Y  +P  +   +  
Sbjct: 306 EEGIDDEDILRALAGFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDVTLKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                P  + R + +          ++  + D A VLS  ++     V+ +G   +   D
Sbjct: 366 ARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGETAIPGAD 421

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L R+I              D +   +   L   D+V+V+ + + G  ++   L E
Sbjct: 422 SRSLCRTIRSRGKLDPILVSDADIVPETLAQLLQAEDLVLVQGAGNVG--KIARKLAE 477


>gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 495

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 165/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEARDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +          + +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVDYHDRGATIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFSAAGKATVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----D 407

Query: 403 HVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
            V ++  +         + D L   +       M+G    + +++    D DVV++  K 
Sbjct: 408 IVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
 gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 160/475 (33%), Gaps = 48/475 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P      +  D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+   + + A+            D L                  I +TG+ GKT+  
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPALDQLAGEIASGWYGDPSDSMLAIGVTGTNGKTSCT 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FEL 167
           + +  AL+++ +  A IG+  + +   L               +LA++       +  E+
Sbjct: 126 QWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEV 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R   +     IAV T +   HL      +   +AKA++F          +N 
Sbjct: 186 SSHALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVVNR 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           DD+    L  K         Y  G ++  D          +  +  +   ++      +V
Sbjct: 243 DDAAGRRLLEKLAGRVRTIAYGIGDAQAPDADRELVALDVRATATGTAFHLRSSWGDADV 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  LG +       D A+  ++      GR +R      Q    L+ 
Sbjct: 303 EVGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRL-GGRLQNDEPLVV 361

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++  +  L  I+    GR + + G   +     +     +AE L+      
Sbjct: 362 IDYAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGVIAERLA----DE 417

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           V ++  +  +         +   +    H    E     +   ++ +  +  VV+
Sbjct: 418 VVVTSDNPRSEDPQRIIDQVIAGMTAPDHARRIEDRASAILQAVRGAAREDVVVL 472


>gi|282600178|ref|ZP_05973287.2| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
 gi|282566125|gb|EFB71660.1| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
          Length = 472

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 150/421 (35%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            + ++   + +   L IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 72  AISMDNPEIQAAKELRIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 123 SGIYAQAGLD---PTFVNGGLVKSAGTHARLGSSRYLIAEADESDASFLH-----LQPLV 174

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       E +          L   G   +  DD     L  K      +
Sbjct: 175 AVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGRAVMCIDDPVIRSLLPKI----GR 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD ++ K+ Q   Q +  +  +G   + VV +  G H A N    + + +
Sbjct: 231 YITTYGFSEDADVRITKYTQKGNQGFFTIAREGMPELTVVLNAPGRHNALNATAAVAVAT 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               D    + AL  F    G G+R+        R    +    ++ + Y  +P  + A 
Sbjct: 291 EEGIDDLHILSALVEFQ---GTGRRFDFLGNYALRNVNGKEGEVMLVDDYGHHPTEVDAT 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA 413
           I       P  + R + +          ++  + D A VL   ++     V+ +G   + 
Sbjct: 348 IKAARAGWP--DKRIVMIF--QPHRYTRTRDLYDDFANVLGQVDVLLMLEVYSAGEKPVP 403

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I         +    + +   +   L   D+++V+ + + G  ++   L 
Sbjct: 404 GADSRSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDGNDLILVQGAGNIG--KIAKSLA 461

Query: 466 E 466
           E
Sbjct: 462 E 462


>gi|317484864|ref|ZP_07943756.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316923910|gb|EFV45104.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 143/404 (35%), Gaps = 46/404 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +     IPV    ++L  L +L          T IAI G+ GKT+T  +
Sbjct: 73  SAVAEDNPEVVAARQKGIPVIPRAEMLAELMRLR---------TGIAIAGTHGKTSTTSL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 +         S +  + +   +     +   G  E  ++   E       + P 
Sbjct: 124 TAAIFDAA--------SLDPTVIIGGRINAYGANARLGQGEYLIAEADESDGSFLCLLPI 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T +   HL ++   E I  A       +   G   +  DD   E L  +      +
Sbjct: 176 INVVTNVDRDHLDHYGNQEAIDEAFVSFMNQIPFYGLNVVCGDDPGVERLLPRVK----R 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G       +    + C   +  +V ++G+ + EV     G H   N L  +G+  
Sbjct: 232 PVVTYGFGSGNHIRAEVLE-CGVINRFKVFIKGEELGEVTLRQPGRHNILNALAAIGVAL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI------- 357
               +    I+ L+ F    G G+R+     +    ++D+ Y  +P  + A +       
Sbjct: 291 DAGIEPHFCIEGLARFG---GVGRRFEHKGEKNDILVVDD-YGHHPVEIAATLATARTAY 346

Query: 358 ---SVLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               V+    PH   R  A+ G+ C  +G + +        +  +Y  S   + G +   
Sbjct: 347 PDRRVVVAFQPHRFSRTQALFGEFCHVLGTVDKLL------LTEIYPASEKPIPGVNGQN 400

Query: 414 LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L   + +     V Y +  D +   +   L  GD+ +   + + 
Sbjct: 401 LAQGIRQVSDADVSYFQNFDEMVAALPDILKPGDLFLTIGAGNV 444


>gi|303327347|ref|ZP_07357788.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862287|gb|EFL85220.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 457

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 149/412 (36%), Gaps = 44/412 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +      +I +    ++L  L +L            IAI G+ GKTTT  + 
Sbjct: 73  AIGDDNPELVEGRRRNIAIIPRAEMLAELMRLRQG---------IAIAGTHGKTTTTSLT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                +       I      IG  L +      +  G + +  +   +  FL  L  P I
Sbjct: 124 ASIFDTAGLDPTVI------IGGRLNVYGTNAHLGHGDYLIAEADESDGSFLCLL--PII 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   HL ++   E I +A  +    +   G   +  DD     L  +      + 
Sbjct: 176 NVVTNVDEDHLDHYKSREAIDAAFVQFMNNVPFYGINVVCGDDPGVRALLPRVK----RP 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G + +   +    +    +S  EV  + + + EV     G H   N L  +G    
Sbjct: 232 VLTYGFAADNHLRAVPLE-SGLRSRFEVWREDEKLGEVSLPQPGRHNILNALAAIGAAME 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L  F     R +       +   T++D+ Y  +PA + A ++   Q+ P
Sbjct: 291 ADIAFERCARGLGGFGGVGRRFE---FKGEKDGVTVVDD-YGHHPAEIAATLATARQVFP 346

Query: 366 HGEGRRIAVLGD-------MCEMGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKD 416
              GRRI                GE  + F   + EVL   +Y  S   + G    +L  
Sbjct: 347 ---GRRIVAAFQPHRFSRTQAHFGEFCKVF-DQVDEVLLTEIYAASEKPIPGVSGQSLAQ 402

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  +  V Y +T+D L   +   L  GDV++   + S    RL    LE
Sbjct: 403 GVQQVSTTPVRYFQTLDALAQALPEVLRPGDVLLTLGAGSI--TRLGPAWLE 452


>gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           M50/1]
          Length = 459

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 159/427 (37%), Gaps = 47/427 (11%)

Query: 42  AFFAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
            F+  K  +  DG D I++        +  +    A+    SIP+    ++LG +     
Sbjct: 57  IFYGQKAENLTDGIDLIVYT-----AAIREDNPEYAAAKERSIPMLSRAELLGQI----- 106

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
              + +    IA+ G+ GKTTT  M++  L + K         +  I V   L  +  ++
Sbjct: 107 ---MDNYNNSIAVAGTHGKTTTTSMISQILLAAKA--------DPTISVGGILKAIEGNI 155

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  ++ +S   E         P  +VI  +   HL  F  I++I ++  +     +K 
Sbjct: 156 KVGKSDIFLSEACEYTNSFLHFYPRYSVILNVEAEHLDFFKDIQDIRNSFRKFAGNTKKD 215

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQG 278
           G I +N +   +  L +         + +FG + + D+             S+  +    
Sbjct: 216 GAIIINGEIENYTELTSGL----DPQVITFGLNDSCDYYPSDITFDKTACASFTAMHHGT 271

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             M+V  H  G H   N L  + +   L    D  +  LS F    G  +R++       
Sbjct: 272 PVMDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFG---GADRRFQYKGCVDG 328

Query: 339 FTLIDESYNANPASMKAAISVLS---------QISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  ++A ++               PH   R  A L D  ++  ++    
Sbjct: 329 VTIIDD-YAHHPTEIRATLTAAKNYPHKRLVLAFQPHTYSRTKAFLDDFADVLSMA---- 383

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            D+  +  +Y        G     +   L  +    +Y  + + +  F+  + ++GD+++
Sbjct: 384 -DVVVLADIYAAREKNTYGISSRDILAKLKEKGTECYYFPSFEEIEKFLLKNCINGDLLI 442

Query: 449 VKSSNSC 455
              +   
Sbjct: 443 TMGAGDI 449


>gi|253681282|ref|ZP_04862080.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
 gi|253562520|gb|EES91971.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
          Length = 458

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 163/433 (37%), Gaps = 49/433 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-----ARLRSKATI-- 110
            H  +KGA + + +         L +    + D    L +          R      +  
Sbjct: 49  EHLREKGAEIYIGHNKDNIKNVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQ 108

Query: 111 -----IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                IAI+G+ GKTTT  ML+   LS+         + +  I V   L  +  +V  G 
Sbjct: 109 GHKYNIAISGTHGKTTTTSMLSHITLSA---------NLDPTILVGGNLDVINGNVRVGN 159

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E +       P+I +I  I   HL  +  I +I +   +  + + K G + 
Sbjct: 160 SDYFVTEACEYKASFLKFYPYIGIILNIEADHLDFYKDINDIQNTFLKFAKLIPKDGFLI 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEV 283
           +N DD     +  +        I +FG + N + + +  +  + +   +V     K   +
Sbjct: 220 VNADDERCLDISKEVDC----NIITFGIN-NGEVRAKNIEFNNGRPTFDVYRNNTKLFSL 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H   + L ++     L  D ++ I+ LS F    G  +R+         T++D
Sbjct: 275 TLNVPGNHNILDALASISASLSLKVDTNSIIEGLSTF---YGAHRRFEIKGKLNGITVVD 331

Query: 344 ESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + Y  +P  +KAA++               PH   R I++  D  +       F+ D   
Sbjct: 332 D-YAHHPTEIKAALNAAKNFPHNKIFCIFQPHTYSRTISLFEDFADSF-----FNADTLV 385

Query: 395 VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +  +Y          +   L D +  + ++     + + +  F++  L +GD+++   + 
Sbjct: 386 LADIYAAREKDTGIVNSDILGDKIREKGVNCKNLHSFEDITKFLRQELKEGDLLITVGAG 445

Query: 454 SCGFYRLINLLLE 466
               Y++  + LE
Sbjct: 446 DI--YKVGEMFLE 456


>gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 511

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 176/477 (36%), Gaps = 71/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           F +L+  + G      P+   N     +S DSR++     FF  KG  +D   ++  A  
Sbjct: 18  FKELI--VAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAAN 73

Query: 63  KGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           +GA + +   D  A +       +P   V D+  A+  ++ A         T+I  TG+ 
Sbjct: 74  QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTK 133

Query: 118 GKTTTKEMLTIALS-SIKKTYACIGSYNNHIGV------------PLTLARMPVDV---D 161
           GKTT+       ++ ++ K  A + S +  +               L L RM  +     
Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S     +     +   I V   I+P H+S       E+  + K+EI +    
Sbjct: 194 MKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQG 278
              + +N + S ++ L  K+H LG K + SFG  ++ AD+Q R      E  +  V    
Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR----LGEHGYFTVTTAN 305

Query: 279 KSM-----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++     +      G     N L  L + +   A V    +A        G   R    
Sbjct: 306 PALPKLDGDFRVMMPGDFNVANALAALTV-TAQVAPVSEDFRAGLAETTVPG---RMEFI 361

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            ++       + Y  N  S+ A+ + +       +GR I V+G     G  ++S   D+ 
Sbjct: 362 KDKQGVVACVD-YAHNYLSLTASFNFMKH--EFKDGRLIVVIGA---AGGKAESRRKDIG 415

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVV 449
             LS Y      L+                 ++ E    +   I+ ++ + D+ V+V
Sbjct: 416 RALSQY-ADVAILTSED--------------NFFEDPHQIAADIKENIDNPDLEVIV 457


>gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
 gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
          Length = 607

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 150/457 (32%), Gaps = 61/457 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
              +QG   G      V GIS+DSR + PQ+ + A+ G    G  F   A++ GA  ++ 
Sbjct: 75  ASGVQGSESG--ESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILT 132

Query: 71  NTDMVASIGSLSIPVFGVDDVLGA---LNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +      +G   +PV   +++      L  L   +         A+TG+ GKTT+  ML 
Sbjct: 133 DAAGAQLLGEAPVPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLE 192

Query: 128 IALSS-IKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMS 170
               + +      IG+    I      ++M                   V     E+   
Sbjct: 193 SVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSH 252

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R     V+  +A  T +   HL     +E    +KA++F          +  DD 
Sbjct: 253 AIDYHR--VDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLFTPERAE-LAVITADDE 309

Query: 231 FFELL-KAKSHALGIKTIYSFGKSKN-------ADFQLRKW---KQCSEQSWMEVQLQ-- 277
           + E +  A    +G + ++    ++        A+F  R W   K   E       +   
Sbjct: 310 WGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVDNG 369

Query: 278 -GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD------TAIKALSVFHPKEGRGKRY 330
            G+S+E            N  +   +  + T   +            ++     GR +  
Sbjct: 370 AGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLI 429

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A +          +  NP  +  A+     +   G+G+ + V G     GE  Q    
Sbjct: 430 SLAPHA------IVDFAHNPDGLTRALEA---MDRPGDGKVMIVFGA---TGERDQLKRP 477

Query: 391 DLAEVLSLYNISHVWL----SGFHVLALKDALPRSIH 423
            +  + + Y    V       G     ++ A+     
Sbjct: 478 IMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQ 514


>gi|295098595|emb|CBK87685.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 491

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  +KQ   Q    +  Q K +  V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYKQIGAQGHFTLARQDKDLLHVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKPGSAMLVDDYGHHPTEVDATIKAARAGWPEKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR 420
             + +          ++  + D A VLS          Y      + G    +L   +  
Sbjct: 375 -LVMIF--QPHRYTRTRDLYDDFANVLSQVDTLLMLDVYAAGETPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V          +   +   L   D+++++ + + G  ++   L E
Sbjct: 432 RGKVDPILVPDPAQVAEMLAPVLTGNDLILIQGAGNIG--KIARTLAE 477


>gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 527

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 139/391 (35%), Gaps = 37/391 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +L   +             V G+++ ++ + P + F A+ G    G DF   AV++GA
Sbjct: 37  ASELAATVDARLTSPAGAPVLVTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGA 96

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
             V+ + D  +      +PV    D   AL  L+         +  +  +TG+ GKTTT 
Sbjct: 97  VAVLTDEDGASRPELRDVPVLVHRDPRAALGALSARVYGEPAQRVALWGVTGTSGKTTTS 156

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFGIFEL 167
            M+   L +  +    +G+    I                   L    +   V   + E+
Sbjct: 157 YMIESCLRAEGRVTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEV 216

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R         +   T ++  HL     +E+   AKAE+F+G  +     +  
Sbjct: 217 SSHALRLGR--VGGAGFAVGAFTNLSQDHLDFHPDMEDYFQAKAELFDG--RARREVVCV 272

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVH 285
           D  +   L       G  T+ +      A +     +     EQ++      G  + V  
Sbjct: 273 DGEWGRRLVK----PGTVTVSATAPVGGATWTASGVRVSATGEQTFTAHGPDGLELAVAL 328

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L+ +G +       +  ++        +  G+  R  + Q F  ++D  
Sbjct: 329 RLPGDFNVANALLAIGCLHASGVGAEAIVRG---LAEVQVPGRMQRVDVGQDFTAVVD-- 383

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           Y+  PA++  A+  +   +    GR I VLG
Sbjct: 384 YSHKPAAVVLALDAVRARAT---GRVITVLG 411


>gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 85-1]
          Length = 471

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437]
          Length = 466

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 165/447 (36%), Gaps = 51/447 (11%)

Query: 44  FAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            A +G     GH      + +GA  VV +T +      L       +  +  L++  + A
Sbjct: 48  LATRGAEIHIGH---QAVLVEGADRVVYSTSIPRDNVELKA---AREKGMTVLHRSQMLA 101

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVD 161
            L +    IA+ G+ GKTTT  M+   +          IG     +G        P    
Sbjct: 102 ALLNDKQGIAVAGAHGKTTTSSMIAQTMEEGGADPTYVIGGEVVSLGSNAKAGSSP---- 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
           + + E   S    + +      P IAV+T I P HL N+    E++  A       +++ 
Sbjct: 158 YVVAEADESDGTFLEYF-----PRIAVVTNIEPDHLENYEGSFEKLKEAYRRFLSQVKED 212

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   L +DD +   +     A     + ++   + AD+     +Q   ++   V  QG  
Sbjct: 213 GVAILGWDDPYLPEIAGACRA----RVITYALDREADYTATHLQQVLNRTQFTVNYQGTP 268

Query: 281 M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + +V  H  G H   N L  + +        DT  + LS F    G  +R++        
Sbjct: 269 LGDVTIHVPGRHNVANALAAVVVCLEAGLPFDTIAEGLSRF---RGAKRRFQVIGEADGI 325

Query: 340 TLIDESYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            ++D+ Y  +P  ++A I+ L            P    R   ++       E S++F   
Sbjct: 326 LVVDD-YAHHPTEIRATINGLKALNRRIFGVFQPQRYSRTHLLME------EFSRAFTE- 377

Query: 392 LAEVLSLYNI----SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD 445
            A+ L + +I        ++G     L   +  +   +  Y  T + + L +      GD
Sbjct: 378 -ADELVITDIYSPPGEPPIAGVTSERLAQMVRENSNPNTVYRATKEDVELHLLQHARPGD 436

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           +V+   +     +R+ + L+    A Q
Sbjct: 437 LVITMGAGDI--WRVAHNLVPALKARQ 461


>gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
 gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
          Length = 490

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 159/468 (33%), Gaps = 47/468 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G   V+   +  A 
Sbjct: 8   WVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAE 67

Query: 78  IGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
            G +     +PV  +  +   L+ LA     +   K  +I +TG+ GKTTT ++L     
Sbjct: 68  DGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLLAQWAQ 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRF 177
            + +T A +G+  N +   L+ A                 VD    +  + +S  G ++ 
Sbjct: 128 LLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLVQH 187

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +    A  T ++  HL     +    +AK  +F    + G   +N DD        
Sbjct: 188 RVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE-HQVGQAIINADDEVGRRWLE 246

Query: 238 KSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           K     +                 +  K       + +          +    +G     
Sbjct: 247 KLPD-AVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +D      S   P  G   R       G  T++ + Y   P +++
Sbjct: 306 NLLVALATLLSLDYPLDALTATASQLQPVTG---RMEVFSAPGKPTVVVD-YAHTPDALE 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
            A   L+    H +GR   + G   +  +  +     +AE  +      V ++  +  + 
Sbjct: 362 KA---LAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFA----DVVVITDDNPRSE 414

Query: 414 --------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   L  +                      GD+V+V  K 
Sbjct: 415 DPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 462


>gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
          Length = 510

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 155/465 (33%), Gaps = 51/465 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            + +DSR + P + F A+ G   DG  FI  A  +GA  V+   +         +P   V
Sbjct: 21  HLRLDSREVKPGDIFCAVPGEKVDGRTFIRVAAARGAAGVIYEAETSQRPEHYPLPAKPV 80

Query: 89  DDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           + +   L ++A        A +  +A+TG+ GKTTT       L+++      IG+    
Sbjct: 81  EHLRERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGTVGVF 140

Query: 147 IGVPLT---------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                                + +   +     F +  S +G  +         + V T 
Sbjct: 141 FAGRQIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVGVFTN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-- 249
           ++  HL     +E    AK  +F          LN  D++       +   G +   +  
Sbjct: 201 LSRDHLDYHQTMEAYGEAKGLLFAW-PGLKAAVLNASDAWSRKYADAAQKNGSEIWVTGL 259

Query: 250 ------FGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 FG++  A    + ++ +         +    +   V  H +G     N L    
Sbjct: 260 EGEAASFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNALEAAA 319

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +     ++  ++AL    P  GR + +          L    +   P +++ AI  L 
Sbjct: 320 AAAACGHPIEKVVRALEALTPPPGRMQIFES----DGMPLGVVDFGHTPDALEKAIECLI 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
             +    GR   V G     G+        + E+ +  +   +  S      +  A+ DA
Sbjct: 376 PNARARGGRLWTVFGC---GGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDA 432

Query: 418 LPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + + +              +  + +   + ++    D+++V  K 
Sbjct: 433 IMQGVQAVPGADQRTMAVVDRREAIHRAVFAA-DAKDIILVAGKG 476


>gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/504 (18%), Positives = 174/504 (34%), Gaps = 75/504 (14%)

Query: 4   LWTFHDLLQ-----------AIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKG 48
           + T  ++              I G     VP+      V  +S DSR ++    FF  KG
Sbjct: 1   MLTLKEITDLLKENGLYKEIIIDGDWYYTVPEKAARAEVTDLSYDSRKVSDGTLFFC-KG 59

Query: 49  PHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAAR 103
             ++  +++  A+++GA   +   V TD +      + P   V DV  A+          
Sbjct: 60  LKFN-PEYLASAIKEGATAAISELVYTDKLDQEAQST-PQIIVTDVQKAMAVIARHFYGC 117

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS-IKKTYACIGSYNNHIGV------------P 150
              K  +I  TG+ GKTT+       L+           S +  +               
Sbjct: 118 PDEKLELIGFTGTKGKTTSVYFTRHILAHEFGPVVGQFSSIDECVDGKNFIEAHLTTPES 177

Query: 151 LTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEE 205
           L L RM  +          + +S     +   + +  +I V   I+P H+S       ++
Sbjct: 178 LDLFRMMKEAVDNGMKYLAMEVSSQAYKKSRVYGLHFNIGVFLNISPDHISLVEHPTFDD 237

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWK 264
               K++I      + T+ LN    ++ELL  K+H LG K + +FG  + +AD++     
Sbjct: 238 YLWCKSQIIVN---SDTVILNRYMDYYELLAQKAHELG-KKLITFGSDESDADYRY---- 289

Query: 265 QCSEQSWMEVQLQGKSM-----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              +  + +V     ++     E      G+    N L  + + + L  D     +    
Sbjct: 290 HGKDHGYFDVSTHNDNLPEVTGEFRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQG--- 346

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               +  G+      N G    +D  Y  N  S+  +   +     + +GR I V+G   
Sbjct: 347 LKETKVPGRMEFLKNNAGMVACVD--YAHNYLSLSESFKFMKH--EYPDGRLIVVIGA-- 400

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI---HVHYSETMD- 431
             G  ++S   D+   LS Y    +  S          + + +   I   +V     +D 
Sbjct: 401 -AGGKAESRRKDVGRALSEYADVAILTSEDNFFEDPHHIDETIKEHITNPNVKVIINVDR 459

Query: 432 -GLFLFIQSSLVDGDVVVVKSSNS 454
                        GD  +  ++  
Sbjct: 460 VAAIKQAFEMAKPGDA-MFMAAKG 482


>gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
 gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
          Length = 503

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 152/481 (31%), Gaps = 46/481 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T H LL+A+       +    +  I+ DSR ++    F  + G   DG  F   A+  GA
Sbjct: 4   TLHSLLRAVGLPWPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWPRALADGA 63

Query: 66  GLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTT 121
              V+     A        PV  V + +        AA   R  S+ T+I +TG+ GKTT
Sbjct: 64  AAAVIGPAAAAVQPPGPEDPVLVVPEPVAQWIGELAAAFWQRPSSRMTLIGVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIF 165
           T  ++    +   +  A  G+  N        A                           
Sbjct: 124 TTHLIEHLAAQAGRPAALFGTLVNRWPGHSITATHTTAFADRLQAQLAEAVAGGTQVAAM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGT- 222
           E+    L + R      R   AV T ++  HL     ++    AKA +F    L   G  
Sbjct: 184 EVSSHALEQQR--VAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLFAEPLLASDGVR 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD +   L  +      +   S    + A+  +      S      +        
Sbjct: 242 AVVTMDDPWGRQLAERLGDRCWRC--SLEPDQEAELTMTDLVMRSSGVEGRLITPKGEGR 299

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTL 341
                +G     N++  + ++      +   +K L  F    GR +R   A         
Sbjct: 300 FASPLVGRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVVVASAAAAQLPA 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P  +K A+       P  EGR I V G     G+  +     +A + +    
Sbjct: 360 VLVDYAHTPDGLKNALEACR---PFVEGRLICVFGC---GGDRDRGKRPQMASIAAKL-A 412

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +            + + LP S                 +    GD+V++  K
Sbjct: 413 DRVVVTSDNPRTEDPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEAKPGDLVLIAGK 472

Query: 451 S 451
            
Sbjct: 473 G 473


>gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 471

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV++  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 443


>gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
 gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
          Length = 495

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 167/481 (34%), Gaps = 53/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +LL       +   P   +  +++DSR+ A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRELL----APWVPNAPGRVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGK 119
             VV   +  A  G +     +PV  +  +   L+ LA     +      +  +TG+ GK
Sbjct: 61  AAVVAQAEGEAEEGEIRELHGVPVIYLHRLQERLSALAGRFYQQPLHALRLTGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDV------------DFG 163
           TTT  +L      + +T A +G+  N    HI         P++V             F 
Sbjct: 121 TTTTHLLAQWAQLLGETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQRQGATFA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G ++    ++    AV T ++  HL     + +  +AK  +F  L+  G  
Sbjct: 181 AMEVSSH--GLVQHRVSILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELD-VGQR 237

Query: 224 FLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD+       K   A+ +    +    +  D     + +  +  + +  +      
Sbjct: 238 IINADDATGRRWLQKLPQAIAVAVSGTLPPERQGDWLCAGEVRYHARGADIPFRSSWGEG 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    IG     N+L+ L  +  L   +   + + S      G   R      +   T+
Sbjct: 298 IVHCQLIGEFNVSNLLLALTTLLALGYPLPALLDSASRLQSICG---RMEVFHAEDRPTV 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++ A++       H  G+   V G   +  +  +     +AE  +    
Sbjct: 355 LVD-YAHTPDALEKALTA---ARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQYA---- 406

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +            +K  L  +                       D+V+V  K
Sbjct: 407 DRVIITDDNPRGEAAQDIINDIKSGLLDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris TIE-1]
          Length = 485

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 150/449 (33%), Gaps = 50/449 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++ P + FFA+ G   DG  F+  AV       V         G L++P   + +  
Sbjct: 28  DSRAVKPGDLFFALAGAKTDGARFVAAAVA---TGAVAVAGEHRPEGDLAVPFVQLSNAR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-------- 144
            AL + A     R    I A+TG+ GKT+           +    A IG+          
Sbjct: 85  LALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSV 144

Query: 145 -------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  + I +  +L  +  + +     E     L + R     VR      T ++  H
Sbjct: 145 YGSLTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRL--DGVRVAAGGFTNLSRDH 202

Query: 197 LSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--S 253
           +     +    +AK  +F  L +  G   ++ D      +   + A G++ + + G+   
Sbjct: 203 MDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLR-LITIGRNGD 261

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             A  +L           + V+  GK   +    +G    +N L+  G+V     D   A
Sbjct: 262 PGAGIKLIDATVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVIGTGGD---A 318

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             + +     EG   R      +    +  + Y   P ++   +  L    P+ + + + 
Sbjct: 319 AASFAALEHLEGAPGRLDLVGARNGAPVFVD-YAHKPDALAKTLQALR---PYAKRKLVV 374

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHV 424
           V G   +     +     +A      N   V ++  +           A+  A P +  +
Sbjct: 375 VFGAGGDRDSGKRPLMGAIA----AENADVVIITDDNPRSEDPATIRSAILAAAPGAREI 430

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           L  GD +V+  K 
Sbjct: 431 G---DRAEAIRTAIGELQPGDALVIAGKG 456


>gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 500

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/468 (16%), Positives = 150/468 (32%), Gaps = 49/468 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V+   ++S ++ P   F A+ G    G  F     +  A L       + +   
Sbjct: 3   GDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAAD-TEAAAILTDAEGKRILNDAG 61

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              P+  V+D+   L  ++    +    K TI+ +TG+ GKTTT  +L   L     +  
Sbjct: 62  EKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYSVG 121

Query: 139 CIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLV 182
            IG+    I        +                   V   + E+    L   R      
Sbjct: 122 LIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGR--VQGT 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R  +   T ++  HL     +E+   AKA +F+G +      +  DD +   +  ++ A 
Sbjct: 180 RFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVICVDDEWGRRMAQRAAAR 239

Query: 243 GIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNML 297
            +  + +  +  +AD   R+   + +    +E+ L       + E      G     N  
Sbjct: 240 PVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIANAA 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+ + +  +    ++           G+  R    Q F  ++D  Y   PA++ A +
Sbjct: 300 LATGMAASIGIEPQVFLEG---VEKVAVPGRMERVDRGQDFVAVVD--YAHKPAAIAAVL 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
             L        GR   V+G   +     +          +      V ++  +       
Sbjct: 355 ETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMG----AAAAKGADLVVVTDDNPRTEDPA 410

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A       +  +    +       + +    GD V+V  K 
Sbjct: 411 SIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKG 458


>gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli E128010]
          Length = 471

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 117-3]
          Length = 471

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|254462310|ref|ZP_05075726.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           HTCC2083]
 gi|206678899|gb|EDZ43386.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 471

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 152/423 (35%), Gaps = 51/423 (12%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARL 104
           GH F+    +    A +VV+++ + +    L       +PV    ++L  L +L +    
Sbjct: 63  GHIFVGQKAENLESAEVVVISSAIKSGNPELDEARRRGLPVVRRAEMLAELMRLKLN--- 119

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IA+ G+ GKTTT  M+   L +        G ++  +     +     +   G 
Sbjct: 120 ------IAVAGTHGKTTTTTMVATLLDA--------GKFDPTVVNGGIIHAYGSNARMGQ 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E  +    E     + +   IA++T I P H+ ++   E +     +    +   G   
Sbjct: 166 GEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWGTEENLHQGFLDFTSNIPFYGLAI 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--- 281
              DD+  + L  K   L  + + ++G +  AD +          +  ++ LQ +     
Sbjct: 226 CCTDDADVQTLVGK---LTDRRVVTYGFNAQADVRAVGLHYKGGVAMFDIHLQNEDQVIE 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +   L    D   +AL+ F       +R+         T+
Sbjct: 283 GCSLPMPGDHNVSNALSAVAVARHLGMSGDEIRRALAAFGGVN---RRFTKVAEIDGVTI 339

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDL 392
           ID+ Y  +P  + A +    Q S   EGR IA+        L    E  +    F+  D+
Sbjct: 340 IDD-YGHHPTEISAVLKAARQAS---EGRVIAIHQPHRYTRLHHHFE--DFCSCFNEADV 393

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVK 450
             +  +Y      + G     L   L R  H H     T D L   ++     GD+VV  
Sbjct: 394 VAITEIYAAGEEPIEGASRDDLVAGLIRHGHRHARSITTQDELTALVKEQAKPGDMVVCL 453

Query: 451 SSN 453
            + 
Sbjct: 454 GAG 456


>gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 520

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 158/463 (34%), Gaps = 48/463 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GS 80
           VP   V G+++ ++ + P + F A+ G    G      A+++GA  V+ +   VA + G 
Sbjct: 38  VPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERGAVAVLTDAAGVAQLTGG 97

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            + P          L +LA    A    + T+I ITG+ GKTTT  ++   L +  +T  
Sbjct: 98  RTTPTLLHPRPRSVLGQLAAAVYAHPSERLTVIGITGTSGKTTTTYLVESGLRAAGRTAG 157

Query: 139 CIGSYNNHIGVPLTLARMPVD----------------VDFGIFELGMSHLGEIRFLTHLV 182
            IG+    I      + +                   VD  + E+    L   R      
Sbjct: 158 LIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVMEVSSHALALGR--VDGT 215

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSH 240
           R  +   T ++  HL     + +   AKA +F+           +  DD     + A++ 
Sbjct: 216 RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRAVVCIDDEAGREMAARAG 275

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 +    + + A ++  +        Q +  +   G          G++   N L+
Sbjct: 276 DA----VTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHRAGIRLPGHYNVANCLV 331

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L ++  +    + A             G+       Q F  L+D  Y   P +++A +S
Sbjct: 332 ALALLDAVGVSPEQAAPG---LLQTRVPGRMEEIDAGQDFLALVD--YAHKPGALRAVLS 386

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            L +     + R   V G   E     ++      AE+  L  ++     G    A++  
Sbjct: 387 SLKR----PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRRE 442

Query: 418 L-----PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +              E            +    GDVV+V  K 
Sbjct: 443 ILAGVTESGCAAEVVEIGDRRAAIRHAVAWAGPGDVVLVAGKG 485


>gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 476

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 142/398 (35%), Gaps = 48/398 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV++ +      +       IPV    ++L  L +L            +A+ G+
Sbjct: 66  KDAAVVVVSSAIHRGNPEVEAALENRIPVVRRAEMLAELMRLKS---------TVAVAGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I   N  I           D D+ + E   S    +R
Sbjct: 117 HGKTTTTSMVAALLDAGGIDPTVI---NGGIINSYGSNARLGDSDWMVVEADESDGSFLR 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T I P HL ++   E++  A  E    +   G  FL  D    + + 
Sbjct: 174 -----LDGTLAIVTNIDPEHLDHYGSFEKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSIL 228

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGY 290
            +      + + ++G S  AD +       S  +     ++ +  ++           G 
Sbjct: 229 PRIR---DRRLITYGFSAQADIRAVDITPISGGNRFTAVIRSRDGDIRRIENIFLPMPGR 285

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  QN L  +G+    +          + F   + R  R           L+ + Y  +P
Sbjct: 286 HNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKIGDGSVLVIDDYGHHP 345

Query: 351 ASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNI 401
             +KA +S   + +     R IAV        L D+  M E   +F+  D+  V  +Y  
Sbjct: 346 VEIKAVLSAARESAQQ---RVIAVVQPHRFSRLHDL--MTEFQSAFNDADMVFVAPVYAA 400

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFI 437
               ++G    AL   L +  H      ++   L + +
Sbjct: 401 GEQPIAGVDSQALVSGLKQHGHRSAQAVDSPRSLAIAL 438


>gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans
           C54]
          Length = 468

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/413 (21%), Positives = 156/413 (37%), Gaps = 52/413 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +  +  IPV     +L  L +L            IA+ G+ GKTTT  ++
Sbjct: 73  AVAGDNPEVIAARAARIPVVPRAIMLAELMRLKRG---------IAVAGTHGKTTTTSLV 123

Query: 127 TIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L++  +  T+   G  N+        AR+    D+ + E   S    +  L     P
Sbjct: 124 ASILAAGDLDPTFVIGGRLNS----AGANARLGQG-DYIVVEADESDASFLNLL-----P 173

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +A++T I   H+  +   +  + SA  E  + L   G+  L  DD+    +        
Sbjct: 174 VMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCTDDANVREIM----PFV 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----MEVVHHGIGYHMAQNMLM 298
            + I S+G +++A  +  + +    +    VQ   +      ++V  +  G H  +N L 
Sbjct: 230 SRPITSYGLNEDAMVRGYEVQADGTRMRFNVQRSHRDTLLPPLQVELNLPGLHNVRNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASM 353
            + + + L    +    AL+ F     R               G FT+ID+ Y  +P  M
Sbjct: 290 AIAVATELGVSDEAIRDALASFKGVGRRFTQTGEFPVPAVHGGGTFTVIDD-YGHHPVEM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH 410
            A +   +        RRI VL         ++    D   VL   +    + V+ +G  
Sbjct: 349 AATL---AAARGAWPDRRI-VLAFQPHRYTRTRDCFEDFVRVLGTADAVLLTEVYAAGEP 404

Query: 411 VLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L   D  AL R++ V       + E +  L   +   + DGDVV+V  + S 
Sbjct: 405 PLVAADGRALSRALRVAGKVEPVFVEDVADLPQAVVDFVRDGDVVIVMGAGSI 457


>gi|317050839|ref|YP_004111955.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
 gi|316945923|gb|ADU65399.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
          Length = 453

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 151/417 (36%), Gaps = 41/417 (9%)

Query: 52  DGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
             H  I  A V   +  V      VA      IPV    ++L  L ++            
Sbjct: 57  HAHSNITDAHVVVTSSAVSKENPEVAEARRKRIPVISRAEMLAELMRM---------KHG 107

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + I G+ GKTTT  ++   L+         IG   N I     L +     D  + E   
Sbjct: 108 VLIAGAHGKTTTTSLVATVLTDAGLDPTVVIGGRLNKIKSNAKLGQG----DLIVAEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P ++V+T I   H+ ++  +E + +   +        G  F+  DD
Sbjct: 164 SDGSFMH-----LPPVLSVVTNIDKEHMDHYGSMENLKNTFLKFINKTPFFGVSFVCLDD 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
              + +  +      ++  ++G + NAD      ++ +     +V   G+ + E      
Sbjct: 219 EHIQDILPRIE----RSHVTYGLNTNADIFAHHIRRTNGCQRFDVNYNGRELGEFRLCLP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  +GI       VDT   +L  F    G  +R+    +   F ++D+ Y  
Sbjct: 275 GVHNVVNSLPVIGIALEFEVPVDTIRHSLEHF---AGVHRRFEITGHMNGFAVVDD-YGH 330

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGE-LSQSFH-IDLAEVLSLYNI 401
           +P  + A +    +      G+ IA+        + E+ E  ++SF+  D   V  +Y  
Sbjct: 331 HPTEIMAVLKAAREW---YSGKVIAIFQPHRYSRVRELYEDFTKSFYDADEVIVADIYPA 387

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               + G +   +   +    H  V +    D +  ++++   +   ++   + +  
Sbjct: 388 GEAPIPGLNSQKIAQEIKARGHKQVTHMAGFDEIVAYLKAQHCEDGAIITLGAGNVN 444


>gi|304396564|ref|ZP_07378445.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
 gi|304356073|gb|EFM20439.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
          Length = 492

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 137/407 (33%), Gaps = 47/407 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAREQRIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +           +  + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGNSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD+    L  +      + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDAVIRDLLPRV----GRHITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K+ +++  +  G H A N    + + S    + +  +
Sbjct: 256 ADLRIENYEQSGAQGHFTLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDNAIL 315

Query: 315 KALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
            AL  F     R              Q    ++ + Y  +P  + A I            
Sbjct: 316 AALESFQGTGRRFDLLGEFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAGWPDKKL 375

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                PH   R   +  D   +       H+D+  +L +Y+     + G    +L  A+ 
Sbjct: 376 VMVFQPHRYSRTRDLFDDFANVLS-----HVDVLLMLDVYSAGETAIPGADSRSLCRAIR 430

Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V        D L   +   L   D+++V+ + + G  ++   L
Sbjct: 431 NRGKVDPILVPEHDALPEMLAPLLSGNDLILVQGAGNVG--KVARKL 475


>gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
 gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
          Length = 471

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 143/407 (35%), Gaps = 49/407 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +     +PV    ++L  L ++            IA+ G+ GKTTT  M
Sbjct: 84  SAIKPGNPELDAARQRGLPVVRRAEMLAELMRMKSN---------IAVAGTHGKTTTTTM 134

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G +N  +     +     +   G  E  +    E     + +   
Sbjct: 135 VAALLEE--------GKFNPTVVNGGIIHAYGSNARVGDGEWMVVEADESDGTFNRLPAT 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE + +   +    +   G      DDS  + L  K   +  +
Sbjct: 187 IAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGK---ITDR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +          +  +V LQ + +   +      G H   N L  + +
Sbjct: 244 RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEGLTIVDCALPMPGDHNVSNALSAIAV 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F   +G G+R+         T+ID+ Y  +P  + A +    Q
Sbjct: 304 ARYLGMKTEEIRTALTAF---KGVGRRFTRVGEVDGVTIIDD-YGHHPTEITAVLKAARQ 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV------LSLYNISHVWLSGFHVLALK- 415
            S   EGR IAV              H   A+         +  I+ V+ +G  V+    
Sbjct: 360 AS---EGRIIAV-----HQPHRYTRLHHHFADFCACFNDADVVAITEVFAAGEDVIEGAT 411

Query: 416 --DALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             D +   I   + +         L   ++     GD+VV   + S 
Sbjct: 412 RDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMVVCLGAGSI 458


>gi|227524691|ref|ZP_03954740.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088175|gb|EEI23487.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 443

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 141/372 (37%), Gaps = 52/372 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I ++G+ GKT+T  +L+  LS I  T   IG  +          R   +  F ++E
Sbjct: 103 GKTSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSG---------RGVPNARFFVYE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   +  I+++  A  + F    K G IF  
Sbjct: 154 A-----DEYRRHFLATEPDYAIMTNIDFDHPDYYKNIDDVQDAF-QTFANQTKKG-IFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     LKAK        IY +G +   DFQ    K+ ++ S   V+ +GK + E   
Sbjct: 207 GDDKRLRKLKAKV------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTV 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D++   + L  F   + R    + +      T+ID+ 
Sbjct: 261 PLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS----GMTIIDD- 315

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +KA I    Q       ++IAV+         + +   D A+ L+L     V+
Sbjct: 316 YAHHPTEIKATIDAARQ---EYPSKKIAVVFQ-PHTFSRTIALMDDFAKSLNL--ADEVF 369

Query: 406 L----------SG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L          SG      L   + +   +  S+ M  L  +      D DV++   +  
Sbjct: 370 LTQIYSSPRESSGKVSSEDLSRKITKGGRILSSDNMSPLLDY------DNDVIIFMGAGD 423

Query: 455 C-GFYRLINLLL 465
              + +    LL
Sbjct: 424 IQKYEKTYEDLL 435


>gi|157825459|ref|YP_001493179.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia akari str.
           Hartford]
 gi|166224721|sp|A8GMP6|MURC_RICAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157799417|gb|ABV74671.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia akari str.
           Hartford]
          Length = 478

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 141/408 (34%), Gaps = 42/408 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +       IP+    ++L  L +L            +A++GS GKTTT  +
Sbjct: 80  SAINSNNPEIKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +     +      C    N  I    +        ++ I E   S    I      +   
Sbjct: 131 MACLFEAAGL---CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPST 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I P HL  +   E +  A       L   G      D +    L      +  +
Sbjct: 183 IAIITNIDPEHLDYYKDFETLIGAFKSFITNLPFYGFAVCCIDHTIVRKLVDD---ITER 239

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNML 297
            I ++G  S++A             S  +V++   ++       ++     G H   N L
Sbjct: 240 KIVTYGIDSEDAHIIAFNINTDIASSTFDVKINIPNVLGTTIIEKITIPTPGRHNILNSL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L   +       + F   +   +R+          +ID+ Y  +P  +KA +
Sbjct: 300 AAIAVGIELDFGIKAIKNGFNNFKGVK---RRFTKVAEYNNAVVIDD-YAHHPEEIKATL 355

Query: 358 SVLSQISPHGEGRRIAVL-----GDMCEM-GELSQSFH-IDLAEVLSLYNISHVWLSGFH 410
           +    I+    G+ IA+        M  +  +  + F+  D+  +  +Y      + G  
Sbjct: 356 ATARNIADKQNGKVIAIFQPHRYSRMQHLFDDFMRCFNDADMIYITDIYAAGEEPIEGVT 415

Query: 411 VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              L D + ++ H    ++   ++ +   I  +   GD++++  + + 
Sbjct: 416 GQNLVDKITKNKHHDQANFLAELEDVVGVIIDNAASGDMIIIMGAGNI 463


>gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
 gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
          Length = 471

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|326390852|ref|ZP_08212404.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993111|gb|EGD51551.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 464

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 158/420 (37%), Gaps = 47/420 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV                 L+IP      +LG + K             IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRATLLGLIMKKYKYG--------IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L  +         ++  + V   +  +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVILDGMG--------FDPTVLVGGEVDVIGGNVRVGNSEYFLTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVVN 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQN 295
             +    K I ++G  +++D++ +      +  +  +V  + + M        G H   N
Sbjct: 231 GLN----KNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F   +G  +R+         T++D+ Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKA 342

Query: 356 AISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +                PH   R  ++L D    G    +  I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFA--GSFDNADKIIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S   ++ L     R   V Y +  D +  ++  +   GD+V+   + +   Y +  + L+
Sbjct: 401 SSKDLVEL--ISQRGKDVLYLKDFDSIVEYLNKNAKTGDLVLTVGAGNI--YEVGEMFLK 456


>gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
 gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
          Length = 471

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 152/400 (38%), Gaps = 37/400 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F AIKG   DG  +I  A+ +G   V+   +  A  G +     +PV 
Sbjct: 2   TLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            ++D+   L+ L      +  +K  ++ +TG+ GKTTT +++      + +T A +G+  
Sbjct: 62  YLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   ++ +         I                + +S  G ++     ++   AV T
Sbjct: 122 NGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKT 246
            ++  HL     +E   +AK  +F     T +  +N DD+    + + L           
Sbjct: 182 NLSRDHLDYHGDMESYEAAKWLLFS-THNTKSQIINADDAIGLKWLQRLPQACAVTMENK 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I    +      +  + +   + + +       + +     +G     N+L+ +  + ++
Sbjct: 241 IPQDWQGPW--LKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMATLLMM 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  + A S   P  GR + +  A N+    +    Y   P +++ A   L+    H
Sbjct: 299 DYPLNKLLAATSSLSPVCGRMEVF-SAPNKPTVVV---DYAHTPDALEKA---LAAARLH 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +G+   V G     G+  +     +      Y    V  
Sbjct: 352 CKGQLWCVFGC---GGDRDKGKRPLMGAAAEEYADKIVIT 388


>gi|227513548|ref|ZP_03943597.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
 gi|227083421|gb|EEI18733.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
          Length = 443

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 142/372 (38%), Gaps = 52/372 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I ++G+ GKT+T  +L+  LS I  T   IG  +          R   +  F ++E
Sbjct: 103 GKTSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSG---------RGVPNARFFVYE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R      +P  A++T I   H   +  I+++  A  + F    K G IF  
Sbjct: 154 A-----DEYRRHFLATKPDYAIMTNIDFDHPDYYKNIDDVQDAF-QTFANQTKKG-IFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     LKAK        IY +G +   DFQ    K+ ++ S   V+ +GK + E   
Sbjct: 207 GDDKRLRKLKAKI------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTV 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D++   + L  F   + R    + +      T+ID+ 
Sbjct: 261 PLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS----GMTIIDD- 315

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +KA I    Q       ++IAV+         + +   D A+ L+L     V+
Sbjct: 316 YAHHPTEIKATIDAARQ---EYPSKKIAVVFQ-PHTFSRTIALMDDFAKSLNL--ADEVF 369

Query: 406 L----------SG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L          SG      L   + +   +  S+ M  L  +      D DV++   +  
Sbjct: 370 LTQIYSSPRESSGKVSSEDLSRKITKGGRILSSDNMSPLLDY------DNDVIIFMGAGD 423

Query: 455 C-GFYRLINLLL 465
              + +    LL
Sbjct: 424 IQKYEKTYEDLL 435


>gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
 gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
          Length = 499

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 146/481 (30%), Gaps = 49/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+A        +    V  ++ DSR +     F  + G   DG  F   A+  GA 
Sbjct: 2   LHALLKAAGLPVPSGLANATVTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAA 61

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTT 122
            V++     AS        V  + D +         A   +  ++  +I +TG+ GKTTT
Sbjct: 62  AVLIGEQAAASHPPAFGDAVLVLPDPVSVWAGELASAFWQQPSTRLGLIGVTGTNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++     +  +  A  G+  N        A                 +         E
Sbjct: 122 THLIEHLSQACGQPAALFGTLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAAME 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTI 223
           +    L + R      R   AV T +   HL     +E    AK+ +F     + +    
Sbjct: 182 VSSHALDQHR--VAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRA 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +   L  +      +  +S     +AD  +   +  S      +         
Sbjct: 240 VVNTDDPWGRQLADRL----GERCWSSSLETHADLTMGDLRMTSAGVDGLLVTPLGEGRF 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTL 341
               +G     N++  +G +      +   + ++  F    GR +R              
Sbjct: 296 HSPLVGRFNLMNLMQAVGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPS 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P  ++   + L    P  +GR + + G     G+  +     +A + +    
Sbjct: 356 VIVDYAHTPDGLR---NALLASRPFTKGRLVCLFGC---GGDRDRGKRPQMASIAASL-A 408

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +            +   LP                         D++++  K
Sbjct: 409 DRVVITSDNPRTENPNQILEDIVVGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGK 468

Query: 451 S 451
            
Sbjct: 469 G 469


>gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 471

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|86749119|ref|YP_485615.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
 gi|109892730|sp|Q2IYK6|MURC_RHOP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86572147|gb|ABD06704.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
          Length = 468

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 149/415 (35%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA ++VV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  AGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    D+ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGDFDPTVIN--GGIINAYGTNARLGAG-DWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G++  AD +L + K     S  +V  + +         E++    G
Sbjct: 228 GKIE---DRRIITYGENPQADARLLELKPSGSGSTFKVAFRDRKAGTAHEIAELMLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+    +    T+ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGDWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    Q     +GR IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARQ---STDGRVIAVVQPHRFTRLQSLFEEFCTCFNDADSVIVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H +         L   +      GD VV   + + 
Sbjct: 398 EAPIQGIDRDHFVLGLRAHGHRNVIPLQDSASLAGVVAGVAKSGDYVVCLGAGNI 452


>gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. TJI49]
          Length = 513

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 159/473 (33%), Gaps = 43/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  AV +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLGAGDVFVAYAVDGADNRGFIAEAVARGAAA 68

Query: 68  VVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V+   + + A+  +         D L                  I +TG+ GKT+  + +
Sbjct: 69  VLYQPEGLAAASAAPVALAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGMS 170
             AL+++ +  A IG+  + +   L               +LA++       +  E+   
Sbjct: 129 ATALTALHQPCAVIGTLGSGMPGQLVPTGFTTPDAPQLQRSLAQLSAAGAKAVAMEVSSH 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L + R   +     IAV T +   HL      +   +AKA++F          +N DD+
Sbjct: 189 ALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVVNRDDA 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               L  K         Y  G ++ A     +      +  +  +   +       +V  
Sbjct: 246 AGRRLLEKLAGRVRTIAYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDADVEV 305

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  LG +       D A+  ++      GR +R      Q    L+   
Sbjct: 306 GTLGTFNVSNLLAVLGALLAADVPFDAALAEVARLESVNGRMQRL-GGRLQSDEPLVVID 364

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  +  L  I+    GR + + G   +     +     +AE L+      V 
Sbjct: 365 YAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DEVV 420

Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           ++  +  +         +   +        +E     +   ++ +  +  VV+
Sbjct: 421 VTSDNPRSEDPQAIIDQIVAGMTAPDRARRTEDRASAILQAVRGAAREDVVVL 473


>gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
          Length = 491

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 151/421 (35%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 87  AIPADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAIAGTHGKTTTTAMI 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SGIYAQAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       E +          L   G   +  DD   + L  +      +
Sbjct: 190 AVVTNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVVKELIPRI----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S+ AD ++  ++Q   Q +  V  QG   + VV +  G H A N    + + +
Sbjct: 246 YVTTYGFSEEADVRITHYEQKGAQGFFTVSRQGFPDLHVVLNAPGCHNALNATAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
               +    + +L+ F    G G+R+        +    +    ++ + Y  +P  + A 
Sbjct: 306 EEGINDSAILASLAEFQ---GTGRRFDFLGDFSLKYINKKEGSVMLVDDYGHHPTEVDAT 362

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLA 413
           I      +   + R + +          ++  + D A VLS  ++     V+ +G   + 
Sbjct: 363 IKAAR--AGWTDKRIVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGETPIP 418

Query: 414 LKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             D  +L R+I         +    + +   +   + + D+V+V+ + + G  ++   L 
Sbjct: 419 GADSRSLCRTIRSRGKLDPIFVSDPEQISSILSQFMENNDLVLVQGAGNIG--KIARNLA 476

Query: 466 E 466
           E
Sbjct: 477 E 477


>gi|227327090|ref|ZP_03831114.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 486

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 141/409 (34%), Gaps = 43/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAITADNPEIVAAHDARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VSSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  +      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMCIDDAVIRELLPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  + Q   Q    ++ + K +  V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSDDADVRISGYHQTGAQGHFTLERKDKPLLTVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D D  ++AL  F     R              Q    ++ + Y  +P  + A I 
Sbjct: 305 TDEGIDDDAILRALERFQGTGRRFDFLGEYPLELVNGQSGTAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALK 415
                 P+   R + +          ++  + D A VLS  ++     V+ +G   +   
Sbjct: 365 AARAGWPNK--RLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGESPIPGA 420

Query: 416 D--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           D  +L R+I             +D L   +  +L   D+++V+ + + G
Sbjct: 421 DSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQGAGNIG 469


>gi|227510539|ref|ZP_03940588.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190191|gb|EEI70258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 443

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 141/372 (37%), Gaps = 52/372 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I ++G+ GKT+T  +L+  LS I  T   IG  +          R   +  F ++E
Sbjct: 103 GKTSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSG---------RGVPNARFFVYE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   +  I+++  A  + F    K G IF  
Sbjct: 154 A-----DEYRRHFLATEPDYAIMTNIDFDHPDYYKNIDDVQDAF-QTFANQTKKG-IFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     LKAK        IY +G +   DFQ    K+ ++ S   V+ +GK + E   
Sbjct: 207 GDDKRLRQLKAKV------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTV 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      D++   + L  F   + R    + +      T+ID+ 
Sbjct: 261 PLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS----GMTIIDD- 315

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +KA I    Q       ++IAV+         + +   D A+ L+L     V+
Sbjct: 316 YAHHPTEIKATIDAARQ---EYPSKKIAVVFQ-PHTFSRTIALMDDFAKSLNL--ADEVF 369

Query: 406 L----------SG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L          SG      L   + +   +  ++ M  L  +      D DV++   +  
Sbjct: 370 LTQIYSSPRESSGKVSSEDLSKKITKGGRILSADNMSPLLDY------DNDVIIFMGAGD 423

Query: 455 C-GFYRLINLLL 465
              + +    LL
Sbjct: 424 IQKYEKTYEDLL 435


>gi|323694259|ref|ZP_08108435.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
 gi|323501732|gb|EGB17618.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
          Length = 459

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 154/426 (36%), Gaps = 49/426 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
              ++ G   VV    +              IP+    ++LG + K    A        I
Sbjct: 63  AENIKDGIDAVVYTAAIHEDNPEFMEVKRRGIPMMSRAELLGQMMKNYREA--------I 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+T                N  I V   L  +  ++  G  E  ++ 
Sbjct: 115 AIAGTHGKTTTTSMVTEIFLEADN--------NPTISVGGILNSIGGNIRVGGPEFFVTE 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P +AVI  I   HL  F  I++I  +  +  E + + GTI +N     
Sbjct: 167 ACEYTNSFLSFYPTMAVILNIEEDHLDFFKNIDDIRRSFRQFIEKVPENGTIIMNGTIEN 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-G 289
           +  L A +       + +FG SK  D+           +   ++ ++G+  E +  G+ G
Sbjct: 227 WRELTAGAAG----KVVTFGNSKENDYSFDAVVYDEYARPSFDLYIKGEKKERISLGVQG 282

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +     A ++ A + L  F    G  +R+         T+ID+ Y  +
Sbjct: 283 EHNVYNALGAIAVAMESGAGLEAAGRGLLKFT---GTNRRFEKKGELKGITIIDD-YAHH 338

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           P  ++A +      + +   +RI            +++F  + A+ LSL         Y 
Sbjct: 339 PQEIEATLKA----AENYPHKRIC-CAFQPHTYTRTKAFMKEFAQALSLADCVMLTDIYP 393

Query: 401 ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                  G     +   L  + +   Y  T D +  FI  +   GD+++   +      +
Sbjct: 394 ARETDTLGVSSADIVALLKEKGVDAWYLPTFDDMEKFILENCTQGDLLITMGAGDI--VK 451

Query: 460 LINLLL 465
           +   LL
Sbjct: 452 VGEELL 457


>gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
 gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
          Length = 459

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 153/402 (38%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +   +     IP+    ++LG L        + +    IA++G+ GKTTT  M
Sbjct: 77  AAIHEDNEEFKAAAQKGIPMLSRAELLGQL--------MTNYDVPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L          G  +  I V   L  +  ++  G   L ++   E         P 
Sbjct: 129 LSHIL--------LAGDLDPTISVGGILKAIGGNIKVGTSGLFVTEACEYTNSFLHFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VI  I   HL  F  +++I ++       L   GT+ +N +    E + A        
Sbjct: 181 ISVILNIDEDHLDFFKDLDDIRNSFRRFAALLPADGTLVINGEIENLEEITAGLSC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            + ++G   + ++         +  +  ++   G+ ME V   + G H   N L  + + 
Sbjct: 237 RVVTYGTEHSMNYSASNISHNEKGDASFDLVKNGEFMERVQLSVNGDHNVSNALAAVAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            IL+  +    + L  F    G  +R+     +  FT+ID+ Y  +P  +KA+++  +  
Sbjct: 297 DILSVPLADICRGLKEF---AGTNRRFEHKGEKNGFTVIDD-YAHHPTEIKASLTAAAHY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  +  +   L+ + H+ LA++ +      +   G     +
Sbjct: 353 PHKELWCVFQPHTYTRTKALFHEFVD--ALALADHVILADIYAARETDTL---GISSRDI 407

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            DAL  +    +Y  T   +  F       GD+++   +   
Sbjct: 408 ADALKEKECDAYYFSTFKEIEDFCLDMCHKGDLLITMGAGDV 449


>gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 146/425 (34%), Gaps = 40/425 (9%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           A+    + GHD    A    A +V      +   +       IPV    D L AL     
Sbjct: 52  ALGATVHIGHDAAHLAEDTSAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMA--- 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI G+ GKTTT  ML ++L+++          +    +   L     + 
Sbjct: 109 ------GTRPLAIAGTHGKTTTTSMLAVSLTTLG--------LDPSYAIGGDLDAPGSNA 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E+ ++   E     H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 155 HHGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +        + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRGLTSEVTVSLNGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   +   +R +         
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVK---RRLQLKGEAAGVQ 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------ 394
           ++ +SY  +P  M A +     +    EGR + V      +   +Q    ++ +      
Sbjct: 332 VV-DSYAHHPTEMAADLEA---MRGAVEGRILVVF--QPHLFSRTQELGKEMGQALALAD 385

Query: 395 ---VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              VL +Y      + G      +         V      D +   +      GD+V+  
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVLTM 445

Query: 451 SSNSC 455
            +   
Sbjct: 446 GAGDV 450


>gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SS3/4]
          Length = 460

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/412 (21%), Positives = 154/412 (37%), Gaps = 42/412 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +    A+  + ++P+    ++LG L K             IA++G+ GKTTT  M
Sbjct: 77  AAVHPDNPEYAAAAAKNLPILSRAELLGQLMKNYE--------KSIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT  L   KK        N  I V   L  +  ++  G  EL ++   E         P+
Sbjct: 129 LTEILMDEKK--------NPTISVGGMLDSIGGNIRVGGPELFVTEACEYTNSFLSFFPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +I  I   HL  F  IE+I  +  +  E L   G + +N D       K     L IK
Sbjct: 181 MEIILNIEADHLDFFKDIEDIRHSFRKFAELLPANGVLIINSD---IRDYKEICDGLPIK 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIV 303
            I        + +            +   +   GK+++ +  G  G H   N L ++   
Sbjct: 238 VITVGSDPAKSHYSAADVTFNENACATYTLLEDGKAIDTITLGVPGIHNVYNSLASIAAA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L    +     L  F    G  +R+      G  T+ID+ Y  +P  + A ++     
Sbjct: 298 HELGIRGEGIRNGLLRFT---GTHRRFEKKGMIGGVTVIDD-YAHHPQEIAATLAAAKNY 353

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A++ D  +   LS + H+ LA++ +     ++   G     L
Sbjct: 354 PHREIWCVFQPHTYTRTKALMEDFAK--ALSAADHVVLADIYAARETDNL---GISSGTL 408

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +       HY  + D +  F+  + V+GD+++   +      ++   LL
Sbjct: 409 AEKIAALGTDTHYFPSFDAIETFLLENCVNGDLLITMGAGDI--VKVGEKLL 458


>gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC
           19707]
 gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC
           19707]
          Length = 476

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 150/423 (35%), Gaps = 46/423 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GHD     V+ G  +VVV++ +      +S      IPV    ++L  L +         
Sbjct: 67  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFRYG----- 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L           + +    +   +  +  +   G  E
Sbjct: 119 ----IAVAGTHGKTTTTSLIAGILGEA--------NLDPTFVIGGQVNSIGANSRLGKGE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E      L++P +AVIT +   H+         + +A  E    L   G   +
Sbjct: 167 YLVAEADESDASFLLLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVV 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEV 283
             DD     L         + + ++G  K AD+ LR+ KQ   Q+  +V   GK   + V
Sbjct: 227 CLDDPVLRELLPGI----GRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTV 282

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V +  G H A N L  + +   L        + L  F     R + Y          L+ 
Sbjct: 283 VLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLLV 342

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--------DLAEV 395
           + Y  +P  + A +  +    P    RR+ V+            F          D+  +
Sbjct: 343 DDYGHHPRELAATLEAIRAGWPE---RRLVVIFQPHRYTRTRDLFEEFIRVLSQVDVLLL 399

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    AL  A+     V     E  + +   +   L +GD+++   + 
Sbjct: 400 LEVYPAGEAPIGGADSRALWQAIQTHGQVSPILVEDKEIIGEMLFDLLQEGDLLLTVGAG 459

Query: 454 SCG 456
             G
Sbjct: 460 DIG 462


>gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
 gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
          Length = 464

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 150/423 (35%), Gaps = 46/423 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GHD     V+ G  +VVV++ +      +S      IPV    ++L  L +         
Sbjct: 55  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFRYG----- 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L           + +    +   +  +  +   G  E
Sbjct: 107 ----IAVAGTHGKTTTTSLIAGILGEA--------NLDPTFVIGGQVNSIGANSRLGKGE 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E      L++P +AVIT +   H+         + +A  E    L   G   +
Sbjct: 155 YLVAEADESDASFLLLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEV 283
             DD     L         + + ++G  K AD+ LR+ KQ   Q+  +V   GK   + V
Sbjct: 215 CLDDPVLRELLPGI----GRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTV 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V +  G H A N L  + +   L        + L  F     R + Y          L+ 
Sbjct: 271 VLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLLV 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--------DLAEV 395
           + Y  +P  + A +  +    P    RR+ V+            F          D+  +
Sbjct: 331 DDYGHHPRELAATLEAIRAGWPE---RRLVVIFQPHRYTRTRDLFEEFIRVLSQVDVLLL 387

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    AL  A+     V     E  + +   +   L +GD+++   + 
Sbjct: 388 LEVYPAGEAPIGGADSRALWQAIQTHGQVSPILVEDKEIIGEMLFDLLQEGDLLLTVGAG 447

Query: 454 SCG 456
             G
Sbjct: 448 DIG 450


>gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
 gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
          Length = 520

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 157/463 (33%), Gaps = 48/463 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GS 80
           VP   V G+++ ++ + P + F A+ G    G      A+++GA  V+ +   VA + G 
Sbjct: 38  VPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERGAVAVLTDAAGVAQLTGG 97

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            + P          L +LA    A    + T+I ITG+ GKTTT  ++   L +  +T  
Sbjct: 98  RTTPTLLHPRPRSVLGELAAAVYAHPSERLTVIGITGTSGKTTTTYLVESGLRAAGRTAG 157

Query: 139 CIGSYNNHIGVPLTLARMPVD----------------VDFGIFELGMSHLGEIRFLTHLV 182
            IG+    I      + +                   VD  + E+    L   R      
Sbjct: 158 LIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVMEVSSHALALGR--VDGT 215

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSH 240
           R  +   T ++  HL     + +   AKA +F+           +  DD     + A++ 
Sbjct: 216 RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRAVVCIDDEAGREMAARAG 275

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 +    + + A ++  +        Q +  +   G          G++   N L+
Sbjct: 276 DA----VTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHRAGIRLPGHYNVANCLV 331

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L ++  +    + A             G+       Q F  L+D  Y   P +++A +S
Sbjct: 332 ALALLDAVGVSPEQAAPG---LLQTRVPGRMEEIDAGQDFLALVD--YAHKPGALRAVLS 386

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLA---- 413
            L +     + R   V G   E     ++      AE+  L  ++     G    A    
Sbjct: 387 SLKR----PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRRE 442

Query: 414 -LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            L  A          E            +    GDVV+V  K 
Sbjct: 443 ILAGATESGCAAEVIEIGDRRAAIRHAVAWAGPGDVVLVAGKG 485


>gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plautia stali symbiont]
          Length = 495

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 165/480 (34%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +       +  +++DSR+ A  + F A+ G H DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGALARPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  AS G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGEASDGDIREMHGVPVIYLAQLPQRLSALAGRFYQQPADKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----VDVDF----------GIF 165
           TTT +++    + + +T A +G+  N +   L  +       VDV             + 
Sbjct: 121 TTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLVGQGATVA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     ++   SAK  +F    + G   +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSE-HQVGEAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD        K     +    S            Q          + ++      + E
Sbjct: 240 NADDEVGRRWLEKLPD-AVAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFSSSWGNGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G     N+L+ L  +  L   +DT + + S   P  GR + +           +
Sbjct: 299 FDSRLMGAFNVSNLLLALATLLTLDYPLDTLVASASQLQPVCGRMEVFTAVHK----PTV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H +G+   V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALEA---ARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L                          D+V+V  K 
Sbjct: 408 IVVITDDNPRSEEPTAIINDILTGLLDPGRACVIAGRAQAVTHAVMQASADDIVLVAGKG 467


>gi|168187029|ref|ZP_02621664.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
 gi|169295057|gb|EDS77190.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
          Length = 458

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 155/413 (37%), Gaps = 45/413 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +     L+IP     + LG + +             +AI+G+ GKTTT  M
Sbjct: 77  AAIPSNNPELVKARELNIPTMDRAEFLGHVMQGHKYN--------VAISGTHGKTTTTSM 128

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   LS+         + +  I V   L  +  +V  G  E  ++   E +       P
Sbjct: 129 LSHITLSA---------NLDPTILVGGNLDVINGNVRVGNSEYFVTEACEYKASFLKFYP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++ +I  I   HL  +  I +I +   +  + +   G + +N DD     +  +      
Sbjct: 180 YVGIILNIEADHLDFYKDINDIQNTFLKFAKLIPSDGFLIVNADDERCIAVSKEVDC--- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
             + +FG   N + + +     +     +V    +    +  +  G H   + L ++   
Sbjct: 237 -NVITFGID-NGEVRAKNIVFTNGHPTFDVCKNEEKLFTLTLNVPGTHNILDALASISSA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   V++ I+ LS F    G  +R+         T++D+ Y  +P  +KAA++     
Sbjct: 295 LSLNVPVNSIIEGLSTF---NGAHRRFEIKGKVDGITVVDD-YAHHPTEIKAALNAAKNF 350

Query: 364 S---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R I++  D       + +    LA++ +        +S      L
Sbjct: 351 PHKRIFCVFQPHTYSRTISLFDDFSNSFSNADTL--VLADIYAAREKDTGIVS---SDML 405

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            D +    ++     + D +  F++  L +GD+++   +     Y++  + LE
Sbjct: 406 GDKIRENGVNCKNLHSFDDIVTFLKDELQEGDLLITIGAGDV--YKVGEMFLE 456


>gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli EPECa14]
          Length = 471

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +  +       + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|316933187|ref|YP_004108169.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
 gi|315600901|gb|ADU43436.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
          Length = 468

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 146/415 (35%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    D+ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVIN--GGIINAYGTNARLGAG-DWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTLV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G++  AD +L         S  +V  + +         +++    G
Sbjct: 228 GKIE---DRRIITYGENPQADARLLDLTPSGGGSTFKVAFRDRKAGTAHEIADLMLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    Q      G+ IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARQ---STAGKVIAVVQPHRFTRLQSLFEEFCTCFNDADAVIVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              ++G         L    H           L   +      GD VV   + + 
Sbjct: 398 EAPIAGIDRDHFVLGLRAHGHRDVVPLQDSASLAGVVAGLARSGDYVVCLGAGNI 452


>gi|296133658|ref|YP_003640905.1| UDP-N-acetylmuramate/alanine ligase [Thermincola sp. JR]
 gi|296032236|gb|ADG83004.1| UDP-N-acetylmuramate/alanine ligase [Thermincola potens JR]
          Length = 459

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 159/392 (40%), Gaps = 41/392 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVP 150
           L  L++  V A L ++   IA+ G+ GKTTT  M+ + L          +G     IG  
Sbjct: 90  LKILHRGDVLAGLMAEKKGIAVAGAHGKTTTTSMIALVLEKNGLDPTVVVGGELFDIGSN 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L +     ++ + E   S    ++     + P+I VIT I   HL  +   E+I +A 
Sbjct: 150 AKLGKG----EYLVAEADESDGSFLK-----LSPYIEVITNIEDDHLDYYGSTEKIDAAF 200

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E  E +   G   L ++    ++L  K      K   S+G    A+++ R       QS
Sbjct: 201 QEFTEKIPDEGFCILCFNSPKVKVLADKLK----KPFISYGIGVPAEYEGRNILCQGTQS 256

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++V  + + + ++  +  G H   N L  L +  ++    +    AL+ F    G G+R
Sbjct: 257 SVDVFYRNEYLGKLRLNVPGEHNLANALAALAVGRLVGLSFEQVADALASFT---GVGRR 313

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCE 380
           ++        T++D+ Y  +P  +KA +    +           PH   R   +     E
Sbjct: 314 FQLIGQVKGITVVDD-YAHHPTELKATLQAARKAGFARIISVFQPHRFTRTKFLYKQFGE 372

Query: 381 MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFI 437
                 +FH  D+  +  +Y+     ++G     + D + +     V++ +T + +  F+
Sbjct: 373 ------AFHGPDIIIITEIYSAGEKPIAGVSAQLIIDEVKKHTTAPVYFLKTEEDILEFL 426

Query: 438 QSSLVDGDVVVVKSSN---SCGFYRLINLLLE 466
            ++   GD+V+   +    + G   LI  L E
Sbjct: 427 LANTRSGDLVLTLGAGNIWAVGVE-LIRRLKE 457


>gi|253689952|ref|YP_003019142.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259509777|sp|C6DEU2|MURC_PECCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251756530|gb|ACT14606.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 486

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 142/409 (34%), Gaps = 43/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAITADNPEIVAAHDARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VTSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  +      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMCIDDAVIRELLPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  ++Q   Q    ++ + K +  V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSDDADVRVSGYRQVGAQGHFTLERKDKPLLTVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D +  ++AL  F     R              Q    ++ + Y  +P  + A I 
Sbjct: 305 TDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVNGQSGTAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALK 415
                 P  + R + +          ++  + D A VLS  ++     V+ +G   +   
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGESPIPGA 420

Query: 416 D--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           D  +L R+I             +D L   +  +L   D+++V+ + + G
Sbjct: 421 DSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQGAGNIG 469


>gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
 gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
          Length = 495

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 161/459 (35%), Gaps = 55/459 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+KG   DG  +I  A+ +G   V+      A  G +     +PV 
Sbjct: 26  TLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAVIAEAHGEAEEGEIRFVHGVPVI 85

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            ++D+   L+ L      +  S+  ++ +TG+ GKTTT +++      + +T A +G+  
Sbjct: 86  YLNDLNNRLSALAGEFYHQPSSQMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTVG 145

Query: 145 NHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N I   ++ +                 +         E+    L + R     ++   AV
Sbjct: 146 NGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLVQGR--VAALQFDAAV 203

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +    +AK  +F     T T  +N DD        +   L      
Sbjct: 204 FTNLSRDHLDYHGDMANYEAAKWLLFS-THHTKTQIINADDEVGLKWLQR---LPQACAV 259

Query: 249 SFGKSKNADFQL-----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +   S  A++Q             + + +       +       +G     N+L+ +  +
Sbjct: 260 TMEDSIPANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFESPLMGAFNVSNLLLAMATL 319

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++   ++  +   +   P  GR + +      G  T++ + Y   P +++ A   L+  
Sbjct: 320 LMMDYPLEKLLATTNALMPVCGRMEVFSVT---GKPTVVVD-YAHTPDALEKA---LAAA 372

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
             H +G+   V G     G+  +     +      Y    V ++  +  +         +
Sbjct: 373 RLHCKGKLWCVFGC---GGDRDKGKRPLMGASAEQY-ADKVVITDDNPRSEDPLDIINDI 428

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  S  V                    DV++V  K 
Sbjct: 429 MAGILDSSRVLAIPGRPEAVTNTILQAHPDDVILVAGKG 467


>gi|227113985|ref|ZP_03827641.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 486

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 141/409 (34%), Gaps = 43/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAITADNPEIVAAHDARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VSSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD+    L  +      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMCIDDAVIRELLPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  + Q   Q    ++ + K +  V  +  G H A N    + + 
Sbjct: 245 RHITTYGFSDDADVRISGYHQTGAQGHFTLERKDKPLLTVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D +  ++AL  F     R              Q    ++ + Y  +P  + A I 
Sbjct: 305 TDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVNGQSGTAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALK 415
                 P  + R + +          ++  + D A VLS  ++     V+ +G   +   
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGESPIPGA 420

Query: 416 D--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           D  +L R+I             +D L   +  +L   D+++V+ + + G
Sbjct: 421 DSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQGAGNIG 469


>gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 487

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 156/475 (32%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L A  G S        + G++ DSR + P   F AI G   DG       +     
Sbjct: 5   LSQVLAA-AGLSAPPGADPAITGVTADSRRVTPGMLFVAIPGTRADG----SAFIPAAIA 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                        +  +PV GVD+   AL  LA          ++A+TG+ GKT+T + L
Sbjct: 60  AGAAAIVAPRGTPAPGVPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTVDFL 119

Query: 127 TIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLG----EIRFL 178
                   +  A IG+        +     +   P  V        M+  G     I   
Sbjct: 120 RQIWGHQHRRAASIGTLGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAIEAS 179

Query: 179 THLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDD 229
           +H +  H         A  T +   HL     ++   +AK  +F+  L   G +  N D 
Sbjct: 180 SHGLDQHRLDGLRLSAAGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAANADM 239

Query: 230 S--FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + L+  +   G+  +   G++ +A  +L       E   + +   G + ++V   
Sbjct: 240 DTATLDALRDIAARRGL-DLRLVGEAGDA-IRLLGSTPLPEGQHLRIASGGVARDIVLAL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N L+   + +     +  AI  L       GR +R     N     +    Y 
Sbjct: 298 PGRFQADNALLAAALAAPGADGLARAIDLLPALRGVRGRMERAALLPNGAAAYV---DYA 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYN 400
             P ++   +  L    PH  GR IAV G   +     +           D+A V     
Sbjct: 355 HTPDALARLLDALR---PHASGRLIAVFGAGGDRDRGKRPLMGQEATRRADIAIVTDDNP 411

Query: 401 --ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 ++ G  +     A+                    S L  GDV+VV  K 
Sbjct: 412 RTEDPAFIRGEVLAGAPGAIEIGDRAR-------AIAEGLSMLRAGDVLVVAGKG 459


>gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
 gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 170/469 (36%), Gaps = 51/469 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           + I I+ +  +  I+I ++S  P + FFA+ G    G+DFI  A+  GA L++ +   + 
Sbjct: 5   NIIEIIKKLNIRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQAHIT 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S  +    V  V ++   +  +      +    ++A+TG+ GKT+             + 
Sbjct: 65  SYSN----VIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQ 120

Query: 137 YACIGSYN-------------------------NHIGVPLTLARMPVDVDFGIFELGMSH 171
            A IG+                           ++I     L ++  +    +     SH
Sbjct: 121 AASIGTLGVITTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFVALEASSH 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDS 230
             +   L  + +   A  T+ +  HL     + +   AK ++F E +   G   +N + +
Sbjct: 181 GLDQNRLMDI-KFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNIN 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++++K        + S    +  D Q+   +       +  + +    +     IG 
Sbjct: 240 ELSIIQSKITDEFGLKLLSV--EQQGDIQIINVQSSLNGQKVHFRYKNSDYKFEVLVIGR 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+ L +      D    I  LS   P +GR ++ +      F       Y   P
Sbjct: 298 VHITNILIALLLAVNAGFDSAKLIPLLSNLKPIKGRMEKIQFGNCYAFV-----DYALTP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++   ++ L  +  + +GR I + G       +++     +  V S  +   V ++   
Sbjct: 353 NALATMLTELRTL--NSKGRLITIFGGSENRDAIARRM--QMGIVASKLS-DLVIVTDQD 407

Query: 409 ---FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ K+ L  +              +  S +VD D++++  K 
Sbjct: 408 SGNEDPAAIRKEILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKG 456


>gi|237747015|ref|ZP_04577495.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378366|gb|EEO28457.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/430 (20%), Positives = 153/430 (35%), Gaps = 57/430 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++K A  +VV++ +      +      ++P+     +L  L +L        
Sbjct: 56  GH--APENIEK-ADAIVVSSAIRDDNPEVLAARKKNVPIVPRAVMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IAI G+ GKTTT  ++   L+      T+   G  N+               DF +
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAEGGFDPTFVIGGRLNSAGANAG-----LGAGDFIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      + P I VIT I   H+  +      +  A  E  + L   G +
Sbjct: 159 AEADESDASFL-----NLNPVIEVITNIDADHMDTYGHDFARLKQAFVEFTQRLPFYGRV 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282
            L  DDS    +K        K I ++G  ++AD +    +            +G   +E
Sbjct: 214 MLCIDDSNVREIK----PFISKPITTYGFHEDADVRAIDARAEGTLMIFTALQKGHPPLE 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR---YRCALNQGFF 339
           +  +  G H  QN    + I   L  +     +A+  F     R  R    R     G  
Sbjct: 270 ICLNQPGMHNVQNACAVIAIARELGIEDSAIQRAMEKFTGVNRRFTRLGKIRLPQKDGEK 329

Query: 340 ---TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                + + Y  +P+ M A ++      P+   R + V          ++    D  +VL
Sbjct: 330 IAEVELVDDYGHHPSEMAATLAAARGAYPN--RRLVLVF--QPHRYTRTRDLFEDFVKVL 385

Query: 397 SLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGD 445
           S  ++     V+ +G   +   D   L R+I V       + E +  +   + + + DGD
Sbjct: 386 SATDVLLLGEVYPAGEQPIIAADGRTLARTIRVAGKVDPVFVEDIAEMPSAVLNVIEDGD 445

Query: 446 VVVVKSSNSC 455
           VV+   + S 
Sbjct: 446 VVITMGAGSI 455


>gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
 gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
          Length = 459

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 152/412 (36%), Gaps = 43/412 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +    A      +P+    ++LG + K             IA++G+ GKTTT  M
Sbjct: 77  AAVHPDNPEYAEAKEKGLPILSRAELLGQMMKNYE--------NSIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L             +  I V   L  +  ++  G   L ++   E         P 
Sbjct: 129 ITEIL--------LAAEADPTISVGGILNSIGGNIRVGGPGLFVTEACEYTNSFLSFFPT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VI  I   HL  F  I++I  +     E L   G++ +N D    E +          
Sbjct: 181 MEVILNIEADHLDFFKDIKDIRHSFRLFAEKLPPNGSLVINNDIESREEITEGLPC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIV 303
            + ++GK   + +Q    +     ++  +++L G  ++ V  G  G H   N L    + 
Sbjct: 237 QVITYGKKPGSRYQAEAIRFDEYARATYDLKLDGNVVDTVTLGVPGEHNVYNSLAAAAVC 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           + L  + D   K L  F    G  +R+         T+ID+ Y  +P  ++A +      
Sbjct: 297 TELGIEFDLIKKGLKRFT---GTNRRFEKKGELSGVTIIDD-YAHHPQEIRATLETAKHY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L +  +   LS +  + LA++ +      +   G     +
Sbjct: 353 PHNKLWVAFQPHTYTRTKAFLEEFAD--ALSLADEVILADIYAARETDDL---GISSGDI 407

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  R +  HY  + D +  FI  + + GD+++   +      ++   LL
Sbjct: 408 AERIGKRGVKAHYFSSFDEIETFILENCIHGDLLITMGAGDI--VKVGEKLL 457


>gi|308185660|ref|YP_003929791.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
 gi|308056170|gb|ADO08342.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
          Length = 492

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 136/409 (33%), Gaps = 47/409 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAREQRIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +              + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDVVIRDLIPRV----GRHITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K+ +++  +  G H A N    + + S    + +  +
Sbjct: 256 ADLRIENYEQSGAQGHFTLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDNAIL 315

Query: 315 KALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
            AL  F     R              Q    ++ + Y  +P  + A I            
Sbjct: 316 AALESFQGTGRRFDLLGEFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAGWPDKKL 375

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                PH   R   +  D   +       H+D+  +L +Y+     + G    +L  A+ 
Sbjct: 376 VMVFQPHRYSRTRDLFDDFANVLS-----HVDVLLMLDVYSAGETAIPGADSRSLCRAIR 430

Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               V        D L   +   L   D+++V+ + + G  ++   L E
Sbjct: 431 NRGKVDPILVPEHDALPEMLAPLLSGNDLILVQGAGNVG--KVARKLAE 477


>gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
 gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
          Length = 460

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 140/372 (37%), Gaps = 38/372 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+   L  +       IG   +++     L +      F + E   
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDYLKGSSCLGKG----HFSVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     + PH  VIT I   H+ ++  ++ + +A  E  E L + G   +  D+
Sbjct: 164 SDGSFLK-----LHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPEAGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                + ++      +T  ++G   N D+  +           +V  +G ++  +     
Sbjct: 219 ENIRYVMSRVK----RTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGINISRISLRVP 274

Query: 289 GYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N L    +       +     KAL  F    G  +R+    +     ++D+ Y 
Sbjct: 275 GEHNVLNSLAAFIVAHECCGVENRFITKALGKF---IGAKRRFETKGHVAGVWVVDD-YA 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  +KA +    ++  H   R I V          +     + A          +  +
Sbjct: 331 HHPTEIKATLRAAKELEKH---RVICVF--QPHRYTRTSLLKDEFATAFTSADEIYMTDI 385

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     ++G     + DA+  + H  VHY  ++D +   +   +   D+V+   + S  
Sbjct: 386 YSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRPNDLVITMGAGSIN 445

Query: 457 FY--RLINLLLE 466
            Y  +L+ +L E
Sbjct: 446 QYGPKLLAILEE 457


>gi|261823015|ref|YP_003261121.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium wasabiae
           WPP163]
 gi|261607028|gb|ACX89514.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium wasabiae
           WPP163]
          Length = 486

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 141/409 (34%), Gaps = 43/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAITADNPEIVAAHDARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T   +            N  +              + I E   S    +      ++P 
Sbjct: 137 VTSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +A++T I   H+       E +          L   G   +  DD     L  +      
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMCVDDEVIRELLPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  ++Q   Q    ++ + K  + V  +  G H A N    + + 
Sbjct: 245 RHIITYGFSDDADVRIAGYRQTGAQGHFTLERKDKPLLNVTLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D ++ ++AL  F     R                   ++ + Y  +P  + A I 
Sbjct: 305 TDEGIDDESILRALERFQGTGRRFDFLGEYPLELVNGHSGTAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALK 415
                 P  + R + +          ++  + D A VLS  ++     V+ +G   +   
Sbjct: 365 AARAGWP--DKRLVMIF--QPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGESPIPGA 420

Query: 416 D--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           D  +L R+I             +D L   +  +L   D+++V+ + + G
Sbjct: 421 DSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQGAGNIG 469


>gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG]
 gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF]
 gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
 gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
          Length = 470

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 146/425 (34%), Gaps = 40/425 (9%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           A+    + GHD    A    A +V      +   +       IPV    D L AL     
Sbjct: 52  ALGATVHIGHDAAHLAEDTSAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMA--- 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI G+ GKTTT  ML ++L+++          +    +   L     + 
Sbjct: 109 ------GTRPLAIAGTHGKTTTTSMLAVSLTTLG--------LDPSYAIGGDLDAPGSNA 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E+ ++   E     H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 155 HHGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +        + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRGLTSEVTVSLNGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   +   +R +         
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVK---RRLQLKGEAAGVQ 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------ 394
           ++ +SY  +P  M A +     +    EGR + V      +   +Q    ++ +      
Sbjct: 332 VV-DSYAHHPTEMAADLEA---MRGAVEGRILVVF--QPHLFSRTQELGKEMGQALALAD 385

Query: 395 ---VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              VL +Y      + G      +         V      D +   +      GD+V+  
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVLTM 445

Query: 451 SSNSC 455
            +   
Sbjct: 446 GAGDV 450


>gi|27364038|ref|NP_759566.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus CMCP6]
 gi|29611803|sp|Q8DEL1|MURC_VIBVU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27360155|gb|AAO09093.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus CMCP6]
          Length = 486

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 140/405 (34%), Gaps = 40/405 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVKAAREARIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +                I E   S    +      ++P + ++T I
Sbjct: 147 AGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVCIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRIS----RQVITYG 254

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q  +Q    V  +  +++++  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIENYRQEGQQGKFTVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + A+        R +            ++ + Y  +P  +   I      +   E R
Sbjct: 315 DAILAAMVGTQGTGRRFEHLGEFETGNGNVMLVDDYGHHPTEVDVTIQAAR--NGWQEKR 372

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH 425
            + +          ++  + D A VL   ++     V+ +G   +A  D  +L R+I   
Sbjct: 373 LVMIF--QPHRYSRTRDLYDDFANVLEQVDVLVMLDVYAAGEKAIAGADSRSLCRTIRSR 430

Query: 426 ------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +      L   + + L +GD+++ + +   G  ++   L
Sbjct: 431 GKIDPIFVADTQQLPEVLANILQEGDLLLAQGAGDIG--KVARQL 473


>gi|220933950|ref|YP_002512849.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995260|gb|ACL71862.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 475

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 152/426 (35%), Gaps = 52/426 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  + A ++VV++ +      L       IPV    ++L  L +         
Sbjct: 63  GHD---AAYVQDADVLVVSSAIDPRNPELIAAREARIPVVRRAEMLAELMRFR------- 112

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IA+ G+ GKTTT  ++   L+      T+   G  N+      + +R+     + +
Sbjct: 113 --HGIAVAGTHGKTTTTSLVASLLAEGGLDPTFVIGGRLNST----ASHSRLGQGA-YLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      ++P IAV+T I   HL+        + +   E    L   G  
Sbjct: 166 AEADESDASFLH-----LQPIIAVVTNIDADHLATYQGDFGRLRATFLEFLHHLPFYGLA 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSM 281
            L  +D     + A+      + + ++G   +AD   R  +    ++  E+ L     ++
Sbjct: 221 VLCANDRELAGMIAEV----GRPVLTYGIGVDADVTARNVRAEGTRTHFEICLPERDDTL 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V  +  G H   N L  + +   L  D     + L  F     R + Y           
Sbjct: 277 AVTLNLPGRHNVLNALAAVAVAHELGVDDAAIQQGLDKFQGIGRRFQVYGELKTAAGTVT 336

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---- 397
           + + Y  +P  + A ++      P     R  VL         ++    D AEVLS    
Sbjct: 337 LVDDYGHHPTEIAATLAAARDAWPD----RRLVLAFQPHRYTRTRDLFEDFAEVLSSPDA 392

Query: 398 -----LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVK 450
                +Y      + G     L  A+     V+  + +  +     ++  L DGDV++ +
Sbjct: 393 LVLLDVYPAGEAAIPGADGRTLARAIRARGRVNPVFVDAPERFVETLKGVLRDGDVLLTQ 452

Query: 451 SSNSCG 456
            + + G
Sbjct: 453 GAGNVG 458


>gi|238898844|ref|YP_002924526.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259509775|sp|C4K735|MURC_HAMD5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229466604|gb|ACQ68378.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 493

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 151/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV++ +      +       IPV    ++L  L +             IAI G+
Sbjct: 77  KNASVVVVSSAIPEDNPEILAAHEARIPVIQRAEMLAELMRFR---------HGIAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+    +            N  +              + I E   S    I 
Sbjct: 128 HGKTTTTAMVASIYAQAGLD---PTFVNGGLIKAAGKHAQLGSSRYLIVEADESDASFIH 184

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +A++T I   H+       E +          L   G   L  DD     L
Sbjct: 185 -----LQPLVAIVTNIEADHMDTYQGNFEHLKQTFINFLHNLPFYGRAILCIDDQVIRTL 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQ 294
             +      + I ++G S++AD ++  ++Q    S+  + ++    +++  +  G H A 
Sbjct: 240 LPRIA----RHITTYGFSEDADIKITGYEQKEFTSYFMLERVHKPILKIQLNAPGRHNAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNAN 349
           N    + + +    + +  ++ALS F     R         +    Q    ++ + Y  +
Sbjct: 296 NAAAAVAVATEEGVEDEHILQALSFFQGTGRRFDCLGIFPLQPVNGQQGEVMLIDDYGHH 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  + A I       P    R + +          ++  + D   VLS  +I     ++ 
Sbjct: 356 PTEVAATIKAARVGWP--TKRLVMIF--QPHRYSRTRDLYDDFVNVLSQVDILLMLEIYS 411

Query: 407 SGFHVL------ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +      AL D++    H         + L   +   L + D+V+V+ + + G  
Sbjct: 412 AGESPIPDISSCALCDSIRDFSHRMPILVTDHEKLPSLLAKQLKENDMVLVQGAGNIG-- 469

Query: 459 RLINLLLE 466
           ++   L E
Sbjct: 470 KVARTLAE 477


>gi|119944904|ref|YP_942584.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas ingrahamii 37]
 gi|189029023|sp|A1SU20|MURC_PSYIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119863508|gb|ABM02985.1| UDP-N-acetylmuramate--L-alanine ligase [Psychromonas ingrahamii 37]
          Length = 487

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 161/424 (37%), Gaps = 50/424 (11%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV+T + A    L       IPV    ++L  L +             +A++G+ 
Sbjct: 78  GASVVVVSTAINADNPELLAAQQARIPVVRRAEMLAELMRYR---------HGVAVSGTH 128

Query: 118 GKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  ++      + +  T+   G  N+      T A++     + I E   S    +
Sbjct: 129 GKTTTTSLIASIYGQAQLDPTFVIGGLLNS----AGTNAKLGQS-RYLIAEADESDASFL 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                 ++P ++V+T I   H+  +    E +        + L   GT  +  DD+  E 
Sbjct: 184 H-----LQPMVSVVTNIEADHMDTYEGNFEVLKDTFVRFIQNLPFYGTAVVCLDDAVIEQ 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMA 293
           L  +      +   ++G  + AD ++  + QC  +S   V  +   +M++  +  G H A
Sbjct: 239 LIPRFA----RQTVTYGFHEQADVRISDFSQCVNRSEFSVHRINKPAMKIQLNLPGKHNA 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N    + +      D  +  KAL+ F     R ++Y          ++ + Y  +P  +
Sbjct: 295 LNAAAAIAVAMEDDIDDFSISKALNEFAGIGRRFEQYGEFETGRGKAILVDDYGHHPTEV 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHV 404
           +A I       P     +  V+         ++  + D A VL+          Y     
Sbjct: 355 QATIDAARAAWPD----KRLVMAYQPHRYTRTRDLYEDFAHVLAQVDQLLLLDVYAAGET 410

Query: 405 WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++G    +L   + +       +  + + L   +   + DGD+V+ + + + G   ++ 
Sbjct: 411 PIAGADSRSLCRTIRQRSGKEPIFVASPEVLPAMLAQIIDDGDLVLTQGAGNIG--AVVK 468

Query: 463 LLLE 466
            L E
Sbjct: 469 TLAE 472


>gi|163746132|ref|ZP_02153491.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
 gi|161380877|gb|EDQ05287.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
          Length = 472

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 142/422 (33%), Gaps = 49/422 (11%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARL 104
           G  F   A +   GA ++V+++ +      L       +PV    ++L  L +L      
Sbjct: 58  GRIFEGQAAENIEGAAVIVISSAIKPGNAELDEARRRGLPVVRRAEMLAELMRLKSN--- 114

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IA+ G+ GKTTT  ++   L          G  +  +     +     +   G 
Sbjct: 115 ------IAVAGTHGKTTTTTLVAELL--------VAGGIDPTVVNGGIIHAYGSNARMGQ 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E  +    E     + +   IA++T I P H+ ++   + +          +   G   
Sbjct: 161 GEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWGDFDTLRQGFLNFVSNIPFYGLAV 220

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--- 281
              D    + L  K   L  + + ++G +  AD +          +  +V LQ + M   
Sbjct: 221 CCTDHPEVQSLVGK---LTDRRVMTYGFNAQADVRAVGLHYKDGVAHFDVHLQSEDMVIE 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +   L   ++    AL  F       +R+         T+
Sbjct: 278 NCALPMPGDHNVSNALAAVTVARHLGMKLEQIRAALGSFGGVN---RRFTRVGEVDGVTV 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLA 393
           ID+ Y  +P  + A +    Q S   +GR IAV         LS  F          D+ 
Sbjct: 335 IDD-YGHHPVEISAVLKAARQAS---KGRVIAV-HQPHRYSRLSHHFDEFCACFNDADVV 389

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  +Y      + G     L   L +  H H    E  + L   +      GD+VV   
Sbjct: 390 GITDVYAAGEEPIPGADRDGLVAGLIQHGHRHAYAVEDAEALTQLVLREARPGDMVVCLG 449

Query: 452 SN 453
           + 
Sbjct: 450 AG 451


>gi|27381712|ref|NP_773241.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium japonicum
           USDA 110]
 gi|44888203|sp|Q89FU8|MURC_BRAJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27354881|dbj|BAC51866.1| UDP-N-acetylmuramate-alanine ligase [Bradyrhizobium japonicum USDA
           110]
          Length = 467

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 146/428 (34%), Gaps = 48/428 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
              K  + DG + ++      +  +  +   + +     IPV    ++L  L +L     
Sbjct: 57  VGHKAENVDGAEVVVV-----STAIKRDNPELMAARERRIPVVRRAEMLAELMRLKSC-- 109

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                  +AI G+ GKTTT  M+   L +       I      I    + AR+    D+ 
Sbjct: 110 -------VAIAGTHGKTTTTTMVATLLDAGGLDPTVIN--GGIINAYGSNARLGAG-DWM 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    ++     +   +A++T + P HL +F   E +  A     E L   G  
Sbjct: 160 VVEADESDGTFLK-----LPTDVAIVTNVDPEHLDHFKTFEAVQDAFRHFVENLPFYGFA 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-- 281
            +  D    + L  K      + I ++G++  AD +L         S  +V  + +    
Sbjct: 215 VMCIDHPVVQSLVGKIE---DRRIITYGENPQADVRLVDLTPMGGGSKFKVAFRDRKTGA 271

Query: 282 -----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                +++    G H A N    + +   L    +    A++ F   +   +R+      
Sbjct: 272 VHEIPDLMLPMPGRHNASNATAAIAVARELGVSDEAIRSAIAGFGGVK---RRFTKTGEW 328

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----H 389
              T+ID+ Y  +P  + A +    +      G+ +AV+       +  L + F      
Sbjct: 329 NGVTVIDD-YGHHPVEIAAVLKAARE---STNGKIVAVVQPHRYTRLQSLFEEFCTCFND 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVV 447
            D   V  +Y      + G         L    H           L   ++     GD+V
Sbjct: 385 ADAVIVADVYAAGEAPIDGIDRDHFVAGLRAHGHREVVPLPAAPELAGIVKGLAKSGDLV 444

Query: 448 VVKSSNSC 455
           V   + + 
Sbjct: 445 VCLGAGNI 452


>gi|294676377|ref|YP_003576992.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
 gi|294475197|gb|ADE84585.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
          Length = 468

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 141/439 (32%), Gaps = 54/439 (12%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-------TDMVASIGSLSIPVFG 87
           R +     FF  +G           A   G   VVV           +       +PV  
Sbjct: 50  RLVELGATFF--EGQR---------ASNIGEAAVVVISSAIKPGNPELEEARRRHLPVVR 98

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             ++L  L +L            IAI G+ GKTTT  M+   L         I      I
Sbjct: 99  RAEMLAELMRLRSN---------IAIAGTHGKTTTTTMVATLLDKGGFDPTVIN--GGII 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
               + AR     ++ + E   S     R     +   IA++T I P H+ ++  IE + 
Sbjct: 148 HAYGSNARAGAG-EWMVVEADESDGSFNR-----LPATIAIVTNIDPEHMEHWGTIENLR 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               +   G+   G      D    + L  K   +  + + +FG +  AD +    +   
Sbjct: 202 KGFYDFVSGIPFYGLAVCCTDHPEVQALVGK---ITDRRVVTFGFNAQADVRAVNLRFEG 258

Query: 268 EQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            ++  ++QLQ +            G H   N L  + +   L    D    AL+ F    
Sbjct: 259 GRNCFDIQLQAEGAVIEGCTLPMPGNHNVSNALAAVAVARHLGMKKDEIRDALANFAGVN 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              +  +     G  T+ID+ Y  +P  + A +    Q      G R+           L
Sbjct: 319 --RRFTKVGEVLGGVTVIDD-YGHHPVEIAAVLKAARQAVSATPGARVIAAHQPHRYTRL 375

Query: 385 SQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLF 434
              F          D+  +  +Y      + G     L   L R  H H       + L 
Sbjct: 376 QNLFDDFCTCFNEADVVAIADVYAAGEEPIPGASRDDLVSGLIRHGHRHARALLNEEDLA 435

Query: 435 LFIQSSLVDGDVVVVKSSN 453
             ++     GD+VV   + 
Sbjct: 436 RLVKEQARPGDIVVCLGAG 454


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 149/405 (36%), Gaps = 48/405 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N + +     L+IP+    + LG + K             IA++G+ GKTTT  M
Sbjct: 76  AAISKNNEELLKAKDLNIPLMDRAEFLGEIMKGHKYN--------IAVSGTHGKTTTTSM 127

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   L +       +G   + IG  + +   P    F I E        ++F      P
Sbjct: 128 LSSITLEANLDPTILVGGNLDIIGGNVRIGNSP----FFITEACEYKESFLKFF-----P 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  I   HL  +  IEEI +A  +  + + K G +    DD   E + +  +    
Sbjct: 179 FIGIILNIDADHLDYYKDIEEIQNAFIKFGKLIPKEGYLVCCADDRRMEKIISNVNC--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGI 302
             + S+G  +  D   +      E  ++ EV    K    +     G H   N L ++ +
Sbjct: 236 -NVMSYGI-ETGDITAKNICFDKEGRAFFEVYKSDKKLFSLNLSVPGEHNILNALASISV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             IL   VD  I  L  F   +G  +R+     +    +ID+ Y  +P  +KA ++    
Sbjct: 294 SLILNISVDNIINGLKSF---KGTHRRFEIKGQRKGVVVIDD-YAHHPTEIKATLNAAKN 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVL 412
                  R I V          + S   +     +  N+  + LS          G    
Sbjct: 350 YP---HKRIICVF--QPHTFSRTISLFKEF--TAAFDNVDELILSDIFPAREKDTGEISS 402

Query: 413 AL--KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           ++  +  + R +     +  D +  ++ + L +GDV++   +   
Sbjct: 403 SMLCEQIIKRGVKCRNIKDFDSIVQYLNNILTEGDVLLTIGAGDV 447


>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 515

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 161/466 (34%), Gaps = 53/466 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMVAS 77
            +  + +DSR++     F AIKG   DG  +I HA++ GA  V++            + +
Sbjct: 34  VITALQLDSRNVTVGNLFIAIKGHKTDGRLYIKHAIKNGAVAVLLESTNNDNFLAQNIVN 93

Query: 78  IGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
             S  +P+     +  A++ +             +I +TG+ GKTT   +L   +  + +
Sbjct: 94  NVSSCVPIINFYKLNQAVSSIAGRFYGHPSRNLNLIGVTGTNGKTTISHLLANWVELLGE 153

Query: 136 TYACIGSYNNHIGVPLTLARMPV----DVDFGI----------FELGMSHLGEIRFLTHL 181
             A +G+    +   + ++        D    +            + +S  G  ++    
Sbjct: 154 KSAVMGTIGYGMIGSMCVSNCTTFSAIDTQRILNQFIQSGIKFVAMEVSSHGLDQYRVDA 213

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKA 237
           +   +A+ + +   HL     I +   AK  +F  L  T    +N DD     +   L  
Sbjct: 214 LYFDVAIFSNLTSDHLDYHGDINKYIMAKWRLFSELCVTNY-VINVDDYIGYEWLSYLPN 272

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +  F K +    +L K       + +       +  +    +G     N+L
Sbjct: 273 SVAVTIQDNLPKFWKGEW--IKLVKANYFVYGTDVFFHSSWGNGIIRSQLLGECNVSNLL 330

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + LG + +L   +   +       P  GR ++++        T+I + Y   P +++  +
Sbjct: 331 LALGALLVLGYPLMVLLSIADQLKPICGRLEKFKSF---NKPTIIVD-YAHTPDALEKIL 386

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L       +G+   V G     G   +     +  V   Y+  +V ++  +    +++
Sbjct: 387 RFLGA-QLCKKGKLWCVFGC---GGNRDKLKRSRMGIVAERYS-DYVVITDDNPRT-ENS 440

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVD----------GDVVVV--KS 451
                 +            I++ +             D +++  K 
Sbjct: 441 QSIIDDIILKIKHSEKITIIKNRVQAIETAICQADSNDFILIAGKG 486


>gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
 gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
          Length = 480

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 163/417 (39%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + +N   V     L IPV     +L  L +             IAI G+ GKTTT  M
Sbjct: 87  SAIDINNPEVQQAKRLKIPVIHRVKILSELMRYKYG---------IAIAGTHGKTTTVSM 137

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           LT     + +  T+   G     I      AR+    DF I E   S    +R     + 
Sbjct: 138 LTNIYVEAGLDPTFVNGG----IIRSQGVSARLGYGNDF-IAESDESDKSFLR-----LC 187

Query: 184 PHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +AVIT I   H++      E +     +  + L   G   +  DD     +  + +  
Sbjct: 188 PVVAVITNIDTDHMNTYHQNFEYLQEVFIKFLDKLPMYGYAVVCIDDPVVRKILPRIN-- 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLG 301
             + I ++G SK+A   + K+ Q  E+S   + ++  K ++VV +  GYH A N   ++ 
Sbjct: 246 --RKIITYGFSKDATLCIVKYYQYREKSNFTILIKNNKELQVVLNTPGYHNALNAAASIA 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAA 356
           +           +K++S F     R +            +    ++ + Y  +PA +++ 
Sbjct: 304 VAIEEGIRDTVILKSMSNFTGTNRRFEFLGNYPLNIINGRVGKVMVIDDYGHHPAELRST 363

Query: 357 ISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGF 409
           I  +   +   + R + V          EL  +F       D+  +L +Y+     + G 
Sbjct: 364 IIAIR--TGWSDHRLVMVFQPHRFTRTHELYDNFVRVLSTVDVLLMLDIYSAGEQPIMGI 421

Query: 410 HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  +L D++ +   V   + +    L  F+ + L D D+++++ + +     ++  L
Sbjct: 422 NAQSLCDSILKYAKVQPIFVQNECFLLKFLMNLLRDKDLLLIQGAGTI--SEIVKAL 476


>gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 157/458 (34%), Gaps = 44/458 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V G+++DSR++ P + FFA+ G   DG  FI  A+       V      A  G 
Sbjct: 21  GAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFIAAAIA---AGAVAVAGDHAPDGE 77

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L++P   + +   AL   A     R   TI A+TG+ GKT+           +    A I
Sbjct: 78  LAVPFVPLGNPRRALALAAARFYSRQPRTIAAVTGTSGKTSVAAFTRHIWQRLGHAAASI 137

Query: 141 GSYN-----------NHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184
           G+                  P+ L R   +     V     E     L + R     VR 
Sbjct: 138 GTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAGEGVTHLALEASSHGLDQFRL--DGVRV 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALG 243
                T ++  H+     +    +AK  +F  L    G   ++ D      +   + A G
Sbjct: 196 AAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVIDGGAAVISADHDCSAQVIDAARARG 255

Query: 244 IKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           ++ + + G++ +A    +L +         + ++  G+   V    +G    +N L+  G
Sbjct: 256 LR-LITVGRNGDAGEGIRLIEASIDGFAQKLTIEHAGRRTAVHLPLVGEFQIENALVAAG 314

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V     D   A  AL       GR         +G    +D  Y   P ++  A+  L 
Sbjct: 315 LVIGAGGDPAAAFAALDHLEGAPGRLDF--VGERRGAPVFVD--YAHKPDALAKALQALR 370

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LK 415
              P+ + + + V G     G    +    L   ++  N   + ++  +  +        
Sbjct: 371 ---PYAKRKLVVVFG----AGGDRDAGKRPLMGAIAAGNADSIIVTDDNPRSEDPAAIRA 423

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L  +                 ++L  GD +++  K 
Sbjct: 424 AILAAAPGAREIGDRAEAIRTAIAALAPGDALLIAGKG 461


>gi|296269387|ref|YP_003652019.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
 gi|296092174|gb|ADG88126.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
          Length = 472

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 158/454 (34%), Gaps = 50/454 (11%)

Query: 47  KGPHYDGHDFILHAV-----QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN----- 96
           +G    G D    AV     + GA + + +           +    + D    L      
Sbjct: 38  RGVRVSGSDVRDSAVLAELRELGATVHIGHAAGNVGDVDTVVVSTAIRDSNPELQEARRR 97

Query: 97  ------KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
                 + A  A +    T IA+ G+ GKTTT  MLT+AL             +    V 
Sbjct: 98  NLRVIPRAAALAAVMEGRTGIAVAGTHGKTTTTSMLTVALQKCGA--------DPSYCVG 149

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             LA   +  D G  +L ++   E      ++RP IA++T +   HL N+  +  +  + 
Sbjct: 150 GLLATTGLGADDGAGDLFVAEADESDGSFLMLRPAIAIVTNVEADHLDNYGDVRAVHESF 209

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A   E +     + L  DD     L A +   G+ T+ ++G+S  AD++           
Sbjct: 210 ARFVERV--GSLLVLCADDPGSAALAAPARERGL-TVVTYGESAGADYRTVDVVPEGLGV 266

Query: 271 WMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              V       G  + V     G H A N    + +   L   +      L+ F   +  
Sbjct: 267 EFAVAAGSPGPGWPLRVRLAVPGRHNALNATAVIAVADRLGLPLGEVAAGLAAFGGAK-- 324

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R+      G   +  +SY  +P  + A +    +++    GR IAV      +   ++
Sbjct: 325 -RRFEAKGEAGGVAVF-DSYAHHPTELTADLRAAREVNAG-RGRVIAVF--QPHLYSRTR 379

Query: 387 SFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLF 436
            F               VL +Y        G     + + +P  +  V Y+   + +   
Sbjct: 380 FFADAFGAALGLADEVIVLDVYGAREDPEPGVTGALIAERVPLPADRVVYAPDRESVPAL 439

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +      GD+V+   +       L   ++EE  A
Sbjct: 440 VAGRARPGDIVLTMGAGDV--TELGPRIVEELAA 471


>gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
 gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
          Length = 520

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 39/378 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDG-------HDFILHAVQKGAGLVVVNTDMVASIG 79
            +   +DSR I   + F  +K    D        + +++      A ++     +   + 
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLD 100

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKK 135
            + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +   
Sbjct: 101 GIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGI 160

Query: 136 TYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + A +G              +    + +  T           +  L  S  G  ++    
Sbjct: 161 SSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQG 220

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKS 239
           V    A+ T ++  HL   + +     AKA++F+           +N DD          
Sbjct: 221 VPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF----D 276

Query: 240 HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I  + + K NADF  +  +   +   +EVQ     M  +   +G     N+L 
Sbjct: 277 YETADFQIIGYSQQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           ++   + L      A    ++    +G   R + A +Q    +ID  Y   P ++K    
Sbjct: 337 SMAAFTALN--PARAADLPNLITQLQGARGRMQRASSQTGAFIID--YAHTPDALK---Q 389

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS +  H  GR IAV G
Sbjct: 390 VLSSLRRHCTGRLIAVFG 407


>gi|146342497|ref|YP_001207545.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. ORS278]
 gi|166222960|sp|A4YZK2|MURC_BRASO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146195303|emb|CAL79328.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Bradyrhizobium sp. ORS278]
          Length = 467

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 142/417 (34%), Gaps = 53/417 (12%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  AGADVVVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    ++ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGGLDPTVIN--GGIINAYGTNARLGGG-EWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   E +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFEAVQDAFRAFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G +  AD +L         S  +V  + +         ++V    G
Sbjct: 228 GKIE---DRRIITYGVNPQADVRLVDLTPMGGGSSFKVVFRDRKSGATHEISDIVLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    +   KA+  F   +   +R+         T+ID+ Y  +
Sbjct: 285 RHNASNATAAIAVARELGLSDEAIRKAIGGFGGVK---RRFTRTGEWNGVTVIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYN 400
           P  + A +    +      G+ +AV+          QS   +     +         +Y 
Sbjct: 341 PVEIAAVLKAARE---SSNGKVVAVV--QPHRYTRLQSLFEEFCTCFNDADAVVVADVYP 395

Query: 401 ISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                + G         L    H  V        L   ++     GD+VV   + + 
Sbjct: 396 AGEAPIEGIDRDHFVLGLRAHGHRDVLPLPKAADLAGIVKDLAKPGDLVVCLGAGNI 452


>gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
 gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
          Length = 481

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 147/452 (32%), Gaps = 31/452 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           + P+   +GI+ DSR++     F A+ G   DG DFI  AV +GA  V+  +      G 
Sbjct: 15  LPPETVFSGITADSRAVRKGMIFAALPGARADGRDFIAQAVAQGAAAVLAPSGTRWPPGV 74

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
              P+    +    L ++A         TI+ +TG+ GKT+T + +     +  +  A +
Sbjct: 75  PPRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAVASGRPAASL 134

Query: 141 GSYN-----------NHIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+                  P+TL            G   L  S  G  +F  H +R   
Sbjct: 135 GTLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQFRLHGLRLAA 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD--DSFFELLKAKSHALG 243
              + +   HL     +     AK  +F+  L          D        L+  + A  
Sbjct: 195 GGFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAALRDIAQARR 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  + + G   +  F LR          + +   G S E+     G     N L+  G+ 
Sbjct: 255 L-DLATVGAGGDL-FDLRGIIATPSSQVLTIACGGVSREIELPLPGRFQVDNALLAAGLA 312

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     +  L    P  GR +R     N     +    Y   P +++  +  L   
Sbjct: 313 RAAGVS--DPLDRLPGLAPVRGRLERAAVLPNGAAAYV---DYAHTPDALERLLMALR-- 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRS 421
            PH  GR + V G   +     +    D+A  L+   I       S          L   
Sbjct: 366 -PHAAGRLVLVFGAGGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAAC 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                             +L  GDV+ V  K 
Sbjct: 425 PGAREIGDRRAAIAAGLDALRAGDVLAVAGKG 456


>gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 471

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 160/455 (35%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A++G   DG  +I  A+ +G   ++      A  G +     +PV 
Sbjct: 2   TLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L      +   +  ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +       G   +N DD       AK     +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIVNADDEVGRRWLAKLPD-AVAVSMED 239

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + ++        E+    +G     N+L+ L  +  L 
Sbjct: 240 HINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  GR + +    +      +   Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCGRMEVF----SAPGKPAVVVDYAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+   V G   +  +  +     +AE  +      V ++  +         + D L   
Sbjct: 353 SGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----DIVVVTDDNPRTEEPRAIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +    ++ M+G    + +++    + DVV+V  K 
Sbjct: 409 LDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 443


>gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
 gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
          Length = 471

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++      G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + +         E+  H +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCG---RMEVFTALGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVH 425
            G+   V G   +  +  +     +AE  +   +       +      + D L   +   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 426 YSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +++ M+G    +  ++    + DVV+V  K 
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|325663714|ref|ZP_08152118.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470207|gb|EGC73440.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 153/402 (38%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +     +     IP+    ++LG L        + +  T IA++G+ GKTTT  M
Sbjct: 77  AAVHADNPEFIAAKEHQIPMLTRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G  +  I V   L  +  ++  G  ++ ++   E         P 
Sbjct: 129 ISHIL--------LAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFLPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  +   H+  F  +++I  +       L   GT+ +N + S +E + A  +     
Sbjct: 181 IGIILNVEEDHMDFFKDLDDIRHSFHRFAALLPNDGTLIINSEISQYEQIIAGLNC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G   +AD+  +  +  +    S+  +    K   +     G H   N L  +   
Sbjct: 237 NVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNVSNALSAIITG 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           ++L  D++   K L  F    G  +R+         T+ID+ Y  +P  ++A +S     
Sbjct: 297 TLLGIDLEKIKKGLLSFT---GTDRRFEYKGTLDGVTIIDD-YAHHPTEIEATLSAAQHY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A   +  +   L+ + H+ LA++ +      +   G    AL
Sbjct: 353 PHREIWCIFQPHTYTRTKAFFHEFAQ--ALTLADHVILADIYAARETDTL---GMSSEAL 407

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            DA+        Y  + D +  F++   + GD+++   +   
Sbjct: 408 SDAIRELGGDSCYFSSFDEIKNFVKEKCIHGDMLITMGAGDV 449


>gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sonnei Ss046]
 gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046]
          Length = 497

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 161/478 (33%), Gaps = 45/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSV 117
             ++                   +PV  +  +   L+ L             ++ +TG+ 
Sbjct: 61  AAIIAEAKAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------- 166
           GKTTT ++L      + +T A +G+  N +   +            +             
Sbjct: 121 GKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGAT 180

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G  
Sbjct: 181 FCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQA 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD       AK     +        + N      +          + +        
Sbjct: 240 IINADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGD 298

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 299 GEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPT 355

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 356 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVA 411

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 469


>gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 495

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 155/482 (32%), Gaps = 61/482 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A+    +   P+  +  +++DSR  A  + F A+ G   DG  FI  A+ +G   ++ 
Sbjct: 6   LRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAIIA 65

Query: 71  NTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----- 121
             D VA  G +     +PV  +  +   L+ LA     +    +  I  +          
Sbjct: 66  EADGVAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTTTQ 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFELGMS 170
                   L         +G+       P             + R   D    +  + +S
Sbjct: 126 LLAQWAQLLGERGAVMGTVGNGLLGQVYPSENTTGSAVDVQHMLRNLADEGATLVAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    +V T ++  HL     + +   AK  +F     +G   +N DD 
Sbjct: 186 SHGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFS-THHSGEKIINADDE 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNAD----------FQLRKWKQCSEQSWMEVQLQGKS 280
             +   AK       T+        AD             R+       + +++      
Sbjct: 245 VGQRWLAKLPDAVAVTL--------ADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGC 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    +G     N+L+ L  +  L   ++          P  GR + ++ A   G  T
Sbjct: 297 ATLHSRLMGEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAA---GKPT 353

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A   L     H +G+   + G   +     +     +AE  +   
Sbjct: 354 VVVD-YAHTPDALEKA---LLAARLHCQGQLWCLFGCGGDRDTGKRPLMGAIAEQYA--- 406

Query: 401 ISHVWLSGFHVLA------LKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +  +      + D L   +    V                    DV++V  
Sbjct: 407 -DRVVVTDDNPRSEEPRTIINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           XB6B4]
          Length = 516

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 157/505 (31%), Gaps = 76/505 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+     S+       +  I   S  +     F  IKG + DGHD+I+ AV+ G
Sbjct: 1   MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60

Query: 65  AGLVVVNTDMVASIGSLSI-------------------PVFGVDDVLGALNKLAVAARLR 105
           A  VVV+   + ++                         V GV D   AL +++ A    
Sbjct: 61  AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120

Query: 106 SKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------G 148
               +  I ITG+ GKTTT  +    L         +G+   +                 
Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180

Query: 149 VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEE 205
           +   LA+M  +     + E+    +   R     +   I V   I P H+     +   E
Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQR--VEGIFFDIGVFLNIEPDHIGPGEHASFAE 238

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQ 259
               K+ +    +      +N DD   E +    H   I+T    G++      + AD  
Sbjct: 239 YLYCKSRLLRQCQAG---IVNRDDRNTEKILF-GHTCDIETFSVLGENGVDAPGQKADIV 294

Query: 260 LRKWKQCSEQSWM--EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             +     ++  +       GK  E +    G     N L  + +        D    A 
Sbjct: 295 AERITFSMKEGRLYSHFFTDGKE-EFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDA- 352

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                +   G+     ++  F  L+D  Y  N  S++  +  L    P   GR + + G 
Sbjct: 353 --LQRQTVPGRCENVRISDKFVFLVD--YAHNEMSLRNLLGTLRGFDP---GRLVVIFGC 405

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVH-----YSE 428
               G  S+     + E         +  S          + D +   I           
Sbjct: 406 ---GGNRSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIA 462

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +      +GD++V+  K 
Sbjct: 463 DRRAAVAYAFDHAREGDIIVLAGKG 487


>gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
 gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
          Length = 489

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 156/453 (34%), Gaps = 51/453 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+GI+ DSR++ P   F  +         F+  AV+ GA  +V  +         +  + 
Sbjct: 27  VSGITADSRNVKPGFVFVCL---SEVAKKFVSDAVKAGARFIVAGSAEALPRVDNAQIII 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                       +   R R    + A+TG+ GKT+  +           T A IG+    
Sbjct: 84  FPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASIGTLGTA 143

Query: 147 IGVPLTLARMPVDVDFGIFELG-----------------MSHLGEIRFLTHLVRPHIAVI 189
           +G  +T     +       EL                   S  G  +   + V+  +A  
Sbjct: 144 VGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVKVSVAAF 203

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  H     G+E+  +AK ++F E L   G   LN D   +  L+     +G +   
Sbjct: 204 TNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELR---RLVGSRNTI 260

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           ++G +   D +L + K  +    + V++ GK   +     +G     N+L  L IV+   
Sbjct: 261 TYGINVG-DVRLTRLKSSTLGHNVAVEICGKVVYDGAFPVLGKFQIPNLLCALAIVTASG 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A         S     +    R R  L  G   +    Y   PA+++ A++ L       
Sbjct: 320 A-------RCSDIPIDKLVSPRGRMELIGGRVIV---DYAHTPAALEHALTSLK--WHGF 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL-KDALPRS 421
             + + V G     G+  +     +  V   Y    + ++       +  A+ K+ L   
Sbjct: 368 PQKIVLVFGC---GGDRDREKRGAMGMVAGKY-ADVIIVTDDNPRNENPEAIRKEILSHC 423

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
                         +  +  V  D +++   K 
Sbjct: 424 ERAIEIPNRSDAIHYAVNFAVRNDHMLLIAGKG 456


>gi|166033152|ref|ZP_02235981.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
 gi|166027509|gb|EDR46266.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 36/401 (8%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEML 126
           VVV T  +            V   L  L +  +  +L +   I IA++G+ GKTTT  M+
Sbjct: 128 VVVYTAAIHKDNEEY--QAAVQKGLPMLTRAELLGQLMTNYDIPIAVSGTHGKTTTTSMI 185

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L          G  +  I V   L  +  ++  G  E+ ++   E         P I
Sbjct: 186 SHIL--------LAGEMDPTISVGGILKAIGGNIRVGNSEIFVTEACEYTNSFLSFFPKI 237

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +VI  I   HL  F  +E+I ++     + L K GT+ +N D    + L   +  L  K 
Sbjct: 238 SVILNIDEDHLDFFKDLEDIRNSFHRFAKLLPKDGTLVINGD---IDRLDEITGDLDCKL 294

Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
           + ++G + +A +            +  ++   G+ ++ +   + G H   N L  L +  
Sbjct: 295 V-TYGTNPSATYHAANVTHDELGEASFDLVKNGEFVDRISLSVSGDHNVSNALAALAVAD 353

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
           +L  +V  A K L  FH   G  +R+         T+ID+ Y  +P  + A ++  +   
Sbjct: 354 LLDVNVSVAKKGLKEFH---GTDRRFEYKGETNGVTIIDD-YAHHPTEIAATLTAATHYP 409

Query: 363 -------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+  +  E   LS + H+ +A++ +      +   G     + 
Sbjct: 410 HREIWCIFQPHTYTRTKALFPEFVE--ALSHTDHVIMADIYAARETDTL---GVSSKQIA 464

Query: 416 DALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           D L  +    +Y  + + +  F  +    GDV++   +   
Sbjct: 465 DELKAKGCDAYYFPSFEEIENFCLTHCQKGDVLITMGAGDV 505


>gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 515

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 164/497 (32%), Gaps = 65/497 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D L+ ++   I       V+ +  DSR  AP   F  + G   D H F+   ++ G
Sbjct: 1   MVLRDWLKGLEYECIRGSLDTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFVPDVLKAG 60

Query: 65  AGLVVVNTDMVA------------SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATI 110
             ++V    +                    + V    D   AL  L+ A      +K   
Sbjct: 61  VRVLVTERGIEEELKKAKEEGGLTEEDLSEVTVLQTGDGRHALALLSAARFGYPATKMVT 120

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------M 156
           I +TG+ GKTTT  M+   L +  K    IG+    IG  +T                  
Sbjct: 121 IGVTGTKGKTTTTHMIKTILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQLHQAFAQ 180

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIF 214
             D       + +S  G        +     + T I+P H+     +   E    K+ + 
Sbjct: 181 MADSGCQYMIMEVSSQGIKMHRVDGITFDYGIFTNISPDHIGPDEHADFAEYLYCKSRLL 240

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-----------NADFQLRKW 263
                     +N +DS FE +   +       +Y++  ++            ADF     
Sbjct: 241 NMCR---IGLVNRNDSHFEDIIKDADC----ELYTYSVTEERGGLHGSGESGADFTASDV 293

Query: 264 KQCSEQSWM--EVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  S+  ++  E  ++G+  M+V     G     N L  + + S L    ++  +AL   
Sbjct: 294 RYVSQPDFVGTEFDVKGRYEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALEHI 353

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                   R          T++ + Y  N  SM++ ++ L Q  P    R + V G    
Sbjct: 354 RVNG----RMEIVHTSARCTVLVD-YAHNAVSMESLLTTLRQYHPK---RLVVVFGCGGN 405

Query: 381 MGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIHVHYSETMD--GLF 434
             +  +    ++   L+  +I       +     ++A            + E  D     
Sbjct: 406 RSKDRRYTMGEIGGRLADLSIVTADNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAI 465

Query: 435 LFIQSSLVDGDVVVVKS 451
            +  S  + GD++ V  
Sbjct: 466 EYSISHAMPGDMIAVIG 482


>gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
 gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
          Length = 461

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 151/420 (35%), Gaps = 46/420 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  + +             IA+ G+ GKTTT  M
Sbjct: 75  SAIKPDNPELLAAREREIPVIRRGELLAWVMRDYRG---------IAVAGAHGKTTTTAM 125

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L +        +G Y   I     L +       G + +  +   +  FL  L+ P
Sbjct: 126 VANVLLAGGLDPTVLVGGYWPLIEGNCRLGK-------GSYFVTEADESDASFL--LLTP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T I   HL  +  +E +  A       +E  GT  +  D      L    +    
Sbjct: 177 MLAVVTNIENDHLDYYGNLEALLGAFRTFLARIEPPGTAVVCLDSPLVRQLIGVLNI--- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
             + ++G  + AD+ L+K +     S   +  +G+ + ++  +  G H   N    + + 
Sbjct: 234 -PVITYGMEEGADYILKKVELSGSSSSALLYYRGRLLGQLKLNLPGKHNLLNAAAAVAVG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L      A +AL+ F       +R+      G   ++D+ Y  +P  ++A I    QI
Sbjct: 293 AYLGVPFAVASQALAEFRSVR---RRFEFLGEAGGVMVVDD-YAHHPTEVQATIEAARQI 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSGF--HVLALKDAL 418
                GR + V          +   + +         +  +  ++ +G         + +
Sbjct: 349 ---HRGRLVVVF--QPHRYTRTALLYPEFGRSFFGADVLVLDEIYPAGEPPLPGVTAELI 403

Query: 419 PRSIHVHYSETM------DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            ++   H  +         G   F++  +  GD+V+   +     YR+   LLE     +
Sbjct: 404 AKACQDHCPDLPLYRLPSTGKAAFLKEIVSPGDLVLTMGAGDI--YRVGKELLEILKGAE 461


>gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
 gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
          Length = 581

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 150/457 (32%), Gaps = 61/457 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
              +QG   G      V GIS+DSR + PQ+ + A+ G    G  F   A++ GA  ++ 
Sbjct: 49  ASGVQGSESG--ESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILT 106

Query: 71  NTDMVASIGSLSIPVFGVDDVLGA---LNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +      +G   +PV   +++      L  L   +         A+TG+ GKTT+  ML 
Sbjct: 107 DAAGAQLLGEAPVPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLE 166

Query: 128 IALSS-IKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMS 170
               + +      IG+    I      ++M                   V     E+   
Sbjct: 167 SVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSH 226

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R     V+  +A  T +   HL     +E    +KA++F          +  DD 
Sbjct: 227 AIDYHR--VDGVKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLFTPERAE-LAVITADDE 283

Query: 231 FFELL-KAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQ 277
           + E +  A    +G + ++    ++ A            D+ + K ++        V   
Sbjct: 284 WGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANG 343

Query: 278 -GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD------TAIKALSVFHPKEGRGKRY 330
            G+S+E            N  +   +  + T   +            ++     GR +  
Sbjct: 344 VGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLI 403

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A +          +  NP  +  A+     +   G+G+ + V G     GE  Q    
Sbjct: 404 SLAPHA------IVDFAHNPDGLTRALEA---MDRPGDGKVMIVFGA---TGERDQLKRP 451

Query: 391 DLAEVLSLYNISHVWL----SGFHVLALKDALPRSIH 423
            +  + + Y    V       G     ++ A+     
Sbjct: 452 IMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQ 488


>gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 4343-70]
 gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-218]
          Length = 495

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 165/476 (34%), Gaps = 43/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DS   A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSCVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +        + N      +  +       + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   + 
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVV 411

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
                 +      + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 412 TDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
 gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
          Length = 506

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 167/479 (34%), Gaps = 49/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L        +    +G V G++  ++S+ P + F A+ G    G +FI  A ++GA 
Sbjct: 15  ISELADVAGAVVLAGDERGRVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAA 74

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            V+ +    A +G      V        +L  L         ++ T++ +TG+ GKTTT 
Sbjct: 75  AVLTDEAGAACLGGTDAMAVLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKTTTT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169
            +L     +  +    IG+    IG                 +L  +  +    +  + +
Sbjct: 135 YLLESLFRAAGRATGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVLMEV 194

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNY 227
           S            R      T ++  HL +   +E    AKA++F+           +  
Sbjct: 195 SSHALDFGRVDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAVICV 254

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVH 285
           DDS+ + +   +   G  T+ +    + AD+ + + ++    +   +    + +      
Sbjct: 255 DDSWGQRMSRVAR--GSVTVAT--GDEAADWAVLERREDELGAQQVLVRGPRERQFAFRL 310

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H A N ++ +G+       V   +          GR +R +    Q F  ++D  
Sbjct: 311 GLLGRHNAANAVLAVGLAEATGVRVTEELVRGWADIAVPGRLERVQA--GQDFLAVVD-- 366

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P S+   +  L +   H  GR   V+G     G+  Q     + EV S      V 
Sbjct: 367 YAHKPESLAKVLQALRE---HTAGRIAVVVGA---GGDRDQGKRPMMGEV-SASGAELVV 419

Query: 406 LSGFHVLALKDALPRS-----------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +   A  R+             V    +              GD V+V  K 
Sbjct: 420 VTDDNPRSEDPAAIRAQVLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKG 478


>gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 485

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 153/452 (33%), Gaps = 44/452 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+++DSR++ P + FFA+ G   DG  F+  A++      V         G L++P  
Sbjct: 22  VGGLAVDSRAVKPGDVFFALAGAKTDGARFVAAAIE---AGAVAVAGDHPPAGDLAVPFV 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            + +   AL   A     +   TI A+TG+ GKT+           +    A IG+    
Sbjct: 79  RLTNPRRALALAAARMFPQQPQTIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGTIGLV 138

Query: 145 ---------NHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         P+ L R         V     E     L + R     VR      T
Sbjct: 139 TPTRSVYGSLTTPDPIALHRSLDAIAREGVTHLALEASSHGLDQFRL--DGVRVAAGGFT 196

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++  H+     +    +AK  +F  L    G   ++ D      +   + A G++ + S
Sbjct: 197 NLSRDHMDYHPDVAHYLNAKLRLFRDLVVDGGAAVISADHDCSAEVIDAARARGLR-LIS 255

Query: 250 FGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            G++ +A   +R      +     + +   G++ +V    +G    +N L+  G+V    
Sbjct: 256 VGRNGDAGAGIRLIAAAVDGFAQRLTLDHAGRNYQVHLPLVGEFQIENALVAAGLVIGTG 315

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D      AL       G   R      +    +  + Y   P ++  ++  L    P+ 
Sbjct: 316 GDPAAVFAALDHLEGAPG---RLELVGERNGAPVFVD-YAHKPDALAKSLQALR---PYA 368

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA------LPRS 421
           + + + V G     G    +    L   ++  +   V ++  +      A      L  +
Sbjct: 369 KRKLVVVFG----AGGDRDAGKRPLMGAIAAESADAVIVTDDNPRREDPATIRAAILAAA 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GD +V+  K 
Sbjct: 425 PGAREIGDRAEAIRTAIGELQPGDALVIAGKG 456


>gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate
           ligase mure [Rhodococcus equi 103S]
 gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Rhodococcus equi 103S]
          Length = 547

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 165/502 (32%), Gaps = 66/502 (13%)

Query: 2   NPLWT-FHDLLQAIQGH--SIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           NP +T   DL   I      IG      G V G+ + ++++   + F A+ G H  G +F
Sbjct: 22  NPPFTALTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEF 81

Query: 57  ILHAVQKGAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKA 108
           +  A+  GA  V+ +   V          + S+PV    D    L + +           
Sbjct: 82  VGVAIAAGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHM 141

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV---------- 158
            II ITG+ GKTTT  ++   L++   T   +G+    +      + +            
Sbjct: 142 QIIGITGTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALF 201

Query: 159 ------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                  +D  + E+    L   R     VR  I   T ++  HL      ++  +AK+ 
Sbjct: 202 AAMRERGIDTVVMEVSSHALALGR--VDGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSR 259

Query: 213 IFEGLEK--TGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +F            +  DD +   +      +H      + +      AD+         
Sbjct: 260 LFAADSAVCAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSD 319

Query: 268 EQ-SWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                  +    G          G++   N  +   I     ADVD A+   +     + 
Sbjct: 320 TGNQVFTLTGPDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAAL---AGIANVDV 376

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+  R    Q F  ++D  Y   PA+++A I+ L       +GR   V+G   +     
Sbjct: 377 PGRVERVERGQDFLAVVD--YAHKPAALEAVIATLRG---QTKGRIAVVVGAGGDRDRGK 431

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFH------------VLALKDALPRSIHVHYSE--TMD 431
           +    +            + ++  +            +LA   A+P +      E     
Sbjct: 432 RPLMGEAG----ARGADLLVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGAVREIGDRA 487

Query: 432 GLFLFIQSSLVDGDVVVV--KS 451
                       GDVV+V  K 
Sbjct: 488 EAIAAAVRWARTGDVVLVAGKG 509


>gi|303230738|ref|ZP_07317485.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514498|gb|EFL56493.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 460

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 142/372 (38%), Gaps = 38/372 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+   L     +    IG   +++     L +     ++ + E   
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEGQMEPTVIIGGEVDYLKGSSCLGKG----EYSVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     +RP + VIT I   H+ ++  +E + +A  +  E L   G   +  D+
Sbjct: 164 SDGSFLK-----LRPKMIVITNIEDDHMDHYKTMENLLNAFCQFVETLPVDGKAVVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                + +K      +   ++G   + D+  +           +V  +G+++  V     
Sbjct: 219 DNIRYVMSKVE----RQFITYGLEDSNDYVAKNIHYEDSSLVYDVVHKGETLSRVSLRVP 274

Query: 289 GYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N L +  +        V + +KAL  F    G  +R+    +     ++D+ Y 
Sbjct: 275 GNHNVLNSLASFIVAHECCHVPVPSIVKALGKF---IGAKRRFETKGHVAGVWVVDD-YA 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  +KA +    ++  H   R I V          +     + A          +  +
Sbjct: 331 HHPTEIKATLKAAKELEKH---RVICVF--QPHRYSRTSLLKDEFATAFTSADEIYMTDI 385

Query: 399 YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     +SG     + + +      HV+Y E ++ L   +   +   D+V+   + S  
Sbjct: 386 YSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKVVRPNDLVITMGAGSIN 445

Query: 457 FY--RLINLLLE 466
            Y  +L+ LL E
Sbjct: 446 QYGPKLLALLEE 457


>gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 471

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 161/455 (35%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A++G   DG  +I  A+ +G   ++      A  G +     +PV 
Sbjct: 2   TLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L      +   +  ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +       G   +N DD       AK       ++   
Sbjct: 182 NLSRDHLDYHGDMEHYEAAK-WLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +          + ++        E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  GR + +    +      +   Y   P +++ A+        H 
Sbjct: 300 YPLADLLKTAARLQPVCGRMEVF----SAPGKPAVVVDYAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+   V G   +  +  +     +AE  +      V ++  +         + D L   
Sbjct: 353 SGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----DIVVVTDDNPRTEEPRAIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +    ++ M+G    + +++    + DVV+V  K 
Sbjct: 409 LDAGQAKVMEGRAKAVTNAVMQAKENDVVLVAGKG 443


>gi|302877580|ref|YP_003846144.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
 gi|302580369|gb|ADL54380.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
          Length = 466

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 145/407 (35%), Gaps = 42/407 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +  +  IPV     +L  L +L            IA+ G+ GKTTT  + 
Sbjct: 73  AVSQDNPEVVAARARHIPVVPRAMMLAELMRLRQG---------IAVAGTHGKTTTTSLT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     +         +    T A++    +F + E   S    +      ++P +
Sbjct: 124 ASVLARGG--FDPTFVIGGKLNSSGTNAKLGTG-EFIVVEADESDASFL-----YLQPIL 175

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+  +     ++  A  +  E L   G   +  DD+    +  +      K
Sbjct: 176 AVVTNIDEDHMETYGHDFAKLKQAFIDFIEHLPFYGRAMVCVDDANIREILPRV----TK 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMAQNMLMTLG 301
            + ++G S++A  +    +    +     Q +     + + +  +  G H   N L  + 
Sbjct: 232 PVTTYGFSEDAQIRAINVRHEGGKMCFTAQCRQNGTPRDLVITLNLPGRHNVLNALAAIA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVL 360
           I   +    D  I AL  F     R +RY   AL +G    + + Y  +P  M A    L
Sbjct: 292 IALEIGVADDAIIAALDEFEGVGRRFQRYGEIALPEGGRFTLIDDYGHHPVEMAA---TL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA 417
           + +     GRR  VL         ++    D  ++L   +    + V+ +G   L   D 
Sbjct: 349 AAVRGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKILCGVDALLLAEVYAAGETRLVAADG 407

Query: 418 --------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                   L       + E +  +   I     DGDVVV   + S G
Sbjct: 408 RAMMHALRLAGQSEAIFVEHIADMPQSIMQWARDGDVVVTMGAGSIG 454


>gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           M50/1]
          Length = 516

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 157/505 (31%), Gaps = 76/505 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+     S+       +  I   S  +     F  IKG + DGHD+I+ AV+ G
Sbjct: 1   MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60

Query: 65  AGLVVVNTDMVASIGSLSI-------------------PVFGVDDVLGALNKLAVAARLR 105
           A  VVV+   + ++                         V GV D   AL +++ A    
Sbjct: 61  AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120

Query: 106 SKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------G 148
               +  I ITG+ GKTTT  +    L         +G+   +                 
Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180

Query: 149 VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEE 205
           +   LA+M  +     + E+    +   R     +   I V   I P H+     +   E
Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQR--VEGIFFDIGVFLNIEPDHIGPGEHASFAE 238

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQ 259
               K+ +    +      +N DD   E +    H   I+T    G++      + AD  
Sbjct: 239 YLYCKSRLLRQCQAG---IVNRDDRNTEKILF-GHTCDIETFSVLGENGVDAPGQKADIV 294

Query: 260 LRKWKQCSEQSWM--EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             +     ++  +       GK  E +    G     N L  + +        D    A 
Sbjct: 295 AERITFSMKEGRLYSHFFTDGKE-EFLLQIPGIFNVSNALAAILVARHFKIAQDVVKDA- 352

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                +   G+     ++  F  L+D  Y  N  S++  +  L    P   GR + + G 
Sbjct: 353 --LQRQTVPGRCENVRISDKFVFLVD--YAHNEMSLRNLLGTLRGFDP---GRLVVIFGC 405

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVH-----YSE 428
               G  S+     + E         +  S          + D +   I           
Sbjct: 406 ---GGNRSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIA 462

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +      +GD++V+  K 
Sbjct: 463 DRRAAVAYAFDHAREGDIIVLAGKG 487


>gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
 gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
          Length = 460

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 141/370 (38%), Gaps = 34/370 (9%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+   L  +       IG   +++     L +      F + E   
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEADADPTVIIGGEVDYLKGSSCLGKG----HFSVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     +RPH  VIT I   H+ ++  ++ + +A  E  E L ++G   +  D+
Sbjct: 164 SDGSFLK-----LRPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPESGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                + ++ +    +   ++G S N D+  +           +V  +G ++E +     
Sbjct: 219 ENIRYIMSRVN----RNFITYGLSDNNDYVAKNIHYVDSTLVYDVYHKGVNIERIRLRVP 274

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N L    +       +     K L  F    G  +R+    +     ++D+ Y 
Sbjct: 275 GEHNVLNSLAAFIVAHDCCGVETRIITKGLGKF---IGAKRRFETKGHVAGVWVVDD-YA 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYN 400
            +P  +KA +    ++  H   R I V           L   F     + D   +  +Y+
Sbjct: 331 HHPTEIKATLKAAKELEKH---RVICVFQPHRFTRTSLLKDEFATAFTNADEVYMTDIYS 387

Query: 401 ISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                + G     + +A+       V+Y  ++D L   +   +   D+V+   + S   Y
Sbjct: 388 SGEDPIPGIDGHTIPNAIKAATGQDVNYVPSVDDLPEVLAKVVRPNDLVITMGAGSINQY 447

Query: 459 --RLINLLLE 466
             +L+ +L E
Sbjct: 448 GPKLLTILEE 457


>gi|254362461|ref|ZP_04978569.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153094053|gb|EDN74965.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 475

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 155/432 (35%), Gaps = 48/432 (11%)

Query: 56  FILHAVQK--GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV+T        + +     IPV    ++L  + +          
Sbjct: 67  FIGHQAENIAGASVVVVSTAIDETNPEIIAAREARIPVIRRAEMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAIAGTHGKTTTTAMISMIYTEAKLD---PTFVNGGLVKSTGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T I P H+  +    E++          L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD     +  +      + + ++G S+NAD+++  ++Q   Q    V    G+ ++V+ 
Sbjct: 230 ADDETVMEIAPRV----GRQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSGERIDVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  + AL+ F     R  +    +      ++ + 
Sbjct: 286 NVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKIMLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------- 398
           Y  +P  +   I          EG+R+ ++         ++    +  +VLS        
Sbjct: 346 YGHHPTEVDVTIQAARS---GWEGKRVVMIFQ-PHRYSRTRDLFDEFVQVLSKVDALILL 401

Query: 399 --YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             Y      + G    AL  ++     V        D L   +   + DGD+++ + + S
Sbjct: 402 DVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAGS 461

Query: 455 CGFYRLINLLLE 466
               R+   L E
Sbjct: 462 V--SRISRGLAE 471


>gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 547

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 165/502 (32%), Gaps = 66/502 (13%)

Query: 2   NPLWT-FHDLLQAIQGH--SIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           NP +T   DL   I      IG      G V G+ + ++++   + F A+ G H  G +F
Sbjct: 22  NPPFTALTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEF 81

Query: 57  ILHAVQKGAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKA 108
           +  A+  GA  V+ +   V          + S+PV    D    L + +           
Sbjct: 82  VSVAIAAGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHM 141

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV---------- 158
            II ITG+ GKTTT  ++   L++   T   +G+    +      + +            
Sbjct: 142 QIIGITGTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALF 201

Query: 159 ------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                  +D  + E+    L   R     VR  I   T ++  HL      ++  +AK+ 
Sbjct: 202 AAMRERGIDTVVMEVSSHALALGR--VDGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSR 259

Query: 213 IFEGLEK--TGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +F            +  DD +   +      +H      + +      AD+         
Sbjct: 260 LFAADSAVCAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSD 319

Query: 268 EQ-SWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                  +    G          G++   N  +   I     ADVD A+   +     + 
Sbjct: 320 TGNQVFTLTGPDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAAL---AGIANVDV 376

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G+  R    Q F  ++D  Y   PA+++A I+ L       +GR   V+G   +     
Sbjct: 377 PGRVERVERGQDFLAVVD--YAHKPAALEAVIATLRG---QTKGRIAVVVGAGGDRDRGK 431

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFH------------VLALKDALPRSIHVHYSE--TMD 431
           +    +            + ++  +            +LA   A+P +      E     
Sbjct: 432 RPLMGEAG----ARGADLLVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGEVREIGDRA 487

Query: 432 GLFLFIQSSLVDGDVVVV--KS 451
                       GDVV+V  K 
Sbjct: 488 DAIAAAVRWARTGDVVLVAGKG 509


>gi|114330272|ref|YP_746494.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314677|sp|Q0AJE2|MURC_NITEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114307286|gb|ABI58529.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
          Length = 473

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 167/439 (38%), Gaps = 56/439 (12%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           H      + + A  VV++T +      +       IPV     +L  L +L         
Sbjct: 55  HTHAAENI-QSADAVVISTAIQPDNPEVIAARERRIPVVPRAMMLAELLRLHQG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IAI G+ GKTTT  ++   L+   +     IG     +     L +     +F + E
Sbjct: 108 ---IAIAGTHGKTTTTSLVASILAEAGQDPTFVIGGRLKTVDSHARLGKG----EFIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
              S    +      ++P + V+T I   H+S +      +     E  E L   G   L
Sbjct: 161 ADESDASFL-----YLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQ----GKS 280
             DD     +         K + ++G  S+NA  +    +    +      +      ++
Sbjct: 216 CADDPHVSAIIPMVS----KQVTTYGITSENAQIRATDIRHDQCKMHFCAHIGVNGSART 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGF 338
           +++  +  G H   N L  + + + L    +  +KAL+ F   + R ++Y      ++  
Sbjct: 272 LDITLNLPGKHNVLNALAAIAVGNELNIPDEAMVKALATFGGVDRRFQQYGEIRLPDRRS 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTLID+ Y  +PA + A ++      P    R + V          ++    D   VLS 
Sbjct: 332 FTLIDD-YGHHPAEIAATMAAARNAFP--GRRLVLVF--QPHRYSRTRDLFEDFVRVLSS 386

Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +    + ++ +G   +   D  +L R+I V       Y E ++ L   + + + +GDVV
Sbjct: 387 ADALLLTEIYSAGEEPIIAADSKSLVRAIRVQGKIEPIYIEHINELKSAVHTVVQEGDVV 446

Query: 448 VVKSSNSCGFYRLINLLLE 466
           ++  + S G  ++   L E
Sbjct: 447 LIMGAGSIG--KIAPGLAE 463


>gi|92116836|ref|YP_576565.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
 gi|122418259|sp|Q1QNU2|MURC_NITHX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91799730|gb|ABE62105.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
          Length = 467

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 144/414 (34%), Gaps = 49/414 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA ++VV+T +      L       IPV    ++L  L +L            +AI G+ 
Sbjct: 66  GADVLVVSTAIRRDNPELMAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGTH 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L +       I      I    T AR+    ++ + E   S    ++ 
Sbjct: 117 GKTTTTSMVAALLDAGDFDPTVIN--GGIINAYGTNARLGAG-EWMVVEADESDGTFLK- 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +A++T + P HL +F   + +  A     E +   G   +  D    + +  
Sbjct: 173 ----LPTDVAIVTNVDPEHLDHFKTFDAVQDAFRSFVENVPFYGFAVMCIDHPVVQSMVG 228

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGY 290
           +      + I ++G++  AD +L         S  +V  + +  +  H          G 
Sbjct: 229 RIE---DRRIVTYGENPQADARLVDLAPNGGGSHFKVVFRNRKTDAAHEVSDLVLPMPGR 285

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N    + +   L     T  KA++ F   +   +R+         T+ID+ Y  +P
Sbjct: 286 HNALNATAAIAVAHELGIPDATIRKAIAAFGGVK---RRFTKTGEWNGVTIIDD-YGHHP 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISH 403
             + A +    +      G+ +AV+       +  L + F       D   V  +Y    
Sbjct: 342 VEIAAVLKAARE---STGGKVVAVVQPHRYTRLQSLFEEFCTCFNDADTVVVAEVYPAGE 398

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
             ++G         L    H       +   L   I      GD VV   + + 
Sbjct: 399 APIAGIDRDHFVLGLRAHGHREVVPLQEPAALAGVIAGLAKPGDYVVCLGAGNI 452


>gi|258546154|ref|ZP_05706388.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
 gi|258518579|gb|EEV87438.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
          Length = 479

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 151/444 (34%), Gaps = 58/444 (13%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFG 87
           R  A     FF     +            K A +VV ++ +            L IPV  
Sbjct: 58  RLAAKGATLFFGHAAENV-----------KDASVVVTSSAIDPKNPEVLRARELGIPVIR 106

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             ++L  L +             IA+ G+ GKTTT  ++   L+               I
Sbjct: 107 RAEMLAELMRFRFG---------IAVAGTHGKTTTTSLIASILADAGLDP------TFVI 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
           G  LT A     +  G + +  +   +  FL   ++P ++V+T I   HL N+    + +
Sbjct: 152 GGVLTAAGSNARLGDGQYLVAEADESDASFL--HLQPMMSVVTNIDADHLENYGGSFDNL 209

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                     L   G   L  DD   + +         + + ++G S+ A+ +    +Q 
Sbjct: 210 KQGFVRFLHNLPFYGLAVLCIDDEGVQSILGDV----GRPVRTYGFSEAAEVRAVNVRQV 265

Query: 267 SEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +   +V  ++ G++  +     G H   N L    I S L          L+ F    
Sbjct: 266 GLKMHFDVVDKVSGETFPLALSMPGKHNVLNALAAFIITSELGLTRAEITAGLAQFKGVG 325

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R   +    ++     + E Y  +P  ++A +   ++      GRRI  +         
Sbjct: 326 RRFTHHGIIEHEHGRAEVFEDYGHHPNEIRAVLQAAAE---GFAGRRIFAVFQPHRFTRT 382

Query: 385 SQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGL 433
                 D AEVLS         +Y+     ++G    AL  A+     V          +
Sbjct: 383 RDCL-DDFAEVLSNCEALVLTDVYSAGEAPIAGADSRALARAIRAHGKVEPVLIADKAAI 441

Query: 434 FLFI-QSSLVDGDVVVVKSSNSCG 456
              +  + L DGDVV+   +   G
Sbjct: 442 NQQLYDNLLADGDVVIYFGAGDIG 465


>gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 471

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 164/459 (35%), Gaps = 55/459 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   +V      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L          +  +I +TG+ GKTTT +++      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMP----VDVDF----------GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +          VDV             +  + +S  G ++     ++    V T
Sbjct: 122 NGLLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +F      G   +N DD       AK     +    + 
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLFSA-HHYGQAVINADDEVGRRWLAK-----LPDAVAV 235

Query: 251 GKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               N +        +    +     + +         E+    +G     N+L+ LG +
Sbjct: 236 SMENNINPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +   +++     P  G   R       G  T++ + Y   P +++ A+      
Sbjct: 296 LALGYPLAALLESAPRLQPVNG---RMEVFSAPGKPTVVVD-YAHTPDALEKALQA---A 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
             H  G+   V G   +  +  +     +AE  +      V ++  +         + D 
Sbjct: 349 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFA----DVVVVTDDNPRTEDPKAIIADI 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           L   +    +  ++G    + +++    + DVV++  K 
Sbjct: 405 LTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKG 443


>gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
 gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
          Length = 471

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 157/455 (34%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+   +  A+ G +     +PV 
Sbjct: 2   TLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ LA    L+   +  ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNQRLSALAGRFYLQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETAAVMGTVG 121

Query: 145 NHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +               +     +       + +S  G ++     +    AV T
Sbjct: 122 NGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F G  + G   +N DD   +   A+       T+   
Sbjct: 182 NLSRDHLDYHGDMASYEAAKWSLFAG-HEVGQAIINADDDVGQRWLAQLPDAVAVTMQG- 239

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                      +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 240 NLQPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSLG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K+ S   P  G   R       G  T++ + Y   P +++ A   L+    H 
Sbjct: 300 YPLAALLKSGSQLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKA---LAAARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---AL 418
           +G+   V G   +  +  +     +AE  +      V ++  +         + D    L
Sbjct: 353 QGQLWCVFGCGGDRDKGKRPLMGGIAEQFA----DRVVVTDDNPRTEEPQAIIADILTGL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                     DVV+V  K 
Sbjct: 409 LDPGRALVIHGRAEAVTSAVMQAKQQDVVLVAGKG 443


>gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium ulcerans Agy99]
 gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium ulcerans Agy99]
          Length = 559

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 171/492 (34%), Gaps = 66/492 (13%)

Query: 7   FHDLLQAIQG------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +L   +        H    VP   + G+++ ++++ P + F A+ G    G      A
Sbjct: 56  LAELAVQVGAVLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHTADA 115

Query: 61  VQKGAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGALNKLAV--AARLRSKATIIAI 113
           +++GA  V+ +   V +I +L     ++PV       G L + A         + T++ I
Sbjct: 116 IERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGI 175

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLTL-------------ARMP 157
           TG+ GKTTT  ++   L +  +    IG+    I    +P TL             A + 
Sbjct: 176 TGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMVE 235

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD  + E+    L   R     +R  +   T ++  HL     + +   AKA +F+  
Sbjct: 236 RGVDTVVMEVSSHALTLGR--VDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPA 293

Query: 218 EK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WME 273
                 ++ +  DD     +  ++   G+    S    + A ++             +  
Sbjct: 294 SALRGHSVVVCIDDEAGRAMADRA---GVAITVS-ATGQPAHWRATDVAPVGAGGQEFTA 349

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   G    V     G++   N L+ L I+  +    + A             G+  +  
Sbjct: 350 LDPAGVGHRVRIGSPGHYNVSNCLLALAILDAVGVSPEQAAPG---LRETRVPGRLEQVD 406

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q F  L+D  Y   P +++  +S L         RR+AV+      G+        + 
Sbjct: 407 RGQDFLALVD--YAHKPGALREVLSTLRN-----PQRRLAVV--FGAGGDRDPGKRGPMG 457

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSL 441
            + +      V ++     G    A++  +         +  V           +     
Sbjct: 458 RIAAEL-ADLVVVTDDNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWA 516

Query: 442 VDGDVVVV--KS 451
             GDVV++  K 
Sbjct: 517 RTGDVVLIAGKG 528


>gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
 gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
          Length = 492

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 103/470 (21%), Positives = 170/470 (36%), Gaps = 46/470 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F ++  AI G          V G++ DSR + P   F A+ G   DG  F   A   GA 
Sbjct: 15  FPEVDAAIAGR--------PVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAV 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V         +   +     V D   AL   A     R   T++A+TG+ GK++  + +
Sbjct: 67  AVAGEGTRPEDLPEATA-WIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFV 125

Query: 127 TIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVDVDFGIFELGMSH 171
              LS + +  A +G+                 + + +  TLAR+  +    +     SH
Sbjct: 126 RQILSRLGRDSASLGTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSH 185

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDS 230
             E R L   V    A  T +   HL     IE+   AK  +F  L   G    +N D +
Sbjct: 186 GIEQRRL-DGVELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGA 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + E +   + A G   I + G+  +   +L +         + +   GK   V    +G 
Sbjct: 245 YAERVIGVADAAG-HAIRTTGRGGDF-IRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGG 302

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNAN 349
              +N L+  G+     A         +      G  G+  R     G   L+D  Y   
Sbjct: 303 FQVENALVAAGLALATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHK 360

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++    VLS + P   GR + V G         +     +AE L+      V ++  
Sbjct: 361 PEALE---HVLSALRPFASGRLVVVFGCGGNRDAGKRPIMGAIAERLA----DRVIVTDD 413

Query: 410 HVLALKDALPRSIHVHYSETMDGL---FLFIQ---SSLVDGDVVVV--KS 451
           +    + A  R+  +  +   + +      I+     L  GDV+VV  K 
Sbjct: 414 NPRNEEPAAIRAAILAAAPGAEEIGDRAEAIRTGVRDLRAGDVLVVAGKG 463


>gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 525

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 164/489 (33%), Gaps = 57/489 (11%)

Query: 4   LWT-FHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           L+T    L  A+                 V  ++ DSR   P + F A  G    G  F 
Sbjct: 10  LFTQLDALAAAVGATVDVGDGGPEARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFA 69

Query: 58  LHAVQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATII 111
             AV+ GA  V+ +          +G  S+PV  VDD   A+ K A        +     
Sbjct: 70  ASAVEAGANAVLTDAQGRDILRRDLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDSY 129

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------- 160
           A+TG+ GKTTT  M+   L ++ +    IG+    +      A +   +           
Sbjct: 130 AVTGTNGKTTTAYMVESILGALGRKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFH 189

Query: 161 -----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E     L + R  +  VR  +A  T +   HL     +E    AKA +F 
Sbjct: 190 RRGGGTDVVMETSSHALVQGR--SDPVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFT 247

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADF--QLRKWKQCS-EQSW 271
             E+     ++ D  +   L A+        + +        D    +  WK  + E S 
Sbjct: 248 P-ERARNAVVSVDGEYGRRLLAECAPRLEGEVAALAVDSGLPDLPDGVVGWKALAMEGSS 306

Query: 272 MEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++   G+ +       G     N  +   +V       D   +AL         G+  
Sbjct: 307 FVLESTDGRRLATSTSLPGDFNVANAALAAVMVMTAGYSPDELARALPAGINPAVPGRME 366

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              LN     ++D ++N      +A ++ +  + P  EGR + + G     G+  +    
Sbjct: 367 --VLNARPRVIVDFAHNT-----EALVNAMKALRPSTEGRLVVLTGS---AGDRDKGKRP 416

Query: 391 DLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMD-----GLFLFIQSS 440
            +   ++ Y    V+++           ++ A+        +  ++            + 
Sbjct: 417 AMGAAVARYG-DFVYITDDDPHNEDPAVIRAAVIEGTRGFDTPVVEIADRSQAIDAAIAE 475

Query: 441 LVDGDVVVV 449
             + D +++
Sbjct: 476 ASERDTILL 484


>gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
 gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
          Length = 459

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 154/390 (39%), Gaps = 47/390 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+    ++LG L        + +    IA++G+ GKTTT  ML+  L +       
Sbjct: 94  EKKIPMMTRAELLGEL--------MENYKHSIAVSGTHGKTTTTSMLSYILMAA------ 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             + +  I +   LA +  ++  G  +  ++   E       ++P + +I  +   HL  
Sbjct: 140 --NTDPTISLGGMLAHIGGNIRVGRGQTFLTEACEYTNSFLELKPLVGIILNVEADHLDF 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNAD 257
           F  +++I  +      G+++ GT+ +N+       ++ K + +G    T+ +FG  ++ D
Sbjct: 198 FKDLDDIRLSFRRFASGIKEGGTLVINH------SIQDKEYIIGDFKGTVITFG--EDGD 249

Query: 258 FQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              R     +  +   EV  + + + +V     G H   N L  +     +  D     +
Sbjct: 250 MHARNIAYDALGNPGFEVYYKDEKLGDVQLLVPGKHNVDNALAAIATAYSIGIDFAAIKQ 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPH 366
                    G  +R++        T+ID+ Y  +P  ++A ++               PH
Sbjct: 310 G---LVSYSGVDRRFQYKGKCNGATVIDD-YAHHPQEIEATLNAAKHYPHKKLYVVFQPH 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
              R IA+L +  +  E +     D+  +  +Y    V  +G     +   + +S    +
Sbjct: 366 TYSRTIALLPEFAKALENA-----DVVILAKIYAAREVNTTGVSAEDISKLMNQSKVTSF 420

Query: 427 S-ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              T + +  +++S L +GD+ +   + + 
Sbjct: 421 YLPTFEEIVDYLRSHLEEGDLCITMGAGNV 450


>gi|261493191|ref|ZP_05989720.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496953|ref|ZP_05993320.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307389|gb|EEY08725.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311154|gb|EEY12328.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 475

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 155/432 (35%), Gaps = 48/432 (11%)

Query: 56  FILHAVQK--GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV+T        + +     IPV    ++L  + +          
Sbjct: 67  FIGHQAENIAGASVVVVSTAIDETNPEIIAAREARIPVIRRAEMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAIAGTHGKTTTTAMISMIYTEAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T I P H+  +    E++          L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
            DD     +  +      + + ++G S+NAD+++  ++Q   Q    V    G+ ++V+ 
Sbjct: 230 ADDETVMEIAPRV----GRQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSGERIDVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  + AL+ F     R  +    +      ++ + 
Sbjct: 286 NVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKIMLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------- 398
           Y  +P  +   I          EG+R+ ++         ++    +  +VLS        
Sbjct: 346 YGHHPTEVDVTIQAARS---GWEGKRVVMIFQ-PHRYSRTRDLFDEFVQVLSKVDALILL 401

Query: 399 --YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             Y      + G    AL  ++     V        D L   +   + DGD+++ + + S
Sbjct: 402 DVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAGS 461

Query: 455 CGFYRLINLLLE 466
               R+   L E
Sbjct: 462 V--SRISRGLAE 471


>gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 7169]
 gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 12P80B1]
          Length = 520

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 39/378 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDG-------HDFILHAVQKGAGLVVVNTDMVASIG 79
            +   +DSR I   + F  +K    D        + +++      A ++     +   + 
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLD 100

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKK 135
            + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +   
Sbjct: 101 GIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGI 160

Query: 136 TYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + A +G              +    + +  T           +  L  S  G  ++    
Sbjct: 161 SSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQG 220

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKS 239
           V    A+ T ++  HL   + +     AKA++F+           +N DD          
Sbjct: 221 VPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF----D 276

Query: 240 HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I  + + K NADF  +  +   +   +EVQ     M  +   +G     N+L 
Sbjct: 277 YETADFQIIGYSQQKPNADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           ++   + L      A    ++    +G   R + A +Q    +ID  Y   P ++K    
Sbjct: 337 SMAAFTALN--PARAADLPNLITQLQGARGRMQRASSQTGAFIID--YAHTPDALK---Q 389

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS +  H  GR IAV G
Sbjct: 390 VLSSLRRHCTGRLIAVFG 407


>gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 503

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 153/470 (32%), Gaps = 49/470 (10%)

Query: 16  GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
              +G+ P      V G+++ +    P + F A+ G    G  +   A ++GA  V+ + 
Sbjct: 21  ARQLGVRPPPVDPSVTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERGAVAVLTDP 80

Query: 73  D-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                       +  +P   VDD    L +L          +     G  G         
Sbjct: 81  AGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLH-DHPTSAFTTLGVTGTQGKTTTTY 139

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLG 173
           +A S++  T   IG+    IG                  L  +  +    +  + +S   
Sbjct: 140 LAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVCAMEVSSHA 199

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            ++         +AV   +   HL     + +   AKA +F   +      +N DD    
Sbjct: 200 LVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFTP-DHARRAVVNVDDDHGR 258

Query: 234 LLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYH 291
            L  ++       + +F    + AD++    +     + +EV    G  +++     G  
Sbjct: 259 RLLDRT----DLPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVPLPGRF 314

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  +  ++    D       ++      GR +R      Q F  ++D  Y   P 
Sbjct: 315 NVSNALAVVAALAPEGHDPADLAAGIAASPGVPGRMER--VDRGQPFTAVVD--YAHKPD 370

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVLSLYNISH 403
           ++ A ++ L  ++P   GR + V+G   +        MGE + + H DL  V      S 
Sbjct: 371 AVTAVLTALRPVTP---GRLVMVIGAGGDRDHGKRPLMGE-AAARHADLVVVTDDNPRSE 426

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +      L  A      V              +    GD VVV  K 
Sbjct: 427 RPAA-IRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKG 475


>gi|84686338|ref|ZP_01014232.1| UDP-N-acetylmuramate--L-alanine ligase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665521|gb|EAQ11997.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2654]
          Length = 467

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 147/418 (35%), Gaps = 49/418 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           FI    +    A +VV+++ +      L       +PV    ++L  L +L         
Sbjct: 61  FIGQRAENLENAEVVVISSAIKPGNPELDTARARGLPVVRRAEMLAELMRLKSN------ 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++   L          G  +  +     +     +   G  E 
Sbjct: 115 ---IAVAGTHGKTTTTTLVAELL--------VAGGIDPTVINGGIIHAYGSNARMGQGEW 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IA++T I P H+ ++   E +     +    +   G      
Sbjct: 164 MVVEADESDGTFNRLPATIAIVTNIDPEHMDHWGTEEALHKGFYDFVSNIPFYGLAVCCT 223

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHH 286
           DD+  + L  K   +  + + +FG +  AD +       +  +  ++ L    ++     
Sbjct: 224 DDADVQTLVGK---ITDRRVVTFGFNAQADVRAVNLTYDAGIAHFDIVLPDGRIDGCTLP 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L        +AL+ F       +R+          +ID+ Y
Sbjct: 281 MPGDHNVSNALAAVAVSRHLGMKFAEIREALAKFGGVN---RRFTRVGMWNDVPIIDD-Y 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISH 403
             +P  + A +    Q     +GR IAV            S   D         +  IS 
Sbjct: 337 GHHPVEIAAVLKAARQA---VKGRVIAV--HQPHRYSRLHSLFDDFCTCFNEADVVGISE 391

Query: 404 VWLSGFHVL--ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+ +G   +  A +D L R +      H +  +T + L   +++    GD+VV   + 
Sbjct: 392 VYAAGEDPIPGATRDDLVRGLTAHGHRHAYAVDTEEDLAALVRAEAEPGDIVVCLGAG 449


>gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
 gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
          Length = 495

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 166/482 (34%), Gaps = 55/482 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----GPWVPTAPRRALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+   +  A  G++     +P+  +  +   L+ L      +   +  ++ +TG+ GK
Sbjct: 61  AAVIAEANGQAEDGAIVEMHGVPIIYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFG 163
           TTT ++L      + +T A +G+  N +   +  A                       F 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLAEQGATFA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+     G ++     +    AV + ++  HL     +    +AK  +F G    G +
Sbjct: 181 AMEVSSH--GLVQHRVAALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAG-HDVGQM 237

Query: 224 FLNYDDSFFELLKAK---SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD   +   +K   + A+ ++     G       +          + +        
Sbjct: 238 IVNADDQVGQHWLSKLPDAVAVTMQDNLLPGCHGRW-LKTTAISYHDNGATLRFSSNWGD 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+    +G     N+L+ L  +  L   +D  ++  S   P  GR + +    N     
Sbjct: 297 GEIASQLMGAFNVNNLLLALATLLALGYPLDKLVETGSRLQPVCGRMEVF----NAPGKP 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +   Y   P +++ A+        H +GR   V G   +  +  +     +AE  +   
Sbjct: 353 TVVVDYAHTPDALEKALEA---ARLHCQGRLWCVFGCGGDRDKGKRPLMGGIAEQFA--- 406

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V L+  +            +   L  +                     + DVV+V  
Sbjct: 407 -DRVVLTDDNPRTEEPQAIINDILAGLLDAGQALVIPGRAEAVTSAIMQAQEQDVVLVAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|56696089|ref|YP_166443.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350286|sp|Q5LU62|MURC_SILPO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56677826|gb|AAV94492.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 144/409 (35%), Gaps = 47/409 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV    D+L  L +L            IAI G+ 
Sbjct: 70  GAAVVVISSAIKPGNPELDGARAQGLPVVRRADMLAELMRLKSN---------IAIAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   + +       I   N  I    +        ++ + E   S     R 
Sbjct: 121 GKTTTTTMMAELMVAGGFDPTVI---NGGIIHAYSSNARMGQGEWMVVEADESDGSFNR- 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +A++T I P H+ ++  IE +     +    +   G      D +  + L  
Sbjct: 177 ----LPATVAIVTNIDPEHMEHWGSIEALRQGFYDFVSNIPFYGIAVCCTDHAEVQALVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQ 294
           +   +  + + ++G +  AD +          +  ++ LQ + M          G H   
Sbjct: 233 R---ITDRRVRTYGFNAQADVRATNLTYKGGVAHFDILLQHEDMVIEGCTLPMPGDHNVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    D    AL+ F       +R+         T+ID+ Y  +P  + 
Sbjct: 290 NALSAVAVARHLGMKADEIRAALAAFGGVN---RRFTKVGEVNGVTIIDD-YGHHPVEIA 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWL 406
           A +    Q S   EGR IAV         LS  F          D+  +  +Y      +
Sbjct: 346 AVLKAARQAS---EGRVIAV-HQPHRYSRLSNLFDDFCACFNEADVVAIAEVYAAGEAPI 401

Query: 407 SGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
            G    AL   L R  H H     + + L   ++     GD+VV   + 
Sbjct: 402 PGADRDALVAGLIRHGHRHARAILSEEDLERLVREQTRPGDMVVCLGAG 450


>gi|298293097|ref|YP_003695036.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
 gi|296929608|gb|ADH90417.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
          Length = 469

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 150/426 (35%), Gaps = 55/426 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
            I HA     GA ++VV++ +      L       +PV    ++L  L +L         
Sbjct: 56  HIGHAAGNIDGAAVLVVSSAIRRDNPELVAARAKRLPVVRRAEMLAELMRLKSC------ 109

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +AI G+ GKTTT  ++   L +       I   N  I           D ++ + E 
Sbjct: 110 ---VAIAGTHGKTTTTSLVATLLDAGGFDPTVI---NGGIINAYGTNARLGDGEWMVVEA 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     +   +A++T I P HL +F   + + +A     + L   G   +  
Sbjct: 164 DESDGTFLK-----LPVEVAIVTNIDPEHLDHFKTFDAVQAAFRSFIDNLPFYGFAVMCT 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-- 285
           D    + L  +      + + ++G++  AD +L             V  +G++ +V H  
Sbjct: 219 DHPVVQDLVGRVE---DRRVITYGENPQADVRLVDLDLRGGVCRFNVLFRGRNGDVRHEL 275

Query: 286 -----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N    + +   L A  +    AL+ F   +   +R+         T
Sbjct: 276 RDLVLPMPGRHNALNATAAIAVAHELGASDEQIRSALAGFGGVK---RRFTRTGEVNGVT 332

Query: 341 LIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + D+ Y  +P  + A +              + PH   R  ++          + + H+ 
Sbjct: 333 IFDD-YGHHPVEIAAVLRAARASTEGQVIAVVQPHRYTRLQSLFDQFA--TCFNDADHVI 389

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +A+V   Y      + G     L +AL    H  V      D L   +++     D VV 
Sbjct: 390 VADV---YPAGEAPIPGIDRDHLVEALRARGHRSVVALPGPDALAGIVKTFAKPEDYVVC 446

Query: 450 KSSNSC 455
             + S 
Sbjct: 447 LGAGSI 452


>gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
 gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
          Length = 467

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 149/429 (34%), Gaps = 54/429 (12%)

Query: 56  FILHAVQKGA--------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA    A          V  +   V +     IPV     +L  L +L         
Sbjct: 54  FVGHAASNLAKVDAVVTSTAVQADNPEVLAAREKRIPVVPRALMLAELMRLKQG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IAI G+ GKTTT  ++   L+      T+   G  N+        AR+ +  D+ + 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNS----AGANARLGLG-DYIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P +AV+T I   H+  +      +  A  +    +   GT  
Sbjct: 160 EADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFANLKKAFVDFLHRMPFYGTAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           L  DD     +  +        I S+G  ++A  +    +    Q     Q +       
Sbjct: 215 LCTDDPAVREIVPQVSC----PITSYGFGEDAQVRAVNVRPVGAQMHFTAQRRNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           +EVV +  G H   N L  + +   L        KAL+ F     R + Y       G  
Sbjct: 271 LEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSYGDVPAKGGGH 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + E Y  +P  + A +   +       GRR  VL         ++    D  +V+   
Sbjct: 331 FTVIEDYGHHPVEVAATL---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVIGQA 386

Query: 400 NI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +   D   L R++ V       +   +D +   I  + + GDVV+
Sbjct: 387 DAVLLAEVYAAGETPIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNALGGDVVM 446

Query: 449 VKSSNSCGF 457
              + S G 
Sbjct: 447 CMGAGSIGL 455


>gi|62178696|ref|YP_215113.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565665|sp|Q57TC9|MURC_SALCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|62126329|gb|AAX64032.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713149|gb|EFZ04720.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 491

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 133/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGSQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I            
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARA---GWPD 372

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
           +++ +L         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 373 KKLVMLFQ-PHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|303228388|ref|ZP_07315221.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516890|gb|EFL58799.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 460

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 141/372 (37%), Gaps = 38/372 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+   L     +    IG   +++     L +     ++ + E   
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEGQMEPTVIIGGEVDYLKGSSCLGKG----EYSVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     +RP   VIT I   H+ ++  +E + +A  +  E L   G   +  D+
Sbjct: 164 SDGSFLK-----LRPKTIVITNIEDDHMDHYKTMENLLNAFCQFVETLPVDGKAVVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                + +K      +   ++G   + D+  +           +V  +G+++  V     
Sbjct: 219 DNIRYVMSKVE----RQFITYGLEDSNDYVAKNIHYEDSSLVYDVVHKGETLSRVSLRVP 274

Query: 289 GYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N L +  +        V + +KAL  F    G  +R+    +     ++D+ Y 
Sbjct: 275 GNHNVLNSLASFIVAHECCHVPVPSIVKALGKF---IGAKRRFETKGHVAGVWVVDD-YA 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  +KA +    ++  H   R I V          +     + A          +  +
Sbjct: 331 HHPTEIKATLKAAKELEKH---RVICVF--QPHRYSRTSLLKDEFATAFTSADEIYMTDI 385

Query: 399 YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     +SG     + + +      HV+Y E ++ L   +   +   D+V+   + S  
Sbjct: 386 YSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKVVRPNDLVITMGAGSIN 445

Query: 457 FY--RLINLLLE 466
            Y  +L+ LL E
Sbjct: 446 QYGPKLLALLEE 457


>gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
 gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
          Length = 502

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 151/481 (31%), Gaps = 49/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----AV 61
             +LL+ +            +  ++ DSR   P   F  + G   DG  F        A 
Sbjct: 5   LDELLRDVGLTPPAGGTNPQIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALNAGAA 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
               G     +D       + +    V   LG L   +   R   +  ++ +TG+ GKTT
Sbjct: 65  AAVIGPAAAASDPPGDHDQVLVVSEPVASTLGELAS-SFWNRPSERMALLGVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIF 165
           T  ++     +  ++ A  G+  N        A                           
Sbjct: 124 TTYLIEHLALACGRSTALFGTLVNRWPGHSVTATHTTAFADRLQAQLSEAASAGSQLAAM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG--T 222
           E+    L + R      R   AV T +   HL     +++   AKA +F E L + G   
Sbjct: 184 EISSHALAQHR--VAGCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPAR 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L  +  +   ++ ++      A+ ++      S      +        
Sbjct: 242 AVVNGDDPWGAKLAERLGSQCWRSSFT---DSTAELRMEDLSMTSRGVSGRLISPLGEGA 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTL 341
                +G     N+L  +G++      +   ++A+S F    GR +R             
Sbjct: 299 FQSPLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLPT 358

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +   Y   P  ++   + L+   P  EG+ I V G     G+  +     +A + +    
Sbjct: 359 VLVDYAHTPDGLE---NALAAARPFAEGKLICVFGC---GGDRDRGKRPQMAAIAARL-A 411

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +            +   +P  +                +     D+V+V  K
Sbjct: 412 DRVVVTSDNPRTEDPQRILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGK 471

Query: 451 S 451
            
Sbjct: 472 G 472


>gi|22127499|ref|NP_670922.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM 10]
 gi|45443360|ref|NP_994899.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809536|ref|YP_653452.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|108810587|ref|YP_646354.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|145600341|ref|YP_001164417.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162418996|ref|YP_001607294.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Angola]
 gi|21960596|gb|AAM87173.1|AE013964_9 UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis KIM 10]
 gi|45438229|gb|AAS63776.1| UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774235|gb|ABG16754.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|108781449|gb|ABG15507.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|145212037|gb|ABP41444.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162351811|gb|ABX85759.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Angola]
 gi|262360674|gb|ACY57395.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis D106004]
          Length = 507

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 143/419 (34%), Gaps = 45/419 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  ML
Sbjct: 103 AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAML 153

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 154 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 205

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 206 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++ Q K  +EV  +  G H A N    + + +
Sbjct: 262 HITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVAT 321

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +  ++AL  F     R              +    ++ + Y  +P  + A I  
Sbjct: 322 EEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 381

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                     +RI +L         ++  + D A VLS  ++     V+ +G   +   D
Sbjct: 382 ARA---GWPDKRIVMLFQ-PHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 437

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             AL R+I              +     +   L   D+++V+ + + G  ++   L E 
Sbjct: 438 SRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGNIG--KIARKLAEH 494


>gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 484

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 160/477 (33%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DLL+ I    +         V+ IS +++ I P  AF  +KG  +D ++ I     
Sbjct: 1   MLVRDLLKGIPVKWVSDDKLYDIDVDNISFNTKDIKPNSAFLLVKGISFDPYEMIDEIFD 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120
                + +    +        P   V++       +         SK   I ITG+ GKT
Sbjct: 61  SKKVKLFITEKPLPEK-----PHILVENARRTFGMICRNFFNIDFSKIKSIGITGTNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG------------ 168
           TT  ++   L         IG+    I      A       + IFE+             
Sbjct: 116 TTNYLIDSILRVSGYKTIRIGTTEYVIVDEKIEANNTTPGIYDIFEMVAKGVKKGASAVC 175

Query: 169 ---MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               SH  +     + +   +AV T +   HL     +E    +K ++F   E +    +
Sbjct: 176 MEVSSHALDQDR-VYGLNFDVAVFTNLTGDHLDYHKTMEHYYQSKKKLFTK-EYSKNAAI 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D  + + L  +         YSF K K  D  +       +     V +  + + +  
Sbjct: 234 NIDYDYGKRLYNEVEIAK----YSFSKGKG-DVGVVDVSYSLDGINCRVNIGDEVISLNS 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H +G H  +N+L  +    IL    D  I+ +  F    GR +++      G +  +D  
Sbjct: 289 HLVGRHNLENILGAVTATYILGISKDDIIRGVEQFKNVPGRLEKFE---KNGAYFFVD-- 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y     ++K  +  L       +GR I V G     G+  ++    +A+V  +Y+   V 
Sbjct: 344 YAHTDDALKNVLEALKGFK---KGRLITVFGC---GGDRDRTKRPRMAKVAEVYS-DIVI 396

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +         V                   GD+V++  K 
Sbjct: 397 VTSDNPRTEDPNAIIDEILTGFENRSKVLVDPDRRIAIKKACDEAKAGDIVLIAGKG 453


>gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
 gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
          Length = 521

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 165/477 (34%), Gaps = 58/477 (12%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
             H    VP   + G+++ ++++ P + F A+ G    G      A+++GA  V+ +   
Sbjct: 32  GPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHAADAIERGAVAVLTDPAG 91

Query: 75  VASIGSL-----SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
           V +I +L     ++PV       G L + A         + T++ ITG+ GKTTT  ++ 
Sbjct: 92  VTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGITGTSGKTTTTYLVE 151

Query: 128 IALSSIKKTYACIGSYNNHI---GVPLTL-------------ARMPVDVDFGIFELGMSH 171
             L +  +    IG+    I    +P TL             A +   VD  + E+    
Sbjct: 152 AGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMVERGVDTVVMEVSSHA 211

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDD 229
           L   R     +R  +   T ++  HL     + +   AKA +F+        ++ +  DD
Sbjct: 212 LTLGR--VDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCIDD 269

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHG 287
                +  ++ A     I      + A ++             +  +   G    V    
Sbjct: 270 EAGRAMADRAGAA----ITVSATGQPAHWRATDVAPVGAGGQEFTALDPAGVGHRVRIGL 325

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G++   N L+ L I+  +    + A             G+  +    Q F  L+D  Y 
Sbjct: 326 PGHYNVANCLLALAILDAVGVSPEQAAPG---LRETRVPGRLEQVDRGQDFLALVD--YA 380

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +S L         RR+AV+      G+        +  + +      V   
Sbjct: 381 HKPGALREVLSTLRN-----PQRRLAVV--FGAGGDRDPGKRGPMGRIAAELADLVVVTD 433

Query: 408 ----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               G    A++  +         +  V           +       GDVV++  K 
Sbjct: 434 DNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKG 490


>gi|117622377|ref|YP_851290.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
 gi|166224687|sp|A1A7D6|MURC_ECOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115511501|gb|ABI99575.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
          Length = 491

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 133/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I            
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARA---GWPD 372

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
           +++ +L         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 373 KKLVMLFQPHRF-TRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 492

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 158/466 (33%), Gaps = 41/466 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++        
Sbjct: 8   WVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAKDE 67

Query: 78  IGS------LSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                      +PV  +  +   L+ L             ++ +TG+ GKTTT ++L   
Sbjct: 68  ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEI 175
              + +T A +G+  N +   +            +                + +S  G +
Sbjct: 128 SQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLV 187

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     ++   +V T ++  HL     +E   +AK  ++      G   +N DD      
Sbjct: 188 QHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRW 246

Query: 236 KAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            AK     +        + N      +          + +         E+  H +G   
Sbjct: 247 LAKLPD-AVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFN 305

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L+ L  +  L   +   +K  +   P  G   R       G  T++ + Y   P +
Sbjct: 306 VSNLLLALATLLALGYPLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDA 361

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFH 410
           ++ A+        H  G+   V G   +  +  +     +AE  +   +       +   
Sbjct: 362 LEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 418

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
              + D L   +   +++ M+G    +  ++    + DVV+V  K 
Sbjct: 419 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 464


>gi|320157422|ref|YP_004189801.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus MO6-24/O]
 gi|319932734|gb|ADV87598.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus MO6-24/O]
          Length = 486

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 140/405 (34%), Gaps = 40/405 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVKAAREARIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +                I E   S    +      ++P + ++T I
Sbjct: 147 AGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVCIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRIS----RQVITYG 254

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q  +Q    V  +  +++++  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIENYRQEGQQGKFTVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + A+        R +            ++ + Y  +P  +   I      +   + R
Sbjct: 315 DAILAAMIGTQGTGRRFEHLGEFETGNGNVMLVDDYGHHPTEVDVTIHAAR--NGWQDKR 372

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH 425
            + +          ++  + D A VL   ++     V+ +G   +A  D  +L R+I   
Sbjct: 373 LVMIF--QPHRYSRTRDLYDDFANVLEQVDVLVMLDVYAAGEKAIAGADSRSLCRTIRSR 430

Query: 426 ------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +      L   + + L +GD+++ + +   G  ++   L
Sbjct: 431 GKIDPIFVADTQQLPEVLANILQEGDLLLAQGAGDIG--KVARQL 473


>gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
 gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
          Length = 460

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 140/372 (37%), Gaps = 38/372 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+   L  +       IG   +++     L +      F + E   
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDYLKGSSCLGKG----HFSVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     + PH  VIT I   H+ ++  ++ + +A  E  E L + G   +  D+
Sbjct: 164 SDGSFLK-----LHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPEAGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                + ++      +T  ++G   N D+  +           +V  +G ++  +     
Sbjct: 219 ENIRYVMSRVK----RTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGINISRISLRVP 274

Query: 289 GYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N L    +       +     KAL  F    G  +R+    +     ++D+ Y 
Sbjct: 275 GEHNVLNSLAAFIVAHECCGVENRFITKALGKF---IGAKRRFETKGHVAGVWVVDD-YA 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  +KA +    ++  H   R I V          +     + A          +  +
Sbjct: 331 HHPTEIKATLRAAKELEKH---RVICVF--QPHRYTRTSLLKDEFATAFTSADEIYMTDI 385

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     ++G     + DA+  + +  VHY  ++D +   +   +   D+V+   + S  
Sbjct: 386 YSSGEDPIAGIDGRTIPDAVEAATNKVVHYVPSVDDIPAVLAKIVRPNDLVITMGAGSIN 445

Query: 457 FY--RLINLLLE 466
            Y  +L+ +L E
Sbjct: 446 QYGPKLLAILEE 457


>gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 581

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 102 VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 161

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 162 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 221

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 222 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 279

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 280 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 335

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 336 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 395

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 396 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 450

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 451 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 502

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 503 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 550


>gi|224581972|ref|YP_002635770.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254766020|sp|C0Q5I7|MURC_SALPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|224466499|gb|ACN44329.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 491

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 133/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I            
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARA---GWPD 372

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
           +++ +L         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 373 KKLVMLFQ-PHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|217979592|ref|YP_002363739.1| UDP-N-acetylmuramate--L-alanine ligase [Methylocella silvestris
           BL2]
 gi|254766012|sp|B8ETM5|MURC_METSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217504968|gb|ACK52377.1| UDP-N-acetylmuramate/alanine ligase [Methylocella silvestris BL2]
          Length = 468

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 142/405 (35%), Gaps = 43/405 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   +A    L +PV    ++L  L +L            +AI G+ GKTTT  ++
Sbjct: 75  AIKRNNPELAYARELRLPVVRRAEMLAELMRL---------KQCVAIAGTHGKTTTTSLV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I      I    T +R+    D+ + E   S    ++     +   +
Sbjct: 126 ATLLEAGGFDPTVIN--GGIINAYGTNSRLGAG-DWMVVEADESDGTFLK-----LPADV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I P HL +F   E I  A     E +   G   +  D    + L  +      + 
Sbjct: 178 AIITNIDPEHLDHFGTFENIRKAFRSFVENIPFYGFAVMCLDHPTVQELVGQIE---DRR 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMT 299
           + ++G++ +AD +L         S   V ++ +         +++    G H A N    
Sbjct: 235 VITYGENPHADVRLVDIDLAGGMSRFSVVVRDRKSGGETVIEKILMPMPGLHNALNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L    D    AL+ F   + R  R      +    ++ + Y  +P  + A   V
Sbjct: 295 IAVAHQLGMSPDQIRGALAGFGGVKRRFTR----TGEWNGAIVFDDYAHHPVEIAA---V 347

Query: 360 LSQISPHGEGRRIAVL--GDMCEMG----ELSQSFH-IDLAEVLSLYNISHVWLSGFHVL 412
           L       +GR IA++       +     E +  F+  D   V  +Y      + G    
Sbjct: 348 LKAARASTKGRVIAIVQPHRYTRLHSLFNEFAACFNDADAVIVADVYPAGEAPIEGADRD 407

Query: 413 ALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKSSNSC 455
            L  A+    H           L   ++     GD +V+  + + 
Sbjct: 408 GLVAAIKARGHRLAMPLARPADLSRLVRQLARPGDYIVLLGAGNI 452


>gi|121535917|ref|ZP_01667713.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
 gi|121305488|gb|EAX46434.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
          Length = 460

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 145/420 (34%), Gaps = 47/420 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     + +F   D++ AL               IAI G+ GKTTT  M
Sbjct: 72  SAIPESNPEIRAAREQGLKIFHRADIVAALMAEREG---------IAIAGAHGKTTTTSM 122

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           + + L          IG    +IG      +      + + E   S    ++       P
Sbjct: 123 IALVLEKAGLDPTVLIGGELEYIGGNAKYGKG----RYLVAEADESDGSFLKLT-----P 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +AV+T I   H+  +  +E I    K  +++   K G   L +D+S+   + A      
Sbjct: 174 RLAVVTNIENDHMDFYETMENILFTFKEFLYKIHPKDGLAVLCFDNSYIRNIAASL---- 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
            +   S+  + +A+F  R  +        +     + +  +  +  G H   N L  L +
Sbjct: 230 DRPYISYAINHDAEFTARNIRVHGPAIIYDAYRHNELLGTIRLNVPGRHNVANSLAALAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +          L+ F    G  +R++         ++D+ Y  +P  +   +    +
Sbjct: 290 GLHVGLTFSQVADGLASFL---GAKRRFQTKGRVNGIWVVDD-YAHHPTEITTTLLAARE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLA 413
           + P    R I V          ++    +            +  +Y      + G     
Sbjct: 346 MRPK---RLICVF--QPHRYSRTKFLRSEFGRAFEPADILVLTDIYPAGEKPIPGITGEV 400

Query: 414 LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +K+ + R  +  V Y    + +  ++      GD+++   + +   Y+    L+E+  A+
Sbjct: 401 IKEEVERQTNRLVTYIPDRNNIARYLAEIAEPGDLIITMGAGNI--YQAGEELVEKLNAV 458


>gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
 gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
          Length = 463

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/433 (20%), Positives = 159/433 (36%), Gaps = 49/433 (11%)

Query: 56  FILHA---VQKGAGLVVVNTDMVA-----SIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA   +++   +VV                  +PV    DVL  L          +K
Sbjct: 56  FIGHAACQIERAEVIVVSTAIHPDNPELVEAHKRGVPVIHRSDVLAYL---------MNK 106

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ML++                  +   L    +    D+ + E 
Sbjct: 107 HKGIAVAGAHGKTTTSSMLSLITCDNGID---PTVVVGGVVNNLGTNSVNGKSDYVVAEA 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++F     RP++AVIT I   HL ++   E+I  A  +  + +++ G   L Y
Sbjct: 164 DESDGSFLKF-----RPYLAVITNIENDHLDHYGTEEKIQEAFQQFVDQVKEQGKAILCY 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
           D+     +  K+       + S+G   K+AD++    +   + +  ++  +GK + +   
Sbjct: 219 DNEKVRRVGEKTAT----EVISYGIDAKDADYRAENIEYGKDGTHYDILFRGKKIGKGHL 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L     L   V+   ++L  F    G  +R+          ++D+ 
Sbjct: 275 IVPGRHNVLNALGALAAARELGLSVEEISRSLEKFT---GAKRRFETKGRVRGIWVVDD- 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSF-HIDLAEVLSL 398
           Y  +P  +K  +    Q  P    R I V            + E + +F   D   V  +
Sbjct: 331 YAHHPTEIKVTLKAARQTQPK---RLIVVFQPHRYTRTQLLLDEFAVAFKEADELIVTDI 387

Query: 399 YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y  S   + G     L + + R     V Y    + +  ++      GD+V+   + S  
Sbjct: 388 YAASEDPIPGISGKMLAETIQRTTGQDVSYMSGFESIKNYLVDHAAAGDLVMTIGAGSIN 447

Query: 457 FYRLINLLLEEFP 469
             +L   L+E   
Sbjct: 448 --QLGASLVEALE 458


>gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis CO72]
          Length = 520

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 135/378 (35%), Gaps = 39/378 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDG-------HDFILHAVQKGAGLVVVNTDMVASIG 79
            +   +DSR I   + F  +K    D        + +++      A ++         + 
Sbjct: 41  FDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDSAAFVISELDLAGLDLD 100

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKK 135
            + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +   
Sbjct: 101 DIQIPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGI 160

Query: 136 TYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + A +G              +    + +  T           +  L  S  G  ++    
Sbjct: 161 SSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQG 220

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKS 239
           V    A+ T ++  HL   + +     AKA++F+           +N DD          
Sbjct: 221 VPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF----D 276

Query: 240 HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I  + + K NADF  +  +   +   +EVQ     M  +   +G     N+L 
Sbjct: 277 YEAADFRIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           ++   + L      A    ++    +G   R + A +Q    +ID  Y   P ++K    
Sbjct: 337 SMAAFTALN--PARAADLPNLITQLQGARGRMQRASSQTGAFIID--YAHTPDALK---Q 389

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS +  H  GR IAV G
Sbjct: 390 VLSSLRRHCTGRLIAVFG 407


>gi|37527517|ref|NP_930861.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|44888164|sp|Q7N148|MURC_PHOLL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|36786952|emb|CAE16026.1| UDP-N-acetylmuramate--alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 491

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 144/422 (34%), Gaps = 51/422 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +     IPV    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAILADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++   +            N  +              + I E   S    +      ++P 
Sbjct: 137 ISSIYAQAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AVIT I   H+       E +          L   G   +  DD   + L  +      
Sbjct: 189 VAVITNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVKELIPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S+ AD ++  ++Q   Q +  V  Q    ++VV +  G H A N    + + 
Sbjct: 245 RYITTYGFSEEADVRITHYQQKGAQGYFTVSRQDMADLKVVLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKA 355
           +         + AL+ F    G G+R+             +G   ++ + Y  +P  + A
Sbjct: 305 TEEGISGSDILAALAGFQ---GTGRRFDFLGNFSLEHVNGKGGSAMLVDDYGHHPTEVDA 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWL 406
            I       P  + R + +          ++  + D A VL+          Y+   V +
Sbjct: 362 TIKAARAGWP--DKRIVMIF--QPHRYTRTRDLYDDFANVLNQVDVLLMLDVYSAGEVVI 417

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G    +L   +     +          +   +   L   D+++V+ + + G  ++   L
Sbjct: 418 PGADSRSLCRTIRSRGKLDPILVSDPAKVTAVLAQVLDGHDLILVQGAGNIG--KIARNL 475

Query: 465 LE 466
            E
Sbjct: 476 AE 477


>gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           XB6B4]
          Length = 459

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 162/429 (37%), Gaps = 51/429 (11%)

Query: 42  AFFAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
            F+  K  +  DG D I++        +  +    A+    SIP+    ++LG +     
Sbjct: 57  IFYGQKAENLTDGIDLIVYT-----AAIREDNPEYAAAKERSIPMLSRAELLGQI----- 106

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
              + +    IA+ G+ GKTTT  M++  L + K         +  I V   L  +  ++
Sbjct: 107 ---MDNYNNSIAVAGTHGKTTTTSMISQILLAAKA--------DPTISVGGILKAIEGNI 155

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  ++ +S   E         P  +VI  +   HL  F  I++I ++  +     +K 
Sbjct: 156 KVGKSDIFVSEACEYTNSFLHFYPRYSVILNVEAEHLDFFKDIQDIRNSFRKFAGNTKKD 215

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQG 278
           G I +N +   +  L +         + +FG + + D+             S+  +    
Sbjct: 216 GAIIINGEIENYTELTSGL----DPQVITFGLNDSCDYYPSDITFDETACASFTAMHHGT 271

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             M+V  H  G H   N L  + +   L    D  +  LS F    G  +R++       
Sbjct: 272 PVMDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFG---GADRRFQYKGCVDG 328

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+ID+ Y  +P  ++A ++            +  VL         +++F  D A+VLS+
Sbjct: 329 VTIIDD-YAHHPTEIRATLTAAKNYP-----HKRLVLAFQPHTYSRTKAFLDDFADVLSM 382

Query: 399 YNISHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            ++  V L+  +               L     +    +Y  + + +  F+  + ++GD+
Sbjct: 383 ADV--VVLADIYAAREKNTYDISSRDILAKLKEKGTECYYFPSFEEIEKFLLKNCINGDL 440

Query: 447 VVVKSSNSC 455
           ++   +   
Sbjct: 441 LITMGAGDI 449


>gi|291616273|ref|YP_003519015.1| MurC [Pantoea ananatis LMG 20103]
 gi|291151303|gb|ADD75887.1| MurC [Pantoea ananatis LMG 20103]
 gi|327392725|dbj|BAK10147.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Pantoea ananatis
           AJ13355]
          Length = 491

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 137/407 (33%), Gaps = 43/407 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAREQRIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEGGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +              + I E   S    +      ++P +AV+T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAVVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD+    L  +      + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDAVIRDLLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           ADF++  ++Q   Q    +  Q K+ +++  +  G H A N    + + S    +    +
Sbjct: 256 ADFRIEAFEQRGAQVHFSLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDSAIL 315

Query: 315 KALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            AL  F     R  +           Q    ++ + Y  +P  + A I            
Sbjct: 316 AALESFQGTGRRFDQLGEFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARA---GWPD 372

Query: 370 RRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +++A++            F         +D+  +L +Y      + G    AL  A+   
Sbjct: 373 KKLAMVFQPHRYTRTRDLFDDFANVLSQVDVLLMLDVYAAGETPIPGADSRALCRAIRHR 432

Query: 422 IHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V        D L   +   L   D+++V+ + + G  ++   L E
Sbjct: 433 GKVDPILVPEHDALVEMLAPLLSGNDLILVQGAGNVG--KVARKLAE 477


>gi|297569450|ref|YP_003690794.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925365|gb|ADH86175.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 490

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 163/469 (34%), Gaps = 79/469 (16%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           G  +DG   +   V   +  V  +   V +     IPV    ++L  L +L +       
Sbjct: 54  GIGHDGRWVVGADVVVISSAVKPDNPEVTAAHEALIPVIPRAEMLAELMRLKING----- 108

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IA+ GS GKT+T  M    L+         IG   N  G    L     + DF + E
Sbjct: 109 ---IAVAGSHGKTSTTSMAGTLLAEAGLDPTVVIGGQVNSFGSNAKLG----EGDFLVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    ++     + P + ++T I   H+ ++  +E + +A  E    +   G   L 
Sbjct: 162 ADESDGSFLK-----LSPVLEIVTNIDLEHVDHYHDLEAVKAAFLEFINRIPFYGAAILC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----- 281
            DD     L      L  K   ++G S  AD Q R+       S  EV  +G+       
Sbjct: 217 LDDPNVAALL----PLVRKRTITYGLSSQADVQAREITSRGFVSRFEVWQRGREQATNNG 272

Query: 282 -----------------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                                   V     G H   N L  + +   L        +ALS
Sbjct: 273 KNCAQDNGMAQDAVSREPLRKLGSVALAVPGRHNIYNALAVIALGLELEIPFPVIARALS 332

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            +    G  +R          T++D+ Y  +P  ++A ++ + Q  P    RR+ VL   
Sbjct: 333 TYS---GVQRRLEVKGEVDGITVVDD-YGHHPTEIRATLAAMRQAWPK---RRLVVLFQP 385

Query: 379 CE-------MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSIHVHYSET 429
                    + +   +FH        L  +  ++ +G   +A    DAL R+I  H  + 
Sbjct: 386 HRYSRTAGLLPDFCTAFHDA-----DLLLLDDIYAAGEEPVAALAGDALARAIRRHGQKE 440

Query: 430 MDGL------FLFIQSSLVDGDVVVVKSSNSC-GF-YRLINLLLEEFPA 470
           ++ +         +   L  GDVV+   + +       ++  L E+  A
Sbjct: 441 VEYVSGLIDNPEAVLPVLKRGDVVLTLGAGNIWRLGESVLAALTEKDQA 489


>gi|326330650|ref|ZP_08196954.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325951491|gb|EGD43527.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 496

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 95/409 (23%), Positives = 159/409 (38%), Gaps = 41/409 (10%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------------VA 101
           F+LHAV      V V   ++A + +  +P+  V     AL  +                A
Sbjct: 103 FVLHAV------VTVLIALLAPVAAGLLPILAVPLAEAALAIMWPIEKAMAKKWQVQAAA 156

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDV 160
              +    I+AITGS GKT+TK   T  +     T A   S+NN +G+   +  R+    
Sbjct: 157 TIKKVNPKIVAITGSYGKTSTKNYATHLMQGRWSTLASPASFNNAMGLSRAVNDRLQPGT 216

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+G    GEI  LT +  P +A ITTI  AHL      E I  AK+EI   L K 
Sbjct: 217 DIFVAEMGTYGPGEIAELTEIFPPEVAAITTIGEAHLERMKSRETIVKAKSEI---LPKA 273

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN D     L+     A       S      A+  +   K         V+L  + 
Sbjct: 274 STVVLNIDVPELALIAENLRASKRVIACSAVPGTAAEVLVTDGKLTINNETYAVELPDEV 333

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +          N+ + +G+   +   ++T            G   R       G   
Sbjct: 334 GHPI----------NVAIAVGLALAVEVPIETI---TQRLASIPGTPHRAEANRTPGGVW 380

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+++N+NP    AA++   +++    G    +   M E+G    + +I+ A+  +  +
Sbjct: 381 VIDDTFNSNPTGAAAALAKAKRLAGES-GTVWTITPGMVELGTEQAARNIEFAQAATASD 439

Query: 401 ISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + + G  +  AL+   P        ++         ++  +GDVV+
Sbjct: 440 KMQLCIVGRTNRKALRAGDP--ARTTAFDSRKAAADHALTAAKEGDVVL 486


>gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
 gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
          Length = 545

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 108/540 (20%), Positives = 184/540 (34%), Gaps = 100/540 (18%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  D+  A     I  +  G         + IDSR +     F A  G H +G+D+ L A
Sbjct: 5   TVQDICSATSAQVIAPLAAGASCTLRSVDVVIDSRRVQKGSMFVAFIGEHTNGNDYALRA 64

Query: 61  VQKGAGLVVVNTD------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113
           ++ GA  + +  D        A      +     DD    L +LA   R ++    ++ I
Sbjct: 65  IEAGAACICLTQDASQDLICAAEQNGCVLLRAQNDDAETFLLRLASWWRTQNMHWIVVGI 124

Query: 114 TGSVGKTTTKEMLTIAL--------------------------SSIKKTYACIGSYNNHI 147
           TGS GKTTTK++   AL                          S+  +   C    N H 
Sbjct: 125 TGSCGKTTTKDLCAQALATRYRVHATQGNFNNLIGVPLTILSASAQDEVIVCEMGMN-HP 183

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G   TL+R+ +     I  +G SH+G +     +    + +IT I           +  A
Sbjct: 184 GELATLSRVALPCLCVITNIGTSHIGILGSREAIATAKLEIITAIR----GYTGSSKTHA 239

Query: 208 SAKA----EIFEGLEKT--GTIFLNYDDSFFELLKAKSHAL-----GIKTIYSFGKSKNA 256
           S  A     + + L       + L+  D F   L   +             ++      +
Sbjct: 240 SEHASAQLPVQKPLPAEIPPMLLLDAHDDFCAYLTRHAQQYEYDNEAGVPAHAGSAHGGS 299

Query: 257 DFQLRKWKQCSEQSWME------------------------------------VQLQGKS 280
           + ++         +                                       +   G++
Sbjct: 300 NLRISYIDHGQHAAEPTPAASSSQAASISAGAVCIRTQAPISLDEHGCAHTQLIYADGET 359

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +           + L  L I   L  D   AI+A+           R           
Sbjct: 360 HALSMSQPSKAACIDALFALAIADELACDRSAAIRAIEACSCVH---MRLEEISRPHKPF 416

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+SYNA+PAS+  A++VL   + +   R IA+LG++ E+G  S   H  +    +   
Sbjct: 417 IIDDSYNASPASIAQALAVLHHCTGYT--RHIAILGEVGELGNQSARLHDYIGAYAAASG 474

Query: 401 IS-HVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +   V++ G     + +A       +  +HY   +    L I   L + D V+VK+S +C
Sbjct: 475 VDMLVFVGGEDAKRMVEAARTMGYPAEQLHYVRDVHEAQLRIAPLLRETDAVLVKASRAC 534


>gi|153949929|ref|YP_001402343.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165928218|ref|ZP_02224050.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937849|ref|ZP_02226410.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008796|ref|ZP_02229694.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211992|ref|ZP_02238027.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401224|ref|ZP_02306724.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422021|ref|ZP_02313774.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426494|ref|ZP_02318247.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025732|ref|YP_001722237.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186894045|ref|YP_001871157.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|270487851|ref|ZP_06204925.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294502644|ref|YP_003566706.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
 gi|152961424|gb|ABS48885.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165914261|gb|EDR32877.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919829|gb|EDR37130.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992135|gb|EDR44436.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206738|gb|EDR51218.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960158|gb|EDR56179.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049249|gb|EDR60657.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054592|gb|EDR64400.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752266|gb|ACA69784.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697071|gb|ACC87700.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|262364621|gb|ACY61178.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis D182038]
 gi|270336355|gb|EFA47132.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294353103|gb|ADE63444.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
          Length = 500

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 143/419 (34%), Gaps = 45/419 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  ML
Sbjct: 96  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAML 146

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 147 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 198

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 199 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++ Q K  +EV  +  G H A N    + + +
Sbjct: 255 HITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVAT 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +  ++AL  F     R              +    ++ + Y  +P  + A I  
Sbjct: 315 EEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                     +RI +L         ++  + D A VLS  ++     V+ +G   +   D
Sbjct: 375 ARA---GWPDKRIVMLFQ-PHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 430

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             AL R+I              +     +   L   D+++V+ + + G  ++   L E 
Sbjct: 431 SRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGNIG--KIARKLAEH 487


>gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
 gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
          Length = 471

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 163/455 (35%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+   +  A  G+++    +PV 
Sbjct: 2   TLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L      +   +  ++ +TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETGAVMGTVG 121

Query: 145 NHIGVPLTLARMP----VDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +          VDV   + E          + +S  G ++     +    AV T
Sbjct: 122 NGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIKTI 247
            ++  HL     +    +AK  +F G  + G   +N DD   +   +K   + A+ ++  
Sbjct: 182 NLSRDHLDYHGDMANYEAAKWSLFAG-HEVGQAIINADDEVGQRWLSKLPDAVAVTMQDN 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              G       +          + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 LQLGCHGRW-LKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSLG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  ++  +   P  GR + +    N      +   Y   P +++ A+        H 
Sbjct: 300 YPLDKLVETGNQLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKALEA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---AL 418
           +G+   V G   +  +  +     +AE  +      V ++  +         + D    L
Sbjct: 353 QGQLWCVFGCGGDRDKGKRPLMGGIAEQFA----DRVVVTDDNPRTEEPQAIIADILTGL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                     + DVV+V  K 
Sbjct: 409 LDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKG 443


>gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Serratia proteamaculans 568]
 gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans
           568]
          Length = 495

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 160/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPTAPGRALREMTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             V+   +  A  G+++    +PV  +  +   L+ L          +  ++ +TG+ GK
Sbjct: 61  AAVIAEAEGQAEDGAITEMHGVPVIYLSQLNQRLSALAGRFYHEPAERLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIF 165
           TTT ++L      + +T A +G+  N +   +               +    VD    + 
Sbjct: 121 TTTTQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELVDQGATLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +    +AK  +F G  + G   +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAG-HEVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD   +   ++     +                 +          + +         E
Sbjct: 240 NADDEVGQRWLSQLPD-AVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +   +   P  GR + +    N      +
Sbjct: 299 IESRLMGAFNVSNLLLALATLLSLGYPLAKLVATGNQLQPVCGRMEVF----NAPGKPTV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H  G+   V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALEA---ARLHCLGQLWCVFGCGGDRDKGKRPLMGGIAEQFA----D 407

Query: 403 HVWLSGFHVLA------LKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +         + D    L  +                     + DVV+V  K 
Sbjct: 408 RVVVTDDNPRTEEPQAIIADILTGLLDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKG 467


>gi|225174456|ref|ZP_03728455.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
 gi|225170241|gb|EEG79036.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
          Length = 461

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 154/426 (36%), Gaps = 43/426 (10%)

Query: 44  FAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            A +G     GHD    +   GA LV+ +T +       +     V   L   ++  + A
Sbjct: 46  LAREGAEVHQGHD---KSYVDGAELVIYSTAIPRHNPEYAA---AVQAGLPIWHRSKLLA 99

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
              +    IAI G+ GKTTT  M+   L+S      A IG   N  G    + R      
Sbjct: 100 HFLNGRFGIAIAGTHGKTTTTSMVAKVLTSGGLDPTAFIGGVLNDFGGNARIGR----SQ 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
           + + E   S    +R+   L     AV+T I   H+ ++    + + S   +  + ++  
Sbjct: 156 YVVAEADESDNSFLRYNASL-----AVVTNIEADHMEHYEGDFDLLLSGYRQFLKNIKPE 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT  L  +D +   +        +  I ++G+ K  D++    +     +   V+     
Sbjct: 211 GTAILYAEDQYLGDMVPD----HLSKIITYGRDKG-DYRATDLRPQGWGTRFTVRRGEAE 265

Query: 281 M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + E+  H  G H   N L  + +   L        K L  F    G  +R++    +   
Sbjct: 266 LGEIFLHVPGSHNVLNALAAVVVGLELGVSFADIQKGLGEF---RGADRRFQFLYQKNDL 322

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE----- 394
            +ID+ Y  +P  ++  +       P    R IAV          +Q F  D A      
Sbjct: 323 LVIDD-YAHHPTEVQVTLQAARSNKP---RRVIAVF--QPHRYSRTQYFMDDFARSFGQA 376

Query: 395 ----VLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +Y  S   L G     L + +  + + V   +  + +   + + L  GD+V+ 
Sbjct: 377 DKVFLHRIYAASEEPLEGVSSSVLAERIRAQGVDVEQIDDENEIVEKVLAMLQAGDMVLT 436

Query: 450 KSSNSC 455
             +   
Sbjct: 437 MGAGDV 442


>gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
 gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
          Length = 465

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 143/414 (34%), Gaps = 43/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+LG L +           T +   G+ GKT+T  M
Sbjct: 77  AAIPQDNPELVGAAEHGIPVIRRSDLLGELME---------GYTQMLFAGTHGKTSTTSM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +AL +  +  +        IG  L  A        G   +  +   +   L +  RP 
Sbjct: 128 AVVALQAAGEDPS------FAIGGQLNRAGTNAHHGSGAVFVAEADESDGSLLRY--RPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I P HL  F   E       +  + +  TGT+ +  DD        ++   G+ 
Sbjct: 180 IAVITNIEPDHLDYFGDAETYYKVFDDFADRITDTGTLIVCLDDESAAECGVRALERGV- 238

Query: 246 TIYSFGKSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           T+  +G   +        +  W+  ++ S ++V L G  M       G HM  N +  L 
Sbjct: 239 TVVGYGTMTHPSIPNAAHVVDWRTENDLSVVKVNLNGTEMTYHLSIPGKHMVLNSVAALV 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                 AD     + LS F    G  +R+         T + + Y  +P  + A +    
Sbjct: 299 AGVTAGADPFALAEGLSGFT---GVRRRFELRGELSDGTRVYDDYAHHPTEVDAVLKAAK 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVL 412
                  G R+ V      +   +Q F  + A+         VL ++      + G    
Sbjct: 356 GT-----GARVVVCFQ-PHLYSRTQEFAGEFADALSLADAAVVLDIFGARETPVEGLDSR 409

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            + D +  +  V Y          +   +  GD+V+   + S       +++ L
Sbjct: 410 IITDHMSIT-DVVYEPNFSAAPAAVAKLVRPGDLVLTMGAGSVTMLADPILDAL 462


>gi|299144101|ref|ZP_07037181.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518586|gb|EFI42325.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 465

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 147/414 (35%), Gaps = 45/414 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            + +  + + +   L I +      LGAL K           T IAI+G+ GKTTT  M+
Sbjct: 83  AINIENEELKAAIKLKIDIIDRASFLGALMKNYD--------TSIAISGTHGKTTTTSMV 134

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  + ++        + N  I +   L  +  +V  G  +L ++   E +       P  
Sbjct: 135 TEIIKNL--------NSNPTILLGGQLDDINGNVKIGDKKLFLTEACEYKANVLKYFPTT 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+  I   HL  F  IE I          L     + LN DD   ++L         + 
Sbjct: 187 AVVLNIDEDHLDYFDNIEHIIKTFKGFVNNLNSNDKLILNLDDENSKMLLNDKK----EN 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           + +F     A++  +      +     ++    K +  V    +G H   N L  +    
Sbjct: 243 VITFSTKSPANYNAKNITYSLDGYPSYDLYYNEKFIGNVELSIMGNHNVSNSLAAIAASV 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
                   AI         +G  +R           +I++ Y  +P  +KA+++ L    
Sbjct: 303 ENGVSFKDAING---IKIYKGVHRRLEYKGKYND-AIIEDDYAHHPTEIKASLNALKNSC 358

Query: 363 -------ISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLAL 414
                    PH   R   +L         S+SF + D+  +  +Y          H   L
Sbjct: 359 KGSLYCIFQPHTFTRTKLLL------DSFSKSFNNADVVIITDIYAAREKDYGDIHSKTL 412

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            DA+     +  Y +    +  +++ +L + D+ V   +     Y++   LLE+
Sbjct: 413 CDAINSNGGNAFYLKNFSDVCEYLKKNLKENDMAVTMGAGDV--YKIGEALLED 464


>gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
 gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
          Length = 499

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/495 (17%), Positives = 179/495 (36%), Gaps = 65/495 (13%)

Query: 1   MNPLWTFHDLL-QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L   H+L+   I G ++ I    ++ G+ +DSR+I     F AI+G + DG   I  
Sbjct: 1   MFKLKQLHELIVPWISGINVKIP---YLTGLELDSRNINFGNLFIAIQGYNTDGRLHIDD 57

Query: 60  AVQKGAGLVVVNTDMVASI-------GSLSIPVFGVDDVLGALNKL--AVAARLRSKATI 110
           A+  GA  ++  +   ++            IP+   + +   ++ +             +
Sbjct: 58  AINNGAVAILSESYNKSTFFIKKIVNNVEVIPIIYFNQLNKCISNIAGRFYDHPSLCLKL 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARM 156
           I +TG+ GKTT   +LT   S + +  A +G+  N +   +               + + 
Sbjct: 118 IGVTGTNGKTTITHLLTNWTSLLGERSAVMGTLGNGVLSDINPSCCTTCSAIETQKILKQ 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            V        + +S  G  ++    +   +A+ + I+  HL   + I +   AK  +F  
Sbjct: 178 FVQSGVTFVAMEISSHGLDQYRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLFNE 237

Query: 217 LEKTGTIFLNYDDSFFELL---KAKSHALGIKTIYSFGKSK------NADFQLRKWKQCS 267
           L       +N DD          + + A+ IK       S        AD+ L   K   
Sbjct: 238 LRVKNY-VINVDDCVGYRWLLSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIVF 296

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + SW        +  +    +G     N+L+ LG + I+   + + +   S  +P  G  
Sbjct: 297 KSSW-------GNGFIHSQLLGEVNVSNILLALGALLIMGYSLKSLLYTGSKLYPVCG-- 347

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R          T+I + Y   P ++K  +     +    +GR   + G         +S
Sbjct: 348 -RLEVLSCLNHPTVIVD-YAHTPDALKKILIFAKHL--CNKGRLWCIFGCGGNRDRSKRS 403

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDG---LFLFIQ 438
               +  + + Y+  +V ++  +         + D + +  +    + ++        + 
Sbjct: 404 L---MGVIANRYS-DYVIITNDNPRVEDPKLIIDDIICKIRNSEKLKIIEDRVYAINMVV 459

Query: 439 SSLVDGDVVVV--KS 451
           S     D V++  K 
Sbjct: 460 SKACSDDFVLILGKG 474


>gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae TN]
 gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae Br4923]
 gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase
           [Mycobacterium leprae]
 gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae]
 gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 530

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 171/485 (35%), Gaps = 55/485 (11%)

Query: 7   FHDLLQAIQGHSIGI------VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +L+  +             VP   V G+++ ++ +   + F A+ G    G  +   A
Sbjct: 21  LPELVAQVGAVLADGPGQAATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAGVA 80

Query: 61  VQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGS 116
           +++GA  V+ +   VA + +   S+P+    +    L     A      ++ T++ ITG+
Sbjct: 81  LERGAVAVLTDVAGVAELTAQASSVPILIHPEPRSVLGGLAAAAYGHPSNRMTVVGITGT 140

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------------PLTLARM-PVDV 160
            GKTTT  M+   L +  +    +G+    I                    LA M    V
Sbjct: 141 SGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVERGV 200

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLE 218
           +  + E+    L   R      +  +A  T ++  HL     +EE   AKA +F+   L 
Sbjct: 201 ETVVMEVSSHALSLGR--VEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSLL 258

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQL 276
           +  T+ +  DD         + A     I      + A ++    +     +  +  V  
Sbjct: 259 RARTVVVCIDDDAG----RATAARAGDAITVSALGQPASWRATDIRSPGVGAQEFTAVDP 314

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G    V     G +   N L+ L I+ ++    + A      F      G+  R    Q
Sbjct: 315 AGVQHRVGIRLPGRYNVANCLVALAILDVVGVSPEQA---SLGFRDIRIPGRLERIDCGQ 371

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEV 395
            F  L+D  Y   P ++ + ++ L Q     + R   V G   E     ++   ++ AE+
Sbjct: 372 DFLALVD--YAHKPGALHSVLTALLQ----PDHRLAVVFGAGGERDPGKRAPMGEIAAEL 425

Query: 396 LSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             L  ++     G    A++        A   +  V           +  +     DVV+
Sbjct: 426 ADLVVVTDDNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVL 485

Query: 449 V--KS 451
           V  K 
Sbjct: 486 VAGKG 490


>gi|51595039|ref|YP_069230.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 32953]
 gi|150260409|ref|ZP_01917137.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|167469525|ref|ZP_02334229.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis FV-1]
 gi|218927752|ref|YP_002345627.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis CO92]
 gi|229837053|ref|ZP_04457218.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|229840444|ref|ZP_04460603.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843014|ref|ZP_04463164.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900779|ref|ZP_04515903.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|20532169|sp|Q8ZIE8|MURC_YERPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798206|sp|Q66EK4|MURC_YERPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082521|sp|A7FM65|MURC_YERP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082522|sp|Q1C215|MURC_YERPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082523|sp|Q1CMM6|MURC_YERPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082895|sp|A4TQ82|MURC_YERPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51588321|emb|CAH19929.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|115346363|emb|CAL19235.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis CO92]
 gi|149289817|gb|EDM39894.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|229682118|gb|EEO78210.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|229689890|gb|EEO81949.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696810|gb|EEO86857.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705996|gb|EEO92005.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|320016922|gb|ADW00494.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 491

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 143/419 (34%), Gaps = 45/419 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  ML
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAML 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++ Q K  +EV  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +  ++AL  F     R              +    ++ + Y  +P  + A I  
Sbjct: 306 EEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                     +RI +L         ++  + D A VLS  ++     V+ +G   +   D
Sbjct: 366 ARA---GWPDKRIVMLFQ-PHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 421

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             AL R+I              +     +   L   D+++V+ + + G  ++   L E 
Sbjct: 422 SRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGNIG--KIARKLAEH 478


>gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 481

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 174/496 (35%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH        F + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFKK-EYLLSAISQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYHILSQRYPT-ALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVKNGRTHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  +   ++ +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLL---MKNSRAVVI 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +  DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQEHDFYGSQSSNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         +A+ + +   I   V      +       +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E++P
Sbjct: 459 C---YQIVQGKKEDYP 471


>gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
 gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
          Length = 460

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 140/372 (37%), Gaps = 38/372 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKT+T  M+   L  +       IG   +++     L +      F + E   
Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDYLKGSSCLGKG----HFSVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     + PH  VIT I   H+ ++  ++ + +A  E  E L + G   +  D+
Sbjct: 164 SDGSFLK-----LHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPEAGKAIVCGDN 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                + ++      +T  ++G   N D+  +           +V  +G ++  +     
Sbjct: 219 ENIRYVMSRVK----RTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGINIGRISLCVP 274

Query: 289 GYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N L    +       +     KAL  F    G  +R+    +     ++D+ Y 
Sbjct: 275 GEHNVLNSLAAFIVAHECCGVENRFITKALGKF---IGAKRRFETKGHVAGVWVVDD-YA 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  +KA +    ++  H   R I V          +     + A          +  +
Sbjct: 331 HHPTEIKATLRAAKELEKH---RVICVF--QPHRYTRTSLLKDEFATAFTSADEIYMTDI 385

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     ++G     + DA+  + H  VHY  ++D +   +   +   D+V+   + S  
Sbjct: 386 YSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRPNDLVITMGAGSIN 445

Query: 457 FY--RLINLLLE 466
            Y  +L+ +L E
Sbjct: 446 QYGPKLLAILEE 457


>gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
 gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
          Length = 490

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 166/465 (35%), Gaps = 47/465 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   V+   + +A+  S
Sbjct: 11  DVPGRALREMTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGIAADAS 70

Query: 81  LS----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134
           ++    +PV  + ++   L++LA     +      +I +TG+ GKTTT ++L     ++ 
Sbjct: 71  ITAMHGVPVIYLSNLNQHLSRLAGQFYQQPGAALRLIGVTGTNGKTTTTQLLAQWSQALG 130

Query: 135 KTYACIGSYNNHIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +                    V+    +  + +S  G ++    
Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGLVQNRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--- 237
            +    AV T ++  HL     +     AK  +F   +      +N DD       +   
Sbjct: 191 ALPFAAAVFTNLSRDHLDYHGDMASYELAKWLLFSTHQSEHK-IINADDDVGLRWLSQLP 249

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A+ ++     G S                + +         ++    +G     N+L
Sbjct: 250 QAVAVSMENKVPQGWS-GPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAFNVSNLL 308

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L  +  L   +   + A     P  GR + +    N      +   Y   P +++ A 
Sbjct: 309 VALSTLLSLDYPLADLLAAAPQLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA- 363

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
             L+    H +G+   V G   +  +  +     +AE L+      V ++  +  +    
Sbjct: 364 --LAAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQLA----DRVVVTDDNPRSEEPQ 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +   L  +  V                  + DVV+V  K 
Sbjct: 418 AIVADILGGLMDAGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKG 462


>gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-23m63]
 gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
 gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
          Length = 450

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 149/377 (39%), Gaps = 37/377 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+                +  I V   L+ +  +V  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSTIFEYAD--------LDPTILVGGNLSMIGGNVKIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                ++   E         P I+++  +   HL  FSGI+EI ++  +  + L   G  
Sbjct: 150 NSNHFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFGKLLPPEGYF 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM- 281
            +N DD   + +     A    TI  +G+  + D  ++      S      ++ QG+ + 
Sbjct: 210 IINGDDENIDDILYDVKA----TIIKYGRDSDNDAVIKDIHFDNSGHGIFRIEYQGRDLG 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E      G H   N    +    +   D++T           +G G+R+          +
Sbjct: 266 EFELSVYGLHNIYNASSAIMAALVSGIDLETI---RKNIKIYKGVGRRFETKGYYKNALV 322

Query: 342 IDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFH-ID 391
           +D+ Y  +P  +KA ++   ++          PH   R  ++LG      E S++F+  D
Sbjct: 323 VDD-YAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLLG------EFSEAFYAAD 375

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +  +Y          H   L + L   ++   Y +  + +  +++ ++ D D+V+  
Sbjct: 376 KVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVITA 435

Query: 451 SSNSCGFYRLINLLLEE 467
            +     Y++ +LL+E+
Sbjct: 436 GAGPI--YKVADLLVEK 450


>gi|75675245|ref|YP_317666.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
 gi|109892715|sp|Q3STS7|MURC_NITWN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74420115|gb|ABA04314.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
          Length = 467

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 143/415 (34%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA ++VV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  NGADVLVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    ++ + E   S    ++
Sbjct: 116 HGKTTTTSMVATLLDAGDFDPTVIN--GGIINAYGTNARLGAG-EWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T +   HL +F   + +  A     E +   G   +  D    + + 
Sbjct: 173 -----LPTDVAIVTNVDAEHLDHFKTFDAVQDAFRSFVENVPFYGFAVMCIDHPVVQAMV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIG 289
            +      + I ++G++  AD +L         S  +V  + +  +  H          G
Sbjct: 228 GRIE---DRRIITYGQNPQADVRLVDLAPNGGGSHFKVMFRNRKTDAAHEISDLVLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L     T  KAL+ F   +   +R+         T+ID+ Y  +
Sbjct: 285 PHNALNATAAIAVAHELGITDATIRKALAAFGGVK---RRFTRTGEWNGVTVIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    +     +GR IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARE---STDGRVIAVVQPHRYTRLQALFEEFCTCFNDADTVVVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H       +   L   I      GD VV   + + 
Sbjct: 398 ETPIVGIDRDHFVLGLRAHGHREVVPLPESAALAGIIADLAKQGDYVVCLGAGNI 452


>gi|37678799|ref|NP_933408.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus YJ016]
 gi|44888162|sp|Q7MNV0|MURC_VIBVY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|37197540|dbj|BAC93379.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
          Length = 486

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 139/405 (34%), Gaps = 40/405 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVKAAREARIPVVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +                I E   S    +      ++P + ++T I
Sbjct: 147 AGLD---PTFVNGGLVKSAGTNARLGSSRILIAEADESDASFLH-----LQPMVCIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRIS----RQVITYG 254

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  + Q  +Q    V  +  +++++  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIENYHQEGQQGKFTVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + A+        R +            ++ + Y  +P  +   I      +   + R
Sbjct: 315 DAILAAMIGTQGTGRRFEHLGEFETGNGNVMLVDDYGHHPTEVDVTIHAAR--NGWQDKR 372

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH 425
            + +          ++  + D A VL   ++     V+ +G   +A  D  +L R+I   
Sbjct: 373 LVMIF--QPHRYSRTRDLYDDFANVLEQVDVLVMLDVYAAGEKAIAGADSRSLCRTIRSR 430

Query: 426 ------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +      L   + + L +GD+++ + +   G  ++   L
Sbjct: 431 GKIDPIFVADTQQLPEVLANILQEGDLLLAQGAGDIG--KVARQL 473


>gi|56412401|ref|YP_149476.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361337|ref|YP_002140972.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|59798120|sp|Q5PDC7|MURC_SALPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620429|sp|B5BLC3|MURC_SALPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56126658|gb|AAV76164.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092812|emb|CAR58238.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 491

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|163814710|ref|ZP_02206099.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
 gi|158450345|gb|EDP27340.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
          Length = 460

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 141/414 (34%), Gaps = 42/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +   +     IP+     +LG + +             IA++G+ GKTTT  M
Sbjct: 77  AAIHPDNEEFKAAVEKGIPMLTRAQLLGQIMENYKY--------SIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L             +  I V   L  +  ++  G  E  ++   E     H  +P 
Sbjct: 129 LSYILIDAD--------TDPTISVGGILDSIGGNIRVGKSEYFVTEACEYTNSYHAFKPF 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  +   HL  F  I+EIA +         K G + +N D  +++ +          
Sbjct: 181 ISIILNVDADHLDFFKDIDEIAESFHVFATKTPKEGLVIVNGDMEYYDTVVRDLEC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            I +FGK     +     +          + + GK + ++     G H   N L  +   
Sbjct: 237 RIVTFGKGTQNKYSAHNIRFDDLGHPTYTLVVDGKEVTDITLRVFGEHNVYNSLSAIAAA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L   +D   +         G  +R+           + + Y  +P  + A +      
Sbjct: 297 LELGISIDVIKQG---LSECVGAERRFEYKGTILDNVRVMDDYAHHPTEISATLKAAQNT 353

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  +  E   L    H+ +A++ +        +S      L
Sbjct: 354 SYNELWCVFQPHTYSRTYALFDEFAE--ALKVCDHVIVADIYAAREKDTGLVS---AKQL 408

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +        Y  + D +  ++  +    D+++   + +   Y + N L+++
Sbjct: 409 AEKIAESGTDAFYLPSFDDIENYLLKNCKKNDLLITMGAGNV--YSIGNDLIKK 460


>gi|206578645|ref|YP_002240437.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288937137|ref|YP_003441196.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|290512560|ref|ZP_06551926.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
 gi|226706325|sp|B5Y1U6|MURC_KLEP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206567703|gb|ACI09479.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288891846|gb|ADC60164.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|289774901|gb|EFD82903.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 491

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 136/412 (33%), Gaps = 53/412 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K + +V  +  G H A N    + + +    D    +
Sbjct: 256 ADVRVEDYRQLGAQGHFRLVRQDKEILQVTLNAPGRHNALNAAAAVAVATEEGIDDQAIL 315

Query: 315 KALSVFHPKEGRGKRY---------RCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +AL  F    G G+R+               G   LID+ Y  +P  + A I       P
Sbjct: 316 RALESFQ---GTGRRFDFLGEFPLAEVNGKPGSAMLIDD-YGHHPTEVDATIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKD 416
                   V+         ++  + D A V         L +Y      + G    +L  
Sbjct: 372 DKN----LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCR 427

Query: 417 ALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +     V              + S L   D+V+V+ + + G  ++   L E
Sbjct: 428 TIRGRGKVDPILVSDPAQAAEMLASVLTGNDLVLVQGAGNIG--KIARHLAE 477


>gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
 gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/419 (20%), Positives = 155/419 (36%), Gaps = 46/419 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV++ + A    L+      IPV    D L         ARL  
Sbjct: 60  GH--AAEHLADDASCVVVSSAIRADNPELARAAERGIPVVHRSDAL---------ARLMD 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML ++L+++ +             +   L     +   G  E
Sbjct: 109 GLRPIAVAGTHGKTTTTSMLAVSLTALGR--------EPSYAIGGDLDAPGSNALHGEGE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E     H   P +A++  +   H +N++ ++EI  +       +   GT+ ++
Sbjct: 161 IFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYESFETFAGRVVPGGTLVVS 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      L  +  A  ++T+ ++G +++AD ++         S + V+L G  +     
Sbjct: 221 ADHEGARELTRRL-AKTVRTV-TYGAAEDADVRVLSVVPHGLTSEVTVELDGAPLTFTVS 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L     L         AL+ +   +   +R +     G   ++ +SY
Sbjct: 279 VPGRHYAHNAVAALVAGRALGIPAAELAPALAAYTGVK---RRLQLKGEAGGVQVV-DSY 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +        GR + V      +   +Q    ++ E L+L + S V  
Sbjct: 335 AHHPTEMTADLEAMRS---GTRGRILVVF--QPHLFSRTQELGKEMGEALALADASVVLD 389

Query: 405 -------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   L G     + DA       V     M  +   +      GD+V+   +   
Sbjct: 390 IYPAREDPLPGVTSELIIDAARAAGADVRAVHGMAEVPEALAGMAEPGDLVLTMGAGDV 448


>gi|16759124|ref|NP_454741.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140674|ref|NP_804016.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194445444|ref|YP_002039361.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247646|ref|YP_002145115.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242404|ref|YP_002214081.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855643|ref|YP_002242294.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213052847|ref|ZP_03345725.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426154|ref|ZP_03358904.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213621331|ref|ZP_03374114.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|238911186|ref|ZP_04655023.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823733|ref|ZP_06543345.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20532168|sp|Q8Z9G8|MURC_SALTI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706327|sp|B5F7W5|MURC_SALA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706328|sp|B5FI73|MURC_SALDC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706329|sp|B5R2M5|MURC_SALEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620428|sp|B4SU51|MURC_SALNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293609|pir||AF0518 UDP-N-acetylmuramate,alanine ligase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501414|emb|CAD01286.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136298|gb|AAO67865.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194404107|gb|ACF64329.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197211349|gb|ACH48746.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197936920|gb|ACH74253.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707446|emb|CAR31719.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621825|gb|EGE28170.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 491

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|268679675|ref|YP_003304106.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617706|gb|ACZ12071.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 476

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 127/347 (36%), Gaps = 30/347 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162
            R    +IAIT S GKT+ K  L   LS     Y    S N   G+   +   +P   D 
Sbjct: 151 QRPSMKVIAITASYGKTSIKNFLASILSKEFNVYHTPRSVNTLAGIVKDINNDLPDTCDI 210

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G    G+I  +   V PHIAV+  I   H+  F  +E I + K E+         
Sbjct: 211 YIVEAGARMQGDIDEIARCVNPHIAVVGRIGEQHIEYFKTLENIRNTKMEMIHSNRLQKA 270

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                           +      TI SFG        +++ K   +     + L+GK   
Sbjct: 271 FI-----------HESAQIKETPTILSFGSE------IKEVKASLDGLTFSMLLEGKEEH 313

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+   + +   L   ++   +A+      E R ++       G   +I
Sbjct: 314 FSASLLGDFNAINLAACVHVARELGMSIEMIQEAMRELKGVEHRLQKIE----AGGKIII 369

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+N N   M ++  ++S    H EGR++ V   + E  E +      LAE +      
Sbjct: 370 DDSFNGNLEGMLSSYELVS----HYEGRKVIVTPGIVESTEEANKC---LAEKIDAI-FD 421

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V ++G   + + D   +            L   +      GD+++ 
Sbjct: 422 VVIITGKSNMPILDLHVKRAQKILLSDKSELQALLAEQTYAGDLILF 468


>gi|322436296|ref|YP_004218508.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321164023|gb|ADW69728.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 463

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 149/417 (35%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V    +  IPV    ++L  L +L            IA+ G  GKTTT  M
Sbjct: 79  SAVSKDNPEVLEARARKIPVIQRAEMLAELMRLKYG---------IAVAGMHGKTTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+         G  +  + V   +  +  +   G  +  ++   E       + P 
Sbjct: 130 IAAVLAG--------GGLDPTVVVGGRVDALGSNARLGTSQYLVAEADESDRSFLKLSPI 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   H   +  ++++ +A  +  + L   G      D+     +  +      +
Sbjct: 182 LAVVTNLDREHTDCYPTMDDVDAAFLQFMDALPFYGATTACIDNERLRGILPRVR----R 237

Query: 246 TIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            +Y++G+S +ADF+L         +S  EV  +G  +     H  G H   N    + + 
Sbjct: 238 KVYTYGESHDADFRLEMLPGVDGVRSTFEVNYRGLLLGPFELHVPGRHNVLNATAAIAVG 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D  +  K L+ F   +   +R++     G   ++D+ Y  +P  + A    L   
Sbjct: 298 VQLGIDPASIAKGLATFRGVD---RRFQLKGTVGGIAVVDD-YGHHPTEITA---TLKAA 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHID---------LAEVLSLYNISHVWLSGFHVLAL 414
              G GR + V          ++    +           ++L +Y  S   + G    AL
Sbjct: 351 RDCGYGRVLVVF--QPHRYTRTRDLMPEFAAAFGDADAIQILDIYAASEQPIPGITGEAL 408

Query: 415 KDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              + +       Y+ ++      + +    GDV++   + +     +   LLE   
Sbjct: 409 AQQIAQQTDGRATYAPSVAAAIAALTAQARPGDVIMTLGAGNV--SAIAPQLLEALK 463


>gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
 gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/526 (15%), Positives = 138/526 (26%), Gaps = 104/526 (19%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G S        V G++ DSR +     FFA+ G H  G+ FI  AV  GAG VV   ++
Sbjct: 25  DGISSPKNTDACVEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVVFQDEI 84

Query: 75  VASIGSLS----------IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
                S            +    V     A++           SK  +  +TG+ GK++T
Sbjct: 85  TQEEHSQIKEALASSSKKVVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYGVTGTEGKSST 144

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARMPVD-VDFGI 164
              +   L         I +    +                  V   L  M  +     +
Sbjct: 145 VSFIWQLLRLNGIKAGFISTVQYSLGGDAIDNPQHQTTPEAPVVQRELYEMVCNGCTHAV 204

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---- 220
            E     L +       V    AV   +   HL      E+  S KA +F  L+      
Sbjct: 205 VESSSHGLSKKLNRLGNVLFDCAVFMNVTLEHLEFHGTYEQYKSDKANLFRALDLHNHEK 264

Query: 221 ---GTI-------FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------------- 257
              G          +N +D       + +          F     A              
Sbjct: 265 TIAGVATKIPAFGVVNLEDPAASYFASCTK----HKTIGFTTEGKAGKQAALGLSSPPLP 320

Query: 258 --------FQLRKWKQCSEQSWMEVQL---------QGKSMEVVHHGIGYHMAQNMLMT- 299
                   F  R            +           +   + V     G   A N+    
Sbjct: 321 EIPKDMPYFSCRNIASARFGLAFSIHRFETHDSLNNENSVVHVKASVPGAFNAYNITAAI 380

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L +       ++            +G   R         F +I + Y   P+S +     
Sbjct: 381 LAVHGTTGISIEKLALCAQKLTSVKG---RMTVIDEGQPFEVIVD-YAHTPSSFETIFPP 436

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L   +    G+ I V G   E     +    ++A          V L+            
Sbjct: 437 LKNRA---MGKMICVFGSGGERDTTKRPLQGEIAARF----CDIVILTDEDPRKEDRMTI 489

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  A K+    ++ +              S   + D+V++  
Sbjct: 490 IEQIALGARKEGKKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLG 535


>gi|190149288|ref|YP_001967813.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262601|ref|ZP_07544231.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470255|sp|B3GZK9|MURC_ACTP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189914419|gb|ACE60671.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872024|gb|EFN03738.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 152/449 (33%), Gaps = 54/449 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGAL 95
            A  G       FI H  +  AG  VV            V +     IPV     +L  +
Sbjct: 59  LAEAGAKV----FIGHQAENVAGASVVVASSAIDDSNPEVRAAKEARIPVIQRAQMLAEI 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IA+ G+ GKTTT  M+++  +  K         N  +        
Sbjct: 115 MRFR---------HGIAVAGTHGKTTTTAMISMIYTEAKLD---PTFVNGGLVKSAGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++ +   +  
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     +  +      + + ++G S+ AD+++  ++Q   Q    V
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPQV----GRQVLTYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ ++V+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +   I                 PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSL 441
              +       +L +Y      + G    AL  ++     V        D L   +   +
Sbjct: 394 QVDAL-----IMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQII 448

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            DGD+++ + + S    R+   L E + A
Sbjct: 449 QDGDLILAQGAGSV--SRISRGLAESWKA 475


>gi|257082265|ref|ZP_05576626.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256990295|gb|EEU77597.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 445

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 68  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 100

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 101 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 152 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 204

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 205 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDDFVG 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 259 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 314 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 367

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 368 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 421

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 422 GAGDVQKFEQAYETLL 437


>gi|205351468|ref|YP_002225269.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226706330|sp|B5RH65|MURC_SALG2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|205271249|emb|CAR36037.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626495|gb|EGE32838.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 491

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 130/408 (31%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y        G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPTPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|311280929|ref|YP_003943160.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
 gi|308750124|gb|ADO49876.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
          Length = 491

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 135/408 (33%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M+    +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVASIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +     +  + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGNSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  + Q   Q    +  Q K+ + VV +  G H A N    + + +    D ++ +
Sbjct: 256 ADVRVEDYSQIGAQGHFTLIRQDKAVLNVVLNAPGRHNALNAAAAVAVATEEGIDDESIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL+ F     R         +    +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALASFQGTGRRFDFLGEFPLQEVNGKSGSAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKVDPILVSDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARNLAE 477


>gi|84516388|ref|ZP_01003747.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
 gi|84509424|gb|EAQ05882.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
          Length = 471

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 143/410 (34%), Gaps = 47/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV+++ +      L       +PV    D+L  L +L            +A+ G+
Sbjct: 75  AGAEVVVISSAIKPGNPELDAARATGLPVVRRADMLAELMRLKSN---------VAVAGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L          G  +  +     +     +   G  E  +    E  
Sbjct: 126 HGKTTTTTMVAALLDE--------GGIDPTVINGGIIHAYGSNARMGQGEWMVVEADESD 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++  IE +     +    +   G      D    + L 
Sbjct: 178 GTFNRLPATIAIVTNIDPEHMEHWGTIENLRKGFYDFVSNIPFYGLAVCCTDHPEVQALV 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMA 293
            +   +  + + +FG +  AD +       +  +  ++ LQ +            G H  
Sbjct: 238 GR---ITDRRVVTFGFNAQADVRAINLTYKAGVAHFDIALQSEDQVIAGCSLPMPGDHNV 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L    D    AL+ F       +R+         T+ID+ Y  +P  +
Sbjct: 295 SNALAAVAVARHLGLKKDEIRAALAGFGGVN---RRFTKVAEVNGVTIIDD-YGHHPVEI 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHV 411
            A +    Q +    GR IAV         LS  F    A      +  IS V+ +G   
Sbjct: 351 AAVLRAARQATT---GRVIAV-HQPHRFSRLSHHFDEFCACFNDADVVGISEVYAAGEDP 406

Query: 412 LA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +A      L   L R  H H     + D L   ++     GD+VV   + 
Sbjct: 407 IAGASHADLVAGLIRHGHRHARIVNSEDDLERLVREQAKPGDMVVCLGAG 456


>gi|315504606|ref|YP_004083493.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5]
 gi|315411225|gb|ADU09342.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5]
          Length = 493

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 150/399 (37%), Gaps = 36/399 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A   +    +A+ G+ GKT+T  M+T+ L             +
Sbjct: 94  VEARRRGLRVLHRSEALAAAMTGRRTVAVAGTHGKTSTTSMVTMVLQQAG--------TD 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +   ++ +      G  E  +    E      + RP +++IT I   HL+ +  + 
Sbjct: 146 PSFVIGGEISEVGSGAHHGTGEHFVVEADESDRSFLIYRPFVSIITNIEADHLNTYGDLA 205

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            + +A AE     +  G +    DD+    L     A G + ++++G+S +AD ++ +  
Sbjct: 206 TLEAAFAEFARLTDPAGFVITCADDAGGCRLAETLRAEG-RRVWTYGESADADLRMSEVV 264

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             +     + +++G+ + E+     G HMA N    +    +L   V  A  AL  F   
Sbjct: 265 SSAHGVRYQAEVEGRPLGEIRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGAFPGV 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R           L+ + Y  +P SM  A+  L +++   +GR I V      +  
Sbjct: 325 RRRFER----KGAADGVLVYDEYAYHPTSMTLALQTLREVAG--DGRLIVVF-QPYRLYR 377

Query: 384 LSQSFHIDLAEVLSLYNI-SHVWL-----------SGFHVLALKDALP-RSIHVHYSETM 430
              +     AE+ +   I   V L            G    AL   +P  +    + E  
Sbjct: 378 TRDNQ----AEIAAALGIADEVVLLEVFGPGETRRPGEGSAALIQEVPLPAERKVFVEAW 433

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
           D +   +      GDVVV   +        +L++ LL  
Sbjct: 434 DDVPGEVARRARTGDVVVTMGAPPISLMGDQLLDALLAR 472


>gi|159044963|ref|YP_001533757.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
 gi|157912723|gb|ABV94156.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
          Length = 470

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 140/418 (33%), Gaps = 47/418 (11%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSI--------PVFGVDDVLGALNKLAVAARLRSK 107
           FI    +  A   VV        G+  +        PV    ++L  L +L         
Sbjct: 66  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRAEMLAELMRLKSN------ 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   L          G  +  +     +     +   G  E 
Sbjct: 120 ---IAIAGTHGKTTTTTMVATLLDR--------GGIDPTVINGGIIHAYDSNARAGAGEW 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   E +     E    +   G      
Sbjct: 169 MVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGSFERLKDGFHEFVSNIPFYGLAVCCT 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVV 284
           D    + L  +   +  + + +FG +  AD +       S  +  ++ L+ +        
Sbjct: 229 DHPEVQALVGR---ITDRRVVTFGFNTQADVRAVNLTYKSGVAHFDILLRNEGQVISGCT 285

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L    D    AL+ F    G  +R+      G  T+ID+
Sbjct: 286 LPMPGDHNVSNALAAVAVARHLGMKRDEIRAALAGF---AGVNRRFTKVAELGGVTIIDD 342

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSF-----HIDLAEVLS 397
            Y  +P  + A +    Q S   EGR IAV        +  L + F       D+  +  
Sbjct: 343 -YGHHPVEIAAVLKAARQAS---EGRVIAVHQPHRFSRLASLFEDFCTCFNEADVVGISD 398

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           ++      + G     L   L    H H       D L   I++    GD+VV   + 
Sbjct: 399 IFAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPDEDALEALIRAEAKPGDIVVCLGAG 456


>gi|167550676|ref|ZP_02344433.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168464319|ref|ZP_02698222.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632677|gb|EDX51131.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205324415|gb|EDZ12254.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 491

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG  ++ V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPNLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|294627725|ref|ZP_06706307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598077|gb|EFF42232.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 477

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 139/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             DT  +AL  F    G G+R+          G    + + Y  +P  ++A   V +   
Sbjct: 306 APDTIARALENF---AGIGRRFNDLGEVTTGTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAEVLLDVLQDGDLLLMMGAGDIG 461


>gi|168262186|ref|ZP_02684159.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348903|gb|EDZ35534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 491

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG  ++ V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPNLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
 gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
          Length = 495

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 163/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              D+L       +   P   +  + +DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDIL----APWVSDAPAVALKDMILDSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             VV         G++     +PV  ++D+   L++LA     +      ++ +TG+ GK
Sbjct: 61  AAVVAEAKGEQQHGTVCQMHGVPVVYLEDLNILLSELAGRFYQQPGKELRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +  A         +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLDNVIPAENTTGSAVQVQHILADLVKLGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     ++    AK ++F    + G   +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMQSYEDAKWQLFAS-HQVGQKII 239

Query: 226 NYDDSFFELLKAKSH---ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK+    A+ ++     G S       R        + + +       +
Sbjct: 240 NADDEVGARWLAKTPNAIAVSMEDKIPAGWSGRW-LVARSVNYHDNGATVNIDSSWGEGK 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +   S   P  GR + +    N       
Sbjct: 299 LESRLMGAFNVSNLLVALATLLSLDYPLAQLLATASQLQPVCGRMEVF----NAPGKPTA 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A   L+    H  G    V G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKA---LAAARLHCRGTLWCVFGCGGDRDKGKRPLMGAIAEQYA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L  +  V                  + DVV++  K 
Sbjct: 408 RVIVTDDNPRSEEPRAIVADILAGLLDAGRVQEIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|260853304|ref|YP_003227195.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257751953|dbj|BAI23455.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|323157842|gb|EFZ43945.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EPECa14]
          Length = 491

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|29376436|ref|NP_815590.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis V583]
 gi|255972446|ref|ZP_05423032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256959228|ref|ZP_05563399.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256961595|ref|ZP_05565766.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|257084882|ref|ZP_05579243.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|257090198|ref|ZP_05584559.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257416351|ref|ZP_05593345.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|257419600|ref|ZP_05596594.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257422294|ref|ZP_05599284.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300860238|ref|ZP_07106325.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888194|sp|Q833N6|MURC_ENTFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29343900|gb|AAO81660.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis V583]
 gi|255963464|gb|EET95940.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256949724|gb|EEU66356.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256952091|gb|EEU68723.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|256992912|gb|EEU80214.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|256999010|gb|EEU85530.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257158179|gb|EEU88139.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|257161428|gb|EEU91388.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257164118|gb|EEU94078.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300849277|gb|EFK77027.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
          Length = 445

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 68  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 100

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 101 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 152 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 204

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 205 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDDFVG 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 259 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 314 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 367

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 368 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 421

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 422 GAGDVQKFEQAYETLL 437


>gi|163784502|ref|ZP_02179369.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880227|gb|EDP73864.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 412

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 153/443 (34%), Gaps = 55/443 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F      +  G D +++     +  V  +   +     LSIPV    ++L  L +    
Sbjct: 10  VFIGHSKENVHGADVVVY-----SSAVKEDNPEIIEAKKLSIPVIPRGEMLAELMRFKYG 64

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
                    IAI GS GKTTT  M+   L          IG      G    L R     
Sbjct: 65  ---------IAIAGSHGKTTTTSMVGSILGKTGYDPTVVIGGKLEAYGSNAKLGRG---- 111

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           DF + E   S    +R     + P I  I  I   H+  +  +++I  A  +    +   
Sbjct: 112 DFLVAEADESDGSFLR-----LSPTIVSINNIDLEHVGYYRNLDDIKKAFIKFANKVPFY 166

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G + LN DD   + +  K      K +  FG ++K+AD    + +  +     +V   G+
Sbjct: 167 GAVALNIDDKNVKDILPKIE----KKVIKFGIENKDADINAYELELVNGTYRFKVNDLGQ 222

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +     G H   N L  + I   L        + L  F       +R+    +    
Sbjct: 223 ---IHLSVPGKHNVYNALTAVAIADELGIPFCVVKETLENFKNAS---RRFEIKYDGNIK 276

Query: 340 TLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  + Y  +P+ +KA I                 PH   R  ++     E    S +  
Sbjct: 277 VI--DDYAHHPSELKATICAAKDKYPDRRIITVFQPHRYTRLHSLFNQFAESFGNSDT-- 332

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                +  +Y+     +       L + +  +   V++++ +  +   ++  + +GDVV+
Sbjct: 333 ---VIITDIYSAGEKPIENISAEKLTEKIKEKGKEVYFAKYLSDVENMLKEMIKEGDVVL 389

Query: 449 VKSSNSCGFYRLINLLLEEFPAI 471
           +  + +    ++   L +    I
Sbjct: 390 ILGAGNI--TQVAEKLAKYLEGI 410


>gi|323190227|gb|EFZ75503.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli RN587/1]
          Length = 491

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    + +L  + M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRLDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|294666420|ref|ZP_06731664.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603789|gb|EFF47196.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 477

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 139/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             DT  +AL  F    G G+R+          G    + + Y  +P  ++A   V +   
Sbjct: 306 APDTIARALENF---AGIGRRFNDLGEVTTGTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
 gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
          Length = 485

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 155/474 (32%), Gaps = 45/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL  A +           + G+++DSR++ P + FFA+ G   DG  F+  A+   
Sbjct: 1   MKLRDLFSA-ETEIAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFVAAAIA-- 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               V         G L++P   + +   AL + A     R    I A+TG+ GKT+   
Sbjct: 58  -AGAVAVAGEHPPAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAVTGTSGKTSVAA 116

Query: 125 MLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVD-----VDFGIFELG 168
                   +    A IG+                  P+ L R   +     +     E  
Sbjct: 117 FTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAGEGITHLALEAS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNY 227
              L + R     VR      T ++  H+     +    +AK  +F  L +  G   +  
Sbjct: 177 SHGLDQFRL--DGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRHLVQDGGAAVIAA 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           D      +   + A G++ + + G++ +      L           + V   G+   +  
Sbjct: 235 DHDCSAEVIEAAGARGLR-LITIGRNGDPGEGIALIDAAIDGFAQILTVAHAGRRYSIKL 293

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G    +N L+  G+V     D   +  AL       GR        ++G    +D  
Sbjct: 294 PLVGEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDL--VGAHRGAPVFVD-- 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++  ++  L    P+ + + + V G     G    +    L   ++  +   V 
Sbjct: 350 YAHKPDALAKSLQALR---PYAKRKLVVVFG----AGGDRDAGKRPLMGAIAAEHADTVI 402

Query: 406 LSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +          L  +                   L  GD +V+  K 
Sbjct: 403 VTDDNPRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKG 456


>gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 471

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 159/450 (35%), Gaps = 39/450 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR  A  + F A+ G   DG  +I  A+ +G   V+      A+ G +     +PV  
Sbjct: 3   LDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIY 62

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           +  +   L+ L          +  ++ +TG+ GKTTT +++      + +T A +G+  N
Sbjct: 63  LSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGN 122

Query: 146 HIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITT 191
            +   ++           +                + +S  G ++     ++   +V T 
Sbjct: 123 GLLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAASVFTN 182

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E   +AK  +       G   +N DD       AK       ++    
Sbjct: 183 LSRDHLDYHGDMEHYEAAK-WLLYSTHHHGEAIVNADDEVGRRWLAKLPDAVAVSMEDH- 240

Query: 252 KSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            + N      +  + K     + + V       E+    +G     N+L+ L  +  L  
Sbjct: 241 INPNCHGRWLKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALATLLALGY 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   +K      P  G   R       G  T++ + Y   P +++ A+        H  
Sbjct: 301 PMAELLKTAERLQPVCG---RMEVFSAPGKPTVVVD-YAHTPDALEKALEA---ARLHCA 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVHY 426
           G+   V G   +  +  +     +AE  +   +       +      + D L   +    
Sbjct: 354 GKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDILAGMLDAGR 413

Query: 427 SETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +  ++G    + +++    + DVV++  K 
Sbjct: 414 ARVVEGRAEAVTNAIMQAQENDVVLLAGKG 443


>gi|257454702|ref|ZP_05619958.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
 gi|257448012|gb|EEV22999.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
          Length = 504

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 150/415 (36%), Gaps = 48/415 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ +  +   +       IPV    D+LG L +             IA+ G+ G
Sbjct: 99  ADVVVVSSAIDHTNPEIQAALSGRIPVVRRADMLGELMRYR---------HGIAVAGAHG 149

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  +LT+ L+        +      IG  L  +     +    + +  +   +  FL
Sbjct: 150 KTTTTSLLTMILTEAGLDPTYV------IGGKLNASGKNASLGQSRYLVAEADESDASFL 203

Query: 179 THLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +  +RP  A++T I   H+  +    +++ +A  +  + +   G   L  DD     L  
Sbjct: 204 S--LRPMAAIVTNIDQDHMETYGGSFDKLKAAYVQFLQNMPFYGLAVLCGDDKELYGLID 261

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
           K      + + ++G  K+ D Q         ++   V  + +  + +  +  G H   N 
Sbjct: 262 KIA----RPVLTYGLEKHNDVQAIDVVADGTKTHFTVLRKDREPLPITLNIPGIHNVYNA 317

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPASM 353
           L  + I +      +   +A+  F     R +    Y      G   LID+ Y  +P  +
Sbjct: 318 LAAITISTDEGVSDEAICQAVKKFAGVGRRFENNGNYPVKDGAGDVLLIDD-YGHHPTEV 376

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVW 405
              I    Q       RR+ ++            F         +D+  +L +Y+     
Sbjct: 377 AMTIKAARQ---SYPDRRLVMIFQPHRFTRTRDCFDDFVDVLSQVDVLMLLDVYSAGEAV 433

Query: 406 LSGFHVLALKDALPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + G    +L   +     V         MD +   + S L   D+++ + + + G
Sbjct: 434 IEGADSRSLARTIRTRGQVEPIMLNINDMDQIRQVLGSMLKGNDLLITQGAGNVG 488


>gi|189029207|sp|A8LS63|MURC_DINSH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 464

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 140/418 (33%), Gaps = 47/418 (11%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSI--------PVFGVDDVLGALNKLAVAARLRSK 107
           FI    +  A   VV        G+  +        PV    ++L  L +L         
Sbjct: 60  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRAEMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   L          G  +  +     +     +   G  E 
Sbjct: 114 ---IAIAGTHGKTTTTTMVATLLDR--------GGIDPTVINGGIIHAYDSNARAGAGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   E +     E    +   G      
Sbjct: 163 MVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGSFERLKDGFHEFVSNIPFYGLAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVV 284
           D    + L  +   +  + + +FG +  AD +       S  +  ++ L+ +        
Sbjct: 223 DHPEVQALVGR---ITDRRVVTFGFNTQADVRAVNLTYKSGVAHFDILLRNEGQVISGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L    D    AL+ F    G  +R+      G  T+ID+
Sbjct: 280 LPMPGDHNVSNALAAVAVARHLGMKRDEIRAALAGF---AGVNRRFTKVAELGGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSF-----HIDLAEVLS 397
            Y  +P  + A +    Q S   EGR IAV        +  L + F       D+  +  
Sbjct: 337 -YGHHPVEIAAVLKAARQAS---EGRVIAVHQPHRFSRLASLFEDFCTCFNEADVVGISD 392

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           ++      + G     L   L    H H       D L   I++    GD+VV   + 
Sbjct: 393 IFAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPDEDALEALIRAEAKPGDIVVCLGAG 450


>gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630]
 gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-66c26]
 gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP
           107932]
 gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-63q42]
 gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC
           43255]
 gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-76w55]
 gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-97b34]
 gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-37x79]
 gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
 gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-32g58]
 gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           difficile]
 gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
          Length = 450

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 149/377 (39%), Gaps = 37/377 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+                +  I V   L+ +  +V  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSTIFEYAD--------LDPTILVGGNLSMIGGNVKIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                ++   E         P I+++  +   HL  FSGI+EI ++  +  + L   G  
Sbjct: 150 NSNHFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFGKLLPPEGYF 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM- 281
            +N DD   + +     A    TI  +G+  + D  ++      S      ++ +G+ + 
Sbjct: 210 IINGDDENIDDILYDVKA----TIIKYGRDSDNDAVIKDIHFDNSGHGIFRIEYEGRDLG 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E      G H   N    +    +   D++T           +G G+R+          +
Sbjct: 266 EFELSVYGLHNIYNASSAIMAALVSGIDLETI---RKNIKIYKGVGRRFETKGYYKNALV 322

Query: 342 IDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFH-ID 391
           +D+ Y  +P  +KA ++   ++          PH   R  ++LG      E S++F+  D
Sbjct: 323 VDD-YAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLLG------EFSEAFYAAD 375

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +  +Y          H   L + L   ++   Y +  + +  +++ ++ D D+V+  
Sbjct: 376 KVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVITA 435

Query: 451 SSNSCGFYRLINLLLEE 467
            +     Y++ +LL+E+
Sbjct: 436 GAGPI--YKVADLLVEK 450


>gi|227519254|ref|ZP_03949303.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227555538|ref|ZP_03985585.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229549750|ref|ZP_04438475.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|293382403|ref|ZP_06628340.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|293388252|ref|ZP_06632768.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|307287939|ref|ZP_07567972.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|312900938|ref|ZP_07760232.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|312902694|ref|ZP_07761898.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|312908370|ref|ZP_07767334.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|312910557|ref|ZP_07769399.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|312950943|ref|ZP_07769853.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|227073266|gb|EEI11229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227175343|gb|EEI56315.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229305019|gb|EEN71015.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|291080179|gb|EFE17543.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|291082334|gb|EFE19297.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|306501084|gb|EFM70391.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|310625784|gb|EFQ09067.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|310631092|gb|EFQ14375.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|310633748|gb|EFQ17031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|311289105|gb|EFQ67661.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|311292037|gb|EFQ70593.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|315036717|gb|EFT48649.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0027]
 gi|315149313|gb|EFT93329.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0012]
 gi|315152214|gb|EFT96230.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0031]
 gi|315157019|gb|EFU01036.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0043]
 gi|315159827|gb|EFU03844.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0312]
 gi|315161519|gb|EFU05536.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0645]
 gi|315163609|gb|EFU07626.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1302]
 gi|315167362|gb|EFU11379.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1341]
 gi|315169555|gb|EFU13572.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1342]
 gi|315574498|gb|EFU86689.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309B]
 gi|315576957|gb|EFU89148.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0630]
 gi|315581840|gb|EFU94031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309A]
 gi|327535426|gb|AEA94260.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 79  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 111

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 112 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 163 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 216 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDDFVG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 270 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 325 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 378

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 379 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 432

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 433 GAGDVQKFEQAYETLL 448


>gi|331645201|ref|ZP_08346312.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
 gi|330909938|gb|EGH38448.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli AA86]
 gi|331045958|gb|EGI18077.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
          Length = 491

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
 gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
          Length = 511

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 148/484 (30%), Gaps = 46/484 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T H LLQA+        P   +  ++ DSR  +    F  + G   DG  F    +  GA
Sbjct: 4   TLHSLLQAVGLPVPEGCPNPAITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLADGA 63

Query: 66  GLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              V+ +        S     + V             A       + T+I +TG+ GKTT
Sbjct: 64  AAAVIGSAAALADPPSPADPVVVVADPVADWAGALAAAFWQYPSRRMTLIGVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIF 165
           T  ++      I ++ A  G+  N        +                           
Sbjct: 124 TTHLIEHICDQIGRSAALFGTLVNRWPGHSITSTHTTAFADRLQAQLAEAVAGGTQVAAM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTG-- 221
           E+    L + R      +   AV T +   HL     ++    AKA +F    L   G  
Sbjct: 184 EVSSHALDQGR--VAGCQFSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGEG 241

Query: 222 -TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGK 279
               +N DD + + L  +      +      +     +  +      S     E+     
Sbjct: 242 ARAVVNVDDPWGQKLADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPAG 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G     N+L  +G++      +   ++A + F    GR +R     +Q   
Sbjct: 302 RGAFQSPLVGAFNLMNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERVMLGSDQAMA 361

Query: 340 TL--IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            L  +   Y   P  ++   + L    P  +G  + V G     G+  +     +A V +
Sbjct: 362 DLPSVLVDYAHTPDGLR---NALLASRPFVKGDLVCVFGC---GGDRDRGKRPQMAAVAA 415

Query: 398 LYNISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   V  S          + D     +P    +            + +     D+V++
Sbjct: 416 ELSDRVVVTSDNPRTEDPQQILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLI 475

Query: 450 --KS 451
             K 
Sbjct: 476 AGKG 479


>gi|110804155|ref|YP_687675.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 5 str.
           8401]
 gi|123343170|sp|Q0T8A6|MURC_SHIF8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110613703|gb|ABF02370.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|332762093|gb|EGJ92362.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 4343-70]
 gi|333009336|gb|EGK28792.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-218]
 gi|333010587|gb|EGK30020.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri VA-6]
 gi|333011479|gb|EGK30893.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-272]
 gi|333021722|gb|EGK40971.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-227]
          Length = 491

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 541

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/486 (17%), Positives = 173/486 (35%), Gaps = 55/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L +      I +  +  V GIS+DSR+I P + + A+ G    G  F   AV  GA 
Sbjct: 25  LTELARFCG---IELDSKLQVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAV 81

Query: 67  LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++ +     + ++     +PV GV +       LA     R    +  +TG+ GKTTT 
Sbjct: 82  AILTDRAGAQIASAEVPQHVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTS 141

Query: 124 EMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFG-------------IFEL 167
            ++   L++++++   IG+         +P TL                       + E+
Sbjct: 142 YLIRSILAALERSSGLIGTIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEV 201

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R     +   +A  T +   HL     + E A+ KAE+F    ++    +  
Sbjct: 202 SSHALAYGR--VDGLVFDVAGFTNLTQDHLDLHGTMAEYAATKAELFSS-RRSKRAVVTV 258

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSEQSWMEVQ---LQG--K 279
           DD +   + A++    ++      ++     +D+++ K +       +E+      G  +
Sbjct: 259 DDQWGRQIAARADVPVLRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAER 318

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S +      G     N  + + +V     D     +AL    P           ++Q   
Sbjct: 319 SFKFTTSLPGEFNIANSALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLISQEPV 378

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  +  NP +++ A+  +   +    GR I V G     G+  Q+    +  + +  
Sbjct: 379 AVVD--FAHNPDALQRAMDAVRPNNNETRGRLITVFGA---TGQRDQTKRPIMGALAA-R 432

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETM-------DGLFLFIQSSLVD 443
               V ++               + D   +++     +T+               +    
Sbjct: 433 GSDVVIITDDDPHDEDPEQIRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGK 492

Query: 444 GDVVVV 449
            D +++
Sbjct: 493 DDAILI 498


>gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC8]
          Length = 520

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 39/378 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDG-------HDFILHAVQKGAGLVVVNTDMVASIG 79
            +   +DSR I   + F  +K    D        + +++      A ++     +   + 
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLD 100

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKK 135
            + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +   
Sbjct: 101 GIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGI 160

Query: 136 TYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + A +G              +    + +  T           +  L  S  G  ++    
Sbjct: 161 SSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQG 220

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKS 239
           V    A+ T ++  HL   + +     AKA++F+           +N DD          
Sbjct: 221 VPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF----D 276

Query: 240 HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I  + + K NADF  +  +   +   +EVQ     M  +   +G     N+L 
Sbjct: 277 YEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           ++   + L      A    ++    +G   R + A +Q    +ID  Y   P ++K    
Sbjct: 337 SMAAFTALN--PARAADLPNLITQLQGARGRMQRASSQTGAFIID--YAHTPDALK---Q 389

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS +  H  GR IAV G
Sbjct: 390 VLSSLRRHCTGRLIAVFG 407


>gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 103P14B1]
 gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 46P47B1]
 gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC1]
 gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC7]
 gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis O35E]
 gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 101P30B1]
          Length = 520

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 39/378 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDG-------HDFILHAVQKGAGLVVVNTDMVASIG 79
            +   +DSR I   + F  +K    D        + +++      A ++     +   + 
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLD 100

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKK 135
            + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +   
Sbjct: 101 GIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGI 160

Query: 136 TYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + A +G              +    + +  T           +  L  S  G  ++    
Sbjct: 161 SSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQG 220

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKS 239
           V    A+ T ++  HL   + +     AKA++F+           +N DD          
Sbjct: 221 VPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF----D 276

Query: 240 HALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I  + + K NADF  +  +   +   +EVQ     M  +   +G     N+L 
Sbjct: 277 YEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLA 336

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           ++   + L      A    ++    +G   R + A +Q    +ID  Y   P ++K    
Sbjct: 337 SMAAFTALN--PARAADLPNLITQLQGARGRMQRASSQTGAFIID--YAHTPDALK---Q 389

Query: 359 VLSQISPHGEGRRIAVLG 376
           VLS +  H  GR IAV G
Sbjct: 390 VLSSLRRHCTGRLIAVFG 407


>gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 477

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 140/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDSDHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  T  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 EPQTIARALENF---AGIGRRFNDLGEVTTSTGARVQVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQISGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|15799775|ref|NP_285787.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           EDL933]
 gi|15829349|ref|NP_308122.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. Sakai]
 gi|26246024|ref|NP_752063.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli CFT073]
 gi|91209155|ref|YP_539141.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UTI89]
 gi|157154862|ref|YP_001461261.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli E24377A]
 gi|157159562|ref|YP_001456880.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli HS]
 gi|168751399|ref|ZP_02776421.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755699|ref|ZP_02780706.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764030|ref|ZP_02789037.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771315|ref|ZP_02796322.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776935|ref|ZP_02801942.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781976|ref|ZP_02806983.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789618|ref|ZP_02814625.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801518|ref|ZP_02826525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|170683694|ref|YP_001742213.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SMS-3-5]
 gi|193065876|ref|ZP_03046937.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|193070828|ref|ZP_03051761.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194429353|ref|ZP_03061878.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194434422|ref|ZP_03066684.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194439419|ref|ZP_03071496.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|195939307|ref|ZP_03084689.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806463|ref|ZP_03248800.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812324|ref|ZP_03253653.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819975|ref|ZP_03260295.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400617|ref|YP_002268699.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215485257|ref|YP_002327688.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325189|ref|ZP_03441273.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552674|ref|YP_002385587.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI1]
 gi|218557031|ref|YP_002389944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli S88]
 gi|218687968|ref|YP_002396180.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ED1a]
 gi|218693560|ref|YP_002401227.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 55989]
 gi|237704240|ref|ZP_04534721.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|253774879|ref|YP_003037710.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160213|ref|YP_003043321.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|254791228|ref|YP_003076065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|256020071|ref|ZP_05433936.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sp. D9]
 gi|260842327|ref|YP_003220105.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260866244|ref|YP_003232646.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261226848|ref|ZP_05941129.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255252|ref|ZP_05947785.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291280916|ref|YP_003497734.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|293417967|ref|ZP_06660589.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|293476751|ref|ZP_06665159.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|297518216|ref|ZP_06936602.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli OP50]
 gi|300816129|ref|ZP_07096352.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|300821904|ref|ZP_07102048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300931782|ref|ZP_07147082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300938486|ref|ZP_07153226.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300981128|ref|ZP_07175374.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|301048483|ref|ZP_07195508.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|306815311|ref|ZP_07449460.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|312966219|ref|ZP_07780445.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|331661137|ref|ZP_08362069.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331666328|ref|ZP_08367209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331680665|ref|ZP_08381324.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332281221|ref|ZP_08393634.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|54037856|sp|P65471|MURC_ECO57 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041506|sp|P65470|MURC_ECOL6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122425020|sp|Q1RGA4|MURC_ECOUT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017280|sp|A7ZHI2|MURC_ECO24 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017281|sp|A7ZW43|MURC_ECOHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706321|sp|B5YZC7|MURC_ECO5E RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711864|sp|B7MAL4|MURC_ECO45 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711866|sp|B7M134|MURC_ECO8A RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711868|sp|B1LG28|MURC_ECOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766001|sp|B7UIE1|MURC_ECO27 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766002|sp|B7LFW1|MURC_ECO55 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766003|sp|B7MNV0|MURC_ECO81 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12512797|gb|AAG54395.1|AE005186_1 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Escherichia coli O157:H7 str. EDL933]
 gi|26106421|gb|AAN78607.1|AE016755_107 UDP-N-acetylmuramate--alanine ligase [Escherichia coli CFT073]
 gi|13359551|dbj|BAB33518.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli O157:H7 str.
           Sakai]
 gi|91070729|gb|ABE05610.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli UTI89]
 gi|157065242|gb|ABV04497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli HS]
 gi|157076892|gb|ABV16600.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E24377A]
 gi|170521412|gb|ACB19590.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli SMS-3-5]
 gi|187767764|gb|EDU31608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014538|gb|EDU52660.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000410|gb|EDU69396.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357039|gb|EDU75458.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359896|gb|EDU78315.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365892|gb|EDU84308.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370793|gb|EDU89209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376362|gb|EDU94778.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|192926463|gb|EDV81096.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|192955858|gb|EDV86328.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194412573|gb|EDX28870.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194417338|gb|EDX33445.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194421678|gb|EDX37688.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|208726264|gb|EDZ75865.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733601|gb|EDZ82288.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740098|gb|EDZ87780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162017|gb|ACI39450.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746534|gb|ACI71574.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746536|gb|ACI71575.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746538|gb|ACI71576.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746540|gb|ACI71577.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746542|gb|ACI71578.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|215263329|emb|CAS07644.1| UDP-N-acetylmuramate: L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217321410|gb|EEC29834.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350292|emb|CAU95975.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli 55989]
 gi|218359442|emb|CAQ96980.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI1]
 gi|218363800|emb|CAR01460.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli S88]
 gi|218425532|emb|CAR06315.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli ED1a]
 gi|222031922|emb|CAP74660.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli LF82]
 gi|226902152|gb|EEH88411.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|242375927|emb|CAQ30608.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli BL21(DE3)]
 gi|253325923|gb|ACT30525.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972114|gb|ACT37785.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|253976323|gb|ACT41993.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli BL21(DE3)]
 gi|254590628|gb|ACT69989.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757474|dbj|BAI28971.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257762600|dbj|BAI34095.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281177311|dbj|BAI53641.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE15]
 gi|284919871|emb|CBG32926.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli 042]
 gi|290760789|gb|ADD54750.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|291321204|gb|EFE60646.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|291430685|gb|EFF03683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|294492769|gb|ADE91525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli IHE3034]
 gi|300299669|gb|EFJ56054.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|300409030|gb|EFJ92568.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|300456555|gb|EFK20048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300460442|gb|EFK23935.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300525504|gb|EFK46573.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300531336|gb|EFK52398.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|305850973|gb|EFM51428.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|307629665|gb|ADN73969.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UM146]
 gi|312289462|gb|EFR17356.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|312944697|gb|ADR25524.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315285163|gb|EFU44608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 110-3]
 gi|315294714|gb|EFU54057.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 153-1]
 gi|315300008|gb|EFU59246.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 16-3]
 gi|320179653|gb|EFW54602.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii ATCC 9905]
 gi|320190386|gb|EFW65036.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197458|gb|EFW72072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli WV_060327]
 gi|320642130|gb|EFX11481.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. G5101]
 gi|320647493|gb|EFX16288.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. 493-89]
 gi|320652827|gb|EFX21065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. H 2687]
 gi|320658216|gb|EFX25945.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663525|gb|EFX30809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668837|gb|EFX35632.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323160111|gb|EFZ46072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E128010]
 gi|323171254|gb|EFZ56902.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli LT-68]
 gi|323176399|gb|EFZ61991.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1180]
 gi|323935143|gb|EGB31510.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1520]
 gi|323945720|gb|EGB41768.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H120]
 gi|323950913|gb|EGB46790.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H252]
 gi|323955289|gb|EGB51062.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H263]
 gi|323960037|gb|EGB55683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H489]
 gi|323964813|gb|EGB60280.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli M863]
 gi|323970763|gb|EGB66017.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TA007]
 gi|323975745|gb|EGB70841.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TW10509]
 gi|324008326|gb|EGB77545.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 57-2]
 gi|324118441|gb|EGC12335.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1167]
 gi|326345189|gb|EGD68932.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1125]
 gi|326346957|gb|EGD70691.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1044]
 gi|327255069|gb|EGE66672.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli STEC_7v]
 gi|331052179|gb|EGI24218.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331066539|gb|EGI38416.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331072128|gb|EGI43464.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332095382|gb|EGJ00405.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 5216-82]
 gi|332097809|gb|EGJ02782.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 155-74]
 gi|332103573|gb|EGJ06919.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|332341423|gb|AEE54757.1| UDP-N-acetylmuramate--alanine ligase MurC [Escherichia coli UMNK88]
          Length = 491

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|190572802|ref|YP_001970647.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia K279a]
 gi|229620424|sp|B2FNN8|MURC_STRMK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190010724|emb|CAQ44333.1| putative UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas
           maltophilia K279a]
          Length = 478

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 138/400 (34%), Gaps = 49/400 (12%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLTAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +++IT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMSIIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L A++     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCIDDPEVAALAARTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S  AD +     Q   +    ++L QG S EVV    G H   N L    +   L  
Sbjct: 246 YGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEVVLALPGRHNVLNALAAAAVGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             D   +AL  F     R           G    I + Y  +P+ ++A   V +      
Sbjct: 306 APDAIARALEGFAGVGRRFNDLGEVTTASGAKVRIIDDYGHHPSELEA---VFAAARGGW 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSI 422
             +R+ V             F    A VLS  +    S V+ +G   +A  D  AL R+I
Sbjct: 363 ADKRLVVAFQPHRYSRTRDQF-DKFAAVLSSVDALVLSEVYPAGEEPIAGADSHALARAI 421

Query: 423 HVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                           L   +   L DGD++++  +   G
Sbjct: 422 RARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAGDIG 461


>gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 471

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 157/455 (34%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      AS G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++A+TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++      G   +N DD       A        ++   
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIVNADDEVGRRWLASLPDAVAVSMEGH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +    +     + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+   V G   +  +  +     +AE  +      V ++  +         + D L   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----DIVVVTDDNPRTEEPRAIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       M+G    + + +    D DVV++  K 
Sbjct: 409 LDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKG 443


>gi|297539591|ref|YP_003675360.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
 gi|297258938|gb|ADI30783.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
          Length = 472

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 145/400 (36%), Gaps = 41/400 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  +  IPV     +L  L +             IA+ G+ GKTTT  ++   L+ 
Sbjct: 79  PEVKAARAKKIPVVPRALMLAELMRFRQG---------IAVAGTHGKTTTTSLIASILAE 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      +    +   L     +   G  E  ++   E       + P +AV+T I
Sbjct: 130 AG--------MDPTFVIGGKLEAANANAKLGTGEYIVAEADESDASFLHLTPVMAVVTNI 181

Query: 193 APAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    +++ SA  E  + L   G   +  DD+    +  +      K + ++G
Sbjct: 182 DQDHMDTYEHSFDKLKSAFVEFLQQLPFWGMAVVCIDDANIREILPRV----TKPVMTYG 237

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            S++A  +    +    +     Q         +V  +  G H   N L  + I S L  
Sbjct: 238 FSEDARVRAINVRADDGKMHFTAQRINGVVTEFDVTLNLPGNHYVLNALAAIAIASELNV 297

Query: 309 DVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                IKAL  F     R +RY   A+  G    + + Y  +P  M+A I+      P+ 
Sbjct: 298 PDAAIIKALKEFKGVGRRFERYGEIAVKGGGAFTLIDDYGHHPVEMQAVIAAARAAFPN- 356

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSI 422
              R  V+         ++    D   VLS  +    + V+ +G   +   D  +L RSI
Sbjct: 357 ---RRLVMAFQPHRYTRTRDCFEDFVRVLSSTDAVLLTEVYSAGEASIVAADTRSLIRSI 413

Query: 423 HVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +       + ET D L   I +     DVV+V  + S G
Sbjct: 414 RIGGKVEPLFVETTDELPEAILNMAQADDVVIVMGAGSIG 453


>gi|254292770|ref|YP_003058793.1| UDP-N-acetylmuramate--L-alanine ligase [Hirschia baltica ATCC
           49814]
 gi|254041301|gb|ACT58096.1| UDP-N-acetylmuramate/alanine ligase [Hirschia baltica ATCC 49814]
          Length = 474

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 154/431 (35%), Gaps = 44/431 (10%)

Query: 47  KGPH-YDGHDFILHAVQKGAG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           KG   + GH+   +    GA      +      V +  +  IPV    ++L  L ++   
Sbjct: 53  KGARIFIGHE-AENVANAGAVIISSAIKAGNPEVDAARAAGIPVVRRANMLAELVRM--- 108

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    + + G+ GKTTT  M++  L +       I   N  I             D
Sbjct: 109 ------KWTVCVAGTHGKTTTTTMVSSLLDAADIDPTVI---NGGIVNAYGSNAKAGAGD 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S           + P  A++T I P H+ ++  +E + +A     E +   G
Sbjct: 160 WMVLEADESD-----GTFTKLSPTAAIVTNIDPEHMEHYGSMENLRAAFDTFVENIPFYG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGK 279
              L  D    + L ++   +  +   ++G ++ AD +    +   + +  ++ L   G 
Sbjct: 215 FAVLCTDHPEVQALASR---IVDRRRITYGFNRQADVRAVNLRTDLKGAHFDIALRRPGS 271

Query: 280 SMEVV-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR---YR 331
           +   +         G H  QN L  + +   L A  D  +  LS F   + R      + 
Sbjct: 272 ATPRMIKGATLPMAGDHNVQNALAAVTVALELGASDDQILAGLSGFGGVKRRFTPAGEWE 331

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388
               +    +ID+ Y  +P  ++A +     +   G    +A       + +L   F   
Sbjct: 332 IEAGKEPVRIIDD-YGHHPVEIEAVLKAARSMQGQGGVIAVAQPHRYSRLNDLFSEFSTC 390

Query: 389 --HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG 444
               D+  +  +Y      + G +   L  ++ +  H  V   E+++ L   I++    G
Sbjct: 391 FDMADIVLIPPVYEAGETPIEGINHETLVKSIRQHGHKDVGILESLEALPEAIKAYAKPG 450

Query: 445 DVVVVKSSNSC 455
           D+VV   +   
Sbjct: 451 DMVVCLGAGDI 461


>gi|78046387|ref|YP_362562.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|109892756|sp|Q3BXF1|MURC_XANC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78034817|emb|CAJ22462.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 477

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 140/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             DT  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 APDTIARALENF---AGIGRRFNDLGEVTTSSGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
 gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
          Length = 462

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 159/402 (39%), Gaps = 39/402 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    + + +  +  I V    ++L  L +L            IAI+GS GKTTT  +
Sbjct: 74  SAISPANEEIVAAKAKKITVISRGEMLAELMRLRYG---------IAISGSHGKTTTTSL 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  +        CI   N H  +        +  ++ + E   S    +R     + P 
Sbjct: 125 ISQIMMHAGLNPVCIIGGN-HFNLKSNAVCNDLSSEYMVCEADESDGSFLR-----LSPV 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   HL  +  +E +  A  E    +   G  FL +++     L   ++    K
Sbjct: 179 INVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCFENDVVRDLSKSAN----K 234

Query: 246 TIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
             YS+G  K+ DF + K   +  +  ++       + + E     IG H   N L ++G+
Sbjct: 235 KYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLGEFSVPLIGEHNILNSLASIGV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  DV    + L  F   EG G+R    L     TL D+ Y  +P  +KA    LS 
Sbjct: 295 AYHLGIDVPNIKEGLKTF---EGVGRRLN-KLYDKEITLFDD-YAHHPTEIKA---TLSS 346

Query: 363 ISPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLAL 414
           +    + RRI  +            + +   +F+  D   +  +Y      ++G +   +
Sbjct: 347 VRNAYKSRRIIAVFQPHRYSRTELLLNDFEYAFNDADEVIITDIYAAGEAPIAGVNGEII 406

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            D + + + +V Y + +D +   ++S   DGD+++   + + 
Sbjct: 407 CDIVKKQNKNVRYIKNIDEVLPVLESIKKDGDIIITLGAGNI 448


>gi|325925686|ref|ZP_08187064.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325543902|gb|EGD15307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 477

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 140/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             DT  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 APDTIARALENF---AGIGRRFNDLGEVTTSSGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|300715309|ref|YP_003740112.1| UDP-N-acetylmuramate-alanine ligase [Erwinia billingiae Eb661]
 gi|299061145|emb|CAX58252.1| UDP-N-acetylmuramate-alanine ligase [Erwinia billingiae Eb661]
          Length = 491

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 133/413 (32%), Gaps = 45/413 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  M++   + 
Sbjct: 93  PEVVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +              + I E   S    +      ++P +A++T I
Sbjct: 144 GGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+       E +          L   G   L  DD+    L  +      + I ++G
Sbjct: 196 EADHMDTYHGDFENLKQTFVNFLHNLPFYGRAVLCIDDAVIRELIPRIS----RHITTYG 251

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q   Q    +    K +  V  +  G H A N    + + +    + 
Sbjct: 252 FSEDADVRVENYQQNGAQGHFTLVRHDKPLMHVTLNAPGRHNALNAAAAVAVATEEGIED 311

Query: 311 DTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              + AL  F     R         + A       ++ + Y  +P  +   I       P
Sbjct: 312 AEILSALESFQGTGRRFDFLGEYPVQAANGTAGTAMLVDDYGHHPTEVDVTIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKD 416
                +  V+         ++  + D A VLS          Y      + G    +L  
Sbjct: 372 D----KQLVMVFQPHRYSRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSLCR 427

Query: 417 ALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +     V        D +   +   L   D+++++ + + G  R+   L E+
Sbjct: 428 TIRGRGKVDPILVSDHDAVLDMLAPKLSGNDLILIQGAGNVG--RIARTLSEQ 478


>gi|218961094|ref|YP_001740869.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729751|emb|CAO80663.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 464

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 141/405 (34%), Gaps = 46/405 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           S   + IPV    ++L  + +++           I I G+ GKTT+  M    L S    
Sbjct: 83  SAYEMKIPVIRRAELLAEITRMSF---------SIGIAGTHGKTTSTSMAGSVLESAG-- 131

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                     I V   +     +   G  +  +    E       + P IA IT +   H
Sbjct: 132 ------LEPTIIVGGKVKNFGSNNVMGSGKYIVVEADEYDHSFLTLTPCIAGITNVDADH 185

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L  +  ++EI S+  E    +   G++    DD   + +    H    K I ++G S+ A
Sbjct: 186 LDCYRNLDEIKSSFIEYANKVPFFGSVIACLDDPGVQAILPFIH----KKIVTYGFSRQA 241

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D Q R        S  ++  +   +  +     G H  QN L+   I   L         
Sbjct: 242 DVQARDIDMQGFNSSYDLLFKDYKLGRISLKVTGKHNIQNSLLAASIGLELDIPFPAIQD 301

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  F    G  +R+      G  T+ D+ Y  +P  + A +      +     RRI  L
Sbjct: 302 GLGKFS---GVYRRFDLKGEAGGITVYDD-YAHHPTEIIATLEGFKDSAK----RRIVAL 353

Query: 376 GDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIH--V 424
                +   ++ F+ +  +         +  +Y      + G     + DA  +S H  V
Sbjct: 354 FQ-PHLYSRTRDFYEEFGKSFFSCDCLILAPIYPAREQPIPGISSKLIADAAIQSGHHNV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC---GFYRLINLLLE 466
           H   +   +     + L +GD+++   + +    G   ++  L  
Sbjct: 413 HLINSNSEIVSQTLALLKEGDILITMGAGNIWQYG-EEILRQLKN 456


>gi|94676482|ref|YP_588948.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|166222957|sp|Q1LSW6|MURC_BAUCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94219632|gb|ABF13791.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 490

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 147/411 (35%), Gaps = 45/411 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + +    + +   L IP+    ++L  L +             IAI G+ GKTTT  M
Sbjct: 86  SAISIANPEIVAAKKLRIPIITRAEMLAELMRFRYG---------IAIAGTHGKTTTTAM 136

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L    L +        G     IG    L        +G + +  +   ++ FL   ++P
Sbjct: 137 LASIYLEAGLDPTIVNGGLIKSIGQYARL-------GYGSYLIAEADESDLSFL--HLQP 187

Query: 185 HIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            + +IT I   H+         + +   +    L   G   +  DD     L        
Sbjct: 188 IVTIITNIEADHMENYQGDFNYLKNTFLKFIHKLPFYGKGIMCLDDPVIRDLLPHIS--- 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
            + I ++G +  A+F+L  + Q       ++  Q K ++ +  +  G H A N +  + +
Sbjct: 245 -RHIITYGFNSKANFRLTNYHQKEAHVSFQLYRQDKPTLRIELNSPGRHNALNAVAAIAV 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNANPASMKAAI 357
            +         ++AL  F     R  +      +    +    ++ E Y  +P  ++A I
Sbjct: 304 ATEEGIADKNILQALFRFKGINRRFDKLGCFSLKKINGKNGVVMLVEDYGHHPTELQATI 363

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI---------DLAEVLSLYNISHVWLSG 408
             +    P  + R + V          ++  +          D+  +L +Y      ++G
Sbjct: 364 QSVRIGWP--DKRLVMVF--QPHRYTRTRDLYEYFVGVLSKVDVLLMLDIYPAGENPIAG 419

Query: 409 FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               +L   +  +  +   +   ++ L + +   L D D+V+++ + S G 
Sbjct: 420 IDSKSLCCTIRNTSKLDPIFIHELNKLPVMLAQLLQDNDLVLMQGAGSIGL 470


>gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter
           cryohalolentis K5]
 gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter cryohalolentis K5]
          Length = 570

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/508 (16%), Positives = 160/508 (31%), Gaps = 86/508 (16%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD---GHDFILHAVQKGAGLVVV 70
           I    +  V         +DSR +A  + F  +K    +     D +  A    A  ++ 
Sbjct: 49  ITAVQLDAVINIPFQQFCLDSRQLASNDVFVLLKSHTPNCQKSRDHLYQAANN-AAFILS 107

Query: 71  NTDM-------------------------VASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
             D                             + +L  PV  V ++   L  L  A    
Sbjct: 108 EIDPRALLNTTSVSNHADITLPNDSTAKAQQQLVALPCPVLHVPNIRDFLGTLIQARLQY 167

Query: 106 SK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            +     T+IA+TG+ GKTT  +++         + A +G+  N     L  A       
Sbjct: 168 QQPVTLPTVIAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRFGALVQASHTTGDV 227

Query: 162 FGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             +                 E     L + R     +   +A+ T ++  HL   + + E
Sbjct: 228 LAVQQFLYQMGKEGAELLALEASSHGLDQQRL--QGMPVSVAIYTNLSRDHLDYHADMAE 285

Query: 206 IASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLR 261
            A+AKA++F+           +N DD   +++   +HA  + T++++     K A F   
Sbjct: 286 YAAAKAKLFDKAHFPDLTHAIINIDDEHAQIMLDTAHASNL-TVWTYSLDSLKTATFVAA 344

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVH-----HGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                     + ++       + H       +G     N+L  +     L   ++     
Sbjct: 345 NITPSLRGVEISLRTDFDDGTMNHLDIVSPLLGRFNVANLLAAMAAAVALGISLEHIAAV 404

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +       GR +R     N G F +    Y   P ++     VL+ +  H +G+  AV G
Sbjct: 405 VPQLQGAVGRMQR--VPSNDGCFIV---DYAHTPDALS---QVLASLKTHCKGQLWAVFG 456

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD-----ALPRSIHVH 425
              +     +           L     V L+  +         L+D     +  +    H
Sbjct: 457 CGGDRDAGKRPLMAQAG----LAGADKVVLTADNPRTEDPNAILQDMQVGMSTEQYQRTH 512

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  +     D+VV+  K 
Sbjct: 513 IEPARQAAIEYAVNQAAADDIVVIAGKG 540


>gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
          Length = 465

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 156/384 (40%), Gaps = 51/384 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARL 104
           + GH     A  +GA +VV+++ +  S   +       IPV    ++L  L +       
Sbjct: 54  FSGH---EAANVRGADVVVISSAVPESNPEVQAAREQRIPVIRRAEMLAELMRFRQG--- 107

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                 IA+ G+ GKTTT  ++   L++  +  T+         +    T AR+  D ++
Sbjct: 108 ------IAVAGTHGKTTTTSLVASILAAADLDPTFV----IGGLLKSAGTNARL-GDGEY 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
            + E   S    +      + P +AV+T I   H+  +   +EE+  A  +  + L   G
Sbjct: 157 LVAEADESDASFL-----YLAPVMAVVTNIDADHMDTYGGSLEELRRAFLQFLQRLPFYG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGK 279
              L  DD     L  +  +     +  +G S +AD Q R W Q   +S  EV  ++ G+
Sbjct: 212 LAVLCTDDPLVRGLIPELRS----PVLGYGFSASADLQARHWHQVGGRSRFEVWRRVDGE 267

Query: 280 SMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           ++  +       G H   N L  +GI S +    +T   AL+ F    G G+R+    + 
Sbjct: 268 AVHWLDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADF---RGVGRRFEILGDF 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T++D+ Y  +P  ++A ++    + P        VL         ++    D  EVL
Sbjct: 325 AGITIVDD-YGHHPRELEATLAAARDMWPDRP----IVLAFQPHRFSRTRDLFADFVEVL 379

Query: 397 SLYN---ISHVWLSGFHVLALKDA 417
              +   +  ++ +G   +A  D+
Sbjct: 380 GKADRSVLLDIYGAGEAAIAGVDS 403


>gi|218698514|ref|YP_002406143.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI39]
 gi|218703351|ref|YP_002410870.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UMN026]
 gi|293403163|ref|ZP_06647260.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|293408182|ref|ZP_06652022.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298378693|ref|ZP_06988577.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300900878|ref|ZP_07119015.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|301026101|ref|ZP_07189576.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331661465|ref|ZP_08362389.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331671610|ref|ZP_08372408.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
 gi|226711865|sp|B7NHJ7|MURC_ECO7I RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711867|sp|B7N7W4|MURC_ECOLU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218368500|emb|CAR16235.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI39]
 gi|218430448|emb|CAR11314.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli UMN026]
 gi|291430078|gb|EFF03092.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|291472433|gb|EFF14915.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298281027|gb|EFI22528.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300355642|gb|EFJ71512.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|300395672|gb|EFJ79210.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331061380|gb|EGI33343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331071455|gb|EGI42812.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
          Length = 491

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88]
 gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88]
          Length = 456

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 148/403 (36%), Gaps = 44/403 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +    + +I +    + LG L               IA++G+ GKTTT  M
Sbjct: 76  AAVSEDNPELTKALTNNIKIMNRAEFLGYLMDGHKYN--------IAVSGTHGKTTTTSM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++              + +  I V   L  +  +V  G  E  ++   E +       P+
Sbjct: 128 MSHIT--------VNANLDPTILVGGELNIINGNVRTGKSEYFLTEACEYKESFLKFFPY 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  I  I +A ++    + K G +    +D     +          
Sbjct: 180 IGVILNIDADHLDYYKDINHIKNAFSKFANLIPKDGYLIACAEDENINDIIKNIDC---- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGI 302
           TI ++G +K  D Q +     ++  +  +V ++  S    V  +  G +   N L ++ +
Sbjct: 236 TIITYGLNKG-DIQAKNITFDNKGCASFDV-IKNSSVLFSVKLNVPGSYNVLNALASICV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV--- 359
              L  D ++ IK L  FH   G  +R+     +   T+I++ Y  +P  +KA +S    
Sbjct: 294 SFALNIDKESIIKGLESFH---GTHRRFELKGVRNDVTVIED-YAHHPTEIKATLSAAKN 349

Query: 360 ------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                 L    PH   R  ++  D  E    + +       +  +Y              
Sbjct: 350 YPSNRILCVFQPHTYTRTYSLFEDFTESFYNTDTL-----ILADIYPAREKDTGIVSSDM 404

Query: 414 LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L + L  ++I+     + + +  +++     GD+V++  +   
Sbjct: 405 LGNKLRKKNINCINLHSFEDISDYLKKETKPGDLVLIMGAGDI 447


>gi|91977859|ref|YP_570518.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
 gi|123762580|sp|Q133X2|MURC_RHOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91684315|gb|ABE40617.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
          Length = 467

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 146/415 (35%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA ++VV+T +      L       IPV    ++L  L +L            IAI G+
Sbjct: 65  AGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------IAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    D+ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGDVDPTVIN--GGIINAYGTNARLGAG-DWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +AV+T + P HL +F   + +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAVVTNVDPEHLDHFKTFDAVQDAFRIFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIG 289
            K      + I ++G++  AD +L   K     S  +V  + +         +++    G
Sbjct: 228 GKIE---DRRIITYGENPQADARLLDLKPSGAGSTFKVAFRDRKAGTAHEITDLMLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N +  + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  +
Sbjct: 285 PHNALNAVAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    Q       + IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARQ---STSAKVIAVVQPHRFTRLQSLFEEFCTCFNDADTVIVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              ++G         L    H           L   +      GD VV   + + 
Sbjct: 398 EAPIAGIDRDHFVLGLRAHGHREVIPLQDSASLAGVVAGVARSGDYVVCLGAGNI 452


>gi|191167770|ref|ZP_03029577.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209917284|ref|YP_002291368.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SE11]
 gi|307311458|ref|ZP_07591100.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|309796081|ref|ZP_07690493.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|226706322|sp|B6HZ68|MURC_ECOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190902196|gb|EDV61938.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209910543|dbj|BAG75617.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE11]
 gi|306908437|gb|EFN38935.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|308120323|gb|EFO57585.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|315059314|gb|ADT73641.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli W]
 gi|320200390|gb|EFW74976.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EC4100B]
 gi|323181788|gb|EFZ67201.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1357]
 gi|323380128|gb|ADX52396.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli KO11]
 gi|324017748|gb|EGB86967.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 117-3]
          Length = 491

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G +++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFNED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|238893071|ref|YP_002917805.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044865|ref|ZP_06017908.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545387|dbj|BAH61738.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259037834|gb|EEW39062.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K++ +V  +  G H A N    + + +    D    +
Sbjct: 256 ADVRVEDYRQVGAQGHFRLVRQDKAILQVTLNAPGRHNALNAAAAVAVATEEGIDDRAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
             + V          ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 -LVMVF--QPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V              + S L   D+V+V+ + + G  ++   L E
Sbjct: 432 RGKVDPILVPDSAQAAEMLASVLTGNDLVLVQGAGNIG--KIARHLAE 477


>gi|74310710|ref|YP_309129.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sonnei Ss046]
 gi|109892739|sp|Q3Z5R8|MURC_SHISS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|73854187|gb|AAZ86894.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella sonnei Ss046]
 gi|323165974|gb|EFZ51754.1| UDP-N-acetylmuramate--alanine ligase [Shigella sonnei 53G]
          Length = 491

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L+  D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLIGNDLILVQGAGNIG--KIARSLAE 477


>gi|110640304|ref|YP_668032.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 536]
 gi|191174588|ref|ZP_03036082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300984513|ref|ZP_07177005.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|123148432|sp|Q0TLP8|MURC_ECOL5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110341896|gb|ABG68133.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli 536]
 gi|190905135|gb|EDV64780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300306682|gb|EFJ61202.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|324012254|gb|EGB81473.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 60-1]
          Length = 491

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMHVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 536

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 160/532 (30%), Gaps = 77/532 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L +   G   G      V   +I S+ +     F A+ G    G  F   + + 
Sbjct: 1   MTSLKQLAEICGGTLTGPWEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATFAADS-KA 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
            A L       +       +P   VD+V   +      V      +   I ITG+ GKTT
Sbjct: 60  AAVLTDAAGQRIIDDAPTPLPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVD-VDFGIF 165
           T  ++  AL         IG+    I                    LARM  + V   + 
Sbjct: 120 TSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHLVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GT 222
           E+    L   R   H V   +   T ++  HL     +E+   AKA +FE  E     GT
Sbjct: 180 EVSSHALQLGR--VHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGT 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCS------EQSWMEVQ 275
             +  +D + E ++A +        +Y  G +  A+     W   S       +  + + 
Sbjct: 238 AVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRLS 297

Query: 276 LQG----KSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRY 330
           + G    + ++      G     N L+ L  +  +    + +   A+      +  G+  
Sbjct: 298 IAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRMQ 357

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                Q F  ++D  Y   P +++A +  L    P    R   VLG     G        
Sbjct: 358 LVEEGQDFLAMVD--YAHKPGAVQAVLGSLHDYLPDPAARIGIVLGA---GGNRDHDKRA 412

Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-------------VHYSE 428
            +  + +      V+++  +           A+       +                   
Sbjct: 413 IMGRIAAEL-ADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVP 471

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS-------SNSCG----FYRLINLLLEE 467
                     +    GD VVV  K        +           L   L   
Sbjct: 472 DRAEAIAAAVTWARPGDAVVVAGKGHEKGQLVAGKMHPFDDVEELATALKNR 523


>gi|149914528|ref|ZP_01903058.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811321|gb|EDM71156.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 477

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 138/405 (34%), Gaps = 49/405 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       +PV    ++L  L +L            +A+ G+ GKTTT  M
Sbjct: 89  SAIKPGNPELDEARKRGLPVVRRAEMLAELMRLKSN---------VAVAGTHGKTTTTTM 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G ++  +     +     +   G  E  +    E     + +   
Sbjct: 140 VAALLDR--------GKFDPTVVNGGIIHAYGSNARVGQGEWMVVEADESDGTFNRLPAT 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++   E +     E    +   G      DD   + L AK   L  +
Sbjct: 192 IAIVTNIDPEHMDHWGTEENLHRGFYEFVSNIPFYGLAVCCTDDPDVQALVAK---LTDR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +    +     +  +V LQ +            G H   N L  + +
Sbjct: 249 RVVTYGFNTQADIRAVNLRYEKGVAHFDVALQAEGTMIEGCTLPMPGDHNVSNALSAVAV 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L        +AL+ F       +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 309 ARHLGMKRSEIREALAAFGGVN---RRFTKVGEVNGVTIIDD-YGHHPTEIAAVLKAARQ 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV------LSLYNISHVWLSGFHVL--AL 414
                +GR IAV     +    S+  H   AE         +  I+ V+ +G   +  A 
Sbjct: 365 A---CDGRVIAV----HQPHRYSR-LHHHFAEFCTCFNEADVVAIAEVFAAGEDPIDGAT 416

Query: 415 KDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +D L          H      +D L   ++     GD+VV   + 
Sbjct: 417 RDDLVAGLIRAGHRHARAFNDLDDLVRLVREQARPGDMVVCLGAG 461


>gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 159/475 (33%), Gaps = 48/475 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P      +  D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+   + + A+            D L                  I +TG+ GKT+  
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPALDQLAGDIASGWYGDPSDSMLAIGVTGTNGKTSCT 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FEL 167
           + +  AL+++ +  A IG+  + +   L               +LA++       +  E+
Sbjct: 126 QWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEV 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R   +     IAV T +   HL      +   +AKA++F          +N 
Sbjct: 186 SSHALHQGR--VNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAIVNR 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           DD+    L  K         Y  G ++  D             +  +   ++      +V
Sbjct: 243 DDAAGCRLLEKLAGRVRTIAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADV 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  LG +       D A+  ++      GR +R      Q    L+ 
Sbjct: 303 EVGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRL-GGRLQNDEPLVV 361

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++  +  L  I+    GR + + G   +     +     +AE L+      
Sbjct: 362 IDYAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DE 417

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           V ++  +  +         +   +    H    E     +   ++ +  +  VV+
Sbjct: 418 VVVTSDNPRSEDPQRIIDQVIAGMTVPDHARRIEDRASAILQAVRGAAREDVVVL 472


>gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 471

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 158/455 (34%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      AS G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++A+TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++      G   +N DD       A        ++   
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIVNADDEVGRRWLASLPDAVAVSMEGH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +    +     + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+   V G   +  +  +     +AE  +      V ++  +         + D L   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----DIVVVTDDNPRTEEPRAIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       M+G    + +++    D DVV++  K 
Sbjct: 409 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 443


>gi|289549278|ref|YP_003474266.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
 gi|289182895|gb|ADC90139.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
          Length = 448

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 140/382 (36%), Gaps = 40/382 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP     ++L  L ++            +A+ GS GKTTT  M+   L            
Sbjct: 90  IPTIPRGEMLAELFRIKEG---------VAVCGSHGKTTTTSMIAYILHEAG-------- 132

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            +  + +   L R   +   G  +  +S   E       + P +AVIT I   HL  +  
Sbjct: 133 LDPTVLIGGILQRFNGNARLGKGDFIVSEADESDGSFLKLTPTVAVITNIDREHLDFYKD 192

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + I  A  E    +   G   LN DD     +         K  Y++G    A    + 
Sbjct: 193 YDSIRKAFLEFANSVPFYGFSVLNADDEGCSQIIPYVS----KKHYTYGIQTEAHLMAKN 248

Query: 263 WKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +        +V   GK++  +H    G H  QN L ++ +   +    D   +AL  F 
Sbjct: 249 LRLLEGTYSFDVVWMGKNLGNIHLKVPGKHNVQNALASILVALQMDVSFDVIKEALESFR 308

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             E   +R         F + D+ Y  +P  +++ I  + ++ P     +I ++      
Sbjct: 309 NAE---RRLELKGFYKGFPVYDD-YGHHPTEIRSVIKAVREMYPDT---KILLVFQPH-- 359

Query: 382 GELSQSFH--IDLAEVLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLF 434
              S++++   D A VL   +   ++ ++ +G        A  L       Y+ + + +F
Sbjct: 360 -RYSRTYYLLQDFATVLREADSCIVTDIYPAGEENRWHVSAKQLAEISGCIYAPSKEEVF 418

Query: 435 LFIQSSLVDGDVVVVKSSNSCG 456
             ++  L D  V++   + + G
Sbjct: 419 QAVKR-LADNHVILFMGAGNIG 439


>gi|296101254|ref|YP_003611400.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055713|gb|ADF60451.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 491

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 134/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++ ++KQ   Q    +  Q K +  V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEEYKQIGAQGHFTLARQDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLDAVNGKPGTAMLVDDYGHHPTEVDATIKAARAGWPEKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR 420
             + +          ++  + D A VLS          Y+     + G    +L   +  
Sbjct: 375 -LVMIF--QPHRFTRTRDLYDDFASVLSQVDTLLMLDVYSAGETPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V          +   +   L   D+++++ + + G  ++   L E
Sbjct: 432 RGKVDPILVSDPAQVAEILAPVLTGNDLILIQGAGNIG--KIARTLAE 477


>gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 486

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 40/406 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L + A    L      +A++G+ GKTTT  M+ + L  +      +    
Sbjct: 92  VEARRRGLRVLPRAAALGALLLGREGVAVSGTHGKTTTTSMVAVVLQHVGADPGYV---- 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             IG  L    +  D   G      +   +  FL  ++ P IAV+T +   HL N+SGIE
Sbjct: 148 --IGGKLVTTGLGADAGIGEVIAVEADESDGSFL--MLSPKIAVVTNVEADHLDNYSGIE 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EI +  A   + +E+  T+ +  DD     +   +   G K + ++G++++AD+++ + +
Sbjct: 204 EIHANFASFVDRVER--TLVVGVDDPGARRVAELARERG-KRVLTYGEAEDADYRVTRVR 260

Query: 265 QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                +   ++   G+ ++      G H   N    + +   L  D++ A++ ++ F   
Sbjct: 261 ARGFTTEFTIRTANGEPVDGQLAVPGRHNVLNAAAAVAVADELGHDLEVAVEGIADF--- 317

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------------SPHGEGRR 371
            G  +R+      G   +  +SY  +P  ++A +                    H  GR 
Sbjct: 318 AGAARRFEPKGEAGGVAVY-DSYAHHPTEIEADLRATRAALESLAEEAREDGREHAGGRV 376

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV-----LALKDALPRSIH 423
           +A+      +   ++ F  + A  L L +   ++ V+ +           L  +      
Sbjct: 377 VALF--QPHLYSRTRIFAEEFAAALGLADEVVVTEVYAAREDPEPGVTAELITSRVAHDR 434

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFY-RLINLLLEE 467
           V Y    D   L +      GD+V+   +        R++  L + 
Sbjct: 435 VWYVPGRDDAVLRVAELAGPGDIVLTMGAGDVTELGPRIVEALAQR 480


>gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita
           DSM 44233]
 gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM
           44233]
          Length = 482

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 149/421 (35%), Gaps = 45/421 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLR 105
           GHD      +  G   VVV+T +      +       I V    D L AL          
Sbjct: 67  GHDSANLSLIPGGPTAVVVSTAVRPDNPEVVAARAAGIAVVRRADALAAL---------M 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +    + + G+ GKT+T  MLT+AL       +        IG  LT + +      G  
Sbjct: 118 TDRRSVCVAGTHGKTSTTSMLTVALQHAGLDPS------FAIGGELTGSGLGAHHGQGDV 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +  +   +  FL+    PH A++T I P HL +    E   +   +  E +E  G + +
Sbjct: 172 FVAEADESDGSFLS--FSPHGAIVTNIEPDHLDHHGTAEAYTAVFDQFIERIEPGGFLVI 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEV 283
             DD     L A+     ++ + ++G++ +A  +L         +   V     G ++ +
Sbjct: 230 CADDPGSAALAARVR---LRRLVTYGRAADAVVRLAVDPASDPATGEPVVTLADGTAVPL 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G HM  N +  L     L  D D      +      G  +R+      G  T+ D
Sbjct: 287 RLTVPGDHMLLNAVAALAAGVELGVDADLLA---AGLAGYTGVRRRFELKGVAGGVTVYD 343

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--------- 394
           + Y  +P  + A ++    + P  +GR + V      +   + +F  +            
Sbjct: 344 D-YAHHPTEVAAQLAAARGVVPA-DGRLVVVF--QPHLYSRTATFATEFGAALGTADLVV 399

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           VL +Y        G     +  A+P    V Y         F+   +  GD+V+   +  
Sbjct: 400 VLDIYGAREDPRPGVTGELITAAVPAGPDVRYHPERSTAARFVAEIVRAGDLVITMGAGD 459

Query: 455 C 455
            
Sbjct: 460 V 460


>gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
 gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
          Length = 482

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 141/382 (36%), Gaps = 44/382 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A+   L +    + + G+ GKTTT  M+ +A+       +     N    VP      
Sbjct: 122 RMALLGELLAAGPSVGVIGTHGKTTTTSMIAVAMYGAGLDPSAFVGGN----VPEFGGNA 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-----NFSGIEEIASAKA 211
                  + E+  S  G       L+    AV T     H+       +S +EE  +  A
Sbjct: 178 RTGTGPFVAEVDESDRGF-----ALLGCETAVFTNAEDDHVGGELATYWSTVEEQHAGFA 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                   +G +    D    + L       G +   ++G+S  AD++    +     + 
Sbjct: 233 RFVAQ---SGRVLFCADWPGLDTL-----CSGAREQLTYGQSAGADYRAVNVRPDESGTT 284

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V+ +G+ + E      G H   N L  L +  +   D D A +AL+ FH   G G+R+
Sbjct: 285 FDVEFRGERLGEARVSLPGTHNVLNGLAALAVTHLYGGDFDRAARALADFH---GPGRRW 341

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--- 387
                +G   ++D+ Y  N   + +A+    Q      GRR+ V+          QS   
Sbjct: 342 EIKGERGGALVVDD-YAHNATKVASAVQAARQT-----GRRVRVVFQPHRYLRTQQSWPR 395

Query: 388 -----FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSS 440
                   D   VL +   S   + G H   + D + +  H  VHY      +   ++ S
Sbjct: 396 LADALMDADEVLVLDIAAASETPIEGVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRES 455

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
              GD++V   +     YR+  
Sbjct: 456 AQPGDIIVTMGAGDV--YRIAE 475


>gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 481

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 175/496 (35%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFKK-EYLLSAISQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT+  
Sbjct: 73  WYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTSAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYHILSQRYPT-ALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVKNGRTHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  +   ++ +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLL---MKNSRAVVI 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +  DF   +     + S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EHQEHDFYGSQSSNQIDNSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLENIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         +A+ + +   I   V      +       +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E++P
Sbjct: 459 C---YQIVQGKKEDYP 471


>gi|194364381|ref|YP_002026991.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia R551-3]
 gi|229620423|sp|B4SJX6|MURC_STRM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194347185|gb|ACF50308.1| UDP-N-acetylmuramate/alanine ligase [Stenotrophomonas maltophilia
           R551-3]
          Length = 478

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 138/400 (34%), Gaps = 49/400 (12%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLTAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +++IT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMSIIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L AK+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCIDDPEVAALAAKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S  AD +     Q   +    ++L QG S EVV    G H   N L    +   L  
Sbjct: 246 YGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEVVLALPGKHNVLNALAAAAVGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             D   +AL  F     R           G    I + Y  +P+ ++A   V +      
Sbjct: 306 APDAIARALEGFAGVGRRFNDLGEVTTASGAKVRIIDDYGHHPSELEA---VFAAARGGW 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSI 422
             +R+ V             F    A VLS  +    S V+ +G   +A  D  AL R+I
Sbjct: 363 ADKRLVVAFQPHRYSRTRDQF-DKFAAVLSSVDALVLSEVYPAGEEPIAGADSHALARAI 421

Query: 423 HVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                           L   +   L DGD++++  +   G
Sbjct: 422 RARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAGDIG 461


>gi|238060247|ref|ZP_04604956.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237882058|gb|EEP70886.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 488

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 151/379 (39%), Gaps = 28/379 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A   +    +AI G+ GKTTT  M+T+ L             +
Sbjct: 97  VEARRRGLRVLHRSEALAAAMTGRLTVAIAGTHGKTTTTSMVTMVLQQAGA--------D 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +   ++ +      G  E  +    E      + RP++++IT I   HL+ +  + 
Sbjct: 149 PSFVIGGEISEVGSGAHHGTGEHFVVEADESDRSFLIYRPYLSLITNIEADHLNTYGDLA 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            + +A AE     ++ G I    DD     L     A G + ++++G++ +AD +L +  
Sbjct: 209 TLEAAFAEFARLTDRRGFIVTCADDPGGRRLAQTLRAEG-RRVHTYGEAADADLRLSEIV 267

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             ++      ++ G+S+ E      G HM  N    +    +L   V+ A  AL+ F   
Sbjct: 268 SSAQGVRYLAEIDGRSLGEFRLPVPGRHMGLNSASAVLTAYLLGLPVEAAEAALAAFPGV 327

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R   A       L+ + Y  +P SM  A+  L +++   +GR I V      +  
Sbjct: 328 RRRFERKGVADG----VLVYDEYAYHPTSMTLALQTLREVAG--DGRLIVVF-QPYRLY- 379

Query: 384 LSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGL 433
            ++    ++A          +L ++    V   G    AL +A+P  +    +  + D +
Sbjct: 380 RTRDLQAEIAAALGIADELVLLEVFGPGEVRQPGEGSAALVEAVPLPADRKVFVGSWDDV 439

Query: 434 FLFIQSSLVDGDVVVVKSS 452
            + +      GDVVV   +
Sbjct: 440 PVEVARRARPGDVVVTMGA 458


>gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 477

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 140/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      I +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             +T  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 ASETIARALENF---AGIGRRFNDLGEVTTSTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|163794528|ref|ZP_02188499.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium BAL199]
 gi|159180252|gb|EDP64775.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium BAL199]
          Length = 475

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 91/424 (21%), Positives = 153/424 (36%), Gaps = 50/424 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA      A ++VV+T +      L       +P+    ++LG L +L         
Sbjct: 57  FVGHAASNVDDASILVVSTAIKGDNPELAAARSRMLPIVHRAEMLGELMRL--------- 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  +++  L                I    T AR+    D+ + E 
Sbjct: 108 KWSIAVAGTHGKTTTTSLISTVLDGAG--LDPTIINGGIINAIGTNARLGAG-DWMVVES 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     +   IAV+T I P HL      E +  A     + +   G   +  
Sbjct: 165 DESDGSFVK-----LPATIAVVTNIDPEHLDFHGTFENLQKAFESFVQNIPFYGFAAMCL 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------ 281
           D    + L  K   +  + I ++G S  AD +    +     S     +  ++       
Sbjct: 220 DHPTVQTLIPK---VSDRRIVTYGFSPQADVRGVDVEITPAGSRFTAIITDRAHGTERRL 276

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V+    G H  QN L  + + S +    D  +   +      G  +R+      G  T
Sbjct: 277 ENVLLPMYGQHNVQNALAAMAVASEMGLPDDRVV---ASLQGFGGVKRRFTKTGEAGGIT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLA 393
           +ID+ Y  +P  + A +  L+  S  G GR IAV+       + +L + F       D  
Sbjct: 334 VIDD-YGHHPVEISAVL--LAARSASGAGRVIAVVQPHRYTRLRDLFEDFCTCFNDADAV 390

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKS 451
            V  +Y      ++G    AL + L    H       D   L   +     DGD+VV   
Sbjct: 391 IVADVYPAGEAPIAGIDRDALVEGLRARGHRRVQPLGDPVELAARVLDFAKDGDMVVCLG 450

Query: 452 SNSC 455
           + + 
Sbjct: 451 AGNI 454


>gi|126741300|ref|ZP_01756978.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717618|gb|EBA14342.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 471

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 142/437 (32%), Gaps = 51/437 (11%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSI--------PVFGVDDVLGALNKLAVAARLRSK 107
           F     +  A   VV        G+  +        PV    D+L  L +L         
Sbjct: 60  FTGQKAENLAEAAVVVISSAIKPGNPELDEARLRGLPVVRRADMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   +          G ++  I     +     +   G  E 
Sbjct: 114 ---IAIAGTHGKTTTTTMMAELM--------VAGGFDPTIINGGIIHAYGSNARMGQGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   + +     +    +   G      
Sbjct: 163 MVVEADESDGSFNRLPATIAVVTNIDPEHMEHWGDFDTLRQGFHDFVSNIPFYGIAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           D    + L  +   +  + + ++G +  AD +          +  +V LQ +        
Sbjct: 223 DHPEVQTLVGR---ISDRRVVTYGFNAQADVRASNLTYKGGVAHFDVHLQAEDRVIEGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L  +     +AL+ F       +R+         T+ID+
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMNSSEIREALAAFGGVN---RRFTKVGEVDGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVL 396
            Y  +P  + A +    Q     EGR IAV         LS  F          D+  + 
Sbjct: 337 -YGHHPVEIAAVLKAARQA---CEGRVIAV-HQPHRYSRLSSLFDDFCACFNEADVVAIA 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNS 454
            ++      + G     L   L R  H H    MD   L   ++     GD+VV   + +
Sbjct: 392 EVFAAGEDPIEGASRDDLVAGLVRHGHRHARALMDEGDLERLVREQARPGDMVVCLGAGT 451

Query: 455 CGFYRLINLLLEEFPAI 471
              +   N L E     
Sbjct: 452 ISAW--ANGLPERLAVC 466


>gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis YPIII]
          Length = 495

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 164/464 (35%), Gaps = 45/464 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ 
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAMEVSSHGLIQDRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-S 239
            +     V T ++  HL     +    +AK  +F   +      +N DD       ++  
Sbjct: 196 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDDVGRRWLSQLP 254

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A+ +    +  K  N       K       + +         E+    +G     N+L+
Sbjct: 255 QAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLV 314

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +    +   + A     P  GR + +    N      +   Y   P +++ A  
Sbjct: 315 ALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA-- 368

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+    H  G+   V G   +  +  +     +AE L+      V ++  +  +     
Sbjct: 369 -LAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTDDNPRSEEPQA 423

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   L  +  V                  + DVV++  K 
Sbjct: 424 IVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|126729253|ref|ZP_01745067.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
 gi|126710243|gb|EBA09295.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
          Length = 465

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 49/410 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV    ++L  L +L            IAI G+ 
Sbjct: 70  GADVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRLKSN---------IAIAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L +        G+++  +     +     +   G  E  +    E   
Sbjct: 121 GKTTTTTMVATLLDA--------GNFDPTVVNGGIIHAYGSNARMGQGEWMVVEADESDG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++  IE +     +    +   G      D    + L  
Sbjct: 173 TFNRLPATIAIVTNIDPEHMEHWGSIENLRQGFYDFVSNIPFYGLAVCCTDHPEVQALVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQ 294
           +   +  + + ++G +  AD +    +     +  +V  Q  G+ +E +     G H   
Sbjct: 233 R---VTDRRVVTYGFNAQADVRAMGLRYEKGVAHFDVHFQVSGEVIEGMTLPMPGDHNVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    +    AL+ F       +R+         T+ID+ Y  +P  + 
Sbjct: 290 NALSAIAVARHLGMTGEEIRAALAAFGGVN---RRFTKVGEVNGVTIIDD-YGHHPVEIA 345

Query: 355 AAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVW 405
           A +    Q S   EGR IAV        L    E  E    F+  D+  +  +Y      
Sbjct: 346 AVLKAARQAS---EGRVIAVHQPHRYTRLHHHFE--EFCSCFNEADVVAIAEVYAAGETP 400

Query: 406 LSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
           + G     L   L R  H H       D L   ++     GD+VV   + 
Sbjct: 401 IEGATRDDLVAGLVRHGHRHARALRDEDDLERLVREQAQPGDMVVCLGAG 450


>gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
 gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
          Length = 481

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 175/496 (35%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT+  
Sbjct: 73  WYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTSAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYHILSQRYPT-ALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVKNGRTHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  +   ++ +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLL---MKNSRAVVI 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +  DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQEHDFYGSQSSNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L+ +   H
Sbjct: 347 --YAHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIH 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         + + + +   I   V      +       +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E++P
Sbjct: 459 C---YQIVQGKKEDYP 471


>gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
 gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
          Length = 487

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 142/450 (31%), Gaps = 49/450 (10%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-DDVL 92
           S  + P   F A+ GP  DG  FI  A+ +GA  VV     V   G+ +  V        
Sbjct: 28  SAKVLPGGVFVAVAGPVADGERFIPDALARGAAHVVAGPGTVLPAGATARLVVAENPKAA 87

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---- 148
                 A     R    + AITG+ GKTT   ++    ++  +    +G+          
Sbjct: 88  LGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATAAGRKVGVLGTVAYRWPGVSR 147

Query: 149 -----------VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                      +   LA M     D  + E     + + R     +     + T +   H
Sbjct: 148 NASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDRL--AGLAFAAGIFTNLTQDH 205

Query: 197 LSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           L     +E    AKA +F   L       LN+DD F   L  +           +G +  
Sbjct: 206 LDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRLLEE-----FPQALGYGLTAP 260

Query: 256 AD-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                            E   ++V+    +  V     G H AQN+L  +G   +L    
Sbjct: 261 PAGFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGRHNAQNVLAAMGAALVLGLP- 319

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A    ++       G+  R A  +     +D  Y   P +++   +VL       +G+
Sbjct: 320 --AAAFAALADCHGAPGRLERIANPRDLTVFVD--YAHTPDALE---NVLGAAREFTKGK 372

Query: 371 RIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             AV G   +     +           D+A + S        L+   +   +  L  +  
Sbjct: 373 LFAVFGCGGDRDRTKRPLMAAAVARFADVAVLTSDNPRHEDPLA--IMADARPGLAGARR 430

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          S +   DV+V+  K 
Sbjct: 431 AVAEPDRRRAIGLALSEMGPEDVLVIAGKG 460


>gi|238784568|ref|ZP_04628575.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
 gi|238714534|gb|EEQ06539.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
          Length = 491

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 137/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + D  ++AL+ F     R              +    ++ + Y  +P  + A +  
Sbjct: 306 EEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSVMLVDDYGHHPTEVDATVKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 366 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGETPIPGAD 421

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        + +   +   L   D+++V+ + + G  ++   L E
Sbjct: 422 SRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNSDDLILVQGAGNIG--KIARKLAE 477


>gi|227885004|ref|ZP_04002809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|227837833|gb|EEJ48299.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|307551935|gb|ADN44710.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli ABU 83972]
          Length = 491

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDSAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|21241550|ref|NP_641132.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|23821877|sp|Q8PPA7|MURC_XANAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21106901|gb|AAM35668.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 477

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 139/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q        ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPCMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             DT  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 APDTIARALENF---AGIGRRFNDLGEVTTSTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|125975108|ref|YP_001039018.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|256003237|ref|ZP_05428229.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281418473|ref|ZP_06249492.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|189029009|sp|A3DIP6|MURC_CLOTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125715333|gb|ABN53825.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|255992928|gb|EEU03018.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281407557|gb|EFB37816.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|316939274|gb|ADU73308.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           1313]
          Length = 469

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 145/415 (34%), Gaps = 44/415 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +A   SL IP      +LG + K             +A++G+ GKTTT  M
Sbjct: 79  AAVKSDNPELAKAKSLGIPTLDRATLLGEIMKKY--------PFSVAVSGTHGKTTTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ +           + +  I +   L  +  +   G  +  ++   E         P+
Sbjct: 131 ISLIM--------LKSALDPTIHIGGELDAIGGNTRIGSNKYFVAEACEYVESFLKFHPY 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+  I   HL  F  IE I +A  +    + + G +    DD     +    H     
Sbjct: 183 LAVVLNIEADHLDYFKDIEHIKNAFLKFIRLVPENGYVVACADDQNVLSILKDVHC---- 238

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
            I +FG  SKNA +            +   V    + +  +     G H   N L ++  
Sbjct: 239 NIITFGLNSKNAMWTAEDISFNENGFAAFTVLKDNERITNIQLKVPGIHNISNALASIAA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++   K         G  +R+     +    ++D+ Y  +P+ +KA +     
Sbjct: 299 CYALGCSIENIKKG---LESYTGIHRRFELKGIENNIKVVDD-YAHHPSEIKATLKAARS 354

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R   +L +  +  + +         +  +Y+         H   
Sbjct: 355 GNYPRIWTVFQPHTYTRTKFLLDEFSKAFKDTDK-----VIITDIYSAREKDTGEIHSRI 409

Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L + +  +     Y    +G+  +++ +   GD+++   +     Y++  + L++
Sbjct: 410 LAEKIRENGQDAIYLPDFEGIVEYLKKNASPGDLIITMGAGDV--YKVGEMFLKD 462


>gi|260655412|ref|ZP_05860900.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
 gi|260629860|gb|EEX48054.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
          Length = 461

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 135/404 (33%), Gaps = 39/404 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L               + + G+ GKTTT  M
Sbjct: 64  SAIPSDNPELVTARERGIPVVQRAELLSLLFNSRCG---------VGVAGTHGKTTTTSM 114

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++       +    IG     IG    L    V V         + L E        +P
Sbjct: 115 ISLIAERAGLEPTVAIGGELCDIGCNAKLGNGNVMV---------AELDESDGSFQFFQP 165

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T +   H++ +   + +  A       +   G   L  DD     L  +      
Sbjct: 166 SVAVVTNVDWDHVNYYPSRQSVVDAFVSFLANVPSDGFEVLCGDDPGVRALLGRLEGQNC 225

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
           +   ++G  K  DF     +Q         +   G+ +  V     G H   N L  L  
Sbjct: 226 QNRVTYGLEKGNDFYPTNLEQYPGGGMSYTLNRFGRQVGRVRLTVSGTHNLLNSLAALAA 285

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S L    D  + AL+ FH  +   +R +   N G   L+ + Y  +P  +KA ++ L Q
Sbjct: 286 GSRLGISFDLMVSALNEFHGVK---RRLQQKGNAGDDILVYDDYGHHPNELKATLTALGQ 342

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLA 413
           + P  + R + V          + + +   A+VLS          Y      + G     
Sbjct: 343 MFP--KRRLVVVF--QPHRYTRTAALYEQFAQVLSQADQVILLPIYAADEQQIPGVSSSL 398

Query: 414 LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           ++D +        H           + S L  GD+++   +   
Sbjct: 399 IQDKIHERHPGLCHLVRDKVDAEACVMSVLQPGDLLLTAGAGDV 442


>gi|261414976|ref|YP_003248659.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371432|gb|ACX74177.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325875|gb|ADL25076.1| UDP-N-acetylmuramate--L-alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 460

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 141/414 (34%), Gaps = 43/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +    +  IPV    ++LG L +L            ++I G+ GKTTT  +
Sbjct: 76  SAIPFDNPELVEARARRIPVIRRAEMLGELMRLKY---------TLSIAGTHGKTTTTSI 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +             I                   V  G + +  S   +  FL+ +  P 
Sbjct: 127 VGAIWEEAGLDPTIIVGGIVKGKCSG------AKVGHGDYLIAESDEFDRSFLSMM--PS 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I   HL  +  I+ I  A  +    +   G + +  DD   + + +       K
Sbjct: 179 SAIITNIDADHLDTYENIDAIKDAFTQFANKIPFYGQVIVCLDDPNVQQILSHLK----K 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G ++ A +++            E+    KS+ +      G H   N    + +  
Sbjct: 235 PVITYGFTRQAKYRVENLVFVKGYPQFEIVCDVKSLGQFKLQIPGRHNVLNATAAVALAV 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KA++ F   +   +R+     +    + D+ Y  +P    A    L    
Sbjct: 295 EEGISIEVARKAVAAFEGVK---RRFEFIGEKNGVMVFDD-YAHHPTEATA---TLLGFR 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---------WLSGFHVLALK 415
                +RI V      +   ++  H       S  ++  V          + G     + 
Sbjct: 348 EAFPDKRIIVAFQ-PHLFTRTRDQHEAFGSAFSNCDVLLVTDIYPSREKPIEGVTGAMVA 406

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++     H    +   ++ L    +  L   DV+V+  + +   ++L   +LE+
Sbjct: 407 NSAADRGHRDARFIGDVNNLIPVCKELLKPNDVIVLMGAGNI--WKLGQTILEK 458


>gi|254525136|ref|ZP_05137191.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
 gi|219722727|gb|EED41252.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 138/400 (34%), Gaps = 49/400 (12%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLTAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +++IT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMSIIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L AK+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCIDDPEVAALAAKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S  AD +     Q   +    ++L QG S EVV    G H   N L    +   L  
Sbjct: 246 YGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEVVLALPGKHNVLNALAAAAVGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             D   +AL  F     R           G    I + Y  +P+ ++A   V +      
Sbjct: 306 APDAIARALEGFAGVGRRFNDLGEVTTASGAKVRIIDDYGHHPSELEA---VFAAARGGW 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSI 422
             +R+ V             F    A VLS  +    S V+ +G   +A  D  AL R+I
Sbjct: 363 ADKRLVVAFQPHRYSRTRDQF-DKFAAVLSSVDALVLSEVYPAGEEPIAGADSHALARAI 421

Query: 423 HVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                           L   +   L DGD++++  +   G
Sbjct: 422 RARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAGDIG 461


>gi|139437196|ref|ZP_01771356.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
 gi|133776843|gb|EBA40663.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
          Length = 472

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 150/403 (37%), Gaps = 44/403 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +     L IPV+    +L AL             T +A+ G+ GKTTT  M 
Sbjct: 83  AIPESNPELVRARELGIPVWPRAKMLSALG---------HGYTTVAVAGTHGKTTTSSMC 133

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  +             I             D+ + E   S    +      + P++
Sbjct: 134 ATMLDRMGLD---PSFLIGGIVEGYDTNGKNGSGDYFVAEADESDSSFL-----FLNPNV 185

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T +   HL ++SGIEEI +  A+    + + GT+ +  +D     L   +     + 
Sbjct: 186 VIVTNVEADHLDHYSGIEEIEATFAKFMSLVGEDGTVIVCGEDPHLVELAKST----GRH 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVS 304
           + S+G +++ D           QS   V+ +  +   V      G H   N    L +  
Sbjct: 242 VLSYGFAESNDIVCMHPDVKGIQSDFIVRFEDGTEHAVEIKSNPGRHNMLNATAVLTVAH 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
           +L  D+D+A KALS F   EG  +R+    +    T++D+ Y  +P  +KA ++  S   
Sbjct: 302 VLGFDIDSAAKALSSF---EGVRRRFTHVGDIDGITVVDD-YGHHPTEIKATLAAASSLG 357

Query: 363 -------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R  A+  D  +    +         ++ +++   + + G     L 
Sbjct: 358 YKHVDVVFQPHRYSRLQALCDDFADAFANADKL-----LLIDVFSAGEMPIPGVTSKMLA 412

Query: 416 D---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           D   A      V Y  +   L   ++  + +GD+++   +   
Sbjct: 413 DTVRAKHPGKEVVYCSSRLELNQELEQMVGEGDLLLTMGAGDV 455


>gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
          Length = 490

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 164/464 (35%), Gaps = 45/464 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 11  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 70

Query: 81  L----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ 
Sbjct: 71  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 130

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-S 239
            +     V T ++  HL     +    +AK  +F   +      +N DD       ++  
Sbjct: 191 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDDVGRRWLSQLP 249

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A+ +    +  K  N       K       + +         E+    +G     N+L+
Sbjct: 250 QAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLV 309

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +    +   + A     P  GR + +    N      +   Y   P +++ A  
Sbjct: 310 ALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA-- 363

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+    H  G+   V G   +  +  +     +AE L+      V ++  +  +     
Sbjct: 364 -LAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTDDNPRSEEPQA 418

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   L  +  V                  + DVV++  K 
Sbjct: 419 IVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 462


>gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium abscessus ATCC 19977]
 gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium
           abscessus]
          Length = 515

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 149/481 (30%), Gaps = 51/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +     G      V G+++ ++     + F A+ G    G  F   AV  GA 
Sbjct: 18  VSDLASLVSAELHG-PSATTVGGVTLRAQDARTGDLFAALPGTSTHGAQFASEAVSAGAA 76

Query: 67  LVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
            V+ +      +    L I V         L +LA            ++ +TG+ GKTTT
Sbjct: 77  AVLTDAAGAELVAGQGLDIAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGKTTT 136

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             ++   L +  K    IG+    I      + +                   VD  + E
Sbjct: 137 TYLVEAGLRAAGKRVGLIGTVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTVVME 196

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IF 224
           +    L   R      R  +   T ++  HL     +++  + KA +F            
Sbjct: 197 VSSHALALNR--VDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSV 254

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQ-CSEQSWMEVQLQGKSME 282
           +  DD     +   +   G             AD++                    +  E
Sbjct: 255 VCIDDDAGRAMAELAREAGPDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTE 314

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G++   N L+ + I+ +L     TA   ++        G+    A  Q F  ++
Sbjct: 315 LTIALPGHYNVANCLVAIAILDVLGVSAATAAPGIATAG---VPGRMEAVAAGQPFLAVV 371

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y   P +++A +  L     H +GR   V G     G   +    D+ +V +     
Sbjct: 372 D--YAHKPGALRAVLESLRS---HRDGRLAVVFGA---GGNRDRGKRADMGKVAAEL-AD 422

Query: 403 HVWLSGFHVLALKDALPR----------SIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V ++  +    + A  R             +           F       GD V+V  K
Sbjct: 423 LVVVTDDNPRNEEPAAIRTEIISGTTGSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGK 482

Query: 451 S 451
            
Sbjct: 483 G 483


>gi|256964811|ref|ZP_05568982.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
 gi|256955307|gb|EEU71939.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
          Length = 445

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 68  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 100

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 101 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 152 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 204

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 205 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKADFVG 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 259 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 314 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 367

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 368 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 421

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 422 GAGDVQKFEQAYETLL 437


>gi|219558136|ref|ZP_03537212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
          Length = 268

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 51  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 110

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 111 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 170

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     +   + A     +    +    D            +    +       EV  
Sbjct: 171 ADDPAVAAMAKLTAA----RVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRL 226

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              G H   N L    +     A V+    AL+   P     
Sbjct: 227 GVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHR 268


>gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 495

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 164/464 (35%), Gaps = 45/464 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ 
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-S 239
            +     V T ++  HL     +    +AK  +F   +      +N DD       ++  
Sbjct: 196 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDDVGRRWLSQLP 254

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A+ +    +  K  N       K       + +         E+    +G     N+L+
Sbjct: 255 QAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLV 314

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +    +   + A     P  GR + +    N      +   Y   P +++ A  
Sbjct: 315 ALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA-- 368

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+    H  G+   V G   +  +  +     +AE L+      V ++  +  +     
Sbjct: 369 -LAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTDDNPRSEEPQA 423

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   L  +  V                  + DVV++  K 
Sbjct: 424 IVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|307272893|ref|ZP_07554140.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
 gi|306510507|gb|EFM79530.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
          Length = 456

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 79  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 111

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 112 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 163 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 216 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKADFVG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 270 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 325 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 378

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 379 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 432

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 433 GAGDVQKFEQAYETLL 448


>gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 461

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 143/415 (34%), Gaps = 36/415 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       A        ++     + N      +    +       +         E
Sbjct: 240 NADDEVGRRWLASLPDAVAVSMEGH-INPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L+ L  +  L   +   +K  +   P  G   R       G  T++
Sbjct: 299 IESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVV 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +
Sbjct: 356 VD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFA 406


>gi|255975546|ref|ZP_05426132.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256619390|ref|ZP_05476236.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256762846|ref|ZP_05503426.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256853430|ref|ZP_05558800.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|257079296|ref|ZP_05573657.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|257087121|ref|ZP_05581482.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294779802|ref|ZP_06745189.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|255968418|gb|EET99040.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256598917|gb|EEU18093.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256684097|gb|EEU23792.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256711889|gb|EEU26927.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|256987326|gb|EEU74628.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|256995151|gb|EEU82453.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294453176|gb|EFG21591.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|295113194|emb|CBL31831.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus sp. 7L76]
 gi|323481052|gb|ADX80491.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis 62]
          Length = 445

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 68  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 100

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 101 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 152 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 204

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 205 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKADFVG 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 259 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 314 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 367

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 368 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 421

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 422 GAGDVQKFEQAYETLL 437


>gi|53729118|ref|ZP_00134082.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207507|ref|YP_001052732.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975477|ref|YP_001651070.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250498|ref|ZP_07336695.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244820|ref|ZP_07526919.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249218|ref|ZP_07531215.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251540|ref|ZP_07533447.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253774|ref|ZP_07535628.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256040|ref|ZP_07537828.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258231|ref|ZP_07539974.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260470|ref|ZP_07542165.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166222951|sp|A3MY91|MURC_ACTP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706335|sp|B0BRH8|MURC_ACTPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126096299|gb|ABN73127.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875578|gb|ABY68626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650486|gb|EFL80645.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854265|gb|EFM86471.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858742|gb|EFM90801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861004|gb|EFM93010.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863258|gb|EFM95198.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865462|gb|EFM97357.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867691|gb|EFM99536.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869873|gb|EFN01655.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 152/449 (33%), Gaps = 54/449 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGAL 95
            A  G       FI H  +  AG  VV            V +     IPV     +L  +
Sbjct: 59  LAEAGAKV----FIGHQAENVAGASVVVASSAIDDSNPEVRAAKEARIPVIQRAQMLAEI 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IA+ G+ GKTTT  M+++  +  K         N  +        
Sbjct: 115 MRFR---------HGIAVAGTHGKTTTTAMISMIYTEAKLD---PTFVNGGLVKSAGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++ +   +  
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     +  +      + + ++G S+ AD+++  ++Q   Q    V
Sbjct: 218 RNLPFYGLAVMCADDETVIEIAPQV----GRQVLTYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ ++V+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +   I                 PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSL 441
              +       +L +Y      + G    AL  ++     V        D L   +   +
Sbjct: 394 QVDAL-----IMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQII 448

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            DGD+++ + + S    R+   L E + A
Sbjct: 449 QDGDLILAQGAGSV--SRISRGLAESWKA 475


>gi|134095970|ref|YP_001101045.1| UDP-N-acetylmuramate--L-alanine ligase [Herminiimonas
           arsenicoxydans]
 gi|166224695|sp|A4G8T7|MURC_HERAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133739873|emb|CAL62924.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Herminiimonas arsenicoxydans]
          Length = 469

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 140/408 (34%), Gaps = 44/408 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IP+     +L  L +L            IAI G+ GKTTT  ++
Sbjct: 73  AVQQDNPEVVAAREKHIPIVPRAMMLAELMRLRRG---------IAIAGTHGKTTTTSLV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+         G  +    +   L     +   G  E  ++   E       + P I
Sbjct: 124 ASVLAE--------GGLDPTFVIGGLLNSAGANAKLGAGEFIVAEADESDASFLNLSPVI 175

Query: 187 AVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            VIT I   H+  +    E++  A  E  + L   G   L  DD+    +  +   L   
Sbjct: 176 EVITNIDADHMETYEHDFEKLKQAFVEFTQRLPFYGVAVLCLDDATVREIMPRISKL--- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G  ++A  +    K         V   G   M+V  +  G H  QN    + I  
Sbjct: 233 -ITTYGFHEDAMVRAVDAKAVDGHMQFTVIQDGYAPMQVSLNQPGMHNVQNACAAIAIAR 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASMKAAIS 358
            L        KAL+ F     R  RY                 + + Y  +P    A IS
Sbjct: 292 ELGVSDHATQKALTEFTGVGRRFTRYGEISFSAVNDKPAGSFALVDDYGHHPVETAATIS 351

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALK 415
                 P   GRR  VL         ++    D  +VLS  +   ++ V+ +G   +   
Sbjct: 352 AARGAYP---GRR-LVLAFQPHRYTRTRDLFEDFVKVLSTTDMLLLAEVYAAGEQPIVAA 407

Query: 416 DA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           D   L  ++ V       + E +  +   I + + DGDVV+   + S 
Sbjct: 408 DGRTLAHALRVAGKVDPVFVEHIVDMPATIMNIVRDGDVVITMGAGSI 455


>gi|303251841|ref|ZP_07338012.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249142|ref|ZP_07531149.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649271|gb|EFL79456.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854430|gb|EFM86626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 475

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 152/449 (33%), Gaps = 54/449 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGAL 95
            A  G       FI H  +  AG  VV            V +     IPV     +L  +
Sbjct: 59  LAEAGAKV----FIGHQAENVAGASVVVASSAIDDSNPEVRAAKEARIPVIQRAQMLAEI 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IA+ G+ GKTTT  M+++  +  K         N  +        
Sbjct: 115 MRFR---------HGIAVAGTHGKTTTTAMISMIYTEAKLD---PTFVNGGLVKSAGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++ +   +  
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEQMRATYVKFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     +  +      + + ++G S+ AD+++  ++Q   Q    V
Sbjct: 218 RNLPFYGLAVMCADDETVIEIAPQV----GRQVLTYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ ++V+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +   I                 PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSL 441
              +       +L +Y      + G    AL  ++     V        D L   +   +
Sbjct: 394 QVDAL-----IMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQII 448

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            DGD+++ + + S    R+   L E + A
Sbjct: 449 QDGDLILAQGAGSV--SRISRGLAESWKA 475


>gi|229545504|ref|ZP_04434229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|307268256|ref|ZP_07549640.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|307275646|ref|ZP_07556787.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|307280524|ref|ZP_07561573.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|307295969|ref|ZP_07575801.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|229309420|gb|EEN75407.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|306496300|gb|EFM65879.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|306504072|gb|EFM73288.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|306507751|gb|EFM76880.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|306515416|gb|EFM83947.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|315025920|gb|EFT37852.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2137]
 gi|315028958|gb|EFT40890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4000]
 gi|315033232|gb|EFT45164.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0017]
 gi|315143492|gb|EFT87508.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2141]
 gi|315147575|gb|EFT91591.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4244]
          Length = 456

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 79  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 111

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 112 RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 163 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 216 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKADFVG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 270 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 325 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 378

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 379 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 432

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 433 GAGDVQKFEQAYETLL 448


>gi|160894558|ref|ZP_02075334.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
 gi|156863869|gb|EDO57300.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
          Length = 460

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 150/414 (36%), Gaps = 42/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +   +  + +IP+     +LG +               +A++G+ GKTTT  M
Sbjct: 77  AAIHPDNEEFQAAKAKNIPMLTRAQLLGQIMTNYKY--------SVAVSGTHGKTTTTAM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  +             +  I V   +  +  ++  G  +  ++   E     H   P+
Sbjct: 129 LSYIM--------LEADVDPTISVGGIIDDIGGNIRVGSSDYFVTEACEYTNSFHAFSPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  +   HL  FSGIEEIA +         + G + +N D  +F+ +          
Sbjct: 181 ISIILNVDADHLDFFSGIEEIAESFHTFATKTPENGKVIVNGDMKYFDTVTRDLKC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            + +FG+     +     +          + + G+++ ++  H  G H   N L  +   
Sbjct: 237 QVITFGEDPKNHYSAANIRFDEFGRPTYTLVIDGENITDITLHVFGKHNVYNSLSAIAAA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           + L  D+D      +     +G  +R+           + + Y  +P  + A ++     
Sbjct: 297 TELGIDIDAIK---AGLLHCKGAERRFEYKGTILDNVKVMDDYAHHPTEIAATLAAAKNT 353

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  D  ++  LS   H+ +A++ +        +S      L
Sbjct: 354 DYHELWCVFQPHTYSRTYALFDDFAKV--LSVCDHVIVADIYAAREKDTGLVS---SKQL 408

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +        Y  +   +  ++  +    D+++   + +     + N L+++
Sbjct: 409 AEKIASYGTDAFYLPSFTDIENYLLKNCKKNDLLITMGAGNV--DSIGNELIKK 460


>gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
 gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
          Length = 536

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 161/532 (30%), Gaps = 77/532 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L +   G   G      V   +I S+ +     F A+ G    G  F   + + 
Sbjct: 1   MTSLKQLAEICGGTLTGPWEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATFAADS-KA 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
            A L       +    +  +P   VD+V   +      V      +   I ITG+ GKTT
Sbjct: 60  AAVLTDAAGQRIIDDATTPLPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVD-VDFGIF 165
           T  ++  AL         IG+    I                    LARM  + V   + 
Sbjct: 120 TSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHLVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GT 222
           E+    L   R   H V   +   T ++  HL     +E+   AKA +FE  E     GT
Sbjct: 180 EVSSHALQLGR--VHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGT 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCS------EQSWMEVQ 275
             +  +D + E ++A +        +Y  G +  A+     W   S       +  + + 
Sbjct: 238 AVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRLS 297

Query: 276 LQG----KSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRY 330
           + G    + ++      G     N L+ L  +  +    + +   A+      +  G+  
Sbjct: 298 IAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRMQ 357

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                Q F  ++D  Y   P +++A +  L    P    R   VLG     G        
Sbjct: 358 LVEEGQDFLAMVD--YAHKPGAVQAVLGSLHDYLPDPAARIGIVLGA---GGNRDHDKRA 412

Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-------------VHYSE 428
            +  + +      V+++  +           A+       +                   
Sbjct: 413 IMGRIAAEL-ADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVP 471

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS-------SNSCG----FYRLINLLLEE 467
                     +    GD VVV  K        +           L   L   
Sbjct: 472 DRAEAIAAAVTWARPGDAVVVAGKGHEKGQLVAGKMHPFDDVEELATALKNR 523


>gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
 gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis CO92]
 gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate
           ligase [Yersinia pestis CO92]
 gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
          Length = 490

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 164/464 (35%), Gaps = 45/464 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 11  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 70

Query: 81  L----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ 
Sbjct: 71  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 130

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-S 239
            +     V T ++  HL     +    +AK  +F   +      +N DD       ++  
Sbjct: 191 ALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDDVGRRWLSQLP 249

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A+ +    +  K  N       K       + +         E+    +G     N+L+
Sbjct: 250 QAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLV 309

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +    +   + A     P  GR + +    N      +   Y   P +++ A  
Sbjct: 310 ALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA-- 363

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+    H  G+   V G   +  +  +     +AE L+      V ++  +  +     
Sbjct: 364 -LAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTDDNPRSEEPQA 418

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   L  +  V                  + DVV++  K 
Sbjct: 419 IVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 462


>gi|306836487|ref|ZP_07469460.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
 gi|304567650|gb|EFM43242.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
          Length = 487

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 140/428 (32%), Gaps = 45/428 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +    +IP+    D+L AL +           T + + G+ GKT+T  M
Sbjct: 81  AAIPQGNPELVAARENNIPLIRRSDLLAALMEGH---------TQVLLAGTHGKTSTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              A+             +    +   L R   +   G  E  ++   E         P 
Sbjct: 132 AVSAMQHAG--------LDPSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYSPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGI 244
           IAVIT   P HL  F   +      A+  + +    G + +  +D     +  ++ + GI
Sbjct: 184 IAVITNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGI 243

Query: 245 KTIYSFGKSKNA---------DFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMA 293
             +  +G ++ A              +         +++ L G  +S+       G+HM 
Sbjct: 244 -NVIGYGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLPGVEESVSYQLQIPGHHMV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS- 352
            N +  L    +   +  T  + L+ F     R +       QG    + + Y  +P   
Sbjct: 303 LNSMAALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAHHPTEV 362

Query: 353 -MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
                 +     +    GR IA       +   +  F  + A+         VL +Y   
Sbjct: 363 AAVLRAARAKVAAEGNGGRVIACF--QPHLYSRTMEFDAEFAQALALADAVVVLDIYGAR 420

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              + G     + + +P  + V +          + S    GD+++   + S     +  
Sbjct: 421 EQPVEGITSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDIILTIGAGSITL--VAA 478

Query: 463 LLLEEFPA 470
            +L+E  A
Sbjct: 479 EILDELRA 486


>gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
 gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
          Length = 460

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 157/403 (38%), Gaps = 44/403 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    + + S    +I V    ++L  + +L            IAI+GS GKTTT  +
Sbjct: 75  SAISPTNEEIISAKKKNIIVIPRGEMLAEIMRLKQG---------IAISGSHGKTTTTSL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  +   K    CI   N+      + A   ++ ++ + E   S    +R     + P 
Sbjct: 126 ISQIMIEAKLNPICIIGGNH--FNLKSNAYCNLNSEYMVCEADESDGSFLR-----LSPV 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            +V+T I   HL  +  +E++  A  +    +   G  FL +++   + L         K
Sbjct: 179 FSVVTNIDNDHLDYYGNVEKLRLAFLDFINKVPFYGCSFLCFENDVVKDLAKSVS----K 234

Query: 246 TIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
             YS+G S   DF + K   K    +++ +   + K + E     IG H   N L ++ +
Sbjct: 235 KYYSYGFSNEYDFYVDKSSIKTEEFKTYFKAYYKDKFLGEFELPLIGEHNVLNSLASIAV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D DT  KAL  F   EG G+R    L     TL D+ Y  +P  +KA +S L  
Sbjct: 295 AYHLDIDTDTIKKALKTF---EGVGRRLN-KLYDKEITLFDD-YGHHPTEIKATLSSLRN 349

Query: 363 ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R   +L D       +     D   +  +Y      ++G    
Sbjct: 350 AYKDRRIIAIFQPHRYSRTQLLLNDF-----ENAFLDADNLIITDIYAAGESPIAGISGE 404

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +   +  + ++ Y + ++ +   ++    DGD+++   + + 
Sbjct: 405 TICKIVKNN-NIKYIKNIEDILPELEKIKKDGDIIITLGAGNI 446


>gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
 gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
          Length = 513

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 50/457 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---GSLSIP 84
            G++ DSR++ P + + A+ G H   H     A    AG V V TD V +    G L++P
Sbjct: 44  TGVTHDSRAVLPGDLYAALPGAHV--HGADFAAGAVAAGAVAVLTDPVGAAALSGRLAVP 101

Query: 85  VFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   DD    L      +     S  T++ +TG+ GKTTT  +L   L +   T   +G+
Sbjct: 102 VLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGTNGKTTTAFLLDAGLRAAGYTTGLLGT 161

Query: 143 YNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +   +               L    V+   G   + +S     +     +R   A 
Sbjct: 162 VQTRVAGTVVPSVRTTPESGDLQALLATMVERGVGAASMEVSSHALAQHRVDALRFAGAA 221

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E+  +AKA +FE   ++    +  DD +   L A        ++ 
Sbjct: 222 FTNLSQDHLDFHPTMEDYFAAKAALFEP-ARSAAAVVCVDDDWGRRLAALRPDARTYSV- 279

Query: 249 SFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                + AD+           S    +   G   ++     G     N L  L +++ + 
Sbjct: 280 ---TGRPADWWPEDVVAGPGGSVFRALGPDGAKADLSLALPGRFNVANALGALALLAAVG 336

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++ A + +S      GR +R      Q F  L+D  Y   P +++   ++L+ + P  
Sbjct: 337 VPLEAAAEGISSLPGVPGRMER--IDAGQPFLALVD--YAHTPGAVE---TLLATVRPIV 389

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----------FHVLALKD 416
            GR + VLG     G+  ++    +    +      V+ S              +LA   
Sbjct: 390 TGRVVVVLGC---GGDRDRAKRPLMGAAAARLADLAVFTSDNPRSEDPARILEQMLAGAR 446

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             P +  +               +    D V+V  K 
Sbjct: 447 GAPGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKG 483


>gi|261338915|ref|ZP_05966773.1| hypothetical protein ENTCAN_05113 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318740|gb|EFC57678.1| UDP-N-acetylmuramate--alanine ligase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 491

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 134/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++ ++KQ   Q    +  Q K +  V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEEYKQSGAQGHFTLARQDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLDAVNGKSGSAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR 420
             + +          ++  + D A VLS          Y+     + G    +L   +  
Sbjct: 375 -LVMIF--QPHRFTRTRDLYDDFANVLSQVDTLLMLDVYSAGETPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V          +   +   L   D+++++ + + G  ++   L E
Sbjct: 432 RGKVDPILVPEPAQVAEILAPVLTGNDLILIQGAGNIG--KIARTLAE 477


>gi|307720865|ref|YP_003892005.1| Mur ligase middle domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978958|gb|ADN08993.1| Mur ligase middle domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 481

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 135/360 (37%), Gaps = 36/360 (10%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            + +     R      II ITGS GKT+ K      LS   K YA   S N   G+   +
Sbjct: 146 YMKEAKKKLRSMKDLEIICITGSYGKTSIKNFTAQILSHKFKVYATPRSVNTLGGIIADI 205

Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  D +  + E G    G+I  +T  + P   V+  +  AH+  F  ++ I + K E
Sbjct: 206 NNNLSQDTEIYVCEAGARQSGDIYEITTFLEPQTVVVGRVGEAHIEYFKSLKNIIATKLE 265

Query: 213 IFEGLEKTGTIFLN---YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           I +   K    F++    D+               + +  FG        ++      E 
Sbjct: 266 IMQS-PKLKQAFIHTSVTDEPH-------------EKVTFFGDE------IKNIDAGLEG 305

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +  +++L+GK++ +    +G     N+ + + I        D  I A+    P E R + 
Sbjct: 306 TDFDIELEGKTLHLHTDILGAFQTMNIAVAVRIAKSFGLSDDEIIDAVKNLEPVEHRLQL 365

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +     G   ++D+ YN N   M   I    ++    +GR++ V   + E    S   +
Sbjct: 366 IK----AGGKIILDDGYNGNIDGMLEGI----RLCSLHKGRKVIVTPGLVES---SDELN 414

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L E ++      V ++G     L D      +    +    +   + +    GD+++ 
Sbjct: 415 LKLIEAINKV-FDIVIVTGSLNAELFDKNLHVKNKIMLKDKSAMVDVLANQTKSGDIILF 473


>gi|313673682|ref|YP_004051793.1| UDP-N-acetylmuramate--l-alanine ligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940438|gb|ADR19630.1| UDP-N-acetylmuramate--L-alanine ligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 460

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 142/417 (34%), Gaps = 43/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +       IPV    ++L  L ++            + ++GS GKTTT  M
Sbjct: 72  SAVKQDNPELKYALENYIPVIQRGEMLAELMRMKY---------SVVVSGSHGKTTTSSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +S           N  + +   L R   +   G  ++ ++   E      ++ P 
Sbjct: 123 IAEIFNSAG--------LNPTVVIGGRLNRNENNAIVGKSDIMVAEADESDRSFLMLYPT 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           ++VIT I   H+ ++   +++  + AE    +   G   +  DD     +      L  K
Sbjct: 175 VSVITNIDFEHMESYKDFDDVKQSFAEFANKVPFYGANIICLDDPNVADII----PLLKK 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD +    K     S   V + GK    +     G H   N L  +G   
Sbjct: 231 KFVTYGFSARADIRGTDVKIEGFGSSFNVSVHGKPWGRIKLSVPGEHNVLNALGAIGAGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   K L  F    G  +R     ++    +ID+ Y  +P  + A +  +    
Sbjct: 291 EFDIPYEDIKKGLEDFS---GVQRRLTIRYDKDEIKVIDD-YGHHPTEIIATLKAIR--D 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALK 415
            + + + I +          ++    + ++         +  +Y  S   + G     L 
Sbjct: 345 AYDDHKLIVIF--QPHRYSRTKLLMNEFSKAFFDADELFITDIYAASEKPIDGITSDVLV 402

Query: 416 DALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYR-LINLLLEEF 468
             + +     V++    D    FI   +    + +   + +     R + + L +++
Sbjct: 403 GEIRKRGFKSVYHINKPDDFLSFINDKVERKTIFLTLGAGNITNLSREITDYLEKKY 459


>gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ubonensis Bu]
          Length = 512

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 79/472 (16%), Positives = 159/472 (33%), Gaps = 42/472 (8%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +  A+      + P      +  D+RS+   + F A      D   FI  AV +GA  
Sbjct: 12  QQIAAALAWLRQHVAPAA---QLHADTRSLEAGDVFLAYAVDGADNRAFIADAVARGAAA 68

Query: 68  VVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           V+   D + A+  +         + L                  + +TG+ GKT+  + +
Sbjct: 69  VLYQPDGLAAAPAAPVALAVPALNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSCTQWI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGMS 170
             AL+++ +  A IG+  + +   L               +LA++       +  E+   
Sbjct: 129 AAALTALDRPCALIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSH 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L + R   +     IAV T +   HL      +   +AKA++F          +N DD+
Sbjct: 189 ALHQGR--VNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFAW-RGLRAAVVNRDDA 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
               L A          Y  G +  A    +      +  +  +   ++      +V   
Sbjct: 246 AGSRLLASLSGQVRTIAYGIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEVG 305

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  LG +       D A+  ++   P  GR +R      Q    L+   Y
Sbjct: 306 TLGTFNVSNLLAVLGTLLAADVPFDAALAEVARLEPVNGRMQRL-GGRLQNDEPLVVIDY 364

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  L  I+    G  + + G   +     +     +AE L+      V +
Sbjct: 365 AHTPDALEKTLDALRPIAVARGGALVCMFGCGGDRDATKRPLMGAIAERLA----DEVVV 420

Query: 407 SGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
           +  +  +         +   +    +    E     +   ++ +  +  VV+
Sbjct: 421 TSDNPRSEDPQRIIDQIVAGMTAPDNARRIEDRASAILQAVRGAAREDVVVL 472


>gi|152968676|ref|YP_001333785.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330012006|ref|ZP_08307223.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
 gi|166224697|sp|A6T4N4|MURC_KLEP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150953525|gb|ABR75555.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328533995|gb|EGF60647.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
          Length = 491

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 137/412 (33%), Gaps = 53/412 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K++ +V  +  G H A N    + + +    D    +
Sbjct: 256 ADVRVEDYRQVGAQGHFRLVRQDKAILQVTLNAPGRHNALNAAAAVAVATEEGIDDRAIL 315

Query: 315 KALSVFHPKEGRGKRY---------RCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +AL  F    G G+R+               G   LID+ Y  +P  + A I       P
Sbjct: 316 RALESFQ---GTGRRFDFLGEFPLAEVNGKPGSAMLIDD-YGHHPTEVDATIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKD 416
                 + V          ++  + D A V         L +Y      + G    +L  
Sbjct: 372 DKN--LVMVF--QPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCR 427

Query: 417 ALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +     V              + S L   D+V+V+ + + G  ++   L E
Sbjct: 428 TIRGRGKVDPILVPDSTQAAEMLASVLTGNDLVLVQGAGNIG--KIARHLAE 477


>gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis KIM 10]
 gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10]
 gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D106004]
 gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 495

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 164/464 (35%), Gaps = 45/464 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ 
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 135 KTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-S 239
            +     V T ++  HL     +    +AK  +F   +      +N DD       ++  
Sbjct: 196 ALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDDVGRRWLSQLP 254

Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A+ +    +  K  N       K       + +         E+    +G     N+L+
Sbjct: 255 QAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLV 314

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +    +   + A     P  GR + +    N      +   Y   P +++ A  
Sbjct: 315 ALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA-- 368

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+    H  G+   V G   +  +  +     +AE L+      V ++  +  +     
Sbjct: 369 -LAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTDDNPRSEEPQA 423

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   L  +  V                  + DVV++  K 
Sbjct: 424 IVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
 gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
          Length = 502

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 153/480 (31%), Gaps = 47/480 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQKGA 65
             +LL+ +            +  ++ DSR   P   F  + G   DG  F         A
Sbjct: 5   LDELLRDVGLTPTVGGSNPQIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALNAGAA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLAV--AARLRSKATIIAITGSVGKTTT 122
             V+            S  V  V D L + L +LA    +R   +  ++ +TG+ GKTTT
Sbjct: 65  AAVIGPAAAAVDPPGDSDQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFE 166
             ++     +  ++ A  G+  N        A                           E
Sbjct: 125 TYLIEHLALACGRSTALFGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLAAME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG--TI 223
           +    L + R      R   AV T +   HL     +E+   AKA +F E L + G    
Sbjct: 185 ISSHALAQHR--VAGCRFAGAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPARA 242

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +   L  +  A   ++  +      A+ ++      S      +         
Sbjct: 243 VVNGDDPWGAKLAERLGAQCWRSSLT---DPTAELRMEDLCMTSHGVSGRLISPLGEGAF 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342
               +G     N+L  +G++      +   ++A+S F    GR +R             +
Sbjct: 300 QSPLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAITTTLPTV 359

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P  ++   + L+   P  EG+ I V G     G+  +     +A + +     
Sbjct: 360 LVDYAHTPDGLE---NALAAARPFAEGKLICVFGC---GGDRDRGKRPQMAAIAARL-AD 412

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +            +   +P  +                +     D+V+V  K 
Sbjct: 413 RVVVTSDNPRTEDPLRILEDVVKGIPDGVDRVVDPDRGAAIAQTIAEADAADLVLVAGKG 472


>gi|238797706|ref|ZP_04641201.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
 gi|238718458|gb|EEQ10279.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
          Length = 491

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 136/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVQIASYRQEGPQGHFTIKRLDKPLMTVTLNAPGRHNALNAAAAIAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +  + AL+ F     R              +    ++ + Y  +P  + A +  
Sbjct: 306 EEGIEDEDILSALAGFQGTGRRFDFLGNFPLALVNGKEGSAMLVDDYGHHPTEVDATVKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 366 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEAPIPGAD 421

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        + +   +   L   D+++V+ + + G  ++   L E
Sbjct: 422 SRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQGAGNIG--KIARKLAE 477


>gi|301155887|emb|CBW15356.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus parainfluenzae
           T3T1]
          Length = 475

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 157/455 (34%), Gaps = 56/455 (12%)

Query: 35  RSIAPQE-AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFG 87
           R        F   +  +            +GA +VVV++ +      L       IPV  
Sbjct: 58  RLAQAGAKIFIGHQAENV-----------QGASVVVVSSAIHEDNPELIAAKQNRIPVIQ 106

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              +L  + +             IA+ G+ GKTTT  M+++  +  K         N  +
Sbjct: 107 RAQMLAEIMRFR---------HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGL 154

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEI 206
                         + I E   S    +      ++P ++V+T I P H+  +    E++
Sbjct: 155 VKSAGKNAHLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYEGDFEKM 209

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +   +    L   G   +  DD+    L  +      + + ++G S++AD+++  ++Q 
Sbjct: 210 KATYVKFLHNLPFYGLAVMCADDAVLMELVPQV----GRQVLTYGFSEHADYRIEDYEQT 265

Query: 267 SEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             Q    V    G+ + V+ +  G H A N    L +        +  ++AL+ F     
Sbjct: 266 GFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKEEGIGNEAILEALADFQGAGR 325

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  +    +       + + Y  +P  +   I    +       +RI ++          
Sbjct: 326 RFDQLGEFIRPNGKVRLVDDYGHHPTEVDVTIKAARE---GWGDKRIVMIFQPHRYSRTR 382

Query: 386 QSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFL 435
             F         +D   +L +Y      + G    AL  ++     V        + L  
Sbjct: 383 DLFDEFVQVLSQVDALIMLDVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTEQLGD 442

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            +   + DGD+++ + + S    ++   L E + A
Sbjct: 443 VLDQIIQDGDLILAQGAGSV--SKISRGLAERWKA 475


>gi|146310301|ref|YP_001175375.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
 gi|167017282|sp|A4W6J4|MURC_ENT38 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145317177|gb|ABP59324.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
          Length = 491

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 130/408 (31%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IA+ G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  + Q   Q    +  Q K +  V  +  G H A N    + + +    + D  +
Sbjct: 256 ADVRVESYTQTGAQGHFTLARQDKELLHVTLNAPGRHNALNAAAAVAVATEEGIEDDDIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEYPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y    + + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLCQVDALLMLDVYAAGEMPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V              +   L   D+++++ + + G  ++   L E
Sbjct: 432 RGKVDPILVSDPAQAAEMLAQVLTGNDLILIQGAGNIG--KIARNLSE 477


>gi|24111536|ref|NP_706046.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           301]
 gi|30061658|ref|NP_835829.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|44888197|sp|Q83MF8|MURC_SHIFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24050295|gb|AAN41753.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30039900|gb|AAP15634.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|281599453|gb|ADA72437.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2002017]
 gi|313646526|gb|EFS10987.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|332762290|gb|EGJ92557.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2747-71]
 gi|332764937|gb|EGJ95165.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-671]
 gi|333022321|gb|EGK41559.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-304]
          Length = 491

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|283783878|ref|YP_003363743.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
 gi|282947332|emb|CBG86877.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
          Length = 491

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFSLLRQGMPELRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLAPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPD--- 372

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
            +  V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 373 -KHLVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|213646586|ref|ZP_03376639.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 479

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 127/398 (31%), Gaps = 43/398 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    D D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              +          +   +   L   D+++V+ + + G
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG 469


>gi|254495866|ref|ZP_05108776.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
 gi|254354902|gb|EET13527.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
          Length = 458

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 159/440 (36%), Gaps = 47/440 (10%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            +   K  H  G D ++      +  V +N   V +     IPV     +L  L +    
Sbjct: 52  VYLGHKAEHMQGADVVVR-----SSAVGMNNPEVVAAREQLIPVIPRAAMLAELMRFR-- 104

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV 160
                    IA+ G+ GKTTT  +++  L+      +  IG   N  GV   L + P   
Sbjct: 105 -------HGIAVAGTHGKTTTTSLVSSLLAEGGLDPSFVIGGKLNSAGVNAKLGQSP--- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
            + + E   S    +      ++P +A++T I   H+S +    +++ +   E    L  
Sbjct: 155 -YFVVEADESDASFL-----FLKPMMAIVTNIDADHMSTYEDNFDKLRTTFLEFLHHLPF 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +  DD     +         +   ++G +  A ++   W Q    S   V     
Sbjct: 209 YGLAVVCTDDPEVRNILQSIE----RPTLTYGFNDEAHYRAVDWTQNELLSEFTVARPAP 264

Query: 280 --SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              + +     G H   N L  + I + L       + AL+ F     R +       + 
Sbjct: 265 YPPLNICFQYPGRHNVLNALAAIAIATELGVSDAAIVSALAKFQGVGRRFQMLGEKHFER 324

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+ + Y  +P  + + I    ++ P+   R + V          +QS H    +VLS
Sbjct: 325 GSALVVDDYGHHPQEIFSTIDAFRRVWPNK--RLVHVF--QPHRYSRTQSLHDQFVDVLS 380

Query: 398 L---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L         Y+     + G     L   +  +           L + +   ++DGDV++
Sbjct: 381 LSDKLFLFDIYSAGEAAIPGISSEGLAQKIRGNDKNVTMVNEQSLKMQLDEFILDGDVIL 440

Query: 449 VKSSNSCGFYRL-INLLLEE 467
           ++ + + G  ++ +NL+ E+
Sbjct: 441 IQGAGNIG--QIAVNLMQEK 458


>gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia
           MC0-3]
          Length = 515

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 147/454 (32%), Gaps = 42/454 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIP 84
            +  D+RS+   + F A      D   F+  AV +GA  V+   +      A+       
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                D L                  I +TG+ GKT+  + +  AL+++ +  A IG+  
Sbjct: 90  AVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGTLG 149

Query: 145 NHIGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAV 188
             +   L               +LA++       +  E+    L + R   +     +AV
Sbjct: 150 TGMPGQLVPSGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--ANGTAFDVAV 207

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      +   +AKA++F          +N DD+    L  K         Y
Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266

Query: 249 SFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             G +   D          +     +   ++      +V    +G     N+L  LG + 
Sbjct: 267 GIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGALL 326

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D A+  +       GR +R      Q    L+   Y   P +++  +  L  I+
Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 385

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
               GR + + G   +     +     +AE L+      V ++  +  +         + 
Sbjct: 386 AARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DEVVVTSDNPRSEDPQHIIDQVV 441

Query: 416 DALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
             +         E     +   ++ +  +  VV+
Sbjct: 442 AGMTAPDRARRIEDRASAILQAVRGAAREDVVVL 475


>gi|295695332|ref|YP_003588570.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
 gi|295410934|gb|ADG05426.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
          Length = 466

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 153/436 (35%), Gaps = 49/436 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI-----------PVFGVDDVLGALNKLAVAARLRS 106
              V++GA + + +           +            V      +  L++  + A +  
Sbjct: 44  DELVRRGAVIAIGHRANQVDGADCVVYSSAVSPDNPELVEARRRGVRILHRSELLAEILQ 103

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  M+   ++            +    V   ++ +  +   G+  
Sbjct: 104 AKKGIAVAGAHGKTTTSSMIAFVMNQAG--------LDPTYIVGGVISNLGENAKAGLGP 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P++AV+T I P HL N+ G  E +  A       + + G   L
Sbjct: 156 YAVAEADESDGTFLNYHPYVAVVTNIEPDHLENYGGKFENLRGAYKRFLGQVREGGLAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD     L ++   L  +T++ +G S  AD+  +        S   V  + + + ++ 
Sbjct: 216 CADDPELSNLGSQ---LAGRTVW-YGFSSGADWTAQDVDLHDGHSRCRVFYRREHVGDLT 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   + L  + +         T  + LS F    G  +R++   +     ++D+
Sbjct: 272 LSVPGRHNISDALAAIAVCREAGIPFSTIAEILSSF---RGAKRRFQQIADVAGVLIVDD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFHIDLAEVLS 397
            Y  +P  ++A ++          GRRI  +            + + S +F  D  EV+ 
Sbjct: 329 -YAHHPTEIEATLAAARTT-----GRRIVAVFQPQRYTRTHFLLDQFSYAF-KDADEVII 381

Query: 398 L---YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                 +    ++G     L   +    +  V +      +   + S +  GD+V+   +
Sbjct: 382 TDIYSPVGEQKIAGVSAERLAQLIRERSNERVWFLRQKQDVINDLLSRVHPGDLVLFMGA 441

Query: 453 NS--CGFYRLINLLLE 466
                   +L   L +
Sbjct: 442 GDIWMAARQLAEALQD 457


>gi|89067826|ref|ZP_01155270.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
 gi|89046424|gb|EAR52480.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
          Length = 464

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 147/422 (34%), Gaps = 49/422 (11%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARL 104
            H F     +   GA +VV+++ +      L       +PV    ++L  L ++      
Sbjct: 56  AHIFEGQRAENLEGAEVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRMKSN--- 112

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IA+ G+ GKTTT  M+   L          G ++  +     +     +   G 
Sbjct: 113 ------IAVAGTHGKTTTTTMVASLLDH--------GRFDPTVINGGIIHAYGSNARVGE 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E  +    E     + +   IA++T I P H+ ++   E +     +    +   G   
Sbjct: 159 GEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWGTEEALKKGFYDFVSNIPFYGLAV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SM 281
              D    + L ++   +  + + +FG +  AD +          +  ++ LQG+     
Sbjct: 219 CCTDHPDVQGLVSR---ITDRRVVTFGFNAQADVRAINLTYDKGVAKFDIALQGEGTVIE 275

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +      G H   N L  + +   L    D   +AL+ F       +R+      G   +
Sbjct: 276 DCSLPMPGDHNVSNALSAVAVARHLGMKRDEIREALAAFGGVN---RRFTRVGEVGGVAI 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLA 393
           ID+ Y  +P  + A +    Q +   EGR IAV         LS  F          D+ 
Sbjct: 333 IDD-YGHHPVEIAAVLKAARQAT---EGRVIAV-HQPHRYSRLSSLFDQFCNCFNEADVV 387

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  +Y      + G     L   L R+ H H       D L   ++     GD+VV   
Sbjct: 388 AIGEVYAAGEEPIPGASRDDLVAGLIRAGHRHARAVTDEDDLERLVREQARPGDMVVCLG 447

Query: 452 SN 453
           + 
Sbjct: 448 AG 449


>gi|313893638|ref|ZP_07827206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441782|gb|EFR60206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 460

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 157/452 (34%), Gaps = 54/452 (11%)

Query: 47  KGPHYDGHDFILHAV-----QKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALN 96
           KG    G D    AV     + GA + + +     +     +    + +     V     
Sbjct: 28  KGYDVSGSDVAESAVISKFREMGATVHIGHNKEYVNGVDAVVRSTAIREDNPEIVAAKEQ 87

Query: 97  KLAVAARLRSKATI------IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGV 149
            + +  R      +      IA+ G+ GKT+T  M+   L  +       IG   +++  
Sbjct: 88  GITILHRSDIVKAVLDVTDGIAVAGAHGKTSTTSMIGQILVEADADPTVIIGGEVDYLKG 147

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L +      F + E   S    ++     +RPH  VIT I   H+ ++  ++ + +A
Sbjct: 148 SSCLGKG----HFSVVEADESDGSFLK-----LRPHTIVITNIEDDHMDHYKTMDNLLNA 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             E  E L + G   +  D+     +  +      +   ++G   + D+  +        
Sbjct: 199 FCEFVETLPENGKAIVCGDNESIRYVMNRVK----RNFITYGLDDSNDYVAKNIHYVDST 254

Query: 270 SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRG 327
              ++  +G ++E V     G H   N L    +       +     K L  F    G  
Sbjct: 255 LVYDIYHKGINIERVRLRVPGDHNVLNSLAAFIVAHDCCGVEARVITKGLGKF---IGAK 311

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R+    +     ++D+ Y  +P  +KA +    ++  H   R I V          +  
Sbjct: 312 RRFETKGHVAGVWVVDD-YAHHPTEIKATLKAAKELEKH---RVICVF--QPHRFTRTSL 365

Query: 388 FHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLF 436
              + A          +  +Y+     + G     + +A+       V+Y  ++D L   
Sbjct: 366 LKDEFATAFTSADEVYMTDIYSSGEDPIPGIDGTTIPNAIKEATGQDVNYVPSVDDLPEV 425

Query: 437 IQSSLVDGDVVVVKSSNSCGFY--RLINLLLE 466
           +   +   D+V+   + S   Y  +L+ +L E
Sbjct: 426 LAKVVRPNDLVITMGAGSINQYGPKLLAILEE 457


>gi|21230200|ref|NP_636117.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769810|ref|YP_244572.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993025|ref|YP_001905035.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|23821875|sp|Q8PCJ9|MURC_XANCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81304236|sp|Q4UQX1|MURC_XANC8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082517|sp|B0RVA4|MURC_XANCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21111738|gb|AAM40041.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575142|gb|AAY50552.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734785|emb|CAP52995.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 477

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 139/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + +A AE  + L   G   L  DD     L  K+     + + S
Sbjct: 190 NIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             DT  +AL  F    G G+R+          G    + + Y  +P  ++A   V +   
Sbjct: 306 APDTIARALENF---AGIGRRFNDLGEVTTASGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQVAGLSEVLPDVLQDGDLLLMMGAGDIG 461


>gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 451

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 182/446 (40%), Gaps = 29/446 (6%)

Query: 10  LLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L+Q++     G +P  FV +G+  +  +I   + F  +KG  +DGH  I  AV+ GA   
Sbjct: 9   LIQSVSKEMSGDIPLTFVAHGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAAVENGAAAS 68

Query: 69  VVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +   ++ V      + P+F V+D   A+ ++A         T +A+TG   +  T+ +L 
Sbjct: 69  LWRISEPVPKTLDRTFPLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGDYTRHLTRTVLA 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L    + Y    +    +    ++  MP D D  +F++       +R  + L+ P +A
Sbjct: 129 GMLKKNYRVYLPEETLGEPLPFFSSVLSMPDDTDVILFDVPSRTDDIVRSASELIIPQLA 188

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT- 246
           V+      H +      +IA     I  G++KTGT+F++         + +   +  +T 
Sbjct: 189 VLCCHRDQHEA------DIAGHAVHIEAGMKKTGTVFVD---------RNRWQDVDWQTD 233

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  +G+  ++ F   + ++   +    ++     ++     +      ++L  LG    L
Sbjct: 234 LVEYGEDSDSLFYPEQVREEDGRVLFSIK-GIMFLDFSLPWLMKDHIMSVLAALGPAIHL 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               ++  + +S    ++     +    ++    ++ +      + +K ++ +L  +  H
Sbjct: 293 GMGAESVAQGVSELTMEDFD---FETCHSKDGTVVLVDHGRGLKSGLKYSLGMLKHM--H 347

Query: 367 GEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
              RR+ ++ +  +   L +   H   A+ L    I+ +   G     ++ AL  +   +
Sbjct: 348 HFDRRVLIVDEGFQSNPLKEKIIHEVFADELRD-PITDLITIGEKAFWIRSALNNAGITL 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
           +  + +T       +   L D  +V+
Sbjct: 407 NGGHYQTHHEAMPELTELLKDEALVL 432


>gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
 gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
          Length = 491

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A+IT I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIITNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|238760097|ref|ZP_04621247.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
 gi|238701716|gb|EEP94283.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
          Length = 495

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 138/418 (33%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 91  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 142 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 193

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I P H+       E +          L   G   +  DD     L  +      +
Sbjct: 194 AIVTNIEPDHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + S
Sbjct: 250 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAS 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + D  ++AL+ F     R              +    ++ + Y  +P  + A I  
Sbjct: 310 EEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 369

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 370 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 425

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        D +   +   L   D+++V+ + + G  ++   L E
Sbjct: 426 SRSLCRTIRNRGKLDPILVSDSDTVPEVLAQLLNGDDLILVQGAGNIG--KIARKLAE 481


>gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 471

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 158/455 (34%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++A+TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++      G   +N DD       A        ++   
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIVNADDEVGRRWLASLPDAVAVSMEGH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +    +     + +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H 
Sbjct: 300 YPLTNLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHC 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            G+   V G   +  +  +     +AE  +      V ++  +         + D L   
Sbjct: 353 AGKLWCVFGCGGDRDKGKRPLMGAIAEEFA----DIVVVTDDNPRTEEPRAIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +       M+G    + +++    D DVV++  K 
Sbjct: 409 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 443


>gi|114797447|ref|YP_761699.1| UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas neptunium ATCC
           15444]
 gi|123027693|sp|Q0BXU4|MURC_HYPNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114737621|gb|ABI75746.1| UDP-N-acetylmuramate--alanine ligase [Hyphomonas neptunium ATCC
           15444]
          Length = 474

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 146/429 (34%), Gaps = 54/429 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GAG V+++T +      +       IPV    ++L  + +L         
Sbjct: 58  FIGHKPENVVGAGTVIISTAIRRDNPEVQAARAAGIPVVRRANMLAEITRLKY------- 110

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              + + G+ GKTTT  ++   L         I     H       A    + D+ + E 
Sbjct: 111 --TVCVAGTHGKTTTTSLVACLLDGAGIDPTVINGGIIHAYGSNYKA---GESDWMVVE- 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E       + P  A++T I P H+ ++  ++++  A     E L   G   L  
Sbjct: 165 ----SDESDGTFAKLHPTCAIVTNIDPEHMDHYGTMDKLREAFDTFVENLPFYGFAVLCT 220

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV---- 283
           D    + L A+   +  +   ++G +  AD +        + +  +V+++  + E     
Sbjct: 221 DHPEVQALAAR---VTDRRRITYGFNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRRI 277

Query: 284 ---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGF 338
                   G H  QN L  + +   L A  +    +L+ F   + R            G 
Sbjct: 278 EGLTLPMAGEHNVQNALAAITVALELGASDEQISASLASFGGVKRRFTPVGEWLPAAGGE 337

Query: 339 FTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSF 388
              I + Y  +P  + A +     +           PH   R   +  D     + +   
Sbjct: 338 PVKIIDDYGHHPVEIAAVLKAARAMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQAD-- 395

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDV 446
           H+ +A V   Y      + G     L  ++ R+ H       ++  L   +++    G +
Sbjct: 396 HVLVAPV---YEAGETPIPGITHETLVRSIQRNGHRSARALPSLAELPEVVKTLAGPGAM 452

Query: 447 VVVKSSNSC 455
           VV   +   
Sbjct: 453 VVCLGAGDI 461


>gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
          Length = 515

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 147/454 (32%), Gaps = 42/454 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIP 84
            +  D+RS+   + F A      D   F+  AV +GA  V+   +      A+       
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                D L                  + +TG+ GKT+  + +  AL+++ +  A IG+  
Sbjct: 90  AVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGTLG 149

Query: 145 NHIGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAV 188
             +   L               +LA++       +  E+    L + R   +     IAV
Sbjct: 150 TGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGR--VNGTAFDIAV 207

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL      +   +AKA++F          +N DD+    L  K         Y
Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFAW-RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266

Query: 249 SFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             G +   D          +  +  +   ++       V    +G     N+L  LG + 
Sbjct: 267 GIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGALL 326

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D A+  +       GR +R      Q    L+   Y   P +++  +  L  I+
Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRL-GGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 385

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
               GR + + G   +     +     +AE L+      V ++  +  +         + 
Sbjct: 386 AARGGRLVCMFGCGGDRDATKRPLMGAIAERLA----DEVVVTSDNPRSEDPQHIIDQVV 441

Query: 416 DALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
             +         E     +   ++ +  +  VV+
Sbjct: 442 AGMTAPDRARRIEDRASAILQAVRGAAREDVVVL 475


>gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Rv]
 gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis AF2122/97]
 gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Ra]
 gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis F11]
 gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat
           e ligase MurE [Mycobacterium tuberculosis H37Rv]
 gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis AF2122/97]
 gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE
           [Mycobacterium tuberculosis H37Ra]
 gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis F11]
 gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis W-148]
 gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 4207]
          Length = 535

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 56  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 115

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 233

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 289

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 290 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 350 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 404

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 405 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 456

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 457 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 504


>gi|67459429|ref|YP_247053.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536156|sp|Q4UKN9|MURC_RICFE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|67004962|gb|AAY61888.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia felis URRWXCal2]
          Length = 478

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 139/408 (34%), Gaps = 42/408 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +       IP+    ++L  L +L            +A++GS GKTTT  +
Sbjct: 80  SAINSNNPEIKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +     +      C    N  I    +        ++ I E   S    I      +   
Sbjct: 131 VACLFEAAGL---CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPST 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I P HL  +   E +  A       L   G      D      L      +  +
Sbjct: 183 IAIITNIDPEHLDYYKDFETLIGAFKSFITNLPFYGFAVCCIDHKIVRKLVDD---ITER 239

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNML 297
            I ++G  S++A             S  +V++      G ++  ++     G H   N L
Sbjct: 240 KIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L   +       + F   +   +R+          +ID+ Y  +P  +KA +
Sbjct: 300 AAIAVGIELDFGIKAIKNGFNNFKGVK---RRFTKVAEYNKAVVIDD-YAHHPEEIKATL 355

Query: 358 SVLSQISPHGEGRRIAVL-----GDMCEM-GELSQSFH-IDLAEVLSLYNISHVWLSGFH 410
           +    I+    G+ IA+        M  +  +    F+  D+  +  +Y      + G  
Sbjct: 356 ATAKNIADKQNGKVIAIFQPHRYSRMQHLFDDFMLCFNDADMIYITDIYAAGEEPIEGIT 415

Query: 411 VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              L + + ++ H    ++   +D     I  +   GD++++  + + 
Sbjct: 416 SQNLVNKITKNKHHDQANFLAELDDAVEVIIDNASSGDMIIMMGAGNI 463


>gi|331650988|ref|ZP_08352016.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
 gi|331051442|gb|EGI23491.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
          Length = 491

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    + +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGINDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
 gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 535

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 56  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 115

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 233

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 289

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 290 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 350 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 404

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 405 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 456

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 457 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 504


>gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 507

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 159/476 (33%), Gaps = 51/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +            V G++  S+ + P + + A+ G    G +F   A + GA 
Sbjct: 15  LGDLADRVAATPPEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            ++ +   VA      +PV  V D   AL ++A        +  T+I +TG+ GKT+T  
Sbjct: 75  ALLTDPAGVALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELG 168
           ++   L +       IG+    +                L  M        VD  + E+ 
Sbjct: 135 LVESGLRAAGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVS 194

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     VR  +   T     HL   +   +  +AKA++F+G  +     LN+D
Sbjct: 195 SHALAMGR--VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHD 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D     L    H  G  T YS     +A +               +    G ++      
Sbjct: 251 DPALRPL----HKPGTVT-YSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVAL 305

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L+ + ++  +  D +TA + ++      G   R            + + Y 
Sbjct: 306 PGRHNVANALLAVALLVAVGVDPETAARGVAACGGVPG---RLELVSGDAPVRGVVD-YA 361

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               +++A +  L  ++   EGR I VLG     G+  +     +  V +      V ++
Sbjct: 362 HKANAIEAVLIALRDLT---EGRLICVLGA---GGDRDRGKRPVMGGVAA-RGADVVLVT 414

Query: 408 GFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +      A  R+              V                   GDVV V  
Sbjct: 415 DDNPRTEDPAAIRAEVLAGAYAAATPARVIEVPGRRAAIEEAVRVAEPGDVVAVLG 470


>gi|82775498|ref|YP_401845.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella dysenteriae Sd197]
 gi|309787233|ref|ZP_07681845.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
 gi|109892738|sp|Q32K01|MURC_SHIDS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81239646|gb|ABB60356.1| UDP-N-acetyl-muramate:alanine ligase [Shigella dysenteriae Sd197]
 gi|308924811|gb|EFP70306.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
          Length = 491

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  + V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPIRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLAPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 496

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/465 (15%), Positives = 170/465 (36%), Gaps = 47/465 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            + +  +N I ++S+ I   + F A+ G    G +FI  A++ G+ ++++ T  +   G 
Sbjct: 18  DISKIKLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILKHGI 77

Query: 81  LS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     IP+    ++  +L++L             +I ITG+ GKTT    +   L  + 
Sbjct: 78  IYFIKNIPIIYFYNLNYSLSELSGKFYLHPSRYMNVIGITGTNGKTTISHFIAKWLFLLG 137

Query: 135 KTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFL 178
           +    IG+        +  ++                +  +++  + E+    L + R  
Sbjct: 138 EKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQNR-- 195

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +    A+ + ++  H+     + +   +K ++F  L       +NYDD   +    K
Sbjct: 196 VNNINFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKLNVYKY-IINYDDVIGKNWIKK 254

Query: 239 SHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                I +    S  K KN    ++        + + +     S  +     G     N+
Sbjct: 255 IPNSIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNL 314

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L++   +  L  +  +            G   R +    +    +I + Y   P +++  
Sbjct: 315 LLSFVALLTLGYNFKSLANVAENLTMPNG---RMKIFYVKKIPRVIVD-YAHTPDALE-- 368

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-------- 408
             VLS I  H +    ++ G     G+  +S    + ++  LY+I+ +  +         
Sbjct: 369 -KVLSAIKLHFKKNIWSIFGC---GGDRDKSKRRVMGKICDLYSINIILTNDNPRSESET 424

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +K  +     V+   + +    F   +  + D+V++  K 
Sbjct: 425 KIFNDIKIGIKNLNKVNIIPSREHAIKFAIDNSNEKDIVLILGKG 469


>gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
 gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
          Length = 492

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 99/452 (21%), Positives = 165/452 (36%), Gaps = 38/452 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G++ DSR + P   F A+ G   DG  F   A   GA  V       A +   +  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPADLPEATA- 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+  
Sbjct: 84  WIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASLGTVG 143

Query: 145 ---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          + + +  TLAR+  +    +     SH  E R L   V    A  
Sbjct: 144 IVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRL-DGVELTAAAF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G   I 
Sbjct: 203 TNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAG-HAIR 261

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+  +   +L +         + +    K   V    +G    +N L+  G+     A
Sbjct: 262 TTGRGGDF-IRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLALATQA 320

Query: 309 DVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    +      G  G+  R     G   L+D  Y   P +++    VLS + P  
Sbjct: 321 GQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---HVLSALRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GR + V G         +     +AE L+      V ++  +    + A  R+  +  +
Sbjct: 376 SGRLVVVFGCGGNRDAGKRPIMGAIAERLA----DRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 428 ETMDGL---FLFIQS---SLVDGDVVVV--KS 451
              + +      I++    L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRAGVRDLRAGDVLVVAGKG 463


>gi|16128084|ref|NP_414633.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89106974|ref|AP_000754.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170021553|ref|YP_001726507.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079730|ref|YP_001729050.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495590|ref|ZP_03002860.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|238899492|ref|YP_002925288.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|254037506|ref|ZP_04871583.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|256025405|ref|ZP_05439270.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia sp. 4_1_40B]
 gi|300905500|ref|ZP_07123264.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300919646|ref|ZP_07136137.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300923127|ref|ZP_07139187.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300949891|ref|ZP_07163854.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300955957|ref|ZP_07168290.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|301028574|ref|ZP_07191804.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|301303808|ref|ZP_07209928.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|301330128|ref|ZP_07222797.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301646403|ref|ZP_07246285.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|307136692|ref|ZP_07496048.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli H736]
 gi|331640544|ref|ZP_08341692.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|127536|sp|P17952|MURC_ECOLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028987|sp|B1IR87|MURC_ECOLC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620033|sp|B1XC68|MURC_ECODH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509769|sp|C4ZRI6|MURC_ECOBW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|40859|emb|CAA38868.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli]
 gi|42056|emb|CAA36868.1| (UDP-N-acetylmuramate: L-alanine ligase) (AA 1-491) [Escherichia
           coli]
 gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|21321972|dbj|BAB96659.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169756481|gb|ACA79180.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli ATCC 8739]
 gi|169887565|gb|ACB01272.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188490789|gb|EDU65892.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|226840612|gb|EEH72614.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|238863750|gb|ACR65748.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|260450702|gb|ACX41124.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli DH1]
 gi|299878385|gb|EFI86596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|300317177|gb|EFJ66961.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|300402650|gb|EFJ86188.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300413286|gb|EFJ96596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300420582|gb|EFK03893.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300450723|gb|EFK14343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300840935|gb|EFK68695.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|300843875|gb|EFK71635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301075373|gb|EFK90179.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|309700302|emb|CBI99590.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli ETEC H10407]
 gi|315134785|dbj|BAJ41944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli DH1]
 gi|315253165|gb|EFU33133.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 85-1]
 gi|315616130|gb|EFU96749.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 3431]
 gi|323939869|gb|EGB36069.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E482]
 gi|331040290|gb|EGI12497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|228660|prf||1808265A murC gene
          Length = 491

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|315174254|gb|EFU18271.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1346]
          Length = 456

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 98/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +    +L    
Sbjct: 79  IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFIARFIELY--- 117

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                 T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 118 ------TSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 163 FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 216 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDDFVG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 270 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 325 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 378

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 379 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 432

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 433 GAGDVQKFEQAYETLL 448


>gi|331681476|ref|ZP_08382113.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
 gi|331081697|gb|EGI52858.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
          Length = 491

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 130/408 (31%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D    +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDKAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|170768600|ref|ZP_02903053.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
 gi|170122704|gb|EDS91635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
          Length = 491

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDNAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 471

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 156/455 (34%), Gaps = 47/455 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
            +DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   VLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L          +  ++ +TG+ GKTTT +++      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYNEPSDQLKLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVG 121

Query: 145 NHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           N +   ++                         F   E+     G ++     ++   +V
Sbjct: 122 NGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSH--GLVQHRVAALKFAASV 179

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   +AK  +       G   +N DD        K   L      
Sbjct: 180 FTNLSRDHLDYHGDMEHYEAAK-WLLYSTHHHGQAIINADDEVGRRWLEK---LPDAVAV 235

Query: 249 SFGKSKNADFQ-----LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           S     N + +       +       + +         E+    +G     N+L+ L  +
Sbjct: 236 SMEDRINPNCRGRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLLLALATL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +   +K      P  G   R       G  T++ + Y   P +++ A+      
Sbjct: 296 LALGYPMADLLKTSERLQPVCG---RMEVFSAPGKPTVVVD-YAHTPDALEKALEA---A 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRS 421
             H  G+   V G   +  +  +     +AE  +   +       +    + + D L   
Sbjct: 349 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDILAGM 408

Query: 422 IHVHYSETMDGLFLFIQSSL---VDGDVVVV--KS 451
           +    +  ++G    + +++    + DVV++  K 
Sbjct: 409 LDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKG 443


>gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis FV-1]
          Length = 478

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 163/462 (35%), Gaps = 45/462 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
           P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S+ 
Sbjct: 1   PERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVA 60

Query: 82  ---SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +PV  + ++   L+ L      +  +   ++ +TG+ GKTTT ++L     ++ +T
Sbjct: 61  EIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGET 120

Query: 137 YACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            A +G+  N +   +               L R  VD       + +S  G I+     +
Sbjct: 121 SAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAAL 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHA 241
                V T ++  HL     +    +AK  +F   +      +N DD       ++   A
Sbjct: 181 SFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDDVGRRWLSQLPQA 239

Query: 242 LGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           + +    +  K  N       K       + +         E+    +G     N+L+ L
Sbjct: 240 VAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +    +   + A     P  GR + +    N      +   Y   P +++ A   L
Sbjct: 300 ATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAHTPDALEKA---L 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------- 413
           +    H  G+   V G   +  +  +     +AE L+      V ++  +  +       
Sbjct: 353 AAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTDDNPRSEEPQAIV 408

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L  +  V                  + DVV++  K 
Sbjct: 409 ADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 450


>gi|315443923|ref|YP_004076802.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315262226|gb|ADT98967.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 475

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 98/452 (21%), Positives = 169/452 (37%), Gaps = 63/452 (13%)

Query: 33  DSRSIAPQEAFFAIK--GPHY-DGHDFILHAVQK---GAGLVVVNT-------DMVASIG 79
           DSR +       A++  G     GHD    A+     G   VV            +    
Sbjct: 47  DSRGL------IALRARGAQVRIGHD--PSALDMLPGGPTAVVTTHAAIPKTNPELVEAR 98

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTY 137
              IPV     VL         ARL    T + +TG+ GKT+T  M+ +AL       ++
Sbjct: 99  RRGIPVILRPAVL---------ARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSF 149

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G            A        G   +  +   +   L +   P +AV+T I   HL
Sbjct: 150 AVGGDLGQ--------AGTNAHHGSGSTFVAEADESDGSLLEY--SPDVAVVTNIEADHL 199

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             +  +E   +   +  + ++  G + +  DD     L  ++ ALGI+ +  +G +   D
Sbjct: 200 DFYGTVENYTAVFDQFVDRIKPGGALVVCVDDPGAAALAERTAALGIR-VLRYGSAPGLD 258

Query: 258 FQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             L  W Q      + + V+ + +   +     G HMA N L  L   +   A++D  + 
Sbjct: 259 ATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAATQAGAEIDAVLD 318

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAV 374
            L+ F   +G  +R+      G   + D+ Y  +P  ++AAI+ L  ++    G R +AV
Sbjct: 319 GLAGF---DGVRRRFELVGTAGGVRVFDD-YAHHPTEVRAAITALRAVAEQTPGARTVAV 374

Query: 375 LGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                 +   +++F  + A          VL +Y      L G     + D +  S  V 
Sbjct: 375 F--QPHLYSRTETFATEFAASLSTADEVFVLDVYAAREQPLPGVSGATIADGV--SAPVT 430

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           Y      +   + +++  GDVVV   +     
Sbjct: 431 YIADFSAVAARVAAAVSAGDVVVTMGAGDVTM 462


>gi|332768881|gb|EGJ99060.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2930-71]
          Length = 476

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 82  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 132

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 133 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 184

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 185 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 240

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 241 ADVRVEDYQQIGPQGHFTLLRQDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 300

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 301 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 359

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 360 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 416

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 417 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 462


>gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
 gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Puerto Rico]
 gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
          Length = 472

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 155/455 (34%), Gaps = 52/455 (11%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G  +GI+ DSRS+ P   F  +      G  F+  AV+ GA  +V            S  
Sbjct: 12  GQASGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHVDHSQI 68

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +             +          +  +TG+ GKT+  +           T A +G+  
Sbjct: 69  IICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128

Query: 145 NHIGVPLTLARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIA 187
             I    TL            E                 +  S  G  +   + V+   A
Sbjct: 129 A-IVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASTA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  HL     +E+  + K ++F E L + G   LN D   +E L+  +     + 
Sbjct: 188 AFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELAAG---RN 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I ++G     D +L + ++ ++   + V++ G+   +     +G     N+L  L IV+ 
Sbjct: 245 IITYGVDTG-DVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAIVAA 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             +        +       GR +        G   +ID  Y     ++K A++ L     
Sbjct: 304 SGSGHRDV--PIDRLASPRGRMELI------GDRIIID--YAHTSDALKHALTSLK--WH 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               + + V G     G+  +     +  V S Y    V ++  +  +      R   + 
Sbjct: 352 GFPQKTVLVFGC---GGDRDREKRKTMGMVASQY-ADVVIVTDDNPRSENPETIRKEIML 407

Query: 426 YSETM-------DGLFLFIQSSLVDGDVVVV--KS 451
           + E         D +   +  ++ +  V+++  K 
Sbjct: 408 HCENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442


>gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena
           XCL-2]
 gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 461

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 121/368 (32%), Gaps = 36/368 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   V       IPV     +L  L ++            IAI G+ GKTTT  + 
Sbjct: 73  AIAKDNPEVCFAKESRIPVIPRAAMLAELMRMRFG---------IAIAGTHGKTTTTSLA 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L          G  +    +   L +   +   G  +  ++   E       + P +
Sbjct: 124 SAIL--------TEGGLDPTFVIGGKLNQFDSNARLGSSQYLIAEADESDASFLHLSPMM 175

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +V+T I   H+         +     E    L   G   +  DD   + +  K      +
Sbjct: 176 SVVTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVAIVCIDDQNIQNMLPKLS----R 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S++AD +  +           V+        VV +  G H   N L  + +  
Sbjct: 232 KIRTYGFSESADIRATEVLHQGLSMHFNVKANDLPEFSVVLNQPGKHNVLNALAAITVAL 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +++  KAL+ F     R + Y           + + Y  +P  ++A +S      
Sbjct: 292 ELDVSIESIQKALAGFGGVGRRFEVYPSRSIGHKNVTLVDDYGHHPTELEATLSTARMAF 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLALK 415
           P    R + V          ++           H DL  +L +Y      ++ F   AL 
Sbjct: 352 PEK--RLVLVF--QPHRYSRTRDLFDEFVQALQHADLLVLLDVYPAGEAPIAAFDSKALL 407

Query: 416 DALPRSIH 423
            A+    H
Sbjct: 408 QAMRLRGH 415


>gi|82542695|ref|YP_406642.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii Sb227]
 gi|187730669|ref|YP_001878901.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii CDC
           3083-94]
 gi|109892737|sp|Q326E4|MURC_SHIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620431|sp|B2U296|MURC_SHIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81244106|gb|ABB64814.1| UDP-N-acetyl-muramate:alanine ligase [Shigella boydii Sb227]
 gi|187427661|gb|ACD06935.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii CDC 3083-94]
 gi|320183622|gb|EFW58465.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098948|gb|EGJ03899.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 3594-74]
          Length = 491

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFLGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|16763519|ref|NP_459134.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161612473|ref|YP_001586438.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990002|ref|ZP_02571102.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230408|ref|ZP_02655466.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234893|ref|ZP_02659951.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243456|ref|ZP_02668388.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168820877|ref|ZP_02832877.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450712|ref|YP_002044099.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470477|ref|ZP_03076461.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734645|ref|YP_002113147.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264975|ref|ZP_03165049.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200387518|ref|ZP_03214130.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927332|ref|ZP_03218534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|20532170|sp|Q8ZRU2|MURC_SALTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082496|sp|A9MZM0|MURC_SALPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620430|sp|B4TXH9|MURC_SALSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620433|sp|B4TJ88|MURC_SALHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16418629|gb|AAL19093.1| L-alanine adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161361837|gb|ABX65605.1| hypothetical protein SPAB_00163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409016|gb|ACF69235.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456841|gb|EDX45680.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710147|gb|ACF89368.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197243230|gb|EDY25850.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291894|gb|EDY31244.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604616|gb|EDZ03161.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323997|gb|EDZ09192.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205331420|gb|EDZ18184.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335054|gb|EDZ21818.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337526|gb|EDZ24290.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342532|gb|EDZ29296.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261245362|emb|CBG23151.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991807|gb|ACY86692.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156757|emb|CBW16232.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911098|dbj|BAJ35072.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084372|emb|CBY94165.1| UDP-N-acetylmuramate-alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222297|gb|EFX47369.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615950|gb|EFY12867.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620734|gb|EFY17594.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623914|gb|EFY20751.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627362|gb|EFY24153.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630669|gb|EFY27433.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638111|gb|EFY34812.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640597|gb|EFY37248.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647738|gb|EFY44223.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648087|gb|EFY44554.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656881|gb|EFY53167.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657409|gb|EFY53681.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663728|gb|EFY59928.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666561|gb|EFY62739.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672280|gb|EFY68392.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676408|gb|EFY72479.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679499|gb|EFY75544.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686172|gb|EFY82156.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323128449|gb|ADX15879.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195016|gb|EFZ80202.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200075|gb|EFZ85162.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201104|gb|EFZ86173.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209501|gb|EFZ94434.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212247|gb|EFZ97071.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216552|gb|EGA01278.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219901|gb|EGA04379.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225819|gb|EGA10039.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228639|gb|EGA12768.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236747|gb|EGA20823.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239752|gb|EGA23799.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242200|gb|EGA26229.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249376|gb|EGA33292.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252291|gb|EGA36142.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256619|gb|EGA40349.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262988|gb|EGA46538.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265473|gb|EGA48969.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271739|gb|EGA55157.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332987082|gb|AEF06065.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 491

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 130/408 (31%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +      D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIADDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRN 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGNVG--KIARYLSE 477


>gi|301630395|ref|XP_002944307.1| PREDICTED: UDP-N-acetylmuramate--L-alanine ligase-like [Xenopus
           (Silurana) tropicalis]
          Length = 480

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 95/449 (21%), Positives = 163/449 (36%), Gaps = 61/449 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA  VV +T +      +       IPV     +L  L +L        
Sbjct: 56  GHD---AAQVQGADAVVTSTAVQGDNPEVLAARARKIPVVPRALMLAELMRLRQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               +AI G+ GKTTT  ++T  L+      T+   G  N+        AR+    ++ +
Sbjct: 108 ----VAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGRLNS----AGANARLGQG-EYIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +  L     P +AV+T I   H+  +      +  A  +    +   G  
Sbjct: 159 VEADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKRAFVDFLHRMPFYGAA 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---- 279
            L  D+     + A       + + S+G   +A  +    +  + +    VQ        
Sbjct: 214 ILCVDNPGVREILADVA----RPVTSYGFGADAQVRAVHVRADAGRMHFTVQRSNGVTLP 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALN 335
            +EV  +  G H   N L  + +   L       ++AL+ F     R +RY      A N
Sbjct: 270 DLEVELNLAGEHNVLNALAAIAVAVELGIPDAAVLRALAGFSGVGRRFQRYGDQPARAEN 329

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G    + E Y  +P  M A +   +       GRR  VL         ++    D  ++
Sbjct: 330 GGGHYQLIEDYGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVKI 385

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           L   ++   + V+ +G   +   D   L R++ V       + + +  L   I  +    
Sbjct: 386 LGQADVVLLTEVYAAGEAPIVAADGRSLARALRVAGHVEPIFIDDVAELPRAIVQNARAH 445

Query: 445 DVVVVKSSNSCGF--YRLINLLL-EEFPA 470
           DVV+   + S G    +++ LL   E PA
Sbjct: 446 DVVLCMGAGSIGAVPGKVLELLQNNELPA 474


>gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
 gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 154/427 (36%), Gaps = 44/427 (10%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKL 98
           A+    + GH      +   A  VVV      +   +A    L IPV    D L +L   
Sbjct: 52  ALGATVHIGH--AAEHLAADATCVVVSSAIRADNPELARAAELGIPVVHRSDALASLMD- 108

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKTTT  ML ++LS +               +   L     
Sbjct: 109 --------GLRPIAVAGTHGKTTTTSMLAVSLSELG--------LRPSYAIGGDLDAPGS 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +   G  E+ ++   E     H   P +A++  +   H +N++ ++EI  +     + + 
Sbjct: 153 NALHGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYESFETFVDRIA 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K GT+ +N D      L  +  A G++ + ++G +++AD ++        +S + V L G
Sbjct: 213 KGGTLVVNADHEGARELTWRVTASGVR-VVTYGDAEDADVRVLSVAPQGLKSEVTVLLDG 271

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + +       G H A N +  L     L    +    AL+ +   +   +R +       
Sbjct: 272 RQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAPALAAYTGVK---RRLQLKGEAAG 328

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---- 394
             +I +SY  +P  M A +  +   +      RI V+     +   +Q    ++ E    
Sbjct: 329 VQVI-DSYAHHPTEMTADLEAMRAAAGDA---RILVVFQ-PHLFSRTQELGKEMGEALAL 383

Query: 395 -----VLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                VL +Y      + G     + DA       V        +   +      GD+V+
Sbjct: 384 ADGSLVLEIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPEVVAGMAKAGDLVL 443

Query: 449 VKSSNSC 455
              +   
Sbjct: 444 TMGAGDV 450


>gi|192292413|ref|YP_001993018.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           TIE-1]
 gi|229620427|sp|B3QFN0|MURC_RHOPT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|192286162|gb|ACF02543.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           TIE-1]
          Length = 467

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 146/415 (35%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    D+ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVIN--GGIINAYGTNARLGGG-DWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTLV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G++  AD +L         S  +V  + +         ++     G
Sbjct: 228 GKIE---DRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAHEIADLKLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    Q      G+ IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARQ---STSGKVIAVVQPHRFSRLQSLFEEFCTCFNDADAVIVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H  V   +    L   +      GD VV   + + 
Sbjct: 398 EAPIEGIDRDHFVLGLRAHGHRDVVALQDSASLAGVVAGLAHSGDYVVCLGAGNI 452


>gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
 gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
          Length = 507

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 159/476 (33%), Gaps = 51/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +            V G++  S+ + P + + A+ G    G +F   A + GA 
Sbjct: 15  LGDLADRVAATPPEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
            ++ +   VA      +PV  V D   AL ++A        +  T+I +TG+ GKT+T  
Sbjct: 75  ALLTDPAGVALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIFELG 168
           ++   L +       IG+    +                L  M        VD  + E+ 
Sbjct: 135 LVESGLRAAGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVS 194

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     VR  +   T     HL   +   +  +AKA++F+G  +     LN+D
Sbjct: 195 SHALAMGR--VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHD 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D     L    H  G  T YS     +A +               +    G ++      
Sbjct: 251 DPALRPL----HKPGTVT-YSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVAL 305

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L+ + ++  +  D +TA + ++      G   R            + + Y 
Sbjct: 306 PGRHNVANALLAVALLVAVGVDPETAARGVAACGGVPG---RLELVSGDAPVRGVVD-YA 361

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               +++A +  L  ++   EGR I VLG     G+  +     +  V +      V ++
Sbjct: 362 HKANAIEAVLIALRDLT---EGRLICVLGA---GGDRDRGKRPVMGGVAA-RGADVVLVT 414

Query: 408 GFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +      A  R+              V                   GDVV V  
Sbjct: 415 DDNPRTEDPAAIRAEVLAGAYAAATPARVIEVPGRRAAIEEAVRMAEPGDVVAVLG 470


>gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
 gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
          Length = 495

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 160/480 (33%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSRS A  + F A+ G H DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  A  G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGEAIDGDIREIHGVPVIYLAQLPQRLSALAGRFYQQPAEKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT +++    + + +T A +G+  N +   L            +               
Sbjct: 121 TTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVATENTTGSAVDVQHVLHDLVGQGATLA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     ++   +AK  +F    + G   +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYEAAKWLLFSE-HQVGAAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD       AK     +    +            +          + +         E
Sbjct: 240 NADDEVGRRWLAKLPD-AVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFSSSWGDGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G     N+L+ L  +  L   +D  + + +   P  GR + +    +      +
Sbjct: 299 FDSRLMGAFNVSNLLLALATLLSLDYPLDALVSSATQLLPVTGRMEVF----SAPDKPTV 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++ A+        H +G+   + G   +  +  +     +AE  +     
Sbjct: 355 VVDYAHTPDALEKALEA---ARLHCKGQLWCLFGCGGDRDKGKRPLMGAIAEQFA----D 407

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   L                          D+V+V  K 
Sbjct: 408 VVVITDDNPRSEDPQAIVNDILTGLLDPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKG 467


>gi|145223576|ref|YP_001134254.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
 gi|189029001|sp|A4TBE7|MURC_MYCGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145216062|gb|ABP45466.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
          Length = 475

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 99/452 (21%), Positives = 168/452 (37%), Gaps = 63/452 (13%)

Query: 33  DSRSIAPQEAFFAIK--GPHY-DGHDFILHAVQK---GAGLVVVNT-------DMVASIG 79
           DSR +       A++  G     GHD    A+     G   VV            +    
Sbjct: 47  DSRGL------IALRARGAQVRIGHD--PSALDMLPGGPTAVVTTHAAIPKTNPELVEAR 98

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTY 137
              IPV     VL         ARL    T + +TG+ GKT+T  M+ +AL       ++
Sbjct: 99  RRGIPVILRPAVL---------ARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSF 149

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G            A        G   +  +   +   L +   P +AV+T I   HL
Sbjct: 150 AVGGDLGQ--------AGTNAHHGSGSTFVAEADESDGSLLEY--SPDVAVVTNIEADHL 199

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             +  +E   +   +  + ++  G + +  DD     L  ++ ALGI+ +  +G +   D
Sbjct: 200 DFYGTVENYTAVFDQFVDRIKPVGALVVCVDDPGAAALAERTAALGIR-VLRYGSAPGLD 258

Query: 258 FQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             L  W Q      + + V+ + +   +     G HMA N L  L   +   AD+D  + 
Sbjct: 259 ATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAATQAGADIDAVLD 318

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAV 374
            L+ F   +G  +R+      G   + D+ Y  +P  ++AAI+ L  ++    G R +AV
Sbjct: 319 GLAGF---DGVRRRFELVGTAGGVRVFDD-YAHHPTEVRAAITALRAVAEQTPGARTVAV 374

Query: 375 LGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                 +   +++F  + A          VL +Y      L G     + D +  S  V 
Sbjct: 375 F--QPHLYSRTETFATEFAASLSTADEVFVLDVYAAREQPLPGVSGATIADGV--SAPVT 430

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           Y      +   + + +  GDVVV   +     
Sbjct: 431 YIADFSAVAARVAAVVSAGDVVVTMGAGDVTM 462


>gi|307544553|ref|YP_003897032.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
 gi|307216577|emb|CBV41847.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
          Length = 507

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 153/426 (35%), Gaps = 50/426 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH        + A +VVV+T        +       IPV    ++L  L +         
Sbjct: 92  GH---AEENARDADVVVVSTAVDETNPEIRWAQQHRIPVVRRAEMLAELMRFR------- 141

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  +    L                IG  LT A +   +  G + 
Sbjct: 142 --HGIAVAGTHGKTTTTSLTATLLGEGGLDP------TFVIGGRLTSAGVNARLGEGDYL 193

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +  +   +  FL   ++P +A++T I   H++ +    E +     E    L   G   L
Sbjct: 194 VAEADESDASFL--HLQPMVAIVTNIDADHMATYGGDFERLKGTFIEFLHNLPFYGLAVL 251

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEV 283
             DD+    L  + +    +   ++G S++AD++L  + Q   +     +       +EV
Sbjct: 252 CIDDANVRGLIERVN----RQFVTYGFSEDADYRLENFVQHGGEVSFIARRPDGLAPLEV 307

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFTL 341
                G H A N +  + + S    +    ++ L+ F     R +   +  +       +
Sbjct: 308 RLAMPGEHNALNAMAAIAVASDAGVEDAAILRGLASFAGVGRRFQVHGHFASPQGEGEVM 367

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---- 397
           + + Y  +P  ++  I  + +  P    RR+ +L         ++    D   VL+    
Sbjct: 368 LVDDYGHHPREVEMVIKAVREGWPE---RRLVMLYQ-PHRYSRTRDLFEDFVRVLAGVDT 423

Query: 398 -----LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVK 450
                +Y+     L G     L  ++ +   V   + +    L   +   L  GD+++ +
Sbjct: 424 LLLLDVYSAGESPLPGADGRTLAGSIRQRGEVDPIFVQDKSELPELLAKVLRPGDILITQ 483

Query: 451 SSNSCG 456
            +   G
Sbjct: 484 GAGDVG 489


>gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens
           QYMF]
          Length = 460

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 149/413 (36%), Gaps = 42/413 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +         L IP+    ++LG + K    A        IA+ GS GKTTT  +
Sbjct: 78  AAVKADNPERIRAEELGIPLADRAEMLGQIMKKYEKA--------IAVAGSHGKTTTTSL 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ +           + +  I V   L  +  ++  G  +  ++   E         P 
Sbjct: 130 ISLLMEY--------SNLDPTILVGGELDEIGGNIKIGQSQHFITEACEYVESFLKFYPF 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   HL  F  IE I SA  +  + + K G +  +YDD+    +          
Sbjct: 182 IGIILNIDEDHLDYFKDIEHIKSAFKKFAQRIPKEGFLIASYDDAHVREISRDLDC---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            + ++G    + F     +   E     +V  +GK++     +  G H   N L  +   
Sbjct: 238 HVITYGIKTKSQFMAHNIEFSFEGLPSFDVSFEGKTIGSFSLNIPGLHNVYNSLAAIATT 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L  D     K ++ F   +G  +R+          +ID+ Y  +P  ++A +    + 
Sbjct: 298 YVLGVDPVAISKHITRF---KGIHRRFDLLGEVKGAKVIDD-YAHHPVEIRATLEAAKKY 353

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+L D  +      + H+ + ++ +        +   +   L
Sbjct: 354 PHKKIWCVFQPHTYSRTQALLKDFAK--SFYLADHVIITDIYAAREKDEGIV---NSQGL 408

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + + +     Y    + +  ++   +  GD+V+   +       +  +LL E
Sbjct: 409 VNLIVQEHPAQYIGGFEEISRYLYDHIEAGDIVLTMGAGDVYL--IAQMLLAE 459


>gi|315645748|ref|ZP_07898872.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
 gi|315279226|gb|EFU42536.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
          Length = 458

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 157/441 (35%), Gaps = 55/441 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTD------MVASIGSLSIPVFGVDDVLGAL 95
            A KG       +I H  ++  GA LVV +T              L+IPV         L
Sbjct: 45  LAAKGAKI----YIGHTAEQVQGADLVVYSTALSKDNVERVEAEKLNIPV---------L 91

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + ARL ++   +A+ G+ GKTTT  M+ + +         I      I    T A+
Sbjct: 92  HRAQMLARLLNERKGVAVAGAHGKTTTSSMIALVMEECGVDPTFI--IGGEIMNVGTNAK 149

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
                +  + E   S    +++      P + V+  I   HL N+      + +A  +  
Sbjct: 150 AGEG-EHVVAEADESDGSFLQY-----HPWLGVVLNIEADHLENYEGDFNRLKAAYVQFL 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             ++  GT  +  DD   + +           + ++G   +A++          Q    +
Sbjct: 204 SQIKPDGTAVVCADDHNIQAILPDLKC----NVTTYGIHSDAEYTATNLVLGDRQVSFMM 259

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              G  +  V     G H   N + T+          +  ++A+  F    G  +R++  
Sbjct: 260 LHNGMELGTVELSVPGKHNVYNAMATVICCLKGGISFEAIVEAIVKF---NGAKRRFQVL 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ--------ISPHGEGRRIAVLGDMCEMGELS 385
                  +ID+ Y  +P  ++A IS              P    R   +L         S
Sbjct: 317 GEADGILVIDD-YAHHPTEIEATISAAKATGKRIIAVFQPQRYSRTFFLLDAFSR--AFS 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD 443
           ++  + + ++ S      +   G     L + + ++ +    Y  T + +   ++  + +
Sbjct: 374 EADEVIITDIYSPAGEKQI--EGISSGKLVELIVQNSNAGARYLPTKEDVLNDLKDRVKE 431

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           GD+V+   +     +++   L
Sbjct: 432 GDLVLTMGAGDI--WKVGAAL 450


>gi|2177094|gb|AAB60787.1| UDP-MurNAc:L-alanine ligase [Escherichia coli]
          Length = 491

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSDTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 522

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/494 (18%), Positives = 164/494 (33%), Gaps = 69/494 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                L + I    +    QG     V G ++ ++ + P + F A+ G    G DF   A
Sbjct: 1   MDTEQLAELIGARILRAPGQGPSGRPVTGATLRAQHVRPGDLFAALPGTRVHGADFAATA 60

Query: 61  VQKGAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATI 110
           +  GA  V+ +              + +  + +   DD   AL      +      +  I
Sbjct: 61  LDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQLRI 120

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPV 158
           + +TG+ GKTTT  +L  AL++   T   +G+    I              P   A + V
Sbjct: 121 LGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAV 180

Query: 159 DVDFGI----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            V+ G+     E+    L   R      R  +   T ++  HL     +++   AKA +F
Sbjct: 181 MVEHGVTHVPMEVSSHALALGR--VSGTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLF 238

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWME 273
           +G  +     +  D  +   L             +   + +A +     +          
Sbjct: 239 DGRSEHE--VVCTDTDWGRKLVKPG-------TITVSTTGDASWTATDVEAFPTGEQEFT 289

Query: 274 VQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               G  S+ +     G     N L+ +GI+                    +  G+  R 
Sbjct: 290 AHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAI---ERGLAEVDVPGRMERV 346

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           AL Q F  ++D  Y+  P ++ A +      +   EGR I VLG     G+   +    +
Sbjct: 347 ALGQDFTAVVD--YSHKPGAVSAVLDAARAQA---EGRVIVVLGC---GGDRDVAKRPLM 398

Query: 393 AEVLSLYNISHVWL-----------SGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQS 439
            E  +  +   +                 +LA  +A+P +      E            +
Sbjct: 399 GEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDRREAIAEAVA 458

Query: 440 SLVDGDVVVV--KS 451
               GD+VVV  K 
Sbjct: 459 RASSGDIVVVAGKG 472


>gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
 gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
          Length = 517

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 38  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 97

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 98  RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 157

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 158 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 215

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 271

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 272 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 332 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 386

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 387 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 438

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 439 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 486


>gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 210]
 gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis CDC1551A]
          Length = 521

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 42  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 101

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 161

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 162 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 219

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 220 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 275

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 276 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 335

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 336 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 390

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 391 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 442

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 443 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 490


>gi|291533194|emb|CBL06307.1| UDP-N-acetylmuramate--L-alanine ligase [Megamonas hypermegale
           ART12/1]
          Length = 393

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 132/341 (38%), Gaps = 34/341 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVP 150
           L   ++  + A L + A  IA+ G+ GKTTT  M+++ L   K      IG + +++   
Sbjct: 72  LKLFHRSDILAYLLNDAKGIAVAGAHGKTTTSSMISVVLEHAKVDPTILIGGFVDYLKGN 131

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L +     D+ + E   S    ++F      P IAVIT I   H+ ++  +E I  A 
Sbjct: 132 AKLGK----SDYLVAEADESDGSFLKF-----YPKIAVITNIEDDHMDHYGSMENIIKAF 182

Query: 211 AEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +  + L+K TG   L +D+     +  K      +   S+    +AD+  +  K     
Sbjct: 183 IQFVQNLDKETGLAVLCFDNENIRNIADKV----DRKYISYALDHDADYMAKDIKIDGPH 238

Query: 270 SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +   V  +G+ + +V  +  G H   N L T+ +   +   ++   +   VF   +   +
Sbjct: 239 TSFTVIYKGEVLGDVALNIPGKHNVLNALATIAVCHHMGLSIEEIAEGFKVFSGTK---R 295

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R++         ++D+ Y  +P  ++  I    Q +P     +  ++         +Q  
Sbjct: 296 RFQTKFRNENVWIVDD-YAHHPTEIQTTIKAAKQTNP-----KRLIVAFQPHRYSRTQLL 349

Query: 389 HIDLAE---------VLSLYNISHVWLSGFHVLALKDALPR 420
             +            +  +Y  S   + G     + D +  
Sbjct: 350 QKEFGSCFVGADVLVLTDIYAASEDPIEGISGKTIVDEVKN 390


>gi|254485599|ref|ZP_05098804.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
 gi|214042468|gb|EEB83106.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
          Length = 471

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 143/409 (34%), Gaps = 47/409 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA ++V+++ +      L       +P+    ++L  L +L            IA+ G+ 
Sbjct: 70  GAEVIVISSAIKPGNPELDAARFAGLPIVRRAEMLAELMRLKSN---------IAVAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L          G  +  +     +     +   G  E  +    E   
Sbjct: 121 GKTTTTTMVAELL--------VKGGIDPTVVNGGIIHAYGSNARMGQGEWMVVEADESDG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++   + +     +    +   G      D    + L  
Sbjct: 173 TFNRLPATIAIVTNIDPEHMEHWGNFDTLRQGFLDFVSNIPFYGLAICCIDHPEVQALVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQ 294
           K   +  + + ++G +  AD +       +  +  ++Q Q + +   +      G H   
Sbjct: 233 K---ITDRRVMTYGFNAQADVRAVNLHYKAGVAHFDIQFQSEDITIKDCSLPMPGDHNVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    +    AL+ F       +R+         ++ID+ Y  +P  + 
Sbjct: 290 NALAAVAVSRHLGIKGEEIRAALAGFGGVN---RRFTKVGEVDGVSIIDD-YGHHPVEIT 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWL 406
           A +    Q +   EGR IAV         LS  F          D+  +  +Y      +
Sbjct: 346 AVLKAARQAT---EGRVIAV-HQPHRYSRLSHHFDEFCACFNDADVVGIAEVYAAGEDPI 401

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            G     L   L R  H H    ++ + L   ++     GD+VV   + 
Sbjct: 402 PGASRDDLVAGLIRHGHRHARAVQSEEDLARLVKEQAGPGDMVVCLGAG 450


>gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 517

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 38  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 97

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 98  RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 157

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 158 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 215

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 271

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 272 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 332 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 386

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 387 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 438

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 439 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 486


>gi|163741570|ref|ZP_02148961.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
 gi|161385304|gb|EDQ09682.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
          Length = 465

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 143/419 (34%), Gaps = 49/419 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+  A +    A +VV+++ +      L       +PV    ++L  L +L         
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   +          G ++  I     +     +   G  E 
Sbjct: 114 ---IAIAGTHGKTTTTTMMAELM--------VAGHFDPTIVNGGIIHAYGSNARMGQGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   + +     +    +   G      
Sbjct: 163 MVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGDFDTLRDGFYDFVSNIPFYGVAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           D    + L  +   +  + + ++G +  AD +       +  +  ++ LQ +        
Sbjct: 223 DHPEVQALVGR---ITDRRVVTYGFNAQADVRATNLTYKAGVAHFDIHLQAEDRVIEGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L        +AL+ F       +R+         T+ID+
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVN---RRFTKVGEVDGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVL 396
            Y  +P  + A +    Q     +GR IAV         LS  F          D+  + 
Sbjct: 337 -YGHHPVEITAVLKAARQA---CDGRVIAV-HQPHRYSRLSSLFEDFCACFNEADVVAIA 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSN 453
            ++      + G     L   L R  H H    +D   L   ++     GD+VV   + 
Sbjct: 392 EVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMVVCLGAG 450


>gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
 gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
          Length = 482

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/472 (16%), Positives = 159/472 (33%), Gaps = 40/472 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T H+LL A+ G S   V    ++ +S+DSR +  Q  + A +G  Y   DF    +  
Sbjct: 1   MKTTHELLTAL-GLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEIN- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                +       +    +I V  + + + A+  L        K  I  +TG+ GK++  
Sbjct: 59  --CAAIFYEPPYQNPPPHAITVERLSEKVSAIADLF-YDHPAQKLWITGVTGTDGKSSLV 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTH 180
             +  A  +       IG  N +   P +      +        F    +    +   +H
Sbjct: 116 HFIAQATGAAM--LGTIGYGNLNALQPASHTTPDAITTQQQLAHFVAQGNQAVAMEISSH 173

Query: 181 LVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +  H        +AV T ++  HL   + +E+   AKA++F          +N DD   
Sbjct: 174 ALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFAF--PIKHAVINIDDPHG 231

Query: 233 ELLKAKSHALGIKTIYSF---GKSKNA---DFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             L ++        I++    G    A   +     +          + +  +++ V  H
Sbjct: 232 RRLISEHRINSSACIWAVSAKGAHNAAAHHNVCAHDYCLHQNGVTFTLAIDDETIAVETH 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N+L     ++     +    + L+  H   GR +    +       L    Y
Sbjct: 292 LLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLS----NQALAIVDY 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHV 404
                ++++   VL+ I PH  G+   + G         ++     AE  +   I     
Sbjct: 348 AHTAGAIES---VLTGIRPHISGKLWLIFGCGGNRDRGKRALMAQAAERFADAVIVTDDN 404

Query: 405 WLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +      + D          +H  +  +    +  + L  GD V++  K 
Sbjct: 405 PRTEDPAAIIADVMQGFEYPEKIHVIQPREQAIHYALAQLHAGDAVLITGKG 456


>gi|157147485|ref|YP_001454804.1| UDP-N-acetylmuramate--L-alanine ligase [Citrobacter koseri ATCC
           BAA-895]
 gi|166222972|sp|A8ALK5|MURC_CITK8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157084690|gb|ABV14368.1| hypothetical protein CKO_03284 [Citrobacter koseri ATCC BAA-895]
          Length = 491

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 133/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S +
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++ +++Q   Q    +  Q K +M+V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEEYQQVGPQGHFTLLRQDKPAMQVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
             + V          ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 -LVMVF--QPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVAQMLAPVLTGNDLILVQGAGNIG--KIARTLAE 477


>gi|39936591|ref|NP_948867.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           CGA009]
 gi|48428302|sp|P61682|MURC_RHOPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39650447|emb|CAE28970.1| UDP-N-acetylmuramate-alanine ligase [Rhodopseudomonas palustris
           CGA009]
          Length = 467

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 146/415 (35%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA ++VV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +       I      I    T AR+    D+ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVIN--GGIINAYGTNARLGGG-DWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTLV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G++  AD +L         S  +V  + +         ++     G
Sbjct: 228 GKIE---DRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAHEIADLKLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    Q      G+ IAV+       +  L + F       D   V  +Y   
Sbjct: 341 PVEIAAVLKAARQ---STAGKVIAVVQPHRFSRLQSLFEEFCTCFNDADAVIVADVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H  V   +    L   +      GD VV   + + 
Sbjct: 398 EAPIEGIDRDHFVLGLRAHGHRDVVALQDSASLAGVVAGLAHSGDYVVCLGAGNI 452


>gi|303239793|ref|ZP_07326317.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
 gi|302592730|gb|EFL62454.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
          Length = 469

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 137/378 (36%), Gaps = 38/378 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           ++     +AI+G+ GKTTT  M+++ +           + +  I +   L  +  +   G
Sbjct: 109 MKKYPFSLAISGTHGKTTTTSMVSMIM--------LESNLDPTIHIGGELDAIGGNTRIG 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  ++   E         P +A++  I   HL  F  I  I  A  +    + K G I
Sbjct: 161 GNKYFITEACEYVESFLKFYPTLAIVLNIEEDHLDYFKDINHIKQAFLKFMNLVPKDGYI 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQ--SWMEVQLQGKS 280
               DD     + ++        + ++G +  NA +  R  +       S+  ++   K 
Sbjct: 221 IACADDENVSSILSQIST----NVVTYGINSTNATWTARNIEFDDSGCASYDLIKSGQKV 276

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G H   N +        L  D+      L  F    G  +R+          
Sbjct: 277 AAIKLRVPGIHNVSNSIAAAAACYTLGCDIKDIEHGLEAFT---GTHRRFEVKGVVENIK 333

Query: 341 LIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           ++D+ Y  +P+ +KA +                PH   R   +L +  E    S +  + 
Sbjct: 334 VVDD-YAHHPSEIKATLKAAKSTNHTKIWCVFQPHTYTRTKLLLDEFSE--AFSDADEVI 390

Query: 392 LAEVLSLYNISHVWLSGF-HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++++ S   I     +G  H   L   +  +S +  Y    + +  +++ +   GD+V+ 
Sbjct: 391 ISDIYSAREID----TGEIHSNVLSQRINAKSNNSIYKPDFNAIVEYLKENASSGDLVIT 446

Query: 450 KSSNSCGFYRLINLLLEE 467
             +     Y++  + L+E
Sbjct: 447 MGAGDV--YKVGEMFLKE 462


>gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
 gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
          Length = 481

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 99/496 (19%), Positives = 174/496 (35%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFKK-EYLLSAISQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYHILSQRYPT-ALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQNGRTHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVVI 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +  DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EHQEHDFYGSQSSNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         +A+ + +   I   V      +       +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++N + E +P
Sbjct: 459 C---YQIVNGVKESYP 471


>gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine ligase [Janthinobacterium sp.
           Marseille]
 gi|166224696|sp|A6T2F7|MURC_JANMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151280263|gb|ABR88673.1| UDP-N-acetylmuramate--alanine ligase [Janthinobacterium sp.
           Marseille]
          Length = 465

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 141/408 (34%), Gaps = 44/408 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IP+     +L  L +L            IAI G+ GKTTT  ++
Sbjct: 73  AVKEDNPEVIAAREKHIPIVPRAVMLAELMRLRRG---------IAIAGTHGKTTTTSLV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+         G  +    +   L     +   G  E  ++   E       + P I
Sbjct: 124 ASVLAE--------GGLDPTFVIGGLLNSAGANAKLGTGEFIVAEADESDASFLNLSPVI 175

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            VIT I   H+  +    E++  A  E  + L   G   L  DD+    +  +   L   
Sbjct: 176 EVITNIDADHMETYGHDFEKLKQAFIEFTQRLPFYGVAVLCIDDATVREIMPRISKL--- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G  ++A  +    K         V  +G   M+V  +  G H  QN    + I  
Sbjct: 233 -ITTYGFHEDAQVRAIDAKAIDGHMHFTVLQEGYAPMQVSLNQPGMHNVQNACAAIAIAR 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASMKAAIS 358
            L        KAL+ F+    R  RY                 + + Y  +P    A I 
Sbjct: 292 ELGVADHATQKALTEFNGVGRRFTRYGEISLPAVNDKPAGTFALVDDYGHHPVETAATI- 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALK 415
             +       GRR  VL         ++    D  +VLS  +   ++ V+ +G   +   
Sbjct: 351 --AAARGAYPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSTTDMLVLAEVYAAGEQPIVAA 407

Query: 416 DA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           D   L  ++ V       + E +  +   I + + DGDVV+   + S 
Sbjct: 408 DGRTLAHALRVAGKVDPVFVEKIADMPATIMNIIKDGDVVITMGAGSI 455


>gi|241765423|ref|ZP_04763393.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364828|gb|EER59801.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
          Length = 477

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 150/420 (35%), Gaps = 46/420 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +     IPV     +L  L +L            IAI G+ GKTTT  ++
Sbjct: 73  AVTGDNPEVLAAREKKIPVVPRALMLAELMRLKQG---------IAIAGTHGKTTTTSLV 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T  L+         IG   N  G    L       D+ + E   S    +  L     P 
Sbjct: 124 TSVLAEAGLDPTFVIGGRLNSAGANAKLG----SGDYIVVEADESDASFLNLL-----PV 174

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H+  +      +  A  +    +   GT  L  D      +         
Sbjct: 175 MAVVTNIDADHMETYGHDFGRLKKAFVDFLHRMPFYGTAILCVDSPAVRDILPSVTC--- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMTL 300
             + S+G S++A  +    +  + Q    VQ +       MEVV +  G H   N L  +
Sbjct: 232 -PVTSYGFSEDAQVRAINVRAEAGQMRFTVQRRNGVTLPDMEVVLNLAGEHNVLNALSAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISV 359
            +   L    +  ++AL+ F     R +RY       G    + + Y  +P  M A +  
Sbjct: 291 AVAVELNIPDEAVLRALAGFKGVGRRFQRYGDLPAKGGGHFTVIDDYGHHPVEMAATL-- 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD 416
            +       GRR  VL         ++    D  +V+   +    + V+ +G   +   D
Sbjct: 349 -AAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVKVIGSADAVLLTEVYAAGEAPVVAAD 406

Query: 417 A--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
              L R++ V       + + +  +   I  +  DGDVV+   + S G    +++ +L  
Sbjct: 407 GRSLARALRVAGRVEPVFVDNVADMVQVIADNAKDGDVVMCMGAGSIGAVPGKVVEMLQN 466


>gi|259907418|ref|YP_002647774.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963040|emb|CAX54523.1| UDP-N-acetylmuramate-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477251|emb|CAY73164.1| L-alanine adding enzyme,UDP-N-acetyl-muramate:alanine ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 491

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 138/412 (33%), Gaps = 45/412 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  M++   + 
Sbjct: 93  PEVVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +              + I E   S    +      ++P +A++T I
Sbjct: 144 GGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+       E +          L   G   L  DD+    L  +      + I ++G
Sbjct: 196 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPRV----GRQITTYG 251

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  + Q   Q    +    K + +V  +  G H A N    + + +    D 
Sbjct: 252 FSEDADVRVDNYHQQGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAVAVATEENIDD 311

Query: 311 DTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  + AL  F     R           +       ++ + Y  +P  +   I       P
Sbjct: 312 EDILNALESFQGTGRRFDFLGEYPLALSNGSAGTAMLVDDYGHHPTEVDVTIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--ALPR 420
                 + +          ++  + D A VLS  ++     V+ +G   +A  D  AL R
Sbjct: 372 DKN--LVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIAGADSRALCR 427

Query: 421 SIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +I              D +   +   L   D+++V+ + + G  R+   L E
Sbjct: 428 TIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGNVG--RIARTLAE 477


>gi|254419677|ref|ZP_05033401.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
 gi|196185854|gb|EDX80830.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
          Length = 470

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 157/426 (36%), Gaps = 52/426 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           + GHD     V +G   VV +T        + +     IP+    ++L  L +L      
Sbjct: 61  FIGHD--AAHVSEGVSAVVYSTAVKADNPEMKAARERRIPLVRRAEMLAELMRLQF---- 114

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IA+ G+ GKTTT  M+   L +           N  I           D D+ +
Sbjct: 115 -----SIAVGGTHGKTTTTSMVAALLDAAGLD---PTVVNGGIINAYGTNAKVGDGDWIV 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S    +R     ++  +A++T I P HL ++   + +  A  +  E +   G   
Sbjct: 167 VEADESDGSFLR-----LKSTVAIVTNIDPEHLDHYGDFDAVRKAFVDFVENIPFYGFAA 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---- 280
           +  D    + L A   ++  + + ++G +  A  +    +   + +  +V +Q       
Sbjct: 222 VCLDHPEVQKLVA---SIDNRRLVTYGINPQAMVRADNCQMGPDGARFDVVIQNGETYRI 278

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G+H   N L  + +   L    +   + L+ F   +   +R+          
Sbjct: 279 ENLHLPMAGWHNVSNALAAIAVARELDVSDEAIREGLAGFGGVK---RRFTTTGVVNGVR 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSF-HID 391
           ++D+ Y  +P  + A +    Q++   EGR IAV        L D+  M E S +F   D
Sbjct: 336 IVDD-YGHHPVEIVAVLKAARQVT---EGRVIAVVQPHRYTRLRDL--MNEFSTAFSDAD 389

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
              V  +Y      + G    AL D + R  H H    E    L   I+     GDVVV+
Sbjct: 390 SVIVADVYPAGEPPIEGVDKHALTDGIRRYGHRHVQALENAAVLPRLIKEEARPGDVVVL 449

Query: 450 KSSNSC 455
             +   
Sbjct: 450 LGAGDI 455


>gi|91205778|ref|YP_538133.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii RML369-C]
 gi|109892734|sp|Q1RHX0|MURC_RICBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91069322|gb|ABE05044.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia bellii RML369-C]
          Length = 478

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 141/416 (33%), Gaps = 44/416 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   V       IP+    ++L  L +L            +A++GS GKTTT  ++    
Sbjct: 85  NNPEVKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLF 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +       I   N  I    +        ++ I E   S    I      +   IA+IT
Sbjct: 136 EAAGLHPTVI---NGGIINNRSTNAYLGSSNYLIAEADESDATFIS-----IPSTIAIIT 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  +   + + +A       L   G      D      L    + +  + + ++
Sbjct: 188 NIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVREL---VNNITERKVITY 244

Query: 251 GK-SKNADFQLRKWKQCSEQSWMEVQL-----QGKSM--EVVHHGIGYHMAQNMLMTLGI 302
           G  S +A             S  +V++      G ++  ++     G H   N L  + +
Sbjct: 245 GIDSDDAHITAFNISTDITSSTFDVKISLPNVSGVTIIEKITIPTPGRHNILNSLAAISV 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +       + F   +   +R+         ++ID+ Y  +P  +KA +S    
Sbjct: 305 GVELDFGIKAIKNGFNSFKGVK---RRFTKVAEYNQASVIDD-YAHHPEEIKATLSTAKN 360

Query: 363 ISPHGEGRRIAVL-----GDMCEMGELSQSFH--IDLAEVLSLYNISHVWLSGFHVLALK 415
           I+    G+ IA+        M  + +         DL  +  +Y      + G    +L 
Sbjct: 361 IANKQHGKVIAIFQPHRYSRMQHLFDDFMRCFDDADLLYITDVYAAGESPIEGISGQSLI 420

Query: 416 D---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           D    L      ++   +D     I +    GD++++  + +       N L ++F
Sbjct: 421 DNIIKLKYHNQANFLAKLDDSLEVIMNKASPGDMIIMMGAGNI--SNFANELPQKF 474


>gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
 gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
          Length = 471

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 150/388 (38%), Gaps = 34/388 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F AIKG   DG  +I  A+ +G   VV      A+ G +     +PV 
Sbjct: 2   TLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPVV 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            ++D+   L+ LA A       K  ++ +TG+ GKTTT +++      + +T A +G+  
Sbjct: 62  YLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTVG 121

Query: 145 NHIGVPL--TLARMPVDVDFGI------------FELGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +  +       VD  +              + +S  G ++     +    AV T
Sbjct: 122 NGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKT 246
            ++  HL     +E   +AK  +F    +T    +N DD     + + L         + 
Sbjct: 182 NLSRDHLDYHGDMESYEAAKWLLFS-THQTKAQIINADDDVGLKWLQRLPQACAVSMEQR 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I    +      Q    +     + ++      +  +    +G     N+L+ +  +  +
Sbjct: 241 IPEQWQGPW--LQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATLLTM 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  ++A S   P  GR + +  A N+    +    Y   P +++ A   L+    H
Sbjct: 299 DYSLEQLLEASSSLSPVCGRMEVF-SAPNKPTVVV---DYAHTPDALEKA---LAAARLH 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G+   V G   +  +  +      AE
Sbjct: 352 CKGQLWCVFGCGGDRDKGKRPLMGAAAE 379


>gi|332686694|ref|YP_004456468.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
 gi|332370703|dbj|BAK21659.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
          Length = 446

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 133/370 (35%), Gaps = 52/370 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TG+ GKT T  +L   LS +K T   IG    H            D +F  FE  
Sbjct: 108 TSIAVTGAHGKTGTTGLLAHVLSGVKPTSYLIGDGTGHG---------NPDAEFFAFEAC 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 + +      P  A++T I   H   ++ IE++ SA   +   ++K   IF   D
Sbjct: 159 EYQRHFLSY-----SPDYAIMTNIDFDHPDYYTSIEDVYSAFQSLANQVKKG--IFAYGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHG 287
           D +   L A         IY +G ++N D Q +  ++ ++ S  +V  +GK +       
Sbjct: 212 DKYLRKLNADV------PIYYYGVNENDDIQAKNIQRTTKGSSFDVYYEGKFIGHFDLPA 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +        D+D     +  F   + R    +         +I + Y 
Sbjct: 266 YGQHNILNALGVIAAAYFEELDMDEVAIEMKTFKGVKRRFTEKQI-----GDMIIIDDYA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  + A I    Q  P+ E   +AV          + +   +  + L L    +V+L 
Sbjct: 321 HHPTEISATIDGARQKYPNKE--IVAVF--QPHTFTRTIALLDEFGKALDL--ADYVYLC 374

Query: 408 G-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC- 455
                         +  L + + +   V   E M  L  +  S      V++   +    
Sbjct: 375 DIFGSARETQGNVKIEDLGNKIKKGGQVIKEEDMSELLDYTDS------VIMFMGAGDVQ 428

Query: 456 GFYRLINLLL 465
            F +    LL
Sbjct: 429 KFEQAYETLL 438


>gi|146276746|ref|YP_001166905.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166224720|sp|A4WQD6|MURC_RHOS5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145554987|gb|ABP69600.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 139/413 (33%), Gaps = 52/413 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV    ++L  L +L            IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARRRGLPVVRRAEMLAELMRLRSN---------IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L          G ++  +     +     +   G  E  +    E  
Sbjct: 120 HGKTTTTTMVATLLDK--------GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADESD 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D    + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFYDFVTNIPFYGLAVCCTDHPEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGYH 291
            +   +  + I +FG +  AD +    +  +  +  +V LQG+              G H
Sbjct: 232 GR---VTDRRIVTFGFNAQADVRAINLRYENGTAHFDVALQGEGEGHLIEGMTLPMPGDH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L    D   +AL+ F       +R+      G  T+ID+ Y  +P 
Sbjct: 289 NVSNALAAVAVARHLGMKKDEIREALAAFGGVN---RRFTKVGEVGGVTIIDD-YGHHPV 344

Query: 352 SMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + A +    Q           PH   R   +  D C     +     D+  +  +Y   
Sbjct: 345 EIAAVLRAARQAVKGRVIAVHQPHRYSRLHTLFDDFCTCFNEA-----DVVAIAEVYAAG 399

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKSSN 453
              ++G     L   L    H H    +  D L   ++     GD+VV   + 
Sbjct: 400 ETPIAGASRDDLVAGLIAHGHRHARAILCEDDLERLVREQARPGDMVVCLGAG 452


>gi|157828210|ref|YP_001494452.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932913|ref|YP_001649702.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           Iowa]
 gi|166224724|sp|A8GRB9|MURC_RICRS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029027|sp|B0BWS0|MURC_RICRO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157800691|gb|ABV75944.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908000|gb|ABY72296.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia rickettsii str.
           Iowa]
          Length = 485

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 136/397 (34%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    D+L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRADMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I    +        ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L  +   +  + I ++G  S++
Sbjct: 194 LDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDE---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNNASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  L   F       D+  +  +Y      + G    +L D + + 
Sbjct: 367 GKVIAIFQPHRYSRMQYLFDDFMLCFADADILYITDIYAAGENPIEGITGRSLVDKITKR 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAELDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 493

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 101/485 (20%), Positives = 167/485 (34%), Gaps = 59/485 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQA  G  +    +  V  +  DSR++ P   F  + G H DGH + + A   G
Sbjct: 1   MNLCELLQATDGVLLQGDARADVQTLCYDSRAVTPGALFVCLPGLHTDGHAYAVRAAAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  +V    +     +  +PV  V     AL +L   +      + T+I ITG+ GKTTT
Sbjct: 61  AVGIVCERPIPGLPEA--LPVIQVTHSRRALAQLAIRLYGEPARQLTMIGITGTKGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELG 168
             ++   L++  +    IG+                        L R  VD       + 
Sbjct: 119 AHLVAAVLTAAGRKVGLIGTNGVRWPGYRHPLDHTTPESSDLQQLLRRMVDAGCDTCVME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S LG        +   I + T ++P H+     +   E  + K+ +F          +N
Sbjct: 179 VSSLGLKMDRVTGIEYDIGIFTNLSPDHIGPGEHASFAEYRAWKSVLFRRCR---VGIVN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWMEVQL-----QGKS 280
            DD   E +  +        + ++G  + AD++    +        + V       +G S
Sbjct: 236 ADDPQTEAILTQHTC----RVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTAAGPEGGS 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E      G     N L  +    IL    DTA++        EG   R         FT
Sbjct: 292 REYQLAMPGRFSIYNALAAIAAAGILQLP-DTAVQTGLRTAVVEG---RVEPVPIHAPFT 347

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y  N A+ +  ++ L    P    R I V G     G  S+     + E  +   
Sbjct: 348 VVLD-YAHNEAAAENLLTTLRAYRPT---RLIVVFGC---GGGRSRVRRFGMGEACARLA 400

Query: 401 ISHVWLSG-FHVLALKDAL-----------PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +          L D L           P +  V  S+    L+  +      GD+V 
Sbjct: 401 DFCIVTEDNSRGEPLADILADIRTGLRRGNPDTPFVEISDRRQALYDAL-DMARPGDIVA 459

Query: 449 V--KS 451
           V  K 
Sbjct: 460 VIGKG 464


>gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
 gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
          Length = 464

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 152/439 (34%), Gaps = 43/439 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVF 86
           DSR     +A  A     + GH      +   A  VVV      +   +A    L IPV 
Sbjct: 40  DSRDSETAQALRAHGATVHIGH--AAGHLATDATCVVVSSAIRADNPELARAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L ++               IA+ G+ GKTTT  ML +ALS++          +  
Sbjct: 98  HRSDALASVMD---------GLRPIAVAGTHGKTTTTSMLAVALSALG--------LDPS 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L     +   G  ++ ++   E     H   P +A+I      H +N++ ++EI
Sbjct: 141 YAIGGDLDAPGSNAHHGEGDVFVAEADESDRSFHKYTPQVAIILNAELDHHANYASMDEI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +       +   GT+ + +       +  +        + ++G+ + AD ++RK    
Sbjct: 201 YESFETFVGKIVPGGTLVVAHGQEGAAEIAHRVSGNPDLIVRTYGEDETADVRIRKITPR 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S + V + G+ +       G H A N +  L     L    D    AL  +   +  
Sbjct: 261 GLTSEVAVVMDGREIVFTVSVPGRHYAHNAVAALTAGVALGIPADDLAAALGKYTGVK-- 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R +         +I +SY  +P  M A +  +   +      RI V+     +   +Q
Sbjct: 319 -RRLQLKGEAAGVQVI-DSYAHHPTEMTADLEAIRSAAGDS---RILVVFQ-PHLFSRTQ 372

Query: 387 SFHIDLAEVLSLYNISHV---------WLSGFHVL-ALKDALPRSIHVHYSETMDGLFLF 436
               ++ + L+L + S V          + G      +  A      V        +   
Sbjct: 373 ELGKEMGQALALADASVVLDIYPAREDPIPGVTSELIISAARTAGADVAAEHDKTAVADV 432

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           I      GD+V+   +   
Sbjct: 433 IAGMAKPGDLVLTMGAGDV 451


>gi|218547548|ref|YP_002381339.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|226711869|sp|B7LWF7|MURC_ESCF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218355089|emb|CAQ87696.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|325496027|gb|EGC93886.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii
           ECD227]
          Length = 491

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  + V  +  G H A N    + + +    + D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAPGRHNALNAAAAVAVATEEGIEDDVIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLNPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPEKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGESPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAKVAEMLAPVLTGNDLILVQGAGNIG--KIARYLAE 477


>gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
 gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
          Length = 492

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 156/452 (34%), Gaps = 38/452 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G++ DSR + P   F A+ G   DG  F   A   GA  V         +   +  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPDDLPEATA- 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+  
Sbjct: 84  WIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGTVG 143

Query: 145 ---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          + + +  TLAR+  +    +     SH  E R L   V    A  
Sbjct: 144 IVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRL-DGVELTAAAF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G   I 
Sbjct: 203 TNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAG-HAIR 261

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+  +   +L +         + +   GK   V    +G    +N L+  G+     A
Sbjct: 262 TTGRGGDF-IRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLALATPA 320

Query: 309 DVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    +      G  G+  R     G   L+D  Y   P +++    VLS + P  
Sbjct: 321 GQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---HVLSALRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
            GR + V G         +     +AE L+      V ++  +             L  +
Sbjct: 376 SGRLVVVFGCGGNRDAGKRPIMGAIAERLA----DRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRAGVRDLRAGDVLVVAGKG 463


>gi|240950384|ref|ZP_04754647.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
 gi|240295098|gb|EER45930.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
          Length = 475

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 146/438 (33%), Gaps = 51/438 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV ++ +  S   +       IPV     +L  +
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAIDESNPEVAAAKEARIPVIQRAQMLAEI 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IAI G+ GKTTT  M+++  +            N  +        
Sbjct: 115 MRFR---------HGIAIAGTHGKTTTTAMISMIYTEAGLD---PTFVNGGLVKSAGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++        
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     +  K      + + S+G S+ AD+++  ++Q   Q    V
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ +EV+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +      ++ + Y  +P  +   I    Q       R + V          ++    D  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQ--GWENKRVVMVF--QPHRYSRTRDLFDDFV 389

Query: 394 EVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLV 442
           +VLS          Y      + G     L  ++     V          L   +   + 
Sbjct: 390 QVLSQVDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQIIQ 449

Query: 443 DGDVVVVKSSNSC-GFYR 459
           DGD+++ + + +     R
Sbjct: 450 DGDLILAQGAGNVSKLSR 467


>gi|58583448|ref|YP_202464.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428042|gb|AAW77079.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 500

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/403 (20%), Positives = 138/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 115 MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 162

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 163 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 212

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      I +A AE  + L   G   L  DD     L  ++     + + S
Sbjct: 213 NIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLLCIDDPEVAALAGRTP----RHVMS 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 269 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 328

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              T  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 329 APGTIARALENF---AGIGRRFNDLGEVTTSTGARVRVVDDYGHHPRELEA---VFAAAR 382

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 383 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 441

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             +  L   +   L DGD++++  +   G
Sbjct: 442 RAIRARGRSEPVVVGQIASLAEVLPDVLQDGDLLLMMGAGDIG 484


>gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
 gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
          Length = 496

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 152/480 (31%), Gaps = 65/480 (13%)

Query: 10  LLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L++   G  I I+        + +  +++++     F  IKG ++D HD I   V+ GA 
Sbjct: 3   LIENTDGLDIDIISGKFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            VVV      +I    I V  VD    AL +L+ A       K  II ITG+ GKTT+  
Sbjct: 63  AVVVER----NIKRDDICVIKVDSTRAALARLSAAYFGHPAKKMKIIGITGTKGKTTSSY 118

Query: 125 MLTIALSSIKKT-------------YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           ML   L    K              +    +            +  +D       + +S 
Sbjct: 119 MLKKLLEQNAKVGLIGTNGITVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEVSS 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              +      ++ +I + T I+P H+         E    K+  F+  EKT    +N DD
Sbjct: 179 QAVMLKRIEGIKFYIGIFTNISPDHIGPDEHKDFTEYLMYKSLFFKQCEKT---VVNADD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQ-------- 277
                +  +S +        +   K  DF +      S+     +   +           
Sbjct: 236 EHSAYILEQSTSDEK-----YEFGKCGDFVINNINYISKKDFLGTSFCISCSKNVKDKYR 290

Query: 278 -GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +  +++    G     N L  L    I          AL           R   A + 
Sbjct: 291 VSEVGDILVGIPGEFNVYNALSALSAAIICRVKPAVLQTALKDIKVNG----RMEVAYSS 346

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +I + Y  N  S ++ I  L +  P    R + V G     G  S+     + E+ 
Sbjct: 347 HDIKIIID-YAHNAISTESLIKTLRRYEPK---RLVVVFGS---GGNRSKDRRYSMGEIC 399

Query: 397 SLYNISHVWLSG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  V  +           +  + + L                  +   +   GD++
Sbjct: 400 GKMADFSVVTADNSRYEKTEDIIADIVEKLSETGGKYITVPDRKEAIFYAMENSKPGDII 459


>gi|212702358|ref|ZP_03310486.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
 gi|212674236|gb|EEB34719.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
          Length = 457

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 149/411 (36%), Gaps = 42/411 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   V      +I +    ++L  L +L            +AI G+ GKTTT  + 
Sbjct: 73  AIAEDNPEVVEARRRNIAIIPRAEMLAELMRLRQG---------VAIAGTHGKTTTTSLT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                +       I      IG  L +      +  G + +  +   +  FL   + P I
Sbjct: 124 ASIFDTAGLDPTVI------IGGRLNVYGTNAHLGSGHYLIAEADESDGSFLC--LFPII 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   HL ++   + I  A  +    +   G   +  DD     L  +      + 
Sbjct: 176 NVVTNVDEDHLDHYGTRQAIDDAFVQFMNKVPFYGLNVVCGDDPGVRALLPRVK----RP 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G + +   +    +     S  EV    + + EV     G H   N L  +G  + 
Sbjct: 232 VLTYGFAADNQLRAVLLE-SGMTSRFEVWRDDQKLGEVTLPHPGRHNILNALAAIGAATA 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  ++ L+ F    G G+R+     +   T+ID+ Y  +PA + A ++   Q+ P
Sbjct: 291 ADIPFERCVEGLATF---RGVGRRFEFKGERNGVTVIDD-YGHHPAEIAATLATARQVFP 346

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVL---SLYNISHVWLSGFHVLALKDA 417
           +   RR+ V             F       D+ + L    +Y  S   + G    +L   
Sbjct: 347 N---RRLVVAFQPHRFSRTQAHFGEFCKVFDVVDQLVLTEIYAASEKPIPGVSGESLAQG 403

Query: 418 LPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +     V Y +T+D +   +   L  GDV++   + +    R+    LE
Sbjct: 404 MRQVSETPVTYFQTIDAMVKGLDDILKPGDVLLTLGAGTI--TRVGPAWLE 452


>gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
 gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
          Length = 492

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 98/452 (21%), Positives = 157/452 (34%), Gaps = 38/452 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G++ DSR + P   F A+ G   DG  F   A   GA  V       A +   +  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPADLPEATA- 83

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G+  
Sbjct: 84  WIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGTVG 143

Query: 145 ---------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          + + +  TLAR+  +    +     SH  E R L   V    A  
Sbjct: 144 IVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRL-DGVELTAAAF 202

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIY 248
           T +   HL     IE+   AK  +F  L   G    +N D ++ E +   + A G   I 
Sbjct: 203 TNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAG-HAIR 261

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+  +   +L +         + +   GK   V    +G    +N L+  G+     A
Sbjct: 262 TTGRGGDF-IRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLALATPA 320

Query: 309 DVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    +      G  G+  R     G   L+D  Y   P +++    VLS + P  
Sbjct: 321 GQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---HVLSALRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
            GR + V G         +     +AE L+      V ++  +             L  +
Sbjct: 376 SGRLVVVFGCGGNRDAGKRPIMGAIAERLA----DRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRAAVRDLRAGDVLVVAGKG 463


>gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
 gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
          Length = 494

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 167/475 (35%), Gaps = 48/475 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ +    +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   VV 
Sbjct: 6   LRDVLAPWVNDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             D     G+L+    +PV  +  +   L+ L      +  +   +I +TG+ GKTTT +
Sbjct: 66  QADDATPDGTLTEMHGVPVIYLAHLNQRLSALAGRFYRQPSTALQLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELG 168
           +L     ++ KT A +G+  N +   +  +                 +    DF   E+ 
Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G ++     +    AV T ++  HL     +    +AK  +F    + G   +N D
Sbjct: 186 SH--GLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE-HQVGQKVINAD 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D       ++       ++     S  A   +            ++      +  +    
Sbjct: 243 DEVGRRWLSRLPDAVAVSVAGSVDSSRARWLKATHIDYHDSGFTVQFDSSWGAGAINSRL 302

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+L+ L  +  L   ++  ++A S   P  G   R    L  G  T++ + Y 
Sbjct: 303 MGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCG---RMEVFLASGRPTVVVD-YA 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++ A   L+    H  G    V G   +     +     +AE L+      V ++
Sbjct: 359 HTPDALEKA---LAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLA----DRVIVT 411

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +         +   L  +  V                    DVV+V  K 
Sbjct: 412 DDNPRSEDPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKG 466


>gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 562

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 105/526 (19%), Positives = 173/526 (32%), Gaps = 90/526 (17%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L +  +G  IG      V+ I++DSR +  +  F A+ G    G +F      K  
Sbjct: 4   TLKKLAEIARGEIIG-DGTVTVDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQTSAKAV 62

Query: 66  ---GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
                 V   +   +  S   P+  VDD+   L  ++           T++ +TG+ GKT
Sbjct: 63  LTDAAGVDILNGSDTAESFDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTSGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGI 164
           TT  +L   L +   +   IG+    I               TL  +        V   +
Sbjct: 123 TTTYLLESGLLAAGYSTGLIGTTGTRINRTPVDTQLTTPEAPTLQELFARMVDEGVTHVV 182

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R     V   +   T ++  HL     +EE  SAKA++F G        
Sbjct: 183 MEVSSHALDLGR--VQGVDFAVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGNNAARHAV 240

Query: 225 LNYDDSFFELLKAKSHALGIK-TIYSF----------GKSKNADFQLRK----------- 262
           +  +D + E L  +  A  I  T+ S           G    AD  LR+           
Sbjct: 241 VCINDDWGERLADQVDAEDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTRELLVPGTV 300

Query: 263 --WKQCSEQSW-----MEVQLQ----------GKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             W+Q  E +      +E+              +S +      G     N  + +G+ S 
Sbjct: 301 VAWQQSVETTGEQQVALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMASA 360

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS---- 361
              D+DT I A          G+  R    Q F  ++D  Y   PA+++A +  L     
Sbjct: 361 AGIDLDTFITA---LTKVAVPGRMQRIDEGQDFVAVVD--YAHKPAAIEAVLETLRSQLE 415

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVL-------SLYNISHVWLS 407
                 +GR   V+G   +     +           D   V            I    ++
Sbjct: 416 SAGNTAQGRLGVVVGAGGDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIREAVMA 475

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           G       +   R + +    +       + +   DGD V+V  K 
Sbjct: 476 G--AREAAEESNRPVEIVEIASRADAIDAVVNWAHDGDAVIVVGKG 519


>gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 514

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 157/453 (34%), Gaps = 43/453 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  + P + +  ++G    G  F   A   GA  V+ + D +A      +PV  
Sbjct: 40  TGVTLSSGDVQPGDLYVGLRGVRVHGARFAADAAASGAVAVLTDPDGLADAQGSGLPVIL 99

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL  +A        + AT+  +TG+ GKT+   +L   L  +        +   
Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159

Query: 146 HIGVPLTLARMPV--------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            IG     +R+                + +     + +S     R     +   IA    
Sbjct: 160 RIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDIAAFIN 219

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL +++  EE   AKA  F+  ++     ++ D  + + +   S      T  +  
Sbjct: 220 LSHDHLDDYADFEEYFDAKAAFFDP-DRARRGVVSLDTEWGQRIVDGSRIPM--TTIASK 276

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              +AD+ +   +Q  + +   ++    + +       G+ MA N  + + ++     D+
Sbjct: 277 PGVDADWTVTVLEQTPDSTGFRLEGPDNRVLVSRVPVPGWFMAANAGLAIVMLVESGYDL 336

Query: 311 DTAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     L      +    G+  R +   G    +D  Y   P + +  +  L    P   
Sbjct: 337 DAVAHVLDRDGGIQAYIPGRAERVSGETGPLFFVD--YGHTPDAFEQTLQALR---PFTP 391

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------------ALKD 416
           G+ + V G     G+   +   ++  + +      V ++ +H              A   
Sbjct: 392 GKLVMVFGA---DGDRDTTKRAEMGAIAARL-ADVVVITDYHPRYEDPASIRASLIAGAM 447

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A      +H             S + +GD ++V
Sbjct: 448 AAVPDREIHEVPDPATAIRTAVSLVGEGDTILV 480


>gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus
           EPS]
 gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           EPS]
          Length = 517

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 151/456 (33%), Gaps = 65/456 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L + +QG                DSR +   + F A  G   DG   +  A
Sbjct: 9   MAALW----LKERVQGALHA------------DSRPVGAGDGFIAWPGAATDGRKHVAAA 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSV 117
           + +GA   +V  + V + G            L A      +A   +      ++A+TG+ 
Sbjct: 53  LAQGAAACLVEHEGVDAFGFGEDDRIASYPGLKAATGPIASAFYDNPSALLDVLAVTGTN 112

Query: 118 GKTTTKEMLTIALSSIK-------------------KTYACIGSYNNHIGVPLT------ 152
           GKT+T   L  +LS+++                      A +G+    +   LT      
Sbjct: 113 GKTSTAWWLAESLSTLRAAGGVRAMRPDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTT 172

Query: 153 --------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                     R  V+  FG   +  S +G         +  +AV T     HL     ++
Sbjct: 173 PDPVMMQGELRALVERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMD 232

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGK-SKNADFQLR 261
               AKAE+F          +N DD     L A      +G   +++     K A    R
Sbjct: 233 AYWEAKAELF-RWPGLRAAVINIDDMHGASLCANLVDAGIGALDVWTVSAGGKPARLVAR 291

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                ++     V  QG           IG +   N+L  LG +  L   +  A+ A + 
Sbjct: 292 DIGYDAQGLQFSVTEQGSVSVERLSTGLIGQYNVANLLGVLGTLRALGLSLSRAVAACAN 351

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                GR +R       G   L    Y   P ++  A++ L  ++    G    + G   
Sbjct: 352 LTSVPGRMERVSV---GGNAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCLFGCGG 408

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +   + +     +AE        HV ++  +  + K
Sbjct: 409 DRDPIKRPMMAAVAE----RQADHVIVTSDNPRSEK 440


>gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 523

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 161/464 (34%), Gaps = 64/464 (13%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +       V G+++ S  + P + + A+ G    G  +   A  +GA  V+ +    
Sbjct: 28  GAPVQGDAGTAVTGVTLASGEVGPGDLYAALPGARTHGARYAADAAARGAAAVLTDPTGR 87

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
               +  +PV  VDD  G L  +A         +  +I ITG+ GKTTT  ++   L++ 
Sbjct: 88  EEAAATGLPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAA 147

Query: 134 KKTYACIGSYNNHIGV------------------------PLTLARM-PVDVDFGIFELG 168
            +    +G+                                  LARM    V   + E+ 
Sbjct: 148 GRGTGLVGTVETRTRGRAADGTPTVTTLPSVRTTPEAPALHALLARMADSGVQTVVMEVS 207

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     +    A  T +   HL   + IE+   AKA +F+G  +     ++ D
Sbjct: 208 SHALVLGR--VGGIPFAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDG--RAAVEVVDVD 263

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQ-LQGKSMEVVHH 286
           D +   L          T+ + G   +AD+            +   +    G+S      
Sbjct: 264 DPYGRRLAGMLGDRRAVTVSTQG--ADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVR 321

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N ++ + ++  +   V+TA+            G+       Q F  ++D  Y
Sbjct: 322 LPGAFNVANAVLAVALLDAVGVPVETALTG---LAETVVPGRMEPVDAGQPFVAVVD--Y 376

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++  A++ L   +P   GR + VLG     G+        + E  +         
Sbjct: 377 AHTPDAVATALAALRAATP---GRVLTVLGC---GGDRDPGKRAAMGEAAAR-------- 422

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVV 447
            G  +L + D  PRS      E    +   + + +     GDVV
Sbjct: 423 -GSDLLVVTDDNPRS------EDPAAIRAAMLAGVPADRRGDVV 459


>gi|167856479|ref|ZP_02479196.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
 gi|167852402|gb|EDS23699.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
          Length = 475

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 146/438 (33%), Gaps = 51/438 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV ++ +  S   +       IPV     +L  +
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQRAQMLAEI 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IAI G+ GKTTT  M+++  +            N  +        
Sbjct: 115 MRFR---------HGIAIAGTHGKTTTTAMISMIYTEAGLD---PTFVNGGLVKSAGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++        
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     +  K      + + S+G S+ AD+++  ++Q   Q    V
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ +EV+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +      ++ + Y  +P  +   I    Q       R + V          ++    D  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQ--GWENKRVVMVF--QPHRYSRTRDLFDDFV 389

Query: 394 EVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLV 442
           +VLS          Y      + G     L  ++     V          L   +   + 
Sbjct: 390 QVLSQVDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQIIQ 449

Query: 443 DGDVVVVKSSNSC-GFYR 459
           DGD+++ + + +     R
Sbjct: 450 DGDLILAQGAGNVSKLSR 467


>gi|34580726|ref|ZP_00142206.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
 gi|28262111|gb|EAA25615.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
          Length = 485

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 135/397 (34%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    D+L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRADMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I    +        ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L      +  + I ++G  S++
Sbjct: 194 LDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDD---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNNASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  L   F       D+  +  +Y      + G    +L D + + 
Sbjct: 367 GKVIAIFQPHRYSRMQYLFDDFMFCFADADILYITDIYAAGENPIEGITGRSLVDKITKR 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAELDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|220931753|ref|YP_002508661.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
 gi|219993063|gb|ACL69666.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
          Length = 459

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 145/422 (34%), Gaps = 41/422 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA ++V++T +      L          L    +  + A+L      IAI+G+ GKTTT
Sbjct: 62  KGADMIVISTAIPEDNSEL---QAARKAGLPVYGRAQMIAKLMEDKKTIAISGTHGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L   K         +  + V   L  +  +V  G  E  ++   E        
Sbjct: 119 TSMVATILKENK--------MDPTVMVGGVLNNIGGNVYLGKGEYFVTEADESDGSLLYF 170

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   V+T I   H   +   E++ +   E    + K G   +  +D     +       
Sbjct: 171 DPSGVVVTNIEFDHHDYYDSKEKLLNTFKEFVNKIPKDGKAIVYAEDDNIRKILDNE--- 227

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
             + + ++G +     +          S+  +    + + E+     G H   N L  + 
Sbjct: 228 -DRRVLTYGINAGK-LKAININTLPFGSYYNLVYGERVLGEIRLQVPGVHNVLNSLAAVA 285

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   +        ++L  F    G  +R+          +ID+ Y  +P  +KA +    
Sbjct: 286 VGMYVGLSFTDIQESLGKF---YGVHRRFEKKGLIDSILIIDD-YAHHPTEIKATLKAAR 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVL 412
                   R IA+          ++ F  + A+         V  +Y+ S   + G    
Sbjct: 342 NTGYE---RIIAIF--QPHRYSRTRHFMEEFAKCFDDVDHLIVTDIYSASEKPIPGVTAE 396

Query: 413 ALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS---CGFYRLINLLLEE 467
            L   +       V Y   ++ +  +++  +   D+V+   + +    G  RL+N L E+
Sbjct: 397 KLALKIDNCNGPDVDYIPELEEVVDYVEKIIKPRDLVITIGAGNVYKVG-DRLVNRLREK 455

Query: 468 FP 469
             
Sbjct: 456 RE 457


>gi|88704101|ref|ZP_01101816.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
 gi|88701928|gb|EAQ99032.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
          Length = 463

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 147/417 (35%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  + D + +     IPV    ++L  L +             IA+ G+ GKTTT  +
Sbjct: 71  SAVGEDNDELVAARERRIPVVRRAEMLAELMRHRYG---------IAVAGTHGKTTTTSL 121

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +    ++     T+   G  N+      T A++     F I E   S    +      ++
Sbjct: 122 IAAVFAAAGLDPTFVIGGRVNST----GTHAQLGAG-RFLIAEADESDASFLH-----LQ 171

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P + V+T I   H+  +     E+     E    L   G   L  DD     L A     
Sbjct: 172 PMVTVVTNIEADHMETYGGDFAELRRTFVEFLHNLPFYGLAVLCVDDPVLAGLDADL--- 228

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTL 300
             + I  +G S++AD+++   +     +   V+       + +  +  G H   N    +
Sbjct: 229 -GRPILGYGFSEHADYRISDLEPDGLSTRFVVRRPDAHPPLAISLNMPGPHNVLNATAAV 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +    D      AL+ F     R   +           + + Y  +P  + A ++  
Sbjct: 288 AVATDQGIDDAVIQNALANFGGVGRRFSVFDKVRIGAHEVTLVDDYGHHPTEVAATLASA 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD- 416
            Q  P    R + V          ++  + D   VLS  +   +  V+ +G  V+   D 
Sbjct: 348 RQAWPE--RRVVMVY--QPHRFTRTRDLYDDFVSVLSETDFLVLLEVYPAGEEVITGADS 403

Query: 417 -ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +L RSI         Y+ +   +   +   L  GD+VV + +      RL N L +
Sbjct: 404 RSLARSIRQRGQLDPLYAASALEVPALLVDVLEPGDIVVTQGAGDIA--RLANKLRD 458


>gi|253988595|ref|YP_003039951.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780045|emb|CAQ83206.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica]
          Length = 492

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 145/421 (34%), Gaps = 51/421 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +   + +     IPV    ++L  L +             IAI G+ GKTTT  M+
Sbjct: 88  AILADNPEIIAAREARIPVIRRAEMLAELMRYR---------HGIAIAGTHGKTTTTAMI 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 139 SSIYAQAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 190

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV+T I   H+       E++          L   G   +  DD   + L  +      +
Sbjct: 191 AVVTNIEADHMDTYHGDFEKLKQTFINFLHNLPFYGRAVMCIDDPVVKELIPRV----GR 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S+ AD ++  ++Q   Q +  V  Q    ++VV +  G H A N    + + +
Sbjct: 247 YITTYGFSEEADVRITHYEQKGAQGYFTVSRQDMVDLKVVLNAPGRHNALNAAAAVAVAT 306

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPASMKAA 356
                    + AL+ F    G G+R+             +    ++ + Y  +P  + A 
Sbjct: 307 EEGISGSDILAALAGFQ---GTGRRFDFLGNFSLEHVNGKSGSAMLVDDYGHHPTEVDAT 363

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLS 407
           I       P  + R + V          ++  + D A VL+          Y+     + 
Sbjct: 364 IKAARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLNQVDALLMLDVYSAGEAVIP 419

Query: 408 GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           G    +L   +     +        + + + +   L   D+V+V+ + + G  ++   L 
Sbjct: 420 GADSRSLCRTIRSRGKLDPILVSEPEKVAIVLAQVLDGNDLVLVQGAGNIG--KIARNLA 477

Query: 466 E 466
           E
Sbjct: 478 E 478


>gi|114763032|ref|ZP_01442462.1| UDP-N-acetylmuramate--L-alanine ligase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544356|gb|EAU47364.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 478

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 134/402 (33%), Gaps = 43/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       +PV    ++L  L +L            +A+ G+ GKTTT  M
Sbjct: 89  SAIKPGNPELDEARRRGLPVVRRAEMLAELMRLKSN---------VAVAGTHGKTTTTTM 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +        G  +  +     +     +   G+ E  +    E     + +   
Sbjct: 140 VATLLDA--------GQLDPTVINGGIIHAYGSNARVGLGEWMVVEADESDGTFNRLPAT 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE +     +    +   G      D +  + L  +   +  +
Sbjct: 192 IAIVTNIDPEHMEHWGSIENLRDGFYQFVSNIPFYGLAVCCTDHAEVQALVGR---VSDR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +    +     +  ++ LQG+     E      G H   N L  + +
Sbjct: 249 RVTTYGFNAQADVRAVNLRYEKGIAHFDILLQGEDSKIEECTLPMPGDHNVSNALAAVAV 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F       +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 309 ARHLGMTREEIRAALAAFGGVN---RRFTRVGEVNGVTVIDD-YGHHPVEIAAVLKAARQ 364

Query: 363 I---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R   +  D C     +     D+  +  +Y      + G     
Sbjct: 365 ASEGRVIAVHQPHRYSRLHTLFDDFCACFNEA-----DVVAIGDVYGAGEDPIEGASRDD 419

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L   L R  H H       D L   ++     GD+VV   + 
Sbjct: 420 LVAGLIRHGHRHARAIHDEDDLERLVREQARPGDMVVCLGAG 461


>gi|15892254|ref|NP_359968.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia conorii str.
           Malish 7]
 gi|20532173|sp|Q92IT9|MURC_RICCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15619392|gb|AAL02869.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia conorii str.
           Malish 7]
          Length = 485

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 135/397 (34%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    D+L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRADMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I    +        ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L      +  + I ++G  S++
Sbjct: 194 LDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDD---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNNASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  L   F       D+  +  +Y      + G    +L D + + 
Sbjct: 367 GKVIAIFQPHRYSRMQYLFDDFMLCFADADILYITDIYAAGENPIEGITGRSLVDKITKR 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAELDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|90424796|ref|YP_533166.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
 gi|109892731|sp|Q211T9|MURC_RHOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90106810|gb|ABD88847.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
          Length = 467

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 149/415 (35%), Gaps = 49/415 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV+T +      L       IPV    ++L  L +L            +AI G+
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC---------VAIAGT 115

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L + +     I      I    T AR+    ++ + E   S    ++
Sbjct: 116 HGKTTTTSMVAALLDAGEFDPTVIN--GGIINAYGTNARLGAG-EWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +A++T + P HL +F   + +  A  +  E +   G   +  D    + L 
Sbjct: 173 -----LPADVAIVTNVDPEHLDHFKTFDAVQEAFRDFVENVPFYGFAVMCIDHPVVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIG 289
            K      + I ++G++  AD +L         S   V  + +         ++V    G
Sbjct: 228 GKIE---DRRIITYGENPQADVRLLDLTPNGGSSAFRVAFRDRKAGTAHEIADLVLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N    + +   L    DT  KAL+ F    G  +R+         T+ID+ Y  +
Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAGFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNIS 402
           P  + A +    +     +G+ IAV+       +  L + F       D+  V  +Y   
Sbjct: 341 PVEIAAVLKAARE---STKGKVIAVVQPHRFTRLQSLFEEFCTCFNDADVVVVAEVYPAG 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
              + G         L    H       +   L   +  +   GD VV   + + 
Sbjct: 398 EAPIEGVDRDHFVLGLRAHGHREVIPLQESAALASVVYGAAHSGDYVVCLGAGNI 452


>gi|15965928|ref|NP_386281.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium meliloti
           1021]
 gi|307308238|ref|ZP_07587947.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
 gi|307319705|ref|ZP_07599130.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|23821882|sp|Q92NM0|MURC_RHIME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15075197|emb|CAC46754.1| Probable UDP-N-acetylmuramate--alanine ligase [Sinorhizobium
           meliloti 1021]
 gi|306894636|gb|EFN25397.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|306901236|gb|EFN31842.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 471

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 147/407 (36%), Gaps = 47/407 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     +PV    ++L  L +   A         IAI G+ GKTTT  M+
Sbjct: 75  AIKKDNPELIAAREKFLPVVRRAEMLAELMRFRNA---------IAIGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I      I    T ARM    ++ + E   S    ++     +   I
Sbjct: 126 AALLDAGGLDPTVIN--GGIINAYGTNARMGAG-EWMVVEADESDGTFLK-----LPADI 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I P HL ++   + + +A  +  E +   G   L  D    + +  K      + 
Sbjct: 178 AVVTNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIE---DRK 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLMT 299
           + ++G++  AD +    +     S  +++++ +         ++     G H   N    
Sbjct: 235 VVTYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEIKDLRLPMPGRHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L    +   + L+ F   +   +R+          + D+ Y  +P  ++A   V
Sbjct: 295 VAVAQRLGIKPEDIARGLATFGGVK---RRFTLTGEWNGARIFDD-YGHHPVEIRA---V 347

Query: 360 LSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFH 410
           L       +GR +AV        L  + E  + +  F+  D   +  +Y      + G  
Sbjct: 348 LRAAREACQGRIVAVHQPHRYSRLSSLFE--DFTSCFNDADTILLAPVYAAGEEAIEGVS 405

Query: 411 VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             AL D +  + H    +    + L   I      GD VV+  + S 
Sbjct: 406 SEALVDRIKAAGHRDARHVPGQEALAPVIAKIAQPGDFVVLLGAGSI 452


>gi|320172818|gb|EFW48050.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 491

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 131/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSCIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  M V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFLGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|193213696|ref|YP_001999649.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobaculum parvum NCIB
           8327]
 gi|229486480|sp|B3QLW3|MURC_CHLP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193087173|gb|ACF12449.1| UDP-N-acetylmuramate/alanine ligase [Chlorobaculum parvum NCIB
           8327]
          Length = 471

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 134/395 (33%), Gaps = 44/395 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            +     IPV   D++LG L +  V          I ++G+ GKTTT  M+   L    +
Sbjct: 84  QAAEKQGIPVIKRDEMLGELMRYKVG---------ICVSGTHGKTTTTAMIATMLLESGQ 134

Query: 136 T-YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +    IG  ++++     +     +    + E       E       + P IAV+ ++  
Sbjct: 135 SPTVMIGGVSDYLKGSTVVG----EGRHMVIEA-----DEYDRAFLKLTPTIAVVNSLES 185

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H+  +  ++ +  + A     +   G +    D      L ++ +    +   +FG  +
Sbjct: 186 EHMDTYGTMDNLRDSFAAFANKVPFYGRVICCVDWPEIRSLISRLN----RRYTTFGIEE 241

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD      + C   S   V+  G+S   V     G H   N L    +   +    +  
Sbjct: 242 PADVMASDLEACEGGSVFTVEAFGESYPGVRLGVPGRHNVLNALAAFSVGLEIGLPPEKI 301

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I   +      G  +R++     G   L+ + Y  +P+ +KA +            R +A
Sbjct: 302 I---AGLGAYTGMRRRFQMKFKGGNGLLVVDDYAHHPSEVKATVKAARHGWKEH--RIVA 356

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPR-- 420
           V      +   +  F ++    LS  +  +V              G     + +A  +  
Sbjct: 357 VF--QPHLYSRTSEFAVEFGWALSRADAIYVAGIYPSRERTEDFPGVTGELVAEAARKAG 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  V +    + L   ++       +++   +   
Sbjct: 415 AKEVTFEPDSEQLLDSLRQEAGPDTLILFMGAGDI 449


>gi|85703766|ref|ZP_01034870.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
 gi|85672694|gb|EAQ27551.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
          Length = 465

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 141/422 (33%), Gaps = 50/422 (11%)

Query: 47  KGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           +  + DG +   I  A++ G          +       +PV    ++L  L +L      
Sbjct: 64  RAENLDGAEVVVISSAIKPG-------NPELDEARKRGLPVVRRAEMLAELMRLKSN--- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IA+ G+ GKTTT  ++   L          G  +  +     +     +   G 
Sbjct: 114 ------IAVAGTHGKTTTTTLVAELL--------VKGGIDPTVINGGVIHAYGSNARMGQ 159

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E  +    E     + +   IA++T I P H+ ++   E +     +    +   G   
Sbjct: 160 GEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWGDFERLRQGFYDFVSNIPFYGLAV 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSME 282
              D    + L  +   +  + + ++G +  AD +          +  +V LQ  G+ +E
Sbjct: 220 CCTDHPEVQALVGR---ITDRRVLTYGFNAQADVRAVNLTYEKGVAHFDVALQAEGRVIE 276

Query: 283 -VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +   L    D    AL+ F       +R+         T+
Sbjct: 277 GCTLPMPGDHNVSNALSAVAVARHLGMKADEIRAALASFGGVN---RRFTRVGEVDGVTI 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLA 393
           ID+ Y  +P  + A +    Q +    GR IAV         L+  F          D+ 
Sbjct: 334 IDD-YGHHPVEIAAVLRAARQATT---GRVIAV-HQPHRYTRLASLFDDFCGCFNEADVV 388

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  +Y      + G     L   L R  H H       D L   ++     GD+VV   
Sbjct: 389 AIAEVYAAGEDPIPGASRDDLVAGLIRHGHRHARAIRDEDDLERLVREQAGPGDMVVCLG 448

Query: 452 SN 453
           + 
Sbjct: 449 AG 450


>gi|329572871|gb|EGG54496.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1467]
          Length = 379

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 154/436 (35%), Gaps = 80/436 (18%)

Query: 44  FAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             I G  + D H+ I  A++ GA                   V    D +         A
Sbjct: 2   IVIAGNAFPDTHEEIARAIELGAE------------------VIRYHDFI---------A 34

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R     T IA+TGS GKT+T  +L   LS I  T   IG    H            D DF
Sbjct: 35  RFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGHG---------EPDADF 85

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
             FE       E R       P  A++T I   H   +  IE++ SA   +   ++K   
Sbjct: 86  FAFEA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKKG-- 138

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           IF   DD +   L+++        +Y +G S+  D Q R  ++ +E S  +V  +   + 
Sbjct: 139 IFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKADFVG 192

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G+H   N L  + +      D+    + +  F   + R    + +       +
Sbjct: 193 HFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM-----I 247

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I + Y  +PA +KA I    Q  P  E   IAV          + +   + AE L L   
Sbjct: 248 IVDDYAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMDEFAEALDL--A 301

Query: 402 SHVWLS----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V+L           G   +  L + + +   V   + +  L  F      +  VVV  
Sbjct: 302 DEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDF------ENAVVVFM 355

Query: 451 SSNSC-GFYRLINLLL 465
            +     F +    LL
Sbjct: 356 GAGDVQKFEQAYETLL 371


>gi|329928513|ref|ZP_08282381.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
 gi|328937772|gb|EGG34180.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
          Length = 458

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 159/443 (35%), Gaps = 55/443 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTD------MVASIGSLSIPVFGVDDVLGAL 95
            A KG       +I H  ++  GA LVV +T              L+IPV         L
Sbjct: 45  LAAKGAKI----YIGHTAEQVQGADLVVYSTALSKDNVERVEAEKLNIPV---------L 91

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + ARL ++   +A+ G+ GKTTT  M+ + +         I      I    T A+
Sbjct: 92  HRAQMLARLLNERKGVAVAGAHGKTTTSSMIALVMEECGVDPTFI--IGGEIMNVGTNAK 149

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
                +  + E   S    +++      P + V+  I   HL N+      + +A  +  
Sbjct: 150 AGEG-EHVVAEADESDGSFLQY-----HPWLGVVLNIEADHLENYEGDFNRLKAAYVQFL 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             ++  GT  +  DD+  + +           + ++G   +A++               +
Sbjct: 204 SQIKADGTAVVCADDNNIQAILPDLKC----NVTTYGIHADAEYTATNLVLGDRHVSFTM 259

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              G  +  V     G H   N + T+          +  ++A+  F    G  +R++  
Sbjct: 260 LHNGMELGTVELSVPGKHNVYNAMATVICCLKSGISFEAIVEAIVKF---NGAKRRFQVL 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQS 387
                  +ID+ Y  +P  ++A IS           R IAV            +   S++
Sbjct: 317 GEAEGILVIDD-YAHHPTEIEATISAAKAT----GKRIIAVFQPQRYSRTFFLLDAFSRA 371

Query: 388 F-HIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
           F   D   +  +Y       + G     L + + ++ +    Y  T + +   ++  + +
Sbjct: 372 FGEADEVIITDIYSPAGEKQIEGISSGKLVELIVQNSNAGARYLPTKEDVLNDLKGRVKE 431

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD+V+   +     +++   L E
Sbjct: 432 GDLVLTMGAGDI--WKVGAALAE 452


>gi|325923953|ref|ZP_08185543.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325545579|gb|EGD16843.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 141/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      I +A AE  + L   G   L  DD     L +K+     + + S
Sbjct: 190 NIDSDHLENYGNDFSRIQAAFAEFLQRLPFYGLALLCIDDPEVAALASKTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             +T  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 APETIARALENF---AGIGRRFNDLGEVTTSTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   DA   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADARALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQISGLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|324112496|gb|EGC06473.1| UDP-N-acetylmuramate-alanine ligase [Escherichia fergusonii B253]
          Length = 491

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 133/408 (32%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + I ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K  + V  +  G H A N    + + +    + D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAPGRHNALNAAAAVAVATEEGIEDDVIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R             ++    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLNPVNSKSGTAMLVDDYGHHPTEVDATIKAARAGWPEKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V+         ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGESPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAKVAEMLAPVLTGNDLILVQGAGNIG--KIARYLAE 477


>gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. Mississippi]
          Length = 472

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 150/455 (32%), Gaps = 52/455 (11%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G  +GI+ DSRS+ P   F  +      G  F+  AV+ GA  +V            S  
Sbjct: 12  GQASGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHVDHSQI 68

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +             +          +  +TG+ GKT+  +           T A +G+  
Sbjct: 69  IICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128

Query: 145 NHIGVPLTLARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIA 187
             I    TL            E                 +  S  G  +   + V+   A
Sbjct: 129 A-IVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASTA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  HL     +E+  + K ++F E L   G   LN D   +  L+  +     + 
Sbjct: 188 AFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAG---RN 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I ++G     D +L + ++ ++   + V++ G+   +     +G     N+L  L +V+ 
Sbjct: 245 IITYGVDTG-DVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAVVAA 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             +                    R       G   +ID  Y     ++K A++ L     
Sbjct: 304 SGSG-----HRDVPIDRLAPPRGRMELI---GDRIIID--YAHTSDALKHALTSLK--WH 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               + + V G     G+  +     +  V S Y    V ++  +  +      R   + 
Sbjct: 352 GFPQKTVLVFGC---GGDRDREKRKTMGMVASQY-ADVVIVTDDNPRSENPETIRKEIML 407

Query: 426 YSETM-------DGLFLFIQSSLVDGDVVVV--KS 451
           + E         D +   +  ++ +  V+++  K 
Sbjct: 408 HCENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442


>gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis
           thaliana]
 gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
           [Arabidopsis thaliana]
          Length = 772

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 137/394 (34%), Gaps = 39/394 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI  DSR ++  + F    G      +F+  A ++GA  VV + ++         
Sbjct: 262 DVEITGIQHDSRGVSAGDLFVCCLGSE----NFLSEADKRGAVAVVASKEIDIEDTLGCR 317

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V+D    L  LA           ++I +TG+ GKTTT  ++     ++        
Sbjct: 318 ALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRTGMFS 377

Query: 142 SYNNHIGVPLTL----ARMPVD---------------VDFGIFELGMSHLGEIRFLTHLV 182
           + + +I     L    A M  D                +  + E     L   +     V
Sbjct: 378 TVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELALGK--CDEV 435

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSH 240
              IAV T +   +       EE   A+A++F  +   +     +N DD           
Sbjct: 436 DFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAAFFVQ--Q 493

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + +F  ++  AD    K++    ++ + V      +E+    +G H   N+L  
Sbjct: 494 GNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIYNILAA 553

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   + A ++  ++ +       G   R      +  F +I + +   P  +   +  
Sbjct: 554 VAVGIAVGAPLEDIVRGVEEVDAVPG---RCELIDEEQAFGVIVD-HANTPDGLSRLLDS 609

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + ++ P    R I V+G   E     +     +A
Sbjct: 610 IRELKP---RRIITVIGCEGENERGKRPLMTKIA 640


>gi|119387199|ref|YP_918254.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
 gi|166224712|sp|A1BAL4|MURC_PARDP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119377794|gb|ABL72558.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
          Length = 475

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 149/433 (34%), Gaps = 57/433 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV    ++L  L +L            +AI G+
Sbjct: 76  ISTAIKKG-------NPELEEARRRGLPVVRRAEMLAELMRLKSN---------VAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +        G ++  +     +     +   G  E  +    E  
Sbjct: 120 HGKTTTTTMVATLLDA--------GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADESD 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D    + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFQDFVSNIPFYGLAVCCTDHPEVQSLV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----------MEVVHH 286
            +   L  + + +FG +  AD +    +  +  +  ++ LQG++                
Sbjct: 232 GR---LTDRRVATFGFNAQADVRAINLRYENGVAHFDIALQGEAELNEGEVPVIEGCTLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L        +AL+ F    G  +R+         T+ID+ Y
Sbjct: 289 MPGDHNVSNALAAVAVARHLGMKRAQIREALARFG---GVSRRFTRVGEVDGVTIIDD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSL 398
             +P  + A +    Q +   +GR IAV         LS  F          D+  +  +
Sbjct: 345 GHHPVEIAAVLKAARQAT---KGRVIAV-HQPHRYSRLSSLFDDFCTCFNEADVVAIAEV 400

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCG 456
           Y+     + G     L   L    H H    MD   L   ++     GD+VV   + +  
Sbjct: 401 YSAGEEPIPGASRDDLVAGLIAHGHRHARAVMDEGDLERLVREQARPGDMVVCLGAGTIS 460

Query: 457 FY--RLINLLLEE 467
            +   L   L E+
Sbjct: 461 AWANNLPERLTEK 473


>gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
 gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
          Length = 470

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 146/425 (34%), Gaps = 40/425 (9%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           A+    + GHD    A    A +V      +   +       IPV    D L AL     
Sbjct: 52  ALGATVHIGHDAAHLAEDTSAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMA--- 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI G+ GKTTT  ML ++L+++          +    +   L     + 
Sbjct: 109 ------GTRPLAIAGTHGKTTTTSMLAVSLTTLG--------LDPSYAIGGDLDAPGSNA 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E+ ++   E     H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 155 HHGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +        + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVISADHEGARELTRRVRDRVDLRVLTYGSAEDADVRVHKVTPRGLTSEVTVSLNGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   +   +R +         
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVK---RRLQLKGEAAGVQ 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------ 394
           ++ +SY  +P  M A +     +    EGR + V      +   +Q    ++ +      
Sbjct: 332 VV-DSYAHHPTEMAADLEA---MRGAVEGRILVVF--QPHLFSRTQELGKEMGQALALAD 385

Query: 395 ---VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              VL +Y      + G      +         V      D +   +      GD+V+  
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVLTM 445

Query: 451 SSNSC 455
            +   
Sbjct: 446 GAGDV 450


>gi|157827094|ref|YP_001496158.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
 gi|166224722|sp|A8GW94|MURC_RICB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157802398|gb|ABV79121.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
          Length = 478

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 142/421 (33%), Gaps = 44/421 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   V       IP+    ++L  L +L            +A++GS GKTTT  +
Sbjct: 80  SAINRNNPEVKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +     +       I   N  I    +        ++ I E   S    I      +   
Sbjct: 131 VACLFEAAGLHPTVI---NGGIINNRSTNAYLGSSNYLIAEADESDATFIS-----IPST 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I P HL  +   + + +A       L   G      D      L    + +  +
Sbjct: 183 IAIITNIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVREL---VNNITER 239

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQL-----QGKSM--EVVHHGIGYHMAQNML 297
            + ++G  S +A             S  +V++      G ++  ++     G H   N L
Sbjct: 240 KVITYGIDSDDAHITAFNISTDITSSTFDVKISLPNVSGVTIIEKITIPTPGRHNILNSL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L   +       + F   +   +R+         ++ID+ Y  +P  +KA +
Sbjct: 300 AAISVGVELDFGIKAIKNGFNSFKGVK---RRFTKVAEYNQASVIDD-YAHHPEEIKATL 355

Query: 358 SVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFH--IDLAEVLSLYNISHVWLSGFH 410
           S    I+    G+ IA+        M  + +         DL  +  +Y      + G  
Sbjct: 356 STAKNIANKQHGKVIAIFQPHRYSRMQHLFDDFMRCFDDADLLYITDVYAAGESHIEGIS 415

Query: 411 VLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +L D    L      ++   +D     I +    GD++++  + +       N L ++
Sbjct: 416 GQSLIDNIIKLKYHNQANFLAKLDDSLEVIMNKASPGDMIIMMGAGNI--SNFANELPQK 473

Query: 468 F 468
           F
Sbjct: 474 F 474


>gi|52425721|ref|YP_088858.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia
           succiniciproducens MBEL55E]
 gi|59798187|sp|Q65RY7|MURC_MANSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52307773|gb|AAU38273.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 480

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 142/417 (34%), Gaps = 42/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   V +     IPV     +L  + +             IA+ G+ GKTTT  M
Sbjct: 89  SAIKADNVEVVAAHEKRIPVIQRAQMLAEIMRFR---------HGIAVAGTHGKTTTTAM 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++  +            N  +              + I E   S    +      ++P 
Sbjct: 140 ISMIYAQAGLD---PTFVNGGLVKSAGTNAHLGCSRYLIAEADESDASFLH-----LQPM 191

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++V+T I P H+       +E+          L   G   +  DD     L  +      
Sbjct: 192 VSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGLSVMCADDPVLLELIPQV----G 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + + ++G S+ AD+++  ++Q   Q    V    G+ ++V+ +  G H A N    L + 
Sbjct: 248 RPVITYGFSEEADYRIENYEQTGFQGHYSVITPAGERIDVLLNVPGKHNALNATAALAVA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                + +  + AL+ F     R  +    +      ++ + Y  +P  +   I    + 
Sbjct: 308 KEEGIENEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVNVTIQAARKG 367

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R   +  D   +        +DL  +L +Y      ++G    +
Sbjct: 368 WENKRIVMIFQPHRYSRTRDLFDDFVRVLSQ-----VDLLIMLDVYPAGESPIAGADSRS 422

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYR-LINLLLE 466
           L  ++     V          L   +   L DGD+V+ + + +     R L+ L  +
Sbjct: 423 LCRSIRNLGQVDPILVTDTAELPEIMDRVLQDGDLVLAQGAGNVSKLSRQLVELWTK 479


>gi|239947811|ref|ZP_04699564.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922087|gb|EER22111.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 479

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 137/397 (34%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    ++L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I    +        ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L      +  + I ++G  S++
Sbjct: 194 LDYYKDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDD---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGATIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNKASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL-----GDMCEMGELSQSFH--IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  + +         D+  +  +Y +    + G    +L D + ++
Sbjct: 367 GKVIAIFQPHRYSRMQHLFDDFMLCFVDADILYITDIYAVGENPIEGITGQSLVDKITKN 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAQLDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51679 [Arabidopsis
           thaliana]
          Length = 767

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 137/394 (34%), Gaps = 39/394 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI  DSR ++  + F    G      +F+  A ++GA  VV + ++         
Sbjct: 262 DVEITGIQHDSRGVSAGDLFVCCLGSE----NFLSEADKRGAVAVVASKEIDIEDTLGCR 317

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V+D    L  LA           ++I +TG+ GKTTT  ++     ++        
Sbjct: 318 ALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRTGMFS 377

Query: 142 SYNNHIGVPLTL----ARMPVD---------------VDFGIFELGMSHLGEIRFLTHLV 182
           + + +I     L    A M  D                +  + E     L   +     V
Sbjct: 378 TVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELALGK--CDEV 435

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSH 240
              IAV T +   +       EE   A+A++F  +   +     +N DD           
Sbjct: 436 DFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAAFFVQ--Q 493

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + +F  ++  AD    K++    ++ + V      +E+    +G H   N+L  
Sbjct: 494 GNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIYNILAA 553

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   + A ++  ++ +       G   R      +  F +I + +   P  +   +  
Sbjct: 554 VAVGIAVGAPLEDIVRGVEEVDAVPG---RCELIDEEQAFGVIVD-HANTPDGLSRLLDS 609

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + ++ P    R I V+G   E     +     +A
Sbjct: 610 IRELKP---RRIITVIGCEGENERGKRPLMTKIA 640


>gi|163738719|ref|ZP_02146133.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
 gi|161388047|gb|EDQ12402.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
          Length = 465

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 143/419 (34%), Gaps = 49/419 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+  A +    A +VV+++ +      L       +PV    ++L  L +L         
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   +          G ++  I     +     +   G  E 
Sbjct: 114 ---IAIAGTHGKTTTTTMMAELM--------VAGHFDPTIVNGGIIHAYGSNARMGQGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   + +     +    +   G      
Sbjct: 163 MVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGDFDTLRDGFYDFVSNIPFYGVAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           D    + L  +   +  + + ++G +  AD +       +  +  ++ LQ +        
Sbjct: 223 DHPEVQALVGR---ITDRRVVTYGFNAQADVRAVNLTYKAGVAHFDIHLQAEDRVIEGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L        +AL+ F       +R+         T+ID+
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVN---RRFTKVGEVDGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVL 396
            Y  +P  + A +    Q     +GR IAV         LS  F          D+  + 
Sbjct: 337 -YGHHPVEITAVLKAARQA---CDGRVIAV-HQPHRYSRLSSLFEDFCACFNEADVVAIA 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSN 453
            ++      + G     L   L R  H H    +D   L   ++     GD+VV   + 
Sbjct: 392 EVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMVVCLGAG 450


>gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 414

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 129/375 (34%), Gaps = 45/375 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-------- 158
              IIA+TG+ GKTT   ++   +SS ++  A +G+  N I   LT +            
Sbjct: 17  PLRIIAVTGTNGKTTISRLIAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQN 76

Query: 159 --------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                      F   E     L + R   +     IAV + ++  HL     +E  A AK
Sbjct: 77  ALHDYAKQGATFASLEASSHGLEQGRL--NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAK 134

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSE 268
           A +F+         +N DD+  +L+ K+  +      I ++  ++N AD+ +        
Sbjct: 135 ARLFQF-NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLA 193

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   +  Q  S  V    +G+   +N++  L        D+   +  +       GR +
Sbjct: 194 GATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQ 253

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             R         L    Y   P ++   I VL  +  H   +  AV G   +     +  
Sbjct: 254 VIR-----DDERLFVVDYAHTPDAL---IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPL 305

Query: 389 HIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQ 438
                   +L   + V L+           +   + + I      +H          F+ 
Sbjct: 306 MTQ----AALDGANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVA 361

Query: 439 SSLVDGDVVVV--KS 451
                GD+VV+  K 
Sbjct: 362 EQAQAGDIVVIAGKG 376


>gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 545

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/486 (18%), Positives = 171/486 (35%), Gaps = 61/486 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            H+L +            G+    ++ + +++R +AP   F A+ G    G  F   A +
Sbjct: 19  LHELARIAGADVASSADNGWAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQF---AAE 75

Query: 63  KGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
             A  ++ + +   +        PV  VDDV   L +++         + T+I +TG+ G
Sbjct: 76  SPARAILTDREGLDIVEAAGDRRPVLVVDDVRAVLGEVSAHVYGHPSRRMTLIGVTGTSG 135

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTL------------ARMPVD-VDF 162
           KTTT  +L   L +       IG+    I    VP +L            ARM  + V  
Sbjct: 136 KTTTTYLLERGLIAAGAQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAAEGVTH 195

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--T 220
            + E+    L   R          A  T ++  HL     +++   AKA  F+       
Sbjct: 196 VVMEVSSHALSLGR--VDGTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSPVAA 253

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGK 279
               +  DD + E +     A     + + G+   +   +L   +    Q  +E+++ G+
Sbjct: 254 SASVVCVDDEWGERMAEL--ASHPLRVGTHGQEGLDCSARLTAVRDNGAQD-IELRIDGQ 310

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + E      G     N  +   +  ++ AD+   ++           G+  R    Q F 
Sbjct: 311 THEFTLPLPGAFNVANAALATALARVVGADMPQFVRG---LENAAVPGRMERIDAGQDFV 367

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   PA++ A +  L +      G  IAV       G+   +    + +  +  
Sbjct: 368 AVVD--YAHKPAAIAAVLETLREQVDGRIG--IAV----GAGGDRDTTKRAVMGQQAATR 419

Query: 400 NISHVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVV 447
               V ++          A++ A+ R          +            + +  + GD +
Sbjct: 420 -ADLVIVTDDNPRTEDPAAIRAAVLRGAREAGSGAEIRECGPRAEAIDQLVAWALPGDAI 478

Query: 448 VV--KS 451
           VV  K 
Sbjct: 479 VVVGKG 484


>gi|117924062|ref|YP_864679.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
 gi|166224701|sp|A0L5N0|MURC_MAGSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117607818|gb|ABK43273.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
          Length = 476

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 145/431 (33%), Gaps = 58/431 (13%)

Query: 53  GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A++ GA  VV       +   V +  +L IPV    ++L  L +L        
Sbjct: 56  GHT--AQAIE-GADAVVTSSAVKRDNPEVMAARALRIPVVPRAEMLAELMRLKYG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L +       +          +        V  G F 
Sbjct: 108 ----IAIAGTHGKTTTTSLVAALLGAADMDPTVVNG------GIVKSLGSNAHVGQGAFL 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  +   +  FL   + P IAV+T + P H++++   + +  A       +   G   L 
Sbjct: 158 VTEADESDGSFL--KLSPTIAVVTNMDPEHMNHYGTFDAVREAFRGFVSKIPFYGLAVLC 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----- 281
            D     LL  +   +  K + ++G S   D Q    +Q    +  EV    +       
Sbjct: 216 GDHPEVSLLAEE---MLDKRVITYGLSDQVDLQAVHIRQEGIVTHFEVIQHDRHHGRESR 272

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +  +  G H   N L  L +   L    +  ++AL+ F    G  +R+     +  
Sbjct: 273 SLGTIQLNMPGCHNVSNTLAALAVAMELAVPWERCVRALAGFG---GVQRRFDLLHQEAA 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------I 390
            T+ID+ Y  +P  + A +  +    P    R +AV         +    H         
Sbjct: 330 ITIIDD-YAHHPVEIAATMEAVRNGYPQQ--RVVAVF-QPHRYSRVLDHMHDFCRCFKNA 385

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL------FIQSSLVDG 444
           D+  V  +Y        G         L   I  H S  +  L         +   L   
Sbjct: 386 DVVLVDEIYRAGEQPPEGPLGEQGAIVLVEGIRRHSSAQVALLADDARWGLDLGGQLKPN 445

Query: 445 DVVVVKSSNSC 455
           DVVV   +   
Sbjct: 446 DVVVFLGAGDI 456


>gi|260557901|ref|ZP_05830114.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
 gi|260408692|gb|EEX01997.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
          Length = 482

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 53/426 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I H  +  K A ++VV+T +      +       IP+    ++LG L +          
Sbjct: 71  YIGHEAENIKNANVLVVSTAIDPENPEVKAAIEQRIPIVRRAEMLGELMRYR-------- 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + 
Sbjct: 123 -HGIAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P  A++T I   H+  +    +++     +    L   G   
Sbjct: 177 EADESDASFL-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAV 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD+    +  +      + + ++G +++ D +    +Q   +S   V  +G+  + +
Sbjct: 232 VCGDDANIREILPRV----GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRL 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLI 342
             +  G H   N L  +G+ +      +   +AL  F     R +      L +G   L+
Sbjct: 288 TINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLV 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---- 398
           D+ Y  +P  ++A I    Q   H + R + +          ++  + D  EVLS     
Sbjct: 348 DD-YGHHPKEVEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCYDDFIEVLSQVDQL 402

Query: 399 -----YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVK 450
                Y      + G     L  ++     V     + ++G L   +Q+ L   D+++ +
Sbjct: 403 LLLEVYPAGEKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQNVLQPNDLLLTQ 462

Query: 451 SSNSCG 456
            + + G
Sbjct: 463 GAGNVG 468


>gi|238786723|ref|ZP_04630524.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238725091|gb|EEQ16730.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 491

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 136/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVQIASYRQDGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 D  ++AL+ F     R              +    ++ + Y  +P  + A +  
Sbjct: 306 EEGIADDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSVMLVDDYGHHPTEVDATVKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 366 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 421

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        + +   +   L   D+++V+ + + G  ++   L E
Sbjct: 422 SRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGNDLILVQGAGNIG--KVARKLAE 477


>gi|219870392|ref|YP_002474767.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
 gi|254766005|sp|B8F3B7|MURC_HAEPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219690596|gb|ACL31819.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
          Length = 475

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 146/438 (33%), Gaps = 51/438 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV ++ +  S   +       IPV     +L  +
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQRAQMLAEI 114

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IAI G+ GKTTT  M+++  +            N  +        
Sbjct: 115 MRFR---------HGIAIAGTHGKTTTTAMISMIYTEAGLD---PTFVNGGLVKSAGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++        
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     +  K      + + S+G S+ AD+++  ++Q   Q    V
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G+ +E++ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPTGERIEILLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +      ++ + Y  +P  +   I    Q       R + V          ++    D  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQ--GWENKRVVMVF--QPHRYSRTRDLFDDFV 389

Query: 394 EVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLV 442
           +VLS          Y      + G     L  ++     V          L   +   + 
Sbjct: 390 QVLSQVDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQIIQ 449

Query: 443 DGDVVVVKSSNSC-GFYR 459
           DGD+++ + + +     R
Sbjct: 450 DGDLILAQGAGNVSKLSR 467


>gi|315122420|ref|YP_004062909.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495822|gb|ADR52421.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 475

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 150/400 (37%), Gaps = 49/400 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132
             +    +IP+    ++L  L +             I+++G+ GKTTT  ++   L    
Sbjct: 83  CVAARERNIPIIYRSEMLAGLMRAR---------KSISVSGTHGKTTTTSLIAALLEQGN 133

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T    G  N++     T AR+    ++ + E   S    I+     +   I V+T I
Sbjct: 134 LDPTVINGGIVNSY----GTNARIGTG-EWIVVEADESDGTFIK-----LPSDIVVVTNI 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL  +S  + I +A  +  + +   G   +  D      L A+      + I ++G+
Sbjct: 184 DPEHLDYYSDFDAIRAAFYKFIDNVPFYGFAVVCLDHPEILSLVARIQN---RKIITYGQ 240

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              AD      ++ S +S  +V LQG       +  ++V   IG +   N    + I   
Sbjct: 241 HPQADVCYSNIRKYSGRSIFDVTLQGSLTPTPIEIKDLVLPLIGNYNISNASAAIAIAHR 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +   K L+ F    G  +R+          + D+ Y  +P  + A +S + QI  
Sbjct: 301 LGLSSEDIAKGLAGFS---GIKRRFTLIGIWNDVHIFDD-YGHHPVEISAVLSAVRQI-- 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI--------DLAEVLSLYNISHVWLSGFHVLALKDA 417
              G+ IA+         LS  F          D   +  +Y      +SGF    L   
Sbjct: 355 -CPGKVIAI-HQPHRYTRLSTLFDQFSKCFVDSDTVLISPVYAAGEKVISGFSSQELVQK 412

Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  S H   +Y ++ D L   I   +  GD ++   + + 
Sbjct: 413 IKESGHPEAYYLDSFDHLVSKILDIVEPGDFIIFFGAGNI 452


>gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
 gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
          Length = 481

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 176/496 (35%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +  +  FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYHILSQRYPT-ALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQNGRTHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  +   ++ +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLL---MKNSRAVVI 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +  DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQEHDFYGSQSSNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGILLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         +A+ + +   I+  V      +       +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E++P
Sbjct: 459 C---YQIVQGKKEDYP 471


>gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 160/431 (37%), Gaps = 56/431 (12%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV           VA   +  IPV    ++L  L +L            IAI G  
Sbjct: 64  GAEVVVTSSAIDSRNPEVAEAHANHIPVIQRAEMLAELMRLKYG---------IAIAGMH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L+  +     I      +    + AR+     + + E   S    ++ 
Sbjct: 115 GKTTTTSMVAAVLAGGELDPTVI--VGGRVDAMGSNARLGKSH-YLVAEADESDRSFLK- 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +    AV+T I   H+  +  +E++     E  + +   G +    D+     +  
Sbjct: 171 ----LWFIHAVVTNIDREHMDTYHDMEDVERTFVEFMDRVPFYGMVVACNDNEPLRAILP 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ------SWMEVQLQGKSM-EVVHHGIGY 290
           +      + I ++G ++ +DF +R     SEQ      +   V+ +GKS+ E +    G 
Sbjct: 227 RVR----RRIVTYGTTEGSDFLIRCVPCDSEQLLLGFLNRFSVEYRGKSLGEFLLRVPGL 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N    + I   L    D    AL+ F   +   +R++        ++ID+ Y  +P
Sbjct: 283 HNVRNATAAIAIGVGLDIPADKIRAALAEFRGVD---RRFQLKGKANDISVIDD-YGHHP 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNI 401
             ++A ++   Q       R I V+         ++    + A          +L +Y  
Sbjct: 339 TEIRATLAAAKQ----CGFRHIHVVFQ-PHRYTRTRDLMDEFASSFGDADSLYLLDIYPA 393

Query: 402 SHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           S   + G +  AL   +         Y+++     +   ++   GD+++   + +    +
Sbjct: 394 SEQPIEGVNTEALARRITEVSGRATFYAKSFQVAAIMAATAAEPGDMILTLGAGNV--SQ 451

Query: 460 LINLLLEEFPA 470
           L   +LE   A
Sbjct: 452 LGPQILERLSA 462


>gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
 gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
          Length = 494

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 142/345 (41%), Gaps = 21/345 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
               IIAITGS GKT+ K  +   L      YA   S N + G+   + + +    +  I
Sbjct: 162 QNLKIIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVADINQNINATHEIYI 221

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G   +G+I+ +  L++ H AVI  I  AH+  F  IE     K E+      T   F
Sbjct: 222 AEAGARQVGDIKEIAELLQHHYAVIGKIGHAHIEYFKNIETTTKTKFELLYSTRLT-HAF 280

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  D+S+  +L  +  A  +K I ++        +L+  +   E++   ++L    +   
Sbjct: 281 VQKDNSYANVLPPQFEA-NMKKIVAYPP------KLKDIESTLEKTSFSLELDSVFVPFT 333

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+ + + I   L  D++   KA++   P   R +R   A       +ID+
Sbjct: 334 CKILGRFNIDNIAVAIMIAKTLGMDINALQKAVAKLTPIPHRLQRIDTAQK----VIIDD 389

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   M  AI    +++    GR+I V   + E  E S   +I+LA+ +        
Sbjct: 390 SFNGNLEGMSEAI----RLASLHNGRKIIVTPGLVEHDEAS---NIELAQKIDKV-FDIA 441

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G     + D    +      +    L   +  S    D+V+ 
Sbjct: 442 IITGDLNAKILDTHITTPQKIILKDKTKLEEILAESGKQNDLVLF 486


>gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
          Length = 464

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 161/437 (36%), Gaps = 49/437 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           + GHD     V +   +VV +T +  +   +   V   +  +    +  + A L      
Sbjct: 54  FVGHD--AANVPENCDVVVASTAIPDTNPEI---VAARERGIEVWQRAHMLAELGRGLKT 108

Query: 111 IAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +A  G+ GKTTT  ML  A+ ++    T+   G  + +     +        ++ + E  
Sbjct: 109 LAAAGTHGKTTTSSMLATAIDALGLDPTFVVGGMVDAYKTNAKSGTG-----EYYVVEAD 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      + P++A++T + P HL     GI+EI    A+    +   G   +  
Sbjct: 164 ESDGSFL-----NLSPYVALVTNVEPDHLDHYTGGIDEIRDTFAKFMSSVPDEGACVVFG 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH- 285
           DD     +   S     K +Y++G  +  D  +  +      S  ++ +   S +     
Sbjct: 219 DDPELVRIARASA----KRVYTYGLGEGNDIVVSGYSTKGISSTFDLSMPDGSNVTCTLK 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A N    LG+V  L  DV  A + ++ +    G  +R+         T++D+ 
Sbjct: 275 KNPGLHNALNAAGILGVVFALGLDVAAAAEGIADYT---GVRRRFDLVGEAAGVTVVDD- 330

Query: 346 YNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEV 395
           Y  +P  +KA +          V +   PH   R  A L D     E  ++F   D+  +
Sbjct: 331 YAHHPTEIKATLSAAAGLDFKRVFALFQPHRYSR-TASLTD-----EFGKAFADADVLRI 384

Query: 396 LSLYNISHVWLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           + +Y      + G     + D   A      V Y    D     +   L  GD++    +
Sbjct: 385 MDVYPAGEAPIEGVSGKLIADAVEAFGAPTDVAYLPDKDEAAARVLEELQPGDILFTMGA 444

Query: 453 NSCGFYRLINLLLEEFP 469
                 +L   ++EE  
Sbjct: 445 GDV--TKLGPAIVEELK 459


>gi|310765081|gb|ADP10031.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia sp. Ejp617]
          Length = 491

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 138/412 (33%), Gaps = 45/412 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  M++   + 
Sbjct: 93  PEVVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +              + I E   S    +      ++P +A++T I
Sbjct: 144 GGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+       E +          L   G   L  DD+    L  +      + I ++G
Sbjct: 196 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPRV----GRQITTYG 251

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  + Q   Q    +    K + +V  +  G H A N    + + +    + 
Sbjct: 252 FSEDADVRVDNYHQQGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAVAVATEENIED 311

Query: 311 DTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  + AL  F     R           +       ++ + Y  +P  +   I       P
Sbjct: 312 EDILNALESFQGTGRRFDFLGEYPLALSNGSAGTAMLVDDYGHHPTEVDVTIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--ALPR 420
                 + +          ++  + D A VLS  ++     V+ +G   +A  D  AL R
Sbjct: 372 DKN--LVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIAGADSRALCR 427

Query: 421 SIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +I              D +   +   L   D+++V+ + + G  R+   L E
Sbjct: 428 TIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGNVG--RIARTLAE 477


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 158/416 (37%), Gaps = 47/416 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +    SL I +    + LG L        +    T IAI+G+ GKTTT  M
Sbjct: 75  AAIADDNPELLKAKSLGIKLLTRAEALGML--------MSEYNTSIAISGTHGKTTTTSM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ L++ KK        +  I V   L+ +  ++  G  E  ++   E       +RP 
Sbjct: 127 VSLILNNAKK--------DPTILVGGNLSDINGNLKIGKSEYFVTEACEYMDSFLNLRPK 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGI 244
           + +I  I   HL  F  IE IA +     E + K G + + YD + F      K+    +
Sbjct: 179 VELILNIDSDHLDYFDDIEHIAKSFRAFAELVPKDG-LVIGYDANPFV-----KAALKNV 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +FG S+ +D+     +   +   S+     +     V     G H  QN L     
Sbjct: 233 SNVVTFGFSRGSDYVAEDIEFDHQGLPSFKICNGENVVANVKLKIPGEHNIQNALAAAAC 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D       L+ F    G  +R+      G    + + Y  +P  ++A +    +
Sbjct: 293 THTLGVDGSDIENTLNEFS---GINRRFDIVGMIGGSVKLVDDYAHHPTEIEATLDAAKK 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVLA 413
           +  +   R   +          +++   D A  LS  +I   + ++ +           +
Sbjct: 350 MKHN---RLWCLF--QPHTYTRTKALFSDFAPALSKADIIVMNEIYAAREININKLSAKS 404

Query: 414 LKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + + + +      V++ E M+ +  F+  +L   D+V+   +     ++   LL+E
Sbjct: 405 IVEDIKKRFPEKEVYFFEDMEDMAGFVYENLKINDLVITMGAGDI--FKAGELLME 458


>gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 508

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 164/488 (33%), Gaps = 52/488 (10%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++++ I     I       V  I  DSR + P + F   +        ++  A  K
Sbjct: 1   MKLTEIIKKIPELKLIKGDGDLDVGYIWADSRKLKPNDVFVLPEDKAETIESYLQMAYDK 60

Query: 64  GAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALN---KLAVAARLRSKATIIAITGSVGK 119
           G  +V+V+   +        P +   +D LG ++      +      K  II ITG+ GK
Sbjct: 61  GVKVVLVSKRNLKLKNLDLFPTILESEDALGDVHGKMASQLLGNPSKKLKIIGITGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIF 165
           T+   +L      +KK  A IG+    I   +               L R  +D      
Sbjct: 121 TSLTFILFHIAKKLKKKVALIGTVQIQILDRILESGYTTPDASSLNLLLREMLDEGVEYV 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE----KTG 221
            + +S  G        +    A  T +   HL     +E+   +K +IF+ LE    K  
Sbjct: 181 FMEISSHGLKLGRVAGIEITCAGFTNLTQDHLDFHESMEDYFESKFKIFQLLEQSSVKNK 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D SF + +  +     +KT   +   K+ +F     K     S      + K++
Sbjct: 241 FGLVAGDVSFGDRMIQRIRESKLKTPI-YILGKSGEFHYSNTKLSLLGSEYRFHKKEKNL 299

Query: 282 EVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             +       + +G     N    + I   L    D  + A+       G   R++    
Sbjct: 300 PFIEVRSIRTNLLGNFNVFNTAFAMSIAYELGFPWDEVVTAIEEIPTVPG---RFQVIPY 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                +    Y   P +++  +    +I P      I + G   +     +     +AE 
Sbjct: 357 PDKTRIAVVDYAHTPDALENILKSCVEIRPKQ---LICLFGCGGDRDRTKRPQMAKIAET 413

Query: 396 LSLYNISHVWLSG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQS--SLVDGDV 446
           L+      V+L+          ++ D +       +   E +    + IQ   SL++ D 
Sbjct: 414 LA----DFVFLTSDNPRTEDPESILDEIESGFSRGFKRYEKITDRRVAIQRAVSLLEKDG 469

Query: 447 VVV---KS 451
           ++V   K 
Sbjct: 470 ILVVAGKG 477


>gi|229586496|ref|YP_002844997.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia africae ESF-5]
 gi|259509780|sp|C3PMU4|MURC_RICAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|228021546|gb|ACP53254.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia africae ESF-5]
          Length = 485

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 134/397 (33%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    D+L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRADMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I    +        ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L      +  + I ++G  S++
Sbjct: 194 LDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDD---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNNASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  L   F       D+  +  +Y      + G     L D + + 
Sbjct: 367 GKVIAIFQPHRYSRMQYLFDDFMFCFADADILYITDIYAAGENPIEGITGRNLVDKITKR 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAELDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|83953981|ref|ZP_00962702.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841926|gb|EAP81095.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
          Length = 471

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 151/435 (34%), Gaps = 54/435 (12%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
             A  +GA +VV+++ +      L       +P+    ++L  L +L            I
Sbjct: 64  EAANIEGAAVVVISSAIKPGNPELDAARVAGLPIVRRAEMLAELMRLKSN---------I 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKTTT  M+   L          G  +  +     +     +   G  E  +  
Sbjct: 115 AVAGTHGKTTTTTMVAELL--------VKGGIDPTVVNGGIIHAYGSNARMGQGEWMVVE 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E     + +   IA++T I P H+ ++   + +     +    +   G      D   
Sbjct: 167 ADESDGTFNRLPATIAIVTNIDPEHMEHWGDFDTLRKGFLDFVSNIPFYGLAVCCIDHPE 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGI 288
            + L  K   +  + + ++G +  AD +       +  +  ++  Q + +   +      
Sbjct: 227 VQALVGK---ITDRRVMTYGFNTQADVRAVNLHYKAGVAHFDIMFQTEGITIKDCSLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N +  + +   L    +    AL+ F       +R+         T+ID+ Y  
Sbjct: 284 GDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVN---RRFTKVGEVDGVTIIDD-YGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLY 399
           +P  + A +    Q +   EGR IAV        L    E  E    F+  D+  +  +Y
Sbjct: 340 HPVEITAVLKAARQAT---EGRVIAVHQPHRYSRLHHHFE--EFCACFNDADVVGIAEVY 394

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC-- 455
                 + G     L   L R  H H    ++ D L   ++     GD+VV   + +   
Sbjct: 395 AAGEAPIEGAGRDDLVAGLIRHGHRHARAVQSEDDLARLVREQAGPGDMVVCLGAGTIST 454

Query: 456 ---GFYRLINLLLEE 467
                   +  L +E
Sbjct: 455 WANALPAALEALKKE 469


>gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 485

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 40/409 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +   L IPV    D+LG L +          +T + I G+ GKT+T  M
Sbjct: 82  AAIPQDNPELVAARELGIPVIRRSDLLGELME---------GSTQVLIAGTHGKTSTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+ +           +    +   L +   +   G  +  ++   E        +P+
Sbjct: 133 AVVAMQAAG--------MDPSFAIGGQLNKAGTNAHQGTGDAFVAEADESDASLLRYKPN 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGI 244
           IAVIT I P HL  F   E       +  + L    ++ +  DD    +L  K H     
Sbjct: 185 IAVITNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKIHEKHKD 244

Query: 245 KTIYSFGK-SKNADF------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +  +G  + +A++       +  ++     +   + + G+  EVV    G HM  N  
Sbjct: 245 IKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAA 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNANPASMKAA 356
             L    I   D+      +S F     R + +       F  + + + Y  +P  + A 
Sbjct: 305 AALTAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAV 364

Query: 357 ISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           ++     +   G+GR + +      +   + +F  + A          VL +Y      +
Sbjct: 365 LTAARAKLQARGQGRLLVIF--QPHLYSRTINFVDEFAAALSLADEAIVLDIYGAREKPV 422

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            G     + D +  +I  H+      +   +      GD+V+   + S 
Sbjct: 423 EGVDSRIITDKM--TIPAHFEPDFSHVPEAVADLAAPGDLVITMGAGSV 469


>gi|84625260|ref|YP_452632.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575298|ref|YP_001912227.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|109892757|sp|Q2NZB9|MURC_XANOM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892758|sp|Q5GW42|MURC_XANOR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620442|sp|B2SNZ4|MURC_XANOP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84369200|dbj|BAE70358.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188519750|gb|ACD57695.1| UDP-N-acetylmuramate--alanine ligase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 477

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/403 (20%), Positives = 138/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      I +A AE  + L   G   L  DD     L  ++     + + S
Sbjct: 190 NIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLLCIDDPEVAALAGRTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              T  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 APGTIARALENF---AGIGRRFNDLGEVTTSTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             +  L   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIASLAEVLPDVLQDGDLLLMMGAGDIG 461


>gi|148828299|ref|YP_001293052.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
 gi|166224694|sp|A5UIR3|MURC_HAEIG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148719541|gb|ABR00669.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
          Length = 475

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 149/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAAEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVFCPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++  L  +       +
Sbjct: 346 YGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSLVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
 gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
          Length = 492

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 163/481 (33%), Gaps = 61/481 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL+ +    +    Q  VN +  DSR + P   F  + G   D H +   AV+ GA 
Sbjct: 6   LKDLLEGVGYKCLQGDDQVLVNDVVYDSRRVRPGCVFVCLIGSAVDSHQYAAQAVEAGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124
            VV +  +  + G+L      V+D   A+  ++ A      +K   + ITG+ GKTTT  
Sbjct: 66  AVVASRQLELAKGTL----VLVEDTRKAMAYMSAALFGHPAAKLKTVGITGTKGKTTTAC 121

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVD-VDFGIFELG 168
           M+   L         IG+    I                V   L +M  +     + E  
Sbjct: 122 MIKTILEKGGIKTGVIGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMVEEGCQCAVMEAS 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              LG     T  +     V T  +P H+     S +EE A+ K  +F+  +      +N
Sbjct: 182 S--LGLKWHRTDGLVFDYGVFTNFSPDHIGENEHSCLEEYAACKGLLFQSCKLG---LVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRK----WKQCSEQSWMEVQLQGKSM 281
            DD   E +           + +FG S   A  +       ++     +  +V      +
Sbjct: 237 IDDPACETILKDHTC----ELETFGFSNPQAQLKGSNEGLIYRPGYLGAHFDVS-GAMKL 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G   A N +  + +           +      +  + +G+     +   +  L
Sbjct: 292 SVDVDIPGKFSAYNAIAAIAVCRHFPVSEQNILDG---LNEVKVKGRVEPVKVPGNYTLL 348

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID  Y  N  SM+  ++ L +  PH   R + + G     G  ++S   ++ EV      
Sbjct: 349 ID--YAHNAVSMENILTTLREYQPH---RLVCMFGA---GGNRAKSRRYEMGEVSGRLAD 400

Query: 402 SHVWLSGFH-----VLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V           +  ++D                       +   +  + D+VV+  K
Sbjct: 401 LTVITEDNSRFENVMDIIQDIQTGMAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGK 460

Query: 451 S 451
            
Sbjct: 461 G 461


>gi|118594413|ref|ZP_01551760.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
 gi|118440191|gb|EAV46818.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
          Length = 457

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 39/403 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   +      +IP+    ++L  L +           T IA+ G+ GKT+T  +L
Sbjct: 73  AITKNNIEIKEGKDKNIPIIARAEMLSELMRF---------KTGIAVAGTHGKTSTTSLL 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS         G+ +    +   +  M  +   G  ++ +    E       + P  
Sbjct: 124 ASILSQ--------GNLDPTFVIGGRINSMKANAKLGAGDIFVVEADESDASFLHLNPIN 175

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++T I   HL       E + +   +    +     +FL  DD     +        ++
Sbjct: 176 TIVTNIDRDHLEAYQGDFERLKATYLDFIHQVPFYSNVFLCVDDDEINKIIPDI----MR 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I ++G S  A  Q         +    V     +    ++  +  G H   N L  + +
Sbjct: 232 PIVTYGLSAQAQIQATSIVHFENKMNFVVHDKYYKKIKFDININLPGIHYVNNTLAAIAV 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +    KAL  F     R   YR         ++ + Y  +P  ++A +    +
Sbjct: 292 GLEFGVSIKNIQKALRDFEGVSRRYDVYRGIYKNNKNFIVVDDYGHHPTEIRAVLEATKK 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLA 413
             P+ E   +A++         ++  + +   V           +Y+     + G     
Sbjct: 352 GFPNKE---VALVFQ-PHRYSRTKDCYEEFLSVFNIPQKLFLFDIYSAGEDHIPGISSEK 407

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           L   + RS + ++          I  ++ +  ++++  + S G
Sbjct: 408 LLKDIKRS-NAYHLPNGKRANKIILDNIAEDSIILIMGAGSIG 449


>gi|294815699|ref|ZP_06774342.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328298|gb|EFG09941.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 529

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 154/419 (36%), Gaps = 43/419 (10%)

Query: 53  GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV      +   +     LS+PV    D L +L          +
Sbjct: 119 GH--AAGHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRSDALASL---------MT 167

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML +AL ++          +    +   LA    +   G  +
Sbjct: 168 GLRAIAVAGTHGKTTTTSMLAVALGALG--------LDPSYAIGGDLAGPGSNAHHGDGD 219

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E         P +A++  +   H +N++ ++EI  +       +   GT+ + 
Sbjct: 220 IFVAEADESDRSFQKYAPEVAIVLNVELDHHANYASMDEIYESFEIFAGRIVPGGTLVIA 279

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      L ++        I ++G+S+ AD ++++       S + V L G+ +     
Sbjct: 280 ADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVS 339

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L   + L   VD    AL  +    G G+R +     G   +I +SY
Sbjct: 340 VPGRHYAHNAVAALAAGAALGIPVDELATALGAYT---GVGRRLQLKGEAGGVQVI-DSY 395

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +   +   + R + V      +   +Q    ++ + L+L + S V  
Sbjct: 396 AHHPTEMTADLEAMRAAAA--DSRLLVVF--QPHLFSRTQELGTEMGQALALADASLVLD 451

Query: 405 -------WLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   + G      +  A      V  +  M  +   +      GD+V+   +   
Sbjct: 452 IYPAREDPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPGDLVLTMGAGDV 510


>gi|157803465|ref|YP_001492014.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
 gi|166224723|sp|A8EXZ6|MURC_RICCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157784728|gb|ABV73229.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
          Length = 477

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 141/411 (34%), Gaps = 44/411 (10%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  IP+    ++L  L +L            +A++GS GKTTT  ++     +   
Sbjct: 90  QEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL 140

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
              C    N  I    +        ++ I E   S    I      +   IA+IT I P 
Sbjct: 141 ---CPTVINGGIINNRSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPE 192

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SK 254
           HL  +     + SA       L   G      D      L      +  + I ++G  S 
Sbjct: 193 HLDYYKDFATLISAFRSFIINLPFYGFAVCCIDHKIVRKLVDD---ITERKIVTYGIDSA 249

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILT 307
           +A             S  +V++      G ++  ++     G H   N L  + +   L 
Sbjct: 250 DAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPIPGRHNILNSLAAIAVGIELD 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+   
Sbjct: 310 FGIKAIKNGFNNFKGVK---RRFTKVAEYNMASIIDD-YAHHPEEIKATLATAKNIANKQ 365

Query: 368 EGRRIAVL-----GDMCEMGELSQSFH--IDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            G+ IA+        M  + +         D+  +  +Y      + G    +L D + +
Sbjct: 366 NGKVIAIFQPHRYSRMQHLFDDFMLCFADADILYITDIYAAGENPIEGITGQSLVDKITK 425

Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +      ++  T+D     I  + V GDV+++  + +       N L ++F
Sbjct: 426 NKYHDQANFLATLDDAVGVIIDNAVSGDVIIMMGAGNI--SSFANELPKKF 474


>gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 35/379 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+   +IAI G+ GKTTT  M+   L           +YN  I V   + ++  +   G
Sbjct: 98  MRNFKNVIAIAGTHGKTTTTSMIGYILKKA--------NYNPTILVGAFVKQLGGNFVIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G +
Sbjct: 150 SKDYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFL 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-- 281
             N DD   + + +K H      +      + AD               +V+     +  
Sbjct: 210 VANCDDKNVKDIISKFHT----QVVCISTKEKADIFADNISCNDGYYEFDVKNNNNEILA 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G+H   N L    + S L  +  T  +ALS F    G  +R           L
Sbjct: 266 HIKLNIPGFHNVYNALAAFAVASKLRVESLTIEQALSEF---CGASRRLEKVGEFNGIYL 322

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            D+ Y  +P  +KA ++ L +           PH   R   +L +  E  +L+       
Sbjct: 323 YDD-YAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKLADK----- 376

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             V  +Y      + G     L   L    I   Y    D +  ++      GD++    
Sbjct: 377 VIVTDVYAAREKNIFGITSEKLYLKLKEIGIDCEYISNFDDIACYVVKEAKKGDIIATIG 436

Query: 452 SNSCGFYRLINLLLEEFPA 470
           +      + I+++L++ P 
Sbjct: 437 AGDVN--KCIDIILKKAPV 453


>gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 485

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 40/409 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +   L IPV    D+LG L +          +T + I G+ GKT+T  M
Sbjct: 82  AAIPQDNPELVAARELGIPVIRRSDLLGELME---------GSTQVLIAGTHGKTSTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+ +           +    +   L +   +   G  +  ++   E        +P+
Sbjct: 133 AVVAMQAAG--------MDPSFAIGGQLNKAGTNAHQGTGDAFVAEADESDASLLRYKPN 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGI 244
           IAVIT I P HL  F   E       +  + L    ++ +  DD    +L  K H     
Sbjct: 185 IAVITNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKIHEKHKD 244

Query: 245 KTIYSFGK-SKNADF------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +  +G  + +A++       +  ++     +   + + G+  EVV    G HM  N  
Sbjct: 245 IKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAA 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNANPASMKAA 356
             L    I   D+      +S F     R + +       F  + + + Y  +P  + A 
Sbjct: 305 AALTAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAV 364

Query: 357 ISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           ++     +   G+GR + +      +   + +F  + A          VL +Y      +
Sbjct: 365 LTAARAKLQARGQGRLLVIF--QPHLYSRTINFVDEFAAALSLADEAIVLDIYGAREKPV 422

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            G     + D +  +I  H+      +   +      GD+V+   + S 
Sbjct: 423 EGVDSRIITDKM--TIPAHFEPDFSHVPEAVADLAAPGDLVITMGAGSV 469


>gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9605]
 gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp.
           CC9605]
          Length = 501

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 147/460 (31%), Gaps = 54/460 (11%)

Query: 22  VPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDF-ILHAVQKGAGLVVVNTDMVA 76
           VP G VN     I+ DSR + P   F  + G   DG  F         A  V+      A
Sbjct: 16  VPPGLVNPGLGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALEAGAAAAVIGAEAAAA 75

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT---GSVGKTTTKEMLTIALSSI 133
                  PV  + + +        AA        +A+    G+ GKTTT  ++    +S 
Sbjct: 76  QPPGADAPVVVIQEPVARRIGEIAAAFWDHPCRCMALIGVTGTNGKTTTTHLIEHLAASA 135

Query: 134 KKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRF 177
            ++    G+  N        A                           E+    L + R 
Sbjct: 136 GQSVGLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAGCGLAAMEVSSHALAQQR- 194

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDSFFEL 234
                R   AV T +   HL   + +E+   AKA +F     L       +N DD + E 
Sbjct: 195 -VAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGARSVVNSDDPWGER 253

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  +  A   ++     +  +A+  +   +  +      +             +G     
Sbjct: 254 LAERLGAACWRSSL---EDPSAELHMSDLQMTAAGVEGRLISPVGEGRFRSPLLGRFNLM 310

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASM 353
           N+L  +G++      +   ++A+  F    GR +R     ++      +   Y   P  +
Sbjct: 311 NLLQAIGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAANLPPVLVDYAHTPDGL 370

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               + LS   P   GR I V G     G+  +     +AE+ +      V ++  +   
Sbjct: 371 D---NALSAARPFCAGRLICVFGC---GGDRDRGKRPQMAEIAARL-ADRVVVTSDNPR- 422

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                        +E    +   + + +  G  ++V+   
Sbjct: 423 -------------TEDPRQILDDVVAGIPPGSDLLVEGDR 449


>gi|325578820|ref|ZP_08148867.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159644|gb|EGC71776.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 475

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 163/482 (33%), Gaps = 61/482 (12%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + + +      I      +G+    R        F   +  +            +GA +V
Sbjct: 34  IAEILLNEGYDISGSDIADGVVT-QRLAQAGAKIFIGHQAENV-----------QGASVV 81

Query: 69  VVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           VV++ +      L       IPV     +L  + +             IA+ G+ GKTTT
Sbjct: 82  VVSSAIHEDNPELIAAKQNRIPVIQRAQMLAEIMRFR---------HGIAVAGTHGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+++  +  K         N  +              + I E   S    +      +
Sbjct: 133 TAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFLH-----L 184

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P ++V+T I P H+  +    E++ +   +    L   G   +  DD+    L  +   
Sbjct: 185 QPMVSVVTNIEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDTVLMELVPQV-- 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTL 300
              + + ++G S++AD+ +  ++Q   Q    V    G+ + V+ +  G H A N    L
Sbjct: 243 --GRQVLTYGFSEHADYHIEDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAAL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +        +  ++AL+ F     R  +    +       + + Y  +P  +   I   
Sbjct: 301 AVAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAA 360

Query: 361 SQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +            PH   R   +  D  ++     +       +L +Y      + G  
Sbjct: 361 REGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IMLDVYAAGETPIVGAD 415

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             AL  ++     V        + L   +   + DGD+++ + + S    ++   L E +
Sbjct: 416 SKALCRSIRNLGKVDPILVSDTEQLGDVLDQIIQDGDLILAQGAGSV--SKISRGLAECW 473

Query: 469 PA 470
            A
Sbjct: 474 KA 475


>gi|329888140|ref|ZP_08266738.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
 gi|328846696|gb|EGF96258.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
          Length = 481

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 162/434 (37%), Gaps = 61/434 (14%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD     V +G   VV +T + ++   L       IP+    ++L  L +L        
Sbjct: 63  GHD--AAHVTEGVSAVVYSTAVKSTNPELAVARERRIPLVRRAEMLAELMRLQF------ 114

Query: 107 KATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               I + G+ GKTTT  M+   L +  +  T    G  N +            + D+ +
Sbjct: 115 ---SIGVGGTHGKTTTTSMVAALLDAGSLDPTVVNGGIINAYGTNAKV-----GEGDWMV 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S    +R     ++  +A+IT I P HL ++   + +  A  +  E +   G   
Sbjct: 167 VEADESDGSFLR-----LKCTVAIITNIDPEHLDHYGDFDAVKKAFGDFIEDIPFYGFGV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--- 281
           +  D    + L A+   +  + + ++G +  A  +    +   + S  +V +QG+ M   
Sbjct: 222 VCLDHPEVQKLAAQ---IDNRRLVTYGLNPQAMVRADNVRMDPDGSRFDVVIQGQGMAAL 278

Query: 282 -------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                   +     G+H   N L  + +   +  D D     L+ F   +   +R+    
Sbjct: 279 GEPARIENLHLPMAGWHNVSNALAAIAVAREIGVDDDAIRTGLAGFGGVK---RRFTTTG 335

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI--SPHGEGRRIAV--------LGDMCEMGEL 384
                 +ID+ Y  +P  + A +    Q+  +    GR IAV        L D+ E  + 
Sbjct: 336 VAHGVRVIDD-YGHHPVEIAAVLKAARQVVQNADNTGRVIAVVQPHRYTRLRDLME--DF 392

Query: 385 SQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL 441
           S  F   D   V  +Y      + G    AL + + R  H H +  E    L   I+   
Sbjct: 393 STCFSDADSVLVADVYPAGEQPIEGVDKHALVEGVRRYGHRHVAALENAAVLPRVIKDEA 452

Query: 442 VDGDVVVVKSSNSC 455
             GD+VV+  +   
Sbjct: 453 KPGDLVVLLGAGDI 466


>gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
 gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
          Length = 472

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 153/455 (33%), Gaps = 52/455 (11%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           G  +GI+ DSRS+ P   F  +      G  F+  AV+ GA  +V            S  
Sbjct: 12  GQASGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHVDHSQI 68

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +             +          +  +TG+ GKT+  +           T A +G+  
Sbjct: 69  IICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128

Query: 145 NHIGVPLTLARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIA 187
             I    TL            E                 +  S  G  +   + V+   A
Sbjct: 129 A-IVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASAA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
             T ++  HL     +E+  + K ++F E L   G   LN D   +  L+  +     + 
Sbjct: 188 AFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAG---RN 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I ++G     D +L + ++ ++   + V++ G+   +     +G     N+L  L IV+ 
Sbjct: 245 IITYGVDTG-DVKLARLERNTQGHNITVKVCGEVIYDGAFPVLGKFQISNLLCALAIVAA 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             +        +       GR +        G   +ID  Y     ++K A++ L     
Sbjct: 304 SGSGHRDV--PIDRLASPRGRMELI------GDRIIID--YAHTSDALKHALTSLK--WH 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               + + V G     G+  +     +  V S Y    V ++  +  +      R   + 
Sbjct: 352 GFPQKTVLVFGC---GGDRDREKRKTMGMVASQY-ADVVIVTDDNPRSENPETIRKEIML 407

Query: 426 YSETM-------DGLFLFIQSSLVDGDVVVV--KS 451
           + E         D +   +  ++ +  V+++  K 
Sbjct: 408 HCENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442


>gi|163732131|ref|ZP_02139577.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
 gi|161394429|gb|EDQ18752.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
          Length = 468

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 135/384 (35%), Gaps = 41/384 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+    ++L  L +L            IA+ G+ GKTTT  M+   L +        G 
Sbjct: 95  LPIVRRAEMLAELMRLKSN---------IAVAGTHGKTTTTTMVATLLDA--------GE 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           ++  +     +     +   G  E  +    E     + +   IA++T I P H+ ++  
Sbjct: 138 FDPTVVNGGIIHAYGSNARKGEGEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWGD 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + +     +    +   G      D    + L  K   +  + + ++G +  AD +   
Sbjct: 198 FDTLRQGFLDFVSNIPFYGVAVCCTDHPEVQALVGK---ITDRRVITYGFNAQADVRAVN 254

Query: 263 WKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +  S  +  +V LQ + +   +      G H   N L  + +   L    +    AL+ 
Sbjct: 255 LRYASGVAHFDVALQAEGIVIEDCSLPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAA 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F       +R+         T+ID+ Y  +P  + A +    Q +   EGR IAV     
Sbjct: 315 FGGVN---RRFTRVGEIDGVTIIDD-YGHHPVEIAAVLKAARQAT---EGRVIAV-HQPH 366

Query: 380 EMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM- 430
               LS  F          D+  +  +Y      + G     L   L R  H H    + 
Sbjct: 367 RYSRLSSLFDDFCACFNDADVVGIAEVYAAGEDPIPGAGRDDLVAGLIRHGHRHARAVVG 426

Query: 431 -DGLFLFIQSSLVDGDVVVVKSSN 453
            D L   ++     GD+VV   + 
Sbjct: 427 EDDLERLVREQTRPGDMVVCLGAG 450


>gi|15604117|ref|NP_220632.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia prowazekii str.
           Madrid E]
 gi|6225734|sp|Q9ZDS8|MURC_RICPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3860809|emb|CAA14709.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE (murC) [Rickettsia prowazekii]
 gi|292571843|gb|ADE29758.1| UDP-N-acetylmuramate--alanineligase [Rickettsia prowazekii Rp22]
          Length = 495

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 149/427 (34%), Gaps = 52/427 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+  A Q  K    VV+++ +  +   +       IP+    ++L  L +L         
Sbjct: 62  FLGQAKQNIKNVSYVVISSAINQNNPEIKEALERKIPIIRRAEMLAELMRL--------- 112

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +      C    N  I    +        ++ I E 
Sbjct: 113 KCSVAVSGSHGKTTTTSLIACLFEAAGL---CPTVINGGIINNKSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    I      +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DESDATFIH-----IPSTIAIITNIDPEHLDYYQDFEILIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQ-----GKSM 281
           D      L      +  + I ++G  S++A             S  +V++      G ++
Sbjct: 225 DHKIVRKLVDD---ITERKIITYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTI 281

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             ++     G H   N L  + +   L   +       + F   +   +R+         
Sbjct: 282 IEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVK---RRFTKVAEYNKA 338

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HID 391
            +ID+ Y  +P  +KA ++    I+    G+ IA+         +   F          D
Sbjct: 339 VIIDD-YAHHPEEIKATLATAKNIANQQNGKVIAIF-QPHRYSRIKYLFDDFMLCFADAD 396

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVV 448
           +  + ++Y      + G    +L D + ++ H    ++   +D +   I  +   GD+++
Sbjct: 397 ILYITNIYAAGETPIEGITGQSLVDKMTQNKHHDKANFLAELDDVVSIIIDNAASGDMII 456

Query: 449 VKSSNSC 455
           +  + + 
Sbjct: 457 MMGAGNI 463


>gi|295094465|emb|CBK83556.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus sp. ART55/1]
          Length = 460

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 135/402 (33%), Gaps = 40/402 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +   +    +IP+     +LG + +             IA++G+ GKTTT  M
Sbjct: 77  AAIHPDNEEFKAAVEKNIPMLTRAQLLGQIMENYKY--------SIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L             +  I V   L  +  ++  G  E  ++   E     H  +P 
Sbjct: 129 LSYILIDAD--------TDPTISVGGILDSIGGNIRVGKSEYFVTEACEYTNSYHAFKPF 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  +   HL  F  I+EIA +         K G + +N D  +++ +          
Sbjct: 181 ISIILNVDADHLDFFKDIDEIAESFHVFATKTPKEGLVIVNGDMKYYDTVVRDLEC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            + +FGK     +     +          + + GK + ++     G H   N L  +   
Sbjct: 237 RVVTFGKGAQNKYSAHNIRFDDFGHPTYTLVVDGKEITDITLKVFGEHNVYNSLSAIAAS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L   +D   +         G  +R+           + + Y  +P  + A +      
Sbjct: 297 LELGISIDVIKQG---LSECVGAERRFEYKGTILDNVRVMDDYAHHPTEIAATLKAAKNT 353

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  +  +   L    H+ +A++ +        +S      L
Sbjct: 354 SYNELWCVFQPHTYSRTYALFDEFVD--ALKVCDHVIVADIYAAREKDTGLVS---AKQL 408

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + +        Y  + D +  ++  +    D+++   + + 
Sbjct: 409 AEKIAETGTDAFYLPSFDDIENYLLKNCKKNDLLITMGAGNV 450


>gi|238650471|ref|YP_002916323.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
 gi|259509781|sp|C4K124|MURC_RICPU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238624569|gb|ACR47275.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
          Length = 485

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 135/397 (34%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    D+L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRADMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I             ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKLTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L  +   +  + I ++G  S++
Sbjct: 194 LDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDE---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNNASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  L   F       D+  +  +Y      + G    +L D + + 
Sbjct: 367 GKVIAIFQPHRYSRMQYLFDDFMLCFADADILYITDIYAAGENPIEGITGRSLVDKITKR 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAELDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|227503281|ref|ZP_03933330.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
 gi|227075784|gb|EEI13747.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
          Length = 487

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 143/428 (33%), Gaps = 45/428 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +    +IP+    D+L AL +           T + + G+ GKT+T  M
Sbjct: 81  AAIPQDNPELVAARGNNIPLIRRSDLLAALMEGH---------TQVLLAGTHGKTSTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              A+             +    +   L R   +   G  E  ++   E         P 
Sbjct: 132 AVSAMQHAG--------LDPSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYSPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGI 244
           IAVIT   P HL  F   +      A+  + +    G + +  +D     +  ++ + GI
Sbjct: 184 IAVITNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGI 243

Query: 245 KTIYSFGKSKNA---------DFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMA 293
             +  +G ++ A              +         +++ L G  +S+       G+HM 
Sbjct: 244 -NVIGYGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLPGVEQSVSYQLQIPGHHMV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  L    +   +  T  + L+ F     R +       QG    + + Y  +P  +
Sbjct: 303 LNSMAALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAHHPTEV 362

Query: 354 KAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
            A +        +    GR IA       +   +  F  + A+         VL +Y   
Sbjct: 363 AAVLRAARAKVAAEGNGGRVIACF--QPHLYSRTMEFDAEFAQALALADAAVVLDIYGAR 420

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              + G     + + +P  + V +          + S    GD+++   + S     +  
Sbjct: 421 EQPVEGITSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDIILTIGAGSITL--VAA 478

Query: 463 LLLEEFPA 470
            +L+E  A
Sbjct: 479 EILDELRA 486


>gi|152992426|ref|YP_001358147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
 gi|151424287|dbj|BAF71790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
          Length = 485

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 136/358 (37%), Gaps = 41/358 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162
                T++ IT S GKT+ K  +   L +  +TYA   S N   GV   +   +P D + 
Sbjct: 149 DMKDLTVVGITASYGKTSIKNYIEHLLKAKYRTYATPRSVNTLGGVMKDINDDLPEDTEV 208

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKT 220
            + E+G    G+I  +T  V P   V+  I PAH+  F  +E I + K EI     L++ 
Sbjct: 209 YVVEMGARGEGDIAEITTFVNPQYVVVGKIGPAHIEYFKTMENIRNTKMEILQSHRLKE- 267

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---------FQLRKWKQCSEQSW 271
                         +   +     K I+ FG  +N D         + ++  +   + + 
Sbjct: 268 ------------AWIHESAMVKPEKNIHIFGTGENLDMKTGLPAPEYLIKDIEATLDATS 315

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +      +      +G   A N+   + +   L    +   + LS     + R +R  
Sbjct: 316 FTLD----GVRYSASILGAFNAMNLAAAVLVAKKLGLSDEEIQQGLSTLKAVDHRLQRI- 370

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              + G   ++D+S+N N   M A+      ++    GR++ +   + E+ +     ++ 
Sbjct: 371 ---DAGGKVILDDSFNGNIDGMMASFD----LASTYAGRKVVITPGLVEVDD---ELNMQ 420

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +A+  +      V ++G    A+         +    +   +   +    + GD+++ 
Sbjct: 421 VAKRANEV-FDLVVVTGDLNYAIFKEHVDPEKLVKLASKSEMESMLVEQTLPGDLILF 477


>gi|260576892|ref|ZP_05844875.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
 gi|259020929|gb|EEW24242.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
          Length = 479

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 133/417 (31%), Gaps = 51/417 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV    ++L  L +L            IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARRRQLPVVRRAEMLAELMRLKSN---------IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L         I     H            + ++ + E   S     R
Sbjct: 120 HGKTTTTTMVATLLDKGGFDPTVINGGVIHAYGS---NARAGEGEWMVVEADESDGSFNR 176

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   IA++T I P H+ ++   E +     +    +   G      D +  + L 
Sbjct: 177 -----LPATIAIVTNIDPEHMEHWGTFENLRKGFYDFVSNIPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME----------VVHH 286
            +   +  + I +FG +  AD +       +  +  +V LQG+  +              
Sbjct: 232 GR---VTDRRIVTFGFNAQADVRAINLTYDAGVAHFDVALQGEGPDDTGKIAVIEGCTLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L        +AL+ F     R  R          T+ID+ Y
Sbjct: 289 MPGDHNVSNALAAIAVARHLGMKKAEIREALAGFAGVNRRFTRVGVV---NGVTIIDD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSL 398
             +P  + A +    Q +    G R+  +        L   F          D+  +  +
Sbjct: 345 GHHPVEIAAVLRAARQATAGTPGARVIAVHQPHRYTRLHSLFDDFCTCFNEADVVAIAEV 404

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
           Y      + G     L   L    H H       D L   ++     GD+VV   + 
Sbjct: 405 YAAGEDPIPGASRDDLVAGLIAHGHRHARAILNEDDLERLVREQARPGDMVVCLGAG 461


>gi|322513884|ref|ZP_08066963.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
 gi|322120283|gb|EFX92230.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 151/439 (34%), Gaps = 54/439 (12%)

Query: 56  FILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VV           V +     IPV     +L  + +          
Sbjct: 67  FIGHQAENIIGASVVVASSAIDDTNPEVKAAKEARIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IAI G+ GKTTT  M+++    + +  T+      N  +              + I 
Sbjct: 119 -HGIAIAGTHGKTTTTAMISMIYTEAQLDPTF-----VNGGLVKSAGKNAHLGASRYLIA 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++V+T I P H+  +    E++ +   +        G   
Sbjct: 173 EADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFLSNSPFYGLAV 227

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEV 283
           +  DD     +  +      + + ++G S  AD+++  ++Q   Q    V    G+ ++V
Sbjct: 228 MCADDETVMEIAPQV----GRQVVTYGFSDKADYRIEDYQQTGFQGHYTVVCPNGERIDV 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + +  G H A N    L +        +  + AL+ F     R  +    +      ++ 
Sbjct: 284 LLNVPGKHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKVMLV 343

Query: 344 ESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P  +   I                 PH   R   +  D  ++     +      
Sbjct: 344 DDYGHHPTEVDVTIKAARSGWEDKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDAL----- 398

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            +L +Y      + G    AL  ++     V        D L   +   + DGD+++ + 
Sbjct: 399 IMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQG 458

Query: 452 SNSCGFYRLINLLLEEFPA 470
           + S    R+   L E + A
Sbjct: 459 AGSV--SRISRGLAESWKA 475


>gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus
           ATCC 19977]
 gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium
           abscessus]
          Length = 490

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 158/423 (37%), Gaps = 46/423 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL  L               + +TG+ GKT+T  M
Sbjct: 82  AAIPKTNPELVEANRRGIPVLLRPVVLADLMA---------GYRTLMVTGTHGKTSTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            Y+    V   L     +   G  ++ ++   E        RP+
Sbjct: 133 LIVALQHCG--------YDPSFAVGGELNEAGTNAHHGSGDVFVAEADESDGSLLQYRPN 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++T I   HL +F  +E  ++   E  E L   G + +  DD     L  ++H  GI+
Sbjct: 185 LIIVTNIEADHLDHFGSVEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHERGIR 244

Query: 246 TIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNM 296
            +  +G +  A+        QLR W+     +  ++QL G+S    +     G HMA N 
Sbjct: 245 -VRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMALNA 303

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +   + + A VD  +  L+ F   EG  +R+    +     + D+ Y  +P  ++  
Sbjct: 304 LAAVVTAAEIGAAVDDVLDGLAGF---EGVRRRFELVGSVESVRVFDD-YAHHPTEVRTV 359

Query: 357 ISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +  +S I +  G GR + V      +   + +F  + A+         VL +Y      L
Sbjct: 360 LQAVSGIVAQQGFGRSVVVF--QPHLYSRTAAFATEFADALSIADLVFVLDVYGAREAPL 417

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
            G     + + +     VHY   +  +   + ++   GD+V+   +         ++  L
Sbjct: 418 PGVTGALIVEQIA-GAPVHYLPDLSTVAQQVAAATAPGDLVITMGAGDVTLQGKEIVRAL 476

Query: 465 LEE 467
              
Sbjct: 477 RAR 479


>gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 512

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 160/481 (33%), Gaps = 53/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L        + +  +  V G+S+ S+ + P + + A+ G    G  +   AV+ GA
Sbjct: 23  TLAELAGEFG---LDVRGEARVTGVSLSSQRVLPGDLYAALPGSRAHGAGYAAGAVEAGA 79

Query: 66  GLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
             V+ +        S G   +PV  V+     L  L+         +  +I +TG+ GKT
Sbjct: 80  VAVLTDAAGAALLESQGLGEVPVLLVEQPRKVLGALSARVYGNPSGRLRLIGVTGTQGKT 139

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----GVPLTLARMP-----------VDVDFGI 164
           TT  +   AL         IG+    I       PLT    P              +   
Sbjct: 140 TTTRLAESALLDSGHRAGVIGTVGTRIGGRDVKTPLTTPEAPDLHGLFARMVEEGTEACA 199

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L   R     V   +AV   +   HL     +E+  +AKA++F          
Sbjct: 200 MEVSSHALVMGR--VDGVVFDVAVFLNLGRDHLDFHETVEDYYAAKADLFTPERAE-LGI 256

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQ-LQGKSME 282
           +N DD     L A++       I ++    + AD++    +   + S   V    G S  
Sbjct: 257 VNIDDEHGRRLAAEATI----PILTYALHDDTADWRATDIELRPDGSSFTVHGPDGLSFP 312

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G +   N L  L  +     D        +      G   R         FT++
Sbjct: 313 AASPLAGDYNVSNTLAALASIHHAYGDETVVRDVATALAKGSGVPGRLERIDEGQPFTVV 372

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++AA+  L    P  E R I V+G   +     +    +++  L+     
Sbjct: 373 VD-YAHKPDAVEAALGTLR---PLTESRLIVVIGAGGDRDTGKRPIMGEISARLA----D 424

Query: 403 HVWLSGFHVL----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           HV ++  +             L      S  V                   GD+VVV  K
Sbjct: 425 HVIVTDDNPRTEDPASIRRQVLAGTTGGSASVEEIGDRRAAIERAIGLAQPGDIVVVAGK 484

Query: 451 S 451
            
Sbjct: 485 G 485


>gi|237729389|ref|ZP_04559870.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
 gi|226909118|gb|EEH95036.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
          Length = 491

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 135/408 (33%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    + D  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQGMADLRVTLNAPGRHNALNAAAAVAVATEEGIEDDAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--ALPRSIHV 424
               V+         ++  + D A VL+  +      V+ +G   +   D  +L R+I  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAAIPGADSRSLCRTIRG 431

Query: 425 H------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                         +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPAQVADMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
 gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
          Length = 498

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 158/478 (33%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +   ++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 4   NLRDLL----APWVPDAPSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ L             ++ +TG+ GK
Sbjct: 60  AAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELG---------- 168
           TTT ++L      + +  A  G+  N +   +            +  EL           
Sbjct: 120 TTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179

Query: 169 ---MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +S  G ++     ++   +V T ++  HL      E   +A   +       G   +
Sbjct: 180 AXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAA-XWLLYSEHHCGQAII 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKS 280
           N DD       AK   L      S     N +      +  +       + +        
Sbjct: 239 NADDEVGRRWLAK---LPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGD 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+  H  G     N+L+ L  +  L   +   +K  +   P  G   R       G  T
Sbjct: 296 GEIESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCG---RXEVFTAPGKPT 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++ A+        H  G+   V G   +  +  +     +AE  +   
Sbjct: 353 VVVD-YAHTPDALEKALQA---ARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVA 408

Query: 401 I--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLVDGDVVVV--KS 451
           +       +      + D L   +   +++  +G    +        + DVV+V  K 
Sbjct: 409 VVTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKG 466


>gi|293610569|ref|ZP_06692869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826913|gb|EFF85278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 482

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 154/416 (37%), Gaps = 49/416 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +       IP+    ++LG L +             IA+ G+
Sbjct: 80  KNANVLVVSTAIDPENPEIKAAIEQRIPIVRRAEMLGELMRYR---------HGIAVAGT 130

Query: 117 VGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + E   S    
Sbjct: 131 HGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P  A++T I   H+  +    +++     +    L   G   +  DD+   
Sbjct: 186 L-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            +  +      + + ++G +++ D +    +Q   QS   V  +G+  + +  +  G H 
Sbjct: 241 EILPRV----GRPVITYGFNEDNDIRAVDIEQDGMQSHFTVLRKGREPLRLTINQPGLHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +G+ +      D   +AL  F     R +             + + Y  +P  
Sbjct: 297 VLNALAAIGVATDEGVSDDAISRALEGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKE 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           ++A I    Q   H + R + +          ++    D  EVLS          Y    
Sbjct: 357 VEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAGE 412

Query: 404 VWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
             + G     L  ++     V     + ++G L   +Q+ L   D+++ + + + G
Sbjct: 413 KPIVGADSRTLARSIRLRGQVEPILVDPVEGNLQNIMQNVLQPNDLLLTQGAGNVG 468


>gi|254475825|ref|ZP_05089211.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
 gi|214030068|gb|EEB70903.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
          Length = 465

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 148/435 (34%), Gaps = 51/435 (11%)

Query: 56  FILHAVQK--GAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+    +    A +VV++         +    +  +PV    ++L  L +L         
Sbjct: 60  FVGQRAENLEDAAVVVISSAIKPGNPELDEARNRGLPVVRRAEMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   +          G ++  I     +     +   G  E 
Sbjct: 114 ---IAIAGTHGKTTTTTMMAELM--------VAGHFDPTIVNGGIIHAYGSNARMGQGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   + + +   E    +   G      
Sbjct: 163 MVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGDFDTLRNGFYEFVSNIPFYGIAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           D    + L  +   +  + + ++G +  AD +       +  +  ++QLQ +        
Sbjct: 223 DHPEVQALVGR---ITDRRVVTYGFNTQADVRAVNLTYKAGVAHFDIQLQAEDRVIEGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L  +      AL+ F       +R+         T+ID+
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMNSSEIRAALAAFGGVN---RRFTKVGEVDGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVL 396
            Y  +P  + A +    Q     +GR IAV         LS  F          D+  + 
Sbjct: 337 -YGHHPVEIAAVLKAARQA---CDGRVIAV-HQPHRYSRLSSLFDDFCGCFNEADVVAIA 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNS 454
            ++      + G     L   L R  H H    +D   L   ++     GD+VV   + +
Sbjct: 392 EVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDEPDLERLVREQARPGDMVVCLGAGT 451

Query: 455 CGFYRLINLLLEEFP 469
              +   N L E   
Sbjct: 452 ISTW--ANALPERLK 464


>gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
 gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
          Length = 458

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 163/432 (37%), Gaps = 49/432 (11%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-----ARLRSKATI--- 110
           H ++KGA + + +         L +    + D    L +          R      +   
Sbjct: 50  HLIEKGAEIYIGHNKDNIKDVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQG 109

Query: 111 ----IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               IAI+G+ GKTTT  ML+   LS+         + +  I V   L  +  +V  G  
Sbjct: 110 HKYNIAISGTHGKTTTTSMLSHITLSA---------NLDPTILVGGNLDVINGNVRVGNS 160

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +  ++   E +       P+I +I  I   HL  +  I +I +   +  + + K G + +
Sbjct: 161 DYFVTEACEYKASFLKFYPYIGIILNIEADHLDFYKDINDIQNTFLKFAKLIPKDGFLIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVV 284
           N DD     +  +        + +FG + N + + +  +  + +   +V     K   + 
Sbjct: 221 NADDERCLAVSKEVDC----NVMTFGIN-NGEVRAKNIEFNNGRPTFDVYRNDTKLFSLT 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H   + L ++     L  D D+ I+ LS F    G  +R+         T++D+
Sbjct: 276 LNVPGNHNILDSLASISASLSLNVDTDSIIEGLSTF---YGAHRRFEIKGELNGITVVDD 332

Query: 345 SYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  +KAA++               PH   R I++  D  +       F+ D   +
Sbjct: 333 -YAHHPTEIKAALNAAKNFPHNRIICIFQPHTYSRTISLFDDFADSF-----FNADTLIL 386

Query: 396 LSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +Y              L + +  + ++     + + +  F++  L +GD+++   +  
Sbjct: 387 ADIYAAREKDTGIVSSDMLGNKIREKGVNCKNLHSFEAITEFLRQELKEGDLLITVGAGD 446

Query: 455 CGFYRLINLLLE 466
              YR+  + LE
Sbjct: 447 V--YRIGEMFLE 456


>gi|188532903|ref|YP_001906700.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia tasmaniensis
           Et1/99]
 gi|188027945|emb|CAO95802.1| UDP-N-acetylmuramate-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 500

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 132/410 (32%), Gaps = 45/410 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  M++   + 
Sbjct: 102 PEVVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAE 152

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +              + I E   S    +      ++P +A++T I
Sbjct: 153 GGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNI 204

Query: 193 APAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+       E +          L   G   L  DD+    L  +      + I ++G
Sbjct: 205 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDTVIRELIPRV----GRQITTYG 260

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q   Q    +  Q K + +V  +  G H A N    + + +    D 
Sbjct: 261 FSEDADVRVENYRQRGAQGHFTLVRQDKPLMQVTLNAPGRHNALNAAAAVAVATEENIDD 320

Query: 311 DTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  + AL  F     R                   ++ + Y  +P  +   I       P
Sbjct: 321 EDILAALESFQGTGRRFDFLGEYPLAQVNGSAGTAMLVDDYGHHPTEVDVTIKAARAGWP 380

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKD 416
                 + +          ++  + D A VLS          Y+     + G    +L  
Sbjct: 381 DKN--LVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIPGADSRSLCR 436

Query: 417 ALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +     V        D +   +   L   D+++V+ + + G  R+   L
Sbjct: 437 TIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGNVG--RIARSL 484


>gi|332160413|ref|YP_004296990.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607126|emb|CBY28624.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664643|gb|ADZ41287.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 460

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 137/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 56  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 106

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 107 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 158

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 159 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 214

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 215 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 274

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + D  ++AL+ F     R              +    ++ + Y  +P  + A I  
Sbjct: 275 EEGIEGDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 334

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 335 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 390

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        D +   +   L   D+++V+ + + G  ++   L E
Sbjct: 391 SRSLCRTIRNRGKLDPILVSDSDTVPEVLAQVLNGDDLILVQGAGNIG--KIARKLAE 446


>gi|310814884|ref|YP_003962848.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
 gi|308753619|gb|ADO41548.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
          Length = 470

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 152/425 (35%), Gaps = 48/425 (11%)

Query: 42  AFFAIKGPHYDGHDF--ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F   +  + DG     I  A++ G          + +  +  IPV    D+L  L +L 
Sbjct: 65  IFTGQRAENIDGAGVLVISSAIKAG-------NPELDAARARGIPVVRRADMLAELMRLK 117

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      +++ G+ GKTTT  M+   L +           N  I            
Sbjct: 118 SN---------VSVAGTHGKTTTTTMVATLLDAGGID---PTVVNGGIIHAYGSNARVGQ 165

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + E   S    IR     +   IA++T I P H+ ++  IE +     +    +  
Sbjct: 166 GEWMVVEADESDGTFIR-----LPTTIAIVTNIDPEHMEHWGTIEALRKGFTDFVTQIPF 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   L  D      L A+   +  + + +FG +++AD +         Q+  ++ L   
Sbjct: 221 YGLAVLCTDHPEVRALAAR---VTDRRVVTFGFNEDADIRAVNLTYEKGQAHFDIALPDG 277

Query: 280 SME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +        G H   N L  + +   L  D D    AL+ F    G G+R+        
Sbjct: 278 VIAGCTLPMPGDHNVSNALAAVAVARHLGMDHDAISAALAGF---AGVGRRFTKVAEVDG 334

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA--EVL 396
            T+ID+ Y  +P  + A +    Q +    G+ +AV         L+  F    A  ++ 
Sbjct: 335 ITIIDD-YGHHPVEIAAVMRAARQATS---GKVVAV-HQPHRYSRLAHLFDEFSACFDLA 389

Query: 397 SLYNISHVWLSGFHVL--ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVV 448
               I+ V+ +G   +  A +D L   I      H     +   L   ++  +  GD++V
Sbjct: 390 DYVGITDVYAAGEDPIPGASRDDLVAGITAHGHPHAFAVTSEADLADVVRKYMAPGDMLV 449

Query: 449 VKSSN 453
              + 
Sbjct: 450 CLGAG 454


>gi|157964317|ref|YP_001499141.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia massiliae MTU5]
 gi|167017283|sp|A8F108|MURC_RICM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157844093|gb|ABV84594.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia massiliae MTU5]
          Length = 485

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 135/397 (34%), Gaps = 42/397 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IP+    D+L  L +L            +A++GS GKTTT  ++     +    
Sbjct: 91  EALERKIPIIRRADMLAELMRL---------KCSVAVSGSHGKTTTTSLVACLFEAAGL- 140

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             C    N  I    +        ++ I E   S    I      +   IA+IT I P H
Sbjct: 141 --CPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPSTIAIITNIDPEH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN 255
           L  +   E +  A       L   G      D      L      +  + I ++G  S++
Sbjct: 194 LDYYKDFETLIGAFRSFITNLPFYGFAVCCTDHKIVRKLVDD---ITERKIVTYGIDSED 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           A             S  +V++      G ++  ++     G H   N L  + +   L  
Sbjct: 251 AHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +       + F   +   +R+         ++ID+ Y  +P  +KA ++    I+    
Sbjct: 311 GIKAIKNGFNNFKGVK---RRFTKVAEYNKASIIDD-YAHHPEEIKATLATAKNIANKQN 366

Query: 369 GRRIAVL--GDMCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           G+ IA+        M  L   F       D+  +  +Y      + G    +L D + + 
Sbjct: 367 GKVIAIFQPHRYSRMQYLFDDFMLCFADADILYITDIYAAGENPIEGITGQSLVDKITKH 426

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            H    ++   +D     I  +   GD++++  + + 
Sbjct: 427 KHHDKANFLAELDDAVGVIIDNAASGDMIIMMGAGNI 463


>gi|256371401|ref|YP_003109225.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007985|gb|ACU53552.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 526

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 129/348 (37%), Gaps = 24/348 (6%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMS 170
            ITGS GKTTTK  +   +    +T A   S+NN  G+   +   +  DV+  + E+GM 
Sbjct: 182 GITGSFGKTTTKGYVAALVEGTYRTLATPASFNNRGGLARAINEHLTSDVEVFVAEMGMF 241

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             GEI  L   VRP I+VIT I P HL        I  AK EI   +E    + LN D  
Sbjct: 242 GPGEIAELVSWVRPEISVITAIGPVHLERLGSEAAIVRAKLEI---VETARVVVLNVDYP 298

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              L        G + +      S  AD      K   E    EV +     ++    + 
Sbjct: 299 RLALAANALEQEGARRVVRVSAISLEADV---AVKPNDEG---EVVVYAHGAKIAKAALA 352

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             +A N+   + +   L    +   + L          +            ++D++YNAN
Sbjct: 353 DVVAGNLACAVAVALELGVAPEDIAERLGRIK--PAPNRLVAGVSPTSGVEVLDDTYNAN 410

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P   + A+  L      G  R +   G M E+G      +   A+  +    SH+ + G 
Sbjct: 411 PMGARRALDALGARRDGGGRRVVVTPG-MIELGRRQYLENFKFAKAAAQV-ASHIIVVGR 468

Query: 410 HVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVV 448
                 +A               + ++   +     ++  L  GDVV+
Sbjct: 469 TNRRALEAGADEGRDEPGSTLQELRWAPDREHAVALVREMLEPGDVVL 516


>gi|126735382|ref|ZP_01751128.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
 gi|126715937|gb|EBA12802.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
          Length = 465

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 147/426 (34%), Gaps = 53/426 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA ++V+++ +      L        PV    ++L  L +L            +A+ G+ 
Sbjct: 70  GAEVIVISSAIKPGNPELDAARAKGMPVVRRAEMLAELMRLKSN---------VAVAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L          G  +  +     +     +   G  E  +    E   
Sbjct: 121 GKTTTTTMVAALLDE--------GGIDPTVINGGIIHAYGSNARMGQGEWMVVEADESDG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++   E +     +    +   G      DD   + L  
Sbjct: 173 TFNRLPATIAIVTNIDPEHMEHWGTEEALHQGFYDFVSNIPFYGLAVCCTDDPDVQSLVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQ 294
           K   +  + + ++G +  AD +       +  +  ++ LQ +            G H   
Sbjct: 233 K---ITDRRVVTYGFNAQADIRAVNLHYKAGVAHFDIALQAEDAVIEGCALPMPGDHNVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    D    AL+ F   +G  +R+          +ID+ Y  +P  + 
Sbjct: 290 NALSAVAVARHLGMKKDEIRAALAGF---KGVNRRFTKVGEIDGVAIIDD-YGHHPVEIA 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHV- 411
           A +    Q     EGR IAV         LS  F    A      +  IS V+ +G    
Sbjct: 346 AVLKAARQ---STEGRVIAV-HQPHRFSRLSHHFDEFCACFNDADVVGISEVFSAGEEPI 401

Query: 412 -----LALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  L   L R  H H    E+ D L   ++     GD+VV   +        I+  
Sbjct: 402 DGASHRDLVAGLIRHGHRHARTVESEDDLERLVREQAKSGDMVVCLGAG------TISAW 455

Query: 465 LEEFPA 470
             E PA
Sbjct: 456 ANELPA 461


>gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
 gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
          Length = 530

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 175/470 (37%), Gaps = 51/470 (10%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +   PQ  + G+S++ + + P + F  I G    G +F+  AV  GA  ++ +T  +
Sbjct: 39  GALLNAAPQ--ILGVSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTAGL 96

Query: 76  ASIGS-LSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +G  LSIPV  V DV    A     V    +    +  +TG+ GKTTT  M+   L +
Sbjct: 97  EFLGDGLSIPVAVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDA 156

Query: 133 IKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGI-FELGMSHLGEIR 176
           + +    IG+        +                LARM       +  E+    L   R
Sbjct: 157 LGEETGLIGTIEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGR 216

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +R  ++  T +   HL     ++E    KA++F   E++    +  DD + + L 
Sbjct: 217 --VDSLRFAVSGYTNLTQDHLDLHGTMDEYFETKAQLFTA-ERSERAVVMVDDQYGQRLA 273

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQN 295
            ++  +  +T+       +A +++ +           ++   G+ +       G     N
Sbjct: 274 ERA-LVPTETLSLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVAN 332

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +   +V     ++DT  +AL+   P           + +    ++D ++N++     A
Sbjct: 333 GALAAVMVLASGVELDTLQRALNAGDPLSVAVPGRMQVVGESPVAVVDFAHNSD-----A 387

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFH 410
               L  I P  +GRRI V G     GE  ++   D+  V +  +   V ++     G  
Sbjct: 388 LAKALDSIRPGEQGRRIVVFGA---TGERDKTKRPDMGAVAA-RHADIVIVTDDDPHGED 443

Query: 411 VLALKDALPR-----------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +++ +              + VH          F  S     D ++V
Sbjct: 444 PAPIREQVASGAQQVLDTERPGVQVHNIAPRAKAVEFAVSLAHANDAILV 493


>gi|238917838|ref|YP_002931355.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
 gi|259509770|sp|C4Z4L9|MURC_EUBE2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238873198|gb|ACR72908.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
          Length = 459

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 143/415 (34%), Gaps = 46/415 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     +     +P+    ++LG +  +   A        I I G+ GKTTT  M
Sbjct: 77  AAIHPDNPEFKAAKEAGLPMLTRAELLGQIMTVYKNA--------INIAGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L           S +  I V   L  +  +   G     ++   E         P 
Sbjct: 129 VSEIL--------LAASMDPTISVGGILNSIGGNTRVGGDNYFVAEACEYTNSFLSFNPT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +I  +   HL  F  I++I  +     E L   GT+ +N D   +E     +      
Sbjct: 181 MNIILNVKEDHLDFFKDIDDIRHSFKLFTEKLPSDGTLIINTDIDNYEYFYQDTDC---- 236

Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGI 302
            + +FG     + +                + + G+  + +  G  G H   N L  +  
Sbjct: 237 EVITFGSDPAKSMYSASDIAYDELGRCTYSLLINGEKADTITLGVPGLHNVYNSLAAIAA 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L+ D++     LS F   +G  +R+         T+ID+ Y  +P  ++A +S  + 
Sbjct: 297 TRKLSVDMEHIKAGLSNF---KGTNRRFEKKGTFNGVTVIDD-YAHHPDEIRATLSSAAH 352

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVL 412
                      PH   R   +        E + +  H D   +  +Y        G    
Sbjct: 353 YPHNRVWVVFQPHTYSRTKLLFN------EFADALSHADKVVLAKIYAARETDTLGISSA 406

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L + +        Y +  + +  ++  + ++GD+++   +     Y++   LL+
Sbjct: 407 DLCEKIKSLGKECVYIDNFEDIEKYLLKNCINGDLLITMGAGDI--YKVGEDLLK 459


>gi|257784291|ref|YP_003179508.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472798|gb|ACV50917.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
          Length = 489

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 160/419 (38%), Gaps = 47/419 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      V     LSIP++    +L  L++             IA+ G+ GKTTT  M+
Sbjct: 98  AIPETNPEVIRARELSIPIWPRAKMLSYLSR---------GRKTIAVAGTHGKTTTSSMI 148

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  +    A        +           +  + + E   S    +      + P +
Sbjct: 149 ATMLDKLG---ADPSFLIGGVVEGYDTNGKNGNGQYFVCEADESDGSFM-----FLNPSV 200

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I   HL ++  +E I +   E    L+K  T+ +N D+  +  L   +     + 
Sbjct: 201 VVITNIEADHLDHYGSLENIENTFCEFMSLLDKEETVVINGDNPHYVELAQST----GRH 256

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQ-GKSMEVVHHG-IGYHMAQNMLMTLGIV 303
           + ++G   + DF  ++ ++ +  ++ + ++   G+++ VV     G H   N    + + 
Sbjct: 257 VVTYGFDPSCDFVCKQEERKAGIENPLTIKTPSGQTISVVLPANPGKHNVANATAAIAVA 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D++ A  ALS F   +G  +R+    +    T++D+ Y  +P  + A    +S  
Sbjct: 317 DTLNFDLEEAAAALSQF---KGARRRFTHVGDINGITVVDD-YGHHPTEIAA---TMSAA 369

Query: 364 SPHGEGRRIAVL--GDMCEMGELSQSF-HI----DLAEVLSLYNISHVWLSGFHVLALK- 415
            P G  R + V          +L+ SF H     D+  V+ +++   + + G     +  
Sbjct: 370 LPLGFKRVVVVFQPHRYSRTQDLADSFTHAFDGIDVLRVMDVFSAGELPIPGVSGKTVSS 429

Query: 416 --DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----GFYRLINLLLEEF 468
              A      V Y  +   L   +  ++  GD+++ + +           LI  L E  
Sbjct: 430 RVQAANSVPDVRYIPSRRDLIADLLETVHPGDLLITQGAGDVTQIGPM--LIRALKERL 486


>gi|68249688|ref|YP_248800.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260581812|ref|ZP_05849608.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|81335883|sp|Q4QLF7|MURC_HAEI8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68057887|gb|AAX88140.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260095005|gb|EEW78897.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|309973394|gb|ADO96595.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2846]
          Length = 475

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 149/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++  L  +       +
Sbjct: 346 YGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSLVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|238761557|ref|ZP_04622532.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
 gi|238700071|gb|EEP92813.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
          Length = 495

 Score =  153 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 136/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 91  AISADNPEIVAAREARIPVIRRAEMLAELMRYR---------HGIAVAGTHGKTTTTAMV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 142 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 193

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 194 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 250 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + D  ++AL  F     R              +    ++ + Y  +P  + A +  
Sbjct: 310 EEGIEDDDILRALIGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATVKA 369

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 370 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGESPIPGAD 425

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        D +   +   L   D+++V+ + + G  ++   L E
Sbjct: 426 SRSLCRTIRNRGKLDPILVSDSDTVPEVLAQVLNGDDLILVQGAGNIG--KIARKLAE 481


>gi|83942742|ref|ZP_00955203.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
 gi|83846835|gb|EAP84711.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
          Length = 471

 Score =  153 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 151/435 (34%), Gaps = 54/435 (12%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
             A  +GA +VV+++ +      L       +P+    ++L  L +L            I
Sbjct: 64  EAANIEGAAVVVISSAIKPGNPELDAARVAGLPIVRRAEMLAELMRLKSN---------I 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKTTT  M+   L          G  +  +     +     +   G  E  +  
Sbjct: 115 AVAGTHGKTTTTTMVAELL--------VNGGIDPTVVNGGIIHAYGSNARMGQGEWMVVE 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E     + +   IA++T I P H+ ++   + +     +    +   G      D   
Sbjct: 167 ADESDGTFNRLPATIAIVTNIDPEHMEHWGDFDTLRKGFLDFVSNIPFYGLAVCCIDHPE 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGI 288
            + L  K   +  + + ++G +  AD +       +  +  ++  Q + +   +      
Sbjct: 227 VQALVGK---ITDRRVMTYGFNTQADVRAVNLHYKAGVAHFDIMFQTEGITIKDCSLPMP 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N +  + +   L    +    AL+ F       +R+         T+ID+ Y  
Sbjct: 284 GDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVN---RRFTKVGEVDGVTIIDD-YGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLY 399
           +P  + A +    Q +   EGR IAV        L    E  E    F+  D+  +  +Y
Sbjct: 340 HPVEITAVLKAARQAT---EGRVIAVHQPHRYSRLHHHFE--EFCACFNDADVVGIAEVY 394

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC-- 455
                 + G     L   L R  H H    ++ D L   ++     GD+VV   + +   
Sbjct: 395 AAGEAPIEGAGRDDLVAGLIRHGHRHARAVQSEDDLARLVREQAGPGDMVVCLGAGTIST 454

Query: 456 ---GFYRLINLLLEE 467
                   +  L +E
Sbjct: 455 WANALPAALEALKKE 469


>gi|242309201|ref|ZP_04808356.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
 gi|239524242|gb|EEQ64108.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
          Length = 489

 Score =  153 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 140/348 (40%), Gaps = 28/348 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
               TIIA+TGS GKT+ K  L   L    K YA   S N   G+   + + +    D  
Sbjct: 159 MPNLTIIAVTGSYGKTSLKNFLIQVLQDDFKVYATPRSINTLTGIIADINQNLSPLTDIY 218

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G   +G+I+ +  L++P IAV+  I PAH+  F  +E I   K EI +        
Sbjct: 219 IVEAGARGVGDIKEIVELIKPQIAVVGKIGPAHIEYFKTMENIYQVKYEILQSDRLERAY 278

Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  + E  K ++  +  +  +  F ++      + +     E +   +   G+ ++
Sbjct: 279 I------YKENTKPEAFNIEFQGKVICFPQN------ISEINADLEGTSFVLTENGEKIQ 326

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+   + +   L    +  IK +        R  +           ++
Sbjct: 327 LETKVLGAFNVINISAAIAVAKDLGVSKNQIIKQVQKLERVNHRLSKIVV----NDKIIL 382

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+SYN N   M  AI    +++    GR++ V   + E    S+  ++DLA  +      
Sbjct: 383 DDSYNGNLEGMLEAI----RLASLHTGRKVIVTPGLVES---SKEANVDLARAIDKV-FD 434

Query: 403 HVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++G  +   LK+ + R   +   +    +   ++S+   GD+++ 
Sbjct: 435 IAIITGELNSKILKEFIYRPQKII-LKDKANMESVLKSATQAGDLILF 481


>gi|325123865|gb|ADY83388.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 482

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 154/416 (37%), Gaps = 49/416 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +       +P+    ++LG L +             IA+ G+
Sbjct: 80  KNANVLVVSTAIDPENPEIKAAIEQRVPIVRRAEMLGELMRYR---------HGIAVAGT 130

Query: 117 VGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + E   S    
Sbjct: 131 HGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P  A++T I   H+  +    +++     +    L   G   +  DD+   
Sbjct: 186 L-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            +  +      + + ++G +++ D +    +Q   QS   V  +G+  + +  +  G H 
Sbjct: 241 EILPRV----GRPVITYGFNEDNDIRAVDIEQDGMQSHFTVLRKGREPLRLTINQPGLHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +G+ +      D   +AL  F     R +             + + Y  +P  
Sbjct: 297 VLNALAAIGVATDEGVSDDAISRALEGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKE 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           ++A I    Q   H + R + +          ++    D  EVLS          Y    
Sbjct: 357 VEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAGE 412

Query: 404 VWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
             + G     L  ++     V     + ++G L   +Q+ L   D+++ + + + G
Sbjct: 413 KPIVGADSRTLARSIRLRGQVEPILVDPVEGNLQNIMQNVLQPNDLLLTQGAGNVG 468


>gi|170748773|ref|YP_001755033.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
 gi|229620046|sp|B1LXZ3|MURC_METRJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170655295|gb|ACB24350.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 468

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 145/434 (33%), Gaps = 55/434 (12%)

Query: 44  FAIKGPH-YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNK 97
            A KG   + GHD     V++ A +VV          + +     +PV    ++L  L +
Sbjct: 48  LAEKGMRTFVGHD--AKNVEEAALVVVSTAIRRDNPELQAARERRLPVVRRAEMLAELMR 105

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                        +AI G+ GKTTT  ++   L +        G+ +  +     +    
Sbjct: 106 FKSC---------VAIAGTHGKTTTTSLVATLLDA--------GNLDPTVINGGIINAYG 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +   G  E  +    E       +   +A++T I P HL +F   + I  A     + +
Sbjct: 149 TNARMGAGEWMVVEADESDGTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDAFRRFIDNI 208

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  D    + L         + I ++G++  AD +L        QS   V ++
Sbjct: 209 PFYGFAVMCIDHPVVQDLVGHIE---DRRIITYGENPQADVRLIDVDLRGGQSRFRVMIR 265

Query: 278 GKS-------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +         ++V    G H A N    L +   L    D   +AL+ F   + R  R 
Sbjct: 266 DRRPGYRMEMEDLVLPMPGKHNALNATAALAVAHELGVKPDAIRQALAGFGGVKRRFTR- 324

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEM 381
                +     I + Y  +P  +KA +              + PH   R  ++  D C  
Sbjct: 325 ---TGEWNGATIFDDYGHHPVEIKAVLKAARASTEHGVIAVVQPHRYTRLQSLFDDFCTC 381

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQS 439
              + +       V  +Y      + GF   +L   L    H      E  + L   I  
Sbjct: 382 FNDADT-----VIVAPVYAAGEQPIEGFDRDSLVAGLRSRGHRDARALERPEELAGIIAD 436

Query: 440 SLVDGDVVVVKSSN 453
               GD VV   + 
Sbjct: 437 LAKPGDYVVCLGAG 450


>gi|225378135|ref|ZP_03755356.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
 gi|225210016|gb|EEG92370.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
          Length = 459

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 152/402 (37%), Gaps = 41/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+     IP+    ++LG +        + +    IA++G+ GKTTT  M
Sbjct: 77  AAIREDNPEFAAAKEKGIPMLSRAELLGQI--------MDNYQNSIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L + KK        +  I V   L  +  ++  G  ++ +S   E        RP 
Sbjct: 129 ISQILLAAKK--------DPTITVGGILKAIDGNLRVGKSDVFISEACEYTNSFLNFRPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++I  I   HL  F  I +I ++     +  ++ G I +N +   ++ +          
Sbjct: 181 YSIILNIEAEHLDFFKDIHDIRNSFHLFAKNTKENGAIIINGEIENYQEIVEGLA----P 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G S   DF         +  +       G+  M+V  +  G H   N L  + + 
Sbjct: 237 QVITYGMSDACDFYPADITFNEKACANFTAMYHGEKVMDVALNVPGLHNVSNALAAIALA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L    +  +  LS F    G  +R++        T+ID+ Y  +P  ++A ++   + 
Sbjct: 297 LDLKISKEDILAGLSAFG---GADRRFQYKGCVDGVTVIDD-YAHHPTEIRATLTAAKKY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L D  E+  ++     D+  +  +Y        G     +
Sbjct: 353 PHKRLVLVFQPHTYSRTKAFLNDFAEVLSMA-----DVVVLADIYAAREKNTFGISSRDI 407

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  L  +   VHY  +   +  F+  + ++GD+++   +   
Sbjct: 408 EAKLKEKGTDVHYFPSFTEIENFLLKNCINGDLLITMGAGDI 449


>gi|254282152|ref|ZP_04957120.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           NOR51-B]
 gi|219678355|gb|EED34704.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           NOR51-B]
          Length = 466

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 144/406 (35%), Gaps = 41/406 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +  +  IP+    ++L  L +             IA+ G+ GKTTT  +
Sbjct: 71  SAIADTNPELQAAKASRIPIVPRAEMLAELMRYRYG---------IAVAGTHGKTTTTSL 121

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L    +     IG   N  G    L     D  F + E   S    +  L     P
Sbjct: 122 IASILGEAGEDPTFVIGGVLNQGGSNARLG----DGRFLVVEADESDASFLHLL-----P 172

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T +   H+ ++         A  E    L   G   +  DD     +        
Sbjct: 173 MMSVVTNVEADHMDHYGGDYANYERAFVEFLHNLPFYGLAVMCIDDPGVRAVLPTV---- 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLG 301
            + + S+G+   ADFQL   +     + + V+     K++E+  +  G H A N    + 
Sbjct: 229 TRQVLSYGRDDTADFQLTALEGDGMVTLLTVRRPEPCKTLELTLNMPGVHNALNATAAVA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + + L    D     L+ F     R  R      +    L+ + Y  +P  + A +   +
Sbjct: 289 VATELGIADDAIAAGLARFGGVGRRFSRLGTVRWEHGEALLIDDYGHHPTEVAATL---A 345

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVL 412
                   RR+ +L         ++  + D   VLS         +Y+     ++G    
Sbjct: 346 AARSACPDRRLVMLYQ-PHRYSRTRDLYEDFVAVLSDCEVLLLLDVYSAGEEPIAGADSR 404

Query: 413 ALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           AL  ++ +   V   +    + L   + + L DGD+++ + + + G
Sbjct: 405 ALTRSIRQRGAVEPIFVADAEALAPVLINILRDGDLLLTQGAGNIG 450


>gi|21672874|ref|NP_660939.1| UDP-N-acetylmuramate-alanine ligase [Chlorobium tepidum TLS]
 gi|25453121|sp|Q8KGD5|MURC_CHLTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21645925|gb|AAM71281.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium tepidum TLS]
          Length = 475

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 141/428 (32%), Gaps = 60/428 (14%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSI--------PVFGVDDVLGALNKLAVAARL 104
           GH     A   GA  VVV +  V    ++ I        PV   D++LG L +       
Sbjct: 60  GH----QAENVGASDVVVYSSAVRPESNVEILAAQKLGIPVIKRDEMLGELMRHKSG--- 112

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFG 163
                 I ++G+ GKTTT  M+   L    ++    IG  ++++     +      V   
Sbjct: 113 ------ICVSGTHGKTTTTAMVATMLLEAGQSPTVMIGGVSDYLKGSTVVGEGKSMVIEA 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                     E       + P IAV+ ++   H+  +  ++ +    AE    +   G +
Sbjct: 167 ---------DEYDRAFLKLTPTIAVLNSLESEHMDTYGTMDNLRDCFAEFANKVPFYGRV 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D      +  + +    +   +FG  ++AD    + +     S   V+  G+    
Sbjct: 218 ICCVDWPEIRRIIPRLN----RRYTTFGIEEHADVMASEIEPGDGGSTFTVEAFGERYPG 273

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N L    +   +    +  I   +      G  +R++         L+
Sbjct: 274 VRLNVPGRHNVLNALAAFSVGLEIGLPPERII---AGLARYSGMRRRFQVKYRGADGVLV 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  +P  +KA +            R +AV      +   +  F  +    LS     
Sbjct: 331 IDDYAHHPTEVKATVRAARDGWKEH--RIVAVF--QPHLYSRTAEFAGEFGWALSR--AD 384

Query: 403 HVWLSGF---------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            V+++G                 ++A       + +V ++E  + L   +Q       + 
Sbjct: 385 TVYVAGIYPSREKAEDYPGITGELVAEASRTAGAKNVWFTEEHEALLAALQEEAAPETLF 444

Query: 448 VVKSSNSC 455
           +   +   
Sbjct: 445 LFMGAGDI 452


>gi|149202203|ref|ZP_01879176.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
 gi|149144301|gb|EDM32332.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
          Length = 467

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 141/409 (34%), Gaps = 47/409 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV    ++L  L +L            IA+ G+ 
Sbjct: 70  GAAVVVISSAIKPGNPELDEARKRGLPVVRRAEMLAELMRLKSN---------IAVAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L          G  +  +     +     +   G  E  +    E   
Sbjct: 121 GKTTTTTLVAELL--------VKGGIDPTVVNGGIIHAYGSNARMGQGEWMVVEADESDG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++  IE +     +    +   G      D    + L  
Sbjct: 173 TFNRLPATIAIVTNIDPEHMEHWGNIERLRQGFYDFVSNIPFYGLAVCCTDHPEVQALVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQ 294
           +   +  + + ++G +  AD +          +  +V LQ  G+ +E       G H   
Sbjct: 233 R---ITDRRVMTYGFNAQADVRAVNLHYEKGVAHFDVALQAEGRMIEGCTLPMPGDHNVS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    D    AL+ F       +R+         T+ID+ Y  +P  + 
Sbjct: 290 NALSAVAVARHLGMKGDEIRTALASFGGVN---RRFTRVGEVNGVTIIDD-YGHHPVEIA 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWL 406
           A +    Q +    GR IAV         LS  F          D+  +  +Y      +
Sbjct: 346 AVLRAARQATT---GRVIAV-HQPHRYTRLSSLFDDFCGCFNEADVVAIAEVYAAGEDPI 401

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            G     L   L R  H H       D L   ++     GD+VV   + 
Sbjct: 402 PGASRDDLVAGLIRHGHRHARAIRDEDDLERLVREQAGPGDMVVCLGAG 450


>gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
 gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
          Length = 477

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 155/484 (32%), Gaps = 71/484 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L            P   V G++ DSR + P   + A+ G  +DGH F+  A    
Sbjct: 1   MTLRELFAPFG----LAAPDVEVRGVTHDSRRVEPGFVYVALPGRRFDGHAFVADA---- 52

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAV--AARLRSKATIIAITGSVGKT 120
                      A   S  +P   + +     AL +LA     R   K  +  +TG+ GKT
Sbjct: 53  -VARGAVAVAGARALSPGVPYLRLPETELRPALARLAAEFHGRPSEKLWVAGVTGTDGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-----------------IGVPLTLARM-PVDVDF 162
           TT  +L   L+S  +    IG+                       V   LARM    +  
Sbjct: 112 TTTFLLHHLLASSGRRTGMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGLLARMVEGGLTH 171

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E     L + R     V   +AV T ++P HL     +E    AKA + E       
Sbjct: 172 AVLEASSHALAQHRL--DAVDFDLAVWTHLSPEHLDFHGDMEGYFRAKALLVERAR---L 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN    +   L  + H        S+G     +F+L +  + +              E
Sbjct: 227 AVLNTACPYAMRLVHRPH-------LSYG--PGGEFELLEVHEEAAGLAFAFASPEGRFE 277

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G + A+N L  L          + A   L  F    GR +  R    +     +
Sbjct: 278 TRLPMLGRYNAENALAALAAAYTAGVSPERAAAELPRFAGVPGRMQIVRTEPFR-----V 332

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLA- 393
              +   P  + A +S L    P  EGR + V+G   E        +G  +     DLA 
Sbjct: 333 VVDFAHTPKGLAATLSALR---PTTEGRLVVVVGSAGERDPGKRAPLGRTAVEL-ADLAV 388

Query: 394 ---EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
              E      +  +          ++A  R    +  E                 D VV+
Sbjct: 389 FTEEDSRSEPVEEILA--ELARGAEEASGREGKDYLLEPDRGRAIALAFELARPDDTVVL 446

Query: 450 --KS 451
             K 
Sbjct: 447 AGKG 450


>gi|296448262|ref|ZP_06890156.1| UDP-N-acetylmuramate/alanine ligase [Methylosinus trichosporium
           OB3b]
 gi|296254214|gb|EFH01347.1| UDP-N-acetylmuramate/alanine ligase [Methylosinus trichosporium
           OB3b]
          Length = 468

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 137/429 (31%), Gaps = 47/429 (10%)

Query: 47  KGPHYD-GHD---FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           KG     GHD       AV   +  +  +   +A      +PV    ++L  L +     
Sbjct: 51  KGARVHVGHDAQWLGDAAVVVASSAIKRDNPEIAEARRRRLPVVKRAEMLAELMR----- 105

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                   +A+ G+ GKTTT  ++   L +           N  I         P   ++
Sbjct: 106 ----DKRCVAVAGTHGKTTTTSLVATLLDAGGLD---PTVVNGGIINAYGTNARPGAGEW 158

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S    ++     +   IA++T + P HL +F   + +        + L   G 
Sbjct: 159 MVVEADESDGTFLK-----LPAEIAIVTNVDPEHLDHFGDFDAVKRGFRSFIDNLPFYGF 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +  D      +  +      + + S+G+ + A+ +L             V ++ +   
Sbjct: 214 AAVCIDHPTAREIIGEIE---DRRVISYGEDERAEARLVDLDLEGGVGRFAVLIRDRDTG 270

Query: 282 ------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  +V    G H A N    + +   L   ++     L+ F   +    R      
Sbjct: 271 VETRIDRLVLPAAGRHNALNATAAIAVAHRLGVSLNDIRSGLAGFAGVK----RRFTKTG 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF----- 388
           +     I + Y  +P  + A   VL       +GR IA++       +  L   F     
Sbjct: 327 EWNGVSIFDDYGHHPVEIAA---VLRAARASTKGRVIAIMQPHRYTRLQSLFSEFAGCFA 383

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDV 446
             D+  +  +Y      ++G    AL  A     H       + + L   I      GD 
Sbjct: 384 DADVTLIADVYPAGEAKIAGVDGAALARAAQEQGHADARALGSSNELPQLIAKIAAPGDY 443

Query: 447 VVVKSSNSC 455
           VV   +   
Sbjct: 444 VVFLGAGDI 452


>gi|167043602|gb|ABZ08296.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 144/411 (35%), Gaps = 48/411 (11%)

Query: 64  GAGLVVVNTDMVAS-------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA +VV ++ +  S            +PV    ++LG L ++            I I G+
Sbjct: 91  GACVVVHSSAVDPSQNPETLYAEEKHVPVIRRSEMLGELMRMKFG---------IGIAGT 141

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    + +        G+++  I V   +A    +   G  ++ +    E  
Sbjct: 142 HGKTTTTTMAGHVVGA--------GAFDPTIIVGGKVAAFGSNAVSGEGDIILIEADEYD 193

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P +AVIT I   HL  +  +E+I +A  +    +   G   +  DD     + 
Sbjct: 194 RTFLRLTPSLAVITNIDADHLDCYEDLEDIRAAFIQYASSVPFFGAAIVCLDDENVRGII 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQN 295
           +K      + + ++G  + A  +    +Q       +V    + +  V     G H   N
Sbjct: 254 SKI----DRRVVTYGTLRQAQIRAESIQQEGRVMHFDVISSEERLGRVSLDAPGRHNVLN 309

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + I   L    +     +S F   + R       + +    L+ + Y  +P  +KA
Sbjct: 310 ALAAIAIGIELDMKFEDISAGISAFQGVDRRMH----EIGEARGVLVVDDYAHHPTEIKA 365

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQ---------SFHIDLAEVLSLYNISHVWL 406
            +   S   P    R +AV      +   ++          F  D+  ++ ++      +
Sbjct: 366 TLEAASGCWPE--RRIVAVF--QPHLYSRTRDFEDDFAAAFFDADVVVIMDVFGAREEPI 421

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            G     +     +S H H  Y    + L   +      GDV++   +   
Sbjct: 422 EGITGEVIATGAKKSGHPHVIYVPQKEDLVGRMLELSKPGDVIITMGAGDI 472


>gi|237749168|ref|ZP_04579648.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes OXCC13]
 gi|229380530|gb|EEO30621.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 149/432 (34%), Gaps = 61/432 (14%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++  A  VVV+T +      +      +IP+     +L  L +L        
Sbjct: 56  GH--APENIEN-ADAVVVSTAIRDDNPEVLAARKKNIPLVPRAVMLAELMRLKRG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               IAI G+ GKTTT  ++   L+      T+   G  N+               DF +
Sbjct: 108 ----IAIAGTHGKTTTTSLVASVLAEGGFDPTFVIGGRLNSAGANAG-----LGAGDFIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      + P I VIT I   H+  +      +  A  E  + L   G +
Sbjct: 159 AEADESDASFL-----NLYPVIEVITNIDADHMDTYGHDFARLKQAFVEFTQRLPFYGRV 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  DD     +K        K + ++G  ++AD +       +E + M      K    
Sbjct: 214 MLCIDDKNVCEIK----PFISKPVTTYGFHEDADVRA--IDPKAEGTMMTFTALQKDHPP 267

Query: 284 V---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR---YRCALNQG 337
           +    +  G H  QN    + I   L  +     +A+  F     R  R    R     G
Sbjct: 268 ISIRLNQPGMHNVQNACAVIAIARELGIEDSAIQRAMEQFTGVNRRFTRLGTVRLPQKTG 327

Query: 338 FF---TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P+ M A I+      P     R  V+         ++    D  +
Sbjct: 328 TSIAEVELVDDYGHHPSEMAATIAAARGAYPD----RRLVIAFQPHRYTRTRDLFEDFVK 383

Query: 395 VLSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVD 443
           VLS  ++     V+ +G   +   D   L R+I V       + E +  +   I + + D
Sbjct: 384 VLSGADVLLLGEVYPAGEQPIVAADGRTLARTIRVAGKVDPVFVENIAEMPDAILNVIED 443

Query: 444 GDVVVVKSSNSC 455
            DVV+   + S 
Sbjct: 444 DDVVITMGAGSI 455


>gi|291533200|emb|CBL06313.1| UDP-N-acetylmuramyl-tripeptide synthetases [Megamonas hypermegale
           ART12/1]
          Length = 340

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 110/327 (33%), Gaps = 38/327 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV------ 160
             +I +TG+ GKT++  ML   L         IG+    I      +     DV      
Sbjct: 1   MRMIGVTGTNGKTSSTYMLRDILRKAGYKVGVIGTIKIMIEDEEMPIHNTTPDVIDLQEI 60

Query: 161 ---------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D+ + E+    L   R          A+ T +   HL     +E  A AKA
Sbjct: 61  LDKMYKQNIDYVVMEVSSHALDMNRI--AGCEYDTAMFTNLTQDHLDYHKTMENYALAKA 118

Query: 212 EIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           ++F+ L      +      +N DD F      +     +    ++G   +A  +    + 
Sbjct: 119 KLFDSLSAPNLVKSNKNAVINLDDEFGSKTMIEHTKCNL---ITYGIKNDAVLKAENVEI 175

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +  +  +V+ +   +       G     N+L  +G+        D   + L  F    G
Sbjct: 176 KASGASFDVKYKDDCVHFDLKVTGMFNVYNILGVIGVALAEKISFDIIKETLEAFEAVAG 235

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R    Q F  ++D  Y   P  ++  +    +I+   + R I V G     G+  
Sbjct: 236 RFELVR--QGQDFSVIVD--YAHTPDGLENVLKTAREIA---KKRLIVVFGC---GGDRD 285

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++    +  + +      V  +  +  
Sbjct: 286 RTKRPIMGRIAAQL-ADVVIATSDNPR 311


>gi|260426600|ref|ZP_05780579.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
 gi|260421092|gb|EEX14343.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
          Length = 475

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 137/400 (34%), Gaps = 39/400 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       +PV    ++L  L +L            +A+ G+ GKTTT  M
Sbjct: 88  SAIKPGNPELDEARRRGLPVVRRAEMLAELMRLKSN---------VAVAGTHGKTTTTTM 138

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +        G  +  +     +     +   G+ E  +    E     + +   
Sbjct: 139 VATLLDA--------GQLDPTVINGGIIHAYGSNARVGLGEWMVVEADESDGTFNRLPAT 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++  IE +     +    +   G      D +  + L  +   +  +
Sbjct: 191 IAIVTNIDPEHMEHWGSIENLRDGFYQFVSNIPFYGLAVCCTDHAEVQALVGR---VTDR 247

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +    +     +  ++ LQ + M+         G H   N L  + +
Sbjct: 248 RVTTYGFNAQADVRAVNLRYEKGIAHFDILLQAEDMKIEGCTLPMPGDHNVSNALAAVAV 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F       +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 308 ARHLGMKREEIRLALAAFGGVN---RRFTRVGEVNGVTIIDD-YGHHPVEIAAVLKAARQ 363

Query: 363 ISPHGEGRRIAV--LGDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALK 415
            +   EGR IAV        +  L   F       D+  +  +Y      + G     L 
Sbjct: 364 AT---EGRVIAVHQPHRYSRLHSLFDDFCACFNEADVVAIAEVYAAGEAPIEGATRDDLV 420

Query: 416 DALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
             L R  H H       D L   ++     GD+VV   + 
Sbjct: 421 AGLIRHGHRHARAILNEDDLERLVREQARPGDMVVCLGAG 460


>gi|109947254|ref|YP_664482.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
 gi|109714475|emb|CAJ99483.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
          Length = 493

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 36/348 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
             +IAITGS GKT+TK  L   L +    +A   S N  +G+   + +   D  +  I E
Sbjct: 168 LKVIAITGSFGKTSTKNFLHQILQTKFNVHASPKSVNTLLGIANDINQNLEDSSEIYIAE 227

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            G  + G+I+ +THL+ PH+AVIT +   HL  F  +E I   KAE+ +           
Sbjct: 228 AGARNKGDIKEITHLIEPHLAVITEVGEQHLEYFKTLENICETKAELLDSKR-------- 279

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSME 282
                       +    I+TI  +  +     D+   ++  +   + ++ E+ L G    
Sbjct: 280 ---------LENAFCYSIETIKPYAPNNAPLIDYSSLVKNIQSTLKGTFFEMLLDGVWES 330

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+ + + I   L  + +   + +   +P   R +            +I
Sbjct: 331 FGTKVLGKFNAYNIALAILIAKHLGLETERIKQLVLNLNPIAHRLQLLEV----NQKVII 386

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ ++     
Sbjct: 387 DDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAKKINEV-FD 438

Query: 403 HVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++G  +   +   L +   +   +    L   +Q++ + GD+++ 
Sbjct: 439 VAIITGELNSKVIASHLKKPQKIL-LKDKGQLENILQATTIQGDLILF 485


>gi|123441033|ref|YP_001005022.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166224749|sp|A1JJJ4|MURC_YERE8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122087994|emb|CAL10782.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 491

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 137/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +  ++AL+ F     R              +    ++ + Y  +P  + A I  
Sbjct: 306 EEGIEDNDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + V          ++  + D A VLS          Y      + G  
Sbjct: 366 ARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 421

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     +        + +   +   L   D+++V+ + + G  ++   L E
Sbjct: 422 SRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQGAGNIG--KIARKLAE 477


>gi|292489356|ref|YP_003532243.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|292898420|ref|YP_003537789.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291198268|emb|CBJ45374.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291554790|emb|CBA22612.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|312173521|emb|CBX81775.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 491

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 137/412 (33%), Gaps = 45/412 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV    ++L  L +             IA+ G+ GKTTT  M++   + 
Sbjct: 93  PEVVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                      N  +              + I E   S    +      ++P +A++T I
Sbjct: 144 GGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+       E +          L   G   L  DD+    L  +      + I ++G
Sbjct: 196 EADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPRV----GRQITTYG 251

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S +AD ++  ++Q   Q    +    K + +V  +  G H A N    + + +    + 
Sbjct: 252 FSDDADVRVENYQQLGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAVAVATEENIED 311

Query: 311 DTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  + AL  F     R                   ++ + Y  +P  +   I       P
Sbjct: 312 EDILNALESFQGTGRRFDFLGEYPLAPVNGSAGTAMLVDDYGHHPTEVDVTIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--ALPR 420
                 + +          ++  + D A VLS  ++     V+ +G   +A  D  AL R
Sbjct: 372 DKN--LVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGESPIAGADSRALCR 427

Query: 421 SIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +I              D +   +   L   D+++V+ + + G  R+   L E
Sbjct: 428 TIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGNVG--RIARTLAE 477


>gi|258645243|ref|ZP_05732712.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
 gi|260402593|gb|EEW96140.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
          Length = 469

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 155/407 (38%), Gaps = 46/407 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + ++   +    S  +P+F   DVL A+ K             IA+ G+ GK+TT  M
Sbjct: 74  SAIGMDNPELQEAKSRDLPIFHRSDVLAAIFK---------WGKGIAVAGAHGKSTTSAM 124

Query: 126 LTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +      +       +G + +++     L       +  I E   S    ++F T L   
Sbjct: 125 IGQIFHVAKMDPTIVLGGFTDYLKGNSCLG----HGEHIIAEADESDGSFLKFATFL--- 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALG 243
             +V+T I   HL ++  +E I  A  E    +  K G   +  D    + +  +     
Sbjct: 178 --SVVTNIEDDHLDHYGTVENIRKAFVEFLNHVTYKDGGAIVCIDSEGVQAILPQIK--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            K + SFG + +A+++    +   +    +V   + K   V     G H  ++ L  + +
Sbjct: 233 -KKVISFGINDSAEYRAVNKRYKKQNMLFDVYHYKEKLGTVSLQIPGIHNVRDALGAIVV 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +T++KALSVF   +   +R++  + +    ++D+ Y  +P  + A +    +
Sbjct: 292 ALYCGISFETSVKALSVFSGVK---RRFQTKMKEHGVWIVDD-YAHHPTEIAATLKAAKE 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDA-- 417
           +     GR   +          ++    + +E     ++   + ++ +G   +   D   
Sbjct: 348 M-----GRHRVICAFQPHRYSRTKLLQEEFSEAFIDADVLFFTDIYAAGESPIQGIDGTL 402

Query: 418 LPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +P  +        ++Y + ++ L   +   +   D+++   + +   
Sbjct: 403 IPNLVKRRFPDKPINYVKNVEDLPKELYKVIKPDDMLITMGAGNIYM 449


>gi|257865983|ref|ZP_05645636.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257872316|ref|ZP_05651969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257875610|ref|ZP_05655263.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
 gi|257799917|gb|EEV28969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257806480|gb|EEV35302.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257809776|gb|EEV38596.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
          Length = 444

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 134/372 (36%), Gaps = 50/372 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              T IA+TGS GKT+T  +L+  LS I+ T   IG    H            D +F  F
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIGDGTGHG---------EPDAEFFSF 153

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   F  IE++ SA   +   ++K    F 
Sbjct: 154 EA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYFHSIEDVFSAFQSMASQVKKGIFAF- 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD +   L+A         IY +G + N D Q +  ++ ++ S  +V + G+++   V
Sbjct: 208 -GDDEYLRKLEADV------PIYYYGVNDNDDVQAKNIERTTQGSEFDVFIHGENIGHFV 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +      D+      +  F   + R      A        I +
Sbjct: 261 LPAFGQHNINNALSVIAVAYKEGLDMKEVAAEMISFPGVKRRFSEKIVADMT-----IVD 315

Query: 345 SYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Y  +PA +KA I    Q            PH   R IA++ +  E  +L+   H+ L +
Sbjct: 316 DYAHHPAEIKATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDLAD--HVYLCD 373

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +      S        +  L   + +   V   E +  L            VV+   +  
Sbjct: 374 IFGSARESR---GDVKIEDLGKKIQKGGTVIKEENVSPLLDH------QNAVVIFMGAGD 424

Query: 455 C-GFYRLINLLL 465
              F      LL
Sbjct: 425 VQKFETAYEKLL 436


>gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda FL6-60]
          Length = 469

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 150/458 (32%), Gaps = 55/458 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR  A  + F A+ G   DG  FI  A+ +G   V+   +  A  GS+     +PV  
Sbjct: 1   MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEM---LTIALSSIKKTYACIGS 142
           +  +   L+ L      +  +   ++ +TG+ GKTTT ++       L         +G+
Sbjct: 61  LSHLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120

Query: 143 YNNHIGVP-----------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                  P             + R   D    +  + +S  G ++     +    +  T 
Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E  A AK  +F     +G   +N DD        K       T+    
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFS-THHSGEKIINADDETGRRWLDKLPDAVAVTVSGAL 239

Query: 252 KSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +  A      R        + +       +  +    +G     N+L+ L  +  L   
Sbjct: 240 PAGWAGRWLAARSVAYHDGGATIAFDSCWGAGTLNSRLMGEFNVSNLLVALATLLALGYP 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +     A     P  GR + ++     G  T++ + Y   P +++ A   L     H +G
Sbjct: 300 LAALCAASGQLQPVCGRMEVFQAP---GKPTVVVD-YAHTPDALEKA---LLAARLHCQG 352

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS--------------LYNISHVWLSGFHVLALK 415
               + G   +     +     +AE  +                 I +  LSG     L 
Sbjct: 353 LLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLA 412

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A+P       +  M              DV++V  K 
Sbjct: 413 MAIPGRAEAVTAAVMQAA---------PQDVILVAGKG 441


>gi|238791173|ref|ZP_04634812.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
 gi|238729306|gb|EEQ20821.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
          Length = 491

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 137/417 (32%), Gaps = 47/417 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 246 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 305

Query: 305 ILTADVDTAIKALSVFHPKE------GRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               + +  ++AL  F          G          +G   L+D+ Y  +P  + A I 
Sbjct: 306 EEGIEDEDILRALVGFQGTGRRFDFLGNFPLMPVNGKEGSAMLVDD-YGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGF 409
                 P  + R + V          ++  + D A VLS          Y      + G 
Sbjct: 365 AARAGWP--DKRIVMVF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGA 420

Query: 410 HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +L   +     +        + +   +   L   D+++V+ + + G  ++   L
Sbjct: 421 DSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQGAGNIG--KIARKL 475


>gi|166710653|ref|ZP_02241860.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 477

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 139/403 (34%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLAAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      I +A AE  + L   G   L  DD     L  ++     + + S
Sbjct: 190 NIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLLCIDDPEVAALAGRTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    ++L  G +  V     G H   N L    I   L  
Sbjct: 246 YGMSENADVRAEDVVQDGPRMRFTLRLPEGTATPVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              T  +AL  F    G G+R+        + G    + + Y  +P  ++A   V +   
Sbjct: 306 APGTIARALENF---AGIGRRFNDLGEVTTSTGARVRVVDDYGHHPRELEA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSTVDALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             + GL   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQIAGLAQVLPDVLQDGDLLLMMGAGDIG 461


>gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
 gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
          Length = 481

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 169/496 (34%), Gaps = 72/496 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++LQ   G           N IS DSR +  +  FF +KG ++   +F+  A+++G 
Sbjct: 16  NFREILQ--DGEYHYSASGVSFNQISYDSRKVNAETLFF-VKGANFKK-EFLEQAIEQGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              V   D       +SIP   V D+  A++   +        +  ++A TG+ GKTT+ 
Sbjct: 72  QWYVAEQDF-----EVSIPAIIVTDIKQAMSLIAMEFYGHPERQLKLLAFTGTKGKTTSA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPV-----DVDFGIFE 166
                 L       A + + N  +               + L  M       D    I E
Sbjct: 127 YYAYKILEQ-GHRPAMLSTMNTTLDGKTFFKSTLTTPESIDLFEMMAQAVANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +        R   + +   + V   I+P H+        E+    K  + E    +  + 
Sbjct: 186 VSSQAYLVKR--VYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N D   F++L  +           +G       Q                + GK + + 
Sbjct: 241 VNSDMDHFDILAEEVAEQDHD---FYGSQSGNQVQ--------NSKAFSFSVTGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 QTQLIGRFNQENAVAAGLACLRLGASLEDIQKGIAK---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  +SV   +  H  G    VLG     G   +S   D   +L  +    
Sbjct: 347 --YAHNGDSLKKLLSV---VETHQTGTISLVLGS---TGNKGESRRKDFGLLLEDHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KSSN 453
           V+L+         LA+ + +    +  V      +       ++     D V++  K ++
Sbjct: 399 VFLTADDPNYEDPLAIAEEISSFITRPVEKIADREQAIQQAMATTSKPEDTVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++N + EE+P
Sbjct: 459 C---YQIVNGVKEEYP 471


>gi|145633131|ref|ZP_01788863.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145635590|ref|ZP_01791288.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148826248|ref|YP_001291001.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229844906|ref|ZP_04465044.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
 gi|166224693|sp|A5UCW7|MURC_HAEIE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|144986357|gb|EDJ92936.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145267152|gb|EDK07158.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148716408|gb|ABQ98618.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229812287|gb|EEP47978.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
          Length = 475

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 148/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I      D +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIDNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|291288102|ref|YP_003504918.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885262|gb|ADD68962.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 465

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 153/422 (36%), Gaps = 52/422 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH +  +A  +GA +VV ++ +  +   L       IPV    ++L  L +L        
Sbjct: 59  GHRY-ENA--EGADVVVYSSAVRETNPELVCAKDNFIPVIKRGEMLAELMRLKY------ 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI+GS GKTTT  M+   L++ K         +  + V   L     +   G   
Sbjct: 110 ---SIAISGSHGKTTTTSMVAEILNAAK--------LDPTVVVGGILNTKDTNATLGSGN 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E      L+ P +A++T I   H   +  +E++    A+    +   G+  L 
Sbjct: 159 VIVAEADESDRSFLLMSPSVALVTNIDFEHPDTYRDLEDVKRTFADFISRVPFYGSAVLC 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D     L      L  +   ++G    AD      +Q       +V + G+    +  
Sbjct: 219 LEDDNTADLI----PLIDRRFVTYGFRAQADVHGVNVEQKGFSMQFDVIISGEKAGRIKL 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + + +       T  +AL  F       +R   +       ++ + 
Sbjct: 275 GFPGEHNVLNALGAIAVATQFDIPFRTIKRALEGFKGV----QRRLTSRYDDGECIVMDD 330

Query: 346 YNANPASMKAAISV----------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +K  +            L+   PH   R  A++ +       +  F  D+  +
Sbjct: 331 YGHHPTEIKTTLKAVRGAYPDKKILAIFQPHRYSRTAALMKEFA-----TAFFDADMLFI 385

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             +Y  S   + G    A+   +      +V Y    DG+F ++     DG V++   + 
Sbjct: 386 TDIYAASEEKIDGVDSEAMVKEIKTRGFKNVKYIPGFDGIFEYLHEYGCDGTVMLTLGAG 445

Query: 454 SC 455
           S 
Sbjct: 446 SI 447


>gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 133/412 (32%), Gaps = 55/412 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIK--GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
              + G++ + + +     F  +   G    G          G     +     A     
Sbjct: 42  NIEIKGVTCNPKKVKEDYLFVCVSEEGERCVG----------GIKASAIIASFSAIPAQG 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +       +      K+        +   +A +TG+ GKT+  E       +     A +
Sbjct: 92  AEIYIFYPNPREIYGKIVSRFYQFKQLKCVAAVTGTNGKTSVVEFCRQIWQNAGCNAASV 151

Query: 141 GSY-----NNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFLTHLV 182
           G+      N        L     D             ++    E     + + R   H +
Sbjct: 152 GTLGTCVNNERKDNNSNLTTPDADDLYFTLRDVNSKNIEHLALEASSHGIDQYRI--HGL 209

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD-DSFFELLKAKSH 240
             + A  T  +  HL     + E   AK  +F E L +  T+ LN D D ++ LLK    
Sbjct: 210 ELNAAAFTNFSQDHLDYHKDVNEYFEAKKRLFYEVLPEGKTVVLNSDIDEYYALLKIAEK 269

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + ++GK+  +D  L +     +   + +++  +   + +  +G   A N+L  +
Sbjct: 270 RSN--KVITYGKT-GSDITLLRQIPTPDGQHLTIKIGDEVYGMFYPVLGQFQAYNLLCAI 326

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIV     D       +  F    GR ++ +              Y   P+++K     L
Sbjct: 327 GIVIASKLDYQRI--CIDKFVSLPGRMEKVK--------PFAFVDYAHTPSALK---QAL 373

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             +  H   + + V G     G   Q+    + ++  +Y    V ++  +  
Sbjct: 374 LSLKWHFSKKVVLVFGC---GGNRDQAKRAKMGKMAKMY-ADKVIVTDDNPR 421


>gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 134/379 (35%), Gaps = 35/379 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R+   +IAI G+ GKTTT  M+   L           +YN  I V   + ++  +   G
Sbjct: 98  MRNFKNVIAIAGTHGKTTTTSMIGYILKKA--------NYNPTILVGAFVKQLGGNFVIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  +    E        +P I VI  I   HL  F  I+ I  +  +    +  +G I
Sbjct: 150 SKDYLVVEACEYVDSFLKFKPTIGVILNIDNDHLDYFKDIDSIKESFRKFAMKIPSSGFI 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-- 281
             N DD   + + +K H      +      + AD               +V+ +   +  
Sbjct: 210 VANCDDKNVKDVISKLHT----QVVCISTKEKADIFADNISYNDGYYEFDVKNKNNEILA 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G+H   N L    + S L  +  T  + LS F    G  +R           L
Sbjct: 266 HIKLNIPGFHNVYNALAAFAVASKLRIESFTIEQTLSEF---CGASRRLEKVGEFNGIYL 322

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            D+ Y  +P  +KA ++ L +           PH   R   +L +  E  +L+       
Sbjct: 323 YDD-YAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKLADK----- 376

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             V  +Y      + G     L   L    I   Y    + +  ++      GD++    
Sbjct: 377 VIVTDVYAAREKNVFGITSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIG 436

Query: 452 SNSCGFYRLINLLLEEFPA 470
           +      + I+++L++ P 
Sbjct: 437 AGDVN--KCIDIILKKAPV 453


>gi|269792484|ref|YP_003317388.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100119|gb|ACZ19106.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 483

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 138/370 (37%), Gaps = 30/370 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  ML + +             +  + +   L  +  +   G  ++ ++
Sbjct: 117 IGVAGTHGKTTTSSMLALVMERCD--------MSPTVAIGGELCDIGCNAKLGSGDVMVA 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L E      L  P +AV+T +   H+ +++ ++++  A       ++  G + +  +D 
Sbjct: 169 ELDESDGSFELFSPQVAVVTNVDWDHVDHYASVDQVTDAFVRFVGKIKDGGALVICAEDG 228

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK-SMEVVHHGI 288
             + +     + G   +  +G   + D+               +V  +G+    +     
Sbjct: 229 GNQRVLNGIQSGGDVHVIRYGWGTSWDWGAVNVHPLKGGGIEADVYRRGELRGHISLSVS 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L T  +  +     ++  K L  F   + R +R   A        + + Y  
Sbjct: 289 GEHNVLNALATCAVADLFGVSFESVAKVLKSFRGAKRRLQRVGSADGID----VLDDYGH 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------Y 399
           +P  +KA IS +    P   GRRI V+         +Q+ + D A VL+L         Y
Sbjct: 345 HPREIKATISAVRGALP---GRRILVVFQ-PHRYTRTQAMYRDFASVLALADRSFILPIY 400

Query: 400 NISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF- 457
                 + G     +  + P  +      ++ +     ++ + V GDVV+   + S    
Sbjct: 401 PADEEPIEGVSSDLIAGSFPDGVGDPVCCDSFEDAVERVRETCVPGDVVLTVGAGSISCL 460

Query: 458 -YRLINLLLE 466
             R++  + E
Sbjct: 461 GERILRSIEE 470


>gi|153940015|ref|YP_001392902.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum F
           str. Langeland]
 gi|166222975|sp|A7GJE2|MURC_CLOBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152935911|gb|ABS41409.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295320879|gb|ADG01257.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           230613]
          Length = 458

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 151/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++     
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKDKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +    I LA++ +        +S      L
Sbjct: 352 PHNKLFCVFQPHTYSRTLTLFDDFTKCFDNADE--IILADIYAAREKDTGIIS---SDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRDRGLKCTNFHKFDDIKNYLIENAKDGDLILTVGAGDI--YKVGEM 454


>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 441

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 135/345 (39%), Gaps = 39/345 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   +IAITGS GK+T  +    ALS+     A  G+          L  +    D  +
Sbjct: 107 DNDKPVIAITGSNGKSTVTDWTGQALSAAGLDVAVGGNIGVP-----ALDLLQHQADIYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  ++  +AV   ++  H+  +  +++  +AK  IF+         
Sbjct: 162 LELSSFQL----ETTSSLKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFDN---ADVRI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD         ++ L   +   F   K  DF         +  +  +Q +       
Sbjct: 215 VNADD-------IATYPLKDSSYLEFSLDKKTDF---AVTTQDDVEFFTLQGKKVLSTSE 264

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L ++  +  D++ A+    V     G   R +  L+ G    +++
Sbjct: 265 ISLVGRHNVSNCLVVLALLHSVGVDIERALP---VIKSYSGLTHRCQVVLDNGGIKWVND 321

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS KAA++ L       EG+   ++G + +  + S     +LA +L   N+  +
Sbjct: 322 SKATNLASTKAALTGLR-----MEGKLFLLVGGVSKGADFS-----ELAPILKNLNV-QL 370

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G    A     P +      E+++ +  +I   +  GDVV++
Sbjct: 371 CCFGQDGDAFMSLHPSAKR---FESINEIIHWISGQMKRGDVVML 412


>gi|145627891|ref|ZP_01783692.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145639341|ref|ZP_01794947.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|144979666|gb|EDJ89325.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145271644|gb|EDK11555.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|309751215|gb|ADO81199.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2866]
          Length = 475

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 150/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  ++ +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYIVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 153

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +G  + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+     +  +PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDVANPPEN--LPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++T  L++  K     G++NNHIG+PLT+ 
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTIL 152


>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
 gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
          Length = 535

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 158/468 (33%), Gaps = 56/468 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 56  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 115

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 233

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   A A +F  +   +  T  +  DD          
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRARTAVVCIDD----DAGRAM 289

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 290 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 350 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 404

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
           + L+        RR+AV+      G+        +  + +      V ++  +       
Sbjct: 405 TTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPT 456

Query: 414 ------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 L  A          E  D         +    GDVV++  K 
Sbjct: 457 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 504


>gi|126643342|ref|YP_001086326.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 448

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 163/426 (38%), Gaps = 53/426 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I H  +  K A ++VV+T +      +       IP+    ++LG L +          
Sbjct: 37  YIGHEAENIKNANVLVVSTAIDPENPEVKAAIEQRIPIVRRAEMLGELMRYR-------- 88

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + 
Sbjct: 89  -HGIAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVA 142

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P  A++T I   H+  +    +++     +    L   G   
Sbjct: 143 EADESDASFL-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAV 197

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD+    +  +      + + ++G +++ D +    +Q   +S   V  +G+  + +
Sbjct: 198 VCGDDANIREILPRV----GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRL 253

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLI 342
             +  G H   N L  +G+ +      +   +AL  F     R +      L +G   L+
Sbjct: 254 TINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLV 313

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---- 398
           D+ Y  +P  ++A I    Q   H + R + +          ++    D  EVLS     
Sbjct: 314 DD-YGHHPKEVEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQL 368

Query: 399 -----YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVK 450
                Y      + G     L  ++     V     + ++G L   +Q+ L   D+++ +
Sbjct: 369 LLLEVYPAGEKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQNVLQPNDLLLTQ 428

Query: 451 SSNSCG 456
            + + G
Sbjct: 429 GAGNVG 434


>gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
 gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
          Length = 473

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 129/391 (32%), Gaps = 47/391 (12%)

Query: 53  GHDFILHAVQKGAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   G   VVV           V       +PV    ++L  L +L       
Sbjct: 59  GH----KAENLGDAAVVVTSTAIKRGNPEVELALEKRVPVVRRAEMLAELMRLKS----- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  M+   L +       I      I    + AR+    D+ + 
Sbjct: 110 ----TVAIAGTHGKTTTTSMVAALLDAGGVDPTVIN--GGIINSYGSNARLGAS-DWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   IAV+T I P HL ++   +++     E  E +   G   L
Sbjct: 163 EADESDGSFLR-----LDGTIAVVTNIDPEHLDHYGSFDKVKDCFVEFVENVPFYGAALL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             D    + +  +      + + ++G S  AD +          +  +V ++ +  +   
Sbjct: 218 CIDHPEVQAIIPRVR---DRKVVTYGFSAQADVRGDNVTPIPGGNRFDVVVRNRDGDTRR 274

Query: 285 -----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  QN L  +G+   +           + F   + R  +          
Sbjct: 275 IEGVTLPMPGRHNVQNALAAIGVALEMNISDAIIATGFAKFGGVKRRFTKVGEVPVGDGV 334

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFH-----IDL 392
             + + Y  +P  ++A   VL+        + IAV+       + +L   F       D 
Sbjct: 335 ATVIDDYGHHPVEIRA---VLAAAREGARAKVIAVVQPHRFTRLRDLMTEFQTAFNDADT 391

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             V  +Y      + G    AL   L +  H
Sbjct: 392 VYVAPVYAAGEAPIDGVDAAALVAGLKQRGH 422


>gi|99036017|ref|ZP_01315056.1| hypothetical protein Wendoof_01000094 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 163

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D+     AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S 
Sbjct: 4   LGLDLSKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSN 63

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               R++A+LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   
Sbjct: 64  Q---RKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGT 120

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +    + L   + + + + D ++VK S       ++   + ++
Sbjct: 121 HFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 163


>gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 459

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 147/401 (36%), Gaps = 39/401 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    + LG + K             +AI+G+ GKTT   M
Sbjct: 77  AAIPSDNPELLEAKEKNIALMDRAEFLGQIMKGHKY--------SVAISGTHGKTTCTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+              + +  I V   L  +  +   G  E  ++   E +       P+
Sbjct: 129 LSHIT--------LADNLDPTILVGGELDAIGGNFRIGNSEYFLTEACEYKRSFLKFPPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +I  I   HL  +  I+EIA    +    + + G +    DD     + ++++     
Sbjct: 181 VGIILNIDSDHLDYYKDIDEIADTFLQFSRLIPEDGYLVGYADDQRVNEILSETNC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIV 303
              S+G S NA+   +     +   +  +V   G +   +  +  G H   N L ++ + 
Sbjct: 237 NTLSYGFSDNANLTAKNIHFNTNGCATFDVYKDGNNLFNITLNVPGKHNILNALASICVS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            I     D  I+        +G  KR+         T+ID+ Y  +P  +KA +S   Q+
Sbjct: 297 LIFNISNDCIIEG---LSNCKGAHKRFEYKGKLNGVTVIDD-YAHHPTEIKATLSTAKQM 352

Query: 364 ---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  +  E    +    I +    +    + +  S     AL
Sbjct: 353 NHNKTYCIFQPHTYTRTKALFDEFTECFNDADEL-ILMDIYAAREKNTGLVSSDELGDAL 411

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           ++   + I+VH   + D    +++S LV GD+++   +   
Sbjct: 412 RNKGLKCINVH---SHDEALNYVKSKLVSGDLLLTVGAGDV 449


>gi|197105784|ref|YP_002131161.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
 gi|254766016|sp|B4RFG2|MURC_PHEZH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196479204|gb|ACG78732.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
          Length = 477

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 157/425 (36%), Gaps = 54/425 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA  +V +T +      +       +P+    ++L  L +L         
Sbjct: 59  FIGHDAKNVEGAYAIVYSTAVKPDNPEMVEGRARRLPLVRRAEMLAELMRLQF------- 111

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  M+   L +     T    G  N +       A      D+ + 
Sbjct: 112 --SIAVGGTHGKTTTTSMVAAILDAGGLDPTVVNGGIINAYGTNAKVGAG-----DWIVV 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    ++     ++  +AV+T I P HL ++   E +  A  +  E +   G   +
Sbjct: 165 EADESDGTFLK-----LKSTVAVVTNIDPEHLDHYGDFEAVKKAFQDFVENIPFYGFAAV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + + A+      + + ++G +  A+ +    +   E +   V +Q +      
Sbjct: 220 CLDHPEVQAMTARVEN---RRLVTYGVNPQAEVRAHNIRMGPEGARFSVVIQPRDGGFIS 276

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +++    G H  QN L  + +   L    D   K L+ F   +   +R+      G  
Sbjct: 277 FDDLLLPMAGQHNVQNALAAIAVARELGVSPDAIRKGLAAFGGVK---RRFTTTGVAGGV 333

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDL 392
            ++D+ Y  +P  + + +     +S   EG+ IAV+       + +L + F       D 
Sbjct: 334 RVVDD-YGHHPVEIASVLKAARAVS---EGKVIAVVQPHRYTRLRDLFEDFCACFNDADT 389

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVK 450
             V  +Y      + G    +L + L R  H          GL   ++     GD+VV+ 
Sbjct: 390 VIVADVYAAGEAPIEGVGKESLVEGLRRYGHRRVLPLPAPAGLAALVREEAHPGDLVVLL 449

Query: 451 SSNSC 455
            +   
Sbjct: 450 GAGDI 454


>gi|145637109|ref|ZP_01792772.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
 gi|145269763|gb|EDK09703.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
          Length = 475

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 148/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIKAAREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|331003528|ref|ZP_08327025.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330412369|gb|EGG91760.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 458

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 156/414 (37%), Gaps = 44/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +          +IP+    ++LG          +      IAI+G+ GKTTT  M
Sbjct: 77  AAVHEDNPEFIKAKGKNIPIMTRAELLG--------YVMSKFKESIAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L    +        +  I V   L ++  ++  G  ++ ++   E       + P 
Sbjct: 129 LSYILLDSGQ--------DPTISVGGVLKKIKGNIHIGSGDVFVTEACEYTNSFLSLNPT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  F  I+EI ++  +        G I +N      E +          
Sbjct: 181 IGVILNIEEDHLDFFKDIDEIRNSFKKFVTNTSDEGCIIINDKIENNEEITENFKG---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            +  +G S+N+D  +   +         ++  +G + + V   + G H   N L ++ + 
Sbjct: 237 KVVRYG-SENSDCFVNNIRYDELGYPTFDLIYKGSTYKDVKLCVGGNHNIDNALASICVA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++     L  F    G  +R+      G  T++D+ Y  +P+ + A +++  + 
Sbjct: 296 FELGVGIEDIKNGLLEFS---GADRRFEIKGKMGNITIVDD-YAHHPSEIAATLNIAKRY 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLS------GFHVLAL 414
                  +  V+         +++F  + A+VL   +   I+ ++ +      G     L
Sbjct: 352 P-----HKRLVIAFQPHTFTRTKAFFEEFADVLKDVDNCIIAKIYPARETDDLGMSAKLL 406

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +     +    +T D +  ++  +L DGD+ +   +      R+  +LL E
Sbjct: 407 SERINSLGGNSRDFDTFDEIENYLLENLCDGDLFITMGAGDI--VRVGEVLLGE 458


>gi|210634199|ref|ZP_03298039.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
 gi|210158889|gb|EEA89860.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
          Length = 474

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 137/404 (33%), Gaps = 45/404 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      +     L IPV+    +L AL             T +A  G+ GKTTT  M+
Sbjct: 85  AIPETNPELMRARELGIPVWHRAKMLSALG---------YGRTTVAAAGTHGKTTTSSMV 135

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  +             +           D ++ + E   S    +      + PH+
Sbjct: 136 ATMLDRMGLD---PSFLIGGVVEGYGTNGKNGDGEYFVVEADESDSSFL-----YLNPHV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T +   H+ ++S +EEI          + + GT+ +  +D     L   +     + 
Sbjct: 188 VIVTNVEADHMDHYSSLEEIEDTFCAFMNLVGEDGTVIVCGEDPHLVELARST----GRA 243

Query: 247 IYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
           + ++G+ +  D          +  +   V L   ++  V   +  G H   N    L   
Sbjct: 244 VLTYGEGEGFDVSCAPMASSHTFGTDFSVTLPDGAVRTVAIKNNPGRHNMLNATAALASA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L  D + A +ALS F   EG  +R+          L+D+ Y  +P  +KA +      
Sbjct: 304 YVLGLDTEDAARALSTF---EGARRRFTHVGETRGVMLVDD-YGHHPTEVKATLHAAKSL 359

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  D  +    + +       ++ ++    + + G     L
Sbjct: 360 DFAKVAVVFQPHRYTRLQALCDDFVDAFADADT-----VVLIDVFPAGEMPIPGVTSKML 414

Query: 415 KDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            D +  +     V Y      L   +   +  GD+++   +   
Sbjct: 415 ADKIRAAHPDKQVRYVADHQALMTCLDEVVQAGDLLITMGAGDV 458


>gi|32265627|ref|NP_859659.1| hypothetical protein HH0128 [Helicobacter hepaticus ATCC 51449]
 gi|32261675|gb|AAP76725.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 493

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 135/346 (39%), Gaps = 24/346 (6%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
            S+  II +TGS GKT+ K  L   L    + YA   S N H G+   + + +    +  
Sbjct: 163 MSRLIIIGVTGSYGKTSMKNFLAQILKEKYRVYATPRSVNTHTGIVADINQNLDYITEIY 222

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  ++  + PH AVI  +   HL  F  +E I   K E+ +   +    
Sbjct: 223 IIEAGARLKGDIALISQFLNPHYAVIGEVGEQHLEYFKSLENIVETKFELLQS-SRLKKA 281

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F+  D+     ++        K I  F ++      +R      + +  E+ ++G+    
Sbjct: 282 FVFKDNPKSPHIEPNI----TKKIQYFPEN------VRNIDANLDGTSFELFIKGEWHHF 331

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + +   L   V+   KA+    P   R  + +         +ID
Sbjct: 332 ETMVLGVFNVVNLSAAIYMGVELGLQVEEIQKAVKRIEPIPHRLNKIQTHQK----LIID 387

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   MK AI    ++    +GR+I V   + E    ++  +I+LA+ +       
Sbjct: 388 DGFNGNLKGMKEAI----RLCSLYQGRKIIVTPGIVES---TKEANIELAQAIDKV-FDI 439

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V ++G     +      +      +    L   ++S     D+V+ 
Sbjct: 440 VIITGELNAKILSKHIYNTQKITLKDKSMLEDMLKSCSQAHDLVLF 485


>gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
 gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
          Length = 472

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 155/432 (35%), Gaps = 47/432 (10%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDV-----------LGALNKLAVAARLRSKATI 110
           + GA + V +           +    + D            L  L + A    L      
Sbjct: 58  ELGATVHVGHAAEHVGDADTVVVSSAIRDTNPELVEARARNLRILPRAAALGALLLGRCG 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  M+T+ L  +      +      IG  L    +  D       +  +
Sbjct: 118 VAVAGTHGKTTTTSMITVVLQHLGAMPGYV------IGGQLVTTGLGADAGADDIIVVEA 171

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +  FL  ++ P +AVIT +   HL N+  +EEI    A     + +  T+ +  DD 
Sbjct: 172 DESDGSFL--MLSPRVAVITNVEADHLDNYGDLEEIHDKFAAFIGRVSE--TVVVGVDDP 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIG 289
               +   +   G+K + ++G++  AD+++R        +   +    G  +       G
Sbjct: 228 GARRVAEVARQRGLK-VLTYGEADTADYRVRDITVDGFTTMFTIDPPTGDPVHCTLPLPG 286

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    + +   +  D + A++ L+ F    G  +R+         ++  +SY  +
Sbjct: 287 RHNTLNAAAAVAVADTIGYDPEVAVEGLAEF---AGAARRFEFKGEANGVSVY-DSYAHH 342

Query: 350 PASM-----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           P  +      A  ++ SQ +  G+  RI VL     +   ++ F  + A   +L     V
Sbjct: 343 PTEIAADLDAARAALDSQAAKGGKAGRIVVLFQ-PHLYSRTRIFAEEFA--AALTKADEV 399

Query: 405 WLSG-------FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            + G              + +   I    V+Y    D     + S    GD+V+   +  
Sbjct: 400 VVLGIYAAREDPEPGVTAELITERIGHDRVYYRPDRDAAVECVVSVAQPGDIVLTMGAGD 459

Query: 455 C-GFY-RLINLL 464
                 R++  L
Sbjct: 460 VTELGPRIVEAL 471


>gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 357

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 116/337 (34%), Gaps = 37/337 (10%)

Query: 135 KTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K Y    +      +   L  M   + D+ + E+    L             IAV T + 
Sbjct: 11  KWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHM--ERVKGCNFKIAVFTNLT 68

Query: 194 PAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             HL       E    K  +F  L       +     LN DD   E  K  + A     +
Sbjct: 69  QDHLDYHGTFLEYKHVKGLLFARLGNDLSTTEKKIAVLNADDPSVEYFKKITSA----EV 124

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G    AD Q +      +     V      +EV  + +G     N L  + +  +  
Sbjct: 125 ITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAITVAIVEG 184

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +     +LS     EGR +      NQ FF ++D  Y   P +++  +S +S+ S   
Sbjct: 185 IPLTNICDSLSNLKSIEGRMEI--IDENQDFFVIVD--YAHTPDALENVLSTISEFS--- 237

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDAL 418
           +G+ I V G     G+        +  +   Y+   V+++  +         +  ++   
Sbjct: 238 KGKVITVFGC---GGDRDAKKRSIMGGIAGSYS-DFVFITSDNPRSEDPQAIMKDIEKGF 293

Query: 419 PRSIHVHYSETMDG--LFLFIQSSLVDGDVVVV--KS 451
            ++ +++Y   +D         +     D+V++  K 
Sbjct: 294 SQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKG 330


>gi|325570066|ref|ZP_08145991.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156894|gb|EGC69065.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 444

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 135/372 (36%), Gaps = 50/372 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              T IA+TGS GKT+T  +L+  LS I+ T   IG    H            D +F  F
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIGDGTGHG---------EPDAEFFSF 153

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   F  I+++ SA   +   ++K    F 
Sbjct: 154 EA-----CEYRRHFLAYSPDYAIMTNIDFDHPDYFHSIDDVFSAFQSMASQVKKGIFAF- 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD +   L+A         IY +G + N D Q +  ++ ++ S  +V + G+++   V
Sbjct: 208 -GDDEYLRKLEADV------PIYYYGVNDNDDVQAKNIERTTQGSEFDVFIHGENIGHFV 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +      D+      +  F   + R      A        I +
Sbjct: 261 LPAFGQHNINNALSVIAVAYKEGLDMKEVAAEMLSFPGVKRRFSEKIVADMT-----IVD 315

Query: 345 SYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Y  +PA +KA I    Q            PH   R IA++ +  E  +L+   H+ L +
Sbjct: 316 DYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLAD--HVYLCD 373

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +      S        +  L + + R   V   E +  L            VV+   +  
Sbjct: 374 IFGSARESR---GDVKIEDLGNKIQRGGTVIKEENVSPLLDH------QNAVVIFMGAGD 424

Query: 455 C-GFYRLINLLL 465
              F      LL
Sbjct: 425 VQKFETAYEKLL 436


>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
 gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
          Length = 767

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 139/415 (33%), Gaps = 41/415 (9%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  +LL   +   I         + GI  DSR ++  + F    G       F+  A +
Sbjct: 241 MSLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCVGSE----SFLSEADK 296

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +GA  VV + ++          +  V+D    L  LA           ++I +TG+ GKT
Sbjct: 297 RGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKT 356

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-------------------MPVDVD 161
           TT  ++     ++        + + +I     L                     +    +
Sbjct: 357 TTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLMAKMLHNGTE 416

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L   +     V   IAV T +   +       EE   A+A++F  +   G
Sbjct: 417 ALVMEASPQELALGK--CDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFARMVDPG 474

Query: 222 T--IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD                 + +F  ++  AD     ++    ++ + V    
Sbjct: 475 RHRKVVNIDDPNATFFVQ--QGNPNVPVVTFAMENTKADVHPLMFELSLFETQVLVNTPQ 532

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  
Sbjct: 533 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPG---RCELIDEEQA 589

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           F +I + +   P  +   +  + ++ P    R I V+G   E     +     +A
Sbjct: 590 FGVIVD-HANTPDGLSRLLDSIRELKP---RRIITVIGCEGENERGKRPLMTKIA 640


>gi|261405378|ref|YP_003241619.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281841|gb|ACX63812.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 458

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 158/443 (35%), Gaps = 55/443 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTD------MVASIGSLSIPVFGVDDVLGAL 95
            A KG       +I H  ++  GA LVV +T              L+IPV         L
Sbjct: 45  LAAKGAKI----YIGHTAEQVQGADLVVYSTALSKDNVERVEAEKLNIPV---------L 91

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + ARL ++   +A+ G+ GKTTT  M+ + +         I      I    T A+
Sbjct: 92  HRAQMLARLLNERKGVAVAGAHGKTTTSSMIALVMEECGVDPTFI--IGGEIMNVGTNAK 149

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
                +  + E   S    +++      P + V+  I   HL N+      + +A  +  
Sbjct: 150 AGEG-EHVVAEADESDGSFLQY-----HPWLGVVLNIEADHLENYEGDFNRLKAAYVQFL 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             ++  GT  +  DD+  + +           + ++G   +A++               +
Sbjct: 204 SQIKADGTAVVCADDNNIQAILPDLKC----NVTTYGIHADAEYTATNLVLGDRHVSFTM 259

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              G  +  V     G H   N + T+             ++A+  F    G  +R++  
Sbjct: 260 LHNGMELGTVELSVPGKHNVYNAMATVICCLKSGISFGAIVEAIVKF---NGAKRRFQVL 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQS 387
                  +ID+ Y  +P  ++A IS           R IAV            +   S++
Sbjct: 317 GEAEGILVIDD-YAHHPTEIEATISAAKAT----GKRIIAVFQPQRYSRTFFLLDAFSRA 371

Query: 388 F-HIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
           F   D   +  +Y       + G     L + + ++ +    Y  T + +   ++  + +
Sbjct: 372 FGEADEVIITDIYSPAGEKQIEGISSGKLVELIVQNSNAGARYLPTKEDVLSDLKGRVKE 431

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD+V+   +     +++   L E
Sbjct: 432 GDLVLTMGAGDI--WKVGAALAE 452


>gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 501

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 140/391 (35%), Gaps = 36/391 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLS 82
             V G ++ +  + P + F A+ G    G DF   A+  GA  ++ +       ++   +
Sbjct: 25  RPVTGATLRASDVRPGDLFAALPGSRAHGADFTAAALAAGAVAILTDPAGAAREAVAQAA 84

Query: 83  IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV   +     L  LA        ++  ++ +TG+ GKTT   ML   L++  +    +
Sbjct: 85  VPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTGTSGKTTVGHMLEAGLAAGGRATGLL 144

Query: 141 GSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG----EIRFLTHLV--------RPHI 186
           G+    I      +L   P   D       M+  G     +   +H +        R  +
Sbjct: 145 GTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERGVTDVAMEVSSHALALDRVAGTRFSV 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDSFFELLKAKSHALG 243
           A  T ++  HL     +++   AKA +F+   + G      +  DD +   L  +     
Sbjct: 205 AAFTNLSQDHLDFHRDMDDYFEAKALLFDP-SRQGAARRRVVCVDDEWGRRLADRHPDA- 262

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                +   +  AD+      Q  + +        G ++ V     G +   N L+ L  
Sbjct: 263 ----VTVATTGPADWTAESVHQDDDGTQSFVAARPGGTVPVRLRLPGRYNVANALVALAC 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +       + A   L+        G+  R    Q F  ++D  Y   PA++ A +   + 
Sbjct: 319 LDAAGVPAEVAAPRLAEL---AVPGRMQRVDAGQDFLVVVD--YAHKPAAVGALL---AA 370

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +     GR + VLG   +     +     +A
Sbjct: 371 LRGQVGGRIVTVLGCGGDRDRGKRPLMGAIA 401


>gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
 gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
          Length = 460

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 151/431 (35%), Gaps = 51/431 (11%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAA 102
           +D       +GA + + +           +         P       LG   +++  + A
Sbjct: 39  NDLAKKLEARGAVIHIGHNAAHVEGADSIVYSTSISKDNPEVIAGQALGIPVMHRSQMLA 98

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R+ ++ T +A+ G+ GKTTT  M++  L         I      +    T A+     D+
Sbjct: 99  RILNERTGVAVAGAHGKTTTTSMISHVLEECGVDPTFI--IGGELMSAGTNAKAGTS-DY 155

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTG 221
            I E   S    + +     RP   ++T+I P HL +F      +  A  +    L+  G
Sbjct: 156 VIAEADESDGSFLEY-----RPMYEIVTSIEPDHLEHFDGDFNNLKQAYVQFLSHLKPDG 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQ 277
              L  DDS    +         KT+ ++    N    A F     +     S  +V  +
Sbjct: 211 KAILCIDDSHVREVMPSVE----KTVVTYAVDPNFVAQAQFSATSIECGDRCSTCQVYHK 266

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + + E+     G H   N L  + +   +    D   +ALS F    G  +R++   + 
Sbjct: 267 DERLGELCLVVPGKHNIANALAAIVVCLDIGLSFDKIAQALSTFS---GAKRRFQIIGDA 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               ++D+ Y  +P  + A +S           R IAV     +    +     + +   
Sbjct: 324 RGVLVVDD-YAHHPTEIIATLSGARA----SGRRVIAVF--QPQRYTRTYFLMDEFSRAF 376

Query: 397 SLYN---ISHVW-------LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG 444
           +  +   I+ ++       + G     L   +  + H    Y  T + +   +   L +G
Sbjct: 377 AEADEVIITDIYSPAGEEKIEGVTSEVLVQKIRTNSHPRAQYIPTKEQMQEHVFKELQEG 436

Query: 445 DVVVVKSSNSC 455
           D+V+   +   
Sbjct: 437 DLVLTMGAGDI 447


>gi|254509590|ref|ZP_05121657.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533301|gb|EEE36289.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
          Length = 469

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV+T +      L       +PV    D+L  L +L            IAI G+
Sbjct: 69  KNAAVVVVSTAIKPGNPELDEARAQGLPVVRRADMLAELMRLRSN---------IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   +          G ++  +     +     +   G  E  +    E  
Sbjct: 120 HGKTTTTTMMAELM--------VAGDFDPTVINGGIIHAYGSNARMGQGEWMVVEADESD 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   +++     E    L   G      D +  + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGDFDQLRDGFHEFVSNLPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMA 293
            +   +  + + ++G +  AD +          +  ++ LQ +            G H  
Sbjct: 232 GR---ITDRRVRTYGFNAQADVRAENLTYKGGVAHFDIHLQYEDKVIEGCTLPMPGDHNV 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L         AL+ F       +R+         T+ID+ Y  +P  +
Sbjct: 289 SNALSAVAVARHLGMKTAQIRDALANFGGVN---RRFTKVGEIDGVTIIDD-YGHHPVEI 344

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVW 405
            A +    Q +   EGR IAV         LS  F          D+  +  ++      
Sbjct: 345 AAVLKAARQAT---EGRVIAV-HQPHRYSRLSSLFDDFCTCFNDADVVAIAEVFAAGEDP 400

Query: 406 LSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR--LI 461
           + G     L   L R  H H     + D L   ++     GD+VV   + +   +   L 
Sbjct: 401 IEGASRDDLVQGLIRHGHRHARAILSEDDLARLVREQARAGDMVVCLGAGTISAWANGLP 460

Query: 462 NLLLEE 467
             L ++
Sbjct: 461 ERLQQK 466


>gi|169794349|ref|YP_001712142.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AYE]
 gi|184159850|ref|YP_001848189.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ACICU]
 gi|213159076|ref|YP_002321074.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|215481905|ref|YP_002324087.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|239503825|ref|ZP_04663135.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB900]
 gi|301344638|ref|ZP_07225379.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB056]
 gi|301513416|ref|ZP_07238653.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB058]
 gi|301596387|ref|ZP_07241395.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB059]
 gi|332850155|ref|ZP_08432542.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332868969|ref|ZP_08438528.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
 gi|189029225|sp|A3M9Y0|MURC_ACIBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711854|sp|B7GV74|MURC_ACIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711855|sp|B7ICE4|MURC_ACIB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470258|sp|B2I1J4|MURC_ACIBC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470266|sp|B0V9F6|MURC_ACIBY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169147276|emb|CAM85135.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii AYE]
 gi|183211444|gb|ACC58842.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078672|gb|ABO13724.2| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii ATCC
           17978]
 gi|213058236|gb|ACJ43138.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|213988079|gb|ACJ58378.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|322509764|gb|ADX05218.1| murC [Acinetobacter baumannii 1656-2]
 gi|323519777|gb|ADX94158.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332731004|gb|EGJ62310.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332733012|gb|EGJ64214.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
          Length = 482

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 159/417 (38%), Gaps = 51/417 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +       IP+    ++LG L +             IA+ G+
Sbjct: 80  KNANVLVVSTAIDPENPEVKAAIEQRIPIVRRAEMLGELMRYR---------HGIAVAGT 130

Query: 117 VGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + E   S    
Sbjct: 131 HGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P  A++T I   H+  +    +++     +    L   G   +  DD+   
Sbjct: 186 L-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            +  +      + + ++G +++ D +    +Q   +S   V  +G+  + +  +  G H 
Sbjct: 241 EILPRV----GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPA 351
             N L  +G+ +      +   +AL  F     R +      L +G   L+D+ Y  +P 
Sbjct: 297 VLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDD-YGHHPK 355

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
            ++A I    Q   H + R + +          ++    D  EVLS          Y   
Sbjct: 356 EVEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAG 411

Query: 403 HVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
              + G     L  ++     V     + ++G L   +Q+ L   D+++ + + + G
Sbjct: 412 EKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQNVLQPNDLLLTQGAGNVG 468


>gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 476

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 157/443 (35%), Gaps = 47/443 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVF 86
           DS+     EA  A+    + GH      +   A  VVV++ + A    L+      IPV 
Sbjct: 42  DSKDSPTVEALRALGVTVHIGH--AAEHLAADATSVVVSSAIRADNAELTAAAERGIPVI 99

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L  L            A  IA+ G+ GKTTT  ML ++L+++          +  
Sbjct: 100 HRSDALAGLMD---------GARPIAVAGTHGKTTTTSMLAVSLTTLG--------LDPS 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L     +   G  E+ ++   E     H   P +A+I  +   H +N++ +EEI
Sbjct: 143 YAIGGDLDAPGSNAQHGGGEIFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMEEI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +     E +   GT+ ++ D      L  +        + ++G+   AD ++    Q 
Sbjct: 203 HESFQTFVERIRPGGTLVVSADHPGARELTGRVTGREGLRVLTYGEDPGADVRVLDIAQR 262

Query: 267 SEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              S + V L     G  +       G H A N +  L   + L         A      
Sbjct: 263 GLTSEVTVLLPDALGGGELTFTVSVPGRHYALNAVAALTAGAALGVPARELAPA---LGS 319

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G  +R +         +I +SY  +P  + A +  +      G+GR + V      + 
Sbjct: 320 YTGVRRRLQLKGVAAGVQVI-DSYAHHPTEISADLEAIRG--GAGDGRVLVVF--QPHLF 374

Query: 383 ELSQSFHIDLAEVLSLYNISHV---------WLSGFHVLALKDALPR-SIHVHYSETMDG 432
             ++   +++ + L+L + S V          + G     + DA  R    V        
Sbjct: 375 SRTRELGVEMGQALALADASVVLDIYPAREDPVPGITSALIIDAAARHGADVVAEHDRTA 434

Query: 433 LFLFIQSSLVDGDVVVVKSSNSC 455
           +   I      GD+V+   +   
Sbjct: 435 VPELIAGMAKPGDLVLTMGAGDV 457


>gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 463

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 156/427 (36%), Gaps = 44/427 (10%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKL 98
           A+    + GH      +   A  VVV++ +            L IPV    D L AL   
Sbjct: 52  ALGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELARAAELGIPVVHRSDALAAL--- 106

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                  +    IA+ G+ GKTTT  ML ++LS++          +    +   L     
Sbjct: 107 ------MTGLRPIAVAGTHGKTTTTSMLAVSLSALG--------LSPSYAIGGDLDAPGS 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +   G  E+ ++   E     H   P +A++  +   H +N++ ++EI  +     + + 
Sbjct: 153 NALHGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYESFETFVDRVT 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ ++ D      L  +     ++ + ++G+S++A  ++        +S + V L G
Sbjct: 213 PGGTLVISADHEGARELTRRVAGRDVR-VVTYGESQDAGVRVLSVVPQGLKSEVTVVLDG 271

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + +       G H A N +  L     L    +    AL+ +   +   +R +       
Sbjct: 272 EELTFTVSVPGRHYAHNAVAALAAGVALGIPAEELAPALAAYTGVK---RRLQLKGEAAG 328

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +SY  +P  M A +  +   +      RI V+     +   +Q    ++ + LSL
Sbjct: 329 VQVI-DSYAHHPTEMTADLEAMRAAAGDS---RILVVFQ-PHLFSRTQELGKEMGQALSL 383

Query: 399 YNISHV---------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + S V          + G     + DA       V        +   I      GD+V+
Sbjct: 384 ADASVVLDIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPSAIAGMAKPGDLVL 443

Query: 449 VKSSNSC 455
              +   
Sbjct: 444 TMGAGDV 450


>gi|297587603|ref|ZP_06946247.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
 gi|297574292|gb|EFH93012.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
          Length = 461

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 143/398 (35%), Gaps = 41/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +   L + V      LGAL +             I ++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAARELGVDVVSRGVFLGALMRNYKY--------SIGVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L   K         +  I +   L  +  +V  G  E  ++   E +       P +
Sbjct: 131 AKILIDAK--------VDPSILLGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+I  I   HL  +  +  I +      + LE+     +N DD   E L +         
Sbjct: 183 AIILNIDEDHLDYYKDLNHIVATFIGYMKNLEENSKAIINIDDKNCEPLLSHIKG----E 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGI 302
           I +FG +++ AD+ +         +    +  +   K  E     IG H   + +  +  
Sbjct: 239 IITFGIENEKADYNIHDITFNENGNPTFVISSEKFDKDEEFSLSIIGRHNIYDAVAAIIA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D+DT  K +  +       +R           +  + Y  +P  +K  +  L +
Sbjct: 299 CYEFHIDIDTIRKNMKEYQNLH---RRMETVGFYKGCEVKTD-YGHHPTEIKNTLKALDE 354

Query: 363 ISPHGEGRRIAVL-------GDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLAL 414
              H +G+   V          M  + + + +F+  D   V  +Y     + S  H   L
Sbjct: 355 ---HKKGKFYCVFQPHTYSRTKML-LDDFANAFYDCDEVIVTEIYAAREKFDSSIHSTDL 410

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            + L    ++  Y +T +    +++S + D D+V+   
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYLRSKVSDNDIVLTTG 448


>gi|254464869|ref|ZP_05078280.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
 gi|206685777|gb|EDZ46259.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
          Length = 465

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 144/419 (34%), Gaps = 49/419 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+    +    A +VV+++ +      L       +PV    D+L  L +L         
Sbjct: 60  FVGQKAENLEEAAVVVISSAIKPGNPELDEARLRGLPVVRRADMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +AI G+ GKTTT  M+   +          G ++  I     +     +   G  E 
Sbjct: 114 ---VAIAGTHGKTTTTTMMAELM--------VAGGFDPTIVNGGIIHAYGSNARMGQGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IAV+T I P H+ ++   + +     E    +   G      
Sbjct: 163 MVVEADESDGSFNRLPATIAVVTNIDPEHMEHWGDFDRLRDGFLEFVSNIPFYGIAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           D +  + L  +   +  + + ++G +  AD +       +  +  +V LQ +        
Sbjct: 223 DHAEVQALVGR---ISDRRVVTYGFNAQADVRAVNLTYKAGVAHFDVVLQAEDRVIEGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L  +     +AL+ F       +R+         T+ID+
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMNSTEIREALAAFGGVN---RRFTKVGEVNGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVL 396
            Y  +P  + A +    Q     EGR IAV         LS  F          D+  + 
Sbjct: 337 -YGHHPVEIAAVLKAARQA---CEGRVIAV-HQPHRYSRLSNLFEDFCACFNEADVVAIA 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
            +++     + G     L   L R  H H       + L   ++     GD+VV   + 
Sbjct: 392 EVFSAGEDPIEGASRDDLVAGLIRHGHRHARALLNEEDLERLVREQARPGDMVVCLGAG 450


>gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 665

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 137/418 (32%), Gaps = 48/418 (11%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+     V G++ DSR +AP   F   KG H+    F+  A  +GA   V   +      
Sbjct: 28  GLDRNQRVTGLTCDSRQVAPGTLFI-RKGAHF-QTKFLEMARDQGAMACVSQEEDTVP-- 83

Query: 80  SLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIAL-----SS 132
              +P   + D   AL  L          K  +I ITG+ GK++T   +   L     S 
Sbjct: 84  --GLPRIAITDTRKALAPLADRFYDHPSGKLKVIGITGTKGKSSTAYYMKSILDRYQESQ 141

Query: 133 IKKTYACIGSYNNHIGV-----------PLTLARMPVDV-----DFGIFELGMSHLGEIR 176
            +     + S + + GV           PL L R   +      ++   E+    L   R
Sbjct: 142 GRGETGVVSSIDTYDGVERFESHLTTPEPLDLQRHFANAAQTGLEYVTMEVSSQALKYHR 201

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            L        A    I   H+S       E+  ++K +IF          +N D    + 
Sbjct: 202 SLC--TEFAAACFLNIGYDHISPIEHPDFEDYFASKLKIFAQ---AHISCVNLDCDHAQR 256

Query: 235 LKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +   + A G   I +F +    A        +   Q    ++    + ++     G    
Sbjct: 257 VLEAAQAAGA-PIITFSQKYPAAQVYASDVHKEDGQILFTLRTPRYTRQMRLTMPGLFNV 315

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L    +   L    + A+    V     G   R     N     L    Y  N  S 
Sbjct: 316 ENALGAAALCEALDIP-EWAVYDGLVRARVPG---RMEVYANADGRVLSIVDYAHNRLSF 371

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +   ++ S +      R +A++      G+ +     DL E    +    V+L+    
Sbjct: 372 E---TLFSSVRAEYPERELAIV--FGCPGKKAYDRRHDLGEAAGAW-CDRVYLTEEDS 423


>gi|170760239|ref|YP_001788888.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A3
           str. Loch Maree]
 gi|229486484|sp|B1KTF0|MURC_CLOBM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169407228|gb|ACA55639.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 458

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 146/410 (35%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++     
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++   +   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVFKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASDMKDKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +         +  +Y          +   L
Sbjct: 352 PHNKMFCVFQPHTYSRTLTLFDDFTKCFDNADE-----IILADIYAAREKDTGIINSNML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRERGLKCTNFHKFDDIKNYLIENAKDGDLILTIGAGDI--YKVGEM 454


>gi|187777470|ref|ZP_02993943.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
 gi|187774398|gb|EDU38200.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 148/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             +AI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKYN--------VAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++     
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLIAYGEDKNIQSIIKEANC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   S+  V+ + K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGSFDVVKNKQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                  +  I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKNEDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +         +  +Y          +   L
Sbjct: 352 PHNKMFCVFQPHTYSRTLTLFDDFTKCFDNADE-----IILADIYAAREKDTGIINSDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +   GD+++   +     Y++  +
Sbjct: 407 GDKLRERGLKCTNFHKFDDIKNYLIENAKTGDLILTVGAGDI--YKVGEM 454


>gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 492

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 161/466 (34%), Gaps = 51/466 (10%)

Query: 16  GHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           G  I   P       + G + D+R + P + FFAI G    G  +   AV  GA  V+ +
Sbjct: 13  GELIASCPAEYADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITD 72

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIA 129
           TD    + +  +PV  + DV   +  +A         K T  A+TG+ GKTTT  M+   
Sbjct: 73  TDGADFVTA-DVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDHI 131

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFGIFELGMSHLG 173
           L+++ +T   IG+    I      A++                       + E+    + 
Sbjct: 132 LNTLGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVSSHAIA 191

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFF 232
           + R     +   +A  T +   HL   + + E   AKA +F E   + G      D  + 
Sbjct: 192 QGRI--ESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFTEKFSRVGVAIT--DTPWG 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIG 289
           E L  +    G + + +     +   Q   W+   +     + L+G+   ++    +  G
Sbjct: 248 EELVKR----GNERVAALASQPD---QPAGWRFTGQADG-TLTLRGENWGTITTSTNLPG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348
                N  + + +V+      +    AL   +    +   R           +    +  
Sbjct: 300 DFNIANAALAIAMVAKAGYSAEAISAALLASNGVNPQVPGRMEVVAEAPRIVV---DFAH 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLS 407
           N  ++  AI  L    P  +G  I + G   +     +      +AE   +  I+     
Sbjct: 357 NEDALTKAIEALR---PSTQGNLIVITGSAGDRDVTKRPLMAKTVAERADVLVITDDDPH 413

Query: 408 GFHVLALKDALPRSI--HVHYSETMD--GLFLFIQSSLVDGDVVVV 449
                 ++  L   I    ++ E  D       + +     D +++
Sbjct: 414 SEDPAHIRADLIAGIPTDTNWIEIADRREAITAMVTDACAEDTILI 459


>gi|110680531|ref|YP_683538.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter denitrificans
           OCh 114]
 gi|123361696|sp|Q163J1|MURC_ROSDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109456647|gb|ABG32852.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter denitrificans OCh
           114]
          Length = 468

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 136/384 (35%), Gaps = 41/384 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+    ++LG L +L            IA+ G+ GKTTT  M+   L +        G 
Sbjct: 95  LPIVRRAEMLGELMRLKSN---------IAVAGTHGKTTTTTMVATLLDA--------GE 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           ++  +     +     +   G  E  +    E     + +   IA++T I P H+ ++  
Sbjct: 138 FDPTVVNGGIIHAYGSNARKGEGEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWGD 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + +     +    +   G      D    + L  K   +  + + ++G +  AD +   
Sbjct: 198 FDTLRQGFLDFVSNIPFYGVAVCCTDHPEVQALVGK---ITDRRVITYGFNAQADVRAVN 254

Query: 263 WKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +     ++ +V LQ  G  +E       G H   N L  + +   L    +    AL+ 
Sbjct: 255 LRYAGGVAYFDVALQAEGTVIEGCSLPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAA 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F       +R+         T+ID+ Y  +P  + A +    Q +   EGR IAV     
Sbjct: 315 FGGVN---RRFTRVGEIDGVTIIDD-YGHHPVEIAAVLKAARQAT---EGRVIAV-HQPH 366

Query: 380 EMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM- 430
               LS  F          D+  +  +Y      + G     L   L R  H H    + 
Sbjct: 367 RYSRLSSLFDDFCACFNDADVVGIAEVYAAGEDPIPGAGRDDLVAGLIRHGHRHARAVVG 426

Query: 431 -DGLFLFIQSSLVDGDVVVVKSSN 453
            D L   ++     GD+VV   + 
Sbjct: 427 EDDLERLVREQTRPGDMVVCLGAG 450


>gi|329895281|ref|ZP_08270923.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
 gi|328922403|gb|EGG29746.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
          Length = 479

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 144/404 (35%), Gaps = 42/404 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +     +     IP      +L  L +             IA+ G+ GKTTT  M+
Sbjct: 84  AVAPDNVEYQAARDARIPTVPRAQMLAELMRYR---------HGIAVAGTHGKTTTTSMI 134

Query: 127 TIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               ++     TY   G  N       + A++     + I E   S    +        P
Sbjct: 135 ASVFAAAGLDPTYVIGGRVNQ----SGSNAKLGASH-YLIAEADESDASFLHLT-----P 184

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T I   H+  +   ++++     E    L   G+  L  DD   + L  + +   
Sbjct: 185 MVSVVTNIEADHMDTYGGDLQQLRKTFIEFLHNLPFYGSAVLCLDDPEIKALIPQIN--- 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGI 302
            ++I ++G+  +AD+ +R  K     S  ++Q      + +  +  G H   N   T  +
Sbjct: 242 -RSILTYGQDPDADYCIRSIKAAGAASDFQLQTPNHGVLALRVNSPGLHNVLNAAATAAV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+ F     R ++     +     ++ + Y  +P  ++A ++  +Q
Sbjct: 301 ALDEGLPIAAVQDGLANFAGVGRRFEQLGRLQHARGQAVLVDDYGHHPTEVEATLNSAAQ 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLA 413
           + P    R + V          ++  + D   VLS          Y      + G    +
Sbjct: 361 VWPE--SRVVMVY--QPHRFTRTRDLYDDFVRVLSRCDVLILLDVYAAGEAEIPGADSKS 416

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L  ++ +   V   Y+  +D +   + S L   DV++ + + + 
Sbjct: 417 LARSIRQRGLVDPIYAAGIDEVPELLASILAADDVLITQGAGNI 460


>gi|238752432|ref|ZP_04613909.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709365|gb|EEQ01606.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 507

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 136/418 (32%), Gaps = 45/418 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 103 AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 153

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 154 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 205

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+         +          L   G   +  DD     L  +      +
Sbjct: 206 AIVTNIEADHMDTYQGDFGNLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G S +AD Q+  ++Q   Q    ++   K +  V  +  G H A N    + + +
Sbjct: 262 HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNAAAAVAVAT 321

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + D  ++AL+ F     R              +    ++ + Y  +P  + A I  
Sbjct: 322 EEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKA 381

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFH 410
                P  + R + +          ++  + D A VLS          Y      + G  
Sbjct: 382 ARAGWP--DKRIVMIF--QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGAD 437

Query: 411 VLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +L   +     V        + +   +   L   D+++V+ + + G  ++   L E
Sbjct: 438 SRSLCRTIRNRGKVDPILVSDSETVPEVLAQMLDGDDLILVQGAGNIG--KIARKLAE 493


>gi|71900694|ref|ZP_00682817.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71729515|gb|EAO31623.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 439

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 120/363 (33%), Gaps = 43/363 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  ++   LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFR---------HGIAVAGTHGKTTTTSLIAAVLSEGG- 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                      +      A++     + + E   S    +R     + P +AV+T I   
Sbjct: 142 -LDPTFVIGGQLLAAGANAKLGAG-QWLVVEADESDGSFLR-----LNPLVAVVTNIDAD 194

Query: 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL N+      I  A  E  + L   G   L  DD     L  K+     + + ++G   
Sbjct: 195 HLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELAGKAR----RHVMTYGIDA 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            AD +     Q   + +  + L  GK + V     G H   N L    +   L    +  
Sbjct: 251 AADVRAEDVVQDGARMYFTLCLPEGKVIPVTLALPGRHNVLNALAASAVGWQLGVPPEVI 310

Query: 314 IKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +AL  F    G G+R+      A+  G    + + Y  +P  ++A   V +        
Sbjct: 311 GRALKSFV---GIGRRFNDLGDVAIGNGACVRLIDDYGHHPRELEA---VFAAARGGWPD 364

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPR 420
           +R+ V             F    A VLS         +Y    V + G    AL  A+  
Sbjct: 365 KRLVVAFQPHRYSRTRDQF-DAFAAVLSSVDALVLSEVYPAGEVPIPGADAKALARAIRA 423

Query: 421 SIH 423
              
Sbjct: 424 RGR 426


>gi|319897394|ref|YP_004135591.1| udp-n-acetylmuramate:l-alanine ligase [Haemophilus influenzae
           F3031]
 gi|317432900|emb|CBY81266.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3031]
          Length = 475

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 148/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILISDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|114566364|ref|YP_753518.1| UDP-N-acetylmuramate--alanine ligase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|123322290|sp|Q0AYQ7|MURC_SYNWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114337299|gb|ABI68147.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 465

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 134/365 (36%), Gaps = 33/365 (9%)

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML + L++     + I      +      A++    D+ + E   S    + 
Sbjct: 116 HGKTTTTSMLYMVLANCGTEPSFI--VGGELQGSELNAKLGRG-DYFVVEADESDASFLD 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +RP+IA+IT +   HL  +  ++ I  A  +  E +   G   L   D+F   L 
Sbjct: 173 -----LRPYIALITNVEDDHLDYYKSVDNIRKAFRQFVEQIRPEGFAMLYGGDAFNRSLV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQ 294
                   K +  +G+  + D+    W+     S  +V  +  G          G H A 
Sbjct: 228 KDLTL--NKRLLFYGEDLSNDYYFLNWESIGLGSHFDVYKRELGFLGRFELAVPGKHNAL 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +     L  +++    AL  FH   G  +R++    +   T++D+ Y  +P  ++
Sbjct: 286 NALAAIASALELGLEMEPIKSALKNFH---GARRRFQIQGQKALVTVVDD-YAHHPTEIR 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV 411
           A I           GR I V          +Q     L E L   +   I+ V+ +G   
Sbjct: 342 ATIDAARNF---HSGRVIVVY--QPHRYSRTQLLGRQLGEALINADLAIITEVYSAGEEA 396

Query: 412 L-------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +         + A     H  Y    + +  ++     + D+++   +     ++L   L
Sbjct: 397 IPGISGEVVCQAAQSIGCHSVYIPQREEIIPYLLQICQENDLIITMGAGDI--WKLGLQL 454

Query: 465 LEEFP 469
           LE  P
Sbjct: 455 LEVLP 459


>gi|158426180|ref|YP_001527472.1| UDP-N-acetylmuramate--L-alanine ligase [Azorhizobium caulinodans
           ORS 571]
 gi|172047924|sp|A8HZ95|MURC_AZOC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158333069|dbj|BAF90554.1| UDP-N-acetylmuramate-alanine ligase [Azorhizobium caulinodans ORS
           571]
          Length = 467

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 52/428 (12%)

Query: 44  FAIKGPHYDGHDFI--LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
              K  + DG + +    A+++       +   + +  +  +PV    ++L  L +L   
Sbjct: 57  VGHKAENIDGAEVVVVSSAIKR-------DNPELLAARAKRLPVVRRAEMLAELMRLKSC 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    +AI G+ GKTTT  ++   L         I      I    T AR+    D
Sbjct: 110 ---------VAIAGTHGKTTTTSLVATLLDKGGFDPTVIN--GGIINAYGTNARLGAG-D 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   +A+IT I P HL +F   +++  A     E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPAEVAIITNIDPEHLDHFKTFDKVQEAFRTFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + L  +      + I ++G++  AD +L         +   V  + ++ 
Sbjct: 213 FAVMCIDHPVVQALVGRIE---DRRIITYGENPQADVRLVDVDLRGGITRFGVVFRDRAG 269

Query: 282 EVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              H          G H A N    + +   L    D  I+A+  F   + R  R     
Sbjct: 270 TAEHRIDGLKLPMPGKHNALNATAAIAVARELRVPDDRIIEAIGGFGGVKRRFTR----T 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF---- 388
            +     I + Y  +P  + A   VL       EG+ IAV+       +  L   F    
Sbjct: 326 GEWKGATIFDDYGHHPVEISA---VLRAARAATEGQVIAVVQPHRYTRLASLFDEFCTCF 382

Query: 389 -HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD 445
              D   V  +Y      + G     L   L    H  V   +  + L   +      GD
Sbjct: 383 NDADHVIVAPVYAAGESPVPGADSEHLVQGLRARGHRSVTALKGPEELAGLVAGLAKPGD 442

Query: 446 VVVVKSSN 453
            V+   + 
Sbjct: 443 FVICLGAG 450


>gi|148381488|ref|YP_001256029.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930938|ref|YP_001385863.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934724|ref|YP_001389270.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. Hall]
 gi|166222973|sp|A7FPH5|MURC_CLOB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222974|sp|A5I7S3|MURC_CLOBH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148290972|emb|CAL85108.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926982|gb|ABS32482.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930638|gb|ABS36137.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           Hall]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 150/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEITKAKEKNIKLMDRADFLGNLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  ++      
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEASC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKDKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +    I LA++ +        +S      L
Sbjct: 352 PHNKLFCVFQPHTYSRTLTLFDDFTKCFDNADE--IILADIYAAREKDTGIIS---SDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRDRGLKCTNFHKFDDIKNYLIENTKDGDLILTVGAGDI--YKVGEM 454


>gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
          Length = 487

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 144/428 (33%), Gaps = 45/428 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    D+L AL +             + + G+ GKT+T  M
Sbjct: 81  AAIPQDNPELVAAKDNDIPVIRRSDLLAALMEGHKQ---------VLLAGTHGKTSTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              A+             +    +   L R   +   G  E  ++   E         P 
Sbjct: 132 TVSAMQHAG--------LDPSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYSPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+TTI P HL  F   E       +  + +  +TG + +  +D        ++   GI
Sbjct: 184 VAVLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAGERALERGI 243

Query: 245 KTIYSFGKSKN---------ADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHMA 293
             + ++G ++          A+    +       + +++ L G  +++       G+HM 
Sbjct: 244 -NVVAYGSAEKSFTSTVPLAAELVREETTAEGMDTTVKLDLPGVSETVRYELQIPGHHMV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  L    +         + L+ F     R +       QG    + + Y  +P  +
Sbjct: 303 LNSMGALIAGVLSGGAPAAIAEGLADFSGVRRRFEYRGSVDKQGKPVRVFDDYAHHPTEV 362

Query: 354 KAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
            A +        +    GR IA       +   +  F  + A+         VL +Y   
Sbjct: 363 AAVLRAARAKVEAEGHGGRVIACF--QPHLYSRTMEFDAEFAQALSLADAAVVLDIYGAR 420

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              + G     + D +P  + V +          + S +  GDVV+   + S     +  
Sbjct: 421 EQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSVTM--VAA 478

Query: 463 LLLEEFPA 470
            +L+E  A
Sbjct: 479 EILDELRA 486


>gi|257465205|ref|ZP_05629576.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
 gi|257450865|gb|EEV24908.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
          Length = 475

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 141/416 (33%), Gaps = 45/416 (10%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV ++ +  S   +       IPV     +L  + +             IAI G+ 
Sbjct: 77  GASVVVASSAIDESNPEVAAAKEARIPVIQRAQMLAEIMRFR---------HGIAIAGTH 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+++  +  K         N  +              + I E   S    +  
Sbjct: 128 GKTTTTAMISMIYTEAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFLH- 183

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               ++P ++V+T I P H+  +    E++          L   G   +  DD     + 
Sbjct: 184 ----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFYGLAVMCADDETVMEIA 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQN 295
            K      + + S+G S+ AD+++  ++Q   Q    V    G+ +EV+ +  G H A N
Sbjct: 240 PKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTVVCPTGERIEVLLNVPGRHNALN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L +        +  + AL+ F     R  +    +      ++ + Y  +P  +  
Sbjct: 296 ATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDV 355

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWL 406
            I    Q       R + V          ++    D  +VLS          Y      +
Sbjct: 356 TIKAARQ--GWENKRVVMVF--QPHRYSRTRDLFDDFVQVLSQVDALIMLNVYAAGEAPI 411

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYR 459
            G     L  ++     V          L   +   + DGD+++ + + +     R
Sbjct: 412 VGAESKDLCRSIRTLGKVDPILVSDTSQLGEVLDQIIQDGDLILAQGAGNVSKLSR 467


>gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 481

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 165/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYNILSQRYPT-ALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVKNGRSHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|148652337|ref|YP_001279430.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|189029024|sp|A5WCT9|MURC_PSYWF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148571421|gb|ABQ93480.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 476

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 156/425 (36%), Gaps = 44/425 (10%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAA 102
             + GHD     +   A +VVV++ +      +       +PV    D+LG L +     
Sbjct: 66  EVFIGHD--SKNIAN-ADVVVVSSAIDRENPEIQAALKAQLPVVRRADMLGELMRYR--- 119

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                   IA+ G+ GKTTT  +LT+ ++        +      IG  L  +     +  
Sbjct: 120 ------HGIAVAGAHGKTTTTSLLTMMMTEAGFDPTYV------IGGKLNASGKNASLGE 167

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
             + +  +   +  FLT  + P  A++T I   H+  +    +++ +A  +  + +   G
Sbjct: 168 SRYLIAEADESDASFLT--LHPMAAIVTNIDQDHMDTYGNSFDKLKAAYIQFLQNMPFYG 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
              +  DD     +         + + +FG   + + Q    +    ++   V  + +  
Sbjct: 226 LAVVCGDDKELFDMIDDI----GRPVLTFGLEPHNNVQATNVRVDGTKTHFTVLRKDREP 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+  +  G H   N L  + + +    + D   +AL+ F     R ++  C        
Sbjct: 282 LELTLNIPGQHNVLNALAAITMATDEGVNDDAIKRALAKFAGVGRRFEQQACVAKDDGDV 341

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDL 392
           L+ + Y  +P  + A I       P    RR+ +L            +         +D+
Sbjct: 342 LLIDDYGHHPVEVAATIKAARASYPE---RRLVMLFQPHRYSRTRDCYDDFVAVLSQVDV 398

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKS 451
             +L +Y+     + G    +L  ++     V       D L   +Q  L  GD+++ + 
Sbjct: 399 LLLLDVYSAGEAPIVGADTKSLARSIRLRGEVEPVVVDKDELAPVMQRVLQAGDMLITQG 458

Query: 452 SNSCG 456
           + + G
Sbjct: 459 AGNVG 463


>gi|170755790|ref|YP_001783188.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B1
           str. Okra]
 gi|229486483|sp|B1IH05|MURC_CLOBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169121002|gb|ACA44838.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B1 str.
           Okra]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 147/410 (35%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++     
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASDMKDKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +         +  +Y          +   L
Sbjct: 352 PHNKMFCVFQPHTYSRTLTLFDDFTKCFDNADE-----IILADIYAAREKDTGIINSNML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRERGLKCTNFHKFDDIKNYLIENAKDGDLILTVGAGDI--YKVGEM 454


>gi|229846170|ref|ZP_04466282.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
 gi|229811174|gb|EEP46891.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
          Length = 475

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 148/422 (35%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + ++ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINILL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++  L  +       +
Sbjct: 346 YGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSLVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|313143839|ref|ZP_07806032.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128870|gb|EFR46487.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 490

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 138/347 (39%), Gaps = 26/347 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
            S+  II +TGS GKT+ K  LT  L    + YA   S N H G+   +   +    +  
Sbjct: 160 MSRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGIVADINNNLDYTTEIY 219

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  ++  + PH AVI  +   HL  F  +E I   K E+ +        
Sbjct: 220 ITEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENIVETKFELLQSKRLKKAF 279

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                  F + LK ++    +    ++   +N    +R  +   E +  ++ ++ +    
Sbjct: 280 V------FKDNLKPQNLDNALAKKITY-FPEN----VRNVEANLEGTSFDLFIKNEWHRF 328

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + +   L   V+   KA+    P   R  + +         +ID
Sbjct: 329 DTMVLGQFNVVNLSAAIYMGVELGLRVEEIQKAVKRIEPIPHRLNKIQT----NQKLIID 384

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   MK AI    ++S   EGR+I V   + E    ++  +I+LA+ +       
Sbjct: 385 DGFNGNLKGMKEAI----RLSSLYEGRKIIVTPGIVES---TKEANIELAKAIDEV-FDI 436

Query: 404 VWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++G  +   L D +  +  +   +    L   ++S     D+V+ 
Sbjct: 437 AIITGELNARTLADNIHNTQKII-IKDKSMLEDMLKSCSQPHDLVLF 482


>gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
 gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
          Length = 481

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 165/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYNILSQRYPT-ALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVKNGRSHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Variovorax paradoxus S110]
 gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           S110]
          Length = 520

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 138/422 (32%), Gaps = 46/422 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR +   + F A  G   DG   +  A+ +GA   +V      + G      +     +
Sbjct: 25  DSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAEAFGFDGDERIASYPGL 84

Query: 92  LGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------------- 136
             A   +A A      +   ++A+TG+ GKT+T   L  +LS++                
Sbjct: 85  KAATGPIASAFYDNPSAALEVLAVTGTNGKTSTAWWLAESLSTLAVPGGVRAPRLDGSAE 144

Query: 137 ------YACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIR 176
                  A +G+    +   L                 R  V+  FG   +  S +G   
Sbjct: 145 RGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRELRALVERGFGACAIEASSIGIAE 204

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 R  +AV T     HL     ++    AKAE+F          +N DD     L 
Sbjct: 205 RRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAELF-RWPGLRAAVINIDDVHGASLC 263

Query: 237 AK--SHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYH 291
           A      +G   +++   +   A    R     ++     V          +    IG +
Sbjct: 264 ANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQGLRFSVAEHDNDAVERMSTGLIGQY 323

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L  LG +  L   +  A+ A S      GR +R   A       L    Y   P 
Sbjct: 324 NVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRMERVGAADANAAAPLAVVDYAHTPD 383

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++  A++ L  ++    G    V G   +   + +     +AE         V ++  + 
Sbjct: 384 ALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRPMMAAVAE----RQADRVVVTSDNP 439

Query: 412 LA 413
            +
Sbjct: 440 RS 441


>gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 449

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 148/404 (36%), Gaps = 45/404 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    + +     L + V    D+L  L ++            IAI+GS GKTTT  M
Sbjct: 73  SAISNVNEELLKAKELGLQVISRGDMLADLFRMKEG---------IAISGSHGKTTTTSM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++          + I   +  + +   L     +   G  EL +S   E       +   
Sbjct: 124 ISHI--------SHIAGLDPTVLIGGILQTFGSNAVLGKSELLISEADESDGSFLKLNSV 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   H+  +   E+I  A  +    +   G   +N DD+    + +K H    K
Sbjct: 176 INVVTNIDKEHIGYYKDYEDIKEAFVKFINNVPFYGASVVNIDDTGVRSILSKIH----K 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I ++G  ++ DFQ +     S+ +  +V  +G  +  +     G H   N L ++ + +
Sbjct: 232 KIITYGI-ESGDFQAKNIVFNSDNTRFDVFYKGIKLNTIELQIPGIHNVYNALASIAVST 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
           ++  +      AL  F   + R +       +    LI + Y  +P  +K+    L    
Sbjct: 291 LMEIEQPVIRDALKSFKNAKRRIEFV----GEKNTNLIYDDYGHHPTEIKSVYEALKSKY 346

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R   ++ D  ++ +      +D   +L +Y  S     G   L +
Sbjct: 347 KDKNIVVVFQPHRYSRTYYLIDDFVDLFKS-----LDKVFLLDIYGASEENTFGISSLDM 401

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            + + +   V Y  + + LF  +        V+V   + S G +
Sbjct: 402 INKVSKEECV-YIPSKEELFDRLDEL--KDSVIVFMGAGSIGQW 442


>gi|283835153|ref|ZP_06354894.1| UDP-N-acetylmuramate--alanine ligase [Citrobacter youngae ATCC
           29220]
 gi|291069453|gb|EFE07562.1| UDP-N-acetylmuramate--alanine ligase [Citrobacter youngae ATCC
           29220]
          Length = 491

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 135/408 (33%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M++   +     
Sbjct: 97  AAHEARIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      +   ++G S +
Sbjct: 200 MDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSDD 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  QG   + V  +  G H A N    + + +    + +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLVRQGMADLRVTLNAPGRHNALNAAAAVAVATEEGIEDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +    ++ + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKTGTAMLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--ALPRSIHV 424
               V+         ++  + D A VL+  +      V+ +G   +   D  +L R+I  
Sbjct: 375 ---LVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAAIPGADSRSLCRTIRG 431

Query: 425 H------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                         +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVSDPALVAEMLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|301169879|emb|CBW29483.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           10810]
          Length = 475

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 147/422 (34%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|126726622|ref|ZP_01742462.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703951|gb|EBA03044.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
          Length = 463

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 132/383 (34%), Gaps = 39/383 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV    ++L  L +L            IAI G+ GKTTT  ++   L          G 
Sbjct: 95  LPVVRRAEMLAELMRLKSN---------IAIAGTHGKTTTTTLVAELL--------VGGG 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            +  +     +     +   G  E  +    E     + +   IAV+T I P H+ ++  
Sbjct: 138 MDPTVINGGIIHAYGSNARMGQGEWMVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGS 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + +    A+    +   G      D    + L  +      + I +FG +  AD +   
Sbjct: 198 FDALRQGFADFVGNIPFYGLAVCCTDHPEVQALVGRIR---DRRITTFGVNAQADVRALN 254

Query: 263 WKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +  + ++  ++QL+ +     +      G H   N L  + +   L         AL  
Sbjct: 255 LRYENGRALFDIQLKAEGQMIEDCSLPMPGEHNVTNALAAVAVARHLGMKKAEIRTALEN 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--LGD 377
           F       +R+      G   +ID+ Y  +P  + AA+    Q      GR IAV     
Sbjct: 315 FGGVN---RRFTRVGEVGGAIVIDD-YAHHPVEIAAALRAARQ---STTGRVIAVHQPHR 367

Query: 378 MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TM 430
              + +L   F       D+  +  +Y      + G +   L   L    H H       
Sbjct: 368 FSRLHDLFDDFCACFNDADVVAISDVYAAGEAPIEGANRDDLVAGLVAHGHRHALALQNE 427

Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453
           + L   I++    GD+V+   + 
Sbjct: 428 EALLDLIKTEAKPGDMVICLGAG 450


>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
          Length = 452

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 145/409 (35%), Gaps = 47/409 (11%)

Query: 57  ILHAVQKGAGL------VVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLR 105
           I   +  GA +      ++        + S  +P     +  V  +   +      A   
Sbjct: 46  IAELLAMGAAVETGGHGLLTFRRQDLIVVSPGVPMDTPELKQVRALGVEMIGEVELASRF 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              +++AITGS GKTTT  ++   L          G+    +   +  +    D  + + 
Sbjct: 106 LNGSVVAITGSNGKTTTTSLIGEILRGAGVPTLVGGNIGLPVVEMVAEST---DTTWSVL 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L           P IAV+  I P HL      E+ A AK  I E       + L
Sbjct: 163 EISSFQL----ETVETFAPKIAVVLNITPDHLDRHGTFEKYAEAKTRITEMQTPADFLVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           N +D   +++ AK+ A     I+ F   +     +++       S + +  +G   E V 
Sbjct: 219 NAEDKPTQMVAAKTKA----QIFWFSPRRP----IKQGAFVHGDSILFLPREGGKAEPVM 270

Query: 285 ----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H  +N+L  +    +     +   + +  F   +    R +         
Sbjct: 271 PVSEIPLVGAHNVENVLAAVCACRLAGVSSEKIREGVRGFKAVD---HRLQFVAEVAGVK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  +   A++         EG  + +LG     G+   S + +L ++L    
Sbjct: 328 YYNDSKATNVDATAKALASF-------EGNVLLILG-----GKDKGSDYTELNDLLRERV 375

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ V+  G     ++  L   + + ++ET++            GD V++
Sbjct: 376 VT-VYTIGSAAEKIETQLAGVMTLKHAETLERAVALATEDAKAGDTVLL 423


>gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
 gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
          Length = 474

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 140/349 (40%), Gaps = 35/349 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162
                TIIA+T S GKT+ K  +   L      Y    S N   G+   +   +P   + 
Sbjct: 150 ETIDPTIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTLAGIIKDINTALPQVCEV 209

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E G    G+I  +T  +  H AV+  + P H+  F  +E I + K EI    ++   
Sbjct: 210 YVVEAGARERGDILEITKFLNHHYAVVGKVGPQHIEYFKTLENIIATKLEILHS-KRLKK 268

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            FL      ++ L  K     +K    FG +      ++  K   +    +++LQG+   
Sbjct: 269 AFL------WDGLPVKDDPKFVK----FGSN------IKNVKADLDGVSWDLELQGEIFH 312

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+   + +   L  D+ T  K +S     E R +R       G   +I
Sbjct: 313 FQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKGVEHRLQRIE----AGGKVII 368

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+N N   M A+  ++     +  GR++ V   + E  E S   +I+LA+ ++     
Sbjct: 369 DDSFNGNLEGMIASYELVK----NYPGRKVVVTPGIVESDEKS---NIELAKKINEV-FD 420

Query: 403 HVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
              ++G      K+ L ++I +     E    L   +      GD+++ 
Sbjct: 421 LAIITG---KINKEVLQKNITIEKIMVEDKKQLQNLLAKHTKSGDLILF 466


>gi|224437375|ref|ZP_03658347.1| hypothetical protein HcinC1_05382 [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 138/347 (39%), Gaps = 26/347 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
            S+  II +TGS GKT+ K  LT  L    + YA   S N H G+   +   +    +  
Sbjct: 162 MSRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGIVADINNNLDYTTEIY 221

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  ++  + PH AVI  +   HL  F  +E I   K E+ +        
Sbjct: 222 ITEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENIVETKFELLQSKRLKKAF 281

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                  F + LK ++    +    ++   +N    +R  +   E +  ++ ++ +    
Sbjct: 282 V------FKDNLKPQNLDNALAKKITY-FPEN----VRNVEANLEGTSFDLFIKNEWHRF 330

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + +   L   V+   KA+    P   R  + +         +ID
Sbjct: 331 DTMVLGQFNVVNLSAAIYMGVELGLRVEEIQKAVKRIEPIPHRLNKIQT----NQKLIID 386

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   MK AI    ++S   EGR+I V   + E    ++  +I+LA+ +       
Sbjct: 387 DGFNGNLKGMKEAI----RLSSLYEGRKIIVTPGIVES---TKEANIELAKAIDEV-FDI 438

Query: 404 VWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++G  +   L D +  +  +   +    L   ++S     D+V+ 
Sbjct: 439 AIITGELNARTLADNIHNTQKII-IKDKSMLEDMLKSCSQPHDLVLF 484


>gi|138896357|ref|YP_001126810.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166224692|sp|A4IRW1|MURC_GEOTN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134267870|gb|ABO68065.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 434

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 137/396 (34%), Gaps = 47/396 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   LS+PV      LG L          SK T IA+TGS GKTTT  +
Sbjct: 68  NAFPDTHEEIEAARQLSVPVIRYHRFLGELA---------SKFTSIAVTGSHGKTTTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   +     T   IG             +      + +FE       E R       P 
Sbjct: 119 LAHVMQGAHPTSYLIGDG---------TGKGEPGSKYFVFEA-----CEYRRHFLSYFPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I   H   F+ I+++ SA  ++ + ++K   I    DD + + ++AK       
Sbjct: 165 YAIITNIDFDHPDYFANIDDVFSAFQQMAQQVKKG--IVACGDDPYLQNIQAKV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I  +G  +  DFQ R   + +E +  +V ++            G H   N L  + +  
Sbjct: 217 PILFYGLGEENDFQARNIVKTTEGTAFDVFVRNTFFASFTIPRFGTHNVLNALAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D  T    L  F   +    R       G   LID+ Y  +P  + A +    Q  
Sbjct: 277 YEGIDAGTIAARLQTFQGVK----RRFTEKTVGRQVLIDD-YAHHPREIMATLEAARQKY 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
           P  E   +A+          +Q+F  + AE L      +V+L      A +     SI  
Sbjct: 332 PGRE--VVAIF--QPHTYTRTQTFLSEFAESLQQ--ADYVYLCDIFGSAREHHGKLSIRD 385

Query: 424 -VHYSETMDGLFLFIQSSLVDG-DVVVV-KSSNSCG 456
                     L     S L    D V+V   +    
Sbjct: 386 LQEKIPRSQLLEEQNVSVLKQHRDAVLVFMGAGDIQ 421


>gi|116253047|ref|YP_768885.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|189029026|sp|Q1ME34|MURC_RHIL3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115257695|emb|CAK08793.1| putative UDP-N-acetylmuramate--L-alanine ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 471

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 159/432 (36%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +PV    ++L  L +   A
Sbjct: 54  EVFVGHR----AENLGEAEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFRNA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI G+ GKTTT  ++   L +       I      I    T ARM    +
Sbjct: 110 ---------IAIGGTHGKTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-E 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   +AVIT I P HL ++   + + +A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + L  +      + I ++G++  AD + +  +    +S  +V+++ +  
Sbjct: 213 FGVMCLDHPEVQSLVGRIE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRT 269

Query: 282 EVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             V           G H   N    + + + L        K L+ F   +   +R+    
Sbjct: 270 GQVIELKGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVK---RRFTLTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
                 + D+ Y  +P  +KA   VL       +GR IAV        L  + E  E + 
Sbjct: 327 EWNGVQIFDD-YGHHPVEIKA---VLRAARESCKGRVIAVHQPHRFSRLASLFE--EFAA 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   +  +Y      + G   ++L   +    H    +  + + L   +      
Sbjct: 381 CFNDADSIFLAPVYAAGEDPIEGIDSVSLVSRIKSGGHRDARFLTSAEFLPQMVAEVAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV+  + S 
Sbjct: 441 GDFVVLLGAGSI 452


>gi|84501756|ref|ZP_00999928.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
 gi|84390377|gb|EAQ02936.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
          Length = 469

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 140/402 (34%), Gaps = 43/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       +PV    ++L  L +L            IAI G+ GKTTT  M
Sbjct: 78  SAIKPGNPELDEARRRGLPVVRRAEMLAELMRLKSN---------IAIAGTHGKTTTTTM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +        G  +  +     +     +   G+ E  +    E     + +   
Sbjct: 129 VATLLDA--------GGIDPTVINGGIIHAYGSNARVGLGEWMVVEADESDGTFNRLPAT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   + +     +    +   G      D    + L  +   +  +
Sbjct: 181 IAVVTNIDPEHMDHWGDFDTLRQGFLDFVSNIPFYGLAVCCTDHPEVQNLVGR---ITDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +          +  +V LQ  G  ++       G H   N L  + +
Sbjct: 238 RVATYGFNAQADIRAVNLTYRKGVAHFDVLLQAEGDRIDGCSLPMPGDHNVSNALSAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D    AL+ F       +R+      G  T+ID+ Y  +P  + A +    Q
Sbjct: 298 ARHLGMKKDEIRTALANFGGVN---RRFTRVGEVGGVTVIDD-YGHHPVEIAAVLKAARQ 353

Query: 363 ISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLA 413
            +   EGR IAV        L  + E  +    F+  D+  +  +Y      + G     
Sbjct: 354 AT---EGRVIAVHQPHRYTRLHTLFE--DFCACFNEADVVAIAEVYAAGEDPVPGATRDD 408

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L   L R  H H     + D L   ++    +GD+VV   + 
Sbjct: 409 LVAGLIRHGHRHARAINSEDDLERLVREQAQEGDMVVCLGAG 450


>gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Edwardsiella ictaluri 93-146]
          Length = 469

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 146/458 (31%), Gaps = 55/458 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87
           +DSR  A  + F A+ G   DG  FI  A+ +G   V+   +  A  GS+     +PV  
Sbjct: 1   MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEM---LTIALSSIKKTYACIGS 142
           ++ +   L+ L      +  +   ++ +TG+ GKTTT ++       L         +G+
Sbjct: 61  LNRLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120

Query: 143 YNNHIGVP-----------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                  P             + R   D    +  + +S  G ++     +    +  T 
Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E  A AK  +F     +G   +N DD    L   K       T+    
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFS-THHSGEKIVNADDEMGLLWLDKLPDAVAVTVTGVL 239

Query: 252 KSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               A               + +          +    +G     N+L+ L  +  L   
Sbjct: 240 PEGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLLALGYP 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +     A     P  GR + ++          +   Y   P +++ A   L     H +G
Sbjct: 300 LAALCAASVQLQPVCGRMEVFQAPAK----PTVVVDYAHTPDALEKA---LLAARLHCQG 352

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS--------------LYNISHVWLSGFHVLALK 415
           +   + G   +     +     +AE  +                 I +  LSG     L 
Sbjct: 353 QLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLA 412

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A+P       +  M              DV++V  K 
Sbjct: 413 MAIPGRAEAVTAAVMQAA---------PQDVILVAGKG 441


>gi|150397282|ref|YP_001327749.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium medicae
           WSM419]
 gi|166224733|sp|A6UB84|MURC_SINMW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150028797|gb|ABR60914.1| UDP-N-acetylmuramate--alanine ligase [Sinorhizobium medicae WSM419]
          Length = 471

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 149/407 (36%), Gaps = 47/407 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     +PV    ++L  L +   A         IAI G+ GKTTT  M+
Sbjct: 75  AIKKDNPELIAAREKFLPVVRRAEMLAELMRFRNA---------IAIGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I      I    T ARM    ++ + E   S    ++     +   I
Sbjct: 126 AALLDAGGLDPTVIN--GGIINAYGTNARMGAG-EWMVVEADESDGTFLK-----LPADI 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I P HL ++   + + SA  +  E +   G   L  D    + +  K      + 
Sbjct: 178 AVVTNIDPEHLDHYGSFDAVRSAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIE---DRK 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLMT 299
           + ++G++  AD +    +     S  +++++ +         ++     G H   N    
Sbjct: 235 VVTYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEIKDLRLPMPGRHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L    +   + ++ F   +   +R+          + D+ Y  +P  +KA   V
Sbjct: 295 VAVAQRLGIKPEDIARGIASFGGVK---RRFTLTGEWNGARIFDD-YGHHPVEIKA---V 347

Query: 360 LSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFH 410
           L       +GR +AV        L  + E  + +  F+  D   +  +Y+     + G +
Sbjct: 348 LRAAREACQGRIVAVHQPHRYSRLSSLFE--DFTSCFNDADTILLAPVYSAGEEAIDGVN 405

Query: 411 VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             AL + +  + H    +    + L   +      GD VV+  + S 
Sbjct: 406 SEALVNRIKAAGHRDARHISGQEALAPVVAKIAQPGDFVVLLGAGSI 452


>gi|196249983|ref|ZP_03148678.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
 gi|196210497|gb|EDY05261.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
          Length = 434

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 137/396 (34%), Gaps = 47/396 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   LS+PV      LG L          SK T IA+TGS GKTTT  +
Sbjct: 68  NAFPDTHEEIEAARQLSVPVIRYHRFLGELA---------SKFTSIAVTGSHGKTTTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   +     T   IG             +      + +FE       E R       P 
Sbjct: 119 LAHVMQGAHPTSYLIGDG---------TGKGEPGSKYFVFEA-----CEYRRHFLSYFPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I   H   F+ I+++ SA  ++ + ++K   I    DD + + ++AK       
Sbjct: 165 YAIITNIDFDHPDYFANIDDVFSAFQQMAQQVKKG--IVACGDDPYLQNIQAKV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I  +G  +  DFQ R   + +E +  +V ++            G H   N L  + +  
Sbjct: 217 PILFYGLGEENDFQARNIVKTTEGTAFDVFVRNTFFASFTIPRFGTHNVLNALAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D  T    L  F   +    R       G   LID+ Y  +P  + A +    Q  
Sbjct: 277 YEGIDAGTIAARLQTFQGVK----RRFSEKTVGRQVLIDD-YAHHPREIMATLEAARQKY 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
           P  E   +A+          +Q+F  + AE L      +V+L      A +     SI  
Sbjct: 332 PGRE--VVAIF--QPHTYTRTQTFLSEFAESLQQ--ADYVYLCDIFGSAREHHGKLSIRD 385

Query: 424 -VHYSETMDGLFLFIQSSLVDG-DVVVV-KSSNSCG 456
                     L     S L    D V+V   +    
Sbjct: 386 LQEKIPRSQLLEEQNVSVLKQHRDAVLVFMGAGDIQ 421


>gi|169634770|ref|YP_001708506.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           SDF]
 gi|229470259|sp|B0VNZ8|MURC_ACIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169153562|emb|CAP02734.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii]
          Length = 482

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 159/417 (38%), Gaps = 51/417 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +       IP+    ++LG L +             IA+ G+
Sbjct: 80  KNANVLVVSTAIDPENPEVKAAIEQRIPIVRRAEMLGELMRYR---------HGIAVAGT 130

Query: 117 VGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + E   S    
Sbjct: 131 HGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P  A++T I   H+  +    +++     +    L   G   +  DD+   
Sbjct: 186 L-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            +  +      + + ++G +++ D +    ++   +S   V  +G+  + +  +  G H 
Sbjct: 241 EILPRV----GRPVITYGFNEDNDIRAIDVERDGMRSHFTVLRKGREPLRLTINQPGLHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPA 351
             N L  +G+ +      +   +AL  F     R +      L +G   L+D+ Y  +P 
Sbjct: 297 VLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDD-YGHHPK 355

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
            ++A I    Q   H + R + +          ++    D  EVLS          Y   
Sbjct: 356 EVEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAG 411

Query: 403 HVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
              + G     L  ++     V     + ++G L   +Q+ L   D+++ + + + G
Sbjct: 412 EKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQNVLQPNDLLLTQGAGNVG 468


>gi|227822650|ref|YP_002826622.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
 gi|254766017|sp|C3MEM8|MURC_RHISN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227341651|gb|ACP25869.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
          Length = 469

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 150/407 (36%), Gaps = 47/407 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     +PV    ++L  L +   A         IAI G+ GKTTT  M+
Sbjct: 75  AIKKDNPELIAAREKFLPVVRRAEMLAELMRFRNA---------IAIGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I      I    T ARM    ++ + E   S    ++     +   I
Sbjct: 126 AALLDAGGLDPTVIN--GGIINAYGTNARMGAG-EWMVVEADESDGTFLK-----LPADI 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I P HL ++   + + +A  +  E +   G   L  D    + +  K      + 
Sbjct: 178 AVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIE---DRK 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMT 299
           + ++G++  AD +    +     S  +V+++ +    V           G H   N    
Sbjct: 235 VITYGENPQADVRYHNVRMDGATSVFDVEIRRRRTGQVIQLNGLRLPMPGRHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L  + +   K L+ F   +   +R+         ++ D+ Y  +P  +KA   V
Sbjct: 295 VAVAQRLGMEPEAIAKGLASFGGVK---RRFTLTGEWNGASIFDD-YGHHPVEIKA---V 347

Query: 360 LSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFH 410
           L       +GR +AV        L  + E  + S  F+  D   +  +Y      + G +
Sbjct: 348 LRAAREACQGRIVAVHQPHRYSRLSSLFE--DFSACFNDADTILIAPVYAAGEDAIDGVN 405

Query: 411 VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             AL +++  + H    +    + L   +      GD VV+  + S 
Sbjct: 406 SQALVNSIKAAGHRDAQFLTGPEALAPVVSKIAQPGDFVVLLGAGSI 452


>gi|121535922|ref|ZP_01667718.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305493|gb|EAX46439.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 183

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             VV   IG H   N L  + +   L    +     L  F      G R       G +T
Sbjct: 2   FAVVLPAIGRHNVYNALAAIAVGLGLGLAPEEIAAGLKKF---APSGMRQHIEKKAG-YT 57

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I+++YNA+P SM++AI  L++I+    GR+IAVLGDM E+G +++  H  + + L+   
Sbjct: 58  IINDAYNASPLSMQSAIETLAEIA---GGRKIAVLGDMLELGHVAKEAHRRVGKQLAEIG 114

Query: 401 ISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +  V   G     +               +T +     ++  +  GD ++VK S      
Sbjct: 115 VDTVITVGTLARDIAVTAKACGVACAIACDTHEEAKDVLRQVMQAGDTILVKGSRGMKME 174

Query: 459 RLIN 462
           ++++
Sbjct: 175 KVLD 178


>gi|331092522|ref|ZP_08341344.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400743|gb|EGG80346.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 461

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 148/404 (36%), Gaps = 43/404 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +  A     +IP+    ++LG L               IA++G+ GKTTT  M
Sbjct: 77  AAIHEDNEEFAEAVRQNIPMLSRAELLGQLMTNYEC--------PIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L          G  +  I V   L  +  ++  G   + ++   E         P 
Sbjct: 129 LSHVL--------LEGEKDPTISVGGILKAINGNIRVGNSGVFVTEACEYTNSFLHFLPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALG 243
           I++I  +   H+  F  I++I  +     + L   + GT+ +N +    E ++A +  L 
Sbjct: 181 ISIILNVEEDHMDFFKDIDDIRQSFHRFAQLLPQNEEGTLIINGE---IEKIEAITDGLT 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
            + + ++G   + D+  +         +  +    G+  + +     G H   N L  + 
Sbjct: 238 CR-VLTYGLHGDYDYSAKNISYNETGCTSFDFYRFGEFADRISLSVTGEHNVSNALSAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    +++  K L  F    G  +R+        FT+ID+ Y  +P  + A +S + 
Sbjct: 297 VGELTNVPLESIKKGLLSFS---GTDRRFEYKGELNGFTIIDD-YAHHPTEITATLSSVK 352

Query: 362 Q---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A   +  E   LS + H+ L ++ +      +   G    
Sbjct: 353 HYPHRETWCIFQPHTYTRTKAFFHEFAE--ALSLADHVLLVDIYAARETDTL---GMSSE 407

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L + + +     HY      +  F+    +  D+++   +   
Sbjct: 408 LLAEEIKKLGTDAHYFPDFKSVENFVLKHCIHDDLLITMGAGDV 451


>gi|294651909|ref|ZP_06729199.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822232|gb|EFF81145.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 481

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 148/414 (35%), Gaps = 45/414 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +        P+    ++LG L +             IA+ G+
Sbjct: 79  KHADVLVVSTAIDPENPEVKAAIEQRTPIVRRAEMLGELMRYR---------HGIAVAGT 129

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT         S+  T    G+ +    +   L    V+   G   + ++   E  
Sbjct: 130 HGKTTTT--------SLLTTMLAEGNLDPTYVIGGLLNSTGVNAALGDSRIIVAEADESD 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P  A++T I   H+  +    +++     +    L   G   +  DD+    +
Sbjct: 182 ASFLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREI 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQ 294
             +      + + ++G  ++ D +    +Q   +S   V  + +  + V  +  G H   
Sbjct: 242 LPRV----GRPVITYGFDEDNDIRAIDVEQDGMRSHFTVLRKDREPLRVTVNQPGLHNVL 297

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +G+ +      D   +AL+ F     R +             + + Y  +P  ++
Sbjct: 298 NALAAIGVATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVDDYGHHPKEVE 357

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVW 405
           A I      + H + R + +          ++    D  EVLS          Y+     
Sbjct: 358 ATIKAAR--ASHPDRRLVMLF--QPHRYSRTRDCFDDFVEVLSQVDQLLLLEVYSAGEKP 413

Query: 406 LSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
           + G    AL  ++     V     + +DG L   +Q  L   D+++ + + + G
Sbjct: 414 IVGADSRALARSIRLRGEVEPILVDPVDGNLPNVLQKVLQGNDLLLTQGAGNVG 467


>gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
 gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
          Length = 481

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 174/496 (35%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +F++ A+ +G G
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFKK-EFLISAISQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFEL 167
                LS    T A + + N  +               + L  M            + E+
Sbjct: 128 FAYNILSQRYPT-ALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVKNGRTHLVMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             ++++ DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------ENQDHDFYGSQSSNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         + + D +   I+  V              +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E +P
Sbjct: 459 C---YQIVQGKKEAYP 471


>gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
 gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
          Length = 535

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 145/475 (30%), Gaps = 54/475 (11%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P   +  I  DSR       + A +G H DG DF+ +A++KGA  VV  TD + S    
Sbjct: 31  LPDIEITSIRHDSRVCDQGSIYCAFRGLHEDGIDFMDNALEKGAAAVV--TDRLPSRPHE 88

Query: 82  SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P   V+    A   L         S   +I +TG+ GK+TT E L   L         
Sbjct: 89  GVPYIVVEAPRQAYALLCGSFFGNPASALKVIGVTGTDGKSTTIEYLWQLLRGQGVRAGL 148

Query: 140 IGSY----------------NNHIGVPLTLARMPVDVDFG--IFELGMSHLG-EIRFLTH 180
           + +                         +      D      I E     L  E   L  
Sbjct: 149 LSTVSWDDGSGLVSSPYRQSTPEAWELHSFLSSCRDHGLSIVILETTSHALSMEYDRLAG 208

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKS 239
           +     A+ TT+   HL     +E    AK  +   L     + + +D++   +++KA  
Sbjct: 209 IA-FSGAIYTTMTSEHLEFHGSLERYVDAKLNLARRLLPGSPLVIPHDNARKDDIMKAAP 267

Query: 240 HALGIKTIYSFGKSKNAD-----------FQLRKWKQCSEQSWMEVQLQGKSME--VVHH 286
            A    T    GKS                         EQ      +  K +       
Sbjct: 268 QAKPFITAVHHGKSSGCSRKEDGILNGTCISATVLGMEPEQLAFTFAINDKELTTLWRFP 327

Query: 287 GIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +  N L    +   L    ++  I       P  G  +      + G   LID  
Sbjct: 328 SPFPFLLSNALEAAAMAHSLIDIPLEAIIAQFEKLSPVRG--RAIPVPNSLGVTVLID-- 383

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNI-SH 403
           +     +    +  +S++ P  +     V G   E     ++      A   S   I   
Sbjct: 384 FAHTADAFAHVMEEISRVHPKAD--ITVVFGAAGERDTTKRAPMGAQAARWCSRIIITDE 441

Query: 404 VW-LSGFHV------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                G+          + DAL R   +              ++L  GDV+++  
Sbjct: 442 DPRNEGYEAIRKDIEAGIPDALKRRRTILRIADRKRAIREAVANLNRGDVLLLLG 496


>gi|225028221|ref|ZP_03717413.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
 gi|224954533|gb|EEG35742.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
          Length = 466

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 147/388 (37%), Gaps = 37/388 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL    +A   +S    IA+ G+ GKTTT  MLT  L             +  + V 
Sbjct: 104 TRAALLGQIMANFAKS----IAVAGTHGKTTTTSMLTHIL--------LQADTDPTVSVG 151

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L R+  ++  G  +L ++   E         P  ++I  +   H+  F  IE+I ++ 
Sbjct: 152 GMLDRIGGNIRVGHSDLFLTEACEYTNSFLEFYPLYSIILNVEEDHMDFFKDIEDIKNSF 211

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ- 269
            +        G I +N D    + +    + L  K + +FG + + D+         E  
Sbjct: 212 HKFASQTADDGLIIINGDMGHTDFIL---NGLSQKHV-TFGLNPDNDYTAADITFDKEGN 267

Query: 270 -SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S+  +    +   +     G H   N L  +     +   +D   K L  F    G  +
Sbjct: 268 ASYNLIAHGQEKGRITLKVKGRHNVMNSLAAIACTEAIGLPLDAIRKGLLSFG---GTHR 324

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMC 379
           R+    + G  T+ID+ Y  +P  ++A +S               PH   R  A L +  
Sbjct: 325 RFEYKGSLGDVTVIDD-YAHHPTEIRATLSAAKDYPHDELWVIFQPHTYTRTKAFLPEFA 383

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +   L Q+ HI LA++ +   +    +S   V+ L         VHY  + + +  F+++
Sbjct: 384 K--ALEQADHIVLADIYAAREVDTGEVSSKDVMKLLQ--EDGQDVHYFPSFEEIKDFVKA 439

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   D+++   + +     +   LL E
Sbjct: 440 HVKGHDLLITMGAGNV--VEIGEELLAE 465


>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
 gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 453

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 134/385 (34%), Gaps = 45/385 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V  +   +       IPV G  ++                  +IAITGS GKTTT  +  
Sbjct: 78  VPFDQPQLEQARKQGIPVIGEIELAAQF----------VPGHVIAITGSNGKTTTTSLCG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L S  K     G+        ++ A++  D  + + E+    L  I       RP IA
Sbjct: 128 DILQSGGKKTLVGGNIGTP---AISFAQLANDDTWSVLEISSFQLETIERF----RPEIA 180

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I  I P HL      E+ A+AK  IFE   +     LN D+     +  +  +     +
Sbjct: 181 AILNITPDHLDRHGTFEKYAAAKERIFENQREHDFAILNADNEPCVEIAKRVKS----QV 236

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---HHGIGYHMAQNMLMTLGIVS 304
             F +       ++      E        +G+   +        G H  +N+L  + +  
Sbjct: 237 LWFSRQHE----VKHGTFVREDKIYFRDPKGEREIMPVADMLLKGAHNVENVLAAVCVGV 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
             +   +   KA+S F   E    R             ++S   N  +   A+   S+  
Sbjct: 293 AASVAPEQIRKAVSQFKAVE---HRLEYTATVKGVDYYNDSKATNVDATIKALESFSKG- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    +LG     G+   S +  L ++L       V+  G     + +A  + + V
Sbjct: 349 ------VHLILG-----GKDKGSPYTVLNDLLHER-AKTVYTIGAAAAKI-EAEVKGVEV 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ET++          V GDVV++
Sbjct: 396 VHAETLENAVKLASQKAVKGDVVLL 420


>gi|299139512|ref|ZP_07032686.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598440|gb|EFI54604.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
          Length = 450

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 125/348 (35%), Gaps = 36/348 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++ ITGS GKTTT  ++     +  +     G+    +     L        + + E
Sbjct: 106 QGEVVGITGSNGKTTTTTLMGEIFKAAGRPTLVGGNIGKPVTE---LVGESTPEAWSVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP IA++  I P HL      E  A+AKA I E       + LN
Sbjct: 163 VSSFQL----ETVESFRPRIAMVLNITPDHLDRHGNFENYAAAKARITEFQTAEDFLILN 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            +D   +++ AK+ A     IY F   +    Q+++      ++      +G   E V  
Sbjct: 219 AEDKPTQMVAAKTKA----QIYWFSPRR----QVKQGAFVHGETIFFTPSEGAKPEPVMP 270

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  +    +     +T   A++ F   E    R            
Sbjct: 271 VAEIPLAGAHNVENVLAAVCAARLAGVASETIRAAVAAFKAVE---HRLEFVREHNGVRY 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +   A+   +       GR   +LG     G+   S +  +  +L    +
Sbjct: 328 YNDSKATNVDATVKAVEAFA-------GRIYLILG-----GKDKDSDYAVMGPLLRER-V 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G     ++  L   + +  +ETMD        + V GD V++
Sbjct: 375 KMVITIGSAAEKIEHQLAGVVKIERAETMDRAVALAHEAAVAGDTVLL 422


>gi|319786253|ref|YP_004145728.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464765|gb|ADV26497.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 479

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 137/403 (33%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IPV     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPVVPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLTAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P +AVIT
Sbjct: 140 -----GGLDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLMAVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      + SA AE+ + L   G   L  DD     L A++     + + +
Sbjct: 190 NIDADHLENYGGDFARLRSAFAELLQRLPFYGLAVLCIDDPEVASLAAETP----RHVMT 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G ++NAD +     Q   +    ++L  G S+ V     G H   N L    +   L  
Sbjct: 246 YGTAENADVRAEDIVQEGPRMRFTLRLPEGASVPVTLALPGRHNVLNALAAAAVGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  AL  F    G G+R+          G    + + Y  +P  + A   V +   
Sbjct: 306 APQAIAAALEKF---AGIGRRFNDLGEVTTATGAKVRVVDDYGHHPRELAA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   D+   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSEADALVLSEVYPAGEAPIPGADSRALA 418

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +             +  L   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQVAELRSVLPDVLQDGDLLLMMGAGDIG 461


>gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
 gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
          Length = 481

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 176/495 (35%), Gaps = 70/495 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L  + G     +     + IS DSR I+    FF +KG ++   +++  A+  G 
Sbjct: 16  NFREVL--VNGEYYYHLEGTSFDAISYDSRKISASTLFF-VKGANFKK-EYLEQAISNGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
           G  V   D       + IP   V+D+  A++   +        +  ++A TG+ GKTT  
Sbjct: 72  GFYVSEKDY-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV---DFGIFELG 168
                 L       A + + N  +               L L  M  +    D     + 
Sbjct: 127 YFAYHILKQS-HRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAEAVANDRTHLIME 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +    + +   + V   I+P H+        E+    K  +   ++ +  + +N
Sbjct: 186 VSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---MKNSQAVVIN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVV 284
            D   F +LK +             + +  DF   + +   E S        GK + +  
Sbjct: 243 SDMDHFSVLKEQV------------EDQEHDFYGSQSENQIENSKAFSFSATGKLAGDYD 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG+   +N +        L A ++   K ++        G+        G    ID 
Sbjct: 291 IQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAK---TRVPGRMEVLTQKNGAKVFID- 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+K  +SV   +  H  G    VLG     G   +S   D   +L  +    V
Sbjct: 347 -YAHNGDSLKKLLSV---VETHQTGTISLVLGS---TGNKGESRRKDFGLLLEDHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFL-FIQSSLVDGDVVVV--KSSNS 454
           +L+         LA+ + +    +  V      +      + ++    D V++  K ++ 
Sbjct: 400 FLTADDPNYEDPLAIAEEISSFITRPVEKIADREEAIQRAMATTSKPEDAVIIAGKGADC 459

Query: 455 CGFYRLINLLLEEFP 469
              Y+++N + EE+P
Sbjct: 460 ---YQIVNGIKEEYP 471


>gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
 gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
          Length = 495

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 146/419 (34%), Gaps = 52/419 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    +VL  L +             + ++G+ GKT+T  M
Sbjct: 84  AAIPKDNPELVEAHRRGIPVILRPEVLADLME---------GYRTLLVSGTHGKTSTTSM 134

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             + L          G+ +  +G  L  +        G   +  +   +   L +   P 
Sbjct: 135 AVVGLQHCG------GNPSFAVGGELNESGTNAFHGTGDVFVAEADESDGSLLQY--SPD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---L 242
           + V+T +   HL  F   E+  +      E +   GT+ +  DD     L  ++HA    
Sbjct: 187 VVVVTNVEADHLDFFGSEEKYVAVFDAFTERIRPGGTLVVCLDDPGSAALGQRTHAALRA 246

Query: 243 GIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQGKSME-----VVHHGIG 289
               ++ +G+  + D         +L  +K  +E   ++V+   ++ +     ++    G
Sbjct: 247 RGVRVFGYGEGTHRDLAPDVTLIAELLDYKPRAEGGMLKVRFSDENRQVTERAIMLSVPG 306

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HMA N +     V  L       I  +  F    G  +R++    +    + D+ Y  +
Sbjct: 307 KHMALNAIAATIAVVNLGYPTAKVIAGIESFG---GVHRRFQLRGTEDGVRVFDD-YAHH 362

Query: 350 PASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--------- 398
           P  ++A ++  +++       GR I        +   ++ F  + AE LSL         
Sbjct: 363 PTEVRAVLTAAAEMVAKQAVPGRVIVAF--QPHLYSRTEQFAAEFAEALSLADHVVALDV 420

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           Y      L G     + + +  +  V Y  +   +   +      GDVV+   +     
Sbjct: 421 YGAREAPLPGITGERIAEKV--TTDVTYVPSQADVAGTVVDIARPGDVVITMGAGDVTM 477


>gi|226953384|ref|ZP_03823848.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226835861|gb|EEH68244.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 481

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 148/414 (35%), Gaps = 45/414 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +        P+    ++LG L +             IA+ G+
Sbjct: 79  KHADVLVVSTAIDPENPEVKAAIEQRTPIVRRAEMLGELMRYR---------HGIAVAGT 129

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT         S+  T    G+ +    +   L    V+   G   + ++   E  
Sbjct: 130 HGKTTTT--------SLLTTMLAEGNLDPTYVIGGLLNSTGVNAALGDSRIIVAEADESD 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P  A++T I   H+  +    +++     +    L   G   +  DD+    +
Sbjct: 182 ASFLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREI 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQ 294
             +      + + ++G  ++ D +    +Q   +S   V  + +  + V  +  G H   
Sbjct: 242 LPRV----GRPVLTYGFDEDNDIRAIDVEQDGMRSHFTVLRKDREPLRVTVNQPGLHNVL 297

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +G+ +      D   +AL+ F     R +             + + Y  +P  ++
Sbjct: 298 NALAAIGVATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVDDYGHHPKEVE 357

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVW 405
           A I      + H + R + +          ++    D  EVLS          Y+     
Sbjct: 358 ATIKAAR--ASHPDRRLVMLF--QPHRYSRTRDCFDDFVEVLSQVDQLLLLEVYSAGEKP 413

Query: 406 LSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
           + G    AL  ++     V     + +DG L   +Q  L   D+++ + + + G
Sbjct: 414 IVGADSRALARSIRLRGEVEPILVDPVDGNLPSVLQKVLQGNDLLLTQGAGNVG 467


>gi|182677686|ref|YP_001831832.1| UDP-N-acetylmuramate--L-alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229486470|sp|B2IGG1|MURC_BEII9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182633569|gb|ACB94343.1| UDP-N-acetylmuramate--alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 476

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 145/418 (34%), Gaps = 54/418 (12%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +      L       +PV    ++L  L +L            +A+ G+ G
Sbjct: 67  AAVVVVSTAIKRDNPELVHARELRLPVVRRAEMLAELMRL---------KQCVAVAGTHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L + K     I      I    T AR+    D+ + E   S    ++  
Sbjct: 118 KTTTTSLVATLLDAGKFDPTVIN--GGIINAYGTNARLGAG-DWMVVEADESDGTFLK-- 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   IA++T I P HL +F   + I  A     E +   G   +  D    + L   
Sbjct: 173 ---LPADIAIVTNIDPEHLDHFKTFDAIKQAFRAFIENIPFYGFAVMCLDHPVVQELVG- 228

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL------QGKSMEVV------HH 286
              +  + I ++G++  AD +L         S   V +      QGK  E          
Sbjct: 229 --TIEDRRIITYGENPQADMRLVDVNLDGGMSRFNVVVRDRKAGQGKRFEERRVEDLLMP 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N    L +   L    D    AL  F   + R  R      +     I + Y
Sbjct: 287 MPGLHNALNATAALSVALQLGMSDDAIRSALRGFGGVKRRFTR----TGEWNGAQIFDDY 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMG----ELSQSFH-IDLAEVLSLY 399
             +P  + A   VL       +G+ IAV+       +     E +  F+  D+  V  +Y
Sbjct: 343 GHHPVEIAA---VLRAARASTKGQVIAVVQPHRYTRLHSLFNEFASCFNDADVVIVADVY 399

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 + G     L  AL    H         + L   I+S    GD VV   + + 
Sbjct: 400 AAGEPPIDGADKEHLMRALKAFGHRQAMVLRAPEDLPALIRSLAHPGDYVVCLGAGNI 457


>gi|241205556|ref|YP_002976652.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859446|gb|ACS57113.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 471

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 154/415 (37%), Gaps = 53/415 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  S   L       +PV    ++L  L +   A         IAI G+ G
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFRNA---------IAIGGTHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L +       I      I    T ARM    ++ + E   S    ++  
Sbjct: 118 KTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-EWMVVEADESDGTFLK-- 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +
Sbjct: 173 ---LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGYH 291
                 + I ++G++  AD + +  +    +S  +V+++ +    V           G H
Sbjct: 230 IE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + + + L        K L+ F   +   +R+          + D+ Y  +P 
Sbjct: 287 NISNATAAIAVANRLGISSADIAKGLASFGGVK---RRFTLTGEWNGVQIFDD-YGHHPV 342

Query: 352 SMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNIS 402
            +KA   VL       +GR IAV        L  + E  E +  F+  D   +  +Y   
Sbjct: 343 EIKA---VLRAARESCKGRVIAVHQPHRFSRLASLFE--EFAACFNDADSIFLAPVYAAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G   ++L   +    H    +  + + L   +      GD VV+  + S 
Sbjct: 398 EDPIEGIDSVSLVSRIKSGGHRDARFINSAELLPQMVAEVAKPGDFVVLLGAGSI 452


>gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 511

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 141/431 (32%), Gaps = 45/431 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH------ 59
           T H LL+ +       +P   +  I+ DSR++     F  + G   DG  F         
Sbjct: 4   TLHALLRQVAWQIPEGLPDPLLQQITCDSRAVQDGTLFLGLPGERVDGGRFWRQALEAGA 63

Query: 60  ---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               +   A  V+        +         + ++  A  +        S+  +I +TG+
Sbjct: 64  AAAVIGPSAAAVLPPAAHEPVVVVGEPVARQLGELAAAFWEQ-----PSSRLALIGVTGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------V 160
            GKTTT  ++    ++I    A  G+  N        A                      
Sbjct: 119 NGKTTTTHLIEHLATAIGTPTALFGTLVNRWPGHSITATHTTGFADRLQGQLAAAASAGA 178

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEK 219
             G  E+    L + R      R   AV T +   HL   + ++    AKA +F   L +
Sbjct: 179 QLGAMEVSSHALAQQR--VAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFADPLLQ 236

Query: 220 TG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +G     +N DD +   L  +      ++  S      A+ ++   +  +      +   
Sbjct: 237 SGPARAVVNSDDPWGLQLAERLGDRCWRSSLS---EPGAELRMSDLEMTARGVRGRLITP 293

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQ 336
                 V   +G     N+L  +G++      +   ++A+  F    GR +R      + 
Sbjct: 294 LGEGPFVSPLLGRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPGADA 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   Y   P  ++   + L+   P   GR I V G     G+  +     +A + 
Sbjct: 354 HALPTVLVDYAHTPDGLE---NALAASRPFSRGRLICVFGC---GGDRDRGKRPQMASIA 407

Query: 397 SLYNISHVWLS 407
           +      V  S
Sbjct: 408 ARLADRVVVTS 418


>gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 508

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 171/483 (35%), Gaps = 52/483 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD-GHDFILHAVQKG 64
               LL       I +     ++GI  DSR + P   F  +K  + +  +  ++HA++ G
Sbjct: 9   NLQQLLS----SWIKLSYSYTISGIQSDSRLVKPGYLFCVLKKKNINETNKHMIHAIKNG 64

Query: 65  AGLVVVNTDMVASIGSL-----SIPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVG 118
           A +++ +T      G+L      +P+     +   L   L       +  T+I ITG+ G
Sbjct: 65  AKIILYDTKQKFKNGTLKKIINHVPIIYFFKLSKNLPQILKKYYHFENNFTLIGITGTNG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFEL------- 167
           K+TT  +++   + +      +G+  + I   L           ++   ++ +       
Sbjct: 125 KSTTTHIVSQWANLLNVKIGIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKT 184

Query: 168 ---GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
               +S  G ++     +   IA++T I P HL     ++   +AK   F       T+ 
Sbjct: 185 FAIEISSHGIVQHRIEQLPFKIAILTNITPEHLDYHRTMDNYINAKKAFFFKYNIN-TLI 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGK 279
           +N DD   +    K +   + TI +  ++ N+          K  Q    + +       
Sbjct: 244 INADDLIAKTWIKKLNHKNVITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSSWG 303

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +    IG+    N+L+ L  +  L   +   +K         GR +           
Sbjct: 304 HGILNSTLIGHFNVINILLALATLLELNYPITDLVKVCKYIKTISGRMEHIHIV--NKPK 361

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID  Y  N   +K  +S L +I    + +   + G   +  +  + +   +AE +S  
Sbjct: 362 VIID--YAHNTNGLKNLLSTLKEI--FNKKKIWCIFGCGGDRDKTKRPYMGSIAEKMS-- 415

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V L+  +         +  +         +      +    F  ++    D++VV 
Sbjct: 416 --DQVILTNDNPRNEHPLKIIKNILSGCKFKNKIRIIPNREHAIKFAVNNADKEDIIVVA 473

Query: 450 -KS 451
            K 
Sbjct: 474 GKG 476


>gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 131/372 (35%), Gaps = 35/372 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI+G+ GKTTT  M+   L           SYN  I V   + ++  +   G  E 
Sbjct: 102 KNVIAISGTHGKTTTTSMIGYILKKA--------SYNPTILVGAFVKQLGGNFVIGSKEY 153

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G +  N 
Sbjct: 154 LVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFLVANC 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVH 285
           DD   + + +K H      +      + AD               +V+     +   +  
Sbjct: 214 DDKNVKDVISKLHT----QVVCISTKEKADIFAGNISCNDGYYEFDVKNNNDEILAHIKL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G+H   N L    + S L  +  T  +ALS F    G  +R           L D+ 
Sbjct: 270 NIPGFHNVYNSLAAFAVASKLGVESITIEQALSEF---CGASRRLEKVGEFDGIYLYDD- 325

Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  +KA ++ L +           PH   R  ++L +  E  + +         V 
Sbjct: 326 YAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLKWADK-----VIVT 380

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y        G     L   L    I   Y    + +  ++      GD++    +   
Sbjct: 381 DVYAAREKNTFGITSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAGDI 440

Query: 456 GFYRLINLLLEE 467
              + ++++L++
Sbjct: 441 N--KCLDIILKK 450


>gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 453

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 145/400 (36%), Gaps = 42/400 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +       IPV    ++L  L +L            +AI G+ GKTTT  +
Sbjct: 72  SAVTEDNPEIQLARQHGIPVIPRAEMLTELMRLRKG---------VAIAGTHGKTTTTSL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 +          ++  + +   L     +   G  +  ++   E      L+ P 
Sbjct: 123 TATVFDTAG--------FDPTVVIGGVLNAYGANARLGQGQYLIAEADESDGSFLLLLPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   HL  +   EEI  A       +   G   +  DD   + +  + +    +
Sbjct: 175 INVVTNIDLDHLDYYRSFEEIEHAFVTFMNNVPFYGMNVVCGDDPGVQRVLPRVN----R 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G   +        + C   +  +V   G+ + EV+    G H   N L  +G+  
Sbjct: 231 QVITYGFESSNHIWAEIIE-CGIINRFKVIAHGECLGEVILTQPGKHNILNALAAIGVAL 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +       I+ L+ F   +G G+R+     +   T+ID+ Y  +P  + A +    ++ 
Sbjct: 290 EVGISPKCCIEGLANF---KGVGRRFEYKGEKNGITVIDD-YGHHPIEVAATLETARKVF 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALK 415
           P    RRI V          +Q+   +  +VLS         +Y      + G +   L 
Sbjct: 346 PD---RRIVVAFQPHRF-SRTQALFGEFCQVLSTVDKLLLTEIYPALEKPIPGINSQNLA 401

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             + +   I V Y   +D +F  +   L  GDV++   + 
Sbjct: 402 QGIQQISKIDVTYYPDIDAVFHALPHVLCAGDVLITLGAG 441


>gi|16273065|ref|NP_439297.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae Rd
           KW20]
 gi|260580223|ref|ZP_05848053.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
 gi|1171071|sp|P45066|MURC_HAEIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356937|pdb|1GQQ|B Chain B, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356938|pdb|1GQY|A Chain A, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|33356939|pdb|1GQY|B Chain B, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae
           Rd KW20]
 gi|260093507|gb|EEW77440.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
          Length = 475

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 147/422 (34%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|145630239|ref|ZP_01786021.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145641273|ref|ZP_01796853.1| D-alanine--D-alanine ligase [Haemophilus influenzae R3021]
 gi|144984520|gb|EDJ91943.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145274110|gb|EDK13976.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.4-21]
          Length = 475

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 147/422 (34%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIKAAREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis C231]
 gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis I19]
          Length = 503

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 153/478 (32%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L     G   G      +  IS+DS+ +     F A+ G    G  +         
Sbjct: 10  TLGFLAALTGGELHG-DKDIVIEEISLDSQELPQGGLFAALPGTRSHGAKYAQETQAAAI 68

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
                  +++   G    P   V++V G L  ++     R      II ITG+ GKTTT 
Sbjct: 69  LTDAAGAEILRESGDTR-PRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKTTTS 127

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFEL 167
            ML   L +  K+   IG+    I       ++                   V   + E+
Sbjct: 128 YMLEAGLINAGKSVGLIGTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVVMEV 187

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFL 225
               L   R          A  T ++  HL     +EE   AKA +F+      T    +
Sbjct: 188 SSHALSLGRVSA--THFAAAGFTNLSQDHLDFHPTMEEYFEAKALLFDPASSVHTKKTVI 245

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
             D+ +   +  +S A  +    S      ADF +       +      V  +   + V 
Sbjct: 246 CIDEPWGLQMLERSGAEALS--VSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVD 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N  + +G+ S +  D+D  +   +        G+  R    Q F  ++D 
Sbjct: 304 LPIPGAFNVANAALAIGLASSVGIDLDRFV---AGLTAVSVPGRMERVNRGQDFLAIVD- 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVL 396
            Y   PA++ A +  + + +    GR   V+G   +        MG+ S +   DL  V 
Sbjct: 360 -YAHKPAAVAAVLEAVRRQAA---GRVAIVVGAGGDRDRSKRAIMGKES-ALRADLVIVT 414

Query: 397 SLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                S    L    +L        +  +              +     D V++  K 
Sbjct: 415 DDNPRSEDPALIREAILTGAQKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGKG 472


>gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis
           MA-4680]
 gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           avermitilis MA-4680]
          Length = 464

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 165/439 (37%), Gaps = 44/439 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVF 86
           D++     EA  A+    + GH      +   A  VVV      +   +A    L IPV 
Sbjct: 40  DAKESETAEALRALGATVHIGH--AAEHLADDATCVVVSSAIRADNPELARAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L         ARL      IA+ G+ GKTTT  ML ++LS++    A   +    
Sbjct: 98  HRSDAL---------ARLMDGLRPIAVAGTHGKTTTTSMLAVSLSTLG--LAPSYAIGGD 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +  P + A +  + D  + E   S         H   P +A++  +   H +N++ ++EI
Sbjct: 147 LDAPGSNA-LHGEGDIFVAEADESD-----RSFHKYAPDVAIVLNVELDHHANYASMDEI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            ++     + + + GT+ +  D      L  +  A G++ + ++G+S +AD  +      
Sbjct: 201 YASFETFVDRITEGGTLVIAADHEGARELTRRVTASGVR-VVTYGESADADVCVLSVTAQ 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +S +EV L G  +       G H A N +  L     L         AL+ +   +  
Sbjct: 260 GLKSEVEVLLDGTELTFTVSVPGRHYAHNAVAALAAGVALGIPAADLASALAAYTGVK-- 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R +    +    +I +SY  +P  M A +  +   +      RI V+     +   +Q
Sbjct: 318 -RRLQLKGEEAGVQVI-DSYAHHPTEMTADLEAMRAAAGDA---RILVVFQ-PHLFSRTQ 371

Query: 387 SFHIDLAEVLSLYNISHV---------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLF 436
               ++ + L+L + S V          + G     + +A       V        +   
Sbjct: 372 ELGKEMGQALALADASVVLDIYPAREDPIPGITSELIIEAARAAGADVTPVHDKAEVPSV 431

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           I      GD+V+   +   
Sbjct: 432 IAGMARPGDLVLTMGAGDV 450


>gi|329124133|ref|ZP_08252680.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
 gi|327467558|gb|EGF13056.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
          Length = 475

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 147/422 (34%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELIPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPDNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGACRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVSVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     +          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKIDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|291615173|ref|YP_003525330.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585285|gb|ADE12943.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
          Length = 486

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 153/447 (34%), Gaps = 69/447 (15%)

Query: 52  DGHDFILHAVQKGAG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
            GHD   + +   A      V  +   + +     IP+     +L  L +L         
Sbjct: 55  HGHD-ANNLLDADAVVVSTAVKADNPEMMAAREQHIPIVPRAVMLAELMRLRQG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++T  L+         G Y+    +   L     +   G  E 
Sbjct: 108 ---IAVAGTHGKTTTTSLVTSVLAK--------GGYDPTFVIGGRLNSSGANARLGTGEF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       + P +AV+T I   H+  +     ++  A  +  E L   G   L 
Sbjct: 157 IVAEADESDASFLYLTPILAVVTNIDADHMETYGHDFGKLKQAFVDFVERLPFYGRAILC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--------LQG 278
            DD     +  +      K I ++G S++   +    +    +     Q         +G
Sbjct: 217 ADDENVRDILPRIS----KPITTYGLSEDVQIRAVDVRHEGGRMRFTAQCRHDEKCLFEG 272

Query: 279 K--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------ 330
           K   +EV  +  G H   N L  + +   +       + AL+ F     R +RY      
Sbjct: 273 KPIDLEVTLNLAGMHNVLNALAAIAVGLEVGVAPSAIVAALAEFEGVGRRMQRYGEIPLP 332

Query: 331 ----------RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                       A   G FTLID+ Y  +P  MKA    L+ +     G+R  +L     
Sbjct: 333 NPLPQAGEGANAAAAGGSFTLIDD-YGHHPVEMKA---TLAAVRGAFPGKR-LLLAFQPH 387

Query: 381 MGELSQSFHIDLAEVL---SLYNISHVWLSGFHVLALKDA--------LPRSIHVHYSET 429
               ++    D  +VL       ++ V+ +G   +   D         +       + E 
Sbjct: 388 RFTRTRDLFEDFVKVLGGVDALALAEVYAAGEQPIVAADGRALMHALRVAGQNEAVFVEN 447

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +  +   I     DGDVV+   + S G
Sbjct: 448 IADMPQTIMQMAQDGDVVLTMGAGSIG 474


>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 641

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/537 (16%), Positives = 159/537 (29%), Gaps = 108/537 (20%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           ++A  G +I +  Q  VN +SIDSR +     F A+ G   DGH +   A+ +GA  VV+
Sbjct: 27  IEATNGVAIRLAMQ--VNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVL 84

Query: 71  NTDMVASIGSLSIP-----VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
                  I +         V  V      L  L             +  ITG+ GKTTT 
Sbjct: 85  ENLPPELIEADQTDLLSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTT 144

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFEL 167
            M+T  L+ +      IG+    +     L                A++  +    +   
Sbjct: 145 AMITWLLNKVDYPAGSIGTLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVCME 204

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S       +  L    +   T     HL     +E  A AKA +F GL K  T  LN 
Sbjct: 205 VSSQAAVQHRVDALAWQTM-TFTNFTVDHLDYHHTVENYALAKASLFRGLSKAATAVLNA 263

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSK----NADFQ------------------------ 259
           DD     L   + A   + ++ + +        DF                         
Sbjct: 264 DDPLAYYLAQLTQA---QKVFYYIQDDALGSRGDFSQYIKDRSKILGKAWEKFMLEVQEK 320

Query: 260 ---------------------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                                 R  K  +     E+    ++  +    +G     N L 
Sbjct: 321 IPPESSREILCKAAAAGRVVAARNVKPTNSGWQAEISRGEETCTLTIPLLGRFNLNNALA 380

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----------------- 341
            +    ++  ++D    A ++       G R      QG                     
Sbjct: 381 AIATAMVICPNIDLRTWAAAMATMPAVPG-RLEIIDGQGQACPTCRPSNGKLNLEDTTTP 439

Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLS 397
             +   +   P +M+A ++   ++  H    +    +           +     + E L+
Sbjct: 440 YRVVIDFAHTPGAMEALLT---EVRRHCCANKKLWVLANSCGNRDRGKRPLIAAVCERLA 496

Query: 398 LYNISHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  +   G       +  L+    +  ++           ++ S L  GD  VV
Sbjct: 497 DRIVLTLEEVGQENPAEILAELQAGFRQPENIPVVPLRQEAIRYVISRLEPGDYFVV 553


>gi|220927180|ref|YP_002502482.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium nodulans
           ORS 2060]
 gi|254766011|sp|B8IN63|MURC_METNO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219951787|gb|ACL62179.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium nodulans ORS
           2060]
          Length = 471

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 150/435 (34%), Gaps = 60/435 (13%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALN 96
           F   +G +              A LVVV+T +      L       +PV    ++L  L 
Sbjct: 56  FVGHRGENL-----------ADAELVVVSTAIRRDNPELALARERRLPVVRRAEMLAELM 104

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +             +A+ G+ GKTTT  ++   L +       I      I    T ARM
Sbjct: 105 RFKSC---------VAVAGTHGKTTTTSLVATLLDAGGLDPTVIN--GGIINAYGTNARM 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E   S    ++     +   IA++T I P HL +F   + I  A     + 
Sbjct: 154 GEG-DWMVVEADESDGTFLK-----LPADIAIVTNIDPEHLDHFGSFDAIKDAFRAFIDN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + L  +      + I ++G++  AD +L        QS   V +
Sbjct: 208 IPFYGFAVMCIDHPTVQDLVGRIE---DRRIVTYGENPQADVRLIDVDLKGGQSRFRVMI 264

Query: 277 QGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +         ++V    G H A N    L +   L    +   +AL+ F   + R  R
Sbjct: 265 RDRRPGFRLEMEDLVLPMPGKHNALNATAALAVAHELGVSPEAIRRALAGFGGVKRRFTR 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQS 387
                 +     I + Y  +P  +KA   VL       EGR +AV+       +  L   
Sbjct: 325 ----TGEWNGAQIFDDYGHHPVEIKA---VLKAARASTEGRVVAVVQPHRYTRLASLFDD 377

Query: 388 F-----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSS 440
           F       D   V  +Y      + GF   AL   L    H +    E  + L   I   
Sbjct: 378 FCTCFNDADTVIVAPVYAAGEAPIEGFDRDALVAGLKSRGHRNAVALERSEDLAAMISGL 437

Query: 441 LVDGDVVVVKSSNSC 455
              GD VV   + + 
Sbjct: 438 AGPGDYVVCLGAGNI 452


>gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
 gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
          Length = 481

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/479 (20%), Positives = 174/479 (36%), Gaps = 72/479 (15%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + IS DSR       FFA KG  +   ++++ A+ +G G  V   D       + I
Sbjct: 32  NVTFDSISYDSRKAKENCLFFA-KGAAFK-EEYLVSAISQGLGWYVAEKDY-----QVGI 84

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+++  A++   +      + K  I+A TG+ GKTT        LS   +T A + 
Sbjct: 85  PVIVVNNIKKAMSLIAMVFYGNPQKKLKILAFTGTKGKTTAAYFAYHILSQRYQT-ALLS 143

Query: 142 SYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               + L  M            + E+        R   + +  
Sbjct: 144 TMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVKNNRTHLVMEVSSQAYLVHR--VYGLTF 201

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I P H+        E+    K  + E    +  + +N D   F LLK +    
Sbjct: 202 DVGVFLNITPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVVNSDMDHFNLLKEEVEQK 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLG 301
                  +G    +D Q++  K             GK + +     IG+   +N +    
Sbjct: 259 EHD---FYG--SQSDNQIKNSKA------FRFSATGKLAGDYDIQLIGHFNQENAVAAGL 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L A ++   K ++        G+        G   +ID  Y  N  S+   ISV+ 
Sbjct: 308 ACLRLGASLEDIQKGIA---ETRVPGRMEVLTQKNGAKVIID--YAHNGDSLTKLISVVE 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
           +   H  G    VLG     G   +S   D   +L+ +    V+L+          A+ D
Sbjct: 363 E---HHTGNIALVLGS---TGNKGESRRKDFGLLLNKHPEIQVFLTTDDPNYEDPRAIAD 416

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV--KSSNSCGFYRLINLLLEEFP 469
            +   I  H  +T+      I++++       D V++  K ++    Y++IN + EE+P
Sbjct: 417 EISSYIE-HPVKTIIDREEAIKTAMSITSQPLDAVILAGKGADC---YQIINGVKEEYP 471


>gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
 gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
          Length = 466

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 157/427 (36%), Gaps = 43/427 (10%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           A+    + GH      + + A  VVV++ + A    L      +IPV    D L +L   
Sbjct: 52  ALGATVHIGH--AAPHLAEDASCVVVSSAIRADNPELLRANELAIPVVHRSDALASL--- 106

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                  +    IA+ G+ GKTTT  ML +ALSS+  + A   +    +  P T A    
Sbjct: 107 ------MNGLRAIAVAGTHGKTTTTSMLAVALSSL--SLAPSYAIGGDLEGPGTNATHGE 158

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + E   S     ++      P +A++  +   H +N++ ++EI  +       + 
Sbjct: 159 G-DIFVAEADESDRSFQKY-----DPEVAIVLNVELDHHANYASMDEIYDSFETFVGKVV 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ ++ D      L  +   L    + ++G +++AD ++ K       S + V L G
Sbjct: 213 PGGTLVISADQPGAVELTRRVRDLADLKVVTYGSAEDADVRVHKVTPRGLTSEVTVLLNG 272

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K +       G H A N +  L     L         AL  +   +   +R +       
Sbjct: 273 KFLTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVK---RRLQLKGEAAG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +SY  +P  M A +  +   +      RI V+     +   +Q    ++ + L+L
Sbjct: 330 VQVI-DSYAHHPTEMTADLEAMRGAAADA---RILVVFQ-PHLFSRTQELGTEMGQALAL 384

Query: 399 YNISHV---------WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + S V          + G     + DA       V        +   I      GD+V+
Sbjct: 385 ADASVVLDIYPAREDPIPGITSALIIDAAKTAGAEVTAVHDQADVPAAIAGMAKPGDLVL 444

Query: 449 VKSSNSC 455
              +   
Sbjct: 445 TMGAGDV 451


>gi|311031282|ref|ZP_07709372.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. m3-13]
          Length = 436

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 148/395 (37%), Gaps = 47/395 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   L+IPV      LG   +         K T IA+TG+ GKT+T  +
Sbjct: 68  NAFPDTHEEIEAAKELNIPVIRYPQFLGQFME---------KYTSIAVTGAHGKTSTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  +   K T   IG             R   D ++ +FE        + +      P 
Sbjct: 119 LSHVIQGAKPTSYLIGDG---------TGRGVEDSEYFVFEACEYKRHFLSY-----YPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T I   H   F  I+++ SA  E+   ++K   I    DD + + ++AK       
Sbjct: 165 YTIMTNIDFDHPDYFGSIDDVFSAFQEMAMQVKKG--IIACGDDEYLQKIQAKV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +  +G  +  DFQ R  ++ +E +  +V ++         +G G H   N L  + +  
Sbjct: 217 PVIYYGFGEENDFQARHVEKSTEGTTFDVYVRNNHYATFKINGYGDHNIMNSLAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                VD     L  F   +    R       G   LID+ Y  +P  ++A I   +Q  
Sbjct: 277 YEEIPVDVIQSQLLTFEGVK----RRFSEKVIGSQVLIDD-YAHHPTEIRATIDAANQKY 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
           P  +   IAV          +Q+F  + AE LS     HV+L      A ++    +I+ 
Sbjct: 332 PDRD--VIAVF--QPHTFTRTQTFLNEFAESLS--GADHVYLCDIFGSARENQGKLTIND 385

Query: 424 -VHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSC 455
            +   +  + L     + L   +  V++   +   
Sbjct: 386 LLDKIDRAEILSEEGTALLAKHENSVIIFMGAGDV 420


>gi|253828104|ref|ZP_04870989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511510|gb|EES90169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 478

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 30/347 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
               TIIA+TGS GKT+ K  L   L    K YA   S N   G+   + + +    D  
Sbjct: 152 MPNLTIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIY 211

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G   +G+I+ +  L++P IAVI  I PAH+  F  ++ I  AK EI +        
Sbjct: 212 IVEAGARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQ--SPNLQK 269

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             NY D+                +  F ++      +         +   +   G+ M+ 
Sbjct: 270 VYNYKDN-------TPPQNFYGNMIWFPQN------VSSVDTSLNGTSFSLTYNGEKMDF 316

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + +        +  IK +        R  +           ++D
Sbjct: 317 ETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLSKIMV----NDKVILD 372

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +SYN N   M  AI    ++S   +GR++ V   + E    S+  +I LAE +       
Sbjct: 373 DSYNGNLDGMLEAI----RLSSLYDGRKVIVTPGLVES---SKEANIALAEAIDRV-FDI 424

Query: 404 VWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++G  +   LK+ + +   +   +    +   ++S+ + GD+++ 
Sbjct: 425 AIITGELNSKLLKEHIHKPQKII-LKDKKNMENILKSATMAGDLILF 470


>gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 130/372 (34%), Gaps = 35/372 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI+G+ GKTTT  M+   L            YN  I V   + ++  +   G  E 
Sbjct: 102 KNVIAISGTHGKTTTTSMIGYILKKA--------CYNPTILVGAFVKQLGGNFVIGSKEY 153

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G +  N 
Sbjct: 154 LVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFLVANC 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVH 285
           DD   + + +K H      +      + AD               +V+     +   +  
Sbjct: 214 DDKNVKDVISKLHT----QVVCISTKEKADIFAGNISCNDGYYEFDVKNNNDEILAHIKL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G+H   N L    + S L  +  T   ALS F    G  +R           L D+ 
Sbjct: 270 NIPGFHNVYNALAAFAVTSKLGVESLTIEHALSEF---CGASRRLEKVGEFDGIYLFDD- 325

Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  +KA ++ L +           PH   R  ++L +  E  +L+         V 
Sbjct: 326 YAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLKLADK-----VIVT 380

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y        G     L   L    I   Y    + +  ++      GD++    +   
Sbjct: 381 DVYAAREKNTFGITSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAGDI 440

Query: 456 GFYRLINLLLEE 467
              + ++++L++
Sbjct: 441 N--KCLDIILKK 450


>gi|297191289|ref|ZP_06908687.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718424|gb|EDY62332.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 464

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/419 (20%), Positives = 152/419 (36%), Gaps = 43/419 (10%)

Query: 53  GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV      +   +     LS+PV    D L +L          +
Sbjct: 60  GH--AAEHLADDATSVVVSSAIRADNPELVRAAELSVPVVHRSDALASL---------MT 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML +AL+ +    +        +  P T AR   D D  + E
Sbjct: 109 GLRSIAVAGTHGKTTTTSMLAVALTELGLDPSYA--IGGDLDGPGTNAR-HGDGDIFVAE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S     ++      P +A++  +   H +N++ ++EI  +       +   GT+ ++
Sbjct: 166 ADESDRSFQKY-----DPEVAIVLNVELDHHANYASMDEIYESFETFAGKIVPGGTLVIS 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D +    L AK        I ++G+S+ AD ++ K       S + V L G+ +     
Sbjct: 221 ADQAGAVELTAKVRDRSSVKIVTYGESEAADVRVHKITPRGLTSEVTVLLDGRLLTFTVS 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L     L         A+  +   +   +R +         +I +SY
Sbjct: 281 VPGRHYALNAVAALAAGVALGIPAHNLASAIGAYTGVK---RRLQLKGEAAGVQVI-DSY 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +   +    G R+ V+     +   +Q    ++ + L+L + S V  
Sbjct: 337 AHHPTEMTADLEAMRGAAA---GSRLLVVFQ-PHLFSRTQELGTEMGQALALADASVVLD 392

Query: 405 -------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   + G     + DA       V        +   +      GD+V+   +   
Sbjct: 393 IYPAREDPIPGITSGLITDAARAAGADVTAVSDKAAVPEVVAGMAKPGDLVLTMGAGDV 451


>gi|260550189|ref|ZP_05824402.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
 gi|260406717|gb|EEX00197.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
          Length = 482

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 162/426 (38%), Gaps = 53/426 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSK 107
           +I H  +  K A ++VV+T +      +        P+    ++LG L +          
Sbjct: 71  YIGHEAENIKNANVLVVSTAIDPENPEVKAAIEQRTPIVRRAEMLGELMRYR-------- 122

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + 
Sbjct: 123 -HGIAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P  A++T I   H+  +    +++     +    L   G   
Sbjct: 177 EADESDASFL-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAV 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD+    +  +      + + ++G +++ D +    +Q   +S   V  +G+  + +
Sbjct: 232 VCGDDANIREILPRV----GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRL 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLI 342
             +  G H   N L  +G+ +      +   +AL  F     R +      L +G   L+
Sbjct: 288 TINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLV 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---- 398
           D+ Y  +P  ++A I    Q   H + R + +          ++    D  EVLS     
Sbjct: 348 DD-YGHHPKEVEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQL 402

Query: 399 -----YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVK 450
                Y      + G     L  ++     V     + ++G L   +Q+ L   D+++ +
Sbjct: 403 LLLEVYPAGEKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQNVLQPNDLLLTQ 462

Query: 451 SSNSCG 456
            + + G
Sbjct: 463 GAGNVG 468


>gi|291522020|emb|CBK80313.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus catus GD/7]
          Length = 458

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 136/377 (36%), Gaps = 39/377 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           + +    IA++G+ GKTTT  ML+  L +           +  I V   L  +  ++  G
Sbjct: 107 MTNYTNAIAVSGTHGKTTTTSMLSHILLAAD--------TDPTISVGGILKAIHGNIRVG 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  ++   E         P + +I  I   HL  F  I +I  +  +  E L+    +
Sbjct: 159 HSDNFITEACEYTNSFLKFNPSLEIILNIEEDHLDFFKDINDIRHSFRKFAEKLDADDIL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSME 282
            +N + S    +           I ++G     D+           +   ++   GK ++
Sbjct: 219 VINGEISHVSEITDGLPC----HIITYGLKPECDYAAENITFDEFAKGSFDLIAYGKKID 274

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G H   N L  +     L   +D   K L  F   EG  +R+         T+
Sbjct: 275 HIQLNVAGIHNVSNALAAIASARELHIPMDIIKKGLMAF---EGTDRRFEYKGQFNGVTV 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ Y  +P  +KA ++   +       +   V          +++F  + A+ LSL   
Sbjct: 332 IDD-YAHHPTEIKATLTAAQKYP---HRQIWCVF--QPHTYTRTKAFFHEFADALSL--A 383

Query: 402 SHVWLSGFHVLALKD------------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L+  +     D             L +    +Y  + + +  F++   ++GD+++ 
Sbjct: 384 DKIVLADIYAARETDPGDIHSRDIQKLLLEKGKEAYYFPSFEEIEKFLREKCINGDLLIT 443

Query: 450 KSSNSCGFYRLINLLLE 466
             +       +   L++
Sbjct: 444 MGAGDVVL--VGEALIK 458


>gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 466

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 156/427 (36%), Gaps = 43/427 (10%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKL 98
           A+    + GH      +   A  VVV++ + A        G L++PV    D L +L   
Sbjct: 52  ALGATVHIGH--AAGHLADDASCVVVSSAIRADNPELLRAGELAVPVVHRSDALASL--- 106

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                  +    IA+ G+ GKTTT  ML +ALSS+    A   +    +  P T A    
Sbjct: 107 ------MNGLRAIAVAGTHGKTTTTSMLAVALSSLG--LAPSYAIGGDLEGPGTNATHGE 158

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + E   S     ++      P +A++  +   H +N++ ++EI  +       + 
Sbjct: 159 G-DIFVAEADESDRSFQKY-----DPEVAIVLNVELDHHANYASMDEIYDSFETFVGKVV 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ ++ D      L  +   L    + ++G +++AD ++ K       S + V L G
Sbjct: 213 PGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRGLTSEVTVLLNG 272

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K +       G H A N +  L     L         AL  +   +   +R +       
Sbjct: 273 KFLTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVK---RRLQLKGEAAG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +SY  +P  M A +  +   +      RI V+     +   +Q    ++ + L+L
Sbjct: 330 VQVI-DSYAHHPTEMTADLEAMRGAAADA---RILVVFQ-PHLFSRTQELGTEMGQALAL 384

Query: 399 YNISHV---------WLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + S V          + G     + DA       V        +   +      GD+V+
Sbjct: 385 ADASVVLDIYPAREDPIPGITSALIIDAAKEAGAEVTAVHDQADVPAAVAGMAKSGDLVL 444

Query: 449 VKSSNSC 455
              +   
Sbjct: 445 TMGAGDV 451


>gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 164/492 (33%), Gaps = 90/492 (18%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK---GPHY----DG--HDFI 57
             +LL  I    +       + G++ + + +     F  +      H     +G  H+ +
Sbjct: 5   LKELLHNI----VNADFDIEIKGVTCNPKRVKEGYLFVCVSERSKEHVTCLPNGCVHNCV 60

Query: 58  LHAVQKGAG-------------LVVVNTDMVASIGSLSIPV-------------FGVDDV 91
              V +GA               ++VN           IPV                 D 
Sbjct: 61  -DVVIQGAKKDVIPVLRHWDPENLIVNKHTRQLYNENWIPVSATRMTSTPSFAVLYHSDP 119

Query: 92  LGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            G  +++ +   + +    + A+TG+ GKT+  E           +   +G+  N+    
Sbjct: 120 QGIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQDNVASIGTLGTCVNNNRKD 179

Query: 151 LTLARMPVD-------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
            +L     D             V+    E     + + R   H +R + A  T  +  HL
Sbjct: 180 NSLTTPSADDLYSTLRDINNKNVEHLALEASSHGIDQYRI--HGLRLNAAAFTNFSQDHL 237

Query: 198 SNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                I+E   AK  +F+  L K  T  LN D   +  L   +   G K + ++GK KN+
Sbjct: 238 DYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNK-VITYGK-KNS 295

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D  L K    +   ++ +Q+  +         G   A N+L  +GIV     D       
Sbjct: 296 DITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQR--MC 353

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +       GR ++          T     Y   P+++K     L  +  H   + + V G
Sbjct: 354 IDKLASPSGRMEKV--------NTFAFVDYAHTPSALK---QALLSLKWHFNKKIVLVFG 402

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNI-------SH--------VWLSGFHVLALKD---AL 418
                 +  ++    +A++L+   I                 + L     L + D   A+
Sbjct: 403 CGGNRDQTKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAI 462

Query: 419 PRSIHVHYSETM 430
            + I++ + E M
Sbjct: 463 EKGINIAHDENM 474


>gi|28572689|ref|NP_789469.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
 gi|28410821|emb|CAD67207.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
          Length = 475

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 148/390 (37%), Gaps = 35/390 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++      +     +I+I GS GKT+T  M+  AL  +            +      L 
Sbjct: 101 LHRSLALKWITRGKRLISIAGSHGKTSTTAMIATALHVLGNKCGVANGSYMNFFSANALL 160

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D  + E   S    + + T      I+V+  I+  H+  +     +  +  +  
Sbjct: 161 GLN---DLFVIEADESDGSFLFYDT-----DISVVNNISMDHVDYYGSQSALEGSFFDF- 211

Query: 215 EGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             L  +    ++ DD+       +LL++       K + +FGK+++AD  L +   C   
Sbjct: 212 -SLRSSDAAVISLDDAACIKIASKLLQSSGSRGPSKRVITFGKNRSADVCLYEM-GCMNP 269

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +   V  +G+       G+ G H A N    L ++  L   +  +++A+  F     R +
Sbjct: 270 ARFTVSYEGRFYNAGFKGLFGEHHAVNTCAALSVLLCLGYGISESLEAILSFSGTRRRLE 329

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +  +  +    + D+ Y  +P  ++ A++ +  +      R IA+      +   + + 
Sbjct: 330 LHFDSGGKDGIKIFDD-YAHHPREIRTALTAIRSVQ---HTRLIALF--QPHLYSRTAAL 383

Query: 389 HIDLAEVLS----------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           H + A VL           +Y      + G     + DA     +V   E  D    F +
Sbjct: 384 HREFASVLENCADFTIILPVYAARESPIPGVDAKIIFDAYRDKRNVVMLEGFDHTLSFFR 443

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             L DGD+V+         Y++I  ++E+ 
Sbjct: 444 QFLRDGDLVITLGCGDV--YKIIPSIVEQL 471


>gi|224419171|ref|ZP_03657177.1| D-alanyl-D-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313142677|ref|ZP_07804870.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313131708|gb|EFR49325.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 485

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 30/347 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
               TIIA+TGS GKT+ K  L   L    K YA   S N   G+   + + +    D  
Sbjct: 159 MPNLTIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIY 218

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G   +G+I+ +  L++P IAVI  I PAH+  F  ++ I  AK EI +        
Sbjct: 219 IVEAGARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQ--SPNLQK 276

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             NY D+                +  F ++      +         +   +   G+ M+ 
Sbjct: 277 VYNYKDN-------TPPQNFYGNMIWFPQN------VSSVDTSLNGTSFSLTYNGEKMDF 323

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + +        +  IK +        R  +           ++D
Sbjct: 324 ETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLSKIMV----NDKVILD 379

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +SYN N   M  AI    ++S   +GR++ V   + E    S+  +I LAE +       
Sbjct: 380 DSYNGNLDGMLEAI----RLSSLYDGRKVIVTPGLVES---SKEANIALAEAIDRV-FDI 431

Query: 404 VWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++G  +   LK+ + +   +   +    +   ++S+ + GD+++ 
Sbjct: 432 AIITGELNSKLLKEHIHKPQKII-LKDKKNMENILKSATMAGDLILF 477


>gi|332872846|ref|ZP_08440811.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
 gi|332739007|gb|EGJ69869.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
          Length = 482

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 159/417 (38%), Gaps = 51/417 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +       +P+    ++LG L +             IA+ G+
Sbjct: 80  KNANVLVVSTAIDPENPEVKAAIEQRVPIVRRAEMLGELMRYR---------HGIAVAGA 130

Query: 117 VGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + E   S    
Sbjct: 131 HGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P  A++T I   H+  +    +++     +    L   G   +  DD+   
Sbjct: 186 L-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            +  +      + + ++G +++ D +    +Q   +S   V  +G+  + +  +  G H 
Sbjct: 241 EILPRV----GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPA 351
             N L  +G+ +      +   +AL  F     R +      L +G   L+D+ Y  +P 
Sbjct: 297 VLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDD-YGHHPK 355

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
            ++A I    Q   H + R + +          ++    D  EVLS          Y   
Sbjct: 356 EVEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAG 411

Query: 403 HVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
              + G     L  ++     V     + ++G L   +QS L   D+++ + + + G
Sbjct: 412 EKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQSVLQPNDLLLTQGAGNVG 468


>gi|311741530|ref|ZP_07715354.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303700|gb|EFQ79779.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 487

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 143/428 (33%), Gaps = 45/428 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    D+L AL +             + + G+ GKT+T  M
Sbjct: 81  AAIPQDNPELVAAKDNDIPVIRRSDLLAALMEGHKQ---------VLLAGTHGKTSTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              A+             +    +   L R   +   G  E  ++   E         P 
Sbjct: 132 TVSAMQHAG--------LDPSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYSPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+TTI P HL  F   E       +  + +  +TG + +  +D        ++   GI
Sbjct: 184 VAVLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAGERALERGI 243

Query: 245 KTIYSFGKSKNA-------DFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMA 293
             + ++G  + +         +L + +  +E     V L      +++       G+HM 
Sbjct: 244 -NVVAYGSPEKSFTSTVPLAAELVREETTAEGMDTTVNLDLPSVSETVRYELQIPGHHMV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  L    +         + L+ F     R +       QG    + + Y  +P  +
Sbjct: 303 LNSMGALIAGVLSGGAPAAIAEGLADFGGVRRRFEYRGSVDKQGKPVRVFDDYAHHPTEV 362

Query: 354 KAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
            A +        +    GR IA       +   +  F  + A+         VL +Y   
Sbjct: 363 AAVLRAARAKVEAEGHGGRVIACF--QPHLYSRTMEFDAEFAQALSLADAAVVLDIYGAR 420

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              + G     + D +P  + V +          + S +  GDVV+   + S     +  
Sbjct: 421 EQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSVTM--VAA 478

Query: 463 LLLEEFPA 470
            +L+E  A
Sbjct: 479 EILDELRA 486


>gi|254393145|ref|ZP_05008303.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444045|ref|ZP_08218779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706790|gb|EDY52602.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 470

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 154/419 (36%), Gaps = 43/419 (10%)

Query: 53  GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV      +   +     LS+PV    D L +L          +
Sbjct: 60  GH--AAGHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRSDALASL---------MT 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML +AL ++          +    +   LA    +   G  +
Sbjct: 109 GLRAIAVAGTHGKTTTTSMLAVALGALG--------LDPSYAIGGDLAGPGSNAHHGDGD 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E         P +A++  +   H +N++ ++EI  +       +   GT+ + 
Sbjct: 161 IFVAEADESDRSFQKYAPEVAIVLNVELDHHANYASMDEIYESFEIFAGRIVPGGTLVIA 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      L ++        I ++G+S+ AD ++++       S + V L G+ +     
Sbjct: 221 ADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVS 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L   + L   VD    AL  +    G G+R +     G   +I +SY
Sbjct: 281 VPGRHYAHNAVAALAAGAALGIPVDELATALGAYT---GVGRRLQLKGEAGGVQVI-DSY 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +   +   + R + V      +   +Q    ++ + L+L + S V  
Sbjct: 337 AHHPTEMTADLEAMRAAAA--DSRLLVVF--QPHLFSRTQELGTEMGQALALADASLVLD 392

Query: 405 -------WLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   + G      +  A      V  +  M  +   +      GD+V+   +   
Sbjct: 393 IYPAREDPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPGDLVLTMGAGDV 451


>gi|34556863|ref|NP_906678.1| D-alanyl-D-alanine-adding enzyme [Wolinella succinogenes DSM 1740]
 gi|34482578|emb|CAE09578.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Wolinella succinogenes]
          Length = 481

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 144/371 (38%), Gaps = 50/371 (13%)

Query: 92  LGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              LN+ A AA+ +       TIIAITGS GKT+ K  L   L+   K +A   S N   
Sbjct: 140 RVLLNRYATAAKDKLASMPNLTIIAITGSYGKTSLKNFLAQILNDNFKVHASPRSVNTFA 199

Query: 148 GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           G+   +   +    D  I E G    G+I+ +  L+  H  ++  +   H+  F  +E +
Sbjct: 200 GIVADINENLSPLSDIYIAEAGARTRGDIKEIGVLLEHHYGIVGKVGEQHMEYFRTLENV 259

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQL----- 260
              K E+                         + +  +K ++S+ G +  +  +      
Sbjct: 260 RETKFEL-------------------------AQSPRLKELFSYEGNTPPSGIKATSFPT 294

Query: 261 --RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             R  K   + +  E+ ++G+        +G     N+   + +   L   ++   + ++
Sbjct: 295 ETRNIKATLKGTSFEMLIEGQFYPFETEVLGEFNVTNISAAILVALRLGIPIEKIQRQVA 354

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P   R ++    L      ++D+S+N N   M  AI    ++S    GR++ V   +
Sbjct: 355 RLKPIPHRLQKMEVNLK----LILDDSFNGNLEGMLEAI----RLSSLYYGRKVIVTPGL 406

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E  E +   +  LA+ ++        L+G   L    A  +       +  + L   ++
Sbjct: 407 VESTEEA---NTTLAQAINET-FDIAILTGELNLKTLSAHIQKPQKVVVKEKEALEEVLK 462

Query: 439 SSLVDGDVVVV 449
           ++  +GD+++ 
Sbjct: 463 ATTREGDLILF 473


>gi|83949551|ref|ZP_00958284.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
 gi|83837450|gb|EAP76746.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
          Length = 470

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 148/411 (36%), Gaps = 49/411 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV    ++L  L +L            +A+ G+ 
Sbjct: 70  GAEVVVISSAIKPGNPELDAARARGLPVVRRAEMLAELMRLKSN---------VAVAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L          G ++  +     +     +   G  E  +    E   
Sbjct: 121 GKTTTTTMVAALLDH--------GKFDPTVINGGIIHAYGSNARVGAGEWMVVEADESDG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++   E +     E    +   G      DD+  + L  
Sbjct: 173 TFNRLPATIAIVTNIDPEHMEHWGTEENLHRGFYEFVSNIPFYGLAVCCTDDADVQTLVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHM 292
           K   +  + + ++G +  AD +    +  + Q+  ++ L+G+       + V    G H 
Sbjct: 233 K---VTDRRVVTYGFNAQADVRGMNLRYEAGQAHFDIALRGEGDDKVIKDCVLPMPGDHN 289

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   L        +AL+ F     R  R      +    +I + Y  +P  
Sbjct: 290 VSNALSAVAVARHLGMRSAEIREALANFGGVNRRFTRV----GEVDGVVIIDDYGHHPTE 345

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFH 410
           + A +    Q +   EGR IAV         LS  F    A      +  IS V+ +G  
Sbjct: 346 IAAVLKAARQAT---EGRVIAV-HQPHRYSRLSHHFEEFCACFNEADVVGISDVYAAGED 401

Query: 411 VLA------LKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSN 453
            +       L   L R  H H    +D   L   ++     GD+VV   + 
Sbjct: 402 PIPGASRDDLVAGLIRHGHRHARALLDEGDLTRLVREQAGPGDMVVCLGAG 452


>gi|182435249|ref|YP_001822968.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|229620435|sp|B1VWF9|MURC_STRGG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|178463765|dbj|BAG18285.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 466

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 85/427 (19%), Positives = 155/427 (36%), Gaps = 43/427 (10%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKL 98
           A+    + GH      +   A  VVV++ + A        G L++PV    D L +L   
Sbjct: 52  ALGATVHIGH--AAGHLADDASCVVVSSAIRADNPELLRAGELAVPVVHRSDALASL--- 106

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                  +    IA+ G+ GKTTT  ML +ALSS+    A   +    +  P T A    
Sbjct: 107 ------MNGLRAIAVAGTHGKTTTTSMLAVALSSLG--LAPSYAIGGDLEGPGTNATHGE 158

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + E   S     ++      P +A++  +   H +N++ ++EI  +       + 
Sbjct: 159 G-DIFVAEADESDRSFQKY-----DPEVAIVLNVELDHHANYASMDEIYDSFETFVGKIV 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ ++ D      L  +   L    + ++G +++AD ++ K       S + V L G
Sbjct: 213 PGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRGLTSEVTVLLNG 272

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K +       G H A N +  L     L         AL  +   +   +R +       
Sbjct: 273 KFLTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVK---RRLQLKGEAAG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +SY  +P  M A +  +   +      RI V+     +   +Q    ++ + L+ 
Sbjct: 330 VQVI-DSYAHHPTEMTADLEAMRGAAADA---RILVVFQ-PHLFSRTQELGTEMGQALAR 384

Query: 399 YNISHV---------WLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + S V          + G     + DA       V        +   +      GD+V+
Sbjct: 385 ADASVVLDIYPAREDPIPGITSALIIDAAKEAGAEVTAVHDQADVPAAVAGMAKSGDLVL 444

Query: 449 VKSSNSC 455
              +   
Sbjct: 445 TMGAGDV 451


>gi|260434248|ref|ZP_05788219.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418076|gb|EEX11335.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 469

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 150/438 (34%), Gaps = 51/438 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+    +    A +VVV+T +      L       +PV    D+L  L +L         
Sbjct: 60  FVGQRAENLDNAAVVVVSTAIKPGNPELDGARALGLPVVRRADMLAELMRLKSN------ 113

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   +          G ++  +     +     +   G  E 
Sbjct: 114 ---IAIAGTHGKTTTTTMMAELM--------VAGDFDPTVINGGVIHAYGSNARMGQGEW 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E     + +   IA++T I P H+ ++   + + +   +    +   G      
Sbjct: 163 MVVEADESDGSFNRLPATIAIVTNIDPEHMEHWGDFDRLRAGFHDFVSNIPFYGLAVCCT 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVV 284
           D +  + L  +   +  + + ++G +  AD +          +  ++ LQ +        
Sbjct: 223 DHAEVQALVGR---ITDRRVRTYGFNAQADVRAVNLTYKGGIAHFDIHLQYEDTVIEGCT 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L         AL+ F       +R+         T+ID+
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMKTAQIRDALANFGGVN---RRFTKVGEVNGVTIIDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVL 396
            Y  +P  + A +    Q +   EGR IAV         LS  F          D+  + 
Sbjct: 337 -YGHHPVEIAAVLKAARQAT---EGRVIAV-HQPHRYSRLSNLFEDFCACFNDADVVAIA 391

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNS 454
            +++     + G     L   L R  H H    +D   L   ++     GD+VV   + +
Sbjct: 392 EVFSAGEDPIEGASRDDLVQGLIRHGHRHARALLDEGDLERLVREQARPGDMVVCLGAGT 451

Query: 455 CGFYRLINLLLEEFPAIQ 472
              +   N L +     Q
Sbjct: 452 ISTW--ANALPDRLQVKQ 467


>gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
 gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 141/375 (37%), Gaps = 35/375 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI+G+ GKTTT  M+   L           +YN  + V   + ++  +   G  E 
Sbjct: 102 KNVIAISGTHGKTTTTSMIGYILKKA--------NYNPTVLVGAFVKQLGGNFVIGSKEY 153

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G +  N 
Sbjct: 154 LVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPASGFLIANC 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVH 285
           DD   + + ++ +      I      +  D               +V+     +   +  
Sbjct: 214 DDKNVKDIISELNT----QIICISTKEKTDIFADNISCSDGYYEFDVKNNNDKILAHIKL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G+H   N L    + S L  +  T   A++ F    G  +R   A       L D+ 
Sbjct: 270 NIPGFHNVYNALAAFAVASKLGVESITIEHAIAEF---CGASRRLEKAGEFDGICLYDD- 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---IS 402
           Y  +P  +KA+++ L ++S   +G+  A+           ++   + AE LSL +   I+
Sbjct: 326 YAHHPTEIKASLNTLKKLS---QGKVFAIF--QPHTFSRLKNLLNEFAESLSLADKVIIT 380

Query: 403 HVWLS------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            V+ +      G     L   L    +   Y  + + +  ++      GD++    +   
Sbjct: 381 DVYAAREKNNFGITSENLCLKLKEIGVDCEYISSFEDIACYVVKEAKKGDIIATIGAGDI 440

Query: 456 GFYRLINLLLEEFPA 470
              + I+++L++ P 
Sbjct: 441 N--KCIDIILKKVPV 453


>gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 131/375 (34%), Gaps = 35/375 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI+G+ GKTTT  M+   L           +YN  + V   + ++  +   G  E 
Sbjct: 102 KNVIAISGTHGKTTTTSMIGYILKKA--------NYNPTVLVGAFVKQLSGNFVIGSKEY 153

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G +  N 
Sbjct: 154 LVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKISTSGFLVANC 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVH 285
           DD   + + ++ +      I      +  D               +V+ +       +  
Sbjct: 214 DDKNVKDIISQLNT----QIICISTKEKTDIFADNISCIDGYYEFDVKNKDDETLAHIKL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G+H   N L    + S L  +  T   A+S F    G  +R           L D+ 
Sbjct: 270 NIPGFHNVYNALAAFAVASKLGVESITIEHAISEF---CGASRRLEKVGEFDGIYLYDD- 325

Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  +KA+++ L +           PH   R   +L +  E   L+         V 
Sbjct: 326 YAHHPTEIKASLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAESLSLADK-----VIVT 380

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y        G     L   L    +   Y  + + +  ++      GD++    +   
Sbjct: 381 DVYAAREKNTFGITSENLYLKLKEIGVDCEYISSFEDIASYVIKEAKKGDIIATIGAGDI 440

Query: 456 GFYRLINLLLEEFPA 470
              + I+++L++ P 
Sbjct: 441 N--KCIDIILKKVPV 453


>gi|254469048|ref|ZP_05082454.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
 gi|207087858|gb|EDZ65141.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
          Length = 461

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 137/402 (34%), Gaps = 38/402 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +  + +IP+    ++L  L +             IAI G+ GKT+T  +L
Sbjct: 73  AIPKNNPEIVAAKNQNIPIIPRAEMLSELMRFKEG---------IAIAGTHGKTSTTSIL 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              ++        +      I      AR+       I E   S    +      + P  
Sbjct: 124 ATIMNDAGLDPTYV--IGGRINSLRQSARLGKSKHM-IVEADESDASFLH-----LNPSN 175

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++T I   H+  +    E +     +    +     +FL  DD   + ++     L  +
Sbjct: 176 VLVTNIDYDHMETYGHDEERLKQTFVDFIHQIPFYNEVFLCIDDKNIKSIQK----LIAR 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I ++G SK AD+   +      +S   V     + +S  V     G H   N L  + I
Sbjct: 232 PIITYGFSKKADYYPDRVVIKKNKSSFRVNSISKKIRSFSVEIDMPGRHYILNTLGAIAI 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L        KAL  F     R   Y           + + Y  +P  +KA +     
Sbjct: 292 ALSLNIKPQIISKALKKFKGVSRRFDLYEEFKLGEKNIHLIDDYGHHPTEIKAVLD---S 348

Query: 363 ISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA---LK 415
           I     G++I  V          ++       ++L++ +   +  ++ +G   +      
Sbjct: 349 IKKGFPGKKINLVF--QPHRYSRTKDLFEQFVQILAMADRLFLFEIYAAGEQAIKGINSH 406

Query: 416 DALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +       Y  + M    L I+  + D ++++V  + S G
Sbjct: 407 ELIKNIKKEKYILDDMAKARLLIEDKIKDDEILLVMGAGSVG 448


>gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
 gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
          Length = 401

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 135/416 (32%), Gaps = 62/416 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+     S+       +  I   S  +     F  IKG + DGHD+I+ AV+ G
Sbjct: 1   MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60

Query: 65  AGLVVVNTDMVASIGSLSI-------------------PVFGVDDVLGALNKLAVAARLR 105
           A  VVV+   + ++                         V GV D   AL +++ A    
Sbjct: 61  AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120

Query: 106 SKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------G 148
               +  I ITG+ GKTTT  +    L         +G+   +                 
Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180

Query: 149 VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEE 205
           +   LA+M  +     + E+    +   R     +   I V   I P H+     +   E
Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQR--VEGIFFDIGVFLNIEPDHIGPGEHASFAE 238

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQ 259
               K+ +    +      +N DD   E +    H   I+T    G++      + AD  
Sbjct: 239 YLYCKSRLLRQCQAG---IVNRDDRNTEKILF-GHTCDIETFSVLGENGVDAPGQKADIV 294

Query: 260 LRKWKQCSEQSWM--EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             +     ++  +       GK  E +    G     N L  + +        D    A 
Sbjct: 295 AERITFSMKEGRLYSHFFTDGKE-EFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDA- 352

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                +   G+     ++  F  L+D  Y  N  S++  +  L    P   GR + 
Sbjct: 353 --LQRQTVPGRCENVRISDKFVFLVD--YAHNEMSLRNLLGTLRGFDP---GRLVV 401


>gi|220906333|ref|YP_002481644.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7425]
 gi|254765995|sp|B8HWY0|MURC_CYAP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219862944|gb|ACL43283.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7425]
          Length = 482

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 154/406 (37%), Gaps = 47/406 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L  P+    D+L AL +             IA+ G+ GKTTT  M+   L         
Sbjct: 93  ELGCPILHRSDLLAALIERY---------QSIAVAGTHGKTTTSSMIGYLL--------L 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G  +  I +   +     +   G+ E  ++   E         P I VIT I   H  +
Sbjct: 136 QGGVDPTIIIGGEVQAWEGNARTGMGEYLVAEADESDGSLAKFAPQIGVITNIELDHPDH 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNAD 257
           +S +E++           +   T+   +D      ++ +   L  +++ S+   +   AD
Sbjct: 196 YSNLEQVIKIFETFANHCQ---TVVACWDCP---TIRDRLTVLPDQSVVSYSLFRESGAD 249

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           + + +     + +  +V  +G+ + E+    +G H  +N L  + +  +L  D  T  + 
Sbjct: 250 YSVDQISYGPQGTLAQVWERGELLGELSTKLLGAHNLKNALAAVAVGRLLGLDFITISRG 309

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV----LSQISPH--GEGR 370
           ++ F   EG  +R+           +D+ Y  +P+ ++A ++     L           R
Sbjct: 310 IARF---EGARRRFEVRGEAHGIRFVDD-YAHHPSEIRATLAAGRLQLKSREEFISPWQR 365

Query: 371 RIAVL--GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLALKDALPR-SI 422
            +AV               F     +   L  ++ ++ +G          L D +     
Sbjct: 366 LVAVFQPHRYTRTFTFLTEFSQAFGD-ADLVVLTDIYSAGERDRLVQGQHLADCMAEYHA 424

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            V Y  +++ + LF++ +L  GD+V+V  +      ++I  LL+ +
Sbjct: 425 QVQYQPSLEEVKLFLKQTLRPGDLVLVLGAG--NLNQIIPELLDYY 468


>gi|86282551|gb|ABC91614.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CFN
           42]
          Length = 452

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 162/432 (37%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +PV    ++L  L +   A
Sbjct: 35  EVFVGHR----AENLGDAEVVVVSTAIRKSNPELIAAREKLLPVVRRAEMLAELMRFRNA 90

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI G+ GKTTT  ++   L +       I      I    T ARM    +
Sbjct: 91  ---------IAIGGTHGKTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-E 138

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   +AVIT I P HL ++   + + +A  +  E +   G
Sbjct: 139 WMVVEADESDGTFLK-----LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYG 193

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---- 277
              +  D    + L  +      + I ++G++  AD + +  +    +S  +V+++    
Sbjct: 194 FGVMCLDHPEVQSLVGRIE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRT 250

Query: 278 GKSME---VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           G+  E   +V    G H   N    + + + L    +   K L+ F   +   +R+    
Sbjct: 251 GQRTELKGLVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVK---RRFTLTG 307

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
                 + D+ Y  +P  +KA +    +     +GR IAV        L  + E  E + 
Sbjct: 308 EWNGVQIFDD-YGHHPVEIKAVLKAAREA---CKGRIIAVHQPHRYTRLASLFE--EFAA 361

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   +  +Y      + G    +L   +    H    +  + + L   +      
Sbjct: 362 CFNDADSILLAPVYAAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKP 421

Query: 444 GDVVVVKSSNSC 455
           GD VV+  + S 
Sbjct: 422 GDFVVLLGAGSI 433


>gi|322834419|ref|YP_004214446.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
 gi|321169620|gb|ADW75319.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
          Length = 495

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 143/419 (34%), Gaps = 45/419 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 91  AISSDNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T   +            N  +              F I E   S    +      ++P +
Sbjct: 142 TSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRFLIAEADESDASFLH-----LQPMV 193

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 194 AIVTNIEADHMDTYQGDFEILKQTFINFLHNLPFYGRAVMCIDDPVIRELIPRV----GR 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G S++AD  +  ++Q   Q    ++ Q    + V  +  G H A N    + + +
Sbjct: 250 HMTTYGFSEDADVIIENYRQVGAQGHFTLRRQDLPLISVTLNAPGRHNALNAAAAVAVAT 309

Query: 305 ILTADVDTAIKALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 D  ++AL+ F     R              +    ++ + Y  +P  + A I  
Sbjct: 310 DENISDDAILRALAGFQGTGRRFDFLGEYALENVNGKTGSAMLVDDYGHHPTEVDATIKA 369

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD 416
                 +   R + +          ++  + D A VLS  ++     V+ +G   +   D
Sbjct: 370 ARAGWANK--RLVMIF--QPHRYTRTRDLYDDFANVLSQVDVLIMLDVYPAGEAPIPGAD 425

Query: 417 --ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +L R+I             ++ +   +   L   D+V+V+ + + G  R+   L ++
Sbjct: 426 SRSLCRTIRARGKLDPILVSDIEAVPESLAQILEGDDLVLVQGAGNVG--RVARKLADQ 482


>gi|118137669|pdb|2F00|A Chain A, Escherichia Coli Murc
 gi|118137670|pdb|2F00|B Chain B, Escherichia Coli Murc
          Length = 491

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 124/408 (30%), Gaps = 45/408 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    + L  L +             IAI G+ GKTTT   ++   +     
Sbjct: 97  AAHEARIPVIRRAEXLAELXRFR---------HGIAIAGTHGKTTTTAXVSSIYAEAGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +     +        + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----LQPXVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
                   E +          L   G      DD     L  +      +   ++G S++
Sbjct: 200 XDTYQGDFENLKQTFINFLHNLPFYGRAVXCVDDPVIRELLPRV----GRQTTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +  Q K    V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVEDYQQIGPQGHFTLLRQDKEPXRVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 315 KALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +AL  F     R              +     + + Y  +P  + A I       P    
Sbjct: 316 RALESFQGTGRRFDFLGEFPLEPVNGKSGTAXLVDDYGHHPTEVDATIKAARAGWPDKN- 374

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHVWLSGFHVLALKDALPR 420
               V          ++  + D A V         L +Y      + G    +L   +  
Sbjct: 375 ---LVXLFQPHRFTRTRDLYDDFANVLTQVDTLLXLEVYPAGEAPIPGADSRSLCRTIRG 431

Query: 421 SIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +          +   +   L   D+++V+ + + G  ++   L E
Sbjct: 432 RGKIDPILVPDPARVAEXLAPVLTGNDLILVQGAGNIG--KIARSLAE 477


>gi|225850494|ref|YP_002730728.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
 gi|254766015|sp|C0QPY2|MURC_PERMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225645302|gb|ACO03488.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
          Length = 459

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 155/439 (35%), Gaps = 51/439 (11%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            +      + DG D +++     +  V  +   +     L IP     ++L  L +    
Sbjct: 54  IYIGHDPKNVDGADVVVY-----SSAVKQDNPELLRAKQLGIPTIPRGEMLAELMRFKYG 108

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI GS GKTTT  M+   L         +      +    + A++    D
Sbjct: 109 ---------IAIAGSHGKTTTTSMVGTILGKTGYDPTVV--IGGKLEAYGSNAKLGSG-D 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + E   S    ++       P I  I  I   H+  +  + +I  A  +    +   G
Sbjct: 157 FIVTEADESDGSFLKLT-----PTIVSINNIDLEHIGFYKNLNDIKRAFIDFANKVPFYG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N DD   + +  +     I+    FG S+++D +    +  + +   +V   G   
Sbjct: 212 AVAVNIDDQNIKDIIPEIEKKIIR----FGISEDSDIRGYDLRLENGRYRFKVNDFG--- 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+     G H   N L  + I   L        +AL  F       +R+    + G  T+
Sbjct: 265 EIYLSIPGKHNVYNALAAISISVELGVPFCVIKEALENFKNAN---RRFEIKYD-GSVTV 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           ID+ Y  +P  +KA +S   ++      R IAV          + S +       ++ + 
Sbjct: 321 IDD-YAHHPTEIKATLSATREM--FDGRRIIAVF--QPHRYSRTFSLYDHFVRSFNIPDI 375

Query: 401 --ISHVWLSGFHVLALKDA--------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             I+ ++ +G   +   +               V Y E +   F  +++ L   DV+++ 
Sbjct: 376 TVITEIFPAGESPIDSVNGEKLSSDIKKETGKTVLYGEDLQKTFNILKNILKKDDVLLIL 435

Query: 451 SSNSC-GF-YRLINLLLEE 467
            + +      ++   L  +
Sbjct: 436 GAGNVTRLSDQISQFLKNK 454


>gi|157736998|ref|YP_001489681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698852|gb|ABV67012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 478

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 127/344 (36%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              I+ IT S GKT+ K  L   L +  K Y    S N   G+ L + + +P D    I 
Sbjct: 156 DLKIVEITASFGKTSIKNYLYHILKNKYKVYKTPRSVNTIAGIVLDVNKDLPADTQIYIA 215

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +T  + P I VI ++   H+  F  +E I + K EI +          
Sbjct: 216 EAGARVKGDIEEITMFLEPQICVIGSVGEQHIEYFKTLENIINTKMEILKSPNMKMGFV- 274

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                              + I  F  S      L   K   +  W +V++ G       
Sbjct: 275 ----------HESVPISNSQNITKFPNS------LHIVKSNLDGIWFDVEVGGNIEHFYA 318

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + +   L  D+     AL+     E R ++           ++D+S
Sbjct: 319 PILGSFNAINLTAVILVAHYLGMDILEIKAALTTLPQVEHRLQKIE----ANGKIIVDDS 374

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A+++ S      EGR++ +   + E  + +      LA+ +   N  +V 
Sbjct: 375 FNGNLEGMLEAVNICSS----YEGRKVIITPGLVESTDEANIL---LAKAIDE-NFDYVI 426

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L+G     L  A      V+  +    +   +      GD+++ 
Sbjct: 427 LTGSLNTQLLKANINENKVYILKDKSKMQEVLAELTRTGDLILF 470


>gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
 gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
          Length = 465

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 141/372 (37%), Gaps = 30/372 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++    A L     +  I G+ GKT+T  MLT+AL        C    +  IG  L  +
Sbjct: 99  LHRAQALAGLMEGHRVACIAGTHGKTSTTSMLTVALQH------CRLDPSFAIGGDLNES 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                   G   +  +   +  FLT+   P +AV+T + P HL +    E       E  
Sbjct: 153 GANAHHGEGGVFVAEADESDGSFLTY--SPSVAVVTNVEPDHLDHHGTAEAYTKVFTEFV 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWM 272
             +   G + +  DD   + L  ++  LG++ +  +G++     D ++ ++    +   +
Sbjct: 211 SRIVPGGLLIVCGDDPAADDLGRQAEDLGVR-VRRYGRTATGPGDARILEYVPAPDGGVV 269

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            + L G+ + V     G HMA N +  L     L A V   +  L+ F    G  +R+  
Sbjct: 270 RLVLDGEEVSVRVAVPGEHMALNAIAALLAGIELGAPVPGLVDGLAAFG---GVRRRFEF 326

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G   + D+ Y  +P  + A +  +   +    GR I V      +   +++F ++ 
Sbjct: 327 KGRAGDVRVYDD-YAHHPTEVAAQLRAVRTAAGS--GRVIVVF--QPHLYSRTKTFSVEF 381

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           AE         VL +Y        G     + D +  +  VHY    D            
Sbjct: 382 AEALSLADEVVVLDVYGAREEPEPGITGALIADRVTAA--VHYEPAFDVAAPLAAGLAKP 439

Query: 444 GDVVVVKSSNSC 455
           GD+VV   +   
Sbjct: 440 GDLVVTMGAGDV 451


>gi|285019573|ref|YP_003377284.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas albilineans GPE
           PC73]
 gi|283474791|emb|CBA17290.1| probable udp-n-acetylmuramate-l-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 478

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 133/403 (33%), Gaps = 55/403 (13%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               S  IP+     +L  L +             IA+ G+ GKTTT  +    LS    
Sbjct: 92  MEARSQRIPIMPRAAMLAELMRFRRG---------IAVAGTHGKTTTTSLTAAVLSE--- 139

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                G  +    +   L     +       + + E   S    +R     + P I+VIT
Sbjct: 140 -----GGMDPTFVIGGQLLAAGANAKLGGGQWLVAEADESDGSFLR-----LNPLISVIT 189

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL N+      I +A AE  + L   G   L  DD     L A++     + + S
Sbjct: 190 NIDADHLENYGNDFARIQAAFAEFLQRLPFYGLAVLCIDDPEVAALAAQTP----RHVMS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S+NAD +     Q   +    +++  G S  V     G H   N L    I   L  
Sbjct: 246 YGLSENADVRAEDVVQEGSRMHFTLRMPEGSSTAVTLALPGRHNVLNALAAAAIGWQLGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                    S      G G+R+          G    + + Y  +P  + A   V +   
Sbjct: 306 TPAAIA---SALQSFAGIGRRFNDLGEVVTANGARVRVVDDYGHHPRELAA---VFAAAR 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRS 421
                +R+ V             F    A VLS  +    S V+ +G   +   DA   +
Sbjct: 360 GGWPDKRLVVAFQPHRYSRTRDQF-DAFAAVLSEVDALVLSEVYPAGEAPIPGADARALA 418

Query: 422 IHVHYSETMD--------GLFLFIQSSLVDGDVVVVKSSNSCG 456
             +      +         L   +   L DGD++++  +   G
Sbjct: 419 RAIRARGRSEPVVVGQVVELGSVLPDVLQDGDLLLMMGAGDIG 461


>gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 483

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 141/410 (34%), Gaps = 42/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      SIPV    D+L  L +          +T + + G+ GKT+T  M
Sbjct: 78  AAIPKDNPELVRAAEESIPVIRRSDLLAELME---------GSTQLLLAGTHGKTSTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +AL +  +        +    +   L     +   G  E+ ++   E        +P 
Sbjct: 129 AVVALQAAGE--------DPSFVIGGQLNLAGTNAHQGAGEVFVAEADESDASLLRYKPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT I P HL  F   E+         + +   G + +  DD+       ++ A G+ 
Sbjct: 181 VAVITNIEPDHLDYFGTAEKYFEVFDSFADRIPPGGHLVVCLDDAEAAACGQRARARGV- 239

Query: 246 TIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
            ++ +G +  A    D         S+ ++ EV+L      +++       G HM  N  
Sbjct: 240 NVFGYGTAAAASRYPDIPAAAVITASDTTFAEVELTIGGVQRTVRYTLSIPGQHMVLNAA 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L   +++ AD     + L+ F     R +   +    +     + + Y  +P  + A 
Sbjct: 300 GALVACTLVGADPGKLAEGLTGFTGVRRRFELKGQLTGGRFAGVRVYDDYAHHPTEVTAV 359

Query: 357 ISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVW 405
           ++   +   +    G+ +A       +   + +F    A          +L ++      
Sbjct: 360 LTAARETVRAAGQGGKVVACY--QPHLYSRTIAFAEQFAAALSLADSVVLLDIFGAREEP 417

Query: 406 LSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + G     + D +    S    Y        + I      GD+V+   + 
Sbjct: 418 VEGVDSRIIIDQMDPEASARTVYEPNFSQAPVTIAELAEPGDLVLTMGAG 467


>gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 526

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 153/485 (31%), Gaps = 52/485 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63
           T  +L + I G       Q   ++ I +DS ++A +   F A+ G    G +F       
Sbjct: 21  TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 80

Query: 64  GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGK 119
           GA  V+ + D    +     + P   VDDV   L     +V         +I +TG+ GK
Sbjct: 81  GALAVLTDRDGATILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGK 140

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  +L   L         IG+    I       ++                   V   
Sbjct: 141 TTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHV 200

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TG 221
           + E+    L   R        ++A  T ++  HL     +EE   AKA  F         
Sbjct: 201 VMEVSSHALSLGR--VSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAAD 258

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD +   +     A   +T+ + GK  +    L   K+  EQS+         +
Sbjct: 259 HQVVCIDDEWGTRMAEV--AGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEV 316

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G     N  + L        D     + ++        G+  R    Q F  +
Sbjct: 317 PVTLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ---VAVPGRMERIDEGQDFLAV 373

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLA 393
           +D  Y   PA++ A +  L       +GR   V+G   +        MGELS     DL 
Sbjct: 374 VD--YAHKPAAVAAVLDTLRT---QIDGRLGVVIGAGGDRDATKRAPMGELSAR-RADLV 427

Query: 394 EVLSLYNISHVW-----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            V      S V                      + V            +      GD +V
Sbjct: 428 IVTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIV 487

Query: 449 V--KS 451
           V  K 
Sbjct: 488 VAGKG 492


>gi|319776620|ref|YP_004139108.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
 gi|317451211|emb|CBY87444.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
          Length = 475

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 147/422 (34%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV     +L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAMISMIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +       +
Sbjct: 346 YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IM 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGESPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 516

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 138/393 (35%), Gaps = 36/393 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL QA+ G   G    G V G  ID+R++   E F A+ G H  G  F   A  +GAG V
Sbjct: 24  DLAQAVGGTVHGDG--GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAV 81

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + +   +A +  L IP   V DV  +          R   + +   +TG+ GKTTT  +L
Sbjct: 82  LSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLL 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMS 170
              L  +    + +G+    +G     A                 +  +V   + E+   
Sbjct: 142 RHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSH 201

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L   R     +       T ++  HL     +E+    KA +F        + +  D  
Sbjct: 202 ALAMGR--VDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVII-VDGV 258

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGI 288
           + + L  +    G     +     + AD+Q +  +     + + ++   GK   V     
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLID 343
           G   A N  + + ++ +             +         R         L +    ++D
Sbjct: 319 GTFNAINAALAI-VMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD 377

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +  NP S K  +     +    +GR + V+G
Sbjct: 378 --FAHNPDSTKVLLDT---MRISTKGRLLLVMG 405


>gi|331001071|ref|ZP_08324702.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569376|gb|EGG51154.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 462

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 157/429 (36%), Gaps = 44/429 (10%)

Query: 46  IKGPHYDGHDFILHAVQKGAG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           I    + GHD   +    G       V  +   V    + +IPV     +L  L +L   
Sbjct: 49  IGAEIFIGHD-ASNVGDAGVVVTSTAVHADNPEVVEAKNRNIPVVPRAIMLAELMRLRQG 107

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IA+ G+ GKTTT  ++T  L                IG  L  A     + 
Sbjct: 108 ---------IAVAGTHGKTTTTSLITSILERGGLDP------TFVIGGRLNAAGSNAKLG 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
            G++ +  +   +  FL   + P I+V+T I   H+  +   +  +  A  +  + L   
Sbjct: 153 QGLYIVAEADESDASFLN--LSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFY 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +  +      +  K      K I ++G  ++A  +    +    Q    +   G +
Sbjct: 211 GRAVMCIESENVRAILPKI----TKPILTYGFREDAQIRAENIRADGTQMHFTLVRDGAA 266

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
             E+  +  G H   N L  +G+   L   ++   +AL+ F     R   +      +G 
Sbjct: 267 PEEITVNLPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGE 326

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A I+      P    RR+ V             F  DL  VLS 
Sbjct: 327 KFLVVDDYGHHPTEMAATIAAARGAYPD---RRLLVAFQPHRYTRTRDCF-EDLVRVLSN 382

Query: 399 YNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +      V+ +G   +   D+  L RSI +       ++   D +   I +++ +GDVV
Sbjct: 383 ADALVLEAVYPAGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVMELINNNVKEGDVV 442

Query: 448 VVKSSNSCG 456
           +V  + + G
Sbjct: 443 LVMGAGNIG 451


>gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
 gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
          Length = 481

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 96/493 (19%), Positives = 174/493 (35%), Gaps = 68/493 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH          + IS DSR +     FFA KG  +   +++L A+ +G G
Sbjct: 17  FREIID--QGHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFKK-EYLLSAITQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL---- 178
                L+   +    + + +  +      +    P  +D         H G    +    
Sbjct: 128 FAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVHNGRSHLIMEVS 187

Query: 179 --------THLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    + +   + V   I+P H+        E+    K  + E    +  + +N D
Sbjct: 188 SQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVVINSD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVHH 286
              F +LK +             +++  DF   +     E S        GK + +    
Sbjct: 245 MDHFSVLKEQV------------ENQEHDFYGSQSSNQIENSKAFSFSATGKLAGDYDIQ 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG+   +N +        L A ++   K ++        G+        G    ID  Y
Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L+ +    V+L
Sbjct: 348 AHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 407 SG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSNSCG 456
           +         +A+ D +   I   V      +       +      D V++  K ++   
Sbjct: 402 TADDPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADC-- 459

Query: 457 FYRLINLLLEEFP 469
            Y+++    E++P
Sbjct: 460 -YQIVQGKKEDYP 471


>gi|329298860|ref|ZP_08256196.1| UDP-N-acetylmuramate--L-alanine ligase [Plautia stali symbiont]
          Length = 491

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 134/410 (32%), Gaps = 51/410 (12%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                IPV    ++L  L +             IAI G+ GKTTT  M+T   +      
Sbjct: 98  AREQRIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVTSIYAEGGLD- 147

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                 N  +              + I E   S    +      ++P +A++T I   H+
Sbjct: 148 --PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNIEADHM 200

Query: 198 S-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                  E +          L   G   +  DD     L  +      + + ++G S +A
Sbjct: 201 DTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDVVIRDLIPRV----GRQVTTYGFSDDA 256

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D ++  ++Q   QS   +  Q K +  V  +  G H A N    + + S    D +  + 
Sbjct: 257 DVRVENYEQRGAQSHFTLIRQDKPVLHVTLNAPGRHNALNAAAAVAVASEEGIDDNAILA 316

Query: 316 ALSVFHPKEGRGKRYRC--------ALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           AL  F    G G+R+             +    ++ + Y  +P  +   I       P  
Sbjct: 317 ALESFQ---GTGRRFDVLGEFDTAAVNGKPGSAMLVDDYGHHPTEVDVTIKAAHAGWPEK 373

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDAL 418
             + + V          ++    D A VLS          Y      + G    +L  A+
Sbjct: 374 --KLVMVF--QPHRYTRTRDLFDDFANVLSQVDVLLMLDVYPAGEAAIPGADSRSLCRAI 429

Query: 419 PRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V        + L   +   L   D+V+V+ + + G  ++   L E
Sbjct: 430 RNRGKVDPILVSEHEALPDALAPLLSGDDLVIVQGAGNIG--KIARKLAE 477


>gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 516

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 139/393 (35%), Gaps = 36/393 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL QA+ G   G    G V G  ID+R++   E F A+ G H  G  F   A  +GAG V
Sbjct: 24  DLAQAVGGTVHGDG--GSVRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADAASRGAGAV 81

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + + + +A +  L IP   V DV  +          R   + +   +TG+ GKTTT  +L
Sbjct: 82  LSDPEGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLL 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMS 170
              L  +    + +G+    +G     A                 +  +V   + E+   
Sbjct: 142 RHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSH 201

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L   R     +       T ++  HL     +E+    KA +F        + +  D  
Sbjct: 202 ALAMGR--VDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVII-VDGV 258

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGI 288
           + + L  +    G     +     + AD+Q +  +     + + ++   GK   V     
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLID 343
           G   A N  + + ++ +             +         R         L +    ++D
Sbjct: 319 GTFNAINAALAI-VMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD 377

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +  NP S K  +     +    +GR + V+G
Sbjct: 378 --FAHNPDSTKVLLDT---MRISTKGRLLLVMG 405


>gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
 gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
          Length = 519

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 94/487 (19%), Positives = 156/487 (32%), Gaps = 60/487 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L A+       V       I+ DSR + P   FFA  G   +   FI  A+  GA 
Sbjct: 11  IGEILSALNLLVADNVGSVVARVITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAV 70

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LVV   D         I V  V  ++  +     A       TII ITG+ GKT+  + +
Sbjct: 71  LVVTEADYADP---RVIRVEAVHSLVLQMVGHVCAVNFD-DLTIIGITGTNGKTSVAQFI 126

Query: 127 TIALSSIK-KTYACIGSYNN----HIGVPLTLARMPVDVDFG------------------ 163
             ALS       A IG             L   +   +   G                  
Sbjct: 127 AGALSRSGAPHTASIGMIGTLGAGMWSSGLENLQPTANTTPGLLETLRYAVDFIRQGARY 186

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKT 220
            + E+    L + R     +   +AV T ++  HL     + E  +AK ++F   GL   
Sbjct: 187 VVMEVSSHALEQNRL--QGLPIRLAVFTNLSRDHLDYHGTMAEYFAAKTKLFAWPGLRAG 244

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNAD---FQLRKWKQCSEQSWMEVQ 275
               +N+D++  ++L     A      Y  G    + AD    ++           ++V+
Sbjct: 245 ---IINFDEAQADVLFEALGATADCWAYGLGDPDWRVADCQHVRVTSITALPNGIDIQVR 301

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  +    +G     N++  L  V  L   ++TAIKAL    P  GR +       
Sbjct: 302 TPLGEARLQPSLVGLFNGANIMAALAAVLALGMPLETAIKALDQSTPPPGRMQMITLPSG 361

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                     Y   P ++   +  L        G+ I V G   +     +      AE 
Sbjct: 362 ARALV----DYAHTPDALDQVLRALRDHR-DAAGKIICVFGCGGDRDRGKRPLMAATAER 416

Query: 396 LSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           L+      + ++  +  +         ++  L                         GD 
Sbjct: 417 LA----DQIVMTADNPRSEAPQAIIADMRGGLASPDTASVELDRRAAIESALMQAKAGDW 472

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 473 VLIAGKG 479


>gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 509

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 153/485 (31%), Gaps = 52/485 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63
           T  +L + I G       Q   ++ I +DS ++A +   F A+ G    G +F       
Sbjct: 4   TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 63

Query: 64  GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGK 119
           GA  V+ + D    +     + P   VDDV   L     +V         +I +TG+ GK
Sbjct: 64  GALAVLTDRDGATILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  +L   L         IG+    I       ++                   V   
Sbjct: 124 TTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHV 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TG 221
           + E+    L   R        ++A  T ++  HL     +EE   AKA  F         
Sbjct: 184 VMEVSSHALSLGR--VSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAAD 241

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD +   +     A   +T+ + GK  +    L   K+  EQS+         +
Sbjct: 242 HQVVCIDDEWGTRMAEV--AGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEV 299

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G     N  + L        D     + ++        G+  R    Q F  +
Sbjct: 300 PVTLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ---VAVPGRMERIDEGQDFLAV 356

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLA 393
           +D  Y   PA++ A +  L       +GR   V+G   +        MGELS     DL 
Sbjct: 357 VD--YAHKPAAVAAVLDTLRT---QIDGRLGVVIGAGGDRDATKRAPMGELSAR-RADLV 410

Query: 394 EVLSLYNISHVW-----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            V      S V                      + V            +      GD +V
Sbjct: 411 IVTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIV 470

Query: 449 V--KS 451
           V  K 
Sbjct: 471 VAGKG 475


>gi|162329635|ref|YP_470341.2| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli CFN 42]
 gi|109892728|sp|Q2K6C2|MURC_RHIEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 471

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 162/432 (37%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +PV    ++L  L +   A
Sbjct: 54  EVFVGHR----AENLGDAEVVVVSTAIRKSNPELIAAREKLLPVVRRAEMLAELMRFRNA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI G+ GKTTT  ++   L +       I      I    T ARM    +
Sbjct: 110 ---------IAIGGTHGKTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-E 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   +AVIT I P HL ++   + + +A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---- 277
              +  D    + L  +      + I ++G++  AD + +  +    +S  +V+++    
Sbjct: 213 FGVMCLDHPEVQSLVGRIE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRT 269

Query: 278 GKSME---VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           G+  E   +V    G H   N    + + + L    +   K L+ F   +   +R+    
Sbjct: 270 GQRTELKGLVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVK---RRFTLTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
                 + D+ Y  +P  +KA +    +     +GR IAV        L  + E  E + 
Sbjct: 327 EWNGVQIFDD-YGHHPVEIKAVLKAAREA---CKGRIIAVHQPHRYTRLASLFE--EFAA 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   +  +Y      + G    +L   +    H    +  + + L   +      
Sbjct: 381 CFNDADSILLAPVYAAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV+  + S 
Sbjct: 441 GDFVVLLGAGSI 452


>gi|78187343|ref|YP_375386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium luteolum DSM 273]
 gi|78167245|gb|ABB24343.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 491

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 132/365 (36%), Gaps = 41/365 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKTTT  ++   L S        G     I     +   P       F + 
Sbjct: 122 TSIVVAGTHGKTTTTSIIAWLLESGGLK---PGFLVGGIPENFGIGCRPSGRSEAGFFVS 178

Query: 169 MSHLGEIRFLTH-----LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                +  F        L RP IA+I  +   H   F+ +EEI  +   +   +   G +
Sbjct: 179 EGDEYDTAFFDKRSKFLLYRPDIALINNVEFDHADIFNSLEEIKRSFRLLVNLIPSKGAL 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD     + A +       + +FG ++  D+         E S  +V  +G  ++ 
Sbjct: 239 IVNGDDPVAMEVAAGARC----RLETFGLTEGCDWMAGNIDVGEEGSTFDVYYKGSLLQR 294

Query: 284 VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            H    G +   N + ++ + ++    ++   + L  F   + R +       +G  TL+
Sbjct: 295 FHAPLFGNYNITNTVASIAVATLAGMTLEQVEEGLPGFLRPKRRME--TIGTFEGNITLV 352

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++ +  +P +++  +  + +       RRI    +       +++   D  E+ + +  +
Sbjct: 353 ED-FAHHPTAIRVTLEAIRE---RWPRRRILTCFE-PRSNTTTRNIFQD--ELAACFGPA 405

Query: 403 HVWLSGF-------------HVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVD 443
            V + G                  LK+AL R     +    D       +  F+  +L  
Sbjct: 406 EVVVMGKVHRPERYGPGGSLDTGKLKEALEREGKTVFLAGADPDDYPGDIVRFLHENLQP 465

Query: 444 GDVVV 448
            DVV+
Sbjct: 466 NDVVL 470


>gi|262280495|ref|ZP_06058279.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|299768392|ref|YP_003730418.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
 gi|262258273|gb|EEY77007.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|298698480|gb|ADI89045.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
          Length = 482

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 154/416 (37%), Gaps = 49/416 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A ++VV+T +      +        P+    ++LG L +             IA+ G+
Sbjct: 80  KNANVLVVSTAIDPENPEIKAAIEQRTPIVRRAEMLGELMRYR---------HGIAVAGT 130

Query: 117 VGKTTTKEMLTI--ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  +LT   A  ++  TY  IG   N  GV   L     +  F + E   S    
Sbjct: 131 HGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVAEADESDASF 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      ++P  A++T I   H+  +    +++     +    L   G   +  DD+   
Sbjct: 186 L-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIR 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            +  +      + + ++G +++ D +    +Q   +S   V  +G+  + +  +  G H 
Sbjct: 241 EIMPRV----GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGMHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +G+ +      D   +AL+ F     R +             + + Y  +P  
Sbjct: 297 ILNALAAIGVATDEGVSDDAISRALAGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKE 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           ++A I    Q   H + R + +          ++    D  EVLS          Y    
Sbjct: 357 VEATIKAARQ--SHPDRRLVMLF--QPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAGE 412

Query: 404 VWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
             + G     L  ++     V     + ++G L   +Q+ L   D+++ + + + G
Sbjct: 413 KPIVGADSRTLARSIRLRGQVEPILVDPVEGNLQNIMQNVLQPNDLLLTQGAGNVG 468


>gi|51473445|ref|YP_067202.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia typhi str.
           Wilmington]
 gi|59798218|sp|Q68XC2|MURC_RICTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51459757|gb|AAU03720.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia typhi str.
           Wilmington]
          Length = 498

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 134/409 (32%), Gaps = 44/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +       IP+    ++L  L +L            +A++GS GKTTT  +
Sbjct: 80  SAIHQNNPEIKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGKTTTTSL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +     +           N  I    +        ++ I E   S    I      +   
Sbjct: 131 IACLFEAAGL---YPTVINGGIINNKSTNAYLGSSNYLIAEADESDATFIH-----IPST 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I P HL  +   E +  A       L   G      D      L      +  +
Sbjct: 183 IAIITNIDPEHLDYYQDFEILIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDD---ITER 239

Query: 246 TIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-----GKSM--EVVHHGIGYHMAQNML 297
            I ++G   ++A             S  +V++      G ++  ++     G H   N L
Sbjct: 240 KIITYGIDAEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L   +       + F   +    R    + +    +I + Y  +P  +KA +
Sbjct: 300 AAIAVGIELDFGIKAIKNGFNNFKGVK----RRFTKVAEYNQAVIIDDYAHHPEEIKATL 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGF 409
           +    I+    G+ IA+         +   F          D+  + ++Y      + G 
Sbjct: 356 ATAKNIANQQNGKVIAIF-QPHRYSRIKYLFDDFMLCFADADILYITNIYAAGEKPIEGI 414

Query: 410 HVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +L D + ++      ++   +D +   I      GD++++  + + 
Sbjct: 415 TGQSLVDKMTQNKYHDKANFLAELDDVVSVIIDHAASGDMIIMMGAGNI 463


>gi|28493196|ref|NP_787357.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
 gi|28476237|gb|AAO44326.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
          Length = 475

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 148/390 (37%), Gaps = 35/390 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++      +     +I+I GS GKT+T  M+  AL  +            +      L 
Sbjct: 101 LHRSLALKWITRGKRLISIAGSHGKTSTTAMIATALHVLGNKCGVANGSYMNFFSANALL 160

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D  + E   S    + + T      I+V+  I+  H+  +     +  +  +  
Sbjct: 161 GLN---DLFVIEADESDGSFLFYDT-----DISVVNNISMDHVDYYGSQSALEGSFFDF- 211

Query: 215 EGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             L  +    ++ DD+       +LL++       K + +FGK+++AD  L +   C   
Sbjct: 212 -SLRSSDAAVISLDDAACIKIASKLLQSSGSRGPSKRVITFGKNRSADVCLYEM-GCMNP 269

Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +   V  +G+       G+ G H A N    L ++  L   +  +++A+  F     R +
Sbjct: 270 ARFTVLYEGRFYNAGFKGLFGEHHAVNTCAALSVLLCLGYGISESLEAILSFSGTRRRLE 329

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +  +  +    + D+ Y  +P  ++ A++ +  +      R IA+      +   + + 
Sbjct: 330 LHFDSGGKDGIKIFDD-YAHHPREIRTALTAIRSVQ---HTRLIALF--QPHLYSRTAAL 383

Query: 389 HIDLAEVLS----------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           H + A VL           +Y      + G     + DA     +V   E  D    F +
Sbjct: 384 HREFASVLENCADFTIILPVYAARESPIPGVDAKIIFDAYRDKRNVVMLEGFDHTLSFFR 443

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             L DGD+V+         Y++I  ++E+ 
Sbjct: 444 QFLRDGDLVITLGCGDV--YKIIPSIVEQL 471


>gi|42520747|ref|NP_966662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|42410487|gb|AAS14596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 524

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 167/525 (31%), Gaps = 105/525 (20%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY------------- 51
               +LL  I    I +     + G++ +   +     F  +    +             
Sbjct: 1   MKLRELLHNI----IDVNFDIEIKGVTCNPNRVKEGYLFVCVSAVSFQRVTLESRKPACI 56

Query: 52  ---------DGHDFILHAVQKG-------------AGLVVVNTDMVASIGSLSIPV---- 85
                      HD +   V +G                ++ N           IPV    
Sbjct: 57  QIFPTESQYHAHDCV-DVVIQGTKKDVIPVLDYLDPENLIANEHTKQLHNKNWIPVSATC 115

Query: 86  ------FGVDDV----LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 F V D           ++   + +    + A+TG+ GKT+  E       +   
Sbjct: 116 MTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGY 175

Query: 136 TYACIGSYNNHIG-----------------VPLTLARMP-VDVDFGIFELGMSHLGEIRF 177
             A IG+    I                  +  TL  +   +V+    E     + + R 
Sbjct: 176 NAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHGIDQYRI 235

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD-DSFFELL 235
             H +R   A  T  +  HL     I+E   AK  +F E L +  T+ LN D + +  LL
Sbjct: 236 --HGLRFTAAAFTNFSQDHLDYHKSIDEYFEAKKRLFYEVLPEGETVILNADINEYHALL 293

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           K          + ++GK+  +D  L +        ++ +++  +   +    +G   A N
Sbjct: 294 KIAEKRSN--KVITYGKT-GSDITLLEQTPTPNGQYLTIKIGDEIYNMFFPVLGQFQAYN 350

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  +GIV+    +      ++       GR ++ +              Y   P+++K 
Sbjct: 351 LLCAIGIVTSSGLNYREI--SIGKLVSPPGRMEKVQ--------PFAFVDYAHTPSALK- 399

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
               L  +  H   + + V G     G   +    ++ ++  +Y    V ++  +     
Sbjct: 400 --QALLSLKWHFNKKIVLVFGC---GGNRDRKKRSEMGKIAQMY-ADKVIITDDNPRDED 453

Query: 416 DALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV--KS 451
            A  R   + Y  +        + +   I  +  +G +++V  K 
Sbjct: 454 PAKIRHDILLYCPSALEIGDRKEAIEKGIDIAYNEGMILLVAGKG 498


>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
 gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
          Length = 556

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 87/523 (16%), Positives = 172/523 (32%), Gaps = 101/523 (19%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L QA+  +  G +    VN +SIDSR+I+  + F A++G    G  FI  A++KGA  ++
Sbjct: 18  LPQALSIYLDGAISAIPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAIL 77

Query: 70  VNT-----------------------------DMVASIGSLSIPVFGVDDVLGALNKLAV 100
             T                                    +  +PV G+    G  +   +
Sbjct: 78  SATTASDVFVEYRDEIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGKTSCAQI 137

Query: 101 AARLR-SKATIIAITGSVG-------------------------KTTTKEMLTIALSSIK 134
            A+L     + + + G++G                         K++     +   S   
Sbjct: 138 YAQLSAFNGSAVGVIGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQ--SRAG 195

Query: 135 KTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRFLTH 180
           +    +   +  +  P  +A                 + ++  + E+    L + R    
Sbjct: 196 QPGYSLSLVSTGMTTPDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSA- 254

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +  + A+ T +   HL     +    +AKA++FE +       +N DD F   L  K  
Sbjct: 255 -LDINSAIFTNLTHDHLDYHGDMVAYGNAKAKLFE-MPTINLAIVNLDDEFSHELTTKIA 312

Query: 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + S+     NAD  L   +    Q   ++    +   +    IG     N+L  
Sbjct: 313 --STVRVISYSIDNANADLYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSNLLAV 370

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L + S          + ++     +    R     NQ    ++ + +   P ++    +V
Sbjct: 371 LSVFSQQ----QNFSQVVASAQYLQPISGRMESVENQEGIQVVVD-FAHTPDALD---NV 422

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L  +S + +G    V G   +  +  +     +AE  +     HV ++  +  +      
Sbjct: 423 LQAVSEYVDGEVYCVFGCGGDRDQSKRPLMAAVAERYA----DHVVVTNDNPRSENPTDI 478

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +      + H    E  +    F       GD+VV+  K 
Sbjct: 479 AQQVVQGFSSNNHC-VIEEREEAIRFAIHHAKIGDMVVIAGKG 520


>gi|148273039|ref|YP_001222600.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|189028983|sp|A5CS50|MURC_CLAM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147830969|emb|CAN01914.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 476

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 154/426 (36%), Gaps = 37/426 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR     +A   +    + GHD    A    A  +VV   +          V   +  L
Sbjct: 45  DSRDSDAVQALRELGAEIHVGHD---AAHVGDADALVVTGALWQDNPEY---VLAKERGL 98

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L++    A L S   ++A+ G+ GKTT+  M+  AL    +        N  +   L 
Sbjct: 99  PILHRSQALAWLISGQRLVAVAGAHGKTTSTGMIVTALLEAGRD---PSFVNGGVIGGLG 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           ++  P   +  + E   S    + + T      +A+IT +   HL ++   E    A   
Sbjct: 156 VSSAPGSEELFVVEADESDGSFLLYDTS-----VALITNVDADHLDHYGSHEAFDDAFVR 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
                 +   + ++ DD     + A+        + +FG+   AD ++            
Sbjct: 211 FASAASE--LVVISSDDPGARRVTARIEG----RVVTFGEDPAADIRITDI-VTDGPVAF 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +   G S        G H A N      ++  L  D D AI  L+ F    G G+R+  
Sbjct: 264 TLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGLGVDPDDAIAGLAGFS---GTGRRFEL 320

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV----LGDMCEM--GELSQ 386
                  ++ D+ Y  +P  ++AA+     +   GEGR IAV    L     M  G+ ++
Sbjct: 321 HAEVRGVSVYDD-YAHHPTEVRAALEAARTV--VGEGRIIAVHQPHLYSRTRMMAGDFAR 377

Query: 387 SFHIDLAE---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             + +LA+   VL ++      + G     + +    + HV Y                D
Sbjct: 378 -VYEELADHTIVLDVFGAREDPIPGVTGALVSECFEDAGHVDYLPDWQEAADRAAEIARD 436

Query: 444 GDVVVV 449
           GD +V 
Sbjct: 437 GDFIVT 442


>gi|282857260|ref|ZP_06266500.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
 gi|282584910|gb|EFB90238.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
          Length = 476

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 140/402 (34%), Gaps = 36/402 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +A      IPV    ++L  L               I + G+ GKTTT  +
Sbjct: 80  SAIPASNPELAEARRKEIPVLQRAELLSLLFD---------SKNGIGVAGTHGKTTTTSL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L                I V   L  +  +   G+ E  ++ L E         P 
Sbjct: 131 ISYILEQAD--------MQPTIAVGGELCDIGCNAKLGMGEYMVAELDESDESFEYFHPL 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            +V+T +   H++ +  ++ +  A        ++ G +FL  +D+  + +          
Sbjct: 183 YSVVTNVDWDHVNQYPDLQAVIDAFGRFLRNTKEGGKLFLCGEDAGVKKVIEALPNDLKN 242

Query: 246 TIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            +Y FG+  + DF     +  C          +G+ M  +   I G H   + L   G+ 
Sbjct: 243 RMYLFGRDPSFDFYAADIQYHCGGGLNYTFYAKGRKMGTIELVISGEHNVLDSLAACGVA 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D   KA+ +FH   G  +R +         L+ + Y  +P  ++A ++ +  +
Sbjct: 303 HELGVSFDIVQKAMRMFH---GAKRRLQLRAMCPDNILVYDDYGHHPREIEATLNAVRLM 359

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLAL 414
            P    RRI ++         +Q+     AEVL+         +Y      + G     +
Sbjct: 360 YPD---RRILLIFQ-PHRYTRTQALFDRFAEVLASVPQVVLLPIYAADEQPIPGVSSELI 415

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + +       ++          S +  GD+++ + +   
Sbjct: 416 GATVAKLGGSCVLAQNKVEAAGRALSLVRPGDLILTEGAGDV 457


>gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
 gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
          Length = 476

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 140/375 (37%), Gaps = 39/375 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-----GS 80
            V G++ DSR +AP + + A+ G H  G DF   A+ +GA  V+ + +    I      +
Sbjct: 1   MVRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPA 60

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            ++PV    D    L  +A        +   ++ +TG+ GKTTT  +L   L +   T  
Sbjct: 61  AALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTG 120

Query: 139 CIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLV 182
            IG+    I                +   LA M    VD    E+    L + R     +
Sbjct: 121 LIGTVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHR--ADAL 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A+ T ++  HL     + +   AKA +F    +     +   D +   L A+    
Sbjct: 179 HFAGALFTNLSQDHLDFHPTMADYFEAKASLFVP-GRAAAAVIGVGDEWGRRLAARRPDA 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 +F     AD+  R        S +      G+ +E+     G     N L  L 
Sbjct: 238 -----VTFAVDGPADWTARDVTAGPTGSELLAAGPGGERVELSVPLPGVFNIANALGALA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  +  D   A   +       GR +R      Q F  L+D  +   P    A  ++L+
Sbjct: 293 LLVAVGVDPAAAAAGIGALPGVPGRMER--VDAGQPFLALVD--FAHTPD---AVTTLLA 345

Query: 362 QISPHGEGRRIAVLG 376
            + P  +GR I VLG
Sbjct: 346 TVRPLVKGRIIVVLG 360


>gi|169824118|ref|YP_001691729.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
 gi|167830923|dbj|BAG07839.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 461

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 144/398 (36%), Gaps = 41/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +   L + V      LGAL +             I ++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAARELGVDVVSRGVFLGALMRNYKY--------SIGVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L   K         +  I +   L  +  +V  G  E  ++   E +       P +
Sbjct: 131 AKILIDAK--------VDPSILLGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+I  I   HL  +  +  I +      + L++     +N DD   E L +         
Sbjct: 183 AIILNIDEDHLDFYKDLNHIVATFIGYMKNLDENSKAIINIDDKNCEPLLSHIKG----E 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGI 302
           I +FG +++ AD+ +         +    V  +   K  E     IG H   + +  +  
Sbjct: 239 IITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIGRHNIYDAVAAIIA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D+DT  K +  +H      +R           +  + Y  +P  +K  +  L +
Sbjct: 299 CYEFHIDIDTIRKNMKEYHNLH---RRMETIGFYKGCEVKTD-YGHHPTEIKNTLKALDE 354

Query: 363 ISPHGEGRRIAVL-------GDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLAL 414
              H +G+   V          M  + + + +F+  D   V  +Y     + S  H   L
Sbjct: 355 ---HKKGKFYCVFQPHTYSRTKML-LDDFANAFYDCDEVVVTEIYAAREKFDSSIHSTDL 410

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            + L    ++  Y +T +    +I+S + D D+V+   
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYIRSKVCDNDLVLTTG 448


>gi|300811426|ref|ZP_07091921.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497584|gb|EFK32611.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 439

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 145/418 (34%), Gaps = 54/418 (12%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTT 121
           KG+G V+V      +  S +I V   ++   A             + T I + GS GKT+
Sbjct: 63  KGSGQVIVK---GNAFKSDNIEVVACEEKGVAWQSYPDTVEEIVQQYTSIGVAGSHGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  +L   L     T   IG           + +   D  F ++E       E R     
Sbjct: 120 TTGLLATVLGEAAPTSFLIGDG---------MGKGVKDSRFFVYEA-----DEYRRHFLA 165

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P   ++T +   H   F   ++ ASA     +  +K   +F+  DD   + ++ K+  
Sbjct: 166 YHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKG--LFVWGDDERLQKIQPKTAK 223

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
                 Y++G   + DFQ     + +E +   V+  G+ + E   H  G H   N    +
Sbjct: 224 K-----YTYGLKDSDDFQAFDVVKTTEGAKFHVRANGEDLGEFSIHLFGDHNVMNATAVI 278

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I      D+D   K        +  G + R +      T++ + Y  +P  ++A I   
Sbjct: 279 AIAFTEGIDLDVVRKG-----LVKYTGAKRRFSEKDFGDTVVIDDYAHHPTELRATIQAA 333

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---SGFHVLALKDA 417
            Q     + + + +          ++ F  +  E+L    +   +L    G    A  D 
Sbjct: 334 RQ--KFPDRKLVTIF--QPHTYSRTKEFEEEYVEILK--GVDKAFLTPIYGSAREAAGDI 387

Query: 418 LPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-NLLLEE 467
               I        V   + +  L  +       GD +V   +     Y +    +LE+
Sbjct: 388 KSEDITSQIPGAEVIDFDNLKDLLAY------KGDCIVFMGAGDIPKYEVAFEEMLEK 439


>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
 gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
          Length = 445

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 122/346 (35%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADMWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +   C +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHKADFWLERETGCLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAIALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMIDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
           sativus]
          Length = 871

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 141/401 (35%), Gaps = 42/401 (10%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAV 61
           +  +LL   +   I         + GI  DSR ++  + F        DG D   +  A 
Sbjct: 342 SLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCC-----DGGDDSVLSEAD 396

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
           ++GA  VV + ++          +  V+D    L  LA            +I +TG+ GK
Sbjct: 397 KRGAVAVVASKEIDIEDTLGCRALVIVEDTEAVLAALASSFYRHPSKDMAVIGVTGTNGK 456

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVD-VDF 162
           TTT  ++     ++        S + ++                 V   +A+M  +  + 
Sbjct: 457 TTTTYLIKSLYEAMGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHNGTEA 516

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKT 220
            + E     L   +     V   IAV T +A          EE   A+A++F  +   + 
Sbjct: 517 LVMEASPQELASGK--CDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDPER 574

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +N DD                 + +F  ++  AD    K++    ++ + +     
Sbjct: 575 HRKVVNIDDPNAAFFVQ--QGNPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQG 632

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+    +G H   N+L  + +   + A ++  ++ +       G   R      +  F
Sbjct: 633 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPG---RCELIDEEQAF 689

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            +I + +   P  +   +  + ++ P    R I V+G   E
Sbjct: 690 GVIVD-HANTPDGLSRLLDSVRELKP---RRIITVIGCAGE 726


>gi|154483291|ref|ZP_02025739.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
 gi|149735801|gb|EDM51687.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
          Length = 460

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 150/412 (36%), Gaps = 42/412 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   + +   ++IP+    + LG + K    A        I ++G+ GKTTT  M
Sbjct: 77  AAVKADNPELVAATEMNIPLLTRAEFLGQIMKNYHTA--------IGVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  +           + +  I V   +  +  +   G  +  ++   E         P 
Sbjct: 129 LSQIM--------LEANTDPTILVGGIMPAINGNTRIGHSDNMITEACEYTNSFLSFAPT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  +A  HL  F  +++I  +     E + + G + +N D    +            
Sbjct: 181 IGIILNVAADHLDFFKDLDDIRHSFRRYAELIPEGGALVINSDIDNLDYFTEGLKC---- 236

Query: 246 TIYSFGKS-KNADFQLRKWKQCS-EQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGI 302
            + + G   + + +           +   ++ + G++    V    G H   N L ++  
Sbjct: 237 NVITVGSDPEKSMYSAANITYDEFARGSYDLVVNGETKTHIVLKVTGEHNIYNSLASIAA 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D ++ I   +      G  +R++     G  T+ID+ Y  +P  ++A I     
Sbjct: 297 AHFMGIDDNSII---AGLQQYGGTDRRFQYKGKLGDITVIDD-YAHHPDEIRATIKTAKH 352

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R  A+L + C+   LS++  + LA++ +      + +S   V  
Sbjct: 353 YPHKKMWVVFQPHTYTRTKALLPEFCK--ALSEADAVVLADIYAAREKDTLGISSKDV-- 408

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +K         +Y  +   +  F+  +   GD+++   +      ++   LL
Sbjct: 409 MKGIKKLGTEAYYFPSFSEIENFLLENCSTGDLLITMGAGDV--VKIGEHLL 458


>gi|303258235|ref|ZP_07344242.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
 gi|302858988|gb|EFL82072.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
          Length = 462

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 157/429 (36%), Gaps = 44/429 (10%)

Query: 46  IKGPHYDGHDFILHAVQKGAG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           I    + GHD   +    G       V  +   V    + +IPV     +L  L +L   
Sbjct: 49  IGAEIFIGHD-ASNVGDAGVVVTSTAVHADNPEVVEAKNRNIPVVPRAIMLAELMRLRQG 107

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IA+ G+ GKTTT  ++T  L                IG  L  A     + 
Sbjct: 108 ---------IAVAGTHGKTTTTSLITSILERGGLDP------TFVIGGRLNAAGSNAKLG 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
            G++ +  +   +  FL   + P I+V+T I   H+  +   +  +  A  +  + L   
Sbjct: 153 QGLYIVAEADESDASFLN--LSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFY 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +  +      +  K      K I ++G  ++A  +    +    Q    +   G +
Sbjct: 211 GRAVMCIESENVRAILPKI----TKPILTYGFREDAQIRAENIRADGTQMHFTLVRDGAA 266

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
             E+  +  G H   N L  +G+   L   ++   +AL+ F     R   +      +G 
Sbjct: 267 PEEITVNLPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGE 326

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  M A I+      P    RR+ V             F  DL  VLS 
Sbjct: 327 KFLVVDDYGHHPTEMAATIAAARGAYPD---RRLLVAFQPHRYTRTRDCF-EDLVRVLSN 382

Query: 399 YNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +      V+ +G   +   D+  L RSI +       ++   D +   + +++ +GDVV
Sbjct: 383 ADALVLEAVYPAGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVMELVNNNVKEGDVV 442

Query: 448 VVKSSNSCG 456
           +V  + + G
Sbjct: 443 LVMGAGNIG 451


>gi|222149135|ref|YP_002550092.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium vitis S4]
 gi|254763734|sp|B9JY53|MURC_AGRVS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221736120|gb|ACM37083.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium vitis S4]
          Length = 471

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 160/417 (38%), Gaps = 57/417 (13%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  S   L       +PV    ++L  L +   A         IAI G+ G
Sbjct: 67  AEVVVVSTAIKKSNPELVAAREKLLPVVRRAEMLAELMRFRNA---------IAIGGTHG 117

Query: 119 KTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTTT  M+   L +  +  T    G  N +     T ARM    ++ + E   S    ++
Sbjct: 118 KTTTTSMVAALLEAGQLDPTVINGGIINAY----GTNARMGEG-EWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +AV+T I P HL ++   + + +A  +  E +   G   +  D    + L 
Sbjct: 173 -----LPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIG 289
            +      + + ++G++  AD +    +    +S  +V+++ +         ++     G
Sbjct: 228 GRIE---DRKVVTYGENPQADVRFFNVRNEGTKSIFDVEIRRRRTGRVFSFKDLTLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    + + + L    +   K LS F   +   +R+          + D+ Y  +
Sbjct: 285 RHNISNACAAIAVANRLDISEEAIRKGLSTFGGVK---RRFTLTGTWNGVQVFDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFHIDLAEVLSL-YN 400
           P  +KA +    +     +GR IAV        L  + E  + +  F+   + +LS  Y 
Sbjct: 341 PVEIKAVLKAARE---SCKGRIIAVHQPHRFSRLSSLFE--DFANCFNDADSILLSPVYA 395

Query: 401 ISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                + G    AL   +    H  V Y  + D L   I +    GD VV+  + + 
Sbjct: 396 AGEDPIEGIDSEALVSRIRSGGHRDVRYLASPDQLAGIISTIAQPGDFVVLLGAGNI 452


>gi|15889377|ref|NP_355058.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium tumefaciens
           str. C58]
 gi|23821880|sp|Q8UDM9|MURC_AGRT5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15157227|gb|AAK87843.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium tumefaciens str.
           C58]
          Length = 471

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 146/406 (35%), Gaps = 45/406 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +P+    ++L  L +   A         IAI G+ GKTTT  M+
Sbjct: 75  AIKKNNPELIAAREKHLPIVRRAEMLAELMRFRNA---------IAIGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +        G+ +  +     +     +   G  E  +    E       +   +
Sbjct: 126 ATLLEA--------GNLDPTVINGGIINAYGTNARMGEGEWMVVEADESDGTFLKLPADV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +      + 
Sbjct: 178 AVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIE---DRK 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLMT 299
           + ++G++  AD +    +    +S  +V+++ +         ++V    G H   N    
Sbjct: 235 VITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFKDLVLPMPGRHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + + L        K L+ F   +   +R+          + D+ Y  +P  +KA ++ 
Sbjct: 295 IAVANRLGISEADIKKGLASFAGVK---RRFTLTGEANGVQVFDD-YGHHPVEIKAVLAA 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSF----H----IDLAEVLSLYNISHVWLSGFHV 411
             +     +GR IAV         LS  F    H     D   +  +Y      + G   
Sbjct: 351 AREA---CKGRIIAV-HQPHRYSRLSSLFDDFAHCFNDADTILLAPVYAAGEDPIEGASS 406

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            AL  A+  + H    + E  + L   + +    GD VV+  + + 
Sbjct: 407 EALVSAIKAAGHRDARFLEKREDLASQVAAIANPGDFVVLLGAGNI 452


>gi|212638300|ref|YP_002314820.1| UDP-N-acetylmuramate--L-alanine ligase [Anoxybacillus flavithermus
           WK1]
 gi|226711857|sp|B7GK78|MURC_ANOFW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212559780|gb|ACJ32835.1| UDP-N-acetyl muramate-alanine ligase [Anoxybacillus flavithermus
           WK1]
          Length = 433

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 83/408 (20%), Positives = 145/408 (35%), Gaps = 49/408 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   L +PV      LG   +         K T IA+TG+ GKT+T  +
Sbjct: 68  NAFPDTHEEIVAARELGVPVIRYHQFLGDFLQ---------KFTSIAVTGAHGKTSTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   +   K T   IG  +          +     ++ +FE       E R       P 
Sbjct: 119 LAHVMQGAKPTSYLIGDGSG---------KGREGSEYFVFEA-----CEYRRHFLAYSPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   F+ IE++ SA  ++   ++K   I    DD + + ++AK       
Sbjct: 165 YAIMTNIDFDHPDYFANIEDVFSAFQQMAWQVKKG--IIACGDDEYLQKIQAKV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            +  +G  ++ DFQ R   +  E +  +V ++       H    G H   N L  + +  
Sbjct: 217 PVVFYGFGEDNDFQARNIVKTPEGTSFDVFVRHTFFASFHIPRYGDHNVLNALAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               DV+   + L  F   + R          G   LID+ Y  +P  ++A I    Q  
Sbjct: 277 YEGIDVNIIQERLKTFPGVKRRFHEKML----GSQVLIDD-YAHHPTEIRATIEAARQ-- 329

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            + E + +A+          +Q+F  + AE LSL +  ++          +  L      
Sbjct: 330 KYPERQIVAIF--QPHTYTRTQTFLDEFAESLSLADAVYLCDIFSSAREHQGKLSIEDLR 387

Query: 425 HYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFPA 470
              E    L       L   D  V++   +        I    E++  
Sbjct: 388 AKIEGAKLLDEEQVDVLKQHDNAVLIFMGAGD------IQKFQEKYEQ 429


>gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp.
           PRwf-1]
 gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. PRwf-1]
          Length = 569

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 79/509 (15%), Positives = 162/509 (31%), Gaps = 93/509 (18%)

Query: 24  QGFVNGISIDSRSIAPQEA------FFAIKGPHY---DGHDFILHAVQKGAGLVVVNTDM 74
               +   +DSR +A ++A      F  +K           ++  A+ + A ++      
Sbjct: 38  DVPFSKFVLDSRQLAKRDASSAPAAFVLLKSQTQPLQKSQQYVQTALPQAAFIISEIDPQ 97

Query: 75  V--------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---------------ATII 111
                     S  S   P+  V D+   L  L   + L                    +I
Sbjct: 98  QLGLEGLDKPSDSSPDCPILFVPDIRDVLGTLIQLSLLSDDALSQIGDAQSLAQTLPQVI 157

Query: 112 AITGSVGKTTTKEMLTIA--LSSIKK-----TYACIGS------------YNNHIGVPLT 152
           A+TG+ GKTT  +++      S + +          G+              + + V   
Sbjct: 158 AVTGTNGKTTISQLMAQLCQFSEVAQLQNSAVMGTAGNGRLDSLVQASHTTGDALAVQGF 217

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           L +M    VD    E     L + R     V   +A+ T ++  HL     +++ A AKA
Sbjct: 218 LRKMGDEGVDLLALEASSHGLDQQRL--QGVPVTVALYTNLSRDHLDYHPDMQDYAQAKA 275

Query: 212 EIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS----------KNADFQ 259
            +F+     +     +N DD F  L+   +   G+ +++ +             +NA F 
Sbjct: 276 RLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGV-SVWLYSLQGDFIEKSDLQRNAYFI 334

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +  +   +   +E       + +    +G     N+L  +     L  + ++    +  
Sbjct: 335 AKTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPALVKQ 394

Query: 320 FHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            H   GR +R     + +  +    ++D  Y   P ++   ++ L     H  G   A+ 
Sbjct: 395 LHGASGRMQRVSLDEQGSQPEQGVFIVD--YAHTPDALTQVLTSLKS---HCSGNLWAIF 449

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHV-- 424
           G   +  +  +           L     V L+  +  +         ++  +    H   
Sbjct: 450 GCGGDRDKGKRPLMAQAG----LATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKT 505

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +        D+VV+  K 
Sbjct: 506 TVIADRKQAIEYAVEHAAADDIVVIAGKG 534


>gi|145588356|ref|YP_001154953.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189029017|sp|A4SV75|MURC_POLSQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145046762|gb|ABP33389.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 478

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 149/420 (35%), Gaps = 58/420 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  N   V +  +  IPV     +LG L +L            IAI G+ GKTTT  ++
Sbjct: 73  AVAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQG---------IAIAGTHGKTTTTSLV 123

Query: 127 TIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L+   +  T+   G  N+        AR+    DF + E   S    ++     + P
Sbjct: 124 ASVLAEGDLDPTFVIGGKLNS----AGANARLGRG-DFIVVEADESDASFLQ-----LFP 173

Query: 185 HIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            + V+T I   H+      +  +  A  +  + +   G   L  DD+    +        
Sbjct: 174 AMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCIDDANVRDII----PFV 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--------KSMEVVHHGIGYHMAQN 295
            + I  +G S++AD +    +    +    V+ +           + V  +  G H  +N
Sbjct: 230 SQPILRYGLSEDADIRASNVRADGTRMHFTVERRTVRRHGNKPGPLNVTLNLPGLHNVRN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMK 354
            L  +GI + L       IKALS F     R +RY    L  G    + + Y  +P  M 
Sbjct: 290 ALAAIGIATELGVGDQAIIKALSEFSGVGRRFQRYGDIPLASGGKFTLIDDYGHHPVEMA 349

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV 411
           A ++      P     R  VL         ++    +  +VL  ++    + V+ +G   
Sbjct: 350 ATLAAARGAYPD----RRLVLAFQPHRFTRTRDCFGEFVQVLKNFDALVLTEVYPAGEAK 405

Query: 412 LALKDA--LPRSIHVHYSETMD--------------GLFLFIQSSLVDGDVVVVKSSNSC 455
           +   D   L ++  V    +                 +   +   L DGDV++   + S 
Sbjct: 406 IPGADGKSLMKAALVDDKTSKALLNSAAVAFASSVAEMPEKLGQVLKDGDVLITMGAGSI 465


>gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
 gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
          Length = 481

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 182/496 (36%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH          + I  DSR       FF +KG  +   +F+L A++ G  
Sbjct: 17  FREIID--QGHYHYNFNDVTFDSICYDSRKAKDNSLFF-VKGAAFKK-EFLLSAIEHGLS 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEQDY-----EVDIPVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSI--------------KKT-YACIGSYNNHIGVPLTLARM-PVDVDFGIFELG 168
                L+                 KT +    +    I +   +A+         I E+ 
Sbjct: 128 FAYNILNQKHYPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVDNGRTHLIMEVS 187

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  R   + +   + V   I+P H+        E+    K  +   ++ +  + +N
Sbjct: 188 SQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---MKNSRAVVIN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVV 284
            D  +F +LK +             +++  DF   +     E S        GK + +  
Sbjct: 243 SDMDYFSVLKEQV------------ENQEHDFYGSQSDNQIENSKAFSFSATGKLVGDYD 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG+   +N +        L A ++   K ++        G+        G    ID 
Sbjct: 291 IQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAT---TRVPGRMEVLTQKNGAKVFID- 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+K  ISV   +  H  G+   VLG     G   +S   D   +L  +    V
Sbjct: 347 -YAHNGDSLKKLISV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLDQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV--KSSN 453
           +L+         +A+ D +   IH H  E +      I++++     + D V++  K ++
Sbjct: 400 FLTADDPNYEDPMAIADEISSFIH-HPVEKIADREQAIKAAMSVTSQELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y++IN + E++P
Sbjct: 459 C---YQIINGIKEDYP 471


>gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
 gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
          Length = 246

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGHD++  A+  
Sbjct: 4   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDN 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 63  GAVASLWKKSYGTPPKG--VPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G
Sbjct: 121 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 170


>gi|323339597|ref|ZP_08079871.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
 gi|323092992|gb|EFZ35590.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
          Length = 467

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 135/371 (36%), Gaps = 52/371 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T I + G+ GKT+T  +L+  LS +  T   IG             +   D  F +FE 
Sbjct: 128 TTSIGVAGAHGKTSTTGLLSHVLSGVSPTSYLIGDG---------TGKGVPDARFFVFEA 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E R       P   ++T I   H   F+GIE++  A  E+ +  +K   +F+  
Sbjct: 179 -----DEYRRHFAGYHPDYTIMTNIDFDHPDYFTGIEDVCDAFQELADHTKK--ALFVWG 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + +K          +Y +G  +N D +    K+ ++ S  +V L  + +      
Sbjct: 232 EDKHLQNIKVDI------PVYRYGTEENDDVRAENIKRTTKGSSFDVYLHDEFLGTFDIP 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +  +   D +   + L  F   + R    + A       +I + Y
Sbjct: 286 LFGKHNVLNSLAVIAVSHLEKIDAEEVKRELLTFKGVKRRFSEKKVADM-----VIIDDY 340

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P+ + A I    Q  P  + + IAV          + +   D A+ L L     V+L
Sbjct: 341 AHHPSEIAATIDAARQQYP--KKKIIAVF--QPHTFSRTVALMDDFAKSLDL--ADKVYL 394

Query: 407 S----------GF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +          G      L + + +   V   + M  L  F        DVV+   +   
Sbjct: 395 TEIFSSIREQNGEVSAKDLGEKISKGGEVLSLDNMSPLLDF------HDDVVIFMGAGDI 448

Query: 456 -GFYRLINLLL 465
             + +    LL
Sbjct: 449 PKYEQAYEELL 459


>gi|268610569|ref|ZP_06144296.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 160/450 (35%), Gaps = 61/450 (13%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F   +  + +G D I+H        ++ +   + +  +  +PV    D+LG +      
Sbjct: 57  VFIGQRAENIEGADLIVHT-----AAIMADNPELIAAKASGVPVLERADLLGIVTSWYSN 111

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDV 160
           A        I ++G+ GKT+T  M+T  L +      A IG     IG      +     
Sbjct: 112 A--------ICVSGTHGKTSTTSMITQILYTAGVDLSAYIGGKLPCIGGSGIAGK----S 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E        ++F      P I+VI  I   HL  F  +E I  +  +  E   K 
Sbjct: 160 DILVCESCEFEDHFLKFF-----PDISVILNIDADHLDYFGTLENIIKSFHKFNENTSK- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
             I +N  D            +  K I +FGK  + D+     K  +   +  +   +G+
Sbjct: 214 -CIIINGSDENS---MKSLEGITGKEIITFGKDSSCDYYPENVKHENGLLTTYDAMYKGE 269

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +  H  G H   N L  +     + A+ D   K L  F    G  +R+     +  
Sbjct: 270 KLGTITLHVAGIHNVLNSLAAVAAARYVGAEFDAIQKGLEEF---RGAKRRFEKLGFEKG 326

Query: 339 FTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFH 389
            T++D+ Y  +P  ++A ++   ++          P    R   +L D   +  L    H
Sbjct: 327 ITVVDD-YAHHPTELEATLNAAMEMNFNHVWAVFQPFTFSRTKLLLDDFARV--LQIPDH 383

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDA------LPRSIHVHYSE-----TMDGLFLFIQ 438
             L +++           G     L +        P+     +++         +  +I 
Sbjct: 384 AVLTDIMGSR---EKNTYGIFTRHLAEKIPDCVWFPQDEQAEWTDERKYANFGQICDYIC 440

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               +GD+V+         Y++  ++L++ 
Sbjct: 441 EHAQEGDLVITLGCGDA--YKIAKMILKKL 468


>gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
 gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
          Length = 470

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 122/343 (35%), Gaps = 31/343 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATI 110
           G DF   A   GA   + +      + +   PV  V D  G +  LA             
Sbjct: 14  GADFAAQAASLGAVAALTDPAGAERVLAAGRPVLVVGDPRGRMGALAARIYGNPGDGLLQ 73

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELG 168
           I ITG+ GKTTT  ++   L +   +   IG+    IG     +    P   D       
Sbjct: 74  IGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAV 133

Query: 169 MSHLGEIRF------------LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           M   G                    V   +AV   ++P H+   SG+E+   AKA++F  
Sbjct: 134 MRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTR 193

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEV 274
             ++    +N DD++   L A++       I +F      +AD++    +  +  S   V
Sbjct: 194 -ARSRRGVVNRDDAYGRRLVAEAEV----PIVTFSAEGHPDADWRAEDVEIRATDSVFTV 248

Query: 275 Q-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G          G     N L  +  ++    D   A + +       GR +R    
Sbjct: 249 VGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPGRLERV--- 305

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            ++G   L    Y     ++++ +  L +++   EGR   VLG
Sbjct: 306 -DEGQPYLAVVDYAHKTDAVESVLRSLRRVT---EGRVHVVLG 344


>gi|209550173|ref|YP_002282090.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535929|gb|ACI55864.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 471

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 160/432 (37%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +PV    ++L  L +   A
Sbjct: 54  EVFVGHR----AENLGDAEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFRNA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI G+ GKTTT  ++   L +       I      I    T ARM    +
Sbjct: 110 ---------IAIGGTHGKTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-E 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   +AVIT I P HL ++   + + +A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + L  +      + I ++G++  AD + +  +    +S  +V+++ +  
Sbjct: 213 FGVMCLDHPEVQSLVGRIE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRT 269

Query: 282 EVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             V           G H   N    + + + L        K L+ F   +   +R+    
Sbjct: 270 GQVIELKGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVK---RRFTLTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
                 + D+ Y  +P  +KA   VL       +GR IAV        L  + E  E + 
Sbjct: 327 EWNGVQIFDD-YGHHPVEIKA---VLRAAREACKGRIIAVHQPHRHSRLASLFE--EFAA 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   +  +Y      ++G   ++L   +    H    +  + + L   +      
Sbjct: 381 CFNDADSIFLAPVYAAGEDPIAGIDSVSLVSRIKSGGHRDARFLNSAELLPQMVAEVAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV+  + S 
Sbjct: 441 GDFVVLLGAGSI 452


>gi|145595727|ref|YP_001160024.1| UDP-N-acetylmuramate--alanine ligase [Salinispora tropica CNB-440]
 gi|189082497|sp|A4X9R5|MURC_SALTO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145305064|gb|ABP55646.1| UDP-N-acetylmuramate--L-alanine ligase [Salinispora tropica
           CNB-440]
          Length = 514

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 147/392 (37%), Gaps = 28/392 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A   +    +A+ G+ GKTTT  M+T+ L             +
Sbjct: 97  VEARRRGLRVLHRSEALATAMTGRRTVAVAGTHGKTTTTSMVTMVLQQAG--------VD 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +   ++ +      G  +  +    E      + RP +++IT I   HL+ +  + 
Sbjct: 149 PSFVIGGEISEVGSGAHHGTGDYFVVEADESDRSFLIYRPFVSIITNIEADHLNTYGDLA 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            + +A A+     +  G I    DD     L     A G + +Y++G S +AD +L +  
Sbjct: 209 NLEAAFADFARLTDPDGFIITCADDVGGRRLAETLRAEG-RRVYTYGISTDADLRLTEMA 267

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             +       ++ G+S+ E      G HM  N    +    +L   ++ A  AL+ F   
Sbjct: 268 SSTRGIRYLAEIDGRSLGEFRLPVPGRHMGLNSASAVLAEYLLDLPLEAAQSALAAFPGV 327

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R   A +     L+ + Y  +P  +  A+  L +++   +G  I V      +  
Sbjct: 328 RRRFERKGVADD----VLVYDEYAYHPTPIALALRTLREVAG--DGGLIVVF-QPYRLYR 380

Query: 384 LSQ--------SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLF 434
                          D   +L ++    +   G    AL +A+P  +    + ++ D   
Sbjct: 381 TRDLQAEIAEALAIADELVLLEVFGPGELREPGEGSAALIEAVPLPVDRKVFVDSWDAAP 440

Query: 435 LFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
           + +      GDVVV   +        +L++ L
Sbjct: 441 VEVARRAKPGDVVVTMGAPPSSLMGDQLLDAL 472


>gi|322807873|emb|CBZ05448.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum H04402
           065]
          Length = 458

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 149/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  +++I +A ++  + + K G +    +D   + +  ++      
Sbjct: 181 IGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEASC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKDKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +    I LA++ +        +S      L
Sbjct: 352 PHNKLFCVFQPHTYSRTLTLFDDFTKCFDNADE--IILADIYAAREKDTGIIS---SDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  +GD+++   +     Y++  +
Sbjct: 407 GDKLRDRGLKCTNFHKFDDIKNYLIENAKNGDLILTVGAGDI--YKVGEM 454


>gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis CI]
 gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 250

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 8   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDN 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 67  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G
Sbjct: 125 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKG 174


>gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 481

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 93/497 (18%), Positives = 175/497 (35%), Gaps = 74/497 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L  + G     +     + IS DSR ++    FF +KG ++   +++  A+  G 
Sbjct: 16  NFREVL--VNGEYYYHLEGTRFDAISYDSRKVSASTLFF-VKGANFKK-EYLEQAISNGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
           G  V   D       + IP   V+D+  A++   +        +  ++A TG+ GKTT  
Sbjct: 72  GFYVSEKDY-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPV-----DVDFGIFE 166
                 L       A + + N  +               L L  M       D    I E
Sbjct: 127 YFAYHILEQS-HRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAQAVANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +        R   + +   + V   I+P H+        E+    K  +   ++ +  + 
Sbjct: 186 VSSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---MKNSQAVV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SME 282
           +N D   F++L  +              +++ DF   + +   E S        GK + +
Sbjct: 241 INSDMDHFQVLADQVA------------NQDHDFYGSQSENQIETSKAFSFSATGKLAGD 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG+   +N +        L A ++   K ++        G+        G    I
Sbjct: 289 YDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAK---TRVPGRMEVLTQKNGAKVFI 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y  N  S+K  +SV   +  H  G    VLG     G   +S   D   +L  +   
Sbjct: 346 D--YAHNGDSLKKLLSV---VETHQTGTISLVLGS---TGNKGESRRKDFGLLLEDHPEI 397

Query: 403 HVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KSS 452
            V+L+         LA+ + +    +  V      +       ++     D V++  K +
Sbjct: 398 QVFLTADDPNYEDPLAIAEEISSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAGKGA 457

Query: 453 NSCGFYRLINLLLEEFP 469
           +    Y+++N + EE+P
Sbjct: 458 DC---YQIVNGVKEEYP 471


>gi|319941790|ref|ZP_08016112.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
 gi|319804723|gb|EFW01590.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
          Length = 465

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 89/418 (21%), Positives = 148/418 (35%), Gaps = 49/418 (11%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  V+V      +   V +   L IPV     +L  L +L            IAI G+
Sbjct: 63  RGADAVIVSSAVKADNPEVTAARELDIPVVPRAVMLAELMRLRRG---------IAIAGA 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT         S+  +    G  +    +   L     +   G  E  ++   E  
Sbjct: 114 HGKTTTT--------SLTASLLAAGGLDPTFVIGGKLNSAGANARLGTGEFLVAEADESD 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P IA +T I   H+  +    E++ SA  +    L   G   L  DD     +
Sbjct: 166 ASFLNLTPVIAAVTNIDEDHMDTYGHDFEKLKSAFVDFLGRLPFYGVAVLCMDDDNVRSI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQ 294
           + +      K +  +G S +A  +         +    V       + VV +  G H  +
Sbjct: 226 RPRV----TKPVIGYGLSHDATVRAIDVTADGTRMRFTVLRPDHPPLPVVLNLPGVHNVR 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFFTLIDESYN 347
           N L  + I ++     +   + L+ F     R  ++     Q       G FTLID+ Y 
Sbjct: 282 NALAAVAIATLAGVKDEDIKRGLAEFKGVGRRFAQWGDIPIQDADGRITGTFTLIDD-YG 340

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--IDLAE------VLSLY 399
            +P  M A    L+ +     GRRI V             F+  + + E      + ++Y
Sbjct: 341 HHPHEMAA---TLAAVRGAWPGRRIVVAFQPHRYTRTRDCFNDFVKVLEDVDGVVLANVY 397

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                 + G     L +A+  S         +D +   ++S +  GDVVV   + S G
Sbjct: 398 PAGEAPIPGADSHHLAEAIKASGRSEPVVVDVDQVPDAVRSLVEPGDVVVTMGAGSIG 455


>gi|257869275|ref|ZP_05648928.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803439|gb|EEV32261.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
          Length = 444

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 134/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            +     T IA+TGS GKT+T  +L+  LS ++ T   IG    H               
Sbjct: 99  GKFIQPYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSFLIGDGTGHGDPNA---------- 148

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               E       E R       P  A++T I   H   +  I+++ SA   + + ++K  
Sbjct: 149 ----EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYQSIDDVFSAFQSMAKQVKKGI 204

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             F   DD++   L+A         IY +G + + D Q +  ++ +  S  +V +  +++
Sbjct: 205 FAF--GDDAYLRKLEADV------PIYYYGVNDDDDVQAKNIQRTTTGSEFDVYIHNENI 256

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              V    G H   N L  + +      D+    + +  F   + R    + A       
Sbjct: 257 GHFVLPAFGQHNINNALGVIAVAYKEGLDMTEVAEEMLSFPGVKRRFSEKKVADMT---- 312

Query: 341 LIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            I + Y  +PA ++A I    Q            PH   R IA++ +  E  +L+ S + 
Sbjct: 313 -IVDDYAHHPAEIRATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDLADSVY- 370

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            L ++      S        +  L + + +   V   E +  L            V++  
Sbjct: 371 -LCDIFGSARESR---GDVKIEDLGNKIQKGGQVIKEENVSPLLDH------QDAVIIFM 420

Query: 451 SSNSC-GFYRLINLLL 465
            +     F      LL
Sbjct: 421 GAGDVQKFESAYEKLL 436


>gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae JJA]
 gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae JJA]
          Length = 481

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             K ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------KDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|229032342|ref|ZP_04188315.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
 gi|228729122|gb|EEL80125.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
          Length = 436

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 164/464 (35%), Gaps = 77/464 (16%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   FS I ++ +A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFSDINDVFNAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               Q   H E   +AV          ++ F  + AE LS      V+L      A ++ 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLCDIFGSARENK 378

Query: 418 LPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              +I      +  +E +      +     +G V++   +    
Sbjct: 379 GELTIEDLQKRIDVAELITDTTTDVLKKHKNG-VLIFMGAGDIQ 421


>gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
 gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
          Length = 243

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGHD++  A+  
Sbjct: 1   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHDYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYGTPPKG--VPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 118 DIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 167


>gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 481

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 93/496 (18%), Positives = 180/496 (36%), Gaps = 72/496 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++++   GH          + IS DSR++     FF +KG ++   +F+  AV+ G 
Sbjct: 16  NFREIIK--DGHYFFHDGGLTFDKISYDSRNVTNTTLFF-VKGENFKK-EFLEGAVESGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT+ 
Sbjct: 72  KFYISESDF-----EVGIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAFTGTKGKTTSA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPV-----DVDFGIFE 166
                 LS      A + + N  +               L L  M       D    I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGKNFFKSSLTTPESLDLFEMMAQAVANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +    +V   I+P H+        E+    K  + E    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRLLMEN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +  ++       +G++ +            +      +  GK + + 
Sbjct: 241 VNSGMDHFQIVKEQVSSIEHD---FYGENSSNTI--------IDSQAFSFEASGKLAGKY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N L        L A +    K +++       G+        G    +D
Sbjct: 290 DIQLIGRFNQENALAAGLACLRLGASLTDIQKGIAL---TRVPGRMEVLTQKNGAKVFVD 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+   +SV+ +   H +G+ I VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLTKLLSVVQE---HQKGQTILVLGA---TGNKGESRRKDFGILLNKHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KSSN 453
           V L+         + +   +    S  V              S    +GD V++  K ++
Sbjct: 399 VILTADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
           +   Y+++N + E +P
Sbjct: 459 A---YQIVNGIKEAYP 471


>gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
 gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
          Length = 584

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/502 (16%), Positives = 165/502 (32%), Gaps = 89/502 (17%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYD---GHDFILHAVQKGA---------GLVVVN 71
                   +DSR +   EAF  +K    +     D++  A    A          L+   
Sbjct: 68  NIPFQQFCLDSRQLIRNEAFALLKSHTPNCQKSRDYLYQAANNAAFILSEIDPLALIATG 127

Query: 72  TDMVAS----------------IGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATII 111
                +                + +L  PV  V ++   L  L  A     +     T++
Sbjct: 128 NIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSLIQARLQYQQRVTLPTVV 187

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGS---------------YNNHIGVPLTLARM 156
           A+TG+ GKTT  +++         + A +G+                 + + V   L +M
Sbjct: 188 AVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQASHTTGDTLAVQQFLHQM 247

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  +    E     L + R     +   +A+ T ++  HL   + + E A+AKA++F+
Sbjct: 248 GKEGAELLALEASSHGLDQQRL--QGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFD 305

Query: 216 --GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSW 271
                      +N DD + +++   +HA  +K ++++    SK A F             
Sbjct: 306 KAHFPDLTHAIINIDDEYAQIMLDTAHASHLK-VWTYSLDPSKTATFVAADITPSLHGVE 364

Query: 272 MEVQLQGKS-----MEVVHHGIGYHMA----QNMLMTLGIVSILTADVDTAIKALSVFHP 322
           + +           +++V   +G          +   + +      D++  I  +     
Sbjct: 365 ISLCTDFGDGKVNHLDIVSPLLGRFNVANLLAAIAAAVALGHKTGIDIERIIAVIPQLQG 424

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR +R     N G F +    Y   P ++     VL+ +  H +G+  AV G   +  
Sbjct: 425 AVGRMQR--VPSNDGCFIV---DYAHTPDALS---QVLASLKTHCKGQLWAVFGCGGDRD 476

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD-----ALPRSIHVHYSETMD 431
              +           L     V L+  +         L+D     +  +    H      
Sbjct: 477 TGKRPLMAQAG----LAGADKVILTADNPRTEDPNVILQDMQAGMSTEQYQRTHIESARQ 532

Query: 432 GLFLFIQSSLVDGDVVVV--KS 451
               +  S     D+VV+  K 
Sbjct: 533 TAIEYAVSQAAADDIVVIAGKG 554


>gi|160896918|ref|YP_001562500.1| UDP-N-acetylmuramate--L-alanine ligase [Delftia acidovorans SPH-1]
 gi|229486487|sp|A9BUK7|MURC_DELAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160362502|gb|ABX34115.1| UDP-N-acetylmuramate--alanine ligase [Delftia acidovorans SPH-1]
          Length = 477

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 159/441 (36%), Gaps = 55/441 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A  +GA  VV +T + +    +       IPV     +L  L +         
Sbjct: 56  GH---AAAHIEGADAVVTSTAVQSDNPEVLAARERKIPVVPRALMLAELMRFKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               IAI G+ GKTTT  ++T  L+         IG   N  G    L +     D+ + 
Sbjct: 108 ----IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIGGKLNSAGANAKLGQG----DYIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P +AV+T I   H+  +      +  A  +    +   G   
Sbjct: 160 EADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKGAFVDFLHRMPFYGRAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           +  D      +  +      + + ++G +++A  +    +  +      V+         
Sbjct: 215 VCVDSPAVREILPQVA----RPVTTYGFAEDAQVRALNVRAEAGSMHFTVRRSNGQSYPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           ++VV    G H   N L  + +   L    D  ++A   F     R +RY   A   G  
Sbjct: 271 LDVVLSLPGEHNVLNALSAVAVAMELEISDDALLRAFESFKGVGRRFQRYGELAAADGGS 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + + Y  +P  M A +   +       GRR  VL         ++    D  +V+ L 
Sbjct: 331 FTVIDDYGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVKVIGLA 386

Query: 400 NI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +   D   L R++ V       + E +  L   I  +  DGDV++
Sbjct: 387 DAVLLTEVYAAGEAPVVAADGRSLARALRVAGRVEPVFVENVAELPAAIAVNARDGDVLL 446

Query: 449 VKSSNSCGF--YRLINLLLEE 467
              + S G    +L+ +L ++
Sbjct: 447 CMGAGSIGAVPGKLVEMLQKQ 467


>gi|325684170|gb|EGD26356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 439

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 130/374 (34%), Gaps = 50/374 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T I + GS GKT+T  +L   L     T   IG           + +   D  F ++
Sbjct: 104 QQYTSIGVAGSHGKTSTTGLLATVLGEAAPTSFLIGDG---------MGKGVKDSRFFVY 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P   ++T +   H   F   ++ ASA     +  +K   +F+
Sbjct: 155 EA-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKG--LFV 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD   + ++ K+        Y++G   + DFQ     + +E +   V+ QGK + E  
Sbjct: 208 WGDDERLQKIQPKTAKK-----YTYGLKDSDDFQAFDVVKTTEGAKFHVRAQGKDLGEFT 262

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N    + I      D+D   K        +  G + R +      T++ +
Sbjct: 263 IHLFGDHNVMNATAVIAIAFTEGIDLDVVRKG-----LVKYTGAKRRFSEKDFGDTVVID 317

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  ++A I    Q     + + + +          ++ F  +  E+L    +   
Sbjct: 318 DYAHHPTELRATIQAARQ--KFPDRKLVTIF--QPHTYSRTKEFEEEYVEILK--GVDKA 371

Query: 405 WL---SGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +L    G       D     I        V   + +  L  +       GD +V   +  
Sbjct: 372 FLTPIYGSAREVAGDIKSEDITSQIPGAEVIDFDNLKDLLAY------KGDCIVFMGAGD 425

Query: 455 CGFYRLI-NLLLEE 467
              Y +    +LE+
Sbjct: 426 IPKYEVAFEEMLEK 439


>gi|154245140|ref|YP_001416098.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthobacter autotrophicus
           Py2]
 gi|229620439|sp|A7IEJ8|MURC_XANP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154159225|gb|ABS66441.1| UDP-N-acetylmuramate--alanine ligase [Xanthobacter autotrophicus
           Py2]
          Length = 470

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 140/391 (35%), Gaps = 47/391 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV    ++L  L +L            ++I G+ GKTTT  M+   L +       I  
Sbjct: 91  LPVVRRAEMLAELMRLKSC---------VSIAGTHGKTTTTSMVAALLDAGNFDPTVI-- 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            N  I           D ++ + E   S    ++  T      +A++T + P HL +F  
Sbjct: 140 -NGGIINAYGTNARLGDGNWMVVEADESDGTFLKLPTE-----VAIVTNVDPEHLDHFKT 193

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            +++  A     E +   G   +  D    + L  +      + + ++G++  AD +L  
Sbjct: 194 FDKVQDAFKTFVENVPFYGFAVMCIDHPVVQALVGRIE---DRRVITYGENPQADVRLVD 250

Query: 263 WKQCSEQSWMEVQLQGKSMEVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                  +   V  + ++ E VH          G H A N    + +   L    D  I+
Sbjct: 251 VDLKGGITRFGVVFRNRAGETVHEISGLKLPMPGKHNALNATAAIAVAHELKVPDDKIIE 310

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI---------SVLSQISPH 366
           A++ F   +   +R+         T+ D+ Y  +P  + A +          V++ + PH
Sbjct: 311 AIANFGGVK---RRFTRTGEWNGVTVFDD-YGHHPVEIAAVLKAARAASEGQVIAVVQPH 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--V 424
              R  ++  + C     + + H+ +A V   Y      + G     L   L    H  V
Sbjct: 367 RYSRLASLFDEFC--TCFNDADHVVVAPV---YAAGETPIEGADRDHLVQGLIAHGHRSV 421

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              E  + L   +      GD V+   + S 
Sbjct: 422 TALEGPERLAQVVGGLAKPGDYVICLGAGSI 452


>gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV200]
 gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 481

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|168181017|ref|ZP_02615681.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
 gi|182668137|gb|EDT80116.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
          Length = 458

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 149/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  + +I +A ++  + + K G +    +D   + +  +++     
Sbjct: 181 IGAILNIDADHLDYYRDLNDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKCKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +    I LA++ +        +S      L
Sbjct: 352 PHNKLFCVFQPHTYSRTLTLFDDFTKCFDNADE--IILADIYAAREKDTGIIS---SDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRDRGLKCTNFHKFDDIKNYLIENAKDGDLILTVGAGDI--YKVGEM 454


>gi|77462660|ref|YP_352164.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221638517|ref|YP_002524779.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332557542|ref|ZP_08411864.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
 gi|109892733|sp|Q3J4M1|MURC_RHOS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766019|sp|B9KNK0|MURC_RHOSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77387078|gb|ABA78263.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221159298|gb|ACM00278.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332275254|gb|EGJ20569.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
          Length = 470

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 141/411 (34%), Gaps = 48/411 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV    ++L  L ++            IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARLRGLPVVRRAEMLAELMRMRSN---------IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L          G ++  +     +     +   G  E  +    E  
Sbjct: 120 HGKTTTTTMVATLLDK--------GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADESD 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D +  + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFYDFVTNIPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGYH 291
            +   +  + I +FG +  AD +    +  +  +  +V LQ +    V         G H
Sbjct: 232 GR---VTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGTGHVIEGMSLPMPGDH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L    D   +AL+ F       +R+      G  T+ID+ Y  +P 
Sbjct: 289 NVSNALAAVAVARHLGMKKDEIREALAAFGGVN---RRFTKVGEVGGVTIIDD-YGHHPV 344

Query: 352 SMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSF-----HIDLAEVLSLYNISHV 404
            + A +    Q     +GR IAV        +  L   F       D+  +  +Y     
Sbjct: 345 EIAAVLKAARQA---VKGRVIAVHQPHRYSRLHSLFDDFCTCFNEADVVAIAEVYAAGED 401

Query: 405 WLSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKSSN 453
            + G     L   L    H H    +  D L   ++     GD+VV   + 
Sbjct: 402 PIPGAGRDDLVAGLIAHGHRHARAILCEDDLERLVREQARPGDMVVCLGAG 452


>gi|303234875|ref|ZP_07321500.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
 gi|302493993|gb|EFL53774.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
          Length = 461

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 144/398 (36%), Gaps = 41/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +   L + V      LGAL +             I ++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAARELGVDVVSRGVFLGALMRNYKY--------SIGVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L   K         +  I +   L  +  +V  G  E  ++   E +       P +
Sbjct: 131 AKILIDAK--------VDPSILLGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+I  I   HL  +  +  I +      + L++     +N DD   E L +         
Sbjct: 183 AIILNIDEDHLDFYKDLNHIVATFIGYMKNLDENSKAIINIDDKNCEPLLSHIKG----E 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGI 302
           I +FG +++ AD+ +         +    V  +   K  E     IG H   + +  +  
Sbjct: 239 IITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIGRHNIYDAVAAIIA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D+DT  K +  +H      +R           +  + Y  +P  +K  +  L +
Sbjct: 299 CYEFHIDIDTIRKNMKEYHNLH---RRMETIGFYKGCEVKTD-YGHHPTEIKNTLKALDE 354

Query: 363 ISPHGEGRRIAVL-------GDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLAL 414
              H +G+   V          M  + + + +F+  D   V  +Y     + S  H   L
Sbjct: 355 ---HKKGKFYCVFQPHTYSRTKML-LDDFANAFYDCDEVVVTEIYAAREKFDSSIHSTDL 410

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            + L    ++  Y +T +    +I+S + + D+V+   
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMVLTTG 448


>gi|317046898|ref|YP_004114546.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. At-9b]
 gi|316948515|gb|ADU67990.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. At-9b]
          Length = 491

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 132/411 (32%), Gaps = 51/411 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    ++L  L +             IAI G+ GKTTT  M+    +     
Sbjct: 97  AAREQRIPVIRRAEMLAELMRFR---------HGIAIAGTHGKTTTTAMVASIYAEGGLD 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  N  +              + I E   S    +      ++P +A++T I   H
Sbjct: 148 ---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVTNIEADH 199

Query: 197 LS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +       E +          L   G   +  DD     L  +      + + ++G S++
Sbjct: 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDVVIRDLIPRV----GRQLTTYGFSED 255

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD ++  ++Q   Q    +    K +  V  +  G H A N    + + +    D +  +
Sbjct: 256 ADVRVENYEQRGAQGHFTLIRHDKPVLHVTLNAPGRHNALNAAAAVAVATEEGIDDNAIL 315

Query: 315 KALSVFHPKEGRGKRYRC--------ALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            AL  F    G G+R+                  ++ + Y  +P  +   I       P 
Sbjct: 316 AALESFQ---GTGRRFDLLGEFDTAPVNGTPGSAMLVDDYGHHPTEVDVTIKAARAGWPE 372

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDA 417
              + + V          ++    D A VLS          Y      + G    +L  A
Sbjct: 373 K--KLVMVF--QPHRYTRTRDLFDDFANVLSQVDVLLMLDVYPAGETAIPGADSRSLCRA 428

Query: 418 LPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     V        D L   +   L   D+V+V+ + + G  ++   L E
Sbjct: 429 IRGRGKVDPILVSEHDALPEALAPLLSGNDLVIVQGAGNIG--KIARKLAE 477


>gi|302380068|ref|ZP_07268545.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312141|gb|EFK94145.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 144/398 (36%), Gaps = 41/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +   L + V      LGAL +             I ++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAARELGVDVVSRGVFLGALMRNYKY--------SIGVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L   +         +  I +   L  +  +V  G  E  ++   E +       P +
Sbjct: 131 AKILIDAR--------VDPSILLGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+I  I   HL  +  +  I +      + L++     +N DD   E L +         
Sbjct: 183 AIILNIDEDHLDFYKDLNHIVATFIGYMKNLDENSKAIINIDDKNCEPLLSHIKG----E 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQS-WMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGI 302
           I +FG +++ AD+ +         +    V  +   K  E     IG H   + +  +  
Sbjct: 239 IITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIGRHNIYDAVAAIIA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D+DT  K +  +H      +R           +  + Y  +P  +K  +  L +
Sbjct: 299 CYEFHIDIDTIRKNMKEYHNLH---RRMETIGFYKGCEVKTD-YGHHPTEIKNTLKALDE 354

Query: 363 ISPHGEGRRIAVL-------GDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLAL 414
              H +G+   V          M  + + + SF+  D   V  +Y     + S  H   L
Sbjct: 355 ---HKKGKFYCVFQPHTYSRTKML-LDDFANSFYDCDEVIVTEIYAAREKFDSSIHSTDL 410

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            + L    ++  Y +T +    +I+S + + D+V+   
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMVLTTG 448


>gi|126461553|ref|YP_001042667.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166224719|sp|A3PHS9|MURC_RHOS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126103217|gb|ABN75895.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 470

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 141/411 (34%), Gaps = 48/411 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV    ++L  L ++            IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARLRGLPVVRRAEMLAELMRMRSN---------IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L          G ++  +     +     +   G  E  +    E  
Sbjct: 120 HGKTTTTTMVATLLDK--------GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADESD 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D +  + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFYDFVTNIPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGYH 291
            +   +  + I +FG +  AD +    +  +  +  +V LQ +    V         G H
Sbjct: 232 GR---VTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGAGHVIEGMSLPMPGDH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L    D   +AL+ F       +R+      G  T+ID+ Y  +P 
Sbjct: 289 NVSNALAAVAVARHLGMKKDEIREALAAFGGVN---RRFTKVGEVGGVTIIDD-YGHHPV 344

Query: 352 SMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSF-----HIDLAEVLSLYNISHV 404
            + A +    Q     +GR IAV        +  L   F       D+  +  +Y     
Sbjct: 345 EIAAVLKAARQA---VKGRVIAVHQPHRYSRLHSLFDDFCTCFNEADVVAIAEVYAAGED 401

Query: 405 WLSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKSSN 453
            + G     L   L    H H    +  D L   ++     GD+VV   + 
Sbjct: 402 PIPGAGRDDLVAGLIAHGHRHARAILCEDDLERLVREQARPGDMVVCLGAG 452


>gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 481

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  +   +EK+  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLL---MEKSRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|317129971|ref|YP_004096253.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
 gi|315474919|gb|ADU31522.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
          Length = 435

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 139/395 (35%), Gaps = 59/395 (14%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           + + +    +IPV    + LG   +           T IA+TGS GKT+T  +L   L  
Sbjct: 75  EEIKAAMEQNIPVNKYPNFLGEFIQQF---------TSIAVTGSHGKTSTTGLLAHVLQE 125

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            K T   IG             +   D ++ +FE       E R       P  A++T I
Sbjct: 126 AKPTSYLIGDG---------TGKGEKDSEYFVFEA-----CEYRRHFLHYSPDYAIMTNI 171

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   FSG++++  A  E+   ++K   I    DD++ + L A+        +  +G 
Sbjct: 172 DFDHPDYFSGVQDVFDAFQEMAMQVKKG--IIACGDDNYLQQLNAQV------PVVYYGF 223

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           ++  DF  +  +     +  +V ++          G G H   N L  + +      D++
Sbjct: 224 NEEHDFCGKNIRSDENGTHFDVYVRSSFYGSFTIPGYGKHNVLNALAVIALCKYEEVDIN 283

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                L  F   +    R       G   LID+ Y  +P  +   I    +  P+ E   
Sbjct: 284 IIQSRLITFSGVK----RRFSEKLVGNQVLIDD-YAHHPTEIAVTIDATRKKYPNRE--V 336

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------LKDALP--RS 421
           IAV          +++F  + A  L       V+L      A        ++D L     
Sbjct: 337 IAVF--QPHTFTRTKTFLDEFANCLQ--AADKVFLCDIFSSARENKGDLSIQDLLELIPD 392

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                 ET+D L  +      +  V++   +    
Sbjct: 393 ASTISEETIDQLSKY------EDAVILFMGAGDVQ 421


>gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 498

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 161/481 (33%), Gaps = 56/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  +L +               V+ IS+DS ++     F A+ G    G  F  HA    
Sbjct: 5   SLENLAEIAGARVENAPESSLSVSAISLDSNAVKSGAMFAALPGTRVHGATFA-HASDAS 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
           A L       +        PV  V+ V   L  +A           T+I +TG+ GKTTT
Sbjct: 64  AVLTDDAGWDILRETGFERPVLVVERVRDILGDVAAEIYGHPTEHLTVIGVTGTSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             +L   L++       IG+    I        +                   V   + E
Sbjct: 124 TYLLESGLTAAGCAVGLIGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHVVME 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L   R      +   A  T ++  HL     +E+   AKA +F+  EK     + 
Sbjct: 184 VSSHALVLGR--VDGTKFAAAGFTNLSQDHLDFHPTMEDYFEAKAILFDRAEK---AVVC 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +  ++H+    T+     S +   +L    +   Q  + V++ G+ +     
Sbjct: 239 IDDEWGQKMTQRAHSP--VTVGVHNTSADCTARLDSVTESGAQD-ITVRIGGQDISTRIP 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N  +   +   +  D    ++           G+  R ++ Q F  ++D  Y
Sbjct: 296 LPGAFNIANTALATALADSVGIDPKVFLQG---LDAARVPGRMERVSVGQPFVAVVD--Y 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              PA++ AA+  L +     +GR   V+G     G+   S    +    +      V +
Sbjct: 351 AHKPAAVAAALDSLRE---QVDGRIGVVVGA---GGDRDHSKRPLMGAEAATR-ADLVII 403

Query: 407 SG-----FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +          A++ A+ +            +    +       + +    GD ++V  K
Sbjct: 404 TDDNPRTEDPAAIRAAVKQGAESVIDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGK 463

Query: 451 S 451
            
Sbjct: 464 G 464


>gi|226951004|ref|YP_002806095.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
 gi|254765991|sp|C1FNF4|MURC_CLOBJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226844146|gb|ACO86812.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 458

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 149/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  + +I +A ++  + + K G +    +D   + +  +++     
Sbjct: 181 IGAILNIDADHLDYYRDLNDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKCKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +    I LA++ +        +S      L
Sbjct: 352 PHNKLFCVFQPHTYSRTLTLFDDFTKCFDNADE--IILADIYAAREKDTGIIS---SDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        D +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRDRGLKCTNFHKFDDIKNYLIENAKDGDLILTVGAGDI--YKVGEM 454


>gi|315652426|ref|ZP_07905414.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
 gi|315485325|gb|EFU75719.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
          Length = 437

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 140/371 (37%), Gaps = 40/371 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+  L           + +  I V   + ++  +V  G  +  ++
Sbjct: 93  IAISGTHGKTTTTSMLSYIL--------LDTNLDPTISVGGIVKKIRGNVYIGNGDTFVT 144

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P + VI  I   HL  F  +++I  +  +  +   + G I +N    
Sbjct: 145 EACEYTNSFLELYPTVGVILNIEEDHLDFFKDLDDIRDSFKKFVKNTSREGCIIIN---D 201

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI- 288
             +  +  +       +  +G ++N+D      +  +      ++  + ++ E V   + 
Sbjct: 202 KIKNNREITMGY-EGNVVRYG-TENSDCYAANIRYDAIGYPTFDLVHKEETYEDVKLCVG 259

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   L   ++   + L  F   +   +R+         T++D+ Y  
Sbjct: 260 GNHNIYNALAAVCVAFELGVGIEDIRRGLLEFKGVD---RRFEIKGKLDGITIVDD-YAH 315

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +P+ + A +++  +       R + V          +++   D A VL   N+  V ++ 
Sbjct: 316 HPSEISATLNIAKRYP---HDRLVVVF--QPHTYTRTKALFEDFANVLK--NVEQVIIAK 368

Query: 408 ----------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                     G     L D +     +    +T D +  ++   L  GD+++   +    
Sbjct: 369 IYPARETDNLGVSSHLLSDRINELGGNATSFDTFDEIENYLLEDLHKGDLLITMGAGDI- 427

Query: 457 FYRLINLLLEE 467
             R+   LL +
Sbjct: 428 L-RVGEFLLGK 437


>gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
 gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
          Length = 497

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 149/468 (31%), Gaps = 49/468 (10%)

Query: 22  VPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDF-ILHAVQKGAGLVVVNTDMVA 76
           VP G VN     I+ DSR + P   F  + G   DG  F         A  V+      A
Sbjct: 12  VPPGLVNPGLEAITTDSRRVGPGTLFLGLPGERVDGGSFWAQALEAGAAAAVIGAAAAAA 71

Query: 77  SIGSLSIPVFGV-DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              +   PV  + + V   + +L+ A       +  +I +TG+ GKTTT  ++    +S 
Sbjct: 72  KPPAADDPVVVIQESVARRIGELSAAYWDHPCRRMVLIGVTGTNGKTTTTHLIEHLAAST 131

Query: 134 KKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRF 177
            ++    G+  N        A                           E+    L + R 
Sbjct: 132 GQSVGLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAGCCLAAMEVSSHALAQQR- 190

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGT-IFLNYDDSFFEL 234
                R   AV T +   HL   + +E+   AKA +F    L   G    +N DD +   
Sbjct: 191 -VAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGVRSVVNSDDPWGAR 249

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  +  A   ++     +  +A+  +   +  +      +             +G     
Sbjct: 250 LAERLGAACWRSSL---EDPSAELHMSDLQMTAAGVEGRLISPAGEGRFRSPLLGRFNLM 306

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASM 353
           N+L  +G++      +   ++A+  F    GR +R             +   Y   P  +
Sbjct: 307 NLLQAVGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAVNLPPVLVDYAHTPDGL 366

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
               + LS   P   GR I V G     G+  +     +A + +      V  S      
Sbjct: 367 D---NALSAARPFCTGRLICVFGC---GGDRDRGKRPQMAAIAARLADRVVVTSDNPRTE 420

Query: 410 HVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + D     +P    +              +     D+V+V  K 
Sbjct: 421 DPQRILDDVVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLVAGKG 468


>gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 130/372 (34%), Gaps = 35/372 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I I+G+ GKTTT  M+   L           +YN  + V   + ++  +   G  E 
Sbjct: 102 KNVITISGTHGKTTTTSMIGYILKKA--------NYNPTVLVGAFVKQLGGNFVIGSKEY 153

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E         P I VI  I   HL  F  I+ I ++  +  + +  +G + +NY
Sbjct: 154 LVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFLVVNY 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVH 285
           DD   + +  + +      I      +  D               +V+     +   +  
Sbjct: 214 DDKNVKDIINQLNT----QIICISTKEKTDIFADNISCSDGYYEFDVKNNNDEILAHIKL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G+H   N L    + S L  +  T  +ALS F    G  +R           L D+ 
Sbjct: 270 NIPGFHNVYNALAAFAVASKLGVESITIEQALSEF---RGASRRLEKVGEFNGIYLYDD- 325

Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  +KA ++ L +           PH   R   +L +  E  +L+         V 
Sbjct: 326 YAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLQLADK-----VIVT 380

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y      + G     L   L    I   Y    + +  +       GD++    +   
Sbjct: 381 DVYAAREKNVFGITSEKLYLKLKEIGIDCEYISNFEDIACYAVKEAKKGDIIATIGAGDI 440

Query: 456 GFYRLINLLLEE 467
              + ++++L++
Sbjct: 441 N--KCLDIILKK 450


>gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
          Length = 243

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGHD++  A+  
Sbjct: 1   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYGTPPKG--VPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   LSS  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G
Sbjct: 118 DIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 167


>gi|56421350|ref|YP_148668.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261418169|ref|YP_003251851.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. Y412MC61]
 gi|297529026|ref|YP_003670301.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|319767871|ref|YP_004133372.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
 gi|68565686|sp|Q5KW36|MURC_GEOKA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56381192|dbj|BAD77100.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261374626|gb|ACX77369.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61]
 gi|297252278|gb|ADI25724.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|317112737|gb|ADU95229.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
          Length = 434

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 136/399 (34%), Gaps = 53/399 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   L +PV      LG L           K T IA+TGS GKTTT  +
Sbjct: 68  NAFPDTHEEIEAARQLGVPVIRYHRFLGQLA---------GKFTSIAVTGSHGKTTTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   +     T   IG             +      + +FE       E R       P 
Sbjct: 119 LAHVMQGAHPTSYLIGDG---------TGKGEPGSKYFVFEA-----CEYRRHFLSYFPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   F+ ++++ SA  ++   ++K   I    DD +   ++AK       
Sbjct: 165 YAIMTNIDFDHPDYFANVDDVFSAFQQMANQVKK--AIVACGDDPYLPNIQAKV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I  +G  +  DFQ R   + +E    +V ++            G H   N L  + +  
Sbjct: 217 PILFYGFGEENDFQARNIVKTTEGMAFDVFVRNTFFASFAIPRFGTHNVLNALAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D  T  K L  F   +    R       G   LID+ Y  +P  + A +    Q  
Sbjct: 277 YEGVDAGTIAKRLQTFQGVK----RRFSEKTVGRQVLIDD-YAHHPREITATLEAARQKY 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           P  E   +A+          +Q+F  + AE  SL    HV+L      A +     +I  
Sbjct: 332 PGRE--VVAIF--QPHTYTRTQTFLREFAE--SLLQADHVYLCDIFGSAREHEGKLTIRD 385

Query: 425 HYSETM------DGLFLFIQSSLVDGDVVVV-KSSNSCG 456
             ++        +     ++      D V+V   +    
Sbjct: 386 LQAQIPRSQLLEEQNVAVLK---QHQDAVLVFMGAGDIQ 421


>gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
 gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 146/377 (38%), Gaps = 38/377 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKTTT  ML+      +         +  I V   L  +  +V  G
Sbjct: 98  MREYKNSIAVSGTHGKTTTTSMLSTIFEHAE--------LDPTILVGGNLKSIGGNVKIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  ++   E         P IA++  I   HL  FSGI+EI ++  +  + L   G  
Sbjct: 150 HSDHFITEACEYVDSFLNFNPKIAIVLNIEEDHLDYFSGIDEIKASFNKFGKLLPSDGYF 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSME 282
            +N D+   ++L    H +  K I  FGK ++ D  +             ++   GK + 
Sbjct: 210 VINGDNQNMDIL----HDVKAKAIK-FGKKESNDVIIENIAFDDLGCGSFDLNYMGKKLT 264

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N    + +  +   D++T  + +  +    G G+R+          +
Sbjct: 265 GFKLSVPGLHNIYNATSAIIVSLVSGIDLETVKEGIIDYT---GVGRRFERKGQYNGAAI 321

Query: 342 IDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFH-ID 391
           ID+ Y  +P  +KA +S   +           PH   R I++L       E +++F+  D
Sbjct: 322 IDD-YAHHPTEIKATLSTAKRFKKGTLWCVFQPHTYSRTISLL------DEFAEAFYSAD 374

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +  +Y          H   L + L   ++   Y    + +  +++ ++ + DVV+  
Sbjct: 375 KVIITDIYAAREDDPGTVHSRDLVEKLQHNNVDAIYISQFEDIVKYLKENVKENDVVITT 434

Query: 451 SSNSCGFYRLINLLLEE 467
            +       +   L++E
Sbjct: 435 GAGPIYL--VGEELIKE 449


>gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 481

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLV 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae
           TIGR4]
 gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 481

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  +   +EK+  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLL---MEKSRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1]
          Length = 478

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 139/380 (36%), Gaps = 26/380 (6%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D  L  +++    A L     ++A+ G+ GKT+T  M+T+AL       +        IG
Sbjct: 94  DQGLQVVHRAVALAALTEGRRLVAVAGTHGKTSTTSMVTVALQHTGADPS------FAIG 147

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             L+++        G   +  +   +  F      P +AV+T + P HL +        +
Sbjct: 148 GDLSVSGSGAHHGSGDVFVVEADESDGSFTA--FAPSVAVVTNVEPDHLDHHGDEATYRA 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQC 266
                 E L    T+    DD   EL+   +   GI T+  +G++     D +L  +   
Sbjct: 206 VFERFLERLVPGATLVTCADDPGSELVAVHAERAGI-TVRRYGRTATGSQDARLLDFAPD 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S    +  G+  E+     G HMA N L      + +  D    ++ L+ F    G 
Sbjct: 265 GVGSRTRFRWGGEEHELALGVPGEHMALNALGAFLAGTAVDQDPAALLEGLAGFG---GV 321

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELS 385
            +R+          + D+ Y  +P  + A +    + +P  +GRR  VL      +   +
Sbjct: 322 QRRFEFKGRVRGVAVYDD-YAHHPTEVAATLRAAREAAPVVQGRRGRVLVAFQPHLYSRT 380

Query: 386 QSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFL 435
           + F  +            VL +Y        G     + D +   +  VH + + +    
Sbjct: 381 RLFAGEFGASLSLADEVMVLDVYGAREDPEPGVGPALITDQVRLPAERVHRAPSWEKTPA 440

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
            I +   DGD V+   +   
Sbjct: 441 AIAALAADGDTVITMGAGDI 460


>gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 472

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 145/372 (38%), Gaps = 30/372 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++    A L +   +  I G+ GKT+T  MLT+AL +      C    +  IG  L  +
Sbjct: 102 LHRAQALAGLMAGHRVACIAGTHGKTSTTSMLTVALQN------CRMDPSFAIGGDLNES 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                   G   +  +   +  FLT+   P +AV+T + P HL +    E      ++  
Sbjct: 156 GANAHHGEGGVFVAEADESDGSFLTYT--PSVAVVTNVEPDHLDHHGTAEAYVKVFSDFV 213

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWM 272
             +E  G + +  DD     L  ++ A G++ +  +G+  S   D ++  +    +   +
Sbjct: 214 GQIEPGGLLIVCADDEGAARLGEEAAAAGVR-VRRYGRAASGEGDVRVLDYTPAPDGGVV 272

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            + L G+  ++     G HMA N +  L     L A +D     L+ F    G  +R+  
Sbjct: 273 RIALDGEEHDLRVAVPGEHMALNAVAALLAGLELGAPLDGMAAGLAAFG---GVRRRFEF 329

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G   + D+ Y  +P  + A +  +   + +  GR + V      +   +Q+F  + 
Sbjct: 330 KGRAGDVRVYDD-YAHHPTEVAAQLRAVRTAAGN--GRVVVVF--QPHLYSRTQTFAAEF 384

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           AE         VL ++      + G     +   +  ++ VHY    D     +   +  
Sbjct: 385 AEALSLADEVVVLDVFGAREEPVPGVTGALIAGRV--TVPVHYQPAFDVAAGLVADLVRP 442

Query: 444 GDVVVVKSSNSC 455
           GD+ +   +   
Sbjct: 443 GDLAITMGAGDV 454


>gi|260578085|ref|ZP_05846007.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603825|gb|EEW17080.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
          Length = 498

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 142/436 (32%), Gaps = 58/436 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+L  L +   A  L          G+ GKT+T  M
Sbjct: 82  AAIPQDNPELVGAREAGIPVLRRSDILALLLQDRRAFLL---------AGTHGKTSTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              AL +  +        +    +   L R   +   G  E+ ++   E         P 
Sbjct: 133 AVAALQAAGQ--------DPSFAIGGQLNRAGTNAHNGTGEIFVAEADESDGSFLSYSPE 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P HL  F                +   G + +  DD     L     A   +
Sbjct: 185 IAVVTNIEPDHLDYFKTEAAYREVFENFAHRIVPGGFLVVCLDDPGSAALAENLIAGAEE 244

Query: 246 ------TIYSFGKSKNADFQ--------LRKWKQCSEQSWMEVQLQGK----------SM 281
                 T+  +G ++  D          +   +  +E +   ++L  +          + 
Sbjct: 245 GTPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGTVSALRLTEEVKKAAEEAAGTY 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G HM  N         +L ADVD  I  +  F   +G  +R+     +    +
Sbjct: 305 SLRVAIPGIHMVLNAAAAALGSVLLGADVDKVIGGIGGF---DGVRRRFEYHGTRQDVEV 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------- 394
            D+ Y  +P  + A ++   Q      GR +AV      +   + +F  + AE       
Sbjct: 362 YDD-YAHHPTEVAAVLAAARQRVEARGGRIVAVF--QPHLYSRTINFADEFAEALSLADQ 418

Query: 395 --VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +L ++      + G     + + +  S    +      +   +   +  GD+V+   +
Sbjct: 419 VVLLDIFGAREEPVEGVDSRIIGNKISASTEWVFEPDFSNVSNVVAGLVQPGDMVLTIGA 478

Query: 453 NSCGFYRLINLLLEEF 468
            +     L + +L E 
Sbjct: 479 GTVTM--LADEILLEL 492


>gi|313888013|ref|ZP_07821691.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845968|gb|EFR33351.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 464

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 141/378 (37%), Gaps = 35/378 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A +++    IA++G+ GKT+T  MLT  +  +          N  I +   L  +  ++ 
Sbjct: 106 AVMKNYDKSIAVSGTHGKTSTTSMLTEIIKDLD--------VNPTIMLGGQLKDIDGNIK 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G  +L ++   E +       P   +I  I   HL  F  I+ I        + L ++ 
Sbjct: 158 IGDEKLFLTEACEYKANILKYFPTTEIILNIDEDHLDYFDNIDHIIRTFKGYVDNLRESD 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS 280
            + +N DD   + L    +       ++FG   +AD   +  +   E     ++ L+ + 
Sbjct: 218 YVVINIDDENAKTLLPIENC----KFFTFGIKNHADLMAKNIEFNEEGFPTYDLYLRDEK 273

Query: 281 MEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  V    +G H   N L  +G   +    +  +I   +     +G  +R          
Sbjct: 274 VAHVELSVLGRHNILNSLAAIGAAYVNGISIKDSI---AGLKSYKGVERRLEVKGFYKGA 330

Query: 340 TLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            ++D+ Y  +P  +K++I  +             PH   R   +L       + S     
Sbjct: 331 KVMDD-YAHHPTEIKSSIHAIKNACKGKLYTVFQPHTFTRTKLLLDAFANSFDES----- 384

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           D+  +  +Y          H   L++A+     +  Y    + +  F++ ++   D+ V 
Sbjct: 385 DVIIITDIYAAREKDYGDIHSKTLRNAIADHRDNAFYISGFEDIVKFVKENISKDDIFVT 444

Query: 450 KSSNSCGFYRLINLLLEE 467
             +     Y++  +LL+E
Sbjct: 445 MGAGDV--YKIGEMLLDE 460


>gi|260899196|ref|ZP_05907591.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107130|gb|EFO44670.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
          Length = 410

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 124/358 (34%), Gaps = 34/358 (9%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + Y  +P  +   I+         + R + +          ++  + D A VL   ++
Sbjct: 348 DDYGHHPTEVDVTINAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFANVLEQVDV 401


>gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 483

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 146/449 (32%), Gaps = 41/449 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  D+R + P   +  +   H DG  F+  A   GA   ++ +      G    PV+ 
Sbjct: 24  QGIETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESSDEDVHGGQDHPVWQ 83

Query: 88  VDDVLGALN---KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---------IKK 135
                  L    +            I+ +TG+ GK++   ++                 +
Sbjct: 84  SPKARTLLGMALRRWYRWDEGLAPVIVGVTGTNGKSSVTRLIAELAPQPAMIIGTLGHGR 143

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             A I   N           M    D G  +  + +S           V    AV T ++
Sbjct: 144 VDALISQANTTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAAVFTNLS 203

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +    ++K  +F+         LN DD+F   + A + A  ++    FG  
Sbjct: 204 RDHLDFHGDMARYGASKTRLFQ-TPGLRLAVLNGDDAFTGQIAA-AMAPEVRQ-LRFGVG 260

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D+Q       +  + ++++    S  +    IG    QN+L  L     +   V  A
Sbjct: 261 SG-DYQAVALHPGASGTLLDLRTPAGSRRIRSPLIGNSNVQNLLAALATAEGMGWPVSDA 319

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             A          G+  R A   G   ++ + Y   P +++  ++ L +++   +G    
Sbjct: 320 AIAGLDL----PEGRYQRLAPVPGKAQVMID-YAHTPDALRRVLTDLREVA---KGAVTV 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD----ALPRSIHV 424
           V G     G+  +    ++  +       HV L+          A+ D     + +    
Sbjct: 372 VFGC---GGDRDRGKRPEMGRIAERL-ADHVILTDDNPRSEAPEAIADDILGGMEQPGQA 427

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         ++   GD V++  K 
Sbjct: 428 TVIHDRAAAIRAAIAASRAGDWVLIAGKG 456


>gi|218674669|ref|ZP_03524338.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli GR56]
          Length = 471

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 153/415 (36%), Gaps = 53/415 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  S   L       +PV    ++L  L +   A         IAI G+ G
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFRNA---------IAIGGTHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L +       I      I    T ARM    ++ + E   S    ++  
Sbjct: 118 KTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-EWMVVEADESDGTFLK-- 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +
Sbjct: 173 ---LPADVAVITNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGYH 291
                 + I ++G++  AD + +  +    +S  +V+++ +    V           G H
Sbjct: 230 IE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + + + L        K L+ F   +   +R+          + D+ Y  +P 
Sbjct: 287 NISNATAAIAVANRLGISSADIAKGLASFGGVK---RRFTLTGEWNGVQIFDD-YGHHPV 342

Query: 352 SMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNIS 402
            +KA   VL       +GR IAV        L  + E  E +  F+  D   +  +Y   
Sbjct: 343 EIKA---VLRAAREACKGRIIAVHQPHRYSRLASLFE--EFAACFNDADSIFLAPVYAAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G    +L   +    H    +  + + L   +      GD VV+  + S 
Sbjct: 398 EDAIEGADSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAGSI 452


>gi|313124202|ref|YP_004034461.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280765|gb|ADQ61484.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 439

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 129/374 (34%), Gaps = 50/374 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T I + GS GKT+T  +L   L     T   IG           + +   D  F ++
Sbjct: 104 QQYTSIGVAGSHGKTSTTGLLATVLGEAAPTSFLIGDG---------MGKGVKDSRFFVY 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P   ++T +   H   F   ++ ASA        +K   +F+
Sbjct: 155 EA-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAAQTKKG--LFV 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD   + ++ K+        Y++G   + DFQ     + +E +   V+  G+ + E  
Sbjct: 208 WGDDERLQKIQPKTAKK-----YTYGLKDSDDFQAFDVVKTTEGAKFHVRANGEDLGEFS 262

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N    + I      D+D   K        +  G + R +      T++ +
Sbjct: 263 IHLFGDHNVMNATAVIAIAFTEGIDLDVVRKG-----LVKYTGAKRRFSEKDFGDTVVID 317

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  ++A I    Q     + + + +          ++ F  +  E+L    +   
Sbjct: 318 DYAHHPTELRATIQAARQ--KFPDRKLVTIF--QPHTYSRTKEFEEEYVEILK--GVDKA 371

Query: 405 WL---SGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +L    G    A  D     I        V   + +  L  +       GD +V   +  
Sbjct: 372 FLTPIYGSAREAAGDIKSEDITSQIPGAEVIDFDNLKDLLAY------KGDCIVFMGAGD 425

Query: 455 CGFYRLI-NLLLEE 467
              Y +    +LE+
Sbjct: 426 IPKYEVAFEEMLEK 439


>gi|227504694|ref|ZP_03934743.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
 gi|227198704|gb|EEI78752.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
          Length = 484

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 147/430 (34%), Gaps = 50/430 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +A   +  IPV    D+L  L +             I + G+ GKT+T  M
Sbjct: 79  AAIPQDNPELAGARAAGIPVIRRSDLLAELMEGHQQ---------ILLAGTHGKTSTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              A+             +    +   L R   +   G     ++   E         P 
Sbjct: 130 TVTAMQQAG--------LDPSFAIGGQLNRAGTNAHAGTGAAFVAEADESDASLLRYSPT 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT + P HL  F   E       +  + +E++G + +  +D        ++   GI+
Sbjct: 182 VAVITNVEPDHLDFFHNAEAYYKVFDDFADRIEESGYLVVCLEDDHAAQTGLRALERGIQ 241

Query: 246 TIYSFGKSK----------NADFQLRKWKQCSEQSWMEVQLQG---KSMEVVHHGIGYHM 292
            +  +G ++           A+    K      Q  + V L G   + +       G+HM
Sbjct: 242 -VLGYGSAEAGEKYPSIPLAAEVLEEKVSVIGMQVRVRVALPGAQSQELSYELQIPGHHM 300

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  L    +   ++    + L+ F    G  +R+     +    + D+ Y  +P  
Sbjct: 301 VLNSLAALVSGGLAGGELSELAEGLTDFT---GVRRRFEFRGTESQVRVFDD-YAHHPTE 356

Query: 353 MKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNI 401
           + A ++   Q   +     R IA       +   +  F  + A+         VL +Y  
Sbjct: 357 VTAVLTAARQKVEAEGKGARVIACF--QPHLYSRTMEFDKEFAQALALADAAVVLDIYGA 414

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               + G     + D +P  + V +          + S +  GDVV+   + S     L 
Sbjct: 415 REQPVEGITSRIITDKMPEDMKVIFEPNFSEAAQDVVSLVQPGDVVLTIGAGSVTM--LA 472

Query: 462 NLLLEEFPAI 471
             +L+E  A+
Sbjct: 473 AEILDELKAL 482


>gi|229175402|ref|ZP_04302917.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
 gi|228608234|gb|EEK65541.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
          Length = 436

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   FS I ++ +A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFSDINDVFNAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|210623279|ref|ZP_03293696.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
 gi|210153680|gb|EEA84686.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 139/374 (37%), Gaps = 31/374 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+                +  I V   L+ +  +V  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSAIFEYAD--------LDPTILVGGNLSMIGGNVKIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                ++   E         P I+++  I   HL  FSGI+EI ++  +  + L   G  
Sbjct: 150 HSNHFITEACEYVDSFLNFNPKISIVLNIEEDHLDYFSGIDEIKASFNKFGKLLPPDGYF 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM- 281
            +N DD     +     A    T+  +G +K+ D  ++  +         ++   G+ + 
Sbjct: 210 IINGDDENTADILYDVKA----TVIKYGSNKDNDAVIKNIEFDELGCGIFDLVYNGEDLG 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +      G H   N +  +    +   DV+T  +         G G+R+         T+
Sbjct: 266 KFELSVRGLHNIYNAVAAIITSIVSGIDVETIKR---NIKKYRGVGRRFEFKGKYNGATI 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------MGELSQSFH-IDLAE 394
           +D+ Y  +P  +K+ +S   +I  +   R   +            + E S +F   D   
Sbjct: 323 VDD-YAHHPTELKSTLSTAKRIKKN---RLWCIFQPHTYSRTKSLLNEFSDAFFAADKVI 378

Query: 395 VLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V  +Y          H   L + L   +I   Y +  D +  ++  ++   D V+   + 
Sbjct: 379 VTDIYAARETDPGDIHSTDLVEKLYHNNIDAKYIKEFDDIVEYLADNVEPDDFVITAGAG 438

Query: 454 SCGFYRLINLLLEE 467
               +++   L+ +
Sbjct: 439 PI--FKVAEALVAK 450


>gi|300813578|ref|ZP_07093909.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512326|gb|EFK39495.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 462

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 132/369 (35%), Gaps = 36/369 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI+G+ GKT+T  M+   + ++       +G   + I   + + +           L +
Sbjct: 115 IAISGTHGKTSTTSMVAEIIKNLDTDPTIMLGGQLDDINGNIKIGKEKK--------LFL 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   E +     + P  AVI  I   HL  F  I+ I        E L K     +N DD
Sbjct: 167 TEACEYKANILKLFPTTAVILNIDEDHLDYFDNIDHIIRTFKGFTEKLNKNDYCIINIDD 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHG 287
                L    +A     + +F   K AD+  +           +          +V    
Sbjct: 227 ENTRKLLPIDNA----KLITFAIDKKADYMAKNIDFDMYGRPYYDLYYKDKYIGKVELAI 282

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +GYH   N L  +G       D +  IK +  +   +G  +R           ++D+ Y 
Sbjct: 283 LGYHNIYNTLAAIGACHENGIDFEKCIKGIGDY---KGVHRRLEFKGLYKNSRVMDD-YA 338

Query: 348 ANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +K++IS + +           PH   R   +L    +  + S     D+  +  +
Sbjct: 339 HHPTEIKSSISAIKKSCKKRLFTVFQPHTFTRTKLLLDSFAKSFDQS-----DVIIITDI 393

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           Y          H   L DA+     +  Y +    +  +++ +L D D VV   + +   
Sbjct: 394 YAAREKDYGDIHSKTLVDAISNHHKNAIYIKEFSDIIKYLKENLKDDDTVVTMGAGNV-- 451

Query: 458 YRLINLLLE 466
           Y +   LL+
Sbjct: 452 YEIGQELLK 460


>gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
 gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
          Length = 497

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 147/428 (34%), Gaps = 41/428 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  AV      +      +A    L IPV    DVL  L + + A         + I G+
Sbjct: 81  LPEAVVISFAAIPKTNPELAGAHELDIPVLKRSDVLALLMQDSKA---------LLIAGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  M   AL +           +    V   +++  V+   G  ++ ++   E  
Sbjct: 132 HGKTSTTSMTVAALQAAG--------LDPSFAVGGLMSKAGVNAHQGSGDVFVAEADESD 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 +P +AVIT I P HL  F   E   +      E ++  G + +  +D     L 
Sbjct: 184 ASLLTYQPEVAVITNIEPDHLDFFGDDETYYAVFDAFAERIKDGGHLVVCAEDPHAAALG 243

Query: 237 AKSHALGIKTIYSFGKSKNA-------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            ++   GI  +   G+   A          L  W      + +E  +   S+    H  G
Sbjct: 244 ERAVERGINVLAYGGEDALAKHPTLPVGAVLHGWTPVGGGARVEATVGSTSVRFELHQPG 303

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNA 348
            HMA N L  +     + AD+    + L  F     R   +       F    I + Y  
Sbjct: 304 RHMALNALAAMVGGDCVGADLGRMARGLGEFTGVRRRFDYHGSIGEGPFVGARIYDDYAH 363

Query: 349 NPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-------- 399
           +P  + A +    ++ +  G G  IAV      +   +++F  + A  LSL         
Sbjct: 364 HPTEVSAVLGAARELVTEAGRGNVIAVF--QPHLYSRTRNFADEFAAALSLADKAVLLDV 421

Query: 400 -NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF- 457
                  L G     + + +  +I V Y      +   ++      DV++   + S    
Sbjct: 422 FGAREEPLPGVDGALIANKM--TIPVTYEPHFTSVPARVREIAEPHDVILTIGAGSVTML 479

Query: 458 -YRLINLL 464
              ++  L
Sbjct: 480 ADEIVREL 487


>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 258

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 83/250 (33%), Gaps = 34/250 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I   + F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDINIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217
           + E+    L             IAV T +   HL      +E    K+ +F  L      
Sbjct: 176 VMEVTSQGLHM--ERVKECNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLST 233

Query: 218 EKTGTIFLNY 227
                  LN 
Sbjct: 234 TDKKIAVLNA 243


>gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
 gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
          Length = 516

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 140/393 (35%), Gaps = 36/393 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL QA+ G   G    G V G  ID+R++   E F A+ G H  G  F   A  +GAG V
Sbjct: 24  DLAQAVGGTVHGDG--GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAV 81

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126
           + +   +A +  L IP   V DV     + A  A  +   + +   +TG+ GKTTT  +L
Sbjct: 82  LSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTYLL 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMS 170
              L  +    + +G+    +G     A                 +  +V   + E+   
Sbjct: 142 RHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSH 201

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L   R     +       T ++  HL     +E+    KA +F        + +  D  
Sbjct: 202 ALAMGR--VDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVII-VDGV 258

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGI 288
           + + L  +    G     +     + AD+Q +  +     + + ++   GK   V     
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGYTELRLRAFDGKEASVQVRMP 318

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLID 343
           G   A N  + + ++ +             +         R         L +    ++D
Sbjct: 319 GTFNAINAALAI-VMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD 377

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +  NP S K  +     +    +GR + V+G
Sbjct: 378 --FAHNPDSTKVLLDT---MRISTKGRLLLVMG 405


>gi|317010960|gb|ADU84707.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SouthAfrica7]
          Length = 493

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 138/345 (40%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + +   D  +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTTFNVHASPKSVNTLLGIASDINQNLEDSSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKDITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLENAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ L G       
Sbjct: 287 SVE-------KIKPYAPNNAPLIDYSS------LVKNIQSTLKGTSFEMLLDGVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+ + + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIALAILIAKHLGLETERIKRLVLDLNPIAHRLQLLEV----NQKVIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S      LAE ++        
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTESNEI---LAEKINEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L +   +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASHLKKPQKIL-LKDKGQLENILQATTIQGDLILF 485


>gi|89055250|ref|YP_510701.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
 gi|109892708|sp|Q28NN6|MURC_JANSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|88864799|gb|ABD55676.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
          Length = 474

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 146/427 (34%), Gaps = 51/427 (11%)

Query: 49  PHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAV 100
                  F+    +   GA +VV+++ +              +P+    ++L  L +L  
Sbjct: 54  ERLGARVFVGQQAENLEGAEVVVISSAIKPGNPEYDAARLRGLPIVRRAEMLAELMRLRS 113

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     IA+ G+ GKTTT  M+   L         I      I    + AR+    
Sbjct: 114 N---------IAVGGTHGKTTTTTMVATLLDHGGVDPTVIN--GGIIHAYGSNARVGQGD 162

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              +         E     + +   IA++T I P H+ ++  IE +     +    +   
Sbjct: 163 WMVV------EADESDGTFNRLPATIAIVTNIDPEHMEHWGTIENLRQGFLDFVSNIPFY 216

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G      D    + L  K   +  + + +FG +  AD +       +  +  ++ LQ + 
Sbjct: 217 GLAVCCTDHPEVQTLVGK---ITDRRVVTFGFNAQADVRAVNLHYRAGVACFDIALQSED 273

Query: 281 M---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +          G H   N L  + +   L    D   +AL  F   +G  +R+      G
Sbjct: 274 ILIEGCTLPMPGDHNVSNALAAVAVARHLGMKADEIREALDGF---KGVNRRFTKVGEVG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSF 388
             T+ID+ Y  +P  + A +    Q           PH   R  ++  D C  G  S++ 
Sbjct: 331 GITVIDD-YGHHPVEIAAVLKAARQASDGRVIAVHQPHRYSRLHSLFDDFC--GCFSEA- 386

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDV 446
             D+  +  +Y      + G     L   + R  H H       D L   ++     GD+
Sbjct: 387 --DVVAIAEVYAAGEDPIEGASRDDLVAGMIRHGHRHARAILDEDDLERLVREQARPGDM 444

Query: 447 VVVKSSN 453
           VV   + 
Sbjct: 445 VVCLGAG 451


>gi|307244053|ref|ZP_07526172.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492577|gb|EFM64611.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 453

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 150/418 (35%), Gaps = 48/418 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                  +D    +         + +    L ++    R       IA+ G+ GKT+T  
Sbjct: 64  VVYTAAISDDNEELVEAKNKNILLINRAAFLGQIMREYRNS-----IAVAGTHGKTSTTS 118

Query: 125 MLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +L+     +    T    G+          L+ +  +V  G  +  ++   E        
Sbjct: 119 ILSTIFDYAQTDPTVLVGGN----------LSTIGGNVRIGNSKHFITEACEYVDSFLSF 168

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I ++  I   HL  FSG++EI ++  +  + L ++G   +N D+   + +     A 
Sbjct: 169 NPLIGIVLNIEEDHLDYFSGLDEIKASFNKFGKLLPQSGYFIINGDNENTKDIVYDVRA- 227

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTL 300
               I  FG++ + D  +   +      +   ++ +G ++   H  + G H   N    +
Sbjct: 228 ---NIIRFGQNPDNDAIISDIRYDENGYAIFNLKYKGVNLGGFHLSVYGLHNIYNATAAI 284

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   DVDT  K++  +H   G G+R+          +ID+ Y  +P  +KA ++  
Sbjct: 285 LAAIVSDIDVDTIRKSVLEYH---GVGRRFEKKGYYNDALVIDD-YAHHPTEIKATLAAA 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416
             +       +   +         ++S   + +E    Y+   V ++  +    KD    
Sbjct: 341 KNLRD-----KKLWVAFQPHTYSRTKSLFKEFSEAF--YSADKVIVTDIYAAREKDPGDI 393

Query: 417 --------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                       ++   Y  T D +  +I+  L   DV +   +      R+   LLE
Sbjct: 394 SSKDLVQSLYQNNVDAIYLPTFDEIVDYIKDKLGPNDVFMTCGAGPIN--RVAEALLE 449


>gi|168183628|ref|ZP_02618292.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|237797009|ref|YP_002864561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Ba4
           str. 657]
 gi|259509765|sp|C3KWA4|MURC_CLOB6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182673211|gb|EDT85172.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|229261312|gb|ACQ52345.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum Ba4
           str. 657]
          Length = 458

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 149/410 (36%), Gaps = 44/410 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D LG L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+          A   + +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHV--------ALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  +++I +A ++  + + K G +    +D   + +  ++      
Sbjct: 181 IGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEASC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G +   D Q    +   +   ++  V+   K   V  +  G H   N L ++ I 
Sbjct: 237 NVITYGINSG-DIQAHNIEYDEKACGNFDVVKNNQKLFSVKLNVPGKHNILNSLASICIG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                     I+ +  F    G  +R+     +   T+ID+ Y  +P  + A +    + 
Sbjct: 296 LASNMKDKDIIEGIESF---FGTHRRFELKGCKNNITVIDD-YAHHPTEISATLDAAKKY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  D  +  + +    I LA++ +        +S      L
Sbjct: 352 PHNKLFCVFQPHTYSRTLTLFDDFTKCFDKADE--IILADIYAAREKDTGIIS---SDML 406

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            D L  R +        + +  ++  +  DGD+++   +     Y++  +
Sbjct: 407 GDKLRDRGLKCTNFHKFNDIKNYLIENAKDGDLILTVGAGDI--YKVGEM 454


>gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
 gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
          Length = 486

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 135/392 (34%), Gaps = 27/392 (6%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A     + ++A+ G+ GK+TT  M+ + L  +    +             
Sbjct: 104 LRVLHRSEALAAAMGSSQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSN 163

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  +  + + E   S    +R+     +P IAV+T + P HL  +   E +  A  
Sbjct: 164 ARLGATGEGSWFVAEADESDGSFVRY-----QPAIAVVTNVEPDHLDFYETPERVYEAFN 218

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                +   G +   +DD     L  ++   GI+ + ++G+S  AD ++ +      +S 
Sbjct: 219 RFVASMAPGGVLVTCWDDEGARALAERARDAGIE-VVTYGQSTEADLRVSRITSHGSESS 277

Query: 272 MEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             ++   +          +      G H   N         +  A  + A  AL  F   
Sbjct: 278 ATLRWSFECASKHYEGEQDAQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFG-- 335

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G  +R+    +     + D+ Y  +P  +  A+     ++       +          E
Sbjct: 336 -GADRRFTLRGDVAGIKVFDD-YAHHPTEVFRALETGRTVADGHNLYVVFQPHLFSRTQE 393

Query: 384 LSQSFHIDLAE-----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  F   L++     VL +Y    + + G     +  A      VHY+         I 
Sbjct: 394 FAADFAQALSKADRSYVLDIYPARELPIEGVTSELITGAGFS--EVHYASDAAAAIEDIA 451

Query: 439 SSLVDGDVVVVKSSNSC-GF-YRLINLLLEEF 468
              V GD+++   +        R+++ L   +
Sbjct: 452 MCAVPGDIIMTIGAGDVTALGERILHELHARY 483


>gi|264680245|ref|YP_003280155.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|299533117|ref|ZP_07046502.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
 gi|262210761|gb|ACY34859.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|298718894|gb|EFI59866.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
          Length = 477

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 158/445 (35%), Gaps = 51/445 (11%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F      + DG D ++      +  V  +   V +     IPV     +L  L +     
Sbjct: 54  FVGHAAENVDGSDAVVT-----STAVQGDNPEVLAAREKKIPVVPRALMLAELMRFKQG- 107

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
                   IAI G+ GKTTT  ++T  L+         IG   N  G    L +     D
Sbjct: 108 --------IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIGGKLNSAGANAKLGQG----D 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
           + + E   S    +  L     P +AV+T I   H+  +      +  A  +    +   
Sbjct: 156 YIVVEADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFY 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK- 279
           G   L  D      +  K      + + ++G +++A  +    +  + +    V+ Q   
Sbjct: 211 GRAILCVDSPAVREILPKLA----RPVTTYGFAEDAQVRAVNVRAEAGRMRFTVRRQNGQ 266

Query: 280 ---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALN 335
               +EVV    G H   N L  + +   L    +  ++AL  F     R +RY      
Sbjct: 267 SYPDLEVVLSLPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGELPAA 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G    + + Y  +P  M A ++      P        VL         ++    D  +V
Sbjct: 327 NGGTFTVIDDYGHHPVEMAATLAAARGAFPGQR----LVLAFQPHRYSRTRDCFEDFVKV 382

Query: 396 LSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           +   +   ++ V+ +G   +   D   L R++ V       + E +  +   I ++   G
Sbjct: 383 IGSADSVLLAEVYAAGEAPIVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQAG 442

Query: 445 DVVVVKSSNSCGF--YRLINLLLEE 467
           DV++   + S G    +L+ +L ++
Sbjct: 443 DVLLCMGAGSIGAVPGKLVEMLQKQ 467


>gi|254468468|ref|ZP_05081874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
 gi|207087278|gb|EDZ64561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
          Length = 423

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 128/332 (38%), Gaps = 26/332 (7%)

Query: 83  IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           I   GV D+     K+   V   L     +  +TG+ GKT+T   L   LS ++K    I
Sbjct: 19  IKFLGVRDLAWKQKKVLDRVYGNLNRHIKLYGVTGTNGKTSTAFWLNHLLSKLEKPSKLI 78

Query: 141 G---------SYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           G         +    + V  +L    +  ++   + E+    + + R   H +     + 
Sbjct: 79  GTISKDKVVINTTPDLFVLYSLFNKGIQKNIKNFVLEVSSHGVDQGRI--HELNFEYGIF 136

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL     +     +K   F E ++K     +N D+S+   L      L  K I+
Sbjct: 137 TNLSRDHLDYHKTMNNYFLSKERFFIENVKKES--VINIDNSYGMRLANNLIKLN-KKIF 193

Query: 249 SFGKSKNADFQLRKWKQ---CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +FG SK A+ ++   KQ    ++ S   +Q+  K      + IG     N++  + I  +
Sbjct: 194 TFGFSKEANVKIINIKQQFLTNKYSEFSLQIANKIHTFKTNVIGEFNLYNLISAICICYL 253

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D+    + +      +GR       +N     +I + Y   P  +K  +  + +I  
Sbjct: 254 KKIDIHKVTEVIKRLPVPDGRMNVINKTINNIQKKVIID-YAHTPDGLKKLLQTIKKI-- 310

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             +G+ + V G   +  +  +    ++A   +
Sbjct: 311 -YQGKILLVFGCGGDRDKGKRKLMGNVANHYA 341


>gi|193214550|ref|YP_001995749.1| UDP-N-acetylmuramate--L-alanine ligase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088027|gb|ACF13302.1| UDP-N-acetylmuramate/alanine ligase [Chloroherpeton thalassium ATCC
           35110]
          Length = 470

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 155/436 (35%), Gaps = 52/436 (11%)

Query: 56  FILHAVQK--GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           FI H      GA ++V          + V    +  IPV   D++LG L +         
Sbjct: 57  FIGHDRDNISGADVIVHSSAVKPEMNEEVQEAFARQIPVIKRDEMLGELMRRKAG----- 111

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               I I G+ GKTTT  M+   L    +     IG  +++      +      V     
Sbjct: 112 ----ICIAGTHGKTTTTTMVGTMLKECHEDPTVIIGGISDYFNGSAVVGNGNYMVIEA-- 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   E       + P I VITT+   HL  +  ++++  A  +    +   G +  
Sbjct: 166 -------DEYDRTFLKLTPTIGVITTLEAEHLDIYKDLDDLKQAFVQFANTVPFYGAVIC 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             D+     +    +    + + ++G +  A+ Q ++     + +   V   GK + ++ 
Sbjct: 219 CIDEPAIAAILPCLN----RRVITYGLTPEAELQAKEVVFHGKTAHFTVTHLGKPLGKLE 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +   L  + D+  +AL+ F     R              +ID+
Sbjct: 275 LKAPGLHNVKNALATVAVGLELGLEFDSICRALASFQAVRRRFHVKYSDGEPNGLMVIDD 334

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  ++A +       P      IAV      +   +Q+F  +  + L+L +   +
Sbjct: 335 -YAHHPTEVRATLEAARLGWPKHH--LIAVF--QPHLFSRTQTFADEFGKALALADEIIV 389

Query: 402 SHVWL--------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           + V+          G     +  A+ +      Y E    +   + +    G +++   +
Sbjct: 390 TDVYASREKAEDFIGVSGDLVVRAVQKAGGKASYIEQKSDIIQQLLNRASAGQMIITMGA 449

Query: 453 NSCGFYRLINLLLEEF 468
                 ++   L+E+F
Sbjct: 450 GDI--TKIAGELVEKF 463


>gi|291559992|emb|CBL38792.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SSC/2]
          Length = 461

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 155/416 (37%), Gaps = 44/416 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     +        +IPV     +LG +      A        IA++G+ GKTTT  
Sbjct: 77  AAINFDTNEEYKEAIRRNIPVMKRATLLGQMMHNYQNA--------IAVSGTHGKTTTTS 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML+  L          G+ +  I V   L  +  ++  G  E  ++   E         P
Sbjct: 129 MLSYIL--------LAGNTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFFP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++I  I   H+  F  +++I  +  E    L   G + +N +    + +     A   
Sbjct: 181 KISIILNIEEDHMDFFKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYA 240

Query: 245 KTIYSFGKSKNA-DFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
               +FG   ++ D+  +     +   +  +   +G+ ++ +  +  G H  +N L  + 
Sbjct: 241 ----TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +  DVDT  K L  F    G  +R+        FT++D+ Y  +P  ++A +    
Sbjct: 297 AAKRIGIDVDTMKKGLLGFT---GAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAK 352

Query: 362 Q---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R IA L D  +   LS   H+ + ++ +        +S     
Sbjct: 353 NYPHNELWCVFQPHTYSRTIAFLDDFAK--ALSLCDHVIVTDIYAAREKDTGIVS---SK 407

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + D +    + VHY +  D +  FI  +    D+++   + +     + N L+  
Sbjct: 408 DIVDRMADYDVDVHYIKEFDDIEKFILKNCKKNDLLITMGAGNV--DSIGNSLVNR 461


>gi|225677128|ref|ZP_03788128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590832|gb|EEH12059.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 514

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/487 (16%), Positives = 151/487 (31%), Gaps = 90/487 (18%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-----------GPH--- 50
               +LL  I    I +     + G++ + + +     F  +            G H   
Sbjct: 1   MKLRELLHNI----IDVNFDIEIKGVTCNPKRVKEGYLFVCVSERSKEYATCDTGIHILP 56

Query: 51  YDGHDFIL---HAVQKGAG-------------LVVVNTDMVASIGSLSIPVFGVD----- 89
            +   ++      V +GA               ++VN           IPV         
Sbjct: 57  TESQCYVHNCVDVVIQGAKKDVIPVLDYLDPENLIVNEHTKQLYNKNWIPVSATCMTNTP 116

Query: 90  --DVLGALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
              VL  LN   +         + +    + A+TG+ GKT+  E       +     A I
Sbjct: 117 GFAVLEHLNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNAASI 176

Query: 141 GSYNNHIGVP---------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           G+    I                  L      + V+  + E     + + R   H ++  
Sbjct: 177 GTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEHLVLESSSHGIDQYRI--HGLKLS 234

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD-DSFFELLKAKSHALG 243
            A  T  +  HL     +      K  +F E L +  T  LN D D +  LLK       
Sbjct: 235 AAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAEKRSN 294

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++GK K +D  L +         + V++  +        +G   A N+L  +GI 
Sbjct: 295 --KVVTYGK-KGSDITLLEQTSTHNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS 351

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +   ++      +       GR ++ +              Y   P+++K     L  +
Sbjct: 352 GLNYREI-----CVEKLVSPPGRMEKVK--------PFAFVDYAHTPSALK---QALLSL 395

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H   + I V G     G   Q+   ++ ++  +Y    V ++  +      A  R   
Sbjct: 396 KWHINKKIILVFGC---GGNRDQTKRSEMGKIAQMY-ADKVIITDDNSRDEDPAKIRHDI 451

Query: 424 VHYSETM 430
           + +    
Sbjct: 452 LLHCPDA 458


>gi|167766034|ref|ZP_02438087.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
 gi|167712114|gb|EDS22693.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
          Length = 463

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 155/416 (37%), Gaps = 44/416 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     +        +IPV     +LG +      A        IA++G+ GKTTT  
Sbjct: 79  AAINFDTNEEYKEAIRRNIPVMKRATLLGQMMHNYQNA--------IAVSGTHGKTTTTS 130

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML+  L          G+ +  I V   L  +  ++  G  E  ++   E         P
Sbjct: 131 MLSYIL--------LAGNTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFFP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++I  I   H+  F  +++I  +  E    L   G + +N +    + +     A   
Sbjct: 183 KISIILNIEEDHMDFFKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYA 242

Query: 245 KTIYSFGKSKNA-DFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
               +FG   ++ D+  +     +   +  +   +G+ ++ +  +  G H  +N L  + 
Sbjct: 243 ----TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +  DVDT  K L  F    G  +R+        FT++D+ Y  +P  ++A +    
Sbjct: 299 AAKRIGIDVDTMKKGLLGFT---GAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAK 354

Query: 362 Q---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R IA L D  +   LS   H+ + ++ +        +S     
Sbjct: 355 NYPHNELWCVFQPHTYSRTIAFLDDFAK--ALSLCDHVIVTDIYAAREKDTGIVS---SK 409

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + D +    + VHY +  D +  FI  +    D+++   + +     + N L+  
Sbjct: 410 DIVDRMADYDVDVHYIKEFDDIEKFILKNCKKNDLLITMGAGNV--DSIGNSLVNR 463


>gi|317499409|ref|ZP_07957676.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893281|gb|EFV15496.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 463

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 155/416 (37%), Gaps = 44/416 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +     +        +IPV     +LG +      A        IA++G+ GKTTT  
Sbjct: 79  AAINFDTNEEYKEAIRRNIPVMKRATLLGQMMHNYQNA--------IAVSGTHGKTTTTS 130

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML+  L          G+ +  I V   L  +  ++  G  E  ++   E         P
Sbjct: 131 MLSYIL--------LAGNTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFFP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++I  I   H+  F  +++I  +  E    L   G + +N +    + +     A   
Sbjct: 183 KISIILNIEEDHMDFFKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYA 242

Query: 245 KTIYSFGKSKNA-DFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
               +FG   ++ D+  +     +   +  +   +G+ ++ +  +  G H  +N L  + 
Sbjct: 243 ----TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +  DVDT  K L  F    G  +R+        FT++D+ Y  +P  ++A +    
Sbjct: 299 AAKRIGIDVDTMKKGLLGFT---GAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAK 354

Query: 362 Q---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R IA L D  +   LS   H+ + ++ +        +S     
Sbjct: 355 NYPHNELWCVFQPHTYSRTIAFLDDFAK--ALSLCDHVIVTDIYAAREKDTGIVS---SK 409

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + D +    + VHY +  D +  FI  +    D+++   + +     + N L+  
Sbjct: 410 DIVDRMADYDVDVHYIKEFDDIEKFILKNCKKNDLLITMGAGNV--DSIGNSLVNR 463


>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
 gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
          Length = 544

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 135/379 (35%), Gaps = 36/379 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V+G++ DS ++ P +   A+ G H  G  F   AV  GA  V+ + +    I +
Sbjct: 64  TDTDVIVHGVTHDSHAVRPGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTDAEGARRIAA 123

Query: 81  L------SIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +       +PV   DD    L      +     +   ++ +TG+ GKTTT  +L   L +
Sbjct: 124 MPPGPPGEVPVLVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRA 183

Query: 133 IKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFL 178
              T   IG+    I                   L    V+   G   + +S        
Sbjct: 184 AGHTTGLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHR 243

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +    AV T ++  HL   S +E+  +AKA +F+   +T    +   D +   L  +
Sbjct: 244 ADALHFAGAVFTNLSQDHLDFHSSMEDYFAAKASLFDP-ARTAVAVIGVADRWGRRLAER 302

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNML 297
                     +F     AD+  R        + +  +   G  +++     G     N L
Sbjct: 303 HPGA-----ITFAVEGPADWTARDVSYGPTGTLLRAEGPDGLRVDLSVPLPGAFNVANTL 357

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L ++  +     TA   +       GR +R      Q F  L+D  +   P ++   +
Sbjct: 358 GALALLVAIGVPPATAAAGIGSLPGVPGRMER--VDAGQPFLALVD--FAHTPDAVTTLL 413

Query: 358 SVLSQISPHGEGRRIAVLG 376
                + P  +GR I VLG
Sbjct: 414 ET---VRPLVKGRVIVVLG 429


>gi|313677380|ref|YP_004055376.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312944078|gb|ADR23268.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 465

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 154/383 (40%), Gaps = 36/383 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLAR 155
           +  V  +L      +A+ G+ GKTTT  M+   L S KK     +G    +    + + +
Sbjct: 102 RSEVLGKLTEGMFTVAVAGTHGKTTTSSMIAHLLKSGKKDIAGFLGGITTNYDTNMIMNQ 161

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E       E       ++P++AV+T+    HL  +  +EE+  + +   E
Sbjct: 162 SDYKKAIIVVEA-----DEFDRSFLTLKPNVAVVTSTDADHLDIYGKLEELKKSFSLFLE 216

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +  +G I++   D  +E +  K          S+G +   D +    +    +   +V 
Sbjct: 217 NVNPSGQIYI--KDGLWEEIATKRIKAKPS---SYGLNAG-DIRALHVQVKDAKFVFDVT 270

Query: 276 LQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           L  K ++       G+H  +N ++ + I + L       ++ +  +   +   +R+   +
Sbjct: 271 LDNKVIKGFQLSVPGFHNVENAVVAIAIANQLGLSDKEILEGIRTYQGVK---RRFEYVI 327

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F  ID+ Y  +P+ +KA ++ +  + P   G++++VL     +   ++ F ++ ++
Sbjct: 328 QRNDFVFIDD-YAHHPSEIKAMLTSVRALYP---GKKVSVLFQ-PHLYSRTRDFAVEFSQ 382

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y    + + G     L +++       Y    D +  ++ +   D +
Sbjct: 383 SLSLADEVMLLDIYPARELPIEGVSSEILLESIQADEK--YKVEKDSIVEYLSN--RDLE 438

Query: 446 VVVVKSSNSCGFYRLINLLLEEF 468
           V +   +      +L+  L E F
Sbjct: 439 VFITMGAGDI--DKLVEPLKEMF 459


>gi|282883226|ref|ZP_06291825.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
 gi|281297038|gb|EFA89535.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
          Length = 462

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 132/369 (35%), Gaps = 36/369 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI+G+ GKT+T  M+   + ++       +G   + I   + + +           L +
Sbjct: 115 IAISGTHGKTSTTSMVAEIIKNLDTDPTIMLGGQLDDINGNIKIGKEKK--------LFL 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   E +     + P  AVI  I   HL  F  I+ I        E L K     +N DD
Sbjct: 167 TEACEYKANILKLFPTTAVILNIDEDHLDYFDNIDHIIRTFKGFTEKLNKDDYCIINIDD 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHG 287
                L    +A     + +F   K AD+  +           +          +V    
Sbjct: 227 ENTRKLLPIDNA----KLITFAIDKKADYMAKNIDFDMYGRPYYDLYYKDKYIGKVELAI 282

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +GYH   N L  +G       D +  IK +  +   +G  +R           ++D+ Y 
Sbjct: 283 LGYHNIYNTLAAIGACHENGIDFEKCIKGIGDY---KGVHRRLEFKGLYKNSRVMDD-YA 338

Query: 348 ANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +K++IS + +           PH   R   +L    +  + S     D+  +  +
Sbjct: 339 HHPTEIKSSISAIKKSCKKRLFTVFQPHTFTRTKLLLDSFAKSFDQS-----DVIIITDI 393

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           Y          H   L DA+     +  Y +    +  +++ +L D D VV   + +   
Sbjct: 394 YAAREKDYGDIHSKTLVDAISNHHKNAIYIKEFSDIIRYLKENLKDDDTVVTMGAGNV-- 451

Query: 458 YRLINLLLE 466
           Y +   LL+
Sbjct: 452 YEIGQELLK 460


>gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 252

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 127 DIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 176


>gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
 gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
          Length = 473

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      +     L IPV+    +L AL             T IA+ G+ GKTTT  M 
Sbjct: 83  AIPETNPELVRARELGIPVWPRAKMLAALGHGC---------TTIAVAGTHGKTTTASMC 133

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  +             I              + + E   S    +      + P +
Sbjct: 134 ATMLDRMGLD---PSFLIGGIVEGYKTNGRNGSGTYFVAEADESDSSFL-----YLEPRV 185

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   HL ++  + EI +  A+    + + G I    DD     L   +     K 
Sbjct: 186 VVVTNVEADHLDHYGSLAEIENTFAQFMSLVGEQGVIVACGDDKQLYELARSTS----KR 241

Query: 247 IYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
           I ++G     D        +C++ S   ++     +  V   H  G H   N    +G+ 
Sbjct: 242 IVTYGFDARNDIVCEVCDDRCAQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D   A +ALS F   EG  +R+    +    T++D+ Y  +P  +KA ++    +
Sbjct: 302 FALGLDTAAAARALSTF---EGVRRRFTRVGDVCGVTVVDD-YGHHPTEIKATLAAARGL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--------VLSLYNISHVWLSGFHVLALK 415
                 R I V+        L                  ++ +++   + + G    AL 
Sbjct: 358 DY----RHIDVVFQPHRYSRLKAFLDDFADAFADADKVVLIDVFSAGEMPIPGVTSKALA 413

Query: 416 D---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           D   A      V Y      L   +++    GD+++   +   
Sbjct: 414 DTVRARHPDKQVSYVSDRMALMERLETITEPGDLLITMGAGDI 456


>gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/533 (15%), Positives = 159/533 (29%), Gaps = 92/533 (17%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS----------IAPQEAFFAIKGPHY 51
             L    +  Q +Q            +   +DSR           +A   AF  +K    
Sbjct: 24  TALKVLPEQAQTLQQILSQPGIDIAFSKFVLDSRQLDNEVNTAPSVAAPAAFVLLKSHTQ 83

Query: 52  ---DGHDFILHAVQKGAGLVVVNTDMVA-----SIGSLSIPVFGVDDVLGALNKL----- 98
                  +   A +K A  ++   D             + P+  V ++   L  L     
Sbjct: 84  PIEKSQQYAQVAAEK-AAFILTEIDPQHLASSTQTAEYACPIIFVANLRDILGSLIQISL 142

Query: 99  ----------AVAARLRSKATIIAITGSVGKTTTKEMLTIALS-------SIKKTYACIG 141
                       +   +    +IA+TG+ GKTT  +++                     G
Sbjct: 143 LPPASLSSLTHSSDLQQQLPQVIAVTGTNGKTTISQLIAQLCQFSNVAQLQNSAVMGTAG 202

Query: 142 SYNNHIGVPLTL-----------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +      V  +             R   D    I  L  S  G  +     V   +AV T
Sbjct: 203 NGRLDSLVQASHTTGDALAVQRFLRQMHDEGVSILALEASSHGLDQQRLQAVLVTVAVYT 262

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            ++  HL     +E+ A AKA +F+     +     +N DD F  L+   +   G K ++
Sbjct: 263 NLSRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAVINADDEFASLMAETARRSGAK-VW 321

Query: 249 SFG----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +            + +A F   K +   E   +EV+     + +    +G     N+L 
Sbjct: 322 LYSLRSEQGTINEIANDAYFVANKIEPSLEGVKIEVETSFGPLILHSPLLGRFNVANLLA 381

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFT---LIDESYNANPA 351
            +  V  L  +++     ++      GR +R         +QG      +    Y   P 
Sbjct: 382 AVAGVMALGIELEDLPALVTKLQGASGRMQRVNVNNDAIDDQGTVLNQGVFIVDYAHTPD 441

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++   ++ L     H  G   A+ G   +  +  +         ++      V L+  + 
Sbjct: 442 ALTQVLTSLKS---HCSGNLWAIFGCGGDRDKGKRPLMAQAGLAVA----DKVVLTSDNP 494

Query: 412 LA---------LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         ++  +    H              +        D+VV+  K 
Sbjct: 495 RSEDPAQILEDMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQDIVVIAGKG 547


>gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica
           CNB-440]
 gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinispora tropica CNB-440]
          Length = 514

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 159/458 (34%), Gaps = 51/458 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              +  V G++  S+ + P + + A+ G    G +F+  A + GA  V+ + D  A+   
Sbjct: 36  GPTEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLTDPDGAAATAE 95

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           + +P+  V D    L  LA        +  T+I +TG+ GKT+T  ++   L +   T  
Sbjct: 96  VDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVESGLRAAGHTTG 155

Query: 139 CIGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            IG+    +G                  +  A     V   + E+    L   R     V
Sbjct: 156 LIGTVETRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGR--VGGV 213

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R  +   T     HL   +   +  +AKA++F+G  +     LN+DD     L       
Sbjct: 214 RFTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDG--RCEVEVLNHDDPALLPLH-----R 266

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLG 301
                YS      A +   +           +    G ++       G H   N L+ + 
Sbjct: 267 PATVTYSAAGDGAATWWADEAGGEGYAQRFTLHGPDGLTLPAGVALPGRHNVANALLAVA 326

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++        TA+  ++      G   R     + G    + + Y     ++ AA++ L 
Sbjct: 327 VLVAAGVAPRTAVAGVADCGGVPG---RLELVPSPGPVRGVVD-YAHKTDAIVAALAALR 382

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           + S    GR I +LG   +     +        V +      V ++  +      A  R+
Sbjct: 383 EFST---GRLICLLGAGGDRDRGKRPLMG----VAAAEGADVVLVTDDNPRTEDPADIRA 435

Query: 422 I---HVHYSETMDGLFL------FIQSSLV---DGDVV 447
                V  ++T   +         I  ++     GDVV
Sbjct: 436 EVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVV 473


>gi|262373760|ref|ZP_06067038.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
 gi|262311513|gb|EEY92599.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
          Length = 481

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 160/426 (37%), Gaps = 53/426 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSK 107
           FI H+    K A ++VV+T +      +        P+    ++LG L +          
Sbjct: 70  FIGHSADNIKNANVLVVSTAIDPENPEIKAAIEQRTPIVRRAEMLGELMRYR-------- 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              IA+ G+ GKTTT  +LT  L+   +  TY  IG   N  GV   L     +  F + 
Sbjct: 122 -HGIAVAGTHGKTTTTSLLTTMLAEENLDPTY-VIGGLLNSTGVNAALG----ESRFIVA 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P  A++T I   H+  +    +++     +    L   G   
Sbjct: 176 EADESDASFL-----YLQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283
           +  DD+    +  +      + + ++G +++ D +    +Q   +S   V  + +  + V
Sbjct: 231 VCGDDANIREILPRV----GRPVLTYGFNEDNDVRAVDVEQDGMRSHFTVLRKDREPLRV 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLI 342
             +  G H   N L  +G+ +          +AL  F     R +      + +G   L+
Sbjct: 287 TINQPGLHNVLNALAAIGVATDEGVSDGAICRALEGFSGVGRRFQVQGEFEVGEGTVKLV 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---- 398
           D+ Y  +P  ++A I      + H + R + +          ++    D  +VLS     
Sbjct: 347 DD-YGHHPKEVEATIKAAR--ASHPDRRLVMMF--QPHRFSRTRDCFDDFVDVLSQVDQL 401

Query: 399 -----YNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVVVK 450
                Y      + G    AL  ++     V     + ++G L   +Q  L   D+++ +
Sbjct: 402 LLLEVYPAGEKPIVGADSRALARSIRLRGQVEPILVDPVEGNLPNVLQKVLQANDLLLTQ 461

Query: 451 SSNSCG 456
            + + G
Sbjct: 462 GAGNVG 467


>gi|325293464|ref|YP_004279328.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061317|gb|ADY65008.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
          Length = 471

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 145/406 (35%), Gaps = 45/406 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +P+    ++L  L +   A         IAI G+ GKTTT  M+
Sbjct: 75  AIKKNNPELIAAREKHLPIVRRAEMLAELMRFRNA---------IAIGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +        G+ +  +     +     +   G  E  +    E       +   +
Sbjct: 126 ATLLEA--------GNLDPTVINGGIINAYGTNARMGEGEWMVVEADESDGTFLKLPADV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +      + 
Sbjct: 178 AVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIE---DRK 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMT 299
           + ++G++  AD +    +    +S  +V+++ +         ++V    G H   N    
Sbjct: 235 VITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFTDLVLPMPGRHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + + L        K L+ F   +   +R+          + D+ Y  +P  +KA ++ 
Sbjct: 295 IAVANRLGISEADIKKGLASFAGVK---RRFTLTGEANGVQVFDD-YGHHPVEIKAVLAA 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSF----H----IDLAEVLSLYNISHVWLSGFHV 411
             +     +GR +AV         LS  F    H     D   +  +Y      + G   
Sbjct: 351 AREA---CKGRIVAV-HQPHRYSRLSSLFDDFAHCFNDADTIILAPVYAAGEDPIEGASS 406

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            AL  A+  + H    + E  + L   +      GD VV+  + + 
Sbjct: 407 EALVSAIKAAGHRDARFLEKREDLASMVAGIANPGDFVVLLGAGNI 452


>gi|302557646|ref|ZP_07309988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
 gi|302475264|gb|EFL38357.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
          Length = 462

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 163/453 (35%), Gaps = 47/453 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVF 86
           D+R  A  +A  A+    + GH      +   A  VVV++ +      L       IPV 
Sbjct: 40  DARDSATADALRALGATVHIGH--AAGHLADDASCVVVSSAIREDNPELVRAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L AL               IA+ G+ GKTTT  ML ++L+++ +           
Sbjct: 98  HRSDALAALMD---------GLRPIAVAGTHGKTTTTSMLAVSLTALGR--------EPS 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L     +   G  E+ ++   E     H   P +A+I  +   H +N++ +EEI
Sbjct: 141 YAIGGDLDAPGSNALHGGGEIFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMEEI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +       +   GT+ ++ D      L  +    G     ++G+S +AD ++      
Sbjct: 201 HQSFETFVGRVVPGGTLVISADHEGARELTRRLD--GSVRTVTYGESADADVRVLSVVPQ 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +S + V+L G  +       G H A N +  L   + L         AL+ +   +  
Sbjct: 259 GLRSEVTVELDGAPLTFTVSVPGRHYAHNAVAALAAGAALGIPAAELAPALAAYTGVK-- 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R +         ++ +SY  +P  M A +  +   +      RI V+     +   ++
Sbjct: 317 -RRLQLKGEAAGVQVV-DSYAHHPTEMTADLEAMRAAAGDA---RILVVFQ-PHLFSRTR 370

Query: 387 SFHIDLAEVLSLYNISHV---------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLF 436
               ++ + LSL + S V          + G     + +A       V        +   
Sbjct: 371 ELGKEMGQSLSLADASVVLDIYPAREDPIPGVTSELIIEAARAAGADVTAVHDQAEIPEV 430

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           +      GD+V+   +       L   +L+  P
Sbjct: 431 VAGMAKPGDLVLTMGAGDV--TDLGPRILDRLP 461


>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
 gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
          Length = 272

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 83/248 (33%), Gaps = 34/248 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAVQK 63
             +L   +            + G+ +DSR I   + F     I G   D H F+  AV+ 
Sbjct: 17  LKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKN 76

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTT 121
           GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GKTT
Sbjct: 77  GAVALIVERDINIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTT 131

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFGIF 165
           T  ++   LS        +G+    +             P TL R        + D+ + 
Sbjct: 132 TSYLIEKILSDYGYHMGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVM 191

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EK 219
           E+    L             IAV T +   HL      +E    K+ +F  L        
Sbjct: 192 EVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLSTTD 249

Query: 220 TGTIFLNY 227
                LN 
Sbjct: 250 KKIAVLNA 257


>gi|170744732|ref|YP_001773387.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium sp. 4-46]
 gi|229620047|sp|B0UFC6|MURC_METS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168199006|gb|ACA20953.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium sp. 4-46]
          Length = 471

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 152/437 (34%), Gaps = 57/437 (13%)

Query: 44  FAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALN 96
            A KG   + GH    +  +  A LVVV+T +      L       +PV    ++L  L 
Sbjct: 48  LAEKGIRTFVGHR-AENLAE--AELVVVSTAIRRDNPELAMARERRLPVVRRAEMLAELM 104

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +             +A+ G+ GKTTT  ++   L +       I      I    T ARM
Sbjct: 105 RFKSC---------VAVAGTHGKTTTTSLVATLLDAGGLDPTVIN--GGIINAYGTNARM 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               ++ + E   S    ++     +   IA++T I P HL +F   + I  A     + 
Sbjct: 154 GEG-EWMVVEADESDGTFLK-----LPADIAIVTNIDPEHLDHFGSFDAIKDAFRAFIDN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  D    + L  +      + I ++G++  AD +L        QS   V +
Sbjct: 208 IPFYGFAVMCIDHPTVQDLVGRIE---DRRIITYGENPQADVRLIDVDLRGGQSRFRVMI 264

Query: 277 QGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +         ++V    G H A N    L +   L    +   +AL+ F   + R  R
Sbjct: 265 RDRRPGFRLEMEDLVLPMPGKHNALNATAALAVAHELGVAPEAIRRALAGFGGVKRRFTR 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCE 380
                 +     I + Y  +P  +KA +              + PH   R  ++  D C 
Sbjct: 325 ----TGEWNGAQIFDDYGHHPVEIKAVLKAARASTEGNVVAVVQPHRYTRLASLFDDFCT 380

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQ 438
               + +       V  +Y      + GF    L   L    H +    E  + L   + 
Sbjct: 381 CFNDADT-----VIVAPVYAAGEAPIEGFDRDTLVAGLKSRGHRNAVALERSEDLAGLVN 435

Query: 439 SSLVDGDVVVVKSSNSC 455
             +  GD VV   + + 
Sbjct: 436 GLVGPGDYVVCLGAGNI 452


>gi|300813921|ref|ZP_07094225.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511984|gb|EFK39180.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 261

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 21/262 (8%)

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-- 253
           HL  F  IE I + K E+ E L + G    NYD+ + + L  K+     K  Y +G    
Sbjct: 2   HL--FKTIENIQNTKYELIEDLPEDGIAIFNYDNDYVKPLADKTK----KKTYRYGIKDI 55

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +  D   +  +   + S   + ++G   +      +G H   N+L       +L  +++ 
Sbjct: 56  EKLDVYAKDIRVNEKGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQ 115

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +      E    R     +   + +ID+++N+NP   +AA+SV+ +     EG++I
Sbjct: 116 IKNGIEKVKAVE---HRLNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKI 169

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYS 427
            +   M E+G + +  +  +   ++     +V L G  +      AL D       +   
Sbjct: 170 IITPGMVELGAIEEEENYKIGIEIAKV-CDYVILVGQKISAPIKRALIDNNFNEDRIFTV 228

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           ++++     +      GDVV+ 
Sbjct: 229 KSLNDGTSKLVEIAKAGDVVLF 250


>gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 514

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 172/475 (36%), Gaps = 47/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L+        G +    V G ++ S ++ P + +  + G +  G  +   A + GA 
Sbjct: 19  LAQLVALFGLDVRGDLDGVEVTGAALASSAVEPGDLYVGVPGRNAHGAAYAAAAAEAGAV 78

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            V+ + D      +  +P+    D   AL  +A          AT+  +TG+ GKT+   
Sbjct: 79  AVLTDGDGADLAAAAGLPIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKTSVVY 138

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVD-VDFGIFELG 168
           +L   L  +        +    IG                   LARM  + V     E+ 
Sbjct: 139 LLYAILGQLGIVAGLTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAAIEVS 198

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     +   +A  T ++  HL +++ + +  +AK E+F+       +    D
Sbjct: 199 AQALS--RHRVDGIEFDVAGFTNLSHDHLDDYTAMPDYFAAKLELFQPDRARRGVVT-VD 255

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
             +   L  +S      T  S      AD+++   ++   ++   ++  G   +E     
Sbjct: 256 SEWGHRLVEQSRIP--VTTLSSVAGSEADWRVTVLEETLARTAFALEGPGGRLLETSVPL 313

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDES 345
           +G + A N  + + ++     D+D    AL      +    G+  R + ++G    ID  
Sbjct: 314 LGAYNASNAALAIVMLVESGYDLDAIGAALERDGGIDAYIPGRAERLSGDRGPVVFID-- 371

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +  + ++ L +++    GR + V G     G+   +   ++  + +      V 
Sbjct: 372 YGHTPDAFSSTLAALRRVTA---GRIVMVFGA---DGDRDITKRAEMGAIAA-RGADAVV 424

Query: 406 LSGFHVL---------ALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++ FH           AL +    ++    ++        F    S   +GDVV+
Sbjct: 425 ITDFHPRWEDPATIRAALLEGARNAVPERDLYEVPDPRTAFRTALSLAGEGDVVL 479


>gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM
           43827]
 gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 466

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 169/450 (37%), Gaps = 44/450 (9%)

Query: 33  DSRSIAPQEAFFAIK--GPHY-DGHDFIL-HAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           DSR++       A++  G H   GHD      +  G   VVV+T +      L   V   
Sbjct: 39  DSRTV------LALRAQGAHVAVGHDGANLDQLDGGPTAVVVSTAIREDNPEL---VAAR 89

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +  +  L +    A L     +  + G+ GKT+T  MLT+AL   +         +    
Sbjct: 90  ERGVAVLRRAEALAALMLDHRVACVAGTHGKTSTTSMLTVALQHCR--------MDPSFA 141

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +   L     +   G   + ++   E         P +AV+T +   HL +   +E   +
Sbjct: 142 IGGDLNESGANAHQGAGGVFVAEADESDGSFLFFAPSVAVVTNVEADHLDHHGTVEAYVA 201

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQC 266
              E  E +E  G +    DD     L  ++   GI+ +  +G++   +    L + +  
Sbjct: 202 VFDEFLERIEPGGVLIACADDEGSAALADRAEKRGIR-VRRYGRAATGEGAAVLVEHRPD 260

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                  V+L G+ ++V     G HMA N +  L     L AD    ++ L+ F    G 
Sbjct: 261 GAGGLAVVELDGERLDVRVAVPGEHMAGNAVAALLAAVELGADRWGVLEGLAAFG---GV 317

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R+          + D+ Y  +P  + A +     ++   +GR + V      +   ++
Sbjct: 318 RRRFEFKGVAAGVRVYDD-YAHHPTEVAAQLKAARPVAG--DGRLVVVF--QPHLYSRTK 372

Query: 387 SFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLF 436
           +F  +  +         VL +Y        G     + DA+P  +  V +  + D +   
Sbjct: 373 TFAAEFGKALALADEVVVLDVYGAREDPEPGVTGELVADAVPLEAGRVRHVPSFDRVPEL 432

Query: 437 IQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
           +   + +GD+VV   +         +++ L
Sbjct: 433 VAGLVREGDLVVTMGAGDVTMLGPVIVDAL 462


>gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae OXC141]
          Length = 481

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 165/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLCLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
 gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
          Length = 549

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 176/496 (35%), Gaps = 62/496 (12%)

Query: 7   FHDLLQAIQ----GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             DL   +     G     + Q  ++G+S+DS  +AP E F A+ G    G +F   AV 
Sbjct: 22  LADLAHTLSLEAAGDPAADLGQVLIHGVSVDSGDVAPGELFVALPGFRRHGAEFAAQAVA 81

Query: 63  KGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
            GA  V+ + D    +G+    +PV    D    +  LA        +  T  A+TG+ G
Sbjct: 82  GGAVAVLTDADGATRLGASLGQVPVLTHPDPRAVVGPLAAEVYHHPATHLTTTAVTGTNG 141

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDF 162
           KTTT   L   L++        G+    +G                  +    +   V  
Sbjct: 142 KTTTTYFLQSILAAHLGQCMIAGTVELSVGTQSVESPRTTVEAPVLQRMMALAVEEGVKA 201

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E   SH   +  L   V   +A  T +   HL     +EE   AKA +F   E    
Sbjct: 202 ASLEAS-SHAIVLHRLGGTVV-DVAGFTNLQRDHLDFHHTMEEYLEAKARLFTP-EHARR 258

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSF---------GKSKNADFQLRKWKQCSEQSWME 273
             +  DD +   L  +    G   +              ++ A + + + K    Q+   
Sbjct: 259 AVICVDDRWGAALAERVADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMTQAATT 318

Query: 274 VQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             L    G+ +E +    G    QN  + L +        DTA++AL+  H   GR +R 
Sbjct: 319 FTLHGPDGEQIEALCPLPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPGRMQRI 378

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +    ++D  +   P +M  A+  + +I+P   GR I V G     G+  Q    
Sbjct: 379 SQRDGRRGTCIVD--FAHTPEAMDLALKAVREITP---GRLIVVFGS---DGDRDQGKRP 430

Query: 391 DLAEVLSLYNISHVWLS----GFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDG 444
            L +V +      V             ++DA+   +       E ++ +  +   ++  G
Sbjct: 431 LLGQVAARLADVLVVTDENPRSEDPQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRG 490

Query: 445 -------DVVVV--KS 451
                  D V+V  K 
Sbjct: 491 VELCGPQDTVIVTGKG 506


>gi|332977769|gb|EGK14529.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp.
           1501(2011)]
          Length = 476

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 158/426 (37%), Gaps = 46/426 (10%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAA 102
             + GHD     +   A ++VV++ +  +   +       +PV    D+LG L +     
Sbjct: 66  EVFIGHD--SKNIAN-ADVIVVSSAIDRNNPEIQAALKAQLPVVRRADMLGELMRYR--- 119

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                   IA+ G+ GKTTT  +LT+ ++        +      IG  L  +     +  
Sbjct: 120 ------HGIAVAGAHGKTTTTSLLTMMMTEAGLDPTYV------IGGKLNASGKNASLGE 167

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
             + +  +   +  FLT  + P  A++T I   H+  +    +++ +A  +  + +   G
Sbjct: 168 SRYLIAEADESDASFLT--LHPMAAIVTNIDQDHMETYGNSFDKLKAAYIQFLQNMPFYG 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KS 280
              +  DD     +         + + ++G   + + Q    +    ++   V  +  + 
Sbjct: 226 LAVVCGDDKELYSMIDDI----GRPVLTYGFEPHNNVQATDVRVEGTKTHFTVLRKDHEP 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++  +  G H   N L  + + +    D +   +AL+ F     R ++  C        
Sbjct: 282 LQLTLNIPGQHNVLNALAAITMATDEGVDDEAIKRALAKFAGVGRRFEQQACVKKDEGDV 341

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
           L+ + Y  +P  + A I    +  P    RR+ +L         ++  + D   VLS   
Sbjct: 342 LLIDDYGHHPVEVAATIKAARESYPE---RRLVMLFQ-PHRYTRTRDCYDDFVAVLSQVD 397

Query: 399 -------YNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK 450
                  Y+     + G    +L  ++     V       D L   +Q  L  GD+++ +
Sbjct: 398 ELMLLDVYSAGETPIVGADTKSLARSIRLRGEVEPMVIDKDELAPAMQRILKAGDILITQ 457

Query: 451 SSNSCG 456
            + + G
Sbjct: 458 GAGNVG 463


>gi|295089862|emb|CBK75969.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 465

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 147/415 (35%), Gaps = 45/415 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+     +P+     +LG + +    A        IA++G+ GKTTT  M
Sbjct: 83  AAIHPDNPEFAAAREAGLPMLSRAVLLGEMMRNYREA--------IAVSGTHGKTTTTSM 134

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   L++       +G     IG  +           G  E  ++   E         P
Sbjct: 135 LSEIFLAAEADPTISVGGILPSIGGNI---------RVGGPEFFITEACEYTNSFLEFFP 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VI  I   H+  F  + +I S+     +   K G + +N +   ++ +   +     
Sbjct: 186 TIEVILNIEEDHMDFFKDLADIRSSFTRFAKKTPKQGAVVINGEIEDWQEIVKNTEG--- 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302
             + +FG  +  D+   +    S  +   +  ++G+  + +  G+ G H   N L     
Sbjct: 243 -RVITFGTDRGFDYSAGEISYDSLARPTFDFYIRGEKQDTLSLGVSGEHNVYNALAAAAA 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  ++   + L  F   +   +R+         T+ID+ Y  +P  ++A++     
Sbjct: 302 ALEAGLSLEAVKRGLLSFTGTK---RRFEKKGVLNGVTIIDD-YAHHPQEIRASLKTAQN 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLA 413
              +   R   V          +++F  + AE         +  +Y        G     
Sbjct: 358 YPHN---RIWCVF--QPHTYTRTKAFLDEFAEALSMADCIVLADIYAARETDTLGISSRD 412

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + + + R    V Y  T + +  F++ S + GD+++   +       +   LL E
Sbjct: 413 IAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGDLLITMGAGDI--VNVGEALLAE 465


>gi|190892582|ref|YP_001979124.1| UDP-N-acetylmuramate--alanine ligase [Rhizobium etli CIAT 652]
 gi|190697861|gb|ACE91946.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 471

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 153/415 (36%), Gaps = 53/415 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  S   L       +PV    ++L  L +   A         IAI G+ G
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFRNA---------IAIGGTHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L +       I      I    T ARM    ++ + E   S    ++  
Sbjct: 118 KTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-EWMVVEADESDGTFLK-- 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +
Sbjct: 173 ---LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGYH 291
                 + I ++G++  AD + +  +    +S  +V+++ +    V           G H
Sbjct: 230 IE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + + + L        K L+ F   +   +R+          + D+ Y  +P 
Sbjct: 287 NISNATAAIAVANRLGISSADIAKGLASFGGVK---RRFTLTGEWNGVQIFDD-YGHHPV 342

Query: 352 SMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNIS 402
            +KA   VL       +GR IAV        L  + E  E +  F+  D   +  +Y   
Sbjct: 343 EIKA---VLRAAREACKGRIIAVHQPHRYSRLASLFE--EFAACFNDADSIFLAPVYAAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G    +L   +    H    +  + + L   +      GD VV+  + S 
Sbjct: 398 EDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAGSI 452


>gi|255262234|ref|ZP_05341576.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
 gi|255104569|gb|EET47243.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
          Length = 466

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 147/422 (34%), Gaps = 52/422 (12%)

Query: 48  GPHYDGHDFI--LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           G + DG + I    A++ G            +  +  +P+    ++L  L +L       
Sbjct: 66  GENLDGAEVIVISSAIKPGNA-------EYDAARAKGLPIVRRAEMLAELMRLKSN---- 114

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  M++  L +       I   N  I             D+ + 
Sbjct: 115 -----VAVAGTHGKTTTTTMVSALLDAGGIDPTVI---NGGIIHAYGSNARVGQGDWMVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S         + +   IAV+T I P H+ ++   + +     +    +   G    
Sbjct: 167 EADESD-----GTFNRLPATIAVVTNIDPEHMEHWGSFDNLRQGFLDFVSNIPFYGLAVC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---E 282
             D    + L  K   +  + + ++G +   D +          ++ ++QLQ +      
Sbjct: 222 CTDHPEVQALVGK---ITDRRVVTYGFNAQVDVRAINLSYKDGSAYFDIQLQSEDQVIEG 278

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H   N L  + +   L    +    AL  F       +R+         T+I
Sbjct: 279 CMLPMPGDHNVSNALAAVAVSRHLGMKSEEIKTALENFGGVN---RRFTRVGKVNGVTII 335

Query: 343 DESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           D+ Y  +P  + AA+          V++   PH   R   +  D C  G  + +   D+A
Sbjct: 336 DD-YAHHPVEIAAALKAARQACDGRVIAVHQPHRYSRLHDLFDDFC--GCFNDA---DVA 389

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKS 451
            +  ++      + G     L   + RS H H    +  + L   ++     GD+VV   
Sbjct: 390 AIAEVFAAGEDPIEGASRDDLVAGMIRSGHRHARSILGEEDLERLVREQTKPGDMVVCLG 449

Query: 452 SN 453
           + 
Sbjct: 450 AG 451


>gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 481

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 145/393 (36%), Gaps = 35/393 (8%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYN 144
            V   L   ++    A L      +A+ G+ GKT+T  ML  ALS       Y   G   
Sbjct: 100 AVKRGLRVAHRSTALAALMRGRFSVAVAGTHGKTSTAAMLVSALSGAGMSPDYVIGGRVG 159

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G  L       +    + E   S    + +     +P + VIT I   HL  +  ++
Sbjct: 160 GRSGTGL------GETSTIVVEADESDGSLVAY-----QPDVVVITNIDADHLDQYEDVD 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A A A   E    TG + +  DD     +     A GI+ +++FG+   AD  +R   
Sbjct: 209 TLARAFAGFAERAGTTGFVVMPEDDPHSRWVTRYLRAKGIR-VFTFGEGSPADLSIRLES 267

Query: 265 QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +         +        V     G HMA+N    L     L A    A+  L+ +   
Sbjct: 268 ELPGSVRFTARFRDDDEAAVEVPVPGSHMARNAGAALLTAVKLGASRSGAVLGLAQY--- 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G G+R+          + D+ Y  +  S++A+++ L + +    GR IAV  + C    
Sbjct: 325 PGVGRRFELKGEPRGIRVYDD-YACHHTSIRASLTALRRTA--MGGRLIAV-AEPCRQYR 380

Query: 384 LSQSFHIDLAEVLSLY---------NISHVWLSGFHVLALKDALPRSIHVHY-SETMDGL 433
           L+Q F  ++A+ L++          +    +       AL   +    H  Y + T D  
Sbjct: 381 LAQ-FQAEIADALAVADRVVVLPVFDADRSFDHCAPAEALTSLVNLPGHDKYLARTPDAA 439

Query: 434 FLFIQSSLVDGDVVVVKSSNSCG--FYRLINLL 464
              +      GD+VV   +        +++  L
Sbjct: 440 ARAVGQFARPGDLVVTLGAPGMARTAEQIVETL 472


>gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 477

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 144/408 (35%), Gaps = 41/408 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +    +IPV    D+LG L          + +T + I G+ GKT+T  M
Sbjct: 78  AAIPQDNPELVAAREQNIPVIRRSDLLGEL---------MTGSTQVLIAGTHGKTSTTSM 128

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +A+ +     ++A  G  N       T A       F + E   S    +R+      
Sbjct: 129 AVVAMQAAGMDPSFAIGGQLNK----AGTNAHQGSGHCF-VAEADESDASLLRY-----S 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I P HL  F   E       +    L  TG + +  DD     L  +     
Sbjct: 179 PDIAVVTNIEPDHLDFFHTPEAYFQVFDDFASRLTDTGVLVVCLDDEHAAALGERQKTK- 237

Query: 244 IKTIYSFGKSKNADFQ-------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             T+  +G +  A+         +       + S   +++  + +EV     G HM  N 
Sbjct: 238 -VTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKA 355
              L    +   DV    + +S F     R + +       +    + + Y  +P  ++A
Sbjct: 297 AAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRA 356

Query: 356 AISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLA 413
            ++   + ++  G G+ I V      M   +Q F  + AE LSL + + V  + G     
Sbjct: 357 VLTAAREKLAARGSGQVIVVF--QPHMYSRTQEFAAEFAEALSLADAAVVLDIYGAREQP 414

Query: 414 LKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 + I       V +      +   +      GD+V+   +   
Sbjct: 415 HDGITSQLIIDRMTNKVVHQPNFSLVPQTVAELAHPGDMVITMGAGDV 462


>gi|42524578|ref|NP_969958.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
 gi|48428296|sp|P61676|MURC_BDEBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39576787|emb|CAE80951.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
          Length = 453

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 124/416 (29%), Gaps = 51/416 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      ++   +  IP+    + L  + +L            IA+ G+ GKTTT  M
Sbjct: 72  SAIQYGNPEISEARARQIPLIPRAEALAEIMRLKRG---------IAVAGTHGKTTTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            +              + +  I +      +      G  E  ++   E     H + P 
Sbjct: 123 TSAIF--------LEANLSPTIVIGGRFELIKSTAMLGSGEWLVAEADESDGSFHKLSPE 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I   HL +F   E +  +  +    +   G + +  DD     +         K
Sbjct: 175 IAIITNIDSDHLEHFKTFENVQKSFHDFALKVPFYGKVIVCGDDPLVRQIFENFP----K 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLM 298
            I  +G  +  D  +       E     V    + +       E      G H A N + 
Sbjct: 231 RILFYGFDEKNDLVV-----TGEHGHYAVHRNDRLLGTKHLVGEFDLKVPGRHNALNAVA 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +           T  K        EG  +R+     +    + D+ Y  +P  ++A + 
Sbjct: 286 AICAGVAAGIPFATCAKG---LQRYEGVDRRFHFKGEKKGIKVYDD-YGHHPTEVRAVLQ 341

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWLSGFH 410
              +       +R+ V             +H         D   +  +Y      + G  
Sbjct: 342 AFRE---KYPKQRLVVFFQPHRYSRTQHCWHDFTTAFMEADQVLLTDIYPAGEAPIPGVT 398

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFY-RLINLL 464
              L   +      ++    D     I   L +GDV V   +         ++N L
Sbjct: 399 SEKLASEMKHEHAQYFVRD-DKATQKILGMLKEGDVFVTLGAGDGWKLGLEVLNQL 453


>gi|212213338|ref|YP_002304274.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuG_Q212]
 gi|226706320|sp|B6J2Q2|MURC_COXB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212011748|gb|ACJ19129.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 465

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 155/419 (36%), Gaps = 45/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +     IP+    ++L  L K             IA+ G+ GKTTT  M
Sbjct: 75  SAIGATNPELMAAKQAKIPLLKRGEMLANLMKEY---------QSIAVAGAHGKTTTSGM 125

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L+ A   +++  T+   G  NN        ++ P  V  G + +  +   +  FL   + 
Sbjct: 126 LSHAFVEANLDPTFMVGGVLNN--------SQTPARVGNGHYFIAEADESDASFL--FMH 175

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P IAV+T I   HLS +      +     +  E   + G + L  DD     +      L
Sbjct: 176 PDIAVVTNIDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLDDPILREIA----PL 231

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTL 300
             + + ++G S +A +++  + Q   QS  ++    +   + V     G H A N     
Sbjct: 232 LSRRVITYGFSSDAQYRVVDYCQQGIQSLFQIHSPQRKAPLTVKLSMPGQHNALNATAVT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I  ++  +    +K+L+ F   + R       +      LI E Y  +P  +KA ++  
Sbjct: 292 AIADVVQMNEPALLKSLADFPGVDRRFTIRGEMILPKGNALIIEDYGHHPNEIKATLAAA 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA 417
               P    R + V          ++    +   VL+  +   +  V+ +G   +   D 
Sbjct: 352 RAAWPE--RRMVLVF--QPHRYSRTRDLMTEFVSVLAETDWLVLLEVYSAGEMPIPGADG 407

Query: 418 LPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +          +    +   +  L   +Q      D+++++ + + G   ++  L++ +
Sbjct: 408 MALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPNDIIILQGAGNIG--SIVTALVQTY 464


>gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum R]
 gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 521

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 97/494 (19%), Positives = 156/494 (31%), Gaps = 63/494 (12%)

Query: 6   TFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDF 56
           T  DL + I G   G         V +  +  I +DS S+      F A+ G    G  F
Sbjct: 4   TLLDLTKLIDGILKGSAQGVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQF 63

Query: 57  ILHAVQKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIA 112
                   A  ++ +     V +    + PV  VDDV   L   +           T+I 
Sbjct: 64  AGTDNAAKAVAILTDAAGLEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIG 123

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------- 157
           +TG+ GKTTT  +L   L         IG+    I       ++                
Sbjct: 124 VTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMR 183

Query: 158 -VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              V   + E+    L   R         +A  T ++  HL     +++   AKA  F  
Sbjct: 184 DHGVTHVVMEVSSHALSLGR--VAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRA 241

Query: 217 LEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWME 273
                     +  DDS+ + +   S A  ++T+ + G  + ADF               +
Sbjct: 242 DSPLVADKQVVCVDDSWGQRMA--SVAADVQTVSTLG--QEADFSATDINVSDSGAQSFK 297

Query: 274 VQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +     +S +V     G     N  +     + +  D +   + +S        G+  R 
Sbjct: 298 INAPSNQSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSK---VAVPGRMERI 354

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGEL 384
              Q F  ++D  Y   PA++ A +  L       +GR   V+G   +        MG+L
Sbjct: 355 DEGQDFLAVVD--YAHKPAAVAAVLDTLRT---QIDGRLGVVIGAGGDRDSTKRGPMGQL 409

Query: 385 SQSFHIDLAEVLSLYNISHVW-----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           S     DL  V      S V                    R + V            +  
Sbjct: 410 SAQ-RADLVIVTDDNPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVE 468

Query: 440 SLVDGDVVVV--KS 451
               GD +VV  K 
Sbjct: 469 WAQPGDGIVVAGKG 482


>gi|158334963|ref|YP_001516135.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
 gi|189028946|sp|B0CCD6|MURC_ACAM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158305204|gb|ABW26821.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
          Length = 487

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 157/414 (37%), Gaps = 47/414 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-- 130
               +      P+F   DVL AL +             IAI G+ GKTTT  ++   L  
Sbjct: 90  PEYQAAVQAGCPIFHRSDVLAALMQEF--------PQSIAIAGTHGKTTTSSLVGYLLLQ 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +S+  T    G      G   T      +  + + E   S    ++F      PHI VIT
Sbjct: 142 ASLDPTIIVGGEVAAWGGNART-----GESPYLVAEADESDGSLVKFF-----PHIGVIT 191

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H  +++ ++++ S   E  +      T+ ++ D                   YS 
Sbjct: 192 NIELDHPDHYTSLDQVVSIFQEFVDHCH---TLIVSVDCPTIADRFLALATDQSMITYSL 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               +AD+ ++      + + +EV  +G+S+ ++    +G H   N L  + +   +  +
Sbjct: 249 SSKVSADYTVQNIDYSGQGTIVEVLERGESLGQLELPLLGEHNLSNALAAVAVGRYVGLE 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-----SVLSQIS 364
                KAL  F    G  +R+          LID+ Y  +P+ ++  +        +  +
Sbjct: 309 FPAIAKALRTFS---GAKRRFEIYGEAQGICLIDD-YAHHPSEIQVTLASAKLQAQAAAA 364

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLALK 415
            + + R +AV          + +F  + ++     +   ++ ++ +G       +   L 
Sbjct: 365 TYSQSRVVAVF--QPHRYSRAATFFQEFSQSFQDADLVVVTDIYSAGEANPGTINGKKLA 422

Query: 416 DALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           DA+  +   V +  T+  +  F+Q  L  GDVV+   +      R+I  LL  F
Sbjct: 423 DAIAANHSVVTFQPTLTNVIDFLQGHLQSGDVVLFLGAGD--LNRIIPDLLTHF 474


>gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 464

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 146/407 (35%), Gaps = 49/407 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           + GH      +     LVVV+T +      L       IPV         +++  + ARL
Sbjct: 64  FIGHR--EENLASDVSLVVVSTAVSQDNPELLKAKRLGIPV---------MHRGELLARL 112

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             +   IA+ G+ GKTTT  M+   L            ++  I V   +  +  +   G 
Sbjct: 113 MQEKKGIAVAGTHGKTTTSSMIAYVLEKEG--------FDPVIAVGGEIVDLGYNAKAGQ 164

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E  ++   E       + P+ AVIT I   HL  +   EEI  A  +  + +   G   
Sbjct: 165 GEYMVAEADESDGSFLKLLPYAAVITNIEADHLDYYQSFEEIKKAFKKFADNIRPEGFGV 224

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
             +D+     +         K  +++G S  +DF LR +++   Q    +  +     E+
Sbjct: 225 FCWDNLQVREMLKGYK----KRKFTYGFSPGSDFMLRDYREEQNQLVANIYYKNTLEGEL 280

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N      ++  +                  G  +R++    +    LI 
Sbjct: 281 RLKVPGKHNILNAAAATAVLRNIGLSFKAI---SERLLEFNGAKRRFQILGERNG-ALIV 336

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS------ 397
           + Y  +P  ++A +      +   + R + V+         +  F+ + A VL       
Sbjct: 337 DDYAHHPTEVEATLRA----AKLYKDRDVLVVFQ-PHRYTRTHFFYKEFARVLVDAEKVV 391

Query: 398 ---LYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
              +Y+     + G     + + + +   +  Y E++D ++ +++ +
Sbjct: 392 LTGIYSAGEKPIPGVSGEMIAEEMKKLGKNPLYLESLDEVYNYLEQN 438


>gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 477

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 144/408 (35%), Gaps = 41/408 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +    +IPV    D+LG L          + +T + I G+ GKT+T  M
Sbjct: 78  AAIPQDNPELVAAREHNIPVIRRSDLLGEL---------MTGSTQVLIAGTHGKTSTTSM 128

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +A+ +     ++A  G  N       T A       F + E   S    +R+      
Sbjct: 129 AVVAMQAAGMDPSFAIGGQLNK----AGTNAHQGSGHCF-VAEADESDASLLRY-----S 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I P HL  F   E       +    L  TG + +  DD     L  +     
Sbjct: 179 PDIAVVTNIEPDHLDFFHTPEAYFQVFDDFAARLTDTGVLVVCLDDEHAAALGERQKTK- 237

Query: 244 IKTIYSFGKSKNADFQ-------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             T+  +G +  A+         +       + S   +++  + +EV     G HM  N 
Sbjct: 238 -VTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKA 355
              L    +   DV    + +S F     R + +       +    + + Y  +P  ++A
Sbjct: 297 AAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRA 356

Query: 356 AISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLA 413
            ++   + ++  G G+ I V      M   +Q F  + AE LSL + + V  + G     
Sbjct: 357 VLTAAREKLAARGSGQVIVVF--QPHMYSRTQEFAAEFAEALSLADAAVVLDIYGAREQP 414

Query: 414 LKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 + I       V +      +   +      GD+V+   +   
Sbjct: 415 HDGITSQLIIDRMTNKVVHQPNFSLVPQTVAELAHPGDMVITMGAGDV 462


>gi|50086473|ref|YP_047983.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. ADP1]
 gi|59798249|sp|Q6F704|MURC_ACIAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49532449|emb|CAG70161.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ADP1]
          Length = 482

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 134/393 (34%), Gaps = 43/393 (10%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV    ++LG L +             IA+ G+ GKTTT         S+  T   
Sbjct: 103 ENRIPVVRRAEMLGELMRYR---------HGIAVAGTHGKTTTT--------SLLTTMLA 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             + +    +   L R  V+   G     ++   E       ++P  A+IT +   H+  
Sbjct: 146 EENMDPTYVIGGLLNRTGVNAALGASRFIVAEADESDASFLYLQPMAAIITNVDADHMDT 205

Query: 200 FS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           +    +++     E    L   G   +  DD     +  +      +   ++G +++ D 
Sbjct: 206 YGGSFDKLKDTFVEFIHRLPFYGLAVVCGDDHNVREIMPRF----GRPTLTYGFNEDNDI 261

Query: 259 QLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +     Q   QS   V  + +  + +  +  G H   N L  +G+ +          +AL
Sbjct: 262 RAVDVVQEGMQSHFTVLRKDREPLRLTVNQPGLHNILNALAAIGVATDEGVSDAAIARAL 321

Query: 318 SVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPH 366
             F     R +      L +G   L+D+ Y  +P  ++A I    Q            PH
Sbjct: 322 EGFSGVGRRFQVQGEFELGEGSVKLVDD-YGHHPKEVEATIKAARQSHPDRRLVMMFQPH 380

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH- 425
              R      D  E+             +L +Y      + G     L  ++     V  
Sbjct: 381 RFSRTRDCFDDFVEVLSQVDQL-----LLLEVYPAGEKPIVGADSRTLARSIRLRGDVEP 435

Query: 426 -YSETMDG-LFLFIQSSLVDGDVVVVKSSNSCG 456
              + ++G L   IQ  L   D+++ + + + G
Sbjct: 436 ILVDPVEGNLPNIIQKVLQPNDLLLTQGAGNVG 468


>gi|104774360|ref|YP_619340.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514455|ref|YP_813361.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274813|sp|Q049E9|MURC_LACDB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123251855|sp|Q1G9A0|MURC_LACDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|103423441|emb|CAI98322.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093770|gb|ABJ58923.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126159|gb|ADY85489.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 439

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 123/361 (34%), Gaps = 49/361 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T I + GS GKT+T  +L   L     T   IG           + +   D  F ++
Sbjct: 104 QQYTSIGVAGSHGKTSTTGLLATVLGEAAPTSFLIGDG---------MGKGVKDSRFFVY 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P   ++T +   H   F   ++ ASA     +  +K   +F+
Sbjct: 155 EA-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKG--LFV 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD   + +  K+        Y++G   + DFQ     + +E +   V+  G+ + E  
Sbjct: 208 WGDDERLQKIHPKTAKK-----YTYGLKDSDDFQAFDVVKTTEGAKFHVRANGEDLGEFT 262

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N    + I      D+D   K        +  G + R +      T++ +
Sbjct: 263 IHLFGDHNVMNATAVIAIAFTEGIDLDVVRKG-----LVKYTGAKRRFSEKDFGDTVVID 317

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  ++A I    Q     + + + +          ++ F  +  E+L    +   
Sbjct: 318 DYAHHPTELRATIQAARQ--KFPDRKLVTIF--QPHTYSRTKEFEEEYVEILK--GVDKA 371

Query: 405 WL---SGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +L    G    A  D     I        V   + +  L  +       GD +V   +  
Sbjct: 372 FLTPIYGSAREAAGDIKSEDIASQIPGAEVIDFDNLKDLLAY------KGDCIVFMGAGD 425

Query: 455 C 455
            
Sbjct: 426 I 426


>gi|300857309|ref|YP_003782293.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
 gi|300437424|gb|ADK17191.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
          Length = 457

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 148/405 (36%), Gaps = 48/405 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N +      +L+IP+    ++LG + K             +A+ G+ GKTTT  M
Sbjct: 76  AAIQKNNEEFLKAKTLNIPLMSRAELLGHIMKGHKYN--------VAVAGTHGKTTTTSM 127

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   L +       +G   ++I   + +   P    + I E        ++F      P
Sbjct: 128 LSCITLKADLDPTILVGGNLDNINGNVRIGNSP----YFITEACEYKGSFLKFF-----P 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VI  I   HL  +  I++I +A  +    + + G +    DD+  + + +  +    
Sbjct: 179 SIGVILNIDADHLDYYKDIDDIQNAFIKFANLIPEKGYLVGCVDDARMKNVISNVNC--- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGI 302
             + ++G +   D   +      +  +  ++      +  +H +  G H   N L +  +
Sbjct: 236 -NVLTYGINAG-DITAKNICFDEKSCASFDIYKNDVKISSLHLNVPGKHNILNALASTAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             IL    D     L  F   +G  +R+     +   T+ID+ Y  +P  +KA ++    
Sbjct: 294 SLILDISTDNIKMGLENF---KGTHRRFELKGKKQGITVIDD-YAHHPTEIKATLNAAIN 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVL 412
                  R I V          + S   +  E     N+  + L+          G    
Sbjct: 350 YP---HKRIICVF--QPHTFSRTISLFKEFTEAFD--NVDELILANIYPAREKDTGKVSS 402

Query: 413 AL--KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           A+  K+   R I          +  +++S+L DGD+++   +   
Sbjct: 403 AMLSKEIAKRGIKSTNISDFKSIVDYLKSNLKDGDLLLTVGAGDV 447


>gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
 gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
          Length = 494

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 135/392 (34%), Gaps = 27/392 (6%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A     + ++A+ G+ GK+TT  M+ + L  +    +             
Sbjct: 112 LRVLHRSEALAAAMGASQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSN 171

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  +  + + E   S    +R+     +P IAV+T + P HL  +   E +  A  
Sbjct: 172 ARLGATGEGSWFVAEADESDGSFVRY-----QPAIAVVTNVEPDHLDFYETPERVYEAFN 226

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                +   G +   +DD     L  ++   GI+ + ++G+S  AD ++ +      +S 
Sbjct: 227 RFVASMVPGGVLVTCWDDEGARALAERARDAGIE-VVTYGQSTEADLRVSRITSHGSESS 285

Query: 272 MEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             ++   +          +      G H   N         +  A  + A  AL  F   
Sbjct: 286 ATLRWSFECASKHYEGEQDAQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFG-- 343

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G  +R+    +     + D+ Y  +P  +  A+     ++       +          E
Sbjct: 344 -GADRRFTLRGDVAGIKVFDD-YAHHPTEVFRALETGRTVADGHNLYVVFQPHLFSRTQE 401

Query: 384 LSQSFHIDLAE-----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  F   L++     VL +Y    + + G     +  A      VHY+         I 
Sbjct: 402 FAADFAQALSKADRSYVLDIYPARELPIEGVTSELITGAGFS--EVHYASDAAAAIEDIA 459

Query: 439 SSLVDGDVVVVKSSNSC-GF-YRLINLLLEEF 468
              V GD+++   +        R+++ L   +
Sbjct: 460 MCAVPGDIIMTIGAGDVTALGERILHELHARY 491


>gi|229087237|ref|ZP_04219383.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
 gi|228696079|gb|EEL48918.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
          Length = 436

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDFEKRFFTQTALEKRGISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          S+ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MSQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ + ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYYPDYAIMTNIDFDHPDYFTDVNDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    E     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 481

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/495 (18%), Positives = 174/495 (35%), Gaps = 70/495 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L  + G     +     + IS DSR ++    FF +KG ++   +++  A+  G 
Sbjct: 16  NFREVL--VNGEYYYHLEGTSFDAISYDSRKVSASTLFF-VKGANFKK-EYLEQAISNGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
           G  V   D       + IP   V+D+  A++   +        +  ++A TG+ GKTT  
Sbjct: 72  GFYVSEKDY-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV---DFGIFELG 168
                 L       A + + N  +               L L  M  +    D     + 
Sbjct: 127 YFAYHILEQS-HRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFSMMAEAVANDRTHLIME 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +    + +   + V   I+P H+        E+    K  +   ++ +  + +N
Sbjct: 186 VSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---MKNSQAVVIN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVV 284
            D   F++L  +              +++ DF   + +   E S        GK +    
Sbjct: 243 SDMDHFQVLADQVA------------NQDHDFYGSQSENQIETSKAFSFSATGKLAGNYD 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG+   +N +        L A ++   K ++        G+        G    ID 
Sbjct: 291 IQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAK---TRVPGRMEVLTQKNGAKVFID- 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+K  +SV   +  H  G    VLG     G   +S   D   +L  +    V
Sbjct: 347 -YAHNGDSLKKLLSV---VETHQTGTISLVLGS---TGNKGESRRKDFGLLLEDHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSL-VDGDVVVV--KSSNS 454
           +L+         LA+ + +   I   V      +       +      D V++  K ++ 
Sbjct: 400 FLTADDPNYEDPLAIAEEISSYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAGKGADC 459

Query: 455 CGFYRLINLLLEEFP 469
              Y+++N + EE+P
Sbjct: 460 ---YQIVNGVKEEYP 471


>gi|254515240|ref|ZP_05127301.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium NOR5-3]
 gi|219677483|gb|EED33848.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium NOR5-3]
          Length = 460

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 143/416 (34%), Gaps = 41/416 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  +
Sbjct: 68  SAVKADNAELVAAREQRIPVVRRAEMLAELMRHRYG---------IAVAGTHGKTTTTSL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +                    +    T A++     + I E   S    +      ++P 
Sbjct: 119 IAA--LFAAADLDPTFVIGGRVNSTGTHAQLGAG-RYLIAEADESDASFLH-----LQPM 170

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + V+T I   H+  +     ++     E    L   G   L  DD+    L         
Sbjct: 171 VTVVTNIEADHMETYGGDFAQLRRTFVEFLHNLPFYGLAVLCIDDAVLAGLGEDL----G 226

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGI 302
           + + S+G S++AD+++   +    ++   V+      ++ +  +  G H   N    + +
Sbjct: 227 RPMLSYGFSESADYRITGLEPAGLRTRFVVERPDGYPALPITLNMPGNHNVLNATAAVAV 286

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +    D     + L  F     R   Y           + + Y  +P  + A ++   Q
Sbjct: 287 ATDQGIDDQVIQETLERFSGVGRRFSVYEGVKLGQQVVTLVDDYGHHPTEVAATLASARQ 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--A 417
             P    RRI ++         ++  + D   VLS  +   +  V+ +G   +A  D  +
Sbjct: 347 AWPE---RRIVMVYQPHRF-TRTRDLYDDFVSVLSDTDFLVLLEVYPAGEDAVAGADSRS 402

Query: 418 LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L RSI         Y+ +   +   +   L   DV++ + +      RL   L +E
Sbjct: 403 LARSIRQRGQLDPLYAASAGDVPTLLADVLEADDVLITQGAGDIA--RLAKQLRDE 456


>gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 689

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 157/486 (32%), Gaps = 58/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L         G      V+G ++ ++       F A+ G    G ++   A   GA 
Sbjct: 24  LSALAAGFGLELHGD--DRDVSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAA 81

Query: 67  LVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
            V+ +      +     +  + V         L  ++        S+ T+I ITG+ GKT
Sbjct: 82  GVLTDPAGLALIREDPEAADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKT 141

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGI 164
           TT  +   AL +  +    +G+    +   +  + +                   VD  +
Sbjct: 142 TTAYLAEAALRAAGRVVGLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVV 201

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-- 222
            E+    L   R         +   T ++  HL     ++E  +AKA +FE    T    
Sbjct: 202 MEVSSHALALGR--VDGCHFAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQ 259

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKS 280
             +  DD +       +       I +   +  AD+ + +  +    S   +     G  
Sbjct: 260 AAVCVDDVWGRRAADVAAQGAATPI-TVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAE 318

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+     G +   N L+ + +      DVDTA+   +        G+  +    Q F  
Sbjct: 319 TEMTVPLPGAYNVANALLAVAMTVAAGTDVDTAV---AGLAHVAVPGRLEKVERGQEFLA 375

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   PA+++A ++ L        GR   VLG     G    +    L    +   
Sbjct: 376 VVD--YAHKPAAVEAVLATLGA---QTRGRLAVVLG----AGGDRDTEKRPLMGAAAARG 426

Query: 401 ISHVWLSGF--------HVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVV 447
              V ++           + A   A  RS+     E  +                 GDVV
Sbjct: 427 ADLVIVTDDNPRSEPPADIRAAVLAGARSVDAARGEIREIGDRRDAIAAAVDWARPGDVV 486

Query: 448 VV--KS 451
           ++  K 
Sbjct: 487 LIAGKG 492


>gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
 gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
          Length = 458

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 144/402 (35%), Gaps = 42/402 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L+IP+    + LG L K             +AI G+ GKTTT  M
Sbjct: 78  AAVSKDNPELLKAKELNIPIMSRAEFLGHLMKGHKFN--------VAIAGTHGKTTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++              + +  I V   L  +  +V  G  E  ++   E +       P+
Sbjct: 130 VSHIF--------LNANLDPTILVGGQLDAINGNVRTGNSEYFLTEACEYKGSFLKFFPY 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  I++I +A  +  + + K G +    +D     + ++ +     
Sbjct: 182 IGVILNIDADHLDFYKDIDDIQNAFIKFAKLIPKNGYLICYGEDPRMGKVISECNC---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
            + ++G + N +   +  K   +  +  +V    + +  V  +  G H   N L ++ + 
Sbjct: 238 NVLTYGLT-NGNVVAKNMKFDEKGCASFDVYAANEMITSVKLNVPGKHNILNALASICVS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L    +   K L  F   +G  +R+     +   T++D+ Y  +P  +KA +S     
Sbjct: 297 LSLDIPTNLISKGLESF---KGTHRRFEIKGVKNGITVVDD-YAHHPTEIKATLSAAKNY 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  +  E    +         +  +Y              L
Sbjct: 353 PHNKIFCVFQPHTYSRTLNLFKEFTEAFGDADEL-----ILADIYAAREKDTGVVSSSML 407

Query: 415 KDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + +  +    +   + + +  ++  +  +GDV++   +   
Sbjct: 408 ANKIKETKSACFNFHSFEEIVSYLNKNAKNGDVILTVGAGDV 449


>gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
 gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
          Length = 517

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 138/425 (32%), Gaps = 47/425 (11%)

Query: 5   WTFHDLL--------QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
            T H+LL        +    H   +     +  ++ DSR + P   F   KG  +    +
Sbjct: 1   MTLHELLALFTSKNIEYTTAHFDAVDQNAQLTDVASDSREVIPGSLFVC-KGASF-SPAY 58

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAV--AARLRSKATIIA 112
           +  AV+ GA   +    +   + ++  ++    VDDV  A+  +A   A     K T I 
Sbjct: 59  LTSAVKAGAVAYLCQRSLAEELQAVAPNVAAIHVDDVRFAMAYVAAGVAGHPDKKLTTIG 118

Query: 113 ITGSVGKTTTKEMLTIALSSI--KKTYACIGSY------------NNHIGVPLTLARMPV 158
           ITG+ GK+T   ML   L           IG              N     P     +  
Sbjct: 119 ITGTKGKSTCSYMLRAILDGDEPYSKCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHLKH 178

Query: 159 DVDFGI--FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIF 214
             + G+   ++ +S  G     T  +   +AV   I   H+S       E+   +K +IF
Sbjct: 179 AAEAGLPYVDMEISSQGLKYDRTVDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLKIF 238

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWME 273
           +         +N +   F+ +  ++     + + +F     +A     +           
Sbjct: 239 DLAR---VAVVNKNTMMFDQVMERAQ--RCEKVLTFSTTDSDATVWADEITPHQGMVTFT 293

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V     +        G    +N L  + +   L      A+         +  G+    +
Sbjct: 294 VHTPTWTSSAALPMSGLFNVENALAAITVADYLGIREKDAVLP---LMNVKVPGRMELLS 350

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 T + + Y  N  S +   S  ++  P      +     M  +G  + +   +L 
Sbjct: 351 SPDNKVTGLVD-YAHNKLSYQKLFSSTAKEFPGYGRYVV-----MGAVGGKAYNRRQELP 404

Query: 394 EVLSL 398
           E  + 
Sbjct: 405 EEAAK 409


>gi|115492555|ref|XP_001210905.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114197765|gb|EAU39465.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 839

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 143/420 (34%), Gaps = 57/420 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V +     IPV    ++L +L +             IAI GS GK+TT  M+   L +  
Sbjct: 445 VEAARERRIPVIHRSEMLASLMRHH---------KSIAICGSHGKSTTTSMVAGMLEAGG 495

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            +   I      +             ++ + E   S    ++     +   I+V+T I  
Sbjct: 496 LSPTTISG---AVVTQYGSNAHMGSGNWMVVEADESDGTMVQ-----LPALISVVTNIDS 547

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H++ +   E+  +  A+    +   G   L  DD     +  +      + I ++G S+
Sbjct: 548 DHITFYGTQEKTRATFAQFVRNVPFYGLAVLCIDDPGVRKMLPEVQ---DRNIITYGVSE 604

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +AD +    K   + S   + ++ +          +V + +G H  QN L T  I   L 
Sbjct: 605 DADVRAEDVKYNPQDSTFVLSVRNRRDGTRRVVGCIVLNVLGLHNLQNALATTAIALELG 664

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++++   AL  F    G  +RY          +ID+ +  +PA MKA       ++   
Sbjct: 665 IELESIRYALRNFQ---GTNRRYIHVGEANGIQIIDD-FGTHPAEMKAT----QTMAKQA 716

Query: 368 EGRRI--------------AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             RRI              A L +        +S HI + +      +  V  +G     
Sbjct: 717 GARRIIAVYQPTAVVRNVEAWLEEYP--AAFEESAHIIIGQ-ADGVGVDPVP-AGKARET 772

Query: 414 LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           L   L                L   +     +GD VV     S   +     L  +  A+
Sbjct: 773 LVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMGFRSSTLW--ARALAGQLKAL 830


>gi|229830143|ref|ZP_04456212.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
 gi|229791441|gb|EEP27555.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
          Length = 458

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 143/365 (39%), Gaps = 35/365 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           +      IAI G+ GKTT+  M++ + L S +K    +G   + I   + +     + D 
Sbjct: 107 MSHYPESIAIAGTHGKTTSTSMMSMLLLESDQKPTISVGGILDAIHSNVHVG----NSDR 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E        + F      P  +VI  I   HL  F  +++I  +     E     G 
Sbjct: 163 FVAEACEYTNSFLEF-----YPKYSVILNIEAEHLDFFKDLDDIRRSFKRFAENTADKGL 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM 281
           + +N + + ++ L A   +     + ++G   + D+   +        +      + +++
Sbjct: 218 LVINGEINDWQSLVADVKS----DVQTYGFDDSCDWYPSQISYDHFGCASFIPHFRQQTL 273

Query: 282 E-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +  H  G H   N L  L +   +    +   +  + FH   G  +R++        T
Sbjct: 274 PLIRLHVPGRHNIGNALSVLAVAHRMGLSEEEIREGFAKFH---GADRRFQYKGKFHGAT 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------ 394
           +ID+ Y  +P  ++A+++     + +   +RI V+         +++F  D A+      
Sbjct: 331 VIDD-YAHHPTEIRASLAA----AKNYPHKRIVVVFQ-PHTYTRTKAFLEDFADALSAAD 384

Query: 395 ---VLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +  +Y      + G   L +K  L    +   Y  + + +  +++ + +DGD+++  
Sbjct: 385 QVILADIYAAREQDIYGVSSLDIKKRLDAAGVDCLYFPSFEEIEDYLKKNSIDGDLLITM 444

Query: 451 SSNSC 455
            + + 
Sbjct: 445 GAGNV 449


>gi|228993421|ref|ZP_04153337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
 gi|228999465|ref|ZP_04159044.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229007021|ref|ZP_04164649.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228754260|gb|EEM03677.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228760410|gb|EEM09377.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228766489|gb|EEM15132.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
          Length = 436

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/410 (22%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSIGIVPQGFV----NGISI---DSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG          V     GISI   D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDFEKRFFTQVALEKRGISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          SK T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGNL---------MSKYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYYPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    E     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFGGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|33151978|ref|NP_873331.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus ducreyi
           35000HP]
 gi|38372292|sp|Q7VMY1|MURC_HAEDU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33148200|gb|AAP95720.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus ducreyi 35000HP]
          Length = 475

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 157/436 (36%), Gaps = 48/436 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +   GA +VVV++ +  +   +       IPV     +L  + +          
Sbjct: 67  FIGHQAENIAGASVVVVSSAIEENNPEITAAKSARIPVIQRAQMLAEIMRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ML++  +            N  +              + I E 
Sbjct: 119 -HSIAVAGTHGKTTTTAMLSMIYTEAGLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T I P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMLSVVTNIEPDHMDTYGGDFEQMKTIYVKFLRNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     +  +      + + S+G + NAD+++  ++Q   Q    V     + ++VV 
Sbjct: 230 ADDDVVMEIAPQV----GRQVISYGFNANADYRIENYQQTGFQGHYTVICPNNERLDVVL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G+H A N    L +        D  + AL+ F     R              ++ + 
Sbjct: 286 NVPGHHNALNATAALAVAKEEGIANDAILAALADFQGAGRRFDPLGTFKRPNGTVMLIDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +P  +   I    Q   H   R + +          ++    D   VLS  ++    
Sbjct: 346 YGHHPTEIAVTIKAARQGWQHK--RIVMIF--QPHRYSRTRDLFDDFVNVLSKVDVLIML 401

Query: 403 HVWLSGFHVLALKD--ALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G + +   D  AL RSI                L   +   + D D+++ + + +
Sbjct: 402 DVYAAGENAIVKADSKALCRSIRNLGKVDPILVSDTSQLGEVLDQIIQDNDLILAQGAGN 461

Query: 455 CGFYRLINLLLEEFPA 470
               +L   L E++ A
Sbjct: 462 I--SKLTRKLAEDWQA 475


>gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 517

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 154/481 (32%), Gaps = 58/481 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
            Q +  H++G   +  +  I +DS S+      F A+ G    G  F        A  ++
Sbjct: 16  AQGVPAHAVG---EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAIL 72

Query: 70  VNTD--MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEM 125
            +     V +    + PV  VDDV   L   +           T+I +TG+ GKTTT  +
Sbjct: 73  TDAAGLEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYL 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGM 169
           L   L         IG+    I       ++                   V   + E+  
Sbjct: 133 LEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSS 192

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNY 227
             L   R         +A  T ++  HL     +++   AKA  F            +  
Sbjct: 193 HALSLGR--VAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCV 250

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQ-GKSMEVVH 285
           DDS+ + +   S A  ++T+ + G  + ADF               ++     +S +V  
Sbjct: 251 DDSWGQRMA--SVAADVQTVSTLG--QEADFSATDINVSDSGAQSFKINAPSNQSYQVEL 306

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N  +     + +  D +   + +S        G+  R    Q F  ++D  
Sbjct: 307 ALPGAFNVANATLAFAAAARVGVDGEAFARGMSK---VAVPGRMERIDEGQDFLAVVD-- 361

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVLS 397
           Y   PA++ A +  L       +GR   V+G   +        MG+LS     DL  V  
Sbjct: 362 YAHKPAAVAAVLDTLRT---QIDGRLGVVIGAGGDRDSTKRGPMGQLSAQ-RADLVIVTD 417

Query: 398 LYNISHVW-----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
               S V                    R + V            +      GD +VV  K
Sbjct: 418 DNPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGK 477

Query: 451 S 451
            
Sbjct: 478 G 478


>gi|284991684|ref|YP_003410238.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
 gi|284064929|gb|ADB75867.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
          Length = 489

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 140/390 (35%), Gaps = 32/390 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L +    A + +    +A+ G+ GKT+T  MLT+A+ +           +    +  
Sbjct: 103 LRVLPRAVALAAVMAGKRSVAVAGTHGKTSTTSMLTVAVQACG--------VDPSFAIGG 154

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            L     +   G  ++ ++   E      L+ PH A++T +   HL N+  +  + +A  
Sbjct: 155 DLNESGSNAHAGGGDVFVAEADESDRSFLLLAPHGAIVTNVEADHLDNYGDLAAVEAAFD 214

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+  G + L  DD     L+          + ++G ++++D +L   +   E + 
Sbjct: 215 RFLQTLDPAGFVVLCADDPGSARLRT---VPTPARVRTYGTAEDSDLRLVDVEVGPETTA 271

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               L G  +  V     G HMA+N    L     L    +  I  L  F    G  +R+
Sbjct: 272 WTAVLDGDVLGRVPIRVPGEHMARNSAAALLAGLELGLPAEGLISGLGRFG---GVHRRF 328

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                 G   + D+ Y  +P  ++A +     ++    GR   V+     +   ++ F  
Sbjct: 329 ELKGTVGGVRVYDD-YAHHPTEVEAQLRAARAVAG--TGR--VVVAFQPHLYSRTREFAA 383

Query: 391 DLAEVL---------SLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSS 440
                L          +Y      + G     + DA+   +  VH+  +       +   
Sbjct: 384 AFGTALGLADEVVVMDVYGAREDPVPGVTGAMVADAVALPAERVHFEPSWSAAAPALADR 443

Query: 441 LVDGDVVVVKSSNSCGF--YRLINLLLEEF 468
              GD+V+   + +       ++  L    
Sbjct: 444 AGPGDLVITMGAGNVSMVGPEVLEALRARL 473


>gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 252

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G
Sbjct: 127 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 176


>gi|254562107|ref|YP_003069202.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
 gi|254269385|emb|CAX25351.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
          Length = 468

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 146/426 (34%), Gaps = 54/426 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+  A +VV          +       +PV    ++L  L +        
Sbjct: 56  FVGHR--AENVENAALVVVSTAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSC---- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                +A+ G+ GKTTT  ++   L +  +  T    G  N +     T ARM    D+ 
Sbjct: 110 -----VAVAGTHGKTTTTSLVATLLDAGNLDPTVINGGIINAY----GTNARMGAG-DWM 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    ++     +   +A++T I P HL +F   E I  A     + +   G  
Sbjct: 160 VVEADESDGTFLK-----LPADVAIVTNIDPEHLDHFGSFEAIKDAFRRFIDNIPFYGFA 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
            +  D    + L         + I ++G++  AD +L        QS   V ++ +    
Sbjct: 215 VMCIDHPIVQDLVGHIE---DRRIITYGENPQADVRLIDIDLKGGQSRFRVMIRDRRPGF 271

Query: 281 ----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++V    G H A N    L +   L    D   KAL+ F   + R  R      +
Sbjct: 272 RMEIEDLVLPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFGGVKRRFTR----TGE 327

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----H 389
                I + Y  +P  ++A   VL       +GR IA++       +  L + F      
Sbjct: 328 WNGATIFDDYGHHPVEIQA---VLRAARASTDGRVIAIVQPHRYTRLQSLFEDFCTCFND 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
            D   V  +Y      + G    +L   L    H      E  + L   +       D V
Sbjct: 385 ADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVAGRAGSNDYV 444

Query: 448 VVKSSN 453
           V   + 
Sbjct: 445 VCLGAG 450


>gi|154687119|ref|YP_001422280.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           FZB42]
 gi|166222954|sp|A7Z7S3|MURC_BACA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154352970|gb|ABS75049.1| MurC [Bacillus amyloliquefaciens FZB42]
          Length = 432

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 159/477 (33%), Gaps = 90/477 (18%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSI----------APQEAFFAIKGP 49
           M+PL     +L        G   +  +    +++ R+I           P     A  G 
Sbjct: 14  MSPL---AQILHDTGYQVQGSDIEKQIFTQAALEKRNIPIYPFSADNIKPGLTVIA--GN 68

Query: 50  HY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            + D H  I  A+ +G                  IPV      L    K         K 
Sbjct: 69  AFPDSHPEIAKALAEG------------------IPVIRYHKFLAEYMK---------KY 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  +L   +   K T   IG             R     ++ +FE  
Sbjct: 102 TSVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGDG---------TGRGNESSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R      +P  A++T I   H   F+ I+++  A   +   + K   I    D
Sbjct: 152 ----CEYRRHFLSYQPDYAIMTNIDFDHPDYFANIDDVFDAFQNMALQVNKG--IIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHG 287
           D +   + A         +  +G  +  DFQ R   + +E +  +V ++    +      
Sbjct: 206 DEYLPKIHANV------PVVYYGTGEENDFQARNIVKNTEGTTFDVFVRNTFYDTFYIPA 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L  + +      DV+     L  F   + R          G   LID+ Y 
Sbjct: 260 YGHHNVLNSLAVIALCHYEEIDVNMIKLGLESFGGVKRRFNEKVI----GSQVLIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +K  I    Q  P  E   IAV          +QSF  + AE LS      V+L 
Sbjct: 315 HHPTEIKVTIEAARQKYPERE--IIAVF--QPHTFTRTQSFLDEFAESLS--AADRVYLC 368

Query: 408 GFHVLA--------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                A        + D   +  +    E  D     +++   +G V++   +    
Sbjct: 369 DIFGSARENVGKLTITDLQEKIANAELIEEND--TSVLKAH--EGAVLIFMGAGDIQ 421


>gi|282866568|ref|ZP_06275611.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
 gi|282558615|gb|EFB64174.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
          Length = 464

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 153/427 (35%), Gaps = 43/427 (10%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKL 98
           A+    + GH      +   A  VVV++ +      L       +PV    D L AL + 
Sbjct: 52  ALGATVHIGH--AAGHLADDASCVVVSSAIRPDNPELVRAAELSVPVVHRSDALAALMEG 109

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
             A         IA+ G+ GKTTT  ML +ALS +    +        +  P T A    
Sbjct: 110 LRA---------IAVAGTHGKTTTTSMLAVALSGLGLDPSYA--IGGDLEGPGTNAAHGG 158

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + E   S     +++     P +A++  +   H +N++ ++EI  +       + 
Sbjct: 159 G-DIFVAEADESDRSFQKYV-----PQVAIVLNVELDHHANYASMDEIYESFETFTGKVV 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ ++ D      L  +        + ++G+++ AD ++ K       S + V L G
Sbjct: 213 PGGTLVVSADQQGAVELTRRVRGQDGLQVVTYGEAEGADVRVHKITPRGLTSEVTVVLGG 272

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K +       G H A N +  L     L         A+  +   +   +R +       
Sbjct: 273 KYLTFTVSVPGRHYALNAVAALAAGVALGVPAHNLASAIGTYTGVK---RRLQLKGEAAG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +SY  +P  M A +  +   +    G R+ V+     +   +Q    ++ + L+L
Sbjct: 330 VQVI-DSYAHHPTEMAADLEAMRGAAA---GSRLLVVFQ-PHLFSRTQELGTEMGQALAL 384

Query: 399 YNISHV---------WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + S V          + G     + DA       V        +   +      GD+V+
Sbjct: 385 ADASLVLDIYPAREDPIPGITSELIIDAAKTAGADVTAVHDKARIPAAVAGMAKPGDLVL 444

Query: 449 VKSSNSC 455
              +   
Sbjct: 445 TMGAGDV 451


>gi|319406005|emb|CBI79636.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. AR 15-3]
          Length = 463

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 60/429 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   GA  VV+             +     +PV    ++L  L +        
Sbjct: 46  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKKHLPVVKRAEMLAELMRFRR----- 96

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI G+ GKTTT  M+   L + +     I   N  I           D D+ + 
Sbjct: 97  ----TIAIGGTHGKTTTTSMVAALLDAGRFDPIVI---NGGIINAYGTNARMGDGDWMVV 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    ++     +   IAV+T I   HL ++     +  A  +  E +   G   +
Sbjct: 150 EADESDGSFLK-----LPADIAVVTNIDVEHLDHYGNFNAVREAFRQFVENVPFYGFAVM 204

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-- 283
             D    + L ++ H    + + ++G +  AD +        +++  ++ ++ +  +   
Sbjct: 205 CLDHPEVQTLASRIH---DRWVITYGANPQADVRFLNLSMEGQKACFDILIRSRKTDEKI 261

Query: 284 -----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +    G H   N    + I   L    +   K L+ F   +   +R+    N   
Sbjct: 262 EINNLILPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFEGVK---RRFTKTGNWNG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
             + D+ Y  +P  +KA +    +         I PH   R   +  D       S  F+
Sbjct: 319 VEIFDD-YGHHPVEIKAVLHAARESAKRNIIAVIQPHRYTRLYHLFDDF------STCFN 371

Query: 390 -IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDV 446
             D   +  +Y      ++GF    L + +  + H  V    T++ +   + +    GD 
Sbjct: 372 DADTVMITPVYAAGEEPIAGFGSKELVEHIQMAGHRDVRLINTLEDVISIVSTLAKSGDY 431

Query: 447 VVVKSSNSC 455
           VV   + S 
Sbjct: 432 VVFLGAGSI 440


>gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 481

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 168/481 (34%), Gaps = 71/481 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + F +++   +G             IS DSR +     FF +KG ++   +F+  AV+ G
Sbjct: 15  YNFREIID--KGQYFYHYRNLVFEKISYDSREVDASTLFF-VKGDNFKK-EFLEKAVESG 70

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
               V  TD       ++IPV  V+DV  A++   +      + K  ++A TG+ GKTT+
Sbjct: 71  LQFYVSETDF-----EVTIPVILVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTS 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIF 165
                  L    K  A + + N  +               L L +M            I 
Sbjct: 126 AYFAYHILQQSHK-PALLSTMNTTLDGEHFFKSTLTTPESLDLFKMMATAVENGRTHLIM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           E+       ++   + +   + V   I+P H+        E+    K  + E    +  +
Sbjct: 185 EVSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAV 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSME 282
            +N +   FE+L  +  ++       +G+  +                   +  G  + +
Sbjct: 240 VVNSEMDHFEVLAEQVASMEHD---FYGQHSDNQIH--------HSQAFSFETSGILTEK 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG    +N L        L A +    K ++        G+        G    +
Sbjct: 289 FDIQLIGRFNQENALAASLACLRLGATISDIKKGIAA---TRVPGRMEVLTQQNGAKVFV 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D  Y  N  S+   +SV+ +   H +GR + VLG     G   +S   D   +++ +   
Sbjct: 346 D--YAHNGVSLANLLSVVQE---HQKGRIVLVLGA---TGNKGESRRKDFGLLINQHPEL 397

Query: 403 HVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV--KS 451
            V L+         +A+   +   I     + +      I+ +L      GD V++  K 
Sbjct: 398 MVILTADDPNYEDPIAIAKEIASYISFD-VDMIADREEAIKKALGLTSKKGDAVILAGKG 456

Query: 452 S 452
           +
Sbjct: 457 A 457


>gi|68535826|ref|YP_250531.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium jeikeium
           K411]
 gi|109892701|sp|Q4JW94|MURC_CORJK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68263425|emb|CAI36913.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium
           K411]
          Length = 498

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 145/436 (33%), Gaps = 58/436 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV    D+L  L +   A  L          G+ GKT+T  M
Sbjct: 82  AAIPQDNPELVGAREAGIPVLRRSDILALLLQDRRAFLL---------AGTHGKTSTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              AL +  +        +    +   L R   +   G  E+ ++   E         P 
Sbjct: 133 AVAALQAAGQ--------DPSFAIGGQLNRAGTNAHNGTGEVFVAEADESDGSFLSYSPE 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P HL  F           +    +   G + +  DD     L  +  A   +
Sbjct: 185 IAVVTNIEPDHLDYFKTESAYREVFEKFAHRIVPGGFLVVCLDDPGSAALAEELIAGAEE 244

Query: 246 ------TIYSFGKSKNADFQ--------LRKWKQCSEQSWMEVQLQGK----------SM 281
                 T+  +G ++  D          +   +  +E +   ++L  +          + 
Sbjct: 245 GNPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGTVSALRLTEEVKKAAEEAAGTY 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G HM  N    +    +L ADVD  I  +  F   +G  +R+     +    +
Sbjct: 305 SLRVAIPGIHMVLNAAAAVLGSVLLGADVDKVIAGIGGF---DGVRRRFEYHGTRQDVEV 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------- 394
            D+ Y  +P  + A ++   Q      GR +AV      +   + +F  + AE       
Sbjct: 362 YDD-YAHHPTEVAAVLAAARQRVEARGGRIVAVF--QPHLYSRTMNFADEFAEALSLADQ 418

Query: 395 --VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +L ++      + G     + + +  S    +      +   +   +  GD+V+   +
Sbjct: 419 VVLLDIFGAREEPVEGVDSRIIGNKIDASTDWVFEPDFSKVSSVVAGLVQPGDMVLTIGA 478

Query: 453 NSCGFYRLINLLLEEF 468
            +     L + +L E 
Sbjct: 479 GTVTM--LADEILLEL 492


>gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           diphtheriae]
          Length = 513

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 88/487 (18%), Positives = 157/487 (32%), Gaps = 56/487 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   L +   G  +G    G   ++ I +DS  +     F A+ G    G  +       
Sbjct: 10  TLERLTELAGGRLVGETTAGATEISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKAA 69

Query: 64  GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
            A  V+ + +    +       P+  VDDV   L  L+         + TII +TG+ GK
Sbjct: 70  AALAVLSDHEGTQILVDSGEKRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  +L   L +       IG+    I       ++                   V   
Sbjct: 130 TTTSYILERGLMAAGLHVGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHV 189

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TG 221
           + E+    L   R      R   A  T ++  HL     ++E   AKA  F+        
Sbjct: 190 VMEVSSHALALGRVT--GTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAE 247

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQ-SWMEVQLQG 278
              +  +D + + +  ++ A  I T+ +  ++    AD+ +              V    
Sbjct: 248 KSVVCVNDLWGKNMAERAGADAI-TVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGA 306

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +S +V     G     N ++ L +   +  D D  I+ ++        G+  R    Q F
Sbjct: 307 QSTDVHLPLPGGFNIANTVVALALAESVGVDTDAFIRGIA---DVAVPGRMERIDRGQEF 363

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D  Y   PA++   I  +    P   GR   V+G     G+        +    + 
Sbjct: 364 LAVVD--YAHKPAAVAVVIDTVRDQVP---GRIAVVVGA---GGDRDSGKRPIMGAEAAR 415

Query: 399 YNISHVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDV 446
                V ++           +++A+    H       +                   GD 
Sbjct: 416 R-ADLVIVTDDNPRSEDPAKIREAVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDA 474

Query: 447 VVV--KS 451
           V+V  K 
Sbjct: 475 VIVAGKG 481


>gi|283796967|ref|ZP_06346120.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
 gi|291075380|gb|EFE12744.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
          Length = 465

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 147/414 (35%), Gaps = 43/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+     +P+     +LG + +    A        IA++G+ GKTTT  M
Sbjct: 83  AAIHPDNPEFAAAREAGLPMLSRAVLLGEMMRNYREA--------IAVSGTHGKTTTTSM 134

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   +  I V   L  +  ++  G  E  ++   E         P 
Sbjct: 135 LSEIF--------LVAEADPTISVGGILPSIGGNIRVGGPEFFITEACEYTNSFLEFFPT 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   H+  F  + +I S+     +   K G + +N +   ++ +   +      
Sbjct: 187 IEVILNIEEDHMDFFKDLADIRSSFTRFAKKTPKQGAVVINGEIEDWQEIVKNTEG---- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
            + +FG  +  D+   +    S  +   +  ++G+  + +  G+ G H   N L      
Sbjct: 243 RVITFGTDRGFDYSAGEISYDSLARPTFDFYIRGEKRDTLSLGVSGEHNVYNALAAAAAA 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++   + L  F   +   +R+         T+ID+ Y  +P  ++A++      
Sbjct: 303 LEAGLSLEAVKRGLLSFTGTK---RRFEKKGVLNGVTIIDD-YAHHPQEIRASLKTAQNY 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
             +   R   V          +++F  + AE         +  +Y        G     +
Sbjct: 359 PHN---RIWCVF--QPHTYTRTKAFLDEFAEALSMADCIVLADIYAARETDTLGISSRDI 413

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + + R    V Y  T + +  F++ S + GD+++   +       +   LL E
Sbjct: 414 AEKIERLGKKVWYFHTFEEIEEFLKKSCIHGDLLITMGAGDI--VNVGEALLAE 465


>gi|229105316|ref|ZP_04235965.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
 gi|228678242|gb|EEL32470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
          Length = 436

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 147/410 (35%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++  A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFADINDVFGAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIAICHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|149175312|ref|ZP_01853934.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
 gi|148845921|gb|EDL60262.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
          Length = 486

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 155/427 (36%), Gaps = 53/427 (12%)

Query: 48  GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKL 98
           G     GHD  F+      G  ++V +  +  +         + IP F    +LG L + 
Sbjct: 72  GYRVHQGHDMRFVPE----GTSVLVYSPAIGLANPERRFAQRMGIPQFSYAQMLGHLMR- 126

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                   +   + I G+ GK+TT  +    L +   + + +      IG  L    +  
Sbjct: 127 --------QKQGVCIAGTHGKSTTTALTAFILQNAGVSPSAV------IGAELCSQNLNG 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
               G   +  S   E +     + P  A IT I P H   F   +++ +A AE    + 
Sbjct: 173 WAGEGALFVAES--CEYQRSFLNLFPFYAAITNIEPDHFDYFKNQDDMTTAYAEFVARIP 230

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K GT+ L       + L+    A     I +F   + AD+     K  +      +  QG
Sbjct: 231 KGGTLVLPSTCMGLQKLREACKA----KISTFSLERGADWWATDIKSTAFGLRFRLFHQG 286

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +   E+     G H   N ++   +      D +   + +  F    G  +RY    +  
Sbjct: 287 EYFSEISLQKTGKHNVSNAMVAAILCHTAGIDAEQIREGIYEF---PGIRRRYERMGSYK 343

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFHIDLAEV 395
             TL D+ Y  +P +++A + +L Q       RRI  L +  ++        ++    + 
Sbjct: 344 GLTLFDD-YAHHPTAIQATLKMLRQ---EYPDRRIWCLYEPHQVSRTQALMDYYAGSFQQ 399

Query: 396 LSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                I+ V+ +   +           ++  L  +  V +S ++D +   +++    GD+
Sbjct: 400 ADRILIAPVYAAREKLAEEPVETSKELVRRILLHNASVSFSSSLDQMLSTLETEAQSGDI 459

Query: 447 VVVKSSN 453
           ++   + 
Sbjct: 460 IITMGAG 466


>gi|261839440|gb|ACX99205.1| UDP-MurNAc-pentapeptide sythetase [Helicobacter pylori 52]
          Length = 493

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 137/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIPGDLILF 485


>gi|163852359|ref|YP_001640402.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218531119|ref|YP_002421935.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240139696|ref|YP_002964173.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
 gi|229620038|sp|A9VWV4|MURC_METEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766010|sp|B7KSC2|MURC_METC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163663964|gb|ABY31331.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218523422|gb|ACK84007.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240009670|gb|ACS40896.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
          Length = 468

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 146/426 (34%), Gaps = 54/426 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+  A +VV          +       +PV    ++L  L +        
Sbjct: 56  FVGHR--AENVENAALVVVSTAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSC---- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                +A+ G+ GKTTT  ++   L +  +  T    G  N +     T ARM    D+ 
Sbjct: 110 -----VAVAGTHGKTTTTSLVATLLDAGNLDPTVINGGIINAY----GTNARMGAG-DWM 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    ++     +   +A++T I P HL +F   E I  A     + +   G  
Sbjct: 160 VVEADESDGTFLK-----LPADVAIVTNIDPEHLDHFGSFEAIKDAFRRFIDNIPFYGFA 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
            +  D    + L         + I ++G++  AD +L        QS   V ++ +    
Sbjct: 215 VMCIDHPIVQDLVGHIE---DRRIITYGENPQADVRLIDIDLKGGQSRFRVMIRDRRPGF 271

Query: 281 ----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++V    G H A N    L +   L    D   KAL+ F   + R  R      +
Sbjct: 272 RMEIEDLVLPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFGGVKRRFTR----TGE 327

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----H 389
                I + Y  +P  ++A   VL       +GR IA++       +  L + F      
Sbjct: 328 WNGATIFDDYGHHPVEIQA---VLRAARASTDGRVIAIVQPHRYTRLQSLFEDFCTCFND 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
            D   V  +Y      + G    +L   L    H      E  + L   +       D V
Sbjct: 385 ADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVAGRAGSNDYV 444

Query: 448 VVKSSN 453
           V   + 
Sbjct: 445 VCLGAG 450


>gi|110634356|ref|YP_674564.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123057820|sp|Q11GS6|MURC_MESSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110285340|gb|ABG63399.1| UDP-N-acetylmuramate--L-alanine ligase [Chelativorans sp. BNC1]
          Length = 465

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 162/426 (38%), Gaps = 55/426 (12%)

Query: 56  FILHAVQK-GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA +  G   VVV       +     +     +P+    ++L  L +   A      
Sbjct: 56  FIGHAAENLGDAEVVVISSAIKRDNPEYVAARERHLPIVRRAEMLAELMRFRQA------ 109

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +AI G+ GKTTT  M+   L +       I      I V  T ARM    D+ + E 
Sbjct: 110 ---VAIGGTHGKTTTTSMVAALLDAGGLDPTVIN--GGIINVYGTNARMGEG-DWMVVEA 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     +   IAVIT I P HL ++   +++  A  +  E +   G   +  
Sbjct: 164 DESDGTFLK-----LPADIAVITNIDPEHLDHYGSFDKVREAFRQFVENVPFYGLGVMCI 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--- 284
           D    + L ++      + + ++G++  AD +    +  +  S  +V ++ +  + V   
Sbjct: 219 DHPEVQALVSRIE---DRRVVTYGENLQADVRFENHRMENGHSVFDVIIRARKSDAVKAM 275

Query: 285 ----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N    + + + L    +   K L+ F   +   +R+         +
Sbjct: 276 RDLRLPMPGRHNVSNATAAIAVANELGMGEEAIRKGLAAFGGVK---RRFTLTGTWNGIS 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-ID 391
           + D+ Y  +P  ++A +    + +    GR IA+        L D+ +  E S  F+  D
Sbjct: 333 IFDD-YGHHPVEIRAVLKAAREATS---GRIIAIAQPHRYTRLRDLFD--EFSACFNDAD 386

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
              V  +Y      ++G    AL  +L  + H    +    + +   ++ +  +GD VV 
Sbjct: 387 TVLVAPVYAAGESPIAGISSEALVASLRAAGHRDARFIPGPEAIAPIVREAANEGDFVVF 446

Query: 450 KSSNSC 455
             + + 
Sbjct: 447 LGAGNI 452


>gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 507

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 164/492 (33%), Gaps = 67/492 (13%)

Query: 6   TFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   +     G  H     P   V+ I+I+     P   F A+ G    G  F   A   
Sbjct: 4   TIERIATECAGELHLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKF---AGSS 60

Query: 64  GAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            A  +V +            + PV   DD+   L  ++        +  T+I ITG+ GK
Sbjct: 61  QAAAIVTDKPGYEILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTSGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFG 163
           TTT  M+   L++   T   IG+    I                   L L      V   
Sbjct: 121 TTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVTHV 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKT 220
           + E+    +   R     V   IA+ T ++  HL     +E+    KA++F     L   
Sbjct: 181 VMEVSSHAIALGR--VGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAK 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK 279
            +  +  DD +   L  +       T+ +  K   A+F     +   + +    V  +GK
Sbjct: 239 KS-IICVDDKWGVDL-TRLAGPAATTVST--KGAPANFMATDIETEPDGTSQFTVAYKGK 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V  H  G     N  + +   +    DV T I  L+        G+  +   ++G  
Sbjct: 295 KQRVTLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQ---VPGRMEKIDNDKGVL 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   PA+++AAI     +    EGR IAV G     G         +    ++ 
Sbjct: 352 AVVD--YAHKPAALEAAIKA---VRDEVEGRVIAVFG----AGGDRDHGKRPIMGSAAVA 402

Query: 400 NISHVWLSGFHV---------LALKDALP---------RSIHVHYSETMDGLFLFIQSSL 441
               V ++  +           A++D            RS+ +              +  
Sbjct: 403 GADVVIITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKS 462

Query: 442 VDGDVVVV--KS 451
             GD ++V  K 
Sbjct: 463 QAGDAIIVAGKG 474


>gi|319404509|emb|CBI78114.1| UDP-N-acetylmuramate--alanine ligase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 456

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 149/429 (34%), Gaps = 60/429 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   GA  VV+             +     +PV    ++L  L +        
Sbjct: 39  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKRHLPVVKRAEMLAELMRFRR----- 89

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI G+ GKTTT  M+   L +       I   N  I           D D+ + 
Sbjct: 90  ----TIAIGGTHGKTTTTSMVAALLDAGHFDPIVI---NGGIINAYGTNARMGDGDWMVV 142

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    ++     +   IAV+T I   HL ++     I  A  +  E +   G   +
Sbjct: 143 EADESDGTFLK-----LPADIAVVTNIDVEHLDHYGNFNAIREAFRQFVENVPFYGFAVM 197

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSM 281
             D    + L ++ H    + + ++G +  AD +        +++  ++ ++    G+  
Sbjct: 198 CIDHPEVQTLASRIH---DRWVITYGANPQADIRFLNLSMEGQKACFDILIRSRKTGEKT 254

Query: 282 EV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           E+   +    G H   N    + I   L    +   K L+ F   +   +R+    N   
Sbjct: 255 EINNLILPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFGGVK---RRFTKTGNWNG 311

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
             + D+ Y  +P  +KA +    +         + PH   R   +  D       S  F+
Sbjct: 312 VEIFDD-YGHHPVEIKAVLHAARESAKGNIIAIMQPHRYTRLYHLFDDF------STCFN 364

Query: 390 -IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDV 446
             D   +  +Y      ++GF    L + +  + H  VH   +++ +   +      GD 
Sbjct: 365 DADTVMITPVYAAGEEPIAGFGSKELVEHIQMAGHRDVHLINSLEDIISIVSRLAKSGDY 424

Query: 447 VVVKSSNSC 455
           VV   + S 
Sbjct: 425 VVFLGAGSI 433


>gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 507

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 164/492 (33%), Gaps = 67/492 (13%)

Query: 6   TFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   +     G  H     P   V+ I+I+     P   F A+ G    G  F   A   
Sbjct: 4   TIERIATECAGELHLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKF---AGSS 60

Query: 64  GAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
            A  +V +            + PV   DD+   L  ++        +  T+I ITG+ GK
Sbjct: 61  QAAAIVTDKPGYEILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTSGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFG 163
           TTT  M+   L++   T   IG+    I                   L L      V   
Sbjct: 121 TTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVTHV 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKT 220
           + E+    +   R     V   IA+ T ++  HL     +E+    KA++F     L   
Sbjct: 181 VMEVSSHAIALGR--VGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAK 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK 279
            +  +  DD +   L  +       T+ +  K   A+F     +   + +    V  +GK
Sbjct: 239 KS-IICVDDKWGVDL-TRLAGPAATTVST--KGAPANFMATDIETEPDGTSQFTVAYKGK 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V  H  G     N  + +   +    DV T I  L+        G+  +   ++G  
Sbjct: 295 KQRVTLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQ---VPGRMEKIDNDKGVL 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D  Y   PA+++AAI     +    EGR IAV G     G         +    ++ 
Sbjct: 352 AVVD--YAHKPAALEAAIKA---VRDEVEGRVIAVFG----AGGDRDHGKRPIMGSAAVA 402

Query: 400 NISHVWLSGFHV---------LALKDALP---------RSIHVHYSETMDGLFLFIQSSL 441
               V ++  +           A++D            RS+ +              +  
Sbjct: 403 GADVVIITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKS 462

Query: 442 VDGDVVVV--KS 451
             GD ++V  K 
Sbjct: 463 QAGDAIIVAGKG 474


>gi|117928219|ref|YP_872770.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
 gi|189028966|sp|A0LTM4|MURC_ACIC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117648682|gb|ABK52784.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
          Length = 477

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 143/421 (33%), Gaps = 40/421 (9%)

Query: 57  ILHAVQK-GAGLVVVNTDMVASIGSLSIPVFGVDDV-----------LGALNKLAVAARL 104
           +L A++  GA + V +     S     +    V              L  L + A  A +
Sbjct: 55  VLAALRAFGARVTVGHDPAHLSDVDTVVASTAVPPTTPELAVARERGLPVLPRAAALASV 114

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +    +A+ G+ GKTTT  M+  AL             +    +   L     +   G 
Sbjct: 115 MAGRRGVAVAGTHGKTTTTSMVVRALQRCGA--------DPSFAIGADLGEPGSNAHDGT 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + ++   E      L+  H AV+T +   HL++++ +  I +A       +   G + 
Sbjct: 167 GSIFVAEADESDESFLLLPFHAAVVTNVEADHLNHYADLAAIHAAFDRFVAKVPDGGFLV 226

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
              DD   E + +++   G   +  +G S  AD +L   +     S   V + G  + E+
Sbjct: 227 ACTDDPGAEEIASRAARRGT-VVRRYGTSPRADVRLVDLRLEVAGSRFAVAMDGTVLGEL 285

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H A N    + +   L        + L+ F    G  +R++         + D
Sbjct: 286 QLRVPGAHNALNATAAVAVTVGLGFPFSEVAEGLADFT---GARRRFQPQGEVAGIRVFD 342

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  + A +     ++    GR   V+         +  F  +    L+L +   
Sbjct: 343 D-YAHHPTEIAATLRAARVVA--DGGR--LVVAFQPHHYYRTADFRTEFGAALALADEVV 397

Query: 401 ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +  V+  G   L                  V +  +   +   + +    GD++V   + 
Sbjct: 398 VMEVYAPGETPLPGGTGAALAAAVPLPGSAVVFEPSWSAVPEHLAARARPGDLIVTMGAG 457

Query: 454 S 454
            
Sbjct: 458 G 458


>gi|229163681|ref|ZP_04291629.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
 gi|228619818|gb|EEK76696.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
          Length = 436

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  +I   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRGISILPFDKNNIKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   FS I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYYPDYAIMTNIDFDHPDYFSDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|30022759|ref|NP_834390.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206969750|ref|ZP_03230704.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218233375|ref|YP_002369485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228910543|ref|ZP_04074357.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|228954966|ref|ZP_04116983.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960959|ref|ZP_04122591.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048395|ref|ZP_04193963.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|229072191|ref|ZP_04205399.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|229081944|ref|ZP_04214436.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|229112151|ref|ZP_04241693.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|229129967|ref|ZP_04258932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229147254|ref|ZP_04275609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229152887|ref|ZP_04281070.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|229181005|ref|ZP_04308340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|229194183|ref|ZP_04321039.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|296505155|ref|YP_003666855.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
 gi|33301350|sp|Q816X6|MURC_BACCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711860|sp|B7H746|MURC_BACC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29898318|gb|AAP11591.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 14579]
 gi|206735438|gb|EDZ52606.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218161332|gb|ACK61324.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228589274|gb|EEK47237.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228602562|gb|EEK60048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|228630707|gb|EEK87353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|228636212|gb|EEK92687.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228653492|gb|EEL09365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228671267|gb|EEL26569.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|228701532|gb|EEL54026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|228710929|gb|EEL62896.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|228723120|gb|EEL74497.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|228798739|gb|EEM45720.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804693|gb|EEM51295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228849107|gb|EEM93947.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|296326207|gb|ADH09135.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
          Length = 436

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKNNVEEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          S+ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MSQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|75760821|ref|ZP_00740837.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899844|ref|YP_002448255.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228903207|ref|ZP_04067341.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|228941870|ref|ZP_04104416.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228967789|ref|ZP_04128805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974796|ref|ZP_04135361.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981390|ref|ZP_04141690.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|226711859|sp|B7IKV4|MURC_BACC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74491675|gb|EAO54875.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540867|gb|ACK93261.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228778590|gb|EEM26857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|228784924|gb|EEM32938.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228791943|gb|EEM39529.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228817804|gb|EEM63883.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228856489|gb|EEN01015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|326942473|gb|AEA18369.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 436

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKNNVEEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          S+ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MSQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|313682069|ref|YP_004059807.1| mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154929|gb|ADR33607.1| Mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 480

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 119/346 (34%), Gaps = 30/346 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
               TI+ +TGS GKT+ K  +   L      YA   S N   G+   +   +P +    
Sbjct: 156 MKDLTIVCVTGSYGKTSMKNFIAQVLGQKFNVYATPRSVNTLGGIIRDVNESLPENTQVY 215

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G   +G+I  +  L+ P I V+  + P HL  F  +E I   K EI          
Sbjct: 216 ICEAGAREVGDIYAIAQLLHPQIVVVGKVGPQHLEYFKTLERIQRTKLEIIHSNRLKKAF 275

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                                + +  FG        +R  K   E    ++ ++G+    
Sbjct: 276 I-----------HTSVTNEPHEKVTFFGDD------VRNLKATLEGIDFDLNIEGEERHF 318

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + I S +    D  + A+      E R +R     + G   ++D
Sbjct: 319 HTSVLGGFQTININAAILIASEMGMSSDEIVGAVEKLKSVEHRLERI----DAGGKIILD 374

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + YN N   M   +    ++     GR++ V   + E    ++  + +L   ++      
Sbjct: 375 DGYNGNIDGMLEGV----RLCSLHPGRKVIVTPGLVES---TEELNSELISAINGV-FDI 426

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++G    A  D   R            +   +      GD+++ 
Sbjct: 427 AIITGSLNAAQFDKELRVPQKIMLADKSQMVKTLGEVTKAGDIILF 472


>gi|319651887|ref|ZP_08006010.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
 gi|317396379|gb|EFV77094.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
          Length = 431

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 149/435 (34%), Gaps = 65/435 (14%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           ++G  ++ H F   A++K    ++         G   I      D    + +        
Sbjct: 28  VQGSDFEKHFFTQVALEKSGIKILPFQKENIQPGMTVIAGNAYPDTHEEIEEAMKLGLPV 87

Query: 106 SKATI-----------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
            +              IA+TG+ GKT+T  +L   +   K T   IG             
Sbjct: 88  VRYHRFLGDFMKNFTSIAVTGAHGKTSTTGLLAHVMRGAKPTSFLIGDG---------TG 138

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +   + ++ +FE       E R       P  A++T I   H   F+ IE++ SA  E+ 
Sbjct: 139 KGDKEAEYFVFEA-----CEYRRHFLSYYPDYAIMTNIDFDHPDYFANIEDVFSAFQEMS 193

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             + K   IF   DD   + ++AK        +  +G  ++ DFQ R   + +E +  +V
Sbjct: 194 WQVNKG--IFACGDDEQLQKIQAKV------PVVFYGFGEDNDFQARNVVKTTEGTTFDV 245

Query: 275 QLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++    E       G H   N L  + +      D     + L  F   +      R +
Sbjct: 246 FVRNTFFETFSIPAYGDHNVLNSLAVIALCHYEEIDAKIVQEQLLSFEGVK-----RRFS 300

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +    +I + Y  +P  +KA +    Q  P  +   +AV          +Q+F  D A
Sbjct: 301 EKKVGSQVIIDDYAHHPTEIKATVEAARQKYPEKD--VVAVF--QPHTFTRTQAFLDDFA 356

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL------------ 441
             L+L     V+L         +    +   H   T+D L   I ++             
Sbjct: 357 SSLNL--ADKVYLC--------EIFGSARENHGKLTIDDLKAKIPNAQILNEEETAVLRN 406

Query: 442 VDGDVVVVKSSNSCG 456
            +  V++   +    
Sbjct: 407 HEDSVIMFMGAGDIQ 421


>gi|89100115|ref|ZP_01172984.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
 gi|89085205|gb|EAR64337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
          Length = 431

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 131/371 (35%), Gaps = 52/371 (14%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    K T +A+TG+ GKT+T  +L   +   K T   IG             R  
Sbjct: 91  HRFLGDFMKKFTSVAVTGAHGKTSTTGLLAHVMKGAKPTSFLIGDG---------TGRGD 141

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D ++ +FE       E R       P  A++T I   H   F+ I+++ SA  E+   +
Sbjct: 142 ADAEYFVFEA-----CEYRRHFLSYFPDYAIMTNIDFDHPDYFANIDDVFSAFQEMSWQV 196

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K   IF   DD   + ++AK        +  +G  +  DFQ R   + +E +  +V ++
Sbjct: 197 NKG--IFACGDDEQLQKIQAKV------PVLFYGFGEENDFQARNVIKSTEGTTFDVFVR 248

Query: 278 GKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               +       G H   N L  + +      D +     L  F   + R    + A   
Sbjct: 249 NTFYDTFSIPQFGDHNVLNSLAVIALCHYEEIDSEIVKDLLLTFEGVKRRFSEKKVASQ- 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +I + Y  +P  ++A +    Q  P  E   +AV          +Q+F  D AE L
Sbjct: 308 ----VIIDDYAHHPTEIRATVEAARQKYPEKE--IVAVF--QPHTFTRTQTFLDDFAESL 359

Query: 397 SLYNISHVWLSGFHVLA-----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +      V+L      A           L+D +P S  +   E    L         +  
Sbjct: 360 NK--ADKVYLCDIFGSARENHGKLTITDLQDRIPSS-EIMKEEDTSALKQH------ENS 410

Query: 446 VVVVKSSNSCG 456
           V++   +    
Sbjct: 411 VILFMGAGDIQ 421


>gi|317473718|ref|ZP_07933005.1| UDP-N-acetylmuramate-alanine ligase [Anaerostipes sp. 3_2_56FAA]
 gi|316898839|gb|EFV20866.1| UDP-N-acetylmuramate-alanine ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 460

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 147/415 (35%), Gaps = 44/415 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    +   +     IP+     +LG +      A        +A++G+ GKTTT  M
Sbjct: 77  AAIHPENEEYKAALQKGIPLMKRATLLGQMMHNYKNA--------VAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L          G  +  I V   L  +  ++  G   + ++   E         P 
Sbjct: 129 LSHIL--------LAGETDPTITVGGILDIIDGNIRVGHSNVFVTEACEYTNSFLEFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  I   H+  F  I EI  +  +    L + G + LN +      +     A    
Sbjct: 181 ISIILNIEEDHMDFFHDINEIRDSFKKFAHKLPEDGLLVLNGEIDDISYIVEGLKA---- 236

Query: 246 TIYSFGKSKN-ADFQLRKWKQCS-EQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
              ++G   +   +  +     S      ++  +G  ++ +  +  G H   N L    +
Sbjct: 237 KYVTYGIDNDEFTYTAKNISYDSMGHGHFDLYKEGTFVDSLSLNVNGLHNINNALSAAAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +DT    L  F    G  +R+      G FT+ID+ Y  +P  +KA ++    
Sbjct: 297 ADFLGLSIDTVKAGLLTFS---GAKRRFEYKGTCGGFTVIDD-YAHHPTEIKATLNACKN 352

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R  A L +  E   LSQ  H+ + ++ +            H   
Sbjct: 353 YPHKELWCVFQPHTYTRTNAFLDEFAE--ALSQCDHVIITDIYAAREKD---TGMVHARD 407

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L D + +    V Y +  D +  FI       D+++   + +     + N L+++
Sbjct: 408 LADKIEKTGTDVRYIKDFDAIEEFILKKCKKNDLLITMGAGNV--DSIGNELVKK 460


>gi|319407502|emb|CBI81150.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. 1-1C]
          Length = 456

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 154/429 (35%), Gaps = 60/429 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A   GA  VV+             +     +PV    ++L  L +        
Sbjct: 39  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKRHLPVVKRAEMLAELMRFRR----- 89

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI G+ GKTTT  M+   L +    +  I      I    T ARM  D D+ + 
Sbjct: 90  ----TIAIGGTHGKTTTTSMVAALLDA--GCFDPIVINGGIINAYGTNARM-GDGDWMVV 142

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    ++     +   IAV+T I   HL ++     I  A  +  E +   G   +
Sbjct: 143 EADESDGTFLK-----LPADIAVVTNIDVEHLDHYGNFNAIREAFRQFVENVPFYGFAVM 197

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSM 281
             D    + L ++ H    + + ++G +  AD +        +++  ++ ++    G+ +
Sbjct: 198 CIDHPEVQTLASRIH---DRWVITYGANPQADIRFLNLSMEGQKACFDILIRSRKTGEKI 254

Query: 282 EV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           E+   +    G H   N    + I   L    +   K L+ F   +   +R+    N   
Sbjct: 255 EISNLILPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFGGVK---RRFTKTGNWNG 311

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
             + D+ Y  +P  +KA +    +         + PH   R   +  D       S  F+
Sbjct: 312 VEIFDD-YGHHPVEIKAVLHAARESAKGNIIAIMQPHRYTRLYHLFDDF------STCFN 364

Query: 390 -IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDV 446
             D   +  +Y      ++GF    L + +  + H  VH   +++ +   +      GD 
Sbjct: 365 DADTVMITPVYAAGEEPIAGFGSKELVEHIQMAGHRDVHLINSLENVISIVSRFAKSGDY 424

Query: 447 VVVKSSNSC 455
           VV   + S 
Sbjct: 425 VVFLGAGSI 433


>gi|228923443|ref|ZP_04086729.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836228|gb|EEM81583.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKNNVEEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
 gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
          Length = 432

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 99/470 (21%), Positives = 161/470 (34%), Gaps = 76/470 (16%)

Query: 1   MNPLWT-FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY- 51
           M+PL    HD    +QG  I         + +  +  +  D  +I P     A  G  + 
Sbjct: 14  MSPLAQILHDTGYTVQGSDIEKHIFTQKALEERNIKILPFDPDNIQPGMTVIA--GNAFP 71

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D H  I  A+ +G                  IPV      LG               T +
Sbjct: 72  DTHPEIERALSEG------------------IPVIRYHKFLGEYMD---------TFTNV 104

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GKT+T  +L   + S K T   IG  +              + ++ +FE     
Sbjct: 105 AITGAHGKTSTTGLLAHVMQSAKPTSYLIGDGSGMGK---------ENSEYFVFEA---- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E R       P  A++T I   H   FS I+++  A   +   ++K   I    DD  
Sbjct: 152 -CEYRRHFLSYHPDYAIMTNIDFDHPDYFSDIDDVFDAFQNMALQVKK--AIIACGDDEH 208

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGY 290
              ++AK        +  +G ++  DFQ R   + +E +  +V ++    +       G 
Sbjct: 209 LPKIQAKV------PVVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYGN 262

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + +      DV+    AL+ F   + R          G   LID+ Y  +P
Sbjct: 263 HNVLNSLAVIALCHYEAIDVELIKGALTTFGGVKRRFNEKVV----GEQVLIDD-YAHHP 317

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             ++  I    Q  P  E   +AV          +Q F  + A+ L      +V+L    
Sbjct: 318 TEIEVTIEAARQKYPDRE--IVAVF--QPHTFTRTQQFLSEFADSLKK--ADYVYLCDIF 371

Query: 411 VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV-KSSNSCG 456
             A ++    SI            +     S L    D ++V   +    
Sbjct: 372 GSARENIGKLSIEDLREKIPQAQLIAEEDTSVLKAHKDGILVFMGAGDIQ 421


>gi|301056196|ref|YP_003794407.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis CI]
 gi|300378365|gb|ADK07269.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 436

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKSNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|332673458|gb|AEE70275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 83]
          Length = 493

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 137/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR+I V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKIIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|304392255|ref|ZP_07374197.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
 gi|303296484|gb|EFL90842.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
          Length = 472

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 140/410 (34%), Gaps = 47/410 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +        + S+P+    ++L  L +   A         +A+ G+ GKTTT  M+
Sbjct: 75  AIKEDNPERMEAKARSLPIVRRAEMLAELMRFKQA---------VAVGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +        G  +  I     L  +  +   G     ++   E       +   +
Sbjct: 126 GALLEA--------GGLDPTIINGGILNAIGTNARMGDGAWMVAEADESDGSFLKLPATV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I P HL ++   +    A     E L   G   +  D    + L A+      + 
Sbjct: 178 AVVTNIDPEHLDHYKTFDRAKKAFRRFIENLPFYGFGVMCIDHPEVQALVARVE---DRR 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMT 299
           + ++G +  AD + R  +    ++  +V +Q +                G H   N    
Sbjct: 235 LVTYGNNPQADVRFRNVRAQGAKNIFDVVIQDRRSPDAIELNDLELPMPGIHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L          L+ F   +G  +R+    +     + D+ Y  +P  + A +  
Sbjct: 295 IAVAWQLGVGAQEIRDGLAAF---KGVRRRFTHTGSWNGVEVFDD-YAHHPVEISAVLKA 350

Query: 360 LSQI---SPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLS 407
                       GR IA+        L D+ E  E +  F+  D   V  +Y      + 
Sbjct: 351 ARSAVRSGDGTGGRVIAIKQPHRYTRLDDLFE--EFAACFNDADTVYVAPVYAAGEQPID 408

Query: 408 GFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +  +L +A+  S H  V   E  + +   I++    GD V+   +   
Sbjct: 409 NRNAASLAEAIRSSGHRDVQAIEGREAIADLIRAKAKPGDYVLFLGAGDI 458


>gi|260896399|ref|ZP_05904895.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
 gi|308087557|gb|EFO37252.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
          Length = 398

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 121/354 (34%), Gaps = 34/354 (9%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H A N    + + +    + D  +KA++       R              ++ 
Sbjct: 288 TLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLV 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           + Y  +P  +   I          + R + +          ++  + D A  LS
Sbjct: 348 DDYGHHPTEVDVTIKAARS--GWQDKRLVMIF--QPHRYSRTRDLYDDFATCLS 397


>gi|229019918|ref|ZP_04176714.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
 gi|229026149|ref|ZP_04182520.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228735158|gb|EEL85782.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228741383|gb|EEL91587.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
          Length = 436

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  +I   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRGISILPFDKNNIKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ + ++ +A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYYPDYAIMTNIDFDHPDYFTDVNDVFNAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|30264759|ref|NP_847136.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47530235|ref|YP_021584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187576|ref|YP_030829.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|52140819|ref|YP_086015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|65322056|ref|ZP_00395015.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bacillus anthracis
           str. A2012]
 gi|118479825|ref|YP_896976.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|165869729|ref|ZP_02214387.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167634042|ref|ZP_02392365.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|167637992|ref|ZP_02396270.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|170685837|ref|ZP_02877060.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|170705461|ref|ZP_02895925.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|177651186|ref|ZP_02934017.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190568261|ref|ZP_03021169.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032962|ref|ZP_03100375.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196040822|ref|ZP_03108120.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196043730|ref|ZP_03110967.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|218905917|ref|YP_002453751.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225866676|ref|YP_002752054.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB102]
 gi|227817477|ref|YP_002817486.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228917339|ref|ZP_04080893.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929741|ref|ZP_04092758.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948436|ref|ZP_04110719.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093789|ref|ZP_04224888.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|229124255|ref|ZP_04253447.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|229186944|ref|ZP_04314098.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|229602579|ref|YP_002868966.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|254687497|ref|ZP_05151353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725061|ref|ZP_05186844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           A1055]
 gi|254736798|ref|ZP_05194504.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741835|ref|ZP_05199522.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Kruger B]
 gi|254754567|ref|ZP_05206602.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Vollum]
 gi|254757399|ref|ZP_05209426.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Australia 94]
 gi|300118871|ref|ZP_07056584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
 gi|33301353|sp|Q81KQ2|MURC_BACAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798169|sp|Q633A2|MURC_BACCZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222955|sp|A0RJS6|MURC_BACAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711858|sp|B7JS63|MURC_BACC0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763737|sp|C3PBF0|MURC_BACAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763738|sp|C3L9Z3|MURC_BACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763739|sp|C1EV43|MURC_BACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30259434|gb|AAP28622.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47505383|gb|AAT34059.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181503|gb|AAT56879.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|51974288|gb|AAU15838.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|118419050|gb|ABK87469.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|164714558|gb|EDR20077.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167513809|gb|EDR89177.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|167530843|gb|EDR93545.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|170129586|gb|EDS98449.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|170670301|gb|EDT21041.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|172083012|gb|EDT68074.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190560517|gb|EDV14494.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994391|gb|EDX58346.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196025066|gb|EDX63736.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|196028276|gb|EDX66885.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|218539138|gb|ACK91536.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225790517|gb|ACO30734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 03BB102]
 gi|227004616|gb|ACP14359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228596498|gb|EEK54164.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228659557|gb|EEL15205.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|228689674|gb|EEL43482.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|228811423|gb|EEM57761.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829920|gb|EEM75540.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842329|gb|EEM87423.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229266987|gb|ACQ48624.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|298723716|gb|EFI64445.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
          Length = 436

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKSNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
 gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
          Length = 473

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 43/411 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                +   VA+  +  IP+     +LG L    V          +A+ G+ GK+TT  M
Sbjct: 82  AAAPESNPEVAAARARGIPIIKRAALLGRLCDERVC---------LAVAGTHGKSTTSGM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL    +        +    V   +  +  +   G     ++   E  +    + P 
Sbjct: 133 LALALVHAGE--------DPSFAVGAVVKELGTNARPGAGPFFVAEADEYDYSFLWLHPD 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I   H   F   E +  A      G+   GT+ ++ DD     L A+       
Sbjct: 185 VAVVTNIEHDHPDLFPSRESVLEAFTRFVSGMRPDGTLVVSADDPGCRDLLARL-GDRRP 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG   NAD+ + + ++      +     G+++ +     G+H   N L  L     
Sbjct: 244 RVVTFGSDPNADWSIVRDEETGSGDLVRA-PGGRTLRLRLAVPGWHNRLNALAALAAGEA 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  +  L+ F    G G+R+         T++D+ Y  +P  ++A I    +  P
Sbjct: 303 AGVAPERLLPGLAAFG---GVGRRFEVRGQARGVTVVDD-YAHHPTEIRATIEAARERYP 358

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLAL 414
               R  AV          ++    D A  LSL    +V L+           G     +
Sbjct: 359 A--ARLWAVF--QPHTYSRTREMLDDFAAALSL--ADYVVLAPIYAARETNDLGVSSADI 412

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +     V   E+       + +    GDVV++  +     ++    LL
Sbjct: 413 AGRMA-GRPVVVVESPAAAGEVVAADAEAGDVVLILGAGDI--WKAGERLL 460


>gi|228935998|ref|ZP_04098808.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823766|gb|EEM69588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKSNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|326382560|ref|ZP_08204251.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198679|gb|EGD55862.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 492

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 135/426 (31%), Gaps = 52/426 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +       IPV    +VL  L +             + I+G+ GKT+T  M
Sbjct: 86  AAVPDDNPELVEARRRGIPVVYRPEVLALLMQGDR---------TVLISGTHGKTSTTSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +AL             +    V   L     +   G  ++ ++   E         P 
Sbjct: 137 SVVALQHCG--------VDPSFAVGGELNESGTNAHHGSGDVFVAEADESDGSLLQYTPD 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   HL  F           +    +   GT+ L  DD     L A+  A   +
Sbjct: 189 IVVVTNIEADHLDFFGSEAAYVQVFDDFVALIRSGGTLVLCLDDPGAAALAARCQADCAR 248

Query: 246 ---TIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQL------QGKSMEVVHHGIG 289
              T+  +G + +          +L         S   V+L      + ++ E+     G
Sbjct: 249 RGVTVLGYGSTGHTPVDGVPVVAELAAVVPHGAGSVATVRLSSPLVEKAQTRELAVTLPG 308

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HMA N L  L   +    DVD     +  F    G  +R+          + D+ Y  +
Sbjct: 309 RHMALNALGALIACTRTGQDVDAVAAGIESFG---GVHRRFELRGRARDVDVYDD-YAHH 364

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYN 400
           P  ++A ++   ++   G GR IAV      +   +  F     E         V  +Y 
Sbjct: 365 PTEVRAVLTAAREVVAAGSGRVIAVF--QPHLYSRTAEFAPQFGEALSLADDVIVADVYG 422

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS--CGFY 458
                  G     + DA+  +    +      +   +      GD+V+   +        
Sbjct: 423 AREQPQPGVTGRLISDAV--AGPAAFVPDASRIADAVAERARRGDLVLTIGAGDITMQAP 480

Query: 459 RLINLL 464
            ++  L
Sbjct: 481 AILEAL 486


>gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
 gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
          Length = 505

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 143/416 (34%), Gaps = 44/416 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
               +  V  ++ DSR +     F   KG  +   +++  A++KGA   V          
Sbjct: 25  NGEEEKNVGYLTYDSREVTEGTLFIC-KGAAFKA-EYLDAAIEKGAIAYVSEVKYETKED 82

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL-----SS 132
              +P F VDD+  A+  LA           TI  I G+ GK+T+   +   +     ++
Sbjct: 83  ---VPYFLVDDIRKAMPPLAEKFNNAPWKKLTITGIGGTKGKSTSAYYMKAIVDDYMEAT 139

Query: 133 IKKTYACIGSYN---------NHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFL 178
             K  A + S +         +HI  P ++      R  V+      E+ +S        
Sbjct: 140 GGKESAVLSSIDIYDGVIKKESHITTPESVELQEHLRHAVESGITFAEMEVSSQALKYNR 199

Query: 179 THLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              ++  + +   I+  H+S       E+  S+K +IF    K+    +N D  F + + 
Sbjct: 200 VDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIF---GKSRYGVVNMDADFADRIL 256

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +S     + + +F  K+  AD    + ++   ++   V+ +    E      G    +N
Sbjct: 257 KESKV--CEKVLTFSTKNPEADVYGYEIQKDGHETVFMVKTELFDEEFRLTMPGLFNVEN 314

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  +    +L    +     L           R     +     +    Y  N  S + 
Sbjct: 315 ALAVIAASILLEIPKEYMHSGLLRARSSG----RMELYGSADKNLIAVVDYAHNKLSFEK 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             S +    P      +++ G     G+ +     DL  V   Y    V+L+    
Sbjct: 371 LFSSIKDEYPDYN--IVSIFGCP---GKKAFIRRRDLGTVAGQY-AKKVYLTAEDP 420


>gi|42783876|ref|NP_981123.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10987]
 gi|49481451|ref|YP_038734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206978123|ref|ZP_03239006.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217962174|ref|YP_002340744.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH187]
 gi|228987941|ref|ZP_04148048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141422|ref|ZP_04269960.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229158298|ref|ZP_04286365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|229198852|ref|ZP_04325544.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|48428295|sp|P61675|MURC_BACC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798279|sp|Q6HCJ2|MURC_BACHK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711861|sp|B7HSM3|MURC_BACC7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42739806|gb|AAS43731.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 10987]
 gi|49333007|gb|AAT63653.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206743659|gb|EDZ55083.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217066938|gb|ACJ81188.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH187]
 gi|228584626|gb|EEK42752.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|228625256|gb|EEK82016.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228642203|gb|EEK98496.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228771806|gb|EEM20265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|324328581|gb|ADY23841.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 436

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKSNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|225872731|ref|YP_002754188.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
 gi|254763733|sp|C1F455|MURC_ACIC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225793538|gb|ACO33628.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 458

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 146/409 (35%), Gaps = 48/409 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V    +  IPV    ++L  L +L            IA+ G  GKTTT  M+   L++
Sbjct: 79  PEVREARARKIPVIQRAEMLAELMRLKYG---------IAVAGMHGKTTTTSMIASVLAA 129

Query: 133 --IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +  T    G     +    + AR+     + + E   S    ++     + P + V+T
Sbjct: 130 GELDPTVVVGG----RVDALGSNARLGNSH-YLVAEADESDRSFLK-----LSPILTVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+  +  + ++  A  E    +   G      D+     L  +      + ++++
Sbjct: 180 NLDREHMDCYRDMADVEDAFLEFMNRVPFYGANVACIDNPQLAALLPRVR----RRVFTY 235

Query: 251 GKSKNADFQLRKWKQCSE-QSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           G S  ADF +R      E +S  E+   Q        H  G H   N    + I   L  
Sbjct: 236 GTSLGADFVVRMLPPAPEVRSRFEIASAQSVLGPFDLHVPGIHNVLNAAAAVAIAVQLDL 295

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362
                ++ L  F   +   +R++        T+ID+ Y  +P  ++A +           
Sbjct: 296 KEQAIVQGLKSFRGVD---RRFQLKGVVDGITIIDD-YGHHPTEIRATLRAARDCGYANI 351

Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                PH   R   +L +       + +      E+L +Y  S   L G    AL  ++ 
Sbjct: 352 HVLFQPHRYSRTRDLLDEFVTSFADAST-----VEMLDIYAASEAPLPGITSAALVQSIG 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +   V Y+ + +     I      GD+++   + +    +L  LL+E  
Sbjct: 407 QPG-VRYAASTEEAVTAILDRAAPGDLILTLGAGNV--SQLAPLLVERL 452


>gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae 70585]
 gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae 70585]
          Length = 481

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 164/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+  H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISQDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +N DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQNHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENSVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|308174670|ref|YP_003921375.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607534|emb|CBI43905.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554600|gb|AEB25092.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           TA208]
 gi|328913005|gb|AEB64601.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           LL3]
          Length = 432

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 158/473 (33%), Gaps = 82/473 (17%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSI----------APQEAFFAIKGP 49
           M+PL     +L        G   +  +    +++ R+I           P     A  G 
Sbjct: 14  MSPL---AQILHDTGYQVQGSDIEKQIFTQAALEKRNIPIYPFSADNIKPGLTVIA--GN 68

Query: 50  HY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            + D H  I  A+ +G                  IPV      L    K         K 
Sbjct: 69  AFPDSHPEIAKALAEG------------------IPVIRYHKFLAEYMK---------KY 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  +L   +   K T   IG             +     ++ +FE  
Sbjct: 102 TSVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGDG---------TGKGNESSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R      +P  A++T I   H   F+ I+++  A   +   + K   I    D
Sbjct: 152 ----CEYRRHFLSYQPDYAIMTNIDFDHPDYFANIDDVFDAFQNMALQVNKG--IIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHG 287
           D +   + A         +  +G  +  DFQ R   + +E +  +V ++    +      
Sbjct: 206 DEYLPKIHANV------PVVYYGTGEENDFQARNIVKNTEGTTFDVFVRNTFYDTFYIPA 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L  + +      DV+     L  F   + R          G   LID+ Y 
Sbjct: 260 YGHHNVLNSLAVIALCHYEEIDVNMIKLGLESFGGVKRRFNEKVI----GSQVLIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +K  I    Q  P  E   IAV          +QSF  + AE LS      V+L 
Sbjct: 315 HHPTEIKVTIEAARQKYPERE--IIAVF--QPHTFTRTQSFLDEFAESLS--AADRVYLC 368

Query: 408 GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCG 456
                A ++    +I       +  + +     S L   +  V++   +    
Sbjct: 369 DIFGSARENVGKLTITDLQEKIDNAELIEENDTSVLKAHENAVLIFMGAGDIQ 421


>gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 486

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 152/458 (33%), Gaps = 65/458 (14%)

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--------MVASIGSLSIPVFGV 88
           + P + F A+ G    G DF   A+  GA  V+ +              + +  + +   
Sbjct: 1   MRPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVH 60

Query: 89  DDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           DD   AL      +      +  I+ +TG+ GKTTT  +L  AL++   T   +G+    
Sbjct: 61  DDPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETR 120

Query: 147 IGV------------PLTLARMPVDVDFGI----FELGMSHLGEIRFLTHLVRPHIAVIT 190
           I              P   A + V V+ G+     E+    L   R      R  +   T
Sbjct: 121 IAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGR--VSGTRFTVGGFT 178

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +++   AKA +F+G  +     +  D  +   L             + 
Sbjct: 179 NLSQDHLDFHRDLDDYFQAKALLFDGRSEHE--VVCTDTDWGRKLVKPG-------TITV 229

Query: 251 GKSKNADFQLRKWKQCSEQ-SWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             + +A +     +              G  S+ +     G     N L+ +GI+     
Sbjct: 230 STTGDASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEV 289

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                          +  G+  R AL Q F  ++D  Y+  P ++ A +      +   E
Sbjct: 290 PTWAI---ERGLAEVDVPGRMERVALGQDFTAVVD--YSHKPGAVSAVLDAARAQA---E 341

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLALKDA 417
           GR I VLG     G+   +    + E  +  +   +                 +LA  +A
Sbjct: 342 GRVIVVLGC---GGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEA 398

Query: 418 LPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +P +      E            +    GD+VVV  K 
Sbjct: 399 VPAAERGEVIERGDRREAIAEAVARASSGDIVVVAGKG 436


>gi|148907754|gb|ABR17003.1| unknown [Picea sitchensis]
          Length = 583

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H+A N      +   L   +    K+L+ F P +    R      +    +I++
Sbjct: 401 IPSPGLHLAMNACAAGAVAVSLGIPLPQVGKSLANFRPAK---MRLNIENCKNKIRIIND 457

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP SM AA+ +L  I    +GRR+A+LGDM E+G+  +  H+D+ ++     I  V
Sbjct: 458 AYNANPVSMVAALELLHSID--CKGRRVAILGDMLELGKFGKKAHLDVIKLCLELGIELV 515

Query: 405 WLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            ++G      + + D       V  +   + L   I      GDVV+VK S       ++
Sbjct: 516 GIAGLQFMEAIKVADLTSAEFSVISALDSESLASQIGKKFTAGDVVLVKGSRGMRMEVIV 575

Query: 462 NLLL 465
           +++ 
Sbjct: 576 DVIR 579


>gi|221065139|ref|ZP_03541244.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
 gi|220710162|gb|EED65530.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
          Length = 477

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 158/443 (35%), Gaps = 54/443 (12%)

Query: 56  FILHAVQKGAG--------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA +  AG         V  +   V +     IPV     +L  L +          
Sbjct: 54  FVGHAAENVAGTDAVVTSTAVQGDNPEVLAAREKKIPVVPRALMLAELMRFKQG------ 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IAI G+ GKTTT  ++T  L+         IG   N  G    L       D+ + E
Sbjct: 108 ---IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIGGKLNSAGANAKLG----HGDYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +  L     P +AV+T I   H+  +      +  A  +    +   G   L
Sbjct: 161 ADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGRAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SM 281
             D      +  +      + + ++G +++A  +    +  + +    V+ Q       +
Sbjct: 216 CVDSPAVREILPRLA----RPVTTYGFAEDAQVRAVNVRAEAGRMRFTVRRQNGQSYPDL 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFT 340
           EVV    G H   N L  + +   L    +  ++AL  F     R +RY       G   
Sbjct: 272 EVVLSLPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGELPAADGNMF 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + + Y  +P  M A ++      P        VL         ++    D  +V+   +
Sbjct: 332 TVIDDYGHHPVEMAATLAAARGAFPGQR----LVLAFQPHRYSRTRDCFEDFVKVIGSAD 387

Query: 401 ---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449
              ++ V+ +G   +   D   L R++ V       + E +  +   I ++   GDV++ 
Sbjct: 388 SVLLAEVYAAGEAPIVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQAGDVLLC 447

Query: 450 KSSNSCGF--YRLINLLLEEFPA 470
             + S G    +L+ +L ++ PA
Sbjct: 448 MGAGSIGAVPGKLVEMLQKQEPA 470


>gi|15611744|ref|NP_223395.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori J99]
 gi|4155222|gb|AAD06244.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
          Length = 493

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 134/345 (38%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         +R  +   + +  E  + G       
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVRNVQSTLKGTSFETLINGVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +    P   R +            +ID+S
Sbjct: 334 KVLGEFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLE----ANQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   +GR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLHQGRKVIVTPGLVESNTES---NEALAQKIDGV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASKLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|327194621|gb|EGE61471.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli
           CNPAF512]
          Length = 471

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 158/432 (36%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +PV    ++L  L +   A
Sbjct: 54  EVFVGHR----AENLGDAEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFRNA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI G+ GKTTT  ++   L +       I      I    T ARM    +
Sbjct: 110 ---------IAIGGTHGKTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-E 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   +AVIT I P HL ++   + + +A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + L  +      + I ++G++  AD + +  +    +S  +V+++ +  
Sbjct: 213 FGVMCLDHPEVQSLVGRIE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRT 269

Query: 282 EVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             V           G H   N    + + + L        K L+ F   +   +R+    
Sbjct: 270 GQVTELKGLVMPMPGRHNISNATAAIAVANRLGISSVDIAKGLASFGGVK---RRFTLTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
                 + D+ Y  +P  +KA   VL       +GR IAV        L  + E  E + 
Sbjct: 327 EWNGVQIFDD-YGHHPVEIKA---VLRAAREACKGRIIAVHQPHRYSRLASLFE--EFAA 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   +  +Y      + G    +L   +    H    +  + + L   +      
Sbjct: 381 CFNDADSIFLAPVYAAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV+  + S 
Sbjct: 441 GDFVVLLGAGSI 452


>gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. A1055]
 gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Kruger B]
          Length = 243

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                  + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 1   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G
Sbjct: 118 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKG 167


>gi|229076197|ref|ZP_04209165.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
 gi|229099168|ref|ZP_04230102.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228684396|gb|EEL38340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228707060|gb|EEL59265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
          Length = 436

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 147/410 (35%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++  A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFADINDVFGAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|229118178|ref|ZP_04247537.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
 gi|228665401|gb|EEL20884.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
          Length = 436

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 147/410 (35%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKNNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++  A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFADINDVFGAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|194337859|ref|YP_002019653.1| UDP-N-acetylmuramate/alanine ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229620054|sp|B4SH48|MURC_PELPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194310336|gb|ACF45036.1| UDP-N-acetylmuramate/alanine ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 479

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 138/394 (35%), Gaps = 44/394 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKK 135
           +     IPV   D++LG L +             I I G+ GKTTT  M+   L  S + 
Sbjct: 85  AAEKAGIPVIKRDEMLGELMRYTYG---------ICIAGTHGKTTTTAMIATMLIESDES 135

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               IG  ++++     +     +  + + E       E       + P IAV+ ++   
Sbjct: 136 PTVMIGGISDYLKGSTVVG----EGKYMVIEA-----DEYDRAFLKLTPTIAVVNSLESE 186

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+  +  ++E+  A       +   G +    D      +  K + L      +FG  + 
Sbjct: 187 HMDTYGTLDELKEAFVAFANKVPFYGRVICCVDWPEIRKIMPKMNRLCT----TFGIDEP 242

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD         ++ +   ++  G+    V     G H   N L        L    +  I
Sbjct: 243 ADVMAFDIVLDNQHTTFSIKAFGQEYRDVSLQVPGRHNVLNALAAFSTGLELGILPERLI 302

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              +      G  +R++   + G   ++ + Y  +P  +KA +          + R +AV
Sbjct: 303 ---AGLGRYSGMRRRFQVKYDNGHGLMVVDDYAHHPTEVKATVRAAKS--GWRDSRIVAV 357

Query: 375 LGDMCEMGELSQSF---------HIDLAEVLSLYNISH--VWLSGFHVLALKDALPR--S 421
                 +   ++ F         H D+  V  +Y      V   G     + DA+ +   
Sbjct: 358 F--QPHLFSRTREFAHEYGWALSHADMVYVADIYPAREKGVDYPGVDGELIADAVRKAGG 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            HV +   M  LF  ++   V+G++++   +   
Sbjct: 416 KHVEFVADMQNLFTALKEWSVNGNMLLFMGAGDI 449


>gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Australia 94]
 gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
          Length = 243

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                  + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 1   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G
Sbjct: 118 DIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKG 167


>gi|188582368|ref|YP_001925813.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium populi
           BJ001]
 gi|229620045|sp|B1ZGP5|MURC_METPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|179345866|gb|ACB81278.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium populi
           BJ001]
          Length = 468

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 145/426 (34%), Gaps = 54/426 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+  A +VV          +       +PV    ++L  L +        
Sbjct: 56  FVGHR--AENVENAALVVVSTAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSC---- 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                +A+ G+ GKTTT  ++   L +  +  T    G  N +     T ARM    D+ 
Sbjct: 110 -----VAVAGTHGKTTTTSLVATLLDAGNLDPTVINGGIINAY----GTNARMGAG-DWM 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    ++     +   +A++T I P HL +F   + I  A     + +   G  
Sbjct: 160 VVEADESDGTFLK-----LPADVAIVTNIDPEHLDHFGSFDAIKDAFRRFIDNIPFYGFA 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--- 280
            +  D    + L         + I ++G++  AD +L        QS   V ++ +    
Sbjct: 215 VMCIDHPIVQDLVGHIE---DRRIITYGENPQADVRLIDIDLKGGQSRFRVMIRDRRPGF 271

Query: 281 ----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++V    G H A N    L +   L    D   KAL+ F   + R  R      +
Sbjct: 272 RLEMQDLVLPMPGRHNALNATAALAVAHELGVSEDAIRKALAGFGGVKRRFTR----TGE 327

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----H 389
                I + Y  +P  + A   VL       +G+ IAV+       +  L + F      
Sbjct: 328 WNGAAIFDDYGHHPVEIAA---VLRAARSSTDGKVIAVVQPHRYTRLQSLFEDFCTCFND 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
            D   V  +Y      + G    +L   L    H      E  + L   +       D V
Sbjct: 385 ADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVSGRAEPNDYV 444

Query: 448 VVKSSN 453
           V   + 
Sbjct: 445 VCLGAG 450


>gi|22297914|ref|NP_681161.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosynechococcus
           elongatus BP-1]
 gi|34222674|sp|Q8DLV5|MURC_THEEB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22294092|dbj|BAC07923.1| UDP-N-acetylmuramate-alanine ligase [Thermosynechococcus elongatus
           BP-1]
          Length = 475

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 141/403 (34%), Gaps = 47/403 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     +   L  P+F   DVL AL           ++  IA+ G+ GKTTT  M
Sbjct: 78  SAIRSDNPEYLAAQHLGCPIFHRSDVLAAL---------MHRSQSIAVAGTHGKTTTSSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L             +  I V   +A    +   G     ++   E         PH
Sbjct: 129 IAYLLLQAG--------LDPTIIVGGEVAAWQGNARVGQSRYLVAEADESDGSLRKFHPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I   H  +++ +EE+ +   +  +  E    +    D             L   
Sbjct: 181 IGVITNIELDHPDHYNSLEEVVATFQQFADQAE---IVIACADCPNIR------DRLHHP 231

Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGI 302
            + ++   + A  D+ +   +  +E +   V  +G S+ +   + +G H  QN L  + +
Sbjct: 232 RLLTYSLQRQAAVDYCVDHIQYTAEGTTARVWERGTSLGILQLNVLGAHNLQNALAVIAV 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV--L 360
              L  D  T   AL  F    G  +R+           ID+ Y  +P+ + A +    L
Sbjct: 292 GRYLGIDFATIAAALLEF---RGARRRFEERGQVNGIRFIDD-YAHHPSEIMATLEAARL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF---HVLAL 414
              +     R +AV          +Q+      +  +  +    + ++ +G      ++ 
Sbjct: 348 QVGTQTPWQRIVAVF--QPHRYSRTQTLLKAFGQCFTAADHVIFTDIYSAGEPDPGTISG 405

Query: 415 KDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            D    +   H    Y  T++ +   +   L  GD+V+   + 
Sbjct: 406 ADVATCARQYHASVDYCPTLEAVQTRLAHLLQPGDLVIFLGAG 448


>gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
 gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
          Length = 550

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 153/485 (31%), Gaps = 51/485 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + +++     G      V GIS++SR++ P + + A+ G    G DF+  AV  GA 
Sbjct: 32  LGTIGESVGVVVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVAAGAV 91

Query: 67  LVVVNTDMVASI---GSLSIPVFGVDDVLGA---LNKLAVAARLR--SKATIIAITGSVG 118
            VV + D    +       +PV  VD+   A   L  L   +R    +  ++  +TG+ G
Sbjct: 92  AVVTDDDGARLLALSADTPVPVLVVDEPRSAVGGLAALIYQSRPEGGTSPSLFGVTGTNG 151

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHLGEIR 176
           KTTT   +   L ++ +    IG+     G     +L   P   D       M   G   
Sbjct: 152 KTTTTYFINALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHALLALMRERGLDA 211

Query: 177 ------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                            V+  +A  T +   HL     ++E    KA +F       +  
Sbjct: 212 ASMEVSSHAVSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARLFTP-RHAKSAV 270

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQL-QGKS 280
           +  DD +   L + +         + G       AD+ +         +   ++   G  
Sbjct: 271 ITVDDEWGRRLASAAGIPVTTLATAQGNDPAAPAADWTVTAAAPRGLGTEFRLRHRDGSE 330

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVD--TAIKALSVFHPKEGRGKRYRCALNQGF 338
           + V     G     N  +   +V     +     A    +        G+    +     
Sbjct: 331 LRVHTGLPGSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPGRMQLVSTAPAA 390

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS- 397
                  +  NP +++ A+  +    P    R I V G   +  +  +     +A  L+ 
Sbjct: 391 VV----DFAHNPDALQRALEAVRSTEP--GSRVIVVFGATGQRDQGKRPAMGAIAARLAD 444

Query: 398 -------------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                           I    L+G         L  +I   Y   +        +     
Sbjct: 445 VVIISDDDPHDEDAAAIRADVLAGAREAKESGGLGCTILESYPRDV--AIREAVNMAQPQ 502

Query: 445 DVVVV 449
           D ++V
Sbjct: 503 DTILV 507


>gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
 gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
          Length = 436

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 142/426 (33%), Gaps = 47/426 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T   L  A+    +G      V+  G +I ++   P   F A+ G    G  F   AV
Sbjct: 1   MTTARQLADAVGARLLGDRSGADVDLIGATIRAQDCGPGILFAALPGTRVHGASFGATAV 60

Query: 62  QKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117
           + GA  V+ + +   + +  +  +PV         L  ++ A      +   ++ ITG+ 
Sbjct: 61  EAGASAVLTDPEGIELMAAVAGRLPVLVHPAPRAVLGAVSAAVTGDPSADLDVVGITGTS 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVD 161
           GKTTT  ++  AL         IG+  + +      +R+                     
Sbjct: 121 GKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALPSRLTTPEAPEFQALLARMRAAGAR 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------ 215
               E+    L   R     VR  +     ++  HL     +++   AKA +F+      
Sbjct: 181 AVAAEVSSHALRLGR--VDGVRFAVGAFLNLSQDHLDFHPSMDDYFRAKARLFDVEADPG 238

Query: 216 -GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME 273
             +       +  DD +   L             S     +AD+   +      +     
Sbjct: 239 SAVWPAERAVVVIDDEWGRRLVGM---RPDAVTVSAEPDADADWTAGESTPTDRDTQEFT 295

Query: 274 VQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+  +G +++V    +G     N L+ L IV  L  D      A +        G+    
Sbjct: 296 VRGPRGLTVDVELPLMGRFNVANALVALAIVDALGGD---VAAAAAGLMRVRVPGRLEPV 352

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              Q F  L+D  Y   P ++ A   VL  +    EGR   VLG     G+        +
Sbjct: 353 VRGQDFRVLVD--YAHKPGAVAA---VLRSVRAQTEGRVAVVLGA---GGDRDPGKRPKM 404

Query: 393 AEVLSL 398
               + 
Sbjct: 405 GAAAAE 410


>gi|47565112|ref|ZP_00236155.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
 gi|47557898|gb|EAL16223.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
          Length = 436

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKSNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALRVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREIVAVF--QPHTFSRTEKFLNEFAESLSK--ADQVYLC 368


>gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 252

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                  + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 10  MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G
Sbjct: 127 DIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKG 176


>gi|116333684|ref|YP_795211.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis ATCC
           367]
 gi|122269629|sp|Q03RJ2|MURC_LACBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116099031|gb|ABJ64180.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis ATCC
           367]
          Length = 443

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 137/381 (35%), Gaps = 52/381 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                 L    T I + G+ GKT+T  +L   LS +  T   IG  +          +  
Sbjct: 94  HEFLGHLIEGYTSIGVAGAHGKTSTTGLLAHVLSGVAPTSYLIGDGS---------GKGT 144

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  F ++E       E R      +P  A++T I   H   ++GI+++ SA   + + +
Sbjct: 145 PNARFFVYEA-----DEYRRHFLATKPDYAIMTNIDFDHPDYYTGIDDVYSAFETLAKQV 199

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   IF   DD     LK          +Y +G S   DFQ R  K+ +  S  +V   
Sbjct: 200 KKG--IFAWGDDPELRKLKTDV------PVYYYGTSDRDDFQARNIKRSTTGSTFDVYHD 251

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + +     H  G H   N L  + +      ++D     L+ F   + R    + A   
Sbjct: 252 DEFLGNFEIHLFGEHNVLNSLAVIAVAYFEKVNMDEIKHELADFKGVKRRFTERKLA--- 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ID+ Y  +P+ +KA +    Q  P  E   IAV          + +   D A+ L
Sbjct: 309 -DMTIIDD-YAHHPSEIKATLDAARQKYPDKE--IIAVF--QPHTFSRTIALMDDFAKSL 362

Query: 397 SLYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +L     V+L+                 L   + +   +   + M  L  F         
Sbjct: 363 NL--ADKVFLTNIFSSARETQGAVSSKDLAQKIVKGGEILTVDNMSPLLDF------HDA 414

Query: 446 VVVVKSSNSC-GFYRLINLLL 465
           VVV   +     + R    LL
Sbjct: 415 VVVFMGAGDVQKYERAYEELL 435


>gi|29653494|ref|NP_819186.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 493]
 gi|154707034|ref|YP_001425281.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830659|ref|YP_001596104.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 331]
 gi|44888196|sp|Q83F17|MURC_COXBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029010|sp|A9KER2|MURC_COXBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029011|sp|A9NA45|MURC_COXBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29540756|gb|AAO89700.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 493]
 gi|154356320|gb|ABS77782.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762526|gb|ABX78168.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 331]
          Length = 465

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 154/417 (36%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +     IP+    ++L  L K             IA+ G+ GKTTT  M
Sbjct: 75  SAIGATNPELMAAKQAKIPLLKRGEMLANLMKEY---------QSIAVAGAHGKTTTSGM 125

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L+ A   +++  T+   G  NN        ++ P  V  G + +  +   +  FL   + 
Sbjct: 126 LSHAFVEANLDPTFMVGGVLNN--------SQTPARVGNGHYFIAEADESDASFL--FMH 175

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P IAV+T I   HLS +      +     +  E   + G + L  DD     +      L
Sbjct: 176 PDIAVVTNIDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLDDPILREIA----PL 231

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTL 300
             + + ++G S +A +++  + Q   QS  ++    +   + V     G H A N     
Sbjct: 232 LSRRVITYGFSSDAQYRVVDYCQQGIQSLFQIHSPQRKAPLTVKLSMPGQHNALNATAVT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I  ++  +    +K+L+ F   + R       +      LI E Y  +P  +KA ++  
Sbjct: 292 AIADVVQMNEPALLKSLADFPGVDRRFTIRGEMILPKGNALIIEDYGHHPNEIKATLAAA 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA 417
               P    R + V          ++    +   VL+  +   +  V+ +G   +   D 
Sbjct: 352 RAAWPE--RRMVLVF--QPHRYSRTRDLMTEFVSVLAETDWLVLLEVYSAGEMPIPGADG 407

Query: 418 LPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +          +    +   +  L   +Q      D+++++ + + G   ++  L++
Sbjct: 408 MALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPNDIIILQGAGNIG--SIVTALVQ 462


>gi|307154434|ref|YP_003889818.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
 gi|306984662|gb|ADN16543.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
          Length = 498

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 146/412 (35%), Gaps = 48/412 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N     +      P+F   DVL AL K             IA+ G+ GKTTT  ++
Sbjct: 117 AIAANNAEYQAAKENGYPIFHRSDVLAALIKDYY---------SIAVAGTHGKTTTSSLI 167

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L          +G   +       L +      F + E   S     +       P 
Sbjct: 168 GYMLLKAGLDPTIIVGGEVDAWQGNARLGQG----RFLVAEADESDGSLAKH-----SPR 218

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I   H  ++  +EE+           E   T+    D             L  +
Sbjct: 219 IGIVTNIELDHPDHYQNLEEVIQTFQIFERQCE---TLIACIDCETVR------QRLNPQ 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             YS    K AD+ ++     ++ S +EV  +G+ + ++    +G H   N L  + +  
Sbjct: 270 ITYSLDPEKEADYTVKNVVYHAQGSLVEVWERGQYLGQMNISLLGQHNVSNSLAAVAVGR 329

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QI 363
            L  D +    A++ F   EG  +R+    +    T ID+ Y  +P+ ++  +     + 
Sbjct: 330 KLGLDFEEIAVAVATF---EGAKRRFEHKGHCNGITFIDD-YAHHPSEIRCTLEAARLRS 385

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLAL 414
                 R +A+          + +F  + A   S  +   I+ ++ +G           +
Sbjct: 386 HQDCYSRVVAIF--QPHRYSRTATFMDEFATSFSDADVVIITDIYSAGEVNLGQMSGQQV 443

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            DA+      V+Y  ++  L  F+   L  GD+ +   +      ++I  LL
Sbjct: 444 ADAISCYHKQVYYHPSLKSLGSFLVEILQPGDLALFLGAG--NLNQIIPELL 493


>gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17570]
 gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 481

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 164/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         + + D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|222098159|ref|YP_002532216.1| udp-N-acetylmuramate--l-alanine ligase [Bacillus cereus Q1]
 gi|254765803|sp|B9J189|MURC_BACCQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221242217|gb|ACM14927.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Q1]
          Length = 436

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  ++   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKSNVKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDEELQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q  P    R I V+         ++ F  + AE LS      V+L 
Sbjct: 325 EAARQKHPE---REIVVVFQ-PHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|163942418|ref|YP_001647302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|229013893|ref|ZP_04171021.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229062372|ref|ZP_04199689.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|229135527|ref|ZP_04264312.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|229169419|ref|ZP_04297128.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|229486469|sp|A9VKJ7|MURC_BACWK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163864615|gb|ABY45674.1| UDP-N-acetylmuramate--alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|228614059|gb|EEK71175.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|228647948|gb|EEL03998.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228716941|gb|EEL68627.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|228747562|gb|EEL97437.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 71/410 (17%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG            + +  ++ +  D  +I   +   A  G  + D H+ I+
Sbjct: 21  LHDMKHTVQGSDYEKRFFTQTALEKRGISILPFDKNNIKEGQVIIA--GNAFPDTHEEIV 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +                  L+IPV      LG L          ++ T +A+TG+ G
Sbjct: 79  AAKE------------------LNIPVHRYHHFLGDL---------MNQYTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG    H            +  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHPTSYLIGDGTGHGV---------ENSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I ++ +A  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYYPDYAIMTNIDFDHPDYFADINDVFNAFQEMALQVKKG--IIACGDDEELQKVQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   +  +G  ++ DFQ R  ++ ++ +  +V ++    +     G G H   N L
Sbjct: 216 V------PVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDHSVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV+     L+ F   + R              +I + Y  +P  + A I
Sbjct: 270 AVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPM-----GEQVIIDDYAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               Q   H E   +AV          ++ F  + AE LS      V+L 
Sbjct: 325 EAARQ--KHPEREVVAVF--QPHTFSRTEKFLDEFAESLSK--ADQVYLC 368


>gi|300933353|ref|ZP_07148609.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium resistens
           DSM 45100]
          Length = 481

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 150/429 (34%), Gaps = 52/429 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +++    +IPV    DVL  L     A  L          G+ GKT+T  M
Sbjct: 79  AAIPQDNPELSAARDNNIPVVRRSDVLAQLMVDRRAFLL---------AGTHGKTSTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              AL +     +        IG  L  A        G   +  +   +  FL++  +P 
Sbjct: 130 AVAALQAAGWDPS------FAIGGQLNRAGTNAHHGTGDVFVAEADESDGSFLSY--QPE 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSH 240
           +AV+T + P HL  F   E            +   GT+ +  DD+    L     ++   
Sbjct: 182 VAVVTNVEPDHLDYFGTEEAYREVFERFAGCVVTGGTLVVCLDDAGSRALAQSLSRSIPA 241

Query: 241 ALGIKTIYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGY 290
                 I  +G            A   +   +     + + V+        V      G 
Sbjct: 242 DERDYRILGYGTRAAVEDAPEVEAGAIIEDMRITPAGTEVSVRFFDDEAPRVLRVAIPGS 301

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           HM  N    +   ++L AD+D  ++ ++ F   +G  +R+    +     + D+ Y  +P
Sbjct: 302 HMVLNATAAVLGGALLGADIDKLLEGIAEF---DGVRRRFEYHGSVNDVHVYDD-YAHHP 357

Query: 351 ASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYN 400
             + A +S   + I   G+GR IAV      +   + +F  + A          +L ++ 
Sbjct: 358 TEVTAVLSAARERIEAQGKGRVIAVF--QPHLYSRTMTFADEFAAALSLADEVVLLDIFG 415

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     + D +  ++   Y+   + +   +      GD+V+   + +     L
Sbjct: 416 ARENPVEGVDSRVIGDKV--TVPWEYAPEFNAVPRTVSKLTRPGDMVLTIGAGTVTM--L 471

Query: 461 INLLLEEFP 469
            + +L E  
Sbjct: 472 ADEILRELE 480


>gi|93006855|ref|YP_581292.1| UDP-N-acetylmuramate--alanine ligase [Psychrobacter cryohalolentis
           K5]
 gi|109892726|sp|Q1Q945|MURC_PSYCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|92394533|gb|ABE75808.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter
           cryohalolentis K5]
          Length = 479

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 131/390 (33%), Gaps = 39/390 (10%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV    D+LG L +             IAI G+ GKTTT  +LT  ++        
Sbjct: 102 EARLPVVRRADMLGELMRYR---------HGIAIAGAHGKTTTTSLLTTMMAE------- 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ +    +   L     +   G     ++   E       + P  A++T I   H+  
Sbjct: 146 -GNLDPTYVIGGKLNASGKNAALGSSRFLIAEADESDASFLSLHPMAAIVTNIDQDHMET 204

Query: 200 FS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           +    +++ +A  +  + +   G   +  DD     +         + + +FG     D 
Sbjct: 205 YGNSFDKLKAAYIQFLQNMPFYGLAVVCGDDPELYAMIDDI----GRPVLTFGLEPFNDV 260

Query: 259 QLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           Q         ++   V  +  + + +  +  G H   N L  + + +    D     +AL
Sbjct: 261 QAVDLVTEGTKTHFTVLRRDHEPLRLTLNIPGVHNVYNALAAITMATDEGVDDAAITRAL 320

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHG 367
             F     R +++          L+ + Y  +P  + A I    Q            PH 
Sbjct: 321 QKFEGVGRRFEQHASVEIDDGNVLLIDDYGHHPKEVDATIKAARQSFPERRLVMMFQPHR 380

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-Y 426
             R      D  E+             +L +Y+     ++G    AL  ++     V   
Sbjct: 381 YSRTRDCFDDFVEVLSSVDEL-----LLLDVYSAGESPIAGADTKALARSIRLRGAVEPT 435

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               D +   +Q  L  GD+++ + + + G
Sbjct: 436 IVDKDNIAPVMQRLLKAGDMLITQGAGNVG 465


>gi|90961461|ref|YP_535377.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           UCC118]
 gi|227890551|ref|ZP_04008356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ATCC 11741]
 gi|301299769|ref|ZP_07206012.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|122449234|sp|Q1WUP1|MURC_LACS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90820655|gb|ABD99294.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus salivarius
           UCC118]
 gi|227867489|gb|EEJ74910.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ATCC 11741]
 gi|300214313|gb|ADJ78729.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus salivarius CECT 5713]
 gi|300852624|gb|EFK80265.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 443

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/361 (21%), Positives = 127/361 (35%), Gaps = 51/361 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T I + G+ GKT+T  +L   LS +  T   +G  +          +   +  F +FE 
Sbjct: 104 TTSIGVAGAHGKTSTSGLLAHVLSGVSPTSYLVGDGSG---------KGTPNARFFVFEA 154

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E R       P  A++T I   H   F+ I+++  A   +    +K   IF+  
Sbjct: 155 -----DEYRRHFVAYHPDYAIMTNIDFDHPDYFTDIDDVRDAFETLAMQTKKG--IFVWG 207

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D     L AK        ++ +G   + DF+    K+ ++ S  +V    + +      
Sbjct: 208 EDENLRKLNAKV------PVHYYGTKSDDDFRAENIKRTTKGSNFDVYFHDEFIGNYDIP 261

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +  +   D     K L  F   + R    R A       +I + Y
Sbjct: 262 MFGEHNVLNSLAVIAVSYMEKVDQQEIAKELLTFKGVKRRFTEKRVADM-----VIIDDY 316

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +PA +KA I    Q  P  + + IAV          + +   + AE LSL     V+L
Sbjct: 317 AHHPAEIKATIDAARQQYP--DKKIIAVF--QPHTFSRTIALMDEFAESLSL--ADKVYL 370

Query: 407 SG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +                 L   + +   V   + M  L  F        DVV+   +   
Sbjct: 371 TDIFSSIREHDGKVSSEDLGKKISKGGEVLKLDNMSPLLDF------HDDVVIFMGAGDI 424

Query: 456 G 456
            
Sbjct: 425 Q 425


>gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
 gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
          Length = 445

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    IIAITGS GKTTT  ++    +         G+    +     LAR     D  +
Sbjct: 105 RQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAGNIGTPVLEAW-LARKGKPADVWV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T L+    A    I+  HL  +  + + A AK  IF G        
Sbjct: 164 LELSSFQL----ETTPLLDADAAACLNISEDHLDRYDDLLDYARAKDMIFNG---KAVQV 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        +T++ F   +  D+  +          + +  Q       
Sbjct: 217 LNADDAFCRAMK-----RDGRTVHYFSLQQPQDYHWQAGAGSLHHQEVLLMPQ-----TD 266

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L  L +   +    D  +  +  F   +G   R      +   T ID+
Sbjct: 267 IPLQGSHNMANVLAALALCESIGLPRDRLLAHVKTF---KGLPHRVEKVGEKNGITFIDD 323

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L +       +   + G M +  + +          +       V
Sbjct: 324 SKGTNVGATVAAIAGLPE-------KIWLIAGGMGKGQDFTP------LRDVLREKAGAV 370

Query: 405 WLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G        D     + + + ET+        +    GD+V++
Sbjct: 371 FLIGVDAPKIAADLDGCGVDLVFCETLPEAVQAAFARAQSGDIVLL 416


>gi|153207176|ref|ZP_01945955.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918361|ref|ZP_02218447.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212219386|ref|YP_002306173.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuK_Q154]
 gi|226706319|sp|B6J5K2|MURC_COXB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120576837|gb|EAX33461.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917867|gb|EDR36471.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212013648|gb|ACJ21028.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 465

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 154/417 (36%), Gaps = 45/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +     IP+    ++L  L K             IA+ G+ GKTTT  M
Sbjct: 75  SAIGATNPELMAAKQAKIPLLKRGEMLANLMKEY---------QSIAVAGAHGKTTTSGM 125

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L+ A   +++  T+   G  NN        ++ P  V  G + +  +   +  FL   + 
Sbjct: 126 LSHAFVEANLDPTFMVGGVLNN--------SQTPARVGNGHYFIAEADESDASFL--FMH 175

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P IAV+T I   HLS +      +     +  E   + G + L  DD     +      L
Sbjct: 176 PDIAVVTNIDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLDDPILREIA----PL 231

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTL 300
             + + ++G S +A +++  + Q   QS  ++    +   + V     G H A N     
Sbjct: 232 LSRRVITYGFSSDAQYRVVDYCQQGIQSLFQIHSPQRKAPLTVKLSMPGQHNALNATAVT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I  ++  +    +K+L+ F   + R       +      LI E Y  +P  +KA ++  
Sbjct: 292 AIADVVRMNEPALLKSLADFPGVDRRFTIRGEMILPKGNALIIEDYGHHPNEIKATLAAA 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA 417
               P    R + V          ++    +   VL+  +   +  V+ +G   +   D 
Sbjct: 352 RAAWPE--RRMVLVF--QPHRYSRTRDLMTEFVSVLAETDWLVLLEVYSAGEMPIPGADG 407

Query: 418 LPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +          +    +   +  L   +Q      D+++++ + + G   ++  L++
Sbjct: 408 MALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPNDIIILQGAGNIG--SIVTALVQ 462


>gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
 gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
          Length = 505

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 143/464 (30%), Gaps = 57/464 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +   + DSR + P   F   KG  +   +++L A+  GA   V   D       + +
Sbjct: 33  DQRIEFATDDSRQVRPGTLFVC-KGRAFK-REYLLSAIADGAVAYVSEVDY-----DVDL 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139
           P   V D+   L     A       K  + A TG+ GK+T    L   L++  K   C  
Sbjct: 86  PAVIVSDIRRTLAVVADAFYGHPSGKVKVCAFTGTKGKSTCSFYLRGILANEAKLTGCHR 145

Query: 140 -------------------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                              + +  + +              + + E     L      T 
Sbjct: 146 PALNTGIEFDDGIEAGPSKLTTPESFLLQSRIAHAAEAGAPWLVMEASSQGLKY--ERTG 203

Query: 181 LVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKA 237
            +   +   T I   H+S      +E+  ++K +IF     +    +N D D    +L+A
Sbjct: 204 KIAFEVGAFTNIGEDHISPIEHPTLEDYFASKLKIFSQ---SRFAVVNLDMDKVDRVLEA 260

Query: 238 KSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            S     +   +F    + AD      +         V+    + ++V          N 
Sbjct: 261 ASR---CERTVTFSLTDERADVFALAIRNGDCGVVATVRTPRFTRDIVIPTPVKFNVSNA 317

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +    +L    +  +     F      G+        G    I + +  N  S++  
Sbjct: 318 LAAIACAEVLGISEEGIVHG---FEGVFVPGRMELYPSVSGKILGIVD-FAHNGMSLETL 373

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +  L +  P  E     V G     G +   +  I   +      I+        V  + 
Sbjct: 374 LRDLRENYPERE--LAVVFGATGGKGVDRRTTMGIAAGKYADRIVITEDDPGPEDVEDIC 431

Query: 416 DALPRSIHVH-------YSETMDGLFLFIQSSLVDGDVVVV-KS 451
             + R++           ++ +  +   ++ ++    V+V  K 
Sbjct: 432 AEIARNVQAQGNDNWQIVTDRVAAIEAAVRETVRPAVVIVTGKG 475


>gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
 gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 432

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 148/417 (35%), Gaps = 72/417 (17%)

Query: 1   MNPLWT-FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY- 51
           M+PL    HD    +QG  I         + +  +  +  D  +I P     A  G  + 
Sbjct: 14  MSPLAQILHDTGYTVQGSDIEKHIFTQKALEERNIKILPFDPDNIQPGMTVIA--GNAFP 71

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D H  I  A+ +G                  IPV      LG                 +
Sbjct: 72  DTHPEIERALSEG------------------IPVIRYHKFLGEYMDSFTN---------V 104

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GKT+T  +L   + S K T   IG  +              + ++ +FE     
Sbjct: 105 AITGAHGKTSTTGLLAHVMQSAKPTSYLIGDGSGMGK---------ENSEYFVFEA---- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E R       P  A++T I   H   FS I+++  A   +   ++K   I    DD  
Sbjct: 152 -CEYRRHFLSYHPDYAIMTNIDFDHPDYFSDIDDVFDAFQNMALQVKK--AIIACGDDEH 208

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGY 290
              ++AK        +  +G ++  DFQ R   + +E +  +V ++    +       G 
Sbjct: 209 LPKIQAKV------PVVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYGN 262

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + +    + DV+    AL+ F   + R          G   LID+ Y  +P
Sbjct: 263 HNVLNSLAVIALCHYESIDVELIKGALTTFGGVKRRFNEKVV----GAQVLIDD-YAHHP 317

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             ++  I    Q  P  E   +AV          +Q F  + A+ L      +V+L 
Sbjct: 318 TEIEVTIEAARQKYPDRE--IVAVF--QPHTFTRTQQFLSEFADSLKK--ADYVYLC 368


>gi|170781769|ref|YP_001710101.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189028984|sp|B0RIJ4|MURC_CLAMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169156337|emb|CAQ01485.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 476

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/427 (19%), Positives = 147/427 (34%), Gaps = 39/427 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR     +A   +    + GHD    A    A  +VV   +          V   +  L
Sbjct: 45  DSRDSDAVQALRELGAEIHVGHD---AAHVGDADALVVTGALWQDNPEY---VLAKERGL 98

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L++    A L S   ++A+ G+ GKTT+  M+  AL    +        N  +   + 
Sbjct: 99  PILHRSQALAWLISGQRLVAVAGAHGKTTSTGMIVTALLEAGRD---PSFVNGGVIGGIG 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           ++  P   +  + E   S    + + T      +A+IT +   HL ++   E    A   
Sbjct: 156 VSSAPGSEELFVVEADESDGSFLLYDTA-----VALITNVDADHLDHYGSHEAFDDAFVR 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
                 +   + ++ DD     + A+        + +FG+   AD ++            
Sbjct: 211 FASAASE--LVVISSDDPGARRVTARIEG----RVVTFGEDPAADIRITDI-VTDGPVAF 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +   G S        G H A N      ++  L  D D AI  L+ F    G  +R+  
Sbjct: 264 TLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGLGVDPDDAIAGLAGFS---GTSRRFEL 320

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  ++ D+ Y  +P  ++AA+     +   GEGR IAV      +   +Q    D 
Sbjct: 321 HAEVRGVSVYDD-YAHHPTEVRAALEAARTV--VGEGRIIAV--HQPHLYSRTQMMAGDF 375

Query: 393 AE----------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           A           VL ++      + G     + +    + HV Y                
Sbjct: 376 ARVYEELADHTIVLDVFGAREDPIPGVTGALVSERFADASHVDYLPDWQQAADRAAEIAR 435

Query: 443 DGDVVVV 449
           DGD +V 
Sbjct: 436 DGDFIVT 442


>gi|312880217|ref|ZP_07740017.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
 gi|310783508|gb|EFQ23906.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
          Length = 485

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 145/419 (34%), Gaps = 42/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +     IPV    +VL  L               I + G+ GKTTT  M
Sbjct: 81  SAISEEHPEIRAARERGIPVARRAEVLSDLFNRRRG---------IGVAGTHGKTTTSSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +   +           +  + +   L  +  +   G  E  ++ L E      L  P 
Sbjct: 132 IALIAENAG--------ISPTVALGGELCDIGCNAKLGSGETMVAELDESDGSFELFSPE 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
           IAV+T I   H+ ++   E +  A      G +  G++ L  +D+    L  + H  G+ 
Sbjct: 184 IAVVTNIDWDHVDHYPTYESVGDAFHRFALGKKPAGSLVLCAEDAGTRRLAERLHEDGLA 243

Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
            +T+Y++G   +  +                V  +G  +  +     G H   N L    
Sbjct: 244 SETLYTYGWGTSWTWGATDVTPLPGGGIRCLVHFRGTPLGTLSLRVSGEHNVLNALAACA 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             SI+    + + +ALS F   + R +R   A        + + Y  +P  + A +  L 
Sbjct: 304 ACSIVGIPFEVSCRALSTFKGAKRRLQRVGAAEG----VEVYDDYGHHPREIHATLRALR 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVL 412
              PH   RR+ VL         +  F  + A VL+         +Y      + G    
Sbjct: 360 GAFPH---RRLLVLFQPHRFTRTAAMF-REFATVLTGADRVLLLPVYGADETPIPGVGSH 415

Query: 413 ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
            + +A P+     +    +       +     D DVV+   + +      R+++ L  E
Sbjct: 416 LIAEAFPKEGPTRLDLCGSFSEAVEVVLRERRDQDVVLTVGAGNVCLLGERILDSLKRE 474


>gi|299133064|ref|ZP_07026259.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
 gi|298593201|gb|EFI53401.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
          Length = 1310

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 148/423 (34%), Gaps = 47/423 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           + GH    H    GAG+VV +  +  S   L       IP+      LG L + + A   
Sbjct: 53  FHGH-HADHV--NGAGMVVYSDAIPFSNPELAEARLRQIPIAKRAQCLGLLLEHSRA--- 106

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 +A++GS GK++T  M+   L +  +         +H+    +     +    G 
Sbjct: 107 ------VAVSGSHGKSSTTTMIANILRASGQDV-------SHVVGAPSECLDNIQGRCGA 153

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            ++ ++   E       + P IA+I  I   H+ ++  +E++  A  +    +   G + 
Sbjct: 154 SDIFVAEACEAFQNLAPLSPDIALILNIDDDHIEHYGSVEKLHGAFRDFAGRIRNGGALI 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N +D+    + A + A     + +FG +   D            S   V   G  +  +
Sbjct: 214 VNGEDARARDIAASAIA----PVTTFGFAAGFDVHAAHIAMDGGGSTFSVIAYGAELGTL 269

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G HM  N L  +     L        +    F    G  +R++         LID
Sbjct: 270 RLKVPGRHMIGNALACVAACLALDVSFAGIQRGFEQFT---GVSRRWQMHGEVHGVRLID 326

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAE------ 394
           + Y  +P  ++A +     I+ H     IA      ++   ++     ++++ +      
Sbjct: 327 D-YAHHPTELRACLETARLIAAHSGSLCIAF---QPQLYSRTRRLLGEYVEVLKGFDRIG 382

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           ++ +         G  V  L D L  +   V        L   I S    GD ++   + 
Sbjct: 383 LVEIDGAGEKNTFGVSVHHLADTLREAGKTVCAFPDAGELLQNISSLASTGDTLIFAGAG 442

Query: 454 SCG 456
           +  
Sbjct: 443 NIR 445


>gi|50083547|ref|YP_045057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           sp. ADP1]
 gi|49529523|emb|CAG67235.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ADP1]
          Length = 455

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 156/465 (33%), Gaps = 80/465 (17%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-----------AGLVVVNTDMVASIG 79
             DSR   P             GHD I   VQ             A  ++++  +   + 
Sbjct: 41  VTDSRETPP-------------GHDQIPQDVQTSFGQLDTELLLQAEEIILSPGLAPQLP 87

Query: 80  SLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            +       IPV G   VL          R  ++  I+AITGS  K+T   +        
Sbjct: 88  EIQQAIAQGIPVIGDIQVL----------RRATQVPIVAITGSNAKSTVTTLFGQMAKDA 137

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            K  A  G+          L  +  + +  + EL    L      T  +   +AVI  ++
Sbjct: 138 GKRVAVGGNLGRP-----GLDLLKDEPELLVLELSSFQL----ETTSHLNAEVAVILNMS 188

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +     AK  IF+G++K   +  N DDS    L   S  +      SFG +
Sbjct: 189 EDHLDRHGDMLGYHQAKHRIFQGVKK---VVYNRDDSLTRPLVPDSTPMQ-----SFGLN 240

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDT 312
              D +     +  + +    + + + ++     I G H   N L  L +   +   V++
Sbjct: 241 A-PDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQGTHNIANALACLALGEAIGLPVES 299

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++ L  F   E R +  +           ++S   N  +  AAI  L       +G+ I
Sbjct: 300 MLETLKQFKGLEHRCEYVKTV---NDVRYYNDSKGTNVGATLAAIDGLGAAIEPKQGKVI 356

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +LG   +  + S      + + +         L G     ++ AL  +  + ++ T+  
Sbjct: 357 VILGGQGKGQDFSL-LRQSVEKYVKAA-----ILIGEDAQQIEQALTETTQLVHASTLKD 410

Query: 433 LFLFIQSSLVDGDVVV----------VKS--SNSCGFYRLINLLL 465
                Q      DVV+           K        F   ++ L+
Sbjct: 411 AVTQAQQYAQPEDVVLLSPACASFDMFKGYPDRGHQFVACVDALV 455


>gi|114704920|ref|ZP_01437828.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
 gi|114539705|gb|EAU42825.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
          Length = 471

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 144/409 (35%), Gaps = 51/409 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      +A+     +P+    ++L  L +   A         IAI G+ GKTTT  M+
Sbjct: 75  AIKRTNPELAAARERLLPIVRRAEMLAELMRFRQA---------IAIGGTHGKTTTTSMV 125

Query: 127 TIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L +     T    G  N +     T ARM    D+ + E   S    ++     +  
Sbjct: 126 ATLLDAGGLDPTVVNGGIINAY----GTNARMGEG-DWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   E +  A     E +   G   +  D    + + ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGTFERVKEAFRSFVENVPFYGFAVMCIDHPVVQSVVSEIE---D 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNML 297
           + + ++G++  AD +         +S   V ++ +         E+     G H   N  
Sbjct: 233 RRVITYGENPQADVRFENVSFEPGKSHFSVTVRDRVKGTETNLGELTLPMPGKHNVSNAT 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L    +   K L+ F   +   +R+          + D+ Y  +P  +++  
Sbjct: 293 AAIAVADRLGLSPEQIQKGLATFEGVK---RRFTLTGVVDGIAIYDD-YGHHPVEIRS-- 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLAL 414
            VL+       GR IAV+          Q+   D A   +  +   ++ V+ +G   +  
Sbjct: 347 -VLAAARASANGRVIAVV--QPHRYTRLQALFPDFASCFNDADTVILAPVYAAGEEPIEF 403

Query: 415 KDA--------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++        L         +  D L   I       D+V++  + S 
Sbjct: 404 ANSEMLVERIKLGGHRDARLIDGPDELPTLINQIAEAEDIVILLGAGSI 452


>gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 481

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 164/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             +   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+  H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFRFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|295688570|ref|YP_003592263.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430473|gb|ADG09645.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 472

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 162/432 (37%), Gaps = 56/432 (12%)

Query: 48  GPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G   + GHD    A  +GA  +V +T + A    +       +P+    ++L  L +L  
Sbjct: 57  GARIFIGHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLVRRAEMLAELMRLQF 113

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     IA+ G+ GKTTT  M+   L +           N  I           + 
Sbjct: 114 ---------SIAVGGTHGKTTTTSMVATLLDAGGMD---PTVVNGGIINAYGTNAKVGEG 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E   S    +R     ++  +A++T I   HL ++   E +     +  + +   
Sbjct: 162 DWIVVEADESDGSFLR-----LKSTVAIVTNIDAEHLDHWGDFEAVKKGFQDFIQNIPFY 216

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +  D    + L ++      + + ++G +  A+ ++   +   + +  ++ +  + 
Sbjct: 217 GFAAVCTDHPEVQALTSRIEN---RRLVTYGTNPQAEVRVSNIEMGPDGAKFDIVVSPRD 273

Query: 281 MEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            EVV          G+H   N    + +   L  D ++  K L+ F   +   +R+    
Sbjct: 274 GEVVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAESIAKGLAGFGGVK---RRFTTTG 330

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
                 ++D+ Y  +P  + A +     ++   +G+ IAV        L D+  M E S 
Sbjct: 331 VANGIRVVDD-YGHHPVEIAAVLKAARAVT---QGKVIAVVQPHRYTRLRDL--MTEFSS 384

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVD 443
            F+  D   V  +Y      + G +  AL + L +  H      E+   L   I +    
Sbjct: 385 CFNDADTVIVADVYTAGEQPIEGVNRDALVEGLKKFGHRRALPLESPTALPRLIAAEATS 444

Query: 444 GDVVVVKSSNSC 455
           GD+VV+  +   
Sbjct: 445 GDLVVLLGAGDI 456


>gi|320007795|gb|ADW02645.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces flavogriseus ATCC
           33331]
          Length = 464

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 156/441 (35%), Gaps = 47/441 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVF 86
           D+R  A  +A  A+    + GH      +   A  VVV      +   +     L IPV 
Sbjct: 40  DARESATADALRALGATVHIGH--AAGHLADDATSVVVSSAIRADNPELVRAAELDIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYN 144
              D L +L               IA+ G+ GKTTT  ML +ALS  ++  +YA      
Sbjct: 98  HRSDALASLMD---------GLRSIAVAGTHGKTTTTSMLAVALSELALDPSYA----IG 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +  P T A    D D  + E   S     ++      P +A++  +   H +N++ ++
Sbjct: 145 GDLEGPGTNAT-HGDGDIFVAEADESDRSFQKYA-----PEVAIVLNVELDHHANYASMD 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EI  +       +   GT+ +  D      L  +        + ++G+S+ AD ++ K  
Sbjct: 199 EIYESFETFVGKVVPGGTLVVAADQPGAVELTRRVRERSSVRVVTYGESEGADVRVHKVT 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S + V L GK +       G H A N +  L     L         A+  +   +
Sbjct: 259 PRGLTSEVTVVLNGKFLTFTVSVPGRHYAHNAVAALAAGVALGVPAHNLASAIGTYTGVK 318

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              +R +         +I +SY  +P  M A +  +   +     R + V      +   
Sbjct: 319 ---RRLQLKGEAAGVQVI-DSYAHHPTEMAADLEAMRGAASE--SRLLVVF--QPHLFSR 370

Query: 385 SQSFHIDLAEVLSLYNISHV---------WLSGFHVLALKDALP-RSIHVHYSETMDGLF 434
           +Q    ++ + L+L + S V          L G     + DA       V        + 
Sbjct: 371 TQELGTEMGQALALADASLVLDIYPAREDPLPGVTSALIIDAAKAAGADVTAVHDKAAVP 430

Query: 435 LFIQSSLVDGDVVVVKSSNSC 455
             +      GD+V+   +   
Sbjct: 431 AAVAGMAKPGDLVLTMGAGDV 451


>gi|325846778|ref|ZP_08169693.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481536|gb|EGC84577.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 150/416 (36%), Gaps = 47/416 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N + + +  SL +PV      LG L K             IA++GS GK+TT  M+
Sbjct: 79  AISDNNEELIAARSLGVPVVTRGVFLGGLMKNY--------KNSIAVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L +         + N  I +   L  +  +V  G  E+ ++   E +       P I
Sbjct: 131 SKILMN--------STKNPTILLGGDLDEIEGNVHVGDEEILVTEACEYKGNIRYYYPSI 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   HL  +  + +I        +  ++     LN ++   +L+           
Sbjct: 183 GIILNIDEDHLDYYKDLNDIIETFKSYLKNQDENSKTILNLNEENNKLVIDSVQG----E 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++G ++ +AD+         +     ++ ++  S E      +G H   N    +   
Sbjct: 239 LITYGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNACAAIIST 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D++T     +     +G  +R +   N     +I + Y  +P+ ++  +S L++ 
Sbjct: 299 LESGVDIETIK---NSIQSYKGLERRMQLLGNIDGCKIILD-YGHHPSEIQVNLSALAE- 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVL 412
             H +GR I V          ++    +        +   V +                 
Sbjct: 354 --HTKGRLICVW--QPHTYTRTKRLFNEFVNCFD--DADEVIITDIFAAREPFDPSISSK 407

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLLLE 466
            + DAL  +     Y  T D +  ++ S + + D V+V  S  S    ++I  + E
Sbjct: 408 DIVDALVEKGKSAKYLPTFDQVKEYVLSDIKENDQVIVTGSGDSDHLAKMIAGISE 463


>gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           EA 2018]
          Length = 458

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 149/414 (35%), Gaps = 44/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    + LG+L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIPEDNPELIYARKNNISLMTRAEFLGSLMKGHKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++          A     +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 VSHI--------ALTEDVDPTILVGGNLDIINGNVLAGKSDYFITEACEYKASFLEFYPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  I++I +  A+    + K G +  N DD     + + +      
Sbjct: 181 IGVILNIDADHLDYYKNIDDIENTFAKFVNLIPKEGYLIANADDKRVARVASNATC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
            + SFG   N D + +         S  +V    +    +  +  G H   N L  +   
Sbjct: 237 NVVSFGID-NGDIRAKNISFNESGFSSFDVYKSSELLFNIKLNVPGKHNILNALSAIASA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L     + I  L  F   +G  +R+     +   T+ID+ Y  +P  +KA +      
Sbjct: 296 LTLKISHKSIIDGLKSF---KGTHRRFEIKGVKNGITVIDD-YAHHPTEIKATLDAAKNY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R +++  D       S S   +L  +  +Y            L L
Sbjct: 352 PHNKIYCVFQPHTYSRTLSLFDDF----SNSFSGVDELV-LADIYAAREKDTGVVSSLKL 406

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +A+ +  +      + + +  + +S L DGD+++   +     +++  + L +
Sbjct: 407 SEAINKNGVKSSNLHSFEDIVNYFKSKLNDGDILLTVGAGDV--FKIGEMFLSK 458


>gi|295394740|ref|ZP_06804955.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972336|gb|EFG48196.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 452

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 146/426 (34%), Gaps = 47/426 (11%)

Query: 42  AFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            F    G H +G D   +  A++            +     L IPV    D L  L +  
Sbjct: 49  VFIGHDGSHVEGADTVVVSSAIR-------HTNPEIVRAEELGIPVIHRSDALATLME-- 99

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      IAI G+ GKTTT  M T+AL +  K  +        IG  L+       
Sbjct: 100 -------GKRTIAIAGTHGKTTTTSMTTVALQAAGKDPS------FAIGGQLSKTGTNAH 146

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              G   +  +   +  FL +  RP + VIT     HL ++   E +  A  E    +  
Sbjct: 147 AGSGDVFIAEADESDGSFLKY--RPEVGVITNAEADHLDHYGSWERVREAFVEFGSHVGN 204

Query: 220 -TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             GT+ +  DD     +  ++   G   I  +G+S  AD ++       +   + +  +G
Sbjct: 205 MGGTLIVCADDKGAASIGREAREQGTNVIL-YGESDIADARV-NASTHGQGVSVSIAFEG 262

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G + A N          +  D    I+ L  F    G  +R+     +  
Sbjct: 263 QEYAFDIALPGTYNALNATAAFLSARAVGGDPQGIIQGLESFT---GTRRRFELRGIEKG 319

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             + D+ Y  +P  + A ++   ++       ++ V+     +   +++F+ + A  LSL
Sbjct: 320 VRVYDD-YAHHPTEVTALLTAAKKV--VDPSNKVHVIFQ-PHLFTRTKNFYREFARALSL 375

Query: 399 YN---------ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +              + G     +   +  +  V Y          +   +  GD+V+ 
Sbjct: 376 ADDVIVLDVFPAREDPIPGVTGELIAREV--TSDVTYVPAFSDAVPTVVERVKPGDIVLT 433

Query: 450 KSSNSC 455
             +   
Sbjct: 434 VGAGDV 439


>gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 481

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 164/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             +   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+  H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFRFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|297583565|ref|YP_003699345.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
 gi|297142022|gb|ADH98779.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
          Length = 438

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 127/354 (35%), Gaps = 40/354 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IA+TGS GKT+T  +L   L + K T   IG             +   + ++ +FE  
Sbjct: 102 TSIAVTGSHGKTSTTGLLAHVLENAKPTSYLIGDG---------TGKGMENSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P+ A++T I   H   F   E++  A  E+   + K   I    D
Sbjct: 152 ----CEYRRHFLNYYPNYAIMTNIDFDHPDYFKDAEDVFQAFQEMANQVNK--AIIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + L A         I  +G S++ DF  +      E +  +V ++G         G
Sbjct: 206 DESLQRLTASV------PIVYYGFSEDHDFSAQNVDYDPEGTHFDVMIRGAFYGRFTIPG 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + I       ++T    ++ F   +    R           LID+ Y 
Sbjct: 260 YGNHHILNALAVIAICHYEEVTLETIQTHIATFGGVK----RRFSETEMNGQILIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  + A I        + + + +AV          +++F  D A  L   N  HV+L 
Sbjct: 315 HHPTEIAATIESAR--KKYPDRQVVAVF--QPHTFSRTEAFLDDFARSLE--NADHVYLC 368

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLF-----IQSSLVDGDVVVVKSSNSCG 456
                + ++        H  E +DG  L      +  +  +  V++   +    
Sbjct: 369 -DIFSSAREFKSDLTINHLQERIDGAKLITEDGTLVLNSHEHAVLLFMGAGDVQ 421


>gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
 gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
          Length = 514

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 45/419 (10%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A       +  +  +N I+ DSR++     F   KG ++    ++  AV +GA   +   
Sbjct: 20  ATTITQENVADEVIINRITFDSRAVTANTLFVC-KGLNFKA-SYLKDAVDRGAVAYLSEQ 77

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIAL 130
           D  A      IP   V+D+  A+ +LA          +    ITG+ GKTTT   +   L
Sbjct: 78  DYAAD-----IPGIIVEDIRLAMAQLANFFYQSPWQDVAISGITGTKGKTTTAGFVNQIL 132

Query: 131 -----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE------IRFLT 179
                   +     + S  N+ G+  T + +       ++E+  +          +   +
Sbjct: 133 TLDSQEKGQPLPGFVSSTFNYDGLEKTPSTLTTPEAMDLYEMLATMRDNGVKRATMEVSS 192

Query: 180 HLVRPH--------IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD- 228
             ++ H        +     I+P H+S        +   +K  IF+         +N D 
Sbjct: 193 QALKYHRADDVKMEVVAFLNISPDHISPVEHPTFADYFQSKLRIFDH---GKVAVINEDT 249

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D + E+LKA   A  I+ I +   K+  AD+   +      +    V+ QG+ + +  + 
Sbjct: 250 DHYEEILKAAEDAENIQRIVTVSRKNPAADYFADELAFSETKQTFVVKNQGEEIPMALNV 309

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G+    N L+   I      +  T  KAL      +GR + YR   NQ  F +    + 
Sbjct: 310 LGHFNINNALVAAAIARENDVEWATIQKALGDAK-TDGRMEIYRSTDNQLTFVV---DFA 365

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            N  S +   S + +++P  + R   V G     G  +++   D+  V  L N + ++L
Sbjct: 366 HNKISFEELFSSVKEMAPDNDIR--IVFGS---AGGKAENRRADMGRVAGL-NTNEIYL 418


>gi|251772200|gb|EES52770.1| UDP-N-acetylmuramate--alanine ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 471

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 149/431 (34%), Gaps = 50/431 (11%)

Query: 44  FAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALN 96
            A KG   + GH      +    G VVV++ +  S           IP+    ++L +L 
Sbjct: 47  LAEKGATIFSGHS--ADHLSGDVGKVVVSSAIRHSNPEWIAAVTRGIPIVHRGEMLASLV 104

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLA 154
             +           IA+TGS GKTTT  M+   L  + +  T    G  ++  G  L   
Sbjct: 105 NPSYG---------IAVTGSHGKTTTTSMVASLLVSAGLDPTCVVGGRVSSFPGCALV-- 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                  + + E   S    ++     + P + ++T I   H+  +   + +  A +   
Sbjct: 154 ---GRSRYFVTEADESDGSFMK-----LAPRLRIVTNIDREHMDFYGTFDNLIQAFSTYL 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  ++ G   L  DD     L  +   +      ++G S  A  +          S  +V
Sbjct: 206 DTGDEGGIGILCIDDPGVAALIERISTIP----LTYGLSSAARVRAENIVHEGVGSSFDV 261

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           ++ G        H  G H   N L  +     L    D   +ALS F      G+R+   
Sbjct: 262 RVDGACWGRFSLHVPGMHNILNALAAICAGICLEISPDLMRQALSRFESV---GRRFTLL 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHID 391
             +    ++D+ Y  +P  ++A ++      P    R +AV        + +L  +F   
Sbjct: 319 GERDGVIVVDD-YGHHPTEIRATLAAARLAYP--GRRIVAVFQPHRFTRVRDLQNAFIES 375

Query: 392 LAE-----VLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG 444
            ++     V  +Y+     + G     L   +       V Y    D     +   L  G
Sbjct: 376 FSDADKILVTEIYSAGEDPIPGIGSEGLYRKMRDRWDDRVDYEPRRDRWVERLNGMLKPG 435

Query: 445 DVVVVKSSNSC 455
           D+++   +   
Sbjct: 436 DLLLTLGAGDI 446


>gi|302876612|ref|YP_003845245.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
 gi|307687286|ref|ZP_07629732.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulovorans
           743B]
 gi|302579469|gb|ADL53481.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
          Length = 461

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 142/413 (34%), Gaps = 44/413 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + S  + ++P+F   + LG + K             IA++G+ GKTTT  M
Sbjct: 79  AAIAKDNPELVSANNRNLPMFTRAEFLGEIMKDYKHN--------IAVSGTHGKTTTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L          G  +  I V  +L  +   V  G  +  ++   E +       P 
Sbjct: 131 VSHIL--------LKGEKDPTILVGGSLDIINGYVRTGKSDYFLTEACEYKGSFLSFYPT 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   HL  +  I+EI  A  +    + + G + +N +D     +   S+     
Sbjct: 183 IGIILNIDADHLDYYKDIDEIEEAFQKFAYLIPRDGYLIVNNEDERAVNVAKNSNC---- 238

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
              +FG   N D   +     S      ++  +G     V     G H   N L  +   
Sbjct: 239 NTITFGID-NGDIIAKNVTFNSLGHGSFDMFYKGCEYFHVTLKVPGRHNVLNSLSAMAAA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +     +  F    G  +R+         T+ID+ Y  +P  +KA +     +
Sbjct: 298 IASGIEPNHIKAGIESFG---GTHRRFEFKGTVDDITVIDD-YAHHPTEIKATLEACKNV 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
           S +   R I V          + S   D +E         +  +Y              L
Sbjct: 354 SHN---RLICVF--QPHTYTRTYSLFKDFSECFGGITKLVLADIYAAREKDTGIVSSQRL 408

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            DA+    +      + + +  F+++    GD+++   +      ++    L+
Sbjct: 409 GDAIRLNGVDCINLHSFEEITNFLKTYAKAGDMIITVGAGDIN--KVGEDFLK 459


>gi|86137681|ref|ZP_01056258.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
 gi|85826016|gb|EAQ46214.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
          Length = 470

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 142/417 (34%), Gaps = 39/417 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       +PV    ++L  L +L            IAI G+ GKTTT  M
Sbjct: 78  SAIKPGNPELDEARRRGLPVVRRAEMLAELMRLKSN---------IAIGGTHGKTTTTTM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   +          G ++  +     +     +   G  E  +    E     + +   
Sbjct: 129 MAELM--------VAGKFDPTVVNGGIIHAYGSNARMGQGEWMVVEADESDGTFNRLPAT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   + +     E    +   G      D +  + L  +   +  +
Sbjct: 181 IAVVTNIDPEHMEHWGDFDRLRDGFHEFVSNIPFYGVAVCCSDHAEVQALVGR---ITDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQNMLMTLGI 302
            + ++G +  AD +       +  +  ++ LQ  G+ +E       G H   N L  + +
Sbjct: 238 RVVTYGFNAQADVRATNLTYKAGVAHFDIHLQAEGQVIEGCSLPMPGDHNVSNALSAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  + +   +AL+ F       +R+         T+ID+ Y  +P  + A +    Q
Sbjct: 298 ARHLGMNTNEIREALANFGGVN---RRFTKVGEVDGVTIIDD-YGHHPVEIAAVLKAARQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLAL 414
                 G R+  +        LS  F          D+  +  ++      +SG     L
Sbjct: 354 AIADTPGARVIAVHQPHRYSRLSDLFEDFCACFNEADVVAIAEVFAAGEDPISGASRDDL 413

Query: 415 KDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR--LINLLLEE 467
              + R  H H       D L   ++     GD+VV   + +   +   L   L ++
Sbjct: 414 VAGMIRHGHRHARALLDEDDLERLVREQARPGDMVVCLGAGTISAWANGLPERLQKK 470


>gi|212696146|ref|ZP_03304274.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676775|gb|EEB36382.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 463

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 144/404 (35%), Gaps = 46/404 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N + + +  SL +PV      LG L K             IA++GS GK+TT  M+
Sbjct: 79  AISDNNEELIAARSLGVPVVTRGVFLGGLMKNY--------KNSIAVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L +         + N  I +   L  +  +V  G  E+ ++   E +       P I
Sbjct: 131 SKILMN--------STKNPTILLGGDLDEIEGNVHVGDEEILVTEACEYKGNIRYYYPSI 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   HL  +  + +I        +  ++     LN ++   +L+           
Sbjct: 183 GIILNIDEDHLDYYKDLNDIIETFKSYLKNQDENSKTILNLNEENNKLVIDSVQG----E 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++G ++ +AD+         +     ++ ++  S E      +G H   N    +   
Sbjct: 239 LITYGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNACAAIIST 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D++T     +     +G  +R +   N     +I + Y  +P+ ++  +S L++ 
Sbjct: 299 LESGVDIETIK---NSIQSYKGLERRMQLLGNIDGCKIILD-YGHHPSEIQVNLSALAE- 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVL 412
             H +GR I V          ++    +        +   V +                 
Sbjct: 354 --HTKGRLICVW--QPHTYTRTKRLFNEFVNCFD--DADEVIITDIFAAREPFDPSISSK 407

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + DAL  +     Y  T D +  ++ S + + D V+V  S   
Sbjct: 408 DIVDALVEKGKSAKYLPTFDQVKEYVLSDIKENDQVIVTGSGDS 451


>gi|60389983|sp|Q6FFC2|MURD_ACIAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 156/465 (33%), Gaps = 80/465 (17%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-----------AGLVVVNTDMVASIG 79
             DSR   P             GHD I   VQ             A  ++++  +   + 
Sbjct: 34  VTDSRETPP-------------GHDQIPQDVQTSFGQLDTELLLQAEEIILSPGLAPQLP 80

Query: 80  SLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            +       IPV G   VL          R  ++  I+AITGS  K+T   +        
Sbjct: 81  EIQQAIAQGIPVIGDIQVL----------RRATQVPIVAITGSNAKSTVTTLFGQMAKDA 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            K  A  G+          L  +  + +  + EL    L      T  +   +AVI  ++
Sbjct: 131 GKRVAVGGNLGRPG-----LDLLKDEPELLVLELSSFQL----ETTSHLNAEVAVILNMS 181

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +     AK  IF+G++K   +  N DDS    L   S  +      SFG +
Sbjct: 182 EDHLDRHGDMLGYHQAKHRIFQGVKK---VVYNRDDSLTRPLVPDSTPMQ-----SFGLN 233

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDT 312
              D +     +  + +    + + + ++     I G H   N L  L +   +   V++
Sbjct: 234 A-PDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQGTHNIANALACLALGEAIGLPVES 292

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++ L  F   E R +  +           ++S   N  +  AAI  L       +G+ I
Sbjct: 293 MLETLKQFKGLEHRCEYVKTV---NDVRYYNDSKGTNVGATLAAIDGLGAAIEPKQGKVI 349

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +LG   +  + S      + + +         L G     ++ AL  +  + ++ T+  
Sbjct: 350 VILGGQGKGQDFSL-LRQSVEKYVKAA-----ILIGEDAQQIEQALTETTQLVHASTLKD 403

Query: 433 LFLFIQSSLVDGDVVV----------VKS--SNSCGFYRLINLLL 465
                Q      DVV+           K        F   ++ L+
Sbjct: 404 AVTQAQQYAQPEDVVLLSPACASFDMFKGYPDRGHQFVACVDALV 448


>gi|15615810|ref|NP_244114.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus halodurans C-125]
 gi|20139205|sp|Q9K7W1|MURC_BACHD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|10175871|dbj|BAB06967.1| UDP-N-acetylmuramate-alanine ligase [Bacillus halodurans C-125]
          Length = 433

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 128/362 (35%), Gaps = 50/362 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + T IA+TGS GKT+T  +L+  L S   T   IG             +   D  + +F
Sbjct: 99  QRFTSIAVTGSHGKTSTTGLLSHVLGSHCPTSFLIGDG---------TGKGAADSHYFVF 149

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R      RP   ++T I   H   F  I ++ SA  E+   ++K   I  
Sbjct: 150 EA-----CEYRRHFLNYRPDYCIMTNIDFDHPDYFDDINDVFSAFQEMAMQVKK--AIVA 202

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD   + + A         +  +G +++ DFQ R  +  SE +  +V ++     +  
Sbjct: 203 CGDDEQLQGIHANV------PVVYYGFNEDNDFQARNIEVTSEGTHFQVFVRNNHYGDFT 256

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +       V+   + L  F   +    R       G   LID+
Sbjct: 257 IPRFGKHNVLNSLAVIALCHYENIPVEVLARELKTFEGVK----RRFTEKTLGGQILIDD 312

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  + A I    Q  P      +A+          +++F  + AE L      HV
Sbjct: 313 -YAHHPTEISATIEAAKQKYPDRP--VVAIF--QPHTFSRTKAFLHEFAEALKQ--ADHV 365

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----------VVVVKSSNS 454
           +L      A ++    SI     E +  L       L + D          V++   +  
Sbjct: 366 YLCDIFGSARENKGSLSI-----EDLQALIPG-AHLLSENDLAPLQDHRSGVLLFMGAGD 419

Query: 455 CG 456
             
Sbjct: 420 IQ 421


>gi|317177431|dbj|BAJ55220.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F16]
          Length = 493

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 137/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVWELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   + +  L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKV-QLENILQATTIQGDLILF 485


>gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
 gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
          Length = 458

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 150/414 (36%), Gaps = 44/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    + LG+L K             IAI+G+ GKTTT  M
Sbjct: 77  AAIPEDNPELIYARKNNISLMTRAEFLGSLMKGHKYN--------IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++          A     +  I V   L  +  +V  G  +  ++   E +       P+
Sbjct: 129 VSHI--------ALTEDVDPTILVGGNLDIINGNVLAGKSDYFITEACEYKASFLEFYPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  I++I +  A+    + K G +  N DD     + + +      
Sbjct: 181 IGVILNIDADHLDYYKNIDDIENTFAKFVNLIPKEGYLIANADDKRVARVASNATC---- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
            + SFG   N D + +         S  +V    + +  +  +  G H   N L  +   
Sbjct: 237 NVVSFGID-NGDIRAKNISFNESGFSSFDVYKSSELLFNIELNVPGKHNILNALSAIASA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L     + I  L  F   +G  +R+     +   T+ID+ Y  +P  +KA +      
Sbjct: 296 LTLKISHKSIIDGLKSF---KGTHRRFEIKGVKNGITVIDD-YAHHPTEIKATLDAAKNY 351

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R +++  D       S S   +L  +  +Y            L L
Sbjct: 352 PHNKIYCVFQPHTYSRTLSLFDDF----SNSFSGVDELV-LADIYAAREKDTGVVSSLKL 406

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +A+ +  +      + + +  + +S L DGD+++   +     +++  + L +
Sbjct: 407 SEAINKNGVKSSNLHSFEDIVNYFKSKLNDGDILLTVGAGDV--FKIGEMFLSK 458


>gi|317182049|dbj|BAJ59833.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F57]
          Length = 493

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 137/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKTQLENILQATTIQGDLILF 485


>gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 358

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 104/315 (33%), Gaps = 52/315 (16%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+ +S DSR +    AFFA+ G H DG  FI  AV KGA  V V  +         I
Sbjct: 38  DVTVHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKGA--VTVIHEKPLPAYQAHI 95

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA--- 138
               V DV  A+   A A           I +TG+ GKT+T + +   L    K      
Sbjct: 96  CYVQVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEGKTSTVDFIWQLLRLAGKKAGFSS 155

Query: 139 --------------CIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
                            +    I V   LARM  +  ++ + E     L         VR
Sbjct: 156 TVSFSLGDEPVANPAHQTTPESITVQERLARMRDNGCEYAVVEASSHGLSPRTARLLHVR 215

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTI----FLNYDDSFFE 233
               +   +   HL      E+    KA +F  L      +K GT+     +N +D   +
Sbjct: 216 FDAGIFMNVTQEHLEFHGTFEQYRYDKANLFRALDTHAHKKKNGTVAPFGIVNLEDPSAD 275

Query: 234 LLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQ--LQG- 278
                +     + ++ F   K+A                   ++        ++  L G 
Sbjct: 276 YFAQATK----QPVFGFSLRKSAVDAAAPFPNFAGGLYADGVQEGENGLTFTIRAALDGM 331

Query: 279 -KSMEVVHHGIGYHM 292
            KS E      G+  
Sbjct: 332 QKSFEAAVPVAGFFN 346


>gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Vollum]
          Length = 243

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                  + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 1   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTAK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G
Sbjct: 118 DIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKG 167


>gi|302541868|ref|ZP_07294210.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459486|gb|EFL22579.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 485

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 141/393 (35%), Gaps = 39/393 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV    D L AL               IA+ G+ GKTTT  ML ++L ++   
Sbjct: 90  AARERGIPVVHRSDALAALMDGHR---------PIAVAGTHGKTTTTSMLAVSLRTLG-- 138

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  +    +   L       + G  E+ ++   E     H   P +A+I  +   H
Sbjct: 139 ------LDPSYVIGGDLDAPGSSAEHGGGEIFVAEADESDRSFHKYAPEVAIILNVELDH 192

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            +N++ ++EI  +     E +   GT+ ++ D      L A+        + ++G++ +A
Sbjct: 193 HANYASMDEIYDSFRTFVERVRPGGTLVISADHDGARELTAQLAGREGLRVLTYGEAADA 252

Query: 257 DFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           D ++         S + V+    L G  +       G H A N +  L   + L      
Sbjct: 253 DVRVLDVVPHGLTSEVTVRFAEALGGGEITFTVSVPGRHYAHNAVAALAAGAALDVPARD 312

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              A++ +   +   +R +         +I +SY  +P  + A +  +      GEGR +
Sbjct: 313 LAPAIASYTGVK---RRLQLKGTAAEVQVI-DSYAHHPTEIAADLEAIRG--GAGEGRVL 366

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---------WLSGFHVLALKDALP-RSI 422
            V      +   +Q    ++ E L+L + S V          + G     + DA      
Sbjct: 367 VVF--QPHLFSRTQELGAEMGEALALADASVVLDIYPAREDPVPGITSDLVIDAARHHGA 424

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            V  +     +   I      GD+V+   +   
Sbjct: 425 DVTAAHDRSAIPGLIAGMAKPGDLVLTMGAGDV 457


>gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
 gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
          Length = 246

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                  + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 4   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 63  GAIASLWKKSYGSPPKG--IPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTAK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G
Sbjct: 121 DIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKG 170


>gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis Z2491]
 gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis Z2491]
          Length = 445

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 121/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGAPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEYEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|327399129|ref|YP_004339998.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
 gi|327181758|gb|AEA33939.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
          Length = 460

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 162/450 (36%), Gaps = 51/450 (11%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV-----------FGVDDV-LG 93
           I G   + + ++    ++G  + + ++          + V              D + + 
Sbjct: 36  ITGSDVEENSYVEKLKKQGVKVYLGHSLSNIEEDVDLVVVSSAVKNDNIELIQADKLNIP 95

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT 152
            + +  + A L + +  IA+ GS GKTTT  +    L +      A IG    +I   + 
Sbjct: 96  TIKRYQLLAHLVNNSNSIAVAGSHGKTTTTSLSASLLKNANLDPTAIIGGKLRNINNNVI 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + +      + I E   S  G +     L+ P I ++T I   HL  +   E     K  
Sbjct: 156 IGKCN----YLIVEADESDGGFL-----LLNPKIGLLTNIDNDHLGFYGNFEN---EKVA 203

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
            ++ ++ +  + +N DD   +  K  S     + + ++  KSK AD      +  +  S 
Sbjct: 204 FYDFMDNSEKLIINIDDPIIKQWKNLSK---RQNLLTYSIKSKKADVYAYDIQTNAAYSI 260

Query: 272 MEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++   K +E +    IG H   N L  + +  IL    D   K LS F   +   +R+
Sbjct: 261 FSIKTPTKKIEQIKLKIIGTHNISNALAVVCLAEILEIGEDIIRKTLSEFEGVD---RRF 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLS--------QISPHGEGRRIAVLGDMCEMG 382
               N     + D+ Y  +P  ++  +               PH   R   ++ +    G
Sbjct: 318 TYVGNYRNLKVYDD-YAHHPTEIRETLKAAKLISKNIYAVFQPHRFSRTAYLMDEFA--G 374

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
               +  + +   L ++  S   + G     L   +   S +  Y    D L   +    
Sbjct: 375 SFKDAKRVFV---LDIFPASESPIDGIDSQILAQKVNEISANAVYINNEDMLKKHLDQIE 431

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            DG VV +  + S    R+I  +  ++  I
Sbjct: 432 EDGVVVAL-GAGSV--SRIIRKITNDYKNI 458


>gi|308233776|ref|ZP_07664513.1| UDP-N-acetylmuramate--alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943775|ref|ZP_08241240.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
 gi|327491744|gb|EGF23518.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
          Length = 470

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 127/370 (34%), Gaps = 36/370 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L   A  +A+ G+ GKTTT  M+   L  + K           I           +  +
Sbjct: 105 YLSHHAITVAVAGTHGKTTTSSMVATMLDHVGKD---PSFLIGGIVEEYKTNGKNGNGGY 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S    +      + P + VIT I   HL ++  ++ +     E  + +   GT
Sbjct: 162 FVCEADESDGSFL-----YLNPDVVVITNIEADHLDHYKTMDNLEHTFCEFMDLVGDAGT 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKS 280
           I +  ++     L   ++    + + ++G  +  D+  ++  Q  +   +++     G  
Sbjct: 217 IVVCGENHHCVELARSTN----RHVVTYGFDETCDYVCKQTVQSHKIRNNFVVCAPDGSC 272

Query: 281 MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + +      G H   N   T+ +  +L  ++  A  ALS F        R    +     
Sbjct: 273 LSISLPANPGKHNVLNATATMAVADVLGVNLQDAAHALSNFKGA----HRRFTHVGDIDD 328

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + + Y  +P  +KA ++    +  +   R + V          +Q+   + A      
Sbjct: 329 ICVVDDYGHHPTEIKATLAAAKNLEFN---RIVCVF--QPHRYSRTQNLQDEFAHAFDDA 383

Query: 400 NI---------SHVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           ++             + G + + L + +    +   V +      +   + S +   D++
Sbjct: 384 DVLIVTEVFSAGETPIPGVNGMMLAEKIQASTKHCDVTFVSQKKDVVAHLLSIVRPHDLI 443

Query: 448 VVKSSNSCGF 457
           + + +     
Sbjct: 444 ITQGAGDVTM 453


>gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN]
 gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae
           Br4923]
 gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae]
 gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923]
          Length = 495

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 152/435 (34%), Gaps = 37/435 (8%)

Query: 53  GHDF-ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD  +L  +  GA  V+     +         V      +  L + AV ARL    T +
Sbjct: 61  GHDASLLDLLPGGATAVITIRTAIPKTNPEL--VEARRRGIPVLLRSAVLARLMDGCTTL 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKTTT  ML +AL             +    V   LA +  +   G+    ++ 
Sbjct: 119 MVAGTHGKTTTTSMLVVALQHCG--------CDPSFVVGGELAVVGTNAHHGLGACFVAE 170

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P++AV+T I   HL  +  ++          E     G + +  DD  
Sbjct: 171 ADESDGSLLEYTPNVAVVTNIDSDHLDFYGSVDAYIRVFDSFVERFALGGALVVCNDDPG 230

Query: 232 FELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVH 285
              L  ++  LGI+ +  +G      +    +L  W+Q    +   +QL G+  S  +  
Sbjct: 231 AAALARRTAELGIR-VLRYGSDDRIGETLAARLLSWEQQGTGAVAHIQLAGQPNSRVMRL 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ---GFFTLI 342
              G HMA N L  L     + A  D  +  L+ F     R +    +           +
Sbjct: 290 PVPGRHMALNALGALLAAIEIGASTDEVLDGLAGFRGVRRRFELVGTSGVGQASNSLVRV 349

Query: 343 DESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            + Y  +P  + A ++     +   G GR I V      +   +++   +    LS    
Sbjct: 350 FDDYAHHPTEISATLAAFRIMLEQSGGGRCIVVF--QPHLYSRTKALSREFGRALS--AA 405

Query: 402 SHVWLSG-----FHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             V++ G        LA       + H    V Y      + + + ++   GDV+V    
Sbjct: 406 DEVFIVGVNGAREQPLAGVSGASVAKHVSVPVRYIPDYSAVVIEVAAAAGPGDVIVTMGI 465

Query: 453 NSCGF--YRLINLLL 465
              G     ++  L 
Sbjct: 466 GDVGLLGPEIVAALR 480


>gi|160947656|ref|ZP_02094823.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
 gi|158446790|gb|EDP23785.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
          Length = 466

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 156/417 (37%), Gaps = 43/417 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + +    S+ +P       LGAL        +R+    IAI+GS GK+TT  M+
Sbjct: 79  AILPDNEELIKAKSIGVPCVTRGQFLGAL--------MRNYTHSIAISGSHGKSTTTSMI 130

Query: 127 TIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  L +S       IG   + I   +    +  + D+ + E        + +      P 
Sbjct: 131 SKILINSPFDPSILIGGNLDEIDGNV----LCGNEDYLVTEACEFKANILHY-----YPS 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+I  I   HL  +  ++ I        + L++     +N DD     L          
Sbjct: 182 MAIILNIDEDHLDFYKNLDHIVDTFIGYMKNLDENSKAIINIDDPNCLPLLEHIKG---- 237

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQS-WMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +FG  ++NA + +             +++  +        + IG H   N    +  
Sbjct: 238 ETITFGINNENATYNITNISFDKVGHPCFDIENEKFGKHHFCLNIIGRHNIYNAAAAIIA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 DV+    A+S +     R + Y    N    T++ + Y  +P  +K+    LS 
Sbjct: 298 TYETGIDVEYIKNAISKYKNLHRRMEVYGVIGNGKKATILTD-YGHHPREIKSC---LSS 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLA 413
           I+ H EGR + +          +++   D A+     +   ++ ++ +        H + 
Sbjct: 354 IAEHKEGRLVCIF--QPHTYSRTKALLNDFAKCFDDCDEVIVTEIYAAREKFDPTIHSID 411

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           L + L +  ++  Y +T +    +I  +  D D ++     +     L  +++E++ 
Sbjct: 412 LVEKLNKNGVNAIYLKTFEEARDYIFETFKDKDTIITTGCGNPH--ELAKMIVEDYK 466


>gi|323575264|emb|CBY88822.1| hypothetical protein [Staphylococcus aureus]
          Length = 348

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 125/285 (43%), Gaps = 6/285 (2%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G+++I    +    L ++ T+          P   ++D    L KLA   RL+ K  ++A
Sbjct: 64  GNEYIKKDKED---LGLIITETYVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHPVVA 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS+GK++T+ +++  L           + N    V L L +M    +F + E+ ++ L
Sbjct: 121 ITGSMGKSSTRMLISAGLKDYYP-LQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSLNAL 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +   ++L++P+IA++T I  AH+S F  I  I   KA IF+GL   G   +N D    
Sbjct: 180 NAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDTLHS 239

Query: 233 ELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           ++L  ++       + ++     +A    +  +     + + +   G+      + I   
Sbjct: 240 DILIERAK-QNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDG 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           M +N L T   +S L   ++ A++ LS F P E            
Sbjct: 299 MVENSLATFATLSHLDIPLERALENLSTFKPFEKVLNLKEVETPN 343


>gi|6332754|dbj|BAA86636.1| hypothetical protein [Staphylococcus aureus]
          Length = 350

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 125/285 (43%), Gaps = 6/285 (2%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G+++I    +    L ++ T+          P   ++D    L KLA   RL+ K  ++A
Sbjct: 64  GNEYIKKDKED---LGLIITETYVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHPVVA 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS+GK++T+ +++  L           + N    V L L +M    +F + E+ ++ L
Sbjct: 121 ITGSMGKSSTRMLISAGLKDYYP-LQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSLNAL 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +   ++L++P+IA++T I  AH+S F  I  I   KA IF+GL   G   +N D    
Sbjct: 180 NAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDTLHS 239

Query: 233 ELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           ++L  ++       + ++     +A    +  +     + + +   G+      + I   
Sbjct: 240 DILIERAK-QNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDG 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           M +N L T   +S L   ++ A++ LS F P E            
Sbjct: 299 MVENSLATFATLSHLDIPLERALENLSTFKPFEKVLNLKEVETPN 343


>gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 481

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 164/479 (34%), Gaps = 71/479 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             +   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFEL 167
                LS      A + + N  +                    +    +  D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+  H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   ++    E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFRFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQAGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           V+L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|229543492|ref|ZP_04432552.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
 gi|229327912|gb|EEN93587.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
          Length = 437

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 162/481 (33%), Gaps = 88/481 (18%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG  +         +    +  +  +  +I P     A  G  + D H+ I 
Sbjct: 21  LHDIGYEVQGSDVEKRFFTQQALEDAGIKILPFNRENIHPGLTVIA--GNAFPDTHEEID 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+++G                  IPV      LG   K           T +A+TG+ G
Sbjct: 79  EAMKRG------------------IPVIRYHKFLGEFLKNF---------TSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +  IK T   IG             +     ++ +FE       E R  
Sbjct: 112 KTSTTGLLAHVMHEIKPTSYLIGDG---------TGKGVPGAEYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   ++ I+++ SA  E+   ++K   I    DD   + ++AK
Sbjct: 158 FLSYHPDYAIMTNIDFDHPDYYANIDDVFSAFQEMALQVKKG--IIAYGDDEQLQKIQAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                   +  +G  +  DFQ R      + +  +V ++            G H   N L
Sbjct: 216 V------PVVFYGFEEGNDFQARNIVTEPQGTKFDVVVRNNFYGTFEIPSFGNHNVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      + +     L  FH  + R              +I + Y  +P  +KA I
Sbjct: 270 GVIALCQYEGIEKEAVETHLKTFHGVKRRFTEKEI-----GTQIIIDDYAHHPTEIKATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
               +  P  E   +AV          +Q+F  + AE L+L     V+L           
Sbjct: 325 DAARKKYPERE--LVAVF--QPHTFSRTQAFLTEFAESLNL--ADRVFLCDIFGSAREHH 378

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYRLINLLLE 466
           G   +           +   E M  L        ++  V++   +     + +    LL+
Sbjct: 379 GKLSIYDLQEKVSGSQIIKEEDMSPLLG------IENSVILFMGAGDIQKYQKAYEALLQ 432

Query: 467 E 467
           +
Sbjct: 433 K 433


>gi|296272623|ref|YP_003655254.1| Mur ligase middle domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096797|gb|ADG92747.1| Mur ligase middle domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 478

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 126/344 (36%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              IIAIT S GKT+ K  L   L S    Y    S N   G+ L + R +P +    I 
Sbjct: 156 DLKIIAITASYGKTSIKNYLYQILKSKFNAYKTPRSVNTLAGLVLDVNRDLPENTQIYIA 215

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +++ +    A++  +   H+  F  ++ I   K EI +  +       
Sbjct: 216 EAGARMQGDIEEISNFLHQDYAILGQVGEQHIEYFKTLDNIIHTKMEILKSPK------- 268

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       K+       I  + K +     L   K   +  W +V +  K      
Sbjct: 269 ----------MIKAFVHESVPILDYEKIEKFPNDLNITKSNLDGIWFDVNIDEKQEHFYA 318

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + +   L   +D    AL    P E R ++       G   +ID+S
Sbjct: 319 PILGSFNAVNLTACILMAKELGMSIDQIKIALDKIKPVEHRLQKIE----AGGKVIIDDS 374

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A+++ S+     +GR++ +   + E  + +      LA+ ++  +   V 
Sbjct: 375 FNGNFEGMLEAVNLCSE----YKGRKVIITPGLVESTDETNIL---LAKEINK-HFDFVI 426

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L+G     L             +    +   +      GD+++ 
Sbjct: 427 LTGSLNTHLFSDNIDKNKQFILKDKSKMEETLIEKTRAGDLILF 470


>gi|239983058|ref|ZP_04705582.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291454889|ref|ZP_06594279.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291357838|gb|EFE84740.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
          Length = 467

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 141/390 (36%), Gaps = 36/390 (9%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              L IPV    D L AL               IA+ G+ GKTTT  +L ++L+++ +  
Sbjct: 89  AAELGIPVVHRSDALAALMD---------GTRPIAVAGTHGKTTTTSILAVSLAALGR-- 137

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                 +    +   L     +   G  E+ ++   E     H   P +A++  +   H 
Sbjct: 138 ------DPSYAIGGDLDAPGSNALHGTGEIFVAEADESDRSFHKYTPEVAIVLNVELDHH 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKN 255
           +N++ IEEI  +       +   GT+ ++ D      L  +  A G+   T+ ++G++ +
Sbjct: 192 ANYASIEEIHESFETFAARIVPGGTLVISADHEGARELTRRLAAKGLPGVTVRTYGEAAD 251

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++        +S + V++ G  +       G H A N +  L     L         
Sbjct: 252 ADVRVVSIVPQGLRSEVTVRIDGAELTFGVSVPGRHYALNAVAALTAAVALGIPAAEMAP 311

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A++ +   +   +R +         +I +SY  +P+ M A +  +          R+ VL
Sbjct: 312 AIAAYTGVK---RRLQLKGEAAGVQVI-DSYAHHPSEMTADLEAIRGAVAADA--RLLVL 365

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV---------WLSGFHVLALKDAL-PRSIHVH 425
                +   +Q    ++ + L L + S V          + G     + DA       V 
Sbjct: 366 FQ-PHLFSRTQELGKEMGQALGLADASVVLEIYPAREDPIPGVTSALIIDAARAAGADVT 424

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                      +      GD+V+   +   
Sbjct: 425 ALADRSAAASVLAGMAKPGDLVLTMGAGDV 454


>gi|16126785|ref|NP_421349.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           CB15]
 gi|221235565|ref|YP_002518002.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           NA1000]
 gi|23821884|sp|Q9A5A6|MURC_CAUCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765989|sp|B8H086|MURC_CAUCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13424109|gb|AAK24517.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus CB15]
 gi|220964738|gb|ACL96094.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus
           NA1000]
          Length = 473

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 157/430 (36%), Gaps = 51/430 (11%)

Query: 48  GPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G   + GHD    A  +GA  +V +T + A    +       +P+    ++L  L +L  
Sbjct: 57  GARIFIGHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLVRRAEMLAELMRLQF 113

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +A+ G+ GKTTT  M+   L +           N  I           + 
Sbjct: 114 ---------SVAVGGTHGKTTTTSMVAALLDAGGLD---PTVVNGGIINAYGTNAKVGEG 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E   S    ++     ++  +A++T I   HL ++   + +     +  + +   
Sbjct: 162 DWIVVEADESDGSFLK-----LKSTVAIVTNIDAEHLDHWGDFDAVKKGFQDFIQNIPFY 216

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +  D    + L ++      + + ++G +  A+ ++   +   E +  ++ +  ++
Sbjct: 217 GFAAVCTDHPEVQALTSRIEN---RRLVTYGTNPQAEVRVSNIEMGPEGATFDIIVSPRA 273

Query: 281 MEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            E V          G+H   N    + +   L  D +   K L+ F   +   +R+    
Sbjct: 274 GEAVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAEAIAKGLAGFGGVK---RRFTTTG 330

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----GELSQSF 388
                 ++D+ Y  +P  + A +     ++P+  G+ IAV+       +     E S  F
Sbjct: 331 VANGIRVVDD-YGHHPVEIAAVLKAARAVTPN--GKVIAVVQPHRFTRLRDLMTEFSSCF 387

Query: 389 H-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGD 445
           +  D   V  +Y      + G    AL   L +  H      E    L   I +    GD
Sbjct: 388 NDADTVIVADVYTAGEQPIPGVDRDALVAGLKKFGHRRALPLENPTALPRLIAAEATSGD 447

Query: 446 VVVVKSSNSC 455
           +VV+  +   
Sbjct: 448 LVVLLGAGDI 457


>gi|262202909|ref|YP_003274117.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
 gi|262086256|gb|ACY22224.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
          Length = 529

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 152/453 (33%), Gaps = 53/453 (11%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           GHD    A+ +  G   V+V T       +  + V      +  L +  V A L +    
Sbjct: 65  GHD--PSALDQIPGGPSVIVTTHAAIPKTNPEL-VAARSRGIPILLRPRVLAELMAGHRT 121

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + I G+ GKT+T  M  +AL    +  +        IG  L  +            +  +
Sbjct: 122 LLIAGTHGKTSTTSMAVVALQHCGQDPS------FAIGGELNESGTNAHHGHDGVFVAEA 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +   L +   P + V+T I   HL  F  IE   +   +  + +   GT+ +  DD 
Sbjct: 176 DESDGSLLEYT--PDVVVVTNIDVDHLDFFGTIERYVAVFDDFADRIVDGGTLVVCLDDP 233

Query: 231 FFELLKAKSHALGIKT---IYSFGKSKNADF--------QLRKWKQCSEQSWMEVQL--- 276
               L  +  A        +  +G+  +A           L  W   +      V+    
Sbjct: 234 GAAALGGRVAARLGDRGVAVLGYGEGVHAGLAPGVHHVAHLLSWSASATGGQARVRFTAP 293

Query: 277 ---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +     V     G HM+ N +  +   + L AD+   I  +  F    G  +R+   
Sbjct: 294 LVDEPSEFTVGLTLPGKHMSLNGIGAIIGCARLGADLAGVISGIGAFG---GVHRRFEFR 350

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQI--------SPHGEGRRIAVLG------DMC 379
              G   +ID+ Y  +P  + A ++    +        +    GR IAV         M 
Sbjct: 351 GRCGGVDVIDD-YAHHPTEVAAVLTAARDMVTARTDGPATGRAGRVIAVFQPHLYSRTME 409

Query: 380 EMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
             GE + +  H D A +  +Y      + G     + D +   I   ++  +  L   + 
Sbjct: 410 FAGEFATALDHADAAVIADVYGAREQPIPGVSGRIIADRM--HIPAQFAPDLSRLAAQVA 467

Query: 439 SSLVDGDVVVVKSSNSCGF--YRLINLLLEEFP 469
                GD+V+   +         ++  L    P
Sbjct: 468 QITRPGDIVLTLGAGDITMQGPEILAALENVMP 500


>gi|260462091|ref|ZP_05810335.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031951|gb|EEW33218.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
          Length = 468

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 153/432 (35%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +P+    ++L  L +   A
Sbjct: 54  ECFVGH----KAENLGEAEVVVVSTAIKKSNPELKAAREKLLPIVRRAEMLAELMRFRQA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    +AI G+ GKTTT  M+   L +       I   N  I           D +
Sbjct: 110 ---------VAIGGTHGKTTTTSMVATLLEAGGLDPTVI---NGGIINAYGTNARMGDGE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   IAV+T I P HL ++   +++  A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPAEIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + L ++      + + ++G++  AD +    +     S  +V ++ +  
Sbjct: 213 FGVMCTDHPEVQALVSRIE---DRRVITYGENAQADVRFTNHRMAGAISEFDVVIRNRKT 269

Query: 282 -------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  ++     G H   N    + +   L    +   K LS F   +   +R+    
Sbjct: 270 GGQTAISDLRLPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVK---RRFTHTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
           +     + D+ Y  +P  + A +      +   +GR IA+        L D+    E S 
Sbjct: 327 SWNGVDVFDD-YGHHPVEIAAVLKAARSAT---KGRVIAIAQPHRFTRLHDLFN--EFSA 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   V  +Y      + G     L   +    H    Y E    +   I+     
Sbjct: 381 CFNDADTVMVAPVYAAGEEPIDGVTSDELVSRIRAGGHRDARYIEGPAAIAPVIRDLAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV   + + 
Sbjct: 441 GDFVVFLGAGNI 452


>gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
 gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
          Length = 481

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 168/479 (35%), Gaps = 69/479 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++   +G             IS DSR +     FF +KG ++   +F+  AV  G 
Sbjct: 16  NFREIID--KGQYFYHYRDLVFEKISYDSREVDASTLFF-VKGDNFKK-EFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
            L +   D       + IP   V+DV  A++   +      + K  ++A TG+ GKTT+ 
Sbjct: 72  QLYISEMDF-----EVGIPALIVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTSA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 L    K  A + + N  +               L L +M            I E
Sbjct: 127 YFAYHILQQSHK-PALLSTMNTTLDGEHFFKSALTTPESLDLFKMMATAVENGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + E    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SLAVV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N +   FE+L  +  ++       +G+  +   +               +  GK  E  
Sbjct: 241 VNSEMDHFEVLAEQVASMEHD---FYGQHSDNQIR--------HSQAFSFETSGKLAEKF 289

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N L  +     L A V    K ++        G+        G    +D
Sbjct: 290 DIQLIGRFNQENALAAVLACLRLGASVADIKKGIA---STRVPGRMEVLTQQNGAKVFVD 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+   +SV+ +   H +G+ I VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGVSLANLLSVVQE---HQKGKIILVLGA---TGNKGESRRKDFGLLLNQHPELT 398

Query: 404 VWLSG-----FHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
           V L+         +A+   +   I       ++  + + + +  +  +GD V++  K +
Sbjct: 399 VILTADDPNYEDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKGA 457


>gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
 gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
          Length = 493

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 157/480 (32%), Gaps = 53/480 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   LL+AI   S        +  IS  S+       FFA  G   DG  +I  A++ 
Sbjct: 1   MKTLRTLLEAIGIDSTPQNASILIETISQHSKQCTANSVFFAFHGLRTDGILYIQEAIEH 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121
           GA  ++ + ++        +    V     A   +  A    S+    II ++G+ GK+T
Sbjct: 61  GAVCIISDQNLSNLNLPAKVQWHQVHKPHTAFALMCSALNDNSQDKLGIIGVSGTDGKST 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNN-----------------HIGVPLTLARMPVD-VDFG 163
           T + L   L +       + + +                     + + L R   + V   
Sbjct: 121 TCDYLYQILEANGVKTGLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFLRRCVENKVQKV 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E     L +       +    A++T +   HL     +EE   AK  +   L+  G  
Sbjct: 181 ILECTSHALSDTFDRLAGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVNLVRSLKDGGLF 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             + D++  E   A+  +     I         D  LR   +      + V +  + ++ 
Sbjct: 241 VTSTDNAKLEAFTAELRSTTKALIL------GKDVMLRI--EFMGYQGVVVDILDQRIQT 292

Query: 284 VHHGIGYHMAQNM-LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +A N  L T     +L  DV   +  +    P +GR ++    L  G  T+I
Sbjct: 293 SLLLPS--LATNALLATFCASHLLGIDVTALLVLIKSLKPVKGRMQQIENTL--GVRTII 348

Query: 343 DESYNANP-ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           D ++ A+    +               G  IAV G     GE   S    + ++ + Y  
Sbjct: 349 DFAHTADAYDGI-----FFFAKRTCEGGDIIAVFGC---AGERDTSKRSPMGKIANKY-C 399

Query: 402 SHVWLSGFHVLALKD----------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           S + L+        +              +  V   E+         S    GD ++   
Sbjct: 400 STIILTEEDPRREGNQQIFSDLRFHMNNPACRVWEIESRREAIRKAVSIAQCGDTLLFLG 459


>gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
 gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
          Length = 536

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 164/488 (33%), Gaps = 58/488 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +  A+   +        V GI+++SR++   + + A+ G    G DF+  AV+ GA 
Sbjct: 19  LATIADALGVAAPDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAV 78

Query: 67  LVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVAARLRSK-----ATIIAITGSVG 118
            VV +      +   G   +PV  V +   A+ +LA              T+  +TG+ G
Sbjct: 79  AVVTDDAGARQLALAGEQPVPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTNG 138

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHLGEIR 176
           KTTT   +   L +++K    IG+     G     +L   P   D       M   G   
Sbjct: 139 KTTTTYFINSLLRALEKKPGLIGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLDA 198

Query: 177 ------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                            V   +A  T +   HL     ++E    KAE+F    +     
Sbjct: 199 ASMEVSSHAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFTA-GRARHAV 257

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS---FGKSKNADFQLRKWKQCSEQSWMEV-QLQGKS 280
           +  DD +   L A++  + + T+ +    G S + D+++         S  E+    G++
Sbjct: 258 VTVDDDWGRQL-AETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELKHADGRT 316

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQG 337
           + V     G     N  +   +V     D   +  A+ A   F        R +    + 
Sbjct: 317 LRVHTGLPGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPG--RMQLISTEP 374

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +    +  NP ++  A+  +    P    R I V G     G+  +     +  + +
Sbjct: 375 ASVV---DFAHNPDALSRALEAVRS--PREGSRVIVVFGA---TGQRDKGKRPTMGAIAA 426

Query: 398 LYNISHVWLS-----GFHVLAL-KDALPRSIHVHYSETM----------DGLFLFIQSSL 441
                 V +S          A+  + L  +     SE +          D          
Sbjct: 427 RL-ADVVIISDDDPHDEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMA 485

Query: 442 VDGDVVVV 449
              D +++
Sbjct: 486 TGKDTILI 493


>gi|21224390|ref|NP_630169.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces coelicolor
           A3(2)]
 gi|6919932|sp|Q9X827|MURC_STRCO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4691386|emb|CAB41553.2| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           coelicolor A3(2)]
          Length = 462

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 155/439 (35%), Gaps = 45/439 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVF 86
           D++  A  +A  A+    + GH      +   A  VVV++ +      L       IPV 
Sbjct: 40  DAKESATADALRALGATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L AL          +    IA+ G+ GKTTT  ML ++LS +             
Sbjct: 98  HRSDALAAL---------MNGLRPIAVAGTHGKTTTTSMLAVSLSELD--------LGPS 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L     +   G  E+ ++   E     H   P +A++  +   H +N++ ++EI
Sbjct: 141 YAIGGDLDAPGSNALHGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +       +   GT+ +  D      L  +    G     ++G+S++AD ++      
Sbjct: 201 YESFETFAGKIVPGGTLVIAADHEGARELTRRLA--GRVRTVTYGESEDADVRILSVVPQ 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +S + V L G  +       G H A N +  L   + L         AL+ +   +  
Sbjct: 259 GLKSEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVK-- 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R +         ++ +SY  +P  M A +     +       RI VL     +   +Q
Sbjct: 317 -RRLQLKGEAAGVQVV-DSYAHHPTEMTADLEA---MRAAVGDARILVLFQ-PHLFSRTQ 370

Query: 387 SFHIDLAEVLSLYNISHV---------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLF 436
               ++ + L+L + S V          + G     + +A       V      D     
Sbjct: 371 ELGKEMGQALALADASVVLDIYPAREDPIPGVTSELIVEAARAAGADVTPVHDKDASPAL 430

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           +      GD+V+   +   
Sbjct: 431 VAGMAKAGDLVLTMGAGDV 449


>gi|305432184|ref|ZP_07401348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
 gi|304444727|gb|EFM37376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
          Length = 475

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 130/355 (36%), Gaps = 31/355 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-A 154
           NK     +   +  II IT S GKT+ K  L   L    KTY    S N  +G+   +  
Sbjct: 143 NKAKAKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINT 202

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D    I E G    G+I  +T  + P I ++  I  AHL  F  IE     K E  
Sbjct: 203 NLSDDTQIYIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEYFKNIENTRKTKLEAL 262

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                               L   +     + I  +      D +L+  +   +    ++
Sbjct: 263 NSKRLEKAF-----------LHTSTQKSEDELILLY------DDKLQDIQASLQGLEFKI 305

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L+ K+ E     +G   AQN+   +   + L   ++   K +   +  E    R +   
Sbjct: 306 NLENKTYEFKSQILGDFNAQNLCACILCANYLGVKIEKIQKQVLKINSVE---HRLQIIS 362

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F +ID+ +N N   M A+      +  + +GR++ V   + E+    +  ++ LA+
Sbjct: 363 KEPKF-IIDDGFNGNYKGMSASYK----LCKNYKGRKVLVSPGIVEV---DKDENVKLAK 414

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +++      V  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 415 IINECFDLAVITAQVNADIFKKELK--IKTIILKEKADLVKVLAKETQQGDLILF 467


>gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 393

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 123/386 (31%), Gaps = 50/386 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           +          T++ +TG+ GKTT  ++L      +    A +G+  N +   +  A+  
Sbjct: 1   MFFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNT 60

Query: 158 ----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                              DF   E+    L + R     +    A+ T +   HL    
Sbjct: 61  TGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQ 118

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF-- 258
            +E  A+AK  +F  L+ T    +N DD    + L     A+ +        S NADF  
Sbjct: 119 SMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV--------SMNADFKV 169

Query: 259 ------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                 +        + + +  +    +  +    IG     N+L+ +  +      ++ 
Sbjct: 170 GSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLEN 229

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +          GR +  R        T+I + Y   P +++ A+    +   H +G   
Sbjct: 230 LLATAKSLKGVCGRMEMIR---YPNKPTVIVD-YAHTPDALEKALIAARE---HCQGELW 282

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYS 427
            + G   +     +     +AE  +   I           +     +         V   
Sbjct: 283 CIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGII 342

Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451
                   F   S V+ DV+++  K 
Sbjct: 343 PDRAQAIQFAIESAVENDVILIAGKG 368


>gi|111018100|ref|YP_701072.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
 gi|123145349|sp|Q0SHS2|MURC_RHOSR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110817630|gb|ABG92914.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
          Length = 503

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 148/440 (33%), Gaps = 65/440 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV     VL +L +             + ++G+ GKT+T  M
Sbjct: 80  AAIPKDNPELVEAARRGIPVILRPAVLASLMQGHR---------TLLVSGTHGKTSTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            ++    V   L     +   G  ++ ++   E         P 
Sbjct: 131 LVVALQHCG--------FDPSFAVGGELNEAGTNAHHGSGDVFVAEADESDGSLLQYEPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +   HL  F   E       +    L   G +    DD     L  +  A G+ 
Sbjct: 183 VVVVTNVEADHLDYFGSTEAYIQVFDDFAARLSPGGLLVACLDDPGSAALAQRVAARGLP 242

Query: 246 --TIYSFGKSKNAD------------FQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIG 289
              +  +G +++AD             +L  ++       ++ QL G+           G
Sbjct: 243 GVRVLGYGSAEDADGAFASVDGVEVGARLLSFEARDVGGVLQFQLAGEQSPRTVRMGVPG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HMA N L  L       ADVD  ++ ++ F    G  +R++    +    + D+ Y  +
Sbjct: 303 RHMALNALAALLAAREAGADVDEILEGIAGFG---GVHRRFQFTGREHGVRVFDD-YAHH 358

Query: 350 PASMKAAISVLSQI--SPHGEGRR-----------IAVLGDMCEMGELSQSFHIDLAE-- 394
           P  ++A +   + +   PH   RR           I V      +   + +F  +     
Sbjct: 359 PTEVRAVLGAAADLVRQPHEADRRESEDSVRSGKVIVVF--QPHLYSRTATFAEEFGHAL 416

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L G     +  AL  S  VHY   +      + +    GDVV
Sbjct: 417 DLADEVVVLDVYGAREEPLPGVSGALV--ALSVSKPVHYQPDLSQAPRQVAALASPGDVV 474

Query: 448 VVKSSNSCGF--YRLINLLL 465
           +   +        ++++ L 
Sbjct: 475 ITMGAGDVTMLGNQILDALR 494


>gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
 gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
          Length = 531

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 154/480 (32%), Gaps = 50/480 (10%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   DL++                FV+GI+  ++S+   + F A +G    G +F+    
Sbjct: 30  YRLSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQV- 88

Query: 62  QKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            +    V+ +      + S  +P     +   D     L  LA          I  ITG+
Sbjct: 89  -QSCAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGT 147

Query: 117 VGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMP-----------VDVDF 162
            GKT+T  +    L  +  +      IGS  +     LT   +               DF
Sbjct: 148 NGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADF 207

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E     +   R L  +V   +A  T + P H+     +E    AK  +F   +++ +
Sbjct: 208 FALEASSHAINRGR-LGDIV-LEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN-KRSNS 264

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             +N D  +   L  ++      ++ S    +G      +Q    +      +  +   G
Sbjct: 265 AVINIDTPYGIRLFKETGCSA--SVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPSG 322

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +E     +G   A N  M + I+  L  D++     L      +            G 
Sbjct: 323 YRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGN 382

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLS 397
              +   +     +++ A+     I+    GR I ++  D    G+   S    L ++  
Sbjct: 383 SPRVIVDHGHTVDAVETALVAAKSIT---RGRLITIINAD----GQRDPSKRKHLGQLCG 435

Query: 398 LYNISHVWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448
            Y+       G     +   ++  +   +      V    +M    L         D V+
Sbjct: 436 AYSDKLFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVL 495


>gi|269215876|ref|ZP_06159730.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
 gi|269130826|gb|EEZ61902.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
          Length = 463

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 154/443 (34%), Gaps = 57/443 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F      + D    ++ A    +  V      V     L IPV+    +L  L +    
Sbjct: 55  VFVGHDAANVDPACDVVVA----STAVPDTNPEVMRARELGIPVWQRAHMLAELGR---- 106

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVD 159
                    +A  G+ GKTTT  ML  A+ ++    T+   G  + +        R    
Sbjct: 107 -----GKKTLAAAGTHGKTTTSSMLAGAVDALGLDPTFIVGGMVDAY--------RTNAK 153

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLE 218
              G + +  +   +  FL   + P++A++T +   HL     GI+EI +        + 
Sbjct: 154 SGTGDYYVVEADESDGSFLN--LSPYVALVTNVEADHLDHYVGGIDEIRATFKTFMASVP 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G + +  +D     L   +     + + S+G S   D ++  +      S   +    
Sbjct: 212 ADGALVVCGEDPSLAELAEST----GRRVVSYGFSPACDVRVSDYATHGVSSTFTLSFPD 267

Query: 279 KSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++    +    G H A N    LG++  L  DV +A    +      G  +R+      
Sbjct: 268 GTVVESGLAKNPGRHNALNAAGVLGVIWALGLDVASA---SAGIASYSGVRRRFDLKGEA 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQS 387
               ++D+ Y  +P  + A ++  +            PH   R  A L D     E   +
Sbjct: 325 AGVAVVDD-YAHHPTEIAATLAAATSLDFNRVHVIFQPHRYSR-TASLAD-----EFGPA 377

Query: 388 F-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVD 443
           F  +D   VL +Y      + G     + D++        V Y E  D     +     +
Sbjct: 378 FAGVDSLTVLGVYAAGEDPIEGVSGRLVADSVRACGSVSDVSYIEDFDEAIRSVVDRARE 437

Query: 444 GDVVVVKSSNSC-GFYR-LINLL 464
           GD+V+   + S       +++ L
Sbjct: 438 GDLVITMGAGSVTKLGPGIVDAL 460


>gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha153]
          Length = 445

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
 gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
          Length = 417

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 136/376 (36%), Gaps = 36/376 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 38  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 97

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 98  RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 157

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 158 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 215

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD          
Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 271

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 272 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++ +
Sbjct: 332 VALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRSVL 386

Query: 358 SVLSQISPHGEGRRIA 373
           + LS  +P   G R  
Sbjct: 387 TTLS--APRTAGWRWC 400


>gi|239787357|emb|CAX83834.1| UDP-N-acetylmuramate--alanine ligase [uncultured bacterium]
          Length = 450

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 133/370 (35%), Gaps = 30/370 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  +   +      IA++GS GKTTT  M+   L+  +     I     +        
Sbjct: 88  LKRHQMLGEIIRGYKTIAVSGSHGKTTTTAMMGALLTEAQYDPLIINGGIVNAFGSNVSL 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +     + + E   S   +  FL    +P I+VIT I   H+  F   E +  A     
Sbjct: 148 GLGS---WCVVEGDES---DGSFLNM--QPIISVITNIDLEHMEFFKTQESLEKAFQTFI 199

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E     G      DD    ++  K+      TI ++G+S+N+D +L    +    S+  V
Sbjct: 200 ENTSILGCTLACIDDPLAAVVIKKT---PHHTIITYGESENSDIRLTALDKGITGSYFSV 256

Query: 275 QLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           + + K  +      +G H   N L  +G    L  D DT  + L  F    G  +R+   
Sbjct: 257 KTRRKEYKNLFLPMMGKHNVLNSLAIVGAGEFLDLDEDTIRETLKNFQ---GVQRRFTIR 313

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--- 390
                   +D+ Y  +P  ++  I    Q        +I  + +      +    H    
Sbjct: 314 GTVNSAVFVDD-YAHHPREIETVIKSAKQYGAT----KIVAIVEPHRYSRVKDLLHEYAP 368

Query: 391 --DLAE---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             D+A+   ++ LY      + G    A+   L +       ET + L   I++ L  G 
Sbjct: 369 VLDIADDIILIPLYGAFEEPIEGVSSFAIAQQLSK--PYCLVETFEDLIEQIKTRLDPGT 426

Query: 446 VVVVKSSNSC 455
           + +   +   
Sbjct: 427 IFLFMGAGKI 436


>gi|229815105|ref|ZP_04445442.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
 gi|229809335|gb|EEP45100.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
          Length = 474

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 139/404 (34%), Gaps = 45/404 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      +     L IPV+    +L AL             T +A  G+ GKTTT  M+
Sbjct: 85  AIPETNPELVRARELGIPVWHRAKMLSALG---------YGRTTVACAGTHGKTTTSSMV 135

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  ++            +           D ++ + E   S    +      + PH+
Sbjct: 136 ATMLDRMELD---PSFLIGGVVEGYGTNGKNGDGEYFVVEADESDSSFL-----YLDPHV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T I   H+ ++  +E+I          + + GT+ +  +D     L         +T
Sbjct: 188 VIVTNIEADHMDHYDSLEQIEETFCTFMGLVGEDGTVIVCGEDPRLVELARSC----GRT 243

Query: 247 IYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIV 303
           ++++G+    D  L     + +  S   V L   S   V   +  G H   N    L   
Sbjct: 244 VFTYGEGDGMDVCLNPAATRHAFGSDFTVTLPDGSKREVSIKNNPGRHNMLNATAALTAA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L  + + A +ALS F   EG  +R+         TL+D+ Y  +P  ++A ++     
Sbjct: 304 YVLGLNTERAAEALSTF---EGARRRFTQVGEVRGVTLVDD-YGHHPTEVRATLAAAKSL 359

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  D  +    + +       ++ ++    + + G     L
Sbjct: 360 DFQHVDVVFQPHRYSRLQALCDDFVDAFADADT-----VILVDVFPAGEMPIPGVTSKML 414

Query: 415 KD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            D   A      V+Y      L   I      GD+++   +   
Sbjct: 415 ADKIRAAHPGKSVYYVSDHAALMARIDDVAQAGDLLITMGAGDI 458


>gi|291279000|ref|YP_003495835.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
 gi|290753702|dbj|BAI80079.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
          Length = 460

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 130/379 (34%), Gaps = 33/379 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + S     IPV    ++L  L +L            I ++GS GKTTT  M
Sbjct: 72  SAIKEDNPELISAKDRHIPVIKRGEMLAELTRL---------KRSITVSGSHGKTTTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +       K         +  I +   L     +   G  +  +    E      L+ P 
Sbjct: 123 IAHIFIEAK--------LDPTIVIGGRLNSSGQNAVLGKGDYFICESDESDRSFLLLYPT 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   HL  +  +E+I SA  E    +   G   L  ++     +         K
Sbjct: 175 INVVTNIDLEHLDVYQDLEDIKSAFIEYCNKIPFYGLNLLCIENQNVTDIIPSIE----K 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
              ++G  K+AD +     Q    S  +V    + +  +H +  G H   N L  +G+  
Sbjct: 231 RFQTYGFKKSADIRADNIIQDGYISTFDVYYFSEKLGRIHLNTPGIHNVLNSLGAIGVAI 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D   +AL  F       +R      +    ++ + Y  +P  +KA +  +  + 
Sbjct: 291 ECGITFDVIKEALKNFQGV----ERRLSIRYKDERRVVIDDYGHHPTEIKATLQSVRSLY 346

Query: 365 PHGEGRRIAVLGDMCE----MGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALP 419
           P  +   I            + E + SF+  D+  V  +Y  S   + G     L + + 
Sbjct: 347 PDYKIVTIFQPHRYTRTKALLNEFASSFYDTDILIVTDIYAASEAPIEGVSSDILVEKIK 406

Query: 420 --RSIHVHYSETMDGLFLF 436
                 V+Y    D +F  
Sbjct: 407 MQGLKDVYYIADFDKIFDL 425


>gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
 gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
          Length = 326

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 120/311 (38%), Gaps = 15/311 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFV----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           L T   +   ++   I    Q  +    +  S+D   +   E F      ++D H  I  
Sbjct: 2   LLTADLIRSILKAELICEY-QAKIDISRSKFSMDYEKVGKGEIFVTADAKNHDTHHLIET 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   GA  ++   D       + IP+  VDD L A+ KLA       +  +I ITGS GK
Sbjct: 61  AYLNGALAIITKKDTACP--KVPIPIIKVDDPLRAMEKLAAILIRNYQPIVIGITGSSGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TK ++   L +  KT        +  G  L +        F + E+  +H G I    
Sbjct: 119 TLTKNLIVTLLKNYGKTCYNEDGAGDFTGFTLGILNADFPCKFLVLEVDTTHSGNIDLFN 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + VIT I      +    E     KA+IF+         LN+D  + ELL  ++
Sbjct: 179 QITLPKVGVITDIRFHPARSIDLRESTVREKAKIFQN---GCVAVLNFDTPYTELLLQEA 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 TI SFG ++N D +L         +   V++              H+   +L T
Sbjct: 236 RK-NKATIISFGGNENCDVRL----LSHSNNTAVVKIGRSQKTYKLSDHNQHLKCAVLAT 290

Query: 300 LGIVSILTADV 310
           +G++  L   V
Sbjct: 291 IGVMKALKLKV 301


>gi|301063251|ref|ZP_07203800.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
 gi|300442679|gb|EFK06895.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
          Length = 457

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 127/402 (31%), Gaps = 38/402 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      +       IPV    ++L  L +L            +AI G+ GKTTT  M
Sbjct: 74  SAVGFQNPELQEAKDRYIPVIPRAEMLAELMRLKYG---------VAIAGAHGKTTTTSM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         +      I            +  G   +  +   +  FL   + P 
Sbjct: 125 VASILMRGGLDPTVVIGGRLDIWGGSN-----AKLGQGDVLVAETDESDGSFLA--LSPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I   H+ ++  +  I     +    +   G   L  D+   + +  +      K
Sbjct: 178 IAVVTNIDHEHMDHYGSMAAIRRTFVDFINKIPFYGIAILCQDNEEIQGIIPQLK----K 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD + +  +     + +EV  +  SM  +     G H A N L    +  
Sbjct: 234 RYITYGMSTQADLRGKDLRNEKWGTSLEVIYRNNSMGRISVGMPGAHNALNALAATAVGL 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  ++              G  +R +    +    ++D+ Y  +P  + A    L  + 
Sbjct: 294 ELDLEMGVI---GEGLTALGGLARRLQIKGEKNGIMVMDD-YGHHPTEIMA---TLKTVK 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHI--------DLAEVLSLYNISHVWLSGFHVLALKD 416
                +R+ V+                       D+  V  +Y      +   +   L  
Sbjct: 347 TCWSEKRLVVVFQPHRYTRTQSLLDRFVISFNDADVLLVTPIYPAGEDPIENINSENLVR 406

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +    H  V +   +  +   +   L  GD+V+   + +  
Sbjct: 407 EIKEHGHKEVIFCNDLKAVVPTLLKLLTPGDLVLTLGAGNVH 448


>gi|317014152|gb|ADU81588.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori
           Gambia94/24]
          Length = 493

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 135/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +    + T  S          +R  +   + +  E+ L         
Sbjct: 287 -----SVEKIKPYAPKDSLLTDVSS--------LVRNIQSTLKGTSFEMLLDSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLDLNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   +GR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLHQGRKVIVTPGLVESNTES---NEALAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|258404875|ref|YP_003197617.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797102|gb|ACV68039.1| UDP-N-acetylmuramate/alanine ligase [Desulfohalobium retbaense DSM
           5692]
          Length = 454

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 139/415 (33%), Gaps = 46/415 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +      S+PV    ++L  L +L          T IA+ G+ GKTTT   
Sbjct: 72  SAVADDNPELIQAREDSVPVIPRAEMLAELMRL---------KTGIAVGGTHGKTTTTSF 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L             I      IG  L        +  G F +  +   +  FL  L  P 
Sbjct: 123 LGTIFKEAGLDPTVI------IGGRLNSYGSNAFLGQGEFLIAEADESDGTFLCLL--PI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +   H+  ++    I  +       +   G   +  DD   + L  +      +
Sbjct: 175 MTVVTNVDADHMDFYADQTAIDDSFVHFMNQIPFYGLNVVCGDDPGVQRLLPRIK----R 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            + ++G  ++ D +       +  S   +  Q + + E+     G H   N L    +  
Sbjct: 231 PVVTYGLEEDNDVRAE-ILGFNGGSHFRLIYQERPIGELHLKHPGRHNVLNALAAAALAL 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
                 D  I  L  F    G G+R+     +    ++D+ Y  +P  + A ++   +  
Sbjct: 290 EAGVSEDAVIHGLDCFG---GVGRRFETKGERDGVLVVDD-YGHHPTEIAATLTTARETY 345

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+ G  C   E +     DL  +  +Y  S   + G     L
Sbjct: 346 PERRLVVLFQPHRFTRTQALFGQFCRAFEEA-----DLLLLTEIYPASETPIPGVTGANL 400

Query: 415 KDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + +     V +    +     +   L  GD+++   + S   +++    L+ 
Sbjct: 401 AQGIRQVSQTRVEFFNDFEAAQEALPGMLRPGDLLITLGAGSV--WKVGEHFLQH 453


>gi|226360229|ref|YP_002778007.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus opacus B4]
 gi|254766018|sp|C1AU54|MURC_RHOOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226238714|dbj|BAH49062.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus opacus B4]
          Length = 503

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 149/440 (33%), Gaps = 65/440 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV     VL +L +             + ++G+ GKT+T  M
Sbjct: 80  AAIPKDNPELVEAARRGIPVILRPAVLASLMQGHR---------TLLVSGTHGKTSTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            ++    V   L     +   G  ++ ++   E         P+
Sbjct: 131 LVVALQHCG--------FDPSFAVGGELNEAGTNAHHGSGDVFVAEADESDGSLLQYDPN 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +   HL  F   E       +    L   G +    DD     L  +  A G+ 
Sbjct: 183 VVVVTNVEADHLDYFGSPEAYIQVFDDFAARLSHGGLLVACLDDPGSAALAQRVAARGLP 242

Query: 246 --TIYSFGKSKNAD------------FQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIG 289
              +  +G +++AD             +L  ++       ++ QL G+        +  G
Sbjct: 243 GVRVLGYGSAEDADGAFAPIDGVEVGARLLSFEARDVGGVLQFQLAGEQAPRTIRMNVPG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HMA N L  L       ADVD  ++ ++ F    G  +R++    +    + D+ Y  +
Sbjct: 303 RHMALNALAALLAAREAGADVDEILEGIAGFG---GVHRRFQFTGREHGVRVFDD-YAHH 358

Query: 350 PASMKAAISVLSQI-------------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
           P  ++A +   + +              P   G+ I V      +   + +F  +     
Sbjct: 359 PTEVRAVLGAAADLVSQPHEADRRESEEPVRSGKVIVVF--QPHLYSRTATFAEEFGHAL 416

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L G     +  AL  S  VHY   +      + +    GDVV
Sbjct: 417 DLADEVMVLDVYGAREEPLPGVSGALV--ALSVSKPVHYQPDLSQAPRQVAALASPGDVV 474

Query: 448 VVKSSNSCGF--YRLINLLL 465
           +   +        ++++ L 
Sbjct: 475 ITMGAGDVTMLGNQILDALR 494


>gi|288574852|ref|ZP_06393209.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570593|gb|EFC92150.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 482

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 138/371 (37%), Gaps = 33/371 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I + G+ GKTTT  M+ + LS    +    IG     IG    L   P      + EL  
Sbjct: 116 IGVAGTHGKTTTSSMIGLILSGAGLEPTVAIGGELCDIGCNARLGSGP----HMVAELDE 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S   +  FL     P I+VIT +   H++++   + + +      + L K G   L  +D
Sbjct: 172 S---DGSFLC--FHPTISVITNVDWDHVNHYPDFDSVLNTFESFSKNLRKGGLSVLCGED 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSM-EVVHHG 287
              + L       G K   ++G     D+     +          V+  G+S+  +    
Sbjct: 227 GGVQSLLKMMEKDGPKAKVTYGWGDRWDWGATDIEYNHGGGVSFSVRKHGRSIGRIELSV 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L +  +   L+   D   + L  F   +G  +R +         + D+ Y 
Sbjct: 287 SGDHNVLNALASCIVADTLSVPFDVIKRTLRQF---KGAKRRLQFKGGVEHIDVYDD-YG 342

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------L 398
            +P  ++A +  +SQI P    R+I V          + +   D AEVL+         +
Sbjct: 343 HHPKEVEATLKAISQIFPE---RKILVAFQPHRFTRTA-AMAEDFAEVLTYADKVVVLPI 398

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           Y      + G     + D L    H  +   +        + S + +GDV++   +    
Sbjct: 399 YPADEPPIDGVTSHMIGDHLSMKKHPSFFVADRKKDAIDKVMSLVEEGDVILTLGAGDIA 458

Query: 457 FYRLINLLLEE 467
              L ++L++E
Sbjct: 459 --DLGDILVKE 467


>gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
          Length = 509

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/478 (16%), Positives = 153/478 (32%), Gaps = 46/478 (9%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   DL++                FV+GI+  ++S+   + F A +G    G +F+    
Sbjct: 8   YRLSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQV- 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            +    V+ +      + S  +P     +   D     L  LA          I  ITG+
Sbjct: 67  -QSCAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMP-----------VDVDF 162
            GKT+T  +    L  +  +      IGS  +     LT   +               DF
Sbjct: 126 NGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADF 185

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E     +   R L  +V   +A  T + P H+     +E    AK  +F   +++ +
Sbjct: 186 FALEASSHAINRGR-LGDIV-LEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN-KRSNS 242

Query: 223 IFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +N D  +   L  ++   A  I     +G      +Q    +      +  +   G  
Sbjct: 243 AVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPSGYR 302

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E     +G   A N  M + I+  L  D++     L      +            G   
Sbjct: 303 VESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGNSP 362

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLY 399
            +   +     +++ A+     I+    GR I ++  D    G+   S    L ++   Y
Sbjct: 363 RVIVDHGHTVDAVETALVAAKSIT---RGRLITIINAD----GQRDPSKRKHLGQLCGAY 415

Query: 400 NISHVWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448
           +       G     +   ++  +   +      V    +M    L         D V+
Sbjct: 416 SDKLFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVL 473


>gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
 gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
          Length = 526

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 151/457 (33%), Gaps = 40/457 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  +AP + F A+ G    G  +   AV  GA  VV +       G L +PV  
Sbjct: 39  TGVTVASTDVAPGDLFVAVPGMRVHGATYAAQAVDAGAVAVVTDAAGAELAGDLGVPVLV 98

Query: 88  VDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D       LA          ++ +  TG+ GKTTT   +  AL +  +T A +G+   
Sbjct: 99  APDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGKTTTTYFVDAALRAAHRTTAVLGTVEL 158

Query: 146 HIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +G                  +  +  +   G   + +S           +   +   T 
Sbjct: 159 RVGDEAVESPRTTVEAPALQGILALARERGAGAVAMEVSSHALALGRVRGLTFDVVGFTN 218

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-- 249
           +   HL     +E     KA +F   +    + +  DD +   L A +  + ++T+ +  
Sbjct: 219 LQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVV-VDDEWGRRLAA-TSPVPVETVATHV 276

Query: 250 ---FGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               G   +              S   ++   G          G     N  + + +   
Sbjct: 277 GDPHGADADWAVVAADIGLDGVGSTFTLRGPDGTEHAAASPLPGLVNVSNAALAIVLAHT 336

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D+ TA+ A++  H   GR +R           L    Y   P ++  A+  +  I+P
Sbjct: 337 AGVDLATAVDAVAHAHEIPGRMER--VVERGDGLPLCLVDYAHTPDALVLALEAVRPITP 394

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKD 416
              GR I V G   +  +  +     +A  L+           +     +    +  ++ 
Sbjct: 395 ---GRLILVFGSDGDRDQGKRPIMGQIAARLADVLVVTDENPRSEDPAVIRAAILEGVRA 451

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             P    VH + +         +   D D V+V  K 
Sbjct: 452 ERPSGTDVHEATSRAQAIRDALALATDQDTVIVTGKG 488


>gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis 053442]
 gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 053442]
          Length = 445

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 142/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +     R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD+F   +K        + +  F     ADF L +     +Q   ++     
Sbjct: 214 DGVQVLNADDAFCRAMK-----RAGREVKWFSLEYEADFWLERETGRLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 IATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAG 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G   L + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDALQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
          Length = 462

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 149/419 (35%), Gaps = 45/419 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV++ +      L       IPV    D L AL           
Sbjct: 60  GH--AAGHLADDASCVVVSSAIREDNPELRRAAELGIPVVHRSDALAALMD--------- 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML ++L+++ +             +   L     +   G  E
Sbjct: 109 GLRPIAVAGTHGKTTTTSMLAVSLAALGRR--------PSYAIGGDLDAPGSNALHGEGE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E     H   P +A+I  +   H +N++ +EEI  +       +   GT+ ++
Sbjct: 161 IFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMEEIHQSFETFVGRIVPGGTLVIS 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      L  +    G     ++G++++AD ++        +S + V+L G  +     
Sbjct: 221 ADHEGARELTRRLD--GAVRTVTYGEAEDADVRVLSVVPQGLKSEVTVELDGAPLTFTVS 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L   + L         AL+ +   +   +R +         ++ +SY
Sbjct: 279 VPGRHYAHNAVAALAAGAALGVPPAELAPALAAYTGVK---RRLQLKGEAAGVQVV-DSY 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +   +      RI V+     +   ++    ++   L+L + S V  
Sbjct: 335 AHHPTEMTADLEAMRAAAGDS---RILVVFQ-PHLFSRTRELGKEMGRALALADASLVLD 390

Query: 405 -------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   + G     + +A       V        +   +      GD+V+   +   
Sbjct: 391 VYPAREDPIPGVTSELIIEAARAAGADVSAVHDEAEVPEAVAGMAKPGDLVLTMGAGDV 449


>gi|297170215|gb|ADI21253.1| UDP-N-acetylmuramate-alanine ligase [uncultured myxobacterium
           HF0010_08B07]
          Length = 462

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 142/405 (35%), Gaps = 42/405 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   + +  SL+I +    ++L +L +             IA+ GS GKTTT  +
Sbjct: 73  SAVNESNPEMKAAKSLNITLIPRAEMLSSLMR---------GFQSIAVAGSHGKTTTTSL 123

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +      + +  T+   G              +    ++ I E   S    +      + 
Sbjct: 124 IADIFVKAKLDPTFIIGGKILGQENKS-----ILGTGEYLIVEADESDASFLH-----LN 173

Query: 184 PHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P I+V+T I   HL  +   +E++ S   +  E L   G+  +  D    +    K    
Sbjct: 174 PEISVVTNIDNDHLDFYGNNLEKLDSTFLQFLENLPFYGSAIMCIDSDRSK----KVFES 229

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300
             +   S+G +K AD+ ++  KQ S     +V     GK +       G H   N     
Sbjct: 230 LSRPKISYGFNKKADYFIKDLKQQSSFQKFKVVRSSTGKEITFELTLSGKHNTLNATAAF 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +      ++    ++   F     R +       +    ++ + Y  +P  +KA I  L
Sbjct: 290 IVAQKAGINIKFIKESFKNFGGVSRRLEYKANIKIKDKSAILIDDYGHHPTELKATIEAL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA---- 413
              +P    R   V          S     +  E L   +   I  ++ +G   L     
Sbjct: 350 RSTNPSK--RICMVF--QPHRYSRSTLLFKEFVECLRGVDTIIILDIYSAGEQNLHNISS 405

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +   + +  +  +++ +  +   ++S + D +++V + + + 
Sbjct: 406 YDFVNALIEKKKNAFFAKNLKEICKILESEIKDDEILVTQGAGNI 450


>gi|254556389|ref|YP_003062806.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           JDM1]
 gi|300767141|ref|ZP_07077053.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180361|ref|YP_003924489.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254045316|gb|ACT62109.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           JDM1]
 gi|300494960|gb|EFK30116.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045852|gb|ADN98395.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 436

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 136/378 (35%), Gaps = 54/378 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     + +PV+   + LG L +           T I + G+ GKT+T  +L+  L
Sbjct: 76  DHPEIKKAREMGLPVYRYHEFLGKLME---------GFTSIGVAGTHGKTSTTGLLSHVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S I  T   IG             +   D  F +FE       E R       P  A++T
Sbjct: 127 SHIAPTSYLIGDG---------TGKGTPDARFFVFEA-----DEYRRHFVAYHPDYAIMT 172

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H   +  + ++ SA  +    ++K   IF   DD     L   +       IY +
Sbjct: 173 NVDFDHPDYYKDLADVQSAFQQFGNQVKKG--IFAWGDDESLRHLDVDT------PIYYY 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G +   DFQ    K+ ++ S  EV+   +S+ E      G H   N    + +      +
Sbjct: 225 GTNDRDDFQAVNIKRTTKGSSFEVKYHDESLGEFEIPLFGEHNVLNSTAVIAVSYFEKVN 284

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D   + L  F   + R   ++     G   +ID+ Y  +P+ +KA +    Q  P  E 
Sbjct: 285 LDEIRRELLDFSGVKRRFSEHQV----GDMVMIDD-YAHHPSEIKATLDAARQKYPDKE- 338

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDAL 418
             +AV          +++     A   SL    HV+L+                 L   L
Sbjct: 339 -ILAVF--QPHTFSRTKALMDGFA--ASLSKADHVFLTNIFSSAREKSGDVSSKDLAAKL 393

Query: 419 PRSIHVHYSETMDGLFLF 436
           P    +  ++ M  L  +
Sbjct: 394 PNGGEIITTDDMSALTAY 411


>gi|297379937|gb|ADI34824.1| Hypothetical protein HPV225_0748 [Helicobacter pylori v225d]
          Length = 493

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 136/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVWELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|27904698|ref|NP_777824.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29427599|sp|P59418|MURC_BUCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27904095|gb|AAO26929.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 486

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 154/409 (37%), Gaps = 44/409 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +     L+IPV    +++  + +             IAI+G+ GKT+T  +
Sbjct: 86  SAISCNNPEIIKAKKLNIPVISRAEMIAEIIRYKYN---------IAISGTHGKTSTTAI 136

Query: 126 LTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +         +   I G Y   I   + + + P    + I E   S    +      ++P
Sbjct: 137 IFSIFEDSNLSPTLINGGYLKSINSNIKIGKNPF---YCIVEADESDASFLH-----LKP 188

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              ++T I   H+  +      +  A  +    L   GT  +  D+   + +        
Sbjct: 189 ITIILTNIEKDHIETYNGSFHNLKLAFIKFIHNLPFYGTAIMCIDNHAVQTILPYIK--- 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + I ++G S NAD ++ ++ Q    S   V ++   ++ V  +  G H A N    + +
Sbjct: 246 -RNIITYGFSSNADVRIDRYVQKKFTSRFIVIRVNKPTLNVTLNLPGRHNALNATAAICV 304

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAA 356
            +    D    I++L  F   + R +  +       +  +    LI++ Y  +P  +   
Sbjct: 305 ATQENIDDKNIIQSLKNFQGVQRRFELSKTFTINSKSHRKKEIMLIND-YGHHPTEI--- 360

Query: 357 ISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWLSG 408
           +  +         +++ ++            +   S++  ++D   +L +Y  +   + G
Sbjct: 361 LESIHTARFGWPKKKLLMIFQPHRYTRTKNFLFSFSKTLSNVDELFILEVYAANEAIIPG 420

Query: 409 FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               +L   + ++    V     ++ LFL I S L D ++++V+ + + 
Sbjct: 421 ADSTSLYKTIKKNKKNFVTLILDLNKLFLNIMSKLSDSNLILVQGAGNV 469


>gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 481

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 163/480 (33%), Gaps = 71/480 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++    G           + IS DSR    +  FF +KG H+   +F+  AV  G 
Sbjct: 16  NFREIIA--DGDYYFNYQDLTFDKISYDSRKADSRTLFF-VKGEHFK-REFLEKAVAAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
           G  +  TD+      + IPV  V+D+  A++   +        K  ++A TG+ GKTT  
Sbjct: 72  GFYLSETDL-----EVGIPVLLVNDIKQAMSLIAMEFYGHPEQKLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 L    K  A + + N  +               L L  M            I E
Sbjct: 127 YFAYNILKQSHK-PALLSTMNTTLDGETFFKSTLTTPESLDLFEMMAQAVANARTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMDN---SRAVV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F++L  +    G      +G                +      + QGK +   
Sbjct: 241 VNSGMDHFQVLAEQVANYGHD---FYGPDSAN--------SILQSQAFSFEAQGKLAGSY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N +        L A ++      +        G+      + G    +D
Sbjct: 290 DIQLIGRFNQENAIAAGLACLRLGASLEDI---QAGIAQTRVPGRMEVLTQSNGAKVFVD 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+   +SV+ +   H +G+ + VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLAKLLSVVQE---HQKGQTVLVLGA---TGNKGESRRKDFGLLLNQHPEIK 398

Query: 404 VWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV--KSS 452
           V L+         +A+   +   I     + +      I+ ++     +GD V++  K +
Sbjct: 399 VILTADDPNREDPIAIAKEIASYISFE-VDMIADREEAIKKAISLTSAEGDAVILAGKGA 457


>gi|218439183|ref|YP_002377512.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7424]
 gi|254765996|sp|B7KHE9|MURC_CYAP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218171911|gb|ACK70644.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7424]
          Length = 495

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 143/409 (34%), Gaps = 42/409 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N     +   L  P+F   DVL AL K             I + G+ GKTTT  ++
Sbjct: 114 AIADNNSEYQAAKELGYPIFHRSDVLAALIKDYY---------SIGVAGTHGKTTTSSLI 164

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G  +  I V   +     +   G  +  ++ + E         P I
Sbjct: 165 GYML--------LGGGLDPTIIVGGEVDAWDGNARLGQGQFLVAEVDESDGSLTKHSPRI 216

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I   H  ++  ++E+        +  E   T+    D                + 
Sbjct: 217 GIITNIELDHPDHYQTLDEVVKTFQIFEQQCE---TLIACIDCKTVRT------HFKPQI 267

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            YS    + AD+ ++     ++ S  EV  +G+ + ++    +G H   N L  + +   
Sbjct: 268 TYSLDPDREADYTVKNVTYKTDGSMAEVWEKGQYLGQMHISLLGQHNISNALAAVAVGRT 327

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +     ++ F    G  +R+         T ID+ Y  +P+ ++  +        
Sbjct: 328 LGLDFEVIASGIATF---IGAKRRFEHKGYSQGITFIDD-YAHHPSEVRCTLEAARLRLD 383

Query: 366 HGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               RR+  +            M E + SF   D+  V  +Y+   V +       + DA
Sbjct: 384 QDRYRRVVAIFQPHRYSRTATFMDEFATSFDDADVVIVTDIYSAGEVNIGQISGQQVADA 443

Query: 418 LPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + R    V Y  ++  L  F+   L  GD+ +   +      ++I  L+
Sbjct: 444 ISRHHQQVFYHPSLKSLGSFLSQILEPGDLALFLGAG--NLNQIIPELI 490


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 29/235 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------------V 75
             +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 22  KQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAK 81

Query: 76  ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            ++   +  V  V ++   L+++  A  A    K T++ +TG+ GKTT+ ++L    + +
Sbjct: 82  YNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGM-------SHLGEIRFLT 179
               A +G+  N +   +  A         +        E+G        S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +   +AV T ++  HL     +EE A AK  +F  L+ T    LN DD     
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELD-TKAQVLNADDEVGRE 255


>gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
 gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
          Length = 486

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 139/346 (40%), Gaps = 26/346 (7%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
                I+AITGS GKT+ K  L   L S    Y+ +GS N  +G+   + + +P +    
Sbjct: 158 MKNLKILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLSQDINQNLPENTTLY 217

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  ++ L+  H AVIT +   H+  F  ++ +   KAE+ E        
Sbjct: 218 IAEAGARQPGDIAAISQLLNHHYAVITEVGAQHIEYFKTLDNVIKTKAELLESSRLE-HA 276

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F +++++  EL+  K          +F        Q+R+ +   E +  E+ L  +    
Sbjct: 277 FCHHNEALEELISQKDK-------ITFYPG-----QVRRVQATLEGTSFELLLGEQWARF 324

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G    +N+ + + +       +D   ++++  +P   R +            +ID
Sbjct: 325 ESKILGAFNVENITLAVMVGFYFGIPIDQLQRSVAKLNPVPHRLQVLHL----NDKVIID 380

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   M  A+    ++S    GR+I V   + E  E S   +  L + +       
Sbjct: 381 DGFNGNLKGMLEAV----RLSSLYVGRKIIVTPGLVESDEES---NTTLGKAIDQV-FDI 432

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L+G    A    +       + +    L   +QS  +  D+++ 
Sbjct: 433 AILTGELNAATLGRVINRAQKIFLKDKSQLEQLLQSVTLAKDLILF 478


>gi|312109889|ref|YP_003988205.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|311214990|gb|ADP73594.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 434

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 156/454 (34%), Gaps = 82/454 (18%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG  +         + +  +  +  +  +I P     A  G  + D H+ I 
Sbjct: 21  LHDMNYTVQGSDVEKRFFTQKALEERGIPILPFNKENIKPGYTVIA--GNAFPDTHEEIQ 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + G                  +PV      LG   +         K T IA+ GS G
Sbjct: 79  AAYELG------------------VPVIRYHRFLGEFLQ---------KFTSIAVAGSHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG             +      + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHSTSYLIGDG---------TGKGIEGSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I+++ SA  E+   ++K   I    DD + + +KAK
Sbjct: 158 FLSYFPDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQVKKG--IIACGDDEYLQKIKAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                   +  +G   + DFQ R   + +E +  +V ++            G H   N L
Sbjct: 216 V------PVLFYGFGDDNDFQARNVVKTTEGTSFDVFVRNTFFASFEIPRFGDHNVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV    + L  F   +    R       G   LID+ Y  +P  + A I
Sbjct: 270 AVIALCHYEEIDVHIIQERLKTFQGVK----RRFSEKVLGNQILIDD-YAHHPREIIATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               Q  P  E   +A+          +Q+F  + AE L       V+L         D 
Sbjct: 325 DAARQKYPGRE--IVAIF--QPHTYTRTQAFLREFAESLQQ--ADQVYLC--------DI 370

Query: 418 LPRSIHVHYSETMDGLFLFIQSS--LVDGDV-VV 448
              +   H   ++  L   I +S  + + D  V+
Sbjct: 371 FGSAREHHGKLSIQDLQAQIPNSRLIQENDTSVL 404


>gi|317180502|dbj|BAJ58288.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F32]
          Length = 493

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 135/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAVLIAKHLGLETERIKRLVWELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|172040884|ref|YP_001800598.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium urealyticum
           DSM 7109]
 gi|229486485|sp|B1VHC3|MURC_CORU7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171852188|emb|CAQ05164.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium urealyticum
           DSM 7109]
          Length = 487

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 156/462 (33%), Gaps = 70/462 (15%)

Query: 33  DSRSIAPQEAFFAIKG---PHYDGHDFILHAVQKGA----------GLVVVNTDMVASIG 79
           DSRS+       A++        GHD     V  GA            +  +   + +  
Sbjct: 44  DSRSV------LALRAAGAEVAIGHD--AANVTGGAELPTVVVTSFAAIPKDNPELTAAR 95

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+    DVL  L     A  L          G+ GKT+T  M  + + +       
Sbjct: 96  EAGIPIVRRSDVLAELMSDRRAFLL---------AGTHGKTSTTSMAVVGVQAAG----- 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
               +    +   L R   +   G  E+ ++   E         P +AVIT I P HL  
Sbjct: 142 ---LDPSFAIGGQLNRAGTNAHHGTGEIFIAEADESDGSFLSYSPEVAVITNIEPDHLDY 198

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNAD- 257
           +   E   +   E    +   G +    DD     L A+  A G   T+  +G    AD 
Sbjct: 199 YGTEEAYVAIFDEFATKVTPGGYLVCCLDDPGAAALAARVRAAGTAPTVLGYGSRAAADQ 258

Query: 258 -------FQLRKWKQCSEQS--WMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSI 305
                    + +    +  +   +   L G+     ++     G HM  N +  +   ++
Sbjct: 259 HPDIPAAAIIEEMIPDARGTAAKVRFNLPGQEERYEDIRVAIPGAHMTLNGVAAITGGAL 318

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-S 364
           L AD++  I  ++ F   +G  +R+      G   + D+ Y  +P  + A ++   ++  
Sbjct: 319 LGADLEKVIAGVADF---DGVRRRFEYHGEAGGVRVYDD-YAHHPTEVTAVLTAAKELVE 374

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALK 415
               GR IAV      +   + +F  + A          +L ++      + G     + 
Sbjct: 375 ATDAGRIIAVF--QPHLYSRTMNFASEFARALSLADEVVLLDIFGAREQPVEGVDSRIIG 432

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           + L  +   H+      +   +      GDVV+   + +   
Sbjct: 433 EKL--TCEWHFQPDFSAVAEQVIGIAKPGDVVLTIGAGTVTM 472


>gi|328957052|ref|YP_004374438.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
 gi|328673376|gb|AEB29422.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
          Length = 443

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 119/335 (35%), Gaps = 47/335 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   L + V    D L              + T +A+TGS GKT+T  +
Sbjct: 71  NAFPDTHEEIVAANELGLTVIRYHDFLAQFI---------GQFTSVAVTGSHGKTSTTGL 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS +K T   IG    H            D DF I E       E R      +P 
Sbjct: 122 LAHVLSPLKNTSYLIGDGTGHGV---------PDADFFILEA-----CEYRRHFLAYQPD 167

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   +S + ++  A   +   ++K   I    DD   + L+A        
Sbjct: 168 YAIMTNIDFDHPDYYSSLSDVFDAFQSMAVQVKK--AIVACGDDEQLQKLQANV------ 219

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
            I  +G   + DFQ +   + +  S  +V ++ +          G H   N L  + I  
Sbjct: 220 PILYYGFEDHNDFQAKNMTRSTTGSTFDVYVRDEFYGHFEIPTFGKHNILNALSVIAICQ 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
               D +  ++ L  F   + R    +         +I + Y  +P+ ++A I    Q  
Sbjct: 280 YENIDKEGVMENLKTFKGVKRRFSEKQMLDM-----VIIDDYAHHPSEIRATIDAARQKY 334

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     PH   R +A+L D  E   L+ S +
Sbjct: 335 PNKEIIAIFQPHTFTRTVALLSDFAESLNLADSIY 369


>gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           parainfluenzae T3T1]
          Length = 437

 Score =  143 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 137/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              II ITGS GK+T   ++     +        G+          L+ +  D D  + E
Sbjct: 105 TKPIIGITGSNGKSTVTTLVYEMAKAAGIKVGMGGNIGIP-----ALSLLNEDCDLYVLE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+   E   T  +N
Sbjct: 160 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAE---TAVVN 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L         K + SF +++ AD+ L+   +  +Q  M   EV L       
Sbjct: 213 LED----KLTFGEGENQAKKVVSFAENQ-ADYWLK--TENGKQYLMAKEEVILPCDEAT- 264

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  +++    AL  F   +G   R++ A        I+
Sbjct: 265 ---LVGRHNYMNILAATALAQAVGINLEAIRTALRQF---KGLDHRFQLAHQANGVRWIN 318

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG    +LG   +  + S     +LA++++  +IS 
Sbjct: 319 DSKATNVGSTVAALAGL-----YVEGTLHLLLGGDGKGADFS-----ELADLINQPHIST 368

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   H  ETM+    F++  L  GD+V++
Sbjct: 369 -YCFGRDGKQLAALSSQS---HLFETMEQAISFLRPHLKSGDMVLL 410


>gi|261838027|gb|ACX97793.1| UDP-MurNac-pentapeptide synthetase [Helicobacter pylori 51]
          Length = 493

 Score =  143 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 136/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
 gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
          Length = 468

 Score =  143 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 144/410 (35%), Gaps = 32/410 (7%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A   GA  VVV+T +      L+         L  L++    A       +IA+ G+ 
Sbjct: 65  DAAHVAGASTVVVSTAIREQNPELAA---ARGAGLRVLHRSQALAAAMHGRRVIAVAGTH 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M  +AL +                +   +A +  +  F   E  ++   E   
Sbjct: 122 GKTTTSSMTAVALRAAG--------LRPSWAIGAHVADLGANAGFDAGEWFVAEADESDG 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P +AV+T + P HL ++   E    A  E  + + + GT+    DD     L  
Sbjct: 174 SFMAYHPEVAVVTNVEPDHLDHYGSAEAFHRAFDEFSDTIREGGTLVACADDPGAARLAE 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHG--IGYHMA 293
           +    G   + S+G    AD  L +       +   +   + G   E +      G H A
Sbjct: 234 RRRTRGGA-VLSYGTDPGADVVLSELTPHGTGTTCRIGFPVPGGRREALLELAVPGAHNA 292

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            +            AD +  +  L+ FH   G  +R+     QG   + D+ Y  +P  +
Sbjct: 293 ADAAAAFAAGCAAGADPEQLLAGLADFH---GSARRFDLKGEQGGVRVFDD-YAHHPTEV 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMC---EMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            AA+     ++    GRR+  +          E +++F   L E+  L  ++ V+ +   
Sbjct: 349 AAALGAARDVA---GGRRVLAIFQPHLYSRTREFAEAFCRAL-ELADLACVTDVFGAREQ 404

Query: 411 VL-----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  A      R+  V  +         + +    GDVV+   +   
Sbjct: 405 PEPGITGATITGHARNGRVVSTPATREAVEAVVARAEPGDVVMTVGAGDV 454


>gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Tropheryma whipplei TW08/27]
 gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei TW08/27]
          Length = 509

 Score =  143 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 81/478 (16%), Positives = 153/478 (32%), Gaps = 46/478 (9%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   DL++                FV+GI+  ++S+   + F A +G    G +F+    
Sbjct: 8   YRLSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQV- 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            +    V+ +      + S  +P     +   D     L  LA          I  ITG+
Sbjct: 67  -QSCAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMP-----------VDVDF 162
            GKT+T  +    L  +  +      IGS  +     LT   +               DF
Sbjct: 126 NGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADF 185

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E     +   R L  +V   +A  T + P H+     +E    AK  +F   +++ +
Sbjct: 186 FALEASSHAINRGR-LGDIV-LEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN-KRSNS 242

Query: 223 IFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +N D  +   L  ++   A  I     +G      +Q    +      +  +   G  
Sbjct: 243 AVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPSGYR 302

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E     +G   A N  M + I+  L  D++     L      +            G   
Sbjct: 303 VESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGNSP 362

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLY 399
            +   +     +++ A+     I+    GR I ++  D    G+   S    L ++   Y
Sbjct: 363 RVIVDHGHTVDAVETALVAAKSIT---RGRLITIINAD----GQRDPSKRKHLGQLCGAY 415

Query: 400 NISHVWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448
           +       G     +   ++  +   +      V    +M    L         D V+
Sbjct: 416 SDKLFITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAIDIAKSDDTVL 473


>gi|295399556|ref|ZP_06809538.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294979022|gb|EFG54618.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 434

 Score =  143 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 156/454 (34%), Gaps = 82/454 (18%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG  +         + +  +  +  +  +I P     A  G  + D H+ I 
Sbjct: 21  LHDMNYTVQGSDVEKRFFTQKALEERGIPILPFNKENIKPGYTVIA--GNAFPDTHEEIQ 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + G                  +PV      LG   +         K T IA+ GS G
Sbjct: 79  AAYELG------------------VPVIRYHRFLGEFLQ---------KFTSIAVAGSHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +     T   IG             +      + +FE       E R  
Sbjct: 112 KTSTTGLLAHVMQGAHSTSYLIGDG---------TGKGIEGSKYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ I+++ SA  E+   ++K   I    DD + + +KAK
Sbjct: 158 FLSYFPDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQVKKG--IIACGDDEYLQKIKAK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                   +  +G   + DFQ R   + +E +  +V ++            G H   N L
Sbjct: 216 V------PVLFYGFGDDNDFQARNVVKTTEGTSFDVFVRNTFFASFEIPRFGDHNVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      DV    + L  F   +    R       G   LID+ Y  +P  + A I
Sbjct: 270 AVIALCHYEEIDVHIIQERLKTFQGVK----RRFSEKVLGNQILIDD-YAHHPREIIATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               Q  P  E   +A+          +Q+F  + AE L       V+L         D 
Sbjct: 325 DAARQKYPGRE--IVAIF--QPHTYTRTQAFLREFAESLQQ--ADQVYLC--------DI 370

Query: 418 LPRSIHVHYSETMDGLFLFIQSS--LVDGDV-VV 448
              +   H   ++  L   I SS  + + D  V+
Sbjct: 371 FGSAREHHGKLSIQDLQAQIPSSRLIQENDTSVL 404


>gi|313903534|ref|ZP_07836924.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466087|gb|EFR61611.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 478

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 164/440 (37%), Gaps = 50/440 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GHD        GA LVV NTD+ A    L       IPV+    VL  L     A     
Sbjct: 65  GHD---ARHVAGADLVVYNTDVPADNPELVAARQAGIPVWHRSQVLADLLNHRQA----- 116

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +A+TG+ GKTTT  M  + L +       +           T AR+     + + E
Sbjct: 117 ----VAVTGTHGKTTTTAMTGLVLVAGGLDPTVLVGGEVPEFGAAT-ARLGHG-PWVVAE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
              S    +R+      P IAV+T + P HL ++      +  A       +   G +  
Sbjct: 171 ACESDGTFLRYF-----PRIAVVTNVEPEHLDHYEGDFRRLLDAFRGFLGNVRPGGLVVA 225

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             D      L A   A G   +  +G ++++   + R  +   E +   V  +G+ + EV
Sbjct: 226 CGDHPVVRQLLAGLPA-GRVRVARYGVEAEDCHLRARDVQTGPEGTRFSVWQEGRPLGEV 284

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +      A +AL+ FH   G  +R++   ++    ++D
Sbjct: 285 TLAVPGEHNVLNALAALAVGLEVGVPFGVAAQALAGFH---GAKRRFQVIHDRDGILVVD 341

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  ++A +   ++      GR IAV     +    ++    + A      +   
Sbjct: 342 D-YAHHPTEIRATLRA-ARQRRGAAGRVIAVF--QPQRYSRTRLLMDEFARAFGDADKVI 397

Query: 401 ISHVW-------LSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ ++       + G     L + + +     V    + + L   + +++  GD+V+   
Sbjct: 398 LTEIYAPPGERPIPGVSSAVLAERIAQEEGRPVDLFASREDLIEHLLATVRPGDLVLTMG 457

Query: 452 SNSCGFYRLINLLLEEFPAI 471
           +     + +   L     A+
Sbjct: 458 AGDI--WTVARDLARRLQAV 475


>gi|315586591|gb|ADU40972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 35A]
          Length = 493

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 136/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M6190]
 gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis ES14902]
          Length = 445

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 121/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +      + +         V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTPLRDALVGK------AKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|319408823|emb|CBI82480.1| UDP-N-acetylmuramate--alanine ligase [Bartonella schoenbuchensis
           R1]
          Length = 468

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 141/405 (34%), Gaps = 43/405 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +        +     +P+    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 73  AIKKTNPEYIAAKEKHLPIVRRAEMLAELMRFRR---------TIAVGGTHGKTTTTSMV 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I      I    T ARM    D+ + E   S    ++     +   I
Sbjct: 124 AALLDASNFDPMVIN--GGIINAYGTNARMGCG-DWMVVEADESDGTFLK-----LPADI 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T I   HL  +   + +  A  +  E +   G   +  D    + L ++   +  + 
Sbjct: 176 VVVTNIDSEHLDYYGSFDAVREAFRQFVENMPFYGFAVMCLDHPEVQTLASR---IDDRW 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-------VHHGIGYHMAQNMLMT 299
           + ++G +  AD +        +++  +V ++ +           V    G H   N    
Sbjct: 233 VVTYGANPQADVRFLNLSMEGQKTHFDVLIRSRKTNEETELRNLVLPMSGQHNISNATAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    ++  K L+ F   +    R            I + Y  +P  +KA   V
Sbjct: 293 IAIAHELGISNESIRKGLAEFCGVK----RRFTQTGSWCGVEIFDDYGHHPVEIKA---V 345

Query: 360 LSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVL 412
           LS      +GR IA++       + +L   F       D   +  +Y      ++GF   
Sbjct: 346 LSAARESAKGRVIAIVQPHRYSRLHDLFDDFVTCFNDADTVMIAPVYAAGEEPITGFGSK 405

Query: 413 ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L + +  + H  V    T++ + L I +    GD VV   + S 
Sbjct: 406 ELVEHIQMASHRDVRLVNTLEDIALIIATLAKPGDYVVFLGAGSI 450


>gi|313891497|ref|ZP_07825110.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
 gi|313120074|gb|EFR43253.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
          Length = 463

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 147/404 (36%), Gaps = 48/404 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIK 134
                 IPVF   D+L A+               I + G+ GK+TT  M+      +   
Sbjct: 84  EAKKHKIPVFHRSDLLAAILC---------GGKSICVAGAHGKSTTSAMIGKVFCDAEKH 134

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T    G  +      L    +  + +F I E   S    ++F      P I+VIT I  
Sbjct: 135 PTVVLGGKVDY-----LNGNSIFGNGEFVIAEADESDGSFLKF-----NPFISVITNIED 184

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            HL ++  +E I +A  +     +K  G   L  D+   + +  K   L   +  ++G S
Sbjct: 185 DHLDHYLTVENIKNAFIKFINQTDKINGNTILCIDNEGVKSILPK---LDKNSYITYGTS 241

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            NA+++    +        +V  +   +  V     G H  +N L  L    I   D  T
Sbjct: 242 DNAEYKAINKRYIDSHMMFDVYHKESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKT 301

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             K+L  F+  +   +R++   +      I + Y  +P  + + +    +        R+
Sbjct: 302 IAKSLMEFNGVK---RRFQIKYS--GEVKIVDDYAHHPTEIMSTLKAAKE----CGKHRV 352

Query: 373 AVLGDMCEM-------GELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
                            E + +F + D+  +  +Y+     ++G     L D +      
Sbjct: 353 ICAFQPHRYSRTNLLKYEFANAFDNADIIFITDIYSAGEKPVNGISGKTLVDLIKEKHPT 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + Y + M+ L   I++ +   D+++   + +   YR+   L+
Sbjct: 413 KKITYIKNMEDLPEAIKNEMQKDDMIITMGAGNI--YRVGEDLI 454


>gi|315498794|ref|YP_004087598.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
 gi|315416806|gb|ADU13447.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
          Length = 475

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 142/406 (34%), Gaps = 46/406 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   + +  S  IP+    ++L  L +L            IA+ G+ GKTTT  M+
Sbjct: 83  AVKHDNPEMVAARSRRIPLVRRAEMLAELMRLQF---------SIAVGGTHGKTTTTSMV 133

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +           N  I           D D+ + E   S    +R     ++  +
Sbjct: 134 AALLDAGGLD---PTVVNGGIINAYGTNAKVGDGDWIVVEADESDGSFLR-----LKSTL 185

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++T I   HL ++   E +     +  E +   G   +  D      L AK      + 
Sbjct: 186 AIVTNIDAEHLDHWGDFEAVKKGFVDFVENIPFYGFAAVCVDHPEVLALTAKVEN---RR 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTL 300
           +  +G S  A+ +        E +  +V      +E            G H   N    +
Sbjct: 243 LIPYGVSPQAEVRCTNIDFGPEGATFDVVFSPVGVEPFVWAGLKLPMTGNHNVSNATAAI 302

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L    D   K L  F   +   +R+          +ID+ Y  +P  + A +   
Sbjct: 303 AIARELGVSEDDVRKGLGAFGGVK---RRFTTTGIVNGVRIIDD-YGHHPVEIAAVLKAA 358

Query: 361 SQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
            Q++   +G+ IAV        L D+  M E S  FH  D   V  +Y+   V + G   
Sbjct: 359 RQVT---QGKVIAVVQPHRYTRLRDL--MTEFSTCFHDADKVIVADVYSAGEVPIEGVSK 413

Query: 412 LALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            AL +AL R  H +    +    L   + +    GD+VV   +   
Sbjct: 414 DALVEALHRHGHRNAVGLDGPAALAGLVAAEAKAGDLVVCLGAGDI 459


>gi|13471548|ref|NP_103114.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium loti
           MAFF303099]
 gi|23821883|sp|Q98KB4|MURC_RHILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14022290|dbj|BAB48900.1| UDP-N-acetylmuramate-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 466

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 153/432 (35%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  +   L       +P+    ++L  L +   A
Sbjct: 54  ECFVGH----KAENLGDAEVVVVSTAIKKTNPELKAAREKLLPIVRRAEMLAELMRFRQA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    +AI G+ GKTTT  M+   L +       I      I    T ARM  D +
Sbjct: 110 ---------VAIGGTHGKTTTTSMVATLLEAGGLDPTVIN--GGIINAYGTNARM-GDGE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   IAV+T I P HL ++   +++  A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPADIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  D    + L  +      + + ++G++  AD +    +     S  +V ++ +  
Sbjct: 213 FGVMCTDHPEVQALVGRIE---DRRVITYGENAQADVRFTNHRMAGATSEFDVVIRDRKT 269

Query: 282 EV-------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                         G H   N    + +   L    +   K LS F   +   +R+    
Sbjct: 270 GSQSTISGLRLPMPGRHNVSNATAAIAVAHELGLSGEAIKKGLSSFAGVK---RRFTHTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
           +     + D+ Y  +P  + A +      +   +GR IA+        L D+    E S 
Sbjct: 327 SWNGVDVFDD-YGHHPVEISAVLKAARSAT---KGRVIAIAQPHRFTRLHDLFN--EFSA 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   V  +Y      + G     L   +    H    Y E    +   I+     
Sbjct: 381 CFNDADTVIVAPVYAAGEDPIDGVSSDELVSRIRAGGHRDARYIEGPTAIAPIIRGLAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV   + + 
Sbjct: 441 GDFVVFLGAGNI 452


>gi|116873037|ref|YP_849818.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123461107|sp|A0AJ57|MURC_LISW6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116741915|emb|CAK21039.1| UDP-N-acetylmuramate-alanine ligase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 447

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 150/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                 +  +  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKNAQYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
              DD     L           I  FG  +  +FQ +   + +  +  +V  + + +   
Sbjct: 204 --GDDEELRKLSLDI------PIIYFGFDEENEFQAKNVIKETTGTRFDVYHRDEFLASF 255

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+   K L  F   +    R      +G   L+D
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEAVKKELKTFEGVK----RRFSITEKGNQVLVD 311

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 312 D-YAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +       G V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PGAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
 gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
          Length = 485

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 252 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 538

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 163/488 (33%), Gaps = 48/488 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +   H LL+A+       +    +  +S DSR++A    F  + G   DG  F   A
Sbjct: 32  MTQM--LHSLLRAVGLPVPEGLANPCLAMVSCDSRAVARGCLFLGLPGEQVDGGSFWRQA 89

Query: 61  VQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +  GA   V+     A         V  V + + A      AA  +  ++ +A+ G  G 
Sbjct: 90  LAAGAEAAVIGPAAAALRPPGPKDAVVVVSEPVAAWVGQLAAAFWQQPSSRLALIGVTGT 149

Query: 120 TTTKEMLTIA--LS-SIKKTYACIG---SYNNHIGVPLTLARMPVD-------------V 160
                   +   LS ++ ++ A  G   +   +  VP T      D              
Sbjct: 150 NGKTTTTHLIEHLSVAVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLAQAVEAGA 209

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEK 219
           + G  E+    L + R      R   AV T +   HL   S +E    AKA++F   L +
Sbjct: 210 ELGAMEVSSHALEQQR--VAGCRFAGAVFTNLTQDHLDYHSSMEAYFEAKAQLFAPPLLE 267

Query: 220 TG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQ 275
           +G     +N D  +   L  +      ++  + G  + AD +L   +    S      + 
Sbjct: 268 SGSAKAVVNIDGPWGARLAQRLGDTCWRSSLAEGVLQRADAELTMTELTMSSAGVQGRLI 327

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-AL 334
                       +G     N+L  +G++      +   +KA++ F    GR +R    A 
Sbjct: 328 SPCGEGWFDSPLLGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAA 387

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +      +   Y   P  ++ A++      P        V G     G+  +     +A 
Sbjct: 388 DASQVPTVLVDYAHTPDGLENALTA---SRPFTSKNLCCVFGC---GGDRDRGKRSQMAA 441

Query: 395 VLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +      V ++  +            +   +P+   +              +    GD
Sbjct: 442 IAARL-ADRVVVTSDNPRTEDPQQILVDVVAGIPQGTALTVEVDRAVAIALAIAEAGPGD 500

Query: 446 VVVV--KS 451
           VV+V  K 
Sbjct: 501 VVLVAGKG 508


>gi|319782849|ref|YP_004142325.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168737|gb|ADV12275.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 468

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 153/432 (35%), Gaps = 58/432 (13%)

Query: 49  PHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVA 101
             + GH     A   G A +VVV+T +  S   L       +P+    ++L  L +   A
Sbjct: 54  ECFVGHR----AENLGDAEVVVVSTAIKKSNPELKAAREKLLPIVRRAEMLAELMRFRQA 109

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    +AI G+ GKTTT  M+   L +       I   N  I           D +
Sbjct: 110 ---------VAIGGTHGKTTTTSMVATLLDAGGLDPTVI---NGGIINAYGTNARMGDGE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S    ++     +   IAV+T I P HL ++   +++  A  +  E +   G
Sbjct: 158 WMVVEADESDGTFLK-----LPAEIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
              +  D    + L ++      + + ++G++  AD +    +     S  +V ++ +  
Sbjct: 213 FGVMCTDHPEVQALVSRIE---DRRVITYGENAQADVRFTNHRMSGAISEFDVVIRDRKT 269

Query: 281 ------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                   +     G H   N    + +   L    +   K LS F   +   +R+    
Sbjct: 270 GGQTVIAGLRLPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVK---RRFTHTG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQ 386
           +     + D+ Y  +P  + A +      +   +GR IA+        L D+    E S 
Sbjct: 327 SWDGVEIFDD-YGHHPVEISAVLKAARSAT---QGRVIAIAQPHRFTRLHDLFN--EFST 380

Query: 387 SFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
            F+  D   V  +Y      + G    AL   +    H    Y E    +   ++     
Sbjct: 381 CFNDADTVMVAPVYAAGEEPIDGVSSDALVSRIRAGGHRDARYIEGPAAIAPIVRDLAKP 440

Query: 444 GDVVVVKSSNSC 455
           GD VV   + + 
Sbjct: 441 GDFVVFLGAGNI 452


>gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 482

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 142/393 (36%), Gaps = 42/393 (10%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            FF     + +  D ++      +  + +N     +   L IP+    +VL  L +    
Sbjct: 67  IFFGHCSENVNNADLVVI-----SSAINLNNIEFQAAKRLKIPIMRRAEVLFELMRYKYG 121

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    IAI G+ GKTTT  ML                 N  I     +        
Sbjct: 122 ---------IAIAGTHGKTTTTAMLANIYVEAGLD---PTFINGAIIRSEGVQSRFGCSC 169

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKT 220
           + I E   S    +      + P + +IT I   H+ +  +  E +  A  E    L   
Sbjct: 170 YFIIEADESDKSFL-----WLYPTVEIITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVY 224

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +  DD     + +  +    + I ++G SK+AD  +  + Q  E+S   V ++ K 
Sbjct: 225 GYAVICIDDPAIRSVLSNVN----RKIITYGFSKDADLCILNYHQYREKSKFTVLIKNKK 280

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCAL 334
            +E++ +  GYH   N   ++G+           ++A+  F     R +       +   
Sbjct: 281 KLEIILNIPGYHNVLNATASIGVSIEEGIPDLVILRAMLNFQGTNRRFENLGFYSLKQIN 340

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-H-- 389
            +    +I + Y  +P  + A I+ +    P  + R I V          EL  SF H  
Sbjct: 341 GRVGKVMIVDDYGHHPTELHATIATVRSGWP--DKRLIMVFQPHRFTRTCELYDSFIHVL 398

Query: 390 --IDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +D+  +L++Y      +   +   L DA+ +
Sbjct: 399 STVDVLLILNVYPAGEKPILNINSQTLCDAINK 431


>gi|307637428|gb|ADN79878.1| UDP-N-acetyl muramoyl alanyl-D-glutamyl-2,6-di amino
           pimelate--D-alanyl-D-alanine ligase [Helicobacter pylori
           908]
 gi|325996018|gb|ADZ51423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2018]
 gi|325997613|gb|ADZ49821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2017]
          Length = 493

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 133/348 (38%), Gaps = 34/348 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    S   D    +R  +   + +  E+ +     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLTDVSSLVRNVQSTLKGTSFEMLIDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +    P   R +            +
Sbjct: 330 SFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLHQGRKVIVTPGLVESNTES---NEALAQKIDGV-F 437

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKNPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
 gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
          Length = 470

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 50/411 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++ G          +    +L +P+    ++L  L +L            IAI G+
Sbjct: 80  ISSAIKAG-------NKELDHARALGLPIVRRAEMLAELMRLKSN---------IAIAGT 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L         I      I    + ARM       +         E  
Sbjct: 124 HGKTTTTTLVATLLDHGGIDPTVIN--GGIIHAYGSNARMGTGDWMVV------EADESD 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IAV+T I P H+ ++   + +  A       +   G    N D    + L 
Sbjct: 176 GTFNKLPATIAVVTNIDPEHMEHYGSFDNLKDAFYNFVSNIPFYGLAICNTDHPEVQSLV 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMA 293
            +   +  + I ++G +K AD +    K     ++ ++ LQ ++    +V+    G +  
Sbjct: 236 GR---VDDRRIVTYGFNKQADVRAENLKFKKGCAYFDIALQSENAFIKDVMLPMPGDYNV 292

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L  D      AL  F   +   +R+         T+ID+ Y  +P  +
Sbjct: 293 SNALAAVAVSRHLGMDAKQIRNALLEFKGVK---RRFTHVGEINGVTIIDD-YAHHPVEI 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSGFH 410
            A +S   Q +    G+ IAV            +   D         +  I+ V+ +G  
Sbjct: 349 SAVLSAAKQATS---GKVIAV--HQPHRYSRLDNLFEDFCNSFNDADVVGITDVYSAGEE 403

Query: 411 VL------ALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSN 453
            +      +L   L    H +    +D   L  F   +  +GD++V   + 
Sbjct: 404 PIKNRNRDSLVAGLKARGHRNAFAVVDEADLKKFFLENCKNGDLLVCLGAG 454


>gi|34558797|gb|AAQ75142.1| UDP-MurNac-pentapeptide presynthetase [Alvinella pompejana epibiont
           6C6]
          Length = 475

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 119/344 (34%), Gaps = 34/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +I +T S GKT+ K  +   LS   + YA   S N   GV   +   +   +   + 
Sbjct: 157 DLKVIGVTASYGKTSIKNFIAHLLSKKYRVYATPRSVNTLGGVIRDINENLDEKIQIYVV 216

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G    G+I  +T LV PH A++  I  AH+  F  +E I   K EI            
Sbjct: 217 EMGARERGDILEITQLVNPHYAIVGQIGTAHIEYFKSLENIRDTKMEIIHSKRLIKAFV- 275

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                        ++    + +  FG        +   K         ++ +        
Sbjct: 276 ----------HKSANIKPNEKVEVFGDE------IEDIKADLNG----IEWRVGDRIYRA 315

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+ + + I  +     D   + L        R +R     + G   +ID+S
Sbjct: 316 PILGSFNATNLTVAIKIAKLFGMSDDEVQERLKSLKQTPHRLQRI----DAGGKIIIDDS 371

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A      ++    GR++ +   + E+    +  +  +A+  +      V 
Sbjct: 372 FNGNIDGMIEAFK----LASTHSGRKVLITPALVEV---DRELNEKVAKEANRI-FDLVI 423

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++      +         +   ++   +   +  +   GD+++ 
Sbjct: 424 ITSELNYPIFKEYIDRDKLLKLDSKANMEKILAENTKSGDLILF 467


>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 482

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 153/431 (35%), Gaps = 66/431 (15%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLA 99
           I G    GH     A++  A +VVV+  +  S  S+       IPV G  ++        
Sbjct: 64  IIGE---GHP--PEALEN-ADIVVVSPGVPLSTPSIVSAVYKGIPVIGEIEL-----SWQ 112

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPV 158
           + + ++    II ITG+ GK+TT  +    L    K     G+    +  V L L    +
Sbjct: 113 ILSLIKENVKIIGITGANGKSTTSTLTYEFLKRDGKKVQLAGNIGYPMAEVVLKLLNKEI 172

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D+++ + EL    L  I+      +P  A I  I P H+  +S ++E   AKA+IF+   
Sbjct: 173 DMEYLVLELSSFQLEGIKTF----KPDFAAILNITPDHMDRYSDMKEYIEAKAKIFQNQN 228

Query: 219 KTGTIFLNYDDSF----FELLKAKSHALG-IKTIYSFG----------KSKNADFQLR-- 261
               + LN DD       E L+      G +  ++ F           K+ +  F  R  
Sbjct: 229 GDDYLILNMDDENTISAIEYLRNVYLKKGKLPHVFYFSRVQNVYGAYLKNDSIYFNAREE 288

Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                K+  E + + V              G H  +N++    +         +    + 
Sbjct: 289 VSDDIKKEMENTVLSVST--------FKIKGIHNVENIMAASLLALCSGCKGQSIKDVVQ 340

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    G   R            I++S   N  ++K ++           G  I + G  
Sbjct: 341 QF---PGLPHRMEPVREIDGVIYINDSKGTNVDAVKKSLESF-------PGNVILIAGGR 390

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            + G+ S        + +    +  + L G     + DAL   +  +    M    +  +
Sbjct: 391 DKDGDFSA------LKSIVKEKVKALLLIGEAKHKIADALGDLVPCYLESDMKSAVIKAK 444

Query: 439 SSLVDGDVVVV 449
                GDVV++
Sbjct: 445 EIARAGDVVLL 455


>gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           ATCC 13124]
 gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC
           13124]
          Length = 466

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 123 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 179 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 234 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 289 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 344

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 345 HHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 404

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 405 KDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 457


>gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
 gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
          Length = 457

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 336 HHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 395

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 396 KDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|119511605|ref|ZP_01630712.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
 gi|119463766|gb|EAW44696.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
          Length = 495

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 148/396 (37%), Gaps = 44/396 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYA 138
            L  P+    DVL AL          S    IA+ G+ GKTTT  M+   L         
Sbjct: 115 ELGCPILHRSDVLAALI---------SDYHSIAVAGTHGKTTTSSMIGYMLLEAGLDPTI 165

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +G   +       L +      + + E   S    ++       P I +IT I   H  
Sbjct: 166 IVGGEVDAWEGNARLGQ----SQYLVAEADESDGSLVKH-----APEIGIITNIELDHPD 216

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NA 256
           ++  +EE+ +   +  +  +   T+    D      L   S     K   ++  +   +A
Sbjct: 217 HYETLEEVVNIFQKFADSCK---TLISCIDCYQVRDLLRNSGGDRFKPTITYSLNPETDA 273

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D+        ++ +   V  +GK++ V+    +  H   N L  + +   L  +  T  K
Sbjct: 274 DYTATNIDYRADGTTALVWEKGKALGVLKLRLLSRHNLSNALSAVAVGRALGLEFGTIAK 333

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   EG  +R+      G  T ID+ Y  +P+ ++  ++  +++    E R +A+ 
Sbjct: 334 GIATF---EGARRRFEFRGEVGGITFIDD-YAHHPSEIRVTLAA-ARLQARPEQRVVAIF 388

Query: 376 G------DMCEMGELSQSF-HIDLAEVLSLYNISHVWL---SGFHVLALKDALPRSIHVH 425
                      + E ++SF H DL  +  +Y+     L   SG  + A  +       V 
Sbjct: 389 QPHRYSRTFTFLAEFAESFTHADLVVLTDIYSAGEPNLGQISGEQLAA--EIAKLHPQVL 446

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           Y   +  +  F+  +L  GD+ +   +      ++I
Sbjct: 447 YQPNLPLMSEFLLQTLRPGDLALFLGAG--NLNQVI 480


>gi|16080031|ref|NP_390857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310923|ref|ZP_03592770.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315250|ref|ZP_03597055.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320167|ref|ZP_03601461.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324448|ref|ZP_03605742.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183540|sp|P40778|MURC_BACSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2293216|gb|AAC00294.1| putative UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis]
 gi|2635463|emb|CAB14957.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485412|dbj|BAI86487.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 432

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 165/476 (34%), Gaps = 88/476 (18%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSI----------APQEAFFAIKGP 49
           M+PL     +L        G   + F+    +++ R+I           P     A  G 
Sbjct: 14  MSPL---AQILHDNGYTVQGSDIEKFIFTQTALEKRNITILPFSAENIKPGMTVIA--GN 68

Query: 50  HY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            + D H  I  A+ +G                  IPV      LG   K         K 
Sbjct: 69  AFPDTHPEIEKAMSEG------------------IPVIRYHKFLGDYMK---------KF 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  +L   + + K T   IG             +   + ++ +FE  
Sbjct: 102 TSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDG---------TGQGNENSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R      +P  A++T I   H   FS I+++  A  E+   + K   I    D
Sbjct: 152 ----CEYRRHFLSYQPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQVNKG--IIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHG 287
           D     + A         +  +G  +  DFQ R   + +E +  +V ++    +      
Sbjct: 206 DEHLPKIHANV------PVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPA 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L  + +      D      AL  F   + R    +     G   LID+ Y 
Sbjct: 260 YGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQL----GDQVLIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +K  I    Q  P  E   +AV          +Q F  + AE LS      V+L 
Sbjct: 315 HHPTEIKVTIEAARQKYPDRE--IVAVF--QPHTFTRTQQFLDEFAESLS--GADCVYLC 368

Query: 408 GFHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCG 456
                A ++A   +I      +H ++ ++       S L   D  V++   +    
Sbjct: 369 DIFGSARENAGKLTIGDLQGKIHNAKLIEE---DDTSVLKAHDKAVLIFMGAGDIQ 421


>gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
 gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
          Length = 508

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 154/482 (31%), Gaps = 56/482 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             + +QA+       VP   V G+++  +   P + F A+ G    G  F+  AV  GA 
Sbjct: 18  LAEQVQAVPAPGF-PVPDIRVTGVTLRGQDALPGDLFAALPGSSAHGARFVADAVAAGAV 76

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            V+ +      +G    +PV    D    L  +A            ++ +TG+ GKTTT 
Sbjct: 77  AVLTDAAGAVMLGADPVVPVLVHPDPRAVLGAVASTVYGHPSQHLRVVGVTGTSGKTTTT 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFEL 167
            ++   L +  +    IG+    I      + +                   VD  + E+
Sbjct: 137 YLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVMEV 196

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IFL 225
               L   R     V       T ++  HL     +E+   AKA +F+   +T      +
Sbjct: 197 SSHALTLGR--VDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVV 254

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEV 283
             DD     +  ++     + +      + AD++    +     +  ++ V   G    +
Sbjct: 255 CVDDDAGRAMAIRA----GRAVTVSASGRPADWRAEDVRAVEAGAQEFVAVDPAGVHHGL 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G++   N ++   ++  +    + A             G+       Q F  L+D
Sbjct: 311 RIALPGHYNVANCVLAAALLDAVDVSPEQAAPG---LRTATVPGRLEAVDRGQDFLALVD 367

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++A +  L      G+GR   V G     G         +  V +      
Sbjct: 368 --YAHKPGALRAVLETLRG---QGKGRIAVVFGA---GGNRDAGKREPMGRVAAEL-ADL 418

Query: 404 VWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +              A   A      V                   GDVV+V  
Sbjct: 419 VVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEIGDRREAIAHAVRWARPGDVVLVAG 478

Query: 450 KS 451
           K 
Sbjct: 479 KG 480


>gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudonocardia sp. P1]
          Length = 534

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 154/470 (32%), Gaps = 57/470 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSI 83
            V G ++ + S+ P + F A+ G    G DF   A+  GA  V+ + D      I    +
Sbjct: 50  VVTGATLRAGSVRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGADRPEIRHSRL 109

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV         L  ++        ++  ++ +TG+ GKTT   +L   L++  ++   +G
Sbjct: 110 PVLVHPAPREVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTGLLG 169

Query: 142 SYNNHIGVPLTLARM---------------------PVDVDFGIFELGMSHLGEIRFLTH 180
           +    + VP    R                         V     E+    L   R    
Sbjct: 170 TVRTRVQVPGEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGR--VG 227

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----FLNYDDSFFELLK 236
             R  +   T ++  HL     + +   AKA +F G            +  DD +   L 
Sbjct: 228 GSRFAVGAFTNLSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQLA 287

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQ 294
             S      T+ S     +A + +R      +   ++  V   G +  V     G +   
Sbjct: 288 --SRRPDAVTVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVA 345

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L+ L  +       + A +  +      GR +R     + G   L    Y   PA++ 
Sbjct: 346 NALVALACLDADGIPPEVAAQGFARLS-VPGRMQRV----DAGQPWLAVVDYAHKPAAVA 400

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFH 410
           A +    +   H   R I VLG   +     +     +    ++ + + V       G  
Sbjct: 401 ALLDA-LRAQIHPHARVITVLGCGGDRDTGKRPL---MGAAAAIRSDTLVVTDDNPRGEE 456

Query: 411 VLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++ A+       P    V          ++   S   GD VV+  K 
Sbjct: 457 PATIRRAMLEGAMHEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKG 506


>gi|256784420|ref|ZP_05522851.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces lividans TK24]
 gi|289768299|ref|ZP_06527677.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
 gi|289698498|gb|EFD65927.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
          Length = 462

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 154/439 (35%), Gaps = 45/439 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVF 86
           D++  A  +A  A+    + GH      +   A  VVV++ +      L       IPV 
Sbjct: 40  DAKESATADALRALGATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L AL          +    IA+ G+ GKTTT  ML ++LS +             
Sbjct: 98  HRSDALAAL---------MNGLRPIAVAGTHGKTTTTSMLAVSLSELD--------LGPS 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L     +   G  E+ ++   E     H   P +A++  +   H +N++ ++EI
Sbjct: 141 YAIGGDLDAPGSNALHGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +       +   GT+ +  D      L  +    G     ++G+S++AD ++      
Sbjct: 201 YESFETFAGKIVPGGTLVIAADHEGARELTRRLA--GRVRTVTYGESEDADVRILSVVPQ 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +S + V L G  +       G H A N +  L   + L         AL+ +   +  
Sbjct: 259 GLKSEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVK-- 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R +         ++ +SY  +P  M A +     +       RI VL     +   +Q
Sbjct: 317 -RRLQLKGEAAGVQVV-DSYAHHPTEMTADLEA---MRAAVGDARILVLFQ-PHLFSRTQ 370

Query: 387 SFHIDLAEVLSLYNISHV---------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLF 436
               ++   L+L + S V          + G     + +A       V      D     
Sbjct: 371 ELGKEMGHALALADASVVLDIYPAREDPIPGVTSELIVEAARAAGADVTPVHDKDASPAL 430

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           +      GD+V+   +   
Sbjct: 431 VAGMAKAGDLVLTMGAGDV 449


>gi|152977042|ref|YP_001376559.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189028972|sp|A7GTV6|MURC_BACCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152025794|gb|ABS23564.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 88/409 (21%), Positives = 144/409 (35%), Gaps = 69/409 (16%)

Query: 7   FHDLLQAIQGHSIGIVPQGFV----NGISI---DSRSIAPQEAFFAIKGPHYDGHDFILH 59
            HD+   +QG          V     GISI   D  +I   +   A       G+ F   
Sbjct: 21  LHDMKNTVQGSDYEKRFFTQVALEKRGISILPFDKNNIKEGQVIIA-------GNAF--- 70

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                        + + +   L+IPV      LG L          S+ T +A+TG+ GK
Sbjct: 71  ---------PDTHEEIMAAKELNIPVHRYHHFLGNL---------MSQYTSVAVTGAHGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+T  +L   +     T   IG    H            +  +  FE       E R   
Sbjct: 113 TSTTGLLAHVMQGANPTSYLIGDGTGHGV---------ENSKYFAFEA-----CEYRRHF 158

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P  A++T I   H   F+ I ++  A  E+   ++K   I    DD   + ++AK 
Sbjct: 159 LSYYPDYAIMTNIDFDHPDYFADINDVFHAFQEMALQVKKG--IIACGDDEELQKIQAKV 216

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLM 298
                  +  +G  ++ DFQ R  ++ ++ +  +V ++    E     G G H   N L 
Sbjct: 217 ------PVIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNALA 270

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +      DV+     L+ F   + R              +I + Y  +P  + A I 
Sbjct: 271 VIALCHYENIDVEVVKHQLTTFEGVKRRFNEKTVRDQ-----VIIDDYAHHPTEINATIE 325

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              Q  P  E   IA+          +++F  + AE LS      V+L 
Sbjct: 326 AAHQKYPERE--IIAIF--QPHTFSRTETFLDEFAESLSK--ADQVYLC 368


>gi|321312518|ref|YP_004204805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
 gi|320018792|gb|ADV93778.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
          Length = 432

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 165/476 (34%), Gaps = 88/476 (18%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSI----------APQEAFFAIKGP 49
           M+PL     +L        G   + F+    +++ R+I           P     A  G 
Sbjct: 14  MSPL---AQILHDNGYTVQGSDIEKFIFTQTALEKRNITILPFRAENIKPGMTVIA--GN 68

Query: 50  HY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            + D H  I  A+ +G                  IPV      LG   K         K 
Sbjct: 69  AFPDTHPEIEKAMSEG------------------IPVIRYHKFLGDYMK---------KF 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +A+TG+ GKT+T  +L   + + K T   IG             +   + ++ +FE  
Sbjct: 102 TSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDG---------TGQGNENSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R      +P  A++T I   H   FS I+++  A  E+   + K   I    D
Sbjct: 152 ----CEYRRHFLSYQPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQVNKG--IIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHG 287
           D     + A         +  +G  +  DFQ R   + +E +  +V ++    +      
Sbjct: 206 DEHLPKIHANV------PVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPA 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L  + +      D      AL  F   + R    +     G   LID+ Y 
Sbjct: 260 YGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQL----GDQVLIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +K  I    Q  P  E   +AV          +Q F  + AE LS      V+L 
Sbjct: 315 HHPTEIKVTIEAARQKYPDRE--IVAVF--QPHTFTRTQQFLDEFAESLS--GADCVYLC 368

Query: 408 GFHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCG 456
                A ++A   +I      +H ++ ++       S L   D  V++   +    
Sbjct: 369 DIFGSARENAGKLTIGDLQGKIHNAKLIEE---DDTSVLKAHDKAVLIFMGAGDIQ 421


>gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 481

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 168/479 (35%), Gaps = 69/479 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++++   GH          + IS DSR++     FF +KG ++   +F+  AV+ G 
Sbjct: 16  NFREIIK--DGHYFFHDSGLTFDKISYDSRNVTNTTLFF-VKGENFKK-EFLEGAVESGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +D       + IPV  V+D+  A++   +      + K  I+A TG+ GKTT+ 
Sbjct: 72  KFYISESDF-----EVGIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAFTGTKGKTTSA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPV-----DVDFGIFE 166
                 LS      A + + N  +               L L +M       D    I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGKNFFKSSLTTPESLDLFKMMAQAVANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +    +V   I+P H+        E+    K  + E    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRLLMEN---SRAVV 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +  ++       +G++ +            +      ++ GK + + 
Sbjct: 241 VNSGMDHFQIVKEQVSSIEHD---FYGENSSNTI--------IDSQAFNFEVSGKLAGKY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N L        L A +    K           G+        G    +D
Sbjct: 290 DIQLIGRFNQENALAAGLACLRLGASLTDIQKG---ITLTRVPGRMEVLTQKNGAKVFVD 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+   ++V+ +   H +G+ + VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLTKLLNVVQE---HQKGQTVLVLGA---TGNKGESRRKDFGILLNKHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KSS 452
           V L+         + +   +    S  V              S    +GD V++  K +
Sbjct: 399 VILTADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGA 457


>gi|221194726|ref|ZP_03567783.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185630|gb|EEE18020.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
          Length = 470

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 146/403 (36%), Gaps = 41/403 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      V     L +P++    +L  L++             IA+ G+ GKTTT  M
Sbjct: 78  SAIPETNPEVIRARELGLPIWPRAKMLSYLSR---------GRKTIAVAGTHGKTTTSSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L  +             +             D+ + E   S    +      + P+
Sbjct: 129 IATMLDKMDLD---PSFLIGGVVEGYDTNGRNGSGDYFVCEADESDGSFM-----YLTPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I   HL ++  +E I     +    L+ + T+ +N D+  +  L   +     +
Sbjct: 181 VIVITNIEADHLDHYGTLENIEKTFCDFMRLLDPSETVIINGDNPHWVELARST----GR 236

Query: 246 TIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGI 302
            + S+G S+  D+  + R   Q  E         G  ++VV     G H   N    L  
Sbjct: 237 KVVSYGFSETCDYVCRARMRTQGIENPLSVTTPSGACIDVVLPASPGTHNIANACAALAT 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             IL  D+  A +ALS F   +G  +R+    +    T++D+ Y  +P  +KA    LS 
Sbjct: 297 ADILGYDLSEAARALSQF---KGARRRFTHVGDICGITVVDD-YGHHPTEIKA---TLSA 349

Query: 363 ISPHGEGRRIAVL--GDMCEMGELSQSF-HI----DLAEVLSLYNISHVWLSGFHVLALK 415
             P G  R I V          +L+  F H     D   V+ +++   + + G     + 
Sbjct: 350 ALPLGFKRVICVFQPHRYSRTKDLADLFAHAFDGVDTLLVMDVFSAGELPIPGISGKTVS 409

Query: 416 DALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +  +     V Y  +   L   +      GD+V+ + +   
Sbjct: 410 SHVKDAGKVSDVRYIPSRHKLVDTLCELCRPGDLVITQGAGDV 452


>gi|217033769|ref|ZP_03439195.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
 gi|216943818|gb|EEC23258.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
          Length = 493

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 135/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|317138866|ref|XP_001816953.2| UDP-N-acetylmuramate--L-alanine ligase [Aspergillus oryzae RIB40]
          Length = 641

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 145/419 (34%), Gaps = 55/419 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V +     IPV    ++L +L +             IAI+GS GK+TT  M+   L +  
Sbjct: 247 VDAARDRRIPVIHRSEMLASLMRHH---------KSIAISGSHGKSTTTSMVAGMLEAGG 297

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            +   I           + A M       + E   S    +R     +   I+V+T I  
Sbjct: 298 LSPTTISGAVVTQYG--SNAHMGSGHWM-VVEADESDGTMVR-----LPALISVVTNIDS 349

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H++ +   E+  +  A+    +   G   L  DD     +  +      + I ++G S+
Sbjct: 350 DHITFYGTQEKTRATFAQFVRNVPFYGLAVLCIDDPGVRKILPEVQ---DRNIVTYGVSE 406

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +AD +    +   + S   + ++ +          +V + +G H  QN L T  I   L+
Sbjct: 407 DADVRAENVEYNPQDSTFVLSVRDRRDGTRRVVGSIVLNVLGLHNVQNALATTAIALELS 466

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++++   AL  F    G  +RY          +ID+ +  +PA +KA  ++  Q     
Sbjct: 467 IELESIRYALGSFQ---GTNRRYIHVGEANGIQIIDD-FGTHPAEIKATQTMAKQAGA-- 520

Query: 368 EGRRIAV-------------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
             R IAV             L +        +S HI + +      +  V   G     L
Sbjct: 521 -RRVIAVYQPTVVVRNVEAWLEEYP--AAFEESAHIIIGQ-ADGVEVDPVPT-GEARETL 575

Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              L                L   +     +GD VV     S   +     L  +  A+
Sbjct: 576 VQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMGFRSSTLW--ARALAGQLKAL 632


>gi|83764807|dbj|BAE54951.1| unnamed protein product [Aspergillus oryzae]
          Length = 497

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 145/419 (34%), Gaps = 55/419 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V +     IPV    ++L +L +             IAI+GS GK+TT  M+   L +  
Sbjct: 103 VDAARDRRIPVIHRSEMLASLMRHH---------KSIAISGSHGKSTTTSMVAGMLEAGG 153

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            +   I           + A M       + E   S    +R     +   I+V+T I  
Sbjct: 154 LSPTTISGAVVTQYG--SNAHMGSGHWM-VVEADESDGTMVR-----LPALISVVTNIDS 205

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H++ +   E+  +  A+    +   G   L  DD     +  +      + I ++G S+
Sbjct: 206 DHITFYGTQEKTRATFAQFVRNVPFYGLAVLCIDDPGVRKILPEVQ---DRNIVTYGVSE 262

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +AD +    +   + S   + ++ +          +V + +G H  QN L T  I   L+
Sbjct: 263 DADVRAENVEYNPQDSTFVLSVRDRRDGTRRVVGSIVLNVLGLHNVQNALATTAIALELS 322

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++++   AL  F    G  +RY          +ID+ +  +PA +KA  ++  Q     
Sbjct: 323 IELESIRYALGSFQ---GTNRRYIHVGEANGIQIIDD-FGTHPAEIKATQTMAKQAGA-- 376

Query: 368 EGRRIAV-------------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
             R IAV             L +        +S HI + +      +  V   G     L
Sbjct: 377 -RRVIAVYQPTVVVRNVEAWLEEYP--AAFEESAHIIIGQ-ADGVEVDPVPT-GEARETL 431

Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              L                L   +     +GD VV     S   +     L  +  A+
Sbjct: 432 VQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMGFRSSTLW--ARALAGQLKAL 488


>gi|71066305|ref|YP_265032.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
 gi|109892725|sp|Q4FQW0|MURC_PSYA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71039290|gb|AAZ19598.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
          Length = 479

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 129/390 (33%), Gaps = 39/390 (10%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV    D+LG L +             IAI G+ GKTTT  +LT  ++        
Sbjct: 102 EARLPVVRRADMLGELMRYR---------HGIAIAGAHGKTTTTSLLTTMMAE------- 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ +    +   L     +   G     ++   E       + P  A++T I   H+  
Sbjct: 146 -GNLDPTYVIGGKLNASGKNAALGSSRFLIAEADESDASFLSLHPMAAIVTNIDQDHMET 204

Query: 200 FS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           +    +++ +A  +  + +   G   +  DD     +         + + +FG     D 
Sbjct: 205 YGNSFDKLKAAYIQFLQNMPFYGLAVVCGDDPELYAMIDDI----GRPVLTFGLEPFNDV 260

Query: 259 QLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           Q         ++   V  +  + + +  +  G H   N L  + + +    D     +AL
Sbjct: 261 QAVDLVTEGTKTHFTVLRRDHEPLRLTLNIPGVHNVYNALAAITMATDEGVDDAAITRAL 320

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHG 367
             F     R +++          L+ + Y  +P  + A I    Q            PH 
Sbjct: 321 QKFEGVGRRFEQHASVTIDDGDVLLIDDYGHHPKEVDATIKAARQSFPERRLVMLFQPHR 380

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-Y 426
             R      D  E+             +L +Y+     ++G    AL  ++     V   
Sbjct: 381 YSRTRDCFDDFVEVLSSVDEL-----LLLDVYSAGESPIAGADTKALARSIRLRGAVEPT 435

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                 +   +Q  L   D+++ + + + G
Sbjct: 436 IVDKKNIAAVMQRLLKANDMLITQGAGNVG 465


>gi|229823042|ref|ZP_04449111.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
 gi|229787481|gb|EEP23595.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
          Length = 443

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 131/385 (34%), Gaps = 57/385 (14%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                +L    T IA++G  GKT+T  +L   L  +      IG    +         + 
Sbjct: 94  HHFLGKLIKGYTSIAVSGCHGKTSTTGLLAHTLKHLAPLSYLIGDGTGYGQESANYFGLE 153

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                           E R       P  A+IT +   H   F+ IE++ SA        
Sbjct: 154 A--------------CEYRRHFLSYEPDYAIITNVDFDHPDYFTSIEDVFSAFTSFAGQT 199

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K   +    +D++   L+A         +Y +G   N+       ++  + S  +V  +
Sbjct: 200 TK--AVIACGEDAYLRQLEAPV------PVYYYGFDSNSTVYATNIERTQDGSDFDVTFE 251

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK +   H    G H   N L  + ++++     D   + L+ F   +    R       
Sbjct: 252 GKFLGRFHVPTYGKHNILNALAVITVLTLEGFPADAIAQNLATFTGVK----RRFSVKTV 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G  T+ID+ Y  +P+ +KA I    Q  P  + R IAV          + +   + AE L
Sbjct: 308 GDLTIIDD-YAHHPSEIKATIDATKQRYP--DKRCIAVF--QPHTFSRTVALLNEFAESL 362

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-------------D 443
           +L     V+L          A  +S  V    T+  L   I   +               
Sbjct: 363 NL--ADQVYLC----DIFNSAREQSGEV----TIQDLAALIDQEVEIISSEHLSPLMQYK 412

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
            DV+V   +      ++     +E+
Sbjct: 413 DDVIVFMGAGDV--DKIAQRFEKEY 435


>gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str.
           13]
          Length = 435

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 132/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 92  VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 147

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 148 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 202

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 203 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 257

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D+ +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 258 PGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 313

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 314 HHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 373

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 374 KDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 426


>gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
 gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
          Length = 497

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 147/456 (32%), Gaps = 45/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G++  S  + P + + A+ G    G +F+  A   GA  V+ +           +
Sbjct: 22  DATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAAAGAVAVLTDAAGAELAAGYGL 81

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D    L  LA         K T+I +TG+ GKT+T  ++   L +   T   IG
Sbjct: 82  PTLVVADPRAVLGTLASAVYGDPTEKLTVIGVTGTAGKTSTAYLVESGLRAAGHTTGLIG 141

Query: 142 SYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +G                  +  A +   V   + E+    L   R     VR  
Sbjct: 142 TVETRLGDLVLDSVRTTPEATDLHAMLAAALERGVTAVVMEVSSHALAMGR--VGGVRFD 199

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   T     HL   +  ++  +AKA +F+G  +     LN+DD   + L   +      
Sbjct: 200 VGGWTNFGSDHLDFHADADDYFAAKARLFDG--RCAHEVLNHDDPALKALFKPATIS--- 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             YS     +A +               +    G  ++      G H   N L+ + ++ 
Sbjct: 255 --YSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGLVLDAGVALPGRHNVANALLAVAVLV 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D  TA + ++      GR +    ++           Y     ++ A ++ L ++S
Sbjct: 313 AAGVDAATAARGVAACGGVPGRLE----SVGVAGGVRGVVDYAHKTDAVVAVLAALRELS 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               GR I V+G   +     +       +   D+  V      +    +      L  A
Sbjct: 369 S---GRLICVIGAGGDRDRGKRPAMGAAAAKGADVVLVTDDNPRTEDPAT-IRAEVLAGA 424

Query: 418 LPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKS 451
                     E                 GDVV V  
Sbjct: 425 YDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLG 460


>gi|17232557|ref|NP_489105.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc sp. PCC 7120]
 gi|25008804|sp|Q8YM75|MURC_ANASP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17134203|dbj|BAB76764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 494

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 148/396 (37%), Gaps = 48/396 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SS 132
             +   L  P+    DVL AL          +    +A+ G+ GKTTT  M+   L  + 
Sbjct: 109 YQAAIELGCPILHRSDVLAALI---------NDYHSVAVAGTHGKTTTSSMIGYMLLEAG 159

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T    G  N   G             + + E   S    ++       P I +IT I
Sbjct: 160 LDPTIIVGGEVNAWEGNAR-----LGQSSYLVAEADESDGSLVKH-----APEIGIITNI 209

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H  ++  +EE+        +G +   T+  + D      L   +     +   ++  
Sbjct: 210 ELDHPDHYDTLEEVVDIFQTFAKGCK---TLIGSVDCETVRELLRNASGDRQQPTITYSL 266

Query: 253 SKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTAD 309
            ++  AD+ +      ++ +   V  +GK++ V+    +  H   N L  + +  ++  +
Sbjct: 267 HQDTEADYTVTNIDYRADGTTALVWEKGKALGVLKLKLLSRHNLSNALAAVAVGRLVGLE 326

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                K ++ F   EG  +R+         T ID+ Y  +P+ ++A ++  +++      
Sbjct: 327 FGEIAKGIAGF---EGARRRFEFRGEVDGITFIDD-YAHHPSEIRATLAA-ARLQARPGQ 381

Query: 370 RRIAVLG--------DMCEMGELSQSF-HIDLAEVLSLYNISH---VWLSGFHVLALKDA 417
           R +A+             E  E S+SF H DL  +  +Y+        +SG ++   +  
Sbjct: 382 RVVAIFQPHRYSRTLTFLE--EFSESFSHADLVVLTDIYSAGEPNLGLISGENL--AEKI 437

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                 V Y  T+  +  ++  +L  GD+ +   + 
Sbjct: 438 AQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLGAG 473


>gi|308184524|ref|YP_003928657.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
 gi|308060444|gb|ADO02340.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
          Length = 493

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 134/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E  + G   
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFETLINGVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +    P   R +            +
Sbjct: 330 RFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLHQGRKVIVTPGLVESNTES---NEALAQKIDEV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASKLKIPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|237753180|ref|ZP_04583660.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375447|gb|EEO25538.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 486

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 30/346 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S  TIIA+TGS GKT+ K  L+  L    K ++   S N   G+   + + +    D  I
Sbjct: 161 SNLTIIAVTGSYGKTSLKNYLSQILQESFKVHSTPRSVNTLTGIIADINQNLSPLTDIYI 220

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +  L+ P I V+  I  AH+  F  IE I   K EI E         
Sbjct: 221 VEAGARGSGDIKEIVELIAPQIVVVGKIGEAHIEYFKNIENIYRTKYEILESSRLQNAYI 280

Query: 225 LNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                      K       I+  I +F +           +   + +   ++++G+ +  
Sbjct: 281 Y----------KENIQPTNIQARIINFPQDP------SDIEATLQGTNFSLKVKGEKLSF 324

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+   + + S L    +  +K      P   R  +           ++D
Sbjct: 325 QTRILGAFNVINISAAIAVGSDLGISNERLVKQAQKLEPINHRLSKIVV----NDKIILD 380

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +SYN N   M  AI    +++    G++I V   + E    S+  +I LAE +       
Sbjct: 381 DSYNGNLDGMLEAI----RLASLHNGKKIIVTPGLVES---SKEANIKLAEAIDKV-FDI 432

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++G        +   S      +    +   ++S+   GD+++ 
Sbjct: 433 AIITGELNANTLRSNIHSTQKILLKDKTNIEHMLKSTTNSGDLILF 478


>gi|254502723|ref|ZP_05114874.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
 gi|222438794|gb|EEE45473.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
          Length = 469

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 146/425 (34%), Gaps = 52/425 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +   A         IA+ G+ GKTTT  M
Sbjct: 72  SAIKKDNPELVAAREKLIPVVRRAEMLAELMRFKQA---------IAVGGTHGKTTTTSM 122

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +   L    +  T    G  N +     T ARM  D D+ + E   S    ++     + 
Sbjct: 123 VAALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFVK-----LP 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A++T I P HL ++     +  A  +  + +   G   +  D    + +        
Sbjct: 173 ADVAIVTNIDPEHLDHYGDFSGVQKAFRQFIDNVPFYGFAVMCLDHPEVQTMIGNIE--- 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNM 296
            + I ++G +  AD +         +S   V ++ +          +V    G H   N 
Sbjct: 230 DRRIVTYGTNPQADVRFTDVSMDGGKSMFSVTIRDRRSGEETELSNLVLPMPGLHNVSNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + + S L        K +S F   +   +R+      G   + D+ Y  +P  +KA 
Sbjct: 290 TAAIAVASQLGVSPQDIEKGISSFGGVK---RRFTFTGEAGGVQVFDD-YGHHPVEIKAV 345

Query: 357 ISVLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGF 409
           +    +     +G+ IAV+       +     + S  F+  D   +  +Y      + G 
Sbjct: 346 LHAARE---STDGKVIAVMQPHRYTRLHSLFDDFSNCFNDADAVVITPVYEAGEQPIEGA 402

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLIN 462
               L   L    H  V      + L   ++     GD V+   + +           ++
Sbjct: 403 RHTDLVSGLKTRGHRQVQAINGPEELASVVKELAGPGDFVICLGAGNITQWAYALPEQLD 462

Query: 463 LLLEE 467
            L +E
Sbjct: 463 ALQKE 467


>gi|302383799|ref|YP_003819622.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194427|gb|ADL01999.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 484

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 164/450 (36%), Gaps = 53/450 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVF 86
           D+RS A  +   A+    + GHD     V +G   VV +T        +       IP+ 
Sbjct: 43  DARSSANTDRLAALGAKIFIGHD--AAHVGEGVSAVVYSTAVKATNPEMMVARERRIPLV 100

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              ++L  L +L            IA+ G+ GKTTT  M+   L +           N  
Sbjct: 101 RRAEMLAELMRLQF---------SIAVGGTHGKTTTTSMVAALLDAAGFD---PTVVNGG 148

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           I           D D+ + E   S    +R     ++  +A++T I P HL ++   + +
Sbjct: 149 IINAYGTNAKVGDGDWIVVEADESDGSFLR-----LKSTVAIVTNIDPEHLDHYGDFDAV 203

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             A  +  E +   G   +  D    + L A+   +  + I ++G +  A  +  K +  
Sbjct: 204 RKAFCDFVENIPFYGFAAVCLDHPEVQRLVAQ---IDNRRIVTYGMNPQAMVRADKVEMS 260

Query: 267 SEQSWMEVQLQGKSM----------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            + +  +V +QG+            ++     G+H   N L  + +   L    D     
Sbjct: 261 PDGARFDVLIQGRGAAALEDPVRIPDLHLPMAGWHNVANALAAIAVARELDVSDDAIRAG 320

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAV 374
           L+ F   +   +R+          ++D+ Y  +P  + A +    Q++    G GR IAV
Sbjct: 321 LASFAGVK---RRFTTTGVVNGVRIVDD-YGHHPVEIAAVLKAARQVAHTAEGGGRVIAV 376

Query: 375 L--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           +       + +L   F       D   V  +Y      + G    AL D + R  H+  S
Sbjct: 377 VQPHRFTRLRDLMDEFSTSFSDADSVIVADVYAAGEAPIEGVDKQALVDGIRRYGHLRVS 436

Query: 428 --ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             E    L   I      GDVVV+  +   
Sbjct: 437 ALENAAVLPRVIAEEAKAGDVVVLLGAGDI 466


>gi|56964532|ref|YP_176263.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
 gi|59798127|sp|Q5WEA8|MURC_BACSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56910775|dbj|BAD65302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
          Length = 435

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 125/361 (34%), Gaps = 50/361 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA++GS GKT+T  +L   L S++ T   IG             +   +  + +FE
Sbjct: 100 QFTSIAVSGSHGKTSTTGLLAHVLGSVEPTSYLIGDG---------TGKGAANSTYFVFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   V+T I   H   F  +E++ SA   + + + K   I   
Sbjct: 151 A-----CEYRRHFLNYSPDYCVMTNIDFDHPDYFKSVEDVVSAFQTMAKQVNK--AIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + L+A         I  +G   + DFQ +  K   E +  +  ++G      V 
Sbjct: 204 GDDEHLQTLQANV------PIVYYGLGDHNDFQAKSIKNTPEGTAFDAWVRGDLFGSFVI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G G H  +N L  + +        +  ++ L  F   +      R +  +    ++ + 
Sbjct: 258 PGFGDHNVKNALSVIALCHYEGIGYEDIVEHLKTFAGVK-----RRFSEKRSGKQILIDD 312

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  + A I    +            PH   R    L +  E   LSQ+ H+ L ++
Sbjct: 313 YAHHPTEIAATIEATKKKYHDREVTAIFQPHTFTRTKTFLNEFAE--ALSQADHVYLCDI 370

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                     LS   + AL D              +     ++       V++   +   
Sbjct: 371 FGSAREEQGSLSIEQLQALVDGAKLLT--------EAEIETLKGHGES--VLLFMGAGDI 420

Query: 456 G 456
            
Sbjct: 421 Q 421


>gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
 gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
          Length = 457

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 132/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +           ++ +
Sbjct: 336 HHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDCDEL-----VLMDI 390

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           Y      L   +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 391 YAAREKDLGEINSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|28378181|ref|NP_785073.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           WCFS1]
 gi|38258048|sp|Q88WZ5|MURC_LACPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28271016|emb|CAD63921.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus plantarum
           WCFS1]
          Length = 436

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 136/378 (35%), Gaps = 54/378 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     + +PV+   + LG L +           T I + G+ GKT+T  +L+  L
Sbjct: 76  DHPEIKKAREMGLPVYRYHEFLGKLME---------GFTSIGVAGTHGKTSTTGLLSHVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S I  T   IG             +   D  F +FE       E R       P  A++T
Sbjct: 127 SHIAPTSYLIGDG---------TGKGTPDARFFVFEA-----DEYRRHFVAYHPDYAIMT 172

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H   +  + ++ SA  +    ++K   IF   DD     L   +       IY +
Sbjct: 173 NVDFDHPDYYKDLADVQSAFQQFGNQVKKG--IFAWGDDESLRHLDVDT------PIYYY 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G +   DFQ    K+ ++ S  EV+   +S+ +      G H   N    + +      +
Sbjct: 225 GTNDRDDFQAVNIKRTTKGSSFEVKYHDESLGKFEIPLFGEHNVLNSTAVIAVSYFEKVN 284

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D   + L  F   + R   ++     G   +ID+ Y  +P+ +KA +    Q  P  E 
Sbjct: 285 LDEIRRELLDFSGVKRRFSEHQV----GDMVMIDD-YAHHPSEIKATLDAARQKYPDKE- 338

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDAL 418
             +AV          +++     A   SL    HV+L+                 L   L
Sbjct: 339 -ILAVF--QPHTFSRTKALMDGFA--ASLSKADHVFLTNIFSSAREKSGDVSSKDLAAKL 393

Query: 419 PRSIHVHYSETMDGLFLF 436
           P    +  ++ M  L  +
Sbjct: 394 PNGGEIITTDDMSALTAY 411


>gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 457

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 132/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D+ +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 336 HHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 395

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 396 KDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|301165435|emb|CBW25006.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Bacteriovorax marinus SJ]
          Length = 457

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 156/437 (35%), Gaps = 48/437 (10%)

Query: 48  GPHYDGHDFILHAV-----QKGAGLVVVNTDMVASIGSLSIPVFGVDDV----------- 91
           G    G D    A      + GA + V +     +  ++ +    +DD            
Sbjct: 31  GYKVSGSDIAESATVAKLRKLGADVFVGHKSENITDATVMVYSSAIDDTNPEVIAAKAKR 90

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-IKKTYACIGSYNNHIGVP 150
           L  + +  + A L      +AI G+ GKTTT   L   L          IG    ++   
Sbjct: 91  LPIMRRAEMLAELMRLKKGLAIAGTHGKTTTTSFLATILQESKYDPTYIIGGIVKNLDGH 150

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                    V  G F +  +   +  FL  L+ P ++V+T I   H+ ++     + S+ 
Sbjct: 151 -------AKVGKGEFLVAEADESDGSFL--LLNPIMSVVTNIDNDHMDHYGSEANLLSSF 201

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E    +   G   LN  D     L  +      K   +FG    ADF+ R  +  +  +
Sbjct: 202 TEFINKVPFYGLTALNAHDERLMALTKEVK----KPWVTFGVETEADFEARDIRYENNIT 257

Query: 271 WMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             ++   G K +E+     G H   N L  + +   +    +   K++  F   +G G+R
Sbjct: 258 IYDLYHSGEKKIEIRITIPGKHNILNSLGAIALAFNMGVPFEEIAKSIIKF---DGVGRR 314

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS-- 387
           ++  + +  F +ID+ Y  +P  +   +  + +  P+   ++I V+ +            
Sbjct: 315 FQTLVAKDNFEVIDD-YAHHPTEIDVTLKAMKETRPN---KKIVVVFEPHRYSRTRDCWD 370

Query: 388 --FH----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQS 439
              H     D   +  +Y  S   + G     L   + +     V   ++++ +   I +
Sbjct: 371 SFLHCFNSADTVYISPIYPASEKPIPGIEADRLIADINKLHPDLVKKLDSIENIDSIIDN 430

Query: 440 SLVDGDVVVVKSSNSCG 456
              +   +V   + S G
Sbjct: 431 YKEENVTLVTLGAGSIG 447


>gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           str. 13]
          Length = 466

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 132/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 123 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 179 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 234 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D+ +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 289 PGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 344

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 345 HHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 404

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 405 KDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 457


>gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
 gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
          Length = 441

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 40/346 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    +IAITGS GK+T  ++  +   +        G+          L  +  D D  +
Sbjct: 107 QVDKPVIAITGSNGKSTVTDLTGVVAKAAGLKVGVGGNIGVP-----ALDLLAQDADLYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +    A    ++  H+  + G+E    AK  IF+         
Sbjct: 162 LELSSFQL----ETTSSLSLKAAAFLNLSEDHMDRYEGMEGYRQAKLRIFDH---ADACI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD      KA    +G K +  F  + +AD+ L + +          Q     M   
Sbjct: 215 VNADD------KATYPDVGDKKLIEFSLNGSADYHLAELQ----GQEFLFQGSAPIMPSS 264

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L+ L ++S +  D+   + A        G   R +   +      ++
Sbjct: 265 DLTLVGRHNIANALVVLALLSQVDVDLSLGLDA---LKSYSGLTHRCQVVADNQGIKWVN 321

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N AS  AA+S LS      +G+   ++G + +  + S     +LA VL+  N+  
Sbjct: 322 DSKATNVASTLAALSGLS-----LQGKLYLLVGGVGKGADFS-----ELAPVLASLNV-Q 370

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G         +       Y + M+ +  +I   L  GD+V++
Sbjct: 371 LCCFGEDG---SQFMSLHPSAKYFDNMEAIVAWINPQLQAGDMVLL 413


>gi|332981585|ref|YP_004463026.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
 gi|332699263|gb|AEE96204.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
          Length = 469

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 137/422 (32%), Gaps = 46/422 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           KGA LVV    +      L+          D    L ++            IA+ G+ GK
Sbjct: 69  KGADLVVYTAAIHNDNPELNEANGLGIPTVDRATFLGQIMKNY-----GKGIAVAGTHGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  +++I L +           +  + V   L  +  +V  G  +  ++   E     
Sbjct: 124 TTTTSIISIILQNAG--------LDPTVLVGGELDAIGGNVRVGESQYFVTEACEYVESF 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P+IAVI  I   HL  F  +++I +A     +     G +    DD   E L +  
Sbjct: 176 LKFYPYIAVILNIERDHLDYFKDLDDIYNAFLSFAKLTPDDGYVVGCIDDPLVEQLLSDM 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
               I    S+G  K A +         +      +   G +M        G H   N L
Sbjct: 236 PDKAI----SYGIDKPAHWTADDIAFDKKGFPSFNIYCDGLNMGRFSLSIPGRHNIYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++ +  +   D++            +G  +R+           + + Y  +P  +KA I
Sbjct: 292 ASVAVADLCGIDIEMIK---ESLRLYKGAHRRFEVKGRLEEGVTVIDDYAHHPTEIKATI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                   +       V          ++    + A   + Y I H+ ++  +     D 
Sbjct: 349 QAALNYPHNH---IWCVF--QPHTYTRTRLLLDEFAS--AFYGIDHLIITDIYAAREVDD 401

Query: 418 L------------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                            +  Y E    +  +I  +   GD+++   +     Y++ + LL
Sbjct: 402 GSINSKDLALRINQAGQNAIYMEDFSSIERYILENCQPGDIIITMGAGDV--YKIGDDLL 459

Query: 466 EE 467
           E 
Sbjct: 460 EH 461


>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
 gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
          Length = 445

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 123/346 (35%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +      L + L+      V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP-----LCDALAG-KAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGIDAPKIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|301169876|emb|CBW29480.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae 10810]
          Length = 437

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 136/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+   E      LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAE---VGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L         K   SF ++ +AD+ L+   +  +Q  M   EV L  + +  
Sbjct: 212 NED----KLTFGEGENQAKQTVSFAEN-SADYWLK--TENGKQYLMAKDEVILPCEEVT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D    AL  F   +G   R++ A        I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAVGINLDAIRTALCHF---KGLDHRFQLAHQANGVRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++   I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YVEGKLHLLLGGDGKGADFS-----ELAELINQPQI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   H  ETM+    F++  L  GD+V++
Sbjct: 367 CYCFGRDGAQLAKLSSQS---HLFETMEQAIAFLRPILQSGDMVLL 409


>gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
 gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
          Length = 443

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 119/342 (34%), Gaps = 35/342 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITGS GKTTT  ++              G+    +     L R     D  + EL 
Sbjct: 109 KIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIGMPVLEAW-LVRGGKSADVWVLELS 167

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +    A    I+  HL  +  + + A  K  IF G        LN D
Sbjct: 168 SFQL----ETTDYLDADAATCLNISEDHLDRYDDLLDYARTKDMIFNG---KAIQVLNAD 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+F   +K ++     + I+ F  S++ D+ L       +    ++  Q           
Sbjct: 221 DAFCCAMKREN-----RPIHYFSLSQSIDYYLDSVSGSLKHQGADLMPQ-----TDIPLQ 270

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L  L +   +       +K + VF   +G   R      +     ID+S   
Sbjct: 271 GSHNVANVLAALALCESVGLARADLLKYIRVF---KGLPHRVEKVGEKNGVIFIDDSKGT 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AAI  L +       +   + G M +  + +          +    +  V+L G
Sbjct: 328 NVGATVAAIVGLPE-------KIWLIAGGMGKGQDFTP------LRGVLRGKVGAVFLIG 374

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +   L    + + + +T+        S    GD+V++
Sbjct: 375 VDAPKIARDLDNCGVDLIFCDTLPEAVQRAYSQAKSGDIVLL 416


>gi|153009075|ref|YP_001370290.1| UDP-N-acetylmuramate--L-alanine ligase [Ochrobactrum anthropi ATCC
           49188]
 gi|166224711|sp|A6WZQ7|MURC_OCHA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151560963|gb|ABS14461.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum anthropi ATCC
           49188]
          Length = 468

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 158/433 (36%), Gaps = 53/433 (12%)

Query: 41  EAFFAIKGPHYDGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
           E F   K  +      I  A V   +  +  N   + +     +P+    ++L  L +  
Sbjct: 54  EVFVGHKAEN------IGDAEVVVVSTAIKKNNPELVAAREKLLPIVRRAEMLAELMRFR 107

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMP 157
            A         +AI G+ GKTTT  M+   L    +  T    G  N +     T ARM 
Sbjct: 108 HA---------VAIGGTHGKTTTTSMVAALLDAGHLDPTVINGGIINAY----GTNARM- 153

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D D+ + E   S    ++     +   IAV+T I P HL ++   E + +A A+  E +
Sbjct: 154 GDGDWMVVEADESDGTFLK-----LPADIAVVTNIDPEHLDHYGNFENVRAAFAQFVENV 208

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  D    + L ++      + I ++G++  AD +    +     S  +V ++
Sbjct: 209 PFYGFGVMCLDHPEVQALVSRIE---DRRIVTYGQNPQADVRFVNHRMDGAASLFDVVIR 265

Query: 278 GKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +  E            G H   N    + +   L    D   + L  F   +   +R+ 
Sbjct: 266 SRKGEATEIKDLRLPMPGQHNVSNATAAIAVAHELGISADDIRRGLGSFGGVK---RRFT 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----GELS 385
                    + D+ Y  +P  ++A +    + +   +GR +A++       +     E +
Sbjct: 323 HTGTWNGVEIFDD-YGHHPVEIRAVLKAAREAT---KGRVVAIVQPHRYTRLASLFDEFA 378

Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442
             F+  D   V  +Y      + G +  AL   +  + H    Y+   + L   + S   
Sbjct: 379 ACFNDADTVIVTPVYTAGEDPIEGVNSEALVSRIKTAGHRDARYASGPEALAPLVASIAE 438

Query: 443 DGDVVVVKSSNSC 455
            GD VV   + + 
Sbjct: 439 PGDFVVCLGAGNI 451


>gi|288553797|ref|YP_003425732.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288544957|gb|ADC48840.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 432

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 138/403 (34%), Gaps = 61/403 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                + + VA    + IPV      LG   +           T +A+TG  GKT+T  +
Sbjct: 68  AAYGEDHEEVARAKEIGIPVDQYPHFLGDFIQQF---------TSVAVTGCHGKTSTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L S   T   IG             +   D  + +FE       E R      +P 
Sbjct: 119 LSHVLGSAFPTSYLIGDG---------TGKGEEDSKYFVFEA-----CEYRRHFLNYKPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T I   H   F  ++++  A +E+   ++K   I    DD + + + A        
Sbjct: 165 YCIMTNIDFDHPDYFKDVDDVFEAFSEMAMQVKK--AIVACGDDQYLQGIHANV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +  +G S+  DFQ R  +   + +  +V ++          G G H   N L  + +  
Sbjct: 217 PVVFYGFSEQNDFQARSVEVTDKGTKFDVYVRNNLYGTFTIPGYGNHNVLNALAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L  F   +    R       G   LID+ Y  +P  + A +       
Sbjct: 277 YENVPAEVLKEHLKTFQGVK----RRFTEKKVGSQILIDD-YAHHPTEIAATVDSAK--K 329

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------- 413
            + +   +A+          +++F  + AE L L    HV+L      A           
Sbjct: 330 KYQDHEVVAIF--QPHTFTRTKTFLNEFAEALKL--ADHVYLCDIFGSAREQAGSLTIQD 385

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           L++ +P+S  +   E ++ L             ++   +    
Sbjct: 386 LQELIPQSQLIT-EEDVERLKEH------QNSTLLFMGAGDIQ 421


>gi|296394963|ref|YP_003659847.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
 gi|296182110|gb|ADG99016.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
          Length = 475

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 157/457 (34%), Gaps = 51/457 (11%)

Query: 33  DSRSIAPQEAFFA--IKGPHYDGHDFI---LHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           DSR+I    A  A  + G      DF+     AV      +  +   +       +PV  
Sbjct: 38  DSRAITDLRARGAQVLVGHDARALDFLDGGPTAVVVSQAAIPEDNPELVEARKRGVPVLY 97

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              VL AL +          +T + ++G+ GKTTT  +   AL             +   
Sbjct: 98  RPQVLAALME---------GSTRVLVSGTHGKTTTTSLTVAALQQAG--------LDPSF 140

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   L     +   G     ++   E        +P  AV+T +   HL +F   E   
Sbjct: 141 AVGGELGEAGTNAHQGSGNAFVAEADESDGSLLRYQPDAAVVTNVEADHLDHFGSSEAYV 200

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRK 262
           +   +    +   G++ ++ DD     L +++ A G + +  +G ++         +L  
Sbjct: 201 AVFDQFVRQIAPGGSLIVDVDDPGAAALGSRAAAAGTR-VLGYGSNQAPAGVLLAARLAD 259

Query: 263 WKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           W    E + + V    G          G HMA+N L  +       A +D AI  +S F 
Sbjct: 260 WSPHGEGARLTVVFEPGGERVFSIGVPGRHMARNALGAVLAAVFAGASLDGAISGVSAFT 319

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----SPHGEGRRIAVLGD 377
              G  +R++    +    + D+ Y  +P  + A ++    +         GR + V   
Sbjct: 320 ---GVRRRFQLKGAERGVRVFDD-YAHHPTEVAATLAGARALVTDPDGSCSGRLVVVF-- 373

Query: 378 MCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
              M   ++ F  + A          VL +Y       +G     + D + R++   +  
Sbjct: 374 QPHMYSRTRLFATEFAAALEAADEVLVLDVYGAREKPEAGITGALIADQV-RAVPARFVP 432

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINL 463
               +     S    GDVV+   +         +++ 
Sbjct: 433 MFSSVAQTAASLAKPGDVVITMGAGDVTLLGGEILDA 469


>gi|299535411|ref|ZP_07048733.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus fusiformis
           ZC1]
 gi|298729172|gb|EFI69725.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus fusiformis
           ZC1]
          Length = 437

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 130/359 (36%), Gaps = 46/359 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T IAITG+ GKT+T  ++   +   K T   IG                 + DF + E
Sbjct: 100 NYTSIAITGAHGKTSTTGLMAHVVGGYKPTSYLIGDG---------TGAGHENADFFVME 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  AV+T I   H   F+ IE++ SA   +   ++K   I   
Sbjct: 151 A-----CEYRRHFLAYNPDYAVMTNIDFDHPDYFANIEDVYSAFQSLALQVKK--AIIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD   + ++AK        +  +G     DF+ R  ++ +E +  +V ++ +       
Sbjct: 204 GDDEQLQRIQAKV------PVVYYGFGAENDFEARNVEKTTEGTKFDVFVRNEFYSTFFI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +        D   + L  +   +    R     + G   LID+ 
Sbjct: 258 PLFGDHAVLNTLAVITLCEYEGISPDIIQERLHTYKGVK----RRFTETDIGDNVLIDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  ++A I    Q  P  E   +A+          +Q+F  D A+ LSL + +++ 
Sbjct: 313 YAHHPTEIRATIQSARQKFPERE--LVAIF--QPHTFTRTQAFLQDFADSLSLADTAYLC 368

Query: 406 --------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                     G   +    +L     V  +E +D L         +G V +   +    
Sbjct: 369 DIFGSARETQGALSIHDLASLIEGSAVITTEGIDILTKH------NGAVFLFMGAGDVH 421


>gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
 gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
          Length = 540

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/515 (16%), Positives = 158/515 (30%), Gaps = 90/515 (17%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L   I+   I       +  I  DSR ++P   F   +G   +G  +I  A+ +GA  ++
Sbjct: 6   LFSGIRYELIKGSLDADICDIVDDSRQVSPNAVFVCRRGAVTNGRKYIGDAISRGAAGII 65

Query: 70  VNTDMVASIGSLSIP--------------VFGVDDVLGALNKLA--VAARLRSKATIIAI 113
           +  ++  S                     V  + D   ++ +L          + T+I +
Sbjct: 66  ITDEVWDSEDVYDADSMSGSLGYYPDDFFVVVMHDKRYSIGRLCNNFWGYPSRELTVIGV 125

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPV 158
           TG+ GKTT   M+   L +       IG+                   + +   L  M  
Sbjct: 126 TGTKGKTTVTYMMKKVLETCGCKTGLIGTIEVDDCSSQVQSVNTTPGVVQLHRILHNMVS 185

Query: 159 D-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFE 215
           +     + E+     G +      V   I + T I+P H+        EE    K+ +F 
Sbjct: 186 NGARCCVMEVSS--QGIMLGRVSGVDFDIGIFTNISPDHIGKNEHKTFEEYIRWKSTMFS 243

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKS--------------KNADF 258
                    +N DD +   +       G K    +  +G +                 D 
Sbjct: 244 MCR---YAVINMDDVYAPCICNGIQVNGAKKCSGVIGYGMNIWSKELYDKISEHMPVYDI 300

Query: 259 Q---------LRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                        +   +  +  E V   G  + +     G     N L  +    +L  
Sbjct: 301 HFSLYIGDQLAMAYNGITPGTECECVMPDGDRVPIHIDMPGLFNVYNALAVIAAGDVLGF 360

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
              T             RG+    A+ +G +  ID  Y  NP S++  +  L     +  
Sbjct: 361 PRSTV---SKALEDICVRGRMECAAVYRGAYVYID--YAHNPVSLENVLKTLRS---YFG 412

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDAL- 418
           G+   V G     G  ++S  I +  ++S        ++  +         +  ++D L 
Sbjct: 413 GKIFCVFGC---GGNRAKSRRIGMG-MVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLN 468

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            +     V GDVV++  K 
Sbjct: 469 AAGAEYIRIPDRKKAIRYGIVHAVAGDVVLLAGKG 503


>gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
 gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
          Length = 457

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 336 HHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 395

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 396 KDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|171057214|ref|YP_001789563.1| UDP-N-acetylmuramate--L-alanine ligase [Leptothrix cholodnii SP-6]
 gi|229620039|sp|B1XYR4|MURC_LEPCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170774659|gb|ACB32798.1| UDP-N-acetylmuramate--alanine ligase [Leptothrix cholodnii SP-6]
          Length = 469

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 162/445 (36%), Gaps = 58/445 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           + GHD    A   GA  VV +T        V +  +  IPV     +L  L +L      
Sbjct: 54  FVGHD---AAHIAGAQAVVTSTAVKGDNPEVIAARAARIPVVPRAVMLAELMRLKSG--- 107

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IAI G+ GKTTT  ++T  L+         IG   N  G    L +     D+ 
Sbjct: 108 ------IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGKLNSAGANSALGKG----DYI 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + E   S    +  L     P ++VIT I   H+  +      +  A  E    +   G 
Sbjct: 158 VVEADESDASFLNLL-----PVLSVITNIDADHMDTYGHDFARLKQAFVEFLHKMPFYGA 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKS- 280
             L  DD     +         + + ++G  ++   +                Q +  + 
Sbjct: 213 AILCGDDPGVRSIIPMIS----RPVITYGLGEDVQVRAVDVVALPGGQMRFTCQRRNGTV 268

Query: 281 ---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALN 335
              +E+  +  G H  +N L T+ + + L       + AL+ F     R +R+       
Sbjct: 269 LPDLEITLNLPGVHSVRNALATIAVATELELPDAPIVSALAKFSGVGRRFQRWGDWPCAA 328

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G FTLID+ Y  +P  M A I   +       GRR  VL         ++    D  +V
Sbjct: 329 GGEFTLIDD-YGHHPVEMAAVI---AAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKV 383

Query: 396 LSLYNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           +   +    + V+ +G   +   D   L R++ V       + + ++ L   I    + G
Sbjct: 384 MGSADAILLTEVYAAGEAPIVAADGRSLTRALRVAGKVDPLFVDDVNELPATIAEQALAG 443

Query: 445 DVVVVKSSNSCGF--YRLINLLLEE 467
           DVV+   + + G    R++ L+ E 
Sbjct: 444 DVVIAMGAGTIGGVPARVVELVKER 468


>gi|297626709|ref|YP_003688472.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922474|emb|CBL57047.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 480

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 132/382 (34%), Gaps = 24/382 (6%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V   +  L   ++ A  A L      +++ G+ GKTTT  M+    ++     + +    
Sbjct: 92  VAARERGLRVWHRSAALAALMLDHEAVSVAGTHGKTTTTAMIATMATTAGADPSYV--VG 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + +      AR+     F I E   S    +++ T      IAVIT +   HL N+   E
Sbjct: 150 SPLASTGESARIGKGTPF-IVEADESDGSFLQYPTR-----IAVITNVEADHLDNWGSAE 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKW 263
             A        G      + ++ DD+    L  K   L    T+ ++G++ +AD +L   
Sbjct: 204 HYARGFERFATG-PTVRDVVIDADDAGARELTGKLRRLASGPTVTTYGEADDADARLSDI 262

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +     S   +  QG    +     G H   N         +L    D  ++    F   
Sbjct: 263 EFSGMHSSATLHFQGHEYALRLSVPGRHNLWNAAAAFVTGRLLGLAADDLLRGAQAFAGT 322

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    A        + + Y  +P  ++AA++   +++     R +A       +  
Sbjct: 323 LRRFQPLGSATLPDGQVHVFDDYAHHPTEIRAALNAGRRVAGDH--RLVACF--QPHLYS 378

Query: 384 LSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGL 433
            ++ F  +    L+L         Y      + G     + DA        +Y      L
Sbjct: 379 RTREFATEFGRALALADLVVVTDIYGAREEPVPGVSGKLVADAAVEAGADTYYVPNKAEL 438

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
            + + + +  GD V+   +   
Sbjct: 439 PVELAALVRGGDFVLTLGAGDV 460


>gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           8013]
          Length = 445

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGKKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAITGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|328675240|gb|AEB27915.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida
           3523]
          Length = 451

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 140/367 (38%), Gaps = 32/367 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+TG+ GKTTT  +L   L  + K  +  +G    H+   + +       D  + E   
Sbjct: 106 LAVTGTHGKTTTSSILATLLCQLDKHSSFVVGGVVKHVDSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      + P +A++T I   H++ +    + +    A      E   +I+L  D
Sbjct: 162 SDASFL-----YLSPQVAIVTNIDLDHMATYKNSYQNLLENFANFISK-ESVKSIYLCAD 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L AK + L  K I S+G S +AD Q+  +    E +  ++  +G  +       
Sbjct: 216 DQGCRDLLAK-YTLTDKNITSYGFSNDADVQIYDYHIADEITHFKIIYKGDELSFKLQLP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  
Sbjct: 275 GRYNVQNATACIITCLDLGFKYEDISNALIKVAGVARRFDIYTKIISGYQVTVIDD-YGH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLY 399
           +P  +  ++S +    P+   + I V          ++    D      LA+   +L  Y
Sbjct: 334 HPVEVANSLSAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALALADQLILLPTY 389

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +     + G     +   L + +    +++ D    F++    D  VV+V+ +       
Sbjct: 390 SAGEQVIKGAESQDIAKELSQYL---LADSFDHAIYFLEELANDDTVVLVQGAGDV--TN 444

Query: 460 LINLLLE 466
           L+ +L E
Sbjct: 445 LVEMLGE 451


>gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
 gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
          Length = 499

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 166/459 (36%), Gaps = 55/459 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +  DSR +  +   F +KG      +++  ++      +V +     +I +  +P +
Sbjct: 31  FDDLQFDSRKVTKKNTLFVVKGAFK--IEYLTASLLDKISGIVTSRKEKINIPN--LPHW 86

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----YACI 140
            V +   AL  L+         K  I+ ITG+ GKT++  M    L  +       ++ I
Sbjct: 87  IVSNSQIALAVLSAEFFGHPEKKLKILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTI 146

Query: 141 GSYNNHIGVPLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHI 186
            ++        +    P   +              + + E+       ++     +   +
Sbjct: 147 DTFLGRGIKFKSELTTPESYELFSNMKKALDNGNKYLVMEVSS--QSYLKNRVFGIHFKV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+         +  + K  + E    +     N DD+  +     + + G 
Sbjct: 205 GAFLNISPDHIGINEHPTFADYLAHKKMLAEN---SDVFVSNIDDAHGQEFIDHAKSFGA 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT+ S  ++K AD      K   ++S   +  +G S E +    G     N  + + +V 
Sbjct: 262 KTV-SVSENKKADVNFHIKKADLDESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVR 320

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A KAL+        G+  +         ++D  Y  N  ++   ++ L    
Sbjct: 321 EMGFKPEKAKKALAELQIP---GRMVKIKTKSHGLIIVD--YAHNGQAVTTLLTFLKS-- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG-FHVLALKDALP 419
            H  G+ I VLG   + GE  +S      EV+S + +   +L     G      + + + 
Sbjct: 374 QHQGGKIIIVLGSPGDKGEDRRS---QFGEVISKF-VDVAYLTTDDPGTEDPHQINNQIR 429

Query: 420 RSIHVHYSETMDGLF--LFIQSSLVD---GDVVVV--KS 451
           ++I     E  + L     IQ ++      D+VV+  K 
Sbjct: 430 KAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAAKG 468


>gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium resistens DSM 45100]
          Length = 552

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 159/524 (30%), Gaps = 91/524 (17%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L +   G          V   +I S  +     F A+ G    G  F   A   
Sbjct: 1   MTTLQALAELTGGRISSTDAHVEVTSAAIGSTDVRAGGLFCAVPGLKTHGAQF---AGTS 57

Query: 64  GAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
            A  V+ +   + +     + +P   VDDV   +  +A         + ++I ITG+ GK
Sbjct: 58  QATAVLTDPAGEDILEAQGVELPRLIVDDVREWMGPVAAEIYGHPSRRLSVIGITGTSGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  ++  AL     +   IG+    I       ++                   V   
Sbjct: 118 TTTSYLVEKAL-LPNHSVGIIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVTHV 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-- 221
           + E+    L   R   H +   +A  T ++  HL     +E+   AKA++F         
Sbjct: 177 VMEVSSHALELGR--VHGIDFDVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHD 234

Query: 222 ----TIFLNYDDSFFELLKAKS---------HALGIKTIYSFGKSKNAD----------- 257
                  +  DD + + +   +             +  + + G   + D           
Sbjct: 235 VKLPAAVICVDDEWGQRMAQLASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIP 294

Query: 258 -FQLRKWKQCSEQ-SWMEVQLQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            + L   +        +             + +E      G     N  + L  V+ L  
Sbjct: 295 TWVLESVQVTPSGRQEIRFHTGATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGE 354

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           DV+ A +        +  G+       Q F  ++D  Y   P ++ A +  L+   P  E
Sbjct: 355 DVEAAAQH---LRDVQVPGRMQAVDEGQDFLAMVD--YAHKPGAVAAVVRTLADYLPTKE 409

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIH 423
           GR   V+G     G   Q     +    +L     V+++           +++A+     
Sbjct: 410 GRIGIVIGA---GGNRDQDKRPKMGYEAALV-ADAVFVTDDNPRDEDPAPIREAIYSGAE 465

Query: 424 VHYSE--------------TMDGLFLFIQSSLVDGDVVVV--KS 451
             ++E                             GD +VV  K 
Sbjct: 466 AGFAERGVEKKTVTLANIADRAEAITAAVQWAQPGDAIVVAGKG 509


>gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
          Length = 522

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 167/467 (35%), Gaps = 57/467 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85
           V+G++  +++  P + F A+ G    G  +   A  +GA  V+ +    A +  +  I V
Sbjct: 37  VSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVGEIAV 96

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                   +L  L+        ++ T++ +TG+ GKTTT  +L     +  +    IG+ 
Sbjct: 97  LTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMTGVIGTV 156

Query: 144 NNHI------------GVPLTLARMPVDVDFGI----FELGMSHLGEIRFLTHLVRPHIA 187
              I              P T A + V  + G+     E+    L   R      R   A
Sbjct: 157 ETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGR--VDGTRFAAA 214

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIK 245
             T ++  HL +   +E    AKA++FE       G   +  DD++ E +   +     +
Sbjct: 215 GFTNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVAREGAGR 274

Query: 246 ------TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNML 297
                 T+ + G    AD+ +   ++    +   V    +G+ +    + +G H A N L
Sbjct: 275 GAQAPVTVATSG--ARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAANAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + LG+      +V   +          GR +R      Q F  ++D  Y   P   +A +
Sbjct: 333 LALGLAEAAGLEVGPELLRGWASISVPGRLER--VDAGQDFLAVVD--YAHKP---EALV 385

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---- 413
            VL  +  H EGR   V+G     G+  Q     + E  +L     V ++  +       
Sbjct: 386 KVLHALREHTEGRIAVVVGA---GGDRDQGKRPIMGEACAL-GAELVVVTDDNPRTEDPA 441

Query: 414 -----LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                +      S      E                 GD V+V  K 
Sbjct: 442 VIRAQVLAGAQESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKG 488


>gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 514

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 138/415 (33%), Gaps = 44/415 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              +  +  ++ DSR++ P   F   KG  +    ++ +A++ GA   V           
Sbjct: 26  GRDETVITYLTYDSRAVTPGTLFIC-KGAAFK-EQYLENAIRAGAVAYVSEVQYETE--- 80

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIA-----LSSI 133
             +P   V D+  A+  LA     ++    T+I   G+ GK+T+   +         ++ 
Sbjct: 81  TKVPCLIVKDIRKAMPPLAEMYFNKAWQELTVIGFGGTKGKSTSAYYMKAIVDDYMAATG 140

Query: 134 KKTYACIGSYN---------NHIGVPLTLARMPVDVDFGI------FELGMSHLGEIRFL 178
            K  A + S +         +HI  P ++  +   +   +       E+ +S        
Sbjct: 141 GKESAVLSSIDIYDGVIRQESHITTPESV-ELHEHMRHAVDSGITYLEMEVSSQALKYDR 199

Query: 179 THLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            + ++  +AV   I+  H+S       E+  S+K ++F   ++     +N D  F E   
Sbjct: 200 VNNMQFDVAVYLNISEDHISPIEHKDFEDYISSKMKMFALAKQ---AVVNLDADFVERAL 256

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +   G    +S  K  +ADF      +   +    V+             G    +N 
Sbjct: 257 KAAEDAGSFKTFSL-KDPSADFYGYNIHKEDGEIIFSVKCDKFDETFSLTMPGLFNVENA 315

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  +   ++L   ++     L           R     +          Y  N  S +  
Sbjct: 316 VAVVAAATLLNIPLEYIKSGLHRARSSG----RMELYTSADKRVTAVVDYAHNKLSFEKL 371

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                +  P  +   +A+ G     G  +     DL  +   Y+   V+L     
Sbjct: 372 FGSTREEYPDHD--IVAIFGCP---GYKAYIRRKDLGLIAGEYS-KKVYLVAEDP 420


>gi|3122408|sp|O31211|MURC_STAAU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2642659|gb|AAB87090.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Staphylococcus aureus]
          Length = 437

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 154/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + +  A    + + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEKARAHQMKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  VV+ K +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFKGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|284929364|ref|YP_003421886.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
 gi|284809808|gb|ADB95505.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
          Length = 501

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 153/425 (36%), Gaps = 49/425 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            ++   +   +  +  +     +      PVF   D+L AL          S    I + 
Sbjct: 107 KYLPQVI--CSTAITNDNSEYLAAKKKGCPVFHRSDILAALI---------SDYKSIGVA 155

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  ++   L          IG   +        AR+  +  + + E+  S   
Sbjct: 156 GTHGKTTTSSLIGYMLLEAGIDPTIIIGGEVDAWDGN---ARIGAEKGYLVAEVDESDGS 212

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I+       PHI VIT I   H  ++  ++++ +         +    +  + D     
Sbjct: 213 LIKH-----HPHIGVITNIELDHPDHYQNLDDVINTFQIFAAQCD---ILVGSLDCEII- 263

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
                S  L     YS   +K AD+ ++     ++ +  EV  +G  + ++    +G H 
Sbjct: 264 -----SSYLSPHITYSLDFNKQADYTVKNLVNDNKGARAEVWERGIYLGKINLTVLGNHN 318

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   +  +    + +L  F   +   +R+         T ID+ Y  +P+ 
Sbjct: 319 VSNTLAAIAVGRKIGLEFSVIVDSLLNFQSPK---RRFEKRGYCNEITFIDD-YAHHPSE 374

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHV 404
           +KA +S       +    RI V+            + + +  F+  DL  +  +Y+   +
Sbjct: 375 IKATLSAARSKIDNKLANRIVVIFQPHRYSRTFALLEKFATCFNEADLVVLTDIYSAGEI 434

Query: 405 W---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               + G  +   K+       V Y  +++ L   +   L   D+V+   +      ++I
Sbjct: 435 NTNNIYGEDLA--KEVSKNHPKVLYFPSLEDLPQKLPELLQPKDLVLFLGAG--NLNQII 490

Query: 462 NLLLE 466
             +++
Sbjct: 491 PHIID 495


>gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
 gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
          Length = 509

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 160/476 (33%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYK 204

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 205 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVHH 286
           F+LLK  +    I TI ++G+S+ +++Q+             +      L          
Sbjct: 260 FDLLKETADLFQIPTI-TYGRSEESNYQV--IHSDKGTHGFTLSSRQDHLAICDTAYDIL 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A    +        G+  +     G    +D  Y
Sbjct: 317 LAGGFNQENAASAIIAAALTGASSQDA---QAGLKEARVPGRMDQLIQTNGAHVYVD--Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 372 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLT 426

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 427 ADDPAFEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKG 482


>gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
 gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
          Length = 509

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 145 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 204

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 205 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 260 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 317 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 372 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 426

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 427 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 482


>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
 gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
          Length = 437

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 137/349 (39%), Gaps = 43/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+ ITGS GK+T   ++     +        G+          L+ +  D +  
Sbjct: 101 RTATKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H+  +  +E+   AK  I+         
Sbjct: 156 VLELSSFQL----ETTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHN---AKVG 208

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKS 280
            LN +DS    L         + I SF ++  AD+ L+   +  +Q  M   EV L  + 
Sbjct: 209 VLNNEDS----LTFGEGENQAEQIVSFAEN-GADYWLK--TENGKQYLMAKDEVILPCEE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N+L    +   +  ++D    AL  F   +G   R++ A       
Sbjct: 262 AT----LVGRHNYMNILAATALAQAVGINLDAIRTALRQF---KGLDHRFQLAHQANGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S  AA++ L     + EG+   +LG   +  + S     +LA++++   
Sbjct: 315 WINDSKATNVGSTVAALAGL-----YVEGKLHLLLGGDGKGADFS-----ELADLINQPQ 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I   +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 365 I-ICYCFGRDGAQLAKLSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
 gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
          Length = 501

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 160/476 (33%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVHH 286
           F+LLK  +    I TI ++G+S+ +++Q+             +      L          
Sbjct: 252 FDLLKETADLFQIPTI-TYGRSEESNYQV--IHSDKGTHGFTLSSRQDHLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A    +        G+  +     G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDA---QAGLKEARVPGRMDQLIQTNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKG 474


>gi|325288637|ref|YP_004264818.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964038|gb|ADY54817.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 453

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 46/415 (11%)

Query: 65  AGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A     +     +    L+IP++     LG L          SK   I I+G+ GKTTT 
Sbjct: 70  ASAAYDDHHPEIARAKELNIPIYSYPQFLGLL---------MSKKCGICISGTHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   L             +  I V  ++  +  +   G     ++   E R       
Sbjct: 121 AMIGKILVDSG--------IDPSIVVGSSVPSIGGNARAGKGNYFVAESCEYRRHFLNYS 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   V+T I   H   +  I ++ +A   +   L   G + +  +D     ++ K+    
Sbjct: 173 PQHLVVTNIEFDHPDYYKDIHDVIAAFQSLTGKLPANGNLIIWQEDPNRTQIQTKA---- 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
              I ++G S++AD +       +  S   V +  +S+  ++    G H   + L  + +
Sbjct: 229 --PITTYGFSEDADIKAENIVYSNGGSIFSVVINKESIGTLMLPVAGKHNILDALAAIAL 286

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L       I++LS F   + R +R           +I + Y  +P  ++   + L  
Sbjct: 287 AFRLGIAPSEIIRSLSGFDGTKRRFERL----GTKNGAVIFDDYAHHPTEIQ---TTLDG 339

Query: 363 ISPHGEGRRI-AVL----GDMCE--MGELSQSF----HIDLAEVLSLYNISHVWLSGFHV 411
           +      RRI AV         E  + E S++F     + LA++ S    +    S    
Sbjct: 340 VRLCFPDRRIRAVFQPHTFSRTEKLLYEFSEAFSLADEVVLADIFSSARENKTCDSTVSS 399

Query: 412 LALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             L   +  + I   Y  T+D +  ++  +L +GD+V+   +     Y++  +L+
Sbjct: 400 SNLATLINQKGIDTKYFPTLDEISSYLGQTLQEGDLVITLGAGDI--YKVGQVLI 452


>gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
 gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
          Length = 501

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 161/476 (33%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVHH 286
           F+LLK  +    I TI ++G+S+ +++Q+             +      L          
Sbjct: 252 FDLLKETADLFQIPTI-TYGRSEESNYQV--IHSDKGTHGFTLSSRQDHLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A    +        G+  +   + G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDA---QAGLKEARVPGRMDQLIQSNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKG 474


>gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
 gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
          Length = 501

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 252 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 455

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 148/435 (34%), Gaps = 41/435 (9%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F A+ G   DG         + AG V V     A+   LS+P+    +   AL  LA  
Sbjct: 2   LFAALSGTKADG--MAYAKAAEAAGAVAVLAGETANAEGLSLPILRAAEPRRALALLAAR 59

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVP 150
                   I A+TG+ GKT+    L    ++     A +G+             +    P
Sbjct: 60  FYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGHDAASLGTIGIITNAGERPLSHTTPDP 119

Query: 151 LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           + L +   D     V     E     L + R     VR      T I   HL      E+
Sbjct: 120 VALHKALADLANEGVTHLALEASSHGLDQHRL--DGVRFSAGAFTNITRDHLDYHPTFED 177

Query: 206 IASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
             +AK  +F  L  +G    ++ D    + +   + A  +  + + G+ + A   L+  +
Sbjct: 178 YFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTARAKKL-DVMTVGE-RGAALCLKGVE 235

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +   +  + +  +G+   V+    G     N L++ G+   L +      +AL      +
Sbjct: 236 RDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGLALGLGSSAGGVFEALETLRGAK 295

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R            I   Y   P ++  A+  L    P+  GR   VLG     G+ 
Sbjct: 296 G---RLDYVGETSAGAPIFVDYAHTPDALVKALEALR---PYVTGRLHVVLGC---GGDR 346

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQ 438
            +    ++    +  N   V+++  +  +          +  +      +          
Sbjct: 347 DRGKRPEMGR-AATANADIVYVTDDNPRSEEPAAIRAAIMAAAPGATEIDGRADAIAIAI 405

Query: 439 SSLVDGDVVVV--KS 451
            +L  GD+++V  K 
Sbjct: 406 GNLERGDLLLVAGKG 420


>gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
 gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
          Length = 519

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 134/397 (33%), Gaps = 49/397 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVF 86
           GI  DSR I P   F   KG  +   +F+  A++ GA   +      A + ++  ++P  
Sbjct: 34  GIDHDSRIIEPGHVFVC-KGAAFKP-EFLKSALEAGAVAYLCAESHAAELEAIAPTVPAL 91

Query: 87  GV--DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140
               +++  A+ + +           T+I ITG+ GK+TT  ML   L      +  A +
Sbjct: 92  IATDENLRRAMAESSAYVTGHPDHGLTMIGITGTKGKSTTACMLRAILDGDEPYEKTAIM 151

Query: 141 GSY-----------NNHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRP 184
           GS            +N       L R   +           E+    L   R  T+ +  
Sbjct: 152 GSIEVFDGIEHGKPDNTTPEAPELWRHLANAQKCGLTYMAMEVSSQALKYDR--TYGLHL 209

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            IAV   I   H+S    S  E+   +K +IF+      T  +N +   +E + A   A+
Sbjct: 210 DIAVFLNIGRDHISPVEHSTFEDYFVSKMKIFDM---AKTAVINRNTEHYEDVMAHVRAV 266

Query: 243 GIKT------IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +       +Y+F   +  AD                      +  +     G     N
Sbjct: 267 HERNPECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTWTGHLSIPMPGLFNVDN 326

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + + ++L    +     L   H       R      +         Y  N  + + 
Sbjct: 327 ALAAITVANLLGFSGEKLQYPLLNTHVSG----RMELIPTKDRKVTALVDYAHNRLAYQK 382

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             S  SQ  P+    R  VLG    +G  +Q    DL
Sbjct: 383 LFSSSSQEFPNYG--RYVVLGA---VGGKAQERRRDL 414


>gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK49]
          Length = 459

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 129/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIVGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I  L     P IAVIT + P HL     +E+ A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIEAL----HPQIAVITNLMPTHLDYHGSLEDYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVMPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGRVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 382 KKMVILGQSAPRVKRAADQAGVSYLDATDVQDAAHKAFAQAEPGDIVLL 430


>gi|189347969|ref|YP_001944498.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium limicola DSM
           245]
 gi|229486479|sp|B3EIK7|MURC_CHLL2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189342116|gb|ACD91519.1| UDP-N-acetylmuramate/alanine ligase [Chlorobium limicola DSM 245]
          Length = 466

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 143/393 (36%), Gaps = 42/393 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV   D++LG L +             I I+G+ GKTTT  M+   L    ++
Sbjct: 85  AAEKAGIPVIKRDEMLGELMRYKYG---------ICISGTHGKTTTTAMIATMLMESGES 135

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +    +      T+      V  G + +  S   +  FL   + P IA++ ++   H
Sbjct: 136 PTVMIGGVSDYLGGSTV------VGEGKYMVIESDEYDRAFL--KLTPTIALVNSLESEH 187

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  +  +EE+ +A     + +   G +    D      +    +    +   +FG  ++A
Sbjct: 188 MDTYGTLEELKNAFIAFADKVPFYGRVICCVDWPEIRKIIPMLN----RRYTTFGIEEHA 243

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D            +   +   G   E V  H  G H   N L        L    +  I 
Sbjct: 244 DVMASDIVMEKNHTVFTITAFGSRYEGVRLHVPGRHNVLNALAAFSAGIELEIAPEKLI- 302

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +      G  +R++   + G   +I + Y  +P+ +KA +S     +   + R IAV 
Sbjct: 303 --AGLGCYSGMRRRFQIRYDNGRGLMIVDDYAHHPSEVKATVSAAK--NGWADSRIIAVF 358

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYN---ISHVW--------LSGFHVLALKDALPR--SI 422
                +   +  F  +    LS  +   I+ V+         SG +   + +A+ R    
Sbjct: 359 --QPHLFSRTLEFADEYGWALSRADSVIIAEVYPSREKAENFSGVNGNLVAEAVRRAGGK 416

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           HV Y E  + L   ++    DG++++   +   
Sbjct: 417 HVEYIEGRETLSGSLREHCSDGNMLLFMGAGDI 449


>gi|556014|gb|AAB40043.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 348

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 138/382 (36%), Gaps = 53/382 (13%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV      LG   K         K T +A+TG+ GKT+T  +L   + + K T   IG 
Sbjct: 1   IPVIRYHKFLGDYMK---------KFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGD 51

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                       +   + ++ +FE       E R      +P  A++T I   H   FS 
Sbjct: 52  G---------TGQGNENSEYFVFEA-----CEYRRHFLSYQPDYAIMTNIDFDHPDYFSS 97

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           I+++  A  E+   + K   I    DD     + A         +  +G  +  DFQ R 
Sbjct: 98  IDDVFDAFQEMALQVNKG--IIACGDDEHLPKIHANV------PVVYYGTGEENDFQARN 149

Query: 263 WKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             + +E +  +V ++    +       G+H   N L  + +      D      AL  F 
Sbjct: 150 IVKSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFG 209

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + R    +     G   LID+ Y  +P  +K  I    Q  P  E   +AV       
Sbjct: 210 GVKRRFNEKQL----GDQVLIDD-YAHHPTEIKVTIEAARQKYPDRE--IVAVF--QPHT 260

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----HVHYSETMDGLFLF 436
              +Q F  + AE LS      V+L      A ++A   +I      +H ++ ++     
Sbjct: 261 FTRTQQFLDEFAESLS--GADCVYLCDIFGSARENAGKLTIGDLQGKIHNAKLIEE---D 315

Query: 437 IQSSLVDGD--VVVVKSSNSCG 456
             S L   D  V++   +    
Sbjct: 316 DTSVLKAHDKAVLIFMGAGDIQ 337


>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           mutans UA159]
 gi|30316024|sp|Q8DVE3|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
           UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Streptococcus mutans UA159]
          Length = 451

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 129/383 (33%), Gaps = 44/383 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV      +IPV         L  L   A       II ITGS GKTTT  M+ 
Sbjct: 82  IPYTNPMVVRALEKNIPVI----TEVELAYLISEA------PIIGITGSNGKTTTTTMIA 131

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+   ++    G+          +A+   + D  + EL    L      T    PH+A
Sbjct: 132 DVLNHAGQSARLSGNIGFP---ASEVAQPVTEKDILVMELSSFQLMG----TESFHPHMA 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT + P H+      E    AK  I + + K   + LN++    + L  ++ A     I
Sbjct: 185 VITNLMPTHIDYHGSFENYIEAKWNIQKNMTKEDFLVLNFNQDLAKDLANQTQA----KI 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F   +  D          +   +  + Q           G H  +N L T+ +  +  
Sbjct: 241 IPFSTKEKVD------GAYLDGQMLCFKGQAIMSASELGVPGSHNVENALATIAVAKLSG 294

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +   + L  F   +    R +   N       ++S + N  + + A+S         
Sbjct: 295 VSNEAIRETLIHFGGVK---HRLQSLGNIAGVKFYNDSKSTNILATQKALSGFD------ 345

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY- 426
             + I + G   + G        D+        +  + + G     LK A  ++   +  
Sbjct: 346 NSKVILIAGG-LDRGNEFDELVPDI------KGLKKMIILGESAPRLKHAAVQAGVTYLN 398

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           ++ +             GDVV++
Sbjct: 399 AKDVAQATRIAFQEASPGDVVLL 421


>gi|69248544|ref|ZP_00604765.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257878422|ref|ZP_05658075.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257882840|ref|ZP_05662493.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257889379|ref|ZP_05669032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257894392|ref|ZP_05674045.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|258616059|ref|ZP_05713829.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium DO]
 gi|260560011|ref|ZP_05832189.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|261207887|ref|ZP_05922572.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289566955|ref|ZP_06447359.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|293559957|ref|ZP_06676465.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|293569017|ref|ZP_06680330.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|294623289|ref|ZP_06702154.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|314937785|ref|ZP_07845102.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|314941669|ref|ZP_07848549.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|314948916|ref|ZP_07852285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
 gi|314950965|ref|ZP_07854032.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|314992967|ref|ZP_07858363.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|314996414|ref|ZP_07861457.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|68194390|gb|EAN08897.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257812650|gb|EEV41408.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257818498|gb|EEV45826.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257825739|gb|EEV52365.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257830771|gb|EEV57378.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|260073846|gb|EEW62170.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|260078270|gb|EEW65976.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289161254|gb|EFD09150.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|291588450|gb|EFF20285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|291597317|gb|EFF28503.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|291606045|gb|EFF35471.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|313589396|gb|EFR68241.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|313592490|gb|EFR71335.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|313596820|gb|EFR75665.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|313599560|gb|EFR78403.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|313642816|gb|EFS07396.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|313644706|gb|EFS09286.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
          Length = 444

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 132/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +             T IA+TGS GKT+T  +L+  LS ++ T   IG    H     
Sbjct: 89  LEVIRYHDFIGHFIQNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGHGDPQA 148

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         E       E R       P  A++T I   H   ++ I+++ +A  
Sbjct: 149 --------------EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQ 194

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   ++K   IF   DD++   LKA         IY +G ++N D Q R  ++ +  S 
Sbjct: 195 TMAGQVKK--AIFAYGDDAYLRKLKANV------PIYYYGVTENDDIQARNIERTTSGSA 246

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N L  + +      D+    + +  F   +    R 
Sbjct: 247 FDVYHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVK----RR 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T++D+ Y  +PA +KA I    Q  P  E   IAV          + +   
Sbjct: 303 FSEKIVADMTVVDD-YAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMD 357

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L L     V+L               +  L   + +   V     +  L  +   
Sbjct: 358 EFAEALDL--ADKVYLCDIFGSAREEQGNVKIEDLGAKIKKGGEVIKENNVSPLLDY--- 412

Query: 440 SLVDGDVVVVKSSNSC-GFYRLINLLL 465
                 VV+   +     F +    LL
Sbjct: 413 ---HDAVVIFMGAGDVQKFEQAYEKLL 436


>gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
 gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
          Length = 457

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKNINHIKDTFKQFVRLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 EKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 336 HHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 395

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 396 KDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|317178903|dbj|BAJ56691.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F30]
          Length = 493

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 137/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHANPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   + +  L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKV-QLENILQATTIQGDLILF 485


>gi|257884456|ref|ZP_05664109.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257887239|ref|ZP_05666892.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257820294|gb|EEV47442.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257823293|gb|EEV50225.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 444

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 132/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +             T IA+TGS GKT+T  +L+  LS ++ T   IG    H     
Sbjct: 89  LEVIRYHDFIGHFIQNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGHGDPQA 148

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         E       E R       P  A++T I   H   ++ I+++ +A  
Sbjct: 149 --------------EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQ 194

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   ++K   IF   DD++   L+A         IY +G ++N D Q R  ++ +  S 
Sbjct: 195 TMAGQVKK--AIFAYGDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSA 246

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N L  + +      D+    + +  F   +    R 
Sbjct: 247 FDVYHGDEFVGHFTVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTFPGVK----RR 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T++D+ Y  +PA +KA I    Q  P  E   IAV          + +   
Sbjct: 303 FSEKIVADMTVVDD-YAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMD 357

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L L     V+L               +  L   + +   V     +  L  +   
Sbjct: 358 EFAEALDL--ADKVYLCDIFGSAREEQGNVKIEDLGAKIKKGGEVIKENNVSPLLDY--- 412

Query: 440 SLVDGDVVVVKSSNSC-GFYRLINLLL 465
                 VV+   +     F +    LL
Sbjct: 413 ---HDAVVIFMGAGDVQKFEQAYEKLL 436


>gi|75908537|ref|YP_322833.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
 gi|109892691|sp|Q3MAP8|MURC_ANAVT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75702262|gb|ABA21938.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
          Length = 494

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 149/395 (37%), Gaps = 46/395 (11%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L  P+    DVL AL          +    +A+ G+ GKTTT  M+   L    
Sbjct: 109 YQAAIELGCPILHRSDVLAALI---------NDYHSVAVAGTHGKTTTSSMIGYMLLEAG 159

Query: 135 -KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                 +G   N       L + P    + + E   S    ++       P I +IT I 
Sbjct: 160 LDPTIIVGGEVNAWEGNARLGQSP----YLVAEADESDGSLVKH-----APEIGIITNIE 210

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H  ++  +EE+        +G +   T+  + D +    L   + +   +   ++   
Sbjct: 211 LDHPDHYDTLEEVVDIFQTFAKGCK---TLIGSVDCATVRELLRTAASDRQQPTITYSLH 267

Query: 254 KN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADV 310
           ++  AD+ +      ++ +   V  +GK++ V+    +  H   N L  + +  ++  + 
Sbjct: 268 QDTEADYTVTNIDCRADGTTALVWEKGKALGVLKLKLLSRHNLSNALAAVAVGRLVGLEF 327

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               K ++ F   EG  +R+         T ID+ Y  +P+ ++A ++  +++      R
Sbjct: 328 GEIAKGIAGF---EGARRRFEFRGEVDGITFIDD-YAHHPSEIRATLAA-ARLQARPGQR 382

Query: 371 RIAVLG--------DMCEMGELSQSF-HIDLAEVLSLYNISH---VWLSGFHVLALKDAL 418
            +A+             E  E S+SF H DL  +  +Y+        +SG  +   +   
Sbjct: 383 VVAIFQPHRYSRTLTFLE--EFSESFSHADLVVLTDIYSAGEPNLGLISGEQL--AEKIA 438

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                V Y  T+  +  ++  +L  GD+ +   + 
Sbjct: 439 QEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLGAG 473


>gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
 gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
          Length = 467

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 148/426 (34%), Gaps = 48/426 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AV  G   +  +   + +  +  +PV    + L A           +   ++ + G+
Sbjct: 75  AAEAVVAG-SAIRADNPELQAARAAGLPVLHRSEALAA---------AMAGDRVVTVAGT 124

Query: 117 VGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GK+TT  M+T+ L       T+A   +        L +       D  + E   S    
Sbjct: 125 HGKSTTTSMVTVLLQGAGLDPTFAIGANVP-----SLGVNAASGTSDIFVAEADESDGSF 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           + +     RPHIAV+T + P HL  +   E +  +     E L   G +    DD     
Sbjct: 180 LNY-----RPHIAVVTNVEPDHLDYYGTAEAVYESFDSFTELLPADGVLVACADDPGARA 234

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  ++   G   + ++G +++A  +L           + V        +     G H A 
Sbjct: 235 LAERTRTRGNTRVVTYGTAEDAQLRLHD----GGPGDVWVSTGAGRFALDLQVPGRHNAL 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N      +   L    D A  AL+ F    G  +R+          + D+ Y  +P  ++
Sbjct: 291 NAAAAFAVALELGVAPDAASGALAHFS---GASRRFEFKGEGRGVRVYDD-YAHHPTEVR 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVW 405
           AA+   +         ++ VL     +   ++ F  D AE         VL +Y      
Sbjct: 347 AAL---AAARSVAGDHKVHVLFQ-PHLFSRTREFAADFAEALNAADTALVLDIYPAREDP 402

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--RLINL 463
           + G     + D L     +  +E        + ++   GD+V+   +     Y   ++  
Sbjct: 403 IPGVSSKLIGDRLSAGGRLVAAEDA---VRAVVANAAAGDIVLTAGAGDVTAYGPLIVEA 459

Query: 464 LLEEFP 469
           LL E P
Sbjct: 460 LLAEAP 465


>gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
 gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
          Length = 509

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 204

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 205 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 260 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 317 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 372 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 426

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 427 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 482


>gi|329849874|ref|ZP_08264720.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
 gi|328841785|gb|EGF91355.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
          Length = 475

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 148/420 (35%), Gaps = 43/420 (10%)

Query: 56  FILHA---VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           FI HA   V  G   +V +T +      +         ++     LA   RL+     IA
Sbjct: 63  FIGHATEHVSDGVCALVYSTAVKHDNPEMMEARRRRIPLVRRAEMLAELMRLQFS---IA 119

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  M+   L +           N  I           D D+ + E   S  
Sbjct: 120 VGGTHGKTTTTSMVACLLDAGGMD---PTVVNGGIINNYGTNAKVGDGDWIVVEADESDG 176

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +R     ++  +A++T I   HL ++   E +     +  E +   G   +  D    
Sbjct: 177 SFLR-----LKSTLAIVTNIDAEHLDHWGDFEAVKKGFVDFVENIPFYGFAAVCIDHPEV 231

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------HH 286
           + L AK      + +  +G S  A+ +        E +  +VQ     +E          
Sbjct: 232 QALAAKVEN---RRLIPYGVSPQAEVRCLNISFGPEGALFDVQFSPTGVEPFTWEKIRLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N    + I   L    D     L+ F   +   +R+          +ID+ Y
Sbjct: 289 MTGNHNVSNATAAIAIARELGVTEDAVRTGLAGFGGVK---RRFTTTGVVDGIRIIDD-Y 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLS 397
             +P  + A ++   Q+S   +G+ IAV        L D+  M E S  FH  D   V  
Sbjct: 345 GHHPVEIAAVLTAARQVS---QGKVIAVVQPHRYTRLRDL--MTEFSSCFHDADAVIVAD 399

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y+     + G    AL + L R  H +    +    L   + +    GD+VV   +   
Sbjct: 400 VYSAGETPIDGVSKTALVEGLHRFGHRNAVALDGPAALAGLVAAEARPGDLVVCLGAGDI 459


>gi|259419223|ref|ZP_05743140.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345445|gb|EEW57299.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 469

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 141/407 (34%), Gaps = 41/407 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              +  +PV    ++L  L +L            IAI G+ GKTTT  M+   +      
Sbjct: 89  EARARGLPVVRRAEMLAELMRLKSN---------IAIGGTHGKTTTTTMMAELM------ 133

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G ++  +     +     +   G  E  +    E     + +   IAV+T I P H
Sbjct: 134 --VAGGFDPTVVNGGIIHAYGSNARMGQGEWMVVEADESDGTFNRLPATIAVVTNIDPEH 191

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           + ++   + +     E    +   G      D +  + L  +   +  + + ++G +  A
Sbjct: 192 MEHWGDFDRLRDGFYEFVSNIPFYGLAVCCTDHAEVQALVGR---ISDRRVVTYGFNAQA 248

Query: 257 DFQLRKWKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           D +          +  ++ LQ  G+ +E       G H   N L  + +   L   +D  
Sbjct: 249 DVRAVNLTYKGGVAHFDILLQAEGQKIEGCTLPMPGDHNVSNALSAVAVCRHLGMKLDEI 308

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRI 372
             AL+ F       +R+         T+ID+ Y  +P  + A +    Q I   GEGR I
Sbjct: 309 RAALAAFGGVN---RRFTKVGEVDGVTIIDD-YGHHPVEIAAVLKAARQAIGSEGEGRVI 364

Query: 373 AVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           AV         LS  F          D+  +  ++      + G     L   L R  H 
Sbjct: 365 AV-HQPHRYSRLSSLFDDFCACFNDADVVAIAEVFAAGEDPIEGASRDDLVAGLIRHGHR 423

Query: 425 HYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           H       D L   ++     GD+VV   + +   +   N L E   
Sbjct: 424 HARAILNEDDLLRLVREQARPGDMVVCLGAGTISAW--ANGLPERLK 468


>gi|227551623|ref|ZP_03981672.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257895775|ref|ZP_05675428.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|293377610|ref|ZP_06623799.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
 gi|227179186|gb|EEI60158.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257832340|gb|EEV58761.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|292643610|gb|EFF61731.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
          Length = 444

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 132/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +             T IA+TGS GKT+T  +L+  LS ++ T   IG    H     
Sbjct: 89  LEVIRYHDFIGHFIQNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGHGDPQA 148

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         E       E R       P  A++T I   H   ++ I+++ +A  
Sbjct: 149 --------------EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQ 194

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   ++K   IF   DD++   L+A         IY +G ++N D Q R  ++ +  S 
Sbjct: 195 TMAGQVKK--AIFAYGDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSA 246

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N L  + +      D+    + +  F   +    R 
Sbjct: 247 FDVYHGDEFVGHFTVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTFPGVK----RR 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T++D+ Y  +PA +KA I    Q  P  E   IAV          + +   
Sbjct: 303 FSEKIVADMTVVDD-YAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMD 357

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L L     V+L               +  L   + +   V     +  L  +   
Sbjct: 358 EFAEALDL--ADKVYLCDIFGSAREEQGNVKIEDLGAKIKKGGEVIKENNVSPLLDY--- 412

Query: 440 SLVDGDVVVVKSSNSC-GFYRLINLLL 465
                 VV+   +     F +    LL
Sbjct: 413 ---HDAVVIFMGAGDVQKFEQAYEKLL 436


>gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC
           10712]
          Length = 463

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 145/419 (34%), Gaps = 44/419 (10%)

Query: 53  GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV      +   +A    L IPV    D L +L     A     
Sbjct: 60  GH--AAEHLADDASAVVVSSAIRADNPELARAAELGIPVVHRSDALASLMDGLRA----- 112

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML +AL+ +          +    +   LA    +   G  E
Sbjct: 113 ----IAVAGTHGKTTTTSMLAVALTELG--------LDPSYAIGGDLAGPGTNALHGDGE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E         P +A++  +   H +N++ ++EI  +       +   GT+ + 
Sbjct: 161 VFVAEADESDRSFQKYDPEVAIVLNVELDHHANYASMDEIYESFEAFTAKIRPGGTLVV- 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + +    L  +        I + G+S+++D ++ K      +S + V L G        
Sbjct: 220 GEHAGARELARRVADREGLDIVTVGESEDSDARILKIVPNGMKSEVTVALDGVEHTFTVS 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N    L   + +  D     +A        G G+R +         +I +SY
Sbjct: 280 VPGRHYAHNAAAALAAGARVGIDPAELAQA---LTAYTGVGRRLQLKGEAKGVQVI-DSY 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +   +     R + V      +   +Q    ++ + L+L + S V  
Sbjct: 336 AHHPTEMTADLEAMRGAAGA--SRLLVVF--QPHLFSRTQELGKEMGDALALADASVVLD 391

Query: 405 -------WLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   + G      +  A      V        +   +      GD+V+   +   
Sbjct: 392 IYPAREDPIPGITSELIIAAARQAGADVTAVHDKAAVPGVVAGMAGPGDLVLTMGAGDV 450


>gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 258

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGH+++  ++  
Sbjct: 16  MNLKKLEEVINGGGLHESFHHLEIHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDN 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 75  GAVASLWKKSYGTPPKG--VPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 132

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 133 DIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 182


>gi|94271504|ref|ZP_01291965.1| Cytoplasmic peptidoglycan synthetases-like [delta proteobacterium
           MLMS-1]
 gi|93450433|gb|EAT01623.1| Cytoplasmic peptidoglycan synthetases-like [delta proteobacterium
           MLMS-1]
          Length = 305

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 24/312 (7%)

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           M+   E       + P + ++T I   H+ +++ +E + +A  E    +   G   L  D
Sbjct: 1   MAEADESDGSFVRLSPVLEIVTNIDHEHVDHYADLEAVKAAFLEFINRIPFYGAAILCLD 60

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L         K + ++G S  AD Q R+       S  EV  + + + +V    
Sbjct: 61  DDNVTALLPMIR----KRVITYGLSSQADIQAREITTRGFISRFEVWSRQQRLGKVSLAV 116

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L     T  +A    +   G  +R +        T+ID+ Y 
Sbjct: 117 PGRHNVYNALAAIALGRELEIPFATIARA---LNNYSGVQRRLQVKGESDGITVIDD-YG 172

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-------QSFH-IDLAEVLSLY 399
            +P  ++A +   + +      RR+ VL         +        +FH  DL  + ++Y
Sbjct: 173 HHPTEIRATL---AALRAAWPRRRLVVLFQPHRYSRTAGLFQDFCTAFHDADLLILNNIY 229

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-- 455
                 +      AL  AL R     V Y   +  L   +   L  GDVV+   + +   
Sbjct: 230 AAGEAEIPEVAGDALALALRRHGQREVSYVPELADLPTAVLGRLQRGDVVLTLGAGNIWR 289

Query: 456 GFYRLINLLLEE 467
               ++  L E+
Sbjct: 290 AGEEILAALAEK 301


>gi|323488418|ref|ZP_08093665.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
 gi|323397925|gb|EGA90724.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
          Length = 437

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 163/472 (34%), Gaps = 82/472 (17%)

Query: 1   MNPLWTF-HDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY- 51
           M+PL    HD+ + +QG  I         + +  +  +  D+ +I       A  G  + 
Sbjct: 14  MSPLAQIMHDMGKQVQGSDIEQHFFTEDRLRERGITILPFDANNIEKDMTIIA--GNAFG 71

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D H  ++ A + GA                   +    + LG L +  V          +
Sbjct: 72  DDHPELVEARELGAT------------------IIRYHEFLGDLMRQYV---------SV 104

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GKT+T  ++   L   K     IG                 D  F + E     
Sbjct: 105 AITGAHGKTSTTGLMAHVLGGYKPVSYLIGDGTGVGQ---------EDSHFFVAEA---- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E R       P  A++T I   H   F+GI+++  A  E+ + ++K   I    DD +
Sbjct: 152 -CEYRRHFLAYHPDYAIMTNIDFDHPDYFTGIDDVFKAFEEMAQQVKK--CIIACGDDEY 208

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
            + ++A +       +  +G  +  DFQ R   +  + +  +V ++ +          G 
Sbjct: 209 LQQIQAPT------PVVYYGFGEENDFQARNIVKSVDGTTFDVVIRNEFFHTFKLPMFGD 262

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + +    +   D   +    F   + R  +   A       ++ + Y  +P
Sbjct: 263 HAILNALAVISLCHYESIPADIIQQQFEDFEGVKRRFTQTAIAD-----RILIDDYAHHP 317

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             ++A +    Q  P  E   IA+          +Q+F  + A+ L+     HV+L    
Sbjct: 318 TEIRATLQSARQKYPERE--LIAIF--QPHTFTRTQTFLQEFADCLTE--ADHVYLCDIF 371

Query: 411 VLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             A + A       L   I   +   +D +    +       V +   +   
Sbjct: 372 GSAREKAGTLKIQDLAEKIEGSHILQLDEVASLAEHG---NAVYLFMGAGDV 420


>gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
 gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
          Length = 501

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 252 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
 gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
          Length = 519

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 69/492 (14%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           PL T   L +A     I   P+     V G ++ ++ + P + F  + G    G DF   
Sbjct: 22  PLATL--LARA-GARLIADRPEAADLTVTGTTLRAQHVLPGDLFAGLPGARAHGADFSDQ 78

Query: 60  AVQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
           A+  GA  V+ +       ++    +PV    D   AL ++   +        +++ +TG
Sbjct: 79  ALAAGAAAVLTDPSGADRPALRDAPVPVLVHPDPRAALGEIAAWIYGEPSLHLSVLGVTG 138

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVD 159
           + GKTTT  ++   L +  +T   IG+    I                   L    +   
Sbjct: 139 TSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMLERG 198

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V     E+    L   R   +  R  +   T ++  HL     +EE  +AK+ +F+G   
Sbjct: 199 VTHVPMEVSSHALALGR--VNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDGRST 256

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQC--SEQSWMEVQ 275
           T  + +  D ++ + L             +      AD  ++    +     EQ++  + 
Sbjct: 257 TEVVVV--DSAWGQALL-------TPQTVTVSIEAGADALWRAADIEATPAGEQTFTLLG 307

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G S        G     N ++   I++    D D  +   +     E  G+  R  L 
Sbjct: 308 PDGLSRAAKIPLPGTFNVANAVLAAAILASAGIDADDIV---AGLAAVEVPGRMERVYLG 364

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q F  ++D  Y   PA++   +  L       EGR I VLG     G+   +    + E 
Sbjct: 365 QEFTAVVD--YAHKPAAVAQGLDALRA---RTEGRIITVLGC---GGDRDTAKRPMMGEA 416

Query: 396 LSLYNISHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSL 441
               +   + ++          A++ A+              V              S  
Sbjct: 417 AVRRS-DLLIVTDDNPRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLA 475

Query: 442 VDGDVVVV--KS 451
             GD+V++  K 
Sbjct: 476 GPGDIVLIAGKG 487


>gi|238503760|ref|XP_002383112.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Aspergillus
           flavus NRRL3357]
 gi|220690583|gb|EED46932.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Aspergillus
           flavus NRRL3357]
          Length = 497

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 144/419 (34%), Gaps = 55/419 (13%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V +     IPV    ++L +L +             IAI+GS GK+TT  M+   L +  
Sbjct: 103 VDAARDRRIPVIHRSEMLASLMRHH---------KSIAISGSHGKSTTTSMVAGMLEAGG 153

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            +   I           + A M       + E   S    +R     +   I+V+T I  
Sbjct: 154 LSPTTISGAVVTQYG--SNAHMGSGHWM-VVEADESDGTMVR-----LPALISVVTNIDS 205

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H++ +   E+  +  A+    +   G   L  DD     +  +      + I ++G S+
Sbjct: 206 DHITFYGTQEKTRATFAQFVRNVPFYGLAVLCIDDPGVRKILPEVQ---DRNIVTYGVSE 262

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +AD +    K   + S   + ++ +          +V   +G H  QN L T  I   L 
Sbjct: 263 DADVRAENVKYNPQDSTFVLSVRDRRDGTRRVVGSIVLSVLGLHNLQNALATTAIALELG 322

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++++   AL  F    G  +RY          +ID+ +  +PA +KA  ++  Q     
Sbjct: 323 IELESIRYALGSFQ---GTNRRYIHVGEANGIQIIDD-FGTHPAEIKATQTMAKQAGA-- 376

Query: 368 EGRRIAV-------------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
             R IAV             L +        +S HI + +      +  V  +G     L
Sbjct: 377 -RRVIAVYQPTVVVRNVEAWLEEYP--AAFEESAHIIIGQ-ADGVEVDPVP-AGEARETL 431

Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              L                L   +     +GD VV     S   +     L  +  A+
Sbjct: 432 VQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMGFRSSTLW--ARALAGQLKAL 488


>gi|118590891|ref|ZP_01548291.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
 gi|118436413|gb|EAV43054.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
          Length = 466

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 141/406 (34%), Gaps = 43/406 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    ++L  L +   A         IA+ G+ GKTTT  M
Sbjct: 74  SAIKKDNPELVAAREKLIPVVRRAEMLAELMRFKQA---------IAVGGTHGKTTTTSM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +       I      I    T ARM    D+ + E   S    ++     +   
Sbjct: 125 VAALLDAGGLDPTVIN--GGIINAYGTNARMGEG-DWMVVEADESDGTFVK-----LPAD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++T I P HL ++     + +A  +  E +   G   +  D    + +      +  +
Sbjct: 177 VAIVTNIDPEHLDHYGDFAGVRAAFRQFVENVPFYGFAVMCLDHPEVQTMIG---TIEDR 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLM 298
            + ++G +  AD +         +S   V L+ +    V           G H   N   
Sbjct: 234 RVVTYGANPQADVRYTDVSMDGGKSMFSVTLRDRRSGQVIELNNLTLPMPGLHNVSNATA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + S L    D   K ++ F   +   +R+      G   + D+ Y  +P  +KA + 
Sbjct: 294 AIAVASQLGVGADELRKGIAAFGGVK---RRFTHTGTVGGVQVFDD-YGHHPVEIKAVLH 349

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              +     +G+ IAV+       +     + S  F+  D   +  +Y      + G   
Sbjct: 350 AARE---STKGKVIAVMQPHRYTRLHSLFDDFSNCFNDADAVIIAPVYAAGEQPIEGAAH 406

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +    H  V   E  + L   I+     GD VV   + + 
Sbjct: 407 TDLVSGMKTRGHRNVQAIEGPEDLPALIKDLAEPGDFVVCLGAGNI 452


>gi|205374471|ref|ZP_03227267.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus coahuilensis m4-4]
          Length = 439

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 157/477 (32%), Gaps = 86/477 (18%)

Query: 7   FHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
            HD+   +QG  +         + +  +  +  ++ +I       A  G  + D H+ I 
Sbjct: 21  LHDMKVEVQGSDVEKYFFTQKNLEESGITILPFNADNIKEGLTVIA--GNAFSDNHEEIE 78

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + G                  +PV      LG   K         K T +A+TG+ G
Sbjct: 79  RAKELG------------------LPVIRYHKFLGEFMK---------KFTSVAVTGAHG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  +L   +S  K T   IG             +   D  + +FE       E R  
Sbjct: 112 KTSTTGLLAHVISGDKPTSYLIGDG---------TGKGTEDSQYFVFEA-----CEYRRH 157

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P  A++T I   H   F+ +E++ SA  E+   + K   I    DD   + ++ K
Sbjct: 158 FLSYHPDYAIMTNIDFDHPDYFADVEDVFSAFQEMALQVNKG--IIACGDDEHLQSIQTK 215

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                   +  +G  +  DFQ R        +  +V ++            G H   N L
Sbjct: 216 V------PVVFYGFGEENDFQARNITVDENGTTFDVFVRNTFYASFTISTYGKHNVLNAL 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +      D     + L      +    R      +G   +ID+ Y  +P  + A I
Sbjct: 270 GVIALCHYENIDTAVVQERLRTHKGVK----RRFTEKVKGSQVIIDD-YAHHPTEINATI 324

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD- 416
               Q  P+ E     V          +Q+F  D A+  SL     V+L      A ++ 
Sbjct: 325 DSARQKYPNRE----IVFVFQPHTFTRTQAFLTDFAD--SLRKADKVYLCDIFGSARENH 378

Query: 417 ------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLIN 462
                  L   I    + T +     +        VV+   +         + +L++
Sbjct: 379 GKLSIANLQEKIEGADTITAEDTSALLHH---KDAVVIFMGAGDVQKYQEAYEQLVD 432


>gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis N1568]
          Length = 445

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|254719461|ref|ZP_05181272.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. 83/13]
 gi|265984467|ref|ZP_06097202.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306839240|ref|ZP_07472057.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
 gi|264663059|gb|EEZ33320.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306405787|gb|EFM62049.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
          Length = 471

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +   A         +AI G+ GKTTT  + 
Sbjct: 75  AIKKNNPELVAAREKLLPVVRRAEMLAELMRFRRA---------VAIGGTHGKTTTTSLA 125

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L    +  T    G  N +     T ARM  D D+ + E   S    ++     +  
Sbjct: 126 AALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   + + +A  +  E +   G   +  D    + L ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE---D 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLM 298
           + I ++G +  A+ +    +     S  +V ++ +  E            G H   N   
Sbjct: 233 RRIITYGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D   + L  F   +   +R+    +     + D+ Y  +P  ++A + 
Sbjct: 293 AIAVAHELGISSDDIRRGLGSFGGVK---RRFTHTGSWNGVEIFDD-YGHHPVEIRAVLK 348

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              + +    GR +A++       +     E +  F+  D   V  +Y      + G + 
Sbjct: 349 AAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +  + H   HY+   + L   + S    GD VV   + + 
Sbjct: 409 EELVSRIKTAGHRDAHYATGPEALAPLVASIAQAGDFVVCLGAGNV 454


>gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 499

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 167/462 (36%), Gaps = 55/462 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +   + +  DSR +  +   F +KG      +++  ++      +V +      + +  +
Sbjct: 28  KRRFDDLQFDSRKVTKKNTLFVVKGAFK--IEYLTASLLDKISGIVTSRTEKIDLPN--L 83

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----Y 137
           P + V +   AL  L+         K  I+ ITG+ GKT++  M    L  +       +
Sbjct: 84  PHWIVSNSQIALAVLSAEFFVHPEKKLKILGITGTKGKTSSTYMAYSLLDRLTNHQTAMF 143

Query: 138 ACIGSYNNHIGVPLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183
           + I ++        +    P   +              + + E+       ++     + 
Sbjct: 144 STIDTFLGRGIKFKSELTTPESYELFSNMKKALDNGNKYLVMEVSS--QSYLKNRVFGIH 201

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +     I+P H+         +  + K  + E    +     N DD+  +     + +
Sbjct: 202 FKVGAFLNISPDHIGINEHPTFADYLAHKKMLAEN---SDVFVSNIDDAHGQEFIDHAKS 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G KT+ S  ++K AD      K   ++S   +  +G S E +    G     N  + + 
Sbjct: 259 FGAKTV-SVSENKKADVNFHIKKADLDESVFYLTEKGNSQEFLLDIPGVFNIYNASVAIA 317

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V  +    + A KAL+        G+  +         ++D  Y  N  ++   ++ L 
Sbjct: 318 MVREMGFKPEKAKKALAELQIP---GRMVKIKTKSHGLIIVD--YAHNGQAVTTLLTFLK 372

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG-FHVLALKD 416
               H  G+ I VLG   + GE  +S      EV+S + +   +L     G      + +
Sbjct: 373 S--QHQGGKIIIVLGSPGDKGEDRRS---QFGEVISKF-VDVAYLTTDDPGTEDPHQINN 426

Query: 417 ALPRSIHVHYSETMDGLF--LFIQSSLVD---GDVVVV--KS 451
            + ++I     E  + L     IQ+++      D+VV+  K 
Sbjct: 427 QIRKAISNPDVELHEELDRSKAIQAAIKKANTNDLVVLAAKG 468


>gi|114570627|ref|YP_757307.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
 gi|122315581|sp|Q0AMW8|MURC_MARMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114341089|gb|ABI66369.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
          Length = 468

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/428 (19%), Positives = 161/428 (37%), Gaps = 54/428 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GAG +VV++ +      L       IPV    ++L  L +L  A     
Sbjct: 61  GHK---AANVDGAGAIVVSSAIKPDNPELVAARAAKIPVVRRAEMLAELMRLKFA----- 112

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +A+ G+ GKTTT  ++ + + +       I      I    + A++ +     + E
Sbjct: 113 ----VAVGGTHGKTTTTSLVAVLMDAAGVDPTVIN--GGIISAYGSNAKVGLGDWMAV-E 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    ++  +      +A++T I P H+ ++   + +  A  +  E L   G   L 
Sbjct: 166 ADESDGSFLKLRS-----TVAIVTNIDPEHMEHYGTFDVLRQAFFQFVENLPFYGFAVLC 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSM- 281
            D    + L ++      + + ++G++  AD +L   K     +  +V+     Q +++ 
Sbjct: 221 TDHPEVQSLASRVE---DRRVITYGQNPQADARLENLKMDPSGATFDVRFRLRGQDETVW 277

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++    +G H   N +  L     L      A  AL  F   +   +R+          
Sbjct: 278 RDIFLPMMGEHNVLNAVAALATARELGLTEAGAKTALGQFGGVK---RRFTRTGEWKGAA 334

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-ID 391
           +ID+ Y  +P  + A +    Q +    G+ IAV        L D+ +  + S  F+  D
Sbjct: 335 IIDD-YGHHPVEIAAVLKAARQAAT---GKVIAVMQPHRYSRLHDLFD--DFSTCFNDAD 388

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK 450
              V  +Y      + G     L ++L    H    + T D +   +     +GDVVV  
Sbjct: 389 SVLVTPVYTAGEDPIEGADQAHLVESLRSHGHRDAGATTRDAVAADVAKRAGEGDVVVCL 448

Query: 451 SSNSCGFY 458
            +     +
Sbjct: 449 GAGDITLW 456


>gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
 gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
          Length = 255

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVINGGGLHESFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT- 122
           GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT  
Sbjct: 69  GAVASLWKKSYGTPPKG--VPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 123 --KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
             K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G
Sbjct: 127 DIKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 179


>gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           SM101]
 gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens
           SM101]
          Length = 457

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 133/358 (37%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +  + +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVKLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++G + N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 KKVMEVLEVAKC----NVLTYGIN-NGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +           ++ +
Sbjct: 336 HHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDCDEL-----VLMDI 390

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           Y      L   +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 391 YAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
 gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
          Length = 509

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 204

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 205 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 260 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 317 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 372 AHNYLSLKTLLKFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 426

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 427 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 482


>gi|294620347|ref|ZP_06699659.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
 gi|291593418|gb|EFF24980.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
          Length = 427

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 132/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +             T IA+TGS GKT+T  +L+  LS ++ T   IG    H     
Sbjct: 72  LEVIRYHDFIGHFIQNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGHGDPQA 131

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         E       E R       P  A++T I   H   ++ I+++ +A  
Sbjct: 132 --------------EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQ 177

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   ++K   IF   DD++   LKA         IY +G ++N D Q R  ++ +  S 
Sbjct: 178 TMAGQVKK--AIFAYGDDAYLRKLKANV------PIYYYGVTENDDIQARNIERTTSGSA 229

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N L  + +      D+    + +  F   +    R 
Sbjct: 230 FDVYHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVK----RR 285

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T++D+ Y  +PA +KA I    Q  P  E   IAV          + +   
Sbjct: 286 FSEKIVADMTVVDD-YAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMD 340

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L L     V+L               +  L   + +   V     +  L  +   
Sbjct: 341 EFAEALDL--ADKVYLCDIFGSAREEQGNVKIEDLGAKIKKGGEVIKENNVSPLLDY--- 395

Query: 440 SLVDGDVVVVKSSNSC-GFYRLINLLL 465
                 VV+   +     F +    LL
Sbjct: 396 ---HDAVVIFMGAGDVQKFEQAYEKLL 419


>gi|222086443|ref|YP_002544977.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
 gi|221723891|gb|ACM27047.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
          Length = 471

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 155/415 (37%), Gaps = 53/415 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  S   L+      +PV    ++L  L +   A         IAI G+ G
Sbjct: 67  AEVVVVSTAIKKSNPELAAAREKLLPVVRRAEMLAELMRFRNA---------IAIGGTHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L +       I      I    T ARM    ++ + E   S    ++  
Sbjct: 118 KTTTTSLVATLLEAGGLDPTVIN--GGIINAYGTNARMGEG-EWMVVEADESDGTFLK-- 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +AV+T I P HL ++   + + +A  +  E +   G   L  D    + L  +
Sbjct: 173 ---LPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCIDHPEVQSLVGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
                 + I ++G++  +D +    +    +S  +++++ +         ++V    G H
Sbjct: 230 IE---DRKIITYGENPQSDVRFSNVRIDGTRSLFDIEIRRRRTGKVIHIKDLVMPMPGRH 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + + + L    +   K L+ F   +   +R+          + D+ Y  +P 
Sbjct: 287 NISNATAAVAVANRLGISNEAIAKGLASFGGVK---RRFTLTGEWNGVKVFDD-YGHHPV 342

Query: 352 SMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNIS 402
            +KA +    +     +GR IAV        L  + E  E +  F+  D   +  +Y   
Sbjct: 343 EIKAVLKAAREA---CKGRVIAVHQPHRYTRLASLFE--EFAACFNDADSIFLAPVYAAG 397

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + G     L   +    H    Y  + + L   I      GD VV+  + S 
Sbjct: 398 EEPIEGVDSQELVSRIKAGGHRDARYLSSQEDLAPLIAEIAQPGDFVVLLGAGSI 452


>gi|50955148|ref|YP_062436.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|59798226|sp|Q6AE65|MURC_LEIXX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50951630|gb|AAT89331.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 464

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 152/425 (35%), Gaps = 38/425 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A   G    +V T  +            ++  L  L++    A L ++  ++A
Sbjct: 60  GHD----AANVGDADTLVVTGALWLDNPEYR--LALERGLPVLHRSQALAWLINRKRLVA 113

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTT+  M+   L  +    A     N  +   L  +      +  + E   S  
Sbjct: 114 VAGAHGKTTSTGMIVTGLLGLG---ADPSFVNGGVIASLGTSSRAGSGELFVVEADESDG 170

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + + T      +A+IT + P HL ++  +E    A     E  E    + ++ DD   
Sbjct: 171 SFLLYDTA-----VALITNVDPDHLDHYGSLEAFEDAFVAFAE--ESAELVVVSSDDPGA 223

Query: 233 ELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           + +  +   A   K + +FG++++AD ++             +              G H
Sbjct: 224 QQVTRRLRKAAPGKRVLTFGEAEDADIRVYSI-VTDGPVAFALSHDSDVYSACLRVPGRH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N      +++ L  +   ++ A++ F   E   +R+         ++ D+ Y  +P 
Sbjct: 283 NAINAAGAFALLTGLGFEPAASLAAIAEFGGTE---RRFELHGTVAGVSVYDD-YAHHPT 338

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE----------VLSLYNI 401
            + AA+S    +   G+GR IAV      +   ++ F  + AE          VL +Y  
Sbjct: 339 EVAAALSAARTV--VGDGRIIAV--HQPHLYSRTRLFAKEFAETLEAYADETVVLDVYGA 394

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 G     + D       V +                +GD V+         YR++
Sbjct: 395 REDPEPGVTGALVADLFAHPERVAFIADWQAAADHTAEIAREGDFVITLGCGDV--YRIV 452

Query: 462 NLLLE 466
             LL+
Sbjct: 453 PQLLD 457


>gi|302561121|ref|ZP_07313463.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478739|gb|EFL41832.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 195

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 11/190 (5%)

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L    +   L    D   +ALS          R          T++
Sbjct: 1   MTMRLYGEHHVSNALAAAAVAHELGMSADEIARALSEAGSLSRW--RMEVTERPDGVTVV 58

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +++YNANP SMKAA+  L  +      R  AVLG M E+G+ + + H  +  +    N+S
Sbjct: 59  NDAYNANPESMKAALRALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVS 116

Query: 403 HVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +   G        + A  +       VH S+        ++S L  GDVV+VK+S S G
Sbjct: 117 KLVAVGGREAAWLQLGAYNEGSWGEESVHVSD-AQAAVDLLRSELRPGDVVLVKASRSVG 175

Query: 457 FYRLINLLLE 466
              +   LLE
Sbjct: 176 LESVAQALLE 185


>gi|210134942|ref|YP_002301381.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
 gi|210132910|gb|ACJ07901.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
          Length = 493

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 136/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEVYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ L     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLLDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 RFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M  +I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLESI----RLASLHQGRKVIVTPGLVESNTES---NEALAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|99080524|ref|YP_612678.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
 gi|122984382|sp|Q1GIV0|MURC_SILST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|99036804|gb|ABF63416.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
          Length = 469

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 134/385 (34%), Gaps = 39/385 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV    ++L  L +L            IAI G+ GKTTT  M+   +          G 
Sbjct: 95  LPVVRRAEMLAELMRLKSN---------IAIGGTHGKTTTTTMMAELM--------VAGG 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           ++  +     +     +   G  E  +    E     + +   IAV+T I P H+ ++  
Sbjct: 138 FDPTVVNGGIIHAYGSNARMGQGEWMVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGD 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + +     E    L   G      D +  + L  +   +  + + ++G +  AD +   
Sbjct: 198 FDRLRDGFYEFVSNLPFYGLAVCCTDHAEVQALVGR---ITDRRVVTYGFNAQADVRAVN 254

Query: 263 WKQCSEQSWMEVQLQ--GKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  +  ++ LQ  G+ +E       G H   N L  + +   L    +    AL+ 
Sbjct: 255 LTYKGGVAHFDILLQAEGQKIEGCTLPMPGDHNVSNALSAVAVCRHLGMKREEIRTALAA 314

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDM 378
           F       +R+         T+ID+ Y  +P  + A +    Q I   GEGR IAV    
Sbjct: 315 FGGVN---RRFTKVGEVDGVTIIDD-YGHHPVEIAAVLKAARQAIGTEGEGRVIAV-HQP 369

Query: 379 CEMGELSQSF--------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-- 428
                LS  F          D+  +  ++      + G     L   L R  H H     
Sbjct: 370 HRYSRLSNLFDDFCACFNDADVVAIAEVFAAGEDPIEGASRDDLVAGLIRHGHRHARAIL 429

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSN 453
             D L   ++     GD+VV   + 
Sbjct: 430 NEDDLLRLVREQTRPGDMVVCLGAG 454


>gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 507

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 152/476 (31%), Gaps = 68/476 (14%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             + T HDLL+ I+             GIS DSR++ P   FF          +++  A 
Sbjct: 9   KAILTEHDLLKEIKSTKTVAN-----TGISYDSRTVKPGYMFFCKGNFKP---EYLSVAR 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           Q GA   V   +     G  +I V  V   +  L+        ++   II ITG+ GKT+
Sbjct: 61  QNGATTYVSENEYPEGTGMTAIIVTNVTRAMAVLSA-TYYNFPQNDLFIIGITGTKGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL----------TLARMPVDVDFGI------- 164
           +       L+        + S  + I  P           T   M +  D  +       
Sbjct: 120 SAYFAHSILNQKYPNQVALFSTIDRIVGPKPEDQFKSDLTTPESMNLFHDMRVAVDNGMK 179

Query: 165 -FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTG 221
              + +S    +R   + ++    +   I P H+        E+    K ++   +  + 
Sbjct: 180 YLVMEVSSQAYLRDRVYGLKFDCGIFLNITPDHIGRNEHKDFEDYLHCKLQL---MVNSK 236

Query: 222 TIFLNYD-DSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRKWKQCSEQSWMEVQLQ 277
              ++ D D F ++  A       + IY F    ++   DF ++  +     +   +   
Sbjct: 237 RCIIDADTDRFDDVFGAAKATTDPEQIYLFSADVENGGVDFLIQDEEDDLTSNRFTLVES 296

Query: 278 GKSMEVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               E  H       +  G +   N    +   ++       A+            G+  
Sbjct: 297 SSKAEAFHVAGDYDLNVAGDYNQSNATAAIIAAALADVTYQDAVLP---LKSIVIPGRME 353

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +       +D  Y  N AS+ A +  L     + +G+ I V+G     G+   S   
Sbjct: 354 HLNVPGHGVVFVD--YAHNYASLHALLKFLKH--QYHDGKVIVVVGSP---GDKGISRRA 406

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              + LS       +L+                    E  + +   I  ++  G V
Sbjct: 407 GFGQALSE-QADIAYLTTDDPA--------------FEDPEQIIQQIMDNIKPGTV 447


>gi|163790758|ref|ZP_02185184.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
 gi|159873938|gb|EDP68016.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
          Length = 442

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 38/290 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TGS GKT+T  +L   LSS+K T   IG    H            D DF I E    
Sbjct: 107 VAVTGSHGKTSTTGLLAHVLSSLKDTSYLIGDGTGHGV---------PDADFFILEA--- 154

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      RP  A++T I   H   +S I+++ +A   +   ++K   I    DD 
Sbjct: 155 --CEYRRHFLAYRPDYAIMTNIDFDHPDYYSSIDDVFNAFQSMAVQVKK--AIVACGDDE 210

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIG 289
             + ++A         I  +G   + DFQ +   + +  S  +V ++ +          G
Sbjct: 211 QLQKIQANV------PILYYGFGDHNDFQAKNMTRSTTGSTFDVYVRDEFYGHFDIPTFG 264

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I      D +  ++ L  F   + R    +         +I + Y  +
Sbjct: 265 KHNILNALSVIAICQYENIDKEGVMENLKTFKGVKRRFTEKQILDM-----VIIDDYAHH 319

Query: 350 PASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
           P+ ++A I    Q            PH   R +A+L D  E   L+ S +
Sbjct: 320 PSEIRATIDAARQKYPDKEIIAIFQPHTFTRTVALLSDFAESLNLADSIY 369


>gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
          Length = 481

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/494 (18%), Positives = 171/494 (34%), Gaps = 70/494 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QG           + IS DSR +  +  FF +KG  +   +F+L A+ +G  
Sbjct: 17  FREIIN--QGSYYYNYSDVDFDSISYDSRKVKERSLFF-VKGASFKK-EFLLSAISQGLD 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             +   D       + IP   V+D+  A++   +      + K  I+A TG+ GKTT   
Sbjct: 73  WYIAEQDY-----EVGIPAIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL---- 178
                L+   +    + + +  +      +    P  +D         H G    +    
Sbjct: 128 FAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVHNGRTHLIMEVS 187

Query: 179 --------THLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    + +   + V   I+P H+        E+    K  + E    +  + +N D
Sbjct: 188 SQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVVINSD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVHH 286
              F +LK +             + +  DF   +     E S        GK + +    
Sbjct: 245 MDHFSVLKEQV------------EDQEHDFYGNQSSNQIENSKAFGFSATGKLAGDYDIQ 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG+   +N +        L A ++   K ++        G+        G    ID  Y
Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAA---TRVPGRMEVLTQKNGAKVFID--Y 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+L
Sbjct: 348 AHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 407 SG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS-NSC 455
           +         +A+ + +   I   V      +       +      D V++  K +    
Sbjct: 402 TADDPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADR-- 459

Query: 456 GFYRLINLLLEEFP 469
             Y+++N + E +P
Sbjct: 460 --YQIVNGVKESYP 471


>gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
          Length = 493

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 123/389 (31%), Gaps = 47/389 (12%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH------AVQKGAGLVV 69
           G       +  V G++IDSR   P   F         G  F              A L  
Sbjct: 6   GVQAQATGEATVQGMTIDSRKAEPGCLFVCK------GAAFKPQYLGGALDAGAAAYLCD 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
              +   +      P    DDV  A+  LA     R   K  ++ ITG+ GK+TT  M+ 
Sbjct: 60  AAAEATLAQAYPQAPHIVTDDVRRAMALLAAVVFDRPDLKIDVVGITGTKGKSTTAYMMR 119

Query: 128 IALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVDFG-----IFELGMSH 171
             L +  +  + +GS            +N       L R   +         + E+    
Sbjct: 120 SILIAAGQEPSILGSIDTDDGVEHFESHNTTPEAPDLWRHLANTVEAGRSRMVMEVSSHG 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           L   R L   VR  I     I   H+S       E+   +K ++F     + T  +N + 
Sbjct: 180 LKYDRTL--GVRFAIGCFLNIGRDHISPVEHPTFEDYFESKLKLFAQ---SRTALVNLNS 234

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI 288
              + +   + A      +  G+  +AD+         +     V    G+   +V    
Sbjct: 235 DMADQVLEAAKASEQLVTFGVGRD-DADWNAADLAVEPQGIAFTVCTPTGERERIVLGMA 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N L  + +  +L    D     L+          R     +     +    Y  
Sbjct: 294 GLFNVENALAAVVMSRMLGVTWDDIRAGLAHVRVPG----RMEVVRSADGSVVALVDYAH 349

Query: 349 NPASMKAAISVLSQISPHGEGRR-IAVLG 376
           N  S K   +  S +     GR+ IAV G
Sbjct: 350 NELSFK---TFFSSVKEEYPGRKVIAVFG 375


>gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M0579]
 gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240149]
 gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis NZ-05/33]
          Length = 445

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +     D+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
 gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
          Length = 175

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 1/170 (0%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  +L+ A  G       +   +N + IDSR       FFAI G   DGH FI  A++ G
Sbjct: 5   SIEELVNATSGDLTSKSEEVTSINELVIDSRIANKNSVFFAIIGESLDGHKFINSAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              ++ N      I    + +  V++   AL  +A   + +     I ITGSVGKT+T++
Sbjct: 65  CKTIIKNKSNNFEIIGEDLNIIEVENTEFALGDIARYYKSKFDIPYIGITGSVGKTSTRD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           M+  A+SS  KT    G+ NN  GVPLTLA +    +  + E+GMS   E
Sbjct: 125 MVFSAVSSKFKTLKNTGNLNNQFGVPLTLANLDKSYECAVIEMGMSGFNE 174


>gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium DO]
 gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
 gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
          Length = 501

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 162/476 (34%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+S+ +++Q+   +         +      + +        
Sbjct: 252 FDLLRETADLFQIPTI-TYGRSEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLKFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|256545187|ref|ZP_05472553.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399228|gb|EEU12839.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 463

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 143/411 (34%), Gaps = 44/411 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N + + +   L IPV      LG L K             IA++GS GK+TT  M+
Sbjct: 79  AIAENNEELVAARKLDIPVVSRGVFLGGLMKNY--------KNSIAVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L +         + N  I +   L  +  +V  G  ++ ++   E +       P I
Sbjct: 131 SKILMN--------STKNPTILLGGDLDEIEGNVHVGDKDILVTEACEYKGNIRYYYPSI 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   HL  +  I +I            K     LN ++   +L+           
Sbjct: 183 GIILNIDEDHLDYYKDINDIVETFKFYLRNQSKDSKTILNLNEENNKLVIDAVQG----E 238

Query: 247 IYSFGKS-KNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++G+   +AD+               ++ ++   +E      +G H   N   ++   
Sbjct: 239 LITYGQDNPDADYNATNISFDESGKPRFDLIMKNGDVEHFELAILGRHNINNACASIIAT 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+ T            G  +R +   N     +I + Y  +P+ ++  ++ L++ 
Sbjct: 299 LESGVDIKTIK---KNIQSYTGLERRMQLMGNVNDCNIILD-YGHHPSEIQVNLNALAE- 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLAL 414
             H +GR I V          ++    +  +     +   I+ ++ +            +
Sbjct: 354 --HTKGRLICVW--QPHTYTRTKRLFNEFVKCFDEADEVIITDIFAAREPFDPSISSKDV 409

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            DAL        Y  T + +  ++ S +   D V+V  S      RL  ++
Sbjct: 410 VDALIKTGKSAKYIPTFEKVKEYLLSDIKKDDQVIVTGSGDS--DRLARMI 458


>gi|119358484|ref|YP_913128.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|166222971|sp|A1BJX7|MURC_CHLPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119355833|gb|ABL66704.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 466

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 133/395 (33%), Gaps = 46/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV   D++LG L +             + ++G+ GKTTT  M+   L    ++
Sbjct: 85  AAEQAGIPVIKRDEMLGELMRYNYG---------VCVSGTHGKTTTTAMIATMLIEAGES 135

Query: 137 -YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               IG  ++++     +        + + E        ++       P IAVI ++   
Sbjct: 136 PTVMIGGVSDYLKGSTVVG----SGKYLVIEADEFDRAFLKLT-----PTIAVINSLESE 186

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+  +  IEE+  A       +   G +    D      L    +    +   +FG  + 
Sbjct: 187 HMDTYGTIEELRKAFIAFANKVPFYGRVICCVDWPEIRKLIPHLN----RRYTTFGIDEP 242

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           AD           +S   V+  GK    V  +  G H   N L        L    +  I
Sbjct: 243 ADVMASDMVMDKNRSRFTVRASGKEYPGVSLNVPGRHNVMNALAAFASGLELGIAPERII 302

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              +      G  +R++   +     L+ + Y  +P+ +KAA+       P+ E   +AV
Sbjct: 303 ---AGLTRYSGMRRRFQIKYDNSAGVLVVDDYAHHPSEVKAAVKAARDGWPNAE--IVAV 357

Query: 375 LGDMCEMGELSQSFHID------------LAEVL--SLYNISHVWLSGFHVLALKDALPR 420
                 +   ++ F  +            +A++         +  +SG  V A       
Sbjct: 358 F--QPHLFSRTREFADEYGWALLRADKIYVADIYPSREKAADYPGVSGSLVAAAVHKA-G 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             H  +    + L+  +++      VV+   +   
Sbjct: 415 GKHAEFIADRELLYQTVETCPQKSTVVLFMGAGDI 449


>gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
          Length = 585

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/506 (17%), Positives = 158/506 (31%), Gaps = 68/506 (13%)

Query: 7   FHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              L +A I  H  G  P   V G+S+DSR + P + + A+ G    G  F   A++ GA
Sbjct: 34  AQALAEAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGA 93

Query: 66  GLVV---VNTDMVASIGSLSIPVFGVDDVLGAL---NKLAVAARLRSKATIIAITGSVGK 119
             V+       ++A  G   +PV  VD V  A              +   ++ +TG+ GK
Sbjct: 94  VGVLTDAAGRALLAGQGLADVPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGK 153

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLTL-------------ARMPVDVDFG 163
           TTT  +    L ++ +    +G+         VP TL                   VD  
Sbjct: 154 TTTSFLSAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTA 213

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    +   R     +R  +A  T +   HL     ++E  +AKA +F+   +T   
Sbjct: 214 VMEVSSHAVAYQRI--AGLRYAVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDP-ARTDHA 270

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK---------------NADFQLRKWKQCSE 268
            +  D                  + +                     AD+++ +      
Sbjct: 271 VITLDGGEGPRWGVAMARAAGAPVTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGL 330

Query: 269 QSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                ++    G+ +       G     N    L ++ +L A  +  + AL+        
Sbjct: 331 GHRFTLRHAATGRELRASVGLPGRFNVAN--AALAVLLVLHAVGEEHLDALAAVLDVPAG 388

Query: 327 GKRYRCALNQ-----GFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMC 379
                 A+       G        +  NP  M  A+  L  ++ +    GR + V G   
Sbjct: 389 EGPLAAAVPGRMEVVGREPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAG 448

Query: 380 EMGELSQSFHIDLAEVLS--------------LYNISHVWLSGFHVLALKDALPRSIHVH 425
           +     +     +A   +                 I    L+G    A + A      V 
Sbjct: 449 DRDRDKRPVMGAIAARAADVVIVTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVV 508

Query: 426 YSETMD--GLFLFIQSSLVDGDVVVV 449
             E  D               D +++
Sbjct: 509 IEEVADRFAAIRRAVELAGPQDGILL 534


>gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 961-5945]
 gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis G2136]
          Length = 445

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPRNELLEHVKTFQ---GLPHRVEKIGKKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAITGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|289422422|ref|ZP_06424265.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156994|gb|EFD05616.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
          Length = 451

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 144/375 (38%), Gaps = 37/375 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           +R     IA++G+ GKT+T  ML+   +  +K        +  I V   L+ +  +V  G
Sbjct: 98  MREYKNSIAVSGTHGKTSTTSMLSTIFNHAEK--------DPTILVGGNLSTIGGNVRIG 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E  ++   E         P I+++  I   HL  FSG++EI ++  +  + L + G  
Sbjct: 150 NSEHFITEACEYVDSFLNFNPFISLVLNIEEDHLDYFSGLDEIKASFNKFGKLLPEDGFF 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM- 281
            +N D    + +     A    ++  FG+    D  +          +   ++ +G ++ 
Sbjct: 210 IINGDSENTKDITFDVKA----SVIRFGQKDTNDAIISDISYDENGYARFNLKYKGAALG 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N    +    +   D+DT  +        +G G+R+          +
Sbjct: 266 RFDLSIYGLHNVYNATAAIVAAIVSNIDIDTIKEG---IKEYKGVGRRFEKKGEYKGALV 322

Query: 342 IDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFH-ID 391
           ID+ Y  +P  +KA ++    +          PH   R  A+        E SQ+FH  D
Sbjct: 323 IDD-YAHHPTEIKATLASAKNLKKDKMWVVFQPHTYTRTKALF------DEFSQAFHAAD 375

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              V  +Y          +   L ++L    +   Y  + D +  +++ ++   D+V+  
Sbjct: 376 KVIVADIYAAREQDPGDINSKMLVESLYTNHVDAIYLPSFDDITNYLRENVGPNDMVITC 435

Query: 451 SSNSCGFYRLINLLL 465
            +     +++ N LL
Sbjct: 436 GAGPI--FKVGNSLL 448


>gi|121611480|ref|YP_999287.1| UDP-N-acetylmuramate--L-alanine ligase [Verminephrobacter eiseniae
           EF01-2]
 gi|166224746|sp|A1WRL2|MURC_VEREI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121556120|gb|ABM60269.1| UDP-N-acetylmuramate--L-alanine ligase [Verminephrobacter eiseniae
           EF01-2]
          Length = 477

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/441 (20%), Positives = 154/441 (34%), Gaps = 55/441 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A  +GA  VV +T + A    +       IPV     +L  L +L        
Sbjct: 56  GH---AGAHIEGADAVVTSTAVTADNPEVLAARAKKIPVVPRALMLAELMRLKQG----- 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               IAI G+ GKTTT  ++T  L+         IG   N +G    L       D+ + 
Sbjct: 108 ----IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGRLNSVGAHAKLG----SGDYIVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +  L     P +AV+T I   H+  +      +  A  +    +   GT  
Sbjct: 160 EADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKGAFVDFLHRMPFYGTAI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----S 280
           L  D      +           I S+G S++A  +    +    +    VQ         
Sbjct: 215 LCVDSPAVRDIMPGVTC----PITSYGLSEDAQVRAVDLRADGARMHFTVQRSNGVTLPD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           + V  +  G H   N L  + +   L       ++AL+ F     R + Y +     G  
Sbjct: 271 LAVQLNLAGAHNVLNALSAIAVAVELNIPDAAVLRALAGFKGVGRRFQSYGQLPAKDGGQ 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + + Y  +P  M A +   +       GRR  VL         ++    D   V+   
Sbjct: 331 FSVIDDYGHHPVEMAATL---AAARGAFPGRR-LVLAFQPHRYSRTRDCFEDFVRVMGSA 386

Query: 400 NI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +    + V+ +G   +   D   L R++ V       +   +  L   I  +  DGD+++
Sbjct: 387 DAVLLTEVYAAGEAPVVAADGRSLARALRVAGRVEPVFVADVADLPQAIAENARDGDLLL 446

Query: 449 VKSSNSCGF--YRLINLLLEE 467
              + S G    +L+ +L  +
Sbjct: 447 CMGAGSIGAVPGKLLEMLRND 467


>gi|297621605|ref|YP_003709742.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376906|gb|ADI38736.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 447

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 137/402 (34%), Gaps = 38/402 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VV +TD+  S       V    ++    ++      L     ++A+ G+ GKTT+  
Sbjct: 62  AQTVVFSTDIKESNPEFQAAVKLRCEMQ---HRCGCLLNLMKNKDVLAVGGTHGKTTSSS 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L                I           +    + E   S     R+ +     
Sbjct: 119 LLAWVLEVCGF---SPSFAIGGIVANFKANGKAGEGSCFVAEADESDGTLARYRSFG--- 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T I   H+ +    E + +     F  ++     F   DD   + L  K      
Sbjct: 173 --AIVTNIGLDHMDHHQTEERLLNCFRTFFSKVQNEAFCFWCGDDKRLQTLNPKG----- 225

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
               S+G  +N   ++  ++Q    S  +V   GK   ++     G H A N     G+ 
Sbjct: 226 ---VSYGFHENNRLRVDHFRQVGWTSIFDVVFDGKRFADIEVLLAGEHHALNAAAVFGLS 282

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A      +AL  F   +G  +R      +     +D+ Y  +P  ++A +  + Q 
Sbjct: 283 LRLGAQESKIREALKTF---KGVARRCEVKGEKNGILFLDD-YAHHPTEIRATLKAIRQA 338

Query: 364 SPHGEGRRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
           SP    RRI  +            MG    +FH  D   V  ++      + G  V  + 
Sbjct: 339 SPD---RRIVAVFQPHRYTRTRDCMGMYGSTFHSADQVIVTDIHAAGESPIPGVEVCHIL 395

Query: 416 DALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L +  S+   Y    + L   +   L  GDVVV   + + 
Sbjct: 396 SELEKNSSVKCRYLP-REDLSCKLSKFLEKGDVVVTLGAGNI 436


>gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK355]
          Length = 459

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 133/383 (34%), Gaps = 44/383 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  + DMV       IPV         L  L   A       II ITGS GKTTT  M+ 
Sbjct: 91  IPYDNDMVVRALEKKIPVI----TEVELAYLISEA------PIIGITGSNGKTTTTTMIA 140

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L++  +     G+          +A+     D  + EL    L  I        P IA
Sbjct: 141 QVLTAGGQNGLLSGNIGFP---ASQVAQTASSKDTLVMELSSFQLMGIE----AFHPQIA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT + P HL     +EE A+AK  I + +     + LN++  + + + +++ A    T+
Sbjct: 194 VITNLMPTHLDYHGSLEEYAAAKWNIQKNMTADDYLVLNFNQDWAKEMASQAQA----TV 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F  ++  D          E   +  + +           G H  +N L T+ +  +  
Sbjct: 250 VPFSTTEKVD------GAYLEGDVLTFRGEAIMQAAEIGVPGSHNIENALATIAVAKLRG 303

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D  T  + LS F   +    R +           ++S + N  + + A+S         
Sbjct: 304 IDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAFYNDSKSTNILATQKALSGFD------ 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHY 426
             + I + G   + G        D+        +  + + G     +K A     +    
Sbjct: 355 NSKVILIAGG-LDRGNEFDELVPDI------KGLKKMVILGQSAPRVKRAADQAGVSYLD 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           +  +             GD+V++
Sbjct: 408 ATDVRDAAHKAFDQAKPGDIVLL 430


>gi|319899156|ref|YP_004159249.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
 gi|319403120|emb|CBI76678.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
          Length = 456

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 155/426 (36%), Gaps = 54/426 (12%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH    HA   GA  VV+             +     +PV    ++L  L +        
Sbjct: 39  GH----HAENLGAAEVVIISTAIKKTNPEYIAAKKRHLPVVKRAEMLAELMRFRR----- 89

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI G+ GKTTT  M+   L   +     I      I    T ARM  D D+ + 
Sbjct: 90  ----TIAIGGTHGKTTTTSMVAALLDVGRFDPIVIN--GGIINAYGTNARM-GDGDWMVV 142

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    ++     +   IAV+T I   HL ++     +  A  +  E +   G   +
Sbjct: 143 EADESDGTFLK-----LPADIAVVTNIDVEHLDHYGNFNALREAFRQFVENVPFYGFAVM 197

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSM 281
             D    + L ++ H    + + ++G +  AD +        ++ + ++ ++    G+  
Sbjct: 198 CLDHPEVQTLVSRIH---DRWVITYGANPQADVRFLNLSMEGQKMYFDILIRSQKTGEKT 254

Query: 282 EV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           E+   +    G H   N    + I   L    +   K L+ F   +   +R+    +   
Sbjct: 255 EINNLILPMSGKHNVSNATAAIAIAYELGVSPEAIKKGLAEFGGVK---RRFTKTGDWNG 311

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMG----ELSQSFH-ID 391
             + D+ Y  +P  +KA +    +     +GR IAV+       +     + S  F+  D
Sbjct: 312 VEIFDD-YGHHPVEIKAVLHAARE---SAKGRVIAVVQPHRYTRLYHLFDDFSACFNDAD 367

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  +Y      ++GF    L + +  + H  V    T++ +   + +    GD VV 
Sbjct: 368 TVMITPVYAAGEEPIAGFSSKELVEHIQMAGHRDVRLINTLEDVISIVSTLAKSGDYVVF 427

Query: 450 KSSNSC 455
             +   
Sbjct: 428 LGAGCI 433


>gi|57167794|ref|ZP_00366934.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli
           RM2228]
 gi|57020916|gb|EAL57580.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli
           RM2228]
          Length = 475

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 130/357 (36%), Gaps = 35/357 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-A 154
           NK     +   +  II IT S GKT+ K  L   L    KTY    S N  +G+   +  
Sbjct: 143 NKAKAKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINT 202

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D    I E G    G+I  +T  + P I ++  I  AHL  F  IE     K E  
Sbjct: 203 NLSDDTQIYIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEYFKNIENTRKTKLEAL 262

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                               L   +     + I  +      D +L+  +   +    ++
Sbjct: 263 NSKRLEKAF-----------LHTSTQKSEDELILLY------DDKLQDIQSSLQGLEFKI 305

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L+ K+ E     +G   AQN+   +   + L   ++   K +   +  E    R +   
Sbjct: 306 NLENKTYEFKSQILGDFNAQNLCACILCANYLGVKIEKIQKQVLKINSVE---HRLQIIS 362

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F +ID+S+N N   M A+      +  + +GR++ V   + E+    +  ++ LA+
Sbjct: 363 KEPKF-IIDDSFNGNYKGMSASYK----LCKNYKGRKVLVSPGIVEV---DKDENVKLAK 414

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           +++        ++        D   + + +     +    L   +       D+++ 
Sbjct: 415 IINEC-FDLAIIT---AQVNADIFKKELKIKTIILKEKADLVKVLAKETQQSDLILF 467


>gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacterium linens BL2]
          Length = 520

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 150/443 (33%), Gaps = 54/443 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL A  G   G  P+  V G+S DSR+++P + + A+ G +  G  F    +++G
Sbjct: 1   MRISQLLPAAPGTVHG-DPEREVGGVSHDSRTVSPGQLYAALPGANVHGAKFAPDLMERG 59

Query: 65  AGLVVVNTDMVASIGSLSIPV-------FGVDDVLGALNKLAVA-ARLRSKATIIAITGS 116
              ++ +      I +   P          V+     L  ++ A         +I +TG+
Sbjct: 60  ITAILTDAAGWDMISAAVDPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQLIGVTGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDV 160
            GKTTT  ++   L ++      IG+    I                +    A+M   DV
Sbjct: 120 NGKTTTTYLVDGMLEALGHRTGVIGTVATLIAGVREPSVRTTPEAPELHALFAKMRAADV 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D    E+    L + R         ++  T ++  HL   + ++E    KA++F     +
Sbjct: 180 DTCAMEVSSHALSQHR--VDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFTR-TFS 236

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-- 278
               +  +D + E +   +       + + G+   ++ +    +     S   + L G  
Sbjct: 237 DAAVIVVEDRWGEKMVEAAQV----PVRTLGRDDRSELR---IEHTPGVSDFILHLGGSA 289

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH-PKEGRGK-------R 329
            +++ +     G     N  +   ++      V         F     GR +       R
Sbjct: 290 DETIALRSPLPGDFNVTNTALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPR 349

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +          Y+  P +++ A++ L   S       + V G     G+  +   
Sbjct: 350 AEGQTHPERLPRAIVDYSHTPDAIEKALASLHADSEE----LVIVFGA---GGDRDRGKR 402

Query: 390 IDLAEVLSLYNISHVWLSGFHVL 412
             + +  +      + L+  +  
Sbjct: 403 YGMGQ-AAARGADVIVLTDDNPR 424


>gi|49474455|ref|YP_032497.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella quintana str.
           Toulouse]
 gi|59798260|sp|Q6G125|MURC_BARQU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49239959|emb|CAF26364.1| UDP-N-acetylmuramate--alanine ligase [Bartonella quintana str.
           Toulouse]
          Length = 475

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 146/405 (36%), Gaps = 43/405 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +        +     +P+    ++L  L +   A         IA+ G+ GKTTT  M+
Sbjct: 75  AIKKTNPEYIAAKEKHLPIVRRAEMLAELMRFRRA---------IAVGGTHGKTTTTSMI 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L + +     I      I    T ARM    D+ + E   S    ++     +   I
Sbjct: 126 AALLDAGRFDPMVIN--GGIINAYGTNARMGSG-DWMVVEADESDGTFLK-----LPADI 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I   HL ++     +  A  +  E +   G   L  D    + L ++   +  + 
Sbjct: 178 AVVTNIDREHLDHYGSFCAVREAFRQFVENVPFYGFAVLCLDHPEVQSLASR---IDDRW 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSME---VVHHGIGYHMAQNMLMT 299
           + ++G +  AD +        +++  +V ++    GK  E   +V    G H   N    
Sbjct: 235 VITYGTNPQADIRFLNLSMDGQKTHFDVFIRSRKTGKETELKNLVLPMSGQHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    ++  K L+ F   +    R            I + Y  +P  +KA   V
Sbjct: 295 IAIAHELGISNESIKKGLAEFGGVK----RRFTQTGSWRGIEIFDDYGHHPVEIKA---V 347

Query: 360 LSQISPHGEGRRIAVL--GDMCEMG----ELSQSFH-IDLAEVLSLYNISHVWLSGFHVL 412
           L       +GR IA++       +     + +  F+  D   +  +Y      ++GF   
Sbjct: 348 LYAARESAKGRVIAIVQPHRYSRLYHLFDDFAACFNDADTVLIAPIYGAGEAPIAGFGAR 407

Query: 413 ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L + +  + H  V     ++ + L + +    GD VV   + + 
Sbjct: 408 ELVEHIKMAGHRDVRLIHCLEDVVLIVSTFAKPGDYVVFLGAGNI 452


>gi|126658806|ref|ZP_01729950.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
 gi|126619904|gb|EAZ90629.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
          Length = 522

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 151/417 (36%), Gaps = 43/417 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +    A+      P+F   DVL AL +             IA+ G+ GKTTT  ++
Sbjct: 119 AIAHSNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTTTSSLI 169

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L         I             AR+     + + E   S     +       P+I
Sbjct: 170 GYMLLKAGVDPTIIVGGEVDAWEGN--ARIGAKGGYLVAEADESDGSLTKH-----YPNI 222

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T I   H  ++  ++++     +IFE   +   +    D          +  L    
Sbjct: 223 GIVTNIELDHPDHYQTLDDVVKTF-QIFE--TQCDLLIGCLDCETV------ATQLTPSI 273

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            YS   +K AD+ ++      + +  EV  +G+ + E+     G H   N L  + +   
Sbjct: 274 TYSLDSTKGADYTVKNIVSNHKGTTAEVWEKGRYLGEMRLTIPGSHNVSNALAAIAVGRK 333

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QIS 364
           L  D      AL  F    G  +R+    +    T ID+ Y  +P+ ++A +S    ++ 
Sbjct: 334 LGLDFGVIADALFTF---AGAKRRFEHRGHCNGITFIDD-YAHHPSEIEATLSAARCKVD 389

Query: 365 PHGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKD 416
                R +A+             + E +  F   DL  +  +Y+   V L       L +
Sbjct: 390 GENISRVVAIF-QPHRYSRTATFLKEFAACFKDADLVILTDIYSAGEVNLHNISGQDLAE 448

Query: 417 ALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           A+  +  HV Y  ++  L   +   L  GD+V+   +      ++I  ++ ++   +
Sbjct: 449 AIKHNHSHVIYEPSLKHLHQVLPDFLQSGDLVMFLGAG--NLNQIIPQVITQYETTE 503


>gi|239828070|ref|YP_002950694.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. WCH70]
 gi|259509774|sp|C5D6B2|MURC_GEOSW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239808363|gb|ACS25428.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. WCH70]
          Length = 433

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 128/359 (35%), Gaps = 43/359 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + + +   L +PV      LG   +         K T IA+TGS GKT+T  +
Sbjct: 68  NAFPETHEEIQAAHELGVPVIRYHRFLGEFLQ---------KFTSIAVTGSHGKTSTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   +  +  T   IG             +      + +FE       E R       P 
Sbjct: 119 LAHVMQGVHPTSYLIGDG---------TGKGIEGSKYFVFEA-----CEYRRHFLSYFPD 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   F+ I+++ SA  E+   ++K   I    DD + + ++AK       
Sbjct: 165 YAIMTNIDFDHPDYFANIDDVFSAFQEMALQVKKG--IIACGDDEYLQKIQAKV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +  +G   + DFQ R   + +E +  +V ++            G H   N L  + +  
Sbjct: 217 PVLFYGFGDDNDFQARNVVKTTEGTAFDVFVRNTFFASFEIPHFGDHNVLNALAVIALCH 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               DV    + L  F   +    R       G   LID+ Y  +P  + A I    Q  
Sbjct: 277 YEEMDVRIIQERLKTFQGVK----RRFSEKVLGNQILIDD-YAHHPREIIATIDAARQKY 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           P  E   +A+          +Q+F  + AE L       V+L      A +     SIH
Sbjct: 332 PGRE--IVAIF--QPHTYTRTQTFLREFAESLQQ--ADQVYLCDIFGSAREHHGKLSIH 384


>gi|167614199|gb|ABZ89703.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 478

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 160/420 (38%), Gaps = 51/420 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DF++      +  V+ N   + S    +IP+    ++L  L K           T IAI+
Sbjct: 80  DFVIK-----SSAVLSNNPEITSAKKYNIPILLRAEMLQILMKF---------KTGIAIS 125

Query: 115 GSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M+T   + S        G     I    TL        + I E   S   
Sbjct: 126 GTHGKTTTTSMITDICIRSRLNPTCINGGLIKSINSYATLG----SSRYFIVEADESDAS 181

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            +      + P IA++T I   H+ +++ ++++     +  + +   G   +  D+    
Sbjct: 182 FL-----YLNPTIAIVTNIESDHMDHYNSLQQLIETFLKFLKKIPIHGIAIICIDNFPIP 236

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            + +K        I ++G +KNAD ++  ++Q S   +  + +  K  + +  +  G H 
Sbjct: 237 NIFSKIKC----QIITYGFNKNADIRILCYRQHSFLGFFSLIVNKKIKLSIKLNIPGKHN 292

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESY 346
           A N    +          +  IK L  F     R +        +  +N     LID+ Y
Sbjct: 293 ALNAAAAVAFSLSQGLKTEDIIKTLKNFQGTARRFEYLGYLSITKDNINNKNSILIDD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LS 397
             +P  +   I  +    P  +   I +          + + + +  +V         L+
Sbjct: 352 GHHPTELSETIKTIRTSWP--KKNLIMIF--QPHRYTRTYNLYYEFIKVLVTVDTLLILN 407

Query: 398 LYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y+ +  ++SG +  +L   + +S  I +      + +   + S +   DV++++ + + 
Sbjct: 408 VYSANEKFISGANSYSLYQDIKKSGKIDITLISNNNFIMTTLLSKVTGNDVILIQGAGNI 467


>gi|329122143|ref|ZP_08250751.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
 gi|327466950|gb|EGF12466.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
          Length = 463

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 148/404 (36%), Gaps = 48/404 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIK 134
                 IPVF   D+L A+               I + G+ GK+TT  M+      +   
Sbjct: 84  EAKKHKIPVFHRSDLLAAILC---------GGKSICVAGAHGKSTTSAMIGKVFCDAEKH 134

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T    G  +      L    +  + +F I E   S    ++F      P I+VIT I  
Sbjct: 135 PTVVLGGKVDY-----LNGNSIFGNGEFVIAEADESDGSFLKF-----NPFISVITNIED 184

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            HL ++  +E I +A  +     +K  G   L  D+   + +  K   L   +  ++G S
Sbjct: 185 DHLDHYLTVENIKNAFIKFINQTDKINGNTILCIDNEGVKSILPK---LDENSYITYGTS 241

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            NA+++    +        +V  +   +  V     G H  +N L  L    I   D  T
Sbjct: 242 DNAEYKAINKRYIDSYMMFDVYHKESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKT 301

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +K+L  F+  +   +R++   +      I + Y  +P  + + +    +        R+
Sbjct: 302 IVKSLMEFNGVK---RRFQIKYS--GEVKIVDDYAHHPTEIMSTLKAAKE----CGKHRV 352

Query: 373 AVLGDMCEM-------GELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
                            E + +F + D+  +  +Y+     ++G     L D +      
Sbjct: 353 ICAFQPHRYSRTNLLKYEFANAFDNADIIFITDIYSAGEKPINGISGKMLVDLIKEKHPT 412

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + Y + M+ L   I++ +   D+++   + +   YR+   L+
Sbjct: 413 KTITYIKNMEDLPEAIKNEMQKDDMIITMGAGNI--YRVGEDLI 454


>gi|229825978|ref|ZP_04452047.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
 gi|229789720|gb|EEP25834.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
          Length = 469

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 147/413 (35%), Gaps = 53/413 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +         L IP+    + LG +      A        +A++G+ GKTTT  M
Sbjct: 78  AAIHADNPEFMEAKKLGIPMLERAECLGQIMSHYKNA--------VAVSGTHGKTTTTSM 129

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   L +       +G   + I   + L +     +  I E        + F      P
Sbjct: 130 LSYVYLEAELDPTISVGGILSGIHGNMRLGK----SENFIMEACEYADSFLHFT-----P 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +   HL  F  +E    +  +    L + G + +N +    E L    +    
Sbjct: 181 TTAIVLNVEAEHLDFFGTLENERLSFTKFINLLPENGLLVVNNEIEGLENLIQNKNI--- 237

Query: 245 KTIYSFGK----SKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLM 298
             I  +G      +  D+  +            E+ ++G++  +V     G H   N L 
Sbjct: 238 -RIIYYGLRPVNGREPDYTAKNITYNDFGFPSYELIVKGENKGLVELSVTGEHNVFNSLA 296

Query: 299 TLGIVSIL------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +               ++   +         G  +R++    +  +T++D+ Y  +P  
Sbjct: 297 VIAAALEPSSIYPKGIALEKIKQG---IKKYTGTDRRFQYKGERDGYTIVDD-YAHHPTE 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           ++A +    ++  +       ++     +   +++F  + A VLS+ +I   + ++ +  
Sbjct: 353 IRATLEAAKRVKHNR-----LIVAFQPHLYSRTKTFLHEFATVLSMADIVVFAEIYAARE 407

Query: 410 H------VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                     +++ +  + H  ++ +T + +  F+  +   GD+++   +   
Sbjct: 408 ENHHDISSDNIREIMSENGHEAYFFKTFEEVENFLIHTCKPGDLLITMGAGDI 460


>gi|296332043|ref|ZP_06874507.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675562|ref|YP_003867234.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150814|gb|EFG91699.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413806|gb|ADM38925.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 432

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 164/476 (34%), Gaps = 88/476 (18%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV--------NGISI-----DSRSIAPQEAFFAIK 47
           M+PL     +L        G   + F+          I+I     D  +I P     A  
Sbjct: 14  MSPL---AQILHDNGYTVQGSDIEKFIFTQTALEKRNITILPFSAD--NIKPGMTVIA-- 66

Query: 48  GPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           G  + D H  I  A+  G                  IPV      LG   K         
Sbjct: 67  GNAFPDTHPEIEKAMSDG------------------IPVIRYHKFLGDYMK--------- 99

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K T +A+TG+ GKT+T  +L   + + K T   IG             +   + ++ +FE
Sbjct: 100 KFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDG---------TGQGNENSEYFVFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R      +P  A++T I   H   FS I+++  A  E+   + K   I   
Sbjct: 151 A-----CEYRRHFLSYQPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQVNKG--IIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVH 285
            DD     + A         +  +G  +  DFQ R   + +E +  +V ++    +    
Sbjct: 204 GDDEHLPKIHANV------PVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G+H   N L  + +      D      AL  F   + R    +     G   LID+ 
Sbjct: 258 PAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQL----GDQVLIDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +K  I    Q  P  E   +AV          +Q F  + AE LS      V+
Sbjct: 313 YAHHPTEIKVTIEAARQKYPDRE--IVAVF--QPHTFTRTQQFLDEFAESLS--GADCVY 366

Query: 406 LSGFHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           L      A ++A   +I      +H ++ ++     +  +  +  V++   +    
Sbjct: 367 LCDIFGSARENAGKLTIGDLQGKIHNAKLIEEDDTSVLKA-HEKAVLIFMGAGDIQ 421


>gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
 gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
          Length = 499

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 166/459 (36%), Gaps = 55/459 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +  DSR +  +   F +KG      +++  ++      +V +     +I +  +P +
Sbjct: 31  FDDLQFDSRKVTKKNTLFVVKGAFK--IEYLTASLLDKISGIVTSRKEKINIPN--LPHW 86

Query: 87  GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----YACI 140
            V +   AL  L+         K  I+ ITG+ GKT++  M    L  +       ++ I
Sbjct: 87  IVSNSQIALAVLSAEFFGHPEKKLKILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTI 146

Query: 141 GSYNNHIGVPLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHI 186
            ++        +    P   +              + + E+       ++     +   +
Sbjct: 147 DTFLGRGIKFKSELTTPESYELFSNMKKALDNGNKYLVMEVSS--QSYLKNRVFGIHFKV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+         +  + K  + E    +     N DD+  +     + + G 
Sbjct: 205 GAFLNISPDHIGINEHPTFADYLAHKKMLAEN---SDVFVSNIDDAHGQEFIDHAKSFGA 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           KT+ S  ++K AD      K   ++S   +  +G S E +    G     N  + + +V 
Sbjct: 262 KTV-SVSENKKADVNFHIKKADLDESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVR 320

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A KAL+        G+  +         ++D  Y  N  ++   ++ L    
Sbjct: 321 EMGFKPEKAKKALAELQIP---GRMVKIKTKSHGLIIVD--YAHNGQAVTTLLTFLKS-- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG-FHVLALKDALP 419
            H  G+ I VLG   + G+  +S      EV+S + +   +L     G      + + + 
Sbjct: 374 QHQGGKIIIVLGSPGDKGKDRRS---QFGEVISKF-VDVAYLTTDDPGTEDPHQINNQIR 429

Query: 420 RSIHVHYSETMDGLF--LFIQSSLVD---GDVVVV--KS 451
           ++I     E  + L     IQ ++      D+VV+  K 
Sbjct: 430 KAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAAKG 468


>gi|88856513|ref|ZP_01131170.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
 gi|88814167|gb|EAR24032.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
          Length = 482

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 148/407 (36%), Gaps = 38/407 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A   G+   +V T  +       +    V+  +  L++    A L     ++A
Sbjct: 65  GHD----AAHLGSAAALVYTGALWPDNPEYLA--AVERGIPVLHRSQALAWLVGDTRLVA 118

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTT+  M+   L  +    A     N  +   L  +      D  + E   S  
Sbjct: 119 VAGAHGKTTSTGMIITGLRELG---ASPSFVNGGVIQGLGTSSGSGTDDLFVVEADESDG 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + + T      IA+IT +   HL ++   +    A  E       +  + ++ DD   
Sbjct: 176 SFLLYSTA-----IALITNVDADHLDHYGSHDAFDDAFVEFAS--RASDAVVVSSDDPGA 228

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             +   +  L    I +FG++++A  +L             V + G+   V     G+H 
Sbjct: 229 IRV---TQRLNHANIVTFGEAEDATVRLHSVTSEGP-VAFSVVVDGREERVQLSVPGHHN 284

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N    + +++ L  D+  AI A+S F    G  +R+         ++ D+ Y  +P  
Sbjct: 285 AVNATGAIAVLTGLGHDLGAAIDAVSTF---AGTQRRFELHAVVDGVSVYDD-YAHHPTE 340

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE----------VLSLYNIS 402
           ++AA+S    +   G G+ IAV      +   ++    + AE          VL ++   
Sbjct: 341 VEAALSGARSV--VGAGKLIAV--HQPHLYSRTRDMATEFAEVYERLADHTIVLDVFGAR 396

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + G     +         V +          +     +GD+V+ 
Sbjct: 397 EDPIPGVTGELVSSQFADPTRVDFVPDWQQAANRVAELAGEGDIVMT 443


>gi|308182899|ref|YP_003927026.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
 gi|308065084|gb|ADO06976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
          Length = 493

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 136/348 (39%), Gaps = 34/348 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    S   D+   ++  +   + +  E+ +     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLTDYSSLVKNIQSTLKGTSFEMLIGSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  +++   + +   +P   R +            +
Sbjct: 330 SFETKVLGKFNAYNIASAILIAKHLGLEIERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNIES---NETLAQKIDEV-F 437

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKNPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|322385905|ref|ZP_08059547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
 gi|321270084|gb|EFX53002.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
          Length = 455

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 131/384 (34%), Gaps = 46/384 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  N  MV       IPV         L  L         A II ITGS GKTTT  M+ 
Sbjct: 87  IPYNNPMVMRALEKQIPVI----TEVELAYLIS------DAPIIGITGSNGKTTTTTMIA 136

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L++  +     G+          +A+   + D  + EL    L  I        P IA
Sbjct: 137 EVLTAGGQNGLLSGNIGFP---ASQVAQDASETDTLVMELSSFQLMGIE----AFHPEIA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT + P HL      EE  +AK  I + +  +  + LN++    + L  K+ A     +
Sbjct: 190 VITNLMPTHLDYHGSFEEYVAAKWNIQKNMTASDYVVLNFNQDLAKELAKKTAA----KV 245

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F   +  D          +   +  + +           G H  +N L T+ +  +  
Sbjct: 246 LPFSTKEKVD------GAYLDGDVLTFRGEVIMKASELGVPGSHNVENALATIAVAKLRG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     + ++ F   +    R +           ++S + N  + + A+S         
Sbjct: 300 IDNQVIRETMAHFGGVK---HRLQYVGEINQVKFYNDSKSTNILATQKALSGFD------ 350

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             + I + G   + G        D+        +  + + G     +K A  ++  V Y 
Sbjct: 351 NSKVILIAGG-LDRGNEFDELVPDI------KGLKKMVILGESAARVKRAADQA-EVSYL 402

Query: 428 E--TMDGLFLFIQSSLVDGDVVVV 449
           +   +        S    GDVV++
Sbjct: 403 DASDVRDATRKAFSVAEPGDVVLL 426


>gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 452

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 131/368 (35%), Gaps = 39/368 (10%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  +D  +  L ++ +A  L S+A II ITGS GKTTT  M+   L++  ++    G+  
Sbjct: 90  VCALDKAISILTEVELAY-LVSEAPIIGITGSNGKTTTTTMIADVLNAGNQSALLAGNIG 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                   +A+     D  + EL    L      T   +PHIAVIT + P HL      E
Sbjct: 149 FP---ASEVAQAATAKDILVMELSSFQLLG----TEQFQPHIAVITNLVPTHLDYHGSFE 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRK 262
           +  +AK  I   +     + LN D    + L  K+ A  +     F   +  D  +    
Sbjct: 202 DYIAAKWRIQHRMTDKDYLVLNADQELVKSLAQKTKASPV----FFSTKEKVDGAYLADG 257

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +    E+  M                G H  +N L T+ +  +         K LS F  
Sbjct: 258 YLYFKEEQVMSA--------AELGLPGRHNIENALATIAVAKLRGISNQVISKTLSHFSG 309

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +    R +        T  ++S + N  + + A+S           R I + G   + G
Sbjct: 310 VK---HRLQLVGTLNQVTFYNDSKSTNILACQKALSGFD------NSRVILIAGG-LDRG 359

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL 441
                   DL        +  + L G     +K A     +    ++ +           
Sbjct: 360 NEFDELVPDLV------GLKKMILLGESAERMKRAADKAGVSYLDAKDVAAATKIAFEQA 413

Query: 442 VDGDVVVV 449
             GD++++
Sbjct: 414 KPGDIILL 421


>gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 299

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 100/284 (35%), Gaps = 29/284 (10%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLK 236
              IAV T I   HL     +EE  SAK+ +F  L      +K     +N DD       
Sbjct: 2   DFDIAVFTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFFI 61

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             + A     + ++G S++ADF     +     S   +    + +++     G     N+
Sbjct: 62  HSTAA----HVVTYGVSQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNV 117

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L      +I    +     AL   +   GR +  +    Q F  ++D  Y   P S++  
Sbjct: 118 LAAAASANISGVPLKNIKAALQSINGVSGRFE--QVEAGQDFSVIVD--YAHTPDSLENV 173

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
           +  +  I+       I V+G     G   ++    +AE+   Y    V+ S         
Sbjct: 174 LKTIETITDEN---VIVVVGC---GGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPN 227

Query: 412 LALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
             + D      H +Y   +D         S    GDVV++  K 
Sbjct: 228 AIIADMTTGLKHTNYIVIIDRQEAINHAVSLAGKGDVVLIAGKG 271


>gi|293556209|ref|ZP_06674799.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
 gi|294615651|ref|ZP_06695506.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291591480|gb|EFF23134.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291601628|gb|EFF31890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
          Length = 444

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 132/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +             T IA+TGS GKT+T  +L+  LS ++ T   IG    H     
Sbjct: 89  LEVIRYHDFIGHFIQNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGHGDPQA 148

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         E       E R       P  A++T I   H   ++ I+++ +A  
Sbjct: 149 --------------EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQ 194

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   ++K   IF   DD++   L+A         IY +G ++N D Q R  ++ +  S 
Sbjct: 195 TMAGQVKK--AIFAYGDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSA 246

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N L  + +      D+    + +  F   +    R 
Sbjct: 247 FDVYHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVK----RR 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T++D+ Y  +PA +KA I    Q  P  E   IAV          + +   
Sbjct: 303 FSEKIVADMTVVDD-YAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMD 357

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L L     V+L               +  L   + +   V     +  L  +   
Sbjct: 358 EFAEALDL--ADKVYLCDIFGSAREEQGNVKIEDLGAKIKKGGEVIKENNVSPLLDY--- 412

Query: 440 SLVDGDVVVVKSSNSC-GFYRLINLLL 465
                 VV+   +     F +    LL
Sbjct: 413 ---HDAVVIFMGAGDVQKFEQAYEKLL 436


>gi|257898345|ref|ZP_05677998.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|293571806|ref|ZP_06682822.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
 gi|257836257|gb|EEV61331.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|291608060|gb|EFF37366.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
          Length = 444

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 132/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +             T IA+TGS GKT+T  +L+  LS ++ T   IG    H     
Sbjct: 89  LEVIRYHDFIGHFIQNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGHGDPQA 148

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         E       E R       P  A++T I   H   ++ I+++ +A  
Sbjct: 149 --------------EFFSFEACEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQ 194

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   ++K   IF   DD++   L+A         IY +G ++N D Q R  ++ +  S 
Sbjct: 195 TMAGQVKK--AIFAYGDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSA 246

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N L  + +      D+    + +  F   +    R 
Sbjct: 247 FDVYHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVK----RR 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T++D+ Y  +PA +KA I    Q  P  E   IAV          + +   
Sbjct: 303 FSEKIVADMTVVDD-YAHHPAEIKATIDGARQKYPDKE--IIAVF--QPHTFTRTIALMD 357

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L L     V+L               +  L   + +   V     +  L  +   
Sbjct: 358 EFAEALDL--ADKVYLCDIFGSAREEQGNVKIEDLGAKIKKGGEVIKENNVSPLLDY--- 412

Query: 440 SLVDGDVVVVKSSNSC-GFYRLINLLL 465
                 VV+   +     F +    LL
Sbjct: 413 ---HDAVVIFMGAGDVQKFEQAYEKLL 436


>gi|317009250|gb|ADU79830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori India7]
          Length = 493

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 136/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +  + +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDNNSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ +     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLIDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 SFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLYKGRKVIVTPGLVESNTES---NEALAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|294101819|ref|YP_003553677.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
 gi|293616799|gb|ADE56953.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
          Length = 471

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 131/371 (35%), Gaps = 37/371 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           I I G+ GKTTT  M+ + L       T A IG     IGV   L   P  V        
Sbjct: 116 IGIAGTHGKTTTSSMIALILEQSGLSPTLA-IGGELCDIGVNAKLGEGPYMV-------- 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            + L E         P+IAV+T     H++++   + +  A        +  G + L  +
Sbjct: 167 -AELDESDGSFEGFHPNIAVLTNADWDHVNHYPTFDSVIEAFGRFLVNPKDDGVVVLCGE 225

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVV-HH 286
           D     +  ++H      + ++G     D+     +          V   GK ++ V   
Sbjct: 226 DVGLTRILDENHLKN--EVITYGWGSAWDWGAYNVEHVPGGGVSFSVAKNGKFVDEVKLS 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +   L        K L  F    G  +R +   +     + D+ Y
Sbjct: 284 VSGDHNIMNALAACVVADRLEVPFPLIKKTLKTF---RGAKRRLQYIGSTNGMDIYDD-Y 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--------- 397
             +P  + A ++ LSQ+ P    RR+ V+         + + + D A+VL          
Sbjct: 340 GHHPREIAATLNTLSQMFPE---RRLNVVFQPHRF-SRTAAMYKDFADVLLLADRLFLLP 395

Query: 398 LYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y      + G     +   L   +  +      M      ++ S+ +GDVVV   +   
Sbjct: 396 VYGADEEPIEGIDSNLIYSELQLRQYKNCILCSDMYDAVALLKESMEEGDVVVTVGAGDV 455

Query: 456 GFYRLINLLLE 466
               +  +L+E
Sbjct: 456 --SAVGEMLVE 464


>gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 497

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 159/483 (32%), Gaps = 55/483 (11%)

Query: 6   TFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+ Q I     G      Q  +  + ++S  +     F A+ G    G      A  
Sbjct: 4   TVLDVAQLIGARMQGGTAEQAQVPITEVGLNSAELPAGALFAAVPGTRVHG---ARFAAD 60

Query: 63  KGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVG 118
             A  ++ +       S    + PV  VDDV   L     AV     S+ T+I ITG+ G
Sbjct: 61  TAAAAILTDEAGWGLLSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDF 162
           KTTT  ML   L +       IG+    I                   L +  +   V  
Sbjct: 121 KTTTSYMLEAGLLAAGYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTH 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKT 220
            + E+    L   R L   V+  +A  T ++  HL   + + E   AKA  F      + 
Sbjct: 181 VVMEVSSHALMLGRVL--GVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRA 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +  DD + E + +     G++T+ + G++ +      +  +   Q +      G  
Sbjct: 239 ARAVVCVDDEWGEKMAS-VFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGSV 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G     N  + L +   +  D+   +            G+       Q F  
Sbjct: 298 VAATVPLPGRFNVANAALALALADTVGVDMTALLPG---LAGVGVPGRMEVVDCGQDFLA 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   PA++KA   VL+ +     GR   V+G     G+   S    +    +   
Sbjct: 355 VVD--YAHKPAAIKA---VLATVRGQITGRIGLVVGA---GGDRDHSKRPIMGAEAA-AG 405

Query: 401 ISHVWLSGFH----------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             +V ++  +             L      S  V            + +    GD V++ 
Sbjct: 406 ADYVVVTDDNPRNEDPAAIRAQVLAGTAAGSAEVVEIGDRRAAIRQVVAWAKPGDAVIIA 465

Query: 450 -KS 451
            K 
Sbjct: 466 GKG 468


>gi|254459232|ref|ZP_05072654.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
 gi|207084125|gb|EDZ61415.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
          Length = 481

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 134/347 (38%), Gaps = 36/347 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              I+AITGS GKT+ K  +T  LS+  + Y+   S N   G+   +   +P D +  I 
Sbjct: 159 DMQIVAITGSYGKTSIKNFVTEILSTKYRVYSTPRSVNTIGGIMRDINESLPSDTEIYIC 218

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +T  + P I V+  +  AHL  F  ++ I + K EI +   +    F+
Sbjct: 219 EAGARESGDIYEITTFLEPQIVVVGKVGEAHLEYFKSLKNIIATKLEIMQS-PRLMKAFI 277

Query: 226 NY---DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D+                 +  FG +      ++      + +  E++L    + 
Sbjct: 278 HSSVTDEPH-------------DKVTFFGDN------IQNMDATIDGTNFELKLGSDILT 318

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + +G     N+   + +            KA++   P E R ++       G   ++
Sbjct: 319 LHTNILGSFQTMNIEAAVNVAKSFGMSNSEITKAVAKLTPVEHRLQKIV----AGGKIIL 374

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+ YN N   M   I    ++    EGR++ V   + E    S   ++ L + ++     
Sbjct: 375 DDGYNGNIDGMLEGI----RLCSLHEGRKVIVTPGLVES---SDELNLKLIDAINEV-FD 426

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V ++G     L +   +  +         +   + S    GD+++ 
Sbjct: 427 IVIVTGALNATLFEKNIKVTNKTILHDKSKIQDVLASQTKAGDIILF 473


>gi|71891930|ref|YP_277660.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|109892692|sp|Q493Q0|MURC_BLOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71796036|gb|AAZ40787.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 480

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 137/384 (35%), Gaps = 46/384 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           + GH +        A ++VV++ +  +   +       IPV    ++L  L +       
Sbjct: 68  FIGHKYSNI---NNANVIVVSSAIHPNNPEILAAKQARIPVIKRAEMLSELMRFR----- 119

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IAI+G+ GKTTT  M+    ++           N  I     +        + I
Sbjct: 120 ----HGIAISGTHGKTTTTTMIVNIYTAAGLD---PTFINGGIVKSEGVHARLGYSRYLI 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTI 223
            E   S    +      + P + VIT I   H+       E +  A  +    L   G  
Sbjct: 173 VEADESDNSFLH-----LHPMVEVITNIDTDHIHEYQGNFEYLKKAFIDFLHNLPFYGYA 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
            +  DD     +  K      + I ++G +KNA+  +  ++Q  E+S   V +     ++
Sbjct: 228 IVCIDDPVICEILPKIK----RKIITYGFNKNANLHIFNYRQHIEKSSFTVSRFNQTKLQ 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQ 336
           V  +  G H A N    + + +         +K +  F     R +        +     
Sbjct: 284 VTLNAPGCHNALNATAAIAVATEEGISDKIILKTMLDFQGTHRRFENLGYYSLNKINDQT 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   LID+ Y  +PA + A I  +    P  + R + V           +  + D  +VL
Sbjct: 344 GEILLIDD-YGHHPAELHATIVAIRTGWP--DRRLVMVF--QPHRYTRIKELYYDFIDVL 398

Query: 397 SLYN---ISHVWLSGFHVLALKDA 417
           S  +   I HV+ +G   +   D+
Sbjct: 399 SNVDILLILHVYSAGEPPILGADS 422


>gi|307328984|ref|ZP_07608152.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
 gi|306885346|gb|EFN16364.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
          Length = 474

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 162/444 (36%), Gaps = 48/444 (10%)

Query: 44  FAIKGPHYDGHD-----FILHAVQKGAGLVVVNTDMVASIGSLSIPV---FGVDDV---- 91
            A++G    G D      +    + GA + + +     +  +  + V      D++    
Sbjct: 31  LAMRGARVSGSDTKDSPIVGALRELGATVHIGHAAGNIAADATGVVVSSAIRADNLELVT 90

Query: 92  -----LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                +  +++    A L   +  IA+ G+ GKTTT  ML ++L ++          +  
Sbjct: 91  AHERGIAVVHRSDALAALMDGSRPIAVAGTHGKTTTTSMLAVSLRTLG--------LDPS 142

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +   L         G  E+ ++   E     H   P +A+I  +   H +N++ ++EI
Sbjct: 143 YVIGGDLDAPGSSARHGDGEIFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMDEI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQ 265
            ++       +   G + ++ D S    L A+ S       + ++G+ ++AD ++   + 
Sbjct: 203 YASFETFVGRIRSGGALVISADQSGARELTARVSGGEEPPRVLTYGEDESADVRVLAIEP 262

Query: 266 CSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
               S + V+    L G  +       G H A N +  L   + L         AL+ + 
Sbjct: 263 HGLTSEVTVRLAESLGGAEITFTVSVPGRHYALNAVAALTAGAALGVPAGELAPALASYT 322

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +   +R +         +I +SY  +P  + A +  +      GEGR + V      +
Sbjct: 323 GVK---RRLQLKGTAAGVQVI-DSYAHHPTEIAADLEAIRG--GAGEGRVLVVF--QPHL 374

Query: 382 GELSQSFHIDLAEVLSLYNISHV---------WLSGFHVLALKDALPR-SIHVHYSETMD 431
              +Q    ++ E L+L + S V          + G     + DA  R    V      +
Sbjct: 375 FSRTQELGTEMGEALALADASVVLDIYPAREDPVPGITSGLVIDAAARHGADVTAEHDRN 434

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC 455
            +   I      GD+V+   +   
Sbjct: 435 AVPELIAGMAKPGDLVLTMGAGDV 458


>gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
 gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
          Length = 463

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV++ +      L       IPV    D L AL           
Sbjct: 60  GH--AAEHLADDASCVVVSSAIRQDNPELVRAAELGIPVVHRSDALAALMA--------- 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML ++L+++          N    +   L     +   G  E
Sbjct: 109 GLRPIAVAGTHGKTTTTSMLAVSLTALG--------LNPSYAIGGDLDAPGSNALHGTGE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E     H   P +A++  +   H +N++ ++EI  +       +   GT+ ++
Sbjct: 161 IFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYESFETFAGKIVPGGTLVIS 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      L  +    G     ++G+S +AD ++        +S + V L G  +     
Sbjct: 221 ADHDGARELTRRLA--GSVRTVTYGESADADVRVLSVVPQGLKSEVTVLLDGAELTFAVS 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L     L         AL+ +   +   +R +         +I +SY
Sbjct: 279 VPGRHYAHNAVAALAAGVALGIPAAELAPALAAYAGVK---RRLQLKGEAAGVQVI-DSY 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  +   +      RI V+     +   +Q    ++ + L+L + S V  
Sbjct: 335 AHHPTEMSADLEAMRAAAGDA---RILVVFQ-PHLFSRTQELGKEMGQALTLADASAVLD 390

Query: 405 -------WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC- 455
                   + G     + +A       V        +   +      GD+V+   +    
Sbjct: 391 IYPAREDPVPGVTSELIIEAARAAGADVTAVHDKAEVPDVVAGMAKAGDLVLTMGAGDVT 450

Query: 456 GFY-RLINLLLE 466
               R+++ L E
Sbjct: 451 DLGPRILDRLTE 462


>gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
 gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
          Length = 1288

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 151/434 (34%), Gaps = 64/434 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA---- 112
              A+ + A  V+          S +IP   V+        L V +R R+ A +IA    
Sbjct: 57  ADPALARAADCVI---------ASPAIPETHVERRAARRAGLPVKSRARALAEVIADRQT 107

Query: 113 --ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
             + GS GK+T   ML   LS+  +                  AR+       + E   +
Sbjct: 108 ICVAGSHGKSTVTAMLIHILSAAGQEDFGYMLGAAFADAARLPARLGAPDAPFVTEACEA 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H     +     +P +A++T +   H  ++ G+  +  A A+    L   G      DD 
Sbjct: 168 HGALAAW-----QPSLAILTNLDDEHADHYGGLPGLRRAVADFLSRLPPEGRAVACGDDP 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               L  ++         ++G   + D +              V L G  +  +     G
Sbjct: 223 QVLDLLRRARCAA----LTYGLGADNDLRA----VPDGTGGATVFLNGTDLGRLSLIVPG 274

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N L  LG+   L     TA  AL+ F    G  +R +         L D+ +  +
Sbjct: 275 RHNLRNALAALGMALTLGIGFATAAGALADF---PGLARRLQPVAPGNRLRLFDD-FAHH 330

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-----NISHV 404
           PA ++AA++VL + +   EGR IA+              H  +  + + +        H 
Sbjct: 331 PAEIEAALAVLRETT---EGRLIAIF---------EPQLHSRITLMAARFAQALGAADHS 378

Query: 405 WL-----------SGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-- 450
           +L           +G    AL +A     +   +   M  L   +Q+ L   + +VV   
Sbjct: 379 YLLPVVALGETAQAGNGDAALAEACRAGGLSCDHVSDMSELLARLQADLQGDETLVVMAG 438

Query: 451 SSNSCGFYRLINLL 464
            S +    R+   L
Sbjct: 439 GSGAAIAPRIAQAL 452


>gi|290580950|ref|YP_003485342.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
 gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
          Length = 451

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 129/383 (33%), Gaps = 44/383 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV      +IPV         L  L   A       II ITGS GKTTT  M+ 
Sbjct: 82  IPYTNPMVVRALEKNIPVI----TEVELAYLISEA------PIIGITGSNGKTTTTTMIA 131

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+   ++    G+          +A+   + D  + EL    L      T    PH+A
Sbjct: 132 DVLNHAGQSARLSGNIGFP---ASEVAQPVTEKDILVMELSSFQLMG----TESFHPHMA 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT + P H+      E    AK  I + + +   + LN++    + L  ++       I
Sbjct: 185 VITNLMPTHIDYHGSFENYIEAKWNIQKNMTEKDFLVLNFNQDLAKDLANQTQT----KI 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F   +  D          +   +  + Q           G H  +N L T+ +  +  
Sbjct: 241 IPFSTKEKVD------GAYLDGQMLCFKGQAIMSASELGVPGSHNVENALATIAVAKLSG 294

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +T  + L  F   +    R +   N       ++S + N  + + A+S         
Sbjct: 295 VSNETIRETLIHFGGVK---HRLQSLGNIAGVKFYNDSKSTNILATQKALSGFD------ 345

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY- 426
             + I + G   + G        D+        +  + + G     LK A  ++   +  
Sbjct: 346 NSKVILIAGG-LDRGNEFDELVPDI------KGLKKMIILGESAPRLKHAAVQAGVTYLN 398

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           ++ +             GDVV++
Sbjct: 399 AKDVAQATRIAFQEASPGDVVLL 421


>gi|50842246|ref|YP_055473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
 gi|59798222|sp|Q6A9Q1|MURC_PROAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50839848|gb|AAT82515.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
          Length = 471

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 139/406 (34%), Gaps = 35/406 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLT 179
             M+   L       + +      IG PL    M   +  G   + E   S    +++ +
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V     V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QIV-----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            + G   + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESTGTVRVVTYGESEQAEVRLVDLDLNGTTASATLVYGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFH 410
             ++   G+GR IA       +   ++ F  +    L          +Y      + G  
Sbjct: 354 ARRV-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 411 GELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           WUE 2594]
          Length = 445

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEYEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +     D+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
 gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
          Length = 509

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 164/472 (34%), Gaps = 62/472 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I+G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  IKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYK 204

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 205 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVHH 286
           F+LLK  +    I TI ++G+S+ +++Q+             +      L          
Sbjct: 260 FDLLKETADLFQIPTI-TYGRSEKSNYQV--IHSDKGTHGFTLSSRQDHLAICDTAYDIL 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A    +        G+  +   + G    +D  Y
Sbjct: 317 LAGGFNQENAASAIIAAALTGASSQDA---QAGLKEARVPGRMDQLIQSNGAHVYVD--Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 372 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLT 426

Query: 407 SG----FHVLALKDALPRSI-----HVHYS-ETMDGLFLFIQSSLVDGDVVV 448
           +          + + +  +I      VHY  +  + +   +  S     VV+
Sbjct: 427 ADDPAFEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTSQDSVVI 478


>gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
 gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
          Length = 481

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 170/496 (34%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH          + I  DSR    +  FF +KG  +   +F+L A+ +G G
Sbjct: 17  FREIID--QGHYHYNYSDVVFDTICYDSRKAKEKSLFF-VKGAAFKK-EFLLSAISQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IP   V D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMP-----VDVDFGIFEL 167
                LS      A + + N  +               + L  M       D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + +  DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQEHDFYGSQSSNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+       + +A+ D +   I   V              +      D V++  K ++
Sbjct: 399 VFLTADDPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E +P
Sbjct: 459 C---YQIVQGKKEAYP 471


>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
           influenzae F3031]
 gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3031]
          Length = 437

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 141/349 (40%), Gaps = 43/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+ ITGS GK+T   ++     +        G+          L+ +  D +  
Sbjct: 101 RTATKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H+  +  +E+   AK  I+         
Sbjct: 156 VLELSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN---AKVG 208

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKS 280
            LN +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  + 
Sbjct: 209 VLNNED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N+L    +   +  ++D+   AL  F   +G   R++ A +     
Sbjct: 262 AT----LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHHANGIR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +
Sbjct: 315 WINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I   +  G   + L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 365 I-ICYCFGRDGVQLAKFSSQS---YLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|17986863|ref|NP_539497.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23502301|ref|NP_698428.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis 1330]
 gi|62290323|ref|YP_222116.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700247|ref|YP_414821.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis biovar
           Abortus 2308]
 gi|148560387|ref|YP_001259323.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ovis ATCC 25840]
 gi|161619378|ref|YP_001593265.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella canis ATCC 23365]
 gi|163843686|ref|YP_001628090.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis ATCC 23445]
 gi|189024556|ref|YP_001935324.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225627881|ref|ZP_03785917.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225852912|ref|YP_002733145.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237815830|ref|ZP_04594827.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|254689624|ref|ZP_05152878.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 6 str.
           870]
 gi|254694114|ref|ZP_05155942.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697766|ref|ZP_05159594.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702151|ref|ZP_05163979.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|254704688|ref|ZP_05166516.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|254708102|ref|ZP_05169930.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|254710471|ref|ZP_05172282.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|254714464|ref|ZP_05176275.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M644/93/1]
 gi|254717362|ref|ZP_05179173.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M13/05/1]
 gi|254730655|ref|ZP_05189233.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 4 str.
           292]
 gi|256031965|ref|ZP_05445579.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|256045060|ref|ZP_05447961.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113983|ref|ZP_05454766.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|256160164|ref|ZP_05457858.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M490/95/1]
 gi|256255370|ref|ZP_05460906.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti B1/94]
 gi|256257874|ref|ZP_05463410.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|256263607|ref|ZP_05466139.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369846|ref|YP_003107357.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260169102|ref|ZP_05755913.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. F5/99]
 gi|260546865|ref|ZP_05822604.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260565341|ref|ZP_05835825.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260755152|ref|ZP_05867500.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260758371|ref|ZP_05870719.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260762197|ref|ZP_05874540.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884165|ref|ZP_05895779.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|261214414|ref|ZP_05928695.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|261219193|ref|ZP_05933474.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261222572|ref|ZP_05936853.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|261315605|ref|ZP_05954802.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261318043|ref|ZP_05957240.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261322254|ref|ZP_05961451.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261752721|ref|ZP_05996430.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261755381|ref|ZP_05999090.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|261758609|ref|ZP_06002318.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|265989074|ref|ZP_06101631.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|265991487|ref|ZP_06104044.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995325|ref|ZP_06107882.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998537|ref|ZP_06111094.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|297248710|ref|ZP_06932428.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306843223|ref|ZP_07475834.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|54037855|sp|P65469|MURC_BRUSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041505|sp|P65468|MURC_BRUME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75496536|sp|Q57C79|MURC_BRUAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892694|sp|Q2YLY6|MURC_BRUA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222961|sp|A5VRH6|MURC_BRUO2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028976|sp|A9M689|MURC_BRUC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028977|sp|B0CHL9|MURC_BRUSI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229486472|sp|B2S6Q3|MURC_BRUA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765986|sp|C0RE69|MURC_BRUMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17982501|gb|AAL51761.1| udp-n-acetylmuramate--alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23348277|gb|AAN30343.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis 1330]
 gi|62196455|gb|AAX74755.1| MurC, UDP-N-acetylmuramate--alanine ligase [Brucella abortus bv. 1
           str. 9-941]
 gi|82616348|emb|CAJ11405.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramate--ala [Brucella
           melitensis biovar Abortus 2308]
 gi|148371644|gb|ABQ61623.1| UDP-N-acetylmuramate--alanine ligase [Brucella ovis ATCC 25840]
 gi|161336189|gb|ABX62494.1| UDP-N-acetylmuramate--alanine ligase [Brucella canis ATCC 23365]
 gi|163674409|gb|ABY38520.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis ATCC 23445]
 gi|189020128|gb|ACD72850.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225617044|gb|EEH14090.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225641277|gb|ACO01191.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237789128|gb|EEP63339.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|256000009|gb|ACU48408.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260095915|gb|EEW79792.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260151409|gb|EEW86503.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260668689|gb|EEX55629.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260672629|gb|EEX59450.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675260|gb|EEX62081.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260873693|gb|EEX80762.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|260916021|gb|EEX82882.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|260921156|gb|EEX87809.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|260924282|gb|EEX90850.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261294944|gb|EEX98440.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261297266|gb|EEY00763.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261304631|gb|EEY08128.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261738593|gb|EEY26589.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|261742474|gb|EEY30400.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261745134|gb|EEY33060.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|262553161|gb|EEZ08995.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|262766438|gb|EEZ12227.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|263002271|gb|EEZ14846.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093658|gb|EEZ17663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|264661271|gb|EEZ31532.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|297175879|gb|EFH35226.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306286588|gb|EFM58165.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|326409454|gb|ADZ66519.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis M28]
 gi|326539160|gb|ADZ87375.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis M5-90]
          Length = 471

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +   A         +AI G+ GKTTT  ++
Sbjct: 75  AIKKNNPELVAAREKLLPVVRRAEMLAELMRFRRA---------VAIGGTHGKTTTTSLV 125

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L    +  T    G  N +     T ARM  D D+ + E   S    ++     +  
Sbjct: 126 AALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   + + +A  +  E +   G   +  D    + L ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE---D 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLM 298
           + I ++G +  A+ +    +     S  +V ++ +  E            G H   N   
Sbjct: 233 RRIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D   + L  F   +   +R+    +     + D+ Y  +P  ++A + 
Sbjct: 293 AIAVAHELGISSDDIRRGLGSFGGVK---RRFTHTGSWNGVEIFDD-YGHHPVEIRAVLK 348

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              + +    GR +A++       +     E +  F+  D   V  +Y      + G + 
Sbjct: 349 AAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +  + H    Y+   + L   + S    GD VV   + + 
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454


>gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 510

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 165/484 (34%), Gaps = 67/484 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WTF                + FV+ +S +S+ I     FF  KG ++   D+++ AVQ G
Sbjct: 27  WTF---------RLPNAFNKQFVDHLSYNSQDITKNTLFFC-KGLNFKK-DYLVDAVQNG 75

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTT 122
             + +                  V DV  A+    +A     ++K  +I  TG+ GKTT 
Sbjct: 76  LSIYISEQPYDVPADLG----IIVSDVKKAMAILSMAFYNYPQNKLKVIGFTGTKGKTTA 131

Query: 123 KEMLTIAL-SSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGI 164
                  L ++ K   A + +  + +               L L RM  +         +
Sbjct: 132 AYFAKSILTNATKGKTAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAVQNNMTHFV 191

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
            E+  S   +I    + +   + +   I P H+S       ++    K +I      +  
Sbjct: 192 MEVS-SQAYKIDR-VYQLFYDVGIFLNITPDHISPIEHPTFDDYFYCKRQIIAH---SKQ 246

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--- 279
           I LN +  +F+LLK  +    + TI  +G     +      K+  +     +  +     
Sbjct: 247 IILNRETDYFQLLKETADYFNVPTIV-YGNQPTTEVDYWYQKKSQDSLAFTIVAEKDFLF 305

Query: 280 -SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S +   H  G     N L  +   S+L A+       ++      G   R     N+  
Sbjct: 306 ISGDYQLHLAGDFNKSNALSAVIASSLLGANKKDCQTGINE-TIVPG---RMELLKNKNN 361

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +  + Y  N  S+   +S + Q   H  GR I V+G     G    S   D   VLS 
Sbjct: 362 AQVYID-YAHNYDSLYHLLSFVKQ--DHKNGRVIVVIGS---TGNKGISRRKDFGAVLSK 415

Query: 399 YNISHVWL----SGFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV 449
           +    +      +     A+   +  SI  +       +    +   ++ S     VV+ 
Sbjct: 416 FADIAILTMDDPADEDPKAICQEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLA 475

Query: 450 -KSS 452
            K +
Sbjct: 476 GKGA 479


>gi|320334251|ref|YP_004170962.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus maricopensis
           DSM 21211]
 gi|319755540|gb|ADV67297.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus maricopensis
           DSM 21211]
          Length = 462

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 146/428 (34%), Gaps = 42/428 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A  +G  ++V +  +      L+       +V     ++ +   L +    + 
Sbjct: 54  GHD---AAHVRGVDVLVASEAVPKDHPELTAAHAQGVEVQ---PRMRLLGELLAGGPSVG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  M+ + L+      A          VP   +   V     + E+  S  
Sbjct: 108 VIGTHGKTTTTSMIAVTLAGAGLDPAAFVGG----IVPEFGSNARVGAGPFVAEVDESDP 163

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-----IEEIASAKAEIFEGLEKTGTIFLNY 227
                         AV T     H+           E + +  A     + +   +    
Sbjct: 164 KFQELACG-----TAVFTNAEDDHIGGAGTAQATYWESVEAQHAAFARFVRQAERVLACA 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D    E     +  +G + + ++G   +  ++    +  +  +   V+ +G+ +      
Sbjct: 219 DWVDAEGRSLDALLVGAREVLTYGTGADCTYRAVDVRPDANGTSFTVERRGEVLGSARVR 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +  +  AD   A  AL+ F    G G+R++         +ID+ Y
Sbjct: 279 LPGTHNVLNGLAALAVADLHGADFPAAAAALAAFT---GPGRRWQHIGELNGALVIDD-Y 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--------FHIDLAEVLSL 398
             N   + AAI        H  GRR+ V+          QS           D   +L +
Sbjct: 335 AHNATKVAAAIEA-----AHQTGRRVRVVFQPHRYLRTQQSWPRLAQSLMGADEVLLLDI 389

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              S   + G H   + D +    H  V YS     +  +++ +   GDV+V   +    
Sbjct: 390 AAASEPPIEGIHATLISDRMREEGHAGVRYSPDRAQVVQYLRETAAPGDVIVTMGAGDV- 448

Query: 457 FYRLINLL 464
            +RL   L
Sbjct: 449 -WRLSREL 455


>gi|169829638|ref|YP_001699796.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus sphaericus
           C3-41]
 gi|229620041|sp|B1HX90|MURC_LYSSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168994126|gb|ACA41666.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus sphaericus
           C3-41]
          Length = 437

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 133/370 (35%), Gaps = 52/370 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GKT+T  ++   +   K T   IG                 + DF + E    
Sbjct: 104 IAITGAHGKTSTTGLMAHVVGGYKPTSYLIGDG---------TGAGHANADFFVMEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R       P  AV+T I   H   F+ IE++ SA   +   ++K   I    DD 
Sbjct: 152 --CEYRRHFLAYNPDYAVMTNIDFDHPDYFANIEDVYSAFQSLALQVKK--AIIACGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + ++AK        +  +G     DF+ R  ++ +E +  +V ++ +          G
Sbjct: 208 QLQRIQAKV------PVVYYGFGSENDFEARNVEKTTEGTKFDVFVRNEFYSTFFIPLFG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +        D     L  +   +    R     + G   LID+ Y  +
Sbjct: 262 DHAILNTLAVITLCEYEGISPDIIQDRLHTYKGVK----RRFTETDIGDNVLIDD-YAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---- 405
           P  ++A I    Q  P  E   +A+          +Q+F  D A+ LSL + +++     
Sbjct: 317 PTEIRATIQSARQKFPDRE--LVAIF--QPHTFTRTQAFLQDFADSLSLADTAYLCDIFG 372

Query: 406 ----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 G   +    +L     V  +E +D L          G V +   +        +
Sbjct: 373 SARETQGALSIQDLASLIEGSAVITTEGIDILTKH------QGAVFLFMGAGD------V 420

Query: 462 NLLLEEFPAI 471
           +   + F A+
Sbjct: 421 HKFQDAFEAV 430


>gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
 gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
          Length = 471

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 149/428 (34%), Gaps = 57/428 (13%)

Query: 56  FILHAVQKG-----------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           FI  A +             +  ++ N   + +  + ++P++    +L  L         
Sbjct: 54  FIGQAAENIPDNPAPDVVVTSTAILDNNPELIAAKARNLPIWHRARMLAQLG-------- 105

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 IAI G+ GKTTT  M+  AL  I    A        I           +  + +
Sbjct: 106 -VGKKTIAIAGTHGKTTTSSMVASALDGIG---ADPTFLIGGIVRAYHTNAHSGEGAYYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S           + P+  ++T +   HL +++ +EEI +   E    +   G + 
Sbjct: 162 VEADESDKSF-----TYLDPYAVLVTNVEADHLDHYNDLEEIHAKFTEFMSQVPDDGLLV 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--E 282
           +  DD     L A +     K + ++G ++ AD  +  W      S   ++L   ++   
Sbjct: 217 VCADDEVLVSLAAST----GKRMVTYGSAEGADAHIESWAPAGVGSTFTLKLPDGTLVEG 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V    G H   N   TL ++  +  D     ++LS F    G  +R+         T++
Sbjct: 273 SVKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNF---AGVRRRFDLVGEADGVTIV 329

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-----------MGELSQSF-HI 390
           D+ Y  +P  + A I+   ++    + +R+ VL                  E + +F   
Sbjct: 330 DD-YAHHPTEIAATIAAAKKL----DFKRVHVLFQPHRYSRVGLFTDVLRSEFAHAFDEA 384

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           D A  + +Y      + G +     D L  S     + Y          +   +  GD+V
Sbjct: 385 DTAAFMDVYPAGETPVPGVNGKTFLDVLKDSSSHPALVYIPHRLDTVSSLLDMVEAGDLV 444

Query: 448 VVKSSNSC 455
           +   +   
Sbjct: 445 LTMGAGDV 452


>gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK408]
          Length = 459

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +    
Sbjct: 172 MLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 VAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|297590727|ref|ZP_06949365.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|297575613|gb|EFH94329.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437804|gb|ADQ76875.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 444

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 154/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 60  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 159 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 214

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G  ++ D   +  +   + +  +V + G+  +       G
Sbjct: 215 HLRKIEADV------PIYYYGFKESDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 268

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 269 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 323

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 324 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 376

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 377 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 434

Query: 465 LEEF 468
           L++ 
Sbjct: 435 LDKL 438


>gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 425

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 133/375 (35%), Gaps = 36/375 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                   G    P+    D   AL ++A A   +  A  +A+TG+ GKT+T + L    
Sbjct: 1   PEGTDWPPGVPPRPLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIW 60

Query: 131 SSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           +      A +G+                   + +  TLA +       +     SH  E 
Sbjct: 61  TLAGDRAASLGTLGLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQ 120

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYD--DSFF 232
           R L   +R   A  + +   HL    G+   A+AK  +F+ L   G     N D      
Sbjct: 121 RRL-DGLRLTAAGFSNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEML 179

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E L+A +    ++ + + G++  A  +L +     +   +E+ L G+  E++    G   
Sbjct: 180 EALRAVARRRHLR-LATVGEAGEA-IRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQ 237

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+++  G+        D     L       G   R   A        +   Y   P +
Sbjct: 238 ADNVMLAAGLAVSAGMPADKVAGLLPRLTGVRG---RMELAARLPNGAAVYVDYAHTPDA 294

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----- 407
           ++  ++ L    PH EGR   V G   +     +    ++   L+     H  L+     
Sbjct: 295 LERLLTALR---PHAEGRLHVVFGAGGDRDGGKRPLMGEVCARLA----DHAILTDDNPR 347

Query: 408 GFHVLALKDALPRSI 422
           G    A++ A+   +
Sbjct: 348 GEDPAAIRAAVRAGM 362


>gi|315103158|gb|EFT75134.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA2]
          Length = 471

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 138/403 (34%), Gaps = 29/403 (7%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L       + +      IG PL    M   +  G   +  +   +  FL +  
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEVFVVEADESDGSFLQYPS 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 184 Q--IVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLA 413
            +  G+GR IA       +   ++ F  +    L          +Y      + G     
Sbjct: 357 -AVTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEM 413

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + DA L       Y      L   +   +  GD+V+   +   
Sbjct: 414 VHDAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|108563149|ref|YP_627465.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
 gi|107836922|gb|ABF84791.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
          Length = 493

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 HLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ L     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLLDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 RFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLHKGRKVIVTPGLVESNTES---NETLAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|188527417|ref|YP_001910104.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
 gi|188143657|gb|ACD48074.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
          Length = 470

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 138/349 (39%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+ K+ L   L +   T+A   S N  +G+   + + +    D  I 
Sbjct: 144 NLKVIAITGSFGKTSIKKFLLQILQTTFNTHASPKSVNTLLGLANDINQNLDDRSDIYIA 203

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 204 EAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 256

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D+   ++  +   + +  E+ +     
Sbjct: 257 ----------LEKAFCYSVEKINPYAPKDSPLIDYSSLVKNIQSTLKGTSFEMLIGSVWE 306

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 307 SFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 362

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ +     
Sbjct: 363 IDDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-F 414

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 415 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 462


>gi|56752359|ref|YP_173060.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81300550|ref|YP_400758.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
 gi|81561305|sp|Q5MZI0|MURC_SYNP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93141289|sp|P95836|MURC_SYNE7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56687318|dbj|BAD80540.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81169431|gb|ABB57771.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 478

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 158/440 (35%), Gaps = 61/440 (13%)

Query: 55  DFILHAVQKG-------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +F   AV  G       +  +  + +   +   L  PVF   D+L AL ++         
Sbjct: 67  EFFQEAVSAGQSPQVICSTAIHAHNEEYQAAIDLGCPVFHRSDLLAALLRVYE------- 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IA+ G+ GKTTT  ++   L          IG   N +G    L +        + E
Sbjct: 120 --SIAVAGTHGKTTTSGLIAYLLYQAGLDPTVVIGGEVNALGGNARLGQG----RHLVAE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    ++     ++  I +IT I   H  ++  +E + S      +   +   +  N
Sbjct: 174 ADESDGSLVK-----LQAAIGIITNIELDHPDHYCDLEAVISTFKTFSDNCSQ---LIAN 225

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
           +D             L     YS   ++ AD+ + +       +   +  +G+ +  +H 
Sbjct: 226 WDCPTVR------DRLPGTISYSLDPARGADYTVDQVSFRGSGTQARIWERGELLGRIHL 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +  H   N L  +     L  D  +  + L+ F   EG  +R+    +      +D+ 
Sbjct: 280 PLLEAHNLSNALAAIAACRHLGMDFASIREGLAGF---EGARRRFEFRGSAQGIQFVDD- 335

Query: 346 YNANPASMKAA-------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           Y  +P+ + A        I       P    R +A+          +Q+F  + A+    
Sbjct: 336 YAHHPSELAATLAAARLQIDSGCSRLPEVPKRLVAIF--QPHRYSRTQAFLAEFAQSFGP 393

Query: 399 YN---ISHVWLSGFH------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +   IS ++ +G           L DA+ +   +VHY+  ++ +   +   L  GD+ +
Sbjct: 394 ADLVLISDIYAAGERNPGQLSGQTLADAIAQYQANVHYAPDLEAVEQRLHQLLQPGDLAL 453

Query: 449 VKSSNSCGFYRLINLLLEEF 468
              +      ++I  LL+ +
Sbjct: 454 FLGAG--NLNQVIPRLLDHY 471


>gi|311069478|ref|YP_003974401.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus atrophaeus 1942]
 gi|310869995|gb|ADP33470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus atrophaeus 1942]
          Length = 432

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 160/474 (33%), Gaps = 84/474 (17%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSI----------APQEAFFAIKGP 49
           M+PL     +L        G   +  +    +++ R+I                 A  G 
Sbjct: 14  MSPL---AQILHDTGYTVQGSDIEKQIFTQAALEKRNIPILPFSADNIKAGMTVIA--GN 68

Query: 50  HY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            + D H  I  A+ +G                  IPV      LG   K         K 
Sbjct: 69  AFPDTHPEIEKALSEG------------------IPVIRYHKFLGDYMK---------KY 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+TG+ GKT+T  +L   +   K T   IG                 + ++ +FE  
Sbjct: 102 ISVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGDG---------TGMGNENSEYFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R      +P  A++T I   H   FS I+++  A   +   + K   I    D
Sbjct: 152 ----CEYRRHFLSYQPDYAIMTNIDFDHPDYFSNIDDVFDAFQNMALQVNKG--IIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHG 287
           D +   + A         +  +G  +  DFQ R   + +E +  +V ++    +      
Sbjct: 206 DEYLPKIHANV------PVVYYGTGEENDFQARNIVKNTEGTTFDVFVRNTFYDTFYIPA 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L  + +      DV+    AL  F   + R          G   LID+ Y 
Sbjct: 260 YGHHNVLNSLAVIALCHYEEIDVNIIKLALQSFGGVKRRFNEKIL----GDQVLIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +K  I    Q  P  E   +AV          +QSF  + AE LS      V+L 
Sbjct: 315 HHPTEIKVTIEAARQKFPERE--IVAVF--QPHTFTRTQSFLDEFAESLS--AADCVYLC 368

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS---LVDGD--VVVVKSSNSCG 456
                + ++ + +       E +D   L  ++    L   D  V++   +    
Sbjct: 369 -DIFGSARENIGKLTIADLQEKIDNAKLIDENDTSVLKAHDQAVLIFMGAGDIQ 421


>gi|208434651|ref|YP_002266317.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
 gi|208432580|gb|ACI27451.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
          Length = 470

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +  + +  I 
Sbjct: 144 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNNSEIYIA 203

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 204 EAGARNKGDIKEITLLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR------- 256

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ +     
Sbjct: 257 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLIDSVWE 306

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +    P   R +            +
Sbjct: 307 RFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEV----NQKII 362

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ +     
Sbjct: 363 IDDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NEALAQKIDGV-F 414

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 415 DVAIITGELNSKTIASQLKTPQKIL-LKDKSQLENILQATTIQGDLILF 462


>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
          Length = 237

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 81/239 (33%), Gaps = 32/239 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I     F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSV 117
           AV+ GA  ++V  D+        IP   V D   A+            +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVD 161
           GKTTT  +L   LS        +G+    +             P TL R        + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           + + E+    L             IAV T +   HL      +E    K+ +F  L   
Sbjct: 174 YCVMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGND 230


>gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
 gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
          Length = 178

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 3   PLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P W   ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+
Sbjct: 21  PFW---EVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAM 76

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             G        D+V +     +PV  V D L A+ +LA     + +  +IA+TGS GKTT
Sbjct: 77  ANGCQAAFWGQDLVDAP--QQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTT 134

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           TK+++   LS    TY   G+YNN IG+P T+ 
Sbjct: 135 TKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTIL 167


>gi|256061487|ref|ZP_05451631.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella neotomae 5K33]
 gi|261325494|ref|ZP_05964691.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
 gi|261301474|gb|EEY04971.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
          Length = 471

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +   A         +AI G+ GKTTT  ++
Sbjct: 75  AIKKNNPELVAAREKLLPVVRRAEMLAELMRFRRA---------VAIGGTHGKTTTTSLV 125

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L    +  T    G  N +     T ARM  D D+ + E   S    ++     +  
Sbjct: 126 AALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   + + +A  +  E +   G   +  D    + L ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE---D 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLM 298
           + I ++G +  A+ +    +     S  +V ++ +  E            G H   N   
Sbjct: 233 RRIITYGSNPQAEVRFANQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D   + L  F   +   +R+    +     + D+ Y  +P  ++A + 
Sbjct: 293 AIAVAHELGISSDDIRRGLGSFGGVK---RRFTHTGSWNGVEIFDD-YGHHPVEIRAVLK 348

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              + +    GR +A++       +     E +  F+  D   V  +Y      + G + 
Sbjct: 349 AAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +  + H    Y+   + L   + S    GD VV   + + 
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454


>gi|294852756|ref|ZP_06793429.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821345|gb|EFG38344.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 471

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +   A         +AI G+ GKTTT  ++
Sbjct: 75  AIKKNNPELVAAREKLLPVVRRAEMLAELMRFRRA---------VAIGGTHGKTTTTSLV 125

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L    +  T    G  N +     T ARM  D D+ + E   S    ++     +  
Sbjct: 126 AALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   + + +A  +  E +   G   +  D    + L ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE---D 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLM 298
           + I ++G +  A+ +    +     S  +V ++ +  E            G H   N   
Sbjct: 233 RRIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D   + L  F   +   +R+    +     + D+ Y  +P  ++A + 
Sbjct: 293 AIAVAHELGISSDDIRRGLGSFGGVK---RRFTHTGSWNGVEIFDD-YGHHPVEIRAVLK 348

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              + +    GR +A++       +     E +  F+  D   V  +Y      + G + 
Sbjct: 349 AAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +  + H    Y+   + L   + S    GD VV   + + 
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALTPLVASIAQAGDFVVCLGAGNV 454


>gi|197124214|ref|YP_002136165.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
 gi|196174063|gb|ACG75036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
          Length = 462

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 141/429 (32%), Gaps = 41/429 (9%)

Query: 31  SIDSR-SIAPQEAFFAIKGP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
             D R       A  A+         GHD    A   GA LVV +  +  +   +     
Sbjct: 36  VTDRRGEAELGGALAALPASVTRRLGGHD---PADFTGADLVVASPGVPLANPEI---QA 89

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                +    ++ +AAR      I+ ITG+ GK+TT  +    L+  ++T+  +G     
Sbjct: 90  ARRRGVAVWGEVELAARFLDGLPIVGITGTNGKSTTTALTGALLARDRRTF--VGGNLGT 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
               L L+  P D    + EL    L  I       R  +A +  + P HL  +  ++  
Sbjct: 148 PLSELVLSGEPADA--AVVELSSFQLEGIERF----RARVAAVLNVTPDHLDRYPDVDAY 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--K 264
           A+AKA +F   +       N  D     +   S A     +++FG    A    R    +
Sbjct: 202 AAAKARLFATQQPDDVAVANARDPRALAMAGASRA----DLHTFGFGAPAPASARDEGGE 257

Query: 265 QCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              E + +    +G++ E          G H  +N +  +    ++    +     L  F
Sbjct: 258 PGPEGTAIWFTPRGRAPERYQLRNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAF 317

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G   R            +++S   N  S    ++     +P    R + ++G   +
Sbjct: 318 ---PGLHHRLELVAEGRGVEWVNDSKATNVDSTFVGLAAFPSGAP----RVVLIMGGRGK 370

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
               +          L    +  +   G    A++  L           + G        
Sbjct: 371 KAPYAP------LRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPCGDLAGAVRRAAVL 424

Query: 441 LVDGDVVVV 449
              GDVV++
Sbjct: 425 SGPGDVVLL 433


>gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 129/347 (37%), Gaps = 36/347 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  I ITGS GKTTT  ++   L   +K     G+          +A+     ++ + 
Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGV---AACEVAQKAEANNWLVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  IR      RPHI+V+  I  AHL      E  A AKA IF+         +
Sbjct: 167 ELSSFQLAGIRDF----RPHISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVV 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVV 284
           N DD     L   S A   K I+S  K  ++   ++  W   ++++ + V          
Sbjct: 223 NADDELVMRLAENSCAQ--KVIFSATKKLDSGAYIKDGWIYWNDEAVIAVS--------D 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  + +  +   D     K L+ F   +    R +           ++
Sbjct: 273 IVLPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVK---HRLQYIATIDGRKFFND 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A+S   + S       + +L    + G    +       +  L+N+  +
Sbjct: 330 SKATNILATQRALSAFEKDS-------VILLAGGLDRGNEFDAL------LPYLHNVKAI 376

Query: 405 WLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     +     ++    + Y + ++            GDV+++
Sbjct: 377 ILFGQTAAKIARVAKQAGIETIEYVDNVEKAVPVAYQLSEPGDVILL 423


>gi|49483980|ref|YP_041204.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425853|ref|ZP_05602277.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428520|ref|ZP_05604918.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431153|ref|ZP_05607530.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433835|ref|ZP_05610193.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436752|ref|ZP_05612796.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904309|ref|ZP_06312197.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906134|ref|ZP_06313989.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909051|ref|ZP_06316869.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911365|ref|ZP_06319167.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914534|ref|ZP_06322320.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919502|ref|ZP_06327237.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924880|ref|ZP_06332546.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958488|ref|ZP_06375939.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503612|ref|ZP_06667459.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293537169|ref|ZP_06671849.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428310|ref|ZP_06820939.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|56749227|sp|Q6GFW8|MURC_STAAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49242109|emb|CAG40809.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271547|gb|EEV03693.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275361|gb|EEV06848.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278101|gb|EEV08749.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281928|gb|EEV12065.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284103|gb|EEV14226.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313246|gb|EFB43642.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317312|gb|EFB47686.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321715|gb|EFB52040.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325060|gb|EFB55370.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327315|gb|EFB57610.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331426|gb|EFB60940.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595927|gb|EFC00891.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790637|gb|EFC29454.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920014|gb|EFD97082.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095278|gb|EFE25543.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295127710|gb|EFG57347.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315195646|gb|EFU26033.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 437

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 154/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G  ++ D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKESDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|332366089|gb|EGJ43845.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1059]
          Length = 459

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   + D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASNKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +E  A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIE----AFHPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGRVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        S    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|306844329|ref|ZP_07476921.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
 gi|306275401|gb|EFM57142.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
          Length = 471

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +   A         +AI G+ GKTTT  ++
Sbjct: 75  AIKKNNPELVAAREKLLPVVRRAEMLAELMRFRRA---------VAIGGTHGKTTTTSLV 125

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L    +  T    G  N +     T ARM  D D+ + E   S    ++     +  
Sbjct: 126 AALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   + + +A  +  E +   G   +  D    + L ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE---D 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLM 298
           + I ++G +  A+ +    +     S  +V ++ +  E            G H   N   
Sbjct: 233 RRIITYGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D   + L  F   +   +R+    +     + D+ Y  +P  ++A + 
Sbjct: 293 AIAVAHELGISSDDIRRGLGSFGGVK---RRFTHTGSWNGVEIFDD-YGHHPVEIRAVLK 348

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              + +    GR +A++       +     E +  F+  D   V  +Y      + G + 
Sbjct: 349 AAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +  + H    Y+   + L   + S    GD VV   + + 
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454


>gi|257066466|ref|YP_003152722.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
 gi|256798346|gb|ACV29001.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
          Length = 462

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 141/398 (35%), Gaps = 42/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +   L++PV      LGAL        +R+    IA++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAAKKLNVPVVTRGVFLGAL--------MRNYKNSIAVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L    K        +  I +   L  M  +V  G  E  ++   E +       P  
Sbjct: 131 SKILMHSDK--------DATILLGGELDEMKGNVRVGSEEYLVTEACEYKGNIRYYYPQT 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   HL  +  +++I     E     ++      N ++    L+           
Sbjct: 183 LIILNIDEDHLDYYKDLDDIVDTFREYLSNQDENSMTITNLNEENNRLIFDSVKG----K 238

Query: 247 IYSFG-KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++  ++  AD+     K     +   +++++   +E      IG H   N + ++   
Sbjct: 239 LITYAQENDEADYCAFNIKFDEIGRPNFDLRMRNGDVEHFELGVIGRHNINNAMASIIAT 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                D++T           EG  +R +        T++ + Y  +P+ +K  +  L + 
Sbjct: 299 YENGIDIETI---RKNILKYEGLDRRMQIIGEVDDATIMTD-YGHHPSEIKVTLDALKEH 354

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  D     + S         +  +Y     +    H   +
Sbjct: 355 TKGRLICVWQPHTYSRTKALFDDFLTCFDSSDE-----VIITDIYAAREKFDPSIHSKDV 409

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            DAL  + I+  Y    +    +I   +   D+V+   
Sbjct: 410 VDALVKKGINAKYIGKFEDCRDYIYKEIKKDDLVLTTG 447


>gi|225017206|ref|ZP_03706398.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
 gi|224949981|gb|EEG31190.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
          Length = 457

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 123/353 (34%), Gaps = 39/353 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I ++G+ GKTTT  MLT  L    K   A IG     I               G  E+ +
Sbjct: 116 ICVSGTHGKTTTTSMLTQILLDAGKDPSAVIGGKLKSIEGYG---------RSGSSEVMV 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       + P IAV+  I   H+  F  +E +  +  +     + T  I  N DD
Sbjct: 167 CEACEFVDTFLHLSPDIAVVLNIDRDHMDYFKTMENLKLSFEKFCR--KATKCILYNGDD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV-HHG 287
           +    +  +      +   +FG S   D+     +      +  ++  +G+ +  +    
Sbjct: 225 ANSAEVAGRV----DQRKVTFGFSDQNDYYPANVQHVDGLHTTFDLMHKGERLTSLNLFV 280

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N               +   + L  F   +G G+R+         T++D+ Y 
Sbjct: 281 PGDHNILNATAACAAALETGVRPEQLAEGLGNF---KGAGRRFELLGKINGITIVDD-YA 336

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +PA +K  +     +          P    R   +L D  E   LS +  + L+E++  
Sbjct: 337 HHPAEIKVTLQAAQSLNFNKVWAVHQPFTYSRTAMLLDDFAE--ALSIADQVVLSEIMGS 394

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    G +   L D +   +   +  T + +  ++ S    GD+VV   
Sbjct: 395 R---EKNTYGIYAKDLADKIDGCV---WFPTFEEISDYVLSHAEPGDLVVTLG 441


>gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
 gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
          Length = 481

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 172/496 (34%), Gaps = 74/496 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH          + I  DSR    +  FF +KG  +   +F++ A+ +G G
Sbjct: 17  FREIID--QGHYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFKK-EFLISAISQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IP   V D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEEDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQEKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMP-----VDVDFGIFEL 167
                LS      A + + N  +               + L  M       D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  +   ++ +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLL---MKNSRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +               ++ DF   +     E S       +GK + + 
Sbjct: 242 NSDMDHFSVLKEQVA------------DQDHDFYGSQSDNQIENSKAFSFSARGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSN 453
           V+L+         +A+ D +   I+  V              +      D V++  K ++
Sbjct: 399 VFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGAD 458

Query: 454 SCGFYRLINLLLEEFP 469
               Y+++    E +P
Sbjct: 459 C---YQIVQGKKEAYP 471


>gi|283471006|emb|CAQ50217.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 437

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 154/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G  ++ D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKESDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINALEQFDNAVILFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|162148962|ref|YP_001603423.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545285|ref|YP_002277514.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189028992|sp|A9H0J3|MURC_GLUDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161787539|emb|CAP57135.1| putative UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532962|gb|ACI52899.1| UDP-N-acetylmuramate/alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 480

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 149/428 (34%), Gaps = 58/428 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   GA  VVV       +   V +  +  IPV    ++L  L +L  A    
Sbjct: 59  GHD----AANLGAAQVVVTSTAVRRDNPEVVAARARLIPVVRRAEMLAELMRLRWA---- 110

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  ++   L + +     I   N  I             D+ + 
Sbjct: 111 -----VAVGGTHGKTTTTSLIAAVLEAARLDPTVI---NGGIIEAYGTNTRMGSGDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   I V+T + P HL ++   E + +A  +    +   G   L
Sbjct: 163 EADESDGSFLR-----LPSVITVVTNMDPEHLDHWGTAEAMQAAYDQFVSNIPFYGFAVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + +  +   L    I ++G S  AD +  K       +  EV +  ++     
Sbjct: 218 CIDHPAVQQMIPR---LSDHRIVTYGFSPQADIRAEKVITDKLGATFEVVVTNRNRNRTR 274

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G+H  QN L  + +   +  D  T   A + F   +   +R+      G 
Sbjct: 275 RAGPFRLPMLGHHNVQNALAAIAVGVEMDIDDATLRSAFAGFRGVK---RRFTRTGETGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  + A +    Q         + PH   R   + G+ C     + +  
Sbjct: 332 ITVIDD-YGHHPVEIAAVLKAARQAGARDVIAVVQPHRYSRLQTLFGEFCTCMNDAGT-- 388

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
                V  +Y      + G    AL + L    H         + L   + +    GD V
Sbjct: 389 ---VIVADVYAAGEAPIPGVDRDALVEGLRERGHRSVVPLPDPEHLAEMVHAIARPGDFV 445

Query: 448 VVKSSNSC 455
           V   + S 
Sbjct: 446 VCLGAGSI 453


>gi|327458768|gb|EGF05116.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1057]
          Length = 459

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 129/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   + D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASNKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIE----AFHPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYIEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 VAEIGVPGSHNVENALATIAVAKLHGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        S    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQAEPGDIVLL 430


>gi|259047061|ref|ZP_05737462.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
 gi|259036111|gb|EEW37366.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
          Length = 443

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 145/433 (33%), Gaps = 79/433 (18%)

Query: 36  SIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           +I   +   A  G  + D H+ ++ A +KG                  I V      LG 
Sbjct: 60  NIKEGQIVIA--GNAFPDSHEELVAAREKG------------------IEVIRYHKFLGE 99

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L K             +AITGS GKT+T  +L   LS ++ T   IG             
Sbjct: 100 LLK---------NYKSVAITGSHGKTSTTGLLAHVLSGMEPTSYLIGDG---------TG 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +     +  + E        + +     RP  A++T I   H   ++ I+++ SA     
Sbjct: 142 KGVESSEHFVLEACEYKRHFMAY-----RPDYAIMTNIDFDHPDYYTDIDDVQSAFEAFG 196

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + ++K   I    DD     L+A      I  +  +G  ++ D   +  ++    S+ + 
Sbjct: 197 KQVKKG--IIACGDDERLRTLEA------IVPVTYYGVGEHNDVIAKNIRKEKAGSYFDA 248

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + G+          G H   N L  +    +   D +   +    F   +    R    
Sbjct: 249 YIHGELYGHFYIPTYGDHNILNALAIIAFYYLNQLDPNELAQQFRTFSGVK----RRFSE 304

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383
                 T+ID+ Y  +P+ ++A +    Q            PH   R IA+L +   +  
Sbjct: 305 KVINGVTVIDD-YAHHPSEIRATLDAARQKYPDKEVVAVFQPHTFTRTIALLEEFASV-- 361

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           LS + H+ L E+ +             +  L   +     V   E +  L  +       
Sbjct: 362 LSLADHVYLCEIFASVREE---AGDVSIEDLAKLVKGGAKVLPLENVSPLLSY------K 412

Query: 444 GDVVVVKSSNSCG 456
             V+V   +    
Sbjct: 413 DAVIVFMGAGDVQ 425


>gi|327439195|dbj|BAK15560.1| UDP-N-acetylmuramate-alanine ligase [Solibacillus silvestris
           StLB046]
          Length = 432

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 141/422 (33%), Gaps = 55/422 (13%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F  + +++G  ++  N         +     GV+     +          ++ T IAIT
Sbjct: 52  NFDENNIKEGLTVIAGNAFNDDHPELVRARELGVE----VIRYHKFLGEYSNRYTSIAIT 107

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKT+T  +++  +     T   IG                 D  + + E       E
Sbjct: 108 GAHGKTSTTGLMSHVVGGYMPTSYLIGDGTGSGK---------EDASYFVMEA-----CE 153

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++T I   H   F+ I+++  A  ++   L+    I    DD   + 
Sbjct: 154 YRRHFLAYHPDYAIMTNIDFDHPDYFTSIDDVYDAFQQL--ALQVNKAIIACGDDEQLQK 211

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           ++A         +  +G     DF  R   + SE +  +V ++ +   +      G H  
Sbjct: 212 IQANV------PVVYYGFDPANDFSARNIVKTSEGTEFDVYVRNEFYSKFFIPLFGDHTI 265

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +            + L+ +   + R    +         ++ + Y  +P  +
Sbjct: 266 LNTLAVISLCHYEGVPAKLIQERLNTYGGVKRRFTETKV-----GNAILVDDYAHHPTEI 320

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
            A +    Q  P  E   +AV          +++F  + A+ LS  + +++         
Sbjct: 321 AATLQSARQKYPGRE--VVAVF--QPHTFTRTKAFLQNFADSLSGADAAYLCDIFGSARE 376

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-----FYRL 460
             G   +     L     V   ET+D L         +  V +   +         F  +
Sbjct: 377 KQGELTINDLANLIDGCTVLTIETVDQLKKH------ENAVFLFMGAGDVHKYQDAFEAI 430

Query: 461 IN 462
           +N
Sbjct: 431 LN 432


>gi|220918994|ref|YP_002494298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956848|gb|ACL67232.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 462

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 139/427 (32%), Gaps = 37/427 (8%)

Query: 31  SIDSR-SIAPQEAFFAIKGP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
             D R       A  A+      H  GHD    A   GA LVV +  +  +   +     
Sbjct: 36  VTDRRGEAELGGALAALPASVTRHLGGHD---PADFTGAELVVASPGVPLANPEI---QE 89

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                +    ++ +AAR      I+ ITG+ GK+TT  +    L+  ++T+  +G     
Sbjct: 90  ARRRGVAVWGEVELAARFLGGLPIVGITGTNGKSTTTALTGALLARDRRTF--VGGNLGT 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
               L L+  P D    + EL    L  I       R  +A +  + P HL  +  ++  
Sbjct: 148 PLSELVLSGEPADA--AVVELSSFQLEGIERF----RARVAAVLNVTPDHLDRYPDVDAY 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A+AKA +F   +       N  D     +   S A      + FG    A  +    +  
Sbjct: 202 AAAKARLFATQQPDDVAVANARDPRALAMAGASRA--DLHTFGFGAPTPASARDEGGEPG 259

Query: 267 SEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            E + +    +G++ E          G H  +N +  +    ++    +     L  F  
Sbjct: 260 PEGTAIWFTPRGRAPERYQLRNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAF-- 317

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G   R            +++S   N  S    ++     +P    R + ++G   +  
Sbjct: 318 -PGLHHRLELVAEGRGVEWVNDSKATNVDSTFVGLAAFPSGAP----RVVLIMGGRGKKA 372

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +          L    +  +   G    A++  L           +            
Sbjct: 373 PYAP------LRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPCGDLADAVRRAAVLSG 426

Query: 443 DGDVVVV 449
            GDVV++
Sbjct: 427 PGDVVLL 433


>gi|254470266|ref|ZP_05083670.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
 gi|211960577|gb|EEA95773.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
          Length = 473

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 154/426 (36%), Gaps = 57/426 (13%)

Query: 57  ILHAVQK--GAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           + HA     GA + V+++ +        +    ++PV    ++L  L +   A       
Sbjct: 57  VGHAADNLEGADVCVISSAIKGSNVELKAARENNMPVVRRAEMLAELMRFKQA------- 109

Query: 109 TIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IAI G+ GKTTT  M+   L    +  T    G  N +     T ARM    D+ + E
Sbjct: 110 --IAIGGTHGKTTTTSMVAALLDAGHMDPTVINGGIINAY----GTNARMGEG-DWMVVE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    ++     +   IAV+T I P HL ++   + + +A A+  E +   G   + 
Sbjct: 163 ADESDGTFVK-----LPADIAVVTNIDPEHLDHYGDFDGVRAAFAQFVENVPFYGFAVMC 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV--- 283
            D    + L  +      + I ++G +  AD +         +S   V +  +  +    
Sbjct: 218 LDHPEVQSLVGQIE---DRRIITYGTNPQADVRFTDVSTKGGKSIFSVSIHDRRGDKVTE 274

Query: 284 ----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               V    G H   N    + +   L    +   K L+ F   +   +R+    +    
Sbjct: 275 LQDLVLPMPGLHNVSNATAAIALAHSLGISGENIRKGLASFGGVK---RRFTHTGSWNGV 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAEVLS 397
              D+ Y  +P  +K+ +    + +   EG+ IAV+       +  L + F     +   
Sbjct: 332 EFFDD-YAHHPVEIKSVLHAAREAA---EGKVIAVMQPHRFTRLQSLFEDFCACFND-AD 386

Query: 398 LYNISHVWLSGFHVLALKD------ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
              I+ V+ +G   +   D       L    H  VH     D L   I      GD+V+ 
Sbjct: 387 KVVIAPVFAAGEQPIEGADQPDLISGLRAGGHRSVHSIAGPDELAGKIAELAEPGDLVIC 446

Query: 450 KSSNSC 455
             + + 
Sbjct: 447 LGAGNI 452


>gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 451

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 136/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAITG+ GKTTT  +L   L  + K +   +G    +    + +       D  + E   
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 RYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 ADEQIIKGAESQDIVKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEILSE 451


>gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 451

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAITG+ GKTTT  +L   L  + K +   +G    +    + +       D  + E   
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S +AD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSIDADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 RYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 ADEQIIKGAESQDIVKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEILSE 451


>gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 497

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 159/483 (32%), Gaps = 55/483 (11%)

Query: 6   TFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+ Q I     G      Q  +  + ++S  +     F A+ G    G      A  
Sbjct: 4   TVLDVAQLIGARMQGGTAEQAQVPITEVGLNSAELPAGALFAAVPGTRVHG---ARFAAD 60

Query: 63  KGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVG 118
             A  ++ +       S    + PV  VDDV   L     AV     S+ T+I ITG+ G
Sbjct: 61  TAAAAILTDEAGWGLLSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDF 162
           KTTT  ML   L +       IG+    I                   L +  +   V  
Sbjct: 121 KTTTSYMLEAGLLAAGYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTH 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKT 220
            + E+    L   R L   V+  +A  T ++  HL   + + E   AKA  F      + 
Sbjct: 181 VVMEVSSHALMLGRVL--GVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRA 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +  DD + E + +     G++T+ + G++ +      +  +   Q +      G  
Sbjct: 239 ARAVVCVDDEWGEKMAS-VFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGAV 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G     N  + L +   +  D+   +            G+       Q F  
Sbjct: 298 VAATVPLPGRFNVANAALALALADTVGVDMTALLPG---LAGVGVPGRMEVVDCGQDFLA 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  Y   PA++KA   VL+ +     GR   V+G     G+   S    +    +   
Sbjct: 355 VVD--YAHKPAAIKA---VLATVRGQITGRIGLVVGA---GGDRDHSKRPIMGAEAA-AG 405

Query: 401 ISHVWLSGFH----------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             +V ++  +             L      S  V            + +    GD V++ 
Sbjct: 406 ADYVVVTDDNPRNEDPAAIRAQVLAGTAAGSAEVVEIGDRRAAIRQVVAWAKPGDAVIIA 465

Query: 450 -KS 451
            K 
Sbjct: 466 GKG 468


>gi|260566065|ref|ZP_05836535.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
 gi|260155583|gb|EEW90663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
          Length = 471

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 147/406 (36%), Gaps = 43/406 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   + +     +PV    ++L  L +   A         +AI G+ GKTTT  ++
Sbjct: 75  AIKKNNPELVAAREKLLPVVRRAEMLAELMRFRRA---------VAIGGTHGKTTTTSLV 125

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L    +  T    G  N +     T ARM  D D+ + E   S    ++     +  
Sbjct: 126 AALLDAGHLDPTVINGGIINAY----GTNARM-GDGDWMVVEADESDGTFLK-----LPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   + + +A  +  E +   G   +  D      ++A    +  
Sbjct: 176 DIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHP---EMQALVSRIED 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLM 298
           + I ++G +  A+ +    +     S  +V ++ +  E            G H   N   
Sbjct: 233 RRIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D   + L  F   +   +R+    +     + D+ Y  +P  ++A + 
Sbjct: 293 AIAVAHELGISSDDIRRGLGSFGGVK---RRFTHTGSWNGVEIFDD-YGHHPVEIRAVLK 348

Query: 359 VLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAEVLSLYNISHVWLSGFHV 411
              + +    GR +A++       +     E +  F+  D   V  +Y      + G + 
Sbjct: 349 AAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L   +  + H    Y+   + L   + S    GD VV   + + 
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454


>gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           sanguinis SK36]
 gi|158513223|sp|A3CLN5|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Streptococcus sanguinis SK36]
          Length = 450

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +    
Sbjct: 163 MLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 219 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 269 VAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 372

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 373 KKMVILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 421


>gi|86150175|ref|ZP_01068402.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597486|ref|ZP_01100720.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562423|ref|YP_002344202.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839291|gb|EAQ56553.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190078|gb|EAQ94053.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360129|emb|CAL34923.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926041|gb|ADC28393.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315930806|gb|EFV09802.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 475

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 137/358 (38%), Gaps = 39/358 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   + A 
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINAN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214
           +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 215 -EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E LEK               L + +     K I  +      D +L       E    +
Sbjct: 264 SERLEK-------------AFLHSSTQKEEDKLISLY------DDKLSLIHSSLEGLEFK 304

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     
Sbjct: 305 VDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----V 360

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L++    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA
Sbjct: 361 LSREPKFIIDDGFNGNFKGMSTSYKLCKS----YKGRKVLVSPGIVEV---SEEENIKLA 413

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++++        +S        +   + + +     +    L   +      GD+++ 
Sbjct: 414 KIINEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|227499510|ref|ZP_03929617.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227218389|gb|EEI83640.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 144/398 (36%), Gaps = 42/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +   LS+PV      LGAL        +R+    IA++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAAKKLSVPVVTRGVFLGAL--------MRNYKNSIAVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L    K        +  I +   L  M  +V  G  E  ++   E +       P  
Sbjct: 131 SKILMHSDK--------DATILLGGELEEMKGNVRVGSEEYLVTEACEYKGNIRYYYPQT 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I   HL  +  +E+I +   E     ++      N ++    L+           
Sbjct: 183 LIVLNIDEDHLDYYKDLEDIVNTFKEYLSNQDENSMTITNLNEDNNRLIFDSVKG----R 238

Query: 247 IYSFGKS-KNADFQLRKWKQCSEQS-WMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++ +  + AD+     +  ++     +++    S+E      IG H   N + ++   
Sbjct: 239 LITYAQDNEEADYNAFNIQFDNDGHPEFDLKFANGSIEHFKLGVIGRHNINNAMASIIAT 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 + T            G  +R +   +    T++ + Y  +P+ +K  +  L++ 
Sbjct: 299 YENGISIKTIK---ENIVKYTGLDRRMQVIGHVSDATIMTD-YGHHPSEIKVTVDALAE- 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDL---------AEVLSLYNISHVWLSGFHVLAL 414
             H +GR I V          +++   +            V  +Y     +    H   +
Sbjct: 354 --HTKGRLICVW--QPHTYSRTKTLFNEFLNCFDSCDEVIVTDIYAAREKFDPTIHSKDV 409

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            DAL  + I+  Y    +    +I+  +   D+V+   
Sbjct: 410 VDALVKKGINAKYISQFEECKDYIEKIIKKDDLVLTTG 447


>gi|218659512|ref|ZP_03515442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           IE4771]
          Length = 156

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           IDESYNANPASM+AAI++L+   P G GRRIAVLGDM EMGE ++  H DLA  L    I
Sbjct: 17  IDESYNANPASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGI 76

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            HVWL+G  + ALK++LP S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++
Sbjct: 77  EHVWLAGADMAALKESLPESVHVEYREKTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIV 136

Query: 462 NLLLEEFPAI 471
             LL++FP I
Sbjct: 137 AALLDKFPGI 146


>gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 385

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L Q +      +     +  I  DSR     + F  +KG +YD   ++   ++KGA
Sbjct: 9   SLRELSQILG--FENVQTDANIERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGA 66

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            ++       +S          VDDV  +L  +     +++K  +I ITGS GKTT K+M
Sbjct: 67  SVITKQKIFGSS--------IVVDDVYSSLLDICANKLIKNKGKVIFITGSYGKTTIKDM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L    K +A   + NN  G+P T+  MP + ++ + E G  ++G+   ++  +   
Sbjct: 119 LKSLLG--DKCHASKDNENNEFGIPFTILSMPKNTEYLVVECGARNIGDFDLISEKLYCD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           + ++T IA  HLS F  IE I+  K ++ E L+      
Sbjct: 177 VFILTAIASNHLSTFKNIENISKTKLKLKECLKDKDNFV 215



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 15/150 (10%)

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           +F P  GRG   +         +ID++YNA+P ++ A                I VLGDM
Sbjct: 250 IFTPTAGRGNVIKL----HGSEIIDQTYNAHPDTVIAT------AMEEDSNNTILVLGDM 299

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FI 437
            E+GE     H ++   L+ + I   +L+G     +   +  + ++++ E        ++
Sbjct: 300 AELGEDENKKHENVLNHLADFQI---FLTGKIFKEVSKKIF-NKNLNFFENKQDFPKNYL 355

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              L  G  V  K S S      + LL+ +
Sbjct: 356 IKQLKAGKKVYFKGSRSSKMETYLELLIND 385


>gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
 gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
          Length = 484

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 154/475 (32%), Gaps = 63/475 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF DLL  +    +       V GIS DSR +     F AIK       + IL A+ KGA
Sbjct: 14  TFTDLLAKVG---VSCKDSRIVRGISDDSREVEQDMLFVAIKATAMKK-EHILEALTKGA 69

Query: 66  GLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            ++               SL   +  + D L                  IA++G+ GKT+
Sbjct: 70  VVLCEKQPFADANIYEAASLKQKLILLLDTL---------YGRYEACQCIAVSGTNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMP--------------VDVDFGIF 165
               +   L   K     IG+           T    P                +   + 
Sbjct: 121 VASYIAQLLYMQKARVMVIGTGFVKGETIFFETSNTTPGLIALAKYFDIARQKQITHIVM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    + +   +  + R    V T I   HL            K ++   L+K+G I  
Sbjct: 181 EVSSHAIAQ-ERIARI-RFDAVVFTNITADHLDYHITKTHYRFTKFKLANYLKKSGVIIY 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D   +E +    H    + + S+G    A   +             +Q      ++  
Sbjct: 239 NAD---YEYMLPLVHMQSHRCV-SYGLGA-AHIPIEHVVLSESDIRFSLQ----GYKIRA 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H +G     N+   L  + I   + +   + +      +G   R        F   ID  
Sbjct: 290 HLLGLMNVYNVAAALTFMRINDVEYEQLQEDVEKLRAVKG---RLEVVYQGKFQVWID-- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y    A++K  +S   Q++   +GR I+++G     G         +AE+   Y+   ++
Sbjct: 345 YAHTAAALKEVLSFAKQVA---KGRVISIVGC---GGNRDVKKRPIMAEIAVKYSDVAIY 398

Query: 406 LSG-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
            S       + D L      R ++    E              + D++V+  K S
Sbjct: 399 TSDNPRFERVCDILKDMHAERFLNACVFEHRYYAIKHAVKIAQNSDIIVITGKGS 453


>gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
 gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
          Length = 459

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +    
Sbjct: 172 MLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 VAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGRVNEIAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQADPGDIVLL 430


>gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 455

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 148/422 (35%), Gaps = 43/422 (10%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             + GHD    A Q      VV +  V          F  +  L  +++    A      
Sbjct: 49  EAFVGHD----AGQVPVDATVVVSTAVRETNPELA--FAREHNLPVIHRSQALAIAAQGL 102

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             +A+ G+ GKTTT  ML  ALS+     ++A  G                  +  G F 
Sbjct: 103 DFVAVAGAHGKTTTSGMLAAALSAAGMDPSFAVGGVVAG--------FGTGAHLGQGRFF 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  +   +  FL +   P +A++T + P HL ++   E   +   E    +   G + + 
Sbjct: 155 VAEADESDGSFLNYT--PRVALVTNVEPDHLDHYGSREAFEAVFDEFVTRITADGALVVC 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSME 282
            DD     L  +  A G + ++S+G   + +     Q+ + +  +  S   V    +++ 
Sbjct: 213 ADDPGASALGQRVLATG-RRVWSYGLDSSVEGAQHLQISEVELHASGSSFLVSYGDETVA 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N    L +   L   +    +AL  F    G G+R+          L 
Sbjct: 272 VHLNVSGLHNVLNATGALAVALDLGISLSVMAEALKAFT---GTGRRFEFKGEVAGKRLF 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-------- 394
           D+ Y  +P+ + AA+     +   G+   +        +   +++F  + A         
Sbjct: 329 DD-YAHHPSEVAAALKQARVVVGEGKVVVLF----QPHLYSRTRNFAAEFAASLALADQV 383

Query: 395 -VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +  +Y      + G     + D L     V   ET   +   +      GD+ +   + 
Sbjct: 384 VLADIYGAREDPMPGITSALIGDKLVEVAFVGPLETAAEVAAELTE---AGDICITMGAG 440

Query: 454 SC 455
           + 
Sbjct: 441 NV 442


>gi|253732390|ref|ZP_04866555.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297207546|ref|ZP_06923982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300911629|ref|ZP_07129073.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|253723912|gb|EES92641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887882|gb|EFH26779.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300887050|gb|EFK82251.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 444

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 60  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 159 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 214

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 215 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 268

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 269 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 323

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 324 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 376

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  VV+   +      +L N  
Sbjct: 377 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQ--KLQNAY 434

Query: 465 LEEF 468
           L++ 
Sbjct: 435 LDKL 438


>gi|34811495|pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811496|pdb|1P31|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811497|pdb|1P3D|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp.
 gi|34811498|pdb|1P3D|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp
          Length = 475

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 139/422 (32%), Gaps = 48/422 (11%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +      L       IPV      L  + +          
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQXLAEIXRFR-------- 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT   ++   +  K         N  +              + I E 
Sbjct: 119 -HGIAVAGTHGKTTTTAXISXIYTQAKLD---PTFVNGGLVKSAGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T   P H   +    E+  +   +    L   G     
Sbjct: 175 DESDASFLH-----LQPXVSVVTNXEPDHXDTYEGDFEKXKATYVKFLHNLPFYGLAVXC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   Q    V     + + V+ 
Sbjct: 230 ADDPVLXELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Y  +P  +   I    +            PH   R   +  D  ++     +        
Sbjct: 346 YGHHPTEVGVTIKAAREGWGDKRIVXIFQPHRYSRTRDLFDDFVQVLSQVDAL-----IX 400

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           L +Y      + G    +L  ++     V          L   +   + DGD+++ + + 
Sbjct: 401 LDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460

Query: 454 SC 455
           S 
Sbjct: 461 SV 462


>gi|298695008|gb|ADI98230.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 417

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 33  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 83

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 84  VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 131

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 132 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 187

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 188 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 241

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 242 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 296

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 297 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 349

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  VV+   +      +L N  
Sbjct: 350 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQ--KLQNAY 407

Query: 465 LEEF 468
           L++ 
Sbjct: 408 LDKL 411


>gi|116492454|ref|YP_804189.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus pentosaceus
           ATCC 25745]
 gi|122266082|sp|Q03GC5|MURC_PEDPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116102604|gb|ABJ67747.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 436

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 135/375 (36%), Gaps = 49/375 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +    +  ++  K T I + G+ GKT+T  +L   LS + KT   IG          
Sbjct: 88  LKVIRYHELLGQMLDKYTSIGVAGTHGKTSTTGLLAHVLSGLDKTSYLIGDG-------- 139

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D  F +FE        I +      P   ++T +   H   +  + ++ SA  
Sbjct: 140 -TGKGIPDARFFVFEADEYRRHFIAY-----HPDYMIMTNVDFDHPDYYKDLADVESAFQ 193

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++ + + K   IF   +D     +           +Y +G  +N DFQ     + +  S 
Sbjct: 194 QVADQVHKG--IFAWGEDESLRKINTSV------PVYYYGTKENDDFQATNISRTTTGSE 245

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V  +G+ +     +  G H   N L  + +      D+D   K L  +   + R  + 
Sbjct: 246 FDVIHKGEKLGRFTINLFGEHNVLNSLAVIAVAYFEKVDLDLVQKELLTYQGVKRRFSKE 305

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A N     ++ + Y  +P+ +KA +    Q     + + +AV          + +   
Sbjct: 306 AVADN-----ILIDDYAHHPSEIKATLDAARQ--EFPDKKIVAVF--QPHTYSRTAALMD 356

Query: 391 DLAEVLSLYN---ISHVWLSGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
             A+ LSL +   ++ ++ S            L D +  +  + + + +  +        
Sbjct: 357 GFAKSLSLADQVVLTEIFGSAREDAGAVSSQDLADKIGNNTKLIHQDDLSAISDL----- 411

Query: 442 VDGDVVVV-KSSNSC 455
              D V+V   +   
Sbjct: 412 --HDAVLVFMGAGDI 424


>gi|314978259|gb|EFT22353.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA2]
 gi|315088657|gb|EFT60633.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA1]
          Length = 471

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 140/406 (34%), Gaps = 35/406 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLT 179
             M+   L       + +      IG PL    M   +  G   + E   S    +++ +
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V     V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QIV-----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            ++G   + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESIGTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFH 410
             ++   G+GR IA       +   ++ F  +    L          +Y      + G  
Sbjct: 354 ARRV-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 411 GELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1]
          Length = 451

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 135/367 (36%), Gaps = 32/367 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AITG+ GKTTT  +L   L  + K  +  +G    +    + +       D  + E   
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK + L  K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAKYNQL-DKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 KYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           P  +  +IS +              PH   R   ++ D  E   L+         +L  Y
Sbjct: 335 PVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPEALSLADQL-----ILLPTY 389

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +     + G     +   L   +    ++  D    F++    +  V++++ +       
Sbjct: 390 SAGEQIIKGAESQDIAKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TN 444

Query: 460 LINLLLE 466
           L+ +L E
Sbjct: 445 LVEMLSE 451


>gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1056]
          Length = 459

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 136/384 (35%), Gaps = 46/384 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  + DMV       IPV         L  L   A       II ITGS GKTTT  M+ 
Sbjct: 91  IPYDNDMVVRALEKKIPVI----TEVELAYLISEA------PIIGITGSNGKTTTTTMIA 140

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L++  +     G+          +A+     D  + EL    L  I        P IA
Sbjct: 141 QVLTAGGQNGLLSGNIGFP---ASQVAQTASSKDTLVMELSSFQLMGIE----AFHPQIA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT + P HL     +EE A+AK  I + +     + LN++  + + + +++ A     +
Sbjct: 194 VITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQDWAKEMASQTQAA----V 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F  ++  D          E   +  + +           G H  +N L T+ +  +  
Sbjct: 250 VPFSTTEKVD------GAYLEGDVLTFRGEAIMQAAEIGVPGSHNVENALATIAVAKLRG 303

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D  T  + LS F   +    R +           ++S + N  + + A+S         
Sbjct: 304 IDNQTIKEVLSAFGGVK---HRLQYVGRVNEVAFYNDSKSTNILATQKALSGFD------ 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             + I + G   + G        DL        +  + + G     +K A  ++  V Y 
Sbjct: 355 NSKVILIAGG-LDRGNEFDELVPDL------KGLKKMVILGQSAPRVKRAADQAG-VSYL 406

Query: 428 ETMD--GLFLFIQSSLVDGDVVVV 449
           +  D         +    GD+V++
Sbjct: 407 DATDVWDAAHKAFAQAEPGDIVLL 430


>gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
 gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
          Length = 518

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 132/425 (31%), Gaps = 48/425 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDDV 91
           DSR + P+  F   KG  +   +++L A+  GA   V   D          +P   V+D+
Sbjct: 43  DSRRVVPRTLFVC-KGAAF-RREYLLQALAAGAVAYVSEVDYEVDGEVGHEVPRVLVNDI 100

Query: 92  LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-------CIGS 142
             AL  LA         +  + A TG+ GKTT+   L   LS   +              
Sbjct: 101 RTALGLLADAAYDHPSGRVKVCAFTGTKGKTTSAYYLRSILSEHAREMGRPVPALLTGVE 160

Query: 143 YNNHIGVPLTLARMPVD--------------VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           Y++ +    +L   P                 +  + E     +   R L   V   +  
Sbjct: 161 YDDGVERGDSLLTTPESFELERRFANAASVGCEHVVMEASSQAIKFRRTL--GVDFAVGA 218

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIK 245
            T     H+S      +E+   +K  +FE         +N D D     L A   +  ++
Sbjct: 219 FTNFGEDHISPIEHPTLEDYLESKLLLFERCR---VAVVNLDMDVAERALAAAHASRTVE 275

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++  +   AD  +  + +        V+    + E++          N L  +    
Sbjct: 276 RVLTYSLEDAAADVFVPSYVRTERGIRATVRTPRIARELMIPSPAVFNLSNALGAIACAE 335

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D     LS  +       R     ++    +    Y  N  S++   ++L  + 
Sbjct: 336 ALGISADAIETGLSRAYAPG----RMELYPSESGRIMGVVDYAHNGMSLE---TLLRDLR 388

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420
                R  AV+      G         + E         V             + DA+ R
Sbjct: 389 ASYPDREFAVV--FGATGGKGVDRRETMGEAAGKLADRIVITEDDPGPEDPALICDAIAR 446

Query: 421 SIHVH 425
           ++   
Sbjct: 447 AVSAQ 451


>gi|315221960|ref|ZP_07863871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
 gi|315188926|gb|EFU22630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
          Length = 450

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 125/349 (35%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  +     G+         T A      D
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQNGLLSGNIGFPASQVATTATQN---D 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P H+      E   +AK  I + + K+ 
Sbjct: 163 TLVMELSSFQLMGIETF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKSD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++ +  + L AK+ A    T+  F  ++  D          E + +  + +    
Sbjct: 219 FLILNFNQTLAKELAAKTQA----TVVPFSTTEKVD------GAYLEGNMLTFRGEPVMA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   +     + L+ F   +    R +          
Sbjct: 269 ADELGVPGSHNVENALATIAVAKLRGIENQVIKETLAGFGGVK---HRLQYVGEINHVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------QGV 372

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 373 KKMVILGESAARVKRAADKAGVSYMDAADVKDATQKAFAEAQAGDIVLL 421


>gi|253315887|ref|ZP_04839100.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
          Length = 429

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 147/412 (35%), Gaps = 49/412 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCG 456
              ++++           + ++G  L  + S+      D  VV+   +    
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQ 421


>gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 457

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 130/358 (36%), Gaps = 36/358 (10%)

Query: 111 IAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  M++   LS+       +G   + I     +     + ++ I E   
Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDIIHGNFRVG----NSEYFITEACE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +RF      P++ +I  I   HL  +  I  I     +    +   G I  N DD
Sbjct: 170 YKQSFLRFF-----PYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIGNADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
                +   +       + ++ +  N D Q R  +   +   ++   + + K + +  + 
Sbjct: 225 EKVMEVLEVAKC----NVLTY-EINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  I   + D  +  LS F    G  KR+     +   T+ID+ Y 
Sbjct: 280 PGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTKNDITVIDD-YA 335

Query: 348 ANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +P  +KA +S   ++          PH   R   +  D  +  +      +        
Sbjct: 336 HHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDCDELVLMDIYAARE 395

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            ++  +     +   L DA+    +      + +    ++ ++L  GD+++   +   
Sbjct: 396 KDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAGDV 448


>gi|315928276|gb|EFV07592.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 431

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 137/358 (38%), Gaps = 39/358 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   + A 
Sbjct: 100 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINAN 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214
           +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E   
Sbjct: 160 LSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALN 219

Query: 215 -EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E LEK               L + +     K I  +      D +L       E    +
Sbjct: 220 SERLEK-------------AFLHSSTQKEEDKLISLY------DDKLSLIHSSLEGLEFK 260

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     
Sbjct: 261 VDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----V 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L++    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA
Sbjct: 317 LSREPKFIIDDGFNGNFKGMSTSYKLCKS----YKGRKVLVSPGIVEV---SEEENIKLA 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++++        +S        +   + + +     +    L   +      GD+++ 
Sbjct: 370 KIINEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKHGDLILF 423


>gi|289426296|ref|ZP_06428042.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289426882|ref|ZP_06428608.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|295130334|ref|YP_003580997.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|289153461|gb|EFD02176.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289159971|gb|EFD08149.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|291375983|gb|ADD99837.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|313764734|gb|EFS36098.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA1]
 gi|313772516|gb|EFS38482.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL074PA1]
 gi|313807246|gb|EFS45733.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA2]
 gi|313809752|gb|EFS47473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA1]
 gi|313815799|gb|EFS53513.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA1]
 gi|313818292|gb|EFS56006.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA2]
 gi|313820054|gb|EFS57768.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA1]
 gi|313823137|gb|EFS60851.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA2]
 gi|313825586|gb|EFS63300.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA1]
 gi|313827825|gb|EFS65539.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA2]
 gi|313830661|gb|EFS68375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL007PA1]
 gi|313833881|gb|EFS71595.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL056PA1]
 gi|314915225|gb|EFS79056.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA4]
 gi|314918546|gb|EFS82377.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA1]
 gi|314919809|gb|EFS83640.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA3]
 gi|314925476|gb|EFS89307.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA3]
 gi|314931824|gb|EFS95655.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL067PA1]
 gi|314955980|gb|EFT00378.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA1]
 gi|314958375|gb|EFT02478.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA1]
 gi|314960273|gb|EFT04375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA2]
 gi|314968083|gb|EFT12182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA1]
 gi|314973663|gb|EFT17759.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA1]
 gi|314976256|gb|EFT20351.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL045PA1]
 gi|314983535|gb|EFT27627.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA1]
 gi|314987723|gb|EFT31814.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA2]
 gi|314990202|gb|EFT34293.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA3]
 gi|315085925|gb|EFT57901.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA3]
 gi|315096283|gb|EFT68259.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL038PA1]
 gi|315098266|gb|EFT70242.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA2]
 gi|315101043|gb|EFT73019.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA1]
 gi|315108235|gb|EFT80211.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL030PA2]
 gi|327325919|gb|EGE67709.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA2]
 gi|327332208|gb|EGE73945.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA3]
 gi|327442830|gb|EGE89484.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA2]
 gi|327446201|gb|EGE92855.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA2]
 gi|327447816|gb|EGE94470.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA1]
 gi|327451052|gb|EGE97706.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA3]
 gi|327453593|gb|EGF00248.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA2]
 gi|328753085|gb|EGF66701.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA1]
 gi|328753740|gb|EGF67356.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL020PA1]
 gi|328759170|gb|EGF72786.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA2]
 gi|328760584|gb|EGF74152.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL099PA1]
 gi|332675176|gb|AEE71992.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           266]
          Length = 471

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 139/406 (34%), Gaps = 35/406 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLT 179
             M+   L       + +      IG PL    M   +  G   + E   S    +++ +
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V     V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QIV-----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            + G   + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESTGTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFH 410
             ++   G+GR IA       +   ++ F  +    L          +Y      + G  
Sbjct: 354 ARRV-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 411 GELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|15924730|ref|NP_372264.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927317|ref|NP_374850.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283412|ref|NP_646500.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486565|ref|YP_043786.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|148268218|ref|YP_001247161.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394286|ref|YP_001316961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980057|ref|YP_001442316.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|255006526|ref|ZP_05145127.2| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794123|ref|ZP_05643102.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|258415827|ref|ZP_05682098.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|258420656|ref|ZP_05683595.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|258438306|ref|ZP_05689590.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|258443764|ref|ZP_05692103.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|258445975|ref|ZP_05694151.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|258448298|ref|ZP_05696425.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|258454175|ref|ZP_05702146.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|269203378|ref|YP_003282647.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893234|ref|ZP_06301468.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|282927869|ref|ZP_06335480.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|295406051|ref|ZP_06815859.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|296276768|ref|ZP_06859275.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245024|ref|ZP_06928901.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|54037858|sp|P65475|MURC_STAAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54037859|sp|P65476|MURC_STAAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041508|sp|P65474|MURC_STAAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56749192|sp|Q6G8I7|MURC_STAAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224735|sp|A7X3H5|MURC_STAA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082503|sp|A6U2K6|MURC_STAA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082504|sp|A5ITR2|MURC_STAA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13701535|dbj|BAB42829.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247512|dbj|BAB57902.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204853|dbj|BAB95548.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49245008|emb|CAG43469.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741287|gb|ABQ49585.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946738|gb|ABR52674.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722192|dbj|BAF78609.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257788095|gb|EEV26435.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|257839420|gb|EEV63893.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|257843260|gb|EEV67670.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|257848350|gb|EEV72341.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|257851170|gb|EEV75113.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|257855217|gb|EEV78156.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|257858537|gb|EEV81413.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|257863627|gb|EEV86384.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|262075668|gb|ACY11641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590379|gb|EFB95458.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|282764552|gb|EFC04678.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|285817422|gb|ADC37909.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus
           04-02981]
 gi|294969048|gb|EFG45069.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|297178104|gb|EFH37352.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|302333404|gb|ADL23597.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|312830118|emb|CBX34960.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130621|gb|EFT86607.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727526|gb|EGG63982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329733180|gb|EGG69517.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 437

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  VV+   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|282854257|ref|ZP_06263594.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|282583710|gb|EFB89090.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|314923244|gb|EFS87075.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL001PA1]
 gi|314967011|gb|EFT11110.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA2]
 gi|314980967|gb|EFT25061.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA3]
 gi|315091698|gb|EFT63674.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA4]
 gi|315093068|gb|EFT65044.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL060PA1]
 gi|327327831|gb|EGE69607.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL103PA1]
          Length = 471

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 139/406 (34%), Gaps = 35/406 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLT 179
             M+   L       + +      IG PL    M   +  G   + E   S    +++ +
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V     V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QIV-----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            + G   + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESTGTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFH 410
             + +  G+GR IA       +   ++ F  +    L          +Y      + G  
Sbjct: 354 ARR-AVTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + DA L       Y      L   +   +  GD+V+   +   
Sbjct: 411 GEMVHDAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
 gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
          Length = 451

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 129/347 (37%), Gaps = 36/347 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  I ITGS GKTTT  ++   L   +K     G+          +A+     ++ + 
Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGV---AACEVAQKAEANNWLVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  IR      RPHI+V+  I  AHL      E  A AKA IF+         +
Sbjct: 167 ELSSFQLAGIRDF----RPHISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVV 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVV 284
           N DD     L   S A   K I+S  K  ++   ++  W   ++++ + V          
Sbjct: 223 NADDELVMRLAENSCAQ--KVIFSATKKLDSGAYIKDGWIYWNDEAVIAVS--------D 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  + +  +   D     K L+ F   +    R +           ++
Sbjct: 273 IVLPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVK---HRLQYIATIDGRKFFND 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A+S   + S       + +L    + G    +       +  L+N+  +
Sbjct: 330 SKATNILATQRALSAFEKDS-------VILLAGGLDRGNEFDAL------LPYLHNVKAI 376

Query: 405 WLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     +     ++    + Y + ++            GDV+++
Sbjct: 377 ILFGQTAAKIARVAKQAGIETIEYVDNVEKAVPVAYRLSEPGDVILL 423


>gi|86152106|ref|ZP_01070318.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124318|ref|YP_004066322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840891|gb|EAQ58141.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018040|gb|ADT66133.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 475

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 133/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       E    +V 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEEDKLISLY------DDKLSLIHSSLEGLEFKVD 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYELCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +     +GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|253734476|ref|ZP_04868641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253727530|gb|EES96259.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|320141683|gb|EFW33518.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143768|gb|EFW35542.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 444

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 60  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 159 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 214

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 215 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 268

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 269 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 323

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 324 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 376

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 377 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 434

Query: 465 LEEF 468
           L++ 
Sbjct: 435 LDKL 438


>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
 gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
          Length = 456

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 37/357 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SK  + A+TG+ GKTTT  ++   L S       +G+    IG P T   +  +  
Sbjct: 101 AYQSSKGKLCAVTGTNGKTTTVSLIGEILKSEYSDTHVVGN----IGNPFTAEALETEEQ 156

Query: 162 FG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E+    L  I        P+++ IT I P HL     ++   + K  I E  E+ 
Sbjct: 157 SATVCEVSSFQLETI----VDFHPNVSAITNITPDHLDRHKTMKNYIAVKESIAENQEEE 212

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +I LNY D        K  +L  K ++   + +  D +  K            + + K 
Sbjct: 213 DSIVLNYMDPELRKF-GKKRSLKPKVLWFSSEEEPKDTK-EKESLFLRGDTFYYKKEDKE 270

Query: 281 MEVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++      H +G H  +N+L  +G+   +   +D  IK    F P E    R      +
Sbjct: 271 EKLFTTKDVHLLGKHNYENILCAVGVGLKMGVPMDKIIKVCKKFKPVE---HRIEFVRER 327

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N   + AAI  L  +     G  + + G            H+D    +
Sbjct: 328 SGVKYYNDSKGTN---VDAAIQALRAMP----GPVVLIGGGY--------DKHVDFDPWV 372

Query: 397 SLYN--ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   + ++ L G     + +   ++   +V ++E MD       +    GD V++
Sbjct: 373 KEFKGRVKYLVLIGETRNQIAETAKKNGFQNVMFAEDMDEAVKDCAAYADPGDYVLL 429


>gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora
           setae KM-6054]
          Length = 468

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 158/437 (36%), Gaps = 46/437 (10%)

Query: 56  FILHAVQ---KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           F+ HA +    G   VVV++ + A    L       +PV    D L AL     A     
Sbjct: 57  FVGHAAEHLPAGTSSVVVSSAIRADNPELVAARERGVPVVHRSDALAALMGGRRA----- 111

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +A+ G+ GKTTT  ML ++L  +               +   L     +   G  E
Sbjct: 112 ----LAVAGTHGKTTTTSMLAVSLGELG--------LEPSYAIGGDLDAPGSNAHHGAGE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + ++   E     H   P +A++  +   H +N++ IEEI  +       ++  GT+ ++
Sbjct: 160 IFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASIEEIHQSFETFVGRIQPGGTLVVS 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      L  +        + + G +++AD ++         S + V+L G+ +     
Sbjct: 220 ADHEGARELTRRVAGRAGLNVVTVGAAEDADVRVLAVAAHGMTSEVTVELGGERLVFTVS 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N +  L     L    +   KAL  +    G  +R +         +I +SY
Sbjct: 280 VPGRHYAHNAVAALAAGVALGVPAEGLAKALGAYT---GVRRRLQLKGEARGTQVI-DSY 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-- 404
             +P  M A +  + + +    GR + V      +   +Q    ++   L+L + S V  
Sbjct: 336 AHHPTEMAADLEAIREAAGA--GRVLVVF--QPHLFSRTQQLAEEMGLALALADASVVLD 391

Query: 405 -------WLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC- 455
                   + G     + DA  R    V            + +    GD+V+   +    
Sbjct: 392 IYPAREDPIPGVTAELIIDAARRAGADVRAEHDFAAAPAVLAALAAPGDLVLTMGAGDVT 451

Query: 456 GFY-RLINLLLEEFPAI 471
                ++  L +  PA+
Sbjct: 452 NLGPEILAALADVAPAV 468


>gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
 gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
          Length = 501

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 161/476 (33%), Gaps = 63/476 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+    +A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 -SIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLG 173
            +  K  A + + N  +               L L RM  +         + E+      
Sbjct: 137 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYK 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             R   + +   + +   I+P H+S       ++    K ++      + T+ LN++  +
Sbjct: 197 TQR--VYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILN---SKTVVLNHESDY 251

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HH 286
           F+LL+  +    I TI ++G+ + +++Q+   +         +      + +        
Sbjct: 252 FDLLRETADLFQIPTI-TYGRLEESNYQV--IRSDKGTHGFTLSSHEDRLAICDTAYDIL 308

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N    +   ++  A    A             G+  +   + G    +D  Y
Sbjct: 309 LAGGFNQENAASAIIAAALTGASSQDAQDG---LKEARVPGRMDQLIQSNGAHVYVD--Y 363

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+K  +      + H +GR I VLG     G  + S   D  +VLS         
Sbjct: 364 AHNYLSLKTLLEFAK--NEHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADIAFLT 418

Query: 407 SG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          + + +  +I      VHY            +     D VV+  K 
Sbjct: 419 ADDPAFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|293510628|ref|ZP_06669333.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
 gi|291466519|gb|EFF09040.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 437

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 158/424 (37%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P        + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGVGLP--------ESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G  ++ D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKESDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|326202446|ref|ZP_08192315.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
 gi|325987564|gb|EGD48391.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
          Length = 467

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 139/404 (34%), Gaps = 44/404 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L IPV    ++LG L K             IA+ G+ GKTTT  M
Sbjct: 80  VAVKDDNPEMIQSKELGIPVIDRAELLGLLMKKHSFG--------IAVAGTHGKTTTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +         T     + +    +   L  +  +   G  E  ++   E         P 
Sbjct: 132 I--------TTIMLEANTDPTAHIGGELDCIGGNTRIGGSEYFITEACEYYGSFLKFHPF 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+  I   H+  F  +E I S   E    + + G I    DD     + +K       
Sbjct: 184 MAVVLNIEVDHVDYFRDLEHIKSTFGEFVALVPRNGYIVACADDENTLSVVSKRDC---- 239

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
            I ++G K+K+A +  ++    S   +  EV  +G  M +V     G H   N L  +  
Sbjct: 240 NIITYGLKNKDAMWTAKEITYNSMGCASFEVYKEGTKMGDVSLSVPGPHNVSNSLAAIAA 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +D     LS F    G  KR+          +ID+ Y  +P+ ++A ++    
Sbjct: 300 AHTCGCSMDNIAYGLSRFG---GSHKRFELKGLVDNIKVIDD-YAHHPSEVQATLNAAKS 355

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVL 412
                      PH   R  A L    E     ++ +I + ++ +          G  H  
Sbjct: 356 SDHNKIWCVFQPHTYTRTRAFLDKFSE--SFGEADNIVITDIYAAREKD----PGDIHSK 409

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L D +     +  Y      +  ++  +   GD+++   +   
Sbjct: 410 ILADRIRENGGNAVYISDFQDIAEYLDKNAQSGDLILTMGAGDI 453


>gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           glutamicum]
          Length = 555

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 89/483 (18%), Positives = 150/483 (31%), Gaps = 53/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQK 63
           W    L Q +  H++G   +  +  I +DS S+      F A+ G    G  F       
Sbjct: 51  WHPQGLCQGVPAHAVG---EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAA 107

Query: 64  GAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
            A  ++ +     V +    + P+  VDDV   L   +           T+I +TG+ GK
Sbjct: 108 KAVAILTDAAGLEVLNEAGETRPIIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGK 167

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  +L   L         IG+    I       ++                   V   
Sbjct: 168 TTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHV 227

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TG 221
           + E+    L   R         +A  T ++  HL     +++   AKA  F         
Sbjct: 228 VMEVSSHALSLGR--VAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVAD 285

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQ-GK 279
              +  DDS+ + +   S A  ++T+ + G  + ADF               ++     +
Sbjct: 286 KQVVCVDDSWGQRMA--SVAADVQTVSTLG--QEADFSATDINVSDSGAQSFKINAPSNQ 341

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S +V     G     N  +         A                  G+  R    Q F 
Sbjct: 342 SYQVELALPGAFNVANATLA----FAAAAPWVLMATFARGMSKVAVPGRMERIDEGQDFL 397

Query: 340 TLIDESYNANPASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            ++D  Y   PA++ A +  L        G G R     D  + G +    H   +   +
Sbjct: 398 AVVD--YAHKPAAVAAVLDTLRTQIDGRLGSGYRCWWRRDSTKRGPMGSCPHRSGSSYCT 455

Query: 398 LYNISHVWLSGFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             N+  V  +G    A+     +        + V            +      GD +VV 
Sbjct: 456 DANLVRV--AGTIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVA 513

Query: 450 -KS 451
            K 
Sbjct: 514 GKG 516


>gi|313837456|gb|EFS75170.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA2]
 gi|314929334|gb|EFS93165.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL044PA1]
 gi|314971663|gb|EFT15761.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA3]
 gi|328906998|gb|EGG26764.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium sp. P08]
          Length = 471

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 134/402 (33%), Gaps = 29/402 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VVV++ +      L   V      L   ++ A  A L      I+I G+ GKTTT 
Sbjct: 74  GARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGISIAGTHGKTTTT 130

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   L       A               +      +  + E   S    +++ + +V 
Sbjct: 131 GMVATMLDHAG---ADPSYVIGSPLAATGKSSHLGGGEAFVVEADESDGSFLQYPSQIV- 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               VIT +   HL N+   +        +     +   +  N DD     L  +  + G
Sbjct: 187 ----VITNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLESTG 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G+S+ A+ +L       + +   +        +     G +   N      + 
Sbjct: 242 TVRVVTYGESEQAEVRLVDLDLNGKAASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVG 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +    + 
Sbjct: 302 SLLGISHRDLLAGIASFT---GTLRRFQLVGRVNDVSIFDD-YAHHPTELRATLGAARR- 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLAL 414
           +  G+GR IA       +   ++ F  +    L          +Y      + G     +
Sbjct: 357 AVTGQGRVIACF--QPHLFSRTRDFVGEFGSALTLVDRVIVSDIYPAREDPIPGVTGELV 414

Query: 415 KDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            DA L       Y      L   +   +  GD+V+   +   
Sbjct: 415 HDAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|283770818|ref|ZP_06343710.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460965|gb|EFC08055.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 437

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   D+    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDLTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  VV+   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSIDVLEQFDNAVVLFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|282917000|ref|ZP_06324758.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319487|gb|EFB49839.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 437

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   D+    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDLTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  VV+   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSIDVLEQFDNAVVLFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
 gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
          Length = 481

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 95/494 (19%), Positives = 169/494 (34%), Gaps = 70/494 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH          + I  DSR    +  FF +KG  +   +F++ A+ +G G
Sbjct: 17  FREIID--QGHYHYNYSHVIFDTICYDSRKAKEKSLFF-VKGAAFKK-EFLISAISQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IP   V D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMP-----VDVDFGIFEL 167
                LS      A + + N  +               + L  M       D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I+P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEV 283
           N D   F +LK +             + ++ DF   +     E S        GK + + 
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQSDNQIENSKAFSFSATGKLAGDY 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+   +N +        L A ++   K ++        G+        G    ID
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    
Sbjct: 347 --YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQ 398

Query: 404 VWLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSC 455
           V+L+         +A+ D +   I+  V              +      D V++ +    
Sbjct: 399 VFLTADDPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVII-AGKGA 457

Query: 456 GFYRLINLLLEEFP 469
             Y+++    E +P
Sbjct: 458 DCYQIVQGKKEAYP 471


>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
          Length = 437

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 138/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+          LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN---AKVGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+   AL  F   +G   R++ A        I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|126651320|ref|ZP_01723527.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. B14905]
 gi|126591849|gb|EAZ85932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. B14905]
          Length = 437

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 132/370 (35%), Gaps = 52/370 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GKT+T  ++   +   K T   IG                 + DF + E    
Sbjct: 104 IAITGAHGKTSTTGLMAHVVGGYKPTSYLIGDG---------TGAGHANADFFVMEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R       P  AV+T I   H   F+ I+++ SA   +   ++K   I    DD 
Sbjct: 152 --CEYRRHFLAYNPDYAVMTNIDFDHPDYFANIDDVYSAFQSLALQVKK--AIIACGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + ++AK        +  +G     DF+ R  ++ +E +  +V ++ +          G
Sbjct: 208 QLQRIQAKV------PVVYYGFGSENDFEARNVEKTTEGTKFDVFVRNEFYSTFFIPLFG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +        D     L  +   +    R     + G   LID+ Y  +
Sbjct: 262 DHAILNTLAVITLCEYEGISPDIIQDRLHTYKGVK----RRFTETDIGDNVLIDD-YAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---- 405
           P  ++A I    Q  P  E   +A+          +Q+F  D A+ LSL + +++     
Sbjct: 317 PTEIRATIQSARQKFPDRE--LVAIF--QPHTFTRTQAFLQDFADSLSLADTAYLCDIFG 372

Query: 406 ----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 G   +    +L     V  +E +D L          G V +   +        +
Sbjct: 373 SARETQGALSIQDLASLIEGSAVITTEGIDILTKH------QGAVFLFMGAGD------V 420

Query: 462 NLLLEEFPAI 471
               + F A+
Sbjct: 421 PKFQDAFEAV 430


>gi|315080330|gb|EFT52306.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL078PA1]
          Length = 471

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 133/403 (33%), Gaps = 29/403 (7%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L             +    +  +LA M +    G  E  +    E        
Sbjct: 130 TGMVATMLDCAGA--------DPSYVIGSSLAAMGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLA 413
           +   G+GR IA       +   ++ F  +    L          +Y      + G     
Sbjct: 357 V-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEL 413

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 414 VHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|307747707|gb|ADN90977.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 475

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 133/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLRTNENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       E    ++ 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEEDKLISLY------DDKLSLIHSSLEGLEFKID 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYELCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +     +GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|256850823|ref|ZP_05556212.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661034|ref|ZP_05861948.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|282934508|ref|ZP_06339763.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297205696|ref|ZP_06923091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
 gi|256615885|gb|EEU21073.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547971|gb|EEX23947.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|281301455|gb|EFA93744.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297148822|gb|EFH29120.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
          Length = 435

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 142/420 (33%), Gaps = 65/420 (15%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + KG          VA+   + +P+    D +  + +         + T I I+G+ 
Sbjct: 65  AQVIVKG-NAFKEENPEVAAALEMKVPMHSYPDTVEEIIQ---------QYTSIGISGAH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+T  +L+  L+    T   IG             R   D  F ++E       E R 
Sbjct: 115 GKTSTTALLSHVLTEAAPTSYLIGDG---------EGRGVKDSRFFVYEA-----DEYRR 160

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P   ++T I   H   F  I +  SA     +  +K   +F+  DD   + ++ 
Sbjct: 161 HFLAYHPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKK--ALFVWGDDPRLQKIET 218

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
           K         Y++G   + DFQ    K+ ++ +   V+  GK + E   H  G H   N 
Sbjct: 219 KIPK------YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKTHLFGDHNIMNS 272

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G+       ++   K L  +    G  KR     + G  T+ID+ Y  +P  MKA 
Sbjct: 273 LAVIGVALTEEVPMEDIQKGLLTY----GGAKRRFSEKDFGDITVIDD-YAHHPTEMKAT 327

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---LSGFHVLA 413
           I    Q     + + + V          ++ F  +  E+L    +   +   + G     
Sbjct: 328 IQAAKQ--KFPDKKLVVVF--QPHTYSRTKEFASEFIEIL--RGVDKAYITPIFGSAREK 381

Query: 414 LKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLI 461
             D              V     +  L            VVV   +         F +LI
Sbjct: 382 SGDISSEDLTSQIPGSEVIDIANIADLTK------NRNSVVVFMGAGDIEKYEDAFEKLI 435


>gi|78188040|ref|YP_378378.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
 gi|109892699|sp|Q3ANV2|MURC_CHLCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78170239|gb|ABB27335.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 467

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 135/387 (34%), Gaps = 42/387 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI-ALSSIKKTYACIG 141
           IPV   D++LG L +             I I+G+ GKTTT  M+    L + +     IG
Sbjct: 91  IPVIKRDEMLGELMRYKSG---------ICISGTHGKTTTTAMIATMLLEAGESPTVMIG 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             ++++     +     +  + + E       E       + P IA++ ++   H+  + 
Sbjct: 142 GISDYLKGSTVVG----EGKYMVIEA-----DEYDRAFLKLTPTIAILNSLESEHMDTYG 192

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +EE+  A       +   G +    D +    +    +    +   +FG  + AD    
Sbjct: 193 TLEELKQAFITFANKVPFYGRVICCVDWAEIRKIIPSLN----RRYITFGIEEPADVMAT 248

Query: 262 KWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                   +   ++  G     V  H  G H   N L        L    +  I   +  
Sbjct: 249 DIVLLEGSTTFTIRAFGIEYPNVRIHVPGKHNVLNALAAFSTGLELGISPERLI---AGL 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG---- 376
               G  +R++   +     ++ + Y  +P+ +KA +        H   + +AV      
Sbjct: 306 GCYSGMRRRFQVKYSGNNGLMVVDDYAHHPSEVKATVKAAKDGWQH--SKVVAVFQPHLF 363

Query: 377 ----DMC-EMG-ELSQSFHIDLAEV--LSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
               D   E G  LS++  + +A++         H  ++G  V            VH+  
Sbjct: 364 SRTRDFADEYGWALSRADEVYIADIYPAREKAADHPGVTGELVANAVRKA-GGKQVHFVN 422

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            M+ L+  +Q+ +    +++   +   
Sbjct: 423 GMEELYTALQTHVAPQTLLLCMGAGDI 449


>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2866]
          Length = 437

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 138/349 (39%), Gaps = 43/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+ ITGS GK+T   ++     +        G+          L+ +  D +  
Sbjct: 101 RTATKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++     +  +   H+  +  +E+   AK  I+   +     
Sbjct: 156 VLELSSFQL----ETTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIYHNAK---VG 208

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKS 280
            LN +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  + 
Sbjct: 209 VLNNED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N+L    +   +  ++D+   AL  F   +G   R++         
Sbjct: 262 AT----LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +
Sbjct: 315 WINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I   +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 365 I-ICYCFGRDGAQLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|57652038|ref|YP_186623.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87159924|ref|YP_494380.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195554|ref|YP_500360.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221845|ref|YP_001332667.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161509957|ref|YP_001575616.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|258424154|ref|ZP_05687036.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|258452291|ref|ZP_05700304.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|262049049|ref|ZP_06021927.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|262051815|ref|ZP_06024032.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|282925627|ref|ZP_06333276.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|284024787|ref|ZP_06379185.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849901|ref|ZP_06790640.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|68565674|sp|Q5HF34|MURC_STAAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892742|sp|Q2FFZ8|MURC_STAA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122539287|sp|Q2FXJ0|MURC_STAA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|172048949|sp|A6QHS3|MURC_STAAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082505|sp|A8Z4G7|MURC_STAAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|57286224|gb|AAW38318.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87125898|gb|ABD20412.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203112|gb|ABD30922.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374645|dbj|BAF67905.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368766|gb|ABX29737.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257845775|gb|EEV69807.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|257860016|gb|EEV82851.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|259160309|gb|EEW45336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|259162866|gb|EEW47430.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|282592407|gb|EFB97421.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|294823240|gb|EFG39670.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|315197209|gb|EFU27548.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|329726994|gb|EGG63451.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 437

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 244

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 81/237 (34%), Gaps = 32/237 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARM-----PVDVDFG 163
           TTT  +L   LS        +G+    +             P TL R        + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           + E+    L             IAV T +   HL      +E    K+ +F  L   
Sbjct: 183 VMEVTSQGLHM--ERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGND 237


>gi|238855721|ref|ZP_04646017.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260665507|ref|ZP_05866354.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934756|ref|ZP_06339996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|238831667|gb|EEQ24008.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260560775|gb|EEX26752.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301167|gb|EFA93471.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
          Length = 435

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 141/420 (33%), Gaps = 65/420 (15%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + KG          VA+   + +P+    D +  + +         + T I I+G+ 
Sbjct: 65  AQVIVKG-NAFKEENPEVAAALEMKVPMHSYPDTVEEIIQ---------QYTSIGISGAH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+T  +L+  L+    T   IG             R   D  F ++E       E R 
Sbjct: 115 GKTSTTALLSHVLTEAAPTSYLIGDG---------EGRGVKDSRFFVYEA-----DEYRR 160

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P   ++T I   H   F  I +  SA     +  +K   +F+  DD   + ++ 
Sbjct: 161 HFLAYHPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKK--ALFVWGDDPRLQKIET 218

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
           K         Y++G   + DFQ    K+ ++ +   V+  GK + E   H  G H   N 
Sbjct: 219 KIPK------YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKTHLFGDHNIMNS 272

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G+       ++   K L  +    G  KR     + G  T+ID+ Y  +P  M+A 
Sbjct: 273 LAVIGVALTEEVPMEDIQKGLLTY----GGAKRRFSEKDFGDITVIDD-YAHHPTEMRAT 327

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---LSGFHVLA 413
           I    Q       + + V          ++ F  +  E+L    +   +   + G     
Sbjct: 328 IQAAKQ--KFPNKKLVVVF--QPHTYSRTKEFASEFIEIL--RGVDKAYITPIFGSAREK 381

Query: 414 LKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLI 461
             D              V     +  L            VVV   +         F +LI
Sbjct: 382 SGDISSEDLTSQIPGSEVIDIANIADLTK------NRNSVVVFMGAGDIEKYEDAFEKLI 435


>gi|194336194|ref|YP_002017988.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308671|gb|ACF43371.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
          Length = 493

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 129/380 (33%), Gaps = 31/380 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  ++   L         +             A    +  F + E    
Sbjct: 124 IVVAGTHGKTTTTSLVAWLLEHGGLKPGFLVGGIPENFSLGCRASGRSEEGFFVTEGDEY 183

Query: 171 HLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                   +  +  RP IA+I  I   H   F  +E+I  +       +   GT+ +N D
Sbjct: 184 DTAFFDKRSKFLLYRPDIAIINNIEFDHADIFDSLEDIKRSFRLFVNLIPGNGTLLVNGD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     + +++       +  FG ++ +++        SE S  ++  QG  +  +    
Sbjct: 244 DKVALEVASRAFC----RVERFGLTRESEWSACNLSADSEASTFDLLYQGTLLGSIRIPL 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G +   N L  +   +     V+  I+A+ +F   +   +R            + E + 
Sbjct: 300 FGNYNIMNSLAAIAAATHSGLSVEAIIRAMPLFKRPK---RRMEIVGTYAHNITLVEDFA 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL----------- 396
            +P +++  +  L ++     GRRI    +          F  +LAE             
Sbjct: 357 HHPTAIRVTLEALGEL---YTGRRIIACFEPRSNTTTRNIFQQELAECFGPASIVVMGMV 413

Query: 397 ---SLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKS 451
                Y       +G     L++          + T     +  F+   L + DVVV+  
Sbjct: 414 HRPERYGAEQSLNTGRLKQELQNQGKDVFLAGENPTNYPADIVEFLHPQLNENDVVVLL- 472

Query: 452 SNSCGFYRLINLLLEEFPAI 471
           SN   F  L NLL E    I
Sbjct: 473 SNGS-FGNLKNLLTECLKKI 491


>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.4-21]
          Length = 437

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 138/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+          LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN---AKVGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+   AL  F   +G   R++ A        I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|239832308|ref|ZP_04680637.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
 gi|239824575|gb|EEQ96143.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
          Length = 468

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 156/433 (36%), Gaps = 53/433 (12%)

Query: 41  EAFFAIKGPHYDGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
           E F   K  +      I  A V   +  +  N   + +     +P+    ++L  L +  
Sbjct: 54  EVFVGHKAEN------IGDAEVVVVSTAIKKNNPELIAAREKLLPIVRRAEMLAELMRFR 107

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMP 157
            A         +AI G+ GKTTT  M+   L    +  T    G  N +     T ARM 
Sbjct: 108 HA---------VAIGGTHGKTTTTSMVAALLDAGHLDPTVINGGIINAY----GTNARM- 153

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D D+ + E   S    ++     +   IAV+T I P HL ++   + + +A  +  E +
Sbjct: 154 GDGDWMVVEADESDGTFLK-----LPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENV 208

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  D    + L ++      + I ++G++  A+ +    +     S  +V ++
Sbjct: 209 PFYGFGVMCLDHPEVQALVSRIE---DRRIITYGQNPQAEVRFVNHRMDGAASLFDVVIR 265

Query: 278 GKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +  E            G H   N    + +   L    D   + L  F   +   +R+ 
Sbjct: 266 SRKGEATEIKDLRLPMPGQHNVSNATAAIAVAHELGISADDIRRGLGSFGGVK---RRFT 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----GELS 385
                    + D+ Y  +P  ++A +    + +   +GR IA++       +     E +
Sbjct: 323 HTGTWNGVEIFDD-YGHHPVEIRAVLKAAREAA---KGRVIAIVQPHRFTRLASLFDEFA 378

Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442
             F+  D   V  +Y      + G +   L   +  + H    Y+   + L   + S   
Sbjct: 379 ACFNDADTVIVAPVYTAGEDPIEGVNSETLVSRIKTAGHRDARYANGPEALAPLVASIAE 438

Query: 443 DGDVVVVKSSNSC 455
            GD VV   + + 
Sbjct: 439 PGDFVVCLGAGNI 451


>gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
 gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
          Length = 451

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AITG+ GKTTT  +L   L  + K  +  +G    +    + +       D  + E   
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 KYNVQNATACIIACLDLGFKYEDIHNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 AGEQIIKGAESQDIAKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEMLSE 451


>gi|283957222|ref|ZP_06374684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791294|gb|EFC30101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 475

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 133/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       E    +V 
Sbjct: 264 SKRLEKAF-----------LHSSTKKEEDKLISLY------DDKLNLIHSSLEGLEFKVD 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGVKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYELCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +     +GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|157415066|ref|YP_001482322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386030|gb|ABV52345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931213|gb|EFV10185.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 475

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 133/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       E    ++ 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEEDKLISLY------DDKLSLIHSSLEGLEFKID 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYELCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +     +GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|148926962|ref|ZP_01810639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845046|gb|EDK22143.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 389

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 133/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   + A 
Sbjct: 58  QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIIADINAN 117

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E   
Sbjct: 118 LSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALN 177

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       E    +V 
Sbjct: 178 SKRLEKAF-----------LHSSTQKEEDKLISLY------DDKLSLIHSSLEGLEFKVD 220

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 221 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 276

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 277 REPKFIIDDGFNGNFKGMSTSYKLCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 329

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +      GD+++ 
Sbjct: 330 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKHGDLILF 381


>gi|78777404|ref|YP_393719.1| cytoplasmic peptidoglycan synthetases-like [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497944|gb|ABB44484.1| Cytoplasmic peptidoglycan synthetases-like protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 481

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 133/349 (38%), Gaps = 36/349 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
             K  I+AITGS GKT+ K  L   LS   + YA   S N   G+   +   +P + +  
Sbjct: 157 MEKLQIVAITGSYGKTSIKNFLYEILSKKYRVYATPRSVNTLGGIIKDINESLPNESEIY 216

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  +T  + P   V+  +  AH+  F  ++ I S K EI +   +    
Sbjct: 217 ICEAGARESGDIYEITTFLEPQNVVVGKVGLAHIEYFKTLQNIISTKLEIMKS-PRLQRA 275

Query: 224 FLN---YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           F++    D+               + +  FG        ++      + +  E+ L  + 
Sbjct: 276 FIHTSVTDEPH-------------EKVTFFGNE------IQNIDAKLDGTDFEIHLDNEI 316

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +  + +G     N+ + + I        D  I+A+    P E R +  +     G   
Sbjct: 317 LSLHTNVLGSFQTMNIAVAIRIAKTFGMSNDEIIEAVRGLKPVEHRLQMIK----AGGKL 372

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D+ YN N   M  A+    ++    EGR++ V   + E    S   ++ L E ++   
Sbjct: 373 ILDDGYNGNIDGMLEAV----RLCSLHEGRKVIVTPGLVES---SNELNLKLIEAINSV- 424

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V ++G     L        +         +   + S    GD+++ 
Sbjct: 425 FDIVIVTGSLNAELFSKNLNVKNKIMLHDKTKIESLLSSQTRAGDIILF 473


>gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK353]
          Length = 459

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   + D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASNKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIE----AFYPQIAVITNLMPTHLDYHGSVEEYAVAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 VAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|319939629|ref|ZP_08013988.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811218|gb|EFW07524.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
          Length = 450

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 126/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  ++    G+         T A      D
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQSGLLSGNIGFPASQVATTATKN---D 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P H+      E   +AK  I + + K+ 
Sbjct: 163 TLVMELSSFQLMGIETF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKSD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++ +  + L AK+ A    T+  F  ++  D          E + +  + +    
Sbjct: 219 FLVLNFNQTLAKELAAKTQA----TVVPFSTTEKVD------GAYLEGNMLTFRGEPVMA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   +     + L+ F   +    R +          
Sbjct: 269 ADELGVPGSHNVENALATIAVAKLRGIENQVIKETLAGFGGVK---HRLQYVGEINHVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------QGL 372

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 373 KKMVILGESAARVKRAADKAGVSYMDAADVKDATQKAFAEAQAGDIVLL 421


>gi|313633042|gb|EFR99962.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           N1-067]
          Length = 407

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 157/462 (33%), Gaps = 89/462 (19%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           Q  +   S D  +I       A  G  + D H+ I  A++ G                  
Sbjct: 7   QIPITTFSAD--NIKSGLTIIA--GNAFPDTHEEIERAMELG------------------ 44

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV      LG L             T IAITGS GKT+T  +L+  + +I+ T   IG 
Sbjct: 45  IPVIRYHKFLGQLID---------GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGD 95

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                             ++   E        + +     +P  A++T I   H   F  
Sbjct: 96  G---------TGSGTKGAEYFALEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKS 141

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++++ +A   + + ++K        DD     L           I  FG  +  +FQ + 
Sbjct: 142 VDDVFNAFETLGKQVKKAVFAL--GDDVELRKLTLDI------PIIYFGFGEENEFQAKN 193

Query: 263 WKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             + +  +  +V  + + +        G H   N L  + +       VD     L  F 
Sbjct: 194 VIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFE 253

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +    R     ++G   L+D+ Y  +P+ ++A ++   Q   + + + +AV       
Sbjct: 254 GVK----RRFSITDKGNQVLVDD-YAHHPSEIRATVNAARQ--KYPDKKIVAVF--QPHT 304

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMD 431
              +++F    A+ L+L     V+L           G   +A      +  H+   E  +
Sbjct: 305 FTRTRTFLQGFADSLNL--ADEVYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTE 362

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLINLLLEEF 468
            L  +         V++   +         + ++++   E F
Sbjct: 363 ELLKY------PDAVILFMGAGDVQKFQAAYEKVLD--QEAF 396


>gi|300173070|ref|YP_003772236.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887449|emb|CBL91417.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 444

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 35/303 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+ G+ GKT+T  +L   L +I  T   IG             R   +  F + E
Sbjct: 103 QTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDG---------TGRGVPNSQFFVAE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  IE++ +A ++    ++K   IF  
Sbjct: 154 A-----DEYRRHFKDYAPDYAILTNIDFDHPDYFKNIEDVTNAFSDFANHVKK--AIFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD+    L+ K+      T+Y +G S +N DF      + ++ S   V  +G+++ E  
Sbjct: 207 GDDAHLRALRPKA------TVYYYGTSPENDDFVAENIHKSTQGSHFNVTFRGETLGEFS 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +  +   D+D   + L  +   + R    + A      T+ID+
Sbjct: 261 VPLFGQHSILNALAVIAVAYMEKVDLDLIREYLMTYQGVKRRFSEKQIA----DITVIDD 316

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  + A +    Q  P+ +   IA+            ++  + A+ L       V
Sbjct: 317 -YAHHPTEIDATLDAARQKYPNKQ--IIAIF--QPHTYSRVIAYKDEFAKSLE--AADKV 369

Query: 405 WLS 407
           +L+
Sbjct: 370 YLA 372


>gi|331006870|ref|ZP_08330123.1| UDP-N-acetylmuramate-alanine ligase [gamma proteobacterium
           IMCC1989]
 gi|330419321|gb|EGG93734.1| UDP-N-acetylmuramate-alanine ligase [gamma proteobacterium
           IMCC1989]
          Length = 491

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 163/445 (36%), Gaps = 73/445 (16%)

Query: 56  FILHAVQK--GAGLVV----VNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H ++   GA ++V    V+ D     S     IPV    ++L  L +          
Sbjct: 64  FIGHHLENVIGADVIVNSSAVDEDNPEIVSAREHRIPVVRRAEMLAELMRYR-------- 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IA+ G+ GKTTT  ++T   ++        IG   +  G    L        + I E
Sbjct: 116 -HGIAVAGTHGKTTTTSLITSIFAAAGLDPTFVIGGLVHSTGSNAKLGT----SQYLIAE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
              S    +      ++P ++VIT I   H+  +      +     E    L   G + +
Sbjct: 171 ADESDASFLH-----LQPMVSVITNIDADHMDTYEGDFSRLKKTFVEFIHNLPFYGLLVV 225

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSM 281
             DD   + L         + + ++G S++ D+Q    +Q   Q+  +V+     +G+ +
Sbjct: 226 CGDDPVIQELLPDIS----RQVITYGFSEDNDYQAIAVEQEKTQTRFKVKSDHLAEGEEI 281

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--------- 332
           ++  +  G H   N L  + I      +V +  K L  F   EG G+R++          
Sbjct: 282 DIQLNMPGNHNVLNALAAIAIAVDEKIEVQSIQKGLLNF---EGVGRRFQIYGDYPVGNS 338

Query: 333 ----------ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                       ++    ++ + Y  +P  + A I  +    P    R + +        
Sbjct: 339 VGNPVGDSVGNPDESGTAMLVDDYGHHPREVDATIQAVRAGWPEK--RLVMIY--QPHRY 394

Query: 383 ELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVH--YSETMD 431
             ++  + D  +VLS          Y+     + G     L  ++     V   + E +D
Sbjct: 395 SRTRDLYEDFVDVLSKVDVLILLDVYSAGEEPIIGADGRHLSRSIRNRGKVDPIFVEGVD 454

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456
           G+   ++  ++  D+++ + + + G
Sbjct: 455 GVPAIVKEVIMPNDILMTQGAGNVG 479


>gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK405]
 gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK678]
 gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK160]
 gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1]
 gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK330]
 gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1058]
          Length = 459

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 127/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + + + A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASHTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADLAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|283954368|ref|ZP_06371889.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794167|gb|EFC32915.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 475

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 133/354 (37%), Gaps = 31/354 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           +     +      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLKTNQNLKIILITASFGKTSIKNFLYELLKDNFKSYKTPRSVNTLLGIVADINVN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  + PHI+++  I  AHL  F  +E I S K E   
Sbjct: 204 LTPDTQIYIAEAGARLKGDIDEITRFLEPHISIVGEIGNAHLEYFKSVENICSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       +    +V 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEEDKLISLY------DDKLSFIHSSLKGLEFKVN 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ K  +     +G   AQN+   +   + L   ++   K +   +  E R +     L+
Sbjct: 307 IENKLYDFKSQILGAFNAQNLCACILCANYLGIKLEKIQKQVLSINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +     ++  + +GR++ V   + E+   S+  +I LA+V
Sbjct: 363 REPKFIIDDGFNGNFKGMSTS----YELCKNYKGRKVLVSPGIVEV---SEEENIKLAKV 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++      +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 416 INECFDLAIITAQVNAEIFKKELK--IKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|149181058|ref|ZP_01859558.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
 gi|148851145|gb|EDL65295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
          Length = 443

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 119/311 (38%), Gaps = 34/311 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            +       + T +A+TG+ GKT+T  +L+  +   K T   IG             +  
Sbjct: 98  HSFLGDFMQEFTSVAVTGAHGKTSTTGLLSHVIRGAKPTSYLIGDG---------TGKGE 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D ++ +FE       E R       P  A++T I   H   F+ ++++  A  E+   +
Sbjct: 149 KDAEYFVFEA-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFANVDDVFQAFQEMAMQV 203

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   I    DD   + ++AK        +  +G ++  DFQ R   +  E +  +V ++
Sbjct: 204 KKG--IIACGDDEHLQKIQAKV------PVLFYGFAEENDFQARNVNKTPEGTTFDVFVR 255

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +        G G H   N L  + +      D +   + L+ F   +    R       
Sbjct: 256 NEFFATFSIPGYGDHSIMNALSVIALCHYEDIDTEIVKERLTSFQGVK----RRFSEKKI 311

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   LID+ Y  +P  +K  I    Q  P  E   IAV          +Q+F  + A+ L
Sbjct: 312 GEQILIDD-YAHHPTEIKVTIEAARQKFPDRE--IIAVF--QPHTFTRTQTFLNEFADSL 366

Query: 397 SLYNISHVWLS 407
           S      V+L 
Sbjct: 367 SE--ADQVYLC 375


>gi|254779283|ref|YP_003057388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
 gi|254001194|emb|CAX29160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
          Length = 493

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+            
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELL----------- 275

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWMEVQLQGKSM 281
             D    E    K+    ++ I  +    +        ++  +   + +  E+ L     
Sbjct: 276 --DSKHLE----KAFCYSVEKIKPYAPKDSPLINVSSLVKNIQSTLKGTSFEMLLDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 RFETKVLGEFSAYNIASAILIAKYLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNVES---NEALAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
 gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
          Length = 419

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 126/348 (36%), Gaps = 40/348 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              ++IA+TG+ GK+TT +++   +   K      G+Y       ++  +     D  + 
Sbjct: 78  FDGSVIAVTGTDGKSTTSKLIHHIIGEEKADIG--GNYGTPFSDIVSEGK-----DTVVL 130

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +    + T + RP IAV     P HL     +     +K  +F  +++     L
Sbjct: 131 ELSSFQI----YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKYRLFRNMKEEDPAVL 186

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVV 284
           N+DD        K         Y F  S   D      +    + S + +++ G   +  
Sbjct: 187 NFDDQVVRNTPKKGKR------YYFSLSPLPD----NLEGAYYDGSEIVLKINGFKFKFG 236

Query: 285 H---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               H  G H  QN++ ++    I   D +T  + L  F P      R     +      
Sbjct: 237 LSDIHLKGIHNIQNIMASVVTAYIYGIDPETIEERLKSFKPLP---HRMEYVGSINGVDF 293

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S      ++K A+            R I + G + + G+ S     +L     L ++
Sbjct: 294 YNDSKATTVQAVKKAVQSFD------GKRVILITGGINKGGDFSD-LRDEL-----LNSV 341

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V++ G    ++   +   +     E+++            GDV+++
Sbjct: 342 KEVFIIGRDRKSIYSMIKDYVKAEIKESLEDAVNTAFKKAEKGDVILL 389


>gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
 gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I AITGS GKTTT  M+   L+   ++    G+          +A    + D
Sbjct: 106 AYLISEAPIFAITGSNGKTTTTTMIADVLNHAGQSALLSGNIGFP---ASEVAVDAKEND 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L          RPHIAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 RLIMELSSFQLMG----VDQFRPHIAVITNLMPTHIDYHGSFEEYVNAKWNIQNNMSDKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D      L  K+ A    TI  F   K  D        C +    ++  +G+ +
Sbjct: 219 FLILNGDQEISYDLANKTKA----TILYFSSQKEVD-----GAYCLDG---KLYFEGEYI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +   D D+  + L+ F   +    R +        
Sbjct: 267 MDADQIGVPGLHNVENALATIAVAKLANVDNDSIKETLASFGGVK---HRLQYVGQVNQI 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + N  + + A+S             I + G   + G        D+       
Sbjct: 324 KFYNDSKSTNILACQKALSSFD------NSNLILIAGG-LDRGNEFDDLVPDII------ 370

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     +K A  +  +    ++ +             GDVV++
Sbjct: 371 GLKKLILLGQSADKMKKAAEKAGVSYLDAKDVAEATAIAFKEAKQGDVVLL 421


>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
 gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
          Length = 437

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A I  +   H+  +  +E+   AK  I+          LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYHN---AKVGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+   AL  F   +G   R++          I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKFSSQS---YLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae Rd KW20]
 gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
 gi|1171072|sp|P45063|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
           influenzae Rd KW20]
 gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
          Length = 437

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 138/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+   +      LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAK---VGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+   AL  F   +G   R++          I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  +TM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKFSSQS---YLFDTMEQAIEFLRPTLQSGDMVLL 409


>gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           novicida U112]
 gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
 gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112]
 gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
          Length = 451

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AITG+ GKTTT  +L   L  + K  +  +G    +    + +       D  + E   
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 KYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 AGEQIIKGAESQDIAKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEMLSE 451


>gi|51246782|ref|YP_066666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Desulfotalea psychrophila LSv54]
 gi|50877819|emb|CAG37659.1| probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Desulfotalea psychrophila LSv54]
          Length = 478

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 148/412 (35%), Gaps = 42/412 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-- 130
           +    +G   +P         AL    + +R       + ITG+ GKTTT  +L   L  
Sbjct: 90  EEALEVGRRGLPYLSFP---QALAHFFIRSRSS-----LVITGTHGKTTTCSLLASVLYH 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + +  T+  IG           L +    V  G          E +FL +  RP IAVIT
Sbjct: 142 AKLDPTF-MIGGIVREFNSNFRLGKGKYFVAEGDEYDTAFFDKESKFLHY--RPQIAVIT 198

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           ++   H   F+ +E+I  A A+  + L   G +  N D+     L   +       +  +
Sbjct: 199 SLEFDHADIFADLEQIKRAFAKFIQLLPPDGLLIANLDNPDIAELAQAAPC----PVEGY 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G + +  + L K    S  +  EV   G   +       G H   N L    I+  L  D
Sbjct: 255 GLNSSFPWSLGKISSQSGYTHFEVLKDGTLWDSFTVALPGQHNCLNSLAVCAIMHHLGLD 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + L  F   +   +R      +   T+ID+ +  +P +++  ++ L    P    
Sbjct: 315 TKTINQGLVAFGGVK---RRQEIRGIENNITVIDD-FAHHPTAVRETLAALKAAYPQN-- 368

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----SHVWLSGFHVLAL-------KDAL 418
           R + V          +  F    +E     NI      V L  +    L        D  
Sbjct: 369 RLVTVFEPRTNSSRRTI-FQKQYSESFDSSNIVLLREPVPLVDYPADQLFSSKQLTCDLK 427

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLE 466
            R +        D + L ++S L  GDVV +  SN  GF     RL+  L E
Sbjct: 428 KRGLKAASFANTDQILLHLKSLLQPGDVVAIL-SNG-GFDNIHVRLLESLRE 477


>gi|326561546|gb|EGE11889.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis 7169]
          Length = 486

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 143/415 (34%), Gaps = 48/415 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ +      +       IPV    D+LG L +             IA+ G+ G
Sbjct: 83  ADVVVVSSAIDRQNPEIQAALKAHIPVVRRADMLGELMRYR---------HGIAVAGAHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  +LT+ L+        +      IG  L  +     +    + +  +   +  FL
Sbjct: 134 KTTTTSLLTMMLTEAGLDPTYV------IGGKLNASGKNAALGASRYLVAEADESDASFL 187

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +  +RP   V+T I   H+  +    +++  A  +    +   G   L  DD     +  
Sbjct: 188 S--LRPMACVVTNIDEDHMETYEGSFDKLKQAYVQFLHNMPFYGLAVLCGDDKELYAMID 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
                  + + ++G  K+ D Q         ++   V  + K  + +  +  G H   N 
Sbjct: 246 DIA----RPVITYGLEKHNDVQAVDVIADGTKTHFTVLRKDKKPLPITLNIPGIHNVYNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKR---YRCALNQGFFTLIDESYNANPASM 353
           L  + + +          +A+  F     R +    Y      G   LID+ Y  +P  +
Sbjct: 302 LGAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVLIDD-YGHHPTEI 360

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVW 405
              I    Q       RR+ ++            F         +D   +L +Y+     
Sbjct: 361 AMTIKAARQ---SYPDRRLVMMFQPHRYSRTRDCFSEFVNVLSQVDKLILLDVYSAGEEL 417

Query: 406 LSGFHVLALKDALPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + G     L  +L     V          + +   ++ +L   D+++ + + + G
Sbjct: 418 IKGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDLLMTQGAGNVG 472


>gi|254828161|ref|ZP_05232848.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
 gi|258600547|gb|EEW13872.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
          Length = 447

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 150/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                 D ++  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGNGTKDAEYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD+    L           I  FG  +  +FQ +   + +  +  +V  + + +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSF 255

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+     L  F   +    R      +G   L+D
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVK----RRFSITEKGNQVLVD 311

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 312 D-YAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 133/374 (35%), Gaps = 38/374 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV    +    +              II +TG+ GK+TT  ++   LS +    A  G+
Sbjct: 75  LPVEMAKNAGVLIQGELDFVFPFLTGKIIGVTGTNGKSTTSALIAHLLSKLGYKTALAGN 134

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +   +           D+DF   E+    L       +    HIAV+T I P HL     
Sbjct: 135 FGFPLADFA-----KQDLDFIAAEISSFQL----HWANRFSCHIAVVTNICPDHLDWHGS 185

Query: 203 IEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +    +K  I + L   G     N D         +   L   +  S GK +  D    
Sbjct: 186 FKAYVESKKRIIDLLSSDGYCVYQNKDRELLRTNGCRGAVLRWASDCSTGKCEEQD---- 241

Query: 262 KWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             +     S   ++ + + ++     +    G H  +N  M +  V  L  D +     L
Sbjct: 242 --EIILHDSEAYLRTESRDIKLFSYSILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLL 299

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S F        R      +   T ID+S   N AS   AI+ +        G ++ +LG 
Sbjct: 300 SDFKNLP---HRCEKVGEKKGITFIDDSKGTNVASSITAITSI-------PGTKVIILG- 348

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
               G+     + +LA+ +  +    V L G    A+ +AL  +   +Y    +M+    
Sbjct: 349 ----GKGKGEQYDELAKAVKAHARGAVLL-GAEKGAISEALESAGFRNYILVSSMEEAVY 403

Query: 436 FIQSSLVDGDVVVV 449
              +    GD+V++
Sbjct: 404 CAFNMACPGDIVLL 417


>gi|207092460|ref|ZP_03240247.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 467

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 141 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNKSEIYIA 200

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 201 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR------- 253

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ +     
Sbjct: 254 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEIFIDSVWE 303

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 304 RFETKILGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ +     
Sbjct: 360 IDDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDGV-F 411

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 412 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 459


>gi|148826251|ref|YP_001291004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
 gi|166224762|sp|A5UCX0|MURD_HAEIE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148716411|gb|ABQ98621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
          Length = 437

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 137/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+   E      LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAE---VGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L         +   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----KLTFGEGENQARQTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D    AL  F   +G   R++ A        I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAVGINLDAIRTALRHF---KGLDHRFQLAHQANGVRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA+S L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALSGL-----YVEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKLSSQS---YLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|56684727|gb|AAW22050.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori]
          Length = 493

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 136/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK+ L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 HLKVIAITGSFGKTSTKKFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ L     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLLDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 RFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLHKGRKVIVTPGLVESNTES---NEVLAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASKLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|49475854|ref|YP_033895.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella henselae str.
           Houston-1]
 gi|59798262|sp|Q6G2Q6|MURC_BARHE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49238662|emb|CAF27908.1| UDP-N-acetylmuramate--alanine ligase [Bartonella henselae str.
           Houston-1]
          Length = 475

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 147/409 (35%), Gaps = 51/409 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +        +     +P+    ++L  L +   A         IA+ G+ GKTTT  M+
Sbjct: 75  AIKKTNPEYIAAKERHLPLVKRAEMLAELMRFRRA---------IAVGGTHGKTTTTSMI 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I      I    T ARM    D+ + E   S    ++     +   I
Sbjct: 126 AALLDAGSFDPMVIN--GGIINAYGTNARMGEG-DWMVVEADESDGTFLK-----LPADI 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I   HL ++     +  A  +  E +   G   L  D    + L ++   +  + 
Sbjct: 178 AVVTNIDREHLDHYGSFAAVRDAFRQFVENVPFYGFAVLCIDHPEVQSLASR---IDDRW 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSME---VVHHGIGYHMAQNMLMT 299
           + ++G +  AD +        ++++ +V ++    G+  E   +V    G H   N    
Sbjct: 235 VITYGANPQADIRFLNLSMDGQKTYFDVFMRSRKTGRETELKNLVLPMSGQHNVSNATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    ++  K L+ F   +    R    +       I + Y  +P  +KA   V
Sbjct: 295 IAIAHELGISNESIKKGLAGFGGVK----RRFTQIGSWRGVEIFDDYGHHPVEIKA---V 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFH-----------IDLAEVLSLYNISHVWLSG 408
           L       +GR IA+     +    S+ +H            D+  +  +Y      ++G
Sbjct: 348 LCAARESAKGRVIAI----AQPHRYSRLYHLFDDFAACFNDADIVLIAPVYAAGEEPITG 403

Query: 409 FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           F    L + +  + H  V   + ++ +   + +    GD VV   + + 
Sbjct: 404 FGARELVEHIQMAGHRDVRLIDCLEDVVSIVSTFSKSGDYVVFLGAGNI 452


>gi|121601881|ref|YP_989227.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella bacilliformis
           KC583]
 gi|166222956|sp|A1UTC4|MURC_BARBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|47779263|gb|AAT38531.1| MurC [Bartonella bacilliformis]
 gi|120614058|gb|ABM44659.1| UDP-N-acetylmuramate--alanine ligase [Bartonella bacilliformis
           KC583]
          Length = 475

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 150/435 (34%), Gaps = 59/435 (13%)

Query: 47  KGPHYD-GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKL 98
           KG +   GH     A   G   VVV             +     +PV    ++L  L + 
Sbjct: 51  KGINVHIGH----QAKNLGEAEVVVISTAIKKTNPEYIAAKEKHLPVVKRAEMLAELMRF 106

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
             A         IAI G+ GKTTT  M+   L +       I      I    T ARM  
Sbjct: 107 RQA---------IAIGGTHGKTTTTSMVAALLDAGNFDPMVIN--GGIINAYGTNARMGN 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                + E   S    ++     +   I V+T I   HL ++   + +  +  +  E + 
Sbjct: 156 GNWM-VVEADESDGTFLK-----LPADIVVVTNIDSEHLDHYGSFDAVRESFRQFVENVP 209

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--- 275
             G   +  D    + L ++   +  + + ++G +  AD +   +   ++++  +V    
Sbjct: 210 FYGFAVMCLDHPEVQTLASR---IDDRWVITYGANPQADVRFLNFSMKNKKAHFDVLIRS 266

Query: 276 ----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
               +Q +  ++V    G H   N    + I   L    +   K L+ F   +   +R+ 
Sbjct: 267 RKTGIQTELRDLVLPMSGKHNVSNATAAIAIAHELGISDEVIRKGLAEFGGVK---RRFT 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMG 382
              +     + D+ Y  +P  +KA +    +           PH   R   +  D     
Sbjct: 324 QTGSWRGIDVFDD-YGHHPVEIKAVLRAARESTNGQVIAIAQPHRYSRLCNLFDDFTTCF 382

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSS 440
             + +       +  +Y      ++GF    L + +  + H  V   + ++ +   + + 
Sbjct: 383 NDADTIM-----IAPVYAAGEEPITGFGSKELVEHIQMASHCDVRLIDDLEDVVSIVSTV 437

Query: 441 LVDGDVVVVKSSNSC 455
              GD VV   + S 
Sbjct: 438 AKSGDYVVFLGAGSI 452


>gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK72]
          Length = 459

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+  AL++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQNGLLSGNIGYP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +E  A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGRVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        S    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|170076738|ref|YP_001733376.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. PCC 7002]
 gi|169884407|gb|ACA98120.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7002]
          Length = 488

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 144/416 (34%), Gaps = 46/416 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +        +  SL   +F   DVL AL               +A+ G+ GKTTT  ++
Sbjct: 89  AIGQENPEFQAAQSLGCHIFHRSDVLSALVAEY---------DSVAVGGTHGKTTTSSLI 139

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        +   +  I V   +     +   G     ++   E       +RP +
Sbjct: 140 GYIF--------LVAGVDPTIIVGGEVDAWDGNARLGQGNYLVAEADESDGTLVKLRPQL 191

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T I   H  ++  ++++        +  ++   +    D          +  +  + 
Sbjct: 192 GVVTNIELDHPDHYQSLDQVVEIFQTFAQQCDR---LIACVDCPTIA-----TGVVPYQV 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            Y     + AD+        +  +   +  +G  + E+    +G H   N L  +     
Sbjct: 244 GYGLQNLEQADYWATDIHYGATSTQATIWERGDRLGEINLALLGAHNLSNALGAIAAARC 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   +AL+ F    G  +R+         TLID+ Y  +P+ ++  +   +++  
Sbjct: 304 CGVPFEPIAEALASFQ---GAKRRFEIRGQYQGITLIDD-YAHHPSEIEVTLQA-ARLRA 358

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLALKD 416
               R +A+          +Q+F  + A+     +   I+ ++ +G          AL+ 
Sbjct: 359 GQGRRVVAIF--QPHRYSRTQAFFDEFAKAFKNADVTIITDIYSAGEKNVDNLTGEALQQ 416

Query: 417 AL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A+   +   V Y   +  L  ++   L  GD+V++  +      + I  LL +  A
Sbjct: 417 AIAHQQDGDVAYYPDLQSLPTWLAPQLQTGDLVLLLGAG--NLNQTIPSLLAQLSA 470


>gi|308062061|gb|ADO03949.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Cuz20]
          Length = 493

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 134/345 (38%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+ K  L   L +    +A   S N  +G+   + + +    D  I 
Sbjct: 167 NLKVIAITGSFGKTSIKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSDIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|296112510|ref|YP_003626448.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|295920204|gb|ADG60555.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|326564127|gb|EGE14365.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           46P47B1]
 gi|326564829|gb|EGE15037.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           12P80B1]
 gi|326566496|gb|EGE16643.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           103P14B1]
 gi|326568016|gb|EGE18108.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC7]
 gi|326570680|gb|EGE20714.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC1]
 gi|326571236|gb|EGE21259.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC8]
 gi|326573081|gb|EGE23054.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577221|gb|EGE27114.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           101P30B1]
 gi|326577784|gb|EGE27656.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis O35E]
          Length = 486

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 143/415 (34%), Gaps = 48/415 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ +      +       IPV    D+LG L +             IA+ G+ G
Sbjct: 83  ADVVVVSSAIDRQNPEIRAALKAHIPVVRRADMLGELMRYR---------HGIAVAGAHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  +LT+ L+        +      IG  L  +     +    + +  +   +  FL
Sbjct: 134 KTTTTSLLTMMLTEAGLDPTYV------IGGKLNASGKNAALGASRYLVAEADESDASFL 187

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +  +RP   V+T I   H+  +    +++  A  +    +   G   L  DD     +  
Sbjct: 188 S--LRPMACVVTNIDEDHMETYEGSFDKLKQAYVQFLHNMPFYGLAVLCGDDKELYAMID 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
                  + + ++G  K+ D Q         ++   V  + K  + +  +  G H   N 
Sbjct: 246 DIA----RPVITYGLEKHNDVQAVDVIADGTKTHFTVLRKDKKPLPITLNIPGIHNVYNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKR---YRCALNQGFFTLIDESYNANPASM 353
           L  + + +          +A+  F     R +    Y      G   LID+ Y  +P  +
Sbjct: 302 LGAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVLIDD-YGHHPTEI 360

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVLSLYNISHVW 405
              I    Q       RR+ ++            F         +D   +L +Y+     
Sbjct: 361 AMTIKAARQ---SYPDRRLVMMFQPHRYSRTRDCFSEFVNVLSQVDKLILLDVYSAGEEL 417

Query: 406 LSGFHVLALKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + G     L  +L     V          + +   ++ +L   D+++ + + + G
Sbjct: 418 IKGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDLLMTQGAGNVG 472


>gi|167465174|ref|ZP_02330263.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 342

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 29/315 (9%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI-----PVFGVDDVLGA------LNKLAVAARLRS 106
              + KGA + + +         L +     P   V+ V         L++  + ARL +
Sbjct: 44  EKLIAKGARVYLGHEASHVEGADLVVYSTALPKDNVEIVAAEARNIPILHRSQMLARLMN 103

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   IA+ G+ GKTTT  M+ + +             +    +   +  +  +   G  E
Sbjct: 104 ERKGIAVAGAHGKTTTSSMIALVMEKCGA--------DPTYIIGGEIMNIGSNAKAGTGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P +A++  I   HL N+ G  E +  A A+    ++  G   +
Sbjct: 156 YVVAEADESDGTFLQYYPTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGGKAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD++   +     +     + ++G   +AD+Q         +    V  +G+++ ++ 
Sbjct: 216 CKDDAYIREMIPYVES----EVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENLGKIE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L TL I        D    A+  FH   G  +R++         +ID+
Sbjct: 272 LSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFH---GAKRRFQVMGEINDILIIDD 328

Query: 345 SYNANPASMKAAISV 359
            Y  +P  + A IS 
Sbjct: 329 -YAHHPTEISATISA 342


>gi|323441520|gb|EGA99172.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O46]
          Length = 437

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 155/431 (35%), Gaps = 65/431 (15%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVPNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-- 368

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLVDGD-----------VVVVKSSNSCGF 457
               +  ++  +       T+  L   I+ +SL++ D           VV+   +     
Sbjct: 369 ---EIFGSIRENTGAL---TIQDLIDKIKGASLINEDSINVLEQFDNAVVLFMGAGDIQ- 421

Query: 458 YRLINLLLEEF 468
            +L N  L++ 
Sbjct: 422 -KLQNAYLDKL 431


>gi|315303393|ref|ZP_07874000.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313628236|gb|EFR96762.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 447

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 143/413 (34%), Gaps = 64/413 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + +     L +PV      LG L             T IAITGS GKT+T  +
Sbjct: 68  NAFPDTHEEIERAMELDLPVIRYHKFLGQLID---------GYTSIAITGSHGKTSTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  + +I+ T   IG                   ++   E        + +     +P 
Sbjct: 119 LSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFALEACEYQRHFLAY-----KPT 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   F  ++++ +A   + + ++K        DD+    L          
Sbjct: 165 YAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL--GDDAELRKLTLDV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I  FG  ++ +FQ +   + +  +  +V  + + +        G H   N L  + +  
Sbjct: 217 PIIYFGFGEDNEFQAKNVIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCD 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+     L  F   +      R ++ +    ++ + Y  +P+ ++A ++   Q  
Sbjct: 277 YEGLPVEAVKAELKTFEGVK-----RRFSITEKSNQVLVDDYAHHPSEIRATVNAARQ-- 329

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
            + + + +AV          +++F    A+ L+L     V+L           G   +A 
Sbjct: 330 KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADEVYLCDIFGSAREKTGNLTIAD 385

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLIN 462
                +  H+   E  + L  +       G V++   +         + ++++
Sbjct: 386 LAHKTKGNHIIKEEHTEELLKY------PGAVILFMGAGDVQKFQAAYEKVLD 432


>gi|312140141|ref|YP_004007477.1| UDP-N-acetylmuramate-l-alanine ligase murc [Rhodococcus equi 103S]
 gi|325676978|ref|ZP_08156650.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
 gi|311889480|emb|CBH48797.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Rhodococcus equi 103S]
 gi|325552278|gb|EGD21968.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
          Length = 498

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 141/427 (33%), Gaps = 50/427 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +    +  IPV     VL +L +             + ++G+ GKT+T  M
Sbjct: 81  AAIPKDNPELVEAAARGIPVILRPAVLASLMQGHR---------TLLVSGTHGKTSTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            ++    V   L     +   G  ++ ++   E         P 
Sbjct: 132 LVVALQHCG--------FDPSFAVGGELNEAGTNAHHGTGDVFVAEADESDGSLLQYDPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++T +   HL  F   +       +    +   G +    DD     L  ++   G  
Sbjct: 184 VVIVTNVEADHLDFFGTSDAYVQVFDDFVARIAPGGLLVACLDDPGSAALARRTIEAGRD 243

Query: 246 --TIYSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMA 293
              +  +G +             +L  W+        +++  G+           G HMA
Sbjct: 244 DVRVVGYGTADGVAAAGPVPVGVELVSWEARDTGGVAQIRFAGEDAARTLRLGVPGKHMA 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L       A +D  ++ L+ F    G  +R++    +    + D+ Y  +P  +
Sbjct: 304 LNALAALLAGRGAGASIDELLEGLAGFG---GVHRRFQFTGRERGVRVFDD-YAHHPTEV 359

Query: 354 KAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
           +A +   S +       GR + V      +   + +F  +  E         VL +Y   
Sbjct: 360 RAVLGAASDLVDDDRQPGRVVVVF--QPHLYSRTVTFAQEFGEALDLADEVVVLDVYGAR 417

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRL 460
              L G     +  ++ +   VHY      +   + S    GDVV+   +        ++
Sbjct: 418 EEPLPGVSGALVAQSVTK--PVHYQPDRSQVPRQVASLAEPGDVVITMGAGDVTMLGGQI 475

Query: 461 INLLLEE 467
           ++ L   
Sbjct: 476 LDALRAR 482


>gi|57237640|ref|YP_178888.1| Mur ligase family protein [Campylobacter jejuni RM1221]
 gi|121613032|ref|YP_001000484.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005421|ref|ZP_02271179.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|57166444|gb|AAW35223.1| Mur ligase family protein [Campylobacter jejuni RM1221]
 gi|87249533|gb|EAQ72493.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315058249|gb|ADT72578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 475

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 132/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR- 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINNN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  ++PHI+++  I   HL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNVHLEYFKSVENILSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +   G K I  +      D +L       E    +V 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEGDKLISLY------DEKLSLIHSSLEGLEFKVD 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYKLCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +      GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|289434885|ref|YP_003464757.1| hypothetical protein lse_1520 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171129|emb|CBH27671.1| murC [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 157/462 (33%), Gaps = 89/462 (19%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           Q  +   S D  +I       A  G  + D H+ I  A++ G                  
Sbjct: 47  QIPITTFSAD--NIKSGLTIIA--GNAFPDTHEEIERAMELG------------------ 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV      LG L             T IAITGS GKT+T  +L+  + +I+ T   IG 
Sbjct: 85  IPVIRYHKFLGQLID---------GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGD 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                             D+   E        + +     +P  A++T I   H   F  
Sbjct: 136 G---------TGSGTKGADYFALEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKS 181

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++++ +A   + + ++K        DD     L           I  FG  +  +FQ + 
Sbjct: 182 VDDVFNAFETLGKQVKKAVFAL--GDDVELRKLTLDI------PIIYFGFGEENEFQAKN 233

Query: 263 WKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             + +  +  +V  + + +        G H   N L  + +       VD     L  F 
Sbjct: 234 VIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFE 293

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +    R     ++G   L+D+ Y  +P+ ++A ++   Q   + + + +AV       
Sbjct: 294 GVK----RRFSITDKGKQVLVDD-YAHHPSEIRATVNAARQ--KYPDKKIVAVF--QPHT 344

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMD 431
              +++F    A+ L+L     V+L           G   +A      +  H+   E  +
Sbjct: 345 FTRTRTFLQGFADSLNL--ADEVYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTE 402

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLINLLLEEF 468
            L  +         V++   +         + ++++   E F
Sbjct: 403 ELLKY------PDAVILFMGAGDVQKFQAAYEKVLD--QEAF 436


>gi|81428252|ref|YP_395252.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|109892709|sp|Q38XY8|MURC_LACSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78609894|emb|CAI54941.1| UDP-N-acetylmuranoyl-L-alanine synthetase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 444

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 139/389 (35%), Gaps = 60/389 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + +PV      LG L K           T I + G+ GKT+T  +L   LS + KT   
Sbjct: 86  EMGLPVVRYHQFLGELLK---------NYTSIGVAGAHGKTSTSGLLAHVLSGVAKTSFL 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +G             +   D  F  FE       E R       P   ++T I   H   
Sbjct: 137 VGDG---------TGKGIKDAQFFAFEA-----DEYRRHFLAYSPDYLIMTNIDFDHPDY 182

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           ++GIE++  A       ++K   IF   DD     LK+ +       IY +G   N DFQ
Sbjct: 183 YTGIEDVFDAFQSEAYKVQKG--IFAWGDDPELRKLKSNA------PIYYYGTKSNDDFQ 234

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            R  ++  E S  +     +++   H    G H   N L  + +  +   D    ++ L+
Sbjct: 235 ARNIQRTVEGSEFDAYYHDENIGHYHVPLYGEHNVLNSLAVIAVSYLEKIDGREVVRELA 294

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   + R    + A      T+ID+ Y  +P+ +KA +    Q   + + + +AV    
Sbjct: 295 DFKGVKRRFTEKKVA----DVTIIDD-YAHHPSEIKATLDAARQ--KYPDRQIVAVF--Q 345

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----------LKDALPRSIHVHYS 427
                 + +   D A  L+L     V+L+     A           L   + +   V   
Sbjct: 346 PHTFTRTIALMDDFAASLNL--ADEVFLTDIFSSAREKSGKVSSADLGAKITKGGRVLKL 403

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + M  L  F Q       VVV   +    
Sbjct: 404 DNMSPLLDFEQP------VVVFMGAGDVQ 426


>gi|327330618|gb|EGE72364.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL097PA1]
          Length = 471

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 137/403 (33%), Gaps = 29/403 (7%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L       +      + +      +R+    +  + E   S    +++ + +V
Sbjct: 130 TGMVATMLDCAGADPSYA--IGSPLAATGMSSRLGGG-EAFVVEADESDGSFLQYPSQIV 186

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 187 -----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLA 413
           +   G+GR IA       +   ++ F  +    L          +Y      + G     
Sbjct: 357 V-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEL 413

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 414 VHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|4033456|sp|O51926|MURC_BUCAP RecName: Full=Putative UDP-N-acetylmuramate--L-alanine ligase;
           AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 155/422 (36%), Gaps = 55/422 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +    +IP+    ++L    +             IA++G+ GKTT   M
Sbjct: 84  SAIPSDNPEIKAAKKKNIPILLRAEMLQIFMQFKFG---------IAVSGTHGKTTLLAM 134

Query: 126 LTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +   L+   +  T      I S N+H  +  +         + I E   S   +  FL  
Sbjct: 135 IFDILNQNKLDPTVINGGLIKSINSHAKLGFS--------KYFIAEADES---DGSFLC- 182

Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P  A+IT I P H+ N+    + +     +    +   G   L  D+     +  K 
Sbjct: 183 -LNPTTAIITNIEPDHIDNYNGEFKLLKKTFLDFLNKIPSYGIAILCTDNKAILNILPKI 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNML 297
                  + ++G +K+A+F++  +KQ    S   +  + +  ++E++ +  G H A N  
Sbjct: 242 KC----KVITYGFNKSAEFRITSYKQSDFISNFTLIRKKQLNNLEIILNLPGEHNALNAT 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNANPAS 352
             +   +      +   ++L  F     R +       +    Q    ++   Y  +P  
Sbjct: 298 AAIAFATYQKIPDEKIYQSLKNFKGTSRRFEYVGKLFIKKKSIQNKSVMLINDYGHHPTE 357

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           +   I  + +  P  +   I +          +++ + D  ++LS          Y+ + 
Sbjct: 358 LSETIKTIRKSWP--KKNLIMIF--QPHRYTRTRNLYFDFIKILSQVDSLLILNVYSANE 413

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++SG    +L   + +   +V      + +  ++   L   D+++++ +       +IN
Sbjct: 414 SFISGADSFSLYSDIKKIKKNVILVTNRNLILNYLLPHLNGNDIILIQGAGDI--DTIIN 471

Query: 463 LL 464
            +
Sbjct: 472 KI 473


>gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
          Length = 461

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVF 86
           D++     EA  A+    + GH      +   A  VVV      +   +A    L IPV 
Sbjct: 40  DAKESETAEALRALGATVHIGH--AAGHLADDATCVVVSSAIRADNPELARAAELGIPVV 97

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D L         ARL      IA+ G+ GKTTT  ML ++L  +    +     +  
Sbjct: 98  HRSDAL---------ARLMDGLRPIAVAGTHGKTTTTSMLAVSLGELGLKPSYAIGGDLD 148

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +     L         G  E+ ++   E     H   P +A++  +   H +N++ ++EI
Sbjct: 149 VPGSNAL--------HGDGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEI 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            ++       +   GT+ ++ D      L ++   L    + ++G+ ++AD ++      
Sbjct: 201 YASFETFAGRIVPGGTLVISADHEGARELTSR---LSGVRVVTYGEREDADVRVLSVVAQ 257

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +S + V L G+ +       G H A N +  L     L         AL+ +   +  
Sbjct: 258 GLKSEVTVLLDGQEITFAVSVPGRHYAHNAVAALAAGVALGVPAAELAPALAAYTGVK-- 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R +         +I +SY  +P  M A +  +   +      RI V+     +   +Q
Sbjct: 316 -RRLQLKGEARGVQVI-DSYAHHPTEMTADLEAMRSAAGDA---RILVVFQ-PHLFSRTQ 369

Query: 387 SFHIDLAEVLSLYNISHV---------WLSGFHVL-ALKDALPRSIHVHYSETMDGLFLF 436
               ++ + L+L + S V          + G      +  A      V        +   
Sbjct: 370 ELGTEMGQSLALADASVVLDIYPAREDPIPGVTSELIIAAARSAGADVTALHDKAEVPGT 429

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           I      GD+V+   +   
Sbjct: 430 IAGMAKPGDLVLTMGAGDV 448


>gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3549]
          Length = 451

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AITG+ GKTTT  +L   L  + K  +  +G    +    + +       D  + E   
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLNPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 RYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 AGEQIIKGAESQDIVKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEMLSE 451


>gi|313791784|gb|EFS39895.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA1]
 gi|313802129|gb|EFS43361.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA2]
 gi|313838461|gb|EFS76175.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL086PA1]
 gi|314963082|gb|EFT07182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA1]
 gi|315077546|gb|EFT49604.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA2]
 gi|327452866|gb|EGE99520.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL092PA1]
          Length = 471

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 134/403 (33%), Gaps = 29/403 (7%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L       A              ++      +  + E   S    +++ + +V
Sbjct: 130 TGMVATMLDCAG---ADPSYVIGSSLAATGMSSHLGGGEAFVVEADESDGSFLQYPSQIV 186

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 187 -----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFHVLA 413
           +   G+GR IA       +   ++ F  +    L          +Y      + G     
Sbjct: 357 V-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEL 413

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 414 VHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|217032142|ref|ZP_03437641.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298736442|ref|YP_003728968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
 gi|216946132|gb|EEC24741.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298355632|emb|CBI66504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
          Length = 493

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQATFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+ V+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITHLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ L     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLLDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 SFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   +GR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLHKGRKVIVTPGLVESNTES---NETLAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|323439606|gb|EGA97326.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O11]
          Length = 437

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 155/431 (35%), Gaps = 65/431 (15%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-- 368

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLVDGD-----------VVVVKSSNSCGF 457
               +  ++  +       T+  L   I+ +SL++ D           VV+   +     
Sbjct: 369 ---EIFGSIRENTGAL---TIQDLIDKIKGASLINEDSINVLEQFDNAVVLFMGAGDIQ- 421

Query: 458 YRLINLLLEEF 468
            +L N  L++ 
Sbjct: 422 -KLQNAYLDKL 431


>gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 451

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 135/366 (36%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAITG+ GKTTT  +L   L  + K +   +G    +    + +       D  + E   
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +   +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKDDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 RYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 ADEQIIKGAESQDIVKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEILSE 451


>gi|171913124|ref|ZP_02928594.1| UDP-N-acetylmuramate--alanine ligase [Verrucomicrobium spinosum DSM
           4136]
          Length = 770

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 146/419 (34%), Gaps = 45/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V        +     IP+    + L A+           +   + + G+ GKTTT  M
Sbjct: 82  SAVKPGNPAYEAAYRHGIPLVRRAEALAAIMA---------RKHGVVVAGTHGKTTTSSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L                I +  + A      +  + E   S    ++F      P 
Sbjct: 133 AAHVLRVGG--AKPSHYVGAEIPILGSNAHWDDAGELFVAEGDESDGTLVKF-----EPR 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+I  I   HL  +  + EI     ++ E  + +G      +D     L       G K
Sbjct: 186 HAIILNIEAEHLDYYEDLNEIKLVFRQLLE--KTSGYSVYCAEDPVATELCE-----GRK 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304
              S+G S++ +F     +    Q+  EV  +G+ +  V  GI G H   N L  + +  
Sbjct: 239 NGISYGWSRDHNFSANILELRPAQTRYEVFQKGELLGEVLLGIPGRHNVLNSLAAISLAV 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +     +  +AL  F    G  +R+    +   + +ID+ Y  +P  +KA ++    ++
Sbjct: 299 SVGVPFSSIKQALESF---RGARRRFEVKYSGSQYQIIDD-YGHHPTEIKATLATAKALN 354

Query: 365 PHGEGRRIAVLGDMCEM-------GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD 416
           P    +RI  L              E   +F+ +D+  V  +Y  S   L G     + +
Sbjct: 355 P----KRIVCLFQPHRYSRTQLLKQEFGGAFNDVDVLCVTDVYAASEKPLPGVSGETILE 410

Query: 417 ALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +      +  H +  +      I S L  GD+++   + +     + + L  +    +
Sbjct: 411 EVKLQAPGVECHSTPKLLNARDLIGSKLRPGDLLITLGAGNVH--EVGSALARDLKVAE 467


>gi|148244841|ref|YP_001219535.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166224747|sp|A5CW53|MURC_VESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146326668|dbj|BAF61811.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 469

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 149/417 (35%), Gaps = 47/417 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   V     L+IP+    ++L  L +             IAI G+ GKTTT  +
Sbjct: 79  SAIKDNNPEVIKAHQLNIPIVPRAEMLAELMRFRFG---------IAIAGTHGKTTTTSI 129

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +T  L  + +  TY  IG   N  G+   L     + D+ I E   S    +   + L  
Sbjct: 130 ITHILNMAELDPTY-IIGGILNSSGINAKLG----ESDYLIAEADESDASFLHLQSML-- 182

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +VIT I   H++ ++   +++  A       L   GT  +  DD     + +  H  
Sbjct: 183 ---SVITNIDHEHMATYNNDYQKLKDAFVSFSANLPFYGTCIICIDDKGVNEILSDIH-- 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300
             + I ++G +  AD Q    KQ   Q   ++      K   +  + IG H   N L  +
Sbjct: 238 --RPIITYGFNNGADIQAINIKQVDMQMHFDIIYDKYTKPFPIKLNLIGKHNILNTLAAI 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI   L   V+   KAL+ F     R   +           + + Y  +P  + A    L
Sbjct: 296 GICCELNIKVNIIQKALANFSGVARRLDYHGKLNINNLQISLFDDYGHHPKEISAVFESL 355

Query: 361 SQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                         PH   R   +  +   +   + +       +L +Y      ++  +
Sbjct: 356 KDTYQNKRLVVIFQPHRYSRTHDLFDNFTRILSTADAL-----ILLDIYPAQEKPIAHIN 410

Query: 411 VLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              L DA+ +  S++    +    +   + + + + DV++   +       L  LL 
Sbjct: 411 SSTLADAIRKYSSLNPVVIKNQKKILDILPNIVHNNDVLLTLGAGDIH--TLPELLK 465


>gi|302391532|ref|YP_003827352.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
 gi|302203609|gb|ADL12287.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
          Length = 469

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 151/420 (35%), Gaps = 51/420 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV+++ +      L   V    + L  L +  +  +L SK   I+I+G+ GKTTT 
Sbjct: 63  GADEVVLSSAIPEDNPEL---VKAKKEGLPILKRAEMVGKLMSKQQGISISGTHGKTTTT 119

Query: 124 EMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            M    L          +      I   N  +G          + D  +  +        
Sbjct: 120 AMAATVLEKNSLDSTILVGGKLDLISGSNAKLGTGDYFITEADESDGSLLFM-------- 171

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                   P I V+T I   HL  +    EI    ++    L   G   ++ DD+    +
Sbjct: 172 -------DPKIGVVTNIEADHLDYYESCSEIIDTFSKFLNSLPSDGVGIVSLDDNEIRDM 224

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQ 294
             +        + ++G +  A+   +  +     S  +  + Q +  E+  +  G H   
Sbjct: 225 VDRVDT----DLITYGLNNKAEIMAKDIELQEFGSKSVIYRYQDRLGELKLNVPGKHNLS 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +GI   +  +     +AL  F   +   +R+          L+D+ Y  +P  ++
Sbjct: 281 NALAVIGIGLHIGLEFSKIAEALKDFTGVK---RRFEKLGKYRGAVLVDD-YAHHPTELE 336

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWL 406
           A ++  + +      R IAV             + E S +F   D   +  +Y      +
Sbjct: 337 ATLAAANNMDFE---RIIAVF-QPHRYTRTKFLLEEFSLAFGDADEVIITDIYASGEEPI 392

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G     + + + + +     +   +D ++ +++  +  GD+V+   +     +++ + L
Sbjct: 393 PGVKAEKIAELINQRVFQKAKFIAELDKVYDYLKDRIGAGDLVLTLGAGDV--WKVGDRL 450


>gi|172037288|ref|YP_001803789.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|254765994|sp|B1WQL2|MURC_CYAA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171698742|gb|ACB51723.1| UDP-N-acetylmuramate-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 518

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 151/416 (36%), Gaps = 49/416 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N    A+      P+F   DVL AL +             IA+ G+ GKTTT  ++
Sbjct: 119 AIAHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTTTSSLI 169

Query: 127 TIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              L  + +  T    G  +   G     AR+     + + E   S     +       P
Sbjct: 170 GYMLLKADLDPTIIVGGEVDAWEGN----ARIGAKGGYLVAEADESDGSLTKH-----YP 220

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +I ++T I   H  ++  ++++     +IFE   +   +    D          +  L  
Sbjct: 221 NIGIVTNIELDHPDHYQTLDDVVKTF-QIFE--TQCDLLIGCLDCETV------ASELTP 271

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
              YS   SK AD+ ++      + ++ EV  +G  + E+     G H   N L  + + 
Sbjct: 272 AITYSLDPSKGADYTVQNVTSNHKGTFAEVWERGNYLGEIRLTIPGSHNLSNALAAIAVG 331

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             L  +      AL  F    G  +R+         T ID+ Y  +P+ ++A +S     
Sbjct: 332 RKLGLNFAVIADALFTF---AGAKRRFEQRGQCNGITFIDD-YAHHPSEIEATLSAARSK 387

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLA 413
           +      R +A+          + +F           DL  +  +Y+   V L       
Sbjct: 388 VDGETISRVVAIF--QPHRYSRTATFLKEFATCFKDADLVILTDIYSAGEVNLHNISGQD 445

Query: 414 LKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L +A+  +   V Y  ++ GL   I   +  GD+V+   +      ++I  ++  +
Sbjct: 446 LAEAVENNHSQVIYEPSLKGLPQVIPDLIKPGDLVLFLGAG--NLNQIIPEMINTY 499


>gi|154498342|ref|ZP_02036720.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
 gi|150272653|gb|EDM99831.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
          Length = 491

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 138/421 (32%), Gaps = 51/421 (12%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA LV+           +S      IPVF      GA+ +    A        + I+G+
Sbjct: 104 KGAKLVIRTAAAHDDNPEISGAHARGIPVFERAQAWGAIMRGYKNA--------LCISGT 155

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M T          A     +  + +  TL  +      G  +  +    E  
Sbjct: 156 HGKTTTTSMCTHI--------AMAAQADPTVMIGGTLPLLGAGHRVGRGDTIILESCEYC 207

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P +AVI  I   HL  F  +E++  +     + + + G I  N DD       
Sbjct: 208 NSFLSFFPTVAVILDIEADHLDFFKDLEDVEKSFRTFADLVPEDGVIVANRDDENTM--- 264

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQN 295
             +     + + +FG  +  D               +V  +G+    V     G H  +N
Sbjct: 265 -HTLEGEARPMVTFGLEEG-DVHAANLTWSRGLPTFDVIWKGQPFAHVSLRVPGEHNVKN 322

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L       +L        + LS F    G  +R+    +     + D+ Y  +P  +KA
Sbjct: 323 ALAAAASAIVLGMPAKAVEEGLSAF---RGAARRFEHKGSYHGAEVYDD-YAHHPGELKA 378

Query: 356 AISVLS---------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +S +S            PH   R  A+  D  ++         D+  +  ++       
Sbjct: 379 LLSAVSGLGYDRIICAFQPHTYSRTKALFDDFVQVLRE-----PDVTLLAEIFAAREDNT 433

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G     L   +P S    Y  T+  L   +      GD+++   +     Y     L++
Sbjct: 434 IGISSRDLAAQIPGS---RYFATLPELTDALAELAQPGDLILTVGAGDI--YTAGEALVQ 488

Query: 467 E 467
            
Sbjct: 489 R 489


>gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 490

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 162/448 (36%), Gaps = 56/448 (12%)

Query: 33  DSRSIAPQEAFFAIKGPHYD---GHDF--ILHAVQKGAGLVVVNTDMVASIGSLS----- 82
           DSR++       A+K        GH    I          VVV+T +      L      
Sbjct: 56  DSRTV------LALKAQGAHIALGHRAENIEQ-FDGDPTAVVVSTAIRRDNPELVAAQER 108

Query: 83  -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +PV    + L AL              +  + G+ GKT+T  MLT+AL        C  
Sbjct: 109 GVPVLRRAEALAALMA---------DHRVACVAGTHGKTSTTSMLTVALQH------CRL 153

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             +  IG  L  +        G   +  +   +  FL     P +AV+T + P HL +  
Sbjct: 154 DPSFAIGGDLNESGANAHHGDGGVFVAEADESDGSFLV--FAPSVAVVTNVEPDHLDHHG 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQ 259
             E          E +E  G +    DD+   LL  ++ A G++ +  +G   + + D +
Sbjct: 212 TAEAYTEVFQRFVERIEPGGVLIACADDAGAALLADQAEAAGVR-VRRYGHEVTADGDAR 270

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +  ++       + V++ G  ++V     G HMA N +  L     L A ++  ++ L+ 
Sbjct: 271 MVGYRPEHGSGVVTVEVSGDRLDVQVAVPGEHMAANAVAALLAGLELGAPLEGLLEGLAA 330

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G  +R+          + D+ Y  +P  + A +         G+GR + V     
Sbjct: 331 FG---GVRRRFEFKGRADGVRVYDD-YAHHPTEVDAQLRAAR--PVVGDGRLVVVF--QP 382

Query: 380 EMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSET 429
            +   + +F  + A          VL +Y        G     + +++P  +  VHY  +
Sbjct: 383 HLYSRTAAFSGEFATALGLADEVVVLDVYGAREDPQPGVTGELIAESVPLPAERVHYEAS 442

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                  +   +  GD+V+   +     
Sbjct: 443 FTAAAPLVAGLVQPGDLVLTMGAGDVTM 470


>gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 86-028NP]
 gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           influenzae 86-028NP]
 gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2846]
          Length = 437

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 139/346 (40%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+   E      LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAE---VGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L         +   SF ++ +AD+ L+   +  +Q  M   EV L  + +  
Sbjct: 212 NED----KLTFGEGENQARQTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEVT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+   AL  F   +G   R++          I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAVGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G   + L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGVQLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|288958924|ref|YP_003449265.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
 gi|288911232|dbj|BAI72721.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
          Length = 472

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 148/424 (34%), Gaps = 51/424 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +   GA ++VV++ +      +       +PV    ++LG L +L  A      
Sbjct: 57  FVGHRAENIAGAAVIVVSSAVKRDNPEVVAARAALVPVVRRAEMLGELMRLKWA------ 110

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  M+   L         I     +     T        D+ + E 
Sbjct: 111 ---IAIGGTHGKTTTTSMVGHMLEHANLDPTVINGGIINAYGSNTRLGTG---DWMVVEA 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     +   IAV+T + P HL  +   +   +A     + +   G   L  
Sbjct: 165 DESDGTFVK-----LPACIAVVTNMDPEHLDFYGTFDNARAAFDSFVQNIPFYGFAALCI 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------- 280
           D    + +  +   +  + I ++G S  AD +    +   + +  +V +  +        
Sbjct: 220 DHPEVQAMIPR---VSDRRIVTYGFSPQADIRAVNVELGPDGAKYDVLIYDRHTGESRAI 276

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G H  QN L    + + +         +++ F   +   +R+         T
Sbjct: 277 AGVRLPMYGPHNVQNSLACFAVGNEMGLPDVVMRDSMAKFQGVK---RRFTKTGEANGIT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLA 393
           +ID+ Y  +P  + A   VL      G GR IAV+       +  L + F       D  
Sbjct: 334 VIDD-YGHHPVEIAA---VLKAARTAGTGRTIAVVQPHRYSRLANLFEEFCTCFNDADAV 389

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKS 451
            V  +Y      + G    +L + L    H H         L   ++     GD VV   
Sbjct: 390 IVADVYAAGEAPIEGVSRDSLVEGLRMHGHRHVVALQNQQELAQVVREMARPGDFVVCLG 449

Query: 452 SNSC 455
           + + 
Sbjct: 450 AGNI 453


>gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
 gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
          Length = 465

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 140/385 (36%), Gaps = 38/385 (9%)

Query: 87  GVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSY 143
            V   L  L++     A +R    I+AI G+ GKTTT  +    L +I    ++A   + 
Sbjct: 91  AVRRGLRILHRSEGLEATMRGHEKIVAIAGTHGKTTTTSLTAHMLKTIGTRPSFAVGANI 150

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +             ++  G + +  +   +  FL +  RP + ++T +   HL ++   
Sbjct: 151 PS--------LGTNAELGSGSYFVAEADESDASFLNY--RPDVIIVTNVEADHLDHYGTA 200

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRK 262
           + +  A  +  + L + G +    DD     L  K   A     + ++G S +AD +L +
Sbjct: 201 DAVHQAFVDFAQLLPEDGLLICCADDEGANNLARKMRAARSDIRVQTYGFSDHADRRLSQ 260

Query: 263 WKQCSEQSWMEVQLQGKSMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            +   +       ++  S E         G H   N    L +      +V  A+ ALS 
Sbjct: 261 AQATEDG-RFTATIEWGSGESRILDLAVPGQHNLLNAAAALAVGIDAGLEVQEALDALSS 319

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G  +R+      G   + D+ Y  +P  ++AA++    ++ +  GR   V     
Sbjct: 320 FS---GAARRFEFKGEAGAVRVYDD-YAHHPTEVQAALTAGRTVAGN--GRLHVVF--QP 371

Query: 380 EMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            +   +Q F+   A+         VL +Y      + G +   +   +     V      
Sbjct: 372 HLFSRTQEFYRQFAQALSLADSVAVLDIYPAREEPIEGVNSELIASRIEVPAQVLAPAAA 431

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
               +        GD+++   +   
Sbjct: 432 VAHVVEKAE---PGDIIMTIGAGDV 453


>gi|296116438|ref|ZP_06835052.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977031|gb|EFG83795.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 483

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 148/428 (34%), Gaps = 58/428 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   GA  VVV       +   V +  +  IPV    ++L  L +L       
Sbjct: 59  GHD----AANLGAAQVVVTSTAVQRDNPEVLAARARLIPVVRRAEMLAELMRLR------ 108

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  ++   L + K     I   N  I             D+ + 
Sbjct: 109 ---WSVAVGGTHGKTTTTSLVAAVLEAAKLDPTVI---NGGIIEAYGTNTRMGSGDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   I V+T + P HL ++   E + +A  +    +   G   L
Sbjct: 163 EADESDGSFLR-----LPSVITVVTNMDPEHLDHWGTEEAMQAAYDQFVSNIPFYGFAVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + +  +   L    I ++G S  AD +  K       +  EV +  ++     
Sbjct: 218 CIDHPAVQQMIPR---LSDHRIVTYGFSPQADIRAEKVITDKLGATFEVVVTSRNRNRSR 274

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G+H  QN L  + +   +  D  T   A + F   +   +R+      G 
Sbjct: 275 RAGPFRLPMLGHHNVQNALAAIAVGVEMEIDDATIRSAFAAFKGVK---RRFTRTGETGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  + A +    Q         + PH   R  ++  + C     + +  
Sbjct: 332 ITVIDD-YGHHPVEIAAVLKAARQAGANNVIAVMQPHRYSRLQSLFNEFCTCMNDAGT-- 388

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVV 447
                +  +Y      + G    AL + L    H         + L   I +    GD V
Sbjct: 389 ---VIIADVYAAGEQPIEGMDRDALVEGLRERGHRSVVPLPGPEHLAEMINAIARPGDFV 445

Query: 448 VVKSSNSC 455
           V   + S 
Sbjct: 446 VCLGAGSI 453


>gi|205356765|ref|ZP_03223524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345332|gb|EDZ31976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 475

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 132/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   +   
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +      D +L       E    ++ 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEEDKLINLY------DDKLSLIHSSLEGLEFKID 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYKLCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +      GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 524

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/489 (18%), Positives = 162/489 (33%), Gaps = 63/489 (12%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PL T      A       +     V G ++ ++ + P + F A+ G    G DF   AV 
Sbjct: 27  PLTTLVARADARLVADPAVAESVRVTGATLRAQHVLPGDLFAALPGARAHGADFTADAVA 86

Query: 63  KGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVG 118
            GA  V+ + +     ++    +PV    D  G L      +        +++ ITG+ G
Sbjct: 87  GGAVAVLTDEEGASRPAVRESGLPVLIHPDPRGVLGSVAAWIYGEPSLTLSVLGITGTSG 146

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDF 162
           KTTT   +   L +       IG+    I                L  +  D     V  
Sbjct: 147 KTTTSYFVESGLRAAGYHTGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVERGVTH 206

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    L   R   +  R  +   T ++  HL     +E+  SAK+ +F+G      
Sbjct: 207 VAMEVSSHALALGR--VNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDGRSTHEI 264

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQ-SWMEVQLQ-G 278
           + +  D ++ +       AL      +     ++D  ++               +    G
Sbjct: 265 VVV--DSAWGQ-------ALVTPRTVTVSTEPDSDAGWRATDITLTPGGEQSFTLHAPDG 315

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +  + V    G     N ++   I+  +  D+D  ++        E  G+  R  L Q F
Sbjct: 316 RKAQAVLPLPGEFNVANAVLAAAILDTVGVDLDAVLEG---LATVEVPGRMERVYLGQPF 372

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D  Y   PA++  A+  L       EGR I V+G     G+   +    + E  + 
Sbjct: 373 TAVVD--YAHKPAAVTQALRALRA---RTEGRLITVIGS---GGDRDTAKRPMMGE-AAA 423

Query: 399 YNISHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDG 444
                V ++          A+++A+              V                   G
Sbjct: 424 RGSDLVIVTDDNPRSEDPAAIREAILAGARAVGPAEGCEVLEIGDRREAIAAAVERAEAG 483

Query: 445 DVVVV--KS 451
           DVV V  K 
Sbjct: 484 DVVFVAGKG 492


>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
 gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 128/399 (32%), Gaps = 35/399 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GI+ DSR +   + F  I G   DGHDF L AV    G V +  +       + +
Sbjct: 1   DVEVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALDAVAA--GAVAIVCERPIDGLGVDV 58

Query: 84  PVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V            A      +  T + +TG+ GKTT   M+   L +       IG
Sbjct: 59  PQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRCGVIG 118

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGM------------SHLGEIRFLTHLVRPHIAVI 189
           +    +         P  +       GM            S     +         +AV 
Sbjct: 119 TTGYSLDDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDFDVAVF 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           T +   H           +A AE+F  L   +     +N D                   
Sbjct: 179 TNLRGDHHE--GDAASCRNATAELFRRLTDPERQRAVINLD----VSTAEDGEKPFDDAA 232

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y    +  AD  + +      ++ + ++    + + +   +G     N+   +     L 
Sbjct: 233 YFSEAASAADVFVERADLSLFETAVTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGIALE 292

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D   + +    P  G   R         F+++ + Y   P ++K AI  + +   + 
Sbjct: 293 IPLDVIAEGVEAMEPAPG---RMELVDEGQPFSVVVD-YAQTPEALKRAIESVRKTGANN 348

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
               I V G     G+   S   ++  V   Y+   V++
Sbjct: 349 ---VITVFGC---GGDRDASKRAEMGRVADEYS-DIVFV 380


>gi|189220191|ref|YP_001940831.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
 gi|189187049|gb|ACD84234.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
          Length = 483

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 142/419 (33%), Gaps = 42/419 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG VVV  +++         V     +  +L ++     L+ K  I+ ++G+ GKTTT  
Sbjct: 74  AGTVVVVGNVIKRGNPELEAVLEKKYLFLSLPEVLKFFFLQGKQNIV-VSGTHGKTTTSS 132

Query: 125 MLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +L     S+       IG    +        R     D+ I E            +  + 
Sbjct: 133 LLAWIFESASLNPSFLIGGLPKNFTSGCRYTRG----DYWILEGDEYDTAYFDKRSKFLH 188

Query: 184 --PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P   +I  I   H   F+ + EI  A   + + + + G + +  DD     L   S A
Sbjct: 189 YLPQTVIINNIEYDHADIFANLGEILLAFKRLIQLIPRNGHLIIPEDDPNIVELAKSSLA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +Y+ G  K A+F++         S   +  +    E      G +  +N  M L 
Sbjct: 249 ----PVYTVGFGKEAEFRITDVLYDQRGSRFRMLGE----EFFLPVPGEYNVRNAAMCLA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +     +   +  + F   +   +R           ++D+ +  +P ++   I  + 
Sbjct: 301 AAKLYGIKPEQISQGFASFLGVK---RRLEVLGEACGIQVLDD-FGHHPTAIYKTIQAVR 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLA-- 413
           Q  P    R  AV          +  F  +L + L+      V +S      G       
Sbjct: 357 QRYPS--RRLWAVFEPRSNTTRRAV-FQQELPQALA--GADGVVISEVANKDGLSPSERL 411

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS-NSCGFYRLINLL 464
                 ++   + I   +  +   +   +   L  GD+VV     S +    YRL+ +L
Sbjct: 412 KPEQIAQELGKKGIPSFFCASPQEILQKLLEVLRAGDIVVFFSNGSFHGIP-YRLVEIL 469


>gi|189501426|ref|YP_001960896.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           BS1]
 gi|226711862|sp|B3EQB7|MURC_CHLPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189496867|gb|ACE05415.1| UDP-N-acetylmuramate/alanine ligase [Chlorobium phaeobacteroides
           BS1]
          Length = 465

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 155/425 (36%), Gaps = 54/425 (12%)

Query: 53  GHDFILHAVQKGAGLVVVN--------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GH     A   GA  VVV          + VA+     IPV   D++LG L +       
Sbjct: 57  GH----SAENIGACDVVVYSSAVAASENEEVAAALQKGIPVIKRDEMLGELMRYKSG--- 109

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 I + G+ GKTTT  M+   L    +           I   L  + M     + +
Sbjct: 110 ------ICVAGTHGKTTTTAMIATMLIGAGE---SPTVMIGGISDDLKGSTMVGSGKYMV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E       E       + P +AVI ++   H   ++ IE +  A       +   G +F
Sbjct: 161 IEA-----DEYDRAFLKLTPSLAVINSLEMEHTDTYADIEALRDAFVAFANKVPFYGRVF 215

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D      +  + +    + ++++G  ++AD   R  +    ++   V  Q + M  V
Sbjct: 216 CCVDWPEVRKIIPRMN----RRLFTYGIEESADLMARDIQIVGHETRFTVDYQKQEMARV 271

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +   VD+ +  L+ F    G  +R++    +    +I 
Sbjct: 272 SIAAPGRHNVHNALAAIATGLEMGLPVDSIVSGLASFS---GMRRRFQILYGRAGGPVIV 328

Query: 344 ESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDL 392
           + Y  +P+ +KAA+           V++   PH   R  A   D  E G  LS +  + +
Sbjct: 329 DDYAHHPSEVKAAVKAARAGWPEHEVIAVFQPHLFSRTTA-FAD--EYGWALSNADRVCV 385

Query: 393 AEVLSLYN--ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           A+V +       +  +SG  V      +  +  V +    + L   +Q   V G++++  
Sbjct: 386 ADVFAAREKTADYPGVSGELVAEAA-LMAGAQQVSFIPDREELCTTLQGYCVPGNLLLCM 444

Query: 451 SSNSC 455
            +   
Sbjct: 445 GAGDI 449


>gi|308063475|gb|ADO05362.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Sat464]
          Length = 493

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 136/345 (39%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    D  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSDIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SAE-------KIKPYAPKDSLLIDYSS------LVKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   EGR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNIES---NETLAQKIDEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   + +  L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKV-QLENILQATTIQGDLILF 485


>gi|304380665|ref|ZP_07363336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340772|gb|EFM06701.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
          Length = 444

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 60  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 159 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 214

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 215 HLRKIEADV------PIYYYGFKDSDDIYAQNIQIMDKGTAFDVYVDGEFYDHFLSPQYG 268

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 269 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 323

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 324 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 376

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 377 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 434

Query: 465 LEEF 468
           L++ 
Sbjct: 435 LDKL 438


>gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
 gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 154/407 (37%), Gaps = 54/407 (13%)

Query: 69  VVNTDMVASIGSLSIP--VFGVDDVLGA---LNKLAVAARLRSKATIIAITGSVGKTTTK 123
           + + D    + S  IP     V  +      ++ + ++ RL  +A IIA TG+ GKT+T 
Sbjct: 53  ICDYDFEFVVKSPGIPPRDEVVKKLREKYEIISDIELSFRLFPEAKIIATTGTNGKTSTT 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMSHLGEIRFLTHL 181
            M++  L+   +    +G+    I     L +M  +    IF  EL    L +       
Sbjct: 113 SMISHILNESGRKAISVGNIGEGI-----LWQMYEN-PSAIFSCELSSFQLHD----VST 162

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +PHIA IT I   H+      ++  ++K  I    +    + +N++D      KA   A
Sbjct: 163 YKPHIACITNITEDHIDWHGSFDDYINSKLNICRKQDSGDFLVINHEDPILVDHKADFRA 222

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNML 297
                +Y F   +  D          + S +  + QGK+++++       IG H  +N++
Sbjct: 223 ----KVYEFSSKEEVDRGA-----YLKGSSIFFKDQGKNIKLMDVDDLSIIGRHNYENLM 273

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    I    ++  I+    F   E    R     +     + ++S   N  S   AI
Sbjct: 274 AAILACFIYGVSIEDIIRGSKSFKSIE---HRLEFVTDIRGIRVYNDSKGTNVDSSVKAI 330

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFHIDLAEVLSLYNISHVWLSGFHVLALK 415
               +         + + G   +  + S          +++         + G     L 
Sbjct: 331 QSFDK-------PIVIIAGGYDKNIDYSPYIKEFKKHGKLM--------VIIGQTTDKLA 375

Query: 416 DALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
            +L  +  V+Y  ++ M+        +L +GD+ ++  +S S G YR
Sbjct: 376 -SLCEAYKVNYKKAKDMEDAVKISFDNLEEGDIFLLSPASASWGMYR 421


>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
 gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
          Length = 445

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 122/346 (35%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +   C +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGCLKQGDEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKDKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYTQAEAGDIVLL 418


>gi|118602740|ref|YP_903955.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166224725|sp|A1AX27|MURC_RUTMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118567679|gb|ABL02484.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 469

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 150/409 (36%), Gaps = 43/409 (10%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SS 132
           V     L+IPV    ++L  L +             IAI G+ GKTTT  ++T  L  + 
Sbjct: 88  VIKAHQLNIPVVPRAEMLAELMRFRFG---------IAIAGTHGKTTTTSIITHILNVAE 138

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  TY  IG   N  G+   L     + D+ I E   S    +      ++P ++VIT I
Sbjct: 139 LDPTY-IIGGILNSSGINAKLG----ESDYLIAEADESDASFLH-----LQPMLSVITNI 188

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    + +  A  +    L   G   +  DD     +    H    + + ++G
Sbjct: 189 DYDHMVTYDNDYQNLKDAFIKFSANLPFYGACIMCADDEGVNEILNSIH----RPLITYG 244

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +   D Q    KQ   Q + +V      K + +  + IG H   N L  +GI   L   
Sbjct: 245 FNNGTDIQAVNVKQVGMQMYFDVIYDKYTKQIPIKLNLIGKHNILNTLAAIGICCELNIK 304

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   KAL+ F     R   +           + + Y  +P  + A    L       + 
Sbjct: 305 TNIIQKALANFSGVARRLDHHGKLNINNAQVSLFDDYAHHPKEISAVFESLKNT---YQD 361

Query: 370 RRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +R+ V+            F          D+  +L++Y      ++  +   L +A+ RS
Sbjct: 362 KRLVVIFQPHRYSRTRDLFDDFVYTLSSADILILLNIYPAQEKPIAHINSSTLANAIRRS 421

Query: 422 IHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             ++    +    +   + S + + D++++  +       L +LL   +
Sbjct: 422 SGLNPMVIKNPKEILTVLPSIVNNNDILLILGAGDIHI--LPDLLKSNY 468


>gi|317012551|gb|ADU83159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori Lithuania75]
          Length = 493

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 134/349 (38%), Gaps = 36/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+ V+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKR------- 279

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQ--LRKWKQCSEQSWMEVQLQGKSM 281
                       K+    ++ I  +    +   D    ++  +   + +  E+ L     
Sbjct: 280 ----------LEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQSTLKGTSFEMLLDSVWE 329

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   A N+   + I   L  + +   + +   +P   R +            +
Sbjct: 330 SFETKVLGEFSAYNIASAILIAKHLGLETERIRRLVLELNPIAHRLQLLEV----NQKII 385

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N N   M   I    +++   EGR++ V   + E    S   +  LA+ +     
Sbjct: 386 IDDSFNGNLKGMLEGI----RLASLYEGRKVIVTPGLVESNTES---NEALAQKIDGV-F 437

Query: 402 SHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 438 DVAIITGELNSKTIASKLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|189485641|ref|YP_001956582.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|229620440|sp|B1GYM8|MURC_UNCTG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170287600|dbj|BAG14121.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 450

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 132/400 (33%), Gaps = 44/400 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N   V +     IP+    ++L  L +L  A  +               TTT  + 
Sbjct: 73  AISRNNPEVVAALKKRIPIIARIEMLVELARLKYAVTITGTHGK---------TTTTSLT 123

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++ L +        IG    ++     L R     D+ + E   S    +R     + P 
Sbjct: 124 SLVLHNGGLDPTIVIGGRLKNLKTNAKLGRG----DYIVVEADESDGSFLR-----LSPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   HL  +  +E +  A  +    +   GT  +  D+     +  +      +
Sbjct: 175 ITVVTNIDNDHLDYYDSMENLKEAFVKHINCIPFYGTAIICSDNEVVRKIIPQI----TR 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G   N D +    K     +  +V    K +  V    +G H   N L  +G+  
Sbjct: 231 RYITYGLMGNPDIKASNIKVLKNHTSFDVFYMRKKVGSVCMKILGKHNVSNSLAAIGVGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L     +    ++ F   +G  +R      +    +ID+ Y  +P  + A +  +    
Sbjct: 291 RLGISFSSIADTINKF---DGVSRRLEIKGEKNGMMVIDD-YGHHPTEVAATLRAIKLFW 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWLSGFHVLALKD 416
           P    RR+ VL          Q F+         D  +VL +Y+     +       + +
Sbjct: 347 PE---RRLVVLFQPHRYTRTKQLFNEFGRSFSDADFVKVLDIYSAGEQPIDEVTSDLILE 403

Query: 417 AL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +L            ++         L  GDVV+   +   
Sbjct: 404 SLVSNKCKAEKFSDLEEF----SKGLSVGDVVLTLGAGDV 439


>gi|16800714|ref|NP_470982.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria innocua Clip11262]
 gi|24212046|sp|Q92BA4|MURC_LISIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16414133|emb|CAC96877.1| murC [Listeria innocua Clip11262]
 gi|313623565|gb|EFR93744.1| UDP-N-acetylmuramate--alanine ligase [Listeria innocua FSL J1-023]
          Length = 447

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 142/413 (34%), Gaps = 64/413 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  + +     L++PV      LG L             T IAITGS GKT+T  +
Sbjct: 68  NAFPDTHEEIERANELNLPVIRYHKFLGQLID---------GYTSIAITGSHGKTSTTGL 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  + +I+ T   IG                 D  +   E        + +     +P 
Sbjct: 119 LSHVVGAIRPTSYLIGDG---------TGSGTKDAKYFALEACEYQRHFLAY-----KPT 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   F  ++++ +A   + + ++K        DD     L          
Sbjct: 165 YAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL--GDDVELRKLSLDV------ 216

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I  FG     +FQ +  K+ +  +  +V  + + +        G H   N L  + +  
Sbjct: 217 PIIYFGFGSENEFQAKNVKKETTGTKFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCD 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                VD   K L  F   +    R      +G   L+D+ Y  +P+ ++A ++   Q  
Sbjct: 277 YEGLPVDEVKKELKTFEGVK----RRFSITEKGNQVLVDD-YAHHPSEIRATVNAARQKY 331

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
           P+   + +AV          +++F    A+ L+L     V+L           G   +A 
Sbjct: 332 PNK--KIVAVF--QPHTFTRTRTFLQGFADSLNL--ADEVYLCDIFGSAREKTGNLTIAD 385

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLIN 462
                +  H+   E  + L  +         V++   +         + ++++
Sbjct: 386 LAHKTKGNHIIKEEHTEELLQY------PEAVILFMGAGDVQKFQAAYEKVLD 432


>gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1087]
          Length = 459

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +EE A+AK  I + +    
Sbjct: 172 TLVMELSSFQLIGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVMPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 382 KKMVILGQSAPRVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|223043543|ref|ZP_03613588.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14]
 gi|314933892|ref|ZP_07841257.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87]
 gi|222443031|gb|EEE49131.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14]
 gi|313654042|gb|EFS17799.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87]
          Length = 437

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 137/385 (35%), Gaps = 46/385 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +        + ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG          
Sbjct: 85  LDVIKYHDFLGHVINQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG-------- 136

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D+  FE       E R       P  A++T I   H   F  IE++  A  
Sbjct: 137 -TGMGLPGSDYFAFEA-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIEDVYDAFQ 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++   ++K   I    DD +   L+A         IY +G  +  D   +  +   + + 
Sbjct: 191 DMAHNVKK--AIIAWGDDDYLRKLEADV------PIYYYGFKETDDIYAKNIQITEKGTQ 242

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V   G+  +       G H   N L  + I  +   +VD    AL  F   + R    
Sbjct: 243 FDVYTNGEFYDQFLSPQFGDHNILNALSVIAISYLEKMNVDNIKDALVTFGGVKRRFNET 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + +       ++ + Y  +P  + A I    +  P  E   +AV          +Q+F  
Sbjct: 303 KVSNQ-----VLVDDYAHHPREISATIESARKKYPQKE--VVAVF--QPHTFSRTQAFLD 353

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG-------LFLFIQSSLVD 443
           + A  LS      V+L      ++++           E +DG           ++    D
Sbjct: 354 EFASSLSK--ADRVFLC-EIFGSIRENTGELTIQDLIERIDGSSLIDENSIDILKE--FD 408

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
             V++   +      +L+   LE+ 
Sbjct: 409 NAVILFMGAGDIQ--KLLKAYLEKL 431


>gi|82751329|ref|YP_417070.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           RF122]
 gi|82656860|emb|CAI81289.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus RF122]
          Length = 412

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 148/409 (36%), Gaps = 51/409 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                + + +     L + V   +D LG +           + T +A+TG+ GKT+T  +
Sbjct: 43  NAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTSVAVTGAHGKTSTTGL 93

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  ++  KKT   IG                 + D+  FE       E R      +P 
Sbjct: 94  LSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA-----CEYRRHFLSYKPD 139

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T I   H   F  I ++  A  E+   ++K   I    DD     ++A        
Sbjct: 140 YAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDEHLCKIEADV------ 191

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            IY +G   + D   +  +   + +  +V + G+  +       G H   N L  + I  
Sbjct: 192 PIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISY 251

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   DV    +AL  F   + R      A       +I + Y  +P  + A I    +  
Sbjct: 252 LEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHHPREISATIETARKKY 306

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           PH E   +AV          +Q+F  + AE LS      V+L      ++++        
Sbjct: 307 PHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-EIFGSIRENTGALTIQ 359

Query: 425 HYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLLLEEF 468
              + ++G  L  + S+      D  VV+   +      +L N  L++ 
Sbjct: 360 DLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQ--KLQNAYLDKL 406


>gi|325690202|gb|EGD32206.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK115]
          Length = 459

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 127/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+  AL++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQNGLLSGNIGYP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL     +E  A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          E   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD------GAYLEGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L  + +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNVENALAMIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGRVNEVAF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        S    GD+V++
Sbjct: 382 KKMVILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 451

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AITG+ GKTTT  +L   L  + K +   +G    +    + +       D  + E   
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFIVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 RYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D    F++    +  V++++ +       L
Sbjct: 391 ADEQIIKGAESQDIVKGLSGYL---LADGFDHAIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEILSE 451


>gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
 gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
          Length = 508

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR I  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDITAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|221141545|ref|ZP_03566038.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|269941218|emb|CBI49606.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|302751566|gb|ADL65743.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329314414|gb|AEB88827.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 437

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 153/424 (36%), Gaps = 51/424 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         + + +     L + V   +D LG +           + T 
Sbjct: 53  FDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIID---------QYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R      +P  A++T I   H   F  I ++  A  E+   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               ++A         IY +G   + D   +  +   + +  +V + G+  +       G
Sbjct: 208 HLRKIEADV------PIYYYGFKDSDDIYAQNIQIMDKGTAFDVYVDGEFYDHFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   DV    +AL  F   + R      A       +I + Y  +
Sbjct: 262 DHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ-----VIVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  PH E   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPHKE--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADRVFLC-E 369

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLL 464
              ++++           + ++G  L  + S+      D  V++   +      +L N  
Sbjct: 370 IFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILFMGAGDIQ--KLQNAY 427

Query: 465 LEEF 468
           L++ 
Sbjct: 428 LDKL 431


>gi|254387287|ref|ZP_05002546.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
 gi|194346091|gb|EDX27057.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
          Length = 465

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/437 (18%), Positives = 145/437 (33%), Gaps = 39/437 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGV 88
           D+R     +A  A     + GH     A      +V                L IPV   
Sbjct: 41  DARDSETAQALRAHGATVHIGHAAAHLAADSTCVVVSSAIRSDNPELARAAELGIPVVHR 100

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L  L               IA+ G+ GKTTT  ML ++LS++          +    
Sbjct: 101 SDALAGLMD---------GLRPIAVAGTHGKTTTTSMLAVSLSALG--------LDPSYA 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +   L     +   G  ++ ++   E     H   P +A+I      H +N++ +EEI  
Sbjct: 144 IGGDLDAPGSNAHHGEGDIFVAEADESDRSFHKYTPQVAIILNAELDHHANYASMEEIYE 203

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           +       +   GT+ + +  +    + A+        + ++G+ + AD ++ K      
Sbjct: 204 SFETFVAKVVPGGTLVVAHGQAGAAEIAARVAGNEGLRVVTYGEEEAADVRITKITPRGL 263

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S + V + G+ +       G H A N +  L     L         AL  +   +   +
Sbjct: 264 TSEVTVVIDGRMLTFTVSVPGRHYAHNAVAALAAGVALGIPAHNLASALGKYTGVK---R 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R +         +I +SY  +P  M A +  +   +      RI V+     +   +Q  
Sbjct: 321 RLQLKGEAAGVQVI-DSYAHHPTEMSADLEAIRGAAGDS---RILVVFQ-PHLFSRTQEL 375

Query: 389 HIDLAE---------VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQ 438
             ++ +         VL +Y      + G      +  A      V      D +   I 
Sbjct: 376 GKEMGQALALADAALVLDIYPAREDPIPGITSEIIIASARAAGADVTAEHEKDAVADVIA 435

Query: 439 SSLVDGDVVVVKSSNSC 455
                GD+V+   +   
Sbjct: 436 GMAKPGDLVLTMGAGDV 452


>gi|323464173|gb|ADX76326.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 437

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 161/440 (36%), Gaps = 55/440 (12%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           ++G   D + F   A++     ++         G   I      D    + +        
Sbjct: 28  VQGSDIDQYVFTEIALKNKGIQILPFDADNIKEGLTIIQGNAFKDTHEEIARAHELGLKV 87

Query: 106 SKAT-----------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
            +              +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +  
Sbjct: 88  IRYHDFLSEVINEYVSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPQS-- 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                      E       E R       P  A+IT I   H   F  ++++ +A   + 
Sbjct: 145 -----------EYFAFEACEYRRHFLSYSPDYAIITNIDFDHPDYFKDVDDVINAFQGMA 193

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + ++K   I    DD + + ++          +Y +G   + D   +  +     +  +V
Sbjct: 194 KNVKK--AIIAWGDDPYVKNIEVDI------PVYYYGFDTSMDVYAQNIEVTGSGTEFDV 245

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++G+     V    G H   N L  L I  +   ++D   +AL  F   +   +R+   
Sbjct: 246 YVKGEFYGHFVSPQYGDHNILNALAVLTISYLENLNLDNIKEALITFGGVK---RRFNET 302

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q    ++ + Y  +P  + A I    +  P+ E   +A+          +++F  + A
Sbjct: 303 FAQN--QVLVDDYAHHPREISATIETARKKYPNKE--VVAIF--QPHTFSRTKAFLQEFA 356

Query: 394 EVLSLYNISHVW-LSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +VL+L + +++  + G        L++ D L      H  +  +     +Q    D  V+
Sbjct: 357 DVLNLADQTYLCDIFGSIRENQGELSINDLLKLVDGAHLID--ENSVEQLQKH--DNAVL 412

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +   +      +++   +E+
Sbjct: 413 LFMGAGDIQ--KILKAYMEK 430


>gi|269118800|ref|YP_003306977.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
 gi|268612678|gb|ACZ07046.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
          Length = 448

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 146/395 (36%), Gaps = 43/395 (10%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V++ +  + +  + A L + +  IA+ G+ GKTTT  ML I           +   + 
Sbjct: 85  YAVNNNIKKIKRGELLALLMNDSKGIAVAGTHGKTTTSSMLGI----------TMLEKDP 134

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            I V   +  +  +   G  E  ++   E       + P  +++T +   HL N    E 
Sbjct: 135 CIVVGGIIPEIGSNSKVGNSEYFIAEADESDNSFLYLTPSYSIVTNVEADHLENHGSYEN 194

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWK 264
           I  +  E  +  + +  + LN D    + L      L  K I  +    ++AD      +
Sbjct: 195 IKKSFEEFID--KTSDIVVLNKDCHEIKKL-----NLKNKNIIWYSINDESADIYAANIE 247

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             + +S  EV   G+S+ +      G H   N L  + +      D+D   + L  F   
Sbjct: 248 YKNRESHYEVVKNGESLGKFRLSIPGEHNISNSLGVIYLAHEFLCDMDKVKEYLYNF--- 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAV 374
            G  +RY+   ++    +  + Y  +P  + A I+   +           PH   R    
Sbjct: 305 RGANRRYQILYDKSIKII--DDYAHHPTEITATINAAKKIETGKITVVFQPHRYSRTNFF 362

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           L +  E  +L+   +     +L +Y+     +       L + +  +  V+   + + + 
Sbjct: 363 LNEFAESLKLADEVY-----LLPIYSAEEENIYNISSEKLAELIGGNTRVY---SEEEIS 414

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             + +     +V +   + S    R+ N +  + P
Sbjct: 415 DRVLNDNSSENVYLFMGAGSI--SRIANTIKNKLP 447


>gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4244]
          Length = 516

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
 gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
          Length = 508

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|293366318|ref|ZP_06612998.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319556|gb|EFE59922.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 437

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 133/374 (35%), Gaps = 54/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                 + D+  FE
Sbjct: 100 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPESDYFAFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++  A   +   ++K   I   
Sbjct: 151 A-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  +    
Sbjct: 204 GDDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQFLS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I  +   +V+   +AL  F   + R    + +       +I + 
Sbjct: 258 PQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ-----VIVDD 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P  +   +AV          +Q+F  + AE LS      V+
Sbjct: 313 YAHHPREISATIETARKKYPQKD--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADQVF 366

Query: 406 LSGFHVLALKDALPRSIHVHYSETM-----------DGLFLFIQSSLVDGDVVVVKSSNS 454
           L       +  ++  +      E +           +     ++    D  V++   +  
Sbjct: 367 LC-----EIFGSIRENTGDLTIEDLINRIDGSTLIDENSIDVLEK--FDNAVILFMGAGD 419

Query: 455 CGFYRLINLLLEEF 468
               +L+    E+ 
Sbjct: 420 IQ--KLLKAYFEKL 431


>gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 451

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 137/366 (37%), Gaps = 30/366 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +AITG+ GKTTT  +L   L  + K +   +G    +    + +       D  + E   
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFIVGGVVKYADSNIQVN----GTDKLVIEADE 161

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P + +IT I   H++ ++   +        F   E   +I+L  DD
Sbjct: 162 SDASFL-----FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L AK +    K + S+G S NAD Q+  +    E +  +++ +G  +       G
Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  QN    +     L    +    AL        R   Y   ++    T+ID+ Y  +
Sbjct: 276 RYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDD-YGHH 334

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID------LAE---VLSLYN 400
           P  +  +IS +    P+   + I V          ++    D      LA+   +L  Y+
Sbjct: 335 PVEVANSISAVRDRYPNK--KIIHVF--QPHRYTRNRDLIKDWPKALSLADQLILLPTYS 390

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                + G     +   L   +    ++  D +  F++    +  V++++ +       L
Sbjct: 391 ADEQIIKGAESQDIVKGLSGYL---LADGFDHVIYFLEKLANENTVILIQGAGDV--TNL 445

Query: 461 INLLLE 466
           + +L E
Sbjct: 446 VEILSE 451


>gi|15675424|ref|NP_269598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes M1 GAS]
 gi|71911066|ref|YP_282616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS5005]
 gi|81174547|sp|P0C0D8|MURD_STRP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13622612|gb|AAK34319.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71853848|gb|AAZ51871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS5005]
          Length = 452

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 106 AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 163 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN +      L   + A    T+  F   K  D   L+      ++  +        
Sbjct: 219 YLILNANQEISATLAKTTKA----TVIPFSTQKVVDGAYLKDGILYFKEQAIIAATD--- 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +     D   + LS F   + R +R          T
Sbjct: 272 ----LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDIT 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           R I + G   + G        DL        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 372 LKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|295111742|emb|CBL28492.1| UDP-N-acetylmuramate--alanine ligase [Synergistetes bacterium SGP1]
          Length = 497

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 139/371 (37%), Gaps = 41/371 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  ML++ LS               + V   +  M  +   G   L ++
Sbjct: 113 VGVAGTHGKTTTSSMLSLVLSRAG--------LAPTLYVGARMRDMGTNALLGEGRLFLA 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L E      L RP ++++T +   H+ +F   E++  A A    G ++   + +  +D 
Sbjct: 165 ELDESDGSFELFRPAVSIVTNVDWDHVDHFPSFEDVILAFARFASGRKEGAPLIVCAEDE 224

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGI 288
             + +           +  +G  ++ D+        +       V  +GK +  +     
Sbjct: 225 GAQRMLEGLRG----PLLRYGWGRSWDWGAFDLVPRATGGISCSVCRKGKVLGPLELSVS 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  L    +L    + A   L  FH   G  +R +     G  T+ID+ Y  
Sbjct: 281 GEHNVLNALAALAAADVLGVPFEKAAATLKDFH---GAARRLQTKGTLGGVTVIDD-YAH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISH--- 403
           +P  + A +S L  I P+   RRI +L         +      L E L  +L        
Sbjct: 337 HPTEIAATLSALRGIYPN---RRILLLYQPHRYTRTAA-----LVEPLTAALSGADEILL 388

Query: 404 --VWLSGF-----HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             ++ +G         A+ + L R    + +    D     +++   DGD+++   + + 
Sbjct: 389 LPIYSAGEPPQQVSAEAIVERLRRAGKRIAFCRDEDDALRAVRALSQDGDLLLTMGAGNV 448

Query: 456 GFYRLINLLLE 466
             +R+    L+
Sbjct: 449 --FRVGERFLD 457


>gi|168334047|ref|ZP_02692266.1| UDP-N-acetylmuramate--L-alanine ligase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 438

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 135/370 (36%), Gaps = 37/370 (10%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I I G+ GKTTT  ML   L  +       +G   + IG  + +     D  + + E   
Sbjct: 92  ICIAGTHGKTTTTSMLANILLHTNNNPTITVGGIVDSIGGNIHIG----DTKYFLTEACE 147

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            H   + F      P + VI  I   H+  F  +++I  +  E    + K G + +    
Sbjct: 148 YHNSFLDF-----NPMVGVILNIEEDHMDFFKDLDDIKHSFTEFASLIPKQGLLVI---- 198

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVV-HHG 287
               L    +       I +FG SK AD+  +     +      +V  + + +  +    
Sbjct: 199 EETALQNTPAIKNIAAPIETFGLSKTADWSAQNISFDANACPSFDVYYKNEFVFHIAIAL 258

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L   V              G  +R+          LID+ Y 
Sbjct: 259 AGTHNVLNTLSAIAVCRFLDIPVAEI---SKDLIHFSGAKRRFEMRGKIHDILLIDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHV 404
            +P+ +KA ++    ++ +       V          +++F     + LS Y    ++ +
Sbjct: 315 HHPSEIKATLNT---VAKYPHKNLYVVF--QPHTYSRTKTFLNGFVDALSTYGQIIVTDI 369

Query: 405 WLSGF------HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           + +        H   L   L  +  +  Y E+ D +  ++ ++   GD+++   + +   
Sbjct: 370 YAARETNPGDIHSRDLVKLLQNKGTNSIYIESFDEISDYLLTTTEPGDIIMTMGAGNVN- 428

Query: 458 YRLINLLLEE 467
            ++I+ LL +
Sbjct: 429 -QIIDTLLGK 437


>gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 434

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 140/453 (30%), Gaps = 90/453 (19%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR ++   AFF  +        ++  A +KG    V   ++ +             
Sbjct: 14  LSDDSREVSKDCAFFVTQSSK----KYLKEAQEKGCKFFVTPKELSS------------- 56

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                         L+     I ITG+ GKTTT  M+   L  +      +G+    I  
Sbjct: 57  -------------YLKLNLQCIGITGTNGKTTTAAMIYSILLDMGYKVGLLGTRGFFING 103

Query: 150 ----------PLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                     P TL              +F + E+    + + R     +   + ++T I
Sbjct: 104 IQKRPKGLTTPSTLEIYTAINEAKQEGCEFFVMEVSSHAITQNRI--EGLEFALKILTNI 161

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +E   + K   F          +N D         K+    ++   ++G 
Sbjct: 162 TSDHLDYHKTLENYIATKNSFFSN--PNDKKLINKD--------EKNAQYPLQNTLTYGI 211

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVD 311
              + F ++ +         ++    +   +    +G H   N L  +G V +LT   + 
Sbjct: 212 ESTSTFSIKAYSLKG-GITAQITYGSQVATLDSPLLGKHNLYNALAAIGAVQMLTQKPLQ 270

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                L  F    GR +            LI   +      M+               ++
Sbjct: 271 EIANQLENFGGVMGRMQII------NQKPLIVVDFAHTEDGMEQIFQSFLH-------QK 317

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSI 422
           IAVL      G+  ++    +    S Y    ++++  +         +  +   +P+S 
Sbjct: 318 IAVL--FGAGGDRDKTKRPKMGFCASKY-AQKIYITSDNPRNEDPKTIMQEILSGIPQSK 374

Query: 423 HVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
                  E          + L + +V++V  K 
Sbjct: 375 RSRVILEENRALAIQKAIAELKEDEVLLVLGKG 407


>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
 gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
          Length = 437

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 135/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A I  +   H+  +  +E+   AK  I+          LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYHN---AKVGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+     +     +G   R++ A        I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAIGINLDSI---RAALRHFKGLDHRFQLAHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +    S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGANFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|193213214|ref|YP_001999167.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
 gi|193086691|gb|ACF11967.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
          Length = 474

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 144/420 (34%), Gaps = 42/420 (10%)

Query: 54  HDFILHAVQ-KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
           +DF    ++     LVVV   +      L   +    D    L  +    R     + T 
Sbjct: 52  NDFSAENLKSASPDLVVVGNAISRGNPDLEYAL----DTHMELISMPELVRRELIGRHTS 107

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I + G+ GKTTT  +    L +        IG    + G     + +  +  F + E   
Sbjct: 108 IVVAGTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGL-SEPGFFVTEGDE 166

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  +  RP IA+I  +   H   F  +++I  +   +   +  +G + +N 
Sbjct: 167 YDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVNG 226

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
           DD     + AK+       + +FG +  AD+        +E +   V   G++M  V   
Sbjct: 227 DDPNSMEVAAKAFC----RVETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSVP 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L             ++  K L+ F   + R +        G  TLI++ +
Sbjct: 283 LFGNYNVMNALAATAAAIRAGVSFESITKGLAKFKRPKRRMEL--VGEYAGGVTLIED-F 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P +++     L  I+ H  GRRI    +          F  +L E     +   V +
Sbjct: 340 AHHPTAVRL---TLGAIAEHYPGRRIVACFEPRSNTTTRNIFQHELTECFDDAS---VVV 393

Query: 407 SG--------------FHVLALKDALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVVV 449
            G                     +   +   V  +   D    +  FI++    GDVVV+
Sbjct: 394 LGRVNRPDRYAPEKRLDAAQLCHELEAKGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVL 453


>gi|220930459|ref|YP_002507368.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulolyticum
           H10]
 gi|220000787|gb|ACL77388.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulolyticum
           H10]
          Length = 467

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 136/404 (33%), Gaps = 44/404 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +     L +PV    ++LG L K             IA+ G+ GKTTT  M
Sbjct: 80  VAVKEDNPEITRSKELGLPVIDRAELLGLLMKKHSFG--------IAVAGTHGKTTTTSM 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +         T     + +    +   L  +  +   G  E  ++   E         P 
Sbjct: 132 I--------TTIMLESNTDPTAHIGGELDCIGGNTRIGNSEFFITEACEYYGSFLKFHPF 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+  I   H+  F  +E I S   E    +   G I    DD     + +K       
Sbjct: 184 MAVVLNIELDHVDYFRDLEHIKSIFGEFLALVPNDGYIVACADDENTLSVVSKKEC---- 239

Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
            I ++G K+K+A +  +     S   +  +V  +G+ +  V     G H   N L  + +
Sbjct: 240 NIITYGLKNKDAMWTAKGITYNSMGCASFDVYKKGEKVGNVSLSVPGPHNVNNSLAAIAV 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  ++     LS F    G  KR+          +ID+ Y  +P+ ++A ++    
Sbjct: 300 AYTCGCSMENIAYGLSRFG---GSHKRFELKGLVDNIKVIDD-YAHHPSEVQATLNAAKS 355

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVL 412
                      PH   R  A L         S+SF   D   +  +Y          H  
Sbjct: 356 SNHNKIWCVFQPHTYTRTKAFL------DRFSKSFGEADNIIITDIYAAREKDPGDIHSS 409

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L D +     +  Y      +  ++   +  GD+++   +   
Sbjct: 410 MLADRIRENGGNAVYISDFQDIAEYLDKKVEPGDLILTMGAGDI 453


>gi|157151093|ref|YP_001449974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|189082919|sp|A8AW14|MURD_STRGC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157075887|gb|ABV10570.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 450

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 127/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQSACGKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL      EE A+AK  I + +    
Sbjct: 163 TLVMELSSFQLMGIE----AFHPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          +   +  + +    
Sbjct: 219 YLVLNFNQDWAKGMASQTQA----TVVPFSTTEKVD------GAYLDGDVLTFRGEAIIK 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 269 VAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 372

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD+V++
Sbjct: 373 KKMVILGQSAPRVKRAADQAGVSYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|71903854|ref|YP_280657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS6180]
 gi|209559688|ref|YP_002286160.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes NZ131]
 gi|122063268|sp|Q48SK8|MURD_STRPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226722949|sp|B5XMA3|MURD_STRPZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71802949|gb|AAX72302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS6180]
 gi|209540889|gb|ACI61465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes NZ131]
          Length = 452

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 106 AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 163 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN +      L   + A    T+  F   K  D   L+      ++  +        
Sbjct: 219 YLILNANQEISATLAKTTKA----TVIPFSTQKVVDGAYLKDGILYFKEQAIIAATD--- 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +     D   + LS F   + R +R          T
Sbjct: 272 ----LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDIT 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           R I + G   + G        DL        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 372 LKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|254832007|ref|ZP_05236662.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           10403S]
          Length = 447

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 149/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                 D  +  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKDAKYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD+    L           I  FG  +  +FQ +   + +  +  +V  + + +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSF 255

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+     L  F   +    R      +G   L+D
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVK----RRFSITEKGNQVLVD 311

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 312 D-YAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|21910712|ref|NP_664980.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS315]
 gi|28895598|ref|NP_801948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes SSI-1]
 gi|94990778|ref|YP_598878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10270]
 gi|47606755|sp|Q879A1|MURD_STRP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76363881|sp|P0C0D7|MURD_STRPY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595695|sp|Q1JG10|MURD_STRPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3090871|gb|AAC38404.1| uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase
           [Streptococcus pyogenes]
 gi|21904915|gb|AAM79783.1| putative uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate
           ligase [Streptococcus pyogenes MGAS315]
 gi|28810847|dbj|BAC63781.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptococcus pyogenes SSI-1]
 gi|94544286|gb|ABF34334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10270]
          Length = 452

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 106 AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 163 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN +      L   + A    T+  F   K  D   L+      ++  +        
Sbjct: 219 YLILNANQEISATLAKTTQA----TVIPFSTQKVVDGAYLKDGILYFKEQAIIAATD--- 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +     D   + LS F   + R +R          T
Sbjct: 272 ----LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDIT 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           R I + G   + G        DL        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 372 LKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|15645360|ref|NP_207534.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
 gi|2313862|gb|AAD07786.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
          Length = 493

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 134/345 (38%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+   + + +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+ V+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITCLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKRLEKAFCY 286

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + +       K K +A     +  +         ++  +   + +  E+ +         
Sbjct: 287 SVE-------KIKPYAPKDSPLIDYSS------LVKNIQSTLKGTSFEMLIGSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +            +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEV----NQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I    +++   +GR++ V   + E    S   +  LA+ +         
Sbjct: 390 FNGNLKGMLEGI----RLASLHKGRKVIVTPGLVESNTES---NEALAQKIDGV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L     +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKIL-LKDKAQLENILQATTIQGDLILF 485


>gi|220912340|ref|YP_002487649.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859218|gb|ACL39560.1| UDP-N-acetylmuramate/alanine ligase [Arthrobacter chlorophenolicus
           A6]
          Length = 464

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 126/385 (32%), Gaps = 40/385 (10%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP--VFGVDDVLGA---------LNKLAVAARLRSK 107
               KGA + V             +       D+   A         L++    A    +
Sbjct: 58  DLATKGARIAVAYDAGNLGDAQTVVAGSAIRADNPELAAARQAGLPVLHRSEALAATMGE 117

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++ I G+ GK+TT  M+T+ L       +        IG  +    +          +
Sbjct: 118 DTVVTIAGTHGKSTTTSMVTVLLQGAGLDPS------FAIGANVPSLGVNAAHGTSGIFV 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             +   +  FL +  RP IAV+T +   HL ++   E +  +       L   G +    
Sbjct: 172 AEADESDGSFLNY--RPQIAVVTNVEADHLDHYGTAEAVYESFDRFAALLPADGLLVACA 229

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L  ++   G   +  +G + +AD  L           + V       ++    
Sbjct: 230 DDPGARALAERTRNAGTTRVLLYGTAGDADLTLYD----DGPGSVAVSTADGRFDLALQV 285

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N      +   L      A  AL  F    G  +R+          + D+ Y 
Sbjct: 286 PGRHNALNAAAAFAVALELGVAPGAAASALGSFS---GASRRFELKGEARGVRVFDD-YA 341

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  ++AA++    ++      ++ VL     +   ++ F  + A+         VL +
Sbjct: 342 HHPTEVRAALTAARSVAGEH---KVHVLFQ-PHLFSRTREFAREFADALDLADTALVLDI 397

Query: 399 YNISHVWLSGFHVLALKDALPRSIH 423
           Y      + G     + D +    H
Sbjct: 398 YPAREDPIPGVTSKLIADHMAGRGH 422


>gi|315084589|gb|EFT56565.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA2]
          Length = 471

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 138/406 (33%), Gaps = 35/406 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGREGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLT 179
             M+   L       + +      IG PL    M   +  G   + E   S    +++ +
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V     V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QIV-----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            + G   + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESTGTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++  +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRVTLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFH 410
             ++   G+GR IA       +   ++ F  +    L          +Y      + G  
Sbjct: 354 ARRV-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + DA +       Y      L   +   +  GD+V+   +   
Sbjct: 411 GELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDV 456


>gi|67920791|ref|ZP_00514310.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
 gi|67856908|gb|EAM52148.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
          Length = 503

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 152/416 (36%), Gaps = 44/416 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N    A+      P+F   DVL AL +             IA+ G+ GKTTT  ++
Sbjct: 119 AIGHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTTTSSLI 169

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L         I             AR+     + + E   S     +       P+I
Sbjct: 170 GYMLLKAGVDPTIIVGGEVDAWEGN--ARIGARGGYLVAEADESDGSLTKH-----YPNI 222

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T I   H  ++  ++++     +IFE   +   +    D          +  L    
Sbjct: 223 GIVTNIELDHPDHYQTLDDVVKTF-QIFE--TQCDILIGCLDCETV------ATQLTPSI 273

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            YS   +K AD+ +++       +  +V  + K + E+     G H   N L  + +   
Sbjct: 274 TYSLDSNKGADYTVKQLLSDHNGTTAQVWEKDKYLGEMRLTIPGNHNVSNALAAIAVGRK 333

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QIS 364
           L  +      AL  F   EG  +R+    +    T ID+ Y  +P+ ++A +S    ++ 
Sbjct: 334 LGLEFSVIADALFTF---EGAKRRFEQRGHCNGVTFIDD-YAHHPSEIEATLSAARCKVD 389

Query: 365 PHGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +   R +A+             + E S  F + DL  +  +Y+   V         L  
Sbjct: 390 GNNISRVVAIF-QPHRYSRTATFLKEFSVCFNYADLVVLTDIYSAGEVNRHNISGQDLAI 448

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A+  + H  V Y  ++  L   + S L  GD+V+   +      ++I  ++ ++ A
Sbjct: 449 AVQDNHHAQVIYEPSLKALNEALTSLLQPGDLVLFLGAG--NLNQIIPQVISQYQA 502


>gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1342]
          Length = 516

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 161/464 (34%), Gaps = 55/464 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G   + V+         L I
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDG-LEIYVSEVPYEVPAQLGI 101

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142
            V  +  V+  L+ +A     ++K  +I  TG+ GKTT        L  + ++  A + +
Sbjct: 102 IVTDIKKVMAVLS-MAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALLST 160

Query: 143 YNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPH 185
            N+ +               L L RM        +   I E+        R   + +   
Sbjct: 161 MNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLFFD 218

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +    
Sbjct: 219 VGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQQK 275

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMT 299
           +  I  +G     +          +     V+      G +        G     N L  
Sbjct: 276 VPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNALSA 334

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                ++ A  +   + ++          R     N    T+  + Y  N  S+K  ++ 
Sbjct: 335 AIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLLTF 389

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +   H +GR I ++G     G+ + S   D   VLS      V  +          + 
Sbjct: 390 VRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKIC 444

Query: 420 RSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 445 QEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|15602005|ref|NP_245077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|30316119|sp|Q9CPB0|MURD_PASMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12720355|gb|AAK02224.1| MurD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 434

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 140/346 (40%), Gaps = 40/346 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +K  IIAITGS GK+T   ++   +++        G+          L+ +    D  
Sbjct: 102 REAKKPIIAITGSNGKSTVTSLVAHMVNAAGLKVGMGGNIGIP-----ALSLLEQAHDMY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  I+  H++ +  +E+   AK +I+   +   T 
Sbjct: 157 VLELSSFQL----ETTYSLKATSATVLNISEDHMNRYVDLEDYRQAKLKIYHHAQ---TA 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D       A +   G+K   SFG+  NAD+ L+  K    +S++  + +      
Sbjct: 210 VINAED-------ALTAMDGLKNGVSFGED-NADYWLKTEK---GRSYLMAKDERVLACD 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +       +++  +AL  F    G   R++ A        ++
Sbjct: 259 EMKLVGRHNYMNALAAIALAQAAGIPLESIRRALREF---NGLDHRFQLAHFAHGVRWVN 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L        G    +LG   +  + S     +LA +++  NI  
Sbjct: 316 DSKATNVGSTVAALTGL-----QLNGTLHLLLGGDGKGADFS-----ELASLINQPNI-I 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L    PRS       TM+     ++ +L  GD+V++
Sbjct: 365 CYCFGQDGEQLAALSPRSQR---FSTMEEAINALRPTLSAGDMVLL 407


>gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 314

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 105/301 (34%), Gaps = 31/301 (10%)

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTI 223
            E+      ++R   + +     + T +   HL     +E    AK   F+  LEK    
Sbjct: 1   MEVSSHAAHQMRI--YGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKA 58

Query: 224 F--LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD + E L  +     I  + S+G+    +F++   +   E  +  V  QGK  
Sbjct: 59  VFSINVDDFYGERLYRQLK--NIANVISYGRKSE-EFKIIDMQTQPEGCFFTVSFQGKRF 115

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G     N+      ++    D++   +A +   P  G   R+    ++ F  +
Sbjct: 116 NLYSKLRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRG---RFEIVYSKDFLVV 172

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D  Y   P +++   ++L  I     GR I V G     G+  ++    + ++      
Sbjct: 173 ND--YAHTPDALE---NILKSIQKLKRGRLIVVFGA---GGDRDKTKRPKMGKIAEEL-A 223

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             + L+  +  +         +K  +     +      +           + DVV++  K
Sbjct: 224 DVIVLTSDNPRSEDPKDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGK 283

Query: 451 S 451
            
Sbjct: 284 G 284


>gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1346]
          Length = 516

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|126640338|ref|YP_001083322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ATCC 17978]
          Length = 435

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 87  RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 141

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 142 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 194

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 195 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLACGLQRLIKS 249

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 250 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 306

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +   +    
Sbjct: 307 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYAKV---- 361

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 362 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 407


>gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
 gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
          Length = 516

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
 gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
          Length = 508

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0017]
          Length = 516

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
 gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
          Length = 480

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 65  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 122

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 123 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 180

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 181 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 238 QKVPAIV-YGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 352 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 406

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 407 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 452


>gi|86153443|ref|ZP_01071647.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843169|gb|EAQ60380.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 475

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 132/356 (37%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           +     R      II IT S GKT+ K  L   L    K+Y    S N  +G+   + A 
Sbjct: 144 QAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINAN 203

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D    I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E   
Sbjct: 204 LSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L + +     K I  +        +L       E    +V 
Sbjct: 264 SKRLEKAF-----------LHSSTQKEEDKLISLYND------KLSLIHSSLEGLEFKVD 306

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++ KS +     +G   AQN+ + +     L   ++   K +   +  E R +     L+
Sbjct: 307 IENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLS 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID+ +N N   M  +  +        +GR++ V   + E+   S+  +I LA++
Sbjct: 363 REPKFIIDDGFNGNFKGMSTSYKLCKS----YKGRKVLVSPGIVEV---SEEENIKLAKI 415

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           ++        +S        +   + + +     +    L   +      GD+++ 
Sbjct: 416 INEC-FDLAIIS---AQINAEIFKKELKIKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|323356550|ref|YP_004222946.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
 gi|323272921|dbj|BAJ73066.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
          Length = 468

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 152/409 (37%), Gaps = 38/409 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A   G    VV+T  +       +     +  L  +++      L     +++
Sbjct: 65  GHD----AAHLGDADTVVHTGAIWPENPEFVTAK--ERGLHVIHRSQALHWLIGGRRLVS 118

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTT+  M+  AL +++         +        +A +      G  +L +   
Sbjct: 119 VAGAHGKTTSTGMIVTALRALE--------LDPTFVNGGVIADLGASSGTGSDDLVVIEA 170

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E      L    +A+IT + P HL ++   +   +A A   +   +   + ++ DD+  
Sbjct: 171 DESDGTFELYDTSVALITNVDPDHLDHYGSRDAFDAAFARFADAASE--AVVISADDAGA 228

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             ++ +   +    + +FG+   AD +L   +         +   G+S+EV     G H 
Sbjct: 229 RAVRER---ITHANVITFGEDPGADVRLSGIR-TDGPVAFTLTADGESVEVQLRVPGAHN 284

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N    + ++ +L   +  A +A+  F    G  +R+     Q   ++ D+ Y  +P  
Sbjct: 285 AVNAAGAVAVLRVLGHSLADAARAVEGFG---GTVRRFELHGVQHGVSVYDD-YAHHPTE 340

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV----------LSLYNIS 402
           + AA+S    +   GEGR IA+          +Q  + + AEV          L +Y   
Sbjct: 341 VAAALSAARTV--VGEGRIIAI--QQPHTYSRTQEMYREFAEVLETHADHTVMLDVYGAR 396

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              + G     +  A     HVHY         +       GD V+   
Sbjct: 397 EDPVPGVTGELVSGAFADPEHVHYVPDWQAAADYTARIARPGDYVITLG 445


>gi|255279944|ref|ZP_05344499.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
 gi|255269717|gb|EET62922.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
          Length = 459

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 153/413 (37%), Gaps = 41/413 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     +     IP+    ++LG L K             IA++G+ GKTTT  M
Sbjct: 77  AAIHPDNPEYKAAADAGIPMLTRAELLGQLMKNY--------PVPIAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L           + +  I V   L  +  ++  G  ++ ++   E         P 
Sbjct: 129 ISHLL--------LADNDDPTISVGGILPVIHGNIRVGGGDIFLTEACEYTNSFLDFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   HL  F  I +I  +       L   GT+ +N      E +   +  L  +
Sbjct: 181 IGIILNIDADHLDFFKDINDIRHSFRRFARLLPANGTLIINRAIPQVEEI---TDGLACR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            IY +G  +   +            +  +++  G+ +        G H  +N +  L + 
Sbjct: 238 VIY-YGVQEGRGYSAENISYNELACASFDLKRDGELLGHYELCVPGIHNVENAVAALALA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
            +L     TA K L  F    G  +R++     G  T++D+ Y  +P  + A ++     
Sbjct: 297 DLLQIPRQTAQKGLKDFT---GTDRRFQYKGKVGGVTIVDD-YAHHPTEITATLTAAKNC 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A++ D  +   LS +  + LA++ +     ++ +S   +   
Sbjct: 353 PHETLWCVFQPHTYTRTKALMDDFAK--ALSLADKVVLADIYAARETDNLGISSDTLREK 410

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +AL      +Y  + D +  F+    V GD+++   +      ++   LL E
Sbjct: 411 IEAL--GTEAYYFPSFDEIETFLLEKCVHGDLLITMGAGDI--VKIGEKLLGE 459


>gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 461

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 127/360 (35%), Gaps = 33/360 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    + +IAITGS GKTTT   L   L +     +  G+    +   + LA
Sbjct: 92  ISEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                  + + EL    L  +    +  R HIA++  I P HL  +   +E  A AK  I
Sbjct: 152 ----PHAYYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHQMELYARAKMRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +  E T       +D + + L  +      + I+ F    ++D         S    + 
Sbjct: 204 TQNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIF-FSTKASSD---DAVVASSHNGQLR 259

Query: 274 VQLQG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             LQ    + +E      G H  QN L        L    +    +L  F        R 
Sbjct: 260 FALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETFTNVP---HRL 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +      I++S   N  S   A+  + +         I +LG     G    + + 
Sbjct: 317 EYIASIDGVDYINDSKATNINSTWYALESMRK-------PTILILG-----GTDKGNDYN 364

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           DL E++    +  ++L+      L  +    I  H    +M       +     GD V++
Sbjct: 365 DLMELVKEKVVGLIYLT-TDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAGDTVLL 423


>gi|314936164|ref|ZP_07843511.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654783|gb|EFS18528.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 437

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 134/361 (37%), Gaps = 50/361 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE
Sbjct: 100 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++ASA  E+   ++K   I   
Sbjct: 151 A-----CEYRRHFLSYHPDYAIMTNIDYDHPDYFKNIDDVASAFQEMANNVKK--AIIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD     LKA         IY +G SKN D      +     +  +V + G+  +    
Sbjct: 204 GDDEHLRNLKADV------PIYYYGLSKNDDVYADNIQITENGTQFDVYINGEYYDQFLT 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN L  + I  +   DV+   +AL  F   + R      +       ++ + 
Sbjct: 258 PQYGNHNVQNALAVITISYLEKMDVNNIKEALETFGGVKRRFNETFVSKQ-----VLVDD 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P+ +   +AV          +Q+F  + A+ LS     HV+
Sbjct: 313 YAHHPREISATIETARKKYPNKD--VVAVF--QPHTFSRTQAFLDEFADALSK--ADHVF 366

Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L           G   L ++D + R       +  +     ++    D  V++   +   
Sbjct: 367 LCEIFGSIRENTGE--LTIQDLINRIDGSALID--ENSIDVLEK--FDNAVILFMGAGDI 420

Query: 456 G 456
            
Sbjct: 421 Q 421


>gi|306827028|ref|ZP_07460326.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430774|gb|EFM33785.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
          Length = 438

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 92  AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 148

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 149 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 204

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN +      L   + A    T+  F   K  D   L+      ++  +        
Sbjct: 205 YLILNANQEISATLAKTTQA----TVIPFSTQKVVDGAYLKDGILYFKEQAIIAATD--- 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +     D   + LS F   + R +R          T
Sbjct: 258 ----LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDIT 310

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           R I + G   + G        DL        
Sbjct: 311 FYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LG 357

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 358 LKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
          Length = 449

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  +     G+          +A+   + D
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP---ASQVAQTATEKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P H+      E   +AK  + + + +  
Sbjct: 163 VLVMELSSFQLMGIE----AFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I LN++    + L  K+ A     +  F   +  D          E   ++ + +    
Sbjct: 219 VIVLNFNQDLAKELATKTKA----RVLPFSTIEKVD------GAYLEDGLLKFKGEAVMR 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   + +   + LS F   +    R +          
Sbjct: 269 ADELGVPGSHNVENALATIAVAKVRGVENEVIKETLSAFGGVK---HRLQYVDEIQGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G         +A       +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPHIA------GL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 373 KEMVILGESAPRVKRAADKAG-VSYVDATDVADAAKKAFDLASPGDVVLL 421


>gi|226711953|sp|A3M1C6|MURD_ACIBT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193076113|gb|ABO10720.2| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 17978]
          Length = 448

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLACGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +   +    
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYAKV---- 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 375 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|291518352|emb|CBK73573.1| UDP-N-acetylmuramate--L-alanine ligase [Butyrivibrio fibrisolvens
           16/4]
          Length = 414

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 123/348 (35%), Gaps = 33/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           + + A  I + G+ GKTTT  M++  L           S    I V   L  +  +V  G
Sbjct: 86  MENYANSITVAGTHGKTTTTSMVSQIL--------LETSKEPTITVGAILDAIHSNVHVG 137

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             ++ ++   E     H   P   +I  +   HL  F  ++ + ++  +  E     G +
Sbjct: 138 DSDIFVAEACEYTNSFHSFFPKYNIILNVEADHLDFFKNLDNVRASFRKFAENTSDDGAL 197

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSME 282
            +N +                  + ++    +AD    +     +  +      +G+++E
Sbjct: 198 IINNEIDNVSYFTEGLKC----KVITYALHGDADIVPTEISYNEKGFASFVPVYKGQALE 253

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G H   N L  + +   +  D       LS F    G  +R+         T+
Sbjct: 254 RITLNVPGDHNISNALSAIVLCLEMGVDYSCIKTGLSKFG---GAHRRFELKGIYKGATV 310

Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           ID+ Y  +P  ++A+++  +             H   R +++L D  E    +     D+
Sbjct: 311 IDD-YAHHPTEIRASLAAAANYPHNRIIVCFQSHTYTRTLSLLDDFAEALSAA-----DI 364

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQS 439
             +  +Y      + G     + D L +     HY  T +    F++ 
Sbjct: 365 VILPDIYAAREPDIYGVSSKDIADRLEKLGTEAHYLGTFEACEKFLKK 412


>gi|47097065|ref|ZP_00234636.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898227|ref|ZP_05258151.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           J0161]
 gi|254912280|ref|ZP_05262292.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
 gi|254936607|ref|ZP_05268304.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|47014552|gb|EAL05514.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609204|gb|EEW21812.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|293590260|gb|EFF98594.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
          Length = 447

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 149/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                 D  +  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKDAKYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD+    L           I  FG  +  +FQ +   + +  +  +V  + + +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSF 255

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+     L  F   +    R      +G   L+D
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVK----RRFSITEKGNQVLVD 311

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 312 D-YAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
 gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
          Length = 513

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 162/466 (34%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  L +  ++M   + +   
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDG--LEIYVSEMPYEVPAQLG 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|228475935|ref|ZP_04060644.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119]
 gi|228270006|gb|EEK11480.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119]
          Length = 439

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 134/361 (37%), Gaps = 50/361 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE
Sbjct: 102 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++ASA  E+   ++K   I   
Sbjct: 153 A-----CEYRRHFLSYHPDYAIMTNIDYDHPDYFKNIDDVASAFQEMANNVKK--AIIAW 205

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD     LKA         IY +G SKN D      +     +  +V + G+  +    
Sbjct: 206 GDDEHLRNLKADV------PIYYYGLSKNDDVYADNIQITENGTQFDVYINGEYYDQFLT 259

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN L  + I  +   DV+   +AL  F   + R      +       ++ + 
Sbjct: 260 PQYGNHNVQNALAVITISYLEKMDVNNIKEALETFGGVKRRFNETFVSKQ-----VLVDD 314

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P+ +   +AV          +Q+F  + A+ LS     HV+
Sbjct: 315 YAHHPREISATIETARKKYPNKD--VVAVF--QPHTFSRTQAFLDEFADALSK--ADHVF 368

Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L           G   L ++D + R       +  +     ++    D  V++   +   
Sbjct: 369 LCEIFGSIRENTGE--LTIQDLINRIDGSALID--ENSIDVLEK--FDNAVILFMGAGDI 422

Query: 456 G 456
            
Sbjct: 423 Q 423


>gi|196230906|ref|ZP_03129767.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
 gi|196225247|gb|EDY19756.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
          Length = 766

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 125/357 (35%), Gaps = 33/357 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G  GKTTT  M    L                I +  T A      ++ + E    
Sbjct: 118 IVVCGMHGKTTTSSMAAHVLKVGG--LHPSHYVGAEIPILGTNALWDPTGEYLVAE---- 171

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  A++  I   HL  ++ +  I     ++       G +  + DD+
Sbjct: 172 -GDESDGTLAFYHPEHAIVLNIEEEHLDYYADLAAIEVVFNQLLSQTR--GKVIFSADDA 228

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               + +           S+G+S  A ++         QS   V   G+ +  +  +  G
Sbjct: 229 NATRICSTHPGA-----ISYGESHTAFYRFDDVHTKDFQSHFRVLRGGEPLGAITLNVPG 283

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N +  + + + L        +AL  F    G  +R+        + ++D+ Y  +
Sbjct: 284 RHNVSNSVGAIALATELGVPFAKIAEALESF---RGARRRFEIKYRSDRYMVVDD-YGHH 339

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-------ELSQSF-HIDLAEVLSLYNI 401
           P+ +KA ++     + +   +R+  +              E  ++F H D+A +  +Y  
Sbjct: 340 PSEVKATLAT----AKNTGRKRVLCMFQPHRYSRTLKLKAEFGRAFHHADVAVIADVYPA 395

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           S + + G     + D + R  H    +      + L I  +L  GDVV+   + +  
Sbjct: 396 SELPIDGVSGQTIVDEMLREGHEAASFQPDRKKIALEIGRALEPGDVVISLGAGNIH 452


>gi|94988878|ref|YP_596979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS9429]
 gi|94992769|ref|YP_600868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS2096]
 gi|122063265|sp|Q1JAT4|MURD_STRPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063266|sp|Q1JKY4|MURD_STRPC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94542386|gb|ABF32435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS9429]
 gi|94546277|gb|ABF36324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS2096]
          Length = 452

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 124/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 106 AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 163 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN +      L   + A    T+  F   K  D              +  + Q    
Sbjct: 219 YLILNANQEISATLAKTTKA----TVIPFSTQKVVD------GAYLNDGILYFKEQAIIA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +     D   + LS F   + R +R          T 
Sbjct: 269 ATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDITF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + K A+S           R I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATKKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 373 KQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 152/432 (35%), Gaps = 57/432 (13%)

Query: 62  QKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLGA--LNKLAVAARLRSKATI 110
           + GA L + ++      G+  +         P F     L    L++  + A L      
Sbjct: 44  EAGATLFIGHSASYIKPGTTIVYTSDIKESNPEFIAAQQLKCPMLHRSDLLALLMQNRKT 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-----IF 165
           +A+TG+ GKTTT  +L+  L    +        +    V   +A++  +   G     + 
Sbjct: 104 LAVTGTHGKTTTSSLLSWVLHHAGQ--------DPSFAVGGVIAQLNANAQHGKGDYFVA 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R+      P+  +IT I   H++ +   E +  A  +  + +E    +F 
Sbjct: 156 EADESDGSFLRYT-----PYGGIITNIDLDHMNYYQTEEALVGAFHQFAKKVESADHLFW 210

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             DDS  + L  +          S+G + +    + ++ Q   ++  ++  +G     + 
Sbjct: 211 CGDDSRLQKLNIEG--------VSYGFNSDCQLHILQFTQKGWKTSFDITFRGLQYRQIE 262

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG +   N     G+   +  +     KALS F    G G+R      +     ID+
Sbjct: 263 IAQIGSYNVLNSAAVFGLALQMGIEEHAIRKALSTF---PGVGRRCTMRGQKQEILFIDD 319

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--------HIDLAEVL 396
            Y  +P  +      L  I      +R+ VL                       D+  V 
Sbjct: 320 -YAHHPNEIAV---TLRAIRDAIGEKRLIVLFQPHRYSRTKDCLGTYRGIFESADMVYVT 375

Query: 397 SLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +Y+     + G     + D L   RS   +YS   + +   +  +L   DVVV   +  
Sbjct: 376 DIYSAGEQEIPGVTTQKVFDELSQDRSPDFYYSPRKE-IVEKVYQTLFPHDVVVTLGAGD 434

Query: 455 CGFYRLINLLLE 466
                +  LL +
Sbjct: 435 IH-AAIPELLQK 445


>gi|260891629|ref|ZP_05902892.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
 gi|260858639|gb|EEX73139.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
          Length = 453

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 148/415 (35%), Gaps = 48/415 (11%)

Query: 56  FILHAVQ----KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           +I    +    KG  L V +T +  +        + VD+ +  + +  + A + ++   I
Sbjct: 54  YIGQVEENVKDKGIDLFVYSTAIKETNPEYK---YIVDNNIKKIKRGELLAEIMNRFDGI 110

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKTTT  M+++AL   +  +  +G     I           +   G  E  ++ 
Sbjct: 111 AVAGTHGKTTTSSMMSVALLEKEP-FIVVGGIIPEIRS---------NSQIGNSEYFIAE 160

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E       ++P  +V+T I   HL +    E I  +  +  +  EK     L  D   
Sbjct: 161 ADESDNSFLYIKPKYSVVTNIEADHLDHHGTFENIKKSFEQFIDSTEK--IAVLCKD--- 215

Query: 232 FELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
              ++     +  K +  +  K + AD   +  +  +  +  EV  +G+ +        G
Sbjct: 216 --TVEKVGLNIKNKNVVWYSIKDETADIYAKNIRVENGITSFEVVKKGEDLGTFSLSIPG 273

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +        ++    + +  F   +G  +RY+   +     LID+ Y  +
Sbjct: 274 EHNVSNSLPVIYFAHEFKCNMKKVKERILKF---KGANRRYQVIYD-NNLRLIDD-YAHH 328

Query: 350 PASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P  +K  I+               PH   R      D     + +         +L +Y 
Sbjct: 329 PTEVKVTINAAHNTEKGKVTVIFQPHRYSRTKFFFDDFVNSLKDADDL-----ILLPIYA 383

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            S     G     L + +  ++ V    T + +   I++   +G+  V   + S 
Sbjct: 384 ASEDNTYGVSSELLAEKIGGNVRVQ---TQEEIEEIIKNDRDNGNTYVFMGAGSV 435


>gi|10566906|dbj|BAB16028.1| MurD [Streptococcus pyogenes]
          Length = 439

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 93  AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 149

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 150 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 205

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN +      L   + A    T+  F   K  D   L+      ++  +        
Sbjct: 206 YLILNANQEISATLAKTTKA----TVIPFSTQKVVDGAYLKDGILYFKEQAIIAATD--- 258

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +     D   + LS F   + R +R          T
Sbjct: 259 ----LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDIT 311

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           R I + G   + G        DL        
Sbjct: 312 FYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LG 358

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 359 LKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 408


>gi|56808764|ref|ZP_00366481.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M49 591]
          Length = 438

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 92  AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 148

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 149 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 204

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN +      L   + A    T+  F   K  D   L+      ++  +        
Sbjct: 205 YLILNANQEISATLAKTTKA----TVIPFSTQKVVDGAYLKDGILYFKEQAIIAATD--- 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +     D   + LS F   + R +R          T
Sbjct: 258 ----LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDIT 310

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           R I + G   + G        DL        
Sbjct: 311 FYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LG 357

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 358 LKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|284801997|ref|YP_003413862.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284995139|ref|YP_003416907.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
 gi|284057559|gb|ADB68500.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284060606|gb|ADB71545.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
          Length = 447

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 150/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                 D  +  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKDAKYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD+    L           I  FG  +  +FQ +   + +  +  +V  + + +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSF 255

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       VD   K L  F   +    R      +G   L+D
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVDDVKKELKTFEGVK----RRFSITEKGNQVLVD 311

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 312 D-YAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|172058258|ref|YP_001814718.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sibiricum
           255-15]
 gi|229620035|sp|B1YKE8|MURC_EXIS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171990779|gb|ACB61701.1| UDP-N-acetylmuramate--alanine ligase [Exiguobacterium sibiricum
           255-15]
          Length = 431

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 147/435 (33%), Gaps = 65/435 (14%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLGALNK---- 97
           ++G   D H F   A++  A  +        +I    + +    FG D    A  K    
Sbjct: 28  VQGSDIDKHIFTEDALR--AKGIPFFPFSAENIKEDQVIIQGNAFGDDHPEIARAKELDL 85

Query: 98  -----LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                      L  +   +AITGS GKT+T  +L+  LS I  T   IG           
Sbjct: 86  TIYHYYDFLGHLADEYRSVAITGSHGKTSTTGLLSHVLSGITPTAFLIG----------- 134

Query: 153 LARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                     G+ E    +    E +      +P  A++T I   H   F+GI+++ SA 
Sbjct: 135 -----DGTGAGVAEAKAFVFEACEYKRHFLYYKPDYAIMTNIDFDHSDYFTGIDDVVSAF 189

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E+   +++   I    DD   + L+A         I  +G  +N DF+        + +
Sbjct: 190 QEMAMQVKQ--AIVACGDDEHLQNLQANV------PILYYGFGENNDFRAENATSTPDGT 241

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +V L+       +  G G H   N L  + I      + +     LS F   +    R
Sbjct: 242 SFDVYLRDDFYGTFLIPGFGRHHVLNALSVIAICQYEGLNKEEVAARLSTFGGVK----R 297

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N G   L+D+ Y  +P  + A I    +  P  E   +A+           +SF 
Sbjct: 298 RFSETNFGSQILVDD-YAHHPKEISATIESARKKYPDRE--VVAIF--QPHTYTRLKSFM 352

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG------LFLFIQSSLV- 442
            D A  L   + +++            A  +   V   +  D       L     S L  
Sbjct: 353 DDFATSLREADATYLC------EIFGSAREQEGQVRVEDLQDKVPGSDILTRDNVSILRK 406

Query: 443 -DGDVVVVKSSNSCG 456
            +  V++   +    
Sbjct: 407 HENAVLLFMGAGDIQ 421


>gi|145220553|ref|YP_001131262.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189029018|sp|A4SH01|MURC_PROVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145206717|gb|ABP37760.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 469

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 142/430 (33%), Gaps = 60/430 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSI--------PVFGVDDVLGALNKLAVAARL 104
           GH     A Q  A  VVV +  V    ++ I        PV   D++LG L +       
Sbjct: 57  GH----QASQVEACDVVVYSSAVKPEDNVEIAAAMQAGIPVVKRDEMLGELMRYKSG--- 109

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFG 163
                 I + G+ GKTTT  M+   L    ++    IG  ++++     +        + 
Sbjct: 110 ------ICVAGTHGKTTTTAMVATMLIEAGESPTVMIGGISDYLKGSTVVG----SGKYM 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E       E       + P IAV+ ++   H+  +  +E++  A       +   G +
Sbjct: 160 VIEA-----DEYDRAFLKLTPTIAVLNSLEAEHMDTYGTLEDLKKAFVAFANKVPFYGRV 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D      +    + L      +FG  + AD         + ++   VQ  G+    
Sbjct: 215 ICCADWPEIRGIIGSLNRLCT----TFGIDEPADVSATDIVMANGRTTFTVQAFGEVYPG 270

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H  QN L        L  D    +          G  +R++   + G   L+
Sbjct: 271 VSIAVPGRHNVQNALAAFATGLELGLDPARLVHG---LGCYSGMRRRFQIKYDNGRGLLV 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P+ +KA +       P    R +AV      +   ++ F  +    LS  +  
Sbjct: 328 VDDYAHHPSEVKATLKAARNGWPS--ARIVAVF--QPHLFSRTREFASEYGWALSRADMV 383

Query: 401 -ISHVW--------LSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD----GD 445
            IS ++          G     +  A+ +    HV Y      L   +          G 
Sbjct: 384 YISSIYPSREKEEDFPGVDAGMVAGAVTKAGGKHVLYVSDSGELKRLLLEEASAAGPRGT 443

Query: 446 VVVVKSSNSC 455
           +++   +   
Sbjct: 444 ILLFMGAGDI 453


>gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
 gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
          Length = 508

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKVGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 266 QKVPAII-YGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
 gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
          Length = 480

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 65  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 122

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 123 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 180

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 181 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 238 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 352 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 406

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 407 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 452


>gi|103487364|ref|YP_616925.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingopyxis alaskensis
           RB2256]
 gi|123253129|sp|Q1GRY0|MURC_SPHAL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|98977441|gb|ABF53592.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingopyxis alaskensis
           RB2256]
          Length = 477

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 130/356 (36%), Gaps = 39/356 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IP+    ++L  L +L            +AI G+ GKTTT  ++   L +       I  
Sbjct: 92  IPIVRRAEMLAELMRLKS---------TVAIAGTHGKTTTTSLVAALLDAGGIDPTVIN- 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               I    + AR+    D+ + E   S    +R     +   IAV+T I P HL ++  
Sbjct: 142 -GGIINNYGSNARLGAS-DWMVVEADESDGSFLR-----LDGTIAVVTNIDPEHLDHYGS 194

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + I  A  E  E +   G   L  D      ++A    +  + I ++G S  AD +   
Sbjct: 195 FDAIKDAFVEFIENVPFYGAAMLCLDHP---EVQAIIPRIRDRRIITYGFSAQADVRGTN 251

Query: 263 WKQCSEQSWMEVQLQGKSME------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                + +  +V ++ +         +     G H  QN L  + +   +    +  +  
Sbjct: 252 VTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQNALAAVAVALHMGVPDEKIVSG 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV-- 374
            + F   + R  +    +       + + Y  +P  ++A +S   +    G GR +AV  
Sbjct: 312 FNGFAGVKRRFTKVGEIVTDEGVVTVIDDYAHHPVEIRAVLSAARE--GAGAGRVVAVVQ 369

Query: 375 ------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 L D   M +  Q+F+  D+   L +Y      + G    AL   L    H
Sbjct: 370 PHRFTRLRD--HMDDFQQAFNDADMVLALPVYAAGESPIEGVSSDALVRGLRDRGH 423


>gi|291276690|ref|YP_003516462.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
 gi|290963884|emb|CBG39720.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
          Length = 490

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              IIAIT S GKT+ K  L   L +  + YA   S N   G+   +   +P   +  I 
Sbjct: 164 DLKIIAITASYGKTSIKNFLYQILRTQYQVYATPRSVNTIKGIVSDINENLPPHTEIYIV 223

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  + HL+     +I  +   HL  F  +E I   K E+ E         +
Sbjct: 224 EAGARQKGDIAEIAHLLNHQYGIIGEVGEQHLEYFKKLENIMQTKFELLESNRLE-FALI 282

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D++F + L         K I  F         LR  +   E++  E++++        
Sbjct: 283 FKDNTFPQYLSKN------KKIQYFPTE------LRNEQANLEETSFELEIEQNFYTFKT 330

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G     N+   + +   L   + T  + L    P   R  +           ++D S
Sbjct: 331 NILGAFNIHNLSAAILLGHHLKIPIPTMQRVLGTLQPIPHRLTKEVV----NGKMILDSS 386

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  ++    +I+   +GR++ +   + E  E S   +I LA+ +         
Sbjct: 387 FNGNLNGMLESV----RIAGLYDGRKVIITPGIIESDEKS---NITLAKAIDST-FDMAI 438

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G     +     R       +    L  F+ +S   GD+++ 
Sbjct: 439 ITGELNSHILSQHIRRPQKIVLKDKSQLQNFLLNSTYKGDLILF 482


>gi|139473454|ref|YP_001128170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes str. Manfredo]
 gi|158512776|sp|A2RDK9|MURD_STRPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134271701|emb|CAM29934.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes str. Manfredo]
          Length = 452

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 125/357 (35%), Gaps = 36/357 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L      A   S+A II ITGS GKTTT  M+   L++  ++    G+          + 
Sbjct: 99  LLTEVELAYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVV 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +  +  D  + EL    L       +  RPHIAVIT + P HL      E+  +AK  I 
Sbjct: 156 QKAIAGDTLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQ 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             + ++  + LN +      L   + A    T+  F   K  D              +  
Sbjct: 212 AQMTESDYLILNANQEISATLAKTTKA----TVIPFSTQKVVD------GAYLNDGILYF 261

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H  +N L T+ +  +     D   + LS F   + R +R     
Sbjct: 262 KEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---G 318

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T  ++S + N  + + A+S           R I + G   + G        DL  
Sbjct: 319 QIKDITFYNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL-- 369

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
                 +  + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 370 ----LGLKQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|52786856|ref|YP_092685.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|163119604|ref|YP_080271.2| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|319647385|ref|ZP_08001607.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. BT1B_CT2]
 gi|59798182|sp|Q65G22|MURC_BACLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52349358|gb|AAU41992.1| MurC [Bacillus licheniformis ATCC 14580]
 gi|145903114|gb|AAU24633.2| UDP-N-acetyl muramate-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|317390732|gb|EFV71537.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. BT1B_CT2]
          Length = 432

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 133/362 (36%), Gaps = 52/362 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K T IA+TG+ GKT+T  +L+  +   K T   IG             +   + ++ + E
Sbjct: 100 KFTSIAVTGAHGKTSTTGLLSHVIKKAKPTSYLIGDG---------TGKGCENSEYFVLE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R      +P  A++T I   H   F+ I+++  A   +   + K   I   
Sbjct: 151 A-----CEYRRHFLSYQPDYAIMTNIDFDHPDYFANIDDVFDAFQTMALQVNKG--IIAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVH 285
            DD +   + A         +  +G ++  DFQ R   + +E +  +V ++    +    
Sbjct: 204 GDDEYLMKIHANV------PVVYYGFAEENDFQARNVIKNTEGTTFDVFVRNTFYDTFYI 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + +      DVD   + L  F   +    R     + G   LID+ 
Sbjct: 258 PAYGSHNVLNALAVIALCHYEQVDVDIIKEGLQTFGGVK----RRFNEKHAGSQVLIDD- 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I    Q  P  +   +AV          +QSF  + AE L      +V+
Sbjct: 313 YAHHPTEITVTIEAARQKYPERD--IVAVF--QPHTFTRTQSFLNEFAESLKK--ADYVY 366

Query: 406 LSGFHVLA-----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L      A           L++ +P++  +  ++T       ++    +  V++   +  
Sbjct: 367 LCDIFGSARENAGKLTIGDLQEKIPQAKLIDENDT-----SILKEH--ENAVLIFMGAGD 419

Query: 455 CG 456
             
Sbjct: 420 IQ 421


>gi|42523429|ref|NP_968809.1| hypothetical protein Bd1952 [Bdellovibrio bacteriovorus HD100]
 gi|39575635|emb|CAE79802.1| mpl [Bdellovibrio bacteriovorus HD100]
          Length = 451

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 150/418 (35%), Gaps = 37/418 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            ++  + +    +  L IP   +     A+ +  +  R       + I+G+ GKTTT  M
Sbjct: 57  NVISASNEEAQELMKLGIPYTSLP---KAMGEFIIENRES-----VVISGTHGKTTTTSM 108

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--R 183
           +     +        G     I    + +    + ++ I E           +   +  R
Sbjct: 109 MAWVAENAGVK---PGFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPKFIHYR 165

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   ++T++   H   +  ++++  + A + + L + GT+    +D+    L+  +    
Sbjct: 166 PKHVILTSVEFDHADIYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTK--- 222

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
            K  +++G    ADF+ +   Q +     EV  +G+ M        G +   N    + +
Sbjct: 223 CKNSFTYGFGAEADFRAKIMFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAM 282

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L    +    AL  F   +    R +  L +    L+ E +  +P +++     +  
Sbjct: 283 SKMLGFSENRIQIALESFEGVK----RRQEILGEPNGILVIEDFAHHPTAVR---ETVKG 335

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-------EVLSLYNISHVWLSGFHVLALK 415
           I     GR++  + +        + F  D         EVL         +   +  +  
Sbjct: 336 IQKKYPGRKVFSVFEPRSATSRRKVFQKDYVEAFKGSHEVLLAKAFDQTKIDEENRFSTH 395

Query: 416 DALPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           + +      H      +T D +   ++S    GDV+++  SN  GF  +   LL+   
Sbjct: 396 ELVDDLKKTHVTAADFDTADDIVAALKSKAHKGDVILIM-SNG-GFDGIYTKLLKALE 451


>gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK150]
          Length = 459

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 126/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQTASSKD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IA IT + P HL     +EE A+AK  I + +    
Sbjct: 172 TLVMELSSFQLMGIEDF----HPQIAAITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A     +  F  ++  D          +   +  + +    
Sbjct: 228 YLVLNFNQDWAKEMASQTQAA----VVPFSTTEKVD------GAYLDGDVLTFRGEAIMQ 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 278 AAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGRVNEVVF 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 335 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 381

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A     +    +  +        +    GD++++
Sbjct: 382 KKMVILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIILL 430


>gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1341]
          Length = 516

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2137]
 gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0031]
 gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0043]
          Length = 516

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
 gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
          Length = 513

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKVGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 271 QKVPAII-YGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|315282543|ref|ZP_07870931.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
 gi|313613809|gb|EFR87565.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
          Length = 447

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 150/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                   ++  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
              DD+    L           I  FG  +  +FQ +   + +  +  +V  +G+ +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFDEENEFQAKNVIKETTGTKFDVYHRGEFLGSF 255

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+     L  F   +      R ++ +    ++ 
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEAVKNELKTFEGVK-----RRFSITEKANQVLV 310

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 311 DDYAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|262282744|ref|ZP_06060512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
 gi|262262035|gb|EEY80733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
          Length = 450

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 130/350 (37%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFP---ASQVAQSASGKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL      EE A+AK  I + +    
Sbjct: 163 TLVMELSSFQLMGIE----AFHPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++  + + + +++ A    T+  F  ++  D          +   +  + +    
Sbjct: 219 YLVLNFNQDWAKGMASQTQA----TVVPFSTTEKED------GAYLDGDVLTFRGEAIIK 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 269 VAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVK---HRLQYVGQVNEVAF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDL------KGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y +  D         +    GD+V++
Sbjct: 373 KKMVILGQSAPRVKRAADQA-EVSYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|191638701|ref|YP_001987867.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BL23]
 gi|229620043|sp|B3WF58|MURC_LACCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190713003|emb|CAQ67009.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus casei BL23]
 gi|327382742|gb|AEA54218.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W]
 gi|327385929|gb|AEA57403.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II]
          Length = 436

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 124/371 (33%), Gaps = 51/371 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGIPDSQFFVFEA- 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   ++G E++  A       ++K   I    D
Sbjct: 154 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYTGFEDVYDAFETEANQVKK--AIVAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DF+ R   + ++ S  +     + +       
Sbjct: 208 DPWLRKLKAKV------PVYYYGISDRDDFRARNVDRDTKGSSFDAYFHDQLIGHFFVPL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 262 FGEHSVLNALAVVAVAHMEKLDAKLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +KA +    Q  P      IAV          +Q++     +VLS       +L+
Sbjct: 317 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTFSRTQAYEPQYVQVLSQ--ADQTFLT 370

Query: 408 GFHVLALKDALP----------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-G 456
                A +              +   V + E M  L  +         VVV   +     
Sbjct: 371 PIFSSAREKTGKIRSEDITAQIKGAAVIHQEDMKPLLQY------HNAVVVFMGAGDIQK 424

Query: 457 FYRLINLLLEE 467
           + +    LL E
Sbjct: 425 YEKAYETLLAE 435


>gi|160932699|ref|ZP_02080088.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
 gi|156867773|gb|EDO61145.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
          Length = 473

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 142/376 (37%), Gaps = 41/376 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R  A  +A++G+ GKTTT  MLT  L    K   A IG     +G          +   G
Sbjct: 118 RRYADAVAVSGTHGKTTTTAMLTQILVQSGKDPTAIIGGKLPFLGG---------NSRVG 168

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+ +    E       + P +++I  I   HL  F  +  I  +  +    L+ T  +
Sbjct: 169 SSEIMVCEACEYVDTFLQLTPAVSIILNIDADHLDYFKDLNNIIKSFHQF--ALQTTKRL 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSM- 281
            +N DD+  +    K+ A       +FG     D+      +         +  +G+ + 
Sbjct: 227 VVNGDDANTQ----KAIAGVSLPAVTFGMKDTNDYYAGSIAEKKGVCEEFSLMYRGEKLA 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+V    G H   N L        L    +   K+L  F    G  +R+    N     +
Sbjct: 283 EIVLSVPGEHNIYNALAAAAAAHTLGVSPEDIAKSLHAFT---GVHRRFEVLGNPSGIMV 339

Query: 342 IDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            D+ +  +P  + A ++   ++          PH   R   +L D  +   LS    + +
Sbjct: 340 ADD-FAHHPTELSATLTAAMKMGFHTVWAVFQPHTYSRTALLLEDFAK--ALSIPDRVVM 396

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +E+L +  ++   +       L D +P S+   + +T + +  ++ +    GD+++    
Sbjct: 397 SEILPVREVNTYHIY---TKDLADKIPGSV---WFDTFEEITDYVTAHAEPGDLILTLG- 449

Query: 453 NSCGFYRLINLLLEEF 468
                Y+  +++L+  
Sbjct: 450 -GGNVYQCADMILKRL 464


>gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis V583]
 gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
 gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Enterococcus faecalis V583]
 gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
          Length = 508

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           AR01/DG]
 gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           ARO1/DG]
          Length = 508

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
 gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
          Length = 508

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|312114843|ref|YP_004012439.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219972|gb|ADP71340.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 477

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 142/427 (33%), Gaps = 51/427 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      + +     +PVF   + L AL K             I +TGS GKTTT  M
Sbjct: 74  SAVKEGNPELQAARERGLPVFSRAETLAALMK---------GYRTICVTGSHGKTTTTSM 124

Query: 126 LTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   +          +G      G   T AR+       + E   S    I+  T     
Sbjct: 125 IGWVMEKAGLDPTVLVGGVLRSWG---TNARIGASRWM-VVEADESDATFIKLPTE---- 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
            I V T I P HL  +  +E +  A       + +TG      D      L  +  A G 
Sbjct: 177 -IGVATNIDPEHLDYYGSVEALHEAFRTFLRQIPQTGVAVAGIDHPVVRELTQELAASGE 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GIGYHMAQNM 296
           +  + SFG++ +A  ++            +V + GK  E             G H A N 
Sbjct: 236 LPPLTSFGRALDARVKIDNVVSQGASVMFDVVIAGKPGEPPLRHTGVKLQVPGAHNALNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +          D     L+ F   +    R      +     I + Y  +PA + A 
Sbjct: 296 AAAIAACLHAGLSADQIFDGLASFEGVD----RRFSPRGEWNGVAIYDDYAHHPAEIAAV 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV-- 411
           +S     +    GR IAV+          QS   +     +  +   ++ V+ +G     
Sbjct: 352 LSAARGAA---RGRVIAVV--QPHRYSRLQSLFGEFCACFADADTVVVTPVYSAGEQPNG 406

Query: 412 ---LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                L D L +  H  ++  +  D L   + +    GD+V+   + +   +     L E
Sbjct: 407 IDRDTLVDGLRQQGHARIYPVDGEDTLVSTLAAVAQPGDLVLTLGAGTISEW--ARALAE 464

Query: 467 E---FPA 470
           +   +PA
Sbjct: 465 KLNHYPA 471


>gi|92114311|ref|YP_574239.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
 gi|122419689|sp|Q1QVG8|MURC_CHRSD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91797401|gb|ABE59540.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
          Length = 488

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 147/419 (35%), Gaps = 51/419 (12%)

Query: 62  QKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
             GA ++VV+T        +       IPV    ++L  L +             IA+ G
Sbjct: 79  AHGADVLVVSTAVDLENPEIRWAREHRIPVVRRAEMLAELMRFR---------HGIAVAG 129

Query: 116 SVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           + GKTTT  + +  L+      T+         +    T AR+    D+ + E   S   
Sbjct: 130 THGKTTTTSLTSTLLAEGGLDPTFV----IGGKLTSAGTNARLGEG-DYLVAEADESDAS 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +      ++P ++++T I   H++        +     E    L   G   L  DD   
Sbjct: 185 FLH-----LQPMVSIVTNIDADHMATYAGDFARLKDTFLEFLHNLPFYGLAVLCLDDDNV 239

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGY 290
             L  +      +   ++G +++AD++LR + Q   +     +       +E+     G 
Sbjct: 240 RGLLPRVQ----RQFVTYGFAEDADYRLRDFVQRGGEVQFTAERPPGMAPLEIRLGMPGR 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFTLIDESYNA 348
           H A N L  + + S    D     + L  F     R +   +  A       ++ + Y  
Sbjct: 296 HNALNALAAIAVASDAGVDDAAIQQGLLHFAGVGRRFQVHGHYPAPGGEGDVMLVDDYGH 355

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LY 399
           +P  ++  I  +    P    RR+ +L         ++  + D   VLS         +Y
Sbjct: 356 HPREVEMVIDAVRAGWPE---RRLVMLYQ-PHRYSRTRDLYEDFVRVLSGVDTLLLLDVY 411

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +     + G     L  ++ +   V   + E+   L   +   L   D+++ + +   G
Sbjct: 412 SAGESSIPGAEGRTLAGSIRQRGQVDPIFVESKQELPALLSRVLRPDDILITQGAGDIG 470


>gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
 gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
          Length = 508

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ +         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEIPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
 gi|166224763|sp|A5UIR0|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
          Length = 437

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 136/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++     +  +   H+  +  +E+   AK  I    +      LN
Sbjct: 159 LSSFQL----ETTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIHHNAK---VGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L    +   +  ++D+   AL  F   +G   R++          I+
Sbjct: 264 ---LVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 367 CYCFGRDGAQLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|289550504|ref|YP_003471408.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180036|gb|ADC87281.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 437

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 143/388 (36%), Gaps = 41/388 (10%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +       V    D+ L  +        +  + T +A+TG+ GKT+T  +L+  ++  K
Sbjct: 68  NAFPDTHEEVVRAHDLKLDVIKYHDFLGHIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDK 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT   IG     +G+P +        D+  FE       E R      RP  A++T I  
Sbjct: 128 KTSFLIGD-GTGLGIPQS--------DYFAFEA-----CEYRRHFLSYRPDYAIMTNIDF 173

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  +E++  A  E+   ++K   I    DD     L           IY +G S 
Sbjct: 174 DHPDYFKDVEDVFDAFQEMANNVKK--AIIAWGDDEHLRKLNVDI------PIYYYGLSD 225

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTA 313
             D      +   + +  +V + GK  +       G H  QN L  + I  +   DV   
Sbjct: 226 KDDVYANDIQITDKGTEFDVYINGKYYDHFLTPQYGNHNIQNALAVITISYLEDMDVANI 285

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL  F   +      R    +    ++ + Y  +P  + A I    +  P+ E   IA
Sbjct: 286 KEALETFGGVK-----RRFNETKYDQQVLVDDYAHHPREISATIETARKKYPNKE--VIA 338

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V          +Q+F  + A+ LS     HV+L      ++++           + +DG 
Sbjct: 339 VF--QPHTFSRTQAFLNEFADSLSK--ADHVFLC-EIFGSIRENTGDLTIQDLIKRVDGS 393

Query: 434 FLFIQSSLV-----DGDVVVVKSSNSCG 456
            L  ++++      D  V++   +    
Sbjct: 394 ALIDENNIDILEQFDNAVILFMGAGDIQ 421


>gi|329737491|gb|EGG73744.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU045]
          Length = 437

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 132/374 (35%), Gaps = 54/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE
Sbjct: 100 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++  A   +   ++K   I   
Sbjct: 151 A-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  +    
Sbjct: 204 GDDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQFLS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I  +   +V+   +AL  F   + R    + +       +I + 
Sbjct: 258 PQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ-----VIVDD 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P  +   +AV          +Q+F  + AE LS      V+
Sbjct: 313 YAHHPREISATIETARKKYPQKD--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADQVF 366

Query: 406 LSGFHVLALKDALPRSIHVHYSETM-----------DGLFLFIQSSLVDGDVVVVKSSNS 454
           L       +  ++  +      E +           +     ++    D  V++   +  
Sbjct: 367 LC-----EIFGSIRENTGDLTIEDLINRIDGSTLIDENSIDVLEK--FDNAVILFMGAGD 419

Query: 455 CGFYRLINLLLEEF 468
               +L+    E+ 
Sbjct: 420 IQ--KLLKAYFEKL 431


>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 437

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 132/344 (38%), Gaps = 39/344 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D D  + E
Sbjct: 105 TKPIVGITGSNGKSTVTTLVYEMAKAAGIKVGMGGNIGIP-----ALSLLNEDCDLYVLE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+   E   T  +N
Sbjct: 160 LSSFQL----ETTNSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYYNAE---TAVVN 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D     L         K + SF +++ AD+ L+            +  +   +     
Sbjct: 213 LED----KLTFGEGENQAKKVVSFAENQ-ADYWLK----TENGKQYLMAKEEVILPCDEA 263

Query: 287 -GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N+L    +   +  +++    AL  F   +G   R++ A        I++S
Sbjct: 264 ILVGRHNYMNILAATALAQAVDINLEAIRIALRQF---KGLDHRFQLAYQTNGVRWINDS 320

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S  AA++ L     + EG    +LG   +  + S     +LA++++  +IS  +
Sbjct: 321 KATNVGSTVAALAGL-----YVEGTLHLLLGGDGKGADFS-----ELADLINQPHIST-Y 369

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L     +S   H  ETM     F++  L  GD+V++
Sbjct: 370 CFGRDGKQLAALSSQS---HLFETMQQAISFLRPRLKSGDMVLL 410


>gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309B]
 gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309A]
          Length = 513

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|110598580|ref|ZP_01386848.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium ferrooxidans DSM
           13031]
 gi|110339814|gb|EAT58321.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium ferrooxidans DSM
           13031]
          Length = 471

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 132/388 (34%), Gaps = 44/388 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIG 141
           IPV   D++LG L +             I I+G+ GKTTT  M+   L    ++    IG
Sbjct: 91  IPVIKRDEMLGELMRYKSG---------ICISGTHGKTTTTAMIATMLIESGESPTVMIG 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             ++++     +     +  + + E        ++       P IA++ ++   H+  + 
Sbjct: 142 GISDYLKGSTVVG----EGKYMVIEADEFDRAFLKLT-----PTIAIVNSLESEHMDTYG 192

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++++  A       +   G +    D      +         +   +FG  + AD    
Sbjct: 193 TLDDLKQAFIAFANKVPFYGRVICCVDWPEIRKIIPSL----DRVYTTFGIEEPADVMAY 248

Query: 262 KWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 ++S   V+  G     V  +  G H   N L        L    +  I      
Sbjct: 249 DIVLEKQRSTFTVRAFGIEYRDVSINVPGRHNVLNALAAFSTGLELGIAPERLIVG---L 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G  +R++   + G   ++ + Y  +P+ +KA +          + R +AV      
Sbjct: 306 ACYSGMRRRFQVKFDNGKGLMVVDDYAHHPSEVKATVKAAKS--GWVDSRVVAVF--QPH 361

Query: 381 MGELSQSFHIDLAEVLSLYNI-----------SHVWLSGFHVLALKDALPR--SIHVHYS 427
           +   ++ F  +    LS  +I             V   G     +  A+ +    HV + 
Sbjct: 362 LFSRTKEFADEYGWALSRADIVFIADVYPSREKAVDYPGVDGTLVSTAVRKAGGKHVEFI 421

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                LF  ++   VDG +++   +   
Sbjct: 422 AERASLFAALKEYAVDGTMLLFMGAGDI 449


>gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis OG1RF]
          Length = 513

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|330994422|ref|ZP_08318347.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
 gi|329758422|gb|EGG74941.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
          Length = 482

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 146/428 (34%), Gaps = 58/428 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   G   VVV       +   V +  +  IPV    ++L  L +L       
Sbjct: 59  GHD----AANLGNAQVVVTSTAVQRDNPEVVAARARLIPVVRRAEMLAELMRLR------ 108

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +A+ G+ GKTTT  ++   L + K     I   N  I             D+ + 
Sbjct: 109 ---WSVAVGGTHGKTTTTSLVAAVLEAAKLDPTVI---NGGIIEAYGTNTRMGSGDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   I V+T + P HL ++   E + +A  +    +   G   L
Sbjct: 163 EADESDGSFLR-----LPSVITVVTNMDPEHLDHWGTEEAMQAAYDQFVSNIPFYGFAVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + +  +   L    I ++G S  AD +  K       +  EV +  ++     
Sbjct: 218 CIDHPAVQQMIPR---LSDHRIITYGFSPQADVRAEKVITDKLGATFEVVITNRNRNRSR 274

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G+H  QN L  + + + +  D  T   A + F   +   +R+      G 
Sbjct: 275 RAGPFRLPMLGHHNVQNALAAIAVGTEMEIDDATIRSAFAAFRGVK---RRFTRTGETGG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL------ 392
            T+ID+ Y  +P  + A +    Q      G  IAV+          +S   +       
Sbjct: 332 ITIIDD-YGHHPVEIAAVLKAARQAGA---GNVIAVM--QPHRYSRLKSLFNEFCTCMND 385

Query: 393 ---AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVV 447
                +  +Y      + G    AL + L    H         + L   I +    GD V
Sbjct: 386 AGTVIIADVYAAGESPIEGIDRDALVEGLRERGHRSVVPLPGPEHLAEMINAIARPGDFV 445

Query: 448 VVKSSNSC 455
           V   + S 
Sbjct: 446 VCLGAGSI 453


>gi|218247349|ref|YP_002372720.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8801]
 gi|218167827|gb|ACK66564.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8801]
          Length = 494

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 142/418 (33%), Gaps = 48/418 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N     +      P+F   DVL AL          S    IA+ G+ GKTTT  ++
Sbjct: 110 AIAKNNSEYQAAQEKGCPIFHRSDVLAALI---------SDYQSIAVAGTHGKTTTSSLV 160

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L          +G   +       L        + + E   S    ++       P 
Sbjct: 161 GYVLLKAGLDPTIIVGGEVDAWEGNAHLG----SSKYLVAEADESDGSLVKH-----SPT 211

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   H  ++  +E++           E    +    D             L   
Sbjct: 212 IGVVTNIELDHPDHYESLEQVVRTFQIFETQCE---ILVGCIDCETVR------SQLNPT 262

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             YS   +KNAD+ ++     ++ +  EV  +G+ + ++     G H   N L  + +  
Sbjct: 263 ITYSLDPTKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRLTIPGEHNVSNALAAVAVGR 322

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-I 363
            L  D      AL+ F    G  +R+         T ID+ Y  +P+ ++A +S     +
Sbjct: 323 KLGLDFQVIADALATFG---GAKRRFEHRGYSNGITFIDD-YAHHPSEIQATLSAARSKV 378

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLAL 414
             +G  R +A+          + +F           DL  +  +Y+   V +       L
Sbjct: 379 DQNGSSRVVAIF--QPHRYSRTATFLADFAQAFQAADLVILSDIYSAGEVNIHNITGQDL 436

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            +A+      V Y   +  L   +   L  GD+ +   +      ++I  ++  +  +
Sbjct: 437 ANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALFLGAG--NLNQIIPQVIARYDVV 492


>gi|149921020|ref|ZP_01909480.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818152|gb|EDM77608.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 471

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 142/423 (33%), Gaps = 53/423 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   V +     IPV    ++LG L +L            + + GS GKTTT  M
Sbjct: 73  SAIKPDNAEVVAARQRKIPVIPRAEMLGELMRLQQG---------LLVAGSHGKTTTTSM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L             +  + +   +     +   G  E+ ++   E      ++ P 
Sbjct: 124 VAAVLHGAG--------LDPTVVIGGKVNSFDSNARLGAGEIFVAEADESDGSFLVLPPT 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I   HL ++  +E +  A       +   G   +  DD     +  +      K
Sbjct: 176 HAIITNIDAEHLDHYGSLEALLDAFVGFANRVPFYGMAAICVDDPNVRAVLPRL----TK 231

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
              S+G  S++AD++  + +    +S   V   G+          G H   N L T+ + 
Sbjct: 232 RTVSYGIVSEDADYRASEIELVGGRSHFRVTAHGEDRGRFELAMPGRHNVLNALATIALC 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   KAL  F       +R           ++ + Y  +P  ++A ++     
Sbjct: 292 DEQGVSTEVTRKALREFQGV----QRRFTVRGDVDGVVVVDDYGHHPTELRATLAAARDA 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA--LKDAL 418
           +P    R +A            ++ + D A  L   +   ++ V+ +G   +     + L
Sbjct: 348 AP--TRRLVATF--QPHRYTRLRNHYEDFAASLDAADLVVLTPVYAAGEQPIEGYSAEGL 403

Query: 419 PRSIHVHY---------------SETMDGLFLFIQSSLVDGDVVVVKSSNSCG--FYRLI 461
              +                   +E ++     +      GD+V+   + +     +RL+
Sbjct: 404 GSLLRARKPERPVVLVGPQSLGRAEVVEVTTRRLHELCASGDIVLTLGAGTITQVSHRLV 463

Query: 462 NLL 464
             L
Sbjct: 464 EAL 466


>gi|19746474|ref|NP_607610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS8232]
 gi|50914620|ref|YP_060592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10394]
 gi|30316063|sp|Q8P063|MURD_STRP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390307|sp|Q5XB04|MURD_STRP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|19748678|gb|AAL98109.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes MGAS8232]
 gi|50903694|gb|AAT87409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10394]
          Length = 452

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 106 AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 163 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN +      L   + A    T+  F   K  D              +  + Q    
Sbjct: 219 YLILNANQEISATLAKTTKA----TVIPFSTQKVVD------GAYLNDGILYFKEQAIIA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +     D   + LS F   + R +R          T 
Sbjct: 269 ATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDITF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           R I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y E   +             GD +++
Sbjct: 373 KQMIILGESAERMKRAANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|284030820|ref|YP_003380751.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
 gi|283810113|gb|ADB31952.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
          Length = 479

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 149/388 (38%), Gaps = 34/388 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLT 152
           L + A  A + +    IA+ G+ GKTTT  MLT+AL   +   +YA  G+ N        
Sbjct: 102 LPRAAALASVMAGRRTIAVAGTHGKTTTTSMLTVALQHCAADPSYAIGGNLNE------- 154

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +        G   +  +   +  FLT+   P ++++T++ P HL N+        A  +
Sbjct: 155 -SGSNAHDGTGDLFVAEADESDKSFLTYG--PEVSIVTSVEPDHLDNYGDEASYTKAFED 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G + +  DD+    L   +   GI  + ++G+S +AD ++ +          
Sbjct: 212 FCDRVLPGGFLVICVDDAGARRLAGFARERGI-DVRTYGESADADLRVTEITATGAVQSF 270

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
               +G+ + VV     G H A N    L +   L        + L+ F    G G+R+ 
Sbjct: 271 VPVWRGRKLPVVNLQQAGKHNALNASAALAVGLGLGFSAADLAEGLASFT---GTGRRFE 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +    +  +SY  +P  +   ++   Q++    GR IA       +   ++ F  +
Sbjct: 328 FKGQEDGVRVY-DSYAHHPTELAVDLTAARQVAGE--GRVIACF--QPHLFSRTRIFATE 382

Query: 392 LAEVLSLYN---------ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSL 441
            +  L+L +                G     + + +P +   V +  +   +   +    
Sbjct: 383 FSAALALADEVVVMDVFAAREDPEPGVTGALIANHVPLKPEQVRFEPSWSAVPRVVADLA 442

Query: 442 VDGDVVVVKSSNSCGF--YRLINLLLEE 467
           + GD+VV   +         ++ LL E 
Sbjct: 443 LPGDLVVTLGAGDVTLIGPEVVGLLAER 470


>gi|307944893|ref|ZP_07660230.1| UDP-N-acetylmuramate--alanine ligase [Roseibium sp. TrichSKD4]
 gi|307771817|gb|EFO31041.1| UDP-N-acetylmuramate--alanine ligase [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 150/425 (35%), Gaps = 55/425 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA 108
           + HA +    A +VVV++ +      L       IPV    ++L  L +   A       
Sbjct: 57  VGHAAENLGSAEVVVVSSAIKKDNPELVAAREKLIPVVRRAEMLAELMRFKQA------- 109

Query: 109 TIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             IA+ G+ GKTTT  M+   L +  +  T    G  N +     T ARM       + E
Sbjct: 110 --IAVGGTHGKTTTTSMVAALLDAGNLDPTVINGGIINAY----GTNARMGEGPWM-VVE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    ++     +   IA++T I P HL ++   E + +A  +  E +   G   + 
Sbjct: 163 ADESDGTFVK-----LPADIAIVTNIDPEHLDHYGDFEGVKAAFRQFIENVPFYGFAVMC 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------ 280
            D    + +      +  + I ++G +  AD +         +S   V ++ +       
Sbjct: 218 LDHPEVQTMVG---TIEDRRIVTYGTNLQADVRYYDVSMDGGKSIFSVTIRDRRTGEDIV 274

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +V    G H   N+   + + S L    +     ++ F   +   +R+    +    
Sbjct: 275 LENLVLPMPGLHNVSNVTAAIAVASQLGVKPEDIKAGIAGFGGVK---RRFTHTGSVDGV 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDL 392
            + D+ Y  +P  +KA +    Q     +G+ +AV+       +     + S  F+  D 
Sbjct: 332 HVYDD-YGHHPVEIKAVLHAARQ---STKGKVVAVVQPHRYTRLQSLFDDFSSCFNDADQ 387

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVK 450
             V  ++      + G     L   L    H  V   E    L   I       D V+  
Sbjct: 388 VIVAPVFAAGEQPIDGASHHDLASGLKTRGHRAVQTIEDPSELAGMIAGVAEPDDFVICL 447

Query: 451 SSNSC 455
            + S 
Sbjct: 448 GAGSI 452


>gi|110639121|ref|YP_679330.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966617|sp|Q11RH6|MURC_CYTH3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110281802|gb|ABG59988.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 466

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 123/370 (33%), Gaps = 35/370 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   L  +   I I G+ GKTTT  M    +        A +G    +    + +  
Sbjct: 101 RSQVLGFLTKELKTIGIAGTHGKTTTSSMAAHIMHESGMPCSAFLGGITQNYNTNILIGN 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                 + + E       E       + P IAVI  + P HL  +S ++    +  E  +
Sbjct: 161 HGDGAGWVVAEA-----DEYDRSFLQLSPDIAVINNMDPDHLDIYSDVQSFYDSFNEYLK 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L+  G +    D      ++  SHA       +FG+S  AD++++            + 
Sbjct: 216 KLKPGGIVIRRVDVD----VQIPSHASLS---VTFGESVEADYRIQNVVVEDGGVTFSID 268

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                   +     G H   N              +D+   +L  F   + R +      
Sbjct: 269 HDFTRWNNIRIEMPGMHNVMNATAAFLAAHFAGVSIDSIKASLRSFGGVKRRFEYI---- 324

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +    +  + Y  +P  ++A +  +  + P    + + V      +   ++ F  + A+
Sbjct: 325 YKNTKLVYVDDYAHHPTELEALLKAVRMVFP--GKKVVTVF--QPHLFSRTRDFMQEFAQ 380

Query: 395 VLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            L+L         Y    + + G     L + +P +       + + L   ++    + D
Sbjct: 381 SLALTDELLLMEIYPARELPIEGITSDVLLNLIPSTNKKVV--SKESLLTELEKL--NFD 436

Query: 446 VVVVKSSNSC 455
           VV+   +   
Sbjct: 437 VVITAGAGDI 446


>gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
 gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
          Length = 480

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 65  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 122

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 123 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 180

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 181 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 238 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 352 TFVRE--EHSDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 406

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 407 ICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 452


>gi|222823643|ref|YP_002575217.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
 gi|222538865|gb|ACM63966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
          Length = 466

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 131/349 (37%), Gaps = 39/349 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162
              K  II IT S GKT+ K  L   L    K Y    S N  +G+   +   +  + + 
Sbjct: 146 DNPKLKIILITASFGKTSIKNFLYEVLKDEFKCYKTPRSVNTFMGIVKDINENLENNTEI 205

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G     +I  +T  + P I ++  I  AHL  F   + I +AK            
Sbjct: 206 YIVEAGAREQNDILEITEFLNPQICIVGEIGLAHLEYFKTQDNIRNAK------------ 253

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     + LK+K          +  +++  D  L   +   E    +++L     +
Sbjct: 254 ---------LQALKSKRLEKYFLHSSTLYENEFYDDCLSDVRASLEGLDFKIRLDDNIYD 304

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              + +G   A N+ + + +   L   ++  IK++S     E R +      ++    +I
Sbjct: 305 FHANLLGAFNAYNISVCILLAYYLGIKIEDIIKSISNLKAVEHRLQVI----SKEPKFII 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+ +N N   M  +  +        +GR++ V   + E+   ++  +I L ++++     
Sbjct: 361 DDGFNGNFKGMSQSYELCKS----YQGRKVLVTPGIVEV---NEEENIKLCKIINEC-FD 412

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V ++      +   L + I    +  +    L   +     +GD+++ 
Sbjct: 413 FVIITSEANSTI---LQKHITLDFYVLKEKSQLVQALSKLTQNGDLILF 458


>gi|315657994|ref|ZP_07910868.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
 gi|315497030|gb|EFU85351.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
          Length = 437

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 142/388 (36%), Gaps = 41/388 (10%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +       V    D+ L  +        +  + T +A+TG+ GKT+T  +L+  ++  K
Sbjct: 68  NAFPDTHEEVVRAHDLKLDVIKYHDFLGHIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDK 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT   IG     +G+P +        D+  FE       E R      RP  A++T I  
Sbjct: 128 KTSFLIGD-GTGLGIPQS--------DYFAFEA-----CEYRRHFLSYRPDYAIMTNIDF 173

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  +E++  A  E+   ++K   I    DD     L           IY +G S 
Sbjct: 174 DHPDYFKDVEDVFDAFQEMANNVKK--AIIAWGDDEHLRKLNVDI------PIYYYGLSD 225

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTA 313
             D      +   + +  +V + GK          G H  QN L  + I  +   DV   
Sbjct: 226 KDDVYANDIQITDKGTEFDVYINGKYYNHFLTPQYGNHNIQNALAVITISYLEDMDVANI 285

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL  F   +      R    +    ++ + Y  +P  + A I    +  P+ E   IA
Sbjct: 286 KEALETFGGVK-----RRFNETKYDQQILVDDYAHHPREISATIETARKKYPNKE--VIA 338

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V          +Q+F  + A+ LS     HV+L      ++++           + +DG 
Sbjct: 339 VF--QPHTFSRTQAFLNEFADSLSK--ADHVFLC-EIFGSIRENTGDLTIQDLIKRVDGS 393

Query: 434 FLFIQSSLV-----DGDVVVVKSSNSCG 456
            L  ++++      D  V++   +    
Sbjct: 394 ALIDENNIDILEQFDNAVILFMGAGDIQ 421


>gi|296532819|ref|ZP_06895494.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
 gi|296266856|gb|EFH12806.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
          Length = 478

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 146/445 (32%), Gaps = 61/445 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   GA  VVV       +   V +     IPV    ++L  L +L       
Sbjct: 59  GHD----AGNLGAAQVVVTSTAVKRDNPEVVAARQRLIPVVRRAEMLAELMRL------- 107

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI G+ GKTTT  ++   L + K     I   N  I           + D+ + 
Sbjct: 108 --KWGIAIGGTHGKTTTTSLVATVLEAAKLDPTVI---NGGIINAYGTNTRLGEGDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +    AV+T +   HL ++   E +    A+    +   G   L
Sbjct: 163 EADESDGSFLR-----LPAVAAVVTNMDAEHLDHWGTEEAMKQGYAQFVGNIPFYGFAVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + +         + + ++G S  AD +  +       +  EV +Q +      
Sbjct: 218 CADHPNVQAMIPHL----DRRLITYGFSPQADVRAERLITDRMGATFEVTVQDRLTGRSR 273

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +G H  QN L  + +   +  D  T   AL  F   + R  R      +  
Sbjct: 274 SLKPMRLPMLGQHNVQNALAAIAVGIEMDIDEGTIRSALLGFKGVKRRFTRV----GEVN 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---- 394
              I + Y  +P  + A +    Q         IAV+          +    +  +    
Sbjct: 330 GVQIIDDYGHHPVEIAAVLKAARQAGARD---VIAVV--QPHRYSRLKQLFEEFCQCMND 384

Query: 395 -----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVV 447
                V  +Y      + G    AL D L    H         D L   I +    GD V
Sbjct: 385 AGTVIVADVYAAGEQPIPGADRDALIDGLRAHGHRSVVPLPGPDSLPEMINAIAKPGDYV 444

Query: 448 VVKSSNSCGFYRLINLLLEEFPAIQ 472
           V   + +   +   + L E+  A+Q
Sbjct: 445 VCLGAGNITAW--AHALPEKLSALQ 467


>gi|257061316|ref|YP_003139204.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8802]
 gi|256591482|gb|ACV02369.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8802]
          Length = 494

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 142/418 (33%), Gaps = 48/418 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  N     +      P+F   DVL AL          S    IA+ G+ GKTTT  ++
Sbjct: 110 AIAKNNSEYQAAQEKGCPIFHRSDVLAALI---------SDYQSIAVAGTHGKTTTSSLV 160

Query: 127 TIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L          +G   +       L        + + E   S    ++       P 
Sbjct: 161 GYVLLKAGLDPTIIVGGEVDAWEGNAHLG----SSKYLVAEADESDGSLVKH-----SPT 211

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   H  ++  +E++           E    +    D             L   
Sbjct: 212 IGVVTNIELDHPDHYESLEQVVRTFQIFETQCE---ILVGCIDCETVR------SQLNPT 262

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             YS   +KNAD+ ++     ++ +  EV  +G+ + ++     G H   N L  + +  
Sbjct: 263 ITYSLDPAKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRLTIPGEHNVSNALAAVAVGR 322

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-I 363
            L  D      AL+ F    G  +R+         T ID+ Y  +P+ ++A +S     +
Sbjct: 323 KLGLDFQVIADALATFG---GAKRRFEHRGYSNGITFIDD-YAHHPSEIQATLSAARSKV 378

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLAL 414
             +G  R +A+          + +F           DL  +  +Y+   V +       L
Sbjct: 379 DQNGSSRVVAIF--QPHRYSRTATFLADFAQAFQAADLVILSDIYSAGEVNIHNITGQDL 436

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            +A+      V Y   +  L   +   L  GD+ +   +      ++I  ++  +  +
Sbjct: 437 ANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALFLGAG--NLNQIIPQVIARYDVV 492


>gi|94994757|ref|YP_602855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10750]
 gi|118595696|sp|Q1J5S5|MURD_STRPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94548265|gb|ABF38311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10750]
          Length = 452

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  M+   L++  ++    G+          + +  +  D
Sbjct: 106 AYFVSEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYP---ASKVVQKAIAGD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L       +  RPHIAVIT + P HL      E+  +AK  I   + ++ 
Sbjct: 163 TLVMELSSFQL----VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN +      L   + A    T+  F   K  D              +  + Q    
Sbjct: 219 YLILNANQEISATLAKTTKA----TVIPFSTQKVVD------GAYLNDGILYFKEQAIIA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +     D   + LS F   + R +R          T 
Sbjct: 269 ATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRV---GQIKDITF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           R I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSRLILIAGG-LDRGNEFDDLVPDL------LGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y E  ++             GD +++
Sbjct: 373 KQMIILGESAERMKRAANKA-EVSYLEARSVAEATELAFKLAQTGDTILL 421


>gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae NCCP11945]
 gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae NCCP11945]
          Length = 445

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 143/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +   L R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDDLLDYAHTKAKIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +   C +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKRFSLEHEADFWLERGTGCLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 ISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|47094075|ref|ZP_00231802.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|47017551|gb|EAL08357.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|328464970|gb|EGF36249.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           1816]
          Length = 447

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 151/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                   ++  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
              DD+    L           I  FG  +  +FQ +   + +  +  +V  +G+ +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSF 255

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+   K L  F   +      R ++ +    ++ 
Sbjct: 256 EIPTYGDHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVK-----RRFSITEKANQVLV 310

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 311 DDYAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           uberis 0140J]
 gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           uberis 0140J]
          Length = 453

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 123/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A IIAITGS GKTTT  M+   L+   K+    G+          +A      D
Sbjct: 106 AYLISEAPIIAITGSNGKTTTTTMIADVLNHGGKSALLSGNIGFP---ASEVAMTASQDD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L  I+       PHIA+IT + P HL      +    AK  I   +    
Sbjct: 163 ILTMELSSFQLMGIKDF----HPHIALITNLMPTHLDYHGSFDAYIQAKWNIQNNMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN +    + L  K+ A    ++  F   +       +     +        +G+ +
Sbjct: 219 VLILNAEQDQTKELAQKTQA----SLVYFSSKEK-----VEGAYQEDGKLF---YKGEYI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +         + LS F   +    R +        
Sbjct: 267 MDAQSLGVPGLHNVENALATIAVAKLSGISNQAIAETLSSFGGVK---HRLQKLGTIKDV 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + N  + + A+S            ++ ++    + G    +   D+       
Sbjct: 324 AFYNDSKSTNILACQKALSGFDN-------NKVILIAGGLDRGNAFDTLIPDI------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     +K+A  R+   +  ++ +             GD++++
Sbjct: 371 GLKKMILLGESAEKMKEAAERAGVGYLEAKDVADATRIAFEQAQPGDIILL 421


>gi|224476830|ref|YP_002634436.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254766022|sp|B9DN57|MURC_STACT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222421437|emb|CAL28251.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 437

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 130/360 (36%), Gaps = 56/360 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TG+ GKT+T  +L+  ++  K+T   IG     +G+P +             E    
Sbjct: 104 IAVTGAHGKTSTTGLLSHVMNGDKRTSFLIGD-GTGLGIPQS-------------EFFAF 149

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R       P  A++T I   H   F  ++++ +A  E+   ++K   I     D 
Sbjct: 150 EACEYRRHFLSYHPDYAIMTNIDFDHPDYFKDVDDVTNAFQEMAYNVKKG--IVAWGKDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
               +KA         IY +G  KN D      +     +  +V + GK  +       G
Sbjct: 208 HLRKIKADV------PIYYYGLEKNEDIYADNIQITEHGTQFDVYIDGKYFDQFLSPQYG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +  +   D++   +AL  F   + R    +         ++ + Y  +
Sbjct: 262 DHNILNTLAVIMVCHLEGLDIENIKEALETFGGVKRRFNETKLHNQ-----VLVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  P+ E   IAV          +++F  + AE LS      V+L   
Sbjct: 317 PREINATIETARKKYPNKE--VIAVF--QPHTFSRTKAFLEEFAESLSK--ADRVFLCD- 369

Query: 410 HVLALKDALPRSIHVHYSE-TMDGLFLFI-------QSSLV-----DGDVVVVKSSNSCG 456
                   +  SI  H    T+  L   I       ++++      D  V++   +    
Sbjct: 370 --------IFGSIREHDGSLTIQDLIDRIPGAQLIGENNVNILNEFDNAVILFMGAGDIQ 421


>gi|217964242|ref|YP_002349920.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290893199|ref|ZP_06556186.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|254766008|sp|B8DHD7|MURC_LISMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217333512|gb|ACK39306.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290557181|gb|EFD90708.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|307571190|emb|CAR84369.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes L99]
          Length = 447

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 151/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                   ++  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
              DD+    L           I  FG  +  +FQ +   + +  +  +V  +G+ +   
Sbjct: 204 --GDDAELRKLSLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSF 255

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+   K L  F   +      R ++ +    ++ 
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVK-----RRFSITEKANQVLV 310

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 311 DDYAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|119963916|ref|YP_947471.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter aurescens TC1]
 gi|189028970|sp|A1R5F9|MURC_ARTAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119950775|gb|ABM09686.1| UDP-N-acetylmuramate--alanine ligase [Arthrobacter aurescens TC1]
          Length = 456

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 136/373 (36%), Gaps = 33/373 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A   +   ++ + G+ GK+TT  M+ + L             +    +  
Sbjct: 95  LPVLHRSEALAATMAGHRVVTVAGTHGKSTTTSMVAVLLKEAG--------LDPSFAIGA 146

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +  + V+   G  ++ ++   E        RP IAV+T +   HL ++   E + ++  
Sbjct: 147 NVPALGVNAAHGSSDIFVAEADESDGSFLNYRPLIAVVTNVEADHLDHYGTPEAVFASFD 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +    L   G +    DD+    L  ++ + G   + ++G S +AD +L           
Sbjct: 207 DFAALLPAQGVLLACSDDAGARALADRTASKGTTRVLTYGTSDDADIRLHD----GGPGD 262

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + V L G   ++     G H A N      +   L  +   A  AL  F    G  +R+ 
Sbjct: 263 VSVALDGGVHKLELQVPGRHNALNAAAAFAVAVELGVEPGAAAAALGHFT---GASRRFE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    + D+ Y  +P  ++AA+S    ++      ++ VL     +   ++ F  +
Sbjct: 320 LKGRGRGVRVYDD-YAHHPTEVRAALSAARSVAGDN---KVHVLFQ-PHLFSRTREFSQE 374

Query: 392 L---------AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                     A VL +Y      + G     + D L     V    + D     + +   
Sbjct: 375 FAAALDLADTALVLDIYPAREDPIPGVTSTLITDHLVNGRLV----SADEAVDAVAAVAS 430

Query: 443 DGDVVVVKSSNSC 455
           +GDVV+   +   
Sbjct: 431 EGDVVLTVGAGDV 443


>gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402]
          Length = 303

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 94/278 (33%), Gaps = 38/278 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-----------APQEAFFAIKGP 49
           M    +  + ++AI+  +     +  +N +  DSR +               AFFA+ G 
Sbjct: 22  MEYTKSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGI 81

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSK 107
           H DG  FI  A++ GA  +      + +     I    V+DV   ++K++          
Sbjct: 82  HTDGKKFINSAIENGAVCIF-YEGDLNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 140

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----------------VP 150
             +I +TG+ GK++T   +   L+   K      +    I                  V 
Sbjct: 141 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNIVQ 200

Query: 151 LTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           L LA+M      + + E     L         V     V   +   HL     IE+    
Sbjct: 201 LRLAQMRDSGCGYAVVEASSHGLSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 260

Query: 210 KAEIFEGLEKTG------TIFLNYDDSFFELLKAKSHA 241
           KA +F  L+K           +NY+D         +  
Sbjct: 261 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQK 298


>gi|319401048|gb|EFV89267.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis
           FRI909]
          Length = 437

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 149/427 (34%), Gaps = 57/427 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         N + +     L + V    D LG          + ++ T 
Sbjct: 53  FDANNITKEMVVIQGNAFPDNHEEIVKAHELKLDVIKYHDFLG---------HVINQYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R       P  A++T I   H   F  I+++  A   +   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
           +   L           +Y +G  +  D   +  +   + +  +V +QG+  +       G
Sbjct: 208 YLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIQGEFYDQFLSPQFG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   +V+   +AL  F   + R    + +       ++ + Y  +
Sbjct: 262 NHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVSNQ-----VLVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  P  +   +AV          +Q+F  + AE LS      V+L   
Sbjct: 317 PREISATIETARKKYPQKD--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADQVFLCEI 370

Query: 410 HV--------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                     L +KD + R       +  +     ++    D  V++   +      +L+
Sbjct: 371 FGSIRENTGDLTIKDLINRIDGSTLID--ENSIDVLEK--FDNAVILFMGAGDIQ--KLL 424

Query: 462 NLLLEEF 468
               E+ 
Sbjct: 425 KAYFEKL 431


>gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
 gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
          Length = 511

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|163784032|ref|ZP_02178990.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880704|gb|EDP74250.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 167

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            ++ +N+ +++ I+  L  D + A+  L  F P +GRGK  +        T+ID++YNAN
Sbjct: 1   ENILENIAISILIMDYLGLDFEKALDTLKEFSPLDGRGKIIK----HKNLTIIDDTYNAN 56

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P S K AI  LS +    +G++I VLGDM E+G+ S+  H ++   +   NI  V+L G 
Sbjct: 57  PTSTKTAIETLSDL----KGKKILVLGDMKELGKFSKEKHEEIGRYILNSNIDKVYLYGE 112

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V  + + +       Y    + +   ++        V +K S S     +I+LL +
Sbjct: 113 EVKHIYEIIKDKKE-SYLLFKEKIAYHLKKEKEPS-FVWIKGSRSMKMEDIIHLLRQ 167


>gi|146279501|ref|YP_001169659.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557742|gb|ABP72354.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1279

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 89/422 (21%), Positives = 147/422 (34%), Gaps = 38/422 (9%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA------I 113
           AV  GA   +        + S +IP   V+        + V  R R  A +IA      +
Sbjct: 52  AVLSGADPTLA-RAADCVVASPAIPETHVERRAARRAGIPVKTRARMLAELIADRLTICV 110

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            GS GK+T   ML   LS+  K         +     +  AR+       + E   +H  
Sbjct: 111 AGSHGKSTVTAMLIHILSAAGKDDFGYMLGASFADPGIVPARLGAPDAPFVTEACEAHGA 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFF 232
              +L     P  A++T +   H  ++ G   +  A +     L   G      DD    
Sbjct: 171 LAHWL-----PSHAILTNLDDDHADHYGGPSGLRRAFSAFLSRLPPEGRAVACGDDLDVV 225

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           ++L+    A       ++G       +     Q  + S        +   +     G H 
Sbjct: 226 DILREARCAA-----LTYGFRDENALRAV---QAGDGSATVFLHGTELGALSLAVPGRHN 277

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  LG+   L     TA  AL+ FH    R  R       G    I + +  +P  
Sbjct: 278 LLNALAALGMALTLGIGFRTATGALADFHGIARRLSRI----GTGSQPRIFDDFAHHPTE 333

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAE-----VLSLYNISHVW 405
           + A+I+VL + +   +GR IA+L       +  ++  F   L       +L +  +    
Sbjct: 334 IAASIAVLRETT---QGRLIAILEPQLHSRVSRMALRFAQALGAADRSYILPVAALGEAV 390

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SSNSCGFYRLIN 462
            +G    AL DA     +   +   M  L L ++  L   D +VV   +S +    R+  
Sbjct: 391 QAGNGDAALADACRSVGLSCQHVSGMPELLLRLKDDLQGDDTLVVMAGASGAAIAPRIAE 450

Query: 463 LL 464
            L
Sbjct: 451 AL 452


>gi|46907836|ref|YP_014225.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224206|ref|YP_002758313.1| UDP-N-acetyl muramate-alanine ligase [Listeria monocytogenes
           Clip81459]
 gi|254824335|ref|ZP_05229336.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|254852227|ref|ZP_05241575.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|254931544|ref|ZP_05264903.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|254994071|ref|ZP_05276261.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J2-064]
 gi|300766118|ref|ZP_07076085.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|59798317|sp|Q71Z62|MURC_LISMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509776|sp|C1KVQ2|MURC_LISMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46881105|gb|AAT04402.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876668|emb|CAS05377.1| Putative UDP-N-acetyl muramate-alanine ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605535|gb|EEW18143.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|293583099|gb|EFF95131.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|293593569|gb|EFG01330.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|300513199|gb|EFK40279.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|332312046|gb|EGJ25141.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes str.
           Scott A]
          Length = 447

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 151/434 (34%), Gaps = 83/434 (19%)

Query: 46  IKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           I G  + D H+ I  A++ G                  +PV      LG L         
Sbjct: 65  IAGNAFPDTHEEIERALELG------------------LPVIRYHKFLGQLID------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T IAITGS GKT+T  +L+  + +I+ T   IG                   ++  
Sbjct: 100 --GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFA 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E        + +     +P  A++T I   H   F  ++++ +A   + + ++K     
Sbjct: 149 LEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
              DD+    L           I  FG  +  +FQ +   + +  +  +V  +G+ +   
Sbjct: 204 --GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSF 255

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +       V+   K L  F   +      R ++ +    ++ 
Sbjct: 256 EIPAYGDHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVK-----RRFSITEKANQVLV 310

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     
Sbjct: 311 DDYAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADE 364

Query: 404 VWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           V+L           G   +A      +  H+   E  + L  +         V++   + 
Sbjct: 365 VYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG 418

Query: 454 SC-----GFYRLIN 462
                   + ++++
Sbjct: 419 DVQKFQAAYEKVLD 432


>gi|256425928|ref|YP_003126581.1| UDP-N-acetylmuramate--L-alanine ligase [Chitinophaga pinensis DSM
           2588]
 gi|256040836|gb|ACU64380.1| UDP-N-acetylmuramate/alanine ligase [Chitinophaga pinensis DSM
           2588]
          Length = 463

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 124/374 (33%), Gaps = 41/374 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +         V    DVL  + K   A         I + G+ GKTTT  ++
Sbjct: 75  AIPASHTELIWFREKGFEVVKRSDVLQEITKELYA---------ITVGGTHGKTTTSTLI 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L      Y C       I           D    + E       E       + P +
Sbjct: 126 AHILRHTG--YGCNAFLGG-ISANYDRNFWSSDKQVAVIEA-----DEYDRSFLKLHPDV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I   HL  +   EE+  A  +    ++  GT+         + L   +   G   
Sbjct: 178 AVLTAIDADHLDIYGTEEEVQEAFIQYTRNIKAKGTLVA------KQGLHRAAELKGDNH 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I+   +   AD      +        +V Q      ++     G H  +N +  + +  +
Sbjct: 232 IWYHLEDNKADIYAANIRPDEGGYRFDVIQHNWTLTDIYLPIGGTHNIENTVAAIAVAHL 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +    A++ F   +G  +R+   +   +   ID+ Y  +P  ++A IS    + P
Sbjct: 292 LGIADEKIKAAIADF---KGIKRRFEYLVKNDYQIYIDD-YAHHPEELRALISSARALFP 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKD 416
               R+  VL     +   ++ F    AE LSL         Y    + + G H   +  
Sbjct: 348 D---RKCVVLFQ-PHLYTRTRDFATGFAESLSLADEVLLLPIYPARELPIEGVHSEMIAK 403

Query: 417 ALPRSIHVHYSETM 430
            + + + V   E +
Sbjct: 404 MITKPVQVIRKEDV 417


>gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 445

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 143/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +   L R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  KAEIF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDDLLDYAHTKAEIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +   C +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKRFSLEHEADFWLERGTGCLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 ISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae 35/02]
 gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae MS11]
 gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID18]
 gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI2]
 gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 445

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 143/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +   L R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDDLLDYAHTKAKIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +   C +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKRFSLEHEADFWLERGTGCLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 ISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|319892796|ref|YP_004149671.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162492|gb|ADV06035.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 437

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 160/440 (36%), Gaps = 55/440 (12%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           ++G   D + F   A++     ++         G   I      D    + +        
Sbjct: 28  VQGSDIDQYVFTEIALKNKGIQILPFDADNIKEGLTIIQGNAFKDTHEEIARAHELGLKV 87

Query: 106 SKAT-----------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
            +              +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P +  
Sbjct: 88  IRYHDFLSEVINEYVSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPQS-- 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                      E       E R       P  A+IT I   H   F  ++++ +A   + 
Sbjct: 145 -----------EYFAFEACEYRRHFLSYSPDYAIITNIDFDHPDYFKDVDDVINAFQGMA 193

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + ++K   I    DD + + ++          +Y +G   + D   +  +     +  + 
Sbjct: 194 KNVKK--AIIAWGDDPYVKNIEVDI------PVYYYGFDTSMDVYAQNIEVTGSGTEFDA 245

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++G+     V    G H   N L  L I  +   ++D   +AL  F   +   +R+   
Sbjct: 246 YVKGEFYGHFVSPQYGDHNILNALAVLTISYLENLNLDNIKEALITFGGVK---RRFNET 302

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q    ++ + Y  +P  + A I    +  P+ E   +A+          +++F  + A
Sbjct: 303 FAQN--QVLVDDYAHHPREISATIETARKKYPNKE--VVAIF--QPHTFSRTKAFLQEFA 356

Query: 394 EVLSLYNISHVW-LSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +VL+L + +++  + G        L++ D L      H  +  +     +Q    D  V+
Sbjct: 357 DVLNLADQTYLCDIFGSIRENQGELSINDLLKLVDGAHLID--ENSVEQLQKH--DNAVL 412

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +   +      +++   +E+
Sbjct: 413 LFMGAGDIQ--KILKAYMEK 430


>gi|329769529|ref|ZP_08260939.1| UDP-N-acetylmuramate-alanine ligase [Gemella sanguinis M325]
 gi|328838744|gb|EGF88342.1| UDP-N-acetylmuramate-alanine ligase [Gemella sanguinis M325]
          Length = 435

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 140/406 (34%), Gaps = 58/406 (14%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +     I      D+ L          +L  +   IA+TG+ GKTTT  M++       
Sbjct: 68  NAFDETHIEYRAAKDLGLKIYTYAQFLGKLLDEIPSIAVTGAHGKTTTSTMVSNIFKHNF 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T   IG    H            + D+ + E    +   + +      P+ A++T I  
Sbjct: 128 VTSFLIGDGTGHG---------EKNSDYIVAEACEYYRHFLAY-----HPNYAIVTNIDF 173

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F+   ++  A       ++   T+ +  DD     LK  +       + ++G ++
Sbjct: 174 DHPDYFNDEHDMFDAFQSFVNQVK--DTVVICGDDRLASQLKPSTA-----KVVTYGFNE 226

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             D+Q++  K  SE S  +V    + +        G H   N    + +  I     D  
Sbjct: 227 GNDYQIKNVKTTSENSKFDVYKNSELLGTFTMAVFGLHDISNATSAIALADICGLSTDEI 286

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            ++L  +H  E R   ++   N     ++ + Y  +P+ +KA I        + + + IA
Sbjct: 287 QQSLGSYHHAERRFTEHKVGTN-----IVVDDYAHHPSEIKATIDSAR--RKYSDKQIIA 339

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSI 422
           +          +  F  + AE L       V+L               +  L+   P S 
Sbjct: 340 IF--QPHTYTRTAKFLNEFAESLLT--ADKVFLCPIFASVREKEKIVGIEDLQKVTPGSE 395

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            ++  E  D L         D  V++   + +      IN L  +F
Sbjct: 396 IIYGEENFDKLN-------FDNSVILFMGAGN------INKLCNKF 428


>gi|255326230|ref|ZP_05367316.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255296684|gb|EET76015.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 495

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 138/386 (35%), Gaps = 30/386 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSY 143
           V      L  L++    A +  ++ ++A+ G+ GK+TT  M+++    +  +    +G+ 
Sbjct: 101 VAARAQGLRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQLGAQPSFAVGTV 160

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
               G    L     +    + E   S    +R+      P IAV+T + P HL  +   
Sbjct: 161 IAGRGTNAHLGAQGPET-IFVAEADESDGSFVRY-----CPAIAVVTNVEPDHLDFYETD 214

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +  A       L   G +    DD+    L A+S A G+  + ++G++ +AD ++ + 
Sbjct: 215 ERVFEAFNRFVGSLAPNGVVVTCADDAGAADLAARSRAAGV-PVVTYGEAADADLRISEI 273

Query: 264 KQCSEQSWME---------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                 S            V+ +G+  ++     G H   N         I   +     
Sbjct: 274 TSAGSSSSSHLSWSFECRGVRYEGEQ-DLALKVPGIHNQLNASAAFASALISGYEAADIA 332

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +AL+ F    G  +R+          + D+ Y  +P  +  A+     ++       I  
Sbjct: 333 RALADFV---GADRRFTLRGEVAGVKVFDD-YAHHPTEVFRALQTGRTVADGHNLYVIFQ 388

Query: 375 LGDMCEMGELSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                   E ++ F   L     A VL +Y    + + G     +  A    +      T
Sbjct: 389 PHLFSRTREFAKEFAQALSMSDRAHVLDIYPARELPIEGVTSELITGAGFSEVR---YAT 445

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +     I +   DGD+V+   +   
Sbjct: 446 AESAIEDIVACAQDGDIVMTVGAGDV 471


>gi|313608536|gb|EFR84427.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes FSL
           F2-208]
          Length = 380

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 148/427 (34%), Gaps = 82/427 (19%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D H+ I  A++ G                  +PV      LG L             T I
Sbjct: 5   DTHEEIERALELG------------------LPVIRYHKFLGQLID---------GYTSI 37

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITGS GKT+T  +L+  + +I+ T   IG                   ++   E     
Sbjct: 38  AITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFALEACEYQ 88

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              + +     +P  A++T I   H   F  ++++ +A   + + ++K        DD+ 
Sbjct: 89  RHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL--GDDAE 141

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
              L           I  FG  +  +FQ +   + +  +  +V  +G+ +        G 
Sbjct: 142 LRKLSLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGD 195

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + +       V+   K L  F   +      R ++ +    ++ + Y  +P
Sbjct: 196 HNVLNALSVIALCDYEGLPVEDVKKELKTFEGVK-----RRFSITEKANQVLVDDYAHHP 250

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
           + ++A ++   Q   + + + +AV          +++F    A+ L+L     V+L    
Sbjct: 251 SEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADEVYLCDIF 304

Query: 408 -------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
                  G   +A      +  H+   E  + L  +         V++   +        
Sbjct: 305 GSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAGDVQKFQA 358

Query: 456 GFYRLIN 462
            + ++++
Sbjct: 359 AYEKVLD 365


>gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
 gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
          Length = 445

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 143/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +   L R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  KAEIF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDDLLDYAHTKAEIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +   C +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKRFSLEHEADFWLERGTGCLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 ISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|329115578|ref|ZP_08244300.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
 gi|326695006|gb|EGE46725.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
          Length = 498

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 137/405 (33%), Gaps = 47/405 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +  +  IPV    ++L  L +L            +A+ G+ GKTTT  ++
Sbjct: 97  AVKRDNPEVVAARAKLIPVVRRAEMLAELMRLR---------WSVAVGGTHGKTTTTSLV 147

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L + K     I   N  I             D+ + E   S    +R     +   I
Sbjct: 148 AAVLEAAKLDPTVI---NGGIIEAYGTNTRMGKGDWMVVEADESDGSFLR-----LPSVI 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +V+T + P HL ++   E + +A  +    +   G   L  D    + +  +   L    
Sbjct: 200 SVVTNMDPEHLDHWGSPEAMEAAYDQFVSNVPFYGFAVLCIDHPAVQQMIPR---LSDHR 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------KSMEVVHHGIGYHMAQNMLMT 299
           I ++G S  AD +  K       +  EV L         K+       +G H  QN L  
Sbjct: 257 IVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRHTRKAGPFRLPMLGSHNVQNALAA 316

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + + +    D     L+ F   +   +R+      G  T+ID+ Y  +P  + A +  
Sbjct: 317 IAVATEMDISDDVIRSGLASFRGVK---RRFTRTGEAGGITVIDD-YGHHPVEIAAVLKA 372

Query: 360 LSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             Q         + PH   R   +  D C     + +       V  +Y      L    
Sbjct: 373 ARQAGANHVIAVMQPHRYSRLKILFSDFCACMNDADT-----VIVSDVYAAGEDPLPDAS 427

Query: 411 VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
              L + L    H       + D L   I +    GD VV   + 
Sbjct: 428 RDKLIEGLRERGHRSVVPLSSPDHLAEMINAIAKPGDYVVCLGAG 472


>gi|242243000|ref|ZP_04797445.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           W23144]
 gi|242233601|gb|EES35913.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           W23144]
          Length = 437

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 149/427 (34%), Gaps = 57/427 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +D ++     V         N + +     L + V    D LG          + ++ T 
Sbjct: 53  FDANNITKEMVVIQGNAFPDNHEEIVKAHELKLDVIKYHDFLG---------HVINQYTS 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE    
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFEA--- 151

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E R       P  A++T I   H   F  I+++  A   +   ++K   I    DD 
Sbjct: 152 --CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAWGDDE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIG 289
           +   L           +Y +G  +  D   +  +   + +  +V +QG+  +       G
Sbjct: 208 YLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIQGEFYDQFLSPQFG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + I  +   +V+   +AL  F   + R    + +       ++ + Y  +
Sbjct: 262 NHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVSNQ-----VLVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A I    +  P  +   +AV          +Q+F  + AE L+      V+L   
Sbjct: 317 PREISATIETARKKYPQKD--VVAVF--QPHTFSRTQAFLNEFAESLNK--ADQVFLCEI 370

Query: 410 HV--------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                     L +KD + R       +  +     ++    D  V++   +      +L+
Sbjct: 371 FGSIRENTGDLTIKDLINRIDGSTLID--ENSIDVLEK--FDNAVILFMGAGDIQ--KLL 424

Query: 462 NLLLEEF 468
               E+ 
Sbjct: 425 KAYFEKL 431


>gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9313]
 gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 507

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 166/488 (34%), Gaps = 48/488 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +   H LL+A+       +    +  +S DSRS+A    F  + G   DG  F   A
Sbjct: 1   MTQM--LHSLLRAVGLPVPEGLANPSLAMVSCDSRSVAQGCLFLGLPGEQVDGGSFWRQA 58

Query: 61  VQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGS 116
           +  GA   V+          G     V   + V   + +LA A   +  +   +I +TG+
Sbjct: 59  LAAGAEAAVIGPAAAALQPPGPTDAVVVVPEPVAAWVGQLAAAFWQQPSSRFALIGVTGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVD-------------V 160
            GKTTT  ++     ++ ++ A  G   +   +  VP T      D              
Sbjct: 119 NGKTTTTHLIEHLSVAVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLAQAVEAGA 178

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEK 219
           + G+ E+    L + R      R   AV T +   HL     +E    AKA++F   L +
Sbjct: 179 ELGVMEVSSHALEQQR--VAGCRFAGAVFTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLE 236

Query: 220 TG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQ 275
           +G     +N D  +   L  +      ++  + G  + AD +L+  +    S+     + 
Sbjct: 237 SGSAKAVVNIDSPWGARLAQRLGDTCWRSSLAEGVLQQADAELKMTELTMSSDGVQGRLI 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +G     N+L  +G++      +   +KA++ F    GR +R      
Sbjct: 297 SPCGEGWFDSPLMGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAA 356

Query: 336 QGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +   Y   P  ++ A+       P        V G     G+  +     +A 
Sbjct: 357 DATQVPTVLVDYAHTPDGLENALKA---SRPFTSKNLCCVFGC---GGDRDRGKRSQMAA 410

Query: 395 VLSLYNISHVWLSGFHVLA------LKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +      V ++  +         L D    +P                   +    GD
Sbjct: 411 IAARL-ADRVVVTSDNPRTEDPQQILADVVAGIPEGTTCTVEVDRAVAIALAIAEAAPGD 469

Query: 446 VVVV--KS 451
           VV+V  K 
Sbjct: 470 VVLVAGKG 477


>gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 2336]
 gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           2336]
          Length = 436

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 42/344 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IIAITGS GK+T   +++             G+          L  +  D D  + E
Sbjct: 105 NKPIIAITGSNGKSTVTTLVSEMAKEDGLKVGIGGNIGIP-----ALELLQQDYDLYVLE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A I  I+  H+  +  IE+   AK  I+E  ++     +N
Sbjct: 160 LSSFQL----ETTYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQR---AVIN 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VH 285
            +D         +    +K+  +FG+S+ AD+ L+            +  +   +     
Sbjct: 213 AEDVL-------TTTEDLKSPITFGESQ-ADYWLK----TENGKQYLMAKERLILPCDEM 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L    +V  +         AL  F    G   R++ A  +     I++S
Sbjct: 261 KLVGRHNYMNALAASALVQAVDISFTAIRTALRKFT---GLAHRFQLAYQKDDVRWINDS 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S  AA++ L     +   +   +LG   +  + S     +LA +++  +I + +
Sbjct: 318 KATNVGSTVAALTGL-----YVANKLHLLLGGDGKSADFS-----ELATLINQPHI-YCY 366

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L      S+     +TM+     I+ +L  GD+V++
Sbjct: 367 CFGQDGKELAAL---SVQSQLFDTMEQAIEAIRPNLQQGDMVLL 407


>gi|154252864|ref|YP_001413688.1| UDP-N-acetylmuramate--L-alanine ligase [Parvibaculum
           lavamentivorans DS-1]
 gi|171769613|sp|A7HVU8|MURC_PARL1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154156814|gb|ABS64031.1| UDP-N-acetylmuramate--alanine ligase [Parvibaculum lavamentivorans
           DS-1]
          Length = 491

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 139/424 (32%), Gaps = 51/424 (12%)

Query: 56  FILHAVQKGAGLVVV--------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           FI    +  A   V+        +   +    +  +PV    ++L  L +L         
Sbjct: 57  FIGQKAENLAEAQVIVVSSAIRADNPELMEARARFLPVVRRAEMLAELMRLKSC------ 110

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +AI G+ GKTTT  ++   L         I      I    T AR+    ++ + E 
Sbjct: 111 ---VAIGGTHGKTTTTSLVAAILDKAGLDPTVIN--GGIINAYGTNARLGGG-EWMVVEA 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     +   IA++T I P HL  +   +    A     E +   G   +  
Sbjct: 165 DESDGTFVK-----LPATIAIVTNIDPEHLDYYGSFDAAKDAFLAFVENVPFYGAAVMCI 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV---- 283
           D    + L  +      + I ++G +  AD +    +     +  +V +  +        
Sbjct: 220 DHPEVQALIGRVR---DRRIVTYGTNPQADIRATNARVEDGFNVFDVAITDRKTGTAREM 276

Query: 284 ---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  +G+ + +    D    AL  F   +    R    +      
Sbjct: 277 TGVRLAMHGTHNMLNSLAAIGVATQMGIADDKIRAALEGFGGVK----RRFTFVGSWNDV 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLA 393
            I + Y  +P  + A +      +   +GR IAV+       +  L   F       D  
Sbjct: 333 NIYDDYGHHPVEIAAVLQAARSAT---KGRTIAVVQPHRYTRLHNLFDEFCACFNDADAV 389

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            V  +Y      + G    AL + L    H  V   +  + L   I  +   GD+VV   
Sbjct: 390 IVADVYEAGEKPIEGASRDALVEGLRDRGHRNVMALDGPEALPRLIAETARPGDLVVCLG 449

Query: 452 SNSC 455
           + S 
Sbjct: 450 AGSI 453


>gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 461

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 127/357 (35%), Gaps = 27/357 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    + +IAITGS GKTTT   L   L +     +  G+    +   + LA
Sbjct: 92  ISEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                  + + EL    L  +    +  R HIA++  I P HL  +   +E  A AK  I
Sbjct: 152 ----PHAYYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHQMELYARAKMRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +  E T       +D + + L  +      + I+ F    ++D  +       +  +  
Sbjct: 204 TQNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIF-FSTKASSDDAVVASSHNGQLCFAL 262

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +   + +E      G H  QN L        L    +    +L  F        R    
Sbjct: 263 QEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETFTNVP---HRLEYI 319

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      I++S   N  S   A+  + +         I +LG     G    + + DL 
Sbjct: 320 ASIDGVDYINDSKATNINSTWYALESMRK-------PTILILG-----GTDKGNDYNDLM 367

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           +++    +  ++L+      L  +    I  H    +M       +     GD V++
Sbjct: 368 DLVKEKVVGLIYLT-TDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAGDTVLL 423


>gi|312863272|ref|ZP_07723510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
 gi|311100808|gb|EFQ59013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
          Length = 450

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   K+    G+          +A+   + D
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFP---ASEVAQSVTNQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        PHIAVIT + P H+      E   +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  +++A     +  F   +  D   L       +    E+ +    
Sbjct: 219 FVILNFNQDLAKELATQTNA----QVVPFSTVEKVDGAYLENGGLYFKG---ELVMHADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  + +       + LS F   +    R +         
Sbjct: 272 ----LGVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVK---HRLQFVDTIDNVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELIPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   H  ++ +             GDVV++
Sbjct: 372 LKKMVILGESAPRVKRAADKAGVTHLDAKDVADATRIAFEQASAGDVVLL 421


>gi|301066756|ref|YP_003788779.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus casei str.
           Zhang]
 gi|300439163|gb|ADK18929.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 123/371 (33%), Gaps = 51/371 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGIPDSKFFVFEA- 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   ++G E++  A       ++K   I    D
Sbjct: 154 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYTGFEDVYDAFETEANQVKK--AIVAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DFQ R   + +  S  +     + +       
Sbjct: 208 DPWLRKLKAKV------PVYYYGISDRDDFQARNVDRDTNGSSFDAYFHDQLIGHFFVPL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 262 FGEHSVLNALAVVAVAHMEKLDAKLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +KA +    Q  P      IAV          +Q++     +VLS       +L+
Sbjct: 317 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTFSRTQAYEPQYVQVLSQ--ADQTFLT 370

Query: 408 GFHVLALKDALP----------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-G 456
                A +              +   V + E M  L  +         VVV   +     
Sbjct: 371 PIFSSAREKTGKIRSEDITAQIKGAAVIHQEDMKPLLQY------HNAVVVFMGAGDIQK 424

Query: 457 FYRLINLLLEE 467
           + +    LL E
Sbjct: 425 YEKAYETLLAE 435


>gi|70726183|ref|YP_253097.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus haemolyticus
           JCSC1435]
 gi|109892743|sp|Q4L784|MURC_STAHJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68446907|dbj|BAE04491.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 437

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 146/388 (37%), Gaps = 41/388 (10%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +       +    D+ L  +        +  + T +A+TG+ GKT+T  +L+  ++  K
Sbjct: 68  NAFPDTHEEIVKAHDLKLDVIRYHDFLGHVIDQYTSVAVTGAHGKTSTTGLLSHVMNGDK 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT   IG     +G+P +        D+  FE       E R       P  A++T I  
Sbjct: 128 KTSFLIGD-GTGMGLPAS--------DYFAFEA-----CEYRRHFLSYHPDYAIMTNIDF 173

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  I+++ASA   +   ++K   I    DD     LKA         IY +G +K
Sbjct: 174 DHPDYFKDIDDVASAFQSMAHNVKK--AIIAWGDDDHLRQLKADV------PIYYYGLNK 225

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTA 313
           N D      +   + +  +V + G+  +       G H  QN L  + I  +   DV+  
Sbjct: 226 NDDIYADNIQITDKGTQFDVYVNGEYYDQFLSPQYGDHNIQNALAVIAISYLEKMDVNNI 285

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL  F   + R      A       ++ + Y  +P  + A I    +  P+ +   +A
Sbjct: 286 KEALETFGGVKRRFNETNVANQ-----VLVDDYAHHPREISATIETARKKYPNKD--IVA 338

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V          +Q+F  + A  LS     HV+L      ++++             +DG 
Sbjct: 339 VF--QPHTFSRTQAFLDEFATSLSK--ADHVYLC-EIFGSIRENTGDLTIQDLINRIDGS 393

Query: 434 FLFIQSSLV-----DGDVVVVKSSNSCG 456
            L  ++++      D  V++   +    
Sbjct: 394 ALIEENNIDVLDQFDNAVILFMGAGDIQ 421


>gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
          Length = 522

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 165/487 (33%), Gaps = 52/487 (10%)

Query: 6   TFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  ++   + G           +   +G +I ++   P + F  + G    G  F   AV
Sbjct: 16  TLTEIAAQVPGVISVPASSDSGEVRCSGATIRAQDARPGDLFCGVPGTSTHGARFAAEAV 75

Query: 62  QKGAGLVVVNTDMVASIGS--LSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSV 117
             GA  V+ ++   A +    + +PV   DD    L      +     +K T++ ITG+ 
Sbjct: 76  AAGAVAVLTDSAGAAVLAEAGVDVPVLLHDDPRSVLGPAAAVIYGAPSTKMTLVGITGTS 135

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLTLAR-------------MPVDVD 161
           GKTTT  ++  AL + + T   IG+    I    VP +L               +   V 
Sbjct: 136 GKTTTSFLVEAALGATQATTGLIGTVGTRIAGVDVPTSLTTPEGTALQGLFASMVEQGVT 195

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L + R      R  +   T ++  HL     +E+  +AKA +F   E   
Sbjct: 196 SAVMEVSSHALAQNR--VGGTRFAVGAFTNLSQDHLDYHPTMEDYFAAKALLFVPDESGD 253

Query: 222 -----TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQ 275
                   +  DD +   +       G+  + +   +  AD+        ++ +    + 
Sbjct: 254 GPVCEQAVICVDDEWGNRMADLRRDAGL-PLVTVATTGPADWTAGAVSAHADGTQRFTLT 312

Query: 276 -LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              G+S        G +   N  + L +       +  A++           G+  R   
Sbjct: 313 GPGGQSFSATVGLPGAYNVANAALALVVAHEAGVPLADAVRG---IGAVAVPGRVQRIDR 369

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q F  ++D  Y   PA++ A I+ L   +    GR   V+G   +     +    ++A 
Sbjct: 370 GQDFLAVVD--YAHKPAALDAVIATLRGQTA---GRIAVVVGAGGDRDRGKRPLMGEVAA 424

Query: 395 VLSLYNI--------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             +   I                 V A  +A+P    V                   GDV
Sbjct: 425 RAAELVIVTDDNPRTEDPAAIRAAVRAGAEAVPGGGEVREIGDRRAAITEAVDWARTGDV 484

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 485 VLIAGKG 491


>gi|325829942|ref|ZP_08163400.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
 gi|325488109|gb|EGC90546.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
          Length = 475

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 127/382 (33%), Gaps = 38/382 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   ++  + A L      +A+ G+ GKTTT  ML   L  + +           I    
Sbjct: 91  LTIWHRAQMLAYLGRALQTLAVAGTHGKTTTSSMLASVLDGMGED---PTFLIGGIVRAY 147

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                       + E   S    +      + P   ++T I   HL ++  ++EI    A
Sbjct: 148 GTNAHSGTGAHYVVEADESDKSFMH-----LSPRAVLVTNIEADHLDHYRDLDEIYEKFA 202

Query: 212 EIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                +   G  +    +D     +   S     K ++++G S   D ++  ++     S
Sbjct: 203 SFIGSVPDDGGVVVACGEDEALVRVACAS----GKRLFTYGFSDACDVRIASYEPNGVGS 258

Query: 271 WMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              ++L   S+    V    G H   N    +G++  L  D   A +AL+ F   +   +
Sbjct: 259 DFTLELPDGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVK---R 315

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------- 381
           R+      G  T++D+ Y  +P  + A I   S +        + VL             
Sbjct: 316 RFDLVGEAGGVTVVDD-YAHHPTEIAATIEAASHLGFAH----VHVLFQPHRYSRAPLFT 370

Query: 382 ----GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGL 433
                +  ++F   D    + +Y      + G       + +          Y      +
Sbjct: 371 EVLKDDFGRAFDAADAVTFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEV 430

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
             ++   L +GD+++   +   
Sbjct: 431 VPYLAGKLGEGDLLITMGAGDV 452


>gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 144

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLT 152
               LS    T     ++NN IGVP+T
Sbjct: 118 TAAILSQCGNTLYTASNFNNDIGVPIT 144


>gi|167945041|ref|ZP_02532115.1| UDP-N-acetylmuramate--L-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 286

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 111/292 (38%), Gaps = 27/292 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E   S    +      ++P ++V+T I   H++ +    E + +A  E    L  
Sbjct: 7   DYLVAEADESDASFL-----YLQPMLSVVTNIDADHMATYGGDFERLRAAFLEFLHHLPF 61

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG- 278
            G   L  DD     L  K      + I S+G S++AD +    +Q    +   ++ +G 
Sbjct: 62  YGLAVLCIDDPEVRRLLPKV----TRRIRSYGFSEDADVRAVDVEQQGLTTRFRLECEGW 117

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  ++  +  G H   N L  + +   L  +     +AL  F     R +         
Sbjct: 118 ERGQQISLNMPGRHNVLNALAAVAVALELGVEPAAIQRALQSFQGIGRRFQTKGECRCAA 177

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+ + Y  +P  + A +  + +      GRRI VL         +Q    D  +VLS
Sbjct: 178 GQVLLVDDYGHHPREIAATLQAVHE---GWPGRRI-VLAFQPHRFSRTQEQFDDFVQVLS 233

Query: 398 LYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQ 438
             ++   + V+ +G   +   D  AL R++         + E +D L   I 
Sbjct: 234 QADVLLLTEVYAAGEAPIQGADGRALSRAVRARGQVDPVFVEPLDELPEIIA 285


>gi|331696621|ref|YP_004332860.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951310|gb|AEA25007.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 476

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 156/437 (35%), Gaps = 38/437 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++       A+      GHD     +  G   VVV+T +  +   L+      +  L
Sbjct: 41  DSRTVMA---LRALGAEVALGHDAANLDLLGGPPTVVVSTAIRETNPELAA---ARERGL 94

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVP 150
             +++    A L +   + A+ G+ GKT+T  MLT+AL    +  ++A  G         
Sbjct: 95  LVVHRADALADLTTGRRVAAVAGTHGKTSTSSMLTVALQHCRLDPSFAIGGDLAASGAGA 154

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                     D  + E   S      +      P +AV+T + P HL +    E   +  
Sbjct: 155 H-----HGGGDVFVVEADESDGSFTAY-----APEVAVVTNVEPDHLDHHGTEEAYRAVF 204

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSE 268
                 + + GT+ +  DD+    L  ++ A G+ T+  +G++     D  L        
Sbjct: 205 EAFVGRIAEKGTLVVCADDAGAAALGEQAEARGL-TVRRYGRTATGPDDAVLLDHVPDGP 263

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            + M  + +   + V     G HMA N L  L     L A VD  +  L+ F   +G  +
Sbjct: 264 GARMRARHRDAELAVRLAVPGEHMALNALAALLAGVELGAPVDGLLAGLAEF---DGVRR 320

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+          + D+ Y  +P  + A +     ++         V+     +   ++ F
Sbjct: 321 RFEFKGRAAGVAVYDD-YAHHPTEVAATLRAARSVAGPTGR---VVVAFQPHLYSRTRLF 376

Query: 389 HIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQ 438
             +            VL +Y        G     + DA+      VH+  +   +   + 
Sbjct: 377 ATEFGRALALADEVVVLDVYGAREDPEPGVTGALVADAVTLPPQVVHHVPSWSQVPAVLA 436

Query: 439 SSLVDGDVVVVKSSNSC 455
                GD+V+   +   
Sbjct: 437 RLARPGDLVLTMGAGDV 453


>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMG 18311]
 gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus CNRZ1066]
 gi|62900662|sp|Q5M0D5|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900663|sp|Q5M4Y2|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus LMG 18311]
 gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus CNRZ1066]
 gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus ND03]
          Length = 450

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   K+    G+          +A+   + D
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFP---ASEVAQSVTNQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        PHIAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            I LN++    + L  +++A     +  F   +  D   L       +    E+ +    
Sbjct: 219 FIILNFNQDLAKELATQTNA----QVVPFSTVEKVDGAYLENGGLYFKG---ELLMHADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +         + LS F   + R +         F  
Sbjct: 272 ----LGVPGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRLQ---------FVD 318

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+    N +     ++    +S     + I + G   + G        D+        
Sbjct: 319 TIDDVKFYNDSKSTNILATQKALSGFDNSKVILIAGG-LDRGNEFDELIPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  ++ +             GDVV++
Sbjct: 372 LKKMVILGESAPRVKRAADKAGVTYLDAKDVADATRIAFEQASAGDVVLL 421


>gi|325957331|ref|YP_004292743.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
 gi|325333896|gb|ADZ07804.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
          Length = 437

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 128/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGR---------GKGVPDSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ    K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D     L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L    +   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RGVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 479

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 165/455 (36%), Gaps = 67/455 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  Q  FF +KG ++   +++  A+++G    +   D       + IP   V+
Sbjct: 38  LSYDSRDVDDQTLFF-VKGANFKA-EYLQSALEQGLPAYISEVDY-----EVDIPAIIVN 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+  A++   +A     +    ++A TG+ GKTT+       L    KT A + + N  +
Sbjct: 91  DIKHAMSIIAMAFYDNPQDNLKLLAFTGTKGKTTSAYFAYHILKQSHKT-AMLSTMNTTL 149

Query: 148 GVP------------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          L L +M  +         I E+        R   + +   + V  
Sbjct: 150 DGQTFFKSQLTTPESLDLFKMMAECVSNGMTHLIMEVSSQAYLVGR--VYGLTFDVGVFL 207

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            I+P H+        E+    K  + E    +  + +N D  +F++LK +          
Sbjct: 208 NISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVIINSDMDYFKILKEQVKNQEHD--- 261

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +G++ +            +      ++ GK +       IG     N L        L 
Sbjct: 262 FYGQASDNHI--------LDSQAFTFKVTGKLAGSYKTLLIGRFNQDNALAAGLACLRLG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D   K ++        G+    +   G    +D  Y  N  S++  +SV+ +   H 
Sbjct: 314 ASSDDIRKGIA---ETTVPGRMEVLSHPCGAKVFVD--YAHNGDSLEKLVSVVEE---HQ 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSG----FHVLALKDALPR-- 420
           +G+ I ++G     G   +S   D A+V++ + N+S +  +          + + +    
Sbjct: 366 KGQIILIIGS---TGNKGESRRADFAKVINNHPNLSVILTADDPNFEDPQTISEEIASYV 422

Query: 421 SIHVHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
           S  +      +            +GD +++  K +
Sbjct: 423 SRQLTIEVDREQAIKLGLQLCQKEGDALIIAGKGA 457


>gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 475

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 127/382 (33%), Gaps = 38/382 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   ++  + A L      +A+ G+ GKTTT  ML   L  + +           I    
Sbjct: 91  LTIWHRAQMLAYLGRALQTLAVAGTHGKTTTSSMLASVLDGMGED---PTFLIGGIVRAY 147

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                       + E   S    +      + P   ++T I   HL ++  ++EI    A
Sbjct: 148 GTNAHSGTGAHYVVEADESDKSFMH-----LSPRAVLVTNIEADHLDHYRDLDEIYEKFA 202

Query: 212 EIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                +   G  +    +D     +   S     K ++++G S   D ++  ++     S
Sbjct: 203 SFIGSVPDDGGVVVACGEDEALVRVARAS----GKRLFTYGFSDACDVRIASYEPNGVGS 258

Query: 271 WMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              ++L   S+    V    G H   N    +G++  L  D   A +AL+ F   +   +
Sbjct: 259 DFTLELPDGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVK---R 315

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------- 381
           R+      G  T++D+ Y  +P  + A I   S +        + VL             
Sbjct: 316 RFDLVGEAGGVTVVDD-YAHHPTEIAATIEAASHLGFAH----VHVLFQPHRYSRAPLFT 370

Query: 382 ----GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGL 433
                +  ++F   D    + +Y      + G       + +          Y      +
Sbjct: 371 EVLKDDFGRAFDAADAVTFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEV 430

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
             ++   L +GD+++   +   
Sbjct: 431 VPYLAGKLGEGDLLITMGAGDV 452


>gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 129PT]
 gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           129PT]
          Length = 436

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 132/347 (38%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   IIAITGS GK+T   +++             G+          L  +  D D  
Sbjct: 102 RHANKPIIAITGSNGKSTVTTLVSEMAKEDGLKVGMGGNIGIP-----ALELLQQDYDIY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A I  I+  H+  +  IE+   AK  I+E  ++    
Sbjct: 157 VLELSSFQL----ETTYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQR---A 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D         +    +K+  +FG+S+ AD+ L+            +  +   +  
Sbjct: 210 VINAEDVL-------TTTEDLKSPITFGESQ-ADYWLK----TENGKQYLMAKERLILPC 257

Query: 284 -VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L    +V  +         AL  F    G   R++ A  +     I
Sbjct: 258 DEMKLVGRHNYMNALAASALVQAVDISFTAIRTALRKFT---GLAHRFQLAYQKDDVRWI 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L     +   +   +LG   +  + S     +LA +++  +I 
Sbjct: 315 NDSKATNVGSTVAALTGL-----YVANKLHLLLGGDGKSADFS-----ELATLINQPHI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +  G     L      S+     +TM+     I+ +L  GD+V++
Sbjct: 364 YCYCFGQDGKELAAL---SVQSQLFDTMEQAIEAIRPNLQQGDMVLL 407


>gi|299822723|ref|ZP_07054609.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
 gi|299816252|gb|EFI83490.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
          Length = 440

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 138/423 (32%), Gaps = 59/423 (13%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F    +QKG  ++  N         +     G    L  +       +     T IAITG
Sbjct: 53  FSAENIQKGQTIIAGNAFPDTHEEIVKAKELG----LTVIRYHKFLGQFIENYTSIAITG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT+T  +L+  L  IK T   IG                   ++   E        +
Sbjct: 109 SHGKTSTTGLLSHVLEGIKPTSYLIGDG---------TGSGTKGAEYFALEACEYQRHFL 159

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +      P  A++T I   H   F  ++++  A   +   ++K   +    DD     L
Sbjct: 160 AY-----SPTYAIMTNIDWDHPDYFKSVDDVFDAFQTMGSQVKK--AVIALGDDEQLRRL 212

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQ 294
                      I  FG  +N +F  +   + +  +  +      K         G H   
Sbjct: 213 DLDI------PIVYFGFGENNEFIAKNVIKKTTGTVFDAYHFDQKLGTFEIPTYGDHNVM 266

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +       + + I+ L  F   +    R      +G   L+D+ Y  +P+ ++
Sbjct: 267 NALSVIALTDYEGLPMKSVIEGLKTFEGVK----RRFSISEKGNQVLVDD-YAHHPSEIR 321

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------- 407
           A I+   Q   + + + +AV          +Q+F    AE L+L     V+L        
Sbjct: 322 ATINAARQ--KYPDKKVVAVF--QPHTFTRTQTFLQGFAESLNL--ADEVYLCDIFGSAR 375

Query: 408 ---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYR 459
              G   +    A  +  H+      + L  +         V++   +         + +
Sbjct: 376 EKTGKLTIGDLAAKTKGNHIIKEAHTEELLRY------PEAVILFMGAGDVQKFQAAYEK 429

Query: 460 LIN 462
           ++ 
Sbjct: 430 VLE 432


>gi|27468331|ref|NP_764968.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57867174|ref|YP_188872.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           RP62A]
 gi|33301388|sp|Q8CS47|MURC_STAES RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68565678|sp|Q5HNG9|MURC_STAEQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27315877|gb|AAO05012.1|AE016748_246 UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57637832|gb|AAW54620.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis
           RP62A]
          Length = 437

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 132/374 (35%), Gaps = 54/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE
Sbjct: 100 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++  A   +   ++K   I   
Sbjct: 151 A-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  +    
Sbjct: 204 GDDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQFLS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I  +   +V+   +AL  F   + R    + +       +I + 
Sbjct: 258 PQYGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVSNQ-----VIVDD 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P  +   +AV          +Q+F  + AE LS      V+
Sbjct: 313 YAHHPREISATIETARKKYPQKD--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADQVF 366

Query: 406 LSGFHVLALKDALPRSIHVHYSETM-----------DGLFLFIQSSLVDGDVVVVKSSNS 454
           L       +  ++  +      E +           +     ++    D  V++   +  
Sbjct: 367 LC-----EIFGSIRENTGDLTIEDLINRIDGSTLIDENSIDVLEK--FDNAVILFMGAGD 419

Query: 455 CGFYRLINLLLEEF 468
               +L+    E+ 
Sbjct: 420 IQ--KLLKAYFEKL 431


>gi|262373951|ref|ZP_06067228.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
 gi|262310962|gb|EEY92049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
          Length = 452

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 141/394 (35%), Gaps = 56/394 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+ KG                  IPV G   +L          R  + A IIAITGS
Sbjct: 82  IQQAIDKG------------------IPVVGDIQLL----------RRATDAPIIAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   ++ +      K  A  G+        L L +   ++   + EL    L    
Sbjct: 114 NAKSTVTTLVGLMAQDAGKKVAVGGNLGRP---ALDLLKDKPELI--VLELSSFQL---- 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T  +   +AV+  ++  HL     +     AK  IF+G++K   +  N DD+    L 
Sbjct: 165 ETTSHLNAEVAVVLNMSEDHLDRHGDMLGYHKAKHRIFQGVKK---VVYNRDDNLSRPLV 221

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
             +  +      SFG +   D       + ++ +    + + + ++     I G H   N
Sbjct: 222 PDATPMQ-----SFGLNA-PDLNQYGVLRDADGTMWLARGRERILKTSEMYIQGMHNVAN 275

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L I   +   + + ++ L  F   E R +  +           ++S   N  +  A
Sbjct: 276 ALACLAIGEAVGFPLPSMLETLKTFKGLEHRCEYVQTI---DGVRYYNDSKGTNVGATLA 332

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI  L       +G+   +LG   + G+  +     + + +       V L G     ++
Sbjct: 333 AIDGLGAAIEVNKGKLALILGGQGK-GQDFRPLRNAIQKYVKS-----VILIGEDAPVIE 386

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            A+  +  + ++ ++       Q      DVV++
Sbjct: 387 QAIQGTTVIQHASSLKAAVELAQQVTQAEDVVLL 420


>gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
          Length = 518

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 155/439 (35%), Gaps = 61/439 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            G +  ++ +S  + P    F IKG ++   +++  A++KG   ++       +     +
Sbjct: 35  DGEIQHLAYNSNDVVPGTLLF-IKG-NFKA-EYLTDAIEKGVTAIIAPASFKHA---TKL 88

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-------SIK 134
           P +  DDV  A++   +A     ++   +I ITG+ GKT+T  M    L        ++ 
Sbjct: 89  PTWVADDVPAAMSIIAMAFYQYPQNNLALIGITGTKGKTSTAYMAYEILRAYTHDKVALS 148

Query: 135 KTYACIGSYNNHIGVPLTLAR---------MPVDVDFGIFELGM---SHLGEIRFLTHLV 182
            T   I            L           M   VD G+  + M   S   ++R   + +
Sbjct: 149 STLQVITGSEPQYHYRAHLTTPESVDLFRWMREAVDNGMTHMVMEVSSQAFKMRR-VYGL 207

Query: 183 RPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             ++ +   I+P H+        E+    K  +F+  E+   I LN D   F  L A + 
Sbjct: 208 HFNVGIFLNISPDHIGENEHPTFEDYLQHKMMLFDHSEQ---IVLNVDSDHFGELIAHAE 264

Query: 241 ALGIKT-IYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGI 288
            +  +  I+ +G+    S  AD            S  +V+  G+  E +H          
Sbjct: 265 LMVHRDGIWLYGQEDVDSPKADVYFEATDANLHGSVFKVREVGQQAEHLHIKGEYTLDMP 324

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    ++ AD     +        +  G+       +     +D  Y  
Sbjct: 325 GDFNQSNALAAMIATRLVGADAPAMAEG---LETVKVPGRMQVLNTQKHGTIYVD--YAH 379

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS+ A +  + Q       +   V+G     G    S    + + +S      V+L+ 
Sbjct: 380 NYASIAALLQFVRQ--NESVNQLAIVVGAP---GNKGVSRRPGIGKAVSE-GADVVYLTS 433

Query: 409 -----FHVLALKDALPRSI 422
                     + D +  +I
Sbjct: 434 DDPQYEDPAKIADEIQAAI 452


>gi|257125003|ref|YP_003163117.1| UDP-N-acetylmuramate/alanine ligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048942|gb|ACV38126.1| UDP-N-acetylmuramate/alanine ligase [Leptotrichia buccalis
           C-1013-b]
          Length = 449

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 150/428 (35%), Gaps = 50/428 (11%)

Query: 56  FILHAVQ----KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           +I    +    KG  L V +T +  +        + VD+ +  + +  + A + ++   I
Sbjct: 54  YIGQVEENVKDKGIDLFVYSTAIKETNPEYK---YIVDNNIKKIKRGELLAEIMNRFDGI 110

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKTTT  M+++AL   +  +  +G     I           +   G  E  ++ 
Sbjct: 111 AVAGTHGKTTTSSMMSVALLEKEP-FIVVGGIIPEIQS---------NSQIGNSEYFIAE 160

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E       ++P  +V+T I   HL +    E I  +  +  +  E+     L  D   
Sbjct: 161 ADESDNSFLYIKPKYSVVTNIEADHLDHHGTFENIKKSFEQFIDSTER--IAVLCKD--- 215

Query: 232 FELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
              ++     +  K +  +  K + AD   +  +  +  +  EV   G+ +        G
Sbjct: 216 --TVEKVGLDIKNKNVVWYSLKDETADIYAKNIRVENGITSYEVVKNGEELGTFSLSVPG 273

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +        ++    + +  F   +G  +RY+   +      I + Y  +
Sbjct: 274 NHNVSNSLPVIYFAHEFNCNMKKVKERILKF---KGANRRYQVIYDNN--LRIIDDYAHH 328

Query: 350 PASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P  +K  I+               PH   R      D  +  + +         +L +Y 
Sbjct: 329 PTEVKVTINAAHNTEKGKVTVIFQPHRYSRTKFFFDDFVKSLKEADDL-----ILLPIYA 383

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--FY 458
            S     G    +L + +  ++ V    T + +   I++     +  V   + S     +
Sbjct: 384 ASEDNTYGVSSESLAEKIGGNVRVQ---TQEEIKNIIKNDKNSKNTYVFMGAGSVSKIAH 440

Query: 459 RLINLLLE 466
            + N L E
Sbjct: 441 EIANDLKE 448


>gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TX1467]
          Length = 511

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 159/466 (34%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+  L++A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSIAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQITALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0027]
          Length = 514

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQH 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|330684044|gb|EGG95800.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU121]
          Length = 437

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 135/376 (35%), Gaps = 50/376 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +        + ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG          
Sbjct: 85  LDVIRYHDFLGHVINQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG-------- 136

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D+  FE       E R       P  A++T I   H   F  +E++  A  
Sbjct: 137 -TGMGLPGSDYFAFEA-----CEYRRHFLSYDPDYAIMTNIDFDHPDYFKDVEDVFDAFQ 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+   ++K   I    DD +   L+A         IY +G ++  D   +  +   + S 
Sbjct: 191 EMAHNVKK--AIIAWGDDEYLRKLEADV------PIYYYGFNETDDVYAKNIQITEQGSQ 242

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V + G+          G H   N L  + I  +   ++D   +AL  F   + R    
Sbjct: 243 FDVYINGEFYGQFLSPQYGDHNILNTLAVVTISYLEKMNIDNIKEALETFGGVKRRFNET 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + +       ++ + Y  +P  + A I    +  P  E   IAV          +Q+F  
Sbjct: 303 KVSNQ-----VLVDDYAHHPREINATIETARKKYPQKE--VIAVF--QPHTFSRTQAFLE 353

Query: 391 DLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           + A  LS     HV+L           G   L ++D + R       +  +     ++  
Sbjct: 354 EFATSLS--AADHVFLCEIFGSIRENTGE--LTIQDLINRIDGSALID--ESGIDVLEK- 406

Query: 441 LVDGDVVVVKSSNSCG 456
             D  V++   +    
Sbjct: 407 -FDNAVILFMGAGDIQ 421


>gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 452

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 136/377 (36%), Gaps = 51/377 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +        L  K T +AITGS GKT+T  +++  L S+K T   IG          
Sbjct: 88  LTVIRYHYFLGELIKKYTSVAITGSHGKTSTTGLMSHVLGSLKTTSYLIGDG-------- 139

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   D ++ + E       E R       P  A+ T I   H   +  IEE+ +A  
Sbjct: 140 -TGKGVEDGEYFVLEA-----DEYREHFLAYEPDYAIFTNIDFDHPDFYHNIEEVFAANR 193

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQS 270
           +    ++    +    DD + + LK +        ++ +G   +  D   +   + ++ S
Sbjct: 194 KFAHQVKNK--VIAYGDDPYLQKLKDEVD------VWYYGIDNDDFDIVAKDIVRNTKGS 245

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +V +QGK       H  G H   N L  +G   +   D +   +AL+ F   + R   
Sbjct: 246 HFDVWVQGKHYGNFSIHTFGQHSILNSLAVIGFCYLEGFDPEDVQEALTSFKGVKRRFNE 305

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379
                      +I + Y  +P+ +KA I    Q            PH   R +A+L    
Sbjct: 306 RFVEDM-----VIVDDYAHHPSEIKATIDAARQQYPDKAVISVFQPHTYSRTLALLDQFA 360

Query: 380 EMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           E  + S  +F  D+    S     H      H ++ +D L R    H +  +  +   + 
Sbjct: 361 EALDKSDAAFVCDI--FASARETDH------HQVSSQDVLDRLTVPHAALDLGDMTSLLA 412

Query: 439 SSLVDGDVVVVKSSNSC 455
                  V++   +   
Sbjct: 413 ---YKDAVILFMGAGDV 426


>gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 550

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/485 (17%), Positives = 158/485 (32%), Gaps = 56/485 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + +AI     G      V GIS++SR++   + + A+ G    G DF   A++ GA 
Sbjct: 37  LDSIGEAIGVVVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAA 96

Query: 67  LVVVNTDMVASIG---SLSIPVFGV---DDVLGALNKLAVAARLRSKATI--IAITGSVG 118
            ++ +      +      ++PV  V    +V+G L+ +   +       +    +TG+ G
Sbjct: 97  AILTDDAGARLLALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNG 156

Query: 119 KTTTKEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLARMPVDV-----------DF 162
           KTTT   +T  L S+ K    IG+       + +   LT    P                
Sbjct: 157 KTTTTYFITSLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTA 216

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    +   R     V   +A  T +   HL     +E+  + KAE+F        
Sbjct: 217 AAMEVSSHAISYQR--VDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFTPARARK- 273

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKS 280
             +  DD +   L   +       + +   S     D+ + +       +   ++  G +
Sbjct: 274 AVVTVDDEWGRRLAGAAAV----PVITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGT 329

Query: 281 MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGF 338
              VH G  G     N  +   +V     D  T   A  +          R +    Q  
Sbjct: 330 RLRVHTGLPGTFNVANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLVSEQPA 389

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS- 397
             +    +  N  ++  A+  +    P    R I V G   +  +  +     +A  L+ 
Sbjct: 390 AVV---DFAHNTDALARALEAVRS--PEPGSRLIVVFGATGQRDQGKRPAMGAIAARLAD 444

Query: 398 -------------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                           I    L+G      +D+LP  +   +    D             
Sbjct: 445 TVIVTDDDPHDEDAAAIRADVLAGAREAKARDSLPCILEEVFP--RDKAIQRAVELARPE 502

Query: 445 DVVVV 449
           D ++V
Sbjct: 503 DTILV 507


>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
 gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
          Length = 445

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 121/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQRESKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L  +          +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQNL-------LFVILGGMGKGQDFTP------LRTALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|322517040|ref|ZP_08069927.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124387|gb|EFX95889.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
          Length = 450

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   K+    G+          +A+   + D
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNYGGKSGVLSGNIGFP---ASEVAQSVTNQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        PHIAVIT + P H+      E   +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  +++A     +  F   +  D   L       +    E+ +    
Sbjct: 219 FVILNFNQDLAKELATQTNA----QVVPFSTVEKVDGAYLENGGLYFKG---ELVMHADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  + +       + LS F   +    R +         
Sbjct: 272 ----LGVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVK---HRLQFVDTIDNVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELIPDII------G 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  R+   H  ++ +             GDVV++
Sbjct: 372 LKKMVILGESAPRVKRAADRAGVTHLDAKDVADATRIAFEQASAGDVVLL 421


>gi|239502056|ref|ZP_04661366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB900]
          Length = 448

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +   +    
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYAKV---- 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 375 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|169634628|ref|YP_001708364.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii SDF]
 gi|260556380|ref|ZP_05828599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
 gi|169153420|emb|CAP02557.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii]
 gi|260410435|gb|EEX03734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
          Length = 455

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 162 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 215 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +   +    
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYAKV---- 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 382 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
 gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
          Length = 506

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQH 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 506

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 156/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V       G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
 gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
          Length = 484

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 124/343 (36%), Gaps = 25/343 (7%)

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
             ++    V   L     +   G  E  ++   E         P +AV+T I   HL  F
Sbjct: 140 CGFDPSFAVGGDLGEAGTNAHHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFF 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-- 258
              E   +      E L   G +    DD     L  ++ ALG++ +  +G +   D   
Sbjct: 200 GSAEAYTAVFDAFVERLTPGGALIACVDDPGSAALAERTAALGVR-VLRYGSAGGRDLAG 258

Query: 259 QLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            L  W+Q    +   +QL G+S    +     G HMA N L  L     + AD DT +  
Sbjct: 259 ALVGWEQQGTGAVAHIQLAGESAPRAMRLSVPGRHMALNALGALLAALQVGADPDTVLDG 318

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-GRRIAVL 375
           L+ F   EG  +R+          + D+ Y  +P  + A ++ L  ++     GR + V 
Sbjct: 319 LAGF---EGVRRRFELVGTATGVRVFDD-YAHHPTEVAATLAALRAVTDQAGDGRAVVVF 374

Query: 376 GDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
                +   +++F  +            VL +Y      ++G    ++ + +   + V Y
Sbjct: 375 --QPHLYSRTETFAREFGAALSAADLVFVLDVYGAREQPIAGVSGASIVEHV--GVPVTY 430

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
                 +   +  ++  GDVVV   +         +I  L   
Sbjct: 431 VPDFSAVAAQVAGAVRPGDVVVTMGAGDVTMLGPEIIAALQAR 473


>gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI18]
 gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA6140]
 gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA19]
 gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID332]
 gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-92-679]
 gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 445

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 143/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +   L R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDDLLDYAHTKAKIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +   C +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKRFSLEHEADFWLERGTGCLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 ISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|222151664|ref|YP_002560820.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
 gi|254766009|sp|B9E7F6|MURC_MACCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222120789|dbj|BAH18124.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
          Length = 431

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 118/311 (37%), Gaps = 34/311 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   S+ T +A+TGS GKT+T  +L+  ++  KKT   IG     +G+P +     
Sbjct: 91  HDFLGNFMSQYTSVAVTGSHGKTSTTGLLSHVMNGDKKTSYLIGD-GTGMGMPGS----- 144

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                   E       E R       P  A+IT I   H   F+ + ++ +A  E+ + +
Sbjct: 145 --------EYFAFEACEYRRHFLSYSPDYAIITNIDFDHPDYFASMSDVFNAFQEMTKKV 196

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   I    DD     ++A         IY +G  ++     +  K   + +  EV + 
Sbjct: 197 KK--AIVACGDDENLRDIEADI------PIYYYGFKEDNKVVAKNMKTTPQGTQFEVYID 248

Query: 278 GKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+  +  V    G H   N L  + I  +   D      ALS F   +    R      Q
Sbjct: 249 GELFDTFVTPMYGDHQVLNALAVITICHLEGLDNAAVKHALSTFGGVK----RRFSEKIQ 304

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LID+ Y  +P  +KA +   S    + E + IA+          + +F  D A  L
Sbjct: 305 DEQILIDD-YAHHPTEIKATLQ--SAHLKYPERKVIAIF--QPHTFSRTSAFLEDFANSL 359

Query: 397 SLYNISHVWLS 407
            L     V+L 
Sbjct: 360 KL--ADKVYLC 368


>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMD-9]
 gi|122267801|sp|Q03L98|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus LMD-9]
          Length = 450

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   K+    G+          +A+   + D
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFP---ASEVAQSVTNQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        PHIAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            I LN++    + L  +++A     +  F   +  D   L       +    E+ +    
Sbjct: 219 FIILNFNQDLAKELATQTNA----QVVPFSTVEKVDGAYLENGGLYFKG---ELLMHADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +         + LS F   + R +         F  
Sbjct: 272 ----LGVPGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRLQ---------FVD 318

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+    N +     ++    +S     + I + G   + G        D+        
Sbjct: 319 TIDDVKFYNDSKSTNILATQKALSGFDNSKVILIAGG-LDRGNEFDELIPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  ++ +             GDVV++
Sbjct: 372 LKKMVILGESAPRVKRAADKTGVTYLDAKDVADATRIAFEQASAGDVVLL 421


>gi|182420067|ref|ZP_02951301.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237669521|ref|ZP_04529501.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376104|gb|EDT73691.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237654965|gb|EEP52525.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 461

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 145/438 (33%), Gaps = 51/438 (11%)

Query: 48  GPHYDGHDF-----ILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALN 96
           G    G DF     +     +GA + +      +  D+   + + +IP    + +     
Sbjct: 34  GFKVSGSDFKDSPIVEKLRAEGAEIYIGHNKDNIKKDVDLVVYTAAIPSDNPEILAAKDQ 93

Query: 97  KLAVAARLRSKATI-------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            + +  R      I       +A++G+ GKTT   ML+              + +  I V
Sbjct: 94  NILLMDRAEFLGHIMKGHKYNVAVSGTHGKTTCTSMLSHVT--------LAANLDPTILV 145

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L  +  +   G  E  ++   E +       P++ +I  I   HL  +  I EIA  
Sbjct: 146 GGELDVIGGNFRIGNSEYFLTEACEYKKSFLKFPPYVGIILNIDADHLDCYKDINEIADT 205

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                + + K G +    DD   + + + +         S+G + ++D   +        
Sbjct: 206 FMAFSKLIPKDGYLVGYGDDERVKEILSNAEC----NTVSYGFNDDSDVTAKNITFNKMG 261

Query: 270 -SWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +  +V    K    +  +  G H   N L ++ +  I           +      +G  
Sbjct: 262 CASFDVYKSDKKLFSLTLNVPGKHNVLNALASICVSLIFNIADKD---TVEGLSKCKGAH 318

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDM 378
           KR+         T+ID+ Y  +P  +KA ++   +           PH   R   +  + 
Sbjct: 319 KRFEYKGELNGVTVIDD-YAHHPTEIKATLNTAQKIDHNKVYCVFQPHTYTRTKTLFDEF 377

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFI 437
                           ++ +Y              L +A+    ++     + D    ++
Sbjct: 378 THCFNECDEL-----ILMDIYAAREKDTGLVSSEELGNAIRSTGVNCTNVHSHDEALEYV 432

Query: 438 QSSLVDGDVVVVKSSNSC 455
           +S L DGD+++   +   
Sbjct: 433 KSKLGDGDLLLTVGAGDV 450


>gi|16803645|ref|NP_465130.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           EGD-e]
 gi|224501453|ref|ZP_03669760.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           R2-561]
 gi|24212042|sp|Q8Y6S8|MURC_LISMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16411034|emb|CAC99683.1| murC [Listeria monocytogenes EGD-e]
          Length = 447

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 133/370 (35%), Gaps = 55/370 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IAITGS GKT+T  +L+  + +I+ T   IG                 D ++   E  
Sbjct: 102 TSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKDAEYFALEAC 152

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 + +     +P  A++T I   H   F  ++++ +A   + + ++K        D
Sbjct: 153 EYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL--GD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHG 287
           D+    L           I  FG  +  +FQ +   + +  +  +V  + + +       
Sbjct: 206 DAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPA 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +       V+     L  F   +    R      +G   L+D+ Y 
Sbjct: 260 YGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVK----RRFSITEKGNQVLVDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     V+L 
Sbjct: 315 HHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADEVYLC 368

Query: 408 ----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-- 455
                     G   +A      +  H+   E  + L  +         V++   +     
Sbjct: 369 DIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAGDVQK 422

Query: 456 ---GFYRLIN 462
               + ++++
Sbjct: 423 FQAAYEKVLD 432


>gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
 gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 499

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 133/385 (34%), Gaps = 28/385 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A +  ++ ++A+ G+ GK+TT  M+++    +    +      
Sbjct: 105 VAARAQGLRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQLGAQPSFAVGTV 164

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                              + E   S    +R+     RP IAV+T + P HL  +   E
Sbjct: 165 IAGRGMNAHLGAQGPGSIFVAEADESDGSFVRY-----RPAIAVVTNVEPDHLDFYETDE 219

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  A       L   G +    DD+    L A+S A G+  + ++G+S +AD ++ +  
Sbjct: 220 RVFEAFNRFVGSLAPNGVVVTCADDAGAADLAARSRAAGV-PVVTYGESADADLRISEIT 278

Query: 265 QCSEQSWME---------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                S            V+ +G+  ++     G H   N         I   +     +
Sbjct: 279 SAGSSSSSHLSWSFECHGVRYEGEQ-DLALKVPGIHNQLNASAAFASALISGYEAADIAR 337

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+ F    G  +R+          + D+ Y  +P  +  A+     ++       I   
Sbjct: 338 ALAEFV---GADRRFTLRGEVAGVKVFDD-YAHHPTEVFRALETGRTVADGHNLYVIFQP 393

Query: 376 GDMCEMGELSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                  E ++ F   L     A VL +Y    + + G     +  A    +      T 
Sbjct: 394 HLFSRTREFAKEFAQALSMADRAHVLDIYPARELPIEGVTSELITGAGFSEVR---YATA 450

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
           +     I +   DGD+V+   +   
Sbjct: 451 EDAIEDIVTCAQDGDIVMTVGAGDV 475


>gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID1]
 gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
 gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
          Length = 445

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 143/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +   L R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP  A +  I+  HL  +  + + A  KAEIF G   
Sbjct: 161 ADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDDLLDYAHTKAEIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +   C +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKRFSLEHEADFWLERGTGCLKQGNEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 ISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2141]
          Length = 511

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 156/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V       G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
 gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
          Length = 481

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 170/495 (34%), Gaps = 72/495 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QG+          + I  DSR    +  FF +KG  +   +F++ A+ +G G
Sbjct: 17  FREIID--QGYYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFKK-EFLISAISQGLG 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IP   V D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAFTGTKGKTTAAY 127

Query: 125 MLTIALSS--------------IKKT-YACIGSYNNHIGVPLTLARM-PVDVDFGIFELG 168
                LS                 KT +    +    I +   + +    D    I E+ 
Sbjct: 128 FAYNILSQEHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEVS 187

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  R   + +   + V   I+P H+        E+    K  + E    +  + +N
Sbjct: 188 SQAYLVKR--VYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIIN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVV 284
            D   F +LK +               ++ DF   +     E S        GK + +  
Sbjct: 243 SDMDHFSVLKEQVA------------DQDHDFYGSQSNNQIENSKAFSFSATGKLAGDYD 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG+   +N +        L A ++   K ++        G+        G    ID 
Sbjct: 291 IQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID- 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V
Sbjct: 347 -YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSSNS 454
           +L+         +A+ D +   I+  V              +      D V++  K ++ 
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADC 459

Query: 455 CGFYRLINLLLEEFP 469
              Y+++    E +P
Sbjct: 460 ---YQIVQGKKEVYP 471


>gi|282875841|ref|ZP_06284708.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           SK135]
 gi|281294866|gb|EFA87393.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           SK135]
 gi|329737161|gb|EGG73415.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU028]
          Length = 437

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 132/374 (35%), Gaps = 54/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE
Sbjct: 100 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++  A   +   ++K   I   
Sbjct: 151 A-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD +   L           +Y +G  +  D   +  +   + +  +V ++G+  +    
Sbjct: 204 GDDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQFLS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I  +   +V+   +AL  F   + R    + +       ++ + 
Sbjct: 258 PQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ-----VLVDD 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P  +   +AV          +Q+F  + AE LS      V+
Sbjct: 313 YAHHPREISATIETARKKYPKKD--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADQVF 366

Query: 406 LSGFHVLALKDALPRSIHVHYSETM-----------DGLFLFIQSSLVDGDVVVVKSSNS 454
           L       +  ++  +      E +           +     ++    D  V++   +  
Sbjct: 367 LC-----EIFGSIRENTGDLTIEDLINRIDGSTLIDENSIDVLEK--FDNAVILFMGAGD 419

Query: 455 CGFYRLINLLLEEF 468
               +L+    E+ 
Sbjct: 420 IQ--KLLKAYFEKL 431


>gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
 gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
          Length = 471

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 158/413 (38%), Gaps = 31/413 (7%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD   H    GAG  +V +  V +     +     +  +  L++    A L +    +A
Sbjct: 66  GHD-PAHLGDLGAGDTLVVSSAVRATNPELLA--ARERGVRVLHRSEALAALMAGRAGVA 122

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  ML +AL++     +        IG  LT        D     +  +  
Sbjct: 123 VAGTHGKTTTSSMLAVALTAAGLDPSYA------IGGELTGGDDGGARDGSGPFVAEADE 176

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +  F  +   P + V+T + P HL ++   E  A+A  E  + L+  G +    DD   
Sbjct: 177 SDGSFRAYA--PVVDVVTNVEPDHLDHYGTAEAFAAAFEEFVDRLQPGGLLVACADDPGS 234

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             L   +   G++ + ++G S  AD +LR  +  +  S + V   G   E+     G H 
Sbjct: 235 AALAGHARGRGVR-VRTYGASATADVRLRDLQPGAAASAVLVD-GGVPRELRLAVPGEHN 292

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N          L AD    ++ L+ F    G  +R+          ++D+ Y  +P  
Sbjct: 293 VLNAAAAYCAAVELGADPVAVLEGLARFG---GARRRFELKGEAAGVRVVDD-YAHHPTE 348

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF 409
           ++A +     ++  G    +        +   +++F  +    L+L +   +  V+++  
Sbjct: 349 VEALLRAARPVAGGGRVVVVF----QPHLVSRTRAFAAEFGRALALADEVVVLDVYVARE 404

Query: 410 HV------LALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                     + DA+P  +  V +          + +++  GD+++   +   
Sbjct: 405 DPDPEVTGALVADAVPLPAGRVRFLPDRSAAAGTLAATVRAGDLLLTVGAGDV 457


>gi|110597720|ref|ZP_01386004.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
 gi|110340627|gb|EAT59107.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
          Length = 476

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 139/384 (36%), Gaps = 37/384 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K T I + G+ GKTTT  ++   L          G     I    ++   P       F 
Sbjct: 104 KNTSIVVAGTHGKTTTTSLVAWLLEHGGLK---PGFLVGGIPENFSMGCRPSGRIEAGFF 160

Query: 167 LGMSHLGEIRFLTH-----LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +      +  F        L RP IA+I  I   H   FS +E+I  +       + + G
Sbjct: 161 VSEGDEYDTAFFDKRSKFLLYRPDIAIINNIEFDHADIFSSLEDIKRSFRLFVNLIPRNG 220

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-S 280
           T+ +N DD     + +K+       +  FG   +A++  R      E S  ++  +G+  
Sbjct: 221 TLIVNSDDPTAMEIASKAFC----RVERFGLKTDAEWSARNISVAHETSTFDLFYKGELQ 276

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G +   N L             +   KA+ +F   + R +        G  T
Sbjct: 277 GSITVPLFGNYNIMNALAATAAAVTAGLPFEAIAKAMPLFLRPKRRMEI--IGTYPGNIT 334

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LI++ +  +P +++  +  ++++     GRR+    +          F  +L+E     +
Sbjct: 335 LIED-FAHHPTAIRVTLEAIAEL---YSGRRVVTCFEPRSNTTTRNIFQQELSECFGPAS 390

Query: 401 I----------SHVWLSGFHVLALKDALPRSIHVHYSET------MDGLFLFIQSSLVDG 444
           I           +      +   L++ L +     +          D +  F++  + D 
Sbjct: 391 IVVMGKVHRPDRYKPEECLNTSLLREELQKQGKTVFLSGEEPGAYPDNIVHFLKQQIRDD 450

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
           DVVVV  SN   F  L N+L E F
Sbjct: 451 DVVVVL-SNG-NFGNLKNMLKESF 472


>gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 297

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 27/280 (9%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++F          +N DD F   L A      
Sbjct: 1   FDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-PDLKCRVINLDDDFGRELAAVKQES- 58

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + ++ +    A    R  K   +     +        +    +G     N+L  +G 
Sbjct: 59  --RLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGA 116

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L   +D  +KAL       GR +R           L+   Y   P +++  +  L  
Sbjct: 117 LLGLDYALDEILKALPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR- 171

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413
             PH +GR + + G   +     +    ++ E L+      VW++  +  +         
Sbjct: 172 --PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSESPVSIFDD 225

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     +  V + E        + +S    DVVV+  K 
Sbjct: 226 IRPGFVAADKVRFIEGRGQAIAELIASANANDVVVLAGKG 265


>gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
 gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
          Length = 450

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   K+    G+          +A+     D
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFP---ASEVAQSVTAQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        PHIAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGID----SFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNQMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  ++ A     +  F   +  D   L       +    E+ +Q   
Sbjct: 219 FVVLNFNQDLAKELATQTKA----QVVPFSTVEKVDGAYLENGGLYFKG---ELVMQADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +         + L+ F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLSGISNQAIKETLASFGGVK---HRLQFVDTIDEVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELIPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  ++ +             GDVV++
Sbjct: 372 LKKMVILGESAPRVKRAADKAGVTYLDAKDVADATRIAFDQASAGDVVLL 421


>gi|225868966|ref|YP_002744914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702242|emb|CAW99994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 457

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 122/351 (34%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   ++    G+          +A+     D
Sbjct: 110 AYLVSEAPIIGITGSNGKTTTTTMIADVLNVGDQSALLAGNIGFP---ASEVAQAATAKD 166

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   +PHIAVIT + P HL      E+  +AK  I   +    
Sbjct: 167 ILVMELSSFQLLG----TEQFQPHIAVITNLVPTHLDYHGSFEDYIAAKWRIQHRMTGKD 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGK 279
            + LN D    + L  K+ A  +     F   +  D  +    +    E+  M       
Sbjct: 223 YLVLNADQELVKSLAQKTKASPV----FFSTKEKVDGAYLADGYLYFKEERLMSA----- 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +         + LS F   +    R +        
Sbjct: 274 ---AELGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVK---HRLQLVGTLNQV 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S + N  + + A+S           R I + G   + G        DL       
Sbjct: 328 TFYNDSKSTNILACQKALSGFD------NSRVILIAGG-LDRGNEFDELVPDLV------ 374

Query: 400 NISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     +K A     +    ++ +             GD++++
Sbjct: 375 GLKKMILLGESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|294501560|ref|YP_003565260.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|295706908|ref|YP_003599983.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
 gi|294351497|gb|ADE71826.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|294804567|gb|ADF41633.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
          Length = 433

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/430 (20%), Positives = 146/430 (33%), Gaps = 65/430 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--------KLAVAARL--- 104
           F   A+++    V+         G   I      D    +         KL    R    
Sbjct: 38  FTQKALEQQGIPVLPFDKNNIKDGMTVIAGNAFPDTHEEIAEAASKEGVKLVRYHRFLGD 97

Query: 105 -RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              + T +A+TG+ GKT+T  ML   +   + T   IG             +   D  + 
Sbjct: 98  FMKQYTSVAVTGAHGKTSTTGMLAHVIQGAEPTSYLIGDG---------TGKGVKDSKYF 148

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            FE       E R       P  A++T I   H   F+ I+++ SA  E+   ++K   I
Sbjct: 149 AFEA-----CEYRRHFLSYTPDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQVKKG--I 201

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
               DD   + ++AK        +  +G  +  DFQ R   + +  +  +V ++      
Sbjct: 202 IACGDDEHLQQIQAKV------PVLYYGLGEENDFQARNIVKSTTGTTFDVFVRNTFHAS 255

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               G G H   N L  + +      DV    +    +   +    R     N G   LI
Sbjct: 256 FEIPGYGDHNILNALSVIALCHYEEIDVAVLQERFKTYQGVK----RRFSEKNVGKQVLI 311

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+ Y  +P  + A IS   Q  P+ E   +AV          +Q+F  D A   SL +  
Sbjct: 312 DD-YAHHPTEINATISAARQKYPNRE--VVAVF--QPHTFTRTQTFLEDFA--ASLQHAD 364

Query: 403 HVWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KS 451
            V+L           G   +    +      +   ET++ L           + V+V   
Sbjct: 365 KVYLCDIFGSAREHQGKLSIEDLRSKISGAELINEETIESLKDH-------NEAVLVFMG 417

Query: 452 SNSC-GFYRL 460
           +     F +L
Sbjct: 418 AGDIQKFEKL 427


>gi|258542971|ref|YP_003188404.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634049|dbj|BAI00025.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637109|dbj|BAI03078.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640161|dbj|BAI06123.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643218|dbj|BAI09173.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646273|dbj|BAI12221.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649326|dbj|BAI15267.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652312|dbj|BAI18246.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655370|dbj|BAI21297.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 477

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 137/405 (33%), Gaps = 47/405 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   V +  +  IPV    ++L  L +L            +A+ G+ GKTTT  ++
Sbjct: 76  AVKRDNPEVVAARAKLIPVVRRAEMLAELMRLR---------WSVAVGGTHGKTTTTSLV 126

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L + K     I   N  I             D+ + E   S    +R     +   I
Sbjct: 127 AAVLEAAKLDPTVI---NGGIIEAYGTNTRMGKGDWMVVEADESDGSFLR-----LPSVI 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +V+T + P HL ++   E + +A  +    +   G   L  D    + +  +   L    
Sbjct: 179 SVVTNMDPEHLDHWGSPEAMEAAYDQFVSNVPFYGFAVLCIDHPAVQQMIPR---LSDHR 235

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------KSMEVVHHGIGYHMAQNMLMT 299
           I ++G S  AD +  K       +  EV L         K+       +G H  QN L  
Sbjct: 236 IVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRRTRKAGPFRLPMLGSHNVQNALAA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + + +    D     L+ F   +   +R+      G  T+ID+ Y  +P  + A +  
Sbjct: 296 IAVATEMDISDDVIRSGLASFRGVK---RRFTRTGEAGGITVIDD-YGHHPVEIAAVLKA 351

Query: 360 LSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             Q         + PH   R   +  D C     + +       V  +Y      L    
Sbjct: 352 ARQAGANHVIAVMQPHRYSRLKILFSDFCACMNDADT-----VIVSDVYAAGEDPLPDAS 406

Query: 411 VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSN 453
              L + L    H       + D L   I +    GD VV   + 
Sbjct: 407 RDKLIEGLRERGHRSVVPLSSPDHLAEMINAIAKPGDYVVCLGAG 451


>gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. JLS]
 gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS]
          Length = 508

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 153/482 (31%), Gaps = 56/482 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             + +QA+       VP   V G+++  +   P + F A+ G    G  F+  AV  GA 
Sbjct: 18  LAEQVQAVPAPGF-PVPDIRVTGVTLRGQDALPGDLFAALPGSSAHGARFVADAVAAGAV 76

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
            V+ +      +G    +PV    D    L  +A            ++ +TG+ GKTTT 
Sbjct: 77  AVLTDAAGAVMLGADPVVPVLVHPDPRAVLGAVASTVYGHPSQHLRVVGVTGTSGKTTTT 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFEL 167
            ++   L +  +    IG+    I      + +                   VD  + E+
Sbjct: 137 YLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVMEV 196

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IFL 225
               L   R     V       T ++  HL     +E+   AKA +F+   +T      +
Sbjct: 197 SSHALTLGR--VDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVV 254

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEV 283
             DD     +  ++     + +      + AD++    +     +  ++ V   G    +
Sbjct: 255 CVDDDAGRAMAIRA----GRAVTVSASGRPADWRAEDVRAVEAGAQEFVAVDPAGVHHGL 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G++   N L+   ++  +    + A             G+       Q F  L+D
Sbjct: 311 RIALPGHYNVANCLLAAALLDAVDVSPEQAAPG---LRTATVPGRLEAVDRGQDFLALVD 367

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++A +  L      G GR   V G     G         +  V +      
Sbjct: 368 --YAHKPGALRAVLETLRG---QGTGRIAVVFGA---GGNRDAGKREPMGRVAAEL-ADL 418

Query: 404 VWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +              A   A      V                   GDVV+V  
Sbjct: 419 VVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEVGDRREAIAHAVRWARSGDVVLVAG 478

Query: 450 KS 451
           K 
Sbjct: 479 KG 480


>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
 gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
          Length = 450

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 127/349 (36%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP---ASQVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+       P IAVIT + P H+      E+  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGIQEF----HPEIAVITNLMPTHIDYHGSFEDYVAAKWNIQSNMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K++A     +  F   +  D          E   +  + +    
Sbjct: 219 YLVLNFNQELAKELATKTNAA----VVPFSTLEKVD------GAYLEDGLLYFRGEKVMA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D +T  + LS F   +    R +          
Sbjct: 269 ADEIGVPGSHNVENALATIAVAKLRGVDNETIKETLSAFGGVK---HRLQFVDQINGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++   +  +  +            +GDVV++
Sbjct: 373 KKMVILGQSAERIKRAADKAGVAYVDATDIADATRKASELAEEGDVVLL 421


>gi|323466063|gb|ADX69750.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           H10]
          Length = 437

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 129/366 (35%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGR---------GKGVPDSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ  + K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATEIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D     L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L    +   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RGVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|319440257|ref|ZP_07989413.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium variabile
           DSM 44702]
          Length = 499

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 147/448 (32%), Gaps = 63/448 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  AV      +  +   + +     IP+    DVL  L     A         + ++G+
Sbjct: 75  LPDAVVISFAAIPHDNPELVAAAEQGIPLLRRSDVLALLMAGRRA---------VLLSGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  M  + L +           +  IG  L  A        G   +  +   +  
Sbjct: 126 HGKTSTTSMAVVGLQAAG------MDPSFAIGGQLNRAGTNAHHGTGDVFVAEADESDGS 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           FL++   P +AV+T I   HL  +   E            +   G +    DD     L 
Sbjct: 180 FLSY--SPTVAVVTNIEADHLDFYGTEEAYHEVFGAFAGRVVPGGFLVTCVDDPGAAELA 237

Query: 237 AKSHALGIK-----TIYSFGKSKNADFQ---------LRKWKQCSEQSWMEVQLQG---- 278
            +  A  ++      +  +G +   +           +         S   V+  G    
Sbjct: 238 ERVVAGEVELAEGTRVLGYGTAAAFEAHPTVPVGALIVDAGTTPDGGSQAAVRFPGAGGS 297

Query: 279 ---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  V     G HM  N    +    ++ +D+D  I  ++ F   +G  +R+     
Sbjct: 298 GDDTTRTVTVRTPGRHMLLNATAAVLAGGLVGSDLDEVIDGVAAF---DGVRRRFEYHGT 354

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            G   + D+ Y  +P  ++A +S           +    GR IAV      +   + +F 
Sbjct: 355 AGGVEVYDD-YAHHPTEVRAVLSAARDKVAARAAADGVAGRVIAVF--QPHLYSRTITFA 411

Query: 390 IDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            + AE         VL +Y      + G     + D +  ++ V Y E    +   +   
Sbjct: 412 EEFAESLSLADTAVVLDIYGAREDPVEGVTSRIITDRM--TVPVVYEERFSDVPERVAEV 469

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              GDVV+   + +     L + +L   
Sbjct: 470 ARPGDVVLTVGAGTVTM--LADEILRRL 495


>gi|225870026|ref|YP_002745973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
 gi|225699430|emb|CAW92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
          Length = 457

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 122/351 (34%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++   +    G+          +A+     D
Sbjct: 110 AYLVSEAPIIGITGSNGKTTTTTMIADVLNAGNHSALLAGNIGFP---ASEVAQAATAKD 166

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   +PHIAVIT + P HL      E+  +AK  I   +    
Sbjct: 167 ILVMELSSFQLLG----TEQFQPHIAVITNLVPTHLDYHGSFEDYIAAKRRIQHRMTDKD 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGK 279
            + LN D    + L  K+ A  +     F   +  D  +    +    E+  M       
Sbjct: 223 YLVLNADQELVKSLAQKTKASPV----FFSTKEKVDGAYLADGYLYFKEERLMSA----- 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +         + LS F   +    R +        
Sbjct: 274 ---AELGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVK---HRLQLVGTLNQV 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 328 TFYNDSKSTNILACQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDLV------ 374

Query: 400 NISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     +K A     +    ++ +             GD++++
Sbjct: 375 GLKKMILLGESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|226226835|ref|YP_002760941.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
 gi|226090026|dbj|BAH38471.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
          Length = 501

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 138/411 (33%), Gaps = 56/411 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +A+  +  IP+           +    A   S  T+I ++G+ GKTTT  M
Sbjct: 105 SAIPATHPEMAAARAAGIPIIR---------RAEALADAVSGGTLIGVSGTHGKTTTTVM 155

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            T AL+S  +     +G         L L       D  + E       E       + P
Sbjct: 156 TTEALASAGRHPTGVVGGRVESWEGNLRLGG-----DTYVVEA-----DEYDRSFLALDP 205

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+  +   HL  +  +++I          + K  T+    DD     L+  S     
Sbjct: 206 TVAVVLNVEADHLDIYRDLDDITRTFEVY---VSKAKTLVRCADDEGAMSLRVASS---- 258

Query: 245 KTIYSFG----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           + I ++           ++ +A          +  S   V   G+ + E+     G H  
Sbjct: 259 REIIAYSATVPGTLPAPRAVDARLLAADLVLDAAGSRFMVVFDGERLGEISLAVPGLHNV 318

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  +G    L   V      L+ F   + R +R   A        + + Y  +P  +
Sbjct: 319 RNALAAIGSGLALGCTVAQMAPGLAGFRGVQRRFQRLGSAAG----VEVVDDYAHHPTEV 374

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHV 404
           +A ++      P   GRRI VL     +   ++    + A+ L          +Y     
Sbjct: 375 RATLAAARHAFP---GRRI-VLAFQPHLYSRTRDLQQEFADALRETDVLYLCDIYGARET 430

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              G     + D +P  + V +      +   +   + +GDVV+   +   
Sbjct: 431 PEPGVTSSLVADRIPGDV-VRWQGPRTDVVPALLQGVAEGDVVLTMGAGDI 480


>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
 gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
          Length = 450

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 125/349 (35%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A I+ ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISDAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP---ASQVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+       P IAVIT + P H+      E   +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGIQEF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQSNMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K++A    T+  F   +  D          E   +  + +    
Sbjct: 219 YLVLNFNQELAKELATKTNA----TVVPFSTLEKVD------GAYLEDGLLYFRGEKVMA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D +   + LS F   +    R +          
Sbjct: 269 ADEIGVPGSHNVENALATIAVAKLRGVDNEIIKETLSAFGGVK---HRLQFVDQINGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++   +  +  +            +GDVV++
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELAEEGDVVLL 421


>gi|23099686|ref|NP_693152.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanobacillus iheyensis
           HTE831]
 gi|33301400|sp|Q8EP84|MURC_OCEIH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22777916|dbj|BAC14187.1| UDP-N-acetylmuramate-alanine ligase [Oceanobacillus iheyensis
           HTE831]
          Length = 438

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 35/318 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+TG+ GKT+T  +L+  L S       IG    +  V         D ++ +FE
Sbjct: 100 QYTSIAVTGAHGKTSTTGLLSHVLKSAYPISYLIGDGTGNGHV---------DSEYFVFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F+ ++++  A   + + ++K   I   
Sbjct: 151 A-----CEYRRHFLKYEPDYAIMTNIDFDHPDYFTSLDDVVDAFQSMADRVKK--CIVAC 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
            DD   + +  K        +  +G + + DFQ +   + +  +  +V ++    +    
Sbjct: 204 GDDEQLQGIHTKV------PVIYYGFNDSNDFQAQNVVETANGTEFDVFVRNTYYDHFII 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I       V+     +      EG  +R+     +    ++ + 
Sbjct: 258 PTYGNHTVLNALAVIAICHYEGISVEH----MKQLDTFEGVKRRF--TEKEIGSQIVIDD 311

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I    +  P+     +A+          +++F  + A+ L+     +V+
Sbjct: 312 YAHHPKEISVTIESARKKYPNKN--VVAIF--QPHTFTRTKTFLKEFADSLNE--ADNVY 365

Query: 406 LSGFHVLALKDALPRSIH 423
           L      A +D+   +I+
Sbjct: 366 LCDIFKSAREDSGQLTIN 383


>gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
 gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
          Length = 483

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 140/405 (34%), Gaps = 57/405 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D         I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITAGLSFYVSEIDY-----GADI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               L L RM        +   + E+       +    + +  
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAY--LTKRVYGLTF 202

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I+P H+        E+    K  + E    +  + +N     F ++K +   +
Sbjct: 203 DVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYI 259

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLG 301
                  + ++             +E       ++GK       + IG    +N L    
Sbjct: 260 PHDFYGDYSEN-----------VITESQAFSFHVKGKLENTYNINLIGKFNQENALAAGL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ 
Sbjct: 309 ACLRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 364 E---HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
 gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
          Length = 481

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 151/458 (32%), Gaps = 67/458 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR + P   FFA KG  +   +F+ +AV+ G    V   D       + IP  
Sbjct: 35  FEHLSYDSRDVTPSSLFFA-KGAGFK-REFLENAVKTGLSFYVSEKDY-----QVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY------- 137
            V D+  A++    A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  IVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAYNILKQSHKPAMLSTMNT 147

Query: 138 ----ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                            L L RM  +         I E+       +    + +   + V
Sbjct: 148 TLDGKTFFKSTLTTPESLDLFRMMSEAVDNGMTHLIMEVSSQAY--LTKRVYGLTFDVGV 205

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  +   LE +  + +N     F+ +  +        
Sbjct: 206 FLNISPDHIGPIEHPTFEDYFYHKRLL---LENSQAVIVNSGMDHFDFVAEEVA------ 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K+ DF  +  +   + S     + +GK + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVQHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   K ++        G+        G    +D  Y  N  S+   + V   ++
Sbjct: 311 RLGASLEDIKKGIAQ---TSVPGRMEILTQANGAKVFVD--YAHNGDSLDKLLQV---VT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
            H +GR   +LG     GE  +    D   VL+ Y    V LS         L +   + 
Sbjct: 363 DHQKGRIALILGAPGNKGESRR---KDFGHVLNTYPEVDVILSADDPNKEDPLTICQEIA 419

Query: 420 RSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
             I+       +  + +   +  +    D +V+  K +
Sbjct: 420 SHINREVRIIVDREEAIKTAMSETTGSKDALVIAGKGA 457


>gi|320352820|ref|YP_004194159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121322|gb|ADW16868.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
          Length = 458

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 138/397 (34%), Gaps = 34/397 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH     A   GA +V+           L +        L  L +LA+AA  +    +IA
Sbjct: 62  GH---TAAFLAGADMVI---PGPGVPLDLPVLQAARKQGLPVLGELALAAG-QYAVPVIA 114

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKTT   ++   L +  K     G+    +   L     P   D  + EL    L
Sbjct: 115 VTGSNGKTTVTSLIGELLRASGKNPFVGGNIGTPL---LDYFADPQGYDAVVLELSSFQL 171

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                L    RP I ++  I+P HL     +E    AK  +F   +      L  DD   
Sbjct: 172 D----LAGAFRPDIGLLLNISPDHLDRHGSLEAYTLAKQNLFRHQQLGDRAILGADDP-- 225

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             + A +        ++FG+++    ++   +     + M   L GK+ E V  G   H 
Sbjct: 226 --VAAATPLNPEVGRFTFGRAEGCTARIADGRILL--TLMAGALSGKT-EYVLSGTTLHS 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           + N L     +  +T                     R            I++S   N  +
Sbjct: 281 SVNQLNAAAAILAVTLAGCEQAGIAEGLRRFVPPPHRMAEVATIDGVRFINDSKATNIGA 340

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++AA+          E   + + G   +  + S      L   +    + H+ L G    
Sbjct: 341 LEAAL-------AGCESPVVLIAGGRDKGSDYS------LLREVVGRKVKHLVLVGEAAG 387

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ AL   +    + TM+       ++   GD+V++
Sbjct: 388 LMRAALGSLVPTEAATTMEDAVRRAMTAAASGDLVLL 424


>gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 350

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 26/258 (10%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR + P + + AI+G   DGH FI  AV +GA  VV   D         +P   V     
Sbjct: 6   SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDVPYVRVTSARR 65

Query: 94  ALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           A + L   V        T++ +TG+ G TT+   LT  L         + S  N  G+  
Sbjct: 66  AASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNETGLRT 125

Query: 152 TLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             A +                       + E+     G ++  T  V   +A+ T +   
Sbjct: 126 VPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSH--GIVQHRTSDVDFDLAIFTNLTRE 183

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL     +E  A+AKA +F GL        LN DD + +++     A     I ++G  +
Sbjct: 184 HLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENCVA----PIVTYGV-R 238

Query: 255 NADFQLRKWKQCSEQSWM 272
           + D + R  +   ++  M
Sbjct: 239 SGDVRGRGERDRGKRPEM 256


>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
 gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
          Length = 450

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 127/351 (36%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   + C      EV +    
Sbjct: 219 FLVLNFNQDLAKELASKTQA----TVVPFSTQEKVDGAYLEDGQLCFRG---EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L  + +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALAAIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIQGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAAEKAG-VTYVDATDIADATRKAYELATQGDVVLL 421


>gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           m3-13]
          Length = 449

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 145/415 (34%), Gaps = 52/415 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLA------- 99
           ++G++   + + KG  +V            + +    P     + L  L           
Sbjct: 43  FEGNEQAEYLLSKGMEVVCGGHPTNIFDQKIDVVFKNPGIPYHNPLVQLATEKGIPVLTE 102

Query: 100 -VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
              A   S+A II ITGS GKTTT  ++   L++ KK+    G+  N   V + +A+   
Sbjct: 103 VELAYQISEAPIIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGN---VSVEVAQQAT 159

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + D  + EL    L      T + RP I+V   +  AHL     ++E   AKA+IF    
Sbjct: 160 EKDIMVTELSSFQLMG----TDIFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIFFNQT 215

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQL 276
           K     +N DD+    L          TI  F  +K  D  +    +    ++  + +  
Sbjct: 216 KEDYAVVNADDAQVMKLSEGIQ----PTIVPFSTNKTVDGAYLKDNYVCFKDEKIISID- 270

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H  +N+L  +  V +     +  I+ L+ F   +    R +    +
Sbjct: 271 -------QIVLPGKHNLENILAAVAAVKLSGVSNEAIIEVLTRFSGVK---HRLQFIGER 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N  + + A+S             + +L    + G            + 
Sbjct: 321 DGRRFYNDSKATNILATQKALSAFENN--------VVLLAGGLDRGNEFDDL------LP 366

Query: 397 SLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + N+  +   G     L      +    + + + ++            GDV+++
Sbjct: 367 YMSNVKVLVTFGETAEKLMRTASEAGIKQIKHVDNVEKAVPVAYEMSEGGDVILL 421


>gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0012]
          Length = 513

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAE 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|54023735|ref|YP_117977.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardia farcinica IFM
           10152]
 gi|59798147|sp|Q5YYX8|MURC_NOCFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54015243|dbj|BAD56613.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Nocardia farcinica
           IFM 10152]
          Length = 501

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 142/432 (32%), Gaps = 55/432 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL +L +             + ++G+ GKT+T  M
Sbjct: 90  AAIPKTNPELVEAQRRDIPVLLRPAVLASLMRGHR---------TLLVSGTHGKTSTTSM 140

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            ++    V   L     +   G  E+ ++   E         P 
Sbjct: 141 LIVALQHCG--------FDPSFAVGGELNEAGTNAHHGTGEIFVAEADESDGSLLQYDPD 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH---AL 242
           +AV+T I   HL  F           +  + L   G + +  DD     L  +     A 
Sbjct: 193 VAVVTNIESDHLDFFGSDAAYTQVFDDFADRLAAGGLLVVCLDDPGSRALAERVGPRLAE 252

Query: 243 GIKTIYSFGKSKNAD------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQ 294
               +  +G  + AD       +L  W+        + QL  +           G HMA 
Sbjct: 253 RGVRVLGYGSGELADAPVPVGVRLHSWEPRDVGGVAQFQLGDEPAPRTLRLSVPGRHMAL 312

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L       AD+D  I+ L  F    G  +R++    +    + D+ Y  +P  ++
Sbjct: 313 NALAALLAARAAGADLDEIIQGLEGFG---GVHRRFQFVGRENGVRVFDD-YAHHPTEVR 368

Query: 355 AAI--------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLS 397
           A +              +   +GR I V      +   + +F  +            VL 
Sbjct: 369 AVLGAAAALVEQEARDGARSRQGRVIVVF--QPHLYSRTATFATEFGAALSLADEVVVLD 426

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +Y      + G +   +  A+  +  VHY   M  +   +    + GDVV+   +     
Sbjct: 427 VYGAREKAMPGVNGALVAQAV--TAPVHYQPDMSRVGRQVAGLALPGDVVITMGAGDVTM 484

Query: 458 --YRLINLLLEE 467
              ++++ L   
Sbjct: 485 LGSQILDGLRAR 496


>gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
 gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
          Length = 506

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 158/470 (33%), Gaps = 64/470 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  +S DS+ +     F   KG H+    ++  AV KGA   +           ++I
Sbjct: 30  NTVVALVSCDSQQVVRNTLFLC-KGVHFKA-QYLQDAVNKGAFAYL----SEVEYPEVNI 83

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----KKT 136
           P   + +V  A+  LA            +I +TG+ GK+TT   +   L +      K  
Sbjct: 84  PWIPLTNVRYAMANLATMYYNDPWKELNVIGLTGTKGKSTTTYYVKAILDTYLERVGKNE 143

Query: 137 YACIGSYNNHIGV-----------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTH 180
            A I S   + GV           PL L R   +      DF   E+    L   R L  
Sbjct: 144 SAVISSIGTYDGVERFESHLTTPEPLDLERHFSNAVESKIDFVTMEVSSQALKYDRVL-- 201

Query: 181 LVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            V   +A    I   H+S       E+  ++K  IFE         +N D    + +   
Sbjct: 202 GVNFSVAAFLNIGYDHISSVEHPTWEDYFASKLRIFEQCTYG---LVNLDSDHCDEILDA 258

Query: 239 SHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A   K + +F ++ + ADF      +       +V+      E      G     N L
Sbjct: 259 AKAA--KKVITFSEANDTADFYGYDVHKVGNDIVFKVRGSDFDEEFKLSMPGLFNVSNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I  +    V       +  +  +  G+      N    T I + Y  N  S +   
Sbjct: 317 CAIAIARLYDIPVRDI---QAGLYHAKVPGRMEIYTSNDKKITAIVD-YAHNQLSFQKLF 372

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-----L 412
             +    P    R   + G     G+ ++    DL E+    N  +++L+         L
Sbjct: 373 ESVRSEYPGY--RATIIFGCP---GKKAKDRRHDLGEIAGK-NADYIYLTEEDAGEEDPL 426

Query: 413 ALKDALPRSIHVHYSE-----TMDGLFLFI---QSSLVDGDVVVV--KSS 452
           A+   + R++    +        +          +++    V+++  K +
Sbjct: 427 AIAHEIARAVEKEKAPYEIIIDREKAIARAVEDAANVQGNTVILITGKGA 476


>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
 gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
          Length = 462

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 136/410 (33%), Gaps = 46/410 (11%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVF--GVDDVLGALNKLAVAARLRS----------KA 108
           V + +  V V     +++    + V   GV   L ALN++                   A
Sbjct: 49  VDRSSIAVKVGAQYESALEGADLVVISPGVPTHLDALNRVRARGVRVIGELELASRFLTA 108

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-----ARMPVDVDFG 163
            ++A+TG+ GK+TT  ++   L    K     G+                A      ++ 
Sbjct: 109 PVVAVTGTNGKSTTVTLIGKFLQESGKRAFVGGNLGIAASEAALTSVQAKAGSAAPYEYV 168

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L      T    P IA I  +   H+  ++ +E+  +AKA IF         
Sbjct: 169 VLEVSSFQL----ETTEQFHPWIAAILNVTLDHMDRYASVEDYVAAKATIFANQTAGDYS 224

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD+    L+ ++      T+  F +S  A           +   +   ++G+  E+
Sbjct: 225 LFNLDDARVAALRGRTKG----TVLGFSRS-GATVSGVAGATVLDGDLIVTTVRGRREEI 279

Query: 284 V----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG H  +N++  +    +    ++      +V     G          +   
Sbjct: 280 CRRSDMRLIGLHNVENVMAAVTYGLLCGCSIEAV---RAVLRSFPGLEHALEVVRERRGV 336

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  ++  A+  + Q           + G   + G+ S+       E     
Sbjct: 337 RFVNDSKGTNVDAVLKALEGIDQ-------PIWLIAGGRDKGGDFSR------LERAIRE 383

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     ++ A+        + T+             G+VV++
Sbjct: 384 RVKGLILIGEAAGRIQAAMGDFDRCRPAATLRDAVELAAREAQPGEVVLL 433


>gi|184156588|ref|YP_001844927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ACICU]
 gi|332874928|ref|ZP_08442779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
 gi|226711877|sp|B2I1V6|MURD_ACIBC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183208182|gb|ACC55580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ACICU]
 gi|322506475|gb|ADX01929.1| murD [Acinetobacter baumannii 1656-2]
 gi|323516354|gb|ADX90735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332736871|gb|EGJ67847.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
          Length = 448

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKRFKGLEHRCEYVKTVR---DVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +   +    
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYAKV---- 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 375 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
 gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
          Length = 508

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       S      
Sbjct: 37  QREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVSAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +G  I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGCLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|256395244|ref|YP_003116808.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
 gi|256361470|gb|ACU74967.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
          Length = 469

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 151/412 (36%), Gaps = 33/412 (8%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           I  A +   G   VVV+TD+ A    +   V      L  L++ +  A L      +AI 
Sbjct: 66  IGQAPENLDGVDTVVVSTDIPAGNIEV---VEAKARGLRLLHRASALASLMPGYRSVAIA 122

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M+T+AL             +    +   +         G  ++ ++   E
Sbjct: 123 GTHGKTTTSSMVTVALRHAG--------LDPSFVIGGEIGETGESGHAGSGDVLVAEADE 174

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP I+VIT I   H  +F+ + ++ +   +    LE  GT+    DD     
Sbjct: 175 SDGTFTHYRPDISVITNIELDHPDHFADVAQVRAEFQDFAGRLEPGGTLVCYADDPAART 234

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMA 293
           +  ++ A G++ + ++G   + D ++              V  +     +       H A
Sbjct: 235 IAERTAARGVR-VLTYGAGADVDIRVTDVSTVGGFPVFTLVTAEDAHGPITLSIPARHNA 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N    LG+   L  DV+  ++ ++ F    G  +R +         + D+ Y  +P  +
Sbjct: 294 LNAAAALGVALALGVDVEPYLEGVAGFS---GARRRMQFLGEASGVKVYDD-YGHHPTEI 349

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISH-- 403
            + +S   +++    GR +A           +   H         D+  VL +Y      
Sbjct: 350 ASVLSAARELAGQ--GRVVAAF-QPHRYFRTNTFLHEFGPALGGADVVVVLDVYAHGEKP 406

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +   G  V+A +  LP    V +    D +   +      GD+VV   +   
Sbjct: 407 IPGVGGDVIAAETGLPPEASV-FEPDFDRVPQRLAELAAPGDLVVTVGAGDV 457


>gi|227485010|ref|ZP_03915326.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237007|gb|EEI87022.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 468

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 139/401 (34%), Gaps = 48/401 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  + + +     L  PV      LGAL        +R+    IAI+GS GK+TT  M+
Sbjct: 79  AIADDNEELIEAKKLDAPVVTRGVFLGAL--------MRNYKNSIAISGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L             N  I +   L  M  +V  G  +  ++   E +       P  
Sbjct: 131 SKIL--------LHSDENPTILLGGILDDMKGNVKVGNEDFLVTEACEYKGNIRYYFPQT 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   HL  +  + +I +   E     ++     LN ++   +L+           
Sbjct: 183 VIILNIDEDHLDYYKDLNDIVNTFKEYLRNQDENSKTILNLNEENNKLILDAVQG----D 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++G ++ +AD+               ++ ++   +E      IG H   N + ++   
Sbjct: 239 LITYGQENPDADYYATNINFDEVGRPSFDLMMKNGDVEHFKLGVIGRHNINNAMASIIAT 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D++T            G  +R +   +    T++ + Y  +P+ +   +  L + 
Sbjct: 299 YENGIDINTI---RENILKYTGLDRRMQIIGHVNKTTIMTD-YGHHPSEILVTLDALKE- 353

Query: 364 SPHGEGRRIAV------------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             H +GR I V              D       +         V  +Y     +    H 
Sbjct: 354 --HTKGRLICVWQPHTYSRTKTLFNDFLNSFNSADE-----IIVTDIYAAREKFDPTIHS 406

Query: 412 LALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             + DA+  + ++  Y  T +    +I + + D D+V+   
Sbjct: 407 KDVVDAMVKKGLNAKYISTFEEARDYIYTIIKDDDLVITTG 447


>gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4000]
 gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0312]
 gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0645]
 gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0630]
          Length = 514

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|262280678|ref|ZP_06058461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257578|gb|EEY76313.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 455

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 124/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  ++  I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 107 RRATEVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 162 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGDMWGYHQAKHRIFQGVKK--- 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 215 VIFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDGDGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFTGLEHRCEFVKTV---DDVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + +      + +   +    
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFAP-LRSSIEKYAKV---- 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 382 -VVLIGEDASVIEQAIQGTTKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|313813206|gb|EFS50920.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA1]
          Length = 471

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 137/406 (33%), Gaps = 35/406 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L   V      L   ++ A  A L      ++I G+ GKTTT
Sbjct: 73  AGARTVVVSSAIRPDNPEL---VEAHRLGLRIWHRSAALAALMLGRGGVSIAGTHGKTTT 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLT 179
             M+   L       + +      IG PL    M   +  G   + E   S    +++ +
Sbjct: 130 TGMVATMLDCAGADPSYV------IGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V     V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QIV-----VVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +     + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESTDTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F    G  +R++        ++ D+ Y  +P  ++A +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFT---GTLRRFQLVGRVADVSVFDD-YAHHPTELRATLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLYNISHVWLSGFH 410
             ++   G+GR IA       +   ++ F  +    L          +Y      + G  
Sbjct: 354 ARRV-VTGQGRVIACF--QPHLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + DA +       Y      L   +   +  GD+V    +   
Sbjct: 411 GELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVTTLGAGDV 456


>gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
 gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
          Length = 506

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|199599430|ref|ZP_03212824.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           HN001]
 gi|199589683|gb|EDY97795.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           HN001]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 105/293 (35%), Gaps = 32/293 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGVRDSKFFVFEA- 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   + G E++ +A       ++K   I    D
Sbjct: 154 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYHGFEDVYNAFETEANQVQK--AIVAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DFQ R  K+ ++ S  +     + +       
Sbjct: 208 DPWLRKLKAKV------PVYYYGTSDRDDFQARNVKRDTKGSSFDAYFHDELIGHFFVPL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 262 FGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  +KA +    Q  P      IAV          +Q++     +VLS  +
Sbjct: 317 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTYSRTQAYEPQYVQVLSQAD 365


>gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
 gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
          Length = 513

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 158/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       S      
Sbjct: 42  QREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVSAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G    ++          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +G  I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGCLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|116495192|ref|YP_806926.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei ATCC
           334]
 gi|227534790|ref|ZP_03964839.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239632074|ref|ZP_04675105.1| UDP-N-acetylmuramate-L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|122263391|sp|Q037Y8|MURC_LACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116105342|gb|ABJ70484.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei ATCC
           334]
 gi|227187546|gb|EEI67613.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526539|gb|EEQ65540.1| UDP-N-acetylmuramate-L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 119/359 (33%), Gaps = 50/359 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGIPDSKFFVFEA- 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   ++G E++  A       ++K   I    D
Sbjct: 154 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYTGFEDVYDAFETEANQVKK--AIVAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DFQ R   + ++ S  +     + +       
Sbjct: 208 DPWLRKLKAKV------PVYYYGISDRDDFQARNVDRDTKGSSFDAYFHDQLIGHFFVPL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 262 FGEHSVLNALAVVAVAHMEKLDAKLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  +KA +    Q  P      IAV          +Q++     +VLS       +L+
Sbjct: 317 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTFSRTQAYEPQYVQVLSQ--ADQTFLT 370

Query: 408 GFHVLALKDALP----------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                A +              +   V + E M  L  +         VVV   +    
Sbjct: 371 PIFSSAREKTGKIRSEDITAQIKGAAVIHQEDMKPLLQY------HNAVVVFMGAGDIQ 423


>gi|325124219|gb|ADY83742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 448

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 155 IVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDGDGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  +        + +   +    
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFGP-LRSSIEKYAKV---- 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 375 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|237747018|ref|ZP_04577498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378369|gb|EEO28460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 498

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 147/438 (33%), Gaps = 45/438 (10%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           R   P+  F A      D  +F L AV  G    V   +++A      +PV+   ++   
Sbjct: 47  RQEIPEAEFVAGPFALLDFENFDLVAVSPGLRPDVELKEILAFAKEHDVPVWSEIEMFAQ 106

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTL 153
             K     R + +  +IA+TG+ GKTT   +         KT    G+ +   + V L +
Sbjct: 107 ALKGLEKER-QYRPNVIAVTGTNGKTTVTSLTGHMCRRAGKTVRLAGNISPAALDVLLDV 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R     +  + EL    L    F T+ +    A +  +   HL     +E   +AK  I
Sbjct: 166 IRKDQLPEIWVLELSSFQL----FTTYSLEADTATVLNLTQDHLDWHGSMEAYGAAKERI 221

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F    +     LN  D     ++          + SFG  + ++          +  W+ 
Sbjct: 222 F---GEKTVRVLNRGDETVMQMRTSQA-----PVVSFGTDEPSEPGSYGLHLDRDIEWLS 273

Query: 274 VQLQGKSMEVV---------------------HHGIGYHMAQNMLMTLGIVSILTADVDT 312
           V    +   +                          G H A N L  L +   +      
Sbjct: 274 VMSPREEEALRKNRKNAVQQEYRIQNLMPAGALRIRGRHNASNALAALALCRAIGLPFAP 333

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++A        G   R            ID+S   N  +  AA+  L +     E R I
Sbjct: 334 LLQA---LREYPGEPHRVELVAIVKDVAYIDDSKGTNVGATVAAVKGLGESEAREERRII 390

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMD 431
            + G + +  + S   H     V+S Y +  V L G     + DAL    +   Y ++++
Sbjct: 391 LIAGGLGKEQDFSPLSH-----VVSRY-VKAVLLIGKDAHLIHDALSSAGVEQIYCDSLE 444

Query: 432 GLFLFIQSSLVDGDVVVV 449
              L         D+V++
Sbjct: 445 QAVLRGSEIARKNDIVLL 462


>gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
 gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
          Length = 511

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 42  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 97

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 98  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 155

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 156 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 213

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 214 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 270

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 271 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 329

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 330 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 384

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 385 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAK 439

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 440 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485


>gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1302]
          Length = 516

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 45  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 100

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 101 --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 158

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 159 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 216

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 217 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 273

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 274 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 332

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 333 SAAIASVLVGASKEECQQGITATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 387

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 388 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAK 442

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 443 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488


>gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
 gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
          Length = 481

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 154/462 (33%), Gaps = 69/462 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +   + +S DSR + P   FFA KG  +   +F+ +AV+ G    V   D       + I
Sbjct: 32  EVTFDHLSYDSRDVTPSSLFFA-KGAAFK-PEFLENAVKAGLSFYVAEKDY-----QVGI 84

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D+  A++    A     + K  ++A TG+ GKTT        L       A + 
Sbjct: 85  PAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQ-NHKPAMLS 143

Query: 142 SYNNHIGV------------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               L L RM  +         I E+       +    + +  
Sbjct: 144 TMNTTLDGKNFFKSILTTPESLDLFRMMAEAVANGMTHLIMEVSSQAY--LTKRVYGLTF 201

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I+P H+        E+    K  +   LE +  + +N     F+ +  +    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---LENSRVVIVNSGMDHFDFIAEEVA-- 256

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
                      K  DF  +         S    +  GK + +     IG     N +   
Sbjct: 257 ----------DKEHDFYGKNSDNAVKHGSGFSFKASGKLAGDYDIQLIGDFNQDNAMAAG 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L A++    + ++        G+        G  T +D  Y  N  S+   + V 
Sbjct: 307 LACLRLGANLQDIKEGIAQ---TSVPGRMEVLTQTNGAKTFVD--YAHNGDSLDKLLQV- 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSG----FHVLALK 415
             ++ H +G    +LG     GE  +    D   VL+ Y ++  +  +        LA+ 
Sbjct: 361 --VTSHQDGHISLILGAPGNKGESRR---KDFGHVLNTYPDVDIILTADDPNKEDPLAIC 415

Query: 416 DALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
             +   I        +    +   +  ++   D VV+  K +
Sbjct: 416 QEIASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKGA 457


>gi|119358487|ref|YP_913131.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
 gi|158512610|sp|A1BJY0|MURD_CHLPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119355836|gb|ABL66707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 464

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 126/354 (35%), Gaps = 33/354 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGI 164
           KA II ITG+ GKTTT  ++     +   T+        +IG P +  +  M  + D  +
Sbjct: 104 KARIIGITGTDGKTTTATLVHRIFETDGMTHRYRAFSVGNIGQPFSSRVLTMRPE-DVAV 162

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTI 223
            EL    L          RP ++VIT I P HL      +   A  K  I+    K  T+
Sbjct: 163 IELSSYQLEG----CCTFRPDVSVITNITPDHLDRYEGELHNYAQTKYRIYAHQGKEDTL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKS 280
             N DD       A +       I  FG     ++A F     + C  +   +   + ++
Sbjct: 219 VYNDDDPLLHDHFASNRETLPCRIVPFGIGCKPEHAGF-AAAVRFCDHRIVFDAGAKSEN 277

Query: 281 M---EVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +   E        G H   N L  +     L    +    AL  F   E R +  R    
Sbjct: 278 IIEAEDFLKRSFRGRHNIANALAAVAAARALGIGNEAIRSALQGFSGVEHRQEFVRTL-- 335

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  ++  A+  +        GR + + G     G    S + ++A +
Sbjct: 336 -DGSDWINDSKATNINALSQALETV-------PGRMVLIAG-----GRDKGSDYREIAGI 382

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    ++ +   G     L  A    + V  + +++      ++ +  G  V+ 
Sbjct: 383 VRK-KVAALVAIGEAREKLCAAYGGMVDVRSANSLEEAVSLARALVEPGQTVLF 435


>gi|41407994|ref|NP_960830.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|48428301|sp|P61681|MURC_MYCPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|41396348|gb|AAS04213.1| MurC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 496

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 147/430 (34%), Gaps = 57/430 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL  L             T + +TG+ GKTTT  M
Sbjct: 82  AAIPKTNPELVEARRRGIPVILRPAVLAKLMD---------GRTTLMVTGTHGKTTTTSM 132

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L +AL       ++A  G                   D  + E   S    + +      
Sbjct: 133 LIVALQHCGRDPSFAVGGEMGE-----AGTNAHHGSGDCFVAEADESDGSLLEYT----- 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AV+T I   HL  +   +   +      E L   G + +  DD     L  ++  LG
Sbjct: 183 PDVAVVTNIETDHLDFYGSADAYVAVFDAFVERLAPGGALVVCVDDPGAAALARRTAELG 242

Query: 244 IKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHM 292
           I+ +  +G   +            L  W+Q   ++  +++L G+      +     G HM
Sbjct: 243 IR-VLRYGSGSHGQAPSGQPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHM 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
           A N +  L     + A  +  +  L+ F   EG  +R+      G         + + Y 
Sbjct: 302 ALNAMGALLAAIEIGAPTEAVLDGLAGF---EGVRRRFELVGTAGGPAPSSTVRVFDDYA 358

Query: 348 ANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLS 397
            +P  + A ++ +   +   G GR IAV      +   +++F  +            VL 
Sbjct: 359 HHPTEIAATLAAVRTLLEQSGGGRSIAVF--QPHLYSRTKAFAEEFGRALDAADEVFVLD 416

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +Y      L+G    ++ + +  S+ V Y          + ++   GDV+V   +     
Sbjct: 417 VYGAREQPLAGVSGASVAEHV--SVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAGDVTL 474

Query: 458 --YRLINLLL 465
               ++  L 
Sbjct: 475 LGPEIVTALR 484


>gi|313637657|gb|EFS03043.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           S4-171]
          Length = 350

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 132/370 (35%), Gaps = 55/370 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IAITGS GKT+T  +L+  + +I+ T   IG                   ++   E  
Sbjct: 5   TSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG---------TGSGTKGAEYFALEAC 55

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 + +     +P  A++T I   H   F  ++++ +A   + + ++K        D
Sbjct: 56  EYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL--GD 108

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L           I  FG  +  +FQ +   + +  +  +V  + + +       
Sbjct: 109 DVELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTRFDVYHRDEFLASFEIPA 162

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +       VD     L  F   +    R     ++G   L+D+ Y 
Sbjct: 163 YGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVK----RRFSITDKGNQVLVDD-YA 217

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     V+L 
Sbjct: 218 HHPSEIRATVNAARQ--KYPDKKIVAVF--QPHTFTRTRTFLQGFADSLNL--ADEVYLC 271

Query: 408 ----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-- 455
                     G   +A      +  H+   E  + L  +         V++   +     
Sbjct: 272 DIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PDAVILFMGAGDVQK 325

Query: 456 ---GFYRLIN 462
               + ++++
Sbjct: 326 FQAAYEKVLD 335


>gi|218460179|ref|ZP_03500270.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Kim 5]
          Length = 336

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 130/351 (37%), Gaps = 39/351 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV    ++L  L +   A         IAI G+ GKTTT  ++   L +    
Sbjct: 7   AAREKLLPVVRRAEMLAELMRFRNA---------IAIGGTHGKTTTTSLVATLLEAGGLD 57

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I      I    T ARM    ++ + E   S    ++     +   +AVIT I P H
Sbjct: 58  PTVIN--GGIINAYGTNARMGEG-EWMVVEADESDGTFLK-----LPADVAVITNIDPEH 109

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L ++   + + +A  +  E +   G   +  D    + L  +      + I ++G++  A
Sbjct: 110 LDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIE---DRKIITYGENPQA 166

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGYHMAQNMLMTLGIVSILTAD 309
           D + +  +    +S  +V+++ +    V           G H   N    + + + L   
Sbjct: 167 DVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNATAAIAVANRLGIS 226

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   K L+ F   +   +R+          + D+ Y  +P  +KA   VL       +G
Sbjct: 227 SEDIAKGLASFGGVK---RRFTLTGEWNGVQIFDD-YGHHPVEIKA---VLRAAREACKG 279

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA 417
           R IAV            S   + A   +  +   ++ V+ +G   +   D+
Sbjct: 280 RIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIEGADS 328


>gi|258508763|ref|YP_003171514.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
 gi|257148690|emb|CAR87663.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 436

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 104/293 (35%), Gaps = 32/293 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGVRDSKFFVFEA- 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   + G E++  A       ++K   I    D
Sbjct: 154 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYHGFEDVYDAFETEANQVQK--AIVAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DFQ R  K+ ++ S  +     + +       
Sbjct: 208 DPWLRKLKAKV------PVYYYGTSDRDDFQARNVKRDTKGSSFDAYFHDELIGHFFVPL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 262 FGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  +KA +    Q  P      IAV          +Q++     +VLS  +
Sbjct: 317 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTYSRTQAYEPQYVQVLSQAD 365


>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus succinogenes 130Z]
 gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           succinogenes 130Z]
          Length = 437

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 42/344 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++AITGS GK+T   ++     +        G+          L+ +  + D  + EL
Sbjct: 108 KPVVAITGSNGKSTVTTLVAEMAKADGLRAGMGGNIGIP-----ALSLLDAEYDLYVLEL 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  +R   A +  +   H++ ++ +E+   AK +I+   E   T  +N 
Sbjct: 163 SSFQL----ETTFGLRARAATVLNVTEDHMNRYADLEDYRQAKLKIYANAE---TAVINA 215

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVH 285
           +DS  +  K ++     K  +SFG+S +AD+ L+    KQ       EV L    +++  
Sbjct: 216 EDSLTQDNKQRA-----KRQFSFGES-HADYWLKTENGKQYLMAGR-EVVLPCDEVKIS- 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L ++ +   +         AL  F    G   R++ A        I++S
Sbjct: 268 ---GRHNYMNALASIALAQAVGVKTHGIRTALRTFT---GLDHRFQLAHLANGVRWINDS 321

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S  AA++ L     + EG    +LG   +  + S+       E L        +
Sbjct: 322 KATNVGSTVAALTGL-----YLEGNLHLLLGGDGKGADFSE------LEKLVNKPEIFCY 370

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G    AL     RS      ETM+     ++ +L  GD+V++
Sbjct: 371 CFGQDGAALAKLSARS---QLFETMEQAVNALRPALKSGDMVLL 411


>gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium variabile DSM 44702]
          Length = 549

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 94/511 (18%), Positives = 149/511 (29%), Gaps = 80/511 (15%)

Query: 6   TFHDLLQAIQGHSIGIVP-----------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           T   L +   G  + +             Q  V   +ID+R +     F A+ G    G 
Sbjct: 16  TLAQLAELTGGRLVDVAGTAAGVASAEQGQQTVATAAIDARDVPADGLFMAVPGTRAHGA 75

Query: 55  DFILHAVQKGAGLVVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKAT 109
            F        AG  V+  +    V   GS       VDD    L  +A           T
Sbjct: 76  RFAGQ----SAGHSVLTDEEGLGVLVDGSWQGTALVVDDCRQWLGPVAAEIHGHPSRDMT 131

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP------------ 157
           +I +TG+ GKTTT  M+  AL   +     IG+    I        +             
Sbjct: 132 VIGVTGTSGKTTTTYMMERALLGHRHV-GLIGTTGTRIDGRKIPTSLTTPEAPTLQALFA 190

Query: 158 ----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 V   + E+    L   R     V   +A  T ++  HL     +E+   AK+ +
Sbjct: 191 RMRDEGVTHVVMEVSSHALVLGR--VRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSML 248

Query: 214 F-EGLEKTG---TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           F E  +  G      +  DD +   L  ++   G  T+      + A +Q+       + 
Sbjct: 249 FTEPQDPAGELPVPVVCVDDEWGRRLAGRT---GDATVTVSTDGEAATWQVSDVAVHPDG 305

Query: 270 S-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +  + V      +E      G     N  + L  +     D   A +   V     GR +
Sbjct: 306 TQHVTVDRADGQVEYDLSIPGAFNVANATLALATLVAAGEDASIADELAEV--SVPGRME 363

Query: 329 RYRCALNQGFFTLID-ESYNANPASMKAAISVLSQI--------SPHGEGRRIAVLGDMC 379
           +   +  Q     +    Y   P ++ A +  L+          +    GR   VLG   
Sbjct: 364 KISGSSPQTAVDFLALVDYAHKPGAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGA-- 421

Query: 380 EMGELSQSFHIDLAEVL-----------------SLYNISHVWLSGFHVLALKDALPRSI 422
             G         +                         I    L+G    A +     S 
Sbjct: 422 -GGNRDHEKRPKMGAAAAAVADLVIVTDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSP 480

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                   GDVVVV  K 
Sbjct: 481 EIREIGDRAEAIRDAVGWARSGDVVVVAGKG 511


>gi|188994492|ref|YP_001928744.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas gingivalis
           ATCC 33277]
 gi|229620053|sp|B2RIF2|MURC_PORG3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188594172|dbj|BAG33147.1| UDP-N-acetylmuramate-alanine ligase [Porphyromonas gingivalis ATCC
           33277]
          Length = 456

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 136/364 (37%), Gaps = 41/364 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  +L   L        A +G  +N+    L L+      D  + E   
Sbjct: 110 LCVAGTHGKTTTSTLLAHLLKQSHVDCNAFLGGISNNYQSNLLLS---DKSDLVVVEA-- 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E     H ++P +A+IT+  P H+  +   E    +       ++  G + L Y  
Sbjct: 165 ---DEFDRSFHHLKPFMAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGA 221

Query: 230 SFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                L +        +++++    + AD+          + +      G  +E V  G+
Sbjct: 222 PVNPRLGSDV------SLFTYSSDDRQADYFASDITIRDGRLFFTWHYPGGQLEEVELGV 275

Query: 289 GYH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             H   +N +  + I  +    V+     ++ F   +G  +R+   L+     LID+ Y 
Sbjct: 276 PVHINVENAVAAMAIAHLNGVTVEELRSGIASF---KGSHRRFEKVLDTERVVLIDD-YA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG-DMCEMGELSQSFHIDLAE---------VLS 397
            +P  + AAI  + +I      R+  ++G     +   +  F+ D A          +L 
Sbjct: 332 HHPVELDAAIRSVREI----YSRKH-IMGIFQPHLYSRTADFYQDFARSLSMLDEVVLLD 386

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +Y    + L G     + D +        S+    L  ++  + +  DVV++  +     
Sbjct: 387 IYPARELPLPGVTSRLILDLIENPNKTLVSKN--DLLDYLHGNEIP-DVVLILGAGDI-- 441

Query: 458 YRLI 461
            RL+
Sbjct: 442 DRLV 445


>gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
 gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
          Length = 507

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 153/450 (34%), Gaps = 63/450 (14%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI+ DSR + P + FF  KG +++   ++  A + GA   V   +     G  +I V  
Sbjct: 30  SGITYDSRKVRPGDMFFC-KG-NFE-PAYLKAAREAGATTYVAEREYPEGTGMTAIIVTN 86

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   +  L+        ++   II ITG+ GKT++       L+        + S  + I
Sbjct: 87  VTRAMAVLSA-TYYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFSTIDRI 145

Query: 148 GVPLTLAR------------MPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVI 189
             P    +            +  D+   +        + +S    +R   + ++    + 
Sbjct: 146 VGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYDCGIF 205

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KT 246
             I P H+        E+    K ++   +  +    ++ D + FE +   + A    K 
Sbjct: 206 LNITPDHIGRNEHKDFEDYLHCKLQL---MVNSKRCIIDADTNRFEDVYGAAKATTDPKQ 262

Query: 247 IYSFGKSK---NADFQLRKWKQCSEQSWMEV-------QLQGKSMEVVHHGIGYHMAQNM 296
           IY F         D+ ++  +     +   +            + E   +  G +   N 
Sbjct: 263 IYLFSADPANGGVDYTIKNAEDDLINNRFTIAAISSTKPALAITGEYDLNVAGDYNQSNA 322

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +   ++  AD D A+K     +     G+    A+       +D  Y  N AS++A 
Sbjct: 323 TAAIIAAALAGADRDAALKP---LNEIVIPGRMEYLAIPGHGVVFVD--YAHNYASLRAL 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  +     + +G+ I V+G     G+   S      + LS       +L+         
Sbjct: 378 LKFVKH--QYHDGKAIVVVGSP---GDKGISRRAGFGKALSE-QADVAYLTTDDPG---- 427

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                      E    +   I + +  G V
Sbjct: 428 ----------FEDPQDIIAQIMAHIEPGTV 447


>gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 486

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 150/479 (31%), Gaps = 48/479 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+       +  A+    I           +S +S+ + P   F   KG  ++   ++  
Sbjct: 1   MDLSLNVTQVRAALATELIADTLTNQVFTQVSYNSKKVIPGALFVC-KGAKFNV-AYLEE 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV-AARLRSKATIIAITGSVG 118
           A++ GA   +       +   + +    V     A        A  +          S  
Sbjct: 59  AIENGALAYISEVAYPVAAAWIQVKDIRVAIPKLANAFYTTPFAAFQLTGITGTKGKSTT 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
               + +L   L++  KT   I S N + G+    + +       +FE            
Sbjct: 119 TIFLQRILDTYLANTGKTSGIISSINTYDGIVNEESSLTTPEPLELFEHFHNARQSALPF 178

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
             + +S  G        V   + V   I   H+S       E+   +K  +F+ ++    
Sbjct: 179 VTMEVSSQGLKYHRVGGVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKLMLFKQVKH--- 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N D +  + + A   A    T  S   +  ADF        ++   ++ Q+ G+ ++
Sbjct: 236 LVINLDSAEIDRVLAAIPAHVTVTTISAS-NPAADFCATNI--STDGYSIKFQVSGEEID 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G    +N L  + +            +ALS          R    + +    + 
Sbjct: 293 --LGISGLFNVENALAAIAVARHYGIPFTAIKEALSEIRVPG----RMELFIGENPNLVT 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y  N  S +       +  P    ++I + G     G  + +  +DLAEV   Y   
Sbjct: 347 IVDYAHNRLSYERLFQSCEESFPGF--KKIIIFGCP---GHKALNRRVDLAEVSDEY-AD 400

Query: 403 HVWLSGFHVLA------LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H+ L+     A        D      H  V   +     F +  S +    V++   K 
Sbjct: 401 HIILTMEDPNAEPVSEISADIAKNVKHTPVSIVDDRVESFAYALSLVEGKTVILFVGKG 459


>gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 520

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 158/462 (34%), Gaps = 55/462 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
           V G+++  +   P + F A+ G    G  F   AV  GA  V+ +      + G+L +PV
Sbjct: 42  VTGVTLRGQDAQPGDLFAALPGASAHGARFAADAVAAGAVAVLTDPSGADLLAGTLDVPV 101

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                    L + A     R   +  ++ +TG+ GKTTT  +    L +  +    IG+ 
Sbjct: 102 LVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRVAGLIGTV 161

Query: 144 NNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
              I      + +                   VD  + E+    L + R     +   + 
Sbjct: 162 GVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGR--VDGIGFAVG 219

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIK 245
             T ++  HL     + +   AKA +F+           +  DD +   + A++      
Sbjct: 220 GFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAAAAVICVDDQYGVQMAARAETP--L 277

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T+ + G    AD+++ K       +  ++ V   G   ++     G +   N  + + ++
Sbjct: 278 TVSTSG--AAADWRVEKITTAGPGAQEFVLVDPGGMHHQLGVGLPGRYNVANAALAVALL 335

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    + A             G+     L Q F  L+D  Y   P +++A +  L   
Sbjct: 336 DAVGVSPEQAAPG---LRTATVPGRLESIDLGQDFLALVD--YAHKPGALQAVLETLRAA 390

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------------V 411
            P    RRIAV+      G+        +  V +      V ++  +            +
Sbjct: 391 EP----RRIAVV--FGAGGDRDPGKREPMGRVTAEL-ADLVVVTDDNPRSEDPATIRSAI 443

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           LA   A+     +              +    GD+V++  K 
Sbjct: 444 LAGARAVASDAEIVEIGDRRAAIDHAVAWAQPGDIVLIAGKG 485


>gi|229552566|ref|ZP_04441291.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314118|gb|EEN80091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           LMS2-1]
 gi|259650069|dbj|BAI42231.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 437

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 104/293 (35%), Gaps = 32/293 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 105 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGVRDSKFFVFEA- 154

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   + G E++  A       ++K   I    D
Sbjct: 155 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYHGFEDVYDAFETEANQVQK--AIVAWGD 208

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DFQ R  K+ ++ S  +     + +       
Sbjct: 209 DPWLRKLKAKV------PVYYYGTSDRDDFQARNVKRDTKGSSFDAYFHDELIGHFFVPL 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 263 FGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 317

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  +KA +    Q  P      IAV          +Q++     +VLS  +
Sbjct: 318 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTYSRTQAYEPQYVQVLSQAD 366


>gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 446

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 142/466 (30%), Gaps = 98/466 (21%)

Query: 24  QGFVNGISIDSRSI------APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
              +  IS DSR +      A   AF   K        ++ +A + G  + +   D+   
Sbjct: 11  NSHIRFISDDSREVLSNECNAKNCAFLITKSNK----CYLKNAKENGFEIFITPQDLKQ- 65

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                                     L     IIAITG+ GKTTT  M+   L  +    
Sbjct: 66  -------------------------FLDLNLKIIAITGTNGKTTTAAMIYSILLDLGYKV 100

Query: 138 ACIGSYNN------------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           A +G+                      I   +T AR   +  + + E+    +  ++   
Sbjct: 101 ALLGTRGFFINGVKKREKGLTTPSLLEIYSAITEAR-KENCTYFVMEVSSHAI--VQERI 157

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   + ++T I   HL     +E   + K   F  L       +N D+        K+
Sbjct: 158 EGLEFTLKILTNITSDHLDYHKTLENYIATKNSFF--LSPLDLKLINKDEPNARYALQKA 215

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    ++G    A FQ+R +    +    ++    +   +     G H   N L  
Sbjct: 216 --------ITYGIESPATFQVRAYSL-KDGITAQIAYGKEESSLQCSLFGKHNLYNALAA 266

Query: 300 LGIVSIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +  V +L    +    + L  F    GR +            LI   +      M+    
Sbjct: 267 ISAVKLLENEPLQEICEKLENFGGVLGRMQVV------SQNPLIIVDFAHTEDGMEKIFQ 320

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
                      R+IAV+      G+  ++    +    + Y    ++++  +  +     
Sbjct: 321 SF-------PHRKIAVV--FGAGGDRDKTKRPKMGLCAAKY-AQKIYITSDNPRSEIPSA 370

Query: 414 --------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   +   L   + ++  E          S+L   +V+++  
Sbjct: 371 IIQEIFNGIPQTLREKLEIYLEENRAKAINMAISALKSDEVLLILG 416


>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
          Length = 413

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 134/378 (35%), Gaps = 69/378 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I++TG+ GK+TT  ++  AL    +     G+Y   +    T A    +  F   EL   
Sbjct: 83  ISVTGTNGKSTTTAVIYHALKLSGRESFIGGNYGIPLS---TFALDTTEESFTALELSSF 139

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               I  LT   R  ++V   + P HL+ +S  EE   AK  +   L+ +    +N DD 
Sbjct: 140 Q---IEDLTSF-RSRVSVFLNVTPDHLNRYSSFEEYREAKLRL---LDFSDCAVVNGDDP 192

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIG 289
            F+ LK K   LGI T +S      AD ++             +   G  +        G
Sbjct: 193 SFKHLKGK---LGIYT-FSVSTDSGADARVEGE---------LLVFSGYRIPYRELPLKG 239

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N L  L  ++++    +        F   +G   R      +G    +++S   N
Sbjct: 240 IHNLENYLAALVALAVVGLSEEEI---YEGFKAFKGLPHRCEVVGRKGGVVFVNDSKATN 296

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISH 403
           P +MK A+     +        + + G      D  E+            + L    +  
Sbjct: 297 PDAMKKALESFRSV--------VLIAGGSDKGLDFKEL------------KPLVKSRVKA 336

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVV---KSS------ 452
           +   G     L +      +V  + +M+      ++  + GD  VV++    +S      
Sbjct: 337 LVAIGETAGKLVETFKEETYVLTASSMEEAVE--RAYALAGDEGVVLLSPGCASFDMFKN 394

Query: 453 ---NSCGFYRLINLLLEE 467
                  F   +  L EE
Sbjct: 395 FQERGERFREAVKRLTEE 412


>gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Enterococcus faecalis 62]
          Length = 506

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 157/466 (33%), Gaps = 59/466 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V              
Sbjct: 37  QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 92

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACI 140
               V D+  A+    +A     ++K  +I  TG+ GKTT        L  + ++  A +
Sbjct: 93  --IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALL 150

Query: 141 GSYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVR 183
            + N+ +               L L RM        +   I E+        R   + + 
Sbjct: 151 STMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR--VYKLF 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + +   I P H+S       ++    K ++      +  I LN++  +F LLK  +  
Sbjct: 209 FDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITH---SKVIVLNHEADYFPLLKETAQQ 265

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNML 297
             +  I  +G     +          +     V+      G +        G     N L
Sbjct: 266 QKVPAIV-YGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 324

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++ A  +   + ++          R     N    T+  + Y  N  S+K  +
Sbjct: 325 SAAIASVLVGASKEECQQGIAATTVPG----RMESLTNTNGATVYVD-YAHNYDSLKNLL 379

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + + +   H +GR I ++G     G+ + S   D   VLS      V  +          
Sbjct: 380 TFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAK 434

Query: 418 LPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV--KSS 452
           + + I  H ++ M         + +   +  S    D +V+  K +
Sbjct: 435 ICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480


>gi|124004439|ref|ZP_01689284.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
 gi|123990011|gb|EAY29525.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
          Length = 479

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 141/384 (36%), Gaps = 33/384 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLAR 155
           +  V   L      +A+ G+ GKT+T  M+   +  + K   A +G         L L++
Sbjct: 100 RAEVLGFLTQDRFTVAVAGTHGKTSTSSMIAHIIHYAKKNCTAFLGGILQEYESNLILSQ 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E       E       + P+IAV+ ++   HL  +   + +  +     +
Sbjct: 160 EIDKESIMVVEA-----DEYDRSFLHLHPNIAVLNSVDADHLDIYGNEDSVLDSYVAFIK 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +++ G +F+  +      L   +         SF   +NAD Q +  +   E  + +  
Sbjct: 215 KIKENGRLFIKKEIHLGTNLLPNTVITK-----SFALEQNADCQAQHVQVSPEAFYFDFH 269

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +  +++ +     GYH   N  + + +   L  D      AL+V+   +   +R+   L
Sbjct: 270 TEDITIQNIKIKVPGYHNIINATVAIAVALELGIDPQQIRDALAVYKGVK---RRFEYIL 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMGELSQ 386
                  ID+ Y  +P  ++  +  +  + P+   +  A+          D  +    S 
Sbjct: 327 QHKNIIYIDD-YAHHPTEIEVFLKSVKAMYPNK--KITAIFQPHLFTRTRDFLDGFAKSL 383

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           S    L  +L +Y      + G     + D +         +    L+ F+Q +  D +V
Sbjct: 384 SLTDQLV-LLDIYPAREQPIQGVTSQLILDKVTIKDKTLCGKN--ELYDFLQRN--DTEV 438

Query: 447 VVVKSSNSCG--FYRLINLLLEEF 468
           V+   +   G    ++  LL E++
Sbjct: 439 VLTIGAGDIGAMVDKIGALLNEKY 462


>gi|73662332|ref|YP_301113.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|109892744|sp|Q49YH1|MURC_STAS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72494847|dbj|BAE18168.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 437

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +        + ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG     +G+P 
Sbjct: 85  LEVIRYHDFLGHIINQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPA 143

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +        D+  FE       E R       P  A++T I   H   F  ++++ +A  
Sbjct: 144 S--------DYFAFEA-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKDVDDVFNAFQ 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+   ++K   I    DD+    ++A         +Y +G S   D      +   + + 
Sbjct: 191 EMAHNVKK--AIIAWGDDTHLRKIEADV------PVYYYGFSNKDDVYADNLEISEKGTK 242

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V  +G+  +       G H   N L  + I  + + ++D   +AL  F   + R    
Sbjct: 243 FDVYFKGEYFDTFLSPQFGDHNILNALSVITISYLESLNIDNIKEALETFGGVKRRFNET 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +     G   L+D+ Y  +P  + A I    +  P+ +   IAV          +Q+F  
Sbjct: 303 KV----GNQVLVDD-YAHHPREISATIETARKKYPNKD--VIAVF--QPHTFSRTQAFLG 353

Query: 391 DLAEVLSLYNISHVW-LSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           + AE LSL + + +  + G        L ++D + R       +  +     ++      
Sbjct: 354 EFAECLSLADKTFLCEIFGSIRENSGNLTIQDLVQRIDGATLID--EESVNALEQY--SD 409

Query: 445 DVVVVKSSNSCG------FYRL 460
            V++   +            ++
Sbjct: 410 AVILFMGAGDIQKIQRAYMEKI 431


>gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 507

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 151/450 (33%), Gaps = 63/450 (14%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI+ DSR + P + FF  KG       ++  A + GA   V   +     G  +I V  
Sbjct: 30  SGITYDSRKVRPGDMFFC-KGSFEPA--YLKAAREAGATTYVAEREYPEGTGMTAIIVTN 86

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   +  L+        ++   II ITG+ GKT++       L+        + S  + I
Sbjct: 87  VTRAMAVLSA-TYYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFSTIDRI 145

Query: 148 GVPLTLAR------------MPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVI 189
             P    +            +  D+   +        + +S    +R   + ++    + 
Sbjct: 146 VGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYDCGIF 205

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KT 246
             I P H+        E+    K ++   +  +    ++ D + FE +   + A    K 
Sbjct: 206 LNITPDHIGRNEHKDFEDYLHCKLQL---MVNSKRCIIDADTNRFEDVYGAARATTDPKQ 262

Query: 247 IYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQNM 296
           IY F         D+ ++  +     +   +            + E   +  G +   N 
Sbjct: 263 IYLFSADPANGGVDYTIKNAEDDLINNRFTIAATSSTKPALAITGEYDLNVAGDYNQSNA 322

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +   ++  AD D A+K LS        G+    A+       +D  Y  N AS++A 
Sbjct: 323 TAAIIAAALAGADRDAALKPLSEIVIP---GRMEYLAIPGHGVVFVD--YAHNYASLRAL 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  +     + +G+ I V+G     G+   S      + LS       +L+         
Sbjct: 378 LKFVKH--QYHDGKAIVVVGSP---GDKGISRRAGFGKALSE-QADVAYLTTDDPG---- 427

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                      E    +   I + +  G V
Sbjct: 428 ----------FEDPQDIIAQIMAHIEPGTV 447


>gi|170017481|ref|YP_001728400.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20]
 gi|229620040|sp|B1MZK4|MURC_LEUCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169804338|gb|ACA82956.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20]
          Length = 444

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 35/303 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+ G+ GKT+T  +L   + +I  T   IG             R   +  F + E
Sbjct: 103 QTTSIAVAGAHGKTSTTGLLAHVVKNIAPTSYLIGDG---------TGRGVPNSQFFVVE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   +  I ++  A ++    ++K   IF  
Sbjct: 154 A-----DEYRRHFKDYAPDYAILTNIDFDHPDYYEDINDVTRAFSDFANHVKKD--IFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD +  LL+ K+       +Y +G  S+  DF     ++ ++ S  +V  +G+S+ E  
Sbjct: 207 GDDPYLRLLQPKAD------VYYYGTNSEQDDFVATNIRKSTQGSHFDVVFRGQSLGEFS 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +  +   D+      L  +   + R    + A      T+ID+
Sbjct: 261 VPLFGQHSILNALSVIAVAYMEKMDLSLIKSFLMTYQGVKRRFSEKQIA----DITVIDD 316

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  + A +    Q  P+ +   IA+            ++  + A+ L       V
Sbjct: 317 -YAHHPTEIDATLDAARQKYPNKQ--IIAIF--QPHTYSRVIAYKDEFAKSLE--AADKV 369

Query: 405 WLS 407
           +L+
Sbjct: 370 YLA 372


>gi|58337842|ref|YP_194427.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           NCFM]
 gi|227904491|ref|ZP_04022296.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           ATCC 4796]
 gi|68565671|sp|Q5FIS8|MURC_LACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58255159|gb|AAV43396.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus acidophilus
           NCFM]
 gi|227867746|gb|EEJ75167.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           ATCC 4796]
          Length = 437

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 126/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L   L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVDDSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    K+ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKTTTGSSFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNATAVIAVAYTEKVPMDAIREGLLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYIT 374

Query: 408 GFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A         + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDITSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|260551075|ref|ZP_05825279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
 gi|260405842|gb|EEW99330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
          Length = 455

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 124/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLMGLMAKDAGKKVAIGGNLGRP-----ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     + E   AK  IF+G++K   
Sbjct: 162 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLEYHQAKHRIFQGVKK--- 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 215 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGILRDADGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKHFKGLEHRCEYVKTVH---DVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + +      + +   +    
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFTP-LRSSIEKYAKV---- 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 382 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVEICQRETQAEDVVLL 427


>gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 532

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 138/395 (34%), Gaps = 32/395 (8%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL         G       V  ++ D+R +A  + F A+ G    G  F   AV +GA
Sbjct: 18  VRDLAHTFDLRVAGAAGRDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGA 77

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTK 123
             V+ + D  A +G L++PV    +    L      V        T  A+TG+ GKTTT 
Sbjct: 78  AAVLTDDDGAALLGDLAVPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTT 137

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGI----FEL 167
             L   L ++  T   IG+     G  +  +++                + G+     E+
Sbjct: 138 YQLDHLLRALGFTSGLIGTVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEV 197

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L   R     VR  +A  T ++  HL     ++    AKA +F        + +  
Sbjct: 198 SSHALALHR--VDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRGVVV-V 254

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD++   +   +  + + T+ +      AD+ +   +     +   V    G+++     
Sbjct: 255 DDAWGLRMAEAAQ-VPVATLRTVPDGPAADWTVSDVEPHGTGTAFTVTHKDGRTLRTSTT 313

Query: 287 GIGYHMAQNMLMTLGIVSILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-- 341
             G+    N  + L +V    A   DV  A+ A                A       L  
Sbjct: 314 LPGHFNVANAALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPR 373

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +   +  N    +A    L+ + P   GR + V G
Sbjct: 374 VVVDFAHN---TEALELALAALRPTTPGRLVVVFG 405


>gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae 2603V/R]
 gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae A909]
 gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
 gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|30316025|sp|Q8E186|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063264|sp|Q3K2P4|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 2603V/R]
 gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae A909]
 gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
          Length = 451

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 40/344 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I ITGS GKTTT  M+   L++  +     G+          + +   D D  + EL  
Sbjct: 114 LIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP---ASEVVQAANDKDTLVMELSS 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++ 
Sbjct: 171 FQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQ 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHG 287
              + L   + A    TI  F  ++  D    + KQ        +  +G+++  V     
Sbjct: 227 GISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGENIMSVDDIGV 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N L T+ +  +         + LS F   +    R +        +  ++S +
Sbjct: 275 PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVK---HRLQSLGKVHGISFYNDSKS 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  + + A+S            ++ ++    + G        D+        + H+ + 
Sbjct: 332 TNILATQKALSGFDNT-------KVILIAGGLDRGNEFDELIPDI------TGLKHMVVL 378

Query: 408 GFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
           G     +K A  ++  V YS+ +D              GDV+++
Sbjct: 379 GESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|167626976|ref|YP_001677476.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189028990|sp|B0TW67|MURC_FRAP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167596977|gb|ABZ86975.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 452

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 144/384 (37%), Gaps = 36/384 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSY 143
           V GV  +  A+    +A  ++     IA+TG+ GKTTT  +L   L  +  T    +G  
Sbjct: 83  VLGVQCLKRAM---FLALLMKDFRYSIAVTGTHGKTTTSSILATLLCKLDTTNSFVVGGV 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
             +    + +       D  + E   S    +      + P++A++T I   H+S +   
Sbjct: 140 VKYADSNIQIN----GTDRLVIEADESDASFL-----YLNPNVAIVTNIDLDHMSTYKNS 190

Query: 203 IEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            + +    A     L K     I+L  DD     L  K  +  +  I S+G + N+D ++
Sbjct: 191 YDNLLENFANF---LMKESIENIYLCVDDHGCNDLLDKYRSRVVGNIVSYGFAINSDARI 247

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             ++     +   V+ +    +      G +  QN    +     L         AL+  
Sbjct: 248 YNYRVSDNLTTFTVEYKSGKYDFELQLPGKYNVQNATACVVACLDLGFSYKDIYNALATV 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R   Y   ++     +ID+ Y  +P  + +++  +    P+   + I V      
Sbjct: 308 KGVARRFDVYDKQISSHKIPVIDD-YGHHPVEVTSSLGAVRDRYPNK--KIIHVF--QPH 362

Query: 381 MGELSQSFHID------LAE---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
               ++   ID      LA+   +L  Y+     + G     L   +P+   V  +++ D
Sbjct: 363 RYTRNRDLLIDWPKALSLADQLIILPTYSAGEQIIQGAESQDLIRNIPK---VLLADSFD 419

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC 455
            +  F++  + D  VV+++ +   
Sbjct: 420 HVLYFLEKLVDDNTVVLIQGAGDI 443


>gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
 gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
          Length = 450

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 123/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L+   K+    G+          +A+     D
Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFP---ASEVAQSVTAQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        PHIAVIT + P H+      E   +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGID----SFHPHIAVITNLMPTHIDYHGSFEAYVAAKWNIQNRMTSDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            I LN++    + L  K+ A     +  F   +  D   L       +    E+ ++   
Sbjct: 219 FIILNFNQDLAKELATKTKA----QVVPFSTVEKVDGAYLENGGLYYKG---ELIMKADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +         + L+ F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVSKLSGISNQAIKETLASFGGVK---HRLQFVDTINDVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  +  +    ++ +             GDVV++
Sbjct: 372 VKKMIILGESAPRVKRAAEKAGVSYLDAKDVADATRIAFDQASAGDVVLL 421


>gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
 gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
          Length = 450

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 127/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGQVLTAAGQNGLLSGNIGYP---ASHVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P H+      E   +AK  I + +    
Sbjct: 163 TLVMELSSFQLMGIE----SFHPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQKNMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K+ A    ++  F   +  D          E   +  + +    
Sbjct: 219 YLVLNFNQDLAKELAEKTQA----SVVPFSTLEKVD------GAYLENGLLYFRGEAVMA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  I   D +T  + LS F   +    R + A        
Sbjct: 269 ADEIGVPGSHNVENALATIAVAKIRGVDNETIKETLSAFGGVK---HRLQYADEINGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------KGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y +   +             GD+V++
Sbjct: 373 KKMVILGQSAERVKRAADKAG-VEYVDATDIADATRKAYHLAGTGDIVLL 421


>gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola]
          Length = 292

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 21/241 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I   PQ   + +S+DSR +  ++ F AIKG   DG+DFI  AV+K    ++  T     
Sbjct: 13  WIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKK 72

Query: 78  IGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
            G +    +IP+     +   ++ LA            II +TG+ GKTT  +++     
Sbjct: 73  HGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSE 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMSHLGEIRF 177
            + K  A +G+  N     L   +        I                + +S  G ++ 
Sbjct: 133 LLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSHGLVQN 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +  +I + T +   HL     +++  SAK   F    K   I LN +D + +    
Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ-HKIKKIILNANDKYAKKWLR 251

Query: 238 K 238
           K
Sbjct: 252 K 252


>gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 451

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 40/344 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I ITGS GKTTT  M+   L++  +     G+          + +   D D  + EL  
Sbjct: 114 LIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP---ASEVVQAADDKDILVMELSS 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++ 
Sbjct: 171 FQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQ 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHG 287
              + L   + A    TI  F  ++  D    + KQ        +  +G+++  V     
Sbjct: 227 GISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGENIMSVDDIGV 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N L T+ +  +         + LS F   +    R +        +  ++S +
Sbjct: 275 PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVK---HRLQSLGKVHGISFYNDSKS 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  + + A+S            ++ ++    + G        D+        + H+ + 
Sbjct: 332 TNILATQKALSGFDNT-------KVILIAGGLDRGNEFDELIPDI------TGLKHMVVL 378

Query: 408 GFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
           G     +K A  ++  V YS+ +D              GDV+++
Sbjct: 379 GESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
 gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
          Length = 440

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 134/343 (39%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+         +L  +  DV+  + E
Sbjct: 107 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----SLDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 215 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|327184054|gb|AEA32501.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1118]
          Length = 437

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 128/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGR---------GKGVPDSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ    K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D     L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L    +   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RGVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       ++ +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLNNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|167614206|gb|ABZ89709.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 476

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 149/419 (35%), Gaps = 48/419 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+      +  ++     +      +IP+    ++L  L +             IAI+
Sbjct: 79  DFIIK-----SSAILSTNPEIIYAKKNNIPILLRAEMLEILMQFKYG---------IAIS 124

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  ++                 N  I   +          + I E   S    
Sbjct: 125 GTHGKTTTTSIIADIFIESGLD---PTIINGGIIKSINSHAKLGYSRYFIVEADESDASF 181

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +      + P I +IT I   H+ ++     ++  A     + +   GT  +  D+    
Sbjct: 182 L-----YLNPKIGIITNIEDDHMDHYDNNFIKLKQAFLTFLKKIPLNGTAIVCIDNDAIC 236

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            +           I ++G +KNADF +  +KQ     ++++ ++ +  + +  +  G H 
Sbjct: 237 DILPYIKC----KILTYGFNKNADFHIYSYKQDGFIGYLQIIIKHQIKLNITLNIPGKHN 292

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYN 347
           A N    + +           I +L  F     R +       +  + +   T++ + Y 
Sbjct: 293 ALNATAAVVLAIHEKIKHYNIIASLKNFQGTCRRFEFLGKYSIKKNIIKRQPTMLIDDYG 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--------- 398
            +P  +   I+ +    P+     I +          + + + D  ++LS          
Sbjct: 353 HHPTELSETINTIRTGWPNNN--LIMIF--QPHRYTRTHNLYHDFVKILSKVDVLLILNV 408

Query: 399 YNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           Y+ +  ++ G    +L + +   +  ++++    + +   +   L   D+++++ + + 
Sbjct: 409 YSANEKYILGADSFSLYNDIKKCKKKYIYFIPDHNLILDTLIPRLNGNDIILIQGAGNI 467


>gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
 gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
          Length = 450

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 123/349 (35%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGFP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P HL      E   +AK  I + +    
Sbjct: 163 TLVMELSSFQLMGIE----AFHPEIAVITNLMPTHLDYHGSFEGYVAAKWAIQKNMTAKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  ++ A    T+  F   +  D          E   +  + +    
Sbjct: 219 FVVLNFNQDLAKDLSQQTQA----TVVPFSTQEKVD------GAYLEDGVLYFRGEAVMR 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   D  T  + LS F   +    R +          
Sbjct: 269 ADQIGVPGSHNVENALATIAVAKLRGIDNQTIQETLSAFGGVK---HRLQYVAEIEGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S     +       I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFDNANV------ILIAGG-LDRGNEFDELVPDI------TGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++   +  +  +             GD+V++
Sbjct: 373 KKMVILGESAERVKRAANQAGVTYLDATDVADATRKAYELAEPGDIVLL 421


>gi|293610054|ref|ZP_06692355.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827286|gb|EFF85650.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 448

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 122/347 (35%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 155 IVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDGDGMLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  +        + +   +    
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFGP-LRSSIEKYAKV---- 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 375 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
 gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
          Length = 445

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----ISTQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAIGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           agalactiae ATCC 13813]
          Length = 455

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 40/344 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I ITGS GKTTT  M+   L++  +     G+          + +   D D  + EL  
Sbjct: 118 LIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP---ASEVVQAADDKDILVMELSS 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++ 
Sbjct: 175 FQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQ 230

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHG 287
              + L   + A    TI  F  ++  D    + KQ        +  +G+++  V     
Sbjct: 231 GISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGENIMSVDDIGV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N L T+ +  +         + LS F   +    R +        +  ++S +
Sbjct: 279 PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVK---HRLQSLGKVHGISFYNDSKS 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  + + A+S            ++ ++    + G        D+        + H+ + 
Sbjct: 336 TNILATQKALSGFDNT-------KVILIAGGLDRGNEFDELIPDI------TGLKHMVVL 382

Query: 408 GFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
           G     +K A  ++  V YS+ +D              GDV+++
Sbjct: 383 GESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 425


>gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMD-9]
 gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus
           LMD-9]
 gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus thermophilus ND03]
          Length = 481

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 138/403 (34%), Gaps = 57/403 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR I P   FFA KG  +   +F+  AVQ G G  V   D       + IP  
Sbjct: 35  FDHLSYDSRDITPSTLFFA-KGAGFK-LEFLESAVQAGLGFYVAEKDY-----QVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY------- 137
            V D+  A++    A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVSDIKQAMSLVAQAFYQHPQDKLKLLAFTGTKGKTTASYFAFNILKQSHKPAMLSTMNT 147

Query: 138 ----ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                     N      L L RM  +         I E+       +    + +   + V
Sbjct: 148 TLDGKTFFKSNLTTPESLDLFRMMAEAVSNGMTHLIMEVSSQAY--LTKRVYGLTFDVGV 205

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  +   L+ +  + +N   + F+ +  +        
Sbjct: 206 FLNISPDHIGPIEHPTFEDYFYHKRLL---LKNSQAVIVNSGMNHFDFVAEEVA------ 256

Query: 247 IYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K+ DF  +  +      S    + +GK + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   K ++        G+        G    +D  Y  N  S+   + V   ++
Sbjct: 311 RLGASLEDIKKGIAQ---TSVPGRMEILTQANGAKVFVD--YAHNGDSLDKLLQV---VT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            H +G+   +LG     GE  +    D   VL+ Y   +V LS
Sbjct: 363 DHQKGKISLILGAPGNKGESRR---QDFGHVLNTYPEINVILS 402


>gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
 gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
          Length = 484

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 140/405 (34%), Gaps = 57/405 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D       + I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITAGLSFYVSEIDY-----GVDI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               L L RM        +   + E+       +    + +  
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAY--LTKRVYGLTF 202

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I+P H+        E+    K  + E    +  + +N     F ++K +   +
Sbjct: 203 DVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SKAVVVNSQMDHFNIVKEQVEYI 259

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLG 301
                  + ++             +E       ++GK         IG    +N +    
Sbjct: 260 PHDFYGDYSEN-----------VITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ 
Sbjct: 309 ACLRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 364 E---HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|169797488|ref|YP_001715281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AYE]
 gi|169150415|emb|CAM88312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii AYE]
          Length = 455

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 121/347 (34%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 162 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 215 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  +        + +   +    
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFGP-LRSSIEKYAKV---- 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 382 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|226323561|ref|ZP_03799079.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758]
 gi|225208245|gb|EEG90599.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758]
          Length = 173

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 11/178 (6%)

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M  N L    +   L   ++     +S      GR          G   +ID+ YNANP 
Sbjct: 1   MVYNALAGACVGMKLGLTLEEIQTGISSLKTIAGRTNLIDT----GSLLIIDDCYNANPV 56

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SMK+++ VLS  +    GR +AV+GDM E+G+     H +     +   I  +   G   
Sbjct: 57  SMKSSLDVLSTAT----GRTVAVMGDMYELGDKENELHYNTGAHAAEIGIDVICCIGELS 112

Query: 412 LALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +   A  +S  V Y +T       I++ +   D ++VK+S+   F  +I++L +
Sbjct: 113 HHAYEGAKACAKSSAVLYFKTKQDFLGKIRNVVKKDDTILVKASHGMEFPEIIDVLRQ 170


>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 445

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 121/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F   + ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEQEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  I+ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALIEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|315038910|ref|YP_004032478.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
 gi|312277043|gb|ADQ59683.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
          Length = 437

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 128/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGR---------GKGVPDSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ    K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D     L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L    +   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RGVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       ++ +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLNNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|213155698|ref|YP_002317743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|215484924|ref|YP_002327163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|301346529|ref|ZP_07227270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB056]
 gi|301512504|ref|ZP_07237741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB058]
 gi|301594847|ref|ZP_07239855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB059]
 gi|332851488|ref|ZP_08433485.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332866813|ref|ZP_08437217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
 gi|226711875|sp|B7H1N2|MURD_ACIB3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711876|sp|B7I325|MURD_ACIB5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213054858|gb|ACJ39760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|213988566|gb|ACJ58865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|332729941|gb|EGJ61272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332734421|gb|EGJ65541.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
          Length = 448

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 121/347 (34%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A  G+          L  +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T  +   +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQL----ETTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DD+    L   +  +      SFG +     Q    +      W+   LQ     
Sbjct: 208 VVFNRDDALSRPLVPDTTPMQ-----SFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R +  +           
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVH---DVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  +        + +   +    
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFGP-LRSSIEKYAKV---- 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 375 -VVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 483

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/475 (17%), Positives = 170/475 (35%), Gaps = 70/475 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + ++ DSR +     FFA KG  +   +++  A++ G    V   D       + IP  
Sbjct: 35  FSNLTYDSRKVDMSTLFFA-KGAAFKA-EYLESAIKLGLTAYVSEVDY-----QVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A+           + K  ++A TG+ GKTT        L    K  A + + N
Sbjct: 88  IVTDIKKAMAIIAKDFYGNPQDKLKLLAFTGTKGKTTAAYFAYNILQESHK-PAMLSTMN 146

Query: 145 NHIGV------------PLTLARMP---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
             +               L L +M    VD       + +S    +    + +   + V 
Sbjct: 147 TTLDGKTFFKSQLTTPESLDLFQMMSTIVDNGMTHLIMEVSSQAYLVERVYGLTFDVGVF 206

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             I+P H+        E+    K  + E    +  + +N D   F++L  +         
Sbjct: 207 LNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVIINSDMDHFDILAEQVA------- 256

Query: 248 YSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
                ++  DF   + + Q            GK + +     IG    +N          
Sbjct: 257 -----NQEHDFYGSQSENQILNSQAFTFSANGKMAGDYDIQLIGKFNQENATAAGLACLR 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L AD+    + ++        G+    +   G    +D  Y  N  S++  ++V+ +   
Sbjct: 312 LGADLTDIKQGIA---RTSVPGRMEVISHPSGAKVFVD--YAHNGDSLEKLVTVVEE--- 363

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKD 416
           H +G    ++G     G   +S   D  +V++ +    V+L+               + +
Sbjct: 364 HQKGNISLIIGA---TGNKGESRRADFGQVINNHPTLKVYLTADDPNFEDPQDICQEIAN 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEFP 469
            + RS+ +  ++    +   I+    +GD +++  K +++   Y+++N    ++P
Sbjct: 421 HVNRSVSII-ADRTKAISTAIKDCQKEGDALIIAGKGADA---YQIVNGQKTDYP 471


>gi|148259085|ref|YP_001233212.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium cryptum JF-5]
 gi|326402236|ref|YP_004282317.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium multivorum
           AIU301]
 gi|166222949|sp|A5FUL1|MURC_ACICJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146400766|gb|ABQ29293.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium cryptum JF-5]
 gi|325049097|dbj|BAJ79435.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium multivorum
           AIU301]
          Length = 479

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 147/430 (34%), Gaps = 62/430 (14%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   G   VVV       +   V +     IPV    ++LG L +L       
Sbjct: 59  GHD----AANLGNAQVVVVSTAVPRDNPEVQAARKRMIPVVRRAEMLGELMRLR------ 108

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L         I      I    T AR+    D+ + 
Sbjct: 109 ---WSVAIGGTHGKTTTTSLVAAVLEGAGLDPTVIN--GGIINAYGTNARLGGG-DWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   IAV+T + P HL ++   E + +   +    +   G   L
Sbjct: 163 EADESDGSFLR-----LPAVIAVVTNMDPEHLDHWGSAEAMEAGYRQFVSNIPFYGFAVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----- 280
             D    + +      L    + ++G S  AD +  +       +  EV+L  +      
Sbjct: 218 CIDHPGVQRM---IPDLSDHRLITYGLSPQADVRAERIMSDRNGATFEVRLSERVAGRER 274

Query: 281 --MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +G H  QN L  + I   +         AL+ F   +   +R+        
Sbjct: 275 VLAPMRLPMLGNHNVQNALAAIAIGIEMEVPEVDLRAALASFRGVK---RRFTKTGEVAG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
            T+ID+ Y  +P  + A +    Q         + PH   R   +  D C       +  
Sbjct: 332 ITVIDD-YGHHPVEIAAVLRAARQAGARDVIAVVQPHRYTRLATLFEDFC-------TCM 383

Query: 390 IDLAEVL--SLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGD 445
            D  +V+   +Y      + G    AL + L    H       + D L   I +    GD
Sbjct: 384 NDAGKVIVADVYPAGEEPIPGIDRDALVEGLRARGHKSVVSLGSPDHLAEMINAMARAGD 443

Query: 446 VVVVKSSNSC 455
            VV   + S 
Sbjct: 444 YVVCLGAGSI 453


>gi|242374030|ref|ZP_04819604.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348281|gb|EES39883.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
          Length = 437

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 141/406 (34%), Gaps = 55/406 (13%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +       +    D+ L  +        +  + T +A+TG+ GKT+T  +L+  ++  K
Sbjct: 68  NAFPDTHEEIVRAHDLKLDVIKYHDFLGHVIDQYTSVAVTGAHGKTSTTGLLSHVMNGDK 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT   IG                   D+  FE       E R       P  A++T I  
Sbjct: 128 KTSFLIGDG---------TGMGLPGSDYFAFEA-----CEYRRHFLSYHPDYAIMTNIDF 173

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  IE++  A  ++   ++K   I    DD +   L+          IY +G  +
Sbjct: 174 DHPDYFKNIEDVYDAFQDMAHNVKK--AIIAWGDDDYLRKLEVDV------PIYYYGFKE 225

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + D   +  +   + +  +V + G+  +       G H   N L  + I  +   D++  
Sbjct: 226 SDDIYAKNIQITEKGTQFDVYINGEYYDQFLSPQFGDHNILNTLSVIAISYLEKMDIENI 285

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL  F   + R    + +       ++ + Y  +P  + A I    +  P+ E   +A
Sbjct: 286 KEALETFGGVKRRFNETKVSNQ-----VLVDDYAHHPREISATIESARKKYPNKE--VVA 338

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM--- 430
           V          +Q+F  + A  LS      V+L       +  ++  +      E +   
Sbjct: 339 VF--QPHTFSRTQAFLDEFASSLSK--ADQVFLC-----EIFGSIRENTGDLTIEDLINR 389

Query: 431 --------DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                   +     ++    +  V++   +      +L+    E+ 
Sbjct: 390 IDGSALIDENSIDVLEK--FENAVILFMGAGDIQ--KLLKAYFEKL 431


>gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
          Length = 464

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 120/354 (33%), Gaps = 32/354 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGI 164
           KA ++ ITG+ GKTTT  ++     +  K +        N+ I     +  M  + D  +
Sbjct: 104 KARMVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFSSMVLAMQPN-DVAV 162

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L      +    P +++IT I P HL  +   ++  A AK  IF   +   T 
Sbjct: 163 IELSSYQL----ERSISFHPQVSLITNITPDHLDRYGQNMQRYAEAKYRIFMNQQAGDTF 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DDS  +     S         +FG     + QL K +     + + V+    +++ 
Sbjct: 219 IYNQDDSMLQAAFGASQIAVPCRSVAFGLEPLTNVQLDKRRVLVNGNMVVVRQNDGALQP 278

Query: 284 VHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +            G H   N+L  + +   L    +   +AL+ F   E    R      
Sbjct: 279 IVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMRQALTAFGGVE---HRQELVAT 335

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +M+ A+  +           I + G   +    +   H      
Sbjct: 336 IDGVEWINDSKATNVNAMRQALEAV-------PAPMILIAGGRDKGNNYATVSH------ 382

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    +  +  +G     L       + V    T+D            G+ V+ 
Sbjct: 383 LIERKVCLLIATGESREKLASFFKGKVPVIAVPTIDEAVAIAHQQAKAGESVLF 436


>gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae NEM316]
 gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
 gi|30316027|sp|Q8E6P1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
          Length = 451

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 132/344 (38%), Gaps = 40/344 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I ITGS GKTTT  M+   L++  +     G+          + +   D D  + EL  
Sbjct: 114 LIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP---ASEVVQAADDKDILVMELSS 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  ++      RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++ 
Sbjct: 171 FQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQ 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHG 287
              + L   + A    TI  F  ++  D    + KQ        +  +G+++ +V     
Sbjct: 227 GISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGENIMLVDDIGV 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N L T+ +  +         + LS F   +    R +        +  ++S +
Sbjct: 275 PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVK---HRLQSLGKVHGISFYNDSKS 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  + + A+S            ++ ++    + G        D+        + H+ + 
Sbjct: 332 TNILATQKALSGFDNT-------KVILIAGGLDRGNEFDELIPDI------TGLKHMVVL 378

Query: 408 GFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
           G     +K A  ++  V YS+ +D              GDV+++
Sbjct: 379 GESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|84495983|ref|ZP_00994837.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
 gi|84382751|gb|EAP98632.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
          Length = 488

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 136/379 (35%), Gaps = 35/379 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLT 152
           L++    A     +  +A+ G+ GKTTT  MLT+AL +  +  ++A  G         LT
Sbjct: 107 LHRSQGLAATMHDSRPVAVAGANGKTTTTSMLTVALQAADLDPSFASGG--------ELT 158

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                     G   +  +   +  FL +   P +A++T + P HL  +   + +  A A 
Sbjct: 159 GQGTNAAWTGGDVFVVEADESDGSFLVYG--PEVAIVTNVQPDHLDFYGTFDNVQRAYAS 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G +    DDS   L  A + A+G   + ++G    AD  L   +   E    
Sbjct: 217 FADSIRSDGLLVACADDS-GSLFLASNAAIGGTRVLTYGFDDTADLTLADHRADDEGIGT 275

Query: 273 EVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGK 328
              L    G +  +     G H A N        +    AD    ++ L+ F   +G  +
Sbjct: 276 TTTLRLPDGSTATMRLATPGAHNALNAAAAYLAATEGFGADAALVLEGLAGF---DGARR 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+    +    T++D+ Y  N   + A +   ++I+    GR          +   ++ F
Sbjct: 333 RFEVRGDVAGVTVVDD-YAHNAGKVAAVVRTAAEIAARRGGRLHVAF--QPHLYSRTRDF 389

Query: 389 HIDLAE---------VLSLYNISHVWLSGFHVLALKDA---LPRSIHVHYSETMDGLFLF 436
               A          +L +Y      + G     +      LP    V    T   +   
Sbjct: 390 AQGFATGLAPAHTVVLLDVYGAREQPMEGITSELIAAPLRDLPGERSVSVGGTFASVAAH 449

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           +     +GD+V+   +   
Sbjct: 450 LAEIASEGDIVLTVGAGDV 468


>gi|262376991|ref|ZP_06070217.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
 gi|262308029|gb|EEY89166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
          Length = 448

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 125/347 (36%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +  +   K  A  G+          L     D + 
Sbjct: 100 RRATDKPIVAITGSNAKSTVTTLIGLMAADAGKKVAIGGNLGRP-----ALDLTKDDPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L      T  +   +AV+  ++  HL     +    +AK  IF+G++K   
Sbjct: 155 YILELSSFQL----ETTSNLAAEVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DDS    L        +  I SFG +     Q    K      W+    +     
Sbjct: 208 VVYNRDDSLTRPL-----VPDVTPIQSFGLNAPDMNQYGILKDTDGSIWLARGRERLLKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ +  L  F   +G   R             
Sbjct: 263 TEMYMQGTHNVANALACLALGEAIGLPLESMLNTLKTF---KGLEHRCEFVKEVQGVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AA+  L        G+   +LG   + G+  ++    L++   +    
Sbjct: 320 NDSKGTNIGATLAALDGLGMAIEAQGGKVAIILGGQGK-GQDFKALRESLSKYAKVA--- 375

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L G     ++ A+  +I + +++++       Q      DVV++
Sbjct: 376 --VLIGEDRPVIEAAIAGTIELIHADSLQQAVEICQKHTQAHDVVLL 420


>gi|323127721|gb|ADX25018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 119/349 (34%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S++ I+ ITGS GKTTT  M+   L++  ++    G+        +  A      D
Sbjct: 106 AYLVSESPIVGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASEVVQKASAN---D 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I       +PHIAVIT + P HL      E+  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGID----AFKPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN +      L   + A    T+  F   +  D          E   +  +      
Sbjct: 219 YLILNANQEISAALAKTTKA----TVIPFSTQEVVD------GAYLEDGMLYFKRHPIMP 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L  + +  +     D  ++ LS F   +    R +        T 
Sbjct: 269 AANLGVPGSHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVK---HRLQLVGKIKDITF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        DL        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NKKLILIAGG-LDRGNEFDDLVPDL------RGL 372

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A    ++    +  +             GD +++
Sbjct: 373 KQMIILGESAERMKRAAEMANVPYLEAADVAAATELAFQEAQAGDTILL 421


>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
 gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
          Length = 467

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 134 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 189 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 242 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 294 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 351 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 400 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae MJ-1236]
 gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MJ-1236]
          Length = 467

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 134 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 189 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 242 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 294 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 351 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 400 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|328542967|ref|YP_004303076.1| UDP-N-acetylmuramate-L-alanine ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412713|gb|ADZ69776.1| UDP-N-acetylmuramate-L-alanine ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 468

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 150/421 (35%), Gaps = 51/421 (12%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA ++VV++ +      L       IPV    ++L  L +   A       
Sbjct: 55  IGHAAENLGGAEVLVVSSAIRRDNPELVAAREKLIPVVRRAEMLAELMRFKQA------- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L +       I      I    T ARM    D+ + E  
Sbjct: 108 --IAIGGTHGKTTTTSLIAALLDAGGLDPTVIN--GGIINAYGTNARMGAG-DWMVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    ++     +   +AV+T I P HL ++     + +A     E +   G   +  D
Sbjct: 163 ESDGTFVK-----LPADVAVVTNIDPEHLDHYGDFAGVRAAFRHFVENVPFYGFAVMCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------- 281
               + L  +      K I ++G +  AD +         +S   V+ Q +         
Sbjct: 218 HPEVQSLVGQIE---DKRIVTYGANPQADVRFTDVAMVGGRSTFSVRFQDRRTGETGTLS 274

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +V    G H   N    + +   L  D +   K L+ F   +   +R+    +     +
Sbjct: 275 NLVLPMPGLHNVANAAAAIAVAHELGVDSEAIRKGLAGFGGVK---RRFTYTGSWNGVEI 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH-IDLAE 394
            D+ Y  +P  ++A +    + +   +GR IAV+       +     + S  F+  D   
Sbjct: 332 FDD-YGHHPVEIRAVLHAARETA---KGRVIAVVQPHRYSRLASLFDDFSTCFNDADTVI 387

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           V  +Y      + G     L   L    H  V   E  + L   +      GD VV   +
Sbjct: 388 VAPVYAAGEQPIEGAGRDDLVTGLKTRGHRSVFALEGPEALAALVAEHARPGDYVVCLGA 447

Query: 453 N 453
            
Sbjct: 448 G 448


>gi|262276881|ref|ZP_06054674.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium
           HIMB114]
 gi|262223984|gb|EEY74443.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium
           HIMB114]
          Length = 463

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 132/387 (34%), Gaps = 45/387 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-IKKTYACIGSY 143
           +    D+L  L  L            I I+GS GKTT   +++  L           G  
Sbjct: 95  IIKRADMLAHLINLKKN---------IIISGSHGKTTITSLVSHLLKDNKFFPTIVNGGI 145

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            N I     L +     ++ + E   S    ++F     +   ++++ I   H+  +   
Sbjct: 146 INSIKSNAKLGKG----EWSVVEADESDGSFLKF-----KSIFSIVSNIDIEHMDYYKTT 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + + ++           G   +  DD   + L      +  K   ++G +KNA+ Q +  
Sbjct: 197 QNLINSFKFFLNKTPLLGKNIVCIDDLNIKKL---IKEIDKKNFLTYGFAKNANLQCKNI 253

Query: 264 KQCSEQSWMEVQLQ--GKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +        ++ +   GK      +  + +G H   N   T  I  +L   ++   K+LS
Sbjct: 254 RNVDMGMKFDISINSSGKKKLVKNIFINLLGKHNVLNATATFAIGLLLNIKIERIKKSLS 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F       +R    + +   +LI + Y  +P  +KA +S           + IA+    
Sbjct: 314 SFSGV----QRRLTLIYENKKSLIYDDYAHHPTEIKAVLSACKN--NFKNKKIIAIF--Q 365

Query: 379 CEMGELSQSFHIDLAE---VLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSE 428
                   S + D  +         +S V+ +G  V             L     V    
Sbjct: 366 PHRFSRIISLYKDFIKSFIYADQVLVSPVYSAGEKVKNFNHYKFCKDILLKSKTKVIRIN 425

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + D +  F++ +  +  VV+   + + 
Sbjct: 426 SKDDIENFLKKNFQNNQVVIAMGAGNI 452


>gi|298490184|ref|YP_003720361.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
 gi|298232102|gb|ADI63238.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
          Length = 493

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 137/388 (35%), Gaps = 43/388 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYA 138
            L  P+    DVL AL               IA+ G+ GKTTT  ++   L         
Sbjct: 114 ELGCPILHRSDVLAALIADYY---------SIAVAGTHGKTTTTSIIGYMLLQAGLDPTI 164

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +G   N       L     +  + + E   S    ++       P I VIT I   H  
Sbjct: 165 LVGGEVNAWEGNARLG----ESKYLVAEADESDGSLVKH-----SPAIGVITNIELDHPD 215

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NA 256
           ++  +EE+     +  +G +    +  + D         +     +K   S+      NA
Sbjct: 216 HYENLEEVVDTFQKFAQGCQ---ILVGSIDCDTVRDCFDRP-GQRLKPTISYSLHPETNA 271

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D+ +      ++ +   V  + K++ V+    +  H   N L  + +   L  +     K
Sbjct: 272 DYTVTNIDYRADGTTALVWEKAKALGVLNLRLLSRHNLSNGLAAVAVGRSLGLEFGEIAK 331

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   EG  +R+         T ID+ Y  +P+ ++A ++  + +      R +A+ 
Sbjct: 332 GIATF---EGARRRFEFRGEAAGITFIDD-YAHHPSEIRATLAA-ASLQARPGQRVVAIF 386

Query: 376 GDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVH 425
                    + +F         H DL  +  +Y+     L       L D +  +   V 
Sbjct: 387 --QPHRYSRTLTFLDQFAGSFAHADLVVLTDIYSAGEADLGQISGEQLADEIAKQHPQVI 444

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           Y  T+  +   + S+L  GD+ +   + 
Sbjct: 445 YQPTLSSIRELLLSTLRPGDLALFLGAG 472


>gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis ATCC 367]
 gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC
           367]
          Length = 504

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 143/414 (34%), Gaps = 50/414 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           V      G++ DSR +     F   KG ++   D++  A++ GA   +   D       +
Sbjct: 23  VDDTDFVGLTYDSRQVQANTLFVC-KGFNF-SVDYLHSAIENGATAYLAEEDY-----GV 75

Query: 82  SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+PV  V +V  AL+  A       ++   +I  TG+ GKTT+  + T  LS        
Sbjct: 76  SVPVILVKNVRKALSLAAQLYFDFPQNDLFVIGYTGTKGKTTSTYLTTNILSHAFPQQVA 135

Query: 140 IGSYNNHIGVP---------LTLA---------RMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + S  NHI  P         LT A         R  VD    +  + ++    +    + 
Sbjct: 136 MFSTINHIVGPKPQDQYRAHLTTAESFDLFKEMRQAVDNGQKVLVMEVASQAYLLDRVYG 195

Query: 182 VRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAK 238
           +   + +   I+P H+              K ++   L  +    +N + D F E+  A 
Sbjct: 196 LTFDVGIFLNISPDHIGVNEHPNFANYLFCKMQL---LLNSRNCIINAETDHFDEIYAAA 252

Query: 239 SHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSM-----EVVHHGIGYHM 292
             +   + I+++G ++  A   +   +     S  ++ +  + +            G   
Sbjct: 253 KVSTDPEHIFTYGFNQAQASLSITSRQATLTDSHFDLTVHDERLAALATTYDVSVPGDFN 312

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +  A V                G+             ID  Y  +  S
Sbjct: 313 QSNSAAAILASHLAGAQVADMQYG---LAHTRIPGRMESITTKHHGTVYID--YAHDWGS 367

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           M A +S L    P    R IAVLG     G+  +      A+ L+ Y     +L
Sbjct: 368 MNALLSFLHTQFPDH--RVIAVLGS---TGDKGEDRREGFAKALNDY-ADAAYL 415


>gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 513

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 165/491 (33%), Gaps = 66/491 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H LL+++   ++       + GI+ DSR +     FF           F+ +A + GA  
Sbjct: 15  HHLLKSV---ALNGDSNLNMTGIAYDSRKVTADTLFFCKGNFRPV---FLTNAKEAGAVT 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            V    +V   G  ++ V  V   +  L+        +    I+A TG+ GKTT      
Sbjct: 69  YVAEQPIVEGNGMNALIVTNVQKAMAVLSAAF-YDYPQDDLFIVAYTGTKGKTTASYFTQ 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGMSHL---- 172
             L         + S  + +  P    R   D                 E GM+HL    
Sbjct: 128 SILQDATNKKTALFSTIDRVLGPKPEDRFKSDLTTPESLDLFHDMRQAVENGMTHLVMEV 187

Query: 173 ---GEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 +   + +   +     I+P H+        E+    K ++   L  +    +N 
Sbjct: 188 SSQAYKKNRVYGLTFDVGFFLNISPDHVGPNEHPNFEDYLHCKLQL---LVNSRHCVINA 244

Query: 228 D-DSFFELLKAKSHALGIKTIYSFGKSK-------NADFQLRKWKQCSEQSWMEVQL--- 276
              +F ++  A +     + IY F  +        N DF+         +S  +V     
Sbjct: 245 QTQNFGDVYAAATTTTEPENIYLFADTSYQPAQPVNIDFRFENQAMTLAESRFKVTAVSK 304

Query: 277 ----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                G S +     IG     N    +   ++  AD+   I A       +  G+    
Sbjct: 305 KAIQLGVSGDYQLRLIGDFNESNATAAIIGAALGGADL---IAAQQGIRRLQIPGRMETL 361

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A+       +D  Y  N ASMKA +S L     + + + + V+G     G+   S     
Sbjct: 362 AVEGHGQVYVD--YAHNYASMKALLSFLQ--KEYNQPKLLVVVGSP---GDKGVSRRAGF 414

Query: 393 AEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGL--FLFIQSSL---VD 443
           A+VL+ Y    +  +          +   +   I     +T   +     I+ ++     
Sbjct: 415 AQVLNEYADRAILTTDDPGYEDPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQP 474

Query: 444 GDVVVV--KSS 452
           GD+VV+  K +
Sbjct: 475 GDIVVLAAKGA 485


>gi|309810065|ref|ZP_07703911.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169564|gb|EFO71611.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 440

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I I+GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 105 QHTSIGISGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 156 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 209 GDDTRLNNIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDTELGQFEI 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 263 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 318 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 373

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 374 PIFGSARENHGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 425

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 426 TKYEVAYEALLEQ 438


>gi|291530397|emb|CBK95982.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum 70/3]
          Length = 461

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 135/372 (36%), Gaps = 34/372 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             + ++G+ GKTTT  MLT              + +    +   L  +      G  ++ 
Sbjct: 110 KAVCVSGTHGKTTTSSMLTHM--------YLAQNIDLSTVIGGKLKAIGGSGRAGSSDVM 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +    E       + P+I++I  I   HL  F  ++ + ++  +  +    T  + +N D
Sbjct: 162 VCEACEFSNTFLHLFPNISIILNIDADHLDFFKTMDNLRASFTKFCDN--TTDILVVNGD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV-HH 286
           D     ++A   +   K I +FGK+    +     K+ S+ Q+  ++   G  +E +  H
Sbjct: 220 DEN--TMRAVKASGFDKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGNKIERISIH 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N +             +   K LS F    G G+R+      G  T++D+ Y
Sbjct: 278 VPGAHNVLNAVAACAAALATGVTPENINKGLSTFW---GAGRRFERLATIGGITVVDD-Y 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +PA + A +     +      R  AV          + +   D A  L +     V L
Sbjct: 334 AHHPAEVAATLKTAKAMQDFK--RVWAV--HQPFTYSRTYTLMDDFASALEI--ADKVVL 387

Query: 407 S---GFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
           +   G            D   +     +  T + +  ++  +   GD+++          
Sbjct: 388 TEIMGSREKNTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESGDMIITLGCGDVYKV 447

Query: 457 FYRLINLLLEEF 468
            +R+  +L E++
Sbjct: 448 AFRIEEMLKEKY 459


>gi|218134561|ref|ZP_03463365.1| hypothetical protein BACPEC_02464 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989946|gb|EEC55957.1| hypothetical protein BACPEC_02464 [Bacteroides pectinophilus ATCC
           43243]
          Length = 471

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 139/402 (34%), Gaps = 49/402 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIG 141
           IP+    ++LG +      A        + I G+ GKTTT  ML+  L ++       +G
Sbjct: 101 IPMMARAELLGQIMANYKTA--------VNIAGTHGKTTTTSMLSEILLAADADPTISVG 152

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                IG  + + R           L ++   E         P + +I  +   HL  F 
Sbjct: 153 GILKDIGGNIRIGRSD---------LFVTEACEYTNSFLSFNPTMNIILNVKEDHLDFFK 203

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            + +I ++     E L + GT+ +N D   +E        L +K I        + +  R
Sbjct: 204 DLADIRASFRRFVERLPEGGTLIINSDIEDYEYF---CKGLNVKVITVGSDPDKSTYSAR 260

Query: 262 KWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                         L+       G+   +     G H   N L  +     L   +    
Sbjct: 261 GIAYDDLGRCHYTLLKNGEPYGIGEESSIDLMVPGIHNVYNSLAAIAAALELDIPIAAIK 320

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365
           K L+ F    G  +R+         T++D+ Y  +P  +KA ++               P
Sbjct: 321 KGLAEF---YGTNRRFERKGVFNGVTVVDD-YAHHPDEIKATLAAAGHYPHKTLWVAFQP 376

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHV 424
           H   R   +L       ELS +   D   +  +Y        G     L + +       
Sbjct: 377 HLYSRTKLLLDRFA--AELSAA---DKVILADIYAARETNTYGISSEDLMNKIKALGTEC 431

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +Y  T D +  F+Q + ++GD+++   +     Y++   L++
Sbjct: 432 YYFHTFDEIEKFLQKNCINGDLLITMGAGDI--YKVGEDLVK 471


>gi|186680972|ref|YP_001864168.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc punctiforme PCC
           73102]
 gi|229620055|sp|B2J717|MURC_NOSP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|186463424|gb|ACC79225.1| UDP-N-acetylmuramate--alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 481

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 144/403 (35%), Gaps = 52/403 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYA 138
            L  PV    DVL AL               IA+ G+ GKTTT  M+   L         
Sbjct: 109 ELGCPVLHRSDVLAALIADYY---------SIAVAGTHGKTTTSSMIGYMLLEAGLDPTI 159

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +G   N       L +      + + E   S    ++       P I +IT I   H  
Sbjct: 160 LVGGEVNAWEGNARLGQ----SQYLVAEADESDGSLVKHA-----PEIGIITNIELDHPD 210

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--A 256
           ++  +EE+        +G +   T+  + D +             ++   S+    +  A
Sbjct: 211 HYDTLEEVIDIFQTFAKGCK---TLIGSIDCATVRD--------RLQPTISYSLHSDTDA 259

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D+ +      ++ +   V  +GK++ V+    +  H   N L  + +   L  +     K
Sbjct: 260 DYTVTNIDYRADGTTALVWERGKALGVLKLRLLSRHNLSNALAAVAVGRALGLEFGAIAK 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   EG  +R+         T ID+ Y  +P+ ++  ++  +++      R +A+ 
Sbjct: 320 GIATF---EGARRRFELRGEVDGITFIDD-YAHHPSEIRVTLAA-ARLQARPGQRVVAIF 374

Query: 376 GDMCEMGELSQSFHIDLAE---VLSLYNISHVWLSGF-------HVLALKDALPRSIHVH 425
                    + +F  + AE      L  ++ ++ +G              +   +   V 
Sbjct: 375 --QPHRYSRTLTFLEEFAESFTHADLVVLTDIYSAGEPNLGQITGEQLAAEIAKQHSQVV 432

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           Y  T+  +  ++  +L  GD+ +   +      ++I  ++  F
Sbjct: 433 YQPTLPSVCEYLLQTLRPGDLALFLGAG--NLNQVIPEVITAF 473


>gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 516

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 152/477 (31%), Gaps = 65/477 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +S DSR +     FF  KG  +    ++  A + GA   V         G  ++
Sbjct: 28  QTRMEAVSYDSRDVQNNSLFFC-KGAGF-RPTYLTMAKENGAIAYVAEQPYPEGTGMHAL 85

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----------TIALSS 132
            V  V   + AL   A     +    ++  TG+ GKTT+   L           T  LSS
Sbjct: 86  IVRNVSKAM-ALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSS 144

Query: 133 IKKTY--ACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +      A   ++ + +  P +L      R  VD       + +S     +     +   
Sbjct: 145 VDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYD 204

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
           +     I+P H+        E+    K ++   L  +    +N + D F ++  A +   
Sbjct: 205 LGFFLNISPDHIGVNEHPNFEDYLHCKLQL---LVNSRKCIINAETDRFADVYAAATTTT 261

Query: 243 GIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHG 287
              +IY F +         K  DF+ +  +    ++   +            S E     
Sbjct: 262 NPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQM 321

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N    +    +     +   K           G+       +    ++D  Y 
Sbjct: 322 IGDFNETNATGAIIGAGLAGMSYEDCAKG---IRHVTIPGRMETVTTQKHGLIVVD--YA 376

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
            N ASM A +  +         R I V+G     G+   S     +E L        +L 
Sbjct: 377 HNKASMLALMRFMR--REFTNPRIIVVVGAP---GDKGISRRQGFSESL-TAEADKAYLT 430

Query: 407 ---SGFH-VLALKDALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVV--KSS 452
               GF     + + +   I     ET+     +       S     DVV++  K +
Sbjct: 431 TDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGA 487


>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
          Length = 445

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 118/342 (34%), Gaps = 35/342 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS GKTT   ++              G+    + +     R     D  + EL 
Sbjct: 111 KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWVLELS 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   LN D
Sbjct: 170 SFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---DGVQVLNAD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+F   +K        + +  F     ADF L +     +Q   ++              
Sbjct: 223 DAFCRAMK-----RAGREVKWFSLEHEADFWLERETGTLKQGDEDL-----IATQDIPLQ 272

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N++  + +   +    +  ++ +  F    G   R      +     ID+S   
Sbjct: 273 GLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDDSKGT 329

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AAI+ L             +LG M +  + +                  V+L G
Sbjct: 330 NVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGVFLIG 376

Query: 409 FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + +D     +++    T++       +    GD+V++
Sbjct: 377 VDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|224372973|ref|YP_002607345.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
 gi|223589775|gb|ACM93511.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
          Length = 470

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 134/357 (37%), Gaps = 39/357 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           KLA     +    I+AIT S GKT+ K  L   L    K Y    S N   G+   +   
Sbjct: 141 KLAKEKLTKIDPKIVAITASYGKTSIKNFLYQLLEGTFKVYKTPRSVNTLKGIIKDINVD 200

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP +++  I E G    G+I  +   +    +++  I P H+  F  ++ I   K EIF+
Sbjct: 201 MPENIEIYIAEAGAREKGDILEIVEFLENEYSILGKIGPQHIEYFKTLDNIKQTKLEIFK 260

Query: 216 --GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L+K           F   +      L IK             +++  K        E
Sbjct: 261 TPKLKKG----------FSYEVPYNEKVLVIKN------------KIKNIKASLNGIEWE 298

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V++  +  +     +G   A N+ + +         V+   + +        R ++    
Sbjct: 299 VEINDRIHKFECKLLGGFNAVNVTLAIFQALEFGLSVEELKQKVLKLESIPHRLQKIEV- 357

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   +ID+S+N N   M  +  ++ +     +G++I V   + E    +   +  LA
Sbjct: 358 ---GGKIIIDDSFNGNLEGMIESYELVKE----YKGKKILVTPGIVE---ATDEQNKQLA 407

Query: 394 EVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +       V L+G  +   L + +  +  +  ++  D L   +  +   GD+++ 
Sbjct: 408 KKIDEV-FDLVILTGSINKKVLCENIVNTDKIILNDKKD-LEKILAENTKAGDLILF 462


>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica ST-640]
 gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica 020-06]
          Length = 445

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQRAGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKDKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 287

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 94/265 (35%), Gaps = 32/265 (12%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTD 73
             I       +N ++  S+ +     FF+IKG + DGH +I  A+ +GA  V    +   
Sbjct: 14  KHIFGPASQTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVAVFGTSIEKL 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALS 131
            + S          VDDV   +   +      +   I  I +TG+ GKTT    +   L+
Sbjct: 74  RLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLT 133

Query: 132 SIKKTYACIGSYNNH--------------IGVPLTLARMPVD-----VDFGIFELGMSHL 172
            +K     IG+                      + L ++  D      +  + E+    +
Sbjct: 134 LLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAI 193

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            + R     +   +A+ T ++  HL      E     K ++F+  +      +N DD   
Sbjct: 194 DQQR--VENIYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQAKH---AVINIDD--- 245

Query: 233 ELLKAKSHALGIKTIYSFGKSKNAD 257
           + +      L      ++    NA+
Sbjct: 246 QDMGKDLSRLFEGPKVTYSLLNNAE 270


>gi|163760789|ref|ZP_02167869.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
 gi|162282111|gb|EDQ32402.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
          Length = 474

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 92/431 (21%), Positives = 157/431 (36%), Gaps = 55/431 (12%)

Query: 47  KGPHYD-GHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKL 98
           KG     GH     A   G A +VVV+T +  S   L       +PV    ++L  L + 
Sbjct: 51  KGIEVHIGH----SAANLGDAEVVVVSTAIKKSNPELMAARERLLPVVRRAEMLAELMRF 106

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
             A         IAI G+ GKTTT  M+   L +       I      I    T ARM  
Sbjct: 107 RNA---------IAIGGTHGKTTTTSMVATLLEAGGLDPTVIN--GGIINAYGTNARMGE 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             ++ + E   S    ++     +   IAVIT I P HL ++   +   +A  +  E + 
Sbjct: 156 G-EWMVVEADESDGTFLK-----LPAEIAVITNIDPEHLDHYGTFDAARAAFRQFAENVP 209

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277
             G   +  D    + L ++      + + ++G++  +D +    +     S  +V +  
Sbjct: 210 FYGFGVMCLDHPEVQALVSRIE---DRRVITYGENPQSDVRFFNHRMDGPVSVFDVVINS 266

Query: 278 ---GKSME---VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              G+++E   +     G H   N +  + +   L    D   K L  F   +   +R+ 
Sbjct: 267 RKTGETVELKDLRLPMPGKHNVSNAVAAIAVAFELGLTPDQISKGLGQFGGVK---RRFT 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--LGDMCEM----GELS 385
              +     + D+ Y  +P  +KA   VLS      +GR IAV        +     + S
Sbjct: 324 HTGSWNGVEIFDD-YGHHPVEIKA---VLSAARDACQGRVIAVHQPHRFSRLSSLFDDFS 379

Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442
             F+  +   +  +Y      + G     L  ++    H  V   +    L   I     
Sbjct: 380 ACFNDANTVMLAPVYAAGEDPIEGIDSAHLVMSMKAGGHRDVRLVDGPSALAPIIADIAK 439

Query: 443 DGDVVVVKSSN 453
            GD VV+  + 
Sbjct: 440 PGDYVVLLGAG 450


>gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
 gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
          Length = 440

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 131/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLSGVLANAAGVKTAVGGNIGVP-----ALDLISPEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F      +   + ++  +           
Sbjct: 215 ADD--VQTFPDHAAHL---QVVTFGVEQPAQF---SVAEHQGREYLFARDNAVLASSELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +V  A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNVRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA V +   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVFATLPL-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDGDKF---MPLHPSARFYDSMESIIRSIRPELKSGDMVLL 412


>gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
 gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
          Length = 461

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 126/360 (35%), Gaps = 33/360 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    + +IAITGS GKTTT   L   L +     +  G+    +   + LA
Sbjct: 92  ISEIEFAYRYAGDSMMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                  + + EL    L  +    +  R HIA++  I P HL  +   +E  A AK  I
Sbjct: 152 ----PHAYYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHKMELYARAKMRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +  + T       +D + + L  +      + I+ F    ++D         S    + 
Sbjct: 204 TQNQQPTDYFISWIEDDWTQRLLKEPGMGAGRRIF-FSTEGSSD---DAVVASSHDGQLC 259

Query: 274 VQLQGKSMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             LQ   +E+        G H  QN L        L    +     L  F        R 
Sbjct: 260 FALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPEVIRALLETFTNVP---HRL 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +      I++S   N  S   A+  + +         I +LG     G    + + 
Sbjct: 317 EYIASIDGVDYINDSKATNINSTWYALESMRK-------PTILILG-----GTDKGNDYN 364

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           DL +++    +  ++++      L  +    I  H    +M       +     GD V++
Sbjct: 365 DLMDLVKEKVVGLIYMT-TDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGDTVLL 423


>gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
 gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
          Length = 483

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 164/477 (34%), Gaps = 65/477 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+    QG           + +S DSR + P   FFA KG  +   +F+  AV+KG 
Sbjct: 16  NFRDIAY--QGDYAYNWSGVTFDHLSYDSRHVTPSSLFFA-KGAVFKK-EFLQGAVEKGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +   D       + IP   V+D+  A++   +A     + K  I+A TG+ GKTT  
Sbjct: 72  AFYIAEKDY-----EVGIPAILVNDIKQAMSLIAMAFYDNPQDKLKILAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV---DFGIFELG 168
                      +  A + + N  +               L L  M             + 
Sbjct: 127 YFAYNIFKQS-QKPAMLSTMNTTLDGETFFKSQLTTPESLDLFEMMAQAVENGRSHLIME 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S    +    + +   + V   I+P H+        E+    K  + E    +  + +N
Sbjct: 186 VSSQAFLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVVN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVH 285
                F +L+ +  ++       +G  + +D Q++  +        +  L GK +     
Sbjct: 243 SGMDHFAILRDQVASIPHD---FYG--ELSDNQIKNSRA------FDFDLTGKLAGHYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N L        L A      + ++        G+        G    +D  
Sbjct: 292 QLIGDFNQENALAAGLACLRLGASPADIQRGIA---ETTVPGRMEVLTQTNGAKVFVD-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  +SV++Q   H  G+ I +LG     GE  ++   D   V++ +    V 
Sbjct: 347 YAHNGDSLKKLLSVVAQ---HQSGKNILILGAPGNKGESRRA---DFGAVINHHPDLEVI 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFL-FIQSSLVDGDVVVV--KSS 452
           LS           +   +   I   V      +      +Q +    D V++  K +
Sbjct: 401 LSADDPNKEDPQVICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKGA 457


>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
 gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
          Length = 440

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 107 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 215 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLVARNEAFMACAELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 445

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 140/411 (34%), Gaps = 40/411 (9%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            A  G  +DG  F    +  A+  G  ++ ++  +      +         VLG +  LA
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                R    +IAITGS GKTT   ++              G+    + +     R    
Sbjct: 103 DIVNRRGD-KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKK 160

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G   
Sbjct: 161 AGVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG--- 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD F   +K        + +  F     ADF L +     +Q   ++     
Sbjct: 214 DGVQVLNADDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGDEDL----- 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N++  + +   +    +  ++ +  F    G   R      +   
Sbjct: 264 IATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGV 320

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  +  AAI+ L             +LG M +  + +              
Sbjct: 321 VFIDDSKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKD 367

Query: 400 NISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     + +D     +++    T++       +    GD+V++
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha710]
          Length = 445

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNVDDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATKD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGKKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3
           str. Alaska E43]
 gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 460

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 38/359 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI+G+ GKTT   ML+              + +  I V   L  +  +   G  +  ++
Sbjct: 114 VAISGAHGKTTCTSMLSNIT--------LKANLDPTILVGGELDIIGGNFRIGSSDYFIT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E +       P++ VI  I   HL  +  I+EI     +  + +   G +     DS
Sbjct: 166 EACEYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPNDGYLIGYIGDS 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEV-QLQGKSMEVVHHGI 288
             + + +K+         S+G  +NAD   R      +  +  +V +   K  ++     
Sbjct: 226 RVKEILSKAKC----NTLSYGF-ENADVTARNITFNEKGCASFDVYKHNDKLFDLTLSNP 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L ++ +  I   + D  I         +G  KR+         T+ID+ Y  
Sbjct: 281 GEHNILNALSSICVSLIFDVNYDDIICG---LSECKGAHKRFEYKGEVNGVTVIDD-YAH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  +KA ++   +I  +   +   V          +++   +  +    ++   V L  
Sbjct: 337 HPVEIKATLNTSKKIPHN---KTFCVF--QPHTYTRTKTLFDEFTDAF--FDADEVVLMD 389

Query: 409 FHVLALKD------------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +    KD               + +      + D    ++++S    D+++   +   
Sbjct: 390 IYAAREKDTGLVSSNDLGVALRAKGVKCTNVHSHDEALEYLKNSAKPNDLLLTVGAGDV 448


>gi|229196429|ref|ZP_04323176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587066|gb|EEK45137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 147

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R++    +  FT+I++++NA+P+SMKAAI  L +++ +   +++ V+GDM 
Sbjct: 1   MQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYK--KKMIVIGDML 58

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLF 436
           E+G+  +++H ++ ++L+  +I +V+  G     + +   ++ H   V   +    +   
Sbjct: 59  ELGKKGETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYHAGKVQSFDNKAEIAEE 118

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +   DVV++K S       ++   +
Sbjct: 119 VLKVVTKKDVVLLKGSRGMALEEIVQKWM 147


>gi|313884894|ref|ZP_07818646.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619585|gb|EFR31022.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 443

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 132/361 (36%), Gaps = 51/361 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T IA++GS GKT+T  +L+  +S I+ T   IG              +          
Sbjct: 103 NYTSIAVSGSHGKTSTTGLLSHVVSHIQPTSYLIGDGTGFGDEAANYFALEA-------- 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A+IT +   H   +  I+ +  A  + F      G +   
Sbjct: 155 ------CEYRHHFLAYSPDYAIITNVDFDHPDFYPSIDAVFDA-MQTFANQTHKG-VIAC 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VH 285
            +D +   L+AK        ++ +G S + +    K ++  E S  +V + G+     V 
Sbjct: 207 GEDEYLRKLEAKV------PVHFYGFSHDNEVYADKIERTPEGSQFDVYINGEFYHHFVL 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + ++++   D D   + ++ F   +    R   A      TLID+ 
Sbjct: 261 PAFGQHNILNALAVITVLNLEGFDKDLVAQHIASFPGVK----RRFSARKVNNLTLIDD- 315

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P+ ++A I    Q  PH   R +AV          + +   +  + LSL     V+
Sbjct: 316 YAHHPSEIRATIDAAQQKFPHK--RIVAVF--QPHTFSRTIALLDEFGKALSL--ADDVY 369

Query: 406 LSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L               +  L   +P+++ +  ++ +  L  +        +V++   +  
Sbjct: 370 LVDIFHSAREHDGAVTIQDLAAKVPKNVEIISNQHLSPLMDY------TDEVLLFMGAGD 423

Query: 455 C 455
            
Sbjct: 424 I 424


>gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMG 18311]
 gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus CNRZ1066]
 gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus LMG 18311]
 gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus CNRZ1066]
          Length = 481

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 138/403 (34%), Gaps = 57/403 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR I P   FFA KG  +   +F+  AVQ G G  V   D       + IP  
Sbjct: 35  FDHLSYDSRDITPSTLFFA-KGAGFK-LEFLESAVQAGLGFYVAEKDY-----QVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY------- 137
            V D+  A++    A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVSDIKQAMSLVAQAFYQHPQDKLKLLAFTGTKGKTTASYFAFNILKQSHKPAMLSTMNT 147

Query: 138 ----ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                     N      L L RM  +         I E+       +    + +   + V
Sbjct: 148 TLDGKTFFKSNLTTPESLDLFRMMAEAVSNGMTHLIMEVSSQAY--LTKRVYGLTFDVGV 205

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  +   L+ +  + +N   + F+ +  +        
Sbjct: 206 FLNISPDHIGPIEHPTFEDYFYHKRLL---LKNSQAVIVNSGMNHFDFVAEEVA------ 256

Query: 247 IYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K+ DF  +  +      S    + +GK + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   K ++        G+        G    +D  Y  N  S+   + V   ++
Sbjct: 311 RLGASLEDIKKGIAQ---TSVPGRMEILTQANGAKVFVD--YAHNGDSLDKLLQV---VT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            H +G+   +LG     GE  +    D   VL+ Y   +V LS
Sbjct: 363 DHQKGKISLILGAPGNKGESRR---QDFGHVLNTYPEINVILS 402


>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
 gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
          Length = 467

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 134/343 (39%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 134 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 189 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 242 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 294 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 351 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I++ L  GD+V++
Sbjct: 400 FGVDG---HQFMPLHPSARFYDSMESIIRSIRTQLKSGDMVLL 439


>gi|312984120|ref|ZP_07791467.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           CTV-05]
 gi|310894474|gb|EFQ43549.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           CTV-05]
          Length = 437

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 128/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   L  +  T   IG             +      F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVAGSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F    +  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ  + ++ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATQIEKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       ++   K L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNATAVVAVAYTEKVPMEDIKKGLPSFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
 gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
          Length = 481

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 156/459 (33%), Gaps = 63/459 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + +S DSR+++P   FFA KG  +   +F+  A++ G    V   D       + I
Sbjct: 32  DVQFDALSYDSRTVSPTTLFFA-KGLAFKK-EFLEKAIEAGLAFYVSEIDY-----EVDI 84

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--AC 139
           P   V D+  A++   +      + +  ++A TG+ GKTT        L    K    + 
Sbjct: 85  PAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFTGTKGKTTAAYFAFNILKQSHKPAMLST 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFL---THLVRPHIA 187
           + +  +      +    P  +D           GMSHL        +L    + +   + 
Sbjct: 145 MNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMSHLIMEVSSQAYLVKRVYGLTFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + +    +  + +N     FE++K +       
Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYHKRLLMDN---SRAVIVNAGMDHFEVVKEQVS----- 256

Query: 246 TIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                  SK+ DF       Q S+ +  +    GK +       IG    +N +      
Sbjct: 257 -------SKDHDFYGPTSENQISQSAGFDFTATGKLAGHYDIQLIGGFNQENAIAAGLAC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A ++     ++        G+        G    +D  Y  N  S+K  I V+ + 
Sbjct: 310 LRLGASLEDIHTGIAQ---TNVPGRMEVLTQQNGAKVFVD--YAHNGDSVKKLIDVVLE- 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSI 422
             H  G+   +LG     GE  +    D   +L+ Y    V L+          A+   I
Sbjct: 364 --HQTGKVFLILGAPGNKGESRR---KDFGLLLNDYPQIEVILTADDPNREDPAAIAEQI 418

Query: 423 HVH------YSETMDGLFLFIQSSLVD-GDVVVV--KSS 452
             H      +    +       S      D V++  K +
Sbjct: 419 RAHMTRPSNFILDREEAIRTAMSQTSSTKDAVIIAGKGA 457


>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
 gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
          Length = 440

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF   E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +    ++  L    + +FG    A F      Q   + ++    +         
Sbjct: 215 ADD--TQTFPDRAAHL---QVVTFGVEHAAQF---SVAQHQGREYLFAHDEAVMACDELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +  ++      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVVDNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDGDKF---MPLHSSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|303232778|ref|ZP_07319463.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
 gi|302481264|gb|EFL44339.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
          Length = 503

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 126/379 (33%), Gaps = 42/379 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L   A  IA+ G+ GKTTT  M+   L  +             I             D+
Sbjct: 143 YLSLHAKTIAVAGTHGKTTTSSMIATMLDHMGDD---PSFLIGGIVEEYKTNGRSGKSDY 199

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S    +      + PH+AVIT I   HL ++   + +    A   + +   GT
Sbjct: 200 FVCEADESDGSFM-----YLNPHVAVITNIEADHLDHYKTFDNLTRTFAAFMDLVGSDGT 254

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQ-GKS 280
           + +  D+     L   S     + + ++G     D+         +  +  +V+   G+ 
Sbjct: 255 VVICGDNPTCRALAQASS----RHVVTYGFDATCDYVCTLGANTHTITNSFQVRCPSGEE 310

Query: 281 MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + +      G H A N    +     L  DV  A KAL  F   +G  +R+         
Sbjct: 311 LAITLTANPGTHNALNATAAIAAAGALGLDVYAAAKALCTF---KGAHRRFTHMGTWNDI 367

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D+ Y  +P  +KA ++    +      R + V          +Q+   + A+     
Sbjct: 368 CVVDD-YGHHPTEIKATLAAAKNLQ---FKRIVCVF--QPHRYTRTQALMNEFADAFVDA 421

Query: 400 NI---------SHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           ++             + G     +   + +   S           +   +   L  GD++
Sbjct: 422 DVVIVTDVFSAGETPIPGVTGQHVAQLIAKRHPSCITESIPQKKAVVNRLIELLQPGDLL 481

Query: 448 VVKSS------NSCGFYRL 460
           + + +       S    R+
Sbjct: 482 ITQGAGDVVSIGSSYLERV 500


>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 107 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 215 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 450

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 119/347 (34%), Gaps = 31/347 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA++IAITGS GK+TT  +    L +        G+        +    +  + ++ + 
Sbjct: 100 TKASLIAITGSNGKSTTTHLAYHLLKAGGLNVGIAGNIGTSFARKV----LLEEHNYYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
           EL    L  ++      +  IA I  I P HL  +   +    +AK  I   + K G   
Sbjct: 156 ELSSFQLEHLQTF----KADIACILNITPDHLDRYDNQLNNYIAAKFRILRNMIKEGYFI 211

Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            N DD+   E L  ++  L      S  +S +    +              QL       
Sbjct: 212 YNQDDTNIREYLVKQTTNLPQLYPISLTQSTHHGAYVENNHLHFVGDNYNFQLP----TQ 267

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N +  + I S+L     + +  L  F   +G   R     N    +  +
Sbjct: 268 TLPLLGKHNIYNTMAAISIASLLGLSYASILDGLRTF---KGLPHRMEWIANVNQVSFYN 324

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S   A+   +          I  +    + G        ++ + +   ++  
Sbjct: 325 DSKATNVESAAVALESFTS--------PIIWIAGGYDKGND-----YNVLKPIVKNSVKA 371

Query: 404 VWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G     +  A   S I ++ ++ M        +     D+V++
Sbjct: 372 LICLGKDNQTICKAFKESNIPIYETQVMQEAVSLAYTLAKPQDIVLL 418


>gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
 gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
          Length = 440

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 129/343 (37%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLSGVLANAAGVKTAVGGNIGVP-----ALDLISPEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     ++          + +FG    A F      +   + ++  +           
Sbjct: 215 ADD-----MQTFPDHAAHLQVVTFGVELPAQF---SVAEHQGREYLFARDNAVLASSELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +V  A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNVRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA + +   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPIFATLPL-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDGDKF---MPLHPSARFYDSMESIIRSIRPELKSGDMVLL 412


>gi|153951182|ref|YP_001398284.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938628|gb|ABS43369.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 475

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 134/361 (37%), Gaps = 35/361 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L    +     +      II IT S GKT+ K  L   L    K+Y    S N  +G+  
Sbjct: 139 LHYKKQAKAKLKANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVA 198

Query: 152 TL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   +  D    I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K
Sbjct: 199 DINTNLSQDAQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTK 258

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E                      L + +     K I  +      D +L       E  
Sbjct: 259 LEALNSKRLEKAF-----------LHSSTQKKEDKLISLY------DDKLNLIHSSLEGL 301

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V ++ KS +     +G   AQN+ + +         ++   K +   +  E R +  
Sbjct: 302 EFRVNMESKSYDFKSQILGDFNAQNLCVCILCAHYFDIKLEKIQKQVLNINSVEHRLQ-- 359

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              L++    +ID+ +N N   M  +     ++  + +GR++ V   + E+   S+  +I
Sbjct: 360 --VLSREPKFIIDDGFNGNFKGMSTS----YELCKNYKGRKVLVSPGIVEV---SEEENI 410

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVV 448
            LA++++        +S        +   R + +     +    L   +     +GD+++
Sbjct: 411 KLAKIINEC-FDLAIIS---AQINAEIFKRELKIPTIILKEKSELIQTLAKETKNGDLIL 466

Query: 449 V 449
            
Sbjct: 467 F 467


>gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
 gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
          Length = 440

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 131/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLSGVLANAAGVKTAVGGNIGVP-----ALDLISPEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F      +   + ++  +           
Sbjct: 215 ADD--VQTFPDHAAHL---QVVTFGVEQPAQF---SVAEHQGREYLFARDNAVLASSELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +V  A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNVRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA V +   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVFATLPL-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDGDKF---MPLHPSARFYDSMESIVRSIRPELKSGDMVLL 412


>gi|169335453|ref|ZP_02862646.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258191|gb|EDS72157.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 127/380 (33%), Gaps = 35/380 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R     IA++G+ GKTTT  ++++  L++       IG     I     +     D D+ 
Sbjct: 107 RYYKRTIAVSGTHGKTTTSSLMSLVFLNADLDPSISIGGTLKKINGNSRVG----DSDYF 162

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + E        +       R  +  I  I   HL  F  GIE+I  +  +  E   K G 
Sbjct: 163 VIEACEFVDSFLH-----SRHFVGTIQNIEKDHLDYFTGGIEQIKESFRKFAEITPKDGM 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
           + +N DD     +           I   G S + DF  +        +   +V   G+  
Sbjct: 218 LVVNGDDENVLDILDGLEC----KIVKAGLSDSNDFVAKNITYDKFGNPNFDVYKGGEFY 273

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +  G H   N L  + +      D +    +   F    G  +R+         T
Sbjct: 274 HKFELNIPGEHNVLNALSVVAVSDFFMIDKEVINDSFKEFT---GAKRRFEKRGIVNDIT 330

Query: 341 LIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           +I++ Y  +P  +K  I                PH   R   +  +  E  + +      
Sbjct: 331 VIED-YAHHPTELKVTIDACKNYEHNKLFVIFQPHTYSRTFLLFDEFVEAMKGADEL--I 387

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L ++ S    +   +    + A K     +I          +  ++ ++   GD V+V  
Sbjct: 388 LNDIYSDREDNEWNIYSEDI-ANKVIEKYNIPSRVISEFSDIRDYVVNNAKPGDFVLVAG 446

Query: 452 SNSCGF--YRLINLLLEEFP 469
           S S     Y ++  L E + 
Sbjct: 447 SQSINQVAYDIVEKLKEVYK 466


>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
 gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
          Length = 444

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 111 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 166 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 219 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 270

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 271 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 328 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 377 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 416


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 158/437 (36%), Gaps = 59/437 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIP-----------VFGVDDVLGALNKLAVAARLR 105
           I   V KGA  +  +           I            +  V   L  L++  + A L 
Sbjct: 42  IDKLVAKGARYLQGHDKHHIPEDCTIIYGSGIAKDNVEYLEAVRKQLPILHRSELLAFLM 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            + T I ++GS GKTT   ++T    + KK     IG  N      L+L       ++ I
Sbjct: 102 QEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYAIGGLN-----SLSLNGYSGSSEYFI 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E   S      +L     P +AV+T +   HLSNF    E++A    E    +E     
Sbjct: 157 AEADESDGSLKHYL-----PKVAVVTNLDNEHLSNFEGSKEKLALTIEEFTRKVEDPRLC 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
           F N D    + LK +          S+G S++ + ++  + Q   +S   +   GK   +
Sbjct: 212 FYNGD---CQELKGRISGT------SYGFSQDCNLRIHSYYQDGWRSLFSLSFLGKDYLD 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + IG H   N  + +GI   L  D ++  +AL  F   + R +R   +       L 
Sbjct: 263 IDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFSGIQRRMERKNVSEK----FLF 318

Query: 343 DESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            E Y  +P+ +   +  L              PH   R    L D  +  + +       
Sbjct: 319 FEDYAHHPSEISCTLRGLRDAVGLRRIVAICQPHRFSRLQYCLEDFYKAFQDADE----- 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVK 450
             +  +Y+     L       L + +  S HV   Y    D +  ++Q  +   DV +  
Sbjct: 374 VILTDVYSAGETALDLPSPEKLAETISLSSHVQCSYVP-YDNIIPYLQQEIRVHDVCI-- 430

Query: 451 SSNSCG-FYRLINLLLE 466
            S   G  Y + N L +
Sbjct: 431 -SLGAGNIYTVGNALKD 446


>gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae NEM316]
 gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
 gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
          Length = 484

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 139/405 (34%), Gaps = 57/405 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D         I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITAGLSFYVSEIDY-----GADI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               L L RM        +   + E+       +    + +  
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAY--LTKRVYGLTF 202

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I+P H+        E+    K  + E    +  + +N     F ++K +   +
Sbjct: 203 DVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYI 259

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLG 301
                  + ++             +E       ++GK         IG    +N +    
Sbjct: 260 PHDFYGDYSEN-----------VITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ 
Sbjct: 309 ACLRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 364 E---HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|312143936|ref|YP_003995382.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904587|gb|ADQ15028.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 453

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 157/438 (35%), Gaps = 47/438 (10%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           + +   K  +  G D I+         +  N   + +  +  I +    ++L  L +   
Sbjct: 52  DIYLGHKKENIVGADLIVKT-----SAIPENNPEINAAQNNRIKIIERAEMLAYLMR--- 103

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     IAI G+ GKTTT  ML   +++  K  A        I V   L  +  ++
Sbjct: 104 ------NKKTIAIAGTHGKTTTTAMLASIMTAADKDPA--------IMVGGYLEDIKGNI 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E  ++   E         P++ ++T +   H   +  + E  +      +  EK 
Sbjct: 150 SDGKGEYFITEADESDGSFLYFDPYLLLLTNLELDHPDYYKDLAEFKAIFKRFADKNEKK 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGK 279
             +  N DD   + L         K   +F   KN D+ ++       +S  +  Q    
Sbjct: 210 ALVLYNGDDKNLKDLFK-----NRKKTKAFSL-KNYDYSVKNISYDKNKSSFDFYQADNF 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M++     G +   N    +     L  +     KAL  F   +G G+R+         
Sbjct: 264 LMKINLSSAGEYNIYNAAAAVSTALELDIETKFIKKALKTF---KGVGRRFELKAKINNG 320

Query: 340 TL-IDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCE----MGELSQSF-HID 391
           T+ + + Y  +P  +KA +  + Q+   G  R  AV            + E S SF   D
Sbjct: 321 TVDVVDDYAHHPTEIKALLKAVKQM---GYSRITAVFQPHRFSRTKKFLKEFSYSFVDAD 377

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  +++ S  +     +      + +  +  V Y    D + L ++ +L+ G++++ 
Sbjct: 378 FVYLTDIFSASEQYKETISMEKFSQEIEKHSNTEVKYLADFDKIALQLKENLISGEIILT 437

Query: 450 KSSNSCGFYRLINLLLEE 467
             +       + + L+++
Sbjct: 438 IGAGDVN--EICDKLIDD 453


>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
 gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
          Length = 450

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 129/351 (36%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELASKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKA-DVSYVDATDIADATRKAYELATQGDVVLL 421


>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
 gi|30316132|sp|Q9KPG5|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
          Length = 440

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 107 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 215 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
          Length = 445

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 119/360 (33%), Gaps = 37/360 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+     A   + A IIAITGS GKTTT  ++   L +        G+        +   
Sbjct: 88  LSSEIEFASEFTDAKIIAITGSNGKTTTTSLIYYILKNDGLNVGLGGNIGYSFAKQV--- 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + ++ + E+    L +I+      RP+I+++  ++  HL  ++   EE A AK  I
Sbjct: 145 -ADENHEYYVLEVSSFQLDDIQNF----RPYISLLLNLSQDHLDQYNYNYEEYALAKFRI 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSEQS 270
            E  E       N DD   + L  K        +  F   +      F          + 
Sbjct: 200 AENQENDNFFIYNKDDEMSKNLLEKLEIKA--KMIPFSTKEKLQEGGFVNEDEIVVKMKD 257

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +++           +G H   N L       IL  + ++   +L  F   E    R 
Sbjct: 258 EFSMKVDE------LSLLGNHNVANSLAASIAGKILEINNESIRHSLMTFQAVE---HRL 308

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   N  +   A+  +   +    G            G    + + 
Sbjct: 309 EFVTEIDGVKYINDSKATNVNATYYALESMKTPTVWIVG------------GLDKGNDYT 356

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++ E L    +  +   G     + D         Y + +M+      +S    GD V++
Sbjct: 357 EI-EDLVKRKVKAIVCLGIDNKKIIDFFKDKKEFIYDTSSMEEAVRISKSLAKKGDTVLL 415


>gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae P1031]
 gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae P1031]
          Length = 481

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I P H+     S  E+    K  + E    +  + +N 
Sbjct: 187 SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHSSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
 gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
          Length = 445

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     E   ++   +       
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLER-----ETGRLKQDDEDLIATQN 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLQREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKDKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
 gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
          Length = 444

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DVD  + E
Sbjct: 111 DTPVIAITGSNGKSTVTDLSGMLANAAGVKAAVGGNIGVP-----ALDLISPDVDLYVLE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 166 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 219 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 270

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 271 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 328 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 377 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 416


>gi|241667549|ref|ZP_04755127.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876094|ref|ZP_05248804.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842115|gb|EET20529.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 452

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 146/384 (38%), Gaps = 36/384 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSY 143
           V GV  +  A+    +A  ++     IA+TG+ GKTTT  +L   L  +  T +  +G  
Sbjct: 83  VLGVQCLQRAM---FLALLMKDFRYSIAVTGTHGKTTTSSILATLLCKLDTTSSFVVGGV 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
             +    + +       D  + E   S    +      + P++A++T I   H+S +   
Sbjct: 140 VKYADSNIQVN----GTDRLVIEADESDASFL-----YLNPNVAIVTNIDLDHMSTYKNS 190

Query: 203 IEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            + +    A     L K     I+L  DD     L  K  +  +  I S+G + N+D ++
Sbjct: 191 YDNLLENFANF---LMKESIENIYLCVDDHGCNDLLDKYRSRVVGNIVSYGFAINSDARI 247

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             ++     +   V+ +  + +      G +  QN    +     L    +    AL   
Sbjct: 248 YNYRVSDNLTTFTVEYKSGNYDFELQLPGKYNVQNATACVVACLDLGFRYEDIYNALVTV 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R   Y   ++     +ID+ Y  +P  + +++  +     +   + I V      
Sbjct: 308 KGVARRFDVYDKQISSHKIPVIDD-YGHHPVEVTSSLGAVR--DKYPNKKIIHVF--QPH 362

Query: 381 MGELSQSFHID------LAE---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
               ++   ID      LA+   +L  Y+     + G     L   +P+++    +++ D
Sbjct: 363 RYTRNRDLLIDWPKALSLADQLIILPTYSAGEQIIQGAESQDLIRNIPKAL---LADSFD 419

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC 455
            +  F++  + D  VV+++ +   
Sbjct: 420 HVLYFLEKLVDDNTVVLIQGAGDI 443


>gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
 gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
          Length = 514

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 162/489 (33%), Gaps = 63/489 (12%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           PL T   L +A     I   P      V G ++ ++ + P + F A+ G    G DF   
Sbjct: 17  PLATL--LARA-DARLIAGSPDAAELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQ 73

Query: 60  AVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
           AV  GA  V+ +       ++    +P+    D   AL ++   +      + +++ +TG
Sbjct: 74  AVAAGAVAVLTDAAGAERPALRDAGVPILVHPDPRAALGEIAAWIYGEPSLELSVLGVTG 133

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------------RMPVD 159
           + GKTTT  ++   L +   T   IG+    I     ++                 +   
Sbjct: 134 TSGKTTTSYLVDAGLQAAGLTTGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVMLERG 193

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           V     E+    L   R   +  R  +   T ++  HL     ++E  +AK+ +F+G   
Sbjct: 194 VTHVPMEVSSHALALGR--VNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDGRST 251

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQ-LQ 277
              + +  D ++ + L             +      A ++    +   +      +    
Sbjct: 252 HEVVVV--DSAWGQALLT-----PQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPD 304

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G          G     N ++   I+S     ++  +   +     +  G+  R  + Q 
Sbjct: 305 GARAAARIPLPGEFNVANAVLAAAILSTAGVSLEHIV---AGLAQVQVPGRMERVHVGQE 361

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D  Y   PA++   +  L       EGR I VLG     G+   +    + E  +
Sbjct: 362 FTAVVD--YAHKPAAVAQGLDALRA---RTEGRIITVLGC---GGDRDTAKRPIMGEAAA 413

Query: 398 LYNISHVWLSG----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDG 444
             +   +            A++ A+              +              S    G
Sbjct: 414 RRSDVLIVTDDNPRSEDPAAIRAAMLAGARSVGPAEGGEILEIGDRREAIAHAVSLAGPG 473

Query: 445 DVVVV--KS 451
           D+V +  K 
Sbjct: 474 DIVFLAGKG 482


>gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
 gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
          Length = 440

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 132/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLSGVLANAAGVKTAVGGNIGVP-----ALDLISPEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F + + +      ++  +           
Sbjct: 215 ADD--VQTFPDHAAHL---QVVTFGVEQPAQFSVAEHQGHE---YLFARDNAVLASSELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +V  A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNVRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA V +   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----VEGQLYLLVGGVGKGADFTP-----LAPVFATLPL-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDGDKF---MPLHPSARFYDSMESIVRSIRPELKSGDMVLL 412


>gi|149194595|ref|ZP_01871691.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
 gi|149135339|gb|EDM23819.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
          Length = 469

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 133/348 (38%), Gaps = 41/348 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
               II ITGS GKT+ K  +   L    K Y    S N   G+ L +   +P D +  I
Sbjct: 151 INPKIITITGSYGKTSIKNFVYQLLKDDFKAYKTPRSVNTIKGIILDINTSLPEDTEIYI 210

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGT 222
            E G    G+I+ +   +  H A++  I P HL  F  IE I   K E+FE   L K   
Sbjct: 211 TEAGARERGDIKTIVKFLENHYAILGKIGPQHLEYFKTIENIEKTKLEVFESNNLIKG-- 268

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +YD  + E +                       ++   K   E+   ++++ G+   
Sbjct: 269 --FSYDIPYRENVIKIKD------------------KIHNIKATLEKLEWDLEINGELHH 308

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              + +G   A N+ + +        D++T  + +    P   R ++       G   +I
Sbjct: 309 FECNILGEFNAINISLAIYQALEF-LDIETIKEKVLKLEPIPHRLQKIEV----GGKIII 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+N N   M  +  ++        GR+I V   + E  E     +I LA+ ++     
Sbjct: 364 DDSFNGNIEGMLKSFKLIKT----HPGRKIIVTPGIIEGNEN---LNIKLAKAINKT-FD 415

Query: 403 HVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++G  +   L D +  +I     +    L   +      GD+++ 
Sbjct: 416 LAIITGQINKKTLCDNI--TIEKIVLKDKKNLEKILADVTGSGDLIIF 461


>gi|312875020|ref|ZP_07735038.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2053A-b]
 gi|311089415|gb|EFQ47841.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2053A-b]
          Length = 440

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I ++GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 105 QHTSIGVSGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 156 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 209 GDDTRLNNIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDIELGQFEI 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 263 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 318 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 373

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 374 PIFGSARENQGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 425

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 426 TKYEVAYEALLEQ 438


>gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae 2603V/R]
 gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 2603V/R]
          Length = 484

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 140/403 (34%), Gaps = 53/403 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V  TD         I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITAGLSFYVSETDY-----GADI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           + N  +               L L RM     +       + +S    +    + +   +
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLIMEVSSQAYLTKRVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + E    +  + +N     F ++K +   +  
Sbjct: 205 GVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYIPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                + ++             +E       ++GK         IG    +N +      
Sbjct: 262 DFYGDYSEN-----------VITESKAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLAC 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ + 
Sbjct: 311 LRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVEE- 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 365 --HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|167647625|ref|YP_001685288.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter sp. K31]
 gi|189028981|sp|B0T827|MURC_CAUSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167350055|gb|ABZ72790.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter sp. K31]
          Length = 472

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 156/428 (36%), Gaps = 55/428 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           + GHD    A  +GA  +V +T + A    +       +P+    ++L  L +L      
Sbjct: 61  FIGHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLVRRAEMLAELMRLQF---- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                 +A+ G+ GKTTT  M+   L   ++  T    G  N +            + D+
Sbjct: 114 -----SVAVGGTHGKTTTTSMVAALLDAGALDPTVVNGGIINAYGTNAKV-----GEGDW 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S    ++     ++  +A++T I   HL ++   + +     +  E +   G 
Sbjct: 164 IVVEADESDGSFLK-----LKSTVAIVTNIDAEHLDHWGTFDAVKKGFQDFIENIPFYGF 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  D    + L A+      + + ++G +  A+ ++   +   E +  ++ +   S +
Sbjct: 219 AAVCTDHPEVQALTARIEN---RRLVTYGTNPQAEVRVSNIQMGPEGAQFDILVSPLSGD 275

Query: 283 VVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +V          G+H   N    + +   L  D D     L+ F   +   +R+      
Sbjct: 276 LVLYEGLKMPMAGHHNVLNATAAVAVARELGVDADAIRAGLAGFGGVK---RRFTTTGVA 332

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----GELSQSFH- 389
               ++D+ Y  +P  + A +     +S    G+ IAV+       +     E S  F+ 
Sbjct: 333 NGVRIVDD-YGHHPVEIAAVLKAARAVST---GKVIAVVQPHRFTRLRDLMTEFSSCFND 388

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            D   V  +Y      + G     L + L +         E+   L   I +    GD+V
Sbjct: 389 ADTVIVADVYTAGEAPIEGVDRDHLVEGLKKFGHRRALALESPAALPALIAAEAQSGDLV 448

Query: 448 VVKSSNSC 455
           V+  +   
Sbjct: 449 VLLGAGDI 456


>gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
 gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
          Length = 532

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 115/393 (29%), Gaps = 56/393 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
              V G+  DSR  AP   F   KG  +    ++  A+  G    + +      + +   
Sbjct: 41  SADVCGVDCDSRHAAPGHLFVC-KGNAFRA-SYLAQALAAGCVGYLCDEARAGELAAHCP 98

Query: 83  -IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYA 138
            +P     D+  A+                ++ ITG+ GK+T   ML   L S    T  
Sbjct: 99  QVPRLVSHDLRRAMALVSAEAWGHPDRNLGVLGITGTKGKSTVAYMLRSILDSDADGTRG 158

Query: 139 CIG-----------------SYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRF 177
                               S N     P     +      G    + E+    L   R 
Sbjct: 159 APHTGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAATSGLSHMVMEVSSQALKYDRV 218

Query: 178 LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +   +   +A    I   H+S       E+   +K  IF+         +N D    +++
Sbjct: 219 VGLGL--DVACFLNIGCDHISPVEHPSFEDYFESKLRIFDQ---ACVAVVNLDSDKADVI 273

Query: 236 KAKSHALGIKTIYSFG-----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             ++   G     +F             +  AD           +  M V+    S  V 
Sbjct: 274 LERAARCG--RTVTFSATGQGAGGAPAGAGGADVWAEGISSREGRIQMMVRTPSWSEPVT 331

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G   A N L  + I        +  +   +        G+           T I +
Sbjct: 332 VSMPGLFNADNALAAIAICEACGIGRERVV---AGLARVRVPGRMELLPTADPKVTGIVD 388

Query: 345 SYNANPASMKAAISVLSQISPHGEGR-RIAVLG 376
            Y  N  S +      S ++    GR  IAVLG
Sbjct: 389 -YAHNKLSYQ---RFFSSMAQEFAGRAIIAVLG 417


>gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 481

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQAYLVHRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +L+ +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLREQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|145220114|ref|YP_001130823.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206278|gb|ABP37321.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 476

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 128/366 (34%), Gaps = 39/366 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K T I + G+ GKTTT  ++   L S        G     I     +   P       F 
Sbjct: 104 KNTSIVVAGTHGKTTTTSIVAWLLESGGLR---PGFLVGGIPENFGIGCRPSGRSDEGFF 160

Query: 167 LGMSHLGEIRFLT-----HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +      +  F        L RP IA+I  I   H   FS +EEI  +   +   +   G
Sbjct: 161 VSEGDEYDTAFFDKRSKFMLYRPDIAIINNIEFDHADIFSSLEEIKRSFRLLVNLIPSNG 220

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-S 280
            + +N DD     + +K+    +  + +FG +   D+  +  +     S  ++  +G   
Sbjct: 221 ALIVNGDDPVAMEVSSKA----LCRVETFGLTDGCDWTAQNIRVEENGSSFDLYYKGGFE 276

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G +   N L ++ + ++    +D   + L  F   + R +       +G  T
Sbjct: 277 RRFNAPLFGSYNILNTLASIAVATLSGMTLDMTAEGLREFLRPKRRME--TVGTYEGNIT 334

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I++ +  +P +++  +  + +  P    RRI    +          F  +LAE     +
Sbjct: 335 VIED-FAHHPTAIRVTLEAIKERWPE---RRIITCFEARSNTTTRNIFQKELAECFGPAD 390

Query: 401 ISHVWL--------SGF----HVLALKDALPRSIHVHYSETMD------GLFLFIQSSLV 442
           I  V L         G         LK  L       +    D       +  F++S   
Sbjct: 391 I--VVLGKVHRPERYGPEGSLDTARLKKELEEQGKTVFLGGSDPKNYPADIVGFLESCRK 448

Query: 443 DGDVVV 448
             DVV+
Sbjct: 449 KDDVVL 454


>gi|259501411|ref|ZP_05744313.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus iners DSM 13335]
 gi|302190868|ref|ZP_07267122.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners AB-1]
 gi|259167160|gb|EEW51655.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus iners DSM 13335]
          Length = 440

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I I+GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 105 QHTSIGISGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 156 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 209 GDDTRLNNIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDIELGQFEI 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 263 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 318 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 373

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 374 PIFGSARENHGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 425

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 426 TKYEVAYEALLEQ 438


>gi|34540390|ref|NP_904869.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas gingivalis
           W83]
 gi|37538308|sp|Q51831|MURC_PORGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34396703|gb|AAQ65768.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas gingivalis W83]
          Length = 456

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 146/407 (35%), Gaps = 48/407 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   +    S    V    +VLG +  +  A         + + G+ GKTTT  +L
Sbjct: 75  AVPADHSELTYFRSNGYRVVKRAEVLGEITLMERA---------LCVAGTHGKTTTSTLL 125

Query: 127 TIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L        A +G  +N+    L L+      D  + E       E     H ++P 
Sbjct: 126 AHLLKQSHVDCNAFLGGISNNYQSNLLLS---DKSDLVVVEA-----DEFDRSFHHLKPF 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT+  P H+  +   E    +       ++  G + L Y       L +        
Sbjct: 178 MAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGAPVNPRLGSDV------ 231

Query: 246 TIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIV 303
           +++++    + AD+          + +      G  +E V  G+      +N +  + I 
Sbjct: 232 SLFTYSSDDQQADYFASDIMIRDGRLFFTWHYPGGQLEGVELGVPVRINVENAVAAMAIA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +    V+     ++ F   +G  +R+   L+     LID+ Y  +P  + AAI  + +I
Sbjct: 292 HLNGVTVEELRSGIASF---KGSHRRFEKVLDTERVVLIDD-YAHHPVELDAAIHSVREI 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
                G+ I  +     +   +  F+ D A          +L +Y    + L G     +
Sbjct: 348 ---YSGKHIMGIFQ-PHLYSRTADFYQDFARSLSMLDEVVLLDIYPARELPLPGVTSRLI 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            D +        S+    L  ++  + +  DVV++  +      RL+
Sbjct: 404 LDLIENPNKTLVSKN--DLLDYLHGNEIP-DVVLILGAGDI--DRLV 445


>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
 gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
          Length = 454

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 147/415 (35%), Gaps = 64/415 (15%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D V  + S  IP+ G              A   SK  I AITG+ GKT+T  ++   + +
Sbjct: 84  DYVKELKSAEIPIIG----------EVELAYNFSKGKIAAITGTNGKTSTTTLVGEIMKT 133

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             K+   +G+        +   +   +    + E+    L  I       RP ++ I  I
Sbjct: 134 YYKSVFVVGNIGVPYTQMV---KNTENDSVTVAEMSSFQLETIETF----RPDVSAILNI 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL+    +E    AK  I +   K  T  LNY+DS+   +  +  A    TI  F  
Sbjct: 187 TPDHLNRHHTMEAYIEAKVNITKNQTKEDTCILNYEDSYLRTVSGRIPA----TILWFS- 241

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSIL 306
                  +R+ ++        +  +    E V         IG H  +N++  +GI   L
Sbjct: 242 ------SVRELERGLFLRENHIIYRDDEKECVVCDVNELQIIGKHNYENVMAAVGIAIAL 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D   +A++ F   E    R      +      ++S   NP +   AI  +      
Sbjct: 296 KVPMDFIREAVTKFRGVE---HRIEYVTTKRGVKYYNDSKGTNPDASIQAIKAMQT---- 348

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHV 424
               +  ++G     G    S + D  +      ++++ L G     + +A  R    ++
Sbjct: 349 ----KTLLIGG----GYDKDSDYDDWIKAFDD-KVTYLVLLGQTREKIANAAKRLGVKNI 399

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
              +++     F       G+ V++    +S             F   ++ L +E
Sbjct: 400 VLVDSLSEAVDFCAEHAGVGETVLLSPCCASWGMFKDYEERGMLFKEYVHALKDE 454


>gi|226951755|ref|ZP_03822219.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
 gi|226837545|gb|EEH69928.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
          Length = 452

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 144/436 (33%), Gaps = 66/436 (15%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-----------AGLVVVNTDMVASIG 79
             DSR   P             GHD I   ++K            A  ++++  +   + 
Sbjct: 34  VTDSRETPP-------------GHDQIPENIKKSFGKLDLDLLLQAEEIILSPGLAPQLP 80

Query: 80  SLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
            +       IPV     +L          R  +   I+AITGS  K+T   +  +     
Sbjct: 81  EIQQALEKGIPVISDIQLL----------RRATDVPIVAITGSNAKSTVTTLFGLMAKDA 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            K  A  G+          L  +    +  + EL    L      T  +   +AV+  ++
Sbjct: 131 GKKVAVGGNLGRP-----ALDLLKDQPELIVLELSSFQL----ETTSHLNAEVAVLLNMS 181

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +     AK  IF+G++K   +  N DDS    L        +  + SFG +
Sbjct: 182 EDHLDRHGDMLGYHKAKHRIFQGVKK---VVYNRDDSLSRPL-----VPDVTPMQSFGLN 233

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                Q    ++     W+    +        +  G H   N L  L +   +     + 
Sbjct: 234 APDMNQYGVLREADGSMWLARGRERLIKTSDLYIQGMHNVANALACLALGEAIGLPTQSM 293

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L  F   E R +  +           ++S   N  +  AAI  L        G+   
Sbjct: 294 LETLQQFKGLEHRCEYVQTV---DQVRYYNDSKGTNVGATLAAIEGLGAAIEAKHGKLAL 350

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +LG   + G+  +     + + +       V L G     ++ AL  +  + ++ ++   
Sbjct: 351 ILGGQGK-GQDFKPLRNAIQKYVKT-----VILIGEDAAMIEQALHNTTQIQHASSLKQA 404

Query: 434 FLFIQSSLVDGDVVVV 449
                 +    DVV++
Sbjct: 405 VDIAHQATQAEDVVLL 420


>gi|194466657|ref|ZP_03072644.1| UDP-N-acetylmuramate/alanine ligase [Lactobacillus reuteri 100-23]
 gi|194453693|gb|EDX42590.1| UDP-N-acetylmuramate/alanine ligase [Lactobacillus reuteri 100-23]
          Length = 434

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 139/387 (35%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L+            T I I G+ GKT+T  +L+  L++++ T   IG          
Sbjct: 87  LKILSYPEAVENEVKNHTSIGIAGAHGKTSTTALLSHVLAAVEPTSYLIGDG-------- 138

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            + +   D  F +FE        + +      P  A++T +   H   F+ + ++  +  
Sbjct: 139 -VGKGNADARFFVFEADEYRDHFLAY-----HPDYAIMTNVDFDHPDYFNDLADVRDSFE 192

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + +++   IF   DD     L           +Y +G + + DF+    ++  E S 
Sbjct: 193 TYGKQVQR--AIFAWGDDPSLRDLNVDV------PVYYYGTNPDDDFRAENIQRTPEGST 244

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +   + + +     H  G H   N L  L +  +   ++D   + L+ F   +    R 
Sbjct: 245 YDAYFRDQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVK----RR 300

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +    T+ID+ Y  +P+ +KA I    Q  P  E   IAV            ++  
Sbjct: 301 FSETDIADTTIIDD-YAHHPSEIKATIDAARQKYPDRE--VIAVF--QPHTYSRLAAYID 355

Query: 391 DLAEVLSLYN---ISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           D AE LS  +   ++ ++      +G    A  +           +TMD L  +      
Sbjct: 356 DFAESLSRADKTFVTPIFGSIRENAGNISSADLEQRIEGSEGIDMDTMDKLLQY------ 409

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
              VVV   +        +    E++ 
Sbjct: 410 HNAVVVFMGAGD------VEKYEEKYK 430


>gi|90418193|ref|ZP_01226105.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337865|gb|EAS51516.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 475

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 156/417 (37%), Gaps = 57/417 (13%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  S   L+      +P+    ++L  L +   A         IAI G+ G
Sbjct: 67  AEVVVVSTAIKRSNPELAAARERLLPIVRRAEMLAELMRFRHA---------IAIGGTHG 117

Query: 119 KTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTTT  M+   L +  +  T    G  N +     T ARM    ++ + E   S    ++
Sbjct: 118 KTTTTSMVATLLDAGELDPTVVNGGIINAY----GTNARMGEG-EWMVVEADESDGTFLK 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   IAV+T I P HL ++   +++  A     E +   G   +  D    + L 
Sbjct: 173 -----LPADIAVVTNIDPEHLDHYGTFDKVREAFCAFVENVPFYGFGVMCLDHPEVQALV 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-------VHHGIG 289
           ++      + I ++G++  AD +       + +S  ++ ++ +           V    G
Sbjct: 228 SRIE---DRRIITYGENLQADVRFENVSFTAGKSHFDISIRDRVKGTTERIDGLVLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    + +   L    D   K L+ F   +   +R+      G   + D+ Y  +
Sbjct: 285 RHNVSNATAAIAVAHRLNISADAIRKGLAGFGGVK---RRFTLTGVVGEVAIYDD-YGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  ++AA+   S       GR IAV+          Q+   D A   +  +   I+ V+ 
Sbjct: 341 PVEIRAAL---SAARSSASGRVIAVV--QPHRYSRLQALFADFAACFNDADTVIIAPVYA 395

Query: 407 SGFH------VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +G           L + L    H      +  + L   I +    GD+VV   + S 
Sbjct: 396 AGEEPIDFVSSEILVERLKLGGHRDARLIDGPEELAPLIHNLAEPGDMVVCLGAGSI 452


>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
 gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
          Length = 450

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 128/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +  T 
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTATD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  +  +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|295693402|ref|YP_003602012.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus crispatus
           ST1]
 gi|295031508|emb|CBL50987.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           ST1]
          Length = 437

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 130/366 (35%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   +  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVANSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F    +  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ  + K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATQIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       ++   K L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVVAVAYTEKVPMEDIKKGLPSFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|258539939|ref|YP_003174438.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus Lc
           705]
 gi|257151615|emb|CAR90587.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus Lc
           705]
          Length = 436

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 104/293 (35%), Gaps = 32/293 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKT+T  +L   LS + KT   IG             +   D  F +FE  
Sbjct: 104 TSIGVAGAHGKTSTTGLLAHTLSGVAKTSYLIGDG---------TGKGVRDSKFFVFEA- 153

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   + G E++  A       ++K   I    D
Sbjct: 154 ----DEYRRHFLAYHPDYMIMTNIDFDHPDYYHGFEDVYDAFETEANQVQK--AIVAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D +   LKAK        +Y +G S   DFQ R  K+ ++ S  +     + +       
Sbjct: 208 DPWLRKLKAKV------PVYYYGTSDRDDFQTRNVKRDTKGSSFDAYFHDELIGHFFVPL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D     + L  F   + R              +I + Y 
Sbjct: 262 FGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM-----IIVDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +P  +KA +    Q  P      IAV          +Q++     +VLS  +
Sbjct: 317 HHPNEIKATLDAARQKYPDKA--IIAVF--QPHTYSRTQAYEPQYVQVLSQAD 365


>gi|88608103|ref|YP_506362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
 gi|88600272|gb|ABD45740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
          Length = 325

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 121/312 (38%), Gaps = 18/312 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFV----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           L T   +   ++   I    Q  +    +  S++   +   E F      ++D   FI  
Sbjct: 2   LLTADLIRSILKAELICEY-QAKIDISRSKFSMNCEKVGKGEIFVIADAKNHDIPCFIET 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   GA  ++   D+      + IP+  VDD L A+ KLA       + T+I ITGS  K
Sbjct: 61  AYLNGASAIITKKDIACP--KIPIPIIRVDDPLRAMEKLAAILIRNYQPTVIGITGSS-K 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TK ++   L +  KT        N  G  L +        F + E+  +  G +    
Sbjct: 118 TLTKNLIVTLLKNYGKTCYNEDGTGNFAGFTLGILNADFPCKFLVLEVDTTCSGNVDLFN 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +  P + VIT I   H      + E I   KA+IF+         LN+D  + ELL  +
Sbjct: 178 QITLPKVGVITDIRF-HQDRSIDLRELIVMEKAKIFQN---GCIAVLNFDTPYTELLLQE 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      TI SFG+++N D QL         +   V++              H+   +  
Sbjct: 234 ARK-NKATIISFGRNENCDVQL----LSHSNNTAVVKIGRSQKTCKLLDHNQHLKYVVPP 288

Query: 299 TLGIVSILTADV 310
            +G++  L   V
Sbjct: 289 MIGVMKALKLKV 300


>gi|251782916|ref|YP_002997219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391546|dbj|BAH82005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 456

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 120/351 (34%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S++ I+ ITGS GKTTT  M+   L++  ++    G+        +  A      D
Sbjct: 110 AYLVSESPIVGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASEVVQKASAN---D 166

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L          +PHIAVIT + P HL      E+  +AK  I   +    
Sbjct: 167 TLVMELSSFQLMG----VDAFKPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTADD 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN +      L   + A    T+  F   +     +       +     +  +G  +
Sbjct: 223 YLILNANQEISAALAKTTKA----TVIPFSTQE-----VVDGAYLEDGM---LYFKGHPI 270

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +     D  ++ LS F   +    R +        
Sbjct: 271 MPAANLGVPGSHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVK---HRLQLVGKIKDI 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 328 TFYNDSKSTNILATQKALSGFD------NKKLILIAGG-LDRGNEFDDLVPDL------R 374

Query: 400 NISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +K A    ++    +  +             GD +++
Sbjct: 375 GLKQMIILGESAERMKRAAEMANVPYLEAADVAAATELAFQEAQAGDTILL 425


>gi|237785344|ref|YP_002906049.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758256|gb|ACR17506.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 537

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 151/445 (33%), Gaps = 64/445 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + S     IPV    DVLGAL     A           I G+ GKT+T  +
Sbjct: 110 AAIPQDNPELVSARERGIPVVTRSDVLGALLLDHDAL---------LIAGTHGKTSTTSL 160

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             IAL             +  +G  L+          G   +  +   +   LT+   P+
Sbjct: 161 AVIALQQAG------MDPSFAVGGQLSTTGTNAHHGTGSVFVAEADESDASLLTY--SPN 212

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I   HL  +   +       E  + +   G + +  DD     L  +    G +
Sbjct: 213 VAVVTNIEADHLDFYGSEQSYVHVFDEFADRIVDGGYLVVCVDDPHAAALAERIVQQGNR 272

Query: 246 -TIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQL------------------QG 278
             +  +G S             ++ +     +++   +++                  + 
Sbjct: 273 INVIGYGTSDACTRHPSIPVGAEITEITPKPDRTDALIRISLPAHASANNSAGEANEAET 332

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQG 337
            +  V  H  G HM  N +  +    ++ AD + A+  ++ F     R + +   +    
Sbjct: 333 STHRVEMHIPGKHMVLNAVAAIVSSVLVGADRERAVSGVNGFQGVRRRFESHGTISHVYY 392

Query: 338 FFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               + + Y  +P  ++A ++   +         G  RR+ V+     M   ++ F  + 
Sbjct: 393 EGASVYDDYAHHPTEVRAVLTAAREKIQAMDPVEGHQRRVIVVFQ-PHMYSRTEEFASEF 451

Query: 393 AEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           AE LSL         Y      + G     + D +  S H  +   +D +   + S    
Sbjct: 452 AEALSLADEAIVMDIYGAREKPIPGVTSDLIIDQMTISAHAAHR--VDEVPRMVSSIAGP 509

Query: 444 GDVVVVKSSNSCGF--YRLINLLLE 466
           GD+++   + +       ++  L E
Sbjct: 510 GDIILTMGAGTVTMLADPIVAALHE 534


>gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae R6]
 gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase
           [Streptococcus pneumoniae R6]
 gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV104]
 gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 481

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 164/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|270290450|ref|ZP_06196675.1| UDP-N-acetylmuramate-alanine ligase [Pediococcus acidilactici 7_4]
 gi|270281231|gb|EFA27064.1| UDP-N-acetylmuramate-alanine ligase [Pediococcus acidilactici 7_4]
          Length = 438

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 137/393 (34%), Gaps = 54/393 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V      L +L  A       T I + G+ GKT+T  +L   L  + KT   IG    
Sbjct: 88  LKVVRYHEFLGQLLAAY------TSIGVAGTHGKTSTTGLLAHVLGGVDKTSYLIGDG-- 139

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    +   D  F +FE        I +      P   ++T +   H   +  + +
Sbjct: 140 -------TGKGVPDARFFVFEADEYRRHFIAY-----HPDYMIMTNVDFDHPDYYKDLAD 187

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           + SA  +    ++K   +F   +D+    L A         +Y +G + N DFQ +   +
Sbjct: 188 VESAFQQAASQVKKG--LFAWGEDTSLRKLHADV------PVYYYGTADNDDFQAKNIVR 239

Query: 266 CSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+ +G+ +     +  G H   N L  + +      D+    K L  +   +
Sbjct: 240 TTTGSEFDVEHRGEPIGHFKINLFGEHNVLNTLAVIAVAYFEKIDLALVQKELLSYQGVK 299

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R       G   LID+ Y  +P+ +KA +    Q     + + +AV          
Sbjct: 300 ----RRFSKSTVGDNILIDD-YAHHPSEIKATLDAARQ--EFPDKKIVAVF--QPHTYTR 350

Query: 385 SQSFHIDLAEVLSLYN---ISHVWLSGFHV------LALKDALPRSIHVHYSETMDGLFL 435
           + +     A+ LSL +   ++ ++ S            L + +     + + + +  L  
Sbjct: 351 TAALLDGFAKSLSLADQVVLTEIFGSVREANGKVSSQDLANLIGHDTKIIHEDDLSALAD 410

Query: 436 FIQSSLVDGDVVVVKSSNSC-GFYRLINLLLEE 467
                     V+V   +     +      L++E
Sbjct: 411 ------QHNAVLVFMGAGDILKYEDAYKALVKE 437


>gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 481

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 149/455 (32%), Gaps = 67/455 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+ KG  L V   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAIAKGLPLYVSEVDY-----KLDIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+  A++   +A     + +  ++  TG+ GKTT        L    K  A + + N  +
Sbjct: 91  DIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYK-PALLSTMNTTL 149

Query: 148 GVP------------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          L L  M  +         I E+        R   + +   + V  
Sbjct: 150 DGQTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGR--VYGLTFDVGVFL 207

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            I+P H+        E+    K  + E    +  + +N     F  L  +          
Sbjct: 208 NISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFPFLANQVAN------- 257

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                ++A +      Q +       +  G+ +       IG+   +N +        L 
Sbjct: 258 ----QEHAFYGALSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H 
Sbjct: 314 ASLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQ 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422
            G  + +LG     GE  ++   D   V++ +    V L+           +   +   I
Sbjct: 366 TGNLVLILGAPGNKGESRRA---DFGAVINQHPNLTVILTADDPNFEDPEYISQEIASHI 422

Query: 423 --HVHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
              +      +       S      D V++  K +
Sbjct: 423 TRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKGA 457


>gi|332652745|ref|ZP_08418490.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
 gi|332517891|gb|EGJ47494.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
          Length = 464

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 146/422 (34%), Gaps = 53/422 (12%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  V+    +      ++      IPVF      GA+ +    A        + + G+
Sbjct: 78  QGADCVIRTAAVHDDNPEIAAARAAGIPVFERAQAWGAIMRHYQNA--------LCVAGT 129

Query: 117 VGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M T   L++ +     IG           L  +      G  +  +    E 
Sbjct: 130 HGKTTTTSMCTHIFLAAQRDPTVMIGGV---------LPALGAGHRVGKGDTIILESCEY 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                   P +AVI  +   HL  F  +E++  +     + + + G +  + DD+     
Sbjct: 181 CNSFLSFFPTVAVILNVDADHLDFFKDLEDVKHSFRRFAQLVPQGGCVVADGDDANTM-- 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQ 294
              +     K + +FG  +  D               ++  +GK++  +     G H  +
Sbjct: 239 --DALKDLDKPMLTFGL-EQGDIHAANLTWNKGLPTFDLIYKGKTLGSISLRVPGIHNVR 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L   G    L   V+   + L  F    G G+R+          + D+ Y  +P  ++
Sbjct: 296 NALAAAGAALQLNVPVEAIREGLYAFG---GAGRRFEHKGEYHGAVVYDD-YAHHPHELQ 351

Query: 355 AAISVLS---------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +S +             PH   R   +  D  E+ +L     + LAE+ +      + 
Sbjct: 352 ALLSTVKTLGYQRVICAFQPHTYTRTKELFDDFVEVLKLPDK--VLLAEIFAARETDTL- 408

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             G     L D +P   +  +  T++ +    +     GD+++   +           LL
Sbjct: 409 --GISSKDLADRIP---NAEFCPTLEDVTARFKELAQPGDLLITVGAGDIYLA--GEALL 461

Query: 466 EE 467
           ++
Sbjct: 462 KQ 463


>gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 481

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|325479474|gb|EGC82570.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 464

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 138/398 (34%), Gaps = 42/398 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + + + +  S+  PV      LGAL        +R+    IA++GS GK+TT  M+
Sbjct: 79  AILDDNEELIAAKSVGCPVVTRGVFLGAL--------MRNYKNSIAVSGSHGKSTTTSMI 130

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L             +  I +   L  M  +V  G  +  ++   E +       P  
Sbjct: 131 SKILMHSD--------VDATILLGGELDEMKGNVRVGSEDYLVTEACEYKGNIRYYYPQT 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I   HL  +  + +I +   E     +       N ++   +L+           
Sbjct: 183 LIVLNIDEDHLDYYKDLNDIVNTFKEYLSNQDANSLTITNLNEENNKLIFDSVKG----R 238

Query: 247 IYSFG-KSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           + ++  ++++AD+     K         +++    S+E      IG H   N + ++   
Sbjct: 239 LITYAQENEDADYNAINIKFDEVGRPNFDLRFPDGSIEHFELGVIGRHNINNAMASIIST 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
                 V+T     +      G  +R +        T++ + Y  +P+ ++  +  L++ 
Sbjct: 299 YENGIPVETI---RTNLVKYTGLDRRMQIIGFVDDATIMTD-YGHHPSEIQVTLDALAEH 354

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R   +  D     + +         V  +Y     +    H   +
Sbjct: 355 TKGKLICVWQPHTYSRTKTLFNDFLNCFDSADE-----VIVTDIYAAREKFDPTIHSKDV 409

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            DAL  + I+  Y    +    +I   +   D+V+   
Sbjct: 410 VDALTKKGINAKYIGEFEDARDYIYKDIEKNDLVLTTG 447


>gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae A909]
 gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
 gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae A909]
 gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
          Length = 484

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 139/405 (34%), Gaps = 57/405 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D         I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITAGLSFYVSEIDY-----GADI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               L L RM        +   + E+       +    + +  
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAY--LTKRVYGLTF 202

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I+P H+        E+    K  + E    +  + +N     F ++K +   +
Sbjct: 203 DVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYI 259

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLG 301
                  + ++             +E       ++GK         IG    +N +    
Sbjct: 260 PHDFYGDYSEN-----------VITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ 
Sbjct: 309 ACLRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 364 E---HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 516

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 151/477 (31%), Gaps = 65/477 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +S DSR +     FF  KG  +    ++  A + GA   V         G  ++
Sbjct: 28  QTRMEAVSYDSRDVQNNSLFFC-KGAGF-RPTYLTMAKENGAIAYVAEQPYPEGTGMHAL 85

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----------TIALSS 132
            V  V   + AL   A     +    ++  TG+ GKTT+   L           T  LSS
Sbjct: 86  IVRNVSKAM-ALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSS 144

Query: 133 IKKTY--ACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +      A   ++ + +  P +L      R  VD       + +S     +     +   
Sbjct: 145 VDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYD 204

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
           +     I P H+        E+    K ++   L  +    +N + D F ++  A +   
Sbjct: 205 LGFFLNITPDHIGVNEHPNFEDYLHCKLQL---LVNSRKCIINAETDRFADVYAAATTTT 261

Query: 243 GIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHG 287
              +IY F +         K  DF+ +  +    ++   +            S E     
Sbjct: 262 NPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQM 321

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N    +    +     +   K           G+       +    ++D  Y 
Sbjct: 322 IGDFNETNATGAIIGAGLAGMSYEDCAKG---IRHVTIPGRMETVTTQKHGLIVVD--YA 376

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
            N ASM A +  +         R I V+G     G+   S     +E L        +L 
Sbjct: 377 HNKASMLALMRFMR--REFTNPRVIVVVGAP---GDKGISRRPGFSESL-TAEADKAYLT 430

Query: 407 ---SGFH-VLALKDALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVV--KSS 452
               GF     + + +   I     ET+     +       S     DVV++  K +
Sbjct: 431 TDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGA 487


>gi|282902044|ref|ZP_06309942.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193131|gb|EFA68130.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 489

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 135/384 (35%), Gaps = 46/384 (11%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SS 132
             +   L  P+    DVL AL               IA+ G+ GKTTT  M+   L  + 
Sbjct: 112 YRAALELGCPILHRSDVLAALIA---------DYHSIAVAGTHGKTTTSSMIGYMLLEAG 162

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T    G  N   G          +  + + E   S    ++       P I +IT I
Sbjct: 163 LDPTIVVGGEVNAWEGNAR-----LGESKYLVAEADESDGSLVKHT-----PAIGIITNI 212

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H  +++ +E++         G +    +  + D             L     YS   
Sbjct: 213 ELDHPDHYATLEQVVETFQTFARGCQ---VVVGSIDCDIVR------DRLKPGISYSLDP 263

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVD 311
            + AD+ +       + +   V  +GKS+ V+    +G H   N L  + +   L  +  
Sbjct: 264 DQGADYTVTNIDYRPDGTTALVWEKGKSLGVLNLQLLGLHNLSNALAAVAVGRSLNLEFG 323

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              K L+ F   EG  +R+         T ID+ Y  +P+ ++A ++     +    G+R
Sbjct: 324 QIAKGLTTF---EGARRRFEFKGEVDGITFIDD-YAHHPSEIRATLAAARLQAK--PGQR 377

Query: 372 IAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSI 422
           +  +            + E +  F H DL  +  +Y+             L  +   R  
Sbjct: 378 VVGIFQPHRYSRVRTFLDEFANCFTHADLVVLTDIYSAGEPSCEQVTGEKLAAEIAKRHP 437

Query: 423 HVHYSETMDGLFLFIQSSLVDGDV 446
            V Y  ++  +   + S+L  GD+
Sbjct: 438 QVIYQPSLALIPPVLLSTLRPGDL 461


>gi|304384668|ref|ZP_07367014.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus acidilactici
           DSM 20284]
 gi|304328862|gb|EFL96082.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus acidilactici
           DSM 20284]
          Length = 443

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 137/393 (34%), Gaps = 54/393 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V      L +L  A       T I + G+ GKT+T  +L   L  + KT   IG    
Sbjct: 93  LKVVRYHEFLGQLLAAY------TSIGVAGTHGKTSTTGLLAHVLGGVDKTSYLIGDG-- 144

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    +   D  F +FE        I +      P   ++T +   H   +  + +
Sbjct: 145 -------TGKGVPDARFFVFEADEYRRHFIAY-----HPDYMIMTNVDFDHPDYYKDLAD 192

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           + SA  +    ++K   +F   +D+    L A         +Y +G + N DFQ +   +
Sbjct: 193 VESAFQQAASQVKKG--LFAWGEDTSLRKLHADV------PVYYYGTADNDDFQAKNIVR 244

Query: 266 CSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+ +G+ +     +  G H   N L  + +      D+    K L  +   +
Sbjct: 245 TTTGSEFDVEHRGEPIGHFKINLFGEHNVLNTLAVIAVAYFEKIDLALVQKELLSYQGVK 304

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R       G   LID+ Y  +P+ +KA +    Q     + + +AV          
Sbjct: 305 ----RRFSKSTVGDNILIDD-YAHHPSEIKATLDAARQ--EFPDKKIVAVF--QPHTYTR 355

Query: 385 SQSFHIDLAEVLSLYN---ISHVWLSGFHV------LALKDALPRSIHVHYSETMDGLFL 435
           + +     A+ LSL +   ++ ++ S            L + +     + + + +  L  
Sbjct: 356 TAALLDGFAKSLSLADQVVLTEIFGSVREANGKVSSQDLANLIGHDTKIIHEDDLSALAD 415

Query: 436 FIQSSLVDGDVVVVKSSNSC-GFYRLINLLLEE 467
                     V+V   +     +      L++E
Sbjct: 416 ------QHNAVLVFMGAGDILKYEDAYKALVKE 442


>gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae G54]
 gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae
           G54]
          Length = 481

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVV--KSS 452
           L+         +A+ D +   I+  V              +      D V++  K +
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGA 457


>gi|326797499|ref|YP_004315318.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326548263|gb|ADZ76648.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 454

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 132/367 (35%), Gaps = 45/367 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IA+ G+ GKTTT  M+   L+S  +      ++   I        +  D D  + E   
Sbjct: 118 TIAVAGTHGKTTTSSMIAHILTSSGRPC---SAFLGGIAANYNTNLLLADSDLFVVEA-- 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       + P+IAV+T   P HL  +   E +  +       + K G   +    
Sbjct: 173 ---DEFDRSFLTLHPNIAVVTATDPDHLDIYGDSEHMLESFRLFVNQVAKDGKRII---- 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGI 288
                       L + T   +   K AD      +  ++  + + +       ++     
Sbjct: 226 ---------KEGLHLPTDIRYAVEKRADVYATNIQIRNKCFYFDYLGYNKSIFDIKLGIA 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N +  + +  +L  D +    +L+ F   +   +R+   +N+     +D+ Y  
Sbjct: 277 GKHNIENAVAAITVAKLLGVDDEAISGSLASFKGVK---RRFEYIVNREDQVYVDD-YAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---------SLY 399
           +P  ++A +S + ++  +G+     V      +   ++ F  + AEVL          +Y
Sbjct: 333 HPEELRACLSAMKEL--YGDKEITCVF--QPHLFTRTRDFVDEFAEVLGLADVLLLMDIY 388

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                 + G +   L   +  +    Y ++   +  +I+       V++   +       
Sbjct: 389 PAREQPIEGVNSDWLLSKVQLTHK--YKQSASDVLAYIKRERPP--VLLTVGAGDIDL-- 442

Query: 460 LINLLLE 466
           L+N + E
Sbjct: 443 LVNPIKE 449


>gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
 gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
          Length = 572

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 171/463 (36%), Gaps = 61/463 (13%)

Query: 6   TFHDL---LQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +L   L+A+  H +      +  V GIS+DSR++ P + + A+ G    G  F   A
Sbjct: 33  TVTELVEHLEALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKA 92

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVL----GALNKLAVAARLRSKATIIA 112
           ++  A  ++ +T  V  I   ++ +      V D L    G+L  L   ++        A
Sbjct: 93  LEAQAHAILTDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYA 152

Query: 113 ITGSVGKTTTKEMLTIALSSIKK-TYACIGSYN---NHIGVPLTLARMPVDVDFGIF--- 165
           +TG+ GKTTT  ML     +  K     IG+     + + VP  L          +    
Sbjct: 153 VTGTNGKTTTTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIM 212

Query: 166 -ELGMSHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            E G+SH   +   +H +  H        ++  T +   HL     ++    +KA++F  
Sbjct: 213 GECGVSHAA-MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP 271

Query: 217 LEKTGTIFLNYDDSFFELLKAKSH-----ALGIKTIYSFGKS--------KNADFQLRKW 263
            E+T    +  DD + E +   +         ++ +  +G             D+ +   
Sbjct: 272 -ERTERAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINV 330

Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-- 320
           ++        +    G ++    H        N  +   +V I  ++ +  I   ++   
Sbjct: 331 ERDGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADG 390

Query: 321 ----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   GR +    A +    T++D  +  NP  +  A+     +   G GR I V G
Sbjct: 391 TALTPIVPGRMQLISLAPH----TIVD--FAHNPDGLTRALEA---MDRPGGGRVIIVFG 441

Query: 377 DMCEMGELSQSFHIDL-AEVLSLYNISHVWLSGFHVLALKDAL 418
              E   L +    ++ A+   +  ++     G     +++A+
Sbjct: 442 ATGERDHLKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAV 484


>gi|312872185|ref|ZP_07732258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2062A-h1]
 gi|325913363|ref|ZP_08175730.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           60-B]
 gi|311092269|gb|EFQ50640.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2062A-h1]
 gi|325477289|gb|EGC80434.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           60-B]
          Length = 440

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I I+GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 105 QHTSIGISGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 156 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 209 GDDTRLNNIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDIDLGQFEI 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 263 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 318 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 373

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 374 PIFGSARENHGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 425

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 426 TKYEVAYEALLEQ 438


>gi|302335880|ref|YP_003801087.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
 gi|301319720|gb|ADK68207.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
          Length = 473

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 128/405 (31%), Gaps = 45/405 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      V     L IPV+    +L  L          S AT IA+ G+ GKTTT  M
Sbjct: 78  SAIPETNPEVIRARELGIPVWPRAKMLSYL---------SSDATTIAVAGTHGKTTTSSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   +  +             I              + + E   S    +      + P 
Sbjct: 129 VATMIDHLGMD---PSFLIGGIVEEYGTNGRNGRGGYFVCEADESDGSFL-----YLNPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T I   HL ++  ++ I     +  + +   GTI +N D   +  L   +     +
Sbjct: 181 VVVVTNIEEDHLDHYGTLKNIERTFCQFMDLVGDAGTIVINGDVPHYVELARST----GR 236

Query: 246 TIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG-IGYHMAQNMLMTLGI 302
            + S+G     D+  + +       S   V+   G S+ VV     G H   N    + +
Sbjct: 237 RVVSYGFDGACDYVCIPEDSHHRLASSFSVETPSGDSVRVVIKSNPGRHNMANATAAIAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D+  A  ALS F        R    +       + + Y  +P  ++A ++    
Sbjct: 297 ADALGCDLPRAADALSAFQGA----HRRFTHVGDVDGVTVVDDYGHHPTEIRATLAAARD 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---------SHVWLSGFHVLA 413
           +      R + V          +QS     A      ++             + G     
Sbjct: 353 LD---FKRIVCVF--QPHRYSRTQSLQDQFAHAFDNADVLVVTEIFPAGETPIPGVTGKT 407

Query: 414 LKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +   + ++     V +      L   +      GD+++ + +   
Sbjct: 408 VSGGVAQAGGVDDVSFIANRKDLVRHLCDVCRPGDLLITQGAGDV 452


>gi|256843669|ref|ZP_05549157.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|293380420|ref|ZP_06626489.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
 gi|256615089|gb|EEU20290.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|290922999|gb|EFD99932.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
          Length = 437

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 130/366 (35%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVADSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F    +  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ  + ++ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQATQIQKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + +  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIREGMLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|309803450|ref|ZP_07697544.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           11V1-d]
 gi|309805369|ref|ZP_07699418.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           09V1-c]
 gi|312870899|ref|ZP_07731004.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           3008A-a]
 gi|312873617|ref|ZP_07733664.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2052A-d]
 gi|329919679|ref|ZP_08276657.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           1401G]
 gi|308164459|gb|EFO66712.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           11V1-d]
 gi|308165296|gb|EFO67530.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           09V1-c]
 gi|311090870|gb|EFQ49267.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2052A-d]
 gi|311093589|gb|EFQ51928.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           3008A-a]
 gi|328937331|gb|EGG33755.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           1401G]
          Length = 440

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I ++GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 105 QHTSIGVSGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 156 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 209 GDDTRLNNIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDIELGQFEI 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 263 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 318 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 373

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 374 PIFGSARENHGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 425

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 426 TKYEVAYEALLEQ 438


>gi|221632098|ref|YP_002521319.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
 gi|221155634|gb|ACM04761.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
          Length = 462

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 141/397 (35%), Gaps = 38/397 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      VA+  +  IP+     +LG L               IA+ G+ GK+TT  M
Sbjct: 80  SAVRAQHPEVAAFAAQRIPIVKRAALLGWLAASYR---------TIAVAGTHGKSTTCGM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +AL +   T            +  T AR+P    F +         E  +    + P 
Sbjct: 131 IALALDAAGLTPGFAIGAEVR-DLGGTSARLPGGNLFVV------EADEYDYSFLFLEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+  +   H   F     +A A       L   GT  +  DD     +  +  + G +
Sbjct: 184 IAVVLNVDHDHPDLFPDRASVARAFRRFLARLRPVGTAVVWADDPVACAVADELQSRGHR 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG++  A +++       + S       G    +     G H   N    +  V  
Sbjct: 244 -VVTFGETAEAAYRVLPDGALRDPS-------GAIWPLALAVPGRHNRLNAAAAVAAVVQ 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   +  A++AL  F    G G+R+          +I + Y  +P  + A I+   +  P
Sbjct: 296 VGVPLVVAVRALEHF---NGVGRRFEEVGIVNGVRVILD-YAHHPREIAATIAAARERFP 351

Query: 366 HGEGRRIAVLGDMCE------MGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDAL 418
               R  AV            + E + +    DLA V  +Y      L+G    AL  A+
Sbjct: 352 A--ARLWAVFQPHTYSRTARFLTEFAHALEQADLAVVAEIYAAREQPLAGIDAAALASAI 409

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            R   +   + M      + +++  GDVV+V  +   
Sbjct: 410 RRIPAIAVPDPM-AAAETVGAAMRAGDVVLVLGAGDI 445


>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
 gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
          Length = 445

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 460

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 126/359 (35%), Gaps = 38/359 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI+G+ GKTT   ML+              + +  I V   L  +  +   G  +  ++
Sbjct: 114 VAISGAHGKTTCTSMLSNIT--------LKANLDPTILVGGELDIIGGNFRIGSSDYFIT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E +       P++ VI  I   HL  +  I+EI     +  + +   G +     DS
Sbjct: 166 EACEYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPNDGYLIGYIGDS 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEV-QLQGKSMEVVHHGI 288
             + +  K+         S+G  +NAD   R      +  +  +V +   K  ++     
Sbjct: 226 RVKEILYKAKC----NTLSYGF-ENADVTARNITFNEKGCASFDVYKHNNKLFDLTLSNP 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L ++ +  I   + D  I         +G  KR+         T+ID+ Y  
Sbjct: 281 GEHNILNALSSICVSLIFDVNYDDIICG---LSECKGAHKRFEYKGEVNGVTVIDD-YAH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  +KA ++   +I  +   +   V          +++   +  +    ++   V L  
Sbjct: 337 HPVEIKATLNTSKKIPHN---KTFCVF--QPHTYTRTKTLFDEFTDAF--FDADEVVLMD 389

Query: 409 FHVLALKD------------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +    KD               + +      + D    ++++S    D+++   +   
Sbjct: 390 IYAAREKDTGLVSSNDLGVALRAKGVKCTNVHSHDEALEYLKNSAKPNDLLLTVGAGDV 448


>gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 516

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 152/477 (31%), Gaps = 65/477 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +S DSR +     FF  KG  +    ++  A + GA   V         G  ++
Sbjct: 28  QTRMEAVSYDSRDVQNNSLFFC-KGAGF-RPTYLTMAKENGAIAYVAEQPYPEGTGMHAL 85

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----------TIALSS 132
            V  V   + AL   A     +    ++  TG+ GKTT+   L           T  LSS
Sbjct: 86  IVRNVSKAM-ALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSS 144

Query: 133 IKKTY--ACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +      A   ++ + +  P +L      R  VD       + +S     +     +   
Sbjct: 145 VDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYD 204

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
           +     I+P H+        E+    K ++   L  +    +N + D F ++  A +   
Sbjct: 205 LGFFLNISPDHIGVNEHPNFEDYLHCKLQL---LVNSRKCIINAETDRFADVYAAATTTT 261

Query: 243 GIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHG 287
              +IY F +         K  DF+ +  +    ++   +            S E     
Sbjct: 262 NPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQM 321

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N    +    +     +   K           G+       +    ++D  Y 
Sbjct: 322 IGDFNETNATGAIIGAGLAGMSYEDCAKG---IRHVTIPGRMETVTTQKHGLIVVD--YA 376

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
            N ASM A +  +         R I V+G     G+   S     +E L        +L 
Sbjct: 377 HNKASMLALMRFMR--REFTNPRVIVVVGAP---GDKGISRRPGFSESL-TAEADKAYLT 430

Query: 407 ---SGFH-VLALKDALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVV--KSS 452
               GF     + + +   I     ET+     +       S     DVV++  K +
Sbjct: 431 TDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGA 487


>gi|227892845|ref|ZP_04010650.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
 gi|227865347|gb|EEJ72768.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
          Length = 437

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 127/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGR---------GKGVPDSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ  + ++ +  S   V   GK + +   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQATQVEKSTTGSKFHVLAHGKDLGQFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D     L  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q       + + V          ++ +  D  E+L    +   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPNKKLVVVF--QPHTFSRTKKYQKDFEEIL--RGVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       D L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREKNGDISSDDLVKNIPSSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|289522905|ref|ZP_06439759.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503929|gb|EFD25093.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 485

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 140/414 (33%), Gaps = 44/414 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + D +       + V    D+L ++          ++   I + G+ GKTTT  M
Sbjct: 86  SAIAWDNDELVYARKAGVNVARRGDILSSIF---------NRLKGIGVAGAHGKTTTSSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +           +  I +   ++ +  +   G  +  +S L E      L   +
Sbjct: 137 IATVLDAAG--------LDPTIAIGGEVSDIGGNARLGHGDYMVSELDESDGSFELFSCY 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I   H++ +   + +  A        +  G I +  +D+  + +  K       
Sbjct: 189 IPVVTNIDWDHVNFYPTFQSVQDAFVRFLSKRKDDGKIIICGEDTGCQSVAGKFA----P 244

Query: 246 TIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
              ++G     D+                V  +G  + E+     G H   N L    + 
Sbjct: 245 QCITYGWGMQWDWGAVGVNHSVGGGVSFTVVKRGAEIGEINLRVSGEHNVLNALAACAVC 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +T   AL  F   + R +      +        + Y  +P  ++A +  L  I
Sbjct: 305 DLLGISFNTIRHALHKFKGTKRRLQCLGVCDD----IYFYDDYGHHPREVQATLDTLRNI 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
            P    R + +          +++ +   AE         +L +Y              +
Sbjct: 361 FPS--RRLVVIF--QPHRYSRTKAMYRKFAEALMKADLVYILPVYPADEKLELSISSDLI 416

Query: 415 KDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVVKSSNSCGFY--RLINLL 464
            D+L          ++  D +   +  +++ GD+++   + +   Y  +++NL+
Sbjct: 417 VDSLTSECGHKNCLSLSDDEVVSKVAENILPGDILLTLGAGNVNIYGNQILNLI 470


>gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 492

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 153/448 (34%), Gaps = 58/448 (12%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  V+            +       IPV     VL  L         
Sbjct: 61  GHDASSLDLLPGGATAVITTHAAIPKTNPELVEARRRGIPVILRPAVLAKLMD------- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDF 162
               T + +TG+ GKTTT  ML +AL       ++A  G                   D 
Sbjct: 114 --GRTTLMVTGTHGKTTTTSMLIVALQHCGRDPSFAVGGEMGE-----AGTNAHHGSGDC 166

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S    + +      P++AV+T I   HL  +              + L   G 
Sbjct: 167 FVAEADESDGSLLEYT-----PNVAVVTNIETDHLDFYGSAGAYVDVFDAFVDRLAPGGA 221

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQL- 276
           + +  DD     L  ++  LGI+ +  +G       +     L  W+Q   ++  ++QL 
Sbjct: 222 LVVCVDDPGAAALARRTAELGIR-VLRYGSGASLPGEPLAATLLSWQQQGTEAVAQIQLA 280

Query: 277 -----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                + +   +     G HMA N +  L     + A VD  +  L+ F     R +   
Sbjct: 281 PDLDPEQRPRVMRLSVPGRHMALNAMGALLAALEIGAPVDAVLDGLAGFEGVRRRFELVG 340

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            A N     + D+ Y  +P  + A ++ +   +   G+GR IAV      +   +++F  
Sbjct: 341 TAGNGQPVRVFDD-YAHHPTEIVATLAAVRTLLEQSGDGRSIAVF--QPHLYSRTKAFAE 397

Query: 391 DLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           +            VL +Y      L+G    ++ + +  S+ V Y          + +  
Sbjct: 398 EFGHALDAADEVFVLDVYGAREQPLAGVSGASVAEHV--SVPVRYLPNFSAAAEQVAAVA 455

Query: 442 VDGDVVVVKSSNSCGF--YRLINLLLEE 467
             GDV+V   +         ++  L   
Sbjct: 456 GPGDVIVTMGAGDVTLLGPEIVTALRAR 483


>gi|114327092|ref|YP_744249.1| UDP-N-acetylmuramate--L-alanine ligase [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327926|sp|Q0BV26|MURC_GRABC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114315266|gb|ABI61326.1| UDP-N-acetylmuramate--alanine ligase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 481

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 156/446 (34%), Gaps = 62/446 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   G   VVV       +   VA+  +  IPV    ++L  L +L  A    
Sbjct: 59  GHD----AANLGTAQVVVISSAVGRDNPEVAAARAKLIPVVRRAEMLAELMRLKWA---- 110

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                +A+ G+ GKTTT  ++   L  + +  T    G  N +     T  R+    ++ 
Sbjct: 111 -----VAVGGTHGKTTTTSLIAAVLEAAQLDPTVINGGIINAY----GTNTRLGAG-EWM 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    +R     +   IAV+T + P HL ++   E + +   +    +   G  
Sbjct: 161 VVEADESDGSFLR-----LPAVIAVVTNMDPEHLDHWGTAEAMEAGYQQFVSNIPFYGFA 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---- 279
            L  D    + +  +   L    I ++G S  AD +  +       +  EV +  +    
Sbjct: 216 VLCIDHPTVQKMIPQ---LSDHRIITYGFSPQADVRAERINTDKFGATFEVVITDRQTRR 272

Query: 280 ---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +    +G H   N L  + +   +         A + F   +   +R+      
Sbjct: 273 TRRTPPLRLPMLGEHNIANTLAAIAVAVEMGISDSVLQSAFASFKGVK---RRFTKTGET 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------- 389
           G  T+ID+ Y  +P  + A +    Q         IAV+        L+  F+       
Sbjct: 330 GGITIIDD-YGHHPVEIAAVLRAARQAGARD---VIAVV-QPHRYSRLASLFNEFCTCMN 384

Query: 390 -IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDV 446
                 V  +YN     + G    +L D L  S H         + L   I +    GD 
Sbjct: 385 DAGTVIVADVYNAGESPIEGVDRDSLVDGLRTSGHKSVVPLPGPEHLAEMIHAIARPGDF 444

Query: 447 VVVKSSNSCGFYRLINLLLEEFPAIQ 472
           VV   + +   +     L EE   +Q
Sbjct: 445 VVCLGAGNITAW--AQTLPEELATLQ 468


>gi|315653163|ref|ZP_07906088.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners ATCC
           55195]
 gi|325911563|ref|ZP_08173971.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           143-D]
 gi|315489528|gb|EFU79165.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners ATCC
           55195]
 gi|325476549|gb|EGC79707.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           143-D]
          Length = 440

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I I+GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 105 QHTSIGISGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 156 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 209 GDDTRLNDIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDIELGQFEI 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 263 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 318 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 373

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 374 PIFGSARENHGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 425

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 426 TKYEVAYEALLEQ 438


>gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 481

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 95/492 (19%), Positives = 171/492 (34%), Gaps = 66/492 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL---------------TLARMPVDVDFGIFELGM 169
                LS      A + + N  +                    +    V  D     + +
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E    +  + +N 
Sbjct: 187 SSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVIINS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGK-SMEVVH 285
           D   F +LK +             + ++ DF   ++    E S        GK + +   
Sbjct: 244 DMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGKLAGDYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N +        L A ++   K ++        G+        G    ID  
Sbjct: 292 QLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFID-- 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  S+K  I+V   +  H  G+   VLG     G   +S   D   +L+ +    V+
Sbjct: 347 YAHNGDSLKKLINV---VETHQTGKIALVLGS---TGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGF 457
           L+         +A+ D +   I+  V              +      D V++ +      
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVII-AGKGVDC 459

Query: 458 YRLINLLLEEFP 469
           Y++I    E +P
Sbjct: 460 YQIIQGKKESYP 471


>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
 gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
          Length = 450

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 129/351 (36%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------NKVILIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKA-SVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|256847517|ref|ZP_05552963.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716181|gb|EEU31156.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 436

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 147/413 (35%), Gaps = 54/413 (13%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIA 112
           H+F    ++KG  +V        + G     +    ++   +           ++ T + 
Sbjct: 54  HEFDPANLKKGMVVV-----QGNAFGDDHPEIVRAKELGLTIQTYPQTVEQVIESNTSVG 108

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKT+T  +L+  LS+++ T   IG    H            D  F +FE      
Sbjct: 109 IAGAHGKTSTTGLLSHVLSNVEPTSYLIGDGVGHG---------NPDSRFFVFEADEYRD 159

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + +      P  A++T I   H   F  I+++ ++  +  + ++K   IF   DD   
Sbjct: 160 HFLAY-----HPDYAIMTNIDFDHPDYFKDIDDVRASFEQYGQQVKKG--IFAWGDDPNL 212

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYH 291
             LK          +Y +G +   DF+     +    S  +     + +     H  G H
Sbjct: 213 RQLKVDV------PVYYYGTNPQDDFRAENIVRTPAGSTYDAYYHDQKLGTFTIHLYGEH 266

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +  +   D+    K L+ F+  +    R       G  T+ID+ Y  +P+
Sbjct: 267 SVLNSLAVVAVAYMEHVDLSAIQKELADFNGVK----RRFSESKLGDMTIIDD-YAHHPS 321

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSG-- 408
            + A I    Q  P  E   + V           Q++  +  + LS  + + V  + G  
Sbjct: 322 EINATIDAARQKYPDKE--LVVVF--QPHTYSRLQAYLKEFGQALSKADQTFVTPIFGSI 377

Query: 409 ------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                      L+  +P S  +   +TM+ L  +         VVV   +   
Sbjct: 378 RENAGHVSSADLEQLIPGSEDID-MKTMNKLLNY------HHAVVVFMGAGDI 423


>gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
 gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
          Length = 450

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 125/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP---ASQVAQTATAQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAADE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D     + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQIIKEILSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAAEKAG-VTYVDATDIADATRKAYELATQGDVVLL 421


>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
           Glutamate (Murd) Ligase From Streptococcus Agalactiae To
           1.5a
          Length = 451

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 155/419 (36%), Gaps = 54/419 (12%)

Query: 48  GPHYDGHDFILHAVQKGAGLV-------VVNTDMVASIGSLSIPVFGVDDVLGALNKLA- 99
           G  +D +      +++G  +V       +++ D    I +  IP      V  AL K   
Sbjct: 40  GKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYXIKNPGIPYNN-PXVKKALEKQIP 98

Query: 100 -----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
                  A L S++ +I ITGS GKTTT   +   L++  +     G+          + 
Sbjct: 99  VLTEVELAYLVSESQLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAGNIGFP---ASEVV 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +   D D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I 
Sbjct: 156 QAANDKDTLVXELSSFQLXGVKEF----RPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQ 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                +  + LN++    + L   + A    TI  F  ++  D    + KQ        +
Sbjct: 212 NQXSSSDFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------L 259

Query: 275 QLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +G+++  V      G H  +N L T+ +  +         + LS F   +    R + 
Sbjct: 260 FYKGENIXSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVK---HRLQS 316

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  +  ++S + N  + + A+S            ++ ++    + G        D+
Sbjct: 317 LGKVHGISFYNDSKSTNILATQKALSGFDNT-------KVILIAGGLDRGNEFDELIPDI 369

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
                   + H  + G     +K A  ++  V YS+ +D              GDV+++
Sbjct: 370 ------TGLKHXVVLGESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|260583459|ref|ZP_05851207.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
 gi|260158085|gb|EEW93153.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
          Length = 443

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 149/432 (34%), Gaps = 83/432 (19%)

Query: 36  SIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           +I   +   A  G  + D H+ ++ A +KG                  I +      LG 
Sbjct: 60  NIQEGQIVIA--GNAFPDSHEELVAAREKG------------------IEMIRYHKFLGE 99

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L K             +AITGS GKT+T  +L   LS+++ T   IG    H        
Sbjct: 100 LLK---------GYKSVAITGSHGKTSTTGLLAHVLSAMEPTSYLIGDGTGHGV------ 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 ++ + E        + +     +P  A++T I   H   ++ I+++ SA     
Sbjct: 145 ---EGSEYFVLEACEYKRHFMAY-----KPDYAIMTNIDFDHPDYYTDIDDVQSAFESFG 196

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             ++K   I    DD+    L   +       I  +G +K+ D      ++ +E S  +V
Sbjct: 197 RQVKKG--IIACGDDARLHELDVTT------PITYYGIAKSNDVVAENIEKDTEGSHFDV 248

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + GK   +      G H   N L  +    +   + +     L  F   + R    +  
Sbjct: 249 YIYGKFYGKFDIPTFGTHNILNALAIITFYYLNNFNPEELASNLKTFGGVKRRFSEKKIK 308

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 T+ID+ Y  +P+ ++A +    Q   +   + +AV          + +   + A
Sbjct: 309 E----ITVIDD-YAHHPSEIRATLDAARQ--KYPTKKIVAVF--QPHTFTRTIALLDEFA 359

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + LSL     V+L    + A       ++              + + +  G  V+     
Sbjct: 360 KALSL--ADDVYLC--DIFASVREKSGNVS----------IEDLAALVEGGATVL----- 400

Query: 454 SCGFYRLINLLL 465
                 +  LL+
Sbjct: 401 --KLENVSPLLV 410


>gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
 gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
          Length = 448

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 120/371 (32%), Gaps = 43/371 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GKTT   ++           A  G+          L  +       + E
Sbjct: 108 DAPIIAITGSNGKTTVTTLVADMARDAGYQVAVGGNIGTP-----ALDLLNTGARLYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L  L     A +  ++  H+  +        AK  IF G +      +N
Sbjct: 163 LSSFQLETTDELNALA----ATVLNVSDDHMDRYPDKMAYYQAKQRIFRGCQ---YAIVN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD+    +     A        FG ++ N +    +    S   W+   L         
Sbjct: 216 LDDALSTPM-----ARNTLRFICFGMNRVNPETFSTRDDSVSGHPWVTWGLDNLIRADEL 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N++  LG+       +D+ +     FH    R +  R          I++S
Sbjct: 271 GLVGRHNLSNVMAALGLGKAAGLPMDSMLATARAFHGLPHRCESLRLV---NGVEYINDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +  AA+  L+  +    G+ + + G   +  + S      LA+     +   V 
Sbjct: 328 KGTNVGATVAALDSLAPAA----GKIVLIAGGDGKGADFSP-----LADPA-RRHCRAVV 377

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------N 453
           L G     L++ L +    H   ++             GD V++    +S          
Sbjct: 378 LIGRDAAQLQEVLAQGTATHIENSLADAVASAARLAQPGDRVLLSPACASLDMFRDYIDR 437

Query: 454 SCGFYRLINLL 464
              F  L+  L
Sbjct: 438 GERFRTLVEAL 448


>gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
          Length = 467

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 132/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 134 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E   T  +N
Sbjct: 189 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAE---TAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 242 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 294 LVGRHNVTNVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 351 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 400 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|323341728|ref|ZP_08081961.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464153|gb|EFY09346.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 441

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 146/415 (35%), Gaps = 61/415 (14%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG---VDD-----------VLG 93
           G   D H F   A++  A  + +      +I   ++ + G   +DD            + 
Sbjct: 34  GSDIDRHFFTEDALR--ALNIPIVPFNKNNIKDNTVVIIGNAFLDDHEEVQAAKANPTVE 91

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
                    ++      IA++GS GKTTT  +L   LS  K+T   IG            
Sbjct: 92  TYRYHEYLGKMMDSYRTIAVSGSHGKTTTTTLLRDMLSYSKETGYLIGDGRGD------- 144

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +  D ++   E        + +     +P IA++T     H+  F  +E+  SA  E 
Sbjct: 145 --LQRDDEYFAVEACEFRRHFLAY-----KPKIAIMTNFEIDHVDYFKSVEDYLSAFKEF 197

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + +E    I +  DD  ++ L            +S+G  +    +  + ++ +  S  +
Sbjct: 198 AKNVES--LIVVWGDDPHYQDLSFDVET------WSYGFGEGNKIRATELEKTTTHSIFD 249

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V++ GK +       +G HM  + L  + +      + +      +      G  +R+  
Sbjct: 250 VEVDGKRIHRFNLPIVGDHMILDALAVIAVGLYEGIEPNDI---EAGLQTFTGAKRRFVI 306

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +    +  + Y  +P  ++  +       P    R+I  +     +G +   F  + 
Sbjct: 307 ETGKDNVYI--DDYAHHPTEVRVTLEAARTRYPD---RKIVGIFKPHRVGRVYY-FADEF 360

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           A+ LSL     V L  F  +   D     I +           ++Q  + D  VV
Sbjct: 361 ADALSL--ADEVCLCPFTSI---DDAEEGIDID--------ITYLQDRIEDSHVV 402


>gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 126/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  +     G+          +A+   + +
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP---ASQVAQTATEKE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P H+      E   +AK  + + + +  
Sbjct: 163 VLVMELSSFQLMGIE----AFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I LN++    + L  K+ A     +  F   +  D    +      +  + ++      
Sbjct: 219 VIVLNFNQDLAKELATKTKA----RVLPFSTIEKVDGAYLEDGLLKFKGEVVMRADE--- 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  + + + +   + LS F   +    R +          
Sbjct: 272 ---LGVPGSHNVENALATIAVAKVRSVENEVIKETLSAFGGVK---HRLQYVDEIQGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S            ++ ++    + G            V  +  +
Sbjct: 326 YNDSKSTNILATQKALSGFDN-------NKVILIAGGLDRGNEFDEL------VPHITGL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 373 KEMVILGESAPRVKRAADKAG-VPYVDAADVADATKKAFDLASPGDVVLL 421


>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
 gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
          Length = 467

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 134 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 189 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 242 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 294 LVGRHNVANVLTVLALLDSAEVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 351 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 400 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|312866147|ref|ZP_07726368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
 gi|311098551|gb|EFQ56774.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
          Length = 451

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 121/342 (35%), Gaps = 34/342 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            II ITGS GKTTT  M+   L++  ++    G+          +A    D D  + EL 
Sbjct: 113 PIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGFP---ASEVAMTATDQDTLVMELS 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +        PH+AVIT + P H+      EE  +AK  + + +     + LN++
Sbjct: 170 SFQLMGVETF----HPHMAVITNLMPTHIDYHGTFEEYVAAKWHLQDQMTAGDYLILNFN 225

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + L  K+ A    T+  F   +  D          ++ ++  + +           
Sbjct: 226 QDLAKDLATKTQA----TVVPFSTQEEVD------GAYLKEGYLYFKGEQVMAADSIGVP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L T+ +  +     +   + L+ F   +    R +           ++S + 
Sbjct: 276 GSHNVENALATIAVAKLSGIANEVIAETLASFGGVK---HRLQSLGQVQGVAFYNDSKST 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + + A+S           + I + G   + G        D+        +  + + G
Sbjct: 333 NILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------KGLKKMVILG 379

Query: 409 FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                LK A     +    ++ +             GDVV++
Sbjct: 380 QSAPRLKRAADKAGVPYLDAKDVKEATWIAFEEAASGDVVLL 421


>gi|227878134|ref|ZP_03996113.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256850137|ref|ZP_05555567.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047700|ref|ZP_06020653.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
 gi|227862261|gb|EEJ69801.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256713109|gb|EEU28100.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|260571985|gb|EEX28552.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
          Length = 437

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 128/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVADSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F    +  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + +  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNSTAVIAVAYTEKVPMDDIREGMLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|283768879|ref|ZP_06341790.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
 gi|283104665|gb|EFC06038.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
          Length = 458

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 145/416 (34%), Gaps = 48/416 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +         L+IP+    D+L  + +             IAI G+ GKTTT  M
Sbjct: 76  AAIHPDNPEYQQAMKLNIPLMNRKDLLAEVMEHYH--------NSIAIAGTHGKTTTTAM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+                +  I +     ++  +V  G  E  ++   E       +RP 
Sbjct: 128 LSYIF--------LAAELDPTISIGAHFKKIHGNVRIGHSEAFLAEACEYTNSFLALRPL 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            ++I  I   HL  F  +++I ++  +        G + ++      E +    H     
Sbjct: 180 ASIILNIEEDHLDFFKDLQDIRNSFHQFVLNTSSEGALIIHSQIDHVEEIVEGYHG---- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
            +  FG +K  D   +  +         EV ++ + +  +     G H   N L  +G+ 
Sbjct: 236 QVIQFGLNKG-DLCAKNIQHLRHGGNQFEVWMRSERLGSIELPTGGKHNITNALAAIGVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   + L  F   EG  +R+          ++D+ Y  +P  ++A +++    
Sbjct: 295 ISFGVPFEAIQQGLKEF---EGADRRFEKKGFYQGAEIVDD-YAHHPQEIQATLNMAKDY 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------ALKD 416
                 R I V          ++    + AEVLS   +  V L+  +            D
Sbjct: 351 P---HQRLIMVF--QPHTYSRTKFLFEEFAEVLSQ--VDQVVLAPIYAAREIDDGSISSD 403

Query: 417 ALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            L + I+      +       +  +++  L +GD+ +   + +   Y +   L++E
Sbjct: 404 LLAKRINELKGNAVSLGSFVEIKDYLKKQLQEGDLCLTVGAGNV--YEIGEELIQE 457


>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
 gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
          Length = 450

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 127/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIKGIK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  ++ +             GDVV++
Sbjct: 372 LKRIVILGQSAERVKRAADKAGVAYVDAKDIADATRKAYELATQGDVVLL 421


>gi|239637938|ref|ZP_04678899.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri
           L37603]
 gi|239596501|gb|EEQ79037.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri
           L37603]
          Length = 437

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 134/376 (35%), Gaps = 50/376 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +        + ++ T +A+TG+ GKT+T  +L+  ++  KKT   IG          
Sbjct: 85  LDVIRYHDFLGHVINQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG-------- 136

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D+  FE       E R       P  A++T I   H   F  ++++  A  
Sbjct: 137 -TGMGLPGSDYFAFEA-----CEYRRHFLSYDPDYAIMTNIDFDHPDYFKDVDDVFDAFQ 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+   ++K   I    DD     L+A         IY +G ++  D   +  +   + S 
Sbjct: 191 EMAHNVKK--AIIAWGDDEHLRKLEADV------PIYYYGFNETDDVYAKNIQITEQGSQ 242

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V + G+          G H   N L  + I  +   +VD   +AL  F   + R    
Sbjct: 243 FDVYINGEFYGQFLSPQYGDHNILNTLAVVTISYLEKMNVDNIKEALETFGGVKRRFNET 302

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + +       ++ + Y  +P  + A I    +  P  E   IAV          +Q+F  
Sbjct: 303 KVSNQ-----VLVDDYAHHPREINATIETARKKYPQKE--VIAVF--QPHTFSRTQAFLE 353

Query: 391 DLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           + A  LS     HV+L           G   L ++D + R       +  +     ++  
Sbjct: 354 EFATSLS--AADHVFLCEIFGSIRENTGE--LTIQDLINRIDGSALID--ESGIDVLEK- 406

Query: 441 LVDGDVVVVKSSNSCG 456
             +  V++   +    
Sbjct: 407 -FENAVILFMGAGDIQ 421


>gi|194335050|ref|YP_002016910.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris aestuarii
           DSM 271]
 gi|226711871|sp|B4S6Q8|MURC_PROA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194312868|gb|ACF47263.1| UDP-N-acetylmuramate/alanine ligase [Prosthecochloris aestuarii DSM
           271]
          Length = 464

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 146/417 (35%), Gaps = 56/417 (13%)

Query: 64  GAGLVVVNTDMVASIGSLSI--------PVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           GA  VVV +  V    ++ I        PV   D++LG L +             + + G
Sbjct: 64  GACDVVVYSSAVRPESNVEILAAEKKGIPVIKRDEMLGELMRFRSG---------VCVAG 114

Query: 116 SVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           + GKTTT  M+   L    ++    IG  ++++     +     +  + + E       E
Sbjct: 115 THGKTTTTAMIATMLIEAGESPTVMIGGISDYLKGSTVVG----NGKYMVIEA-----DE 165

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P IAVI ++   H   ++ ++E+  A  +    +   G +    D      
Sbjct: 166 YDRAFLKLTPSIAVINSLEAEHADTYATLDELRDAFIDFANSVPFYGKVICCVDWPEVRR 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           + +  +    +   ++G  + AD   R  +    +++  V      + +      G H  
Sbjct: 226 IVSGFN----RRYSTYGIDETADLMARDIRIEKNETFFSVDYMRSHLADFRIAVPGRHNV 281

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   +   V+  +  L+ F    G  +R++         +I + Y  +P+ +
Sbjct: 282 HNALAAIAVGLEMGLPVERLVSGLAAFS---GMRRRFQIRYTSPDGPIIVDDYAHHPSEV 338

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---- 409
           KAA+       P  E   IAV      +   +  F  +    LS      V ++G     
Sbjct: 339 KAAVKAAKAGWPERE--VIAVF--QPHLYSRTADFAGEFGWALS--GADRVCIAGIYPAR 392

Query: 410 -----------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                       ++A    +  + +V + E    L   +    V G +++   +   
Sbjct: 393 EDPRNFPGISGELVAEAARVAGASNVSFFEDGKELSAHLAGYCVPGMLMLFMGAGDI 449


>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525523|gb|EEF94628.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
          Length = 446

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 121/352 (34%), Gaps = 38/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDV 160
            ++  K   IA+TG+ GKTTT  ++   L +  +     G+Y   +  V L       + 
Sbjct: 102 YKVAKKQHYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGIPYCEVVLNEHLYEEEG 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E+    L +I       +P +A +  + P HL     ++E  ++K  I+   ++ 
Sbjct: 162 HDIVVEMSNFQLIDIEEF----KPEVATVLNLTPDHLDYMDSLDEYYASKMRIYMNQDEK 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                N DD   +   AK        I +F      D +L+            +  +G+ 
Sbjct: 218 DLFINNSDDETLQSYLAKYPVPS--RIETFSVKGQGDVELKDNA---------IYYKGQK 266

Query: 281 M--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +        +G H   NM++ +   + +   +D+    L+ F   E    R         
Sbjct: 267 VIDRDEIKIVGLHNVANMMVAIAACASVGVSLDSIHDTLAAFKGVE---HRIEFVRELDG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  +   AI    +         I ++G            ++DL +V   
Sbjct: 324 VRYYNDSKGTNTDAAVIAIKAFEK-------PVILLMG--------GHEKNLDLKDVREQ 368

Query: 399 YN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              I  +   G         +    H    + M    L  +    +GDVV++
Sbjct: 369 NPLIKTLICFGETKERFSKDMA-HPHTIVVDHMKDAILKAKEIAKEGDVVLL 419


>gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis MC58]
 gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis MC58]
 gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
 gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis CU385]
 gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
          Length = 445

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 122/346 (35%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++      +   
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IVTQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +      + +         V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTPLRDALVGK------AKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T+        +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
 gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
          Length = 572

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 170/463 (36%), Gaps = 61/463 (13%)

Query: 6   TFHDL---LQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +L   L+A+  H +      +  V GIS+DSR++ P + + A+ G    G  F   A
Sbjct: 33  TVTELVEHLEALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKA 92

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVL----GALNKLAVAARLRSKATIIA 112
           ++  A  ++ +T     I   ++ +      V D L    G+L  L   ++        A
Sbjct: 93  LEAQAHAILTDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYA 152

Query: 113 ITGSVGKTTTKEMLTIALSSIKK-TYACIGSYN---NHIGVPLTLARMPVDVDFGIF--- 165
           +TG+ GKTTT  ML     +  K     IG+     + + VP  L          +    
Sbjct: 153 VTGTNGKTTTTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIM 212

Query: 166 -ELGMSHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            E G+SH   +   +H +  H        ++  T +   HL     ++    +KA++F  
Sbjct: 213 GERGVSHAA-MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP 271

Query: 217 LEKTGTIFLNYDDSFFELLKAKSH-----ALGIKTIYSFGKS--------KNADFQLRKW 263
            E+T    +  DD + E +   +         ++ +  +G             D+ +   
Sbjct: 272 -ERTECAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINV 330

Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-- 320
           ++        +    G ++    H        N  +   +V I  ++ +  I   ++   
Sbjct: 331 ERDGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADG 390

Query: 321 ----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   GR +    A +    T++D  +  NP  +  A+     +   G GR I V G
Sbjct: 391 TALTPIVPGRMQLISLAPH----TIVD--FAHNPDGLTRALEA---MDRPGGGRVIIVFG 441

Query: 377 DMCEMGELSQSFHIDL-AEVLSLYNISHVWLSGFHVLALKDAL 418
              E   L +    ++ A+   +  ++     G     +++A+
Sbjct: 442 ATGERDHLKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAV 484


>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
 gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
          Length = 447

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 124/356 (34%), Gaps = 36/356 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++ +A RL      IAITG+ GKTTT  ++   L +  +     G+    +   +    +
Sbjct: 97  EIELAYRLSQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGNVGTPLSELVLNEDL 156

Query: 157 PVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               D+  + E+    L +I        P +A I  + P HL   + +EE  ++K  I+ 
Sbjct: 157 LHKSDYDVVLEMSNFQLLDID----AFHPRVATIINLTPDHLDYMASLEEYYTSKTRIYM 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +       N DD   +    K        I SF   + AD  ++      +   + + 
Sbjct: 213 NQDHNDIYLQNKDDVVLKEYLQKYPPQA--KIVSFSLEQEADCMIKNDAIYYQGQHI-IN 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L           +G H  QNM++ +        DV +    L+ F   E    R      
Sbjct: 270 LDD------IKIVGRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTGVE---HRIEFVRE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  +   A+          E   I ++G   +  +L      ++A  
Sbjct: 321 YQGVKYYNDSKATNTDAAIIALKSF-------EKPVILLMGGHEKGLDL-----REMANY 368

Query: 396 LSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ISH+   G         +  P +  V Y    D +    +     GDVV++
Sbjct: 369 --QKQISHLICFGEAGERFAKDMKCPNTDIVKY--MKDAIIKA-KELAKSGDVVLL 419


>gi|282897750|ref|ZP_06305749.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
 gi|281197429|gb|EFA72326.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
          Length = 489

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 136/380 (35%), Gaps = 48/380 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTY 137
            L  P+    DVL AL               IA+ G+ GKTTT  M+   L  + +  T 
Sbjct: 117 ELGCPILHRSDVLAALIA---------DYHSIAVAGTHGKTTTSSMIGYMLLQAGLDPTI 167

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G  N   G          +  + + E   S    ++       P I +IT I   H 
Sbjct: 168 VVGGEVNAWEGNAR-----LGESKYLVAEADESDGSLVKHT-----PAIGIITNIELDHP 217

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            +++ +E++         G +    +  + D             L     YS    + AD
Sbjct: 218 DHYATLEQVVETFQTFARGCQ---VVVGSIDCDIVR------DRLKPGISYSLDPDQGAD 268

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           + +      ++ +   V  +GKS+ V+    +G H   N L  + +  +L  +     K 
Sbjct: 269 YTVTNIDYRADGTTALVWEKGKSLGVLSLQLLGRHNLSNALAAVAVGRVLNLEFGEIAKG 328

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F   EG  +R+         T ID+ Y  +P+ ++A ++  +++      R + +  
Sbjct: 329 LATF---EGARRRFEFRGEVDGITFIDD-YAHHPSEIRATLAA-ARLQAKAGQRVVGIF- 382

Query: 377 DMCEMGELSQSFHIDLAE---VLSLYNISHVWLSGFHV-------LALKDALPRSIHVHY 426
                    ++F  + A       L  ++ ++ +G              +   +   V Y
Sbjct: 383 -QPHRYSRVRTFFDEFANCFTHADLVVLTDIYSAGEPSCEQITGEKLAAEIAKQHPQVIY 441

Query: 427 SETMDGLFLFIQSSLVDGDV 446
             ++  +   + S+L  GD+
Sbjct: 442 QPSLALIPRVLLSTLRPGDL 461


>gi|226307038|ref|YP_002766998.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
 gi|259509779|sp|C1A0X4|MURC_RHOE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226186155|dbj|BAH34259.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
          Length = 502

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 146/440 (33%), Gaps = 65/440 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV     VL +L +               ++G+ GKT+T  M
Sbjct: 80  AAIPKDNPELVEAARRGIPVILRPAVLASLMQGNRTFL---------VSGTHGKTSTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            ++    V   L     +   G  ++ ++   E         P+
Sbjct: 131 LVVALQHCG--------FDPSFAVGGELNEAGTNAHHGSGDVFVAEADESDGSLLQYDPN 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T I   HL  F  +E       +  + L   G +    DD     L  +  A G  
Sbjct: 183 VIVVTNIEADHLDYFGSVEAYVKVFDDFVDKLRPGGLLIACLDDPGSADLAKRIVASGRS 242

Query: 246 --TIYSFGKSK----------------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH- 286
              +  +G +                     +L  +        ++ QL G++       
Sbjct: 243 DIRVLGYGSADAQEVEAGTAFEPVDGVEVGVRLLGFHAHDVGGVLQFQLAGENAARTVRM 302

Query: 287 -GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HMA N L  L       A+ +  ++ L+ F    G  +R++    +    + D+ 
Sbjct: 303 AVPGRHMALNALAALLAARDAGAETEEIVEGLAGFG---GVHRRFQFTGRERGVRVFDD- 358

Query: 346 YNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
           Y  +P  ++A +   + +         +    GR I V      +   + +F ++ A+  
Sbjct: 359 YAHHPTEVRAVLGAAADLVRPEDDSSSTNSAAGRVIVVF--QPHLYSRTAAFAVEFAQAL 416

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      + G     +  ++ +   VHY   +      + +    GD+V
Sbjct: 417 DLADEVVVLDVYGAREEPMPGVSGALVAQSVTK--PVHYQPDLSQAPKQVAALAHPGDIV 474

Query: 448 VVKSSNSCGF--YRLINLLL 465
           +   +        ++++ L 
Sbjct: 475 ITMGAGDVTMLGKQILDALR 494


>gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B
           str. Eklund 17B]
 gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 460

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 126/359 (35%), Gaps = 38/359 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI+G+ GKTT   ML+              + +  I V   L  +  +   G  +  ++
Sbjct: 114 VAISGAHGKTTCTSMLSNIT--------LKANLDPTILVGGELDIIGGNFRIGSSDYFIT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E +       P++ VI  I   HL  +  I+EI     +  + +   G +     DS
Sbjct: 166 EACEYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPNDGYLIGYVGDS 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEV-QLQGKSMEVVHHGI 288
             + +  K+         S+G  +NAD   R      +  +  +V +   K  ++     
Sbjct: 226 RVKEILFKAKC----NTLSYGF-ENADVTARNITFNEKGCASFDVYKHNDKLFDLTLSNP 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L ++ +  I   + D  I         +G  KR+         T+ID+ Y  
Sbjct: 281 GEHNILNALSSICVSLIFDVNYDDIICG---LSECKGAHKRFEYKGEVNGVTVIDD-YAH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  +KA ++   +I  +   +   V          +++   +  +    ++   V L  
Sbjct: 337 HPVEIKATLNTSKKIPHN---KTFCVF--QPHTYTRTKTLFDEFTDAF--FDADEVVLMD 389

Query: 409 FHVLALKD------------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +    KD               + +      + D    ++++S    D+++   +   
Sbjct: 390 IYAAREKDTGLVSSNDLGVALRAKGVKCTNVHSHDEALEYLKNSAKPNDLLLTVGAGDV 448


>gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 484

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 139/405 (34%), Gaps = 57/405 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D         I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITTGLSFYVSEIDY-----GADI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRP 184
           + N  +               L L RM        +   + E+       +    + +  
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAY--LTKRVYGLTF 202

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + V   I+P H+        E+    K  + E    +  + +N     F ++K +   +
Sbjct: 203 DVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYI 259

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLG 301
                  + ++             +E       ++GK         IG    +N +    
Sbjct: 260 PHDFYGDYSEN-----------VITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ 
Sbjct: 309 ACLRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 364 E---HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|289443662|ref|ZP_06433406.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46]
 gi|289416581|gb|EFD13821.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46]
          Length = 258

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 22/252 (8%)

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            A    L    +    +    D            +    +       EV     G H   
Sbjct: 1   MAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVT 60

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +     A V+    AL+   P      R +        T+ID++YNANP SM+
Sbjct: 61  NALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMR 118

Query: 355 AAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--- 409
           A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S + + G    
Sbjct: 119 AGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRS 178

Query: 410 ----HVLALKDALPRSIHVHY----------SETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               H  A+ +    S                   D     +++ L  GDVV+VK+SN+ 
Sbjct: 179 ISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAA 238

Query: 456 GFYRLINLLLEE 467
           G   + + L+ +
Sbjct: 239 GLGAVADALVAD 250


>gi|37521885|ref|NP_925262.1| UDP-N-acetylmuramate--L-alanine ligase [Gloeobacter violaceus PCC
           7421]
 gi|44888167|sp|Q7NI67|MURC_GLOVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|35212884|dbj|BAC90257.1| UDP-N-acetylmuramate-alanine ligase [Gloeobacter violaceus PCC
           7421]
          Length = 460

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 143/395 (36%), Gaps = 44/395 (11%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYN 144
             V      L +LA   R+      I ++G+ GKTTT  ++ + L          +G   
Sbjct: 95  VAVRHRAQVLAQLAEGYRM------IGVSGTHGKTTTSSLIAVMLYHCGLDPTVVVGGEV 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + +G    L   P      + E+  S    +     L  P +AV+T I   HL +++ +E
Sbjct: 149 DELGGNARLGSGP----HLVAEVDESDGSLV-----LFSPEVAVVTNIEGDHLDHYANLE 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +I  A  +          +    D       +A    + +   YS      AD+   +  
Sbjct: 200 QIVEAFQQYANQAR---VVVGCLD------CQAVRDRMPLTVSYSLDGHPQADYTADRVS 250

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             ++ +   V  +G+ + E+    +G H   N L  + +   L    +      +     
Sbjct: 251 FTAQGTTARVLERGEVLGELSLKLLGRHNLANALAAVAVGRYLGLSFEQIA---AGLREF 307

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAI--------SVLSQISPHGEGRRIAVL 375
            G  +R+     +     +D+ Y  +P+ ++A +         V++   PH   R   +L
Sbjct: 308 RGAHRRFERIGERDDIVFVDD-YAHHPSEVRATLAAARLQGRRVVAVFQPHRYSRSQLLL 366

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            +         +  + + E+ +    + + +SG  V   +        VH+  T D L  
Sbjct: 367 DEFG--TAFGDADAVVVTEIYAAGEANTLGVSGELV--ARRIAAHHPDVHFEATSDSLKR 422

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            +++ L  GD+ +   +      R+I  LL+    
Sbjct: 423 HLEAHLRPGDLALFLGAG--NLNRIIPELLQRAEP 455


>gi|309808297|ref|ZP_07702203.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           01V1-a]
 gi|308168444|gb|EFO70556.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           01V1-a]
          Length = 459

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 131/373 (35%), Gaps = 51/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I I+GS GKT+T  +L   L  +  T   IG             +   D  F ++E
Sbjct: 124 QHTSIGISGSHGKTSTTGLLAHVLGQLAPTSFLIGDG---------TGKAIKDSRFFVYE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P   ++T +   H   F   ++ ASA     E  +K   +F+ 
Sbjct: 175 A-----DEYRRHFLAYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVW 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    ++           Y++G +   DFQ    ++    S  +V+     + +   
Sbjct: 228 GDDTRLNDIQVSIPK------YTYGFNNTDDFQAYDIQKNITGSTFKVKYHDIDLGQFEI 281

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +  I    +D      +     +G  +R+    + G   +ID+ 
Sbjct: 282 HLFGDHNILNTTAVIAVAYIEKESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD- 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404
           Y  +P  MKA +    Q  P+    +I V          +  F     E+L   + ++V 
Sbjct: 337 YAHHPTEMKATLQAARQKYPN----KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVT 392

Query: 405 WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            + G             L   +P S  V   + +  L  F        D V+V   +   
Sbjct: 393 PIFGSARENHGNISSQDLTKRIPNS-EVISLDNIADLTKF-------KDAVLVFMGAGDI 444

Query: 456 GFYRLI-NLLLEE 467
             Y +    LLE+
Sbjct: 445 TKYEVAYEALLEQ 457


>gi|315638156|ref|ZP_07893338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
 gi|315481692|gb|EFU72314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
          Length = 477

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 139/364 (38%), Gaps = 34/364 (9%)

Query: 90  DVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D+L A   L  A       ++ TII IT S GKT+ K  L   L     T+    S N  
Sbjct: 136 DLLQARYFLKKAKHKILKNNRLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTL 195

Query: 147 IGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +G+   +   +  +    I E G    G+I  L+  + P I +I  I  AHL  F  IE 
Sbjct: 196 MGIVKDINENLQENTQIYIAEAGARVKGDILELSSFLEPQICIIGEIGGAHLEYFKNIEN 255

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
               K E  +  ++    FL         LK     +   TIY        D  L  +  
Sbjct: 256 TRETKLEALQS-KRLKQAFL-----HSSTLKKDESNM---TIY--------DNLLLNFNA 298

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                   ++L  K        +G   A+N+   +   + L   ++T  K ++     E 
Sbjct: 299 NLNGIDFSLRLNDKEEFFQSSILGAFNAENLCACVCCANYLGVKLETIKKQIANLKAVEH 358

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +     +++    +ID+ +N N   M  +      ++ + +GRR+ V   + E    S
Sbjct: 359 RLQ----IISKEPKFIIDDGFNGNFKGMSES----YHLAKNYQGRRVLVTPGIIEG---S 407

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  +  LA++++  +   V +S     AL +     I+    +    L   +     +GD
Sbjct: 408 EEDNKKLAKIINE-SFDLVIISAHINAALFEK-ELKINKIILKEKAKLVEILAKHTKNGD 465

Query: 446 VVVV 449
           +++ 
Sbjct: 466 LILF 469


>gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 05ZYH33]
 gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 98HAH33]
 gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           05ZYH33]
 gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           98HAH33]
 gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis JS14]
          Length = 481

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 161/459 (35%), Gaps = 63/459 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + +S DSR+++P   FFA KG  +   +F+  A++ G  L    +++   +G   I
Sbjct: 32  DVQFDALSYDSRTVSPMTLFFA-KGLAFKK-EFLEKAIEAG--LAFYVSEINYEVG---I 84

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--AC 139
           P   V D+  A++   +      + +  ++A TG+ GKTT        L   KK    + 
Sbjct: 85  PAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFTGTKGKTTAAYFAFNILKQSKKPAMLST 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFL---THLVRPHIA 187
           + +  +      +    P  +D           GM+HL        +L    + +   + 
Sbjct: 145 MNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMTHLIMEVSSQAYLVKRVYGLTFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + +    +  + +N     FE++K +       
Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYHKRLLMDN---SRAVIVNAGMDHFEVVKEQVS----- 256

Query: 246 TIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                  SK+ DF       Q S+ +  +    GK +       IG    +N +      
Sbjct: 257 -------SKDHDFYGPTSENQISQSAGFDFTATGKLAGHYDIQLIGGFNQENAIAAGLAC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A ++     ++        G+        G    +D  Y  N  S+K  I V+ + 
Sbjct: 310 LRLGASLEDIHTGIAQ---TNVPGRMEVLTQQNGAKVFVD--YAHNGDSVKKLIDVVLE- 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSI 422
             H  G+   +LG     GE  +    D   +L+ Y    V L+          A+   I
Sbjct: 364 --HQTGKVFLILGAPGNKGESRR---KDFGLLLNDYPQIEVILTADDPNREDPAAIAEQI 418

Query: 423 HVH------YSETMDGLFL-FIQSSLVDGDVVVV--KSS 452
             H      +    +      +  +    D V++  K +
Sbjct: 419 RAHMTRTSNFILDREEAIRTAMSQTSSPKDAVIIAGKGA 457


>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---GGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----ISTQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +        +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAAGLPREALLEHIKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYTQAEAGDIVLL 418


>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
          Length = 434

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 133/346 (38%), Gaps = 40/346 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   IIAITGS GK+T   ++     +        G+          L+ +  + D  
Sbjct: 102 REASKPIIAITGSNGKSTVTTLVYEMAKASGLKVGMGGNIGIP-----ALSLLEQNYDLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H+  +  +E+   AK  I+       T 
Sbjct: 157 VLELSSFQL----ETTYSLKATSATVLNVTEDHMDRYIDLEDYRQAKLRIYHN---AKTA 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D         +    +K+  SFG+ +N+D+ L   K  + + +   + +      
Sbjct: 210 IVNTEDPL-------TTIDSLKSAVSFGE-ENSDYWL---KTENGKQYFMAKNEMILPCD 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L  + +       ++    AL  F    G   R++ A        I+
Sbjct: 259 EIKLVGRHNYMNVLAAIALAQAANVSLEGIRTALREFS---GLDHRFQLAHFANGVYWIN 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L        G    +LG     G+  ++   +L+ ++   +I +
Sbjct: 316 DSKATNVGSTVAALTGLQ-----VAGHLHLLLG-----GDGKEADFSELSTLIQQPHI-Y 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S      +TM+     ++ +L +GD+V++
Sbjct: 365 CYCFGKDGAQLAKLSQQS---QLFDTMEQAINALRPNLKEGDMVLL 407


>gi|116617821|ref|YP_818192.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|227432302|ref|ZP_03914295.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|122271978|sp|Q03YA3|MURC_LEUMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116096668|gb|ABJ61819.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|227351908|gb|EEJ42141.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 444

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 31/272 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+ T IA+ G+ GKT+T  +L   L +I  T   IG             R   +  F + 
Sbjct: 102 SQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDG---------TGRGVPNSQFFVV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E R       P  A++T I   H   ++GIE++ SA A+    ++K   IF 
Sbjct: 153 EA-----DEYRRHFKDYAPDYAILTNIDFDHPDYYTGIEDVTSAFADFANNVKK--AIFA 205

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
             DD     LK  +       +Y +G + +  DF      + ++ S  +V  +GK + E 
Sbjct: 206 WGDDEHLRSLKPSAD------VYYYGVNPERDDFVATNIHKSTQGSHFDVVFRGKDLGEF 259

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +  +   D+D   + L  +   + R    + A      T+ID
Sbjct: 260 AVPLFGQHGILNALAVIAVSYMEEVDLDLIRQYLLTYQGVKRRFSEKQIA----DITVID 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           + Y  +P  + A +    Q  P+   + IA+ 
Sbjct: 316 D-YAHHPTEITATLDAARQKYPNK--KIIAIF 344


>gi|223985747|ref|ZP_03635791.1| hypothetical protein HOLDEFILI_03097 [Holdemania filiformis DSM
           12042]
 gi|223962257|gb|EEF66725.1| hypothetical protein HOLDEFILI_03097 [Holdemania filiformis DSM
           12042]
          Length = 435

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 119/354 (33%), Gaps = 41/354 (11%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        ++ A+  +  +  +   + LGAL K           T + + GS GKTTT 
Sbjct: 65  GNAFKEDFPEVAAARSNPKVTCYRYHEYLGALMK---------DYTSLCVAGSHGKTTTT 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML   +  I  T   IG  +  I           D  +   E       E R       
Sbjct: 116 GMLAAMMDEIAPTGHLIGDGSGEIH---------PDSQYLAVEA-----CEYRRHFLAYH 161

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT     H+  F    + A A  E    ++K   + L  DD     L+       
Sbjct: 162 PDYAVITNADLDHVDYFKTEADYAKAYEEFASQVKKG--LVLFGDDPKVRALRIDPKV-- 217

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
             T Y +G     DFQ     + SE    +V  QGK         +G H+  N L  + +
Sbjct: 218 --THYYYGVDDGNDFQAVNIVETSEDMHFDVLFQGKPQGHFDLPFVGRHLLWNSLGVIAL 275

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     +     L+ F   +      R  + +    +  + Y  +P  +   I    +
Sbjct: 276 GLLEGYTAEQIEPGLASFKGTK-----RRFTIEKHGENVFVDDYAHHPTEVSITIDAARK 330

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             P    + IA+     +   +S+ FH       +L     V+L  F  +  K+
Sbjct: 331 RFP--GKKLIAIF----KPHRVSRVFHFADDFAAALKKADEVYLCDFTSIDDKE 378


>gi|332295509|ref|YP_004437432.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
 gi|332178612|gb|AEE14301.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
          Length = 478

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 147/406 (36%), Gaps = 51/406 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G +  +   + S    +IPV     +L  + +         +   IA+ G+ GKTTT  M
Sbjct: 76  GAIPSDNCELLSARQRNIPVLSRAQMLSKIIE---------QKFSIAVAGTHGKTTTTSM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTH 180
           ++  L+         G  +    +   L     +   G     + E   S    + +   
Sbjct: 127 ISKMLND--------GGLDPSFLIGGELNDYGANARHGSGPYIVIEADESDGSFLNY--- 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P+IAVIT I   H S FS ++ +     +  +G+ + G + +  D +    +  +  
Sbjct: 176 --KPNIAVITNIDFDHPSFFSDLKMVEDYFEKFMQGISEDGKLVVCGDHAVTRSVAER-- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
            +  K    +G   N   Q +        S+ ++ ++G+ + E+  +  G H   N L  
Sbjct: 232 -ITDKEKIFYGFGDNNQVQCKNVILSGFGSYYDLYIEGEKIGEITLNVPGIHNVLNSLAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +  I+  D  +A  +++ F    G  +R+           I + Y  +P  + A ++ 
Sbjct: 291 FSVAKIIGLDFVSAFDSIASFS---GVRRRFELKCKD---PYIIDDYAHHPEEINAVLNT 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVL--AL 414
              I    +   + +          ++ F  +  ++L+  +   +  V+ +G       L
Sbjct: 345 ARSI--FKDKNLVLIF--QPHRFSRTEKFLNNFCDILTKADTLLLFDVFPAGEKTANPYL 400

Query: 415 KDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + L            +  + D ++  IQ    + +V +   +   
Sbjct: 401 GNKLFEECKKRMKDNVFFVSKDSIYELIQEIHGEKNVYLFMGAGDI 446


>gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 464

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 128/387 (33%), Gaps = 37/387 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGP-HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           N  S D+R++   E FF +    + DG D+   A++K    ++         G       
Sbjct: 11  NNCSADTRTLRKSEIFFDLGSKSNKDG-DYFFKALKKKPLFIITQNQKRNLSGKNF---I 66

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V ++     K       +     IA+TG+ GKT+        L+ +      IG+    
Sbjct: 67  IVKNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGIKVGSIGTLGVF 126

Query: 147 IGVPLTLARMPVD----------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                +   +                   ++  I E     L + R     +     + T
Sbjct: 127 ENTKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRL--EKINFDCGIFT 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +   HL     +++  ++K  +F+ L +K G +    +   F LL   S    +  + S
Sbjct: 185 NLTHDHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKKL-NLLS 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G+  N   ++   K   + + +++ + GK   +    IG    +N L            
Sbjct: 244 YGRKGNI-IKIISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLACYSSGIS 302

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   +  S      G   R +    Q    +ID  Y   P +++     + +I      
Sbjct: 303 FEKIFRICSRIDNPPG---RLQLFKKQNKTVIID--YAHTPDALE---KTIIEIQKFFNK 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVL 396
           +   V G     G+        + ++ 
Sbjct: 355 KINIVFGC---GGDRDHQKRKAMGKIA 378


>gi|225551700|ref|ZP_03772644.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
 gi|225371727|gb|EEH01153.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
          Length = 468

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +VLG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEVLGELSRKHY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNF-----SPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +  + L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYIDNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      S+            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSKYFCFSFL---GFLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L  ++ 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLSIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|229822993|ref|ZP_04449063.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
 gi|229787806|gb|EEP23920.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
          Length = 463

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 122/357 (34%), Gaps = 42/357 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            I+A+TGS GKTTT   +   L+   +  A   G+        L  A      D  + E+
Sbjct: 114 PIVAVTGSNGKTTTTSWIHQMLAHRPQGQARLAGNIGVP---SLVTANQASPDDVIVMEV 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T   RP IAV+T +  AHL      E   +AK ++            N 
Sbjct: 171 SSFQLMG----TEKFRPSIAVMTNLTSAHLDYHGSQEGYEAAKFKLVANQTAADFWVYNV 226

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH- 286
            D     L+A ++ +  + +       + + Q +   +  +  +      G+ +  V   
Sbjct: 227 TDP---TLRAHANQVKAQQVPFSHLPASPEVQAQGAYRQGDALYFR----GEEVAKVSQI 279

Query: 287 -GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN L  + +  +L           +      G   R +           ++S
Sbjct: 280 GVPGDHNVQNALAAIAVAKLLGVSNQAI---QAELSAYAGMPHRLQPIAKSAGRIFYNDS 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
            + N   M AA + L   +       I  +G   + G        H++        ++  
Sbjct: 337 KSTN---MVAATTALKSFTQP-----IRYIGGGLDRGNEFDDLIPHLE--------HVVE 380

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +L G     +  A  ++    +H  E +D   L    +   G+VV+   S SC  +
Sbjct: 381 AFLYGESKEKMARAFQQAGVPAIHLYENLDQASLAAYEAAQAGEVVLF--SPSCASW 435


>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 431

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 131/368 (35%), Gaps = 44/368 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D  +  ++ +  A+       I+AITG+ GKTT   ++   L+ + K+YA +G+    + 
Sbjct: 72  DKNIKIISDIEFASYFYKTKDIVAITGTNGKTTITTLVNEILNKVGKSYA-VGNIGVGVM 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                  +  D  F + E     L  I        PH+AVIT I   HL     +E    
Sbjct: 131 DV-----IDYDPKFIVCEASSFQLAYIDKF----HPHVAVITNITSDHLDWHKTVENYRK 181

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK  I++ LE+   + L     + + + A     G+K  + +         L +    ++
Sbjct: 182 AKENIYKNLEEDDFLILGASCDYVKTINA-----GVKNTFYYSYDD-----LGRPGLFTK 231

Query: 269 QSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              +  +    ++E +         G H  +N +  +     L  D++  +  +  F   
Sbjct: 232 DEEIIFRHFDGTLENIMKVSDVFIKGRHNIENAMAAILSAYSLGVDLEIIVDTIKNFKGV 291

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R          +  ++S   NP S   A+            + + ++G   +  +
Sbjct: 292 E---HRIEFVRTFNGISYYNDSKGTNPDSTDVALKAFE--------KSVLIIGGYDKGSD 340

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +          +   I+ + + G      +K+A    I     + M+       +   
Sbjct: 341 FKKLLED------NKDKITSLVVMGATSELIIKEATELGIETTRVKDMEEAVSVATTIAR 394

Query: 443 DGD-VVVV 449
           +   VV++
Sbjct: 395 ENHSVVLL 402


>gi|289640743|ref|ZP_06472914.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509319|gb|EFD30247.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 482

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 145/396 (36%), Gaps = 34/396 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  +++ A  A L      +A+ G+ GKTTT  M+T+AL +           +    +  
Sbjct: 100 LRVVSRSAALAALMRGTRGLAVAGTHGKTTTSLMVTVALQACGA--------DPSFVIGS 151

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +     +   G  E+ ++   E      L+ P  A++T +   HL  +   E++ +A A
Sbjct: 152 DINEAGSNAHAGTGEIFVAEADESDGGFLLLAPSGAIVTNVEADHLDYYQRPEDVEAAFA 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-----GIKTIYSFGKSKNADFQLRKWKQC 266
              +G++  G +    DD    LL A              + ++G+S +A  ++      
Sbjct: 212 RFVDGVDPNGFVVACADDPGAALLVAALRERERDGGKAPRVTTYGESVDAHVRVELPMVS 271

Query: 267 SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +  S  EV ++G+ + E+     G H   N    L     L       ++ L+ F    G
Sbjct: 272 AAGSTCEVVVRGRRLGELSLRVPGRHNLHNAAGALAAGLELGLPAAGLLEGLAGF---AG 328

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +R+      G   +ID+ Y  +P  + + +     I   G      V+     +   +
Sbjct: 329 ARRRFETKGTAGGIRVIDD-YANHPTKVVSVLRAARDIVDGGN----VVVAFQPHLYSRT 383

Query: 386 QSFH---------IDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFL 435
            +F           D   V+ ++      + G    ++   +P  +  V Y  +      
Sbjct: 384 AAFAAEFGAALGLADAVVVMDVFGAGEQQIPGVSGASVAAQVPLPAGRVVYEPSWSAAAD 443

Query: 436 FIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEEFP 469
            + +    GD+V+   +         L+ +L E  P
Sbjct: 444 QVAAFTRPGDLVLTVGAGDVTLLGGELLRVLAERAP 479


>gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus
           flavithermus WK1]
 gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus
           flavithermus WK1]
          Length = 447

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 123/355 (34%), Gaps = 45/355 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITGS GKTTT  ++   L   K+     G+      V   +A+     D
Sbjct: 103 AYETSEAPIIGITGSNGKTTTTTLIYHMLQEAKRRPLIAGNIGT---VACEVAKHATKDD 159

Query: 162 FGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             + EL    L G IRF     RPHIAV+  I  AHL      E  A AK  IF+   +T
Sbjct: 160 IIVMELSSFQLLGTIRF-----RPHIAVLLNIFDAHLDYHGTKEAYAEAKGNIFKNQTET 214

Query: 221 GTIFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
               +N DD     L  KS A      +KT  S+G    A  +        E+      +
Sbjct: 215 DYAVVNADDPIVMQLAKKSRARHVPFSVKTPLSYG----ATVKEGAIYFHDERIIDTTDV 270

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H  +N+L  +    +  AD +   + L+ F        R +     
Sbjct: 271 A---------LRGTHNLENILAAVAAAKLAGADNEAIRRVLTTFTGVP---HRLQFVAEI 318

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N  + + A+S   +         + +L    + G              
Sbjct: 319 NGRKFYNDSKATNILATQKALSAFHE--------PVILLAGGLDRGNEFDELLPYF---- 366

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  V   G     ++     +    V   + ++            GD++++
Sbjct: 367 --KHVKAVITFGQTAPKIERVAREAGIQQVKRVDNVEQAAFAAYEWSSPGDIILL 419


>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
 gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
          Length = 471

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 128/358 (35%), Gaps = 35/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++  A  L      IA+TG+ GKTTT  ++   +SS  K    +G+  N     L   
Sbjct: 113 IGEIEFAYNLLPNRNYIAVTGTDGKTTTVTLIYKIISS-YKKARLVGNVGNTFSKELETI 171

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D+   + EL    L            HIA I  IA  HL  +  IEE  +AK  I 
Sbjct: 172 EPDEDI---VLELSSFQL----ETVEKFHAHIAAILNIAEDHLDRYKDIEEYFNAKKNIS 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
               K   + LNYD+ +  +   + +      + +F  KSK AD    +  +        
Sbjct: 225 INQNKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKSKFADIYYNEEDEY------- 277

Query: 274 VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  + + +  +     +G H   N+L  + +        +     ++ F   +G   R  
Sbjct: 278 IYYENEKLFSIKERKILGKHNVANILAAVLVCLKDNIPAEHIEHVVNNF---KGIEHRVE 334

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     I++S      SM A +S L           I ++G   +  + +      
Sbjct: 335 LVAEINGVKYINDSKA---TSMNAVMSALKSFDKDI----ILIMGGRNKNIDFTS----- 382

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L    +  + L G    AL D +     +   +     F +  +  ++GD V++
Sbjct: 383 -LNNLIESRVKKLILIGEAAEALDDMIHFENKII-IKDFTDAFNYASAISINGDTVLL 438


>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
 gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
          Length = 452

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 153/430 (35%), Gaps = 58/430 (13%)

Query: 33  DSRSIAPQ-----------EAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           D+R++ P              +  A+    +DG D     +  G   V ++   + +   
Sbjct: 37  DTRAVPPGLDVLKAELPNVVVYVGALTPTVFDGVDLA--VISPG---VPLSEPEIQAAIQ 91

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             IPV G  DV     +L    R  S A +IAITG+ GKTT   ++     S        
Sbjct: 92  RGIPVVG--DV-----ELFAQYRPTS-AKLIAITGANGKTTVTTLVGEMCKSAGLKTIVA 143

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+    +    TL+    DV   + EL    L      T+ +    A +  ++  H+  +
Sbjct: 144 GNIGLPVLD--TLSMETPDV--YVLELSSFQL----ETTNSLLADAATMLNLSEDHMDRY 195

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             ++  A AKA IF   +      LN DD++  ++     A       +FG       Q 
Sbjct: 196 DSMQSYAVAKAHIFYHAKLQ---VLNRDDAWSLMMARAKLAQ-----VTFGLDDVVAEQD 247

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              KQ + ++W+                G H A N L  + +   +  D    I+ L  F
Sbjct: 248 YGIKQVNGETWLSCGTHDLMNIRDLKIAGLHNASNALAAMALCRGIGLDFAPIIQTLYNF 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R     N       D+S   N  +  AA+S LSQ       + + + G   +
Sbjct: 308 ---KGLPHRVEWVANIDDVDYYDDSKGTNVGATCAALSGLSQ-------KVVLIAGGEGK 357

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQS 439
             + S        +     N   V L G     +  + L  ++ ++++  +       Q 
Sbjct: 358 GQDFSP------LKEAVSTNARAVVLIGRDAPLIEAELLSTNVPMYHAADLPEAVTIAQK 411

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 412 LAQTGDAVLL 421


>gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
 gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
          Length = 484

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 139/403 (34%), Gaps = 53/403 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D         I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFKK-EYLDSAITAGLSFYVSEIDY-----GADI 85

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++   ++     ++K  ++A TG+ GKTT        L  +    A + 
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHML-KVNHRPAMLS 144

Query: 142 SYNNHIGV------------PLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           + N  +               L L RM     +       + +S    +    + +   +
Sbjct: 145 TMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLIMEVSSQAYLTKRVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + E    +  + +N     F ++K +   +  
Sbjct: 205 GVFLNISPDHIGPIEHPTFEDYFFHKRLLMEN---SNAVVVNSQMDHFNIVKEQVEYIPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                + ++             +E       ++GK         IG    +N +      
Sbjct: 262 DFYGDYSEN-----------VITESKAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLAC 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++     ++        G+        G    +D  Y  N  S+K  ++V+ + 
Sbjct: 311 LRLGVSIEDIKNGIAQ---TTVPGRMEVLTQTNGAKIFVD--YAHNGDSLKKLLAVVEE- 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             H +G  I VLG     G   QS   D  +V++ +    V L
Sbjct: 365 --HQKGDIILVLGAP---GNKGQSRRKDFGDVINQHPNLQVIL 402


>gi|329725481|gb|EGG61961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU144]
          Length = 437

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 132/374 (35%), Gaps = 54/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T +A+TG+ GKT+T  +L+  ++  KKT   IG                   D+  FE
Sbjct: 100 QYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDG---------TGMGLPGSDYFAFE 150

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   F  I+++  A   +   ++K   I   
Sbjct: 151 A-----CEYRRHFLSYHPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKKG--IIAW 203

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
            DD +   L           +Y +G  +  +   +  +   + +  +V ++G+  +    
Sbjct: 204 GDDEYLRKLDVDI------PVYYYGFKETDEIYAKNIQITEKGTQFDVYIKGEFYDQFLS 257

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I  +   +V+   +AL  F   + R    + +       ++ + 
Sbjct: 258 PQYGNHNILNALSVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ-----VLVDD 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P  +   +AV          +Q+F  + AE LS      V+
Sbjct: 313 YAHHPREISATIETARKKYPKKD--VVAVF--QPHTFSRTQAFLNEFAESLSK--ADQVF 366

Query: 406 LSGFHVLALKDALPRSIHVHYSETM-----------DGLFLFIQSSLVDGDVVVVKSSNS 454
           L       +  ++  +      E +           +     ++    D  V++   +  
Sbjct: 367 LC-----EIFGSIRENTGDLTIEDLINRIDGSTLIDENSIDVLEK--FDNAVILFMGAGD 419

Query: 455 CGFYRLINLLLEEF 468
               +L+    E+ 
Sbjct: 420 IQ--KLLKAYFEKL 431


>gi|325954316|ref|YP_004237976.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436934|gb|ADX67398.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
          Length = 446

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 135/389 (34%), Gaps = 50/389 (12%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHI 147
            +    L +  V   +      I + G+ GKTTT  +L   L  +  K+ A +G    + 
Sbjct: 92  ANSFTVLKRSQVLGEITKHTYSIGVAGTHGKTTTSSILGHVLKFAEVKSTAFLGGVAENY 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
              + L            E+ ++   E       + P +A+IT+I   HL  +   +E+ 
Sbjct: 152 HSSIILNGG---------EVTVAEADEFDRSFLRLSPKLAIITSIDADHLDIYGERKEVE 202

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            +    F  L +                      L      ++G  + AD+  +  +   
Sbjct: 203 KSF-HEFGQLVEEKLFV--------------RKGLNFSNSLTYGVEEEADYVAKNVRIED 247

Query: 268 EQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +VQ   K +  V     G H  +N L  L +   +  D    I+AL+ F   + R
Sbjct: 248 GHYVFDVQTPTKEIHNVGILLPGRHNMENALAALAVADYMGIDEKKIIEALAEFKGVKRR 307

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+          +  + Y  +P  +KA I  + ++ P    + + V      +   ++
Sbjct: 308 FNRFEYTDK-----IYIDDYAHHPNELKAVIESVRELYP--TKKLLLVF--QPHLYTRTR 358

Query: 387 SFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            F  + AE         +L +Y    + + G     L   +          +++G    +
Sbjct: 359 DFVNEFAESLSAVDELVLLDIYPARELPIEGVTSEWLLSKITLDQKKVC--SLEGAMDLL 416

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++     D+++   + +     L+N + E
Sbjct: 417 KT--KKFDILLTAGAGNI--DTLVNPIKE 441


>gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 338

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 118/343 (34%), Gaps = 29/343 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      AS G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            +  +   L+ L             ++A+TG+ GKTTT ++L      + +T A +G+  
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N +   +            +                + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++      G   +N DD       A        ++   
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIVNADDEVGRRWLASLPDAVAVSMEGH 240

Query: 251 GKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             + N      +    +       +         E+    +G     N+L+ L  +  L 
Sbjct: 241 -INPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLALG 299

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             +   +K  +   P  G   R       G  T++ + Y   P
Sbjct: 300 YPLTDLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTP 338


>gi|15615130|ref|NP_243433.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           halodurans C-125]
 gi|30316130|sp|Q9K9S8|MURD_BACHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|10175187|dbj|BAB06286.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus halodurans
           C-125]
          Length = 450

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 122/343 (35%), Gaps = 37/343 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+AITGS GKTTT  ++   L    +     G+      V   +AR     D  + E+  
Sbjct: 113 IVAITGSNGKTTTTSLVVEMLKGSAREPKVAGNIGV---VASDVAREATADDVIVMEVSS 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T   RP +A++  I  AHL      E   +AK +I E +++      N DD
Sbjct: 170 FQLMG----TSHFRPKVAILLNIFDAHLDYHGSKENYVAAKKKIVENMKEEDYFVYNADD 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                + A++ A  I    S      A      +    E    ++  +G  +       G
Sbjct: 226 PLVSKVAAETKATPIPFSRSTVVKSGAYVDGETYMFRGE----KIVEKGDVV-----LPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N+L  +    ++ A  +     LS F   E R +    A  +      ++S   N
Sbjct: 277 DHNVDNVLAAMSAALLMGATKEQIHHVLSTFSGVEHRLQFVGTAFERK---WYNDSKATN 333

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             S  AAI   +          I +L    + G            + +L  +  V L G 
Sbjct: 334 ILSTTAAIQSFTD--------PIVLLAGGLDRGNSFDDL------IPALQKVKAVVLFGE 379

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV 449
               L  A   +      E  + +   ++ +L    +GDV+++
Sbjct: 380 TKHKLAQAAMEAGVETIVE-AERVEDAVRKALDVSANGDVILL 421


>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
 gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
          Length = 450

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 129/351 (36%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VSYVDATDIADATRKAYELATQGDVVLL 421


>gi|312148369|gb|ADQ31028.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi JD1]
          Length = 468

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 147/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + M    +  I E       E +       P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAMAGISNIFIVE-----TCEYKNHFLNFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLKYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella
           cibaria KACC 11862]
          Length = 508

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 174/482 (36%), Gaps = 75/482 (15%)

Query: 6   TFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T   + + +    + I     +G +  ++ +S  +AP+   F IKG  +   +++  A+ 
Sbjct: 4   TAQQITEILADQDLLISTPEFKGELKHLAYNSNDVAPETLLF-IKG-RFKA-EYLTDAIA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKT 120
           KG   +V  T          +P + VDDV  A++   +A     ++K  +I ITG+ GKT
Sbjct: 61  KGVKAIVAPTSFTH---DTDLPTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITGTKGKT 117

Query: 121 TTKEMLTIALS-SIKKTYACIGSY--------------NNHIGVPLTLARMPVDV----- 160
           +   M    L  +     A   +               +      L L R   +      
Sbjct: 118 SATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDLFRWMAEAVANGM 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLE 218
              + E+  S   ++    + +R ++ V   I+P H+        E+    K  +F+  E
Sbjct: 178 THMVMEVS-SQAYKMER-VYGLRFNVGVFLNISPDHVGENEHPTFEDYLEHKMMLFDHSE 235

Query: 219 KTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWME 273
           +   I LN D D F EL++    A+    I+ +G+    S  AD      +   + S   
Sbjct: 236 Q---IILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDTVEADLQGSTFA 292

Query: 274 VQLQGKSM-------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           V+  G+         +      G     N +  +    ++ AD D   + L V       
Sbjct: 293 VREAGQQAARLGIAGDYHLDMPGDFNQGNAVAAMIATRLVGADTDAMHEGLEVVKIPG-- 350

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +    Q   T+  + Y  N AS+ A ++ +   +     +   V+G     G    
Sbjct: 351 --RMQVLTTQNHGTIYVD-YAHNYASIAALLNFVR--TNETVEKLTIVVGAP---GNKGV 402

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           S    + + +S      V+L+                    E  + +   IQ+++ +  V
Sbjct: 403 SRRPGIGQAVSE-GADVVYLTSDDPQ--------------FEDPNAIADEIQAAITNDHV 447

Query: 447 VV 448
           V+
Sbjct: 448 VI 449


>gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           MurE [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 481

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 157/459 (34%), Gaps = 69/459 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FFA KG  +   DF+  A+ KG  + V   D       + IPV 
Sbjct: 35  FDSLSYDSRQADEQTLFFA-KGATFKA-DFLKQAIAKGLKIYVSEIDY-----QVGIPVI 87

Query: 87  GVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+++  A  L  +A     + K  ++A TG+ GKTT        L    K  A + + N
Sbjct: 88  LVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGKTTAAYFAYHMLKESHK-PALLSTMN 146

Query: 145 NHIGV------------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +               L L  M            + E+        R   + +   + 
Sbjct: 147 TTLDGKSFFKSQLTTPESLDLFAMMAQCVANGMTHLVMEVSSQAYLVGR--VYGLIFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + E    +  + +N     F +L  +       
Sbjct: 205 VFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVVVNSGMEHFNILAEQVA----- 256

Query: 246 TIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                   K  DF  +    +  ++     Q  GK + +     IG    +N +      
Sbjct: 257 -------DKPHDFYGKGACNRLLQRQAFSFQAAGKLAGDYAIQLIGSFNQENAMAAGLAC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A ++     ++      GR +             I   Y  N  S++  +SV+ + 
Sbjct: 310 LRLGASLEDIRLGIAK-TRVPGRMEVLTMTNQAK----IVVDYAHNGDSLEKLLSVVEE- 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
             H +G+   +LG     GE  ++   D  +V++ +    + L+           + + +
Sbjct: 364 --HQKGQIYLILGAPGNKGESRRA---DFGQVINQHPNVRIILTADDPNFEDPQLISEEI 418

Query: 419 PRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
              IH       +  + +   ++    + D +++  K +
Sbjct: 419 ASYIHREVDIIIDRKEAIKAGMERCQNEQDALIIAGKGA 457


>gi|167773014|ref|ZP_02445067.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
 gi|167664947|gb|EDS09077.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
          Length = 453

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 135/408 (33%), Gaps = 55/408 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA L+V    ++     L        P     ++LG L  L            I + G+
Sbjct: 68  AGADLIVYTAAIMDDNPELRAAFASKTPTVERAELLGFLTGLYE--------DCICVCGT 119

Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  MLT  L        A IG     IG                  L +    E 
Sbjct: 120 HGKTTTTAMLTQMLLGAGLDPTAVIGGKLPAIGGNGRAGESS---------LMVCEACEF 170

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     + P ++VI  +   HL  F  IE I  +  +  +   +  TI +N  D      
Sbjct: 171 KDHFLQLHPDLSVILNVDADHLEYFGTIENIIKSFHKFADMTTR--TIIVNGSDPNSMR- 227

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294
                 +  K I +FG  ++ D+     ++   Q+  ++   G+++     H  G H   
Sbjct: 228 --AVEGINGKEIITFGWDEHFDYYPANIRRKGAQAEFDLCCGGRALTHLTLHVPGLHNIL 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N              V    + L+ F    G G+R+         T+ D+ Y  +PA + 
Sbjct: 286 NATAACAAAIKSGVPVTALGEHLAQF---RGAGRRFEILGEVHGVTIADD-YAHHPAEIA 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------- 405
             +    ++      R  AV          ++    D A+ LSL     V          
Sbjct: 342 VTLRAAREMD---FRRVWAVFQPF--TYSRTKLLMDDFAKALSL--ADRVVMSEIMGSRE 394

Query: 406 --LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               G +   L + +P S+   +    + +  ++      GD+V+   
Sbjct: 395 KNTEGVYTSQLAEKIPGSV---WFAGFEEIADYVMKHAESGDLVITLG 439


>gi|291557260|emb|CBL34377.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum
           V10Sc8a]
          Length = 461

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 135/372 (36%), Gaps = 34/372 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             + ++G+ GKTTT  MLT              + +    +   L  +      G  ++ 
Sbjct: 110 KAVCVSGTHGKTTTSSMLTHM--------YLAQNVDLSTVIGGKLKAIGGSGRAGSSDVM 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +    E       + P+I++I  I   HL  F  ++ + ++  +  +    T  + +N D
Sbjct: 162 VCEACEFSNTFLHLFPNISIILNIDADHLDFFKTMDNLRASFTKFCDN--TTDILVVNGD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV-HH 286
           D     ++A   +   K I +FGK+    +     K+ S+ Q+  ++   G  +E +  H
Sbjct: 220 DEN--TMRAVKASGFDKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIERISIH 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N +             +   K LS F    G G+R+      G  T++D+ Y
Sbjct: 278 VPGAHNVLNAVAACAAALATGVTPENINKGLSTFW---GAGRRFERLATIGGITVVDD-Y 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +PA + A +     +      R  AV          + +   D A  L +     V L
Sbjct: 334 AHHPAEVAATLKTAKAMQDFK--RVWAV--HQPFTYSRTYTLMDDFASALEI--ADKVVL 387

Query: 407 S---GFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
           +   G            D   +     +  T + +  ++  +   GD+++          
Sbjct: 388 TEIMGSREKNTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESGDMIITLGCGDVYKV 447

Query: 457 FYRLINLLLEEF 468
            +R+  +L E++
Sbjct: 448 AFRIEEILREKY 459


>gi|300361173|ref|ZP_07057350.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           JV-V03]
 gi|300353792|gb|EFJ69663.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           JV-V03]
          Length = 437

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 117/356 (32%), Gaps = 46/356 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVADSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++   A     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTRAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G +   DFQ    ++ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFNDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       ++   + L  F   +    R     + G  ++ID+ Y 
Sbjct: 266 FGDHSILNTTAVIAVAYTEKVPMEDIKEGLLTFKGAK----RRFAEKDFGDVSVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WL 406
            +P  M+A I    Q  P  E   + V          ++ +  D  E+L   + ++V  +
Sbjct: 321 HHPTEMRATIQAARQKFPDKE--LVVVF--QPHTFSRTKKYQKDFEEILRDVDKAYVTPI 376

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 A  D              V   + +  L            VVV   +   
Sbjct: 377 YASAREASGDISSEDLVKNIPGSEVIDLDNIADLTKH------KNAVVVFMGAGDI 426


>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
 gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
          Length = 439

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 116/351 (33%), Gaps = 34/351 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                +  IIA+TG+ GK+T   ++   L     +    G+          L  + +   
Sbjct: 93  FYQEYEGAIIAVTGTNGKSTVTALIAHILQQSGISAVAAGNIGLP-----ALDTLALGCQ 147

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+      RP IAV+  +   HL+ +   E    AK  IF       
Sbjct: 148 VTVLELSSFQLETIQTF----RPDIAVLLNVTEDHLNRYDTFEHYVDAKERIFLNQTAED 203

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN+DD     L + +H    +  +S    +  D  L    Q         ++ G+ +
Sbjct: 204 WCVLNHDDPVIRTLTSDNHIPARRVFFSSRSRQMVDNFLNCTVQGVRG-----KVNGQLL 258

Query: 282 E---VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           E         G H  +N+   L  V +     +     L  F P      R         
Sbjct: 259 EAPADRLCLEGLHNMENVAAALAAVRLYGLSPEQIGTGLEGFAPLP---HRMTLVREIVG 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              ID+S   N  ++  ++         G+   I + G   + G+ +Q            
Sbjct: 316 VRYIDDSKATNIGAVLKSLE--------GQKNIILIAGGRNKGGDFAQ------LAGAVK 361

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   +   G     +  AL +S+ V  ++ M           V GD V++
Sbjct: 362 ASCKLILAIGEARHQIAGALGKSVSVLLADDMADAVSQAWKQAVSGDTVLL 412


>gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
 gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 108/302 (35%), Gaps = 21/302 (6%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +V     E     + + R     V    A  T +   HL     ++E  +AK  +FE L
Sbjct: 40  KEVTHLALEASSHGIDQRRL--DGVAIKAAGFTNLTQDHLDYHGTMDEYRAAKMRLFEAL 97

Query: 218 EKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              G T  LN D   +    + S   G+  +   G+    D  L   +   E   + + +
Sbjct: 98  LPRGRTAVLNADSDAYSAFASASIMAGLG-VMGVGERGR-DLTLLARRATPEGQRLTLDV 155

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +G+  +V+    G   A N L+  G+      D D  I AL +    +GR +R       
Sbjct: 156 RGRLHDVLLPLAGAFQASNALVAAGLCIAGGEDPDRVIPALELIQGAQGRLQRIPGGARG 215

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   +    Y   P  ++  ++ L    PH  GR I V G     G+  ++    + E+ 
Sbjct: 216 GEVYV---DYAHTPDGLETVLNALR---PHATGRLIVVFGA---GGDRDRAKRPLMGEIA 266

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVVV-- 449
                + +            A+   +     ++++            S + +GDVVV+  
Sbjct: 267 GRLADTAIVTDDNPRSEDPAAIRAQVRAGCPDSLEIGDRREAIRHAVSLMREGDVVVIAG 326

Query: 450 KS 451
           K 
Sbjct: 327 KG 328


>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 457

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 127/359 (35%), Gaps = 35/359 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+     A   + A IIAITGS GKTTT  ++   L +        G+        +   
Sbjct: 98  LSSEIEFASEFTNAKIIAITGSNGKTTTTSLIYHILKNDGLKVGLGGNIGKSFAKQV--- 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 D+ + E+    L +I+      RPHI+++  ++  HL  ++   EE A AK  I
Sbjct: 155 -ADESFDYYVLEVSSFQLDDIQNF----RPHISLLLNLSQDHLDQYNYNYEEYALAKFRI 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E  E       N DD   + L  K        +  F   +       K         M 
Sbjct: 210 AENQENDNFFIYNKDDEMSQNLLEKLEVKA--KMIPFSLKEK-----LKEGGFFTGDKMV 262

Query: 274 VQLQGK-SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           V+LQ + SM++     +G H   N L       IL    ++   +L  F   +    R  
Sbjct: 263 VKLQDEFSMDIAELALVGNHNVANSLAASIAGKILKISNESIRNSLMTFQAVQ---HRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G    I++S   N  +   A+  + Q +         ++G + +  + ++     
Sbjct: 320 QVAETGGVRFINDSKATNVNATYYALESMKQPTVW-------IVGGIDKGNDYTE----- 367

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV 449
             E L    +  +   G     + D       + YS  +M       +S    GD V++
Sbjct: 368 -IEDLVKRKVKAIVCLGLDNQKIVDFFKSKKDLIYSTSSMAEAVNISKSLAAKGDAVLL 425


>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O395]
 gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
 gi|172047587|sp|A5F5N1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
 gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
          Length = 440

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 132/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 107 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 215 ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVTNVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|260103187|ref|ZP_05753424.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|260083012|gb|EEW67132.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|328464729|gb|EGF36059.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           MTCC 5463]
          Length = 437

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 127/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +      F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVEGSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F    +  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + +  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNATAVIAVAYTEKVPMDDIREGMLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|297571254|ref|YP_003697028.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931601|gb|ADH92409.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 450

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 142/419 (33%), Gaps = 40/419 (9%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             + GHD    A    A  +VV +  +  +         ++      ++    A    + 
Sbjct: 47  ETFVGHD----ARHVPADAIVVRSSAIKPVNPEYA--VAIERGQDIWHRSQALAFAAGER 100

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             IA+ G+ GKT+T  M+++AL ++       IG +         L         G   +
Sbjct: 101 DFIAVAGAHGKTSTSGMISVALDTLDADPSRAIGGHLAGGLPGGYL-------GSGSMLV 153

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             +   +  FL +  RP IA++T + P HL ++   E    A  +    +   G +    
Sbjct: 154 AEADESDGSFLNY--RPRIALVTNVEPDHLDHYGSAEAFDQAFVDFAGKIVPGGLLVCCT 211

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           DD     L   +   G++ I ++G          +      +      V+   +   +  
Sbjct: 212 DDPGAARLAEAAQVHGVR-IATYGMKPMPGDHTMISGVVSGANGVEAHVRRGDQEAHIRL 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HM  N +    +   L  D   +  AL+ F    G G+R+          +ID+ 
Sbjct: 271 SVHGTHMLMNAVGAWIVCCDLGFDAAESASALASFT---GTGRRFELRGEVNGVRVIDD- 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------- 398
           Y  +P  ++A +     ++    GR   V      +   ++ F    A+ L         
Sbjct: 327 YAHHPTEVEATLRTARSVTT---GRVKVVF--QPHLYSRTRHFARAFADALDTADDIIVT 381

Query: 399 --YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             Y    V   G    A+   +  S    Y   M      I +    GD+++   + S 
Sbjct: 382 SVYAAREVPNDGVEGDAI---VAHSHKARYIPDMIDAACAIAADSNPGDLIMTMGAGSI 437


>gi|227833490|ref|YP_002835197.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184478|ref|ZP_06043899.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254765993|sp|C3PHF5|MURC_CORA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227454506|gb|ACP33259.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 496

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 138/412 (33%), Gaps = 48/412 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV    D+L  L +             + + G+ GKT+T  M
Sbjct: 82  AAIPQDNPELTAAREAGIPVIRRSDLLAELMEGHRQ---------VLLAGTHGKTSTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              AL             +    +   L R   +   G  +  ++   E         P+
Sbjct: 133 AVSALQQAG--------LDPSFAIGGQLNRAGTNAHGGTGDAFVAEADESDASLLRYSPY 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT I P HL  F   E       +  + + + G + +  +D+       ++   GI+
Sbjct: 185 VAVITNIEPDHLDYFGTAESYYQVFDDFADRVVEGGYLVVCLEDAQAATTGERAAQRGIQ 244

Query: 246 TIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQ--LQG---KSMEVVHHGIGYHM 292
            +  +G     D         ++ +    +  + + V+  L G   + +    H  G+HM
Sbjct: 245 -VLGYGAGSAVDEDSAVPLAAEILEETVSAAGAHIRVRLALPGQAPQELSYDLHVPGHHM 303

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    L   ++   D       L+ F    G  +R+    ++    + D+ Y  +P  
Sbjct: 304 VLNSAAALLAGALAGGDPAELAAGLTDFT---GVRRRFEYRGSERGIRVFDD-YAHHPTE 359

Query: 353 MKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNI 401
           + A ++       +     R IA       +   +  F  + A+         VL +Y  
Sbjct: 360 VSAVLNAARAKADAEGEGARVIACF--QPHLYSRTMKFDAEFAQALALADAAVVLDIYGA 417

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
               + G     + D +P  + V +          + S    GD+V+   + 
Sbjct: 418 REQPVEGITSRIITDKMPEDMPVIFEPDFSEAAGDVISLAQSGDIVLTIGAG 469


>gi|161507884|ref|YP_001577848.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           DPC 4571]
 gi|172048345|sp|A8YWG1|MURC_LACH4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160348873|gb|ABX27547.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DPC
           4571]
          Length = 437

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 127/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I+G+ GKT+T  +L+  L  +  T   IG             +      F ++E  
Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVEGSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F    +  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    K+ +  S   V   GK + E   H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + +  F   +    R     + G   +ID+ Y 
Sbjct: 266 FGDHSILNATAVIAVAYTEKVPMDDIREGMLTFKGAK----RRFSEKDFGDIAVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  M+A I    Q     + + + V          ++ +  D  E+L   ++   +++
Sbjct: 321 HHPTEMRATIQAARQ--KFPDKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVT 374

Query: 408 GFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC----- 455
             +  A +       + L ++I       +D +    ++      V+V   +        
Sbjct: 375 PIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKN---KNSVIVFMGAGDIPKYED 431

Query: 456 GFYRLI 461
            F +L+
Sbjct: 432 AFEKLL 437


>gi|83312948|ref|YP_423212.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|109892710|sp|Q2W0H2|MURC_MAGMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|82947789|dbj|BAE52653.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 143/401 (35%), Gaps = 47/401 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-- 130
             V +  +  +PV    ++L  L +L  A         IAI G+ GKTTT  ++   L  
Sbjct: 82  PEVQAARAKLVPVVRRAEMLAELMRLKSA---------IAIGGTHGKTTTTSLIAALLDT 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + +  T    G  N +     T AR+    ++ + E   S    I+     +     V+T
Sbjct: 133 ARLDPTVINGGIINAY----GTNARLGAS-EWMVVEADESDGSFIK-----LPSTAVVVT 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P H+ ++  +E +  A     E +   G   +  D    + L A+   +  + + ++
Sbjct: 183 NIDPEHMDHYGTVERLHEAFRTFVENIPFYGFAAMCIDHPEVQALVAR---VPDRKLVTY 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIV 303
           G +  A  ++ K       +  +V +  +         ++     G H   N L  + + 
Sbjct: 240 GFNHQALVRVEKLSMDITGARYDVVITDRVTGATRTIADIHLPMYGEHNVLNSLAAIAVA 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L    D    AL  F   +   +R+         T+ID+ Y  +P  + A +      
Sbjct: 300 NELGLPNDVVKTALGGFKGVK---RRFTRTGEAKGVTVIDD-YGHHPVEIAAVLKAARSA 355

Query: 364 SPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKD 416
               +G  IAV+       +  L   F       D+  V  +Y      + GF   AL  
Sbjct: 356 ---CQGNVIAVVQPHRYSRLSSLFAEFCTCFNDADMVIVADVYAAGEKPMEGFDKAALVK 412

Query: 417 ALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
            L    H       D   L   + S    GD+VV   + + 
Sbjct: 413 GLQEHGHRRVMALADSKALAPLVNSLAGPGDMVVCLGAGNI 453


>gi|237736132|ref|ZP_04566613.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
 gi|229421685|gb|EEO36732.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
          Length = 458

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 134/373 (35%), Gaps = 43/373 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M    +  +  T   +G     IG        P   ++ I E   S
Sbjct: 113 IAVAGTHGKTTTSSMAASVMLPLDPTI-VVGGILPEIGSNAK----PGKSNYFIAEADES 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +      + P  ++IT I   HL N   +E I  + ++  +   K   +F+  D  
Sbjct: 168 DNSFL-----YMNPTYSIITNIEADHLENHGSLENIIKSFSKFIDQTSKE--VFICSDCE 220

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               L A       K I  +  K K AD      +    ++  +V ++G+ +     +  
Sbjct: 221 ILRGLAAIKEN---KKITRYSIKDKTADIYAENIEVGEGKTSYDVVIKGEKIGRFTLYIP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +      +     +A   F    G  +RY    +     +ID+ Y  
Sbjct: 278 GEHNILNSLPVIYLALEFGLEEKDIERAFEKF---RGSKRRYEVLYSGNGIRIIDD-YAH 333

Query: 349 NPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +P  +KA +   +            PH   R   +L +     E +         +L +Y
Sbjct: 334 HPTEIKATLQGATSIEDSKITVIFQPHRYSRVKFLLENFKNAFEKADE-----VVLLPIY 388

Query: 400 NISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
           +     + G  +  L++ +  P+++     + +D + +  + +     V +   +     
Sbjct: 389 SAGEKDIFGVTIEDLQNVIENPKAVIEKNPQNIDDMIMNFEGNR----VFMFMGAGDISK 444

Query: 457 -FYRLINLLLEEF 468
             +R+   L  ++
Sbjct: 445 IAHRVAEKLEGKY 457


>gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 516

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 153/477 (32%), Gaps = 65/477 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  +  +S DSR +     FF  KG  +    ++  A + GA   V         G  ++
Sbjct: 28  QTIMEAVSYDSRDVQNNSLFFC-KGAGF-RPTYLTMAKENGAIAYVAEQPYPEGTGMHAL 85

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----------TIALSS 132
            V  V   + AL   A  +  +    ++  TG+ GKTT+   L           T  LSS
Sbjct: 86  IVRNVSKAM-ALLSAAFYSFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSS 144

Query: 133 IKKTY--ACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +      A   ++ + +  P +L      R  VD       + +S     +     +   
Sbjct: 145 VDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKSRVFGLTYD 204

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHAL 242
           +     I+P H+        E+    K ++   L  +    +N + D F ++  A +   
Sbjct: 205 LGFFLNISPDHIGVNEHPNFEDYLHCKLQL---LVNSRKCIINAETDRFADVYAAATTTT 261

Query: 243 GIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHG 287
              +IY F +         K  DF+ +  +    ++   +            S E     
Sbjct: 262 NPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQM 321

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N    +    +     +   K           G+       +    ++D  Y 
Sbjct: 322 IGDFNETNATGAIIGAGLAGMSYEDCAKG---IRHVTIPGRMETVTTQKHGLIVVD--YA 376

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
            N ASM A +  +         R I V+G     G+   S     +E L        +L 
Sbjct: 377 HNKASMLALMRFMR--REFTTPRVIVVVGAP---GDKGISRRPGFSESL-TAEADKAYLT 430

Query: 407 ---SGFH-VLALKDALPRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVV--KSS 452
               GF     + + +   I     ET+     +       S     DVV++  K +
Sbjct: 431 TDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPDDVVLLCGKGA 487


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 157/437 (35%), Gaps = 59/437 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIP-----------VFGVDDVLGALNKLAVAARLR 105
           +   V KGA  +  +           +            +  V   L  L++  + A L 
Sbjct: 42  VDKLVAKGARYLQGHKKNHIPEDCTIVYGSGIAKDNVEYIEAVRKQLPMLHRSELLAFLM 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            + T I ++GS GKTT   ++T    + KK     IG  N      L+L       ++ I
Sbjct: 102 QEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYAIGGLN-----SLSLNGYSGSSEYFI 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E   S      +L     P +AV+T +   HLSNF    E++AS   E    +E     
Sbjct: 157 AEADESDGSLKHYL-----PKVAVVTNLDNEHLSNFEGSKEKLASTIEEFTRKVENPRLC 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
           F N D    + LK +          S+G S++   ++  + Q   +S   +   GK   +
Sbjct: 212 FYNGD---CQELKGRISGT------SYGFSQDCHLRIYSYSQNGWRSLFSLSFLGKDYLD 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + IG H   N  + +GI   L  D ++  +AL  F   + R +R   +       L 
Sbjct: 263 IDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFAGIQRRMERKNISEK----FLF 318

Query: 343 DESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            E Y  +P+ +   +  L              PH   R    L D  +  + +       
Sbjct: 319 FEDYAHHPSEISCTLRGLRDAVGLRRIVAICQPHRFSRLQYCLEDFYKAFQDADE----- 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             +  +Y+     L       L +  +L   +   Y    D +  ++Q  +   D+ +  
Sbjct: 374 VILTDVYSAGETALDLPSPEKLAETISLASHVRCRYLP-YDDILPYLQQEIRVHDICI-- 430

Query: 451 SSNSCG-FYRLINLLLE 466
            S   G  Y + N L +
Sbjct: 431 -SLGAGNIYAVGNALKD 446


>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 450

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 125/351 (35%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      E   +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQNNMAAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELATKTQA----TVVPFSTKEKVDGAYLENGQLYFRG---EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D     + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQIIKETLSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y +   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAAEKAG-VTYVDATDIADATRKAYELATQGDVVLL 421


>gi|46201829|ref|ZP_00208265.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 476

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 47/401 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-- 130
             V +  +  +PV    ++L  L +L  A         IAI G+ GKTTT  ++   L  
Sbjct: 82  PEVQAARAKLVPVVRRAEMLAELMRLKSA---------IAIGGTHGKTTTTSLIAALLDT 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + +  T    G  N +     T AR+    ++ + E   S    I+     +     V+T
Sbjct: 133 ARLDPTVINGGIINAY----GTNARLGAS-EWMVVEADESDGSFIK-----LPSTAVVVT 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P H+ ++  +E++  A     E +   G   +  D    + L A+   +  + + ++
Sbjct: 183 NIDPEHMDHYGTVEKLHEAFRTFVENIPFYGFAAMCIDHPEVQALVAR---VPDRKLVTY 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLMTLGIV 303
           G +  A  ++       + +  +V +  +          +     G H   N L  + + 
Sbjct: 240 GFNHQALVRVENLTMDIKGASYDVVITDRVTGATRTISGIHLPMYGEHNVLNSLAAIAVA 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L    D   KAL  F   +   +R+         T+ID+ Y  +P  + A +      
Sbjct: 300 NELGLPNDVVKKALGGFKGVK---RRFTRTGEAKGVTVIDD-YGHHPVEIAAVLKAARSA 355

Query: 364 SPHGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKD 416
               +G  IAV+       +  L   F       D+  V  +Y      + GF   AL  
Sbjct: 356 ---CQGNVIAVVQPHRYSRLSSLFAEFCTCFNDADMVIVADVYAAGEKPMEGFDKTALVK 412

Query: 417 ALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
            L    H       +   L   + S    GD+VV   + + 
Sbjct: 413 GLQEHGHRRVMALAEPQALAPLVNSLAGPGDMVVCLGAGNI 453


>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
          Length = 450

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 126/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELATKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG---EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIQGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  +  +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|167747842|ref|ZP_02419969.1| hypothetical protein ANACAC_02571 [Anaerostipes caccae DSM 14662]
 gi|167652737|gb|EDR96866.1| hypothetical protein ANACAC_02571 [Anaerostipes caccae DSM 14662]
          Length = 433

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 134/384 (34%), Gaps = 42/384 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +    +   +     IP+     +LG +      A        +A++G+ GKTTT  M
Sbjct: 77  AAIHPENEEYKAALQKGIPLMKRATLLGQMMHNYKNA--------VAVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L          G  +  I V   L  +  ++  G   + ++   E         P 
Sbjct: 129 LSHIL--------LAGETDPTITVGGILDIIDGNIRVGHSNVFVTEACEYTNSFLEFFPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  I   H+  F  I EI  +  +    L + G + LN +      +     A    
Sbjct: 181 ISIILNIEEDHMDFFHDINEIRDSFKKFAHKLPEDGLLVLNGEIDDISYIVEGLKA---- 236

Query: 246 TIYSFGKSKN-ADFQLRKWKQCS-EQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
              ++G   +   +  +     S      ++  +G  ++ +  +  G H   N L    +
Sbjct: 237 KYVTYGIDNDEFTYTAKNISYDSMGHGHFDLYKEGTFVDSLSLNVNGLHNINNALSAAAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +DT    L  F    G  +R+      G FT+ID+ Y  +P  +KA ++    
Sbjct: 297 ADFLGLSIDTVKAGLLTFS---GAKRRFEYKGTCGGFTVIDD-YAHHPTEIKATLNACKN 352

Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R  A L +  E   LSQ  H+ + ++ +            H   
Sbjct: 353 YPHKELWCVFQPHTYTRTNAFLDEFAE--ALSQCDHVIITDIYAAREKD---TGMVHARD 407

Query: 414 LKDALPR-SIHVHYSETMDGLFLF 436
           L D + +    V Y +  D +  F
Sbjct: 408 LADKIEKTGTDVRYIKDFDAIEEF 431


>gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 491

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 126/417 (30%), Gaps = 51/417 (12%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   +  +  DSR+  P   + A  G +  G  F+   V KG    + +   V  +  
Sbjct: 15  GDPDRDITSVDNDSRTTKPGGLYAAFPGANVHGASFVTQLVDKGVRAFLTDPAGVEIMRE 74

Query: 81  LSIPV----FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             + +      V +   A+     A          +  +TG+ GKTTT  +L   L ++ 
Sbjct: 75  AQVDLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMFGVTGTNGKTTTTFILDAFLQALG 134

Query: 135 KTYACIGSYNNHIGVPLT---------------LARM-PVDVDFGIFELGMSHLGEIRFL 178
            T   IG+    I                    LARM    VD    E+    L + R  
Sbjct: 135 HTTGLIGTVATVIAGDRVDSVRTTPEASALHQLLARMRDAGVDTCSMEVSSHALSQHR-- 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V   +   T ++  HL     ++E  SAKA +F     +  + +  DD        K
Sbjct: 193 VDGVHFDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPEFASRGVVVLADD-----WARK 247

Query: 239 SHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             ++    + +   +     D+         +    E+      +       G     N 
Sbjct: 248 LVSVSQIPVVTVSMNSEDKPDY------LVVQGDSWELHTPQGRIPFTPVLPGLFNVTNT 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            + L ++       D      +          R      +    +ID  Y+  P +++  
Sbjct: 302 ALALAMLLEFGVQFDAVASIANGTEVVVPG--RMEVVNAEHPRAIID--YSHTPDAIEKV 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +  LS                    G+   +    +  V +      V ++  +  +
Sbjct: 358 LDRLSGDPVVVVV---------GAGGDRDSTKRAAMG-VAAARGADVVIVTDDNPRS 404


>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
 gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
          Length = 465

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 137/365 (37%), Gaps = 41/365 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  + ++  A  L      I++TG+ GKTTT  ++   +SS  K    +G+  N     +
Sbjct: 109 IKVIGEIEFAYNLIPDRNYISVTGTDGKTTTVNLIYSIISS-YKKARLLGNVGNTFSKEV 167

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  D+   + EL    L            HI+VI  IA  HL  +  IE+  +AK 
Sbjct: 168 ESIEKDEDI---VLELSSFQL----ETVDNFHSHISVILNIAEDHLDRYKDIEDYFNAKK 220

Query: 212 EIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            I +       + LNYD+S+      EL+K K  +  + T  +  K+K A+       +C
Sbjct: 221 NITKNQNSNDFLILNYDNSYTNSYYNELIKTKDISFNVLTFST--KNKEANLYYNSEDEC 278

Query: 267 SEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  +   G+ +  +     +G H  +N+L ++         ++   KA++ F   E
Sbjct: 279 -------LYYNGEKIFSIAKRKLLGMHNIENILASVLACIKDNIPIEYIDKAVNNFKSIE 331

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R            I++S      SM A +S L     +     I ++G   +  + 
Sbjct: 332 ---HRLEFVKEIDGVRYINDSKA---TSMSAVMSALKSFDKNI----ILIMGGRNKGIDF 381

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                    + +    +  + L+G     L   +  S  +   +     F + +   V G
Sbjct: 382 KP------LKSIIEERVKKLILTGEASEDLSSMIDVSNKII-IKDFTEAFDYAKKIAVKG 434

Query: 445 DVVVV 449
           D V++
Sbjct: 435 DTVLL 439


>gi|149190166|ref|ZP_01868442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
 gi|148836055|gb|EDL53016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
          Length = 442

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 177/458 (38%), Gaps = 60/458 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGIS----------IDSRSIAPQEAFFAIKGPHYDG 53
           + ++ D+ Q +    +GI     VN +S          +DSR   P       +G     
Sbjct: 1   MDSWQDIKQVV-VVGLGITGLSVVNHVSKNHPDVTVRVMDSRENPPGAEQLP-EGAELHA 58

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             F    + + A L+V N  +  +   +   +     V+G + +L   A   +   +IAI
Sbjct: 59  GSFNTEWLNQ-ADLIVCNPGIALATPEIQQALEKGIRVVGDI-ELFAWA---TTKPVIAI 113

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GK+T  ++      +        G+        L L  +  D    + EL    L 
Sbjct: 114 TGSNGKSTVTDLTGAMAKAAGINVGVGGNIGVP---ALDLLELNAD--LYVLELSSFQL- 167

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                T+ ++  ++    ++  H+  + G+E+ A AK  IF   E      +N D+    
Sbjct: 168 ---ETTYSLKTKVSTFLNLSEDHMDRYHGMEDYAQAKRRIFFNAEH---ALVNRDEP--- 218

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYH 291
                S  L    + +FG ++  DF +R+         + +   G+++        +G H
Sbjct: 219 ---ETSPELAGLPVATFGFNEQ-DFGMREID-----GQVWLVDNGETIISTDQLRLVGKH 269

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L+   ++ +   +    +  L+ +    G   R +   ++     +++S   N A
Sbjct: 270 NWSNALVACALLKLSGINYRKGLACLAAYT---GLSHRCQVVADEKGVKWVNDSKATNVA 326

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S  AA+S L+      EG+   ++G + +  + S     +LA+ LS  N+  +   G   
Sbjct: 327 STLAALSGLT-----LEGKLYLLVGGVGKGADFS-----ELAKPLSELNV-KLCCFGRDG 375

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  P ++     +T++ +   I   L  GD+V++
Sbjct: 376 EEFMALHPSAVR---YDTLNNVLTDITPELQKGDMVML 410


>gi|125625078|ref|YP_001033561.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166224698|sp|A2RNJ0|MURC_LACLM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124493886|emb|CAL98880.1| UDP-N-acetyl muramate-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071883|gb|ADJ61283.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 443

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 118/351 (33%), Gaps = 44/351 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T I + G+ GKT+T  ML   +S+I  T   IG             R  
Sbjct: 93  HEFLGHFMEDFTSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDG---------TGRGN 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ +FE       E         P   ++T I   H   F GIE++ SA  +    +
Sbjct: 144 AGSEYFVFE-----SDEYERHFMPYHPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNI 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   IF   +D     L AK+       IY +G   N D++     + +  S  +   +
Sbjct: 199 KKG--IFAYGEDVNLRKLSAKA------PIYYYGFEANDDYRAENLIRSTRGSSFDAYFR 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   V    G H   N L  + +   L  D+      L  F   + R    +     
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTDVADHLLTFRGVKRRFTEKKV---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  ++A +    Q            PH   R IA   +  E+ +   
Sbjct: 307 -GETVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLD--- 362

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             H D   +  +Y     V         L D + +   V   + +  L   
Sbjct: 363 --HADTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIELDNVSPLLDH 411


>gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 483

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 152/459 (33%), Gaps = 61/459 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR +     FFA KG  +   +++  A+QKG    V   D       L 
Sbjct: 32  ENPSFSKISFDSRDVDSSTLFFA-KGATFKK-EYLEQAIQKGLPFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
           IP   V D+  A++   +        K  IIA TG+ GKTT        L    K   ++
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTTAAYFAYNILKQSHKPAMFS 144

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFL---THLVRPHI 186
            + +  +      +    P  +D           GM+HL        +L    + +   +
Sbjct: 145 TMNTTLDGKTFSKSKLTTPESLDLFKMMATAVDNGMTHLIMEVSSQAYLVDRVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+        E+    K  +      +  + +N     F+++  +   L  
Sbjct: 205 GAFLNISPDHIGPIEHPTFEDYFYHKRLLMAN---SKAVVVNAGMDHFKVVAEQVADLPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                +GK  +   +             +  + GK +       IG    +N L      
Sbjct: 262 D---FYGKDSDNTIE--------NGRTFDFDVTGKLAGHYDIQLIGSFNQENALAAGLAC 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K ++        G+        G    +D  Y  N  S++  +SV+ + 
Sbjct: 311 LRLGTSPEDIKKGIA---ETSVPGRMEVITQANGAKVFVD--YAHNGDSLEKLLSVVEE- 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
             H  G    +LG     G   +S   D A V++ +    V L+          A+ + +
Sbjct: 365 --HQTGNLHLILGA---TGNKGESRRADFARVINAHPNLQVILTADDPNYEDPKAIAEEI 419

Query: 419 PRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
              ++       +    +   +  +    D V++  K +
Sbjct: 420 ASQVNRPLEIEVDREKAIAKAMSLTQTADDAVIIAGKGA 458


>gi|187735166|ref|YP_001877278.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425218|gb|ACD04497.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 765

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 148/422 (35%), Gaps = 53/422 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +A+   L+IP     + L A+          +    + ++G+ GKTTT  +
Sbjct: 82  SAIRADNPALAAARKLNIPCMRRAECLAAIL---------NGKKGVVVSGTHGKTTTSAL 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               +                I V  T A    D ++ + E   S    + ++     P 
Sbjct: 133 CAHLMRE--GRMRPCHYVGAEIPVLGTNAHWNEDSEYLVAEGDESDGTLVNYI-----PE 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            +++  I P HL ++  ++EI +    +       G I         E + AK       
Sbjct: 186 HSIVLNIEPEHLDHYKDLDEIKAVFDRLCSQTR--GKIIYCRAHPGAEDVCAKYPNS--- 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIV 303
              S+G S +AD+      +   ++   V L+GK     V     G H   N L  + + 
Sbjct: 241 --VSYGWS-DADYTATDVLERRGRTLFTV-LKGKEELGRVELGIPGRHNVLNSLAAIALA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
           + L  D     + L+ F    G  +R+          ++D+ Y  +P  + A +      
Sbjct: 297 TELGVDFPAVTRGLASF---AGAKRRFETKYLSSSIRIVDD-YGHHPTEIAATLQTARSL 352

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R   +  D  ++ + +     DL  V  +Y  S + + G     +
Sbjct: 353 QPNRLVVYFQPHRYTRTQLLADDFGKVLQEA-----DLVFVADVYPASELPIEGVSGQTI 407

Query: 415 KDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC---GFYRLIN--LLLEE 467
            +A+ R   +   Y   +      I ++L  GD+ +   + +    G  R+     LLE+
Sbjct: 408 INAMHRHGPVETRYLPDLGIAHHTIGNALKPGDLFLTLGAGNVHECGM-RIARDLALLED 466

Query: 468 FP 469
             
Sbjct: 467 LE 468


>gi|116512986|ref|YP_811893.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123320128|sp|Q02W92|MURC_LACLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116108640|gb|ABJ73780.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 443

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 118/351 (33%), Gaps = 44/351 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T I + G+ GKT+T  ML   +S+I  T   IG             R  
Sbjct: 93  HEFLGHFMEDFTSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDG---------TGRGN 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ +FE       E         P   ++T I   H   F GIE++ SA  +    +
Sbjct: 144 AGSEYFVFE-----SDEYERHFMPYHPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNI 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   IF   +D     L AK+       IY +G   N D++     + +  S  +   +
Sbjct: 199 KKG--IFAYGEDVNLRKLSAKA------PIYYYGFEANDDYRAENLIRNTRGSSFDAYFR 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   V    G H   N L  + +   L  D+      L  F   + R    +     
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTDVADHLLTFRGVKRRFTEKKV---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  ++A +    Q            PH   R IA   +  E+ +   
Sbjct: 307 -GETVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLD--- 362

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             H D   +  +Y     V         L D + +   V   + +  L   
Sbjct: 363 --HADTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIELDNVSPLLDH 411


>gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 297

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 29/279 (10%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHA 241
           + T +   HL     +EE   AK  +F  L       +     LN DD+  E     + A
Sbjct: 1   MFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRSTAA 60

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L    
Sbjct: 61  ----TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATA 116

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +    + T I  +       G   R+        +T+I + Y   P S++  +    
Sbjct: 117 AGLVSGVKLQTIIAVIKELAGVPG---RFEVVDGGQNYTVIVD-YAHTPDSLENVLKTAK 172

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
           Q +   +G    ++G     G+  ++    +A V + Y    ++ S         A+ D 
Sbjct: 173 QFA---KGDVYCIVGC---GGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 226

Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    +  E             +++   D++++  K 
Sbjct: 227 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 265


>gi|86609024|ref|YP_477786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|109892749|sp|Q2JL88|MURC_SYNJB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86557566|gb|ABD02523.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 478

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 138/384 (35%), Gaps = 49/384 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIG 141
           + V+   D+L AL               I + G+ GKTTT  M+  + LS+       IG
Sbjct: 103 LTVWHRADLLAALFNRRSG---------IGVAGTHGKTTTSSMIGYVLLSAGWDPTLIIG 153

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              +       L +     ++ + E+  S    +R     + P I VIT I   H  +++
Sbjct: 154 GEVDAWDGNARLGKG----EYWVAEVDESDGSLVR-----LYPKIGVITNIELDHPDHYA 204

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            + ++  A  +  +    + T+    D          +  L +   YS      A +Q R
Sbjct: 205 DLGQVIRAFQQYGQQ---SQTLVACLDCPNV------AAHLRVDVGYSLTGHPQAQYQAR 255

Query: 262 KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +    +  +  E+  +G  + ++    +G H   N L  + +   L  +      AL+ F
Sbjct: 256 QILYTASFTCAEIWEKGSLLGQLRLQVLGSHNLSNALAAVAVGRQLGLEFAVIASALAQF 315

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--------QISPHGEGRRI 372
               G  +R+      G  T ID+ Y  +P+ ++A +               PH   R  
Sbjct: 316 ---RGAHRRFEHKGEVGGVTFIDD-YAHHPSEIRATLQAARLQQRRVVAVFQPHRHSRLA 371

Query: 373 AVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETM 430
           A+  D     GE       D+  ++  Y        G   L L  A+     HV Y  ++
Sbjct: 372 ALFQDFARCFGE------ADVVVIVPTYGAGEPAPEGSDSLRLAVAVAEHHPHVRYVSSL 425

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNS 454
             L   + S L  GD+ V   +  
Sbjct: 426 PQLPEVLPSVLQPGDLAVFLGAGD 449


>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 450

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 127/354 (35%), Gaps = 35/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++      R    IIAITGS GKTT   ++              G+    + +   + R 
Sbjct: 104 EIFAHIANRRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGTPV-LEAEMQRG 162

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G
Sbjct: 163 GKKAGVWVLELSSFQLEN----TESLRPSAAAVLNISEDHLDRYDDLLDYAHTKDKIFRG 218

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   LN DD+    +K        + +  F   K AD+ L +     E   ++   
Sbjct: 219 V---GVQVLNADDALCRAMK-----RAGRGVKWFSLEKQADYWLER-----ETGRLKAVS 265

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H A N++  + +   +    +  +K +  F   +G   R      +
Sbjct: 266 DDLMNTTDIPLQGLHNAANVMAAVALCEAVGLPREELVKHIQTF---KGLPHRVEKIGEK 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAIS L            A+LG + +  + +      LA+VL
Sbjct: 323 NGVVFIDDSKGTNVGATAAAISGLQS-------PLFAILGGLGKGQDFTP-----LAQVL 370

Query: 397 SLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  V L G     + +D     +++    T+        +    GD+V++
Sbjct: 371 -RGKVKAVLLIGRDAPQIRRDLAGAGLNLIDCATLQEAVQTAYAQAQSGDIVLL 423


>gi|16332094|ref|NP_442822.1| UDP-N-acetylmuramate--L-alanine ligase [Synechocystis sp. PCC 6803]
 gi|3122411|sp|P74528|MURC_SYNY3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|1653723|dbj|BAA18634.1| UDP-N-acetylmuramate-alanine ligase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 137/385 (35%), Gaps = 46/385 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACI 140
           + P++   D+L AL   +           I + G+ GKTTT  ++   L          +
Sbjct: 140 NCPIYHRSDILAALIAESRG---------IGVAGTHGKTTTSSLIGYVLKEAGLDPTIVV 190

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G   +       L       ++ + E+  S     +       P I ++T I   H  ++
Sbjct: 191 GGEVDAWQGNAYLG----SGEYLVAEVDESDGSLTKH-----HPEIGIVTNIELDHPDHY 241

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           S + E+           +   T+    D             L     YS      AD+Q 
Sbjct: 242 STLAEVVEIFRTFESHCQ---TLIGCLDCGVVR------QHLSPTITYSLENHPEADYQA 292

Query: 261 RKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           R+ K+ +  + +EV  +G  +  +     G H   N L  + +  +L  D     +A++ 
Sbjct: 293 RQIKRQAHGNEVEVWERGVCLGTMTVTLPGDHNISNALAAVAVGRLLGLDFPVIAQAIAS 352

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDM 378
           F    G  +R+ C       T ID+ Y  +P+ + A ++   Q ++     R +A+    
Sbjct: 353 F---NGAKRRFECKGYCNGITFIDD-YAHHPSELLATLAAAKQKVTHGKYERVVAIF--Q 406

Query: 379 CEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH------VLALKDALPR-SIHVHYSE 428
                 + +F  + A      +   ++ ++ +G           L  A+ +   HV Y  
Sbjct: 407 PHRYSRTHTFMAEFATAFKDADLVVLTDIYSAGEQNPYNIRGEDLAKAVGQHHGHVVYQP 466

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSN 453
            +  L  F+   L  GD+ +   + 
Sbjct: 467 RLTELREFLPKVLQSGDLALFLGAG 491


>gi|296111923|ref|YP_003622305.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc kimchii IMSNU
           11154]
 gi|295833455|gb|ADG41336.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc kimchii IMSNU
           11154]
          Length = 444

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 114/303 (37%), Gaps = 35/303 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+ G+ GKT+T  +L   L +I  T   IG             R      F + E
Sbjct: 103 QTTAIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDG---------TGRGVPSSQFFVVE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   +  I+++  A ++    ++K   IF  
Sbjct: 154 A-----DEYRRHFKDYVPDYAILTNIDFDHPDYYQDIQDVTHAFSDFASHVKK--AIFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD     L  K+       +Y +G + +  DF      + +E S   V  +G+++ E  
Sbjct: 207 GDDEHLRALHPKAD------VYYYGTNSDKDDFVATNIHKSTEGSHFTVVFRGETLGEFS 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +  +   ++    + L  +   + R    + A      T+ID+
Sbjct: 261 VPLFGQHSILNALAVIAVAYMEKVNLTLIRQYLMTYQGVKRRFSEKQIA----DITVIDD 316

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  + A +    Q  P+ +   IA+            ++  + A+ L       V
Sbjct: 317 -YAHHPTEIDATLDAARQKYPNKQ--IIAIF--QPHTYSRVIAYKDEFAKSLE--AADKV 369

Query: 405 WLS 407
           +L+
Sbjct: 370 YLA 372


>gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
 gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
          Length = 522

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 140/377 (37%), Gaps = 38/377 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSL 81
           P+  ++G++ DSR++ P + + A+ G H  G DF   A   GA  V+ +    A++ GS+
Sbjct: 40  PEVVLHGVTHDSRAVQPGDLYAALPGSHAHGADFAAAAAASGAAAVLTDPAGAAALAGSV 99

Query: 82  SIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +PV    D     A     +  +     T++ +TG+ GKTT+  ++   L +       
Sbjct: 100 DLPVVTTADPRSDVAQVADWLYGQPSRSLTLLGVTGTNGKTTSAFLVDAGLRAAGHRTGL 159

Query: 140 IGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +G+    I                   L    +   V     E+    L + R     +R
Sbjct: 160 LGTVETRIADERVDSVRTTPESSDLQALFAVMVERGVTAATMEVSSHALAQHR--VDGLR 217

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSH 240
              A+ T ++  HL     + +   AKA +FE  E+T    +  +    ++   L A+  
Sbjct: 218 FAGALFTNLSQDHLDYHPTMRDYFEAKARLFEP-ERTAASVIGIEPGAGTWGLELAARVP 276

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMT 299
                   ++     AD+        +  S    +  +G ++ +     G     N L  
Sbjct: 277 GS-----VTYAPDPPADWWADDLTVGARGSSFTARGPRGLAVPMEVRLPGRFNVANALGA 331

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++     +   A   +       GR +        G   L    +   P +++   +V
Sbjct: 332 LALLVAAGIEPRAAAAGIGTLAGVPGRMEPIE----AGQPYLALVDFAHTPDAVE---TV 384

Query: 360 LSQISPHGEGRRIAVLG 376
           L+ +    +GR I VLG
Sbjct: 385 LTSVRGLVDGRVIVVLG 401


>gi|58038644|ref|YP_190608.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352635|sp|Q5FUJ4|MURC_GLUOX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58001058|gb|AAW59952.1| UDP-N-acetylmuramate--alanine ligase [Gluconobacter oxydans 621H]
          Length = 477

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 136/426 (31%), Gaps = 58/426 (13%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GHD    A   G   VVV       +   V +  +  IPV    ++L  L +L       
Sbjct: 59  GHD----AANLGDAQVVVTSTAVKKDNPEVVAARAKLIPVVRRAEMLAELMRLR------ 108

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L   +     I   N  I             D+ + 
Sbjct: 109 ---WSVAIGGTHGKTTTTSLVACVLEHARLDPTVI---NGGIIEAYGTNTRMGSGDWMVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    +R     +   IAV+T + P HL ++   E + +   +    +   G   L
Sbjct: 163 EADESDGSFLR-----LPAVIAVVTNMDPEHLDHWGTEEAMQAGYDQFVSNIPFYGFAVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
             D    + +  +   L    + ++G S  AD +  K       +  EV +  +      
Sbjct: 218 CVDHPQVQQMIPR---LSDHRVITYGFSPQADIRAEKVVMDKRGATFEVVVTNRQRNRSR 274

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G+H   N L  + +   +         AL+ F   + R  R      +  
Sbjct: 275 RAGPFRLPMLGHHNVLNSLAAIAVALEMEISDSVIASALTTFKGVKRRFTR----TGEYN 330

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
              I + Y  +P  + A +    Q         + PH   R   +  + C     + +  
Sbjct: 331 GISIVDDYGHHPVEIAAVLKAARQAGARNVIAVMQPHRYSRLKVLFNEFCTCMNDADT-- 388

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
                V  +Y      + G    AL + L    H           L   I +    GD V
Sbjct: 389 ---VIVADVYAAGETPIEGAGRDALVEGLRDRGHRSVVPLPDPAHLAEMINAIAKPGDYV 445

Query: 448 VVKSSN 453
           V   + 
Sbjct: 446 VCLGAG 451


>gi|295425329|ref|ZP_06818032.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065105|gb|EFG56010.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 437

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 143/417 (34%), Gaps = 59/417 (14%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + KG      N   V +    ++      D +  + ++          T I ++G+ 
Sbjct: 67  EQVIVKG-NAFKENNPEVKACLDKNVKWQSYPDTVEEIVQMH---------TSIGVSGTH 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+T  +L+  L  +  T   IG             +   D  F ++E       E R 
Sbjct: 117 GKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVADSRFFVYEA-----DEYRR 162

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P   ++T I   H   F    +  SA     +  +K   +F+  DD   + LK 
Sbjct: 163 HFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKK--ALFVWGDDKRLQSLKT 220

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
                     Y++G S + DFQ    ++ +  S   V   G+ + +   H  G H   N 
Sbjct: 221 SIPK------YTYGFSDSDDFQAVNVEKSTTGSKFNVLAHGEDLGQFEIHLFGDHSILNS 274

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + +       ++   K L  F   +    R     +     +ID+ Y  +P  M+A 
Sbjct: 275 TAVIAVAYTEKVPMEDIKKGLLTFKGAK----RRFSEKDFNDIAVIDD-YAHHPTEMRAT 329

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK- 415
           I    Q     E + + V          ++ +  D  E+L   ++   +++  +  A + 
Sbjct: 330 IQAARQ--KFPEKKLVVVF--QPHTFSRTKKYQKDFEEIL--RDVDKAYVTPIYASAREA 383

Query: 416 ------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFYRLI 461
                 + L ++I       +D +    +++     V+V   +         F +L+
Sbjct: 384 NGDISSEDLVKNIPGSEVIDLDNIADLTKNN---NSVIVFMGAGDIPKYEDAFEKLL 437


>gi|291166629|gb|EFE28675.1| UDP-N-acetylmuramate--alanine ligase [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 122/369 (33%), Gaps = 40/369 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+               Y+  I V   L  +  +   G  E  ++
Sbjct: 105 IAISGTHGKTTTTSMLS--------VLYSYSDYDPTILVGGNLKEINGNFRIGNSEHFIT 156

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P   +I  I   HL  F  ++ I  +  +  + +   G    N DD 
Sbjct: 157 EACEYFDSFLDLYPKFGIILNIEADHLDYFDSLDVIIQSFRKFSQNVSSNGYTIANGDDQ 216

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGI 288
                  ++    +     FG  KN D  +              +QL    +        
Sbjct: 217 NV-----RTALKDLPNCILFGYDKNNDAVIVDNSFDKNGNGHFSIQLDSDILGPFSIKVP 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +         ++     +  +H  +   +R++   N G   L+ + Y  
Sbjct: 272 GKHNIMNATAAILTAYKDDIPLEKIQHGIFSYHGVD---RRFQYKGNYGD-VLVYDDYAH 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P+ +KA +S    ++P+   R +A+          ++S   + A   S Y+   V ++ 
Sbjct: 328 HPSEIKATLSAAKFLNPN---RLVAIF--QPHTYTRTKSLLEEFA--TSFYDADIVIITD 380

Query: 409 FHVLALKD------------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +     D                     +   +  L  ++   L   D++    +    
Sbjct: 381 IYASRETDTGLVSSQDLVNRLKAHGKDAIHLNDITELQNYLDPILQKNDIIFTIGAGDV- 439

Query: 457 FYRLINLLL 465
            Y+L   LL
Sbjct: 440 -YKLGEQLL 447


>gi|86606524|ref|YP_475287.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. JA-3-3Ab]
 gi|109892748|sp|Q2JTH3|MURC_SYNJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86555066|gb|ABD00024.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. JA-3-3Ab]
          Length = 510

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 137/385 (35%), Gaps = 45/385 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              + V+   D+L AL               I + G+ GKTTT  M+   L +       
Sbjct: 114 DKGLKVWHRADLLAALFNHR---------PSIGVAGTHGKTTTSSMIGYMLLAAG----- 159

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
              ++  + +   +     +   G  E  ++ + E       + P I VIT I   H  +
Sbjct: 160 ---WDPTLIIGGEMDAWDGNARLGQGEYLVAEVDESDGSLVRLYPQIGVITNIELDHPDH 216

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           ++ +E++  A  +  +    + T+    D          +  L +   YS      A +Q
Sbjct: 217 YANLEQVIRAFQQYGQQ---SQTLVACLDCPNV------ATHLKVDIGYSLAGHPQAQYQ 267

Query: 260 LRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            R+    ++ +  E+  +G  + ++    +G H   N L  + +   L  +      AL+
Sbjct: 268 ARQILYTADCTSAEIWERGSLLGQLRLQVLGSHNLSNALAAVAVGRQLGLEFAVIASALA 327

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    G  +R+      G  T ID+ Y  +P+ ++A +          + R +AV    
Sbjct: 328 EF---RGVQRRFEVKGEVGGVTFIDD-YAHHPSEIRATLRAAR----LQQRRVVAVF-QP 378

Query: 379 CEMGELSQSFH--------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSET 429
                L++ F           +  ++  Y        G   L L  ++     HV Y  +
Sbjct: 379 HRHSRLAKLFQDFACCFADAQVVVIVPTYGAGEAAPEGSDSLRLAVSVAEHHPHVRYVSS 438

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  L   + S L  GD+ +   +  
Sbjct: 439 LPQLPQVLPSILQPGDLAIFLGAGD 463


>gi|296166019|ref|ZP_06848471.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295898640|gb|EFG78194.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 486

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 148/415 (35%), Gaps = 40/415 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL         ARL    T + +TG+ GKTTT  M
Sbjct: 82  AAIPKTNPELVEARRRGIPVILRPAVL---------ARLMEGRTTLMVTGTHGKTTTTSM 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL    +        +    V   L     +   G  +  ++   E         P+
Sbjct: 133 LIVALQHCGR--------DPSFAVGGELGEAGTNAHHGSGDCFVAEADESDGSLLEYTPN 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I   HL  +   +          E L   G + +  DD     L  ++  LGI+
Sbjct: 185 VAVVTNIETDHLDFYGSADAYVGVFDAFVERLAPGGALVVCVDDPGAAALAERTAELGIR 244

Query: 246 TIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLG 301
            +  +G     D       W+Q   ++   +QL G+S    +     G HMA N L  L 
Sbjct: 245 -VLRYGSGPGGDHAATLLSWEQQGTEAVAHIQLAGESHPRVMRLSVPGRHMALNALGALL 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               + A VD  +  L+ F   EG  +R+    N G   + D+ Y  +P  + A ++ + 
Sbjct: 304 AAVEIGASVDAVLDGLAGF---EGVRRRFELVGNAGSVRVFDD-YAHHPTEISATLAAVR 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVL 412
            +     G R  V+     +   ++ F               VL +Y      L+G    
Sbjct: 360 TVLEQSGGGRSLVVFQ-PHLYSRTKEFAELFGRALDAADEVFVLDVYGAREQPLAGVSGA 418

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLL 465
           ++ + +  S+ V Y      +   + ++   GDV+V   +         ++  L 
Sbjct: 419 SVAEHV--SVPVRYLPNFSAVAEQVAAAAGPGDVIVTMGAGDVTLLAPEIVTELR 471


>gi|221217628|ref|ZP_03589097.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224533430|ref|ZP_03674023.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225550260|ref|ZP_03771219.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226320864|ref|ZP_03796416.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
 gi|221192574|gb|EEE18792.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224513392|gb|EEF83750.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369128|gb|EEG98582.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226233730|gb|EEH32459.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
          Length = 468

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 141/393 (35%), Gaps = 41/393 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + M    +  I E       E +       P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAMAGISNIFIVE-----TCEYKNHFLNFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A       L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLRYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-----VD 311
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                  +     G  +R      +     +D+ Y  +P  +K   + L  I    + +R
Sbjct: 312 FKEAIKRIAKNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKNKR 367

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALPR- 420
           I +L  M      ++ F  D  EVLS  +I             +      + L   + + 
Sbjct: 368 I-ILDFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIKKI 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 427 NKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|254411000|ref|ZP_05024778.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182355|gb|EDX77341.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
          Length = 512

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 141/398 (35%), Gaps = 48/398 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIG 141
            P+F   D+L AL +             IA+ G+ GKTTT  ++   L          +G
Sbjct: 136 YPIFHRSDLLAALMQ---------DYRSIAVAGTHGKTTTSSLMGYLLLKTGLDPTIVVG 186

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
              +       L + P    F + E   S  G +  L     P I VIT I   H  ++ 
Sbjct: 187 GEVDAWQGNARLGKSP----FLVAEADESD-GSLAKLA----PEIGVITNIELDHPDHYQ 237

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++++        +  +   TI    D                   YS  ++  AD+ + 
Sbjct: 238 NLDQVIETFKIFADRCQ---TIVGCIDCQTLR------SHFTPTISYSLQRTAGADYSVD 288

Query: 262 KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +    +E     +    + +  +    +G H   N L  + +   L  + D    AL+ F
Sbjct: 289 RIVYQAEGITARIWEGDQVLGTLQLSLLGQHNLSNALAVVAVGRHLGLEFDAIASALATF 348

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              EG  +R+         T +D+ Y  +P+ ++A ++  +++      R +A+      
Sbjct: 349 ---EGAKRRFEVRGECKGITFVDD-YAHHPSEIQATLAA-ARLQVELSRRIVAIF--QPH 401

Query: 381 MGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV-------LALKDALPRSIHVHYSETM 430
               + +F  D A+     +   ++ ++ +G                      V+Y  T+
Sbjct: 402 RYSRTLTFLSDFAKSFGDADLVVVTDIYSAGEAGVGQITGEQVRAAIADHHERVYYQPTL 461

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           D +   +   L  GD+ +   +      ++I  ++E +
Sbjct: 462 DEVSQLLAQILQPGDLAIFLGAG--NLNQIIPQVIESY 497


>gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
 gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
          Length = 571

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 127/397 (31%), Gaps = 42/397 (10%)

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV    D    L      V     +  T++ +TG+ GKTT   +L   L +   T   IG
Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211

Query: 142 SYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIR------------FLTHLVRPHIA 187
           +    +   +  ++   P   D       M+  G                    +R   A
Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T ++  HL     +E+  +AKA +F   E+TG   ++ D  +   L A          
Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFTP-ERTGVSVIDTDTPWGRQLAAAVPGA----- 325

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + G + +A ++          +    +   G  + V     G     N L+ L ++   
Sbjct: 326 ITCGTAADAHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNVGNALVALALLVAT 385

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A   L+      GR +R      Q F  L+D  Y   P +++   ++L  + P 
Sbjct: 386 GVPAPVAAAGLASLPGVPGRMER--VDAGQPFLGLVD--YAHTPDAVQ---TLLRTVRPL 438

Query: 367 GEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVW-LSGFHVLALKDAL 418
             GR I VLG   +     +           DLA   S    S    L    +      L
Sbjct: 439 VSGRVIVVLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGVGTL 498

Query: 419 PRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           P S    V                   GD VV+  K 
Sbjct: 499 PPSARGRVMVEPDRAAAIRRAVGFARPGDAVVLAGKG 535



 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
          L    G   G+V    V GI+ DSR++ P + + A+ G    G  F+  
Sbjct: 22 LAVTGGAVAGVV----VRGITHDSRAVRPGDLYAALPGARAHGAAFVRQ 66


>gi|71082732|ref|YP_265451.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|109892719|sp|Q4FPK6|MURC_PELUB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71061845|gb|AAZ20848.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 464

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I +TGS GKTTT  +L    S  K     I G   N I     L +     D+ I E   
Sbjct: 111 IVVTGSHGKTTTTSLLASIFSKTKLDPTIINGGVLNAIKNSAKLGK----SDWCILEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    I      V P  +++T I   H+  ++ ++++     +    +   G  F+  DD
Sbjct: 167 SDGSFIH-----VPPTYSIVTNIDREHMDFYNSMKDLKELFIKFINKVPSFGKSFICIDD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKS----MEV 283
              + L +K   L +K  Y++G    ++F ++  KQ  E S  +  + L GK      ++
Sbjct: 222 KNNKDLLSK---LKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPGKKNLTIRKI 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  +N    + +   +    +   K L  F   + R  +        F+    
Sbjct: 279 KLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFTHRETNFY---- 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-----IDLAEVLSL 398
           + Y  +P  ++  ++ +     + E   I     +  + +L + F       D+  +  +
Sbjct: 335 DDYAHHPTEIREVLNGVRAAYKNEEVICIFQPHRISRLKDLKKEFSLSFKKADVVILCPI 394

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSN--S 454
           Y        GF        + ++  V     E    L  FI++++    +VV   +   S
Sbjct: 395 YTAGEKIKLGFKYNNFAKDIVKNSKVRLFMVEDQYQLAKFIKNTIFGKKIVVGMGAGTIS 454

Query: 455 CGFYRLINLL 464
               +L  L+
Sbjct: 455 AWMRQLPELI 464


>gi|21674299|ref|NP_662364.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
 gi|21647471|gb|AAM72706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
          Length = 474

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 138/380 (36%), Gaps = 31/380 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + T I + G+ GKTTT  ++   L +        IG    + G     + +  +  F + 
Sbjct: 104 RHTSIVVAGTHGKTTTTSLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGL-SEPGFFVT 162

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +  RP IA+I  +   H   F  +++I  +   +   +   G +
Sbjct: 163 EGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFRLLVNLVPSNGLL 222

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
            +N DD     + AK+       + +FG + NA++        ++ +   V    +++  
Sbjct: 223 IVNADDPNSMEVSAKAFC----RVETFGLNGNAEWTAADIATDTDGTSFTVVRDSEAIGR 278

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G +   N L             ++  + L  F   + R +        G  TLI
Sbjct: 279 VKVPLFGNYNVMNALAATAAAIRAGVSFESVTRGLCSFKRPKRRMEL--VGEYAGGITLI 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++ +  +P +++     L  I+ H  GRRI    +          F  +L+E      I 
Sbjct: 337 ED-FAHHPTAIRL---TLGAIAEHYPGRRIIACFEPRSNTTSRNIFQHELSECFGDAAIV 392

Query: 403 HV--------WLSGFHVLAL---KDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVV 448
            +        +     + A    ++       V  + +    + +  FI++    GDVVV
Sbjct: 393 VLGKVNRPERYAPEERLDAALLCRELKANGKRVFAAGSENYPEDIVRFIEAEQQPGDVVV 452

Query: 449 VKSSNSCGFYRLINLLLEEF 468
           +  SN   F  L  +L E F
Sbjct: 453 LL-SNGS-FSGLKEMLAESF 470


>gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 500

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 145/455 (31%), Gaps = 67/455 (14%)

Query: 20  GIVPQGF-VNGISIDSRSIAPQEAF-FA-----IKGPHYDGHDFILHAVQKGAGLVVVNT 72
           G  P    +  I  DSR   P++ F         KG       FI       A +++++ 
Sbjct: 23  GKNPDSVPIEYIQSDSRKTNPEDIFCVPESIGTKKGE------FIS---NTKASVILLHR 73

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               SI S  I +   +D      ++A            I+A+TG+ GKT+   +L    
Sbjct: 74  SSNISIDSSKIVLECEEDPEQLQGRIASFLLGHPSKTLEIVAVTGTNGKTSLTNILFALA 133

Query: 131 SSIKKTYACIGSYN-----NHIGVPLT---------LARMPVDVDFGIFELGMSHLGEIR 176
               K    IG+         I    T         + +   D       +  S  G   
Sbjct: 134 KDQGKICGLIGTIGVKFGDRSIDTGYTTPDASSLNLILKQMKDEGVTTVFMEASSHGLKL 193

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFL----NYDDS 230
                +     V T +   HL   S +E+   +K  +FE L+  K+    L       + 
Sbjct: 194 GRIGGISLKAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDVSKSPFAVLDYSSPGGNE 253

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIG 289
               ++     L IK +   G     ++++       + +   + L G +S  +  + +G
Sbjct: 254 LHRKIRNNLPDLPIKALDGIG----GEYKVSNPFLTLQGTSYVLSLPGNRSQTISTNLLG 309

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N  +       L  D      +L       G   R++   ++    +    Y   
Sbjct: 310 SFNVRNTALAFLTGLGLGLDPKGMFSSLKEIPQIPG---RFQIVYSKDRSRMAVVDYAHT 366

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++  I  +    P    R I + G   +  +  +     +AE LS      V L+  
Sbjct: 367 PDALENIIRSVRNSRPK---RLITLFGCGGDRDKTKRPKMARIAEELS----DQVILTSD 419

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +                SE  + +   IQS    G
Sbjct: 420 NPR--------------SEKPEAILDEIQSGFSPG 440


>gi|241896081|ref|ZP_04783377.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella paramesenteroides
           ATCC 33313]
 gi|241870681|gb|EER74432.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella paramesenteroides
           ATCC 33313]
          Length = 449

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 154/444 (34%), Gaps = 68/444 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           + +  +   S D+ +I P             G+ F    V+  A L + +          
Sbjct: 49  LEEAEIQIYSFDAANIKPGMTVIR-------GNSFEDDQVEVAAALAMADE--------- 92

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + +    D++  L          ++ T I + G+ GKT+T  +L+  LS I  T   IG
Sbjct: 93  -LTILTYPDMVEQLI---------TQYTSIGVAGAHGKTSTTGLLSHVLSGIAPTSYLIG 142

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                        +   +  F IFE       E R       P  A++T I   H   ++
Sbjct: 143 DG---------TGKGVPNARFFIFEA-----DEYRRHFKDYTPDYAIMTNIDFDHPDYYT 188

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQL 260
           GI+++ SA  +    ++K   IF   DD     +K          +Y +G + +  DF  
Sbjct: 189 GIDDVRSAFEDFGNNVKKG--IFAWGDDEQLRKIKVSV------PVYYYGTNPETDDFYA 240

Query: 261 RKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              K+ ++ S  +     + +        G H   N L  + +      +     + L  
Sbjct: 241 TNIKRSTKGSSFDAYYHDEFLGNFKVPLFGQHGVLNTLAVVAVSYFEEIETQLIQEELLT 300

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F   +    R     + G  T+ID+ Y  +P+ + A I    Q   + + +  AV     
Sbjct: 301 FQGVK----RRFTEKHIGPVTIIDD-YAHHPSEITATIDAARQ--KYPDRKLTAVF--QP 351

Query: 380 EMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF-- 434
                + ++  D A+ L L +   ++ ++ S         A+  +         +G+   
Sbjct: 352 HTFSRTIAYQDDFAKALDLADNVFLTEIFAS---ARETAGAISSADLGKKISKFEGIVSP 408

Query: 435 LFIQSSLVDGDVVVV-KSSNSCGF 457
             +   L D D V V   +     
Sbjct: 409 TEVAPLLADEDGVFVFMGAGDLQM 432


>gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
 gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
          Length = 488

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/473 (15%), Positives = 143/473 (30%), Gaps = 54/473 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + +            + GI  DSR + P  A   +        D++  A ++GA  ++
Sbjct: 2   LAEGLGQLHAESSDDVLIMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATAII 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTI 128
                V S     +PV  +  +  A   L    R   ++     ITG+ GKT+   ML  
Sbjct: 62  AVGVSVTSD----LPVLHLASMQQAGLLLRRLFRTEEARTHFYGITGTDGKTSVAWMLRE 117

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM----------------SHL 172
           AL+  +            +  P  +  +       +    M                S  
Sbjct: 118 ALTRYQPKPVWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSVACEISSH 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSF 231
           G  +     +  H A+ T +   HL +  G E     KA   +      G +  N D + 
Sbjct: 178 GIAQERIAGIDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAHGGNVVANADHAD 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                 +           +G     D     W+Q           +G+ +        +H
Sbjct: 238 IREHAPEHAC-------WYGHGLYRDDVDLAWEQELPGLLRLKSAEGEVVIEDIPLGDFH 290

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                 + L ++  +   +    K L       GR +       Q     +   Y   P 
Sbjct: 291 AENVACVALTLMVSMAIPLADLPKLLGRISAPPGRMQEVTAGYGQ-----VYIDYAHTPE 345

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
           ++   +    +++     R + V G     GE  +     +  +        VW++    
Sbjct: 346 ALDRCLQAARKLT---RARLMVVFGC---GGERDREKRPQMGAIAVE-QADLVWITSDNP 398

Query: 408 -GFHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            G     +   + + +   Y+         D       ++L +GD++++  K 
Sbjct: 399 RGEMPAVIASEIEQGMSQPYAAEVRLQLDRDKAIGEAIATLAEGDLLIIAGKG 451


>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
          Length = 438

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  + +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALARVALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
 gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
          Length = 449

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 122/349 (34%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A II ITGS GKTTT  M+   L++  +     G+          +A+   + D
Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP---ASQVAQTATEKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P IAVIT + P H+      E   +AK  + + + +  
Sbjct: 163 VLVMELSSFQLMGIE----AFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I LN++    + L  K+ A     +  F   +  D    +      +  + ++      
Sbjct: 219 VIVLNFNQDLAKELATKTKA----RVLPFSTVEKVDGAYLEDGLLKFKGEVVMRADE--- 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +   + +   + LS F   +    R +          
Sbjct: 272 ---LGVPGSHNVENALATIAVAKVRGVENEVIKETLSAFGGVK---HRLQYVDEIQGVKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G            V  +  +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDEL------VPHITGL 372

Query: 402 SHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K  A    +    +  +             GDVV++
Sbjct: 373 KEMVILGESAPRVKRVADKAGVPYVDAADVADATKKAFYLASPGDVVLL 421


>gi|281492643|ref|YP_003354623.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376307|gb|ADA65798.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 443

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 118/351 (33%), Gaps = 44/351 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T I + G+ GKT+T  ML   +S+I  T   IG             R  
Sbjct: 93  HEFLGHFMEDFTSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDG---------TGRGI 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ +FE       E         P   ++T I   H   F GIE++ SA  +    +
Sbjct: 144 EGSEYFVFE-----SDEYERHFMPYHPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNI 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   IF   +D     L AK+       IY +G   N D++     + +  S  +   +
Sbjct: 199 KKG--IFAYGEDVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFR 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   V    G H   N L  + +   L  D+      L  F   + R    +     
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKV---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  ++A +    Q            PH   R IA   +  E+ +   
Sbjct: 307 -GETVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLD--- 362

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             H D   +  +Y     V         L D + +   V   + +  L   
Sbjct: 363 --HADTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIDLDNVSPLLDH 411


>gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
 gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
          Length = 536

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 97/493 (19%), Positives = 160/493 (32%), Gaps = 59/493 (11%)

Query: 7   FHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL +A      G     G   GI++D+R +AP E F A+ G H  G  F   A   GA
Sbjct: 17  LADLARAHGLRLTGPAAGAGEALGITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDV--------------LGALNKLAVAARLRSKATII 111
             V+ +    A+  +  IPV  V DV              + A     V  R   +    
Sbjct: 77  SAVLTDASGAAAAEAAGIPVL-VADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTF 135

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------- 157
           A+TG+ GKTTT  +L   L  + +    IG+    IG  +  AR+               
Sbjct: 136 AVTGTNGKTTTSFLLAHLLGLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDLHALLAHM 195

Query: 158 --VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               V   + E+    L   R     VR  +A  T +   HL     +E   +AKA +F 
Sbjct: 196 VEAGVTDLVMEVSSHALELHR--VDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFT 253

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKS-KNADFQLRKWKQCSEQSWM 272
                    ++ DD +   L   + A GI   T+ + G+    A + +R     ++    
Sbjct: 254 PARAR-RAVVSVDDEWGRRLAGDARAAGIDVATLATRGEHAAAAAWTVRDVVAGADAMSF 312

Query: 273 EVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +   G  ++       G     N  + L             ++AL+             
Sbjct: 313 TLTGPGDVALTTSLTMPGAFNVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRM 372

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +      ++D ++N +   +      L+++     GR   VLG   E     +    +
Sbjct: 373 EVVGAEPRCVVDFAHNTDAVGI-----ALAELRATTSGRLHVVLGATGERDRGKRPAMGE 427

Query: 392 LAEVLSLYNI---------------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            A + +   I               + V            A  R + V            
Sbjct: 428 AAVLGADAVIVTDDDPHDEDPAQVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAIAA 487

Query: 437 IQSSLVDGDVVVV 449
             +     D V+V
Sbjct: 488 AVAGAAPEDTVLV 500


>gi|29653489|ref|NP_819181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161830535|ref|YP_001596099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii RSA 331]
 gi|212213341|ref|YP_002304277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuG_Q212]
 gi|62900583|sp|Q83F20|MURD_COXBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082877|sp|A9NA40|MURD_COXBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711904|sp|B6J2Q5|MURD_COXB2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29540751|gb|AAO89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161762402|gb|ABX78044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 331]
 gi|212011751|gb|ACJ19132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuG_Q212]
          Length = 442

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 136/348 (39%), Gaps = 36/348 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IIAITGS GKTT   ++ + + +  +  +  G+    +     L ++  + D+ 
Sbjct: 102 RNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPV-----LEQITPEPDYY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +R   A I  I+  H++ ++ +++   AK  I+         
Sbjct: 157 VLELSSFQL----ETTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRIY---TDCFIP 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N D+   E+ +   H    K   SFG +  ADF L +           +  QGK +  
Sbjct: 210 IVNADEP--EIWR---HLPFNKKPLSFGLNNAADFSLAE-----HNQKTSIAYQGKILMP 259

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +        H  QN L  L + +     ++  +  L  F    G   R +          
Sbjct: 260 IQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFS---GIRHRCQWVRKYKEIDY 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + +AAI  L Q +   +G+ I + G   +  + S      L +V+  Y +
Sbjct: 317 YNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFSP-----LKDVVKRY-V 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     L+  L     + ++++M+        +   GD+V++
Sbjct: 368 KQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL 415


>gi|154706319|ref|YP_001425285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii Dugway 5J108-111]
 gi|189082876|sp|A9KER6|MURD_COXBN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154355605|gb|ABS77067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           Dugway 5J108-111]
          Length = 442

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 136/348 (39%), Gaps = 36/348 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IIAITGS GKTT   ++ + + +  +  +  G+    +     L ++  + D+ 
Sbjct: 102 RNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPV-----LEQITPEPDYY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +R   A I  I+  H++ ++ +++   AK  I+         
Sbjct: 157 VLELSSFQL----ETTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRIY---TDCFIP 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N D+   E+ +   H    K   SFG +  ADF L +           +  QGK +  
Sbjct: 210 IVNADEP--EIWR---HLPFNKKPLSFGLNNAADFSLAE-----HNQKTSIAYQGKILMP 259

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +        H  QN L  L + +     ++  +  L  F    G   R +          
Sbjct: 260 IQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFS---GIRHRCQWVRKYKEIDY 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + +AAI  L Q +   +G+ I + G   +  + S      L +V+  Y +
Sbjct: 317 YNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFSP-----LKDVVKRY-V 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     L+  L     + ++++M+        +   GD+V++
Sbjct: 368 KQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL 415


>gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 481

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 156/459 (33%), Gaps = 69/459 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR + P   FFA KG  +   +F+ +AVQ G    V   D       + IP  
Sbjct: 35  FDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVQAGLSFYVAEKDY-----QVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++    A     + K  ++A TG+ GKTT        L    K  A + + N
Sbjct: 88  IVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQSHK-PAMLSTMN 146

Query: 145 NHIGV------------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +               L L RM  +         I E+       +    + +   + 
Sbjct: 147 TTLDGKNFFKSTLTTPESLDLFRMMAEAVANGMTHLIMEVSSQAY--LTKRVYGLTFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  +   LE +  + +N   + F  +  +       
Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYHKRLL---LENSRAVIVNSGMNHFGFVAEEVA----- 256

Query: 246 TIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                   K+ DF  +  +      S    + +GK + +     IG     N +      
Sbjct: 257 -------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLSC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A ++   + ++        G+        G    +D  Y  N  S+   + V   +
Sbjct: 310 LRLGASLEDIKQGIAQ---TSVPGRMEILTQANGAKVFVD--YAHNGDSLDKLLQV---V 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
           + H +G+   +LG     GE  +    D   VL+ Y    V LS         LA+   +
Sbjct: 362 TDHQKGKISLILGAPGNKGESRR---KDFGHVLNTYPEVDVTLSADDPNKEDPLAICQEI 418

Query: 419 PRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
              I        +  + +   +  +    D VV+  K +
Sbjct: 419 ASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGA 457


>gi|225549420|ref|ZP_03770392.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
 gi|225370048|gb|EEG99489.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
          Length = 468

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 148/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I+GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGISGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNF-----SPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis FAM18]
 gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis FAM18]
          Length = 445

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATKD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGKKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +     D+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|161723236|ref|NP_268197.2| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|25014077|sp|Q9CE10|MURC_LACLA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|326407576|gb|ADZ64647.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 443

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 118/351 (33%), Gaps = 44/351 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T I + G+ GKT+T  ML   +S+I  T   IG             R  
Sbjct: 93  HEFLGHFMEDFTSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDG---------TGRGI 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ +FE       E         P   ++T I   H   F GIE++ SA  +    +
Sbjct: 144 EGSEYFVFE-----SDEYERHFMPYHPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNI 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   IF   +D     L AK+       IY +G   N D++     + +  S  +   +
Sbjct: 199 KKG--IFAYGEDVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFR 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   V    G H   N L  + +   L  D+      L  F   + R    +     
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKV---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  ++A +    Q            PH   R IA   +  E+ +   
Sbjct: 307 -GETVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLD--- 362

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             H D   +  +Y     V         L D + +   V   + +  L   
Sbjct: 363 --HADTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIDLDNVSPLLDH 411


>gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240355]
          Length = 445

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDTFCCAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     +  D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRHDLDGCGLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|145220556|ref|YP_001131265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189082914|sp|A4SH04|MURD_PROVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145206720|gb|ABP37763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 465

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 126/352 (35%), Gaps = 31/352 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           +A I+ ITG+ GKTTT  ++    ++             +IGVP + +     + D  + 
Sbjct: 107 RARIVGITGTDGKTTTATLVHDIAAAEGSLRGNRAWGVGNIGVPFSAMVGEMEEGDTAVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L          RP ++V+T I P HL  +   +E  A+AK  I    ++  T+ 
Sbjct: 167 ELSSYQL----ERCVTFRPDVSVLTNITPDHLGRYDGSMERYAAAKFRICMNQKEGDTLI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQ 277
            N DDS  E           +  +S  +  +A         +  +     +     V   
Sbjct: 223 YNADDSLLEEHFGGGAFPFRRVPFSLEEPPSAGVMHDGVFLRDGEIVVARDGGERRVART 282

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              ++      G H   N L  + +   L          L  F    G   R +     G
Sbjct: 283 DGFLKNSFR--GRHNIYNALAAVAVSEALGIGDGVVRDGLGAFQ---GVRHRQQFVRRLG 337

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S   N  +M+ A+  +       EG+ + + G     G    + +  +  +++
Sbjct: 338 GADWINDSKATNVNAMRQALEAV-------EGKIVLIAG-----GRDKGNDYRPVLPLVA 385

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  +   G     L +A      +  + +++G     +++  +G  V+ 
Sbjct: 386 E-KVELLLSIGESRALLAEAFKGVARIQEAASLEGAVSLARAAAGEGWTVLF 436


>gi|223889325|ref|ZP_03623912.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
 gi|223885246|gb|EEF56349.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
          Length = 468

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNF-----SPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGRSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNREDFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|320547396|ref|ZP_08041684.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equinus ATCC
           9812]
 gi|320447941|gb|EFW88696.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equinus ATCC
           9812]
          Length = 443

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 131/397 (32%), Gaps = 53/397 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V +                + T   + G+ GKT+T  ++   L +I  T   IG    
Sbjct: 81  YAVKNGFKFKRYHEFLGDFMRQFTSFGVAGAHGKTSTTGLMAHVLKNITDTSYLIGDG-- 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    R   + ++ +FE       E +       P  ++IT I   H   F  I++
Sbjct: 139 -------TGRGSANSNYFVFE-----SDEYQRHFMPYHPEYSIITNIDFDHPDYFKSIDD 186

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  A  +  + ++K   +FL  DD +   + + +       IY +G +   DF      +
Sbjct: 187 VFDAFNDYAKQVQK--ALFLFGDDPYLRKITSDAA------IYYYGFNDTDDFIAYDVVR 238

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+   + +        G H   N    +  + +   D++   + +  F   +
Sbjct: 239 TTNGSAFKVKHGDEELGTFHLPAFGRHNILNATAVIANLYVAGIDMELVAEHMKTFAGVK 298

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAV 374
               R          T+ID+ +  +P  + A +    Q            PH   R IA+
Sbjct: 299 ----RRFTEKVINNTTIIDD-FAHHPTEIIATLDAARQKYPSKEIIAVFQPHTFTRTIAL 353

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           L       E +Q+ +   A  L+    +   V      V  L   + +S  V   + +  
Sbjct: 354 L------DEFAQALNQADAVYLAPIYGSAREVDHGDVKVEDLAAKIKKSAKVISLDNVSP 407

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGF-YRLINLLLEEF 468
           L         D  V +   +       R    LL   
Sbjct: 408 LLDH------DNGVYIFMGAGDIQMYERSFEELLARL 438


>gi|218249332|ref|YP_002375315.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226321282|ref|ZP_03796810.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
 gi|218164520|gb|ACK74581.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226233314|gb|EEH32065.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
          Length = 468

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E       E +       P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVE-----TCEYKNHFLNFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|294648998|ref|ZP_06726446.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825133|gb|EFF83888.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 452

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 131/393 (33%), Gaps = 54/393 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG                  IPV     +L          R  +   I+AITGS
Sbjct: 82  IQQALEKG------------------IPVVSDIQLL----------RRATDVPIVAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   +  +      K  A  G+          L  +    +  + EL    L    
Sbjct: 114 NAKSTVTTLFGLMAKDAGKKVAVGGNLGRP-----ALDLLKDQPELIVLELSSFQL---- 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T  +   +AV+  ++  HL     +     AK  IF+G++K   +  N DDS    L 
Sbjct: 165 ETTSHLNAEVAVLLNMSEDHLDRHGDMLGYHKAKHRIFQGVKK---VVYNRDDSLSRPL- 220

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                  +  + SFG +     Q    ++     W+    +        +  G H   N 
Sbjct: 221 ----VPDVTPMQSFGLNAPDMNQYGVLREADGSMWLARGRERLIKTSDLYIQGMHNVANA 276

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +     + ++ L  F   E R +  +           ++S   N  +  AA
Sbjct: 277 LACLALGEAIGLPTQSMLETLQQFKGLEHRCEYVQTV---DQVRYYNDSKGTNVGATLAA 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L        G+   +LG   + G+  +     + + +       V L G     ++ 
Sbjct: 334 IEGLGAAIEAKHGKLALILGGQGK-GQDFKPLRNAIQKYVKT-----VILIGEDAAMIEQ 387

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AL  +  + ++ ++         +    DVV++
Sbjct: 388 ALHNTTQIQHASSLKQAVDIAHQATQAEDVVLL 420


>gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 256

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 24/229 (10%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR +AP  AF A+ G   DG  FI+ A  +GA + + +  
Sbjct: 34  LEAQLEGPAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIVDAAGRGAAVAIASQP 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +       SIPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  V-----DASIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177
               A IG+                  P++L ++  +     V     E     L + R 
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFL 225
               V+   A  T +   H+     +E   +AK  +F+ L   G    +
Sbjct: 209 --DGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLPKGAPAVI 255


>gi|317133419|ref|YP_004092733.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
 gi|315471398|gb|ADU28002.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
          Length = 454

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 131/398 (32%), Gaps = 47/398 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   + +  + ++P+F   ++LG L++              A++G+ GKTTT  M
Sbjct: 76  AAVHEDNPEIQAARAKNLPLFSRAELLGLLSRHYA--------DTFAVSGTHGKTTTTSM 127

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           LT  L    K   A IG     IG              G  +L +    E +     + P
Sbjct: 128 LTQILMMAGKDPTAVIGGKLPFIGGS---------SRIGATDLMVCEACEFQDSFLTLHP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++VI  I   HL  F  +E +    A           +  N DD+    L+A  +A   
Sbjct: 179 AVSVILNIDNDHLEYFKSMENLIEHFARFAAQ--TGNALIYNGDDAN--TLRAVRNASIH 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
           K   +FG     D+              ++    ++M  +     G H   N L      
Sbjct: 235 K--ITFGLDHANDYSADNIGVVDRHLTFDLLRGEQTMAHITLKVPGRHNILNALAACAAA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +          + L+ F    G G+R+         T + + Y  +P  + A +     +
Sbjct: 293 AYAGVPDAVIEEGLNAFS---GAGRRFEVLGRTANGTTVADDYAHHPTELSATLRAAKDL 349

Query: 364 SPHGEGRRIAVL-------GDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA 413
                    AV          M  + + + +    +A+ + L  I     V   G     
Sbjct: 350 GYAA---VWAVFQPFTFSRTAML-LDDFADAL--RIADKVVLSPIMGSREVNTYGIRSED 403

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +P S+        D +  ++       D+V+   
Sbjct: 404 LAAKVPGSV---CLPDFDAIAAYVSEHAGPHDLVLTLG 438


>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
 gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
          Length = 440

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 130/343 (37%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 107 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF   E   T  +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAE---TAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG    A F      Q   + ++  + +         
Sbjct: 215 ADD--TQTFPDHAAHL---QVVTFGVEHAAQF---SVAQHQGREYLFARDEAVMACAELS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 267 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 324 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 373 FGVDGDKF---MPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|12725089|gb|AAK06138.1|AE006433_8 UDP-N-acetylmuramate-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 457

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 118/351 (33%), Gaps = 44/351 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T I + G+ GKT+T  ML   +S+I  T   IG             R  
Sbjct: 107 HEFLGHFMEDFTSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDG---------TGRGI 157

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ +FE       E         P   ++T I   H   F GIE++ SA  +    +
Sbjct: 158 EGSEYFVFE-----SDEYERHFMPYHPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNI 212

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   IF   +D     L AK+       IY +G   N D++     + +  S  +   +
Sbjct: 213 KKG--IFAYGEDVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFR 264

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   V    G H   N L  + +   L  D+      L  F   + R    +     
Sbjct: 265 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKV---- 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  ++A +    Q            PH   R IA   +  E+ +   
Sbjct: 321 -GETVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLD--- 376

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             H D   +  +Y     V         L D + +   V   + +  L   
Sbjct: 377 --HADTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIDLDNVSPLLDH 425


>gi|195941973|ref|ZP_03087355.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi 80a]
 gi|224532449|ref|ZP_03673075.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512621|gb|EEF82996.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 468

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNF-----SPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|312149248|gb|ADQ29319.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi N40]
          Length = 468

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNF-----SPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGRSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
 gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
          Length = 422

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 124/372 (33%), Gaps = 39/372 (10%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             S  I    V   +  + +L +A R   + T IAITG+ GK+TT  +  + L S     
Sbjct: 55  PPSHPIWQEAVRKGIEVIGELELAWRF-FEGTAIAITGTDGKSTTTRLSYLILRSYFSHV 113

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+    IGVP +   M       + E+       ++      RPH+      +  HL
Sbjct: 114 EEGGN----IGVPFSYLVMKNPKALAVLEVSSFQGKTLKTF----RPHVGAFLNFSEDHL 165

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                + +   +K  IF        I LN          + +          FG    A 
Sbjct: 166 DWHPDLRDYLWSKYNIFSRQTPEDWILLNGTQKVTRDTPSPARK------VFFGDGCEAH 219

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +       SE+    V+            IG H   N L+   I  I+    D      
Sbjct: 220 VK-EDGAYWSEEKLFSVE--------DIKLIGKHNLYNALVACVIGRIMGVPTDRMK--- 267

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            V     G   R     + G   + ++S +  P +++AA+  +       +GR I + G 
Sbjct: 268 EVLRDFRGLPHRLELVGDFGGVLVYNDSKSTTPNALQAALGSM------PDGRVILIAG- 320

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
               G+   +    L   L    + H  L G     + DA      V  + ++D      
Sbjct: 321 ----GKDKGASFEHLC-PLVTQKVKHAVLIGEAKRRIADAWKGCTQVSLASSLDEAIRMA 375

Query: 438 QSSLVDGDVVVV 449
           Q     GD+++ 
Sbjct: 376 QREAKPGDILLF 387


>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
 gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
          Length = 450

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 127/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKELARKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIVVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDEIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  +  +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 504

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 141/430 (32%), Gaps = 49/430 (11%)

Query: 6   TFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  ++ + +        P    Q  V  +S +S++++    FF  KG H+    ++  A 
Sbjct: 4   TLREICRLLDERGQLKSPLLTSQASVQNLSYNSKAVSEGTLFFC-KGAHFKP-AYLEQAQ 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL---------NKLAVAARLRSKATIIA 112
             GA   V   D       L + +  V+D+  A+                      T   
Sbjct: 62  ALGAIAYVSEQDY-----GLDLYLIQVEDIRLAMPIIADFFYQAPYQAFHLTGITGTKGK 116

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--------- 163
            T +   T   ++   +L      Y    SY + +    +    P  ++           
Sbjct: 117 TTTTFYLTKILDLYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRFNHVRES 176

Query: 164 ---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLE 218
                 + +S           V   +     I+  H+S       E+   +K ++F+   
Sbjct: 177 AIDFMTMEVSSQALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLKLFDQ-- 234

Query: 219 KTGTIFLNYDDSFFELLKAKS-HALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQL 276
            +    +N D    + +  ++  +  +K I +   K + AD+  +     S+Q    +  
Sbjct: 235 -SQLAVINLDADHIDRIYQRASDSKTVKKIVTVSTKDEKADYLAKNIVSGSDQQHFVLHA 293

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E+    +G    +N L+ + I        +   KAL      EGR + Y     +
Sbjct: 294 PDFEGEIRMKMLGRFNVENALVAIAIARYYQVPYEIIKKALQAAQ-TEGRMEVYHSTDKR 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +    +  N  S++       Q+ P  +   I V G     G+ + S   DL EV 
Sbjct: 353 IHAIV---DFAHNKLSLEKLFEASRQMYP--KAHSIVVFGS---AGDKAISRRKDLGEVA 404

Query: 397 SLYNISHVWL 406
           + Y    + L
Sbjct: 405 AQY-ADEIIL 413


>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 456

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 130/372 (34%), Gaps = 37/372 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                     I+AITG+ GKTTT   +   L       A  G+    +   +      ++
Sbjct: 102 AYHLKNDAVEIVAITGTNGKTTTTAFVAEILDKSGVNTAACGNIGVPLISVID----EIE 157

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                 E+    L  IR       P +A +  I P HL     +E+   AKA+I      
Sbjct: 158 HGVVSVEVSSFQLETIREF----HPRVAAVLNITPDHLDRHGTMEQYVEAKAKILSNQGP 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQ 277
                LNY+D++   LK ++ +     +  F  ++       +   K  +     EV + 
Sbjct: 214 DDFSVLNYEDAWVRRLKTEAKS----QVIFFSTARRLPRGVYVEDGKIKARLYDDEVVIC 269

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +         G H  +N+L  +GI   L    DT    L  F     R +  R      
Sbjct: 270 PRE---NVALRGEHNLENVLCAVGIAIALGVKPDTIADTLRSFKGVRHRLEEVR---RVN 323

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   NP S   A+    +         I + G   +  + +      +   + 
Sbjct: 324 GVLYVNDSKGTNPESTIKALQAFQE-------PVILIAGGRNKGADFT------VLSRVI 370

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              + H+ L G   L +++ +      H+  +++ +      +     GDVV++  S +C
Sbjct: 371 KDKVRHLVLVGEASLLIREKVLEQGFQHIDVAKSFEEAVYRAKELARPGDVVLL--SPAC 428

Query: 456 GFYRLINLLLEE 467
             + + N   E 
Sbjct: 429 ASWDMFNSFEER 440


>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
 gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
          Length = 441

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 122/345 (35%), Gaps = 38/345 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    +IAITGS GK+T  +       +        G+        L      +D D  +
Sbjct: 107 QVDKPVIAITGSNGKSTVTDWTGQVAKATGLKVGVGGNIGVPALDLL-----TLDADLYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  + P  A    +   H+  + G+E+   AK  IF+  +      
Sbjct: 162 LELSSFQL----ETTSSLAPKAAAFLNLTEDHMDRYQGMEDYRQAKLRIFDHAQS---CI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N +D      K        K +  F  + +  F +     C    ++ +  +       
Sbjct: 215 VNAED------KQTYPDQNNKHLVEFSLTDSTQFSVID---CDGIEYLAMNGKQIIPAAE 265

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L ++S +  D++  + A        G   R +   +      +++
Sbjct: 266 LSLVGRHNVANALVVLALLSQVGVDIEKGLDA---LKSYNGLTHRCQVVADNRGIKWVND 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA++ L        G    ++G M +  + S      LA VL   ++  +
Sbjct: 323 SKATNVASTMAALAGL-----ELAGTLYLLVGGMGKGADFS-----QLAPVLDKLDL-QL 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G          P +       +M+ +  ++   +  GD+V++
Sbjct: 372 CCFGEDGDQFMSLHPSAQR---FSSMEEIIQWLSPKVTAGDMVLL 413


>gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
 gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
          Length = 445

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDAFCRAMK-----RAGREVKWFSLEHEADFWLARETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAIGLSRNELLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGIDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus uberis 0140J]
 gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus uberis 0140J]
          Length = 482

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 163/471 (34%), Gaps = 70/471 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +     FFA KG  +   D++  A+ +G    V   D       LSIP   V 
Sbjct: 38  LSYDSREVDADTLFFA-KGAQFKV-DYLKKAIDQGLQAYVSEIDY-----QLSIPAIIVS 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D+  A++   +      + K  ++A TG+ GKTT        L    K  A   + N  +
Sbjct: 91  DIKKAMSIIAMTFYGNPQEKLKLLAFTGTKGKTTAAYFAYHILKQNYK-PAMFSTMNTTL 149

Query: 148 GVP------------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          L L +M            I E+        R   + +   + V  
Sbjct: 150 DGQTFFKSQLTTPESLDLFKMMASCVSNGMTHIIMEVSSQAYLVDR--VYGLTFDVGVFL 207

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            I+P H+        E+    K  + E    +  + +N     F +L  +        ++
Sbjct: 208 NISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFNILAEQVADKD--HVF 262

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILT 307
              +S+NA          +E       + G+         IG    +N +        L 
Sbjct: 263 YGDQSENA---------LTESQAFAFSVNGQIAGHYDIQLIGRFNQENAIAAGLACQKLG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A      + ++        G+    +   G    +D  Y  N  S++  +SV   +  H 
Sbjct: 314 ASHLDIHEGIAQ---TTVPGRMEVVSHPNGAKVFVD--YAHNGDSLEKLVSV---VETHQ 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSG----FHVLALKDALPRSI 422
           +G    ++G     G   +S   D   V++ + N++ +  +          +   +   +
Sbjct: 366 KGLISLIIGS---TGNKGESRRADFGRVINNHPNLNVILTADDPNFEDPETICQEIASHV 422

Query: 423 HVHY---SETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468
           + H     +  D +   ++     GD +++  K +++   Y+++N   EE+
Sbjct: 423 NRHVSIIVDRQDAIIEGLKYCHTSGDALIIAGKGADA---YQIVNGKKEEY 470


>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 450

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|34763166|ref|ZP_00144133.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887164|gb|EAA24268.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 468

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 108/289 (37%), Gaps = 25/289 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IAI G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 96  LKRGELLAKLLNRETGIAIAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  AVIT I   HL     ++ I  +  E  
Sbjct: 146 EIKSNAKPGKSEYFIAEADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFI 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D    +   A +     K++ ++  K +NA    +  +    ++  E
Sbjct: 206 SHTQKE--AIICMDCENLKE--AITRLPKGKSVITYSIKDENASIFAKNIRITDRKTIFE 261

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H  QN L  + +        +   +AL+ F   + R      
Sbjct: 262 LYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLFD 321

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              +  +        I + Y  +P  +KA +  +  I      R +A+ 
Sbjct: 322 KELENGYGNKTKKVRIIDDYAHHPTEIKATLKAIKSIDTS---RLVAIF 367


>gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 491

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 87/488 (17%), Positives = 166/488 (34%), Gaps = 71/488 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL     H +   P+     + +  D+R +     F  +KG       F    + +
Sbjct: 7   TIQQLLN--DEHLLVSKPEVTQTFDFLHYDTRQVKANTLFV-VKGA------FRPEYLTQ 57

Query: 64  --GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
             G   +V  T +      +S+P + V DV  AL+ L++A     +    I A TG+ GK
Sbjct: 58  TDGVSGLVTETRL-----DVSLPQWQVTDVQKALSILSMAFFGYPQHDLWIGAFTGTKGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL------------------ARMPVDVD 161
           TT   M    L +    +  + S  + I    +                    R  VD  
Sbjct: 113 TTAAYMAYNILKNTTDKHVALFSTVDRITGNNSEDKKKSDLTTPESYELFKDMRRSVDNG 172

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219
                + +S    ++   + +R ++     I+P H+        E+  + K  +F+    
Sbjct: 173 MTHLVMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLAHKLMLFDH--- 229

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEV---Q 275
           +  + +N +      +   +       +Y++  + K   +     +    +S + V    
Sbjct: 230 SDQVIINAESDHLSEIMTHAKQTHDL-VYTYSLAGKGGAYTYTSQESAIHESRLTVLPSD 288

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L+  +     +  G     N +  L + ++  A  D  I+           G+     ++
Sbjct: 289 LKALAGHYRLNLPGDFNESNAMAALIMSALAGASHDNMIRG---LDEVFIPGRMLSLPIS 345

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +D  Y  N ASM A +       P   GR + V+G     G    S   D   V
Sbjct: 346 GHGVTFVD--YAHNYASMHALLRFAQNQYPE--GRVLVVVGSP---GNKGVSRRADFGRV 398

Query: 396 LSLYNISHVWLSGFH------VLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +S      V+L+         ++  K+        ++ VH+            S   + D
Sbjct: 399 VSEL-ADVVYLTADDPQFESPMVIAKEIASHITSETLEVHFEMNRIQAINQAISQATEKD 457

Query: 446 VVVV--KS 451
           +V+V  K 
Sbjct: 458 IVIVAGKG 465


>gi|291544049|emb|CBL17158.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. 18P13]
          Length = 471

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 143/430 (33%), Gaps = 60/430 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +  +  +PV    ++LG +      A        I I G+ GKTTT  M
Sbjct: 76  AAIMADNPELIAAKASGVPVLERSELLGIVTSKYDNA--------ICICGTHGKTTTTSM 127

Query: 126 LTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
               L +      A IG     IG      +  + V      +              + P
Sbjct: 128 AAQILFTAGVDLSAFIGGKLPCIGGSGRAGKSDIMVCESCEFVDTF---------LKLYP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVI  +   HL  F  +E +  +  +  E  + + T+  N +DS           +  
Sbjct: 179 DVAVILNVDADHLDYFGTLENVIKSFHKFAE--KASRTVIYNGNDSNTRK---AVEGISG 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
           K + +FG + + D+   + +  S  ++        K M E+V H  G H   N +  +  
Sbjct: 234 KEMITFGNTPDCDYYAAQVQHVSGMETHFIAMHHDKPMGEIVLHVAGIHNVLNAMAAIAA 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D   K L  F    G G+R+      G  T++D+ Y  +PA +   ++   +
Sbjct: 294 ADHAGVPFDAIQKGLCEF---RGAGRRFEKVAQVGGITVVDD-YAHHPAELTVTLNAAKE 349

Query: 363 I---------SPHGEGRRIAVLGDMCE-------------MGELSQSFHIDLAEVLSLYN 400
           +          P    R   +L D  +             MG   ++ +      L+   
Sbjct: 350 MGYRHVWAVFQPFTFSRTAMLLDDFAKALSIADTAVLTDIMGSREKNTYHIFTRNLAEKI 409

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              VW         +D              D +  +I      GD+V+         Y++
Sbjct: 410 PGCVWFP-------QDETEEPNDTRKYHNFDQVCDYICKHAQPGDLVITLGCGDV--YKI 460

Query: 461 INLLLEEFPA 470
              L +E P 
Sbjct: 461 SRRLAKELPQ 470


>gi|295099659|emb|CBK88748.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium cylindroides
           T2-87]
          Length = 435

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 31/286 (10%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            +           L  +   I + G+ GK+TT  +L   LS   KT   IG  + +    
Sbjct: 84  TVKTYYYNEYLGILLKRYNSICVAGTHGKSTTTGILGQVLSHFGKTGFLIGDGHGY---- 139

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                MP + D  + E        + +      P  A+IT I   H+  +  +++   A 
Sbjct: 140 -----MPKNADNFVLESCEFQRHFLAY-----SPDYAIITNIELDHVDYYKDMDDYLDAF 189

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                 ++K   IF   DD + + L  K          ++G ++  D++    +  S   
Sbjct: 190 QSFIHQIKKKAVIF--GDDPYLKDLDYKV------PCVTYGLNEGNDYRAINVEMGSYGM 241

Query: 271 WMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +      K++ V    +G    Q+ L    +   +  +    ++        +G  +R
Sbjct: 242 HFDCVYDNDKNIHVELPEVGIPFLQDALGCFALCHEMGMEASDIVEG---LKEYQGIARR 298

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +     +    +  + Y  +P +++  I    +      G+++  L
Sbjct: 299 FVVEEVKDSVCI--DDYAHHPTAIRYMIDAARK---KYPGKKVVAL 339


>gi|153207157|ref|ZP_01945936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918426|ref|ZP_02218512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212219390|ref|YP_002306177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuK_Q154]
 gi|226711903|sp|B6J5K6|MURD_COXB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120576818|gb|EAX33442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917932|gb|EDR36536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212013652|gb|ACJ21032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuK_Q154]
          Length = 442

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 135/348 (38%), Gaps = 36/348 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IIAITGS GKTT   ++ + + +  +  +  G+    +     L ++  + D+ 
Sbjct: 102 RNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPV-----LEQITPEPDYY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +R   A I  I+  H++ ++ +++   AK  I+         
Sbjct: 157 VLELSSFQL----ETTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRIY---TDCFIP 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N D+   E+     H    K   SFG +  ADF L +           +  QGK +  
Sbjct: 210 IVNADEP--EIW---CHLPFNKKPLSFGLNNAADFSLAE-----HNQKTSIAYQGKILMP 259

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +        H  QN L  L + +     ++  +  L  F    G   R +          
Sbjct: 260 IQELKLNARHHLQNALAALALGTAAKIPIENMLHLLRDFS---GIRHRCQWVRKYKEIDY 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + +AAI  L Q +   +G+ I + G   +  + S      L +V+  Y +
Sbjct: 317 YNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFSP-----LKDVVKRY-V 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     L+  L     + ++++M+        +   GD+V++
Sbjct: 368 KQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL 415


>gi|84686334|ref|ZP_01014228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665517|gb|EAQ11993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2654]
          Length = 466

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 114/356 (32%), Gaps = 36/356 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
               +     ++A+TGS GK+TT  ++   L    K     G+    +         P+D
Sbjct: 112 AWDEMDQPPRVVAVTGSNGKSTTSALIHHILKVAGKPAQLAGNIGRGVLDI----EPPID 167

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  + EL        R LT    P +AV T ++P HL    G     +AK  +F     
Sbjct: 168 GEVIVLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHGGPGGYFAAKRRLFAEGGP 223

Query: 220 TGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                +  D+     L  + +   G   +      +        W   + + ++    +G
Sbjct: 224 D-RAVVGVDEPEGLFLAGQLAMGPGDDRVIRVSVDEK--LTGPGWLVYARKGFLSETRKG 280

Query: 279 K-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           K      +  +    G H  QN      +   L        +A   FH   G   R +  
Sbjct: 281 KQVGSIDLRTIASLPGTHNHQNACCAYAVCRTLGLSPKVIEQA---FHSFAGLPHRSQLV 337

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    +++S   N  +   A+     I       R  V G   E G    +      
Sbjct: 338 AEAGGVRYVNDSKATNVDAALMALLAFRNI-------RWIVGGLQKEGGLSGLAE----- 385

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L N++  ++ G    A    L  ++      TM+       +    GD V++
Sbjct: 386 ---GLPNVAKAYVIGREAEAFARDL-GAVEAQVCTTMEAAVAAAMADAQSGDTVLL 437


>gi|15595162|ref|NP_212951.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi B31]
 gi|216264426|ref|ZP_03436418.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
 gi|3914076|sp|O51757|MURC_BORBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2688761|gb|AAC67166.1| UDP-N-acetylmuramate--alanine ligase (murC) [Borrelia burgdorferi
           B31]
 gi|215980899|gb|EEC21706.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
          Length = 468

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    + LG L++             I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I    + +      + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVI--VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNF-----SPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-SIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           DFQ+      SE            + V    + +H   N    L  +++          D
Sbjct: 255 DFQISNIAVRSEYFCFSFL---GLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + AIK ++      G  +R      +     +D+ Y  +P  +K   + L  I    + 
Sbjct: 312 FEEAIKRIA--KNYSGIKRRVEVVKEENGVIYMDD-YAHHPREIK---NTLFGIKNFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS  +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
 gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
          Length = 481

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 152/458 (33%), Gaps = 67/458 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR + P   FFA KG  +   +F+ +AVQ G    V   D       + IP  
Sbjct: 35  FDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVQAGLSFYVAEKDY-----QVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY------- 137
            V D+  A++    A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  IVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQSHKPAMLSTMNT 147

Query: 138 ----ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                     N      L L RM  +         I E+       +    + +   + V
Sbjct: 148 TLDGKNFFKSNLTTPESLDLFRMMAEAVDNGMTHLIMEVSSQAY--LTKRVYGLIFDVGV 205

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  +   LE +  + +N   + F  +  +        
Sbjct: 206 FLNISPDHIGPIEHPTFEDYFYHKRLL---LENSRAVIVNSGMNHFGFVAEEVA------ 256

Query: 247 IYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K+ DF  +  +      S    + +GK + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLSCL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   + ++        G+        G    +D  Y  N  S+   + V   ++
Sbjct: 311 RLGASLEDIKQGIAQ---TSVPGRMEILTQANGAKVFVD--YAHNGDSLDKLLQV---VT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
            H +G+   +LG     GE  +    D   VL+ Y    V LS         LA+   + 
Sbjct: 363 DHQKGKISLILGAPGNKGESRR---KDFGHVLNTYPEVDVTLSADDPNKEDPLAICQEIA 419

Query: 420 RSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
             I        +  + +   +  +    D VV+  K +
Sbjct: 420 SHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGA 457


>gi|203288244|ref|YP_002223259.1| UDP-N-acetylmuramate--alanine ligase [Borrelia recurrentis A1]
 gi|201085464|gb|ACH95038.1| UDP-N-acetylmuramate--alanine ligase [Borrelia recurrentis A1]
          Length = 486

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 139/396 (35%), Gaps = 45/396 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L IPV    +V+G ++K             I + GS GKTTT       L  +  +
Sbjct: 110 EAYELGIPVLSYPEVIGEISKKYY---------SIGVAGSHGKTTT----AAFLGILFHS 156

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                +    I               G   + ++   E +       P I V+T I   H
Sbjct: 157 LGLQPNL---ILGSSVKNLEDKSSLVGESNVFIAETCEYKGHFLSFSPDIIVLTNIDYEH 213

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   EE+     +    L+K G + +N D+     +K K     I+ ++S G +  +
Sbjct: 214 VDFFKNYEEVEDIFLQYVNNLKKNGILIINADEINLFNIKNKIIRKDIR-VFSVGFNSLS 272

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           DF++  ++        +      S+++       H   N  + L  + +   +    +  
Sbjct: 273 DFKIEHFEIGDGFLKFDFL---GSIDIRLKTPLIHNVLNFSIALLALKLFLEEHKKLVWN 329

Query: 317 L-----SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                  V     G  +R    + +     +D+ Y  +P  +++    L  +    +GRR
Sbjct: 330 FDERIKIVARKYMGIKRRMEFIMEKDGVIYLDD-YAHHPKEIES---TLLGLKKFYDGRR 385

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----------- 420
           I VL  M      ++    +   VLS  N+  + L   ++   +D  P+           
Sbjct: 386 I-VLDFMPHTFTRTKVLFDEFVRVLS--NVDVLILHNIYLSVREDFDPKRLSRDLFLSLR 442

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             + +V++ E +     FI+  L   D+ V   +  
Sbjct: 443 DLNQNVYFFEEVGDSVDFIKGLLKRNDLFVTMGAGD 478


>gi|258647731|ref|ZP_05735200.1| UDP-N-acetylmuramate--alanine ligase [Prevotella tannerae ATCC
           51259]
 gi|260852574|gb|EEX72443.1| UDP-N-acetylmuramate--alanine ligase [Prevotella tannerae ATCC
           51259]
          Length = 460

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 135/384 (35%), Gaps = 37/384 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   L  +   + + G+ GKTTT  M    L        C            T   +
Sbjct: 99  RAEVLGYLTRQMKGLCVAGTHGKTTTTAMAAHLLHES--HVGCNAFLGGIAKNYATNYLL 156

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D DF + E       E     H ++P+ +VIT+  P HL  +   E    +       
Sbjct: 157 DNDSDFVVIEA-----DEFDRSFHHLQPYASVITSTDPDHLDIYGTKEAYLESFTHYTSL 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G + +       + LK K         + +G+    DF     +    +   ++  
Sbjct: 212 IRPDGALIV------HKNLKFKEAPPTGTRRFDYGRDAG-DFHAENIRIGGGRVCFDLIS 264

Query: 277 Q-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G   E+          +N +  + +  I  A  D   + +  F   +   +R+   + 
Sbjct: 265 PLGNISEIELGVPVSINIENGIAAIALAQIAGATPDEIREGMKTFQGVD---RRFDFKMK 321

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                L+ + Y  +PA ++ +I  + ++    +GRRI  +     +   ++ F+ + AE 
Sbjct: 322 SDKVVLLSD-YAHHPAEVRQSILSVREV---FDGRRITGIFQ-PHLYTRTRDFYREFAES 376

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                   +L +Y    + + G     + D L   +  H  +    L   ++    + DV
Sbjct: 377 LSLLDEVILLDIYPARELPIEGVSSKLIYDHLRADMKKHLCD-KSALLPLLKQE--ETDV 433

Query: 447 VVVKSSNSC-GF-YRLINLLLEEF 468
           V+V  +        ++  +L E++
Sbjct: 434 VMVLGAGDVDAMVPQIAQMLKEKY 457


>gi|254520514|ref|ZP_05132570.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
 gi|226914263|gb|EEH99464.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 138/414 (33%), Gaps = 46/414 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    + LG + K             +AI+G+ GKTT   M
Sbjct: 77  AAIPSDNPEIIEAKDKNIDLMDRAEFLGLIMKGHKYN--------VAISGTHGKTTCTSM 128

Query: 126 LTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+   L +       +G   + I     +            E  ++   E +       P
Sbjct: 129 LSHVTLKADLDPTILVGGELDVIDGNFKIGNS---------EYFITEACEYKESFLKFYP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +I VI  I   HL  +  +  I     +    +   G +    +D     +  K+     
Sbjct: 180 YIGVILNIDADHLDYYRDLNHIKETFEKFSNIIPSDGYLIGYCEDENVNEILNKAKC--- 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               S+G +K  D +       ++   S+   +   +  +V  +  G H   N L T+ +
Sbjct: 237 -NTISYGINKG-DVRATNISFDNKGRASFTVCKDNDELFDVTLNTTGKHNILNALSTICV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-- 360
             I      + I+        +G  KR+         T+ID+ Y  +P  +KA +     
Sbjct: 295 GLIFNIPYTSIIEG---LRECKGAHKRFEYKGEFNGATIIDD-YAHHPVEIKATLDTATI 350

Query: 361 -------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                  +   PH   R   +  D  E              ++ +Y          +   
Sbjct: 351 IPHKNIYAVFQPHTYTRTKTLFEDFTECFSEVDEL-----LLMDIYAAREKDTGIVNSEQ 405

Query: 414 LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L DA+  + I      + +    ++++ + + D+++   +      ++ +++L+
Sbjct: 406 LGDAIRAKGIKCTNIHSHEQAANYLKNVVSNDDIILTIGAGDV--VKVADIILK 457


>gi|91762846|ref|ZP_01264811.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718648|gb|EAS85298.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 464

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I +TGS GKTTT  +L    S  K     I G   N I     L +     D+ I E   
Sbjct: 111 IVVTGSHGKTTTTSLLASIFSKTKLDPTIINGGVLNAIKNSAKLGK----SDWCILEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    I      V P  +++T I   H+  ++ ++++     +    +   G  F+  DD
Sbjct: 167 SDGSFIH-----VPPTYSIVTNIDREHMDFYNSMKDLKELFIKFINKVPSFGKSFICIDD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKS----MEV 283
              + L +K   L +K  Y++G    ++F ++  KQ  E S  +  + L GK      ++
Sbjct: 222 KNNKDLLSK---LKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPGKKNLTIRKI 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  +N    + +   +    +   K L  F   + R  +        F+    
Sbjct: 279 KLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFTHRETNFY---- 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-----IDLAEVLSL 398
           + Y  +P  ++  ++ +       E   I     +  + +L + F       D+  +  +
Sbjct: 335 DDYAHHPTEIREVLNGVRAAYKKEEVICIFQPHRISRLKDLKKEFSLSFKKADVVILCPI 394

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSN--S 454
           Y        GF        + ++  V     E    L  FI++++    +VV   +   S
Sbjct: 395 YTAGEKIKLGFKYNNFAKDIIKNSKVRLFMVEDQYQLAKFIKNTIFGKKIVVGMGAGTIS 454

Query: 455 CGFYRLINLL 464
               +L  L+
Sbjct: 455 AWMRQLPELI 464


>gi|255320976|ref|ZP_05362149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262379934|ref|ZP_06073089.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
 gi|255301940|gb|EET81184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262298128|gb|EEY86042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
          Length = 448

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 143/394 (36%), Gaps = 56/394 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+ KG                  IPV G   +L          R  ++  I+AITGS
Sbjct: 82  IQQAIAKG------------------IPVVGDIQLL----------RRATEVPIVAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   ++ +      K  A  G+          L  +    +  I EL    L    
Sbjct: 114 NAKSTVTTLIGLMAKEAGKKVAVGGNLGRP-----ALDLLKDQPELIILELSSFQL---- 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T L+   +AV+  ++  HL     +    +AK  IF+G++K   +  N DD+    L 
Sbjct: 165 ETTSLLNAEVAVVLNMSEDHLDRHGDMLGYHAAKHRIFQGVKK---VVFNRDDALSRPLV 221

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295
             +       + SFG +   D       + ++ +    + + + ++     I G H   N
Sbjct: 222 PDA-----VPVQSFGLNA-PDMNQYGVLRDTDGTLWLARGRERLLKSTEMYIQGTHNIAN 275

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +   +   +++ ++ L  F   +G   R             ++S   N  +  A
Sbjct: 276 ALACLALGEAIGLPLNSMLETLKSF---KGLAHRCEYVDTVNNVRYYNDSKGTNIGATLA 332

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI  L       +G+ + +LG   + G+  ++    + + +       V L G   L ++
Sbjct: 333 AIEGLGAAIAPRKGKVVVILGGQGK-GQDFKALRAAVQQYVKT-----VVLIGEDALKIE 386

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  S  +  + T+        +     DVV++
Sbjct: 387 QSIEGSTEILKAATLQEAVQLCHAKADAEDVVLL 420


>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
 gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
          Length = 445

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 118/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGDEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATVAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALKDKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|118595640|sp|Q2IG29|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 462

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 132/401 (32%), Gaps = 33/401 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A   GA LVV +  +  +   +          +    ++ +AAR      I+ 
Sbjct: 62  GHD---AADFTGADLVVASPGVPLANPEI---QAARRRGVPVWGEVELAARFLGGLPIVG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GK+TT  +    L+  ++T+  +G         L L+  P      + EL    L
Sbjct: 116 ITGTNGKSTTTALTGALLARHRRTF--VGGNLGTPLSELVLSGEPAAA--AVVELSSFQL 171

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             I       R  +A +  + P HL  +  ++  A+AKA +F   E       N  D   
Sbjct: 172 EGIERF----RARVAAVLNVTPDHLDRYPDVDAYAAAKARLFATQEPDDVAVANARDP-- 225

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGI 288
             L     + G    + FG    A  +    +     + +    +G++ E          
Sbjct: 226 RALAMAGASRGDLHTFGFGAPVPASARDEGGEPGPGGTAIWYTPRGRAPERYQLHNRALR 285

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N +  +    ++    +     L  F    G   R            +++S   
Sbjct: 286 GRHNRENAMAAVLCARLMGVPGEAVQAGLDAF---PGLHHRLELVAEGRGVEWVNDSKAT 342

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S    ++     +P    R + ++G   +    +          L    +  +   G
Sbjct: 343 NVDSTFVGLAAFPAGAP----RVVLIMGGRGKKAPYAP------LRPLFGGRVKALLTIG 392

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               A++  L           + G           GDVV++
Sbjct: 393 EDAPAIERELGDLAPTEPCGDLPGAVRRAAVLSGPGDVVLL 433


>gi|83312945|ref|YP_423209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Magnetospirillum magneticum AMB-1]
 gi|118595663|sp|Q2W0H5|MURD_MAGSA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82947786|dbj|BAE52650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Magnetospirillum
           magneticum AMB-1]
          Length = 457

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 119/348 (34%), Gaps = 35/348 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++A+TG+ GK+TT  +L   L       A  G+        L L  +P D  + + 
Sbjct: 108 PGARMLAVTGTNGKSTTTTLLAHVLDECGLPVAAGGNLGT---AALDLPELPGDGRY-VL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     LTH ++  +A++  + P HL    G+    +AK  +F+ L   G   +
Sbjct: 164 ELSSYQL----ELTHSLKLGVAILLNVTPDHLGRHGGMAGYIAAKRRVFDFLTPGGAAVV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD     + A+    GI+ +       + D  L +     E   ++       ++ + 
Sbjct: 220 GIDDGPCRAIVAELDRRGIRVV-----KISVDSVLAEGVSAPEGVLLDNAKPVCDLKTIP 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN                   +AL+ +    G   R            I++S
Sbjct: 275 SLPGRHNWQNACAVYAAARAEGLSPKQIAQALATY---PGLAHRQELVGEDHGIAWINDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +++ A+     +          + G   E G  S   H           I H +
Sbjct: 332 KATNADAVEKALVCYDHVY-------WILGGQAKEGGIASLEKH--FGR------IQHAF 376

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV 449
           L G    A    L   +      T+D      ++      + G VV++
Sbjct: 377 LIGEATEAFAATLDGKVRFTRCATLDKAVAAARNLAVSDSIPGAVVLL 424


>gi|116630054|ref|YP_815226.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri ATCC
           33323]
 gi|238853758|ref|ZP_04644124.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri 202-4]
 gi|282851267|ref|ZP_06260632.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           224-1]
 gi|311110319|ref|ZP_07711716.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri MV-22]
 gi|122273009|sp|Q041T4|MURC_LACGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116095636|gb|ABJ60788.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri ATCC
           33323]
 gi|238833567|gb|EEQ25838.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri 202-4]
 gi|282557235|gb|EFB62832.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           224-1]
 gi|311065473|gb|EFQ45813.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri MV-22]
          Length = 437

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 117/356 (32%), Gaps = 46/356 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVADSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    ++ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       ++   + L  F   +    R     + G  ++ID+ Y 
Sbjct: 266 FGDHSILNTTAVIAVAYTEKVPMEDIKEGLLTFKGAK----RRFAEKDFGDVSVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WL 406
            +P  M+A I    Q  P  E   + V          ++ +  D  E+L   + ++V  +
Sbjct: 321 HHPTEMRATIQAARQKFPDKE--LVVVF--QPHTFSRTKKYQKDFEEILRDVDKAYVTPI 376

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 A  D              V   + +  L            VVV   +   
Sbjct: 377 YASAREASGDISSEDLVNNIPGSEVIDLDNIADLTKH------KNAVVVFMGAGDI 426


>gi|255017880|ref|ZP_05290006.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           F2-515]
          Length = 295

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 119/325 (36%), Gaps = 43/325 (13%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV      LG L             T IAITGS GKT+T  +L+  + +I+ T   IG  
Sbjct: 1   PVIRYHKFLGQLID---------GYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDG 51

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
                          D ++   E        + +     +P  A++T I   H   F  +
Sbjct: 52  ---------TGSGTKDAEYFALEACEYQRHFLAY-----KPTYAIMTNIDWDHPDYFKSV 97

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +++ +A   + + ++K        DD+    L           I  FG  +  +FQ +  
Sbjct: 98  DDVFNAFETLGKQVKKAVFAL--GDDAELRKLTLDI------PIIYFGFGEENEFQAKNV 149

Query: 264 KQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            + +  +  +V  + + +        G H   N L  + +       V+     L  F  
Sbjct: 150 IKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEG 209

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +    R      +G   L+D+ Y  +P+ ++A ++   Q   + + + +AV        
Sbjct: 210 VK----RRFSITEKGNQVLVDD-YAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTF 260

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLS 407
             +++F    A+ L+L     V+L 
Sbjct: 261 TRTRTFLQGFADSLNL--ADEVYLC 283


>gi|306824891|ref|ZP_07458235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433102|gb|EFM36074.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 444

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 140/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSENAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G ++++ DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAEDNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +  G  T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKVVNG--TIIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D  +    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAKALSQADAVY--LAKIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L D + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLADKIKKKSQVITVENVSPLLEH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
           neptunium ATCC 15444]
 gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 471

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV G  ++     +   A   R++  ++A+TG+ GK+TT  ++   L    +     G+
Sbjct: 94  VPVIGDMEL---FARAVQALPERARPKVVAVTGTNGKSTTTALIGHILKQAGRDARVGGN 150

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +   L LA +  +  + + EL    L     L   +   ++V   ++P HL    G
Sbjct: 151 IGTGV---LDLAALHSNAIY-VLELSSYQLD----LVKSLHCDVSVFMNLSPDHLDRHGG 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI------YSFGKSKNA 256
           ++   +AK  IF+         + +DD + + +     A G + +      Y+ GK  +A
Sbjct: 203 MDGYQAAKMRIFQNQTDKNVAVIGFDDIYTQSIAIGLSAKGPQKVVQISSTYTLGKGISA 262

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               R +   S ++          ++     IG H  QN          L  D  T    
Sbjct: 263 -VDGRLYDNQSGKAEFV-----GKLDECPALIGRHNHQNAAAAYAACRALGLDPATI--- 313

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           ++      G   R            I++S   N  + + A+     I     G   A   
Sbjct: 314 MAGLRTFPGLAHRMEAVGELDGIRFINDSKATNAQAAEQALRSFKNIYWIAGGVPKA--- 370

Query: 377 DMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHVHYSET----MD 431
                          +A + SL+ N++  +L G    A    L   +      +    ++
Sbjct: 371 -------------EGIAPLASLFPNVTKAYLIGQAEDAFAATLNGKVPSQVCGSLDRAVE 417

Query: 432 GLFLFIQSSLVDGDVVVV 449
             +   +++   G V++ 
Sbjct: 418 AAYRDAKAAGEPGAVILF 435


>gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 499

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 149/426 (34%), Gaps = 50/426 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH      V   A +VV +     +  +      G    L   ++            ++A
Sbjct: 74  GHR--EEQVPANAIVVVTSAIHEDNPEAARAKALG----LEIWHRSQALDFCTRSHELVA 127

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  M+  AL  I    +   +    I    T AR+     F + E   S  
Sbjct: 128 VAGAHGKTSTSSMMAHALLDIGADPS--FAIGGIIADLGTGARLGSGSAF-VIEADESDG 184

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + +      P + VIT I P HL ++        A       L K GT+ L  DD+  
Sbjct: 185 SFLNY-----SPAVEVITNIEPDHLDHWGSSAAFEQAFVNFTGRLRKGGTLVLCADDAGV 239

Query: 233 ELLKAKSHALG---IKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + L  +    G      + S+G     + +   QL + +    +   +V +     +V H
Sbjct: 240 KRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFH 299

Query: 286 HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G HM  N    LG   +L  D+   I AL  F    G  +R +    +    
Sbjct: 300 GQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTFS---GADRRMQPVGERDGVR 356

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH----------- 389
           + D+ Y  +P  + A +     ++   +GR +        +   S+++H           
Sbjct: 357 IYDD-YGHHPTEIAATLQAARDLAG--KGRLLVCF--QPHL--YSRTYHNVDAFARVFAT 409

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +D   V S+Y      + G +   + + L +     Y   M    L    +   GD ++ 
Sbjct: 410 VDDLTVCSVYAAREAPIPGVNGNIITEHLGKG---TYVADMYAAGLHAFRAARPGDFLLF 466

Query: 450 KSSNSC 455
             + S 
Sbjct: 467 LGAGSI 472


>gi|293192329|ref|ZP_06609440.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
 gi|292820244|gb|EFF79238.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
          Length = 463

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 124/373 (33%), Gaps = 31/373 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +++    A   S    + + G+ GKTTT  ML I LS+  +        +  + V   L 
Sbjct: 94  IHRSQALALAASGMRFVGVAGAHGKTTTSGMLAIGLSACGR--------DPSVAVGGVLP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           ++      G  ++ ++   E         P I ++T + P HL  +   EE      E  
Sbjct: 146 QLGTGAHLGGGDVFVAEADESDGSFLNYTPAIEIVTNVEPDHLDRYHSREEFEGIFVEFA 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQS 270
             +   G +    +D     L   + A G++ + ++G+ + +    D  +   +  ++ +
Sbjct: 206 RRMVPGGLLVTCAEDEGAVRLAQSARAEGLR-VVTYGRRERSLCTPDVVIADVRVEAQGA 264

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S  +     G H   N                     L  F    G  +R+
Sbjct: 265 GASLTWGELSASLALSVPGEHNVLNAAAAWVAGIECGLSPQAIADGLGEFT---GAARRF 321

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                 G   L D+ Y  +P  ++AAI     ++    G    V      +   ++ F  
Sbjct: 322 EARGQVGSRRLFDD-YAHHPTEVEAAIREAHVVAGE--GDVTVVF--QPHLYSRTRIFAE 376

Query: 391 DLAEVLSLYNISHVWLSG-----FHVLALKDA---LPRSIHVHYSETMDGLFLFIQSSLV 442
             A+ LS     HV L+G            D+     R     Y E M        S   
Sbjct: 377 RFAQALS--GADHVVLAGIYGAREDPEPGVDSSLISSRIEGAFYVEDMHEAARLAASLTP 434

Query: 443 DGDVVVVKSSNSC 455
           +G V +   + S 
Sbjct: 435 EGGVCLTMGAGSI 447


>gi|328952239|ref|YP_004369573.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
 gi|328452563|gb|AEB08392.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
          Length = 514

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 129/377 (34%), Gaps = 36/377 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPL 151
            ALN+  V  R       + ++G+ GKTTT  +L   L +        IG    +     
Sbjct: 142 EALNRFLVQDRQA-----LVVSGTHGKTTTSSLLAWLLFAAGLDPGFMIGGIVRNFNANY 196

Query: 152 TLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            + + P    + + E         + R    L  P +A++T++   H   +  +  +A A
Sbjct: 197 RVGQGP----YVVLEGDEYDTAFFDKRPKFLLFHPRMAILTSVEFDHADIYRDLTHVAQA 252

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                  L   G +    D      + +++       +  +G + +A +Q R        
Sbjct: 253 FTTFVSQLPPDGELLAWGDAPLVRQVASQASC----QVAYYGLNSDAFWQGRNLTPKGAG 308

Query: 270 SWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +V  QG+  E  +    G H   N L  L +++ L  D  +  +AL  F   +   +
Sbjct: 309 MNFDVHRQGRFWESFYVPLAGRHNVLNTLAALAVLNDLGVDRRSLKEALPDFVGVK---R 365

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     +    T++D+ +  +P    A    L        GRR+    +        + F
Sbjct: 366 RLEVVGDVAGVTVVDD-FAHHPT---AVAETLLAARGRFPGRRLLTAFEPRTNTSRRRIF 421

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLA-----------LKDALPRSIHVHYSETMDGLFLFI 437
             D    L+  ++  V        A           + D   +     Y    D L   +
Sbjct: 422 QSDYVNALAAADLILVREPPDLWKAPEDDRFSSAQLVADLNRQGRPAWYFPDTDTLLAAL 481

Query: 438 QSSLVDGDVVVVKSSNS 454
            +    GDVV+V  SN 
Sbjct: 482 IAKAEPGDVVLVM-SNG 497


>gi|310779640|ref|YP_003967973.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
 gi|309748963|gb|ADO83625.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
          Length = 443

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 128/357 (35%), Gaps = 42/357 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ML  A+ S+  T          I V   L  +  +   G  +L ++
Sbjct: 104 IAVAGTHGKTTTSSMLGAAMLSLDPT----------IVVGGILPEINSNAKAGSSKLFIA 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P  ++IT I   HL N   +E I  +  E  +  +    + +N D  
Sbjct: 154 EADESDNSFLYLNPFTSIITNIEADHLENHGSLENIERSFIEFIDKTKDE--VIVNIDCE 211

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               +       G + I ++  K+ NAD      +    +   EV + G+++   V    
Sbjct: 212 NIRKVIK-----GKEKIKTYSLKNNNADIYASNIRVEDSKIHYEVTVCGENLGTFVLSVP 266

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +      + +   K L  F   +G  +RY    ++     I + Y  
Sbjct: 267 GEHNVSNSLPVIYLAHKYGVEKEEMKKMLKFF---KGAKRRYDILYDKN--VKIIDDYAH 321

Query: 349 NPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +P  +KA +                PH   R   +L +   + + +         +L ++
Sbjct: 322 HPTEIKATLQGARSIEKGKIVAVFQPHRYSRVKFLLEEFKGVFDNADE-----VLLLPVF 376

Query: 400 NISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +       G  +  L +    ++I V   E  +     +     +G V +   + S 
Sbjct: 377 SAGEKDEFGVGIEKLAEKTGHKNIRV---EKNEDNLSVLMEDKENGTVFLFMGAGSI 430


>gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 481

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 162/457 (35%), Gaps = 65/457 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FFA KG  +   DF+  A+ KG  L V   D       + IPV 
Sbjct: 35  FDSLSYDSRQADEQTLFFA-KGSAFKA-DFLRQAIAKGLRLYVSEIDY-----QVGIPVI 87

Query: 87  GVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+++  A  L  +A     ++K  ++A TG+ GKTT        L    K  A + + N
Sbjct: 88  LVNNIKHAMSLAAMAFYDYPQNKLKLLAFTGTKGKTTAAYFAYHMLKESHK-PALLSTMN 146

Query: 145 NHIGVP---LTLARMPVDVDFGIFEL-----GMSHL----GEIRFLT---HLVRPHIAVI 189
             +       +    P  +D           GM+HL        +L    + +   + V 
Sbjct: 147 TTLDGQHFFKSQLTTPESLDLFAMMAQCVANGMTHLVMEVSSQAYLVGRIYGLTFDVGVF 206

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             I+P H+        E+    K  + E    +  + +N     F +L  +         
Sbjct: 207 LNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVVVNSGMEHFNILAEQVA------- 256

Query: 248 YSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  DF  +    +  ++     Q  GK   +     IG    +N +        
Sbjct: 257 -----DKPHDFYGKGACNRLLQRQAFSFQAAGKVAGDYAIQLIGSFNQENAMAAGLACLR 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L A ++   + ++      GR +          F      Y  N  S++  +SV+ +   
Sbjct: 312 LGASLEDIRQGIAK-TNVPGRMEVLTMTNQAKVFV----DYAHNGDSLEKLLSVVEE--- 363

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
           + +G+   +LG     GE  ++   D  +V++ +    + L+           + + +  
Sbjct: 364 YQKGQIYLILGAPGNKGESRRA---DFGQVINQHPNVRIILTADDPNFEDPQLISEEIAS 420

Query: 421 SIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KSS 452
            IH       +  + +   ++    + D +++  K +
Sbjct: 421 YIHREVDIIIDRKEAIKTGMERCQNEQDALIIAGKGA 457


>gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
 gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
          Length = 450

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 154/432 (35%), Gaps = 63/432 (14%)

Query: 33  DSRSIAP--QEAFFAIKGPHYD--GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           DSRS       A  A  G  +D  GHD    A+  GA L+ ++  +             V
Sbjct: 36  DSRSREELVDVAELADHGLRFDCGGHD---AALLAGADLIAISPGIP----------LTV 82

Query: 89  DDVLGALNK-------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             V GAL         + +AAR    A ++AITG+ GK+TT  ++   +    +     G
Sbjct: 83  PAVAGALQAGVPVQGEIEIAARE-LSAPMVAITGTNGKSTTTCLMGEIMRCWGRRAFVGG 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +       PL  A    D D+ + E+    L  I       RP   ++  +   HL  ++
Sbjct: 142 NLG----TPLIEATRSTDWDWIVAEISSFQLEAIDTF----RPRYGMLLNLTADHLDRYA 193

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL----LKAKSHALGIKTIYSFGKSKNAD 257
           G+ E  +AK  +FE +       +N DD+        L  +        +   G     D
Sbjct: 194 GMGEYVAAKLRLFENMTAEDVAVVNADDALVVRSTTDLPCRKIPFSSSRVLDEGM--GFD 251

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            Q   W+    Q   +V              G H  +N++  L    +     D A KA+
Sbjct: 252 GQHIVWRHAGRQERFDV--------ADLQLKGLHNVENVMAALIPPLMEGCPTDIAWKAV 303

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F    G   R          +  D+S   N  S+  +++ L        G    + G 
Sbjct: 304 CGFS---GLDHRMVLVREIDGVSWYDDSKGTNVGSVVKSLAGLQ-------GPVTLIAGG 353

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
             + G+ +      LA ++    + H+ L G     ++ A      +  +++++      
Sbjct: 354 KDKGGDYAP-----LAGLIGE-KVEHLILIGQAADRMQAAFQGMTTILRADSLEAAVQQA 407

Query: 438 QSSLVDGDVVVV 449
           Q   + G  V++
Sbjct: 408 QQVTMAGGTVLL 419


>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
 gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
           -diaminopimelate ligase [Oryza sativa Japonica Group]
 gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
           expressed [Oryza sativa Japonica Group]
 gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
          Length = 757

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 141/399 (35%), Gaps = 34/399 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   + +     V   G+  D+  +A  + +  + G    G   +  A +
Sbjct: 225 MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADK 281

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +GA  VV +  +          +  VDD+  AL  L      R      +I + G+ G T
Sbjct: 282 RGAVAVVADQTVDIEGTLACRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-----------------IGVPLTLARMPVDVDFG 163
           TT  ++     ++      +G    +                 I V   +A M  +    
Sbjct: 342 TTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGAEA 401

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
                 +       +   +   IAV+T +  A        EE  ++ A +F  +   +  
Sbjct: 402 ALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPERH 461

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD       A+         YSF ++K AD    K++    ++ + VQ     +
Sbjct: 462 RKVVNIDDPSAPFFAAQGGQDVPVVTYSF-ENKKADVHTLKYQLSLFETEVLVQTPHGIL 520

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    +G     N+L ++ +   + A ++  +K +       G   R      +  F +
Sbjct: 521 EISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPG---RCELIDEEQAFGV 577

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           I + +   P S+   +  + ++ P    R + V+G   E
Sbjct: 578 IVD-HARTPESLSRLLDGVKELGP---RRIVTVIGCCGE 612


>gi|254282164|ref|ZP_04957132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
 gi|219678367|gb|EED34716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
          Length = 441

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 132/411 (32%), Gaps = 54/411 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++  +V       + V G  D+  A           + A +I ITGS GK+T  EM+ 
Sbjct: 70  IAMDHPLVDRALKAGVRVIGDIDLFMA----------EANAPVIGITGSNGKSTVTEMVA 119

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L +     A  G+        L L   P D    + EL    L     L       +A
Sbjct: 120 AILRASGSAVAVGGNLGTP---ALDLLEHPAD--IYVLELSSFQLERSEKLGLA----VA 170

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            +  I+  HL     +     AK  IF G     T+  N  D     L  +   +    +
Sbjct: 171 TVLNISADHLDRHGSMPRYHQAKHRIFRGAR---TVVANRADPLTVPLLEEKADV---VV 224

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +  G+    D +    +    +  +       +        G H   N L  + + S   
Sbjct: 225 WRDGE---PDLREFGTRVVDGEVMLCRGFDTLAAATELPLPGRHNLANALAAMAVASAAG 281

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +  +  L  FH   G   R            I++S   N  + +AA+  L       
Sbjct: 282 VDDEQLVPGLKHFH---GLPHRCALVRELDGIRFINDSKGTNIGATRAALEGLGG----- 333

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  + + G + +  + ++       +  +      V   G     ++ AL  ++     
Sbjct: 334 NGNVVLIAGGVGKGQDFTE------LQASAEQRCRRVLTVGESAREIELALGATVPCQRV 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVVK------------SSNSCGFYRLINLLLE 466
           ET++      +     GD+V++             ++    F   +  L E
Sbjct: 388 ETIEQAVTRGRELAKAGDIVLLSPACASFDQFSGYAARGLAFEEAVKALQE 438


>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
          Length = 437

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 126/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  +IAITGS GK+T  ++  + + +        G+          L  +  D D  + E
Sbjct: 107 QKPVIAITGSNGKSTVTDLTGVMVKAAGLDVGVGGNIGVP-----ALDLLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+         +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFDH---AALAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++       + +FG S N DF     +    ++W+    Q         
Sbjct: 215 RDD-------QETFPDAEMPLVTFG-SDNQDF---GLEVDGNRTWLLDHGQRVVASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLSNALVVLALLKAAGVDYHNALNA---LKNYTGLTHRCQVVADNQGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + S      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFSP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P        +TM+ +   + S L  GD+V++
Sbjct: 370 FGADGD---DFMPLHESAIRFDTMEDVIQQVSSQLKPGDMVML 409


>gi|313206533|ref|YP_004045710.1| udp-n-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|312445849|gb|ADQ82204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|315023526|gb|EFT36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer RA-YM]
 gi|325336018|gb|ADZ12292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Riemerella
           anatipestifer RA-GD]
          Length = 441

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 33/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+     A   + A I+AITGS GKTTT  ++   L          G+        +   
Sbjct: 88  LSSEIEFASEFTNAKIVAITGSNGKTTTTSLIYHILKDNGMNVGLGGNIGKSFAKQV--- 144

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 D+ + E+    L +I+      RP+I+++  ++  HL  ++   EE A AK  I
Sbjct: 145 -ADESFDYYVLEISSFQLDDIQNF----RPYISLLLNLSQDHLDQYNYNYEEYALAKFRI 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWM 272
            E  E       N DD   + +  +      K  +S  ++     +   +      Q   
Sbjct: 200 TENQEYDNFFIYNKDDEMSQKILQELDLKVKKVPFSIKETLSEGGYMNDENIVVKFQGEF 259

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            ++++          IG H   N L       IL    ++   +L  F   +    R + 
Sbjct: 260 TMKIRD------LALIGNHNVANSLAASIAGKILNISNESIRNSLMTFQAVD---HRLQE 310

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N      I++S   N  +   A+  ++Q +    G            G    + + ++
Sbjct: 311 IANLNGVKFINDSKATNVNATYYALESMTQPTVWIVG------------GVDKGNDYTEI 358

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            E L    +  +   G     + D         Y + +M+      +S    GD V++
Sbjct: 359 -EELVKKKVKAIVCLGIDNQKIIDFFRDKKEFIYNTSSMEEAIKISKSIAEAGDAVLL 415


>gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 124/386 (32%), Gaps = 45/386 (11%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           I   ++PV    D    +      A   SKA II ITGS GKTTT  ++   L   + + 
Sbjct: 82  IPYTALPVQWAIDRHIEIVTEVEVAYRMSKAPIIGITGSNGKTTTTTLVGKMLEEAELSP 141

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+    +      A    + D  + EL    L      T   RPHIA +  +   HL
Sbjct: 142 VVAGNIGRALSEAALDAN---ETDRLVVELSSFQLKG----TTDFRPHIACLLNVYETHL 194

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E+  ++KA++F    +  T  +N+DD     L     A     +  F   +   
Sbjct: 195 DYHGSMEDYVASKAKLFANQTQEDTAVINWDDPVCRSLVPTIKAG----LMPFSMKE--- 247

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLGIVSILTADVDT 312
            +L       E   +    +  +   +         G H  +N L    I      ++  
Sbjct: 248 -KLLPGVYLDEHQKIVFTDRSGATHTILPAKELGIRGSHNIENALAASAIALCAGVNISN 306

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L +F   E    R             ++S   NPA+   +I    Q         +
Sbjct: 307 IAGVLKLFRGVE---HRLEYVGTYHNLEFYNDSKATNPAATIKSIEAFEQ-------PLV 356

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------- 425
            + G     G    S + +L  VL    +  +   G     ++ A  ++           
Sbjct: 357 LIAG-----GLDRGSDYRELIPVLQER-VKALVTLGQTGEKIQRAAEQAGLTRRKSVDTA 410

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVV 449
               E +             GD V++
Sbjct: 411 KGVQEAIAEAVELAALLAEPGDTVLL 436


>gi|146318130|ref|YP_001197842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 05ZYH33]
 gi|158514131|sp|A4VTK3|MURD_STRSY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145688936|gb|ABP89442.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           05ZYH33]
          Length = 449

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S   I+ ITGS GKTTT  M+   L++ KK     G+         ++A+     D
Sbjct: 106 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCGNIGYP---ASSVAQTATAED 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PHIAV+T +  +H+      E+  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMG----TESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAED 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N++    + L  ++ A    T+  F   +     +      ++    ++  +G+ +
Sbjct: 219 FVVINFNQKEAKELAGQTKA----TVVPFSTQE-----VVDGAYLADG---KLYFKGEYI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +L  D     ++LS F   +    R +        
Sbjct: 267 MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAFGGVK---HRLQFVGEINGV 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 324 SFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDLV------ 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     ++ A  ++  V   E   +        +    GD+V++
Sbjct: 371 GLKKMVILGQSAPRVQRAADKA-EVETIEALDIADATRKAFAIAEKGDIVLL 421


>gi|146320316|ref|YP_001200027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 98HAH33]
 gi|253751317|ref|YP_003024458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|253753218|ref|YP_003026358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|253755041|ref|YP_003028181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|158514149|sp|A4VZT8|MURD_STRS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145691122|gb|ABP91627.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           98HAH33]
 gi|251815606|emb|CAZ51192.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|251817505|emb|CAZ55249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|251819463|emb|CAR44977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|292557890|gb|ADE30891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           GZ1]
          Length = 449

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S   I+ ITGS GKTTT  M+   L++ KK     G+         ++A+     D
Sbjct: 106 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCGNIGYP---ASSVAQTATAED 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PHIAV+T +  +H+      E+  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMG----TESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAED 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N++    + L  ++ A    T+  F   +     +      ++    ++  +G+ +
Sbjct: 219 FVVINFNQKEAKELAGQTKA----TVVPFSTQE-----VVDGAYLADG---KLYFKGEYI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +L  D     ++LS F   +    R +        
Sbjct: 267 MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAFGGVK---HRLQFVGEINGV 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 324 SFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDLV------ 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     ++ A  ++  V   E   +        +    GD+V++
Sbjct: 371 GLKKMVILGQSAPRVQRAADKA-EVETIEALDIADATRKAFAIAEKGDIVLL 421


>gi|87301576|ref|ZP_01084416.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87283793|gb|EAQ75747.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 487

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 141/439 (32%), Gaps = 58/439 (13%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           + DG   +  A+   +  V      + +     + +    DVL AL              
Sbjct: 69  NRDG---VTSALVVISTAVPAENPELMAAREAGLTICHRSDVLAALINAQ---------P 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IA+ GS GKTTT  ++   L++  +   A IG             R        + E  
Sbjct: 117 SIAVAGSHGKTTTSTLIATLLAATDQDPTAVIGGIVPAFQSNARSGRG----RVLVAEAD 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    ++F + L      +IT +   H  ++  +E +         G    G++  N D
Sbjct: 173 ESDGSLVKFRSSL-----GLITNLELDHTDHYPDLEALIQTLQRFAAGC---GSLLANAD 224

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
                              +S  +S+  +F     ++  E +  +    G+ +       
Sbjct: 225 CPVLR------QHFQPGAWWSIERSEGVEFAALAVEEHGEGTMADFYENGELVGRFSLPL 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    L    +          A+         G+R+          ++D+ Y 
Sbjct: 279 PGRHNLSNATAALAACRLEGVPFGALATAMRTLRSP---GRRFDFRGRWAGRQVVDD-YA 334

Query: 348 ANPASMKAAISVLSQIS-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--- 397
            +P+ ++A + +   +        P    R +AV          +  F    A  L+   
Sbjct: 335 HHPSEVEATLHMARLMVTSGRSPLPEVPQRLVAVF--QPHRFSRTAEFMDAFAAALALAD 392

Query: 398 ------LYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 LY      + G +  AL + L +    + +  S T++ L   +      GD+V+
Sbjct: 393 TVLLAPLYAAGEAPIPGVNSQALANRLQQLRPDLPLRVSATLEQLAEQVVRRSQPGDLVL 452

Query: 449 VKSSNSC-GFYRLINLLLE 466
           V  +    G +  +  L E
Sbjct: 453 VMGAGDVNGLWSRLQALAE 471


>gi|319757602|gb|ADV69544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis JS14]
          Length = 447

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S   I+ ITGS GKTTT  M+   L++ KK     G+         ++A+     D
Sbjct: 104 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCGNIGYP---ASSVAQTATAED 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PHIAV+T +  +H+      E+  +AK  I   +    
Sbjct: 161 TLVMELSSFQLMG----TESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAED 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N++    + L  ++ A    T+  F   +     +      ++    ++  +G+ +
Sbjct: 217 FVVINFNQKEAKELAGQTKA----TVVPFSTQE-----VVDGAYLADG---KLYFKGEYI 264

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +L  D     ++LS F   +    R +        
Sbjct: 265 MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAFGGVK---HRLQFVGEINGV 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 322 SFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDLV------ 368

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     ++ A  ++  V   E   +        +    GD+V++
Sbjct: 369 GLKKMVILGQSAPRVQRAADKA-EVETIEALDIADATRKAFAIAEKGDIVLL 419


>gi|262037242|ref|ZP_06010724.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
 gi|261748714|gb|EEY36071.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
          Length = 447

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 138/394 (35%), Gaps = 41/394 (10%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V++ +  + +  + A+L +K   IA+ G+ GKTTT  M+++A      T         
Sbjct: 85  YIVENGIKKIKRGELLAQLMNKFEGIAVAGTHGKTTTSSMMSVAFLEKDPT--------- 135

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            I V   +  +  +   G  E  ++   E       ++P  +V+T + P HL +    E 
Sbjct: 136 -IVVGGIIPEIQSNSKIGNSEYFIAEADESDNSFLFIKPKYSVVTNVEPDHLEHHGTYEN 194

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I  +  +  +  EK     L  D      L  K+  +    I+   K ++          
Sbjct: 195 IKKSFEKFIDSTEK--LAILCKDCEDMSTLNIKNKNI----IWYSIKKEDVHIFATNITV 248

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +  EV   GK++ E      G H   N L  + +      ++DT  + L+ F   +
Sbjct: 249 KDGCTHYEVIKNGKNLGEFTLCIPGEHNVSNSLPVIYLADEAGCNMDTVKERLAQF---K 305

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVL 375
           G  +RY+   ++     I + Y  +P  +K  I                PH   R     
Sbjct: 306 GANRRYQVIYDKN--LRIIDDYAHHPTEIKVTIEAAKATEKGNVTVIFQPHRYSRTKFFF 363

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            D     + +         +L +Y+     +       L + +   + V+   + + +  
Sbjct: 364 DDFVTSLKKADEL-----ILLPIYSAGEDNIYDVSSEKLAEKIGNGVKVY---SEEEIQK 415

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++ +       V   + S    +L + +     
Sbjct: 416 LVKDNENSNKSYVFMGAGSV--SKLAHEIKNTLK 447


>gi|154509041|ref|ZP_02044683.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798675|gb|EDN81095.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
          Length = 463

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 122/373 (32%), Gaps = 31/373 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +++    A   S    + + G+ GKTTT  ML I LS+           +  + V   L 
Sbjct: 94  IHRSQALALAASGMRFVGVAGAHGKTTTSGMLAIGLSACG--------LDPSVAVGGVLP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           ++      G  ++ ++   E         P I ++T + P HL  +   EE      E  
Sbjct: 146 QLGTGAHLGGGDVFVAEADESDGSFLNYTPAIEIVTNVEPDHLDRYHSREEFEGIFVEFA 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQS 270
             +   G +    +D     L   + A G++ + ++G+ + +    D  +   +  +  +
Sbjct: 206 RRMVPGGLLVTCAEDEGAVRLAQSARAEGLR-VVTYGRRERSLCTPDVVIADVRVEAHGA 264

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S  +     G H   N                     L  F    G  +R+
Sbjct: 265 GASLTWGELSASLALSVPGEHNVLNAAAAWVAGIECGLSPQAIADGLGEFT---GAARRF 321

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                 G   L D+ Y  +P  ++AAI     ++    G    V      +   ++ F  
Sbjct: 322 EARGQVGSRRLFDD-YAHHPTEVEAAIREAHVVAGE--GDVTVVF--QPHLYSRTRIFAE 376

Query: 391 DLAEVLSLYNISHVWLSG-----FHVLALKDA---LPRSIHVHYSETMDGLFLFIQSSLV 442
             A+ LS     HV L+G            D+     R     Y E M        S   
Sbjct: 377 RFAQALS--GADHVVLAGIYGAREDPEPGVDSSLISSRIEGAFYVEDMHEAARLAASLTP 434

Query: 443 DGDVVVVKSSNSC 455
           +G V +   + S 
Sbjct: 435 EGGVCLTMGAGSI 447


>gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
 gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
          Length = 471

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 137/362 (37%), Gaps = 34/362 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +   A R       +AITG+ GKTTT  ++T  L S       +G+        L   
Sbjct: 103 IGEPEFAWRESPD-RWVAITGTNGKTTTTSLVTAMLRSAGTDAVSVGNIGRLCTDELVRR 161

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R   D  + + EL    L      + L+ P  A +  + P HL     +E  A+AK  IF
Sbjct: 162 R---DGAWFVAELSSFQLA----TSRLLHPRCAALLNVTPDHLEWHGSLEGYAAAKERIF 214

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + L       ++ +D +      +  A G++T++  G  +     +          W+ V
Sbjct: 215 QNLSGDDLAVVSQEDGYCRDAIGRLEARGVRTLH-VGVREEP---VSGEAAFVRDGWLTV 270

Query: 275 QLQGKSMEV----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +L G    V         G H AQNML    +   L A V+   +AL  FHP E    R 
Sbjct: 271 RLDGGERRVAPMANLPLRGEHNAQNMLAASSMALFLGASVEAVRRALEGFHPIE---HRI 327

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQS 387
                      +++S   N  S++ A++   +      GR + +LG      ++G L+++
Sbjct: 328 EPVGEFAGVRFVNDSKATNTDSVEKALTAFDR------GRIVVLLGGHDKGTDLGSLARA 381

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +    +    +       +G  +            V  +  +   FL    +   GDVV
Sbjct: 382 VNER-CKAAVCFGA-----AGERIARAVREAGGPTQVIRAPHLREAFLAAVGAARPGDVV 435

Query: 448 VV 449
           ++
Sbjct: 436 LL 437


>gi|315606651|ref|ZP_07881662.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
 gi|315251661|gb|EFU31639.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
          Length = 443

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 120/357 (33%), Gaps = 32/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  AAR      +  ITGS GKTTT  ++     +        G+    + + +   
Sbjct: 90  ISEIEFAARYTHSKMVC-ITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIGKSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                 ++ I EL    L  +    +  R +IA++  I P HL  +   ++    AK  I
Sbjct: 146 -AEDPHEYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDNCMQNYVDAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +      +     DD   +    K     +K  +S  K K +   + + +   E+    
Sbjct: 201 LQNQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEEGEYKIEK---- 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L      +I     +   K+L  F   E    R    
Sbjct: 257 -PTPFNMEQEELSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +   A+  +           I +LG     G+   + +  + 
Sbjct: 313 CKVGGVQYINDSKATNVDACWYALESMKN-------PTILILG-----GKDKGNDYNQIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E++    +  V+L G     L D      I V  + +M             GD V++
Sbjct: 361 ELVKKKCVGLVYL-GADNKKLHDNFDALGIPVRDTHSMKDCVAACYEMARPGDTVLL 416


>gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis OX99.30304]
          Length = 445

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD+F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNVDDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATKD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +     D+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|78188427|ref|YP_378765.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170626|gb|ABB27722.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 494

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 144/419 (34%), Gaps = 40/419 (9%)

Query: 54  HDFILHAVQK-GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           H F    ++      VVV   +      L   +    ++L A+  L     + +  +++ 
Sbjct: 75  HGFAEENLRSFSPDAVVVGNAISRGNPELEYALEQHLELL-AMPDLVRRHLIANNTSVV- 132

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  ++   L +        G     I     L   P   +   F +     
Sbjct: 133 VAGTHGKTTTTSLVAWMLEAGGLQ---PGFLIGGIPENFGLGCRPSAGEGAGFFVTEGDE 189

Query: 173 GEIRFLTH-----LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +  F        L RP IA+I  +   H   F+ +E+I  +       + + G + +N 
Sbjct: 190 YDTAFFDKRSKFLLYRPDIAIINNVEFDHADIFNSLEDIKRSFRLFVNLIPRNGLLLVNG 249

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           DD        K+       +  F    NA++         E S  E+   GKS+   H  
Sbjct: 250 DDPVALECAEKAFC----PVERFALHANAEWSATNIHSEEEGSSFELLHHGKSVGTFHVP 305

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N +  L          +     L  F   + R +           TLI++ +
Sbjct: 306 LFGNYNIMNAIAALAAAYRCGVSFEALADGLPHFQRPKRRMEL--LGEFADGITLIED-F 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P +++  +  ++Q      GRRI    +          F  +LA   +  ++  V L
Sbjct: 363 AHHPTAIRVTLEAIAQ---RYNGRRIVACFEPRSNTTTRNIFQEELASCFAPASV--VVL 417

Query: 407 --------SGFHV---LALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV 449
                    G H      L++ L  +    +     ++    +  ++++    GDVVV+
Sbjct: 418 GKVHRPERYGDHALNTALLQEQLQSAGKEVFLAGNDADYPADIIRYLEAHRRHGDVVVL 476


>gi|144897248|emb|CAM74112.1| UDP-N-acetylmuramate--alanine ligase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 474

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 131/399 (32%), Gaps = 43/399 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  S  +PV    ++L  L +L  A         IAI G+ GKTTT  +++  L +
Sbjct: 82  PEVVAARSKMVPVVRRAEMLAELMRLKSA---------IAIGGTHGKTTTTSLVSAMLDA 132

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  I      I    T AR+  +    +         E       +     V+T I
Sbjct: 133 AGMDPTIIN--GGIINAYGTNARLGANDWMVV------EADESDGTFTKLPATCVVVTNI 184

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H+  +   +++  A     E +   G      D    + L A+   +  + I ++G 
Sbjct: 185 DPEHMDYYGSFDKLRDAFRTFVENIPFYGFAACCIDHPEVQALIAR---VPDRKIVTYGF 241

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYHMAQNMLMTLGIVSI 305
           S  A  +    K     +  +V +  +         +V     G H   N L  +   + 
Sbjct: 242 SPQALIRATNVKIGPGGARYDVVITDRVTGATRIIDDVRLPMYGEHNVLNSLAAIACANE 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    D   KAL  F   +   +R+         T+ID+ Y  +P  + A +      + 
Sbjct: 302 LGLTNDVVRKALGGFSGVK---RRFTKTGEAKGITVIDD-YGHHPVEINAVLKAARSATT 357

Query: 366 HGEGRRIAVL--GDMCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              G  IAV+       +  L   F       D   V  +Y      + G     L   L
Sbjct: 358 ---GNVIAVVQPHRYSRLSSLFPEFCTCFNDADTVIVADVYAAGEQPIDGADRDHLVMGL 414

Query: 419 PRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
               H H     +   L   +      GD+VV   + + 
Sbjct: 415 QEHGHRHVIALPEASALAGIVDGLAKSGDMVVCLGAGNI 453


>gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 485

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 57/393 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FF +KG ++ G +++  A+ +G    +   D       + IP  
Sbjct: 35  FSKLSYDSRDADNQTLFF-VKGANFKG-EYLQSALNQGLQAYISEVDY-----EVGIPAI 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D+  A++   +A     + K  ++A TG+ GKTT+       L    KT A + + N
Sbjct: 88  IVNDIKHAMSIIAMAFYDNPQDKLKLLAFTGTKGKTTSAYFAYHILKQSHKT-AMLSTMN 146

Query: 145 NHIGVP------------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +               L L +M  +         I E+        R   + +   + 
Sbjct: 147 TTLDGQTFFKSQLTTPESLDLFKMMAECVSNGMTHLIMEVSSQAYLVGR--VYGLTFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + E    +  + +N D   F +LK +       
Sbjct: 205 VFLNISPDHIGPIEHPNFEDYFYHKRLLMEN---SRAVIINSDMDHFHILKEQVAKQDHD 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
               +G++ +           ++      +  GK +       IG    +N +       
Sbjct: 262 ---FYGQASDN--------SITDSQAFTFKATGKLAGNYRTLLIGRFNQENAIAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A  +   K ++      GR +          F      Y  N  S++  +SV+ +  
Sbjct: 311 RLGASHEDIQKGIAQ-TTVPGRMEVLNHPCGAKVFV----DYAHNGDSLEKLVSVVEE-- 363

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            H +G+   ++G     G   +S   D A+V++
Sbjct: 364 -HQKGQITLIIGS---TGNKGESRRADFAKVIN 392


>gi|167749944|ref|ZP_02422071.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
 gi|167657111|gb|EDS01241.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
          Length = 461

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 134/372 (36%), Gaps = 34/372 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             + ++G+ GKTTT  MLT              + +    +   L  +      G  ++ 
Sbjct: 110 KAVCVSGTHGKTTTSSMLTHM--------YLAQNVDLSTVIGGKLKAIGGSGRAGSSDVM 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +    E       + P+I++I  I   HL  F  ++ + ++  +  +    T  + +N D
Sbjct: 162 VCEACEFSNTFLHLFPNISIILNIDADHLDFFKTMDNLRASFTKFCDN--TTDILVVNGD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV-HH 286
           D     ++A   +   K I +FGK+    +     K+ S+ Q+  ++   G  +E +  H
Sbjct: 220 DEN--TMRAVKASGFNKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIERISIH 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N +             +   K LS F    G G+R+      G  T++D+ Y
Sbjct: 278 VPGAHNVLNAVAACAAALATGVTPENINKGLSTFW---GAGRRFERLATIGGITVVDD-Y 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +PA + A +     +      R  AV          + +   D A  L +     V L
Sbjct: 334 AHHPAEVAATLKTAKAMQDFK--RVWAV--HQPFTYSRTYTLMDDFASALEI--ADKVVL 387

Query: 407 S---GFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
           +   G            D   +     +  T + +  ++  +    D+++          
Sbjct: 388 TEIMGSREKNTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESDDMIITLGCGDVYKV 447

Query: 457 FYRLINLLLEEF 468
            +R+  +L E++
Sbjct: 448 AFRIEEILREKY 459


>gi|148544474|ref|YP_001271844.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri DSM
           20016]
 gi|227363098|ref|ZP_03847233.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM2-3]
 gi|325682796|ref|ZP_08162312.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM4-1A]
 gi|189028997|sp|A5VKY3|MURC_LACRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148531508|gb|ABQ83507.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri DSM
           20016]
 gi|227071816|gb|EEI10104.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM2-3]
 gi|324977146|gb|EGC14097.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM4-1A]
          Length = 434

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 138/387 (35%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L+            T I I G+ GKT+T  +L+  L++++ T   IG          
Sbjct: 87  LKILSYPEAVENEVKNHTSIGIAGAHGKTSTTALLSHVLAAVEPTSYLIGDG-------- 138

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            + +   D  F +FE        + +      P  A++T +   H   F+ + ++  +  
Sbjct: 139 -VGKGNADARFFVFEADEYRDHFLAY-----HPDYAIMTNVDFDHPDYFNDLADVRDSFE 192

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + +++   IF   DD     L           +Y +G + + DF+    ++  E S 
Sbjct: 193 TYGKQVQR--AIFAWGDDPSLRDLNVDV------PVYYYGTNPDDDFRAENIQRTPEGST 244

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +   + + +     H  G H   N L  L +  +   ++D   + L+ F   +    R 
Sbjct: 245 YDAYFRDQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVK----RR 300

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +    T+ID+ Y  +P+ +KA I    Q  P  E   IAV            ++  
Sbjct: 301 FSETDIADTTIIDD-YAHHPSEIKATIDAARQKYPDRE--VIAVF--QPHTYSRLAAYID 355

Query: 391 DLAEVLSLYN---ISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             AE LS  +   ++ ++      +G    A  +           +TMD L  +      
Sbjct: 356 GFAESLSRADKTFVTPIFGSIRENAGNVSSADLEQRIDGSEGIDMDTMDKLLQY------ 409

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
              VVV   +        +    E++ 
Sbjct: 410 HNAVVVFMGAGD------VEKYEEKYK 430


>gi|294783651|ref|ZP_06748975.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480529|gb|EFG28306.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 463

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 121/321 (37%), Gaps = 28/321 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+ +T +  +        +  ++ +  L +  + A+L ++ T IAI G+ GKTTT
Sbjct: 59  KGADYVIASTAIKETNPEY---AYAKENGIKILKRGELLAKLLNRETGIAIAGTHGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ML+  +     T          I V   L  +  +   G  E  ++   E       +
Sbjct: 116 SSMLSAVMLKKDPT----------IVVGGILPEIKSNARPGKSEYFIAEADESDNSFLFM 165

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  +VIT I   HL     ++ I  +  E     +K     +  D      + A S   
Sbjct: 166 NPEYSVITNIDADHLDVHGNLDNIKKSFIEFILHTQKES--IICMDSKNL--MDAISKLP 221

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
             K++ ++  K +NAD   +  +    ++  EV +  +   E   +  G H  QN L  +
Sbjct: 222 EGKSVTTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKGEFSLNIPGEHNIQNSLPVI 281

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------TLIDESYNANPASMK 354
            +      + D   +AL+ F   + R         +  +        I + Y  +P  +K
Sbjct: 282 YLALKFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTKRVRIVDDYAHHPTEIK 341

Query: 355 AAISVLSQISPHGEGRRIAVL 375
           A +  +  +      R +A+ 
Sbjct: 342 ATLKAIKSVD---NSRLVAIF 359


>gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 481

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 139/403 (34%), Gaps = 59/403 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FFA KG  +   DF+  A+ KG  + V   D       + IPV 
Sbjct: 35  FDSLSYDSRQADEQTLFFA-KGATFKA-DFLKQAIAKGLKIYVSEIDY-----QVGIPVI 87

Query: 87  GVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+++  A  L  +A     + K  ++A TG+ GKTT        L    K  A + + N
Sbjct: 88  LVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGKTTAAYFAYHMLKESHK-PALLSTMN 146

Query: 145 NHIGV------------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +               L L  M            + E+        R   + +   + 
Sbjct: 147 TTLDGKSFFKSQLTTPESLDLFAMMAQCVANGMTHLVMEVSSQAYLVGR--VYGLIFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + E    +  + +N     F +L  +       
Sbjct: 205 VFLNISPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVVVNSGMEHFNILAEQVA----- 256

Query: 246 TIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                   K  DF  +    +  ++     Q  GK + +     IG    +N +      
Sbjct: 257 -------DKPHDFYGKGACNRLLQRQAFSFQAAGKLAGDYAIQLIGSFNQENAMAAGLAC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A +    + ++      GR +                 Y  N  S++  +SV+ + 
Sbjct: 310 LRLGASLKDIRQGIAK-TRVPGRMEVLTMTNQAKVVV----DYAHNGDSLEKLLSVVEE- 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             H +G+   +LG     GE  ++   D  +V++ +   H+ L
Sbjct: 364 --HQKGQIYLILGAPGNKGESRRA---DFGQVINQHPNVHIIL 401


>gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Janthinobacterium sp. Marseille]
 gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 144/441 (32%), Gaps = 51/441 (11%)

Query: 35  RSIAPQEAFF--AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           R IAPQ  F          DG DF+  AV  G        +++ +     IPV+G  ++ 
Sbjct: 47  RGIAPQAEFVGGPFDASLLDGVDFV--AVSPGLMPARELAEIIPAAAEKEIPVWGEIELF 104

Query: 93  G-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             AL  L           +IAITG+ GKTT   ++ +       T    G+ +      L
Sbjct: 105 AQALAALKE--DKGYAPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNISPAALDKL 162

Query: 152 T-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             +          + EL    L      T+ ++  +A +  +   HL     +   A  K
Sbjct: 163 HQVLTDDQLPQVWVLELSSFQL----HTTYSLQADVATVLNLTQDHLDWHGDMAAYADDK 218

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A IF          LN DD+    +     +  +  + +FG  +            +   
Sbjct: 219 ARIF---GSNTIRVLNRDDALVMQM-----SSPLSKVITFGADEAEQADCFGLVDENGMR 270

Query: 271 WMEVQLQGKSMEVV---------------------HHGIGYHMAQNMLMTLGIVSILTAD 309
           W+ V ++ +  +                           G H A N L  L +   +   
Sbjct: 271 WLSVAVEEEEPQKKRRKKDNVELAVSTNKLMPVDALKIRGQHNAINALSALALCRAIGLP 330

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
               +  L  +H   G   R    +  G     D+S   N  +  AA++ L         
Sbjct: 331 FAQLLHGLRDYH---GEPHRVEHVMTIGGVDYYDDSKGTNVGATVAALNGLGASQDGASN 387

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             + + G   +  + S      LA+ ++ Y    V L G     ++ AL    + +    
Sbjct: 388 HLVLIAGGDGKGQDFSP-----LADPVAKY-ARAVILIGKDADNIRAALQATGVDMINCT 441

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           T++            GD V++
Sbjct: 442 TLEEATQKAAELAQSGDAVLL 462


>gi|309812672|ref|ZP_07706416.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
 gi|308433367|gb|EFP57255.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
          Length = 479

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 127/379 (33%), Gaps = 24/379 (6%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      L  L++    A L      +A+ G+ GKTTT  M T AL +  +         
Sbjct: 97  VEVRRRGLPVLHRSQGLAMLMRAGRGLAVAGANGKTTTSGMATAALVAAGEK-------- 148

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               +   +A + V+   G  E+ +    E      +  P +A++T I   HL  +    
Sbjct: 149 PSFAIGANVAGLGVNAAPGEGEIFVVEADESDGSFVVYHPQVAIVTNIKDDHLDFYGTSA 208

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A A       +   G +    DD    L  A+        + ++G+  +AD ++    
Sbjct: 209 NLARAYETFAATIAPQGLLVACADDE-GSLALAQRRRAAGARVLTYGRDTDADVRIVAES 267

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPK 323
                  M ++      +V  H  G H   N       +V           + L  F   
Sbjct: 268 GEGFDWRMSLRDGDAVHDVALHVPGAHNLLNAAGVYTALVHGFGLAPADVARGLGAF--- 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-------G 376
            G  +R+      G   ++D+ Y  NP  + A +   + +    +G  I +         
Sbjct: 325 RGTSRRFEPRGEAGGVRVVDD-YAHNPGKLDALVRTAAGLK--DDGELIVIFQPHLYSRT 381

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
                G  +     D A VL +Y      ++G     + D +  S    ++ T D     
Sbjct: 382 QHAATGLAAALDGADHAFVLDVYGAREQPVAGVSGALITDRM-TSGRGEFTPTADDALAR 440

Query: 437 IQSSLVDGDVVVVKSSNSC 455
           +      GD+VV   +   
Sbjct: 441 VLDVARPGDLVVTVGAGDV 459


>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
 gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
          Length = 467

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 132/343 (38%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  DV+  + E
Sbjct: 134 DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP-----ALDLISPDVELYVLE 188

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 189 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 242 AYD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 294 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 351 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 400 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|184153839|ref|YP_001842180.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri JCM
           1112]
 gi|183225183|dbj|BAG25700.1| ligase [Lactobacillus reuteri JCM 1112]
          Length = 441

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 138/387 (35%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L+            T I I G+ GKT+T  +L+  L++++ T   IG          
Sbjct: 94  LKILSYPEAVENEVKNHTSIGIAGAHGKTSTTALLSHVLAAVEPTSYLIGDG-------- 145

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            + +   D  F +FE        + +      P  A++T +   H   F+ + ++  +  
Sbjct: 146 -VGKGNADARFFVFEADEYRDHFLAY-----HPDYAIMTNVDFDHPDYFNDLADVRDSFE 199

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + +++   IF   DD     L           +Y +G + + DF+    ++  E S 
Sbjct: 200 TYGKQVQR--AIFAWGDDPSLRDLNVDV------PVYYYGTNPDDDFRAENIQRTPEGST 251

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +   + + +     H  G H   N L  L +  +   ++D   + L+ F   +    R 
Sbjct: 252 YDAYFRDQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVK----RR 307

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +    T+ID+ Y  +P+ +KA I    Q  P  E   IAV            ++  
Sbjct: 308 FSETDIADTTIIDD-YAHHPSEIKATIDAARQKYPDRE--VIAVF--QPHTYSRLAAYID 362

Query: 391 DLAEVLSLYN---ISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             AE LS  +   ++ ++      +G    A  +           +TMD L  +      
Sbjct: 363 GFAESLSRADKTFVTPIFGSIRENAGNVSSADLEQRIDGSEGIDMDTMDKLLQY------ 416

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
              VVV   +        +    E++ 
Sbjct: 417 HNAVVVFMGAGD------VEKYEEKYK 437


>gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis
           str. MC2 155]
 gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 482

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 138/405 (34%), Gaps = 40/405 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL  L          +  T + +TG+ GKTTT  M
Sbjct: 82  AAIPKTNPELVEARKRGIPVILRPVVLAKL---------MTGYTTLMVTGTHGKTTTTSM 132

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L +AL       ++A  G            A        G   +  +   +   L +   
Sbjct: 133 LIVALQHSGFDPSFAVGGELGE--------AGTNAHHGSGTTFVAEADESDGSLLEYT-- 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++AV+T I   HL  F   +   +      E +   G + +  DD     L  ++ ALG
Sbjct: 183 PNVAVVTNIEADHLDFFGSEQAYTAVFDSFVERIAPGGALVVCTDDPGAAALADRTDALG 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV--VHHGIGYHMAQNMLMTLG 301
           I+ +       N    L  W+Q    +   ++L G+           G HMA N L  L 
Sbjct: 243 IRVLRYGSTGDNLAGTLLSWEQQGTGAVAHIRLAGEHNPRAVRLSVPGRHMALNALAALL 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               + A  D+ +  L+ F   EG  +R+          + D+ Y  +P  ++A +    
Sbjct: 303 AAREIGAPTDSVLDGLAGF---EGVRRRFELVGTAAGARVFDD-YAHHPTEVRATLEAAR 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVL 412
            +     GR   V+     +   + +F  +            VL +Y      ++G    
Sbjct: 359 TVVDQNGGR--VVVAFQPHLYSRTATFAHEFGAALSVADQVVVLDVYAAREQPMAGVSGA 416

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            + D +  +  V Y      +   + S    GDV++   +     
Sbjct: 417 TVADHV--TAPVTYVPDFSAVAAHVASIARSGDVILTMGAGDVTM 459


>gi|288925518|ref|ZP_06419451.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
 gi|288337734|gb|EFC76087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
          Length = 443

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 120/357 (33%), Gaps = 32/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  AAR      +  ITGS GKTTT  ++     +        G+    + + +   
Sbjct: 90  ISEIEFAARYTHSKMVC-ITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIGKSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                 ++ I EL    L  +    +  R +IA++  I P HL  +   ++    AK  I
Sbjct: 146 -AEDPHEYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDNCMQNYVDAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +      +     DD   +    K     +K  +S  K K +   + + +   E+    
Sbjct: 201 LQNQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEEGEYKIEK---- 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L      +I     +   K+L  F   E    R    
Sbjct: 257 -PTPFNMEQEELSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +   A+  +           I +LG     G+   + +  + 
Sbjct: 313 CKVGGVQYINDSKATNVDACWYALESMKN-------PTILILG-----GKDKGNDYNQIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E++    +  V+L G     L D      I V  + +M             GD V++
Sbjct: 361 ELVKKKCVGLVYL-GADNKKLHDNFDALGIPVRDTHSMKDCVAACYEMARPGDTVLL 416


>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 452

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 115/349 (32%), Gaps = 36/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA  I ITGS GKTTT  ++   L       A +G+    + + +       D ++ + 
Sbjct: 108 TKAKTICITGSNGKTTTATLIYYILKYAGFDVALVGNVGKSLAMQV----AEKDCNYYVI 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  +    +  +  IAV+  I   HL      I+   ++K  I +   K     
Sbjct: 164 ELSSFQLDGM----YHFKADIAVLLNITSDHLDCYEYEIQNYINSKMRIIQNQTKNDIFI 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV- 283
              DD    + +         T Y F + K         K  +E   ++V+       + 
Sbjct: 220 YWSDD--LVIAREIQKMKPTVTFYPFSEQKQ-----VGVKAYTENGNIKVETANGMFSMP 272

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L    +  +L    +    +   F   E    R     +      
Sbjct: 273 QKYLVLRGKHNLYNSLAATAVAKLLGVKDEMLEHSFLNFKAIE---HRMEKVAHIKGVDY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S    +  +           I +LG + +  + S+       E L     
Sbjct: 330 INDSKATNVNSCFYVLQSMRT-------PIILILGGVDKGNDYSE------IEGLVREKC 376

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L D     ++V Y  ++M     +      +GD V++
Sbjct: 377 RALIFLGVDNSKLHDFFDGKVNVIYDVDSMKKAIQYAYKIAQEGDTVLL 425


>gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolinella succinogenes DSM 1740]
 gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE
           [Wolinella succinogenes]
          Length = 434

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 146/456 (32%), Gaps = 89/456 (19%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q  V  IS DSR   P+ AF   +        +   A +KG  L +   D+         
Sbjct: 7   QDEVEFISDDSRECTPKSAFLLTQSSRV----YEAAAREKGCKLFLEPKDLHR------- 55

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
                               L++   +I +TG+ GKTTT   +   L  +    A +G+ 
Sbjct: 56  -------------------FLKTDIPLIGVTGTNGKTTTSAAIYSILLDLGYKVALLGTR 96

Query: 143 ---YNNHIGVPLTLARMP-------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               N+ +  P  L   P                DF + E+    + + R     +   +
Sbjct: 97  GFFMNDELIEPKGLTTPPLLELYERIDRAKRAGCDFFVMEVSSHAIDQKRI--EGLNFAL 154

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T I   HL     +E     K   F+         +N D+S             ++ 
Sbjct: 155 KILTNITSDHLDYHKSLEHYIQTKNSFFDDSTPK---LINKDES--------KAKFNLQN 203

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-GIVSI 305
             S+G    + + ++ +          +    K   +     G H   N+L  +  +  +
Sbjct: 204 ALSYGIEHPSSYHVKAYSLHG-GIEARIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRL 262

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  ++         F   EGR +R           L+   +      M+          P
Sbjct: 263 IGGELQEICDMAERFGGVEGRMERV------SEEPLVVVDFAHTEDGMRQIFESF----P 312

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPR 420
           H E   I VL      G+  +S    +  V   Y    ++L+  +  +     + + + +
Sbjct: 313 HQE---IVVL--FGAGGDRDRSKRPKMGAVADRY-AKRIYLTSDNPRSEDPLLIIEEIEK 366

Query: 421 SIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            IH     V   + +  +   ++  L   +V+++  
Sbjct: 367 GIHHCQKCVKEPDRVQAIRRAVKE-LEAQEVLLILG 401


>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
 gi|169292202|gb|EDS74335.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
          Length = 452

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 128/360 (35%), Gaps = 44/360 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLAR 155
           ++ +A ++  K   I +TG+ GKTTT  ++   L    +     G+    +  + L    
Sbjct: 97  EIELAYQVAKKQHYIGVTGTNGKTTTVTLIDKILKGQYQNVHLAGNVGMPLCDIVLDHNL 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  + + E+    L +I       +P+++ I  + P HL   + ++E  ++K  I++
Sbjct: 157 LEEENHYIVIEMSNFQLLDIDTF----KPNVSTIINLTPDHLDYMASLDEYYASKTNIYK 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K     +N DD   +    K + +  K I +      AD  ++  K    Q+   + 
Sbjct: 213 NTNKNDCFVVNLDDQVLDKYL-KQYPIPCKQI-TMSLDNQADCMIKD-KAIYYQNEFIID 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L           +G H  QN+++ + I        +   + ++ F   E    R      
Sbjct: 270 LDD------IKLVGNHNLQNIMIAICIAKKCDVKNEIINQEIASFIGVE---HRIEFVKE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFH 389
                + ++S   N  +   A+    Q         I ++G      D+ EM   S    
Sbjct: 321 INGIKIYNDSKATNTDASIIALKAFKQ-------PVILLMGGFDKGLDLKEMSTYS---- 369

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      I  +   G      KD +     +      +     I ++   GD+V++
Sbjct: 370 ---------NKIKRLVTFGAAGKRFKDEMHVENSICVKNLKEATLEAI-NNATAGDIVLL 419


>gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
 gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
          Length = 599

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 154/473 (32%), Gaps = 57/473 (12%)

Query: 7   FHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              L +A I  H  G  P   V G+S+DSR + P + + A+ G H  G  F   A++ GA
Sbjct: 48  AQALAEAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGA 107

Query: 66  GLVV---VNTDMVASIGSLSIPVFGVDDVLGAL---NKLAVAARLRSKATIIAITGSVGK 119
             V+       ++A  G    PV  VD V  A              +   ++ +TG+ GK
Sbjct: 108 VGVLTDAAGRALLAGQGLADAPVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGK 167

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLTL-------------ARMPVDVDFG 163
           TTT  +    L ++ +    +G+         VP TL                  +VD  
Sbjct: 168 TTTSFLAAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTA 227

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    +   R     +R  +A  T +   HL     ++E  +AKA +F+   +T   
Sbjct: 228 VMEVSSHAVAYQRI--AGLRYAVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDP-ARTDHA 284

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSK---------------NADFQLRKWKQCSE 268
            +  D                  + +                     AD+++ +      
Sbjct: 285 VITLDGGEGPRWGVAMARAAGAPVTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGL 344

Query: 269 QSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                ++    G+ +       G     N    L ++ +L A  +  + AL+        
Sbjct: 345 GHRFTLRHAATGRELRASVGLPGRFNVAN--AALAVLLVLHAVGEEHLDALAAVLDVPAG 402

Query: 327 GKRYRCALNQ-----GFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMC 379
                 A+       G        +  NP  M  A+  L  ++ +    GR + V G   
Sbjct: 403 EGPLAAAVPGRMEVVGREPDAVVDFAHNPDGMVQALRSLADARAAAGMRGRTLIVFGS-- 460

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
             G+  +     +  + +      V +        +D  P   H+      + 
Sbjct: 461 -AGDRDRDKRPVMGAIAARAA--DVVIVTDDTPHSEDPAPIRAHILAGARAEA 510


>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254766033|sp|C1F460|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 461

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 142/401 (35%), Gaps = 43/401 (10%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPV-----FGVDDV-LGALNKLAVAARLRSKATIIAI 113
           AV+ G   ++        + S  +P+       V    L  + ++ +AAR   K   +AI
Sbjct: 55  AVEAGGHGLLTFRRQDLIVVSPGVPLDTPELVQVRKFGLPIIGEVELAARF-LKGKTLAI 113

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTT  +    L    +     G+    +   +  +R   D  + + E+    L 
Sbjct: 114 TGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPVIALVDDSR---DDGWSVLEISSFQL- 169

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                T   RP IAVI  I P HL      E   +AK  IF        + LN      +
Sbjct: 170 ---ETTERFRPGIAVILNITPDHLDRHGSFENYVAAKERIFAAQTHDDALILNA----DD 222

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----- 288
              +++ A     I+ F +++     +R+     E + +    +  + E +         
Sbjct: 223 DAASRAAARASSRIFWFSRNR----VIRQGAFVHEGNILFRAAEDAATEPILPLSEIPLK 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+L  +    +     +    A+  F   E    R       G  +  ++S   
Sbjct: 279 GAHNVENVLAAVCAARLAGVSAEAIRDAVRDFRAVE---HRLEFVAEIGGVSFYNDSKAT 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + + AI           G    +LG     G+   S +  L   L    +  V+  G
Sbjct: 336 NVDAARKAIEAF-------PGGIHLILG-----GKDKNSDYRTL-RPLMAGRVKAVYTIG 382

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +   L  ++ +  + T+D        +   GDVV++
Sbjct: 383 SAAEKIMTHLDGAVPLIAAGTLDLAVNLAGGAASPGDVVLL 423


>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 450

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|203284712|ref|YP_002222452.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|203284717|ref|YP_002222457.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084155|gb|ACH93746.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084160|gb|ACH93751.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
          Length = 486

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 139/396 (35%), Gaps = 45/396 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L IPV    +V+G ++K             I + GS GKTTT       L  +  +
Sbjct: 110 EAYELGIPVLSYPEVIGEISKKYY---------SIGVAGSHGKTTT----AAFLGILFHS 156

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                +    I               G   + ++   E +       P I V+T I   H
Sbjct: 157 LGLQPNL---ILGSSVKNLEDKSSLVGESNVFIAETCEYKGHFLSFSPDIIVLTNIDYEH 213

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   EE+     +    L+K G + +N D+S    +K K     I+ ++S G +  +
Sbjct: 214 VDFFKNYEEVEDIFLQYVNNLKKNGILIINADESNLFNIKNKIIRKDIR-VFSVGFNSLS 272

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           DF++  ++        +      S+++       H   N  + L  + +   +    +  
Sbjct: 273 DFKIEHFEIGDGFLKFDFL---GSIDIRLKTPLIHNVLNFSVALLALKLFLEEHKKLVWN 329

Query: 317 L-----SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                  V     G  +R    + +     +D+ Y  +P  +++    L  +    +GRR
Sbjct: 330 FDERIKIVAREYMGIKRRMEFIMEKDGVIYLDD-YAHHPKEIES---TLLGLKKFYDGRR 385

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----------- 420
           I VL  M      ++    +   VLS  N+  + L   ++   +D  P+           
Sbjct: 386 I-VLDFMPHTFTRTKVLFDEFVRVLS--NVDVLILHNIYLSVREDFDPKRLSRDLFLSLR 442

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             + +V++   +     FI+  L   D+ V   +  
Sbjct: 443 DLNQNVYFFAEIGDSVDFIKGLLKRNDLFVTMGAGD 478


>gi|319949906|ref|ZP_08023908.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
 gi|319436430|gb|EFV91548.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
          Length = 487

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 135/411 (32%), Gaps = 44/411 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +  +  +PV     VLG L +             I + G+ GKT+T  M
Sbjct: 87  AAIPADNPELVAARAAGVPVVTRSQVLGHLARA---------GRSIMVCGTHGKTSTTSM 137

Query: 126 -LTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +   LS+    ++A  G+         T AR   D    + E   S    + +      
Sbjct: 138 LIAGMLSAGSDPSFAVGGTVLQ----FGTNARGGAD-PVFVAEADESDGSLVHY-----E 187

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHAL 242
           P + ++T   P HL +F   E            +  TG + +  DD    E  +  + A 
Sbjct: 188 PDVVILTNAEPDHLDHFGTAEAYYEVFDTFLARIPDTGALVVCVDDEGAAERARRAAAAG 247

Query: 243 GIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNML 297
                Y        D     +L      S+ +   + L G S   +H G  G HMA N L
Sbjct: 248 VRVVGYRTADGPTTDLPVAGELAGITVDSDGTRARLTLDGGSHGDLHVGTPGEHMALNAL 307

Query: 298 MTLG----IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
             L     +      D D  +  LS F     R +    A+       + + Y  +P  +
Sbjct: 308 AALLAAREVAGAGGFDADGFLAGLSGFGGVGRRFEPKGEAVVGEGRARVYDDYAHHPTEV 367

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHV 404
            A +    +I     GR +AV      +   ++ F  +            VL +Y     
Sbjct: 368 AAVLGAAREIVEADGGRLVAVF--QPHLYSRTRIFAEEFGRALSLADEVVVLDVYGARER 425

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              G     +   +  +  VH+   +D     +   L  GDVV    +   
Sbjct: 426 PEPGVDGGLIARNVTAA--VHHVPDLDSALTTVTGILRPGDVVFTLGAGDI 474


>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
          Length = 450

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 127/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAASE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +         
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSSFGGVK---HRLQFVDEIQGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  +  +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|296327764|ref|ZP_06870303.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155111|gb|EFG95889.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 468

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 28/321 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+ +T +  S   LS   +  ++ +  L +  + A+L ++ T IA+ G+ GKTTT
Sbjct: 67  KGADYVIASTAIKESNPELS---YAKNNGIEILKRGELLAKLLNRETGIAVAGTHGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ML+  + S   T          I V   L  +  +   G  E  ++   E       +
Sbjct: 124 SSMLSAVMLSKDPT----------IVVGGILPEIKSNAKPGKSEYFIAEADESDNSFLFM 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  AVIT I   HL     ++ I  +  +     +K     +  D    + +   +   
Sbjct: 174 NPKYAVITNIDADHLDVHGNLDNIKKSFIKFICHTQKE--AIICLDCENLKEVV--TRLP 229

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             KT+ ++  K ++A+   +  K    ++  E+ +  + + E   +  G H  QN L  +
Sbjct: 230 EEKTVTTYSIKDESANVFAKNIKIEDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVI 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------TLIDESYNANPASMK 354
            +        +   +AL+ F   + R         +  +        I + Y  +P  +K
Sbjct: 290 YLAFKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIK 349

Query: 355 AAISVLSQISPHGEGRRIAVL 375
           A +  +  I      R +A+ 
Sbjct: 350 ATLKAIKSIDTS---RLVAIF 367


>gi|306832975|ref|ZP_07466107.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
 gi|304424874|gb|EFM28008.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
          Length = 452

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 136/381 (35%), Gaps = 50/381 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            MVA     +IPV         L  +  AA       II ITGS GKTTT  M+   L++
Sbjct: 88  PMVARAIEKNIPVI----TEVELAYMISAA------PIIGITGSNGKTTTTTMIAETLNN 137

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             K+    G+          +A+   D D  + EL    L      T    PHIA+IT +
Sbjct: 138 GGKSGLLSGNIGFP---ASEVAQTATDKDILVMELSSFQLMG----TDTFHPHIAIITNL 190

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H+      EE  +AK  I + +     + LN++    + L  K+ A     +  F  
Sbjct: 191 MPTHIDYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTAA----QVVPFST 246

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           +K  D                +  +G+++         G H  +N L T+ +  +     
Sbjct: 247 TKKVDGAYLDGD--------TLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIAN 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   + L+ F   +    R +           ++S + N  + + A+S           +
Sbjct: 299 DAIKETLTHFGGVK---HRLQALGEINGVKFYNDSKSTNILATQKALSGFD------NSK 349

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-- 428
            I + G   + G        D+        +  + + G     +K A  ++ +V Y +  
Sbjct: 350 VILIAGG-LDRGNEFDELVPDI------TGVKLIVILGESAPRVKRAADKA-NVPYVDAK 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 402 DVADAARIAYDKAEAGDVVLL 422


>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
          Length = 450

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
 gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
          Length = 450

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGEHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|57242128|ref|ZP_00370068.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
 gi|57017320|gb|EAL54101.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
          Length = 477

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 134/368 (36%), Gaps = 42/368 (11%)

Query: 90  DVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           D+L A   L  A       +  TII IT S GKT+ K  L   L     T+    S N  
Sbjct: 136 DLLQARYFLKKAKHKILKNNHLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTL 195

Query: 147 IGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +G+   +   +  +    I E G    G+I  L+  + P I +I  I  AHL  F  IE 
Sbjct: 196 MGIVKDINENLQENTQIYIAEAGARVKGDILELSSFLEPQICIIGEIGGAHLEYFKNIEN 255

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLR 261
               K                      E L++K          +  K ++     D  L 
Sbjct: 256 TRETK---------------------LEALQSKRLKQSFLHSSTLKKDESNITIYDNLLL 294

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +          ++L  K        +G   A+N+   +   + L   ++T  K ++   
Sbjct: 295 NFNANLNGIDFSLRLNDKEEFFQSSILGAFNAENLCACVCCANYLGIKLETIKKQIANLK 354

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             E R +     +++    +ID+ +N N   M  +      ++   +GRR+ V   + E 
Sbjct: 355 AVEHRLQ----IISKEPKFIIDDGFNGNFKGMSES----YHLAKSYQGRRVLVTPGIIEG 406

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
              S+  +  LA++++  +   V +S  H+ A        I+    +    L   +    
Sbjct: 407 ---SEEDNKKLAKIINE-SFDLVIIS-AHINATLFEKELKINKIILKEKAKLVEILAKHT 461

Query: 442 VDGDVVVV 449
            +GD+++ 
Sbjct: 462 KNGDLILF 469


>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
 gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV200]
 gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
          Length = 450

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 131/393 (33%), Gaps = 42/393 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKT 120
           A LVV +  +  +      P    +    A    +  + +    ++   ++A+TG+ GK+
Sbjct: 66  ADLVVWSPGIPHTHPQ---PHAIAEKARAANVPVVCDVELLGLAKAGTRMLAVTGTNGKS 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +L   L+      A  G+        L L  +P D  + + EL    L     LTH
Sbjct: 123 TTTTLLAHVLAECGLPVAAGGNLGT---AALDLPELPGDGRY-VLELSSYQL----ELTH 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++   A++  I P HL    G+    +AK  +F+ L   G   +  DD     + A+  
Sbjct: 175 SLKLGAAILLNITPDHLGRHGGMNGYIAAKRRVFDFLTPGGAAVIGVDDGPCRAIAAELE 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G++ +    +S      L +     +   ++       ++ +    G H  QN     
Sbjct: 235 RRGLRVVKISVES-----VLTEGVSAPDGVLLDNGKPVTDLKEIPSLPGSHNWQNACAVY 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                          ALS +    G   R            I++S   N  +++ A+   
Sbjct: 290 AAARAEGLSPKDIAAALSTY---PGLAHRQELVGEDHGIAWINDSKATNADAVEKALVCY 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             I          + G   E G  S   H           I H +L G    A    L  
Sbjct: 347 EHIY-------WILGGQAKEGGIASLERH--FGR------IQHAFLIGEASEAFAATLEG 391

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD----VVVV 449
            +      T+       ++  V  D    VV++
Sbjct: 392 KVRYTRCVTLANAVAAARNLAVSDDIPGAVVLL 424


>gi|288904810|ref|YP_003430032.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
 gi|288731536|emb|CBI13091.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
          Length = 451

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 130/352 (36%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A + S A II ITGS GKTTT  M+   L++  K+    G+          +A+   D D
Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFP---ASEVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T +  PHIAVIT + P H+      EE  +AK  I + +    
Sbjct: 163 ILVMELSSFQLMG----TDIFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K+ A     +  F  ++  D                +  +G+++
Sbjct: 219 FVVLNFNQDLAKELAQKTVA----KVVPFSTTEKVDGAYLDGD--------TLYFKGEAI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +     D   + L+ F   +    R +        
Sbjct: 267 MKASEIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHFGGVK---HRLQALGEINGV 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + N  + + A+S           + I + G   + G        D+       
Sbjct: 324 KFYNDSKSTNILATQKALSGFE------NSKVILIAGG-LDRGNEFDELVPDI------T 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +K A  ++ +V Y +   +             GDVV++
Sbjct: 371 GVKLMVILGESAPRVKRAADKA-NVPYVDAKDVADAARIAYDKAEAGDVVLL 421


>gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
 gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
          Length = 534

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 163/487 (33%), Gaps = 66/487 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +  +    V+G++I +  + P + F A+ G    G  +I  A+  GA  V+ +       
Sbjct: 22  VHAMADAQVSGLAIQTARVRPGDLFVAVAGQRSHGAQYIEQAIHAGARGVLTDEAGYRIA 81

Query: 79  GSLS------IPVFGVD---DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
             L       +PV  VD   DV     ++A     +  ++ T   ITG+ GKTTT   L 
Sbjct: 82  RELDASVGHELPVLVVDDGHDVREIAGQVAATIYGQPAARLTTAGITGTNGKTTTTFFLD 141

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT---------------LARMPVDVDFGIFELGMSHL 172
             L +       +G+    +G                   LAR   +    +     SH 
Sbjct: 142 AILRTAGHHTGLMGTVETRLGDHTVSSTRTTVEAPELQGFLARCLEEEVTAVSMEVSSHA 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +  +T   +  +   T +   HL     + E  +AKA++F   +      +N DD + 
Sbjct: 202 LALHRIT-GTQFDVVGFTNLQRDHLDFHGSMAEYFAAKAQLFHS-DYARAGVINVDDDWG 259

Query: 233 ELLKAKSHALGIKTIYS--FGKSKNADFQLRKWKQCSE--QSWMEVQ-LQGKSMEVVHHG 287
             L  ++         +       +AD+ + +         +   +Q   G+ +      
Sbjct: 260 VQLHHQATIDTWSVATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHGQRLRCHSAL 319

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N  +   +  +     +   + L   H   GR +    +      T++D  Y 
Sbjct: 320 PGTVNVANAALAALMARLAGVSDNNITEGLRSLHSIPGRMEV--VSKPAQPLTIVD--YA 375

Query: 348 ANPASMKAAISVLSQ------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               ++  A+S L Q            G    V G     G+   S   ++  V +    
Sbjct: 376 HTAEALDFALSSLRQDLAARAHESGTHGVLRVVCGA---AGDRDPSKRPEMGAVAARL-A 431

Query: 402 SHVWLS------------------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442
             V+++                  G    A + A   R I V   +  +     + ++  
Sbjct: 432 DVVYIADDDPHGEDRATIRQDLLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAAAS 491

Query: 443 DGDVVVV 449
           DGD++++
Sbjct: 492 DGDIILI 498


>gi|19704788|ref|NP_604350.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|25008802|sp|Q8RDQ2|MURC_FUSNN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19715125|gb|AAL95649.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 468

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 28/321 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+ +T +  S   LS   +  ++ +  L +  + A+L ++ T IA+ G+ GKTTT
Sbjct: 67  KGADYVIASTAIKESNPELS---YAKNNGIEILKRGELLAKLLNRETGIAVAGTHGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ML+  + S   T          I V   L  +  +   G  E  ++   E       +
Sbjct: 124 SSMLSAVMLSKDPT----------IVVGGILPEIKSNAKPGKSEYFIAEADESDNSFLFM 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  AVIT I   HL     ++ I  +  +     +K     +  D    + +   +   
Sbjct: 174 NPKYAVITNIDADHLDVHGNLDNIKKSFIKFICHTQKE--AIICLDCENLKEVV--TRLP 229

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             KT+ ++  K ++A+   +  K    ++  E+ +  + + E   +  G H  QN L  +
Sbjct: 230 EEKTVTTYSIKDESANIFAKNIKIEDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVI 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------TLIDESYNANPASMK 354
            +        +   +AL+ F   + R         +  +        I + Y  +P  +K
Sbjct: 290 YLAFKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIK 349

Query: 355 AAISVLSQISPHGEGRRIAVL 375
           A +  +  I      R +A+ 
Sbjct: 350 ATLKAIKSIDTS---RLVAIF 367


>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae P1031]
 gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae 70585]
 gi|254766057|sp|C1C648|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766061|sp|C1CJF2|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 70585]
 gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae P1031]
 gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV104]
 gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47901]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 146/400 (36%), Gaps = 43/400 (10%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA------LNKLAVAARLRSKATIIAIT 114
           V+ G   ++        + S  +P+   +    A      + +L +A+R     ++IAIT
Sbjct: 56  VESGGHGLLTFRRQDLIVVSPGVPLETPEIAQAAAFGTAVIGELELASRF-LDGSVIAIT 114

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTT  +     +         G+    +   +  +R      + + E+    L  
Sbjct: 115 GSNGKTTTTTLTGKIFADAALPTLVGGNIGLPVIDLIAESR---PETWSVLEVSSFQL-- 169

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   +P IA++  + P HL      E    AKA I    E    + LN +D   + 
Sbjct: 170 --ETATTFKPRIAMVLNVTPDHLDRHKTFERYWEAKARITACQESEDFLILNAEDVNAQK 227

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-----GIG 289
           + AK+ A     IY F   +    Q+++      +S   +  +G   E V         G
Sbjct: 228 MAAKTRA----QIYWFSGRR----QVKQGAFVHGESVFFLGKEGGKPEPVLPVSEIALKG 279

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N+L  +    +   D +T   A+  F   E R +  R    +      ++S   N
Sbjct: 280 AHNVENVLAAVCAARLAGIDAETIRAAVKGFRAVEHRLELVRV---RNGVEFYNDSKATN 336

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +   A+   +       G    +LG     G+   S +  L+ +L    +  V+  G 
Sbjct: 337 VDATVKAVESFA-------GGIHLILG-----GKDKDSDYATLSALLKER-VRVVYTIGS 383

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++  L   + +  + T+D        + V  ++V++
Sbjct: 384 AAEKIERQLDGVVKIVQAGTLDKAVKLAAEAAVSDEIVLL 423


>gi|304314889|ref|YP_003850036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588348|gb|ADL58723.1| predicted UDP-N-acetylmuramyl tripeptide synthase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 469

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 141/430 (32%), Gaps = 53/430 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAIT 114
           I  A ++G   ++       +   L +P+  VD  ++  AL       R  S +  IA+T
Sbjct: 47  IQIASERGVAAIITQDLRSDASKVLDVPIILVDRIEIANALALSWTINRFASSSRRIAVT 106

Query: 115 GSVGKTTTKEMLTIALSSIKKTYAC------IGSYNNHIGVPLTLARMP--VDVDFGIFE 166
           G+ GK+TT  M+   +++  ++           +      V   +A       ++F + E
Sbjct: 107 GTNGKSTTTHMINHIITTAGRSSYTNTDSRSEFNTLIDPVVAQHIAEAASREQLEFMVIE 166

Query: 167 LGMSH-------LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +               + +T  ++P + VIT +A  H+     ++++    +     ++ 
Sbjct: 167 VSEVQGWLGRVMRDHAQLMTSAIQPEMVVITNVAMDHIGLVESVDDVFREVSGALRAMD- 225

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +G   LN DD     +   +  L       +G      +         +   + +Q    
Sbjct: 226 SGVAVLNSDDERVRAMADINPLL---RTVFYGSHGPVRYTGNGIHCGDD---LIIQTDE- 278

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  QN L  +     L    +   + +  +   + R             
Sbjct: 279 -----LPFTGEHFIQNTLAAITAALELGFSYEDVRRGVETYRALKRRFTHLM------DN 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSL 398
             + + +  NP  ++A    +   +   +GR   V       GE     + + LAE L  
Sbjct: 328 PRVIDDFAHNPDGIRA---TVRSAACDLKGRLWVVNAIRGSRGEDINIMNAEALAESLKD 384

Query: 399 YNISHVWLSGFHVLALKDAL-------------PRSIHVHYSETMDGLFLFIQSSLVDGD 445
            ++  +  S   ++  ++ +                I   + E +      +  +    D
Sbjct: 385 LDVELIVTSSSDLVDEQNRVLENERRVFLHVLDENGIGYTHIENLRDALRRVLENAEPSD 444

Query: 446 VVVVKSSNSC 455
            V++  +   
Sbjct: 445 TVLLLGAQGM 454


>gi|229916435|ref|YP_002885081.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sp. AT1b]
 gi|259509772|sp|C4L4P1|MURC_EXISA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229467864|gb|ACQ69636.1| UDP-N-acetylmuramate/alanine ligase [Exiguobacterium sp. AT1b]
          Length = 435

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 125/373 (33%), Gaps = 59/373 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T +AITGS GKT+T  +L   +  I+ T   IG                 D    +FE  
Sbjct: 102 TSVAITGSHGKTSTTGLLAHVMRGIEPTSFLIGDGTGEGV---------ADSKNFVFEA- 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E +      RP  A++T I   H   FSG++++  A  E+ + ++K   I    D
Sbjct: 152 ----CEYKRHFLYYRPDYAIMTNIDFDHSDYFSGLDDVIDAFQEMAKQVKKG--IIACGD 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + ++A         +  +G   + DF+  +       +  +V L+          G
Sbjct: 206 DENLQQIQANV------PLVYYGFGAHNDFRAEQVTSTENGTTFDVFLRDDFYGTFRIPG 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +          +   + L  F+  +    R           L+D+ Y 
Sbjct: 260 YGDHSVLNALAVIATCDYENLPKELVKERLETFNGVK----RRFSESTLNDQVLVDD-YA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  + A +        +G    +A+           +SF  D A  L+      V+L 
Sbjct: 315 HHPREISATVEAAR--KKYGNREVVAIF--QPHTYTRLKSFMDDFATALAE--ADTVYLC 368

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDG----------DVVVVKSSNSC 455
                   D    +     + T++ L   I+    L  G           V++   +   
Sbjct: 369 --------DIFGSAREQEGTVTIEDLQSRIEGAHILKRGGTGVLRNHADAVLLFMGAGDI 420

Query: 456 G-----FYRLINL 463
                 +  ++ L
Sbjct: 421 QTYQREYEEVVKL 433


>gi|257452943|ref|ZP_05618242.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059484|ref|ZP_07923969.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685160|gb|EFS21995.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 129/369 (34%), Gaps = 38/369 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  + S+  T          I V   L  +  +   G+ E  ++
Sbjct: 104 IAVAGTHGKTTTSSMMSAVMLSLDPT----------IVVGGILPEIGSNAKVGMGEYFIA 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       ++P  AV+T I   HL     +E I  +  +  E  E+   + +  D +
Sbjct: 154 EADESDNSFLFMKPKYAVVTNIEEDHLETHGNLENIEKSFRQFVEQTERK--VLVCTDCA 211

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               + ++S       I ++G    A+   +  +  + ++  EV +QG+S         G
Sbjct: 212 NVRTVFSESE-----KIMTYGMDYEANIMAKNVEIVNGKTSFEVLIQGESQGRFYISIPG 266

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +    +     +       + H +  + +      +Q     I + Y  +
Sbjct: 267 KHNILNSLPVIYFSLLFGVPKEEIQ--DKLLHFRGSKRRYDVLYWDQENNRKIIDDYAHH 324

Query: 350 PASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P  ++A +  +             PH   R   +L       E           +L +Y+
Sbjct: 325 PTEIQATLKGVKSIEKGKIIGIFQPHRYSRVHFLLERFAHCFEGLDEL-----ILLPIYS 379

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSC-GFY 458
                 SG     +   +P +I V   E+ + +   I     + + + +   +       
Sbjct: 380 AGEQNESGVSEKDIAKIIP-TIPVTCIESKERVVERIMEETREDNHIFIFMGAGDISKLA 438

Query: 459 -RLINLLLE 466
             + + L +
Sbjct: 439 HEVADRLQK 447


>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
          Length = 438

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 129/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        LTL + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQVGTGGNIGLP---ALTLLQQPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L         +    A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETASSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAT---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG    AD       +    +W+ VQ +     
Sbjct: 209 CVVNADDAMTMPVRGADA-----RCVSFG----ADVGDYHLTRQQGSTWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     T++KAL+ F+    R +R            I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRV---HEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    I 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HPAGMLWLLLGGDGKSADFSP-----LTRYLQGDRI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L  AL   + V  +ETM      I + +  GD+V++
Sbjct: 366 RIYCFGRDGAELA-ALRPEVAVQ-TETMAEAVQQIATQVQPGDLVLL 410


>gi|163841228|ref|YP_001625633.1| UDP-N-acetylmuramate--L-alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
 gi|189029025|sp|A9WRD7|MURC_RENSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|162954704|gb|ABY24219.1| UDP-N-acetylmuramate--alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 465

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 148/403 (36%), Gaps = 35/403 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VV++T + A+   L    F     L  L++    A   ++ T++A+ G+ GKTTT
Sbjct: 66  AGADTVVISTAIRANNPELE---FARTQGLRVLHRSEALAAAMAQDTVVAVAGTHGKTTT 122

Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             M+ + L       ++A  G+             +      G   +  +   +  FL +
Sbjct: 123 TAMIAVLLREAGLDPSFAVGGTVPA--------LGVNAAHGAGGIFVAEADESDGSFLNY 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP IAV+T   P HL ++   E +  A       +   G +    DD     L  ++ 
Sbjct: 175 --RPQIAVVTNAEPDHLDHYGTAEAVMEAFQSFIGLIPADGLLVACTDDDGALALAKQAA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G + + ++G+S  A+  L               +  + + +     G H A N L   
Sbjct: 233 ARGTR-VVTYGRSAAAEVWLIN-DGAHRAIEFITPIGPQRLVLELQVPGEHNALNALAAF 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  + + A+ AL+ F    G  +R+          + D+ Y  +P  ++AA++  
Sbjct: 291 AVALELGVEAEQALSALAGFT---GAARRFEFKGQVRGIRVFDD-YAHHPTEVRAALTAA 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGEL--------SQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             ++   +G  + VL                 +     D   VL +Y      + G    
Sbjct: 347 RTVA---DGHHVLVLFQPHLFSRTHEFAAEFAAALSLADSIMVLDVYPAREDPIPGVTGE 403

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            + +A   +  + +          + +   +GD+V+   +   
Sbjct: 404 LITEA---NAKLTFQPDRAKAIQELVARTANGDIVLTVGAGDV 443


>gi|163787491|ref|ZP_02181938.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriales bacterium
           ALC-1]
 gi|159877379|gb|EDP71436.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 142/390 (36%), Gaps = 46/390 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D     L + AV  ++  + T +AI G+ GKTTT  +L   L+        + ++   I 
Sbjct: 93  DSNFKVLKRSAVLGKITKQTTCLAIAGTHGKTTTTSILGHLLNECN---VSMTAFLGGIS 149

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                  +    D  + E       E       + P IA IT++   HL  +    E+  
Sbjct: 150 ENYNSNLILNGTDVTVVEA-----DEFDRSFLTLSPDIACITSMDADHLDIYGDASELIK 204

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           +  +  E ++  G +F+              + L ++ I ++G   ++D+  +  K  + 
Sbjct: 205 SFKDFTECIKPNGKLFV-------------RNGLPLEGI-TYGIEDDSDYSAQNVKIKNG 250

Query: 269 QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               ++Q       +   +  G H   N ++ L +        +   K L+ +   +   
Sbjct: 251 SYVFDMQTPDGIYKDFQFNLPGRHNLSNAIIALAMAVDFGCPYNQLAKGLASYKGVK--- 307

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R+   +    F  ID+ Y  +P  + A    + ++ P  + + +AV      +   ++ 
Sbjct: 308 RRFTYQIKTEDFVFIDD-YAHHPEEINAVHQAVREMYP--DRKVLAVF--QPHLYTRTRD 362

Query: 388 FHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
           F    AE         +L +Y    + + G     + + +  S      ++   L   I+
Sbjct: 363 FIDGFAESLSKFDELLLLDIYPARELPIEGVTSSWILNKVENSSKKLIQKS--ELIDEIK 420

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            S  D  VV+   +   G    +  + E F
Sbjct: 421 KS--DAQVVLTIGAGDIGEE--VKYIKEVF 446


>gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M04-240196]
          Length = 445

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +      + +         V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTPLRDALVGK------AKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T+        +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
           Ejp617]
          Length = 438

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 130/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        LTL + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQVGTGGNIGLP---ALTLLQQPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAT---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG    AD       +    +W+ VQ +     
Sbjct: 209 CVVNADDAMTMPVRGADA-----RCVSFG----ADVGDYHLTRQQGSTWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     T++KAL+ F+    R +R            I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRV---HEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    I 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HPAGILWLLLGGDGKSADFSP-----LTRYLQGDRI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L  AL   + V  +ETM      I + +  GD+V++
Sbjct: 366 RIYCFGRDGAELA-ALRPEVAVQ-TETMAEAVQQIAARVQPGDLVLL 410


>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
 gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 122/350 (34%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A I+ ITGS GKTTT  M+   L++  +     G+          +A+     D
Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP---ASQVAQTATAKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L  ++ A    T+  F   +  D   L   +       +        
Sbjct: 219 FLVLNFNQDLAKELATRTQA----TVVPFSTLEKVDGAYLEDGQLYFRGEVIMA------ 268

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +   D     + LS F   +    R +         
Sbjct: 269 -ADEIGVPGSHNVENALATIAVAKLRGIDNQIIKETLSAFGGVK---HRLQFVDEIQGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S           + I + G   + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++   +  +  +             GDVV++
Sbjct: 372 LKRMVILGQSAERVKRAAEKAGVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|237743962|ref|ZP_04574443.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432993|gb|EEO43205.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
          Length = 468

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 140/397 (35%), Gaps = 46/397 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IA+ G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 96  LKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  +VIT I   HL     ++ I  +  +  
Sbjct: 146 EIKSNARPGKSEYFIAEADESDNSFLFMYPKYSVITNIDADHLDVHGNLDNIKKSFIKFI 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D        A S     KT+ ++  K +NA+   +  +    ++  E
Sbjct: 206 CHTQKE--AIICMDCENLRD--AVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFE 261

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H   N L  + +        +   + L  F   + R      
Sbjct: 262 LYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFD 321

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------ 380
              +  +        I + Y  +P  +KA +  +  I       R+ V+           
Sbjct: 322 KDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKSIDKS----RLVVIFQPHRYSRVHF 377

Query: 381 -MGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFI 437
            + E   +F  D+ +V+ L     ++ +G         + L   I+ +  E M+  +  +
Sbjct: 378 LLDEFKDAF-KDVDKVILL----PIYAAGEKNEFNISSEILKEHINHNNVENMNE-WKDV 431

Query: 438 Q---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +   S +      +   +       L + + EE   +
Sbjct: 432 KRYVSRVKKDSTYIFMGAGDI--STLAHQIAEELEGM 466


>gi|329667779|gb|AEB93727.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus johnsonii DPC
           6026]
          Length = 437

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 116/356 (32%), Gaps = 46/356 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   L  +  T   IG             +      F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVEGSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    ++ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTNIPK------YTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + L  F   +    R     + G  ++ID+ Y 
Sbjct: 266 FGDHSILNTTAVIAVAYTEKVPMDDIKEGLLTFKGAK----RRFAEKDFGDVSVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WL 406
            +P  M+A I    Q  P  E   + V          ++ +  D  E+L   + ++V  +
Sbjct: 321 HHPTEMRATIQAARQKFPDKE--LVVVF--QPHTFSRTKKYQKDFEEILRDVDKAYVTPI 376

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 A  D              V   + +  L            VVV   +   
Sbjct: 377 YASAREASGDISSEDLVNNIPGSEVIDLDNIADLTKH------KNAVVVFMGAGDI 426


>gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SS3/4]
          Length = 484

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 142/407 (34%), Gaps = 49/407 (12%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +       V+ +  DSR   P   F  I+G   D H+FI   ++ G  ++VV  ++   
Sbjct: 5   LVCGSLDQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGCKVLVVEKEVEVP 64

Query: 78  IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                + V  V+    AL +L+ A       K   I ITG+ GKTTT  M+   L +  K
Sbjct: 65  AD---VTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGK 121

Query: 136 TYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLT 179
               IG+    I                V     +M     +  + E+    L  +    
Sbjct: 122 KTGLIGTNGAVIGDVKFPTSNTTPESYVVQDYFHKMVEAGCECCVMEVSSQAL--MLHRV 179

Query: 180 HLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLK 236
             +     + T I+P H+        EE    K+ +   L    T  +N   D + E++K
Sbjct: 180 GGIMFDYGLFTNISPDHIGPKEHKSFEEYLFYKSRL---LTVCKTGIVNRLTDHYDEVVK 236

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGK-SMEVVHHGIGYH-- 291
             +       + ++  + NADF        S   +  +E  + G     V     G    
Sbjct: 237 DATC-----RLLTYALNGNADFMGDDIHYASNHDFVGIEFSIHGMLDGRVRVGMPGKFNA 291

Query: 292 ---MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +A   + TL +        D   +A+     K     R   A      ++I + Y  
Sbjct: 292 DNALAALAVCTLALSGGSGVLDDHTKQAILGSLVKVRVDGRMEIAHVSKKCSVIVD-YAH 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           N  SM++ ++ L    P    R + V G     G  ++     + E+
Sbjct: 351 NAVSMESLLTTLRDYHPK---RLVCVFGC---GGNRARDRRYSMGEI 391


>gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus 10329]
          Length = 437

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +   T    G+          L  +  D D  + E
Sbjct: 107 NKPVVAITGSNGKSTVTDLTGVMAKAAGLTVGVGGNIGVP-----ALELLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++ + A    ++  H+  + G+ +  +AK  IF+  E      +N
Sbjct: 162 LSSFQL----ETTSSLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFDNAE---LAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++      + +FG  +    Q    +    ++W+    Q         
Sbjct: 215 RDD-------QETYPEVEMPVVTFGSDE----QAYGLEVDGSRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHNALNA---LKNYTGLTHRCQVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P         TM+ +   I S L  GD+V++
Sbjct: 370 FGLDGD---DFMPLHESAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
 gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
          Length = 443

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 123/356 (34%), Gaps = 30/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    A +I ITGS GKTTT  ++     +        G+    + + +   
Sbjct: 90  ISEIEFAGRYTH-AKMICITGSNGKTTTTSLIYHIFKTAGYDVGLAGNIGRSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ I EL    L  +    +    +IA++  I P HL  +   ++    AK  I
Sbjct: 146 -AEEPHEYYIIELSSFQLDNM----YKFHANIAILLNITPDHLDRYEYCMQHYVDAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   K  +     DD   +    K     +K  +S  K K +   + + +   E+    
Sbjct: 201 IQNQTKQDSFIYWNDDPIIKHELEKYDIHAVKCPFSELKEKGSIGYIEEGQYKIEK---- 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L      +I     D   K+LS F   E    R    
Sbjct: 257 -PTPFNMEQEELSLTGKHNIYNSLAAGIASNISGIKKDIIRKSLSDFPGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +   A+  +           I +LG     G+   + +  + 
Sbjct: 313 CKVGGVQYINDSKATNVDACWYALESMKT-------PTILILG-----GKDKGNDYSSIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E++    +  V+L   +    ++     I V  + +M+            GD V++
Sbjct: 361 ELVRKKCVGLVYLGADNTKLHQNFDSLGIPVRDTHSMEDCVKACYDMAKPGDTVLL 416


>gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 462

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/349 (22%), Positives = 122/349 (34%), Gaps = 38/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +A +I ITGS GKTTT  +L   L   K+ T     + N  I   LT ++     D  + 
Sbjct: 114 QAEVIGITGSNGKTTTTSLLGEILQGAKELTGKTEVAGNIGIP-ALTASQGLSSQDRLVL 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA I  + P HL     IE   +AK  I +       + L
Sbjct: 173 ELSSFQLMGIETF----RPHIAAIIDLYPTHLDYHGSIENYLAAKWRITKNQGPDDYLLL 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSME 282
           NYD         +S A  I         K A      W    E + M   E  L+ +   
Sbjct: 229 NYDQEILWQKAKESSAQIIPISIESELEKGA------WYNEKEGTLMWGSETVLKRED-- 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  QN L+ L I  +L     +   A S FH  +    R +           
Sbjct: 281 --LFLPGKHNVQNALVALAIAKLLGVSNASIQTACSQFHGVK---HRIQFVDQIKERRFY 335

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N    +A+I+ L           +  +    + G   +    +L +V +     
Sbjct: 336 NDSKATN---NEASITALRSFKEP-----LVWIAGGLDRGNGVKELLKELGQVHA----- 382

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G       D   ++    +  ++ ++            GDV+++
Sbjct: 383 -LVAMGETQDKFIDLANKAGISQISVAKNIEEATQAAYRLSQPGDVILL 430


>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 452

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 126/353 (35%), Gaps = 33/353 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+  + AITG+ GKTTT  ++   L S       +G+  N        A    D  
Sbjct: 101 AYQSSRGKLAAITGTNGKTTTVSLVGEILRSHFSDTHVVGNIGNPFTAE---ALETEDSS 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I       RP ++ IT I P HL     ++     K  I     +  
Sbjct: 158 ATVIEVSSFQLETI----MDFRPDVSAITNITPDHLDRHKSMKNYIRIKESIAMNQTEED 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++D        K   L  K ++   + +    F LRK      ++  E +   K 
Sbjct: 214 CVVLNHEDPELRSF-GKGKELKPKVLWFSSERELKEGFFLRKDALFFREAGKEAEELLKV 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E     +G H  +N++  + +   +   +   I     F P E    R      +   +
Sbjct: 273 RE--LKLLGKHNYENVMCAMAVSYRMGVPMRKIISVCKSFRPVE---HRIEFVRKRSGVS 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N   + AAI  L  +     G  I + G            H+D  + +  + 
Sbjct: 328 YYNDSKGTN---VDAAIQALRAMP----GPVILIGGGY--------DKHVDFDDWVKEFK 372

Query: 401 --ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + ++ L G     + +   +    ++ ++E MD       +    GD V++
Sbjct: 373 GRVKYLVLIGQTRSQIANCAKKYGFKNIMFAEDMDEAVRDCAAYADSGDFVLL 425


>gi|262282143|ref|ZP_06059912.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus sp. 2_1_36FAA]
 gi|262262597|gb|EEY81294.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus sp. 2_1_36FAA]
          Length = 443

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 136/371 (36%), Gaps = 57/371 (15%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L+  LS+I  T   IG             R      + +FE     
Sbjct: 107 GVAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSAGAKYFVFE----- 152

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D  
Sbjct: 153 SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQ 210

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
              + +++       IY +G  K  DF      + +  S  +V  +G+ + E      G 
Sbjct: 211 LRRITSEA------PIYYYGFEKENDFVAHDLLRSTTGSTFKVSYRGQELGEFHIPTFGR 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++ +   D+D   + L  F   +   +R+   +  G  T+I + +  +P
Sbjct: 265 HNIMNATAVIGLLYVSGFDLDLVREHLKTFAGVK---RRFTEKVVNG--TVIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY- 399
             + A +    Q            PH   R IA+L       E + + +   A  L+   
Sbjct: 320 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALL------DEFADALNQADAVYLAQIY 373

Query: 400 -NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
            +   V      V  L + + + + V   + +  L         D  V V   +      
Sbjct: 374 GSAREVDHGDVKVEDLAEKIVKRVQVVSVDNVSPLLDH------DNAVYVFMGAGDIQTY 427

Query: 457 ---FYRLINLL 464
              F RL++ L
Sbjct: 428 EYSFERLLSNL 438


>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
 gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
          Length = 445

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +   L R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAELQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  K +IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNADDVFCHAMK-----RAGREVKWFSLEHKADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +                  V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTP------LRDALAGKAKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T++       +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEVGDIVLL 418


>gi|326333492|ref|ZP_08199733.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325948692|gb|EGD40791.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 472

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 137/380 (36%), Gaps = 28/380 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V+  L    + A  A +     ++A+ G+ GKTTT  +LT++L +            
Sbjct: 92  VAAVEKGLRIYPRSAGLASVMEGRRVLAVAGTHGKTTTTSLLTVSLQAAGAA-------- 143

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
               V   LA    +   G  +L ++   E      + +P+ AV+T +   HL  +   E
Sbjct: 144 PTYTVGGELAASGTNAAEGSSDLFVAEADESDGAFLVYKPYAAVVTNVEADHLDQWGTEE 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                 A+    L   G +    DD     L+  +H+LG +     G+S+ AD +     
Sbjct: 204 AYREGFAQFVGRLAPDGFLVAVIDDPGAADLRHVAHSLG-RRFIGVGESELADVRAVDIV 262

Query: 265 QCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                S   V     +   +     G H   + L  L +   L    D     L  F   
Sbjct: 263 LEGTTSSFTVVDGLDELGRITLQIPGRHYVADALAALTVGLRLGHSFDLLKAGLESFTGT 322

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R      +     + +SY  +P+ +  A  ++S  S  GEGR I        M  
Sbjct: 323 RRRMER----KGEAAGVRVYDSYAHHPSEI--AGDLVSGRSVAGEGRLIVAF--QPHMVS 374

Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFH------VLALKDALP-RSIHVHYSETMDGL 433
            ++ F  ++  VL   +   +  V+L+            + DA+P     V     ++  
Sbjct: 375 RTRIFGEEMGRVLGAADEVVVLDVYLAREDYDPEVTGKLVADAVPLPPDRVVSVAGLEEA 434

Query: 434 FLFIQSSLVDGDVVVVKSSN 453
            + +      GD+V+   + 
Sbjct: 435 AVELARRARPGDLVLTLGAG 454


>gi|300869091|ref|ZP_07113691.1| UDP-N-acetylmuramate--L-alanine ligase [Oscillatoria sp. PCC 6506]
 gi|300332907|emb|CBN58887.1| UDP-N-acetylmuramate--L-alanine ligase [Oscillatoria sp. PCC 6506]
          Length = 539

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 154/449 (34%), Gaps = 68/449 (15%)

Query: 44  FAIKGPHYDG-------HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96
            A  G + +G       H  +   +   A     +         L  P+F   DVL AL 
Sbjct: 100 IAASGDNRNGKGAIALSHLDLPQVICSTAIHPANSE--YRRALDLGCPIFHRSDVLAALI 157

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
                         IA+ G+ GKTTT  M+   L          +G   N       L  
Sbjct: 158 ---------LDYQSIAVAGTHGKTTTSSMIGFMLLKAGLDPTIVVGGEVNAWEGNARLGH 208

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            P    + + E   S    ++         I V+T I   H  ++  ++++ +      +
Sbjct: 209 GP----YLVAEADESDGSLVKLSAK-----IGVVTNIELDHPDHYDTLDQVIATFNVFAQ 259

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +    +    D    +      ++L     YS    + AD+ +   +  ++ +   V 
Sbjct: 260 NCQ---ILVGCIDCDTVK------NSLKPSVSYSLEADRGADYTVDSVEYRADCTIARVW 310

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G ++ E+    +G H   N L  + +  +L  +     KA++ F   EG  +R+    
Sbjct: 311 ERGTALGEMQLKLLGQHNLSNALAAVAVGRLLGLEFAVIAKAIADF---EGARRRFEVRG 367

Query: 335 NQGFFTLIDESYNANPASMKAAISVLS------------QISPHGEGRRIAVLGDMCEMG 382
                  +D+ Y  +P+ ++A ++               +I      R +AV        
Sbjct: 368 EHNGILFVDD-YAHHPSEIRATLTSARLRIENSKPKPKSKIKNSKSRRVVAVF--QPHRY 424

Query: 383 ELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVLALKDALPRSI-HVHYSETMDG 432
             + +F  + A+  S  +I   S ++ +G           L D +      V+Y  ++  
Sbjct: 425 SRTLTFLTEFAQSFSDADIVIVSDIYSAGEPNTGQISGEKLADLIAEHHQQVYYQPSLQS 484

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +  F+   L  GD+ +   +      ++I
Sbjct: 485 IAKFLTEILRPGDLALFLGAG--NLNQII 511


>gi|332653273|ref|ZP_08419018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
 gi|332518419|gb|EGJ48022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
          Length = 460

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 137/366 (37%), Gaps = 41/366 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL+           + ++A+TGS GKTTT  +++  L    KT    G+    +     
Sbjct: 100 AALSSEMEVFFQTCPSHLVAVTGSDGKTTTTTIISEFLKEAGKTVYVGGNIGKPLLP--D 157

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A M  + D+ + EL    L  +        P+IAVIT +AP HL     +EE  +AK  
Sbjct: 158 VADMDPE-DYAVLELSSFQLMTMEQ-----SPNIAVITNLAPNHLDYHHTMEEYTNAKKN 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           IF    +   + LNYD+     + A++    +  +  F + +  +             W+
Sbjct: 212 IFLHQGEGDRLILNYDNEVTRSMAAEA----VCPVTWFSRKERLE---EGVYLRDNAIWL 264

Query: 273 EVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++  + +  +      G H  +N +  +  V  L  D        +V     G   R 
Sbjct: 265 TNEMGSREVLPLSDIQLPGVHNIENYMAAIAAVDGLVPD----KCVRAVARRFHGVEHRI 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                       ++S   +P+   A +   +Q       + I + G   +    +Q    
Sbjct: 321 ELVRELDGVKYYNDSIGTSPSRTTACLESFNQ-------KIILIAGGYDKGVPFTQLGVE 373

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVD 443
            +       ++  ++L+G    A++ A+ +        + +  +E +       + +   
Sbjct: 374 IVG------HVKALFLTGNTAGAIRQAVEQAPGYAESGMILAETEDLAAAVAAARQAAKP 427

Query: 444 GDVVVV 449
           GDVVV+
Sbjct: 428 GDVVVL 433


>gi|315187136|gb|EFU20893.1| UDP-N-acetylmuramate/alanine ligase [Spirochaeta thermophila DSM
           6578]
          Length = 489

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 142/445 (31%), Gaps = 57/445 (12%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           HDF  H +      VV +     +   L+      IP +     LGA ++   +A     
Sbjct: 61  HDFSHHHLHAPWHAVVHSAAYPPTHPQLAEARRLGIPCYPYPHALGAYSRHFRSA----- 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
                I G  GKT+T  +    L ++    A +      +         P    + + E 
Sbjct: 116 ----GIAGVHGKTSTTALTGTLLRALSLPAATLTGSAVPLWGGRATLTHPSP-RYFVAE- 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E R       P   V+T++   HL  +   E+I +A  E    L   G +    
Sbjct: 170 ----TCEYRRHFLHFNPTWIVLTSVEEDHLDYYPTYEDIFAAFLEYAHLLPPDGALIYCA 225

Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           D     +  +  +       +  +G++    F++    Q        +      +    H
Sbjct: 226 DQPGAVQAARTLAAERPDLALIPYGRTAPGPFRITDISQHPGAQTARLAAG---LSFTLH 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADV-----------DTAIKALSVFHPKEGRGKRYRCALN 335
             G HM  N    L + +++  D            D A    +      G  +R      
Sbjct: 283 VPGAHMLLNATAALALTALIAQDAGLAPSPEAFLSDHAGPLCAALASYTGTRRRSEVVGQ 342

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G    ID+ Y  +P +++A +       P   GRRI +L  M      + +   + A  
Sbjct: 343 AGGIIFIDD-YGHHPTAIRATLEGYRTFYP---GRRI-ILDFMSHTYSRTAALLHEFARS 397

Query: 396 LSLYNISHVW------------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
               +I  +             ++G  +     A+     V+Y+  +   F      L  
Sbjct: 398 FEPADIVILHKIYASARETSGAVTGEDLYRAASAM--HPFVYYTHEVMDAFDLCTRILRP 455

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468
           GD+ +   +     ++L   L + +
Sbjct: 456 GDLFITMGAGDN--WKLGRALYQHY 478


>gi|256845952|ref|ZP_05551410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719511|gb|EEU33066.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 468

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 107/289 (37%), Gaps = 25/289 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IAI G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 96  LKRGELLAKLLNRETGIAIAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  AVIT I   HL     ++ I  +  E  
Sbjct: 146 EIKSNAKPGKSEYFIAEADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFI 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D    +   A +     K++ ++  K +N     R  +    ++  E
Sbjct: 206 SHTQKE--AIICMDCENLKE--AITRLPKGKSVITYSIKDENTSIFARNIRITDRKTIFE 261

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H  QN L  + +        +   +AL+ F   + R      
Sbjct: 262 LYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLFD 321

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              +  +        I + Y  +P  +KA +  +  I      R +A+ 
Sbjct: 322 KELENGYGNKTKKVRIIDDYAHHPTEIKATLKAIKSIDTS---RLVAIF 367


>gi|42519540|ref|NP_965470.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus johnsonii NCC
           533]
 gi|48428300|sp|P61680|MURC_LACJO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|41583829|gb|AAS09436.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus johnsonii NCC
           533]
          Length = 437

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 116/356 (32%), Gaps = 46/356 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   L  +  T   IG             +      F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVEGSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    ++ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       +D   + L  F   +    R     + G  ++ID+ Y 
Sbjct: 266 FGDHSILNTTAVIAVAYTEKVPMDDIKEGLLTFKGAK----RRFAEKDFGDVSVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WL 406
            +P  M+A I    Q  P  E   + V          ++ +  D  E+L   + ++V  +
Sbjct: 321 HHPTEMRATIQAARQKFPDKE--LVVVF--QPHTFSRTKKYQKDFEEILRDVDKAYVTPI 376

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 A  D              V   + +  L            VVV   +   
Sbjct: 377 YASAREASGDISSEDLVNNIPGSEVIDLDNIADLTKH------KNAVVVFMGAGDI 426


>gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M13399]
 gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240013]
          Length = 445

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 35/346 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD F   +K        + +  F     ADF L +     +Q   ++          
Sbjct: 219 LNSDDVFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDL-----IATQD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N++  + +   +    +  ++ +  F    G   R      +     ID+
Sbjct: 269 IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQ---GLPHRVEKIGEKNGVVFIDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI+ L             +LG M +  + +      + +         V
Sbjct: 326 SKGTNVGATAAAIAGLQN-------PLFVILGGMGKGQDFTPLRDALVGK------AKGV 372

Query: 405 WLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     + +D     +++    T+        +    GD+V++
Sbjct: 373 FLIGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 511

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/474 (15%), Positives = 149/474 (31%), Gaps = 68/474 (14%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
             + IS +S+S+     FF           ++  A Q GA   +       +     IP 
Sbjct: 30  PFDQISYNSKSVTDNCLFFCKGNFKS---AYLDDARQNGATAYMSEKTYQNA----GIPG 82

Query: 86  FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGS 142
             V ++  A++ ++ A     + +   IA TG+ GKTT+       L     +  A   +
Sbjct: 83  IIVKNIQKAMSLVSAAFFGFPQDQLPTIAYTGTKGKTTSAYFTKAILDQTYQRKVALSST 142

Query: 143 YNNHIGVP-----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            N  +G+                   T+ R   D       + +S     +   + +   
Sbjct: 143 INTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEVSSQAYKKNRVYGLHYD 202

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHAL 242
           + V   I+P H+         +    K ++   L  +    LN D +   ++  A     
Sbjct: 203 VGVFLNISPDHIGRNEHPTFADYLHCKEQL---LVNSDVCVLNADGTHLTDIFYAAKATT 259

Query: 243 GIKTIYSFGKSKNA-------DFQLRKWKQCSEQSWMEVQLQGKSME-------VVHHGI 288
             + I+ +G++          D + R  K    ++ ++V  +    +             
Sbjct: 260 QPENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDGVYRIGIP 319

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N +      +++ A        L+      GR + Y+   +      +   Y  
Sbjct: 320 GDYNEGNAVAAAITSALMGAKPTEIAYGLAN-TTVPGRMEIYQTHDHG----TVYVDYAH 374

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S+ + +  L + +P+  G+   + G     G+        L + ++         + 
Sbjct: 375 NYGSLHSVLDFLKKQAPN--GKVTVITGS---TGDKGIDRREGLGKAINEAADQAYLTTD 429

Query: 409 FHVLALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + + I  H         Y            S    GD+VVV  K 
Sbjct: 430 DPATEDPQQIAKEIAAHIDTSKVATTYIPDRKQAITKAVSESQKGDLVVVAGKG 483


>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae G54]
 gi|226722946|sp|B5E2Z8|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
 gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae G54]
          Length = 450

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D +
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIATDKN 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
 gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
          Length = 499

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 151/433 (34%), Gaps = 55/433 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGA---------LNKLAVAARLR 105
           +    + G  + V + +      ++ +       D+   A          ++        
Sbjct: 61  LGQLREAGITVYVGHREEQVPTNAIVVVTSAIHEDNPEAARAKSLGLEIWHRSQALDFCT 120

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++A+ G+ GKT+T  M+  AL  I    +   +    I    T AR+     F + 
Sbjct: 121 RSHELVAVAGAHGKTSTSSMMAHALLDIGADPS--FAIGGIIADLGTGARLGSGSAF-VI 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    + +      P + VIT I P HL ++        A  +    L K G + L
Sbjct: 178 EADESDGSFLNY-----SPAVEVITNIEPDHLDHWGSAAAFEQAFVDFTGRLRKGGALVL 232

Query: 226 NYDDSFFELLKAKSHALG---IKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQG 278
             DD+  + L  +  A G      + S+G     + +   QL + +    +   +V +  
Sbjct: 233 CADDAGVKRLAEQVSARGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITD 292

Query: 279 KSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +V H  +     G HM  N    LG   +L  D+   I AL  F    G  +R +  
Sbjct: 293 AGQQVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTFS---GADRRMQPV 349

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH---- 389
             +    + D+ Y  +P  + A +     ++   +GR +        +   S+++H    
Sbjct: 350 GERDGVRIYDD-YGHHPTEIAATLQAARDLAG--KGRLLVCF--QPHL--YSRTYHNVDA 402

Query: 390 -------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                  +D   V ++Y      + G +   + + L +     Y   M    L    +  
Sbjct: 403 FARVFATVDDLTVCAVYAAREAPIPGVNGNIITEHLGKG---TYVADMYAAGLHAFRAAR 459

Query: 443 DGDVVVVKSSNSC 455
            GD ++   + S 
Sbjct: 460 PGDFLLFLGAGSI 472


>gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Symbiobacterium thermophilum IAM 14863]
 gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 455

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 132/364 (36%), Gaps = 38/364 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A++          +A +I +TGS GKTTT  ++   L +  +     G+    +   + 
Sbjct: 95  AAISGEIGLVLDLCRAPVIGVTGSAGKTTTTTLIGEILRAAGRETYVGGNIGKPLIEQV- 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                      + EL    L  +        PHIAV+T ++P HL   + +EE   AK  
Sbjct: 154 --EAIPSEAVVVLELSSFQLQLVHR-----SPHIAVVTNVSPNHLDVHATMEEYVEAKKA 206

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           IF        + LN DD       A++ +     +  F  S+ AD   R      E   +
Sbjct: 207 IFRRQSPADWLVLNADDPTVRAFAAEARS----RVVLF--SRRADPGGRDAAFVRED-RV 259

Query: 273 EVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  G+   ++        G H  +N+L  +    +  A +    + ++ F   E R +
Sbjct: 260 IWRRGGRETPILFLDEIRLPGLHNQENVLAAVAACFLAGAPLSAVREVVTQFTGVEHRIE 319

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             R           ++S   +PA   AA++ L           + + G   +        
Sbjct: 320 PVRVL---DGVKWYNDSKATSPAEAVAALTTL-------PAPIVLIAGGSDKGIPFDP-- 367

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGD 445
              +A +++   +  + L G     +++A+ R  +   +  +  M       + +   GD
Sbjct: 368 ---IAPLVAE-KVKTLILMGPTAPKIEEAVRRGGYAGPIRRAADMAEAVALAREAAAPGD 423

Query: 446 VVVV 449
            V++
Sbjct: 424 TVLL 427


>gi|52425724|ref|YP_088861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900506|sp|Q65RY4|MURD_MANSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52307776|gb|AAU38276.1| MurD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 439

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 136/348 (39%), Gaps = 41/348 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +IAITGS GK+T   ++T     + K          +IG+P  L+ +  + D  
Sbjct: 101 REAAKPVIAITGSNGKSTVTALVT----EMGKAAGLSVGMGGNIGIPA-LSLLNENHDLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H++ ++ +EE   AK  I+   +   T 
Sbjct: 156 VLELSSFQL----ETTYSLKATAATVLNVTEDHMNRYADLEEYRQAKLNIYHHCQ---TA 208

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D     L  +      +   SF ++ NAD+ L+     +E     +  + K +  
Sbjct: 209 VINGEDP----LTKEDDKQSAQQQVSFAEN-NADYWLK-----TENGKKYLMAKDKLILA 258

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +           + AL  F    G   R++ A        
Sbjct: 259 CDEIKLTGRHNHMNALAAIALAQAAGIKNSGILTALRTF---PGLAHRFQLAHMANGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L     H EG+   +LG   +  + S     +L ++++   I
Sbjct: 316 VNDSKATNVGSTVAALTGL-----HIEGKLHLLLGGDGKGADFS-----ELEKLINKPEI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S       TM+     ++ +L  GD+V++
Sbjct: 366 -FCYCFGQDGAHLAKLSSQS---QLFNTMEQAIETLRPTLKPGDMVLL 409


>gi|27904701|ref|NP_777827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076803|sp|Q89AQ2|MURD_BUCBP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27904098|gb|AAO26932.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 442

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 133/347 (38%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +K  IIAITGS GK++  +++   +     T    G+          L  +     F 
Sbjct: 104 QETKVPIIAITGSNGKSSVTKIVKEIIQKAGFTTYIGGNIGIP-----ALNIVNKFAHFF 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++ +IA I  I P HL+   S I+E   AK +I++    +  
Sbjct: 159 ILELSSFQL----ERTFSLKAYIATILNITPDHLNRYSSDIKEYEKAKQKIYKN---SKI 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N D+         +    +    SFG     D+ L      +   +  ++L      
Sbjct: 212 CIINVDNPV-----TINRQAQLTKCISFGVHSG-DYHLSHTYTNTWLCYKSLKLIN---T 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   NML  L IV  L      +++ L  F    G   R +        T I
Sbjct: 263 KKLKLSGRHNYINMLSALAIVHELKISFKISVRILKNFL---GLPHRCQKVYKNNNITWI 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S + N AS K+AI  +     + +G+   +LG         +S +++L + +   N  
Sbjct: 320 NDSKSTNIASTKSAIQSI-----NTKGKIRLILGG------DKKSSNLNLLKPILKNNAI 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L +  P    +   ET+  +   I   +  GDVV++
Sbjct: 369 VIYCYGKDKKELFNLYPHKSKI--FETLQEVMQHISVQVQPGDVVLL 413


>gi|256027425|ref|ZP_05441259.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D11]
          Length = 460

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 140/397 (35%), Gaps = 46/397 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IA+ G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 88  LKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 137

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  +VIT I   HL     ++ I  +  +  
Sbjct: 138 EIKSNARPGKSEYFIAEADESDNSFLFMYPKYSVITNIDADHLDVHGNLDNIKKSFIKFI 197

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D        A S     KT+ ++  K +NA+   +  +    ++  E
Sbjct: 198 CHTQKE--AIICMDCENLRD--AVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFE 253

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H   N L  + +        +   + L  F   + R      
Sbjct: 254 LYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFD 313

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------ 380
              +  +        I + Y  +P  +KA +  +  I       R+ V+           
Sbjct: 314 NDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKSIDKS----RLVVIFQPHRYSRVHF 369

Query: 381 -MGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFI 437
            + E   +F  D+ +V+ L     ++ +G         + L   I+ +  E M+  +  +
Sbjct: 370 LLDEFKDAF-KDVDKVILL----PIYAAGEKNEFNISSEILKEHINHNNVENMNE-WKDV 423

Query: 438 Q---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +   S +      +   +       L + + EE   +
Sbjct: 424 KRYVSRVKKDSTYIFMGAGDI--STLAHQIAEELEGM 458


>gi|294784927|ref|ZP_06750215.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
 gi|294486641|gb|EFG34003.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 468

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 107/289 (37%), Gaps = 25/289 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IAI G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 96  LKRGELLAKLLNRETGIAIAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  AVIT I   HL     ++ I  +  E  
Sbjct: 146 EIKSNAKPGKSEYFIAEADESDNSFLFMNPKYAVITNIDADHLDVHGNLDNIKKSFIEFI 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D    +   A +     K++ ++  K +NA    +  +    ++  E
Sbjct: 206 SHTQKE--AIICMDCENLKE--AITRLPKGKSVITYSIKDENASIFAKNIRITDRKTIFE 261

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H  QN L  + +        +   +AL+ F   + R      
Sbjct: 262 LYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLFD 321

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              +  +        I + Y  +P  +K  +  +  I      R +A+ 
Sbjct: 322 KELENGYGNKTKKVRIIDDYAHHPTEIKVTLKAIKSIDTS---RLVAIF 367


>gi|289765388|ref|ZP_06524766.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
 gi|289716943|gb|EFD80955.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
          Length = 468

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 140/397 (35%), Gaps = 46/397 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IA+ G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 96  LKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  +VIT I   HL     ++ I  +  +  
Sbjct: 146 EIKSNARPGKSEYFIAEADESDNSFLFMYPKYSVITNIDADHLDVHGNLDNIKKSFIKFI 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D        A S     KT+ ++  K +NA+   +  +    ++  E
Sbjct: 206 CHTQKE--AIICMDCENLRD--AVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFE 261

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H   N L  + +        +   + L  F   + R      
Sbjct: 262 LYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFD 321

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------ 380
              +  +        I + Y  +P  +KA +  +  I       R+ V+           
Sbjct: 322 NDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKSIDKS----RLVVIFQPHRYSRVHF 377

Query: 381 -MGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFI 437
            + E   +F  D+ +V+ L     ++ +G         + L   I+ +  E M+  +  +
Sbjct: 378 LLDEFKDAF-KDVDKVILL----PIYAAGEKNEFNISSEILKEHINHNNVENMNE-WKDV 431

Query: 438 Q---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +   S +      +   +       L + + EE   +
Sbjct: 432 KRYVSRVKKDSTYIFMGAGDI--STLAHQIAEELEGM 466


>gi|237742550|ref|ZP_04573031.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|229430198|gb|EEO40410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
          Length = 468

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 123/321 (38%), Gaps = 28/321 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+ +T +  +   LS   +  ++ +  L +  + A+L ++ T IAI G+ GKTTT
Sbjct: 67  KGADYVIASTAIKETNPELS---YAKNNGITLLKRGELLAKLLNRETGIAIAGTHGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ML+  + S   T          I V   L  +  +   G  E  ++   E       +
Sbjct: 124 SSMLSAVMLSKDPT----------IVVGGILPEIKSNAKPGKSEYFIAEADESDNSFLFM 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  AVIT I   HL     ++ I  +  E     +K     +  D    +   A +   
Sbjct: 174 NPKYAVITNIDADHLDVHGNLDNIKKSFIEFISHTQKE--AIICMDCENLKE--AITRLP 229

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             K++ ++  K +NA    +  +    ++  E+ +  + + E   +  G H  QN L  +
Sbjct: 230 KGKSVITYSIKDENASIFAKNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVI 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------TLIDESYNANPASMK 354
            +        +   +AL+ F   + R         +  +        I + Y  +P  +K
Sbjct: 290 YLALKFRVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIK 349

Query: 355 AAISVLSQISPHGEGRRIAVL 375
           A +  +  I      R +A+ 
Sbjct: 350 ATLKAIKSIDTS---RLVAIF 367


>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           tasmaniensis Et1/99]
 gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 438

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        LTL + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---ALTLLQQPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYENATA--- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG    ADF      +    +W+ VQ +     
Sbjct: 209 CVVNADDAMTMPIRGADA-----RCVSFG----ADFGDYHLTRQQGSTWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     T++KAL+ F    G   R++          I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRATSLKALTTF---NGLPHRFQLVHEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H  G    +LG   +  + +      L   L    I 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HPAGTLWLLLGGDGKSADFTP-----LTRYLQGERI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+  G     L  AL   I V  + TM      I + +  GD+V++
Sbjct: 366 RVYCFGRDGAELA-ALRPEIAVQ-TATMAEAVRQIAAQVRPGDLVLL 410


>gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 441

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 123/345 (35%), Gaps = 38/345 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    ++AITGS GK+T  ++  +  ++     A  G+          L  +  D +  +
Sbjct: 107 QVDKPVVAITGSNGKSTVTDLTGVVANAAGVKTAIGGNIGVP-----ALELLDQDAELYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +    A    ++  H+  +  +E    AK  IFE  +   T  
Sbjct: 162 LELSSFQL----ETTSSLSLKAAAFLNLSEDHMDRYDDMEGYRQAKLRIFEQAQ---TCI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD       A         +  F   K+ +F ++  +        + ++        
Sbjct: 215 VNADDP------ATYPDKKDAPLVEFSLEKSCEFHVKVVEGREYLCHQDAKIL---ASDE 265

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L ++     D+   I A        G   R +   +      +++
Sbjct: 266 LSLVGRHNVANALVVLALLEQAGVDISLGIDA---LKSYNGLTHRCQVVADNNGVKWVND 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S LS       G+   ++G   +  + S     +L   L   ++  +
Sbjct: 323 SKATNVASTLAALSGLS-----LSGKLYLLVGGDGKGADFS-----ELQPALDQLDV-QL 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G         LP   +    ETM+ +  +    +  GD++++
Sbjct: 372 CCFGADGDKF---LPLHRNAKRFETMEDIVKWASPRVEAGDMIML 413


>gi|118474991|ref|YP_891986.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118414217|gb|ABK82637.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 478

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 127/345 (36%), Gaps = 30/345 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S   I+ IT S GKT+ K  L   L      Y    S N   G+   +   +  +    I
Sbjct: 155 SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 214

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + PH  ++  I  AH+  F  IE + + K E            
Sbjct: 215 AEAGARLKGDIKDITEFLEPHFVIVGEIGDAHIEYFKSIENVRATKLEALNSSRIKKAF- 273

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     L + +     K I  +      D  ++      +     +    K +   
Sbjct: 274 ----------LHSSTLKNYDKNIVIY------DILVKNIVSNLDGVKFSILYNAKELHFS 317

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+   + +   L  +  T   A+      E R +R       G   +ID+
Sbjct: 318 SKLLGGFNAYNLCACILLAMELGVNEQTLQNAILKIKSVEHRLERIE----AGGKIIIDD 373

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   MK +  +++  S    G+++ +   + E G+ S   + +L++ ++      V
Sbjct: 374 SFNGNLKGMKESYELVNSYS----GKKVLLTPGIVE-GKSS--LNEELSKKINEVFDIVV 426

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +L   L +   V   +    +  F+ +  V GD+++ 
Sbjct: 427 ITNSLNEKSLTKFLVK-PEVVLLKDRSQMQDFLANHTVAGDLILF 470


>gi|237739356|ref|ZP_04569837.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422964|gb|EEO38011.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 463

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 120/321 (37%), Gaps = 28/321 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+ +T +  +        +  ++ +  L +  + A+L ++ T IAI G+ GKTTT
Sbjct: 59  KGADYVIASTAIKETNPEY---AYAKENGIKILKRGELLAKLLNRETGIAIAGTHGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ML+  +     T          I V   L  +  +   G  E  ++   E       +
Sbjct: 116 SSMLSAVMLKKDPT----------IVVGGILPEIKSNARPGKSEYFIAEADESDNSFLFM 165

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  +VIT I   HL     ++ I  +  E     +K     +  D      + A     
Sbjct: 166 NPEYSVITNIDADHLDVHGNLDNIKKSFIEFILHTQKES--IICMDSKNL--MDAILKLP 221

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
             K++ ++  K +NAD   +  +    ++  EV +  +   E   +  G H  QN L  +
Sbjct: 222 EGKSVTTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKGEFSLNIPGEHNIQNSLPVI 281

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------TLIDESYNANPASMK 354
            +      + D   +AL+ F   + R         +  +        I + Y  +P  +K
Sbjct: 282 YLALKFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTKRVRIVDDYAHHPTEIK 341

Query: 355 AAISVLSQISPHGEGRRIAVL 375
           A +  +  +      R +A+ 
Sbjct: 342 ATLKAIKSVDSS---RLVAIF 359


>gi|327462914|gb|EGF09235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1]
          Length = 444

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 166/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG+  +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGSFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D+D   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLDLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
 gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
          Length = 444

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 127/348 (36%), Gaps = 33/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITG+ GK+T   ++     +     A  G+    +   L +       D  
Sbjct: 101 REIHAPVIAITGTNGKSTVTTLVGEMAKAAGYNVAVAGNIGMPV---LDMLEDEHQYDLW 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     LT  + P +A I  ++P HL     ++    AK  ++   +    +
Sbjct: 158 VLELSSFQLD----LTSSLAPVVATILNVSPDHLDRHHSMDAYIRAKQRVYHHAQ---VV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD++ E       A  +    SFG ++ A      W   +++  + +         
Sbjct: 211 LFNRDDAYTE------PAGQVIRAISFGNNQPAT---EDWGLINQEDKIYLAHGNSCFLA 261

Query: 284 VHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               +  G H   N L    +           I   SV     G   R +          
Sbjct: 262 TESVLIKGVHNWLNALAACALADAAGIPRQYII---SVLTTFSGLSHRCQWVRTLDGVEW 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N   + A IS ++ I    +GR + + G   +  + S     +LA+ ++ + +
Sbjct: 319 INDSKGTN---IGATISAINGIGGSMQGRIVLIAGGQGKGADFS-----ELAQPIADF-V 369

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L G     +  AL   + +  + ++D      ++    GDVV++
Sbjct: 370 RSIVLIGEDADKIAAALADVVPITRASSLDNAVAVAKTQAKPGDVVLL 417


>gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 371

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 120/364 (32%), Gaps = 53/364 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGVPLTLARMP------- 157
           +I +TG+ GKTTT  ++   L+ +    A IG+      N  +    T   +        
Sbjct: 1   MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60

Query: 158 ----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                ++   + E     L   R   + +     V T ++  H+     ++    AK  +
Sbjct: 61  EAKKENIKNAVMETSSHGLYLKRN--YGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMIL 118

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
               +K     +N DD + +  K        K   +   ++++ ++ +  K+        
Sbjct: 119 LNNSKKQ---VVNLDDDYGKRAKEI-----FKDALTISINEDSKYRAKNIKRVDLGLEFT 170

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V      ++   +  G++   N L  + I + L   ++   KAL  F   + R +     
Sbjct: 171 VN----GVKFHLNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFIENK 226

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDL 392
           L       I   +   P + +     L       + ++I AV G     G+ +      +
Sbjct: 227 LGIN----IVVDFAHTPEAFENLFKDL------PKDKKIYAVYG---INGDRTYDIRKAV 273

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM---------DGLFLFIQSSLVD 443
            ++ + Y +  V  +        + + + I     E                +  S    
Sbjct: 274 GKISAKYGVFSVITTDDPKFDTFENISQQIKEGVDENKGESIIIKDRKEAIKYGISHAKK 333

Query: 444 GDVV 447
           GD V
Sbjct: 334 GDFV 337


>gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
 gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
          Length = 499

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 149/426 (34%), Gaps = 50/426 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH      V   A +VV +     +  +      G    L   ++            ++A
Sbjct: 74  GHR--EEQVPANAIVVVTSAIHEDNPEAARAKALG----LEIWHRSQALDFCTRSHELVA 127

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  M+  AL  I    +   +    I    T AR+     F + E   S  
Sbjct: 128 VAGAHGKTSTSSMMAHALLDIGADPS--FAIGGIIADLGTGARLGSGSAF-VIEADESDG 184

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + +      P + VIT I P HL ++        A  +    L K G + L  DD+  
Sbjct: 185 SFLNY-----SPAVEVITNIEPDHLDHWGSSAAFEQAFVDFTGRLRKGGALVLCADDAGV 239

Query: 233 ELLKAKSHALG---IKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + L  +    G      + S+G     + +   QL + +    +   +V +     +V H
Sbjct: 240 KRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFH 299

Query: 286 HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G HM  N    LG   +L  D+   I AL  F    G  +R +    +    
Sbjct: 300 GQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTFS---GADRRMQPVGERDGVR 356

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH----------- 389
           + D+ Y  +P  + A +     ++   +GR +        +   S+++H           
Sbjct: 357 IYDD-YGHHPTEIAATLQAARDLAG--KGRLLVCF--QPHL--YSRTYHNVDAFARVFAT 409

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +D   V S+Y      + G +   + + L +     Y   M    L    +   GD ++ 
Sbjct: 410 VDDLTVCSVYAAREAPIPGVNGNIITEHLGKG---TYVADMYAAGLHAFRAARPGDFLLF 466

Query: 450 KSSNSC 455
             + S 
Sbjct: 467 LGAGSI 472


>gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
 gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
          Length = 504

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 143/425 (33%), Gaps = 51/425 (12%)

Query: 10  LLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           L + I       VPQ         +S DSR       FF  KG  +    ++  AV +G 
Sbjct: 21  LKEFIGQEWHYTVPQEMNDLIFTSLSYDSRQTDANTLFFC-KGAAFK-ESYLESAVAQGL 78

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTK 123
              V                  V D+  A+  +A A     + +   I ITG+ GKT+  
Sbjct: 79  QCYVSEHPYENCSAYG----IIVTDIRAAMACIAQAFYNNPQDQLFKIGITGTKGKTSCA 134

Query: 124 EMLTIALSSIKKT----YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL-- 172
             +   L+         ++   +  +       +   P  +D           GM+HL  
Sbjct: 135 YFVREILAKTTNQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVANGMTHLVM 194

Query: 173 --GEIRF---LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                 +       +   I +   I+P H+        ++    K E+      +  + +
Sbjct: 195 EVSSQAYKTKRVSGITYEIGIFLNISPDHIGPVEHPDFDDYLFCKRELIHN---SKQMII 251

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
           N    +FELLK    A  +  + ++G+  + D+Q+   +    +S   +  +   +    
Sbjct: 252 NRQSDYFELLKETCAAHQV-PLITYGQC-DGDYQVLPAESGDPKS-FRIHSEKDILLVNG 308

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G     N    +    +  A  + A    SV       G+        G   +
Sbjct: 309 DYQLALLGEFNHDNATAAIVAACLAGATQEEA---QSVLPNVTIPGRMIVLEKQNGALII 365

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D  Y  N  S K+   +   + P  +GR I V G     G  ++S   D+   LS Y  
Sbjct: 366 VD--YAHNYLSFKSLSELAHTLRP--KGRLIFVTGS---AGGKAESRRPDMGRALSEY-A 417

Query: 402 SHVWL 406
             V+L
Sbjct: 418 DKVYL 422


>gi|322373855|ref|ZP_08048390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C150]
 gi|321277227|gb|EFX54297.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C150]
          Length = 442

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 139/386 (36%), Gaps = 50/386 (12%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V +               ++ T   + G+ GKT+T  +L+  + +I  T   IG    
Sbjct: 81  YAVKNGYKFKRYHEFLGHFMNQFTSFGVAGAHGKTSTTGLLSHVMKNITDTSYLIGDG-- 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    R   +  + +FE       E         P  ++IT I   H   F+ I++
Sbjct: 139 -------TGRGSANAQYFVFEA-----DEYERHFMPYHPAYSIITNIDFDHPDYFTSIDD 186

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           + SA  +  + ++K   +F+  +DS+   + + +       IY +G  +N DF      +
Sbjct: 187 VFSAFDDYAKQVQKG--LFVYGEDSYLRKITSNA------PIYYYGFEENDDFMATDIVR 238

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+  G+ + E      G H   N    +  + +   D+    + L+ F   +
Sbjct: 239 TTTGSNFKVKHDGQIIGEFHVPAYGRHNILNATAVIANMYVAGFDMALVAEHLNTFSGVK 298

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAV 374
              +R+   +  G  T+I + +  +P  + A +    Q            PH   R IA+
Sbjct: 299 ---RRFTERIING--TVIIDDFAHHPTEIIATLDAARQRYPSKEIVAIFQPHTFTRTIAL 353

Query: 375 LGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           L +  E    + + +  LA++  S   + H       V  L   + +   V   E +  L
Sbjct: 354 LDEFAEALNEADAVY--LAKIYGSAREVDH---GDVKVEDLAAKIKKPAKVVTVENVSPL 408

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYR 459
                    D  V V   +     Y 
Sbjct: 409 LDH------DNAVYVFMGAGDIQLYE 428


>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
          Length = 437

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 125/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +   T    G+          L  +  D D  + E
Sbjct: 107 NKPVVAITGSNGKSTVTDLTGVMAKAAGLTVGVGGNIGVP-----ALELLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +  +AK  IF+  E      +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDHAE---LAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++      + +FG  +    Q    +    ++W+    Q         
Sbjct: 215 RDD-------QETYPEVEMPVVTFGSDE----QAYGLEVDGSRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHNALNA---LKNYTGLTHRCQVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P         TM+ +   I S L  GD+V++
Sbjct: 370 FGLDGD---DFMPLHESAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|325977740|ref|YP_004287456.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177668|emb|CBZ47712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 452

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 129/352 (36%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A + S A II ITGS GKTTT  M+   L++  K+    G+          +A+   D D
Sbjct: 107 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFP---ASEVAQTATDKD 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PHIAVIT + P H+      EE  +AK  I + +    
Sbjct: 164 ILVMELSSFQLMG----TDTFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTADD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K+ A     +  F  ++  D                +  +G+++
Sbjct: 220 FVVLNFNQDLAKELAQKTAA----QVVPFSTTEKVDGAYLDGD--------TLYFKGEAI 267

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +     D   + L+ F   +    R +        
Sbjct: 268 MKASEIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHFGGVK---HRLQALGGINGV 324

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + N  + + A+S           + I + G   + G        D+       
Sbjct: 325 KFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------T 371

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +K A  ++ +V Y +   +             GDVV++
Sbjct: 372 GVKLMVILGESAPRVKRAADKA-NVPYVDAKDVADAARIAYDKAEAGDVVLL 422


>gi|256372024|ref|YP_003109848.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008608|gb|ACU54175.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 455

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 139/428 (32%), Gaps = 50/428 (11%)

Query: 45  AIKGPHYDGHD--FILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           AI    + GHD  +I  A V   +  +  +   +A+  +  +PV    ++L AL      
Sbjct: 53  AIGVEVHLGHDARWIDGADVVAASTAIPSSNVELAAARARGVPVLSRAELLAAL------ 106

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   ++A++G+ GKTTT  M+                      +   L        
Sbjct: 107 ---TAGKQVVAVSGTHGKTTTTAMI--------AQALQAADLAPSWVIGAELNEAGASGH 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            GI  L +    E       V  H+AV T + P HL ++   + + ++      G     
Sbjct: 156 AGIGSLFVVEADESDATFLAVDRHLAVATNLEPDHLDHYGSFDALVASFEAFVGG--SAL 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +  DD     L  +          ++G ++ A  Q+R        S  E  L  + +
Sbjct: 214 APVICVDDPRLAALAPEGA-------LTYGVAEAARLQIRNPVLTPTHSAFECFLDHRRL 266

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    +G H  +N    +     + A  D    A        G  +R++         
Sbjct: 267 GSIELGVLGMHNVRNGAAAVAAALSVGAPFDAVALA---LRRYVGVARRFQFKRELRGAR 323

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---- 396
           +ID+ Y   P  + A +    Q+     GR + V          ++   ++L   L    
Sbjct: 324 IIDD-YAHLPGEITATLQAARQLGS---GRIVVVF--QPHRYSRTKLLGVELGRALGDAD 377

Query: 397 -----SLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 +Y      + G     +  A         H+      L  F+ S +  GDVV+ 
Sbjct: 378 EVVVTDVYAAGEEPIPGVSGEVVWRAAAERLGERAHWVADRGALAAFVASVVRPGDVVLT 437

Query: 450 KSSNSCGF 457
             +     
Sbjct: 438 MGAGDVTM 445


>gi|254303964|ref|ZP_04971322.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324156|gb|EDK89406.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 468

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 121/321 (37%), Gaps = 28/321 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+ +T +  +   LS   +  ++ +  L +  + A+L ++ T IA+ G+ GKTTT
Sbjct: 67  KGADYVIASTAIKETNPELS---YAKNNGITLLKRGELLAKLLNRETGIAVAGTHGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ML+  + S   T          I V   L  +  +   G  E  ++   E       +
Sbjct: 124 SSMLSAVMLSKDPT----------IVVGGILPEIKSNAKPGKSEYFIAEADESDNSFLFM 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  AVIT I   HL     ++ I  +  E     +K     +  D    +   A +   
Sbjct: 174 NPKYAVITNIDADHLDVHGNLDNIKKSFIEFICHTQKE--AIICMDCENLKE--AVTRLP 229

Query: 243 GIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             K++ ++  K +NA    +  +    ++  +  +  + + E   +  G H   N L  +
Sbjct: 230 EGKSVTTYSIKDENASIFAKNIRIEDRKTIFDFYVNKELIGEFSLNIPGEHNISNSLPVI 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------TLIDESYNANPASMK 354
            +        +   +ALS F   + R         +  +        I + Y  +P  +K
Sbjct: 290 YLALKFGVSKEEIQEALSKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIK 349

Query: 355 AAISVLSQISPHGEGRRIAVL 375
           A +  +  I      R +A+ 
Sbjct: 350 ATLKAIKSIDTS---RLVAIF 367


>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
 gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
          Length = 437

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +   T    G+          L  +  D D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVLAKAAGLTVGVGGNIGVP-----ALDLLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N
Sbjct: 162 LSSFQL----ETTASLKLKAAAFLNLSEDHMDRYDGMADYRQAKLRIFDNTE---LAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++       + +FG  +    Q    +    ++W+    Q         
Sbjct: 215 RDD-------RETFPETETPLVTFGSDE----QAYGLEVDGNRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   ++ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHKSLNA---LKTYTGLTHRCQVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       + +P        +TM+ +   I S L  GD+V++
Sbjct: 370 FGADGD---EFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409


>gi|330718754|ref|ZP_08313354.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc fallax KCTC
           3537]
          Length = 443

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 35/303 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+ G+ GKT+T  +L   L +I  T   +G             R   +  F + E
Sbjct: 102 QTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLVGDG---------TGRGVPNSRFFVVE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   ++ I ++ SA ++    ++K   IF  
Sbjct: 153 A-----DEYRRHFKDYAPDYAILTNIDFDHPDYYTDINDVTSAFSDFANNVKK--AIFAW 205

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD     L  K+       IY +G +    DF  +  ++ ++ S  +V  +GK + E  
Sbjct: 206 GDDKHLRQLHPKAD------IYYYGVNPTRDDFVAQNIRKSTKGSHFDVTYRGKDLGEFS 259

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +  +   D+D   + L  F   +    R     +    T+ID+
Sbjct: 260 VPLYGQHSILNALAVIAVAYMEKVDLDLLREYLMTFTGVK----RRFSEKHIADITVIDD 315

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P+ + A +    Q   + + + IA+            ++  + A  L+      V
Sbjct: 316 -YAHHPSEIDATLDAARQ--KYPDKQIIAIF--QPHTFSRVIAYKDEFARSLN--AADKV 368

Query: 405 WLS 407
           +L+
Sbjct: 369 YLA 371


>gi|121727433|ref|ZP_01680561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|147675374|ref|YP_001218037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|262167568|ref|ZP_06035273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
 gi|121630205|gb|EAX62605.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|146317257|gb|ABQ21796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|227014431|gb|ACP10641.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae O395]
 gi|262024021|gb|EEY42717.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
          Length = 451

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 144/413 (34%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNSCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V  +G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVSPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus mutans UA159]
 gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6-
           diaminopimelate ligase; UDP-MurNac-tripeptide synthetase
           [Streptococcus mutans UA159]
          Length = 483

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 158/480 (32%), Gaps = 69/480 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++           P+   + IS DSR I     FF +KG  +   +F+  A++ G 
Sbjct: 16  NFREIIDGKHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFKK-EFLEKAIESGL 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTK 123
              V   D       + IP+  V+++  A  L         + K   +A TG+ GKTT  
Sbjct: 74  TFYVAEKDY-----QVGIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAA 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 L       A I + N  +               L L +M            I E
Sbjct: 129 YFAYHILKQ-GYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAVANGMTHLIME 187

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +        R   + +   + V   I+P H+        E+    K  +   L+ +  + 
Sbjct: 188 VSSQAYLVGR--VYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---LKHSRYVI 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N   + F L+K +           +G  K +D Q+   K           L GK +   
Sbjct: 243 VNSQMNHFALIKEQVADQPHD---FYG--KYSDNQIINSKA------FSFDLTGKLAGHY 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N +        L A      K           G+        G    +D
Sbjct: 292 DIQLTGSFNQENAVAAALACLQLGASQTDIQKG---IVQTTVPGRMEVLIQKNGAKVFVD 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S++  +SV+ +   H +G  I +LG     GE  ++   D   V++ +    
Sbjct: 349 --YAHNGDSLEKLLSVVEE---HQKGTLILILGAPGNKGESRRA---DFGYVINAHPELQ 400

Query: 404 VWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
           V L+               +   + R +++   +    +   +  +  + D V++  K +
Sbjct: 401 VILTADDPNNEDPQLISQEIAHHIKRPVNII-VDRKQAIQKAMSLTQSENDAVIIAGKGA 459


>gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 445

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 141/392 (35%), Gaps = 46/392 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  + +++    SL I V    D+            +  K  II+ITG+ GKTTT   + 
Sbjct: 59  IPWDAELLEKADSLRISVISEIDL--------AYRYMDKKTKIISITGTNGKTTTATKIY 110

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L          G+        ++  + P   D+ + EL    L         V  HIA
Sbjct: 111 ELLKEAGFDAELAGNAGFSFAKLVSDGKEP---DYVVLELSSYQLEN----DPEVHSHIA 163

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----ALG 243
            I  + P HL+ ++ +++    K  IF+   +     +N DD     + +++      + 
Sbjct: 164 GIINLTPDHLTRYNSLDDYYKTKFNIFDHQNENDYALINLDDKEILRIISENKDIDDKIK 223

Query: 244 IKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            K I+  G+ K AD   +          S +   ++           G H  +N+L  + 
Sbjct: 224 AKRIFLSGE-KKADVFQKDGMINVTDHNSQLIPLMK----TSELSLKGKHNLENILFIIS 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  IL  D++      S     +    R      +G    I++S   N  S   AI    
Sbjct: 279 VGMILNVDIEVMK---SFLSSTKPLEHRLENFFEKGKTVFINDSKGTNSESTIKAIEAF- 334

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                     + + G     G   Q+ + +L + ++   +  V+L G     L+  L   
Sbjct: 335 ------GKSTVLICG-----GYDKQASNKELIDKIAE-KVEFVYLIGQTSDILEKELKDQ 382

Query: 422 IHVHYS--ETMDGLFLFIQSSL--VDGDVVVV 449
            +  Y   +T++ +   I+ +L      VV+ 
Sbjct: 383 KYTQYKNLKTLENVLNDIKDNLDFSKEQVVLF 414


>gi|118618794|ref|YP_907126.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium ulcerans
           Agy99]
 gi|166224709|sp|A0PTI6|MURC_MYCUA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118570904|gb|ABL05655.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium ulcerans
           Agy99]
          Length = 488

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 119/323 (36%), Gaps = 32/323 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E   S    + +      PH+AV+T I   HL  +   E          E L   
Sbjct: 165 DYFVAEADESDGSLLEYT-----PHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPG 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSF----GKSKNADFQLRKWKQCSEQSWMEVQL 276
           G + +  DD     L  +S  LGI+ +  +             L  W+Q    +  ++QL
Sbjct: 220 GALVVCADDPGSAALAERSAELGIR-VLRYGSAGHAGAALAATLVSWEQRGTGAVAQIQL 278

Query: 277 QGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            G++    +     G HMA N+L  L     + A V   +  L+ F   EG  +R+    
Sbjct: 279 AGEADPRSMRLSVPGRHMALNVLGALLAAIEVGAPVGEVLDGLAGF---EGVRRRFELVG 335

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 + D+ Y  +P  ++A +  +   +   G GR + V      +   +++F  +  
Sbjct: 336 TAESVRVFDD-YAHHPTEVRATLEAVRSVVRQSGSGRLLVVF--QPHLYSRTKAFAAEFG 392

Query: 394 E---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                     VL +Y      L+G    ++ + +  ++ V Y      +   + ++   G
Sbjct: 393 SALDAADEVFVLDVYAAREQPLTGISGASVAEHV--TVPVRYLRDFSAVAEVVAAAAGPG 450

Query: 445 DVVVVKSSNSCGF--YRLINLLL 465
           DVVV   +         ++  L 
Sbjct: 451 DVVVTMGAGDVTLLGPEIVAALR 473


>gi|304383669|ref|ZP_07366128.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
 gi|304335193|gb|EFM01464.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
          Length = 458

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 150/419 (35%), Gaps = 46/419 (10%)

Query: 49  PHYDGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
              D    I  A + K A L+V    +  +   L+   F  ++      +  V   L   
Sbjct: 58  ERVD---EIPRACLNKSAALIVYTPAIPDNHKELT---FFREEGFEIQKRAQVLGTLTRT 111

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              + + G+ GKTTT  M    +        A +G  +   G    L+    D D+ + E
Sbjct: 112 HKGLCVAGTHGKTTTSTMCAHIMHQSHVDCNAFLGGISKDYGTNYILS---DDSDYVVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E     H +RP ++VIT+    HL  +   E    +       + + G + + 
Sbjct: 169 A-----DEYDRSFHWLRPWMSVITSTDADHLDIYGTREAYLESFRHYTTLIREGGALIIK 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
           +       L  K        IY +G+ +  DF  +  +  + +   +     +++E V  
Sbjct: 224 H------GLAMKPDVKEGVRIYEYGRDEG-DFHAKNIRIANGEITFDFVSPVENVENVEM 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                   +N +  + +  +     D     +  +H  E   +R+   +      L+ + 
Sbjct: 277 GLPIPINIENGVAAMAMAQLNGCTADELRYGMKTYHGVE---RRFDFKIKTDHCVLLSD- 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSL------ 398
           Y  +P  +  +I  + ++    EGRRI A+      +   ++ F+ + AE LSL      
Sbjct: 333 YAHHPKEIYQSIKSMREL---YEGRRITAIF--QPHLYSRTRDFYQEFAEALSLLDEVIL 387

Query: 399 ---YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              Y    + + G     + D L   +     +T + +   ++    D DV+++  +  
Sbjct: 388 CDIYPARELPIEGVTSQLIYDCLKPGVEKRMIKT-EEVLNVVRE--KDFDVLMILGAGD 443


>gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 499

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 150/426 (35%), Gaps = 50/426 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH      V   A +VV +     +  +      G    L   ++            ++A
Sbjct: 74  GHR--EEQVPANAIVVVTSAIHEDNPEAARAKALG----LEIWHRSQALDFCTRSHELVA 127

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  M+  +L  I    +   +    I    T AR+     F + E   S  
Sbjct: 128 VAGAHGKTSTSSMMAHSLLDIGADPS--FAIGGIIADLGTGARLGSGSAF-VIEADESDG 184

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             + +      P + VIT I P HL ++        A       L K G + L  DD+  
Sbjct: 185 SFLNY-----SPAVEVITNIEPDHLDHWGSAAAFEQAFVNFTGRLRKGGALVLCADDAGV 239

Query: 233 ELLKAKSHALGI---KTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + L  +  A G      + S+G     + +   QL + +    +   +V +     +V H
Sbjct: 240 KRLAEQVSARGDADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFH 299

Query: 286 HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G HM  N    LG   +L AD+   I AL  F    G  +R +    +    
Sbjct: 300 GQLNLRIGGKHMLLNAGGALGAAYVLGADLSQFIAALRTFS---GADRRMQPVGERDGVR 356

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH----------- 389
           + D+ Y  +P  + A +     ++   +GR +        +   S+++H           
Sbjct: 357 IYDD-YGHHPTEIAATLQAARDLAG--KGRLLVCF--QPHL--YSRTYHNVDAFARVFAT 409

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +D   V ++Y      + G +   + + L +     Y   M    L    +   GD ++ 
Sbjct: 410 VDDLTVCAVYAAREAPIPGVNGNIITEHLGKG---TYVADMYAAGLHAFRAARPGDFLLF 466

Query: 450 KSSNSC 455
             + S 
Sbjct: 467 LGAGSI 472


>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
          Length = 450

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D +
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIATDKN 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus CMCP6]
 gi|30316015|sp|Q8DEK8|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           CMCP6]
          Length = 442

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 128/343 (37%), Gaps = 35/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP-----ALDLLEQEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+++   AK  IF+  +      +N
Sbjct: 162 LSSFQL----ETTSSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHG---VVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     SH      + +FG    +D +         +SW+    Q         
Sbjct: 215 RDD--RQTYPETSHGQQSLALVTFG----SDDKEFGVISHQGESWLSYNQQPILASRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +++    D     K LS      G   R +   +      +++S 
Sbjct: 269 LVGQHNVANVLVVLALLTCAGID---YRKGLSALKSYTGLTHRCQVVADNRGIKWVNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS +AA+S L     +  G+   ++G   +  + S      L  +L+  N+  +  
Sbjct: 326 ATNLASTQAALSGL-----NCAGKLYLLVGGDGKGADFSP-----LKPILAQLNL-QLCC 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P        E M+ +   I   L  GD+V++
Sbjct: 375 FGADGD---QFMPLHASATRFERMEDVIEHISPQLQSGDMVML 414


>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
 gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
          Length = 442

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 129/343 (37%), Gaps = 35/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP-----ALDLLEQEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+++   AK  IF+  +      +N
Sbjct: 162 LSSFQL----ETTSSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHG---VVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     SH   +  + +FG    +D +         +SW+    Q         
Sbjct: 215 RDD--RQTYPETSHGQQLLALVTFG----SDDKEFGVMSHQGESWLSYNQQPILASRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +++    D     K LS      G   R +   +      +++S 
Sbjct: 269 LVGQHNVANVLVVLALLTCAGID---YRKGLSALKSYTGLTHRCQVVADNRGIKWVNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS +AA+S L     +  G+   ++G   +  + S      L  +L+  N+  +  
Sbjct: 326 ATNLASTQAALSGL-----NCAGKLYLLVGGDGKGADFSP-----LKPILAQLNL-QLCC 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P        E M+ +   I   L  GD+V++
Sbjct: 375 FGADGD---QFMPLHASATRFERMEDVIEHISPQLQSGDMVML 414


>gi|317055027|ref|YP_004103494.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
 gi|315447296|gb|ADU20860.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
          Length = 477

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 138/408 (33%), Gaps = 55/408 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +       V    D+LG +      A        + + G+ GKTTT  M
Sbjct: 80  AAIMADNPELIAAKESGAIVCERADILGVITGWYENA--------LCVCGTHGKTTTSSM 131

Query: 126 LTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           LT       +  +C IG     IG      +    V             E +     + P
Sbjct: 132 LTQIFVDAGEDVSCVIGGKLPSIGGSGRAGKSKDMVCEA---------CEYQDHFLKLHP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+I  +   HL  F  IE I  +     +    +  +  N DD+           +  
Sbjct: 183 DCAIILNVDADHLEYFKNIENIIKSFHTFADM--ASSAVIYNGDDANTRK---ALEGISG 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           K + SFG +K  D+      +    +      +G+S+ E+  +  G H   N L  L   
Sbjct: 238 KELISFGWNKANDYSAEIISKKGLVTRFTAFFKGESLGEIEINVPGNHNVLNALAALAAA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  + A K LS FH   G  +R++        T++D+ Y  +P  ++  +     +
Sbjct: 298 RYSGISFEAAAKGLSSFH---GAIRRFQLIDKVRGLTIVDD-YAHHPKEIEVTLRAAKSL 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSG-----FHVLALKDA 417
                 R  AV          ++    D A  L + +IS +  + G      H +  +  
Sbjct: 354 D---FKRVWAVFQPF--TYSRTEILMDDFARALEIADISVITDIMGSREKNDHGIYTEML 408

Query: 418 LPRSIHVHYSET----------------MDGLFLFIQSSLVDGDVVVV 449
             ++ +  + +T                 D    +I  +  DGD+++ 
Sbjct: 409 GEKTRNAVWFDTPHEVVDKQTAEQKEKNFDECIDYIMKNAEDGDILIT 456


>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 437

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 126/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +   T    G+          L  +  DVD  + E
Sbjct: 107 NKPVVAITGSNGKSTVTDLTGVMAKAAGLTVGVGGNIGVP-----ALELLEQDVDLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +  +AK  IF+  E      +N
Sbjct: 162 LSSFQL----ETTLSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDHAE---LAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++      + +FG  +    Q    +    ++W+    Q         
Sbjct: 215 RDD-------QETYPEVEMPVVTFGSDE----QAYGLEVDGSRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHNALNA---LKNYTGLTHRCQVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P         TM+ +   I S L  GD+V++
Sbjct: 370 FGLDGD---DFMPLHESAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|297530715|ref|YP_003671990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
 gi|297253967|gb|ADI27413.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
          Length = 451

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 120/348 (34%), Gaps = 38/348 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+   I ITGS GKTTT  ++   L +  +     G+      V   +AR      + + 
Sbjct: 110 SEGPFIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAREAKPGQWLVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RP IAV+  I  AHL      E  A+AKA IF    +     +
Sbjct: 167 ELSSFQLAGIDKF----RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYAVV 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEV 283
           N DD     + +   +  +    +    + A  Q     W         ++ L G+    
Sbjct: 223 NADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYWNGDPVIRIADIVLPGQ---- 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                  H  +N+L  +    +  A  +   + L+ F   +    R +           +
Sbjct: 279 -------HNLENILAAVAAAKLAGASDEAIRQVLATFSGVK---HRLQYVAEIDGRRFYN 328

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  + + A+S  +       G  + +L    + G    +   DL   L    +  
Sbjct: 329 DSKATNILATQKALSAFA-------GEPVILLAGGLDRG----NEFDDLLPYLQQ--VKA 375

Query: 404 VWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +     ++    + Y + ++            GDV+++
Sbjct: 376 VVLFGQTADKIGRIAQKAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|261419315|ref|YP_003252997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. Y412MC61]
 gi|319766131|ref|YP_004131632.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
 gi|261375772|gb|ACX78515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC61]
 gi|317110997|gb|ADU93489.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 120/348 (34%), Gaps = 38/348 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+   I ITGS GKTTT  ++   L +  +     G+      V   +AR      + + 
Sbjct: 110 SEGPFIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAREAKPGQWLVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RP IAV+  I  AHL      E  A+AKA IF    +     +
Sbjct: 167 ELSSFQLAGIDKF----RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYAVV 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEV 283
           N DD     + +   +  +    +    + A  Q     W         ++ L G+    
Sbjct: 223 NADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYWNGDPVIRIADIVLPGQ---- 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                  H  +N+L  +    +  A  +   + L+ F   +    R +           +
Sbjct: 279 -------HNLENILAAMAAAKLAGASDEAIRQVLATFSGVK---HRLQYVAEIDGRRFYN 328

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  + + A+S  +       G  + +L    + G    +   DL   L    +  
Sbjct: 329 DSKATNILATQKALSAFA-------GEPVILLAGGLDRG----NEFDDLLPYLQQ--VKA 375

Query: 404 VWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +     ++    + Y + ++            GDV+++
Sbjct: 376 VVLFGQTADKIGRIAQKAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|240850891|ref|YP_002972291.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
 gi|240268014|gb|ACS51602.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
          Length = 475

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 141/409 (34%), Gaps = 51/409 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V        +     +P+    ++L  L +   A         IA+ G+ GKTTT  M+
Sbjct: 75  AVKKTNPEYIAAKERHLPLVRRAEMLAELMRFRRA---------IAVGGTHGKTTTTSMV 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +       I   N  I           D D+ I E   S    ++     +   I
Sbjct: 126 AALLDAGHFDPVVI---NGGIINAYGTNSRTGDGDWMIVEADESDGTFLK-----LPADI 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   HL ++   + +  A  +  E +   G   L  D    + L  +   +  + 
Sbjct: 178 AVITNIDAEHLDHYGSFDAVREAFRQFVENVPFYGFAVLCLDHPEVQSLAGR---IDDRW 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSME---VVHHGIGYHMAQNMLMT 299
           + ++G +  AD +        +++  +V ++    G+ +E   ++    G H   N    
Sbjct: 235 VITYGANPQADVRFLNLSMDGQKTHFDVLVRSRKTGRKIELKNLLLPMAGQHNVANATAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L+ F   + R  R            I + Y  +P  +KA   V
Sbjct: 295 IAIAHELGISNEAIKRGLAEFGGVKRRFTR----TGSWRGIEIFDDYGHHPVEIKA---V 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFH-----------IDLAEVLSLYNISHVWLSG 408
           L       +GR IA+     +    S+ +H            D   +  +Y      + G
Sbjct: 348 LRAARESAKGRVIAI----AQPHRYSRLYHLFDDFSACFNDADTVLITPVYAAGEEPIVG 403

Query: 409 FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           F    L + +  + H  V    +++ +  F+       D VV   + + 
Sbjct: 404 FGSQELVEHIKMAGHRDVRLIHSLEDVVSFVSKFAQAEDYVVFLGAGNI 452


>gi|219870389|ref|YP_002474764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
 gi|219690593|gb|ACL31816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
          Length = 432

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 124/348 (35%), Gaps = 43/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITGS GK+T   + T             G+          L+ +  D +
Sbjct: 100 FYREAKAPIIAITGSNGKSTVTTLTTEMAKQAGVKVGMGGNIGVP-----ALSLLKGDYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  I+  H+  +  IE+   AK +I+   E   
Sbjct: 155 LYVLELSSFQL----ETTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHHAEN-- 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N +D   +    ++     K        K+A++     +  S      + +     
Sbjct: 209 -VIVNGEDP--QTFPEQAVGSLKKF-----AEKDAEYTACNGELYS-GDEAVIAIDE--- 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L ++ +      D    +KA        G   R++          
Sbjct: 257 ---LKITGRHNVMNALASMSLAEAAGVDRSGIVKA---LQSYSGLDHRFQLVPTNDGVRW 310

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L       EG    +LG     G+   +   +L   ++  N 
Sbjct: 311 INDSKATNVGSTVAALNGL-----QVEGTLYLLLG-----GDGKDADFSELKPFINQPN- 359

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +  G     L      S+ V   ETM+     I+  L  GD+V++
Sbjct: 360 TVCYCFGKDGAELAALTQNSVLV---ETMEQAVAQIRLRLKAGDMVLL 404


>gi|228476503|ref|ZP_04061193.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus salivarius
           SK126]
 gi|228251924|gb|EEK10970.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus salivarius
           SK126]
          Length = 442

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 134/374 (35%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T   + G+ GKT+T  +L+  + +I  T   IG             R  
Sbjct: 93  HEFLGHFMDQFTSFGVAGAHGKTSTTGLLSHVMKNITDTSYLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ I+++ SA  +  + +
Sbjct: 144 ANAQYFVFE-----SDEYERHFMPYHPAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + A +       IY +G  +N DF      + +  S  +V+  
Sbjct: 199 QKG--LFVYGEDPHLRKITANA------PIYYYGFEENDDFMATDIVRTTTGSNFKVKHD 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ + E      G H   N    +G + +   D+D   + L  F   +   +R+   +  
Sbjct: 251 GQILGEFHVPAYGRHNILNATAVIGNLYVAGFDMDLVAEHLKTFSGVK---RRFTEKIIS 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
           G  T++ + +  +P  + A +    Q            PH   R IA+L +  E    + 
Sbjct: 308 G--TVVIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  LA++  S   + H       V  L   + +   V   E +  L         D  
Sbjct: 366 AVY--LAQIYGSAREVDH---GDVKVEDLAAKINKPAKVVTVENVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
 gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 158/452 (34%), Gaps = 61/452 (13%)

Query: 31  SIDSRSIAPQ--EAFFAIKGP--HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            +D+R IAP   E      G    ++G  F  +     +  + +  D + +     + V 
Sbjct: 36  VMDTRDIAPGHEELEKLAPGSLLKWNGQQFTEYDELVVSPGIAIARDDIQAAQESGVSVI 95

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G  ++              +   +IAITGS GK+T  +++   +++  K     G+    
Sbjct: 96  GDIELFA----------QANTLPVIAITGSNGKSTVTDLVGELINASGKKALVGGNIGVP 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
               L L ++  D  +   EL    L      T  + P  A +  ++  HL  +   +E 
Sbjct: 146 ---ALDLLKLEGD--YVALELSSFQL----ESTRSLEPVAATVLNVSEDHLDRYKNYQEY 196

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK  I+    K  T  +N DD    +  A+S     + I  FG S N+D    K    
Sbjct: 197 IDAKRSIYA---KARTCLVNADDENTWIKSAES----GQNILRFGLSNNSD----KIDWA 245

Query: 267 SEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +     +   G  +  +      G H A N+ + L +V I   ++  A+   +     +
Sbjct: 246 VDFETCTIMHDGNEILKLDELTLQGIHNALNVAVALALVDIAEIELTQAVLDAA--KSYQ 303

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +    +   T I++S   N  +  AAI       P      I + G   +  +L
Sbjct: 304 GLPHRSQLVAIKDGITFINDSKATNVGATVAAIHSFE---PQFGKNIILIAGGDAKGADL 360

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S      L E++    +  V   G    A+    P    +     ++            G
Sbjct: 361 S-----SLQEIIKET-VKAVVCFGKDAPAIAKLAPAKTQL--VSNLEEAVRIAYEQAQKG 412

Query: 445 DVVVV---KSS---------NSCGFYRLINLL 464
           D+V++    +S             F  L+  L
Sbjct: 413 DLVLLSPACASLDMFANYMQRGEQFAHLVEAL 444


>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17545]
          Length = 450

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 129/351 (36%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------PG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYEIATQGDVVLL 421


>gi|154174300|ref|YP_001408218.1| Mur ligase family protein [Campylobacter curvus 525.92]
 gi|112802478|gb|EAT99822.1| Mur ligase family protein [Campylobacter curvus 525.92]
          Length = 475

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S   +I IT S GKT+ K  L   L      +    S N   G+   +   +       I
Sbjct: 156 SNLKVILITASYGKTSIKNFLYELLKDEFNCHKTPRSVNTLAGLMKDVNENLTQQTQIYI 215

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + PHI ++  I   H+  F  IE I + K E            
Sbjct: 216 AEAGARLKGDIKEITDFLNPHIVIVGEIGAQHIEYFKSIENIRATKLEALHSKHLEQAFV 275

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     LK+   A     IY+ G        L+      +   ++  L G+     
Sbjct: 276 ------HSSTLKS---ADDKTQIYNAG--------LKDVSADFDG--IKFSLDGEIYT-- 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+   + +   L    +   K+L      E R ++ +     G   +ID+
Sbjct: 315 SPLLGKFNAANLAACIKVAKFLGLSDENIKKSLQRLQNVEHRLQKMQ----AGGKLIIDD 370

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   M A+  ++       +GR++ +   + E    +Q+ + +L ++++      V
Sbjct: 371 SFNGNFVGMSASYELIGT----YKGRKVLITPGIVES---TQAENENLGKIINEI-FDVV 422

Query: 405 WLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +S   +  AL   + +   +   +    +   +      GDV++ 
Sbjct: 423 MISSPLNAQALLKTIVK-PEIIIIKDKTKMQEILAKHTRAGDVILF 467


>gi|269926710|ref|YP_003323333.1| UDP-N-acetylmuramate/alanine ligase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790370|gb|ACZ42511.1| UDP-N-acetylmuramate/alanine ligase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 452

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 149/426 (34%), Gaps = 37/426 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    +   G   VVV   ++ +   LS     V+  L  +++  +  +L +    IA
Sbjct: 51  GHD---ESHLDGVDCVVVTKPVMNTSEVLS----AVEKGLKVVDRAELLGQLMNGKKGIA 103

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKTTT  ++   L             +  + V        +   +G  E  ++  
Sbjct: 104 IAGTHGKTTTTALVAEILIRSG--------VDPTVLVGGVPVGWEIGGRYGKDEWMVAEA 155

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E       + P +AVIT I   H   F    E+  A +    G++  G +F+  +    
Sbjct: 156 DEYARSFLWLHPELAVITNIEHDHPDIFPTECELVDAFSSFLRGMKPDGKVFVCKESRLA 215

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYH 291
             +     +       ++G     D+  R  ++    +  ++      +E +     G H
Sbjct: 216 MEVVKGIASASRLYYQTYGVEGGCDWSARVTRKVGGVTCFDIIGPDFMLEGLKTSLPGRH 275

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N++  + +    +A  +    A+  F   +   +R+          ++D+ Y  +P 
Sbjct: 276 NLINIVGAVAVGINASASPEGVKSAIQEFRGVK---RRFEYKGESKGVIVLDD-YAHHPT 331

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            + A IS   +  P   GR+I V          +++F    AE L L     V+L   + 
Sbjct: 332 EIAATISAAREYYP---GRQIFVAFQ-PHTYSRTKTFLAHFAEALKL--ADKVFLLDVYA 385

Query: 412 LALKDALPR---------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              +                +      ++     I   LVD  V++   +       L  
Sbjct: 386 AREQPDPDLDLDTLLKMIGNNSERVGNVEEASQIIPRFLVDNSVLITMGAGDV--TNLGP 443

Query: 463 LLLEEF 468
            +LEEF
Sbjct: 444 KILEEF 449


>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
          Length = 450

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|237742552|ref|ZP_04573033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
 gi|229430200|gb|EEO40412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
          Length = 454

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 49/353 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF   E
Sbjct: 112 KTKIIAITGTNGKSTTTAKISDMLNHAGYRAAYAGNIGRSLSE---VLLKEKDLDFISLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P+I++I  + P H+  ++  +E    K  I +   +      N
Sbjct: 169 LSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKFNITKNQTEDLYFIEN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     ++ ++  +  K I S  K K AD  ++  K C  E S ++V           
Sbjct: 225 IDDV---EIEKRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENSIIDVD--------KL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +    IL  D +   + L +  P E    R     N G    I++S
Sbjct: 273 SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLE---HRTELFFNYGKVKFINDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI              I + G   +  +L+      LAE++   NI  V+
Sbjct: 330 KATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKK-NIKEVY 375

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
           L G     ++  L +   + Y +      + +++SL D          +V+++
Sbjct: 376 LIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFTKESNEVILL 425


>gi|282880606|ref|ZP_06289312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305501|gb|EFA97555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 443

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 119/356 (33%), Gaps = 30/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      I  ITGS GKTTT  ++     +        G+    + + +   
Sbjct: 90  ISEIEFAGRYTHSKMIC-ITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIGRSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                 ++ I EL    L  +    +  +  IA++  I P HL  +   ++    AK  I
Sbjct: 146 -AEDPHEYYIIELSSFQLDNM----YKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   +  +     DD   +    K     ++  +S  K K +   + + +   E+    
Sbjct: 201 IQNQTEKDSFIYWNDDPIIKRELQKYDIKAVQCPFSELKEKGSIGYIEEGQYTIEK---- 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L       I     D   K+LS F   E    R    
Sbjct: 257 -PTPFNMEQEALSLTGKHNVYNSLAAGIATDIAGIRNDVIRKSLSDFSGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +   A+  ++          + +LG     G+   + +  + 
Sbjct: 313 CKVGGVEYINDSKATNVDACWYALESMNT-------PTVLILG-----GKDKGNDYQLIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E++    +  V+L   +     +     I V  + +M             GD V++
Sbjct: 361 ELVKKKCVGLVYLGADNTKLHNNFDSLGIPVRDTHSMKECVEACYEMARPGDTVLL 416


>gi|324993645|gb|EGC25564.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK405]
 gi|324995043|gb|EGC26956.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK678]
          Length = 444

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 165/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG   +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGGFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D+D   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLDLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDKGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus suis GZ1]
          Length = 398

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 136/384 (35%), Gaps = 50/384 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + +S DSR+++P   FFA KG  +   +F+  A++ G    V   D       + I
Sbjct: 32  DVQFDALSYDSRTVSPTTLFFA-KGLAFKK-EFLEKAIEAGLDFYVSEIDY-----EVGI 84

Query: 84  PVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--AC 139
           P   V D+  A++   +      + +  ++A TG+ GKTT        L   KK    + 
Sbjct: 85  PAIIVHDIKQAMSLIAMDFHGHPQKQLKLLAFTGTKGKTTAAYFAFNILKQSKKPAMLST 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFL---THLVRPHIA 187
           + +  +      +    P  +D           GM+HL        +L    + +   + 
Sbjct: 145 MNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMTHLIMEVSSQAYLVKRVYGLTFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + +    +  + +N     FE++K +       
Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYHKRLLMDN---SRAVIVNAGMDHFEVVKEQVS----- 256

Query: 246 TIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                  SK+ DF       Q S+ +  +    GK +       IG    +N +      
Sbjct: 257 -------SKDHDFYGPTSENQISQSAGFDFTATGKLAGHYDIQLIGGFNQENAIAAGLAC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A ++     ++        G+        G    +D  Y  N  S+K  I V+ + 
Sbjct: 310 LRLGASLEDIHTGIAQ---TNVPGRMEVLTQQNGAKVFVD--YAHNGDSVKKLIDVVLE- 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQS 387
             H  G+   +LG     GE  + 
Sbjct: 364 --HQTGKVFLILGAPGNKGESRRK 385


>gi|227889515|ref|ZP_04007320.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849993|gb|EEJ60079.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus johnsonii
           ATCC 33200]
          Length = 437

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 119/356 (33%), Gaps = 46/356 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L   L  +  T   IG             +   D  F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR---------GKGVADSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    ++ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       ++   + L  F   +    R     + G  ++ID+ Y 
Sbjct: 266 FGDHSILNTTAVIAVAYTEKVPMNDIKEGLLTFKGAK----RRFAEKDFGDVSVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WL 406
            +P  M+A I    Q  P  E   + V          ++ +  D  E+L   + ++V  +
Sbjct: 321 HHPTEMRATIQAARQKFPDKE--LVVVF--QPHTFSRTKKYQKDFEEILRDVDKAYVTPI 376

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 A  D              V   + +  L    ++      VVV   +   
Sbjct: 377 YASAREASGDISSEDLVNNIPGSEVIDLDNIADLTKHKKA------VVVFMGAGDI 426


>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
          Length = 465

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 122/379 (32%), Gaps = 36/379 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +  +  +PV     +                  +IAITGS GK+TT  ++   L+ + + 
Sbjct: 89  AAWAAGVPVDNDIGLFFQSFATQSWDNFDQIPKVIAITGSNGKSTTSALMHHILTRVGRP 148

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G+    +          +D +  + EL        R LT    P +AV T ++P H
Sbjct: 149 SQLAGNIGRGVLDIDP----AIDGEVVVLELSSYQTDLARSLT----PDVAVFTNLSPDH 200

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKN 255
           L    G+    +AK  +F          +  D++   +L  + +       +     +  
Sbjct: 201 LDRHGGMGGYFAAKRRLFAEGGPD-RAVIGVDEAEGRMLANQLAEGPVDDRVIRVSVAGK 259

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  W    ++ ++    +GK      +  V    G H  QN  M    +  L    
Sbjct: 260 --LTGMGWNIFVKKGFLAETRKGKQVASIDLRSVAALPGVHNHQNAAMVYAALRTLGLAP 317

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  + FH   G   R +          I++S   N  S   A+     I       
Sbjct: 318 KVI---EAGFHDFAGLPHRSQPVGEIDGVKYINDSKATNVDSAAMALKAFKNI------- 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           R  V G   E G  S         V  + +++  ++ G         L    HV    TM
Sbjct: 368 RWIVGGQAKEGGISSL--------VPLMGDVTRAYVIGTDPKPFLADLTEIDHVI-CNTM 418

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           D       S    GDVV++
Sbjct: 419 DEAVKQAASDANAGDVVLL 437


>gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
          Length = 483

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 158/461 (34%), Gaps = 65/461 (14%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR +     FFA KG  +   +++  AVQ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSRDVDSSTLFFA-KGATFKK-EYLEQAVQLGLPFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
           IP   V D+  A++   +        K  IIA TG+ GKTT        L    K   ++
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTTAAYFTYNILKQSHKPAMFS 144

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFL---THLVRPHI 186
            + +  +      +    P  +D           GM+HL        +L    + +   +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVDNGMTHLIMEVSSQAYLVDRVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+        E+    K  +   +  +  + +N    +F+++  +      
Sbjct: 205 GAFLNISPDHIGPIEHPTFEDYFYHKRLL---MTNSKAVVVNAGMDYFKVVTQQVA---- 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
                    K  DF     +   E     +  + GK +       IG    +N L     
Sbjct: 258 --------DKPHDFYGSGSENTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENALAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K +S        G+        G    +D  Y  N  S++  +SV+ +
Sbjct: 310 CLRLGTSLKDIKKGIS---ETSVPGRMEVVTQANGAKVFVD--YAHNGDSLEKLLSVVEE 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSG----FHVLALKDA 417
              H +G+   +LG     G   +S   D A ++ +  N++ +  +         A+ + 
Sbjct: 365 ---HQKGQLYLILGA---TGNKGESRRADFARIINAHQNLNVILTADDPNYEDPQAIAEE 418

Query: 418 LP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
           +     RS+ +   +    +   +  +  + D V++  K +
Sbjct: 419 IASQITRSLDIQ-VDREKAIAKAMLLTKNENDAVIIAGKGA 458


>gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
 gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
          Length = 483

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 158/480 (32%), Gaps = 69/480 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++           P+   + IS DSR I     FF +KG  +   +F+  A++ G 
Sbjct: 16  NFREIIDGEHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFKK-EFLEKAIESGL 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTK 123
              V   D       + IP+  V+++  A  L         + K   +A TG+ GKTT  
Sbjct: 74  TFYVAEKDY-----QVGIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAA 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 L       A I + N  +               L L +M            I E
Sbjct: 129 YFAYHILKQ-GYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAAANGMTHLIME 187

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +        R   + +   + V   I+P H+        E+    K  +   L+ +  + 
Sbjct: 188 VSSQAYLVGR--VYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---LKHSRYVI 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N   + F L+K +           +G  K +D Q+   K           L GK +   
Sbjct: 243 VNSQMNHFALVKEQVADQPHD---FYG--KYSDNQIVNSKA------FSFDLTGKLAGHY 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N +        L A      K           G+        G    +D
Sbjct: 292 DIQLTGSFNQENAVAAALACLQLGASQTDIQKG---IVQTTVPGRMEVLVQKNGAKVFVD 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S++  +SV+ +   H +G  I +LG     GE  ++   D   V++ +    
Sbjct: 349 --YAHNRDSLEKLLSVVEE---HQKGTLILILGAPGNKGESRRA---DFGYVINAHPELQ 400

Query: 404 VWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
           V L+               +   + R +++   +    +   +  +  + D V++  K +
Sbjct: 401 VILTADDPNNEDPQLISQEIAHHIKRPVNII-VDRKQAIQKAMSLTQSENDAVIIAGKGA 459


>gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
 gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
          Length = 483

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 58/425 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FFA KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSQISFDSREADKSTLFFA-KGATFKK-EYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
           IP   V D+  A++   +       +   IIA TG+ GKTT        L    +   ++
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHRPAMFS 144

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFLTH---LVRPHI 186
            + +  +      +    P  +D           GM+HL        +L      +   +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQAYLVERVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+        E+    K  +      +  + +N    +F ++  +      
Sbjct: 205 GAFLNISPDHIGPIEHPTFEDYFYHKRLLMAN---SKAVVVNAGMDYFNVVAQQVANTPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
                       DF  +      E     +  + GK +       IG    +N +     
Sbjct: 262 ------------DFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K ++        G+        G    +D  Y  N  S++  +SV+ +
Sbjct: 310 CLRLGTSLADIQKGIAQ---TSVPGRMEVITQTNGAKVFVD--YAHNGDSLEKLLSVVEE 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
              H +G    +LG     G   +S   D A V++ +   HV L+          A+ + 
Sbjct: 365 ---HQKGDLHLILGA---TGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQAIAEE 418

Query: 418 LPRSI 422
           +   +
Sbjct: 419 IASQV 423


>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
          Length = 770

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 139/394 (35%), Gaps = 34/394 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   + +     V   G+  D+  +A  + +  + G    G   +  A +
Sbjct: 225 MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADK 281

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +GA  VV +  +          +  VDD+  AL  L      R      +I + G+ G T
Sbjct: 282 RGAVAVVADQTVDIEGTLACRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-----------------IGVPLTLARMPVDVDFG 163
           TT  ++     ++      +G    +                 I V   +A M  +    
Sbjct: 342 TTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGAEA 401

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
                 +       +   +   IAV+T +  A        EE  ++ A +F  +   +  
Sbjct: 402 ALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPERH 461

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD       A+         YSF ++K AD    K++    ++ + VQ     +
Sbjct: 462 RKVVNIDDPSAPFFAAQGGQDVPVVTYSF-ENKKADVHTLKYQLSLFETEVLVQTPHGIL 520

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    +G     N+L ++ +   + A ++  +K +       G   R      +  F +
Sbjct: 521 EISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPG---RCELIDEEQAFGV 577

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           I + +   P S+   +  + ++ P    R + VL
Sbjct: 578 IVD-HARTPESLSRLLDGVKELGP---RRIVTVL 607


>gi|120404494|ref|YP_954323.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
 gi|189029002|sp|A1TAW7|MURC_MYCVP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119957312|gb|ABM14317.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 478

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 91/420 (21%), Positives = 156/420 (37%), Gaps = 38/420 (9%)

Query: 53  GHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD   L  +  G   VV     +         V      +  L + AV ARL +  T +
Sbjct: 65  GHDPSALDMLAGGPTAVVTTHAAIPKTNPEL--VEARRRGIPVLLRPAVLARLMAGHTTL 122

Query: 112 AITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            +TG+ GKTTT  ML +AL       ++A  G            A        G   +  
Sbjct: 123 MVTGTHGKTTTTSMLIVALQHSGFDPSFAVGGDLGE--------AGTNAHHGSGSSFVAE 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +   +   L +  RP I V+T I   HL  F  +E            ++  G + +  DD
Sbjct: 175 ADESDGSLLEY--RPDIVVVTNIEADHLDFFGSVEAYTEVFDRFAGRIDPGGALVVCVDD 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQ--SWMEVQLQGKSMEVVH 285
                L  +    G++ +  +G +     D  L +W Q      + + ++ + + + +  
Sbjct: 233 PGARALAERLSGSGLR-VLRYGSTGTGALDATLLEWTQQGTGAVASIALRTEARPLTMRL 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HMA N L  L       AD+++ +  L+ F   EG  +R+    +     + D+ 
Sbjct: 292 SVPGRHMALNALGALLAAREAGADLESVLDGLAGF---EGVRRRFELVGSANGVRVFDD- 347

Query: 346 YNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAE---------V 395
           Y  +P  ++A ++ L  +      GR I V      +   + +F  +            V
Sbjct: 348 YAHHPTEVRATLTALRAVVDQAGSGRAIVVF--QPHLYSRTVTFASEFGAALSAADEVFV 405

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L +Y      L+G     + DA+  S  V Y      +   + +S+  GDVVV   +   
Sbjct: 406 LDVYAAREQPLAGVSGATVADAV--SAPVTYLPDFSAVAARVAASVAPGDVVVTMGAGDV 463


>gi|257466677|ref|ZP_05630988.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917830|ref|ZP_07914070.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691705|gb|EFS28540.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 447

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 129/369 (34%), Gaps = 38/369 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++  + S+  T          I V   L  +  +   G+ E  ++
Sbjct: 104 IAVAGTHGKTTTSSMMSAVMLSLDPT----------IVVGGILPEIGSNAKVGMGEYFIA 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       ++P  AV+T I   HL     +E I  +  +  E  E+   + +  D +
Sbjct: 154 EADESDNSFLFMKPKYAVVTNIEEDHLETHGNLENIEKSFRQFVEQTERK--VLVCTDCA 211

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               + +++       I ++G    A+   +  +  + ++  EV +QG++         G
Sbjct: 212 NVRAVFSENE-----KIMTYGMDYEANIMAKNVEIVNGKTSFEVLIQGENQGRFYISIPG 266

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +    +     +       + H +  + +      +Q     I + Y  +
Sbjct: 267 KHNILNSLPVIYFSLLFGVPKEEIQ--DKLLHFRGSKRRYDVLYWDQENNRKIIDDYAHH 324

Query: 350 PASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           P  ++A +  +             PH   R   +L       E           +L +Y+
Sbjct: 325 PTEIQATLKGVKSIEKGKIIGIFQPHRYSRVHFLLERFAHCFEGLDEL-----ILLPIYS 379

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSC-GFY 458
                 SG     +   +P +I V   E+ + +   I     + + + +   +       
Sbjct: 380 AGEQNESGVSEKDIAKIIP-TIPVTCIESKERVVERIMEETREDNHIFIFMGAGDISKLA 438

Query: 459 -RLINLLLE 466
             + + L +
Sbjct: 439 HEVADRLQK 447


>gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 483

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 122/423 (28%), Gaps = 42/423 (9%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA  V+ +   +A+     + V  + D +  L              ++A+TG+ 
Sbjct: 45  EDALAQGAAAVLTDDRELAASDPRIVFVPALADEVSGLAASF-YGHPGRALKVVAVTGTC 103

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNN---------------HIGVPLTLARMPVDVDF 162
           GKT+T          +    A +G+                  H  +   LAR   +   
Sbjct: 104 GKTSTTFFTAQLADRVGLGAAVMGTLGMGRLGDLRDSGHTTPQHAMLQRELARYVDEGLG 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +     S   E+  L   V     V T +   HL     +E  A+AK  +F+       
Sbjct: 164 LVAIEASSAGLEMDRL-GGVPIDAGVFTMLGRDHLDRHRTMEAYAAAKWRLFDAYAPE-F 221

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGK 279
             L  DD   E    +       T++        D     +   +Q      + +     
Sbjct: 222 AVLGADDPTGEAWARRLRERCAVTVFGAEPRPELDLPRVHIEGLEQQRAGLGVRLASTWG 281

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V    +G   A N+   L  ++ L       + A        GR + Y         
Sbjct: 282 EAAVSIRALGAFQAHNLAAALATLARLGVPWPELVVACEGLSGPPGRMEPYAAP----GT 337

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L    Y   P S+  A+     ++P   GR   V G     G        ++    +  
Sbjct: 338 PLCLIDYAHTPESLTFALDSARALAP--GGRVWCVFGC---GGGRDSGKRGEMG-AAAEG 391

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           +   V ++  +           A+   +                          DVVVV 
Sbjct: 392 SADVVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGERGQAITRALDEAAPEDVVVVA 451

Query: 450 -KS 451
            K 
Sbjct: 452 GKG 454


>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 434

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 130/346 (37%), Gaps = 38/346 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+AITGS GK+T   ++     +        G+          L+ +    D  
Sbjct: 100 READKPIVAITGSNGKSTVTTLVAEMAKAAGLRVGMGGNIGIP-----ALSLLNQQHDLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H++ +  +++   AK  I+   +   T 
Sbjct: 155 VLELSSFQL----ETTYSLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQ---TA 207

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D+              +   SFG++ +AD+ L   K  + ++++    +      
Sbjct: 208 VINAEDAL-----TLPTTQRPQKQVSFGEN-HADYWL---KTENNKTYLMAYDEAVLACD 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +      ++     AL  F    G   R++ A        I+
Sbjct: 259 EMKLTGRHNYMNALAAIALAQAAGINLTGIRTALCAFG---GLEHRFQVAHIADGVRWIN 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L        G+   +LG   +  + S     +LA +++  +I +
Sbjct: 316 DSKATNVGSTVAALTGL-----QVAGKLHLLLGGDGKGADFS-----ELARLINQPHI-Y 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S      +TM+     I+  L  GD+V++
Sbjct: 365 CYCFGRDGKQLAALSSQS---QLFDTMEHAIAAIRPQLQAGDMVLL 407


>gi|332638562|ref|ZP_08417425.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella cibaria KACC
           11862]
          Length = 446

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 117/313 (37%), Gaps = 35/313 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T I + G+ GKT+T  +L   L+ I  T   IG             +   D  F IFE
Sbjct: 105 QFTSIGVAGAHGKTSTTGLLAHVLAGIAPTSYLIGDG---------TGKGVPDARFFIFE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   ++G++++ SA  +    ++K   IF  
Sbjct: 156 A-----DEYRRHFQDYTPDYAIMTNIDFDHPDYYTGVDDVRSAFEDFGNHVKKG--IFAW 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD     ++          +Y +G + +  DF  +  K+ +  S  +V    + +    
Sbjct: 209 GDDEQLRKMQVDV------PVYFYGTNPETDDFYAKDIKRSTTGSSFDVYYHDEFLGNFE 262

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +      D D   K L  F   + R    +     G  T+ID+
Sbjct: 263 VPLFGQHGVLNSLAVIAVAYFEKIDGDLVRKELLSFKGVKRRFTEKQV----GPVTIIDD 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P+ + A +    Q   +     +AV          + ++  D A+ L L     V
Sbjct: 319 -YAHHPSEITATLDAARQ--KYPGRELVAVF--QPHTFSRTIAYQDDFAKSLEL--ADKV 371

Query: 405 WLSGFHVLALKDA 417
           +L+     A + A
Sbjct: 372 YLTEIFASAREQA 384


>gi|227082660|ref|YP_002811211.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|298500631|ref|ZP_07010435.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
 gi|227010548|gb|ACP06760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|297540800|gb|EFH76857.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
          Length = 451

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 146/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V    V S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNVMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
 gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
          Length = 452

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 126/343 (36%), Gaps = 37/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +I ITGS GK+T   ++   L+      A  G+       P  LA +  D++  + E
Sbjct: 114 KAPVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNL-----SPAALAILDDDIEVYVLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L      ++ +   +AV+  +   H+ +   +    +AK  IF    K   + +N
Sbjct: 169 MSSFQL----ERSNALGLDVAVVLNVTADHIDHHGSMAAYHAAKHRIF---RKAKAVVVN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + L   +       +  +G   + D    ++K  ++  WM V       E+   
Sbjct: 222 DDDVLTQPLVDST-----VQVTRYGAKAHRD---AEFKLLNDALWMGVSKIIDVSEMALR 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L+   I +      +     L  F    G   R R        T I++S 
Sbjct: 274 --GRHNHLNALVACAIAACFDVAAEAMAATLRTFS---GLPHRCRVVQTIAGVTYINDSK 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N   + AA++ +  I P+ +   + + G + +  + S      L   ++ Y +  V +
Sbjct: 329 ATN---VGAALAAIEGIGPNSD--LVLLAGGLGKGQDFSA-----LVPAINRY-VREVIV 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L  ALP        E +             GD V++
Sbjct: 378 FGEAAGELA-ALPLLRPAIQVENLQQAVSRAAEIAQPGDTVLL 419


>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|122063239|sp|Q3AAE4|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 451

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 122/354 (34%), Gaps = 40/354 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    KA IIA+TG+ GKTTT   +   L          G+    +   +       + D
Sbjct: 102 AYKELKAPIIAVTGTNGKTTTTSWIGEVLKIAGFKTLIAGNIGYPLIEAV-----EEEWD 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               E+    L  I+      +P +AV+  + P HL     +E    AKA IF   ++T 
Sbjct: 157 AVSLEVSSFQLETIK----SFKPKVAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTD 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNYDD     L  K+       ++ F + +       +     ++  + V+  G   
Sbjct: 213 VTVLNYDDPRIRSLGRKTPG----RVFYFSQKEE-----LEEGVFVKKGKIVVRSLGVEE 263

Query: 282 EVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           E++        G H  +N L T+              + L  F        R        
Sbjct: 264 EIIDIENLPLPGPHNLENALATVAACWSFGVSGKNIERGLRNFQGVA---HRLEKVAEIN 320

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   NP S   A++         E   + + G     G    +   +LA  + 
Sbjct: 321 GVLYVNDSKGTNPDSTIKALNS-------YERPIVLIAG-----GRNKGNSFGELAREIR 368

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
              +    L G     LK+AL    +  Y   E+ +      +     GDVV++
Sbjct: 369 E-KVRFTILVGECREELKEALEMVGYDKYVVAESFEDAVKKAKELARPGDVVLL 421


>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           18P13]
          Length = 462

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 117/346 (33%), Gaps = 36/346 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I  +TGS GKTTT  +++  L+   +     G+    +   L L     + D  + EL 
Sbjct: 117 RIYGVTGSDGKTTTTTLISEMLAKTGRRVYKGGNIGKAL---LPLIETIREEDAAVVELS 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P +AVIT I+P HL     +EE    K  +           LN D
Sbjct: 174 SFQLISMRR-----SPDVAVITNISPNHLDVHGTMEEYIGCKVNLIAHQNAYSKTVLNLD 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           ++    L  +     +         +        W   +E    +  ++ + +       
Sbjct: 229 NAQTAALAEQVRGRLLWFTRQQKPERGTFLDAEGWLCYAEAGKTQRIVRAEDI----RIP 284

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L  +  V       +T ++    F   E    R             ++S   
Sbjct: 285 GLHNVENYLAAIAAVWG-EVPAETIVEVAKTFGGVE---HRIEFVRELDGVKWYNDSIAT 340

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  + A +   +Q       R I + G   +           +AE ++   +  + L G
Sbjct: 341 SPTRVLAGLRSFNQ-------RLIVIAGGYDKKIPFEP-----MAETVNQR-VKILILMG 387

Query: 409 FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                ++ A+       P  + + ++ +M+      +     GD+V
Sbjct: 388 VTAPKIEKAVTEDPSYDPAKLQIVHAASMEEAVQKAKELAQPGDIV 433


>gi|254455302|ref|ZP_05068731.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082304|gb|EDZ59730.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 464

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 135/379 (35%), Gaps = 50/379 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I + GS GKTTT  ++       K     I G   N I     L +     D+ I E   
Sbjct: 111 IVVVGSHGKTTTTSLIASIFQETKIDPTIINGGVINSINNSAKLGK----SDWSILEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      + P  ++IT I   H+  +  + E+ S      + +   G  F+  DD
Sbjct: 167 SDGSFV-----YIPPTYSIITNIDREHMDYYRSMNELNSYFLNFVKKVPSFGKSFICLDD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVV--- 284
                L  K      K  YS+G  + ++F ++  KQ  + S  +  ++L  K  +++   
Sbjct: 222 KNNRHLIKKIEN---KNFYSYGLDQKSNFCIKNIKQHKDYSQFDLKIRLPNKKNQMIKKF 278

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  +N +  + +   +   V    K L  F   +G  +R+            D
Sbjct: 279 RIPLLGNHNIKNSVAAIAVSLTVGLSVLNIKKGLKNF---KGVQRRFNKIFTLNKVDFFD 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSF-HIDLAEVLSLYN 400
           + Y  +P  +   +  +  +    E  +I +     +  + +L   F H       +  N
Sbjct: 336 D-YAHHPTEIMEVLDGIKNVYKDYE--KICIFQPHRISRLKDLKTEFSH-------AFKN 385

Query: 401 ISHV-----WLSGFHVL-------ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVV 447
              V     + +G  +          K  +  S + +   +    L  +I++S+    +V
Sbjct: 386 ADKVILFPIYTAGEKMKLGFSYLNFAKQIIKNSKVQLILVDNKIQLAKYIKNSIYGKKIV 445

Query: 448 VVKSSNSCG--FYRLINLL 464
           +   + S       L N L
Sbjct: 446 IGMGAGSISTWMRELPNHL 464


>gi|78187951|ref|YP_375994.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
 gi|109892718|sp|Q3B130|MURC_PELLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167853|gb|ABB24951.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 473

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 133/392 (33%), Gaps = 48/392 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIG 141
           IPV   D++LG L +             I + G+ GKTTT  M+   L    ++    IG
Sbjct: 91  IPVVKRDEMLGELMRYKSG---------ICVAGTHGKTTTTAMIATMLIESGESPTVMIG 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             ++++     +     +  + + E        +R       P IAV+ ++   H+  + 
Sbjct: 142 GVSDYLKGSTVVG----EGRYMVIEADEFDRAFLRLT-----PTIAVLNSLESEHMDTYG 192

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++E+  +  E    +   G +  + D      +    +    + + + G  + AD    
Sbjct: 193 TLDELKRSFIEFANKVPFYGRVICSVDWPEIRRIIGSLN----RRLTTVGIEEPADVTAG 248

Query: 262 KWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  ++   +   G     V  +  G H   N L        L  + +  I   +  
Sbjct: 249 DIVMDHGRATFTITAFGTDYPGVCLNVPGRHNILNALSAFATGLELGIEPERLI---AGL 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G  +R++         ++ + Y  +P+ +KA +       P  + R IAV      
Sbjct: 306 GRYSGMRRRFQVKFRDSRGLMVIDDYAHHPSEVKATVKAARSGWP--DARVIAVF--QPH 361

Query: 381 MGELSQSFHIDLAEVLSLYN---ISHVW--------LSGFHVLALKDALPR--SIHVHYS 427
           +   +  F  +    LS  +   ++ V+          G     + +A+ R     V + 
Sbjct: 362 LFSRTLEFADEYGWALSRADGVYVAAVYPSREKQEDFPGVDGALVAEAVRRAGGRQVAFV 421

Query: 428 ETMDGLFLFIQSSLVD----GDVVVVKSSNSC 455
              D L   + +   +    G +++   +   
Sbjct: 422 PDRDELLAAVLNEGAEPAPGGTILLFMGAGDI 453


>gi|306830842|ref|ZP_07464004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426865|gb|EFM29975.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 452

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 129/352 (36%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A + S A II ITGS GKTTT  M+   L++  K+    G+          +A+   D D
Sbjct: 107 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFP---ASEVAQTATDKD 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PHIAVIT + P H+      EE  +AK  I + +    
Sbjct: 164 ILVMELSSFQLMG----TDTFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTADD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K+ A     +  F  ++  D                +  +G+++
Sbjct: 220 FVVLNFNQDLAKELAQKTVA----KVVPFSTTEKVDGAYLDGD--------TLYFKGEAI 267

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +     D   + L+ F   +    R +        
Sbjct: 268 MKASEIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHFGGVK---HRLQALGEINGV 324

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + N  + + A+S           + I + G   + G        D+       
Sbjct: 325 KFYNDSKSTNILATQKALSGFE------NSKVILIAGG-LDRGNEFDELVPDI------T 371

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +K A  ++ +V Y +   +             GDVV++
Sbjct: 372 GVKLMVILGESAPRVKRAADKA-NVPYVDAKDVADAARIAYDKAEAGDVVLL 422


>gi|327474518|gb|EGF19923.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK408]
          Length = 444

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 133/372 (35%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE    
Sbjct: 106 LGVAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDE 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      
Sbjct: 210 QLRRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D+D   + L  F   +      R        T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGLDLDLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +P  + A +    Q            PH   R IA+L +  E    + S +     +  +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQI 373

Query: 399 YN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
           Y     V      V  L + + +   V   + +  L         D  V V   +     
Sbjct: 374 YGSAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|327462005|gb|EGF08334.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1057]
          Length = 444

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 161/490 (32%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDYEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGGFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVRVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 483

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 58/425 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FFA KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSREADKSTLFFA-KGATFKK-EYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
           IP   V D+  A++   +       +   IIA TG+ GKTT        L    +   ++
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHRPAMFS 144

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFLTH---LVRPHI 186
            + +  +      +    P  +D           GM+HL        +L      +   +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQAYLVERVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+        E+    K  +      +  + +N    +F ++  +      
Sbjct: 205 GAFLNISPDHIGPIEHPTFEDYFYHKRLLMAN---SKAVVVNAGMDYFNVVAQQVANTPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
                       DF  +      E     +  + GK +       IG    +N +     
Sbjct: 262 ------------DFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K ++        G+        G    +D  Y  N  S++  +SV+ +
Sbjct: 310 CLRLGTSLADIQKGIAQ---TSVPGRMEVITQTNGAKVFVD--YAHNGDSLEKLLSVVEE 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
              H +G    +LG     G   +S   D A V++ +   HV L+          A+ + 
Sbjct: 365 ---HQKGDLHLILGA---TGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQAIAEE 418

Query: 418 LPRSI 422
           +   +
Sbjct: 419 IASQV 423


>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
 gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
          Length = 467

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 125/356 (35%), Gaps = 27/356 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +AAR      IIA TG+ GKTT    L   L          G+    +   L + 
Sbjct: 107 IGEMELAAR-HVDVPIIAATGTNGKTTVTSFLGRMLEDQGLAVFVGGNIGTPLTAYL-MG 164

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            M  D  + + E+    L  I   T    P I++I  I+P HL  ++       +K  IF
Sbjct: 165 EMKAD--YLVVEISSFQLDTIERFT----PEISIILNISPDHLDRYADYSAYIHSKLRIF 218

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E      T+ LN DD    ++  K+      ++  +G  K A          +E     V
Sbjct: 219 ENQGAGQTVILNDDD----IVLKKTTPPEGTSVLRYGLKKGAGIDAF---IENEGILSAV 271

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +G+         G H  +N+L  +     L    +   K ++ F     R +R  CA 
Sbjct: 272 TEKGRFNLSAFSLPGAHNLENLLAVVLAGQALGLAPEPIQKTINAFKGLSNRLERV-CAN 330

Query: 335 NQGFFTLIDESYNAN-PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             GF     + YN +   ++ AA+  +           I + G     G    S +  L 
Sbjct: 331 GHGFLQKKVQFYNDSKATNVDAAVRAVQSFDKP----LILIAG-----GRHKGSNYQPLV 381

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 ++      G     L +A         +ETM             GDVV++
Sbjct: 382 N-ACKGHVKGAVFMGESASLLAEAFTGETPFSLAETMPDAVKKAAHMAESGDVVLL 436


>gi|56419653|ref|YP_146971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           kaustophilus HTA426]
 gi|62900465|sp|Q5L0X7|MURD_GEOKA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56379495|dbj|BAD75403.1| UDP-N-acetylmuramoylalanine D-glutamate ligase (D-glutamic acid
           adding enzyme) [Geobacillus kaustophilus HTA426]
          Length = 451

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 118/343 (34%), Gaps = 38/343 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGS GKTTT  ++   L +  +     G+      V   +AR      + + EL   
Sbjct: 115 IGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAREAKPGQWLVTELSSF 171

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  I       RP IAV+  I  AHL      E  A+AKA IF    +     +N DD 
Sbjct: 172 QLAGIDKF----RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYAVVNADDP 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + +   +  +    +    + A  Q     W         ++ L G+         
Sbjct: 228 LVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYWNGDPVIRIADIVLPGQ--------- 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             H  +N+L  +    +  A  +   + L+ F   +    R +           ++S   
Sbjct: 279 --HNLENILAAVAAAKLAGASDEAIRQVLATFSGVK---HRLQYVAEIDGRRFYNDSKAT 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + + A+S  +       G  + +L    + G    +   DL   L    +  V L G
Sbjct: 334 NILATQKALSAFA-------GEPVILLAGGLDRG----NEFDDLLPYLQQ--VKAVVLFG 380

Query: 409 FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
                +     ++    + Y + ++            GDV+++
Sbjct: 381 QTADKIGRIAQKAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
 gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
          Length = 545

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 84/486 (17%), Positives = 159/486 (32%), Gaps = 58/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +  A+     G      V GI+++SRS+   + + A+ G    G DF+  AV  GA 
Sbjct: 32  LASIGAAVGVAVPGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAV 91

Query: 67  LVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGSVG 118
            V+ +      +       +PV  VD     +  L+ A    +       T+  +TG+ G
Sbjct: 92  AVLTDDAGARLLALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNG 151

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDF-------------- 162
           KTTT   +   L ++      IG+     G     +L   P   +               
Sbjct: 152 KTTTTYFINSLLRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGA 211

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E+    +   R     V   +A  T +   HL     +++  + KAE+F        
Sbjct: 212 AAMEVSSHAISYQR--VDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTPARAR-R 268

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSM 281
             +  DD +   L   +  + + T+ + G++  AD+ +   +     +   ++   G  +
Sbjct: 269 AVVTVDDEWGRRLAG-TAGIPVTTLSTDGQAA-ADWAVATTEPRGLGTAFTLKGPDGAEL 326

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +     G     N  +   +V     D   +  A+     F        R +    Q  
Sbjct: 327 RLHTGLPGSFNVANAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPG--RMQLVAEQPA 384

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +    +  N  ++  A+  +    P  + R I V G     G+  Q     +  V + 
Sbjct: 385 AVV---DFAHNTDALARALEAVR--PPAPDSRLIVVFGA---TGQRDQGKRPAMGAVAAR 436

Query: 399 YNISHVWLS----GFHVLAL-KDALPRSIHVHYSETM----------DGLFLFIQSSLVD 443
              + +            A+  D L  + H   SE++          D            
Sbjct: 437 LADTVIITDDDPHDEDAAAIRADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGP 496

Query: 444 GDVVVV 449
            D ++V
Sbjct: 497 SDSILV 502


>gi|138894653|ref|YP_001125106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266166|gb|ABO66361.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 440

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 38/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  I ITGS GKTTT  ++   L +  +     G+      V   +A+      
Sbjct: 95  AYRISEAPFIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAKEAKPDQ 151

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L  I       RP IAV+  I  AHL      E  A+AKA IF       
Sbjct: 152 WLVTELSSFQLAGIDEF----RPRIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTAHD 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     + +   A  +    +    + A  Q              V   G+S+
Sbjct: 208 YAVVNADDPLVMDIVSSVRAQKVLFSVTKPLGEGAYVQ-----------DGTVYWNGESV 256

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H  +N+L  +    +  A  +   + L+ F   +    R +        
Sbjct: 257 IQIADIVLPGQHNLENILAAVAAAKLAGASNEAIRRVLTTFTGVK---HRLQYVAEVDGR 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A++  +          + +L    + G    +       +  L 
Sbjct: 314 RFYNDSKATNILATQKALAAFADEP-------VILLAGGLDRGNEFDAL------LPYLQ 360

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     +      +    V Y + ++            GDV+++
Sbjct: 361 QVKAMVLFGQTAAKIGRVAREAGIETVEYVDNVEKAVPVAFRLSEPGDVILL 412


>gi|254225932|ref|ZP_04919534.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
 gi|125621558|gb|EAZ49890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
          Length = 451

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHSKLLAALQQK 451


>gi|15642537|ref|NP_232170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587894|ref|ZP_01677650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|153817994|ref|ZP_01970661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|153822958|ref|ZP_01975625.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229507403|ref|ZP_04396908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229509672|ref|ZP_04399153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229516797|ref|ZP_04406243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229606910|ref|YP_002877558.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254851084|ref|ZP_05240434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262154693|ref|ZP_06028819.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
 gi|9657126|gb|AAF95683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547864|gb|EAX57949.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|126511429|gb|EAZ74023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|126519528|gb|EAZ76751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229345860|gb|EEO10832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229353146|gb|EEO18085.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229354908|gb|EEO19829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229369565|gb|ACQ59988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254846789|gb|EET25203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262030533|gb|EEY49171.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
          Length = 451

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|326692717|ref|ZP_08229722.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc argentinum KCTC
           3773]
          Length = 444

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 39/279 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + T IA+ G+ GKT+T  +L   L +I  T   IG             R   +  F + E
Sbjct: 103 QTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDG---------TGRGVPNSQFFVVE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E R       P  A++T I   H   +  I ++ +A ++    ++K   IF  
Sbjct: 154 A-----DEYRRHFKDYAPDYAILTNIDFDHPDYYHDINDVTAAFSDFAGNVKK--AIFAW 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
            DD     L+  +       +Y +G + +  DF     ++ ++ S  EV  +G+S+ E  
Sbjct: 207 GDDPHLRSLQPAAD------VYYYGTNTDRDDFVATNIRKSTQGSHFEVLFRGESLGEFA 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N +  + +  +   D++   + L  +   + R    + A      T+ID+
Sbjct: 261 VPLFGQHSILNAVAVIAVAYMEKVDLNLIREFLMTYQGVKRRFSEKQIA----DITVIDD 316

Query: 345 SYNANPASMKAAISVLSQ----------ISPHGEGRRIA 373
            Y  +P  + A +    Q            PH   R IA
Sbjct: 317 -YAHHPTEIDATLDAARQKYPNKQIIAIFQPHTYSRVIA 354


>gi|325696366|gb|EGD38257.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK160]
          Length = 444

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 88/490 (17%), Positives = 162/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDYEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGGFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R  V+  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSVNAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVRVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|325695121|gb|EGD37023.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK150]
          Length = 444

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 166/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG+  +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGSFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDKGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|227486694|ref|ZP_03917010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235282|gb|EEI85297.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 449

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 135/384 (35%), Gaps = 54/384 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL      IAITG+ GKT+T  M+   L+   K    +G+    +     L +M      
Sbjct: 99  RLFPDREKIAITGTNGKTSTTSMVAHILNECGKPAYAVGNIGEGV-----LWQMYEKKGV 153

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L +    T   +PHI  I  I   H+      ++  ++K ++    ++   
Sbjct: 154 FVEELSSFQLHD----TQAYKPHIGAILNIKEDHIDWHGSFDDYINSKLKLAANQDQGDY 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N++D   +       A     IY F         +       E + + ++  G  +E
Sbjct: 210 LVINHEDEISQKHIKDFKA----QIYEFSSQN-----IVDRGLFLEGNKICLRNGGCVIE 260

Query: 283 VV-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +        IG H  +N++  + +  +   ++   IKA+  F     R +  R      
Sbjct: 261 EILDVRDLSVIGRHNYENVMAAILLTYLYGLNLSEIIKAIKTFKSIAHRLEYVRTLS--- 317

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   N  S   AI            R I ++      G      + D  +   
Sbjct: 318 GIDFYNDSKGTNVDSSVKAIESFD--------RPILIIAG----GYDKHIDYTDFVKAFR 365

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVK-SSNS 454
                 + + G     LK AL     + Y   + M+       S   +GDVV++  +S S
Sbjct: 366 KNG-KLMVIMGATKEKLK-ALCEKYDIKYILVKDMNEAINTAYSKGENGDVVLLSPASAS 423

Query: 455 CGFYR-----------LINLLLEE 467
              Y+           L+N L E+
Sbjct: 424 WDMYKSFEVRGDEFKDLVNRLEEK 447


>gi|119953594|ref|YP_945804.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia turicatae 91E135]
 gi|119862365|gb|AAX18133.1| UDP-N-acetylmuramate--alanine ligase [Borrelia turicatae 91E135]
          Length = 486

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 141/380 (37%), Gaps = 42/380 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+      ++  K   I + GS GKTTT   L +  +S+      I      +      +
Sbjct: 119 LSYPEFIGKISKKYYSIGVAGSHGKTTTAAFLGLLFNSLGLQPNVI--LGASVKDFGDKS 176

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    +  I E       E R       P++ V+T I   H+  F   E + +   +  
Sbjct: 177 SLVGQSNIFIAE-----TCEYRNHFLHFSPNMIVLTNIDYEHVDFFENYEAVENVFLQYI 231

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L+K G + +N D+     +K +     IK ++S G +  ADF++ +++   E    + 
Sbjct: 232 NNLKKNGILIINADEVNLLKIKNRILRKDIK-VFSVGFNSLADFKIERFELIDEFLKFDF 290

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-----SVFHPKEGRGKR 329
                 +++       H   N  ++L  V +   +    + +       +     G  +R
Sbjct: 291 L---GGIDIRLRSPLMHNVLNFALSLLAVKLFFEEHKKLVWSFDDRIKMMAKEYMGIKRR 347

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +     +D+ Y  +P  +++    L  +    +GRRI +L  M      ++   
Sbjct: 348 MEFIMEKDGVIYLDD-YAHHPKEIES---TLLGLKTFYKGRRI-ILDFMPHTFTRTKVLF 402

Query: 390 IDLAEVLSLYNISHVW----------------LSGFHVLALKDALPRSIHVHYSETMDGL 433
            +  +VLS  N+  +                 LS    LALKD    + +V++ + +   
Sbjct: 403 GEFVKVLS--NVDVLILHNIYLSVREDFNPNKLSKELFLALKDL---NQNVYFFKEVVDA 457

Query: 434 FLFIQSSLVDGDVVVVKSSN 453
             FI+  L   D+ V   + 
Sbjct: 458 VDFIKGLLKRNDLFVTMGAG 477


>gi|288553163|ref|YP_003425098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
 gi|288544323|gb|ADC48206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
          Length = 450

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 129/384 (33%), Gaps = 45/384 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  +  +V      +IPV    ++   L++          A +IAITGS GKTTT  ++ 
Sbjct: 82  IPYHNPIVKEAVRRNIPVITEVELASVLSE----------ADMIAITGSNGKTTTTTLIY 131

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L +  K     G+      V   +A+     D  + E     L      T    P+++
Sbjct: 132 EMLKNSAKNPLIAGNIGT---VSCDVAKGAASDDVIVLEASSFQLLG----TENFHPNVS 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  +  AHL      EE  +AK++I     +      N DD     +  KS A  +   
Sbjct: 185 VLLNLFDAHLDYHGTKEEYVAAKSKITANQTEDDVFVYNLDDPLVSQVAEKSKAAKLP-- 242

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F   +                + + QL     EVV    G H  +N+L  +G    + 
Sbjct: 243 --FSTKE---VVSEGVYVNQGSIYFKDQLIIALSEVVLP--GSHNVENILAAVGAAMTMG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A V      L  F   E    R +           ++S   N  + K A+   SQ     
Sbjct: 296 AKVTQIQHVLKTFSGVE---HRLQFVKKINDRLFYNDSKATNILAAKKALEAFSQ----- 347

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVH 425
               + +L    + G              SL N+  +   G     L      +    V 
Sbjct: 348 ---PVILLAGGLDRGNEFDEL------ASSLSNVKALVAFGETKEKLARTAKGAGIAEVE 398

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
           Y++ +            +GDV+++
Sbjct: 399 YADRVKDAVECAYRLSEEGDVILL 422


>gi|260495142|ref|ZP_05815270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
 gi|260197199|gb|EEW94718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
          Length = 432

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 132/353 (37%), Gaps = 43/353 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R K  +IAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF 
Sbjct: 87  KRMKTKVIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIGRSLSE---VLLKEKDLDFI 143

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +    
Sbjct: 144 SLELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDFYF 199

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSME 282
             N DD     ++ ++  +  K I S  K K AD  +   K C  + S ++V        
Sbjct: 200 IENIDDV---EIEKRAKQVKAKRI-SVSKFKKADIFVENDKICHGKDSIIDVD------- 248

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L  +    IL  D +   + L +  P E    R     N G    I
Sbjct: 249 -KLSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLE---HRTELFFNYGKLKFI 304

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S K AI              I + G   +  +L+      LAE++   NI 
Sbjct: 305 NDSKATNVDSTKFAIEA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIK 350

Query: 403 HVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD--GDVVVV 449
            V+L G     ++  L +       +H    ++     ++        +V+++
Sbjct: 351 EVYLIGVIADKIESELKKVGYEDSRIHKLVNLENSLQDMKKRFTKDSDEVILL 403


>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus YJ016]
 gi|60390522|sp|Q7MNV3|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           YJ016]
          Length = 442

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 128/343 (37%), Gaps = 35/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++     A  G+          L  +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP-----ALDLLEQEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+++   AK  IF+  +      +N
Sbjct: 162 LSSFQL----ETTTSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHG---VVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     SH      + +FG    +D +         +SW+    Q         
Sbjct: 215 RDD--RQTYPETSHGQQSLALVTFG----SDDKEFGVMSHQGESWLSYNQQPILASRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +++    D     K LS      G   R +   +      +++S 
Sbjct: 269 LVGQHNVANVLVVLALLTCAGID---YRKGLSALKSYTGLTHRCQVVADNRGIKWVNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS +AA+S L     +  G+   ++G   +  + S      L  +L+  N+  +  
Sbjct: 326 ATNLASTQAALSGL-----NCAGKLYLLVGGDGKGADFSP-----LKPILAQLNL-QLCC 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P        E M+ +   I   L  GD+V++
Sbjct: 375 FGADGD---QFMPLHASATRFERMEDVIEHISPQLQSGDMVML 414


>gi|307718907|ref|YP_003874439.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM
           6192]
 gi|306532632|gb|ADN02166.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM
           6192]
          Length = 489

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 141/448 (31%), Gaps = 55/448 (12%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           HDF  H +      ++ +               L IP +     LGA +    +A     
Sbjct: 61  HDFSPHHLHAPWHALIHSAAYPPTHPQLAEAARLGIPCYSYPRALGAYSTHFRSA----- 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
                I G  GKT+T  +    L ++    A +      +         P    + + E 
Sbjct: 116 ----GIAGVHGKTSTTALAGTLLRALSLPAATLTGSAVPLWGGRATLTHPAP-RYFVAE- 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E R       P   V+T++   HL  +   E+I +A  E    L   G +    
Sbjct: 170 ----TCEYRRHFLHFSPTWIVLTSVEEDHLDYYPTYEDIFAAFLEYARLLPPHGALVYCA 225

Query: 228 DDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           D      L     A   + T+  +G++    F++    Q        +      +    H
Sbjct: 226 DQPGAARLAHTLAAERPELTLIPYGRTAPGPFRITAVHQHPGGQTARLAAG---LSFTLH 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK----------RYRCALNQ 336
             G HM  N    L ++S++  D   A    ++        +          R    + +
Sbjct: 283 VPGTHMLLNAAAALALISLIAQDAGRAPSPEALLTEYGPTLQDALASYTGTRRRSEVVGE 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L  + Y  +P +++A +       P   GRRI +L  M      + +   + A   
Sbjct: 343 ACGILFLDDYGHHPTAIRATLEGYRSFYP---GRRI-ILDFMSHTYSRTAALLHEFARSF 398

Query: 397 SLYNISHVW------------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              +I  +             ++G  +     A+     VHY   +   F +    L  G
Sbjct: 399 EPADIVILHKIYASAREKAGAVTGEDLYRAAKAV--HPRVHYFHEIMDAFEYCTRLLGPG 456

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           D+ +   +     ++L   L   + A +
Sbjct: 457 DLFITMGAGDN--WKLGRALYRHYAAQE 482


>gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 171

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVRIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYGTPPKG--VPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +++   L S  + +   G++N+ IG+PLT+  M  + +F   
Sbjct: 127 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLYL 168


>gi|229513465|ref|ZP_04402929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
 gi|229521606|ref|ZP_04411024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229341200|gb|EEO06204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229349342|gb|EEO14298.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
          Length = 451

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|332706478|ref|ZP_08426539.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
 gi|332354362|gb|EGJ33841.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
          Length = 515

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 141/399 (35%), Gaps = 48/399 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L  P+F   D+L AL +             IA+ G+ GKTTT  ++   L    
Sbjct: 129 YQAALKLGCPIFHRSDLLAALIEDYY---------SIAVAGTHGKTTTSSLIGYLLWQAG 179

Query: 135 K-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                 IG   + IG    L   P+     + E   S    ++         I V+T I 
Sbjct: 180 CDPTMIIGGEVDAIGGNARLGNGPL----LVAEADESDGSLVKLSAE-----IGVVTNIE 230

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H  ++  +EE+        +  +    +    D             L     YS  + 
Sbjct: 231 LDHPDHYQKLEEVVEIFQTFAKRCKN---LVGCIDCETVR------SQLKPNISYSLRRD 281

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             AD+ +      +  +   V    + +  +    +G H   N L  + +   L  + + 
Sbjct: 282 MGADYSVDDVTYEANGTTARVWEGNQVLGRLELKLLGKHNLSNALAAVAVARNLGLEFEA 341

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               ++ F   EG  +R+         + +D+ Y  +P+ ++A ++  ++I  + + R I
Sbjct: 342 IASGIASF---EGAKRRFELRGKCNDISFVDD-YAHHPSEIQATLAA-ARIQVNADQRII 396

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLALKDALPRSIH 423
           A+          +  F  + +   S  +   IS ++ +G           L  A+  +  
Sbjct: 397 AIF--QPHRYSRTLRFLPEFSVSFSNADLVVISDIYSAGEPDLGEISGENLYQAIASNHK 454

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            VHY  T++ +  F+   L  GD+ +   +      ++I
Sbjct: 455 DVHYQPTLESVVEFLNQILYPGDLALFLGAG--NLNQII 491


>gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Streptococcus gallolyticus UCN34]
 gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gallolyticus UCN34]
          Length = 483

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 139/424 (32%), Gaps = 56/424 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FFA KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSREADKSTLFFA-KGATFKK-EYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
           IP   V D+  A++   +       +   IIA TG+ GKTT        L    +   ++
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHRPAMFS 144

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFLTH---LVRPHI 186
            + +  +      +    P  +D           GM+HL        +L      +   +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQAYLVERVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+        E+    K  +      +  + +N    +F ++  +      
Sbjct: 205 GAFLNISPDHIGPIEHPTFEDYFYHKRLLMAN---SKAVVVNAGMDYFNIVAQQVANTPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIV 303
                +GK  +   +             +  + GK +       IG    +N +      
Sbjct: 262 D---FYGKGSDNTIE--------NGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLAC 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +    K ++        G+        G    +D  Y  N  S++  +SV+ + 
Sbjct: 311 LRLGTSLADIQKGIAQ---TSVPGRMEVITQTNGAKVFVD--YAHNGDSLEKLLSVVEE- 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
             H +G    +LG     G   +S   D A V++ +   HV L+          A+ + +
Sbjct: 365 --HQKGDLHLILGA---TGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQAIAEEI 419

Query: 419 PRSI 422
              +
Sbjct: 420 ASQV 423


>gi|315604422|ref|ZP_07879488.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315314128|gb|EFU62179.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 463

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 138/424 (32%), Gaps = 42/424 (9%)

Query: 47  KGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAAR 103
            G H D GHD     V   A +VV +     +      P   V    G L  ++    A 
Sbjct: 51  VGVHVDVGHD--ASHVDPEAVVVVSSAIREDN------PELAVARRRGQLVIHRSQALAL 102

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             S    +A+ G+ GKT+T  ML IAL +           +  + V   L ++      G
Sbjct: 103 AASGMRFVAVAGAHGKTSTSGMLAIALRACG--------LDPSVAVGGVLPQLGTGAHLG 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             E+ ++   E         P I ++T + P HL  +   EE      E    L   G +
Sbjct: 155 GGEVFVAEADESDGSFLNYSPAIEIVTNVEPDHLDRYHSREEFEEIFVEFVRRLVPGGLL 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQGK 279
               +D     L   + +LG + + ++G+ ++    AD  +      +E +   +    +
Sbjct: 215 VACAEDPGAARLADTAKSLGAR-VVTYGREEHSQCEADVLICDVSVDAEGASASLAWGPR 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +     G H   N             +               G  +R+      G  
Sbjct: 274 RARLRLAVPGEHHVLNAAAAWVAGIECGVEPQAMADG---LGTYAGAARRFESRGAVGGR 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L D+ Y  +P  ++AAI     ++    G    V      +   ++ F    A  LS  
Sbjct: 331 RLFDD-YAHHPTEVEAAIEQARVVAA--GGEVTVVF--QPHLYSRTRIFAERFASALSR- 384

Query: 400 NISHVWLSG-----FHVLALKDA---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              HV L+G            D+     R +   Y+E M             G V V   
Sbjct: 385 -ADHVVLAGIYGAREDPEPGVDSGMIASRVVGASYAEDMHEAARRAARLTPRGGVCVTMG 443

Query: 452 SNSC 455
           + S 
Sbjct: 444 AGSI 447


>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254766062|sp|C1CQG4|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA04375]
 gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41301]
 gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47368]
          Length = 450

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D +
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIATDKN 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMAAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|294784925|ref|ZP_06750213.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
 gi|294486639|gb|EFG34001.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
          Length = 432

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 49/353 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF   E
Sbjct: 90  KTKIIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIGRSLSE---VLLKEKDLDFISLE 146

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P+I++I  + P H+  ++  +E    K  I +   +      N
Sbjct: 147 LSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKFNITKNQTEDLYFIEN 202

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     ++ ++  +  K I S  K K AD  ++  K C  E S ++V           
Sbjct: 203 IDDV---EIEKRAKQIKAKRI-SVSKFKKADIFVKNDKICYGENSIIDVD--------KL 250

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +    IL  D +   + L +  P E    R     N G    I++S
Sbjct: 251 SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLE---HRTELFFNYGKVKFINDS 307

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI              I + G   +  +L+      LAE++   NI  V+
Sbjct: 308 KATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEVY 353

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
           L G     ++  L +   + Y +      + +++SL D          +V+++
Sbjct: 354 LIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFTKESNEVILL 403


>gi|330813736|ref|YP_004357975.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486831|gb|AEA81236.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 467

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 126/359 (35%), Gaps = 33/359 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I I+GS GKTT   +++  L             N  I   L       D D+ + E   S
Sbjct: 112 IVISGSHGKTTITSLVSTILKDANFK---PTIVNGGIINSLKTNARLGDGDWSVIEADES 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++F        IAV++ I   H+  +     + +  A   +     G   +  DD 
Sbjct: 169 DGSFLKFSN-----TIAVVSNIDHEHMDYYKSFSNLTNQFALFLDKTPLFGKNVVCLDDP 223

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HH 286
               L  KS     +   ++G S  ADF        + + + ++++  K    +     +
Sbjct: 224 SIAKLIKKSTK---QNFLTYGFSSKADFIPSNLVYKNMKIYFDLKVNLKKKFTIKNVTLN 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N    + +   L   V+   + L  F       +R    L +    +I + Y
Sbjct: 281 LMGQHNVLNATAAIIVSITLGISVEKIKRTLENFLGV----QRRLTKLYEKKNRIIFDDY 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--- 403
             +P  + A ++   +   + +  +I  +        + QS + + +      ++     
Sbjct: 337 AHHPTEIAAVLNACKK---NFKKHKIVSVFQPHRFSRV-QSLYSEFSNCFLDSDLVVLCP 392

Query: 404 VWLSGFHVLALK-DALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           V+ +G   +    +   + I       V  ++    L +F+Q +    +VV+   + + 
Sbjct: 393 VYAAGEKSINFDLEKFGKKIVKNSNTEVVIAKDEKNLEIFLQKNHSSKEVVIAMGAGNV 451


>gi|219685663|ref|ZP_03540477.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04]
 gi|219672779|gb|EED29804.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04]
          Length = 468

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 142/394 (36%), Gaps = 43/394 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-K 135
               L+IP+    +VLG L++             I I GS GKTTT   L I    +   
Sbjct: 92  EAKELNIPILSYPEVLGELSRKHY---------SIGIAGSHGKTTTTAFLGILFDKLGLN 142

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               +GS     G   T+A +    D  I E        + F      P++ ++T +   
Sbjct: 143 PNVIVGSSVKDFGDNSTIAGIS---DIFIVETCEYKKHFLHF-----SPNMLILTNVDYE 194

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+  F   E +  A  +    L+K G + +N DD     +K+K +   I  I+SFG    
Sbjct: 195 HVDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSKINREDI-NIFSFGSRDL 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-----V 310
           ++FQ+      +E              +    + +H   N    L  +++          
Sbjct: 254 SNFQISNIVVKNEYFCFSFL---GLHNIELRTVLFHNILNFSAALLALNLFLESNGKSIF 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D       V     G  +R      +     +D+ Y  +P  ++     L  I    + +
Sbjct: 311 DFEEVVKRVAKNYSGIKRRSEVIKEKKGIIYMDD-YAHHPREIR---DTLFGIKNFYKNK 366

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALPR 420
           RI +L  M      ++ F  D  EVL++ +I             +        L   + +
Sbjct: 367 RI-ILDFMPHTFTRTKEFFDDFVEVLNVADILILHNIYLSNRENFNPDELSFKLFLNIKK 425

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 426 INKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|327490074|gb|EGF21862.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1058]
          Length = 444

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 166/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG+  +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGSFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQISKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|157150961|ref|YP_001449831.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189082506|sp|A8AVM1|MURC_STRGC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157075755|gb|ABV10438.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 443

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 136/371 (36%), Gaps = 57/371 (15%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L+  LS+I  T   IG             R      + +FE     
Sbjct: 107 GVAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSAGAKYFVFE----- 152

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D  
Sbjct: 153 SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQ 210

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
              + +++       IY +G  K  DF      + +  S  +V  +G+ + E      G 
Sbjct: 211 LRRITSEA------PIYYYGFEKGNDFVAHDLLRSTTGSTFKVSYRGQELGEFHIPTFGR 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++ +   D++   + L  F   +   +R+   +  G  T+I + +  +P
Sbjct: 265 HNIMNATAVIGLLYVSGFDLNLVREHLKTFAGVK---RRFTEKVVNG--TVIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY- 399
             + A +    Q            PH   R IA+L       E + + +   A  L+   
Sbjct: 320 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALL------DEFADALNQADAVYLAQIY 373

Query: 400 -NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
            +   V      V  L + + + + V   + +  L         D  V V   +      
Sbjct: 374 GSAREVDHGDVKVEDLAEKIVKRVQVVSVDNVSPLLDH------DNAVYVFMGAGDIQTY 427

Query: 457 ---FYRLINLL 464
              F RL++ L
Sbjct: 428 EYSFERLLSNL 438


>gi|209525717|ref|ZP_03274254.1| UDP-N-acetylmuramate/alanine ligase [Arthrospira maxima CS-328]
 gi|209493886|gb|EDZ94204.1| UDP-N-acetylmuramate/alanine ligase [Arthrospira maxima CS-328]
          Length = 528

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 146/423 (34%), Gaps = 71/423 (16%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                   L  P+F   D+L AL               IA+ G+ GKTTT  ++   L  
Sbjct: 122 PEYQVARELGCPIFHRSDLLAALMAEY---------QSIAVAGTHGKTTTSSLIAFLLLK 172

Query: 133 IK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                   +G   N       +   P    + + E   S    ++  +     HI V+T 
Sbjct: 173 AGLDPTILVGGEVNAWEGNARVGHSP----YLVAEADESDGSLVKLAS-----HIGVVTN 223

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H  ++  ++++ S         E   TI    D +             +K   S+ 
Sbjct: 224 IELDHPDHYKTLDQLISTFRIFANQCE---TIVGCIDCTMVRDY--------LKPTISYS 272

Query: 252 KSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTA 308
            +   NAD+ +   +  ++    +V  +G+++ ++    +G H   N L T+ +  +L  
Sbjct: 273 INSQFNADYTVDAVQYLADGIMAQVYERGEAIGLLKLQLLGAHNLSNALATVAVGRLLNL 332

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS------- 361
           +     +A++ F    G  +R+    N G    +D+ Y  +P+ ++  ++          
Sbjct: 333 EFSVIAQAIAQF---PGTKRRFEYRGNYGGIQFVDD-YAHHPSEIRVTLAAARGRLQNSS 388

Query: 362 ---------QISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
                     I+P   G    R +A+          +++   D A      +   ++ ++
Sbjct: 389 GLSSTLSEAAITPVHPGSEIKRVVAIF--QPHRYSRTETLMEDFALCFGDADLVMLTEIY 446

Query: 406 LSGFH-------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +G                     HV Y  +++ +   +   L  GD+V+   +      
Sbjct: 447 SAGEANPGRISGQQLATRVAEHHPHVDYQSSLEAVKTRLCQLLKPGDLVLFLGAG--NLN 504

Query: 459 RLI 461
           R+I
Sbjct: 505 RVI 507


>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae JJA]
 gi|254766060|sp|C1CD51|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae JJA]
          Length = 450

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+      EE  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|254507374|ref|ZP_05119509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
 gi|219549630|gb|EED26620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
          Length = 453

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 145/410 (35%), Gaps = 33/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L +        +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEACGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +E I      +   +   G IF    D     +  +       
Sbjct: 180 TLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFAPKQDKALADVLERGCWSE-- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              +    +  D+Q  K    ++ S  +V  QG  + EV    +G H   N LM +    
Sbjct: 238 ---TESSGEQGDWQAEKV--VNDGSHFKVFFQGNQVGEVRWSLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A  AL  F   +   +R  C       T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPDLACDALGKFINTK---RRLECKGEIAGVTVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
             G  R +AVL        + +  H +     SL     V+L     +  +++D   +  
Sbjct: 347 KVGPRRILAVLE--PRSATMKRGVHKETL-AASLRAADSVFLYQPDSIDWSVEDVAQQCT 403

Query: 423 HVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
              + S+ +D L   I +    GD ++V  SN  GF     +L++ L  +
Sbjct: 404 QPAWTSKDVDALVEMIVAEAQTGDQILVM-SNG-GFEGIHGKLLDQLANK 451


>gi|153215192|ref|ZP_01949873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|153825779|ref|ZP_01978446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
 gi|124114837|gb|EAY33657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|149740502|gb|EDM54617.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
          Length = 451

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNSCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|167856476|ref|ZP_02479193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
 gi|167852399|gb|EDS23696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
          Length = 432

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 124/346 (35%), Gaps = 43/346 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITGS GK+T   + T             G+          L+ +  D +  
Sbjct: 102 REAKAPIIAITGSNGKSTVTTLTTEMAKQAGVKVGMGGNIGVP-----ALSLLKGDYELY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A I  I+  H+  +  IE+   AK +I+   E    +
Sbjct: 157 VLELSSFQL----ETTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHHAEN---V 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D   +    ++     K        K+A++     +  S      + +       
Sbjct: 210 IVNGEDP--QTFPEQAVGSLKKF-----AEKDAEYTACNGELYS-GDEAVIAIDE----- 256

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L ++ +      D    +KA        G   R++          I+
Sbjct: 257 -LKITGRHNVMNALASMSLAEATGVDRSGIVKA---LQSYSGLDHRFQLVPTNDGVRWIN 312

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L       EG    +LG     G+   +   +L   ++  N + 
Sbjct: 313 DSKATNVGSTVAALNGL-----QVEGTLYLLLG-----GDGKDADFSELKPFINQPN-TV 361

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L    P S+ V   ETM      I+  L  GD+V++
Sbjct: 362 CYCFGKDGAELAALTPNSVLV---ETMAQAVAQIRLRLKAGDMVLL 404


>gi|116747993|ref|YP_844680.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697057|gb|ABK16245.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 477

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           + G+ GK+TT  +L+  LS      +  +G++  +      + R P  V  G        
Sbjct: 115 VAGTHGKSTTSSLLSWVLSRGGLDPSVFVGAFIKNWNSSYRIGRGPFMVIEGDEYDTAFF 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               +FL +   P I ++T++   H   F+  E +  A       ++  G + LN DD+ 
Sbjct: 175 DKGPKFLHY--SPWIGIVTSVEFDHADIFTDFEAVRRAFRSFARLIQPDGHLILNADDAN 232

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIG 289
              L  +S       + ++G S+ AD+++        +     +  L   +  ++    G
Sbjct: 233 CLALAKESRG----RVTTYGWSRTADWRIVDMIHTDGRIRFTYENPLSRGTESILTRMPG 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N +  +   S+   D +     L  F   +    R +  L +    L+ + +  +
Sbjct: 289 RHNVSNSMAVMAAASLAGLDRNAVQDGLLTFEGVK----RRQDILGEIGGILVMDDFAHH 344

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P +++  I  L    P    RRI    +       + S    + +          +    
Sbjct: 345 PTAVRETIQALKDFYP---RRRIFCAFE-----PRTNSSRRSVFQQAYTTAFDDAFCICI 396

Query: 409 ---FHVLAL------------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                + A+             D   R    H   + + L  F+      GD+VV   SN
Sbjct: 397 KHPPGMDAIPREERLDVQKLVADIAERGKECHGFASAEDLIGFLVDHCASGDLVVCM-SN 455

Query: 454 SC 455
             
Sbjct: 456 GS 457


>gi|324991288|gb|EGC23221.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK353]
          Length = 444

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 161/490 (32%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDYEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGGFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|269956085|ref|YP_003325874.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304766|gb|ACZ30316.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 493

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 136/398 (34%), Gaps = 39/398 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLT 152
           L++    A L      +A+ G+ GKTTT  M+   L +     ++A  G+         T
Sbjct: 106 LHRSQALASLMLGQRAVAVAGAHGKTTTSAMIATVLRAAGVDASFAIGGTVRLRAADGTT 165

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            A            +  +   +  FL +   P IAV+T + P HL ++   E   +A   
Sbjct: 166 TAVPGGHRGTSDVLVAEADESDGSFLNYA--PTIAVVTNVEPDHLDHYGTREAFDAAFVA 223

Query: 213 IFEGLEKT-----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               L +      G +    DD     L A   A G  T  ++G S  AD  +      +
Sbjct: 224 FAGRLRRAADGSVGILVACADDDGAATLAAAHRAHGG-TAVTYGTSPGADVVVSDLHSGA 282

Query: 268 EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + +   V    L  + + +     G H   N    +   ++L         A++      
Sbjct: 283 DGASATVAGGPLGDRPLPLRLAVTGVHNLLNATAAVVTAALLGTPP---ADAVAGAAAFV 339

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G G+R+      G   ++D+ Y  +P  ++A    L    P     R+ VL     +   
Sbjct: 340 GTGRRFEPRGEAGGVRVVDD-YAHHPTEIEAL---LRAARPVAGTGRVLVLFQ-PHLYSR 394

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFH-----------VLALKDALP---RSIHVHYSETM 430
           ++ F    A  L+L     V ++G +              + D LP       VH  E  
Sbjct: 395 TRIFADRFAAALAL--ADEVVVTGVYRAREDVDPAVGARTITDLLPTTASGGGVHAVEDR 452

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 I      GD+V+   +       L   +LE  
Sbjct: 453 QEAARRIAELARPGDLVLTVGAGDV--TELAPEILEHL 488


>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
 gi|254766058|sp|B8ZMZ6|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
          Length = 450

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|251792021|ref|YP_003006741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533408|gb|ACS96654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 131/346 (37%), Gaps = 38/346 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+AITGS GK+T   ++     +   +    G+          L+ +    D  
Sbjct: 100 READKPIVAITGSNGKSTVTTLVAEMAKAGGLSVGMGGNIGIP-----ALSLLNQQHDLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H++ +  +++   AK +I++  +   T 
Sbjct: 155 VLELSSFQL----ETTYSLKAMAATVLNVTEDHMNRYVDLQDYRHAKLKIYDNCQ---TA 207

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D+       +          SF ++ NAD+ L   K     +++    +      
Sbjct: 208 VINGEDALTLPTTQRPQQQ-----VSFAEN-NADYWL---KTDGHHTYLMACNESILTID 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +      ++     AL  F    G   R++ A        I+
Sbjct: 259 EMKLSGRHNYMNALAAIALAQAAGVNLSGIQTALREFG---GLDHRFQLAHMADGVRWIN 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L       +G+   +LG   +  + S     +LA +++  +I  
Sbjct: 316 DSKATNVGSTVAALTGL-----QVKGKLHLLLGGDGKGADFS-----ELATLINQPHI-F 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L    P+S      +TM+     I+  L  GD+V++
Sbjct: 365 CYCFGQDGKQLAALSPQS---QLFDTMEQAIAAIRLQLQAGDMVLL 407


>gi|89067941|ref|ZP_01155385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046539|gb|EAR52595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
          Length = 464

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 109/349 (31%), Gaps = 39/349 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++A+TGS GK+TT  ++   L    +     G+    +         P D    + EL
Sbjct: 120 PKVVAVTGSNGKSTTAALIHHVLREGGRESQLAGNIGRGVLDIDP----PGDGGVVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                     L   + P +AV T ++P HL    G+    +AK  +F        I    
Sbjct: 176 SSYQ----TELARSLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRCIV-GV 230

Query: 228 DDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SM 281
           D+     L  + + +     +      +        W   + + ++    +G+      +
Sbjct: 231 DELEGRFLANQLAESRADDRVIRISADRKL---AEGWSVTARKGYLSELRKGRQVGSIDL 287

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +    G H  QN      +   L           + F    G   R +    +G    
Sbjct: 288 REIKGLPGAHNHQNACAAYAVARTLGLGPRQI---EAAFASYPGLPHRSQLIAERGGVRF 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-N 400
           +++S   N  S   A++   +I     G          E G         L  +L     
Sbjct: 345 VNDSKATNVDSAAKALAAFGRIRWICGGL-------QKEGG---------LGGLLDAAGG 388

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   ++ G    A   +L   I      TM        +    GDVV++
Sbjct: 389 VVKAYVIGREAEAFAMSL-TGIDAEVCTTMADAVARSAAEAEPGDVVLL 436


>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae R6]
 gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae D39]
 gi|30316022|sp|Q8DQM2|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122279017|sp|Q04LK1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae R6]
 gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae D39]
          Length = 450

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae TIGR4]
 gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
           TIGR4]
 gi|30316108|sp|Q97RU8|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae TIGR4]
          Length = 450

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 510

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 159/477 (33%), Gaps = 75/477 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ++ DSR ++    FF           ++  A++KGA   V        + +  I V 
Sbjct: 29  FENVTYDSRKVSDNTLFFCKGNFKP---SYLTSALEKGATAYVSEQKYAEGMDATGIIVT 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNN 145
            V   +  L         +++  IIA TG+ GKTT+       L+ +  K  A   + + 
Sbjct: 86  NVQKAMALLGAAF-YGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDKKVALFSTIDR 144

Query: 146 ------------HIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        +  P +L       A +   +   + E+        +   + +   +
Sbjct: 145 VLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK--KNRVYGLTFDV 202

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        ++    K ++   L  +    +N + ++   +   + A   
Sbjct: 203 GVFLNISPDHIGRNEHPTFDDYLHCKEQL---LVNSKCCVINGETAYLRDVYYTAKATTE 259

Query: 245 -KTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV----------QLQGKSMEVVHH 286
            + IY F         +   D + +   +   +S +EV           + GK       
Sbjct: 260 PEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGK---YELS 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N    +    +  A  + A K L   H       R      +   T+  + Y
Sbjct: 317 VPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHIPG----RMEIIKTKNNGTIYVD-Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS+KA  + L Q +    GR IAVLG     G+   S      + +S   + HV L
Sbjct: 372 AHNYASLKALFAFLKQQT--HAGRVIAVLGSP---GDKGISRRPGFGKAVSE-EVDHVIL 425

Query: 407 ----SGFH--VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                GF   +   ++        ++ V +    +           + D+VV+  K 
Sbjct: 426 TTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482


>gi|270159082|ref|ZP_06187738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|289166082|ref|YP_003456220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
 gi|269987421|gb|EEZ93676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|288859255|emb|CBJ13189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
          Length = 484

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 124/385 (32%), Gaps = 67/385 (17%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITG+ GK+T   ++     +     A  G+    +   L +       D  
Sbjct: 101 REIHAPVIAITGTNGKSTVTTLVGEMAKAAGYKVAVAGNIGTPV---LDMLNDEHQYDLW 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     LT+ + P  A I  + P HL     +E    AK  I+    K    
Sbjct: 158 VLELSSFQLD----LTYSLEPIAATILNVTPDHLDRHHTMEAYIQAKQRIYH---KARVA 210

Query: 224 FLNYDDSF----------------------------------FELLKAKSHALGIKTIYS 249
             N DD +                                   E  K + H  G     S
Sbjct: 211 LFNRDDFYTVPMTSSHDDAKISQELSTNKTSSILREPLSHACSEREKEEIHLRGNVNRIS 270

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVS 304
           FGK      +   W   ++++ +      K              G H   N L    +  
Sbjct: 271 FGKDAP---EKNNWGLINQENKI---YLAKGHTCFLPVESVLIKGVHNWFNALAACALAD 324

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I        I+ L+ F     R +  R          I++S   N   + A IS ++ I 
Sbjct: 325 IAGITQQHIIEVLTTFTGLPHRCQWVRTL---DGVDWINDSKGTN---IGATISAINGIG 378

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G+ + + G   + G   +     +A+ +       + L G     ++ AL   + +
Sbjct: 379 GSMQGKIVLIAGGQGK-GADFKELTQPIADFVRS-----IVLIGEDADKIEAALANVVPI 432

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
             + ++D      +     GDVV++
Sbjct: 433 SRASSLDNAVEVAKLQAKPGDVVLL 457


>gi|303242546|ref|ZP_07329024.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302589908|gb|EFL59678.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 464

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 125/355 (35%), Gaps = 49/355 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I A+TGS GKTTT  ++   L++        G+    +   +   +   + D  + E
Sbjct: 116 PAQIFAVTGSDGKTTTTTLIYNMLTAQGYNCWLGGNIGTPLLSKIDEIK---ETDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  + P++AV+T +AP HL     ++E   AK  IF    K+  + LN
Sbjct: 173 LSSFQLH-----TMTLSPNVAVVTNLAPNHLDMHKSMDEYIEAKKNIFLHQSKSDKVILN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D+                 +  F +    D   +          M V   GK +  + +
Sbjct: 228 FDNDITREFSKDVKG----NVVYFSRVNKIDSGAKM------DGEMLVYSDGKDIREIVN 277

Query: 287 -----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L  +    I   ++DT  +  + F   E    R            
Sbjct: 278 SGDIVIPGVHNIENYLAAIA-AVIDYVEIDTIKRVATTFKGVE---HRIELVRELDGIKF 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P+   A ++   Q       + I + G     G   +  +  + EVL    +
Sbjct: 334 YNDSIASSPSRTIAGLNSFKQ-------KVILIAG-----GYDKKIPYDVMGEVLVN-KV 380

Query: 402 SHVWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L G     ++ AL          + I+V    T+             GD++
Sbjct: 381 KCLVLVGQTAPKIEKALLDEVQRTGNGKDINVIKCSTLKEAVQKAYEFAKSGDII 435


>gi|315223120|ref|ZP_07864988.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus anginosus
           F0211]
 gi|315187809|gb|EFU21556.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus anginosus
           F0211]
          Length = 443

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 131/371 (35%), Gaps = 55/371 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML   LS+I  T   IG             R   +  +  FE    
Sbjct: 106 MGVAGAHGKTSTTGMLAHVLSNITDTSYLIGDG---------TGRGSANAKYFAFEA--- 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 154 --DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVSKG--LFVYGEDK 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               + A +       IY +G  +  DF      + +  S  +V   G+ + E      G
Sbjct: 210 ELRRVTANA------PIYYYGFKEGNDFIAHDLLRSTTGSSFKVSFHGEELGEFKIPSFG 263

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    +G++     D++   + L  F   +    R          T+ID+ +  +
Sbjct: 264 RHNIMNATAVIGLLYTAGFDLNLVREHLVTFGGVK----RRFTEKMVNGTTIIDD-FAHH 318

Query: 350 PASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SL 398
           P  + A +    Q            PH   R IA+L +  E    + + +  LA++  S 
Sbjct: 319 PTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVY--LAQIYGSA 376

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
             + H       V  L + + +   +   + +  L            V V   +      
Sbjct: 377 REVDH---GDVKVEDLAEKIIKKAEIITVDNVSPLLEH------PNAVYVFMGAGDIQTY 427

Query: 457 ---FYRLINLL 464
              F RL++ L
Sbjct: 428 EYSFERLLSNL 438


>gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sibiricum 255-15]
 gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium
           sibiricum 255-15]
          Length = 449

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 120/349 (34%), Gaps = 36/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   +KA  +AITGS GKTTT  ++   L    K     G+        + +A+     D
Sbjct: 104 AYRSTKADWVAITGSNGKTTTTTLVHELLKRGSKRVHLAGNIGFP---AVEVAQQAEAGD 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P  A    ++PAHL     +   A+AKA IF  +++ G
Sbjct: 161 VIVIELSSFQLMGIESFC----PVSAAFLNLSPAHLDYHGDVTSYAAAKARIFSNMDEAG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N DD     L   + A       +F + ++A   +        Q+ +   L  +  
Sbjct: 217 RLVVNADDEEVMRLSETAAAER----LTFSRRQDAYAHIENDMIFVGQTEI---LPVRE- 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  L ++      +      L  F        R           +
Sbjct: 269 ---LALGGGHNLENVLAALTLIEPFGISLTAIQDVLRTFGGVA---HRTEYIGEFAGRKV 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + +AA+S             I + G   E G              ++ ++
Sbjct: 323 YNDSKATNNVATEAALSGFQS-------PIIWICGG-LERGADLTPL------KSAMTHV 368

Query: 402 SHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            HV   G       D A  + I    +  M+            GD++++
Sbjct: 369 KHVIGLGETGQRFADLATEQQIASTVTREMEEAVATAFDVSKPGDIILL 417


>gi|332367387|gb|EGJ45120.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1059]
          Length = 444

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 161/490 (32%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGGFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
 gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
          Length = 811

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 157/437 (35%), Gaps = 59/437 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIP-----------VFGVDDVLGALNKLAVAARLR 105
           +   V KGA  +  + +         I               V   L  +++  + A L 
Sbjct: 42  VDQLVAKGAIFLPGHKENHVPEDCTIIYGSGISTDNVEYKEAVRKQLPMMHRAELLAFLM 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            + T I ++GS GKTT   ++T    + KK     IG  N      L+L     + ++ I
Sbjct: 102 QEHTSILVSGSHGKTTVTSLITAIFQTAKKDPSYAIGGLN-----SLSLNGYSGNSEYFI 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E   S  G +++      P IAV+T +   HLSNF    E++A    E    ++     
Sbjct: 157 AEADESD-GSLKY----YHPKIAVVTNLDNEHLSNFEGNKEKLALTIEEFARKVDNPNLC 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F N D    + LK +          S+G S++    +   +Q   +S   +    K  + 
Sbjct: 212 FYNGD---CQELKGRISGK------SYGFSQDCHLYIYSHRQDGWRSVFSLSFLEKDYQD 262

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + IG H   N  + +GI   L  D ++  +AL  F   + R +R     N     L 
Sbjct: 263 IDLNLIGKHNVANAAVAMGIALTLGIDEESIREALKNFPGVQRRMER----KNTSETFLF 318

Query: 343 DESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            E Y  +P+ +   +  L              PH   R    L D     + +       
Sbjct: 319 LEDYAHHPSEISCTLGGLRDAVGVRRVIAICQPHRFSRLQHCLEDFFNAFQDADE----- 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVK 450
             +  +Y+     L       L + +  S HV   Y    D +  +++  +   DV V  
Sbjct: 374 VILTDIYSAGETPLDLPSPEKLAETISLSSHVRCSYVP-YDNIIGYLKQIIRVHDVCV-- 430

Query: 451 SSNSCG-FYRLINLLLE 466
            S   G  Y + N L +
Sbjct: 431 -SLGAGNIYSVGNALKD 446


>gi|315636191|ref|ZP_07891445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arcobacter butzleri JV22]
 gi|315479552|gb|EFU70231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arcobacter butzleri JV22]
          Length = 300

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 116/321 (36%), Gaps = 30/321 (9%)

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           + +  K Y    S N   G+ L + + +P D    I E G    G+I  +T  + P I V
Sbjct: 1   MKNKYKVYKTPRSVNTIGGIVLDVNKDLPADTQIYIAEAGARVKGDIEEITMFLEPQICV 60

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I ++   H+  F  +E I + K EI +                             + I 
Sbjct: 61  IGSVGEQHIEYFKTLENIINTKMEILKSPNMKMGFV-----------HESVPISNSQNIT 109

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            F  S      L   K   +  W +V++ G         +G   A N+   + +   L  
Sbjct: 110 KFPNS------LHIVKSNLDGIWFDVEVGGNIEHFYAPILGSFNAINLTAVILVAHYLGM 163

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D+     AL+     E R ++           ++D+S+N N   M  A+++ S      E
Sbjct: 164 DILEIKAALTTLPQVEHRLQKIE----ANGKIIVDDSFNGNLEGMLEAVNICSS----YE 215

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           GR++ +   + E  + +      LA+ +   N  +V L+G     L  A      V+  +
Sbjct: 216 GRKVIITPGLVESTDEANIL---LAKAIDE-NFDYVILTGSLNTQLLKANINENKVYILK 271

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
               +   +      GD+++ 
Sbjct: 272 DKSKMQEVLAELTRTGDLILF 292


>gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226722947|sp|B1IAM3|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 450

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVIPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +           + GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELAIQGDVVLL 421


>gi|332359142|gb|EGJ36963.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK49]
          Length = 444

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 166/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG+  +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGSFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RQITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
 gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
          Length = 443

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 122/349 (34%), Gaps = 37/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +++ IIAITGS GKTTT  ++   +          G+                  ++ + 
Sbjct: 100 TESKIIAITGSNGKTTTTSLMYHIMKEAGLDVGLCGNIGKSFAQ----LVAEDPHEYYVI 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +IRF     +P+IA+I  I P HL    +  ++ A +K  I E         
Sbjct: 156 EISSFQLDDIRFF----KPYIAIILNITPDHLDRYENNFDKYAHSKFRITENQTDKEYFV 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD     L  +      KT  SF          +K K  + +   E++    S  + 
Sbjct: 212 YNVDDEKINELIKELKIKANKT--SFSMKD------KKQKAYANEKIFEIKDNDNSFLMP 263

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H   N L      +IL    D   ++LS F   E    R    L  G    
Sbjct: 264 IADLGLIGKHNVSNSLAAATAANILKIRKDVIKRSLSDFKSVE---HRLENVLKIGGIEF 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +   A+  +           I ++G     G    + + +L   +    +
Sbjct: 321 INDSKATNVNATYFALESMKN-------PVIWIVG-----GTDKGNDYSELMPFVKK-KV 367

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     + +A    +  +  ++TM             GD V++
Sbjct: 368 KAIVCLGVDNHKIIEAFSGVVEKITETKTMKDAVRAAYMYGEKGDTVLL 416


>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
 gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|226722948|sp|B2IN76|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
          Length = 450

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 129/351 (36%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|262370166|ref|ZP_06063493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
 gi|262315205|gb|EEY96245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
          Length = 448

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 130/348 (37%), Gaps = 28/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +         A  G+          L     + D 
Sbjct: 100 RRATDKPIMAITGSNAKSTVTTLIGLMAEHAGVKVAVGGNLGRP-----ALDLTKDEPDL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L      T  ++  +AV+  ++  HL     +    +AK  IF+G++K   
Sbjct: 155 YILELSSFQL----ETTSNLQAEVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGVKK--- 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N DDS    L   +  +      SFG +   D       +  + +    + + + + 
Sbjct: 208 VVHNRDDSLTRPLVPDATPMQ-----SFGLNA-PDMNQYGVLRDDDGTIWLARGRTRLLN 261

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                I G H   N L  L +   +   +++ ++ L  F   +G   R     +      
Sbjct: 262 SAEMYIQGTHNVANALACLALGEAINLPLESMLETLKSF---KGLEHRCEFVKDVEGVRY 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +  AAI  L        G+   +LG   +  + S +    L++ + +   
Sbjct: 319 YNDSKGTNVGATLAAIDGLGAAIEAKGGKVAIILGGQGKGQDFS-ALREALSKYVKVA-- 375

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L G     ++ A+  +  + ++ET++      Q+     DVV++
Sbjct: 376 ---VLIGEDAALIEQAVAGTTTLLHAETLEQAVALCQAHTQAHDVVLL 420


>gi|260775615|ref|ZP_05884512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608796|gb|EEX34961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 456

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 153/407 (37%), Gaps = 29/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGI 244
             V+  +   H   F  +E I      +   +   G I     D +  ++L+        
Sbjct: 180 TLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPQGDSAIADVLQ---RGCWS 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           +T +S    +  D++    KQ ++ S   V  QG+++  V    +G H   N LM +   
Sbjct: 237 ETEFS---GEQGDWRAE--KQVADGSIFTVFFQGEAVGTVKWDLVGDHNVDNALMAIAAA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    D A ++L+ F   +   +R          T+ D+ +  +P +++  +  L   
Sbjct: 292 RHVGVTPDLACQSLAKFINTK---RRLELKGEVNQITVYDD-FAHHPTAIELTVGGLR-- 345

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  G+ R +AVL        + +  H + LA  L+  ++  ++       +++D   +  
Sbjct: 346 NKVGKQRILAVLE--PRSATMKRGVHKETLAASLAQADVVFLYQPDNIEWSVEDIAQQCQ 403

Query: 423 HVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              Y+ +++D L   +      GD ++V  SN  GF  + + LL + 
Sbjct: 404 QSAYASDSVDALVQMVTEQAQPGDQILVM-SNG-GFEGIHDKLLAKL 448


>gi|118586734|ref|ZP_01544171.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
 gi|118432822|gb|EAV39551.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
          Length = 435

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 143/424 (33%), Gaps = 49/424 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           DF    ++    +V        +       V     V   L     A     +    IA+
Sbjct: 52  DFDPDLIKSNYVVV-----KGNAFSDDHPQVLAAKKVGAKLLTYPQAVEEVIRRHFSIAV 106

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +G+ GKT+T  +L   LS+ + T   IG           + +      + + E       
Sbjct: 107 SGAHGKTSTTSLLAHILSNFESTSYLIGDG---------VGKGVFSSKYFVVEA-----D 152

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E         P +A+IT I   H   +  ++++ SA +E  + ++K   IF   +D   +
Sbjct: 153 EYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGEDPEIK 210

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292
            +K K+       I S+G  K+  F      + +E S+  +   G+ +      I G H 
Sbjct: 211 KIKPKTA-----RILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATIEGDHG 265

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             +    + +   L   VD   K L  +   + R    + A        I + Y  +P  
Sbjct: 266 ILDTTAAIAVADYLGFSVDQIQKGLLTYQGAKRRFNISQVAD-----LTIVDDYAHHPTE 320

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +KA I    Q       R +AV            +F  +  + L   +   V+++     
Sbjct: 321 IKATIDAARQ--KFPNKRLVAVF--QPHTYTRVNAFKDEYVDALK--SADKVYIT-PIFG 373

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDVVVVKSSNSCGFYRLINLLL 465
           +L++    +      + +      I         S   G V+V   +      +  + L 
Sbjct: 374 SLREKAGNAKSEDILDKLPNAGAIISESNAYDKLSAEHGSVLVFMGAGDI--EKYEDALK 431

Query: 466 EEFP 469
           + F 
Sbjct: 432 KGFE 435


>gi|322834422|ref|YP_004214449.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
 gi|321169623|gb|ADW75322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
          Length = 438

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 135/347 (38%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  I+AITGS GK+T   ++     +        G+    +     L  +  + D  
Sbjct: 101 RETQTPIVAITGSNGKSTVTTLVGEMAKAAGWRVGVGGNIGLPV-----LTMLDHEYDLF 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +    A I  +   H+  +  G+++  +AK +++E       
Sbjct: 156 VLELSSFQL----ETTHSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLKVYEN---AAL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        K   SFG     D+ L + +   +  W+ V+ +     
Sbjct: 209 CVVNADDALTMPVRG-----ADKRCVSFGVDVG-DYHLTRQQ---DDIWLRVRGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     +++KAL+ F    G   R++ A        I
Sbjct: 260 REMPLTGRHNYTNALAALALADAVGIPHASSLKALTTFT---GLAHRFQVAWQHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H EG    +LG   +  + S      L   L   N+ 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HVEGTLHLLLGGDGKSADFSP-----LTRYLQGDNL- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L D  P    +   ETM+     I + +V GD+V++
Sbjct: 366 RIYCFGRDGAELADLRPDVSSL--FETMEQAMRDISTRVVSGDMVLL 410


>gi|322386970|ref|ZP_08060594.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus cristatus
           ATCC 51100]
 gi|321269252|gb|EFX52188.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus cristatus
           ATCC 51100]
          Length = 444

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 136/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE    
Sbjct: 106 LGVAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDE 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               + + +       IY +G K +  DF      + +  S  +V  +G+ + E      
Sbjct: 210 QLRRITSNA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++ I   D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYIAGIDLNLVREHLKTFSGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +P  + A +    Q            PH   R IA+L +  E    + S +     +  +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQI 373

Query: 399 YN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
           Y     V      V  L + + +   V   + +  L         D  V V   +     
Sbjct: 374 YGSAREVDKGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|325847851|ref|ZP_08170073.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480869|gb|EGC83922.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 436

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 130/369 (35%), Gaps = 39/369 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ + ++ RL     II++TG+ GKTTT  ++T  L+   K    +G+    I     L 
Sbjct: 83  ISDIELSYRLFEDKKIISVTGTNGKTTTTSLITYVLNQAGKNAISVGNIGEGI-----LW 137

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +M       + E+    L      T   +PHI  I  I+P H+      E  A+ K ++ 
Sbjct: 138 QMYNKDAVFVEEVSSFQLHN----TKTFKPHIGAILNISPDHIDWHGSFENYANDKLKLA 193

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWM 272
           +  +K   + +N+DD      K K  A     IY F   +  +    L+      +    
Sbjct: 194 KNQDKDDFLVINHDDKILSKNKNKFKA----KIYEFSMKEKVERGIYLKDDSLYLKDEKD 249

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L  K        +G H   N    +  + +   D++  IK    F   E    R   
Sbjct: 250 IFLLNKKD----LKIVGNHNLANAACAMLCLYLYGIDLEKVIKYTKTFKAIE---HRLEF 302

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                     ++S   N  S   AI    +         I + G   +  + S  F  + 
Sbjct: 303 VKKVKNVPFYNDSKATNVDSTIKAIDSFDK-------NIILLAGGYDKKIDYSPMFEKEN 355

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVK 450
            +      I  + L G     + + L +   V Y   + M          + D D V++ 
Sbjct: 356 GK------IKAMILLG-QTKYILENLCKKYKVKYFLVDNMQMAVDKSFEIMEDSDTVLLS 408

Query: 451 -SSNSCGFY 458
            +S S G Y
Sbjct: 409 PASASWGMY 417


>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 434

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 90  AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 146

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 147 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 203 FLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 255

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 256 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 308

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 309 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 355

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 356 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 405


>gi|56696080|ref|YP_166434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ruegeria
           pomeroyi DSS-3]
 gi|62900661|sp|Q5LU71|MURD_SILPO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56677817|gb|AAV94483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria pomeroyi
           DSS-3]
          Length = 466

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 119/373 (31%), Gaps = 40/373 (10%)

Query: 86  FGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD+ +G   +           +   ++A+TGS GK+TT  ++   LS   +     G+
Sbjct: 95  VPVDNDIGLFFRSFAGPEWDGFDTLPRVVAVTGSNGKSTTSALIHHILSEAGRPVQLAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +           +    + EL        R LT    P +AV T ++P HL    G
Sbjct: 155 IGRGVLDI----EPGEEGSVVVLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHGG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
           +    +AK  +F          +  D+S    L  + S   G   +     S+       
Sbjct: 207 MGGYFAAKRRLFAEGGPD-RAVIGVDESEGLYLAGQMSEGPGDDRVIRVSVSRK--LTGP 263

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W+  + + ++    +G+      +  +    G H  QN          L          
Sbjct: 264 GWQVFARKGYLSEYRKGRQAGSIDLRDIRGLPGAHNHQNACAAYAACRALGLSPKAI--- 320

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +      G   R +     G  T +++S   N  +   A+    +I     G       
Sbjct: 321 EAGMRSYPGLPHRSQIVAEAGGVTYVNDSKATNVDAALKALGAFKRIRWICGGL------ 374

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
              E G    + +  LAEVL  Y I           A   AL   +      TMD     
Sbjct: 375 -QKEGGI--AALNGGLAEVLKAYVIGR--------EAAGFALQLEVESEVCTTMDEAVAR 423

Query: 437 IQSSLVDGDVVVV 449
             +    GD V++
Sbjct: 424 AMAEAEPGDTVLL 436


>gi|317489847|ref|ZP_07948342.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA]
 gi|316911052|gb|EFV32666.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA]
          Length = 173

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N      +       +     AL+   P+ GR +  R    +G FT+++++YNANP SM
Sbjct: 2   SNACAAAAVGRACGIPLSVCADALAHAEPEAGRQEVLRA---RGGFTVVNDAYNANPDSM 58

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +A+++    +     G+ +AVLGDM E+G  + + H  + E  +   +  +   G   L 
Sbjct: 59  RASLATFCALD--VPGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCVGELSLH 116

Query: 414 LKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + DA  R+      +  + ++  +F  + + +  GD V+VK+S+  G  R++  L+ 
Sbjct: 117 IADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHFMGLTRVVEGLVN 173


>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
 gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
          Length = 446

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 120/374 (32%), Gaps = 48/374 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   + ITG+ GK+T   ++   L +        G+    +   +  A+   D D+ + E
Sbjct: 104 RPPAVMITGTNGKSTVTSLIAAMLEAEGLRAFAGGNLGTPLCAYVAGAQ---DDDWAVLE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +              +RP + VI  I   HL  +   E+ A +K  +     +     L 
Sbjct: 161 VSSFQTD----TAVSLRPKVGVILNITDDHLDRYDSFEQYAQSKFRLLANQAEGDVAVLC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----E 282
            DD       A    L   +++ +G + +      +     E   + ++L G+ +     
Sbjct: 217 ADDPEV----AARLGLAPASVWLYGAAND-----HRPGGRLENQRLALELPGRRLIKLDA 267

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G     N+L      +          +A+  F P    G R      +      
Sbjct: 268 SRSRLWGGFNKLNILAAGLAAAACGVSAQAMQRAIDEFQPL---GHRLALVAERDGVAWY 324

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +++AA+  L++ +       + +LG   + G  +      LA    L    
Sbjct: 325 DDSKGTNVGAVQAALEALARPA-------VLLLGGRDKDGRFAL-LAPQLAAWARL---- 372

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------- 452
            V   G    ++   +           +             GDVV++    +S       
Sbjct: 373 -VICFGEAGASIAGQIEGLAERQVVADLPAAVTLAAQEAKPGDVVLLSPGCASFDAYAGY 431

Query: 453 --NSCGFYRLINLL 464
                 F RL+  L
Sbjct: 432 AMRGDHFRRLVAEL 445


>gi|325294673|ref|YP_004281187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065121|gb|ADY73128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 412

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 129/385 (33%), Gaps = 55/385 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A R   K  II+ITG+ GK+TT  ++   L          G++        + A
Sbjct: 68  IGEIELAYRY-FKGKIISITGTNGKSTTTALIYQVLKEAGYKTFIGGNFGIPFS---SFA 123

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D    + EL    + +++      R  I++I  I P H++ +   EE   AK ++ 
Sbjct: 124 EETTDDSITVLELSSFQIEDLKDF----RSSISIILNITPDHMNRYKSFEEYVKAKLKL- 178

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L  +    LN DD     L         +  + F + + AD    K K   +   +EV
Sbjct: 179 --LGHSEFCILNQDDPVLRNL-------NRENFFFFSRKRKADAFFEKGKIFCKDFKIEV 229

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +L            G H  +N +  L  +  L    +  +     F    G   R     
Sbjct: 230 EL--------LPLKGIHNVENYMGALLALKKLKLSNEKILNGFKTF---YGLPHRTELVA 278

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S + N  S+K A+     I        I + G   +  + S         
Sbjct: 279 EINGIKFINDSKSTNVDSLKKALESYEDI--------ILIAGGSDKGLDFSS------LR 324

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
            L    +  +   G      K      + V  S+ +             GDVV++    +
Sbjct: 325 KLVRERVKGIVAIGETAEQFKKTFSDIVDVRISDNIFQAVKTAYKLASSGDVVLLSPGCA 384

Query: 452 S---------NSCGFYRLINLLLEE 467
           S             F   + LL E+
Sbjct: 385 SFDMFKNFEDRGEKFREAVKLLEEK 409


>gi|323350999|ref|ZP_08086656.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           VMC66]
 gi|322122723|gb|EFX94432.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           VMC66]
          Length = 444

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 165/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG   +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGGFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDKGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 438

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+    +   LTL + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAQAAGWQVGVGGNIGLPV---LTLLQQPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTRSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAT---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG    AD       +    +W+ VQ +     
Sbjct: 209 CVVNADDAMTIPVRGADA-----RCLSFG----ADVGDYHLTRQQGSTWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     +++ AL+ F   +G   R++          I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRASSLTALTTF---KGLAHRFQLVHEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    I 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HPAGILWLLLGGDGKSADFSP-----LTRYLQGDRI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L  AL   I V  +ETM      I + +  GD+V++
Sbjct: 366 RIYCFGRDGAELA-ALRPEIAVQ-TETMAAAVRQIATRVQPGDLVLL 410


>gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
 gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
          Length = 505

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 150/448 (33%), Gaps = 57/448 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DS+ ++    F   KG  +    ++  A++KGA   V           ++IP  
Sbjct: 26  VSNIAYDSKKVSNGTLFVC-KGAAFKK-QYLEEAIEKGACCYVSEDCY-----DVNIPQI 78

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIA-----LSSIKKTYAC 139
            V D+  A+             K T+I ITG+ GKTTT   +        L+S KK    
Sbjct: 79  RVGDIRKAMAVIAGRFYDHPDRKLTLIGITGTKGKTTTAYYIKAILDTFLLNSGKKPAGI 138

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPH 185
           +    N+ G     + +     F +FE              + +S        T+ +   
Sbjct: 139 LSGIFNYYGKDYEESSLTTPETFELFEKLSNAAENGLEYLVMEVSSQALKYHRTYGLMFD 198

Query: 186 IAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            A    +   H+     S  E+  ++K  +F   +      LN D   +E    +   + 
Sbjct: 199 FAGYLNLDEDHISPGEHSDFEDYKASKLLLF---KACDVAVLNKDSEHYEDFLNEC--VD 253

Query: 244 IKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---------VVHHGIGYHMA 293
            K + SF  K  +AD++       +      +     S +               G    
Sbjct: 254 AKKVISFSSKGLDADYRACDINAKNGVLEFNIVYHDASRDTDEPVRKSNFTILSSGEFNI 313

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L+   I S L    +   +A    +  +  G+        G   ++D ++N      
Sbjct: 314 DNALLATSIGSELNVPYEDMKEA---LYNVKVPGRMEVVKSRGGRIAIVDFAHNK----- 365

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-L 412
            + I +   +      ++IA++      G  +      +  +++  N   V+++      
Sbjct: 366 LSFIKLFEAVKKEYPDKKIAIV--FGTPGGKAYDRRALMG-MIAAKNADKVYITEDDPYR 422

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSS 440
              + +   I     +  D + + +   
Sbjct: 423 EKAEDICEEIRAEAVKYSDDIVVVLNRQ 450


>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 462

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 125/349 (35%), Gaps = 37/349 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++ +TGS GKTTT  +L   L++   + A  G+  N +G        P  V   + EL 
Sbjct: 109 PVVGVTGSNGKTTTTSILGHVLNAAGVSTAVAGNIGNPLGSVPLSGETPSLV---VAELS 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L               V+T +AP H+      E    AK  + E     G   +   
Sbjct: 166 SFQL----HWCEEASFAGGVVTNLAPDHIDWHGSYENYVLAKRRLIERTGPDGFAVVQLA 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-----V 283
           D   ++L+      G   +Y     K     + +     + + + + L   S+       
Sbjct: 222 D--LDILRG---GSGSVRLYPLSWDK-----VEQGVHLDDAAQVALLLMNGSVRELFRFD 271

Query: 284 VHHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               +G H  +N  M L   + +L   ++     +  F        R       G  T +
Sbjct: 272 QVRLLGRHNLENAAMALCAANLVLNRPLNGEDGRIGEFMAPP---HRCELVGRYGGVTFV 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N   + A ++ L  +     G ++ +LG     G      +  LA+ +S    S
Sbjct: 329 DDSKGTN---VAATVTALRSLKCDPGGTKVILLG-----GRGKGEDYQVLAQTVSE-ECS 379

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  L G     + +AL ++    +S   ++D           +GD++++
Sbjct: 380 YAVLYGEEGDRIAEALSKAGFNRWSRVGSLDEAVRVAFQRTKEGDMILL 428


>gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 481

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 145/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       + +G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISQEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLVD-GDVVVV--KSS 452
             V      +       S   +  D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQEAKDAVIIAGKGA 457


>gi|52841980|ref|YP_095779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629091|gb|AAU27832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 455

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 128/357 (35%), Gaps = 25/357 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IA+ G+ GKTTT  M+   L          IG  ++       L +      + +
Sbjct: 103 SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKG----RWFV 158

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP+IAV+  +   H   +  +  I      +   + K+G 
Sbjct: 159 IEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
                DD     + ++        I +   S  A++           S  ++   G  + 
Sbjct: 219 AIKPRDDKALNEVLSRGQ---FSRIETLALSGEAEWVAELIDDS--GSQFKILHNGGVVA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG    +N L  +        + + A KAL  F P +   +R     N+   T+
Sbjct: 274 EVSWPLIGQFNVENGLAAIAATWNAGVNPEVAAKALEQFSPVK---RRLEVRSNRHGITV 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   I  L +   H   R  AV+    E    +    +  AE+  +L  
Sbjct: 331 YDD-FAHHPTAITKTIDALKRSGRHQ--RIFAVM----EFASYTMRTGVHAAEMAHALAP 383

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   ++       LKD +   +      +    +   I  ++ +GD V+V S+    
Sbjct: 384 VDGAYVLEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGDAVLVMSNRGFN 440


>gi|171778709|ref|ZP_02919805.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282666|gb|EDT48090.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 451

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 128/350 (36%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A + S A II ITGS GKTTT  M+   L++  K+    G+          +A+   D D
Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFP---ASEVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PH+AVIT + P H+    G EE  +AK  I + +    
Sbjct: 163 TLVMELSSFQLMG----TDTFHPHMAVITNLMPTHIDYHGGFEEYVAAKWNIQKNMTAED 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K+ A     +  F  ++  D          +   +  + +    
Sbjct: 219 YLVLNFNQDLAKELAQKTAA----QVIPFSTTEKVD------GAYLDGDTLYFKDEAIMK 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ I  +     +   + LS F   +    R +          
Sbjct: 269 ASEIGVPGNHNVENALATIAIAKLSGIANEAIKETLSHFGGVK---HRLQALGEVNGIKF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  + + A+S           + I + G   + G        D+        +
Sbjct: 326 YNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------TGV 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             + + G     +K A  ++  V Y +   +        S    GDVV++
Sbjct: 373 KLMVILGESAPRVKRAADKA-QVPYVDAKDVADAARIAYSKAEAGDVVLL 421


>gi|331701059|ref|YP_004398018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128402|gb|AEB72955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 459

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 32/346 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A II +TGS GKTTT  M+T  L+  +       + N  I    T  +   D D  + 
Sbjct: 110 TDAEIIGVTGSNGKTTTVTMITEILNQERAKGHAYAAGNIGISATETAKKATAD-DTIVM 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I+ L     PH+AV+T I   HL      E   +AK  I           +
Sbjct: 169 ELSSFMLLGIKTL----HPHVAVLTNIFSNHLDYHKTRENYVNAKMRITMNQTPEDFFVV 224

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N+D   +  L  +S A  +    +    K A    +  K        E  +  + ++   
Sbjct: 225 NFDSDEWRGLSKRSAAKVVPFARTTEIDKGA--YEKNGKLYYND---EFIMNAEDIK--- 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N L  +    +L           +V     G   R +  L        ++S
Sbjct: 277 -VPGKQNVENALAAIACAKVLGKSNLAI---TNVLETFTGVRHRLQFVLEANGRKFYNDS 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              +  + + A+            + + +L    + G           E +         
Sbjct: 333 KATDIEATQMALEGFD--------KPVVLLAGGLDRGYTFDKLIPQFKEHVKAA-----V 379

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     L+D+L ++   ++   + +D       S   +GD+V++
Sbjct: 380 LFGETADLLEDSLKKAGIQNIQKVDNIDEAVPAAYSFSDEGDIVLL 425


>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 143/400 (35%), Gaps = 42/400 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I   V     LVVV+  +  S     I V      +  + ++ +A R      I+AITG+
Sbjct: 62  IPDEVIDKVQLVVVSPGVPLS---KRIVVLAHKKGVEVIGEIELAYRFCKSKNIVAITGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L    K     G+        +       +    + E+    L  I+
Sbjct: 119 NGKTTTTTLVGEILKKQHKDVVVCGNIGLPF---IDTVETSSENTIFVLEISSFQLETIK 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+    +E    AK  IFE +++TG   LNYD+S    L 
Sbjct: 176 YF----KPMVGCILNITPDHLNRHMTMENYIKAKMRIFENIDETGYTVLNYDNSVTRDLI 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHM 292
             +       +  F K+KN   Q +      E++ +    +GK+ EV+        G H 
Sbjct: 232 GLAKG----NVIVFSKNKN---QFKNV-VFIEENKIYFTFEGKTQEVMRKDEIFIPGEHN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  +          DT    L  F   E    R             ++S   N  +
Sbjct: 284 LENALAAIACTLPFGVTKDTIEYVLKNFKGVE---HRIEFVTEINGIKFYNDSKGTNTDA 340

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + AIS             I + G      +  +SF      +     +  V+L G    
Sbjct: 341 AEKAISAFES-------PIILIAGG----YDKGESFERFAGLIAKK--VKKVFLLGQTKQ 387

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVV 449
            +   L + I     E +  L   ++ S      GDVV++
Sbjct: 388 KIASELEK-IGYRNFELVSNLKEAVEKSFEYAKSGDVVLL 426


>gi|219684934|ref|ZP_03539875.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr]
 gi|219671672|gb|EED28728.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr]
          Length = 468

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 142/394 (36%), Gaps = 43/394 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-K 135
               L+IP+    +VLG L++             I I GS GKTTT   L I    +   
Sbjct: 92  EAKELNIPILSYPEVLGELSRKHY---------SIGIAGSHGKTTTTAFLGILFDKLGLN 142

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               +GS     G   T+A +    D  I E        + F      P++ ++T +   
Sbjct: 143 PNVIVGSSVKDFGDNSTIAGIS---DIFIVETCEYKKHFLHF-----SPNMLILTNVDYE 194

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+  F   E +  A  +    L+K G + +N DD     +K++ +   I  I+SFG    
Sbjct: 195 HVDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSQINREDI-NIFSFGSRDL 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-----V 310
           ++FQ+      +E              +    + +H   N    L  +++          
Sbjct: 254 SNFQISNIVVKNEYFCFSFL---GLHNIELRTVLFHNILNFSAALLALNLFLESNGKSIF 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D       V     G  +R      +     +D+ Y  +P  ++     L  I    + +
Sbjct: 311 DFEEVVKRVAKNYSGIKRRSEVIKEKKGIIYMDD-YAHHPREIR---DTLFGIKNFYKNK 366

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALPR 420
           RI +L  M      ++ F  D  EVL++ +I             +        L   + +
Sbjct: 367 RI-ILDFMPHTFTRTKEFFDDFVEVLNVADILILHNIYLSNRENFNPDELSFKLFLNIKK 425

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 426 INKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|254496588|ref|ZP_05109456.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
 gi|254354212|gb|EET12879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
          Length = 454

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 135/356 (37%), Gaps = 23/356 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IAI+G+ GKTTT  M++  L          IG  ++      T AR+     + +
Sbjct: 101 SKYQVIAISGTHGKTTTTSMVSWILDQAGLNPGFLIGGVSSDFK---TSARLGGG-KWFV 156

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP IA++  +   H   +  +E I      +   +  +G 
Sbjct: 157 IEADEYDSAFFDKRPKFMHYRPRIAILNNLEFDHADIYPNLEAIQMQFHYLLRTIPASGV 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                DD     + A+     I+ I     + +A + +   +     S  +V   G+ + 
Sbjct: 217 AIKPRDDKALNEVIARGQYSRIEEI---ALAGDAQWSVTFIE--DNGSAFKVLHYGEEIA 271

Query: 283 VVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            VH   IG    +N L  +            A +AL  F P +   +R     N+   T+
Sbjct: 272 EVHWSLIGRFNVENGLAAIAASVNAGVSPKVAAEALERFTPVK---RRLEVKSNKHGITV 328

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+ +  +P ++   I  L     +   R  AVL +       +     ++AE L+   +
Sbjct: 329 YDD-FAHHPTAITRTIDALK--RSNRHRRIFAVL-EFASYTMRTGIHAAEMAEALA--PV 382

Query: 402 SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +  ++   +   LK+ +   +      +  D +   + S + DGD V+V S+    
Sbjct: 383 NGAYILEPNDFNLKETVNNWTCPYQICKDTDEIANEVASQVQDGDAVLVMSNRGFN 438


>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17570]
          Length = 450

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+ +F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLTSKTEA----TVVAFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|95930733|ref|ZP_01313466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133213|gb|EAT14879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 448

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 138/399 (34%), Gaps = 43/399 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATI 110
           GHD    AV + A L+VV+  +      L++PV    +D  +    ++  A+R    A +
Sbjct: 59  GHD---DAVFQQADLIVVSPGVP-----LTVPVLAKAIDRGIPVWGEVEYASR-HLTAPV 109

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT E++   L    K     G+    +           DVD+ + EL   
Sbjct: 110 IAITGTNGKSTTTELVGQMLRGCGKRVFVGGNIGVPLIEAA-----GQDVDYVVVELSSF 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L  I  L     P  A++  ++  HL  +  +    +AK  IF          LN +D 
Sbjct: 165 QLETIDQL----HPRYALMLNVSVDHLDRYPDMAAYVAAKKAIFANQTADDIAVLNGEDE 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +     +  ++        +   F       C++                    G 
Sbjct: 221 LVMAMVPGIDSRPVRFSSQRLLEQGISFTQGTIHWCNKGEQCCFNTDE------LMLSGL 274

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N++  L  V +   D + A +A   F    G   R             ++S   N 
Sbjct: 275 HNIENVMAALVPVLLEGCDPEQAWQAACRFT---GLPHRMVLVRTLNGVRWYNDSKGTNL 331

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S++ ++  LS       G            G+     + D+        ++ + L G  
Sbjct: 332 GSVEKSVGGLSAPVTLIAG------------GKDKGGDYRDI-RSALQGRVTALVLIGQA 378

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLV-DGDVVV 448
              ++ A      ++ +E+M+             G VV+
Sbjct: 379 ADLMEQAWGDLCPIYRAESMEQAVDVAHKVTPSPGQVVL 417


>gi|119492219|ref|ZP_01623629.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119453276|gb|EAW34442.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 525

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 152/407 (37%), Gaps = 53/407 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA-LS 131
               +  +L  P+F   D+L AL               IA+ G+ GKTTT  ++    L 
Sbjct: 128 PEYKAAQALGCPIFHRSDILAALIGEY---------QSIAVAGTHGKTTTSSLIAYMMLE 178

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +       +G   N       + + P    + + E   S    ++F      P I +IT 
Sbjct: 179 AGLDPTILVGGEVNAWEGNARVGQSP----YLVAEADESDGSLVKF-----SPAIGIITN 229

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H  ++  ++++ S      E  +   T+    D +             I+   S+ 
Sbjct: 230 IELDHPDHYQTLDQVISTFETFTEHCQ---TLIGCIDCATVRE--------RIQPQISYS 278

Query: 252 KSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTA 308
              N  AD+ +   +  S+ S  +V  +G+ +  +H   +G H  QN L  + +  ++  
Sbjct: 279 LDPNSGADYTVDAVEYGSDGSLAQVSERGQLLGQLHVKLLGQHNLQNTLAAVAVGRLVGL 338

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-----QI 363
           +     +A+S F   EG  +R+    +      ID+ Y  +P+ ++A +           
Sbjct: 339 EFSAIAEAISTF---EGAKRRFEHRGSSNDILFIDD-YAHHPSEIRATLGAARLRKGSHT 394

Query: 364 SPHGEGRRIAVLGDMCE-------MGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALK 415
           + +   +R+  +            + E SQ F   DL  +  +Y+         +   L 
Sbjct: 395 ATNIPVQRVVAIFQPHRYSRTQTFLSEFSQCFADADLVVLTDIYSAGEANTGQINGQQLA 454

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           D++      V+Y ++++ +   +   L  GD+ +   +      ++I
Sbjct: 455 DSIGTYHPQVYYRQSLESVKTLLSEILKPGDLALFLGAG--NLNKII 499


>gi|313905181|ref|ZP_07838549.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
 gi|313469934|gb|EFR65268.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
          Length = 452

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 118/351 (33%), Gaps = 40/351 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++A+TG+ GKTTT  +L   +         +G+          + +   +  + + E
Sbjct: 106 KGKVLAVTGTNGKTTTVTLLGEIMKDYYPEVYVVGNIGTPYTD--VVLQQTENA-WTVAE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    +  I        P  + +T I   HL+    +EE    KA + E         LN
Sbjct: 163 VSSFQMETIEEF----HPVASALTNITEDHLNRHHTMEEYIRCKARVTENQTAEDCCVLN 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
           Y+D        K +A     +  F        ++ +     E   + ++  G+ ++VV  
Sbjct: 219 YEDEVLRPFAEKVNA----KVIFFSSR-----RVLEKGIYLEGDTIRLKDGGEVIDVVKT 269

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N+++ + +       +D+  + +  F   E    R      +      
Sbjct: 270 GDLQLLGLHNFENVMVAVAMAYFAGVPMDSIRRTICAFRGVE---HRIEFVEEKKGVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +    I  +         R   ++G     G   +    D         + 
Sbjct: 327 NDSKGTNPDAAIKGIQAMD--------RPTCLIG-----GGFDKQLPFDDWINAFDGKVK 373

Query: 403 HVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L G     +     R       + + + ++       S  V+GD V++
Sbjct: 374 FFALIGQTAQTIAGTAERLGFPKEKIAFCDNLEEAVKACASHAVEGDAVLL 424


>gi|237743960|ref|ZP_04574441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
 gi|229432991|gb|EEO43203.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
          Length = 454

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 136/353 (38%), Gaps = 49/353 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF   E
Sbjct: 112 KTKIIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIGRSLSE---VLLKEKDLDFISLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P+I++I  + P H+  +   +E    K  I +   +      N
Sbjct: 169 LSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIEN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     ++ ++  +  K I S  K K AD  +   K C  + S ++V           
Sbjct: 225 IDDV---EIEKRAKQVKAKRI-SVSKFKKADIFVENDKICHGKDSIIDVD--------KL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +    IL  D +   + L +  P E    R     N G    I++S
Sbjct: 273 SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLE---HRTELFFNYGKLKFINDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI              I + G   +  +L+      LAE++   NI  V+
Sbjct: 330 KATNVDSTKFAIEA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEVY 375

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
           L G     ++  L +   V Y ++     + +++SL D          +V+++
Sbjct: 376 LIGVIADKIESELKK---VGYEDSKIHKLVNLENSLQDMKKRFTKDSDEVILL 425


>gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. WCH70]
 gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           WCH70]
          Length = 451

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 120/346 (34%), Gaps = 34/346 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  I ITGS GKTTT  ++   L   +K     G+          +A+     ++ + 
Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGT---AACEVAKKAEASNWLVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  IR      RP I+V+  I  AHL      E  A AKA IF+         +
Sbjct: 167 ELSSFQLAGIRDF----RPRISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVI 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L    HA  +    +    + A              ++    +        
Sbjct: 223 NADDELVMQLAENIHAQKVAFSATKVLGRGAYI---------NNGFIYWNDEAVIAVADI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + +  +   D  +  + L+ F   +    R +           ++S
Sbjct: 274 VLPGKHNLENILAAVAVAKLAGVDNKSIYQVLTTFTGVK---HRLQYVATIDGRKFFNDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A+S   + S       + +L    + G    +       +  L+N+  V 
Sbjct: 331 KATNILATQKALSAFEKDS-------VILLAGGLDRGNEFDAL------LPYLHNVKAVV 377

Query: 406 LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     +     ++    + Y + ++            GDV+++
Sbjct: 378 LFGQTAPKIARVAKQAGIETIEYVDNVEKAVPVAYQLSEPGDVILL 423


>gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
 gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
          Length = 516

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 160/460 (34%), Gaps = 63/460 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R + P+  F  +KG       F    ++   G+  + ++    +    +P + V 
Sbjct: 47  LHYDTRQVEPETLFV-VKGA------FRPKYLENAQGITGIVSESQLPVD---LPQWQVT 96

Query: 90  DVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +V  AL+ L++A     +    I A TG+ GKTT   M    L +    +  + S  + I
Sbjct: 97  NVQKALSLLSMAFFDYPQKNLWIGAFTGTKGKTTAAYMTYNILKAATDNHTALFSTVDRI 156

Query: 148 GVPLTLARMPVD-VDFGIFEL----------GMSHL-------GEIRFLTHLVRPHIAVI 189
             P    R   D      +EL          GM+HL         ++   + +R  +   
Sbjct: 157 TGPKASDRKKSDLTTPESYELFKDMRRVVDNGMTHLIMEVSSQAYLKQRVYGLRYQVGAF 216

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             I+P H+        E+  + K  +F+    +  + +N +      +   +   G   I
Sbjct: 217 LNISPDHIGPNEHPNFEDYLAHKLMLFDH---SDKVIVNAESDHLSEIMTHAKK-GHDKI 272

Query: 248 YSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIV 303
           Y++  ++   ++          +S + VQ    S        +  G     N L  L + 
Sbjct: 273 YTYSNAEKGGEYTFTSQSSAIHESQLTVQASDLSEMAGAYRLNLPGDFNESNALAALIMA 332

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++  A  +  +K           G+     +       +D  Y  N ASM A +      
Sbjct: 333 ALAGAKHEAMVKG---LDTVFIPGRMLSLPIPNHGVAFVD--YAHNYASMHALLKFAQSQ 387

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
            P  +G+ I V+G     G    S   D   V+S      V+L+           + D +
Sbjct: 388 YP--DGKVIVVVGSP---GNKGVSRRADFGRVVSEL-ADVVYLTADDPQFESPKTIADEI 441

Query: 419 PRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              I+     VH+             +  D D+V+V  K 
Sbjct: 442 AAHINNPKLDVHFEMDRIAAINQALLAARDNDIVIVAGKG 481


>gi|325687135|gb|EGD29158.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK72]
          Length = 444

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 165/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG   +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGGFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|261211101|ref|ZP_05925390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
 gi|260839602|gb|EEX66213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
          Length = 451

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D+    +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDTALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHCKLLAALQQK 451


>gi|291566624|dbj|BAI88896.1| UDP-N-acetylmuramate--alanine ligase [Arthrospira platensis
           NIES-39]
          Length = 529

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 144/416 (34%), Gaps = 71/416 (17%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYA 138
            L  P+F   D+L AL               IA+ G+ GKTTT  ++   L         
Sbjct: 130 ELGCPIFHRSDLLAALMAEY---------QSIAVAGTHGKTTTSSLIAFLLLKAGLDPTI 180

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +G   +       +   P    + + E   S    ++   +     I ++T I   H  
Sbjct: 181 LVGGEVSAWEGNARVGHGP----YLVAEADESDGSLVKLGAY-----IGIVTNIELDHPD 231

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NA 256
           ++  ++++ S         E   TI    D               +K   S+  +   +A
Sbjct: 232 HYKNLDQLISTFKIFANQCE---TIVGCVDCPIVRDY--------LKPTISYSINPELDA 280

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D+ +   +  ++    +V  +G+++ ++    +G H   N L  + +  +L  +     +
Sbjct: 281 DYTVDAVQYLADGVIAQVYERGEAIGLLKLQLLGSHNLSNALAAVAVGRLLNWEFSVIAQ 340

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-------------- 361
           A++ F    G  +R+    N G    +D+ Y  +P+ ++  ++                 
Sbjct: 341 AIAEF---PGTKRRFEYRGNYGGIQFVDD-YAHHPSEIRVTLAAARGRLQNSSGLSSTFS 396

Query: 362 --QISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH-- 410
              I+P   G    R +A+          +++   D A+     ++   + ++ +G    
Sbjct: 397 ETAITPIHPGSEIKRVVAIF--QPHRYSRTETLLEDFAQCFGDADLVMLTEIYSAGEANP 454

Query: 411 -----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                            HV Y  ++D +   +   L  GD+V+   +      R+I
Sbjct: 455 GRINGQQLAARIAENHPHVDYQPSLDAVKTRLFQLLKPGDLVLFLGAG--NLNRVI 508


>gi|153830112|ref|ZP_01982779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
 gi|148874424|gb|EDL72559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
          Length = 451

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDKFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|291301477|ref|YP_003512755.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570697|gb|ADD43662.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
          Length = 473

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 142/368 (38%), Gaps = 28/368 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++    A   +    I ++G+ GKTTT  M+T  L++           N         A 
Sbjct: 102 HRSEALAAAMTGKKSIVVSGTHGKTTTTGMITDMLAAAG--------LNPSFVNGGESAA 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                  G  EL ++   E        RP ++++T I   HL+ +  IEE+    AE   
Sbjct: 154 DGRSGAHGSGELFVTEADESDRSFLRYRPFVSILTNIDVDHLNTYGTIEELVEGFAEFLR 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           G + +G+I +  DD     +  +  A G +T+ S+G    AD ++ +    +  +     
Sbjct: 214 GTDPSGSIIVCADDERAAAVGKRLAAEG-RTVVSYGTDAEADLRIGEITIDASGARYTAS 272

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G+ +        G H+A N    L    +L  DV+     L+ F    G  +R+    
Sbjct: 273 YRGRDLGSFFVTVPGRHLALNSAAALLAGLLLDVDVEELRTGLAAFT---GVRRRFELTG 329

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 + DE Y  +P +M AA+S L  I+    GR I V          ++    ++AE
Sbjct: 330 TVAGVRVYDE-YAYHPTAMNAALSTLKTIAE--PGRLIVVF--QPYRVYRTRDLRTEIAE 384

Query: 395 VLSLYN---ISHVWLSGFH------VLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG 444
            L+L +   +  V+  G           L +A+P       +      +   ++    +G
Sbjct: 385 ALALADLAVVMEVFGPGEELADDDGGRPLVEAIPLPPQAKRFVPQWSDVPGAVREWAREG 444

Query: 445 DVVVVKSS 452
           D VV   +
Sbjct: 445 DTVVTMGA 452


>gi|229490346|ref|ZP_04384187.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
 gi|229322636|gb|EEN88416.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
          Length = 502

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 144/440 (32%), Gaps = 65/440 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +       IPV     VL +L +               ++G+ GKT+T  M
Sbjct: 80  AAIPKDNPELVEAARRGIPVILRPAVLASLMQGNRTFL---------VSGTHGKTSTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +AL            ++    V   L     +   G  ++ ++   E         P+
Sbjct: 131 LVVALQHCG--------FDPSFAVGGELNEAGTNAHHGSGDVFVAEADESDGSLLQYDPN 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T I   HL  F  +E       +  + L   G +    DD     L  +    G  
Sbjct: 183 VIVVTNIEADHLDYFGSVEAYVKVFDDFVDKLRPGGLLIACLDDPGSADLAKRIVVSGRS 242

Query: 246 --TIYSFGKSK----------------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH- 286
              +  +G +                     +L  +        ++  L G+S       
Sbjct: 243 DIRVLGYGSADAQEVEAGTAFEPVDGVEVGVRLLGFHAHDVGGVLQFHLAGESAARTVRM 302

Query: 287 -GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HMA N L  L       A+ +  ++ L+ F    G  +R++    +    + D+ 
Sbjct: 303 AVPGRHMALNALAALLAARDAGAETEEIVEGLAGFG---GVHRRFQFTGRERGVRVFDD- 358

Query: 346 YNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHI------ 390
           Y  +P  ++A +   + +         +    GR I V      +   + +F        
Sbjct: 359 YAHHPTEVRAVLGAAADLVRPEDDSSSTNSAAGRVIVVF--QPHLYSRTAAFAEEFAQAL 416

Query: 391 DLAE---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           DLA+   VL +Y      + G     +  ++ +   VHY   +      + +    GD+V
Sbjct: 417 DLADEVVVLDVYGAREEPMPGVSGALVAQSVTK--PVHYQPDLSQAPKQVAALAHPGDIV 474

Query: 448 VVKSSNSCGF--YRLINLLL 465
           +   +        ++++ L 
Sbjct: 475 ITMGAGDVTMLGKQILDALR 494


>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
 gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
          Length = 441

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 135/414 (32%), Gaps = 64/414 (15%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAAR 103
           K P     DF   AV+ G  L V         G+  +   P      +   L     A  
Sbjct: 43  KNPKSVADDFRAEAVEAGYDLRVGAHGPADFAGADMVVLSPGIRAAGLADCLAACPGAQV 102

Query: 104 LRS--------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           L             I+A+TGS GKTTT  +++  L +  +     G+    +     LA 
Sbjct: 103 LSELELASWFVTEPIVAVTGSNGKTTTVMLVSHLLEAAGRKVFTGGNIGTPLS-EYVLAG 161

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            P DV   + E+    L     L    RP +AV+   +P HL   + +EE  SAK  IF 
Sbjct: 162 DPADVV--VLEVSSFQL----QLVKSFRPKVAVLLNFSPNHLDWHADLEEYLSAKLNIFA 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                 T  L  D    + L  +S                AD            +W E  
Sbjct: 216 AQRPGDTAILPRD--MRDALAGRSFTR-------------ADV-----------TWFE-- 247

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H  QNM              + A  A   F P      R +    
Sbjct: 248 -PSGRFVCP-RLAGAHNRQNMEAAFLATQPFGVTEEIAKVAFERFAPAP---HRLQIIGE 302

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G    +D+S     A+M+AA+          +     + G + + G+L+          
Sbjct: 303 KGGVLFVDDSKATTVAAMEAALRSF-------DRPVRLLCGGVFKGGDLAA------LSP 349

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    ++ V L G      + A    + + +  T+      + +    GDVV++
Sbjct: 350 LLKERVAAVGLFGAGREVFEAAWAGQVPLFHEPTLKPAVTRLFAEARPGDVVLL 403


>gi|322378887|ref|ZP_08053304.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
 gi|322380387|ref|ZP_08054593.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321147177|gb|EFX41871.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321148697|gb|EFX43180.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
          Length = 464

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 129/353 (36%), Gaps = 35/353 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
           +      IIAITGS GKT+ K  L   L      Y+ + S N  +G+   + +   +   
Sbjct: 133 KRMKNLQIIAITGSFGKTSVKNYLYQILQGKFTIYSSLNSVNTLLGLSQDINQNLDETST 192

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I+ +  L+  H A+IT I   H+  F  I+ I   KAE+ +      
Sbjct: 193 LYIAEAGARQKGDIKAIGSLLEHHYAIITEIGNQHIEYFKDIDSIYETKAELLQ--SPRL 250

Query: 222 TIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                YD    + F+  L  K                    Q+R      E +  E+ L 
Sbjct: 251 IQAFCYDKNPLEPFYTELTDKIKLYPG--------------QIRHANATLEGTSFELFLD 296

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            + +      +G     N+ + + +       +    + ++  +P   R           
Sbjct: 297 NQWVAFETKILGAFNVDNIALAVLMGHYFDISIPQLQRLVAKLNPVPHRLHPLHI----N 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +ID+ +N N   M  ++    +++    GRRI V   + E    S   +  LA+ + 
Sbjct: 353 DKFIIDDGFNGNLKGMLESV----RLASLYMGRRIIVTPGLVESDVES---NTTLAKAID 405

Query: 398 LYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                   ++G  +V      L R   V + +    L   +Q+  +  D+++ 
Sbjct: 406 SV-FDIAIITGELNVSVFAQNLQRPQRV-FLKDKGQLEQILQTITLAKDLILF 456


>gi|125718599|ref|YP_001035732.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK36]
 gi|166224742|sp|A3CPS7|MURC_STRSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125498516|gb|ABN45182.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Streptococcus
           sanguinis SK36]
          Length = 444

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 165/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG+  +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGSFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + + +       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSNA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDKGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|332362234|gb|EGJ40034.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1056]
          Length = 444

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 161/490 (32%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGSFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 510

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 143/420 (34%), Gaps = 63/420 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ++ DSR ++    FF           ++  A++KGA   V        + +  I V 
Sbjct: 29  FENVTYDSRKVSDNTLFFCKGNFKP---SYLTSALEKGATAYVSEQKYAEGMDATGIIVT 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNN 145
            V   +  L  +      +++  IIA TG+ GKTT+       L+ +  K  A   + + 
Sbjct: 86  NVQKAMALLGAVF-YGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDKKVALFSTIDR 144

Query: 146 ------------HIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        +  P +L       A +   +   + E+        +   + +   +
Sbjct: 145 VLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK--KNRVYGLTFDV 202

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        ++    K ++   L  +    +N + ++   +   + A   
Sbjct: 203 GVFLNISPDHIGRNEHPTFDDYLHCKEQL---LVNSKRCVINGETAYLRDVYYTAKATTE 259

Query: 245 -KTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV----------QLQGKSMEVVHH 286
            + IY F         +   D + +   +   +S +EV           + GK       
Sbjct: 260 PEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGK---YELS 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N    +    +  A  + A K L   H       R      +   T+  + Y
Sbjct: 317 VPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHIPG----RMEIIKTKNNGTIYVD-Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS+KA  + L Q +    GR IAVLG     G+   S      + +S   + HV L
Sbjct: 372 AHNYASLKALFAFLKQQT--HAGRVIAVLGSP---GDKGISRRPGFGKAVSE-EVDHVIL 425


>gi|224534179|ref|ZP_03674759.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
 gi|224514604|gb|EEF84918.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
          Length = 468

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 146/411 (35%), Gaps = 47/411 (11%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A  KG   V++          L+IPV    +VLG L++             I I GS G
Sbjct: 80  SAYDKGGLQVLL------EAKELNIPVLSYPEVLGELSRKYY---------SIGIAGSHG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT   L +  + +      I   +                  GI  + ++   E +  
Sbjct: 125 KTTTTAFLGLLFNKLGLNPNVIVGSSVKDFG-------DNSAIAGISNIFIAETCEYKKH 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P++ ++T I   H+  F   E +  A  +    L+K G + +N DD+    +K +
Sbjct: 178 FLYFSPNMLILTNIDYEHVDFFKNYEALEDAFLQYINNLKKNGILIINSDDNNLLKIKRQ 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +   I  I+SFG    ++FQ+      +E              +      +H   N   
Sbjct: 238 INRKDI-NIFSFGSKDLSNFQINNIVVENEYFCFSFL---GLCNIKLKTALFHNVLNFSA 293

Query: 299 TLGIVSILTADVDTAIKAL-----SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            L  +++       +I         +     G  +R      +     +D+ Y  +P  +
Sbjct: 294 ALLALNLFLESNGKSIFNFEEAVKKIAKNYSGIKRRVEVIKEKKGVIYMDD-YAHHPREI 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SH 403
           +     L  I    + +RI +L  M      ++ F  D  EVLS+ +I            
Sbjct: 353 R---DTLFGIKNFYKNKRI-ILDFMPHTFTRTKEFFNDFVEVLSVVDILILHNIYLSNRE 408

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +      + L   + + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 409 NFNPDELSVQLFLNIKKINKNTYFFKDVKDSIEFIKSLLISGDLFITMGAG 459


>gi|268319921|ref|YP_003293577.1| hypothetical protein FI9785_1451 [Lactobacillus johnsonii FI9785]
 gi|262398296|emb|CAX67310.1| murC [Lactobacillus johnsonii FI9785]
          Length = 437

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 117/356 (32%), Gaps = 46/356 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I ++G+ GKT+T  +L+  L  +  T   IG             +      F ++E  
Sbjct: 108 TSIGVSGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR---------GKGVEGSRFFVYEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E R       P   ++T I   H   F   ++  SA     +  +K   +F+  D
Sbjct: 158 ----DEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQTKK--ALFVWGD 211

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   + LK           Y++G     DFQ    ++ +  S   V   GK +     H 
Sbjct: 212 DKRLQSLKTDIPK------YTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHL 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    + +       ++   + L  F   +    R     + G  ++ID+ Y 
Sbjct: 266 FGDHSILNTTAVIAVAYTEKVPMNDIKEGLLTFKGAK----RRFAEKDFGDVSVIDD-YA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WL 406
            +P  M+A I    Q  P  E   + V          ++ +  D  E+L   + ++V  +
Sbjct: 321 HHPTEMRATIQAARQKFPDKE--LVVVF--QPHTFSRTKKYQKDFEEILRDVDKAYVTPI 376

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 A  D              V   + +  L            VVV   +   
Sbjct: 377 YASAREASGDISSEDLVNNIPGSEVIDLDNIADLTKH------KNAVVVFMGAGDI 426


>gi|227530463|ref|ZP_03960512.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349568|gb|EEJ39859.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 435

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 30/268 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I G+ GKT+T  +L   L  ++ T   IG           + +      F +FE  
Sbjct: 104 TSIGIAGAHGKTSTTALLAHVLDGVEPTSYLIGDG---------VGKGNAKDRFFVFEAD 154

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 + +      P  A++T I   H   F  I+++ ++     + ++K   IF   D
Sbjct: 155 EYRDHFLAY-----HPDYAIMTNIDFDHPDFFKDIDDVRNSFETYGKQVKK--AIFAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     L           +Y +G +   DF+    ++    S  +   + + +     H 
Sbjct: 208 DENLRKLDVDV------PVYYYGTNDKDDFRAENIQRTPAGSTYDAYFKDQKLGTFTIHL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +  +   D+    + L+ F   +    R     +    TLID+ Y 
Sbjct: 262 YGEHSVLNSLAVIAVAYMEHVDMADIKRELANFTGVK----RRFSETDIADETLIDD-YA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL 375
            +P+ +KA I    Q   + + + IAV 
Sbjct: 317 HHPSEIKATIDAARQ--KYPDRQVIAVF 342


>gi|315633815|ref|ZP_07889104.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
 gi|315477065|gb|EFU67808.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
          Length = 434

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 132/348 (37%), Gaps = 42/348 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+AITGS GK+T   ++     +   +    G+          L+ +    D  
Sbjct: 100 READKPIVAITGSNGKSTVTTLVAEMAKAAGLSVGMGGNIGIP-----ALSLLNQSHDIY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    L      T+ ++   A +  +   H++ +  +++   AK +I++  +   T 
Sbjct: 155 ILELSSFQL----ETTYSLKTVAATVLNVTEDHMNRYVDLQDYRHAKLKIYDNCQ---TA 207

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D     L   +     K + SF +  +AD+ L+      E     +  +G+ +  
Sbjct: 208 VVNGEDP----LTLPTTQHPEKRV-SFAEH-HADYWLKN-----ENQKTYLMARGEVILA 256

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +      ++     AL  F    G   R++ A        
Sbjct: 257 CDEMKLTGRHNYMNALAAIALAQAAGINLLGIQTALREFG---GLEHRFQVAHMAHGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L        G+   +LG   +  + S     +LA +++  +I
Sbjct: 314 INDSKATNVGSTVAALTGLQ-----VAGKLYLLLGGDGKGADFS-----ELATLINQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S      +TM+     I+  L  GDVV++
Sbjct: 364 -FCYCFGQDGKQLAALSSQS---QLFDTMEQAIAAIRPQLQAGDVVLL 407


>gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 510

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 63/420 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ++ DSR ++    FF           ++  A++KGA   V        + +  I V 
Sbjct: 29  FENVTYDSRKVSDNTLFFCKGNFKP---SYLTSALEKGATAYVSEQKYAEGMDATGIIVT 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNN 145
            V   +  L         +++  IIA TG+ GKTT+       L+ +  K  A   + + 
Sbjct: 86  NVQKAMALLGAAF-YGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDKKVALFSTIDR 144

Query: 146 ------------HIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        +  P +L       A +   +   + E+        +   + +   +
Sbjct: 145 VLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK--KNRVYGLTFDV 202

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        ++    K ++   L  +    +N + ++   +   + A   
Sbjct: 203 GVFLNISPDHIGRNEHPTFDDYLHCKEQL---LVNSKRCVINGETAYLRDVYYTAKATTE 259

Query: 245 -KTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV----------QLQGKSMEVVHH 286
            + IY F         +   D + +   +   +S +EV           + GK       
Sbjct: 260 PEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGK---YELS 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N    +    +  A  + A K L   H       R      +   T+  + Y
Sbjct: 317 VPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHIPG----RMEIIKTKNNGTIYVD-Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS+KA  + L Q +    GR IAVLG     G+   S      + +S   + HV L
Sbjct: 372 AHNYASLKALFAFLKQQT--HAGRVIAVLGSP---GDKGISRRPGFGKAVSE-EVDHVIL 425


>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
 gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
          Length = 438

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+    +   LTL + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAQAAGWQVGVGGNIGLPV---LTLLQQPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTRSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAT---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG    AD       +    +W+ VQ +     
Sbjct: 209 CVVNADDAMTIPVRGADA-----RCLSFG----ADVGDYHLTRQQGSTWLRVQGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H +G H   N L  L +   +     +++ AL+ F   +G   R++          I
Sbjct: 260 DEMHLVGQHNYTNALAALALADAVGLPRASSLTALTTF---KGLAHRFQLVHEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    I 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HPAGILWLLLGGDGKSADFSP-----LTRYLQGDRI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L  AL   I V  +ETM      I + +  GD+V++
Sbjct: 366 RIYCFGRDGAELA-ALRPEIAVQ-TETMAAAVRQIATRVQPGDMVLL 410


>gi|229527526|ref|ZP_04416918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|229335158|gb|EEO00643.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|327485027|gb|AEA79434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae LMA3894-4]
          Length = 451

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D+    +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDTALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEKVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius UCC118]
 gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus salivarius UCC118]
          Length = 510

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 63/420 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ++ DSR ++    FF           ++  A++KGA   V        + +  I V 
Sbjct: 29  FENVTYDSRKVSDNTLFFCKGNFKP---SYLTSALEKGATAYVSEQKYAEGMDATGIIVT 85

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNN 145
            V   +  L         +++  IIA TG+ GKTT+       L+ +  K  A   + + 
Sbjct: 86  NVQKAMALLGAAF-YGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDKKVALFSTIDR 144

Query: 146 ------------HIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                        +  P +L       A +   +   + E+        +   + +   +
Sbjct: 145 VLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK--KNRVYGLTFDV 202

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        ++    K ++   L  +    +N + ++   +   + A   
Sbjct: 203 GVFLNISPDHIGRNEHPTFDDYLHCKEQL---LVNSKRCVINGETAYLRDVYYTAKATTE 259

Query: 245 -KTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV----------QLQGKSMEVVHH 286
            + IY F         +   D + +   +   +S +EV           + GK       
Sbjct: 260 PEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGK---YELS 316

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N    +    +  A  + A K L   H       R      +   T+  + Y
Sbjct: 317 VPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHIPG----RMEIIKTKNNGTIYVD-Y 371

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS+KA  + L Q +    GR IAVLG     G+   S      + +S   + HV L
Sbjct: 372 AHNYASLKALFAFLKQQT--HAGRVIAVLGSP---GDKGISRRPGFGKAVSE-EVDHVIL 425


>gi|307610451|emb|CBX00022.1| hypothetical protein LPW_17781 [Legionella pneumophila 130b]
          Length = 441

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 128/357 (35%), Gaps = 25/357 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IA+ G+ GKTTT  M+   L          IG  ++       L +      + +
Sbjct: 89  SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKG----RWFV 144

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP+IAV+  +   H   +  +  I      +   + K+G 
Sbjct: 145 IEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV 204

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
                DD     + ++        I +   S  A++           S  ++   G  + 
Sbjct: 205 AIKPRDDKALNEVLSRGQ---FSRIETLALSGEAEWVAELIDDS--GSQFKILHNGGVVA 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG    +N L  +        +   A KAL  F P +   +R     N+   T+
Sbjct: 260 EVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSPVK---RRLEVRSNRHGITV 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   I  L +   H   R  AV+    E    +    +  AE+  +L  
Sbjct: 317 YDD-FAHHPTAITKTIDALKRSGRHQ--RIFAVM----EFASYTMRTGVHAAEMAHALAP 369

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   ++       LKD +   +      +  + +   I  ++ +GD V+V S+    
Sbjct: 370 VDGAYVLEPQDFNLKDFVSSWTCPYKICKNNEEIVNEIIKAVREGDAVLVMSNRGFN 426


>gi|160878268|ref|YP_001557236.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
 gi|189029008|sp|A9KQI8|MURC_CLOPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160426934|gb|ABX40497.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
          Length = 469

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 142/426 (33%), Gaps = 57/426 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +     ++   +IP+    D LG +      A        I ++G+ GKTTT  M
Sbjct: 77  AAVKSDNVEYQAVQKHNIPMLDRADFLGQVMLQYKNA--------IGVSGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ +          G+++  I V   L  +  ++  G  E  +    E +       P 
Sbjct: 129 VSLMM--------LEGNFDPTISVGGILDNIEGNIRIGHSENFIVESCEYKNSFLSFNPA 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+I  I   HL  F  IE+I ++     + L   G + +      +E L          
Sbjct: 181 HAIILNIEAEHLDFFKDIEDIRTSFHTFAKKLPDYGNLVVWGGIDRYEELIEDLSC---- 236

Query: 246 TIYSFGK----------SKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVV-HHGIGYHMA 293
            + ++G               D+               ++   GK ++ +    IG H  
Sbjct: 237 NVITYGMFSSEEEREQNKDRYDYAACNVTSDDFGLRSYDLYKHGKFVDRINLAVIGDHNV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +V  L   +    KA       +G  +R+         T++D+ Y  +P+ +
Sbjct: 297 LNSLAAISLVDTLGGTMSAIKKA---LLAYKGTERRFERKGVLNGITIVDD-YAHHPSEI 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KA +   +            V          ++SF  D    L+L     + L+  +   
Sbjct: 353 KATLIAAASYPHKD---IWCVF--QPHTYTRTKSFFHDFTTALAL--ADKIVLADIYAAR 405

Query: 414 LK------------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +            + L      +Y      +  F+     +GD+++   +       + 
Sbjct: 406 EENPGDISSKDIQNELLKIGKEAYYISDFAEIEKFLLEHCTNGDLLITMGAGDV--VSIG 463

Query: 462 NLLLEE 467
             LL++
Sbjct: 464 ESLLQK 469


>gi|325286926|ref|YP_004262716.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga lytica DSM
           7489]
 gi|324322380|gb|ADY29845.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga lytica DSM
           7489]
          Length = 448

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 128/384 (33%), Gaps = 50/384 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   + +      + G+ GKTTT  +L   L        A +G  +           
Sbjct: 101 RSEVLGIITNNTFCFGVAGTHGKTTTSSILAHLLHETGTPITAFLGGISEDFNSNF---- 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    D+ + E        ++     + P++A IT++   HL  +   +++  A      
Sbjct: 157 LLEGTDYSVVEADEFDRSFLQ-----LSPNVACITSMDADHLDIYGTGDDLKDAFVAYVN 211

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            LE  G +F+                    +  ++G   ++DF +   +  +      ++
Sbjct: 212 RLEPNGKLFV--------------RNGLPLSGITYGIEDDSDFCITDVEIKNGSYIFSIK 257

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                +  V  +  G H   N L+   +        +    AL  F   +G  +R+   +
Sbjct: 258 TPNAVVNGVKFNKPGRHNLLNGLVAFAMALEAGKSPEIVAAALGTF---KGVQRRFSYRI 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA- 393
            +  F  ID+ Y  +P  + A    +S++ P+   + +AV      +   ++ F  D A 
Sbjct: 315 KEEDFVFIDD-YAHHPTEINAVYEAVSEMHPNK--KTVAVF--QPHLYSRTKDFIDDFAV 369

Query: 394 --------EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y      + G     L   +          +   L   ++    +  
Sbjct: 370 SLSQFQSVILLDIYPAREEPVEGVTSEWLLGKIKNPNKKIC--SKKELISELKKQNPE-- 425

Query: 446 VVVV-KSSNSCGFYRLINLLLEEF 468
            V+V   +   G    I+ +   F
Sbjct: 426 -VLVAMGAGDIGQE--IDKIKNAF 446


>gi|326797502|ref|YP_004315321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
 gi|326548266|gb|ADZ76651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
          Length = 457

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 127/381 (33%), Gaps = 46/381 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V ++    IPV           ++  AAR    A  + ITGS GK+TT  +    L    
Sbjct: 90  VQALRKQRIPVI---------GEIEFAARYT-DAKTVCITGSNGKSTTTMLTYHILQKAG 139

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                 G+      + +         +  + E+    L ++    +  R  IAV+  I P
Sbjct: 140 INVGLAGNIGKSFALQV----ATEQYEVYVLEISSFMLDDM----YDFRADIAVLLNITP 191

Query: 195 AHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            HL  +   +E   ++K  I     +        DD   E  KA +      T+Y F  +
Sbjct: 192 DHLDRYDYKMENYVNSKFRITRNQRENDIFIYCKDDP--ETNKALTAKEINATMYPFSLT 249

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTAD 309
           +   +        +E+  + + L  +   ++        G H   N + +  +  +    
Sbjct: 250 EEVQYGA----YLNEEKEIVITLPNQERFIMSINDLALQGKHNVYNNMASGIVAKVWELR 305

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            ++  +++  F        R            I++S   N  S+  A+  L        G
Sbjct: 306 NESIRESMGDFVNIP---HRLEHVTKISGIEFINDSKATNVNSVWYALESL-------PG 355

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + ++G + +  + S      +   L    +  +   G     + +A      V   ++
Sbjct: 356 KIVLIMGGVDKGNDYS------MLRELVQSKVRGIVCLGKDNRNIHNAFEADTDVIVNTQ 409

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           TM             GD V++
Sbjct: 410 TMSEAVQIAYHIAQKGDTVLL 430


>gi|254291457|ref|ZP_04962249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
 gi|150422647|gb|EDN14602.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
          Length = 451

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D+    +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDTALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|153801140|ref|ZP_01955726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
 gi|124123373|gb|EAY42116.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
          Length = 451

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D+    +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDTALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V L+G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|260495140|ref|ZP_05815268.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197197|gb|EEW94716.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 468

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 139/397 (35%), Gaps = 46/397 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  + A+L ++ T IA+ G+ GKTTT  ML+  + S   T          I V   L 
Sbjct: 96  LKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPT----------IVVGGILP 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G  E  ++   E       + P  +VIT I   HL     ++ I  +  +  
Sbjct: 146 EIKSNARPGKSEYFIAEADESDNSFLFMYPKYSVITNIDADHLDVHGNLDNIKKSFIKFI 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
              +K     +  D        A S     KT+ ++  K +NA+   +  +    ++  E
Sbjct: 206 CHTQKE--AIICMDCENLRD--AVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFE 261

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +  + + E   +  G H   N L  + +            + L  F   + R      
Sbjct: 262 LYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGVSKGEIQETLHNFKGSKRRYDVLFD 321

Query: 333 ALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------ 380
              +  +        I + Y  +P  +KA +  +  I       R+ V+           
Sbjct: 322 NDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKSIDKS----RLVVIFQPHRYSRVHF 377

Query: 381 -MGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFI 437
            + E   +F  D+ +V+ L     ++ +G         + L   I+ +  E M+  +  +
Sbjct: 378 LLDEFKDAF-KDVDKVILL----PIYAAGEKNEFNISSEILKEHINHNNVENMNE-WKDV 431

Query: 438 Q---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +   S +      +   +       L + + EE   +
Sbjct: 432 KRYVSRVKKDSTYIFMGAGDI--STLAHQIAEELEGM 466


>gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41317]
          Length = 450

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEALIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|332518981|ref|ZP_08395448.1| UDP-N-acetylmuramate/alanine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332044829|gb|EGI81022.1| UDP-N-acetylmuramate/alanine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 450

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 144/386 (37%), Gaps = 48/386 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
           L +  +   +      +A+ G+ GKTTT  +L   +        A +G  + +    L L
Sbjct: 99  LKRSEILGLITENTYCLAVAGTHGKTTTTSILGHIMRECNVPLTAFLGGISENYSSNLIL 158

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                       E+ +    E       + P +A IT++   HL  +    E+     + 
Sbjct: 159 NGD---------EVSVVEADEFDRSFLTLSPDLACITSMDADHLDIYGDASELVKTFEDF 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L+  G +F+              + L +K I ++G   +AD+ ++  K  +     +
Sbjct: 210 AKKLKPNGKLFV-------------KNGLPLKGI-TYGIEDDADYAVQNIKIENGTYVFD 255

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V++    ++ V  +  G H   N L+ L +            KAL+ +   +   +R+  
Sbjct: 256 VKMPNTILKQVKFNLPGRHNLSNALIALAMAVEYGLPKPQLAKALASYKGVK---RRFTY 312

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +       ID+ Y  +P  +KA    + ++ P  E   + V+     +   ++ F ++ 
Sbjct: 313 QIKTNELVFIDD-YAHHPEEIKAVHQAVREMYPKDE---VLVVFQ-PHLFSRTKDFGVEF 367

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           A+         +L +Y    + + G +   L + +  +      E    +   I++S   
Sbjct: 368 AQSLSMFDEILLLDIYPARELPIEGINSKWLLNKI-NNPKKQLIE-KSQIINKIKASKSK 425

Query: 444 GDVVVVKSSNSCGFY-RLI-NLLLEE 467
             +++   +   G   ++I   L+ E
Sbjct: 426 --IILTLGAGDIGAEVKIIKQALINE 449


>gi|295397238|ref|ZP_06807336.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
 gi|294974519|gb|EFG50248.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
          Length = 447

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 132/397 (33%), Gaps = 52/397 (13%)

Query: 74  MVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
              + G     V    ++ L  +        L    T +AITGS GKT+T  ++   +  
Sbjct: 69  CGNAFGDDHPEVVRAKELGLDVMRYHFFLGELIKDYTSVAITGSHGKTSTTGLMAHVMRG 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +  T   IG                 D ++ + E        + +      P  A+ T I
Sbjct: 129 LHPTNFLIGDG---------TGAGQEDAEYFVLEADEYRKHFLAY-----HPDYAIFTNI 174

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG- 251
              H   +  I+++ +A       ++K   +     D++      +S       ++ +G 
Sbjct: 175 DFDHPDYYENIDQVFAANTTFAHQVKKK--VIAYGGDAYLRQFADQSDI----DVWYYGL 228

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADV 310
           +  +           ++ S  +V + G+          G H   N L  +G   +     
Sbjct: 229 EGGDNHIVASNVDLATDGSHFDVHVMGEFYGHFDIPTFGEHNVMNALSVIGFCYLENFPA 288

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-------- 362
           D   + L  F   +    R       G  TLID+ Y  +P+ +KA I+   Q        
Sbjct: 289 DRVAEELRTFGGVK----RRFSEKKIGDMTLIDD-YAHHPSEIKATINAARQKYPNKKIV 343

Query: 363 --ISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALP 419
               PH   R IA++ +     +LS   ++ ++       +   V      V  L + + 
Sbjct: 344 SVFQPHTFSRTIALMDEFAGALDLSDDVYLCEIFASAREKDNKQV-----SVSDLANKVT 398

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
           + + V   E +  L  +        D V++   +   
Sbjct: 399 KPVQVLPLENVSPLLDY-------DDAVMIFMGAGDI 428


>gi|262401830|ref|ZP_06078395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
 gi|262351802|gb|EEZ00933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
          Length = 451

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 142/413 (34%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMVAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLDHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D       A     G  +
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEAL----ADVFKRGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   +  ++Q  K    ++ S   V  +G+ + +V    +G H   N LM +  V  
Sbjct: 237 ETEFS-GEQGEWQAEKI--TADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAVRH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL +   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLRSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAKAGDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|54294640|ref|YP_127055.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
 gi|53754472|emb|CAH15956.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
          Length = 455

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 127/357 (35%), Gaps = 25/357 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IA+ G+ GKTTT  M+   L          IG  ++       L +      + +
Sbjct: 103 SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKG----RWFV 158

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP+IAV+  +   H   +  +  I      +   + K+G 
Sbjct: 159 IEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
                DD     + ++        I +   S  A++           S   +   G  + 
Sbjct: 219 AIKPRDDKALNEVLSRGQ---FSRIETLALSGEAEWVAELIDDS--GSQFNILHNGGVVA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG    +N L  +        +   A KAL  F P +   +R     N+   T+
Sbjct: 274 EVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSPVK---RRLEVRSNRHGITV 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   I  L +   H   R  AV+    E    +    +  AE+  +L  
Sbjct: 331 YDD-FAHHPTAITKTIDALKRSGRHQ--RIFAVM----EFASYTMRTGVHAAEMAHALAP 383

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   ++       LKD +   +      +  + +   I  ++ +GD V+V S+    
Sbjct: 384 VDGAYVLEPQDFNLKDFVSSWTCPYKICKNNEEIVKEIIKAVREGDAVLVMSNRGFN 440


>gi|293391356|ref|ZP_06635690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951890|gb|EFE02009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 434

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 130/346 (37%), Gaps = 38/346 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+AITGS GK+T   ++     +        G+          L+ +    D  
Sbjct: 100 READKPIVAITGSNGKSTVTTLVAEMAKAAGLRVGMGGNIGIP-----ALSLLNQQYDLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  +   H++ +  +++   AK  I+   +   T 
Sbjct: 155 VLELSSFQL----ETTYSLKAVAATVLNVTEDHMNRYMDLQDYRHAKLNIYNHCQ---TA 207

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D+              +   SFG++ +AD+ L   K  + ++++    +      
Sbjct: 208 VINAEDAL-----TLPATQRPQKQVSFGEN-HADYWL---KTENNKTYLMAYDEAVLACD 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +      ++     AL  F    G   R++ A        I+
Sbjct: 259 EMKLTGRHNYMNALAAIALAQAAGINLTGIRTALCAFG---GLEHRFQVAHIADGVRWIN 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L        G+   +LG   +  + S     +LA +++  +I+ 
Sbjct: 316 DSKATNVGSTVAALTGL-----QVAGKLHLLLGGDGKGADFS-----ELARLINQPHIN- 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S      +TM+     I+  L  GD+V++
Sbjct: 365 CYCFGRDGKQLAALSSQS---QLFDTMEHAIAAIRPQLQAGDMVLL 407


>gi|163868712|ref|YP_001609924.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella tribocorum CIP
           105476]
 gi|189028974|sp|A9IWA4|MURC_BART1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161018371|emb|CAK01929.1| UDP-N-acetylmuramate--alanine ligase [Bartonella tribocorum CIP
           105476]
          Length = 475

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 146/433 (33%), Gaps = 55/433 (12%)

Query: 47  KGPHYDGHDFILHAVQKGAG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           KG +     +  +            V        +     +P+    ++L  L +   A 
Sbjct: 51  KGINVHIGHYAENLGNAEVVVFSTAVKKTNPEYIAAKERHLPLVRRAEMLAELMRFRRA- 109

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                   IA+ G+ GKTTT  M+   L +       I   N  I           + D+
Sbjct: 110 --------IAVGGTHGKTTTTSMVAALLDAGHFDPVVI---NGGIINAYGTNSRTGEGDW 158

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E   S    ++     +   IAV+T I   HL ++   + + +A  +  E +   G 
Sbjct: 159 MIVEADESDGTFLK-----LPADIAVVTNIDAEHLDHYGSFDAVRTAFRQFVENVPFYGF 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----G 278
             L  D    + L  +   +  + + ++G +  AD +     +  +++  +V ++    G
Sbjct: 214 AVLCVDHPEVQSLAGR---IDDRWVITYGANPQADVRFLNLSRDGQKTHFDVLVRSRKTG 270

Query: 279 KSME---VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + +E   ++    G H   N    + I   L    +   K L+ F   + R  R      
Sbjct: 271 RKIELKNLLLPMAGQHNVANATAAIAIAHELGISNELIKKGLAEFGGVKRRFTR----TG 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------ 389
                 I + Y  +P  +KA   VL       +GR IA+     +    S+ +H      
Sbjct: 327 SWRGIEIFDDYGHHPVEIKA---VLRAARESAKGRVIAI----AQPHRYSRLYHLFDDFA 379

Query: 390 -----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442
                 D   +  +Y      + GF    L + +  + H  V     ++ +   +     
Sbjct: 380 ACFNDADTVLITPVYAAGEEPIVGFGSQELVEHIKMAGHRDVRLIHDLEDVVSLVSKFAQ 439

Query: 443 DGDVVVVKSSNSC 455
             D VV   + + 
Sbjct: 440 AEDYVVFLGAGNI 452


>gi|315181132|gb|ADT88046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           NCTC 11218]
          Length = 439

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 154/427 (36%), Gaps = 60/427 (14%)

Query: 31  SIDSRSIAPQE----AFFAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ID+R   P +    A  A+    ++         +    G+ +   ++  ++ + +IPV
Sbjct: 37  VIDTREAPPGQEQLPASVALHSGSWNVAWLLAADLIVANPGIALATPEIQQALAA-NIPV 95

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            G  ++                  +IAITGS GK+T  ++  +  ++     A  G+   
Sbjct: 96  VGDIELFAW----------HVDKPVIAITGSNGKSTVTDLTGVMANAAGIATAVGGNIGV 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                L L   P +    + EL    L      T  +    A    ++  H+  + G+  
Sbjct: 146 P---ALDLLAQPAE--LYVLELSSFQL----ETTSSLAVTAAAFLNLSEDHMDRYDGMTG 196

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AK  IFE  +   T  +N DD+     +    A   +T+  FG  ++A+F       
Sbjct: 197 YRQAKLRIFEHAQ---TAVVNADDT-----QTYPDAYSGRTV-RFGLEQSAEFT------ 241

Query: 266 CSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            ++    EV L    +         +G H   N+L  L ++     +    + A      
Sbjct: 242 TAQHDGKEVLLANGEVVLPTSDLSLVGRHNVANVLTVLALLDAAGVNYTNTLPA---LKS 298

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G   R +   +      +++S   N AS  AA+S L+       G    ++G + +  
Sbjct: 299 YTGLTHRCQVVADNQGIKWVNDSKATNVASTLAALSGLT-----LNGTLYLLVGGVGKGA 353

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + +      L  VL    ++ +   G         +P        +TM+ +   I+  L 
Sbjct: 354 DFTP-----LKPVLETLPLT-LCCFGRDGD---QFMPLHASAQRFDTMEAIIASIRPQLK 404

Query: 443 DGDVVVV 449
            GD+V++
Sbjct: 405 AGDMVLL 411


>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 130/351 (37%), Gaps = 38/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A++  D D
Sbjct: 106 AYLISEALIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQIASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN++    + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 272 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 325 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 372 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 421


>gi|320546319|ref|ZP_08040638.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
 gi|320449040|gb|EFW89764.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
          Length = 451

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/352 (20%), Positives = 128/352 (36%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A + S A II ITGS GKTTT  M+   L++  ++    G+          +A+   D D
Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGQSGLLSGNIGFP---ASEVAQTATDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T    PHIAVIT + P H+      E    AK  I + +    
Sbjct: 163 TLVMELSSFQLMG----TDTFHPHIAVITNLMPTHIDYHGTFENYVVAKWNIQKNMTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I LN++    + L  K+ A     +  F  ++  D                +  +G+++
Sbjct: 219 FIVLNFNQDLAKELAEKTAA----QVVPFSTTEKVDGAYLDGD--------TLYFKGEAI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +     +   + LS F   +    R +        
Sbjct: 267 MKASEIGVPGSHNVENALATIAVAKLSGIANEAIKETLSHFGGVK---HRLQALGEVNGV 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + N  + + A+S           + I + G   + G        D+       
Sbjct: 324 KFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDI------T 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +K A  ++ +V Y +   +        S    G+VV++
Sbjct: 371 GVKLMVILGESAPRVKRAADKA-NVPYVDAKDVADAARIAYSKAEAGEVVLL 421


>gi|227538303|ref|ZP_03968352.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241818|gb|EEI91833.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 126/385 (32%), Gaps = 49/385 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   + +    IA+ G+ GKTTT  M+   L       +      +       L   
Sbjct: 102 RSQVLGFISASRFTIAVAGTHGKTTTSTMIAHILKDSGYDCSAFLGGISSNYDSNVLFGA 161

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              V   + E       E       + P+IAV+T+    HL  +     +  + +   + 
Sbjct: 162 NNTV---VVEA-----DEYDRSFLTLHPNIAVVTSADADHLDIYGDESHLIESFSLFLDR 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQ 275
           + + GT  +                L  K   S+      D           + + + V 
Sbjct: 214 VVEGGTRIV-------------KTGLPFKGQISYSGKGEGDVYAENIHVRDGEFYFDYVH 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +GK  ++     G H  +N +  +    +L       + ALS F   + R +       
Sbjct: 261 PEGKISDIHLGIPGIHNVENAVAAITAARLLGIADAKIVTALSTFKGVKRRFEYIV---- 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +   T+  + Y  +P  ++A IS + ++ P    +   V      +   ++ F    AEV
Sbjct: 317 RNPQTIYIDDYAHHPEELRAFISSMRKLYP--TKKLTVVF--QPHLFSRTRDFVDGFAEV 372

Query: 396 LS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           L+         +Y    + + G     L D +        S     +   I+    +  +
Sbjct: 373 LAMADELLLMEIYPARELPIEGVTSTWLADKIALENKRVVSP--QEVLDIIKEEKPE--L 428

Query: 447 VVVKSSNSCGFYRLINLLLEEFPAI 471
           VV   +        I+ L++   AI
Sbjct: 429 VVTVGAGD------IDRLIKPLKAI 447


>gi|328952332|ref|YP_004369666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452656|gb|AEB08485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 467

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 121/344 (35%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  + AI+G+ GKTTT  ++   L +  K     G+    +   + L     + D  I E
Sbjct: 114 KRPVAAISGTNGKTTTTTLVGKMLLASGKRPLVGGNIGTPL---VDLLSQQAEADCIILE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP  A +  I+  HL  +   +  A +KA +F     + T  LN
Sbjct: 171 VSSFQLD----TAPSFRPRAAALLNISEDHLDRYPDFQAYARSKAGLFRRQGPSETAVLN 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVH 285
            DD     L  +  +     +Y F   K   F    W+          +           
Sbjct: 227 ADDPKAAALADQVQS----QVYLFSTRKKLTFGA--WQAGESLRVCLARGPEAKFPLNKI 280

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N++  L +   + A      +AL+ F   +G   R     N G     D+S
Sbjct: 281 VLPGRHNLENIMAALLLALEMGATPQGCAEALARF---KGLPHRLEWVANIGGVDFYDDS 337

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  ++  ++        H +   + + G   + G+     +  L+ +L    +  V 
Sbjct: 338 KGTNVGAVVRSLE-------HFDRPVVLIAGGRDKGGD-----YRPLSALLRQR-VKKVI 384

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     +  AL  +  +  +  M        ++   G+VV++
Sbjct: 385 LLGEAQDKIAAALSGAALMQPAADMAQAVELAYAAASSGEVVLL 428


>gi|94985731|ref|YP_605095.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus geothermalis DSM
           11300]
 gi|189029012|sp|Q1IXV8|MURC_DEIGD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94556012|gb|ABF45926.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus geothermalis DSM
           11300]
          Length = 465

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 150/426 (35%), Gaps = 53/426 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A   G  +++ +  +  +   L        +V   +  L    R       + 
Sbjct: 69  GHD---PAHVTGVDVLIASEAVPKNHPELVAARGAGVEVRPRMALLDELLRA---GPSVG 122

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           + G+ GKTTT  M+ +A+       A  +G      G  + L          + E+  S 
Sbjct: 123 VIGTHGKTTTTSMIAVAMQGAGLDPAAFVGGIVPEFGSNVRL-----GTGPFVAEVDESD 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLS-----NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            G       ++    AV T     H+       +  +E+  +A A       +   +   
Sbjct: 178 RGF-----AVLSCETAVFTNAEDDHVGGNQATYWETVEQQHAAFARFVGQARR---VLYC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            D    + L   S         ++G ++ AD++    +  +E +   V  +G+ + E   
Sbjct: 230 ADWPGLDQLVTTSGER-----LNYGLAEGADYRAVDLRPDAEGTTFTVARRGEVLGEARV 284

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L +  +   +  TA  AL+ F    G G+R++         +ID+ 
Sbjct: 285 GLPGLHNVLNALAALAVTDLYGGNFQTAAAALAAF---RGPGRRWQRIGELNGALIIDD- 340

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VL 396
           Y  N   + A     +  +    GRR+ V+          QS+   LA+         VL
Sbjct: 341 YAHNATKVAA-----AVQAARQTGRRVRVVFQPHRYLRTQQSW-PRLADALMGADEVLVL 394

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +   S   + G H   + D + +S H  V Y+     +  +++ +    DV+V   +  
Sbjct: 395 DIATASEPPIPGIHATLVSDRMAQSGHTGVRYAPDRAEVVRYLRETACADDVIVTMGAGD 454

Query: 455 C-GFYR 459
                R
Sbjct: 455 VWKLSR 460


>gi|2780743|dbj|BAA24358.1| MurC [Porphyromonas gingivalis]
          Length = 433

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 141/393 (35%), Gaps = 46/393 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V  +   +    S    V    +VLG +  +  A         + + G+ GKTTT  +L
Sbjct: 75  AVPADHSELTYFRSNGYRVVKRAEVLGEITLMERA---------LCVAGTHGKTTTSTLL 125

Query: 127 TIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L        A +G  +N+    L L+      D  + E       E     H ++P 
Sbjct: 126 AHLLKQSHVDCNAFLGGISNNYQSNLLLS---DKSDLVVVEA-----DEFDRSFHHLKPF 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT+  P H+  +   E    +       ++  G + L Y       L +        
Sbjct: 178 MAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGAPVNPRLGSDV------ 231

Query: 246 TIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIV 303
           +++++    + AD+          + +      G  +E V  G+      +N +  + I 
Sbjct: 232 SLFTYSSDDRQADYFASDIMIRDGRLFFTWHYPGGQLEEVELGVPVRINVENAVAAMAIA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +    V+     ++ F   +G  +R+   L+     LID+ Y  +P  + AAI  + +I
Sbjct: 292 HLNGVTVEELRSGIASF---KGSHRRFEKVLDTERVVLIDD-YAHHPVELDAAIRSVREI 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
                G+ I  +     +   +  F+ D A+         +L +Y    + L G     +
Sbjct: 348 ---YSGKHIMGIFQ-PHLYSRTADFYQDFAKSLSMLDQVVLLDIYPARELPLPGVTSRLI 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            D +        S+    L  ++  + +  DVV
Sbjct: 404 LDLIENPNKTLVSKN--DLLDYLHGNEIP-DVV 433


>gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 464

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 104/360 (28%), Gaps = 43/360 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                  +   +IA+TGS GK+TT  ++   L+   +     G+    +           
Sbjct: 111 PEWNNYDTPPRVIAVTGSNGKSTTAALIHHILTEAGREAQLAGNIGRGVLDIDP----GG 166

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D    + EL          L   + P +AV T ++P HL    G+    +AK  +F    
Sbjct: 167 DGSVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGG 222

Query: 219 KTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 +  D+     L  + +   G   +     ++        W+  + + ++    +
Sbjct: 223 PD-RAVIGVDEIEGAFLAGQLAEGAGDDRVIRVSVARK--LAGPGWQVFARKGFLSEYRK 279

Query: 278 GK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           G+      +  +    G H  QN          L         A    H   G   R + 
Sbjct: 280 GRQAASIDLRDIKGLPGTHNHQNACSAYAACRALGLAPKMIEDA---LHSYPGLPHRSQV 336

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T +++S   N  S   A+    +I     G                     + 
Sbjct: 337 IAEANGVTFVNDSKATNVDSAVKALGAFKKIRWICGG------------------LEKEG 378

Query: 393 AEVLSLYNISHV---WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      V   ++ G    A   A+  S+      TM             G+ V++
Sbjct: 379 GIAALNDATDEVLCAYVIGREAAAF--AMQLSVETRVCTTMAEAVEQAMRDAAPGETVLL 436


>gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 120/358 (33%), Gaps = 34/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R    A +I ITGS GKTTT  ++              G+    + + +   
Sbjct: 91  ISEIEFAGRYTH-AKMICITGSNGKTTTTSLIYHIFKKAGYNVGLAGNIGQSLALQV--- 146

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
               D D+ + EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I
Sbjct: 147 -AEKDYDYYVIELSSFQLDNM----YRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRI 201

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-M 272
            +  E+T       DD        K      K  +S  K +            ++  + +
Sbjct: 202 LQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEG------MIGYLADGQYVI 255

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E        +      G H   N L       I     +   ++L  F   E    R   
Sbjct: 256 EYPTPFNMEQESLALTGKHNMYNSLAAGITADIAGVKNEVIRQSLGDFEGVE---HRLEK 312

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +       I++S   N  +   A+  +           + +LG     G+   + +  +
Sbjct: 313 VVRVRGVDYINDSKATNVDACWYALESMKT-------PTVLILG-----GKDKGNDYEAI 360

Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AE++    +  V+L G     L D      I +  + +M             GD V++
Sbjct: 361 AELVRKKCVGLVFL-GADNRKLHDFFDSFGIPIADTHSMKDCVEACYRMARPGDTVLL 417


>gi|330832323|ref|YP_004401148.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
 gi|329306546|gb|AEB80962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
          Length = 449

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 131/352 (37%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A I+ ITGS GKTTT  M+   L++  K     G+         ++A+     D
Sbjct: 106 AYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGYP---ASSVAQTATAED 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   RPHIAV+T +  +H+      E+  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMG----TESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAED 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  ++ A    T+           ++      ++    ++  +G+ +
Sbjct: 219 FVVLNFNQKEAKELAEQTKA----TVVPLST-----LEVVDGAYLADG---KLYFKGEYI 266

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +L  D     ++LS F   +    R +        
Sbjct: 267 MDADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAFGGVK---HRLQFVGEINGV 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 324 SFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDLV------ 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     ++ A  ++  V   E   +        +    GD+V++
Sbjct: 371 GLKKMVILGQSAPRVQRAADKA-EVETIEALDIADATRKAFAIAEKGDIVLL 421


>gi|223933921|ref|ZP_03625882.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
 gi|223897398|gb|EEF63798.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
          Length = 447

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 131/352 (37%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A I+ ITGS GKTTT  M+   L++  K     G+         ++A+     D
Sbjct: 104 AYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGYP---ASSVAQTATAED 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   RPHIAV+T +  +H+      E+  +AK  I   +    
Sbjct: 161 TLVMELSSFQLMG----TESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAED 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  ++ A    T+           ++      ++    ++  +G+ +
Sbjct: 217 FVVLNFNQKEAKELAEQTKA----TVVPLST-----LEVVDGAYLADG---KLYFKGEYI 264

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +L  D     ++LS F   +    R +        
Sbjct: 265 MDADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAFGGVK---HRLQFVGEINGV 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S + N  + + A+S           + I + G   + G        DL       
Sbjct: 322 SFYNDSKSTNILATQKALSGFD------NSKVILIAGG-LDRGNEFDELVPDLV------ 368

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     ++ A  ++  V   E   +        +    GD+V++
Sbjct: 369 GLKKMVILGQSAPRVQRAADKA-EVETIEALDIADATRKAFAIAEKGDIVLL 419


>gi|189502458|ref|YP_001958175.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189497899|gb|ACE06446.1| hypothetical protein Aasi_1103 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 467

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 127/357 (35%), Gaps = 40/357 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +AI G+ GKTT+  +    L    +   A +G    +       +         + E  
Sbjct: 113 TLAIAGTHGKTTSTSLAAHVLCHANRNITAFLGGIAKNYNSNFIASSNTEQESSIVIEA- 171

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E       + P IA+ITT+ P HL  +   +       +    L K G   L++D
Sbjct: 172 ----DEFDRFFLKLHPDIAIITTVDPDHLDIYKDQDGFEEGFKQFLSRLPKQGIAILHHD 227

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVH 285
               + L           +  +   K++          SE          +     ++  
Sbjct: 228 --VAKRLIDDESYPTQAQVIQYAL-KDSPICADNI-YISETGRFCFDYISEKFVIRDIQL 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              GYH  +N L  +     +    +   +A+  F    G  +R+   + +     ID+ 
Sbjct: 284 PVPGYHNIENALAVITACLHIGIAPEIIREAIHTFQ---GIARRFDLIIQRNDLVFIDD- 339

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VL 396
           Y  +P  + A ++ + ++ P+   +++ V+    +    ++ F  ++A+         +L
Sbjct: 340 YGHHPVEITALLTTIRKLYPN---KKVTVIFRPNQ-YSRTKDFLQEIAQSLSLADCVLIL 395

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS--------SLVDGD 445
            +Y+   V + G +  A+   +  ++   Y+ T + L L +          +L  GD
Sbjct: 396 DIYSDREVPIEGINSEAILQHI--TLPYKYACTKEDLVLQLAQVDKLEVVVNLGAGD 450


>gi|114799440|ref|YP_759855.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739614|gb|ABI77739.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 469

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 132/408 (32%), Gaps = 49/408 (12%)

Query: 88  VDDVLGALN--------KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           V D+  AL            ++A   +  T I + G+ GK+TT  M+   L    K+   
Sbjct: 82  VPDIAAALRVGARRMSRAQMLSALFNAAPTAIGVAGTSGKSTTTGMIAWILHHAGKSPTV 141

Query: 140 I-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           + G+   +   P  L    +    GIF   +S + E         P +AV++ I+  H  
Sbjct: 142 MNGAVMKNFQTPDALFASSLVGASGIF---VSEVDESDGSIAGYNPRVAVVSNISLDH-- 196

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNAD 257
               ++E+ +         E   T+ LN D+     +             ++  ++  A 
Sbjct: 197 --KSMDELRALFGGFAARAE---TVVLNLDNDETARMAGDFPGA-----VTYSLENPAAR 246

Query: 258 FQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              +            V     G +  +     G H   N+L  +         +  A K
Sbjct: 247 LTAQNIAPAPTHITFSVHDQTSGATAPIRLATPGRHNVSNVLAAIAATLACGVTLAEAAK 306

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+ F    G  +R+     +G  T+ID+ +  NP  + A +  ++Q        R+ V+
Sbjct: 307 ALASF---AGISRRFDVIGTEGGVTVIDD-FGHNPDKIAATLRTVNQFPG-----RVLVM 357

Query: 376 GDMCEMGEL---SQSFHIDLAEVLSLYNI----SHVWLSGFHVLA------LKDALPRSI 422
                 G L    + F    AE L   +I       +  G    +        D      
Sbjct: 358 FQPHGFGPLRNMRREFAACFAENLDAEDILLMPEPAYFGGTVDRSVGSQDLAADIRALGR 417

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             H           +      GD ++V  +           LL  F A
Sbjct: 418 EAHALGDRAACGARLFELAKPGDRILVMGARDDTLTVFAQELLATFKA 465


>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
          Length = 889

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 136/393 (34%), Gaps = 34/393 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +LL   +   + +     V   G+  D+  +A  + +  + G    G   +  A ++
Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           GA  VV +  +          +  VDD+  AL  L      R      +I + G+ G TT
Sbjct: 283 GAVAVVADQTVDIEGTLACRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVTT 342

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLG 173
           T  ++     ++      +G    +      L   P                    +   
Sbjct: 343 TAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGAEAA 402

Query: 174 EIRFLTHL---------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGT 222
            +   T           +   IAV+T +  A        EE  ++ A +F  +   +   
Sbjct: 403 LLEVTTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPERHR 462

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD       A+         YSF ++K AD    K++    ++ + VQ     +E
Sbjct: 463 KVVNIDDPSAPFFAAQGGQDVPVVTYSF-ENKKADVHTLKYQLSLFETEVLVQTPHGILE 521

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L ++ +   + A ++  +K +       G   R      +  F +I
Sbjct: 522 ISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPG---RCELIDEEQAFGVI 578

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            + +   P S+   +  + ++ P    R + VL
Sbjct: 579 VD-HARTPESLSRLLDGVKELGP---RRIVTVL 607


>gi|114778007|ref|ZP_01452907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551613|gb|EAU54166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
          Length = 460

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 138/394 (35%), Gaps = 39/394 (9%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           R         A   P  DG   +  +V    G+  +    D      +  +P+  +    
Sbjct: 34  RDGQSGCIAVADANPIADG---VPDSVNLFVGSTYLDRVADYDVVFAAPGVPLAAISSRF 90

Query: 93  GALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            A  ++   A +         IA+TG+ GK+TT  ++   L +  K+   +G+       
Sbjct: 91  IATQRITSQADVLMCACAEKTIAVTGTKGKSTTSTIIHRMLQAAGKSSVLVGNIGKPAFD 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L         D  + EL    L  +        P++AV+  + P HL  +S ++    A
Sbjct: 151 ELEALE---QADVIVCELSSHQLTTVTR-----SPNVAVLLNLFPEHLDYYSSLDAYYQA 202

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F        + LN D      +   + A  ++    F      D QL  W    ++
Sbjct: 203 KTAVFRYQGPDDYLVLNADSPECREMTTTALAKKLQ----FSHD---DCQLDAW---FDE 252

Query: 270 SWMEVQLQGKSMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           S + +Q  G  +EV H     +G     N++  +   S +       I+         G 
Sbjct: 253 SSIHIQTDGGDIEVPHACCELLGAFNMYNVMAAILATSRMAVVNRAVIEQ--ALKGFTGL 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R          T I++S +  P +  AA+S               +LG       ++ 
Sbjct: 311 PDRMEYVSVVQGVTFINDSISTTPDTTCAALSAFEASVG------TLILGGQAR--PVAT 362

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +  LA ++ LY + H+     +  A++D L R
Sbjct: 363 ERYERLAAMIRLYGVQHLIFLPQNGPAMRDILQR 396


>gi|19704790|ref|NP_604352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19715127|gb|AAL95651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 454

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 132/352 (37%), Gaps = 47/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+         G+    +     +     D+DF   E
Sbjct: 112 KTKIIAITGTNGKSTTTAKISDMLNHAGYKATYAGNIGRSLSE---VLLKEKDLDFISLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P I++I  I P H+  +   +E  + K  I +   +      N
Sbjct: 169 LSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIEN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E ++ ++  +  K I S  K K AD  +   K   ++                 
Sbjct: 225 IDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVENDKIYHDKDD-------IIDVDKLS 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L  +    IL  D +   + L +  P E    R     N G    I++S 
Sbjct: 274 LKGIHNLENTLFMVATAEILKLDREKLKEFLMIATPLE---HRTELFFNYGKLKFINDSK 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S K AI              I + G   +  +L+      LAE++   NI  V+L
Sbjct: 331 ATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEVYL 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
            G     +++ L +   V Y +      + I++SL D          +V+++
Sbjct: 377 IGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMRKRFTKDSDEVILL 425


>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           parapertussis 12822]
 gi|62900578|sp|Q7W4B2|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
          Length = 508

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 119/385 (30%), Gaps = 53/385 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A     +A     +  ++AITG+ GKTT   +    + +   +    G+ +      L
Sbjct: 115 LFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAAL 174

Query: 152 TLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A    D+    + EL    L      T  + P  AV+  +   HL     ++  A AK
Sbjct: 175 IDALDQDDLPQVWVLELSSFQL----ETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAK 230

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A I   L+      +N DD     +     AL ++   SFG+   A       +     +
Sbjct: 231 ARI---LKPARLAIVNRDDPLTVAMVESLQALNVR---SFGRDVPALVGDMGLELGQGVA 284

Query: 271 WMEV--------------------QLQGKSMEVVHHG-----IGYHMAQNMLMTLGIVSI 305
           W+                         G  M  +         G H A N L  + +   
Sbjct: 285 WLTACESNDFDEPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARS 344

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L       ++         G   R     + G    I++S   N  +  AA+  L Q   
Sbjct: 345 LDLGWGPMLRT---LRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGLGQ--- 398

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHV 424
               + + + G   +  + S          +   +   V L G    A+   L P  +  
Sbjct: 399 ----QVVLIAGGQGKGQDFSP------LVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPC 448

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
             +  M             GD V++
Sbjct: 449 VAAADMREAVRRAAELAQPGDAVLL 473


>gi|171780269|ref|ZP_02921173.1| hypothetical protein STRINF_02057 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281617|gb|EDT47052.1| hypothetical protein STRINF_02057 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 443

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 127/386 (32%), Gaps = 50/386 (12%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V +                + T   + G+ GKT+T  ++   L +I  T   IG    
Sbjct: 81  YAVKNGFKFKRYHEFLGDFMRQFTSFGVAGAHGKTSTTGLMAHVLKNITDTSYLIGDG-- 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    R   + ++ +FE       E +       P  ++IT I   H   F  I++
Sbjct: 139 -------TGRGSANSNYFVFE-----SDEYQRHFMPYHPEYSIITNIDFDHPDYFKSIDD 186

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  A  +  + ++K   +FL  DD +   + + +       IY +G   + DF      +
Sbjct: 187 VFDAFNDYAKQVQK--ALFLFGDDPYLRKITSDAD------IYYYGFKDSDDFMAYDVVR 238

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+   + +        G H   N    +  + +   D++   + +  F   +
Sbjct: 239 TTNGSAFKVKHGEEELGSFHLPAFGRHNILNATAVIANLYVAGIDIELVAEHMKTFGGVK 298

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAV 374
               R          T+ID+ +  +P  + A +    Q            PH   R IA+
Sbjct: 299 ----RRFTEKVINNTTIIDD-FAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIAL 353

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           L +       + S +     +  +Y     V      V  L   + +S  V   E +  L
Sbjct: 354 LDEFANALNQADSVY-----LAPIYGSAREVDHGDVKVEDLVVKINKSAKVIILENVSPL 408

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYR 459
                    D  V V   +     Y 
Sbjct: 409 LDH------DNAVYVFMGAGDIQMYE 428


>gi|126700267|ref|YP_001089164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile 630]
 gi|255101821|ref|ZP_05330798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-63q42]
 gi|255307688|ref|ZP_05351859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile ATCC 43255]
 gi|118595649|sp|Q182Y7|MURD_CLOD6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115251704|emb|CAJ69539.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Clostridium difficile]
          Length = 451

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 127/359 (35%), Gaps = 35/359 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A +L +    I ITG+ GKTTT  ++    S  K+    +G+  N +   +   
Sbjct: 96  IGEVELAFKLSNNPIFIGITGTNGKTTTTSLVGEIFSRAKRDTYVVGNIGNPVIDTI--- 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +    + EL    L  I       RP ++ I  I   HL+    +E+   AKA IF
Sbjct: 153 ETSSEESVLVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKANIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWM 272
                     LNYDD   + L  K +A     +  F ++K  N    L       +    
Sbjct: 209 MNQTVEDFCVLNYDDEIVKSLADKCNA----KVIYFSRTKKVNGGVYLENNDIIIDIDDK 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L    +       G H  +N +  + I  +   D++     L  F   E    R   
Sbjct: 265 IKFLNKDDV----SLPGGHNLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVE---HRQEF 317

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N      +++S   NP S   AI          +   I + G M    +   +F  +L
Sbjct: 318 VRNLDNVIYVNDSKGTNPDSTIKAIQS-------YDRPIILIAGGM----DKGSNF-DEL 365

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E    Y +  + L G     +++         +H  + M+            GD+V++
Sbjct: 366 LETAKSY-VKSLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|110598577|ref|ZP_01386845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339811|gb|EAT58318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 465

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 123/353 (34%), Gaps = 31/353 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +A ++ ITG+ GKTTT  ++     +      Y      N  I     +  M    D  +
Sbjct: 104 RARVVGITGTDGKTTTATLIHRICEADGLLHNYRAFSVGNIGIPFSSMVLEMHPR-DVAV 162

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTI 223
            EL    L          RP IAVIT I P HL+     +   A+AK  I++   +  T+
Sbjct: 163 VELSSYQL----ERCVAFRPDIAVITNITPDHLARYEGDMHRYAAAKFRIYQNQGERDTL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRKWKQCSEQSWMEVQL 276
             N DD       A   A     I  F   + A          L   +        E  +
Sbjct: 219 IYNDDDPLLTAHFAVDSARFPFQIVPFRMDQRAAHGSGRSMVFLDNDRVVFRTVSGEETV 278

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +     G H   N+L  + +  +L  +       LS F   E R +        
Sbjct: 279 VATADFLKESFRGRHNIYNVLAAVAVSKVLGIESGVVRDVLSDFTGVEHRQEFVMTINGS 338

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G    I++S   N  +M+ A+           G+ + + G     G+   + +  +A ++
Sbjct: 339 G---WINDSKATNLNAMRQALESA-------PGKVVLIAG-----GQDKGNDYATIAGLV 383

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ +   G     L  A    + V  +E++       + ++  G+ V+ 
Sbjct: 384 RT-KVTLIVAIGESKEKLVSAFEGVVPVRPAESLQAAVTMARHAVERGESVLF 435


>gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 295

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 99/278 (35%), Gaps = 27/278 (9%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L          
Sbjct: 1   MAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGRELAGIKQES--- 56

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + ++ +   +A    R  K   +     +        +    +G     N+L  +G + 
Sbjct: 57  RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALL 116

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K L       GR +R           L+   Y   P +++  +  L    
Sbjct: 117 GLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTPDALEKVLEALR--- 169

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LK 415
           PH +GR + + G   +     +    ++ E L+      VW++  +  +         ++
Sbjct: 170 PHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLA----DGVWVTDDNPRSELPASIFDDIR 225

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   V + E        + +S    DVVV+  K 
Sbjct: 226 PGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKG 263


>gi|290579918|ref|YP_003484310.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           NN2025]
 gi|44888211|sp|Q8DSP4|MURC_STRMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24378099|gb|AAN59364.1|AE015001_9 putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           UA159]
 gi|254996817|dbj|BAH87418.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           NN2025]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 130/374 (34%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T + + G+ GKT+T  +L   L +I  T   IG             R  
Sbjct: 102 HEFLGEFMNQFTSLGVAGAHGKTSTTGLLAHVLKNITDTSYLIGDG---------TGRGL 152

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+G++++ +A  +  + +
Sbjct: 153 ANSQYFVFE-----SDEYERHFMPYHPEYSIITNIDFDHPDYFTGVDDVFAAFNDYAKQV 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D +   L + +       IY +G   N DF      + +  S  +V+  
Sbjct: 208 KKG--LFVYGEDPYLRKLTSSA------PIYYYGFKDNDDFVAYDIMRSTNGSDFKVRHG 259

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +   H    G H   N    +  + I   ++D   + L  F   +    R       
Sbjct: 260 QNELGSFHVPAFGRHNVLNATAVIANLYIAGVEMDLVRQHLKTFSGVK----RRFSEKLI 315

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+ID+ +  +P  + A +    Q            PH   R IA+L +  +    + 
Sbjct: 316 NDVTIIDD-FAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQALNEAD 374

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +  LA++  S   + H       V  L D + +   V   + +  L            
Sbjct: 375 SVY--LAQIYGSAREVDH---GDVKVEDLADKIVKPAKVITVDNVSPLLDH------HNA 423

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 424 VYVFMGAGDIQLYE 437


>gi|325677954|ref|ZP_08157596.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
 gi|324110508|gb|EGC04682.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
          Length = 477

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 126/365 (34%), Gaps = 47/365 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  MLT       +  +C IG     IG      +    V         
Sbjct: 117 LCVCGTHGKTTTSSMLTEIFVDAGEDISCVIGGKLPSIGGSGRAGKSDSMVCEA------ 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E +     + P +A+I  +   HL  F  IE I  +     +    T  +  N DD
Sbjct: 171 ---CEYQDHFLKLFPDVAIILNVDADHLEYFKNIENIIKSFHTFADM--ATKAVIFNGDD 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGI 288
           +           +  K + SFG  +  D+      +    +   V  +G+ + E+  +  
Sbjct: 226 ANTRK---SLEGISGKELISFGWDRKNDYSAEIISKQGLVTKFRVFFKGEPAAEMEINVP 282

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  +          + A K L+ FH   G  +R++     G  T++D+ Y  
Sbjct: 283 GDHNVVNALAAIAAARYSGLSFEDAAKGLAAFH---GAIRRFQLIDKVGGITIVDD-YAH 338

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LS 407
           +PA +   +     +  +   R  AV          ++    D A  L + +IS +  + 
Sbjct: 339 HPAEIAVTLKAAKGLDFN---RVWAVFQPF--TYSRTEILMDDFARALEIADISVITDIM 393

Query: 408 G-----FHVLALKDALPRSIHVHYS----------------ETMDGLFLFIQSSLVDGDV 446
           G      H +  +    ++ +  +                 +  D    +I  +   GD+
Sbjct: 394 GSREKNEHGIYTEMLGAKTKNAVWFNTPHHVVDKQTAEQKEKNFDECIDYIIKNKQQGDI 453

Query: 447 VVVKS 451
           V+   
Sbjct: 454 VITLG 458


>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Lens]
 gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Lens]
          Length = 447

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 139/370 (37%), Gaps = 33/370 (8%)

Query: 84  PVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV       GAL    +   AR    A +IAITG+ GK+T   ++     +     A  G
Sbjct: 80  PVLESARQAGALIYGDIECLARE-ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAG 138

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +    +   L +       D  + EL    L     LT+ + P +A I  + P HL    
Sbjct: 139 NIGTPV---LDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHH 191

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E    AK  I+ G +    +  N +D +                 SFGK   +   + 
Sbjct: 192 TMEAYTQAKQRIYRGAKA---VLFNREDVYT---VPHQSCQADIKCISFGKDAPS---MG 242

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
            W    +++ + +    + +  V   +  G H   N L    +       +   +  L  
Sbjct: 243 NWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKT 302

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R +  R     G    I++S   N   + A IS ++ I    +G+ + + G   
Sbjct: 303 FPGLPHRCQWVREVDGVG---WINDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +  +       +LA+ +S + +  + L G     ++ AL + + V  + +++G     ++
Sbjct: 357 KGADF-----QELAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410

Query: 440 SLVDGDVVVV 449
               GDVV++
Sbjct: 411 CAKPGDVVLL 420


>gi|156973219|ref|YP_001444126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           harveyi ATCC BAA-1116]
 gi|166224769|sp|A7MXR3|MURD_VIBHB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156524813|gb|ABU69899.1| hypothetical protein VIBHAR_00900 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +   T    G+          L  +  D D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMAKAAGLTVGVGGNIGVP-----ALDLLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N
Sbjct: 162 LSSFQL----ESTLSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDNAE---LAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++       + +FG  +    Q    +    ++W+    Q         
Sbjct: 215 RDD-------QETFPDTETPLVTFGSDE----QAYGLEADGNRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   ++ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAADVDYHKSLNA---LKTYTGLTHRCQVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTIAALSGLEST-----GKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       + +P        +TM+ +   I S L  GD+V++
Sbjct: 370 FGADGD---EFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409


>gi|145637113|ref|ZP_01792776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
 gi|145269767|gb|EDK09707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
          Length = 437

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 137/346 (39%), Gaps = 43/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GK+T   ++     +        G+          L+ +  D +  + E
Sbjct: 104 TKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-----ALSLLNEDCELYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  +   H+  +  +E+   AK  I+          LN
Sbjct: 159 LSSFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN---AKVGVLN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            +D     L    +    K   SF ++ +AD+ L+   +  +Q  M   EV L  +    
Sbjct: 212 NED----RLTFGENENQAKHTVSFAEN-SADYWLK--TENGKQYLMVKDEVILPCEEAT- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L  + +   +  ++D+   AL  F   +G   R++          I+
Sbjct: 264 ---LVGRHNYMNILAAIALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     + EG+   +LG   +  + S     +LAE+++  +I  
Sbjct: 318 DSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-I 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G     L     +S   +  ETM     F++ +L  GD+V++
Sbjct: 367 CYCFGRDGALLAKFSSQS---YLFETMKQAIEFLRPTLQSGDMVLL 409


>gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
 gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
          Length = 471

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 152/425 (35%), Gaps = 48/425 (11%)

Query: 34  SRSIAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           SR I P EA F   +K   + G D I  A+  G   V V   +V +     +PV G  ++
Sbjct: 47  SR-IVPGEAIFCGPLKEELFQGIDAI--AISPG---VAVAEPLVQAALQQGVPVIGDIEL 100

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                             I+AITGS GKTT   M+   + +        G+        L
Sbjct: 101 FAVALDQYA----PPGTKILAITGSNGKTTVTSMVGEMVKNAGWDVEVAGNIGPAALDAL 156

Query: 152 TLARMPVDVDF--GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            + RM  +        EL    L      T  +RP  A +  ++  HL  +  IEE A+A
Sbjct: 157 -MQRMDANKWPHLWALELSSFQL----ETTSSLRPDAATVLNLSEDHLDRYDSIEEYAAA 211

Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           KA IF      G +  LN DD+    +  K+         +FG S  A     ++     
Sbjct: 212 KARIFSRPHNNGCVQILNRDDARVYAMADKNSKQ-----VTFGLS--APVSDEEFGLLPG 264

Query: 269 QSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S + +  QG +           G H A N L  L +   +    +  + AL  F    G
Sbjct: 265 GSDVWL-AQGSTHLLKTSELAVAGLHNAANALAALALCRAVDLPFEPLLHALRTF---RG 320

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R +        T  D+S + N  S  AA++   +         I + G   +  + S
Sbjct: 321 LPHRMQKVAEFNGVTFYDDSKSTNIGSAVAALNGFRK-------NVILIAGGDGKGQDFS 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
                   E     ++  V L G     +  A+  S + +H   TMD            G
Sbjct: 374 P------LEQPVSKHVRSVVLLGRDADKVAQAIQASNVPIHRVTTMDEAVQVSFLLAEHG 427

Query: 445 DVVVV 449
           DVV++
Sbjct: 428 DVVLL 432


>gi|85707193|ref|ZP_01038279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
 gi|85668247|gb|EAQ23122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
          Length = 465

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 123/407 (30%), Gaps = 45/407 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPV------FGVDDVLGALNKLAV---AARLRSKA 108
             A+ + A L+V             + V        VD+ +G   +              
Sbjct: 61  AGALDRVASLIVSPGIPHLYPAPNRVIVAAQAAGVPVDNDIGLFFRSLATDDWGGFDVTP 120

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IA+TGS GK+TT  ++   L    +T    G+    +         P D    + EL 
Sbjct: 121 KVIAVTGSNGKSTTSALIHHVLVEAGRTAQLAGNIGRGVLDIDP----PEDGGVVVLELS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                  R LT    P +AV T  +P HL   +G+    +AK  +F          +  D
Sbjct: 177 SYQTDLARALT----PDVAVFTNFSPDHLDRHAGLGGYFAAKRRLFAEGGPD-RAVIGVD 231

Query: 229 DSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           +   + L  + +       +               W   + + ++     G+      + 
Sbjct: 232 EPEGQYLAGQMAEGPNDDRVIRISVDHK--LTGSGWSVFARKGFLSEYRHGRQVGSIDLR 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V    G H  QN          L           +  H   G   R +    +     +
Sbjct: 290 GVKGLPGSHNHQNACAAYAACRTLGLAPRVI---EAGLHSYAGLPHRSQRVAEKDGIIFV 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S   A+     I          + G + + G L+            L ++ 
Sbjct: 347 NDSKATNVDSALKALQAFENIRW--------ICGGLEKDGGLA-------GLAPGLAHVR 391

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++ G        AL  ++      TM        S    GDVV++
Sbjct: 392 KAYVIGREAAGFARAL-GTVESEVCTTMAKAVASAMSDAESGDVVLL 437


>gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
 gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 113/379 (29%), Gaps = 37/379 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV     +                  IIAITGS GK+TT  ++   L    + 
Sbjct: 89  AAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAITGSNGKSTTSALVHHILKHAGRP 148

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G+    +          +D +  + EL        R LT    P +AV T ++P H
Sbjct: 149 TQLAGNIGRGVLDI----EPAIDGEVVVLELSSYQTDLARNLT----PDVAVFTNLSPDH 200

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKN 255
           L   +G+    +AK  +F          +  D+     L  + S       +      + 
Sbjct: 201 LDRHAGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGRFLAGQLSEGAADDRVIRVSVDRK 259

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  W+  + + ++     GK      +  +    G H  QN          L    
Sbjct: 260 --LTGLGWQVFARKGFLSEYRGGKQIGSIDLRSITGLPGAHNHQNACAAYAACRTLGFAP 317

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  + FH   G   R +     G    +++S   N  S   A++    I     G 
Sbjct: 318 KII---EAAFHSFGGLPHRSQTVGEAGGVRFVNDSKATNVDSAVKALAAFRNIRWICGG- 373

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                          +     L+E L    +   ++ G        A+   +      TM
Sbjct: 374 ------------LEKEGGLGSLSEPLET--VRKAYVIGREAAQF--AMKLGVEAEVCGTM 417

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           D            GDVV++
Sbjct: 418 DIAVARAVEDAEAGDVVLL 436


>gi|157164782|ref|YP_001467685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter concisus 13826]
 gi|112800816|gb|EAT98160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter
           concisus 13826]
          Length = 427

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 137/450 (30%), Gaps = 86/450 (19%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DS        F            F+ HA + GA ++                     
Sbjct: 10  ITDDSNECEQGAYFV----QTTANAKFVEHAAKNGAKII--------------------- 44

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                L +     ++     I+ ITG+ GKTTT   +   L ++ K     G+    I  
Sbjct: 45  ----TLEECKKLLKIDENLKIVGITGTNGKTTTAAAIYETLRNLGKKCGLSGTRGAFIEG 100

Query: 150 PLT-----------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                                A      ++ + E+    + + R     +   + + T +
Sbjct: 101 EQIDDKALTTSAILKTLSYLKAASEQGCEYFVMEVSSHAIAQKRI--ESLNFALKIFTNL 158

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +EE A  K+  F+         +N DD   +           K  Y++  
Sbjct: 159 TQDHLDYHKSMEEYARVKSSFFD---DESVKLINIDDGGVKF--------NPKNAYTYAI 207

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            K A F         +     ++     +E+     G     N++  LG V +L      
Sbjct: 208 KKPASF-APIVYGLKDGIDAVIKTPNGDVEIDSSLQGEFNLYNLIAALGAVCLLERPDAA 266

Query: 313 AI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           A+ KA+S F    GR +            L+   +   P  ++  ++ L  ++       
Sbjct: 267 ALSKAISKFKGVSGRMEVVSTD------PLVIVDFAHTPDGIEKVLNSLRHLN------L 314

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIH 423
           IAV G     G+  ++    +  +   Y    +  S           +  +   + ++ +
Sbjct: 315 IAVFGA---GGDRDRTKRPKMGAIAQKYARICIVTSDNPRSEEPESIIDEICAGMSQNEN 371

Query: 424 VHYSETMDGLFLFIQSSLVDGD--VVVVKS 451
           +  +           S L  G   V++ K 
Sbjct: 372 LIRNANRKEAIALAISKLEPGWALVILGKG 401


>gi|254976246|ref|ZP_05272718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-66c26]
 gi|255093633|ref|ZP_05323111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CIP 107932]
 gi|255315381|ref|ZP_05356964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-76w55]
 gi|255518046|ref|ZP_05385722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-97b34]
 gi|255651162|ref|ZP_05398064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-37x79]
 gi|260684228|ref|YP_003215513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
 gi|306521010|ref|ZP_07407357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-32g58]
 gi|260210391|emb|CBA64782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
          Length = 451

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 127/359 (35%), Gaps = 35/359 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A +L +    I ITG+ GKTTT  ++    S  K+    +G+  N +   +   
Sbjct: 96  IGEVELAFKLSNNPIFIGITGTNGKTTTTSLVGEIFSRAKRDTYVVGNIGNPVIDTI--- 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +    + EL    L  I       RP ++ I  I   HL+    +E+   AKA IF
Sbjct: 153 ETSSEESVLVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKANIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWM 272
                     LNYDD   + L  K +A     +  F ++K  N    L       +    
Sbjct: 209 MNQTVEDFCVLNYDDEVVKSLADKCNA----KVIYFSRTKKVNGGVYLENNDIIIDIDDK 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L    +       G H  +N +  + I  +   D++     L  F   E    R   
Sbjct: 265 IKFLNKDDV----SLPGGHNLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVE---HRQEF 317

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N      +++S   NP S   AI          +   I + G M    +   +F  +L
Sbjct: 318 VRNLDNVIYVNDSKGTNPDSTIKAIQS-------YDRPIILIAGGM----DKGSNF-DEL 365

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E    Y +  + L G     +++         +H  + M+            GD+V++
Sbjct: 366 LETAKSY-VKSLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/484 (15%), Positives = 156/484 (32%), Gaps = 63/484 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL A              + +  D+R +  Q  F           +++  A   G 
Sbjct: 7   TIEQLLTAHHLLVAKPDSDQTFDFLHYDTRQVKDQTLFVVKGAFRV---EYLAQAT--GV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
             +V        +  + +P + V DV  AL+ L++A     ++   I A TG+ GKTT  
Sbjct: 62  TGLVTE-----ELLPVDLPQWQVTDVQKALSVLSMAFFDYPQNDLWIGAFTGTKGKTTAA 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGI------F 165
            M    L  +   +  + S  + I       +            +  D+   +       
Sbjct: 117 YMAFQILQHMTNQHTALFSTVDRITGNQPADKKKSDLTTPESYELFKDMRRAVDNGMTHL 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
            + +S    ++   + +   +     I+P H+        E+  + K  + +  E+   +
Sbjct: 177 VMEVSSQAYLKQRVYGLEFQVGAFLNISPDHIGPNEHPSFEDYLAHKMMLLDHAEQ---V 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEV---QLQGK 279
            +N        + A +       +Y++ +  +  ++  +  +    +S   V    L   
Sbjct: 234 IVNAASDQLSAVLAHAKTHHD-HVYTYSQTDQGGEYTYQSLESAIHESRFTVAESDLAEM 292

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +     +  G     N L  L + ++  A        ++        G+     +     
Sbjct: 293 NGTYRLNLPGDFNESNALAALIMTALAGA---QHADMVAGLDTVFIPGRMLSLPIPDHGV 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N ASM+A +       P  +G+   V+G     G    S   D   V+S +
Sbjct: 350 AFVD--YAHNYASMRALLQFAQSQYP--DGKVSVVIGAP---GNKGVSRRADFGRVVSEF 402

Query: 400 NISHVWLSGFHVL-----ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L+          A+   +   I      VH+            +     D+V+V
Sbjct: 403 -ADTVFLTADDPQFESPMAIAKEIAAHITNPDVTVHFEMDRIQAIQQAIAQANPHDIVIV 461

Query: 450 --KS 451
             K 
Sbjct: 462 AGKG 465


>gi|116491263|ref|YP_810807.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
 gi|122276555|sp|Q04EI0|MURC_OENOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116091988|gb|ABJ57142.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
          Length = 435

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 142/424 (33%), Gaps = 49/424 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           DF    ++    +V        +       V     V   L     A     +    IA+
Sbjct: 52  DFDPDLIKSNYVVV-----KGNAFSDDHPQVLAAKKVGAKLLTYPQAVEEVIRRHFSIAV 106

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +G+ GKT+T  +L   LS+ + T   IG           + +      + + E       
Sbjct: 107 SGAHGKTSTTSLLAHILSNFESTSYLIGDG---------VGKGVFSSKYFVVEA-----D 152

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E         P +A+IT I   H   +  ++++ SA +E  + ++K   IF   +D   +
Sbjct: 153 EYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGEDPEIK 210

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292
            +K K+       I S+G  K+  F      + +E S+  +   G+ +      I G H 
Sbjct: 211 KIKPKTA-----RILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATIEGDHG 265

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             +    + +   L   VD   K L  +   + R    + A        I + Y  +P  
Sbjct: 266 ILDTTAAIAVADYLGFSVDQIQKGLLTYQGAKRRFNISQVAD-----LTIVDDYAHHPTE 320

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +KA I    Q       R +AV            +F  +    L   +   V+++     
Sbjct: 321 IKATIDAARQ--KFPNKRLVAVF--QPHTYTRVNAFKDEYVNALK--SADKVYIT-PIFG 373

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDVVVVKSSNSCGFYRLINLLL 465
           +L++    +      + +      I         S   G V+V   +      +  + L 
Sbjct: 374 SLREKAGNAKSEDILDKLPNAGAIISESNAYDKLSAEHGSVLVFMGAGDI--EKYEDALK 431

Query: 466 EEFP 469
           + F 
Sbjct: 432 KGFE 435


>gi|332288554|ref|YP_004419406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
 gi|330431450|gb|AEC16509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
          Length = 440

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 133/347 (38%), Gaps = 39/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++     +        G+          L+ +       
Sbjct: 104 READAPIVAITGSNGKSTVTTLVYEMAKAADLNVGIGGNIGIP-----ALSLLGKGCQLY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ +    A I  I+  H++ +  +EE   AK  I+   E   TI
Sbjct: 159 VLELSSFQL----ETTYSLNAAAATILNISEDHMNRYDDMEEYRQAKLRIYRHAE---TI 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSME 282
            +N +D          +      + SF + K+AD+ L++ W      +   + L  + M+
Sbjct: 212 VVNNED----RATYPDYREPQHRLLSFAE-KHADYYLQEMWGHTYLATDSRLLLDVEKMK 266

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG H   N L  + +   +       I A        G   R++    +     +
Sbjct: 267 ----LIGRHNYMNALAAIALAQAVKIPQQGIIDA---LQSFAGLDHRFQTVHYENGVRWV 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L        G    +LG     G+  ++   DL  +++  NI 
Sbjct: 320 NDSKATNVGSTEAALNGL-----QVAGNLYLLLG-----GDGKKADFSDLKPLINKSNI- 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G   L L +   +S+     +TM+     I+  L  GD+V++
Sbjct: 369 FCYCFGQDKLPLAELSSQSV---VVDTMEQAIEQIRPKLKAGDMVLL 412


>gi|332522873|ref|ZP_08399125.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314137|gb|EGJ27122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 452

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 128/352 (36%), Gaps = 40/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L S+A IIAITGS GKTTT  M+   L+   ++    G+    IG P +   +  +  
Sbjct: 106 AYLVSEAPIIAITGSNGKTTTTTMIADVLNHGGQSALLAGN----IGYPASEVALKAEAK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  ++       P IA+IT + P HL     +EE  +AK  I + + + 
Sbjct: 162 DRLVMELSSFQLMGVK----AFHPQIALITNLMPTHLDYHGSLEEYVAAKWNIQQRMTEE 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279
             + LN D      L +K+ A     +  F   K  +   L+  K      ++       
Sbjct: 218 DYVILNADQELTSTLASKTKA----KVLYFSTKKEVEGAYLKGGKLYYNGDFIM------ 267

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L T+ +  +           L  F   +    R + A      
Sbjct: 268 -EASSIGVPGLHNVENALATIVVAKLSHIANPVISDTLKHFGGVK---HRLQYAGQLQDI 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S + N  + + A+S  +      +   I + G   + G        D+       
Sbjct: 324 TFYNDSKSTNILACQKALSGFN------KKNLILIAGG-LDRGNSFDELVPDI------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
            I  + L G     +K        V Y  ++ +             GD++++
Sbjct: 371 GIKKMILIGETTDKMK-LAAEMAEVSYSSAKDVADATRLAFKGANAGDIILL 421


>gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 444

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 119/367 (32%), Gaps = 31/367 (8%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V +    +      A   + A +I ITGS GKTTT  ++              G+  
Sbjct: 80  VLKVKEAGIPIISEIEFAGRYTHAKMICITGSNGKTTTTSLIYHIFKKAGYNVGLAGNIG 139

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGI 203
             + + +       D D+ + EL    L  +    +  R +IAV+  I P HL  +   +
Sbjct: 140 QSLALQV----AEKDYDYYVIELSSFQLDNM----YRFRANIAVLLNITPDHLDRYDHCM 191

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +    AK  I +  E+T       DD        K      K  +S  K +         
Sbjct: 192 QNYVDAKMRILQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEG------MI 245

Query: 264 KQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
              ++  + +E        +      G H   N L       I     +   ++LS F  
Sbjct: 246 GYLADGQYVIEYPTPFNMEQESLALTGKHNMYNSLAAGITADIAGVKNEVIRQSLSDFEG 305

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R    +       I++S   N  +   A+  +           + +LG     G
Sbjct: 306 VE---HRLEKVVRVRGVDYINDSKATNVDACWYALESMKT-------PTVLILG-----G 350

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +   + +  +AE++    +  V+L   +           I +  + +M            
Sbjct: 351 KDKGNDYEAIAELVRKKCVGLVFLGADNGKLHAFFDSFGIPIADTHSMKDCVEACYRMAR 410

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 411 PGDTVLL 417


>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis Tohama I]
 gi|62900577|sp|Q7VUQ1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
           Tohama I]
 gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis CS]
          Length = 510

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 119/387 (30%), Gaps = 55/387 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A     +A     +  ++AITG+ GKTT   +    + +   +    G+ +      L
Sbjct: 115 LFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAAL 174

Query: 152 TLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A    D+    + EL    L      T  + P  AV+  +   HL     ++  A AK
Sbjct: 175 MDALDQDDLPQVWVLELSSFQL----ETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAK 230

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A I   L+      +N DD     +     AL ++   SFG+   A       +     +
Sbjct: 231 ARI---LKPARLAIVNRDDPLAVAMVESLQALNVR---SFGRDVPALVGDMGLELGQGVA 284

Query: 271 WMEV----------------------QLQGKSMEVVHHG-----IGYHMAQNMLMTLGIV 303
           W+                           G  M  +         G H A N L  + + 
Sbjct: 285 WLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLA 344

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       ++         G   R     + G    I++S   N  +  AA+  L Q 
Sbjct: 345 RSLDLGWGPMLRT---LRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGLGQ- 400

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSI 422
                 + + + G   +  + S          +   +   V L G    A+   L P  +
Sbjct: 401 ------QVVLIAGGQGKGQDFSP------LVPVVRRHARAVVLIGVDGAAIGKVLEPTGV 448

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  M             GD V++
Sbjct: 449 PCAAAADMREAVRRAAELAQPGDAVLL 475


>gi|78187954|ref|YP_375997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium luteolum
           DSM 273]
 gi|122063253|sp|Q3B127|MURD_PELLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78167856|gb|ABB24954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           luteolum DSM 273]
          Length = 460

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 126/354 (35%), Gaps = 40/354 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIF 165
           +A I  ITG+ GKTTT  ++     ++ +          +IGVP +       + D  + 
Sbjct: 107 RARIAGITGTDGKTTTATLVQRMAEAVGRLGGYRAYGVGNIGVPFSSKVEEMEERDIAVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L          RP  A+IT I P HL  +   I   A AK  I   L  +GT+ 
Sbjct: 167 ELSSYQL----ERCSSFRPEAALITNITPDHLDRYGGDIMRYADAKYRIAMNLGSSGTLV 222

Query: 225 LNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRK--WKQCSEQSWMEVQ 275
            N DD    +L+A+    G++       T    G   ++   L          +     +
Sbjct: 223 YNADDP---ILRARFSVGGLQFSTVPFSTAGPVGGDPSSGIYLEDGWVHAGLRRLIHTSE 279

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            Q  S        G H   N+L  +G+   L  D    ++AL  F   E    R     +
Sbjct: 280 FQKGSFR------GNHNNSNVLGAIGLARALRLDEKAVLQALREFPGVE---HRQEFVAS 330

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     I++S   N  +M+ A+  +        GR + + G     G    + +  +A +
Sbjct: 331 KRGSDWINDSKATNVNAMRQALEAV-------PGRIVLIAG-----GRDKGNDYSAVATL 378

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +       V   G     + DA    + V  + T++            G  V+ 
Sbjct: 379 VRE-KADLVVAMGESRQKVADAFRADVAVVEAATLEDAVRLAAGGAGTGRTVLF 431


>gi|329890779|ref|ZP_08269122.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846080|gb|EGF95644.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
          Length = 493

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 131/414 (31%), Gaps = 49/414 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             ++P  G    +GAL K     ++    +  T I + G+ GK+T   M+   L    +T
Sbjct: 104 EDTVPDIGAAKRVGALIKTRPQLLSELFNAAPTSIGVAGTSGKSTITGMIAWILDQAGRT 163

Query: 137 YACIGSYNN-------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
              +            H      +     +    + E+  S     R+      P +AV+
Sbjct: 164 PTVVNGAVMKNFADADHPFASALIGGANDENGLFVAEVDESDGSIARY-----DPTVAVV 218

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           + I+  H      +EE+               T  LN D+     L   +  L      +
Sbjct: 219 SNISLDH----KSMEELRDLFGGFVGRAT---TAVLNLDNPETAAL---AQTLETGKAIT 268

Query: 250 FGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILT 307
           F   +  AD      +        E +++G++      +  G H   N L  LG V  L 
Sbjct: 269 FALGEEEADLSAHDLQPLPTGMTFEFRVRGEAARAARLNVPGAHNVANALAALGAVKALG 328

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D A+ AL  F    G  +R      +   T+ID+ +  NP  + A +  L       
Sbjct: 329 VGMDQAVAALETFS---GIRRRLEVVGARNGVTVIDD-FAHNPDKIAATLKTLHAFDG-- 382

Query: 368 EGRRIAVLGDMCEMGEL---SQSFHIDLAEVLSLYNI----SHVWLSG-----FHVLALK 415
              R+ +L      G L    + F    A ++   ++      V+  G          + 
Sbjct: 383 ---RLLILFQPHGFGPLKLMQREFIEGFAGLMRHDDVLLMPEPVYYGGTTDRSVGSEDIA 439

Query: 416 DALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +  +        T       I      GD +VV  +           LL   
Sbjct: 440 VGVRAAGRQAQALATRADCGDRIVEIAQPGDRIVVMGARDDSLSTFAAELLARL 493


>gi|221065136|ref|ZP_03541241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
 gi|220710159|gb|EED65527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 153/460 (33%), Gaps = 72/460 (15%)

Query: 33  DSRSIAPQEAFFA-----IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           D+R + P   + +     + G  +    F   A+  G  L  V      S  S+  PVF 
Sbjct: 163 DTREVPP---YLSALQTELPGVRFVAGAFTA-ALVDGQSLSSVYRSPGLSPASV-APVFN 217

Query: 88  VDDVLG------------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               +G            AL  L  A        ++ ITG+ GKTT   +    L     
Sbjct: 218 AARSIGLPTGGELDLFAFALKGLREAHG--YAPKVLGITGTNGKTTVTSLTGQLLEHGGL 275

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           +    G+    +   L+  R+  +      + EL    L + R       P  A +  I 
Sbjct: 276 SVGVAGNIGPTLLDTLS-GRIDAETLPQAWVLELSSFQLDDCR----GFEPTAATVLNIT 330

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI------ 247
             HL    G++  A AKA +F    +   + LN +D     +     A+  K        
Sbjct: 331 QDHLDWHGGMQAYADAKAHVF---GEQALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRA 387

Query: 248 -YSFGKS---KNADFQLRKWKQCS---EQSWMEVQLQGKSMEVVH----------HGIGY 290
             +FG     +  DF L      +        +   +GK+++ +H             G 
Sbjct: 388 HVTFGGDMPRRPGDFGLEVVNGMTWLVRAHEADETSKGKNVDDLHIVRLMPADALRIRGR 447

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N L  L + +     +   +          G   R +     G     D+S   N 
Sbjct: 448 HNAINALSALALATGAGCTLAPLLYG---LREYRGEPHRVQPVGRVGDVEYFDDSKGTNV 504

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  AA+     +    + R + +LG + +  + +      LA  +S Y +    L G  
Sbjct: 505 GATVAAL-----MGLGPDHRIVVILGGLGKGQDFTP-----LAAPVSRY-VRAAVLIGQD 553

Query: 411 VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +++AL    + +  + TM             GD V++
Sbjct: 554 APQIREALGDTGVTLVDAATMQDAVQQAARLAHAGDAVLL 593


>gi|86152832|ref|ZP_01071037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843717|gb|EAQ60927.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 427

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 125/422 (29%), Gaps = 80/422 (18%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFQAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  ++     ++    + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--VQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAIVTNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            ++  +    +G     N+L+    V+ L    D      ++       G+  + A    
Sbjct: 232 NQTFHIDSPLLGLFNLYNLLVASACVNEL-VKPDLKDLEKAISEFGGVCGRVEQVAKG-- 288

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +   +   P  ++  +  L         + I V G   +  +  +     + E  +
Sbjct: 289 ----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 398 LYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              I     S           +  +     +   V   E              + D+VV+
Sbjct: 339 KIAI---ITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKENDDLVVI 395

Query: 450 KS 451
             
Sbjct: 396 LG 397


>gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS6180]
 gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS6180]
          Length = 481

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/454 (17%), Positives = 143/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +      + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMVFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       + +G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|319938679|ref|ZP_08013043.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus anginosus
           1_2_62CV]
 gi|319811729|gb|EFW07995.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus anginosus
           1_2_62CV]
          Length = 443

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 133/371 (35%), Gaps = 55/371 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML   LS+I  T   IG             R   +  +  FE    
Sbjct: 106 MGVAGAHGKTSTTGMLAHVLSNITDTSYLIGDG---------TGRGSANAKYFAFEA--- 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 154 --DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVSKG--LFVYGEDK 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               + A +       IY +G  +  DF      + +  S  +V   GK + E      G
Sbjct: 210 ELRRVTANA------PIYYYGFKEGNDFIAHDLLRSTTGSSFKVSFCGKELGEFKIPSFG 263

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    +G++     D+    + L+ F   +   +R+   +  G  T I + +  +
Sbjct: 264 RHNIMNATAVIGLLYTAGFDLTLVREHLATFGGVK---RRFTEKVVNG--TTIIDDFAHH 318

Query: 350 PASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SL 398
           P  + A +    Q            PH   R IA+L +  E    + + +  LA++  S 
Sbjct: 319 PTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVY--LAQIYGSA 376

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-- 456
             + H       V  L + + +   +   + +  L            V V   +      
Sbjct: 377 REVDH---GDVKVEDLAEKIIKKAEIITVDNVSPLLEH------PNAVYVFMGAGDIQTY 427

Query: 457 ---FYRLINLL 464
              F RL++ L
Sbjct: 428 EYSFERLLSNL 438


>gi|111115652|ref|YP_710270.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia afzelii PKo]
 gi|216263556|ref|ZP_03435551.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
 gi|123341262|sp|Q0SM34|MURC_BORAP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110890926|gb|ABH02094.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii PKo]
 gi|215980400|gb|EEC21221.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
          Length = 468

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 145/395 (36%), Gaps = 45/395 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +VLG L++             + I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYSEVLGELSRKYY---------SVGIAGSHGKTTTTAFLGLLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +                  GI  + ++   E +       P++ ++T I   H
Sbjct: 143 PNVIVGSSVKDFG-------DNSAIAGISNIFIAETCEYKKHFLHFSPNMLILTNIDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +K + +   I  I+SFG    +
Sbjct: 196 VDFFENYEALEDAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDI-NIFSFGSKDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------D 309
           +FQ+      +E              V    + +H   N    L  +++          D
Sbjct: 255 NFQISNIVVKNEYFCFSFL---GLCNVELRTVLFHNVLNFSAALLALNLFLESNGKSIFD 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            + A+K ++      G  +R      +     +D+ Y  +P  ++     L  I    + 
Sbjct: 312 FEEAVKKIA--KNYSGIKRRVEVVKEKKGVIYMDD-YAHHPREIR---DTLLGIKDFYKN 365

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALP 419
           +RI +L  M      ++ F  D  EVLS+ +I             +      + L   + 
Sbjct: 366 KRI-ILDFMPHTFTRTKEFFNDFVEVLSVADILILHNIYLSNRENFNPDELSVKLFLNIK 424

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 425 KINKNTYFFKDVKDSVEFIKSLLISGDLFITMGAG 459


>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
           psychrophila LSv54]
 gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Desulfotalea psychrophila LSv54]
          Length = 456

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 113/353 (32%), Gaps = 38/353 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A       ++AITG+ GKTT   ++   L +  K     G+    +   L L     +
Sbjct: 106 ALAAPVLDRPVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGNIGVPL---LDLLSSGDE 162

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           VD  + E+    L     L     PHIA++  ++P HL     +    +AK  +F+    
Sbjct: 163 VDVIVLEVSSFQL----ELAGDFSPHIALLLNLSPDHLDRHGDLAGYRAAKMHLFQKQGM 218

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           T    ++ DD    L    S   G  + Y FG S  +D  +            E    G+
Sbjct: 219 TDIAIVSGDDPLCLL----SDGCGEASRYLFGFSAASDISV-------AAGHFEFDFAGQ 267

Query: 280 SMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                             N      I   L        + ++ F        R     + 
Sbjct: 268 REIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIERGIAAFTL---DAHRMEPVASI 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N  ++ +A+  L         R I + G         +  +  L    
Sbjct: 325 AGVQYYNDSKATNTGAVISALQQLV--------RVILIAGG------RDKGDNYRLLREA 370

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  +   G     L  AL   + V+ + ++        S   +GD V++
Sbjct: 371 VAGHVRTLICIGEATPLLVAALEDVVQVYRATSLAEAVSLAASFAEEGDSVLL 423


>gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus pyogenes NZ131]
          Length = 481

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 144/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       + +G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|148657887|ref|YP_001278092.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus sp. RS-1]
 gi|189029029|sp|A5UZT9|MURC_ROSS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148569997|gb|ABQ92142.1| UDP-N-acetylmuramate--L-alanine ligase [Roseiflexus sp. RS-1]
          Length = 468

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 148/442 (33%), Gaps = 54/442 (12%)

Query: 51  YDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +DGHD    A   GA  +V      D    + +       V      L +  +      +
Sbjct: 49  HDGHD---PAWIAGADALVATSAVRDDHVELSAARARGIPV------LRRADLWREWSQQ 99

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             ++A+ G+ GKTTT  ++ + L+         IG     +G+    AR        + E
Sbjct: 100 RRVVAVAGTHGKTTTTALIALMLTQAGGNPGFLIGGETPDLGIH---ARWGDPAAPLVVE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E       + P +AV+T +   H+  +   +   +A       + +   + + 
Sbjct: 157 A-----DEYDRTFLALTPDVAVMTNVEWDHVDIYPSPDNYEAAFRLFTRRVAQPQRLIVC 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA------DFQLRKWKQCSEQSWMEV-QLQGK 279
            DD     +     A       +  ++  +      D+     +     +  ++ +   +
Sbjct: 212 GDDPGALRVANHPDAQQYGIEEAIARNPASCRLAPMDWMAANVRYDGAMTNFDLWRYDRR 271

Query: 280 SM------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +             +G H  +N L  + + ++L  + D    AL+ +    G  +R+   
Sbjct: 272 TFGARLDGTYTMRLVGDHNVRNALAAIAVATLLGVERDAIADALAAY---RGARRRFDIK 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----- 388
                 T+ID+ Y  +P   +A  ++ +  +   + R +  L         +Q+      
Sbjct: 329 GEANGITIIDD-YAHHPT--EARATLAAARARFPQRRLVVYL--QPHTFSRTQALRDAWA 383

Query: 389 ----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
               H D+  +  +Y             AL   + R   V     +      I   L  G
Sbjct: 384 DAFDHADVVRIGDVYPARETGDPRTVAHALAGCI-RHNDVQAVGNVVEAAATIGGLLRPG 442

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           DV++   +     YR+  L+++
Sbjct: 443 DVLLTLGAGDG--YRVGELIID 462


>gi|240168216|ref|ZP_04746875.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium kansasii ATCC
           12478]
          Length = 488

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 157/432 (36%), Gaps = 38/432 (8%)

Query: 53  GHDFIL-HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD      +  G   V+     +         V      +  L +  V A+L +  T +
Sbjct: 61  GHDAASLDLLPGGVTAVITTRAAIPKTNPEL--VEARRRGIPVLLRPVVLAKLMAGRTTL 118

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            +TG+ GKTTT  ML +AL    +        +    V   L     +   G  +  ++ 
Sbjct: 119 MVTGTHGKTTTTSMLIVALQHCGR--------DPSFAVGGELGEAGTNAHHGSGDCFVAE 170

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P +AV+T I   HL  +   E          E L   G + +  DD  
Sbjct: 171 ADESDGSLLEYTPDVAVVTNIESDHLDFYGSTEAYVGVFDSFVERLAPGGALVVCTDDPG 230

Query: 232 FELLKAKSHALGIKTIYSFG--KSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHG 287
              L  +S  LGI+ +  +G  + + A        W+Q   ++   ++L G+    V   
Sbjct: 231 AAELARRSAELGIR-VLRYGSAEPEGAPLAATLLSWEQRGTEAVAHLRLAGERHPRVMRL 289

Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HMA N L  L     + A +D  +  L+ F   EG  +R+      G   + D+ 
Sbjct: 290 AVPGRHMALNALGALLAAIEVDAAIDEVLDGLAGF---EGVRRRFELVGAVGSVRVFDD- 345

Query: 346 YNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAE---------V 395
           Y  +P  + A ++ +  +  HG  GR + V      +   +++F  +            V
Sbjct: 346 YAHHPTEIGATLAAVRSVLQHGGTGRLLVVF--QPHLYSRTKAFAAEFGRALSAADAVFV 403

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L +Y      L+G    ++   +  S+ V Y      +   + ++   GDV+V   +   
Sbjct: 404 LDVYGAREQPLAGVSGASVAGHV--SVPVRYLPDFSAVAGEVAAAAGPGDVIVTMGAGDV 461

Query: 456 GF--YRLINLLL 465
                 ++  L 
Sbjct: 462 TLLGPEIVTALR 473


>gi|224024604|ref|ZP_03642970.1| hypothetical protein BACCOPRO_01331 [Bacteroides coprophilus DSM
           18228]
 gi|224017826|gb|EEF75838.1| hypothetical protein BACCOPRO_01331 [Bacteroides coprophilus DSM
           18228]
          Length = 458

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 111/337 (32%), Gaps = 32/337 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   L      + + G+ GKTTT  M    L        C            T   +
Sbjct: 101 RAQVLGMLTRTERGLCVAGTHGKTTTSTMAAHLLHQS--HIGCNAFLGGISKNYGTNLLL 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               DF + E       E     H + P+  VIT   P HL  +   E    +  +    
Sbjct: 159 SDKSDFVVIEA-----DEFDRSFHWLTPYATVITATDPDHLDIYGTEEAYLESFRKYTSL 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQ 275
           +   G + +       + L  +       T Y++   +  DF     +    +   + + 
Sbjct: 214 IRPDGFLII------HKGLAMQPDVQPGVTTYTYSIEEG-DFHATNIRIGGGEIQFDYIS 266

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G   ++      Y   +N +  + +  I  A  +    A++ F   +   +R+   + 
Sbjct: 267 PLGNICDIRLGVPVYVNIENGIAAMALAQIAGATAEEIKTAMASFGGVD---RRFDFKIK 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                 + + Y  +P  ++ +I+ L  + P  + +  AV      +   ++ F+ + AE 
Sbjct: 324 NDHLAFLSD-YAHHPEEIRKSITSLKALYP--DRKITAVF--QPHLYTRTRDFYKEFAES 378

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIH 423
                   +L +Y    + + G     + D L   + 
Sbjct: 379 LSLLDEVILLDIYPARELPIPGVTSRLIYDNLRPDME 415


>gi|161486821|ref|NP_722058.2| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mutans UA159]
          Length = 443

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 130/374 (34%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T + + G+ GKT+T  +L   L +I  T   IG             R  
Sbjct: 93  HEFLGEFMNQFTSLGVAGAHGKTSTTGLLAHVLKNITDTSYLIGDG---------TGRGL 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+G++++ +A  +  + +
Sbjct: 144 ANSQYFVFE-----SDEYERHFMPYHPEYSIITNIDFDHPDYFTGVDDVFAAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D +   L + +       IY +G   N DF      + +  S  +V+  
Sbjct: 199 KKG--LFVYGEDPYLRKLTSSA------PIYYYGFKDNDDFVAYDIMRSTNGSDFKVRHG 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +   H    G H   N    +  + I   ++D   + L  F   +    R       
Sbjct: 251 QNELGSFHVPAFGRHNVLNATAVIANLYIAGVEMDLVRQHLKTFSGVK----RRFSEKLI 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+ID+ +  +P  + A +    Q            PH   R IA+L +  +    + 
Sbjct: 307 NDVTIIDD-FAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +  LA++  S   + H       V  L D + +   V   + +  L            
Sbjct: 366 SVY--LAQIYGSAREVDH---GDVKVEDLADKIVKPAKVITVDNVSPLLDH------HNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|255656631|ref|ZP_05402040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-23m63]
 gi|296449914|ref|ZP_06891678.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296878295|ref|ZP_06902304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
 gi|296261184|gb|EFH08015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296430743|gb|EFH16581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
          Length = 451

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 127/359 (35%), Gaps = 35/359 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A +L +    I ITG+ GKTTT  ++    S  K+    +G+  N +   +  +
Sbjct: 96  IGEVELAFKLSNNPIFIGITGTNGKTTTTSLVGEIFSRAKRDTYVVGNIGNPVIDTIETS 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +    + EL    L  I       RP ++ I  I   HL+    +E+   AK  IF
Sbjct: 156 N---EESVLVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKTNIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWM 272
                     LNYDD   + L  K +A     +  F ++K  N    L       +    
Sbjct: 209 MNQTSEDFCVLNYDDEIVKGLADKCNA----KVIYFSRTKKVNGGVYLENNDIIIDIDDK 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L    +       G H  +N +  + I  +   D++     L  F   E    R   
Sbjct: 265 IKFLNKDDV----SLPGGHNLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVE---HRQEF 317

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N      +++S   NP S   AI          +   I + G M    +   +F  +L
Sbjct: 318 VRNLDNVIYVNDSKGTNPDSTIKAIQS-------YDRPIILIAGGM----DKGSNF-DEL 365

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E    Y +  + L G     +++         +H  + M+            GD+V++
Sbjct: 366 LETAKSY-VKSLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS5005]
 gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes M1 GAS]
 gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS5005]
          Length = 481

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 144/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       + +G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter sp. X514]
 gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
 gi|226722952|sp|B0K3H2|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           sp. X514]
 gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
          Length = 454

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 126/366 (34%), Gaps = 47/366 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  LGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E+    L  I+      +P I+ I  I P HL      E     K  IF
Sbjct: 155 ---AEDDFIVAEISSFQLETIKEF----KPKISCIINITPDHLDRHKTFENYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E   +     LNYDD     LK K+       ++ F +       L       + S   +
Sbjct: 208 ENQREDEYTVLNYDDPVTWSLKNKAKC----RVFPFSRKS----LLENGAYIKDGSIY-I 258

Query: 275 QLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + G + +++     +  G H  +N L    +  +     D     L  F   E    R 
Sbjct: 259 SVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVE---HRI 315

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQS 387
                       ++S   NP +   AI  L           + + G      E  E  ++
Sbjct: 316 EFVDEINGVKFYNDSKGTNPDASIKAIQALKT-------PIVLIAGGYDKGSEFDEFVKA 368

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD 443
           F+  +           + L G     ++D   +       + ++ T++        S  +
Sbjct: 369 FNGKV---------KKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKE 419

Query: 444 GDVVVV 449
           GD V++
Sbjct: 420 GDSVLL 425


>gi|303235636|ref|ZP_07322243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
 gi|302484083|gb|EFL47071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
          Length = 453

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 121/358 (33%), Gaps = 34/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R  +   +  ITGS GKTTT  ++     +        G+    + + +   
Sbjct: 100 ISEIEFAGRYTNSKMVC-ITGSNGKTTTTSLIYHIFKNAGYDVGLAGNIGKSLALQI--- 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + EL    L  +    +  R +IA++  I P HL  +    E+ A AK  I
Sbjct: 156 -AEEPHEYYVIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDFQFEKYADAKMRI 210

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM- 272
            +   K  +     DD   +    K     ++  +S  K K +           E  ++ 
Sbjct: 211 IQNQTKEDSFIYWNDDPVIKKELEKFDVKAVQYPFSELKEKGS------IGYIEEGQYIL 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E        +      G H   N L      +I     +   K+LS F   E    R   
Sbjct: 265 ETPTPFNMEQEDLSLTGKHNIYNSLAAGLASNISGITKENIRKSLSDFPGVE---HRLEK 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S   N  +   A+  +           I ++G     G+   + +  +
Sbjct: 322 VCKVAGVQYINDSKATNVDACWYALESMRT-------PTILIIG-----GKDKGNDYTPI 369

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E++    +  V+L G     L +      I V  + +M             GD V++
Sbjct: 370 KELVKEKCVGLVYL-GADNKKLHENFDELGIPVRDTHSMKECMDACYEMAKSGDTVLL 426


>gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS8232]
 gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes MGAS8232]
 gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 481

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 144/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       + +G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
 gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
          Length = 470

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 120/364 (32%), Gaps = 37/364 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +   A RL  +   IA+TG+ GKTTT  +    LS+ +     +G+        +   
Sbjct: 98  MGEPEFAWRLSPE-RWIAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIGETAISQVD-- 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D D+ + EL    L      T    P  AV+  I P HL    G E  A AK +I 
Sbjct: 155 -RRQDGDWFVAELSSYQLA----TTSEFHPRAAVLLNITPDHLRWHRGFENYARAKLKIL 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + L++     ++ DD     L ++  A   + I        A       +       + V
Sbjct: 210 QNLDENDLAIIDVDDPGLRRLGSQVIA-SHRRILRLAHDDPASVDAAFVR----AGRLVV 264

Query: 275 QLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +L G   +          G H   N L       +  A      + L  F   E    R 
Sbjct: 265 RLDGIEHDLARVSELAVAGAHNVSNALAASASALLAGASDAAVSEGLRAFSSLE---HRM 321

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A +       ++S   N  +++ A++           R I +LG      +     H 
Sbjct: 322 EPAGDIDGVRFYNDSKATNTDAVEKALTAF------PGDRVILLLGG----YDKGTPLHG 371

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG-----LFLFIQSSLVDGD 445
               V+    I  V   G       DA+  +      +  +           +S    GD
Sbjct: 372 FATRVVQQ--IGAVVCFGQARRRFMDAMTGAASGLDVDVAEADDLLDAVDVARSLACRGD 429

Query: 446 VVVV 449
           V+++
Sbjct: 430 VILL 433


>gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 88/503 (17%), Positives = 165/503 (32%), Gaps = 62/503 (12%)

Query: 4   LWTFHDLLQAIQ-----GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           + T HD+ + ++       +        V  ++ DSR + P   F   KG  +   +++L
Sbjct: 1   MITTHDVERILREQGLLCRADKNEEAAPVTWVTCDSREVIPGTLFIC-KGAEFLP-EYLL 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            AV  G    +            ++  F V D+  A+  ++ A          +  ITG+
Sbjct: 59  EAVAYGCIAYMSEERWGTP---KTVRGFVVKDIRRAMAVVSAAFFEYEPEALKLTGITGT 115

Query: 117 VGKTTTKEMLTIAL-----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL---- 167
            GKTTT   L   L        KK    I S  N  G   + A M       ++EL    
Sbjct: 116 KGKTTTAWYLRAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVLYELIARV 175

Query: 168 --GMSHLGEIR--------FLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
               S    I              +   + +   I+  H+        E+   +K  +  
Sbjct: 176 RAAGSEYMTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRDFEDYFQSKLSL-- 233

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L + GT  +N D  + + +  ++     + + +FG+   A  + R   +   +   EV 
Sbjct: 234 -LRQCGTACVNLDSDYAQQILKEARK--AQRVVTFGQHHEAQLRYRILPEKDGKQTFEVT 290

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + +      G    +N +  +    +    V    KAL+      GR + +     
Sbjct: 291 CPQFTEQFSLKMRGSFNIENAVAAIAAAQVYGVPVHCMQKALAE-TTVPGRMEVFES--- 346

Query: 336 QGFFTLIDESYNANPASMKAAIS-VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                     Y  N  S +     V  +       R I V G     G  + +   +L  
Sbjct: 347 GDKKVCAIVDYAHNQLSFQKLFQTVFQEYRSFH--RIITVFGCP---GGKALNRRRELGV 401

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-------FIQSSL------ 441
           +  +++  +V+++        ++        Y E   G           I+S+L      
Sbjct: 402 LAGMFS-DYVYVTSDDPGMEDESRIADEVGSYVEMAGGACDCIADRRIAIRSALEKAGSG 460

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
            +  +V+V    S  F R+   L
Sbjct: 461 TEKTLVLVLGRGSEKFQRIGRRL 483


>gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 481

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 143/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       +  G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|290890810|ref|ZP_06553877.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
 gi|290479582|gb|EFD88239.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
          Length = 435

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 142/424 (33%), Gaps = 49/424 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           DF    ++    +V        +       V     V   L     A     +    IA+
Sbjct: 52  DFDPDLIKSNYVVV-----KGNAFSDDHPQVLAAKKVGAKLLTYPQAVEEVIRRHFSIAV 106

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +G+ GKT+T  +L   LS+ + T   IG           + +      + + E       
Sbjct: 107 SGAHGKTSTTSLLAHILSNFESTSYLIGDG---------VGKGVFSSKYFVVEA-----D 152

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E         P +A+IT I   H   +  ++++ SA +E  + ++K   IF   +D   +
Sbjct: 153 EYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGEDPEIK 210

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292
            +K K+       I S+G  K+  F      + +E S+  +   G+ +      I G H 
Sbjct: 211 KIKPKTA-----RILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATIEGDHG 265

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             +    + +   L   VD   K L  +   + R    + A        I + Y  +P  
Sbjct: 266 ILDTTAAIAVADYLGFSVDQIQKGLLTYQGAKRRFNISQVAD-----LTIVDDYAHHPTE 320

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +KA I    Q       R +AV            +F  +    L   +   V+++     
Sbjct: 321 IKATIDAARQ--KFPNKRLVAVF--QPHTYTRVNAFKDEYVNALE--SADKVYIT-PIFG 373

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDVVVVKSSNSCGFYRLINLLL 465
           +L++    +      + +      I         S   G V+V   +      +  + L 
Sbjct: 374 SLREKAGNAKSEDILDKLPNAGAIISESNAYDKLSAEHGSVLVFMGAGDI--EKYEDALK 431

Query: 466 EEFP 469
           + F 
Sbjct: 432 KGFE 435


>gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
 gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
          Length = 546

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 148/448 (33%), Gaps = 55/448 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +L +              G V G+ ++SR + P + + A+ G    G  F   A   
Sbjct: 23  TVEELARLTGARVRAASSGLVGAVTGVVLNSREVQPGDLYAALPGAQVHGARFAADAAAA 82

Query: 64  GAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGS 116
           GA  V+ +      +    +  PV   +     +  +A A             + A+TG+
Sbjct: 83  GAVAVLTDPAGERLLDEAGVSLPVLVSEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGT 142

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFGIFELGMSHLG 173
            GKTTT    T  L ++  T   IG+         +P  L          +  L M   G
Sbjct: 143 NGKTTTTYFTTAILRALGHTTGLIGTIEILAGDTPIPSRLTTPEAPHVHSLLAL-MRERG 201

Query: 174 ----EIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                +   +H +  H        +A  T +   HL     +EE   AKA++F     + 
Sbjct: 202 ITATAMEVSSHALEFHRVDGVHYGVAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTSR 261

Query: 222 TIFLNYD-DSFFELLKAKSH-ALGIKTIYSFGK---------SKNADFQLRKWKQCSEQS 270
            + +  D D +   +  ++   LG   + +               A + LR   +    S
Sbjct: 262 AVVVLSDEDPWSGAMARRAREELGDANVTTVALRGSEDAERGQDAAQWTLRSLTRRGIGS 321

Query: 271 WMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA----LSVFHPKEG 325
              ++   G+ + V     G     N  + + +V     +++T  +A      +     G
Sbjct: 322 AFVLRHRDGRELRVHTGLPGDFNVANAALAVLMVLDSGVELETLQRALDEHDPLTASVPG 381

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +        G        +  NP ++   +  L  + P  +GR I V G     G+  
Sbjct: 382 RMELV------GTRPTSLVDFAHNPDAL---VRALRSVDPE-DGRVIVVFGA---TGQRD 428

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                 +  V +      V ++     A
Sbjct: 429 TGKRPVMGRVAAE-EADVVIVTDDDPHA 455


>gi|288906009|ref|YP_003431231.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus gallolyticus
           UCN34]
 gi|306832028|ref|ZP_07465183.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978976|ref|YP_004288692.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732735|emb|CBI14309.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus gallolyticus
           UCN34]
 gi|304425954|gb|EFM29071.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178904|emb|CBZ48948.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 443

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 130/386 (33%), Gaps = 50/386 (12%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V++                + T   + G+ GKT+T  +L+  L +I  T   IG    
Sbjct: 81  YAVNNGFKFKRYHEFLGDFMRQFTSFGVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG-- 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    R   + ++ +FE       E +       P  ++IT I   H   F  I++
Sbjct: 139 -------TGRGSANSNYFVFE-----SDEYQRHFMPYHPEYSIITNIDFDHPDYFKSIDD 186

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  A  +  + ++K   +FL  DD++   + + +       IY +G     DF      +
Sbjct: 187 VFDAFNDYAKQVQK--ALFLYGDDAYLRKITSDAD------IYYYGFKDTDDFVAYDIVR 238

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+   + +        G H   N    +  + I   D++   + +  F   +
Sbjct: 239 TTNGSAFKVKHGDEELGSFHLPAFGRHNILNATAVVANLYIAGIDMELVAEHMKTFAGVK 298

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAV 374
               R          T+ID+ +  +P  + A +    Q            PH   R IA+
Sbjct: 299 ----RRFTEKVINNTTIIDD-FAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIAL 353

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           L +  +    + S +     +  +Y     V      V  L   + +S  V   E +  L
Sbjct: 354 LDEFADALNQADSVY-----LAPIYGSAREVDHGDVKVEDLASKIQKSAKVISLENVSPL 408

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYR 459
                    D  V V   +     Y 
Sbjct: 409 LDH------DNAVYVFMGAGDIQMYE 428


>gi|297581386|ref|ZP_06943309.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534224|gb|EFH73062.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 451

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 143/413 (34%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K    ++ S   V  +G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAEKI--TADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I       D ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQADDQILVM-SNG-GFEGIHGKLLAALQQK 451


>gi|322517501|ref|ZP_08070373.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           ATCC 49124]
 gi|322123877|gb|EFX95440.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           ATCC 49124]
          Length = 442

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 134/387 (34%), Gaps = 55/387 (14%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T   + G+ GKT+T  +L+ A+ +I  T   IG             R  
Sbjct: 93  HEFLGHFMNQFTSFGVAGAHGKTSTTGLLSHAMKNITDTSYVIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ I+++ SA  +  + +
Sbjct: 144 ANAQYFVFEA-----DEYERHFMPYHPAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +DS    + + +       IY +G  +N DF   +  + +  S   V+  
Sbjct: 199 QKG--LFVYGEDSNLRKITSNA------PIYYYGFEENDDFMATEIVRTTTGSNFNVKHD 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   H    G H   N    +  + +   D+    + L  F   + R      +   
Sbjct: 251 GQIIGKFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKVISD-- 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D  E    + 
Sbjct: 309 ---TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  LA++  S   + H       V  L   + +   V   E +  L         D  
Sbjct: 366 AVY--LAQIYGSAREVDH---GDVKVEDLAAKINKPAKVVTVENVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGF-----YRLINLLLEE 467
           V V   +            L+  L   
Sbjct: 415 VYVFMGAGDIQLYERSFEELLASLQNH 441


>gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
 gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
          Length = 441

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 129/374 (34%), Gaps = 31/374 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +   +I        L  L  + + A   ++A IIAITGS  K T   ++   +      
Sbjct: 70  DLNETTIRTIIEQHTLKPLGDIELFA-QHARAPIIAITGSNAKGTVTSLIGKMIQRAHLN 128

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A  G+        L L   PV  DF + E+    L      T+ +RP +A I  I+P H
Sbjct: 129 VAVGGNIGKP---ALDLLNEPVP-DFYVLEISSFQL----ETTYSLRPKLASILNISPDH 180

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    +AK  I+           N DD               K I SFG +   
Sbjct: 181 LDRHKTLTAYINAKQRIYHQ---ADIALWNRDD------LNTFPQARTKKIISFGLTTTT 231

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIK 315
                 +   S Q     +   + + V    I G H   N +  L I   +       + 
Sbjct: 232 PHAHEFYLYNSHQKNFIAKGHDRLLPVDALFIQGRHNWANAIAALTIGHAIGLPTKAMLT 291

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  F   +G   R +        T  ++S   N  +  AA++ L    P   G+ I + 
Sbjct: 292 ALCEF---KGLPHRCQWVKEFKGVTWYNDSKATNVGATLAALNGLG---PSISGKIILIA 345

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G + +  + S   H  +   +       + L G     LK+ L +S  +     +     
Sbjct: 346 GGLSKNADFSL-LHNPVKHYVK-----KIILIGRDAALLKNTLEKSTAIQTVSDLRHAVN 399

Query: 436 FIQSSLVDGDVVVV 449
               +   GD+V++
Sbjct: 400 LAHETARRGDIVLL 413


>gi|15639332|ref|NP_218781.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025574|ref|YP_001933346.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|6093444|sp|O83361|MURC_TREPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620436|sp|B2S2T8|MURC_TREPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3322616|gb|AAC65326.1| UDP-N-acetylmuramate--alanine ligase (murC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018149|gb|ACD70767.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059731|gb|ADD72466.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 481

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/432 (17%), Positives = 137/432 (31%), Gaps = 45/432 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               V   A  V    D +A      IP     + LG ++                I G 
Sbjct: 73  APDVVIHSAAYVPEENDELAEAYRRGIPTLTYPEALGDISCARF---------SCGIAGV 123

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   +  ++      +GS  +       +               ++   E 
Sbjct: 124 HGKTTTTAMIAQMVKELRLDASVLVGSAVSGNNDSCVVLNGDT--------FFIAETCEY 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R       P   V+T++   H   +S  E+I +A     + L + G +F   DD     +
Sbjct: 176 RRHFLHFHPQKIVLTSVEHDHQDYYSSYEDILAAYFHYIDRLPQFGELFYCVDDQGVREV 235

Query: 236 KAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +       +Y  +G+    D+ +        +    ++  G + E      G H   
Sbjct: 236 VQLAFFSRPDLVYVPYGERAWGDYGVSIHGVQDRKISFSLR--GFAGEFYVALPGEHSVL 293

Query: 295 NMLMTLGIVSIL------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           N    L +   L         V+       V    +G  +R            +D+ Y  
Sbjct: 294 NATGALALALSLVKKQYGEVTVEHLTALRKVLALFQGCRRRSEVLGEVRGILFMDD-YGH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI------- 401
           +P ++K  +  L    P    RRI V   M      + +   + AE     ++       
Sbjct: 353 HPTAIKKTLRGLKTFFPE---RRIVV-DFMSHTYSRTAALLTEFAESFQDADVVILHEIY 408

Query: 402 ---SHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS-CG 456
                V+    +   L +   R    V+Y E +     F+Q+ L +GD+ V   +   C 
Sbjct: 409 ASAREVYQGEVNGEHLFELTKRKHRRVYYYEAVMQAVPFLQAELKEGDLFVTLGAGDNCK 468

Query: 457 FYRLI-NLLLEE 467
              ++ N   EE
Sbjct: 469 LGEVLFNYFKEE 480


>gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 460

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 113/348 (32%), Gaps = 32/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A II +TGS GKTTT  M+T  L+  +K      + N  +    T  +   D D  
Sbjct: 108 QMTDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKSTAD-DTI 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L  I+ L     PH+AV+T I   HL      +   +AK  I          
Sbjct: 167 VMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFF 222

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N+D   +  L  +S A  +    +    + A    +  K         +         
Sbjct: 223 VVNFDSDEWRQLSKRSRAQVVPFARTSEIDRGA--YEKNGKLYYND-EFIMNADD----- 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N L  +    IL           +V     G   R +  L        +
Sbjct: 275 -IKVPGQQNVENALAAIATAKILGKSNLAI---TNVLETFTGVRHRVQFVLEADGRKFYN 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   +  + + A+              I +L    + G           + +       
Sbjct: 331 DSKATDIEATQIALEGFDH--------PIVLLAGGLDRGYTFDKMVPQFKQHVKAA---- 378

Query: 404 VWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L G     L+++L ++   ++   + +D            GD++++
Sbjct: 379 -VLFGQTADLLEESLQKASVKNITKVDNLDEAVPAAYHYSDSGDIILL 425


>gi|254303962|ref|ZP_04971320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324154|gb|EDK89404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 432

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/353 (21%), Positives = 132/353 (37%), Gaps = 43/353 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF 
Sbjct: 87  KDLKTKIIAITGTNGKSTTTAKISDMLNHAGYKAAYAGNIGRSLSE---VLLKEKDLDFI 143

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  +       +P+I++I  + P H+  +   +E    K  I +   +    
Sbjct: 144 SLELSSFQLENVENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNIVKNQTEDLYF 199

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSME 282
             N DD     ++ ++  +  K I S  K K AD  ++  K C  E + ++V        
Sbjct: 200 IENIDD---VEIEKRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENTIIDVD------- 248

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L  +    IL  D +   + L +  P E    R     N G    I
Sbjct: 249 -KLSLKGIHNLENTLFMVATAEILKIDKEKLKEFLMIATPLE---HRTELFFNYGKLKFI 304

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S K AI              I + G   +  +L+      LAE++   NI 
Sbjct: 305 NDSKATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIK 350

Query: 403 HVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD--GDVVVV 449
            V+L G     ++  L +       +H    ++     ++        +V+++
Sbjct: 351 EVYLIGVIADKIESELKKIGYEDSKIHKLVNIENSLQDMKKRFTKDSDEVILL 403


>gi|322387438|ref|ZP_08061048.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus infantis ATCC
           700779]
 gi|321141967|gb|EFX37462.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus infantis ATCC
           700779]
          Length = 444

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSYLIGDG---------TGRGSENAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G ++ N DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEADNNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L+ F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLNTFGGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D  +    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L   + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLAAKIDKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQS 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|320537962|ref|ZP_08037869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
 gi|320145215|gb|EFW36924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
          Length = 480

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 137/388 (35%), Gaps = 39/388 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D    +          + A I+A+TGS GK++T   L   L  +       G+       
Sbjct: 95  DAAKHIESDVSVFLRLTDAPILAVTGSKGKSSTVSALQYGLQGMGFRSFLGGNITIS--- 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL            + EL    L ++R    L++P +AVIT + P H + +  +E   + 
Sbjct: 152 PLDFLSETGKDTPVVLELSSWQLADLRG-KKLLKPEVAVITPVMPDHQNWYGSMEAYVAD 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  ++         F NYDD + ++  +++ A     ++ +      +     W   S +
Sbjct: 211 KKLLYADQTPEEFCFCNYDDQWGKIFASETVA----QVFWYSIKPLPENLCGAWLDKSGE 266

Query: 270 SWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILT------------ADVDTAI 314
           ++  +  Q +    +       G  + +N++     + +              +D++ A 
Sbjct: 267 AFFRLHAQAEPLRLLPNEIMVPGSILKENVMNAAAAIFLFVRKQRGSFADTALSDLELAA 326

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K  +V     G   R      QG     +++    P +  AA+   ++       + + +
Sbjct: 327 KLSAVMKTYPGLEHRLEFFYEQGGVRFYNDTTATVPEATAAALDAFTE-------KPVLI 379

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDG 432
            G     G   +     +AE           L+G     L   L +    +      +D 
Sbjct: 380 CG-----GTDKKLDFTPIAEAAGKAK-EIFLLAGTGTDLLAPLLEKKNIAYRGPFANLDD 433

Query: 433 LFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
           L + ++  +  GD VV    + S G ++
Sbjct: 434 LLICVKDCVQAGDRVVFSPGATSFGMFQ 461


>gi|312864088|ref|ZP_07724324.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           F0396]
 gi|311100501|gb|EFQ58708.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           F0396]
          Length = 442

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 132/374 (35%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T   + G+ GKT+T  +L+ A+ +I  T   IG             R  
Sbjct: 93  HEFLGHFMNQFTSFGVAGAHGKTSTTGLLSHAMKNITDTSYLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ I+++ SA  +  + +
Sbjct: 144 ANAQYFVFEA-----DEYERHFMPYHPAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +DS    + + +       IY +G  +N DF   +  + +  S   V+  
Sbjct: 199 QKG--LFVYGEDSNLRKITSNA------PIYYYGFEENDDFMATEIVRTTTGSNFNVKHD 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   H    G H   N    +  + +   D+    + L  F   + R      +   
Sbjct: 251 GQIIGKFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKVISD-- 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D  E    + 
Sbjct: 309 ---TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  LA++  S   + H       V  L   + +   V   E +  L         D  
Sbjct: 366 AVY--LAQIYGSAREVDH---GDVKVEDLAAKINKPAKVVTVENVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|325690935|gb|EGD32935.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK115]
          Length = 444

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 164/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                  I      + LG   +  V          + 
Sbjct: 75  NNVEIAYADANG------------------ISYKRYHEFLGGFMRDFV---------SLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + + +       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSNA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|229524524|ref|ZP_04413929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
 gi|229338105|gb|EEO03122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
          Length = 451

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D     +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q +K    ++ S   V  +G+ + +V    +G H   N LM +     
Sbjct: 239 EFS---GEQGEWQAKKI--TADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R          T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVTVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G+ + IAVL      M  +G   ++         SL++   V+L    ++    + + +
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                   S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCQQPAQVSANMDEFVAMIAKEAQAGDQILVM-SNG-GFEGIHGKLLVALQQK 451


>gi|187918670|ref|YP_001884237.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia hermsii DAH]
 gi|119861518|gb|AAX17313.1| UDP-N-acetylmuramate--alanine ligase [Borrelia hermsii DAH]
          Length = 486

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 142/398 (35%), Gaps = 51/398 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L IP+    +VLG ++K             I + GS GKTTT       L  +  +
Sbjct: 110 EACELGIPILSYPEVLGKISKKYY---------SIGVAGSHGKTTT----AAFLGMLFNS 156

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                +      V     +  +     IF   ++   E R       P + V++ I   H
Sbjct: 157 LGLQPNVILGASVKDFKNKSSLVGQGNIF---IAETCEYRNHFLHFSPDMIVLSNIDYEH 213

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E + +   +    L++ G + +N D+     +  K     IK ++S G +  A
Sbjct: 214 VDFFENYEAVLNVFLKYINNLKQNGILIINADEVNLLKITNKILRKDIK-VFSVGFNSLA 272

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           DF++  ++   E    +  L G  + +    I  H   N    L  + +   +    + +
Sbjct: 273 DFKIEHFEVIDEFLKFDF-LGGIDIRLRTPLI--HNVLNFASALLALKLFLEEHKKLVWS 329

Query: 317 L-----SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                  V     G  +R    + +     +D+ Y  +P  +++ +  L       + RR
Sbjct: 330 FDERIKIVAKEYMGIKRRMEFIMEKDGVIYLDD-YAHHPKEIESTLLGLKNF---YKDRR 385

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW----------------LSGFHVLALK 415
           I +L  M      +Q    +  +VLS  N+  +                 LS    LALK
Sbjct: 386 I-ILDFMPHTFTRTQVLFDEFVKVLS--NVDVLILHNIYLSVRENFDPNKLSRELFLALK 442

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           D    + +V++ + +     FI+  L   D+ V   + 
Sbjct: 443 DL---NQNVYFFKEVVDSVDFIRGLLKRNDLFVTMGAG 477


>gi|262066314|ref|ZP_06025926.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380009|gb|EFE87527.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 463

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 39/335 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            +  G DF++      A   +  T+   +            + +  L +  + A+L ++ 
Sbjct: 56  ENVKGSDFVI------ASTAIKETNPEYAYAK--------KNGIKILKRGELLAKLLNRE 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T IAI G+ GKTTT  ML+  +     T          I V   L  +  +   G  E  
Sbjct: 102 TGIAIAGTHGKTTTSSMLSAVMLKKDPT----------IVVGGILPEIKSNAKPGKSEYF 151

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           ++   E       + P  +VIT I   HL     +E I  +  E     +K     +  D
Sbjct: 152 IAEADESDNSFLFMNPEYSVITNIDADHLDVHGNLENIKKSFIEFILHTQKES--IICMD 209

Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHH 286
                 + A S     K++ ++  K +NA+   +  +  + ++  EV +  +   E   +
Sbjct: 210 SKNL--MDAISKLPEEKSVTTYSIKDENANICAKNIRIVNRKTIFEVYVNKELKGEFSLN 267

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH------PKEGRGKRYRCALNQGFFT 340
             G H  QN L  + +      + +   +AL+ F             +      N+    
Sbjct: 268 IPGEHNIQNSLPVIYLALKFGLNKEEIQEALNQFKGSKRRYDVLYDQELENGYGNKTKKV 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            I + Y  +P  +KA +  +  +      R +A+ 
Sbjct: 328 RIVDDYAHHPTEIKATLKAIKSVD---NSRLVAIF 359


>gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
          Length = 460

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 113/348 (32%), Gaps = 32/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A II +TGS GKTTT  M+T  L+  +K      + N  +    T  +   D D  
Sbjct: 108 QMTDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKSTAD-DTI 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L  I+ L     PH+AV+T I   HL      +   +AK  I          
Sbjct: 167 VMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFF 222

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N+D   +  L  +S A  +    +    + A    +  K         +         
Sbjct: 223 VVNFDSDEWRQLSKRSRAQVVPFARTSEIDRGA--YEKNGKLYYND-EFIMNADD----- 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N L  +    IL           +V     G   R +  L        +
Sbjct: 275 -IKVPGQQNVENALAAIATAKILGKSNLAI---TNVLETFTGVRHRVQFVLEADGRKFYN 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   +  + + A+              I +L    + G           + +       
Sbjct: 331 DSKATDIEATQIALEGFDH--------PIVLLAGGLDRGYTFDKMVPQFKQHVKAA---- 378

Query: 404 VWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L G     L+++L ++   ++   + +D            GD++++
Sbjct: 379 -VLFGQTADLLEESLQKAGVKNITKVDNLDEAVPAAYHYSDSGDIILL 425


>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           typhi str. Wilmington]
 gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
          Length = 457

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 109/304 (35%), Gaps = 31/304 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +  ++V      +IP+    D+L                  IAITG+ GK+TT  +++
Sbjct: 73  VPLTHEVVRIAHHFNIPIISDIDLL---------FEKSKNLKFIAITGTNGKSTTAALIS 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+S    Y   G+            +     D  + EL    L     L  +    +A
Sbjct: 124 HILNSNGLDYTVAGNIGVP------ALQAKASKDGYVLELSSFQLD----LVKIFTVKVA 173

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  I P HL  +  +    +AKA+IF+ ++K     +N D+ +   +        +  +
Sbjct: 174 VLLNITPDHLDRYQDMNGYIAAKAKIFDRMDKDSYAVINIDNDYCRKIFLLLQREQLIKL 233

Query: 248 YSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             F  +K  N    +   K        ++ L         +  G H  +N+  +  +  I
Sbjct: 234 IPFSVTKILNNGISIVDDKIHDNNLTYKLPLN-------KNLQGLHNCENIAASYAVSKI 286

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  +    ++++S F        R +   +    +  ++S   N  S   +I  L  I  
Sbjct: 287 IGVESKKILESISSFQSLH---HRMQYIGSINNISFYNDSKATNAISALQSIKALDNIYW 343

Query: 366 HGEG 369
              G
Sbjct: 344 LAGG 347


>gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 483

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 138/425 (32%), Gaps = 58/425 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FF  KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSREADNSTLFF-TKGATFKK-EYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
           IP   V D+  A++   +       +   IIA TG+ GKTT        L    KT  ++
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHKTAMFS 144

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHL----GEIRFLTH---LVRPHI 186
            + +  +      +    P  +D           GM+HL        +L      +   +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQNGMTHLIMEVSSQAYLVERVYGLTFDV 204

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+        E+    K  +      +  + +N    +F ++  +      
Sbjct: 205 GAFLNISPDHIGPIEHPTFEDYFYHKRLLMAN---SKAVVVNAGMDYFNVVAQQVANTPH 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302
                       DF  +      E     +  + GK +       IG    +N +     
Sbjct: 262 ------------DFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K ++        G+        G    +D  Y  N  S++  +SV+ +
Sbjct: 310 CLRLGTSLADIQKGIAQ---TSVPGRMEVITQTNGAKVFVD--YAHNGDSLEKLLSVVEE 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
              H +G    +LG     G   +S   D A V++ +   HV L+          A+ + 
Sbjct: 365 ---HQKGDLHLILGA---TGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQAIAEE 418

Query: 418 LPRSI 422
           +   +
Sbjct: 419 IASQV 423


>gi|32490954|ref|NP_871208.1| hypothetical protein WGLp205 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173033|sp|Q8D2Z7|MURC_WIGBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25166160|dbj|BAC24351.1| murC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 153/401 (38%), Gaps = 56/401 (13%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKK 135
              L+IPV    + L  L +             I ++G+ GKTTT  +++     + +  
Sbjct: 91  AKKLNIPVVKRAEFLSELMRFKYG---------IIVSGTHGKTTTTSIISYIYKEAKLFP 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           TY   G  NN             +  + I E   S    +       RP I+V+T I   
Sbjct: 142 TYLYGGRLNNSDDYGN-----LGNSKYWISEADESDNSFL-----FFRPIISVVTNIEKD 191

Query: 196 HLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL       +++  +  +    +   G   L  DD   + +    +    K I ++G ++
Sbjct: 192 HLESYQGNFKKLKESFIKFLHNIPFYGYSVLCLDDIEIKKIIPLIN----KKIVTYGFNR 247

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           N+DF + K+ Q +++    V ++ +   ++ V + +G H A N+   + I        + 
Sbjct: 248 NSDFCITKFFQSNKKIIFIVYIKHQKRYLKFVSNLLGKHNALNITAAITIAIKEGIKYNI 307

Query: 313 AIKALSVFHPKEGRGKRYRCA--------LNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + ++  F    G  +R+            N+     I + Y  +P  +K  I  + +I 
Sbjct: 308 ILNSIKKF---PGINRRFDFINKYDLSNLNNKKGTITIVDDYGHHPTELKLTIKSVKKIW 364

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLALK 415
              + R I +          ++  +    +VLS  +   I  ++ +G       +   L 
Sbjct: 365 --NKRRLIMIF--QPHKYTRTKYLYNYFVKVLSTVDILLIMEIYSAGENPIYKINSKNLC 420

Query: 416 D---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
               AL RS HV +      LF  ++  L + D+++++ + 
Sbjct: 421 QSIMALKRS-HVIFIPNEKFLFKKLELLLKNNDILLLQGAG 460


>gi|319953741|ref|YP_004165008.1| udp-n-acetylmuramate--l-alanine ligase [Cellulophaga algicola DSM
           14237]
 gi|319422401|gb|ADV49510.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga algicola DSM
           14237]
          Length = 452

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 136/375 (36%), Gaps = 46/375 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLAR 155
           +  V   + ++   +A+ G+ GKTTT  +L   L  +     A +G  +   G       
Sbjct: 103 RSEVLGLVTNETFCLAVAGTHGKTTTSSILAHILKEAQLPMTAFLGGISEDFGSNFYF-- 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                +F + E        +R     + P IA IT++   HL  +   EE+  +      
Sbjct: 161 --QGSEFSVVEADEFDRSFLR-----LSPDIACITSMDADHLDIYGTGEELHKSFRAFAA 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L+  G +F+              + L I+ I ++G   ++D+  +  +        E+Q
Sbjct: 214 RLKVGGKLFV-------------RNGLPIEGI-TYGIEDDSDYCAKNIEIIKGVYVFELQ 259

Query: 276 LQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 + +     G H   N ++ LG+     A  +    AL  F   +G  +R+   +
Sbjct: 260 TPTVLYKGIRFKKPGRHNLLNAIVALGMALEANAKPEKLFSALESF---KGVQRRFSYRI 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
               F  ID+ Y  +P  + A    ++++ P+   + +AV      +   ++ F  D AE
Sbjct: 317 KNDDFVFIDD-YAHHPTEINAVFEAITEMHPNK--KVLAVF--QPHLFSRTRDFAEDFAE 371

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y      + G     L   +         ++   L   IQ    +  
Sbjct: 372 SLSKFANVLLLDIYPAREKPMEGITSEWLLQKINSQNKKLVQKS--ELITEIQKQAPE-- 427

Query: 446 VVVVKSSNSCGFYRL 460
           V++V  +   G   +
Sbjct: 428 VLIVMGAGDIGLEVV 442


>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 447

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 129/351 (36%), Gaps = 36/351 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITG+ GK+T   ++     +     A  G+    +   L +       D  
Sbjct: 101 REISAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV---LDMLDDEHHYDLW 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     LT+ + P +A I  + P HL     +E    AK  I+ G +    +
Sbjct: 158 VLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYSGAKA---V 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N +D +                 SFGK   +   +  W    +++        K ME 
Sbjct: 211 LFNREDVYT---VPHQSCQADIKCISFGKDAPS---MGNWGLIEQENT---TYLAKGMER 261

Query: 284 VHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G H   N L    +       +   +  L  F     R +  R     G 
Sbjct: 262 LLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVG- 320

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N   + A IS ++ I    +G+ + + G   +  +       +LA+ +S 
Sbjct: 321 --WINDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQGKGADF-----QELAQPVSE 370

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 371 F-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|51599068|ref|YP_073256.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia garinii PBi]
 gi|59798192|sp|Q65ZV7|MURC_BORGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51573639|gb|AAU07664.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBi]
          Length = 468

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 139/393 (35%), Gaps = 41/393 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +VLG L++             I I GS GKTTT   L I    +   
Sbjct: 92  EAKELNIPILSYSEVLGELSRKHY---------SIGIAGSHGKTTTTAFLGILFDKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +                  GI ++ +    E +       P++ ++T +   H
Sbjct: 143 PNVIVGSSVKDFG-------DNSAIAGISDIFIVETCEYKKHFLYFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD     +K++ +   I  I+SFG    +
Sbjct: 196 VDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSQINREDI-NIFSFGSRDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-----VD 311
           +FQ+      +E              +    + +H   N    L  +++          D
Sbjct: 255 NFQISNIVVKNEYFCFSFL---GLYNIELRTVLFHNILNFSAALLALNLFLESNGKSIFD 311

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                  V     G  +R      +     +D+ Y  +P  ++A    L  I    + +R
Sbjct: 312 FEEVVKRVAKNYSGIKRRSELIKEKKGVIYMDD-YAHHPREIRA---TLFGIKNFYKNKR 367

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDALPR- 420
           I +L  M      ++ F  D  EVL++ ++             +        L   + + 
Sbjct: 368 I-ILDFMPHTFTRTKEFFDDFVEVLNIADVLILHNIYLSNRENFNPDELSFKLFLNIKKI 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + + ++ + +     FI+S L+ GD+ +   + 
Sbjct: 427 NKNTYFFKDVKDSINFIKSLLISGDLFITMGAG 459


>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           bronchiseptica RB50]
 gi|62900580|sp|Q7WFS0|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
           RB50]
          Length = 510

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 119/387 (30%), Gaps = 55/387 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A     +A     +  ++AITG+ GKTT   +    + +   +    G+ +      L
Sbjct: 115 LFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAAL 174

Query: 152 TLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A    D+    + EL    L      T  + P  AV+  +   HL     ++  A AK
Sbjct: 175 IDALDQDDLPQVWVLELSSFQL----ETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAK 230

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A I   L+      +N DD     +     AL ++   SFG+   A       +     +
Sbjct: 231 ARI---LKPARLAIVNRDDPLTVAMVESLQALNVR---SFGRDVPALVGDMGLELGQGVA 284

Query: 271 WMEV----------------------QLQGKSMEVVHHG-----IGYHMAQNMLMTLGIV 303
           W+                           G  M  +         G H A N L  + + 
Sbjct: 285 WLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLA 344

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       ++         G   R     + G    I++S   N  +  AA+  L Q 
Sbjct: 345 RSLDLGWGPMLRT---LRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGLGQ- 400

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSI 422
                 + + + G   +  + S          +   +   V L G    A+   L P  +
Sbjct: 401 ------QVVLIAGGQGKGQDFSP------LVPVVRRHARAVVLIGVDGAAIGKVLEPTGV 448

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  M             GD V++
Sbjct: 449 PCVAAADMREAVRRAAELAQPGDAVLL 475


>gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae
           ATCC 23330]
          Length = 443

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 119/342 (34%), Gaps = 35/342 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITGS GKTTT  ++              G+    +     L R     D  + EL 
Sbjct: 109 KIIAITGSNGKTTTTSLVGHLCQQSGLDTVIAGNIGTPVLEAW-LERRGKPADVWVLELS 167

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +    A    I+  HL  +  + + A AK  IF G        LN D
Sbjct: 168 SFQL----ETTDCLNATAATCLNISEDHLDRYDDLLDYAHAKDRIFHG---DTVQVLNAD 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D F   +K        +T++ F  +++ D+ L       +     +  Q           
Sbjct: 221 DVFCRAMK-----RDHRTVHYFSLTQSQDYHLDAATAQLKHRQDNLLPQN-----AIPLQ 270

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N+L  L +   +  + +T +  +  F   +G   R      +     ID+S   
Sbjct: 271 GSHNAANVLAALALCESIGMERETLLCHVQTF---KGLPHRVEKVGEKNGVVFIDDSKGT 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AAI+ L +       +   + G M +    +          +       V+L G
Sbjct: 328 NVGATVAAIAGLRE-------KIWLIAGGMGKGQNFTP------LRDVLQGKAGAVFLIG 374

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +   L    + + + +T+        S+   G++V++
Sbjct: 375 VDAPQIAQDLDGCGVDLIFCDTLPQAVQQAFSAAKSGEIVLL 416


>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 130b]
          Length = 447

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 131/348 (37%), Gaps = 30/348 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITG+ GK+T   ++     +     A  G+    +   L +       D  
Sbjct: 101 REISAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV---LDMLDDEHHYDLW 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     LT+ + P +A I  + P HL     +E    AK  I+ G +    +
Sbjct: 158 VLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRGAKA---V 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N +D +                 SFGK   +   +  W    +++ + +    + +  
Sbjct: 211 LFNREDVYT---VPHQSCQADIKCISFGKDAPS---MGNWGLIEQENTIYLAKGMERLLP 264

Query: 284 VHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V   +  G H   N L    +       +   +  L  F     R +  R     G    
Sbjct: 265 VESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVG---W 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N   + A IS ++ I    +G+ + + G   +  +       +LA+ +S + +
Sbjct: 322 INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQGKGADF-----QELAQPVSEF-V 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 373 RSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 119/354 (33%), Gaps = 48/354 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIA+TGS GKTTT  +++  L    +     G+    +   +   R   + D  + EL 
Sbjct: 113 RIIAVTGSDGKTTTTTLISEILKREGRRVHLGGNIGRPLLPEIETIR---EDDVAVVELS 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P +AVIT I P HL     + E   AK  IF          LN+D
Sbjct: 170 SFQLISMRR-----SPDVAVITNITPNHLDMHKDMVEYIQAKKHIFLHQNGCSKTVLNFD 224

Query: 229 D----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +       E ++ +     +K    FG   +AD     W    EQ    +          
Sbjct: 225 NAITVPMAEEVRGQCLGFSLKEPPRFGCYTDAD--GVIWFLSGEQKHYVMHRDD------ 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N +     V  L A  +T +     F   E    R             ++
Sbjct: 277 ILLPGSHNVENYMAAAAAVWGL-AKPETILGVARSFTGVE---HRIELVRELDGVRYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLYNIS 402
           S    P+   A +   SQ       + I + G            HI  D+    ++ ++ 
Sbjct: 333 SIATTPSRTLAGLRAFSQ-------KVILIAGGY--------DKHIPFDVLGPAAVQSVK 377

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV 449
            + L G     +  A+  +      E        ++      ++    GDVV++
Sbjct: 378 CLILLGATADKIATAVEGAEGYATGEPPILRVSGLEEAVQTARAQAASGDVVLL 431


>gi|332358240|gb|EGJ36068.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK355]
          Length = 444

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 163/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGGFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK---RRFTEKIVND--TVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L            V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------TNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|326795772|ref|YP_004313592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546536|gb|ADZ91756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
          Length = 449

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 126/370 (34%), Gaps = 40/370 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  IAITGS  K+T   ++   L SI K     G+          L  +  + D+ + E
Sbjct: 108 DAPFIAITGSNAKSTVTTLVEYLLKSIGKAAIAGGNIGRP-----ALDTLSQEADYYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A +  ++  H+  +  +     AK  I+ G +       N
Sbjct: 163 LSSFQL----ETTHALKADVACMLNVSEDHMDRYDDLYSYQRAKQRIYRGCKS---AVCN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     L ++   +   T  S       D +        +  W+   ++         
Sbjct: 216 KQDILTAPLLSQDTPVRAFTTGS------PDLKEFGLLPDDKGVWLSKGVKPLYHSSEIA 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L  L I+ +L  D++    A  ++   +G   R          T I++S 
Sbjct: 270 LKGTHNLANVLAALSILDLLGVDIELPAVAQGLYEF-KGLPHRCETVAVVNGVTYINDSK 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA++ L  +        I + G     GE   +    L++ +  Y +    L
Sbjct: 329 GTNVGATLAALNGLGDLKRQN---IILIAG-----GEGKDADFSPLSQPIDKY-VKRTIL 379

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV----------KS--SNS 454
            G     +  ++           +       +S   +GD+V++          K   +  
Sbjct: 380 FGKDADLISTSISDVSVYSLVGDLSEAVALAKSDAKEGDIVLLSPACASFDMYKGFEARG 439

Query: 455 CGFYRLINLL 464
             F  L+  L
Sbjct: 440 EHFVELVKAL 449


>gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 481

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 145/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +   +  +    
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQ---VADQEHMF 262

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G   +           +       + +G+ +       IG+   +N +        L A
Sbjct: 263 YGPLSDNQI--------TTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISQEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|221232233|ref|YP_002511386.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae ATCC
           700669]
 gi|254766025|sp|B8ZLC2|MURC_STRPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|220674694|emb|CAR69267.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae ATCC
           700669]
          Length = 444

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|160933177|ref|ZP_02080566.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
 gi|156868251|gb|EDO61623.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
          Length = 492

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 129/375 (34%), Gaps = 48/375 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I A+TGS GKTTT  +++  L +  KT    G+    +   +   R     D  + EL 
Sbjct: 147 RIYAVTGSDGKTTTTTIISEMLKAAGKTVHLGGNIGCPLLPKVEEIRKD---DVAVVELS 203

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P +AV+T +AP HL     ++E   AK  I       G   LN D
Sbjct: 204 SFQLISMRK-----SPDVAVVTNLAPNHLDIHKDMQEYIDAKKNIILHQNAFGRAVLNLD 258

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     L       G  + ++   + +    L     C  ++ +  ++            
Sbjct: 259 NEITRGLAPLVR--GELSYFTRQHTTDRGVCLNGGAICHRRNGVVSRIMDVK---DIRIP 313

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N +  +  V       +   +    F   E R +  R   N       ++S  +
Sbjct: 314 GNHNVENYMAAIAAVWG-EVSPEQMRQVAESFPGVEHRAEFVR---NVDGADYYNDSIAS 369

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P         +S        + I + G     G   +  +  +  V++   +  + L G
Sbjct: 370 SPT------RTISGTLSLYSQKIILIAG-----GYDKKIPYDAMGPVVNE-KVKLLILMG 417

Query: 409 FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK----------- 450
                ++ A+       P++I +   E M+            GDVV +            
Sbjct: 418 NTADKIQSAVTKAENYDPQAIRIIRVENMEEAVETAHRLAQKGDVVSLSPASASFDLYPN 477

Query: 451 -SSNSCGFYRLINLL 464
            ++    F +L+N L
Sbjct: 478 FAARGNHFKQLVNAL 492


>gi|315613486|ref|ZP_07888394.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           ATCC 49296]
 gi|315314482|gb|EFU62526.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           ATCC 49296]
          Length = 444

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDP 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G ++++ DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAEDNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|126729249|ref|ZP_01745063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
 gi|126710239|gb|EBA09291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
          Length = 466

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 118/372 (31%), Gaps = 39/372 (10%)

Query: 86  FGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             VD+ +G   +   A   R      ++A+TGS GK+TT  ++   L++  ++    G+ 
Sbjct: 95  VPVDNDIGLFFRSFGADFDRFERPPRVVAVTGSNGKSTTSALIHHILTASVRSSQLAGNI 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
              +         P D    + EL          L   + P +AV T ++P HL    G+
Sbjct: 155 GRGVLDIDP----PEDGGVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGL 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRK 262
               +AK  +F          +  D+   + L  + +       +      K        
Sbjct: 207 GGYFAAKRRLFAEGGPDRC-VIGVDEVEGQFLAGQMAEGRADDRVIRVATHK---LTGPG 262

Query: 263 WKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           W   + + ++    +G+      +  V    G H  QN          L          L
Sbjct: 263 WMVFARKGFLSEWRKGRQIASVDLRDVAGLPGAHNHQNACAAWAACRSLGLGPREIEAGL 322

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F     R +R      QG    +++S   N  S   A+    +I     G        
Sbjct: 323 RSFAGLPHRSQRI---AEQGGVIFVNDSKATNVDSALKALLAFDRIRWVCGGL------- 372

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E G  +            L +++  ++ G         L   +      TMD      
Sbjct: 373 MKEGGLAALE--------PGLNHVAKAYVIGREPEGFALQL-GGVEAELCGTMDQAVARA 423

Query: 438 QSSLVDGDVVVV 449
                 GDVV++
Sbjct: 424 AEDAQPGDVVLL 435


>gi|118463520|ref|YP_881541.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium 104]
 gi|166224703|sp|A0QF53|MURC_MYCA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118164807|gb|ABK65704.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium avium 104]
          Length = 496

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 147/430 (34%), Gaps = 57/430 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL  L             T + +TG+ GKTTT  M
Sbjct: 82  AAIPKTNPELVEARRRGIPVILRPAVLAKLMD---------GRTTLMVTGTHGKTTTTSM 132

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L +AL       ++A  G                   D  + E   S    + +      
Sbjct: 133 LIVALQHCGRDPSFAVGGEMGE-----AGTNAHHGSGDCFVAEADESDGSLLEYT----- 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AV+T I   HL  +   +   +      E L   G + +  DD     L  ++  LG
Sbjct: 183 PDVAVVTNIETDHLDFYGSADAYVAVFDAFVERLAPGGALVVCVDDPGAAALARRTAELG 242

Query: 244 IKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHM 292
           I+ +  +G   +            L  W+Q   ++  +++L G+      +     G HM
Sbjct: 243 IR-VLRYGSGPHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHM 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
           A N L  L     + A  +  +  L+ F   EG  +R+      G         + + Y 
Sbjct: 302 ALNALGALLAAIEIGAPTEAVLDGLAGF---EGVRRRFELVGTAGGSAPSSTVRVFDDYA 358

Query: 348 ANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLS 397
            +P  + A ++ +   +   G GR IAV      +   +++F  +            VL 
Sbjct: 359 HHPTEIAATLAAVRTLLEQSGGGRSIAVF--QPHLYSRTKAFAEEFGHALDAADEVFVLD 416

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +Y      L+G    ++ + +  S+ V Y          + ++   GDV+V   +     
Sbjct: 417 VYGAREQPLAGVSGASVAEHV--SVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAGDVTL 474

Query: 458 --YRLINLLL 465
               ++  L 
Sbjct: 475 LGPEIVTALR 484


>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 447

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 129/351 (36%), Gaps = 36/351 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITG+ GK+T   ++     +     A  G+    +   L +       D  
Sbjct: 101 REISAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV---LDMLDDEHHYDLW 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     LT+ + P +A I  + P HL     +E    AK  I+ G +    +
Sbjct: 158 VLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRGAKA---V 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N +D +                 SFGK   +   +  W    +++        K ME 
Sbjct: 211 LFNREDVYT---VPHQSCQADIKCISFGKDAPS---MGNWGLIEQENT---TYLAKGMER 261

Query: 284 VHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G H   N L    +       +   +  L  F     R +  R     G 
Sbjct: 262 LLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVG- 320

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N   + A IS ++ I    +G+ + + G   +  +       +LA+ +S 
Sbjct: 321 --WINDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQGKGADF-----QELAQPVSE 370

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 371 F-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|310829359|ref|YP_003961716.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
 gi|308741093|gb|ADO38753.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
          Length = 471

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 136/439 (30%), Gaps = 53/439 (12%)

Query: 53  GHDF--ILHAVQKGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD+  I            ++ D         L +P+    D LG L+            
Sbjct: 64  GHDYNNIPEDTDMVVYSAAIHEDNPDMVRAKDLDLPIVERSDYLGLLSLAFD-------- 115

Query: 109 TIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I + G+ GKTTT  M+   L  +       IG     IG    L     D D+ + E 
Sbjct: 116 KTIGVAGTHGKTTTSSMIAALLHYADFDPSVSIGGKLPEIGGNACLG----DSDYFVIE- 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
                 E          +I +IT I   HL  F  G+ +I  +  +    L   G +   
Sbjct: 171 ----SCEYVDSFLKTSHYIGIITNIEEDHLDYFTEGLPQIKESFHKFGAILPPDGLMIAY 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVV- 284
            D                  + ++G  K  D+     +     +   +     +      
Sbjct: 227 GDSQDVLDTVENLRC----PVTTYGFEKKNDWTAHNIQYDDMGNPSFDAYHHNEFYGHFN 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     L  D  T  K L  FH   G  +R+          + ++
Sbjct: 283 MKIPGEHNVLNALSCIACSEFLGIDEATVQKTLDNFH---GAKRRFEFRGEVNGINVYED 339

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  +K  I        H       +          +     +  +  +  +   +
Sbjct: 340 -YAHHPTELKVVIDACLN---HAHNNLWVIF--QPHTYSRTFYLFDEFVDAFAKADFIIL 393

Query: 402 SHVWL--SGFHVLALKDALPRSI-HVHYSET-----MDGLFLFIQSSLVDGDVVVVKSS- 452
           + ++    G       + L + I   ++  T      + +  ++  +L   D+V+V  S 
Sbjct: 394 NDIYSDREGNDWDIYSEDLAKRIKEKYHIPTIVMSEFNTIVKYLSDNLESDDLVLVAGSQ 453

Query: 453 --NSCGFYRLINLLLEEFP 469
             N    Y L++ L E++ 
Sbjct: 454 TINKVA-YMLVDALKEKYE 471


>gi|116618590|ref|YP_818961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271210|sp|Q03W34|MURD_LEUMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116097437|gb|ABJ62588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 449

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 113/349 (32%), Gaps = 35/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A       +IA+TGS GKTTT  ++   L +  +     G+    + V   +  +  + D
Sbjct: 105 ALSTFNGRLIAVTGSNGKTTTTSLIRDMLKADGQNVITAGNIG--VPVSEVVFDLTRE-D 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +      ++P IA++T I   HL          +AK  I        
Sbjct: 162 TLLLELSSFQLLGL----PDIQPDIALVTNIFSNHLDYHKTRANYVAAKFRITRHQNANQ 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D    E  K ++ A     +  F ++K        +        + +  +    
Sbjct: 218 YLVLNADGQDTEKFKNETEA----QVLEFSRTKQ------HFPVAFSNGNLTLTDEIVMP 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  +N+L  + + ++         + L  F        R +     G    
Sbjct: 268 TKDIKLVGPHNQENILAAVTVANLAGVSKPAIREVLKTFSGVA---HRLQYLFTAGDVKY 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   +  + + A+                 +G   E G+  +        + +L N+
Sbjct: 325 YNDSKATDIEATQTALDSFD--------CPTIWIGGGLERGDDLERL------LPNLKNV 370

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G     +      +   V     ++            GDVV++
Sbjct: 371 KAVIAVGETQQKIVTLAREAGKPVIAVTDVEHAAPVAVQLASPGDVVLL 419


>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
 gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
          Length = 437

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 123/343 (35%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +   T    G+          L  +    D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMAKAAGLTVGVGGNIGVP-----ALDLLEQGADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDNAE---LAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++       + +FG  +    Q    +    ++W+    Q         
Sbjct: 215 RDD-------QETFPDTETPLVTFGSDE----QAYGLEADGNRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   ++ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAADVDYHKSLNA---LKTYTGLTHRCQVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       + +P        +TM+ +   I S L  GD+V++
Sbjct: 370 FGADGD---EFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409


>gi|313114779|ref|ZP_07800279.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622834|gb|EFQ06289.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 460

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 133/363 (36%), Gaps = 41/363 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
              R     I ++G+ GKTTT  M+T AL    +   A IG     I       +     
Sbjct: 110 YVSRLYKQSICVSGTHGKTTTTSMITTALELAGRDPSAVIGGKLPLINGYGKAGKG---- 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E       E       + P+++V+  I   HL  +  + E+  A       L   
Sbjct: 166 DDIVIE-----SCEFAETFLKLTPYLSVVLNIDNDHLDYYGSMGELKFAFKRF--ALMTK 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-- 278
             IF N DD     +         + + +FG   + D+Q     +     + E  L+   
Sbjct: 219 FMIFANADDKNTMDVMYTL----DRRVRTFGIQNDGDYQALNVNEYKPG-FFEFDLKEWN 273

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +  +     GYH   N L    +   +   V+    A   F   +G G+R+     + 
Sbjct: 274 KVTGHIRLAVPGYHNIYNALAMCAVCRFVGLTVEQCADAALNF---KGAGRRFEV-YGEC 329

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+ + Y  +P  ++A ++   ++   G  R IAV          ++    D  +VL 
Sbjct: 330 NGALVVDDYAHHPTELRATLTTAKEM---GYKRLIAV--HQPFTYSRTKMLFNDFVDVLK 384

Query: 398 LYNISHV-WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + +I+ +  + G             L   +P S+ V+   +++    +++ +  +GD+V+
Sbjct: 385 IPDITVLTPIMGSREPNDPTITSAKLAAQIPGSVLVN---SLEEAAEWVKQNAREGDLVI 441

Query: 449 VKS 451
              
Sbjct: 442 TLG 444


>gi|229496580|ref|ZP_04390294.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316477|gb|EEN82396.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
          Length = 464

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 146/409 (35%), Gaps = 54/409 (13%)

Query: 87  GVDDVLGALNKLAVAARLRSKAT-----------IIAITGSVGKTTTKEMLTIALSSIK- 134
            V D LG L           K +           ++A+ G+ GKTTT  +L   L   + 
Sbjct: 81  AVPDHLGELQYFRHEGYRVVKRSEALGAAVQDDLLLAVAGTHGKTTTSSLLAHLLHHSRV 140

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           KT A +G  + +    L L  +   V   + E       E       + PHIA++T++ P
Sbjct: 141 KTNAFLGGISANYQSNLLLDSVSPYV---VVEA-----DEYDRSFLHLYPHIAIVTSMDP 192

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL  +   E      A+    ++  GT+       + + + +          Y++   +
Sbjct: 193 DHLDIYGTPEGYREGFAQFIRQVKPGGTLI------YKKGITSTPETQEEVKCYTYAMGE 246

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG---YHMAQNMLMTLGIVSILTADVD 311
            AD           + + +     + +E  +  +G       +N    L    +L     
Sbjct: 247 TADSYSDNIHFDEGRLFFDWHFPERGIEFKNLELGVPITINVENATAALTAACLLGVSET 306

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               AL+ F    G  +R+   L+     LID+ Y  +P  ++A+I+ +  + PH +   
Sbjct: 307 ELRSALASF---RGIHRRFERLLDTPNRVLIDD-YAHHPEELRASIASVRALYPHDKITG 362

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSI 422
           I        +   +Q F+ + AEVLS          Y      + G     + D +  + 
Sbjct: 363 IF----QPHLYSRTQDFYPEFAEVLSELDEVILLPIYPAREEPIPGVSSSLILDKVSTAE 418

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI----NLLLEE 467
                   + L   ++       V++   + +    R++    ++LLE 
Sbjct: 419 KSLIP--REELIERLRERENLNRVILTLGAGNI--DRIVAPLRDMLLER 463


>gi|148988565|ref|ZP_01819998.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP6-BS73]
 gi|168493422|ref|ZP_02717565.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC3059-06]
 gi|225854964|ref|YP_002736476.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           JJA]
 gi|254766026|sp|C1CFA5|MURC_STRZJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147925766|gb|EDK76841.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP6-BS73]
 gi|183576266|gb|EDT96794.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC3059-06]
 gi|225723347|gb|ACO19200.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae JJA]
          Length = 444

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|260910912|ref|ZP_05917554.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634969|gb|EEX53017.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 463

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 145/428 (33%), Gaps = 43/428 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +     +VV T  +         V+  ++      +  V   L      +   G+
Sbjct: 63  IPQACKNAKSCLVVYTPAIPEDHKEL--VYFRENGFEIQKRAQVLGTLTRALKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
             KTTT  M    +        A +G  + + G    L+      ++ + E       E 
Sbjct: 121 HAKTTTSCMCAHIMHQSHPDCNAFLGGISKNYGTNYILS---PQSEYVVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +       +++ G + +       + L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYMESFRHYTTLIQEGGALII------KKGL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH-MAQ 294
             K +      +Y +  ++  DF     K  +     +     +S++ V  G       +
Sbjct: 227 ALKPNVKPGVKVYQYSLNEG-DFHAENVKIDNGNITFDFVSPIESVKNVTLGHPVPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +   + +     +  +H  +   +R+   +       + + Y  +P  + 
Sbjct: 286 NAVAAMAMAQLNGCNAEELRYGIKTYHGVD---RRFDFKIKTPNLVFLSD-YAHHPNEI- 340

Query: 355 AAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHV 404
             +     I    + R+I AV      +   ++ F+ + A+ LSL         Y     
Sbjct: 341 --LQSARSIRQLYKDRKITAVF--QPHLYTRTRDFYKEFAKALSLLNEVILCDIYPAREQ 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--RLIN 462
            + G     + D L + +      + + +    +    D DV+V   +     Y  ++  
Sbjct: 397 PIKGVSSKLIYDNLEKGVEKSMI-SKEDVLKLARE--RDFDVLVFLGAGDLDSYAPQVAK 453

Query: 463 LLLEEFPA 470
           +L E+   
Sbjct: 454 ILEEKAKQ 461


>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Paris]
 gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Paris]
          Length = 447

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 129/351 (36%), Gaps = 36/351 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITG+ GK+T   ++     +     A  G+    +   L +       D  
Sbjct: 101 REISAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV---LDMLDDEHHYDLW 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     LT+ + P +A I  + P HL     +E    AK  I+ G +    +
Sbjct: 158 VLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRGAKA---V 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N +D +                 SFGK   +   +  W    +++        K ME 
Sbjct: 211 LFNREDVYT---VPHQSCQTDIKCISFGKDAPS---MGNWGLIEQENT---TYLAKGMER 261

Query: 284 VHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G H   N L    +       +   +  L  F     R +  R     G 
Sbjct: 262 LLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVG- 320

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N   + A IS ++ I    +G+ + + G   +  +       +LA+ +S 
Sbjct: 321 --WINDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQGKGADF-----QELAQPVSE 370

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 371 F-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|227431980|ref|ZP_03914000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352265|gb|EEJ42471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 449

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 114/349 (32%), Gaps = 35/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A       +IA+TGS GKTTT  ++   L +  +     G+    + V   +  +  + D
Sbjct: 105 ALSTFNGRLIAVTGSNGKTTTTSLIRDMLKADGQNVITAGNIG--VPVSEVVFDLTRE-D 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +      ++P IA++T I   HL          +AK  I        
Sbjct: 162 TLLLELSSFQLLGL----PDIQPDIALVTNIFSNHLDYHKTRANYVAAKFHITRHQNANQ 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D    E  K ++ A     +  F ++K        +        + +  +    
Sbjct: 218 YLVLNADGQDTEKFKNETEA----QVLEFSRTKQ------HFPVAFSNGNLTLTDEIVMP 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  +N+L  + + ++         + L  F        R +     G    
Sbjct: 268 TKDIKLVGPHNQENILAAVTVANLAGVSKPAIREVLKTFSGVA---HRLQYLFTVGDVKY 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   +  + + A+                 +G   E G+  +        + +L N+
Sbjct: 325 YNDSKATDIEATQTALDSFD--------CPTIWIGGGLERGDDLERL------LPNLKNV 370

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G     +     ++   V     ++            GDVV++
Sbjct: 371 KAVIAVGETQQKIVTLARKAGKPVIAVTDVEHAASVAVQLASPGDVVLL 419


>gi|225857146|ref|YP_002738657.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           P1031]
 gi|254766027|sp|C1CLL9|MURC_STRZP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225725082|gb|ACO20934.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           P1031]
          Length = 444

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLIRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|171911129|ref|ZP_02926599.1| UDP-N-acetylmuramate--L-alanine ligase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 460

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 132/396 (33%), Gaps = 37/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      V ++    +P   + ++L           +        ++G+ GKTTT  +
Sbjct: 73  NAVSRGNPEVEALLECKLPYTSLPELLK--------WEVMQGKRNFVVSGTHGKTTTTSI 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR-- 183
           LT  L    +     G     +     +     + ++ + E            +  +   
Sbjct: 125 LTWLLEHAGRN---PGYLIGGVPDNFDVGARYTESEYFVIEGDEYDTAFFDKRSKFLHYL 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   ++  I   H   F+ +++I    + +   + + G +FLN D+     L     A  
Sbjct: 182 PEAVIVNNIEFDHADIFNTLDDILLTFSRLLRVVPRNGKVFLNGDEGNCRKLLEACPAPA 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    + G  ++ + +LR      E +  E+      +      +G   A+N  M + + 
Sbjct: 242 V----TVGTGEDCEVRLRVTSAAPEHTDFELN----GVAFRLPMVGEFNARNAAMAICVA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                       AL  F   +    R +    Q     I + +  +P +++  +  L Q 
Sbjct: 294 RFAGLTDHEIRAALLEFRGVK----RRQTERGQVHGITIIDDFGHHPTAIRETLRGLRQK 349

Query: 364 SPHGEGRRIAVLGDMCEM-------GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            PH   R  A+              GEL  +       +++  N+     +G  +     
Sbjct: 350 YPH--SRLWALFEPRSNTSRRNTLQGELIDALKEADGSIIAAVNMPEKVPAGQLLDVDAV 407

Query: 417 ALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV 449
           A   S      ++   +D +   ++    +GDVV+V
Sbjct: 408 AAAVSASGRPSYHERNVDAIIERLKPLAKEGDVVIV 443


>gi|293365802|ref|ZP_06612508.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|307703329|ref|ZP_07640273.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|291315735|gb|EFE56182.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|307623105|gb|EFO02098.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus oralis ATCC
           35037]
          Length = 444

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 136/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDP 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G +++  DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 450

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 126/366 (34%), Gaps = 47/366 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  LGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E+    L  I+      +P I+ I  I P HL      E     K  IF
Sbjct: 155 ---AEGDFIVAEISSFQLETIKEF----KPKISCIINITPDHLDRHKTFENYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E   +     LNYDD     LK K+       ++ F +       L       + S   +
Sbjct: 208 ENQREDEYTVLNYDDPVTWSLKNKAKC----RVFPFSRKS----LLENGAYIKDGSIY-I 258

Query: 275 QLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + G + +++     +  G H  +N L    +  +     D     L  F   E    R 
Sbjct: 259 SVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVE---HRI 315

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQS 387
                       ++S   NP +   AI  L           + + G      E  E  ++
Sbjct: 316 EFVDEINGVKFYNDSKGTNPDASIKAIQALKT-------PIVLIAGGYDKGSEFDEFVKA 368

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD 443
           F+  +           + L G     ++D   +       + ++ T++        S  +
Sbjct: 369 FNGKV---------KKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKE 419

Query: 444 GDVVVV 449
           GD V++
Sbjct: 420 GDSVLL 425


>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226722951|sp|B0K8K5|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 454

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 126/366 (34%), Gaps = 47/366 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  LGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E+    L  I+      +P I+ I  I P HL      E     K  IF
Sbjct: 155 ---AEGDFIVAEISSFQLETIKEF----KPKISCIINITPDHLDRHKTFENYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E   +     LNYDD     LK K+       ++ F +       L       + S   +
Sbjct: 208 ENQREDEYTVLNYDDPVTWSLKNKAKC----RVFPFSRKS----LLENGAYIKDGSIY-I 258

Query: 275 QLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + G + +++     +  G H  +N L    +  +     D     L  F   E    R 
Sbjct: 259 SVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVE---HRI 315

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQS 387
                       ++S   NP +   AI  L           + + G      E  E  ++
Sbjct: 316 EFVDEINGVKFYNDSKGTNPDASIKAIQALKT-------PIVLIAGGYDKGSEFDEFVKA 368

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD 443
           F+  +           + L G     ++D   +       + ++ T++        S  +
Sbjct: 369 FNGKV---------KKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKE 419

Query: 444 GDVVVV 449
           GD V++
Sbjct: 420 GDSVLL 425


>gi|254430681|ref|ZP_05044384.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
 gi|197625134|gb|EDY37693.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
          Length = 478

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 141/412 (34%), Gaps = 54/412 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      +     + + +    DVL AL +             IA+ GS GKTTT  +
Sbjct: 82  SAVPETNPELKEARRVGLKICHRSDVLAALIQNQA---------SIAVAGSHGKTTTSSL 132

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L++      A IG      G      +        + E   S    ++F     +P
Sbjct: 133 IATLLAATGHDPTAVIGGIVPAFGSNGRSGKG----RLLVAEADESDGSLVKF-----KP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V+T +   H  ++  +E +      +     ++G +  N+D +              
Sbjct: 184 GLGVLTNVELDHTDHYPDLEALI---GTLRRFAGRSGRLLANHDCAILR------EHFDA 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           +  +S   ++  DF     ++  + +  E   QG+ +  +     G H   N +  L   
Sbjct: 235 QHWWSITTTEGIDFAAVALEERGDGTTAEFYEQGQPVGRICLPLPGRHNLSNAVAALAAC 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +         +A++   P  GR   +R   N     L+ + Y  +P+ + A + +   +
Sbjct: 295 RLEGVAFAELQRAVAGLKP-PGRRFDFRGIWNG---RLVVDDYAHHPSEVAATLGMAQLM 350

Query: 364 S-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLS 407
                   P    R +AV          +  F    AE L          LY      + 
Sbjct: 351 VGSGRSPLPQVPRRLVAVF--QPHRYSRTAQFLPGFAEALRNAHTVLIAPLYAAGEAPID 408

Query: 408 GFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           G    AL +A+     ++ V  + ++D L + +    V+GD+V+   +    
Sbjct: 409 GVSSQALAEAIRALDPTLPVMVASSLDELAVQVAGCSVEGDLVLAMGAGDVN 460


>gi|315498851|ref|YP_004087655.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Asticcacaulis
           excentricus CB 48]
 gi|315416863|gb|ADU13504.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Asticcacaulis
           excentricus CB 48]
          Length = 488

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 115/332 (34%), Gaps = 25/332 (7%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+    G+ + + +   ++ +       V   +    +   A   + +   +AITG+ G
Sbjct: 87  DALMLSPGVPLTHPEPHWTVKAAQEANVPVIGDIELFARTLNALPEKQRPKTVAITGTNG 146

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++   L +  +     G+    +   L L  M     + + E     L     L
Sbjct: 147 KSTTTALIGHILKAAGRDAHIGGNIGIGV---LDLPEMHAGTIY-VIETSSYQLD----L 198

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T   RP +AV+   +P HL     ++    AK  IF       T  +  DD + + +  +
Sbjct: 199 TQTFRPDVAVLMNFSPDHLDRHGDMDGYIKAKKRIFLNQTAHETAVIGTDDEWSQAVVTE 258

Query: 239 SHALGIKTIY------SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             A     +       + G+   A      +   ++++   + L+      V    G H 
Sbjct: 259 MTAHHSVNLIPISSRRTLGRGVYA-LNGVIYDATTDRARQIIDLK-----TVRTLTGRHN 312

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN          L   V+  +  +  F    G   R +          I++S   N  +
Sbjct: 313 WQNACAAYSACRALGLTVEVIVAGIRSF---PGLDHRMQEIGRIKNVRFINDSKATNADA 369

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            + A+S          GR  A  G + E+ +L
Sbjct: 370 ARQAMSSYDSFYWIAGGRAKA--GGIEELKDL 399


>gi|30316070|sp|Q8RDQ1|MURD_FUSNN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 432

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 132/352 (37%), Gaps = 47/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+         G+    +     +     D+DF   E
Sbjct: 90  KTKIIAITGTNGKSTTTAKISDMLNHAGYKATYAGNIGRSLSE---VLLKEKDLDFISLE 146

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P I++I  I P H+  +   +E  + K  I +   +      N
Sbjct: 147 LSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIEN 202

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E ++ ++  +  K I S  K K AD  +   K   ++                 
Sbjct: 203 IDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVENDKIYHDKDD-------IIDVDKLS 251

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L  +    IL  D +   + L +  P E    R     N G    I++S 
Sbjct: 252 LKGIHNLENTLFMVATAEILKLDREKLKEFLMIATPLE---HRTELFFNYGKLKFINDSK 308

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S K AI              I + G   +  +L+      LAE++   NI  V+L
Sbjct: 309 ATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEVYL 354

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
            G     +++ L +   V Y +      + I++SL D          +V+++
Sbjct: 355 IGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMRKRFTKDSDEVILL 403


>gi|327470404|gb|EGF15860.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK330]
          Length = 444

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 162/490 (33%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDYEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGGFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R  V+  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSVNAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + +K+       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSKA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  +    + S +     +  +Y 
Sbjct: 321 TEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFADALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDNGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 507

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 150/469 (31%), Gaps = 70/469 (14%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + I+I+S+ + P   F   KG  +   D++  A+ +GA + +           + IP   
Sbjct: 33  SHITINSKDVVPGTFFVC-KGASFK-EDYLKSAIAQGAIVYLSQQKY----DDVDIPYII 86

Query: 88  VDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK----------- 134
           V+D+  A  L             T + ITG+ GKTT   ++   L               
Sbjct: 87  VNDIRKAMALAARWFFGNPGDNMTKVGITGTKGKTTVTFVMKDILDKYTDNRCSAFSTHE 146

Query: 135 -----KTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                K +    +    I +       +       I E+    +   R   +     + V
Sbjct: 147 IDVGTKVFETTLTTPEPIELQTYFDMAVDEGCTHCIMEVSSQAMKMNRI--YGEHYKVGV 204

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T I   H+S    + +E+    K      L++   + L  D  +FE +  +      K 
Sbjct: 205 FTNIDYDHISPTEHASMEDYLGCKVSF---LKQCDNVVLYSDTRYFETIYNEVR---DKH 258

Query: 247 IYSFG---------------KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +  +G                 K+ DF  +         S+ E+   G++     + IG 
Sbjct: 259 VVVYGSKESIEKLMSRDDDFFEKDTDFASIHNEDLTDHNSYFELIYGGENRAYNTNLIGD 318

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +  +N++  +    ++    D      S        G R +    +    +ID  Y  N 
Sbjct: 319 YNVENIVAAIISSLLIGIPNDQI---RSSIRDVYVPG-RLQVYHWKDRTFMID--YAHNY 372

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM     ++ +     + + I V+      GE  +    D+  +   Y    V      
Sbjct: 373 ISMYRLYEMVKKT---MKPKSITVV--FGCGGERYKKRREDMGRLAEQYADKVVLTMEDP 427

Query: 411 VLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                + + + I  + ++        +            G++V+   K 
Sbjct: 428 GFESCEEICKEIKQYITKPCYIIVDREQALTRALDEAQPGELVITTGKG 476


>gi|288800651|ref|ZP_06406108.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332112|gb|EFC70593.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 459

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 145/424 (34%), Gaps = 44/424 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I HA +     +VV T  + S     I  F  ++      +  V   L      I + 
Sbjct: 61  DEIPHACKNPLNTLVVYTPAIPSTHKELI--FFRENNFDIQKRAQVLGTLTRTHKGICVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKT+T  M    L        A +G  +   G    L++   D ++ + E       
Sbjct: 119 GTHGKTSTSTMCAHILHQSNVDCNAFLGGISKDYGTNYILSK---DSEYVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H +RP+  VIT+  P HL  +   E    +       ++  G + +       +
Sbjct: 171 EFDRSFHWLRPYATVITSTDPDHLDIYGTKEAYLESFKHYTTLIQPGGALII------KK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHM 292
            L+     +    +Y + +++  DF     K  + +   +     ++   +         
Sbjct: 225 GLEMTPAVVDGVKVYEYSENEG-DFHAENIKIENGEITFDFISPIENVYNIQLGQPVPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  I     D     +S +H   G  +R+   +      L+ + Y  +P  
Sbjct: 284 IENGVAAMALAQICGCTADELRYGMSSYH---GVVRRFDFKIKNDKHVLLSD-YAHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           +  +   L Q+  +   +  A+      +   ++ F+ D AE LSL         Y    
Sbjct: 340 IFQSARSLKQL--YNNRKITAIF--QPHLYSRTKDFYKDFAEALSLLDEVILCDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFY 458
           + + G     + D L   +        + L    +    D DV+V+  +           
Sbjct: 396 LPIEGVTSKLIYDCLKDGVQKQMI-HKEELLDLARE--RDFDVLVILGAGDIESYMPQLT 452

Query: 459 RLIN 462
           ++I 
Sbjct: 453 KIIE 456


>gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
          Length = 461

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 114/379 (30%), Gaps = 37/379 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV     +                  IIAITGS GK+TT  ++   L    + 
Sbjct: 83  AAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAITGSNGKSTTSALVHHILKHAGRP 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G+    +          +D +  + EL        R LT    P +AV T ++P H
Sbjct: 143 TQLAGNIGRGVLDI----EPAIDGEVVVLELSSYQTDLARNLT----PDVAVFTNLSPDH 194

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKN 255
           L   +G+    +AK  +F          +  D+     L  + S       +      + 
Sbjct: 195 LDRHAGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGRFLAGQLSEGAADDRVIRVSVDRK 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  W+  + + ++     GK      +  +    G H  QN          L    
Sbjct: 254 --LTGLGWQVFARKGFLSEYRGGKQIGSIDLRSITGLPGAHNHQNACAAYAACRTLGFAP 311

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  + FH   G   R +     G    +++S   N  S   A++    I     G 
Sbjct: 312 KII---EAAFHSFGGLPHRSQTVGEAGGVRFVNDSKATNVDSAVKALAAFKNIRWICGG- 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                          +     L+E L    +   ++ G        A+   +      TM
Sbjct: 368 ------------LEKEGGLGSLSEPLET--VRKAYVIGREAAQF--AMKLGVEAEVCGTM 411

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           D       +    GDVV++
Sbjct: 412 DVAVARAINDAEAGDVVLL 430


>gi|227543923|ref|ZP_03973972.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           CF48-3A]
 gi|300909671|ref|ZP_07127132.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           SD2112]
 gi|227186100|gb|EEI66171.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           CF48-3A]
 gi|300893536|gb|EFK86895.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           SD2112]
          Length = 434

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 135/387 (34%), Gaps = 52/387 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L+            T I I G+ GKT+T  +L+  L++++ T   IG          
Sbjct: 87  LKILSYPEAVENEVKNHTSIGIAGAHGKTSTTALLSHVLAAVEPTSYLIGDG-------- 138

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            + +   D  F +FE        + +      P  A++T +   H   F+ + ++  +  
Sbjct: 139 -VGKGNADARFFVFEADEYRDHFLAY-----HPDYAIMTNVDFDHPDYFNDLADVRDSFE 192

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + +++   IF   DD     L           +Y +G + + DF+    ++  E S 
Sbjct: 193 TYGKQVQR--AIFAWGDDPSLRNLNVDV------PVYYYGTNPDDDFRAENIQRTPEGST 244

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +   + + +     H  G H   N L  L +  +   ++D   + L+ F   +      
Sbjct: 245 YDAYFRDQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVK-----R 299

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R +        I + Y  +P+ +KA I    Q  P  E   IAV            ++  
Sbjct: 300 RFSETDIADITIIDDYAHHPSEIKATIDAARQKYPDRE--VIAVF--QPHTYSRLAAYID 355

Query: 391 DLAEVLSLYN---ISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             AE LS  +   ++ ++      +G    A  +           +TMD L  +      
Sbjct: 356 GFAESLSRADKTFVTPIFGSIRENAGNVSSADLEQRIDGSEGIDMDTMDKLLQY------ 409

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
              VVV   +        +    E++ 
Sbjct: 410 HNAVVVFMGAGD------VEKYEEKYK 430


>gi|284039600|ref|YP_003389530.1| UDP-N-acetylmuramate/alanine ligase [Spirosoma linguale DSM 74]
 gi|283818893|gb|ADB40731.1| UDP-N-acetylmuramate/alanine ligase [Spirosoma linguale DSM 74]
          Length = 461

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 130/383 (33%), Gaps = 35/383 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   L  + T I + G+ GKTTT  M+   L       A       +      L   
Sbjct: 102 RSQVLGLLAGQMTTIGVAGTHGKTTTSSMVAHILRDSGVNCAAFLGGITNNYGTNFLLNE 161

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           P D    +  +  +   +  FLT  + P  A++T+    HL  +   + +  +  +    
Sbjct: 162 PADDLKSVVCVVEADEFDRSFLT--LFPKYAIVTSTDADHLDIYGAHDAVLESFGKFVGQ 219

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +E  G +F+         L  K+ A     +  +   +  D+  +  +  +     ++  
Sbjct: 220 IEPDGVLFM----KKGLSLTDKTQAA----VRPYSLKEG-DYYSQNLRIENASFVFDLVY 270

Query: 277 QGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G  +  +H    G+H  +N +    +   +    +      S      G  +R+   L 
Sbjct: 271 PGGVIADIHLLVPGFHNVENAVAAGAVALEVGVSPEAI---RSALTSYRGVRRRFEYILK 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                 ID+ Y  +PA ++A +S +  + P+ +    A+      +   ++ F    AE 
Sbjct: 328 TDSTVFIDD-YAHHPAEVEAFLSSVKALYPNRD--ITAIF--QPHLFSRTRDFADGFAES 382

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                   +L +Y    + + G     +   +     +    T   L   ++       +
Sbjct: 383 LSLADHVILLDIYPARELPMEGVTSDLIFRNIHSKTKIKC--TKAELVNVLREMKPS--L 438

Query: 447 VVVKSSNSC--GFYRLINLLLEE 467
           +V   +         +  LL ++
Sbjct: 439 LVTIGAGDIDQQLETIKTLLKDQ 461


>gi|294783653|ref|ZP_06748977.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480531|gb|EFG28308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 432

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 133/352 (37%), Gaps = 41/352 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  IIAITG+ GK+TT   ++  L+         G+    +           D+DF 
Sbjct: 87  KNLKTKIIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIGRSLSEA---LLHEKDLDFV 143

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  +       RP+I++I  + P H+  ++  +E    K  I +  ++    
Sbjct: 144 SLELSSFQLENVENF----RPYISMIINMGPDHIERYNSFDEYYDTKFNIAKNQDENQYF 199

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD     ++ ++  +  K I S  KSK A+  +   K    + ++           
Sbjct: 200 IENIDDV---EIEKRAKQIKAKRI-SVSKSKEANVYVEDNKIYVGKDFI-------IEAD 248

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L  +    IL  D +   + L V  P E    R     N G    I+
Sbjct: 249 KLSLKGIHNLENTLFMVATAEILNIDREKLKEFLMVATPLE---HRTELFFNYGDVKFIN 305

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S K AI              I + G   +  +L+      LAE++   NI  
Sbjct: 306 DSKATNVDSTKFAIQA--------NKDSILICGGYDKGVDLAP-----LAEMIKE-NIKE 351

Query: 404 VWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD--GDVVVV 449
           V+L G     ++  L +    +  +H  ET++   L ++        +V+++
Sbjct: 352 VYLIGVIADKIETELKKVGYEASKIHKLETVENSLLDMKKRFTKDSDEVILL 403


>gi|253581419|ref|ZP_04858645.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium varium ATCC
           27725]
 gi|251836783|gb|EES65317.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium varium ATCC
           27725]
          Length = 452

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 152/418 (36%), Gaps = 40/418 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG  +V+ ++ +           + V++ +  + +  + A L +  T IA+ G+ GKTTT
Sbjct: 60  KGCDMVIASSAIKYDNPEYK---YAVENGIKIVKRGELLAMLLNDETGIAVAGTHGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M++  + ++  T          I V   L  +  +   G  E  ++   E       +
Sbjct: 117 SSMMSSVMLNLDPT----------IVVGGILPEIGSNAKPGKSEYFVAEADESDNSFLYM 166

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P  AVIT I   HL     +E I  + ++  +  +    + +  D    E LK      
Sbjct: 167 KPSYAVITNIEEDHLDTHGCLENINKSFSQFIDQTKNE--VVVCID---CENLKKLVEKK 221

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             + I ++    K AD         + ++   V ++GK +        G+H   N L  +
Sbjct: 222 EKEKIVTYSINDKEADIFAYDINVENGKTSYNVAIKGKDVGRYTISIPGHHNILNSLPVI 281

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                   D +   KAL  F   + R     C  ++G   +  + Y  +P  ++A +   
Sbjct: 282 YYAKKFGVDEEFLKKALENFKGSKRRYDVLYCNEDKGIKII--DDYAHHPTEIRATLQGA 339

Query: 361 SQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                        PH   R   +L +  +  E ++        +L +Y+       G  V
Sbjct: 340 KSIEHEKLTIIFQPHRYSRVKFLLQNFTDAFEGAEE-----VLILPIYSAGEKDEFGVTV 394

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             L + L ++  V   +  + +   + +     +V +   +      ++ + + ++  
Sbjct: 395 EDLGNVL-KNKKVIIEKNSEKIDERVLN-CQGHEVFMFMGAGDI--SKVAHRIADKLE 448


>gi|169834096|ref|YP_001694928.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229620426|sp|B1ICU3|MURC_STRPI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168996598|gb|ACA37210.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 444

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 445

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 128/352 (36%), Gaps = 40/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIA+TGS GKTTT  +L   L     +    G+  N       +A+ P +  + + 
Sbjct: 99  TQAKIIAVTGSNGKTTTTSLLYHLLEQAGLSIGVGGNIGNSF--ARMVAQEPKE--YYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +I       RPHIA++  I P HL  ++   +    AK  I E   +   + 
Sbjct: 155 EISSFQLDDIS----SFRPHIALLLNITPDHLDRYNYQFQNYIDAKFRITEFQSQADFLI 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD   +   AK   +  + I  F   K+      +   C +     + +     E+ 
Sbjct: 211 YDADDPVLQEELAKRKDIKAQCI-PFSLEKSN----EQGAYCLDDKLFHITINQNKFEMS 265

Query: 285 HHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              +   G H  +N++       +L    +   K+L  F        R       G    
Sbjct: 266 IRELTIKGKHNLKNVMGASVAAKLLNIRNENIRKSLMTFQGVP---HRLEFVKEVGEVRY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S+  A+  +       +G    V       G+   + +  L   +S   +
Sbjct: 323 INDSKATNVNSVYYALDSM------PDGLIWIV------GGQDKGNDYNPLIPYVSQ-KV 369

Query: 402 SHVWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G      +   +  +P  I  H   +M+      +    +GD V++
Sbjct: 370 KAIVCLGLDNQKIIQTFQSIVPTIIETH---SMEDAVQVSRGLSEEGDTVLL 418


>gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
 gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
          Length = 466

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 121/386 (31%), Gaps = 36/386 (9%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V   ++A+     +PV     +       A      ++  +IA+TGS GK+TT  ++   
Sbjct: 82  VPNPVIAAAWDAEVPVDNDIGLFFRSFATASWDDFDTQPRVIAVTGSNGKSTTAALIHHI 141

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L    +     G+    +           D +  + EL          L   + P +AV 
Sbjct: 142 LVENGRPAQLAGNIGRGVLDI----EPAHDGEVVVLELSSYQTD----LARSMTPDVAVF 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIY 248
           T ++P HL   +G+    +AK  +F          +  D++    +  +     G   + 
Sbjct: 194 TNLSPDHLDRHAGVGGYFAAKRRLFAEGGPD-RAVIGVDEAEGRYIANQLIEGPGDDRVI 252

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIV 303
                +      + W   + + ++    +G+      + V+    G H  QN        
Sbjct: 253 RVSSGQK--LAGQGWTVFARKGFLSEHRKGRQVGSIDLRVITGLPGAHNHQNACAAYAAC 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L           +      G   R +    +   T +++S   N  S   A+    ++
Sbjct: 311 RTLGLGPKGI---EAAMQSYPGLPHRSQVVAERDGVTFVNDSKATNVDSAAKALQAFPKV 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G          E G      H+D        +++  ++ G         L     
Sbjct: 368 RWICGGL-------QKEGGLDGLLPHLD--------HVAKAYVIGREAEDFARQLM-GAE 411

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
                TMD       +    G+VV++
Sbjct: 412 AEVCGTMDVAVSQAAADAQAGEVVLL 437


>gi|301794533|emb|CBW36975.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           INV104]
 gi|332200961|gb|EGJ15032.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA47901]
          Length = 444

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|218282273|ref|ZP_03488572.1| hypothetical protein EUBIFOR_01154 [Eubacterium biforme DSM 3989]
 gi|218216741|gb|EEC90279.1| hypothetical protein EUBIFOR_01154 [Eubacterium biforme DSM 3989]
          Length = 435

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 100/266 (37%), Gaps = 31/266 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GK+TT  +L   LS   +    IG  + +         MP   +  + E    
Sbjct: 104 ICVAGTHGKSTTTGILGQVLSLQDECAYLIGDGHGY---------MPEHANHFVLESCEF 154

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               + +      P  A+IT I   H+  +  I++  SA     + ++K   I +  D+ 
Sbjct: 155 QRHFLAY-----HPDYAIITNIELDHIDYYKDIDDYVSAFQSFADQVKKH--IVVFGDNE 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIG 289
             + L           + ++G     D+Q    +Q       + +  G+ +  V  + +G
Sbjct: 208 HLKNLHYNV------PVTTYGMKDGNDYQAVNIEQGPFGMHFDCKHNGEILAHVELNEVG 261

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               Q+ L    +  +L    D  ++        +G  +R+     +   +++ + Y  +
Sbjct: 262 DPFMQDALGCFALAHVLGMPADLIVQG---LKEYKGIARRFVIDEVKD--SVLVDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL 375
           P +++  I  + +  P    ++I  L
Sbjct: 317 PTAIRLMIDAVRKKYPE---KKIVAL 339


>gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 455

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 38/344 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I +TGS GKTT   ++ + L   KK     G+         T+A+     D  + EL  
Sbjct: 115 LIGVTGSNGKTTVTTLIQLMLDDNKKHAYVAGNIGVP---ATTVAQKATAEDKIVMELSS 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I  L     PHIAV+  I  +HL      E   + K  I +   K   + +N+D+
Sbjct: 172 FMLAGIDRL----HPHIAVLNNIFASHLDWHKTRENYVNDKMNITKNQTKDDFLVINWDN 227

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           + ++ L  ++ A  +      G +K+  +++       ++  ME               G
Sbjct: 228 TEWQELAKRTQA-KVVPFSRQGLTKSGAYEIEGKLYFKDELIMEAD--------EIGIPG 278

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N L  + +  I         + L+ F   +    R +   N       ++S   +
Sbjct: 279 EQNVENALAAIAVAKIEKVSTAHIKQVLTTFGGVK---HRIQYVENLNGRQFYNDSKATD 335

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLS 407
             + + A+    +         I + G +          H DL  ++     N+  V ++
Sbjct: 336 IEATQVALRSFKK-------PVILIAGGLDR--------HDDLDRLIPDLEPNVKEVIVN 380

Query: 408 GFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           G      K    ++      ++  +            +GD++++
Sbjct: 381 GETAEKFKKIAQKAGISVIKDSSRVSESVEIAYQDSKEGDIILL 424


>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 448

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 130/354 (36%), Gaps = 41/354 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A    +  +IA+TGS GKTTT  ++   L S  +     G+    I V   +  +  D
Sbjct: 102 AVALSSFEGRLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIG--IPVCEVIKDLTAD 159

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L      T  +RP IA+IT I   HL      E   +AK ++ +    
Sbjct: 160 -DTLLLELSSFQLMG----TPDIRPDIALITNIFANHLDYHGTRENYVAAKFQLTKNQTS 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN D    +    K+HA     + +F + KN D+ +R          +++ +   
Sbjct: 215 NQLLVLNADGQDTDEFIKKTHA----KVVAFSRIKN-DYTVRTDN-------VDLIISDN 262

Query: 280 SMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  +     +G H  +N++  + +  +           L  F   E    R +  L   
Sbjct: 263 HLMPLSGIKLVGPHNLENIVAAVTVAKLAGVHDTAIRHVLETFGGVE---HRLQHVLTDN 319

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL- 396
                ++S   +  + + A++   Q +          L    + G+       DL  +L 
Sbjct: 320 GVVFYNDSKATDIEATQTALNSFHQPT--------IWLAGGLDRGD-------DLMRLLP 364

Query: 397 SLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L ++  V   G     +   A   +  V   + ++          V GDVV++
Sbjct: 365 NLSHVKAVIAFGETQQKIVAVARAANKPVITVDDVEQAVPVAVKLAVTGDVVLL 418


>gi|108758004|ref|YP_630156.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
 gi|108461884|gb|ABF87069.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
          Length = 474

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 125/374 (33%), Gaps = 27/374 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++  + + G+ GKTTT  ++   L +  K  +  +G    +      + + P  V  G  
Sbjct: 104 RSHSVVVAGTHGKTTTSSLMAHVLVAAGKDPSFLVGGVTQNYAGNYRVGKGPHFVVEGDE 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                     +FL +  RP  A++T++   H   F  +    +   +    + + G + +
Sbjct: 164 YDTAYWDKGSKFLHY--RPRTAILTSVEFDHADIFRDLPHYEATFEKFVRLIPQDGQLVV 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
                    L A+    G    Y   +  +AD+  R      E +  +V  +G+    V 
Sbjct: 222 CAAYPNAVKL-AREGCPGRVVTYVAKEGADADYTPRNLSFGPEGARFDVVARGEVQGTVQ 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L  +     L    D   + L+ F   +    R +    +    L+ +
Sbjct: 281 LPMGGAHNVENALAVIAAAQGLGLTFDEIAQGLATFSGVK----RRQEIRGEPDGVLVID 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL----SQSFHIDLAEVLSLYN 400
            +  +P +++  I+ +    P    R  A+                  H       +   
Sbjct: 337 DFAHHPTAVRETIAAIHHRYPE--RRLWAIFEPRSNTSRRNIHQEDYAHAFPGAARASLK 394

Query: 401 I----SHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +      V   G  +     + D   + I    S  +  L          GDV++V  SN
Sbjct: 395 VPERHDKVP-VGEELDVRKLITDLQAQGIPAEGSTDVQALVDLAAREARPGDVLLVM-SN 452

Query: 454 SC--GF-YRLINLL 464
               GF  +++  L
Sbjct: 453 GAFGGFIDKVLAAL 466


>gi|313895810|ref|ZP_07829364.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975235|gb|EFR40696.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 141

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            + G +T I+++YNA+PASM+AA+   +++ P   GRRIAVLGDM E+G  S   H  + 
Sbjct: 6   HHIGAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGAASAEGHRSVG 62

Query: 394 EVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              +    + V   G     + + A        ++ T +     ++  L DGD V+ K S
Sbjct: 63  RTAAAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLADGDTVLFKGS 122

Query: 453 NSCGFYRLINL 463
                  ++ L
Sbjct: 123 RGMRMEHIMEL 133


>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
 gi|118595667|sp|Q1D0S8|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
          Length = 455

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 126/387 (32%), Gaps = 40/387 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +    ++ +A R+ S   +  ITG+ GK+TT  +     +S  K     G+         
Sbjct: 95  VAVWGEVELAGRMLSGVPLFGITGTNGKSTTTALTGTLFASGDKRTFVGGNLGRPFSEA- 153

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             A  P D D  + EL    L  IR L    RP  A I  + P H+  +        AKA
Sbjct: 154 --AMSPGDWDALVVELSSYQLEGIRTL----RPRGAAILNLTPDHIDRYPSHAAYGEAKA 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQ 269
            IF+  +    + +N DD+    L   + A     +Y F  +    AD          E 
Sbjct: 208 RIFQNQQAGDFVVVNADDADVLGLARAAKA----PVYGFSLTGKPVADAPALAGLAVVEP 263

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +   G+   + +  +         M   +++ L      A++A        G   R
Sbjct: 264 GGFRLAFLGEHYTLTNRALRGAHNAQNAMAAALLARLGGVASGAVQAG--LDGYPGLPHR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       +++S   N  S+  A+   SQ           + G     G+   + +
Sbjct: 322 LESVRVLDGVEWVNDSKATNVDSVLVALRAFSQG-------VWLIAG-----GKGKGAPY 369

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + E      +  V   G     L  A   +  VH   T+       +     GD V++
Sbjct: 370 APMVE-AGQGKVKGVLTIGDDADTLARAYAGAAQVHACGTLAHAVARARELAERGDTVLL 428

Query: 450 ---KSS---------NSCGFYRLINLL 464
               +S             F RL+  L
Sbjct: 429 SPACASFDQFKNFEDRGDSFKRLVEAL 455


>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
 gi|226711907|sp|A8ZXW5|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
          Length = 459

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 142/412 (34%), Gaps = 51/412 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGAL-----------NKLAVAA 102
           D ++ A   GA L +        + +  I V  GV + L  L            ++ +AA
Sbjct: 47  DLVVSARDLGATLELGGHQDSTFLSADYIVVSPGVPETLAPLKKAAEKGIPVMGEMELAA 106

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      + A+TG+ GKTT   +L   L +  +     G+    +           + D 
Sbjct: 107 RF-VTKPVAAVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPLIGFADKGE---NADM 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L      +   RPH+AV+  IA  HL+ +        +K  IFE  E    
Sbjct: 163 AVVEVSSFQLD----TSETFRPHVAVLLNIAEDHLARYVDFNAYVRSKGRIFENQEADDV 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQ 277
             +N  D  F +L+A       K  ++ GK+        D  +      ++ + + V   
Sbjct: 219 AVINGAD--FHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIVTAGTKTATISVTSP 276

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                        H  +N+         + A V+    A+  F    G   R     +  
Sbjct: 277 --------LMRARHNMENIAAATLAALAMGATVEGIQAAVDGFQ---GLRHRLEYVASID 325

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                D+S   NP +++ A+   +        R + +LG     GE     +  L  V+ 
Sbjct: 326 DVHYFDDSKATNPDAVRRALEFFTS-------RVVLLLG-----GEDKGCDYGVLKNVIR 373

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 V L G     ++ A+  S+ +  + +M             GD V++
Sbjct: 374 ER-ARAVVLFGAAKEKIRMAINGSVSLWDAGSMAEAVRRAHELAAPGDAVLL 424


>gi|229117409|ref|ZP_04246785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
 gi|228666019|gb|EEL21485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
          Length = 450

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGRKHPIIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IAV   +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----SFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K I+S  K       ++            +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSK--GQKIIFSTAKENEDGACIKDNA---------LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  +     +   +T+D   +   +   +GDV+++
Sbjct: 371 NVKALVTFGQTAPKLVRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|218780054|ref|YP_002431372.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
 gi|218761438|gb|ACL03904.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
          Length = 473

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 147/384 (38%), Gaps = 38/384 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+ T I +TG+ GKTTT  ++   ++++             IG  LT  +    V  
Sbjct: 110 FFASQKTPIMVTGTHGKTTTSALIAWLIAAVGLDP------TFMIGGILTNFKSNHQVGT 163

Query: 163 GIFELGMSHLGEIRFLTHLVR-----PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           G + +      +  F     +     P   V+T++   H   F  ++ + SA   + + L
Sbjct: 164 GAYMVIEGDEYDTAFFDKGPKFLHYTPSRTVLTSVEFDHADIFKDLDHVKSAFTSLVKNL 223

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +   +     D   + +  ++       +  +G  + A +++ + +     +++EV  +
Sbjct: 224 PRESLLVFQEADDNIKDILQQADCW----LTPYGFGEKAPWRIGEMRTEPPYTFIEVFRR 279

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+   E     +G H A N L  + +V  L   V+     L  F   +G  +R +    +
Sbjct: 280 GEFFAEFKVPLMGKHNALNCLAAIAVVDDLRIPVEGIQAGLETF---KGVARRQQVRGVK 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL---- 392
              T++D+ +  +P +++  I  +     + +GR  AV           +    D+    
Sbjct: 337 NNITVMDD-FAHHPTAVRETIKAVKPF--YDKGRVAAVFE--PRTNSSRRKVFQDVYPTV 391

Query: 393 ---AEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDG 444
              A+++ +   + +           + L      R    H+   + G+  F+  +L  G
Sbjct: 392 FDDADIICIPQPTLLEKIPPEERFSSEKLVEDLKARGKDAHFFADVQGIIDFLAKTLEPG 451

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
           D+ ++  SN  GF  +   LL+  
Sbjct: 452 DLALIM-SNG-GFENIHERLLDAL 473


>gi|326790202|ref|YP_004308023.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
 gi|326540966|gb|ADZ82825.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
          Length = 460

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 126/374 (33%), Gaps = 45/374 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I ++G+ GKTTT  ML   L +        +G     I   + + + P    + + E   
Sbjct: 115 ICVSGTHGKTTTTSMLAHGLMAADLDPTITVGGILKAIHGNIRIGQSP----YFLTEACE 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                + F      P I +I  I   H+  F  I +I  +  +    +   G + +N   
Sbjct: 171 YCDSFLDFF-----PQIGIILNIEEDHMDYFKDINQIRHSFQKFSSKIPSNGFLAINGKV 225

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV-HHG 287
              +   A           +FG   + ++         +  +  +V      M  +  H 
Sbjct: 226 PNLDEFTAPLSC----KTETFGIGSHYNWTAENITFNDKACASFDVYYNETFMTHLDLHV 281

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L    +   L  ++    K L  F    G  +R+         T++D+ Y 
Sbjct: 282 PGQHNILNALAVCSVYHFLGLELHLLGKGLEAFT---GADQRFEIKGKINDITIVDD-YA 337

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  + A + V      +       V          +++F  D A VLS  +  +V + 
Sbjct: 338 HHPTEIAATLEVAKAYPHNH---LYVVF--QPHTYTRTKAFLDDFAAVLS--SAENVII- 389

Query: 408 GFHVLALKDALPRSIHVH--------------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              + A ++  P  I                 Y +  + +  ++    V  D+V+   + 
Sbjct: 390 -TDIYAAREKNPGDISAEDIIKKINKKGKNALYMKDFEQIANYLNEHTVPNDLVITMGAG 448

Query: 454 SCGFYRLINLLLEE 467
           +    ++  LLL +
Sbjct: 449 NVN--QIAGLLLNK 460


>gi|260767159|ref|ZP_05876102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
 gi|260617833|gb|EEX43009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
          Length = 439

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 153/427 (35%), Gaps = 60/427 (14%)

Query: 31  SIDSRSIAPQE----AFFAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ID+R   P +    A  A+    ++         +    G+ +   ++  ++ + +IPV
Sbjct: 37  VIDTREAPPGQEQLPAGVALHSGSWNVAWLLAADLIVANPGIALATPEIQQALAA-NIPV 95

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            G  ++                  +IAITGS GK+T  ++  +  ++     A  G+   
Sbjct: 96  VGDIELFAW----------HVDKPVIAITGSNGKSTVTDLTGVMANAAGIATAVGGNIGV 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                L L   P +    + EL    L      T  +    A    ++  H+  + G+  
Sbjct: 146 P---ALDLLAQPAE--LYVLELSSFQL----ETTSSLALKAAAFLNLSEDHMDRYDGMAG 196

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AK  IFE  +   T  +N DD+     +    A   +T+  FG  + A+F       
Sbjct: 197 YRQAKLRIFEHAQ---TAVVNADDT-----QTYPDAYSGRTV-RFGLEQPAEFT------ 241

Query: 266 CSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            ++    EV L    +         +G H   N+L  L ++     +   A+ A      
Sbjct: 242 TAQHDGKEVLLANGEVVLPTSDLSLVGRHNVANVLTVLALLDAAGVNYTNALPA---LKS 298

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G   R +   +      +++S   N AS  AA+S L+       G    ++G + +  
Sbjct: 299 YTGLTHRCQVVADNQGIKWVNDSKATNVASTLAALSGLT-----LNGTLYLLVGGVGKGA 353

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + +      L  VL    +  +   G         +P        +TM+ +   I+  L 
Sbjct: 354 DFTP-----LKPVLETLPL-MLCCFGRDGD---QFMPLHASAQRFDTMEAIIASIRPQLK 404

Query: 443 DGDVVVV 449
            GD+V++
Sbjct: 405 AGDMVLL 411


>gi|306829827|ref|ZP_07463014.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mitis ATCC
           6249]
 gi|304427838|gb|EFM30931.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mitis ATCC
           6249]
          Length = 444

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSENAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G +++  DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G+H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GHHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D  +    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L   + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLASKITKKNQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|241889121|ref|ZP_04776425.1| UDP-N-acetylmuramate--alanine ligase [Gemella haemolysans ATCC
           10379]
 gi|241864370|gb|EER68748.1| UDP-N-acetylmuramate--alanine ligase [Gemella haemolysans ATCC
           10379]
          Length = 434

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 127/375 (33%), Gaps = 47/375 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L          +L S+   IA+TG+ GKTTT  M++        T   IG    H     
Sbjct: 85  LKTYTYSQFLGKLLSEIPSIAVTGAHGKTTTTTMVSNIFKHNHITSYLIGDGTGHG---- 140

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    +F I E    +   + +      P+ A++T I   H   F+   ++  A  
Sbjct: 141 -----EKHSEFMIAEACEYYRHFLAY-----HPNYAIVTNIDFDHPDYFNDEHDMFDAFQ 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                ++   T+ +  DD     LK  +          +G ++  D+Q++  +  SE S 
Sbjct: 191 SFVNQVK--DTVVICGDDRLASQLKPTTA-----KTIKYGFNEGNDYQIKNVQTTSEHSK 243

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V    + +        G H   N    + +  I    V+   ++L  + P E R   +
Sbjct: 244 FDVYKNSELLGTFTMAVFGLHDISNATSAIALADINGISVEKIKESLDQYKPAERRFSEH 303

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +   N     +I + Y  +P+ +KA I   S    +     IA+          +  F  
Sbjct: 304 KIGNN-----VIVDDYAHHPSEIKATID--SACRKYEGKEVIAIF--QPHTYTRTAKFLN 354

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----- 445
           + AE L       V+L       +  ++     +   E +  +    Q    + D     
Sbjct: 355 EFAESLET--ADKVFLC-----PIFASVREKEKIVGIEDLQKVTKDAQIINSENDFDKLN 407

Query: 446 ----VVVVKSSNSCG 456
               V +   + +  
Sbjct: 408 FDNSVFLFMGAGNIN 422


>gi|237739354|ref|ZP_04569835.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
 gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
          Length = 432

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 131/352 (37%), Gaps = 41/352 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  IIAITG+ GK+TT   ++  L+         G+    +           D+DF 
Sbjct: 87  KNLKTKIIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIGRSLSEA---LLHEKDLDFV 143

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  +       RP+I++I  + P H+  +   +E    K  I +   +    
Sbjct: 144 SLELSSFQLENVENF----RPYISMIINMGPDHIERYKSFDEYYDTKFNIAKNQNENQYF 199

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD     ++ ++  +  K I S  KSK A+  +   K    + ++           
Sbjct: 200 IENIDD---VEIEKRAKQIKAKRI-SVSKSKEANVYVEDNKIYVGKDFI-------IEAD 248

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L  +    IL  D +   + L V  P E    R     N G    I+
Sbjct: 249 KLSLKGIHNLENTLFMVATAEILNIDREKLKEFLMVATPLE---HRTELFFNYGKVKFIN 305

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S K AI              I + G   +  +L+      LAE++   NI  
Sbjct: 306 DSKATNVDSTKFAIQA--------NKDSILICGGYDKGVDLAP-----LAEMIKE-NIKE 351

Query: 404 VWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD--GDVVVV 449
           V+L G     ++  L +    +  +H  ET++   L ++        +V+++
Sbjct: 352 VYLIGVIADKIETELKKVGYEASKIHKLETIENSLLDMKKRFTKDSDEVILL 403


>gi|270292308|ref|ZP_06198519.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M143]
 gi|270278287|gb|EFA24133.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M143]
          Length = 444

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 139/376 (36%), Gaps = 56/376 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G ++++ DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAESNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKISKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLLLEEF 468
               F RL++ L   F
Sbjct: 428 YEYSFERLLSNLTSNF 443


>gi|297569886|ref|YP_003691230.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
 gi|296925801|gb|ADH86611.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
          Length = 502

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 125/411 (30%), Gaps = 46/411 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +G   +P         AL    +A R       + + G+ GKTTT  +L   L      
Sbjct: 110 ELGRRRLPYLSFP---QALRHYFLAGRRS-----LVVAGTHGKTTTSSLLATMLDHAGLD 161

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR-----PHIAVITT 191
                     IG  +           G F +      +  F     +     P + ++T 
Sbjct: 162 PG------FMIGGIVQAFGRSSRTGGGPFFVSEGDEYDTAFFDKGPKFLHYAPEVCILTG 215

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H   ++ +  + +A A +   +   G +    DD     L A +    +       
Sbjct: 216 VEFDHADIYADLAAVKTAFARLVALMPPQGRLVAFVDDPVVRELVAVAPCPVLGYGEG-- 273

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             + AD++L K       +   V  QG+   E      G H A N L  + ++  L    
Sbjct: 274 AGEGADWRLDKLTVSPGGTGFTVLRQGELFGEFFSPMPGRHNALNALAVIAVLDHLGVPP 333

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                 L+ F    G  +R       G  T+ID+ +  +P +++  ++ L    P    R
Sbjct: 334 AEIAAGLAAFT---GVRRRQEVRGEVGGVTVIDD-FAHHPTAVRETLAALKAAYP--GRR 387

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---SGFHV----------LALKDA 417
            +AV                 ++   +      V +    G                 D 
Sbjct: 388 LVAVFEPRTNSSRRRVFQEAYVSVFAA---ADRVLIREPEGLEAIPVDERFSVQRLAADL 444

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               +       +  +   +      GDVV +  SN  GF  +   LL   
Sbjct: 445 TAAGLPARAFAEVQEIIDQLAVDSRPGDVVAIL-SNG-GFDNIHQRLLARL 493


>gi|254775010|ref|ZP_05216526.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 496

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 147/430 (34%), Gaps = 57/430 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       IPV     VL  L             T + +TG+ GKTTT  M
Sbjct: 82  AAIPKTNPELVEARRRGIPVILRPAVLAKLMD---------GRTTLMVTGTHGKTTTTSM 132

Query: 126 LTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L +AL       ++A  G                   D  + E   S    + +      
Sbjct: 133 LIVALQHCGRDPSFAVGGEMGE-----AGTNAHHGSGDCFVAEADESDGSLLEYT----- 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AV+T I   HL  +   +   +      E L   G + +  DD     L  ++  LG
Sbjct: 183 PDVAVVTNIETDHLDFYGSADAYIAVFDAFVERLAPGGALVVCVDDPGAAALARRTAELG 242

Query: 244 IKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHM 292
           I+ +  +G   +            L  W+Q   ++  +++L G+      +     G HM
Sbjct: 243 IR-VLRYGSGSHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHM 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347
           A N L  L     + A  +  +  L+ F   EG  +R+      G         + + Y 
Sbjct: 302 ALNALGALLAAIEIGAPTEAVLDGLAGF---EGVRRRFELVGTAGGSAPSSTVRVFDDYA 358

Query: 348 ANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLS 397
            +P  + A ++ +   +   G GR IAV      +   +++F  +            VL 
Sbjct: 359 HHPTEIAATLAAVRTLLEQSGGGRSIAVF--QPHLYSRTKAFAEEFGHALDAADEVFVLD 416

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +Y      L+G    ++ + +  S+ V Y          + ++   GDV+V   +     
Sbjct: 417 VYGAREQPLAGVSGASVAEHV--SVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAGDVTL 474

Query: 458 --YRLINLLL 465
               ++  L 
Sbjct: 475 LGPEIVTALR 484


>gi|328946830|gb|EGG40967.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1087]
          Length = 444

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 160/490 (32%), Gaps = 91/490 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  ++ +  D ++I P     A      D
Sbjct: 15  MSALALMLHQMGHKVQGSDVDKYYFTQRGLEQAGISILPFDEKNIQPDFEIIAGNAFRPD 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  I +A   G                           +G                 + 
Sbjct: 75  NNVEIAYADANG---------------------------IGYKRYHEFLGSFMRDFVSLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  LS+I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSANAKYFVFE-----S 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D   
Sbjct: 154 DEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDEQL 211

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
             + + +       IY +G K +  DF      + +  S  +V  +G+ + E      G 
Sbjct: 212 RRITSNA------PIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +G++     D++   + L  F   +      R        T+I + +  +P
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVK-----RRFTEKIVNETVIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A +    Q            PH   R IA+L +  E    + S +     +  +Y 
Sbjct: 321 TEIIATLDAAHQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVY-----LAQIYG 375

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--- 456
               V      V  L + + +   V   + +  L         D  V V   +       
Sbjct: 376 SAREVDKGDVKVEDLAEKIVKRAKVIDVDNVSPLLDH------DNAVYVFMGAGDIQTYE 429

Query: 457 --FYRLINLL 464
             F RL++ L
Sbjct: 430 YSFERLLSNL 439


>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
 gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
          Length = 454

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 135/401 (33%), Gaps = 50/401 (12%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATII 111
              + +G  LVV N  +      +       IPV    ++   +           KA II
Sbjct: 63  DDLIHEGVSLVVKNPGIPYEAAPVKQAQALGIPVVTEVELASQIA----------KAPII 112

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTT  ++ +            G+    +     LA      ++ + EL    
Sbjct: 113 GITGSNGKTTTTTLVGLIFKEAGLDAKVGGNIGTVLCG---LAEEAGPDEWLVAELSSFQ 169

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L      T   RPHI V+  + PAHL     +EE  +AK ++F          L YD   
Sbjct: 170 LMG----TRKFRPHIGVLLNLYPAHLDYHHTMEEYLAAKLKMFANQTADDAAILPYDQP- 224

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGY 290
              +  K   L   +IY F KS+     + K     +   +     G +  +V    I  
Sbjct: 225 --EIVEKCKDLPA-SIYYFSKSQE----VPKGAFVKDGLILFADGNGNTEPIVAIADITV 277

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L  + +  +  AD  + I+ L+ F   E    R     +       ++S   NP
Sbjct: 278 PHLDNALAAILVAKLAGADKQSIIQVLTTFPGVE---HRMEFVDSIRGVKYFNDSKATNP 334

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +   A+    +      G             +    F  +L  V+    +  V   G  
Sbjct: 335 EAASRALQACKEPVVWICGGL-----------DRGVDF-RELLPVIQGR-VKAVIALGQT 381

Query: 411 VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L +    +      + +T++   L        GDVV++
Sbjct: 382 APILLERAQEAGINERIHVDTVEKAVLAASQLAESGDVVLL 422


>gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS315]
 gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes SSI-1]
 gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptococcus pyogenes
           MGAS315]
 gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,
           6-diaminopimelate ligase [Streptococcus pyogenes SSI-1]
          Length = 481

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 144/454 (31%), Gaps = 65/454 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV  V 
Sbjct: 38  LSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVT 90

Query: 90  DVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---------- 137
           D+  A++   +A     + K  ++A TG+ GKTT        L    K            
Sbjct: 91  DIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLD 150

Query: 138 -ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         L L  M  +         I E+        R   + +   + V   
Sbjct: 151 GKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGVFLN 208

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+    K  + E    +  + +N     F  L  +           
Sbjct: 209 ISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSVMDHFSFLADQVA--------- 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               ++  +      Q +       + +G+ +       IG+   +N +        L A
Sbjct: 257 --DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +    K ++      GR +      +   F      Y  N  S++  +SV+ +   H  
Sbjct: 315 SLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQT 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423
           G+ + +LG     GE  ++   D   V+  +    V L+           +   +   I 
Sbjct: 367 GKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIA 423

Query: 424 --VHYSETMDGLFLFIQSSLV-DGDVVVV--KSS 452
             V      +       S      D V++  K +
Sbjct: 424 RPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGA 457


>gi|270263957|ref|ZP_06192225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
 gi|270042150|gb|EFA15246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
          Length = 439

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L R   +    
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWAVGVGGNIGLP---ALSLLR--QECQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTFSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---AAL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG    AD       +   ++W+ V+ +     
Sbjct: 209 CVVNADDALTMPVRG-----ADQRCISFG----ADVGDYHLNRQQGETWLRVRGEKILNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     +++KAL+ F    G   R++ A        I
Sbjct: 260 REMKLTGRHNYTNALAALALADAVNIPRASSLKALTTFT---GLAHRFQLAWEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       +G    +LG   +  + S      L   L   N+ 
Sbjct: 317 NDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LGRYLQGDNV- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L +  P       ++TM+     I   +  GD+V++
Sbjct: 366 RLYCFGRDGEQLAELRPE--VATLTDTMEQAMQAIAGRVQPGDMVLL 410


>gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
 gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 464

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 140/434 (32%), Gaps = 72/434 (16%)

Query: 60  AVQKGAG---LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           A++ G      ++V +    +      P   + +    L K+ + +       I+ ITG+
Sbjct: 33  ALENGVVKEEALLVRSKQNMAFIPSDFPQENLIESCD-LGKVLLDSIPGENPRIVGITGT 91

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------TLARMPVD-------- 159
            GKTTT  ++   L  +    A +G+    I             ++  +  +        
Sbjct: 92  NGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFAKAKG 151

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ I E+    +  I+     +   + ++T I   HL     +EE    K   FE   +
Sbjct: 152 CDYFIMEVSSHAI--IQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFE---E 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N D+ +           G   ++ +G  K     +  +     +S ++  +  +
Sbjct: 207 RGLKLINADEKY----AQCQDQYGDIGVFYYGVEKKGHLSVGAYAL---ESGIDAHIAWR 259

Query: 280 SMEVVHH--------GIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRY 330
             +              G H   N L  +  V IL    +    +A+  F    GR +  
Sbjct: 260 DNKECSQESCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVV 319

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     L+   +      MK               ++IAV+      G+  +S   
Sbjct: 320 HHK------PLVIVDFAHTHDGMKQIFESFRH-------QKIAVV--FGAGGDRDKSKRP 364

Query: 391 DLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIH----VHYSETMDGLFLFI 437
            +      Y    ++++  +  +         +   LP+       V   +    +   +
Sbjct: 365 KMGACAFEY-ADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQAL 423

Query: 438 QSSLVDGDVVVVKS 451
            + L + +V+++  
Sbjct: 424 -NELQENEVLLILG 436


>gi|259503623|ref|ZP_05746525.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus antri DSM 16041]
 gi|259168397|gb|EEW52892.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus antri DSM 16041]
          Length = 435

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I I G+ GKT+T  +L   L++++ T   IG           + +   D  F +FE  
Sbjct: 104 TSIGIAGAHGKTSTTALLAHVLAAVEPTSYLIGDG---------VGKGNDDDRFFVFEAD 154

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 + +      P  A++T I   H   F  I+++  +       ++K   IF   D
Sbjct: 155 EYRDHFLDY-----HPDYAIMTNIDFDHPDYFKDIDDVRGSFETYGRQVKK--AIFAWGD 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D+    L           +Y +G     DF+    ++    S  +   + + +     H 
Sbjct: 208 DANLRKLDVDV------PVYYYGTGAGDDFRAENIRRTPAGSTYDAYFRDQKLGTFTIHL 261

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  L +  +   D+D   + L+ F   + R      A ++     + + Y 
Sbjct: 262 YGEHSILNSLAVLAVAYMEKVDMDKIRQELANFSGVKRRFSETDIADDK-----LIDDYA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL 375
            +P  +KA I    Q  P  E   +AV 
Sbjct: 317 HHPNEIKATIDAARQKFPDKE--IVAVF 342


>gi|269795573|ref|YP_003315028.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
 gi|269097758|gb|ACZ22194.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
          Length = 499

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 95/457 (20%), Positives = 158/457 (34%), Gaps = 46/457 (10%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            D+R  A  +A  A       GH    H    GA  +VV++ +      L   V      
Sbjct: 44  TDARRSAVTDALVASGIDVQVGHR-AEHV--AGAQTLVVSSAVREDNPEL---VAARSAG 97

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A L S +  +A+ G+ GKTTT  M  + L  +    +     +       
Sbjct: 98  LRVLHRSQALAILMSGSRAVAVAGAHGKTTTSAMTAVVLREVGLDPSFAIGGSVITETGA 157

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D  + E   S    + +     RP +AV+T + P HL ++        A  
Sbjct: 158 VPGGHSGTGDVLVAEADESDGSFLAY-----RPTVAVVTNVEPDHLDHYGTRAAFEEAFV 212

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E    +   GT+    DD+    L A+ HA     + ++G +  A   L  ++  ++ + 
Sbjct: 213 EFAGNIVPGGTLVACADDAGAAEL-ARRHAAAGGEVVTYGTAPGATALLSGYRVETDGTS 271

Query: 272 -MEVQLQGKS------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             E+ L G        + V     G H A N    L     L  D   A+ A+  F    
Sbjct: 272 AFELTLPGADAASADGLTVRLRAPGLHNALNASAALLAAVRLGVDPAAAVAAVWAF---R 328

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G G+RY      G   ++D+ Y  +P  + A +     +   G  R   VL     +   
Sbjct: 329 GTGRRYESRGTVGGVEVVDD-YAHHPTEVAALLRAARALVGTGSLR---VLFQ-PHLFSR 383

Query: 385 SQSFHIDLAEVLSLYNISHVWL------------SGFHVLALKDALPRSIHVHYSETMDG 432
           ++ F  + AE L L +   V               G H+  L D +     V        
Sbjct: 384 TRIFAQEFAEALDLAD-DVVVCDVYAAREDPDPEVGPHL--LVDRMTGRGRV--VADRVE 438

Query: 433 LFLFIQSSLVDGDVVVVKSSNSC-GFYRLI-NLLLEE 467
               +  S   GD+V+   +        ++ + L   
Sbjct: 439 AATSLAGSAEPGDLVLTVGAGDVTEMGAVVLDALRRR 475


>gi|322421364|ref|YP_004200587.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
 gi|320127751|gb|ADW15311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
          Length = 453

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 125/344 (36%), Gaps = 29/344 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            KA ++AITG+ GKTTT  +      +        G+  + +   + LA    +VD  + 
Sbjct: 106 IKAPMVAITGTNGKTTTTTLTGEIFKACGYQTFVGGNIGDPL---IDLAMSGEEVDRVVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPH+AV+  +   HL  +   +E   AK  IFE         L
Sbjct: 163 ELSSFQLEGIE----SFRPHVAVLLNLTEDHLDRYHSFQEYIDAKLRIFENQGPADFAVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD       +K  A            +   ++        +   +     G  ++   
Sbjct: 219 NIDDPLVAACASKLKAQLFPMSRFHELQEGISYRDGFITFARKGKVLRFGTDGFKLK--- 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N++ ++    ++  D D A +A+  F   +G   R          +  ++S
Sbjct: 276 ---GVHNLDNIMASMASTLLMGCDGDCAYQAVKSF---KGLPHRMEFVEEVNGVSYYEDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S+  ++           G            G+     +  LA+++S   +SH+ 
Sbjct: 330 KGTNVGSVVKSLESFDSGITLIAG------------GKDKGGSYEPLAKLVSER-VSHLV 376

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     +K+AL +     +++T++      +     G VV+ 
Sbjct: 377 LIGEARQRMKEALGQLTDTRFADTLEEAVDIARRLTEPGGVVLF 420


>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
 gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
          Length = 438

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L L   P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGDMAKAAGWQVGVGGNIGLP---ALMLLEQPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTASLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVYEN---AAV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    +      L  + + SFG +   D+ L      S +SW+ V+       
Sbjct: 209 CVVNADDA----MTFPVRGLDARCV-SFGINAG-DYHL---ATESGESWLNVKGDNLMKT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +   + +++KAL+ F    G   R++ AL++     I
Sbjct: 260 SDMTLVGQHNQTNALAALALAEAVGLPLASSLKALTTFS---GLAHRFQIALDRNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       +G    +LG   +  + S      L   L   N+ 
Sbjct: 317 NDSKATNVGSTEAALNGL-----QVQGTLWLLLGGDGKSADFSP-----LTRYLQGDNV- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G    AL +  P  I V  +ET+      I + +  GD+V++
Sbjct: 366 RTYCFGRDAQALAELRPE-IAVR-TETLADAMKQIATQVKPGDMVLL 410


>gi|312277651|gb|ADQ62308.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus thermophilus
           ND03]
          Length = 442

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 132/374 (35%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T   + G+ GKT+T  +L+ ++ +I  T   IG             R  
Sbjct: 93  HEFLGHFMNQFTSFGVAGAHGKTSTTGLLSHSMKNITDTSYLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ I+++ SA  +  + +
Sbjct: 144 ANAQYFVFEA-----DEYERHFMPYHPAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +DS    + + +       IY +G  +N DF      + +  S  +V+  
Sbjct: 199 QKG--LFVYGEDSNLRKITSNA------PIYYYGFEENDDFMATDIIRTTTGSNFKVKHD 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ + E      G H   N    +  + +   D+    + L  F   + R      +   
Sbjct: 251 GQIIGEFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKIISD-- 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D  E    + 
Sbjct: 309 ---TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  LA++  S   + H       V  L   + +   V   E +  L         D  
Sbjct: 366 AVY--LAQIYGSAREVDH---GDVKVEDLAAKINKPAKVVTVENVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
 gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
          Length = 454

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 124/365 (33%), Gaps = 45/365 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
             ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  FGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E+    L  I+      +P I+ I  I P HL      E     K  IF
Sbjct: 155 ---AEDDFIVAEISSFQLETIKEF----KPKISCIINITPDHLDRHKTFENYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WME 273
           E   +     LNYDD     LK K+       ++ F +       L       + S ++ 
Sbjct: 208 ENQREDEYTVLNYDDPVTWNLKNKAKC----RVFPFSRKS----LLENGAYVKDGSIYIS 259

Query: 274 VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           V    + +  +   +  G H  +N L    +  +     D     L  F   E    R  
Sbjct: 260 VYGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVE---HRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSF 388
                      ++S   NP +   AI  L           + + G      E  E  ++F
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKT-------PIVLIAGGYDKGSEFDEFVKAF 369

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDG 444
           +  +           + L G     +KD   +       + ++ T++        S  +G
Sbjct: 370 NGKV---------KKLILIGQTAKKIKDTARKYSYPEDDILFAGTLEEAVKKAYESAKEG 420

Query: 445 DVVVV 449
           D V++
Sbjct: 421 DSVLL 425


>gi|88704098|ref|ZP_01101813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
 gi|88701925|gb|EAQ99029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
          Length = 456

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 119/368 (32%), Gaps = 46/368 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +I ITGS  K+T  EML   + +   T    G+          L  +    +  + E
Sbjct: 116 QAPVIGITGSNAKSTVTEMLGAMVRAAGYTAGVGGNLGVP-----ALDLLDDRNELYVLE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  + P HL     +     AK  IF G +K   +  N
Sbjct: 171 LSSFQL----ERAGALNLQVATVLNLTPDHLDRHGSMPRYHQAKHRIFNGCKK---VVYN 223

Query: 227 YDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD      L A    L     +  G+    D Q    +    +  +    +        
Sbjct: 224 LDDPLTIPPLAAGRQQLS----WRLGE---PDLQGFGLRDIDGEPTLVHGFEPLLKASEL 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L + S +    +  +  L  F    G   R    L  G    I++S
Sbjct: 277 ALPGRHNLANALAALALGSAIDLPREAMMTVLREFS---GLAHRCELVLESGGVRWINDS 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +  AAI  L +       R I + G   +  +        + +     +   V 
Sbjct: 334 KATNVGAALAAIEGLGE-----SHRLILIAGGRDKGADF------RVLKPAVAAHCDKVL 382

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK------------SSN 453
           L G     + +AL  +  +   +T++      ++    GD+V++              + 
Sbjct: 383 LIGEAAPVIAEALGDAGDLLSVDTLEAAVASARAVAKPGDIVLLSPACASFDQFESYGAR 442

Query: 454 SCGFYRLI 461
              F  L+
Sbjct: 443 GERFKELV 450


>gi|54297666|ref|YP_124035.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
 gi|53751451|emb|CAH12869.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
          Length = 455

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IA+ G+ GKTTT  M+   L          IG  ++       L +      + +
Sbjct: 103 SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKG----RWFV 158

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP+IAV+  +   H   +  +  I      +   + K+G 
Sbjct: 159 IEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
                DD     + ++        I +   S  A++           S  ++   G  + 
Sbjct: 219 AIKPRDDKALNEVLSRGQ---FSRIETLALSGEAEWVAELIDDS--GSQFKILHNGGVVA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG    +N L  +        +   A KAL  F P +   +R     N+   T+
Sbjct: 274 EVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVK---RRLEVRSNRHGVTV 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   I  L +   H   R  AV+    E    +    +   E+  +L  
Sbjct: 331 YDD-FAHHPTAITKTIDALKRSGRHQ--RIFAVM----EFASYTMRTGVHAGEMAHALAP 383

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   ++       LKD +   +      +    +   I  ++ +GD V+V S+    
Sbjct: 384 VDGAYVLEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGDAVLVMSNRGFN 440


>gi|86147593|ref|ZP_01065903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
 gi|85834632|gb|EAQ52780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
          Length = 452

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 141/391 (36%), Gaps = 24/391 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     +++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDNNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YAPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G IF   +D+  + + ++        
Sbjct: 181 LVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFSPKEDTAIQDVLSRGCWSE--- 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             +    +  D+  +  K   + S   V  QG+ +  V  + +G H   N LM +     
Sbjct: 238 --TESSGEQGDWDAK--KLVKDGSQFGVYFQGECVGTVDWNLVGDHNVNNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A ++L+ F   +   +R          ++ D+ +  +P +++  +S L   + 
Sbjct: 294 VGVTPDLACESLAKFINTK---RRLEFKGEVAGVSVYDD-FAHHPTAIELTLSGLR--NK 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIH 423
               + IAVL        + +  H + LA+ L   + ++++       +++D A      
Sbjct: 348 VDTKKIIAVLE--PRSATMKRGVHKETLADSLKQADSTYLFQPDNIDWSVQDVADACHQP 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            H S+ MD     I S    GD ++V  SN 
Sbjct: 406 AHVSDNMDAFVAKIVSEAQAGDQILVM-SNG 435


>gi|153952381|ref|YP_001398918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939827|gb|ABS44568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 427

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/422 (15%), Positives = 124/422 (29%), Gaps = 80/422 (18%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A+++GA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFHAQALERGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  I+     ++    + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--IQNRIEGLKFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E        +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAVATNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            ++  +    +G     N+L+    V+ L    D      ++       G+  + A    
Sbjct: 232 NQTFHIDSPLLGLFNLYNLLVASACVNEL-VKPDLKDLEKAISEFGGVCGRVEQVAKG-- 288

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +   +   P  ++  +  L         + I V G   +  +  +     + E  +
Sbjct: 289 ----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 398 LYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              I     S           +  +     +   V   E              + D+VV+
Sbjct: 339 KIAI---ITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVI 395

Query: 450 KS 451
             
Sbjct: 396 LG 397


>gi|296129443|ref|YP_003636693.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas flavigena DSM
           20109]
 gi|296021258|gb|ADG74494.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas flavigena DSM
           20109]
          Length = 895

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 135/406 (33%), Gaps = 41/406 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      V       +PV    + L AL     A         +A+ G+ GKTTT  M
Sbjct: 476 SAVRSTNPEVVRARERGVPVLHRSEALAALMADRDA---------VAVAGAHGKTTTSGM 526

Query: 126 LTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L  AL  +    ++A  G          TL          + E   S    + +      
Sbjct: 527 LAAALVHAGADPSFAIGGVVRAT---AGTLGGARHGDGPFVAEADESDGSFLAY-----E 578

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AV+T + P HL ++   E   +A     + +   G +    DD     L A      
Sbjct: 579 PLVAVVTNVEPDHLDHYGTRERFEAAFERFADRVRDGGLLVACADDPGAARLVAAVRHRL 638

Query: 244 IKT---IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLM 298
            +    + ++G S +AD ++ + +   +  W  V        V  H    G H A +   
Sbjct: 639 TERGVALRTYGTSADADVRVGESRSTPDGRWRVVLSPRDEEPVTLHLQVAGAHNALDAAA 698

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +  L      A   L  F    G G+R+          ++D+ Y  +P  + A + 
Sbjct: 699 AWCALRRLGVGSAEAAAGLDDFV---GTGRRFEDRGTAAGVRVVDD-YAHHPTEVAALLR 754

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV---- 411
              Q++  G   R+ VL     +   +++F  +  E   L +   ++ V+ +        
Sbjct: 755 AARQVAGDG---RVLVLFQ-PHLFSRTRTFAREFGEAFDLADAVVVTDVYAAREDPDPSV 810

Query: 412 --LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               + D +P      +          + +     D+++   +   
Sbjct: 811 TGALVVDRVPTPGKAQFVPDRLDAARAVAALARPRDLLLTVGAGDV 856


>gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 113/348 (32%), Gaps = 32/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A II +TGS GKTTT  M+T  L+  +K      + N  +    T  +   D D  
Sbjct: 108 QMTDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKSTAD-DTI 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L  I+ L     PH+AV+T I   HL      +   +AK  I          
Sbjct: 167 VMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFF 222

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N+D   +  L  +S A  +    +    + A    +  K         +         
Sbjct: 223 VVNFDSDEWRQLSKRSKAQIVPFARTSEIDRGA--YEKNGKLYYND-EFIMNADD----- 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N L  +    IL           +V     G   R +  L        +
Sbjct: 275 -IKVPGQQNVENALAAIATAKILGKSNLAI---TNVLETFTGVRHRVQFVLEADGRKFYN 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   +  + + A+              + +L    + G           + +       
Sbjct: 331 DSKATDIEATQIALEGFDH--------PVVLLAGGLDRGYTFDKMVPQFKQHVKAA---- 378

Query: 404 VWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L G     L+++L ++   ++   + +D            GD++++
Sbjct: 379 -VLFGQTADLLEESLQKAGVKNITKVDNLDEAVPAAYHYSDSGDIILL 425


>gi|288939892|ref|YP_003442132.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
 gi|288895264|gb|ADC61100.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
          Length = 458

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 148/431 (34%), Gaps = 56/431 (12%)

Query: 31  SIDSRSIAPQ---------EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             DSR   P          E    + G       F          LVV     +A     
Sbjct: 43  VTDSRERPPGLDVLQSELPEVAVFVGG-------FDPDVFAAATELVVSPGVPLAEPLIR 95

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                GV     A+  + + AR    A + AITGS GK+T   ++ +      +  A  G
Sbjct: 96  QAIARGVP----AVGDIELFARE-IHAPLCAITGSNGKSTVTTLVGLMARLAGQRVAVGG 150

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +    +     L  +  DV+  + EL    L         +R   AV+  ++  HL  ++
Sbjct: 151 NLGEPV-----LDLLAPDVERYVVELSSFQL----ETVPSLRADAAVVLNVSADHLDRYA 201

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G+++ A  KA I++G        +N DD    ++ A       +  ++ G  + +DF   
Sbjct: 202 GLDDYARTKARIYQGAR---IAVVNRDDP---IVAAMPRDPEREIGFTLGVPEGSDF--- 252

Query: 262 KWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
             +    QSW+    QG+            G H   N L  L +       +  A +AL 
Sbjct: 253 GVRVLEGQSWI---CQGEEPILPTAAIRLPGRHNLANALAALALAQASAIPMAGACEALR 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           VF    G   R      +      D+S   NP +  AA+  L  I   G GR + + G  
Sbjct: 310 VF---PGLPHRSEFVAERAGARWYDDSKGTNPGATIAALEGL--IPEDGSGRVVLIAGGE 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  + +                  V L G     +  AL  ++ +  +  MD       
Sbjct: 365 GKGADFAP------LRAAVERAARAVVLIGRDAPLIASALDGTVPLIRATDMDAAVALAA 418

Query: 439 SSLVDGDVVVV 449
             +  GD V++
Sbjct: 419 EHIEPGDCVLL 429


>gi|148997418|ref|ZP_01825023.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575284|ref|ZP_02721247.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           MLV-016]
 gi|307068165|ref|YP_003877131.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae
           AP200]
 gi|147756473|gb|EDK63514.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578920|gb|EDT99448.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           MLV-016]
 gi|306409702|gb|ADM85129.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae
           AP200]
          Length = 444

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 139/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++ +DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGSDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
          Length = 438

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 142/376 (37%), Gaps = 50/376 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ + ++ RL  +A II+ITG+ GKT++  M+   ++        +G+    I     L 
Sbjct: 84  ISDIELSYRLYPQAKIISITGTNGKTSSTSMVNHIVNEACIKSIAVGNIGEGI-----LW 138

Query: 155 RMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           +M  + D F   EL    L +    T    PHIA IT I   H+      E+  ++K  I
Sbjct: 139 QMYNNKDAFFACELSSFQLHD----TKTYHPHIACITNITEDHIDWHGSFEDYINSKLNI 194

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +  ++   + +N++D   +  K    A     +Y F         + +     + +   
Sbjct: 195 TKNQDENDFLIINHEDKILQDHKKDYKA----QVYEFSSKNE----VERGAYLKDGA--- 243

Query: 274 VQLQGKSMEVV-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           + L+ K    V        IG H  +N+++ L    +    +   IK L  F   E    
Sbjct: 244 IYLKDKEEIKVIDVDELSVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIE---H 300

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R           + ++S   N  S   AI   ++         I + G            
Sbjct: 301 RLEYVDTIRKVKIYNDSKGTNVDSSIKAIESFTE-------PLIIIAGGY--------DK 345

Query: 389 HIDLAEVLS--LYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDG 444
           HID  + +     N   + + G     LK  L  +  V Y  +E M+        +  +G
Sbjct: 346 HIDYTDYVKSFKKNGKLMVIMGQTKDKLKK-LCENYQVAYKEAEDMEDAIRICFENAKEG 404

Query: 445 DVVVVK-SSNSCGFYR 459
           DV+++  +S S G Y+
Sbjct: 405 DVILLSPASASWGMYK 420


>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 476

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 119/351 (33%), Gaps = 43/351 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            I +TGS GK+TT  ++   L          G+    + +           D  + EL  
Sbjct: 131 TIGVTGSNGKSTTTTLIGDILQQTSNKIWVGGNIGKSLLLQ---LEEMKPADIVVLELSS 187

Query: 170 SHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L     L+ + + P I+++T I+P HL     I+    AK  I    +++ +  LNYD
Sbjct: 188 FQL---ESLSSIKKSPCISIVTNISPNHLDRHKDIDSYIHAKKNIILHQKQSDSAILNYD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----V 284
           D+       + +      +  +   +  +    +     E   + + + G ++ +     
Sbjct: 245 DTELRTWGKECYG----RVLWYSTQQPVENGAFR-----ENEHIVISIDGNTISIPCVSK 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L       +  A+  T  K ++ F    G   R             ++
Sbjct: 296 IKLPGDHNLHNVLAASCATYLHGANKQTIEKTVTSF---CGLEHRLEFVREAKGIRYYND 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S    P S  AAI              + + G   +  +       + A + S Y    V
Sbjct: 353 SKATTPESAIAAIMSFKN--------SVLIAGGYDKGSDF-----EEFAAICSNY-CKAV 398

Query: 405 WLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G        +++LK       HV  + T+   F    +    G V++ 
Sbjct: 399 VLIGKTANKIEELISLKKGEKEYPHVCVANTLKDAFQTANTLTTPGGVLLF 449


>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae OXC141]
          Length = 446

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 128/351 (36%), Gaps = 42/351 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A II ITGS GKTTT  M+   L++  +     G+          +A+   D D
Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP---ASQVAQTASDKD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++       P IAVIT + P H+       E  +AK  I   +    
Sbjct: 163 TLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN    F + L +K+ A    T+  F   +  D   L   +        EV +    
Sbjct: 219 FLVLN----FNQDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG---EVVMAANE 267

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N L T+ +  +   D  T  + LS F   +    R +   +     
Sbjct: 268 I----GVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVK---HRLQFVDDIKGVK 320

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N  + + A+S            ++ ++    + G        D+        
Sbjct: 321 FYNDSKSTNILATQKALSGFDN-------SKVVLIAGGLDRGNEFDELVPDI------TG 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     +K A  ++  V Y E   +             GDVV++
Sbjct: 368 LKKMVILGQSAERVKRAADKAG-VAYVEATDIADATRKAYELATQGDVVLL 417


>gi|57238652|ref|YP_179783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
 gi|57167456|gb|AAW36235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
          Length = 427

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  I+     +     + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--IQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAIVTNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 232 NQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 288

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 289 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 337

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 338 AKIAI---ITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVV 394

Query: 449 VKS 451
           +  
Sbjct: 395 ILG 397


>gi|313890708|ref|ZP_07824333.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120809|gb|EFR43923.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 461

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 123/350 (35%), Gaps = 36/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A IIAITGS GKTTT  M+   L+   ++    G+        + L   P D  
Sbjct: 115 AYLVSEAPIIAITGSNGKTTTTTMIADVLNHGGQSALLSGNIGYP-ASEVVLKAEPKD-- 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L           PHIA+IT + P H+     +E   +AK  I + +    
Sbjct: 172 RLVMELSSFQLMG----VDAFHPHIALITNLIPTHIDYHGSLENYVAAKWNIQQRMTNED 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKS 280
            + LN D     +L +K+ A     +  F   K  +   L+  K      ++        
Sbjct: 228 YVILNADQELTRVLASKTQA----KVLYFSTKKEVEGAYLQGDKLYYNGEFIM------- 276

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L T+ +  +        +  L  F   +    R + A      T
Sbjct: 277 EASSIGVPGLHNVENALATIVVAKLSNIANHVIVDTLKHFGGVK---HRLQYAGQLHDIT 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + N   + A    LS          I + G   + G        D+        
Sbjct: 334 FYNDSKSTN---ILACQKALSGFDKEN---LILIAGG-LDRGNSFDELVPDI------KG 380

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           I  + L G     ++ A   +   H  ++ +           + GD++++
Sbjct: 381 IKKMILIGETAGKMELAADTAGVSHSNAKDVAEATRIAFKEALAGDIILL 430


>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
 gi|150273021|gb|EDN00178.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
          Length = 461

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 122/379 (32%), Gaps = 59/379 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GKTTT  +++  L          G+    +   L         D  + EL  
Sbjct: 118 IIAVTGSDGKTTTTTIISELLKKAGYNVYVGGNIGKPL---LAETPNMEPDDMVVLELSS 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  +      + P IAV+T +AP HL     +EE   AK  IF           N+D+
Sbjct: 175 FQLMTMD-----MSPDIAVVTNVAPNHLDVHKSMEEYVEAKENIFAHQSTENLAVFNWDN 229

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRK---WKQCSEQSWMEVQLQGKSMEVV 284
                   K+       +  F + +  +    ++    W    +     + L        
Sbjct: 230 EITRDFSKKAPG----NVMCFSRREMLERGIYVKDDAIWCADRDGHRKVLLLSD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N +  +  V+ L    +T       F   E    R             ++
Sbjct: 280 ILLPGNHNVENYMAAIAAVNGL-VSDETIRLFARSFGGVE---HRIELVRTVDGVRYYND 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  ++P    A +    +       + I + G   +          ++ E     ++  +
Sbjct: 336 SIASSPTRTIAGLRSFEE-------KVILIAGGYDKHIPF-DVLGPEIIE-----HVKEL 382

Query: 405 WLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            L+G     ++ A+  +         +   +  +   L   S    GDVV++    +S  
Sbjct: 383 ILTGDTAEKIRAAVENAPGYNGSNPPIRMYQDFEQAVLAAHSMAQPGDVVILSPACASFD 442

Query: 453 -------NSCGFYRLINLL 464
                      F R++  L
Sbjct: 443 RFKNFMERGNAFKRIVREL 461


>gi|197334019|ref|YP_002155024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
 gi|197315509|gb|ACH64956.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
          Length = 447

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 137/403 (33%), Gaps = 41/403 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A+ G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDKNLKYTSGPQWLQEFLLQDRWVLAVAGTHGKTTTSSMLAW 111

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + G    L     +  F + E            +  V  RP 
Sbjct: 112 VLEECGYKPGFLVGGVLGNFGESARLG----ESMFFVVEADEYDSAFFDKRSKFVHYRPR 167

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +  TG IF    D   E +  +       
Sbjct: 168 TLVLNNLEFDHADIFDDLAAIQRQFHHLIRTVPSTGRIFAPKQDKPLEQVLEQG------ 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +    D Q +  K   + S  +V  +G+ + +V    +G H   N LM +    
Sbjct: 222 -CWSELEFTGEDGQWKAIKLQKDGSQFDVYFEGEKVGQVNWDLVGDHNVSNALMVVASAR 280

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R          T+ D+ +  +P ++   ++ L   +
Sbjct: 281 HVGVTPDLACEALGKFINTK---RRLELKGEVNGVTVYDD-FAHHPTAIDLTLNGLR--N 334

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LK 415
             G+ + IAVL      M  +G    +         SL+    V+L     +A     + 
Sbjct: 335 KVGDKKIIAVLEPRSSTMK-LGVHKDTL------AASLHAADSVYLYQPDNIAWSVDDVA 387

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
               +  H H    +D     I +    GD ++V  SN  GF 
Sbjct: 388 QQCTQPAHTH--NNIDAFVDMIVNEAQPGDQILVM-SNG-GFE 426


>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 454

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 126/365 (34%), Gaps = 45/365 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
             ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  FGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                  F + E+    L  I+      +P I+ I  I P HL+     E     K  IF
Sbjct: 155 SEDA---FIVAEISSFQLETIKEF----KPKISCIINITPDHLNRHKTFENYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WME 273
           E   +     LN+DD     LK K+       ++ F +  +    L         S ++ 
Sbjct: 208 ENQRENEYTVLNFDDPVTWSLKNKAKC----RVFPFSRKNS----LENGAYVKNGSIYIS 259

Query: 274 VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           V    K +  +   +  G H  +N L    +  +    VD     L  F   E    R  
Sbjct: 260 VDKNAKKIIDIEEIYIPGEHNLENALAASSVAYLSGISVDVIANTLKTFKGVE---HRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSF 388
                      ++S   NP +   AI  L       +   + + G      E  E  ++F
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL-------KPPIVLIAGGYDKGSEFDEFVKAF 369

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDG 444
           +  +           + L G     +KD   +       + +++T++        S  +G
Sbjct: 370 NGKV---------KKLILIGQTAKKIKDTAKKYYYPEDDILFADTLEEAVKKAYESAKEG 420

Query: 445 DVVVV 449
           D V++
Sbjct: 421 DSVLL 425


>gi|283957027|ref|ZP_06374499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791528|gb|EFC30325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 427

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  ++     +     + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--VQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAIVTNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 232 NQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 288

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 289 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 337

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 338 AKIAI---ITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKENDDLVV 394

Query: 449 VKS 451
           +  
Sbjct: 395 ILG 397


>gi|258404872|ref|YP_003197614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797099|gb|ACV68036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 135/393 (34%), Gaps = 58/393 (14%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGV----DDVLGALNKLAVAARLRSKATIIAITGS 116
           V+ G         +   + S  +PV  +       +  +++L +A+       I+A+TGS
Sbjct: 63  VRTGEHAAADFDGVQMVVPSPGVPVHRLVHLFPQTVQIISELELASWF-VNEPIVAVTGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L +  +     G+    +     LA+   DV   + E+    L    
Sbjct: 122 AGKTTTTTLIAHILETAGRRVFSGGNLGTPLS-EYVLAQDQADV--LVLEVSSFQLVH-- 176

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P +AV+  +AP HL     +E    AK ++F   +        Y  +  E L+
Sbjct: 177 --ASSFHPKVAVLLNVAPNHLDYHEEMEAYVLAKLKLFAKQQPGDLAIAPY--ALKEDLE 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++  +   +  +                           +            G H   N+
Sbjct: 233 SRHFSAADRVYF---------------------------VPNDRFSCP-QLPGEHNQANI 264

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                    L  D     +AL+ + P+     R +         ++D+S      S++AA
Sbjct: 265 EAAYLACRYLGVDEQAVAEALASYQPQA---HRLQIVGTWNGVKVVDDSKATTIESLQAA 321

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    +         + + G   + G+ S      +A+++    +  V L G +    + 
Sbjct: 322 LRSFEE-------PIVLLAGGQFKGGDPSL-----VADLIRTR-VKEVVLFGDNRDVFES 368

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A      + +  T++       ++   GDV+++
Sbjct: 369 AWQGLAPMRWFPTLEDAVDHGATTTQSGDVLLL 401


>gi|322513881|ref|ZP_08066960.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
 gi|322120280|gb|EFX92227.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
          Length = 436

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 131/347 (37%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   ++T             G+    +     L+ +  + +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV-----LSLLNEEYELF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++  +A I  I+  H+    + +EE   AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTSSLKAVVATILNISEDHMDRYNNSVEEYRLAKLRIYDNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     L        +K +  F +  NA++ +R     S     +  +  K M 
Sbjct: 210 VIVNGED----RLTYPLETQAVKKLIRFAEH-NAEYTMRNGILYSGD---DAIIPTKEM- 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L+ + +        +  +KA        G   R++          +
Sbjct: 261 ---LISGRHNEMNALVAMALAETAGIPREGIVKA---LQVYGGLEHRFQAVKTNDGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L  +     G    +LG     G+   +   +L  +++  NI 
Sbjct: 315 NDSKATNVGSTVAALNGLQVV-----GTLYLLLG-----GDGKAADFSELKPLINKPNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G     L     +S+ V   ETM      I+  L  GD+V++
Sbjct: 364 VCYCFGQDGAQLAALSNQSVLV---ETMQQAIEQIRPQLKKGDMVLL 407


>gi|148241126|ref|YP_001226283.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
 gi|189082508|sp|A5GPX1|MURC_SYNR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147849436|emb|CAK26930.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
          Length = 479

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 126/384 (32%), Gaps = 43/384 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVP 150
           L  +++  + A L +    IA+ GS GKTTT  ++   L S      A IG     +   
Sbjct: 101 LRVVHRSELLAWLINAQHSIAVAGSHGKTTTSSLIASLLHSAGLDPTAIIGGV---VPAF 157

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            + AR     ++ + E   S    +RF      P + +IT +   H  ++  ++ + +  
Sbjct: 158 GSNARNGAG-EWLVAEADESDGSLVRF-----HPQLGLITNLELDHTDHYPNLDALVATM 211

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                       +  N D          S  L     +S  ++ +A F+           
Sbjct: 212 RRFSGNCSS---VLANRDCPVL------SAELSADHWWSLQENSSAHFRAVPLSLDGAGC 262

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +    G+ + E+     G H   N L  +    +  A         +        G+R
Sbjct: 263 RADYLEDGRRLGELALPMAGIHNLSNALAAVAACRLAGASFADL---QAALTELVPPGRR 319

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVL-------SQISPHGEGRRIAVLGDMCEMG 382
           +          LI + Y  +P+ + A +++            P    R +AV        
Sbjct: 320 FDLRGEWQG-RLIVDDYAHHPSEVDATLTMAQLMVSSGKSTLPWVPKRVVAVF--QPHRY 376

Query: 383 ELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDG 432
             +  F    AE         V  LY+     + G     L + + ++ H       MD 
Sbjct: 377 SRTAQFMERFAEALGCADEVLVAPLYSAGESAIEGVSSATLAEKVQQAGHSARALADMDS 436

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCG 456
           L   +Q     GD+V+V  +    
Sbjct: 437 LVDAVQQCSSAGDLVLVMGAGDVN 460


>gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           cylindroides T2-87]
          Length = 436

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 138/430 (32%), Gaps = 62/430 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--VFG 87
           I  DS  +              D     +  V  G    ++  D    + +  IP  V  
Sbjct: 28  ILTDSNEVK----------EKMDLEALGIEVVDNGHPDWLLEKDYPFVVKNPGIPYRVPI 77

Query: 88  VDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           V     A      ++ +A R        A+TG+ GKTT   +L   L++ +K     G+ 
Sbjct: 78  VKHFQEAGVPIYTEIEIAYRFAPGFKYAAVTGTDGKTTVTTLLYEMLNAKEKAL-VAGNI 136

Query: 144 NNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +     LA +  +  F +  EL    L  I       +P I+V+T +AP HL     
Sbjct: 137 GTPLSE---LALIHQEETFNVALELSNFQLLGIDTF----QPKISVVTNLAPDHLDYMDS 189

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +EE   +K  I++          N DD                 + +F  ++ AD     
Sbjct: 190 LEEYYQSKMLIYKNCNSQDWFIRNIDDENIVKYAQNIPC----QVINFSLTQEADLYKDD 245

Query: 263 -WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +    ++   ++             +G     N +M   +   +  D++T    +  F 
Sbjct: 246 TFAYLKDEILFKLS--------DLKIVGDFNCGNAMMAACMAYKMGIDLETIQSVIRSFK 297

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             E    R             ++S   N  +  AA+S   +         I + G     
Sbjct: 298 GVE---HRIEYVNTINGVRFYNDSKATNTHAACAALSAFDK-------NVILLCG----- 342

Query: 382 GELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
               +  HI   + L  Y+  I H +  G      K            +TM         
Sbjct: 343 ---GKDKHISF-DDLKQYDHKIKHCFSFGQTKDHFKSIFTNQTS---CQTMKDALDHAIE 395

Query: 440 SLVDGDVVVV 449
            + +GDV+++
Sbjct: 396 IIEEGDVILL 405


>gi|260687887|ref|YP_003219021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
 gi|260213904|emb|CBE05944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
          Length = 451

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 127/359 (35%), Gaps = 35/359 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A +L +    I ITG+ GKTTT  ++    S  K+    +G+  N +   +   
Sbjct: 96  IGEVELAFKLSNNPIFIGITGTNGKTTTTSLVGEIFSRAKRDTYVVGNIGNPVIDTI--- 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +    + EL    L  I       RP ++ I  I   HL+    +E+   AKA IF
Sbjct: 153 ETSSEESVLVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKANIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWM 272
                     LNYDD   + L  K +A     +  F ++K  N    L       +    
Sbjct: 209 MNQTVEDFCVLNYDDEVVKSLADKCNA----KVIYFSRTKKVNGGVYLENNDIIIDIDDK 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L    +       G H  +N +  + I  +   D++     L  F   E    R   
Sbjct: 265 IKFLNKDDV----SLPGGHNLENCMAAIAIAYVCKIDLEVTKDVLMTFKGVE---HRQEF 317

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N      +++S   NP S   AI          +   I + G M    +   +F  +L
Sbjct: 318 VRNLDNVIYVNDSKGTNPDSTIKAIQS-------YDRPIILIAGGM----DKGSNF-DEL 365

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E    Y +  + L G     +++         +H  + M+            GD+V++
Sbjct: 366 LETAKSY-VKSLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|15903416|ref|NP_358966.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           R6]
 gi|116515384|ref|YP_816811.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           D39]
 gi|148984866|ref|ZP_01818119.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP3-BS71]
 gi|149003263|ref|ZP_01828159.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007572|ref|ZP_01831207.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011756|ref|ZP_01832952.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP19-BS75]
 gi|168487491|ref|ZP_02711999.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168491587|ref|ZP_02715730.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC0288-04]
 gi|182684476|ref|YP_001836223.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CGSP14]
 gi|194398270|ref|YP_002038152.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           G54]
 gi|225861354|ref|YP_002742863.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650203|ref|ZP_04524455.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CCRI 1974]
 gi|237820914|ref|ZP_04596759.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230253|ref|ZP_06963934.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254457|ref|ZP_06978043.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503257|ref|YP_003725197.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255306|ref|ZP_07341376.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS455]
 gi|303260146|ref|ZP_07346118.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP-BS293]
 gi|303262536|ref|ZP_07348477.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264938|ref|ZP_07350853.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS397]
 gi|303267248|ref|ZP_07353112.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS457]
 gi|303269558|ref|ZP_07355321.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS458]
 gi|32171458|sp|Q8DP40|MURC_STRR6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122277691|sp|Q04HS5|MURC_STRP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706331|sp|B5E685|MURC_STRP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620434|sp|B2IQY8|MURC_STRPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766028|sp|C1CSE1|MURC_STRZT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15459022|gb|AAL00177.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae R6]
 gi|116075960|gb|ABJ53680.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae D39]
 gi|147758723|gb|EDK65720.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760931|gb|EDK67901.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764187|gb|EDK71119.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922888|gb|EDK74004.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP3-BS71]
 gi|182629810|gb|ACB90758.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CGSP14]
 gi|183569685|gb|EDT90213.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574271|gb|EDT94799.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC0288-04]
 gi|194357937|gb|ACF56385.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae G54]
 gi|225726468|gb|ACO22319.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238852|gb|ADI69983.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800356|emb|CBW32986.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           OXC141]
 gi|301802241|emb|CBW34992.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           INV200]
 gi|302597674|gb|EFL64750.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS455]
 gi|302636253|gb|EFL66747.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638643|gb|EFL69106.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP-BS293]
 gi|302640902|gb|EFL71286.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS458]
 gi|302643213|gb|EFL73496.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS457]
 gi|302645457|gb|EFL75689.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS397]
 gi|327389706|gb|EGE88051.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA04375]
 gi|332073857|gb|EGI84335.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA41301]
 gi|332074274|gb|EGI84751.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA17545]
 gi|332199565|gb|EGJ13640.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA41317]
          Length = 444

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 443

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 116/346 (33%), Gaps = 30/346 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L          G+        ++        DF + 
Sbjct: 99  TNAKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIGKSFAWQVS----EDTHDFYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I+      +PHIA+IT I+P HL  +    E+   +K  I     +   + 
Sbjct: 155 ELSSFQLDGIQK----YKPHIAIITNISPDHLDRYDYQYEKYIESKFRITMNQTEEDYLI 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD         +       +  F  +K  +F    ++  +  +              
Sbjct: 211 YDADDQAINNWLKNNKTKA--QLVPFSLTKQFEFGA--YEANNNININTNNDPFVMQTSE 266

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L    +  +L     T  ++L+ F   E    R    L       I++
Sbjct: 267 LSLEGKHNVKNALAATSVAQLLKIRKATIRESLADFQGVE---HRLEKVLKIQNVQYIND 323

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A+  ++  +    G            G    + + +L E+++  N+  +
Sbjct: 324 SKATNVNATFYALDSMTSPTIWIVG------------GVDKGNDYSELMELVNK-NVKTI 370

Query: 405 WLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     + DA    +  +    TM             GD V++
Sbjct: 371 ICLGVDNKKIIDAFSNVVDELIEVSTMTDAVRQAYKMAEKGDTVLL 416


>gi|149021790|ref|ZP_01835797.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930026|gb|EDK81013.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 444

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 139/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGLANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++ +DF      + +  S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGSDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 438

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 135/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--IAQQTETMEEAMRLLAPHVQPGDMVLL 410


>gi|83815787|ref|YP_445056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salinibacter ruber DSM 13855]
 gi|83757181|gb|ABC45294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salinibacter ruber DSM 13855]
          Length = 491

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 101/299 (33%), Gaps = 32/299 (10%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP  A++T++   H   F   ++   A  E    L + G + L  D      L   + A 
Sbjct: 204 RPQSAIVTSLEFDHADIFVDRDDYRGAFEEFVGRLPRDGQLALCGDAPAVRALADHTRA- 262

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++G + + D +              +++     EV     G H  QN L    +
Sbjct: 263 ---PVRTYGLAPSNDIRAEALTPTGSGLSFTLRMGRHREEVRLPLPGRHNVQNALAAALL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                    T    L+ F    G  KR +    +    L+ + +  +P ++ A +  L  
Sbjct: 320 ARREGVSPSTIAAGLASF----GGMKRRQQVRGRPNDVLVVDDFAHHPTAVAATVEALR- 374

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
            + H + R +A+          S+    + A   +      V+L    V    DA     
Sbjct: 375 -AAHPDRRLVAIFEP---RSNTSRRTRFEAAYGTAFDAADRVFLKAPPVRHNDDADAMLD 430

Query: 420 ----------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLL 464
                     R +     E +D +   +  +L  GDV ++  SN   F     RL + L
Sbjct: 431 PTAVAHTIRDRGVPAEVFEDVDAVLPTLTDTLQPGDVALLM-SNG-RFGGLPERLPDAL 487


>gi|281424945|ref|ZP_06255858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
 gi|281400789|gb|EFB31620.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
          Length = 443

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 116/358 (32%), Gaps = 34/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      +  ITGS GKTTT  ++     S        G+    + + +   
Sbjct: 90  ISEIEFAGRYTHSKMVC-ITGSNGKTTTTSLIYHIFKSAGYDVGLAGNIGKSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 146 -AEDPHEYYVIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-M 272
            +      +     DD   +    K         +S  K K +             ++ +
Sbjct: 201 IQNQTPEDSFIYWNDDPVIKKELEKFEIKAYACPFSELKEKGS------IGYIEAGTYKL 254

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E        +      G H   N L      +I     +   K+LS F   E    R   
Sbjct: 255 EYPTPFNMEQEALSLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVE---HRLEK 311

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    I++S   N  +   A+  +           + +LG     G+   + +  +
Sbjct: 312 VCKVGGVQYINDSKATNVDACWYALESMKT-------PTVLILG-----GKDKGNDYTPI 359

Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E++       V+L G     L D      + V  + +M             GD V++
Sbjct: 360 KELVKKKCRGLVYL-GADNKKLHDNFDALGLPVKDTHSMKDCVEACHEMAKSGDTVLL 416


>gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
 gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 131/377 (34%), Gaps = 46/377 (12%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V  +S DS+++ P   F   KG  +    ++L A +KGA + V            ++P
Sbjct: 36  REVRLVSCDSQTVVPGTLFIC-KGAAFK-PQYLLDAAEKGAFVYVSERRW----PECALP 89

Query: 85  VFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-----SSIKKTY 137
              V D+    AL           +  I  ITG+ GKTTT   L   L     S  K+  
Sbjct: 90  CILVSDIRRSMALLADRAWNHPSGRLHITGITGTKGKTTTAYFLKSMLDEWRRSQGKRES 149

Query: 138 ACIGSYNN-----------HIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL 181
           A + +                  PL L R   +      ++   E+    L   R  T  
Sbjct: 150 AILSTMITDDGVERRPAKLTTPEPLDLQRHLWNAAECGAEYLTMEVSSQALKYHR--TGG 207

Query: 182 VRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           V   + V   I   H+S       E+  ++K  IF    ++    +N D  F E +   +
Sbjct: 208 VEFSVGVFLNIGEDHISPVEHPDFEDYFASKLMIF---RQSAAACVNLDSDFAERIL--T 262

Query: 240 HALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A     IY+F      AD    + ++  + +   V+    + E+     G    +N L 
Sbjct: 263 AAESCSKIYTFSTKFSTADIYASEIRRDGDATRFLVRTPRYTRELSMGLPGSFNVENALA 322

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L           +        G+        G  T+I + Y  N  S++A   
Sbjct: 323 AVAAAEALGVPESAVA---AGLAEATVPGRMETFNTPDGKLTVIVD-YAHNGMSLEAL-- 376

Query: 359 VLSQISPHGEGRRIAVL 375
            LS +     GR++ VL
Sbjct: 377 -LSSVRREFPGRQLTVL 392


>gi|239994437|ref|ZP_04714961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii ATCC 27126]
          Length = 510

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 130/397 (32%), Gaps = 53/397 (13%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              + V G  ++   LN     A       ++ ITGS GKTT   ++   L +       
Sbjct: 98  KCGVEVIGDVELFARLNASTSDA--TPAKRVVGITGSNGKTTVTLLVNHLLKNCGVKSIE 155

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+    +     L  +  D D  + EL    L      T  +    A +  I+  HL  
Sbjct: 156 AGNVGRPV-----LEALQSDADVVVMELSSFQL----ETTSSLVLEAATVLNISDDHLDR 206

Query: 200 FSGIEEIASAKAEIFEGLE--------------------KTGTIFLNYDDSFFELLKAKS 239
              +E    AK  IF+  +                      G    N          +  
Sbjct: 207 HGTLEAYIDAKHRIFDNAKSAVVWRDGEFVAPYEQLITDAKGIAASNAVSDGESNAASNE 266

Query: 240 HALGIKTIYSFGKSKN------ADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHM 292
            +L  K I  +G  ++      A F      +  EQS ++  + +        H  G H 
Sbjct: 267 ESLASKNIVEYGLGESTTGFAIASFDGDDSARDDEQSLYITFKDEKLIALSDIHLAGMHN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N++  LGI   L      A+K L  F        R            ID+S   N  +
Sbjct: 327 VLNIMAALGICLQLGVSPALAVKHLRSFKAAP---HRCVEIARVNDIRYIDDSKATNIGA 383

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             AA+  L   +P  +G+ I + G     G+   +    L+  L+ Y +SHV+  G    
Sbjct: 384 TVAALEGL---APTIQGKLILIAG-----GDAKGADIASLSPYLTKY-VSHVFALGKDAH 434

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + +   +  V    TM             GDVV++
Sbjct: 435 LFEKSFAHTTRV---ATMKDAVKAATRLAAPGDVVLL 468


>gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 449

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 127/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIVYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++   V+ ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRVMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122251657|sp|Q01Q46|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 442

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 119/344 (34%), Gaps = 34/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K   I ITGS GKTTT  +    L          G+    +   +  +R   D  + + E
Sbjct: 101 KGRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPVTAMVESSR---DDGWNVLE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I    H  R HI +   +   HL      E  A+ K  +FE  +      LN
Sbjct: 158 LSSFQLETI----HEFRAHIGLALNVTQNHLDRHHTFENYAAIKGRLFETQQAGDYAVLN 213

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D       A++ A    T+  F   K  D        C  +  +  +L  ++ E    
Sbjct: 214 AEDPVCVAYAARTRA----TVQWFSSRKKVDPGAT---LCGNKLVLFGKLLMEAGE--IP 264

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L      S    +      A+  F   E R +  R            + Y
Sbjct: 265 IRGRHNIENVLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFVRKLNG-------VDFY 317

Query: 347 NAN-PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           N +   S+ A +  L        G    +LG     G+     +  L E L+    + + 
Sbjct: 318 NDSKATSVDATLKALDAFP----GGLWVILG-----GKDKGLDYAALREPLTEKARAALL 368

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +       + + +  ++ +  ++T+DG      +    GD V++
Sbjct: 369 IG-AAAGKIAEQIAGAVPLVDAKTLDGAVRHAFAHAAPGDTVLL 411


>gi|167630126|ref|YP_001680625.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592866|gb|ABZ84614.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 465

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 117/348 (33%), Gaps = 38/348 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  IAITG+ GKTTT  ++   L +  +     G+    +       R+  D  + + E+
Sbjct: 110 APFIAITGTNGKTTTTSLVGAILKAAGRNPFVGGNIGQPLVEEA--QRLTAD-RWVVAEV 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T    P  ++I  I P HL     +E   + KA IF          LNY
Sbjct: 167 SSFQL----ETTDQFHPRASLILNITPDHLDRHGDMENYRAIKARIFRNQGSEDITVLNY 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME----V 283
           DD     L A   +     +  F +      Q  +     +   +        M      
Sbjct: 223 DDPLVRTLAADCRS----RVLFFSR-----LQKMEHGAYVDGGMIRFAGPEGDMAVAAVD 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L    +   L        +A+  F P E    R            ++
Sbjct: 274 RLQIKGAHNVENALAACALTVGLGIAPAVVAQAMIDFQPVE---HRMEPVGTVEGVAYVN 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP +   AI          +   I + G   +  + S     +LAE++    +  
Sbjct: 331 DSKGTNPDASIKAIES-------YDRPVILIAGGKNKGSDFS-----ELAEIIKKR-VKA 377

Query: 404 VWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     L+ AL ++    +   +T D   L        GDVV++
Sbjct: 378 VVLVGQAAPVLEAALRKAGVEAIKLVDTFDATVLEAAQMAEPGDVVLL 425


>gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus sanguinis SK36]
 gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
           putative [Streptococcus sanguinis SK36]
          Length = 481

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 170/476 (35%), Gaps = 72/476 (15%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + IS DSR       FF +KG  +   +F+  AV  G    +  TD       + IPV 
Sbjct: 35  FDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSVGLRFYISETDF-----QVGIPVL 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+DV  A++   +        K  ++A TG+ GKTTT       LS      A + + N
Sbjct: 88  LVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTAYFTYQILSQS-HRPALLSTMN 146

Query: 145 NHIG-----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +                  + +    +  D    I E+       ++   + +   + 
Sbjct: 147 TTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLIMEVSSQAY--LKKRVYGLTFDVG 204

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V   I+P H+        E+    K  + +    +  + +N     F+++K +  +L   
Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVIVNSGMDHFQIVKEQVASL--- 258

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
                   ++  +         +      +  GK +       IG    +N +       
Sbjct: 259 --------EHDFYGADSSNTIKDSQAFSFEATGKLAGNYDIQLIGRFNQENAVAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   K ++        G+        G    +D  Y  N  S++  +SV+ +  
Sbjct: 311 RLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFVD--YAHNGVSLRNLLSVVEE-- 363

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
            H +G+ I +LG     G   +S   D   +L+ +    V L+         LA+ + + 
Sbjct: 364 -HQKGKIILLLGA---TGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIA 419

Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVV--KSSNSCGFYRLINLLLEEFP 469
             I  +  E +      I+ +L     +GD V++  K +++   Y+++      +P
Sbjct: 420 SYIS-YPVEKIADREEAIKKALSLTEREGDAVILAGKGADA---YQIVEGEKVAYP 471


>gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 455

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 140/434 (32%), Gaps = 72/434 (16%)

Query: 60  AVQKGAG---LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           A++ G      ++V +    +      P   + +    L K+ + +       I+ ITG+
Sbjct: 24  ALENGVVKEEALLVRSKQNMAFIPSDFPQENLIESCD-LGKVLLDSIPGENPRIVGITGT 82

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---------TLARMPVD-------- 159
            GKTTT  ++   L  +    A +G+    I             ++  +  +        
Sbjct: 83  NGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFAKAKG 142

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ I E+    +  I+     +   + ++T I   HL     +EE    K   FE   +
Sbjct: 143 CDYFIMEVSSHAI--IQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFE---E 197

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N D+ +           G   ++ +G  K     +  +     +S ++  +  +
Sbjct: 198 RGLKLINADEKY----AQCQDQYGDIGVFYYGVEKKGHLSVGAYAL---ESGIDAHIAWR 250

Query: 280 SMEVVHH--------GIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRY 330
             +              G H   N L  +  V IL    +    +A+  F    GR +  
Sbjct: 251 DNKECSQESCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVV 310

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     L+   +      MK               ++IAV+      G+  +S   
Sbjct: 311 HHK------PLVIVDFAHTHDGMKQIFESFRH-------QKIAVV--FGAGGDRDKSKRP 355

Query: 391 DLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIH----VHYSETMDGLFLFI 437
            +      Y    ++++  +  +         +   LP+       V   +    +   +
Sbjct: 356 KMGACAFEY-ADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQAL 414

Query: 438 QSSLVDGDVVVVKS 451
            + L + +V+++  
Sbjct: 415 -NELQENEVLLILG 427


>gi|312865978|ref|ZP_07726199.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus downei F0415]
 gi|311098382|gb|EFQ56605.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus downei F0415]
          Length = 443

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/489 (16%), Positives = 160/489 (32%), Gaps = 90/489 (18%)

Query: 1   MNPL-WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+ L    H +   +QG  +         + Q  +  +  D+++I       A      D
Sbjct: 15  MSALALMLHQMGYQVQGSDVDKYYFTQRGLEQAGIKILPFDAKNITADVELIAGNAFRED 74

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            +  + +A+Q G                           L             ++   + 
Sbjct: 75  NNVEVAYAIQNG---------------------------LAFKRYHEFLGEFMNQFISLG 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE      
Sbjct: 108 VAGAHGKTSTTGLLSHVLRNITDTSFLIGDG---------TGRGSKNSQYFVFEA----- 153

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E         P  ++IT +   H   F+ I+++ SA  +  + ++K   +F+  +D + 
Sbjct: 154 DEYERHFMPYHPAYSIITNVDFDHPDYFTSIDDVFSAFNDYAKQVQKG--LFVYGEDPYL 211

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291
             + + +       IY +G  +N DF      + +  S  +V+  G+ +   H    G H
Sbjct: 212 RKITSSA------PIYYYGFEENDDFVAYDIVRTTHGSDFKVKHDGEVLGNFHVPAFGRH 265

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +  + I   ++D   + L  F+  +   +R+   +     T+I + +  +P 
Sbjct: 266 NILNATAVIANLYIAGFNMDLVTEHLKTFNGVK---RRFTEKIVND--TVIIDDFAHHPT 320

Query: 352 SMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYN 400
            + A +    Q            PH   R IA+L +       + S +   +       +
Sbjct: 321 EIVATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFALALNEADSVYLAQIYGSARERD 380

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
              V      V  L   + +   V   E +  L         D  V V   +        
Sbjct: 381 NGQV-----KVEDLAAKIKKPARVVTVENVSPLLDH------DNAVYVFMGAGDIQLYER 429

Query: 458 --YRLINLL 464
               L+  L
Sbjct: 430 SFEELVASL 438


>gi|268316395|ref|YP_003290114.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
 gi|262333929|gb|ACY47726.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
          Length = 504

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 129/390 (33%), Gaps = 37/390 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +      L+ +  ++ + G+ GKTTT  +L   L          G +   + +    +
Sbjct: 117 LPEALAHFFLQYRQPVV-VAGTHGKTTTAGLLAHVLDRAGLD---PGFFIGGVMIGAETS 172

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                  + + E               +  RP   ++T+I   H   +  +++   A  +
Sbjct: 173 GRVGSGPWFVVEGDEYDSAYFDKRPKFLHYRPEAVLLTSIEFDHADLYDDLDDYREAFEQ 232

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   L   G +  + DD     +     A     + ++G     D  + +     E    
Sbjct: 233 LVALLPPEGLLVAHGDDPTVRQVARSCRA----QVRTYGLHTLCDVTVGQVYPTFEGQHF 288

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            + + G+ +        G H  +N L        +    +   + L+ F    G  +R  
Sbjct: 289 TLIVDGRELGRFFLPLSGRHNLRNALAVCAFGLEIGLSPEQLREGLAGF---PGMKRRLE 345

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G   ++D+ +  +P +++  +    Q  P  + R +A+          S+    +
Sbjct: 346 VRGEAGGVLVVDD-FAHHPTAVRETLRAARQRWP--DRRLVAIFEP---RSNSSRRKRFE 399

Query: 392 LAEVLSLYNISHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQ 438
            A + +  +   VWLS                         R I  H +E  D L   + 
Sbjct: 400 QAYMEAFDDADEVWLSMPPFRHNDRPEDFFDPESVAAGIRARGIPAHVAEGADVLLPLLL 459

Query: 439 SSLVDGDVVVVKSSNSC--GF-YRLINLLL 465
            +L  GD+ ++  SN        RL++ L 
Sbjct: 460 EALRPGDIALIM-SNGAFGNLHERLLHALQ 488


>gi|295398675|ref|ZP_06808699.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
 gi|294973110|gb|EFG48913.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
          Length = 462

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 143/417 (34%), Gaps = 47/417 (11%)

Query: 49  PHYDGHDFILH----AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--- 101
            + D    I       V  G  + +++ D    + +  IP      V      L V    
Sbjct: 48  ENKDAQALIEENNARVVAGGHPVSLLDEDFAFMVKNPGIPFNNPMVVRAQEIGLPVYTDI 107

Query: 102 --ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPV 158
             A   + ATII ITGS GKTTT  ++   L     + A       +IG+P L +A    
Sbjct: 108 ELADKMTDATIIGITGSNGKTTTTSLVGEMLGKAA-SLAGESYVGGNIGIPSLDIASKAE 166

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  I EL    L      T   +PHIA IT I  AHL     ++   SAK +I     
Sbjct: 167 ADDRLILELSSFQLMG----TDAFQPHIAAITNIYAAHLDYHGSMDGYISAKWQITANQT 222

Query: 219 KTGTIFLNYD--DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
               + LN D  D F +            T+  F  +     Q        +        
Sbjct: 223 TDDFLILNADQMDVFGDRTTKA-------TVVPFSAT---TIQPDGAWFDQDSQNFIWHD 272

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G+H  +NML+ + I  +L    +     +S FH  +    R +     
Sbjct: 273 EIVLNRKDFFLPGHHNLENMLVAVAIGKLLGISNEEIKNGVSTFHGVK---HRLQFVAEI 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N  +   A+   SQ   +     +  L    + G        ++ E+ 
Sbjct: 330 DGRRFYNDSKATNNDASITALDSFSQKQDN-----VIWLAGGLDRGN-------EVTELA 377

Query: 397 SLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV 449
              + +  + + G         L ++  +   + ++ +   ++++      GD +++
Sbjct: 378 DHMDRVKGMVVFGQAADKFA-GLGQNKGLTAIQQVEWIEEAVKAAYDMSAPGDTILL 433


>gi|167755735|ref|ZP_02427862.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
 gi|167704674|gb|EDS19253.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 42/359 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLAR 155
           ++ +A ++  K   I +TG+ GKTTT  ++   L    +     G+    +  V L    
Sbjct: 97  EIELAFQVAKKQHYIGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGTPLCDVVLDNDL 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  + + E+    L +I       +P+++ I  + P HL   + ++E  ++K  I++
Sbjct: 157 LNEENHYVVIEMSNFQLLDIERF----KPYVSTIINLTPDHLDYMASLDEYYASKTNIYK 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +      +N DD        K      +   +      AD  +++ +    +  + + 
Sbjct: 213 NTDLDDYFVVNLDDKTVMEYLEKYPVPCNQ--VTMSLIHEADCMIKE-QAIYYRDELIIN 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L           +G H  QN++  + I       V    + ++ F   E    R      
Sbjct: 270 LAD------IKVVGRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVE---HRIEFVRE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + ++S   N  +   A+    Q         I ++G   +  +L++         
Sbjct: 321 INGVKIYNDSKATNTDATIIALKAFEQ-------PVILLMGGFDKGLDLTE--------- 364

Query: 396 LSLYN--ISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV 449
           ++ Y   ISH+   G    A  +     +HV      E ++   L        GD++++
Sbjct: 365 MATYGNKISHLVTFG----AAGERFKNDMHVANSSSVENLEAATLLAIEKAKAGDIILL 419


>gi|332975055|gb|EGK11961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella kingae ATCC
           23330]
          Length = 451

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 128/374 (34%), Gaps = 35/374 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
            K  ++ I G+ GKTTT  ML   L          IG    +  V   L +   D  F +
Sbjct: 103 HKMWVLGIAGTHGKTTTASMLAWVLEYAGYGAGFLIGGVPQNFSVSARLPQ--NDSAFFV 160

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +   G 
Sbjct: 161 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLHAIQTQFHHLVRTVPNQGL 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I  N      E L           I  FG    A +Q+            +V  +G+ + 
Sbjct: 221 IVANG---REESLHETIERGCWTPIEWFG--NQAGWQIANVGADG---SFDVHFKGEHVG 272

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G H   N L  +     +   V  A +ALS F   +   +R      +   T+
Sbjct: 273 HIAWELLGEHNRMNALAVIAAARHVGVSVQAACEALSQFKNVK---RRMEIKGVENGVTV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P ++   ++ L      G  R IAVL      M  +G +  +         S
Sbjct: 330 YDD-FAHHPTAITTTVAGLR--DKVGAARIIAVLEPRSNTMK-LGTMKTALSG------S 379

Query: 398 LYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L N   V+    G         +P    +H  +  D     I ++   GD ++V  SN  
Sbjct: 380 LKNADQVFCYTGGVDWDVADALVPLGNKLHVGKDFDEFVNAIVAAAKSGDHILVM-SNG- 437

Query: 456 GFYRLINLLLEEFP 469
           GF  + + LL +  
Sbjct: 438 GFGGIHDKLLAKLK 451


>gi|312868758|ref|ZP_07728950.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus oris
           PB013-T2-3]
 gi|311095744|gb|EFQ53996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus oris
           PB013-T2-3]
          Length = 435

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 30/270 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I I G+ GKT+T  +L+  L++++ T   IG           + +   D  F +FE
Sbjct: 102 DHTSIGIAGAHGKTSTTALLSHVLAAVEPTSYLIGDG---------VGKGNDDDRFFVFE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   + +      P  A++T I   H   F  I+++  +       ++K   IF  
Sbjct: 153 ADEYRDHFLAY-----HPDYAIMTNIDFDHPDYFKDIDDVRGSFETYGRQVKK--AIFAW 205

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD+    L           +Y +G   + DF+    ++    S  +   + + +     
Sbjct: 206 GDDANLRKLDVDV------PVYYYGTGADDDFRAENIRRTPAGSTYDAYFRDRKLGTFTI 259

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N L  L +  +   D+D   + L+ F   + R      A ++     + + 
Sbjct: 260 HLYGEHSILNSLAVLAVAYMEKVDMDKIKQELANFSGVKRRFSETDVADDK-----LIDD 314

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL 375
           Y  +P  +KA I    Q  P  E   +AV 
Sbjct: 315 YAHHPNEIKATIDAARQKFPDKE--IVAVF 342


>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
 gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
          Length = 436

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 124/362 (34%), Gaps = 39/362 (10%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            ++   L           +  + A+TGS GK+T   ML  A  ++       G+    + 
Sbjct: 82  KNIHATLMNDVELFARLIEKPVAAVTGSNGKSTVVTMLADAARAVGLKTQLCGNIGKSVL 141

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                     + D  + EL    L         +   + V+  + P HL  +    +  +
Sbjct: 142 TAW--LEDEEEPDLYVLELSSYQL----ERCPSLMIDVGVVLNVTPDHLDRYDSFLDYVA 195

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+ + +  + T    LN DD +   +      L  +T++         F  +   +   
Sbjct: 196 AKSHLAQQTQLT---ILNGDDEYCRQMA----PLSRQTVF---------FGAQCVNRVEN 239

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            + + V  Q           G H A N L+ L + S L  D+   ++AL  F    G   
Sbjct: 240 GAII-VNGQTVLTADELKIHGQHNAYNALVALLMASGLGIDISYTLEALKNF---RGLPH 295

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R            +++S   N AS  AA+                ++G +       Q F
Sbjct: 296 RMCEVACFNDVLWLNDSKATNIASTAAAL-------VGCTRPTWLIVGGVG----KGQDF 344

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  LA VL    I HV + G     +  A  + +I  H   T+     +   +   GD V
Sbjct: 345 H-QLAAVLLQAPIKHVLMIGVDNHTMIAAFKKANIAFHDCGTIKAAVSYAYQNADAGDQV 403

Query: 448 VV 449
           ++
Sbjct: 404 LL 405


>gi|325102889|ref|YP_004272543.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter saltans DSM 12145]
 gi|324971737|gb|ADY50721.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter saltans DSM 12145]
          Length = 453

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 127/369 (34%), Gaps = 51/369 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  +   L      IA+ G+ GKTTT  ++T  L           ++   I V      +
Sbjct: 103 RSQILGLLSRGMFTIAVAGTHGKTTTSCLITHLLRHGGNQC---SAFLGGISVNYYTNLI 159

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + +  + E       E       + P+IAVIT++   HL  +     +  +       
Sbjct: 160 IGENEVMVVEA-----DEYDRSFLTLHPNIAVITSMDADHLDIYGDKSHLTESFELFASQ 214

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++  GT+FL            +      +++ ++   ++AD +    +   E        
Sbjct: 215 VDSGGTVFL------------RKGLDVKQSVSTYAIEQDADAKAVNIRV--EDGEFRFDF 260

Query: 277 QGKSMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               +E+   V    G H  +N +  + +   +          L  F   +   +R+   
Sbjct: 261 SNDEIEMKDLVLGLPGQHNIENAVAAIQVALKMGISQQDIKSGLKSFKGVK---RRFEYI 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +    F  ID+ Y  +P  ++A    +  + P    +  A+      +   ++ F    A
Sbjct: 318 VKTDAFVYIDD-YAHHPEELRACFRAVRTLYP--TRKFTAIF--QPHLFTRTRDFIDGFA 372

Query: 394 EVLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS---- 440
           EVLS         +Y    + + G +   L D +          T D +  FI++S    
Sbjct: 373 EVLSSVDELILLEIYPARELPIEGINSQFLLDKITLENKKLL--TKDEVLKFIKNSEPEL 430

Query: 441 ---LVDGDV 446
              +  GD+
Sbjct: 431 LVTVGAGDI 439


>gi|296101251|ref|YP_003611397.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055710|gb|ADF60448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 438

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 133/347 (38%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A +IAITGS GK+T   ++     +  K     G+          L  +    +  
Sbjct: 101 REAQAPVIAITGSNGKSTVTTLVGEMAKAAGKNVGVGGNIGLP-----ALMLLDKGCELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG +   D+ L    +   ++W+ V+ +     
Sbjct: 209 CVVNADDALTMPVRG-----ADDRCISFGITMG-DYHL---NRQLGETWLRVKGEKVLNV 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     ++++AL+ F    G   R++ AL       I
Sbjct: 260 KEMKLSGQHNYTNALAALALADAVGLPRSSSLQALTTFT---GLAHRFQLALEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       EG    +LG     G+   +    L + LS  NI 
Sbjct: 317 NDSKATNVGSTEAALNGL-----QVEGTLHLLLG-----GDGKSADFTSLKQYLSGDNI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L +  P       +ETM+     I   +  GD+V++
Sbjct: 366 RLYCFGRDGRELAELRPE--IAEQTETMEQAMRLIAPRVKPGDMVLL 410


>gi|229047597|ref|ZP_04193187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
 gi|228723844|gb|EEL75199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 129/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K ++S  K       ++            +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSK--GQKILFSTTKENEDGACIKDNA---------LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 IEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|167740315|ref|ZP_02413089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 14]
          Length = 189

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLID 343
            + +G H A+N L            +      L  F P +GR +  R A       T+ID
Sbjct: 1   LNALGEHNARNALAATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVID 60

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++        I  
Sbjct: 61  DTYNANPDSMRAAIDVLAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDA 116

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           ++  G       DA       H+ +    +   + ++      ++VK S      R+++ 
Sbjct: 117 LFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDA 175

Query: 464 LLEE 467
           L  E
Sbjct: 176 LANE 179


>gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
 gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/469 (15%), Positives = 151/469 (32%), Gaps = 70/469 (14%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             I+I+S+ + P   F   KG  +   +++  A+ +GA + +           + IP   
Sbjct: 33  THITINSKDVVPGTFFVC-KGASFK-EEYLKSAISQGAIVYLSQQKY----DGVDIPYII 86

Query: 88  VDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-IKKTYACIGSYN 144
           V D+  A  L             T + ITG+ GKTT   ++   L        A   ++ 
Sbjct: 87  VSDIRKAMALAARWFFGNPGDNLTKVGITGTKGKTTVTFVMKDILDKYTDNRCAAFSTHE 146

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             +G  +    +                       I E+    +   R   +     + V
Sbjct: 147 IDVGTKVFETTLTTPEPIELQTYFDMAVNEGCTHCIMEVSSQAMKMNRI--YGEHYKVGV 204

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            T I   H+S    + +E+    K      L++   + L  D  +FE +  +      K 
Sbjct: 205 FTNIDYDHISPTEHASMEDYLGCKVSF---LKQCDNVVLYSDTRYFETIYNEVR---DKH 258

Query: 247 IYSFG--------KSKNADFQ--------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +  +G         S++ DF         +         S+ E+   G++     + IG 
Sbjct: 259 VVVYGSKESVEKLMSRDDDFFEKDTEFASIHNEDLTDHNSYFELIYGGENRAYNTNLIGD 318

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +  +N++  +    ++    +    ++   +       R +    +    +ID  Y  N 
Sbjct: 319 YNVENIVAAIISSLLIGIPNEQIRSSIRDIYVPG----RLQVYHWKDRTFMID--YAHNY 372

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM     ++ +     + + I V+      GE  +    D+  +   Y    V      
Sbjct: 373 ISMYRLYEMVKKT---MKPKSITVV--FGCGGERYKKRREDMGRLAEQYADKVVLTMEDP 427

Query: 411 VLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                + + + I  + ++        +            G++V+   K 
Sbjct: 428 GFESCEDICKEIKQYITKPCYIIVDREEALTRALDEAQPGELVITTGKG 476


>gi|116627173|ref|YP_819792.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           LMD-9]
 gi|122268224|sp|Q03MH6|MURC_STRTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116100450|gb|ABJ65596.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           LMD-9]
          Length = 442

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 132/374 (35%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T   + G+ GKT+T  +L+ ++ +I  T   IG             R  
Sbjct: 93  HEFLGHFMNQFTSFGVAGAHGKTSTTGLLSHSMKNITDTSYLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ I+++ SA  +  + +
Sbjct: 144 ANAQYFVFEA-----DEYERHFMPYHPAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +DS    + + +       IY +G  +N DF      + +  S  +V+  
Sbjct: 199 QKG--LFVYGEDSNLRKITSNA------PIYYYGFEENDDFMATDIIRTTTGSNFKVKHD 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ + E      G H   N    +  + +   D+    + L  F   + R      +   
Sbjct: 251 GQIIGEFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKIISD-- 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D  E    + 
Sbjct: 309 ---TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  LA++  S   + H       V  L   + +   V   E +  L         D  
Sbjct: 366 AVY--LAQIYGSAREVDH---GDVKVEDLAAKINKPAKVVTVENVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           + V   +     Y 
Sbjct: 415 IYVFMGAGDIQLYE 428


>gi|91203776|emb|CAJ71429.1| similar to UDP-N-acetylmuramate:L-alanine ligase MurC [Candidatus
           Kuenenia stuttgartiensis]
          Length = 471

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 117/361 (32%), Gaps = 48/361 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           IA+ G+ GKTT   M+   L       T    G   N++           D D    E  
Sbjct: 121 IAVGGTNGKTTVSSMVGYVLDHAGMSPTIIVGGCIKNYLTPDFPGNAKVGDSDIVAIEAD 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    + +      P I++IT ++  H      IE I+       +       + +N D
Sbjct: 181 ESDGSIVNYT-----PKISIITNMSKDH----KPIESISKLFETFSQNTR--DLLIINDD 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + +  +      K   +FG  K+AD            S  ++   G+S E      
Sbjct: 230 CPELKKIPFR-----HKNTITFGLRKSADIYASNIINRPCLSTFDIN--GQSFE--LKLP 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   +    +      +  +  +G  +R           +ID+ +  
Sbjct: 281 GIHNVSNALAAISVARHMNIKDNEIA---AALYEYKGVQRRMDNIGEYNGIKVIDD-FAH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-----LAEVLSLYNI-- 401
           NP  + AAI  +      G  R IAV       G     F  +       + LS  ++  
Sbjct: 337 NPEKIAAAIRAVK----IGGNRVIAVFQPH---GFFPARFMREELINAFIQSLSPEDVLF 389

Query: 402 -SHVWLSG-------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              ++  G            +++      +  + E    +   I  ++  GD ++V  + 
Sbjct: 390 MPEIYYIGGSVSKEISSADLIREIGKSGRNAFFVEKRGDIIPEIVRTVEKGDCILVMGAR 449

Query: 454 S 454
            
Sbjct: 450 D 450


>gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 130/353 (36%), Gaps = 41/353 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   KK     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLAFEMLKEGKKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     + +P IA    +  AHL      EE   AKA IF+   +T 
Sbjct: 163 VVVTELSSFQLMGVE----MFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A+S    +     F  +K     +       E +   +  +G+ +
Sbjct: 219 YSVINADDADVMTLSAQSKGQKVL----FSTTKE----IEDGAYIKENA---LYYKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 AEVSDIVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS---SLVDGDVVVV 449
           ++  +   G     L  A  ++  +   E++D L   +        DGDV+++
Sbjct: 371 HVKAIVTFGQTAPKLVRAAEKAG-LDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|225028113|ref|ZP_03717305.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
 gi|224954583|gb|EEG35792.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
          Length = 453

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 125/353 (35%), Gaps = 46/353 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I AITG+ GKTTT  ++   L    K+   +G+         ++A    +      E
Sbjct: 108 KGKIAAITGTNGKTTTTALVGSILREYYKSVFVVGNIGIPFT---SVALDTTEDSVIAAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L      T   +P ++ +  + P HL     +E  A  K  I +   K   I LN
Sbjct: 165 ISSFQL----ETTIDFQPEVSAVLNVTPDHLDRHGTMEVYADTKFSISKKQNKEQVIVLN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
           YDD     +  K+ A  +     F + +  D                ++  GK + V   
Sbjct: 221 YDDPITREMAKKATARPVM----FSRLEELD-----EGIVLRGDTFIIKEDGKELPVCTT 271

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N+L  +GI   +   V+    A+  F   E    R             
Sbjct: 272 SEIKLLGSHNHENILAAIGITYYMGVPVEQIRDAVMKFTAVE---HRIEYVDTVDGVDYY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE----MGELSQSFHIDLAEVLSL 398
           ++S   NP    AAI  +S ++     +   +LG   +      E   +FH  +      
Sbjct: 329 NDSKGTNPD---AAIKGISAMT-----KPTILLGGGYDKKSTYDEWIDAFHGKV------ 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ + G    A+ D        +V +++T +      +     GD V++
Sbjct: 375 ---RYLIVMGATAQAIADTAKNHGFHNVIFADTFEEAMNIAKEKARPGDAVLL 424


>gi|237734701|ref|ZP_04565182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mollicutes
           bacterium D7]
 gi|229382029|gb|EEO32120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coprobacillus
           sp. D7]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 42/359 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLAR 155
           ++ +A ++  K   I +TG+ GKTTT  ++   L    +     G+    +  V L    
Sbjct: 97  EIELAFQVAKKQHYIGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGTPLCDVVLDNDL 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  + + E+    L +I       +P+++ I  + P HL   + ++E  ++K  I++
Sbjct: 157 LNEENHYVVIEMSNFQLLDIERF----KPYVSTIINLTPDHLDYMASLDEYYASKTNIYK 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +      +N DD        K      +   +      AD  +++ +    +  + + 
Sbjct: 213 NTDLDDYFVVNLDDKTVMEYLEKYPVPCNQ--VTMSLIHEADCMIKE-QAIYYRDELIIN 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L           +G H  QN++  + I       V    + ++ F   E    R      
Sbjct: 270 LAD------IKVVGRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVE---HRIEFVRE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + ++S   N  +   A+    Q         I ++G   +  +L++         
Sbjct: 321 INGVKIYNDSKATNTDATIIALKAFEQ-------PVILLMGGFDKGLDLTE--------- 364

Query: 396 LSLYN--ISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV 449
           ++ Y   ISH+   G    A  +     +HV      E ++   L        GD++++
Sbjct: 365 MATYGNKISHLVTFG----AAGERFKNDMHVANSSSVENLEAATLLAIEKAKAGDIILL 419


>gi|262170518|ref|ZP_06038196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
 gi|261891594|gb|EEY37580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
          Length = 451

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 143/413 (34%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMVAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D       A     G  +
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEAL----ADVFKRGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   +  ++Q  K    ++ S   V L G+ + +V    +G H   N LM +     
Sbjct: 237 ETEFS-GEQGEWQAEKI--TADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R           + D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVAVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALP 419
            G+ + IAVL      M  +G   ++         SL++   V+L     +  ++++   
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
           + +     S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCAQPAQVSANMDEFVAMIAKEAKAGDQILVM-SNG-GFEGIHGKLMAALQQK 451


>gi|289574835|ref|ZP_06455062.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
 gi|289539266|gb|EFD43844.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
          Length = 437

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 115/324 (35%), Gaps = 28/324 (8%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E   S    +++      PH+AVIT I   HL  +  +E   +      E +   
Sbjct: 108 DCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPG 162

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQG 278
           G + +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  
Sbjct: 163 GALVVCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 221

Query: 279 KSME------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +         +     G HMA N L  L     + A  D  +  L+ F     R +    
Sbjct: 222 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 281

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    + + Y  +P  + A ++    +   G+G R  V+     +   +++F  + 
Sbjct: 282 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEF 340

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                      VL +Y      L+G    ++ + +  ++ + Y      +   + ++   
Sbjct: 341 GRALNAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASP 398

Query: 444 GDVVVVKSSNSCGF--YRLINLLL 465
           GDV+V   +         ++  L 
Sbjct: 399 GDVIVTMGAGDVTLLGPEILTALR 422


>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
 gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
          Length = 443

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 115/351 (32%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  ++              G+  N + + +         
Sbjct: 95  FAGRYTNSKMICITGSNGKTTTTSLIYHIFKDAGYDVGLAGNIGNSLALQV----AEDPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            + I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I +   K
Sbjct: 151 AYYIIELSSFQLDNM----YNFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQNQTK 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     DD   +    K     +   +S  K   +   + + +   EQ          
Sbjct: 207 DDSFIYWNDDPVIKKELKKYDVHAVCYPFSELKEHGSIGYIEEGQYKIEQPE-----PFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L      +I     ++  K+LS F   E    R          
Sbjct: 262 MEQEDLSLTGRHNIYNSLAAGIASNISGIKKESIRKSLSDFPGVE---HRLEKVCKVAGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  +   A+  +           I +LG     G+   + +  + +++   
Sbjct: 319 QYINDSKATNVDACWYALESMRT-------PTILILG-----GKDKGNDYSAIKDLVKEK 366

Query: 400 NISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     L D      I V  + +M             GD V++
Sbjct: 367 CTGLVYL-GADNKKLHDNFDSLGIPVRDTHSMKDCVTACAEMAKPGDTVLL 416


>gi|90020493|ref|YP_526320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
 gi|122063257|sp|Q21MH1|MURD_SACD2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89950093|gb|ABD80108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
          Length = 456

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 131/347 (37%), Gaps = 33/347 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             KA ++ ITGS GK+T   ++ +A  +     A  G+    IGVP+       DV+  +
Sbjct: 112 ERKAPVVGITGSNGKSTVTTLVGLAAENAGMNVAVGGN----IGVPVLDLLADADVELYV 167

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  ++      +  +A +  ++P H+  +  +     AK  I+ G +K   I 
Sbjct: 168 LELSSFQLESVKR----AQLDVACVLNVSPDHMDRYPSLAHYCQAKQRIYFGAKK---IV 220

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N +D+        +    +  +  +G S     +  +           + L G+ +  V
Sbjct: 221 YNLEDTL-------TIPPVMAGVERYGFSSKKAVEENEKHVLLNNDTNALSLNGQDVFSV 273

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L  L I            +A       EG   R +   N+   T I
Sbjct: 274 ADIKIAGAHNLKNALAALAICDAANIPFAGLKQA---LQEFEGLPHRCQWVANKNGVTYI 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AAI  L+          + + G   +  + S      L +V++ Y +S
Sbjct: 331 NDSKATNIGSAQAAIEGLAG----QFKNIVLIAGGDGKGADFS-----SLGKVINQY-VS 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++  +   +    ++T++            GD+V++
Sbjct: 381 AVVLIGVDAPKIQAVVDPQVMCVKAQTLNAAVKQAALLAKSGDLVLL 427


>gi|325269661|ref|ZP_08136274.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
 gi|324988029|gb|EGC19999.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
          Length = 498

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 114/351 (32%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  ++              G+  N + + +         
Sbjct: 150 FAGRYTDSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGNSLALQV----AEDPH 205

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            + I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I +   K
Sbjct: 206 AYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQNQTK 261

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     DD   +    K     +   +S  K   +   + + +   E+          
Sbjct: 262 DDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYKIEKPE-----PFN 316

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L       I     +   K+LS F   E    R          
Sbjct: 317 MEQEDLSLTGRHNIYNSLAAGIASGISGIRKENIRKSLSDFPGVE---HRLEKVCKVAGV 373

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  +   A+  +           I +LG     G+   + +  + E++   
Sbjct: 374 QYINDSKATNVDACWYALESMRT-------PTILILG-----GKDKGNDYDPIKELVREK 421

Query: 400 NISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     L D      I V  + +M        S    GD V++
Sbjct: 422 CAGLVYL-GADNKKLHDNFDSLGIPVCDTHSMKDCVAACASMAKPGDTVLL 471


>gi|311742797|ref|ZP_07716606.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
 gi|311314425|gb|EFQ84333.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
          Length = 467

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 150/421 (35%), Gaps = 42/421 (9%)

Query: 57  ILHAVQK-GAGLVVVNTDMVASIGSLSIPVFGVDD----VLGALNKLAVAARLRSKA--- 108
           +L A+ + GA   V +        S  I    V D    ++ AL +        +     
Sbjct: 52  VLDALARDGAVTHVGHHADHLGGVSTVIASTAVRDDNPEIVEALRRGLRLWPRSAGLRSV 111

Query: 109 ----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T +A+ G+ GKTTT  MLT AL             +    +   +A +  +   G 
Sbjct: 112 MDGHTTVAVAGTHGKTTTTAMLTCALVGAG--------VDPSFAIGAEVASLGANARRGT 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+ ++   E      +  P  AV+T +   HL  +   E  A+A  E    + +   + 
Sbjct: 164 GEVLVAEADESDGAFLVYHPAAAVVTNVDADHLDTWGTEEAYAAAFTEFIGTVAE--FVV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           L+ DD     L A +   G++ + + G + +A+ +         +S        + +  V
Sbjct: 222 LSADDPGARALAAPAAERGLEVLLA-GFADDAEVRGTDVVVDGTRSTFTAWRGRERLGPV 280

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  Q+ LM L     L AD       ++      G  +R +         +  
Sbjct: 281 ELAVPGDHYVQDALMALAAGLRLGADP---HGLVAGLATYTGAHRRMQPLGEVAGVRVY- 336

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           +SY  +P  ++A ++   Q++         V+     +   ++ F   +   LS  +   
Sbjct: 337 DSYAHHPTEIRADLAAARQVAGDDR----LVVAFQPHLVSRTRIFGAAMGAELSAADLVV 392

Query: 401 ISHVWLSGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++ ++L+            + DA+   + V     +  L   +   L  GD+++   +  
Sbjct: 393 VADLYLAREDPDPQVGAELVADAV-VGVPVLLGGAVADLPALLLDHLRPGDLLLTLGAGD 451

Query: 455 C 455
            
Sbjct: 452 I 452


>gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 438

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 135/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--IAQQTETMEEAMRLLAPRVQPGDMVLL 410


>gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 455

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 133/377 (35%), Gaps = 39/377 (10%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S  I V      +  + ++ +A R      I+AITG+ GKTTT  ++   L         
Sbjct: 82  SKRIVVLAHKKGVEVIGEIELAYRFCKSKNIVAITGTNGKTTTTTLVGEILKKQHDDVVV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+        +       +    + E+    L  I++     +P +  I  I P HL+ 
Sbjct: 142 CGNIGLPF---IDTVETSSENTIFVLEISSFQLETIKYF----KPKVGCILNITPDHLNR 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
            + +E    AK  IFE +++ G   LNYD+     L      L  + +  F K+KN    
Sbjct: 195 HATMENYVKAKMRIFENIDEAGYTVLNYDNGITRDLI----GLAKRNVIVFSKNKN---H 247

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            +      E++ +     GK+ EV+        G H  +N L  +          DT   
Sbjct: 248 FKNM-VFVEENKIYFTFGGKTQEVMKKDEIFIPGEHNLENALAAIACTLPFGVAKDTIKD 306

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  F   E    R             ++S   N  + + AIS             I + 
Sbjct: 307 VLKTFKGVE---HRIEFVTEINGIKFYNDSKGTNTDAAEKAISAFES-------PIILIA 356

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G      +  +SF      +     +  V+L G     + + L + I     E +  L  
Sbjct: 357 GG----YDKGESFERFAGLIAKK--VKKVFLLGQTKQKIANELEK-IGYQNFELVSSLKE 409

Query: 436 FIQSS---LVDGDVVVV 449
            ++ S      GDVV++
Sbjct: 410 AVEKSFEYAKSGDVVLL 426


>gi|315924910|ref|ZP_07921127.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621809|gb|EFV01773.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 480

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 143/432 (33%), Gaps = 49/432 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           I   +        V+ D        +L IP+    D LG L+++            I + 
Sbjct: 70  IGDDIDMAVFTAAVHEDNPEMIRANALDIPLVERSDYLGLLSQVF--------PKTIGVA 121

Query: 115 GSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M+   L  +       IG     IG   TL +     D+ + E       
Sbjct: 122 GTHGKTTTSSMIATLLHCAEMDPSVSIGGNIGVIGGNATLGK----SDYLVIE-----SC 172

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD-DSF 231
           E           I VIT I   HL  F  G+++I  +  +    L   G +    D D  
Sbjct: 173 EYVDSFLKTEHFIGVITNIEEDHLDYFKGGLKQIKHSFHDFGSILPPDGLMIAYGDSDDV 232

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM-EVVHHGIG 289
            +++   +       + ++G S   ++  R      E + + +    G           G
Sbjct: 233 LDVVSDLAC-----QVITYGLSDKNEWVARNITYNDEGNPFFDAYHNGTLYGRFALRIPG 287

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N +  +     L    +T  +AL  F    G  +R+      G   + ++ Y  +
Sbjct: 288 QHNVLNAMACIACADYLNIQKETVEEALDHFG---GAKRRFEFRGAVGGINVYED-YAHH 343

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P  +K  I        H   +   V        +  L   F     E +    IS ++ +
Sbjct: 344 PTELKVVIDACLN---HAHNKLWVVYQPHSYSRIYYLFDEFVKSF-EKVDKLVISEIYSN 399

Query: 408 GFH------VLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG--F 457
                       L   + ++  V          +  F+  ++   D+V+V  +       
Sbjct: 400 RETNDWDIFPEDLAKRIKQNYQVPAVVISEFADIVKFLTDNVEADDLVLVAGAGDINKVA 459

Query: 458 YRLINLLLEEFP 469
           Y L++ L E++P
Sbjct: 460 YMLVDALREKYP 471


>gi|224532317|ref|ZP_03672949.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
 gi|224511782|gb|EEF82188.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
          Length = 468

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 145/396 (36%), Gaps = 47/396 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-K 135
               L+IP+    + LG L++             I I GS GKTTT   L I  + +   
Sbjct: 92  EAKELNIPILSYPEALGELSRKYY---------SIGIAGSHGKTTTTAFLGIVFNKLGLN 142

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               +GS     G    +A +    +  I E        + F      P++ ++T +   
Sbjct: 143 PNVIVGSSVKDFGGNSAIAGIS---NIFIVETCEYKKHFLHF-----SPNMLILTNVDYE 194

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+  F   E +  A  +    L+K G + +N DD+    +K +     I  I+SFG    
Sbjct: 195 HVDFFKNYESLEDAFLQYINNLKKNGILIINSDDNNLLKIKRQISRKDI-NIFSFGSRDL 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA------- 308
           ++FQ+      +E              V    + +H   N    L  +++          
Sbjct: 254 SNFQISNIVVKNEYFCFSFL---GLHNVELKTVLFHNILNFSAALLALNLFLESNGKSIF 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D + A+K ++      G  +R      +     +D+ Y  +P  ++     L  I    +
Sbjct: 311 DFEDAVKRIA--KNYSGIKRRVEVIKEEKGVVYMDD-YAHHPREIR---DTLLGIKNFYK 364

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI----------SHVWLSGFHVLALKDAL 418
            +RI +L  M      ++ F  D  EVLS  +I             +      + L   +
Sbjct: 365 NKRI-ILDFMPHTFTRTKEFFDDFVEVLSDVDILILHNIYLSNRENFNPDELSINLFLNI 423

Query: 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            + + + ++ + +     FI+S LV GD+ +   + 
Sbjct: 424 KKINENTYFFKDVKDSINFIKSLLVSGDLFITMGAG 459


>gi|333029406|ref|ZP_08457467.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides coprosuis DSM
           18011]
 gi|332740003|gb|EGJ70485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides coprosuis DSM
           18011]
          Length = 457

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 136/374 (36%), Gaps = 39/374 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152
           + +  V   +   +  + + G+ GKTTT  ++   L  SSI  T A +G  + +    L 
Sbjct: 99  MKRSQVLGLITRSSRGLCVAGTHGKTTTSTLIAHLLHESSIGCT-AFLGGISENYNTNLL 157

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L++        + E       E     H + P I+VIT+  P HL  +   E    +   
Sbjct: 158 LSKKSPYT---VIEA-----DEFDRSFHALHPFISVITSTDPDHLDIYGTQEAYFESFEH 209

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               ++  G + +       + LK           Y++   +  DF        + + +M
Sbjct: 210 YTSLIDSDGILVI------RKGLKIHPRLKEGVKTYTYSAHEG-DFHAENIIIENGEIFM 262

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +       +  +          +N +  L +  +  A      KA+  F   E   +R+ 
Sbjct: 263 DFVGPNVRINNIQLGVPISINIENSVAALAVAHLCAAKDQELKKAMGTFKGVE---RRFD 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L      LI++ Y  +PA +K +I  + ++ P  + +   V      +   ++ F+ D
Sbjct: 320 FVLKNDKHVLIND-YAHHPAEIKQSIISIKELYP--KRKLTTVF--QPHLYTRTKDFYKD 374

Query: 392 LAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            AE         +L +Y      + G   + +   L  S+ + ++ T + +   + +   
Sbjct: 375 FAESLSLSDEVILLDIYPAREEPIEGVTSMLIYSNLRNSV-IKHTATKENIVNLLSTL-- 431

Query: 443 DGDVVVVKSSNSCG 456
             D+V+   +    
Sbjct: 432 STDIVLTLGAGDIN 445


>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
          Length = 443

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 115/351 (32%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  ++              G+  N + + +         
Sbjct: 95  FAGRYTNSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGNSLALQV----AEDPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I +   K
Sbjct: 151 EYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQNQTK 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     DD   +    K     +   +S  K K +   + + +   EQ          
Sbjct: 207 EDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKEKGSIGYIEEGQYTIEQPE-----PFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L       I     +   K+LS F   E    R          
Sbjct: 262 MEQEDLSLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGVE---HRLEKVCKVAGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  +   A+  +           I ++G     G+   + +  + +++   
Sbjct: 319 QYINDSKATNVDACWYALESMRT-------PTILIIG-----GKDKGNDYNSIKDLVKQK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     L D      + +  + +M             GD V++
Sbjct: 367 CAGIVYL-GADNKKLHDNFDDLGLPIRDTHSMKDCVAACAELAKPGDTVLL 416


>gi|229031544|ref|ZP_04187544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
 gi|228729833|gb|EEL80813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 129/350 (36%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K ++S  K       +++   C +   + V++     
Sbjct: 219 YSVINADDADVMALSAYSK--GQKVLFSTTKEIEDGACIKENALCFKGEKV-VEVGD--- 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+    +
Sbjct: 273 ---IVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRK---V 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A++  +Q         I +L    + G                 N+
Sbjct: 327 YNDSKATNMLATEKALAAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 438

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 135/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--IAQQTETMEEAMRLLAPRVQPGDMVLL 410


>gi|326202129|ref|ZP_08191999.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987924|gb|EGD48750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 465

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 124/352 (35%), Gaps = 39/352 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A + A+TGS GKTTT  ++   LS         G+    +   +       + D  + E
Sbjct: 116 PAQVFAVTGSDGKTTTTTLIYKILSEEGYNCWLGGNIGIPLLSKIDE---VAETDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  IR       P +AV+T ++P HL     ++E   AK  IF   ++   + LN
Sbjct: 173 LSSFQLMTIRD-----CPSVAVVTNLSPNHLDVHKSLQEYIDAKKNIFIYQKENEKLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           YD+   +    ++    +         +             + +   V ++G  ++    
Sbjct: 228 YDNEITKSFNYEARGEHVY-FSRLSNLEEGVVYQDGVIMVKKGNESTVIVEGDKIK---- 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N +      +I     +T  K  + F+  E    R             + S 
Sbjct: 283 IPGVHNIENYMAATA-ATIDYVKPETIAKIATTFNGVE---HRIELVRELNGIKFYNSSI 338

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +++P+   AA+            + I + G     G+     +  + E+++   +  + L
Sbjct: 339 DSSPSRTIAALKTFKN-------KVILIAG-----GKDKGIPYDSIGEIIAE-KVKCLLL 385

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +++A             I + + ++ + +          GD +++
Sbjct: 386 IGATASRIEEAYKNYLQQRDIDNEIEIIHCDSYEEVVKEAYGQAKSGDCIIL 437


>gi|303327350|ref|ZP_07357791.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862290|gb|EFL85223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
          Length = 434

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 117/387 (30%), Gaps = 58/387 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VV +  M  +     +           L ++ +A R      ++A+TG+ GKTTT  
Sbjct: 76  AAFVVPSPGMPVAKLVRYLGDVTRPGAPEVLAEMELAWRYLDDEPVLAVTGTSGKTTTAS 135

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +   T    G+    +   +   R     D  + E+    L           P
Sbjct: 136 LAAAMLQAQGYTVFLGGNIGTPLSEYVLSGR---KADVLVLEISSFQLQACSTFC----P 188

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHAL 242
              V+  I P HL     + E   AK  +F   ++     L  D  D       A+   L
Sbjct: 189 RAGVLLNITPNHLDYHKDMAEYTEAKFRLFRCQDEGDLAVLGADLHDP------AQGFNL 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + ++          +                             G H   N       
Sbjct: 243 RARRVW---------VRAS------------------ERFPQSGLPGAHNKFNEEAAWQA 275

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                     A +A++ F P      R      +     +++S     +S+K A+     
Sbjct: 276 CRFFGVSEANAARAVARFKPLP---HRLELVRERCGVLYVNDSKCTTVSSLKVALQAF-- 330

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +     + G   + G+L+      L  ++    +  V L G      + A     
Sbjct: 331 -----DRPLRLLCGGKFKGGDLAA-----LGGLIRER-VREVALFGASREHFETAWQGLA 379

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + +   ++     + +S  +GDVV++
Sbjct: 380 PISWHPVLEEAVRALSASAQEGDVVLL 406


>gi|114566361|ref|YP_753515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337296|gb|ABI68144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 453

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 39/345 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI+G+ GKTTT  +L   L+   +     G+    IG+PLT     +     + EL   
Sbjct: 113 LAISGTNGKTTTTSLLHYILAQAGRNALAGGN----IGIPLTTLLDSISAGTIVVELSSF 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      +   RP+I  +  I P HL+    +E    AKA+IF   +       NY+DS
Sbjct: 169 QL----ESSSSFRPYICGLLNITPDHLNRHKTMERYIEAKAKIFAQQKPGDYAVFNYEDS 224

Query: 231 FFELLKAKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
               +     A      + F       + A                E+    +       
Sbjct: 225 ILREMARSCPA----QTFFFSSERELMEGAFINNGVITIKRAGIIQEIARIDE-----VS 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L    + S+     +   +AL+ F    G   R            +++S 
Sbjct: 276 LRGKHNLENILAATMMASLAGVSPEDIRQALASF---PGVRHRMEELGLYDDVLYVNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP ++  A+   +Q         I + G   +    S      LA ++    +  + L
Sbjct: 333 ATNPEAVMKALDSFNQ-------PIILIAGGRNKGSSFS-----QLAGLIKQ-KVRELVL 379

Query: 407 SGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +KDA+      ++H  E +    +        G+VV++
Sbjct: 380 LGEAREEIKDAVIDAGFRNIHEVEDLQAAVIKAHELARKGEVVLL 424


>gi|47565784|ref|ZP_00236823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228987057|ref|ZP_04147182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47557064|gb|EAL15393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228772651|gb|EEM21092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 125/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K ++S  K       ++      +   +         
Sbjct: 219 YSVINADDADVMALSAYSK--GQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVGD---- 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 273 ---IVLPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q         I +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
 gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
          Length = 761

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 145/399 (36%), Gaps = 34/399 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   + +     V   G+  D+  +A  + F  + G   DG   +  A +
Sbjct: 229 MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADK 285

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +GA  VV + D+          +  VDD+L AL  L      R  +   +I +TG+ G T
Sbjct: 286 RGAVAVVADQDLNIEGTLACRALVIVDDILAALRVLPACLYRRPSTDMAVIGVTGTDGVT 345

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-----------------IGVPLTLARMPVDVDFG 163
           TT  ++     ++      +G    +                 I     +A M  +    
Sbjct: 346 TTTHLVKAMYEAMGVRTGLVGVLGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNGTEA 405

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
           +     +       +   +   IAV+T +      +    E+  S+ A +F  +      
Sbjct: 406 VVLETATDGIPPSGVGSEIDYDIAVLTNVRHTDGEDGMTYEQYMSSMASLFSRMVDPDRH 465

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD       A+         YSF ++K AD    K++    ++ + VQ     +
Sbjct: 466 RKVVNIDDPCAPFFAAQGGHDVPVVTYSF-ENKKADVHTLKYQLSLFETEVLVQTPHGIL 524

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+    +G     N+L T+ +   + A ++  ++ +       G   R      +  F +
Sbjct: 525 EISSGLLGRENIYNILATVAVGIAVGAPLEDIVRGIEEVDAIPG---RCELIDEEQAFGV 581

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           I + +   P ++   +  + ++ P    R + V+G   E
Sbjct: 582 IVD-HARTPEALSRLLDGVRELGP---RRIVTVVGCCGE 616


>gi|55820336|ref|YP_138778.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           LMG 18311]
 gi|55822227|ref|YP_140668.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           CNRZ1066]
 gi|81559867|sp|Q5M1J9|MURC_STRT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81561043|sp|Q5M641|MURC_STRT2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|55736321|gb|AAV59963.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus thermophilus
           LMG 18311]
 gi|55738212|gb|AAV61853.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus thermophilus
           CNRZ1066]
          Length = 447

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 132/374 (35%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T   + G+ GKT+T  +L+ ++ +I  T   IG             R  
Sbjct: 98  HEFLGHFMNQFTSFGVAGAHGKTSTTGLLSHSMKNITDTSYLIGDG---------TGRGS 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ I+++ SA  +  + +
Sbjct: 149 ANAQYFVFEA-----DEYERHFMPYHPAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 203

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +DS    + + +       IY +G  +N DF      + +  S  +V+  
Sbjct: 204 QKG--LFVYGEDSNLRKITSNA------PIYYYGFEENDDFMATDIIRTTTGSNFKVKHD 255

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ + E      G H   N    +  + +   D+    + L  F   + R      +   
Sbjct: 256 GQIIGEFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKIISD-- 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D  E    + 
Sbjct: 314 ---TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEAD 370

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  LA++  S   + H       V  L   + +   V   E +  L         D  
Sbjct: 371 AVY--LAQIYGSAREVDH---GDVKVEDLAAKINKPAKVVTVENVSPLLDH------DNA 419

Query: 446 VVVVKSSNSCGFYR 459
           + V   +     Y 
Sbjct: 420 IYVFMGAGDIQLYE 433


>gi|254423500|ref|ZP_05037218.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
 gi|196190989|gb|EDX85953.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
          Length = 505

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 145/387 (37%), Gaps = 50/387 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYA 138
           +L  P+F   D+L AL          ++   IAI G+ GKTTT  +    L         
Sbjct: 124 ALGCPIFHRSDILAAL---------MNEKKGIAIAGTHGKTTTSSITGYLLLKAGVDPTI 174

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            IG   +       + +     D+ + E   S    ++  +      I VIT I   H  
Sbjct: 175 IIGGEVSAWCGNAYVGQ----SDYVVAEADESDGSLVKLSS-----QIGVITNIELDHPD 225

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-- 256
           +++ ++++ +   +    + K  T+  + D               I+   S+     A  
Sbjct: 226 HYTSLDQVVAIFDQF---VTKCKTVVGSIDCPTVRD--------RIQPTISYSVEAEAKA 274

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           D++     + ++    ++  +GK +  +    +G H   N L  + +  +L    ++   
Sbjct: 275 DYKAINIVETADGMTADILERGKLLGNLTIPLLGLHNLSNTLAAIAVARLLHVSFESIQT 334

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL----SQISPHGEGRR 371
            L  F   +G  +R+           +D+ Y  +P+ +KA ++      SQ  P G GRR
Sbjct: 335 HLPNF---KGARRRFEHRGFHNEILFVDD-YAHHPSEIKATLAAAQVQRSQQLPSGRGRR 390

Query: 372 IAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
           I  +            + E S  F   D   V  +Y+     L+G     L D + + + 
Sbjct: 391 IVAVFQPHRYSRATTLLSEFSTCFEGADRLLVTDIYSAGEANLTGITGEKLADVIAQHLP 450

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              Y  T++     + +SL  GD+V+ 
Sbjct: 451 STEYCGTLENTKRVLMTSLSSGDIVIF 477


>gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei BL23]
 gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus casei BL23]
 gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei LC2W]
 gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei BD-II]
          Length = 517

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 159/488 (32%), Gaps = 75/488 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P +  R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPESDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSM- 281
           +  A +     ++IY F    +A F+ ++            +    +S   +    +   
Sbjct: 253 VYAAATTTTYPESIYLF---ASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAA 309

Query: 282 ------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       IG     N    +    +   D   A+  ++     +  G+     + 
Sbjct: 310 ALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAK---VKIPGRMEHTKVA 366

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +D  Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 367 GHGAVYVD--YAHNYASMKALLSFLKH--AYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDV 446
           L+ +       +          + + +   I      VH             S     D+
Sbjct: 420 LTEFATEAFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDI 479

Query: 447 VVV--KSS 452
           VVV  K +
Sbjct: 480 VVVAGKGA 487


>gi|148359297|ref|YP_001250504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
 gi|148281070|gb|ABQ55158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
          Length = 441

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IA+ G+ GKTTT  M+   L          IG  ++       L +      + +
Sbjct: 89  SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKG----RWFV 144

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP+IAV+  +   H   +  +  I      +   + K+G 
Sbjct: 145 IEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV 204

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
                DD     + ++        I +   S +A++           S  ++   G    
Sbjct: 205 AIKPRDDKALNEVLSRGQ---FSRIETLALSGDAEWVAELIDDS--GSQFKILHNGVMVA 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG    +N L  +        +   A KAL  F P +   +R     N+   T+
Sbjct: 260 EVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVK---RRLEVRSNRHGVTV 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   I  L +   H   R  AV+    E    +    +   E+  +L  
Sbjct: 317 YDD-FAHHPTAITKTIDALKRSGRHQ--RIFAVM----EFASYTMRTGVHAGEMAHALAP 369

Query: 401 ISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   ++       LKD +   I      +    +   I  ++ +GD V+V S+    
Sbjct: 370 VDGAYVLEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTVREGDAVLVMSNRGFN 426


>gi|262066316|ref|ZP_06025928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380011|gb|EFE87529.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 432

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 133/353 (37%), Gaps = 43/353 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  IIAITG+ GK+TT   ++  L+         G+    +     +     D+DF 
Sbjct: 87  KNLKTKIIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIGRSLSE---VLLHEKDLDFV 143

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  +       +P+I++I  + P H+  +   +E    K  I +  ++    
Sbjct: 144 SLELSSFQLENVENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNISKNQDENQYF 199

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSME 282
             N DD     ++ ++  +  K I S  KSK A+  +   K    +   ++V        
Sbjct: 200 IENIDD---VEIEKRAKQIKAKRI-SVSKSKEANIYVANDKIYVGKDCIIDVD------- 248

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L  +    IL  D +   + L +  P E    R     N G    I
Sbjct: 249 -KLSLKGIHNVENTLFMVATSEILNIDREKLKEFLMIATPLE---HRTELFFNYGKVKFI 304

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S K AI              I + G   +  +L+      LAE++   NI 
Sbjct: 305 NDSKATNVDSTKFAIQA--------NKDSILICGGYDKGVDLAP-----LAEMIKE-NIK 350

Query: 403 HVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVD--GDVVVV 449
            V+L G     ++  L +    +  +H  E ++   L ++        +V+++
Sbjct: 351 EVYLIGVIADKIETELKKIGYEAGKIHKLENIENSLLDMKKRFTKDSDEVILL 403


>gi|159897146|ref|YP_001543393.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890185|gb|ABX03265.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 894

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 151/454 (33%), Gaps = 63/454 (13%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLV---VVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVA 101
           I G    G DFI+  + +    V   +V  +          P  G   D  G +  +   
Sbjct: 425 IVGLDVAGIDFIIPDISRPVSEVGGGIVEVNAAPGFRMHVAPSEGTPRDAAGPVIDMLFP 484

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-------- 153
           A   S+  + A+TG+ GKTTT  M    L           +   +I     L        
Sbjct: 485 AGTPSRIPLAALTGTNGKTTTARMTAHILKMAGYHVGMTSTDGIYIDGERVLRGDMTGPK 544

Query: 154 -ARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIA 207
            ARM      VD  + E   +  G +R         +  I  I+  HL       +EE+A
Sbjct: 545 SARMVLRDPTVDAAVLE--TARGGILREGLGYDEVDVGAILNISADHLGLRGIDTLEEMA 602

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--------- 258
             K+ I E +++ G   LN DD     L A++ A      + F                 
Sbjct: 603 KVKSLIIEVIKRDGWAVLNADDPLVAKLVARTRAKP----FYFSFDPANPLVREQVQVGG 658

Query: 259 QLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGY-------HMAQNMLMTLGIVSILTADV 310
           +    ++      + +  +G+ +  +  H I             N L    +   L   +
Sbjct: 659 RAIVVEKGVNGDMVTLYDKGRHIPLLWTHLIPATLEGRAKFNVANALAAAALAYSLGISI 718

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG- 369
           +   + L  F     +        ++  F +I + Y  NPA++   I V+ Q+   G+  
Sbjct: 719 ENIRQGLRTFTTSFYQTPGRLNVFDEHPFRVILD-YGHNPAAVSNLIDVVRQLPREGKAI 777

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALP 419
             I+V GD  E+         ++  +L       + +           G     +++ L 
Sbjct: 778 CVISVPGDRREVDA------REIGRLLGAGVFDQIIIKEDTSLRGRKEGEMPGYIREGLA 831

Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +     ++HY+                GD+V+V
Sbjct: 832 EAGFAESNIHYTRHEREAIAMALDGAQRGDLVMV 865


>gi|256027427|ref|ZP_05441261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D11]
 gi|289765390|ref|ZP_06524768.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
 gi|289716945|gb|EFD80957.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
          Length = 432

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 134/354 (37%), Gaps = 49/354 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF   
Sbjct: 89  IKTKIIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIGRSLSE---VLLKEKDLDFISL 145

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +      
Sbjct: 146 ELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVV 284
           N DD     ++ ++  +  K I S  K K AD  +   K    + S ++V          
Sbjct: 202 NIDDV---EIEKRAKQVKAKRI-SVSKFKKADIFVENDKIYHGKDSIIDVD--------K 249

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L  +    IL  D +   + L +  P E    R       G    I++
Sbjct: 250 LSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLE---HRTELFFTYGKLKFIND 306

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K AI              I + G   +  +L+      LAE++   NI  V
Sbjct: 307 SKATNVDSTKFAIEA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEV 352

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
           +L G     ++  L +   V Y ++     + +++SL D          +V+++
Sbjct: 353 YLIGVIADKIESELKK---VGYEDSKIHKLVNLENSLQDMKKRFTKNSDEVILL 403


>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
 gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 130/353 (36%), Gaps = 41/353 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   KK     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLAFEMLKEGKKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     + +P IA    +  AHL      EE   AKA IF+   +T 
Sbjct: 163 VVVTELSSFQLMGVE----MFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A+S    +     F  +K     +       E +   +  +G+ +
Sbjct: 219 YSVINADDADVMTLSAQSKGQKVL----FSTTKE----IEDGAYIKENA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 AEVSDIVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS---SLVDGDVVVV 449
           ++  +   G     L  A  ++  +   E++D L   +        DGDV+++
Sbjct: 371 HVKAIVTFGQTAPKLVRAAEKAG-LDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
 gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 45/349 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + ITGS GKTTT  +    L   +K     G+      V   +A++  + +  + EL
Sbjct: 112 APFVGITGSNGKTTTTMLTFEMLKEGQKYPVIAGNIGT---VACEVAQLAKENEVVVTEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +       +P IA    +  AHL      +E   AKA IF+   +T    +N 
Sbjct: 169 SSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETDYSIINA 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEVV 284
           DD+    L A            + K K   F   K     + ++++   +  +G+ +  V
Sbjct: 225 DDADVMALSA------------YSKGKKVLFSATKI--IEDGAYIKDNALYFKGEKVVKV 270

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFY--- 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q         I +L    + G                 ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KHVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|331266039|ref|YP_004325669.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus oralis Uo5]
 gi|326682711|emb|CBZ00328.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus oralis Uo5]
          Length = 444

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G +++  DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|322375569|ref|ZP_08050081.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C300]
 gi|321279277|gb|EFX56318.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C300]
          Length = 444

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + A +       IY +G +++  DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITANA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|229075669|ref|ZP_04208651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
 gi|229098383|ref|ZP_04229328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|229104475|ref|ZP_04235142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228678917|gb|EEL33127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228685000|gb|EEL38933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|228707445|gb|EEL59636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGRKHPIIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IAV   +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----SFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K ++S  K       ++            +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSK--GQKILFSTAKENEDGACIKDNA---------LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  +     +   +T+D   +   +   +GDV+++
Sbjct: 371 NVKALVTFGQTAPKLVRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|229174579|ref|ZP_04302109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
 gi|228608884|gb|EEK66176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 129/350 (36%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLAFEMLKEGQKHPIIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K ++S  K       +++   C +   + V++     
Sbjct: 219 YSVINADDADVMALSAYSK--GQKVLFSTTKEIEDGACIKENALCFKGEKV-VEVGD--- 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+    +
Sbjct: 273 ---IVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRK---V 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q         I +L    + G                 N+
Sbjct: 327 YNDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLVPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|322377008|ref|ZP_08051501.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M334]
 gi|321282815|gb|EFX59822.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M334]
          Length = 444

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKIMSDA------PIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|305664533|ref|YP_003860820.1| UDP-N-acetylmuramate--L-alanine ligase [Maribacter sp. HTCC2170]
 gi|88708550|gb|EAR00786.1| UDP-N-acetylmuramate--L-alanine ligase [Maribacter sp. HTCC2170]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 129/368 (35%), Gaps = 46/368 (12%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKTTT  +L   L+     +       +       L R     D+ + E     
Sbjct: 116 AVAGTHGKTTTSSILAHLLNETGTPFTAFLGGISEDFNSNFLFR---GSDYSVVEADEFD 172

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +R     + P +A IT++   HL  +   EE+  +  +    +   G +F+      
Sbjct: 173 RSFLR-----LYPDVACITSMDADHLDIYGNSEELTKSFNDFVGKINPDGKLFV------ 221

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGY 290
                            ++G   ++D+ +R  K        +++    ++  V  +  G 
Sbjct: 222 --------RNGLPLDGITYGIEDDSDYCIRNLKIEHGAYIFDLKTPKTTLSGVKFNKPGK 273

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L+   +     +      +AL  F   +G  +R+   + +  F  ID+ Y  +P
Sbjct: 274 HNLLNGLVAFAMAIEAGSPPYRLAEALGTF---KGVQRRFSYKIKEDDFVFIDD-YAHHP 329

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNI 401
             + A    ++++ P      +AV      +   ++ F  D AE         +L +Y  
Sbjct: 330 TEINAVYDAIAEMHPDKN--VLAVF--QPHLFSRTRDFGDDFAESLSKFDSILLLEIYPA 385

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               + G     L   +         ++   L   I++     DV+V   +   G    +
Sbjct: 386 REQPIEGITSKWLMKKIDNDNKKLIGKS--NLIQEIKA--QSPDVLVTMGAGDIGLE--V 439

Query: 462 NLLLEEFP 469
           + + +EF 
Sbjct: 440 SRIRKEFE 447


>gi|332523014|ref|ZP_08399266.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314278|gb|EGJ27263.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 444

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L   L +I  T   IG             R   +  + +FE     
Sbjct: 108 GVAGAHGKTSTTGLLAHVLKNITNTSYLIGDG---------TGRGSANAQYFVFE----- 153

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GIE++ SA  +  + ++K   +F+  +D  
Sbjct: 154 SDEYERHFMPYYPEYSIITNIDFDHPDYFTGIEDVFSAFNDYAKHVQK--ALFVYGEDEE 211

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + + + +       IY +G  +  DF      + +  S  +V+   + +   H    G 
Sbjct: 212 LKKITSSA------PIYYYGFEEKNDFIAFDIIRTTNGSDFKVKHDNQVIGQFHVPAYGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + I   D+D   K +  F   +   +R+   +     T+I + +  +P
Sbjct: 266 HNILNATAVIANLYIAGVDMDLVAKHMVTFSGVK---RRFTEKVIND--TIIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D  +    + S +     +  +Y 
Sbjct: 321 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNEADSVY-----LAQIYG 375

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 376 SAREIDKGEVKVEDLAARIVKPAEVVTVENVSPLLNH------DNAVYVFMGAGDIQLYE 429


>gi|264680248|ref|YP_003280158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
 gi|262210764|gb|ACY34862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
          Length = 634

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 151/460 (32%), Gaps = 72/460 (15%)

Query: 33  DSRSIAPQEAFFA-----IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           D+R   P   +       + G  +    F   A+  G  L  V      S  S+  PVF 
Sbjct: 165 DTREAPP---YLPALQAELPGVRFVAGAFTA-ALVDGQSLSSVYRSPGLSPASV-APVFN 219

Query: 88  VDDVLG------------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
               +G            AL  L  A        ++ ITG+ GKTT   +    L     
Sbjct: 220 AARSIGLPTGGELDLFAFALKGLREAHG--YAPKVLGITGTNGKTTVTSLTGQLLEHGGL 277

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           +    G+    +   L+ AR+  +      + EL    L + R       P  A +  I 
Sbjct: 278 SVGVAGNIGPSLLDTLS-ARIDAETLPQAWVLELSSFQLDDCR----GFEPTAATVLNIT 332

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL    G++  A AKA +F    +   + LN +D     +     A+  K   +F ++
Sbjct: 333 QDHLDWHGGMQAYADAKAHVF---GEQALMVLNREDPVVMAMLPAPVAVPSKRGKTFQRA 389

Query: 254 ----------KNADFQLRKWKQCS---EQSWMEVQLQGKSMEVVH----------HGIGY 290
                     +  DF L      +        +   +GK+ + +H             G 
Sbjct: 390 HVSFGGDMPRRPGDFGLEVVNGMTWLVRAHEADETSKGKNADDLHIVRLMPADALRIRGR 449

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N L  L + +     +   +          G   R +     G     D+S   N 
Sbjct: 450 HNAINALSALALATGAGCTLAPLLYG---LREYRGEPHRVQPVGRVGDVEYFDDSKGTNV 506

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  AA+     +    + R + +LG + +  + +      LA  +S Y +    L G  
Sbjct: 507 GATVAAL-----MGLGPDHRIVVILGGLGKGQDFTP-----LAAPVSRY-VRAAVLIGQD 555

Query: 411 VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +++AL    + +  + +M              D V++
Sbjct: 556 APLIREALGDTGVTLVDAASMQDAVQQAARLAHANDAVLL 595


>gi|193213699|ref|YP_001999652.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
 gi|226711893|sp|B3QLW6|MURD_CHLP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193087176|gb|ACF12452.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
          Length = 467

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 132/353 (37%), Gaps = 32/353 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGI 164
           +A II ITG+ GKTTT  ++     +  +          +IG P +  ++ M  D D  +
Sbjct: 107 RARIIGITGTDGKTTTATLIHRICEADGEQQGYRAFSVGNIGTPFSSEVSGMEPD-DIAV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L          RP+IAV+T I P H+  +   I   A AK  I    +   T+
Sbjct: 166 LELSSYQLEG----CSSFRPNIAVLTNITPDHMDRYGGDIHAYARAKFRIHASQQAGDTL 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-- 281
             N+DD               K + +  K+++ +     +   ++  W+ ++  G +   
Sbjct: 222 IYNHDDPLLRAHFEGDGPWPFKVVRTGLKAESFEGVSEDFVSVADG-WIVIRTAGLTEQF 280

Query: 282 ----EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               EV+  G  G H   N+L ++          D   ++LS F   E    R     + 
Sbjct: 281 MPVDEVMKPGFRGEHNLYNVLSSVAAARAAGVRDDAVRRSLSEFGGVE---HRQEFVGSF 337

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  +M+ A+  +           + + G     G    + +  +AE++
Sbjct: 338 CGVDWINDSKATNVNAMRQALQTVPAG-------MVLIAG-----GRDKGNDYASIAELV 385

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +S +   G     + +A    + V  + ++       + S   G  V+ 
Sbjct: 386 KE-KVSCIVAIGESRGKIAEAFRGVVPVFEAASLHEAVELARQSARPGGSVLF 437


>gi|225019925|ref|ZP_03709117.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
 gi|224947289|gb|EEG28498.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
          Length = 463

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 113/348 (32%), Gaps = 40/348 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I A+TGS GKTTT  +++  L +        G+    +   +         D  + EL 
Sbjct: 118 KIYAVTGSDGKTTTTTLISEMLKAQDYNVHLGGNIGKALLPGI---EEIGPDDVAVVELS 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     L+    P +AVIT IAP HL     +EE    K  +           LN D
Sbjct: 175 SFQL-----LSMRQSPDVAVITNIAPNHLDVHGTMEEYIQCKCHLLWHQNAFSKAVLNAD 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +   + L         K            AD     +   + +  +         +    
Sbjct: 230 NEITDGLSGYVRGRLCKFSRRAAPHTGAWADENGDIFLMDNGKQTLLFN------QNQIR 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L  +  VS +  +    +K    F    G   R             ++S 
Sbjct: 284 LPGTHNVENYLAAIAAVSGV-VEPANILKVAREFG---GVQHRIEFVRELDGVKWYNDSI 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P    A ++   Q       + I + G     G   +  +  LA VL   +   + L
Sbjct: 340 ATSPTRTIAGLNAFEQ-------KLIIIAG-----GYDKKLSYEPLAPVLVSKS-KALIL 386

Query: 407 SGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            G     ++ A+       P  + +++  +M+      +     GD++
Sbjct: 387 MGTTAPKIQQAVVDCSGYDPELLPIYHVASMEEAVTLARKIASAGDII 434


>gi|307127726|ref|YP_003879757.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
 gi|306484788|gb|ADM91657.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
          Length = 444

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 135/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E+I +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDIFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G   +  DF      +    S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEVEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|229157491|ref|ZP_04285568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
 gi|228625941|gb|EEK82691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 125/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQGAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S   G K ++S  K       ++      +   +         
Sbjct: 219 YSVINADDADVMALSAYSK--GQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVGD---- 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 273 ---IVLPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q         I +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
 gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
          Length = 449

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 119/352 (33%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  I ITGS GKTTT  ++   L   +K     G+      V   +A+     +
Sbjct: 105 AYEISEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAGNIGT---VACEVAQKATKDN 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I       RP I+++  +  AHL      EE   AKA +F       
Sbjct: 162 VIVTELSSFQLMGIEKF----RPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSED 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGK 279
              +N DD       A   A  +    +   ++ A  +        E+  S  +V L GK
Sbjct: 218 FAVINADDELVMKASADVKATKVPFSVTAQTTEGAYIKNETIFFKDEEVMSLKDVVLPGK 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                      H  +N+L  + +V +     +   + L+ F   +    R +        
Sbjct: 278 -----------HNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVK---HRVQYVTTINKR 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + K A+S  SQ +         +L    + G        +        
Sbjct: 324 KFYNDSKATNMLATKVALSAFSQPT--------ILLAGGLDRGNEFDDLKEEF------K 369

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  V   G     ++     +    V   + +        +   + DV+++
Sbjct: 370 NVKAVITFGETAPKIERVAKEAGIQIVKRVDNVKQAVSEAYAYSDEEDVILL 421


>gi|160942737|ref|ZP_02089979.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446011|gb|EDP23014.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
          Length = 461

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 130/364 (35%), Gaps = 42/364 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
              R     I ++G+ GKTTT  M+T AL    +   A IG     I       +     
Sbjct: 110 YVSRLYKQSICVSGTHGKTTTTSMITTALELAGRDPSAVIGGKLPLINGYGKAGKG---- 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E       E       + P+++V+  I   HL  +  + E+  A       L   
Sbjct: 166 DDIVIEA-----CEFAETFLKLTPYLSVVLNIDNDHLDYYGSMGELKFAFKRF--ALMTQ 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-- 278
             IF N DD     +         + + +F    +AD++     +     + E  L+   
Sbjct: 219 FMIFANADDKNTMDVMYTL----DRRVRTFAIDNHADYRAVNVNEYKPG-FFEFDLKEWN 273

Query: 279 --KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +     G H   N L    +   +    +   +A   F   +G G+R+     +
Sbjct: 274 TTDTTRIRLSVPGRHNIYNALAMCAVCRFVGLSAEQCAEAALNF---KGAGRRFEV-YGE 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+ + Y  +P  ++A ++   ++   G  R IAV          ++    D  +VL
Sbjct: 330 CNGALVIDDYAHHPTELRATLNTAKEM---GYKRLIAV--HQPFTYSRTKMLFNDFVDVL 384

Query: 397 SLYNISHV-WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + +I+ +  + G             L   +P S+ V+   ++     +++ +   GD+V
Sbjct: 385 KIPDITVLTPIMGSREPNDPTITSAKLAAQIPGSVLVN---SLQEAADWVKQNAKPGDLV 441

Query: 448 VVKS 451
           +   
Sbjct: 442 ITLG 445


>gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 449

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 124/346 (35%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       ++T    G+      V   +A+     D+ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFDKSRQTGLLSGNIG---YVASKVAQEAKPEDYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT I  AHL     +EE  +AK  I++   +   +  
Sbjct: 166 ELSSFQLLGIE----QYRPHIAIITNIYSAHLDYHGTLEEYRNAKRRIYKNQTEDDFLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    ++  L  K +Y F  S+  D   ++          +         +  
Sbjct: 222 N----YNQRHLIETDGLKSK-VYYFSTSQEVDGIYVKDGYIMLNGLRL-------IHKDD 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +D  I   +      G   R +   +       ++
Sbjct: 270 IVLPGEHNLENILAAVLAAVLGGVSIDAVI---ATLTSFSGIKHRLQYIGSNKTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++  +Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNGFDEL------IPYMKNVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     L      +  +V  +  +      +Q+ +   DVV++
Sbjct: 373 ITFGETQDKLTKLGESQGKYVIRATDVKDAVDKVQNVIEPNDVVLL 418


>gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 449

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 135/370 (36%), Gaps = 41/370 (11%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           I    V   L  L ++ ++  L S+A IIA+TG+ GKTT   ++       + T    G+
Sbjct: 87  IIYEAVKRGLKILTEVELSY-LISEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGN 145

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                 V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     
Sbjct: 146 IG---YVASKVAQEVKPTDYLVTELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHEN 198

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLR 261
           +E   +AK +I++   +   +  N    + +    +S  L  KT+Y F   +  D   ++
Sbjct: 199 LENYQNAKKQIYKNQTEEDYLICN----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIK 253

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                 +   + +  +           G H  +N+L  +    +    +   I +L+ F 
Sbjct: 254 DGFIVYKGVRI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS 306

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              G   R +           ++S   N  + + A++  +Q         I  L    + 
Sbjct: 307 ---GIEHRLQYVGTNRTNKYYNDSKATNTLATQFALNSFNQ--------PIIWLCGGLDR 355

Query: 382 GELSQSF--HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           G        +++    + ++  +            K    +   V  +  ++     +Q 
Sbjct: 356 GNEFDELIPYMENVRAMVVFGQTK-------AKFAKLGNSQGKSVIEANNVEDAVDKVQD 408

Query: 440 SLVDGDVVVV 449
            +   DVV++
Sbjct: 409 IIEPNDVVLL 418


>gi|282878013|ref|ZP_06286821.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
 gi|281299848|gb|EFA92209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
          Length = 443

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 120/357 (33%), Gaps = 32/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      I  ITGS GKTTT  ++     S        G+    + + +   
Sbjct: 90  ISEIEFAGRYTHSKMIC-ITGSNGKTTTTSLIYHIFKSAGYDAGLAGNIGRSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
                 ++ I EL    L  +    +  +  IA++  I P HL  +   ++    AK  I
Sbjct: 146 -AEDPHEYYIIELSSFQLDNM----YKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +      +     DD   +    K +   ++  +S  K K +   + + +   E+    
Sbjct: 201 IQNQTAQDSFIYWNDDPIIKRELKKYNIKAVQCPFSELKEKGSIGYIEEGEYTIEK---- 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L       I     +   K+LS F   E    R    
Sbjct: 257 -PTPFNMEQEALALTGKHNIYNSLAAGIATDIAGIRNEVIRKSLSDFPGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +   A+  +           I +LG     G+   + +  + 
Sbjct: 313 CKVGGVQYINDSKATNVDACWYALESMRT-------PTILILG-----GKDKGNDYGPIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +++    ++ ++L G     L D      I V  + +M             GD V++
Sbjct: 361 DLVKEKCVALMYL-GADNSKLHDNFDNLGIPVRDTHSMKECVAACYELAKPGDTVLL 416


>gi|195978758|ref|YP_002124002.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229620432|sp|B4U4S2|MURC_STREM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195975463|gb|ACG62989.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 443

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 124/374 (33%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L+  L  +  T   IG    H           
Sbjct: 93  HEFLGEFMKQFTSLGVAGAHGKTSTTGLLSHVLKHMTATSYLIGDGTGHG---------A 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  + +FE       E         P  ++IT I   H   F+G++++ +A  +  + +
Sbjct: 144 ADARYFVFE-----SDEYERHFMPYHPEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + + +       IY +G     DF      + +  S  +V+ +
Sbjct: 199 KK--ALFVYGEDEELRKISSPA------PIYYYGFEDTNDFVAFDITRTTNGSDFKVKHK 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G ++   H    G H   N    +  + I   D+    + L  F   + R          
Sbjct: 251 GHAIGQFHVPAYGRHNILNATAVIANLFIAGFDMKLVAEHLKSFSGVKRRFTEKVI---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D       + 
Sbjct: 307 -NDTIIIDDFAHHPTEIIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFAHALNEAD 365

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y     V      V  L   + R   V   + +  L         D  
Sbjct: 366 SVY-----LAPIYGSAREVDKGDVKVEDLAARVERPAKVISVDNVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|296327766|ref|ZP_06870305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155113|gb|EFG95891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 428

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 131/352 (37%), Gaps = 47/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+         G+    +     +     D+DF   E
Sbjct: 86  KTKIIAITGTNGKSTTTAKISDMLNHAGYKATYAGNIGRSLSE---VLLKEKDLDFISLE 142

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P I++I  I P H+  +   +E  + K  I +   +      N
Sbjct: 143 LSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNIKFNITKNQTEDLYFIEN 198

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E ++ ++  +  K I S  K K AD  +   K   ++                 
Sbjct: 199 IDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVENDKIYHDKDD-------IIDVDKLS 247

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L  +    IL  D +     L +  P E    R     N G    I++S 
Sbjct: 248 LKGIHNLENTLFMVATAEILKLDREKLKGFLMIATPLE---HRTELFFNYGKLKFINDSK 304

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S K AI              I + G   +  +L+      LAE++   NI  V+L
Sbjct: 305 ATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEVYL 350

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
            G     +++ L +   V Y +      + I++SL D          +V+++
Sbjct: 351 IGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMKKRFTKDSDEVILL 399


>gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 549

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 117/371 (31%), Gaps = 45/371 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI----KKTYACIGSYNNHIGVPLT--LAR 155
              R +  ++ +TGS GKTTT  +L   L                   +IG PL   + R
Sbjct: 173 FLERCRGKVLGVTGSAGKTTTTTLLAEGLRQAAAPGGPLAGRPVFVGGNIGRPLIEEVDR 232

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +P +    + EL    L     L H   P +AV   + P HL     +E  A+AKA I E
Sbjct: 233 IPPEALV-VLELSSFQL----ELCHRA-PDVAVYLNLRPNHLDIHGTMEAYAAAKARIVE 286

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA-----LGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             E  G   LN D+     L  ++                   + A  +    +      
Sbjct: 287 LQEPDGWAVLNADEPAPAGLAGRAPGRVAAFAASARAARELAEREAARRGGPVRAAYLAG 346

Query: 271 WMEVQLQGKSMEVVH-----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              V   G+    +      H  G H   N L  +    +  AD     +A + F   E 
Sbjct: 347 DRLVAWDGQGERPLLEAGAMHLRGAHNRLNALAAILAGWVAGADPAGMAQAAAAFRGVEH 406

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R           ++S    P    AA+   ++         + + G   +     
Sbjct: 407 RLEPVR---ELDGVWYYNDSIATAPDRTLAALEAFTE-------PVVLIAGGYDKGIPFD 456

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQ 438
                 L   L       V L G    A++  +  +         V    +++      +
Sbjct: 457 P-----LGPALCRR-ARAVVLLGRTAEAIQRVIEEAARQEGKAPLVRRVASLEEAVAEAR 510

Query: 439 SSLVDGDVVVV 449
                GDVV++
Sbjct: 511 RLARPGDVVLL 521


>gi|333029403|ref|ZP_08457464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
 gi|332740000|gb|EGJ70482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
          Length = 441

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 46/381 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             ++  +    IPV          +++  A R    A +I ITGS GKTTT  +L     
Sbjct: 77  APIIQQVKDKDIPVI---------SEIEFAGRYS-NAKMICITGSNGKTTTTSLLYHMFH 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              K     G+    +   +       + +F I EL    L  +    +  +  IA++  
Sbjct: 127 KAGKNVGLAGNIGKSLARQV----AEENHEFYIIELSSFQLDNM----YNFKADIAILLN 178

Query: 192 IAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +   +++   AK  I +            DD   +           K  +S 
Sbjct: 179 ITPDHLDRYDNCMDKYIDAKFRIIQNQTDKDHFIYWSDDPILKEQINHRTIHATKNPFSV 238

Query: 251 GKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              +++DF  +   K   +   + +       +      G H   N +  +    +    
Sbjct: 239 ---EHSDFTYKLGNKIILDGGNLSID------KEFVKLSGVHNLYNTMAAITAAYLSKLS 289

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L+ F+  E    R            I++S   N  S   A+  +         
Sbjct: 290 PMEIEQGLNSFNGVE---HRLEYVDTIHGVRFINDSKATNVDSCWYALQAMHN------- 339

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             I +LG     G+   + +  +  ++       V+L G +   L       +I +  + 
Sbjct: 340 STILILG-----GKDKGNDYNKITPLIKEKCTGLVFL-GANNTKLHQFFDGFNIPIEDTN 393

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            M    +  +     GD V++
Sbjct: 394 NMTDAVVKAKGLAKSGDTVLL 414


>gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 535

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/486 (16%), Positives = 157/486 (32%), Gaps = 50/486 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DL   +            V+G+ + S  + P + F A+ G    G  F   AV  GA
Sbjct: 17  SLGDLADTVAVTVDPAARGVLVSGVVLGSADVQPGDLFVAVPGARSHGARFTAAAVAAGA 76

Query: 66  GLVVVNTDM-------------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
             V+ +T+              V     + +P                     +  T   
Sbjct: 77  VAVLTDTEGLALLESTDEGLALVHGTPVVLLPQGSDPQRAAGSAASWFYDHPSAALTSFG 136

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-------------- 158
           +TG+ GKTTT  +L   L+++ +T   +G+     G  +  +R+                
Sbjct: 137 VTGTNGKTTTTYLLDHLLTALGRTVGLVGTVETRSGARVLPSRLTTPDAATLQGVLATMR 196

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +    +  + +S     +     +   +A  T ++  HL     ++   +AKAE+F    
Sbjct: 197 EDGVDVLAMEVSSHSISQRRIDGLHFDVAGFTNLSQDHLDFHGDLDRYFAAKAELFTAER 256

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQ 277
               + +  DD +   L A +    +           +D+ +R     +  S    V   
Sbjct: 257 ARRGVVV-VDDEWGRRLAATADIPTVTLSVEHSGGPQSDWTVRDVHAGASGSTFSVVHRD 315

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH--PKEGRGKRYRCALN 335
           G+S+       G     N  + + +V     +V T   AL           G+  + +  
Sbjct: 316 GRSVRARTALPGSFNVANAALAIVMVVESGIEVGTVTAALEAAGGLSPAVPGRMEQVS-- 373

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-E 394
                 +   +  NP ++  A+   + + P   GR + V G   E     +     +A E
Sbjct: 374 --DSPRVVVDFAHNPDALALAL---AALRPTTAGRLVVVFGATGERDTTKRPVMGRIAVE 428

Query: 395 VLSLYNISHVWLSGFHVLAL-KDALPRSIHVHY-----SETMDGLFLFI---QSSLVDG- 444
              +  ++     G     +  + L  +           + ++     +    + L    
Sbjct: 429 GADVVVVTDDDPHGEAADGIRAEVLAGAREAAAQPGCDVDVLEAAPRALAIRAAVLAADD 488

Query: 445 -DVVVV 449
            D V+V
Sbjct: 489 EDTVLV 494


>gi|159044992|ref|YP_001533786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Dinoroseobacter shibae DFL 12]
 gi|189082879|sp|A8LS92|MURD_DINSH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157912752|gb|ABV94185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dinoroseobacter
           shibae DFL 12]
          Length = 464

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 125/376 (33%), Gaps = 46/376 (12%)

Query: 86  FGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD+ +G   +           S   +IA+TGS GK+TT  ++   L++  +     G+
Sbjct: 95  IPVDNDIGLFFRSFATPDWDEFDSLPRVIAVTGSNGKSTTSALIHHVLTAAGRPTQLAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                     +  +    D G  + EL          L   + P IAV T ++P HL   
Sbjct: 155 IGRG------VLDIDPGEDGGIVVLELSSYQ----TELARALTPDIAVFTNLSPDHLDRH 204

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQ 259
            G+    +AK  +F          +  D+     L ++ S A     +     +K +   
Sbjct: 205 GGMGGYFAAKRRLFTIGGPD-RAVIGTDEPEGLFLASQLSVAPADDRVIRVTSAKPS--- 260

Query: 260 LRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
              W   + + ++    +G+      +  +    G H  QN          L        
Sbjct: 261 GPGWVVSARKGFLAEHRKGRQTGSIDLRPIPGLPGAHNHQNAACAYAACRSLGLAPRQIE 320

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              + F   +G   R +        T +++S   N  S   A+    +I      R IA 
Sbjct: 321 AGFASF---KGLPHRSQIVGTANGVTFVNDSKATNVDSAAKALQAFDRI------RWIA- 370

Query: 375 LGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
            G +  E G  + + H        L  +   +L G         +P + H    ETM   
Sbjct: 371 -GGLEKEGGLAALTPH--------LGGVRKAYLIGRSAAEFALGIPDTPH-EVCETMARA 420

Query: 434 FLFIQSSLVDGDVVVV 449
                +    GD +++
Sbjct: 421 VAAAVAEAEPGDTILL 436


>gi|206971160|ref|ZP_03232111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218232675|ref|YP_002368712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus B4264]
 gi|228954189|ref|ZP_04116217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071412|ref|ZP_04204634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|229081165|ref|ZP_04213675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|229152110|ref|ZP_04280305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|229180188|ref|ZP_04307532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|226711881|sp|B7H6P8|MURD_BACC4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206733932|gb|EDZ51103.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218160632|gb|ACK60624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           B4264]
 gi|228603397|gb|EEK60874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|228631459|gb|EEK88093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|228702209|gb|EEL54685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|228711703|gb|EEL63656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|228805509|gb|EEM52100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 450

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|325496024|gb|EGC93883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ECD227]
          Length = 438

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HIDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|315059091|gb|ADT73420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 8   KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 42

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 43  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 102

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  I+     +     + T I   HL      E    AK   F   
Sbjct: 103 KKCDFFIMEVSSHAL--IQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 157

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 158 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAIVTNK 208

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 209 NQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 265

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 266 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 314

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 315 AKIAI---ITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVV 371

Query: 449 VKS 451
           +  
Sbjct: 372 ILG 374


>gi|296107344|ref|YP_003619044.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649245|gb|ADG25092.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 455

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
           SK  +IA+ G+ GKTTT  M+   L          IG  ++       L +      + +
Sbjct: 103 SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKG----RWFV 158

Query: 165 FELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E     S   + R      RP+IAV+  +   H   +  +  I      +   + K+G 
Sbjct: 159 IEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281
                DD     + ++        I +   S +A++           S  ++   G    
Sbjct: 219 AIKPRDDKALNEVLSRGQ---FSRIETLALSGDAEWVAELIDDS--GSQFKILHNGVMVA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG    +N L  +        +   A KAL  F P +   +R     N+   T+
Sbjct: 274 EVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVK---RRLEVRSNRHGVTV 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   I  L +   H   R  AV+    E    +    +   E+  +L  
Sbjct: 331 YDD-FAHHPTAITKTIDALKRSGRHQ--RIFAVM----EFASYTMRTGVHAGEMAHALAP 383

Query: 401 ISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   ++       LKD +   I      +    +   I  ++ +GD V+V S+    
Sbjct: 384 VDGAYVLEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTVREGDAVLVMSNRGFN 440


>gi|295135633|ref|YP_003586309.1| UDP-N-acetylmuramate--L-alanine ligase [Zunongwangia profunda
           SM-A87]
 gi|294983648|gb|ADF54113.1| UDP-N-acetylmuramate--L-alanine ligase [Zunongwangia profunda
           SM-A87]
          Length = 451

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 130/384 (33%), Gaps = 48/384 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLAR 155
           +  V   + S    +A+ G+ GKTTT  +L   L        A +G  +  I   L L  
Sbjct: 102 RAEVLGLISSNRFTLAVAGTHGKTTTTAILGHLLKETNAPVTAFLGGVSEDIQSNLILKG 161

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                     E+ ++   E       + P+IA I ++   HL  +   E + ++      
Sbjct: 162 D---------EVIVAEADEFDRSFLHLSPNIAAINSMDADHLDIYGVNEHLQASFKAFAA 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L K G +F+                L  KTI   G   +ADF     K        +++
Sbjct: 213 LLPKDGILFV-----------KNGLPLEGKTI---GIEDDADFSAINIKILGGNYHFDLK 258

Query: 276 LQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              + +E    H  G H   N +  L +     +  +    A       +G  +R+   +
Sbjct: 259 TPTEIIEGFTLHLPGRHNVLNAVTALAMALEYGSPAEQLRDA---LQSFKGIRRRFSYKI 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 LID+ Y  +PA +KA    + ++ P  +   + V      +   ++ F  D AE
Sbjct: 316 KTDQKVLIDD-YAHHPAEIKAVFEAVREMYPKMKN--LVVF--QPHLFSRTRDFVDDFAE 370

Query: 395 VLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS          Y      + G     L + +            + L   I +S     
Sbjct: 371 KLSQFDEVMLMDIYPAREKPIEGVDSQWLLEKINNPNKQLVK--REELSAKIITSKAK-- 426

Query: 446 VVVVKSSNSCG--FYRLINLLLEE 467
           VV++  +   G     +   L +E
Sbjct: 427 VVLMLGAGDIGNEVETVKRALEDE 450


>gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus]
          Length = 450

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 125/345 (36%), Gaps = 35/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIVYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++  +Q      G            G    +   +L   +   +   +
Sbjct: 327 SKATNTLATQFALNSFNQPIIWLCG------------GLDRGNEFDELIPYMENVSREWL 374

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +     +  L     +   V  +  ++     +Q  +   DVV++
Sbjct: 375 YSDSRKLSLLNYGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 419


>gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
 gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
          Length = 524

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 151/465 (32%), Gaps = 61/465 (13%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLG 93
            +     F A+ G    G  +   +    A  V+ + +   +      + PV  VDDV  
Sbjct: 38  DVPEGGMFAAVPGTRTHGARYAQQSA---ATAVLTDEEGLKILREAGETRPVLVVDDVRA 94

Query: 94  ALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148
            +  +A           TII +TG+ GKTTT  ML  AL +   +   IG+    I    
Sbjct: 95  VMGHVAAEIYDHPSDSLTIIGVTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRINGRA 154

Query: 149 VPLTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           VP +L               +   V   + E+    L   R     V   +     ++  
Sbjct: 155 VPSSLTTPEAPALQRLFHQMLSEGVTHVVMEVSSHALSLGR--VDGVSFDVGCFLNLSQD 212

Query: 196 HLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--- 250
           HL     +EE   AKA++F+  G        +  DD +   +   +       + +    
Sbjct: 213 HLDFHKTLEEYFQAKAKLFDPAGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQ 272

Query: 251 ----GKSKNADFQLR-----KWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTL 300
                KS  A+              +    +E+      ++EV     G     N  +  
Sbjct: 273 HRVTDKSPAAEVFAEWHAAAATVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAW 332

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  +    D A    S        G+  R    Q F  ++D  Y   PA   A   VL
Sbjct: 333 AVLDAVGHAKDAAK---SGLAQVRVPGRMERIDRGQDFLAVVD--YAHKPA---AVAEVL 384

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +    EGR + V+G     G+   +    +    +      V ++  +  +    +P 
Sbjct: 385 ATLRAQTEGRVLVVVGA---GGDRDSAKRPIMGAEAA-CGADVVIITDDNPRS---EVPS 437

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV--VKSSNSCGFYRLINL 463
            I       + G    + S     D VV  +         R++ L
Sbjct: 438 EIRAAV---VAGAKEAVASGKASSDTVVEEI-GDRGQAIRRVVEL 478


>gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 427

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 126/423 (29%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFHTQALEKGA------------------KIIDVNECKKLL-------KIDEKIKIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      TL   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDESIDEKTLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  I+     ++    + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--IQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    +   +++G    A +Q++ +    E      + +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVCNAFTYGIENPALYQIKAYSL-EEGISAIAKNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L     V+ L    +    KA+S F      G+  + A   
Sbjct: 232 DQTFHIDSPLLGLFNLYNLLAASACVNELAKPNLKDLEKAISGFGGV--CGRVEQVAKG- 288

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  ++ L         + I V G   +  +  +     + E  
Sbjct: 289 -----VIVDFAHTPDGIEKVLNTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 337

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E                D+VV
Sbjct: 338 AKIAI---ITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRKEAIKKALELKEKDDLVV 394

Query: 449 VKS 451
           +  
Sbjct: 395 ILG 397


>gi|59710872|ref|YP_203648.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59478973|gb|AAW84760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 459

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 138/403 (34%), Gaps = 41/403 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDKNLKYTSGPQWLQEFLLQDRWVMAVAGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + G    L     +  F + E            +  V  RP 
Sbjct: 124 VLEECGYKPGFLVGGVLGNFGESARLG----ESMFFVVEADEYDSAFFDKRSKFVHYRPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +  TG IF    D   E +  +       
Sbjct: 180 TLVLNNLEFDHADIFDDLAAIQRQFHHLIRTVPSTGRIFAPKQDKPLEQVLEQG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +    D Q +  K   + S  +V  +G+++ +V    +G H   N LM +    
Sbjct: 234 -CWSELEFTGEDGQWKAIKLQKDGSQFDVYFEGENVGQVNWDLVGDHNVSNALMVVASAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R          T+ D+ +  +P ++   ++ L   +
Sbjct: 293 HVGVTPDLACEALGKFINTK---RRLELKGEVNGVTVYDD-FAHHPTAIDLTLNGLR--N 346

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LK 415
             G+ + IAVL      M  +G    +         SL+    V+L     +A     + 
Sbjct: 347 KVGDKKIIAVLEPRSSTMK-LGVHKDTL------AASLHAADSVYLYQPDNIAWSVDDVA 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
               +  H H    +D     I +    GD ++V  SN  GF 
Sbjct: 400 QQCTQPAHTH--NNIDAFVDMIVNEAQPGDQILVM-SNG-GFE 438


>gi|15901367|ref|NP_345971.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TIGR4]
 gi|111658364|ref|ZP_01409051.1| hypothetical protein SpneT_02000443 [Streptococcus pneumoniae
           TIGR4]
 gi|225859278|ref|YP_002740788.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           70585]
 gi|25008813|sp|Q97PS8|MURC_STRPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766024|sp|C1C8B2|MURC_STRP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14973011|gb|AAK75611.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           TIGR4]
 gi|225720652|gb|ACO16506.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           70585]
          Length = 444

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF      +    S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 454

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 127/354 (35%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K+ I+ +TG+ GKTTT  +LT  + S        G+  + +           +  
Sbjct: 102 AYDVCKSPILGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY---HMPEGG 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L  I+       P  A++  + P HL+    +E  A+AKA IF       
Sbjct: 159 YLVAELSSYQLETIKSFC----PLGAIVLNVTPDHLARHKTMENYAAAKARIFMNQNPEN 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD     +K  +H+     + S  +    D          E +     L GK+ 
Sbjct: 215 FVVLNDDDPIVRAMKKDAHS----KVLSISQHHKVDSGA-----YFEGNTCYAVLDGKAT 265

Query: 282 EVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V+     H  G H  +N+L  + +   L  +V+     +  FH  E R +R        
Sbjct: 266 PVIDTEHIHIKGSHNIENILAVIALTYALGVEVEHIKHTIEQFHGVEHRLERVTTFH--- 322

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T  ++S   N  S+  A+    +         I + G   +M  L    +      + 
Sbjct: 323 DVTFYNDSKATNTDSVVKALDAFDK-------PVILLAGGHDKMTPLEDFMN------IV 369

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   V   G      +    +    H+H +++M             GD+V++
Sbjct: 370 KAHTKEVIFMGEAADRFESVAVKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLL 423


>gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 449

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIIYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|296504406|ref|YP_003666106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
 gi|296325458|gb|ADH08386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
          Length = 424

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 80  AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 136

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 137 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 192

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I     F  +K     +       + +   +  +G+ +
Sbjct: 193 YSVINADDADVMALSAYSKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 241

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 242 IEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 301

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 302 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 344

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 345 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 396


>gi|319900367|ref|YP_004160095.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides helcogenes P
           36-108]
 gi|319415398|gb|ADV42509.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides helcogenes P
           36-108]
          Length = 480

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 125/370 (33%), Gaps = 37/370 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M    L        C            T   +     + + E    
Sbjct: 115 LCVAGTHGKTTTSTMAAHLLHQS--HVGCTAFLGGISKNYGTNLLLSQSSPYTVIEA--- 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H + P ++VIT     HL  +   E    +       +   G + +     
Sbjct: 170 --DEFDRSFHWLSPWMSVITATDADHLDIYGTKEAYLESFRHYTTLIRPGGALII----- 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + L+ +       T Y++ +++  DF     +    + +++       +  V  G+  
Sbjct: 223 -HKGLELQPDVQPGVTTYTYSRNEG-DFHAENIRIGGGEIFIDFVAPDTRINDVRLGVPV 280

Query: 291 -HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N +  + +  +  A  +   + ++ F   +   +R+   L       + + Y  +
Sbjct: 281 GINIENGIAAMALAHLSGATDEEIKRGMASFRGVD---RRFDFKLKTDETVFLSD-YAHH 336

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           PA +  ++  + ++  + + +  A+      +   ++ F+ D A+ LSL         Y 
Sbjct: 337 PAEIAQSVKSIREL--YQDKKITAIF--QPHLYTRTRDFYKDFADSLSLLDEVILTEIYP 392

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
                + G     + D L   I        + +   +    ++  V++V  +     Y  
Sbjct: 393 AREQPIPGVSSKLIYDNLRPGIEKCICR-KEDILKLLAEKHIE--VLIVLGAGDMDNYTP 449

Query: 459 RLINLLLEEF 468
           ++  LL +  
Sbjct: 450 QITELLKQRL 459


>gi|148992591|ref|ZP_01822259.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168484938|ref|ZP_02709883.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1873-00]
 gi|168488818|ref|ZP_02713017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP195]
 gi|147928608|gb|EDK79622.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP9-BS68]
 gi|172041914|gb|EDT49960.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1873-00]
 gi|183572646|gb|EDT93174.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP195]
 gi|332072314|gb|EGI82797.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA17570]
 gi|332200083|gb|EGJ14156.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA47368]
          Length = 444

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 135/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G   +  DF      +    S   V  +G+++   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEVEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L D       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|30022001|ref|NP_833632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 14579]
 gi|228960130|ref|ZP_04121794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229129190|ref|ZP_04258163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|229146484|ref|ZP_04274855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|60390083|sp|Q819Q2|MURD_BACCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29897557|gb|AAP10833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 14579]
 gi|228637117|gb|EEK93576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|228654427|gb|EEL10292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|228799646|gb|EEM46599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 450

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 IEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus RF122]
 gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus
           aureus]
 gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus COL]
 gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus RF122]
 gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus 04-02981]
 gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O11]
 gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O46]
 gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 449

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIVYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|295102128|emb|CBK99673.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 461

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 133/363 (36%), Gaps = 41/363 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
              R     I ++G+ GKTTT  M+T AL    +   A IG     I       +     
Sbjct: 110 YVSRLYKQSICVSGTHGKTTTTSMITTALELAGRDPSAVIGGKLPLIHGYGKAGKG---- 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E       E       + P+++V+  I   HL  +  + E+  A       L   
Sbjct: 166 DDIVIEA-----CEFSETFLKLTPYLSVVLNIDNDHLDYYGSMGELKFAFKRF--ALMTQ 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-- 278
             IF N DD     +         + + +FG   + D+Q    ++     + E  L+   
Sbjct: 219 FMIFANADDKNTMDVMYTL----DRRVCTFGIDNDGDYQAINVQEYKPG-FFEFDLKEWS 273

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +  +     G H   N L    +       V+    A + F   +G G+R+       
Sbjct: 274 KVTGHIRLAVPGRHNIYNALAMCAVCRFAGLTVEQCAAAAASF---KGAGRRFEVYGECN 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D+ Y  +P  ++A ++   ++   G  R IAV          ++    D  +VL 
Sbjct: 331 GAVVVDD-YAHHPTELRATLNTAKEL---GYKRLIAV--HQPFTYSRTKMLFNDFVDVLK 384

Query: 398 LYNISHV-WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + +++ +  + G             L   +P S+ V   ++++    +++ +  +GD+V+
Sbjct: 385 IPDVAVITPIMGSREPNDPTITSAKLAAQIPGSVLV---DSLEAAADWVKQNAREGDLVI 441

Query: 449 VKS 451
              
Sbjct: 442 TLG 444


>gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 449

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIVYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|84516392|ref|ZP_01003751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509428|gb|EAQ05886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
          Length = 470

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 119/373 (31%), Gaps = 39/373 (10%)

Query: 86  FGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD+ +G   +           +   ++A+TGS GK+TT  ++   L+   +     G+
Sbjct: 95  VPVDNDIGLFFRSFATDDWDGFETTPRVVAVTGSNGKSTTSALIHHILAESGRPAQLAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +           D +  + EL        R LT    P +AV+T ++P HL   +G
Sbjct: 155 IGRGVLDIAP----ARDGEVVVLELSSYQTDLARALT----PDVAVLTNLSPDHLDRHAG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
                +AK  +F          +  D++    L  + +  +G   +      +       
Sbjct: 207 HGGYFAAKRRLFAEGGPD-RAVIGVDENEGRYLANQLAQGVGDDRVVLVSSGQK--LTEA 263

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W   + + ++     G+      +  +    G H  QN      +   L          
Sbjct: 264 AWSVFARKGFLSEYRHGRQVGSIDLRAIAGLPGAHNHQNACAAYAVCRTLGLGPRAI--- 320

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +      G   R +   ++G    +++S   N  S   A+   ++I     G       
Sbjct: 321 EAAMQSYPGLPHRSQLVADRGGVRFVNDSKATNVDSAAKALQAFARIRWICGGL------ 374

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
              E G      H        L  ++  ++ G         LP  +      TM      
Sbjct: 375 -QKEGGLDGLLPH--------LAQVAKAYVIGREAADFARQLP-GVPTEVCTTMARAVAL 424

Query: 437 IQSSLVDGDVVVV 449
             +    GDVV++
Sbjct: 425 AAAEAEPGDVVLL 437


>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
 gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
          Length = 443

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 114/351 (32%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  ++              G+  N + + +         
Sbjct: 95  FAGRYTNSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGNSLALQV----AEDPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I +   K
Sbjct: 151 EYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQNQTK 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     DD   +    K     +   +S  K   +   + + +   EQ          
Sbjct: 207 EDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYTIEQPE-----PFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L       I     +   K+LS F   E    R          
Sbjct: 262 MEQEDLSLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGVE---HRLEKVCKVAGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  +   A+  +           I ++G     G+   + +  + +++   
Sbjct: 319 QYINDSKATNVDACWYALESMRT-------PTILIIG-----GKDKGNDYNSIKDLVKQK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     L D      + +  + +M             GD V++
Sbjct: 367 CAGIVYL-GADNKKLHDNFDDLGLPIRDTHSMKDCVAACAELAKPGDTVLL 416


>gi|323975748|gb|EGB70844.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TW10509]
          Length = 438

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|229134722|ref|ZP_04263531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
 gi|228648768|gb|EEL04794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
          Length = 450

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + ITGS GKTTT  +    L   +K     G+      V   +A++  + +  + EL
Sbjct: 112 APFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQLAKENEVVVTEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +       +P IA    +  AHL      +E   AKA IF+   +     +N 
Sbjct: 169 SSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEADYSIINA 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--H 285
           DD+    L A S   G K ++S  K       ++            +  +G+ +  V   
Sbjct: 225 DDADVMALSAYSK--GQKVLFSTTKEIEDGAYIKDNA---------LYFKGEKVVKVSDI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + I  +L    +  I  L  F   + R +      N+ F+   ++S
Sbjct: 274 VLPGKHNLENILAAMSIAKLLGVSNEAIIAVLKSFTGVKHRLEYVTTINNRKFY---NDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A+S  +Q         I +L    + G                 ++  + 
Sbjct: 331 KATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KHVKAIV 376

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 377 TFGQTAPKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|299534670|ref|ZP_07048002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
 gi|298730043|gb|EFI70586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
          Length = 449

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 126/353 (35%), Gaps = 41/353 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A  I ITGS GKTTT  ++   LS   K     G+      V   +A+     D
Sbjct: 106 AFLISDAPFIGITGSNGKTTTTTLIFDMLSKGSKNPLIAGNIGT---VACGVAKEANQDD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+      +P IA++T +  AHL         A AK  +    + + 
Sbjct: 163 IIVTELSSFQLMGIKTF----KPKIAILTNLYDAHLDYHGTFNNYAEAKFGVTRNQDDSD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N D        A+SHA  I    S G++ N           ++++   +  QG+  
Sbjct: 219 YFIYNADQPIVVGYAAQSHAQKI-PFSSKGRTANG--------ISADET--TIYWQGEPY 267

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N+L  +    ++  D +   + L+ F    G   R +        
Sbjct: 268 MDRANIALPGKHNLENILAAVAACILVGCDKEKMEEVLATFG---GVRHRTQFVREWNGR 324

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S   N  + K+A+              + +L    + G   +     +       
Sbjct: 325 KIYNDSKATNCLATKSALDAFQA--------PVILLAGGLDRGHSFEELRPCM------S 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV 449
           ++  V   G   L   +   +S  V     ++ ++    +      +GDV+++
Sbjct: 371 HVKGVVAFGETGLRFVE-FAKSCGVQQTVIAQNVEDAVQYAAPMSAEGDVILL 422


>gi|261885649|ref|ZP_06009688.1| Mur ligase family protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 412

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 128/345 (37%), Gaps = 30/345 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S   I+ IT S GKT+ K  L   L      Y    S N   G+   +   +  +    I
Sbjct: 89  SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + PH  ++  I  AH+  F  IE +    A   E L  +    
Sbjct: 149 AEAGARLKGDIKDITEFLEPHFVIVGEIGNAHIEYFKSIENVR---ALELEALNSSRI-- 203

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     L + +     K I  +      D  ++        +   +    K +   
Sbjct: 204 ------KKAFLHSSTLKNYDKNIVIY------DILVKNIVSNLHGAKFSILYNAKELHFS 251

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+   + +   L  +  T   A+      E R +R       G   +ID+
Sbjct: 252 SKLLGGFNAYNLCACILLAMELGVNEQTLQNAILKIKSVEHRLERIE----AGGKIIIDD 307

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   MK +  +++  S    G+++ +   + E G+ S   + +L++ ++      V
Sbjct: 308 SFNGNLKGMKESYELVNSYS----GKKVLLTPGIVE-GKSS--LNEELSKKINEVFDIVV 360

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +L   L +   V   +    +  F+ +  V GD+++ 
Sbjct: 361 ITNSLNEKSLTKFLVK-PEVVLLKDRSQMQDFLANHTVAGDLILF 404


>gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 449

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIIYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|303235741|ref|ZP_07322348.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
 gi|302484188|gb|EFL47176.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
          Length = 459

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 141/381 (37%), Gaps = 42/381 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V  RL +    +   G+ GKT+T  M    +        A +G  + + G    L+ 
Sbjct: 101 RAQVLGRLTTTHKGLCFAGTHGKTSTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E       E     H +RP+++VIT+  P HL  +   E    +     E
Sbjct: 160 --DSSDYVVIEA-----DEFDRSFHWLRPYMSVITSTDPDHLDIYGTKEAYLESFRHYTE 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++K GT+ ++ D      L+ K +      +Y + + K  DF     +  +     ++ 
Sbjct: 213 LIQKGGTLVIHTD------LEMKPNVQEGVKVYEYSREKG-DFHAENIRIKNGTIVFDMV 265

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +++ ++          +N +  + +  +     D   K +  +    G  +R+   +
Sbjct: 266 SPIENINDIELGQPIPINIENGIAAMALAQLSGCTSDELRKGMKSY---AGVDRRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 L+ + Y  +P  +  +   L +I P    R+I V+     +   +  F++D A+
Sbjct: 323 MNDQHVLLSD-YAHHPKEILQSAKSLKEIYPD---RKITVIFQ-PHLYSRTNDFYMDFAK 377

Query: 395 VLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS         +Y      + G     + D L   +     E  D +  F +    + D
Sbjct: 378 ALSHFDEVVLTEIYPAREEPIPGVTSALIYDNLDEGVEKQMIE-KDNVVAFAKE--RNFD 434

Query: 446 VVVVKSSNS-----CGFYRLI 461
           V+VV  + +         ++I
Sbjct: 435 VLVVLGAGNLDNYMSELEKVI 455


>gi|300774248|ref|ZP_07084115.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758927|gb|EFK55756.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 452

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 127/385 (32%), Gaps = 49/385 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   + +    IA+ G+ GKTTT  M+   L       +      +       L   
Sbjct: 102 RSQVLGFISASRFTIAVAGTHGKTTTSTMIAHILKDSGYDCSAFLGGISSNYDSNVLFGA 161

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              V   + E       E       + P+IAV+T+    HL  +     +  + +   + 
Sbjct: 162 NNTV---VVEA-----DEYDRSFLTLHPNIAVVTSADADHLDIYGDESHLIESFSLFLDR 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQ 275
           + + GT  +                L  K   S+      D           + + + V 
Sbjct: 214 VVEGGTRIV-------------KTGLPFKGQISYSGKGEGDVYAENIHVRDGEFYFDYVH 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             GK  ++     G H  +N +  +    +L+      +KALS F   + R +       
Sbjct: 261 HDGKISDIHLGIPGIHNVENAVAAITAARLLSIADAKIVKALSTFKGVKRRFEYVV---- 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +   T+  + Y  +P  ++A    +S +      +++ V+     +   ++ F    AEV
Sbjct: 317 RNPQTIYIDDYAHHPEELRA---FISSMRKLYPAKKLTVIFQ-PHLFSRTRDFVDGFAEV 372

Query: 396 LS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           L+         +Y    + + G     L D +        S     +   I+    +  +
Sbjct: 373 LAMADELLLMEIYPARELPIEGVTSTWLADKIALENKRVVSP--QEVLNIIKEEKPE--L 428

Query: 447 VVVKSSNSCGFYRLINLLLEEFPAI 471
           VV   +        I+ L++   AI
Sbjct: 429 VVTVGAGD------IDRLIKPLKAI 447


>gi|15616833|ref|NP_240045.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681586|ref|YP_002467972.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471272|ref|ZP_05635271.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133466|sp|P57310|MURC_BUCAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765987|sp|B8D913|MURC_BUCA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293621|pir||C84955 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10038896|dbj|BAB12931.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624429|gb|ACL30584.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 484

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 157/425 (36%), Gaps = 60/425 (14%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+      +  +  N   + +    +IP+    +++  L               IA++
Sbjct: 79  DFIIK-----SSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKG---------IAVS 124

Query: 115 GSVGKTTTKEMLTIAL--SSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           G+ GKTTT  M+      S +  T      I S N++  +  +         + I E   
Sbjct: 125 GTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSS--------SYFITEADE 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      + P+I ++T I P H+ ++    +++        + +   GT  +  D
Sbjct: 177 SDASFL-----YLNPNIIIVTNIEPDHIDHYDNSFKKLKQTFLIFLKKITLYGTAIVCID 231

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           ++    +           I ++G +KNAD ++  +KQ +      + L+  K + ++ + 
Sbjct: 232 NNAICDILTNLKC----KIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNI 287

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTL 341
            G H A N    + +      + D  I +L  F     R +        +    +    L
Sbjct: 288 PGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQGFDKRANCML 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--- 398
           ID+ Y  +P  +   I  +    P+     I +          + + + D  + LS    
Sbjct: 348 IDD-YGHHPTELSETIKTIRISWPNKN--LIMIF--QPHRYTRTYNLYHDFVQTLSQVDV 402

Query: 399 ------YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 Y+ +  ++ G   L+L + + +    +V      + +   +  +L   D+++++
Sbjct: 403 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 462

Query: 451 SSNSC 455
            + + 
Sbjct: 463 GAGNI 467


>gi|260063711|ref|YP_003196791.1| UDP-N-acetylmuramate--L-alanine ligase [Robiginitalea biformata
           HTCC2501]
 gi|88783156|gb|EAR14329.1| UDP-N-acetylmuramate--L-alanine ligase [Robiginitalea biformata
           HTCC2501]
          Length = 432

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 120/369 (32%), Gaps = 48/369 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  +L   L     +  A +G  +   G       +    +F + E   
Sbjct: 97  LAVAGTHGKTTTSCILAHLLREAGLEVMAFLGGVSEDFGSNF----LMEGTEFSVVEA-- 150

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       + P IA +T++   HL  +     + +   E    +   G + +    
Sbjct: 151 ---DEYDRSFLYLEPDIACVTSMDADHLDIYGDDATLKATFGEFAAKVRPGGVLVV---- 203

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                              ++G   +A + +R  +        ++    +  E V     
Sbjct: 204 ----------RNGLPLEGLTYGIDDDAAYSIRNLRTEDGAYRFDIHTPTRVFESVRFSKP 253

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L    +   +    D  +KA+  F   E R   Y+    QG F    + Y  
Sbjct: 254 GRHNLLNGLAAFTMAVQVAEQPDRLVKAMGSFKGVERRFS-YKIKTEQGIFI---DDYAH 309

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLY 399
           +P  + A    + ++ P  +   +AV      +   ++ F  + A          +L +Y
Sbjct: 310 HPTEIDAVCDAIREMHPGKD--ILAVF--QPHLFSRTRDFGPEFARSLSRFDTIWLLEIY 365

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                 + G     L D +  +      +  + +    + +     +++   +   G   
Sbjct: 366 PAREDPIEGIDSQWLLDQI-ENPRKRLIKKSELIPEITRENPQ---ILLTIGAGDIGLE- 420

Query: 460 LINLLLEEF 468
            ++ + E  
Sbjct: 421 -VDPIKEAL 428


>gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
 gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
          Length = 449

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIVYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|115374632|ref|ZP_01461911.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368398|gb|EAU67354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 431

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 136/410 (33%), Gaps = 34/410 (8%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                + +  +P       LGAL           ++  + + G+ GKTTT  ++   L  
Sbjct: 37  PEATEVRARRLPQMSFPAALGAL--------FLKQSHSVVVAGTHGKTTTSSLMAHVLVD 88

Query: 133 IKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
             K  +  +G    +      + + P  V  G            +FL +  +P  A++T+
Sbjct: 89  AGKDPSFLVGGVTQNYAGNYRVGKGPHFVVEGDEYDTAYWDKGSKFLHY--QPRTAILTS 146

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H   F  +    +   +    +   G + +         +   + A  +  +   G
Sbjct: 147 VEFDHADIFRDLPHYEATFEKFVRLIPPEGQLVVCAAYPNALRIAGGTRARVVTYVAREG 206

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               AD+  RK    +E +  EV  +G  +        G H  +N L  +     L    
Sbjct: 207 --AQADYTPRKVSFGAEGARFEVVERGTVLGTARMELTGLHNVENALSVIAAARGLGLSF 264

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + LS F   +    R +    +    L+ + +  +P +++  I+ + Q  P    R
Sbjct: 265 EEIARGLSSFRGVK----RRQEVRGEPGGILVVDDFAHHPTAVRETIAAIRQRYPE--RR 318

Query: 371 RIAVLGDMCEMGEL----SQSFHIDLAEVLSLYNI----SHVWLSGF-HVLALKDALP-R 420
             A+                  H       +   +      V       V  L +AL  +
Sbjct: 319 LWALFEPRSNTSRRNIHQEDYAHAFTGAARASLKVPERHDKVPTHEELDVPRLCEALKAQ 378

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GF-YRLINLLLEE 467
            I   ++  +  L   +    + GDV++V  SN    GF  +++  L   
Sbjct: 379 GIQADHASDVPSLLERVTREALRGDVLLVM-SNGAFGGFIDKVLAALQAR 427


>gi|257470793|ref|ZP_05634883.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium ulcerans ATCC
           49185]
 gi|317064997|ref|ZP_07929482.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690673|gb|EFS27508.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium ulcerans ATCC
           49185]
          Length = 451

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 152/418 (36%), Gaps = 40/418 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG  +V+ ++ +           + VD+ +  + +  + A L +  T IA+ G+ GKTTT
Sbjct: 59  KGCDMVIASSAIKHDNPEYK---YAVDNGIKIVKRGELLAMLLNDETGIAVAGTHGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M++  +  +  T          I V   L  +  +   G  E  ++   E       +
Sbjct: 116 SSMMSSVMLDLDPT----------IVVGGILPEIGSNAKPGKSEYFVAEADESDNSFLFM 165

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P  AVIT +   HL     +E I  + ++  +  +    + +  D    E LK      
Sbjct: 166 KPSYAVITNVEEDHLDTHGCLENINKSFSQFIDQTKNE--VVVCID---CENLKKLIEKK 220

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             + I ++    + AD      +  + ++   + ++GK+         GYH   N L  +
Sbjct: 221 EKEKIVTYSIRDREADIFAYDIQIENGKTSYNIAIRGKNAGRYTISIPGYHNILNSLPVI 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                   + +   KAL  F   + R     C  ++G   +  + Y  +P  +KA +   
Sbjct: 281 YYAKKFGVNEEFLKKALENFKGSKRRYDILYCNEDKGIKII--DDYAHHPTEIKATLQGA 338

Query: 361 SQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                        PH   R   +L +  +  + ++        +L +Y+       G  V
Sbjct: 339 KSIEHEKLTIIFQPHRYSRVKFLLQNFKDAFDGAEE-----VLLLPIYSAGEKDEFGVTV 393

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             L + L ++  V   +  + +   I +     +V +   +      ++ + + ++  
Sbjct: 394 EDLGNIL-KNEKVVIEKNSEKIDERILN-CQGHEVFMFMGAGDI--SKVAHRIADKLE 447


>gi|225871161|ref|YP_002747108.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           equi 4047]
 gi|254766023|sp|C0M809|MURC_STRE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225700565|emb|CAW95064.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           equi 4047]
          Length = 443

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 124/374 (33%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L+  L  +  T   IG    H           
Sbjct: 93  HEFLGEFMKQFTSLGVAGAHGKTSTTGLLSHVLKHMTATSYLIGDGTGHG---------A 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  + +FE       E         P  ++IT I   H   F+G++++ +A  +  + +
Sbjct: 144 ADARYFVFE-----SDEYERHFMPYHPEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + + +       IY +G     DF      + +  S  +V+ +
Sbjct: 199 KK--ALFVYGEDEELRKISSPA------PIYYYGFEDTDDFVAFDITRTTNGSDFKVKHK 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G ++   H    G H   N    +  + I   D+    + L  F   + R          
Sbjct: 251 GHAIGQFHVPAYGRHNILNATAVIANLFIAGFDMKLVAEHLKSFSGVKRRFTEKVI---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D       + 
Sbjct: 307 -NDTIIIDDFAHHPTEIIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFAHALNEAD 365

Query: 387 SFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y     V      V  L   + R   V   + +  L         D  
Sbjct: 366 SVY-----LAPIYGSAREVDKGDVKVEDLAARVERPAKVISVDNVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|312868276|ref|ZP_07728476.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           F0405]
 gi|311096021|gb|EFQ54265.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           F0405]
          Length = 444

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS+I  T   IG             R      + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSNITDTSYLIGDG---------TGRGSAAAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQISKG--LFIYGEDK 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G  K   DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRRITSSA------PIYYYGFDKETNDFVASNLLRSTTGSTFNVHFRGEDLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++ I   D+D   + L  F   +   +R+   +  G  T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYIAGFDLDLVREHLKTFAGVK---RRFTEKVVNG--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +  E    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L+  + +   +  +E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLEAKIVKRSAIITAENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSSL 439


>gi|307706220|ref|ZP_07643037.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK321]
 gi|307618410|gb|EFN97560.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK321]
          Length = 444

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G ++K  DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAKGNDFVASDLLRSTTGSTFTVHFRGQDLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
 gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
          Length = 464

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 123/360 (34%), Gaps = 40/360 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-L 153
           + +  +A R+   + +I +TGS GKTT   M+ + L       A +     +IGVP T +
Sbjct: 104 IAEPELAYRVM-DSELIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAG---NIGVPATTV 159

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +     D  + EL    L  I  L     PHIAV+  I   HL      E   + K  I
Sbjct: 160 VQKATANDRVVMELSSFMLAGIDQL----HPHIAVVNNIFSNHLDWHKTRENYVNDKMRI 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E   K     +N+D+  ++ L  ++ A     +  F +       +       +     
Sbjct: 216 TENQTKDDYFVINWDNPEWQQLAQRTAA----QVVPFSRQG----LVENGAYAKDGQ--- 264

Query: 274 VQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  + + +         G    +N L  + +  I         + L  F   +    R +
Sbjct: 265 LYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVK---HRIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   +  + + A+            R I ++    + G+       D
Sbjct: 322 YVKTLAGRQFYNDSKATDIEATQVALKAFQ--------RPIILIAGGLDRGDDYTRLVAD 373

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           L       ++  V ++G     +++A   +      ++  +             GDV+++
Sbjct: 374 L-----KPHVKEVIVNGQTAAHMQEAAQAAGVKVVKDSPRVKDSVAIAFEDSQPGDVILL 428


>gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
 gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
          Length = 464

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 123/360 (34%), Gaps = 40/360 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-L 153
           + +  +A R+   + +I +TGS GKTT   M+ + L       A +     +IGVP T +
Sbjct: 104 IAEPELAYRVM-DSELIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAG---NIGVPATTV 159

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +     D  + EL    L  I  L     PHIAV+  I   HL      E   + K  I
Sbjct: 160 VQKATANDRVVMELSSFMLAGIDQL----HPHIAVVNNIFSNHLDWHKTRENYVNDKMRI 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E   K     +N+D+  ++ L  ++ A     +  F +       +       +     
Sbjct: 216 TENQTKDDYFVINWDNPEWQQLAQRTAA----QVVPFSRQG----LVENGAYAKDGQ--- 264

Query: 274 VQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  + + +         G    +N L  + +  I         + L  F   +    R +
Sbjct: 265 LYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVK---HRIQ 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   +  + + A+            R I ++    + G+       D
Sbjct: 322 YVKTLAGRQFYNDSKATDIEATQVALKAFQ--------RPIILIAGGLDRGDDYTRLVAD 373

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           L       ++  V ++G     +++A   +      ++  +             GDV+++
Sbjct: 374 L-----KPHVKEVIVNGQTAAHMQEAAQAAGVKVVKDSPRVKDSVAIAFEDSQPGDVILL 428


>gi|229192082|ref|ZP_04319051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
 gi|228591408|gb|EEK49258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
          Length = 450

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQGAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|160891421|ref|ZP_02072424.1| hypothetical protein BACUNI_03871 [Bacteroides uniformis ATCC 8492]
 gi|156858828|gb|EDO52259.1| hypothetical protein BACUNI_03871 [Bacteroides uniformis ATCC 8492]
          Length = 481

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 129/372 (34%), Gaps = 41/372 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M    L        C            T   +     + + E    
Sbjct: 135 LCVAGTHGKTTTSTMAAHLLHQS--HVGCTAFLGGISKNYGTNLLLSATSPYTVIEA--- 189

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H + P ++VIT   P HL  +   E    +       ++  G + L     
Sbjct: 190 --DEFDRSFHWLSPWMSVITATDPDHLDIYGTKEAYLESFRHYTTLIQPGGALIL----- 242

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + L+ ++      T Y++ +++  DF     +  + + +++       + ++      
Sbjct: 243 -HKGLEMQADVQPGVTTYTYSRNEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGVPV 300

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N +  + +  +  A  +   + ++ F   +   +R+   L       + + Y  +
Sbjct: 301 SINIENGVAAMALAHLSGATDEEIKQGMASFRGVD---RRFDFKLKNDRIVFLSD-YAHH 356

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           PA +  ++  + ++    + ++I V+     +   ++ F+ D A+ LSL         Y 
Sbjct: 357 PAEIAQSVKSVREL---YQDKKITVIFQ-PHLYTRTRDFYRDFADSLSLSDEVILTEIYP 412

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
                + G     + D L   I        + +   +       +V+VV  +        
Sbjct: 413 AREQPIPGVTSQLIYDNLRPGIEKCICR-KEDVLSLLAQ--KHTEVLVVLGAGD--LDNY 467

Query: 459 --RLINLLLEEF 468
             ++  LL E++
Sbjct: 468 APQITQLLSEKY 479


>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
           arsenicoxydans]
 gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 141/445 (31%), Gaps = 59/445 (13%)

Query: 35  RSIAPQEAFFAIK--GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           R++AP   F A        DG DF+  AV  G         ++ +     IP++G  ++ 
Sbjct: 47  RALAPTAEFIAGPFDAALLDGIDFV--AVSPGLMPERELAALIPAAEEKEIPLWGEIELF 104

Query: 93  G-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             AL  L           +IAITG+ GKTT   ++ +       T    G+       P 
Sbjct: 105 AQALAALKEE--RNYTPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI-----SPA 157

Query: 152 TLARMPVDV------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            L R+   V         + EL    L      T+ ++  +A +  +   HL     +  
Sbjct: 158 ALDRLDQAVASDALPQVWVLELSSFQL----HFTYSLQADVATVLNLTQDHLDWHGDMAA 213

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            A  KA IF          LN DD+    +   S A     + +FG  +           
Sbjct: 214 YADDKARIF---GSNTIRVLNRDDARVMQMALPSAA-----VITFGADEAGQANCFGLAD 265

Query: 266 CSEQSWMEVQLQGKSMEVV---------------------HHGIGYHMAQNMLMTLGIVS 304
            +   W+ V +  + +                            G H A N L  L +  
Sbjct: 266 ENGMRWLSVAVAEEELPQKRRKKDNVELAISTKKLMPVDALKIRGQHNAINALSALALCR 325

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +       +  L  +H   G   R    +        D+S   N  +  AA++ L    
Sbjct: 326 AIGLSFAQLLHGLREYH---GEPHRVEHVMTIAGVEYYDDSKGTNVGATVAALNGLGVSQ 382

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
             G    + + G   +  + S      LA+ ++ Y  + V +               + +
Sbjct: 383 DGGAKHLVLIAGGDGKGQDFSP-----LADPVAKYARAVVLIGKDAASIRAAIAATGVEL 437

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
               T++            GD V++
Sbjct: 438 IDCTTLEEATQKAAELAQAGDAVLL 462


>gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 449

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIIYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------AKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|261253809|ref|ZP_05946382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
 gi|260937200|gb|EEX93189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
          Length = 440

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 146/425 (34%), Gaps = 57/425 (13%)

Query: 31  SIDSRSIAPQEAF----FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            ID+R   P         A+    ++ +  +   +      + + T  +  +    IPV 
Sbjct: 39  VIDTRQCPPGSEELTEDVALHSGSWNLNWLLEADLVVANPGIALATPEIQQVLQAGIPVV 98

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           G  ++             +    +IAITGS GK+T  +       +        G+    
Sbjct: 99  GDIELFAW----------QVDKPVIAITGSNGKSTVTDWTGCVAKASGLKVGVGGNIGVP 148

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
               L      +D D  + EL    L      T  ++P  A    ++  H+  + G+ + 
Sbjct: 149 ALDLL-----QLDADLYVLELSSFQL----ETTSSLKPAAATFLNLSEDHMDRYDGMSDY 199

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK  IF+      T  +N DD        +++    + +  F   +       ++   
Sbjct: 200 RQAKLRIFQQ---AKTCVVNADD-------TQTYPDDDRNVVEFSLVEQ-----TRYHLV 244

Query: 267 SEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +E     + +  + +        +G H   N L+ L +++    D+ + + A        
Sbjct: 245 TEGDVEYLAIADRKLCPTQALSLVGRHNVANALVVLALLTESGVDITSGLDA---LKSYN 301

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +   +      +++S   N AS  A     +       G+   ++G + +  + 
Sbjct: 302 GLTHRCQVVADNHGVKWVNDSKATNVASTLA-----ALAGLELAGKLYLLVGGVGKGADF 356

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S     +L  VLS  N+  +   G       + +P         +M  +  ++   +  G
Sbjct: 357 S-----ELKPVLSSLNV-QLCCFGEDG---NEFVPLHPSAKSFTSMQEIVEWLAPQVESG 407

Query: 445 DVVVV 449
           D+V++
Sbjct: 408 DMVLL 412


>gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
 gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
          Length = 130

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+     S    ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSR----SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTK 123
           T K
Sbjct: 116 TVK 118


>gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           prowazekii str. Madrid E]
 gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia
           prowazekii]
 gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia
           prowazekii Rp22]
          Length = 445

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 106/304 (34%), Gaps = 31/304 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +  ++V      +IP+    D+                   IAITG+ GK+TT  +++
Sbjct: 73  VPLTHEVVRIAHHFNIPIISDIDL---------FFEKSKNLKFIAITGTNGKSTTTALIS 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+S    Y   G+            +     +  + EL    L     L       +A
Sbjct: 124 HILNSNGLDYPVAGNIGVP------ALQAKASNEGYVLELSSFQLD----LVKSFTVKVA 173

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  I P HL  +  + +  +AKA+IF+ ++K     +N D+ +   +           +
Sbjct: 174 VLLNITPDHLDRYQDMNDYIAAKAKIFDRMDKDSYAVINIDNDYCRKIFVLLQKDQSIKL 233

Query: 248 YSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             F  +K       +   K        ++ L         +  G H  +N+  +  +  I
Sbjct: 234 IPFSVTKILKNGISIVDDKIHDNDLTYKLPLN-------KNLQGLHNCENIAASYAVAKI 286

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  +    ++++S F        R +   +    +  ++S   N  S   +I  L  I  
Sbjct: 287 IGLESKKILESISSFQSLH---HRMQYIGSINNISFYNDSKATNAISALQSIKALDNIYW 343

Query: 366 HGEG 369
              G
Sbjct: 344 LAGG 347


>gi|237807298|ref|YP_002891738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
 gi|237499559|gb|ACQ92152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
          Length = 430

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 130/375 (34%), Gaps = 54/375 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA ++AITGS GK+T   ++ +            G+        L L   P D    
Sbjct: 96  REAKAPVVAITGSNGKSTVTTLVGLMAEQAGFKVGIGGNIGTP---ALDLLLQPAD--LY 150

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  ++P  AVI  ++  HL  + G+    +AK  IF   +    I
Sbjct: 151 VLELSSFQL----ETTSSLQPAAAVILNLSEDHLDRYDGMAGYLAAKQRIFANAKH---I 203

Query: 224 FLNYDDSFFELLKAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD         +  L  +  Y  SFG +  +  ++    Q  +  W+ V  +    
Sbjct: 204 VVNRDD---------AATLPPQHAYWQSFGLNSESYGRV----QQDDGLWLSVDGKPVLS 250

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               + +G H   N L  + +   +       +  L  F    G   R +   +      
Sbjct: 251 VAELNIVGAHNQMNALAAMALADAVGIPQAAQLTVLRSFT---GLSHRCQFVRDVNGVRW 307

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA+   + +    +GR   + G   +  + S        + L    I
Sbjct: 308 INDSKATNVGSTLAAV---AGVGESVQGRLWLLAGGQGKGQDFSP------LQPLLANQI 358

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             +   G     L +    +  V     +D     + + +  GD V++    +S      
Sbjct: 359 YRMVCFGQDAGILMELADNTQRV---ADLDEAVRSVAAEVQPGDWVLLAPACASLDQFRN 415

Query: 453 ---NSCGFYRLINLL 464
                  F  L+N L
Sbjct: 416 FEQRGQRFADLVNAL 430


>gi|329848047|ref|ZP_08263075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
 gi|328843110|gb|EGF92679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
          Length = 475

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 131/396 (33%), Gaps = 36/396 (9%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+    G+ + + +   ++ +       V   +    +       R++   +AITG+ G
Sbjct: 67  DALMLSPGVPLTHPEPHWTVKAAKAAGVQVLGDIELFARTLARFPARNRPKTVAITGTNG 126

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++   L S  K     G+    +   L L  M     + + E     L     L
Sbjct: 127 KSTTTALIGHILKSAGKNVHVGGNIGIGV---LDLDEMQPGAVY-VIETSSYQLD----L 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +   +P ++++  ++P HL    G++   +AK  IF   EK  T  +  DD +   L ++
Sbjct: 179 SLTFKPDVSILMNLSPDHLDRHGGMDGYIAAKKRIFMNQEKGQTAVIGADDDYTADLISQ 238

Query: 239 SHALGIKTIYSFGKSK--NADFQLRK---WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                   + +    +             +    E++   + L+      V    G H  
Sbjct: 239 MRVSHPVKLVAISSRRVVGDGVYALNGELYDASGERARHIIDLK-----TVRTLTGRHNW 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN          L    +     +  F    G   R +     G    I++S   N  + 
Sbjct: 294 QNGAAAFAACKALGLTNEQIAVGMRSF---PGLAHRMQEIGRIGKVRFINDSKATNADAA 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEM-------------GELSQSFHIDLAEVLSLYN 400
           + A+S   +      G+  A  G + E+             GE ++ F   + +      
Sbjct: 351 RQAMSSFDKFFWIAGGKAKA--GGIDELRDLYPRIKHAFLIGEAAELFEKTIGKAAPCTQ 408

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
              ++ +     A  +   +   V +S        F
Sbjct: 409 SRLLFTATAQAYAEAEKSGKEEIVLFSPACASFDQF 444


>gi|218563230|ref|YP_002345010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|9297095|sp|O69290|MURE_CAMJE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112360937|emb|CAL35738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926835|gb|ADC29187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929485|gb|EFV08681.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 427

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  ++     +     + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--VQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISTIVTNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 232 NQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 288

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 289 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 337

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 338 AKIAI---ITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVV 394

Query: 449 VKS 451
           +  
Sbjct: 395 ILG 397


>gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
 gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
          Length = 519

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++ +A + GA   V         G  ++ V  V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPEGKGMHALIVSNV 93

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN-- 145
              +  L+        +    +IA TG+ GKTT+   L   L  +     A   S ++  
Sbjct: 94  TKAMSLLSAAF-YRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVV 152

Query: 146 ----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +  P +L      R  VD       + +S     +     +   +    
Sbjct: 153 GPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFL 212

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
            I P H+        E+    K ++     K     +N   D F E+  A +      +I
Sbjct: 213 NITPDHIGVNEHPNFEDYLHCKLQLMVNSRK---CIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 248 YSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHM 292
           Y F ++        +  DF+    +    ++  ++  +  +   +          IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +                 G+            ++D  Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQD---CYDGIKNVTIPGRMETLTTANHGTVIVD--YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG 408
           M A +S +         + I V+G     G+   S     +E LSLY  + V+L     G
Sbjct: 385 MIALMSFMQ--KEFDSPKIIVVVGAP---GDKGISRRAGFSESLSLY-ANQVFLTTDDPG 438

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KSS 452
                 + D +   I     + M        +   I+ +  D DVV++  K +
Sbjct: 439 FEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEA-KDDDVVLICGKGA 490


>gi|322390085|ref|ZP_08063620.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 903]
 gi|321143212|gb|EFX38655.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 903]
          Length = 444

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS+I  T   IG             R      + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSNITDTSYLIGDG---------TGRGSAAAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQISKG--LFIYGEDK 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G  K   DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRRITSSA------PIYYYGFDKETNDFVASNLLRSTTGSTFNVHFRGEDLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++ I   D+D   + L  F   +   +R+   +  G  T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYIAGFDLDLVREQLKTFAGVK---RRFTEKVVNG--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +  E    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L+  + +   +  +E +  L         +  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLEAKIVKRSAIITAENVSPLLDH------ENAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSSL 439


>gi|229111382|ref|ZP_04240935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
 gi|228672158|gb|EEL27449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
          Length = 450

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I    +      A  +        E+  +EV       
Sbjct: 219 YSVINADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEK-VIEVS------ 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 272 --DIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q         I +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|255264765|ref|ZP_05344107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
 gi|255107100|gb|EET49774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
          Length = 468

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 127/408 (31%), Gaps = 43/408 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLRSK 107
           +DG    + A+    G+  +  +   +I +       VD+ +G   +        R    
Sbjct: 64  FDG----VSALIVSPGIPHLYPEPNKTIAAAWAAGVPVDNDIGLFFRSYATGDWDRFDVA 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++A+TGS GK+TT  ++   L+ + +     G+    +          +D +  + EL
Sbjct: 120 PQVVAVTGSNGKSTTSALIHHILTEVGRPTQLAGNIGRGVLDIDP----AIDGEVVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P IAV T ++P HL   +G+    +AK  +F          +  
Sbjct: 176 SSYQTDLARSLT----PDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPE-RAVIGV 230

Query: 228 DDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SM 281
           D+   + L       +    I      +    Q   W   + + ++     G+      +
Sbjct: 231 DEVEGQYLSNQMMDGMDPSRIIQISVDRK--LQGPGWNIFARKGFLSEYRNGRQAGSIDL 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +    G H  QN          L        +A    H   G   R +   +Q     
Sbjct: 289 RDIIGLPGAHNHQNACAAYAACRSLGLAPKVIEQA---LHSFGGLPHRSQQIADQDGVRY 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S   A++    I     G     L     +  L                +
Sbjct: 346 VNDSKATNVDSAAKALAAFKNIRWICGG-----LEKEGGLTGLKDQL----------GAV 390

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ G    +    L   +      T+             GD V++
Sbjct: 391 RKAYVIGREAASFARQL-EGVETQICTTIQEAVAAAYQDAEAGDTVLL 437


>gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
 gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
          Length = 452

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 133/347 (38%), Gaps = 38/347 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFE 166
            T++ ITGS GKTTT  +  + L             N  IGVPL+ LA    + D  + E
Sbjct: 112 GTVLGITGSNGKTTTTTLTNLMLHESFPERRTFACGN--IGVPLSQLAEDSKETDIYVTE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       RP +A I  I  AHL      EE   AK +I +   +   +  N
Sbjct: 170 LSSFQLMGIE----AFRPKVACIVNIFSAHLDYHGSREEYVKAKLQITKNQTEEDFLVYN 225

Query: 227 YD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
            D    +E +K  + A    T+  F +       L       E S   +   G+++  + 
Sbjct: 226 ADFPELYEFIKGHTKA----TLVPFSRKS----VLEHGAYTDETS---IYFNGEAVMPIE 274

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N+L  + I  +  A  +   KA+  FH  + R +  +    + F+   +
Sbjct: 275 AIQVPGVQNVENVLAAVAICKLQGATNEGIEKAVRSFHGVKHRTQYVKTIEGRKFY---N 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  + + A+   +  S       + ++    + G   +     L       N+  
Sbjct: 332 DSKATNIIATQTALRSFTNQS-------VVLIAGGLDRGNGFEELESSLG------NVRE 378

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + + G     LK    + SI V   ET++       ++  +G++V++
Sbjct: 379 MVVYGETKEKLKATAEKLSIPVTVVETLEEAVPKAYAASREGEIVLL 425


>gi|255533209|ref|YP_003093581.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter heparinus DSM
           2366]
 gi|255346193|gb|ACU05519.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter heparinus DSM 2366]
          Length = 451

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 137/372 (36%), Gaps = 51/372 (13%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ++   L  S     A +G   ++      +    V     + E   
Sbjct: 116 IAVAGTHGKTTTSSIVAHVLIDSGYGCTAFLGGIASNYNSNFIIGNNNV----VVVEA-- 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       + P +AVIT++   HL  +     +  +     + L+  GT+F+    
Sbjct: 170 ---DEYDRSFLTLHPDLAVITSMDADHLDIYGDAAHLHESFGLFAKQLKPQGTLFV---- 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGI 288
                       L +    S+   +++  + +  +    +   + V    +  ++     
Sbjct: 223 ---------RKGLPLTAGLSYSVGQDSQIKGQNIRVEGSKFVFDYVDTDLRISDIQLMLP 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N +  + +   L  D      A++ F   +   +R+   +N      ID+ Y  
Sbjct: 274 GKHNVENAVAAIAVALKLGIDHHKIKAAIASFTGVK---RRFEYIVNTPDHIYIDD-YAH 329

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LY 399
           +P  ++A    + Q+ P    +++ V+     +   ++ F  + A+VLS         +Y
Sbjct: 330 HPEELRACFDAVRQLYPD---KKLTVIFQ-PHLFTRTRDFAAEFAKVLSTVDELLLLEIY 385

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               + L G +   L D +         + +  +   I+++  +  +++   +       
Sbjct: 386 PARELPLPGINSQFLLDKMSLKSKRICGKDL--VIEEIKNTKPE--LLLTVGAGD----- 436

Query: 460 LINLLLEEFPAI 471
            I+ L++   AI
Sbjct: 437 -IDTLIQPLKAI 447


>gi|170739957|ref|YP_001768612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium sp. 4-46]
 gi|168194231|gb|ACA16178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           sp. 4-46]
          Length = 460

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 117/378 (30%), Gaps = 38/378 (10%)

Query: 55  DFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           DF    +  G           V       +PV G  ++          A     A  +AI
Sbjct: 65  DFAALLLAPGVPFTHPEPHWTVKRAAEAGVPVIGDIELF-----CRERAASAPDAPFVAI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  ++   L          G+    I         P      + E+    + 
Sbjct: 120 TGTNGKSTTTALIAHVLRETGHDVQMGGNIGTAILS----LAPPSRDRVHVIEMSSFQID 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               LT  + P I V+  + P HL     +E  A+ K  +  G        +  DD +  
Sbjct: 176 ----LTPTLAPSIGVLLNVTPDHLDRHGTMENYAAIKERLVAG---ADHAVIGVDDDYTR 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            + A+    G  T    G+   A   L +     + +  E       +  +    G H  
Sbjct: 229 AISARRD--GPLTRVHVGEGAEAPGILARHGLLIDGT-AEPPAPVADLTGIASLRGAHNW 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN  +   +   L    D   +AL  F    G   R      +G    I++S   N  S 
Sbjct: 286 QNAAVAYAVARGLGVAPDAFARALRSF---PGLPHRMEEVGRRGGVLFINDSKATNADST 342

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + A++   ++     G+         E G  S   +           I+  +L G    A
Sbjct: 343 EKALAAFPRVHWILGGK-------PKEGGIESLRAY--------FPRIARAYLIGAASEA 387

Query: 414 LKDALPRSIHVHYSETMD 431
               L     V    T+D
Sbjct: 388 FAATLEGHAPVIRCGTLD 405


>gi|198274307|ref|ZP_03206839.1| hypothetical protein BACPLE_00451 [Bacteroides plebeius DSM 17135]
 gi|198272797|gb|EDY97066.1| hypothetical protein BACPLE_00451 [Bacteroides plebeius DSM 17135]
          Length = 458

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 125/370 (33%), Gaps = 37/370 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   L      + + G+ GKTTT  M    +        C            T   +
Sbjct: 101 RAQVLGMLTQTEKGMCVAGTHGKTTTSTMAAFLMDHS--HVGCNAFLGGISKNYQTNLLL 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E       E     H + P+  VIT     HL  +   E    +  +    
Sbjct: 159 SDKSDYVVIEA-----DEFDRSFHWLTPYATVITATDSDHLDIYGTHEAYLESFRKYTSL 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQ 275
           +   G + +       E L+ K       T+Y++   K  DF     +    + + + + 
Sbjct: 214 IRPDGYLII------KEGLELKPDVQPGVTVYTYSTEKG-DFHAENIRIDDGEIYFDYIS 266

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G    V      +   +N +  + +  I  A  +    A+  F   +   +R+   + 
Sbjct: 267 PLGNITNVQLGVPVFVNIENGIAAMALAQIGGATTEEIKAAMPQFRGVD---RRFDFKIK 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAE 394
                 + + Y  +P  ++ ++S + ++ P+   R+I AV      +   ++ F+ D A+
Sbjct: 324 NSHIVFLSD-YAHHPEEIRQSVSSIRKLYPN---RKITAVF--QPHLYTRTRDFYQDFAD 377

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y      + G     + D L   I      + + +   +++  +  D
Sbjct: 378 SLSLLDEVILLDIYPAREAPIPGVSSQLIYDNLRPGIEKSMC-SKEQIMEVLKNKKL--D 434

Query: 446 VVVVKSSNSC 455
           V++   +   
Sbjct: 435 VLITLGAGDI 444


>gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
 gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
          Length = 449

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 119/352 (33%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  I ITGS GKTTT  ++   L   +K     G+      V   +A+     +
Sbjct: 105 AYEISEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAGNIGT---VACEVAQKATKDN 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I       RP I+++  +  AHL      EE   AKA +F       
Sbjct: 162 VIVTELSSFQLMGIEKF----RPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSED 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGK 279
              +N DD       A   A  +    +   ++ A  +        E+  S  +V L GK
Sbjct: 218 FAVINADDELVMKASADVKATKVPFSVTAQTTEGAYIKNETIFFKDEEVMSLKDVVLPGK 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                      H  +N+L  + +V +     +   + L+ F   +    R +        
Sbjct: 278 -----------HNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVK---HRVQYVTTINKR 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + K A+S  SQ +         +L    + G        +        
Sbjct: 324 KFYNDSKATNMLATKVALSAFSQPT--------ILLAGGLDRGNEFDDLKEEF------K 369

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  V   G     ++     +    V   + +        +   + DV+++
Sbjct: 370 NVKAVITFGETAPKIERVAKEAGIQIVKRVDNVKQAVSEAYACSDEEDVILL 421


>gi|299142299|ref|ZP_07035432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
 gi|298576388|gb|EFI48261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
          Length = 443

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 116/358 (32%), Gaps = 34/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      +  ITGS GKTTT  ++     S        G+    + + +   
Sbjct: 90  ISEIEFAGRYTHSKMVC-ITGSNGKTTTTSLIYHIFKSAGYDVGLAGNIGKSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + EL    L  +    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 146 -AEDPHEYYVIELSSFQLNNM----YDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-M 272
            +      +     DD   +    K         +S  K K +             ++ +
Sbjct: 201 IQNQTPEDSFIYWNDDPVIKKELEKFEIKAYACPFSELKEKGS------IGYIEAGTYKL 254

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E        +      G H   N L      +I     +   K+LS F   E    R   
Sbjct: 255 EYPTPFNMEQEALSLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVE---HRLEK 311

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    I++S   N  +   A+  +           + +LG     G+   + +  +
Sbjct: 312 VCKVGGVQYINDSKATNVDACWYALESMKT-------PTVLILG-----GKDKGNDYTPI 359

Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E++       V+L G     L D      + V  + +M             GD V++
Sbjct: 360 KELVKKKCRGLVYL-GADNRKLHDNFDALDLPVKDTHSMKDCVEACHEMAKSGDTVLL 416


>gi|295104114|emb|CBL01658.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 461

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 129/364 (35%), Gaps = 42/364 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDV 160
              R     I ++G+ GKTTT  M+T AL    +   A IG     I       +     
Sbjct: 110 YVSRLYKQSICVSGTHGKTTTTSMITTALELAGRDPSAVIGGKLPLINGYGKAGKG---- 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E       E       + P+++V+  I   HL  +  + E+  A       L   
Sbjct: 166 DDIVIEA-----CEFAETFLKLTPYLSVVLNIDNDHLDYYGSMGELKFAFKRF--ALMTQ 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-- 278
             IF N DD     +         + + +F    + D++     +     + E  L+   
Sbjct: 219 FMIFANADDKNTMDVMYTL----DRRVRTFAIDNHGDYRAVNINEYKPG-FFEFDLKEWN 273

Query: 279 --KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +     G H   N L    +   +    +   +A   F   +G G+R+     +
Sbjct: 274 TTDTTRIRLSVPGRHNIYNALAMCAVCRFVGLSAEQCAEAALNF---KGAGRRFEV-YGE 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+ + Y  +P  ++A ++   ++   G  R IAV          ++    D  +VL
Sbjct: 330 CNGALVIDDYAHHPTELRATLNTAKEM---GYKRLIAV--HQPFTYSRTKMLFNDFVDVL 384

Query: 397 SLYNISHV-WLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + +I+ +  + G             L   +P S+ V+   ++     +++ +   GD+V
Sbjct: 385 KIPDITVLTPIMGSREPNDPTITSAKLAAQIPGSVLVN---SLQEAADWVKQNAQPGDLV 441

Query: 448 VVKS 451
           +   
Sbjct: 442 ITLG 445


>gi|270295448|ref|ZP_06201649.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D20]
 gi|270274695|gb|EFA20556.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D20]
          Length = 461

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 129/372 (34%), Gaps = 41/372 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M    L        C            T   +     + + E    
Sbjct: 115 LCVAGTHGKTTTSTMAAHLLHQS--HVGCTAFLGGISKNYGTNLLLSATSPYTVIEA--- 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H + P ++VIT   P HL  +   E    +       ++  G + L     
Sbjct: 170 --DEFDRSFHWLSPWMSVITATDPDHLDIYGTKEAYLESFRHYTTLIQPGGALIL----- 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + L+ ++      T Y++ +++  DF     +  + + +++       + ++      
Sbjct: 223 -HKGLEMQADVQPGVTTYTYSRNEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGVPV 280

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N +  + +  +  A  +   + ++ F   +   +R+   L       + + Y  +
Sbjct: 281 SINIENGVAAMALAHLSGATDEEIKQGMASFRGVD---RRFDFKLKNDRIVFLSD-YAHH 336

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           PA +  ++  + ++    + ++I V+     +   ++ F+ D A+ LSL         Y 
Sbjct: 337 PAEIAQSVKSVREL---YQDKKITVIFQ-PHLYTRTRDFYRDFADSLSLSDEVILTEIYP 392

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
                + G     + D L   I        + +   +       +V+VV  +        
Sbjct: 393 AREQPIPGVTSQLIYDNLRPGIEKCICR-KEDVLSLLAQ--KHTEVLVVLGAGD--LDNY 447

Query: 459 --RLINLLLEEF 468
             ++  LL E++
Sbjct: 448 APQITQLLSEKY 459


>gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
 gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
          Length = 430

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 116/385 (30%), Gaps = 56/385 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----- 149
           L +      +     II ITG+ GKTTT  ++   L ++       G+    I       
Sbjct: 46  LAECKRLLGIDENIKIIGITGTNGKTTTAALICATLLNLGYGCGLCGTRGAFINGERIDD 105

Query: 150 -PLTLARM-----------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             LT + +               ++ + E     + + R     +   + + T +   HL
Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEASSHAIAQKRI--ESLDFAMKIFTNLTQDHL 163

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 EE A  K+E F          +N DD                   ++    NAD
Sbjct: 164 DYHGTFEEYARVKSEFFA---DDAPKLINIDDRGG-------IKFNPANALTYALHANAD 213

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKA 316
           F   ++          ++     M +  +  G     N++     + ++    ++    A
Sbjct: 214 FAPGEYSLEG-GIHCALKTPRGQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIALA 272

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            S F   EGR +            L+   +   P  ++  ++ L         + +AV G
Sbjct: 273 ASKFDGVEGRMEVV------SREPLVIVDFAHTPDGIEKVLNALRH------RKIVAVFG 320

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSE 428
                G+  ++    +  +   Y    V  S           +  +   L  +  V    
Sbjct: 321 A---GGDRDRTKRPKMGAIAQKYAHRLVVTSDNPRSEEPETIIAEICGGLEMNERVKCIA 377

Query: 429 TMDGLFLFIQSSLVDGD--VVVVKS 451
                  +   SL   +  V++ K 
Sbjct: 378 NRKEAIKYALESLAQDEILVILGKG 402


>gi|255536695|ref|YP_003097066.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342891|gb|ACU09004.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 458

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 155/406 (38%), Gaps = 66/406 (16%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SS 132
           V     L IP+    ++L A+ K             IA+ G+ GK+TT  ML   L  + 
Sbjct: 89  VQKARELGIPIVKRSELLAAIAK---------SKKTIAVGGTSGKSTTSAMLYQILLDAG 139

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              +        + I             ++ I E   S    I++     +P I ++  I
Sbjct: 140 FDPSIISGAGLTSIIRQGKIGNAAVGKGEWLIIEADESDGSIIQY-----QPEIGLLLNI 194

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG- 251
              H      I+E+ +  +E            +N  ++  + L A +          FG 
Sbjct: 195 DKDHQE----IDELITLFSEFKSN--TNSLFVVNQSNTLAKSLSANAAND-------FGF 241

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +  NA +    +KQ  +   M  +L+G+  ++  + +G H  +N    + +   +  D++
Sbjct: 242 EDANAGYSAENFKQ--DGLLMTFELRGQKFKM--NSLGRHSVENAAAAIAVAHQIGVDLN 297

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI--------SVLSQI 363
           T+ ++L+ +   EG  +R++    +    +ID+ Y  NPA   A+I         V++  
Sbjct: 298 TSAESLAKY---EGIYRRHQILGQKNGVWVIDD-YAHNPAKCAASIRACQPLADKVIAWF 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA------- 413
            PHG G    +  D  E          ++AE L   +   +S ++ +G   +        
Sbjct: 354 QPHGYGPTRFLRNDFVE----------EIAEALRQQDEIWMSEIFYAGGTAVKDISANDL 403

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           ++D   +  +  + E  + L   ++  L  G V+++  +   G   
Sbjct: 404 VEDIRMKGKNASFVEDRNNLLEALRPKLTPGTVLLLMGARDPGLEE 449


>gi|254880791|ref|ZP_05253501.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_3_47FAA]
 gi|254833584|gb|EET13893.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_3_47FAA]
          Length = 465

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 135/407 (33%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V          +  ++      +  V   L      + + G+
Sbjct: 70  ITDAFRDPATTLVVYTPAVPDTHKEF--TYFRENGFEIHKRSQVLGMLTHAGKGLCVAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +    ++ + E       E  
Sbjct: 128 HGKTTTSTMTAHLLHQS--HVGCNAFLGGISKNYGTNLLLSDSSEYMVIEA-----DEFD 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+I+VIT   P HL  +   E    +  +    ++  G + +       + ++
Sbjct: 181 RSFHWLSPYISVITATDPDHLDIYGTKEAYLESFRKYTSLIQPGGALII------RKGIE 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +        +Y++ + +  DF     +  + + + + V   G    +          +N
Sbjct: 235 LQPALQNGVKLYTYSQEEG-DFHAENIRIGNGEIFFDYVSPLGNIPNIQLGVPVSINIEN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 294 GVAAMALAQMSGLTDEEIKRGMASFRGVD---RRFDFKIKNDKVVFLSD-YAHHPSEIKQ 349

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +I  +  +  + + +  AV      +   ++ F+ D A+         ++ +Y      +
Sbjct: 350 SILSMRAL--YRDKKLTAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 405

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +         +L  GD+
Sbjct: 406 PGVTSKLIYDHLRPGIEKSMCK-KEEILDVLSKKDIEVLITLGAGDI 451


>gi|237724910|ref|ZP_04555391.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D4]
 gi|229436648|gb|EEO46725.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides dorei 5_1_36/D4]
          Length = 465

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 135/407 (33%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V          +  ++      +  V   L      + + G+
Sbjct: 70  ITDAFRNPATTLVVYTPAVPDTHKEF--TYFRENGFEIHKRSQVLGMLTHAGKGLCVAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +    ++ + E       E  
Sbjct: 128 HGKTTTSTMTAHLLHQS--HVGCNAFLGGISKNYGTNLLLSDSSEYMVIEA-----DEFD 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+I+VIT   P HL  +   E    +  +    ++  G + +       + ++
Sbjct: 181 RSFHWLSPYISVITATDPDHLDIYGTKEAYLESFRKYTSLIQPGGALIV------RKGIE 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +        +Y++ K +  DF     +  + + + + V   G    +          +N
Sbjct: 235 LQPALQNGVKLYTYSKEEG-DFHAENIRIGNGEIFFDYVSPLGNIPNIQLGVPVSINIEN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 294 GVAAMALAQMSGLTDEEIKRGMASFRGVD---RRFDFKIKNDKVVFLSD-YAHHPSEIKQ 349

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +I  +  +  + + +  A+      +   ++ F+ D A+         ++ +Y      +
Sbjct: 350 SILSMRAL--YRDKKLTAIF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 405

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +         +L  GD+
Sbjct: 406 PGVTSKLIYDHLRPGIEKSMCK-KEEILDVLSKKDIEVLITLGAGDI 451


>gi|323964816|gb|EGB60283.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           M863]
 gi|327255066|gb|EGE66669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           STEC_7v]
          Length = 438

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|323494203|ref|ZP_08099317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
 gi|323311544|gb|EGA64694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
          Length = 451

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 147/409 (35%), Gaps = 32/409 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNSQIRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESVFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +E I      +   +   G I     D   E +   S     +
Sbjct: 180 TLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQDMDLEDVL--SRGCWSE 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           T +S    K  D+Q    K  ++ S  +V  QG+ + +V    +G H   N LM +    
Sbjct: 238 TEFS---GKQGDWQAE--KLIADGSQFKVFFQGEEVGIVNWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A ++L+ F   +   +R          T+ D+ +  +P +++  +  L    
Sbjct: 293 HVGVTPDLACESLAKFINTK---RRLELKGEVNGVTVYDD-FAHHPTAIELTLGGLRN-K 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
              + + IAVL        + +  H D     SL     V+L     +  +++D   +  
Sbjct: 348 VGDDNKIIAVLE--PRSATMKRGVHKDTL-AASLAKADEVFLYQPESIEWSVEDIARQCQ 404

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLE 466
                S+++D L   I SS   GD ++V  SN  GF     +L+  L E
Sbjct: 405 QPAQVSDSVDQLVDKIVSSAKSGDHILVM-SNG-GFEGIHGKLLAKLAE 451


>gi|294634491|ref|ZP_06713026.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
 gi|291092005|gb|EFE24566.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
          Length = 456

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 140/412 (33%), Gaps = 36/412 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M+  
Sbjct: 64  LVIIGNAMARGNPCVEAILERNIPYVSGPQWLHDEVLRHRWVIAVAGTHGKTTTAGMVNW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    D  F + E            +  V   P  
Sbjct: 124 ILEACG---YQPGFVIGGVPGNFEVSARLGDSPFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  +  I      +   +   G I    +D+  + + A       + 
Sbjct: 181 LILNNLEFDHADIFDDLRAIQKQFHHLVRLVPGKGRIISPANDANLKQVLAMGCWSEQEQ 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
                  + A +  +  K   + S   V L G+ + EV    +G H   N LM +     
Sbjct: 241 -----SGEGAAWHAQ--KLSPDASHFVVTLDGERVGEVQWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A +AL+ F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVPPAEACRALASFINAR---RRLELRGEAYGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGF-----HVLALKDALP 419
            G  R +AVL    E    +    +   E+         V+L         V+ + +A  
Sbjct: 349 GGTARILAVL----EPRSNTMKMGVCKNELAPALGRADEVYLYQPQHIPWQVVEVAEACV 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
           +    H+S  +D L   I  +   GD ++V  SN  GF     RL+  L ++
Sbjct: 405 Q--PAHWSADLDTLVDMIVKNAQPGDHILVM-SNG-GFGGIHERLLQALAQK 452


>gi|103487383|ref|YP_616944.1| Mur ligase, middle region [Sphingopyxis alaskensis RB2256]
 gi|98977460|gb|ABF53611.1| Mur ligase, middle region [Sphingopyxis alaskensis RB2256]
          Length = 462

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 88/426 (20%), Positives = 157/426 (36%), Gaps = 46/426 (10%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAITGSV 117
           Q G+G+    T + ++    S+P     + LG L +++ A    A   + A  + + G+ 
Sbjct: 60  QDGSGVAAGQTLVASAAVEDSVPDVAAANTLG-LARMSRADLNAALFNAAAKGVGVGGTS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GK+T   M+   L    +    + G+   +   P T     +     I+   +S + E  
Sbjct: 119 GKSTVTGMIGWILERAGQKPTVMNGAVMRNFASPDTPFASALVGGDAIY---VSEVDESD 175

Query: 177 FLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
               L  P +AV+T I+  H  L     +    +AKA I           +N DD     
Sbjct: 176 GSIALYAPDVAVVTNISLDHKSLDELHRLFGDFAAKARI---------AVINADDPESAP 226

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L A ++      +  FG   NA  +   ++         V     S +V     G H A 
Sbjct: 227 LLAGAN------VLRFGFGDNAAIRGSDFEPLPNGCRFAVHFAADSHDVRLQMPGRHNAA 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +     L   V  ++ AL+ F    G  +RY      G  T+ID+ +  NP  + 
Sbjct: 281 NALAAIAAARALNIPVAQSVAALADF---AGLARRYEVLGQAGDVTVIDD-FAHNPDKVA 336

Query: 355 AAISVLSQISPHGEGRRIAVL-----GDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSG 408
           A ++ ++++     GR +        G + +MG EL+ SF   + +   LY    V+  G
Sbjct: 337 ATLAAVAELP----GRALLFFQPHGYGPLRQMGKELATSFAAGMRDGDRLYVCDPVYFGG 392

Query: 409 FHVLAL------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
               ++       D +       +  T       +      GD +++  +          
Sbjct: 393 TVDRSIGSEALVADIVAGGADAVHLTTRANCGAAMLDEARPGDRILILGARDDTLTAFGR 452

Query: 463 LLLEEF 468
            LLE+ 
Sbjct: 453 ELLEKL 458


>gi|94267893|ref|ZP_01291025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [delta proteobacterium MLMS-1]
 gi|93451812|gb|EAT02562.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [delta proteobacterium MLMS-1]
          Length = 489

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 123/372 (33%), Gaps = 39/372 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
             +      LR+K +++ + G+ GKTTT  +L  AL+      A        +      +
Sbjct: 111 FPQALSHYFLRTKRSLV-VAGTHGKTTTASLLATALAQAG--LAPGFMIGGIVQAFGRSS 167

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHL-----VRPHIAVITTIAPAHLSNFSGIEEIASA 209
           R+      G F +      +  F          RP IA+IT +   H   +  +  + +A
Sbjct: 168 RL----GDGPFFVSEGDEYDTAFFDKGPKFLHYRPEIAIITGVEFDHADIYPDLAAVKAA 223

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            A +   +   G +    DD     L   ++      +  +G+ +   +QL +       
Sbjct: 224 FARLIALMPPHGALVACLDDPVTAELTTAANC----PVLGYGEHQGLSWQLTELAISPGT 279

Query: 270 SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +      +GK          G H A N L  + ++  L    +    AL+ F    G  +
Sbjct: 280 TTFTALKEGKPFGRFQSRLPGRHNALNALAVIAVLEQLGLGAEAIAGALAAFT---GVRR 336

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R          T+ID+ +  +P    AA   L  +     GRR+  + +        + F
Sbjct: 337 RQEVRGEVAGVTVIDD-FAHHPT---AARETLQALKAAYPGRRLLAVFEPRTNSSRRRVF 392

Query: 389 HIDLAEVLSLYNISHVWL---SGFHVLALKDAL----------PRSIHVHYSETMDGLFL 435
               A   +      V L    G   +A ++                      T   +  
Sbjct: 393 QQ--AYSSAFGAADRVLLRVPEGLEAIAAEERFSVEQLAAELCATGQPASSFATTADILA 450

Query: 436 FIQSSLVDGDVV 447
            + ++   GDVV
Sbjct: 451 ELAATTRPGDVV 462


>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
           symbiont]
          Length = 439

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 134/347 (38%), Gaps = 37/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        LTL + P  + + 
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---ALTLLKSPAQL-YV 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 157 VLELSSFQL----ETTYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN---ADI 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     ++        +   SFG     D+ L    Q    +W+ V+ +     
Sbjct: 210 CVVNADDGMTMPVRG-----ADRRCVSFGIDVG-DYHL---NQQQGSTWLRVKGEKVLNT 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +   + +++KA        G   R++          I
Sbjct: 261 DEMKLVGQHNYTNALAALALADAVNIPLASSLKA---LTTYSGLPHRFQLVHEAHGVRWI 317

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       +G    +LG   +  + +      LA  L   N+ 
Sbjct: 318 NDSKATNVGSTEAALNGL-----QVKGTLWLLLGGDGKGADFTP-----LARYLQGDNV- 366

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G H  AL    P       ++T++     I + +  GD+V++
Sbjct: 367 RLFCFGRHGDALAALRP--AVATCTDTLEQGMTQIAAQVQAGDMVLL 411


>gi|296875958|ref|ZP_06900017.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433033|gb|EFH18821.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 444

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 139/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS+I  T   IG             R      + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSNITDTSYLIGDG---------TGRGSAAAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQISKG--LFIYGEDK 209

Query: 231 FFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G   +N DF      + +  S   V  +G+ +   H    
Sbjct: 210 ELRRITSSA------PIYYYGFDKENNDFVASNLLRSTTGSTFNVHFRGEDLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++ I   D++   + L  F   +   +R+   +  G  T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLHIAGFDLNLVREHLKTFAGVK---RRFTEKVVNG--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +  E    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L+  + +   +  +E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLEAKIVKRSAIITAENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSSL 439


>gi|256820919|ref|YP_003142198.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea DSM
           7271]
 gi|256582502|gb|ACU93637.1| UDP-N-acetylmuramate/alanine ligase [Capnocytophaga ochracea DSM
           7271]
          Length = 450

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 117/339 (34%), Gaps = 42/339 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +      +A+ G+ GKTTT  +L   L       A + ++   I        +
Sbjct: 101 RSEVLGFITKNTFCLAVAGTHGKTTTSSILAHLLVEAG---ASVSAFLGGIAENFNSNLV 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               ++ + E        +R     + P+IA IT++   HL  +   E +     E    
Sbjct: 158 LKGSEYTVAEADEFDRSFLR-----LSPNIACITSMDADHLDIYGDKEHLIEGFREFAGK 212

Query: 217 LEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           ++  G++ + N  D   E               ++G   NAD+  +     +     +  
Sbjct: 213 IKPGGSLIVRNGLDIEGE---------------TYGLEDNADYTFQNITVKNGIYHFDFH 257

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G    +      G H   N L  + +        +  +  L+ F   +   +R+   +
Sbjct: 258 YKGGVYKDYTLLKPGRHNLLNALAAVSMAVKAGFAPEKLLPHLATFKGVK---RRFSYII 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F  ID+ Y  +P+ + A    + ++ PH    +  V      +   ++ F  D A+
Sbjct: 315 KEDNFAFIDD-YAHHPSEINALFQAVEEMYPHTP--KTIVF--QPHLFTRTRDFLDDFAK 369

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    +L +Y    + + G     L D +     +
Sbjct: 370 SLSQFDDVVLLDIYPARELPIEGITSQVLLDKVTAKQKI 408


>gi|310819950|ref|YP_003952308.1| UDP-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309393022|gb|ADO70481.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 136/410 (33%), Gaps = 34/410 (8%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                + +  +P       LGAL           ++  + + G+ GKTTT  ++   L  
Sbjct: 94  PEATEVRARRLPQMSFPAALGAL--------FLKQSHSVVVAGTHGKTTTSSLMAHVLVD 145

Query: 133 IKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
             K  +  +G    +      + + P  V  G            +FL +  +P  A++T+
Sbjct: 146 AGKDPSFLVGGVTQNYAGNYRVGKGPHFVVEGDEYDTAYWDKGSKFLHY--QPRTAILTS 203

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H   F  +    +   +    +   G + +         +   + A  +  +   G
Sbjct: 204 VEFDHADIFRDLPHYEATFEKFVRLIPPEGQLVVCAAYPNALRIAGGTRARVVTYVAREG 263

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               AD+  RK    +E +  EV  +G  +        G H  +N L  +     L    
Sbjct: 264 --AQADYTPRKVSFGAEGARFEVVERGTVLGTARMELTGLHNVENALSVIAAARGLGLSF 321

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + LS F   +    R +    +    L+ + +  +P +++  I+ + Q  P    R
Sbjct: 322 EEIARGLSSFRGVK----RRQEVRGEPGGILVVDDFAHHPTAVRETIAAIRQRYPE--RR 375

Query: 371 RIAVLGDMCEMGEL----SQSFHIDLAEVLSLYNI----SHVWLSGF-HVLALKDALP-R 420
             A+                  H       +   +      V       V  L +AL  +
Sbjct: 376 LWALFEPRSNTSRRNIHQEDYAHAFTGAARASLKVPERHDKVPTHEELDVPRLCEALKAQ 435

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GF-YRLINLLLEE 467
            I   ++  +  L   +    + GDV++V  SN    GF  +++  L   
Sbjct: 436 GIQADHASDVPSLLERVTREALRGDVLLVM-SNGAFGGFIDKVLAALQAR 484


>gi|258625793|ref|ZP_05720672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
 gi|258582031|gb|EEW06901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
          Length = 451

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 143/413 (34%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMVAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D       A     G  +
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEAL----ADVFKRGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   +  ++Q  K    ++ S   V L G+ + +V    +G H   N LM +     
Sbjct: 237 ETEFS-GEQGEWQAEKI--TADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R           + D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVAVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALP 419
            G+ + IAVL      M  +G   ++         SL++   V+L     +  ++++   
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADTVYLYQPSNIPWSVEEVAK 400

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
           + +     S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCAQPAQVSANMDEFVAMIAKEAKVGDQILVM-SNG-GFEGIHGKLMAALQQK 451


>gi|163941652|ref|YP_001646536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           weihenstephanensis KBAB4]
 gi|226711883|sp|A9VU74|MURD_BACWK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|163863849|gb|ABY44908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 450

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + ITGS GKTTT  +    L   +K     G+      V   +A++  + +  + EL
Sbjct: 112 APFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQLAKENEVVVTEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +       +P IA    +  AHL      +E   AKA IF+   +T    +N 
Sbjct: 169 SSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETDYSIINA 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--H 285
           DD+    L A S   G K ++S  K       ++            +  +G+ +  V   
Sbjct: 225 DDADVMALSAYSK--GQKVLFSTTKEIEDGAYIKDNA---------LYFKGEKVVKVSDI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   ++S
Sbjct: 274 VLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFY---NDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A+S  +Q         I +L    + G                 ++  + 
Sbjct: 331 KATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KHVKAIV 376

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 377 TFGQTAPKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|255037241|ref|YP_003087862.1| UDP-N-acetylmuramate--L-alanine ligase [Dyadobacter fermentans DSM
           18053]
 gi|254949997|gb|ACT94697.1| UDP-N-acetylmuramate/alanine ligase [Dyadobacter fermentans DSM
           18053]
          Length = 468

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 136/373 (36%), Gaps = 37/373 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
           L +  V   L      I + G+ GKTTT  ++   L      + A +G    + G  L L
Sbjct: 103 LKRSQVLGILTQNLRTIGVAGTHGKTTTSSLVAHILRHAHVNSTAFLGGITQNYGTNL-L 161

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              P D    +F +  +   +  FLT  + P IA++T+    HL  +   E +  +  + 
Sbjct: 162 LNEPTDKLEEVFCVVEADEFDRSFLT--LFPEIAIVTSTDADHLDIYGKHEAVLESFRDY 219

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              ++  G +FL       +  KAK        ++++  +    +     +  + +   +
Sbjct: 220 VGQIDGNGALFLRDGLEIADSCKAK--------VFTYSLNSGL-YHSENIRIENARFVFD 270

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +   G  +  +     GYH  +N +    +   +        +AL  +   +   +R+  
Sbjct: 271 LVYPGGVIGGIAMKIPGYHNIENSIAASAVALYIGVQPTKIREALESYGGVK---RRFEY 327

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHID 391
            L +     ID+ Y  +P  ++A    LS +     GR + A+      +   ++ F   
Sbjct: 328 QLEEKGNVYIDD-YAHHPTEIEA---FLSSVKGLYPGRHVTAIF--QPHLFTRTRDFADG 381

Query: 392 LAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            AE         VL +Y    + + G     + D +  +     +   + +   ++    
Sbjct: 382 FAESLSLADRLLVLDIYPARELPIGGVDSQMILDKVTVADKQLVA--KEQVLQLLKEL-- 437

Query: 443 DGDVVVVKSSNSC 455
           + D+VV   +   
Sbjct: 438 NTDIVVTIGAGDI 450


>gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 517

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 158/488 (32%), Gaps = 75/488 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P    R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSM- 281
           +  A +     ++IY F    +A F+ ++            +    +S   +    +   
Sbjct: 253 VYAAATTTTYPESIYLF---ASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAA 309

Query: 282 ------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       IG     N    +    +   D   A+  ++     +  G+     + 
Sbjct: 310 ALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAK---VKIPGRMEHTKVA 366

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +D  Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 367 GHGAVYVD--YAHNYASMKALLSFLKH--AYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDV 446
           L+ +       +          + + +   I      VH             S     D+
Sbjct: 420 LTEFATEAFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDI 479

Query: 447 VVV--KSS 452
           VVV  K +
Sbjct: 480 VVVAGKGA 487


>gi|315185898|gb|EFU19663.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 459

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 130/398 (32%), Gaps = 32/398 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKE 124
           + +       + I    V      L+                ++ I+A+TGS GK+TT  
Sbjct: 69  HREEDFLEADVVIKNPAVPRTSRFLSLARHVETDISLFLKACRSPILAVTGSKGKSTTAS 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   LS+        G+       PLT  R   +    + EL    LG++        P
Sbjct: 129 ALHHILSAAFPGARLGGNITTS---PLTFLRELSEETPVVLELSSWQLGDLGGRISFT-P 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A +T I P H + ++ +E     K  I    + + T      D +   + A + A  +
Sbjct: 185 QVAALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTFLYPAFDPWGRWMAANTPATAL 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                F +   +      +    E  +++   +   +       G H   N+L+   +  
Sbjct: 245 P---FFEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLPERLLVPGAHNRLNLLLAGAMAY 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D       LS F    G   R      +G     ++S    P ++ AA+S      
Sbjct: 302 TFGTDPALIRTRLSSF---PGIPHRLELVREKGGVAFYNDSAATIPDAVLAAVSAF---- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              E     + G   +  +LS   +  LA+      ++   L G     L   L  S   
Sbjct: 355 ---ECPVHLITGGTDKNLDLSP--YRGLAD----KPVTVYLLEGSATRRLLPLLEESGIS 405

Query: 425 HYSE--TMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
           +     +++            G+VV+    + S   +R
Sbjct: 406 YLGPYRSLEEALAEAHHRASSGEVVLFSPGAASFEMFR 443


>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 454

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 127/354 (35%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K+ I+ +TG+ GKTTT  +LT  + S        G+  + +           +  
Sbjct: 102 AYDVCKSPILGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY---HMPEGG 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L  I+       P  A++  + P HL+    +E  A+AKA IF       
Sbjct: 159 YLVAELSSYQLETIKSFC----PLGAIVLNVTPDHLARHKTMENYAAAKARIFMNQNPEN 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD     +K  +H+     + S  +    D          E +     L GK+ 
Sbjct: 215 FVVLNDDDPIVRAMKKDAHS----KVLSISQHHKVDSGA-----YFEGNTCYAVLDGKAT 265

Query: 282 EVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V+     H  G H  +N+L  + +   L  +V+     +  FH  E R +R        
Sbjct: 266 PVIDTEHIHIKGSHNIENILAVIALTYALGVEVEHIKHIIEQFHGVEHRLERVTTFH--- 322

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T  ++S   N  S+  A+    +         I + G   +M  L    +      + 
Sbjct: 323 DVTFYNDSKATNTDSVVKALDAFDK-------PVILLAGGHDKMTPLEDFMN------IV 369

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   V   G      +    +    H+H +++M             GD+V++
Sbjct: 370 KAHTKEVIFMGEAADRFESVAVKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLL 423


>gi|110804152|ref|YP_687672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 5 str. 8401]
 gi|110613700|gb|ABF02367.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri 5
           str. 8401]
          Length = 438

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L+ L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|333010584|gb|EGK30017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           VA-6]
          Length = 438

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|319639801|ref|ZP_07994531.1| UDP-N-acetylmuramate-L-alanine ligase [Bacteroides sp. 3_1_40A]
 gi|317388618|gb|EFV69467.1| UDP-N-acetylmuramate-L-alanine ligase [Bacteroides sp. 3_1_40A]
          Length = 458

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 135/407 (33%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V          +  ++      +  V   L      + + G+
Sbjct: 63  ITDAFRDPATTLVVYTPAVPDTHKEF--TYFRENGFEIHKRSQVLGMLTHAGKGLCVAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +    ++ + E       E  
Sbjct: 121 HGKTTTSTMTAHLLHQS--HVGCNAFLGGISKNYGTNLLLSDSSEYMVIEA-----DEFD 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+I+VIT   P HL  +   E    +  +    ++  G + +       + ++
Sbjct: 174 RSFHWLSPYISVITATDPDHLDIYGTKEAYLESFRKYTSLIQPGGALII------RKGIE 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +        +Y++ + +  DF     +  + + + + V   G    +          +N
Sbjct: 228 LQPALQNGVKLYTYSQEEG-DFHAENIRIGNGEIFFDYVSPLGNIPNIQLGVPVSINIEN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 287 GVAAMALAQMSGLTDEEIKRGMASFRGVD---RRFDFKIKNDKVVFLSD-YAHHPSEIKQ 342

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +I  +  +  + + +  AV      +   ++ F+ D A+         ++ +Y      +
Sbjct: 343 SILSMRAL--YRDKKLTAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 398

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +         +L  GD+
Sbjct: 399 PGVTSKLIYDHLRPGIEKSMCK-KEEILDVLSKKDIEVLITLGAGDI 444


>gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 519

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++ +A + GA   V         G  ++ V  V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPEGKGMHALIVSNV 93

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN-- 145
              +  L+        +    +IA TG+ GKTT+   L   L  +     A   S ++  
Sbjct: 94  TKAMSLLSAAF-YRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVV 152

Query: 146 ----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +  P +L      R  VD       + +S     +     +   +    
Sbjct: 153 GPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFL 212

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
            I P H+        E+    K ++     K     +N   D F E+  A +      +I
Sbjct: 213 NITPDHIGVNEHPNFEDYLHCKLQLMVNSRK---CIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 248 YSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHM 292
           Y F ++        +  DF+    +    ++  ++  +  +   +          IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +                 G+            ++D  Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQD---CYDGIKNVTIPGRMETLTTAHHGTVIVD--YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG 408
           M A +S +         + I V+G     G+   S     +E LSLY  + V+L     G
Sbjct: 385 MIALMSFMQ--KEFDSPKIIVVVGAP---GDKGISRRAGFSESLSLY-ANQVFLTTDDPG 438

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KSS 452
                 + D +   I     + M        +   I+ +  D DVV++  K +
Sbjct: 439 FEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEA-KDDDVVLICGKGA 490


>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
          Length = 457

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 127/373 (34%), Gaps = 48/373 (12%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV G  D +              K  +I +TGS GK+TT  ++   L       A  G+
Sbjct: 96  IPVIGEIDFVA----------PHIKGKVIGVTGSNGKSTTTMLIGHLLKKYGYKTAVAGN 145

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             N + +  +      ++DF + EL    L    +  HL++ H+A++T +AP H+     
Sbjct: 146 IGNPLSLHAS-----QNLDFIVIELSSFQL----YWAHLLKSHVAIVTNLAPDHIDWHGS 196

Query: 203 IEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
                 AKA +    E      + N D    +L    S    + ++Y  G+         
Sbjct: 197 FTNYLKAKARLVRLQEPGHWAVVQNRDVDALQL----SGKSAVASLYWEGQEP---VHKT 249

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               C  +    +    K +   +     IG H  +N+ MT   + +             
Sbjct: 250 DAYICMGEQEAWLSYNKKELLFDYRDVDLIGRHNLENLAMTASALILGGVP---CSNLTK 306

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                     R            ID+S   N A+   A++ +        G ++ +LG  
Sbjct: 307 QLSDFIPLPHRCTFVAEINGVRYIDDSKGTNVAASATALTSI-------HGPKVVILGGQ 359

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLF 436
            +  + S      LAE           + G     +  AL  +    +   ++M+     
Sbjct: 360 GKGEDYSP-----LAE-AVKKEARVAIVLGAEKKPIVTALEGAGFARHIEVDSMEDAVKA 413

Query: 437 IQSSLVDGDVVVV 449
             +  + G+ V++
Sbjct: 414 AMALSLPGETVLL 426


>gi|237709496|ref|ZP_04539977.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 9_1_42FAA]
 gi|265754702|ref|ZP_06089754.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_1_33FAA]
 gi|229456552|gb|EEO62273.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 9_1_42FAA]
 gi|263234816|gb|EEZ20384.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_1_33FAA]
          Length = 458

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 135/407 (33%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V          +  ++      +  V   L      + + G+
Sbjct: 63  ITDAFRNPATTLVVYTPAVPDTHKEF--TYFRENGFEIHKRSQVLGMLTHAGKGLCVAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +    ++ + E       E  
Sbjct: 121 HGKTTTSTMTAHLLHQS--HVGCNAFLGGISKNYGTNLLLSDSSEYMVIEA-----DEFD 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+I+VIT   P HL  +   E    +  +    ++  G + +       + ++
Sbjct: 174 RSFHWLSPYISVITATDPDHLDIYGTKEAYLESFRKYTSLIQPGGALIV------RKGIE 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +        +Y++ K +  DF     +  + + + + V   G    +          +N
Sbjct: 228 LQPALQNGVKLYTYSKEEG-DFHAENIRIGNGEIFFDYVSPLGNIPNIQLGVPVSINIEN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 287 GVAAMALAQMSGLTDEEIKRGMASFRGVD---RRFDFKIKNDKVVFLSD-YAHHPSEIKQ 342

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +I  +  +  + + +  A+      +   ++ F+ D A+         ++ +Y      +
Sbjct: 343 SILSMRAL--YRDKKLTAIF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 398

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +         +L  GD+
Sbjct: 399 PGVTSKLIYDHLRPGIEKSMCK-KEEILDVLSKKDIEVLITLGAGDI 444


>gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 438

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G          P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQFAALRPE--IAQQTETMEEAMRLLAPRVQPGDMVLL 410


>gi|42524582|ref|NP_969962.1| hypothetical protein Bd3200 [Bdellovibrio bacteriovorus HD100]
 gi|62900538|sp|Q6MIF8|MURD_BDEBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39576791|emb|CAE80955.1| murD [Bdellovibrio bacteriovorus HD100]
          Length = 462

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 115/348 (33%), Gaps = 28/348 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K  II +TG+ GKTT  ++    L+         G+    +       R+       I 
Sbjct: 111 IKEPIIGLTGTNGKTTVAKITEAILTESGVKTWVGGANEKPLVDY---LRLDDKAQVVIA 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L           P   V T +A  HL  +  +EE  +AK  IF+   +  T  L
Sbjct: 168 EVSSFMLEH----CDTFNPGNIVFTNLAENHLDRYRSMEEYVNAKRRIFKNTNQATTSIL 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV 284
           N DD+    L A+  A+    I+ F +    + Q+            + V+   +     
Sbjct: 224 NADDNAVVEL-ARDPAVQRGRIFYFSRKPALEPQIMNIGGAVNIGDEIRVRTGPEIESFN 282

Query: 285 HHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             G+   G H  +N++  +       A  +   K ++ F    G   R       G    
Sbjct: 283 IKGMKMRGKHSVENIMAAILASREHGATREAVQKVINTFT---GLPHRIEYVRKVGGVMF 339

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  ++  A+    +         I + G     G+ + + + +         +
Sbjct: 340 YNDSKATNVHAVLRALDTFDE-------NVILIAG-----GKDT-NLNYEPLRTSVKRKV 386

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L G     +   L          T +   L        GDVV++
Sbjct: 387 KTLILVGEAKERINRDLGDFSETFLIGTFEEAVLIAYQKSRIGDVVLL 434


>gi|256845954|ref|ZP_05551412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_36A2]
 gi|256719513|gb|EEU33068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_36A2]
          Length = 432

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 132/353 (37%), Gaps = 49/353 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF   E
Sbjct: 90  KTKIIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIGRSLSE---VLLKEKDLDFISLE 146

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P+I++I  + P H+  +   +E    K  I +   +      N
Sbjct: 147 LSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIEN 202

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD   E    +  A  I       K K AD  ++  K C  E S ++V           
Sbjct: 203 IDDVEIEKRAEQIKAKKISVS----KIKKADIFVKNDKICHGENSIIDVD--------KL 250

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +    IL  D +   + L +  P E    R     N G    I++S
Sbjct: 251 SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLE---HRTELFFNYGKVKFINDS 307

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI              I + G   +  +L+      LAE++   NI  V+
Sbjct: 308 KATNVDSTKFAIQA--------NKNSILICGGYDKGVDLAP-----LAEMIKE-NIKEVY 353

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVV 449
           L G     ++  L +   + Y +      + +++SL D          +V+++
Sbjct: 354 LIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFTKESNEVILL 403


>gi|116074302|ref|ZP_01471564.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
 gi|116069607|gb|EAU75359.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
          Length = 483

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 134/412 (32%), Gaps = 54/412 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     + V    DVL AL           +   IA+ GS GKTTT  +
Sbjct: 82  SAIPEHNPELKAAREQGLTVLHRSDVLAALID---------EQPAIAVAGSHGKTTTSTV 132

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +T  L++  +   A IG      G          +    + E   S    ++F  HL   
Sbjct: 133 ITTLLAAAGEDPTAVIGGVVPCYGSNG----HAGEGRLLVAEADESDGSLVKFAAHL--- 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              VIT +   H  +++ + ++         G      +  N+DD               
Sbjct: 186 --GVITNLELDHTDHYADLNDLIGTLKRFGNGCTH---LLANHDDPILR------EHFQA 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           +  +S   ++  DF         + +  +   +G+ +  +     G H   N    L   
Sbjct: 235 QAWWSVSSAEGVDFAALPVTLEGDHTEADFYERGRLIGRISLPMPGLHNLSNATAALAAC 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +           LS        G+R+    +     LI + Y  +P+ ++A + +   +
Sbjct: 295 RMEGIPFAHLQDGLSQLS---PPGRRFDFRGDWEG-RLIVDDYAHHPSEVRATLDMAQLM 350

Query: 364 -------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLS 407
                   P    R + V          +Q F  D A  LS         +Y      + 
Sbjct: 351 LSSGRSPLPQPPERLLVVF--QPHRYSRTQEFLDDFARALSSADSVILAPIYAAGEAPID 408

Query: 408 GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           G +   L DAL R I    V  + +MD L   +Q      D+V+   +    
Sbjct: 409 GVNSHTLGDALQRLIPDRSVLVANSMDQLTALVQEHSRPQDLVLAMGAGDVN 460


>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|13096498|pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 155 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 208 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 256

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 364 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 409


>gi|84394433|ref|ZP_00993149.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
 gi|84374932|gb|EAP91863.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
          Length = 373

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+    ++L  L +             IA+ G+ GKTTT  ++T   S            
Sbjct: 107 PIVRRAEMLAELMRFR---------HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFV 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
           N  +   +            I E   S    +      ++P ++++T I   H+  +   
Sbjct: 155 NGGLVKSVGTNARLGSSRILIAEADESDASFLH-----LQPMVSIVTNIEADHMDTYGGD 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +     +    L   G   +  DD     L  +      + + ++G S++AD ++  
Sbjct: 210 FETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPQVS----RQVITYGFSEDADIRIEN 265

Query: 263 WKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + Q  +Q    V  +GK ++++  +  G H A N    + + +      +  +KA++   
Sbjct: 266 YVQQGQQGKFTVVRKGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMA--- 322

Query: 322 PKEGRGKRY 330
             EG G+R+
Sbjct: 323 GTEGTGRRF 331


>gi|320354033|ref|YP_004195372.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122535|gb|ADW18081.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 482

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 141/417 (33%), Gaps = 44/417 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +V +       +  L IP   +   LG                 + + G+ GKTTT  +
Sbjct: 85  NVVRITNPEAIELARLRIPYLSMPQALG--------HFFLEGKQSLVVAGTHGKTTTSSL 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL--VR 183
           L   L  I    A  G     +           D  + + E           ++     R
Sbjct: 137 LATTLHRIG---ATPGFMIGGLVEAFGRNANVSDGPYFVVEGDEYDTAFFNKVSKFQHYR 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH  ++T++   H   F+ +  I ++ AE    +   G +  + DD     L      + 
Sbjct: 194 PHCTILTSVEFDHADIFADLAAIKASFAEFIGRIPPQGALVAHLDDPVVAELAK----VA 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
           +  +  +G+    ++++   +     S   V  +G+ +        G H   N L  + +
Sbjct: 250 LCPVIGYGRGSGCEWRVVDLQVRGLASEFTVVHRGQPLGRCRLPMPGVHNCLNALAVIAL 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +S L    +T ++ L+ F   +   +R +        T++D+ +  +P +++  +  L  
Sbjct: 310 LSHLGFAFETIVQGLASFEGVK---RRQQVRGVVRGITVVDD-FAHHPTAVRETLQALRL 365

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV--------------LSLYNISHVWLSG 408
             P    R + V          +  F  D A V              L    IS  + SG
Sbjct: 366 AWPDT--RLVVVFEPRTNSSRRAV-FQQDYATVFGSADQVLIREHVPLETVPISEQFSSG 422

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  D   R I  H     + +   +      GDVVV+  SN  GF  +   LL
Sbjct: 423 QLA---ADLALRGIQAHAYTDTEAILDALARQCQPGDVVVIL-SNG-GFDNIHQRLL 474


>gi|291615176|ref|YP_003525333.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585288|gb|ADE12946.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 464

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 123/364 (33%), Gaps = 31/364 (8%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+  +  L +       R    +IAITG+ GKTT   M+    ++        G+ + 
Sbjct: 93  IAVEGDIELLAQQLATNDYRRNTKVIAITGANGKTTVTSMVGAMCAAAGLDVQVAGNISP 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            +   L        V   + EL    L      T+ +    AV+  +   HL  +  ++ 
Sbjct: 153 AVLDALRARDHQPQVW--VLELSSFQL----ETTYTLDADAAVVLNVTEDHLDRYDSMDS 206

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            A+AKA IF G    G   +N DD     +++ +  L  +   SFG +  A  +     +
Sbjct: 207 YAAAKARIFIG---NGVQVVNRDD-----VRSAAMRLEGRKQTSFGLTPPASDEDWGITR 258

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +W+    Q           G H   N L  L +   L       +          G
Sbjct: 259 EGAATWLMQGAQKILRADELQVTGMHNVANALAALALCRALGLP---IVPLCEALRAFRG 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R       G  T  D+S   N  + +AA+  L + +       + +LG   +  + S
Sbjct: 316 LPHRVEKVAEVGGITYYDDSKGTNVGATEAALKGLGKPA-------VVILGGDGKGQDFS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
                   +     +   V L G     ++ AL      V  +  MD       ++   G
Sbjct: 369 P------LKAAVAQHARAVVLIGRDAPLIERALQGCGKPVLEAHDMDEAVSMAAANAQTG 422

Query: 445 DVVV 448
           D V+
Sbjct: 423 DAVL 426


>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 433

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 117/388 (30%), Gaps = 61/388 (15%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA LVVV+  +  ++     P          L              +IA+TG+ GKTTT
Sbjct: 73  QGADLVVVSPGISLAMVRGLCPAGQTVISELELASWF------ISEPVIAVTGTNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L    +     G+    +   +   +     D  + E+    L          
Sbjct: 127 CMLIQKVLEKAGRRVFTGGNIGTPLSDHVLSGK---RADILVLEVSSFQLQG----CSGF 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            PH+ V+   +  HL +    +E   AK ++F          L  D      L+A+    
Sbjct: 180 TPHVGVLLNFSANHLDHHESEDEYFRAKMQLFARQGPMDLAVLPLD------LRARV--- 230

Query: 243 GIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                        +DF+++      +                     G H   NM   + 
Sbjct: 231 ------------ESDFRIKSNITYFAPTGRF----------HCPGLPGAHNQANMEAAML 268

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                  DV   I   ++         R    L       I++S      +M AA+    
Sbjct: 269 ACGF--VDVSRNIFDQALLEFVPPP-HRQEVFLQDKGVRYINDSKATTLEAMTAALKAFD 325

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                   R +A  G   + G+ S      LA  L       V+L G      +DA   S
Sbjct: 326 S-----PIRLLA--GGRYKGGDFSL-----LAGTLQEKAA-KVYLFGDSREIFEDAWKNS 372

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + +   ++            GD V++
Sbjct: 373 ADMEHFADLEQAAARAVQEAGPGDNVLL 400


>gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 134

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +     +P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEREVQGAA----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSY 143
           EML   L +     A  G  
Sbjct: 115 EMLASILRTRGPVLATRGHL 134


>gi|16128081|ref|NP_414630.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89106971|ref|AP_000751.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157159559|ref|YP_001456877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli HS]
 gi|170021556|ref|YP_001726510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ATCC 8739]
 gi|170079727|ref|YP_001729047.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492751|ref|ZP_03000021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194439413|ref|ZP_03071490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|238899489|ref|YP_002925285.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|253774882|ref|YP_003037713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037503|ref|ZP_04871580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|254160210|ref|YP_003043318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli B str. REL606]
 gi|256025402|ref|ZP_05439267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           sp. 4_1_40B]
 gi|297519210|ref|ZP_06937596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli OP50]
 gi|300931785|ref|ZP_07147085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|300949894|ref|ZP_07163857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300955954|ref|ZP_07168287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|301028571|ref|ZP_07191801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|301646400|ref|ZP_07246282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|307136689|ref|ZP_07496045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli H736]
 gi|312970182|ref|ZP_07784364.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|331640541|ref|ZP_08341689.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331650985|ref|ZP_08352013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|127537|sp|P14900|MURD_ECOLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|40856|emb|CAA38865.1| UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438) [Escherichia coli]
 gi|42060|emb|CAA35933.1| unnamed protein product [Escherichia coli]
 gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|21321969|dbj|BAB96656.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K12 substr. W3110]
 gi|157065239|gb|ABV04494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           HS]
 gi|169756484|gb|ACA79183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ATCC 8739]
 gi|169887562|gb|ACB01269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487950|gb|EDU63053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194421672|gb|EDX37682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|226840609|gb|EEH72611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|238863752|gb|ACR65750.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|242375924|emb|CAQ30605.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BL21(DE3)]
 gi|253325926|gb|ACT30528.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972111|gb|ACT37782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli B str. REL606]
 gi|253976320|gb|ACT41990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli BL21(DE3)]
 gi|260450705|gb|ACX41127.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           DH1]
 gi|284919868|emb|CBG32923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           042]
 gi|299878382|gb|EFI86593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|300317174|gb|EFJ66958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|300450726|gb|EFK14346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300460445|gb|EFK23938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|301075370|gb|EFK90176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|309700299|emb|CBI99587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ETEC H10407]
 gi|310337680|gb|EFQ02791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|315134782|dbj|BAJ41941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli DH1]
 gi|315616133|gb|EFU96752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           3431]
 gi|323939872|gb|EGB36072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E482]
 gi|323960034|gb|EGB55680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H489]
 gi|331040287|gb|EGI12494.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331051439|gb|EGI23488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|332341420|gb|AEE54754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Escherichia
           coli UMNK88]
 gi|333011476|gb|EGK30890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-272]
 gi|333021719|gb|EGK40968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-227]
          Length = 438

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|294506930|ref|YP_003570988.1| UDP-N-acetylmuramate--L-alanine ligase [Salinibacter ruber M8]
 gi|294343258|emb|CBH24036.1| UDP-N-acetylmuramate--L-alanine ligase [Salinibacter ruber M8]
          Length = 491

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 100/299 (33%), Gaps = 32/299 (10%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP  A++T++   H   F   ++   A  E    L + G + L  D      L   + A 
Sbjct: 204 RPQSAIVTSLEFDHADVFVDRDDYRGAFEEFVGRLPRDGQLALCGDAPAVRALADHTRA- 262

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++G + + D +              +++     EV     G H  QN L    +
Sbjct: 263 ---PVRTYGLAPSNDIRAEALTPTGSGLSFTLRMGRHREEVRLPLPGRHNVQNALAAALL 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                    T    L+ F    G  KR +    +    L+ + +  +P ++ A +  L  
Sbjct: 320 ARREGVSPSTIAAGLASF----GGMKRRQQVRGRPNDVLVVDDFAHHPTAVAATVEALR- 374

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD------ 416
            + H + R +A+          S+    + A   +      V+L    V    D      
Sbjct: 375 -AAHPDRRLVAIFEP---RSNTSRRTRFEAAYGTAFDAADRVFLKAPPVRHNDDPDAMLD 430

Query: 417 -------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLL 464
                     R +     E +D +   +  +L  GDV ++  SN   F     RL + L
Sbjct: 431 PTAVAHTIRDRGVPTEVFEDVDAVLPTLTDTLQPGDVALLM-SNG-RFGGLPERLPDAL 487


>gi|317504115|ref|ZP_07962117.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
 gi|315664787|gb|EFV04452.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
          Length = 443

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 116/357 (32%), Gaps = 32/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      +  ITGS GKTTT  ++     +        G+    + + +   
Sbjct: 90  ISEIEFAGRYTQSKMVC-ITGSNGKTTTTSLIYHIFKTAGYDVGLAGNIGKSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 ++ + EL    L  +    +  R +IAV+  I P HL  +    E  A AK  I
Sbjct: 146 -AEDPHEYYVIELSSFQLDNM----YDFRANIAVLLNITPDHLDRYDFKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   +  +     DD   +    K         +S  K + A   +           ++
Sbjct: 201 LQNQTQEDSFIYWNDDPVIQKELEKFETKAFVCPFSEHKEQGAFGYIED-----GNYKLD 255

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L      +I     +   K L  F   E    R    
Sbjct: 256 YPTPFNMKQEELSLTGKHNLHNSLAAGLAANIAGIKSEAIRKGLGDFPGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   I++S   N  +   A+  ++          I +LG     G+   + +  + 
Sbjct: 313 CKVNGVQYINDSKATNVDACWYALDSMTT-------PTILILG-----GKDKGNDYTPIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E++     + V+L G     L D      + +  + +M        +    GD V++
Sbjct: 361 ELVKKKCRAIVYL-GADNKKLHDNFDDLGVIIKDTHSMKDCVEACHTLAQPGDTVLL 416


>gi|299533120|ref|ZP_07046505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
 gi|298718897|gb|EFI59869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
          Length = 634

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 48/368 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIF 165
             ++ ITG+ GKTT   +    L     +    G+    +   L+ AR+  +      + 
Sbjct: 250 PKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLDTLS-ARIDAETLPQAWVL 308

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L + R       P  A +  I   HL    G++  A AKA +F    +   + L
Sbjct: 309 ELSSFQLDDCR----GFEPTAATVLNITQDHLDWHGGMQAYADAKAHVF---GEQALMVL 361

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKS----------KNADFQLRKWKQCS---EQSWM 272
           N +D     +     A+  K   +F ++          +  DF L      +        
Sbjct: 362 NREDPVVMAMLPAPVAVPGKRGKTFQRAHVSFGGDMPRRPGDFGLEVVNGMTWLVRAHEA 421

Query: 273 EVQLQGKSMEVVH----------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +   +GK+ + +H             G H A N L  L + +     +   +        
Sbjct: 422 DETSKGKNADDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAPLLYG---LRE 478

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G   R +     G     D+S   N  +  AA+     +    + R + +LG + +  
Sbjct: 479 YRGEPHRVQPVGRVGDVEYFDDSKGTNVGATVAAL-----MGLGPDHRIVVILGGLGKGQ 533

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
           + +      LA  +S Y +    L G     +++AL    + +  + TM           
Sbjct: 534 DFTP-----LAAPVSRY-VRAAVLIGQDAPLIREALGDTGVTLVDAATMQDAVQQAARLA 587

Query: 442 VDGDVVVV 449
              D V++
Sbjct: 588 HANDAVLL 595


>gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
 gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
          Length = 449

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVQPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + +  +       
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKDGFIVYKGVRI-INTED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFS---GIEHRLQYVGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
           S   N  + + A++  +Q         I  L    + G        +++    + ++  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQT 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       K    +   V  +  ++     +Q  +   DVV++
Sbjct: 379 K-------TKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|254362463|ref|ZP_04978571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica PHL213]
 gi|261493188|ref|ZP_05989717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496956|ref|ZP_05993323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153094055|gb|EDN74967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica PHL213]
 gi|261307392|gb|EEY08728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311151|gb|EEY12325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 433

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 131/346 (37%), Gaps = 43/346 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITGS GK+T   + T             G+    +     L+ +  D D  
Sbjct: 102 REAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPV-----LSLLEGDYDLF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A +  I+  H+  +  I +   AK  I++  E    I
Sbjct: 157 VLELSSFQL----ETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAEN---I 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D+    ++A      +K +  F + +NA++ LR     S    +           
Sbjct: 210 IVNGEDAQTYPIQA------VKKVIRFAE-QNAEYSLRNQMLYSGDDAI-------IQTK 255

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +        +  +KA        G   R++          ++
Sbjct: 256 QMLISGRHNEMNALAAMALAEAANVPREGIVKA---LQIYGGLPHRFQAVATNDGVRWVN 312

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L     +  G    +LG     G+   +   +L  +++  NI  
Sbjct: 313 DSKATNVGSTVAALNGL-----NIAGTLYLLLG-----GDGKAADFSELKPLINKPNI-V 361

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G    AL +   +S+ V   ETM      I+  L  GD+V++
Sbjct: 362 CYCFGQDGAALAELSEQSVLV---ETMQQAIEAIRPQLKKGDMVLL 404


>gi|325266701|ref|ZP_08133377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella denitrificans
           ATCC 33394]
 gi|324981810|gb|EGC17446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella denitrificans
           ATCC 33394]
          Length = 460

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 127/372 (34%), Gaps = 37/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD-VDFGIFEL 167
           ++ + G+ GKTTT  ML   L          IG    +  V    AR+P D   F + E 
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLGAGFLIGGVPQNFSVS---ARLPQDGSPFFVIEA 163

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V  RP  AV+  +   H   F  +  I +    +   +   G +  
Sbjct: 164 DEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIQTQFHHLVRTVPGEGLVVA 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           N      E L+          +  FG     + +  +     E    +V  QG+ +  V 
Sbjct: 224 NG---QAEPLREVIDKGCWTPVEWFG-----NLEGWQIGAADENGGFDVFFQGEKLGRVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L  +         V  A  AL  F   +   +R       G  T+ D+
Sbjct: 276 WDLLGEHNRLNALAVIAAARHAGVPVAQACAALGEFKNVK---RRMEIKGVAGGITVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I+ L Q    G  R +AVL      M  +G +  +         SL  
Sbjct: 333 -FAHHPTAIETTIAGLRQ--KVGGARIVAVLEPRSNTMK-LGTMKAAL------PGSLQA 382

Query: 401 ISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
              V+    G          P    +H     DG    + +    GD V++  SN  GF 
Sbjct: 383 ADAVFCYAGGVDWDVQAALAPLGGKLHVGRDFDGFVDDLAAFAQSGDHVLIM-SNG-GFG 440

Query: 459 RLINLLLEEFPA 470
            + + LL +  A
Sbjct: 441 GIHDKLLAKLAA 452


>gi|302338785|ref|YP_003803991.1| UDP-N-acetylmuramate/alanine ligase [Spirochaeta smaragdinae DSM
           11293]
 gi|301635970|gb|ADK81397.1| UDP-N-acetylmuramate/alanine ligase [Spirochaeta smaragdinae DSM
           11293]
          Length = 486

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 139/431 (32%), Gaps = 37/431 (8%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F    + K A  ++ +           +  FG    +  L+       +        I 
Sbjct: 69  EFRKENLPKDAAGLIYSAAYDPEKHPEILAAFG--QGIPVLSYTQALGSISETVPFAGIA 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTT  +  +   +     A          VP              F   ++   E
Sbjct: 127 GSHGKTTTSALAGVMARAA----ALPAFVLAGSAVPAFGGGSIFFGGDSFF---IAETCE 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P   V+T++   HL  F  I++I SA  E    L K G +   +DD     
Sbjct: 180 YRRHFLSFYPQWIVLTSVEADHLDYFRDIDDIMSAFVEYALRLSKGGVLIYCHDDEGACE 239

Query: 235 LKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +  +  A+     +  +G S   D+++       E++   V              G H+A
Sbjct: 240 VARRLSAIREDVRLVPYGISAPGDYRMTGRSVRDERNRFTVACIDGEFS--LRIPGEHIA 297

Query: 294 QNMLMTLGIVSIL----TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           ++ L    ++  +    + D               G  +R       G    +D+ Y  +
Sbjct: 298 KDALAAFALIREMSDRESFDTYGMESVRRELEGFSGSKRRSEILGEAGGVLFLDD-YGHH 356

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406
           P  ++  ++   +  P    RRI V+  M      +++     AE  +  +   V L   
Sbjct: 357 PTEIRRTLAGFREFYPE---RRI-VIDFMSHTYSRTEALLDQFAE--AFTDADEVILHEI 410

Query: 407 --------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                         +L D + + S  V Y +     F  +  SL  GD+ V   + +   
Sbjct: 411 YASAREKKGNVDGRSLFDRVKQHSSAVRYYDHPLDAFEPLSQSLRQGDLFVTMGAGNN-- 468

Query: 458 YRLINLLLEEF 468
           + L   L   F
Sbjct: 469 WELGKALYNHF 479


>gi|299143955|ref|ZP_07037035.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518440|gb|EFI42179.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 438

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 145/388 (37%), Gaps = 54/388 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + + VA  +     +IAITG+ GKTTT  +    L+S +KTY C+G+    I   L +A 
Sbjct: 87  SDIEVAYGITKCKNLIAITGTNGKTTTTSLTYQILNSDRKTY-CVGNIGKGI---LDIAL 142

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              + D+ + E     L      T+  +P ++VIT +   HL     I    +AK +IF+
Sbjct: 143 EAEEDDYIVIEASSFQL----EYTYDFKPIVSVITNVTSDHLDWHGNISNYKNAKYKIFK 198

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQS 270
              +      NY D   + L         + IY F    +        +   + +  + +
Sbjct: 199 NQNEDDYTIFNYRDQNLKSL------SFDRDIYYFSLEDSGKLGTFVKEGGIYFRSKDST 252

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + +            G H  +N+L +  I   L    +   K++S F   E    R 
Sbjct: 253 EFIMSVND------IKIPGVHNVENVLASTAIAKSLGIKNEVIKKSISNFMGVE---HRI 303

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                       ++S   NP S   AI+ + +         I + G   +  + S+  +I
Sbjct: 304 EFVRELNGVKYYNDSKGTNPDSTIMAINAIEK-------NIILIAGGYDKKADFSEMLNI 356

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L +      +  + L G     L+  + P    ++    +D   +   S    GDVV++
Sbjct: 357 GLGK------VKKLILLGETADILQKISKPLGYEIYMVNDLDKAVMLSNSIASSGDVVLL 410

Query: 450 ---KSS---------NSCGFYRLINLLL 465
               +S             F +L+N L+
Sbjct: 411 SPACASWDMYTSYEKRGEHFKKLVNELI 438


>gi|262037265|ref|ZP_06010747.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
 gi|261748737|gb|EEY36094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
          Length = 455

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 141/399 (35%), Gaps = 48/399 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    +++      +I V    D+            +  K  +I+ TG+ GKTTT   + 
Sbjct: 59  IPWKAELLKKAEEKNIKVISEIDL--------AYKYMDKKIKVISFTGTNGKTTTCTKMY 110

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L          G+          L      +D+ + EL    L         +  +IA
Sbjct: 111 ELLEFAGYNVKLAGNAGYSF---AKLVGDEEPLDYIVLELSSYQLEN----DPQIHSYIA 163

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGI 244
            I  + P HL+ ++ +EE    K +IF+   K     +N DD+ FE L  +    + +  
Sbjct: 164 GIINLTPDHLTRYNSVEEYYITKFDIFQKQNKDDFAVINLDDAEFERLCEREEIQNKIKA 223

Query: 245 KTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI--------GYHMAQ 294
           + +Y   + K   F      +   + +  ++     ++ +V    I        G H  +
Sbjct: 224 EKVYLSTEKKGTVFVFEDNIYIMKNLKDRIDCYADEETEKVAEKLISVKDLSLKGKHNLE 283

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           NML  +    IL    +            +    R      +     I++S   N  S  
Sbjct: 284 NMLFLISGAKILNIPDEKIK---EFLKTTKALEHRLENFFVKENTVFINDSKGTNVESTL 340

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            AI    +         I + G     G+  +  + +L + +    +  V+L G +   L
Sbjct: 341 KAIDSFEK-------PIILICG-----GDDKKISNDELIKKIKE-KVEFVYLIGDNAPLL 387

Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSS--LVDGDVVVV 449
           ++ + +  + +Y   ET++ +  ++ ++       V++ 
Sbjct: 388 EECMDKFGYSNYKNMETVENILNYLNNNFDFTRDAVILF 426


>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
 gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 134/376 (35%), Gaps = 37/376 (9%)

Query: 80  SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            L +P     +++    + ++ +A  L +K   + ITG+ GKTTT  +         K  
Sbjct: 84  PLDLPFIKKVIEENKELIGEVELAYELANKPYFVGITGTNGKTTTTSLTGEIFEKAGKET 143

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             +G+  N +   +  A         + EL    L  I+      +P ++ +  I   H+
Sbjct: 144 YVVGNIGNPVIDAVQAANEGAS---FVTELSSFQLESIKDF----KPSVSAVLNITEDHM 196

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           +    +E    AKA +F   +K     LNYDD     L  K +A     +  F + +   
Sbjct: 197 NRHHTMENYIDAKARVFMNQDKNDFCVLNYDDELTRALAEKCNA----NVVFFSRLE--- 249

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            +L K         +    +  ++         G H  +N +    +  +   D++   +
Sbjct: 250 -KLEKGIYVENGDIIIDIDEKINLMKVCELSLPGGHNLENCMAAAAMAYVSGIDIEVIRE 308

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  F   E    R            +++S   NP S   A+          E   I + 
Sbjct: 309 VLKTFKAVE---HRLEFVKEVEGVKYVNDSKGTNPDSTIKAVQA-------YENPIILIA 358

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGL 433
           G     G    S + +L E ++  N+  + L G     +++A  R     +H  E M   
Sbjct: 359 G-----GYDKGSTYDELLE-IAKKNVKTLVLLGQTADKIEEAARRIGFTDIHRVEDMKEA 412

Query: 434 FLFIQSSLVDGDVVVV 449
                    +GD+V++
Sbjct: 413 VKTCHDIAKEGDIVLL 428


>gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2]
 gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2]
          Length = 472

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 137/386 (35%), Gaps = 41/386 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-------ACIGSYNNHIGVPLTLA 154
             +     II +TG+ GKTTT  ++   L+                 + N  IG    + 
Sbjct: 109 YFVAKDKKIILVTGTHGKTTTSSLMAHVLNQAGLDPSFMIGGIVTDFNSNYRIGGGDYIV 168

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + D   F+ G      + +      P   ++T +   H   F  ++ +    A   
Sbjct: 169 IEGDEYDTAFFDKG---PKFMHYA-----PCFTIMTGVEFDHADIFRDLDHVRQIFAAFV 220

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +GL          DD   + + A ++      I  +G     ++Q    K     S   +
Sbjct: 221 KGLLPESMTIAWGDDMNLKEILAHANN----RIQRYGHGPG-EWQCIDLKVEQGTSVFRI 275

Query: 275 -QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +GK +      +G H   N L  + +   +   VD   +AL  F   +   +R    
Sbjct: 276 KDPEGKILRFAIPLMGDHNVMNALAVIAVARQINIPVDVLARALVSFSGVK---RRQEVR 332

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVL-----GDMCEMGE--LS 385
             +   T++D+ +  +P +++     L  + P   +GR IAV        M ++ +    
Sbjct: 333 GVKRGITVMDD-FAHHPTAVR---ETLRAVRPFYTQGRIIAVFEPRTNSSMRKVFQTIYP 388

Query: 386 QSF-HIDLAEVLSLYNISHVWLSGFHV--LALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           Q+F   DL  +     +  + +         + D   R       +  D L  F+    V
Sbjct: 389 QAFDDADLVCICRPSAMGKIPVEERLSPEKLVADICERGTQALLFDDTDTLVDFLVKMGV 448

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468
            GD++++  SN  GF  + N LLE  
Sbjct: 449 TGDLMLIM-SNG-GFDNIHNRLLERL 472


>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
 gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
          Length = 440

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 132/345 (38%), Gaps = 44/345 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++      +     A  G+          L  +  D +  + E
Sbjct: 107 NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIGF-----AALDLLEQDAELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E      +N
Sbjct: 162 LSSFQL----ETTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAE---VCIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVV 284
            DD        +++    KT+ SFG  +  D+    +   +   +  M +    +     
Sbjct: 215 RDD-------KQTYPDVEKTLKSFGFDQG-DYGCIEKDGIEYLAKDAMSLLAANE----- 261

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ + ++  +  ++D  +          G   R +   +      +++
Sbjct: 262 LGLVGKHNIANSLVAIALLDAVGINLDATLDT---LRTYNGLTHRCQVVADNNGIRWVND 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L       EG+   ++G + +  + S     +L+  L   N+  +
Sbjct: 319 SKATNVASTLAALSGLQ-----LEGKLHLLVGGVGKGADFS-----ELSPALHDLNL-MM 367

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  G          PRS+     ETMD     +  +L  GD+V++
Sbjct: 368 YCFGEDGDQFVSLDPRSL---LCETMDEAVATLYPTLNKGDMVML 409


>gi|323935140|gb|EGB31507.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1520]
          Length = 438

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLEDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLASLRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 440

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 129/343 (37%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++      +     A  G+          L  +  D +  + E
Sbjct: 107 NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIGF-----AALDLLEQDAELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IFE  E      +N
Sbjct: 162 LSSFQL----ETTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAE---VCIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++    KT+ SFG  +  D+   +       +   V L          
Sbjct: 215 RDD-------KQTYPDVEKTLKSFGFDQG-DYGCIEKDGIEYLAKNTVPLL---AANELG 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ + ++     ++D  +          G   R +   +      +++S 
Sbjct: 264 LVGKHNIANSLVAIALLDAAGINLDATLDT---LRTYNGLTHRCQVVADNNGIRWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + S     +L+  L   N+  ++ 
Sbjct: 321 ATNVASTLAALSGL-----QLEGKLHLLVGGVGKGADFS-----ELSPALHDLNL-MMYC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G          PRS+     ETM+     +  +L  GD+V++
Sbjct: 370 FGEDGDQFVSLDPRSL---LCETMNEAIATLYPTLNKGDMVML 409


>gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 358

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 111/360 (30%), Gaps = 44/360 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
               A+ G++G     +++       K T          I   L+  +     DF   E+
Sbjct: 2   GHRAAVMGTIGNGLLGQIVEA-----KNTTGSA----VEIQSSLSTFK-HAGADFTSIEV 51

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R     +    A+ T +   HL     +E  A+AK  +F  L+ T    +N 
Sbjct: 52  SSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINA 108

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQG 278
           DD    + L     A+ +        S NADF        +        + + +  +   
Sbjct: 109 DDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKGADITFESSW 160

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +    IG     N+L+ +  +      ++  +          GR +  +       
Sbjct: 161 GNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYP----N 216

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++   Y   P +++ A+    +   H +G    + G   +     +     +AE  + 
Sbjct: 217 KPIVIVDYAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAE 273

Query: 399 YNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             I           +     +         V           F   S V+ DV+++  K 
Sbjct: 274 KIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKG 333


>gi|52080122|ref|YP_078913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|52785496|ref|YP_091325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|319646103|ref|ZP_08000333.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
 gi|62900504|sp|Q65JY2|MURD_BACLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52003333|gb|AAU23275.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           licheniformis ATCC 14580]
 gi|52347998|gb|AAU40632.1| MurD [Bacillus licheniformis ATCC 14580]
 gi|317391853|gb|EFV72650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
          Length = 451

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 112/348 (32%), Gaps = 39/348 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  K     G+          +A      ++ + 
Sbjct: 111 TDAPFIGITGSNGKTTTTTLVYEMLKADSKKALVAGNIGT---AASEVANQASGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T+  RP I ++  +  AHL      +    AK +++    +T    +
Sbjct: 168 ELSSFQLMG----TYQFRPKIGLLLNVFDAHLDYHHSRKNYELAKQQVYRNQSETDVAVV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L   S A  +         + A  +        E            +E V 
Sbjct: 224 NLDDETVVRLAECSKAEKVYFSVRRTLERGACVKDGAIMFNGE--------PVMPLEDVV 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  L IV           K L+ F   + R +      N+      ++S
Sbjct: 276 -LPGEHNLENILAALCIVKTAGVSDAAVRKVLTSFTGVKHRMQYVATIKNR---LFYNDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
              N  + K A+S           + + +L    + G        H+   +         
Sbjct: 332 KATNILATKKALSAFQ--------KPVILLAGGLDRGNEFDELKPHMSFVKA-------- 375

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V   G      +          V   + ++       S   +GDV+++
Sbjct: 376 VITFGETAPKFEKLAEEMGIQQVKRVDNVEQAATAAFSLSDEGDVILL 423


>gi|301026104|ref|ZP_07189579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
 gi|300395675|gb|EFJ79213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
          Length = 438

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKI 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|307704455|ref|ZP_07641365.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK597]
 gi|307621975|gb|EFO01002.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK597]
          Length = 444

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF   +  + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L   + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLAQKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|293408179|ref|ZP_06652019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
 gi|291472430|gb|EFF14912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
          Length = 438

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|222474750|ref|YP_002563165.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
 gi|222418886|gb|ACM48909.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
          Length = 482

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 143/425 (33%), Gaps = 50/425 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------- 109
           +   + KG  ++  +         + +    + D    L     A +L  + T       
Sbjct: 56  VQALLDKGVHVMPDHRADNVQNADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKAL 115

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                I ++GS GKT+T  M+   +          IG    H G    +       ++ +
Sbjct: 116 GAGRTIVVSGSHGKTSTTGMIASIMEHAGMDPTVFIGGIAFHYGNNYKMGAG----EWAV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G        +   IAV+T +   H   +S +E +    ++    ++  G   
Sbjct: 172 VEGDESDAGFTE-----LPCEIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGASV 226

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEV 283
           +         L          +  ++G  +  D +        + +  ++  L G+ +  
Sbjct: 227 MP------SRLSFTLGNGAKCSKITYGL-EGGDLRASNTTYMGDATVFDIVGLNGEEICC 279

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L    +   +           +      G G+R+    N G  T 
Sbjct: 280 GVRLPVPGRHNVENALAAAAVAKHIGVG---CNYIKAGLEGFMGVGRRFEIIANVGGVTF 336

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  ++A+ +     +    GR I +L          Q F  D    +S ++ 
Sbjct: 337 VDD-YAHHPTEIEASRNAAKLSTTS--GRVIGIL--QPHRFTRVQHFFKDFTSAISKFDY 391

Query: 401 --ISHVWLSGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G  V++  ++L             V ++ T D +   + S    GDVV+  
Sbjct: 392 LILTDVYPAGEEVISGCESLDIVREIKSRGFDQVVHASTPDAITDIVASVAQPGDVVIAM 451

Query: 451 SSNSC 455
            + S 
Sbjct: 452 GAGSI 456


>gi|212551067|ref|YP_002309384.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549305|dbj|BAG83973.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 466

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 140/390 (35%), Gaps = 38/390 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  +   +      I I G+ GKTTT  M+   L     +  C       +        +
Sbjct: 100 RAQLLGEITKNKKGICIAGTHGKTTTSSMIAHLLKQS--SAGCNAFLGGILKNYNNNLLL 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + E       E     H + P +AVIT++   HL  +   +    A       
Sbjct: 158 SDTSDLIVIEA-----DEYDRSFHWLSPFMAVITSVDSDHLDVYGTEKSYKEAFEHFTFL 212

Query: 217 LEKTGTIF----LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + + G +     ++   S  E ++  S++  I  I   GK+K  DF  +  +  SE+   
Sbjct: 213 IRRGGVLLMREGIDIAPSLQEGVQHYSYSGDISKIR--GKNK-PDFYAQNVRINSEEIHF 269

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +       + ++  +        N +  L +  + +   +   +A++ F   +   +R+ 
Sbjct: 270 DFVAPNTVIKDIQLNEPIEINIVNSVAALAVALLNSVTSEELKQAMASFIGVK---RRFD 326

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +      LID+ Y  +P  +K++I  +  + P+   RR+AV+     +   +  F+ +
Sbjct: 327 FHIKTDDLVLIDD-YAHHPQELKSSIKSVRTLYPN---RRLAVIFQ-PHLYSRTNDFYKE 381

Query: 392 LAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
            A+ LSL         Y      +       + D+L  S         D L   +     
Sbjct: 382 FAQSLSLADEVILLPIYPAREKPIPNVSSQIILDSLTISSKQLV--NYDELISSVAK--Q 437

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
             DVV+V  +       LI  L +   A +
Sbjct: 438 KMDVVLVIGAGDIEL--LIEPLKKALLACR 465


>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
 gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
          Length = 492

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 110/347 (31%), Gaps = 20/347 (5%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVD---VDFGI 164
            I A+TG+ GK+T        L          G+             + P D       +
Sbjct: 128 KIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFKFPSDDPPYQAAV 187

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L     L     P + VI  ++P HL     +E     K  +FE ++ +    
Sbjct: 188 LEVSSYQL----ELPGSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSI 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + D F   +  K ++   K           D Q R+       +  E +L        
Sbjct: 244 IPHADEFLRKVAYKYNSGSTKAWLGALPGVQLDSQARRAVVVVPTTKAEARL----YLSG 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H AQN      +   L   VD      ++        +      ++     I++
Sbjct: 300 LKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWIND 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVL-SLYNIS 402
           S   N  +    I  L+          + +LG + + + E        L+++L +   I 
Sbjct: 360 SKATNVDAAYTGIKGLADRKA------VILLGGLAKVLDEDGSLGFKKLSDLLQNHRAIV 413

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                G  +         SI    S TM+      +     GD++++
Sbjct: 414 TFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDIILL 460


>gi|258622767|ref|ZP_05717785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
 gi|258584955|gb|EEW09686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
          Length = 451

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 143/413 (34%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     +IA++G+ GKTTT  M+  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNMRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMVAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D       A     G  +
Sbjct: 181 LVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEAL----ADVFKRGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   +  ++Q  K    ++ S   V L G+ + +V    +G H   N LM +     
Sbjct: 237 ETEFS-GEQGEWQAEKI--TADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    + A +AL +F   +   +R           + D+ +  +P +++  +  L   + 
Sbjct: 294 VGVAPELACEALGLFVNTK---RRLELKGEINGVAVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALP 419
            G+ + IAVL      M  +G   ++         SL++   V+L     +  ++++   
Sbjct: 348 VGDKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAK 400

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
           + +     S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCAQPAQISANMDEFVAMIAKEAKAGDQILVM-SNG-GFEGIHGKLMAALQQK 451


>gi|256832307|ref|YP_003161034.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
 gi|256685838|gb|ACV08731.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
          Length = 492

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 140/407 (34%), Gaps = 45/407 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L++    A L +    IA+ G+ GKTTT  M+ +A  ++    +             
Sbjct: 95  LTVLHRSQALAMLMNDHDGIAVAGAHGKTTTSGMIAVAAQALGMDPSFAVGSTMRTPNGA 154

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                       I E   S    + +     RP I+V+T I P HL ++   +    A  
Sbjct: 155 IPGGHLGHGKILIAEADESDGSFLNY-----RPTISVVTNIEPDHLDHYGSEDAFYRAFD 209

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-- 269
           E  + +   G +    DD+    L  +    G + + ++G+  +AD ++ +         
Sbjct: 210 EFADQVVPHGWLIACADDAGAYALAHRQEQHG-RQVLTYGRHPSADIRVLESHPQHPGIS 268

Query: 270 SWMEVQLQGK-----------------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             M V +                    ++ +     G H A N    L  V +L A    
Sbjct: 269 QVMTVTVPRNLPRTGTRNTTNPENATTTLTIQLAVPGEHNALNAAAALATVMVLGASPQE 328

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A  ALS F    G G+R+      G  T+  + Y  +P  + A +S  S ++    GR +
Sbjct: 329 AAHALSAFM---GTGRRFELRAVVGDVTV-VDDYAHHPTEVAAFLSAASNVAG--TGRVL 382

Query: 373 AVLGDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           A+      +   +++F           D+A V  +Y       +G     + D L     
Sbjct: 383 ALF--QPHLYSRTRTFANEFATALQGADVAIVTDIYGAREQPAAGVTSQLITDNLAPQ-Q 439

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYRLI-NLLLEEF 468
             Y          +      GD++    +        +I + L  +F
Sbjct: 440 GAYIGDRIQAAKHLARIAQPGDLIATIGAGDVTELADVIADELRHKF 486


>gi|165872273|ref|ZP_02216910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227813178|ref|YP_002813187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. CDC 684]
 gi|254754377|ref|ZP_05206412.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Vollum]
 gi|254766036|sp|C3L713|MURD_BACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|164711949|gb|EDR17489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227002721|gb|ACP12464.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSVINADDADVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSKEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|320172821|gb|EFW48053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae CDC 74-1112]
          Length = 438

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|331671607|ref|ZP_08372405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
 gi|331071452|gb|EGI42809.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
          Length = 438

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---I 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLYLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|82775495|ref|YP_401842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           dysenteriae Sd197]
 gi|309787236|ref|ZP_07681848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
 gi|118595691|sp|Q32K04|MURD_SHIDS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81239643|gb|ABB60353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella
           dysenteriae Sd197]
 gi|308924814|gb|EFP70309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
          Length = 438

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G   + L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGVQLAALRPE--VAEKTETMEQAMRLLAPRVQPGDMVLL 410


>gi|229013097|ref|ZP_04170262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
 gi|229168653|ref|ZP_04296375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228614809|gb|EEK71912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228748351|gb|EEL98211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
          Length = 450

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 126/346 (36%), Gaps = 39/346 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + ITGS GKTTT  +    L   +K     G+      V   +A++  + +  + EL
Sbjct: 112 APFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQLAKENEVVVTEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +       +P IA    +  AHL      +E   AKA IF+   +     +N 
Sbjct: 169 SSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEADYSIINA 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--H 285
           DD+    L A S   G K ++S  K       ++            +  +G+ +  V   
Sbjct: 225 DDADVMALSAYSK--GQKVLFSTTKEIEDGAYIKDNA---------LYFKGEKVVKVSDI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + I  +L    +     L  F   + R +      N+ F+   ++S
Sbjct: 274 VLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFY---NDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A+S  +Q         I +L    + G                 ++  + 
Sbjct: 331 KATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------KHVKAIV 376

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L  A  ++    +   ET+D   +   +   DGDV+++
Sbjct: 377 TFGQTAPKLVRAAEKAGLDVIESVETLDDAVVKAYAHSTDGDVILL 422


>gi|223933725|ref|ZP_03625699.1| UDP-N-acetylmuramate/alanine ligase [Streptococcus suis 89/1591]
 gi|302024346|ref|ZP_07249557.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis 05HAS68]
 gi|330833341|ref|YP_004402166.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis ST3]
 gi|223897606|gb|EEF63993.1| UDP-N-acetylmuramate/alanine ligase [Streptococcus suis 89/1591]
 gi|329307564|gb|AEB81980.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis ST3]
          Length = 443

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 105/294 (35%), Gaps = 38/294 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T + + G+ GKT+T  +L   + +I  T   IG             R  
Sbjct: 93  HEFLGEFMKGFTSLGVAGAHGKTSTTGLLAHVMRNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ +E++ +A  +  + +
Sbjct: 144 ANAQYFVFE-----SDEYERHFAPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F   +D     + A +       IY +G  +N DF     K  +  S  +V+  
Sbjct: 199 KKALLVF--GEDEQLRRITANA------PIYYYGFEENNDFVAYDLKPSTSGSQFKVRHG 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + + E      G H   N    +  + I   D+    + L  F   +   +R+   +  
Sbjct: 251 EEELGEFQIPTFGKHNVMNATAVIANLYIAGFDLQLVAEHLKTFGGVK---RRFTEKIVN 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
              T+I + +  +P  + A I    Q            PH   R IA+L +  +
Sbjct: 308 D--TVIIDDFAHHPTEIIATIDAARQKYPSKELVAIFQPHTFTRTIALLDEFAD 359


>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           fischeri ES114]
 gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
           ES114]
          Length = 404

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 129/343 (37%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++      +     A  G+          L  +  D +  + E
Sbjct: 71  NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIGF-----AALDLLEQDAELYVLE 125

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IFE  E      +N
Sbjct: 126 LSSFQL----ETTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAE---VCIVN 178

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +++    KT+ SFG  +  D+   +       +   V L          
Sbjct: 179 RDD-------KQTYPDVEKTLKSFGFDQG-DYGCIEKDGIEYLAKNTVPLL---AANELG 227

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ + ++     ++D  +          G   R +   +      +++S 
Sbjct: 228 LVGKHNIANSLVAIALLDAAGINLDATLDT---LRTYNGLTHRCQVVADNNGIRWVNDSK 284

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + S     +L+  L   N+  ++ 
Sbjct: 285 ATNVASTLAALSGL-----QLEGKLHLLVGGVGKGADFS-----ELSPALHDLNL-MMYC 333

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G          PRS+     ETM+     +  +L  GD+V++
Sbjct: 334 FGEDGDQFVSLDPRSL---LCETMNEAIATLYPTLNKGDMVML 373


>gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
 gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
          Length = 443

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 123/356 (34%), Gaps = 39/356 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  L    R +    IIAITGS GKTTT  ++              G+    +     L 
Sbjct: 99  LADLLRHQRDQ----IIAITGSNGKTTTTSLVGHLCQQSGLDTVVAGNIGTPVLDAW-LQ 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R     D  + EL    L      T  +    A    I+  HL+ +  + + A  K +IF
Sbjct: 154 RQGKSADVWVLELSSFQL----ETTPCLAAAAAACLNISEDHLNRYDDLLDYARTKDQIF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G     T  LN DD F   +         +    F  ++ AD+ L       +Q   + 
Sbjct: 210 NGCR---TQILNADDPFCRAMH-----RPEQQTRYFSLAQAADYWLDPVSGSLKQRDSDF 261

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             Q +         G H   N L  L +   +       ++ +  F   +G   R     
Sbjct: 262 MAQSQ-----IPLQGNHNTANALAALALCEAIGIPRSELVQHIQTF---KGLPHRVEKIG 313

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +     ID+S   N  +  AAI+ L Q       + + + G   +  + +      LA 
Sbjct: 314 AKDGVVYIDDSKGTNVGATVAAIAGLPQ-------KIVLIAGGQGKGQDFAP-----LAS 361

Query: 395 VLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           VL       V+L G        +   R++   + +T+        ++   GD+V++
Sbjct: 362 VLQD-KARAVFLIGVDAPKIAAELAARNVPHQFCDTLPQAVAAAHATAQAGDIVLL 416


>gi|229186153|ref|ZP_04313322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
 gi|228597329|gb|EEK54980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
          Length = 450

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSVINADDADVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|15799772|ref|NP_285784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 EDL933]
 gi|15829346|ref|NP_308119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751402|ref|ZP_02776424.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755696|ref|ZP_02780703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764033|ref|ZP_02789040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771312|ref|ZP_02796319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776932|ref|ZP_02801939.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781973|ref|ZP_02806980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801515|ref|ZP_02826522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|195939304|ref|ZP_03084686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208807723|ref|ZP_03250060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812067|ref|ZP_03253396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818888|ref|ZP_03259208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398858|ref|YP_002268696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325428|ref|ZP_03441512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791225|ref|YP_003076062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. TW14359]
 gi|291280913|ref|YP_003497731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|30316080|sp|Q8X9Y9|MURD_ECO57 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12512791|gb|AAG54392.1|AE005185_9 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359548|dbj|BAB33515.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767768|gb|EDU31612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014554|gb|EDU52676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000408|gb|EDU69394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357000|gb|EDU75419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359908|gb|EDU78327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365875|gb|EDU84291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376376|gb|EDU94792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727524|gb|EDZ77125.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733344|gb|EDZ82031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739011|gb|EDZ86693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160258|gb|ACI37691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209746564|gb|ACI71589.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746566|gb|ACI71590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746568|gb|ACI71591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746570|gb|ACI71592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746572|gb|ACI71593.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|217321649|gb|EEC30073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590625|gb|ACT69986.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760786|gb|ADD54747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190389|gb|EFW65039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320642127|gb|EFX11478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. G5101]
 gi|320647490|gb|EFX16285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. 493-89]
 gi|320652824|gb|EFX21062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. H 2687]
 gi|320658213|gb|EFX25942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663522|gb|EFX30806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320668834|gb|EFX35629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326345192|gb|EGD68935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346954|gb|EGD70688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1044]
          Length = 438

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G   + L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGVQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|119717286|ref|YP_924251.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
 gi|166224710|sp|A1SL79|MURC_NOCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119537947|gb|ABL82564.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
          Length = 446

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 142/419 (33%), Gaps = 60/419 (14%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           G     GHD    A       +VV+T +          V  V   L  L + A  A + +
Sbjct: 60  GARVHLGHD---AAHVHDVDTLVVSTAVREDNPEY---VEAVRQGLRVLPRSAALAAVMA 113

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
              ++A+ G+ GKTTT  +LT+AL +     TYA  G           LA   V+   G 
Sbjct: 114 GRRVVAVAGTHGKTTTTSLLTVALQAAGADPTYAIGG----------DLAATGVNAAEGT 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +L ++   E         P+ AV+T I   HL  +   E  A+A  E  + L   G + 
Sbjct: 164 GDLFVAEADESDGAFLHYSPYAAVVTNIEADHLDQWGTPEAYAAAFDEFADTLAPDGFLV 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD     L  +  A G + +    +   A                   L G    V 
Sbjct: 224 CVADDPGAAALAERHRAAGRRVVTVSARDAGA-------------------LDG----VT 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   + L  L     L        + L+ +   + R +R      +     + +
Sbjct: 261 LWSPGEHYLADALAALAAGVELGYAAADLARGLASYTGTKRRMER----KGEAGGVRVYD 316

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
           SY  +P  +   +     ++    GR   V+     +   ++ F   +   L   +   +
Sbjct: 317 SYAHHPTEIAGDLQAARAVAGS--GR--VVVAFQPHLVSRTRIFGTAMGRALGAADEVVV 372

Query: 402 SHVWLSGFHV------LALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             V+L+            +  A+P  +  V Y    D +   + +    GD+V+   + 
Sbjct: 373 LDVYLAREDPDPEVTGALVAGAVPLPAERVAYVADFDAVAAELVARARPGDLVLTLGAG 431


>gi|289168335|ref|YP_003446604.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus mitis B6]
 gi|288907902|emb|CBJ22742.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus mitis B6]
          Length = 444

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF   +  + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
 gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
          Length = 430

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 119/383 (31%), Gaps = 58/383 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------- 148
             L    RL      I +TG+ GKTTT   +   L+ +    A  G+    I        
Sbjct: 45  QDLINRYRLD-TLKTIGVTGTNGKTTTAAAIYSYLNDLGLKAALQGTRGFFIEDEQLEKK 103

Query: 149 ---VPLTLARM-------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
               P  L  +            + + E+    + + R     ++  + V T I+  HL 
Sbjct: 104 SLTTPPILQTLYHMYTAKQQGATYFVMEVSSHAIAQNRI--EDLQFALKVFTNISQDHLD 161

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               ++   + K+  F      G+  +N DD   +     +         ++   + A +
Sbjct: 162 YHKTMQNYIATKSSFFM---DEGSKLINKDDKHIQYNPKGAR--------TYSVEELATY 210

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKAL 317
           Q+  +          ++   + ++     IG     N+   +  V +L    +    +  
Sbjct: 211 QILAFSMQ-NGISAVLRFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVT 269

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR +            LI   +   P  M+               + +A+ G 
Sbjct: 270 EHFAGVKGRMQIL------NEEPLIIVDFAHTPDGMQKVFESF------PGKKLVAIFGA 317

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSE 428
               G+  +S    +  V S +  + ++L+  +  +         +   +   + V    
Sbjct: 318 ---GGDRDRSKRALMGNVASRF-CTKIYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIV 373

Query: 429 TMDGLFLFIQSSLVDGDVVVVKS 451
                      SL   +++++  
Sbjct: 374 DRKEAVEKAFHSLQKDEILLILG 396


>gi|308235553|ref|ZP_07666290.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14018]
 gi|311114359|ref|YP_003985580.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14019]
 gi|310945853|gb|ADP38557.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14019]
          Length = 503

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 129/383 (33%), Gaps = 57/383 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK------TYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           + + G+ GKTTT  +L   L    K      +YA  GS     G  +           GI
Sbjct: 124 VTVAGAHGKTTTSSLLAHILRVCGKGDLADPSYAIGGSIQAQDGGEID----GGHAGSGI 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTI 223
             +  +   +  F      P+IA++T +   HL ++   +   SA    +   L   G I
Sbjct: 180 VMVAEADESDGSF--EKYNPYIAIVTNVEADHLDHYGNAQNYRSAFVEHLSHAL---GHI 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------------ADFQLRKWKQCSE 268
            +  DD     +        +K    +  +K+               A  +    K  S 
Sbjct: 235 VICADDDGARAVLDALSDDSLKKTIVYTSNKDNVSLLNDRVKSFVKFAFIEHESEKTGSG 294

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                ++  G  ++V     G H A+N    +    +L      A    S F    G  +
Sbjct: 295 SESFVIEFNGDFIDVNLIIPGLHNARNACAAIIAAMLLGMSPKDAADGASSF---RGASR 351

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+         T++D+ Y  +P  + A +    +  P+   R   VL     +   ++SF
Sbjct: 352 RFDIRGCVNGVTVVDD-YAHHPTEIDALLRAARRRYPNASIR---VLFQ-PHLFSRTRSF 406

Query: 389 HIDLAEVLSLYNISHVWLSG-------------FHVLALKDALPRSIHVHYSETMDGL-- 433
             + A  LSL     V ++G              H   + D   +       E ++ +  
Sbjct: 407 AHEFASALSL--ADDVIVTGIFPAREKQEDFPDIHASTIVDVARKDDITSNIEAVEDMRE 464

Query: 434 -FLFIQSSLVDGDVVVVKSSNSC 455
             L + S   +GDV+    + S 
Sbjct: 465 GALKLASRAKNGDVLFTVGAGSI 487


>gi|56461361|ref|YP_156642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
 gi|56180371|gb|AAV83093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
          Length = 433

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 147/406 (36%), Gaps = 47/406 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G        D V ++    IP               +   + ++  ++A+ G+
Sbjct: 55  IGNALSRG-------NDEVEAVLRERIPYVS--------GAQWLHDNVLTQRWVLAVAGT 99

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     +     ++    D +F + E          
Sbjct: 100 HGKTTTASMLAWILEDNGFD---PGFMIGGVPGNFPVSARLTDSNFFVIEADEYDTAFFD 156

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P   ++  +   H   F  +  I    A +   +  TG + L   D   + 
Sbjct: 157 KRSKFVHYAPDTLILNNLEFDHADIFPDLAAIQRQFAHLLRVVPDTGQVILPAGDKALDE 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMA 293
           +  +     +         +  D+Q +  K  ++ +  EV  Q K +  V  + +G H  
Sbjct: 217 VLGQGCWSPVVR-----MGEQGDWQTKLLK--TDGTEFEVHYQSKCIAQVSWNVLGTHNV 269

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +M +   + +    + + +AL+ F   +   +R           + D+ +  +P+++
Sbjct: 270 NNAMMAIIAAAHVGIKAEQSAQALNRFRSPK---RRMELLGEHRGVKVFDD-FAHHPSAI 325

Query: 354 KAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           K  +S L Q  P  + R IAVL      M  MG  S +       V SL +  +V++   
Sbjct: 326 KTTVSGLRQHQP--DSRIIAVLEPRSNTMK-MGVHSDTL------VQSLEDADNVFVLQP 376

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             L       +    H  E+ D L   + + +  GD V++  SN  
Sbjct: 377 EGLK-WQLAEKMPKAHVFESTDDLLAGLLAEVRAGDAVLIM-SNGS 420


>gi|319778584|ref|YP_004129497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
 gi|317108608|gb|ADU91354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
          Length = 443

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 129/364 (35%), Gaps = 44/364 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            +IA++G+ GKTT   MLT  L S        IG       +    AR      F + E 
Sbjct: 92  HVIAVSGTHGKTTCTSMLTHILQSAGLNPNFLIGGIAKDFNIS---ARFNSQSKFFVIEA 148

Query: 168 GMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V  H   A+I  I   H   F  ++ I +        L + GT+ +
Sbjct: 149 DEYDTAFFDKRSKFVHYHANTAIINNIEYDHADIFPDLKAIENQFHNFVRILPRNGTLIV 208

Query: 226 NYDDSFFELLKAK-----SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +D   + + ++        +G    +S+                      ++   G++
Sbjct: 209 PKNDETIDRILSRGLYCQKIEIGDGGTWSY------------VNISDSTQNFDILKDGQN 256

Query: 281 MEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +     G H  +N L  +    ++      AI+AL+ F    G  +R     N    
Sbjct: 257 VGHINWEMTGLHNIKNALSCIAAADVIGVKPALAIEALNNFS---GIKRRMEVVGNPNNI 313

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--S 397
           T+ D+ +  +P+++   I  L      G+ R IAV     E    +      +A+ L  +
Sbjct: 314 TIYDD-FAHHPSAIATTIDGLR--KKVGDPRIIAVF----EPRSNTMKL-GTMAKFLPEA 365

Query: 398 LYNISHVWLSGF-HVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L N   +++ G  H         ++      +VH    +D L   I   +  GD VV+  
Sbjct: 366 LKNADQIYIYGELHGKHALGWTPEEIFGSQTNVHIYHEVDKLKDAILEEVKSGDHVVIM- 424

Query: 452 SNSC 455
           SN  
Sbjct: 425 SNGS 428


>gi|160936902|ref|ZP_02084266.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440092|gb|EDP17839.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
          Length = 449

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 121/342 (35%), Gaps = 41/342 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +  II ITG+ GK+T   +L   L         +G+    I     +  +  D    +F
Sbjct: 103 FRDQIIGITGTKGKSTVTTLLYHLLKQAGMDALLVGNIG--IPALDHMEEVKPDTRI-VF 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +      V PHI ++  I   HL ++  +E+   AK  IF+       +  
Sbjct: 160 ELSCHQLEYM-----TVSPHIGILVNIHEEHLDHYGTMEKYVEAKHHIFKNQGPDDILIC 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---E 282
           N      + L  +        +   G   +   +     Q  + +W  V  +GKS     
Sbjct: 215 N-----VQCLPEEGTCPSG--LIRAGMDGSG--KELDVVQEQDGTW--VHFRGKSFCIPT 263

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   ++ +  G+ SIL  D     + L  + P      R +    +      
Sbjct: 264 DEIKLLGQHNYFDIGVAYGVCSILGMDDQVFARGLKTYEPLP---HRLQYIGEREGVKYY 320

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S +    +   A+  L             ++G M    +     + +L E LS   + 
Sbjct: 321 DDSISTICDTTIQALKTLKDTD-------TVLIGGMDRGID-----YRELIEYLSDCQVP 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           H+ L    + A    + + IH +Y E  +   L +   L DG
Sbjct: 369 HIIL----MEATGKRIYQEIHKYYPEFKNRARLILAEHLEDG 406


>gi|294828013|ref|NP_712232.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385859|gb|AAN49250.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 488

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 145/433 (33%), Gaps = 69/433 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + + N  +V       IP+    ++L          ++ S+   I+I GS GKTTT  M
Sbjct: 74  AIRLDNHPLVKKFKEKGIPLIHRSELL---------HKIMSEKKQISIAGSHGKTTTTAM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     + + +      +        +    ++G+FE   S   +  F  H     
Sbjct: 125 TAFLLEKCGMSPSVM--VGGEVAFLGGKGGVWGKGEWGVFE---SDESDGTFNNHYAE-- 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHA 241
           + ++T +   HL  +   E + +A     EG   +  + LN DD       +L+   S  
Sbjct: 178 MRILTNVDEDHLDYYQTRENLLNAFVRYMEG--ASRRLILNLDDIGIRDSIKLIHDHSKI 235

Query: 242 LGIKTI-----YSFGKSKNA-----DFQLRKWKQCSEQSWME------------------ 273
           LG         ++ G S+N+     D +        + S +                   
Sbjct: 236 LGFSKYKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPDKIVYYTIQSGIL 295

Query: 274 -VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               Q K         G H  +N L  +         +   +   S      G  +R   
Sbjct: 296 YFYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLV---SKISEYSGVNRRLEY 352

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             ++    + D+ Y  +P  +KA I  + ++     GR + +          +Q+ + + 
Sbjct: 353 LGSKNGIEVYDD-YGHHPTEIKAVIQSMEELKKE--GRAVILF--QPHRYTRTQNLYKEF 407

Query: 393 AEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           AE L          +Y+     + G     + D +     +   E  +G+F  ++S L  
Sbjct: 408 AESLDSGEIVFLLPIYSAGEDPIYGVKAELISDFMKFPAKILPKEISEGIFT-LKSFLKP 466

Query: 444 GDVVVVKSSNSCG 456
           GD +V   + +  
Sbjct: 467 GDKLVTLGAGNVR 479


>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 453

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 131/361 (36%), Gaps = 37/361 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A R      I+AITG+ GKTTT  ++   L  +       G+        +   
Sbjct: 97  IGEIELAYRFCRSKNIVAITGTNGKTTTTTLVGEILKKVFDNVIVCGNIGFPFIDYV--- 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D    + E+    L  I++     +P +  I  I P HL+    ++    AK  IF
Sbjct: 154 ESSTDDTIFVIEISSFQLETIKYF----KPMVGCILNITPDHLNRHMNMDNYIRAKMRIF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E +++ G   LN D+S    L   +      T+ +F K+++      +     +  ++  
Sbjct: 210 ENIDQEGYSVLNMDNSITRDLIGCAKG----TVITFSKNESD----TQNSVFVDGDFIYR 261

Query: 275 QLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              GK  +V+        G H  +N L  +G V           K L  F   E    R 
Sbjct: 262 NFLGKVEKVMRKDDIFMPGEHNLENTLAAIGCVLPFEIQPSIIEKTLKEFKGVE---HRI 318

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                       ++S   N  +   A++             I + G      +  +SF  
Sbjct: 319 EFVREINGVRFYNDSKGTNTDASSKALNSFEV-------PIILIAGG----YDKGESF-E 366

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             A+++S   +  V+L G     + D L +   ++  + E +            +GDVV+
Sbjct: 367 KFAKLISQ-KVKKVFLLGQTKQKIADQLQKIGYLNFEFVEDLKEAVKKSFEIAKEGDVVL 425

Query: 449 V 449
           +
Sbjct: 426 L 426


>gi|282859040|ref|ZP_06268176.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
 gi|282588208|gb|EFB93377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
          Length = 443

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 123/357 (34%), Gaps = 32/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      I  ITGS GKTTT  ++              G+  N + + +   
Sbjct: 90  ISEIEFAGRYTHSKMIC-ITGSNGKTTTTSLIFHIFKDAGYDVGLAGNIGNSLALQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                 D+ I EL    L ++    +  R +IA++  I P HL  +    E  A AK  I
Sbjct: 146 -AEDPHDYYIIELSSFQLDDM----YNFRANIAILLNITPDHLDRYEYKFENYADAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   K  +     DD   +    K     ++  +S  K K +   + + +   EQ    
Sbjct: 201 IQNQTKEDSFIYWNDDPVIKKELEKFDVKAVRYPFSELKEKGSIGYIEQGQYTIEQ---- 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +      G H   N L      +I     +   K+LS F   E    R    
Sbjct: 257 -PTPFNMEQEDLSLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFPGVE---HRLEKV 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   I++S   N  +   A+  ++          + ++G     G+   + +  + 
Sbjct: 313 CKVAGVQYINDSKATNVDACWYALESMTT-------PTVLIIG-----GKDKGNDYDAIK 360

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +++     + V+L G     L D      I V  + +M        +    GD V++
Sbjct: 361 DLVKQKCRAVVYL-GADNQKLHDNFDHLGITVRDTHSMKDCVAACAALAKPGDTVLL 416


>gi|150003962|ref|YP_001298706.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides vulgatus ATCC
           8482]
 gi|294777997|ref|ZP_06743431.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides vulgatus PC510]
 gi|189028973|sp|A6L070|MURC_BACV8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149932386|gb|ABR39084.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides vulgatus ATCC
           8482]
 gi|294448055|gb|EFG16621.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides vulgatus PC510]
          Length = 458

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 135/407 (33%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V          +  ++      +  V   L      + + G+
Sbjct: 63  ITDAFRDPATTLVVYTPAVPDTHKEF--TYFRENGFEIHKRSQVLGMLTHAGKGLCVAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +    ++ + E       E  
Sbjct: 121 HGKTTTSTMTAHLLHQS--HVGCNAFLGGISKNYGTNLLLSDSSEYMVIEA-----DEFD 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+I+VIT   P HL  +   E    +  +    ++  G + +       + ++
Sbjct: 174 RSFHWLSPYISVITATDPDHLDIYGTKEAYLESFRKYTSLIQPGGALIV------RKGIE 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +        +Y++ + +  DF     +  + + + + V   G    +          +N
Sbjct: 228 LQPALQNGVKLYTYSQEEG-DFHAENIRIGNGEIFFDYVSPLGNIPNIQLGVPVSINIEN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 287 GVAAMALAQMSGLTDEEIKRGMASFRGVD---RRFDFKIKNDKVVFLSD-YAHHPSEIKQ 342

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +I  +  +  + + +  AV      +   ++ F+ D A+         ++ +Y      +
Sbjct: 343 SILSMRAL--YRDKKLTAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 398

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +         +L  GD+
Sbjct: 399 PGVTSKLIYDHLRPGIEKSMCK-KEEILDVLSKKDIEVLITLGAGDI 444


>gi|45657726|ref|YP_001812.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600966|gb|AAS70449.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 490

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 145/433 (33%), Gaps = 69/433 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + + N  +V       IP+    ++L          ++ S+   I+I GS GKTTT  M
Sbjct: 76  AIRLDNHPLVKKFKEKGIPLIHRSELL---------HKIMSEKKQISIAGSHGKTTTTAM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     + + +      +        +    ++G+FE   S   +  F  H     
Sbjct: 127 TAFLLEKCGMSPSVM--VGGEVAFLGGKGGVWGKGEWGVFE---SDESDGTFNNHYAE-- 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHA 241
           + ++T +   HL  +   E + +A     EG   +  + LN DD       +L+   S  
Sbjct: 180 MRILTNVDEDHLDYYQTRENLLNAFVRYMEG--ASRRLILNLDDIGIRDSIKLIHDHSKI 237

Query: 242 LGIKTI-----YSFGKSKNA-----DFQLRKWKQCSEQSWME------------------ 273
           LG         ++ G S+N+     D +        + S +                   
Sbjct: 238 LGFSKYKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPDKIVYYTIQSGIL 297

Query: 274 -VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               Q K         G H  +N L  +         +   +   S      G  +R   
Sbjct: 298 YFYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLV---SKISEYSGVNRRLEY 354

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             ++    + D+ Y  +P  +KA I  + ++     GR + +          +Q+ + + 
Sbjct: 355 LGSKNGIEVYDD-YGHHPTEIKAVIQSMEELKKE--GRAVILF--QPHRYTRTQNLYKEF 409

Query: 393 AEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           AE L          +Y+     + G     + D +     +   E  +G+F  ++S L  
Sbjct: 410 AESLDSGEIVFLLPIYSAGEDPIYGVKAELISDFMKFPAKILPKEISEGIFT-LKSFLKP 468

Query: 444 GDVVVVKSSNSCG 456
           GD +V   + +  
Sbjct: 469 GDKLVTLGAGNVR 481


>gi|229092960|ref|ZP_04224092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
 gi|228690414|gb|EEL44199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
          Length = 450

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSVINADDADVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|157369004|ref|YP_001476993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia
           proteamaculans 568]
 gi|157320768|gb|ABV39865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia
           proteamaculans 568]
          Length = 439

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L R   +    
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWAVGVGGNIGLP---ALSLLR--QECQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E  E    
Sbjct: 156 VLELSSFQL----ETTFSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAE---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        K   SFG    AD       +   ++W+ V+ +     
Sbjct: 209 CVVNADDALTMPVRG-----ADKRCISFG----ADVGDYHLNRQLGETWLRVRGEKILNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     +++KAL+ F    G   R++ A        I
Sbjct: 260 REMKLTGRHNYTNALAALALADAVNIPRASSLKALTTFT---GLAHRFQLAWEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       +G    +LG   +  + S      LA+ L   N+ 
Sbjct: 317 NDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LAQYLQGDNV- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   +   D+V++
Sbjct: 366 RLYCFGRDGEQLAQLRPE--VATLTETMEQAMQAIAGRVQSDDMVLL 410


>gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 441

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 131/422 (31%), Gaps = 66/422 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F + A     G+ +    + A      IP+ G  D+           R   +  ++ ITG
Sbjct: 72  FGISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRRCPVVGITG 129

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   L               +IG+PL  A    D    + EL    +   
Sbjct: 130 TNGKSTTTALIHHILKEAG----LPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID-- 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++
Sbjct: 184 --LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVI 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +S A  +                       + +W  +Q             G H AQN
Sbjct: 242 AKQSAAHLV------------TVHADNISAEDQINWPNLQ-------------GPHNAQN 276

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            ++ + +  IL    D             G   R +    +     ID+S   N  +   
Sbjct: 277 AVLAMAVAHILGISDDVI---SKALVSYAGLPHRMQKIGERRGVLFIDDSKATNAMATAP 333

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++    I          +LG + +  +L               +I   +  G       
Sbjct: 334 ALAAFPAIHW--------ILGGVPKTADLDPC-------KAFYNHIRQAYTIGQAGPDYA 378

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
             L    ++V    T++             +VV++    +S             F +++ 
Sbjct: 379 QLLREAGVNVVECGTLEKAVRLAAEEAQPDEVVMLTPACASFDQFSDYEARGQAFRKIVE 438

Query: 463 LL 464
            L
Sbjct: 439 AL 440


>gi|256020074|ref|ZP_05433939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella sp.
           D9]
 gi|300821907|ref|ZP_07102051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|309796078|ref|ZP_07690490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331666325|ref|ZP_08367206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331680662|ref|ZP_08381321.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332281224|ref|ZP_08393637.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
 gi|300525507|gb|EFK46576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|308120320|gb|EFO57582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331066536|gb|EGI38413.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331072125|gb|EGI43461.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332103576|gb|EGJ06922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
          Length = 438

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|251781817|ref|YP_002996119.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390446|dbj|BAH80905.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 443

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 124/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 107 GVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 152

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D  
Sbjct: 153 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQE 210

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + + A +       IY +G  +  DF      + +  S   V+  G+ +   H    G 
Sbjct: 211 LKKITANA------PIYYYGFEEGNDFVASDIARTTHGSDFTVKHDGQIIGRFHVPAYGR 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D++   + L  F   + R             T+I + +  +P
Sbjct: 265 HNILNATAVIANLFVAGIDMELVAEHLKTFSGVKRRFTEKLI-----NETIIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFALALNEADSVY-----LAQIYG 374

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   L +   +   + +  L         D  V V   +     Y 
Sbjct: 375 SAREVDKGEVKVEDLAAKLTKPAKIVTVDNVSPLLDH------DNAVYVFMGAGDIQLYE 428


>gi|222097358|ref|YP_002531415.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Bacillus
           cereus Q1]
 gi|254766038|sp|B9IVY9|MURD_BACCQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221241416|gb|ACM14126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Q1]
 gi|324327812|gb|ADY23072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 450

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKVL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVGDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q +         +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|257438505|ref|ZP_05614260.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199084|gb|EEU97368.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium prausnitzii
           A2-165]
          Length = 476

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 145/400 (36%), Gaps = 50/400 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +  S  IP      +LG +++L            I ++G+ GKTTT  M
Sbjct: 98  AAIAKDNVELNAAASYGIPTVERSVLLGYVSRLY--------KDSICVSGTHGKTTTTSM 149

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +T AL    +   A IG     IG      +     D  + E       E       + P
Sbjct: 150 ITTALELAGRDPSAVIGGKLPLIGGYGKAGKG----DDIVIEA-----CEFSETFLKLTP 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +++V+  I   HL  +  + E+  A       L     IF N DD     +         
Sbjct: 201 YMSVVLNIDNDHLDYYGSMGELKFAFKRF--ALMTHFMIFANADDKNTMDVMYTL----D 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHGIGYHMAQNMLMTL 300
           + + +F     AD++    ++     + E  L+     +   +     G H   N L   
Sbjct: 255 RRVRTFAIDNAADYRAVNVQEYKPG-FFEFDLKEWDTNELGHIRLAVPGRHNIYNALAMC 313

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   +   V+    A   F   +G G+R+     +    ++ + Y  +P  ++A ++  
Sbjct: 314 AVCRSVGLTVEECANAALNF---KGAGRRFEV-YGECNGAVVVDDYAHHPTEIRATLNTA 369

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFH--------V 411
            ++  +   R IAV          ++    D  +V  + +I+ +  + G           
Sbjct: 370 KELGYN---RVIAV--HQPFTYSRTKMLFNDFVDVFKIPDITVITPIMGSREPNDPTITS 424

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             L   +P S+ V   ++++    +++ +  +GD+V+   
Sbjct: 425 AKLAAQIPNSVLV---DSLEAAADWVKQNAREGDLVITLG 461


>gi|20094192|ref|NP_614039.1| UDP-N-acetylmuramate-alanine ligase [Methanopyrus kandleri AV19]
 gi|19887211|gb|AAM01969.1| UDP-N-acetylmuramate-alanine ligase [Methanopyrus kandleri AV19]
          Length = 512

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 129/402 (32%), Gaps = 73/402 (18%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDV 160
           L     +I + G+ GKTTT  M+      +      +   G   N   +P   AR+P DV
Sbjct: 105 LPPTRPVIGVGGTNGKTTTVAMIRHVCEQLGLEAPHHGLPGMQGNVGLLPPLQARLPGDV 164

Query: 161 DFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              + E+      GEI     L +     +T I P HL+        A  +AE+   LE 
Sbjct: 165 --SVLEIATFGKRGEILEAAELSQVECVCVTNITPDHLNEAGDFLTYARCEAEL---LEP 219

Query: 220 TGT--IFLNYDDSFFELLKAKSHALGIKTIYSFG-------------------------- 251
                  LN  D             G   I  +G                          
Sbjct: 220 DTIELAVLNAQDPLVVGAPEVVDFNGD--IVYYGLDVEPFDTSEKECWCGGHVEVHEILP 277

Query: 252 ------------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                       +S   D+           S   +       EV    +G H A N L  
Sbjct: 278 WVGPFKCRECGLRSPEPDYLATDVDL----SGFRLICPDGEYEVRLPVMGLHNAYNALAA 333

Query: 300 LGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           + + S  L  DV+  ++AL  F   EG   R     + G   +I + Y  NPA + A + 
Sbjct: 334 IAVCSEFLGLDVEDVVEALQSFEGVEG---RLEVLWDDGERVVILD-YGHNPAGVDATLR 389

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE--VLSLYNISHV---WLSGF 409
            + +   + E R  AV+    E+G            DLA+  V++ Y    V     +  
Sbjct: 390 CVKE--AYRERRVCAVIAVASELGPEGDEEILRRAADLADLVVVASYAAYEVMDRVDADN 447

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVV 449
            + A     P         + + +   ++ +L      VV+ 
Sbjct: 448 VIAAESATKPFEKKGTLGASREQVLDGLKEALRSDCEVVVLF 489


>gi|187732828|ref|YP_001878898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii CDC 3083-94]
 gi|187429820|gb|ACD09094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           CDC 3083-94]
          Length = 438

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|325980953|ref|YP_004293355.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
 gi|325530472|gb|ADZ25193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
          Length = 471

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 96/408 (23%), Positives = 153/408 (37%), Gaps = 51/408 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DG + I  A+  G   V V    V     L IPV G  D++  L   A+      K  ++
Sbjct: 66  DGIEMI--AISPG---VPVADPFVQQAIRLGIPVIG--DLV--LFSWALEQNKLQKPKVL 116

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMS 170
           AITGS GKTT   M+   L       A  G+    I   L       +     + E    
Sbjct: 117 AITGSNGKTTVTSMVGAMLRKSGWDVAVAGNIGPAILNVLMEQVDAGNWPQAWVLETSSF 176

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNY 227
            L      TH +   +A +  ++  HL  ++ +++  +AK +IF  L + G++    LN 
Sbjct: 177 QL----ETTHNLNADVATVLNVSEDHLDRYTCMQDYIAAKLKIF--LRENGSVCTQILNR 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +DS    +     AL      +FG      +ADF     ++  +  W+            
Sbjct: 231 NDSGISEM-----ALADGKQITFGWDIPPTDADF---GIQRDGDDLWLMEGPHRLMKTSE 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N L  L +   L   ++  + AL  F    G   R          T  D+
Sbjct: 283 LVVNGLHNAVNALAALAMCRALDIPMNPLVSALREF---RGLPHRMEKVAAFNGVTFFDD 339

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +  AA++ + Q         I + G   +  + S      +AE     N   V
Sbjct: 340 SKSTNVGATIAALNGMKQ-------NVILIAGGDGKGQDFSH-LRQTVAE-----NTRAV 386

Query: 405 WLSGFHVLALKDALPR-SIHVHYSETMDGLFL--FIQSSLVDGDVVVV 449
            L G     + D L    + VH++ TM+      F+ +    GDVV++
Sbjct: 387 VLIGRDAGIIADELKDCGVPVHFATTMEEAMQKSFLLA--QAGDVVLL 432


>gi|219682144|ref|YP_002468528.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254765988|sp|B8D7B8|MURC_BUCAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219621877|gb|ACL30033.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 484

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 156/425 (36%), Gaps = 60/425 (14%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+      +  +  N   + +    +IP+    +++  L               IA++
Sbjct: 79  DFIIK-----SSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKG---------IAVS 124

Query: 115 GSVGKTTTKEMLTIAL--SSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           G+ GKTTT  M+      S +  T      I S N++  +  +         + I E   
Sbjct: 125 GTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSS--------SYFITEADE 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      + P+I ++T I   H+ ++    +++        + +   GT  +  D
Sbjct: 177 SDASFL-----YLNPNIIIVTNIESDHIDHYDNSFKKLKQTFLTFLKKITLYGTAIVCID 231

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           ++    +           I ++G +KNAD ++  +KQ +      + L+  K + ++ + 
Sbjct: 232 NNAICDILTNLKC----KIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNI 287

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTL 341
            G H A N    + +      + D  I +L  F     R +        +    +    L
Sbjct: 288 PGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRANCML 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--- 398
           ID+ Y  +P  +   I  +    P+     I +          + + + D  + LS    
Sbjct: 348 IDD-YGHHPTELSETIKTIRISWPNKN--LIMIF--QPHRYTRTYNLYHDFVQTLSQVDV 402

Query: 399 ------YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 Y+ +  ++ G   L+L + + +    +V      + +   +  +L   D+++++
Sbjct: 403 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 462

Query: 451 SSNSC 455
            + + 
Sbjct: 463 GAGNI 467


>gi|308094624|ref|ZP_07662988.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AN-5034]
 gi|308093175|gb|EFO42870.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AN-5034]
          Length = 317

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 30/260 (11%)

Query: 51  YDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + GH      V+K + +VV          V +   L IP+    ++L  L +        
Sbjct: 71  FIGHQ--ASNVEKASVVVVSTAINEENPEVMAARELRIPIVRRAEMLAELMRFR------ 122

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T   S            N  +                I 
Sbjct: 123 ---HGIAVAGTHGKTTTTALVTQIYSEAGLD---PTFVNGGLVKSAGTNARLGSSRILIA 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++++T I   H+  +    E +     +    L   G   
Sbjct: 177 EADESDASFLH-----LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAI 231

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +  DD     L  +      + + ++G S +AD ++  + Q  +Q    V  +G+ ++++
Sbjct: 232 VCIDDPVIRELIPRIS----RQVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDI 287

Query: 284 VHHGIGYHMAQNMLMTLGIV 303
             +  G H A N    + + 
Sbjct: 288 TLNIPGRHNALNASAAIAVA 307


>gi|184155796|ref|YP_001844136.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum IFO
           3956]
 gi|227515610|ref|ZP_03945659.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum
           ATCC 14931]
 gi|260663487|ref|ZP_05864377.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum
           28-3-CHN]
 gi|229620037|sp|B2GDC4|MURC_LACF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183227140|dbj|BAG27656.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum IFO
           3956]
 gi|227086040|gb|EEI21352.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum
           ATCC 14931]
 gi|260552028|gb|EEX25081.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum
           28-3-CHN]
          Length = 437

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 123/362 (33%), Gaps = 54/362 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I + G+ GKT+T  +L   LS++++T   IG                 D  F +FE
Sbjct: 102 NHTSIGVAGAHGKTSTTGLLAHVLSNVEQTSYLIGDGVGVGV---------ADARFFVFE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   + +      P  A++T +   H   F  + ++  +       ++K   +F  
Sbjct: 153 ADEYRDHFLAY-----HPDYAIMTNVDFDHPDYFKDLADVKDSFETYGRQVKKG--LFAW 205

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D     L           +Y +G + + DF+     +  + S  +   + + +     
Sbjct: 206 GEDKSLRDLNVDV------PVYYYGTAPDDDFRAANIVRTPDGSTYDAYYKDQKLGTFTI 259

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N L  + +  +   D++     L+ F   + R      A  +     + + 
Sbjct: 260 HLYGEHSVLNSLAVVAVAYMEKIDLEKIKAELANFSGVKRRFAEEDIADMK-----VIDD 314

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P+ +KA I    Q  P  E   + V            ++  +  + LS      V+
Sbjct: 315 YAHHPSEIKATIDAARQKFPQKE--LVVVF--QPHTYSRLAAYLTEFGQSLSR--ADKVF 368

Query: 406 ---LSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSN 453
              + G             L+D +P S      E +D     I   L   D VVV   + 
Sbjct: 369 VTPIFGSIREQNGSVSAKDLEDLIPGS------EDIDQA--SITKLLAYHDAVVVFMGAG 420

Query: 454 SC 455
             
Sbjct: 421 DI 422


>gi|114321344|ref|YP_743027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227738|gb|ABI57537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 449

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 87/432 (20%), Positives = 141/432 (32%), Gaps = 61/432 (14%)

Query: 31  SIDSRSIAPQEAF-------FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS- 82
             DSR   P++A          ++   +D       A+  GAG ++V+  +     +L  
Sbjct: 36  VTDSRDEPPEQATLQREWPQVPVRAGGFDA------ALLAGAGEIIVSPGVSLREPALET 89

Query: 83  -----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +P+ G  ++              + A + AITGS GK+T   ++     +  +  
Sbjct: 90  ARRAGVPLIGEIELFA----------RHADAPVAAITGSNGKSTVTTLVGRMAEAAGRRV 139

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+        L L       D  I EL    L      TH + P +A +  I+  H+
Sbjct: 140 AVGGNLGTP---ALALLDGETRPDAYILELSSFQL----ETTHSLAPRVAAVLNISADHM 192

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +   A  KA IF G    G   LN DD     +     A   +T+  F  + N  
Sbjct: 193 DRHGSVSAYAGIKARIFHG---AGVQVLNLDDPVVAAM-----AQPGRTVLGFSLASNPR 244

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +           W+ +  +           G H   N L  L +   L   V    +AL
Sbjct: 245 -RGAGVADHRGAPWLHLNGEPVLPAADLRLPGLHNRANALAALCLGQGLGLPVAAMAEAL 303

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F    G   R             ++S   N  +  AAI  L+       G  + + G 
Sbjct: 304 RRFT---GLPHRTEWVAEHAGVRWYNDSKGTNVGAAVAAIRGLA-------GPVVLIAG- 352

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
               G+   +  + LA+ L         L G     L   L   + V  +  M       
Sbjct: 353 ----GDGKGADFLPLADALREKG-RAAVLIGRDAPRLAQVLSGVVPVERAADMRDAVRRA 407

Query: 438 QSSLVDGDVVVV 449
            +    GD V++
Sbjct: 408 ANLARSGDAVLL 419


>gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
 gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 5   GHDASSLDLLPGGATAVVTTHAAIPKTNPELVEARRRGIPVVLRPAVLAKLMA------- 57

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 58  --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 107

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 108 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALV 167

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 168 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 226

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 227 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 286

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
                + + Y  +P  + A ++    +   G+G R  V+     +   +++F  +     
Sbjct: 287 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEFGRAL 345

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L+G    ++ + +  ++ + Y      +   + ++   GDV+
Sbjct: 346 NAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASPGDVI 403

Query: 448 VVKSSNSC 455
           V   +   
Sbjct: 404 VTMGAGDV 411


>gi|228909738|ref|ZP_04073561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
 gi|228850027|gb|EEM94858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SKA  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISKAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA +F+   +  
Sbjct: 163 VVVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A +    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMELSADTKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   +GDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|82542692|ref|YP_406639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii Sb227]
 gi|193065871|ref|ZP_03046932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|193070830|ref|ZP_03051763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194429374|ref|ZP_03061899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218693557|ref|YP_002401224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 55989]
 gi|260842324|ref|YP_003220102.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|260853301|ref|YP_003227192.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|260866241|ref|YP_003232643.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|293476748|ref|ZP_06665156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|307311461|ref|ZP_07591103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|118595690|sp|Q326E7|MURD_SHIBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81244103|gb|ABB64811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella boydii
           Sb227]
 gi|192926458|gb|EDV81091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|192955860|gb|EDV86330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194412594|gb|EDX28891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218350289|emb|CAU95972.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           55989]
 gi|257751950|dbj|BAI23452.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|257757471|dbj|BAI28968.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|257762597|dbj|BAI34092.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|291321201|gb|EFE60643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|306908440|gb|EFN38938.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|315059311|gb|ADT73638.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           W]
 gi|323157845|gb|EFZ43948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EPECa14]
 gi|323160114|gb|EFZ46075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E128010]
 gi|323171251|gb|EFZ56899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LT-68]
 gi|323176396|gb|EFZ61988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1180]
 gi|323181785|gb|EFZ67198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1357]
 gi|323380131|gb|ADX52399.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           KO11]
 gi|323945717|gb|EGB41765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H120]
 gi|324118438|gb|EGC12332.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1167]
 gi|332098911|gb|EGJ03862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           3594-74]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|317478445|ref|ZP_07937606.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_1_36]
 gi|316905404|gb|EFV27197.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_1_36]
          Length = 461

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 146/428 (34%), Gaps = 43/428 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I    +  A  +VV T      G   +  F  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEECKDKASTLVVYTP-AVPQGHAELTYFR-ENGFDIHKRSQVLGIITRSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M    L        CI           T   +     + + E       E
Sbjct: 119 GTHGKTTTSTMAAHLLHQS--HVGCIAFLGGISKNYGTNLLLSATSPYTVIEA-----DE 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H + P ++VIT   P HL  +   E    +       ++  G + L       + 
Sbjct: 172 FDRSFHWLSPWMSVITATDPDHLDIYGTKEAYLESFRHYTTLIQPGGALIL------HKG 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           L+ ++        Y++ +++  DF     +  + + +++       + ++          
Sbjct: 226 LEMQADVQPGVATYTYSRNEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGVPVSINI 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  + +  +  A  +   + ++ F   +   +R+   L       + + Y  +PA +
Sbjct: 285 ENGVAAMALAHLSGATDEEIKQGMASFRGVD---RRFDFKLKNDRIVFLSD-YAHHPAEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHV 404
             ++  + ++    + ++I V+     +   ++ F+ D A+ LSL         Y     
Sbjct: 341 AQSVKSVREL---YQDKKITVIFQ-PHLYTRTRDFYRDFADSLSLSDEVILTEIYPAREQ 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RL 460
            + G     + D L   I        + +   +       +V+VV  +          ++
Sbjct: 397 PIPGVTSQLIYDNLRPGIEKCICR-KEDVLSLLAQ--KHTEVLVVLGAGD--LDNYAPQI 451

Query: 461 INLLLEEF 468
             LL E++
Sbjct: 452 TQLLSEKY 459


>gi|170681706|ref|YP_001742210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SMS-3-5]
 gi|218698511|ref|YP_002406140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI39]
 gi|218703348|ref|YP_002410867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UMN026]
 gi|293403160|ref|ZP_06647257.1| murD [Escherichia coli FVEC1412]
 gi|298378690|ref|ZP_06988574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300900881|ref|ZP_07119018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300938483|ref|ZP_07153223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331661462|ref|ZP_08362386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331681473|ref|ZP_08382110.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
 gi|170519424|gb|ACB17602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           SMS-3-5]
 gi|218368497|emb|CAR16232.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI39]
 gi|218430445|emb|CAR11311.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           UMN026]
 gi|291430075|gb|EFF03089.1| murD [Escherichia coli FVEC1412]
 gi|298281024|gb|EFI22525.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300355645|gb|EFJ71515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300456552|gb|EFK20045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331061377|gb|EGI33340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331081694|gb|EGI52855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKI 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|86149341|ref|ZP_01067572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596407|ref|ZP_01099644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|85840123|gb|EAQ57381.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191248|gb|EAQ95220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927609|gb|EFV06940.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 404

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 8   KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 42

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 43  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 102

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  ++     +     + T I   HL      E    AK   F   
Sbjct: 103 KKCDFFIMEVSSHAL--VQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 157

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 158 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISTIVTNK 208

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 209 NQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 265

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 266 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 314

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 315 AKIAI---ITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVV 371

Query: 449 VKS 451
           +  
Sbjct: 372 ILG 374


>gi|191167754|ref|ZP_03029561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
 gi|190902180|gb|EDV61922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
 gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
          Length = 443

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 150/447 (33%), Gaps = 57/447 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  + +  +  + +DSR   P      + F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLIKQGITPLVMDSRENPPGRETLSQEFPEVLLLTGGFDC-RYLVQASQ- 69

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               +VV+  +      +   V    D++G + +L   A     A +I ITGS GK+T  
Sbjct: 70  ----IVVSPGIPLDTAEVRAAVDMGIDIVGDV-ELFARALADRPACVIGITGSNGKSTVT 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++    +      A  G+    +     L  +  D +  + EL    L      T  + 
Sbjct: 125 TLVGEMAAKAGLKVAVGGNIGVPV-----LDLLDGDHELFVLELSSFQL----ETTSSLN 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A    I+  H+  +S +E    AK  +++    T     N DD     L  + +   
Sbjct: 176 CISATCLNISEDHMDRYSDLESYRQAKLRLYDQ---TKLAIFNRDD-----LLTRPNEPM 227

Query: 244 IKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +   SFG S    D            +   V             +G H   N+L+ + +
Sbjct: 228 NQN--SFGLSLPEGDEWGVNHGVLVHGTTEYV------AGAQVSLVGSHNQANLLVAMAL 279

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D    ++    F   +G   R          + +++S   N  +  AA+  LS 
Sbjct: 280 ADSAGVDKAAMVEVAKQF---KGLAHRCELVGKHQGVSYVNDSKATNVGATIAALQGLSD 336

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                EG+ I + G   +  + S           +L  +  V   G     + +    +I
Sbjct: 337 ----HEGQIILIAGGDGKGADFSTL-------RGALLGVGQVITLGKDGDRIAEQFDGAI 385

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V   E+M             GD+V++
Sbjct: 386 RV---ESMQEAVAQAAQLAKPGDLVLL 409


>gi|212692807|ref|ZP_03300935.1| hypothetical protein BACDOR_02306 [Bacteroides dorei DSM 17855]
 gi|212664596|gb|EEB25168.1| hypothetical protein BACDOR_02306 [Bacteroides dorei DSM 17855]
          Length = 458

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 134/407 (32%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V          +  ++      +  V   L      + + G+
Sbjct: 63  ITDAFRNPATTLVVYTPAVPDTHKEF--TYFRENGFEIHKRSQVLGMLTHAGKGLCVAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +    ++ + E       E  
Sbjct: 121 HGKTTTSTMTAHLLHQS--HVGCNAFLGGISKNYGTNLLLSDSSEYMVIEA-----DEFD 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+I+VIT   P HL  +   E    +  +    ++  G + +       + ++
Sbjct: 174 RSFHWLSPYISVITATDPDHLDIYGTKEAYLESFRKYTSLIQPGGALIV------RKGIE 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +        +Y++ K +  DF        + + + + V   G    +          +N
Sbjct: 228 LQPALQNGVKLYTYSKEEG-DFHAENIHIGNGEIFFDYVSPLGNIPNIQLGVPVSINIEN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 287 GVAAMALAQMSGLTDEEIKRGMASFRGVD---RRFDFKIKNDKVVFLSD-YAHHPSEIKQ 342

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           +I  +  +  + + +  A+      +   ++ F+ D A+         ++ +Y      +
Sbjct: 343 SILSMRAL--YRDKKLTAIF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 398

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +         +L  GD+
Sbjct: 399 PGVTSKLIYDHLRPGIEKSMCK-KEEILDVLSKKDIEVLITLGAGDI 444


>gi|110833457|ref|YP_692316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
 gi|118595639|sp|Q0VS04|MURD_ALCBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110646568|emb|CAL16044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
          Length = 441

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 131/363 (36%), Gaps = 37/363 (10%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    +  + + AR  S+  ++AITGS  K+T   +L     +        G+    
Sbjct: 86  QVVDGKEVIGDIELFARAASEP-LVAITGSNAKSTVTTLLGQVADACGMNPGIGGNLGVP 144

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
                 L  +       + EL    L      T+ +   +A +  ++  HL  ++   + 
Sbjct: 145 -----ALELLDDQARLYVLELSSFQL----ETTYSLSAEVATVLNVSQDHLDRYASFADY 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +AK  +++G +       N DD     L  +  A   + I SFG    AD++L      
Sbjct: 196 LAAKQRVYDGCQ---VAVWNRDD-----LATRPPATVARQI-SFGAHPEADYRL-----D 241

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           SE   +  + +           G+H A N+L  L I   L+ + D A+  +  F    G 
Sbjct: 242 SENGQLLCRGEPLLSLSELALTGHHNAMNILSVLAISDALSLNRDKALATVKTFT---GL 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +     G     ++S   N   + A ++ L+ I    EG+ I V G + +  + S 
Sbjct: 299 PHRCQLVAESGGVRWFNDSKATN---VGATLAALTGIGESIEGKVILVAGGLGKGQDFSP 355

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LAE    Y +    L G     +   +  +        M        +    GD 
Sbjct: 356 -----LAEPARQY-LRAALLMGEDRTTVAQGMSAAP-CELVADMAVAVRRAHALAQPGDA 408

Query: 447 VVV 449
           V++
Sbjct: 409 VLL 411


>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
 gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
          Length = 460

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 123/385 (31%), Gaps = 43/385 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G+ +    +       S+PV G  ++         A        ++ ITG+ GK+TT  +
Sbjct: 73  GVPLNTHPIAGHAAQFSVPVIGDIELFA------RARADLLPHKVVGITGTNGKSTTVAL 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L          G+    I     LA         + EL    +     LT  +   
Sbjct: 127 VHHILQMAGIPSLLGGNIGEPIMAQEPLAPGEGGEGVYVLELSSYQID----LTTSLDCE 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGI 244
           +A +T I P HL  + G    A+AK  +F+           + ++    + + +    G 
Sbjct: 183 VAALTNITPDHLDRYDGFAAYAAAKERLFKMQSPRNLAVFGSLEEPVGAIYRRQIEFRGE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                 G+++ AD    + +Q                       G H  +N+ + + IV 
Sbjct: 243 ------GRAQAADLDALRDRQA----------------NWPSLQGPHNLENVAVAVAIVE 280

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L         A+  F    G   R      +     I++S   N  +   A++   +  
Sbjct: 281 ELGVTEAQWSHAIPRF---RGLPHRMEIVCEEEGVLFINDSKATNTDASAPALAAYPRGE 337

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    V G   E G    + H  L ++   Y +     +G     L +       V
Sbjct: 338 ADRPRIHWIVGGLAKEDGLGKCAEH--LGDIAVAYTVGE---AGPRFAELLEG--EVPKV 390

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E +       + + V GDVV+ 
Sbjct: 391 ERCELVSEAVRRAKDAAVAGDVVLF 415


>gi|307708397|ref|ZP_07644863.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis NCTC
           12261]
 gi|307615496|gb|EFN94703.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis NCTC
           12261]
          Length = 444

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFIYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF   +  + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRGQELGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLLREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L + + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLANKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|254994608|ref|ZP_05276798.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Mississippi]
          Length = 474

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 143/425 (33%), Gaps = 50/425 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------- 109
           +   + KG  ++  +         + +    + D    L     A +L  + T       
Sbjct: 48  VQALLDKGVHVMPDHRADNVQNADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKAL 107

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                I ++GS GKT+T  M+   +          IG    H G    +       ++ +
Sbjct: 108 GAGRTIVVSGSHGKTSTTGMIASIMEHAGMDPTVFIGGIAFHYGNNYKMGAG----EWAV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G        +   IAV+T +   H   +S +E +    ++    ++  G   
Sbjct: 164 VEGDESDAGFTE-----LPCEIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGASV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEV 283
           +         L          +  ++G  +  D +        + +  ++  L G+ +  
Sbjct: 219 MP------SRLSFTLGNGTKCSKITYGL-EGGDLRASNTTYMGDATVFDIVGLNGEEICC 271

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L    +   +           +      G G+R+    N G  T 
Sbjct: 272 GVRLPVPGRHNVENALAAAAVAKHIGVG---CNYIKAGLEGFMGVGRRFEIIANVGGVTF 328

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  ++A+ +     +    GR I +L          Q F  D    +S ++ 
Sbjct: 329 VDD-YAHHPTEIEASRNAAKLSTTS--GRVIGIL--QPHRFTRVQHFFKDFTSAISKFDY 383

Query: 401 --ISHVWLSGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G  V++  ++L             V ++ T D +   + S    GDVV+  
Sbjct: 384 LILTDVYPAGEEVISGCESLDIVREIKSRGFDQVVHASTPDAITDIVASVAQPGDVVIAM 443

Query: 451 SSNSC 455
            + S 
Sbjct: 444 GAGSI 448


>gi|183983182|ref|YP_001851473.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
 gi|229620048|sp|B2HGR5|MURC_MYCMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183176508|gb|ACC41618.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
          Length = 488

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 119/323 (36%), Gaps = 32/323 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E   S    + +      PH+AV+T I   HL  +   E          E L   
Sbjct: 165 DYFVAEADESDGSLLEYT-----PHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPG 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLRKWKQCSEQSWMEVQL 276
           G + +  DD     L  +S  LGI+ +  +G            L  W+Q    +  ++QL
Sbjct: 220 GALVVCADDPGSAALAERSAELGIR-VLRYGSAGHAEAALAATLVSWEQRGTGAVAQIQL 278

Query: 277 QGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            G++    +     G HMA N L  L     + A V   +  L+ F   EG  +R+    
Sbjct: 279 AGEADPRSMRLSVPGRHMALNALGALLAAIEVGAPVGEVLDGLAGF---EGVRRRFELVG 335

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 + D+ Y  +P  ++A +  +   +   G GR + V      +   +++F  +  
Sbjct: 336 TAESVRVFDD-YAHHPTEVRATLEAVRSVVRQSGSGRLLVVF--QPHLYSRTKAFAAEFG 392

Query: 394 E---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                     VL +Y      L+G    ++ + +  ++ V Y      +   + ++   G
Sbjct: 393 SALDAADEVFVLDVYAAREQPLTGISGASVAEHV--TVPVRYLRDFSAVAEVVAAAAGPG 450

Query: 445 DVVVVKSSNSCGF--YRLINLLL 465
           DVVV   +         ++  L 
Sbjct: 451 DVVVTMGAGDVTLLGPEIVAALR 473


>gi|49479386|ref|YP_037974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118479132|ref|YP_896283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196035806|ref|ZP_03103208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196038844|ref|ZP_03106152.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225865894|ref|YP_002751272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228935228|ref|ZP_04098054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947632|ref|ZP_04109922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123426|ref|ZP_04252630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|301055403|ref|YP_003793614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           anthracis CI]
 gi|60390446|sp|Q6HEQ2|MURD_BACHK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158512491|sp|A0RHT3|MURD_BACAH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766037|sp|C1EPS6|MURD_BACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49330942|gb|AAT61588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418357|gb|ABK86776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195991455|gb|EDX55421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196030567|gb|EDX69166.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225789057|gb|ACO29274.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228660202|gb|EEL15838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|228812152|gb|EEM58483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824393|gb|EEM70199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|300377572|gb|ADK06476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSVINADDADVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|323970760|gb|EGB66014.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TA007]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPHASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|311085956|gb|ADP66038.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 484

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 156/425 (36%), Gaps = 60/425 (14%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+      +  +  N   + +    +IP+    +++  L               IA++
Sbjct: 79  DFIIK-----SSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKG---------IAVS 124

Query: 115 GSVGKTTTKEMLTIAL--SSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           G+ GKTTT  M+      S +  T      I S N++  +  +         + I E   
Sbjct: 125 GTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSS--------SYFITEADE 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      + P+I ++T I   H+ ++    +++        + +   GT  +  D
Sbjct: 177 SDASFL-----YLNPNIIIVTNIESDHIDHYDNSFKKLKQTFLIFLKKITLYGTAIVCID 231

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           ++    +           I ++G +KNAD ++  +KQ +      + L+  K + ++ + 
Sbjct: 232 NNAICDILTNLKC----KIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNI 287

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTL 341
            G H A N    + +      + D  I +L  F     R +        +    +    L
Sbjct: 288 PGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRANCML 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--- 398
           ID+ Y  +P  +   I  +    P+     I +          + + + D  + LS    
Sbjct: 348 IDD-YGHHPTELSETIKTIRISWPNKN--LIMIF--QPHRYTRTYNLYHDFVQTLSQVDV 402

Query: 399 ------YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 Y+ +  ++ G   L+L + + +    +V      + +   +  +L   D+++++
Sbjct: 403 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 462

Query: 451 SSNSC 455
            + + 
Sbjct: 463 GAGNI 467


>gi|218547545|ref|YP_002381336.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ATCC 35469]
 gi|218355086|emb|CAQ87693.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia
           fergusonii ATCC 35469]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H      L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLAH-----YLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|228941001|ref|ZP_04103559.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973932|ref|ZP_04134507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980521|ref|ZP_04140831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228779341|gb|EEM27598.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228785798|gb|EEM33802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818680|gb|EEM64747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941682|gb|AEA17578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SKA  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISKAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA +F+   +  
Sbjct: 163 VVVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A +    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSADTKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITIVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   +GDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|197285919|ref|YP_002151791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Proteus
           mirabilis HI4320]
 gi|194683406|emb|CAR44151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           HI4320]
          Length = 436

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 131/347 (37%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS GK+T   ++     +        G+        LTL   P D    
Sbjct: 101 REAKAPIVAITGSNGKSTVTTLVGEMAKADGIPVGVGGNIGVP---ALTLLTQPYD--LY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ +    A +  I+  H++ +  G+E+   AK  I++  +   T
Sbjct: 156 VLELSSFQL----ETTYSLTAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDNAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD     L  K          SFG  +  D+QL    +     ++ V  +     
Sbjct: 209 CVYNADDVLTLPLAGKDA-----RCVSFGIGQG-DYQLDNTNR-----YLNVNGENLLAT 257

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +      ++   +V +   G   R++   +      I
Sbjct: 258 SQMFLSGQHNYTNALAALALADAVGISRKASL---AVLNTYHGLAHRFQLVYSHNGVRWI 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+  L       EG    +LG   +  + S      L   LS  NI 
Sbjct: 315 NDSKATNVGSTEAALRGL-----EVEGTLHLLLGGDGKSADFSA-----LLPYLSGDNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G    AL +  P+   +  + TM+     +  ++  GD+V++
Sbjct: 364 RLYCFGQDGQALANLRPQVSQL--TATMEEAMRLLAPTVQTGDMVLL 408


>gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
 gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
          Length = 469

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 103/355 (29%), Gaps = 36/355 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                    +IA+TGS GK+TT  ++   L+   +     G+    +         P D 
Sbjct: 113 WDGFDVTPKVIAVTGSNGKSTTSALIHHVLTEAGRAAQLAGNIGRGVLDIDP----PEDS 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL        R LT    P +AV T ++P HL    G+    +AK  +F      
Sbjct: 169 GVVVLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPD 224

Query: 221 GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +  D++    L  + +       +      +        W   + + ++     G+
Sbjct: 225 -RAVIGVDEAEGRYLAGQMAEGPNDDRVIRISVDRK--LSGFGWSVFARKGFLSEYRHGR 281

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +  V    G H  QN          L           + FH   G   R +   
Sbjct: 282 QVGSIDLREVKGLPGSHNHQNACAAYAACRTLGLAPRVI---EAGFHSYAGLPHRSQRVA 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +     +++S   N  S   A+     I     G                +        
Sbjct: 339 EKDGVIFVNDSKATNVDSALKALLAFDNIRWICGGL---------------EKDGGLGGL 383

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L ++   ++ G         L  ++      TM             GDVV++
Sbjct: 384 APGLAHVRRAYVIGREAAQFAIGL-GAVDTEVCTTMSEAVARAVRDAEPGDVVLL 437


>gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Rv]
 gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis
           AF2122/97]
 gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           F11]
 gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
 gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           EAS054]
 gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T85]
 gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           210]
 gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN R506]
 gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis
           AF2122/97]
 gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Ra]
 gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis F11]
 gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis W-148]
 gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 494

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 61  GHDASSLDLLPGGATAVVTTHAAIPKTNPELVEARRRGIPVVLRPAVLAKLMA------- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 114 --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 164 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALV 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 224 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 282

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 283 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
                + + Y  +P  + A ++    +   G+G R  V+     +   +++F  +     
Sbjct: 343 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEFGRAL 401

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L+G    ++ + +  ++ + Y      +   + ++   GDV+
Sbjct: 402 NAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASPGDVI 459

Query: 448 VVKSSNSC 455
           V   +   
Sbjct: 460 VTMGAGDV 467


>gi|91228830|ref|ZP_01262736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
 gi|91187601|gb|EAS73927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
          Length = 452

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPRKDQALADVLER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F   +N D+Q    K   + S  +V LQG+ +  V  + +G H   N LM +    
Sbjct: 236 TEKQFS-GENGDWQAH--KLVLDGSKFDVALQGEKVGTVEWNLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPDLACQALGRFINTK---RRLELKGEEQGVTVYDD-FAHHPTAIELTVGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LAE  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAE--SLHSADEVFLFQPDNIEWSVQDIADQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
               + +  +D     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 403 TQPAFVDADIDNFVAKIVERARPGDQILVM-SNG-GFSGIHGKLLEQLKQK 451


>gi|30263914|ref|NP_846291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Ames]
 gi|47529344|ref|YP_020693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186762|ref|YP_030014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Sterne]
 gi|52141576|ref|YP_085253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus E33L]
 gi|167636572|ref|ZP_02394866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|167641133|ref|ZP_02399388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|170688845|ref|ZP_02880048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|170709237|ref|ZP_02899658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|177655544|ref|ZP_02936954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190565997|ref|ZP_03018916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218905043|ref|YP_002452877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228916550|ref|ZP_04080116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928961|ref|ZP_04091993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229604216|ref|YP_002868148.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
 gi|254721447|ref|ZP_05183236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. A1055]
 gi|254735953|ref|ZP_05193659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743848|ref|ZP_05201531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Kruger B]
 gi|254756744|ref|ZP_05208773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Australia 94]
 gi|60389927|sp|Q636B4|MURD_BACCZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390084|sp|Q81WC9|MURD_BACAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711879|sp|B7JK00|MURD_BACC0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766035|sp|C3P682|MURD_BACAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30258558|gb|AAP27777.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. Ames]
 gi|47504492|gb|AAT33168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180689|gb|AAT56065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. Sterne]
 gi|51975045|gb|AAU16595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           E33L]
 gi|167510913|gb|EDR86304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|167527995|gb|EDR90801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|170125844|gb|EDS94750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|170667200|gb|EDT17960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|172080073|gb|EDT65170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190562916|gb|EDV16882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218537488|gb|ACK89886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228830768|gb|EEM76373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843129|gb|EEM88211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268624|gb|ACQ50261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSVINADDADVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|307706011|ref|ZP_07642834.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK564]
 gi|307620430|gb|EFN99543.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK564]
          Length = 444

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 137/372 (36%), Gaps = 56/372 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDG---------TGRGSANAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ +E++ +A  +  + + K   +F+  +D+
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQITKG--LFVYGEDA 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G +++  DF   +  + +  S   V  +G+ +   H    
Sbjct: 210 ELRKITSDA------PIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRGQDLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D++   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +       + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L   + +   V   E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLAKKINKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLINLL 464
               F RL++ L
Sbjct: 428 YEYSFERLLSNL 439


>gi|299783434|gb|ADJ41432.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus fermentum CECT 5716]
          Length = 437

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 122/359 (33%), Gaps = 48/359 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T I + G+ GKT+T  +L   LS++++T   IG                 D  F +FE
Sbjct: 102 NHTSIGVAGAHGKTSTTGLLAHVLSNVEQTSYLIGDGVGVGV---------ADARFFVFE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                   + +      P  A++T +   H   F  + ++  +       ++K   +F  
Sbjct: 153 ADEYRDHFLAY-----HPDYAIMTNVDFDHPDYFKDLADVKDSFETYGRQVKKG--LFAW 205

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D     L           +Y +G + + DF+     +  + S  +   + + +     
Sbjct: 206 GEDKSLRDLNVDV------PVYYYGTAPDDDFRAANIVRTPDGSTYDAYYKDQKLGTFTI 259

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N L  + +  +   D++     L+ F   + R      A  +     + + 
Sbjct: 260 HLYGEHSVLNSLAVVAVAYMEKIDLEKIKAELANFSGVKRRFAEEDIADMK-----VIDD 314

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P+ +KA I    Q  P  E   + V            ++  +  + LS      V+
Sbjct: 315 YAHHPSEIKATIDAARQKFPQKE--LVVVF--QPHTYSRLAAYLTEFGQSLSR--ADKVF 368

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLF--------LFIQSSLVDGD-VVVVKSSNSC 455
           ++      +  ++        ++ ++ L           I   L   D VVV   +   
Sbjct: 369 VT-----PIFGSIREQNGSISAKDLEDLIPGSEDIDQASITKLLAYHDAVVVFMGAGDI 422


>gi|83592288|ref|YP_426040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum rubrum ATCC 11170]
 gi|118595685|sp|Q2RVU2|MURD_RHORT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83575202|gb|ABC21753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 477

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 118/396 (29%), Gaps = 49/396 (12%)

Query: 68  VVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           VV +  +  +      + V   +  +     + + AR R     + ITG+ GK+TT  ++
Sbjct: 77  VVWSPGIPHTFPQPHPVAVIAHERGVPLFCDIDLLARARQDCFFLGITGTNGKSTTTALI 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L + +      G+       P             + EL    L     L   +   +
Sbjct: 137 GHILKAARHPVQVGGNLG----TPALSFEPLPFHGTYVLELSSYQL----ELVPSLCCDV 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+  I P HL+   G++   +AK +IF    + G   +  DD     +         + 
Sbjct: 189 AVLLNITPDHLARHGGMDGYIAAKRQIFRCGPRPGVAVVCIDDEPSLAIHDALCRENGRK 248

Query: 247 IYSFGKSK-------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +              D QL    Q   ++  ++         +    G H  QN    
Sbjct: 249 VVAVSTRALPRGGVGAVDGQLVDATQGRPRAVADLTT-------IATLPGAHNWQNAAAA 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                    D    ++A++ F    G   R            I++S   N  +   A+  
Sbjct: 302 YAACRQHGIDAKIIVEAMASF---PGLPHRQELVAEIDGVRFINDSKATNADAADKALRC 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMG--ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              +            G   E G   L   FH               +L G    A +  
Sbjct: 359 YDTVYWIAG-------GQPKEGGIVSLEPHFHRM----------RQAYLIGQAAPAFERT 401

Query: 418 LPRSIHVHYSET----MDGLFLFIQSSLVDGDVVVV 449
           L   + +    T    +           + G VV++
Sbjct: 402 LKGKVPLSQVGTLTRAVTEAAKAAWRDAIPGAVVLL 437


>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
 gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
          Length = 443

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 124/364 (34%), Gaps = 32/364 (8%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +D  +  ++++  A R      +  ITGS GKTTT  ++              G+  N +
Sbjct: 83  IDKSIPIISEIEFAGRYTHAKMVC-ITGSNGKTTTTSLIYHIFREAGYDVGLAGNIGNSL 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEI 206
            + +          F I EL    L ++       R +IA++  I P HL  +   ++  
Sbjct: 142 ALQV----AEDPHAFYIIELSSFQLDDM----FDFRANIAILLNITPDHLDRYDHCMQNY 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +AK  I +   +  +     DD   +    K     ++  +S  K   +   + + +  
Sbjct: 194 VNAKMRILQNQTEEDSFIFWNDDPIIKRELQKYDIKAMQYPFSELKENGSIGYIEEGRYT 253

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E+            +      G H   N L      SI     D   K+LS F   E  
Sbjct: 254 LEE-----PTPFNMEQEELSLTGRHNIYNSLAAGIAGSIAGIKKDVIRKSLSDFPGVE-- 306

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R    +  G    I++S   N  +   A+  +           I ++G     G+   
Sbjct: 307 -HRLEKVVKVGGVQYINDSKATNVDACWYALDSMRT-------PTILIIG-----GKDKG 353

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
           + +  +  ++    +  V+L G     L D      I V  + +M        +    GD
Sbjct: 354 NDYEPIKALVKEKCVGLVYL-GADNSKLHDNFDHLGIPVRDTHSMKECMEACYAMARPGD 412

Query: 446 VVVV 449
            V++
Sbjct: 413 TVLL 416


>gi|320535924|ref|ZP_08035992.1| UDP-N-acetylmuramate--alanine ligase [Treponema phagedenis F0421]
 gi|320147228|gb|EFW38776.1| UDP-N-acetylmuramate--alanine ligase [Treponema phagedenis F0421]
          Length = 479

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 136/395 (34%), Gaps = 34/395 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L+           +    I G  GKTTT  ++   + ++    + +    + I    
Sbjct: 99  LPTLSYPKALGDFSRHSYSCGIAGVHGKTTTTGIVGTLVKALDLDASVLA--GSMIANFG 156

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               M     F I E        + F      P   V+T++   H   +   E+I +A  
Sbjct: 157 NSCTMIHGDSFFIAETCEYKKHFLNF-----YPKKIVLTSVESDHQDFYPQYEDILAAFL 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQS 270
           +  + L +   IF   DD   +     + +     IY  +G+S +++F ++      E+ 
Sbjct: 212 QYIDRLPQFSEIFYCADDPGAKEAINLAFSSRPDLIYIPYGESVSSEFGVKIHGVRDEKL 271

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA------DVDTAIKALSVFHPKE 324
           +    L+G + E      G+H   N    + +V  L         ++            +
Sbjct: 272 YFS--LKGFAGEFYLTVPGHHNVLNAAAAIALVLSLVKLERKETTINDITIIRKALASFK 329

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G  +R            +D+ Y  +P ++K  +  L +  P+   RRI V   M      
Sbjct: 330 GAKRRSEIVGEAKGILFMDD-YAHHPTAIKTTLKGLKEFYPN---RRIIV-DFMSHTYSR 384

Query: 385 SQSFHIDLAEVLSLYN----------ISHVWLSGFHVLALKDALPRSIH-VHYSETMDGL 433
           + +   + ++  S  +             V+        L +   +S    +Y E +   
Sbjct: 385 TAALLNEFSQAFSSADEIILHKIYASAREVYHGEVTGRQLFELTKKSCRKTYYYEEVMDA 444

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             F++  L  GD+ +   +     ++L   L E+F
Sbjct: 445 ESFLEKELQSGDLFITMGAGDN--WKLGRTLYEKF 477


>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 457

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 119/345 (34%), Gaps = 33/345 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A +IAITGS GKTTT  ++   L    +     G+    I   L++          + 
Sbjct: 110 SQAPMIAITGSNGKTTTTALINEIL---GEKAILAGNIGIPI---LSVVGETQADKRLVM 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T   +P I VIT I P HL     +E   +AK +I   L++   +  
Sbjct: 164 EISSFQLQG----TSFFKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIAANLDEQDFLVY 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NYD    +       A+ +     F +++     + +     +   +       S++   
Sbjct: 220 NYDQEILQEAAKSIKAIKLP----FSRTQVTPELVAEGLYLQDGQVIYHNQPILSLDS-I 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  L +  I   D+       +     +G   R     +       ++S
Sbjct: 275 KIPGDHNIENVLAALAVAVIEKVDLPQVK---ATIEAYKGMPHRIEHVASFKGREFYNDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N   M A I+ L+  +       +  +G   + G         L       +I   +
Sbjct: 332 KATN---MTATITALASFNQD-----LIYIGGGLDRGNEFDDLIPHLG------HIKQAF 377

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     +  A  +  I    ++ +         +   G V++ 
Sbjct: 378 LYGETKEKMAKAFEKVDIPFVLADNLREASHLAYQATQAGQVLLF 422


>gi|281424941|ref|ZP_06255854.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
 gi|281400785|gb|EFB31616.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
          Length = 459

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 130/368 (35%), Gaps = 37/368 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      +   G+ GKTTT  M    +        A +G  + + G    L+ 
Sbjct: 101 RAQVLGTLTRSHKGLCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E       E     H +RP ++VIT+  P HL  +   E    +     E
Sbjct: 160 --DSSDYVVIEA-----DEFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTE 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + ++ D      L+ K H      +Y + + +  DF        + +   +  
Sbjct: 213 LIQPGGALIIHRD------LEMKQHVQEGVKVYDYSR-EAGDFHAENIVIDNGEISFDFV 265

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              ++++ +  G       +N +  + +  +     +     +  +    G  +R+   +
Sbjct: 266 SPIENVKNIKLGQPVPINIENAVAAMAMAQLNGCTAEELRYGMRTY---AGVDRRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P   K  +     +    +GR+I V+     +   ++ F+ + A+
Sbjct: 323 KNDKHVFLSD-YGHHP---KEVLQSARSLKELFKGRKITVMFQ-PHLYTRTRDFYHEFAD 377

Query: 395 VLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS         +Y      + G     + D L   +        D +  +++S   D D
Sbjct: 378 ALSNFDEVVLTEIYPAREEPIEGVTSKLIFDNLKPGVEKTIIR-KDDVLDYVKS--RDFD 434

Query: 446 VVVVKSSN 453
           V+VV  + 
Sbjct: 435 VLVVLGAG 442


>gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 523

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 152/473 (32%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNH 146
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVNDV 148

Query: 147 I------------GVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           I              P +L      R  VD       + +S     +     +   +   
Sbjct: 149 IGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
             I+P H+         +    K ++   L  +    +N + + F E+  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQL---LVNSRKCIINAETAHFNEVYAAATTTTNPDS 265

Query: 247 IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +            DF+    +   +++  ++              +     +G  
Sbjct: 266 IYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K +       GR +  R   +     ++   Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKNHG----MVVVDYAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A ++ +         + I V+G     G+   S     +E LS Y     +L     
Sbjct: 381 SMMALMNFMQS--EFNNPKIIVVVGAP---GDKGVSRRPGFSESLSAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSETMDGL--FLFIQSSLV---DGDVVVV--KSS 452
           G     ++ + +   I     +    L     I  ++      DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGA 487


>gi|297566092|ref|YP_003685064.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296850541|gb|ADH63556.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 463

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 128/392 (32%), Gaps = 50/392 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++ +   +  K   + +TGS GKTTT  ML                 +  + +   L 
Sbjct: 98  LRRVHLLGEILGKGYSLGVTGSHGKTTTSAMLASIFLEAG--------TDPTVILGAKLP 149

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--------NFSGIEEI 206
            M  +  +G  +  ++ + E       +   +AV+  + P H+              + +
Sbjct: 150 SMGGNARYGRGKYRIAEVDESDPWFQHLALDVAVVMNLEPDHVGTPTERRPNYHPDFDSL 209

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             A        ++   +  N +    + L             SFG  +  D   +     
Sbjct: 210 KEAVRRFARNAQR---VVYNAEWPGLDELIQHPKR------VSFGL-EQGDCHTQNLHLL 259

Query: 267 SEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              S   V  +G  + +V     G H   + L  + +  +         KAL+ F    G
Sbjct: 260 PMSSRFTVVWRGDPLGLVELGVPGLHNVVDALAAITVALLEGLPFSAIQKALAAF---RG 316

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGEL 384
             +R+          ++D+ Y  NP  +++ +           GRR+ AV          
Sbjct: 317 AHRRFELLGEIHGAWVVDD-YAHNPTKVRSVLEAAKGT-----GRRVRAVF--QPHRYLR 368

Query: 385 SQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           +     + AE         VL +Y      + G     + D L    H            
Sbjct: 369 TAQLWAEFAEALGLADEALVLEVYAAGEQPIPGVSGRMIADKLIAQGHNAQFLGWSEARD 428

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +++ +L DGD+V+   +     ++L   LLE 
Sbjct: 429 YLEKNLKDGDLVLTIGAGDV--WKLGKELLER 458


>gi|149914524|ref|ZP_01903054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
 gi|149811317|gb|EDM71152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
          Length = 496

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 115/373 (30%), Gaps = 36/373 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV     +  A    A  A       ++A+TGS GK+TT  ++   L    K     G+
Sbjct: 126 VPVDNDIGLFFASLGGADWAVHDVAPRVVAVTGSNGKSTTSALIHHVLHEAGKDVQLAGN 185

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +         P D    + EL          L   + P +AV T ++P HL   +G
Sbjct: 186 IGRGVLDIDP----PGDGGVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHAG 237

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
           +    +AK  +F          +  D+     +  + + A G   +      +       
Sbjct: 238 LGGYFAAKRRLFAEGGPD-RAVIGIDEPEGLFMAGQLATAPGDDRVIRISVDRK--LAGP 294

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W   + + ++    +GK      +  +    G H  QN          L+       +A
Sbjct: 295 GWSVFARKGFLSEYRKGKQQGAIDLREIKGLPGQHNHQNACAAYAACRSLSLSPKVIERA 354

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              FH   G   R +    +   T +++S   N  S   A++  + I     G       
Sbjct: 355 ---FHSFAGLPHRSQVIAEKDGVTFVNDSKATNVDSALKALNAFANIRWICGGL------ 405

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
              E G               L N+   ++ G         L          TM      
Sbjct: 406 -QKEGGLAGLE--------PGLRNVLKAYVIGREAAQFALQL-TGTEAETCTTMQTAVAH 455

Query: 437 IQSSLVDGDVVVV 449
             +    G+ V++
Sbjct: 456 AMADAKPGETVLL 468


>gi|168789615|ref|ZP_02814622.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
 gi|261226845|ref|ZP_05941126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255249|ref|ZP_05947782.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370788|gb|EDU89204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
          Length = 438

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKFSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G   + L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGVQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|300905497|ref|ZP_07123261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300919643|ref|ZP_07136134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|301303812|ref|ZP_07209932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|300402647|gb|EFJ86185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300413283|gb|EFJ96593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|300840939|gb|EFK68699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|315253162|gb|EFU33130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 85-1]
          Length = 438

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALHPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|109899822|ref|YP_663077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
 gi|109702103|gb|ABG42023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
          Length = 441

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 44/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +      +  K     G+          L  +  D D  + E
Sbjct: 102 NTPVLAVTGSNGKSTVATLAYEMCLAAGKKALLGGNIGIP-----ALELLEKDADIIVLE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ +RPH+A +  ++  HL     +     AK  I+     +     N
Sbjct: 157 LSSFQL----ETTYTLRPHVACMLNLSDDHLDRHGDMLSYQRAKLRIYRDARFS---VCN 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD       A +  + I     FG S +   +   W + +      + L GK     H 
Sbjct: 210 RDD-------AATWPMTINPDVMFGLSSSE--RGLSWNKDTAH----ILLDGKDFLDSHA 256

Query: 287 --GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N+     +  +   D+     A + F    G   R +          I++
Sbjct: 257 CMLVGEHNMLNIQAATAMAMLAGIDLTAIKLAATSF---AGLAHRCQTVAVSHHVRWIND 313

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI  LS   P  +G+ I + G   +  + S               ++ +
Sbjct: 314 SKATNVGATIAAIDGLS---PTCKGKLILIAGGDGKGADFSPLEER------FNVQVNEL 364

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVV 449
              G     L +    S   H   T+D     + ++L +GD  V++
Sbjct: 365 ITLGKDGPKLAELKANS---HQVATLDDAVQ-LAATLAEGDATVLL 406


>gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 441

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 123/362 (33%), Gaps = 46/362 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  ++++  AAR     T I ITGS GKTTT  ++   L++     A  G+        +
Sbjct: 92  LPVISEIEFAARYTRSFT-IGITGSNGKTTTTNLVYHLLATAGMDVAMGGNVGKSFARIV 150

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAK 210
                  D  F + EL    L  IR      RP IA+I  I P HL  +   +E+ A+AK
Sbjct: 151 ----AERDYPFYVLELSSFQLEGIRE----YRPDIAMILNITPDHLDRYDYQLEKYAAAK 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             I +  +   T   N DD                   SF              Q +E +
Sbjct: 203 FNIVKAQQAEDTFLYNADDPNVGGQLEHYPTQAKAVPISF--------------QMTEGT 248

Query: 271 WMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++V   G + ++     +G H   N L  + +   +    +   + L+ F        R
Sbjct: 249 RLKV--GGYTFDMSTTPLMGRHNYMNALFAVQVALQVGIAPEAIQEGLNTFVNAP---HR 303

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  S+  A+  +S+ +    G            G+   + +
Sbjct: 304 LEKVATVEGVEYINDSKATNVDSVYYALEAMSRPTVWIVG------------GQDKGNDY 351

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
             L E +    +  V   G     +       +   V     ++ +          GD V
Sbjct: 352 GPLLEFV-KAKVKAVVCMGLDNRKIVQCFSGIVENIVETGSAVEAVTAA-ARLASPGDTV 409

Query: 448 VV 449
           ++
Sbjct: 410 LL 411


>gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 441

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 131/422 (31%), Gaps = 66/422 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F + A     G+ +    + A      IP+ G  D+           R   +  ++ ITG
Sbjct: 72  FGISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRRCPVVGITG 129

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   L               +IG+PL  A    D    + EL    +   
Sbjct: 130 TNGKSTTTALIHHILKEAG----LPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID-- 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++
Sbjct: 184 --LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVI 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +S A  +                       + +W  +Q             G H AQN
Sbjct: 242 AKQSAAHLV------------TVHADNISAEDQVNWPNLQ-------------GPHNAQN 276

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            ++ + +  IL    D             G   R +    +     ID+S   N  +   
Sbjct: 277 AVLAMAVAHILGISDDVI---SKALISYAGLPHRMQKIGERRGVLFIDDSKATNAMATAP 333

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++    I          +LG + +  +L               +I   +  G       
Sbjct: 334 ALAAFPAIHW--------ILGGVPKTADLDPC-------KAFYNHIRQAYTIGQAGPDYA 378

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
             L    ++V    T++             +VV++    +S             F +++ 
Sbjct: 379 QLLREAGVNVVECGTLEKAVRLAAEEAQPDEVVMLTPACASFDQFSDYEARGQAFKKIVE 438

Query: 463 LL 464
            L
Sbjct: 439 AL 440


>gi|293417964|ref|ZP_06660586.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
 gi|291430682|gb|EFF03680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
          Length = 438

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKISGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus iners AB-1]
 gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
 gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
          Length = 519

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++ +A + GA   V         G  ++ V  V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPEGKGMHALIVSNV 93

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN-- 145
              +  L+        +    +IA TG+ GKTT+   L   L  +     A   S ++  
Sbjct: 94  TKAMSLLSAAF-YRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVV 152

Query: 146 ----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +  P +L      R  VD       + +S     +     +   +    
Sbjct: 153 GPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFL 212

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
            I P H+        E+    K ++     K     +N   D F E+  A +      +I
Sbjct: 213 NITPDHIGVNEHPNFEDYLHCKLQLMVNSRK---CIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 248 YSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHM 292
           Y F ++        +  DF+    +    ++  ++  +  +   +          IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +                 G+            ++D  Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQD---CYDGIKNVTIPGRMETLTTANHGTVIVD--YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG 408
           M A +S +         + I V+G     G+   S     +E LSLY  + V+L     G
Sbjct: 385 MIALMSFMQ--KEFDSPKIIVVVGAP---GDKGISRRAGFSESLSLY-ANQVFLTTDDPG 438

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KSS 452
                 + D +   I     + M        +   I+ +  D DVV++  K +
Sbjct: 439 FEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGA-KDDDVVLICGKGA 490


>gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
          Length = 517

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 158/488 (32%), Gaps = 75/488 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P    R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSM- 281
           +  A +     ++IY F    +A F+ ++            +    +S   +    +   
Sbjct: 253 VYAAATTTTYPESIYLF---ASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAA 309

Query: 282 ------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       IG     N    +    +   D   A+  ++     +  G+     + 
Sbjct: 310 ALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAK---VKIPGRMEHTKVA 366

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +D  Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 367 GHGAVYVD--YAHNYASMKALLSFLKH--AYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDV 446
           L+ +       +          + + +   I      VH             S     D+
Sbjct: 420 LTEFATEAFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDI 479

Query: 447 VVV--KSS 452
           VVV  K +
Sbjct: 480 VVVAGKGA 487


>gi|311086530|gb|ADP66611.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 156/425 (36%), Gaps = 60/425 (14%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+      +  +  N   + +    +IP+    +++  L               IAI+
Sbjct: 48  DFIIK-----SSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKG---------IAIS 93

Query: 115 GSVGKTTTKEMLTIAL--SSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           G+ GKTTT  M+      S +  T      I S N++  +  +         + I E   
Sbjct: 94  GTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSS--------SYFITEADE 145

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      + P+I ++T I   H+ ++    +++        + +   GT  +  D
Sbjct: 146 SDASFL-----YLNPNIIIVTNIESDHIDHYDNSFKKLKQTFLIFLKKITLYGTAIVCID 200

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           ++    +           I ++G +KNAD ++  +KQ +      + L+  K + ++ + 
Sbjct: 201 NNAICDILTNLKC----KIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNI 256

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTL 341
            G H A N    + +      + D  I +L  F     R +        +    +    L
Sbjct: 257 PGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRANCML 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--- 398
           ID+ Y  +P  +   I  +    P+     I +          + + + D  + LS    
Sbjct: 317 IDD-YGHHPTELSETIKTIRISWPNKN--LIMIF--QPHRYTRTYNLYHDFVQTLSQVDV 371

Query: 399 ------YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 Y+ +  ++ G   L+L + + +    +V      + +   +  +L   D+++++
Sbjct: 372 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 431

Query: 451 SSNSC 455
            + + 
Sbjct: 432 GAGNI 436


>gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 491

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 172/488 (35%), Gaps = 71/488 (14%)

Query: 6   TFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL  I+   +   P      + +  D+R +        +KG       F    +  
Sbjct: 7   TIEQLL--IEQQLLVSKPNIDLAFDFLHYDTRQVKANTLLV-VKGA------FRPEYLTH 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
            A +  + T+   +I  +S+P + V +V  AL  L++A     +    I A TG+ GKTT
Sbjct: 58  TADIEGLITE---TILDVSLPQWQVTNVQKALAVLSMAFFDYPQKALWIGAFTGTKGKTT 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP---------LTL---------ARMPVDVDFG 163
              M    L      +  + S  + I            LT           R  VD    
Sbjct: 115 AAYMAFNILKDATNNHTALFSTVDRITGTGPGDKKKSDLTTPESYELFKDMRQAVDNGMT 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTG 221
              + +S    ++   + +R ++     I+P H+        E+  + K  +F+    + 
Sbjct: 175 HLIMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLAHKMMLFDH---SD 231

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQ---LQ 277
            + +N +    + +   +     K +Y++  + +  ++     +    +S + V+   L 
Sbjct: 232 QVIVNAESEHLKTVLGHATQTHDK-VYTYSLAGQGGNYSYVSRESAIHESRLIVEPSDLN 290

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             + E   +  G     N +  L + ++  A  +  +            G+     +   
Sbjct: 291 ELAGEYRLNLPGDFNESNAMAALIMTALAGAKHENMVHG---LDVVFIPGRMLSLPIVGH 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D  Y  N ASM+A ++      P   G+ + V+G     G    S   D   V+S
Sbjct: 348 GVAFVD--YAHNYASMRALLNFAQNQYPE--GKVLVVVGSP---GNKGVSRRADFGRVVS 400

Query: 398 LYNISHVWLSG-----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDG--D 445
                 V+L+          A+ D +  +I      VH+   MD +    Q+    G  D
Sbjct: 401 EL-ADIVYLTADDPQFESPKAIADEIAENINNKQLEVHF--EMDRIKAIFQAIKQSGERD 457

Query: 446 VVVV--KS 451
           +V+V  K 
Sbjct: 458 IVIVAGKG 465


>gi|227356426|ref|ZP_03840814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
 gi|227163536|gb|EEI48457.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
          Length = 436

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 133/349 (38%), Gaps = 44/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS GK+T   ++     +        G+        LTL   P D    
Sbjct: 101 REAKAPIVAITGSNGKSTVTTLVGEMAKADGIPVGVGGNIGVP---ALTLLTQPYD--LY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ +    A +  I+  H++ +  G+E+   AK  I++  +   T
Sbjct: 156 VLELSSFQL----ETTYSLTAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDNAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD     L  K          SFG  +  D+QL    +        + + G+++ 
Sbjct: 209 CVYNADDVLTLPLAGKDA-----RCVSFGIGQG-DYQLDNTNRY-------LNVNGENIL 255

Query: 283 VVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +      ++   +V +   G   R++   +     
Sbjct: 256 ATSQMFLSGQHNYTNALAALALADAVGISRKASL---AVLNTYHGLAHRFQLVYSHNGVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       EG    +LG   +  + S      L   LS  N
Sbjct: 313 WINDSKATNVGSTEAALRGL-----EVEGTLHLLLGGDGKSADFSA-----LLPYLSGDN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G    AL +  P+   +  + TM+     +  ++  GD+V++
Sbjct: 363 I-RLYCFGQDGQALANLRPQVSQL--TATMEEAMRLLAPTVQTGDMVLL 408


>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 457

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 131/371 (35%), Gaps = 37/371 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      +  + ++ +A R      I+AITG+ GKTTT  ++   L    +     G+  
Sbjct: 86  VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIG 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                 +       +    + E+    L  I++     +P I  I  I P HL+    +E
Sbjct: 146 LPFIDTI---ETSSEDTIFVLEISSFQLETIKYF----KPKIGCILNITPDHLNRHLTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AK  IFE +++ G   LNYD++    L   +       +  F K+K    Q     
Sbjct: 199 NYTKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKG----NVIVFSKTKT---QFENV- 250

Query: 265 QCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              E   +    +GK+ EV+        G H  +N L  +        + DT  + L  F
Sbjct: 251 VFVENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPFGIEKDTIEQVLKTF 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              E    R             ++S   N  + + A++             I + G    
Sbjct: 311 RGVE---HRIEFVAEINGIKFYNDSKGTNTDAAEKALNAFEN-------PIILIAGG--- 357

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQ 438
             +  +SF    A +++   +  V+L G     +   L R    +  +  T+        
Sbjct: 358 -YDKGESF-EKFASLVAK-KVKKVFLLGQTKQKIASELERIGYKNFEFVSTLKEAVRKSF 414

Query: 439 SSLVDGDVVVV 449
               +GD+V++
Sbjct: 415 ECAQNGDIVLL 425


>gi|257462517|ref|ZP_05626929.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D12]
 gi|317060172|ref|ZP_07924657.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
 gi|313685848|gb|EFS22683.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
          Length = 447

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 23/266 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M++          A + S +  I V   L  +  +   G+ E  ++
Sbjct: 104 IAVAGTHGKTTTSSMMS----------ATMLSLDPTIVVGGILPEIASNAKVGMGEYFIA 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       +RP  A+IT I   HL     +E I  +  +  +  E+   + +  D  
Sbjct: 154 EADESDNSFLFMRPKYAIITNIEEDHLETHGNLENIKKSFRQFVDQTERQ--VLVCKDCV 211

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               + +++       I S+G  + AD   +  +    ++  EV  +G++         G
Sbjct: 212 NVRSVFSENE-----KITSYGIEQEADIMAKNIEIVDGKTSFEVWTEGENQGRFSISIPG 266

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +          +       + H +  + +      +Q     I + Y  +
Sbjct: 267 KHNILNSLPVIYFALKFGVSKEEIQ--DKLLHFRGSKRRYDILYWDQEKNRKIIDDYAHH 324

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL 375
           P  ++A +  +  I     G+ I + 
Sbjct: 325 PTEIQATLKGVKSIET---GKIIGIF 347


>gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 551

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 151/478 (31%), Gaps = 69/478 (14%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  +S DSR I     FF  KG  +    ++  A   GA   V         G     
Sbjct: 57  TKIEYVSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH--- 111

Query: 85  VFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIG 141
              V DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I 
Sbjct: 112 ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQMNGGRTALIS 171

Query: 142 SYNN------------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           S N+             +  P +L      R  VD       + +S     +     +  
Sbjct: 172 SVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 231

Query: 185 HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHA 241
            +     I P H+         +    K ++     K     +N + D F E+  A +  
Sbjct: 232 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAESDHFDEIYAAATTT 288

Query: 242 LGIKTIYSFGKSK--------NADFQLRKWKQCSEQSWME---VQLQGKSM----EVVHH 286
               +IY F              DF+    +    ++  +   V  + K +    E    
Sbjct: 289 TNPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQLPINGEYTLQ 348

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N    +    +     D   K +           R +  + +    +I + Y
Sbjct: 349 MIGDFNESNATAAIIGAGLAGMSHDACAKGIRHVTIPG----RMQTEMTKDHGMVIVD-Y 403

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N ASM A +S +         + I V+G     G+   S     +E L+ Y     +L
Sbjct: 404 AHNKASMMALMSFVK--REFNNPKIIVVVGAP---GDKGVSRRPGFSESLTAY-ADKAFL 457

Query: 407 ----SG-FHVLALKDALPRSIHVHYSETMDGL--FLFIQSSLV---DGDVVVV--KSS 452
                G     ++ + +   I     +    L     I  ++      DVV++  K +
Sbjct: 458 TTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVVLICGKGA 515


>gi|148977787|ref|ZP_01814343.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
 gi|145963001|gb|EDK28271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
          Length = 452

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 148/405 (36%), Gaps = 29/405 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     +++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDNNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +    +++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YAPGFLVGGVLGNFSISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G IF    D+  + + ++      + 
Sbjct: 181 LVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFSPKQDTAIQDVLSRGCWSDAE- 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
                  +  D+  +  K   + S  EV  QG+ +  VV   +G H   N LM +     
Sbjct: 240 ----SSGEAGDWDAK--KLVKDGSQFEVYFQGECVGTVVWDLVGDHNVNNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A ++L+ F   +   +R          ++ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVTPDLACESLAKFINTK---RRLEFKGEVAGVSVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIH 423
               + IAVL        + +  H + LA+ L   + ++++       +++D A      
Sbjct: 348 VDSKKIIAVLE--PRSATMKRGVHKETLADSLKQADSTYLFQPDNIDWSVQDVADACHQP 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLL 464
            H S+ MD     I S    GD ++V  SN  GF     +L++ L
Sbjct: 406 AHVSDDMDVFVAKIVSEAQAGDQILVM-SNG-GFGGIHQKLLDAL 448


>gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 438

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LTRYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--IAQQTETMEEAMRLLAPRVQPGDMVLL 410


>gi|157156086|ref|YP_001461258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli E24377A]
 gi|209917281|ref|YP_002291365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SE11]
 gi|218552671|ref|YP_002385584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI1]
 gi|300816126|ref|ZP_07096349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300923130|ref|ZP_07139190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|301330131|ref|ZP_07222800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|157078116|gb|ABV17824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E24377A]
 gi|209910540|dbj|BAG75614.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE11]
 gi|218359439|emb|CAQ96977.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI1]
 gi|300420585|gb|EFK03896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|300531333|gb|EFK52395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300843878|gb|EFK71638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|320200393|gb|EFW74979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EC4100B]
 gi|324017751|gb|EGB86970.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 117-3]
          Length = 438

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTF---AGLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|329964555|ref|ZP_08301609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fluxus YIT
           12057]
 gi|328524955|gb|EGF52007.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fluxus YIT
           12057]
          Length = 457

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 116/332 (34%), Gaps = 32/332 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +   +  + + G+ GKTTT  M    L        C            T   +
Sbjct: 101 RSQVLGIITHNSKGLCVAGTHGKTTTSTMAAHLLHQS--HVGCTAFLGGIAKNYGTNLLL 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +  + + E       E     H + P I+VIT   P HL  +   E    +       
Sbjct: 159 SQESPYTVIEA-----DEFDRSFHWLSPWISVITATDPDHLDIYGTKEAYLESFRHYTTL 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++  G + L       + L+ +       TIY++ +++  DF     +  + + +++   
Sbjct: 214 IQPGGALIL------HKGLELQPDVQPGVTIYTYSRNEG-DFHAENIRIGNGEIFIDFIA 266

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + ++          +N +  + +  +  A  +   +A++ F       +R+   L 
Sbjct: 267 PDTRINDIRLGVPVSINIENGVAAMALAHLSGATDEEIKQAMASFRGVN---RRFDFKLK 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 + + Y  +PA +  ++  + ++  + + +  A+      +   ++ F+ D A+ 
Sbjct: 324 TDKVVFLSD-YAHHPAEIAQSLKSIREL--YRDKKITAIF--QPHLYTRTRDFYKDFADS 378

Query: 396 LSL---------YNISHVWLSGFHVLALKDAL 418
           LSL         Y      + G     + D L
Sbjct: 379 LSLADEVILTEIYPAREQPIPGVSSELIYDHL 410


>gi|91209152|ref|YP_539138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UTI89]
 gi|110640301|ref|YP_668029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 536]
 gi|117622374|ref|YP_851287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|191174589|ref|ZP_03036083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218557028|ref|YP_002389941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli S88]
 gi|237704237|ref|ZP_04534718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|300984510|ref|ZP_07177002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|306815314|ref|ZP_07449463.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|331661134|ref|ZP_08362066.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
 gi|118595655|sp|Q0TLQ1|MURD_ECOL5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595656|sp|Q1RGA7|MURD_ECOUT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91070726|gb|ABE05607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           UTI89]
 gi|110341893|gb|ABG68130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           536]
 gi|115511498|gb|ABI99572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|190905136|gb|EDV64781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218363797|emb|CAR01457.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           S88]
 gi|222031919|emb|CAP74657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LF82]
 gi|226902149|gb|EEH88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|281177308|dbj|BAI53638.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE15]
 gi|294492798|gb|ADE91554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           IHE3034]
 gi|300306679|gb|EFJ61199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|305850976|gb|EFM51431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|307629662|gb|ADN73966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UM146]
 gi|312944694|gb|ADR25521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285166|gb|EFU44611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 110-3]
 gi|315300011|gb|EFU59249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 16-3]
 gi|323950916|gb|EGB46793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H252]
 gi|323955286|gb|EGB51059.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H263]
 gi|324012251|gb|EGB81470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 60-1]
 gi|331052176|gb|EGI24215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
          Length = 438

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|300726288|ref|ZP_07059741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
 gi|299776485|gb|EFI73042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
          Length = 443

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 118/352 (33%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     +        G+  N + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKTAGYDAGLAGNIGNSLALQV----AEEPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I +   +
Sbjct: 151 EYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDNKFENYADAKMRILQNQTQ 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQG 278
             +     DD   +    K    G    +S  K KN    +   K   E  +   ++   
Sbjct: 207 EDSFIYWNDDPVIQKELNKFKITGRACPFSEIKEKNVIGYIEDGKYIIEHPTPFCMEQDD 266

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S+       G H   N L       I     +   K LS F   E    R         
Sbjct: 267 MSLT------GKHNIYNSLAAGIAADIAGIKKEDIHKGLSSFPGVE---HRLEKVCKVDG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  +   A+  +           I +LG     G+   + +  + +++  
Sbjct: 318 VQYINDSKATNVDACWYALESMKT-------PTILILG-----GKDKGNDYSQIYDLVKE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V+L G     L +   +  I V  +  M       +     GD V++
Sbjct: 366 KCRGLVYL-GADNKKLHENFDQFGIPVKDTHGMKECVQACRDLAQPGDTVLL 416


>gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 461

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 145/403 (35%), Gaps = 37/403 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD       + A LVVV+  +  ++  +   V      +    ++ +AAR  +   I+A
Sbjct: 62  GHD--AEDFTR-ADLVVVSPGVPMALAEV---VRARAAGVPVWGEVELAARFLAGVPIVA 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GK+TT  +     +  ++T+   G+    +   +         +  + EL    +
Sbjct: 116 ITGTNGKSTTTALAGALFARHRRTF-TGGNLGTPLCQHV---LDGGGAEVVVAELSSFQM 171

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +  L    RP +A I  + P HL  +  +++ A+AKA +F   +       N  D   
Sbjct: 172 EGLLSL----RPRVAAILNVTPDHLDRYRDVDDYAAAKARLFGLQQPGDHAVANARDPRA 227

Query: 233 ELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-- 286
             +   S A+    +++FG         D  L   +  + + W++ +  G     + +  
Sbjct: 228 LAMAEASRAV----LHTFGFGPPGPGARDPGLEPDEGGATELWVQARGGGPERFRLANRA 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N +  +    +L          L  F    G   R      +G    +++S 
Sbjct: 284 LRGRHNRENAMAAVLCARLLGVPGGEVQAGLDAFG---GLPHRLEVVGERGGIEWVNDSK 340

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S    +S      P G  R + V+G   +    +          L    +  +  
Sbjct: 341 ATNVDSTLVGLSAF----PAGTARVVLVMGGRGKGAPYAP------LRPLFAGRVKALLT 390

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G    A++  L          T++       + +  GD V++
Sbjct: 391 IGEDAPAVERELGDLCPTEACVTLEAAVRRAAALVRPGDAVLL 433


>gi|332670128|ref|YP_004453136.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339166|gb|AEE45749.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 474

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 135/377 (35%), Gaps = 27/377 (7%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVP 150
           L  L++    A L +    +A+ G+ GKTTT  M   AL       +  IG     +   
Sbjct: 91  LRVLHRSEALAALMADRDAVAVAGAHGKTTTSAMAATALLHAGADPSFAIGGTVLTVDGA 150

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L  +R        + E   S    + +      P +AV+T + P HL ++   E    A 
Sbjct: 151 LGGSRDGRG-PAFVAEADESDGSFLAY-----EPLVAVVTNVEPDHLDHYGSREAFEDAF 204

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK---TIYSFGKSKNADFQLRKWKQCS 267
                 +   G +    DD     L   + A        + ++G+S  A+ ++ + +   
Sbjct: 205 VAFVRRVRPGGVLVACADDEGAARLVETAAADLAAAGVRVVTYGRSAGAEVRVGEQRPAD 264

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               +++     ++ V     G H A +       V  L    + A +AL  F    G G
Sbjct: 265 GGWDVDLTTDATTVTVHLAVPGTHNALDAAAAWAAVRALGIPAEEAARALGAF---RGTG 321

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R+      G   ++D+ Y  +P  + A +     ++  G   R+ VL     +   +++
Sbjct: 322 RRFEDRGTAGGVRVVDD-YAHHPTEVAALLRAARTVAGDG---RVLVLFQ-PHLYSRTRT 376

Query: 388 FHIDLAEVLSLYN---ISHVWLSGFHV------LALKDALPRSIHVHYSETMDGLFLFIQ 438
           F  +    L L +   ++ V+ +            L + +P      +          + 
Sbjct: 377 FAREFGAALDLADVAVVTDVYAAREDPDPSVTGALLVEHVPTPGRATFVADRVDAARAVA 436

Query: 439 SSLVDGDVVVVKSSNSC 455
           ++   GD+++   +   
Sbjct: 437 AAARPGDLLLTVGAGDV 453


>gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
 gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
          Length = 519

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++ +A + GA   V         G  ++ V  V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPEGKGMHALIVSNV 93

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN-- 145
              +  L+        +    +IA TG+ GKTT+   L   L  +     A   S ++  
Sbjct: 94  TKAMSLLSAAF-YRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVV 152

Query: 146 ----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +  P +L      R  VD       + +S     +     +   +    
Sbjct: 153 GPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFL 212

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
            I P H+        E+    K ++     K     +N   D F E+  A +      +I
Sbjct: 213 NITPDHIGVNEHPNFEDYLHCKLQLMVNSRK---CIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 248 YSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHM 292
           Y F ++        +  DF+    +    ++  ++  +  +   +          IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +                 G+            ++D  Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQD---CYDGIKNVTIPGRMETLTTANHGTVIVD--YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG 408
           M A +S +         + I V+G     G+   S     +E LSLY  + V+L     G
Sbjct: 385 MIALMSFMQ--KEFDSPKIIVVVGAP---GDKGISRRAGFSESLSLY-ANQVFLTTDDPG 438

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KSS 452
                 + D +   I     + M        +   I+ +  D DVV++  K +
Sbjct: 439 FEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGA-KDDDVVLICGKGA 490


>gi|298373285|ref|ZP_06983274.1| UDP-N-acetylmuramate--alanine ligase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274337|gb|EFI15889.1| UDP-N-acetylmuramate--alanine ligase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 457

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 126/373 (33%), Gaps = 42/373 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTT   M+   L        A +G  + +    L L+      D  + E   
Sbjct: 110 LCVAGTHGKTTISSMIAHLLRQSSVDCNAFLGGISLNYNSNLLLS---DRSDLVVIEA-- 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E     H + P +AV+++    HL  +   E    A       +++ GT+      
Sbjct: 165 ---DEYDRSFHRLSPFMAVVSSTDADHLDIYHTHEGYIEAFEHFCGLIKEGGTLI----- 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
            + + +    H       Y++  S+NADF     +  + +   +  L GK + ++     
Sbjct: 217 -YKKGITLSPHLQRNVKTYTYSASENADFYADNIRIGNGKLLFDAVLLGKRIADLDLGVP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N +  + +  +  A  D    A++ +     R +++          +  + Y  
Sbjct: 276 VLVNVENAIAAIAVAWLNGATADELRAAIASYKGVRRRFEQHLSEPK-----IYIDDYAH 330

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSL--------- 398
           +P  + ++I  L  +    +     VLG     +   +  F  + A+ LSL         
Sbjct: 331 HPKELASSIRSLKLLYADKK-----VLGVFQPHLYSRTADFCDEFAQALSLLDEIVLVEI 385

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           Y      + G     + D +          T   L   +       DV+V   +     Y
Sbjct: 386 YPAREEPIPGVSSQIIFDRITNPNKT--LTTKAKLLDVLGD--KRFDVLVTLGAGDIDMY 441

Query: 459 --RLINLLLEEFP 469
             R+   L  ++ 
Sbjct: 442 VPRIKEFLTNQYK 454


>gi|288958921|ref|YP_003449262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azospirillum sp.
           B510]
 gi|288911229|dbj|BAI72718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azospirillum sp.
           B510]
          Length = 473

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 103/299 (34%), Gaps = 22/299 (7%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +V +  +  +      PV      LG   +  + +  R       I ITG+ GK+TT  +
Sbjct: 69  IVWSPGIPHTFPKPH-PVAERARALGIELICDIELLGRAERDCAFIGITGTNGKSTTTTL 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  +  A  G+    +     +          + E+    L     LTH +   
Sbjct: 128 IGHILAAAGRKAAVGGNLGTPVLTFDPIGAGNA----CVLEMSSYQL----ELTHSITFD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+  I P HL+   G++   +AK  IF    +  T  +  DD     + A   A G +
Sbjct: 180 IAVLLNITPDHLARHGGMDGYIAAKTLIFHRQTRPRTAVIGVDDEHCRKIHAGLVAAGDQ 239

Query: 246 TIYSF---GKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            I+     G      +    W    +E   + V      +  +   +G H  QN      
Sbjct: 240 RIWPVSAHGPVAGGVYAADGWLVDDTEGEAVRVV----ELSTLPTLLGAHNWQNAAAAFA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                       + A++ F    G   R +          +++S   N  + + A++  
Sbjct: 296 ACKAAGIPAPAIVAAMASF---PGLAHRQQLVGTLDGVRFVNDSKATNADATEKALATF 351


>gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
          Length = 494

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 61  GHDASSLDLLPGGATAVVTTYAAIPKTNPELVEARRRGIPVVLRPAVLAKLMA------- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 114 --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 164 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALV 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 224 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 282

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 283 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
                + + Y  +P  + A ++    +   G+G R  V+     +   +++F  +     
Sbjct: 343 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEFGRAL 401

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L+G    ++ + +  ++ + Y      +   + ++   GDV+
Sbjct: 402 NAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASPGDVI 459

Query: 448 VVKSSNSC 455
           V   +   
Sbjct: 460 VTMGAGDV 467


>gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium
           'Dutch sediment']
          Length = 460

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 127/385 (32%), Gaps = 32/385 (8%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LVVV+  +             V +    L      A   S AT I ITG+ GK+TT  
Sbjct: 70  ADLVVVSPGIDLREPRFR----RVREAGIPLIGEVELAYRYSDATFIGITGTNGKSTTTT 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L          G+    +     +A      +  + EL    L  I       RP
Sbjct: 126 LIGAMLKQAGLPSYVAGNIGTPL---CRVAPSLAAGECVVAELSSFQLETIDEF----RP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  +AP HL  +  +E+   AKA IFE    +    +N DD     + A++    I
Sbjct: 179 RVALLLNLAPDHLDRYDQVEDYYRAKARIFENQRPSDFAVINADDPLVLQVSAQARGRRI 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +      A  +  +     +     +  + +         G H  +N L      +
Sbjct: 239 AFSRTRPLDTGAYVEDDQLMLALDGVREVICRKSE-----LKIQGVHNLENALAAGLAAA 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +          AL+ F   EG   R            I++S   N  ++  ++   +   
Sbjct: 294 VAGTPTTAIRIALTSF---EGLEHRLEFVAEIAGVRYINDSKGTNVGAVVRSLESFTN-- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  + + G   + G+ +          L    +  + L G     L+  L      
Sbjct: 349 -----PVVLIAGGRDKHGDFAP------LIPLVRERVKRLILIGEAAETLRRMLASVCPT 397

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
               +++       ++   G+VV++
Sbjct: 398 EVVSSLEEAVRRAAAAASPGEVVLL 422


>gi|226356422|ref|YP_002786162.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus deserti VCD115]
 gi|226318412|gb|ACO46408.1| putative UDP-N-acetylmuramate--L-alanine ligase (UDP-N-
           acetylmuramoyl-L-alanine synthetase) [Deinococcus
           deserti VCD115]
          Length = 476

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 146/444 (32%), Gaps = 57/444 (12%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           +R +  +    A+      GHD    A      ++V +  +  S   L         V  
Sbjct: 65  TRQLEREGISVAL------GHD---AAHMADVDVLVASEAVPKSHPELVAAREAGVQVRP 115

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT 152
            +  L    R       + + G+ GKTTT  M+ +AL        A +G       VP  
Sbjct: 116 RMGLLDELLRA---GPSVGVIGTHGKTTTTSMIAVALQGAGLDPSAFVGGI-----VPEF 167

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-----NFSGIEEIA 207
            +   +     + E+  S                AV T     H+       +  +EE  
Sbjct: 168 ASNARIGSGPFVAEVDESDRAFAELGCE-----TAVFTNAEDDHVGGNQATYWETVEEQH 222

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +  A     + ++  +    D    E L   +         ++G+++ AD++       +
Sbjct: 223 AGFARF---VSQSDRVLFCADWPGLETLCEGAAER-----LTYGQAEGADYRAVNLHPDA 274

Query: 268 EQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           E +   V  +G+ + +      G H   N L  L +  +   +   A  AL+ F    G 
Sbjct: 275 EGTSFTVHWRGEELGQARVGLPGVHNVLNALAALAVAHLYGGNFTQAAGALASFG---GP 331

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
           G+R++         +ID+ Y  N   + A     +  +    GRR+ V+          Q
Sbjct: 332 GRRWQRIGELNGALIIDD-YAHNATKVAA-----AVQAARQTGRRVRVVFQPHRYLRTQQ 385

Query: 387 S--------FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLF 436
           S           D   +L +   S   + G H   +   +    H  VHY      +   
Sbjct: 386 SWPRLADALMDADEVLLLDIAAASEAPIEGIHATLISTRMTEQGHTGVHYLPDRADVLQL 445

Query: 437 IQSSLVDGDVVVVKSSNSC-GFYR 459
           ++ +   GD++V   +       R
Sbjct: 446 LRDTAAPGDIIVTMGAGDVWKLSR 469


>gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
 gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
          Length = 518

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 157/515 (30%), Gaps = 69/515 (13%)

Query: 2   NPLWTFHDLL-----QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
            P  T   L      + I     G      V G+SIDSR+      F   KG  +    +
Sbjct: 12  TPTVTLELLANELRVRGIACRVTGGP--ALVRGMSIDSRATEMDNLFVC-KGAAFKP-AY 67

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI-----------PVFGVDDVLG--ALNKLAVAAR 103
           +  A+++GA   +  T   A    LS            P   V D+    AL    +   
Sbjct: 68  LTAAIRRGASAFLCQTQAAAPACDLSAPAELAAAAPDTPGLIVSDLRASMALIAPIIYGH 127

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------- 153
                 I+ +TG+ GKTT   ML   L +     + +GS     GV              
Sbjct: 128 PDRALRIVGVTGTKGKTTVTFMLRSILRAAGMEPSMVGSIEVDDGVERHESHNTTPEAPD 187

Query: 154 ----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIA 207
                R  VD    +  + +S           +   +     I   H+S       E+  
Sbjct: 188 LWRHLRNTVDSGRSVMIMEVSSQALKYDRVLGITLDVGCFLNIGSDHISPIEHPNFEDYL 247

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           ++K  IF+  E   T  +N D      +  ++   G     S  +  +AD +  +    S
Sbjct: 248 ASKLRIFDQSE---TAVVNLDTDHLVEVLKRAQTAGKLVTIS-SRRTDADLRADQISVAS 303

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E    ++  + +  E+     G     N L    +   L  D       LS      GR 
Sbjct: 304 EHIGFDIVERARRHEIALGMSGLFNVDNALAAAALARELGVDYTAIATGLSRAR-VPGRM 362

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R+R         +    Y  N  S +     +     + +   IAV G     G+ +  
Sbjct: 363 ERFRSP---DGRIVSLVDYAHNELSFRLLFESIES--EYPDRYVIAVFGAP---GDKAFD 414

Query: 388 FHIDLAEVLSLYNISHVWLS----GFHV----LALKDALPRSIHVHYSETMDGLFLFIQS 439
              +L  +        ++      G  V      L D  P           +        
Sbjct: 415 RRHELPRIAGKSADLLIYTEDDPGGERVEDICAQLADNTPTGTAFEIVVNREQAVERAFE 474

Query: 440 SLVDGD-----VVVVKSS-----NSCGFYRLINLL 464
           +    +     +++ K        S G+ R+ + L
Sbjct: 475 AARSHEGPALVLLLAKGDEHRQRRSDGYARIASDL 509


>gi|167614204|gb|ABZ89707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 439

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IIAITG+ GK+T   M+T    +        G+    +     L  +    D  
Sbjct: 102 REISTPIIAITGTNGKSTVATMITKIAQNSGYNALLGGNIGCPV-----LNLLHQKRDLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++  I+VI  I   H++ +  G E+    K  I+ G E    
Sbjct: 157 IIELSSFQLEN----TFNLKSKISVILNIHEDHINRYPQGFEQYKKTKLSIYHGAE---I 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N  D   ++   K+     K   SFGK KN+D+ + K       +   +  + + + 
Sbjct: 210 CIMNSHDQLNDIFDDKN-----KHYISFGK-KNSDYYIYK-----NDTSFILCCKNEKIL 258

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   GYH   N+L+++ I   +       I  L  F        R++   N+    
Sbjct: 259 NSSELLLSGYHNYNNVLVSIAIADAMKFSRQYTIYTLKNFSSLP---HRFQTIQNKNNID 315

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S + N  S + A++ L++     +G    +LG   + G  +      L +  +  N
Sbjct: 316 WINDSKSTNVNSTQVALNSLTK-----KGTIHLLLGGDSKSGNFNI-----LKKYFNKKN 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G   + +     +     Y E +    L I  ++  GD V++
Sbjct: 366 I-KIYCFGKDGVKIFKICKKKS--IYVENLKQAMLLISKTVKSGDTVLL 411


>gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
 gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
          Length = 523

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 152/473 (32%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNH 146
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVNDV 148

Query: 147 I------------GVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           I              P +L      R  VD       + +S     +     +   +   
Sbjct: 149 IGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
             I+P H+         +    K ++   L  +    +N + + F E+  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQL---LVNSRKCIINAETAHFNEVYAAATTTTNPDS 265

Query: 247 IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +            DF+    +   +++  ++              +     +G  
Sbjct: 266 IYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K +       GR +  R   +     ++   Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKNHG----MVVVDYAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A ++ +         + I V+G     G+   S     +E LS Y     +L     
Sbjct: 381 SMMALMNFMQS--EFNNPKIIVVVGAP---GDKGVSRRPGFSESLSAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSETMDGL--FLFIQSSLV---DGDVVVV--KSS 452
           G     ++ + +   I     +    L     I  ++      DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGA 487


>gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus haemolyticus JCSC1435]
 gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 449

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 125/346 (36%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIAITG+ GKTTT  ++       + T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAITGTNGKTTTSSLIGDMFKKSRLTGRLSGNIG---YVASKVAQETSPNEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +       RPHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGVE----QYRPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTENDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + + +        
Sbjct: 222 N----YHQRHLIESENLKAKTLY-FSTQQEVDGIYIKDGFIVYQGIRI-INIDD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASILAGVPIKAIIDSLTTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFKQ--------PIVWLCGGLDRGNDFDEL------IPYMKNVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +   V  +  ++     +Q  +   DVV++
Sbjct: 373 VVFGQTQEKFAKLGNSQGKLVVKATDIEDAVKKVQDVVEPNDVVLL 418


>gi|24111533|ref|NP_706043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 301]
 gi|62900692|sp|Q83MF9|MURD_SHIFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24050291|gb|AAN41750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 301]
 gi|281599450|gb|ADA72434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2002017]
 gi|332762278|gb|EGJ92545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2747-71]
 gi|332762649|gb|EGJ92914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           4343-70]
 gi|332764934|gb|EGJ95162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-671]
 gi|332768878|gb|EGJ99057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2930-71]
 gi|333009070|gb|EGK28526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-218]
 gi|333022251|gb|EGK41489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-304]
          Length = 438

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L+ L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LVRYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           cibaria KACC 11862]
          Length = 447

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 135/392 (34%), Gaps = 41/392 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A L  V+  +       +IPV     D    +      A+   +   IA+TGS GKTTT 
Sbjct: 59  ALLTGVDLVVKNPGIPYTIPVLVAAKDAGIPIVVEVAVAQKYIRGEWIALTGSNGKTTTT 118

Query: 124 EMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+   L +           G+    +       R   D D  + EL    L  +     
Sbjct: 119 EMIAAVLRTQATSDHQIVVAGNIGTPVSEVAPSLR---DTDTLVTELSSFQLMGM----P 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P+IA+IT I  +HL      E   +AK  I +       + +NYD + +  L  ++ 
Sbjct: 172 EAKPNIAIITNIFASHLDYHGSRENYVAAKMGITKNQTADDYLVINYDRAEWRELAQQTA 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLM 298
           A    T+           +L   +  + +   ++  QG+ +         G H  +N L+
Sbjct: 232 A----TVVPVS-------RLDNSEDGAYEHDGQLYYQGELVMAAAELGVPGDHNVENALV 280

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +  +     +   +AL  F   E    R +         + ++S   +  + + A+S
Sbjct: 281 AIAVGKLRHVPTNDIAEALRRFTGVE---HRLQFVGTFDGRQVYNDSKATDIEATEMALS 337

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
             +          + +L    + G+        +       ++  + + G     +    
Sbjct: 338 GFTA--------PVVLLAGGLDRGDDQMRLLQAM-----KAHVKALIVFGQTADKVAAVG 384

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +I V ++                GD+V++
Sbjct: 385 EALAIPVVHATDAPAAVAPAFELSEPGDIVLL 416


>gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 163/489 (33%), Gaps = 77/489 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQTTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P    R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFG-----------------KSKNADFQLRKWKQCS-EQSWMEVQ 275
           +  A +     ++IY F                   S+ AD    ++      +    + 
Sbjct: 253 VYAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALN 312

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + G         IG     N    +    +   D   A+  ++      GR + ++   +
Sbjct: 313 IGG---HYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHFQVPGH 368

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +   Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 369 G----TVYVDYAHNYASMKALLSFLK--RSYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALP-----RSIHVHYS-ETMDGLFLFIQSSLVDGD 445
           L+         +          + + +        + VH   +  + +   I++S    D
Sbjct: 420 LTELATEAFLTTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKAS-GPKD 478

Query: 446 VVVV--KSS 452
           VVVV  K +
Sbjct: 479 VVVVAGKGA 487


>gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU144]
          Length = 449

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDIFQKSVLTGRLSGNIG---YVASKVAQEVKSDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 166 ELSSFQLLGIEE----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 222 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 373 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 519

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++ +A + GA   V         G  ++ V  V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPEGKGMHALIVSNV 93

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN-- 145
              +  L+        +    +IA TG+ GKTT+   L   L  +     A   S ++  
Sbjct: 94  TKAMSLLSAAF-YRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVV 152

Query: 146 ----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +  P +L      R  VD       + +S     +     +   +    
Sbjct: 153 GPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFL 212

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
            I P H+        E+    K ++     K     +N   D F E+  A +      +I
Sbjct: 213 NITPDHIGVNEHPNFEDYLHCKLQLMVNSRK---CIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 248 YSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHM 292
           Y F ++        +  DF+    +    ++  ++  +  +   +          IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +                 G+            ++D  Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQD---CYDGIKNVTIPGRMETLTTAHHGTVIVD--YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG 408
           M A +S +         + I V+G     G+   S     +E LSLY  + V+L     G
Sbjct: 385 MIALMSFMQ--KEFDSPKIIVVVGAP---GDKGISRRAGFSESLSLY-ANQVFLTTDDPG 438

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KSS 452
                 + D +   I     + M        +   I+ +  D DVV++  K +
Sbjct: 439 FEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGA-KDDDVVLICGKGA 490


>gi|330895231|gb|EGH27569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 161

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   ++  +  L+   P +G   R    +      +ID++YNANPAS+ AA+ +L+
Sbjct: 1   ASCAMGVPLEGIVTGLNNVQPVKG---RAVAQIASNGTRVIDDTYNANPASINAAVDILT 57

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A    
Sbjct: 58  GFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAG-KVSALYAVGPLMTHAVSAF--G 110

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H ++  +   L   + +       +++K S S     ++  L
Sbjct: 111 EHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 153


>gi|228922665|ref|ZP_04085965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837094|gb|EEM82435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 130/354 (36%), Gaps = 43/354 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSL--VDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D     +++ +   DGDVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAV--VKAYVHSKDGDVVLL 422


>gi|218753875|ref|ZP_03532671.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           GM 1503]
 gi|289762314|ref|ZP_06521692.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
 gi|289709820|gb|EFD73836.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
          Length = 495

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 112/312 (35%), Gaps = 26/312 (8%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E   S    +++      PH+AVIT I   HL  +  +E   +      E +   
Sbjct: 166 DCFVAEADESDGSLLQYT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPG 220

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQG 278
           G + +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  
Sbjct: 221 GALVVCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 279

Query: 279 KSME------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +         +     G HMA N L  L     + A  D  +  L+ F     R +    
Sbjct: 280 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 339

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    + + Y  +P  + A ++    +   G+G R  V+     +   +++F  + 
Sbjct: 340 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEF 398

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                      VL +Y      L+G    ++ + +  ++ + Y      +   + ++   
Sbjct: 399 GRALNAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASP 456

Query: 444 GDVVVVKSSNSC 455
           GDV+V   +   
Sbjct: 457 GDVIVTMGAGDV 468


>gi|146276742|ref|YP_001166901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166224764|sp|A4WQD2|MURD_RHOS5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145554983|gb|ABP69596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 465

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 129/401 (32%), Gaps = 47/401 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARLRSKATIIAIT 114
             ++V +  +  +     PV          VD+ +G   +               ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   L+   +     G+    +           D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILAESGRPTQMAGNIGRGVLD----LDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F          +  D+     
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGLY 237

Query: 235 LKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
           L  + S A     +      +    +   W   + + ++    +G+      +  +    
Sbjct: 238 LAGQLSVAPEDDRVIRISAGQK--LERFGWAVFARKGFLAEWRKGRQMASIDLRAMPGLP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN          L        +AL  F   +G   R +    +     +++S   
Sbjct: 296 GAHNHQNACAAYAACRTLGLAPRQIEEALGSF---KGLPHRSQLVGERNGVRFVNDSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S   A+    +I     G     LG   + G  +   H+D         +   +L G
Sbjct: 353 NVDSAAKALQAFPKIRWIAGG-----LG--KDGGIAALRPHLD--------AVVKAYLIG 397

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    +  + H    ETMD   +        G+VV++
Sbjct: 398 HSARDFALQMGATDH-EICETMDRAVVRAAEEAQPGEVVLL 437


>gi|94309648|ref|YP_582858.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353500|gb|ABF07589.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 856

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 134/393 (34%), Gaps = 46/393 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A++G+ GKTTT  ++T  L+S        G+   +I     
Sbjct: 455 EAIISTMFADGDDGRIPVVAVSGTNGKTTTVRLITHILASNGLRMGMTGTDGVYIQGERI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +  DVD  +FE   +  G +R      R  +AV+T +    HL  
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFE--TARGGLLREGLAFDRCDVAVVTNVGEGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              S +E++A  K+ I + +   G   LN  D     +            +  G    A 
Sbjct: 573 SYISTVEDLAVLKSVIVQNVAPHGMAVLNAADEMVARMADACPGTVTFFAHDAGLPTMAL 632

Query: 258 FQL--------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +            +  + +   EV++    + +  +G      +N + ++     L  D
Sbjct: 633 HRAQGRRVVFVEGDQIVATEGDTEVRIPLADIPLTRNGSIGFQVENAMSSIAAAWALGID 692

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                +AL+ F              +    TLI + Y  NP +++A  + +  +      
Sbjct: 693 WAVIRRALATFVNDAATAPGRFNVFDFKGATLIAD-YGHNPDAIQALCNAVETMPSK--- 748

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALP 419
           RR+ V+      G+          ++L       V L           G  +  L++ L 
Sbjct: 749 RRVVVISG---AGDRRDEDIRKQTQILGGV-FDEVVLYQDQCQRGREDGEVLALLREGLQ 804

Query: 420 RSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            +    + E + G         S L  GD+ ++
Sbjct: 805 GAQRTSHVEEIRGEFVAIDTALSHLQPGDLCLI 837


>gi|229086477|ref|ZP_04218649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
 gi|228696794|gb|EEL49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
          Length = 450

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 122/350 (34%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SKA  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISKAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQTAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      EE   AKA IF+   K  
Sbjct: 163 IVVTELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTKAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L   S    +    +      A  +        E+    V ++    
Sbjct: 219 YSVINADDADVMALSENSKGQKVLFSATKVIEDGAYIKEDALYFKGEK---VVDIKD--- 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +     +  I  L  F   + R +      N+ F+  
Sbjct: 273 ---IVLPGKHNLENILAAMSIAKLSGVANEAIIAVLKRFTGVKHRLEYVTTLNNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q         I + G +    E       DL       ++
Sbjct: 328 -NDSKATNMLATEKALSAFTQ-------PTILLAGGLDRGNEF-----DDLIPYFE--HV 372

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   + ++       +   DGDV+++
Sbjct: 373 KAIVAYGQTAPKLVKAAQKAGLDMIETVDNLEEAVEKAYALSADGDVILL 422


>gi|303273394|ref|XP_003056058.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545]
 gi|226462142|gb|EEH59434.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545]
          Length = 594

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 124/327 (37%), Gaps = 41/327 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           R   +  ++A+ G+ GKTTT  M+ + L  + +  T    G+     G    +       
Sbjct: 169 RTSKRKNVVAVAGTHGKTTTASMVAMVLLENDLDITALVGGNVRQFPGGENAIG------ 222

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G   L  +   +  FL   + P IAVIT +   H   F  + ++  A  +    +E  
Sbjct: 223 GSGNLFLIEADEYDGAFL--GLSPQIAVITNVEFDHPDLFKCLRDVRVAFKKFTRRIETG 280

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEV-QLQG 278
           G+I +  DD+      +K+ +  ++ + ++G ++N  ++    K      +   V +   
Sbjct: 281 GSIVICGDDANSSTFMSKACSSKLE-VVTYGFARNNLWRAMNVKSNTGGGTTFTVSRADV 339

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSIL--TADVDTAIKALSV----------------- 319
           K  +V     G H   N L  +   S +    D   A  + S                  
Sbjct: 340 KKQDVSISLPGRHNVLNALAAIATASCIRDACDASCAAPSPSQRGCHRMKNLLCFDPVMF 399

Query: 320 --FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
              +   G  +R +     G   L D+ Y  +P ++KAAI  + +  P     R+ VL  
Sbjct: 400 TALNNYRGIARRMQFVGFFGSCALYDD-YAHHPTAIKAAIGAMREQYPEA---RVTVL-- 453

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404
             E    S++F +  + V +L  +  V
Sbjct: 454 -FEPHTFSRTFVMLRSFVAALSEVDRV 479


>gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 494

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 61  GHDASSLDLLPGGATAVVTTHAAIPKTNPELVEARRRGIPVVLRSAVLAKLMA------- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 114 --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 164 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALV 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 224 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 282

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 283 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
                + + Y  +P  + A ++    +   G+G R  V+     +   +++F  +     
Sbjct: 343 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEFGRAL 401

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L+G    ++ + +  ++ + Y      +   + ++   GDV+
Sbjct: 402 NAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASPGDVI 459

Query: 448 VVKSSNSC 455
           V   +   
Sbjct: 460 VTMGAGDV 467


>gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [marine bacterium
           HP15]
          Length = 446

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 121/370 (32%), Gaps = 43/370 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I+AITGS GKTT   ++     +  +  A  G+          L  +    D  + E
Sbjct: 108 DAPIVAITGSNGKTTVTTLVGEMAKAAGRNVAVGGNIGTP-----ALDLLGQGADLYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L  L     A +  ++  H+  +        AK  IF G +      +N
Sbjct: 163 LSSFQLETTDELNALA----ATVLNLSDDHMDRYPNKMAYFQAKQRIFRGCKN---AIVN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD+    +     A        FG  +  + +    +   + +W+        +     
Sbjct: 216 LDDALSTPM-----ARDNLRFLCFGFHR-VNPETFSTRDDDQGTWITFGFDNLLLASELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G+H   N++  L +       +D  ++    F    G   R            I++S 
Sbjct: 270 LMGHHNISNVMAALALGHAAGLPMDVMLRVAREF---PGLPHRCEFVRRLNDVDFINDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AAI  L+      +G+ + + G   +  + +        E     +   V L
Sbjct: 327 GTNVGATVAAIESLA----PDKGKVVLIAGGDGKGADFTA------LEAPIALHCRAVLL 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G    A+ D L   I VH   ++           + GD V++    +S           
Sbjct: 377 IGRDAPAIADVLGSGIPVHRVGSLAEAVSRSAELAMPGDRVLLSPACASFDMFRDYLDRG 436

Query: 455 CGFYRLINLL 464
             F  L+  L
Sbjct: 437 DQFRSLVEAL 446


>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 453

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 96/264 (36%), Gaps = 22/264 (8%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+TG+ GK+TT  +++  L+S    Y   G+        ++  R     D  + EL
Sbjct: 104 LNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIG------VSALRAKASKDGYVLEL 157

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  ++  T      IAV+  I P HL     +    +AK++IF+ ++K     +N 
Sbjct: 158 SSFQLDLVKTFTA----KIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKKSYAVINI 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           D+ +   +           +  F  +K       +   K        ++           
Sbjct: 214 DNDYCRKIFMLLQQEQRIKLIPFSVTKILENGILVVDDKIKDNDISYKLSFN-------K 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H  +N+  +  +  I+  +    I+++S F        R +   +    +  ++S
Sbjct: 267 NLQGLHNYENIAASYAVAKIIGVEPKKIIESISSFQSLP---HRMQYIGSINNISFYNDS 323

Query: 346 YNANPASMKAAISVLSQISPHGEG 369
              N  S   +I  L  I     G
Sbjct: 324 KATNAISAVQSIKALDNIYWLAGG 347


>gi|42783006|ref|NP_980253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 10987]
 gi|60390050|sp|Q732F6|MURD_BACC1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42738933|gb|AAS42861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10987]
          Length = 450

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNXTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKVL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVGDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q +         +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|315224116|ref|ZP_07865956.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea
           F0287]
 gi|314945849|gb|EFS97858.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea
           F0287]
          Length = 450

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 119/349 (34%), Gaps = 44/349 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +      +A+ G+ GKTTT  +L   L       A + ++   I        +
Sbjct: 101 RSEVLGFITKNTFCLAVAGTHGKTTTSSILAHLLVEAG---ASVSAFLGGIAENFNSNLV 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               ++ + E        +R     + P+IA IT++   HL  +   + +     E    
Sbjct: 158 LKGSEYTVAEADEFDRSFLR-----LSPNIACITSMDADHLDIYGDKQHLIEGFREFAGK 212

Query: 217 LEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           ++  G++ + N  D   E               ++G   NAD+  +     +     +  
Sbjct: 213 IKPGGSLIVRNGLDIEGE---------------TYGLEDNADYTFQNITVKNGIYHFDFH 257

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G    +      G H   N L  + +        +  +  L+ F   +   +R+   +
Sbjct: 258 YKGGVYKDYTLLKPGRHNLLNTLAAVSMAVKAGFAPEKLLPHLATFKGVK---RRFSYII 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F  ID+ Y  +P+ + A    + ++ PH    +  V      +   ++ F  D A+
Sbjct: 315 KEDNFAFIDD-YAHHPSEINALFQAVEEMYPHTP--KTIVF--QPHLFTRTRDFLDDFAK 369

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
                    +L +Y    + + G     L D +     +    +   L 
Sbjct: 370 SLSQFDDVVLLDIYPARELPIEGITSQVLLDKVTAKQKILV--SKAELI 416


>gi|289209363|ref|YP_003461429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
 gi|288944994|gb|ADC72693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
          Length = 448

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 122/345 (35%), Gaps = 33/345 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +IAITGS GK+T   ++   L++  +  A  G++         L  +   V+  + E
Sbjct: 106 QAPVIAITGSNGKSTVTALVGEILTAAGRKVAIGGNFGTP-----ALDLLDPVVEVYVLE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      +  ++P  A I  I+P H+  +  +     AKA I   L++     LN
Sbjct: 161 LSSFQL----ERSEQLKPDGAAILNISPDHMDRYPDLAAYIQAKARI---LDRAARGVLN 213

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD +   L           + SFG   +A      +   + ++  ++    + +     
Sbjct: 214 RDDPWLRELP----LPAGLRVVSFGL--DAPLAATDFGVNTGEAEPDLVRGEERLLSTAR 267

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  L +       +    +AL+      G   R +          I++
Sbjct: 268 LRLRGQHNWANALAALALAWPWLESLQARSEALAALADFAGLPHRSQWIARVAEVDYIND 327

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AA+           G  + + G   +  + S      LA+ +    +  V
Sbjct: 328 SKGTNVGATLAALR-------GTPGPLVLIAGGQGKGQDFSP-----LADYV-PGKVRGV 374

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     +  AL   + V   + M        +    GD V++
Sbjct: 375 VLLGEDAPLIARALASVVPVQRVDDMTAAVAQAAAWAQPGDTVLL 419


>gi|114763027|ref|ZP_01442457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544351|gb|EAU47359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           HTCC2601]
          Length = 467

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 116/382 (30%), Gaps = 42/382 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV     +                  ++A+TGS GK+TT  ++   L S  + 
Sbjct: 89  AAWEAGVPVDNDIGLFFRSFGSGAWEMFDQPPKVVAVTGSNGKSTTSALIHHILQSAGRG 148

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G+    +         P +    + EL        R LT    P +AV T ++P H
Sbjct: 149 SQLAGNIGRGVLDI----EPPEEGGVVVLELSSYQTDLARALT----PDVAVFTNLSPDH 200

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKN 255
           L    G+    +AK  +F          +  D++    L  + +       +     ++ 
Sbjct: 201 LDRHGGLGGYFAAKRRLFAEGGPDRC-VIGVDEAEGRYLANQLAEGAVDDRLIRVSAARK 259

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  W   + + ++    +G+      +  V    G H  QN          L    
Sbjct: 260 --LSGPGWDVFARKGFLTEWRKGRQVASIDLRQVRGLPGAHNHQNACAAYAAARALGVAP 317

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  + FH  EG   R +   + G    +++S   N  +   A+    +I     G 
Sbjct: 318 RVI---EAAFHSFEGLPHRSQIVADAGGVVYVNDSKATNVDAALKALQAFPRIRWICGGL 374

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---WLSGFHVLALKDALPRSIHVHYS 427
                  M E G           E L+     HV   ++ G         L   +     
Sbjct: 375 -------MKEGG----------LEALAP-GFDHVAKAYVIGREAAGFALGLA-GVEAEVC 415

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
             MD       +    G+ V++
Sbjct: 416 TDMDTAVARAMADAEPGETVLL 437


>gi|229162848|ref|ZP_04290805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
 gi|228620730|gb|EEK77599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
          Length = 450

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+  +++    +  G K ++S  K       ++            +  +G+ +
Sbjct: 219 YSVINADDA--DVMALSVNTKGQKVLFSTTKEIEDGAYIKDNA---------LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTLNNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFAQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T++       +   DGDV+++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAGKAGLDIIESVDTLEEAVGKAYAHSSDGDVILL 422


>gi|62178693|ref|YP_215110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224581969|ref|YP_002635767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|75484866|sp|Q57TD2|MURD_SALCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62126326|gb|AAX64029.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466496|gb|ACN44326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322713146|gb|EFZ04717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 438

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQEPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LTRYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--IAQQTETMEEAMRLLAPRVQPGDMVLL 410


>gi|83309265|ref|YP_419529.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|82944106|dbj|BAE48970.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 465

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 132/409 (32%), Gaps = 41/409 (10%)

Query: 80  SLSIPVFGVDDVLGA--LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKT 136
             ++P       L A  L +  + ARL + + + I I G+ GK+TT  ML   L    + 
Sbjct: 79  EDTVPDVVAARALKAPMLTRPQLLARLFNASELPIGIAGTSGKSTTTGMLGWILERCGRR 138

Query: 137 YACI-GSYNNHIGVPLTLA--RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
              + G+   +   P +     +  D    + E+  S  G I        P IA++  IA
Sbjct: 139 PTVMNGAVMKNFVRPDSPFSSALVGDGPAFVAEVDESD-GSIANYA----PRIALVNNIA 193

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H      ++E+    A+      K     LN D+   E     +     + +    + 
Sbjct: 194 LDH----KSMDELRRLFADFTA---KARVAVLNLDN--GETAALAATLPADRVVTYSLED 244

Query: 254 KNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             AD          +      +   GK+M V     G H   N L  L         ++ 
Sbjct: 245 PGADLWAENVSPAPDGIAFTARTRDGKTMPVKLLVPGRHNVSNALAALAGALAAGLGLED 304

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A  AL  F    G  +R      +G  T+ID+ +  NP  + A ++ L        GR +
Sbjct: 305 AATALGEFS---GVRRRLETVGTKGGVTVIDD-FAHNPDKISATLATLHD----WPGRLL 356

Query: 373 AVL--GDMCEMGELSQSFHIDLAEVLSLYNI----SHVWLSG-----FHVLALKDAL-PR 420
            +        +  +   F    AE L   ++      V+  G          L +A+  R
Sbjct: 357 VMFQPHGFGPLRLMKDEFVACFAERLGPDDVLVMPDPVYFGGTVDRSVTSAHLAEAITAR 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                           +      GD +VV  +           +L    
Sbjct: 417 GRRALAVPERAACGDALVEMARPGDRIVVMGARDDTLSLFAAEILARLK 465


>gi|269926713|ref|YP_003323336.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790373|gb|ACZ42514.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 474

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 133/388 (34%), Gaps = 49/388 (12%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              ++ +  L ++ +  R    A I AITGS GK+TT   L       +      G+   
Sbjct: 98  LARENGIPVLMEMNLFWRY-CPAPITAITGSKGKSTTTSWLGHISKLWRPDTVVAGNLRV 156

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                L++     +    I EL    L    F      PH++ IT I+  HL+ +   E 
Sbjct: 157 S---ALSMLPQISEDTPVILELSSWQLE--AFEVGGEAPHVSCITNISYDHLNRYPSFEA 211

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--------NAD 257
             ++K  I+   + T     NYDD           A     +  F +S         + D
Sbjct: 212 YYNSKRWIYRNQKTTDYAVFNYDDPIVSRFVEDCLA----QVRWFSRSSHVKPGGYIDND 267

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +     +  S +  ++V              G H   N L    + S +    +  ++ L
Sbjct: 268 YIYLVDETGSTRKLLQVH--------ELQLPGEHNRMNALAAAVLASAMNIPDEFIVEGL 319

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +G   R            I+++ +  PAS  AA+  +       EG  + + G 
Sbjct: 320 RTF---KGLPDRLELVSVIDGVKYINDTTSTVPASTIAALKAV-------EGEVVLLAG- 368

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLF 434
               G        +LA+ +    +  V L G     L+ A+ +      V    +++   
Sbjct: 369 ----GASKNVPFDELADFICQKKVRVVLLEGSATADLQTAINKRCPELIVGTFSSLESAL 424

Query: 435 LFIQSSLVDGDVVVVKSSN---SCGFYR 459
              +S    G  V++  S    S G +R
Sbjct: 425 EAARSVARPGHTVLL--SPACASFGMFR 450


>gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
 gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
          Length = 464

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 123/407 (30%), Gaps = 46/407 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPV------FGVDDVLGALNKLAV---AARLRSKA 108
             A    A L+V             + V        VD+ +G   +              
Sbjct: 61  AGAFDDVARLIVSPGIPHLYPAPNPVIVAAQDAGVAVDNDIGLFFQSFATQDWDGFDQMP 120

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIA+TGS GK+TT  ++   L    +     G+    +          +D +  + EL 
Sbjct: 121 KIIAVTGSNGKSTTSALIHHILKHAGRPTQLAGNIGRGVLDI----EPAIDGEVVVLELS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                  R LT    P IAV T ++P HL   +G+    +AK  +F          +  D
Sbjct: 177 SYQTDLARNLT----PDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPD-RAIIGVD 231

Query: 229 DSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282
           ++    L  + S       +      +        W+  + + ++    +GK      + 
Sbjct: 232 EAEGRYLAGQLSEGAADDRVIRVSVDRK--LSGPGWQVFARKGFLSEYRKGKQVGSIDLR 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V    G H  QN          L         A + F    G   R +          +
Sbjct: 290 GVTGLPGAHNHQNACAAYAACRSLGFAPKVIEAAFASFG---GLPHRSQTIGELRGIRFV 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S   A++    I     G     L     +G L+               + 
Sbjct: 347 NDSKATNVDSAVKALAAFRNIRWICGG-----LEKDGGLGVLTAPLET----------VR 391

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++ G        A+   +      TMD       +    GDVV++
Sbjct: 392 KAYVIGREAAQF--AMKLGVEAEVCGTMDVAVARAVAEAEAGDVVLL 436


>gi|325959935|ref|YP_004291401.1| Mur ligase middle domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331367|gb|ADZ10429.1| Mur ligase middle domain protein [Methanobacterium sp. AL-21]
          Length = 486

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/504 (16%), Positives = 161/504 (31%), Gaps = 81/504 (16%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDF 56
           M  L T + L   I G   G  P   + GI        P +A        KG        
Sbjct: 1   MTELTTSY-LANKIDGKLTG--PDIVIQGIFTFLNHAKPGDAVIRHWIDEKG-------- 49

Query: 57  ILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATII 111
           +  A  +G   VV      D V +   L  P+      ++  A        +    +  +
Sbjct: 50  VEIARNRGVSCVVTQNPKGDAVKTAQELDFPLIITPKIELANAFALRWSIEKFAPGSIRV 109

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYAC------IGSYNNHIGVPLTLARMPVDV----D 161
            +TG+ GK+TT  M+   L+                +      V   ++R         D
Sbjct: 110 VVTGTNGKSTTTHMIQNILNHAGYNCYTNTDSKSEFNTLIDPVVSDQISRFKAKTKKPID 169

Query: 162 FGIFELGMSH------LGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             + E+          + +  +L T  V+P + V+T I   H+   + IEE  +      
Sbjct: 170 AMVVEVSEVQGWMDKLMKDHAYLMTDAVKPDVLVLTNITMDHIGLINSIEETYAEIYGAL 229

Query: 215 EGLEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSE 268
             +EK        LNYDD     +  +   +   +I S G  +   N D  ++      E
Sbjct: 230 AAVEKSCQNNYAVLNYDDPLLRKMAGEI--VTCPSIISHGSVEPDFNPDLTVKSDGIHHE 287

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E+ L+ + +         H  QN +  +G    L  D        +         +
Sbjct: 288 D---ELFLKMEDLPFKSK----HFLQNTMAAIGACLALNIDTSAIK---AGILSYSPLNR 337

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG------ 382
           R+     +    LI + +  NP  + A I   S++S        AV G   E+       
Sbjct: 338 RFSILYQE---PLIIDDFAHNPDGITATIKSASEMSEGTLIILFAVRGSRGEVINRLNAE 394

Query: 383 ELSQSFHI-----------DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
            L+ +              ++ + L+  + S + +    +          +   + E ++
Sbjct: 395 ALASALQAVDYSLIITSSSEVVDELNTVHASEIEVVRKVMD------EHKLEHTFKEELE 448

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC 455
               +  ++    D +++  +   
Sbjct: 449 DALNYTLNTAKKEDTILLIGAQGM 472


>gi|310765303|gb|ADP10253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Erwinia sp. Ejp617]
          Length = 450

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 40/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDRWVIAVAGTHGKTTTAGMTAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E               V   P 
Sbjct: 124 ILQACGYEPGFVIGGVPGNFEVSANLGKSP----FFVIEADEYDCAFFDKRAKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   +  +  I      +   +   G I L   D+  + + +       +
Sbjct: 180 TLILNNLEFDHADIYDDLRAIQKQFHHLVRIVPGQGKIILPEHDANLKQMMSMGCWSEHE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +N+ +Q++  K   + S  EV L G+ + EV    +G H  +N +M +    
Sbjct: 240 AV-----GENSCWQVK--KLSPDASCWEVMLDGERVAEVKWSLVGEHNMRNGMMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVKPEDAGRALNDFINAR---RRLELRGESNGIKVYDD-FAHHPTAIHATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
             G  R +AVL      M  MG         L           V+L   H     V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGISKDDLAPALGR------ADEVFLYQPHHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           DA  +    H+S  +D L   I      GD ++V  SN  GF  +   LLE  
Sbjct: 401 DACIQ--PAHWSADIDTLVEAIAKVAHPGDTILVM-SNG-GFGGIHQKLLERL 449


>gi|306834166|ref|ZP_07467286.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus bovis ATCC
           700338]
 gi|304423739|gb|EFM26885.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus bovis ATCC
           700338]
          Length = 443

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 129/386 (33%), Gaps = 50/386 (12%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V++                + T   + G+ GKT+T  +L+  L +I  T   IG    
Sbjct: 81  YAVNNGFKFKRYHEFLGDFMRQFTSFGVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG-- 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                    R   + ++ +FE       E +       P  ++IT I   H   F  I++
Sbjct: 139 -------TGRGSANSNYFVFE-----SDEYQRHFMPYHPEYSIITNIDFDHPDYFKSIDD 186

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  A  +  + ++K   +FL  DD++   + + +       IY +G     DF      +
Sbjct: 187 VFDAFNDYAKQVQK--ALFLYGDDAYLRKITSDAD------IYYYGFKDTDDFVAYDIVR 238

Query: 266 CSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +  S  +V+   + +        G H   N    +  + I   D++   + +  F   +
Sbjct: 239 TTNGSVFKVRHGDEELGSFHLPAFGLHNILNATAVVANLYIAGIDMELVAEHMKTFAGVK 298

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAV 374
               R          T+ID+ +  +P  + A +    Q            PH   R IA+
Sbjct: 299 ----RRFTEKVINNTTIIDD-FAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIAL 353

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           L +       + S +     +  +Y     V      V  L   + +S  V   E +  L
Sbjct: 354 LDEFTNALNQADSVY-----LAPIYGSAREVDHGDVKVEDLASKIQKSAKVISLENVSPL 408

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYR 459
                    D  + V   +     Y 
Sbjct: 409 LDH------DSAIYVFMGAGDIQMYE 428


>gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 114 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASKVAQEVKSDEYLIT 170

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 171 ELSSFQLLGIEE----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 227 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 275 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 332 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 377

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 378 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
 gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 114 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASNVAQEVKSDEYLIT 170

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 171 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 227 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 275 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 332 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 377

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 378 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|189462924|ref|ZP_03011709.1| hypothetical protein BACCOP_03625 [Bacteroides coprocola DSM 17136]
 gi|189430351|gb|EDU99335.1| hypothetical protein BACCOP_03625 [Bacteroides coprocola DSM 17136]
          Length = 458

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 126/369 (34%), Gaps = 35/369 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   L      + + G+ GKTTT  M    L        C            T   +
Sbjct: 101 RAQVLGMLTRTEKGLCVAGTHGKTTTSTMTAYLLDHS--HVGCNAFLGGISKNYHTNLLL 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               DF + E       E     H + P+  VIT     HL  +   E    +  +    
Sbjct: 159 SDKSDFVVIEA-----DEFDRSFHWLTPYATVITATDSDHLDIYGTHEAYVESFQKYTSL 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++  G + +       + +          T+Y++   +  DF     +  + + + +   
Sbjct: 214 IQPEGYLII------KKGIDLNPAVQPGVTVYTYSTEEG-DFHAENIRIENGEIYFDFIS 266

Query: 277 QGKSMEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              +++ +  G+  Y   +N +  + +  I  A  +   +A+  F   +   +R+   L 
Sbjct: 267 PLGNIKGIQLGVPVYVNIENGIAAMALAQIGGATNEEIKQAMPGFRGVD---RRFDFKLK 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                 I + Y  +PA +K +IS +  + P  + +  AV      +   ++ F+ D A+ 
Sbjct: 324 NDRIVFISD-YAHHPAEIKQSISSVRMLYP--DKKITAVF--QPHLYTRTRDFYKDFADS 378

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                   +L +Y    + + G     + D L   I      + + L   I+      DV
Sbjct: 379 LSLLDEVILLDIYPARELPIEGITSKLIYDNLRPDIEKSMC-SKENLLEVIKH--KKTDV 435

Query: 447 VVVKSSNSC 455
           ++   +   
Sbjct: 436 LITLGAGDI 444


>gi|319946445|ref|ZP_08020682.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
 gi|319747413|gb|EFV99669.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
          Length = 444

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 137/369 (37%), Gaps = 56/369 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  +L+  LS+I  T   IG             R      + +FE    
Sbjct: 106 MGVAGAHGKTSTTGILSHVLSNITDTSYLIGDG---------TGRGSKGAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+G+E++ +A  +  + + K   +F+  +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQISK--ALFIYGEDP 209

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               + A +       IY +G + +  DF      + +  S   V  +G+ + +      
Sbjct: 210 ELRRITANA------PIYYYGFEEEGNDFVASDLLRSTTGSTFTVHFRGEDLGQFQIPSF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++ I   D+D   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVVGLLYIAGFDLDLVREHLKTFGGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
           +P  + A +    Q            PH   R IA+L +  +    + + +  LA++  S
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFADALNQADAVY--LAQIYGS 376

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG- 456
              + H       V  L+  + +   V  +E +  L         D  V V   +     
Sbjct: 377 AREVDH---GDVKVEDLEAKIIKKSGVITAENVSPLLDH------DNAVYVFMGAGDIQT 427

Query: 457 ----FYRLI 461
               F RL+
Sbjct: 428 YEYSFERLL 436


>gi|205355653|ref|ZP_03222423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346430|gb|EDZ33063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 450

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 54  KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 88

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 89  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 148

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  ++     +     + T I   HL      E    AK   F   
Sbjct: 149 KKCDFFIMEVSSHAL--VQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF--- 203

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E     V  +
Sbjct: 204 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAIVTNK 254

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 255 NQTFHIDSPLLGLFNLYNLLVASVCVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 311

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 312 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHF 360

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 361 AKIAI---ITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDLVV 417

Query: 449 VKS 451
           +  
Sbjct: 418 ILG 420


>gi|154149379|ref|YP_001406492.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381]
 gi|153805388|gb|ABS52395.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381]
          Length = 479

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 123/346 (35%), Gaps = 33/346 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
                II IT S GKT+ K  L   L    K      S N   G+   +   +  D    
Sbjct: 158 MPDLLIIQITASFGKTSIKNFLFELLKDDFKVQKTPRSVNTLNGIIRDINENLSYDTKIY 217

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I+ +T  + P I ++  I   H+  F  IE I + K E      +    
Sbjct: 218 IAEAGARKNGDIKEITQFLNPQIVLVGEIGAQHIEYFKSIENIRATKLESLSS-NRLKHA 276

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           FL         L  ++      TIY        D Q+  +    +   +E++   K    
Sbjct: 277 FL-----HSTTLLKENET---NTIY--------DKQIANFTANLDGIKLEMKSGEKIFAE 320

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G   AQN+   + I   L  + +   K     H  E R ++           +ID
Sbjct: 321 IL---GDFNAQNLAACILIAKFLGINAEKIAKNAKNLHSVEHRLQKIMT----NEKFIID 373

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S+N N   M A+  ++     + + R++ +   + E    ++  +  L   ++      
Sbjct: 374 DSFNGNLKGMCASYDLVK----NYKSRKVIITPGIVEG---TKEMNEILGIKINEI-FDL 425

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V ++G     +  A      + + +    +   + +     D+++ 
Sbjct: 426 VMITGDLNAEILGAKIDPKKLIFIKDKSKMIEILGAETKADDLILF 471


>gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
 gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
          Length = 505

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++ +A + GA   V         G  ++ V  V
Sbjct: 23  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPEGKGMHALIVSNV 79

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN-- 145
              +  L+        +    +IA TG+ GKTT+   L   L  +     A   S ++  
Sbjct: 80  TKAMSLLSAAF-YRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVV 138

Query: 146 ----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +  P +L      R  VD       + +S     +     +   +    
Sbjct: 139 GPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFL 198

Query: 191 TIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247
            I P H+        E+    K ++     K     +N   D F E+  A +      +I
Sbjct: 199 NITPDHIGVNEHPNFEDYLHCKLQLMVNSRK---CIINAMTDHFDEIYAAATTTTNPDSI 255

Query: 248 YSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHM 292
           Y F ++        +  DF+    +    ++  ++  +  +   +          IG   
Sbjct: 256 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 315

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +                 G+            ++D  Y  N AS
Sbjct: 316 EINATAAIIGAGLAGVNYQD---CYDGIKNVTIPGRMETLTTANHGTVIVD--YAHNKAS 370

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SG 408
           M A +S +         + I V+G     G+   S     +E LSLY  + V+L     G
Sbjct: 371 MIALMSFMQ--KEFDSPKIIVVVGAP---GDKGISRRAGFSESLSLY-ANQVFLTTDDPG 424

Query: 409 -FHVLALKDALPRSIHVHYSETM------DGLFLFIQSSLVDGDVVVV--KSS 452
                 + D +   I     + M        +   I+ +  D DVV++  K +
Sbjct: 425 FEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGA-KDDDVVLICGKGA 476


>gi|293374534|ref|ZP_06620856.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sanguinis
           PC909]
 gi|292646913|gb|EFF64901.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sanguinis
           PC909]
          Length = 437

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 135/389 (34%), Gaps = 43/389 (11%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +     + V          +        L S  T IAI G+ GKTTT  +L   L    
Sbjct: 69  NAFKDDHVEVIQAKQAGAKCVRYHDFLGDLASNFTSIAIAGTHGKTTTTGLLAHVLRLNY 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T   IG             +   +  F +FE        + +     RP  A+IT I  
Sbjct: 129 PTSYLIGDG---------TGKGVENSRFFVFEACEYQRHFLAY-----RPDYAIITNIEH 174

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F+ I+++  A   +F    K   +    DD   + L+  ++      + ++G   
Sbjct: 175 DHPDYFTDIDDVLDAF-NVFSNQTKK-MVIACGDDPEVKKLQTSTN------MMTYGLES 226

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + +   +   + +E +  +V + G+          G HM  N L  + +  +   +    
Sbjct: 227 HNNVVAKNILKTAEGTAFDVFINGEFYHTFNTLFFGDHMVLNSLAVITVCYLEGLEASII 286

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L +F   +      R A  +    +I + Y  +P  + A +  + Q     +   +A
Sbjct: 287 DKDLRLFEGVK-----RRFAQKKHHTQIIIDDYAHHPTEIAATLKAVRQ--KFPDRNLVA 339

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----HVHYSE 428
           V          + +F  + A+ L+L    H++L+     A + +   SI       H++ 
Sbjct: 340 VF--QPHTFTRTAAFIDEFAQSLNL--ADHIYLTDIFGSARESSGSVSIQTLIDKCHHAN 395

Query: 429 TMD-GLFLFIQSSLVDGDVVVVKSSNSCG 456
            ++      +Q       VVV   +    
Sbjct: 396 LIEKETVEQLQQH--QDSVVVFMGAGDIK 422


>gi|237720379|ref|ZP_04550860.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_2_4]
 gi|229450130|gb|EEO55921.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_2_4]
          Length = 466

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 145/410 (35%), Gaps = 44/410 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +V+ T  V         V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKESTLVIYTPAVPQEHEEI--VYFRNNGFEIQKRAQVLGTITHSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    L     +  A +G  + + G  L L++        + E       
Sbjct: 119 GTHGKTTTSTMTAHLLHQSHVECTAFLGGISKNYGTNLLLSQTSPYT---VIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P++ VIT+  P HL  +   +    +       ++  G + +       +
Sbjct: 171 EFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HM 292
            +  +        +Y++ + +  DF     +  + + +++       +  +  GI     
Sbjct: 225 GISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGIPVSIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ 
Sbjct: 284 IENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKIKNDRIVFLSD-YAHHPSE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISH 403
           +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y    
Sbjct: 340 IKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
             + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 396 APIPGVTSKLIYDNLRPGIEKSMCK-KEDILNILKDKNIEVLITLGAGDI 444


>gi|218710689|ref|YP_002418310.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
 gi|218323708|emb|CAV20053.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
          Length = 452

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 139/391 (35%), Gaps = 24/391 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     +++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDNNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YAPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G IF   +D+  + + ++        
Sbjct: 181 LVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFSPKEDTAIQDVLSRGCWSE--- 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             +    +  D+  +  K   + S   V  QG+ +  V    +G H   N LM +     
Sbjct: 238 --TESSGEQGDWDAK--KLVKDGSQFGVYFQGECVGTVDWDLVGDHNVNNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A ++L+ F   +   +R          ++ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVTPDLACESLAKFINTK---RRLEFKGEVAGVSVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIH 423
               + IAVL        + +  H + LA+ L   + ++++       +++D A      
Sbjct: 348 VDTKKIIAVLE--PRSATMKRGVHKETLADSLMQADSTYLFQPDNIDWSVQDVADACHQP 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            H S+ MD     I S    GD ++V  SN 
Sbjct: 406 AHVSDDMDAFVAKIVSEAQAGDQILVM-SNG 435


>gi|238022772|ref|ZP_04603198.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
 gi|237865975|gb|EEP67111.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
          Length = 452

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 134/375 (35%), Gaps = 35/375 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
            +  ++A+ G+ GKTTT  ML   L          IG    +  V   L +   +  F +
Sbjct: 103 HQHWVLAVAGTHGKTTTASMLAWVLEYAGMGAGFLIGGVPQNFNVSARLPQ--NESPFFV 160

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +   G 
Sbjct: 161 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPNLAAIETQFHHLVRTIPGEGL 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I  N        LK          +  FG   NA +Q+   +        +VQ QG+++ 
Sbjct: 221 IVANA---RSGSLKTVLDQGCWTPVAPFG--DNAHWQIANVQPDGA---FDVQYQGETVG 272

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G H   N L  +     +   V+ + +ALS F   +   +R          T+
Sbjct: 273 HIAWDLLGNHNRLNALAVIAAAQHVGVRVEHSCQALSQFKNVK---RRMEIKGIANGITV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P +++  ++ L Q    G  R IAVL      M  +G +S +         S
Sbjct: 330 YDD-FAHHPTAIETTLAGLRQ--KVGSARIIAVLEPRSNTMK-LGTMSAAL------AGS 379

Query: 398 LYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L +   V+    G          P     H  +  D     I ++   GD +++  SN  
Sbjct: 380 LKDADQVFCYAGGVDWDVASALAPLGSKAHIGKQFDDFVNRIAAAAQAGDHILIM-SNG- 437

Query: 456 GFYRLINLLLEEFPA 470
           GF  +   LL +  A
Sbjct: 438 GFGGIHEKLLAQLAA 452


>gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T17]
 gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
 gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
          Length = 482

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 49  GHDASSLDLLPGGATAVVTTHAAIPKTNPELVEARRRGIPVVLRPAVLAKLMA------- 101

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 102 --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 151

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 152 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALV 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 212 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 270

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 271 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
                + + Y  +P  + A ++    +   G+G R  V+     +   +++F  +     
Sbjct: 331 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEFGRAL 389

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L+G    ++ + +  ++ + Y      +   + ++   GDV+
Sbjct: 390 NAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASPGDVI 447

Query: 448 VVKSSNSC 455
           V   +   
Sbjct: 448 VTMGAGDV 455


>gi|37678619|ref|NP_933228.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
 gi|37197359|dbj|BAC93199.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
          Length = 484

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 141/409 (34%), Gaps = 33/409 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 95  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 154

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 155 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 210

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     + ++       
Sbjct: 211 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQDGALTDVLSRG------ 264

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +    D + +  K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 265 -CWSDQEFSGQDGEWQAVKLSKDGSHFEVWLQGEQVGTVQWDLVGDHNVDNALMAIAAAR 323

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R           + D+ +  +P +++  ++ L   +
Sbjct: 324 HVGVTPDLACEALGRFINTK---RRLELKGEINGVAVYDD-FAHHPTAIELTLAGLR--N 377

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSI 422
             G+ + IAVL        + +  H +     SL     V+L     +A  ++D   +  
Sbjct: 378 KVGDKKIIAVLE--PRSATMKRGVHKETL-AASLKQADEVFLYQPESIAWSVQDVAAQCQ 434

Query: 423 HVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLE 466
              + S+ +D     I      G  ++V  SN  GF     +L+  L  
Sbjct: 435 QPAFTSDNIDQFVANIAQRAEAGTQILVM-SNG-GFEGIHGKLLTALEN 481


>gi|170768370|ref|ZP_02902823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
 gi|170122474|gb|EDS91405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I++  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRTAKLRIYDNAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPD--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|293393178|ref|ZP_06637493.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
 gi|291424324|gb|EFE97538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
          Length = 459

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 136/380 (35%), Gaps = 44/380 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEACGYQPGFVIGGVPGNFEVSARLGGSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D   + + A       + +      +   ++    K  ++ S  EVQL G+++ EV  
Sbjct: 221 DNDPHLKQVMAMGCWSEQELV-----GEEGVWRAN--KLTADASRYEVQLNGETVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL+ F       +R          T+ D+ 
Sbjct: 274 TLVGEHNMHNGLMAIAAARHVGVLPADACRALNDFINAR---RRLELRGEANGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  MG         L         
Sbjct: 330 FAHHPTAILATLAALRG-KVGGTARILAVLEPRSNTMK-MGINKNELAPSLGR------A 381

Query: 402 SHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L   H     V  + +A  +    H+S  +D L   +  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPHHIPWQVAEVAEACVQ--PAHWSADVDTLVEMVVKTAQPGDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEEFPAIQ 472
           F     +L+  L  +  A Q
Sbjct: 438 FGGIHDKLLTALANKPAAPQ 457


>gi|269122825|ref|YP_003305402.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314151|gb|ACZ00525.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 457

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 126/356 (35%), Gaps = 37/356 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
               +     IIA TG+ GKTTT       L          G+          + +   +
Sbjct: 82  AYEYMNKDIQIIAFTGTNGKTTTCTKTYEMLKKAGFNVELGGNVGRSF---AEIVKENKE 138

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +D+ + EL    L         ++P+I+ I  + P HL  +  +E+    K  IF   +K
Sbjct: 139 LDYIVLELSSYQLEN----NPKIKPYISGIINLTPDHLGRYKDVEDYYMTKFNIFSNQDK 194

Query: 220 TGTIFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADF----QLRKWKQCSE--Q 269
              + +N DD+ F  L  K+  L      K +Y    +K + F    Q+   K  SE   
Sbjct: 195 KDRMIVNVDDATFLNLYNKAKELENYRNPKRVYISTNNKGSIFVKNGQIYVMKDLSEMYN 254

Query: 270 SWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           S   +      +  V      G H  +NML  +    I            +     +   
Sbjct: 255 SKFSLSQSADKLIDVKDIALKGEHNLENMLFLIATAKICGVPNKVI---RNFLKEVKSIE 311

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R      +     I++S   N AS K AI          E   I + G     GE  + 
Sbjct: 312 HRMEDFFKKSNTVFINDSKGTNVASTKKAI-------ASYENDVILICG-----GEDKKV 359

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSL 441
              +L + +    I   ++ G +   +++ L +  +  Y   ET+D   + I+ ++
Sbjct: 360 PLYELGKEIGK-KIKFTYIYGENRYLIENELKKVGYSKYSIFETVDECIMDIKDNV 414


>gi|196045927|ref|ZP_03113156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
 gi|196023367|gb|EDX62045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
          Length = 450

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 123/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSVINADDVDVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T++   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTASKLVRAAEKAGLETIESVDTLEEAVVKAYAHSTDGDVILL 422


>gi|324112499|gb|EGC06476.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia
           fergusonii B253]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALILLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H      L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLAH-----YLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|311087110|gb|ADP67190.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087656|gb|ADP67735.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 156/425 (36%), Gaps = 60/425 (14%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+      +  +  N   + +    +IP+    +++  L               IA++
Sbjct: 48  DFIIK-----SSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKG---------IAVS 93

Query: 115 GSVGKTTTKEMLTIAL--SSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           G+ GKTTT  M+      S +  T      I S N++  +  +         + I E   
Sbjct: 94  GTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSS--------SYFITEADE 145

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      + P+I ++T I   H+ ++    +++        + +   GT  +  D
Sbjct: 146 SDASFL-----YLNPNIIIVTNIESDHIDHYDNSFKKLKQTFLIFLKKITLYGTAIVCID 200

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
           ++    +           I ++G +KNAD ++  +KQ +      + L+  K + ++ + 
Sbjct: 201 NNAICDILTNLKC----KIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNI 256

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTL 341
            G H A N    + +      + D  I +L  F     R +        +    +    L
Sbjct: 257 PGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQGFDKRANCML 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--- 398
           ID+ Y  +P  +   I  +    P+     I +          + + + D  + LS    
Sbjct: 317 IDD-YGHHPTELSETIKTIRISWPNKN--LIMIF--QPHRYTRTYNLYHDFVQTLSQVDV 371

Query: 399 ------YNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 Y+ +  ++ G   L+L + + +    +V      + +   +  +L   D+++++
Sbjct: 372 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 431

Query: 451 SSNSC 455
            + + 
Sbjct: 432 GAGNI 436


>gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA I+AITGS  K+T   ++    ++  +T A  G+          L 
Sbjct: 95  LSGDIELFAREAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNLGTP-----ALD 149

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +VD  + EL    L      T  +   +A    I+  H+  +SG+     AK  IF
Sbjct: 150 LLADEVDLYVLELSSFQL----ETTEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIF 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N DD     L  +         ++FG  K  DF+     +   + ++  
Sbjct: 206 RGARQ---VVVNRDDRLSRPLVGE-----DVPTWTFGLGK-PDFKGFGLFEEKGEKYLAF 256

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +       +  L  F    G   R +   
Sbjct: 257 QFEALMPVRELKMRGAHNQSNALAALALGHAVGLPFGPMLDTLRRFT---GLPHRCQWVG 313

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +   +  D+S   N   + AA++ +  +    +G+ + + G   +  + S +    +A 
Sbjct: 314 ERAGVSYYDDSKATN---VGAALAAIEGLGADIDGKLVLIAGGDGKGADFS-ALRAPVAR 369

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L +AL  +  +    +++            GD V++
Sbjct: 370 YCRA-----VVLLGRDAPRLAEALGEATVLIRVASLEEAVQRAAECAESGDAVLL 419


>gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
 gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus GG]
 gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
          Length = 517

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 163/489 (33%), Gaps = 77/489 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQTTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P    R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFG-----------------KSKNADFQLRKWKQCS-EQSWMEVQ 275
           +  A +     ++IY F                   S+ AD    ++      +    + 
Sbjct: 253 VYAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALN 312

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + G         IG     N    +    +   D   A+  ++      GR + ++   +
Sbjct: 313 IGG---HYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHFQVPGH 368

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +   Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 369 G----TVYVDYAHNYASMKALLSFLK--RSYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALP-----RSIHVHYS-ETMDGLFLFIQSSLVDGD 445
           L+         +          + + +        + VH   +  + +   I++S    D
Sbjct: 420 LTELATEAFLTTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKAS-GPKD 478

Query: 446 VVVV--KSS 452
           VVVV  K +
Sbjct: 479 VVVVAGKGA 487


>gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis ATCC 12228]
 gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis ATCC 12228]
 gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU028]
          Length = 449

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASKVAQEVKSDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 166 ELSSFQLLGIEE----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 222 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 373 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 875

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 161/478 (33%), Gaps = 78/478 (16%)

Query: 29  GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           G +ID ++ I P     A++     G D         AG+ +   ++   +   +  +  
Sbjct: 389 GTAIDRTKEIHPDNIEIAVRAAKAIGLD--------IAGIDITMENISMPLNRSNGAIIE 440

Query: 88  V-----------------DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           V                  DV  A+  +      ++   II++TG+ GKTTT  M++  L
Sbjct: 441 VNAAPGIRMHHYPSKGKSRDVAKAIVNMLYPKGSKATIPIISVTGTNGKTTTVRMISQIL 500

Query: 131 SSIKKTYACIGSYNNHIG----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                T     +   ++            P +      D +     L  +  G +R    
Sbjct: 501 KMYGYTVGMTSTDGIYVDDVCIYKGDNSGPKSARTCLADKNIDAAVLETARGGIVREGLG 560

Query: 181 LVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                + +IT I+  HL       +E++A  K+ + E ++K G   LN DD     +  +
Sbjct: 561 YDLADVGIITNISEDHLGIDGIETLEDLAFVKSLVVEAVKKDGYSVLNADDPMTPYISKR 620

Query: 239 SHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +       I  F   +N                ++          +    +   +    +
Sbjct: 621 AKG----KIIYFSMHENNITIKRHLEEGGISVYVKNDTIVIANGEIVPVAKIDEIPATLN 676

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G   +  +N +  +     +   V+   K +  F+  E          N G F ++ + Y
Sbjct: 677 GKVLYNVENAMAAIAASYGIKIPVNVISKGIKSFYCDENHNPGRFNIFNVGSFRVLVD-Y 735

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S++  I    +++P+       +LG +   G+ S S  + + E+        V++
Sbjct: 736 GHNIDSIRKVIESARKLNPNR------LLGVIGVPGDRSDSSTLKIGEICGE-GFDKVYI 788

Query: 407 ----------SGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      G       +  LK  L +       + +D L   +  +   GD++V+
Sbjct: 789 KEDLDLRGRKPGEIAKLLEIGVLKGGLSKEDVNVILKEVDALKTAMYEA-QPGDLIVI 845


>gi|218678972|ref|ZP_03526869.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli CIAT 894]
          Length = 117

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%)

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE +Q  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 7   RGRRIAVLGDMLEMGEYAQKVHSDLAVPLLAAGIEHVWLAGAEMAALKESLPESVHVEYR 66

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           E    L  ++  S+V GDV +VKSS   GF +++  LL++FP 
Sbjct: 67  ENTSELTDYVLDSVVPGDVFMVKSSLGIGFGKIVAALLDKFPP 109


>gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
 gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
          Length = 440

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 125/374 (33%), Gaps = 43/374 (11%)

Query: 80  SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++P+    V+  +    ++ +A R  +     AITG+ GKTT   ML   L    +  
Sbjct: 73  KYTVPIVRYFVEHEIAIYTEIEIAYRYANGFRYGAITGTNGKTTITTMLYEMLKKKGQ-- 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             I + N    +     R   +V     EL    L  I        P ++V+  +AP HL
Sbjct: 131 -AIVAGNIGYPLSELALRYEDEVKDVALELSNFQLLGIEQFA----PTVSVVCNLAPDHL 185

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E   ++K  I+E  ++      N DD    ++   +  +  K I         D
Sbjct: 186 DYMPSVESYYASKMRIYENCKEDAWFLRNLDDP---IVMEYAKNIPCKVI---------D 233

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           F L +      ++  +V  +   +  E      G +   N ++   +   L    +    
Sbjct: 234 FSLTRKNCPLHRANGKVYFEDVVLFEEKSLALKGDYNLSNAMIAACMAYRLGVSCEDIQT 293

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F P E    R      +      ++S   N  +++AA+        H   + I +L
Sbjct: 294 VIAQFQPVE---HRMEYIGEKRGVKFYNDSKATNTHAVEAAL--------HCFDKNIILL 342

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
               + G   Q              I      G       +      HV   ETM     
Sbjct: 343 AGGHDKGISFQEL------SAYDKRIKLCIAFGETKDQFVNVFS---HVETRETMQAALT 393

Query: 436 FIQSSLVDGDVVVV 449
                  +GDV+++
Sbjct: 394 TAIEKASEGDVILL 407


>gi|148927746|ref|ZP_01811182.1| cytoplasmic peptidoglycan synthetases domain protein [candidate
           division TM7 genomosp. GTL1]
 gi|147886909|gb|EDK72443.1| cytoplasmic peptidoglycan synthetases domain protein [candidate
           division TM7 genomosp. GTL1]
          Length = 302

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 22/291 (7%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKS 239
           +   IAV+T +   H+  F  ++ +A  +  +  F  L       +N DD   E +K   
Sbjct: 1   IHADIAVVTGVTNEHMEFFKTLDAVAQEELAVSQFSSLT-----VVNRDDVLGEFVK--- 52

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNML 297
             +   +I ++G S +A+++        E+ +    + L+   M V  H +G H  +  +
Sbjct: 53  -YVNTSSIDTYGLSGSAEYRFVVEDSSLEEGFRGKFISLEFGEMPVTLHVVGEHNTKAAV 111

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + + +          L    P +G   R           L+D+SYN++  +  AA+
Sbjct: 112 AAGLVAAKMGLSAKEIAAGLEKIRPVKG---RMNLLKGLEDSILLDDSYNSSAVTAVAAL 168

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-- 415
             L +I       RIA+LG + EMGELSQS H  +        ++ V   G         
Sbjct: 169 QTLYKIQAPQ---RIAILGSINEMGELSQSEHEKVGNACDPNALAWVVTVGKMAEKYLAP 225

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGFYRLINLLL 465
            A  R   V   +       F++  +     ++ K S N       + LLL
Sbjct: 226 AAKERGCQVRSFKEAYDAGAFVRKVMEPRAAILAKGSQNGVFTEEALKLLL 276


>gi|307266535|ref|ZP_07548068.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918454|gb|EFN48695.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 126/365 (34%), Gaps = 45/365 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  LGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E+    L  I+      +P I+ I  I P HL+     E     K  IF
Sbjct: 155 T---EGDFIVAEISSFQLETIKEF----KPKISCIINITPDHLNRHKTFESYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WME 273
           E         LN+DD     LK K+       ++ F +  +    L       + S ++ 
Sbjct: 208 ENQRGDEYTVLNFDDPVTWSLKNKAKC----RVFPFSRKSS----LENGAYVKDGSIYIS 259

Query: 274 VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           V    K +  +   +  G H  +N L    +  +     +     L  F   E    R  
Sbjct: 260 VNGNAKKIIDIEEIYIPGEHNLENALAASSVAYLSGISANVIANTLKTFKGVE---HRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSF 388
                      ++S   NP +   AI  L           + + G      E  E  ++F
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKT-------PIVLIAGGYDKGSEFDEFVKAF 369

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDG 444
           +  +           + L G     ++D   +       + ++ T++        S  +G
Sbjct: 370 NGKV---------KKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEG 420

Query: 445 DVVVV 449
           D V++
Sbjct: 421 DSVLL 425


>gi|239813924|ref|YP_002942834.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
 gi|239800501|gb|ACS17568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
          Length = 707

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 142/445 (31%), Gaps = 65/445 (14%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVL 92
           SR   P + +        +  +F+    +  A               L  +P+       
Sbjct: 250 SRLPTPGQPYV--PTAAREAAEFVAKIAELSATNPASAAVEEEDTPQLKLVPIEEPPAPR 307

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           G                ++A+TG+ GKTT   +    +    K+ A  G+    +   L 
Sbjct: 308 G------------YTPAVLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTL- 354

Query: 153 LARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            A +  +   D  + EL    L  ++       P  A +  +   HL     ++  ASAK
Sbjct: 355 AAHIDAETLPDVWVLELSSFQLDGVQ----GFEPTAATVLNLTQDHLDWHGDMQAYASAK 410

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADFQLRK 262
           A IF      G + LN DD     +     K K     ++   +FG S   +  D+ + +
Sbjct: 411 ARIF---GTQGLMVLNRDDPGVMAMLPAPVKVKLQRPQVRAHVTFGASMPLRPGDYGIER 467

Query: 263 W-----------------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                             ++       E+ LQ      V    G H A N L  L + S 
Sbjct: 468 VNGMAWLVRALEADETQKRKRGAVVEEEIFLQRLLPADVLRIRGRHNAMNALAALALASA 527

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +   +          G   R             D+S   N  +  AA++ L +   
Sbjct: 528 AGCPLGPMLYG---LREYRGEPHRVEPIAIVDEVEYFDDSKGTNVGATVAALNGLGE--- 581

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHV 424
             + R + +LG   +  +        LA  ++ Y    V L G     ++ AL      +
Sbjct: 582 --DRRVVVILGGEGKGQDFEP-----LAAPVAQY-ARAVVLIGRDAPLIEQALAATGASL 633

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ +M        +    GD V++
Sbjct: 634 MHAGSMQEAVKLAAARANPGDAVLL 658


>gi|26246021|ref|NP_752060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli CFT073]
 gi|218687965|ref|YP_002396177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ED1a]
 gi|227885007|ref|ZP_04002812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300981125|ref|ZP_07175371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|301048480|ref|ZP_07195505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|30316043|sp|Q8FL65|MURD_ECOL6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|26106418|gb|AAN78604.1|AE016755_104 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           CFT073]
 gi|218425529|emb|CAR06312.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           ED1a]
 gi|227837836|gb|EEJ48302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300299666|gb|EFJ56051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|300409027|gb|EFJ92565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|307551932|gb|ADN44707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ABU 83972]
 gi|315294717|gb|EFU54060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 153-1]
 gi|324008323|gb|EGB77542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 57-2]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     + + +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLATRVQPGDMVLL 410


>gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
 gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
          Length = 523

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 148/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
             I+P H+         +    K ++   L  +    +N + + F+ +  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQL---LVNSRKCIINAETAHFDEVYAAATTTTNPDS 265

Query: 247 IYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +         +  DF+    +   +++   +              +     +G  
Sbjct: 266 IYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K           G+       +    ++D  Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKG---IRDVTIPGRMQTERTKKHGMVVVD--YAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A +  +   +   + + I V+G     G+   S     +E L+ Y     +L     
Sbjct: 381 SMMALMRFMR--NEFNDPKIIVVVGAP---GDKGVSRRPGFSESLTAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
           G     ++ + +   I     +               +     DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVVLICGKGA 487


>gi|298480579|ref|ZP_06998776.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. D22]
 gi|298273400|gb|EFI14964.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. D22]
          Length = 466

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 146/410 (35%), Gaps = 44/410 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +V+ T  V         V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKESTLVIYTPAVPQEHEEI--VYFRNNGFEIQKRAQVLGTITHSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    L     +  A +G  + + G  L L++        + E       
Sbjct: 119 GTHGKTTTSTMTAHLLHQSHVECTAFLGGISKNYGTNLLLSQTSPYT---VIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P++ VIT+  P HL  +   +    +       ++  G + +       +
Sbjct: 171 EFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HM 292
            +  +        +Y++ + +  DF     +  + + +++       +  +  GI     
Sbjct: 225 GISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGIPVSIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +  A  +   + ++ F   +   +R+   +       + + Y  +P+ 
Sbjct: 284 IENGVAAMALAHLNGATDEEIKRGMASFRGVD---RRFDFKIKNDRIVFLSD-YAHHPSE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISH 403
           +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y    
Sbjct: 340 IKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
             + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 396 APIPGVTSKLIYDNLRPGIEKSMCK-KEDILNILKDKNIEVLITLGAGDI 444


>gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis RP62A]
 gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis RP62A]
          Length = 449

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASNVAQEVKSDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 222 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 373 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|86152303|ref|ZP_01070514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85840792|gb|EAQ58043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 427

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 118/382 (30%), Gaps = 57/382 (14%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPL 151
           N+     ++  K  II ITG+ GKTTT   +   L  +       G+     N+      
Sbjct: 47  NECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEK 106

Query: 152 TLARMP-------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           +L   P                DF I E+    L  ++     +     + T I   HL 
Sbjct: 107 SLTTSPILKTLEYLQIATQKKCDFFIMEVSSHAL--VQNRIEGLNFVAKIFTNITQDHLD 164

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E    AK   F         F+N D        A +    ++  +++G    A +
Sbjct: 165 FHGTFENYKEAKELFF---TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALY 213

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKAL 317
           Q++ +    E     V  + ++  +    +G     N+L+    V+ L   D+    KA+
Sbjct: 214 QIKVYSL-EEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELIKPDLKDLEKAI 272

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S F      G+  + A        +   +   P  ++  +  L         + I V G 
Sbjct: 273 SGFGGV--CGRVEQVAKG------VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGA 318

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSET 429
             +  +  +     + E  +   I     S           +  +     +   V   E 
Sbjct: 319 GGDRDKTKRPLMGKIVEHFAKIAI---ITSDNPRSEEPKTIMEEILSGFAKKEKVLMIED 375

Query: 430 MDGLFLFIQSSLVDGDVVVVKS 451
                        + D+VV+  
Sbjct: 376 RKEAIKKALELKENDDLVVILG 397


>gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 139/349 (39%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     S   +    G+          L  +  + D  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKSAGWSVGVGGNIGLP-----ALMLLKQECDLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A I  +   H+  +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTTSLRAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG    AD     +    +Q  + ++++G+ + 
Sbjct: 209 CVVNSDDALTMPIRG-----ADSRCVSFG----ADVG--DYHLNRQQGEIWLRVRGEKIL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++ +L+     
Sbjct: 258 NTREMKITGKHNFTNALAALALADAVGIPRASSLKALTTFT---GLAHRFQLSLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA+ L   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLAQYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     I + +  GD+V++
Sbjct: 365 V-RLYCFGRDGEQLAALRPE--VAEQTETMEQAMRIIATRVKSGDMVLL 410


>gi|260770966|ref|ZP_05879895.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
 gi|260614203|gb|EEX39393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
          Length = 456

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 139/394 (35%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVVGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDHLLYDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D+    +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPRQDAALADVLRR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K   C + S   V  QG+ +  V    +G H   N LMT+     
Sbjct: 239 EFS---GEQGEWQAEKI--CKDGSQFHVLHQGERVGTVTWDLVGEHNVNNALMTIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVTPDLACEALGSFINTK---RRLELKGTENGVTVYDD-FAHHPTAIELTLEGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
            G+ + IAVL      M  +G   ++    LA   S+Y    ++       A++D A   
Sbjct: 348 VGDRKIIAVLEPRSATMK-LGVHKETLAASLAAADSVY----LFQPSNIPWAVQDVADQC 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           S   H S+ M      I      GD ++V  SN 
Sbjct: 403 SQPAHVSDNMAEFVAQICQEAQPGDQILVM-SNG 435


>gi|152996629|ref|YP_001341464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MWYL1]
 gi|150837553|gb|ABR71529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MWYL1]
          Length = 449

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 136/370 (36%), Gaps = 40/370 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  +AITGS  K+T   ++ + L +  K     G+          L  +  + DF + E
Sbjct: 108 DAPFVAITGSNAKSTVTTLVAMLLQASGKNAKAGGNLGLP-----ALDLLAPNTDFYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++  +A +  ++  H+  +  + E   AK +++ G +       N
Sbjct: 163 LSSFQL----ETTHALQADLACLLNVSEDHMDRYKDLYEYQRAKQKVYRGCKA---AVCN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     L A+   +   T      +K+ D +        + +W+   ++         
Sbjct: 216 KQDILTAPLLAEGVPVRAFT------TKSPDLKEYGLLNDDDGAWLCKGVERLYHTSQIA 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L  L ++ +L  DV +      V     G   R          T I++S 
Sbjct: 270 LKGSHNHANVLAALAMLELLGVDVLSEAVG-KVLKEFGGLPHRCETVRVLNGVTYINDSK 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA+  L   +       + + G   +  + S      LA+ ++   +  V+L
Sbjct: 329 GTNVGATLAALQGLGSTA---NKNILLIAGGEGKGADFSA-----LAKPVNNL-VRTVYL 379

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     + + LP +  V + +T+D +   I     +G++V+     +S           
Sbjct: 380 FGKDADRIAEVLPSNTDVKHFDTLDQIVASIGQDSKEGEIVLFSPACASLDMYKNYEMRG 439

Query: 455 CGFYRLINLL 464
             F RL+  L
Sbjct: 440 AHFARLVAEL 449


>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 464

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 132/372 (35%), Gaps = 42/372 (11%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +IPV G  D+        V   L      I +TG+ GKTT  E +       K  Y   G
Sbjct: 97  NIPVVGELDL--------VFGLLPDGVNTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAG 148

Query: 142 SYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           +          L+ +  D+  G   + EL    +      +  ++P IA+IT +   H+ 
Sbjct: 149 NVGTP------LSEIIYDIVTGSNLVLELSSYQIEN----SIFLKPKIAMITNLTLDHID 198

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNAD 257
            ++ ++E  +AK  +F+  E  G    N DD + E  +K  +    I  +     SK  D
Sbjct: 199 RYANLDEYFNAKVHLFKNQE-NGYSIYNKDDPYLEKNIKNLTLKTKILNV-----SKRKD 252

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F +    +        +              G H  +N L     + + + +     KAL
Sbjct: 253 FSIAGVIENKIFVKDNLDFVKIIDLSDLSLKGEHNIENALFVASSLYLSSVEPKHIEKAL 312

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S F   E R +R+         T I++S + NP S   A+    +         I +LG 
Sbjct: 313 STFSGVEHRQERF---YTHKGITWINDSKSTNPESTIVALKTWGE-----NNNLILILG- 363

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
               G+   +   +L  + S      + L G       D      ++    ++D +    
Sbjct: 364 ----GKDKNTPLDELVSLASKT-CKAIILFGEAKKRFFDHFKSFPNLFVLNSLDDVIDKA 418

Query: 438 QSSLVDGDVVVV 449
                  D+V+ 
Sbjct: 419 FELAKPNDIVLF 430


>gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 158/488 (32%), Gaps = 75/488 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P    R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSM- 281
           +  A +     ++IY F    +A F+ ++            +    +S   +    +   
Sbjct: 253 VYAAATTTTYPESIYLF---ASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAA 309

Query: 282 ------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       IG     N    +    +   D   A+  ++     +  G+     + 
Sbjct: 310 ALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAK---VKIPGRMEHTKVA 366

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +D  Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 367 GHGAVYVD--YAHNYASMKALLSFLKH--AYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDV 446
           L+ +       +          + + +   I      VH             S     D+
Sbjct: 420 LTEFATEAFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDI 479

Query: 447 VVV--KSS 452
           VVV  K +
Sbjct: 480 VVVAGKGA 487


>gi|299142302|ref|ZP_07035435.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
 gi|298576391|gb|EFI48264.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
          Length = 459

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 130/368 (35%), Gaps = 37/368 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      +   G+ GKTTT  M    +        A +G  + + G    L+ 
Sbjct: 101 RAQVLGTLTRSHKGLCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E       E     H +RP ++VIT+  P HL  +   E    +     E
Sbjct: 160 --DSSDYVVIEA-----DEFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTE 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + ++ D      L+ K H      +Y + + +  DF        + +   +  
Sbjct: 213 LIQPGGALIIHRD------LEMKQHVQEGVKVYDYSR-EAGDFHAENIVIDNGEISFDFV 265

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              ++++ +  G       +N +  + +  +     +     +  +    G  +R+   +
Sbjct: 266 SPIENVKNIKLGQPVPINIENAVAAMAMAQLNGCTAEELRYGMRTY---AGVDRRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P   K  +     +    +GR+I V+     +   ++ F+ + A+
Sbjct: 323 KNDKHVFLSD-YGHHP---KEVLQSARSLKELFKGRKITVIFQ-PHLYTRTRDFYHEFAD 377

Query: 395 VLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS         +Y      + G     + D L   +        D +  +++S   D D
Sbjct: 378 ALSNFDEVVLTEIYPAREEPIEGVTSKLIFDNLKPGVEKTIIR-KDDVLDYVKS--RDFD 434

Query: 446 VVVVKSSN 453
           V+VV  + 
Sbjct: 435 VLVVLGAG 442


>gi|27364161|ref|NP_759689.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus CMCP6]
 gi|27360279|gb|AAO09216.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus CMCP6]
          Length = 484

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 140/407 (34%), Gaps = 33/407 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 95  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 154

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 155 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 210

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     + ++       
Sbjct: 211 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQDGALADVLSRG------ 264

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +    D + +  K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 265 -CWSDQEFSGQDGEWQAVKLSKDGSHFEVWLQGEQVGTVQWDLVGDHNVDNALMAIAAAR 323

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F       +R           + D+ +  +P +++  ++ L   +
Sbjct: 324 HVGVTPDLACEALGRFINTR---RRLELKGEINGVAVYDD-FAHHPTAIELTLAGLR--N 377

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSI 422
             G+ + IAVL        + +  H +     SL     V+L     +A  ++D   +  
Sbjct: 378 KVGDKKIIAVLE--PRSATMKRGVHKETL-AASLKQADEVFLYQPESIAWSVQDVAAQCQ 434

Query: 423 HVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLL 464
              + S+ +D     I      G  ++V  SN  GF     +L+  L
Sbjct: 435 QPAFTSDNIDQFVASIAQRAEAGTQILVM-SNG-GFEGIHGKLLTAL 479


>gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
 gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
          Length = 425

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 130/410 (31%), Gaps = 55/410 (13%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G  ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +
Sbjct: 4   AGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGR 63

Query: 136 TYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLT 179
               IG+    +                +   LA M    VD  + E+    L   R   
Sbjct: 64  VAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--V 121

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA 237
              R  +   T ++  HL     + +   AKA +F  +   +  T  +  DD        
Sbjct: 122 DGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAG----R 177

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQN 295
              A     I      + A ++             +  +   G    +     G +   N
Sbjct: 178 AMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVAN 237

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+ L I+  +    + A+            G+  +    QGF  L+D  Y   P ++++
Sbjct: 238 CLVALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD--YAHKPEALRS 292

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
            ++ L+        RR+AV+      G+        +  + +      V ++  +     
Sbjct: 293 VLTTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDED 344

Query: 414 --------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                   L  A          E  D         +    GDVV++  K 
Sbjct: 345 PTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 394


>gi|237716649|ref|ZP_04547130.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D1]
 gi|262405424|ref|ZP_06081974.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_22]
 gi|294646205|ref|ZP_06723859.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CC
           2a]
 gi|294809128|ref|ZP_06767846.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442632|gb|EEO48423.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D1]
 gi|262356299|gb|EEZ05389.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_22]
 gi|292638423|gb|EFF56787.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CC
           2a]
 gi|294443682|gb|EFG12431.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 466

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 145/410 (35%), Gaps = 44/410 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +V+ T  V         V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKESTLVIYTPAVPQEHEEI--VYFRNNGFEIQKRAQVLGTITHSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    L     +  A +G  + + G  L L++        + E       
Sbjct: 119 GTHGKTTTSTMTAHLLHQSHVECTAFLGGISKNYGTNLLLSQTSPYT---VIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P++ VIT+  P HL  +   +    +       ++  G + +       +
Sbjct: 171 EFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HM 292
            +  +        +Y++ + +  DF     +  + + +++       +  +  GI     
Sbjct: 225 GISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGIPVSIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ 
Sbjct: 284 IENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKIKNDRIVFLSD-YAHHPSE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISH 403
           +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y    
Sbjct: 340 IKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
             + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 396 APIPGVTSKLIYDNLRPGIEKSMCK-KEDILNILKDKNIEVLITLGAGDI 444


>gi|295086276|emb|CBK67799.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           XB1A]
          Length = 466

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 145/410 (35%), Gaps = 44/410 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +V+ T  V         V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKESTLVIYTPAVPQEHEEI--VYFRNNGFEIQKRAQVLGTITHSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    L     +  A +G  + + G  L L++        + E       
Sbjct: 119 GTHGKTTTSTMTAHLLHQSHVECTAFLGGISKNYGTNLLLSQTSPYT---VIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P++ VIT+  P HL  +   +    +       ++  G + +       +
Sbjct: 171 EFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HM 292
            +  +        +Y++ + +  DF     +  + + +++       +  +  GI     
Sbjct: 225 GISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGIPVSIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ 
Sbjct: 284 IENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKIKNDRIVFLSD-YAHHPSE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISH 403
           +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y    
Sbjct: 340 IKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
             + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 396 APIPGVTSKLIYDNLRPGIEKSMCK-KEDILNILKDKNIEVLITLGAGDI 444


>gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 454

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 114 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASKVAQEVKSDEYLIT 170

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 171 ELSSFQLLGIEE----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 227 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 275 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 332 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 377

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 378 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|153834370|ref|ZP_01987037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
 gi|148869218|gb|EDL68240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
          Length = 452

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 147/410 (35%), Gaps = 33/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D   + +  +       
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQSLQDVIERG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
             ++  +   AD   +  K   + S  EV LQG+ + +V    +G H   N LM +    
Sbjct: 234 -CWTEKQFSGADGDWQAHKLVVDGSKFEVSLQGEKVGIVDWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVAPELACQALGRFINTK---RRLELKGEEQGVTVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
             GE R +AVL        + +  H +     SL++   V+L     +  ++++   +  
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTL-AASLHSADEVFLFQPDSIDWSVQEIADQCK 403

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
              + +  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 404 QPAFVDAEMDSFVAKIVERAQPGDQILVM-SNG-GFGGIHGKLLEQLKQK 451


>gi|121612468|ref|YP_001001284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006178|ref|ZP_02271936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249826|gb|EAQ72785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 427

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 118/382 (30%), Gaps = 57/382 (14%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPL 151
           N+     ++  K  II ITG+ GKTTT   +   L  +       G+     N+      
Sbjct: 47  NECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEK 106

Query: 152 TLARMP-------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           +L   P                DF I E+    L  ++     +     + T I   HL 
Sbjct: 107 SLTTSPILKTLEYLQIATQKKCDFFIMEVSSHAL--VQNRIEGLNFVAKIFTNITQDHLD 164

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E    AK   F         F+N D        A +    ++  +++G    A +
Sbjct: 165 FHGTFENYKKAKELFF---TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALY 213

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKAL 317
           Q++ +    E     V  + ++  +    +G     N+L+    V+ L   D+    KA+
Sbjct: 214 QIKAYSL-EEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELIKPDLKDLEKAI 272

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S F      G+  + A        +   +   P  ++  +  L         + I V G 
Sbjct: 273 SGFGGV--CGRVEQVAKG------VIVDFAHTPDGIEKVLDTLK------NKQLIVVFGA 318

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSET 429
             +  +  +     + E  +   I     S           +  +     +   V   E 
Sbjct: 319 GGDRDKTKRPLMGKIVEHFAKIAI---ITSDNPRSEEPKTIMEEILSGFAKKEKVLMIED 375

Query: 430 MDGLFLFIQSSLVDGDVVVVKS 451
                        + D+VV+  
Sbjct: 376 RKEAIKKALELKENDDLVVILG 397


>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa LESB58]
 gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 448

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 REAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-----ALDLLADDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   +
Sbjct: 160 VLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q        
Sbjct: 213 VVNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFDKLLPVG 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + AL  F    G   R +    +   +  D
Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAF---PGLAHRCQWVRERQGVSYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G         +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++ +    T+D           +GD V++
Sbjct: 375 VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLL 420


>gi|229198024|ref|ZP_04324738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
 gi|228585503|gb|EEK43607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
          Length = 450

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKVL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVGDIVLPGQHNLENILAAMSISKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q +         +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis FRI909]
          Length = 449

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASNVAQEVKSDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 222 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 373 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|304387552|ref|ZP_07369741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           ATCC 13091]
 gi|304338439|gb|EFM04560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           ATCC 13091]
          Length = 458

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 128/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK+ 
Sbjct: 227 LIICNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEANADGSFDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +  D+ TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL +   V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKDADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|293392861|ref|ZP_06637179.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
 gi|291424720|gb|EFE97931.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
          Length = 439

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+    +     L  +  +    
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWAVGVGGNIGLPV-----LELLRQEYQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ +    A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTYSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG    AD       +   ++W+ V  +     
Sbjct: 209 CVVNADDALTMPVRG-----ADPRCISFG----ADVGDYHLNRQLGETWLRVHGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     +++ A        G   R++  L+      I
Sbjct: 260 REMKLSGRHNYTNALAALALADAVNIPRASSLTA---LTTYAGLAHRFQRVLDHNGVCWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       +G    +LG   +  + S      L   L   +I 
Sbjct: 317 NDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LTRYLQGDHI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       ++TM+     I + +  GD+V++
Sbjct: 366 RLYCFGRDGAQLAQLRPD--VATQTDTMEQAMRAIAAVVQPGDMVLL 410


>gi|225867925|ref|YP_002743873.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259509782|sp|C0MGF5|MURC_STRS7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225701201|emb|CAW98126.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 443

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 123/374 (32%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L+  L  +  T   IG    H           
Sbjct: 93  HEFLGEFMKQFTSLGVAGAHGKTSTTGLLSHVLKHMAATSYLIGDGTGHG---------A 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  + +FE       E         P  ++IT I   H   F+G++++ +A  +  + +
Sbjct: 144 ADARYFVFE-----SDEYERHFMPYHPEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + + +       IY +G     DF      + +  S  +V+  
Sbjct: 199 KK--ALFVYGEDEELRKISSPA------PIYYYGFEDTDDFVAFDITRTTNGSDFKVRHH 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            K + +      G H   N    +  + I   D+    + L  F   + R          
Sbjct: 251 HKLIGQFHLPAYGRHNILNATAVIANLFIAGFDMKLVAEHLKSFSGVKRRFTEKVI---- 306

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D       + 
Sbjct: 307 -NDTIIIDDFAHHPTEIIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFAHALNEAD 365

Query: 387 SFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y  +     G   V  L   + R   V   + +  L         D  
Sbjct: 366 SVY-----LAPIYGSAREIDKGDVKVEDLAAKVERPAKVISVDNVSPLLDH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|206976740|ref|ZP_03237644.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217961334|ref|YP_002339902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus AH187]
 gi|229140561|ref|ZP_04269116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
 gi|226711882|sp|B7HM33|MURD_BACC7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206745050|gb|EDZ56453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217063256|gb|ACJ77506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH187]
 gi|228643122|gb|EEK99398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
          Length = 450

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMALSAYSKGQKVL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L          L  F   + R +      N+ F+
Sbjct: 268 VEVGDIVLPGQHNLENILAAMSIAKLLGVSNKAITAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q +         +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|322831189|ref|YP_004211216.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
 gi|321166390|gb|ADW72089.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
          Length = 461

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 128/356 (35%), Gaps = 33/356 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +IA+ G+ GKTTT  M+T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEACGYEPGYVIGGVPGNFEVSARLGNSP----FIVLEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             D+  + + A       + +   G ++N  +  +  K   + S  EV L G+++ +V  
Sbjct: 221 EHDTPLKQVMAMGCWSEQEFV---GDAENCVWDAK--KLTPDSSTFEVYLHGEAVGQVKW 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G H   N LM +     +    + A KAL  F       +R      +   ++ D+ 
Sbjct: 276 NLVGEHNMHNGLMAIAAARHVGVKPEDACKALGDFINAR---RRLELRGVENDVSVYDD- 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A +S L      G  R +AVL      M  MG         L         
Sbjct: 332 FAHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMK-MGMSKNELAPSLGR------A 383

Query: 402 SHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         + +     I   H+S  +D L   +  +   GD ++V  SN 
Sbjct: 384 DEVFLLQPQHIPWQVAEVAEHCIQPAHWSADVDSLVDMVVKASQPGDHILVM-SNG 438


>gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 454

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 146/412 (35%), Gaps = 54/412 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALN--------KLAVAARL 104
           +      GA ++  +  +             P    D+ + A               A  
Sbjct: 49  VAELRALGATVITGSHPVALFEEGFHYLFKNPGIRYDNPMVAEAIKREIPVLTEPELAYE 108

Query: 105 RSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160
            S+A  +++TGS GKTTT  ++ + L    +    YA       +IG+PL+ +A+     
Sbjct: 109 VSEADWVSVTGSNGKTTTTTLIALMLNYQRAQGHAYAA-----GNIGIPLSEVAQKATAK 163

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T  V+P +AV+T I  AHL      E    AK  I +    +
Sbjct: 164 DTMVTELSSFQLMG----TTTVKPKVAVLTNIYEAHLDYHGTRENYVQAKMRIVQNQTAS 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D      L  ++ A  +      G S+     ++  + C +    EV +    
Sbjct: 220 DYFVVNWDLPELRTLSQQTKAQ-VVPFSRLGTSEEG-AYVKDGQLCFKG---EVIMPVTD 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +    +  G H  +N L  L    ++    +  I+ L+ F   +    R +         
Sbjct: 275 I----NVPGDHNVENALAALAAAKLMGQSNEAIIEVLTTFTGVK---HRMQFVKEFAGRR 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+    Q         + + G +             L ++L   +
Sbjct: 328 FYNDSKATNMEATEVALKSFKQ-------PIVLIAGGLDRGFTFEP-----LTDLL-KAH 374

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV 449
           +  + L G     L      +  +   E +D L   + ++     +GDV+++
Sbjct: 375 VKAIILYGETKQLLAQTAKEAG-IETIEIVDQLTEAVPAAYAASQEGDVILL 425


>gi|215485254|ref|YP_002327685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312966216|ref|ZP_07780442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|215263326|emb|CAS07641.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamateligase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289459|gb|EFR17353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|320197461|gb|EFW72075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           WV_060327]
 gi|323190230|gb|EFZ75506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           RN587/1]
          Length = 438

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVC 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     + + +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLATRVQPGDMVLL 410


>gi|160896915|ref|YP_001562497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
 gi|160362499|gb|ABX34112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
          Length = 650

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 135/394 (34%), Gaps = 51/394 (12%)

Query: 83  IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +PV G  D+   AL  L+ A     + T++ ITG+ GKTT   +    L       A  G
Sbjct: 242 LPVGGELDLFAMALKALSAAHG--YRPTVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAG 299

Query: 142 SYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +    +   LT A +  +      + EL    L  ++    +  P  A +  I   HL  
Sbjct: 300 NIGPTLLDTLTQA-IDAETLPQAWVLELSSFQLDGVQ----MFEPTAAAVLNITQDHLDW 354

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-------KAKSHALGIKTIYSFGK 252
              +   A AKA IF     +GT+ LN +D     +         K      +   +FG 
Sbjct: 355 HGSLRAYADAKACIF---GSSGTMVLNREDPEVMRMLPAPVVPPGKRQKPQQRAHITFGG 411

Query: 253 S---KNADFQLRKWKQCS---EQSWMEVQLQGKSMEVV----------HHGIGYHMAQNM 296
               +  DF L      +        +   +GK+ E +              G H A N 
Sbjct: 412 DMPRRPGDFGLEVVSGMTWLVRAHEADETAKGKNAEDLYIQRLMPADALRIRGRHNAINA 471

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L + S     +   +          G   R +           D+S   N  +  AA
Sbjct: 472 LSALALASAGGCTLAPLLYG---LREYRGEPHRVQPIGRVNGVEYYDDSKGTNVGATVAA 528

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +S L       + R + +LG   +  + S      +A V    ++    L G     ++ 
Sbjct: 529 LSGLG-----PDHRIVVILGGDGKGQDFSPL----VAPV--SRHVRTAVLIGRDAGRIRA 577

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AL    + +  + TM        S   +GD V++
Sbjct: 578 ALQDCGVPLVDATTMADAVELAASRAHEGDAVLL 611


>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
           patens]
 gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 138/468 (29%), Gaps = 70/468 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---------- 82
           DSR     E   A+ G    G   +  A+ +GA ++ ++++                   
Sbjct: 44  DSRQDLNGET-VAVIGLGVSGRSVVKLALSRGANVLALDSNPSCVPLEEDSGFEGYDLNR 102

Query: 83  ------------------------IPVFGVDDVLGALNKL--------AVAARLRSKATI 110
                                   +PV    D+  A+             AA L     +
Sbjct: 103 VQTELGPHKRETLLKASQLVLSPGVPVTH-PDIAAAIQAGVPAFSELGFAAAALPGNIKV 161

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDF---GIFE 166
            A+TG+ GK+T     +  L +        G+    +    L     P +       + E
Sbjct: 162 AAVTGTNGKSTVTTFTSQILRNAGVRTFVGGNLGTPLSDGVLQCLAFPAEDPPFSVAVVE 221

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L     L     P  AVI  + P HL     +E   S K  +F  +E +    + 
Sbjct: 222 VSSYQL----ELPGSFHPKAAVILNLTPDHLERHKSMEAYGSIKCRVFSRMEASDVAIIP 277

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     L A S +   +           D   R+       + +E +L          
Sbjct: 278 QSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDARRAIVVVPTTGVEARL----YLSSLQ 333

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H A N      +   L   + +     ++ H K    +      +      +++S 
Sbjct: 334 AVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAPPHRMEIVHQDDQGVVWVNDSK 393

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             N  S    I  +        G++  VL  G               L E L  +    V
Sbjct: 394 ATNVDSTSVGIRSI-------VGKKAVVLLGGQAKVGVGSGGLGFGVLVESLQSHRA--V 444

Query: 405 WLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G   LA++  L     SI   Y+E          S    GD V++
Sbjct: 445 VLFGASGLAIEQELRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLL 492


>gi|195953887|ref|YP_002122177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|254766052|sp|B4U609|MURD_HYDS0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195933499|gb|ACG58199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 411

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 116/355 (32%), Gaps = 45/355 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +  +A R      IIA+TG+ GK+TT  ++    S   K     G+  + I       
Sbjct: 72  IGETELAYRFYKGKNIIAVTGTDGKSTTVHLIHHFTS--FKEGGNFGTPFSEIV------ 123

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D +    E                RP++ V    +  HL     +E+   +K +IF
Sbjct: 124 -LDNDKENVALEASSFQG----KTLDTFRPNVGVFLNFSKDHLDWHPSLEDYLLSKQKIF 178

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +   +   + LN         K       +     FG++ +            E     +
Sbjct: 179 KNQTQEDILILNA-------QKPVCDTPSLAKKIFFGENGDLKVVGSDVYYKDELLIENI 231

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                         G H   N+ +   +   +   ++   K L  F        RY+   
Sbjct: 232 SHP--------SLKGLHNLYNIAVASFVAFSMGISLEEIKKNLETFEALPF---RYQYLG 280

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N     + ++S +    ++ +A+          +   + + G + + G+ S         
Sbjct: 281 NFEGIDICNDSKSTTVNALMSALES-------TKAPILLIAGGIDKGGDFSSIE------ 327

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 I  V+L G     +KD +   + V+  E ++   L ++     GD ++ 
Sbjct: 328 -AYKDKIKAVFLYGKDKNLIKDQIEHFLKVYVLEDLESALLKVKEQARKGDTILF 381


>gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU045]
          Length = 449

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIG---YVASKVAQEVKSDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 166 ELSSFQLLGIEE----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT Y F   +  D   ++          + +  +       
Sbjct: 222 N----YHQRHLIESENLEAKTFY-FSTQQEVDGIYIKDGFIVFNGIRI-INTKD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    I    V   + +L  F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFDQ--------PIIWLCGGLDRGNEFDEL------IPYMENVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 373 VVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|309783083|ref|ZP_07677802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918191|gb|EFP63869.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia sp. 5_7_47FAA]
          Length = 461

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 132/380 (34%), Gaps = 40/380 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+    + +F + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWVLQDAG---YNPGFLVGGVPRNFGLSARLTESNFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + +  +        +  FG    + +++      S+    +V   G+ +  V
Sbjct: 219 VNGREDSLKRVLERG---CWSEVEQFGAEGGSGWKIANL---SDDDSFDVVFNGQPLGRV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 RWALQGDHNRMNALGAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVNDVTVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYN 400
           + +  +P +++  I  L      GEGR +AVL         S +  + + +     SL  
Sbjct: 330 D-FAHHPTAIRTTIEGLR--RRVGEGRILAVLE------PRSNTMKLGVMKQALPDSLSG 380

Query: 401 ISHVWLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              ++  G           L  AL P          +  L   + ++   GD V+V  SN
Sbjct: 381 ADQIFAYGAANGRDAIGWDLAGALAPLGQRAKAFSDLTALVDAVTAAARPGDHVLVM-SN 439

Query: 454 SCGFY----RLINLLLEEFP 469
             GF     +L++ L E   
Sbjct: 440 G-GFGGVHQKLLDALAERAE 458


>gi|323705831|ref|ZP_08117403.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534827|gb|EGB24606.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 875

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 159/467 (34%), Gaps = 67/467 (14%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAV-----------QKGAGLVVVNTDMVASIGSLS 82
           ++ I P     A++     G D     +           + GA   ++  +    I    
Sbjct: 395 TKEIHPDNIEIAVRAAKAIGLDIAGIDITMENISLPLNRENGA---IIEVNAAPGIRMHH 451

Query: 83  IP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            P      DV  A+  +      ++   II++TG+ GKTTT  M++  L     T     
Sbjct: 452 YPSQGKPRDVAKAIIDMLYPKGSKATIPIISVTGTNGKTTTVRMISHILKIYGYTVGMTS 511

Query: 142 SYNNHIG----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +   ++            P +      D +     L  +  G +R         I +IT 
Sbjct: 512 TDGIYVDDVCIYKGDNSGPKSARTCLADKNIDAAVLETARGGIVREGLGYDLADIGIITN 571

Query: 192 IAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+  HL       +E++A  K+ + E ++K G   LN DD     +  ++       I  
Sbjct: 572 ISEDHLGIDGIETLEDLAFVKSLVVEAVKKDGYSVLNADDPMTPYIAKRAKG----KIIY 627

Query: 250 FGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           F   +N                L+          +   ++   +    +G   +  +N +
Sbjct: 628 FSMHENNLTIKRHLENGGISVYLKDDTIVIANGEIIPIVKVDEIPATLNGKVLYNVENAM 687

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++     +   V+   + +  F+  E          N G F ++ + Y  N   +K  I
Sbjct: 688 ASISACYGIKIPVNVISRGIRSFYCDENHNPGRFNIFNIGSFRVLVD-YGHNIDGIKKVI 746

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------S 407
               +++P+   R I V+G     G+ S S  + + E+        V++           
Sbjct: 747 ESARKLNPN---RLIGVIGVP---GDRSDSSTLKVGEICGE-GFDKVYIKEDLDLRGRKP 799

Query: 408 GF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G       +  LK  L +       + +D L   +  ++  GD++V+
Sbjct: 800 GEVAKLLEIGVLKGGLSKEDVKVILKEVDALKAAMYEAM-PGDLIVI 845


>gi|237749171|ref|ZP_04579651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380533|gb|EEO30624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 495

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 149/420 (35%), Gaps = 52/420 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F + AV  G    V   +++       IPV+   ++     K         K  +IA+T
Sbjct: 67  QFDIIAVSPGLRPDVELKEILPFAKEHGIPVWSEIEMFAQALKGLEEG-TAYKPDVIAVT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTT   +         KT    G+ +   + V L +       D  + EL    L 
Sbjct: 126 GTNGKTTVTSLTGHMCERAGKTVRLAGNISPAALDVLLDVIEKKQLPDVWVLELSSFQL- 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              F T+ ++ + A +  +   HL     +E    AKA IF    +     LN +D+   
Sbjct: 185 ---FTTYTLQANAATVLNLTQDHLDWHGSMEAYGEAKARIF---GEKTVRVLNREDAAVM 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------------M 281
            + +         + +FG  +  +          +  W+ V    +             +
Sbjct: 239 KMASADA-----PVVTFGTDEPLEPSSFGLHLDRDMEWLAVMSPVEDGIVRRNKKNDAPL 293

Query: 282 EVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E     +         G H A N L  L +   +       ++ALS +    G   R   
Sbjct: 294 EYAVQNLMPAGALKIRGRHNASNALAALALCRAIHLPFAPLLQALSDY---RGEPHRVEL 350

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHI 390
                  + ID+S   N  +  AA++ L +     +GR+  I + G + +  + S     
Sbjct: 351 IATVKTVSYIDDSKGTNVGATVAAVNGLGE-----KGRKNIILIAGGLGKDQDFSP---- 401

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+EV++ Y +  V L G     + DAL        YS++++           D D V++
Sbjct: 402 -LSEVVAQY-VKAVMLIGKDARQIHDALAETGASFVYSDSLEHAVGEAAKMAQDNDTVLL 459


>gi|332142426|ref|YP_004428164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552448|gb|AEA99166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 479

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 127/385 (32%), Gaps = 36/385 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           + V       + V G  ++   LN    +        ++ ITGS GKTT   ++   L++
Sbjct: 87  EQVELAKQCGVEVIGDVELFARLNTSFKS--DTPAKRVVGITGSNGKTTVTLLVNHLLNA 144

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                   G+    +     L  +  D D  + EL    L      T  +    A +  I
Sbjct: 145 CGVKSIEAGNVGRPV-----LEALESDADVVVMELSSFQL----ETTSSLVLEAATVLNI 195

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLE-----KTGTIFLNYD--DSFFELLKAKSHALG-I 244
           +  HL     +E    AK  IF   +     + G      D  +   +    K++  G +
Sbjct: 196 SDDHLDRHGTLEHYVDAKHRIFANAKSAVVWRDGEFVAPDDALNVEGQANAQKANQNGLL 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           ++   +G   +            +   +    +        H  G H   N++  LGI  
Sbjct: 256 RSAIEYGLGASD--SGFSIVTMLDSKHIAFNGKPIIALSDIHLAGMHNVLNIMAALGICC 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D A+K L  F        R            ID+S   N   + A I+ L  IS
Sbjct: 314 KLGVSPDQAVKHLHSFKSAP---HRCVEVARVNSVRYIDDSKATN---IGATIAALEGIS 367

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           P   G+ + + G     G+   +    LA  L+ Y +SHV+  G        +     H 
Sbjct: 368 PTIAGKLLLIAG-----GDAKGADISSLAPYLTQY-VSHVFALGKDAHLFAQSFA---HT 418

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
               TM             GD V++
Sbjct: 419 TQVATMKEAVKGALRLAAPGDAVLL 443


>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 454

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 126/365 (34%), Gaps = 45/365 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R   KA I AITG+ GKTTT  +L     +  +     G+    +   +  A
Sbjct: 96  LGEVEFAYRFS-KAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYAVMEA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E+    L  I+      +P I+ I  I P HL+     E     K  IF
Sbjct: 155 T---EGDFIVAEISSFQLETIKEF----KPKISCIINITPDHLNRHKTFESYRDIKGRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WME 273
           E         LN+DD     LK K+       ++ F +  +    L       + S ++ 
Sbjct: 208 ENQRGDEYTVLNFDDPVTWSLKNKAKC----RVFPFSRKSS----LENGAYVKDGSIYIS 259

Query: 274 VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           V    K +  +   +  G H  +N L    +  +     +     L  F   E    R  
Sbjct: 260 VNGNAKKIIDIEEIYIPGEHNLENALAASSVAYLSGISANVIASTLKSFKGVE---HRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSF 388
                      ++S   NP +   AI  L           + + G      E  E  ++F
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKT-------PIVLIAGGYDKGSEFDEFVKAF 369

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDG 444
           +  +           + L G     ++D   +       + ++ T++        S  +G
Sbjct: 370 NGKV---------KKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEG 420

Query: 445 DVVVV 449
           D V++
Sbjct: 421 DSVLL 425


>gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
 gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
          Length = 428

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 137/449 (30%), Gaps = 88/449 (19%)

Query: 30  ISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           I+ +S        F    +        F   AV+KGA                   +  V
Sbjct: 10  ITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGA------------------KIIDV 46

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YN 144
           ++    L        +     II ITG+ GKTTT   +   L  +       G+     N
Sbjct: 47  EETKKLLG-------IDETIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFIN 99

Query: 145 NHIGVPLTLARMP-------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +      +L   P                +F + E+    L  ++     +     + T 
Sbjct: 100 DEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHAL--VQNRIEGLEFAAKIFTN 157

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL      E    AK   F         F+N D        A      +K  Y++G
Sbjct: 158 LTQDHLDFHGSFENYKKAKESFF---TDESLKFINKD--------AFHINFNVKNAYTYG 206

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-V 310
               A +Q++ +   +E   + V  + +S  +    +G     N+L     V+ L    +
Sbjct: 207 IENPAFYQVKAYALENEIDAL-VLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVKPNL 265

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +A+S F    GR ++            +   +   P  ++  +  L          
Sbjct: 266 ADLERAISGFGGVCGRVEKI--------VEGVIVDFAHTPDGIEKVLDSLK------NKN 311

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY---- 426
            I V G     G+  +S    + ++++ Y  + +  S         ++ + I   +    
Sbjct: 312 LIVVFGA---GGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKN 368

Query: 427 ----SETMDGLFLFIQSSLVDGDVVVVKS 451
                E  +           + D+V++  
Sbjct: 369 TPLMIENRELAIYKALELKKEDDLVIILG 397


>gi|331645198|ref|ZP_08346309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
 gi|330909935|gb|EGH38445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           AA86]
 gi|331045955|gb|EGI18074.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
          Length = 438

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAVLRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|157415861|ref|YP_001483117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386825|gb|ABV53140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748498|gb|ADN91768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931687|gb|EFV10648.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 427

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 128/423 (30%), Gaps = 82/423 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F   A++KGA                   +  V++    L       ++  K  II IT
Sbjct: 31  KFHAQALEKGA------------------KIIDVNECKKLL-------KIDEKIQIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMP------------- 157
           G+ GKTTT   +   L  +       G+     N+      +L   P             
Sbjct: 66  GTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQ 125

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              DF I E+    L  ++     ++    + T I   HL      E    AK   F   
Sbjct: 126 KKCDFFIMEVSSHAL--VQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEAKELFF--- 180

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                 F+N D        A +    ++  +++G    A +Q++ +    E        +
Sbjct: 181 TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEGISAIATNK 231

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++  +    +G     N+L+    V+ L   D+    KA+S F      G+  + A   
Sbjct: 232 NQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGRVEQVAKG- 288

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +   +   P  ++  +  L         + I V G   +  +  +     + E  
Sbjct: 289 -----VIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGTIVEHF 337

Query: 397 SLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   I     S           +  +     +   V   E              + D+VV
Sbjct: 338 AKIAI---ITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVV 394

Query: 449 VKS 451
           +  
Sbjct: 395 ILG 397


>gi|315179012|gb|ADT85926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii NCTC 11218]
          Length = 456

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 139/394 (35%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVVGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDHLLYDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 VLEHCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G I     D+    +  +      +T
Sbjct: 181 LVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPRQDAALADVLRR--GCWSET 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    +  ++Q  K   C + S   V  QG+ +  V    +G H   N LMT+     
Sbjct: 239 EFS---GEQGEWQAEKI--CKDGSQFHVLHQGERVGTVTWDLVGEHNVNNALMTIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVTPDLACEALGSFINTK---RRLELKGTENGVTVYDD-FAHHPTAIELTLEGLR--NK 347

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
            G+ + IAVL      M  +G   ++    LA   S+Y    ++       A++D A   
Sbjct: 348 VGDRKIIAVLEPRSATMK-LGVHKETLAASLAAADSVY----LFQPSNIPWAVQDVADQC 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           S   H S+ M      I      GD ++V  SN 
Sbjct: 403 SQPAHVSDNMAEFVAQICQEAKPGDQILVM-SNG 435


>gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
          Length = 494

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 61  GHDASSLDLLPGGATAVVTTHAAIPKTNPELVEARRRGIPVVLRPAVLAKLMA------- 113

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 114 --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 164 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVSGGALV 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 224 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 282

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 283 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
                + + Y  +P  + A ++    +   G+G R  V+     +   +++F  +     
Sbjct: 343 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQ-PHLYSRTKAFAAEFGRAL 401

Query: 395 -------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  VL +Y      L+G    ++ + +  ++ + Y      +   + ++   GDV+
Sbjct: 402 NAADEVFVLDVYGAREQPLAGVSGASVAEHV--TVPMRYVPDFSAVAQQVAAAASPGDVI 459

Query: 448 VVKSSNSC 455
           V   +   
Sbjct: 460 VTMGAGDV 467


>gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter hepaticus ATCC 51449]
 gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus
           ATCC 51449]
          Length = 463

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 128/393 (32%), Gaps = 70/393 (17%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVP 150
           LN + +A    +   I+ ITG+ GKTTT  ++   L  +    A +G+     N H   P
Sbjct: 74  LNDILMANFSHNSPNIVGITGTNGKTTTAAIIYSILLDLGFNVALLGTRGFFINEHRIKP 133

Query: 151 LTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             L               M    +F I E+  SH  E   +  L    + ++T I   HL
Sbjct: 134 KGLTTPSMLELYENLCIAMEQKCNFFIMEVS-SHAIEQERIAGL-DFALKILTNITSDHL 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA- 256
                +EE    K   FEG    G   LN D+ +             K  Y +G  K   
Sbjct: 192 DYHKSVEEYRRIKNSFFEG---EGRKLLNADEPYI--------YCTDKAAYFYGIEKKGN 240

Query: 257 ---DFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVD 311
              D    +       SW E   +  +   +  H  G H   N L  +G V ILT   ++
Sbjct: 241 LSVDVYALENGIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIGAVKILTQEPLE 300

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +AL  F    GR +            L+   +      M                 +
Sbjct: 301 RIAEALEHFGGVSGRMEVVH------NMPLVIVDFAHTYDGMYQIFESFRH-------CK 347

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           IAV+      G+  +S    +      +    ++++  +                +E+  
Sbjct: 348 IAVV--FGAGGDRDKSKRPKMGACAQQF-AHKIYITSDNPR--------------TESPK 390

Query: 432 GLFLFIQSSLVDGDVVVVKSSNS----CGFYRL 460
            +   I S + DG+ V V++            L
Sbjct: 391 SIIEDILSGMQDGEYVFVEADRKKAIYMALESL 423


>gi|188026372|ref|ZP_02961838.2| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
 gi|188020136|gb|EDU58176.1| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 125/353 (35%), Gaps = 29/353 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    +  V   L   P    F + E  
Sbjct: 93  VLAVAGTHGKTTTAGMLAWILEDCGYKPGFLIGGVPGNFEVSAQLGESP----FFVIEAD 148

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  +E I      +   +  +G IF+ 
Sbjct: 149 EYDCAFFDKRSKFVHYSPRTLVLNNLEFDHADIFENLEAIQKQFHHLVRIVPASGKIFMP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             D+  + +         + +      ++ ++Q +K     + S  EV  Q + + EV  
Sbjct: 209 DSDNNLKQVMTMGCWSEQEFV-----GEHGEWQAKKLNH--DGSQFEVYYQQQRVGEVNW 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  QN LM +     +      A  AL  F       +R      +   ++ D+ 
Sbjct: 262 SQVGNHNIQNALMAIAAAHHVGVPAKEACFALGKFINAR---RRLELRGVEYGVSVYDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R +AVL    E    +    ++ +++         V
Sbjct: 318 FAHHPTAILATLEALRS-KVGGTSRILAVL----EPRSNTMKLGVNKSDIAPALGRADEV 372

Query: 405 WLSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +L    ++  +   +         +S  +D L   +  +   GD ++V  SN 
Sbjct: 373 FLFQPSNIPWMVTEIAEKCVQPARWSGDIDALAQMVIETAQPGDHILVM-SNG 424


>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
 gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
          Length = 459

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 129/369 (34%), Gaps = 42/369 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
               +     II+ TG+ GKTTT   +   L+         G+          L     +
Sbjct: 84  AYKYVDKNIKIISFTGTNGKTTTSTKMAELLNFAGFRAKLAGNAGFSF---AKLVADEEE 140

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +D+ + EL    L         +  +IA I  + P HL+ +  +E+    K  IF+    
Sbjct: 141 LDYIVLELSSYQLEN----NPQIHSNIAGIINLTPDHLTRYESVEDYYITKFAIFDKQTG 196

Query: 220 TGTIFLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWME 273
                +N DD  F  L   +  +  +  + +Y   ++K   F         +   +   E
Sbjct: 197 DDFALINLDDEVFAELYERREINEKMKAQKVYLSKETKGTVFVYENNIRIMKDLSKRIDE 256

Query: 274 VQLQGKSMEVV---------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +Q  G+ ++ +             G H  +NML  +    IL    +             
Sbjct: 257 IQNFGEKIDEISEILLKTEELSLKGRHNLENMLFLISSAKILNVKNEKLA---EFLKSTN 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +G    I++S   N  S   AI   +          I +LG     G+ 
Sbjct: 314 ALEHRLENFFVKGNTAFINDSKGTNVESTLKAIDSFNN-------SIIMILG-----GDD 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL- 441
            +  ++ L E +    +  V+L G +   L D + +  + +Y   ET++ +  +++ ++ 
Sbjct: 362 KKIDNMPLIERVKE-KVDFVYLIGDNAQILIDDMEKIGYKNYKNLETVENVLNYLKQNVD 420

Query: 442 -VDGDVVVV 449
                 V+ 
Sbjct: 421 FSQNQTVLF 429


>gi|255002719|ref|ZP_05277683.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Puerto Rico]
 gi|255003848|ref|ZP_05278649.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Virginia]
          Length = 474

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 143/425 (33%), Gaps = 50/425 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------- 109
           +   + KG  ++  +         + +    + D    L     A +L  + T       
Sbjct: 48  VQALLDKGVHVMPDHRADNVQNADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKAL 107

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                I ++GS GKT+T  M+   +          IG    H G    +       ++ +
Sbjct: 108 GAGRTIVVSGSHGKTSTTGMIASIMEHAGMDPTVFIGGIAFHYGNNYKMGAG----EWAV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G        +   IAV+T +   H   +S +E +    ++    ++  G   
Sbjct: 164 VEGDESDAGFTE-----LPCEIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGASV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEV 283
           +         L          +  ++G  +  D +        + +  ++  L G+ +  
Sbjct: 219 MP------SRLSFTLGNGAKCSKITYGL-EGGDLRASNTTYMGDATVFDIVGLNGEEICC 271

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L    +   +           +      G G+R+    N G  T 
Sbjct: 272 GVRLPVPGRHNVENALAAAAVAKHIGVG---CNYIKAGLEGFMGVGRRFEIIANVGGVTF 328

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ Y  +P  ++A+ +     +    GR I +L          Q F  D    +S ++ 
Sbjct: 329 VDD-YAHHPTEIEASRNAAKLSTTS--GRVIGIL--QPHRFTRVQHFFKDFTSAISKFDY 383

Query: 401 --ISHVWLSGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G  V++  ++L             V ++ T D +   + S    GDVV+  
Sbjct: 384 LILTDVYPAGEEVISGCESLDIVREMKSRGFDQVVHASTPDTITDIVASVAQPGDVVIAM 443

Query: 451 SSNSC 455
            + S 
Sbjct: 444 GAGSI 448


>gi|19745509|ref|NP_606645.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS8232]
 gi|25008810|sp|Q8P2E1|MURC_STRP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19747627|gb|AAL97144.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes MGAS8232]
          Length = 442

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  +  DF      + +  S  +V+ QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D+      L  F   +   +R+   +     T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDMALVADHLKTFSGVK---RRFTEKIVND--TIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVKVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 483

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 160/479 (33%), Gaps = 67/479 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +      +   + +S DSR       FFA KG ++   +++       A
Sbjct: 16  NFREISSA-GEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFKK-EYLTDLE---A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+           ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAANFYKFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVP------------LTLARMPV-----DVDFGIF 165
                 L  +     A + +    +               L L  M        +   + 
Sbjct: 125 YFAKSILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           E+            + +   + V   I+P H+       +E+    K ++   L+ +   
Sbjct: 185 EVSSQAYK--TERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQL---LKNSRYF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K + +   I   +    S+N   + +     ++ S         S E 
Sbjct: 240 VANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHFVTDGSV--------SGEF 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G    +N L T      L A  +   + L+        G+        G    ID
Sbjct: 292 DIRLLGRFNQENALATALATKALGASFENIRQGLASA---IVPGRMELLTAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S++  + V   +  H  G+   VLG     G   +S   D  +V+  +   +
Sbjct: 349 --YAHNGLSLENLVEV---VEDHHAGQLFLVLGS---TGNKGESRRKDFGQVIENHPRLN 400

Query: 404 VWLSG-----FHVLALKDALPR--SIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KSS 452
           V L+       +   + D +    S  + +    +  +   I  +    D V++  K +
Sbjct: 401 VILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGA 459


>gi|88812510|ref|ZP_01127759.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
 gi|88790296|gb|EAR21414.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
          Length = 457

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 132/365 (36%), Gaps = 32/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+TG+ GKTTT  +L   L     +    IG    + G    L       D  + E  
Sbjct: 105 VLAVTGTHGKTTTSSLLAWILEYAGLSPGFLIGGVPGNFGYSARLG----SGDLFVIEGD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  RP   VI  +   H   F  +  I      +   +  TG I  N
Sbjct: 161 EYDTAFFDKRSKFIHFRPRTVVINNLEFDHADIFPDLAAIQRQFHYLIRTVPSTGLIIAN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + +           +  FG   N D++L         +   +  +G++  +   
Sbjct: 221 GDD---QTITDTLALGCWTPVIRFGTGVNNDWRLEAI--DGPNARATLTGKGQNRAITLP 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A+N+L  L         +D  I+AL  F     R +R       G   L D+ +
Sbjct: 276 LPGEHNARNILAALLAAQHTGVTLDQGIEALRHFRGVRRRLERRGIV---GGVELYDD-F 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++ A I+ L       +GR +AVL    E    +     H +     SL     V
Sbjct: 332 AHHPTAIAATIAALRG---RHQGRILAVL----EPRSNTMRLGVHRNTL-AASLQQADRV 383

Query: 405 WLSGFHVLA--LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           ++     L   L+DA           +E ++ L  +I ++   GD V+V  SN   F  +
Sbjct: 384 FVYRPRTLEWNLEDAFAPLLGERALITEDIECLIDYITAAAQIGDAVLVM-SNG-AFENI 441

Query: 461 INLLL 465
              LL
Sbjct: 442 HERLL 446


>gi|313668293|ref|YP_004048577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ST-640]
 gi|313005755|emb|CBN87209.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria lactamica 020-06]
          Length = 458

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 126/379 (33%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 103 HRHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSK 162

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  AV+  +   H   F+ +  I +    +   +
Sbjct: 163 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTV 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG          +  + +     +V L 
Sbjct: 223 PSEGLIVCNG---QQQSLQDTLDKGCWTPVEKFGTE-----YGWQVGEANADGSFDVLLD 274

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK+   V    +G H   N L  +        D+ TA +AL  F   +   +R       
Sbjct: 275 GKTAGRVKWDLMGRHNRMNALAVIAAARHAGVDIRTACEALGAFKNVK---RRMEIKGTA 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 332 NGITVYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKAAL---- 383

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL     V+    G      +   P    +H  +  D     I  +   GD ++V 
Sbjct: 384 --PASLKEADQVFCYAGGVDWDVAEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM 441

Query: 451 SSNSCGF----YRLINLLL 465
            SN  GF     +L++ L 
Sbjct: 442 -SNG-GFGGIHGKLLDALK 458


>gi|149275985|ref|ZP_01882130.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
 gi|149233413|gb|EDM38787.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
          Length = 451

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 128/373 (34%), Gaps = 53/373 (14%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ++   L+     + C       I        +  + D  + E    
Sbjct: 116 IAVAGTHGKTTTSSIIAHVLTDTG--FGCTAFLGG-IASNYNSNFLLGNNDVVVVEA--- 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P IAV+T++   HL  +    ++  +       L+K GT+++     
Sbjct: 170 --DEYDRSFLTLHPDIAVVTSMDADHLDIYGDASQLVESFGLFAGQLKKEGTLYV----- 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHG 287
                      L ++   S+             +   E +              ++    
Sbjct: 223 --------KAGLPLQQGISYSAVDEGRLMGTNIRV--EGARFVFDYVDGDFSIADLQLMV 272

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N +  + +   L  + +   KA+  F   +   +R+   +N   +  ID+ Y 
Sbjct: 273 PGRHNVENAVAAIAVALRLGIEPELVKKAIGNFKGVK---RRFEYIVNTSEYVYIDD-YA 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSL 398
            +P  +KA    + Q+ P    +  AV      +   ++ F  D A+V         L +
Sbjct: 329 HHPEELKACFGAIRQLYPEK--KLTAVF--QPHLFTRTRDFADDFAKVLGTVDDLLLLDI 384

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           Y    + L G     L + +        +   D +   I+  +   ++++   +      
Sbjct: 385 YPARELPLEGIDAEYLLEKITLDRKEVCA--KDEVLEKIR--MRKPELLLTVGAGD---- 436

Query: 459 RLINLLLEEFPAI 471
             I+ L+E   A+
Sbjct: 437 --IDTLIEPLKAL 447


>gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
 gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
          Length = 427

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 113/363 (31%), Gaps = 67/363 (18%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F   A++KGA                   +  V++    L       ++     II IT
Sbjct: 31  NFASDALEKGA------------------KIIDVEECKKLL-------KIDENIKIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVD 159
           G+ GKTTT   +   L  +       G+    I                  L   ++   
Sbjct: 66  GTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQLATQ 125

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                F + +S    ++     ++    + T I   HL      E   +AK   F     
Sbjct: 126 KKCDFFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFF---TD 182

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               F+N D      L  K     ++  +++G    + +Q++ +    +     V L+ +
Sbjct: 183 ESLKFINKD-----TLMIK---FNVRNAFTYGIENPSLYQVKAYSL-EDGISAIVALKDQ 233

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  +    +G     N+L     V+ L    +    KA+S F    G   R     N   
Sbjct: 234 SFHIDSPLLGLFNLYNLLAASACVNELVKPNLKDLEKAISGFGGVCG---RVEQVANG-- 288

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I   +   P  ++  +  L         + I V G   +  +  +     + E  + 
Sbjct: 289 ---IIVDFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHFAK 339

Query: 399 YNI 401
             I
Sbjct: 340 IAI 342


>gi|319638325|ref|ZP_07993088.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317400598|gb|EFV81256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 458

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 127/379 (33%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 103 HQHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSK 162

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  A++  +   H   F+ +  I +    +   +
Sbjct: 163 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLGAIQTQFHHLVRTV 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG  +   +++            +V   
Sbjct: 223 PSEGLIVCNG---QQQSLQETLDKGCWTPVEKFGTEQG--WRVGTVHADG---SFDVCHH 274

Query: 278 GKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+++  V    +G H   N L  +        D+ TA +ALS F   +   +R       
Sbjct: 275 GETVGHVAWELMGEHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTV 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 332 NGITVYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAAL---- 383

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL     V+    G      +   P    +H  +  +     I  +   GD ++V 
Sbjct: 384 --PASLKGADQVFCYAGGVDWNVAEALAPLGGKLHVGKDFNAFVAEIVKNAEAGDHILVM 441

Query: 451 SSNSCGF----YRLINLLL 465
            SN  GF     +L+  L 
Sbjct: 442 -SNG-GFGGIHGKLLEALK 458


>gi|153837900|ref|ZP_01990567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
 gi|149748678|gb|EDM59529.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 142/394 (36%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQALADVLER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F   ++ D+Q    K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 236 TERQFS-GEDGDWQAH--KLVLDGSKFEVALQGEKVGTVEWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPELACQALGRFINTK---RRLELKGEEQGITVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LA+  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAD--SLHSADEVFLFQPDNIEWSVQDIAEQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +  MD     I      GD ++V  SN 
Sbjct: 403 KQPAFVDADMDNFVAKIVERAQPGDQILVM-SNG 435


>gi|226328330|ref|ZP_03803848.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
 gi|225203063|gb|EEG85417.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
          Length = 436

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 133/349 (38%), Gaps = 44/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS GK+T   ++    S+        G+        LTL   P   D  
Sbjct: 101 REAKAPIVAITGSNGKSTVTTLVGEMASADGIRVGVGGNIGVP---ALTLLTEP--HDLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A +  I+  H++ +  G+E+   AK  I++  +    
Sbjct: 156 VLELSSFQL----ETTYSLKAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDNAKA--- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
              N DD+    L  K +        SFG  +  D+QL    +        ++++G+ + 
Sbjct: 209 CVYNEDDALTLPLAGKDN-----RCVSFGVGQG-DYQLDNINRI-------LKVKGEKVL 255

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +  G H   N L  L +   +       I    V     G   R++   +     
Sbjct: 256 STAEMYLSGQHNYTNALAALALADAVGISRKATI---EVLKTYHGLAHRFQLVYSHQNVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       EG    +LG     G+   +    L   +S  N
Sbjct: 313 WINDSKATNVGSTEAALRGL-----EVEGTLHLLLG-----GDGKSADFTSLLPYISGDN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G    AL +  P    +    TM+     +  ++  GD+V++
Sbjct: 363 I-RLYCFGQDGQALANLRPDVSLLTV--TMEEAMRALAPTVKSGDMVLL 408


>gi|295098592|emb|CBK87682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 438

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +  K     G+          L  +    +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGKNVGVGGNIGLP-----ALMLLDKGCELF 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCISFGINMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMMLSGQHNYTNALAALALADAVGLPRSSSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L + L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLYLLLGGDGKSADFS-----SLKQYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 365 V-RLYCFGRDGSELAALRPE--VAEQTETMEQAMRLIAPRVKPGDMVLL 410


>gi|170016886|ref|YP_001727805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
 gi|226711918|sp|B1MXV9|MURD_LEUCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169803743|gb|ACA82361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
          Length = 449

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 124/352 (35%), Gaps = 41/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A       +IA+TGS GKTTT  ++   L +  +T    G+    +   +         D
Sbjct: 105 ALSSFDGRLIAVTGSNGKTTTTSLIRDMLKASGQTVTTAGNIGTPVSEVVGPLT---SQD 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +      ++P IA+IT I   HL          +AK +I +      
Sbjct: 162 TLLLELSSFQLMGL----PDIKPDIALITNIFANHLDYHGDRAHYVAAKYQITKNQTANQ 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D +      AK+ A     +  F +  ++D               ++ ++G+ +
Sbjct: 218 KLILNADGADTPDFAAKTQA----QVVLFSRDNSSDMAWTDGH--------DLIIEGEHV 265

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +     +G H  +N+L  + +  I     +     L VF        R +  L +   
Sbjct: 266 MPLTAIKLVGPHNLENILAAITVSKIAGVTNEAIKSVLEVFGGVP---HRLQYLLTENGV 322

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SL 398
              ++S   +  + + A+    + +          L    + G+       DL  ++ +L
Sbjct: 323 RYYNDSKATDIEATQTALDSFHEPT--------IWLAGGLDRGD-------DLTRLIPNL 367

Query: 399 YNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  V   G      +  A      V    ++        SS   GDVV++
Sbjct: 368 SHVKLVIAFGETQQKVVAIARQAHKPVITVTSVKEAVPVAISSSSAGDVVLL 419


>gi|146319374|ref|YP_001199086.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis 05ZYH33]
 gi|146321579|ref|YP_001201290.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis 98HAH33]
 gi|253752401|ref|YP_003025542.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis SC84]
 gi|253754227|ref|YP_003027368.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis P1/7]
 gi|253756161|ref|YP_003029301.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis BM407]
 gi|166224741|sp|A4W3F1|MURC_STRS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224743|sp|A4VX47|MURC_STRSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145690180|gb|ABP90686.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus suis 05ZYH33]
 gi|145692385|gb|ABP92890.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus suis 98HAH33]
 gi|251816690|emb|CAZ52331.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis SC84]
 gi|251818625|emb|CAZ56459.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis BM407]
 gi|251820473|emb|CAR47201.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis P1/7]
 gi|292559004|gb|ADE32005.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis GZ1]
 gi|319758806|gb|ADV70748.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis JS14]
          Length = 443

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 38/294 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T + + G+ GKT+T  +L   + +I  T   IG             R  
Sbjct: 93  HEFLGEFMKGFTSLGVAGAHGKTSTTGLLAHVMRNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ +E++ +A  +  + +
Sbjct: 144 ANAQYFVFE-----SDEYERHFAPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +    +F+  +D     + A +       IY +G   N DF     K  +  S  +V+  
Sbjct: 199 KN--ALFVFGEDEQLRRITANA------PIYYYGLEDNNDFVAYDLKPSTSGSQFKVRHG 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + + E      G H   N    +  + I   D+    + L  F   +   +R+   +  
Sbjct: 251 EEELGEFQIPTFGKHNVMNATAVIANLYIAGFDLQLVAEHLKTFGGVK---RRFTEKIVN 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
              T+I + +  +P  + A I    Q            PH   R IA+L +  +
Sbjct: 308 D--TVIIDDFAHHPTEIIATIDAARQKYPSKELVAIFQPHTFTRTIALLDEFAD 359


>gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
 gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
          Length = 833

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 139/388 (35%), Gaps = 52/388 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L  +   I +TGS GKTT   ++T+ L    KT +  IG  N       + 
Sbjct: 121 IHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIGGLNGEGINGSS- 179

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  +    P  +VIT I   HLSNF G  E   A  + 
Sbjct: 180 -----GSEYFVAEADESD-GSIRNYS----PEFSVITNIDDEHLSNFGGDRERLLASLQD 229

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F    +    + N D S                 ++FG + + D  +  ++Q   +S+  
Sbjct: 230 FSTKTRQ-ICWYNGDCSRLR---------SCLVGHTFGFTSSCDLHILTYRQEGWRSFFT 279

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+ Q    E V    +G H   N    +G+   L  D DT   AL  F   + R +R   
Sbjct: 280 VRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQRFPGVQRRLQR--- 336

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCE-MGELS 385
             N     L  E Y  +P+ +   +  +         RR+           + E MG   
Sbjct: 337 -KNSSEVFLFLEDYAHHPSEIACTLQAVRSA---VGSRRVLAICQPHRFSRLKECMGCFP 392

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVH--YSETMDGLFLFIQ 438
            +F     +      ++ V+ +G          L  ++ R   V   Y      L  F++
Sbjct: 393 SAF-----KGADEVLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVP-FSELQGFLE 446

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +   DV V   +       L   L +
Sbjct: 447 KHIRVHDVCVALGAGDI--EVLGESLRD 472


>gi|325841180|ref|ZP_08167305.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sp. HGF1]
 gi|325490037|gb|EGC92383.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sp. HGF1]
          Length = 437

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 136/389 (34%), Gaps = 43/389 (11%)

Query: 76  ASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            +     + V          +        L S  T IAI G+ GKTTT  +L   L    
Sbjct: 69  NAFKDDHVEVIQAKQAGAKCVRYHDFLGDLASNFTSIAIAGTHGKTTTTGLLAHVLRLNY 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T   IG             +   +  F +FE        + +     RP  A+IT I  
Sbjct: 129 PTSYLIGDG---------TGKGVENSRFFVFEACEYQRHFLAY-----RPDYAIITNIEH 174

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F+ I+++  A   +F    K   +    DD   + L+  ++      + ++G   
Sbjct: 175 DHPDYFTDIDDVLDAF-NVFSNQTKK-MVIACGDDPEVKKLQTSTN------MMTYGLES 226

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + +   +   + +E +  +V + G+          G HM  N L  + +  +   +    
Sbjct: 227 HNNVVAKNILKTAEGTAFDVFINGEFYHTFNTLFFGDHMVLNSLAVITVCYLEGLEASII 286

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L +F   +      R A  +    +I + Y  +P  + A +  + Q  P  +   +A
Sbjct: 287 DKDLRLFEGVK-----RRFAQKKHHTQIIIDDYAHHPTEIAATLKAVRQKFPDRD--LVA 339

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----HVHYSE 428
           V          + +F  + A+ L+L    H++L+     A + +   SI       H++ 
Sbjct: 340 VF--QPHTFTRTAAFIDEFAQSLNL--ADHIYLTDIFGSARESSGSVSIQTLIDKCHHAN 395

Query: 429 TMD-GLFLFIQSSLVDGDVVVVKSSNSCG 456
            ++      +Q       VVV   +    
Sbjct: 396 LIEKETVEQLQQH--QDSVVVFMGAGDIK 422


>gi|241895692|ref|ZP_04782988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871059|gb|EER74810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
          Length = 444

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 125/353 (35%), Gaps = 35/353 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A+   +   IA+TGS GKTTT EM+   L +       + + N    V     +M  D
Sbjct: 95  ALAQKYIQENWIAVTGSNGKTTTTEMIASVLRTQTGDGHVLVAGNIGTPVSEVAPKMLKD 154

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  +       +PHIAV+T I  +HL+     E   +AK  I +    
Sbjct: 155 -DVLVTELSSFQLTGM----PAPKPHIAVLTNIFASHLNFHGTRENYVAAKMNITKHQTA 209

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQ 277
                +NYD+  +  L  +++A    TI  F +     A   L+      ++ ++     
Sbjct: 210 ADFFVVNYDNEEWRHLAEQTNA----TIVPFSRKGVSEAGAYLKNGSLYYKEEFI----- 260

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H  +N L  + +  ++  +      AL  F   E    R +   N  
Sbjct: 261 --IAADELGVPGTHNIENALAAIAVGKLMRVETTNIAGALRSFSGVE---HRLQFIGNFY 315

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + ++S   +  + + A+S  +          + +L    + G+              
Sbjct: 316 DRPVYNDSKATDIEATEMALSGFNV--------PVILLAGGLDRGDDQMRL-----LSAM 362

Query: 398 LYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  + + G     L     +  I V Y++               G+V+++
Sbjct: 363 KQHVKGLIVFGETAEKLAAVGKKIGIPVLYAKDAPSAVKPAFELSEAGEVILL 415


>gi|242238098|ref|YP_002986279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya
           dadantii Ech703]
 gi|242130155|gb|ACS84457.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech703]
          Length = 437

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 129/349 (36%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          LA +  +    
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWAVGVGGNIGLP-----ALALLKQESQLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E       
Sbjct: 155 VLELSSFQL----ETTRSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYEH---ANV 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 208 CIVNADDALTMPIRG-----ADPRCLSFGVD------VGDYHLNRQQGEVWLRVKGERVL 256

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +A+ AL+ F    G   R++  ++     
Sbjct: 257 NTREIKLTGQHNYTNALAALALADAVGIPRASALTALTTFT---GLPHRFQLVMDGKGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S   H    + +    
Sbjct: 314 WVNDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLQHYLQGDRI---- 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 365 --RLYCFGRDGAQLAALRPE--IADQTETMEQAMRLIAGRVRSGDMVLL 409


>gi|57505613|ref|ZP_00371540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
 gi|57016160|gb|EAL52947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
          Length = 428

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 137/449 (30%), Gaps = 88/449 (19%)

Query: 30  ISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           I+ +S        F    +        F   AV+KGA                   +  V
Sbjct: 10  ITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGA------------------KIIDV 46

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YN 144
           ++    L        +     II ITG+ GKTTT   +   L  +       G+     N
Sbjct: 47  EETKKLLG-------IDKTIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFIN 99

Query: 145 NHIGVPLTLARMP-------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +      +L   P                +F + E+    L  ++     +     + T 
Sbjct: 100 DEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHAL--VQNRIEGLEFAAKIFTN 157

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL      E    AK   F         F+N D        A      +K  Y++G
Sbjct: 158 LTQDHLDFHGSFENYKEAKESFF---TDESLKFINKD--------AFHINFNVKNAYTYG 206

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-V 310
               A +Q++ +   +E   + V  + +S  +    +G     N+L     V+ L    +
Sbjct: 207 IENPAFYQVKAYALENEIDAL-VLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVKPNL 265

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +A+S F    GR ++            +   +   P  ++  +  L          
Sbjct: 266 ADLERAISGFGGVCGRVEKI--------VEGVIVDFAHTPDGIEKVLDSLK------NKN 311

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY---- 426
            I V G     G+  +S    + ++++ Y  + +  S         ++ + I   +    
Sbjct: 312 LIVVFGA---GGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKN 368

Query: 427 ----SETMDGLFLFIQSSLVDGDVVVVKS 451
                E  +           + D+V++  
Sbjct: 369 TPLMIENRELAIYKALELKKEDDLVIILG 397


>gi|254510884|ref|ZP_05122951.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534595|gb|EEE37583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
          Length = 469

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 120/386 (31%), Gaps = 37/386 (9%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V   +VA+     +PV     +              +   +IA+TGS GK+TT  ++   
Sbjct: 87  VPNPVVAAALEAGVPVDNDIGLFFRSFAGPEWHNYDTPPRVIAVTGSNGKSTTAALIHHI 146

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+   ++    G+    +           D    + EL          L   + P +AV 
Sbjct: 147 LTEAGRSAQLAGNIGRGVLDIDP----GGDGSVVVLELSSYQ----TELARALTPDVAVF 198

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIY 248
           T ++P HL    G+    +AK  +F          +  D++    L  + +       + 
Sbjct: 199 TNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD-RAVIGIDEAEGAFLAGQLAEGPSDDRVI 257

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIV 303
               ++        W+  + + ++    +G+      +  +    G H  QN        
Sbjct: 258 RVSVARK--LTGPGWQVFARKGFLSEYRKGRQAGAIDLRDIRGLPGAHNHQNACAAYAAC 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L         A    H   G   R +     G  T +++S   N  S   A++   +I
Sbjct: 316 RALGLAPRVIEDA---LHNFPGLPHRSQIIAEAGGVTYVNDSKATNVDSALKALNAFGKI 372

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G          E G  + +   D        ++   ++ G        A+     
Sbjct: 373 RWICGGLE-------KEGGLDALNGARD--------HVVKAYVIGREAAGF--AMQLEAE 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
                TM        +    G+VV++
Sbjct: 416 AQVCTTMSAAVEQAMADAQPGEVVLL 441


>gi|309388994|gb|ADO76874.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium praevalens DSM
           2228]
          Length = 455

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 134/400 (33%), Gaps = 38/400 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   + +     I +    ++L  L K             IA+ G+ GKTT   M
Sbjct: 72  SAIPTNNPELKAARKKGIKIVKRAEMLAYLMK---------DKKTIAVAGTHGKTTVTAM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L       KK  A +        V   L  +  ++  G  E  ++   E         P 
Sbjct: 123 LAAIFKEAKKDPAVM--------VGGYLKELKGNIADGEGEYFITEADESDGSFLYFEPD 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++  +   H   +  + E  +         +K   +  N DD     L A       K
Sbjct: 175 ILLLNNLELDHPDFYKNLAEFMNIFERFANKNDKEAFLLYNKDDQNLNNLFA-----SRK 229

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVS 304
              SF  ++ A+F  +  +  + +S  E+    +  +++     G +   N L    +  
Sbjct: 230 KSSSFSLNQ-ANFSAKNIQYNNFESSFELYYLDQFVIKIELSVPGEYNLYNALAAAAVSL 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI- 363
            L  D+     AL  F    GR   ++  L +G   L+D+ Y  +P  +K  +  +  + 
Sbjct: 289 KLNIDLTALKSALKKFSGV-GRRFDFKGKLLEGKVDLVDD-YAHHPTEVKELLKTVKNMN 346

Query: 364 --------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R    L D       +   ++      S  N   + L+ F     K
Sbjct: 347 YSNIRVVFQPHRYSRTKRFLNDFSYSFLNANQVYLTDIFSASEQNKYKISLNDFAAEISK 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           ++    +  HY    + +   +   +  GD+++   + + 
Sbjct: 407 NS---QVDCHYYSDFNEIKNKLLKEVKPGDIILTVGAGNI 443


>gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase
           [Lactobacillus crispatus ST1]
 gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus ST1]
          Length = 523

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 149/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
             I+P H+         +    K ++   L  +    +N + + F+ +  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQL---LVNSRKCIINAETAHFDEVYAAATTTTNPDS 265

Query: 247 IYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +         +  DF+    +   +++   +              +     +G  
Sbjct: 266 IYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K           G+       +    ++D  Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKG---IRDVTIPGRMQTERTKKHGMVVVD--YAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A +  +   +   + + I ++G     G+   S     +E L+ Y     +L     
Sbjct: 381 SMMALMRFMR--NEFNDPKIIVIVGAP---GDKGVSRRPGFSESLTAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
           G     ++ + +   I     +       +       +     DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVVLICGKGA 487


>gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 358

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 111/360 (30%), Gaps = 44/360 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
               A+ G++G     +++       K T          I   L+  +     DF   E+
Sbjct: 2   GHRAAVMGTIGNGLFGQIVEA-----KNTTGSA----VEIQSSLSTFK-HAGADFTSIEV 51

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L + R     +    A+ T +   HL     +E  A+AK  +F  L+ T    +N 
Sbjct: 52  SSHGLAQHR--VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINA 108

Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQG 278
           DD    + L     A+ +        S NADF        +        + + +  +   
Sbjct: 109 DDEIGYQWLTELPDAIAV--------SMNADFKVGSHQWMKAINIHYHFKGADITFESSW 160

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +    IG     N+L+ +  +      ++  +          G   R         
Sbjct: 161 GNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYG---RMEMIQYPNK 217

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+I + Y   P +++ A+    +   H +G    + G   +     +     +AE  + 
Sbjct: 218 PTVIVD-YAHTPDALEKALIAARE---HCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAE 273

Query: 399 YNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             I           +     +         V           F   S V+ DV+++  K 
Sbjct: 274 TIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKG 333


>gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 483

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 160/479 (33%), Gaps = 67/479 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +      +   + +S DSR       FFA KG ++   +++       A
Sbjct: 16  NFREISSA-GEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFKK-EYLTDLE---A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+           ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAANFYEFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVP------------LTLARMPV-----DVDFGIF 165
                 L  +     A + +    +               L L  M        +   + 
Sbjct: 125 YFAKAILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           E+            + +   + V   I+P H+       +E+    K ++   L+ +   
Sbjct: 185 EVSSQAYK--TERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQL---LKNSRYF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K + +   I   +    S+N   + +     ++ S         S E 
Sbjct: 240 VANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHFVTDGSV--------SGEF 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G    +N L T      L A  +   + L+        G+        G    ID
Sbjct: 292 DIRLLGRFNQENALATALATKALGASFENIRQGLASA---IVPGRMELLTAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S++  + V   +  H  G+   VLG     G   +S   D  +V+  +   +
Sbjct: 349 --YAHNGLSLENLVEV---VEDHHAGQLFLVLGS---TGNKGESRRKDFGQVIENHPRLN 400

Query: 404 VWLSG-----FHVLALKDALPR--SIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KSS 452
           V L+       +   + D +    S  + +    +  +   I  +    D V++  K +
Sbjct: 401 VILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGA 459


>gi|222823156|ref|YP_002574729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
 gi|222538377|gb|ACM63478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
          Length = 427

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 117/390 (30%), Gaps = 75/390 (19%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  +S+       F  +K    +   F   A++K A ++                     
Sbjct: 10  ICDNSKECEKDCFF--LKTSQNE--KFTHQALEKQAKII--------------------- 44

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNN 145
               ++ +      +     II ITG+ GKTTT   +   L  +    A +G+     N+
Sbjct: 45  ----SIAECKSLLNIDENIKIIGITGTNGKTTTAGAIYSILLDLGYKCALMGTRGSFIND 100

Query: 146 HIGVPLTLARMP-------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
               P  L   P                +F I E+    L  ++     +     + T +
Sbjct: 101 KNITPKGLTTAPILQTLEILSLASEQKCEFLIMEVSSHAL--VQNRIEGLEFKAKIFTNL 158

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL      E    AK   F         F+N D        A + A  +K  +S+G 
Sbjct: 159 TQDHLDFHGSFENYKQAKESFF---TDECMKFINKD--------ASAIAFNVKNSFSYGI 207

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VD 311
              + + ++ +          V     +  +    +G     N+L     V+ L    + 
Sbjct: 208 ENPSYYHIKAYAL-KNGIEAVVNFGKNNFTIESSLVGLFNLYNLLAASACVNELVRPNLK 266

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              KA+S F   EGR +             +   +   P  ++  +  L           
Sbjct: 267 ELEKAISNFGGIEGRMQVV--------AKDVIVDFAHTPDGIEKVLDALK------YKNL 312

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I V G      +  +     +A+  +   I
Sbjct: 313 IVVFGAGGNRDKTKRPLMAKIAKYYAKKLI 342


>gi|332881752|ref|ZP_08449400.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680391|gb|EGJ53340.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 458

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 134/386 (34%), Gaps = 43/386 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      + + G+ GKTTT  M    L        A +G    + G    L+ 
Sbjct: 101 RAQVLGTLTRAHKGLCVAGTHGKTTTSSMAAHILHQSHVDCNAFLGGITKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E       E     H + P+ +VIT   P HL  +   E    +  +   
Sbjct: 160 --PKSDYVVIEA-----DEFDRSFHWLTPYASVITATDPDHLDIYGTKEAYLESFRKYTS 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-V 274
            +   G + L       E L+ +       T YS+ +    DF     +    + + + +
Sbjct: 213 LIRPGGFLVL------HEGLEMQPDVQEGVTTYSYSRGHG-DFHAENIRIGDGEIYFDFI 265

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              G   +V          +N +  + +  I     +   + ++ F   +   +R+   L
Sbjct: 266 SPLGHIKDVQLGVPVSINIENGIAAMALAQISGVTPEEIKRGMASFRGVD---RRFDFRL 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +PA ++ ++  + ++     G++IA +     +   ++ F+ + AE
Sbjct: 323 KDDKAVFLTD-YAHHPAEIRQSVISIREL---YRGKKIAAIFQ-PHLYTRTRDFYKEFAE 377

Query: 395 VLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LSL         Y      + G     + D L  ++        + +   ++ S  D D
Sbjct: 378 SLSLLDEVILTDIYPARETPIPGVTSRLIYDRLAPTVKKCLCR-KEDVPEIVRQS--DAD 434

Query: 446 VVVVKSSNSCGFY----RLINLLLEE 467
           V ++  +          ++  +L E 
Sbjct: 435 VFILLGAGD--LESYAPQITEILKER 458


>gi|323139874|ref|ZP_08074902.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
 gi|322394870|gb|EFX97443.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
          Length = 1270

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 43/376 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++    A L     +I + GS GKTTT  ML   L     +                 A 
Sbjct: 76  SRAGALADLLDGRDVIGVAGSHGKTTTAAMLAAILEHAGFSPG-------FTIGAAAPAL 128

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             V+  +    L ++   E       VRP   ++T +   H  ++ G + + +A A + E
Sbjct: 129 GDVNARWSEGSLFVAESCEAFRALDHVRPAHCLVTNVDDEHSEHYGGRDRLEAAFAAMIE 188

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                G I L  DD F   +  K  +  +    ++G    + ++  + ++  +    +  
Sbjct: 189 RTRSDGHIVLCGDDPFLAAMAEKPGSRAV----TYGFGDKSSWRADRIERGRDAVAFDAI 244

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G+ +  +     G H A N L  L + + L A  D A  AL  F P   R +R     
Sbjct: 245 AWGRPLGRIRLKAPGAHNAANALGALALANALGAPFDAAALALERFIPVGRRWERV---- 300

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +     I + +  +P  + A ++     S    G+ +A++             H  +  
Sbjct: 301 GEADGVRIFDDFAHHPTEIAATLAAARD-SAEAGGKVVAIV---------EPLSHARICR 350

Query: 395 VLSLYN-----ISHVWL-----SGFHVLA------LKDALPR-SIHVHYSETMDGLFLFI 437
           + + Y        +  +     +G    A      L D   R  +              +
Sbjct: 351 LATHYARALSMADYTIVLPVDGAGEPTPADSSDALLHDVFRRSGLRFACCNGPTDAASTV 410

Query: 438 QSSLVDGDVVVVKSSN 453
            +    GDVVV   + 
Sbjct: 411 AALAGPGDVVVTMGAG 426


>gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum MopnTet14]
          Length = 802

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 147/431 (34%), Gaps = 64/431 (14%)

Query: 47  KGPHYDGHDFILHAV-----QKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVL 92
           +G    G D +   +      KGA   + N +     G++ +         P F      
Sbjct: 26  RGYRVSGSDLLEGEIVLTLKNKGAKFFLGNREEHIPEGAVVVYGSGISQENPEFLSAKNR 85

Query: 93  GA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGV 149
           G   +++  + A L      I +TGS GKTT   ++T  L  +  T +  IG  N     
Sbjct: 86  GHRLIHRAELLAELAKDQISIFVTGSHGKTTVSSLITAILQKLGTTPSFAIGGLNEDGIN 145

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             +        ++ + E   S      +L     P  +VIT I   HLSNF G      A
Sbjct: 146 GSS------GFEYFVAEADESDGSIQHYL-----PEFSVITNIDDEHLSNFGGDRGALLA 194

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             + F    +    + N D S                  +FG S + D  +  ++Q   +
Sbjct: 195 SLQDFAFRTRRSC-WYNGDCSLLR---------SSLKGNTFGFSSSCDLHILSYRQEEWR 244

Query: 270 SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   Q +G   E V     G H   N    +GI   L  D  T   AL  F   + R +
Sbjct: 245 VFFTAQYRGILYEDVEVQLAGEHNVMNAAAAMGIALSLGIDELTIRDALREFSGVQRRLQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEM----G 382
           R   +       L  E Y  +P+ +   +  +   +  G+ R +A+        +    G
Sbjct: 305 RKNVSE----TFLFLEDYAHHPSEISCTLQAVR--AAVGQRRVLAICQPHRFSRLKECWG 358

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRS--IHVHYSETMDGLFL 435
               +F     +      ++ V+ +G    A     L  ++ R   +   Y      L  
Sbjct: 359 RFPSAF-----KYADEVFLTEVYGAGEREEAVPYQELAQSISRESLVKCTYVP-FQELKR 412

Query: 436 FIQSSLVDGDV 446
           F++  +   DV
Sbjct: 413 FLEQRIRVHDV 423


>gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei ATCC 334]
 gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC
           334]
          Length = 517

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 158/488 (32%), Gaps = 75/488 (15%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +I       + GI+ DSR ++    FF  KG  +    ++  A   GA   V     V  
Sbjct: 22  AIQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF-RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  + 
Sbjct: 80  NG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEARP 136

Query: 136 TYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHL-------GEIR 176
            +  + S  + +  P    R            +  D+   + E GM+HL         +R
Sbjct: 137 RHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYLR 195

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   +     I P H+              K ++     K   + +N +   F+ 
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK---VVINAETEHFDQ 252

Query: 235 L-KAKSHALGIKTIYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSM- 281
           +  A +     ++IY F    +A F+ ++            +    +S   +    +   
Sbjct: 253 VYAAATTTTYPESIYLF---ASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAA 309

Query: 282 ------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       IG     N    +    +   D   A+  ++     +  G+     + 
Sbjct: 310 ALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAK---VKIPGRMEHTKVA 366

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +D  Y  N ASMKA +S L     + + R + V+G     G+   S     A+V
Sbjct: 367 GHGAVYVD--YAHNYASMKALLSFLKH--AYKDPRLLVVVGSP---GDKGVSRRPGFAKV 419

Query: 396 LSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDV 446
           L+ +       +          + + +   I      VH             S     D+
Sbjct: 420 LTEFATEAFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDI 479

Query: 447 VVV--KSS 452
           VVV  K +
Sbjct: 480 VVVAGKGA 487


>gi|213962172|ref|ZP_03390436.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga sputigena
           Capno]
 gi|213955178|gb|EEB66496.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga sputigena
           Capno]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 133/381 (34%), Gaps = 48/381 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +      +A+ G+ GKTTT  +L   +       A + ++   I        +
Sbjct: 101 RSEVLGFITKNTFCLAVAGTHGKTTTSSILAHIMVESG---ASVSAFLGGIAENFNSNLV 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               ++ + E        +R     + P+IA IT++   HL  +   + +     E    
Sbjct: 158 LKGSEYTVVEADEFDRSFLR-----LSPNIACITSMDADHLDIYGDEQHLIEGFHEFAGK 212

Query: 217 LEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           ++  G++ + N  +   E               ++G   N+D+  +           + +
Sbjct: 213 IKPGGSLIVRNGLNIAGE---------------TYGLEDNSDYSFQNIHIVDGIYHFDFK 257

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G   + +     G H   N L  + +        +  +  L+ F   +   +R+   +
Sbjct: 258 YAGGIYKDITFMKPGRHNLLNALAAIAMAVKAGIAPEKLLPHLATFKGVK---RRFSYII 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F  ID+ Y  +P+ + A    ++++ P+    +  V      +   ++ F  D A+
Sbjct: 315 KEKDFVFIDD-YAHHPSEINALYQAVAEMYPNTP--KTIVF--QPHLFTRTRDFMDDFAK 369

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y    + + G     L + +        ++T + + L ++       
Sbjct: 370 SLSQFDEVILLDIYPARELPIEGITSQVLLEKITTPKKTLVNKT-ELIPLLLKKHPQ--- 425

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           +++   +   G    +  + E
Sbjct: 426 LLLAVGAGDIGAE--VAHIKE 444


>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 125/346 (36%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 REAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-----ALDLLADDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   +
Sbjct: 160 VLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L A S        +SFG +K  DF+     +   Q W+  Q        
Sbjct: 213 VVNRADALTRPLIADS-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFDKLLPVG 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + AL  F     R +  R    +   +  D
Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWVR---ERQGVSYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G         +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++ +    T+D           +GD V++
Sbjct: 375 VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLL 420


>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAO1]
 gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PA7]
 gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAb1]
 gi|30316126|sp|Q9HVZ9|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PA7]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 REAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-----ALDLLADDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   +
Sbjct: 160 VLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q        
Sbjct: 213 VVNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFDKLLPVG 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + AL  F     R +  R    +   +  D
Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWVR---ERQGVSYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G         +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++ +    T+D           +GD V++
Sbjct: 375 VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLL 420


>gi|330718670|ref|ZP_08313270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           fallax KCTC 3537]
          Length = 414

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 139/414 (33%), Gaps = 49/414 (11%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
                F      ++D  D +  + Q       +N        +  + +  + +V  AL+ 
Sbjct: 18  KNGVVFI-----NHDAADIVDDSFQYIVKNPGINYQHPIIKQAEKLNIPIITEVTVALS- 71

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    K  +I +TGS GKTTT  ++   L +  ++    G+    +     +A   
Sbjct: 72  -------TFKGRLIGVTGSNGKTTTVSLIRDMLQADGQSVVTAGNIGTPV---CEVAGQL 121

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D  + EL    L      T  ++P IA +T I  +HL+     E    AK +I +  
Sbjct: 122 RKDDTLLLELSSFQLLG----TPDIQPDIAAVTNIFASHLNYHGSRENYVKAKFQITKHQ 177

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
             T  + LN D +  +     + A     +  F + ++  +           + + + L 
Sbjct: 178 LATQHLVLNADIADSQRFAQDTQAA----VTMFSRQQSGYYAGADQDNLLVDNQIVMPLD 233

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                     +G H  +N+L  + +  +    +++  + LS F   +    R     +  
Sbjct: 234 N------IKLVGPHNLENILAAVSVAKLAGVKIESMRQVLSQFGGVKY---RLEFVFSHN 284

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                D+S   +  + + A++     +          L    + G+       +L     
Sbjct: 285 GIKFYDDSKATDIEATQQALNSFDVPT--------VWLAGGLDRGDDLTRMKDNL----- 331

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  V   G     +      +   ++  +E +        +    GDVV++
Sbjct: 332 -KHVKSVIAFGETADKVVSLAKIAGIQNITVTENVMTAAPIAIAQAKAGDVVLL 384


>gi|238754433|ref|ZP_04615788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
 gi|238707262|gb|EEP99624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
          Length = 438

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 130/376 (34%), Gaps = 54/376 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 101 RENQAPIIAITGSNGKSTVTMLVGEMAKAAGWQVGVGGNIGVP-----ALTLLKQENQLV 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H   +  G+++  +AK  I++  +    
Sbjct: 156 VLELSSFQL----ETTSSLQATAATILNVTEDHTDRYPFGLQQYRAAKLRIYDNAK---I 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + +++ G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVSGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KA        G   R++         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAAGIPRSSSLKA---LTTYAGLAHRFQLVFENHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L     H +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGL-----HIDGTLHLLLGGDGKSADFS-----GLTRFLQGDK 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  V+  G     L    P    +  ++TM+     +  +L  GD+V++    +S     
Sbjct: 365 V-QVYCFGRDGEQLAQLRPEVSQL--TDTMEQAVKLLAPTLKAGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGTEFARLAEEL 437


>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 298

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 21/238 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S
Sbjct: 16  DAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDAS 75

Query: 81  LS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +PV  + ++   L+KL      +  +   ++ +TG+ GKTTT ++L      + 
Sbjct: 76  MVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWAKMLG 135

Query: 135 KTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T A +G+  N +   +               L R  VD       + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +    AV T ++  HL     +    +AK  +F   +      +N DD        +
Sbjct: 196 ALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHK-IINADDEVGRRWLGQ 252


>gi|300774447|ref|ZP_07084310.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
 gi|300506262|gb|EFK37397.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 112/313 (35%), Gaps = 31/313 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  V   +      IAI G+ GKTTT  ++          ++C   +   I       
Sbjct: 98  LKRAKVLGLITENTDCIAIAGTHGKTTTSTLVAHLCKEADLPFSC---FLGGISENFKSN 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +     + + E       E       + P  AV+T+    HL  +     I     +  
Sbjct: 155 FLYNGSMYSVVEA-----DEYDRSFLNLSPDWAVVTSTDADHLDIYGDKSHIEEGFRQFA 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             + +   +F+            K   +G     ++  ++ AD+     +   ++ + + 
Sbjct: 210 ALVPQDKQLFI-----------RKGLEIGRGH-QTYAVNEPADYYSDNLRMDHDKIYFDF 257

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               +++ + V    G H  +N    L I+  L AD DT  KA+S F   +G  +RY   
Sbjct: 258 HTPTETVKDFVWEIPGIHNVENATAALAILHNLGADFDTLKKAISNF---KGIKRRYTKH 314

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Q     ID+ Y  +P  + A +S +    P     +  ++     +   ++ F    A
Sbjct: 315 IYQNGKIYIDD-YAHHPTEINAVMSSIRTFYPD----KKLLVAFQPHLFSRTRDFADGFA 369

Query: 394 EVLSLYNISHVWL 406
           E LS      + L
Sbjct: 370 ESLSK--ADELIL 380


>gi|168206854|ref|ZP_02632859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
 gi|170661761|gb|EDT14444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
          Length = 458

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 122/350 (34%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----VEIDVAIVTNITPNHLDMHKDMQEYIYAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++   + L  ++    ++  +S  K+K  D   +  K         + + GK +    +
Sbjct: 228 DENEITKNLDKEAKGKVVR--FSSKKTKGEDAYYKDGK---------LYVHGKEVCKKDN 276

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            I  G H  +N L    +       +++  K    F    G   R             ++
Sbjct: 277 IIIKGMHNVENYLAAF-LAVYDEVSIESMKKVAETFG---GVHHRCEFIREVDGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  + P    A +    +         I + G   +        +           I  +
Sbjct: 333 SIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIKAI 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     +K A  R        + V+  E+++ +    +S   +GD++
Sbjct: 380 VLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDII 429


>gi|320157546|ref|YP_004189925.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus MO6-24/O]
 gi|319932859|gb|ADV87723.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus MO6-24/O]
          Length = 453

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 141/407 (34%), Gaps = 33/407 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     + ++       
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQDGALADVLSRG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +    D + +  K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 234 -CWSDQEFSGQDGEWQAVKLSKDGSHFEVWLQGEQVGTVQWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R           + D+ +  +P +++  ++ L   +
Sbjct: 293 HVGVTADLACEALGRFINTK---RRLELKGEINGVAVYDD-FAHHPTAIELTLAGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSI 422
             G+ + IAVL        + +  H +     SL     V+L     +A  ++D   +  
Sbjct: 347 KVGDKKIIAVLE--PRSATMKRGVHKETL-AASLKQADEVFLYQPESIAWSVQDVAAQCQ 403

Query: 423 HVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLL 464
              + S+ +D     I      G  ++V  SN  GF     +L+  L
Sbjct: 404 QPAFTSDNIDQFVANIAQRAEAGTQILVM-SNG-GFEGIHGKLLTAL 448


>gi|260752700|ref|YP_003225593.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552063|gb|ACV75009.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 441

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 130/422 (30%), Gaps = 66/422 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F + A     G+ +    + A      IP+ G  D+           R      ++ ITG
Sbjct: 72  FGISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRCCPVVGITG 129

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   L               +IG+PL  A    D    + EL    +   
Sbjct: 130 TNGKSTTTALIHHILKEAG----LPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID-- 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++
Sbjct: 184 --LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVI 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +S A  +                       + +W  +Q             G H AQN
Sbjct: 242 AKQSAAHLVA------------VHADNISAEDQVNWPNLQ-------------GPHNAQN 276

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            ++ + +  IL    D             G   R +    +     ID+S   N  +   
Sbjct: 277 TVLAMAVAHILGISDDVI---SKALISYAGLPHRMQKIGERRGVLFIDDSKATNAMATAP 333

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++    I          +LG + +  +L               +I   +  G       
Sbjct: 334 ALAAFPAIHW--------ILGGVPKTADLDPC-------KAFYNHIRQAYTIGQAGPDYA 378

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
             L    ++V    T++             +VV++    +S             F +++ 
Sbjct: 379 QLLREAGVNVVECGTLEKAVRLAAEEAQPDEVVMLTPACASFDQFSDYEARGQAFRKIVE 438

Query: 463 LL 464
            L
Sbjct: 439 AL 440


>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 455

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 116/347 (33%), Gaps = 32/347 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GKTTT E+L        +     G+            R   D D  + E
Sbjct: 110 DAHIIAITGSNGKTTTTELLGHLFRKAGRNTFVCGNVGRPFSD--DTDRTGPD-DLVVLE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L  I       RP ++++  I P HL      I+  A++K  I E      T   
Sbjct: 167 VSSFQLDHID----SFRPDVSILLNITPDHLDRYNQDIDRYAASKLRICENQTGVDTFIF 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EV 283
           N DD        K     I      G S   + +   + + S+   + +  Q +++    
Sbjct: 223 NQDDERIARFVRKRARGPIA----LGISITEEIRATGFLRNSDLM-LRINDQEENLMPTE 277

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L       +     D   ++L  F        R     +      I+
Sbjct: 278 KLALRGRHNVFNSLAAAVAARVAEVRSDVVRESLRSFEGVP---HRLEIVRDIDGVRYIN 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  ++  A+   ++         + + G     G    + +  L + L    +  
Sbjct: 335 DSKATNVNALWYALESFTE-------PVVLIAG-----GRDKGNDYSGL-KSLVQTRVRA 381

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G    A++  L   +     +E++D            GDVV++
Sbjct: 382 LITIGEAAEAIQAELGEFTADGVTTESLDEAVRLAHLLARPGDVVLL 428


>gi|84387794|ref|ZP_00990809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
 gi|84377309|gb|EAP94177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 144/405 (35%), Gaps = 29/405 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     +++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDNNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YAPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  +E I      +   +   G IF    D+  E + ++        
Sbjct: 181 LVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPSNGRIFSPKQDTAIEDVLSRGCWSE--- 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             +    +  D+  +  K   + S  EV  Q + +  V    +G H   N LM +     
Sbjct: 238 --TESSGELGDWDAK--KLVKDGSKFEVYFQDECVGTVDWDLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D   ++L+ F   +   +R          ++ D+ +  +P +++  +  L   + 
Sbjct: 294 VGVTPDLGCESLATFINTK---RRLEFKGEVAGVSVYDD-FAHHPTAIELTLGGLR--NK 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIH 423
               + IAVL        + +  H + LA+ L   + ++++       +++D A      
Sbjct: 348 VDTKKIIAVLE--PRSATMKRGVHKETLADSLKQADSTYLFQPDNIDWSVQDVADACHQP 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLL 464
            H S+ MD     I S    GD ++V  SN  GF     +L++ L
Sbjct: 406 AHVSDDMDAFVARIVSEAQAGDQILVM-SNG-GFGGIHQKLLDAL 448


>gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 436

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 142/442 (32%), Gaps = 67/442 (15%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           FFA KG  +   +++  A+ KG  L V   D       L IPV  V D+  A++   +A 
Sbjct: 6   FFA-KGATFKA-EYLKEAIAKGLPLYVSEVDY-----KLDIPVVLVTDIKKAMSLIAMAF 58

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---------- 150
               + +  ++  TG+ GKTT        L    K  A + + N  +             
Sbjct: 59  YDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYK-PALLSTMNTTLDGQTFFKSQLTTP 117

Query: 151 --LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFS 201
             L L  M  +         I E+        R   + +   + V   I+P H+      
Sbjct: 118 ESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGR--VYGLTFDVGVFLNISPDHIGPIEHP 175

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E+    K  + E    +  + +N     F  L  +               ++A +   
Sbjct: 176 TFEDYFYHKRLLMEN---SRAVVINSGMDHFPFLANQVAN-----------QEHAFYGAL 221

Query: 262 KWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              Q +       +  G+ +       IG+   +N +        L A +    K ++  
Sbjct: 222 SDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK- 280

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               GR +      +   F      Y  N  S++  +SV+ +   H  G  + +LG    
Sbjct: 281 TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE---HQTGNLVLILGAPGN 333

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMDGL 433
            GE  ++   D   V++ +    V L+           +   +   I   +      +  
Sbjct: 334 KGESRRA---DFGAVINQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQA 390

Query: 434 FLFIQSSLV-DGDVVVV--KSS 452
                S      D V++  K +
Sbjct: 391 IQKAMSLCQGPEDAVIIAGKGA 412


>gi|18311441|ref|NP_563375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens str. 13]
 gi|30316081|sp|Q8XHM4|MURD_CLOPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|18146125|dbj|BAB82165.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           perfringens str. 13]
          Length = 458

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 121/350 (34%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGRVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----VEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++   + L  ++    ++  +S  K++  D   +  K         + + GK +    +
Sbjct: 228 DENEITKNLDKEAKGKVVR--FSSKKTEGEDAYYKDGK---------LYVHGKEVCKKDN 276

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            I  G H  +N L    +       +++  K    F    G   R             ++
Sbjct: 277 IIIKGMHNVENYLAAF-LAVYDEVSIESMKKVAETFG---GVHHRCEFIREVDGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  + P    A +    +         I + G   +        +           I  +
Sbjct: 333 SIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIKAI 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     +K A  R        + V+  E+++ +    +S    GD++
Sbjct: 380 VLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAESGDII 429


>gi|261345182|ref|ZP_05972826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
 gi|282566874|gb|EFB72409.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
          Length = 447

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 132/373 (35%), Gaps = 34/373 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    +  V   +   P    F + E  
Sbjct: 93  VLAVAGTHGKTTTAGMLAWILEDCGYEPGFLIGGVPGNFDVSSKIGNSP----FFVIEAD 148

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +E I      +   +  +G I + 
Sbjct: 149 EYDCAFFDKRSKFVHYSPKTLILNNLEFDHADIFENLEAIQKQFHHLVRLVPASGKILMP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             D+  + +         + +      ++ ++Q    K   + S  EV  Q + + EV  
Sbjct: 209 DSDNNLKQVMNMGCWSEQELV-----GEHGEWQA--VKLNHDGSRFEVHYQQQKVGEVNW 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  QN LM +     +      A  AL  F       +R      +   ++ D+ 
Sbjct: 262 SQVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINAR---RRLELRGVENDVSVYDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R IAVL    E    +    I+  ++         V
Sbjct: 318 FAHHPTAILATLEALRS-KVGGTARIIAVL----EPRSNTMKMGINKNDIAPALGRADEV 372

Query: 405 WLSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---- 457
           +L    ++  +   +        H+   +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLFQPTNIPWMVTEIAEHCVQPAHWHADVDTLANMVIETAQPGDHILVM-SNG-GFGGIH 430

Query: 458 YRLINLLLEEFPA 470
            +L++ L ++  A
Sbjct: 431 EKLLDGLKKKAQA 443


>gi|320161741|ref|YP_004174966.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319995595|dbj|BAJ64366.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 461

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 148/409 (36%), Gaps = 35/409 (8%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI HA    +G  +V         +  +        +  L +         K  +IA+ G
Sbjct: 50  FIGHAAGNISGATMVVRSSAIPEDNPEV-QAARQAGIPVLKRAEFLETFLKKYRVIAVAG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GKTTT  M+   LSS+ +        N    +   +  +  +   G  +L +    E 
Sbjct: 109 THGKTTTTGMIAWMLSSLAQ--------NPSYIIGGVVRDLHTNAHAGKSDLFVIEADEY 160

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             +   + PHIAVIT +   H   F  + + + A  +    ++  G + +N D      L
Sbjct: 161 DRMFLGLHPHIAVITYLEHDHPDCFPTMADYSGAFEDFIRQIQAGGILLVNGDHPPTRAL 220

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEV--QLQGKSMEVVHHG----I 288
              +       + ++G+S++  + L+         +  +V  Q+       + H      
Sbjct: 221 GQAT--PKGVKVMTYGESEHNTYFLKHASVNRWGGFSADVWKQMPDGENRRLLHLALQVP 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  L +   L   +  A +AL +FH   G G+R+         TLID+ Y  
Sbjct: 279 GKHNLLNALAALAVADQLGLMLSPAAEALHLFH---GTGRRFEVRGEANGVTLIDD-YAH 334

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +P  ++  ++      P       AV          +Q+   +  +     +   V    
Sbjct: 335 HPTEIRTTLAAARARYPE--RHIWAVW--QPHTYSRTQALMEEFCQSFEDADAVVVLEIY 390

Query: 408 -------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  GF    + + +     V +  T++    ++ + L  GDVV+V
Sbjct: 391 AAREKNPGFSAREVVNRMKHPAAV-FQPTLETAQEYLLNCLQPGDVVLV 438


>gi|332160410|ref|YP_004296987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607129|emb|CBY28627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664640|gb|ADZ41284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859323|emb|CBX69670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica W22703]
          Length = 444

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 132/350 (37%), Gaps = 38/350 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDF 162
             ++A ++AITGS GK+T   ++     +        G+     + +   L+    +   
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALNLLKQLSLQKHENQL 160

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
            + EL    L      T  +R   A I  +   H   +  G+++  +AK  I+E      
Sbjct: 161 VVLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRIYEN---AK 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    ++            SFG        +  +    +Q  + ++++G+ +
Sbjct: 214 VCVVNADDALTMPVRG-----ADNRCISFGVD------VGDYHLNKQQGEIWLRVRGEKV 262

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++KAL+ F    G   R++        
Sbjct: 263 LNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFT---GLPHRFQLVFEHNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGL-----PVDGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +I  ++  G     L +  P    +  +ETM+   + +  SL  GD+V++
Sbjct: 370 HI-KIYCFGRDGEQLAELRPEVSQL--TETMEQAMVLLAKSLAPGDMVLL 416


>gi|238898847|ref|YP_002924529.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466607|gb|ACQ68381.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 445

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 130/358 (36%), Gaps = 38/358 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +  + +  R      ++A+TGS GK+T   ++T       +T     S   +IG+P  L 
Sbjct: 94  IGDIELFCREIPPVPVVAVTGSNGKSTVTTLVTQM----AQTAGWPVSMGGNIGIPA-LK 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
            +       + EL    L      TH +    A +  I   H   +  G+ +  +AK  I
Sbjct: 149 LLKQKSRLIVLELSSFQL----ETTHTLAAKAATVLNITEDHADRYPLGLNQYQAAKLRI 204

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           ++      T  +N DD    L +  +     K   SFG ++       +++   +     
Sbjct: 205 YQN---AHTAVINADDP-LTLPRNGTQKSATKFEVSFGLNQG------QYRLHQDGHDFW 254

Query: 274 VQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +Q   +++        IG H   N L  L +   +    + ++KA       +G   R+ 
Sbjct: 255 LQASDQNVLNTKDMKLIGKHNYLNALAALALADAVDIPREASLKA---LIEYKGLPHRFE 311

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +     I++S   N  S  AAI  +       +G    +LG   +  + S      
Sbjct: 312 KIFEKNGICWINDSKATNVGSTLAAIKSVQ-----CQGTLHLLLGGQGKSADFS------ 360

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +     N   ++  G     L    P       +ET++     ++S L  GD V++
Sbjct: 361 ILQPDLNQNRIQIYCFGQGAETLAALRPEVSQR--TETLEQAMKLLKSRLKKGDTVLL 416


>gi|325856508|ref|ZP_08172197.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|327313073|ref|YP_004328510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
 gi|325483477|gb|EGC86450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|326944914|gb|AEA20799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
          Length = 443

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 114/351 (32%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++    ++        G+  N + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFTNAGYDAGLAGNIGNSLALQV----AEDPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           ++ I EL    L  +    +  R +IA++  I P HL  +    E  A AK  I +    
Sbjct: 151 EYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQNQTA 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     DD   +    K     +   +S  K   +   + + +   E+          
Sbjct: 207 EDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYKIEKPE-----PFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L       I     +   K+L  F   E    R          
Sbjct: 262 MEQEDLSLTGRHNIYNSLAAGIASDISGIKKENIRKSLGDFPGVE---HRLEKVCKVAGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  +   A+  +           I +LG     G+   + +  + +++   
Sbjct: 319 QYINDSKATNVDACWYALESMRT-------PTILILG-----GKDKGNDYNAIKDLVKEK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     L +      I V  + +M             GD V++
Sbjct: 367 CTGIVYL-GADNRKLHENFDGLGIPVRDTHSMKDCVAACTEMAKPGDTVLL 416


>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida W619]
 gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           W619]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 133/355 (37%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA I+AI+GS  K+T   ++    +   K  A  G+          L 
Sbjct: 96  LSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKHVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +      +  +SFG ++  DF+    ++   + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLPVE-----GRPCWSFGLNQ-PDFKAFGLREVDGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +        +  ++AL  F     R +  R   
Sbjct: 258 EFQALMPARELKIRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGLAHRCQWVRA-- 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      D+S   N   + AA++ +  +    +G+ + + G   +  + + +    +A 
Sbjct: 316 -RSGVNWYDDSKATN---VGAALAAIEGLGADIDGKLVLIAGGDGKGADFA-ALREPVAR 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L +AL  ++ +   +T+D          V GD V++
Sbjct: 371 FCRA-----VVLLGRDADRLAEALGDAVPLVRVKTLDEAVQQCAELAVPGDAVLL 420


>gi|116334052|ref|YP_795579.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis ATCC 367]
 gi|116099399|gb|ABJ64548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           brevis ATCC 367]
          Length = 474

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 118/344 (34%), Gaps = 36/344 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GKTTT  M+   +   ++    + + N  I        +  D D  + E+  
Sbjct: 129 LIAVTGSNGKTTTTTMIQKMVDHDRRAGKAVYAGNIGIPASRVAQAVTAD-DTLVLEVSS 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L      T    PHIAV+T I   HL      E   +AK +I           +N+D 
Sbjct: 188 FML----VGTTTFHPHIAVLTNIFSNHLDYHKTRENYVAAKMKITANQTADDYFVVNFDS 243

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHG 287
                L  +S A     +  F +   +  Q   ++   +     +  + + +        
Sbjct: 244 PELRELSEQSAA----QVVPFSREARS--QAGAYELNGD-----LYFKDEKLMAASDIKV 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N L  + +  I        +   +V     G   R +  L        ++S  
Sbjct: 293 PGDHNVENALAAIAVAKIKGVSTAAIV---AVLRSFGGVRHRTQYVLEADGRQYYNDSKA 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +  + + A+   +          + + G +       +     L   L   ++  V L 
Sbjct: 350 TDMEATEMALKGFTA-------PVVLIAGGLDRGYTFEK-----LVPSL-KAHVKAVVLV 396

Query: 408 GFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     L+DA  ++    +  SE ++            GD++++
Sbjct: 397 GQTAKLLEDAAKKAGIQTIRLSENVETAVPTAYELSDAGDIILL 440


>gi|30061655|ref|NP_835826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 2457T]
 gi|30039897|gb|AAP15631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
 gi|313646529|gb|EFS10990.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
          Length = 438

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +              +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DCHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L+ L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LVRYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|320183625|gb|EFW58468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           CDC 796-83]
          Length = 438

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T   +   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSWKAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|255010090|ref|ZP_05282216.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis
           3_1_12]
 gi|313147885|ref|ZP_07810078.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides fragilis 3_1_12]
 gi|313136652|gb|EFR54012.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides fragilis 3_1_12]
          Length = 464

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 140/407 (34%), Gaps = 42/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A +  A  +VV T  V    +     +  D+      +  V   +   +  + + G+
Sbjct: 63  IPDACKDPATTLVVLTPAVPQEHAEL--TYFRDNGFEIQKRAQVLGTITHSSKGLCVAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L        C            T   +     + + E       E  
Sbjct: 121 HGKTTTSTMTAHLLHHS--HIGCTAFLGGISKNYGTNLLLSPSSPYTVIEA-----DEFD 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              H + P+++VIT   P HL  +   +    +       ++  G + +       E + 
Sbjct: 174 RSFHWLSPYMSVITATDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------REGIS 227

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQN 295
            +        IY++ + K  DF     +  + + +++       ++ +  G+      +N
Sbjct: 228 LQPKVQEGVKIYTYSRDKG-DFHAENIRIGNGEIFIDFIGPDIRIDNIQLGVPVSINIEN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +K 
Sbjct: 287 GVAAMALAYLNGVTAEEIKQGMASFRGVD---RRFDFKIKNDQIVFLSD-YAHHPSEIKQ 342

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWL 406
           ++  + ++  + + +  AV      +   ++ F+ D A+         ++ +Y      +
Sbjct: 343 SVMSMREL--YRDKKITAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQPI 398

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            G     + D L   I     +  + +   +++       +L  GD+
Sbjct: 399 PGVTSQLIYDNLRPGIEKSMCK-KEEILDVLKTKHIEVLITLGAGDI 444


>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 454

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 128/350 (36%), Gaps = 33/350 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA LV+V+  +  ++ +L        +   AL          ++A I AITGS GK+T  
Sbjct: 69  GADLVLVSPGLAPTLPALR----AAREAGIALWSDVELFGRLARAPIAAITGSNGKSTVT 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L     +  +  A  G+        L  A  P + +  + EL    L       H +R
Sbjct: 125 TLLGEMAKAAGRRVAVGGNLGTPALDLLPEAGAP-EPELYVLELSSFQL----HYCHALR 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A I  ++P HL     +E   +AKA IF  + +  T+ LN +D   + L AK+ A  
Sbjct: 180 PRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGDTLVLNGEDPALQSLPAKAPA-- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I  FG +   D            S   + L         H  G H  +N+L    + 
Sbjct: 238 GVEIRRFGHTPQLDAWADDLALH-WPSAAPMPLAD------IHLPGKHNGENVLAAALMA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L        +A + F    G   R +     G     D+S   N  +   AI  L   
Sbjct: 291 NALNLPETAIRQAAADF---RGLPHRLQWVARVGGVDYYDDSKGTNLGASLRAIQAL--- 344

Query: 364 SPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVL--SLYNISHVWLSG 408
                G  + +LG      ++  L ++       VL      I    L+G
Sbjct: 345 ----PGPLVLILGGDAKGADLSPLREALRGQRGAVLLGKDAAILEAILAG 390


>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
 gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
          Length = 468

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 119/358 (33%), Gaps = 31/358 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTL 153
           L  L  A+  RS  T + ITG+ GK+T   +    L +  ++    G+    +  + L +
Sbjct: 112 LALLVAASWPRSLETAL-ITGTNGKSTVTALTGALLEAGGRSTFTGGNLGVPLSELVLAV 170

Query: 154 ARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           AR   +     + E     L  +R         +A++  ++P HL  +  +E  A  K  
Sbjct: 171 ARGEREAPEALVLECSSYQLETLRVHGSPAV-SVAMLLNVSPDHLDRYDSLEHYAETKGR 229

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +F GLE  G   L+  D+F   L+ +      + +   G+           +  +     
Sbjct: 230 VFGGLEPGGLALLSARDAFTPRLR-RFVPEAARCVLVDGEDDRPRLSDASLELGA----- 283

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                G+S++       G H A N L  +     L   +DT    L  F        R  
Sbjct: 284 -----GESIDRRALALAGRHNALNALFAVLAARHLGVSLDTCEATLRRFQALP---HRMN 335

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +      D+S   N AS+ A +    Q         + + G   + G+   +    
Sbjct: 336 PIAERDGVRYFDDSKATNVASVLAGLDGFEQTF-------VLICGGRAKDGDDLGALRPV 388

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           LA          +   G            ++       MD       S    GD V++
Sbjct: 389 LARQGRA-----LVALGESAEQFMAMAKGALPCVRVADMDEAVRVAASCAQPGDAVLL 441


>gi|160883885|ref|ZP_02064888.1| hypothetical protein BACOVA_01858 [Bacteroides ovatus ATCC 8483]
 gi|156110615|gb|EDO12360.1| hypothetical protein BACOVA_01858 [Bacteroides ovatus ATCC 8483]
          Length = 458

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 132/368 (35%), Gaps = 42/368 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   +   +  + + G+ GKTTT  M          +  A +G  + + G  L L++
Sbjct: 101 RAQVLGTITHSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAFLGGISKNYGTNLLLSQ 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E       E     H + P++ VIT+  P HL  +   +    +      
Sbjct: 161 ASPYT---VIEA-----DEFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTT 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + +       + +  +        +Y++ + +  DF     +  + + +++  
Sbjct: 213 LIQPGGALII------RKGISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFV 265

Query: 276 LQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G  +  +  GI      +N +  + +  +     +   + ++ F   +   +R+   L
Sbjct: 266 APGTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKL 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P+ +K ++  + ++  + + +  A+      +   ++ F+ D A+
Sbjct: 323 KNDRIVFLSD-YAHHPSEIKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFAD 377

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------ 439
                    ++ +Y      + G     + D L   I     +  + +   ++       
Sbjct: 378 SLSLLDEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK-KEEILNILKDKNIEVL 436

Query: 440 -SLVDGDV 446
            +L  GD+
Sbjct: 437 ITLGAGDI 444


>gi|218899066|ref|YP_002447477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228902418|ref|ZP_04066572.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
 gi|228966866|ref|ZP_04127910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226711880|sp|B7IUS2|MURD_BACC2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218545114|gb|ACK97508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228792965|gb|EEM40523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857162|gb|EEN01668.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
          Length = 450

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 126/352 (35%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SKA  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISKAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA +F+   +  
Sbjct: 163 VVVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A +    I     F  +K     +       + +   +  +G+ +
Sbjct: 219 YSVINADDADVMELSADTKGQKIL----FSTTKE----IEDGACIKDNA---LYFKGEKV 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L    +     L  F   + R +      N+ F+
Sbjct: 268 VEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         I +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PIVLLAGGLDRGNEFDDLIPYF------K 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L  A  ++    +   +T+D   +   +   + DVV++
Sbjct: 371 NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEDDVVLL 422


>gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
 gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
          Length = 445

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 115/343 (33%), Gaps = 32/343 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA IIAITGS GK+T   ++    ++     A  G+        L L  +       + E
Sbjct: 108 KAPIIAITGSNGKSTVTTLVGEMANAAGVKTAIGGNIGIP---ALDLLDVAEPYQLYVLE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH ++   A +  +   HL  +   E    AK  I++      TI  N
Sbjct: 165 LSSFQL----ETTHSLKAVAATVLNVTDDHLDRYPDFEAYRQAKLSIYQ---DAQTIVTN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD         +  +G  ++     + +AD+ L + + C   +W+  Q +G        
Sbjct: 218 RDDVLTVCATQDNRDVGKHSV----GADDADYGLIQQQGC---TWLAYQGEGIISADDLQ 270

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + ++     D    IK L       G   R            I+++ 
Sbjct: 271 ITGVHNLMNALSAIALLDAAGVD---RIKTLPGLKQFTGLAHRCEFIRKLNDVMWINDTK 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA+  L       +GR   + G   +  +                +I+  + 
Sbjct: 328 ATNVGATLAALDGLKS---SVKGRLYLIAGGDGKGADFGP------LVPALRDDIALTYC 378

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G   +        +  V     +D     I   +  GD V++
Sbjct: 379 FGKDGVRFAGLAENTKLV---ADLDTAIAEISQLVQPGDWVLL 418


>gi|163752976|ref|ZP_02160100.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
 gi|161326708|gb|EDP98033.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
          Length = 450

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 132/379 (34%), Gaps = 40/379 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   +      + + G+ GKTTT  +L   L+       A +G    +    L L  
Sbjct: 101 RAEVLGLITKDTFCLGVAGTHGKTTTSSILGHLLAESGINVTAFLGGIAENYNSNLIL-- 158

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                +  + E        ++     + P IA IT++   HL  +   E +  +  E  +
Sbjct: 159 --KGNEITVVEADEFDRSFLQ-----LSPDIACITSVDADHLDIYGEKEALQDSFIEFTK 211

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G +F+          +      GI    ++G  + +D+ ++  +        E+ 
Sbjct: 212 CIKPNGKLFV----------QEDIQLDGI----TYGFQETSDYHIKNIRIKHGAYVFEIV 257

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              K +E V  +  G H   N L+   +  I+    D   KAL  F   +   +R+   +
Sbjct: 258 TPSKIIEDVQFYIPGRHNLLNGLVAFAMADIIGTPTDRLAKALGTFAGVK---RRFSYQI 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +  F  ID+ Y  +P  + A    + ++ P  +   I          + +  F   LA+
Sbjct: 315 KKTDFVFIDD-YAHHPTEINALHQAVREMYPEKKVTAIFQPHLFSRTRDFADEFAESLAQ 373

Query: 395 -----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +L +Y      + G     L + +        +   + L   + +     D+++ 
Sbjct: 374 FDEIILLEIYPAREKPIEGVTSSWLLNKIKNDQKQLIA--KENLVNHVTTVQT--DILLT 429

Query: 450 KSSNSCGFYRLINLLLEEF 468
             +   G    +  +  + 
Sbjct: 430 VGAGDIGAE--VEKIKNKL 446


>gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
 gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
          Length = 467

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 110/353 (31%), Gaps = 38/353 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   ++A+TGS GK+TT  ++   L+S  +     G+    +         P D    
Sbjct: 116 FDTPPRVVAVTGSNGKSTTSALIHHILTSSGRDSQLAGNIGRGVLDIDP----PGDGGVV 171

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL        R LT    P +AV T ++P HL    G+    +AK  +F         
Sbjct: 172 VLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPDRC- 226

Query: 224 FLNYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--- 279
            +  D++    L    S       +               W   + + ++    +G+   
Sbjct: 227 VIGVDEAEGRYLANQMSEGAADDRVIRVSSGTR--LSGPGWDVFARKGFLTEWRKGRQVA 284

Query: 280 --SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +  V    G H  QN          L           + F   EG   R +     G
Sbjct: 285 SIDLRQVRGLPGAHNHQNACAAYAAARALGVAP---RVVEAAFMSFEGLPHRSQIVAEAG 341

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   N  +   A+    ++     G        M E G         L  +  
Sbjct: 342 GVAYVNDSKATNVDAALKALQAFPKVRWICGGL-------MKEGG---------LGGLAP 385

Query: 398 LY-NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + N+   ++ G         LP  +       M+       +    G+VV++
Sbjct: 386 GFPNVVKAYVIGREAAGFALGLP-GVEAEVCTDMETAVTRAIAEAQPGEVVLL 437


>gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
 gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
          Length = 552

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 137/452 (30%), Gaps = 68/452 (15%)

Query: 4   LWTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           L+   D+L A  ++    G      V+G++IDSR +AP+  F   KG  +    F+  AV
Sbjct: 35  LFDLVDVLHASDVEARVFG-DGAACVDGMAIDSREVAPRNLFVC-KGAGF-RPAFLESAV 91

Query: 62  QKGAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIA 112
             GA   +                 +   P   V DV  A+      +      +  ++ 
Sbjct: 92  AAGAAAYLCEGVGEGLSIPSELVAAAAVTPALVVSDVRRAMALVAPVIYRHPEDQLHVVG 151

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSY-----------NNHIGVPLTLARMPVDVD 161
           ITG+ GK+T   ML   L +  +  + +GS            +N       L R   +  
Sbjct: 152 ITGTKGKSTVAYMLRSILVAAGQEPSILGSIETDDGKVRYESHNTTPEAPDLWRHLRNTV 211

Query: 162 FG-----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214
                  + E+    L   R L   +   I     I   H+S       E+  ++K  IF
Sbjct: 212 DAGRRTMVMEVSSQGLKYDRVL--GLPFEIGCFLNIGRDHISGVEHPDFEDYFASKLRIF 269

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------------FQLR 261
              E      +N      + +   + +     + +F      +             F   
Sbjct: 270 NQCE---VAVVNLATDHVDRVLQAAKSAPC--VATFAVEHAGEGSHGGKVWPVEPLFIAS 324

Query: 262 KWKQCSEQS-WMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
              Q         V+ +    E+           G     N L  + +  +L    D   
Sbjct: 325 GVTQLPTGGLAFTVRERAAEGEIACEEHIELGMPGLFNVDNALAAISMARLLGVGYDAIR 384

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L+          R     +     L    Y  N  S +     +   + + + R +A+
Sbjct: 385 AGLAQIRVPG----RMELVSSADGHVLAIVDYAHNELSFETLFKSVK--AEYPDRRVVAL 438

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            G     G  +Q     L  V   Y    V+ 
Sbjct: 439 FGAP---GGKAQERREALPRVAGAYADHLVYT 467


>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
 gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
          Length = 444

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 116/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQSLAYQV----AECNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTP 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD   +    + H  GI    Y F + K    +        ++ +    +  
Sbjct: 208 DDAFIFWNDDPIIQR---ELHKYGIHGHYYPFAERKE---EGTAAYVEQDKVYFTEPIAF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      ++     +   +AL  F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVE---HRLEKVCRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + I +LG     G+   + + ++A+++  
Sbjct: 319 VDYINDSKATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++  G H   L D   +  + V   ++M             G+ V++
Sbjct: 367 KCTGLIY-MGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|254804973|ref|YP_003083194.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha14]
 gi|254668515|emb|CBA05892.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha14]
          Length = 458

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 130/379 (34%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 103 HRHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQ 162

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP   V+  +   H   F+ +  I +    +   +
Sbjct: 163 SPFFVIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTV 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG         +  +  ++ S  +V L 
Sbjct: 223 PSEGLIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLD 274

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK+   V    IG H   N L  +     +  D+ TA +AL  F   +   +R       
Sbjct: 275 GKTAGRVKWDLIGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK---RRMEIKGTV 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 332 NGITVYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL---- 383

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +SL +   V+    G      +   P    +H  +  D     I  +   GD ++V 
Sbjct: 384 --PVSLKDADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM 441

Query: 451 SSNSCGFY----RLINLLL 465
            SN  GF     +L++ L 
Sbjct: 442 -SNG-GFGGIHTKLLDALR 458


>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 472

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 124/343 (36%), Gaps = 32/343 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + IIA+TGS GK+TT  ++   L+ + K     G+  +               D+ + E
Sbjct: 128 DSKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAGNIGDAFCSYDIE---KPGWDYIVLE 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I    +  +P +AV+  I P H+  ++  E+ A +K  IF+  E T T  L 
Sbjct: 185 ISSFQLDLI----NSFQPDVAVLLNITPDHIDRYNSFEDYALSKVNIFKNQEMTDTAVLF 240

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D    +       A   K  +S   + NA   L         S  +V L   +++    
Sbjct: 241 WDSPEVKHFTKDIKAR--KLYFSLSPNDNAFAYLAN-NYIQFGSETKVPLSYFAIK---- 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N +  +  V  L  +     +A+  F        R          +  ++S 
Sbjct: 294 --GPHNYANAMSAMLAVYALIPEPTKIAEAVKGFKSLP---HRLEYVDTIKGVSFYNDSK 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+++A++   Q       R I     M   G      +  LA  L    +   +L
Sbjct: 349 ATNTDSVRSALNSFEQ-----PIRII-----MG--GSDKGEDYSVLAADLQK-KVKKAYL 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +G     ++      I +      +       S   +GD++V+
Sbjct: 396 TGDTREKMRKTFSGKIPLECIADFELTVRKAFSDSDEGDIIVL 438


>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 130/358 (36%), Gaps = 35/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++  A         IA+TG+ GKTTT  ++   + S  K    +G+  N     +   
Sbjct: 113 IGEIEFAYNFLPNRNYIAVTGTDGKTTTVTLVHDIIKS-YKKARLLGNVGNTFSKEIETI 171

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               DV   I EL    L            HIA +  IA  HL  +  IE+  + K  I 
Sbjct: 172 EEDEDV---ILELSSFQL----ETVEKFHAHIAAVLNIAEDHLDRYKDIEDYFNTKKNIT 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWME 273
               K   + LNYD+ +  +   + +      + +F  KSK A     +  +        
Sbjct: 225 INQNKNDFLILNYDNIYTNIWYNELNGNCKMKLLTFSLKSKFATIYYNEEDEY------- 277

Query: 274 VQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  + + +  + +   IG H   N+L  + I       V+   KA++ F   +G   R  
Sbjct: 278 IYYENEKLFSIANRKVIGKHNIANILAAVLICLKDDIPVEYIEKAVNNF---KGIEHRVE 334

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     +++S      SM + +S L           I ++G     G         
Sbjct: 335 LVATINGVKYVNDSKA---TSMNSVMSALKSFDKDI----ILIMG-----GRNKNIDFTH 382

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L  +++   +  + L G    AL + L     +   +  D  F +  +  ++GD V++
Sbjct: 383 LNNIINAR-VKKLILIGEAAEALSEMLHFENKIIVRDLTDA-FNYASAISINGDTVLL 438


>gi|317504112|ref|ZP_07962114.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
 gi|315664784|gb|EFV04449.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
          Length = 458

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 133/369 (36%), Gaps = 37/369 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      +   G+ GKTTT  M    +        A +G  + + G    L++
Sbjct: 101 RAQVLGTLTRSHKGLCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKNYGTNYILSK 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              + D+ + E       E     H +RP ++VIT+  P HL  +   E    +     E
Sbjct: 161 ---NSDYIVIEA-----DEFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTE 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + +         L+ K H      +Y + + +  DF        + +   +  
Sbjct: 213 LIQPGGALII------HRNLEMKQHVQEGVKVYDYSR-EAGDFHAENVVIDNGEICFDFI 265

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +++  V+ G       +N +  + +  +     +     +  +    G  +R+   +
Sbjct: 266 SPIENVARVNLGQPIPINIENAIAAMAMAQLNGCTAEELRYGMRTY---AGVDRRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P   K  +     +    +GR+I V+     +   ++ F+++ A+
Sbjct: 323 KDNRHVFLSD-YGHHP---KEVLQSARSLKELFKGRKITVMFQ-PHLYSRTRDFYLEFAD 377

Query: 395 VLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS         +Y      + G   + + D L  ++     +  D +  +++    D D
Sbjct: 378 ALSNFDEVILTEIYPAREEPIEGVTSMLIYDHLKPNVEKTMIK-KDEVLDYVKG--RDFD 434

Query: 446 VVVVKSSNS 454
           V+VV  +  
Sbjct: 435 VLVVLGAGD 443


>gi|322411163|gb|EFY02071.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 443

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 123/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 107 GVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 152

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D  
Sbjct: 153 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQE 210

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + +   +       IY +G  +  DF      + +  S   V+  G+ +   H    G 
Sbjct: 211 LKKITVNA------PIYYYGFEEENDFVASDVIRTTHGSDFTVKHDGQIIGRFHVPAYGR 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D++   + L  F   + R             T+I + +  +P
Sbjct: 265 HNILNATAVIANLFVAGIDMELVAEHLKTFSGVKRRFTEKLI-----NETIIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFALALNEADSVY-----LAQIYG 374

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   L +   V   + +  L         D  V V   +     Y 
Sbjct: 375 SAREVDKGEVKVEDLAAKLTKPSKVVTVDNVSPLLDH------DNAVYVFMGAGDIQLYE 428


>gi|189082527|sp|Q10XH7|MURC_TRIEI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 539

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 158/430 (36%), Gaps = 73/430 (16%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L  P+F   D+L AL +             IA+ G+ GKTTT  ++   L    
Sbjct: 134 YKAAVELGCPIFHRSDLLAALIQ---------DYQSIAVAGTHGKTTTSSLIGFMLLEAG 184

Query: 135 -KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                 IG   +  G    L R P    + + E   S    ++        HI V+T I 
Sbjct: 185 LDPTIVIGGEVDAWGGNARLGRSP----YLVAEADESDGSLVKLSA-----HIGVVTNIE 235

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H  ++  ++++        E  +    +    D S             ++   S+  +
Sbjct: 236 LDHPDHYDSLDQVVEIFQVFKENCQN---LVGCIDCSTVRE--------KLQPTISYSIN 284

Query: 254 --KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              +A +++      S  +   V  +G+ + ++    +G H   N L  + +  +L  + 
Sbjct: 285 FESDAHYKVDCVHYQSNVTLARVWEKGQILGQLKLRLLGKHNLSNALAAVAVGRLLGLEF 344

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-----SQISP 365
            T   A+++F   EG  +R+           +D+ Y  +P+ + A ++        ++SP
Sbjct: 345 STITSAIALF---EGAHRRFEYRGECNGIVFVDD-YAHHPSEINATLAAANLQKNQELSP 400

Query: 366 HGE-----------------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
                                R +A+          +Q+F  + A+  +  +   +++++
Sbjct: 401 KPHISTKKLTLKTQNNSLKIERVVAIF--QPHRYSRTQAFISEFAQSFNDADMVIVTNIY 458

Query: 406 LSGF------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +G       +   + +A+ R    V+Y  ++D +  F+   L  GD+ +  S+      
Sbjct: 459 SAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLYQVLKPGDLAIFLSAG--NLN 516

Query: 459 RLINLLLEEF 468
           ++I  L+  +
Sbjct: 517 QIIPELMARY 526


>gi|156973107|ref|YP_001444014.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524701|gb|ABU69787.1| hypothetical protein VIBHAR_00786 [Vibrio harveyi ATCC BAA-1116]
          Length = 452

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 148/413 (35%), Gaps = 39/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D   + +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQSLQDVIER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           T   F    + D+Q    K   + S  EV LQG+ + +V    +G H   N LM +    
Sbjct: 236 TEKQFS-GVDGDWQAH--KLVVDGSKFEVSLQGEKVGIVDWVLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVAPELACQALGRFINTK---RRLELKGEEQGVTVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVWLSGFHVL--ALKDALP 419
             GE R +AVL         S +    + +     SL++   V+L     +  ++++   
Sbjct: 347 KVGEKRILAVLE------PRSATMKRGVNKNTLAASLHSADEVFLFQPDSIDWSVQEIAD 400

Query: 420 RSIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
           +     + +  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 401 QCKQPAFVDAEMDSFVAKIVERAQPGDQILVM-SNG-GFGGIHGKLLEQLKQK 451


>gi|113477459|ref|YP_723520.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
 gi|110168507|gb|ABG53047.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
          Length = 556

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 158/430 (36%), Gaps = 73/430 (16%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +   L  P+F   D+L AL +             IA+ G+ GKTTT  ++   L    
Sbjct: 151 YKAAVELGCPIFHRSDLLAALIQ---------DYQSIAVAGTHGKTTTSSLIGFMLLEAG 201

Query: 135 -KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                 IG   +  G    L R P    + + E   S    ++        HI V+T I 
Sbjct: 202 LDPTIVIGGEVDAWGGNARLGRSP----YLVAEADESDGSLVKLSA-----HIGVVTNIE 252

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H  ++  ++++        E  +    +    D S             ++   S+  +
Sbjct: 253 LDHPDHYDSLDQVVEIFQVFKENCQN---LVGCIDCSTVRE--------KLQPTISYSIN 301

Query: 254 --KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              +A +++      S  +   V  +G+ + ++    +G H   N L  + +  +L  + 
Sbjct: 302 FESDAHYKVDCVHYQSNVTLARVWEKGQILGQLKLRLLGKHNLSNALAAVAVGRLLGLEF 361

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-----SQISP 365
            T   A+++F   EG  +R+           +D+ Y  +P+ + A ++        ++SP
Sbjct: 362 STITSAIALF---EGAHRRFEYRGECNGIVFVDD-YAHHPSEINATLAAANLQKNQELSP 417

Query: 366 HGE-----------------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
                                R +A+          +Q+F  + A+  +  +   +++++
Sbjct: 418 KPHISTKKLTLKTQNNSLKIERVVAIF--QPHRYSRTQAFISEFAQSFNDADMVIVTNIY 475

Query: 406 LSGF------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            +G       +   + +A+ R    V+Y  ++D +  F+   L  GD+ +  S+      
Sbjct: 476 SAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLYQVLKPGDLAIFLSAG--NLN 533

Query: 459 RLINLLLEEF 468
           ++I  L+  +
Sbjct: 534 QIIPELMARY 543


>gi|323126630|gb|ADX23927.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 443

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 124/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 107 GVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 152

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D  
Sbjct: 153 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQE 210

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + + A +       IY +G  +  DF      + +  S   V+  G+ +   H    G 
Sbjct: 211 LKKITANA------PIYYYGFEEGNDFVTSDIARTTHGSDFTVKHDGQIIGRFHVPAYGR 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D++   + L  F   + R             T+I + +  +P
Sbjct: 265 HNILNATAVIANLFVAGIDMELVAEHLKTFSGVKRRFTEKLI-----NETIIIDDFAHHP 319

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFALALNEADSVY-----LAQIYG 374

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   L +   +   + +  L         D  V V   +     Y 
Sbjct: 375 SAREVDKGEVKVEDLAAKLTKPAKIVTVDNVSPLLDH------DNAVYVFMGAGDIQLYE 428


>gi|257455148|ref|ZP_05620386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
 gi|257447481|gb|EEV22486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
          Length = 477

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 147/433 (33%), Gaps = 46/433 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V     +   I   S P F  + VL                 ++A+ G+
Sbjct: 67  VGNAMKRGIEAV--EYMLNERIPYTSGPQFLAEQVLQY-------------RHVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVD-FG 163
            GKTTT  ML   L         +      +  P    +               D + + 
Sbjct: 112 HGKTTTTTMLAWILHYAGIDAGFLIGGVPLVDTPDERLKKAFAHSSYLGSDTTADHEGYF 171

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  A++  +   H   F  +  I +    +   +   G
Sbjct: 172 VIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFPNLAAIQTQFHHMVRMIPSNG 231

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I +  D    E    K     I        + +AD+Q +  KQ  + S  EV   G   
Sbjct: 232 KIIMPADTESLEETLKKGCWTPIWRTAIASTNPHADWQAKLMKQ--DGSQYEVMFDGHKG 289

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G H   N L+ +     +   V  A +ALS F   + R +      N G    
Sbjct: 290 QVHWQMSGLHSVNNGLVAIAAAYNIGVSVAQACEALSNFAGIKRRMELVGTIDNHGKHIE 349

Query: 342 IDESYNANPASMKAAIS-VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           + + +  +P +++  +     + + + + +  AV+    E    +         +    +
Sbjct: 350 VYDDFAHHPTAIETTLDGAKKRFADNPKRKIWAVI----EPRSNTMKLGTHQGLLAPSAS 405

Query: 401 I-SHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           I   V       L  ++ DA+  + +     + D +   I + + D D V+V  SN  GF
Sbjct: 406 IADQVIWYQPANLDWSVADAIGNAANQQVMTSTDAIIEHIAAHIGDDDAVIVM-SNG-GF 463

Query: 458 Y----RLINLLLE 466
                RL+  L +
Sbjct: 464 EGIHGRLVKALQQ 476


>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
          Length = 469

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 114/353 (32%), Gaps = 31/353 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
            A IIA+TG+ GKTTT  ++    +              +IGVP + +       D  + 
Sbjct: 109 PARIIAVTGTDGKTTTATLIAAICADHALAAGYRVFSVGNIGVPFSSMVGSMASGDIAVV 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E+    L          RP IA++T I P HL  +   +   A AK  IF    +  T+ 
Sbjct: 169 EVSSYQLEG----CTWFRPDIALMTNITPDHLDRYDGSMRLYAEAKYRIFSRQRQDDTLI 224

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD      + +     +  + +FG               +E  W+ +   G   E V
Sbjct: 225 VNADDPILRQ-RFEERLGVVPQLAAFGLDAGRTRAFAASGAVTEGGWITLFKSGSLDERV 283

Query: 285 H--------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      +G H   N L            + +  +AL  F   E    R       
Sbjct: 284 IAHEDLLKRGFMGRHNLSNALAAALAADAAGVPLSSIKRALKAFGGVE---HRQEYVCEI 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  +M+ A+  +S       G  + + G     G      + +L   L
Sbjct: 341 DGVICINDSKATNLNAMRQALEAVS-------GPVVLIAG-----GRDKDGDYREL-RDL 387

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G        A   S+    + ++             G  ++ 
Sbjct: 388 VASKVEMLVALGEAADRFTGAYGESVPAVTAGSLREAVRLGLQHARRGSTLLF 440


>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
 gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
          Length = 434

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 127/367 (34%), Gaps = 48/367 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I A+TGS GKTTT  ++   L          G+    +   L+      D D  + E
Sbjct: 84  PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL---LSKIEEIKDTDKVVLE 140

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T    P++AV+T ++P HL     +EE  SAK  IF        + LN
Sbjct: 141 LSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVLN 195

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +D+        ++       +  F +     K A  +         ++  E+    K+ +
Sbjct: 196 FDNDITREFAGEAKG----DVVYFSRKTVLEKGAMLKDDMLVFRDGETETEI---AKASD 248

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +V  G+  H  +N L     V     D D   K  + F   E    R             
Sbjct: 249 IVIPGV--HNVENFLAATAAVIDC-VDRDVIRKVATTFTGVE---HRIELVREINGVKFY 302

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  ++P    A ++           + I + G     G   +  +  L  V++   + 
Sbjct: 303 NDSIASSPTRTIAGLNSFKD-------KVILIAG-----GYDKKIPYDALGPVIAE-KVK 349

Query: 403 HVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVK-SS 452
            + L G     ++ AL              +    +++            GDVV++  +S
Sbjct: 350 CLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSPAS 409

Query: 453 NSCGFYR 459
            S   ++
Sbjct: 410 ASFDMFK 416


>gi|255010087|ref|ZP_05282213.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 444

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 119/352 (33%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +       + 
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEEEH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R  IAV+  I P HL  +   ++   +AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTS 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K         +S  K + +   +   +       +   +   
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGICAHLYPFSAIKEEGSIAYVEDHEV-----VITAPIAFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L      ++     +   +ALS F   E    R          
Sbjct: 262 MEQEQLALTGQHNLYNSLAAGISANLAGITKENIRRALSDFQGVE---HRLEKVARVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ E++   
Sbjct: 319 DFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|224536615|ref|ZP_03677154.1| hypothetical protein BACCELL_01490 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521706|gb|EEF90811.1| hypothetical protein BACCELL_01490 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 482

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 123/367 (33%), Gaps = 40/367 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +   +  + + G+ GKTTT  M    L        C            T   +
Sbjct: 126 RAQVLGTITHSSKGLCVAGTHGKTTTSTMAAHLLYQS--HVGCTAFLGGISKNYGTNLLL 183

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + + E       E     H + P+++VIT   P HL  +   E    +       
Sbjct: 184 SQSSPYTVIEA-----DEFDRSFHWLSPYMSVITATDPDHLDIYGTEEAYLESFRHYTTL 238

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++  G + ++ D      +  K        +Y++ +++  DF     +  + + +++   
Sbjct: 239 IQPGGALIIHKD------IALKPDVQSGVKVYTYARTEG-DFHAENIRIGNGEIFIDFVA 291

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + ++          +N +  + +  +  A  +   + ++ F   +   +R+   + 
Sbjct: 292 PDTRINDIQLGVPVSINIENGVAAMALAHLNGATDEEIKRGMASFRGVD---RRFDFKIK 348

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                 + + Y  +PA +  ++  +  +  + + +  A+      +   ++ F+ + A+ 
Sbjct: 349 NDKVVFLSD-YAHHPAEIAQSVKSIRDL--YQDKKITAIF--QPHLYTRTRDFYKEFADS 403

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------- 439
                   ++ +Y      + G     + D L   I        + +   +         
Sbjct: 404 LSLLDEVILVDIYPAREQPIPGVTSQLIYDNLRPGIEKCMCR-KEDILNLLSQKKIEVLI 462

Query: 440 SLVDGDV 446
           +L  GD+
Sbjct: 463 TLGAGDI 469


>gi|167647631|ref|YP_001685294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           sp. K31]
 gi|189082872|sp|B0T833|MURD_CAUSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167350061|gb|ABZ72796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter sp.
           K31]
          Length = 469

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 100/301 (33%), Gaps = 11/301 (3%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+    G+ + +     ++G        V   +    +   AA    K  IIAITG+ G
Sbjct: 67  AALMLSPGVPLTHPKPHWTVGKAKAAGVEVLGDIELFARTVNAAPEHKKPKIIAITGTNG 126

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++        +     G+    +                + EL    L     L
Sbjct: 127 KSTTTALIGHLCRQAGRDTRVGGNIGEGVLG----LEDMHGGAVYVLELSSYQLD----L 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  ++P   V+  I+P HL    G++   +AK  IF    K  T  +  DD + + +  +
Sbjct: 179 TSSLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQGKGDTAIIGVDDPWCQQICTE 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A   +TI+     K     +   +     +  E   +   +       G H  QN   
Sbjct: 239 ITAANRRTIWPISAGKAMGRGVYALQGVLYDATGERVTEMADLLRARSLPGRHNWQNAAA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +      A+  L  F    G   R       G    +++S   N  + + A+S
Sbjct: 299 AYAAAKAIGIPAHQAVDGLMSF---PGLAHRMETVGKLGKVRFVNDSKATNADAARQAMS 355

Query: 359 V 359
            
Sbjct: 356 S 356


>gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Nigg]
 gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Weiss]
 gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
          Length = 802

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 139/388 (35%), Gaps = 52/388 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++  + A L  +   I +TGS GKTT   ++T+ L    KT +  IG  N       + 
Sbjct: 90  IHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIGGLNGEGINGSS- 148

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  ++ + E   S  G IR  +    P  +VIT I   HLSNF G  E   A  + 
Sbjct: 149 -----GSEYFVAEADESD-GSIRNYS----PEFSVITNIDDEHLSNFGGDRERLLASLQD 198

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F    +    + N D S                 ++FG + + D  +  ++Q   +S+  
Sbjct: 199 FSTKTRQ-ICWYNGDCSRLR---------SCLVGHTFGFTSSCDLHILTYRQEGWRSFFT 248

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V+ Q    E V    +G H   N    +G+   L  D DT   AL  F   + R +R   
Sbjct: 249 VRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQRFPGVQRRLQR--- 305

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCE-MGELS 385
             N     L  E Y  +P+ +   +  +         RR+           + E MG   
Sbjct: 306 -KNSSEVFLFLEDYAHHPSEIACTLQAVRSA---VGSRRVLAICQPHRFSRLKECMGCFP 361

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVH--YSETMDGLFLFIQ 438
            +F     +      ++ V+ +G          L  ++ R   V   Y      L  F++
Sbjct: 362 SAF-----KGADEVLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVP-FSELQGFLE 415

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +   DV V   +       L   L +
Sbjct: 416 KHIRVHDVCVALGAGDI--EVLGESLRD 441


>gi|291563986|emb|CBL42802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SS3/4]
          Length = 448

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 126/373 (33%), Gaps = 42/373 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  +D+    +      A   SK  + AITG+ GKTTT  +    +    K+   +G+  
Sbjct: 83  VAVIDEAKIPIWSEIELAYHCSKGKLAAITGTNGKTTTTALTGEIMRKFYKSVFVVGNIG 142

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +        A    D    + E+    L  I        P+++ IT I P HL     +E
Sbjct: 143 DPYTAH---ALETTDESVTVAEVSSFQLETI----MDFHPNVSAITNITPDHLDRHKTME 195

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                K  I     +  T  LNY+D                 +  F   +  D       
Sbjct: 196 CYIQVKEGITRNQTEEDTCVLNYEDPVLREFGKTLKC----KVLYFSSKEKLD-----EG 246

Query: 265 QCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +  ++  +  GK+ +       + IG H  +N++  + I   L   +D   +A   F
Sbjct: 247 IFMDGDFIVYRHDGKNEKVLDVNELNIIGRHNHENVMTAVAIAIHLGVPMDMIREACREF 306

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              E    R      +   T  ++S   NP    AAI  +  +     G  + + G    
Sbjct: 307 KAVE---HRIEYVRERFGVTYYNDSKGTNPD---AAIQAIKAMP----GPTLLIAGGY-- 354

Query: 381 MGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLF 436
                   H +  E +  ++  + ++ L G     + +   +     + Y+E M      
Sbjct: 355 ------DKHSEYDEWIENFDGKVRYLVLIGQTRDKIAECAKKHGITDIMYAEDMQEAVQV 408

Query: 437 IQSSLVDGDVVVV 449
             S    GD V++
Sbjct: 409 CASYANAGDYVLL 421


>gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
 gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +   P   ++ +SIDSR++   + F  + G   D H FI  A   GA
Sbjct: 5   TVKEILEATGGRLLCGSPDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
                +   V        P   V D   AL  L    R R K  ++ ITG
Sbjct: 65  AATFTSEHDVMEDNR---PWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111


>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
 gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
          Length = 442

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 117/344 (34%), Gaps = 53/344 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +   I+A+TGS GKTTT  +++  L +  +     G+    +   + L+  P DV   + 
Sbjct: 113 TPEPIVAVTGSNGKTTTVMLISALLEAAGRRVFTGGNIGTPLSDHV-LSEEPADVV--VL 169

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L     LT   RP +AV+   A  HL   + ++E   AK  IF       T  +
Sbjct: 170 EVSSFQL----QLTKTFRPKVAVLLNFAANHLDWHADLDEYLDAKLRIFATQRPDDTAIV 225

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +  +   +LL  +       T Y                  +  S            +  
Sbjct: 226 S--EELRDLLSGRPFTRAGVTWY------------------AAASGF----------LCP 255

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   NM            D+  A +  + F P      R +    +G    +D+S
Sbjct: 256 RLAGVHNQANMEAAYLACRAFGVDIKLARQVFADFVPAP---HRIQIIGEKGGVLFVDDS 312

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 +M+AAI          +     + G + + G+L           L    +  V 
Sbjct: 313 KATTVTAMEAAIRSF-------DRPVRLLCGGVWKGGDLEAML------PLVKEKVVAVG 359

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G      + A    + V Y+ T+      I +    GD V++
Sbjct: 360 LFGGSREVFETAFAGVVPVRYAPTLAEAVARIYADAAPGDAVLL 403


>gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 424

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 122/326 (37%), Gaps = 48/326 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  I EL    L    + T   +P IAVI  I+  HL     ++    +K +IF+   + 
Sbjct: 126 DVAILELSSFQL----YSTKTFKPKIAVILNISKDHLDWHKKMKHYILSKFKIFKNQTEE 181

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQL 276
             + LNYDD+  + +KAKS       IY F  ++         L+  ++  E     + L
Sbjct: 182 DYLILNYDDNCLKQIKAKSQ------IYYFSLNQLPQDKKGIYLKNIEKSGE---YILTL 232

Query: 277 QGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           Q K    ++V    +G H  QN++ +L +  +   D+D  +    V    +    R    
Sbjct: 233 QDKEKIDIKVKTSLVGLHNLQNIMASLVVSYLYGLDLDKVL---KVIQEFKPLSHRIEFV 289

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +    +  ++S      +++ AI    +         + +LG + + G+ S      + 
Sbjct: 290 SSINGVSFYNDSKATTVQAVEKAIDSFDK-------NVVLILGGINKGGDFS------VL 336

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV------ 447
           +      +    + G     +K  +     V  +++++   +   ++   GD V      
Sbjct: 337 KDKLKQKVKKAIIIGRDKNQIKSMIEEYTQVELADSLEEAVIKSYNTAEKGDTVILSPGC 396

Query: 448 ----VVK--SSNSCGFYRLINLLLEE 467
               + K  +     F  ++  L  +
Sbjct: 397 ASFDMFKSYADRGNQFINIVKNLENQ 422


>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf-5]
 gi|81174950|sp|Q4K6J1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf-5]
          Length = 448

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 141/382 (36%), Gaps = 42/382 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA I+AI+GS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLGAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   +  N  D+    L  +         ++FG SK  DF+    ++   + ++  
Sbjct: 207 RGARQ---VVFNRQDALTRPLIGE-----GLPCWTFGLSK-PDFKAFGLREEDGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +   +    D  + AL  F   E R +  R   
Sbjct: 258 EFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLAALRTFAGLEHRCQWVR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +       ++S   N   + AA++ +  +    EG+ + + G   + G   +     +A 
Sbjct: 315 DLDGVAYYNDSKATN---VGAALAAIEGLGADIEGKIVLIAGGDGK-GADFKDLRGPVA- 369

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
                N   V L G     + +A+  ++ +    ++       +++   GDVV++    +
Sbjct: 370 ----ANCRAVILMGRDSDQIGEAIGDAVPLIRVGSLQEAVEQCRATAQPGDVVLLSPACA 425

Query: 452 S---------NSCGFYRLINLL 464
           S             F R++  L
Sbjct: 426 SFDMFKNYEDRGHQFVRIVEEL 447


>gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 1313]
          Length = 466

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 127/367 (34%), Gaps = 48/367 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I A+TGS GKTTT  ++   L          G+    +   L+      D D  + E
Sbjct: 116 PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL---LSKIEEIKDTDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T    P++AV+T ++P HL     +EE  SAK  IF        + LN
Sbjct: 173 LSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +D+        ++       +  F +     K A  +         ++  E+    K+ +
Sbjct: 228 FDNDITREFAGEAKG----DVVYFSRKTVLEKGAMLKDDMLVFRDGETETEI---AKASD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +V  G+  H  +N L     V     D D   K  + F   E    R             
Sbjct: 281 IVIPGV--HNVENFLAATAAVIDC-VDRDVIRKVATTFTGVE---HRIELVREINGVKFY 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  ++P    A ++           + I + G     G   +  +  L  V++   + 
Sbjct: 335 NDSIASSPTRTIAGLNSFKD-------KVILIAG-----GYDKKIPYDALGPVIAE-KVK 381

Query: 403 HVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVK-SS 452
            + L G     ++ AL              +    +++            GDVV++  +S
Sbjct: 382 CLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSPAS 441

Query: 453 NSCGFYR 459
            S   ++
Sbjct: 442 ASFDMFK 448


>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
           MP688]
 gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           MP688]
          Length = 460

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 122/354 (34%), Gaps = 30/354 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L    R RS   +IAITG+ GKTT   ++     +        G+    +   L     
Sbjct: 100 ELFAQFRPRSS-KVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVET 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L      T  + P  A +  +   H+  + G+ E A+AKA I   
Sbjct: 159 DGAPDVYVLELSSFQL----ETTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARI--- 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L+  G   LN +D++   +     AL  + + +FG     +          +Q W+    
Sbjct: 212 LKGAGVQVLNREDAWCRNM-----ALPDQPVVTFGLDLPVESHAYGLLALHDQLWLAQGA 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H A N L  L +   +  D       L  F   +G   R     + 
Sbjct: 267 HPILHVEELRIPGLHNAANALAALALCRAIGVDWAPLQHVLREF---KGLPHRVEWVADL 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 D+S   N  +  AA++ L         + + + G   +  + S           
Sbjct: 324 HDIAFYDDSKGTNVGATCAALAGL-------PRKVVLIAGGDGKGQDFSP------LREP 370

Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              N   V L G     ++ AL  S +   ++ +++       ++   GD V++
Sbjct: 371 VDQNARAVVLIGRDAALIEAALQGSPVPRLHAASLEEAVQQAYAAATPGDAVLL 424


>gi|325283995|ref|YP_004256536.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus proteolyticus
           MRP]
 gi|324315804|gb|ADY26919.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus proteolyticus
           MRP]
          Length = 484

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 149/430 (34%), Gaps = 39/430 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD        G   V V     A   +       +D  +  L ++ + A L      + 
Sbjct: 65  GHDAAHLQAHSGEPAVSVLVASEAVPKTHPEVCAALDAGISVLPRMQLLAELLEAGPSVG 124

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  M+ +AL+      A          VP   A         + E+  S  
Sbjct: 125 VIGTHGKTTTSSMIAVALAGAGLDPAAFVGG----IVPEFGANARAGQGPFVAEVDESD- 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLS-----NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +    AV T     H+       +  +EE  +  A+     ++   +    
Sbjct: 180 ----RRFAQLSCETAVFTNAEDDHVGGNQATYWETVEEQHAGFAQFVSQAKR---VLYYA 232

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D    E    +    G     S+G ++   ++    +     +   V  +G+ + +    
Sbjct: 233 DWQGLEGRSLEHLVAGCAEQLSYGVAEGCTYRAENLRPDPGGTSFTVTCRGEVLGQARVS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G+H A N L  L +  +   D   A  AL+ F   +G G+R++         ++D+ Y
Sbjct: 293 LPGHHNAMNALAALAVTHLYGGDFGRAALALAAF---KGPGRRWQHIGELHGAQVVDD-Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--------FHIDLAEVLSL 398
             NP  ++A     +  +    GRR+ V+          QS           D   VL +
Sbjct: 349 AHNPTKLQA-----AVQAAQQTGRRVRVVFQPHRYLRTQQSWPRLADALMSADEVMVLDI 403

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                + + G H   + D +  S H    Y      +  +++ +  +GD++V   +    
Sbjct: 404 AAAGELPIEGIHSQLIVDRMSSSGHTSASYWPQRGDVVDYLRRTAGEGDIIVTMGAGDV- 462

Query: 457 FYRLINLLLE 466
            ++L   L+E
Sbjct: 463 -WQLARQLVE 471


>gi|311068041|ref|YP_003972964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
 gi|310868558|gb|ADP32033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
          Length = 451

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 122/346 (35%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + 
Sbjct: 111 TDAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RPHI++I  +  AHL      E    AK  ++    ++ T  +
Sbjct: 168 ELSSFQLMG----THAFRPHISLILNVFDAHLDYHHSRENYEKAKQNVYLHQLESDTAVV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L     A  +    +    + A  +       +E           S+E V 
Sbjct: 224 NQDDETVVRLAEAGKAASLAFSATKPLERGACVKDGMILFDNEAIL--------SLEDVV 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + +V    A  +   K L+ F   + R +      ++ F+   ++S
Sbjct: 276 -LPGAHNLENILAAVAVVKTAGASNEAIKKVLTSFTGVKHRLQYVTTIQDRKFY---NDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S           + + +L    + G         +       N+  + 
Sbjct: 332 KATNVLATSKALSAFE--------KPVLLLAGGLDRGNGFDELKPYM------QNVKAIL 377

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L+         HV   + ++       +   +GDV+++
Sbjct: 378 TFGQTAPKLEKLGAELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
 gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 450

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 124/364 (34%), Gaps = 41/364 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ +A RL  KA I AITG+ GKTTT  +L     +  +     G+    +    
Sbjct: 93  LEILGEVELAYRLS-KAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIYAA 151

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            L   P D    + E+    L          RP I+ I  I P HL      E  A+ K 
Sbjct: 152 -LEAGPNDHI--VAEISSFQL----ETVKEFRPKISCIINITPDHLDRHKTFENYANIKG 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IFE   +   + LNYDD     LK ++ A     ++ F + K     L       E   
Sbjct: 205 RIFENQREEEYVVLNYDDPVTWGLKERAKA----KVFPFSRKK----VLENGAYVKEGF- 255

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             + LQ K +  V   +  G H  +N L    +  +   +VD     L  F   E    R
Sbjct: 256 --LYLQNKKVIKVEDIYIPGEHNLENALAASSVAYLSGIEVDAIETTLRTFKGVE---HR 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                        ++S   NP +   AI  L           + + G     G    S  
Sbjct: 311 IEFVAEIEGIKFYNDSKGTNPDASIKAIQALKT-------PIVLIAG-----GYDKGSEF 358

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGD 445
            +  +      +  + L G     +K    +       +   ++++            GD
Sbjct: 359 DEFVKTFDK-KVRKLILIGQTAQKIKKTALKYSYPEEDIFLVDSLEEAVRKAYEVAEKGD 417

Query: 446 VVVV 449
            V++
Sbjct: 418 SVLL 421


>gi|311280932|ref|YP_003943163.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
 gi|308750127|gb|ADO49879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
          Length = 438

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 136/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +        G+      + L ++R     +  
Sbjct: 101 REAQAPVVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDVSR-----ELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCISFGINMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFG---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + +      L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLWLLLGGDGKSADFAP-----LKRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 365 I-RLYCFGRDGDELAALRPEVS--TLTETMEQAMRLIAPQVKPGDMVLL 410


>gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
 gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
          Length = 466

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 129/412 (31%), Gaps = 52/412 (12%)

Query: 59  HAVQKGA---GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAVAAR---L 104
              + GA      ++ +  +  +     PV          VD+ +G   +    A     
Sbjct: 57  DLTRAGAFEGIAALITSPGIPHLYPRPNPVIAAAMAAGVPVDNDIGLFFRSWATAGWDDF 116

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 + ITGS GK+TT  ++   L    +     G+    +         P D +  +
Sbjct: 117 DVTPRTVCITGSNGKSTTTALIHHILKHAGRATQMAGNIGRGVLD----LDPPEDGEVVV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL        R LT    P IAV T ++P H+   SG+    +AK  +F          
Sbjct: 173 LELSSYQTDLARALT----PDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEGAPD-RAV 227

Query: 225 LNYDDSFFELLK-AKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGK--- 279
           +  D+     L    +       +     +K   DF    W   + + ++    +G+   
Sbjct: 228 IGVDEPEGVYLANQMAMGATDDRVIRVSSAKKLGDF---GWSVFARKGFLAEWRKGRQVA 284

Query: 280 --SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +  V    G H  QN          L        +A   FH   G   R +    + 
Sbjct: 285 SIDLRGVKALPGAHNHQNACAAYAACRSLGLAPKLIEEA---FHSFGGLPHRSQTIAEKR 341

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   N  S   A+   S I       R  V G M + G +S       A    
Sbjct: 342 GVRYVNDSKATNVDSAAKALEAFSNI-------RWIV-GGMGKEGGVS-------ALKPL 386

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L ++   +  G         L    H    ETM+            GD V++
Sbjct: 387 LGSVKKTYFIGHSGRDFALELAPLEH-EICETMERAVARAAEEAEPGDTVLL 437


>gi|282880603|ref|ZP_06289309.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305498|gb|EFA97552.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 457

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 141/426 (33%), Gaps = 49/426 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I HA +     +VV T  +    S     +   +    L +  V   L      +   
Sbjct: 61  DEIPHACRNPQVCMVVYTPAIPE--SHMELQYFKSNGFEVLKRAQVLGLLTRTHRGLCFA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    +        A +G  + + G    L+      D+ + E       
Sbjct: 119 GTHGKTTTSTMCAHIMHQSHVDCNAFLGGISKNYGSNYILS---DTSDYIVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H +RP ++VIT+  P HL  +   E    +       ++  G + +       E
Sbjct: 171 EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTTLIKPGGALII------HE 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            L+ +        ++ +  +   DF     K  +     +     +++  V  G      
Sbjct: 225 GLEMQEDVNNEVRVFRYSLN-GGDFHAENIKIENGTITFDFISPIENVTQVELGHPIPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +     +S +   +   +R+   +N      + + Y  +P  
Sbjct: 284 VENAVAAMAMAQLNGCTAEELRYGMSTYKGVD---RRFDFKVNNERHVFLSD-YAHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           +  +   L ++  + +    A+      +   ++ F+ + AE LS          Y    
Sbjct: 340 IYQSAKSLREL--YHDRHVTAIF--QPHLYTRTRDFYKEFAEALSQLDEVILCDIYPARE 395

Query: 404 VWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----G 456
             + G     + + L       +H     + +   ++    D DV+VV  +         
Sbjct: 396 APIPGVTSALIYNELTCKEKSMIH----KEDVIDLVKK--RDFDVLVVLGAGDLDNYVPQ 449

Query: 457 FYRLIN 462
             ++I 
Sbjct: 450 MTKIIE 455


>gi|167745317|ref|ZP_02417444.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
 gi|167655038|gb|EDR99167.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
          Length = 468

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 129/383 (33%), Gaps = 48/383 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+  I AITG+ GKTTT  ++   +         +G+         ++A    D  
Sbjct: 117 AYQVSRGQIAAITGTNGKTTTTALVGEIMKCFYSDVYVVGNIGTPYT---SVALDTKDES 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I+      RP ++ +  I P HL     +E  A  K  I +      
Sbjct: 174 VIVAEISSFQLETIQDF----RPQVSAVLNITPDHLDRHGTVEVYARTKESIGKNQTGDQ 229

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQG 278
            + LNY+D     +  +++A     +  F      D +L +     + S+M      +Q 
Sbjct: 230 VMVLNYEDPVTRNMAERANA----RVVFFSL----DHELEEGVYFKDGSFMLAENKTVQT 281

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E   + +G H  +N+L  + +   +    +   K +S F   E    R         
Sbjct: 282 ICTEADINLLGGHNYENILAAIAVSHYMGVPAEQIRKGVSGFKGVE---HRIEYVDTIKD 338

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  +    I  +++ +    G            G   ++ + D  E    
Sbjct: 339 VAYYNDSKGTNTDAAIKGIKAMNRPTFLIGG------------GYDKKAEYDDWIEAFDG 386

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
             +  + L G     +           + Y +T++    +     V GD V++    +S 
Sbjct: 387 -KVKELILLGATAEKIGKTAEAHGFSRIVYVDTLEEAVEYASKHAVSGDAVLLSPACASW 445

Query: 453 --------NSCGFYRLINLLLEE 467
                       F   +N L E 
Sbjct: 446 GMFPNYEVRGDRFKEYVNKLKER 468


>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
          Length = 444

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 116/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQSLAYQV----AECNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTP 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD   +    + H  GI    Y F + K    +        ++ +    +  
Sbjct: 208 DDAFIFWNDDPIIQR---ELHKYGIHGHYYPFAERKE---EGTAAYVEQDKVYFTEPIAF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      ++     +   +AL  F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVE---HRLEKVCRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + I +LG     G+   + + ++A+++  
Sbjct: 319 VDYINDSKATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++  G H   L D   +  + V   ++M             G+ V++
Sbjct: 367 KCTGLIY-MGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|254880788|ref|ZP_05253498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
 gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
          Length = 444

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 116/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQSLAYQV----AECNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTP 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD   +    + H  GI    Y F + K    +        ++ +    +  
Sbjct: 208 DDAFIFWNDDPIIQR---ELHKYGIHGHYYPFAERKE---EGTAAYVEQDKVYFTEPIAF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      ++     +   +AL  F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVE---HRLEKVCRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + I +LG     G+   + + ++A+++  
Sbjct: 319 VDYINDSKATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++  G H   L D   +  + V   ++M             G+ V++
Sbjct: 367 KCTGLIY-MGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|220920537|ref|YP_002495838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium nodulans ORS 2060]
 gi|219945143|gb|ACL55535.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           nodulans ORS 2060]
          Length = 460

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 122/387 (31%), Gaps = 40/387 (10%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           ++G   D  +F    +  G           V    S  +PV G  ++          A  
Sbjct: 58  LRGA--DWAEFAALLLAPGVPFTHPEPHWTVKRAASAGVPVIGDIELF-----CRERATT 110

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
              A  +AITG+ GK+TT  ++   L          G+    I         P      +
Sbjct: 111 APDAPFVAITGTNGKSTTTALIAHVLRETGHDVQMGGNIGTAILS----LAPPAPGRVHV 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    +     LT  ++P + V+  I P HL     +   A  K  +      +    
Sbjct: 167 IEMSSFQID----LTPTLKPSVGVLLNITPDHLDRHGDMANYAGIKERLIA---SSDHAV 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD +   + A+ HA  +  ++    +       R        +  E       +  +
Sbjct: 220 IGVDDDYTRAIAAR-HAGPLTRVHVGETAPGPGILARHGVLIDGCT--EPPSPVADLTGI 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN  +   +   L    D   +AL  F    G   R      +G    I++
Sbjct: 277 PSLRGSHNWQNAGIAYAVARALGVAPDAFAQALRSF---PGLPHRMEEVGRRGSVLFIND 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S + A++   ++     G+         E G  S      LA       I+H 
Sbjct: 334 SKATNADSTEKALAAFPRVHWILGGK-------PKEGGIAS------LAPYFPR--IAHA 378

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMD 431
           +L G    A    L     V    T++
Sbjct: 379 YLIGAASDAFAATLEGHAPVSRCGTLE 405


>gi|218768199|ref|YP_002342711.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis Z2491]
 gi|121052207|emb|CAM08530.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis Z2491]
 gi|319410446|emb|CBY90806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase (murein peptide ligase)
           [Neisseria meningitidis WUE 2594]
          Length = 458

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK  
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKAAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGADWDVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|261392542|emb|CAX50097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           8013]
          Length = 458

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 126/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK+ 
Sbjct: 227 LIICNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEVNADGSFDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +  D+ TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKAAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGADWDVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|307718045|ref|YP_003873577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
 gi|306531770|gb|ADN01304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
          Length = 459

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 16/297 (5%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKE 124
           + +       + I    V      L+                ++ I+A+TGS GK+TT  
Sbjct: 69  HREEDFLEADVVIKNPAVPRTSRFLSLARHVETDISLFLKACRSPILAVTGSKGKSTTAS 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   LS+        G+       PLT  R   +    + EL    LG++        P
Sbjct: 129 ALHHILSAAFPGARLGGNITTS---PLTFLRELSEESPVVLELSSWQLGDLGGRISFT-P 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A +T I P H + ++ +E     K  I    + + T      D +   + A + A  +
Sbjct: 185 QVAALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTFLYPASDPWGRWMAANTPATAL 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                F +   +      +    E  +++   +   +       G H   N+L+   +  
Sbjct: 245 P---FFEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLPERLLVPGAHNRLNLLLAGAMAY 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               D       LS F    G   R      +G  +  ++S    P ++ AA+S   
Sbjct: 302 TFGTDPALIRTRLSSF---PGIPHRLELVREKGGVSFYNDSAATIPDAVLAAVSAFE 355


>gi|296314257|ref|ZP_06864198.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839054|gb|EFH22992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria polysaccharea ATCC 43768]
          Length = 458

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 126/379 (33%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 103 HRHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSK 162

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  AV+  +   H   F+ +  I +    +   +
Sbjct: 163 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTV 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG          +  + +     +V L 
Sbjct: 223 PSEGLIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEVNADGSFDVLLD 274

Query: 278 GKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK    V    +G H   N L  +        D+ TA +AL  F   +   +R       
Sbjct: 275 GKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALGAFKNVK---RRMEIKGTA 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 332 NGITVYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAAL---- 383

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL +   V+    G      +   P    +H  +  D     I  +   GD ++V 
Sbjct: 384 --PASLKDADQVFCYAGGVDWDVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM 441

Query: 451 SSNSCGFY----RLINLLL 465
            SN  GF     +L++ L 
Sbjct: 442 -SNG-GFGGIHTKLLDALR 458


>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
 gi|158512568|sp|A1AU63|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
          Length = 446

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 116/347 (33%), Gaps = 38/347 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A ++AITG+ GKTT   +               G+  N +   + L      V+  + 
Sbjct: 106 IQAPLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPL---IELLESAEPVERVVA 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L  IR      RP +A +  ++  HL  ++   E   AK  IFE         +
Sbjct: 163 EISSFQLEWIR----AFRPAVAALLNLSEDHLDRYASYREYIEAKLRIFENQTADDYAVV 218

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N DD          H+ G++  ++ F + +  D           +  +  +  G+     
Sbjct: 219 NADDELVME-----HSRGLRACLFPFSRKQELD-----EGIFHREGLIVWRHNGREERFP 268

Query: 285 HHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             G    G H  +N++  L    +L      ++  +  F        R            
Sbjct: 269 TAGFRLQGVHNLENIMAALACSLLLECRPTESLACVREFEALH---HRMEFVRELNGVRW 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S++ A+     I+    G+         + G  S      L+ ++    +
Sbjct: 326 YEDSKATNVGSVEKALESFDAITLIAGGK--------DKGGSYSP-----LSRLVRER-V 371

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            H+ L G     +++ L        + T++            G  V+
Sbjct: 372 RHLVLIGEAAGRMQEELGTLTDTRRAATLEEAVSLAAELTAPGGTVL 418


>gi|189347972|ref|YP_001944501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlorobium
           limicola DSM 245]
 gi|226711892|sp|B3EIL0|MURD_CHLL2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189342119|gb|ACD91522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium limicola
           DSM 245]
          Length = 465

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 118/353 (33%), Gaps = 31/353 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIF 165
           KA I  ITG+ GKTTT  +L     +             +IGVP +   +     D  + 
Sbjct: 104 KARIAGITGTDGKTTTSTLLHRIAEADGMKNDYRAFSVGNIGVPFSSLVLDMAPADLAVV 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L          RP ++VIT I P HL      ++  A+AK  I+     + T+ 
Sbjct: 164 ELSSYQLEG----CETFRPDVSVITNITPDHLDRYNGDMQLYAAAKFRIYASQRASDTLV 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK--------SKNADFQLRKWKQCSEQSWMEVQL 276
            N+DD       + +       I  FG         S+ A F      +      +    
Sbjct: 220 YNFDDPLLRAQFSGNGRGFPFRIVPFGIGNDVPGSGSEEAFFYDEGMIRHLTAKGISEVF 279

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+   +     G H   N L  L   + L  +   A KA+S F   E    R     + 
Sbjct: 280 SGEDF-LKSSFRGRHNIYNALAALAAAAALGIEESVARKAISGFSGVE---HRQEFVCSL 335

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  ++  A+  +        G  + + G   +  + +  F  D+    
Sbjct: 336 DGVEWINDSKATNVNALLQALDAV-------PGSIVLIAGGRDKGNDYTVLF--DVVR-- 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  V   G     +            ++T+D      + S   G  V+ 
Sbjct: 385 --RKVVTVIAIGEAREKILQVFEGITRTAGADTLDDAVALARESAEKGQTVLF 435


>gi|325275007|ref|ZP_08141002.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas sp. TJI-51]
 gi|324099856|gb|EGB97707.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas sp. TJI-51]
          Length = 312

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 31/269 (11%)

Query: 56  FILHAVQKGAGL-VVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ H  +  A   V+V +  +              IPV    ++L  L +          
Sbjct: 65  FVGHRAENAATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------- 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  +L    ++              IG  LT A     +    + +
Sbjct: 117 -HGVAVAGTHGKTTTTSLLASVFAAGGLDP------TFVIGGRLTAAGTNAQLGTSRYLI 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             +   +  FL   ++P +AV+T I   H++ +     ++     E    L   G   + 
Sbjct: 170 AEADESDASFL--HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMC 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            DD     +  +      +   ++G S+ AD +    +Q   Q+   V  +  + ++V  
Sbjct: 228 LDDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLDVSV 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +  G H   N L T+ I +      +  +
Sbjct: 284 NMPGNHNVLNALATIAIATDEGITDEAIV 312


>gi|295094721|emb|CBK83812.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 404

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 98/300 (32%), Gaps = 47/300 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---------------NNHIGVPLT 152
             +I +TG+ GKTT   M+   L    +    +G+                   I +   
Sbjct: 1   MKVIGVTGTKGKTTVACMIKSMLDRWGRRTGLVGTIEIDDCIRKIPSVNTTPGTIYLHRK 60

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASA 209
           LA M  +  ++ + E+     G +      V   I V T +AP H+         E    
Sbjct: 61  LADMVANGAEYCVMEVSS--QGLMHGRVSGVEFDICVYTNLAPDHIGRNEHRTFAEYGRW 118

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F    K  T  +N DD +   + A++   G + +Y   ++  A         C   
Sbjct: 119 KRSLFS---KCKTAVINADDMYSGCIAAEAVNAGAEVVYYGVRNHTA---AGDGNVCMAG 172

Query: 270 SWMEV-------------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +   +             +  G+S  +     G     N L  +    I+   ++    +
Sbjct: 173 AIHRLILHRVMGIGYECERTDGESTYMTVGIPGEFNVYNSLAAVTTCGIIGIPMEVMQDS 232

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            S      GR +          +  I   Y  N  S++  ++ L Q  P    R I + G
Sbjct: 233 QSDMK-VRGRLEPVEIP----GYARIFIDYAHNAVSLENVLTTLRQYRPK---RLICLFG 284


>gi|260576888|ref|ZP_05844871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
 gi|259020925|gb|EEW24238.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
          Length = 466

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 120/373 (32%), Gaps = 39/373 (10%)

Query: 86  FGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD+ +G   +           +   ++ +TGS GK+TT  ++   L    +     G+
Sbjct: 95  VPVDNDIGLFFRSFATPDWDNFETAPRVVCVTGSNGKSTTTALIHHILEVAGRPTQMAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +          VD +  + EL        R LT    P +AV T ++P HL   +G
Sbjct: 155 IGRGVLDIDP----AVDGEVVVLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHNG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
           +    +AK  +F          +  D+     L  + +       +           +  
Sbjct: 207 MGGYFAAKRRLFAEGGPD-RAVIGVDEVEGRYLAGQLAEGAADDRVIRISSGTK--LEEF 263

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W   + + ++    +GK      +  V    G H  QN          L        +A
Sbjct: 264 AWSVFARKGFLAEWRRGKQVASIDLRGVAGLPGAHNHQNACAAYAACRSLGVGPKLIEQA 323

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
              FH   G   R +    +     +++S   N  S   A+    +I      R IA  G
Sbjct: 324 ---FHSFAGLPHRSQTVGEKAGVRFVNDSKATNVDSAAKALQAFPRI------RWIA--G 372

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            M + G + ++    L  V         +L G         L  +      ETM+     
Sbjct: 373 GMGKDGGI-KALVPHLGSVAKA------YLIGHSARDFALEL-GATPYEICETMERAVAA 424

Query: 437 IQSSLVDGDVVVV 449
                  G+VV++
Sbjct: 425 ATRDAQAGEVVLL 437


>gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
 gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
          Length = 427

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 112/363 (30%), Gaps = 67/363 (18%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F   A++KGA                   +  V++    L       ++     II IT
Sbjct: 31  NFASDALEKGA------------------KIIDVEECKKLL-------KIDENIKIIGIT 65

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVD 159
           G+ GKTTT   +   L  +       G+    I                  L   ++   
Sbjct: 66  GTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQLATQ 125

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                F + +S    ++     ++    + T I   HL      E   +AK   F     
Sbjct: 126 KKCDFFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFF---TD 182

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               F+N D      L  K     ++  +++G    + +Q++ +    +     V L+ +
Sbjct: 183 ESLKFINKD-----TLMIK---FNVRNAFTYGIENPSLYQVKAYSL-EDGISAIVALKDQ 233

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  +    +G     N+L     V+ L    +    KA+S F    G     R       
Sbjct: 234 SFHIDSPLLGLFNLYNLLAASACVNELVKPNLKDLEKAISGFGGVCG-----RVEQVANG 288

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +    +   P  ++  +  L         + I V G   +  +  +     + E  + 
Sbjct: 289 VIV---DFAHTPDGIEKVLDTLK------NKKLIVVFGAGGDRDKTKRPLMGKIVEHFAK 339

Query: 399 YNI 401
             I
Sbjct: 340 IAI 342


>gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 300

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 94/252 (37%), Gaps = 25/252 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ L             ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT ++L      + +T A +G+  N +   +            +               
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++      G   +
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS-THHHGQAIV 239

Query: 226 NYDDSFFELLKA 237
           N DD       A
Sbjct: 240 NADDEVGRRWLA 251


>gi|317014909|gb|ADU82345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Gambia94/24]
          Length = 447

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 139/406 (34%), Gaps = 58/406 (14%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +     P+    + L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K 
Sbjct: 37  PLNEKYAPLIAEKN-LAILDSNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKK 95

Query: 137 YACIGSYNNHIGVPL---------TLARMPVD--------VDFGIFELGMSHLGEIRFLT 179
            A +G+    I             TL  +  D         ++ I E+    + + R   
Sbjct: 96  TALLGTRGFFINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIAQKRI-- 153

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKA 237
             +   + ++T I   HL     +E    AK   F   +  G   +N D  ++ F  + A
Sbjct: 154 AGLDFALKILTNITSDHLDFHKSLENYRDAKNSFF---KDEGLKVINRDETNALFNPINA 210

Query: 238 KSHALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +++AL  K    + +F  + +          C +Q   +  L+ ++  +    +G +   
Sbjct: 211 RTYALDKKAHLNVQAFSLNPS-----ISASLCYQQDLRDPNLK-ETALIHSPLLGRYNLY 264

Query: 295 NMLM-TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           N+L   LG+  +    ++T    L  F+  +GR +            L+   +      M
Sbjct: 265 NILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGM 318

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
           +               +  A+ G     G+  ++    +  + S Y    +  S      
Sbjct: 319 QQVFESFKNQ------KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSE 369

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                +  +   +  S  V   +      L    +L D +V+++  
Sbjct: 370 NEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILG 415


>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 452

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 120/356 (33%), Gaps = 41/356 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD--V 160
            L     + AITGS GKTTT   +T  L +     A  G+         ++AR+  +   
Sbjct: 99  YLPEDTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGNVGF------SMARLVAEDPH 152

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEK 219
            + + E+    L      T+   P+++V+  I P HL       E  A +K  I + L K
Sbjct: 153 KYYVVEMSSFQLDG----TYKFHPNVSVLLNITPDHLDRYKHKFELYALSKMRITQQLGK 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-----NADFQLRKWKQCSEQSWMEV 274
             +     +D+F +    +         +S   S       +D +    +     S   +
Sbjct: 209 GDSFVYWEEDAFIKKYLEQHSMECTLLPFSLQTSGAKALYESDKETLHIEAQHNLSAFSI 268

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  +     +G H   N + +  +        +   KAL  F        R     
Sbjct: 269 P------KRDLALVGKHNLLNAMASALVAREFGVSNEYLGKALRDFKNVP---HRIEYVA 319

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S   N  S   A+    Q +P      + +LG     G    + + ++ E
Sbjct: 320 EIDGVRYINDSKATNIQSTFYALEA--QTTP-----VVLILG-----GTDKGNNYSEI-E 366

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L     +   G     L  A    I  +  + +MD      Q     GDVV++
Sbjct: 367 DVVLSKCRALIFMGIDNDKLHRAFDGKIDQIRDARSMDECLTHAQELAQSGDVVLL 422


>gi|261400231|ref|ZP_05986356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ATCC 23970]
 gi|269210030|gb|EEZ76485.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ATCC 23970]
          Length = 458

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 130/379 (34%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    + GV   L + P       
Sbjct: 103 HRHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGIPENFGVSARLPQTPRQDPNSQ 162

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  AV+  +   H   F+ +  I +    +   +
Sbjct: 163 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTV 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG         +  +  ++ S  +V L 
Sbjct: 223 PSEGLIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLD 274

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK+   V    +G H   N L  +        D+ TA +AL  F   +   +R       
Sbjct: 275 GKTAGRVKWDLMGRHNRMNALAVIAAARHAGVDIRTACEALGAFKNVK---RRMEIKGTA 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 332 NGITVYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKAAL---- 383

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL     V+    G      +  +P    +H  +  D     I  +   GD ++V 
Sbjct: 384 --PASLKEADQVFCYAGGVDWDVAEALVPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM 441

Query: 451 SSNSCGF----YRLINLLL 465
            SN  GF     +L++ L 
Sbjct: 442 -SNG-GFGGIHGKLLDALK 458


>gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
 gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
          Length = 441

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 121/345 (35%), Gaps = 38/345 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    +IAITGS GK+T  ++  +   +        G+        L L   P D    +
Sbjct: 107 QVDKPVIAITGSNGKSTVTDLAGVVAKAAGLQVGVGGNIGVP---ALELLEQPAD--LYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +    A    ++  H+  + G+E    AK  IFE  E      
Sbjct: 162 LELSSFQL----ETTSSLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEHAES---CI 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N  D      KA         +  F  +    F ++  +         + +        
Sbjct: 215 VNAQD------KATYPEHFKGELVEFSLTDKTQFSVQVQQNREYLCQDNLPIL---ATDE 265

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L ++  +  DV   +   S      G   R +   +      +++
Sbjct: 266 LTLVGRHNVANALVVLALLDCVGIDVSQGL---SALKSYNGLTHRCQIVADNHGVKWVND 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L+       G+   ++G + +  + S     +LA VL+  N+  +
Sbjct: 323 SKATNVASTLAALSGLT-----LTGKLYLLVGGVGKGADFS-----ELAPVLAKLNV-QL 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G          P +    +   M  +  + +  L  GD+V++
Sbjct: 372 CCFGEDGAQFMALHPSAKQFTH---MQEIVEWAKPQLTTGDMVLL 413


>gi|326693779|ref|ZP_08230784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           argentinum KCTC 3773]
          Length = 448

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 37/352 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A    +  +IA+TGS GKTTT  ++   L +  +     G+      V   +A +  D
Sbjct: 102 AVALSSFEGRLIAVTGSNGKTTTTSLIREMLLADGQRVTTAGNIGT--PVSEVVADLTAD 159

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L         ++P IA+IT I   HL      E+  +AK ++ +    
Sbjct: 160 -DTLLLELSSFQLMG----VPDIQPDIALITNIFANHLDYHGTREQYVAAKFQLTQNQTV 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             T+ LN D        A + A     +  F ++++        +  +    + +  Q  
Sbjct: 215 AQTLVLNADSPDTAQFTADTAA----QVVPFSRTQSGH------RVAATAGNLVIDDQVV 264

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H  +N+L  + +  +   + +   + L+ F        R          
Sbjct: 265 MPLTAIKLVGPHNLENILAAVTVAKLAGVENEAIRQVLASFGGVA---HRLEYLFTDQAV 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SL 398
              ++S   +  + + A+    Q +          L    + G+       DL  +L ++
Sbjct: 322 MYYNDSKATDIEATQTALDSFDQPT--------IWLAGGLDRGD-------DLTRLLPNM 366

Query: 399 YNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  V   G      +  A    + V   + +        +    GDVV++
Sbjct: 367 THVKTVVAFGETQQKVVAVAKAAGLPVQTVDDVTAAARLAVTLAQAGDVVLL 418


>gi|317046895|ref|YP_004114543.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
 gi|316948512|gb|ADU67987.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
          Length = 438

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---ALSLLKSPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAR---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD     ++            SFG        +  +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDGMTMPVRG-----ADTRCVSFGID------IGDYHLNRQQGSTWLRVKGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +++KAL+ F    G   R++         
Sbjct: 258 NTDEMKLVGQHNYTNALAALALADAVNIPRASSLKALTTFT---GLPHRFQLVHEAHGIR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  +   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVKGTLWLLLGGDGKSADFSP-----LARYVQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G    AL    P       +ET+      I S    GD+V++
Sbjct: 365 V-RLFCFGRDGDALAALRPE--IATRTETLQQAMAQIASQAQAGDMVLL 410


>gi|237729386|ref|ZP_04559867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
 gi|226909115|gb|EEH95033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
          Length = 438

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 135/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDERELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGINMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++  LN     
Sbjct: 258 NVKEMTLTGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLVLNHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +  + L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P      ++ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--VAEHTETMEQAMRLLAPRVKPGDMVLL 410


>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 458

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 134/372 (36%), Gaps = 39/372 (10%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V      +  + ++ +A R      I+AITG+ GKTTT  ++   L    +     G+  
Sbjct: 87  VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIG 146

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                 +       +    + E+    L  I++     +P +  I  I P HL+    +E
Sbjct: 147 LPFIDTI---ETSSEDTIFVLEISSFQLETIKYF----KPKVGCILNITPDHLNRHLTME 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AK  IFE +++ G   LNYD++    L   +       +  F K+K    Q     
Sbjct: 200 NYTKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKG----NVIVFSKTKT---QFENV- 251

Query: 265 QCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              E   +    +GK+ EV+        G H  +N L  +        + DT  + L  F
Sbjct: 252 VFVENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPFGIEKDTIEQVLKTF 311

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              E    R             ++S   N  + + A++             I + G    
Sbjct: 312 RGVE---HRIEFVAEINGIKFYNDSKGTNTDAAEKALNAFEN-------PIILIAGG--- 358

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             +  +SF    A +++   +  V+L G     +   L + I     E +  L   ++ S
Sbjct: 359 -YDKGESF-EKFASLVAK-KVKKVFLLGQTKQKIASELEK-IGYKNFELVSTLKEAVRKS 414

Query: 441 ---LVDGDVVVV 449
                +GD+V++
Sbjct: 415 FECAQNGDIVLL 426


>gi|317472438|ref|ZP_07931762.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900082|gb|EFV22072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
          Length = 454

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 128/383 (33%), Gaps = 48/383 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+  I AITG+ GKTTT  ++   +         +G+         ++A    D  
Sbjct: 103 AYQVSRGQIAAITGTNGKTTTTALVGEIMKCFYSDVYVVGNIGTPYT---SVALDTKDES 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I+       P ++ +  I P HL     +E  A  K  I +      
Sbjct: 160 IIVAEISSFQLETIQDFC----PKVSAVLNITPDHLDRHGTVEVYAKTKESIGKNQTGDQ 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQG 278
            + LNY+D     +  +++A     +  F      D +L +     + S+M      +Q 
Sbjct: 216 VMVLNYEDPVTRNMAERANA----RVVFFSL----DHELEEGVYFKDGSFMLAENKTVQT 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E   + +G H  +N+L  + +   +    +   K +S F   E    R         
Sbjct: 268 ICTEADINLLGGHNYENILAAIAVSHYMGVPAEQIRKGVSGFKGVE---HRIEYVDTIKD 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  +    I  +++ +    G            G   ++ + D  E    
Sbjct: 325 VAYYNDSKGTNTDAAIKGIKAMNRPTFLIGG------------GYDKKAEYDDWIEAFDG 372

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
             +  + L G     +           + Y +T++    +     V GD V++    +S 
Sbjct: 373 -KVKELILLGATAEKIGKTAEAHGFSRIVYVDTLEEAVEYASKHAVSGDAVLLSPACASW 431

Query: 453 --------NSCGFYRLINLLLEE 467
                       F   +N L E 
Sbjct: 432 GMFPNYEVRGDRFKEYVNKLKER 454


>gi|271502044|ref|YP_003335070.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
 gi|270345599|gb|ACZ78364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
          Length = 437

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGQMAHAAGWAVGVGGNIGVP-----ALELLKQESQLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +    A I  +   H + +  G+++  +AK  I+E  +    
Sbjct: 155 VLELSSFQL----ETTHSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAK---V 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V+ +     
Sbjct: 208 CIVNADDALTMPVRGADA-----RCLSFGVDVG-DYHLNRQQ---GETWLRVKGERVLNT 258

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ +L +     +
Sbjct: 259 REIKLVGQHNYTNALAALALADAVGIPRSSALTALTTFT---GLPHRFQLSLERNGVRWV 315

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L       +G    +LG   +  + S      L   L    I 
Sbjct: 316 NDSKATNVGSTEAALSGL-----QVDGTLHLLLGGDGKSADFSP-----LLRYLQGDRI- 364

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       ++TM+     I S    GD+V++
Sbjct: 365 RLYCFGRDGGQLAALRPE--IAQQTDTMEQAMRLIASRTQPGDMVLL 409


>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|38257960|sp|Q87WY3|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 448

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 130/367 (35%), Gaps = 31/367 (8%)

Query: 84  PVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           P        GA L+         +KA +IAITGS  K+T   ++    ++  K  A  G+
Sbjct: 84  PALQQAHARGAKLSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGN 143

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                     L  +  DV+  + EL    L      T  +   +A +  I+  H+  +SG
Sbjct: 144 LGTP-----ALDLLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSG 194

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +     AK  IF G  +   + +N  D+    L  +         ++FG +K  DF    
Sbjct: 195 LPAYHLAKHRIFRGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFG 245

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            ++ + + ++  Q +           G H   N L  L +   +    D  + +L  F  
Sbjct: 246 LREENGEKFLAFQFENLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLSSLREFTG 305

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E R +  R    +      ++S   N  +  AAI  L        G+ + + G   +  
Sbjct: 306 LEHRCQWLR---ERNGVDYYNDSKATNVGAALAAIEGLGS---DIGGKLVLIAGGDGKGA 359

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + S      +A+           L G     +  AL  ++ +   +T+            
Sbjct: 360 DFS-GLRAPVAKYCRAA-----VLLGRDAELIAQALGDAVPLIRVDTVQAAAERSAELAQ 413

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 414 RGDAVLL 420


>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
          Length = 448

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 REAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-----ALDLLADDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   +
Sbjct: 160 VLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q        
Sbjct: 213 VVNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFGKLLPVG 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + AL  F     R +  R    +   +  D
Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWVR---ERQGVSYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G         +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++ +    T+D           +GD V++
Sbjct: 375 VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLL 420


>gi|152976274|ref|YP_001375791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189082871|sp|A7GRN8|MURD_BACCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152025026|gb|ABS22796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 451

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 34/350 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  I ITGS GKTTT  +    L   +K  A  G+      V   +A+     +
Sbjct: 106 AYRISEAPFIGITGSNGKTTTTMLTFEMLKEGEKHPAIAGNIGT---VACEVAQAAKANE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA IF+      
Sbjct: 163 VLVTELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    I    +      A  +        E+    V+++    
Sbjct: 219 YSVINADDADVMELSANSKGQKILFSTTKEIEDGACIKENALYFKGEKV---VEIKD--- 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +  +  L  F   + R +      N+ F+  
Sbjct: 273 ---IVLPGKHNLENILAAMSIAKLLGVANEAIVAVLKRFTGVKHRLEYVTTIHNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +          + +L    + G                 ++
Sbjct: 328 -NDSKATNILATEKALSAFTS--------PVILLAGGLDRGNEFDDL-----IPYFEQHV 373

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +     ++       +   DGDV+++
Sbjct: 374 KAIVTYGQTAPKLVHAAEKAGLAIIEAVHHLEEAVERAYAHSADGDVILL 423


>gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 448

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 128/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+       P  L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLG-----PPALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKFLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q             G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFDNLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      ++S   N  +  AAI  L       +G+ + + G   +  + S      +A+
Sbjct: 315 ERNGVDYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAQ 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 YCRAA-----VLLGRDAELIAQALGDAVPLIRVDTLQAAAERSAELAQHGDAVLL 420


>gi|299147129|ref|ZP_07040196.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_23]
 gi|298515014|gb|EFI38896.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_23]
          Length = 458

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/411 (13%), Positives = 146/411 (35%), Gaps = 46/411 (11%)

Query: 55  DFILHAVQ-KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           D I  A + K + LV+    +      L   V+  ++      +  V   +   +  + +
Sbjct: 61  DLIPEACKDKESTLVIYTPAVPQEHEEL---VYFRNNGFEIQKRAQVLGTITHSSKGLCV 117

Query: 114 TGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTTT  M          +  A +G  + + G  L L++        + E      
Sbjct: 118 AGTHGKTTTSTMTAHLFHQSHVECTAFLGGISKNYGTNLLLSQASPYT---VIEA----- 169

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E     H + P++ VIT+  P HL  +   +    +       ++  G + +       
Sbjct: 170 DEFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------R 223

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-H 291
           + +  +        +Y++ + +  DF     +  + + +++       +  +  GI    
Sbjct: 224 KGISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGIPVSI 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N +  + +  +     +   + ++ F   +   +R+   L       + + Y  +P+
Sbjct: 283 NIENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKLKNDRIVFLSD-YAHHPS 338

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
            +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y   
Sbjct: 339 EIKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPAR 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
              + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 395 EAPIPGVTSKLIYDNLRPGIEKSMCK-KEEILNILKDKNIEVLITLGAGDI 444


>gi|295688559|ref|YP_003592252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
 gi|295430462|gb|ADG09634.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
          Length = 470

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 112/328 (34%), Gaps = 17/328 (5%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR  A  E F  +     D   F   A+    G+ + +     ++         +   + 
Sbjct: 44  SREAAAAEGFPVVDLETADWRQFA--ALMLSPGVPLTHPKPHWTVQKAKAAGVEILGDIE 101

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
              +   AA +  +  IIAITG+ GK+TT  ++    +S  +     G+    +      
Sbjct: 102 LFARTVAAAPVHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRIGGNIGQGVLG---- 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                     + EL    L     LT  + P   V+  I+P HL    G++   +AK  I
Sbjct: 158 LEDMHGGAVYVLELSSYQLD----LTSSLHPDAVVLLNISPDHLDRHGGMDGYIAAKRRI 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSW 271
           F    K  T  +  DD + + +  +  A   +TI+  S GK+        +         
Sbjct: 214 FLNQGKGDTAIIGVDDPWCQQICTEITAANRRTIWPISAGKAMGRGVYALQGVLYDATGE 273

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V++    +       G H  QN          +   +  A+  L  F    G   R  
Sbjct: 274 RVVEVAD--LLRARSLPGRHNWQNAAAAYAAARAIGIPMQDAVDGLMTF---PGLAHRME 328

Query: 332 CALNQGFFTLIDESYNANPASMKAAISV 359
                G    +++S   N  + + A+S 
Sbjct: 329 TVGKIGKVRFVNDSKATNADAARQAMSS 356


>gi|119632730|gb|ABL84372.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis]
          Length = 375

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 38/294 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T + + G+ GKT+T  +L   + +I  T   IG             R  
Sbjct: 93  HEFLGEFMKGFTSLGVAGAHGKTSTTGLLAHVMRNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+ +E++ +A  +  + +
Sbjct: 144 ANAQYFVFE-----SDEYERHFAPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +    +F+  +D     + A +       IY +G   N DF     K  +  S  +V+  
Sbjct: 199 KN--ALFVFGEDEQLRRITANA------PIYYYGLEDNNDFVAYDLKPSTSGSQFKVRHG 250

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + + E      G H   N    +  + I   D+    + L  F   +   +R+   +  
Sbjct: 251 EEELGEFQIPTFGKHNVMNATAVIANLYIAGFDLQLVAEHLKTFGGVK---RRFTEKIVN 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380
              T+I + +  +P  + A I    Q            PH   R IA+L +  +
Sbjct: 308 D--TVIIDDFAHHPTEIIATIDAARQKYPSKELVAIFQPHTFTRTIALLDEFAD 359


>gi|238791171|ref|ZP_04634810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
 gi|238729304|gb|EEQ20819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
          Length = 438

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +        G+        LTL R   +    
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP---ALTLLR--QENQLV 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H   +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFT---GLSHRFQLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  +       EG    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALDGI-----QVEGTLHLLLGGDGKSADFS-----GLTRFLQGDH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  V+  G     L +  P    +  +ETM+   + +  SL  GD+V++
Sbjct: 365 I-KVYCFGRDGEQLAELRPEVSQL--TETMEQAMVLLAKSLAPGDMVLL 410


>gi|91776858|ref|YP_546614.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
 gi|91710845|gb|ABE50773.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
          Length = 460

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 133/387 (34%), Gaps = 40/387 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLAR 155
            L  A +   +  ++A+ G+ GKTTT  ML   L          IG    + GV   L  
Sbjct: 98  HLLYAKQGEPEKWVLAVAGTHGKTTTTSMLAWILEYGGLAPGFLIGGVPENFGVSARLPG 157

Query: 156 MPVDVDFGI-----FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIAS 208
           +P   D G+      E            +  V  RP   ++  +   H   F  +E I +
Sbjct: 158 VPRQDDKGVSPFFVIEADEYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFPDLEAIET 217

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
               +   +   G +  N  +     +  +        +  FG     D+Q         
Sbjct: 218 QFHHLVRTVPSNGLVVANGKEGSLRRVIKRG---CWTPVEYFGT----DWQATDVDAAG- 269

Query: 269 QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                V+ QGK+   V    +G H   N L  L         +D  I ALS F   +   
Sbjct: 270 --SFTVRFQGKAYGRVQWQLLGEHNRMNALAALAAARHAGVAIDAGIVALSQFRSVK--- 324

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGE 383
           +R          T+ D+ +  +P ++   ++ L      G+ R +AVL      M  +G 
Sbjct: 325 RRMEVRGTANGITVYDD-FAHHPTAIATTVAGLR--DKVGKARILAVLEPRSNTMK-LGV 380

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           +  +    LA+         V+  G H+   A     P        ++M  L   I +  
Sbjct: 381 MKDALPGSLAD------ADLVFCYGEHLGWDAASALQPIQHKAAAFDSMSVLIEAIAAEA 434

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             GD ++V  SN  GF  +   LLE  
Sbjct: 435 QPGDHILVM-SNG-GFGGIHERLLERL 459


>gi|301161366|emb|CBW20906.1| putative UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           fragilis 638R]
          Length = 464

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 140/409 (34%), Gaps = 42/409 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +  A  +VV T  V    +     +  D+      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKATTLVVLTPAVPQEHAEL--TYFRDNGFEIQKRAQVLGTITRSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M             C            T   +     + + E       E
Sbjct: 119 GTHGKTTTSTMTAHLFHQS--HVGCTAFLGGISKNYGTNLLLSSTSPYTVIEA-----DE 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H + P+++VIT   P HL  +   +    +       ++  G + +       + 
Sbjct: 172 FDRSFHWLSPYMSVITATDPDHLDIYGTEQAYLKSFEHYTTLIQPGGALII------RKG 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMA 293
           +  +        +Y++ + +  DF     +  + + +++       ++ +  G+      
Sbjct: 226 ISLQPKVKEGVKMYTYSRDEG-DFHAENIRIGNGEIFIDFVGPDIRIDNIQLGVPVSINI 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +
Sbjct: 285 ENGVAAMALAHLNGVTPEEIKQGMASFRGVD---RRFDFKIKNNRIVFLSD-YAHHPSEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHV 404
           K ++  + ++  + + +  AV      +   ++ F+ D A+         ++ +Y     
Sbjct: 341 KQSVMSMREL--YRDKKITAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQ 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            + G     + D L   I     +  + +   +++       +L  GD+
Sbjct: 397 PIPGVSSRLIYDNLRPGIEKSMCK-KEEILDVLKAKHIEVLITLGAGDI 444


>gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 437

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 122/380 (32%), Gaps = 55/380 (14%)

Query: 80  SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++P     V+  +  L ++ +  R        AITG+ GKTT   ML   L   KK  
Sbjct: 73  KYTVPFVRYFVEHKVKILTEVEIGYRYAKGFHYGAITGTNGKTTITTMLYEMLKYNKK-- 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             I + N    +     +   +      EL    L  I        P ++V+  +AP HL
Sbjct: 131 -AIVAGNIGWPLSELALKYEAEEKDVALELSNFQLLGIEHFA----PSVSVVCNLAPDHL 185

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---- 253
                +E    +K  I++   K      N DD+               T+  F  +    
Sbjct: 186 DYMPSVESYYESKMRIYKNCTKDDWFLRNVDDATVLQYAQNIPC----TVIDFSLTRQDV 241

Query: 254 ----KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               K+    LR      E+S+              H +G +   N ++   +   L   
Sbjct: 242 DLYRKDGAVYLRDILLFEEKSF--------------HVVGDYNLSNAMIAACMAYKLGVS 287

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           V    KA++ F P E    R      +      ++S   N  ++ AA+S           
Sbjct: 288 VRDIQKAIASFQPVE---HRLEYIGEKNGVKFYNDSKATNTHAVTAALSSFESN------ 338

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             I +L    + G          A       +      G      ++      HVH  ET
Sbjct: 339 --IILLAGGHDKGISFDDLRQYDAR------VKLCVAFGETGPQFQEIFS---HVHVVET 387

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           M        ++  + D++++
Sbjct: 388 MQEALKEAIANSKEQDIILL 407


>gi|269958264|ref|YP_003328051.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
 gi|269848093|gb|ACZ48737.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
          Length = 472

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 118/360 (32%), Gaps = 33/360 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               I + GS GKT+T  M+   +             +  + +         +   G  E
Sbjct: 109 TRRTIVVAGSHGKTSTTGMIASIMEHAG--------MDPTVFIGGIAFSYNNNYKMGSGE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             +    E       +   +AV+T +   H   ++ +E +    ++    ++  G   + 
Sbjct: 161 WAVVEADESDSSFTALPCEVAVVTNLEWEHPDKYACLETLKGVFSDFLCNVKAGGAAVVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV--V 284
                   L +      +    ++G ++  D  +      S+ +  ++ + G  +     
Sbjct: 221 ------SGLSSVLGNNAVCGKTTYGLTEG-DLLVSNITYASDATVFDI-VDGTEVCHGVR 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L  +  V  L  D       L  F    G  +R+    +    T +D+
Sbjct: 273 LPVPGRHNVENALAAVAAVKRLGVDCSCIKSGLENFM---GVRRRFEVISSVRGVTFVDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAE-----VLS 397
            Y  +P  + A  +     +    GR I +L       +      F   +++     +  
Sbjct: 330 -YAHHPTEIDATRNTAKLFAA--GGRVIGILQPHRFTRVQHFFNDFTAAVSKFDHMILTD 386

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +Y      +SG   L +  A+       + ++  +  +   I +    GDVVV   + S 
Sbjct: 387 VYPAGEEVISGCESLDIVRAVKNLGFDRIVHASDVHTITDVISAVAGPGDVVVAMGAGSI 446


>gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
 gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 504

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 148/473 (31%), Gaps = 57/473 (12%)

Query: 20  GIVPQ-GFVNGISIDSRSIAPQEAF-FA-IKGPHYDGHDFILHAVQKGAGLVVVNTD--- 73
           G  P    +  I  DSR     + F  A   G      +FI +A    A L+++ TD   
Sbjct: 21  GKNPDSIEIEYIQSDSRKTNKNDIFCVADSIGSKKK--EFISNAK---ASLILLRTDSNV 75

Query: 74  -----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                 V +   + +      + L       +         I+A+TG+ GKT+   +L  
Sbjct: 76  LNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSKDLDIVAVTGTNGKTSLTNILFS 135

Query: 129 ALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFELGMSHLG 173
                      IG+                     + L L  M  +    +F    SH G
Sbjct: 136 LAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNLILKEMKEEGITTVFMEASSH-G 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDSF 231
                 + +     V T +   HL   S +E+   +K  +FE L+ +      L+Y    
Sbjct: 195 LKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSTFAVLDYSAPN 254

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGY 290
              L  K        +          +++       + +   + L G +  ++  + +G 
Sbjct: 255 GSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGTSYVLGLPGNQERKISTNLLGS 314

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N  +       +  D++    +L       G   R++   ++    +    Y   P
Sbjct: 315 FNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPG---RFQIIYSKDRSRMAVVDYAHTP 371

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++  I  +    P      I + G   +     +     +AE LS      V L+  +
Sbjct: 372 DALENIIRSVRDSQPKC---LITLFGCGGDRDRTKRPKMARIAEELS----DQVILTSDN 424

Query: 411 VL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSS--LVDGDVVVV--KS 451
                   + D +       +      +D     ++    L +G  ++V  K 
Sbjct: 425 PRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLVAGKG 477


>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
 gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
          Length = 445

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 96  FAGRYTDSKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGNSLALQV----AEDPH 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I +   K
Sbjct: 152 AVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTK 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++          K  +E + + ++    
Sbjct: 208 DDAFIFWNDDPIIAREIAKRHPEA--TLYPFAETHEN-----GVKGYTENNQVVIETANG 260

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     I+    +    +LS F   E    R    L  
Sbjct: 261 TFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE---HRLEKVLRV 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 318 RGVDYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEI-EEL 364

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + ++  + +M+            GD V++
Sbjct: 365 VNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 506

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 148/473 (31%), Gaps = 57/473 (12%)

Query: 20  GIVPQ-GFVNGISIDSRSIAPQEAF-FA-IKGPHYDGHDFILHAVQKGAGLVVVNTD--- 73
           G  P    +  I  DSR     + F  A   G      +FI +A    A L+++ TD   
Sbjct: 23  GKNPDSIEIEYIQSDSRKTNKNDIFCVADSIGSKKK--EFISNAK---ASLILLRTDSNV 77

Query: 74  -----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                 V +   + +      + L       +         I+A+TG+ GKT+   +L  
Sbjct: 78  LNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSKDLDIVAVTGTNGKTSLTNILFS 137

Query: 129 ALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFELGMSHLG 173
                      IG+                     + L L  M  +    +F    SH G
Sbjct: 138 LAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNLILKEMKEEGITTVFMEASSH-G 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDSF 231
                 + +     V T +   HL   S +E+   +K  +FE L+ +      L+Y    
Sbjct: 197 LKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSTFAVLDYSAPN 256

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGY 290
              L  K        +          +++       + +   + L G +  ++  + +G 
Sbjct: 257 GSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGTSYVLGLPGNQERKISTNLLGS 316

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N  +       +  D++    +L       G   R++   ++    +    Y   P
Sbjct: 317 FNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPG---RFQIIYSKDRSRMAVVDYAHTP 373

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++  I  +    P      I + G   +     +     +AE LS      V L+  +
Sbjct: 374 DALENIIRSVRDSQPKC---LITLFGCGGDRDRTKRPKMARIAEELS----DQVILTSDN 426

Query: 411 VL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSS--LVDGDVVVV--KS 451
                   + D +       +      +D     ++    L +G  ++V  K 
Sbjct: 427 PRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLVAGKG 479


>gi|227543135|ref|ZP_03973184.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181123|gb|EEI62095.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 491

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 135/445 (30%), Gaps = 68/445 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +   L IPV    D+L  L K             + + G+ GKT+T  M
Sbjct: 68  AAIPKDNPELVAARELGIPVIRRSDLLAELMK---------DRIQVLLAGTHGKTSTTSM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+       +        IG  L  A        G   +  +   +   L++   P 
Sbjct: 119 AVVAMQQAGLDPS------FAIGGQLNKAGTNAHDGTGRAFVAEADESDASLLSYA--PD 170

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGI 244
           +AV+T I P HL  F   E+           + + G  +    +D     L   +     
Sbjct: 171 VAVVTNIEPDHLDFFKTPEKYFEVFDSFAAVVAENGGELVACVEDEHALALARTAPG--- 227

Query: 245 KTIYSFGKSK--------NADFQLRKWKQCSEQS--WMEVQLQGKS---MEVVHHGIGYH 291
            T+Y +G +              + +    +  S   M V + G     +EV     G H
Sbjct: 228 -TVYGYGFAATLVENPTITPLVAVDEVTLTAYGSVATMHVHVPGGDVVPVEVTVRTPGTH 286

Query: 292 MAQNMLMTLGIVSIL------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL---- 341
           M  N    LG + +       T D  T  +  +      G  +R+          L    
Sbjct: 287 MVLNAAAALGAMFLASKRENGTFDATTLNQLAAGISDFTGVRRRFELKGTVERGPLAGVK 346

Query: 342 IDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  + A +      +         P  E   + V      +   +  F  + 
Sbjct: 347 VYDDYAHHPTEVAAVLRACKAKAVGEARAAGKPDDERPHVIVCFQ-PHLYSRTLKFAEEF 405

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                      VL +Y      + G     + + +  +    Y    +     +      
Sbjct: 406 GAALSLADHAIVLDIYGAREEPVEGVTGALVAEKIDSTGE--YVPGFNDAPAAVARVAKP 463

Query: 444 GDVVVVKSSNSCGF--YRLINLLLE 466
           GD+V+   + S       +I  L E
Sbjct: 464 GDIVLTMGAGSVTMLGAEIIRSLEE 488


>gi|227488530|ref|ZP_03918846.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091424|gb|EEI26736.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 491

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 134/445 (30%), Gaps = 68/445 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +   L IPV    D+L  L K             + + G+ GKT+T  M
Sbjct: 68  AAIPKDNPELVAARELGIPVIRRSDLLAELMK---------DRIQVLLAGTHGKTSTTSM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +A+       +        IG  L  A        G   +  +   +   L++   P 
Sbjct: 119 AVVAMQQAGLDPS------FAIGGQLNKAGTNAHDGTGRAFVAEADESDASLLSYA--PD 170

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGI 244
           +AV+T I P HL  F   E+           + + G  +    +D     L   +     
Sbjct: 171 VAVVTNIEPDHLDFFKTPEKYFEVFDSFAAVVAENGGELVACVEDEHALALARTAPG--- 227

Query: 245 KTIYSFGKSK--------NADFQLRKWKQCSEQS--WMEVQLQGKS---MEVVHHGIGYH 291
            T+Y +G +              + +    +  S   M V + G     +EV     G H
Sbjct: 228 -TVYGYGFAATLVENPTITPLVAVDEVTLTAYGSVATMHVHVPGGDVVPVEVTVRTPGTH 286

Query: 292 MAQNMLMTLGIVSIL------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL---- 341
           M  N    LG   +       T D  T  +  +      G  +R+          L    
Sbjct: 287 MVLNAAAALGATFLASNRENGTFDATTLNQLAAGISDFTGVRRRFELKGTVERGPLAGVK 346

Query: 342 IDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  + A +      +         P  E   + V      +   +  F  + 
Sbjct: 347 VYDDYAHHPTEVAAVLRACKAKAVGEARAAGKPDDERPHVIVCFQ-PHLYSRTLKFAEEF 405

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                      VL +Y      + G     + + +  +    Y    +     +      
Sbjct: 406 GAALSLADHAIVLDIYGAREEPVEGVTGALVAEKIDSTGE--YVPGFNDAPAAVARVAKP 463

Query: 444 GDVVVVKSSNSCGF--YRLINLLLE 466
           GD+V+   + S       +I  L E
Sbjct: 464 GDIVLTMGAGSVTMLGAEIIRSLEE 488


>gi|261838768|gb|ACX98534.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori 51]
          Length = 447

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 137/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFNFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEVSSHAIVQERIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHESIENYRDAKNSFF---KDEGLKVINRDETNALFNPINAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            I +F  + +    L   +     ++ E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NIQAFSLTPSISASLCYQQDLRNPNFKEIAL------MHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++  +  L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLEAIVPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    + EV S Y    V  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V++V  
Sbjct: 381 GISDSSKVVIEKDRKKAILNALENLKDDEVLLVLG 415


>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
 gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
          Length = 445

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 96  FAGRYTDSKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGNSLALQV----AEDPH 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I +   K
Sbjct: 152 AVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTK 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++          K  +E + + ++    
Sbjct: 208 DDAFIFWNDDPIIAREIAKRHPEA--TLYPFAETHEN-----GVKGYTENNQVVIETANG 260

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     I+    +    +LS F   E    R    L  
Sbjct: 261 TFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE---HRLEKVLRV 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 318 RGVDYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEI-EEL 364

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + ++  + +M+            GD V++
Sbjct: 365 VNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|259907207|ref|YP_002647563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|224962829|emb|CAX54288.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477016|emb|CAY72908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae DSM 12163]
          Length = 450

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 141/413 (34%), Gaps = 40/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDRWVIAVAGTHGKTTTAGMTAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E               V   P 
Sbjct: 124 ILQACGYEPGFVIGGVPGNFEVSANLGKSP----FFVIEADEYDCAFFDKRAKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   +  +  I      +   +   G I L   D+  + + +       +
Sbjct: 180 TLILNNLEFDHADIYDDLRAIQKQFHHLVRIVPGQGKIILPEHDANLKQMMSMGCWSEHE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +N  +Q++  K   + S  EV L G+ + EV    +G H  +N +M +    
Sbjct: 240 AV-----GENGCWQVK--KLSPDASCWEVMLDGERVAEVNWSLVGEHNMRNGMMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVKPEDAGRALNDFINAR---RRLELRGESNGIKVYDD-FAHHPTAIHATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
             G  R +AVL      M  MG         L           V+L   H     V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGISKDDLAPALGR------ADEVFLYQPHHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           DA  +    H+S  +D L   I      GD ++V  SN  GF  +   LL+  
Sbjct: 401 DACIQ--PAHWSADIDTLVEAIAKVAHPGDTILVM-SNG-GFGGIHQKLLDRL 449


>gi|218131847|ref|ZP_03460651.1| hypothetical protein BACEGG_03469 [Bacteroides eggerthii DSM 20697]
 gi|217986150|gb|EEC52489.1| hypothetical protein BACEGG_03469 [Bacteroides eggerthii DSM 20697]
          Length = 460

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 122/354 (34%), Gaps = 42/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  M       S     A +G  + + G  L L++        + E   
Sbjct: 115 LCVAGTHGKTTTSTMAAHLFHQSHIGCTAFLGGISKNYGTNLLLSQTSPYT---VIEA-- 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E     H + P+++VIT   P HL  +   E    +       ++  G + +    
Sbjct: 170 ---DEFDRSFHWLSPYMSVITATDPDHLDIYGTREAYLESFRHYTTLIQPGGALII---- 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
              + L  +        +Y++ + +  DF     +  + + +++       + ++     
Sbjct: 223 --RKGLALQPDVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIRLGVP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  
Sbjct: 280 IGINIENGVAAMALAHLNGVTDEEIKQGMASFRGVD---RRFDFKIKTSRLVFLSD-YAH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LY 399
           +PA +  ++  + ++  + + +  A+      +   ++ F+ D A+ LS         +Y
Sbjct: 336 HPAEIAQSVKSVREL--YKDKKITAIF--QPHLYTRTRDFYKDFADSLSLLDEVILTEIY 391

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
                 + G     + D L   I        + +   +          L  GD+
Sbjct: 392 PAREQPIPGVSSRLIYDNLRPGIEKCICP-KEDILNLLSKKSVEVLIVLGAGDL 444


>gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
 gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
          Length = 454

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 126/370 (34%), Gaps = 39/370 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV    ++L          R   +A  + ITG+ GK+T   ++ + L+ +  T    G+
Sbjct: 90  VPVINDIELL---------FRHSEQAAFVGITGTNGKSTVTTLVGLMLARLPGTTRTGGN 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             +       L+    DV+  + EL    L  I        P +A +  ++  HL  ++G
Sbjct: 141 LGD-----AALSLWQADVERYVLELSSFQLESIE----GFHPEVAALLNLSDDHLDRYNG 191

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQL 260
           ++    AKA IF+   +     +N DD   + ++          +  F   +       +
Sbjct: 192 LQGYLRAKARIFQRQTQRDRAVINADDPALQPVRDILGHPSAPRVVPFSTQQVIKGGVYV 251

Query: 261 RKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +  +    +   +  +   ++ E+   G       N        +I      +      V
Sbjct: 252 QDGQLLDHRQMTQPAIPIMAIAEMRIQG-----RCNHANAAAAAAIALEAGASHADVRQV 306

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G   R          T I++S   N  +      VL  I    EG  + + G   
Sbjct: 307 LRDFPGLPHRMAWVRRMDGVTYINDSKGTNVGA------VLEAIPSFPEG-VVLIAGGKA 359

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +  + S      L  +L  Y + H+ L G     +       + +  + +M+      Q 
Sbjct: 360 KKTDFSP-----LIPLLQKY-VRHLILIGTATEEMAAMFQAVVPLQRATSMEDAVQIAQQ 413

Query: 440 SLVDGDVVVV 449
               G+ V++
Sbjct: 414 VAQPGETVLL 423


>gi|330448820|ref|ZP_08312467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493011|dbj|GAA06964.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 450

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 136/405 (33%), Gaps = 52/405 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     +++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNNNLRYTSGPQWLQEYLLHDRWVMAVSGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-----FLNYDDSFFELLKAKSHA 241
            ++  +   H   F  ++ I      +   +   G I       N D++      ++   
Sbjct: 181 LIMNNLEFDHADIFDDLKAIQRQFHHLVRTVPGNGRILAPKGVKNIDETLEMGCWSELEY 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
           +G             D   R  K   + S  +V L G ++  V    +G H   N LM +
Sbjct: 241 IG------------GDGHWRAEKHREDGSVFDVYLDGDNVGTVRWPLVGDHNVNNALMAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +    D A +AL+ F   +   +R          T+ D+ +  +P +++  +  L
Sbjct: 289 AAARHVGVTPDLACEALAKFINTK---RRLELKGEANGVTVYDD-FAHHPTAIELTLGGL 344

Query: 361 SQISPHGEGRRIAVL----GDMCEMG----ELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411
              +  G+ R +AVL      M  +G    +L+ S H              V+     ++
Sbjct: 345 R--AKVGDSRILAVLEPRSNTMK-LGVHKDDLAPSLHA----------ADEVFFFQPPNI 391

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + + +      + S+ +D L   I      GD ++V  SN 
Sbjct: 392 PWSVEEIAQQCSQPAYSSDDLDELVKRIVEQAKPGDTILVM-SNG 435


>gi|322391677|ref|ZP_08065145.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus peroris ATCC
           700780]
 gi|321145488|gb|EFX40881.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus peroris ATCC
           700780]
          Length = 444

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 130/373 (34%), Gaps = 58/373 (15%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  ML+  LS I  T   IG             R   +  + +FE    
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSYLIGDG---------TGRGSENAKYFVFE---- 152

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  ++IT I   H   F+ ++++ +A  +  + + K   +F   +D 
Sbjct: 153 -SDEYERHFMPYHPEYSIITNIDFDHPDYFTSLDDVFNAFNDYAKQITKGLFVF--GEDK 209

Query: 231 FFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288
               + + +       IY +G   +  D       + +  S   V   G+++   H    
Sbjct: 210 ELRKITSNA------PIYYYGFDAEKDDIVASNLLRSTTGSTFTVHHHGENLGQFHIPTF 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +G++     D+D   + L  F   +   +R+   +     T+I + +  
Sbjct: 264 GRHNIMNATAVIGLLYTAGFDMDLVREHLKTFGGVK---RRFTEKIVND--TVIIDDFAH 318

Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +P  + A +    Q            PH   R IA+L       E + + +   A  L+ 
Sbjct: 319 HPTEIIATLDAARQKYPHKEIVAIFQPHTFTRTIALL------DEFADALNQADAVYLAQ 372

Query: 399 Y--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              +   V      V  L + + +   V   E +  L         D  V V   +    
Sbjct: 373 IYGSAREVDHGDVKVEDLANKIHKKHQVITVENVSPLLDH------DNAVYVFMGAGDIQ 426

Query: 457 -----FYRLINLL 464
                F RL++ L
Sbjct: 427 TYEYSFERLLSNL 439


>gi|317129301|ref|YP_004095583.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM
           2522]
 gi|315474249|gb|ADU30852.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM
           2522]
          Length = 316

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 130/327 (39%), Gaps = 18/327 (5%)

Query: 4   LWTFH---DLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAI--KGPHYDGHDFI 57
           + T      LL+ I  H  G +P  FV  GI+ +   +     +  +  +  +    D +
Sbjct: 1   MTTAQLDFHLLKTISSHIHGEIPLSFVAKGIATNINDVKEGFIYLPLDLENENNGITDHL 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           + A + GA    +  D++ S  S ++P+F V+D    + +LA         T++AI G  
Sbjct: 61  MKAKEHGAVASFIKKDLITSSLSHNLPLFEVEDYTSTIEQLAKEYVDEIDPTVVAIVGKN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIG-SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             + TK++L   L +    +     S    + V L+  +M    +  I E  ++ +  I 
Sbjct: 121 -SSFTKDLLAHILKTNYAVHKSDHLSKYEDLHVCLSALKMERHANVFISEYDLNSIHHIT 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+HL  P+  +IT I           EE+ +A   +  G+  T ++ L+ DD F     
Sbjct: 180 KLSHLFPPNYGIITEIGK---REKLSEEEVRAAYISLESGMRATASLVLDADDEFL---- 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              H      + + G +K+  FQ+   K+  E+      L+G  M            + +
Sbjct: 233 -VHHHEWKVDVVTSGSTKHCLFQIDTLKENGEELHFS--LKGVYMPFEVPITWKPYLKCV 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPK 323
           +  + I   L    +    +L  F  K
Sbjct: 290 IHAIAISVHLGLLAEEIYDSLKSFQFK 316


>gi|194337862|ref|YP_002019656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226722941|sp|B4SHE6|MURD_PELPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|194310339|gb|ACF45039.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 464

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 129/422 (30%), Gaps = 46/422 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTK 123
             V       I     P   V   L A    L      A    KA I+ ITG+ GKTTT 
Sbjct: 61  PAVYEADFCVISPGIPPHAEVVTTLQARNIPLYSEIELASRFCKARIVGITGTDGKTTTS 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLV 182
            ++                   +IGVP +   + +   D  + EL    L      +  +
Sbjct: 121 TLVHALCEEDGLRNGYRAYSVGNIGVPFSSMVLDMKAGDIAVVELSSYQL----ERSPTL 176

Query: 183 RPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P +AVI  I P HL      ++  A+AK  I+       T+  N DD+      A    
Sbjct: 177 KPEVAVIMNITPDHLDRYAGELQGYAAAKFRIYANQGAGDTLIYNEDDALLREHFA-CRD 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGYHMAQ 294
                I SFG                E   +          V+           G H   
Sbjct: 236 QFPFNIMSFGMEPACKGVPDIRTFFLEGDTLVAHTPDGDEPVLVTSDFLKKSFRGRHNIS 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  + +   L    +   + +  F   E    R    +       +++S   N  +++
Sbjct: 296 NVLAAVAVAGALGIQREVVCQVIREFRGVE---HRQEFVMTINGVDWVNDSKATNMNALR 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  L   +    G            G    + +  +   L    +S +   G     +
Sbjct: 353 QALEALPATAVLIAG------------GRDKGNDYAAITR-LVEKKVSLLIALGESQDKI 399

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
             A    + V  + +++   L  + +   G  V+     +S             F + ++
Sbjct: 400 VSAFKDVVAVKAAGSLEDAVLLARDAASSGQTVLFSPGCASFDMFKNFEDRGMQFKQCVH 459

Query: 463 LL 464
            L
Sbjct: 460 QL 461


>gi|156935392|ref|YP_001439308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533646|gb|ABU78472.1| hypothetical protein ESA_03250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 438

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A +IAITGS GK+T   ++     +        G+          L  +    +  
Sbjct: 101 REAQAPVIAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLEEGRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTFSLKAAAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAT---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGID------VGDYHLNRQQGEIWLRVRGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V     +G H   N L  L +         +++KAL+ F    G   R++ A       
Sbjct: 258 NVKEMKLVGQHNYTNALAALALADAAGLPRASSLKALTTFG---GLAHRFQLAYEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H    + +    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLAHYLTGDRV---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  G    AL    P        +TM+     I   +  GD+V++
Sbjct: 366 --RLYCFGRDGDALAALRPEISERM--DTMEEAMKVIAGRVQPGDMVLL 410


>gi|53711596|ref|YP_097588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis YCH46]
 gi|60679846|ref|YP_209990.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis NCTC
           9343]
 gi|265764980|ref|ZP_06093255.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_16]
 gi|52214461|dbj|BAD47054.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides fragilis YCH46]
 gi|60491280|emb|CAH06028.1| putative UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           fragilis NCTC 9343]
 gi|263254364|gb|EEZ25798.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_16]
          Length = 464

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 140/409 (34%), Gaps = 42/409 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +  A  +VV T  V    +     +  D+      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKATTLVVLTPAVPQEHAEL--TYFRDNGFEIQKRAQVLGTITRSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M             C            T   +     + + E       E
Sbjct: 119 GTHGKTTTSTMTAHLFHQS--HVGCTAFLGGISKNYGTNLLLSSTSPYTVIEA-----DE 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H + P+++VIT   P HL  +   +    +       ++  G + +       + 
Sbjct: 172 FDRSFHWLSPYMSVITATDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RKG 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMA 293
           +  +        +Y++ + +  DF     +  + + +++       ++ +  G+      
Sbjct: 226 ISLQPKVKEGVKMYTYSRDEG-DFHAENIRIGNGEIFIDFVGPDIRIDNIQLGVPVSINI 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +
Sbjct: 285 ENGVAAMALAHLNGVTPEEIKQGMASFRGVD---RRFDFKIKNNRIVFLSD-YAHHPSEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHV 404
           K ++  + ++  + + +  AV      +   ++ F+ D A+         ++ +Y     
Sbjct: 341 KQSVMSMREL--YRDKKITAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQ 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            + G     + D L   I     +  + +   +++       +L  GD+
Sbjct: 397 PIPGVSSRLIYDNLRPGIEKSMCK-KEEILDVLKAKHIEVLITLGAGDI 444


>gi|302382172|ref|YP_003817995.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192800|gb|ADL00372.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 469

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 117/385 (30%), Gaps = 45/385 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YNNHIGVPLTLARMPVDVDFGI 164
            T + + G+ GK+T   M+   L    +    +      N         + +    D  +
Sbjct: 108 PTSVGVAGTSGKSTITGMIAWILQQAGRDPTVMNGAVMRNFADADHPFASALVGSPDLFV 167

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  S     R+      P +AV++ I+  H      +EE+           +   T  
Sbjct: 168 AEVDESDGSIARY-----DPSVAVVSNISLDH----KSMEELRDLFGGFTGRAQ---TAV 215

Query: 225 LNYDDSFFELLKAKSHALGI-KTIYSFGKSKNA-DFQLRKWKQCSEQSWMEV--QLQGKS 280
           LN D+     L       G  + + +F    +A D                +  +  G  
Sbjct: 216 LNLDNPETAALAQGLVDDGRGEAVLTFALGNDAADLSAHDLVPLPTGMTFALTERAGGAR 275

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +    +  G H   N L  LG V  L   +D A+   +      G  +R          T
Sbjct: 276 IAATLNVPGAHNVANALAALGAVRALGVPLDQAV---ASLETFAGIRRRMEVVGAANGVT 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL---SQSFHIDLAEVLS 397
           +ID+ +  NP  + A +  L          R+ +L      G L      F    A +L 
Sbjct: 333 VIDD-FAHNPDKIAATVKTLHAFDG-----RLLILFQPHGFGPLKLMKAEFIDTFAGLLR 386

Query: 398 LYNI----SHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             ++      V+  G          + A   A  R+               +      GD
Sbjct: 387 PDDVLLMPEPVYYGGTTDRSVGSEDIAAGVRAAGRTAEA--LSDRAACGDRLIDLARPGD 444

Query: 446 VVVVKSSNSCGFYRLINLLLEEFPA 470
            ++V  +      +    LL+   A
Sbjct: 445 RIIVMGARDDTLSQFAAELLDRLRA 469


>gi|167035505|ref|YP_001670736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida GB-1]
 gi|166861993|gb|ABZ00401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           GB-1]
          Length = 450

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 130/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         + A IIAI+GS  K+T   ++    +   K  A  G+          L 
Sbjct: 98  LSGDIELFARHATAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP-----ALD 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 153 LLADDVELYVLELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G ++   + +N  D+    L  +      +  ++FG ++  DF+    ++   + ++  
Sbjct: 209 RGAKQ---VVVNRQDALSRPLPVE-----GRPCWTFGLNQ-PDFKAFGLREVDGEKYLAF 259

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +        +  ++AL  F     R +  R   
Sbjct: 260 EFQALMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGLAHRCQWVR--- 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      D+S   N   + AA++ +  +    EG+ + + G   +  E + +    +  
Sbjct: 317 ERNGVNWYDDSKATN---VGAALAAIEGLGADIEGKLVLIAGGDGKGAEFT-ALREPVKR 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L DAL   + +   +++D            GD V++
Sbjct: 373 FCRA-----VVLLGRDAERLADALGDDVPLVRVKSLDDAVQQCAQLAQAGDAVLL 422


>gi|144897243|emb|CAM74107.1| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 343

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 109/300 (36%), Gaps = 26/300 (8%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219
                E     L + R     V+   A  T +   HL     ++   +AK  +F + L +
Sbjct: 33  THAAMEASSHGLDQFRL--DGVKLQAAGFTNLTRDHLDYHGDMQAYLAAKLRLFTDLLPE 90

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N D          + A G + +  FG++  A+  L+  +  S    +++ + G 
Sbjct: 91  DGVAVINADCPVA---AQVAQAAGSRRVLRFGRA-GAELALKDIRPDSHGQVLDLDVLGH 146

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  +     G   A N L  LG+V     +   AI AL       G   R +   ++   
Sbjct: 147 SATIRLPLAGTFQAANALAALGLVIGCGGNALAAINALESLTEIPG---RLQKVADKDSA 203

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Y   P +++  ++ L    PH  GR + V G     G+        + E+ +  
Sbjct: 204 PIFVD-YAHTPDALETVLTALL---PHATGRLLVVFGC---GGDRDPGKRPQMGEIAARL 256

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
               V ++  +  +   AL R+  +  ++                S L  GDV+VV  K 
Sbjct: 257 -ADIVLVTDDNPRSEDPALIRAAIMTAAKGAMEIADRRTAIRHAVSLLRQGDVLVVAGKG 315


>gi|319791666|ref|YP_004153306.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
 gi|315594129|gb|ADU35195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
          Length = 735

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 149/444 (33%), Gaps = 63/444 (14%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR  A  + +        +  DF+    +  A         V    +  +P+  +++   
Sbjct: 282 SRLPATGKPYV--PTAAREAADFVAKIAELSATNPASAA--VEEEPTAQLPLVPIEEPP- 336

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
                   A       ++A+TG+ GKTT   +    +    K+ A  G+    +   L  
Sbjct: 337 --------APKGYTPAVLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTL-A 387

Query: 154 ARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           A +  +   D  + EL    L  ++       P  A +  +   HL     +   A+AKA
Sbjct: 388 AHIDAETLPDVWVLELSSFQLDGVQ----GFEPTAATVLNLTQDHLDWHGDMPAYAAAKA 443

Query: 212 EIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADFQLRKW 263
            IF      G + LN DD+    +     + K     I+T  +FG +   +  D+ + + 
Sbjct: 444 RIF---GAKGLMILNRDDAGVMAMLPPPVRVKLQRPQIRTHVTFGSAMPLRPGDYGIERI 500

Query: 264 KQCS---------------EQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSIL 306
                                + +E ++  + +         G H A N L  L + +  
Sbjct: 501 NGIGWLVRALEADETQKRKRGAVVEEEIFFQRLMPADALRIRGRHNAMNALAALALATAA 560

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   +          G   R             D+S   N  +  AA++ L +    
Sbjct: 561 DCPLGPMLYG---LREYRGEPHRVEPIALIDDVEYFDDSKGTNVGATVAALNGLGE---- 613

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVH 425
            + R + +LG   +  +        LA  ++  +   V L G     ++ AL    + + 
Sbjct: 614 -DRRVVVILGGEGKGQDFEP-----LAAPVAQ-HARAVVLIGRDAPLIEAALANTGVSLM 666

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
           ++ +MD       +    GD V++
Sbjct: 667 HAASMDEAVKLAAARANPGDAVLL 690


>gi|309379964|emb|CBX21375.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 458

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 126/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGIPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG      +Q  +          +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG--WQAGEVNADG---SFDVLLDGKKA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHAGVDIRTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKAAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +  +P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWDVAEALVPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHGKLLDALK 458


>gi|253564353|ref|ZP_04841810.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_2_5]
 gi|251948129|gb|EES88411.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_2_5]
          Length = 464

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 140/409 (34%), Gaps = 42/409 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +  A  +VV T  V    +     +  D+      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKATTLVVLTPAVPQEHAEL--TYFRDNGFEIQKRAQVLGTITRSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M             C            T   +     + + E       E
Sbjct: 119 GTHGKTTTSTMTAHLFHQS--HVGCTAFLGGISKNYGTNLLLSSTSPYTVIEA-----DE 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H + P+++VIT   P HL  +   +    +       ++  G + +       + 
Sbjct: 172 FDRSFHWLSPYMSVITATDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RKG 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMA 293
           +  +        +Y++ + +  DF     +  + + +++       ++ +  G+      
Sbjct: 226 ISLQPKVKEGVKMYTYSRDEG-DFHAENIRIGNGEIFIDFVGPDIRIDNIQLGVPVSINI 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ +
Sbjct: 285 ENGVAAMALAHLNGVTPEEIKQGMASFRGVD---RRFDFKIKNNRIVFLSD-YAHHPSEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHV 404
           K ++  + ++  + + +  AV      +   ++ F+ D A+         ++ +Y     
Sbjct: 341 KQSVMSMREL--YRDKKITAVF--QPHLYTRTRDFYKDFADSLSLLDEVILVDIYPAREQ 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
            + G     + D L   I     +  + +   +++       +L  GD+
Sbjct: 397 PIPGVSSRLIYDNLRPGIEKSMCK-KEEILDVLKAKHIEVLITLGAGDI 444


>gi|156932462|ref|YP_001436378.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530716|gb|ABU75542.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
          Length = 459

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 105 VVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +   G I    
Sbjct: 162 YDCAFFDKRSKFVHYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIWPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + +V   
Sbjct: 222 NDINLKQVMAMGCWSEQEQL-----GEQGRWQAK--KLTNDASKWEVWLDGECVGQVEWQ 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  QN L  +     +      A +AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNAR---RRLELRGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R IAVL      M  MG         L          
Sbjct: 331 AHHPTAILATLAALRG-KVGGTARIIAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + DA  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLFQPHHIPWQVAEVADACIQ--PAHWSADIDTLVEMIVKTAQPGDHILVM-SNG-GF 438

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++    Q
Sbjct: 439 GGIHQKLLDALAKKAEKAQ 457


>gi|325519756|gb|EGC99063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 161

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 6/156 (3%)

Query: 313 AIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             + L  F P +GR +  R  +      T++D++YNANP SM+AAI VL+         R
Sbjct: 1   IKQGLEAFEPVKGRLQVRRATVGGLAGATVVDDTYNANPDSMRAAIDVLAGQPAP----R 56

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           + V+GDM E+G+   +FH ++        +  ++  G        A   +   H+ +   
Sbjct: 57  VLVIGDMGEVGDEGPAFHREIGAYARERGVDALFALGDASRDACTAYGDTAR-HFGDVGA 115

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   + S       V+VK S      R+++ L  +
Sbjct: 116 LVEALLASGYDAAATVLVKGSRYMKMERVVDALTNQ 151


>gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 523

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 152/473 (32%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKT 246
             I+P H+         +    K ++     K     +N + + F+ +  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAETAHFDEIYAAATTTTNPDS 265

Query: 247 IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +            DF+    +   +++  ++              +     +G  
Sbjct: 266 IYLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKAKKLPINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K +       GR +  R   +     ++   Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKSHG----MVVVDYAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A +S +   +     + I V+G     G+   S     +E L+ Y     +L     
Sbjct: 381 SMMALMSFMQ--NEFDNPKIIVVVGAP---GDKGVSRRPGFSESLTAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSETMDGL--FLFIQSSLV---DGDVVVV--KSS 452
           G     ++ + +   I     +    L     I  ++      DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGA 487


>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           2_1_7]
          Length = 441

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 92  FAGRYTDSKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGNSLALQV----AEDPH 147

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I +   K
Sbjct: 148 AVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTK 203

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++          K  +E + + ++    
Sbjct: 204 DDAFIFWNDDPIIAREIAKRHPEA--TLYPFAETHEN-----GVKGYTENNQVVIETANG 256

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     I+    +    +LS F   E    R    L  
Sbjct: 257 TFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE---HRLEKVLRV 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 314 RGVDYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEI-EEL 360

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + ++  + +M+            GD V++
Sbjct: 361 VNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 414


>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
 gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
          Length = 466

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 126/367 (34%), Gaps = 48/367 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I A+TGS GKTTT  ++   L          G+    +   L+      D D  + E
Sbjct: 116 PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL---LSKIEEIKDTDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T    P++AV+T ++P HL     +EE   AK  IF        + LN
Sbjct: 173 LSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVFAKKNIFRYQSAEDRLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +D+        ++       +  F +     K A  +         ++  E+    K+ +
Sbjct: 228 FDNDITREFAGEAKG----DVVYFSRKTVLEKGAMLKDDMLVFRDGETETEI---AKASD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +V  G+  H  +N L     V     D D   K  + F   E    R             
Sbjct: 281 IVIPGV--HNVENFLAATAAVIDC-VDRDVIRKVATTFTGVE---HRIELVREINGVKFY 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  ++P    A ++           + I + G     G   +  +  L  V++   + 
Sbjct: 335 NDSIASSPTRTIAGLNSFKD-------KVILIAG-----GYDKKIPYDALGPVIAE-KVK 381

Query: 403 HVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVK-SS 452
            + L G     ++ AL              +    +++            GDVV++  +S
Sbjct: 382 CLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSPAS 441

Query: 453 NSCGFYR 459
            S   ++
Sbjct: 442 ASFDMFK 448


>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
 gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
          Length = 446

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 127/371 (34%), Gaps = 46/371 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS  K+T   ++           A  G+          L  +  D+D  + E
Sbjct: 109 NAPIIAITGSNAKSTVTTLVGEMAKQCGLKAAVGGNLGTP-----ALELLNSDIDVYVME 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L       +A +  I+P HL  +   E     K +IF G EK     +N
Sbjct: 164 LSSFQLEATEHLNA----KVATVLNISPDHLDRYDSYEGYYQTKYKIFNGCEK---AVIN 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD+      A+   L       F    K ADF L +    ++   + V+          
Sbjct: 217 LDDNL-----AQPKTLNCPEQIGFSIDGKGADFVLDR---TAQPWQLIVEGDALLSVDQL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L +      D+D  +KAL  F    G   R +           ++S
Sbjct: 269 KIKGLHNYSNALAALALGHGFGLDMDGMLKALKSF---PGLDHRCQWIKQVDEVDFYNDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + +AA+  L    P    R + +LG + +  +        +   +    +S V 
Sbjct: 326 KGTNVGATEAALKGLG---PEYAKRIVLMLGGVGKDADF------KVLRPVIDQYVSKVI 376

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVV---------VVKS--SN 453
           + G     +   L   + +  +E+ +  F    +++   G VV         +     + 
Sbjct: 377 VYGQDQDIIAKDLS-GVDLDRAESFEQAFEMAYRNADHKGAVVFSPACASFDMFSGFEAR 435

Query: 454 SCGFYRLINLL 464
              F  ++  L
Sbjct: 436 GEAFKSMVEAL 446


>gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
           DSM 22836]
          Length = 444

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 125/360 (34%), Gaps = 37/360 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+++  A R  S A +I ITGS GKTTT  ++   L S        G+        +   
Sbjct: 90  LSEMEFAKRYTS-AKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIGRSFARQV--- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
               + D+ + EL    L  +    +  +  IA++  I P HL  +   +++   AK  I
Sbjct: 146 -AEDNFDYYVLELSSFQLENM----YSFKADIAILLNITPDHLDRYDHDMQKYVDAKMRI 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   +        +D        K  + G +  Y+F     AD ++       E + ++
Sbjct: 201 VQNQTEEDAFIFWEEDPIVSKEIQKLVSKGKQ--YTF-----ADHKVGNAIAYPENNEIK 253

Query: 274 VQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +          E +    G H   N L +     +L    +    +LS F   E    R 
Sbjct: 254 IDTPKSIFIMKEDLLALEGTHNLYNSLASGITAKLLDITDENLRHSLSDFQGVE---HRL 310

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   N  S   A+  +         + + +LG     G    + + 
Sbjct: 311 EKVARVRGIQFINDSKATNVNSCWYALQSMKT-------KVVLILG-----GTDKGNDYT 358

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ E L    +  +   G     L       I ++  + +M        +   +GD V++
Sbjct: 359 EI-EQLVKDKVRALVFLGVDNSKLHKFFDGKIDNIVDTSSMKDAVEKSYALAQEGDTVLL 417


>gi|317474538|ref|ZP_07933812.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909219|gb|EFV30899.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 460

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 122/354 (34%), Gaps = 42/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  M       S     A +G  + + G  L L++        + E   
Sbjct: 115 LCVAGTHGKTTTSTMAAHLFHQSHIGCTAFLGGISKNYGTNLLLSQASPYT---VIEA-- 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E     H + P+++VIT   P HL  +   E    +       ++  G + +    
Sbjct: 170 ---DEFDRSFHWLSPYMSVITATDPDHLDIYGTREAYLESFRHYTTLIQPGGALII---- 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
              + L  +        +Y++ + +  DF     +  + + +++       + ++     
Sbjct: 223 --RKGLALQPDVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIRLGVP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  
Sbjct: 280 IGINIENGVAAMALAHLNGVTDEEIKQGMASFRGVD---RRFDFKIKTSRLVFLSD-YAH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------Y 399
           +PA +  ++  + ++  + + +  A+      +   ++ F+ D A+ LSL         Y
Sbjct: 336 HPAEIAQSVKSVREL--YQDKKITAIF--QPHLYTRTRDFYKDFADSLSLLDEVILTEIY 391

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
                 + G     + D L   I        + +   +          L  GD+
Sbjct: 392 PAREQPIPGVSSRLIYDNLRPGIEKCICP-KEDILNLLSKKSVEVLIVLGAGDL 444


>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 146/399 (36%), Gaps = 43/399 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             AV K   LVVV+  +  S   L   V      +  + ++ +A R      I+AITG+ 
Sbjct: 64  DEAVDK-VQLVVVSPGVPLSKRPL---VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L    +     G+        +       +    + E+    L  I++
Sbjct: 120 GKTTTTTLVGEILKKQYEDVVVCGNIGLPFIDTI---ETSSENTIFVLEISSFQLETIKY 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                +P +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L  
Sbjct: 177 F----KPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDLIG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMA 293
            +       +  F K+K    Q +      E+  +    +GK+ E++        G H  
Sbjct: 233 LAKG----NVIVFSKNK---CQFKNM-VFVEKDTIYFTFEGKTQEIMKKDEIFIPGEHNL 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  +        + DT  + L  F   E    R             ++S   N  + 
Sbjct: 285 ENALAAISCTLPFGIEKDTIEQVLKTFRGVE---HRIEFVAEINGIKFYNDSKGTNTDAA 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + A+              I + G      +  +SF    A +++   +  V+L G     
Sbjct: 342 EKALRAFES-------PIILIAGG----YDKGESF-EKFASLVAK-KVKKVFLLGQTKHK 388

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVV 449
           +   L + I     E +  L   ++ S     +GD+V++
Sbjct: 389 IASELEK-IGYKNFELVSTLKEAVRKSFECAQNGDIVLL 426


>gi|254683377|ref|ZP_05147237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. CNEVA-9066]
          Length = 450

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGT---VACEVAQDAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    L A S    +    +      A         C + + +  + +    
Sbjct: 219 YSAINADDADVMALSAYSKGQKVLFSTTKEIEDGA---------CIKDNALYFKAEKVVE 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  + I  +L    +     L  F   + R +      N+ F+  
Sbjct: 270 VDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFY-- 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + + A+S  +Q +         +L    + G                 N+
Sbjct: 328 -NDSKATNMLATEKALSAFTQPT--------VLLAGGLDRGNEFDDLIPYF------KNV 372

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf0-1]
 gi|118595675|sp|Q3K742|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf0-1]
          Length = 448

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 141/355 (39%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA I+AI+GS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G ++     +N  D+    L  +      +  ++FG SK  DF+    ++ + + ++  
Sbjct: 207 RGAKQ---FVVNRQDALTRPLMGE-----GQPCWTFGLSK-PDFKAFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +   +    D  + AL  F   E R +  R   
Sbjct: 258 EFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLVALRTFAGLEHRCQWVR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +       ++S   N   + AA++ +  +    +G+ + + G     G+   +   DL +
Sbjct: 315 DLDGVGYYNDSKATN---VGAALAAIEGLGADIDGKVVLIAG-----GDGKGAEFKDLRD 366

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  +   V L G     + +A+  ++ +  + T+       +++   GDVV++
Sbjct: 367 PVAT-HCRAVILMGRDSDKIGEAIGDAVPLIRATTLVDAVAQCRAAAQPGDVVLL 420


>gi|332663135|ref|YP_004445923.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331949|gb|AEE49050.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 456

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 125/378 (33%), Gaps = 44/378 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   +      +AI G+ GKTTT  +    L S      A +G    +      L  
Sbjct: 97  RAEVLGIISRGMKTVAIAGTHGKTTTSSLTAHLLRSTGVDCTAFLGGIARNFESNYVLG- 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIF 214
                ++ + E        +      + P IA I ++   HL  +   E + +       
Sbjct: 156 ---SSEWVVVEADEFDRSFLH-----LHPDIASIMSMDADHLDIYGDAETLLNTGFKAFA 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           + ++  GT++L ++          +H        SFG  +  D+Q    +        + 
Sbjct: 208 KQIKPGGTLWLQHN--------LTTHFDATTAYRSFGV-EGGDYQAHNIRVEKGYFVFDY 258

Query: 275 QLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               + ++       G H  +N  + + I   L A  +     L  F   +   +R+   
Sbjct: 259 LSPEREIKGLRMPLPGRHNIENATVAMSIALQLGASDEALRDGLEAFRGVK---RRFEII 315

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    D+ Y  +P  + AAI    ++ P    R   V      +   ++ F    A
Sbjct: 316 HRDEEVAFFDD-YAHHPTELNAAIGAARELFPA--ARITGVF--QPHLYSRTRDFAEGFA 370

Query: 394 E---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           E         +L +Y    + + G     L   L R+ +VH   T   L   +Q +  + 
Sbjct: 371 EALDGLDEIYLLDIYPARELPIPGVSSEMLVK-LMRNPNVHLI-TKAELLPALQKNKPE- 427

Query: 445 DVVVVKSSNSCGFYRLIN 462
            V++   +       L+ 
Sbjct: 428 -VLLTLGAGDI--DTLVE 442


>gi|241763201|ref|ZP_04761260.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367700|gb|EER61966.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 859

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 138/403 (34%), Gaps = 58/403 (14%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V  A+     A     +  ++A+TG+ GKTTT  ++    ++         +   ++ 
Sbjct: 450 RNVGQAMVDRLFAHGDDGRIPVVAVTGTNGKTTTARLIAHLFTAQGMRVGMTNTDGVYVN 509

Query: 149 VPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-A 195
                +             +  +VD  +FE   +  G +R      R  +AV+T I    
Sbjct: 510 GRQIDSGDCSGPKSARNVLLHPEVDAAVFE--TARGGILREGLGFDRCQVAVVTNIGAGD 567

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           HL     + +E++A  K  I + +  TG   LN  D     + +         I  F   
Sbjct: 568 HLGLNYITTVEDLAVLKRVIVQNVTPTGYAVLNATDPIVAAMASACPG----KIIYFASD 623

Query: 254 KNADFQLRKWKQC-------------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++         Q              +E SW E  +  + + +  +G      +N++ ++
Sbjct: 624 RHHPVMATHRAQGHRTVYVDGDSIVAAEGSWRE-TIHLRDVPITRNGKIGFQVENVMASV 682

Query: 301 GIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      T  + LS F +  +    R+     +G   + D  Y  NP +M+A +  
Sbjct: 683 AAAWGAGLPWQTIRRGLSGFVNDSDNAPGRFNLMDFKGATVIAD--YGHNPDAMRALVQA 740

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GF 409
           +  +  +   R + + G      E  +   + L EV        V L           G 
Sbjct: 741 VEALPAN--RRSVVISGAGDRRDEDIREQTVILGEV-----FDDVILYQDAAQRGRGDGE 793

Query: 410 HVLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            +  L++ L  +    + E + G           L  GD+ +V
Sbjct: 794 VMALLREGLAGATRTQHIEEIRGEFIAIDAALDRLKSGDLCLV 836


>gi|328950960|ref|YP_004368295.1| UDP-N-acetylmuramate--L-alanine ligase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451284|gb|AEB12185.1| UDP-N-acetylmuramate--L-alanine ligase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 452

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK----TGTI 223
           ++ + E   L   ++ + A++T +   H++      +    +   + +   +     G +
Sbjct: 154 IAEVDESDPLFQHLQVNTALLTNLEDDHVAAPGQTRQNYHESFEALIQATRRFAQRAGHV 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
             N D    E + A    +G      FG    A F+        E S   V   G  + E
Sbjct: 214 VYNADWPLLEEVTAGLERVG------FGLEHGA-FRAEAVDLSPEGSRFRVVWDGTVLGE 266

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  + + ++   D++    AL+ F     R +R      +     +
Sbjct: 267 ARLRVLGLHNVMNALGVIAVSALEGLDLEAVFAALAEFRGAHRRFERV----GEINGAWV 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---------MCEMGELSQSFHIDLA 393
            + Y  +P  + A +           GRR+ V+           M E    +     D A
Sbjct: 323 VDDYAHHPTEVAATLQAARAT-----GRRVRVVFQPHRYLRTLQMWERFAEALQL-ADEA 376

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            VL +Y      + G     + + L    H       D    ++  S    D+++   + 
Sbjct: 377 VVLEVYAAGEAPIEGVSGRLIAERLQALGHPARFMEWDEAQAYLTESARANDLILTMGAG 436

Query: 454 SC 455
             
Sbjct: 437 DV 438


>gi|310816183|ref|YP_003964147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
 gi|308754918|gb|ADO42847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
          Length = 466

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 126/424 (29%), Gaps = 40/424 (9%)

Query: 35  RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           R  A  + F        D  D +   V       +        I +       VD+ +G 
Sbjct: 45  REAAEADGFLVQDLTRADAWDGVRLLVTSPGIAHLYPKPHPV-IAAAWAAFVPVDNDIGL 103

Query: 95  LNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             +            +  ++ +TGS GK+TT  +L   L    +     G+    +    
Sbjct: 104 FFRSYADREWDDFDIRPRVVTVTGSNGKSTTSALLHHILEECGRPAQLAGNIGRGVLD-- 161

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  D +  + EL        R LT    P IAV+T ++P HL   +G+    +AK 
Sbjct: 162 --LPPARDGEVVVLELSSYQTDLARALT----PDIAVLTNMSPDHLDRHAGMGGYFAAKR 215

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +F          +  D++    L  +     G   +      +    +   W   + + 
Sbjct: 216 RLFAEGGPD-RAVIGVDENEGRYLANQLIEGPGDDRVIFTSSGQK--LESAAWSVFARKG 272

Query: 271 WMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           ++    +G+      +  V    G H  QN      +   L           +  H   G
Sbjct: 273 FLTEWRKGRQIASIDLRQVVGLPGAHNHQNACNAYAVARSLGLGPKAI---EAALHSYPG 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R +    +     +++S   N  S   A+     I       R    G   E G   
Sbjct: 330 LPHRSQRIGEKDGVIFVNDSKATNVDSAAKALQAFQNI-------RWICGGLEKEGGLGG 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H+         ++   ++ G         L   +      TM        +    GD
Sbjct: 383 LLPHVG--------SVKKAYVIGRDAPHFALQL-TGVEAEICTTMGQAVAQAFADAEPGD 433

Query: 446 VVVV 449
           +V++
Sbjct: 434 IVLL 437


>gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 532

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 150/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 43  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKSNGANCYVAEQPYPEGKGMH---ALIVR 97

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 98  DVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISSVNDV 157

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 158 VGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 217

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
             I+P H+         +    K ++     K     +N + + F E+  A +      +
Sbjct: 218 LNISPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAETANFNEVYAAATTTTNPDS 274

Query: 247 IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +            DF+    +   +++  ++              +     +G  
Sbjct: 275 IYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGDF 334

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K +       GR +  R   +     ++   Y  N A
Sbjct: 335 NESNGTAAIIGAGLAGLNHDQCAKGIRNVT-IPGRMQTERTKEHG----MVVVDYAHNKA 389

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A +  +   +   + + I V+G     G+   S     +E LS Y     +L     
Sbjct: 390 SMMALMRFMQ--NEFNDPKIIVVVGAP---GDKGVSRRPGFSESLSAY-ADKAFLTTDDP 443

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
           G     ++ + +   I     +               +S    DVV++  K +
Sbjct: 444 GFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGA 496


>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M163/99/10]
 gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis B2/94]
 gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M644/93/1]
 gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M13/05/1]
 gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M292/94/1]
 gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           F5/99]
 gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
 gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
          Length = 467

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 122/367 (33%), Gaps = 49/367 (13%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +      +      G   R      +G    +++S   N    +A    LS    +    
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNA---EATAPALSSFPQNIY-- 356

Query: 371 RIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
              V G     G  S  +F   +A+          +L G         L  ++    S+T
Sbjct: 357 -WIVGGVPKAGGINSLTAFFPRVAKA---------YLIGEAAAQFAATLGGAVPFEISDT 406

Query: 430 MDGLFLF 436
           +      
Sbjct: 407 LAAAVAH 413


>gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus NCFM]
 gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus acidophilus NCFM]
          Length = 523

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 150/473 (31%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKSNGANCYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
             I+P H+         +    K ++     K     +N + + F E+  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAETANFNEVYAAATTTTNPDS 265

Query: 247 IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +            DF+    +   +++  ++              +     +G  
Sbjct: 266 IYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K +       GR +  R   +     ++   Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKGIRNVT-IPGRMQTERTKEHG----MVVVDYAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A +  +   +   + + I V+G     G+   S     +E LS Y     +L     
Sbjct: 381 SMMALMRFMQ--NEFNDPKIIVVVGAP---GDKGVSRRPGFSESLSAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
           G     ++ + +   I     +               +S    DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGA 487


>gi|261254015|ref|ZP_05946588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
 gi|260937406|gb|EEX93395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
          Length = 451

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 147/410 (35%), Gaps = 33/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +E I      +   +   G I     D   E +  +      +
Sbjct: 180 TLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQDIALEDVLQR--GCWSE 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           T ++    + A+++    K  ++ S  +V  Q + + +V    +G H   N LM +G   
Sbjct: 238 TEFT---GQQANWRAE--KLIADGSEFKVFFQDEEVGIVKWDLVGDHNVDNALMAIGAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A ++L+ F   +   +R          T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPDLACESLAKFINTK---RRLELKGQVNGVTVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
             G    IAVL        + +  H D A   SL     V+L     +  ++KD   +  
Sbjct: 347 KVGSDNIIAVLE--PRSATMKRGVHKD-ALAASLAKADQVFLYQPDSIDWSVKDIASQCH 403

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
                S  +D L   I S    G  ++V  SN  GF     +L+  L E+
Sbjct: 404 QPADTSADVDELVAKIVSHAQAGSHILVM-SNG-GFEGIHGKLLEKLGEK 451


>gi|254671874|emb|CBA04108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha275]
          Length = 458

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++A+ G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLAVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK  
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +    L E  
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSALPESLKE-- 389

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 390 ----ADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 445 -GFGGIHGKLLEALR 458


>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|149242349|pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
           Adp
 gi|149242350|pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
           Containing Sulfonamide Inhibitor
 gi|170785037|pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|170785038|pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261087|pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261088|pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
          Length = 445

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +A   I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|315617649|gb|EFU98255.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 3431]
          Length = 457

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 38/418 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVSPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPR 420
            G  R IAVL      M  MG         L           V+L    H+      +  
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVAE 401

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           +     H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQPAHWSGDVDALADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|170766667|ref|ZP_02901120.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
 gi|170124105|gb|EDS93036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
          Length = 457

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 38/418 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVSPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPR 420
            G  R IAVL      M  MG         L           V+L    H+      +  
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVAE 401

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           +     H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQPAHWSGDVDALADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7245652|pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7546574|pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|157834055|pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +A   I+E       
Sbjct: 155 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYEN---AKV 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 208 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 256

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 364 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 409


>gi|313203972|ref|YP_004042629.1| udp-N-acetylmuramate--L-alanine ligase [Paludibacter
           propionicigenes WB4]
 gi|312443288|gb|ADQ79644.1| UDP-N-acetylmuramate--L-alanine ligase [Paludibacter
           propionicigenes WB4]
          Length = 479

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 116/330 (35%), Gaps = 35/330 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   +  ++  I I G+ GKTTT  +    L   + +  A +G   N+     T   
Sbjct: 119 RAQVLGDITRQSKGICIAGTHGKTTTSTIAAHLLYQSQVSCNAFLGGIANNYN---TNLL 175

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + +  + E       E     H + P++AVIT+  P HL  +   +    +      
Sbjct: 176 LSAESNLVVIEA-----DEYDRSFHQLSPYMAVITSADPDHLDIYETADAFRESFEHFTS 230

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G + +         L+          +Y++  +   DF     +  + +   +  
Sbjct: 231 LIRPGGALVMRKGIDIVPQLQKGVK------LYTYSMNDGGDFTAENIRTVNGEIHFDFV 284

Query: 276 LQGKSMEVVHHGIGYH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                +  V  G+      +N +  + +  +     D     +S F    G  +R+    
Sbjct: 285 TPNDRLSDVRLGVPVQINVENSVAAMALAWLNGVSFDELRTGISSFS---GIYRRFNVVY 341

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLA 393
                  +D+ Y  +P+ +KA+I+ +  + P+   R+I  V      +   ++ F    A
Sbjct: 342 KSDKIVYMDD-YAHHPSELKASIASIRNLYPN---RKITGVF--QPHLYTRTRDFATAFA 395

Query: 394 E---------VLSLYNISHVWLSGFHVLAL 414
           E         +L +Y    + + G     +
Sbjct: 396 EALSQLDELILLDIYPARELPIEGVDSDLI 425


>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 36/347 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPL 151
           + ++ +A         I ITG+ GKTT   +L+  L            IG+    I    
Sbjct: 107 IGEINIAWESLKNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGTPLCEIAYST 166

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  ++D+ + EL       I   TH ++P I + TT  P HL     ++     K 
Sbjct: 167 K----SKNIDWIVAELSSFQ---IEIATHCIKPKIGIWTTFTPDHLDRHKTLDNYFKIKN 219

Query: 212 EIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +   L+++     NYDD +  E  K+  + + I T  +   S + D+ +       E+ 
Sbjct: 220 SL---LKQSEFRIYNYDDQYLKENFKSLLNGIWITTNPNVSDSDHCDYWINNENFIVERR 276

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L+   ++      G H  QN+L+ +     +    +    AL  +        R 
Sbjct: 277 EKLLSLKNFKLK------GNHNTQNLLLAVAAARKIGLSTERIKNALLSYEQLP---HRM 327

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +    +I++S   N  S  A I+ +       +G  I + G   + G+      I
Sbjct: 328 ETIFQRDELEIINDSKATNFDSSVAGINAI-------KGSPIIISGGRLKNGDS-----I 375

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           +  ++++      V+L G     LK  +      +   T + L   I
Sbjct: 376 EWVKIINK-KAKAVFLFGESSQTLKKLILEGGFKNDILTFNDLSEVI 421


>gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M490/95/1]
 gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           B1/94]
 gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
 gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
          Length = 467

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 122/367 (33%), Gaps = 49/367 (13%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +      +      G   R      +G    +++S   N    +A    LS    +    
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNA---EATAPALSSFPQNIY-- 356

Query: 371 RIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
              V G     G  S  +F   +A+          +L G         L  ++    S+T
Sbjct: 357 -WIVGGVPKAGGINSLTAFFPRVAKA---------YLIGEAAAQFAATLGSAVPFEISDT 406

Query: 430 MDGLFLF 436
           +      
Sbjct: 407 LAAAVAH 413


>gi|108563844|ref|YP_628160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPAG1]
 gi|107837617|gb|ABF85486.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori HPAG1]
          Length = 447

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 134/395 (33%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEVSSHAIVQKRVAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHKSIENYRDAKNSFF---KDEGLKVINRDETNALFNPINAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLTPSISASLCYQQDLRDPNLKEIAL------IHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++     L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLEVIAPLLENFYGVKGRLEIVHSK------PLVIVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    V  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAIASCYAHQIVLTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GISDSSKVIVEKDRKKAILNALENLKDDEVLLILG 415


>gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
 gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
          Length = 463

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 122/369 (33%), Gaps = 35/369 (9%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV    D    +          SK  I+A+TGS GK+T   M+        K  A  G+ 
Sbjct: 95  PVVLARDADIPIVGDVELFAQESKLPIVAVTGSNGKSTVTRMVEFVAKQCGKNVAAAGNI 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
              +   L L       D  I EL    L         ++   A +  I+  H+  +  +
Sbjct: 155 GVPV---LDLLLQEQHPDAVILELSSFQL----ESVSSLKLKAAALMNISADHMDRYCTL 207

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRK 262
           +E   AK  IF       T  LN         +          + +FG   +   F L  
Sbjct: 208 DEYVKAKQRIFTH---AKTWILN------RQQQDTWPHPVTGKLMTFGNDSHPKHFGLLS 258

Query: 263 WKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                    + V   G  +         G H   N+   L +   +  D++ A++A+  F
Sbjct: 259 GNIDRVSGPVAVTFDGSVVLRADQLQLQGIHNLVNVQAALALCQAIDIDIEAAVRAVKEF 318

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R     +      +++S   N  +  AA+  L    P   GR + + G + +
Sbjct: 319 ---KGLPHRCELVSDNEGVLWVNDSKATNIGATAAAVEGLR---PMINGRLLLIAGGVGK 372

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             +       +L   L   +I  +   G     +      S  V   +++        S 
Sbjct: 373 GADF-----RELQSTLERVDI--LLTIGEDGPRIGQLFNGSRQV---KSLQQAVELAASL 422

Query: 441 LVDGDVVVV 449
           +  GD+V++
Sbjct: 423 VQTGDMVLL 431


>gi|313500439|gb|ADR61805.1| MurD [Pseudomonas putida BIRD-1]
          Length = 446

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 130/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA IIAI+GS  K+T   ++    +   K  A  G+          L 
Sbjct: 94  LSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP-----ALD 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D++  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 149 LLADDIELYVLELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +      +  ++FG +   DF+    ++   + ++  
Sbjct: 205 RGARQ---VVVNRQDALSRPLPVE-----GRPCWTFGLNP-PDFKAFGLREVDGEKYLAF 255

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +        +  ++AL  F     R +  R   
Sbjct: 256 EFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGLAHRCQWVR--- 312

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      D+S   N   + AA++ +  +    EG+ + + G   +  E + +    +  
Sbjct: 313 ERNGVNWYDDSKATN---VGAALAAIEGLGADIEGKLVLIAGGDGKGAEFT-ALREPVKR 368

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L +AL  ++ +   +T+D            GD V++
Sbjct: 369 FCRA-----VVLLGRDAERLAEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLL 418


>gi|212709986|ref|ZP_03318114.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
 gi|212687395|gb|EEB46923.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
          Length = 447

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 130/373 (34%), Gaps = 34/373 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    +  V   + + P    F + E  
Sbjct: 93  VLAVAGTHGKTTTAGMLAWILQDCGYEPGFLIGGVPGNFDVSSQIGKSP----FFVIEAD 148

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +E I      +   +  +G IF+ 
Sbjct: 149 EYDCAFFDKRSKFVHYSPKTLILNNLEFDHADIFENLEAIQKQFHHLVRIVPSSGKIFMP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +DS  + +         + +      +N ++     K   + S  +V  Q + + EV  
Sbjct: 209 SNDSNLKQVMNMGCWSEQELV-----GENGEWHA--VKLNHDGSQFDVYYQQEKVGEVNW 261

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  QN LM +     +      A  AL  F       +R      +   ++ D+ 
Sbjct: 262 SQVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINAR---RRLELRGVENEVSVYDD- 317

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R IAVL    E    +    I   ++         V
Sbjct: 318 FAHHPTAILATLEALRS-KVGGTSRIIAVL----EPRSNTMKMGISKNDIAPALGRADEV 372

Query: 405 WLSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---- 457
           +L    ++  +   +         +   +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLFQPANIPWMVTEIAEHCVQPARWHADIDALANMVIETAQPGDHILVM-SNG-GFGGIH 430

Query: 458 YRLINLLLEEFPA 470
            +L+  L  +  A
Sbjct: 431 EKLLAGLKRKAEA 443


>gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 502

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 100/307 (32%), Gaps = 24/307 (7%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 +   G   + +S  G            + V T +A  HL     ++   +AKA 
Sbjct: 176 TLAAFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKAR 235

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +FE            DD F   L A    + +  +    ++  ADF           +  
Sbjct: 236 LFEPGRCAAAAV-GVDDEFGRRLAA---TVTVPRVTFSSRTTAADFHASAVHADEGGTSF 291

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +   G    V    +G H   N L  +  +++   D+D+A+  +       GR +    
Sbjct: 292 TLHGAGARKPVRLRLLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVPGRLE---- 347

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A++ G   L    Y  NPA  +     L  ++    GR IAV+G     GE      + L
Sbjct: 348 AVDAGQPFLAFVDYMHNPAGQRRLFPYLRSLT---RGRVIAVVGA---TGERDPGKRVPL 401

Query: 393 AEVLSLYNISHVWL----SGFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV 442
               + +  + +             L++ + R         V          +   +   
Sbjct: 402 GATAARFADTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTLAA 461

Query: 443 DGDVVVV 449
            GDVVVV
Sbjct: 462 PGDVVVV 468


>gi|28897088|ref|NP_796693.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363959|ref|ZP_05776698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260896370|ref|ZP_05904866.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|28805297|dbj|BAC58577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085196|gb|EFO34891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308112565|gb|EFO50105.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 452

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 142/394 (36%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQALTDVLER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F   ++ D+Q    K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 236 TEKQFS-GEDGDWQAH--KLVLDGSKFEVALQGEKVGTVEWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPELACQALGRFINTK---RRLELKGEEQGITVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LA+  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAD--SLHSADEVFLFQPDNIEWSVQDIADQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +  MD     I      GD ++V  SN 
Sbjct: 403 KQPAFVDADMDNFVAKIVERAQPGDQILVM-SNG 435


>gi|260772145|ref|ZP_05881062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
 gi|260613012|gb|EEX38214.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 137/393 (34%), Gaps = 28/393 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++  +     +   L     ++A+ G+ GKTTT  MLT 
Sbjct: 77  LVVIGNAMSRGNPCVEYVLNHNLRYSSGPQWLHDFLLQDRWVLAVAGTHGKTTTASMLTW 136

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     L+    +  F + E            +  V   P  
Sbjct: 137 ILEQCG---YQPGFLVGGVLGNFDLSARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  +E I      +   L   G +F    DS    + ++      + 
Sbjct: 194 LILNNLEFDHADIFDDLEAIKRQFHHLIRTLPGNGRVFAPQQDSALADVLSRGCWSEREF 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      +   +Q +  K   + S   V  Q + + +V    IG H   N LM +     
Sbjct: 254 I-----GQQGQWQAK--KHNPQGSQFAVYFQDQRVGDVEWSLIGDHNVNNALMAIAAARH 306

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A +AL+ F   +   +R      +   T+ D+ +  +P +++  +S L   + 
Sbjct: 307 VGVTPDLACQALASFINTK---RRLEQKGQENGVTVYDD-FAHHPTAIELTLSGLR--NK 360

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALK-DALPRSIH 423
            G  + IAV+    E    +    +    + +       V+L   + LA   D + +   
Sbjct: 361 VGSEKIIAVV----EPRSATMKLGVHKGTLAASFAQADSVYLFQPNELAWSVDEVAQQCS 416

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              + S  +D L   I ++   G  ++V  SN 
Sbjct: 417 SPAYVSNNIDDLVERICAAAKPGTHILVM-SNG 448


>gi|260599417|ref|YP_003211988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
 gi|260218594|emb|CBA33861.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 459

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 105 VVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +   G I    
Sbjct: 162 YDCAFFDKRSKFVHYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIWPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + +V   
Sbjct: 222 NDINLKQVLAMGCWSEQEQL-----GEQGRWQAK--KLTNDASKWEVWLDGECVGQVEWQ 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  QN L  +     +      A +AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNAR---RRLELRGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R IAVL      M  MG         L          
Sbjct: 331 AHHPTAILATLAALRG-KVGGTARIIAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + DA  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLFQPHHIPWQVAEVADACIQ--PAHWSADIDTLVEMIVKTAQPGDHILVM-SNG-GF 438

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++    Q
Sbjct: 439 GGIHQKLLDALAKKAEKAQ 457


>gi|163752979|ref|ZP_02160103.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
 gi|161326711|gb|EDP98036.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
          Length = 446

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 112/349 (32%), Gaps = 36/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A I+ ITGS GKTTT  +    L   +      G+  +     +         D  + 
Sbjct: 102 TDAMIVGITGSNGKTTTTMLTHHVLKEGELNVGVAGNMGDSFAKQV----AEQSYDTYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I       +P IA+IT I P HL  +    E   ++K  I     K   + 
Sbjct: 158 ELSSFQLDGI----IDFKPRIAIITNITPDHLDRYDYKFENYIASKFRIAMNQTKDDYLI 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD        K         +S          L           + + +Q K++ + 
Sbjct: 214 YDADDEVVTNWMKKHPVKSTLIPFSLKNKLENGAYLENEN-------IILTIQNKTITMP 266

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N +    +  +L     T  +++S F   E    R    L       
Sbjct: 267 TDSLALEGKHNVKNAMAASAVAQLLNIRKQTIRESMSGFQGVE---HRLEKVLKIQNVQY 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +   A+  ++  +    G            G    + + DL  ++    +
Sbjct: 324 INDSKATNINATYYALESMTTQTVWIVG------------GVDKGNDYSDLLPLVHE-KV 370

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             +   G     + ++  R   +    T M+            GD V++
Sbjct: 371 KAIICLGVDNSKIIESFGRVADLMVETTSMEEAVKIAHKIAEKGDNVLL 419


>gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 467

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 104/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I        +P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLELPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|293370473|ref|ZP_06617026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CMC
           3f]
 gi|292634465|gb|EFF53001.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CMC
           3f]
          Length = 458

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 131/368 (35%), Gaps = 42/368 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   +   +  + + G+ GKTTT  M          +  A +G  + + G  L L++
Sbjct: 101 RAQVLGTITHSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAFLGGISKNYGTNLLLSQ 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E       E     H + P++ VIT+  P HL  +   +    +      
Sbjct: 161 TSPYT---VIEA-----DEFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTT 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + +       + +  +        +Y++ + +  DF     +  + + +++  
Sbjct: 213 LIQPGGALII------RKGISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFV 265

Query: 276 LQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                +  +  GI      +N +  + +  +     +   + ++ F   +   +R+   +
Sbjct: 266 APDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P+ +K ++  + ++  + + +  A+      +   ++ F+ D A+
Sbjct: 323 KNDRIVFLSD-YAHHPSEIKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFAD 377

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------ 439
                    ++ +Y      + G     + D L   I     +  + +   ++       
Sbjct: 378 SLSLLDEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK-KEEILNILKDKNIEVL 436

Query: 440 -SLVDGDV 446
            +L  GD+
Sbjct: 437 ITLGAGDI 444


>gi|197116887|ref|YP_002137314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
 gi|226711912|sp|B5EBP9|MURD_GEOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197086247|gb|ACH37518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 116/344 (33%), Gaps = 29/344 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            KA ++AITG+ GKTTT  +      +        G+  N +   + LA    +V   + 
Sbjct: 106 IKAPMVAITGTNGKTTTTTLTGEIFKACGFETFVGGNIGNPL---IELAESGQEVSRVVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +       RP +AV+  I   HL  +   +E   AK  IFE         L
Sbjct: 163 ELSSFQLEGVE----SFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFENQTADDFAVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD       +K  A            +   ++        +   +    +G  ++   
Sbjct: 219 NIDDPLVAACASKLKAQLFPMSRLHELEEGISYRDGFITFSHKGKVLRFGTEGFKLK--- 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N++ +L    ++  D D A +A+  F   +G   R             ++S
Sbjct: 276 ---GVHNLDNIMASLASTLLMRCDGDCAYEAVKNF---KGLPHRMELVEEIDGVAYYEDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S+  ++                + G   + G             L    +SH+ 
Sbjct: 330 KGTNVGSVVKSLESFDSG-------ITLIAGGKDKGGSYEP------LAPLVESRVSHLV 376

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     + +AL      H +ET++      +     G VV+ 
Sbjct: 377 LIGEAKARMNEALGSLTDTHLAETLEEAVEISRRLTKPGGVVLF 420


>gi|260878003|ref|ZP_05890358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308089815|gb|EFO39510.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
          Length = 452

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 142/394 (36%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQALADVLER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F   ++ D+Q    K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 236 TERQFS-GEDGDWQAH--KLVLDGSKFEVALQGEKVGTVEWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPELACQALGRFINTK---RRLELKGEEQGITVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LA+  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAD--SLHSADEVFLFQPDNIEWSVQDIADQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +  +D     I      GD ++V  SN 
Sbjct: 403 KQPAFVDADIDNFVAKIVERAQPGDQILVM-SNG 435


>gi|328471888|gb|EGF42765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 10329]
          Length = 452

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 141/394 (35%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +       G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQALADVLE----CGCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F   ++ D+Q    K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 236 TERQFS-GEDGDWQAH--KLVLDGSKFEVALQGEKVGTVEWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPELACQALGRFINTK---RRLELKGEEQGITVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LA+  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAD--SLHSADEVFLFQPDNIEWSVQDIAEQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +  +D     I      GD ++V  SN 
Sbjct: 403 KQPAFVDADIDNFVAKIVERAQPGDQILVM-SNG 435


>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Rhodanine Inhibitor
 gi|306991519|pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
           5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
           Ligase
          Length = 439

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDDECELY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +A   I+E       
Sbjct: 155 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYEN---AKV 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 208 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 256

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 364 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 409


>gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 454

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 144/400 (36%), Gaps = 42/400 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +   +  G  +VVV+  +        I V      +  + ++  A RL  KA I AITG+
Sbjct: 61  VTDELLNGTEMVVVSPGISM---DSDIVVLSKSKGIDVIGEVEFAYRLS-KAPIYAITGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +L     +        G+    +      A      D  + E+    L  I+
Sbjct: 117 NGKTTTTSLLGEIFKASGVKTYVAGNIGYPLVEAAINANAE---DVIVAEISSFQLETIK 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 +P I+ I  I P HL+    +E     K  IFE         LNYDD     L 
Sbjct: 174 EF----KPVISAIINITPDHLNRHKTLENYIEIKGRIFENQTADQFTVLNYDDKNISSLF 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHM 292
            K+       ++ F ++     +  ++    E   + +   G+   ++     +  G H 
Sbjct: 230 KKAKC----NVFPFSRN-----RALEYGTYLENGKIIISANGEKSTIIDIEDIYIPGNHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N ++   +  +   D+    + L  F   E    R     N       ++S   NP +
Sbjct: 281 VENAMVASTMAYLAGIDIKVISETLRTFKGVE---HRIEFVRNVNGVKYYNDSKGTNPDA 337

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCE---MGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              AI  +       +G  I + G   +     E + SF   + +++ L     +     
Sbjct: 338 AIKAIEAM-------KGPIILIAGGYDKGVSFDEFTASFKGRVKKLILLGETKDLI---- 386

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  A+K+       V + E++D       ++   GD V++
Sbjct: 387 YKSAIKEGYSED-DVIFVESIDDAVYAAYNAAKPGDNVLL 425


>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
 gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
          Length = 492

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 111/347 (31%), Gaps = 20/347 (5%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVD---VDFGI 164
            I A+TG+ GK+T        L          G+             + P D       +
Sbjct: 128 KIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGNLGTPFSDAACECFKFPSDDPPYQVTV 187

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L     L     P + VI  ++P HL     +E     K  +FE ++ +    
Sbjct: 188 LEVSSYQL----ELPGSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSI 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + D F   +  K ++   K           D Q R+       +  E +L        
Sbjct: 244 IPHADEFLRKVAYKYNSGSTKAWLGALPGIQLDSQARRAVVVVPTTKAEARL----YLSG 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H AQN      +   L   VD      ++        +      ++     I++
Sbjct: 300 LKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWIND 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVL-SLYNIS 402
           S   N  +    I  L+          + +LG + ++ +   S     L+++L +   I 
Sbjct: 360 SKATNVDAAYTGIKGLADRKA------VILLGGLAKVLDQDGSLGFKKLSDLLQNHRAIV 413

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                G  +         SI    S TM+      +     GD++++
Sbjct: 414 TFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDIILL 460


>gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
 gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
          Length = 438

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 135/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAERELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGINMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++  LN     
Sbjct: 258 NVKEMTLTGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLVLNHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +  + L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P +     +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPEA--AEQTETMEQAMRLLAPRVKPGDMVLL 410


>gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus CB15]
 gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus NA1000]
 gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus CB15]
 gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus NA1000]
          Length = 471

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 141/422 (33%), Gaps = 33/422 (7%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR  A  E F  +     D   F   A+    G+ + +     ++         V   + 
Sbjct: 44  SREAAAAEGFAVVDLQAADWSQFA--ALMLSPGVPLSHPKPHWTVEKARAAGVEVLGDVE 101

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
              +   AA    +  IIAITG+ GK+TT  ++    +S  +     G+    +      
Sbjct: 102 LFARTVNAAPAHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRVGGNIGLGVLG---- 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                     + EL    L     LT  ++P   V+  I+P HL    G++   +AK  I
Sbjct: 158 LEDMHGGAVYVLELSSYQLD----LTSSLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRI 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSW 271
           F    K  T  +  DD++ + +  +  A   +TI+  S GK+        +         
Sbjct: 214 FLNQGKGDTAIIGVDDAWCQQICTEITAANRRTIWPISAGKAMGRGVYALQGVLYDATGE 273

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V++    +       G H  QN          +   +  A+  L  F    G   R  
Sbjct: 274 RVVEVAD--ILRARSLPGRHNWQNAAAAYAAARAIGISMQDAVDGLMTF---PGLAHRME 328

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG--ELSQSFH 389
                G    +++S   N     AA   +S            + G + + G  +  +   
Sbjct: 329 TVGKIGKVRFVNDSKATNAD---AARQAMSSYPKFYW-----IAGGVAKAGGIDDLKDLF 380

Query: 390 IDLAEVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSLVD 443
             +A+   +   +  +   L+G     L   L +++   Y++     +   + +  +   
Sbjct: 381 PRIAKAYLIGEAAEPFSWTLAGKAECVLSGTLEKAVQQAYADAAASGEEAIVLLSPACAS 440

Query: 444 GD 445
            D
Sbjct: 441 FD 442


>gi|261338918|ref|ZP_05966776.1| hypothetical protein ENTCAN_05116 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318743|gb|EFC57681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 438

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 129/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +    +  
Sbjct: 101 REAQAPIIAITGSNGKSTVTTLVGEMAKAAGMNVGVGGNIGLP-----ALMLLDKGCELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTTSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG +   D+ L    +   ++W+ V+ +     
Sbjct: 209 CVVNADDALTMPVRG-----ADDRCISFGITMG-DYHL---NRQLGETWLRVKGEKVLNV 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     ++++A        G   R++ AL       I
Sbjct: 260 KEMKLSGQHNYTNALAALALADAVGLPRSSSLQA---LTTYSGLAHRFQLALEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H +G    +LG   +  + S      L + L+  NI 
Sbjct: 317 NDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLKQYLAGDNI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 366 RLYCFGRDGGELAQLRPE--IAEQTETMEQAMRLIAPRVQPGDMVLL 410


>gi|217031839|ref|ZP_03437342.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298735536|ref|YP_003728057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
 gi|216946491|gb|EEC25093.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298354721|emb|CBI65593.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
          Length = 447

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 137/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHESIENYRDAKNSFF---KDEGLKVINRDETNALFNPINAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLTPSISASLCYQQDLRDPNLKEIAL------MHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++T    L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLETIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++   ++  V S Y    V  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPEMGAVASYYAHKIVLTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GISNSSKVVVEKDRKKAILSALENLKDDEVLLILG 415


>gi|305664536|ref|YP_003860823.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
 gi|88708553|gb|EAR00789.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
          Length = 444

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 140/398 (35%), Gaps = 43/398 (10%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSV 117
           +K +  V++N D+V     +   V  + ++   L    +++  AAR    ATII ITGS 
Sbjct: 53  EKHSKSVILNADVVMKSPGIPDTVPLIKELKEKLIPVISEIEFAARY-IDATIIGITGSN 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +               G+  +     +       D D  + E+    L  I  
Sbjct: 112 GKTTTTMLTNHIFKEEGLDVGMAGNIGDSFAKMV----AENDHDNYVLEISSFQLDGI-- 165

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             +  RPHIA+IT I P HL  +    E   ++K  I E   K   +  + DD       
Sbjct: 166 --NDFRPHIAIITNITPDHLDRYEYKFENYVASKFRIAENQSKEDYLIYDADDEVIVEWL 223

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---HHGIGYHMA 293
            K     I   +S          L+  +       + ++   +++E++       G H  
Sbjct: 224 NKHPVKSILMPFSIKNELTQGAYLKNDR-------IIIKTNNETLEMMTSTLALEGKHNL 276

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +       ++    +T   +++ F    G   R    L       I++S   N  + 
Sbjct: 277 KNTMAAATAAKLIGIRKETIRASIANFQ---GAEHRLEKVLKIQHVQYINDSKATNVNAT 333

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+  +S  +    G            G    + + +L  ++    +  +   G     
Sbjct: 334 YYALDSMSAPTVWIVG------------GVDKGNDYKELMPLVRE-KVKAIICLGNDNSK 380

Query: 414 LKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           + DA    + +   ET  M+            GD V++
Sbjct: 381 IVDAFGNVVDLM-VETYAMEEAVKVAYKIAERGDTVLL 417


>gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 126/385 (32%), Gaps = 57/385 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  IIA+TG+ GKTT   M+   L           S    I   L +             
Sbjct: 479 RIPIIAVTGTNGKTTVVRMINKVLLENMVRVGMTSSEGVFINDKLLVTGDMTGPQSAQIV 538

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
               DV   + E   +  G +R         +AVIT ++  HL  +    +EE+A  K  
Sbjct: 539 LRHPDVQAAVLE--TARGGILRAGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKML 596

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW- 271
           + E + K G + LN DD        ++ A     +  F          +         + 
Sbjct: 597 VAERVNKYGYVVLNADDPIVAGFDKRTEA----KVIYFSLDPANRKLCKHIALGGTGIFV 652

Query: 272 ----------MEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                      +VQ   + +++ +   G   H  +N+L  +G    L        K+L  
Sbjct: 653 DKNQIKLGQGFDVQQICKIQNIPLTWSGKAKHNIENILAAIGACWALGYSASQMRKSLKK 712

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F  +                T+I + Y  N A +K AIS L QI    + RRI   G + 
Sbjct: 713 FGSENKDNYGRLEYYEVNGVTIILD-YAHNCAGLKEAISTLRQI----KKRRII--GCIG 765

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGF-----HVLALKDALPRSIHV 424
             G+         A + +      +++          +G      H   +K         
Sbjct: 766 LPGDRRNEMVKKYARIAAQ-GFDDIFIKEDLCKRGRQTGEIAEILHNELIKAGFQEKNLK 824

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              +  +     I S    GD+VVV
Sbjct: 825 KVLDEKESFRQAI-SQAEPGDIVVV 848


>gi|255322234|ref|ZP_05363380.1| Mur ligase middle domain protein [Campylobacter showae RM3277]
 gi|255300607|gb|EET79878.1| Mur ligase middle domain protein [Campylobacter showae RM3277]
          Length = 478

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 122/346 (35%), Gaps = 34/346 (9%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFG 163
             +  II IT S GKT+ K  L   L +         S N   G +      + V     
Sbjct: 158 MPELKIIMITASFGKTSIKNFLFELLKNDFVCRKTPRSVNTLAGLIQDVNNELAVGTQIY 217

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  +T  + P IA++  I   H+  F  +E I + K E           
Sbjct: 218 IAEAGARLKGDIAQITEFLSPQIAIVGEIGAQHIEYFKTLENIRATKLEALGSKRLEKAF 277

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                        + + A   + I  +      D  L   +   +    ++       E 
Sbjct: 278 V-----------HSSTQANESEKIEIY------DSNLSGVEASLDGIKFKL----GEREF 316

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   A N+ + +     L  D      AL+     E R +R     + G   +ID
Sbjct: 317 ASPLLGKFNAANLAVCVKTALYLGLDEARIAAALARLKNVEHRLERI----DAGGKIIID 372

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   M A+  +++      EGR++ V   + E    S   +  L+++++      
Sbjct: 373 DGFNGNFNGMSASYELVAS----YEGRKVLVTPGIMES---SDEENEKLSKIINKTFDIV 425

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  S  + +AL   L +   V   +    L   +  +   GD+++ 
Sbjct: 426 MLTSSLNAVALLKHLSK-PKVIVIKDKSKLQEALAQNTKAGDLILF 470


>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
 gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
          Length = 445

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 96  FAGRYTDSKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGNSLALQV----AEDPH 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I +   K
Sbjct: 152 AVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTK 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++          K  +E + + ++    
Sbjct: 208 DDAFIFWNDDPIIAREIAKRHPKA--TLYPFAETHEN-----GVKGYTENNQVVIETVNG 260

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     I+    +    +LS F   E    R    L  
Sbjct: 261 TFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE---HRLEKVLRV 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 318 RGVDYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEI-EEL 364

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + ++  + +M+            GD V++
Sbjct: 365 VNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           felis URRWXCal2]
 gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
           URRWXCal2]
          Length = 449

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 117/363 (32%), Gaps = 50/363 (13%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             + +IP+    D+L                  IA+TG+ GK+TT  +++  L+S    Y
Sbjct: 83  AKNFNIPIISDIDLL---------FEKSKNLNFIAVTGTNGKSTTTALISHILNSNGLDY 133

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+            +     D  I EL    L  ++  T      IAV+  I P HL
Sbjct: 134 PVAGNIGVP------ALQAKASKDGYILELSSFQLDLVKTFTA----KIAVLLNITPDHL 183

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--N 255
                +    +AK++IF+ ++K     +N D+ +   +           +  F  +K   
Sbjct: 184 DRHQDMTGYIAAKSKIFDRMDKDSYAAINIDNYYCREIFMLLQQEQRIKLIPFSVTKILK 243

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               +   K        ++           +  G H  +N+  +  +  I+  +    ++
Sbjct: 244 NGISVVGDKINDNDISYKLPFN-------KNLQGTHNCENIAASYAVAKIIGVESKKILE 296

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           ++S F     R +      N GF+   ++S   N  S   +I  L  I     G      
Sbjct: 297 SISSFQSLPHRMQYIGSINNIGFY---NDSKATNAISAVQSIKALDNIYWLAGGI----- 348

Query: 376 GDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
               E G           E +  Y   I   +  G             +     + ++  
Sbjct: 349 --PKEGG----------IEEIKPYFSKIKKAYFYGQAKEIFAKTAKNIVDFVICDNLEQA 396

Query: 434 FLF 436
           F  
Sbjct: 397 FDL 399


>gi|26988069|ref|NP_743494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida KT2440]
 gi|38258004|sp|Q88N78|MURD_PSEPK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24982793|gb|AAN66958.1|AE016324_8 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           KT2440]
          Length = 450

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 130/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA I+AI+GS  K+T   ++    +   K  A  G+          L 
Sbjct: 98  LSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP-----ALD 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D++  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 153 LLADDIELYVLELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +      +  ++FG +   DF+    ++   + ++  
Sbjct: 209 RGARQ---VVVNRQDALSRPLPVE-----GRPCWTFGLNP-PDFKAFGLREVDGEKYLAF 259

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +        +  ++AL  F     R +  R   
Sbjct: 260 EFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGLAHRCQWVR--- 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      D+S   N   + AA++ +  +    EG+ + + G   +  E + +    +  
Sbjct: 317 ERNGVNWYDDSKATN---VGAALAAIEGLGADIEGKLVLIAGGDGKGAEFT-ALREPVKR 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L +AL  ++ +   +T+D            GD V++
Sbjct: 373 FCRA-----VVLLGRDAERLAEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLL 422


>gi|312888796|ref|ZP_07748359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298671|gb|EFQ75777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
          Length = 461

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 117/361 (32%), Gaps = 36/361 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL      A   + A +I ITGS GKTTT  +    L +        G+        +  
Sbjct: 105 ALISEIEFAGRYTDAKMICITGSNGKTTTTSLTYHILKNAGLNVGLAGNIGKSFAYQV-- 162

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAE 212
                  D+ + E+    L  +    +  +  IAV+  I P HL  +   +E   ++K  
Sbjct: 163 --ATEQFDYYVLEISSFMLDNM----YKFKADIAVLLNITPDHLDRYDYKMENYTASKFR 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +            DD   E +K  +       + +F   K  +          +Q  +
Sbjct: 217 IAQNQTAADYFIYCADDP--ETIKGIAEREIEAQLLTFSIEKKVERGA-----YLDQQDL 269

Query: 273 EVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +    +  ++  + +   G H   N + +     +L     T   ++  F   E    R
Sbjct: 270 IINATLEHFKMSLNKLALQGKHNIYNSMASGITSKVLDIRNKTIRDSMEDFQNIE---HR 326

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     + I++S   N  S   A+  +S          I +LG + +  +      
Sbjct: 327 LEFVGKISGISFINDSKATNVNSTWYALESMSN-------NVILILGGVDKGNDY----- 374

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVV 448
            ++ + L    +  +   G     + DA    + V   + +              GD V+
Sbjct: 375 -NMLKELVKQKVKSIVCMGKDNNRIHDAFEDDVDVIVNTSSASEAVQVAYHLATKGDTVL 433

Query: 449 V 449
           +
Sbjct: 434 L 434


>gi|168211219|ref|ZP_02636844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|182626019|ref|ZP_02953782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
 gi|170710774|gb|EDT22956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|177908726|gb|EDT71237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
          Length = 458

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 118/352 (33%), Gaps = 49/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----VEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            ++   + L  ++       +  F   K A  D   +  K         + + GK +   
Sbjct: 228 DENEITKNLDKEAKG----KVVRFSSKKTAGEDAYYKDGK---------LYVHGKEVCKK 274

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              I  G H  +N L    +       +++  K    F    G   R             
Sbjct: 275 DDIIIKGMHNVENYLAAF-LAVYDEVSIESMKKVAETFG---GVHHRCEFIREVDGVKYY 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  + P    A +    +         I + G   +        +           I 
Sbjct: 331 NDSIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIK 377

Query: 403 HVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + L G     +K A  R        + V+  E+++ +    +S   +GD++
Sbjct: 378 AIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDII 429


>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 458

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 142/399 (35%), Gaps = 40/399 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I   V     LVVV+  +  S   L   V      +  + ++ +A R      I+AITG+
Sbjct: 62  IPDEVIDRVQLVVVSPGVPLSKRPL---VLAHKKGVEVIGEIELAYRFCKSKNIVAITGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L    +     G+        +       +    + E+    L  I+
Sbjct: 119 NGKTTTTTLVGEILKKQYEDVVVCGNIGLPF---IDTVETSSENTIFVLEISSFQLETIK 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L 
Sbjct: 176 YF----KPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNVTRDLI 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHM 292
             +       +  F K+K    Q        E   +    +GK+ EV+        G H 
Sbjct: 232 GLAKG----NVIVFSKTKT---QFENV-VFVENDVIYFTFEGKTQEVMKKDEIFIPGQHN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  +        + DT  + L  F   E    R             ++S   N  +
Sbjct: 284 LENALAAISCTLPFGIEKDTIEQVLKTFRGVE---HRIEFVAEINGIKFYNDSKGTNTDA 340

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + AIS             I + G      +  +SF   ++ +     +  V+L G    
Sbjct: 341 AEKAISAFKN-------PIILIAGG----YDKGESFEKFVSLIAKR--VKKVFLLGQTKH 387

Query: 413 ALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
            +   L +  + ++    T+         S  +GDVV++
Sbjct: 388 KIASELEKIGYKNFELVSTLKEAVRKSFESAQNGDVVLL 426


>gi|294671080|ref|ZP_06735935.1| hypothetical protein NEIELOOT_02788 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307188|gb|EFE48431.1| hypothetical protein NEIELOOT_02788 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 458

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 125/379 (32%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 103 HQHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSK 162

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  A++  +   H   F+ +E I +    +   +
Sbjct: 163 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLEAIQTQFHHLVRTV 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG          +    +     +V L 
Sbjct: 223 PSEGLIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGGVNADGSFDVLLD 274

Query: 278 GKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK    V    +G H   N L  +        D+ TA +ALS F   +   +R       
Sbjct: 275 GKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTV 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 332 NGITVYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAAL---- 383

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL +   V+    G      +   P    +H  +  D     I      GD ++V 
Sbjct: 384 --PASLNDADQVFCYAGGVDWDVAEALAPLGGKLHVDQDFDTFVAEIVKHAEAGDHILVM 441

Query: 451 SSNSCGF----YRLINLLL 465
            SN  GF     +L+  L 
Sbjct: 442 -SNG-GFGGIHGKLLEALK 458


>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 458

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 109/350 (31%), Gaps = 41/350 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  I AITGS GKTTT  ++   L +        G+    +   +         D  + E
Sbjct: 116 RRPIYAITGSNGKTTTTTLVGEMLKASGYHPIVAGNIGTPVCDVV-----DQPGDLLVLE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L      TH   P    +    PAHL      E    AK ++F          LN
Sbjct: 171 VSSFQLDG----THTFHPRGGALLNFYPAHLDYHGTYEAYQQAKWKLFANQTPDDVAILN 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D +       +  A     +  F   + A F     +         V ++G+    +  
Sbjct: 227 WDQALVRDRAGELAA----RVRGFSL-EGAPFD----EGVGVIDGALVAVRGRERTPILP 277

Query: 287 -----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN      +     A V+   + L+ F   E    R            
Sbjct: 278 VDQVALPGRHNLQNAAAAAALALAAGASVEAVARVLATFQGVE---HRLEFVREVSGVRY 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   NP + + A+            R +  +    + G        D++  +     
Sbjct: 335 YNDSKATNPDAARQALRSFE--------RGVVWIAGGLDRGISFDPLLPDISGRVRAA-- 384

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
               L G     L++ L R+      ++ +M+            GDVV++
Sbjct: 385 ---VLLGETKEKLREVLARAGVSTCAFAASMEEAVREASRMAEPGDVVLL 431


>gi|110801958|ref|YP_699716.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens SM101]
 gi|118595651|sp|Q0SQ91|MURD_CLOPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110682459|gb|ABG85829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens SM101]
          Length = 458

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 121/350 (34%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----VEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++   + L  ++    ++  +S  K++  D   +  K         + + GK +     
Sbjct: 228 DENEITKNLDKEAKGKVVR--FSSKKTEGEDAYYKDGK---------LYVHGKEVCKKDD 276

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            I  G H  +N L    +       +++  K    F    G   R             ++
Sbjct: 277 IIIKGMHNVENYLAAF-LAVYDEVSIESMKKIAETFG---GVHHRCEFIREVDGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  + P    A +    +         I + G   +        +           I  +
Sbjct: 333 SIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIKAI 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     +K A  R        + V+  E+++ +    +S   +GD++
Sbjct: 380 VLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDII 429


>gi|239994466|ref|ZP_04714990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii ATCC
           27126]
          Length = 452

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 143/423 (33%), Gaps = 56/423 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +  ++   S P + +D++L                 +I ++G+
Sbjct: 67  IGNAMSRGNPAVEYV--LNRNLPYTSGPQWLLDNLLK-------------DRWVIGLSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L          IG    + GV   +   P    F + E         
Sbjct: 112 HGKTTTSSMVAWILEHAGLNPGYLIGGVPENFGVSARVGESP----FFVIEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP   VI  +   H   F+ +  I +    +   + + G I    +    E
Sbjct: 168 DKRSKFVHYRPKTLVINNLEFDHADIFADLGAIQTQFHHLVRMVPENGLILTPNNTPAIE 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
            +  K      +   S GK  +A+          + S   V   G     V    +G H 
Sbjct: 228 DMLKKGCWSSRQ---SLGKEWHAEL------LKKDGSEFNVLHNGVIAGTVTWALVGQHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N LM +         +  AI ALS F   +   +R          TL D+ +  +P +
Sbjct: 279 VDNALMAIAAAHHAGVTLPDAIDALSFFKNVK---RRMEVKGEVNNITLYDD-FAHHPTA 334

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLS-- 407
           +   +  L      G  R +AVL    E    +     H D LA   S      V+L   
Sbjct: 335 IATTLDGLR--KKVGNARILAVL----EPRSNTMKMGVHKDTLAN--SWQKADEVYLYEP 386

Query: 408 -GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLIN 462
            G     +      +   H    ++ +   + +    GD ++V  SN  GF     R+++
Sbjct: 387 EGMDWSLVDSVAHSNAPTHCFRDVEKIVQGVCNVAQPGDHILVM-SNG-GFEGIHGRILD 444

Query: 463 LLL 465
            L 
Sbjct: 445 ALK 447


>gi|222152567|ref|YP_002561742.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus uberis 0140J]
 gi|222113378|emb|CAR41017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus uberis 0140J]
          Length = 444

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 124/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 108 GVAGAHGKTSTTGLLSHVLKNITDTSFLIGDG---------TGRGSANAQYFVFE----- 153

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI+++ SA  +  + ++K   +F+  +D  
Sbjct: 154 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIDDVFSAFNDYAKQVKK--ALFVYGEDEE 211

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + + A +       IY +G     DF      + +  S  +V+ +   +   H    G 
Sbjct: 212 LKKISANA------PIYYYGFEDYNDFVAYDITRTTNGSDFKVKHKDNVIGSFHVPAYGK 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + I   D+D   K +  F   +      R        T+I + +  +P
Sbjct: 266 HNILNATAVIANLYIAGIDMDLVAKHMLTFSGVK-----RRFTEKIINETIIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D  +    + S +     +  +Y 
Sbjct: 321 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNEADSVY-----LAQIYG 375

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 376 SAREVDKGEVKVEDLAAKIIKPSKVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 429


>gi|161504752|ref|YP_001571864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866099|gb|ABX22722.1| hypothetical protein SARI_02875 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 438

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATVLNVTEDHMDRYPFGLQQYRAAKLSVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLARYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAQLAALRPE--IAEQTETMEEAMRLLAPRVQSGDMVLL 410


>gi|110801072|ref|YP_697147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens ATCC 13124]
 gi|168215153|ref|ZP_02640778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
 gi|118595650|sp|Q0TMJ3|MURD_CLOP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110675719|gb|ABG84706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens ATCC 13124]
 gi|170713450|gb|EDT25632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
          Length = 458

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 118/352 (33%), Gaps = 49/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----VEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            ++   + L  ++       +  F   K A  D   +  K         + + GK +   
Sbjct: 228 DENEITKNLDKEAKG----KVVRFSSKKTAGEDAYYKDGK---------LYVHGKEVCKK 274

Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              I  G H  +N L    +       +++  K    F    G   R             
Sbjct: 275 DDIIIKGMHNVENYLAAF-LAVYDEVSIESMKKVAETFG---GVHHRCEFIREVDGVKYY 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  + P    A +    +         I + G   +        +           I 
Sbjct: 331 NDSIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIK 377

Query: 403 HVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + L G     +K A  R        + V+  E+++ +    +S   +GD++
Sbjct: 378 AIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDII 429


>gi|116750887|ref|YP_847574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699951|gb|ABK19139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 446

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 139/438 (31%), Gaps = 66/438 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKL----------AVAARLR 105
           +     KG  L +        +    I V  GV  +L  L +              A  +
Sbjct: 43  LDELRAKGCRLRLGEHHPDDFLNVDQIIVSPGVPSLLEPLREARLRGIEIVGEFEWAWRQ 102

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGI 164
             A +IA+TG+      K   T  +  + K          +IG PL+   +  D VD  +
Sbjct: 103 VDAPVIAVTGTN----GKTTTTALIGEMIKASGTRVFVGGNIGTPLSRWLLDGDRVDCMV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L        L RP + V+  +   HL  +   EE   +K  +F   E T    
Sbjct: 159 LEVSSFQLD----TAFLFRPEVGVLLNVTEDHLDRYRDFEEYTESKLSMFGRQESTDVAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD             G   + +  ++        +     E   + V +  K    +
Sbjct: 215 INLDDPVC----GSRPFNGKGRLLTSSRNDP------RTHAHVEDGRIVVNVPWKPEFRL 264

Query: 285 ----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N+L  +     +    +   +A   F     R +  R A   G   
Sbjct: 265 DLADLRLKGVHNEENVLAAILACLAMDVVPEAVARAAGTFGGLPHRVEWVRAA---GGVD 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             D+S   N  ++  AI          +   + +LG   ++G  +      +AE +    
Sbjct: 322 YYDDSKGTNVGAVVKAIENF-------DRPVLLLLGGRDKLGSYAP-----IAERMRTRG 369

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-------- 452
              V++ G     +   L   + +     ++G F         GD+V++  S        
Sbjct: 370 -KGVFVFGESAPRIHAELRDKVPIRLFPDLEGAFSAAVERAQAGDIVLL--SPACSSFDQ 426

Query: 453 ------NSCGFYRLINLL 464
                     F +L+  L
Sbjct: 427 YESYAQRGDHFKKLVAAL 444


>gi|56964122|ref|YP_175853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           clausii KSM-K16]
 gi|60390298|sp|Q5WFG8|MURD_BACSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56910365|dbj|BAD64892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus clausii
           KSM-K16]
          Length = 451

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 120/349 (34%), Gaps = 34/349 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A ++AITGS GKTTT  ++   L    +     G+      V   +A+      
Sbjct: 105 AYLISEAEMVAITGSNGKTTTTTLVKEMLEHSGRKPLIAGNIGT---VASEVAQKAKAEH 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L      T+  +P +AV   I  AHL      E+  +AKA I   +    
Sbjct: 162 VIVLEVSSFQLMG----TNAFQPKVAVWLNIFDAHLDYHGTREDYIAAKARIAANMGPAD 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N DD       A+  A    T+  F +       +       + +         ++
Sbjct: 218 YLVYNADDPTVVQAIARIGA----TLVPFSRIN----VVEDGAYVKDGTIFFKDEPILAL 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +NML       +  A V+     LS F   +    R +   +      
Sbjct: 270 ADAV-LPGAHNVENMLAATAAARLAGATVEQIRHVLSHFPGVK---HRLQYVGSWEGRQF 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + KAA+S  +        + + ++    + G            + SL  +
Sbjct: 326 YNDSKATNILATKAALSGFA--------KPVVLIAGGLDRGNDFDEL------LASLKYV 371

Query: 402 SHVWLSGFH-VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G      L  A   ++    +E +        +    GDVV++
Sbjct: 372 KAVVAYGETKSKLLALAAKANVQAVTAERVQDATEKAVALSQPGDVVLL 420


>gi|288925521|ref|ZP_06419454.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
 gi|288337737|gb|EFC76090.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
          Length = 458

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 146/415 (35%), Gaps = 47/415 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I HA +K A  +VV T  + +        F  +       +  V   L      + + 
Sbjct: 61  DEIPHACKKPASTLVVYTPAIPADHKEL--TFFREGGFEIEKRAQVLGTLTRTHKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    +   ++   A +G  + + G    L+      DF + E       
Sbjct: 119 GTHGKTTTSTMCAHIMHQSQQDCNAFLGGISKNYGTNYILS---DKSDFVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H +RP ++VIT+  P HL  +   E    +     E ++  G + L       +
Sbjct: 171 EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQPGGALIL------HK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            L+ + H      +Y +   +  DF     K  + +   +     + +  V  G      
Sbjct: 225 NLEMQQHVQEGVRVYEYSLDEG-DFHAENIKIENGEITFDFISPVECVRNVMLGQPVPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +     +  +    G  +R+   +       + + Y  +P  
Sbjct: 284 IENGVAAMAMAQLNGCTAEELRYGMKTY---AGVDRRFDFKIKNDRHVFLSD-YAHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
           +  +   + ++    + R+I A+      +   ++ F+ D A  LSL         Y   
Sbjct: 340 IYQSAKSIREL---YKDRKITAIF--QPHLYTRTRDFYQDFANSLSLLDEVILCDIYPAR 394

Query: 403 HVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              + G     + D L   +    +H     + +   ++S   D DV++V  +  
Sbjct: 395 EKPIEGVTSKLIYDNLKPGVEKSMIH----KEDVLDLVKS--RDFDVLLVLGAGD 443


>gi|254670208|emb|CBA05358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha153]
          Length = 458

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIICNG---QQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAALPE------ 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I      GD ++V  SN 
Sbjct: 386 SLKGADQVFCYAGGVDWNVAEALAPLGGKLHVGKDFDAFIAEIVKHTEAGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
 gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 466

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 123/354 (34%), Gaps = 40/354 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II ITG+ GKTTT  M+    LS        + S  N      +L       D  + EL 
Sbjct: 110 IIGITGTDGKTTTSSMVEAICLSGANSREQRVFSAGNIGVPFSSLVGEMRKGDIAVVELS 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
              L          RP +AVIT I P HL  +   ++  A AK  I+    K  T+  N 
Sbjct: 170 SYQL----ERCRSFRPDVAVITNIMPDHLDRYGGSMKRYAEAKYRIYAQQRKQDTLVYNA 225

Query: 228 DDSFFELLKAKSHALG--IKTIYSFGKSKNADFQLRKWKQC---SEQSWMEVQLQGKSME 282
           DD   E L+A     G  +  +  F   +    +      C    E  W+   + G+  +
Sbjct: 226 DD---ETLRAHFEGGGAFVPQLVPFSLDRK---RASLGGACYAAIEGDWLITVVNGREEK 279

Query: 283 VVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           V+           G H  +N L  +        DV    +AL  F   E R +  R    
Sbjct: 280 VITGSGLFKRSFRGRHNLENALAAVAATRAAGVDVFPIREALRRFAGVEHRQEYVRTMH- 338

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +++ A+           G+ + + G   +  +LS          
Sbjct: 339 --GVDWINDSKATNLNALRQALDA-------TPGKLVLIAGGRDKGDDLSDLEER----- 384

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +S + + G       +A    + V  + +++      Q     G+ V+ 
Sbjct: 385 -VRQKVSVLVVFGESKAKFTEAFSSVVRVVPALSLEEAVEQAQRYASTGETVLF 437


>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
 gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
          Length = 438

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 127/349 (36%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 101 RENPAPIVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP-----ALTLLKQENQLV 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTTSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + +++QG+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVQGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFT---GLPHRFQLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALEGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGDQ 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  V+  G     L    P    +  +ETM+   + +  +L  GD+V++
Sbjct: 365 I-KVYCFGRDGEELAALRPEVSQL--TETMEQAMVLLSKNLAPGDMVLL 410


>gi|20806550|ref|NP_621721.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254478921|ref|ZP_05092283.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|20514987|gb|AAM23325.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214035143|gb|EEB75855.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 450

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 141/373 (37%), Gaps = 58/373 (15%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGV 149
            L A + L        K   + +TG+ GKTTT  ++   LS    K        N   G+
Sbjct: 31  ALMADDHLIKKLIEPLKENKVIVTGTNGKTTTSGLIAHLLSYSGRKVVHNREGANMRTGI 90

Query: 150 PLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +L         +D D  +FE+  ++L    F+ + + P++ VIT      L  F  ++
Sbjct: 91  ATSLIKSSSLTGNLDRDAAVFEVDEANLS---FVVNEINPNVVVITNFFRDQLDRFGELD 147

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSHALGI---------------- 244
            I +   +    L K   + LN DD F     E L+AK    GI                
Sbjct: 148 LIVNKVKKALSDLSKDSFVLLNADDPFTASIGEDLEAKVLYYGIEDDIKSLKSSSFEQKF 207

Query: 245 ----------KTIYSFG------------KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     K IY +G            K  + DF+        +    ++  + K   
Sbjct: 208 CPVCGTKYEYKKIY-YGHLGNYYCPNCGKKRPSLDFRASDIFLSEDGIKFKLSYKDKIFT 266

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  + +G +   N+L +     +L  D  T +KA+  + P EGR ++ +    +    LI
Sbjct: 267 VKSNLVGLYNVYNILASTSAGMLLNLDDSTILKAVENYWPIEGRLQKIQIRGKKAIINLI 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                 NP   ++ +++LSQ         I +  +  +  ++S  + ++L E LS   ++
Sbjct: 327 K-----NPVGFESTLNMLSQFDKPLNL-LILINDNYADGRDVSWLWDVNLEEFLSKAKVN 380

Query: 403 HVWLSGFHVLALK 415
           H+  SG     + 
Sbjct: 381 HIITSGLRAEDMA 393


>gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
 gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
          Length = 455

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 125/377 (33%), Gaps = 53/377 (14%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + IPV    ++ G +              +I ITGS GKTTT  M    L +  K    
Sbjct: 93  HMRIPVITEVEIAGEIAAC----------DMIGITGSNGKTTTTTMTASMLENSPKNPKA 142

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+      V   +A   +  D  + EL    L      T+  +PHIAV   +  AHL  
Sbjct: 143 AGNIGE---VASKVADASLPEDILVVELSSFQLQG----TNRFKPHIAVFLNLIEAHLDY 195

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +++ A AKA IF    K   +  N DD     L  ++ +    T   F   +  D  
Sbjct: 196 HGTMDDYAQAKARIFRNQSKDDVLIYNADDPLVSSLAEQADS----TCIPFSTQRIVD-- 249

Query: 260 LRKWKQCSEQSWM---EVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                     S++   ++ + G+ +         G +   N L          AD +   
Sbjct: 250 --------GGSYIKDGDIVVLGEVLMRRDDFSLPGDYNLSNGLAAATAAMKAGADPEQVR 301

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L+ F   +    R +           + S   N  +   A+           G RI +
Sbjct: 302 HVLASFEGVK---HRLQYVDTVNGVRYFNNSKATNVPATVKALEAF-------PGERIIL 351

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDG 432
           +    +        +  + +     ++  +   G     L +A   +    +  + T++ 
Sbjct: 352 IAGGLDRKLSFDDLYAPMGQ-----SVKGLVTYGETADKLAEAGRSAGVETILKTTTLEE 406

Query: 433 LFLFIQSSLVDGDVVVV 449
                +    + D++++
Sbjct: 407 AVRKAEEISEESDIILL 423


>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
 gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
          Length = 446

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 115/344 (33%), Gaps = 33/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GKTT   ++     +  +     G+          L  +    D  + E
Sbjct: 108 DAPIIAITGSNGKTTVTTLVGEMARAAGRRVEVGGNIGTP-----ALDLLGRGADLYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L   R L  L     A +  ++  H+  +        AK  IF G +      +N
Sbjct: 163 LSSFQLETTRELNALA----ATVLNVSDDHMDRYPDKMAYFQAKQRIFNGCQN---AVVN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD+    +     A        FG  + N D      +   E +W+        +    
Sbjct: 216 LDDALSTPM-----ARDNLRFLCFGFYRVNPD--TFSTRDDDEGTWITFGFDNLLLAEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N++  L +       +D  +  +  F   +G   R            I++S
Sbjct: 269 GLMGQHNISNVMAALALGHAAGLPMDVMLDTVKRF---KGLPHRCEFVRRVSDVDYINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +  AAI  L        G+ + + G   +  + S      LAE ++  +   V 
Sbjct: 326 KGTNVGATTAAIESL----VPTGGKIVLIAGGEGKGADFSL-----LAEPVA-AHCRAVV 375

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     +  AL   +    +  + G     +     GD V++
Sbjct: 376 LIGADAGTIATALGNRVETVNAADIAGAVHTAKKLAQPGDRVLL 419


>gi|260172408|ref|ZP_05758820.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides sp. D2]
 gi|315920704|ref|ZP_07916944.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694579|gb|EFS31414.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 458

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 131/368 (35%), Gaps = 42/368 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   +   +  + + G+ GKTTT  M          +  A +G  + + G  L L++
Sbjct: 101 RAQVLGTITHSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAFLGGISKNYGTNLLLSQ 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E       E     H + P++ VIT+  P HL  +   +    +      
Sbjct: 161 ASPYT---VIEA-----DEFDRSFHWLSPYMTVITSTDPDHLDIYGTEQAYLESFEHYTT 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + +       + +  +        +Y++ + +  DF     +  + + +++  
Sbjct: 213 LIQPGGALII------RKGISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFV 265

Query: 276 LQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                +  +  GI      +N +  + +  +     +   + ++ F   +   +R+   L
Sbjct: 266 APDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKL 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P+ +K ++  + ++  + + +  A+      +   ++ F+ D A+
Sbjct: 323 KNDRIVFLSD-YAHHPSEIKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFAD 377

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------ 439
                    ++ +Y      + G     + D L   I     +  + +   ++       
Sbjct: 378 SLSLLDEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK-KEEILNILKDKNIEVL 436

Query: 440 -SLVDGDV 446
            +L  GD+
Sbjct: 437 ITLGAGDI 444


>gi|307564692|ref|ZP_07627222.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
 gi|307346620|gb|EFN91927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
          Length = 443

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 115/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  ++              G+    + + +         
Sbjct: 95  FAGRYTTSKMICITGSNGKTTTTSLIFHIFKDAGYDVGLAGNIGKSLALQV----AESPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            + + EL    L  +    +  R +IA++  I P HL  +    E  A+AK  I +   K
Sbjct: 151 AYYVIELSSFQLDNM----YKFRANIAILLNITPDHLDRYEYKFENYANAKMRIIQNQTK 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQG 278
             +     DD   +    K     ++  Y F + K             E  + +E  +  
Sbjct: 207 EDSFIYWKDDPVIKKELEKFDVKAVQ--YPFSELKET----GSIGYIEEGMYTIEKPIPF 260

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      +I     +   K+LS F   E    R         
Sbjct: 261 NMEQEDLSLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFKGVE---HRLEKVCKVSG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  +   A+  +           + +LG     G    + +  + +++  
Sbjct: 318 VQYINDSKATNVDACWYALESMVT-------PTVLILG-----GRDKGNNYDAIKDLVKQ 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + V+L G     L D      I    + +M       +     GD V++
Sbjct: 366 KCRAIVYL-GADNKKLHDNFDNLGIITRDTHSMKDCVAACRELAKSGDTVLL 416


>gi|254515243|ref|ZP_05127304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
 gi|219677486|gb|EED33851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
          Length = 456

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 120/343 (34%), Gaps = 34/343 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A +I ITGS  K+T  EML   + +  +  A  G+          L  +    +F + EL
Sbjct: 117 APVIGITGSNAKSTVTEMLGAMVQAAGRRTAVGGNLGVP-----ALDLLDDQTEFYVLEL 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L         +   +A +  + P HL     +     AK  IF G      +  N 
Sbjct: 172 SSFQL----ERAGPLNLEVATVLNLTPDHLDRHGSMPLYHQAKHRIFNGCRA---VVFNV 224

Query: 228 DDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD     L     A G + + +  G+ +   F LR      EQ  +E        + V  
Sbjct: 225 DDP----LTIPPLAAGRRQVSWRMGEPELTGFGLRLV--DGEQMIVEGFEPLMRADEV-S 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L + + +    D  +   SV    +G   R    L +     I++S 
Sbjct: 278 LPGRHNLANALAALALGAAIDLPRDAML---SVLRSFKGLEHRCELVLEREGVRWINDSK 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AAI+ L       E R I + G     G    +    LA      +   V L
Sbjct: 335 ATNVGAALAAINGLGA-----EHRLILIAG-----GRDKGADFRSLA-PAVAAHCEVVLL 383

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  S     +ET++       +    GD+V++
Sbjct: 384 IGEAADGIATALGASCDTVIAETLEHAVELAAARARSGDIVLL 426


>gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
 gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
          Length = 455

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 96/275 (34%), Gaps = 16/275 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + + +          IA+ G+ GK+TT  +++  L+S    Y   G+            +
Sbjct: 92  SDIDLLFEKSRNLNFIAVIGTNGKSTTTALISHILNSNGLDYPVAGNIGVP------ALK 145

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + EL    L  ++  T      IAV+  I P HL     +     AK++IF 
Sbjct: 146 AKNSKDGYVIELSSFQLDLVKTFTA----KIAVLLNITPDHLDRHKDMNGYIKAKSKIFN 201

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++K     +N D+ +   +  K        +  F  +K  +  +         S+    
Sbjct: 202 RMDKNSYAVINIDNDYCRKIFMKLQQEQRIKLIPFSVTKILEKGISVVNNIINYSFFGNS 261

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD-TAIKALSVFHPKEGRGKRYRCAL 334
                +    +  G H  +N+  +  +  I+  +     I+A+S F        R +   
Sbjct: 262 --NFKLPFNKNLQGIHNCENIAASYAVAKIMGLEESTKIIEAISSFQSLP---HRMQYIG 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +    +  ++S   N  S   +I  L  I     G
Sbjct: 317 SINNISFYNDSKATNAISALQSIKALDNIYWLAGG 351


>gi|283850516|ref|ZP_06367804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
 gi|283574087|gb|EFC22059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
          Length = 442

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 132/405 (32%), Gaps = 64/405 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLR------- 105
           F   AV+ G  L V +       G+  +   P      +   L     A  +        
Sbjct: 52  FRAEAVEAGYDLRVGDHGPADFAGADLVVLSPGIRAASLTDCLAACPGAQVVSELELASW 111

Query: 106 -SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   I+A+TGS GKTTT  +++  L +  +     G+    +     LA  P DV   +
Sbjct: 112 FTAEPIVAVTGSNGKTTTVMLISHLLEAAGRKVFTGGNIGTPLS-EYVLAGDPADVV--V 168

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L     L    RP + V+   +P HL   + ++E   AK  +F+         
Sbjct: 169 LEVSSFQL----QLVRTFRPRVGVLLNFSPNHLDWHADLDEYLDAKLNLFKAQRPGDLAL 224

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +   +   E L  ++ + G   +  F  S                               
Sbjct: 225 VP--EELRETLAGRTLSKG--EVVWFAPSGR--------------------------FHC 254

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QNM              +TA  A   F P      R +    +     +D+
Sbjct: 255 PRLAGLHNRQNMEAAYLACQPFGVTEETAKAAFESFAPAP---HRLQIIGEKRGVLFVDD 311

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S     A+M+AA+          +     + G + + G+L+          L    ++ V
Sbjct: 312 SKATTVAAMEAALKSF-------DRPVRLLCGGVWKGGDLAALL------PLLKGKVASV 358

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G      + A    + + Y  T       + +  V GDV+++
Sbjct: 359 GLFGASREIFEAAWAGQVPLFYEPTQKAAVTRLFAEAVPGDVILL 403


>gi|260900699|ref|ZP_05909094.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308110245|gb|EFO47785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 452

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 142/394 (36%), Gaps = 30/394 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQALADVLER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F   ++ D+Q    K   + S  +V LQG+ +  V    +G H   N LM +    
Sbjct: 236 TEKQFS-GEDGDWQAH--KLVLDGSKFDVALQGEKVGTVEWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPELACQALGRFINTK---RRLELKGEEQGITVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LA+  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAD--SLHSADEVFLFQPDNIEWSVQDIADQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +  +D     I      GD ++V  SN 
Sbjct: 403 KQPAFVDADIDNFVAKIVERAQPGDQILVM-SNG 435


>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
 gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
          Length = 438

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP-----ALTLLKQENQLV 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++         
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRSSSLKALTTFT---GLPHRFQLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGEH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P    +  +ETM+   + +  +L  GD+V++
Sbjct: 365 I-KIYCFGRDGEQLAELRPEVSQL--TETMEQAMVLLAKNLAPGDMVLL 410


>gi|310657783|ref|YP_003935504.1| UDP-n-acetylmuramate--l-alanine ligase [Clostridium sticklandii DSM
           519]
 gi|308824561|emb|CBH20599.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           sticklandii]
          Length = 453

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 134/369 (36%), Gaps = 35/369 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  M T+  ++  +        +  + V   L+ +  +V  G  E+ ++
Sbjct: 105 IAISGTHGKTTTTSMTTVVFNANDE--------DPTVLVGGNLSVIDGNVRIGNSEVFIT 156

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P IA+I  +   HL  FSG+E+I ++ A+    ++  G +  N DD 
Sbjct: 157 EACEYVDSFLKFYPKIAIILNVEEDHLDYFSGLEQIEASFAKFASQVKPDGFVIANGDDE 216

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSM-EVVHHGI 288
                  K+     KT   FG++KN    +      S   +   + +  K +        
Sbjct: 217 NI----LKALKDVDKTKIYFGRNKNCQAIIHDEVYNSSGYATFSLSMDDKFIGRFTLKVP 272

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +    +    +D             G G+R+          + D+ Y  
Sbjct: 273 GKHNVLNATAAILSAYVSKLPLDAIKTG---IESYTGVGRRFEYKGEVNGIKVYDD-YAH 328

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  + A +S    I  H       +          ++      A   +  +   IS ++
Sbjct: 329 HPTEVAATLSAAKMIKHHL---LYTIF--QPHTYTRTKELLDRFAVSFNDSDVVIISDIY 383

Query: 406 LSGF------HVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            S        H   L +A+ +S     Y  ++D +  ++ S L   D+V    +     Y
Sbjct: 384 ASRENDPGNIHSKDLVEAIKKSGKDALYIGSLDEVQNYLGSVLEPEDIVFTIGAGDV--Y 441

Query: 459 RLINLLLEE 467
            L   LL +
Sbjct: 442 TLGESLLHK 450


>gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
 gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
          Length = 492

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 108/332 (32%), Gaps = 62/332 (18%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             + +IPV    D+L                  IAITG+ GK+TT  +++  L+S    Y
Sbjct: 83  AKNFNIPVISDIDLL---------FEKSKNLNFIAITGTNGKSTTTALISHILNSSGLDY 133

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+            +     D  + EL    L     L  +    IAV+  I P HL
Sbjct: 134 QVAGNIGVP------ALQAKASKDGYVLELSSFQLD----LVKIFTAKIAVLLNITPDHL 183

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--- 254
                +    +AK++IF+ ++K     +N D+ +   +           +  F  +K   
Sbjct: 184 DRHQHMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFITLQQEQRIKLVPFSVTKILE 243

Query: 255 ------------------------------NADFQ---LRKWKQCSE----QSWMEVQLQ 277
                                           +FQ     + K C      Q+ +     
Sbjct: 244 NCISVVDNKINDNFFDDIRFECQYNSESFRQNEFQGEPAERIKVCEHRLDLQNSLVSNFL 303

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             ++   ++  G H  +N+  +  +  I+  +    ++++S F        R +   +  
Sbjct: 304 NDAVPFNNNLQGTHNDENIAASYAVAKIIGVEPKKILESISGFQSLP---HRMQYICSIN 360

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++S   N  S   +I  L  I     G
Sbjct: 361 NINFYNDSKATNAISAVQSIKALDNIYWLAGG 392


>gi|332829612|gb|EGK02258.1| UDP-N-acetylmuramate-L-alanine ligase [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 457

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 139/369 (37%), Gaps = 42/369 (11%)

Query: 114 TGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTTT  ML   L        A +G    + G  L L+      +F + E      
Sbjct: 116 AGTHGKTTTSSMLAHILKQSHLDCNAFLGGILKNYGSNLMLS---DKSEFTVVEA----- 167

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E     H + P++A+IT++ P HL  +   EE   +  +    ++  G + + ++    
Sbjct: 168 DEYDRSFHWLHPYMALITSVDPDHLDIYGTEEEYLKSFEKFTSLIQPGGALVMKHN---- 223

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YH 291
             +K          IY++   K  DF  +  K  + +   +     ++++ +  G+    
Sbjct: 224 --IKLSPKTGKDVRIYTYSMDKG-DFHAQNIKIGNGEISFDFVTPKETIDNIQLGVPVKI 280

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N + ++ +  +     +     ++ F    G  +R+   L      +ID+ Y  +P 
Sbjct: 281 NIENGIGSMALAWLNGVTAEELRHGMATFM---GAKRRFDFLLKTDKIVMIDD-YAHHPE 336

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNIS 402
            + A+I+ + ++ P+ +   I        +   ++ F  + A          +L +Y   
Sbjct: 337 ELAASITSVKELYPNRKLTGIF----QPHLYTRTRDFAPEFARSLSLLDELILLDIYPAR 392

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG--FYR 459
              + G     + D +     +      + L   +++   D  +V++   +         
Sbjct: 393 EKPIEGVTSKIIFDKVTCPKTLC---NKEELLPLLEN--KDNIEVLLTMGAGDIDQLLKP 447

Query: 460 LINLLLEEF 468
           + ++L +E+
Sbjct: 448 IKDILEKEY 456


>gi|227115174|ref|ZP_03828830.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 461

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 38/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +  +G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIILPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           +D   + +         + +      +   ++ +K     + S  +V L  + +  VH  
Sbjct: 222 NDLNLKQVMGMGCWSEQELV-----GEEGTWRAQKVSI--DASQYQVYLNNELVGEVHWK 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R      +   T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINAR---RRLELRGTEHGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +S L      G  R +AVL      M  +G         L          
Sbjct: 331 AHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMK-LGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLFQPTHIPWQVVEVAEACVQ--PAHWSADIDTLVENIVKTAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLE 466
             + N LL+
Sbjct: 439 GNIHNKLLD 447


>gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays]
 gi|194704536|gb|ACF86352.1| unknown [Zea mays]
          Length = 540

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 145/400 (36%), Gaps = 36/400 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   + +     V   G+  D+  +A  + F  + G   DG   +  A +
Sbjct: 8   MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADK 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +GA  VV + D+          +  VDD+L AL  L     +R      II +TG+ G T
Sbjct: 65  RGAVAVVADQDLNIEGTLACRALVIVDDILTALRVLPACLYSRPSMNMAIIGVTGTDGVT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL------------------ARMPVDVDF 162
           TT  ++     ++      +G    +      L                    +    + 
Sbjct: 125 TTTHLVKAMYEAMGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNGTEA 184

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKT 220
            + E G   +      + +    IAV+T +      N    EE  S  A +F  +   + 
Sbjct: 185 VVLEKGTDGMPPSGVDSEI-DYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDPER 243

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD       A+         YSF ++K AD    K++    ++ + VQ     
Sbjct: 244 HRKVVNIDDPSAPFFAAQGGHDVPVVTYSF-ENKKADVHTLKYQLSLFETEVLVQTPHGI 302

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+    +G     ++L T+ +   + A ++  ++ +       G   R      +  F 
Sbjct: 303 LEISSGLLGRDNIYSILATVAVGIAVGAPLEDIVRGIEEVDAIPG---RCELIDEEQAFG 359

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           +I + +   P ++   +  + ++ P    R + V+G   E
Sbjct: 360 VIVD-HARTPEALSRLLDGVRELGP---RRIVTVVGCCGE 395


>gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 428

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 146/399 (36%), Gaps = 43/399 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             AV K   LVVV+  +  S   L   V      +  + ++ +A R      I+AITG+ 
Sbjct: 34  DEAVDK-VQLVVVSPGVPLSKRPL---VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTN 89

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L    +     G+        +  +         + E+    L  I++
Sbjct: 90  GKTTTTTLVGEILKKQYEDVVVCGNIGLPFIDTIETSSKN---TIFVLEISSFQLETIKY 146

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                +P +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L  
Sbjct: 147 F----KPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDLIG 202

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMA 293
            +       +  F K+K+   Q        E+  +    +GK+ EV+        G H  
Sbjct: 203 LAKG----NVIVFSKNKS---QFENM-VFVEKDTIYFTFEGKTQEVMKKDEIFIPGEHNL 254

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  +        + DT  + L  F   E    R             ++S   N  + 
Sbjct: 255 ENALAAISCTLPFGIEKDTIEQVLKTFRGVE---HRIEFVAEINGIKFYNDSKGTNTDAA 311

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + A+              I + G      +  +SF    A +++   +  V+L G     
Sbjct: 312 EKALRAFES-------PIILIAGG----YDKGESF-EKFASLVAK-KVKKVFLLGQTKHK 358

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVV 449
           +   L + I     E +  L   ++ S     +GD+V++
Sbjct: 359 IASELEK-IGYKNFELVSTLKEAVRKSFECAQNGDIVLL 396


>gi|292489592|ref|YP_003532482.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|292898188|ref|YP_003537557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Erwinia amylovora ATCC 49946]
 gi|291198036|emb|CBJ45139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase (murein peptide ligase [Erwinia amylovora ATCC
           49946]
 gi|291555029|emb|CBA23087.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|312173768|emb|CBX82022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 450

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 141/413 (34%), Gaps = 40/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDRWVIAVAGTHGKTTTAGMTAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E               V   P 
Sbjct: 124 ILQACGYEPGFVIGGVPGNFEVSANLGKSP----FFVIEADEYDCAFFDKRAKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   +  +  I      +   +   G I L   D+  + + +       +
Sbjct: 180 TLILNNLEFDHADIYDDLRAIQKQFHHLVRIVPGQGKIILPEQDANLKQVMSMGCWSEHE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           T+      +N  +Q+   K   + S  EV L G+ +  V    +G H  +N +M +    
Sbjct: 240 TV-----GENGCWQVN--KLSPDASCWEVLLDGERVAQVNWSLVGEHNMRNGMMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVKPEDAGRALNDFINAR---RRLELRGESNGIKVYDD-FAHHPTAIHATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
             G  R +AVL      M  MG         L           V+L   H     V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGISKDDLAPALGR------ADEVFLYQPHHIPWQVSQVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           DA  +    H+S  +D L   I  +   GD ++V  SN  GF  +   LL+  
Sbjct: 401 DACIQ--PAHWSADIDTLVEAIAKTAHPGDTILVM-SNG-GFGGIHQKLLDRL 449


>gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
 gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
          Length = 464

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 117/373 (31%), Gaps = 37/373 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV     +          A   +   ++A+TGS GK+TT  ++   L  + +     G+
Sbjct: 95  VPVDNDIGLFFRSFATNAWANFDTAPRVVAVTGSNGKSTTSALIHHILEHVGRPATLAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +         P D +  + EL        R LT    P +AV T ++  HL    G
Sbjct: 155 IGRGVLDIDP----PHDGEVVVLELSSYQTDLARSLT----PDVAVFTNLSEDHLDRHGG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
           +    +AK  +F          +  D+     L  + +       +     ++       
Sbjct: 207 MGGYFAAKRRLFAEGGPD-RAIVGVDEDEGLFLAGQLAEGRADDRVIRISFAQK--LTGP 263

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W+  + + ++    +GK      +  V    G H  QN      +   L          
Sbjct: 264 GWQVFARKGFLSEYRKGKQIASVDLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVI--- 320

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +  H  +G   R +    +     +++S   N  +   A++    I     G       
Sbjct: 321 EAALHSFQGLPHRSQLVGQKDGVRFVNDSKATNADAAAKALAAFPSIRWICGG------- 373

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
                  L +   +D     S  ++   ++ G    A    LP  +      TM      
Sbjct: 374 -------LEKDGGMDALRNAS-ASVVKAYVIGREAAAFAMKLP--VEAEICTTMAQAVEK 423

Query: 437 IQSSLVDGDVVVV 449
                  GDVV++
Sbjct: 424 AAREAEAGDVVLL 436


>gi|291514888|emb|CBK64098.1| UDP-N-acetylmuramate--L-alanine ligase [Alistipes shahii WAL 8301]
          Length = 460

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 124/367 (33%), Gaps = 41/367 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLAR 155
           +  +   L     ++A+ G+ GKTTT  M+     ++     A +G  + + G  L L  
Sbjct: 98  RSQMLGHLAEGKYVMAVAGTHGKTTTSTMVAWLNRALTGGGSAFLGGISKNFGGNLVLG- 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D      E        +R     + P +AV+T+    HL  +   E +  A ++   
Sbjct: 157 ---DGGRLAVEADEFDRSFLR-----LYPDVAVVTSADADHLDIYGTHEAVKEAFSQFVR 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEV 274
            +   G++ +       +             +Y +   +  DF  R  +      +  ++
Sbjct: 209 QIRPGGSLII-------KRGVDIVIDNPGIAVYRYSYDEPCDFYARNVQLLEGGHYRYDL 261

Query: 275 QLQGKSME-VVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFHPKEGRGKRY 330
                + E       G+   +N +  +      +        A K         G  +R+
Sbjct: 262 VTPSGAFEGCTLGVPGWVNIENAVAAVASVWCAAKAGGTPLDADKLRGALASFSGVKRRF 321

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +N      +D+ Y  +P  + A ++ + ++ P   GRRI  L     +   ++  H 
Sbjct: 322 EFYVNTPKQVYMDD-YAHHPRELAATLTSVRKMFP---GRRITALFQ-PHLYTRTRDLHA 376

Query: 391 DLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           + AE LS         +Y      + G     +   +     +      D L   + +  
Sbjct: 377 EFAEALSHADEVVLLPIYPAREEPIPGITSEIIARRVAAPCRIV---DRDHLADEVAAM- 432

Query: 442 VDGDVVV 448
            D DVV+
Sbjct: 433 -DTDVVI 438


>gi|123441030|ref|YP_001005019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087991|emb|CAL10779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 444

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 130/350 (37%), Gaps = 38/350 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +        G+        L    +    +  
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALNLLKQLTLQKHENQL 160

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
            + EL    L      T  +    A I  +   H   +  G+++  +AK  ++E  +   
Sbjct: 161 VVLELSSFQL----ETTSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAK--- 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    ++            SFG        +  +    +Q  + ++++G+ +
Sbjct: 214 VCVVNADDALTMPVRG-----ADNRCISFGVD------VGDYHLNKQQGEIWLRVRGEKV 262

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++KAL+ F    G   R++        
Sbjct: 263 LNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFT---GLPHRFQLVFEHNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGL-----PLDGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +I  ++  G     L +  P    +  +ETM+   + +  SL  GD+V++
Sbjct: 370 HI-KIYCFGRDGEQLAELRPEVSQL--TETMEQAMVLLAKSLAPGDMVLL 416


>gi|260591745|ref|ZP_05857203.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
 gi|260536029|gb|EEX18646.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
          Length = 459

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 129/368 (35%), Gaps = 37/368 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      +   G+ GKTTT  M    +        A +G  + + G    L+ 
Sbjct: 101 RAQVLGTLTRTHKGLCFAGTHGKTTTSTMCAHIMHKSHLDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E       E     H +RP ++VIT+  P HL  +   E    +     E
Sbjct: 160 --DHSDYVVIEA-----DEFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTE 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + +       + L+ K H      +Y + + +  DF     +        +  
Sbjct: 213 LIQPGGALII------HKNLEMKQHVQEGVKVYDYSREEG-DFHAENIRIEKGTITFDFV 265

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              ++++ V  G       +N +  + +  +     +   + +  +   +   +R+   +
Sbjct: 266 SPIETVKDVELGQPIPINIENGIAAMAMAQLNGCTAEELREGMRTYGGVD---RRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P  +   +     +      R+I V+     +   ++ F+ D A+
Sbjct: 323 KNDRHVFLSD-YGHHPKEI---LQSAKSLKELYADRKITVIFQ-PHLYTRTRDFYKDFAD 377

Query: 395 VLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS         +Y      + G     + D L  +I     +  D +  F++S   D D
Sbjct: 378 ALSHFDEVILTEIYPAREQPIEGVTSKLIYDNLRPNIAKQMIK-KDDVLDFVRS--RDFD 434

Query: 446 VVVVKSSN 453
           V+VV  + 
Sbjct: 435 VLVVLGAG 442


>gi|212702355|ref|ZP_03310483.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
 gi|212674233|gb|EEB34716.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
          Length = 436

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 123/388 (31%), Gaps = 56/388 (14%)

Query: 63  KGAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            GA LVV +    V  +  +  P    +     L ++ +A R      ++A+TG+ GKTT
Sbjct: 76  AGAKLVVPSPGLPVVRLREMMGPHADAEGT-EILAEMELAWRALDGEPVLAVTGTSGKTT 134

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  +    L          G+    +   L         D  + E     L         
Sbjct: 135 TVSLAAAMLREQGLRVFLGGNIGTPLSEYLLSGE---KADVLVLETSSFQL----QCCST 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P +AV+  I+P HL     +EE   AK  +F    +     L       E   A+   
Sbjct: 188 FHPRVAVVLNISPNHLDYHKDMEEYIEAKFRLFRCQTEEDLAVL---APELEETAAR--- 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                   FG       + RK     E  + +               G H   N      
Sbjct: 242 --------FG------LRARKVWIRPEGRFPDC-----------PLFGQHNQFNAEAAWQ 276

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   ++ A +A++ F P      R            +++S     A+++ A+  + 
Sbjct: 277 ACRPFGVTLENAARAVAAFKPLP---NRLESVARVHGVLYVNDSKCTTVAALEVALEAMD 333

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                       + G   + G+L      DL           V L G      + A    
Sbjct: 334 H-------PVHLLCGGKFKGGDL--DGMKDLLR----RKAKSVNLYGASREIFEAAWQGV 380

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + + + E M+   L +Q  + +GDVV++
Sbjct: 381 VPLCWHERMEDAVLALQDKVGEGDVVLL 408


>gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 448

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKFLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q             G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFDNLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      ++S   N  +  AAI  L       +G+ + + G   +  + S      +A+
Sbjct: 315 ERNGVDYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAQ 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 YCRAA-----VLLGRDAELIAQALGDAVPLIRVDTVQAAAERSAELAQHGDAVLL 420


>gi|20094189|ref|NP_614036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
 gi|19887208|gb|AAM01966.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
          Length = 480

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 150/493 (30%), Gaps = 72/493 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAV 61
           T  +L + ++G      P   + G           +         KG           A 
Sbjct: 4   TVRELAENVEGEIRSGDPDSMIAGWFSTLGRAKEGDVVIRWWLDDKG--------AEIAS 55

Query: 62  QKGAGLVVVNTDM---VASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSV 117
           ++G   +V        +     L IP+   + D            +    AT I +TG+ 
Sbjct: 56  ERGVACLVTEHPRGKLIERCDELGIPLILTEVDRANEYALRVAREKCAPDATAICVTGTN 115

Query: 118 GKTTTKEMLTIALSSIKKTYAC----IGSYNNHI-GVPLTLARMPVDVDFGIFELGMSH- 171
           GK+TT  +L   L +      C        N  I  V     R     D+   E+     
Sbjct: 116 GKSTTNHLLHHILDTAGFDAYCNTDFRSEKNTLIDPVVAMELREERPEDYLCVEVSEVQG 175

Query: 172 -------LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                        +   ++  +AV+T +   H +  S +EE+  A   +   L K G   
Sbjct: 176 LPTGRIMEDHAYRMAKALKCELAVVTNVGVDHTNLVSSLEEMVDAVYGVVRALRKGGIAV 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD +   +  +    G++T++ +G  +         ++   + W+ +  +       
Sbjct: 236 LNRDDRYVRRMTRE----GVETVW-YGWDEG----YSHIEERDGEEWIVLDEEPLIPVRE 286

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                 H   N L  +     L  D +   + L  + P + R +R           LI +
Sbjct: 287 FPLPVDHFLYNALAAVAAAGALGIDREDIAEGLRTYQPLKRRFERL------CDDPLIYD 340

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-- 402
            +  NP  + A +  L ++       ++ V+  +   G      +  +A  L+       
Sbjct: 341 DFCHNPDGVLATVRALRRL----GRSKVIVVFAI--RGSRGVDINRQIARALAEGAKDLQ 394

Query: 403 ----HVWLSGFHVLALKDAL----------------PRSIHVHYSETMDGLFLFIQSSLV 442
               HV +       L D                     I   + + ++           
Sbjct: 395 DEGIHVHVIATSSEGLVDDANVVRPEERRAFLEELERSGIDYEHYDRLEDALERALDLAD 454

Query: 443 DGDVVVVKSSNSC 455
           D  V+++  +   
Sbjct: 455 DDTVILLGGAQGM 467


>gi|226943451|ref|YP_002798524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azotobacter
           vinelandii DJ]
 gi|226718378|gb|ACO77549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azotobacter
           vinelandii DJ]
          Length = 448

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         ++A I+AITGS  K+T   ++     +  +  A  G+          L 
Sbjct: 96  LSGDIELFARYARAPIVAITGSNAKSTVTTLVGEMARAAGRRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +   ++  + EL    L      T  +   +A    ++  H+  ++ ++    AK  IF
Sbjct: 151 LLDDGIELYVLELSSFQL----ETTERLNAEVATCLNVSEDHMDRYADLQAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N DD+    L A          ++FG  K  DF+     + + +  +  
Sbjct: 207 RGARQ---VVVNRDDALSRPLVAD-----RLPCWTFGLGK-PDFKGFGLLEENGEKCLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  + +   +       ++ L  F     R +  R   
Sbjct: 258 QFETLMPVRELKIRGAHNQANALAAMALGHAVGLPFAPMLETLKRFAGLPHRCQWLRDVR 317

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G++   D+S   N   + AA++ +  +     G+ + + G   +  + S S    +AE
Sbjct: 318 EVGYY---DDSKATN---VGAALAAIEGLGADIAGKLVLIAGGDGKGADFS-SLRRPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     +   L  ++ +    T++       S    GD V++
Sbjct: 371 HCRA-----VVLLGRDAGRIAVVLDGAVPLVRVGTLEEAVERSASLAEAGDAVLL 420


>gi|298368899|ref|ZP_06980217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282902|gb|EFI24389.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 458

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 124/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSKSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEVNADGSFDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAALPE------ 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKGADQVFCYAGGVDWDVAEALAPLGGKLHVGQDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 445 -GFGGIHGKLLEALQ 458


>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida F1]
 gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           F1]
          Length = 450

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 130/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA IIAI+GS  K+T   ++    +   K  A  G+          L 
Sbjct: 98  LSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP-----ALD 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D++  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 153 LLADDIELYVLELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +      +  ++FG + + DF+    ++   + ++  
Sbjct: 209 RGARQ---VVVNRQDALSRPLPVE-----GRPCWTFGLN-SPDFKAFGLREVDGEKYLAF 259

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +        +  + AL  F     R +  R   
Sbjct: 260 EFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLAALREFGGLAHRCQWVR--- 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      D+S   N   + AA++ +  +    EG+ + + G   +  E + +    +  
Sbjct: 317 ERNGVNWYDDSKATN---VGAALAAIEGLGADIEGKLVLIAGGDGKGAEFT-ALREPVKR 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L +AL  ++ +   +T+D            GD V++
Sbjct: 373 FCRA-----VVLLGRDAERLAEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLL 422


>gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
 gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
          Length = 438

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDTDRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +   T
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG        +  +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCISFGVD------VGDYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + +      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QLDGTLYLLLGGDGKSADFTP-----LKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P       +ETM+     I   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAELAELRPE--VAVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|325962950|ref|YP_004240856.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469037|gb|ADX72722.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 458

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 140/430 (32%), Gaps = 45/430 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIP-----------VFGVDDVLGALNKLAVAARLRS 106
                 GA + V             +            V   +  L  L++    A    
Sbjct: 51  AELAAAGARIAVGYAAANLGDAQTVVAGSAIRPDNPELVAAREAGLPVLHRSQALAATMG 110

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T++ + G+ GK+TT  M+TI L       +        IG  +    +          
Sbjct: 111 GDTVVTVAGTHGKSTTTSMVTILLQGAGLDPS------FAIGANVPALGVNAAHGTSGIF 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  +   +  FL +  RP IAV+T + P HL ++   E +  +       L   G +   
Sbjct: 165 VAEADESDGSFLNY--RPRIAVVTNVEPDHLDHYGTAEAVYESFDRFTGLLPADGLLVAC 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD+    L  ++   G   +  +G S  AD  L             V        +   
Sbjct: 223 ADDAGALALAERTRKRGNTRVLLYGTSAEADLVLHDGGPGDTA----VSTPSGRYPLALQ 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N      +   L  D   A  AL+ F    G  +R+          + D+ Y
Sbjct: 279 VPGRHNALNAAAAFAVALELGVDPGAAAAALAHFS---GASRRFELKGEARGVRVFDD-Y 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLS 397
             +P  ++AA+   +       G ++ VL     +   ++ F  + A+         VL 
Sbjct: 335 AHHPTEVRAAL---AAARSVAGGHKVHVLFQ-PHLFSRTREFAQEFADALNLADTALVLD 390

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +Y      + G     + D L     +  +         + ++  +GD+V+   +     
Sbjct: 391 IYPAREDPIPGVTSQLIADHLGGGGRLVAAADA---VAALAAAAAEGDIVLTAGAGDVTA 447

Query: 458 Y--RLINLLL 465
           Y  +++  L 
Sbjct: 448 YGPQIVEALR 457


>gi|317121201|ref|YP_004101204.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591181|gb|ADU50477.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 564

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 124/403 (30%), Gaps = 67/403 (16%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--------KKTYACIGSYNNHIGVPLTL 153
              R +A +I +TGS GKTTT  ++   L            +     G+    +   +  
Sbjct: 188 FLERCRAKVIGVTGSAGKTTTTSLIGEGLRRATAPGGPLEGRPVYVGGNIGRPLIEEVD- 246

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R+P +    + EL    L     L H   P +AV   + P HL     +E  A+AK+ I
Sbjct: 247 -RIPPEALV-VLELSSFQL----ELCHRA-PQVAVYLNLRPNHLDVHGSMEAYAAAKSRI 299

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                  G   LN DD     L  ++       +  F  S     QL + +       + 
Sbjct: 300 VALQAAEGWAVLNGDDPAPAGLAPRAPG----RVAIFAASARVARQLAEQEAGRRGGPVR 355

Query: 274 VQL---------QGKSMEVVHHG-----IGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                        G+    V  G      G H   N L  +    +  A  +   +A + 
Sbjct: 356 AAYLAGEHLAVWDGQEERCVLDGRAMVLRGAHNRLNALAAILAGWVAGAPPEAMAEAAAA 415

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F   E    R             ++S    P    AA+   ++         + + G   
Sbjct: 416 FRGVE---HRLELVREVDGVRYYNDSIATAPDRTLAALEAFTE-------PVVLIAGGYD 465

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL---SGFHVLALKDALPRSIH---VHYSETMDGL 433
           +           L   +     + V L   +G     +++A  R      V    +++  
Sbjct: 466 KGIPFDP-----LGPAVCRRARAVVLLGKTAGAIQRVIEEAAAREGRRPVVRRVGSLEEA 520

Query: 434 FLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
               +     GDVV++    +S             F  L+  L
Sbjct: 521 VAEARRLARPGDVVLLSPACASYDMFRDYVERGQRFKELVRAL 563


>gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
 gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 141/377 (37%), Gaps = 38/377 (10%)

Query: 80  SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            L +P       + +  + ++ +A  L +  T I ITG+ GKTTT  ++     + K   
Sbjct: 79  PLDLPFIQKLYSNNIKVIGEVELAYELSNNPTFIGITGTNGKTTTTSLVGEIFKAAKCDT 138

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             +G+    +   + +A    +  F I EL    L  I       +P +++I  ++P HL
Sbjct: 139 YVVGNIGKPVIETVGIA---DEKSFLITELSSFQLESI----VDFKPRVSMILNLSPDHL 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           +    +E    AKA IF+  +K     LNYDD     L +K ++     +  F +     
Sbjct: 192 NRHHTMENYIMAKANIFKNQDKNDFTILNYDDEAVRALSSKCNS----QVLYFSRKHQG- 246

Query: 258 FQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             +R     +E + + + +  +     E      G H  +N +       +   D++   
Sbjct: 247 --VRGIYLNNEGN-IVINIDKEIVLLHEDELSLPGGHNLENCMAATLAAYVSGIDIEVIR 303

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + L  F   E R +  +          +++S   NP S   A++         +   I +
Sbjct: 304 EVLKTFKAVEHRLEYVKTV---NGVMYVNDSKGTNPDSTIKAVTS-------YKKPIILI 353

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDG 432
            G     G    S + +L + ++  N+  + L G     ++          +   + M  
Sbjct: 354 AG-----GYDKDSTYDELLD-IAKQNVKALVLLGETASKIEACAKTKGFEIIKRVQNMKE 407

Query: 433 LFLFIQSSLVDGDVVVV 449
                     +GDVV++
Sbjct: 408 AVETSAELANEGDVVLL 424


>gi|227497591|ref|ZP_03927814.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
 gi|226832960|gb|EEH65343.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
          Length = 495

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/470 (14%), Positives = 154/470 (32%), Gaps = 64/470 (13%)

Query: 44  FAIKGPHY---DGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--- 95
            A +G H    D H    +   + +G  + V +        +  +    + +    L   
Sbjct: 34  LAEQGAHVTGSDAHSSPALEQLLAQGLEVRVGHDADAVPPEATVVVSTAIKETNPELVRA 93

Query: 96  --------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                   ++    A      +++A+ G+ GKTTT  ML  AL+ +         ++   
Sbjct: 94  RGRGQEVIHRSQALALAARGRSMVAVAGAHGKTTTSGMLAEALTELG--------WDPSF 145

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            +   +  +      G  ++ ++   E         P + ++T + P HL  +   E   
Sbjct: 146 AIGGVVRALGSGAHLGAGQVLVAEADESDRSFLNYAPAVEIVTNVEPDHLDTYGTREAFE 205

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---------- 257
            A  +    L   G +     D     L   +   G + + ++G    A+          
Sbjct: 206 EAFLDFSRRLIAGGLLIACAQDPGALRLARAAAGEG-RRVVTYGSLSPAELPDQDLVGLA 264

Query: 258 -FQLRKWKQCSEQSWMEVQL------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +L   +  ++ +   + L        + + +     G H+A +          L A  
Sbjct: 265 HVELEVEEHPAQGTRSRLTLWTTPTSHDEPVSLELSVPGEHVALDAAAAWACGVELGAQP 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +AL  F   +   +R+      G   ++D+ Y  +P  ++A  +   +++    GR
Sbjct: 325 QAMARALGAFGGTK---RRFEDRGEVGGVRVVDD-YAHHPTEIQALATAAREVAQARGGR 380

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALP 419
            + +      +   +Q+F     + LSL ++  V              G     + + +P
Sbjct: 381 LLILF--QPHLFSRTQAFAERFGQALSLADLVVVTAVYPAREAQEDFPGVSGRTVSEHVP 438

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYRLI-NLLLEE 467
                 Y          +  +   GD+++   +       ++I + L E 
Sbjct: 439 GG---RYLADRVEAARSLADAAQRGDLLLTVGAGDVTEMGQVILDRLAER 485


>gi|169343170|ref|ZP_02864191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens C str. JGS1495]
 gi|169298722|gb|EDS80798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens C str. JGS1495]
          Length = 458

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 120/350 (34%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +          +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----AEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++   + L  ++    ++  +S  K++  D   +  K         + + GK +     
Sbjct: 228 DENEITKNLDKEAKGKVVR--FSSKKTEGEDAYYKDGK---------LYVHGKEVCKKDD 276

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            I  G H  +N L    +       +++  K    F    G   R             ++
Sbjct: 277 IIIKGMHNVENYLAAF-LAVYDEVSIESMKKVAETFG---GVHHRCEFIREVDGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  + P    A +    +         I + G   +        +           I  +
Sbjct: 333 SIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIKAI 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     +K A  R        + V+  E+++ +    +S   +GD++
Sbjct: 380 VLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDII 429


>gi|50122848|ref|YP_052015.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613374|emb|CAG76825.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 463

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 38/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +  +G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIILPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           +D   + + A       + +      +   ++ +K     + S  +V L  + +  VH  
Sbjct: 222 NDITLKQVMAMGCWSEQELV-----GEEGVWRAQKVAI--DASQYQVYLNNELVGEVHWK 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R      +   T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINAR---RRLELRGTEHGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +S L      G  R +AVL      M  +G         L          
Sbjct: 331 AHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMK-LGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLFQPTHIPWQVVEVAEACVQ--PAHWSADIDTLVENIVKTAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLE 466
             + N LLE
Sbjct: 439 SNIHNKLLE 447


>gi|260596513|ref|YP_003209084.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           turicensis z3032]
 gi|260215690|emb|CBA28025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cronobacter
           turicensis z3032]
          Length = 438

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +    +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLEEGRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTFSLKAAAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAT---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGID------VGDYHLNRQQGEIWLRVRGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V     +G H   N L  L +         +++KAL+ F    G   R++ A       
Sbjct: 258 NVKEMKLVGQHNYTNALAALALADAAGLPRASSLKALTTFG---GLAHRFQLAYEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H    + +    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLAHYLTGDRV---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  G    AL    P        ETM+     I   +  GD+V++
Sbjct: 366 --RLYCFGRDGDALAALRPEVAERM--ETMEEAMKVIAGRVTPGDMVLL 410


>gi|251788248|ref|YP_003002969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya zeae
           Ech1591]
 gi|247536869|gb|ACT05490.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya zeae
           Ech1591]
          Length = 437

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 132/347 (38%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWAVGVGGNIGVP-----ALELLKQESQLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ +    A I  +   H + +  G+++  +AK  I+E  +    
Sbjct: 155 VLELSSFQL----ETTYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAK---V 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V+ +     
Sbjct: 208 CIVNADDALTMPVRG-----ADDRCLSFGVDVG-DYHLNRQQ---GETWLRVKGERVLNT 258

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ AL +     +
Sbjct: 259 REIKLVGQHNYTNALAALALADAVGIPRSSALIALTTFT---GLPHRFQLALERNGVRWV 315

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L     H +G    +LG   +  + S      L   L    I 
Sbjct: 316 NDSKATNVGSTEAALSGL-----HVDGMLHLLLGGDGKSADFSP-----LLRYLQGDRI- 364

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       ++TM+     I   +  GD+V++
Sbjct: 365 RLYCFGRDGGQLAALRPD--IAERTDTMEQAMTLIAGRIQPGDMVLL 409


>gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
 gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC
           33323]
 gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
          Length = 523

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 141/470 (30%), Gaps = 63/470 (13%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++  A   GA   V         G        V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPEGKGMH---ALVV 90

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN 145
            DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I     A   S ++
Sbjct: 91  RDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDD 150

Query: 146 ------------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                        +  P +L      R  VD       + +S     +     +   +  
Sbjct: 151 IVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGF 210

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIK 245
              I P H+         +    K ++     K     +N   D F E+  A +      
Sbjct: 211 FLNITPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAMSDHFDEIYAAATTTTNPD 267

Query: 246 TIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGY 290
           +IY F ++        +  DF+ +  +   +++  ++    +         +     IG 
Sbjct: 268 SIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIGD 327

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    +    +     ++  +           G+            ++D  Y  N 
Sbjct: 328 FNEMNGTAAIIGAGLAG---ESYAECAKGIRHVTIPGRMETLPSKNHGTVIVD--YAHNK 382

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGF 409
           ASM A +S +         + I V+G   + G      F   L    +   ++       
Sbjct: 383 ASMIALMSFMQ--REFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYANKAFLTTDDPGFE 440

Query: 410 HVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
             + +   +   I     +       +       +     D+V++  K +
Sbjct: 441 DPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLICGKGA 490


>gi|197105787|ref|YP_002131164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
 gi|226722943|sp|B4RFS2|MURD_PHEZH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|196479207|gb|ACG78735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
          Length = 469

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 124/414 (29%), Gaps = 41/414 (9%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
              D  +F    +  G  L              +      D  +    +   AA    + 
Sbjct: 59  TRADWREFAAVMLSPGVPLTHPAPHWTVERAREAGAEIVGD--IELFARTVNAAPEHKRP 116

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+AITG+ GK+TT  ++    +   +     G+    +                + EL 
Sbjct: 117 KIVAITGTNGKSTTTALIGHICAEAGRDVRIGGNIGYGVLG----LEDMHGGAVYVLELS 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     LT  +   + VI  I+P HL     ++E  +AK  I     K  T  +  D
Sbjct: 173 SYQLD----LTSSLHADVTVILNISPDHLERHGTMDEYVAAKRRILLNQGKGDTAVIGVD 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + +  +  A   +TI     SK     +         +  E   +   ++      
Sbjct: 229 DPWGQRICTEITAANRRTIVPVSASKAMSRGVYALDGLLYDATGERAQEVADLKRARSLP 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN          L    + A + L  F    G   R       G    +++S   
Sbjct: 289 GRHNWQNAAAAYAAARGLGISGEEAAQHLMTF---PGLAHRMETVAVLGKVRFVNDSKAT 345

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLS 407
           N     AA   +S            + G + + G         +  ++ L+  I   +L 
Sbjct: 346 NAD---AARQAMSSYPKFYW-----IAGGLPKTG--------GIDGLIDLFPRIEKAYLV 389

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           G    A  D L        S T++       +            + + G   ++
Sbjct: 390 GEAAPAFADVLRGKAPAVESGTIEAAVRQAYAD-----------ARAAGQEAIV 432


>gi|188535054|ref|YP_001908851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
 gi|188030096|emb|CAO97982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
          Length = 450

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 40/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M+  
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDHWVIAVAGTHGKTTTAGMVAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E               V   P 
Sbjct: 124 ILQACGYEPGFVIGGVPGNFDVSAKLGKSP----FFVIEADEYDCAFFDKRAKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   +  +  I      +   +   G I L   D+  + + A       +
Sbjct: 180 TLILNNLEFDHADIYEDLRAIQKQFHHLVRIVPGQGKIILPEHDANLKQVMAMGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +N  +Q++  K   + S  EV L G+ + EV    +G H  +N +M +    
Sbjct: 240 AV-----GENGCWQVK--KLSPDASHWEVWLDGERVAEVNWSLVGEHNMRNGMMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVKPEDAGRALNDFINAR---RRLELRGESNGIKVYDD-FAHHPTAINATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
             G  R +AVL      M  MG         L           V+L   H     V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGISKNDLAPSLGR------ADEVFLYQPHHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           DA  +    H+S  +D L   I      GD ++V  SN  GF  +   LL+  
Sbjct: 401 DACIQ--PAHWSADIDTLVEAIAKIAHPGDTILVM-SNG-GFGGIHQKLLDRL 449


>gi|288575707|ref|ZP_05977461.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa ATCC 25996]
 gi|288567146|gb|EFC88706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa ATCC 25996]
          Length = 472

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 123/375 (32%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 121 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSKSPFF 180

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 181 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 241 LIVCNG---QQQSLQDTLDKGCWTPVEKFGIEHG-----WQVGEVNANGSFDVLLDGKKA 292

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 293 GHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTVNGIT 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 350 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAALPE------ 399

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I      GD ++V  SN 
Sbjct: 400 SLKGADQVFCYAGGVDWDVAEALAPLGGKLHVGQDFDAFVAEIVKHAEAGDHILVM-SNG 458

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 459 -GFGGIHGKLLEALK 472


>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
 gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
          Length = 465

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 124/347 (35%), Gaps = 39/347 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GKTTT  +++  + +  +     G+    +     LA +  +    + EL  
Sbjct: 119 IIAVTGSDGKTTTTTLISKMMEAAGRKVFLGGNIGAALLPQ--LADVTPEA-VAVVELSS 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  +R       P +AV+T + P HL +   ++E   AK  I           L Y++
Sbjct: 176 FQLISMRR-----SPKVAVVTNVTPNHLDHHKDMQEYIDAKRNILLWQVPPCRAVLGYEN 230

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHG 287
                +++      +           A  +      C     +   V  + +        
Sbjct: 231 EISRSMQSDCKGEQVWFTRLHETDNGAFLRAEDDTLCYAENGTVTPVVARSE-----VKL 285

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N+L  +  V      V+   +  S F   E R +  R        T  ++S  
Sbjct: 286 RGLHNVENLLAAIAAVWGR-VPVEAMRQVASTFTGVEHRIEPVRTL---DGVTYYNDSIA 341

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++P    A +    Q       + I + G     G   +  +  LA  + L ++  + L 
Sbjct: 342 SSPTRTIAGLRSFDQ-------KIILIAG-----GYDKKIPYEPLAPEI-LAHVKTLVLM 388

Query: 408 GFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVV 447
           G     ++ A+          + + +++ M       +++ V GDVV
Sbjct: 389 GATAPRIEKAVREHPDFPNSDLKIVHADNMQDAVEKARAAAVPGDVV 435


>gi|15679903|ref|NP_275877.1| UDP-MurNac-tripeptide synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|7482867|pir||B69198 UDP-N-acetylmuramyl tripeptide synthetase related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
          Length = 450

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 137/433 (31%), Gaps = 56/433 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVAS---IGSLSIPVFGVD--DVLGALNKLAVAARLRSKATII 111
           I  A ++G   ++       S        +PV  VD  +   AL       R    +  +
Sbjct: 28  IEIASERGVSAIITQDLRGKSSRLAEEHGLPVILVDRIENANALALSWTIERFAPSSRRV 87

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYAC------IGSYNNHIGVPLTLARMPVD--VDFG 163
            +TG+ GK+TT  M+   + +   +           +      V   +A    D   +F 
Sbjct: 88  VVTGTNGKSTTTHMIHHIIETTGASSYTNTDSRSEFNTLIDPVVSQQIAEASSDGAPEFM 147

Query: 164 IFELGMSH-------LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           + E+               R +T  + P + VIT +A  H+     +E++    A     
Sbjct: 148 VIEVSEVQGWLGRVMRDHARMMTAAIGPEVVVITNVAMDHIGLVESVEDVFREVAGALRA 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +E +G   LN DD   E ++A +H     ++  +G      +         +     + +
Sbjct: 208 IE-SGVAVLNADD---ERVRAMAHVNPGLSVVFYGSDSPVRYDGEGIHIGGD-----LII 258

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             + +         H  QN L        L    +     +  + P + R          
Sbjct: 259 PAEELPFR----SEHFIQNTLAAAAACLELGFSPEDIRMGVKTYRPLKRRFSVLMTE--- 311

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEV 395
               L+ + +  NP+ ++     +   + +  GR   V       GE     +   LA+ 
Sbjct: 312 ---PLVIDDFAHNPSGIRF---TVRSAAANLRGRLWVVNAIRGSRGEDINVMNAAALADS 365

Query: 396 LSLYNISHVWLSGFHVLALKDAL-------------PRSIHVHYSETMDGLFLFIQSSLV 442
           L   N   +  S   V+  ++ +              R     + E +      +  +  
Sbjct: 366 LRGLNAELIVTSSSDVVDEQNRVLENERRAFLGVLDERGASYIHVEKLRDALRMVLDAAK 425

Query: 443 DGDVVVVKSSNSC 455
             D +++  +   
Sbjct: 426 PHDTILLLGAQGM 438


>gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
 gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
          Length = 523

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 141/470 (30%), Gaps = 63/470 (13%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++  A   GA   V         G        V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPEGKGMH---ALVV 90

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN 145
            DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I     A   S ++
Sbjct: 91  RDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDD 150

Query: 146 ------------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                        +  P +L      R  VD       + +S     +     +   +  
Sbjct: 151 IVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGF 210

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIK 245
              I P H+         +    K ++     K     +N   D F E+  A +      
Sbjct: 211 FLNITPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAMSDHFDEIYAAATTTTNPD 267

Query: 246 TIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGY 290
           +IY F ++        +  DF+ +  +   +++  ++    +         +     IG 
Sbjct: 268 SIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIGD 327

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    +    +     ++  +           G+            ++D  Y  N 
Sbjct: 328 FNEMNGTAAIIGAGLAG---ESYAECAKGIRHVTIPGRMETLPSKNHGTVIVD--YAHNK 382

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGF 409
           ASM A +S +         + I V+G   + G      F   L    +   ++       
Sbjct: 383 ASMIALMSFMQ--REFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYANKAFLTTDDPGFE 440

Query: 410 HVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
             + +   +   I     +       +       +     D+V++  K +
Sbjct: 441 DPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLICGKGA 490


>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii RML369-C]
 gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
           RML369-C]
          Length = 450

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 116/343 (33%), Gaps = 34/343 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + + +         ++A+TG+ GK+TT  +++  LS     Y   G+          + +
Sbjct: 92  SDIDLFFEKSKGLNLLAVTGTNGKSTTTALISHILSDNGLDYPVAGNIGVP------VLQ 145

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + EL    L     L       IAV+  I P HL     +E   +AK++IF+
Sbjct: 146 AKASKGGYVLELSSFQLD----LVKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFD 201

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++K     +N D+ +   +           +  F  +K  +  +         ++ E  
Sbjct: 202 RMDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKILEKGISIVNDIITDNFFE-H 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +  K +       G H ++N+  +  +  I+  +    I+++S F    G   R +   N
Sbjct: 261 ISFKLISNK-SLQGIHNSENIAASYAVARIIGLEPVKIIESISSFQ---GLPHRMQYLGN 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S  +N  +   +I  L  I     G  IA      E G           E 
Sbjct: 317 IDDINFYNDSKASNAIAAVQSIKALDNIYWLAGG--IA-----KEGG----------IEE 359

Query: 396 LSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           +  Y   I   +  G       +     I     + +   F  
Sbjct: 360 IKPYFSKIKKAYFYGQAKEMFANTAKDIIDFVICDDLKQAFEL 402


>gi|332704503|ref|ZP_08424591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 435

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 112/343 (32%), Gaps = 57/343 (16%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+A+TG+ GKTTT  +    L    K     G+    +   L         D  + E+ 
Sbjct: 114 PILAVTGTNGKTTTVSLCGHILRESGKRVFVGGNIGTPLSEYLLGGE---RADILVLEVS 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF--LN 226
              L   R      +PH+ V+   +  HL     +EE   AK ++F    +       LN
Sbjct: 171 SFQLQNCRTF----KPHVGVLLNFSANHLDYHESMEEYLEAKLKLFARQTEQDLAIAPLN 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     L+A+      +  Y                           +     E    
Sbjct: 227 MKDE----LEARGFTKAKRVYY---------------------------VPSNRFEGA-R 254

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   NM              D A  A+  F   +    R    +  G    +D+S 
Sbjct: 255 LLGVHNKANMEAAWLACRAFGVSDDQARAAVMSF---KPLSHRIEPVIETGGVLFVDDSK 311

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                +M AAI+   +       R +A  G + + G+++      L  +L    +  V L
Sbjct: 312 ATTIDAMAAAITAFDR-----PVRLLA--GGVWKGGDVAA-----LVPLLKDR-VKSVGL 358

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G      + A    + + +  T++     + +    GDV+++
Sbjct: 359 FGKAREVFEGAWQGHVPLFWEPTLEPAVKRLYAEAQPGDVILL 401


>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60390525|sp|Q7N145|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 436

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++     +        G+          L  +       
Sbjct: 101 REATAPIVAITGSNGKSTVTSLVGEMAKAANWQVGVGGNIGLP-----ALELLKKSCQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ +    A +  +   H+  +  G+ +  +AK  I+   ++   
Sbjct: 156 VLELSSFQL----ETTYSLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQAKR--- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D                   SFG           ++  SE ++++V  Q     
Sbjct: 209 CIVNAQDPL-----TLPEMGMDSRCVSFGVDCG------DYQLDSENAFLKVHNQSLLAT 257

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L+ L +   +    + ++   +      G   R++ A        I
Sbjct: 258 NEIKLTGRHNYANGLVALALADAVGIPREASL---ATLTVYPGLDHRFQLARLNKGVRWI 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA+  L     + EG    +LG   +  + S        +     N  
Sbjct: 315 NDSKATNVGSTMAALDGL-----NLEGTLYLLLGGDGKSADFSP------LKPFLCGNKV 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   LV GD+V++
Sbjct: 364 QLYCFGRDGKQLAQLRPE--IATLTETMEQAIRDIAPRLVAGDMVLL 408


>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|158513249|sp|A3DE94|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           thermocellum ATCC 27405]
          Length = 466

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 126/367 (34%), Gaps = 48/367 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I A+TGS GKTTT  ++   L          G+    +   L+      D D  + E
Sbjct: 116 PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL---LSKIEEIKDTDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T    P++AV+T ++P HL     +EE  SAK  IF        + LN
Sbjct: 173 LSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +D+        ++       +  F +     K A  +         ++  E+    K+ +
Sbjct: 228 FDNDITREFAGEAKG----DVVYFSRKTVLEKGAMLKDDMLVFRDGETETEI---AKASD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +V  G+  H  +N L     V     D D   K  + F   E    R             
Sbjct: 281 IVIPGV--HNVENFLAATAAVIDC-VDRDVIRKVATTFTGVE---HRIELVREINGVKFY 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  ++P    A ++           + I + G     G   +  +  L  V++   + 
Sbjct: 335 NDSIASSPTRTIAGLNSFKD-------KVILIAG-----GYDKKIPYDALGPVIAE-KVK 381

Query: 403 HVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVK-SS 452
            + L G     ++  L              +    +++            GDVV++  +S
Sbjct: 382 CLVLIGQTAPKIEKVLRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSPAS 441

Query: 453 NSCGFYR 459
            S   ++
Sbjct: 442 ASFDMFK 448


>gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
 gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
          Length = 460

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 149/453 (32%), Gaps = 56/453 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
                DSR +   + FF         + F+   ++K   L+  +  +             
Sbjct: 9   RNFCTDSRLLKRNDVFFDFLSNSKKINPFLKSIIKKKPSLIFSSIKVNYRNS------VI 62

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             ++      L      +    I A+TG+ GKT+            KK  A IG+     
Sbjct: 63  SKNIRNLYLSLIKKKYKKIPKNIFAVTGTNGKTSVANFFYQLHILNKKPCANIGTLGYFY 122

Query: 148 GVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                   +                   +   I E     L + R   + ++    V T 
Sbjct: 123 NKKRKKNNLTTPSNLDIYNFLNFINKKKIRTVILEASSHGLDQDRL--NGLKFKGVVFTN 180

Query: 192 IAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  HL     ++   ++K ++F + L+K G I  N D+    L+K K   +  K +   
Sbjct: 181 FSQDHLDYHKSMKAYLNSKLKLFRQNLKKKGNIVCN-DNIKKILIKNKISKISFKYVL-- 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                   ++   K+ + ++ +++  +        + IG    +N+  ++ +       +
Sbjct: 238 DNKIKYPVKIINVKKNNSKTLIKLNFKNNIYTFNINLIGQFQIENLYQSIILALSSGLKI 297

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               K L    P EG   R     N+     ID  Y   P  +K  +  L     +   +
Sbjct: 298 KEIFKVLEKVKPIEG---RLNIIKNKKKTICID--YAHTPDGLKKVLETLK----NHYNK 348

Query: 371 RI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           ++  V G     G         + ++ +    + V L+  +     +  P++I     ++
Sbjct: 349 KVNIVFGC---GGNRDTDKRKKMGQIANKL-CNKVILTNDNPR---EEDPKNITKQIFKS 401

Query: 430 MDGLF------LFIQSSL---VDGDVVVV--KS 451
           +          L I+ ++    + +V+++  K 
Sbjct: 402 VKKAEVIHNRKLAIKKAIKITKEKEVLLIAGKG 434


>gi|161870032|ref|YP_001599201.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Neisseria meningitidis 053442]
 gi|161595585|gb|ABX73245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Neisseria meningitidis 053442]
          Length = 458

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK  
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +    L E  
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKSALPESLKE-- 389

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 390 ----ADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|300715069|ref|YP_003739872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
 gi|299060905|emb|CAX58012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
          Length = 451

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 141/413 (34%), Gaps = 40/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNACVEAVLERNIPYLSGPQWLHDFVLRDRWVIAVAGTHGKTTTAGMAAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V  TL + P    F + E            +  V   P 
Sbjct: 124 ILQACGLEPGFVIGGVPGNFDVSATLGKSP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I +   D   + + A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQRQFHHLVRIVPGQGKILMPDHDVNIKQVMAMGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T+       +  +Q +  K   + S  EV L G+ + EV    +G H   N +M +    
Sbjct: 240 TV-----GDSGHWQAK--KLTPDASRWEVWLDGERVAEVNWALVGEHNMHNGMMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A  AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 293 HVGIKPEDAGLALNDFINAR---RRLELRGEANGVKVYDD-FAHHPTAILATMTALRS-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
             G  R +AVL      M  MG         LA          V+L   H     V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGISKDDLAPALAR------ADEVFLLQPHHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +A  +    H+S  +D L   I      GD ++V  SN  GF  +   LL+  
Sbjct: 401 EACSQ--PAHWSPDVDVLVEMIVKVAQPGDTILVM-SNG-GFGGIHQKLLDRL 449


>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
          Length = 445

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 121/354 (34%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 96  FAGRYTDSKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGNSLALQV----AEDPH 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  +  IA+I  I P HL  ++  ++    AK  I +   K
Sbjct: 152 AVYVIELSSFQLDNM----YDFKADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTK 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++          K  +E + + ++    
Sbjct: 208 DDAFIFWNDDPIIAREIAKRHPEA--TLYPFAETHEN-----GMKGYTENNQVVIETANG 260

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     I+    +    +LS F   E    R    L  
Sbjct: 261 TFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE---HRLEKVLRV 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E++
Sbjct: 318 RGVDYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEIEELV 365

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           S   +  +   G     L       + ++  + +M+            GD V++
Sbjct: 366 SK-KVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           83/13]
 gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
 gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
          Length = 467

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGVDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWSQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|168218219|ref|ZP_02643844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
 gi|182379758|gb|EDT77237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
          Length = 458

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 121/350 (34%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  +TGS GKTTT  +++  LS         G+    +   +   +   + D  + E
Sbjct: 116 KGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPLFSNIEEIK---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   +A++T I P HL     ++E   AK  +F+   +   + +N
Sbjct: 173 LSSFQLMTMD-----VEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++   + L  ++    ++  +S  K++  D   +  K         + + GK +     
Sbjct: 228 DENEITKNLDKEAKGKVVR--FSSKKTEGEDAYYKDGK---------LYVHGKEVCKKDD 276

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            I  G H  +N L    +       +++  K    F    G   R             ++
Sbjct: 277 IIIKGMHNVENYLAAF-LAVYDEVSIESMKKVAETFG---GVHHRCEFIREVDGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  + P    A +    +         I + G   +        +           I  +
Sbjct: 333 SIASTPTRTLAGLKAFEK-------PVILLAGGYDKHVPFEPLAYE------GYEKIKAI 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     +K A  R        + V+  E+++ +    +S   +GD++
Sbjct: 380 VLFGITKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDII 429


>gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 490

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 160/485 (32%), Gaps = 71/485 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +LL  +  + +   P      + +  D+R +     F  IKG       ++ +    
Sbjct: 7   TIQNLL--VDHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAYLDNV--H 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           G   ++  T +      + +P + V +V  AL+ L++A     + +  I A TG+ GKTT
Sbjct: 60  GITGLITETKI-----DVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTT 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGMS 170
                   L      +  + S  + I  P    +   D               + + GM+
Sbjct: 115 AAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMT 174

Query: 171 HL-------GEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTG 221
           HL         ++   + +R  +     I+P H+        E+  + K  +   L+ + 
Sbjct: 175 HLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLML---LDHSD 231

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQG 278
            + +N +   F+ +   +     K +Y++ +           +    +S   V   +   
Sbjct: 232 EVIVNAETDHFDTIYTYAKKAHHK-VYTYSRQ-----MFTSEESAIHESRFTVVKSEFNE 285

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  +  G     N +  + +VS         +K           G+     +N   
Sbjct: 286 MLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKG---LDEVFIPGRMLSLPINGHG 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +D  Y  N  SM+A +S      P+  GR + V+G     G    S   D   V+S 
Sbjct: 343 VAFVD--YAHNFVSMQALLSFAQAQYPN--GRVLVVVGSP---GNKGVSRRADFGHVVSD 395

Query: 399 YNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                V+L+                        + VHY            S+  + D+V+
Sbjct: 396 L-ADVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVI 454

Query: 449 V--KS 451
           V  K 
Sbjct: 455 VAGKG 459


>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 454

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 114/359 (31%), Gaps = 48/359 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    +A ++ ITGS GKTTT  ++        +     G+    I   +          
Sbjct: 101 ALRDCQALVVGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGTAISGKVEGL---GSRG 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I  L    R +IAV+  I P HL     +E  A+AKA IFE      
Sbjct: 158 IVVAELSSFQLELIDRL----RVNIAVLINITPDHLDRHGTLENYAAAKARIFENQTGKD 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--AD---FQLRKWKQCSEQSWMEVQL 276
              L++D          + A       ++  ++   AD             +    ++  
Sbjct: 214 LAVLSWDYPMVREYGKITQAR-----VTYISTEELLADGIGLSGNDLVWSRDGKTTKIIA 268

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + +         G H  +N++  + +   +        + L  F P      R     + 
Sbjct: 269 RNE-----LQLRGKHNLENVMCGIAVGLEMGLSGPQIAEVLRGFAPVA---HRQEVVGSY 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHI 390
                I++S   NP S   A+    +         + + G      DM E  E ++    
Sbjct: 321 DGILYINDSKGTNPDSAIKALQSYEE-------PIVLIAGGKNKGLDMTEFLEEAKKRVK 373

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L  VL       +      +            V + + +D            GDVV++
Sbjct: 374 SL--VLVGKAADDL----EIIAKKIGIKNIIKAVDFEDCVDKAIA----EAAKGDVVLL 422


>gi|260220013|emb|CBA27126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 513

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 127/383 (33%), Gaps = 51/383 (13%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL  +        +  ++AITG+ GKTT   +    ++   KT A  G+    +   
Sbjct: 117 ALEALRTVRAY-----QPAVLAITGTNGKTTVTSLTGQLIAHAGKTVAVAGNIGPTLLDT 171

Query: 151 LT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           LT   +     D  + EL    L           P  AV+  +   HL     ++  A A
Sbjct: 172 LTQHLQADTLPDVWVLELSSFQLD----AAGSFEPTAAVVLNVTQDHLDWHGSMQAYAGA 227

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKA-----KSHALGIKTIYSFGKS---KNADFQLR 261
           KA IF      G + LN +D+    ++      +      +   SFG     +  DF + 
Sbjct: 228 KARIFGQ---RGMMVLNREDATVMAMRPEPVRVRLQKPQERAYISFGTDMPQRPGDFGIE 284

Query: 262 KWK------QCSEQSWMEVQLQGKSMEVVHHGI---------GYHMAQNMLMTLGIVSIL 306
                    +  E      + + +  E+    +         G H A N L  L + +  
Sbjct: 285 DVNGMVWLVRALEADETRKRRKDEEEEIHIQRLMPADALRIRGRHNASNALAALALCASA 344

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   +          G   R             D+S   N  +  AA+  L      
Sbjct: 345 GCALAPILYG---LREYRGEPHRVEPVGIINDVEFFDDSKGTNVGATVAALQGLGA---- 397

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVH 425
            + R I +LG   +  + +      LA  +  Y +  V L G     ++ AL    I + 
Sbjct: 398 -DRRIIVILGGEGKGQDFAP-----LAAPVERY-VRAVVLIGRDAPLIRAALELTGIPLV 450

Query: 426 YSETMDGLFLFIQSSLVDGDVVV 448
            +++M        +    GD V+
Sbjct: 451 DADSMASAVTLANAKAHAGDAVL 473


>gi|149190575|ref|ZP_01868844.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
 gi|148835573|gb|EDL52541.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
          Length = 449

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 147/406 (36%), Gaps = 27/406 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L  +  ++A++G+ GKTTT  ML+ 
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLKYTSGPQWLQEFLLHERWVLAVSGTHGKTTTSSMLSW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          +G    + G    L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGQSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +     ++
Sbjct: 180 TLIMNNLEFDHADIFDDLEVIKRQFHHLVRTVPGNGRILAPRKDKALGDVLGRGCWSEVE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
                   +NAD+   K K+  + S  EV L G  + EV    +G H   N LM +    
Sbjct: 240 H-----TGENADWHANKLKR--DGSHFEVYLHGSKVGEVKWELVGDHNVDNALMAIAGAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R          T+ D+ +  +P +++  +  L    
Sbjct: 293 HVGVTPDLACEALGKFINTK---RRLELKGEVNQVTVYDD-FAHHPTAIELTLGGLRN-- 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKD-ALPRSI 422
             G+ R +AVL        + +  H + LA+ L+  +   ++       ++++ A   S 
Sbjct: 347 KVGKQRILAVLE--PRSATMKRGVHKETLAQSLTQADAVFLFQPDNIDWSVEEIAHSCSQ 404

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               S+++D L   I      GD ++V  SN  GF  +   LLE  
Sbjct: 405 PATVSDSIDELVQAIVEQAQPGDQILVM-SNG-GFGGIHQKLLEAL 448


>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           entomophila L48]
 gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           entomophila L48]
          Length = 448

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 129/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA IIAI+GS  K+T   ++    +   K  A  G+          L 
Sbjct: 96  LSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAQAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +   V+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLDDSVELYVLELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +      +  +SFG +   DF+    ++   +  +  
Sbjct: 207 RGARQ---VVVNRQDALSRPLPVE-----GRPSWSFGLNA-PDFKAFGLREVDGEKHLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +        +  ++AL  F   +G   R +   
Sbjct: 258 EFQTLMPVRELKIRGAHNQSNALAALALGHAAGLPFEPMLEALREF---KGLAHRCQWVR 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      D+S   N   + AA++ +  +    EG+ + + G   +  + + +    +A+
Sbjct: 315 ERNGVNWYDDSKATN---VGAALAAIEGLGADIEGKLVLIAGGDGKGADFA-ALREPVAQ 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     L + L  ++     +T+D            GD V++
Sbjct: 371 HCRA-----VVLLGRDAERLAETLGDTVPQVRVKTLDEAVQRCAELAQPGDAVLL 420


>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
 gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
          Length = 445

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 96  FAGRYTDSKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGNSLALQV----AEDPH 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  R  IA+I  I P HL  ++  ++    AK  I +   K
Sbjct: 152 AVYVIELSSFQLDNM----YDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTK 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F     A+      K  +E + + ++    
Sbjct: 208 DDAFIFWNDDPIIAREIAKRHPEA--TLYPF-----AETYENGVKGYTENNQVVIETVNG 260

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     I+    +    +LS F   E    R    L  
Sbjct: 261 TFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE---HRLEKVLRV 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 318 RGVDYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEI-EEL 364

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + ++  + +M+            GD V++
Sbjct: 365 VNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|332885968|gb|EGK06212.1| UDP-N-acetylmuramate-L-alanine ligase [Dysgonomonas mossii DSM
           22836]
          Length = 455

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 137/367 (37%), Gaps = 46/367 (12%)

Query: 114 TGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTTT  ML   L        A +G    +    L L+      +F + E      
Sbjct: 116 AGTHGKTTTSSMLAHILKQSHLDCNAFLGGILKNYSSNLMLS---DKSEFTVIEA----- 167

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E     H + P++A+IT++ P HL  +   EE   +  +    +++ G + + ++    
Sbjct: 168 DEYDRSFHWLHPYMALITSVDPDHLDIYRTEEEYLKSFEKFTTLIQQGGALVMKHN---- 223

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YH 291
             +K          +Y++ + K  DF  +  K  + +   +     + ++ +  G+    
Sbjct: 224 --IKLSPKVGEDIKVYTYSEDKG-DFHAKNIKIGNGEIRFDFVTPKEVIDNIQLGVPVRI 280

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N +  + +  +  A  D    A+  F    G  +R+   L      +ID+ Y  +P 
Sbjct: 281 NIENSIGAMALAWLNGATPDELRHAMLTFQ---GAKRRFDFILKTDKIVMIDD-YAHHPQ 336

Query: 352 SMKAAISVLSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAE---------VLSLYNI 401
            + A+I+ + ++ P    R++  V      +   ++ F  + A+         +L +Y  
Sbjct: 337 ELAASITSVKELYPD---RKVTGVF--QPHLYSRTKDFADEFAKSLSLLDELILLDIYPA 391

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYR 459
               + G     + D +     +        L   +++     D  V++   +      +
Sbjct: 392 REKPIEGVTSKIIFDKVTCPKTLC---NKQELLPLLEN---KNDIEVLLTVGAGDI--DQ 443

Query: 460 LINLLLE 466
           L+  + E
Sbjct: 444 LLEAIKE 450


>gi|15646103|ref|NP_208285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 26695]
 gi|8134572|sp|O26027|MURE_HELPY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2314673|gb|AAD08535.1| UDP-MurNac-tripeptide synthetase (murE) [Helicobacter pylori 26695]
          Length = 447

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 138/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINNERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHQSIENYRDAKNSFF---KDEGLKVINRDETNALFNPVNAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + ++ E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLNPSISASLCYQQDLRDPNFKEIAL------MHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++T +  L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLETIVPLLENFYGVKGRLEIVHSK------PLVVVDFAHTIDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++   ++  + S Y    +  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPEMGAIASYYAHKIILTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GINDSSKVIVEKDRKKAILNALENLKDDEVLLILG 415


>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 440

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 130/349 (37%), Gaps = 41/349 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +K  II+ITG+ GK+T   M+              G+    +     L  +    +  
Sbjct: 102 RETKCPIISITGTNGKSTVATMVKKIAEKSGYKVFLGGNIGFPV-----LEMLNQKANLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++  IAV+  I   HL  +  G E+    K  I+   E    
Sbjct: 157 ILELSSFQL----ETTFSLKSKIAVVLNITEDHLDRYPEGFEQYKKIKLSIYNQAE---- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +       +    K      K   SFG  +N ++ +   K+ +      +  + K + 
Sbjct: 209 --ICL--IKLKKGGKKPFDTQFKKYISFGICQNNNYHINYEKEKA-----ILYCKNKKVL 259

Query: 283 VVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +    GYH  +N L++L I   +  + + AI  L  F    G   R++        +
Sbjct: 260 DTSNMFLNGYHNYENALISLAISDAMKFNREIAINTLKQFS---GLPHRFQTVHINNNIS 316

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S + N  S K A+  L     + +G    +LG     G+   S    L E      
Sbjct: 317 WINDSKSTNVDSTKVALQNL-----NIKGTIWLLLG-----GDGKSSNFNILKEYFEKLK 366

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G   L+L   L +   V Y ET+    + I   +  GDVV++
Sbjct: 367 I-KIYCFGKDGLSLSK-LCKKKSV-YVETLKQAIILISKKIQPGDVVLL 412


>gi|89055254|ref|YP_510705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Jannaschia
           sp. CCS1]
 gi|118595660|sp|Q28NN2|MURD_JANSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|88864803|gb|ABD55680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jannaschia sp.
           CCS1]
          Length = 460

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 104/355 (29%), Gaps = 37/355 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   +   ++A+TGS GK+TT  ++   L          G+    +         P+D 
Sbjct: 108 WAFHDTPPRVVAVTGSNGKSTTSALIAHILEEAGTPVQLAGNIGRGVLDI----EPPIDG 163

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL          L   + P IAV T ++  HL    G+    +AK  +F      
Sbjct: 164 EVIVIELSSYQ----TELARALTPDIAVFTNLSADHLERHGGMGGYFAAKRRLFSEGGPE 219

Query: 221 GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +  D+   + L  +         +      K        W   + + W+    +G+
Sbjct: 220 -RAVIGVDEIEGQYLAGQLVEGPEDGRLIRVSSGK---LSGPGWDVSTRKGWLSEFRKGR 275

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +  V    G H  QN     G+   L         A + F     R +R     
Sbjct: 276 QAASIDLRGVPGLPGAHNHQNAACAYGVCRALGLAPRVIEAAFATFEGLPHRSQRV---A 332

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   N  +   A+    +I     G          E     ++       
Sbjct: 333 EINGVFYVNDSKATNVDAATKALGAFKRIRWICGG---------LEKDGGLEALWEAAGH 383

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V         ++ G    A    L   I       M        +    GD V++
Sbjct: 384 VAKA------YVIGREAEAFALHL-GDIPKDVCGDMATAVARASADAQPGDTVLL 431


>gi|298488533|ref|ZP_07006563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 448

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 128/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPSDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G     ++S   N  +  AAI  L       +G+ + + G   +  + S +    +AE
Sbjct: 315 EHGGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-ALRAPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
           ananatis AJ13355]
          Length = 438

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 130/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---ALSLLKAPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTHSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQ---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD     ++            SFG        +  +    +Q  + ++ +G+ + 
Sbjct: 209 CVVNADDGMTMPVRGADA-----RCVSFGID------IGDYHLNKQQGSIWLRAKGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     T++ AL+ +    G   R++         
Sbjct: 258 NTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYS---GLPHRFQLVHQSRGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L        G    +LG   +  + S      LA  L    
Sbjct: 315 WINDSKATNVGSTEAALKGL-----EVNGTLWLLLGGDGKSADFSP-----LATYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G    AL  AL   + V  ++T+      I   +   D+V++
Sbjct: 365 I-RLYCFGRDGDALA-ALRPDVAVR-TDTLQQAMEQIARQVQPDDMVLL 410


>gi|313890856|ref|ZP_07824480.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120754|gb|EFR43869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 123/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKT+T  +L   L +I  T   IG             R   +  + +FE     
Sbjct: 108 GVAGAHGKTSTTGLLAHVLKNITNTSYLIGDG---------TGRGSANAQYFVFE----- 153

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GIE++ SA  +  + ++K   +F+  +D  
Sbjct: 154 SDEYERHFMPYYPEYSIITNIDFDHPDYFTGIEDVFSAFNDYAKHVQK--ALFVYGEDEE 211

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + + + +       IY +G  +N DF      + +  S  +V+   + +   H    G 
Sbjct: 212 LKKITSSA------PIYYYGFEENNDFIAFDITRTTNGSDFKVKHDDQIIGQFHVPAYGR 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + I   D++   K +  F   +      R        T+I + +  +P
Sbjct: 266 HNILNATAVIANLYIAGVDMELVAKHMVTFSGVK-----RRFTEKIINDTIIIDDFAHHP 320

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLY 399
             + A I    Q            PH   R IA+L +  +    + S +   +       
Sbjct: 321 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQALNEADSVYLAQIYGSAREV 380

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +   V +       +K A      V   E +  L         D  V V   +     Y 
Sbjct: 381 DKGEVKVEDLAARIIKPA-----QVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 429


>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 448

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKFLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      ++S   N  +  AAI  L        G+ + + G   +  + S      +A+
Sbjct: 315 ERNGVGYYNDSKATNVGAALAAIEGLGS---DIGGKLVLIAGGDGKGADFS-GLRAPVAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 YCRAA-----VLLGRDAELIAQALGDAVPLIRVDTVQAAAERSAELAQRGDAVLL 420


>gi|253997650|ref|YP_003049714.1| UDP-N-acetylmuramate [Methylotenera mobilis JLW8]
 gi|253984329|gb|ACT49187.1| UDP-N-acetylmuramate [Methylotenera mobilis JLW8]
          Length = 463

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 137/376 (36%), Gaps = 40/376 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI---- 164
           ++A+ G+ GKTTT  ML   L          IG    +  V   L ++PV     +    
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEYAGLAPGFLIGGVPENFSVSARLPQVPVQDKNSVSPFF 164

Query: 165 -FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             E            +  V  RP  AV+  +   H   F  +  I      +   + + G
Sbjct: 165 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFEDLSAIEKQFHHLVRTVPQQG 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N  ++  + +  K     +     FG     D+Q    +        +V  +G+  
Sbjct: 225 LVVANGKETSLQRVLDKGCWTPVDK---FGTDD--DWQATNAQGDG---SFDVIYKGQMQ 276

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L ++         VD +I AL+ F   +   +R           
Sbjct: 277 GHVAWGLLGEHNRMNALASIAAARHAGVAVDVSIAALTEFKNVK---RRMEVRGESRGVV 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLY 399
           + D+ +  +P +++  I+ L   +  G  R +AVL    E    +    +   A   SL 
Sbjct: 334 VYDD-FAHHPTAIETTIAGLR--AKVGAARILAVL----EPRSNTMKLGVMKNALPASLA 386

Query: 400 NISHVWLS----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               V+      G+   A   ++     VH  + +  L   I+ ++V GD V++  SN  
Sbjct: 387 QADLVFCYQANLGWDAGAALASIAHKTQVH--DDLAQLIQAIKQAVVAGDHVLIM-SNG- 442

Query: 456 GFY----RLINLLLEE 467
           GF     +L++ L ++
Sbjct: 443 GFGGIHQKLLDALKQD 458


>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 441

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 114/345 (33%), Gaps = 42/345 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +      +  K     G+          L  +  D D  + E
Sbjct: 102 NTPVLAVTGSNGKSTVATLAYEMCIAGGKKALLGGNIGTP-----ALELLEKDADIIVLE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH +RP +A +  ++  HL     +     AK  I+   +       N
Sbjct: 157 LSSFQL----ESTHTLRPLVACMLNLSDDHLDRHGDMLSYQRAKLRIY---KDARFSVCN 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD       A +  + I     FG S +   +   W + + Q    + L GK+      
Sbjct: 210 RDD-------AATWPMTINPDVMFGLSSSE--RGLSWDKDTAQ----LLLDGKAYLDSQA 256

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N+     +  +   +++    A   F    G   R +          I++
Sbjct: 257 CMLVGEHNMLNIQAATAMTMLAGIELEAIKSAAMNF---AGLAHRCQTVAMSSNVRWIND 313

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI  L   +P  +G+ I + G   +  + S             + +S +
Sbjct: 314 SKATNVGATIAAIDGL---APTCKGKLILIAGGDGKGADFSPLEER------FNHQVSEL 364

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     L    P S   H    ++       S       V++
Sbjct: 365 ITLGKDGPELAKLKPSS---HQVVNLEDAVQLAASLASKDSTVLL 406


>gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
 gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
          Length = 464

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 116/375 (30%), Gaps = 41/375 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV     +          +       ++A+TGS GK+TT  ++   L  + +     G+
Sbjct: 95  VPVDNDIGLFFQSFATEDWSNFDIAPRVVAVTGSNGKSTTSALIHHILEHVGRPATLAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +         P D +  + EL        R LT    P +AV T ++  HL    G
Sbjct: 155 IGRGVLDIDP----PHDGEVVVLELSSYQTDLARSLT----PDVAVFTNLSEDHLDRHGG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +    +AK  +F        I    +D    L    +       +     ++        
Sbjct: 207 MGGYFAAKRRLFAEGGPDRAIVGVDEDEGLSLAGQLAEGRADDRVIRISVAQK--LTGPG 264

Query: 263 WKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           W+  + + ++    +GK      +  V    G H  QN      +   L           
Sbjct: 265 WQVFARKGFLSEYRKGKQIASIDLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVI---E 321

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-- 375
           +  H  +G   R +    +     +++S   N  +   A++    I     G     L  
Sbjct: 322 AALHSFQGLPHRSQLVGEKDGVRFVNDSKATNADAAAKALAAFPSIRWICGG-----LEK 376

Query: 376 -GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
            G M  + + S S             +   ++ G    A    LP  +      TM    
Sbjct: 377 DGGMDALRDASAS-------------VVKAYVIGREAAAFAMKLP--VEAEICTTMAQAV 421

Query: 435 LFIQSSLVDGDVVVV 449
                    GDVV++
Sbjct: 422 EKAAREAEAGDVVLL 436


>gi|189464540|ref|ZP_03013325.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
 gi|189438330|gb|EDV07315.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
          Length = 459

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/405 (12%), Positives = 136/405 (33%), Gaps = 38/405 (9%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +VV T  V    +    V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKNMESTLVVYTPAVPQKHAEL--VYFRNNGFEIQKRAQVLGTITHNSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M    L        C            T   +     + + E       E
Sbjct: 119 GTHGKTTTSTMTAHLLYQS--HVGCTAFLGGISKNYDTNLLLSQSSPYTVIEA-----DE 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H + P+++VIT   P HL  +   E    +       ++  G + ++ D      
Sbjct: 172 FDRSFHWLSPYMSVITATDPDHLDIYGTEEAYLESFRHYTTLIQSGGALIIHKD------ 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +  K        +YS+ +++  DF     +  + + +++       + ++          
Sbjct: 226 IALKPDVQAGVKVYSYARTEG-DFHAENIRIGNGEIFIDFIAPDTRINDIQLGVPVSINI 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +PA +
Sbjct: 285 ENGVAAMALAHLNGVTDEEIKQGMASFRGVD---RRFDFKVKNDKVVFLSD-YAHHPAEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHV 404
             ++  +  +  + + +  A+      +   ++ F+ + A          ++ +Y     
Sbjct: 341 AQSVKSIRDL--YQDKKITAIF--QPHLYTRTRDFYKEFANSLSLLDEVILVDIYPAREQ 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     + D L   I     +  + +   +    ++   V++
Sbjct: 397 PIPGVTSQLIYDNLRPGIEKCMCK-KEDILELLSQKQIE---VLI 437


>gi|253564350|ref|ZP_04841807.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|251948126|gb|EES88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|301161369|emb|CBW20909.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 638R]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 118/352 (33%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R  IAV+  I P HL  +   ++   +AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YNFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTS 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K         +S  K + +   +   +       +   +   
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVEDHEV-----VITEPIAFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L      ++     +   KALS F   E    R          
Sbjct: 262 MEQEQLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVE---HRLEKVARVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ E++   
Sbjct: 319 DFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|238784570|ref|ZP_04628577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
 gi|238714536|gb|EEQ06541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
          Length = 438

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 128/349 (36%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  ++AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 101 RENQVPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP-----ALTLLKQENQLV 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++ AL+ F    G   R++         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLTALTTFT---GLPHRFQLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGDH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P    +  +ETM+   + +  SL  GD+V++
Sbjct: 365 I-KIYCFGRDGDELAELRPEVSQL--TETMEQAMVLLSKSLAPGDMVLL 410


>gi|329768577|ref|ZP_08260064.1| UDP-N-acetylmuramate-alanine ligase [Gemella haemolysans M341]
 gi|328836618|gb|EGF86277.1| UDP-N-acetylmuramate-alanine ligase [Gemella haemolysans M341]
          Length = 434

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 115/310 (37%), Gaps = 33/310 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
               +L S+   IAITG+ GKTTT  M +        T   IG    H            
Sbjct: 92  QFLGKLLSEIPSIAITGAHGKTTTTTMTSNIFKHSHVTSYLIGDGTGHG---------EK 142

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + ++ I E    +   + +      P  AV+T I   H   F+   ++  A       ++
Sbjct: 143 NSEYMIAEACEYYRHFLAY-----HPDYAVVTNIDFDHPDYFNDEHDMFDAFQSFVNQVK 197

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              T+ +  DD     L ++      KTI  +G +   D+Q++  +  SE S  ++    
Sbjct: 198 N--TVVICGDD----RLASQLKPAQAKTIK-YGFNDGNDYQIKNVQTTSEHSKFDIYKNS 250

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           + +        G H   N    + +  +    V+   ++LS + P E R   ++      
Sbjct: 251 ELLGTFTMSVFGLHDISNATSAIALADLNGISVEKIQESLSQYKPAERRFSEHKI----- 305

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             +++ + Y  +P+ +KA I+       + +   IA+          +  F  + AE L 
Sbjct: 306 GNSVVVDDYAHHPSEIKATINSAR--RKYADKEVIAIF--QPHTYTRTAKFLNEFAESLE 361

Query: 398 LYNISHVWLS 407
                 V+L 
Sbjct: 362 T--ADKVFLC 369


>gi|183599903|ref|ZP_02961396.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
 gi|188022178|gb|EDU60218.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
          Length = 441

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 117/347 (33%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A IIAITGS GK+T   ++     +   +    G+          L+ +       
Sbjct: 106 READAPIIAITGSNGKSTVTSLVGEMAKAAGISVGVGGNIGIP-----ALSLLNQGHQLY 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+ +   AK  I+        
Sbjct: 161 VLELSSFQL----ETTSSLQALAATVLNVTEDHMDRYPLGLAQYRDAKLRIYHN---AAN 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D               +   SFG      +   + +    +    + +      
Sbjct: 214 CIVNAQDPL-----TLPRDRRHEACISFGVDSGDYYFDTQQRLLVAKGQAIIDVAD---- 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H  G H   N L  L +  I   +    +    V     G   R++  L       I
Sbjct: 265 --MHLTGQHNYTNALAALALADIAGIERKACLD---VLKNYAGLMHRFQLVLLNNGVRWI 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L       +G    +LG   +  + S      L   L+  N+ 
Sbjct: 320 NDSKATNVGSTEAALNGLK-----VDGTLHLLLGGDGKAADFSP-----LKPYLAQDNV- 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+  G    AL    P    +  +ETM+    ++   L  GD+V++
Sbjct: 369 RVYCFGRDGKALAQLEPEKSVL--TETMEQSMRYLAPHLKSGDMVLL 413


>gi|325134330|gb|EGC56976.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M13399]
 gi|325206033|gb|ADZ01486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M04-240196]
          Length = 458

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 128/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +   + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P ++K  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIKTTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|315606654|ref|ZP_07881665.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccae ATCC
           33574]
 gi|315251664|gb|EFU31642.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccae ATCC
           33574]
          Length = 458

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 145/415 (34%), Gaps = 47/415 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I HA +K A  +VV T  + +        F  +       +  V   L      + + 
Sbjct: 61  DEIPHACKKPASTLVVYTPAIPADHKEL--TFFREGGFEIEKRAQVLGTLTRTHKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    +   ++   A +G  + + G    L+      DF + E       
Sbjct: 119 GTHGKTTTSTMCAHIMHQSQQDCNAFLGGISKNYGTNYILS---DKSDFVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P ++VIT+  P HL  +   E    +     E ++  G + L       +
Sbjct: 171 EFDRSFHWLHPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQPGGALIL------HK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            L+ + H      +Y +   +  DF     K  + +   +     + +  V  G      
Sbjct: 225 NLEMQQHVQEGVRVYEYSLDEG-DFHAENIKIENGEITFDFISPVECVRNVMLGQPVPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +     +  +    G  +R+   +       + + Y  +P  
Sbjct: 284 IENGVAAMAMAQLNGCTAEELRYGMKTY---AGVDRRFDFKIKNDRHVFLSD-YAHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
           +  +   + ++    + R+I A+      +   ++ F+ D A  LSL         Y   
Sbjct: 340 IYQSAKSIREL---YKDRKITAIF--QPHLYTRTRDFYQDFANSLSLLDEVILCDIYPAR 394

Query: 403 HVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              + G     + D L   +    +H     + +   ++S   D DV++V  +  
Sbjct: 395 EKPIEGVTSKLIYDNLKPGVEKSMIH----KEDVLDLVKS--RDFDVLLVLGAGD 443


>gi|265764983|ref|ZP_06093258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
 gi|263254367|gb|EEZ25801.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 118/352 (33%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R  IAV+  I P HL  +   ++   +AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YNFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTS 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K         +S  K + +   +   +       +   +   
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVEDHEV-----VITEPIAFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L      ++     +   KALS F   E    R          
Sbjct: 262 MEQEQLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVE---HRLEKVARVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ E++   
Sbjct: 319 DFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|238650901|ref|YP_002916757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
 gi|238624999|gb|ACR47705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
          Length = 500

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 128/409 (31%), Gaps = 83/409 (20%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++V    S +IP+    D+L A                IAITG+ GK+TT  +++  L+
Sbjct: 77  HEIVNIAKSFNIPITSDIDLLFA---------KSKNLKFIAITGTNGKSTTTALISHILN 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S    Y   G+        ++  +     D  + EL    L  ++  T      IAV+  
Sbjct: 128 SSGLDYPVAGNIG------VSALQAKASKDGYVLELSSFQLDLVKTFTA----KIAVLLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL     +    +AK++IF+ +++     +N D+ +   +  K        +  F 
Sbjct: 178 ITPDHLDRHQDMPCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFS 237

Query: 252 KSK--NADFQLRKWKQCS---EQSWMEVQLQGKSM------------------------- 281
            ++       +   K  +   +    E+Q   +S                          
Sbjct: 238 VTQILENGISVVDDKISANFFDDISFELQHNSESFRQDEFQGEPAEPECIKIREHRQDLQ 297

Query: 282 ------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                           +  G H  +N+  +  +  I+  +    ++++S F        R
Sbjct: 298 NSLVSSFMHYAVPFNKNLQGIHNCENIAASYAVAKIIGVEPKKILESISSFQSLP---HR 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   +    +  ++S   N  S   +I  L  I     G          E G       
Sbjct: 355 MQYIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGI-------PKEGG------- 400

Query: 390 IDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
               E +  Y   I   +  G       +     +     + ++  F  
Sbjct: 401 ---IEEIKPYFSQIKKAYFYGQAKEIFANTAKNIVDFVICDNLEQAFDL 446


>gi|269122885|ref|YP_003305462.1| UDP-N-acetylmuramate/alanine ligase [Streptobacillus moniliformis
           DSM 12112]
 gi|268314211|gb|ACZ00585.1| UDP-N-acetylmuramate/alanine ligase [Streptobacillus moniliformis
           DSM 12112]
          Length = 445

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 111/359 (30%), Gaps = 46/359 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  + T+A        A  G     I   ++        D+ I E   S
Sbjct: 107 IAVAGTHGKTTTSSLATVAFLDKDPYVAVGG-----IIPEISSNSKVGSSDYFIAEADES 161

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +      + P+ ++IT I   HL     +E I  +  +  +  +    +   +D  
Sbjct: 162 DNSFL-----YMNPYYSIITNIEADHLEFHGSLENIKKSFGQFIKQTKYK--VLACFDCE 214

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
                  +        +  +   +          +     +  ++ +    G  +     
Sbjct: 215 -------EIRTYSDDKLVFYSVDEKNKDKVSIYAKNIHSLNSITYFDAVKNGIELGTFKL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I      D+D   + +  F    G  +RY+   ++ F  +  + 
Sbjct: 268 SIPGIHNVSNALAVIYIAHEEKLDMDNVKERIEKF---RGANRRYQVIYDEDFRII--DD 322

Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           Y  +P  + A I+               PH   R    L +  E   L+         +L
Sbjct: 323 YAHHPTEIMATINAAKMNEKKEITVIFEPHRYSRTKFFLKEFAESLALADR-----IFLL 377

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +Y+ S           L   +     V+     + L   +      G V +   + S 
Sbjct: 378 PIYSASEENTYDVSSEDLAKLIGNHSKVY---EKEKLVEILLEEDKKGKVYIFMGAGSV 433


>gi|53711599|ref|YP_097591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60679849|ref|YP_209993.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60389935|sp|Q64ZL9|MURD_BACFR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81174945|sp|Q5LIJ5|MURD_BACFN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52214464|dbj|BAD47057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60491283|emb|CAH06031.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 118/352 (33%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R  IAV+  I P HL  +   ++   +AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YNFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTS 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K         +S  K + +   +   +       +   +   
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVEDHEV-----VITEPIAFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L      ++     +   KALS F   E    R          
Sbjct: 262 MEQEQLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVE---HRLEKVARVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ E++   
Sbjct: 319 DFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
 gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
          Length = 437

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 120/372 (32%), Gaps = 39/372 (10%)

Query: 80  SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++P     V+  +  L ++ +  R  +K    A+TG+ GKTT   ML   L   K  +
Sbjct: 73  KYTVPFVRYFVEHKVKILTEVEIGYRYATKFKYGAVTGTNGKTTITTMLYEML---KYNH 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             I + N    +         +      EL    L  I        PH++V+  +AP HL
Sbjct: 130 KAIVAGNIGWPLSELALAYEDEEKDVALELSNFQLLGIEHFA----PHVSVVCNLAPDHL 185

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E    +K  I+E   +      N DD+                +  F  ++   
Sbjct: 186 DYMPSVESYYESKMRIYENCTEDDWFLRNVDDATVMQYAQHIPC----KVIDFSLTRQ-- 239

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                     +   + +       E   H +G +   N ++   +   L   V    KA+
Sbjct: 240 ----DVDLYRKDGTVYLHELALFEEKNFHVVGDYNLSNAMIASCMAYKLGVSVSDIQKAI 295

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F P E    R      +      ++S   N  ++ AA++           + I +L  
Sbjct: 296 AAFSPVE---HRLEYIGEKNGVKFYNDSKATNTHAVAAALNSFD--------KNIILLAG 344

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
             + G   +       +      +      G      +D       V   ETM       
Sbjct: 345 GHDKGISFEDL-----KQYDER-VKLCVAFGETGPQFQDIFSC---VQVVETMQEALDAA 395

Query: 438 QSSLVDGDVVVV 449
            ++  + D+V++
Sbjct: 396 VANSKEQDIVLL 407


>gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 523

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 153/473 (32%), Gaps = 69/473 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGAICYVAEQPYPEGKGMH---ALIVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  +     A I S N+ 
Sbjct: 89  DVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246
             I+P H+         +    K ++     K     +N + + F E+  A +      +
Sbjct: 209 LNISPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAETAHFNEIYAAATTTTNPDS 265

Query: 247 IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGYH 291
           IY F +            DF+    +   +++  ++              +     +G  
Sbjct: 266 IYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKARKLDINGDYTLKMLGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +   + D   K +       GR +  R   +     ++   Y  N A
Sbjct: 326 NESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKSHG----MVVVDYAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----S 407
           SM A +S +   +   + + I V+G     G+   S     +E L+ Y     +L     
Sbjct: 381 SMMALMSFMQ--NEFNDPKIIVVVGAP---GDKGISRRPGFSESLTAY-ADKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSETMDGL--FLFIQSSLV---DGDVVVV--KSS 452
           G     ++ + +   I     +    L     I  ++      DVV++  K +
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKDVVLICGKGA 487


>gi|300726291|ref|ZP_07059744.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
 gi|299776488|gb|EFI73045.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
          Length = 458

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 146/410 (35%), Gaps = 39/410 (9%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I HA +K    +V+ T  + +     +     ++    + +  V   L      +   
Sbjct: 61  DEIPHACRKKDSCLVIYTPAIPASHKELLYFQ--ENGFEVVKRAQVLGTLTRTHKGLCFA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    +        A +G  + + G    L+      D+ + E       
Sbjct: 119 GTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILS---DKSDYVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H +RP ++VIT+  P HL  +   E    +     E ++  G + +        
Sbjct: 171 EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQDGGALII------HT 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            L+ K +       +++ + +  DF        + +   ++    ++++ +  G      
Sbjct: 225 NLEVKPNVSDKVKTFTYSRDEG-DFHAENININNGEITFDLVSPIENVKGIQLGQPIPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +     +  +   +   +R+   +       + + Y  +P  
Sbjct: 284 IENSIAAMAMAQLNGCTAEELKYGMQTYTGVD---RRFDFKIKNNKHVFLSD-YGHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISH 403
           +  +   L ++ P+   R+I  +     +   ++ F+ D AE LSL         Y    
Sbjct: 340 VMQSAKSLKELYPN---RKITAMFQ-PHLYTRTRDFYKDFAEALSLFDEVVLTEIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             + G     + D L   I        D +  ++++   D DV+VV  + 
Sbjct: 396 EPIPGVTSKLIYDNLKEGIEKDMI-LKDDVLDYVKN--RDFDVLVVLGAG 442


>gi|167752866|ref|ZP_02424993.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
 gi|167659935|gb|EDS04065.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
          Length = 450

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 121/386 (31%), Gaps = 48/386 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             M+  +    IPV          +++  A R   KA  I +TGS GKTTT  ++   L 
Sbjct: 76  APMIVKLREAGIPVI---------SEMEFAGRYLGKARTICVTGSNGKTTTTSLIYKILR 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 A  G+        +       D D+ + EL    L  +       R HI V+T 
Sbjct: 127 DAGYNVALGGNIGESFAYSV----ATGDYDWYVLELSSFQLDGM----FRFRAHIGVLTN 178

Query: 192 IAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------LKAKSHALGI 244
           I P HL  +    +    AK  I +          + DD           L+ K      
Sbjct: 179 ITPDHLDRYDYCFQNYVDAKMRITQNQNSRDFFIYSGDDEVIWQQLPKYDLRMKQLPFAA 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   + G     D  L   K  +      V++            G H A N +       
Sbjct: 239 KNAVASG---AGDAFLLDGKFTATVGRESVEID----TAKMRIPGLHNAYNAMAAALAAL 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      ++  F P E    R   A   G    I++S   N  S   A+  +    
Sbjct: 292 AAGVSPIRIRSSIYDFAPVE---HRLEPAGEIGGVAYINDSKATNVDSTWYALESMK--- 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-H 423
                R +  +    + G   +       +  +   +  +   G     L ++    I  
Sbjct: 346 -----RPVVWIAGGTDKGNDYEPL-----KRFAREKVHTLVCMGIDNRKLVESFTGIIPE 395

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++++D      + +   GDVV++
Sbjct: 396 IISTDSLDAAMQAARKASRPGDVVLL 421


>gi|254468605|ref|ZP_05082011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
           proteobacterium KB13]
 gi|207087415|gb|EDZ64698.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
           proteobacterium KB13]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 130/354 (36%), Gaps = 51/354 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R K  +I ITG+ GKTT   +L   LS        +G+    I   L +       D+ 
Sbjct: 103 DRKKTKLIGITGTNGKTTFCSLLASILSFNDLKSIAVGNIGIPI---LNILTTQNKFDYI 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEK 219
           + EL       I  L  +      VI  I P HL  +    +  +AK ++       L  
Sbjct: 160 VVELSSYQ---IEVLDKMTVFDYGVILNIEPDHLDRYDSFIDYKNAKLKLANHSKTILHD 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +  +N          A +  +  K           DF + + K      +   + Q K
Sbjct: 217 KESAVVND--------HANAFPIDPK-----------DFHIEEIKTD----FFTFKKQNK 253

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +    + G H  +N++  L ++ I+  ++    K  + F  ++G   R+        
Sbjct: 254 IYRIDTPYLKGVHNVKNIMYLLKLLEIMNCNISF-EKVRNFFRNQKGIPHRFEYLSIDNN 312

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +  I++S   N AS K+A++ L+       G+   + G     G+L       +    + 
Sbjct: 313 YIFINDSKATNLASTKSALNSLN-------GKIHLLFG-----GDLKNQPLDGIENFFNE 360

Query: 399 YNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             IS + L G   + +KD L        +    +++ +   I+  +   +++++
Sbjct: 361 KLIS-LNLYGKDAVIIKDYLLNKKIKFDMKCFVSLEAILESIKKIVKKDEIILL 413


>gi|74310707|ref|YP_309126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           sonnei Ss046]
 gi|118595692|sp|Q3Z5S1|MURD_SHISS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|73854184|gb|AAZ86891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sonnei
           Ss046]
 gi|323165971|gb|EFZ51751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella sonnei
           53G]
          Length = 438

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQLGDMVLL 410


>gi|238761555|ref|ZP_04622530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
 gi|238700069|gb|EEP92811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 131/350 (37%), Gaps = 38/350 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDF 162
             ++A ++AITGS GK+T   ++     +        G+     + +   LA    +   
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALTLLQQLASQKQENQL 160

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
            + EL    L      T  +R   A +  +   H   +  G+++  +AK  ++E      
Sbjct: 161 VVLELSSFQL----ETTSSLRASAATLLNVTEDHTDRYPFGLQQYRAAKLRVYEN---AK 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    ++            SFG        +  +    +Q  + ++++G+ +
Sbjct: 214 VCVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKV 262

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++ AL+ F    G   R++  L +   
Sbjct: 263 LNTREMKLSGRHNYTNALAALALADAVGIPRSSSLTALTTFT---GLPHRFQLVLERNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +I  ++  G     L +  P    +  +ETM+     +  SL   D+V++
Sbjct: 370 HI-KIYCFGRDGKQLAELRPEVSQL--TETMEQAMALLAKSLAPRDMVLL 416


>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 458

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 124/395 (31%), Gaps = 48/395 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFG--VDDVLGALN----KLAVAARLRSKATIIAITGSVGKTT 121
            +V         S  IP     + +++ A +     + +A  L  +  I AITGS GKTT
Sbjct: 72  TLVTHPWQFVAKSPGIPYHQAFIAELIKASHVIVTDVEIAYWLEERP-IYAITGSNGKTT 130

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L +        G+    +   +         D  + E+    L      TH 
Sbjct: 131 TTTLVGEMLKASGYHPIVAGNIGTPVCDVV-----DQPGDLLVLEVSSFQLEG----THT 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P  A +    PAHL      E    AK ++F          LN+D +       +  A
Sbjct: 182 FHPRGAALLNFYPAHLDYHGTYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAA 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-----GIGYHMAQNM 296
                +  F   + A F     +         V ++G     +         G H  QN 
Sbjct: 242 ----RVRGFSL-EGAPFD----EGVGVIDGALVAVRGGERTPILPVDQVALPGRHNLQNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +     A V+   + L+ F   E    R             ++S   NP + + A
Sbjct: 293 AAAAALALAAGAHVEAVARVLATFQGVE---HRLEFVREVAGVRYYNDSKATNPDAARQA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +            R +  +    + G        D++  +         L G     L++
Sbjct: 350 LKSFE--------RDVVWIAGGLDRGISFDPLLPDISGRVRAA-----VLLGETKEKLRE 396

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            L R+      ++ TM+            GDVV++
Sbjct: 397 VLARAGVSTCVFASTMEEAVREASRIAEPGDVVLL 431


>gi|167764155|ref|ZP_02436282.1| hypothetical protein BACSTE_02539 [Bacteroides stercoris ATCC
           43183]
 gi|167698271|gb|EDS14850.1| hypothetical protein BACSTE_02539 [Bacteroides stercoris ATCC
           43183]
          Length = 461

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 116/354 (32%), Gaps = 35/354 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M             C            T   +     + + E    
Sbjct: 115 LCVAGTHGKTTTSTMAAHLFHQS--HVGCTAFLGGISKNYGTNLLLSPASPYTVIEA--- 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H + P+++VIT+  P HL  +   E    +       ++  G + +     
Sbjct: 170 --DEFDRSFHWLSPYMSVITSTDPDHLDIYGTREAYLESFRHYTTLIQPGGALII----- 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             + L  +         Y++ + +  DF     +  + +  ++       + ++      
Sbjct: 223 -RKGLALQPDVQPGVRTYTYSRDEG-DFHAENIRIGNGEIVIDFIAPDTRINDIRLGVPI 280

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +
Sbjct: 281 GINIENGVAAMALAHLNGVTDEEIRQGMASFRGVD---RRFDFKIKTDRLVFLSD-YAHH 336

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           PA +  ++  + ++  + + +  A+      +   ++ F+ D A+ LSL         Y 
Sbjct: 337 PAEIAQSVKSIREL--YRDKKITAIF--QPHLYTRTRDFYKDFADSLSLLDEVILTEIYP 392

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                + G     + D L   I        + +   +       +V++V  +  
Sbjct: 393 AREQPIPGVSSQLIYDNLRPGIEKCICR-KEDIPDLLSK--KPVEVLIVLGAGD 443


>gi|29348856|ref|NP_812359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298387937|ref|ZP_06997486.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 1_1_14]
 gi|29340762|gb|AAO78553.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259344|gb|EFI02219.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 1_1_14]
          Length = 467

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 136/379 (35%), Gaps = 39/379 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              +  + + G+ GKTTT  M       S  +  A +G  + + G  L L++        
Sbjct: 109 THSSKGLCVAGTHGKTTTSTMTAHLFHQSHIECTAFLGGISKNYGTNLLLSQKSPYT--- 165

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E       E     H + P+++VIT   P HL  +   +    +       ++  G +
Sbjct: 166 VIEA-----DEFDRSFHWLSPYMSVITATDPDHLDIYGTEKAYLESFEHYTTLIQPGGAL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +       + +  +        +Y++ + +  DF     +  + + +++       +  
Sbjct: 221 II------RKGISLQPKVQAGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINN 273

Query: 284 VHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  G+      +N +  + +  +     +   + ++ F   +   +R+   +       +
Sbjct: 274 IQLGVPVSINIENGVAAMALAHLNGVTDEEIRQGMNSFRGVD---RRFDFKIKNDQVVFL 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-------- 394
            + Y  +P+ +K ++  + ++  + + +  A+      +   ++ F+ D A+        
Sbjct: 331 SD-YAHHPSEIKQSVLSIREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEV 385

Query: 395 -VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            ++ +Y      + G     + D L   I     +  + +   ++   ++  V++   + 
Sbjct: 386 ILVDIYPARETPIPGVTSKLIYDNLRPGIEKSMCK-KEEILNILKDKNIE--VLITLGAG 442

Query: 454 SCGFYRLINLLLEEFPAIQ 472
                  +  + +E   ++
Sbjct: 443 DI--DNYVPEIKKELEKMK 459


>gi|291166345|gb|EFE28391.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Filifactor
           alocis ATCC 35896]
          Length = 449

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 103/324 (31%), Gaps = 30/324 (9%)

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                     +G+  N +   +   R   +  + + EL    L  I+      + HIA  
Sbjct: 124 FKKYGLDTKVVGNIGNPVIEAV---RNADEHTWYVSELSSFQLEMIKEF----KCHIAGF 176

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             + P HL+    ++     K+ IF+   K     LNY+D +   L  K  +     +  
Sbjct: 177 LNLTPDHLNRHGSLKTYGEMKSNIFKNQTKDDYAVLNYEDDYVCHLGEKLPS----KVLY 232

Query: 250 FGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           F   +   F   L++       + +  +L  +         G H  +N+LM + +     
Sbjct: 233 FSTKREVPFGIYLKEGYIYENITGITNKLFDRK---NVLLAGNHNMENVLMAMCMAYCAN 289

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D     LS F   E    R            I++S   NP +   A+    +     
Sbjct: 290 ISFDCMKSVLSNFEGVE---HRLEFVEMIDGVRYINDSKGTNPDASVKAVEAFEK----- 341

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVH 425
               I + G M +     +       + L    +  + L G     +KD   +     V 
Sbjct: 342 --NIILIAGGMDKKVPFDKFVETFTGKHLGK--VKKLILLGETKNIIKDCAQKHGFDSVD 397

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
               M+            GD+V++
Sbjct: 398 LVNNMEEAVDVAHQQAEGGDIVLL 421


>gi|241758801|ref|ZP_04756914.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria flavescens SK114]
 gi|241321009|gb|EER57222.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria flavescens SK114]
          Length = 472

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 123/379 (32%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 117 HQHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSK 176

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  A++  +   H   F+ +  I +    +   +
Sbjct: 177 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLGAIQTQFHHLVRTV 236

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG                     +V L 
Sbjct: 237 PSEGLIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHGWQVGGVNVD-----GSFDVLLD 288

Query: 278 GKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           GK    V    +G H   N L  +        D+ TA +ALS F   +   +R       
Sbjct: 289 GKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTV 345

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +     
Sbjct: 346 NGITVYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAAL---- 397

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL +   V+    G      +   P    +H  +  D     I  +   GD ++V 
Sbjct: 398 --PASLNDADQVFCYAGGVDWDVAEALAPLGGKLHVGKDFDTFVAEIVKNAEAGDHILVM 455

Query: 451 SSNSCGF----YRLINLLL 465
            SN  GF     +L+  L 
Sbjct: 456 -SNG-GFGGIHGKLLEALK 472


>gi|255522108|ref|ZP_05389345.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J1-175]
          Length = 326

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 110/313 (35%), Gaps = 41/313 (13%)

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E +      +P  A++T I   H   F  ++++ +A   + + ++K      
Sbjct: 24  EYFALEACEYQRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFAL- 82

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD+    L           I  FG  +  +FQ +   + +  +  +V  +G+ +    
Sbjct: 83  -GDDAELRKLTLDI------PIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFE 135

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +       V+   K L  F   +      R ++ +    ++ +
Sbjct: 136 IPAYGDHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVK-----RRFSITEKANQVLVD 190

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P+ ++A ++   Q   + + + +AV          +++F    A+ L+L     V
Sbjct: 191 DYAHHPSEIRATVNAARQ--KYPDKKVVAVF--QPHTFTRTRTFLQGFADSLNL--ADEV 244

Query: 405 WLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +L           G   +A      +  H+   E  + L  +         V++   +  
Sbjct: 245 YLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAGD 298

Query: 455 C-----GFYRLIN 462
                  + ++++
Sbjct: 299 VQKFQAAYEKVLD 311


>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 448

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 124/346 (35%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 REAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-----ALDLLADDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   +
Sbjct: 160 VLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L A +        +SF  +K  DF+     +   Q W+  Q        
Sbjct: 213 VVNRADALTRPLIADT-----VPCWSFDLNK-PDFKAFGLIEEDGQKWLAFQFDKLLPVG 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + AL  F     R +  R    +   +  D
Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWVR---ERQGVSYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G         +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++ +    T+D           +GD V++
Sbjct: 375 VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLL 420


>gi|228472694|ref|ZP_04057454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276107|gb|EEK14863.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 444

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 122/350 (34%), Gaps = 37/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A IIAITGS GKTTT  ++   L     + A  G+          +A+ P +  + + 
Sbjct: 99  TDAKIIAITGSNGKTTTTTLVYHLLKEAGLSVAVGGNIGYSF--ARLVAQEPKE--YYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +I        PHIA++  I P HL  ++   +    AK  I E  +    + 
Sbjct: 155 EISSFQLDDI----TSFHPHIALLLNITPDHLDRYNYEFQNYIDAKMRITEFQQAADFLI 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD      +          +  F   K   F+   W    +  ++ V      M   
Sbjct: 211 YDADDPVTA--QEIGKGQVKAQLLPFSLEKT--FERGAWSLDEKNMYVNVNQNIFEMSTK 266

Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              I G H  +N +    +  +L    +    +L  F     R +  R          I+
Sbjct: 267 DLTIKGKHNLKNAMGATMVAKLLNVRNENIRNSLMTFQGVPHRLEFVREVE---GVRYIN 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S+  A+  + +      G    V       G+   + +  L   +S   +  
Sbjct: 324 DSKATNVNSVYYALDSMEE------GLVWIV------GGQDKGNDYTPLIPYVSK-KVKA 370

Query: 404 VWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G      +   +  +P  I  H   +M+      +    +GD V++
Sbjct: 371 IVCLGLDNQKIIQTFQSIVPTIIETH---SMEDAVQVGRGLSQEGDTVLL 417


>gi|315125601|ref|YP_004067604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
 gi|315014114|gb|ADT67452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
          Length = 444

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 121/342 (35%), Gaps = 37/342 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++A+TGS GK+T   +    L +     A  G+          L  +  D D  + EL
Sbjct: 111 KPVVAVTGSNGKSTVVTLAYEVLKTAGYKVALGGNIGT-----AVLDLLDGDFDVFVLEL 165

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  ++   A +  I+  HL  +   +    +K  I+ G E    + +N 
Sbjct: 166 SSFQLD----TTRSLKTTSATVLNISEDHLDRYDSYQAYIDSKLSIYNGAEH---LVINV 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     ++    +  +    SFG+++  D+ L    Q + ++   V+ +          
Sbjct: 219 DD-----IQTHPVSRTLAPQLSFGETQG-DYHL---AQHNNEAHFMVKDEAYLPVSTLAV 269

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L  + ++S  T        AL+ F    G   R +           ++S  
Sbjct: 270 VGKHNYLNTLAVMALLSPFTITKAHYKTALAQF---NGLAHRCQFVGEFNDVKYFNDSKA 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  AAI  L+      +   + + G        ++   +++ +     ++  +   
Sbjct: 327 TNVGATIAAIDSLAG----EQQNLVVIAGG------DAKGADLEVLKPYIEKHVKALICF 376

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G      KD +  S   H +  M       +     GD V++
Sbjct: 377 GKDA---KDLVALSAKGHLTNNMSEAVALAKQLSKSGDTVLL 415


>gi|16078584|ref|NP_389403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309394|ref|ZP_03591241.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313719|ref|ZP_03595524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318643|ref|ZP_03599937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322916|ref|ZP_03604210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|417327|sp|Q03522|MURD_BACSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|580932|emb|CAA78769.1| murD [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633891|emb|CAB13393.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484071|dbj|BAI85146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 451

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 123/378 (32%), Gaps = 45/378 (11%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV       IPV+   ++   L          + A  I ITGS GKTTT  ++   L + 
Sbjct: 89  MVQEAEKRGIPVWTEIELAYYL----------TSAKFIGITGSNGKTTTTTLIYEMLKAD 138

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +     G+      V   +A      ++ + EL    L      TH  RP I++I  + 
Sbjct: 139 SQKALIAGNIGT---VASEVAYHADGDEWIVTELSSFQLMG----THAFRPEISLILNVF 191

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL      E    AK +++     +    +N DD     L     A  +    S    
Sbjct: 192 DAHLDYHHTRENYEKAKQKVYLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLE 251

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + A  +        E            +E V    G H  +N+L  + +V    A  +  
Sbjct: 252 QGAYVKDSMIMFNGEAIL--------PLEEVV-LPGAHNLENILAAIAVVKTAGASNEAV 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L+ F   +    R +           ++S   N  +   A+S           + + 
Sbjct: 303 KKVLTSFTGVK---HRLQYVTTVNGRKFYNDSKATNILATSKALSAFD--------KPVI 351

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMD 431
           +L    + G         +       ++  V   G     L+         HV   + ++
Sbjct: 352 LLAGGLDRGNGFDDLKPYM------KHVKAVLTFGQTAPKLEKLGNELGIQHVKRVDNVE 405

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  +   +GDV+++
Sbjct: 406 QAVSAAFALSNEGDVILL 423


>gi|320093974|ref|ZP_08025801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979080|gb|EFW10596.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 457

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 128/373 (34%), Gaps = 33/373 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++    A   +    + + G+ GKTTT  ML +AL S+          +  + V   + +
Sbjct: 95  HRSEALALAATGMRFVGVAGAHGKTTTSGMLAVALRSVGA--------DPSVAVGGVVPQ 146

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                  G  ++ ++   E         P + V+T + P HL  +   E   +  AE   
Sbjct: 147 FGSGAHLGAGDVFVAEADESDGSFLNYSPSVEVVTNVEPDHLDRYGSREAFEAVFAEFAS 206

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSW 271
            L   G +    +D     L + +   GI TI ++G+    ++  D  +      +  S 
Sbjct: 207 RLVPGGALVACAEDPGASRLASHARERGITTI-TYGRPGRCAQRPDAAIEDVDSTASGST 265

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V+  G++  +     G H   N    L   + L   +      L+ F    G  +R+ 
Sbjct: 266 ARVEWDGQAAVLRLAVAGEHNVLNATAALLAGAALGLGLPEMAAGLASFT---GTARRFE 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388
                G   L D+ Y  +P  + AA+     ++    G    V      +   ++ F   
Sbjct: 323 ERGRVGSRRLFDD-YAHHPTEVAAALRQARVVAGA--GGVTVVF--QPHLYSRTRIFAAR 377

Query: 389 ------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                   D   V  +Y        G     +  ALP S+HV     M          + 
Sbjct: 378 FAEALAAADHVVVTDVYAAREDPEPGVDSTLITSALPGSLHV---PDMHEAARTGAGLVD 434

Query: 443 DGDVVVVKSSNSC 455
           +G +++   + S 
Sbjct: 435 EGGILITMGAGSI 447


>gi|255692973|ref|ZP_05416648.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides finegoldii DSM
           17565]
 gi|260621286|gb|EEX44157.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides finegoldii DSM
           17565]
          Length = 460

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 142/410 (34%), Gaps = 44/410 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +VV T  V         V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKESTLVVFTPAVPQEHEEL--VYFRNNGFEIQKRAQVLGTITHSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    L     +  A +G  + + G  L L++        + E       
Sbjct: 119 GTHGKTTTSTMTAHLLHQSHVECTAFLGGISKNYGTNLLLSQKSPYT---VIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P ++VIT   P HL  +        +       ++  G + +       +
Sbjct: 171 EFDRSFHWLSPFMSVITATDPDHLDIYGTEAAYLESFEHYTTLIQPGGALII------RK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
            +  +        +Y++ + +  DF     +  + + +++       + ++         
Sbjct: 225 GISLQPKVQPGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGVPVSIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +   + ++ F   +   +R+   +       + + Y  +P+ 
Sbjct: 284 IENGVAAMALAHLNGVTDEEIKRGMASFRGVD---RRFDFKIKNDRIVFLSD-YAHHPSE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISH 403
           +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y    
Sbjct: 340 IKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
             + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 396 APIPGVTSRLIYDNLRPGIEKSMCK-KEDILNILKDKNIEVLITLGAGDI 444


>gi|297170501|gb|ADI21531.1| UDP-N-acetylmuramate-alanine ligase [uncultured verrucomicrobium
           HF0070_15G23]
          Length = 416

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 122/379 (32%), Gaps = 40/379 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                + ITG+ GKTTT  +L   L                I    +      D ++ + 
Sbjct: 64  QGKRSLVITGTHGKTTTASLLAWILDCNGFN---PSYLIGGIPENFSQGARFTDSEWIVM 120

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +   P + +I  +   H   F+ +++I ++   +   +   G +
Sbjct: 121 EGDEYDTAFFDKRSKFLHYLPEVVLINNLEFDHSDIFNDLQQIQTSFKRLINLVPSNGLL 180

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD     L    H      I SF  S   D   R       Q+ +   L G   E 
Sbjct: 181 LVNGDDKNITPLIDVDHC----PIESFTLSHLTDLGYR-------QTGVRFVLDGFCFE- 228

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N L  + I                 F   EG  +R          T++D
Sbjct: 229 -LPLYGELNVRNALGVIYIARYCGLSNKQIQGGFDSF---EGIKRRMEVKAEIRGITVVD 284

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           + +  +P +++     L        G+RI AV          +  F  +LA+ L    I 
Sbjct: 285 D-FAHHPTAIR---ETLKAARVRFPGKRIWAVFEPRSNTTRRNI-FQDELADSLKEAEII 339

Query: 402 --SHVWLSG-------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S V  +G            L  AL           ++D +   I     +GDV+ +  
Sbjct: 340 IVSEVARAGNISEPDLLDTEKLVHALNDFGGLASCFRSVDNILEHILGYAEEGDVIFIL- 398

Query: 452 SNSCGFYRLINLLLEEFPA 470
           SN  GF  L   L++   A
Sbjct: 399 SNG-GFENLHERLVQGLKA 416


>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074270|gb|ADJ63669.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 132/402 (32%), Gaps = 56/402 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV  A+           +  ++A+ G+ GKTTT  ++T  L+          +   +I 
Sbjct: 451 RDVGEAIVSTMYEDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYID 510

Query: 149 VPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-A 195
              T                  DVD  + E   +  G +R      R  +AV+T I    
Sbjct: 511 GQRTDTGDCSGPRSARNVLFHPDVDAAVLE--TARGGVLREGLGFDRCAVAVVTNIGMGD 568

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           HL     S +E++A  K  I E +  TGT  LN  D     + A         +  F   
Sbjct: 569 HLGLSYISTVEDLAVVKRVIVENVAPTGTAVLNAADPMVAKMAASCPGA----VTFFALD 624

Query: 254 KN----ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---------HMAQNMLMTL 300
                 A  + +  +         V  QG S E      G             +N++ ++
Sbjct: 625 PTHPIMATHRAQGHRIVYRDGDAIVAAQG-SFEKRLKLSGIPLTRAGAIGFQVENVMASV 683

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D +    AL+ F    G         +    TLI + Y  NP +++A I  +
Sbjct: 684 GAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYKGATLIAD-YGHNPDAIQALIKAV 742

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFH 410
             +        I+  GD  ++    Q+        L       V L           G  
Sbjct: 743 DSMPAKRRSVVISGAGDRRDVDITRQTE-------LLGDAFDEVVLYQDQCQRGREDGEV 795

Query: 411 VLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L+  L ++      + ++G          SL  GD+ ++
Sbjct: 796 IALLRQGLSKASRTSDVKEINGEFLAIDTALGSLQPGDLCLI 837


>gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
 gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
          Length = 467

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 104/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ +++  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQVIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|320531623|ref|ZP_08032565.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136152|gb|EFW28158.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 524

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 138/398 (34%), Gaps = 52/398 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +++    A        +A+ G+ GKTTT  ML  AL+      +        IG  +   
Sbjct: 113 IHRSQALALAAQGLDFVAVAGAHGKTTTSGMLAEALTDAGADPS------FAIGGVVRAL 166

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                +  G   +  +   +  FL +   P + ++T + P HL ++   E   +A  +  
Sbjct: 167 GTGAHLGSGSALVAEADESDRSFLNY--SPRVEIVTNVEPDHLDSYGTAEAFEAAFVDFA 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSK-------------NADFQL 260
             L   G +     D+    L   + A G++ + YSFG                + D Q 
Sbjct: 225 HRLVPGGLLVACAADAGALRLAQSAAAEGLRVVTYSFGGPDTLPGGVLVGEGHVHLDIQD 284

Query: 261 RKWKQCSEQSWMEVQLQGKS------------MEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           R          +      +S            +E+V    G H+A +          L  
Sbjct: 285 RGASSTQALLTLTTATDRESAGGTGEEPSRSPVELVLAVPGDHVALDAAGAWAAGIELGV 344

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +     +AL VF    G G+R+          +ID+ Y  +P  ++A +     ++    
Sbjct: 345 EPARMARALGVFG---GTGRRFEDRGEADGVRVIDD-YAHHPTEIEALLRTARGVAQERG 400

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW--------LSGFHVLALKDA 417
           GR + VL     +   +++F     + L+L +   ++ V+          G     +   
Sbjct: 401 GR-VLVLFQ-PHLFSRTRAFADRFGQALALADAVVVTDVYPARETQADFPGVTGDTVAQR 458

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +P       +E +D     +  S   GD+++   +   
Sbjct: 459 VPGGRARFVAERLDAA-RAVADSARPGDLLLTVGAGDV 495


>gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
 gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|254463263|ref|ZP_05076679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2083]
 gi|206679852|gb|EDZ44339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 466

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 112/383 (29%), Gaps = 44/383 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               + +PV     +       +    L     ++A+TGS GK+TT  ++   L    + 
Sbjct: 88  EALQMGVPVDNDISLFFRSFATSEWDNLDVTPRVVAVTGSNGKSTTSALIHHVLEHANRP 147

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G+    +          +D +  + EL        R LT    P +AV T ++P H
Sbjct: 148 TQLAGNIGRGVLDIDP----AIDGEVVVLELSSYQTDLARALT----PDVAVFTNLSPDH 199

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKN 255
           L    G+    +AK  +F          +  D+     L  + +       +      + 
Sbjct: 200 LDRHQGMGGYFAAKRRLFAEGGPE-RAIIGIDEDEGLYLAGQMAEGPQDDRVIRISVERK 258

Query: 256 -ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             DF    W   + + ++    +G+      +  +    G H  QN      +   L   
Sbjct: 259 LTDF---GWAVFANKGFLSEYRKGRQIGSIDLRAIKGLPGAHNHQNACCAYAVCRTLGLA 315

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                   + F    G   R +   +    T +++S   N  S   A+    +I     G
Sbjct: 316 PRVI---EAGFASYPGLPHRSQIVADVDGVTYVNDSKATNVDSAAKALGAFKKIRWICGG 372

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---WLSGFHVLALKDALPRSIHVHY 426
                                +            V   ++ G         L   +    
Sbjct: 373 ------------------LEKEGGVEALANAADEVLKAYVIGREASRFAMQLA-GVKTEV 413

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
             +M+           +G+ V++
Sbjct: 414 CTSMEEAVARAMEDSSEGETVLL 436


>gi|126461548|ref|YP_001042662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|158513433|sp|A3PHS4|MURD_RHOS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|126103212|gb|ABN75890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 465

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 126/403 (31%), Gaps = 51/403 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARLRSKATIIAIT 114
             ++V +  +  +     PV          VD+ +G   +               ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +     G+    +           D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLD----LDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F          +  D+     
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGLY 237

Query: 235 LKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
           L  + S A     +      +    +   W   + + ++    +G+      +  +    
Sbjct: 238 LAGQLSVAPEDDRVIRISAGQK--LERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN          L         AL+ F    G   R +    +G    +++S   
Sbjct: 296 GAHNHQNACAAYAACRTLGLAPRQIEAALASF---AGLPHRSQTVGEKGGVRFVNDSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL 406
           N  S   A+    +I     G           +G+     +    L  V+        +L
Sbjct: 353 NVDSAAKALQAFPKIRWIAGG-----------LGKDGGIAALQPHLGSVVKA------YL 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +  + H    ETM+            G+VV++
Sbjct: 396 IGHSARDFALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
 gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
          Length = 445

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 120/352 (34%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++   + S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIIKSAGYDVGLAGNIGKSLALQV----AETPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
            + + EL    L  +    +  R ++A++  I P HL  +   ++    AK  I +   +
Sbjct: 151 KYYVIELSSFQLDNM----YKFRANVAILLNITPDHLDRYEFKMQNYTDAKMRITQNQTE 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQG 278
             +     DD       AK +       +S  K +     +   K      S  E+    
Sbjct: 207 EDSFIFWNDDPIVTKELAKYNLKSHLCPFSEFKEEGCVGFIEDGKYKLNFPSDFEMPQAD 266

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S+       G H   N L      +I+  D +T  K LS F   E    R         
Sbjct: 267 MSLR------GKHNIYNSLAAGLACNIVGIDHETLHKGLSDFPGVE---HRLEKVGKFQG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  +   A+  ++          I ++G     G+   + +  + +++  
Sbjct: 318 VYYVNDSKATNVDACWYALESMTT-------PTILIIG-----GKDKGNDYNQIKDLVKE 365

Query: 399 YNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V+L G     L D      I V  + +M       Q     GD V++
Sbjct: 366 KCAGIVYL-GADNQKLHDNFDALGIPVRDTHSMKDCVAACQELAKPGDTVLL 416


>gi|221638512|ref|YP_002524774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides KD131]
 gi|254766055|sp|B9KNJ5|MURD_RHOSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221159293|gb|ACM00273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides KD131]
          Length = 465

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 126/403 (31%), Gaps = 51/403 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARLRSKATIIAIT 114
             ++V +  +  +     PV          VD+ +G   +               ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +     G+    +           D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLD----LDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F          +  D+     
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGLY 237

Query: 235 LKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
           L  + S A     +      +    +   W   + + ++    +G+      +  +    
Sbjct: 238 LAGQLSVAPEDDRVIRISSGQK--LERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN          L         AL+ F    G   R +    +G    +++S   
Sbjct: 296 GAHNHQNACAAYAACRTLGLAPRQIEAALASF---AGLPHRSQTVGEKGGVRFVNDSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL 406
           N  S   A+    +I     G           +G+     +    L  V+        +L
Sbjct: 353 NVDSAAKALQAFPKIRWIAGG-----------LGKDGGIVALQPHLGSVVKA------YL 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +  + H    ETM+            G+VV++
Sbjct: 396 IGHSARDFALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 438

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDTDRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +   T
Sbjct: 156 VLELSSFQL----ETTFSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG        +  +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCISFGVD------VGDYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++         
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLVQEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + +      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QLDGTLYLLLGGDGKSADFTP-----LKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P       +ETM+     I   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAELAELRPE--VAVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxidans DMS010]
 gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxydans DMS010]
          Length = 413

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 139/371 (37%), Gaps = 47/371 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A I+AITGS GK+T   +L +      KT    G+       P          DF I EL
Sbjct: 74  APIVAITGSNGKSTVTTLLALMAQLSGKTVKAGGNLG----TPALDLLEGETPDFYILEL 129

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  +R L        AV+  ++P H+  +  + +   AK +IF G    G + LN 
Sbjct: 130 SSFQLETVRSLNAFA----AVVLNVSPDHMDRYDSVSDYQQAKQKIFNG---DGVMVLNT 182

Query: 228 DDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +D F + ++ +           FG  KS+  DF L ++      +  E  L         
Sbjct: 183 EDPFVQEMRIEGRNH-----IGFGLHKSEGVDFGLLQYDGAVWLAEGESPLLAIDA---M 234

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L  L + S +   +   + AL  F+    R +  R           ++S
Sbjct: 235 KIVGKHNLANALAALALGSAMALPMPAMLSALQAFNGLPHRCRLVRVL---NEVRWFNDS 291

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +  AAI+ L+      +G  + + G + +  + S     +L E L    +  V 
Sbjct: 292 KATNVGACIAAINGLAD-----DGAIVLIAGGVGKGQDFS-----ELTESLEKA-VRAVV 340

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------N 453
           L G     +  A+P  +   ++  M    L  QS    GD V++    +S          
Sbjct: 341 LLGEDADKIATAIPPQVEQIHATDMQDAVLKAQSLAQPGDNVLLSPACASFDMFTGYAER 400

Query: 454 SCGFYRLINLL 464
              F +L+  L
Sbjct: 401 GDKFEQLVRGL 411


>gi|315639620|ref|ZP_07894760.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
 gi|315484581|gb|EFU75037.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
          Length = 454

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 121/352 (34%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVD 159
           A   + A II ITG+ GKTTT  M+   L+  +        G+         ++A+  + 
Sbjct: 108 AYEIADAPIIGITGTNGKTTTTTMIGHVLNQERSNSVARLAGNIGYP---ASSVAQEAIA 164

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  I        P IAVIT I  AH+       E   AK  I + +  
Sbjct: 165 DDELVMELSSFQLMGITDF----HPEIAVITNIYEAHIDYHGSRPEYVQAKWRIQKNMTD 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + +N++ +    L   + A    T+  F      D       Q   +  + + +   
Sbjct: 221 KDYLVINWNQTELRELAKSTKA----TVVPFSTEGQVDGAYEIDGQLFFKGQLIMSVDE- 275

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + + S+     +    ALS F        R +     G  
Sbjct: 276 -----LGVPGQHNVENALAAIAVASLKQVRPEAIKAALSQFTGVP---HRTQYVGTHGDV 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+            +++ +L    + G        DL       
Sbjct: 328 RFFNDSKATNSLATRMALGGFDH-------QKLVLLAGGLDRGNSFDELIPDL------K 374

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            I  + L G     L DA  ++    + +SE ++       +    GD +++
Sbjct: 375 GIKAIVLFGQTKDKLADAAQKAGIPIIKFSENVESAVPLAFTLSEPGDTILL 426


>gi|21672497|ref|NP_660564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25090714|sp|Q8K9T2|MURD_BUCAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21623116|gb|AAM67775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 440

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 127/348 (36%), Gaps = 39/348 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +K  II+ITG+ GK+T   M+              G+    +     L  +       
Sbjct: 102 RETKCPIISITGTNGKSTVATMVKKIAEKSGYKVLLGGNIGFPV-----LEMLNKKASLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++  IAV+  I   HL  +  G E+    K  I+    K   
Sbjct: 157 VLELSSFQL----ETTFNLKSKIAVVLNITEDHLDRYPEGFEQYKKTKLSIYN---KAKI 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +       +  + K      K   SFG   N D+ +   K+ +    +      K ++
Sbjct: 210 CLI-----KLKKGEKKPFNTKSKKYISFGTCNNNDYYINYEKEKA----ILFHKNKKIVD 260

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +  + G+H  +N+L +L I   +  D      +++V     G   R++        + 
Sbjct: 261 TSNILLNGHHNYENILTSLAISDQMKFD---QKVSINVLKKFLGLPHRFQTVHINNNISW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N  S KAA+  L       +G    +LG     G+   S    L +      I
Sbjct: 318 INDSKSTNVDSTKAALKNLK-----IKGTIWLLLG-----GDGKSSNFNILKKYFEKIKI 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G   L L     +     Y++T+    + I   +  GDVV++
Sbjct: 368 -KIYCFGKDGLNLSKLCKKKS--IYTKTLKQAIILISKKIQPGDVVLL 412


>gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 490

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/465 (16%), Positives = 151/465 (32%), Gaps = 67/465 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + +  D+R +     F  IKG       ++ +    G   ++    +      + +
Sbjct: 25  DMTFDFLHYDTREVQKNTLFV-IKGAFK--RAYLDNV--HGITGLITEKKI-----DVDL 74

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P + V +V  AL+ L++A     + +  I A TG+ GKTT        L      +  + 
Sbjct: 75  PQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTAAYFAYTMLKEATNNHTALF 134

Query: 142 SYNNHIGVPLTLARMPVD-----------VDFGIFELGMSHL-------GEIRFLTHLVR 183
           S  + I  P    +   D               + + GM+HL         ++   + +R
Sbjct: 135 STVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTHLVMEVSSQAYLKNRVYGLR 194

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +     I+P H+        E+  + K  +   L+ +  + +N +   F+ +   +  
Sbjct: 195 YDVGAFLNISPDHIGPNEHPTFEDYLAHKLML---LDHSDEVIVNAETDHFDTIYTYAKK 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLM 298
              K +Y++ +           +    +S   V   +          +  G     N + 
Sbjct: 252 THHK-VYTYSRQ-----MFTSEESAIHESRFTVVKSEFNEMLGSYRLNVPGDFNESNAMA 305

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +VS         +K           G+     +N      +D  Y  N  SM+A +S
Sbjct: 306 AMMLVSFAGVKHQAMVKG---LDEVFIPGRMLSLPINGHGVAFVD--YAHNFVSMQALLS 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
                 P+  GR + V+G     G    S   D   V+S      V+L+           
Sbjct: 361 FAQAQYPN--GRVLVVVGSP---GNKGVSRRADFGHVVSDL-ADVVYLTADDPQFENPLD 414

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        + VHY            S+  + D+V+V  K 
Sbjct: 415 IAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGKG 459


>gi|157964491|ref|YP_001499315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           massiliae MTU5]
 gi|157844267|gb|ABV84768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           massiliae MTU5]
          Length = 498

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 128/407 (31%), Gaps = 81/407 (19%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++V    + +IP+    D+L A                IAITG+ GK+TT  +++  L+
Sbjct: 77  HEIVNIAKNFNIPITSDIDLLFA---------KSKNLKFIAITGTNGKSTTTALISHILN 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S    Y   G+        ++  +     D  + EL    L  ++  T      IAV+  
Sbjct: 128 SSGLDYPVAGNIG------VSALQAKASKDGYVLELSSFQLDLVKTFTA----KIAVLLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL     +    +AK++IF+ +++     +N D+ +   +  K        +  F 
Sbjct: 178 ITPDHLDRHQDMTCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFS 237

Query: 252 KSK--NADFQLRKWKQCS---EQSWMEVQLQGKSM------------------------- 281
            +K       +   K  +   +    E+Q   +S                          
Sbjct: 238 VTKILENGISVVDDKISANFFDDISFELQRNSESFRQDEFQGEPAERIKIREHRRDLQNS 297

Query: 282 ----------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                         +  G H  +N+  +  +  I+  +    ++++S F        R +
Sbjct: 298 LVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLP---HRMQ 354

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +    +  ++S   N  S   +I  L  I     G          E G         
Sbjct: 355 YIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGI-------PKEGG--------- 398

Query: 392 LAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             E +  Y   I   +  G       +     +     + ++  F  
Sbjct: 399 -IEEIKPYFSQIKKAYFYGQAKEIFANTAKNIVDFVICDNLEQAFDL 444


>gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 6 str. 870]
 gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 4 str. 292]
 gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 9 str. C68]
 gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
 gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine
           nucleotide-disulphide oxidoreductase, class
           I:Folylpolyglutamate s [Brucella melitensis biovar
           Abortus 2308]
 gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
          Length = 467

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           1330]
 gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis
           ATCC 25840]
 gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           canis ATCC 23365]
 gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis ATCC 23457]
 gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 3 str. Tulya]
 gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 5 str. 513]
 gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 3 str. 686]
 gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           neotomae 5K33]
 gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis
           1330]
 gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC
           25840]
 gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis
           ATCC 23365]
 gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis ATCC 23457]
 gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis M28]
 gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis M5-90]
          Length = 467

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
 gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
          Length = 473

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 118/359 (32%), Gaps = 39/359 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA II ITGS GKTTT   +   L +        G+    +      A+     ++ + E
Sbjct: 111 KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAGNIGTPVCEAAVDAK---SDEWMVVE 167

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T   RP +A +  +A  HL    G+E+  ++KA +F       T  +N
Sbjct: 168 LSSFQLKG----TKDFRPTVACLLNVAETHLDYHGGMEDYVASKARLFANQTAADTAVVN 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN--AD-FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +DD     L     A  +    +    +   AD   +       E+S +     G    +
Sbjct: 224 WDDPVCRELVPYIKAKLLPFSMTERLQEGVFADPPYIPDVTDDIERSIVYRDGNGVLHPI 283

Query: 284 V----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +        G    +N L    I     A+     + LS F   E    R    L     
Sbjct: 284 IGVAEIGLPGRFNVENALAACAIAIAAGAEPANLAEPLSTFRGVE---HRLEYVLEHAGV 340

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S   N  +   A+S   Q         I ++    + G         L E     
Sbjct: 341 AYYNNSKATNSKATMMALSSFKQ--------PIVLIAGGLDRGSDYTELVPSLQE----- 387

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVD-------GDVVVV 449
            +  V L G     L +   ++   HV   +  +     +  ++         GDVV++
Sbjct: 388 GVKAVVLLGETRHKLAERAQQAGIEHVKVVDNGEDAAATLVEAVNKAAEFAETGDVVLL 446


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 138/429 (32%), Gaps = 50/429 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I   V  G+G V+                    DV GA+         + +  IIAITG+
Sbjct: 429 ISQPVGPGSGAVIEVNAAPGIRMHHYPSAGKPRDVAGAIVDYLFPDG-QGRIPIIAITGT 487

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLARMPVDVDFGIFE 166
            GKTT   M+     +         +   +I            P +   +  D    +  
Sbjct: 488 NGKTTVTRMIGHIWRTAGYCVGMTTTDGIYIDGHCIQKGDTTGPASARAVLTDPTVEVAV 547

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIF 224
           L  +  G +R      +  + +IT I   HL       ++++A  K+ + E +   G   
Sbjct: 548 LETARGGIVRGGLAFDQCDVGIITNITEDHLGQDGIEDLDDLAYIKSLVVETVRPGGYAL 607

Query: 225 LNYDDSFFELLKAK---------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           LN DD +   L  +         + A  I      G    A F        +  S     
Sbjct: 608 LNADDPYVVRLAGRVRGEVVYFSTEADNIVVRRHLGIGGKAFFVKDSILYAACGSLASPI 667

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                + V   GI  H  QN L+       L   +    + L+ F    GR         
Sbjct: 668 CAVGDIPVTLGGIAVHNLQNALVAAAACYCLKVPMTHIRQGLATFDQNPGRLNLLTL--- 724

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G   +  + Y  NPA  +A I+ + ++          ++G +   G+      +++   
Sbjct: 725 -GDIRVCID-YGHNPAGYQALINTVRRLGATR------LVGVIAAPGDRRDDVIVNVGR- 775

Query: 396 LSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETM--------DGLFLFIQSS 440
           ++     ++++       G     +   L R +    + E          + +   +  +
Sbjct: 776 IAGRGFDYIYIKEDADRRGRAPGEVAQLLRRGVLEAQFPEDRIVTILAETEAVAKALADA 835

Query: 441 LVDGDVVVV 449
              GD+VVV
Sbjct: 836 -RPGDLVVV 843


>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9515]
 gi|158512733|sp|A2BY75|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 477

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 121/357 (33%), Gaps = 39/357 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPL 151
           L ++ +A         I ITG+ GKTT   +L+  L +   +      IG+    I   +
Sbjct: 107 LGEVNIAWESLKNINWIGITGTNGKTTVTHLLSHILRTNNLLAPFAGNIGTPLCKIAYSI 166

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  ++D+ + EL    + EI  L   ++P I + TT    HL     ++     K 
Sbjct: 167 K----SKNIDWLVAELSSYQI-EIATLC--IKPKIGIWTTFTADHLDRHKTLDNYFKIKN 219

Query: 212 EIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +   L+++     NYDD       K+ S  + I T        + D+ +       E+ 
Sbjct: 220 SL---LKQSEFRIYNYDDIHLRENFKSLSKGIWITTSSKQSDLDHCDYWINNEDFIVERQ 276

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L+   ++      G H  QN+L+ +     +    +    AL  +        R 
Sbjct: 277 ENLLSLKNFKLK------GNHNTQNLLLAIAAARKIGLSPEKIKNALLSYEQLP---HRM 327

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     +I++S   N  S  A I  +           I + G   + G   +  + 
Sbjct: 328 ETIYQSNKLEIINDSKATNFDSSTAGIKAIKGAP-------IIISGGKLKSGSYIEWVN- 379

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDG 444
                +       V+L G     LK  +        +     +  +  ++ S + + 
Sbjct: 380 -----IINKKAKAVFLFGESSQTLKKLILEGGFKKDIFIFNDLSEVINYVYSYIENN 431


>gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1057]
          Length = 481

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 170/484 (35%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGETFKK-EFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N    +F+++K +  +L       +G   N   +        +      +  GK +   
Sbjct: 241 VNSGMDYFQIVKEQVASLEHD---FYGAGSNNTIK--------DSQAFSFEAAGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++        G+        G  
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|321315285|ref|YP_004207572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
 gi|320021559|gb|ADV96545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
          Length = 451

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 123/378 (32%), Gaps = 45/378 (11%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           MV       IPV+   ++   L          + A  I ITGS GKTTT  ++   L + 
Sbjct: 89  MVQEAEKRGIPVWTEIELAYYL----------TSAKFIGITGSNGKTTTTTLIYEMLKAG 138

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +     G+      V   +A      ++ + EL    L      TH  RP I++I  + 
Sbjct: 139 SQKALIAGNIGT---VASEVAYHADGDEWIVTELSSFQLMG----THAFRPEISLILNVF 191

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL      E    AK +++     +    +N DD     L     A  +    S    
Sbjct: 192 DAHLDYHHTRENYEKAKQKVYLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLE 251

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + A  +        E            +E V    G H  +N+L  + +V    A  +  
Sbjct: 252 QGAYVKDSMIMFNGEAIL--------PLEEVV-LPGAHNLENILAAIAVVKTAGASNEAV 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L+ F   +    R +           ++S   N  +   A+S           + + 
Sbjct: 303 KKVLTSFTGVK---HRLQYVTTVNGRKFYNDSKATNILATSKALSAFD--------KPVI 351

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMD 431
           +L    + G         +       ++  V   G     L+         HV   + ++
Sbjct: 352 LLAGGLDRGNGFDDLKPYM------KHVKAVLTFGQTAPKLEKLGNELGIQHVKRVDNVE 405

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  +   +GDV+++
Sbjct: 406 QAVSAAFALSNEGDVILL 423


>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
 gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
          Length = 444

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQSLAYQV----AEYNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTP 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD   +    + H  GI    Y F + K    +        ++ +    +  
Sbjct: 208 DDAFIFWNDDPIIQR---ELHKYGIHGHYYPFAERKE---EGTAAYVEQDKVYFTEPIAF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      ++     +   +AL  F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVE---HRLEKVCRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + I +LG     G+   + + ++A+++  
Sbjct: 319 VDYINDSKATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++  G H   L     +  + V   ++M             G+ V++
Sbjct: 367 KCTGLIY-MGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 441

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 129/409 (31%), Gaps = 58/409 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++ S+    +PV       G L     A+R       IA+TG+ GKTTT   +   L
Sbjct: 76  DHPVLRSLKDRGVPVV------GELELSFDASRWNYW---IAVTGTNGKTTTTSFIGHLL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +        G+    +    +    P+     + E+    L       H  RP +AV  
Sbjct: 127 RTAGFNVVVGGNIGVPVT---SFLNEPISETIIVAEVSSFQL----ETVHTFRPQVAVFL 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + P HL     +E     KA IF+  +      LN +D +   L     +       +F
Sbjct: 180 NLTPDHLDRHGSMENYFQTKARIFKLQQPQDLGVLNAEDRWASSLIGSLKS----RTLAF 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  K        +      +   V              G H   N+   +     L   +
Sbjct: 236 GIEKGDVHWSEGFLNVLGTTVASVS--------DVKLRGRHNLANIAAGVAACYHL---L 284

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  S          R     + G  +  D+S   NP S   A+    +        
Sbjct: 285 PDGFDFGSAISQFCAPEHRIEFVRSVGGVSFYDDSKATNPDSTIVALEAFQE-------P 337

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRS--IHVHYS 427
            + +LG     G         LAE +   + +    + G    ++K++L  +   ++  +
Sbjct: 338 VVVILG-----GRNKGMDFAALAEFIKRKSTVKWAVVMGEAKESIKESLLANGFENISEA 392

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++++            GDVV++    +S             F  ++  L
Sbjct: 393 DSLEEAVHLAYEIAAPGDVVLLSPACASFDMFKNFEERGDRFKEIVRKL 441


>gi|167825933|ref|ZP_02457404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
 gi|167847419|ref|ZP_02472927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 165

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +      L  F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S   
Sbjct: 1   PLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP- 59

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
              R+ V+G+M E+G+   +FH ++        I  ++  G       DA       H+ 
Sbjct: 60  ---RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFD 115

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    +   + ++      ++VK S      R+++ L  E
Sbjct: 116 DAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 155


>gi|109896574|ref|YP_659829.1| UDP-N-acetylmuramate [Pseudoalteromonas atlantica T6c]
 gi|109698855|gb|ABG38775.1| UDP-N-acetylmuramate [Pseudoalteromonas atlantica T6c]
          Length = 448

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 151/421 (35%), Gaps = 50/421 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +   I   S P + +++VL                 ++A++G+
Sbjct: 67  IGNALSRGNLAVEYV--LNRGIPYTSGPQWLLENVLK-------------DRWVLAVSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  ML   L S        G     I     ++    +  F + E          
Sbjct: 112 HGKTSTSSMLAWILESAG---MSPGFLIGGIPQNFDISARLGETPFFVIEADEYDSAFFD 168

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V  RP   VI  I   H   F  I +I      +   +   G +     D+    
Sbjct: 169 KRSKFVHYRPRTLVINNIEFDHADIFDSIADIQKQFHHLIRMIPGNGLVIAPKTDNQITQ 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +  K     ++ +        +D++       ++    +V  +GKS   V    +G H  
Sbjct: 229 VLDKGCWSPVQFV-------GSDWKAEN--GSADGGEFDVIYKGKSFGRVKWSLLGLHNV 279

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN +M +          + AI+AL  F   +   +R          T+ D+ +  +P ++
Sbjct: 280 QNAMMAIIAARHAGVLPEVAIEALGSFVNAK---RRMEILGTVNGITVYDD-FAHHPTAI 335

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFH 410
              +  L   +  G+ R +AVL    E    +     H   LA+  S      V++    
Sbjct: 336 ATTLEGLR--AKVGDARILAVL----EPRSNTMKMGVHKQTLAK--SWSAADQVFIYEPS 387

Query: 411 VLALK-DALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            L+   DAL     V  S    ++ L   I S +  GD V++  SN  GF  +   LL++
Sbjct: 388 NLSWSMDALLAQSEVTASLHNDLNILEKSILSYVQPGDHVLIM-SNG-GFGGIHQRLLQK 445

Query: 468 F 468
            
Sbjct: 446 L 446


>gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
 gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
          Length = 467

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGVDDAYCQAIADRLHGAGIR-VMRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWSQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|283786910|ref|YP_003366775.1| murein peptide ligase [Citrobacter rodentium ICC168]
 gi|282950364|emb|CBG90012.1| murein peptide ligase [Citrobacter rodentium ICC168]
          Length = 457

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 131/398 (32%), Gaps = 37/398 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNACVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMAAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEACGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPENDINLKQTLAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLNADASAWEVWLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVQPADAAAALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + D
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVYLLQPPHIPWQVAEVAD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           A  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 402 ACVQ--PAHWSGDVDALAEMVVKTAQPGDHILVM-SNG 436


>gi|284800049|ref|ZP_05985544.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria subflava NJ9703]
 gi|284796233|gb|EFC51580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria subflava NJ9703]
          Length = 472

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 129/379 (34%), Gaps = 42/379 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG- 163
            +  ++ + G+ GKTTT  ML   L          IG    +  V   L + P       
Sbjct: 117 HQHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSK 176

Query: 164 ----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  A++  +   H   F+ +  I +    +   +
Sbjct: 177 SPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLAAIQTQFHHLVRTV 236

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G I  N      + L+          +  FG  +   +Q+   +        +V+  
Sbjct: 237 PSEGLIVCNG---QQQSLQDTLDKGCWTPVEKFGTEQG--WQVGTVRADG---SFDVRHH 288

Query: 278 GKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+++  V    +G H   N L  +        D+ TA +ALS F   +   +R       
Sbjct: 289 GETVGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTV 345

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
              T+ D+ +  +P +++  I  L Q    G  R + VL      M  +G +  +     
Sbjct: 346 NGITVYDD-FAHHPTAIETTIEGLRQ--RVGNARILTVLEPRSNTMK-LGTMKAALPE-- 399

Query: 393 AEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               SL +   V+    G      +   P    +H  +  D     I  +   GD ++V 
Sbjct: 400 ----SLNDADQVFCYAGGVDWDVAEALAPLGSKLHVGKDFDAFVAEIVKNAEAGDHILVM 455

Query: 451 SSNSCGF----YRLINLLL 465
            SN  GF     +L+  L 
Sbjct: 456 -SNG-GFGGIHGKLLEALK 472


>gi|223040209|ref|ZP_03610488.1| Mur ligase middle domain family [Campylobacter rectus RM3267]
 gi|222878570|gb|EEF13672.1| Mur ligase middle domain family [Campylobacter rectus RM3267]
          Length = 478

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 135/404 (33%), Gaps = 43/404 (10%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RS 106
           F++ A+   A   V           + +P+     +   L K    A             
Sbjct: 100 FVILALAVIASYAVYLATQYRVNLGVVLPLVASFALSFLLEKAKFKAYENSARKKLASMP 159

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGIF 165
           +  II IT S GKT+ K  L   L +         S N   G +      +       I 
Sbjct: 160 ELKIIMITASFGKTSIKNFLFELLKNDFACRKTPRSVNTLAGLIQDVNNELAAGTQIYIA 219

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +T  + P IA++  I   H+  F  +E I + K E             
Sbjct: 220 EAGARLKGDIAQITEFLSPQIAIVGEIGAQHIEYFKTLENIRATKLEALGSKRLEKAFV- 278

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                      +   A     I  + K+      L   +   +    ++       E   
Sbjct: 279 ----------HSSMQANEGTKIEIYDKN------LSGVEASLDGVKFKL----GEREFAS 318

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+ + +     L  D      AL+     E R +R     + G   +ID+ 
Sbjct: 319 PLLGKFNAANLAVCVKTALYLGLDEARIAAALARLKNVEHRLERI----DAGGKIIIDDG 374

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M A+     +++   EGR++ V   + E    S   +  L+++++      + 
Sbjct: 375 FNGNFNGMSAS----YELAAGYEGRKVLVTPGIMES---SDEENEKLSKIINKTFDIVML 427

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            S  + +AL   L R   V   +    +   +  +   GD+++ 
Sbjct: 428 TSSLNAVALLKHLSR-PKVIVIKDKSKMQEVLAQNTKAGDLILF 470


>gi|209696054|ref|YP_002263984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aliivibrio
           salmonicida LFI1238]
 gi|226711878|sp|B6ELH7|MURD_ALISL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|208010007|emb|CAQ80330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aliivibrio
           salmonicida LFI1238]
          Length = 442

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 127/345 (36%), Gaps = 42/345 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++     ++     A  G+          L  +  D D  + E
Sbjct: 107 TAPVIAITGSNGKSTVTDLTGEMANAAGVKTAVGGNIGF-----AALDLLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+E+   AK  +F+         +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRVFDH---ADVCIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD      K        KT+ SFG   + ++   +     E   + +      +     
Sbjct: 215 RDD------KETYPDTADKTLISFGFDTSDEYGCIE-----ENGRLFLAKNNTPIIAANE 263

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L ++     + +  +          G   R +          +++
Sbjct: 264 LGLVGKHNIANSLVALALLDAAGVNTNKTLDT---LKRYNGLTHRCQVVAEMNGVRWVND 320

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S LS      EG+   ++G + +  + S     +L+  L+  ++  +
Sbjct: 321 SKATNVASTLAALSGLS-----IEGKLHLLVGGVGKGADFS-----ELSPALNELDL-MM 369

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  G   +     +P        +TMD     +   L  GD+V++
Sbjct: 370 YCFGEDGV---QFMPLDPRSRLCQTMDEAIELLSPELTFGDMVML 411


>gi|157368712|ref|YP_001476701.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
 gi|157320476|gb|ABV39573.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
          Length = 459

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 132/375 (35%), Gaps = 44/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEACGYQPGFVIGGVPGNFDVSARLGGSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +DS  + + A       + +      +   ++ +  K   + S   V L G+ + EV  
Sbjct: 221 DNDSHLKQVMAMGCWSEQELV-----GEEGAWRAQ--KLTPDASHYAVFLNGEQVGEVKW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +    + A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAATRHVGVLPEDACRALGDFINAR---RRLELRGEANGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  MG         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-MGISKNDLAPSLGR------A 381

Query: 402 SHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L   H     V  + +A  +    H+S  +D L   I  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPHHIPWQVAEVAEACVQ--PAHWSADLDTLVDMIVKTAQPGDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEE 467
           F     RL+  L  +
Sbjct: 438 FGGIHDRLLEALANK 452


>gi|332557537|ref|ZP_08411859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
 gi|332275249|gb|EGJ20564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
          Length = 465

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 126/403 (31%), Gaps = 51/403 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARLRSKATIIAIT 114
             ++V +  +  +     PV          VD+ +G   +               ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARATAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +     G+    +           D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLD----LDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F          +  D+     
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGLY 237

Query: 235 LKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
           L  + S A     +      +    +   W   + + ++    +G+      +  +    
Sbjct: 238 LAGQLSVAPEDDRVIRISAGQK--LERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN          L         AL+ F    G   R +    +G    +++S   
Sbjct: 296 GAHNHQNACAAYAACRTLGLAPRQIEAALASF---AGLPHRSQTVGEKGGVRFVNDSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL 406
           N  S   A+    +I     G           +G+     +    L  V+        +L
Sbjct: 353 NVDSAAKALQAFPKIRWIAGG-----------LGKDGGIVALQPHLGSVVKA------YL 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +  + H    ETM+            G+VV++
Sbjct: 396 IGHSARDFALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|225023408|ref|ZP_03712600.1| hypothetical protein EIKCOROL_00266 [Eikenella corrodens ATCC
           23834]
 gi|224943886|gb|EEG25095.1| hypothetical protein EIKCOROL_00266 [Eikenella corrodens ATCC
           23834]
          Length = 459

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 119/359 (33%), Gaps = 35/359 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVD-----FG 163
           ++ + G+ GKTTT  ML   L          IG    + G+   L + P         F 
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGIPQNFGISARLPQAPKADPASRSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  A++  +   H   F  +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPNLAAIQTQFHHLVRTIPGQG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N  +   + + A+        + +FG ++      +  +     ++  +       
Sbjct: 227 LIVCNGREESLQTVLAQG---CWTPVENFGGAEG----WQAGEPDGNGAFDVLHHGQTVG 279

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G H   N L  +         +  A +ALS F   +   +R          T+
Sbjct: 280 RIGWQLLGEHNRLNALAVIAAARHAGVSIQVACEALSQFQNVK---RRMEVKGCVRGITV 336

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P ++   ++ L Q    G  R IAVL      M  +G +  +    LAE   
Sbjct: 337 YDD-FAHHPTAIATTVAGLRQ--KVGGARIIAVLEPRSNTMK-LGSMKAALPESLAE--- 389

Query: 398 LYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                 V+    G          P    +H     D     I S+   GD ++V  SN 
Sbjct: 390 ---ADQVFCYGGGVEWDVAAALAPLGSKLHTGNDFDAFVQSILSNAKSGDHILVM-SNG 444


>gi|301058489|ref|ZP_07199502.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
 gi|300447411|gb|EFK11163.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
          Length = 399

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 126/378 (33%), Gaps = 30/378 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   I ++G+ GKTTT  ++   L          IG    +      L      V  G 
Sbjct: 37  QEKKAIVVSGTHGKTTTASLVAWILEQAGMDPGFMIGGIPRNFESNFKLGEGAYFVIEGD 96

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                      +FL +   P + ++T+I   H   +  ++ +  +  ++   +   G + 
Sbjct: 97  EYDSAFFDKGPKFLHY--NPSLVILTSIEFDHADIYRNLDHVVDSFRKLIHLIPGDGYLI 154

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-- 282
            N DD     +  +     +  + ++G  K  D++L       + +   V   G+  +  
Sbjct: 155 ANGDD----KIICRETKGALCKLETYGFDKANDWRLGDVGDSEDLTAFSVIRNGQEEDNK 210

Query: 283 -VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +   L         AL  F   +   +R      +   T+
Sbjct: 211 TFKTPLFGRHNVSNCLSAVALAHALGVSKGALSMALESFKGVK---RRQEIIGKKRGITV 267

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           +D+ +  +P +++     +  +      RR+ V+ +          F    AE     + 
Sbjct: 268 MDD-FAHHPTAVR---ETVRAVKGKYPHRRLVVVFEPRSNSSRRNIFQAQYAESFDAGDL 323

Query: 401 --------ISHVWL-SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                   +  + +   F    L   L    +  +     D L   + SS+   DVV++ 
Sbjct: 324 MMIREPAMVEKIPIHERFSARKLVSQLSEMGLEAYSFGETDELLEELLSSVKKDDVVLIM 383

Query: 451 SSNSCGFYRLINLLLEEF 468
            SN  GF  L    LE  
Sbjct: 384 -SNG-GFDNLHQRFLEAL 399


>gi|297545642|ref|YP_003677944.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843417|gb|ADH61933.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 876

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 157/473 (33%), Gaps = 68/473 (14%)

Query: 29  GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAV-----------QKGAGLVVVNTD--M 74
           GI+ID +  I P     A++     G D     +           + GA + +  +    
Sbjct: 389 GIAIDKTDEIHPNNIEIAVRAAKAIGLDIAGIDITMEDIKKPLTEKNGAIIEINASPGIR 448

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +    S   P     +V  A+  +      ++   II+ITG+ GKTT   M    L +  
Sbjct: 449 MHHYPSKGKP----RNVAKAIVDMLFPKGSKATIPIISITGTNGKTTVTRMTAHILKTYG 504

Query: 135 KTYACIGSYNNHIG----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            T     +   +I            P +      D +     L  +  G IR        
Sbjct: 505 YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNIDAAVLETARGGIIREGLGYDLA 564

Query: 185 HIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + VIT I+  HL       +E++A  K+ + E +++ G   LN DD     L  ++   
Sbjct: 565 DVGVITNISEDHLGIDGIKTLEDLAFVKSLVVEAVKEDGYSVLNADDPMTPYLAQRAKG- 623

Query: 243 GIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  F    N                ++          +   ++ + +     G   
Sbjct: 624 ---KVIYFSMYDNNLTVKKHVEKGGIAVYVKDGVIVIANGQIIPVVKIEEIPAALSGKVL 680

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +  +N L  +     +   ++   K +  F+             N G F ++ + Y  N 
Sbjct: 681 YNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFNLFNVGNFRVLVD-YGHNI 739

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
           A +K+ I    ++  +   R I V+G   +    S    + + E+        +++    
Sbjct: 740 AGIKSVIEAAQKLDAN---RLIGVIGVPGDRINSSI---LKVGEICGE-GFDFIYIKEDV 792

Query: 407 ------SGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQS---SLVDGDVVVV 449
                  G     L++ A+   +     +T+      +++       GD++VV
Sbjct: 793 DLRGRKPGEVARILEEGAIKGGMDRKKIKTILKETEALKAAMYHAEAGDLIVV 845


>gi|167920622|ref|ZP_02507713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei BCC215]
          Length = 166

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPH 366
             +      L  F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S  
Sbjct: 1   MPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP 60

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
               R+ V+G+M E+G+   +FH ++        I  ++  G       DA       H+
Sbjct: 61  ----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HF 115

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    +   + ++      ++VK S      R+++ L  E
Sbjct: 116 DDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 156


>gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
 gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
          Length = 811

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 152/436 (34%), Gaps = 57/436 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGAL---NKLAVAARLR 105
           I   + KGA  +  + +         I         V   + +   L   ++  + A L 
Sbjct: 42  IDKLIAKGAAYLPGHKESYVPEEGTIIYGSGIAKDNVEYKEALRKQLPLVHRAELLALLM 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            + T I ++GS GKTT   ++T    + KK     IG  N+       L       ++ I
Sbjct: 102 QEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYAIGGLNSQ-----YLNGYSGSSEYFI 156

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E   S      +      P +AV+T +   HLSNF    E++A    E    ++     
Sbjct: 157 AEADESDGSLKHYF-----PKVAVVTNLDNEHLSNFEGSKEKLAQTIEEFTRKVDDPNLC 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
           F N D    + LK +          S+G S+     +   +Q   +S   +   GK   +
Sbjct: 212 FYNGD---CQELKGRISG------ISYGFSQECALYIYSHRQEGWRSVFSLSFLGKDYLD 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + IG H   N    +G+      D ++  +AL  F   + R +R     N     L 
Sbjct: 263 IDLNLIGKHNVANAAAAIGVALTFGIDEESIREALKSFSGVQRRMER----KNTSEKFLF 318

Query: 343 DESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            E Y  +P+ +   +  L              PH   R +  L +     + +       
Sbjct: 319 LEDYAHHPSEISCTLRALRDAVGLRRIIAICQPHRFSRLLYCLEEFFNAFQDADE----- 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVK 450
             +  +Y+   + L       L + +  S HV   Y    D +   ++ ++   DV +  
Sbjct: 374 VILTDVYSAGEMPLDLPSPEKLAETISLSSHVCCTYVP-YDNVIEHLKQNIRVHDVCISL 432

Query: 451 SSNSCGFYRLINLLLE 466
            + +     + N L +
Sbjct: 433 GAGNIH--TVGNALKD 446


>gi|282878010|ref|ZP_06286818.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
 gi|281299845|gb|EFA92206.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
          Length = 457

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 145/424 (34%), Gaps = 49/424 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I HA +     +VV T          +  F  ++      +  V   L      +   G+
Sbjct: 63  IPHACKNPQTCLVVYTP-AIPETHQELKYFR-ENGFEIQKRAQVLGTLTQTHKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M    +        A +G  + + G    L+      D+ + E       E 
Sbjct: 121 HGKTTTSTMCAHIMHQSHVDCNAFLGGISKNYGTNYILS---DASDYIVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +       ++  G + ++ D      L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTTLIQPGGALIIHRD------L 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
           + K       ++Y + + K  DF     +  +     +     +++E V  G       +
Sbjct: 227 EMKPAVQEGVSMYDYSRDKG-DFHAENIEIKNGHITFDFISPLENVEGVELGQPIPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +     +     +S +H  E   +R+   +      L+ + Y  +P  + 
Sbjct: 286 NGVAAMAMAQLNGCTAEELRYGMSTYHGVE---RRFDFKIKNDRHVLLSD-YAHHPKEIY 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVW 405
            +   L ++  + + +  A+      +   ++ F+ + A+ LS          Y      
Sbjct: 342 QSAKSLREL--YHDRKVTAIF--QPHLYTRTRDFYKEFAKALSQLDEVILCDIYPAREQP 397

Query: 406 LSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-----GFY 458
           + G     + D L       +H     + +   ++    D DV+V+  +           
Sbjct: 398 IKGVTSQLIYDELTCKEKSMIH----KEEVLDLVKR--RDFDVLVILGAGDLDNYVPQMA 451

Query: 459 RLIN 462
           ++I 
Sbjct: 452 KIIE 455


>gi|296331096|ref|ZP_06873570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674251|ref|YP_003865923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151740|gb|EFG92615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412495|gb|ADM37614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 451

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 118/346 (34%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + 
Sbjct: 111 TNAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RP I++I  +  AHL      E    AK +++     +    +
Sbjct: 168 ELSSFQLMG----THAFRPEISLILNLFDAHLDYHHTRENYEKAKQKVYLHQAASDKAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L     A  I    S    + A  +        E            +E V 
Sbjct: 224 NQDDETVVRLAEAGKAENIPFSVSKTLEQGAYVKDGMIMFNGEAII--------PLEEVV 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + +V    A  +   K L+ F   + R +      ++ F+   ++S
Sbjct: 276 -LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTTVKDRKFY---NDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S           + + +L    + G         +       ++  V 
Sbjct: 332 KATNILATSKALSAFD--------KPVILLAGGLDRGNGFDDLKPYM------KHVKAVL 377

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L+         HV   + ++       +   +GDV+++
Sbjct: 378 TFGQTAPKLEKLGNEMGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|237724907|ref|ZP_04555388.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D4]
 gi|212664599|gb|EEB25171.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
           5_1_36/D4]
          Length = 444

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQSLAYQV----AEYNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTP 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD   +    + H  GI    Y F + K    +        ++ +    +  
Sbjct: 208 DDAFIFWNDDPVIQR---ELHKYGIHGHYYPFAERKE---EGTAAYVEQDKVYFTEPIAF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      ++     +   +AL  F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVE---HRLEKVCRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + I +LG     G+   + + ++A+++  
Sbjct: 319 VDYINDSKATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++  G H   L     +  + V   ++M             G+ V++
Sbjct: 367 KCTGLIY-MGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|188585928|ref|YP_001917473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226722938|sp|B2A2H0|MURD_NATTJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|179350615|gb|ACB84885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 461

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 125/368 (33%), Gaps = 38/368 (10%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L    ++      + +  +IA+TG+ GKTTT  ++     +   +    G+    +
Sbjct: 96  VIDELELGYQILNYRLTKPEERLIAVTGTNGKTTTTNLIGEFFEASGYSIYVAGNVGLPL 155

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                +A    D DF + E+    L  I+      RP +++I  I P HL     ++   
Sbjct: 156 SQ---IACEVTDTDFIVLEVSSFQLEFIK----GFRPKVSMILNITPDHLDWHGDLDSYI 208

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK  IF+         +N DD     L  +S    +     F K+      LR      
Sbjct: 209 RAKMNIFKNQTSKDFSVVNVDDETTFGLNRESKGRKLN----FSKNS-----LRTEGSFI 259

Query: 268 EQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           E   + +        ++H       G H  +N+L         +   +     L  F   
Sbjct: 260 EDDHLVINYLDTKTSIIHKHDILLPGEHNLENVLAATTATLPFSISEENIRNTLKAFSGV 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R            I++S   N  +   AI+    +        I + G     G+
Sbjct: 320 D---HRLELVRELNGVKFINDSKGTNVEASLKAINSFDSM--------ILIAG-----GK 363

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSL 441
              +   + AE +    +  V+L G     +  AL +  +  Y     ++          
Sbjct: 364 DKGADFSEFAEAIKEKGVKKVYLFGETYKKIASALDKVYYPEYYIVNNLETAVTGAYQDA 423

Query: 442 VDGDVVVV 449
           + GDVV++
Sbjct: 424 ISGDVVLL 431


>gi|146281466|ref|YP_001171619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri A1501]
 gi|145569671|gb|ABP78777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           stutzeri A1501]
          Length = 447

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 124/346 (35%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++    ++  +T A  G+        L       DVD  
Sbjct: 104 REAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNLGTPALDLL-----ADDVDLY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   +
Sbjct: 159 VLELSSFQL----ETTEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQ---V 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD     L  +         ++FG  K  DF+     +   + ++  Q +      
Sbjct: 212 VVNRDDRLSRPLVGE-----DVPTWTFGLGK-PDFKGFGLFEEKGEKYLAFQFEALMPVR 265

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +       +  L  F    G   R +    +   +  D
Sbjct: 266 ELKMRGAHNQSNALAALALGHAVGLPFGPMLDTLRRFT---GLPHRCQWVGERAGVSYYD 322

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   +  + S +    +A          
Sbjct: 323 DSKATN---VGAALAAIEGLGADIDGKLVLIAGGDGKGADFS-ALRAPVARYCRA----- 373

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     L +AL  +  +    +++            GD V++
Sbjct: 374 VVLLGRDAPRLDEALGEAAVLIRVASLEEAVQRAAECAEPGDAVLL 419


>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
 gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
          Length = 450

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 115/343 (33%), Gaps = 34/343 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + + +         ++A+TG+ GK+TT  +++  LS     Y   G+          + +
Sbjct: 92  SDIDLFFEKSKGLNLLAVTGTNGKSTTTALISHILSDNGLDYPIAGNIGVP------VLQ 145

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + EL    L     L       IAV+  I P HL     +E   +AK++IF+
Sbjct: 146 AKASKGGYVLELSSFQLD----LVKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFD 201

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++K     +N D+ +   +           +  F  +K  +  +         ++ E  
Sbjct: 202 RMDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKILEKGISIVNDIITDNFFE-H 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +  K +       G H ++N+  +  +  I+  +    I+++S F    G   R +   N
Sbjct: 261 ISFKLISNK-SLQGIHNSENIAASYAVARIIGLEPVKIIESISSFQ---GLPHRMQYLGN 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  +   +I  L  I     G  IA      E G           E 
Sbjct: 317 IDDINFYNDSKATNAIAAVQSIKALDNIYWLAGG--IA-----KEGG----------IEE 359

Query: 396 LSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           +  Y   I   +  G       +     I     + +   F  
Sbjct: 360 IKPYFSKIKKAYFYGQAKEMFANTAKDIIDFVICDDLKQAFEL 402


>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
 gi|198272800|gb|EDY97069.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 122/351 (34%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 95  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQSLAYQV----AECNY 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYGFEMQNYVDAKFRIIQNQTD 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD    +++ + H  GI   Y F  ++  +  +  + +   + +    +   
Sbjct: 207 DDAFIFWNDDP---IIQKELHKYGIHGQY-FPFAEKNEEGVAAFTE-ENKVYFTRPIAFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N +      +I     +   +AL+ F   E    R          
Sbjct: 262 MEQEELALTGTHNLFNSMAAGISANIAGIRKECIREALNDFKGVE---HRLEKVARVKGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  +         + I +LG     G+   + + ++A+++   
Sbjct: 319 DYINDSKATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKEK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++L G H   L D      + +   ++M        +    G+ V++
Sbjct: 367 CSGLIFL-GLHNEKLHDFFDNFGLPIVDVQSMPDAVNAAYNMAKKGETVLL 416


>gi|313680165|ref|YP_004057904.1| UDP-N-acetylmuramate--l-alanine ligase [Oceanithermus profundus DSM
           14977]
 gi|313152880|gb|ADR36731.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanithermus profundus DSM
           14977]
          Length = 450

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 146/416 (35%), Gaps = 51/416 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +     +     +PV         + ++ V A +  +   I ++G+ GKTTT  M
Sbjct: 68  NAVPEDHPERRAAARAGVPV---------MARMQVLAGILERGRSIGVSGTHGKTTTTSM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    + +      +        V  T+  +  +  +G     ++ + E   L   V   
Sbjct: 119 IAHVFTELGADPVVL--------VGATVPSLGGNARWGAGRHRIAEVDESDPLFAEVAVD 170

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEI----FEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +AV+T +   H++  +  +   +  A +         + G +  N D +  E L      
Sbjct: 171 LAVLTNLEDDHVAAGAARQTYHADYASLRAAARAYAARAGRVLYNADWAELEALTEGLER 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTL 300
           +G      +G  +   ++    +  +  S   +   G    EV     G H  +N +  L
Sbjct: 231 VG------YGF-ERGRYRAEDVRLEAGGSRFVLTHDGAALAEVALAVPGRHNVENAVAAL 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   D   A  AL+ +   +G  +R++   +     ++D+ Y  +P  ++A     
Sbjct: 284 ATAHLEGLDPALAACALAGY---KGAARRFQTTGHLRGAWVVDD-YAHHPTEVRA----- 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHV 411
           +  +    GRR+ V+         +Q      AE         VL +Y  S   + G   
Sbjct: 335 TLAAARATGRRVRVVFQPHR-YLRTQQMWARFAEALRDADEVWVLDVYAASEEPIPGVSG 393

Query: 412 LALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + D L    H        + +   +  S   GD+++   +     ++L   L+E
Sbjct: 394 ALIADRLRELGHERARFAAWEEVRGALAESAKAGDLILTMGAGDV--WKLGRELVE 447


>gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
 gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
          Length = 438

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDTDRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E      T
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN---AKT 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG        +  +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADDRCISFGVD------VGDYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + +      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QLDGTLYLLLGGDGKSADFTP-----LKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P       +ETM+     I S +  GD+V++
Sbjct: 365 I-RLYCFGRDGAELAELRPD--VAVQTETMEQAMRQIASLVKAGDMVLL 410


>gi|28209980|ref|NP_780924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           tetani E88]
 gi|28202415|gb|AAO34861.1| UDP-N-acetylmuramoylalanine-d-glutamate ligase [Clostridium tetani
           E88]
          Length = 464

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 125/356 (35%), Gaps = 57/356 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L +   T    G+  N +   +   +    V   + E
Sbjct: 122 PAKLFCITGSDGKTTTTTLIYNILKTEGYTVWVGGNIGNPLFTKIEEIKKDDKV---VLE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I+         +A++T ++P HL     +EE   AK  IF+   +   + +N
Sbjct: 179 LSSFQLMSIKE-----PIEVALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQRENDLLVIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            D+   + ++ +     +K    F   +             E S+    ++ +  K +  
Sbjct: 234 EDNKITKSMEEECRGRLLK----FSMKEK----------LKEGSFYYNEDLYINEKKVCN 279

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V      G H  +N+L     VS    +  +      V     G   R            
Sbjct: 280 VSEVKLKGMHNVENLLAAFSCVS----EDSSIDSMREVAKNFNGVEHRLEFVKEIQEVKY 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P    AA+          +   I + G      +   SF     EVL+   I
Sbjct: 336 FNDSIASSPTRTLAALQSF-------DRPVILIAGG----YDKKISF-----EVLAKEGI 379

Query: 402 S---HVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVV 447
           S   H+ L G     +++A  + +        +    +++      + +   GDVV
Sbjct: 380 SHIKHLILLGDTKYKIEEAFKKVMRDSSEDLPISICNSIEEAINIAKENGESGDVV 435


>gi|60390567|sp|Q899G5|MURD_CLOTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 125/356 (35%), Gaps = 57/356 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L +   T    G+  N +   +   +    V   + E
Sbjct: 116 PAKLFCITGSDGKTTTTTLIYNILKTEGYTVWVGGNIGNPLFTKIEEIKKDDKV---VLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I+         +A++T ++P HL     +EE   AK  IF+   +   + +N
Sbjct: 173 LSSFQLMSIKE-----PIEVALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQRENDLLVIN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEV 283
            D+   + ++ +     +K    F   +             E S+    ++ +  K +  
Sbjct: 228 EDNKITKSMEEECRGRLLK----FSMKEK----------LKEGSFYYNEDLYINEKKVCN 273

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V      G H  +N+L     VS    +  +      V     G   R            
Sbjct: 274 VSEVKLKGMHNVENLLAAFSCVS----EDSSIDSMREVAKNFNGVEHRLEFVKEIQEVKY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P    AA+          +   I + G      +   SF     EVL+   I
Sbjct: 330 FNDSIASSPTRTLAALQSF-------DRPVILIAGG----YDKKISF-----EVLAKEGI 373

Query: 402 S---HVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVV 447
           S   H+ L G     +++A  + +        +    +++      + +   GDVV
Sbjct: 374 SHIKHLILLGDTKYKIEEAFKKVMRDSSEDLPISICNSIEEAINIAKENGESGDVV 429


>gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
 gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
          Length = 467

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGVDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +         +
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
 gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
          Length = 436

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 120/349 (34%), Gaps = 48/349 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIA+TG+ GKTT   ++   L +        G+  N +      A      D  + E
Sbjct: 102 KGKIIAVTGTNGKTTCTALIAHLLRNAGLNAVSAGNIGNPLA-----AHADRSYDAIVME 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +RP +AV+T +AP HL      E   + K +IF   ++      +
Sbjct: 157 LSSFQL----HWNTQLRPDVAVLTNLAPDHLDWHGSYENYKNDKCKIFLPRQEECYAVTH 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----ME 282
             D+F             + + + G+           +   +   + +   G+      +
Sbjct: 213 DVDAF--------RVPAGRAVCALGRG--------NLRIDMDGRDVFLVGHGRRRLLFHK 256

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N  M+   V++   DVD      +     E    R      Q     I
Sbjct: 257 SSLKLLGSHNLENAAMSCAAVALAFRDVD----PSAGLAGFEALHHRCEPVGEQNGVLFI 312

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N A++ AA+  ++       GR++ +LG   + GE        + E        
Sbjct: 313 DDSKGTNVAAVIAALHSIN-------GRKLIILGGQGK-GESYDELARVVCEETFAA--- 361

Query: 403 HVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
              + G     +  AL  + + H    + M             GD V++
Sbjct: 362 --IVIGSEAEKILAALRVAGYGHAVRAKDMAEAVKKASELAAPGDKVLL 408


>gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 438

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 125/398 (31%), Gaps = 45/398 (11%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPV------FGVDDVLGALNKLAVAARLRSKATIIA 112
              +KG   ++   D    + +  I        + V   +  + ++ +  R  S     A
Sbjct: 48  QVYEKGHPDILKREDYAFIVKNPGIKYTVPFVNYFVQHQVKIVTEVEIGYRYASHFHYGA 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GKTT   ML   L          G+    +           +  +   EL    L
Sbjct: 108 ITGTNGKTTITTMLYEMLQRKGN-AIVAGNIGFPLSALAYDFE--EEEKYVALELSNFQL 164

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             I        P ++V+  +AP HL     +E    +K  I+E  +K      N DD   
Sbjct: 165 LGIETFA----PEVSVVCNLAPDHLDYMPSVEAYYESKMRIYENCQKEDWFLRNVDDP-- 218

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYH 291
             + A +  +   TI      ++ D   +  K    +    E        E     +G +
Sbjct: 219 -TVVAYAKNIPCTTIDFSLTRQDVDLYRKDGKVWLHDLMLFE--------ESRFPIVGDY 269

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N ++   +   L   +      +S F P E    R      +      ++S   N  
Sbjct: 270 NLSNAMVAACMAYKLGVSLADIQATISSFQPVE---HRLEYIGEKDGVKFYNDSKATNTH 326

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++ AA+S           + I +L    + G             L  Y+   V       
Sbjct: 327 AVTAALSSFD--------KNILLLAGGHDKGISFLD--------LKQYD-DRVKCCIAFG 369

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +   P   HV   ETM        +    GD++++
Sbjct: 370 ETREQFKPIFTHVETVETMQEALHTAIAKAQSGDIILL 407


>gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
          Length = 404

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 104/301 (34%), Gaps = 29/301 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 56  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 115

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 233

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKS 239
            R  +   T ++  HL     + +   AKA +F+        T  +  DD          
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDD----DAGRAM 289

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A     I      + A ++             +  +   G    +     G +   N L
Sbjct: 290 AARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 298 M 298
            
Sbjct: 350 G 350


>gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus johnsonii NCC 533]
 gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 523

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 144/474 (30%), Gaps = 71/474 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++  A   GA   V         G        V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPEGKGMH---ALVV 90

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN 145
            DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I     A   S ++
Sbjct: 91  RDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDD 150

Query: 146 ------------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                        +  P +L      R  VD       + +S     +     +   +  
Sbjct: 151 IVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGF 210

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIK 245
              I P H+         +    K ++     K     +N   D F E+  A +      
Sbjct: 211 FLNITPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAMSDHFDEIYAAATTTTNPD 267

Query: 246 TIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGY 290
           +IY F ++        +  DF+ +  +   +++  ++              +     IG 
Sbjct: 268 SIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIGD 327

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    +    +   + +   K           G+            ++D  Y  N 
Sbjct: 328 FNEMNGTAAIIGAGLAGENYEECAKG---IRHVTIPGRMEALPSKNHGTVIVD--YAHNK 382

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
           ASM A +S +         + I V+G     G+   S     +E L+ Y     +L    
Sbjct: 383 ASMMALMSFMQ--REFNNPKIIVVVGAP---GDKGVSRRPGFSESLTAY-ADKAFLTTDD 436

Query: 407 SG-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
            G    + +   +   I     +       +       +     D+V++  K +
Sbjct: 437 PGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGA 490


>gi|325269658|ref|ZP_08136271.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
 gi|324988026|gb|EGC19996.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 140/408 (34%), Gaps = 39/408 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    +K A  +VV T  + +  +    V+  ++      +  V   L      +   G+
Sbjct: 63  IPEECRKPASTLVVFTPAIPASHAEL--VYFRENGFDIQKRAQVLGTLTRTHKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M    +        A +G  + + G    L+      DF + E       E 
Sbjct: 121 HGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILS---AHSDFVVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +     E ++K G + +       + L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALII------HKGL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
           + K H      +Y + +    DF     +        +     +++  V  G       +
Sbjct: 227 EMKQHVQEGVKVYEYSRD-GGDFHAGNVRIADGTITFDFLSPIENVRDVELGQPIPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +     +     +  +   +   +R+   +       + + Y  +P  + 
Sbjct: 286 NGIAAMAMAQLNGCTAEELRNGMKTYGGVD---RRFDFKIKDSRHVFLSD-YAHHPKEI- 340

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVW 405
             +     +      R++ V+     +   ++ F+ D AE LS         +Y      
Sbjct: 341 --LQSAKSLKELYADRKVTVIFQ-PHLYSRTRDFYKDFAEALSHFDEVILTEIYPAREQP 397

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + G     + D L   I        + +  F++S   D DV+VV  + 
Sbjct: 398 IPGVTSRLIYDNLRPDIEKQMIR-KEDVLDFVRS--RDFDVLVVLGAG 442


>gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 483

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 159/478 (33%), Gaps = 67/478 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +      +   + +S DSR       FFA KG ++   +++       A
Sbjct: 16  NFREISSA-GEYYFNWPKEVNFDQLSYDSRKSTENTLFFA-KGLNFKK-EYLTDLE---A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+  +A       ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAASFYDFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGV------------PLTLARMPV-----DVDFGIF 165
                 L  +     A + +    +               L L  M        +   + 
Sbjct: 125 YFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKALTNGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           E+            + +   + V   I+P H+       +E+    K ++   L+ +   
Sbjct: 185 EVSSQAYK--TERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQL---LKNSRYF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K +     I   +    S+N   + +     ++ S         S   
Sbjct: 240 VANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSV--------SGAF 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G    +N L T      L A ++     L++       G+        G    ID
Sbjct: 292 DIRLLGRFNQENALATALATKALGASLENIHDGLALAV---VPGRMELLTAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-IS 402
             Y  N  S++  + V+ +   H  G+ + VLG     G   +S   D  +V+  +  + 
Sbjct: 349 --YAHNGLSLENLVEVVEE---HHAGQLVLVLGS---TGNKGESRRKDFGQVIEKHPRLD 400

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMD-------GLFLFIQSSLVDGDVVVV--KS 451
            +  +          +   I    S T+D        +   +  +    D V++  K 
Sbjct: 401 VILTTDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKG 458


>gi|238760095|ref|ZP_04621245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
 gi|238701714|gb|EEP94281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 129/350 (36%), Gaps = 38/350 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +        G+        L    +    +  
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALSLLKQLTLQKHENQL 160

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
            + EL    L      T  +    A +  +   H   +  G+++  +AK  ++E      
Sbjct: 161 VVLELSSFQL----ETTSSLLAKAATLLNVTEDHTDRYPFGLQQYRAAKLRVYEN---AK 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    ++            SFG        +  +    +Q  + ++++G+ +
Sbjct: 214 VCVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKV 262

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++KAL+ F    G   R++        
Sbjct: 263 LNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFT---GLSHRFQLVFEHNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +I  ++  G     L +  P    +  +ETM+   + +  SL  GD+V++
Sbjct: 370 HI-KIYCFGRDGEQLAELRPEVSQL--TETMEQAMILLSKSLAPGDMVLL 416


>gi|25011704|ref|NP_736099.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           NEM316]
 gi|77414228|ref|ZP_00790390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
 gi|44888215|sp|Q8E3U2|MURC_STRA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24413244|emb|CAD47323.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159717|gb|EAO70866.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
          Length = 443

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 128/374 (34%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L   L +I  T   IG             R  
Sbjct: 93  HEFLGDFMRQFTSLGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + ++ +FE       E         P  ++IT I   H   F+G+E++ +A  +  + +
Sbjct: 144 ANANYFVFEA-----DEYERHFMPYHPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +DS    + +K+       IY +G   + DF  +   +    S  +V   
Sbjct: 199 QKG--LFIYGEDSKLHEITSKA------PIYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + +   H    G H   N    +  + I+  D+    + L  F   +      R     
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVK-----RRFTEKI 305

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L D       + 
Sbjct: 306 IDDTVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAHALSQAD 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y  +    +G   V  L   + +   +   E +  L         D  
Sbjct: 366 SVY-----LAQIYGSAREVDNGEVKVEDLAAKIVKHSDLVTVENVSPLLNH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
 gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
          Length = 481

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 94/501 (18%), Positives = 177/501 (35%), Gaps = 82/501 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++ L          K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLVMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N    +F+++K +  +L       +G   N   +        +      +  GK +   
Sbjct: 241 VNSGMDYFQIVKEQVASLEHD---FYGAGSNNTIK--------DSQAFSFEAAGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++          R      +   
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAATRVPG----RMEVLTQKNGA 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 342 KIFVD-YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGRLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSSNSCGFYRLINLLLEEFP 469
            K +++   Y+++      +P
Sbjct: 454 GKGADA---YQIVEGEKVAYP 471


>gi|88858800|ref|ZP_01133441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
 gi|88819026|gb|EAR28840.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
          Length = 442

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 115/343 (33%), Gaps = 39/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +    L+         G+       PL L    +DV   + E
Sbjct: 110 DKPVVAVTGSNGKSTVVTLAARVLADAGYNVGLAGNIGIS---PLDLFASEIDV--FVLE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  + P  A I  +   H+  ++G++E  +AK  I+   +       N
Sbjct: 165 LSSFQL----ETTTSLAPISATILNLCEDHMDRYAGMDEYYAAKQTIYRNAQ---WAVYN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D         ++    K   SFG+S  +D+ L   +     S+   Q Q         
Sbjct: 218 QADLL-------TYPHEAKATLSFGES-GSDYHLEHDES---GSFFAYQQQTILPVSDLT 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + ++     D   +    + F    G   R +           ++S 
Sbjct: 267 IVGKHNQLNALAVMALLKPFNID---SFVYSTSFKAFTGLAHRCQFVAQIDGVNFYNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  ++I  L         R I ++G   +  + S        +      ++ +  
Sbjct: 324 ATNVGACISSIEGLYS----PNKRLILIVGGDGKGADFSP------LQYYFAAQVTELIC 373

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G    AL      S   H+  +M       +     GD V++
Sbjct: 374 LGRDGKALAALKAGS---HFVSSMAQAVACAKKLAASGDNVLL 413


>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens SBW25]
 gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens SBW25]
          Length = 448

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 135/346 (39%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AI+GS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 RHAKAPIVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALDLLSDDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      TH +   +A +  ++  H+  +SG+     AK  IF G ++   +
Sbjct: 160 VMELSSFQL----ETTHDLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L  +         ++FG SK  DF+    ++   + ++  + Q      
Sbjct: 213 VVNRQDALSRPLMGE-----GLPCWTFGLSK-PDFKAFGIREEHGEKYLAFEFQNLMPVR 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + +L  F   E R +  R   +    +  +
Sbjct: 267 ELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRTFGGLEHRCQWVR---DLDGVSYYN 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    EG+ + + G     G+   +   DL   ++  +   
Sbjct: 324 DSKATN---VGAALAAIEGLGADIEGKLVLIAG-----GDGKGADFKDLKGPVAT-HCRA 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++    + ++D      ++    GD V++
Sbjct: 375 VVLIGRDSDLIAAALGDAVPQVRATSLDDAIAHCKALAQPGDAVLL 420


>gi|120437102|ref|YP_862788.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
 gi|189028993|sp|A0M526|MURC_GRAFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117579252|emb|CAL67721.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
          Length = 452

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 135/376 (35%), Gaps = 48/376 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +A+ G+ GKTTT  +L   L     K  A +G  +  I   L    +       
Sbjct: 111 TDQKYCLAVAGTHGKTTTTAILGHLLKETGAKVTAFLGGISEDIQSNL----IMQGDKVV 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E        ++     + P++A IT++   HL  +    E+  +  E    + + G +
Sbjct: 167 VVEADEFDRSFLK-----LSPNLAAITSMDADHLDIYGDKSELEKSFREFAAKVPEDGKL 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F+                       S G + N+DF  +  +        +++   ++++ 
Sbjct: 222 FV--------------KNGLPVNGSSVGINDNSDFSAQNIRIEEGSYVFDLKTPSETIKN 267

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  +  G H   N +  L +       +    +AL  F   +   +R+   + +    LI
Sbjct: 268 LKFNLPGNHNLLNAITALAMAIEYGTSIHDLTRALYSFKGVK---RRFSYKIKKDHLVLI 324

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-------- 394
           D+ Y  +P  + A    + ++ P+   + +AV      +   ++ F  D A         
Sbjct: 325 DD-YAHHPTEISAVHQAVREMYPNK--KVLAVF--QPHLFSRTRDFAEDFASSLSDFDKV 379

Query: 395 -VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +L +Y    + + G     L D +  +           L   I++   + +VVV+  + 
Sbjct: 380 FLLDIYPARELPIEGISSAWLLDKISNTNKALI--QKKNLSEMIKTE--EAEVVVMMGAG 435

Query: 454 SCG--FYRLINLLLEE 467
             G    ++   LL E
Sbjct: 436 DIGEEVEKVKKALLHE 451


>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
 gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
          Length = 459

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 138/403 (34%), Gaps = 54/403 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +    +++      ++ V    D+            +     II+ TG+ GKTTT   + 
Sbjct: 59  IPWKAELLKVAKEKNVKVISEIDL--------AYKYVDKNVKIISFTGTNGKTTTSTKMA 110

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+         G+          L      +D+ + EL    L         +  +IA
Sbjct: 111 ELLNFSGFRAKLAGNAGFSF---AKLVADEEKLDYIVLELSSYQLEN----NPQIHSNIA 163

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--------- 238
            I  + P HL+ ++ +E+    K  IF+   ++    +N DD  FE L  +         
Sbjct: 164 GIINLTPDHLTRYNSVEDYYITKFNIFDKQVESDFALINLDDKEFEKLYERNEIKEKIKS 223

Query: 239 ------SHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                 +   G   +Y        DF  ++ + +   E      ++  K+ E+     G 
Sbjct: 224 KKIYLSTETKGTIFVYKNDICIMKDFKKRIDEIENFDENVDKVSEILMKTDELSLK--GK 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +NML  +G   IL    +                 R      +G    I++S   N 
Sbjct: 282 HNLENMLFLIGSAKILNISNEKI---SEFLKSTVALEHRLENFFIKGNTIFINDSKGTNV 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S   AI              I +LG     G+  +  ++ L E +       V+L G +
Sbjct: 339 ESTLKAIDSFDN-------SIIMILG-----GDDKKIDNMPLIERIKE-KADFVYLIGDN 385

Query: 411 VLALKDALPRSIHVHYS--ETMDGLFLFIQSSL--VDGDVVVV 449
              L D + +  + +Y   ET++ +  +++ ++       V+ 
Sbjct: 386 AQILIDDMEKIGYKNYKNLETVENVLNYLKENIDFSKNQTVLF 428


>gi|330446841|ref|ZP_08310492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491032|dbj|GAA04989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 446

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 119/347 (34%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++AITGS GK+T   ++              G+          L  +       
Sbjct: 104 REVDKPVVAITGSNGKSTVTSLVGEMAKEAGIDVGVGGNIGF-----AALDMLAQQHQLY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    AV   ++  H+  +  G+ + + AK  IF+  +    
Sbjct: 159 VLELSSFQL----ETTSSLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDHAK---L 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD       A         + SFG  +    Q         + W+ V  +     
Sbjct: 212 AVFNRDD------LATKPTQFSGAMTSFGFDE----QAYGIVSVDGKEWLVVNGEAVMAV 261

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +        D    +        G   R + A+N+     +
Sbjct: 262 ADIALVGRHNVANCLAALALADAAGVPRDA---SCRAMQHYTGLAHRCQLAVNRHGVRWV 318

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N AS  AA++ L       EG+   ++G     G+   +   +L  VL+  N+ 
Sbjct: 319 NDSKATNLASTLAALNGLQ-----LEGKLHLLMG-----GDSKGAEFSELKPVLADLNV- 367

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L D +  +  V   ETM      +  ++  GD+V++
Sbjct: 368 QLYSFGRD-RHLFDDVTNN--VISVETMSEAMEQVSRTVQSGDMVLL 411


>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes LO28]
          Length = 178

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             ++   +    +    IG+    IG  +
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQI 144


>gi|219670075|ref|YP_002460510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfitobacterium hafniense DCB-2]
 gi|254766050|sp|B8FT58|MURD_DESHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219540335|gb|ACL22074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 106/327 (32%), Gaps = 30/327 (9%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++        K+    G+    +   +       +    + EL    L     L   +  
Sbjct: 124 LIGELARRTGKSTLVAGNIGVALSDQVENL---DEEGIIVAELSSFQL----ELVDSLCM 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++ ++  + P HL     +E   +AKA IFE    +    LN+DD+    L     A  +
Sbjct: 177 NVGILLNVTPDHLDRHGTLENYLAAKARIFEKQRPSDCAILNWDDARVRELAPHLKARVV 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +   ++    Q  +     +    ++    K  E      G H  +N++ ++  V 
Sbjct: 237 FFSPTSLLAEGYGVQGDEIVLARDG---KITPIIKRRE--LQLRGNHNLENIMASIAAVR 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L  F   E    R            I++S   NP + + A+    +  
Sbjct: 292 ELGLSWEEIAQGLREFKGVE---HRQEVVGTYEGILFINDSKGTNPDAAEKALYAFEEPI 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G +                FH D  + +    +  + L G     ++ A   +   
Sbjct: 349 VLIAGGK-----------NKGLDFH-DFMKTVKE-QVKSLVLVGSAAAEMEQAAKDTGIR 395

Query: 425 HY--SETMDGLFLFIQSSLVDGDVVVV 449
           HY  +ET         +    G+VV++
Sbjct: 396 HYLRAETFAEAVELAIAEAEPGNVVLL 422


>gi|289640742|ref|ZP_06472913.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509318|gb|EFD30246.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 500

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 132/390 (33%), Gaps = 55/390 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L +   ++A+ GS GK+TT  MLT+ L +           +    +   +A++  +   G
Sbjct: 108 LTAGYDLVAVAGSHGKSTTSAMLTLVLRAAG--------VDPTAVIGAEVAQLGGNALVG 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +    E       + P +AVIT +   H   F     +  A       +   GT+
Sbjct: 160 AGRVFVLEADEYGGAFAGLDPALAVITNVEWEHPDLFPDEASVRRAFTAFAARVRPGGTL 219

Query: 224 FLNYDDSFFELLKAKSHAL------------------GIKTIYSFGKSKNADFQLRKWKQ 265
            +  DD     + A   A                   G   +  +G      +Q    + 
Sbjct: 220 VVCGDDPGVRAVLAALPASAPVSESGSDAGPGDTTGGGRARVIDYGLQPGRSWQAVNLRT 279

Query: 266 C-SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                    V+  G  +  +     G H  +N L  L   + L  +V +A+  L+ F   
Sbjct: 280 TPGGGQRATVRHDGDDVGTLTLALPGAHTVRNALAVLAAATELGVEVASALAILATFTGA 339

Query: 324 EGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGR 370
           + R      A     QG   +ID+ Y  +P  ++A ++   Q          + PH   R
Sbjct: 340 DRRFTLVGTAPATDRQGPLEVIDD-YAHHPTEIRATLAAARQRAGTREVWVAVQPHTFSR 398

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
             A+L D  +    + +  + + ++ +      +   G H   L   +      +Y    
Sbjct: 399 LAALLDDFAD--AFTDADRVYVTDIYAAREHDTL---GLHACDLVKKISIPQAAYYVP-W 452

Query: 431 DGLFLFIQSSL-------VDGDVVVVKSSN 453
           D L   + + L        DG +++   + 
Sbjct: 453 DKLTDRLATDLSTSRLSTPDGVLLLTLGAG 482


>gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIIAITGSNGKSTVTTLVGEMAKAAGINVGVGGNIGLP-----ALMLLDTDRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +   T
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---T 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG        +  +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCISFGVD------VGDYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++K L+ F    G   R++  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKVLTTFT---GLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + +      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QLDGTLYLLLGGDGKSADFTP-----LKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P       +ETM+     I   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAELAELRPE--VAVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|90580815|ref|ZP_01236618.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
 gi|90438083|gb|EAS63271.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
          Length = 462

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 133/405 (32%), Gaps = 52/405 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 76  LVVIGNAMSRGNPCVEYVLNKNLRYTSGPQWLQEYLLHDRWVMAVSGTHGKTTTASMLAW 135

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 136 ILEDCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-----FLNYDDSFFELLKAKSHA 241
            ++  +   H   F  ++ I      +   +   G I       N D++      ++   
Sbjct: 193 LIMNNLEFDHADIFDDLKAIQRQFHHLVRTVPSNGRILAPKGVKNIDETLEMGCWSELEY 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTL 300
           +G             D   R  K  ++ S  +V L    +  VH   +G H   N LM +
Sbjct: 253 IG------------GDGHWRAEKHHADGSVFDVYLDSDIVGTVHWPLVGDHNVNNALMAI 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +    + A +AL+ F   +   +R          T+ D+ +  +P +++  +  L
Sbjct: 301 AAARHVGVKPELACEALAKFINTK---RRLELKGEVSGVTVYDD-FAHHPTAIELTLGGL 356

Query: 361 SQISPHGEGRRIAVL----GDMCEMG----ELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411
              +   + R +AVL      M  +G    +L+ S H              V+     ++
Sbjct: 357 R--AKVNQSRILAVLEPRSNTMK-LGVHKDDLAPSLHA----------ADEVFFFQPPNI 403

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +        + S  +D L   I +    GD ++V  SN 
Sbjct: 404 PWSVEEIAEQCSQPAYCSADLDDLVNNIANKAQPGDTILVM-SNG 447


>gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 853

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 133/384 (34%), Gaps = 56/384 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------- 155
           +  ++A+ G+ GKTTT  ++   L   K       +   +I                   
Sbjct: 467 RIPVVAVAGTNGKTTTVRLIAHILQGNKYRVGMTSTDGVYIENKRIDTGDCSGPRSARNV 526

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKA 211
            M  DVD  + E   +  G +R      R ++AV+T I    HL     S +E++A  K 
Sbjct: 527 LMHPDVDAAVLE--TARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKR 584

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCS 267
            I + +   GT  LN  D     +          ++  F +  N    A  + +  +   
Sbjct: 585 VIVQNVAPNGTAVLNAADPMVANMAGSCPG----SVTFFAQDSNHAVLATHRAQGHRVLF 640

Query: 268 EQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +   + V  +GK         + + H+G      +N +  +G    L  D +  ++ L  
Sbjct: 641 QDGNVIVLSEGKFEHRIQLSDIPITHNGTVGFQVENAMAAIGAAWGLGLDWNVVLEGLRT 700

Query: 320 FHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           F         R+    ++G   + D  Y  NP +++A    +  +    + R + + G  
Sbjct: 701 FENSASSTPGRFNIFSHKGATVIAD--YGHNPDAIEALTRAVEGMPA--KRRMVVISGAG 756

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSE 428
               E  +     L +         V L           G  +  L+D L  +    +++
Sbjct: 757 DRRDEDLRRQTQILGD-----AFDDVILYEDQCQRGRADGEVLALLRDGLSNAKRTRFTQ 811

Query: 429 TMDG---LFLFIQSSLVDGDVVVV 449
            + G         + L  GD+ ++
Sbjct: 812 EIQGEFIAIDTALAKLEAGDLCLI 835


>gi|327313069|ref|YP_004328506.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
 gi|326946343|gb|AEA22228.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 153/426 (35%), Gaps = 45/426 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    +K A  +VV T  + +  +    V+  ++      +  V   L      +   G+
Sbjct: 63  IPEECRKPASTLVVFTPAIPASHAEL--VYFHENGFEIQKRAQVLGTLTRTHKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M    +        A +G  + + G    L+      DF + E       E 
Sbjct: 121 HGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILS---GRSDFVVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +     E ++K G + L       + L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALIL------HKGL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
           + K H      +Y + ++ + DF     +        +     ++++ V  G       +
Sbjct: 227 EMKQHVQEGVKVYEYSRN-DGDFHAENVRIADGAITFDFISPIENVKDVELGQPIPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +     D   + +  +   +   +R+   +       + + Y  +P  + 
Sbjct: 286 NGIAAMAMAQLNGCTADELRRGMKTYGGVD---RRFDFKIKNSRHVFLSD-YAHHPKEIL 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVW 405
            +   L ++ P    R++ V+     +   ++ F+ D A  LS         +Y      
Sbjct: 342 QSAKSLKELYPD---RKVTVIFQ-PHLYSRTRDFYKDFASALSHFDEVILTEIYPAREEP 397

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLI 461
           + G     + D L   +     +  D +  F++S   D DV+VV  +          ++ 
Sbjct: 398 IPGVTSSLIYDNLRPGVEKQMIK-KDDVLDFVRS--RDFDVLVVLGAG--NLDNYVPQIT 452

Query: 462 NLLLEE 467
            LL E+
Sbjct: 453 ELLNEK 458


>gi|325132242|gb|EGC54936.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M6190]
 gi|325138166|gb|EGC60737.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           ES14902]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 128/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +         + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RIGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHGKLLDALR 458


>gi|261405664|ref|YP_003241905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
 gi|261282127|gb|ACX64098.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
          Length = 477

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 130/412 (31%), Gaps = 47/412 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              +  G  L+V N  +  S+     PV    ++   +      A    +A +I ITGS 
Sbjct: 66  DELIHPGVALLVKNPGIPYSVP----PVQKAIELEIPIVTEVEIAYRLCEAPMIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT   +   L +   +    G+    +      A    + D+ + EL    L     
Sbjct: 122 GKTTTTTWVGKLLENAGLSPIVAGNIGTPLSEAAATAT---EHDWMVVELSSFQLKG--- 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T   RP I+ +  +   HL    G+++  ++KA++F       T  LN+DD     L  
Sbjct: 176 -TEAFRPRISCLLNVTETHLDYHGGMDDYVASKAKLFANQTSEDTAVLNWDDPVCRNLVP 234

Query: 238 KSHALGIKTIYSFGKSKNADF---QLRKWKQCSE--QSWMEVQLQGKSMEV------VHH 286
              A  +    S    +            +   E  Q    +   G+             
Sbjct: 235 YIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDCQGRRIIYTDGEGFTHEIIRVENIG 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N +    I        D   +ALS F   E    R          +  + S 
Sbjct: 295 LPGRFNVGNAMAACAIAIAAGVAPDKLEEALSSFRGVE---HRLEFVAELQGVSYYNNSK 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A++   +         + + G   + G   +     +        +  V L
Sbjct: 352 ATNSKATHMALTSFKE-------PVVLIAGG-LDRGSDYEELIPSM-----QGRVKAVVL 398

Query: 407 SGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVD-------GDVVVV 449
            G     + +A  ++    +   +  +     + S++         GD+V++
Sbjct: 399 LGETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESGDIVLL 450


>gi|193301875|gb|ABV90250.2| sporulation protein A [Bacillus subtilis subsp. sadata]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 114/346 (32%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + 
Sbjct: 111 TSAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGT---VASEVAYHADGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RP I++I  +  AHL      E    AK +++     +    +
Sbjct: 168 ELSSFQLMG----THAFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L     A  +    S    + A  +        E            +E V 
Sbjct: 224 NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAIL--------PLEEVV 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + +V    A  +   K L+ F   +    R +           ++S
Sbjct: 276 -LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVK---HRLQYVTTVNGRKFYNDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S           + + +L    + G         +       ++  V 
Sbjct: 332 KATNILATSKALSAFD--------KPVILLAGGLDRGNGFDDLKPYM------KHVKAVL 377

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L+         HV   + ++       +   +GDV+++
Sbjct: 378 TFGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|117620663|ref|YP_858019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562070|gb|ABK39018.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 456

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 138/413 (33%), Gaps = 38/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   +     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVVGNAMSRGNPCVEYVLDRNLPYISGPQWLLEHVLQDRWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L   K      IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 VLEYAKLEPGFLIGGVPGNFPVSARLGSAP----FFVIEADEYDCAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +   G +     D     ++       ++
Sbjct: 180 TLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPKGDENLAAVRKMGCWSEVE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +         D Q +  K   + S  EV L G K  EV    IG H   N LM +    
Sbjct: 240 LV------GQDDAQWKAVKLADDGSAFEVWLDGVKQGEVHWECIGEHNVNNGLMAIAAAR 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+  I AL  F   +   +R          ++ D+ +  +P +++  +  L   +
Sbjct: 294 HAGVMVEHGIAALCQFKSPK---RRMELKGEVAGISVYDD-FAHHPTAIETTLGGLR--A 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLY-NISHVWL-----SGFHVLALKD 416
             G+ R +AVL    E    +     H +  E+   +     V+       G+ +  +  
Sbjct: 348 KVGKARILAVL----EPRSNTMKLGVHKE--ELAGCFDGADEVFFFQPPNIGWDLGEVTA 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + R   V     ++ L   + +   DGD +++  SN  GF  + + L+    
Sbjct: 402 HMTRPAKV--FNDLETLINRLVAECRDGDHILIM-SNG-GFGGIHDKLIARLK 450


>gi|312881956|ref|ZP_07741713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370392|gb|EFP97887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 450

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 143/408 (35%), Gaps = 31/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        ++  L     ++A++G+ GKTTT  MLT 
Sbjct: 64  LVVIGNALSRGNPCVEFVLNRQIRYVSGPQWLSEFLLQDRWVLAVSGTHGKTTTASMLTW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          +G    + GV   L +      F + E            +  V   P 
Sbjct: 124 ILEKCGYEPGFLVGGVLGNFGVSARLGK----SVFFVVEADEYDSAFFDKRSKFVHYHPK 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D        +   +  +
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPSVGRILFPQQD-------QEIKDVLSR 232

Query: 246 TIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGI 302
             +S  +S     D+Q    KQ ++ S   V  +GK +  V  + IG H   N LM +  
Sbjct: 233 GCWSESESSGIGGDWQAE--KQHADGSQFAVFFEGKKVASVNWNLIGNHNINNALMAIAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  +   A +AL  F   +   +R           + D+ +  +P +++  +  L  
Sbjct: 291 ARHVGVEPLHACEALDTFINTK---RRLELKGMVNGVEVYDD-FAHHPTAIELTLESLR- 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            +     R IAVL        + +  H + LA  L   +   ++       +L+D   + 
Sbjct: 346 -NKASGKRIIAVLE--PRSATMKRGVHKNSLARSLDEADAVFLYQPDNINWSLEDVASQC 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 S+ ++ L   + + +  GD + V  SN  GF  +   LL E 
Sbjct: 403 RGEAAVSDNIEELVAAVTTFVQSGDRICVM-SNG-GFDDIHTKLLTEL 448


>gi|34580522|ref|ZP_00142002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
 gi|28261907|gb|EAA25411.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
          Length = 500

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 129/409 (31%), Gaps = 83/409 (20%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++V    S +IP+    D+L A                IAITG+ GK+TT  +++  L+
Sbjct: 77  HEIVNIAKSFNIPITSDIDLLFA---------KSKNLKFIAITGTNGKSTTTALISHILN 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S    Y   G+        ++  +     D  + EL    L  ++  T      IAV+  
Sbjct: 128 SSGLDYPVAGNIG------VSALQAKASKDGYVLELSSFQLDLVKTFTA----KIAVLLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL     +    +AK++IF+ +++     +N D+ +   +  K        +  F 
Sbjct: 178 ITPDHLDRHQDMTCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFS 237

Query: 252 KSK--NADFQLRKWKQCS---EQSWMEVQLQGKSM------------------------- 281
            ++       +   K  +   +    E+Q   +S                          
Sbjct: 238 VAQILENGISVVDDKISANFFDDISFELQHNSESFRQDEFQGEPAEPECIKIRKHRQDLQ 297

Query: 282 ------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                           +  G H  +N+  +  +  I+  +    ++++S F        R
Sbjct: 298 NSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLP---HR 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   +    +  ++S   N  S   +I  L  I     G          E G       
Sbjct: 355 MQYIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGI-------PKEGG------- 400

Query: 390 IDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
               E +  Y  +I   +  G       +     +     + ++  F  
Sbjct: 401 ---IEEIKPYFSHIKKAYFYGQAKEIFANTAKNIVDFVICDNLEQAFDL 446


>gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK115]
          Length = 481

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 179/501 (35%), Gaps = 82/501 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  +   ++ +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLL---MDHSRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N D   F+++K +  ++           ++  +        ++      +  GK +   
Sbjct: 241 VNSDMDHFQIVKEQVASM-----------EHDFYGAGSSNTITDSQAFSFEAAGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++        G+        G  
Sbjct: 290 DIQLIGRFNQENAIAAGLACLRL----GASLEDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         +A+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPIAIAEEIASYIS-YPVEKIADREEAIKKALSLTDQEGDAVILA 453

Query: 450 -KSSNSCGFYRLINLLLEEFP 469
            K +++   Y+++      +P
Sbjct: 454 GKGADA---YQIVEGEKVAYP 471


>gi|282859037|ref|ZP_06268173.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
 gi|282588205|gb|EFB93374.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
          Length = 459

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 129/368 (35%), Gaps = 37/368 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      +   G+ GKTTT  M    +        A +G  + + G    L+ 
Sbjct: 101 RAQVLGTLTKTHKGLCFAGTHGKTTTSSMCAHIMHQSSVDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E       E     H +RP + VIT+  P HL  +   E    +     E
Sbjct: 160 --DKSDYVVIEA-----DEFDRSFHWLRPWMTVITSTDPDHLDIYGTKEAYLESFRHYTE 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + ++ D      L+ + +     TIY + + +  DF     +        +  
Sbjct: 213 LIQPGGALIIHKD------LEVQPNVQEGVTIYEYSREEG-DFHAENIRIKEGTIVFDFI 265

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              ++++ V  G       +N +  + +  +     +   + +  +   +   +R+   +
Sbjct: 266 SPIETIKNVELGQPIPINIENGISAMAMAQLNGVSANEIREGMRTYGGVD---RRFDFKV 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 ++ + Y  +P  +   +     +      R++ V+     +   ++ F+ + A+
Sbjct: 323 MNSKHVVLSD-YAHHPKEI---LQSAKSLKELYADRKVTVIFQ-PHLYTRTRDFYKEFAD 377

Query: 395 VLS---------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS         +Y      + G     + D L   I        D +  F++S   D D
Sbjct: 378 ALSFFDEVILTEIYPAREEPIEGVTSALIFDNLKAGIEKQLI-VKDEVLNFVKS--RDFD 434

Query: 446 VVVVKSSN 453
           V+V+  + 
Sbjct: 435 VLVILGAG 442


>gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
 gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
          Length = 523

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 144/474 (30%), Gaps = 71/474 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++  A   GA   V         G        V
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPEGKGMH---ALVV 90

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN 145
            DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I     A   S ++
Sbjct: 91  RDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDD 150

Query: 146 ------------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                        +  P +L      R  VD       + +S     +     +   +  
Sbjct: 151 IVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGF 210

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIK 245
              I P H+         +    K ++     K     +N   D F E+  A +      
Sbjct: 211 FLNITPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAMSDHFDEIYAAATTTTNPD 267

Query: 246 TIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGY 290
           +IY F ++        +  DF+ +  +   +++  ++              +     IG 
Sbjct: 268 SIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIGD 327

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    +    +   + +   K           G+            ++D  Y  N 
Sbjct: 328 FNEMNGTAAIIGAGLAGENYEECAKG---IRHVTIPGRMEALPSKNHGTVIVD--YAHNK 382

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
           ASM A +S +         + I V+G     G+   S     +E L+ Y     +L    
Sbjct: 383 ASMMALMSFMQ--REFNNPKIIVVVGAP---GDKGVSRRPGFSESLTAY-ADKAFLTTDD 436

Query: 407 SG-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
            G    + +   +   I     +       +       +     D+V++  K +
Sbjct: 437 PGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGA 490


>gi|83589692|ref|YP_429701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
 gi|118595666|sp|Q2RK81|MURD_MOOTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83572606|gb|ABC19158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
          Length = 455

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 110/355 (30%), Gaps = 35/355 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
               L     ++AITG+ GKTTT  +    L          G+    I +   L  +   
Sbjct: 100 AYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGNIG--IPLVKELQEIAPG 157

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    L  I        P +A I  I P HL     +E   +AKA +    E 
Sbjct: 158 S-YVVCEVSSFQLEAI----TSFHPQVAAILNITPDHLDRHGSLENYIAAKARVMAYQEA 212

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL---RKWKQCSEQSWMEVQL 276
                LNYDD     L   + +     +  F + +              C   +   V+L
Sbjct: 213 RDFAILNYDDPHTRSLAGGARS----RVLFFSRRERPPLGAWLEDGVICCDLGAGGTVKL 268

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H  +N +    +   L  D +   + L  F        R       
Sbjct: 269 ---CHCEELSLKGSHNLENSMAAALVALALGVDPEQLTRTLKTFPAVP---HRLEPVAEI 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   NP +   AI+  S          + + G   +  + +           
Sbjct: 323 NGVCYINDSKGTNPEATMKAINAYSN-------PLVLIAGGRNKGSDFTLLAQQMAGR-- 373

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               + H+ L G     L+ A  ++    ++ +            +   GD+V++
Sbjct: 374 ----VKHLVLVGEAARELEQAARKAGIDSIYLAPDFASAVREAAGAARPGDIVML 424


>gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1087]
          Length = 481

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 170/484 (35%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDCISYDSREADASTLFF-VKGEAFK-REFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N    +F+++K +  +L       +G   N   +        +      +  GK +   
Sbjct: 241 VNSGMDYFQIVKEQVASLEHD---FYGAGSNNTIK--------DSQAFSFEAAGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++        G+        G  
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLSNLLSVVQE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|208435362|ref|YP_002267028.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
 gi|208433291|gb|ACI28162.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
          Length = 447

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 136/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ +TG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGVTGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A+++AL  K   
Sbjct: 165 NITSDHLDFHQNIENYRDAKNSFF---KDEGLKVINRDETNALFNPINARTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + +  EV L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLTPSISASLCYQQDLRDPNLKEVAL------MHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++  +  L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLEAIVPLLENFYGVKGRLEVVHSK------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    +  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GINDSSKVIIEKDRKKAILNALENLKDDEVLLILG 415


>gi|317010132|gb|ADU80712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori India7]
          Length = 447

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 132/398 (33%), Gaps = 59/398 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDSNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++  T  +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYGDLEEAVRLKCEYFIMEVSSHAIVQKRTAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHQNIENYRDAKNSFF---KDEGLKVINRDETNVLFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKW--------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLG 301
              K A   ++ +          C +Q   ++ L+ +   +    +G +   N+L   LG
Sbjct: 214 ALDKKAHLNVQAFSLNPFISASLCYQQDLRDLNLK-EIALIHSPLLGRYNLYNILAGVLG 272

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    ++     L  F+  +GR +            L+   +      M+       
Sbjct: 273 VKLLTQLPLEVIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFK 326

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLA 413
                   +  A+ G     G+  ++    +  + S Y    +  S           +  
Sbjct: 327 NQ------KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKD 377

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +   +  S  V   +      L    +L D +V+++  
Sbjct: 378 ILKGISNSSKVIIEKDRKKAILNALENLKDDEVLLILG 415


>gi|227326193|ref|ZP_03830217.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 461

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 136/382 (35%), Gaps = 45/382 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +  +G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIILPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           +D   + +         + +      +   ++ +K    ++ S  +V L  + +  VH  
Sbjct: 222 NDLNLKQVMGMGCWSEQELV-----GEEGTWRAQKV--STDASQYQVYLNKELVGEVHWK 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R      +   T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINAR---RRLELRGTEHGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +S L      G  R +AVL      M  +G         L          
Sbjct: 331 AHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMK-LGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLFQPAHIPWQVVEVAEACVQ--PAHWSADIDTLVENIVKTAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLE-------EFPAIQ 472
             + N LL+       +  A+Q
Sbjct: 439 SNIHNKLLDGLKNKAQKAKAVQ 460


>gi|253699155|ref|YP_003020344.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
 gi|259509788|sp|C6DZK4|MURD_GEOSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251774005|gb|ACT16586.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
          Length = 452

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 116/344 (33%), Gaps = 29/344 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            KA ++AITG+ GKTTT  +      +        G+  N +   + LA    +V   + 
Sbjct: 106 IKAPMVAITGTNGKTTTTTLTGEIFKACGFETFVGGNIGNPL---IELAESGQEVARVVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +       RP +AV+  I   HL  +   +E   AK  IFE         L
Sbjct: 163 ELSSFQLEGVE----SFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFENQTADDFAVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD       +K  A            +   ++        +   +    +G  ++   
Sbjct: 219 NIDDPLVAACASKLKAQLFPMSRLHELEEGISYRDGFITFSHKGKVLRFGTEGFKLK--- 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N++ +L    ++  D D A +A+  F   +G   R             ++S
Sbjct: 276 ---GVHNLDNIMASLASTLLMRCDGDCAYEAVKSF---KGLPHRMELVEEIDGVAYYEDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S+  ++                + G   + G             L    +SH+ 
Sbjct: 330 KGTNVGSVVKSLESFDSG-------ITLIAGGKDKGGSYEP------LAPLVESRVSHLV 376

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     ++ AL      H ++T++      +     G VV+ 
Sbjct: 377 LIGEAKARMQQALGSLTDTHEAQTLEEAVEIARRLTKPGGVVLF 420


>gi|157828435|ref|YP_001494677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933147|ref|YP_001649936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. Iowa]
 gi|157800916|gb|ABV76169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908234|gb|ABY72530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           rickettsii str. Iowa]
          Length = 500

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 128/409 (31%), Gaps = 83/409 (20%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++V    S +IP+    D+L A                IAITG+ GK+TT  +++  L+
Sbjct: 77  HEIVNIAKSFNIPITSDIDLLFA---------KSKNLKFIAITGTNGKSTTTALISHILN 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S    Y   G+        ++  +     D  + EL    L  ++  T      IAV+  
Sbjct: 128 SSGLDYPVAGNIG------VSALQAKASKDGYVLELSSFQLDLVKTFTA----KIAVLLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL     +    +AK++IF+ +++     +N D+ +   +  K        +  F 
Sbjct: 178 ITPDHLDRHQDMPCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFS 237

Query: 252 KSK--NADFQLRKWKQCS---EQSWMEVQLQGKSM------------------------- 281
            ++       +   K  +   +    E+Q   +S                          
Sbjct: 238 VTQILENGISVVDDKISANFFDDISFELQHNSESFRQDEFQGEPAEPECIKIREHRQNLH 297

Query: 282 ------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                           +  G H  +N+  +  +  I+  +    ++++S F        R
Sbjct: 298 NSLVSSFMHYTVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLP---HR 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   +    +  ++S   N  S   +I  L  I     G          E G       
Sbjct: 355 MQYIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGI-------PKEGG------- 400

Query: 390 IDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
               E +  Y   I   +  G       +     +     + ++  F  
Sbjct: 401 ---IEEIKPYFSQIKKAYFYGQAKEIFANTAKHIVDFVICDNLEQAFDL 446


>gi|307564720|ref|ZP_07627250.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
 gi|307346648|gb|EFN91955.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
          Length = 459

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/409 (16%), Positives = 144/409 (35%), Gaps = 41/409 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A +  A  +++ T  +         VF  ++      +  V   L      +   G+
Sbjct: 63  IPNACRNKANTLIIYTPAIPVSHKEL--VFFKENGFEIQKRAQVLGTLTRTHRGLCFAGT 120

Query: 117 VGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTTT  M    +  SS+  T A +G  + + G    L+      D+ + E       E
Sbjct: 121 HGKTTTSSMCAHIMHQSSVGCT-AFLGGISKNYGTNYILSN---KSDYVVIEA-----DE 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H +RP + VIT+  P HL  +   E    +     E ++  G + ++ D      
Sbjct: 172 FDRSFHWLRPWMTVITSTDPDHLDIYGTKEAYLESFRHYTELIKAGGALIIHKD------ 225

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMA 293
           L+ K +      +Y + + +  DF     +        +     + ++ V  G       
Sbjct: 226 LEMKPNVQEGVRVYEYSREEG-DFHADNVRIKDGTIIFDFISPIEPIKDVELGQPIPINI 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  + +  +     +   + +  +   +   +R+   +      ++ + Y  +P  +
Sbjct: 285 ENSIAAMAMAQLNGVIPNEIREGIKTYSGVD---RRFDFKVKNAKHVVLSD-YAHHPKEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHV 404
              +     +      R+I V+     +   ++ F+ + A  LS         +Y     
Sbjct: 341 ---LQSAKSLKELYSNRKITVIFQ-PHLYTRTRDFYKEFAYSLSFFDEVILTEIYPAREE 396

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            + G     + D L   +        D +  F++S   D DV+V+  + 
Sbjct: 397 PIEGVTSKLIYDNLKEGVQKQMI-LKDSVLSFVKS--RDFDVLVILGAG 442


>gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
 gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
          Length = 438

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A IIAITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDTDRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E      T
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN---AKT 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG        +  +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADDRCISFGVD------VGDYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + +      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QLDGTLYLLLGGDGKSADFTP-----LKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L +  P       +ETM+     I   +  GD+V++
Sbjct: 365 I-RLYCFGRDGAELAELRPD--VAVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500772|sp|Q4ZNY8|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 448

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 126/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +V+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDEVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNGQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S      +A 
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAR 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVPLLRVDTVQAAVEHSAKLAQCGDAVLL 420


>gi|237729160|ref|ZP_04559641.1| Murein peptide ligase [Citrobacter sp. 30_2]
 gi|226908889|gb|EEH94807.1| Murein peptide ligase [Citrobacter sp. 30_2]
          Length = 458

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 140/416 (33%), Gaps = 38/416 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEACGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGEVKWGLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVVPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPR 420
            G  R IAVL      M  MG         L           V+L    H+      +  
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVAE 401

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPA 470
           +     H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A
Sbjct: 402 ACVQPAHWSGDVDALADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAQA 455


>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----ATDQH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL      ++    AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYNHCMQNYVDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG 278
                   DD   +    K         +S  K   A   +   + + +E     ++   
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGLCAHLYPFSAMKEDGAIAYVEDGEVEINEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++   + +   +ALS F   E    R         
Sbjct: 264 ---QEKLALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVE---HRLEKVATVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + + +LG     G+   + + ++ +++  
Sbjct: 318 VEFINDSKATNVNSCWYALQSMKT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L D   R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLL 417


>gi|210135661|ref|YP_002302100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori P12]
 gi|210133629|gb|ACJ08620.1| UDP-murnac-tripeptide synthetase [Helicobacter pylori P12]
          Length = 447

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 126/397 (31%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  I      F + +S    ++     +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F      G   +N D          +       ++++
Sbjct: 165 NITSDHLDFHQNIENYRDAKNSFF---RDDGLKVINRD--------ETNALFNPINVHTY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG-------KSMEVVHHGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q        +   +    +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNVQAFSLTPFISASLCYQQDLRDPNLKEIALMHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++  +  L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIVPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    +  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVIIEKDRKKAILNALENLKDDEVLLILG 415


>gi|297521770|ref|ZP_06940156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli OP50]
          Length = 127

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L
Sbjct: 1   VKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSL 60

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++    
Sbjct: 61  TRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS---V 117

Query: 242 LGIKTIYSFG 251
           +G + ++ F 
Sbjct: 118 IGSRKVWRFS 127


>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
          Length = 453

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 116/354 (32%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 104 FAGRYTDAKMICITGSNGKTTTTMLTYHILRQAGVDVGLAGNVGNSLALQV----AEDPH 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  +  IA++  I P HL  ++  ++    AK  I +    
Sbjct: 160 AVYVIELSSFQLDNM----YDFKADIAILLNITPDHLDRYNYEMQNYVDAKFRILQNQTA 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++  A       K  +E   + ++    
Sbjct: 216 EDAFIFWNDDPIIAREIAKRHPEA--TLYPFAETHEA-----GVKGYTEDKKIRIETSNG 268

Query: 280 SMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +   +    G H   N L +     ++    +    +LS F   E    R       
Sbjct: 269 TFTMEQDLLALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTGVE---HRLEKVARV 325

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 326 RGVDYINDSKATNVNSCWYALQSMTT-------PLVLILG-----GTDKGNDYSEI-EEL 372

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + V   + +M+            GD V++
Sbjct: 373 VKKKVHALIFLGVDNTKLHAFFDGKVPVIEDARSMEEAVSKAYKLAEKGDTVLL 426


>gi|311748588|ref|ZP_07722373.1| UDP-N-acetylmuramate--alanine ligase [Algoriphagus sp. PR1]
 gi|126577112|gb|EAZ81360.1| UDP-N-acetylmuramate--alanine ligase [Algoriphagus sp. PR1]
          Length = 470

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 40/371 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLA-RMPVDVDFGIFEL 167
            IA+ G+ GKTTT  ++   L    K   A +G    +    L L  +   +    + E 
Sbjct: 115 TIAVAGTHGKTTTSSLIAHLLKDGGKPVAAFLGGITQNYQSNLILGDKKSKEKSVVVVEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-- 225
                  +R     + P+ A+IT+    HL  +     I     E  + ++K G +F+  
Sbjct: 175 DEFDRSFLR-----LHPNEAIITSTDADHLDIYGDENTILEGFGEFTKLIDKKGKLFIQF 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           N  D   E          +  I +  +G       +    +  +     +     K ++ 
Sbjct: 230 NAADRLGE--------SRLPKIVTRKYGLRSEG-IRAENIQAKAGSFLFDYVDGDKVIKG 280

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G+H  +N L  + I        +   K L  F   +   +R+   +N+     I
Sbjct: 281 LELFIPGFHNVENALAAIAIAIEQGVSDEQVKKGLGSFKGVK---RRFEIHVNREQLVYI 337

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVL 396
           D+ Y  +P  ++A +S +  + P  +   I          D  E    S S   ++  +L
Sbjct: 338 DD-YAHHPEEIRACLSSVIAMYPASKLTVIFQPHLYSRTRDFAEGFSESLSLADEVV-LL 395

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSC 455
            +Y    + + G     L + +     V    + +GL  ++  S  +   ++V   +   
Sbjct: 396 DIYPARELPIPGVSSEMLLENIQAKEKVIV--SKEGLMDYLAKSNPE---ILVTLGAGDI 450

Query: 456 GFYRLINLLLE 466
              RL+  + E
Sbjct: 451 --DRLVPKIAE 459


>gi|116328899|ref|YP_798619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330494|ref|YP_800212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281748|sp|Q04UG6|MURD_LEPBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122283318|sp|Q04Z09|MURD_LEPBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116121643|gb|ABJ79686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124183|gb|ABJ75454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 134/407 (32%), Gaps = 49/407 (12%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
            P+         + D   F   ++   +  ++    +++      IPVF   D+      
Sbjct: 42  QPETISVPFFHDNIDPRSFFEISLIIKSPGILPTHPILSYAVEKKIPVFSEIDL------ 95

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                R   K  II ITG+ GK+TT  ++   L          G+               
Sbjct: 96  ----GRFFFKGKIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSF-----CK 146

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +   + EL    L +    +  +  +++V   +AP HL     +E    AK +I +  
Sbjct: 147 EPISLAVLELSSYQLED----SSPLDLNVSVFLNLAPDHLERHETMENYFRAKLKIADLQ 202

Query: 218 EKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               ++ +       E ++ K  +       + SFG++  ++  L +       S     
Sbjct: 203 NPNHSLIV------SEKIREKILNSTSVQCKLLSFGRATTSEAILDESSSEIRTSKFIYD 256

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +         +  G H  +N+   +     +    ++    +  F    G   R++ A  
Sbjct: 257 I------SRFYLPGTHNRENLAAAILASEAIGGKPESIQAQIPFFM---GLPHRFQIAGE 307

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +   + I++S + N  SM A +S    +      R   +LG   +  E  +  +  L   
Sbjct: 308 KRGISFINDSKSTNLHSMLAGMSAWKNLD-----RTCLILGGRPK-QEDPKPLYDFL--- 358

Query: 396 LSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSS 440
             +  I  V L G      +  +       +   E +D  F   +  
Sbjct: 359 --MRGIGCVVLIGEARSVWEKGIRNVIGEKLFSVENLDEAFKIFKKW 403


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 122/366 (33%), Gaps = 43/366 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTL 153
           L++    A L  ++T I I+GS GKTTT  ++       K      +G  N+      +L
Sbjct: 91  LHRSQCLAMLMEESTKILISGSHGKTTTTSLIIAIFQEAKNDPSYAVGGLNSE-----SL 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAE 212
                     I E   S      +      P +AV+T +   HL +     E++  A  E
Sbjct: 146 NGHAGSSSIFIAEADESDGSLKHY-----APDVAVVTNLDEEHLVNYDDDPEKLLKAMQE 200

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +  +  +F N D    +         G  +  ++G S +   Q+  + Q   QS  
Sbjct: 201 FSNKVRDSQKVFYNGDCPQLK---------GEISGITYGFSPSCQLQVVSFYQREWQSSF 251

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                G   + +  +  G H   N     G+      ++    KAL  F    G  +R  
Sbjct: 252 SFIFCGIEYQNIELNLPGRHNVLNAAAACGVALTFGIEISVIRKALKKF---PGVQRRLE 308

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388
                  +  +++ Y  +P  +      L  +      RR+  +        L       
Sbjct: 309 QKNCSNKYLYLED-YAHHPVEIS---HTLQAVRDAVGLRRVIAIFQPHRFSRLQACLDLF 364

Query: 389 -HIDLAEVLSLYNISHVWLSGFHVLAL-------KDALPRSIHVHYSETMDGLFLFIQSS 440
            H    +      ++ V+ +G   + +       + AL   +   Y    D L  F++  
Sbjct: 365 PHAF--KDADEVILTDVYSAGEPFVEISMEQLSNQIALKSLVKCSYIP-FDQLVQFLKEK 421

Query: 441 LVDGDV 446
           +   DV
Sbjct: 422 IRVHDV 427


>gi|269964685|ref|ZP_06178923.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
 gi|269830584|gb|EEZ84805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
          Length = 452

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 148/411 (36%), Gaps = 35/411 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D       A     G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQAL----ADVFERGCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F    + D+Q    K   + S  +V LQ + +  V  + +G H   N LM +    
Sbjct: 236 TEKQFS-GVDGDWQAH--KLVLDGSKFDVALQDEKVGTVEWNLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPDLACQALGRFINTK---RRLELKGEEQGVTVYDD-FAHHPTAIELTVGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LAE  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAE--SLHSADEVFLFQPDNIEWSVQDIADQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
               + +  +D     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 403 TQPAFVDADIDNFVAKIVERARPGDQILVM-SNG-GFGGIHGKLLEQLKQK 451


>gi|170681037|ref|YP_001746635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
 gi|170518755|gb|ACB16933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
          Length = 457

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSACLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 478

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 130/360 (36%), Gaps = 36/360 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  + ++ VA  +      I ITG+ GKTT   +L+  L          G+    +    
Sbjct: 104 LKVIGEINVAWEILKDTNWIGITGTNGKTTVTHLLSHILCDTGLYAPFAGNIGTPL-CKY 162

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   + K 
Sbjct: 163 AYSKKTEKIDWVVAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKK 218

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQ 269
            +   LEK+     NYDD         S + G+    SF KS     D+ +       E+
Sbjct: 219 SL---LEKSDFRIYNYDDKNLRN-HYSSLSRGVWITTSFDKSNFIQCDYWIDDQAFIVER 274

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                +L+  S++      G H  QN+L+ +     +         +LS +        R
Sbjct: 275 GKKLFKLEHFSLK------GMHNLQNLLLVIAAARKVGLSGKEIKDSLSNYKQLP---HR 325

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      +I++S   N  S  A IS +       EG+ I + G   +  E S+   
Sbjct: 326 METIYKNDDLEIINDSKATNFDSSIAGISSI-------EGQIIIIAGGRLKGNEYSEW-- 376

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDV 446
                 +    +  V+L G     LK AL       ++     +  L  F+   L +  V
Sbjct: 377 ----IKVLKKKVKCVFLFGESSKVLKMALINEGFKKNIFEFSELKELLNFVFHYLQNNKV 432


>gi|312136986|ref|YP_004004323.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224705|gb|ADP77561.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 476

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/492 (16%), Positives = 170/492 (34%), Gaps = 73/492 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISI--DSRSIAPQEAFFAI----KGPHYDGHDFIL 58
               +L   + G  IG   +  V   +   D     P +         KG        + 
Sbjct: 1   MRLSELASYVSGKLIGEDKEIKVGIFNTLGD---ANPNDIVIRHWIDEKG--------VE 49

Query: 59  HAVQKGAGLVVVNTDMVASIG---SLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAI 113
            A  K    ++       S+     L +P+  V+  ++  A                + I
Sbjct: 50  IAKNKEVSALITQNPKGNSLEYAKKLKVPIILVNKIELASAFAIKWTIKNFAPNTYRVVI 109

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           TG+ GK+TT  M+   L+   K         S  N +  P+    +         E  + 
Sbjct: 110 TGTNGKSTTTHMIYHILTHAGKKAFTNTDAKSEFNTLIDPMVAKLLAEKAKKENLEYLVI 169

Query: 171 HLGEIR-FLTHLVRPHIAVIT-----------TIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            + E++ +L  L++ H  ++T            +A  H+   + IEE+    +   + LE
Sbjct: 170 EVSEVQGWLDRLMKDHAYLMTKSINPNVVVVTNVALDHIGLVNSIEEVFEETSGAVKALE 229

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K G   LNYD+ F   +   ++      ++ +GK+    F+       S   ++   L  
Sbjct: 230 K-GFAVLNYDNEFTRKMAKLTNK--NVKVFFYGKNCPVTFK-------SGGIYVNNDLFI 279

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K  E        +  QN L  +     L    D   K +  + P +   +R+     +  
Sbjct: 280 KKEE--LPFKSEYFIQNTLAAISACLCLNIPPDIIKKGILTYKPLK---RRFSILCKK-- 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVL- 396
             LI + +  NP  +K AI    +++ +   +   V       G++    + + L++ L 
Sbjct: 333 -PLIIDDFAHNPDGIKMAIKSAKKLTKN---KLWVVCAIRGSRGKIINKLNAESLSKTLK 388

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD----------GLFLFIQSSL---VD 443
           ++ N   V  +   V+   + + +     + +T++           L   ++ +L     
Sbjct: 389 NIENYEVVITNSDDVVDNLNKVKKEEEKTFLKTLEKYNINYRFHKKLKTALEETLTNCKK 448

Query: 444 GDVVVVKSSNSC 455
            D +++  +   
Sbjct: 449 DDTILLIGAQGM 460


>gi|253690076|ref|YP_003019266.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756654|gb|ACT14730.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 461

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 38/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +  +G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIILPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           +D   + +         + +      +   ++ +K     + S  +V L  + +  VH  
Sbjct: 222 NDLNLKQVMGMGCWSEQELV-----GEEGTWRAQKVSI--DASQYQVYLNNELVGEVHWK 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R      +   T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINAR---RRLELRGTEHGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +S L      G  R +AVL      M  +G         L          
Sbjct: 331 AHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMK-LGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLFQPAHIPWQVVEVAEACVQ--PAHWSADIDTLVENIVKTAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLE 466
             + N LL+
Sbjct: 439 SNIHNKLLD 447


>gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 449

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 135/375 (36%), Gaps = 43/375 (11%)

Query: 80  SLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++P+    V+  L  L ++ ++  L S+A II +TG+ GKTT   ++       + T 
Sbjct: 82  PYTVPLIEAAVEKGLTILTEVELSY-LISEAPIIGVTGTNGKTTVTSLIGDMFQKSRVTG 140

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+      V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL
Sbjct: 141 KLSGNIG---YVASKVAQEVTADDYLVTELSSFQLLGID----QYKPHIAIITNIYSAHL 193

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                ++   +AK +I++   +   +  N    + +    +S  L  KT Y F   +  D
Sbjct: 194 DYHETLDNYQNAKKQIYKNQTENDYLICN----YHQRHLIESETLRAKT-YYFSTQQEVD 248

Query: 258 -FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              ++      +     +  +           G H  +N+L  +    +    V   I +
Sbjct: 249 GIYVKDDYIVFKG--FRIIHKDD-----LVLPGEHNLENILAAVLAALLSGISVKAIIDS 301

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F    G   R +           ++S   N  + + A+    Q         I  L 
Sbjct: 302 LTSFS---GIEHRLQYIGTNKTNKYYNDSKATNTLATQFALDSFKQ--------PIIWLC 350

Query: 377 DMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
              + G        H+    ++  +  +           +K    +  +V  +  +    
Sbjct: 351 GGLDRGNDFDELIPHMKNVRMMVAFGETK-------EKFIKLGESQGKYVITANDVQDAV 403

Query: 435 LFIQSSLVDGDVVVV 449
             IQS +   DVV++
Sbjct: 404 DKIQSVIEPNDVVLL 418


>gi|167586016|ref|ZP_02378404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 175

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 313 AIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             + L  F P +GR + R   A +    T++D++YNANP SM+AAI VL+         R
Sbjct: 15  IRQGLEAFEPVKGRLQVRQAIAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP----R 70

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           + V+GDM E+G+   +FH ++        I  ++  G        +   +    +   + 
Sbjct: 71  VLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACASYGDTAR--HFGDVG 128

Query: 432 GLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
            L   +   L  G      V+VK S      R+++ L  +
Sbjct: 129 ALVDAL---LAAGYGARATVLVKGSRYMKMERVVDALTNQ 165


>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
 gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
          Length = 438

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A+I+AITGS GK+T   ++     +        G+        L+L + P      
Sbjct: 101 REAQASIVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---ALSLLKAPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTHSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQ---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD     ++            SFG        +  +    +Q  + ++ +G+ + 
Sbjct: 209 CVVNADDGMTMPVRGADA-----RCVSFGID------IGDYHLNKQQGSIWLRAKGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     T++ AL+ +    G   R++         
Sbjct: 258 NTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYS---GLPHRFQLVHQSRGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L        G    +LG   +  + S      LA  L    
Sbjct: 315 WINDSKATNVGSTEAALKGL-----QVNGTLWLLLGGDGKSADFSP-----LATYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G    AL  AL   + V  ++T+      I   +   D+V++
Sbjct: 365 I-RLYCFGRDGDALA-ALRPDVAVR-TDTLQQAMEQIARQVQPDDMVLL 410


>gi|253568797|ref|ZP_04846207.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 1_1_6]
 gi|251840816|gb|EES68897.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 1_1_6]
          Length = 467

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 137/379 (36%), Gaps = 39/379 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              +  + + G+ GKTTT  M       S  +  A +G  + + G  L L++        
Sbjct: 109 THSSKGLCVAGTHGKTTTSTMTAHLFHQSHIECTAFLGGISKNYGTNLLLSQKSPYT--- 165

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E       E     H + P+++VIT   P HL  +   +    +       ++  G +
Sbjct: 166 VIEA-----DEFDRSFHWLSPYMSVITATDPDHLDIYGTEKAYLESFEHYTTLIQPGGAL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +       + +  +        +Y++ + +  DF     +  + + +++       +  
Sbjct: 221 II------RKGISLQPKVQAGVRVYTYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINN 273

Query: 284 VHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  G+      +N + T+ +  +     +   + ++ F   +   +R+   +       +
Sbjct: 274 IQLGVPVSINIENGVATMALAHLNGVTDEEIRQGMNSFRGVD---RRFDFKIKNDQVVFL 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-------- 394
            + Y  +P+ +K ++  + ++  + + +  A+      +   ++ F+ D A+        
Sbjct: 331 SD-YAHHPSEIKQSVLSIREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEV 385

Query: 395 -VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            ++ +Y      + G     + D L   I     +  + +   ++   ++  V++   + 
Sbjct: 386 ILVDIYPARETPIPGVTSKLIYDNLRPGIEKSMCK-KEEILNILKDKNIE--VLITLGAG 442

Query: 454 SCGFYRLINLLLEEFPAIQ 472
                  +  + +E   ++
Sbjct: 443 DI--DNYVPEIKKELEKMK 459


>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
 gi|158512450|sp|A0M529|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
          Length = 445

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 110/345 (31%), Gaps = 34/345 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +I ITGS GKTT   ++   L          G+  N     +         D+ + EL 
Sbjct: 104 PVIGITGSNGKTTVTNLVQHLLKEGGINSGMGGNIGNSYAKMV----AEEMHDWFVLELS 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
              L  I       +PHIA++T I P HL  +   +E   ++K  I E   +      + 
Sbjct: 160 SFQLDGIEKF----KPHIAILTNITPDHLDRYDYKLENYIASKFRIAENQTEEDYFIYDA 215

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           DD        K+     K  +S  K     A  +          +   +           
Sbjct: 216 DDKNITDWLEKNPVRSQKLPFSIEKKIENGAYIENENIVVTINNTKFTMPT------SEL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A+N +    +  +L     T  ++++ F   E    R    L       I++S
Sbjct: 270 ALQGKHNAKNAMAASMVSQLLRIRKQTIRESMASFQGVE---HRLEKVLKINNVLYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +   +         +LG     G    + + DL  +++   +  + 
Sbjct: 327 KATNVNATFYALESMESETVW-------ILG-----GVDKGNVYDDLLPLVNE-KVKAII 373

Query: 406 LSGFHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             G     +  A    +      T M             GD V++
Sbjct: 374 CLGVDNEKIVSAFGNIVDTMVETTSMSEAVQMAYRLSDKGDNVLL 418


>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
 gi|189430348|gb|EDU99332.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
          Length = 444

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 119/352 (33%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQSLAYQV----AECNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDYKMQNYVDAKFRIIQNQTD 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD    +++ + H  GI    Y F + K              + +    ++ 
Sbjct: 208 NDAFIFWNDDP---VIQKELHKYGIHGHYYPFAEKKEEGLAAF---VEQNKVYFTKPIEF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      +I     +   +ALS F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANIAGIRKECIREALSDFKGVE---HRLEKVTRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A++ +         + + +LG     G+   + + ++A+++  
Sbjct: 319 VDYINDSKATNVNSCWYALNSMKT-------KTVLILG-----GKDKGNDYNEIADLVKE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++L G H   L D      + +   ++M             G+ V++
Sbjct: 367 KCSGLIFL-GLHNEKLHDFFDGFGLPIADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|150009085|ref|YP_001303828.1| UDP-N-acetylmuramate--L-alanine ligase [Parabacteroides distasonis
           ATCC 8503]
 gi|256841645|ref|ZP_05547151.1| UDP-N-acetylmuramate-alanine ligase [Parabacteroides sp. D13]
 gi|262383985|ref|ZP_06077121.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_33B]
 gi|298377160|ref|ZP_06987114.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_19]
 gi|301310863|ref|ZP_07216792.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 20_3]
 gi|189029015|sp|A6LEU2|MURC_PARD8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149937509|gb|ABR44206.1| UDP-N-acetylmuramate--alanine ligase [Parabacteroides distasonis
           ATCC 8503]
 gi|256736539|gb|EEU49867.1| UDP-N-acetylmuramate-alanine ligase [Parabacteroides sp. D13]
 gi|262294883|gb|EEY82815.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_33B]
 gi|298266144|gb|EFI07803.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_19]
 gi|300830926|gb|EFK61567.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 20_3]
          Length = 462

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 153/456 (33%), Gaps = 60/456 (13%)

Query: 43  FFAIKGPHYDG-----HDFILHAVQKGA------GLVVVNTDMVASIGSLSIPVFGVDDV 91
           F A KG    G      D      ++GA       + ++     +   +L +    V + 
Sbjct: 26  FLA-KGKRVGGYDKTPSDLTEELKKEGADIHYEDNVALIGEAFKSPDDTLVVYTPAVPES 84

Query: 92  LGALNKLAVAARL-RSKATIIA----------ITGSVGKTTTKEMLTIALSSIKKTYACI 140
              L            +A ++           + G+ GKTTT  ML   L        C 
Sbjct: 85  HTELTYFRAHGFEVMKRARVLGEITKSSRGLCVAGTHGKTTTSSMLAHLLKQS--PVDCN 142

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                 +    +   +    DF + E       E     H + P++AVIT+  P HL  +
Sbjct: 143 AFLGGILKNYESNLMLSDTSDFTVIEA-----DEFDRSFHWLTPYMAVITSADPDHLDIY 197

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E    +  +    +   G + +    +    L+      G+K  Y++  ++ ADF  
Sbjct: 198 GTAEAYRESFEKFTSLIRPDGCLLIKKGINVTPRLQE-----GVKK-YTYSVTEIADFYA 251

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              + C      +       +  V  G+      +N +  + I  +     +   K ++ 
Sbjct: 252 ENIRICDGNITFDFVGPEIRIPDVELGVPVKVNIENGVAAMAIAWLNGVKPEDLKKGMAT 311

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G  +R+   L      LID+ Y  +PA ++ +I  + ++     GR++  +    
Sbjct: 312 F---AGPRRRFDFHLKTDQVVLIDD-YAHHPAELRQSILSVKEL---YAGRKVTGIFQ-P 363

Query: 380 EMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            +   ++ F  D A          +L +Y      + G     + D +            
Sbjct: 364 HLYTRTRDFAGDFAASLSLLDELILLDIYPAREEPIPGVSSRIIFDKVTIPSKTLCK--K 421

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + L   + +     +VV++  + +    RL+  + E
Sbjct: 422 EELLDVVAA--GKYEVVLMVGAGNI--DRLVEPVKE 453


>gi|327441157|dbj|BAK17522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Solibacillus
           silvestris StLB046]
          Length = 450

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 133/415 (32%), Gaps = 51/415 (12%)

Query: 51  YDGHDFILHAVQKGAGLV-------VVNTDMVASIGSLSIPV---FGVDDVLGALNKLAV 100
           +D +      + KG  ++       +++      + +  IP       D +   L  +  
Sbjct: 43  FDANSEAQELLSKGITVICGRHPEDLLDEGFELVVKNPGIPYTNPIVADAIAKGLPVITE 102

Query: 101 --AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
              A L S+A  I ITGS GKTTT  +L   L   +      G+      V   +A    
Sbjct: 103 IELAYLVSEAPFIGITGSNGKTTTTTLLFEMLKVGRLKPLIAGNIGT---VACGVAAEAK 159

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  + EL    L      T   RPHIA++T +  AHL      EE A AK  +     
Sbjct: 160 ADEVIVTELSSFQLMG----TREFRPHIAILTNLYEAHLDYHGTFEEYAEAKFGVTRNQT 215

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  N D         KS A     +  F    +A+          E     +  QG
Sbjct: 216 ADDYFIYNADQEVVAKYAQKSKA----KLIPFTTKGHAN---EGISADKEN----IYWQG 264

Query: 279 KSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            ++         G H  +N+L  +    +    V+       V     G   R +     
Sbjct: 265 DAILKRDNIVLPGEHNLENILCAVAAALLQQCPVEAI---EEVLGTFAGVRHRTQFVREW 321

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               + ++S   N  + K+A++   Q         I +L    + G   +    ++    
Sbjct: 322 QGRKIYNDSKATNVLATKSALAAFEQ--------PIVLLAGGLDRGHSFEELRKEMTR-- 371

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
               +  V   G   L   +        +      ++    +      +GD++++
Sbjct: 372 ----VKAVVAFGETALRFIEFAKSCGITNIVRAIDVEDAVGYGAKMSEEGDIILL 422


>gi|269960901|ref|ZP_06175271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
 gi|269834341|gb|EEZ88430.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
          Length = 452

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 148/410 (36%), Gaps = 33/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D   + +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQSLQDVIER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           T   F    + D+Q    K   + S  EV LQG+ + VV    +G H   N LM +    
Sbjct: 236 TEKQFS-GVDGDWQAH--KLVVDGSKFEVSLQGEKVGVVDWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVAPELACQALGRFINTK---RRLELKGEELGVTVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
             GE R +AVL        + +  H +     SL++   V+L     +  ++++   +  
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTL-AASLHSADEVFLFQPDNIDWSVQEIADQCK 403

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
              + +  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 404 QPAFVDAEMDSFVAKIVEQAQPGDQILVM-SNG-GFGGIHGKLLEQLKQK 451


>gi|15892483|ref|NP_360197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           conorii str. Malish 7]
 gi|30316098|sp|Q92I60|MURD_RICCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15619640|gb|AAL03098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia conorii
           str. Malish 7]
          Length = 500

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 129/409 (31%), Gaps = 83/409 (20%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++V    S +IP+    D+L A                IAITG+ GK+TT  +++  L+
Sbjct: 77  HEIVNIAKSFNIPITSDIDLLFA---------KSKNLKFIAITGTNGKSTTTALISHILN 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S    Y   G+        ++  +     D  + EL    L  ++  T      IAV+  
Sbjct: 128 SSGLDYPVAGNIG------VSALQAKASKDGYVLELSSFQLDLVKTFTA----KIAVLLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL     +    +AK++IF+ +++     +N D+ +   +  K        +  F 
Sbjct: 178 ITPDHLDRHQDMTCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFS 237

Query: 252 KSK--NADFQLRKWKQCS---EQSWMEVQLQGKSM------------------------- 281
            ++       +   K  +   +    E+Q   +S                          
Sbjct: 238 VAQILENGISVVDDKISANFCDDISFELQHNSESFRQDEFQGEPAEPECIKIREHRQDLQ 297

Query: 282 ------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                           +  G H  +N+  +  +  I+  +    ++++S F        R
Sbjct: 298 NSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLP---HR 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   +    +  ++S   N  S   +I  L  I     G          E G       
Sbjct: 355 MQYIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGI-------PKEGG------- 400

Query: 390 IDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
               E +  Y  +I   +  G       +     +     + ++  F  
Sbjct: 401 ---IEEIKPYFSHIKKAYFYGQAKEIFANTAKNIVDFVICDNLEQAFDL 446


>gi|169334709|ref|ZP_02861902.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257447|gb|EDS71413.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
          Length = 408

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 139/387 (35%), Gaps = 48/387 (12%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIAL-----SSIKKTYACIGSYNNHIGVPLTLA 154
             +    K  +I +TG+ GK+TT   +   L     S  K +   I + + + G  L+ +
Sbjct: 2   FYSDKTEKLKLIGVTGTKGKSTTSFFIKNILDLYLKSKGKMSSGIISTIDTYDGSELSES 61

Query: 155 -----------RMPVDVDFGIFELGMSHLGEIRF---LTHLVRPHIAVITTIAPAHLSN- 199
                      ++  +      E  +  +  I +     +    ++ V   I   H+S+ 
Sbjct: 62  LLTTPESLEFYKLLNNAVNNELEYFVCEISSIAYKYSRVYGANFNVGVFLNIGYDHISDV 121

Query: 200 -FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                ++  S+K ++ E  E    I +N D   ++ +    +      I++F     AD+
Sbjct: 122 EHKDFDDYFSSKIKLLENSE---YIVINKDLLRYDEINEVLNNKEKDKIFTFSIDDKADY 178

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +    K+ +  +  ++   G+         G +  +N +  + +  IL  D     K + 
Sbjct: 179 KAMNIKRKNRFTSFDLVHNGELKNYNLLMSGLYNVENAIAAIIVCEILCIDYKYIFKGI- 237

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGD 377
           +    +GRG+ Y+     G  TLI + Y  N  S+K        +    +G++ I ++G 
Sbjct: 238 LGSAVKGRGEIYKTK--DGKKTLIVD-YAHNELSLK---RYFEFVKDEFKGKKHICIIGA 291

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPRSIHVHYSE 428
               G  + +   ++   L   N   + L+               +   +P+   +   E
Sbjct: 292 P---GGKALNRRKEIG-TLCYKNCDEIILTSDDPFYESFDNICSEIMSFIPKYKKIRVIE 347

Query: 429 TMDGLFLFIQSSLVDGDV---VVVKSS 452
                     +S  + +    ++ K S
Sbjct: 348 NRTEAIKEAVNSYKNEETIISILGKGS 374


>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
 gi|189438327|gb|EDV07312.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
          Length = 444

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 120/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----ATDQH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYDHCMQNYVDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG 278
                   DD   +    K         +S  K   A   +   + + +E     ++   
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGLRAHLYPFSAVKEDGAIAYVEDGEVEINEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++   + +   +ALS F   E    R         
Sbjct: 264 ---QEKLALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVE---HRLEKVATVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + + +LG     G+   + + ++ +++  
Sbjct: 318 VEFINDSKATNVNSCWYALQSMKT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L D   R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLL 417


>gi|315122417|ref|YP_004062906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495819|gb|ADR52418.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 468

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 122/345 (35%), Gaps = 42/345 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
              +  IA+TG+ GK++T  +++  L+         G+  N I              F +
Sbjct: 110 TFHSPFIAVTGTNGKSSTVMLISHILNQNGYDVQLGGNIGNPILN----LADFSSHRFYV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     +     LT  + P I V+  ++  HL   + +E  A  K ++     K+    
Sbjct: 166 IECSSYQID----LTPTIDPSIGVLLNVSIDHLDRHNTLENYARIKKKLVA---KSQHAV 218

Query: 225 LNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  +D   + + +   +    +  I S     ++DF +       + S ++     K++ 
Sbjct: 219 ICMNDDLCKTVASDMATAGHSMTRISSQPMPSDSDFYI-------DGSHIKCSSTSKTIF 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +      +   N+  ++ +   L   +D   +A+S F    G   R +     G    I
Sbjct: 272 ALSQEDRRYNMHNVAASIAVCMRLGLKIDEIKRAISSF---NGLTHRLQKIAQLGQVIFI 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S+  A           E R I  +G     G LS+S    +     L  ++
Sbjct: 329 NDSKATNLHSVMHAF--------LNEKRVIYWIG-----GGLSKSDDFSIIFPF-LSKVA 374

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +  G         L   +     +T+D     + S +   DVV
Sbjct: 375 KAYFIGDSATIFAHHLREKVECDVFQTLDQA---LTSVVR--DVV 414


>gi|308389287|gb|ADO31607.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D- glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis alpha710]
          Length = 458

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +         + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RIGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|150026094|ref|YP_001296920.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|189028989|sp|A6H194|MURC_FLAPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149772635|emb|CAL44118.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 448

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 140/384 (36%), Gaps = 50/384 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLAR 155
           +  V   +      +A+ G+ GKTTT  +L   L        A IG    +    L    
Sbjct: 100 RAEVLGIITKDTFCLAVAGTHGKTTTSSILGHILYESGADVTAFIGGIVENYNSNL---- 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +       + E        +      + P+IA +T++   HL  +     I ++  E  +
Sbjct: 156 IGSGKTVTVVEADEFDRSFLH-----LYPNIACVTSMDADHLDIYGDDAAIKASFKEFAD 210

Query: 216 GLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            +E K     +N               L +K I + G + ++ F     +  +     +V
Sbjct: 211 KVEDKNKLFVING--------------LPLKGI-TVGANDDSQFVAHNIRIENGWYIFDV 255

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   +++ ++     G H   N L+ L +        ++  KAL+ F   +   +R+   
Sbjct: 256 KTPTENIKDLKFGLPGKHNLTNALLALAMARTFGTPTESIAKALASFKGVK---RRFSFQ 312

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + +  F  ID+ Y  +P  + A    + ++ P+   + +AV      +   ++ F  D A
Sbjct: 313 IRKPKFVYIDD-YAHHPTEINAVHQAVRELYPNE--KVLAVF--QPHLFSRTKDFANDFA 367

Query: 394 E---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +         +L +Y    + + G +   L D +         +    L   ++ S  D 
Sbjct: 368 KSLSQFDEILLLDIYPARELPIEGINSGWLLDKVENKNKKLVHKN--ELIPLLKKS--DA 423

Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468
            V+V   +   G   ++N + +E 
Sbjct: 424 TVIVTIGAGDIG-EMVVN-IKKEL 445


>gi|91228512|ref|ZP_01262434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
 gi|91187946|gb|EAS74256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
          Length = 437

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 125/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  +IAITGS GK+T  ++  +  ++        G+          L  +  D D  + E
Sbjct: 107 QKPVIAITGSNGKSTVTDLTGVMANAAGLDVGVGGNIGVP-----ALDLLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF          +N
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH---AALAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++       + +FG S N DF     +    ++W+    Q         
Sbjct: 215 RDD-------QETFPDAEMPLVTFG-SDNQDF---GLEVDGNRTWLLDHGQRVVASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     +   A+   +      G   R +   +      +++S 
Sbjct: 264 LVGKHNLSNALVALALLKAADVNYHKAL---NTLKNYTGLTHRCQVVADNQGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + S      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFSP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       + +P        +TM+ +   + S L  GD+V++
Sbjct: 370 FGADGD---EFMPLHESAIRFDTMEDVIQQVSSQLKPGDMVML 409


>gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus
           polymyxa SC2]
 gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa SC2]
          Length = 473

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA II ITGS GKTTT   +   L +        G+    +      A+     ++ + E
Sbjct: 111 KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAGNIGTPLCEAAVDAK---SDEWMVVE 167

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T   +P +A +  +A  HL    G+E+  ++KA +F     + T  +N
Sbjct: 168 LSSFQLKG----TKDFKPAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVVN 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN--AD-FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +DDS    L     A  +    +    +   AD   +       E++ +     G    +
Sbjct: 224 WDDSVCRELVPYIQAKLLPFSMTERLQEGLFADPPYIPDVTDDIERNIVYRDGNGVLHPI 283

Query: 284 V----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +        G    +N L    I     A+     + L  F   E    R    L  G  
Sbjct: 284 IGVTDIGLPGRFNVENALAACAIAIAAGAEPAKLAEPLGSFRGVE---HRLEYVLEHGGV 340

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S   N  +   A+S   Q         + + G     G    S + +L   L   
Sbjct: 341 AYYNNSKATNSKATMMALSSFKQ-------PIVLIAG-----GLDRGSDYAELVPSLQE- 387

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVD-------GDVVVV 449
            +  V L G     L D   ++   HV   +  +     +  ++         GDVV++
Sbjct: 388 GVKAVVLLGETRHKLADRARQAGIEHVKVVDNGEDAAATLVEAVNKAAQFAETGDVVLL 446


>gi|261377827|ref|ZP_05982400.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria cinerea ATCC 14685]
 gi|269146129|gb|EEZ72547.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria cinerea ATCC 14685]
          Length = 458

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 124/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSKSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +      V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEANADGSFGVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWDLMGGHNRMNALAVIAAARHAGIDIQTACEALSAFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAALPE------ 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL +   V+    G      +   P    +H S+  D     I      GD ++V  SN 
Sbjct: 386 SLKDADQVFCYAGGVDWNVAEALAPLGGKLHVSKDFDAFVAEIVKHTEAGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 445 -GFGGIHGKLLEALR 458


>gi|148238364|ref|YP_001223751.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH 7803]
 gi|189082507|sp|A5GHN9|MURC_SYNPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147846903|emb|CAK22454.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH 7803]
          Length = 486

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 142/413 (34%), Gaps = 56/413 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     + V+   D+L AL           +   IAI GS GKTTT  +
Sbjct: 85  SAIPDHNPELVAARERQLEVWHRSDLLAALID---------QQPSIAIAGSHGKTTTSTV 135

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +T  L    +   A IG             +        + E   S    ++F   L   
Sbjct: 136 VTTLLHGAGEDPTAVIGGIVPCYDSNGHAGQG----RLLVAEADESDGSLVKFRASL--- 188

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243
              VIT +   H  ++  ++++ +      +G ++   +  N DD    E  +A +    
Sbjct: 189 --GVITNLELDHTDHYRDLDDLIATLQRFGDGCKR---LLANQDDPILSEHFQADAW--- 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
               +S  +S N DF         +++  ++  QG  + ++     G H   N +  L  
Sbjct: 241 ----WSVQRSDNVDFAGLPVALEGDRTIADLYEQGTFVGQITLPMPGLHNLSNTIGALAA 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++  I  LS        G+R+    +     ++D+ Y  +P+ + A +++ + 
Sbjct: 297 CRMEGVPLEHLISHLSELKTP---GRRFDYRGDWQGRQIVDD-YAHHPSEVAATLNMANL 352

Query: 363 IS-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY---------NISHVWL 406
           +        P    R +AV          +Q F  + A  L                  +
Sbjct: 353 MVSSGRSPLPRSPQRLVAVF--QPHRYSRTQEFQTEFARALLSAELVLLAPIFAAGEAEM 410

Query: 407 SGFHVLALK---DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            G +  AL      L     V  + TMD L   ++   +  D+V+   +    
Sbjct: 411 PGVNSEALASVMQELSTQQSVLVASTMDELVSLVKEHSLPDDLVLAMGAGDVN 463


>gi|317496100|ref|ZP_07954460.1| UDP-N-acetylmuramate-alanine ligase [Gemella moribillum M424]
 gi|316913675|gb|EFV35161.1| UDP-N-acetylmuramate-alanine ligase [Gemella moribillum M424]
          Length = 435

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 131/377 (34%), Gaps = 51/377 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L          +L  +   IA+TG+ GKTTT  M +      + T   IG    H     
Sbjct: 85  LKIYTYAQFLGKLLEETPSIAVTGAHGKTTTTTMTSNIFKHNRVTSYLIGDGTGH----- 139

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  + DF I E    +   + +      P  A++T I   H   F+   ++  A  
Sbjct: 140 ----GEKNSDFMIAEACEYYRHFLAY-----HPDYAIVTNIDFDHPDYFNDEYDMFDAFQ 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                ++   T+ +  DD     L +K      KTI ++G +   D+Q++  +  +E S 
Sbjct: 191 SFVNQVKN--TVVICGDD----RLASKLKPAHAKTI-TYGFNDGNDYQIKNVQTSTEYSK 243

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            ++      +        G H   N    + +  I    V+   ++L ++ P E R   Y
Sbjct: 244 FDIYKNNTLLGTFTMAIFGLHDISNATSAIALADINGISVEKIQESLDLYRPAERRFSEY 303

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + + N     ++ + Y  +P+ +KA I        +   + +A+          +  F  
Sbjct: 304 KFSSN-----VVVDDYAHHPSEIKATIDSAR--RKYAGKQIVAIF--QPHTYTRTAKFLN 354

Query: 391 DLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           + AE L       V+L               +  L+   P S  +H  E  D L      
Sbjct: 355 EFAESLLT--ADKVFLCPIFASVREKEKIVGIEDLQKVTPGSKIIHGEEDFDKLN----- 407

Query: 440 SLVDGDVVVVKSSNSCG 456
              +  V +   + +  
Sbjct: 408 --FENTVFLFMGAGNIN 422


>gi|284048640|ref|YP_003398979.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952861|gb|ADB47664.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
          Length = 473

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 97/320 (30%), Gaps = 35/320 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K    A+TGS GKTTT  +L   L+++    A  G+      +   L  +  D      
Sbjct: 121 YKGHWCAVTGSNGKTTTTTLLGEMLATLPVKTAVAGNIGF--ALSKELQDLDQDSWVAA- 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  + P +A I  I P H      +    +AK++IF        + L
Sbjct: 178 ELSSFQLEG----TTSLAPDVACIVNITPDHFERHGDMAGYVAAKSKIFAFQTPDQILIL 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           N DD     L  K+ +     +  F   K     +       E  W  + L GK   +  
Sbjct: 234 NADDPVSSKLGDKARS----RVIWFSTEK-----VLPEGGFIEDGWFTLALDGKKERICQ 284

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  Q++L             +   + L  F   E    R            
Sbjct: 285 VSDLQIFGAHNEQDVLAACLSAHFAGVTAENMARVLKAFRGVE---HRLEYVTAINGVKY 341

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S   A+          +G  I + G   +M  L                 
Sbjct: 342 YNDSKATNTDSAIKALEAFK------DGHVILLAGGHDKMTGLDDLM------EAVKAKT 389

Query: 402 SHVWLSGFHVLALKDALPRS 421
             + L G       +A  + 
Sbjct: 390 DALILLGEARQRFCEAAKKH 409


>gi|88801285|ref|ZP_01116813.1| UDP-N-acetylmuramate--L-alanine ligase [Polaribacter irgensii 23-P]
 gi|88781943|gb|EAR13120.1| UDP-N-acetylmuramate--L-alanine ligase [Polaribacter irgensii 23-P]
          Length = 450

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 138/394 (35%), Gaps = 62/394 (15%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
               +  +  ++      +A+ G+ GKTTT  +L   +       A   S+   I     
Sbjct: 97  AVFKRAEILGKITESTFCLAVAGTHGKTTTSAILGHIM-----VTANATSFLGGIAENYN 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +       + E        ++     + P+IA +T++   HL  +   E + ++  E
Sbjct: 152 ANLILGGDTISVVEADEFDRSFLQ-----LSPNIACVTSMDADHLDIYENPEALTASFIE 206

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               + +T             L+ AK   L      ++  ++ AD++    +  S     
Sbjct: 207 FASRVTQT-------------LIVAKGLPLKG---LTYAINEPADYRAFNLRIESGTCLF 250

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           ++      +E +     G H   N L  + +  +    ++   K L  F   +G  +R+ 
Sbjct: 251 DIATPSSIIEKISFDVPGRHNIMNALAAIAMADVYGISLENIKKCLETF---KGVARRFS 307

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +    F LID+ Y  +P ++ A  S + ++ P  E   I V+     +   ++ F  D
Sbjct: 308 YKIKTENFVLIDD-YAHHPTAIYAVESSVREMYPDAE---ILVVFQ-PHLYSRTRDFIDD 362

Query: 392 LA---------EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-- 440
            A          +L +Y    + + G     L   +            + L   I++S  
Sbjct: 363 FALALNKFDAILLLDIYPAREIPIPGVDSSWLLSKIENPHKK--LTQKNNLLKDIKNSSA 420

Query: 441 -----LVDGDV-VVVKSSNSCGFYRLINLLLEEF 468
                L  GD+ V+V          + N LL+E 
Sbjct: 421 KVVVMLGAGDIGVLV--------DEVSNELLKEL 446


>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
 gi|154086278|gb|EDN85323.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
          Length = 453

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 115/354 (32%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  +    L          G+  N + + +         
Sbjct: 104 FAGRYTDAKMICITGSNGKTTTTMLTYHILRQAGVDAGLAGNVGNSLALQV----AEDPH 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L  +    +  +  IA++  I P HL  ++  ++    AK  I      
Sbjct: 160 AVYVIELSSFQLDNM----YDFKADIAILLNITPDHLDRYNYEMQNYVDAKFRIIRNQTA 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD       AK H     T+Y F ++  A       K  +E   + ++    
Sbjct: 216 EDAFIFWNDDPIIAREIAKRHPQA--TLYPFAETHEA-----GVKGYTEDKKIIIETSNG 268

Query: 280 SM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +    E +    G H   N L +     ++    +    +LS F   E    R       
Sbjct: 269 TFTMEEDLLALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTGVE---HRLEKVARV 325

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  ++          + +LG     G    + + ++ E L
Sbjct: 326 RGVDYINDSKATNVNSCWYALQSMTT-------PLVLILG-----GTDKGNDYSEI-EEL 372

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     L       + V   + +M+            GD V++
Sbjct: 373 VKKKVHALIFLGVDNAKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDTVLL 426


>gi|308188236|ref|YP_003932367.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
 gi|308058746|gb|ADO10918.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
          Length = 454

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 143/408 (35%), Gaps = 30/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M   
Sbjct: 68  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMAAW 127

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E            +  V   P 
Sbjct: 128 ILEACGLEPGFIIGGVPGNFDVSAKLGKSP----FFVIEADEYDCAFFDKRSKFVHYSPR 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I L   D   + + A       +
Sbjct: 184 TLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILLPEHDPNLKQVMAMGCWSEQE 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           ++      ++  +Q +  K  ++ S  E+ L G+ + EV    +G H   N LM +    
Sbjct: 244 SV-----GEHGRWQAK--KLTNDASHWEIWLDGEKVGEVKWALVGEHNMHNGLMAIAAAR 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 297 HVGVKPEDAGQALNTFINAR---RRLELRGEVNNIKVYDD-FAHHPTAILATLAALRS-K 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFH--VLALKDALPRS 421
             G  R +AVL    E    +    +   ++  SL     V+L   H     + D     
Sbjct: 352 VGGRARILAVL----EPRSNTMKMGVSKNDLAPSLARADEVFLFQPHHIPWQVSDVAEAC 407

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           I   H+S  +D L   +  +   GD ++V  SN  GF  +   LL+  
Sbjct: 408 IPPAHWSADIDTLVEMVAKAAQPGDTILVM-SNG-GFGGIHQKLLDRL 453


>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
 gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
          Length = 448

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 132/346 (38%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AI+GS  K+T   ++     +  K  A  G+          L  +  +V+  
Sbjct: 105 RHAKAPIVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALDLLSDEVELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      TH +   +A +  ++  H+  +SG+     AK  IF G ++    
Sbjct: 160 VMELSSFQL----ETTHDLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQ---F 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L  +         ++FG  K  DF+    ++ + + ++  + Q      
Sbjct: 213 VVNRQDALSRPLIGEGM-----PCWTFGLGK-PDFKAFGIREENGEKYLAFEFQNLMPVR 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +    D  + +L  F   E R +  R   +    +  +
Sbjct: 267 ELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRAFGGLEHRCQWVR---DLDGVSYYN 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G   +     +AE         
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLIAGGDGK-GADFKDLKAPVAEHCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++    + ++D      ++    GD V++
Sbjct: 375 VVLMGRDADLIAAALGDAVPQVRATSLDDAIAQCKALAQPGDAVLL 420


>gi|254292767|ref|YP_003058790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hirschia
           baltica ATCC 49814]
 gi|254041298|gb|ACT58093.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hirschia baltica
           ATCC 49814]
          Length = 474

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 101/290 (34%), Gaps = 18/290 (6%)

Query: 83  IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +PV G  ++   A+ +L   AR      I+ ITG+ GK+TT  ++   L    +     G
Sbjct: 94  VPVVGDMELFARAVAELPAYAR----PKIVGITGTNGKSTTTALIGHILERAGRDVRVGG 149

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +    +   L L  M  +  + + EL    L  I  L    R  +AV   ++P HL    
Sbjct: 150 NIGVGV---LDLKAMNANSIY-VLELSSYQLDLIDSL----RCDVAVFLNVSPDHLDRHG 201

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G++   +AK  IF       T  +  DD   ++L  +  A   + +     ++ A  +  
Sbjct: 202 GMQGYVAAKNRIFRNQTSADTAVIGVDDMRTQILCTRLAAENTRRVCPVS-AEMALGRGV 260

Query: 262 KWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +      +    +    +       G H  QN          L  D    I  L+ F
Sbjct: 261 SVLEGMLSDSLSGHAETSVDLSSARALPGQHNHQNAAAAYAACQSLGLDASEIIDGLNSF 320

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               G   R     +      +++S   N  + + A+           GR
Sbjct: 321 ---PGLEHRLESVGSVNGVAFVNDSKATNSQAAEQALRAYPNAFWIAGGR 367


>gi|261823018|ref|YP_003261124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium wasabiae WPP163]
 gi|261607031|gb|ACX89517.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           wasabiae WPP163]
          Length = 438

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 127/347 (36%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +       
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-----ALQLLEQPAQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH---ADL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V  +     
Sbjct: 209 CVVNADDALTMPIRG-----ADVRCRSFGVDVG-DYHLNRQQ---GETWLRVNGERVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +   + +A+ AL+ F    G   R++ A  +     I
Sbjct: 260 REIKLVGQHNYTNALAALALADAVKIPLASALTALTAFT---GLPHRFQMAFERDGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L+      +G    +LG   +  + S      L        I 
Sbjct: 317 NDSKATNVGSTEAALSGLT-----VDGTLHLLLGGDGKSADFSP-----LVPYFQGERI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 366 RLYCFGRDAAQLAALRPE--IAEQTETMEQAMRVIAERIKPGDMVLL 410


>gi|300821335|ref|ZP_07101483.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
 gi|300526224|gb|EFK47293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
          Length = 440

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 47  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 106

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 107 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 163

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 164 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 223

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 224 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 276

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 277 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 331

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 332 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPTHIPWQVAEVAE 384

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 385 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 440


>gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
 gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 150/458 (32%), Gaps = 86/458 (18%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +P      +S +S       AF  +   +     ++  A   GA  ++   D+    G 
Sbjct: 4   ELPNQEYKYVSENSSECGADTAFV-LSAQNK---KYLQDAKDNGAHSIINIKDIAELFGI 59

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             I                          I+ ITG+ GKTTT   +   L  +    A  
Sbjct: 60  DKI-------------------------KIVGITGTNGKTTTASAIYSFLLDLGYKTAMQ 94

Query: 141 GS----YNNHIGVPLTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           G+     N+ +    +L               +    +F I E+    + + R     ++
Sbjct: 95  GTRGFFMNDEVIEGKSLTTPSVLNTYKHIYQAVESGCEFFIMEVSSHAIAQERI--EGLK 152

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + ++T I   HL     I E  + K   F+     G   +N D+           A  
Sbjct: 153 FELKILTNITQDHLDYHKTIGEYIAVKNSFFQ---DEGKKLINKDEPRS--------AFN 201

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           IK  +++G    A ++L  +   +  S + +Q   + +       G+    N++  +G V
Sbjct: 202 IKNTFTYGIENPASYKLMAYSLNNASSGI-IQHFKEVVPFTSSLHGFFNLYNLMAAIGAV 260

Query: 304 SIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +L    ++  ++ +  F    GR ++     N      +   +   P  M+  ++ L +
Sbjct: 261 DLLVDEKLEKIVEVVDNFAGVSGRMEQVCELPN------VIVDFAHTPDGMQQVLNALKE 314

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
                    + V G   +  +  +     +A  L+      V+++          A+ D 
Sbjct: 315 ------KELLVVFGAGGDRDKQKRPLMGRVAASLAK----KVYITSDNPRNEDPQAIVDD 364

Query: 418 LPRSIHVHYSETMD----GLFLFIQSSLVDGDVVVVKS 451
           +   I      +++               +G+VVV+  
Sbjct: 365 ILEGIEDRSIVSVELNRKKAIEMALDDQGEGEVVVILG 402


>gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
 gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
          Length = 432

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 128/417 (30%), Gaps = 82/417 (19%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           ++ +S        F          +  F   AV+KGA L+                    
Sbjct: 10  VTDNSNECERGCFFV-----QTHANSKFSQDAVKKGAKLIG------------------- 45

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                 L +      +     I+ ITG+ GKTTT   +   L  +    A  G+    I 
Sbjct: 46  ------LEECKKILNIDENIKIVGITGTNGKTTTAAAIYETLRELGHKCALSGTRGAFIE 99

Query: 149 VPL-------------TLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITT 191
                           TL  +      G    I E+    + + R     ++  + + T 
Sbjct: 100 GERIDEKALTTSAILQTLGYLKAASQRGCKYFIMEVSSHAIDQKRI--ESLKFALKIFTN 157

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     ++E A  K+  FE         +N DD   +           K  Y++ 
Sbjct: 158 LTQDHLDYHKSMQEYARVKSSFFE---DDSLKLINIDDGGIKF--------NPKNAYTYS 206

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             K A F    +          ++     +++     G     N++  LG V +L    +
Sbjct: 207 LKKPASFAPVAYGLKG-GIDAVIKTPNGDVQIDSPLQGEFNLYNLIAALGAVYLLAKPEN 265

Query: 312 TAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           + + KA+S F   +GR +            L+   +   P  ++  ++ L  ++      
Sbjct: 266 SKLSKAISKFSGVDGRVEVVSSE------PLVIVDFAHTPDGIEKVLNALRHLN------ 313

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH 423
            I + G     G+   +    +  +   Y    +  S         A+ D +   + 
Sbjct: 314 LIVIFGA---GGDRDNTKRPKMGAIAQRYAQICIVTSDNPRSEEPEAIIDEICAGMR 367


>gi|255065972|ref|ZP_05317827.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sicca ATCC 29256]
 gi|255049883|gb|EET45347.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sicca ATCC 29256]
          Length = 472

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 124/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 121 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSKSPFF 180

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 181 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 241 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEVNADGSFDVLLDGKKA 292

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA  ALS F   +   +R          T
Sbjct: 293 GHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACAALSAFKNVK---RRMEIKGTVNGIT 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 350 VYDD-FAHHPTAIETTIEGLRQ--RIGNARILAVLEPRSNTMK-LGTMKAALPE------ 399

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL +   V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 400 SLRDADQVFCYAGGVDWNVAEALEPLGSKLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 458

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 459 -GFGGIHGKLLEALK 472


>gi|153809194|ref|ZP_01961862.1| hypothetical protein BACCAC_03505 [Bacteroides caccae ATCC 43185]
 gi|149128170|gb|EDM19390.1| hypothetical protein BACCAC_03505 [Bacteroides caccae ATCC 43185]
          Length = 458

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/410 (13%), Positives = 145/410 (35%), Gaps = 44/410 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +VV T  V         V+  ++      +  V   +   +  + + 
Sbjct: 61  DLIPEACKDKESTLVVFTPAVPQEHEEL--VYFRNNGFEIQKRAQVLGTITHSSKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    L     +  A +G  + + G  L L++        + E       
Sbjct: 119 GTHGKTTTSTMTAHLLHQSHVECTAFLGGISKNYGTNLLLSQKSPYT---VIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P+++VIT   P HL  +   +    +       ++  G + +       +
Sbjct: 171 EFDRSFHWLSPYMSVITATDPDHLDIYGTEQAYLESFEHYTTLIQPGGALII------RK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HM 292
            +  +        +Y++ + +  DF     +  + + +++       +  +  GI     
Sbjct: 225 GISLQPKVQPGVRVYNYSRDEG-DFHAENIRIGNGEIFIDFVAPDTRINDIQLGIPVSIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +   K ++ F   +   +R+   +       + + Y  +P+ 
Sbjct: 284 IENGVAAMALAHLNGVTDEEIKKGMASFRGVD---RRFDFKIKNDRVVFLSD-YAHHPSE 339

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISH 403
           +K ++  + ++  + + +  A+      +   ++ F+ D A+         ++ +Y    
Sbjct: 340 IKQSVLSMREL--YKDKKITAIF--QPHLYTRTRDFYQDFADSLSLLDEVILVDIYPARE 395

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
             + G     + D L   I     +  + +   ++        +L  GD+
Sbjct: 396 APIPGITSKLIYDNLRPGIEKSMCK-KEDILNILKDKNIEVLITLGAGDI 444


>gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 444

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A+  + A +I ITGS GKTTT  ++   L S        G+        +       + 
Sbjct: 95  FAKRYTTAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIGRSFARQV----AEENY 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  +  IA++  I P HL  +   I++   AK  I +   +
Sbjct: 151 DYYVLELSSFQLENM----YSFKADIAILLNITPDHLDRYDHDIQKYIDAKMRIVQNQTE 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   +D        K  + G +  Y+F     A+ ++           +++     
Sbjct: 207 ADAFIFWEEDPIVSKEIKKLVSKGKQ--YTF-----AEHKVGNAIAYLNDHEIDINTPNS 259

Query: 280 SM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +    + +    G H   N L +     +L    D    +LS F   E    R       
Sbjct: 260 AFIMEQDLLALEGTHNLYNSLASGIAAKLLDITDDNLRHSLSDFQGVE---HRLEKVAKV 316

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  +         + + +LG     G    + + ++ E L
Sbjct: 317 KGIQFINDSKATNVNSCWYALQSMKT-------KVVLILG-----GTDKGNDYTEI-EQL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  +   G     L       + ++  + +M        +   +GD V++
Sbjct: 364 VKDKARALVFLGVDNSKLHKFFDGKVKNIADASSMKEAVEKSYALAEEGDTVLL 417


>gi|189347180|ref|YP_001943709.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
 gi|189341327|gb|ACD90730.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
          Length = 474

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 115/341 (33%), Gaps = 39/341 (11%)

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT-----HLVRPHIAVITTIAP 194
            G     I    T+   P   +   F +      +  F        L RP IA+I  I  
Sbjct: 134 PGFLVGGIPENFTIGCRPSGREDAGFFVTEGDEYDTAFFDKRSKFMLYRPDIAIINNIEF 193

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F  +E+I  +       + + GT+ +N DD     + +K+     +    FG  +
Sbjct: 194 DHADIFDSLEDIRKSFRLFVNLIPRNGTLLVNGDDPEACAVASKAFCRTER----FGFDQ 249

Query: 255 NADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             ++  +        +   +  L     +V     G H   N L  +         ++T 
Sbjct: 250 ECEWTAKDMNTEENVTTFSIFHLGNPQGKVRIPLFGKHNIMNTLAAVAAARHAGLSMETI 309

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +AL +F   + R +       +   TLI++ +  +P ++KA +  +S++     GRRI 
Sbjct: 310 AEALPLFKRPKRRMEI--TEGFESGITLIED-FAHHPTAIKATLEAVSEL---CIGRRIV 363

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-------------FHVLALKDALPR 420
              +          F  +LA      +   V + G                  L+  L  
Sbjct: 364 ACFEPRSNTTTRNIFQKELARCFGPAS---VVVMGMVHRPERYAPDDRLDTEKLRRELEE 420

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                +       +    +  F++S+L   DVVV   SN  
Sbjct: 421 REKTVFLAGSQPDDYPADIVRFLKSTLKKNDVVVFM-SNGS 460


>gi|297569452|ref|YP_003690796.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925367|gb|ADH86177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 497

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 115/360 (31%), Gaps = 35/360 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A    +  +IA+TG+ GK+T   ++   L +  +     G+    +         P +
Sbjct: 114 ALAPEYLRTPVIAVTGTNGKSTVTTLVGELLRAAGRNVFVGGNLGTPL---CEYLAGPQE 170

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + E+    L           P IAV+  I+P HL  +      A++K  I     +
Sbjct: 171 ADWAVLEVSSFQLD----SAGKFSPDIAVLLNISPDHLDRYPDYAAYAASKWRIVANQGR 226

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS------EQSWME 273
                +N DD   E+L+  +       ++ FG    A        + +      +   + 
Sbjct: 227 EQWAVINRDDP--EILRLLAAGPPASRVFGFGGRGMAGPLAANQSREAAPGPPVDGLRLC 284

Query: 274 VQLQGKSMEVVHHGIGYHMA----QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +  + +  E               QN L  +    +          AL+ F        R
Sbjct: 285 LTQEDEHCEEYPLPANELAVEPNRQNALAAVLAARLAGCPPAAVGPALAAFQALP---HR 341

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                        D+S   N  ++ +A+  L        G  + + G + + G+      
Sbjct: 342 LALVATVAGVRYYDDSKATNIGAVISALQGL-------PGPVVLIAGGLDKGGDY----- 389

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L        +  V L G     ++ AL  ++ V  +  +             G+ V++
Sbjct: 390 -RLLLPAIKEKVRAVVLIGSAREKMRAALAPAVPVTEAADLPSAVRIATQLAAAGEAVLL 448


>gi|170748777|ref|YP_001755037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655299|gb|ACB24354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 454

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 109/333 (32%), Gaps = 41/333 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  ++   L+   +     G+    I         P      + 
Sbjct: 112 PGAPFVAITGTNGKSTTTALIAHVLAQGGRDVQMGGNIGTAILS----LEPPAADRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + V+  I P HL     +E+ A+ K  + +G    G   +
Sbjct: 168 EMSSFQID----LTPSLDPSVGVLMNITPDHLDRHGTMEQYAAIKERLIQG---AGLAVV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD+    +  +  A  ++     G     D          +     V+    +     
Sbjct: 221 GVDDAPSRAIADRRGADLVRVHVPHG-----DVLCTDALTVRDGI---VREPDGTALADV 272

Query: 286 HGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +GI    G H  QN  + + +   L    +      +      G   R      +G    
Sbjct: 273 NGIGSLRGAHNWQNAAVAVAVARALDLSPEQI---QAGLTSFPGLPHRMEEVGRRGHVLF 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S + A++    I     G+         E G      + +         +
Sbjct: 330 VNDSKATNADSTEKALTAFRDIHWILGGK-------AKEGGIFPLVPYFE--------RV 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           +H +L G    A    L  ++     ET++   
Sbjct: 375 AHAYLIGAASDAFAATLEGAVPYTRCETLENAV 407


>gi|254780004|ref|YP_003058111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori B38]
 gi|254001917|emb|CAX30170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Helicobacter pylori
           B38]
          Length = 447

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 136/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDTQIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A+++AL  K   
Sbjct: 165 NITSDHLDFHKSIENYRDAKNSFF---KDEGLKVINRDETNALFNPINARTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  +      L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLTPFISASLCYQQDLRDPNLKEIAL------MHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++T    L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLETIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    +  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GISDSSKVIVEKDRKKAILNALENLKDDEVLLILG 415


>gi|188994489|ref|YP_001928741.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
 gi|226722944|sp|B2RIE9|MURD_PORG3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188594169|dbj|BAG33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 450

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 123/389 (31%), Gaps = 31/389 (7%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A ++     + +     + PV    V   +G ++++  A R    A ++ ITGS GKTTT
Sbjct: 62  AIILEAKEIIKSPGIPDTAPVIRQAVAKEIGIVSEIEFAGRYT-DAFMVCITGSNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L   L          G+    +   +          + + EL    L  +    +  
Sbjct: 121 TMWLYHTLCKAGLDVGLAGNVGFSLARQV----AYDPHPYYVIELSSFQLDNM----YDF 172

Query: 183 RPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R ++A++  I P HL  +    E  A AK  I    +         DD F     A+   
Sbjct: 173 RANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQPEDCFIYWEDDPFISRWVAEH-- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +  F      D       + +E   M +       E +    G H   N + T  
Sbjct: 231 PPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAI 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +    +   +AL  F        R            I++S   N  S   A+  + 
Sbjct: 291 AAKAMDIKNEAIREALQDFKNVP---HRLEKIARVKGVDYINDSKATNVNSTWYALESMK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                   R I +LG     G    + + D+ E L L  +  +   G     L       
Sbjct: 348 T-------RVILILG-----GTDKGNDYTDI-ENLVLSKVDGLIFLGIDNEKLHKFFDGK 394

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  +  + +M             GD V++
Sbjct: 395 ISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|94987544|ref|YP_595477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|122063249|sp|Q1MPC1|MURD_LAWIP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94731793|emb|CAJ55156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 440

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 125/362 (34%), Gaps = 58/362 (16%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + +  L++  +A    S   +IAITG+ GKTT   +    L     +    G+    +  
Sbjct: 103 NTIQVLSETELAWYQLSNEKVIAITGTNGKTTIASLCAAMLVEQGISVFVGGNIGTPLSE 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +        V   + EL    L        L RP IA+ + I+  HL     ++E  SA
Sbjct: 163 YV---LCKKKVSVVVLELSSFQL----QTCSLFRPDIAICSNISINHLDYHRNMDEYISA 215

Query: 210 KAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K  I +   ++    L    ++  +    K+  +  + + +F  S               
Sbjct: 216 KLNICKNQCESDLAILKPGMEALVDSYNLKARVVFYRDLGNFSTS--------------- 260

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                              +G H  +N          L    + A K ++ F P E R +
Sbjct: 261 -----------------RLLGVHNLENAEAAWLACKELGVTEEIAKKVVTTFEPLEHRLE 303

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQS 387
           + R          +++S      +++AA+    Q         I +L G   + G+L+  
Sbjct: 304 QVRLL---NGVLYVNDSKGTTVEALRAALESFKQ--------PILLLAGGRFKGGDLTS- 351

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                   +    +  V L G      +DA    I + +  T++     + +   +G+V+
Sbjct: 352 -----LRPIIKKQVRIVGLFGNSREYFEDAWGDIIPITWDNTLEQAVKRLSNLAHNGEVI 406

Query: 448 VV 449
           ++
Sbjct: 407 LL 408


>gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida 3523]
          Length = 417

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 124/353 (35%), Gaps = 52/353 (14%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ I E+    +     L + VR  +  +  ++P HL  +   EE   +K  + + 
Sbjct: 141 GEKFDYCIVEVSSFQID----LFNCVRFDLGCVINVSPDHLDRYQNFEEYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                  H  GIK    +   + A ++         ++      
Sbjct: 197 --SNDFFVY------------DVHNNGIKYAGEYQIIRGAIYRGSIKLLDITET------ 236

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                    +  G H  +N+++ L I+  L  D++ AI ++  F   +G   R +     
Sbjct: 237 ---------NLYGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKIVKKV 284

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S   N  +  AA++ ++          I +LG + + G+ S      + + L
Sbjct: 285 NGITYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----MIKSL 334

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y + +V+L G     ++  +           M   F          +++++
Sbjct: 335 DKY-VKYVYLYGADKEYIESYIKSYCKYQLCNNMKQAFELASQKAEANEIILL 386


>gi|121634884|ref|YP_975129.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis FAM18]
 gi|120866590|emb|CAM10341.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis FAM18]
 gi|325142376|gb|EGC64785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           961-5945]
 gi|325198327|gb|ADY93783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           G2136]
          Length = 458

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 128/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +         + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RIGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHGKLLDALR 458


>gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
 gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
          Length = 434

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 120/387 (31%), Gaps = 60/387 (15%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
              L+   +       A II ITG+ GKTTT  ++   L    K  A +G+     G   
Sbjct: 50  RDILHYRDLKEYFTFPAQIIGITGTNGKTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQ 109

Query: 152 T---------LARMPVD--------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                     +  +  D         +  + E+    + + R     +     ++T I  
Sbjct: 110 IKPKGLTTPGILELYEDLALLHELGCEVLVMEVSSHAISQDRIF--GLDFAAKILTNITS 167

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +    + K      L   G   +N D+               K   S+G   
Sbjct: 168 DHLDYHKTLASYIATKNAF---LSDGGLKIINKDEEN--------ANFSPKNTKSYGVKN 216

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTA 313
             D Q + +    +++   +Q QG+   +     G H   N++   L +  +   +++  
Sbjct: 217 PCDLQAKNF----DKNHATLQYQGREYMLKMPLYGLHNLYNIMACVLCVRELFGLEMEQI 272

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           + +L  F    GR +       Q    ++D ++      ++  +      S         
Sbjct: 273 LSSLQDFGGVSGRMEVV----CQNPMVIVDFAHTH--DGIEKILQGFLGQSLS------V 320

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHV 424
           V G     G+  +S    +  V+  Y    ++++  +  +         + + +     V
Sbjct: 321 VFGA---GGDRDRSKRPLMGGVVRKY-AKKIYVTSDNPRSEDPMSIIRDILEGIEDREGV 376

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                              G+++ V  
Sbjct: 377 VVLPDRYEAIKKALDHQEPGEILFVLG 403


>gi|22537755|ref|NP_688606.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           2603V/R]
 gi|44888213|sp|Q8DY77|MURC_STRA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22534646|gb|AAN00479.1|AE014265_8 UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           2603V/R]
          Length = 443

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 127/374 (33%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L   L +I  T   IG             R  
Sbjct: 93  HEFLGDFMRQFTSLGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + ++ +FE       E         P  ++IT I   H   F+G+E++ +A  +  + +
Sbjct: 144 ANANYFVFEA-----DEYERHFMPYHPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + +++       IY +G   + DF  +   +    S  +V   
Sbjct: 199 QKG--LFIYGEDPKLHEITSEA------PIYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + +   H    G H   N    +  + I+  D+    + L  F   +      R     
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVK-----RRFTEKI 305

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L +       + 
Sbjct: 306 IDDTVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALSQAD 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y  +    +G   V  L   + +   +   E +  L         D  
Sbjct: 366 SVY-----LAQIYGSAREVDNGEVKVEDLAAKIVKHSDLVTVENVSPLLNH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
 gi|217986153|gb|EEC52492.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
          Length = 444

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 121/352 (34%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----AMEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   +++   AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD        K         ++  K   A   +   +    +    +    +
Sbjct: 207 EDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKEDGAIAYVEDGEVEINEP---IAFNME 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+  H  G H   N L      ++     +   KALS F   E    R          
Sbjct: 264 QEELALH--GTHNLYNSLAAGISANLAGIKKEDIRKALSDFKGVE---HRLEKVATVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ E++   
Sbjct: 319 QFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVRTK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAFQLAKKGETVLL 417


>gi|163802645|ref|ZP_02196536.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
 gi|159173533|gb|EDP58353.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
          Length = 453

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 148/412 (35%), Gaps = 33/412 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNIRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     DS  + +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEVIKRQFHHLVRTVPGNGLILAPKQDSSLQDVIER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           T   F    + D+Q    K   + S  EV LQG+ + +V    +G H   N LM +    
Sbjct: 236 TEKQFS-GIDGDWQAS--KLLVDGSKFEVLLQGEKVGIVDWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R      +   T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVAPELACQALGRFINTK---RRLELKGEEQGVTVYDD-FAHHPTAIELTLGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
             G+ R +AVL        + +  H +     SL++   V+L     +  +++D   +  
Sbjct: 347 KVGQKRILAVLE--PRSATMKRGVHKNTI-AASLHSADEVFLFQPDDIDWSVQDIAEQCQ 403

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEEFP 469
              + E  MD     I       D ++V  SN  GF     +L+  L ++  
Sbjct: 404 QRAFVEADMDTFVAKIVERAQPSDQILVM-SNG-GFGGIHGKLLEQLKQKAK 453


>gi|88809337|ref|ZP_01124845.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
 gi|88786556|gb|EAR17715.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
          Length = 483

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 141/413 (34%), Gaps = 56/413 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     + V+   D+L AL           +   IAI GS GKTTT  +
Sbjct: 82  SAIPEHNPELVAARHQQLEVWHRSDLLAALID---------QQPSIAIAGSHGKTTTSTV 132

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +T  L    +   A IG      G      +        + E   S    ++F   L   
Sbjct: 133 VTTLLHGAGEDPTAVIGGIVPCYGSNGHAGQG----RLLVAEADESDGSLVKFRASL--- 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243
              VIT +   H  ++  ++++         G ++   +  N DD    E  +A +    
Sbjct: 186 --GVITNLELDHTDHYRDLDDLIETLQRFGNGCQR---LLANQDDPILNEHFQADAW--- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGI 302
               +S  +S N DF         +++  ++  QG  + ++     G H   N +  L  
Sbjct: 238 ----WSIQRSDNVDFAGLPVALEGDRTIADLYEQGTFVGQITLPMPGLHNLSNTIGALAA 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++  I  LS        G+R+    +     ++D+ Y  +P+ + A + + + 
Sbjct: 294 CRMEGVPLERLISHLSELKTP---GRRFDYRGDWQGRQIVDD-YAHHPSEVAATLDMANL 349

Query: 363 IS-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY---------NISHVWL 406
           +        P    R +AV          +Q F    AE L            +     +
Sbjct: 350 MVSSGRSPLPRSPQRLVAVF--QPHRYSRTQEFQHQFAEALLSAELVLLAPIFSAGEAEI 407

Query: 407 SGFHVLALK---DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            G +  AL      L     V  + TMD L   ++   +  D+V+   +    
Sbjct: 408 PGVNSEALASVMQELSTQQSVLVASTMDELVTLVKEHSLPDDLVLAMGAGDVN 460


>gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 414

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 136/374 (36%), Gaps = 64/374 (17%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA +IA+TGS GK+T   ML   L ++      +G+          L ++    D+ 
Sbjct: 93  RNTKAKMIAVTGSNGKSTIVTMLDFVLRNLGYKSILVGNIGTPP-----LNKIGEKFDYC 147

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    +     L + V   +  +  ++P HL  +   EE   +K             
Sbjct: 148 VVEVSSFQID----LFNSVEFDLGCVVNVSPDHLDRYKNYEEYKQSKLN----------- 192

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                      L   S    +  +++ G     ++Q+ +     + + +    +      
Sbjct: 193 -----------LAKFSKDFFVYDVHNTGIKYAGEYQIVRGSIYKDTTKLLDITE------ 235

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H  +N+++ L I      D+  A+ A+  F   +G   R     N    T I+
Sbjct: 236 -TNLFGEHNLENIIVVLNIFDRFGIDISKAVAAIKKF---KGLKHRCEIVKNIAGVTYIN 291

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AA++ ++          I +LG + + G+ S      +++ L+ Y + +
Sbjct: 292 DSKGTNVGATIAALNSITS-----SKNIILLLGGVAKGGDFSL-----MSKSLAKY-VKY 340

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           V+L G     +++ +           M   F        D ++V++    +S        
Sbjct: 341 VYLYGQDKEYIENYIKDLCQYQICNDMKDAFRLASQKAQDSEIVLLSPACASFDEFSGYA 400

Query: 453 -NSCGFYRLINLLL 465
                F +L+  L 
Sbjct: 401 ERGEVFEKLVAELK 414


>gi|194014783|ref|ZP_03053400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
 gi|194013809|gb|EDW23374.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
          Length = 446

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 132/390 (33%), Gaps = 42/390 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTT 121
           +  + D+   I +  IP   V  V  AL +          A   + +  I ITGS GKTT
Sbjct: 63  IFEDKDITILIKNPGIPYENVM-VQEALRRQIPVWTEIELAYHLTSSPFIGITGSNGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L    +     G+      V   +A      ++ + EL    L      T  
Sbjct: 122 TTTLIYEMLKQDSQKTLVAGNIGT---VASEVAANAAGDEWIVTELSSFQLMG----TVE 174

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I++I  I  AHL      +E   AK ++F   ++     +N DD     L   S A
Sbjct: 175 FRPKISLILNIFDAHLDYHHTRDEYEKAKQKVFAHQQEDDIAVINLDDPSVVKLAEGSKA 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              K ++ F   +     +         +   +      ++ V    G H  +N+L  + 
Sbjct: 235 ---KKVF-FSVKEP----VEHGAFIQHGAIYYMNEHIIDVKDVV-LPGEHNQENILAAIC 285

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V       +   + L+ F   + R +      ++ F+   ++S   N  +   A+S   
Sbjct: 286 VVKNAGCSNEAITRVLTTFGGVKHRLQFVDTIQSRKFY---NDSKATNILATTKALSAFE 342

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q +         +L    + G         +       ++  +   G             
Sbjct: 343 QPT--------ILLAGGLDRGNEFDELKPFM------KHVKGIITFGETAPKFVKLGEEL 388

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              HV + + ++       +   + DV+++
Sbjct: 389 GIHHVKHVDNVEQAVPAAFNISEEEDVILL 418


>gi|332139619|ref|YP_004425357.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549641|gb|AEA96359.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 452

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 147/429 (34%), Gaps = 60/429 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +  ++   S P + +D++L                 +I ++G+
Sbjct: 67  IGNAMSRGNPAVEYV--LNRNLPYTSGPQWLLDNLLK-------------DRWVIGLSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L          IG    + GV   +     D  F + E         
Sbjct: 112 HGKTTTSSMVAWILEHAGLNPGYLIGGVPENFGVSARVG----DSPFFVIEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP   VI  +   H   F+ +  I +    +   + + G I    +    E
Sbjct: 168 DKRSKFVHYRPKTLVINNLEFDHADIFADLAAIQTQFHHLVRMVPENGLILTPNNTPSIE 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
            +  +      +   S GK  +A+          + S   V   G  +  V    +G H 
Sbjct: 228 DMLKRGCWSSRQ---SLGKEWHAEL------LKKDGSEFNVLHNGVIVGTVNWSLVGQHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N LM +         +  AI ALS+F   +   +R          TL D+ +  +P +
Sbjct: 279 VDNGLMAIAAAHHAGVTLTDAIDALSLFKNVK---RRMEVKGEVNGITLYDD-FAHHPTA 334

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-----ISHVWLS 407
           +   +  L      G  R +AVL          +S  + +                V+L 
Sbjct: 335 IATTLDGLR--KKVGNARILAVL--------EPRSNTMKMGIYKDTLANSWQKADEVYLY 384

Query: 408 GFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RL 460
               +  +L D++  S       + ++ +   + +    GD ++V  SN   F     R+
Sbjct: 385 EPEGMDWSLVDSVAHSNAPTQCFKGVEKIVQGVCNVAQPGDHILVM-SNGS-FEGIHGRI 442

Query: 461 INLLLEEFP 469
           ++ L  +F 
Sbjct: 443 LDALASKFK 451


>gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 483

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 160/478 (33%), Gaps = 67/478 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +    + +   + +S DSR       FFA KG ++   +++       A
Sbjct: 16  NFREISSA-GEYYFNWLKEVNFDQLSYDSRKSTENTLFFA-KGLNFKK-EYLTDLE---A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+  +A       ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAASFYDFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGV------------PLTLARMPV-----DVDFGIF 165
                 L  +     A + +    +               L L  M        +   + 
Sbjct: 125 YFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKALTTGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           E+            + +   + V   I+P H+       +E+    K ++   L+ +   
Sbjct: 185 EVSSQAYK--TERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQL---LKNSRYF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K +     I   +    S+N   + +     ++ S         S   
Sbjct: 240 VANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSV--------SGAF 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G    +N L T      L A ++     L++       G+        G    ID
Sbjct: 292 DIRLLGRFNQENALATALATKALGASLENIHDGLALAV---VPGRMELLTAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-IS 402
             Y  N  S++  + V+ +   H  G+ + VLG     G   +S   D  +V+  +  + 
Sbjct: 349 --YAHNGLSLENLVEVVEE---HHAGQLVLVLGS---TGNKGESRRKDFGQVIEKHPRLD 400

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMD-------GLFLFIQSSLVDGDVVVV--KS 451
            +  +          +   I    S T+D        +   +  +    D V++  K 
Sbjct: 401 VILTTDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKG 458


>gi|330997827|ref|ZP_08321662.1| UDP-N-acetylmuramate--L-alanine ligase [Paraprevotella xylaniphila
           YIT 11841]
 gi|329569715|gb|EGG51480.1| UDP-N-acetylmuramate--L-alanine ligase [Paraprevotella xylaniphila
           YIT 11841]
          Length = 458

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 146/431 (33%), Gaps = 55/431 (12%)

Query: 57  ILHAV-QKGAGLVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRSKAT 109
           I  A   K A LVV    +      L+        +     VLGAL +            
Sbjct: 63  IPSACRDKDACLVVYTPAIPCEHAELAYFKANGFEIEKRAQVLGALTRAHKG-------- 114

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            + + G+ GKTTT  M    L        A +G    + G    L+      D+ + E  
Sbjct: 115 -LCVAGTHGKTTTSSMAAHILHQSHVDCNAFLGGITKNYGTNYILS---PKSDYVVIEA- 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E     H + P+ +VIT   P HL  +   E    +  +    +   G + L   
Sbjct: 170 ----DEFDRSFHWLTPYASVITATDPDHLDIYGTKEAYLESFRKYTSLIRPGGFLVL--- 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
               E L+ +         YS+ +    DF     +    + + + +   G   +V    
Sbjct: 223 ---HEGLEMQPDVQEGVMTYSYSRGHG-DFHAENIRIGDGEIYFDFISPLGHIKDVQLGV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 +N +  + +  I     +   + ++ F   +   +R+   +       + + Y 
Sbjct: 279 PVSINIENGIAAMALAQISGVTPEEIKQGMASFRGVD---RRFDFRMKSDKAVFLTD-YA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSL 398
            +PA ++ ++  + ++     G++IA +     +   ++ F+ + A          +  +
Sbjct: 335 HHPAEIRQSVISVREL---YRGKKIAAIFQ-PHLYTRTRDFYKEFAGSLSLLDEVILTDI 390

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           Y      + G     + D L  ++        + +   ++ S  D DV ++  +     Y
Sbjct: 391 YPAREAPIPGVTSRLIYDRLAPTVKKCLCR-KEDVPEIVRQS--DADVFILLGAGDLESY 447

Query: 459 --RLINLLLEE 467
             ++  +L E 
Sbjct: 448 APQITEVLEER 458


>gi|240125711|ref|ZP_04738597.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268684304|ref|ZP_06151166.1| hypothetical protein NGKG_01112 [Neisseria gonorrhoeae SK-92-679]
 gi|268624588|gb|EEZ56988.1| hypothetical protein NGKG_01112 [Neisseria gonorrhoeae SK-92-679]
          Length = 458

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 125/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTGHG-----WQIGEVNADGSFDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        DV TA +AL  F   +   +R          T
Sbjct: 279 GHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGADWDVAEALAPLGRRLHVGKDFDTFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|77462655|ref|YP_352159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
 gi|122063256|sp|Q3J4M6|MURD_RHOS4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77387073|gb|ABA78258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 465

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 51/403 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARLRSKATIIAIT 114
             ++V +  +  +     PV          VD+ +G   +               ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +     G+    +           D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLD----LDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F          +  D+     
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD-RAVIGVDEPEGLY 237

Query: 235 LKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGI 288
           L  + S A     +      +    +   W   + + ++    +G+      +  +    
Sbjct: 238 LAGQLSVAPEDDRVIRISAGQK--LERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN          +         AL+ F    G   R +    +G    +++S   
Sbjct: 296 GAHNHQNACAAYAACRTMGLAPRQIEAALASF---AGLPHRSQTVGEKGGVRFVNDSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL 406
           N  S   A+    +I     G           +G+     +    L  V+        +L
Sbjct: 353 NVDSAAKALQAFPKIRWIAGG-----------LGKDGGIVALQPHLGSVVKA------YL 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +  + H    ETM+            G+VV++
Sbjct: 396 IGHSARDFALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|226358157|ref|YP_002787896.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319800|gb|ACO47794.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 917

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 122/389 (31%), Gaps = 56/389 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  II+ITG+ GK+TT  M+   L    K      S   +IG    ++            
Sbjct: 502 RMPIISITGTNGKSTTSRMVAHILQQSGKVVGLTTSNGIYIGGEQVVSGDTTGPKSAKVV 561

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  + E   +  G +R         +  +  I P HL       IE++A  K+ 
Sbjct: 562 LSDPSVEVAVLE--TARGGILREGLGFATCDVGAVLNIQPDHLGLKGIETIEDLAWVKSL 619

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I E + + G   LN DD     ++ K+       I  F       +     +        
Sbjct: 620 IVEVVSRNGASVLNADDPLTLKMRRKARG----EIILFSMCGGGAYSAELKEHIGGGGTA 675

Query: 273 EVQ--------------------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            V+                    ++ + +     G      QN L    I       +  
Sbjct: 676 IVREPTVLGDELVLYQDDRRQPIMRARDIPATLGGFAQVNVQNALAAAAIAVAQQVPLQM 735

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              ALS F          R  L  G    +   Y  NP  M+    ++  + P  +GR I
Sbjct: 736 IRSALSSFS-TSFELSPGRLNLYDGHPFRVLLDYAHNPTGMEHLRELIGHLRP-PKGRVI 793

Query: 373 AVLG--------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
            V+G        D+  MGEL+      L  ++    +      G     +++   R    
Sbjct: 794 GVMGVAGDRRDEDIVRMGELAAQAFDVL--IVREDELRRGRAVGEGARLIEEGALRGGLD 851

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             H+                 V GD+VV+
Sbjct: 852 SAHMQTILDEPSAVDAALRLAVPGDLVVL 880


>gi|269967387|ref|ZP_06181447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
 gi|269827975|gb|EEZ82249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
          Length = 437

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 125/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  +IAITGS GK+T  ++  +   +        G+          L  +  D D  + E
Sbjct: 107 QKPVIAITGSNGKSTVTDLTGVMAKAAGLDVGVGGNIGVP-----ALDLLEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +  L    +   A    ++  H+  + G+ +   AK  IF          +N
Sbjct: 162 LSSFQLETMSSL----KLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH---AALAVVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        ++       + +FG S N DF    ++    ++W+    Q         
Sbjct: 215 RDD-------QETFPDAEMPLVTFG-SDNQDF---GFEVDGNRTWLLDHGQRVVASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 264 LVGKHNLSNALVALALLKAADVNYHNALNA---LKNYTGLTHRCQVVADNQGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + S      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGLEST-----GKLYLLVGGVGKGADFSP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       + +P        +TM+ +   + S L  GD+V++
Sbjct: 370 FGADGD---EFMPLHESAIRFDTMEDVIQQVSSQLKPGDMVML 409


>gi|330999324|ref|ZP_08323041.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
 gi|329575182|gb|EGG56733.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
          Length = 440

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 124/377 (32%), Gaps = 43/377 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            ++A+ G+ GKTTT  ML   L          IG    + G    L     + ++ + E 
Sbjct: 92  HVLAVAGTHGKTTTTSMLAWILEDCGLNPSFLIGGVPQNFGHSARLT----ESEYFVIEA 147

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V  RP   ++  +   H   F  +E I      +   +   G +  
Sbjct: 148 DEYDTAFFDKRSKFVHYRPRTVILNNLEYDHADIFPNLEAIERQFHHLVRTIPSHGKVIF 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
           N      E L             SFG S   D++L + +         +   GK +    
Sbjct: 208 N---EASEALHRVLKMGLWTPAESFGTSPVCDWRLVEHEGA------RLFAGGKEVGRFE 258

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    +          + A+ ALS F   +   +R           +ID+
Sbjct: 259 LSLPGEHNLLNASAAVAAAVNAGVSAERAVDALSRFEGVK---RRMEVKGEVAGTKVIDD 315

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I  +     +  GR +AVL      M  +G +       L +      
Sbjct: 316 -FAHHPTAIEETIKAVRS--KYQTGRLLAVLEPRSNTMK-LGTMKAQLPGSLVQ------ 365

Query: 401 ISHVWLS-GFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
              V+   G  V         P        + ++ L   + S    GD ++V  SN  GF
Sbjct: 366 ADKVFCYQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILVM-SNG-GF 423

Query: 458 Y----RLINLLLEEFPA 470
                +L++ L  +F A
Sbjct: 424 GGVHKKLLDGLKSKFGA 440


>gi|189219420|ref|YP_001940061.1| UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate
           dehydrogenase [Methylacidiphilum infernorum V4]
 gi|189186278|gb|ACD83463.1| UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate
           dehydrogenase [Methylacidiphilum infernorum V4]
          Length = 732

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 142/423 (33%), Gaps = 58/423 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + ++     +     IP+     +L  L              +I +TG  GK+TT  M
Sbjct: 55  SAIPLDNPEYRACVQRGIPLVKRAFLLSLLA---------LDKKVILVTGMHGKSTTSGM 105

Query: 126 LTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L       +  +G+     G    L R    V  G          E         P
Sbjct: 106 IAWILKDCGLDPSFYVGAETLTPGGSAYLGRGEYMVIEG---------DESDGSFLYFSP 156

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V+  I   HL+ +S I+ I  A  E+         +  N DD     L  ++     
Sbjct: 157 QYLVVLNIEEEHLNYYSDIDAILLAFKEMIA--RTQDIVIFNQDDPHCRTLLYRA----D 210

Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           K  + +  K +  DF +    Q + Q +   + Q +   +     G    QN L  L + 
Sbjct: 211 KKAFGYSLKERGPDFWIDS--QGASQGYPVYREQNRLCNIKLQIPGMQNVQNALAALSMA 268

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + +     +A  +LS F    G  +R+        + +ID+ Y  +P  +KA +      
Sbjct: 269 TSIGISPLSASSSLSRFL---GLKRRFELKYKGKDYEVIDD-YAHHPTEIKATLR----- 319

Query: 364 SPHGEGRRIAVLGDMCEMGE-------LSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415
           S  G G+R   L                + +FH  D+  V  ++       +G    +L 
Sbjct: 320 SAKGRGKRTVALFQPHRYSRIKTMKPLFAHAFHDADVVVVTEIFGAGE-PSNGIDGWSLA 378

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-----FYRLINLL--LE 466
             +    H  V + + +D L     S +  GD ++   S   G       +L   L  +E
Sbjct: 379 KEIKEQGHPAVLFEKDLDRLASRTLSIIQPGDTII---SLGAGDIYKTAEKLARYLHMIE 435

Query: 467 EFP 469
           E  
Sbjct: 436 ELK 438


>gi|85712535|ref|ZP_01043583.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
 gi|85693669|gb|EAQ31619.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
          Length = 455

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 116/345 (33%), Gaps = 40/345 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+TGS GK+T   ++          +   G+    +     L  +  D D  + E
Sbjct: 117 QRPVVAVTGSNGKSTVTTLVEQMGQYHGYRWVAAGNIGVPV-----LDALQQDADAYVLE 171

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++ + A +  ++  HL  +   +    AK  IF          LN
Sbjct: 172 LSSFQL----ETTRSLKLNAAALLNVSADHLDRYDSEQSYFEAKLNIFNH---ASVSVLN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV--V 284
             D      +     +   ++ + G  ++    +  +    + + + +   G  +     
Sbjct: 225 RQD------QQHWPKIVPDSVVTVGVDES----VSDYGLVKDDAGIAMTRNGSILARADR 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+   L +   L    D  I A++ F    G   R +          +D+
Sbjct: 275 FALAGTHNLVNIQAALALAETLGLSPDKGIAAIADFT---GLPHRCQVVYEAQGVRWVDD 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + +AAI+ L    P   GR I + G     G+   +    L  VLS   +  +
Sbjct: 332 SKATNIGATEAAINGLR---PMINGRLILIAG-----GDGKGAQFTQLLPVLSQ--VDVL 381

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     + +    +    Y E +       Q      D VV+
Sbjct: 382 LTIGRDGKKIAELRKGA---RYCEHLSDAVKTAQQIAEAEDWVVL 423


>gi|270340242|ref|ZP_06007559.2| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
 gi|270332137|gb|EFA42923.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
          Length = 497

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 119/357 (33%), Gaps = 32/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  A R      I  +TGS GKTTT  ++     +        G+    + + +   
Sbjct: 144 ISEIEFAGRYTHSKMIC-VTGSNGKTTTTSLIYHIFKNAGYDVGLAGNIGRSLALQV--- 199

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                  + I EL    L  +    +  R +IA++  I P HL  +    +    AK  I
Sbjct: 200 -AEDPHAYYIIELSSFQLDNM----YDFRANIAILLNITPDHLDRYDYKFQNYVDAKMRI 254

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                +  +     DD   +    K     ++  +S  K K +   + +      Q  +E
Sbjct: 255 IRNQTEEDSFIYWNDDPVVKKELEKYDIHAVQCPFSELKEKGSIGYIEE-----GQYKLE 309

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             +     +      G H   N L      +I     +   K+LS F   E    R    
Sbjct: 310 YPVPFNMEQERLSLTGKHNIYNSLAAGLASNISGIRKEQIRKSLSDFPGVE---HRLEKV 366

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      I++S   N  +   A+  ++          I ++G     G    + +  + 
Sbjct: 367 CDVAGVHYINDSKATNVDACWYALESMTT-------PTILIIG-----GRDKGNNYDAIK 414

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E++    +  V+L G     L D      I V  + +M             GD V++
Sbjct: 415 ELVKQKCVGLVYL-GADNKKLHDNFDDLGIPVADTHSMKDCVEACYKMAKTGDTVLL 470


>gi|169831595|ref|YP_001717577.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638439|gb|ACA59945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 449

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +++ ++A+TG+ GKTTT  +L        +     G+    +   +T        D  + 
Sbjct: 102 TRSPVVAVTGTNGKTTTTALLGELFRQAGRRTLVAGNIGVPL---ITEVENYGPQDVIVA 158

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T   RP +AVI  +   HL     +E    AKA IF   + +    L
Sbjct: 159 EVSSFQL----ETTRDFRPRVAVILNLTSDHLDRHGTMEAYIEAKAAIFANQQASDWTVL 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--- 282
           N+DD     L +++ A     +  F +      +L +     +   M  +  GK      
Sbjct: 215 NFDDPRTRALASRTRA----EVIFFSRQH----KLEQGVFIQDGQIM-ARAGGKEAAVCP 265

Query: 283 -VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L       +L        +AL+ F        R       G    
Sbjct: 266 VRTLSIPGAHNVENALAATAAGWVLGIGPSALGRALTSFQGVP---HRLETVGWVGGVEY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   NP +   A+           G  + + G   +  + +           +   +
Sbjct: 323 VNDSKATNPDAAIRALDA-------YAGPVVLIAGGRNKGNDFTAFMEK------AREKV 369

Query: 402 SHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     +A   A      V  ++ + G     + +   G+VV++
Sbjct: 370 RVLVIIGECAAEMAAAAARAGLGEVLRAKDLPGAVQLARDAARPGEVVLL 419


>gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 438

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 136/376 (36%), Gaps = 54/376 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +   +    G+          L  +  D    
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIGVP-----ALTLLKQDNQLT 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFS---GLPHRFQLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +  +ETM      +   ++ GD V++    +S     
Sbjct: 365 I-KVYCFGRDGGQLAALRPDVSQL--TETMAQAMALVAKVVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|333010253|gb|EGK29686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri VA-6]
          Length = 457

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLHDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
 gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
          Length = 514

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 163/475 (34%), Gaps = 54/475 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFV-----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +++  IQ      +P   +     + +S DSR       FF  KG  +    F+  AV
Sbjct: 28  LKEVI--IQQQWHITLPDHPIVDHVFHSLSYDSREADEATLFFC-KGQQFK-EVFLEQAV 83

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             G   V V+     SI ++ + V  + + + A+          +K T I ITG+ GKT+
Sbjct: 84  TGGVK-VYVSEQPYDSIDAVGLIVTDIREAM-AMIAQFFYDHPENKLTKIGITGTKGKTS 141

Query: 122 TKEML-----------TIALSSIKKTYACIGSYNNHIGVPLTLA---RMPVDVDFGIFEL 167
               L           T   SS + T   +    +H+  P  L    +M   V+ G+  L
Sbjct: 142 CAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPEALDLYKQMAKAVENGLTHL 201

Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
            M  S           +   + +   I+P H+S       ++    K ++ +    +  +
Sbjct: 202 VMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFDDYLYCKRQLIQH---SKQM 258

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQLQGKSM 281
            LN D  +FELL A++  L      +FG+S   D +++        +     +       
Sbjct: 259 ILNADSDYFELL-AETCTLYHVPYVTFGRSLTVDVEIQDATDTRSFDLIAHTLSFSDLEG 317

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G     N    L +  +L    +   +         GR        ++    L
Sbjct: 318 GYRLAILGTFNHDNATAALLVSHLLGFS-EKISRQAIANTVIPGRMHVI----DEPNQPL 372

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I   +  N  S+KA   +   + P+  G+ I + G     G  + S   D+A+ LS    
Sbjct: 373 ILIDFAHNYLSIKAVGELGHHLRPN--GKVIILTGS---TGGKALSRRADIAKALSEIAD 427

Query: 402 SHVWLSG----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +  S         A+   +       ++ +      +       S     D+V
Sbjct: 428 EAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAIAIALSHATTEDIV 482


>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 468

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 112/361 (31%), Gaps = 37/361 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A  I ITGS GKTTT  +    L +        G+      + +       + 
Sbjct: 106 FAGRYTNAKTICITGSNGKTTTTMLTYHILRNAGYNVGLAGNVGKSFAMQV----AEDNF 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ I E+    L  +    +  R  IA+IT I P HL  +    +    +K  I +   +
Sbjct: 162 DYYILEISSFQLDGM----YSFRADIAIITNITPDHLDRYDYKFQNYVDSKFRILQNQTE 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                    DS       K           F  +   D  +  +     +  +   L  K
Sbjct: 218 NDFFIFWAGDSTVANEIEKRGTSIKARKIPFDLTSQTD-NVPNYAFVDGKDIIFNNLTNK 276

Query: 280 SM----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N +       +     D   ++L  F   E    R      
Sbjct: 277 LFLEMETNNLPLKGNHNLYNSMAAGLASQVAGVSKDAIRRSLETFEGVE---HRMEYVAT 333

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S   A+  ++          + +LG     G    + + D++E+
Sbjct: 334 VRGVRYINDSKATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSDISEL 381

Query: 396 LSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVV 448
           +S   + H+   G     L              + YSE  +M+           +GD V+
Sbjct: 382 VSDR-VHHLIFLGVDNDKLIKFFGCHRNKEGKKIPYSEARSMEECVQQAYKVAKNGDTVL 440

Query: 449 V 449
           +
Sbjct: 441 L 441


>gi|227327093|ref|ZP_03831117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 438

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 129/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +       
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-----ALQLLEQPAQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH---ADL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V  +     
Sbjct: 209 CVVNADDALTMPVRGADA-----RCRSFGVDVG-DYHLNRQQ---GETWLRVDGERVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ A  +     I
Sbjct: 260 REIKLVGQHNYTNALAALALADAVKIPRSSALTALTSFT---GLPHRFQMAFERNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L+      EG    +LG   +  + S      L   L   +I 
Sbjct: 317 NDSKATNVGSTEAALSGLA-----VEGTLHLLLGGDGKSADFSP-----LVPYLQGEHI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           HV+  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 366 HVYCFGQDGQQLAALRPE--IAEQTETMEQAMCIIAERVKPGDMVLL 410


>gi|323343869|ref|ZP_08084096.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
 gi|323095688|gb|EFZ38262.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
          Length = 458

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 127/367 (34%), Gaps = 51/367 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V  RL      +   G+ GKTTT  M    +        A +G  + + G    L+ 
Sbjct: 101 RAQVLGRLTRTHKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                DF + E       E     H +RP ++VIT+  P HL  +   E    +      
Sbjct: 160 --DTSDFVVIEA-----DEFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTT 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++K G + ++ D      L+ K +      +Y +   +  DF        + +   +  
Sbjct: 213 LIQKGGALIIHRD------LEMKQNVQEGVKVYDYSLHEG-DFHAENIVIENGEITFDFI 265

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              ++++ +  G        N +  + +  +     +     +  +H  E   +R+   +
Sbjct: 266 SPIENIKDIRLGQPIPINIVNGIAAMAMAQLNGCTSEELRYGMKTYHGVE---RRFDFKI 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLA 393
                  + + Y  +P  +  +   + ++    + R+I A+      +   ++ F+ + A
Sbjct: 323 KTDKLVFLSD-YAHHPKEIYQSAKSIREL---YKDRKITAIF--QPHLFTRTRDFYKEFA 376

Query: 394 EVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           E LS          Y      +SG     + D L   +               +S +   
Sbjct: 377 EALSQLDEVILCDIYPAREQPISGVTSKLIYDNLKEGVE--------------KSMIHKE 422

Query: 445 DVV-VVK 450
           DV+ +VK
Sbjct: 423 DVIPLVK 429


>gi|218258172|ref|ZP_03474574.1| hypothetical protein PRABACTJOHN_00228 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225708|gb|EEC98358.1| hypothetical protein PRABACTJOHN_00228 [Parabacteroides johnsonii
           DSM 18315]
          Length = 472

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 148/423 (34%), Gaps = 44/423 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I       A  +VV T  V    S     +   +    + +  V   +   +  + + 
Sbjct: 61  DLIPDDFTDPAKTLVVYTPAVPEDHSEL--CYFRGNGFEVMKRARVLGEITDCSRGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M+   L        A +G    +    L L+    + D  + E       
Sbjct: 119 GTHGKTTTSSMVAHLLKQSHVDCNAFLGGILKNYNSNLMLS---AESDLTVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF----LNYDD 229
           E     H ++P++AVIT+  P HL  +   E    +       +   G +     +N   
Sbjct: 171 EFDRSFHWLKPYMAVITSADPDHLDIYGTPEAYRESFEHFTSLIRPDGCLLMKQGINVTP 230

Query: 230 SFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              E +K  ++   + T   S   S+ + F     +    + + +       +  +  G+
Sbjct: 231 RLQEGVKFYTYTGALDTKELSISNSQLSTFYAENVRIGGGEIFFDFVGPDVRIPDIQLGV 290

Query: 289 G-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 +N +  + +  +     +     ++ F    G  +R+   L +    LID+ Y 
Sbjct: 291 PVKVNVENGVAAIALAWLNGVTPEEIKHGMATF---AGPRRRFDFHLKKENIVLIDD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +PA +KA+I  + ++     GR++  +     +   ++ F  D A          +L +
Sbjct: 347 HHPAELKASILSVKEL---YAGRKVTGIFQ-PHLYTRTRDFAADFAASLSLLDELILLDI 402

Query: 399 YNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           Y      + G     + DA+     R I        + L   + +     +VV++  + +
Sbjct: 403 YPAREEPIPGVTSQIIFDAVTIADKRLIR------KEELLEVVAAEAGKLEVVLMVGAGN 456

Query: 455 CGF 457
              
Sbjct: 457 IEL 459


>gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
 gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
          Length = 467

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 133/376 (35%), Gaps = 43/376 (11%)

Query: 56  FILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F    +  GA L        V    +  +PV G  ++     +   A     +  +IAIT
Sbjct: 66  FAALVLSPGAPLTHPKPHWTVDKARAAGVPVVGDIEL---FARALDALPEGRRPWVIAIT 122

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMSHL 172
           G+ GK+TT  ++   L     T    G+          +  +P      ++  E+    L
Sbjct: 123 GTNGKSTTTALIGWVLQQAGLTVHVGGNIGIG------VLALPEPTPGAVYVIEVSSYQL 176

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF- 231
                LT    P  A++T I+P HL    G+E   +AK  IF+   +    ++  DD + 
Sbjct: 177 D----LTTGFAPDAAILTNISPDHLDRHGGMEGYVAAKRRIFQ--SRKTAPYVGIDDPYG 230

Query: 232 ---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              ++ LKA+  A+   ++          + +  W   +             +       
Sbjct: 231 FAIWQELKAEGRAVDPVSVERPMDDDLGMYLMDDWLTYNAGGR---PAPIVDLSKARSLP 287

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H AQN       V+ +    +T +K L  F    G   R     + G    I++S   
Sbjct: 288 GRHNAQNAAFAFLAVNDMGIPEETVVKGLLTF---PGLAHRMEAVGHIGHVRFINDSKAT 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + + A++   ++     G+         + G        DLA++     ++  +L G
Sbjct: 345 NADAARQALASYPKVFWIAGGK-------PKDGGID------DLADLFPR--VAKAYLIG 389

Query: 409 FHVLALKDALPRSIHV 424
               A    L  + HV
Sbjct: 390 EAAEAFAATLGDTPHV 405


>gi|110808025|ref|YP_691545.1| putative ligase [Shigella flexneri 5 str. 8401]
 gi|110617573|gb|ABF06240.1| putative ligase [Shigella flexneri 5 str. 8401]
          Length = 440

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 47  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 106

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 107 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 163

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 164 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 223

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 224 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 276

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 277 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 331

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 332 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 384

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 385 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 440


>gi|329119656|ref|ZP_08248337.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464253|gb|EGF10557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 499

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 133/374 (35%), Gaps = 42/374 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIAL-----SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFG 163
           ++A+ G+ GKTTT  ML   L     +          +++    +P    + P     F 
Sbjct: 147 VLAVAGTHGKTTTASMLAWVLEYANLAPGFLIGGVPQNFSVSARLPQATRQDPDSTSPFF 206

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F  +  I +    +   +   G
Sbjct: 207 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIQTQFHHLVRTIPSDG 266

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + LK          + +FG S+   +Q  +      Q   +V L+G+  
Sbjct: 267 LIAANG---REQSLKDTLEKGCWTPVEAFGTSEG--WQASE---ADAQGAFDVFLRGEKA 318

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        DV TA +ALS F   +   +R          T
Sbjct: 319 GRVAWDLMGEHNRMNALAVIAAARHAGVDVKTACEALSAFKNVK---RRMEIKGRARGIT 375

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P ++   I+ L Q    G  R +AVL      M  +G +  +    LAE  
Sbjct: 376 VYDD-FAHHPTAIATTIAGLRQ--RVGGARILAVLEPRSNTMK-LGTMKAALPESLAE-- 429

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 430 ----ADQVFCYAGGVDWDVAQALAPLGGKLHVGKDFDAFVAEIVKNAASGDHILVM-SNG 484

Query: 455 CGF----YRLINLL 464
            GF     +L++ L
Sbjct: 485 -GFGGIHGKLLDAL 497


>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 448

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 128/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  ++G+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENSEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S      +A+
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+           + GD V++
Sbjct: 371 YCRAA-----VLLGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|159030200|emb|CAO91092.1| murC [Microcystis aeruginosa PCC 7806]
          Length = 478

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 132/412 (32%), Gaps = 50/412 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +     +   L  P+F   DVL AL               IA+ G+ GKTTT  ++   L
Sbjct: 95  HNKEYQAARDLGYPIFHRSDVLAALIA---------DYDSIAVAGTHGKTTTSSLIGYVL 145

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I      +G  +        +  G F +  +   +     H   P I VIT
Sbjct: 146 LEAGLDPTII------VGGEVDAWEGNARLGQGRFLVAEADESDGSLTKHA--PKIGVIT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H  ++  + E+     E     +    +    D          + A   +   S+
Sbjct: 198 NIELDHPDHYQNLSEVIDTFHEFAHQCQ---ILVACLDCD--------TIAEHFRPTISY 246

Query: 251 GKS--KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILT 307
                K AD+ + +           V  +G  + ++     G H   N L  + I   L 
Sbjct: 247 SLDPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKIPGQHNISNALAVVAIGRYLG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS-MKAAISVLSQISPH 366
            +      A++ F    G  +R+         T ID+ Y  +P+  +    +   ++   
Sbjct: 307 LEFAVIADAIATF---AGAKRRFEHKGEANGITFIDD-YAHHPSELLATLAAAKLKVEGK 362

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF-------HVLALKD 416
              R IA+          + +F  +     S  ++   + ++ +G             + 
Sbjct: 363 QYQRSIAIF--QPHRYSRTTAFLEEFGSAFSSADVVVLTDIYSAGEVNINHVTGQQVAEQ 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 + +Y   +  L  F+   L  GD+ +   +      ++I  +L  +
Sbjct: 421 VRKHHKNAYYHPELSSLGQFLLEILQPGDLALFLGAG--NLNQVIPEMLSHY 470


>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
 gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
          Length = 492

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 112/349 (32%), Gaps = 24/349 (6%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF----GI 164
            I A+TG+ GK+T        L          G+             M    D      +
Sbjct: 128 KIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFMFPSDDPPYQVTV 187

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L     L     P + VI  ++P HL     +E     K  +FE ++ +    
Sbjct: 188 LEVSSYQL----ELPGSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSI 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           + + D F   +  K ++   K           D Q R+       +  E +L        
Sbjct: 244 IPHGDEFLRKVAYKYNSGSTKAWLGALPGVQLDNQARRAVVVVPTTKAEARL----YLSG 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H AQN      +   L   VD      ++        +      ++     I++
Sbjct: 300 LKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWIND 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISH 403
           S   N  +    I  L+          + +LG + ++ +   S     L+++L  +    
Sbjct: 360 SKATNVDAAYTGIKGLADRKA------VILLGGLAKVLDQDGSLGFKKLSDLLQNHRA-- 411

Query: 404 VWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G     ++  L     SI    S TM+      +     GD++++
Sbjct: 412 IVTFGAFGKQIEKELKEANVSIPCFRSLTMEDAVAIAEKLSKQGDIILL 460


>gi|269137740|ref|YP_003294440.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|267983400|gb|ACY83229.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|304557798|gb|ADM40462.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 137/410 (33%), Gaps = 34/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M+  
Sbjct: 64  LVIIGNAMARGNPCVEAILERNIPYVSGPQWLHDEVLRHRWVIAVAGTHGKTTTAGMVNW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L S        IG    +  V   L + P    F + E            +  V   P 
Sbjct: 124 ILESCGYEPGFVIGGVPGNFSVSARLGKSP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I L   D+  + + A       +
Sbjct: 180 TLILNNLEFDHADIFDDLRAIQRQFHHLVRLVPGQGRIILPAGDANLKQVMAMGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
                     A +     +  ++ S   V L G+ + EV    +G H   N LM +    
Sbjct: 240 LC-----GDEAAWSAT--RLSTDASRFSVSLDGECVGEVEWALVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A +AL  F       +R      Q +   + + +  +P ++ A ++ L    
Sbjct: 293 HVGVPPAEACRALGSF----INARRRLELRGQAYGVSVYDDFAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGF-----HVLALKDAL 418
             G  R +AVL    E    +    +   E+         V+L         V  + +A 
Sbjct: 348 VGGTARILAVL----EPRSNTMKMGVCKNELAPALGRADEVFLYQPQHIPWQVAEVAEAC 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    H+S  +  L   I  +   GD ++V  SN  GF  + + LL+  
Sbjct: 404 VQ--PAHWSADLGTLVEMIVKNAQPGDHILVM-SNG-GFGDIHDRLLQAL 449


>gi|288929764|ref|ZP_06423607.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328865|gb|EFC67453.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 460

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 137/412 (33%), Gaps = 41/412 (9%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +K    +VV T  +         V+   +      +  V   L      +   
Sbjct: 61  DEIPQACKKAQSCLVVYTPAIPDDHKEL--VYFRQNGFEIQKRAQVLGTLTRTLKGLCFA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  M    +        A +G  + + G    L+      ++ + E       
Sbjct: 119 GTHGKTTTSCMCAHIMHQSHPDCNAFLGGISKNYGTNYILS---PKSEYVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H +RP ++VIT+  P HL  +        +       + + G + +       +
Sbjct: 171 EFDRSFHWLRPWMSVITSTDPDHLDIYGTKAAYMESFRHYTTLIREGGVLII------KK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            ++ K        +Y +      DF     K  +     +     ++++ V  G      
Sbjct: 225 GVELKPDVKPGVKVYEYALDAG-DFHAENVKIDNGNITFDFVSPVENVKNVTLGHPIPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +   + +     +  +H  +   +R+   +       + + Y  +P  
Sbjct: 284 IENAVAAMAMAQLNGCNAEELRYGIKTYHGVD---RRFDFKIKTPHLVFLSD-YAHHPNE 339

Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
           +  +   L Q+    + R+I AV      +   ++ F+ + A+ LSL         Y   
Sbjct: 340 ILQSAQSLRQL---YKDRKITAVF--QPHLYTRTRDFYKEFAKALSLLDEVILCDIYPAR 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              + G     + D L   +        D +   +Q    + DV+V   +  
Sbjct: 395 EEPIEGVSSKLIYDNLDAGVEKSMIA-KDDVLELVQQ--RNFDVLVFLGAGD 443


>gi|218551527|ref|YP_002385319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|218359069|emb|CAQ91730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|324112144|gb|EGC06122.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           fergusonii B253]
 gi|325499791|gb|EGC97650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia fergusonii
           ECD227]
          Length = 457

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMTTW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK72]
          Length = 481

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 91/501 (18%), Positives = 177/501 (35%), Gaps = 82/501 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------------VPLTLARMPVDVDFGIFE 166
                 LS      A + + N  +                  + +    +  D    I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLELIKMMAQALANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +  +L           ++  +         +      +  GK +   
Sbjct: 241 VNSGMDHFQIVKEQVASL-----------EHDFYGADSSNTIKDSQAFSFEATGKLAGNY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++        G+        G  
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S++  +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLRNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTEREGDAVILA 453

Query: 450 -KSSNSCGFYRLINLLLEEFP 469
            K +++   Y+++      +P
Sbjct: 454 GKGADA---YQIVEGEKVAYP 471


>gi|313106944|ref|ZP_07793147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
 gi|310879649|gb|EFQ38243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
          Length = 448

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 124/346 (35%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++     +  K  A  G+          L  +  D++  
Sbjct: 105 REAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-----ALDLLADDIELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +   +
Sbjct: 160 VLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+    L A +        +SFG +K  DF+     +   Q W+  Q        
Sbjct: 213 VVNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQFDKLLPVG 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +        D  + AL  F     R +  R    +   +  D
Sbjct: 267 ELKIRGAHNYSNALAALALGHAAGLPFDAMLGALKAFSGLAHRCQWVR---ERQGVSYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +    +G+ + + G   + G         +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  ++ +    T+D           +GD V++
Sbjct: 375 VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLL 420


>gi|253991523|ref|YP_003042879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638401|emb|CAR67023.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelat
           ligase (ec 6.3.2.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782973|emb|CAQ86138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 463

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 129/369 (34%), Gaps = 34/369 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +      +   P    F + E  
Sbjct: 112 VLAVAGTHGKTTTAGMLAWILEACGYKPGFLIGGVPGNFETSAQIGESP----FFVIEAD 167

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  I      +   +  +G IF  
Sbjct: 168 EYDSAFFDKRSKFVHYSPRTLIMNNLEFDHGDIFGDLAAIQRQFHHLVRIVPGSGKIFAP 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D   + + +      ++ +      +   +Q +K    ++ S   V   G+ + EV  
Sbjct: 228 DNDINLKQVLSMGCWSELEQV-----GETGSWQAKKI--STDSSDYRVFYCGEVVGEVNW 280

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N L+ +     +      A +ALS F       +R      +   T+ D+ 
Sbjct: 281 SLVGEHNMRNGLIAIAAAHHVGVQPTDACRALSDFINAR---RRLELRGQENGVTVYDD- 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R I VL    E    +    I   E+         V
Sbjct: 337 FAHHPTAILATLEALRS-KVGGTARIITVL----EPRSNTMKMGISKNEIAPALGRADEV 391

Query: 405 WLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L        HV  + D   +    ++S  +D L   I      GD ++V  SN  GF  
Sbjct: 392 FLFQPANIKWHVSEIADHCVQ--PAYWSADIDSLVNMIVDKAQQGDHILVM-SNG-GFGD 447

Query: 460 LINLLLEEF 468
           +   LL + 
Sbjct: 448 IHEKLLSKL 456


>gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 448

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 129/356 (36%), Gaps = 32/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +V+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDEVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLREHE 317

Query: 335 NQGFFTLIDESYNAN-PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    + YN +   ++ AA++ +  +    +G+ + + G   +  + S      +A
Sbjct: 318 G-------VDYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDGKGADFS-GLRAPVA 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                       L G     +  AL  ++ +   +T+             GD V++
Sbjct: 370 RHCRAA-----VLLGRDAELIAQALGDAVALVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|224540980|ref|ZP_03681519.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526131|gb|EEF95236.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 86/279 (30%), Gaps = 31/279 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +     A+L      I I G+ GKT+T  M         KT   IG    +         
Sbjct: 88  HYYDFLAKLMDDHITIGIAGTHGKTSTTGMAYHLFKDYDKTNVLIGDGTGY--------- 138

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                 + I E       E +       P  + I  I   H+  F  +E+   +  +   
Sbjct: 139 ATKGAKYFIAE-----CCEYKDHFLWYHPDYSYINNIEMDHVDYFKSMEQYEQSFEKYAN 193

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K   I +  DD     L         K +  FG     D Q +      +    +V 
Sbjct: 194 QAKK--AIVIWGDDPHLPHLN------YTKRVVKFGVKDGNDVQAKNVINNEKGLSFDVY 245

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + G           G H   N L  + +  +   D D     LS F   +      R A+
Sbjct: 246 IYGDLFGHFTLPFYGMHTLYNTLGVITLGYLEGMDFDYMQSQLSTFKGTK-----RRYAV 300

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +    +  + Y  +P ++K  I    +      G++I 
Sbjct: 301 KEVGNNVYVDDYAHHPTAIKYVIE---ETRTRFPGKQIV 336


>gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 509

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 144/474 (30%), Gaps = 71/474 (14%)

Query: 30  ISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           IS DSR I     FF   KG       ++  A   GA   V         G        V
Sbjct: 23  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPEGKGMH---ALVV 76

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN 145
            DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I     A   S ++
Sbjct: 77  RDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDD 136

Query: 146 ------------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                        +  P +L      R  VD       + +S     +     +   +  
Sbjct: 137 IVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGF 196

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIK 245
              I P H+         +    K ++     K     +N   D F E+  A +      
Sbjct: 197 FLNITPDHIGPNEHPNFADYLHCKLQLMVNSRK---CIINAMSDHFDEIYAAATTTTNPD 253

Query: 246 TIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHGIGY 290
           +IY F ++        +  DF+ +  +   +++  ++              +     IG 
Sbjct: 254 SIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIGD 313

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    +    +   + +   K           G+            ++D  Y  N 
Sbjct: 314 FNEMNGTAAIIGAGLAGENYEECAKG---IRHVTIPGRMEALPSKNHGTVIVD--YAHNK 368

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
           ASM A +S +         + I V+G     G+   S     +E L+ Y     +L    
Sbjct: 369 ASMMALMSFMQ--REFNTPKIIVVVGAP---GDKGVSRRPGFSESLTAY-ADKAFLTTDD 422

Query: 407 SG-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
            G    + +   +   I     +       +       +     D+V++  K +
Sbjct: 423 PGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGA 476


>gi|218697983|ref|YP_002405650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218354715|emb|CAV01756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
          Length = 457

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPTHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|16132055|ref|NP_418654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89110952|ref|AP_004732.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083675|ref|YP_001732995.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238903337|ref|YP_002929133.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|3219995|sp|P37773|MPL_ECOLI RecName: Full=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase; AltName: Full=Murein peptide
           ligase
 gi|537075|gb|AAA97130.1| ORF_o457 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790680|gb|AAC77190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|85676983|dbj|BAE78233.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169891510|gb|ACB05217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863751|gb|ACR65749.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450944|gb|ACX41366.1| UDP-N-acetylmuramate [Escherichia coli DH1]
 gi|315138786|dbj|BAJ45945.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli DH1]
          Length = 457

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSAHLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|332304541|ref|YP_004432392.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171870|gb|AEE21124.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 436

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 155/421 (36%), Gaps = 50/421 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +   +   S P + +++VL             +   ++A++G+
Sbjct: 55  IGNALSRGNLAVEYV--LNRGLPYTSGPQWLLENVL-------------NDRWVLAVSGT 99

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  ML   L S        G     I     ++    +  F + E          
Sbjct: 100 HGKTSTSSMLAWILESAG---MSPGFLIGGIPQNFGISARLGETPFFVIEADEYDSAFFD 156

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V  RP   VI  +   H   F  I +I      +   +   G +     D+    
Sbjct: 157 KRSKFVHYRPRTLVINNLEFDHADIFDSIADIQKQFHHLIRMIPGNGLVIAPKADTHITQ 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +  K     ++ +        +D+++   +  ++ S  +V  +G S   V    +G H  
Sbjct: 217 VLDKGCWSPVQFV-------GSDWKVA--ECAADGSEFDVVYKGTSFGRVKWSLLGQHNV 267

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN +M +          + AI+AL+ F   +   +R          T+ D+ +  +P ++
Sbjct: 268 QNAMMAIIAARHAGVLPEVAIEALTNFVNAK---RRMEVLGTVNGITVYDD-FAHHPTAI 323

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGF- 409
              +  L   +  G+ R +AVL    E    +     H   LA+  S      V++    
Sbjct: 324 STTLEGLR--AKVGKARILAVL----EPRSNTMKMGVHKQTLAQ--SWSAADQVFIYQPS 375

Query: 410 HVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           H+    DAL     V  S  + ++ L   I S    GD +++  SN  GF  +   LL++
Sbjct: 376 HLSWSMDALLAQSEVTTSLHDDLEILEKSILSYAKPGDHILIM-SNG-GFGGIHQHLLQK 433

Query: 468 F 468
            
Sbjct: 434 L 434


>gi|324019282|gb|EGB88501.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 117-3]
          Length = 445

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPTHIPWQVAEVAE 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 445


>gi|289207544|ref|YP_003459610.1| UDP-N-acetylmuramate [Thioalkalivibrio sp. K90mix]
 gi|288943175|gb|ADC70874.1| UDP-N-acetylmuramate [Thioalkalivibrio sp. K90mix]
          Length = 467

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 128/384 (33%), Gaps = 28/384 (7%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  +L   L          G     +     ++    
Sbjct: 96  WLAEHVLHDRWVLAVAGTHGKTTTASLLAWILDHAGL---SPGFLIGGVPGNFGVSARMG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +  F + E               V  RP   V+  +   H   +  +  I      +   
Sbjct: 153 EAPFFVIEADEYDSAFFDKRAKFVHYRPRTLVLNNLEFDHADIYPDLAAIERQFHHLVRT 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I L   D+  E +        ++ I +          L       + S  EV +
Sbjct: 213 IPGQGLILLPACDAALERVLEMGCWTPVERITT-DPDTGDTVALAARPLNEDASEFEVLV 271

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G     V     G H   N L  LG        +   I AL  F    G  +R      
Sbjct: 272 NGVVQGRVAWEMTGQHNLSNALAALGAARHAGVPLAAGIAALPAF---RGVRRRQELRAE 328

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSFHIDL 392
                +ID+ +  +P +++  +  L        GR IAVL        MG  +++    L
Sbjct: 329 IDGIRVIDD-FAHHPTAIRLTLEGLRG-RVVPGGRLIAVLEPRSNTMRMGIHAEA----L 382

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              L   + +H++ +   +    D L R     +  +  ++ L   I ++   GD +V+ 
Sbjct: 383 GAALERADAAHLYHA-PDIDWSTDDLERQLGGQLAVARDIESLLQGILATARPGDTLVIM 441

Query: 451 SSNSCGFY----RLINLLLEEFPA 470
            SN  GF     RLI  L    P+
Sbjct: 442 -SNG-GFDGLHQRLIAGLQSREPS 463


>gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 448

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S +    +AE
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-ALRAPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   ET+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVTLVRVETVQAAVEQSARLAQRGDAVLL 420


>gi|325136319|gb|EGC58927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M0579]
          Length = 458

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP   V+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIICNG---QQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +   + TA +ALS F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALSTFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +    L E  
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKSALPESLKE-- 389

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 390 ----ADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|229586685|ref|YP_002845186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           africae ESF-5]
 gi|228021735|gb|ACP53443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia africae
           ESF-5]
          Length = 500

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 130/409 (31%), Gaps = 83/409 (20%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++V    S SIP+    D+L A                IAITG+ GK+TT  +++  L+
Sbjct: 77  HEIVNIAKSFSIPITSDIDLLFA---------KSKNLKFIAITGTNGKSTTTALISHILN 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S    Y   G+        ++  +     D  + EL    L  ++  T      IAV+  
Sbjct: 128 SSGLDYPVAGNIG------VSALQAKASKDGYVLELSSFQLDLVKTFTA----KIAVLLN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL     +    +AK++IF+ +++     +N D+ +   +  K        +  F 
Sbjct: 178 ITPDHLDRHQDMTCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFS 237

Query: 252 KSK--NADFQLRKWKQCS---EQSWMEVQLQGKSM------------------------- 281
            ++       +   K  +   +    E+Q   +S+                         
Sbjct: 238 VAQILENGISVVDDKISANFFDDISFELQHNSESLRQYEFQGEPVEPECIKIREHRQDLQ 297

Query: 282 ------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                           +  G H  +N+  +  +  I+  +    ++++S F        R
Sbjct: 298 NSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLP---HR 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   +    +  ++S   N  S   +I  L  I     G          E G       
Sbjct: 355 MQYIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGI-------PKEGG------- 400

Query: 390 IDLAEVLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
               E +  Y  +I   +  G       +     +     + ++  F  
Sbjct: 401 ---IEEIKPYFSHIKKAYFYGQAKEIFANTAKNIVDFIICDNLEQAFDL 446


>gi|77405818|ref|ZP_00782902.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           H36B]
 gi|77175605|gb|EAO78390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           H36B]
          Length = 443

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 127/374 (33%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L   L +I  T   IG             R  
Sbjct: 93  HEFLGDFMRQFTSLGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + ++ +FE       E         P  ++IT I   H   F+G+E++ +A  +  + +
Sbjct: 144 ANANYFVFEA-----DEYERHFMPYHPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + +++       IY +G   + DF  +   +    S  +V   
Sbjct: 199 QKG--LFIYGEDPKLHEITSEA------PIYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + +   H    G H   N    +  + I+  D+    + L  F   +      R     
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVK-----RRFTEKI 305

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L +       + 
Sbjct: 306 IDDTVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALSQAD 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y  +    +G   V  L   + +   +   E +  L         D  
Sbjct: 366 SVY-----LAQIYGSAREVDNGEVKVEDLAAKIVKHSDLVTVENVSPLLNH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|76787448|ref|YP_330233.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           A909]
 gi|76798460|ref|ZP_00780698.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           18RS21]
 gi|77408486|ref|ZP_00785224.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           COH1]
 gi|77411925|ref|ZP_00788256.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           CJB111]
 gi|109892745|sp|Q3JZS0|MURC_STRA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76562505|gb|ABA45089.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           A909]
 gi|76586194|gb|EAO62714.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           18RS21]
 gi|77162022|gb|EAO73002.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           CJB111]
 gi|77172928|gb|EAO76059.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           COH1]
 gi|319745510|gb|EFV97812.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           ATCC 13813]
          Length = 443

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 127/374 (33%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T + + G+ GKT+T  +L   L +I  T   IG             R  
Sbjct: 93  HEFLGDFMRQFTSLGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + ++ +FE       E         P  ++IT I   H   F+G+E++ +A  +  + +
Sbjct: 144 ANANYFVFEA-----DEYERHFMPYHPEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D     + +++       IY +G   + DF  +   +    S  +V   
Sbjct: 199 QKG--LFIYGEDPKLHEITSEA------PIYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + +   H    G H   N    +  + I+  D+    + L  F   +      R     
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVK-----RRFTEKI 305

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A +    Q            PH   R IA+L +       + 
Sbjct: 306 IDDTVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALSQAD 365

Query: 387 SFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +     +  +Y  +    +G   V  L   + +   +   E +  L         D  
Sbjct: 366 SVY-----LAQIYGSAREVDNGEVKVEDLAAKIVKHSDLVTVENVSPLLNH------DNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|331680370|ref|ZP_08381029.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
 gi|324118795|gb|EGC12687.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1167]
 gi|331071833|gb|EGI43169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPTHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis YPIII]
 gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis YPIII]
          Length = 438

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 137/376 (36%), Gaps = 54/376 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +   +    G+          L  +  D    
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIGVP-----ALTLLKQDNQLT 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFS---GLPHRFQLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +  +ETM      +  +++ GD V++    +S     
Sbjct: 365 I-KVYCFGRDGGQLAALRPDVSQL--TETMAQAMALVAKAVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|82779294|ref|YP_405643.1| putative ligase [Shigella dysenteriae Sd197]
 gi|309784150|ref|ZP_07678790.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81243442|gb|ABB64152.1| putative ligase [Shigella dysenteriae Sd197]
 gi|308928013|gb|EFP73480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 141/418 (33%), Gaps = 38/418 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            G  R IAVL      M  MG         L           V+L    H+L     +  
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHILWQVAEVAE 401

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           +     H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQPAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 441

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 121/343 (35%), Gaps = 34/343 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I+A++G+ GKTT  ++++  + +  K     G+    +      A    +  F   EL
Sbjct: 99  KKIMAVSGTNGKTTVTDLISKIIKAAHKDSIVSGNIGCPLADK---ALKTTETTFITMEL 155

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               LG+    T   RP I+V+  I P HL     ++    AK  IF          +NY
Sbjct: 156 SSYQLGD----TPDFRPAISVLLNITPDHLEYHKTMKAYLRAKENIFINQRDGDFTVINY 211

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHH 286
           DD     +  K+ A     +  F K+      L+K       S  + V+ +   ++   +
Sbjct: 212 DDKICRKIFEKTKAA----VIFFSKTP-----LKKGVFYDSGSIVINVKEKHYVIKPKIN 262

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N+L  +              K +S +   E    R             ++S 
Sbjct: 263 IVGTHNIENILAAVAASYAAGVKPAVIEKIVSKYKGVE---HRIEFVKTLNGVDYYNDSK 319

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           + N  S + A+    +         + ++G   +    +        + L    +  ++L
Sbjct: 320 STNIDSTRVALESFDK-------NILIIMGGRDKGVPYTP------LKELVKQRVKLIFL 366

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +K  L  +  V     M+     I  + V  D+ ++
Sbjct: 367 IGEASDKIKKDLNGASFVD-CGNMENAVKQIFRTAVRADIALL 408


>gi|114773353|ref|ZP_01450557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
 gi|114546287|gb|EAU49198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
          Length = 468

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 115/376 (30%), Gaps = 44/376 (11%)

Query: 86  FGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD+ +G   +               +I +TGS GK+TT  ++   L    +     G+
Sbjct: 95  VVVDNDVGLFFRSFATQEWDNFDVMPKVICVTGSNGKSTTTALIAHLLEGSNRKVVVAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +           D    + EL    +     L   + P IAV   ++P HL   +G
Sbjct: 155 IGRGVLDIPP----AQDGTIVVLELSSYQID----LARALAPDIAVFINLSPDHLDRHNG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH--ALGIKTIYSFGKSKNADFQL 260
           +     AK  +F          +  D+   + L+ +    A   + + S   +     Q 
Sbjct: 207 MGGYFYAKRRLFIDGNPD-RAIIGVDEIEGQFLENQLRQDAKSGEPVISVSVNSK--LQN 263

Query: 261 RKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             W   S + ++    +G+      +  +    G H  QN      +   +         
Sbjct: 264 NGWSVFSRKGFLAEWRKGRQVASIDLRSMSGLPGEHNHQNACCAYAVCRSIGLAPKLI-- 321

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
                +   G   R +          +++S   N  + K A+     I          V 
Sbjct: 322 -EEKLNSYVGLTHRCQTVGTFNGVMYVNDSKATNVDAAKKALLAFKSI-------LWIVG 373

Query: 376 GDMCEMG--ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           G+  E G   L   F+           I   +L G  V  L   L  SI    + ++   
Sbjct: 374 GESKEAGVLPLKPYFNR----------IKKAYLIGTDVSDLIKDLS-SIDFVIAGSISEA 422

Query: 434 FLFIQSSLVDGDVVVV 449
                      DVV++
Sbjct: 423 VRLASLDAEKNDVVLL 438


>gi|320179650|gb|EFW54599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           ATCC 9905]
          Length = 438

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +     A              L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKA-----AGGNVGVGGNIGLPALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLCIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|237809280|ref|YP_002893720.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
 gi|237501541|gb|ACQ94134.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
          Length = 456

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 142/414 (34%), Gaps = 38/414 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   +  +  +I + G+ GKTTT  M+  
Sbjct: 64  MVVIGNAMSRGNPCVEYVLDRNLPYTSGPEWLRDNVLQQRWVIGVAGTHGKTTTASMVAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    +      L + P    F + E            +  V  RP 
Sbjct: 124 ILEHAGLEPGFLIGGVPGNFPFSARLGKAP----FFVIEADEYDCAFFDKRSKFVHYRPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I +   D     ++       ++
Sbjct: 180 TLIMNNLEYDHADIFPDLASIQRQFHHLVRTVPSNGRILMPAHDPALAEVRTMGCWSEVE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            +    +   A++Q +  K+  + S   V L G+    VH  G+G H   N LM +    
Sbjct: 240 LV----EGDGANWQAKLLKE--DGSAFVVLLNGEVQGEVHWSGLGRHSVHNGLMAIAAAR 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                    I ALS F   +   +R           + D+ +  +P ++   I+ L   +
Sbjct: 294 HAGVRTADGIAALSEFVMPK---RRMELRGEVAGIKVYDD-FAHHPTAIATTIAGLR--A 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLS-----GFHVLALKDAL 418
             G  R +AVL    E    +    +   E++ SL      ++      G+ +  L    
Sbjct: 348 NVGTARILAVL----EPRSNTMKMGVHQGELIKSLVQADKAYMFAPTGLGWDIHQLAQKA 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEF 468
           P    V +   ++ L   + +    GD ++V  SN  GF     +L+  L + +
Sbjct: 404 PIPTTVQH--DINHLVDMLVAEAKSGDQILVM-SNG-GFDGIHSKLLEKLTKRY 453


>gi|194433904|ref|ZP_03066177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|194417885|gb|EDX33981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|332083669|gb|EGI88887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|89891766|ref|ZP_01203269.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89516101|gb|EAS18765.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 455

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 134/408 (32%), Gaps = 62/408 (15%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +    D +       +P+     +LG +++           T +A+ G+ GKTTT  +L
Sbjct: 81  AIPATMDELIRFRESGVPILKRAQLLGQISQ---------TMTCLAVAGTHGKTTTSAIL 131

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L    K+   + ++   I        +    D  + E        ++     + P +
Sbjct: 132 AHLL---YKSDVKVTAFCGGILEEYNTNYLCSGTDVMVVEADEFDRSFMQ-----LSPDV 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A IT +   HL  +  +          F  L +  T+ +N           +    GIK 
Sbjct: 184 AGITAMDADHLDIYGDVATFEQTF-HDFAALLENKTLIVN----------EQVIIDGIKV 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSI 305
               GK     +Q             ++++     +       G H   N L+ L +   
Sbjct: 233 GLKQGK-----YQAINIVIAGGAYHFDLRVDKAVYKGFCLQLPGKHNLSNALLALAMAIE 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++    AL  F   E   +R+   +N     LID+ Y  +P  + A    + ++ P
Sbjct: 288 YGVAIEALKLALVTFKGVE---RRFTYRVNTAERVLIDD-YAHHPTEVNAVHQAVREMYP 343

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHVWLSGFHVLALK- 415
               + +A+      +   ++ F  +            +L +Y    + + G     L  
Sbjct: 344 QE--KVLAIF--QPHLFSRTKDFMEEFVSSLAQFDQLALLDIYPARELPIEGITSQVLCN 399

Query: 416 -----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                DA P  ++V   E +      + + +    VV++  +   G  
Sbjct: 400 KIQKLDAKPSVVNVLDKEDIAEFIDEMNTRV----VVMI-GAGDIGVE 442


>gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis PB1/+]
 gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 438

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 136/376 (36%), Gaps = 54/376 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +   +    G+          L  +  D    
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIGVP-----ALTLLKQDNQLT 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CIVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFS---GLPHRFQLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +  +ETM      +   ++ GD V++    +S     
Sbjct: 365 I-KVYCFGRDGGQLAALRPDVSQL--TETMAQAMALVAKVVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|307312991|ref|ZP_07592619.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|306907159|gb|EFN37666.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|315063544|gb|ADT77871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|323380377|gb|ADX52645.1| UDP-N-acetylmuramate [Escherichia coli KO11]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++AI G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAIAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|307132585|ref|YP_003884601.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
 gi|306530114|gb|ADN00045.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
          Length = 437

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 132/347 (38%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 100 REAQAPIVAITGSNGKSTVTTLVGEMAHAAGWAVGVGGNIGVP-----ALELLKQESQLY 154

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ +    A I  +   H + +  G+++  +AK  I+E  +    
Sbjct: 155 VLELSSFQL----ETTYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAK---V 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V+ +     
Sbjct: 208 CIVNADDALTMPVRGADA-----RCLSFGVDVG-DYHLNRQQ---GETWLRVKGERVLNT 258

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ AL +     +
Sbjct: 259 REIKLVGQHNYTNALAALALADAVGIPRSSALIALTSFT---GLPHRFQLALARHDVRWV 315

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L     H +G    +LG   +  + S      L   L    I 
Sbjct: 316 NDSKATNVGSTEAALSGL-----HVDGTLHLLLGGDGKSADFSP-----LLRYLQGDRI- 364

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I S    GD+V++
Sbjct: 365 RLYCFGRDGGQLAALRPE--IAEQTETMEQAMRLIASRAQPGDMVLL 409


>gi|187477730|ref|YP_785754.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422316|emb|CAJ48840.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 857

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 133/382 (34%), Gaps = 46/382 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLTL 153
             ++  IIA+ G+ GKTTT  +    L+   K      S   +I            P + 
Sbjct: 466 DDARVPIIAVAGTNGKTTTVRLSAHILAVSGKRVGMTNSDGVYIGTRRIDTGDCSGPRSA 525

Query: 154 AR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AH--LSNFSGIEEIAS 208
            R  +  DVD  +FE   +  G +R      R  +A++T I    H  L   + +EE+A+
Sbjct: 526 RRILLHPDVDAAVFE--TARGGILREGLAFDRCDVAIVTNIGMGDHLGLGYITTVEELAA 583

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAK--------SHALGIKTIYSFGKSKNADFQL 260
            K  I + +   G   LN  D+    + +         +       I +           
Sbjct: 584 VKRVIVQYVRNKGMAVLNAADTHVAAMASVCPGDVTFFAPDRNHPIIATHRAQGRRVVYR 643

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 + +   EV++    + +   G      +N +  +G    L  D  T  +AL+ F
Sbjct: 644 EDDDIVAAEGGEEVRIPLAQIPLTRDGAITFQVENAMACIGAAWGLGIDWATIRQALASF 703

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                         + G  TLI + Y  NP +++A ++ +  +    + R + + G    
Sbjct: 704 VNDAQTAPGRFNVFDYGGATLIAD-YGHNPDAIEALVAAIEALPA--KRRSVVISG---- 756

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETM 430
            G+          E+L  Y    V L           G  +  L+  L ++      E +
Sbjct: 757 AGDRRDEDLRRQTEILGDY-FDDVLLYEDQCQRGREDGEVIALLRQGLTQAKRASRIEEI 815

Query: 431 DG---LFLFIQSSLVDGDVVVV 449
            G          SL  GD+ ++
Sbjct: 816 RGEFIAIDRALESLSPGDLCLI 837


>gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
 gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
          Length = 879

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 162/496 (32%), Gaps = 76/496 (15%)

Query: 29  GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQK--------GAGLVVVNTDMVASIG 79
           GI+ID +  I P  A  A++     G D     +          G    ++  +    I 
Sbjct: 391 GIAIDRTDKIHPYNADLALRAARIIGLDVAGIDITALDIDVPLDGVNGAIIEINAAPGIR 450

Query: 80  SLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               P  G   +   A+  +      RS   I+++TGS GKTTT  ++   L +      
Sbjct: 451 MHHYPYKGKPRNAAKAIIDMLYPQGQRSSIPIVSVTGSNGKTTTVRIIAHMLRTQGLNVG 510

Query: 139 CIGSYNNHIGVPLTLARMP------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              +   +I     +                  V+  + E   +  G IR         +
Sbjct: 511 MTTTGGIYINDECIMKGDTTGPASAQIILSDKSVEAAVLE--TARGGIIRSGLGYDLSDV 568

Query: 187 AVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            VIT I   HL       +E++   K+ I E ++  G   LN DD+       +      
Sbjct: 569 GVITNITGDHLGIDGIHTLEDMLHVKSLIVEAVKDNGYAVLNADDAISVQAARRVRC--- 625

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGK---------SMEVVHHGIGYH 291
             +  F  ++N      +        +++    V   G+          +     G   +
Sbjct: 626 -NLIYFSFNQNNILIQHQIDNGRPAVYLKDDYIVLFDGENIYNVIAVDEIPATWEGKLTY 684

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N +  +     +   V    KAL  F+    +        N   F +I + Y  N  
Sbjct: 685 NIENSMAAVAAGYGIKVPVSVMEKALRTFYSDSLQNPGRFNIFNVRDFRVIVD-YAHNVE 743

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----- 406
           S K+ IS L Q++P    R I V+G     G+      I++   ++ Y    + +     
Sbjct: 744 SYKSVISALKQMNP---ARLIGVIGAP---GDRRDEDIIEMGR-IAGYGFDRIIIKEDIE 796

Query: 407 -----SGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                +G     L+           S+++  SET              GD+V+V      
Sbjct: 797 LRGRQTGEVSRLLQQGALRAGMPKSSMNIILSET--DAISAAMGQAQPGDIVIV-----F 849

Query: 456 --GFYRLINLLLEEFP 469
                 +++ + +  P
Sbjct: 850 YERLEPILDAIKKASP 865


>gi|293407957|ref|ZP_06651797.1| ligase [Escherichia coli B354]
 gi|301024464|ref|ZP_07188143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|291472208|gb|EFF14690.1| ligase [Escherichia coli B354]
 gi|300396577|gb|EFJ80115.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|332748971|gb|EGJ79394.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-671]
 gi|332749250|gb|EGJ79671.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 4343-70]
          Length = 445

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 445


>gi|53802547|ref|YP_112695.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylococcus capsulatus str. Bath]
 gi|53756308|gb|AAU90599.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylococcus capsulatus str. Bath]
          Length = 454

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 129/382 (33%), Gaps = 30/382 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +   +     ++A+ G+ GKTTT  ML   L          IG    + G+   + 
Sbjct: 91  GAQWLYNHVLKGRWVLAVAGTHGKTTTSSMLAWILEHDGHKPGFLIGGVPLNFGISARIG 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               +  F + E            +  V  RP   ++  +   H   F  +  I      
Sbjct: 151 ----EGRFVVVEADEYDTAFFDKRSKFVHYRPRTTILNNLEYDHADIFPDLAAIQRQFHH 206

Query: 213 IFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +   +   G + +   D++  E+L+        KT    G    AD+Q     +  + S 
Sbjct: 207 LVRSVPGNGLLVVPERDENLAEVLRMGCWTPVEKTAL--GPDTAADWQAHPLAE--DGSR 262

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V  +GK    +H    G H   N L  +        +   AI ALS F   +   +R 
Sbjct: 263 FDVVFRGKRQGTIHWQLSGRHNMLNALSAIAAAHHAGIEPAAAISALSRFQSVK---RRL 319

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-- 388
                    TL D+ +  +P ++   +  L   +     R IAV+    E    +     
Sbjct: 320 EVRAEVRGITLYDD-FAHHPTAIATTLEGLR--ARVDGARVIAVV----EPRSNTMRMGV 372

Query: 389 HID-LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H D LA  L+  +++ ++ +      L      S  +   +++  +   ++     GD V
Sbjct: 373 HADTLAASLAPADLAILYQAPDLGWDLAKVSSASDRIVTCDSIGAIVERLRQECRAGDHV 432

Query: 448 VVK--SS-NSCGFYRLINLLLE 466
           V     S       +    L E
Sbjct: 433 VFMSNGSFGGVH-EKTEAALRE 453


>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 449

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 114/363 (31%), Gaps = 48/363 (13%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   ++A ++ ITGS GKTTT  +    L++        G+    +   +         
Sbjct: 94  FAGRHTEAKMVCITGSNGKTTTTLLTCHILTTAGIDAGLAGNVGRSLAAQV----AEDAH 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219
              + EL    L  +       R  IAV+T I P HL  +    E    +K  I   +  
Sbjct: 150 PLYVVELSSFQLDGM----FDFRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRP 205

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----V 274
                   D         +   +     + +     AD  + +   C   +WME     V
Sbjct: 206 QDLFIYGLDSEAVGHRLRQVRVVPRMAGFIY-----ADRSIWEKNTCRSGAWMEGEEVVV 260

Query: 275 QLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           QL+ +   +    I   G H   N +  +     +    +   + L  F   E R +  R
Sbjct: 261 QLENRQFRIAKQEISIQGRHNVYNAMAAILACMQVGVSDEKIAEGLRTFPQVEHRLETVR 320

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ-----ISPHGEGRRIAVLGDMCEMGELSQ 386
                   T I++S   N  S   A+  ++           +G   +VL D         
Sbjct: 321 VVE---GVTYINDSKATNVDSAWYALDSMTTPVIWIAGGTDKGNDYSVLFD--------- 368

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                    L    +  +   G     L D       V  + ++       +   V+GD 
Sbjct: 369 ---------LVRQKVKVLICMGVDNRKLIDNFSGICQVVDTHSLKDALAAARQYAVEGDT 419

Query: 447 VVV 449
           V++
Sbjct: 420 VLL 422


>gi|225075298|ref|ZP_03718497.1| hypothetical protein NEIFLAOT_00301 [Neisseria flavescens
           NRL30031/H210]
 gi|224953473|gb|EEG34682.1| hypothetical protein NEIFLAOT_00301 [Neisseria flavescens
           NRL30031/H210]
          Length = 472

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 125/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 121 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDSNSKSPFF 180

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 181 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFNHADIFADLGAIQTQFHHLVRTVPSEG 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 241 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG-----WQVGEVNADGSFDVLLDGKKA 292

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 293 GHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVK---RRMEIKGTVNGIT 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 350 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKAALPE------ 399

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL +   V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 400 SLKDADQVFCYAGGVDWDVAEALAPLGGKLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 458

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 459 -GFGGIHGKLLEALK 472


>gi|238792997|ref|ZP_04636626.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
 gi|238727597|gb|EEQ19122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
          Length = 461

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 126/358 (35%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M+T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMVTWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  ++ I      +   +  TG I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L  K + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVFLDNKLVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A KAL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVSPADACKALGNFINAR---RRLELRGEANGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    ++S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAYWSADIDTLVDMIVKTAQPGDHILVM-SNG 436


>gi|238060680|ref|ZP_04605389.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
 gi|237882491|gb|EEP71319.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
          Length = 484

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 137/424 (32%), Gaps = 54/424 (12%)

Query: 53  GHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           GHD    A  +GA  VV      +   V +  +  IPV     VL  L            
Sbjct: 65  GHD---AAYVEGASCVVHTTGARHAPEVRAARAAGIPVVRRAQVLDKLAD---------G 112

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++A++GS GK+TT  ML   L ++ +        +    +   L         G   L
Sbjct: 113 RRLVAVSGSHGKSTTAGMLVHILRTLGQ--------DPTYLIGADLTGPGSGAHLGRSRL 164

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            ++   E     HL+ P +AV+T +   H S      ++  A  E    +   G + +N 
Sbjct: 165 LVAEADESYRSFHLLSPSLAVVTNVTDDHPSFV-SRADVLRAYVEFGCRVAPDGFLIVNA 223

Query: 228 DDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
           D     +     +       +   G+ + AD +L             V++  G    +  
Sbjct: 224 DCVGATVAAQVIADERPDLMVLRCGRDRAADVRLLDVHAEGWSVSATVRMPNGTETRLTL 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                H   +    +     L  D      A+  F    G  +R+     +   T+I +S
Sbjct: 284 PTPATHHLHDAAAAVACAVALGLDPADVTAAVGTF---AGVRRRFEHIDTRAGVTVI-DS 339

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGE---LSQSFHIDLAEVLS 397
           Y ++P  + A +     ++    GR   V        +  +GE      +    +  VL+
Sbjct: 340 YASHPNEIAADLQAARTLA---RGRVFVVFQPSGHARVLALGERIGRVLALDERIGRVLA 396

Query: 398 LYNISHVWLS--------GFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVV 447
             N  +V L         G  +        R     Y   +  D     I      GDVV
Sbjct: 397 D-NADYVLLLDVPDNLSDGRPLADTDAIAARLRDGAYCLPLGPDHAARVIARMAGRGDVV 455

Query: 448 VVKS 451
           +   
Sbjct: 456 LTMG 459


>gi|325204179|gb|ADY99632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M01-240355]
          Length = 458

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTT   ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTIASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +    L E  
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKSALPESLKE-- 389

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 390 ----ADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 464

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/456 (14%), Positives = 147/456 (32%), Gaps = 60/456 (13%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +  +S+ +   + F ++KG    G  ++       A  +++++     +      V  
Sbjct: 12  ENVVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDSSETIDLPK----VIK 63

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + D+     +          S    + ITG+ GKT+T   L+    S    +A  G+   
Sbjct: 64  IKDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKHASSGTLGT 123

Query: 146 HIGVPLTLARMPVDVDFG-----------------IFELGMSHLGEIRFLTHLVRPHIAV 188
            I             +                   IFE     +G  +     ++   A+
Sbjct: 124 FINDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASS--IGVDKNRLRGLKIDHAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T I+  HL     +++   AK ++     K  T+ +N+DD        K ++    TI 
Sbjct: 182 FTNISRDHLDYHGSLKKYIDAKFKLISN-SKAKTVAVNFDDEIISRHLRKMYSKETFTIS 240

Query: 249 SFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           S  K+  +D   R  K   + +     +      +            N+ ++L     + 
Sbjct: 241 S--KNIESDIFFRVLKFYEDGNIEFLAETPWGKFQAASKIESKFNLYNLFLSLPYFQYVN 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +     +       GR  +            I   Y  +P ++++   V   +    
Sbjct: 299 NDCEDFFAQVENLSLPYGRLNKTEKEN-------IYIDYAHSPKALES---VCKYLYKKK 348

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422
           + + I V G   E  E  +     + E+   Y    ++++           + D +   I
Sbjct: 349 KNKLIIVFGAGGERDEGKR---YQMGEIADKY-CEKIYVTSDNPRNEDPRQIADMIIDGI 404

Query: 423 HVHYSETMD-----GLFLFIQSSLVDGDVVVV--KS 451
                  ++      +   I + L + D++++  K 
Sbjct: 405 KGTDKICIELDRSCAIKNAI-NELGEEDILLIAGKG 439


>gi|300818544|ref|ZP_07098753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300916600|ref|ZP_07133322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300922863|ref|ZP_07138946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300928056|ref|ZP_07143606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300987091|ref|ZP_07177998.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300988332|ref|ZP_07178628.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|301048563|ref|ZP_07195580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|301329268|ref|ZP_07222245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301646689|ref|ZP_07246552.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|309792871|ref|ZP_07687299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312965914|ref|ZP_07780140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|300299607|gb|EFJ55992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|300305950|gb|EFJ60470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|300407786|gb|EFJ91324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300416112|gb|EFJ99422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300420812|gb|EFK04123.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300463903|gb|EFK27396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300528948|gb|EFK50010.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300844428|gb|EFK72188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301075097|gb|EFK89903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|308123157|gb|EFO60419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312289157|gb|EFR17051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|315288404|gb|EFU47802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 110-3]
 gi|315298998|gb|EFU58252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 16-3]
 gi|324005176|gb|EGB74395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 57-2]
 gi|324013743|gb|EGB82962.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 60-1]
          Length = 445

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 445


>gi|260584179|ref|ZP_05851927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
 gi|260158805|gb|EEW93873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
          Length = 453

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 120/347 (34%), Gaps = 41/347 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           II ITGS GKTTT  + ++ L           + N  I +   LA      D  + EL  
Sbjct: 114 IIGITGSNGKTTTTTLSSLMLKESFPERDVYAAGNIGIPLSQ-LAEQSTKEDIYVSELSS 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I       +P IA I  I  AHL      EE   AK ++ +   +   +  N D 
Sbjct: 173 FQLMGID----QFKPKIACIVNIFSAHLDYHGSREEYIKAKLQLTKNQTEDDYLVYNADY 228

Query: 230 S-FFELLKAKSHA----LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                L++  ++A       K    FG S   D+     ++    S ++V          
Sbjct: 229 PELITLIEEHTNATLVPFSRKNSLEFGASVEGDYICFNGEKVIPVSTIQV---------- 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G    +N+L  + I  +  A  +   KA+  FH  +    R +           ++
Sbjct: 279 ---PGTQNVENVLAAVAIAKLAGATNEGIKKAVQNFHGVK---HRTQFVKEVNKRRFYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A+   +  S       I + G   + G        DL        +S +
Sbjct: 333 SKATNIIATQTALRSFTNQSV------ILIAGG-LDRGNGFDELIPDL------TAVSGI 379

Query: 405 WLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L++A   +    +    T++           + D++++
Sbjct: 380 VLYGETKEKLQEAAKVAGIPVIEVVNTLEEATKKAYEISKENDIILL 426


>gi|83648524|ref|YP_436959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
 gi|118595658|sp|Q2S9Z0|MURD_HAHCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83636567|gb|ABC32534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 131/346 (37%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++     +     A  G+    +     L  +  +V+  
Sbjct: 104 REANAPILAITGSNGKSTVTTLVGEMAKACGVNVAVGGNLGTPV-----LDLLADEVELY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L  L     A +  ++  H+  ++ +     AK  +F G  +    
Sbjct: 159 VVELSSFQLETTDRLGALA----ATVLNLSEDHMDRYADMMAYHLAKLRVFYGCRRQ--- 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+  +   ++   +   T ++    +   + + + K   + +W+    +      
Sbjct: 212 VLNRDDALAQPPLSREAEI---TWFTLKTPEPGQYGVLEEK---DGAWLAYGAEKLLPVE 265

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +      + +  ++AL  F    G   R     ++     I+
Sbjct: 266 QMRIRGKHNWSNALAALALADAAGLEREPCLQALREFT---GLTHRCEWVADKDGVAYIN 322

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  + +AA   L+ + P   G  + + G   +  + +      LA  +  + +S 
Sbjct: 323 DSKATNVGATQAA---LAGLGPVTSGGIVLICGGQGKGQDFTP-----LAPAVKEW-VST 373

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + + G     LK+AL   +    +ETM+            GD+V++
Sbjct: 374 LIIIGEDGPKLKEALAGGVMALSAETMEEAVKLAAEKSSPGDLVLL 419


>gi|146310298|ref|YP_001175372.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           sp. 638]
 gi|145317174|gb|ABP59321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter sp.
           638]
          Length = 438

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A +IAITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 101 REAQAPVIAITGSNGKSTVTTLVGEMAKAAGINVGVGGNIGLP-----ALMLLDQDRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTSSLHAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---AKV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADERCVSFGINMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L+   
Sbjct: 315 WINDSKATNVGSTEAALNGLR-----VDGTLYLLLGGDGKSADFS-----SLKPYLTGDK 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P       +ETM+     I  ++  GD+V++
Sbjct: 365 I-RLYCFGRDGAELAALRPE--IATQTETMEQAIRLIAPAVQPGDMVLL 410


>gi|300899372|ref|ZP_07117631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
 gi|300357032|gb|EFJ72902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
          Length = 445

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLPKKAEAAQ 445


>gi|207092786|ref|ZP_03240573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 447

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 135/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHKSIENYRDAKNSFF---KDEGLKVINRDETNALFNPINAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLTPSISASLCYQQDLRDPNLKEIAL------IHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++T    L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLETIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    +  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GINDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|255015706|ref|ZP_05287832.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides sp. 2_1_7]
          Length = 462

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 150/456 (32%), Gaps = 60/456 (13%)

Query: 43  FFAIKGPHYDG-----HDFILHAVQKGA------GLVVVNTDMVASIGSLSIPVFGVDDV 91
           F A KG    G      D      ++GA       + ++     +   +L +    V + 
Sbjct: 26  FLA-KGKRVGGYDKTPSDLTEELKKEGADIHYEDNVALIGEAFKSPDDTLVVYTPAVPES 84

Query: 92  LGALNKLAVAARL-RSKATIIA----------ITGSVGKTTTKEMLTIALSSIKKTYACI 140
              L            +A ++           + G+ GKTTT  ML   L        C 
Sbjct: 85  HTELTYFRAHGFEVMKRARVLGEITKSSRGLCVAGTHGKTTTSSMLAHLLKQS--PVDCN 142

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                 +    +   +    DF + E       E     H + P++AVIT+  P HL  +
Sbjct: 143 AFLGGILKNYESNLMLSDTSDFTVIEA-----DEFDRSFHWLTPYMAVITSADPDHLDIY 197

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E    +  +    +   G + +    +    L+           Y++  ++ ADF  
Sbjct: 198 GTAEAYRESFEKFTSLIRPDGCLLIKKGINVTPRLQEGVKE------YTYSVTEIADFYA 251

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              + C      +       +  V  G+      +N +  + I  +     +   K ++ 
Sbjct: 252 ENIRICDGNITFDFVGPEIRIPDVELGVPVKVNIENGVAAMAIAWLNGVKPEDLKKGIAT 311

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G  +R+   L      LID+ Y  +PA ++ +I  + ++     GR++  +    
Sbjct: 312 F---AGPRRRFDFHLKTDQVVLIDD-YAHHPAELRQSILSVKEL---YAGRKVTGIFQ-P 363

Query: 380 EMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            +   ++ F  D A          +L +Y      + G     + D +            
Sbjct: 364 HLYTRTRDFAGDFAASLSLLDELILLDIYPAREEPIPGVSSRIIFDKVTIPSKTLCK--K 421

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + L   + +     +VV++  + +    RL+  + E
Sbjct: 422 EELLDVVAA--GKYEVVLMVGAGNI--DRLVEPVKE 453


>gi|222053879|ref|YP_002536241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
 gi|254766051|sp|B9M170|MURD_GEOSF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221563168|gb|ACM19140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
          Length = 453

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 141/403 (34%), Gaps = 45/403 (11%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            +D H F++        L+VV+  +   I     P+         +      A    KA 
Sbjct: 60  RHDKHTFLMS------DLIVVSPGVPMDIS----PLLMAKAQRRVVISEIELAAAFIKAP 109

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITG+ GKTTT  +      +        G+  N +   +T      DV   + EL  
Sbjct: 110 MVAITGTNGKTTTTTLAGEIFKACGVETFVGGNIGNPLIELVTSGN---DVAQVVVELSS 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I+      RP +AV+  I   HL  ++  ++   AK  IFE         LN DD
Sbjct: 167 FQLEGIQRF----RPKVAVLLNITEDHLDRYASYQDYIDAKLRIFENQTVDDFAVLNVDD 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288
                L A   A     ++ F + K     L +   CS+   +  + QG  +        
Sbjct: 223 P----LVAACAATVKSRVFPFSQRKE----LAEGIFCSKG-IIVYRWQGSELRFDTAAFK 273

Query: 289 --GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N++  L    +  AD    IKA       +G   R       G     ++S 
Sbjct: 274 LKGVHNIENIMAALASTLLSGADP---IKAGRAVESFKGLRHRMEFIREVGGVAYYEDSK 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+  ++    +           + G   + G  +      LA+++    + H+ L
Sbjct: 331 GTNVGSVVKSLESFDKG-------ITLIAGGKDKGGSYAP-----LADLVRER-VKHLIL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     ++  L      H + T++            G+VV+ 
Sbjct: 378 IGEAKERIEAELGNLTDTHKAATLEDAVAIAHRLAKAGEVVLF 420


>gi|24115458|ref|NP_709968.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30065479|ref|NP_839650.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157163707|ref|YP_001461025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli HS]
 gi|24054776|gb|AAN45675.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30043743|gb|AAP19462.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157069387|gb|ABV08642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli HS]
 gi|281603567|gb|ADA76551.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Shigella flexneri 2002017]
 gi|313646431|gb|EFS10893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
 gi|323171673|gb|EFZ57319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|332763144|gb|EGJ93387.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2930-71]
 gi|333009274|gb|EGK28730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-218]
 gi|333011919|gb|EGK31304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-304]
 gi|333012112|gb|EGK31494.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|331671380|ref|ZP_08372178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
 gi|331071225|gb|EGI42582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPSHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFAGIHQKLLDGLAKKAEAAQ 457


>gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda
           FL6-60]
          Length = 438

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 153/422 (36%), Gaps = 48/422 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
            ID+R+  P           + G   I  +    A L+V +  +  S  +L        +
Sbjct: 34  VIDTRATPPGLDKLPASVERHLGS--IEQSWLMDADLIVASPGIPLSSPALDRAAQAGVE 91

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           ++G +      A    +A I+AITGS GK+T   ++     +        G+        
Sbjct: 92  IVGDIELFCREA----QAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGVP---- 143

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
             L+ +  +    + EL    L      T  +R   A I  ++  H++ +  G+++  +A
Sbjct: 144 -ALSLLKHECRLYVLELSSFQL----ETTSSLRAAAATILNVSEDHMNRYPLGLQQYRAA 198

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  I+E      T  +N DD+    +             SFG        +  +    +Q
Sbjct: 199 KLRIYENAR---TCVVNADDALTMPIHG-----ADTRCVSFGVD------VGDYHLNRQQ 244

Query: 270 SWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             + ++++G+ +         G H   N L  L +   +     ++++AL+ F    G  
Sbjct: 245 GEIWLRVRGEKILNTKEMQLTGMHNYTNALAALALADAVGLPRASSLRALTTF---RGLA 301

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R++  L       I++S   N  S +AA+  L     H +G    +LG     G+   +
Sbjct: 302 HRFQLVLEHSGVRWINDSKATNVGSTEAALKGL-----HLDGTLHLLLG-----GDGKDA 351

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               L   L    I  ++  G     L    P        +T++     +      GD+V
Sbjct: 352 DFTPLLPYLQGDRI-RLYCFGRDAEPLMRLRPEVSRR--FDTLEQAIRALAPLTRGGDMV 408

Query: 448 VV 449
           ++
Sbjct: 409 LL 410


>gi|114570630|ref|YP_757310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Maricaulis
           maris MCS10]
 gi|114341092|gb|ABI66372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maricaulis maris
           MCS10]
          Length = 474

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 127/391 (32%), Gaps = 48/391 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              MV    ++  PV G  ++   AL  L      + +  +I ITG+ GK+TT  ++   
Sbjct: 82  PHHMVELARAVEAPVIGDIELFAQALADLP----EKRRPKVIGITGTNGKSTTTALIGHI 137

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L +  +     G+  + I         P    + + EL    L     LTH +   +AV+
Sbjct: 138 LRATGRNVVVGGNIGDAILAQSP----PRPGSYYVLELSSYQLD----LTHTLACDVAVL 189

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIK 245
             + P H+      +    AK  +FE  +  G   +  DD    +++  L+ +     + 
Sbjct: 190 LNVTPDHIDRHGDFDGYFRAKKRLFEMQKPGGLAVVGIDDNTTSAYYSALRRQRREEEVI 249

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I             R      ++ +  +         +  V    G H AQN    L  
Sbjct: 250 PI------SAGRVFARGVYALGDRVYDALDCASHPIVDLAKVPTLPGRHNAQNAAAALAT 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L      A  A++ F     R +R          T +++S   N  +   A+    +
Sbjct: 304 VRALGVAGRAAADAITTFPGLPHRQERVATI---NGVTYVNDSKATNAEAAVQALGCYER 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDAL 418
           +     GR  A       +      FH           ++  +L G         L   L
Sbjct: 361 VRWIIGGRAKA-----GGLSAAKPQFHR----------VAKAYLIGEASESFGRELDGEL 405

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           P       +  +        +    G V+++
Sbjct: 406 PNESCGDLAGAIAAATRDALAEGGSGQVILL 436


>gi|157363503|ref|YP_001470270.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
 gi|189082509|sp|A8F4X2|MURC_THELT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157314107|gb|ABV33206.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
          Length = 445

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 125/369 (33%), Gaps = 52/369 (14%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
              L +  T  A+TGS GKTTT  ML   L  + +       +   I   L         
Sbjct: 94  YDILNNGKTQFAVTGSDGKTTTTAMLAHCLKVLGED---PTVFLGGIHRSLEFGNYRPGK 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEK 219
              ++EL  S     RF      P   +IT     HL       +        +     K
Sbjct: 151 GPYVYELDESQPEFSRF-----SPDYMIITNARGDHLENYSGDRQLYRDCFRSVVMSTRK 205

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +  +    +D     L            ++FGKS N+  +L    +     + ++++ GK
Sbjct: 206 S--VVTFSEDENTSDLG----------TWTFGKSINSTCRLIDRNRNGLFQFAKIEINGK 253

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGF 338
              +     G H   N +  + ++     +V+  +KAL  F    G  +R+    +++  
Sbjct: 254 EYNLTLKVPGEHNILNAMAVITLLWSAGHEVEEVLKALEDFT---GTYRRFTVTVIDEKR 310

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD------MCEMGELSQSFHIDL 392
              + + Y   P  +K+ +S   ++ P    +R+ +         M E G  +++     
Sbjct: 311 KVYMIDDYAHTPDEIKSLLSTTREVFPSQ--KRVVIFQPHRYSRLMREDGNFAKAL---- 364

Query: 393 AEVLSLYNISHVWLSGFH------VLALKDAL-PRSIHVHYSETMDGLFL--FIQSS--- 440
            +      I+ V+ +            + D L        Y    D L     +Q +   
Sbjct: 365 -KDADEIYITEVYSAFEQTIPQISSKVIADGLVSYGKKAQYVADADLLIENFQLQENTIY 423

Query: 441 --LVDGDVV 447
             +  GD++
Sbjct: 424 LFVGAGDII 432


>gi|15804823|ref|NP_290864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 EDL933]
 gi|26251138|ref|NP_757178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli CFT073]
 gi|91213786|ref|YP_543772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UTI89]
 gi|110644594|ref|YP_672324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 536]
 gi|117626579|ref|YP_859902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli APEC O1]
 gi|157156216|ref|YP_001465741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli E24377A]
 gi|168751077|ref|ZP_02776099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|168754809|ref|ZP_02779816.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|168766518|ref|ZP_02791525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|168774050|ref|ZP_02799057.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|168782754|ref|ZP_02807761.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|168784877|ref|ZP_02809884.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|168797807|ref|ZP_02822814.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|191167263|ref|ZP_03029081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|191170715|ref|ZP_03032267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|193063713|ref|ZP_03044801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194426549|ref|ZP_03059103.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194437852|ref|ZP_03069947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|195937258|ref|ZP_03082640.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208808759|ref|ZP_03251096.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208812704|ref|ZP_03254033.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208820356|ref|ZP_03260676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209400781|ref|YP_002273775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|215489578|ref|YP_002332009.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218556783|ref|YP_002389697.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218692621|ref|YP_002400833.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|218702934|ref|YP_002410563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|227886714|ref|ZP_04004519.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|237703908|ref|ZP_04534389.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|253775142|ref|YP_003037973.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037252|ref|ZP_04871329.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|254164161|ref|YP_003047271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|254796252|ref|YP_003081089.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019885|ref|ZP_05433750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Shigella sp. D9]
 gi|256025171|ref|ZP_05439036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia sp. 4_1_40B]
 gi|260847066|ref|YP_003224844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260858385|ref|YP_003232276.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|260870988|ref|YP_003237390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261225353|ref|ZP_05939634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255394|ref|ZP_05947927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285646|ref|YP_003502464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293417735|ref|ZP_06660357.1| ligase [Escherichia coli B185]
 gi|293476535|ref|ZP_06664943.1| ligase [Escherichia coli B088]
 gi|297520974|ref|ZP_06939360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli OP50]
 gi|301028065|ref|ZP_07191346.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|306815549|ref|ZP_07449698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|331650364|ref|ZP_08351436.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331656068|ref|ZP_08357056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331660813|ref|ZP_08361745.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331665902|ref|ZP_08366796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331681256|ref|ZP_08381893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332281024|ref|ZP_08393437.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12519234|gb|AAG59430.1|AE005655_9 putative ligase [Escherichia coli O157:H7 str. EDL933]
 gi|26111570|gb|AAN83752.1|AE016771_263 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli CFT073]
 gi|91075360|gb|ABE10241.1| putative ligase [Escherichia coli UTI89]
 gi|110346186|gb|ABG72423.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 536]
 gi|115515703|gb|ABJ03778.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli APEC O1]
 gi|157078246|gb|ABV17954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E24377A]
 gi|187770281|gb|EDU34125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|188014851|gb|EDU52973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|188999815|gb|EDU68801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|189357847|gb|EDU76266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|189364179|gb|EDU82598.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|189374729|gb|EDU93145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|189379452|gb|EDU97868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|190902716|gb|EDV62447.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|190908939|gb|EDV68526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|192930700|gb|EDV83306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194415288|gb|EDX31556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194423348|gb|EDX39340.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|208728560|gb|EDZ78161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208733981|gb|EDZ82668.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208740479|gb|EDZ88161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209162181|gb|ACI39614.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|209749718|gb|ACI73166.1| putative ligase [Escherichia coli]
 gi|209749720|gb|ACI73167.1| putative ligase [Escherichia coli]
 gi|209749722|gb|ACI73168.1| putative ligase [Escherichia coli]
 gi|209749724|gb|ACI73169.1| putative ligase [Escherichia coli]
 gi|209749726|gb|ACI73170.1| putative ligase [Escherichia coli]
 gi|215267650|emb|CAS12107.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218363552|emb|CAR01207.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218372920|emb|CAR20802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|218430185|emb|CAR11043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|222036006|emb|CAP78751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminop
           [Escherichia coli LF82]
 gi|226840358|gb|EEH72360.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|226901820|gb|EEH88079.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836287|gb|EEJ46753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|242379755|emb|CAQ34582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|253326186|gb|ACT30788.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976064|gb|ACT41735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|253980220|gb|ACT45890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|254595652|gb|ACT75013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257757034|dbj|BAI28536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257762213|dbj|BAI33710.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257767344|dbj|BAI38839.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281181332|dbj|BAI57662.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE15]
 gi|290765519|gb|ADD59480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320988|gb|EFE60430.1| ligase [Escherichia coli B088]
 gi|291430453|gb|EFF03451.1| ligase [Escherichia coli B185]
 gi|294492555|gb|ADE91311.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IHE3034]
 gi|299878838|gb|EFI87049.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|305851211|gb|EFM51666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|307556405|gb|ADN49180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ABU 83972]
 gi|307629309|gb|ADN73613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UM146]
 gi|312948886|gb|ADR29713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|320190635|gb|EFW65285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. EC1212]
 gi|320200638|gb|EFW75224.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli EC4100B]
 gi|320638992|gb|EFX08638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. G5101]
 gi|320644361|gb|EFX13426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. 493-89]
 gi|320649679|gb|EFX18203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. H 2687]
 gi|320655075|gb|EFX23036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660582|gb|EFX28043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665851|gb|EFX32888.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|323157567|gb|EFZ43676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli EPECa14]
 gi|323162030|gb|EFZ47902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E128010]
 gi|323176148|gb|EFZ61740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323181966|gb|EFZ67377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1357]
 gi|323189886|gb|EFZ75164.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|323935358|gb|EGB31706.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1520]
 gi|323940153|gb|EGB36347.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E482]
 gi|323950696|gb|EGB46574.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H252]
 gi|323955522|gb|EGB51286.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H263]
 gi|323960276|gb|EGB55917.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H489]
 gi|323970511|gb|EGB65770.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TA007]
 gi|323975422|gb|EGB70523.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TW10509]
 gi|326345435|gb|EGD69178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1125]
 gi|330908580|gb|EGH37099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli AA86]
 gi|331040758|gb|EGI12916.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331046422|gb|EGI18512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331051855|gb|EGI23894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331056953|gb|EGI28947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331081477|gb|EGI52638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332103376|gb|EGJ06722.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 457

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|316985037|gb|EFV63990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           H44/76]
          Length = 465

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 129/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 114 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 173

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 174 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEG 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 234 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 285

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +  D+ TA +AL  F   +   +R          T
Sbjct: 286 GRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK---RRMEIKGTANGIT 342

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 343 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PV 392

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    ++  +  D     I  +   GD ++V  SN 
Sbjct: 393 SLKEADQVFCYAGGVDWDVAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVM-SNG 451

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 452 -GFGGIHGKLLEALR 465


>gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           ATCC 23445]
 gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC
           23445]
          Length = 467

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 102/292 (34%), Gaps = 33/292 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKATGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPCADRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +      +GT  +  DD++ + +  + H  GI+ +    K K+
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASGTAIIGIDDAYCQAIADRLHGAGIR-VVRISKEKH 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            D         ++ + +     G+     S+E +    G H AQN L  +          
Sbjct: 250 LD-----RGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSR 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +      G   R      +G    +++S   N  +   A+S   Q
Sbjct: 305 EEIH---AGLKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQ 353


>gi|329896223|ref|ZP_08271401.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
 gi|328921894|gb|EGG29261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
          Length = 452

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 126/390 (32%), Gaps = 74/390 (18%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTTT  +L   L          IG    + GV   L + P    F + E  
Sbjct: 107 VLAVSGTHGKTTTSSLLAWMLEEAGLQPGFLIGGVTANFGVSARLGQDP----FFVIEAD 162

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +   P   ++  +   H   F  +E+I      +   +   G +   
Sbjct: 163 EYDTAFFDKRSKFLHYHPRTLILNNLEFDHADIFDSLEDIQRQFHHLLRVVPSLGQVIYP 222

Query: 227 -----YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                 DD     L A+S         +FG   +A +Q  +W+         +       
Sbjct: 223 VGVAAIDDVLARGLWAQSE--------TFGADASAQWQ-YQWRNQGRGD-FRITQGNNEW 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E      G +   N L  +     +    + +I AL+ F   +   +R       G   +
Sbjct: 273 EGSTPLSGDYNLSNALAAIIAARHVGVSPEHSIAALATFKNTK---RRQELIAEVGGIQV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +  +P +++  +  L   + H   R + ++    E    +                
Sbjct: 330 IDD-FAHHPTAIRLTLEGLK--ASHHNSRLVLII----EPRSNTMRM------------- 369

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-------------------SETMDGLFLFIQSSLV 442
                 G H  AL DA   +   ++                    + +D L   +   L 
Sbjct: 370 ------GVHANALADATRPADQCYWLRAKNMGFDLTSDLVGGQVFDDVDQLVAKLVPELA 423

Query: 443 DGDVVVVKSSNS--CGF-YRLINLLLEEFP 469
             DVVV   SN    GF  +L+  L + + 
Sbjct: 424 PTDVVVCM-SNGDFQGFKDKLVQALKDTYE 452


>gi|320193650|gb|EFW68285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli WV_060327]
 gi|323965623|gb|EGB61077.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli M863]
 gi|327250177|gb|EGE61896.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 457

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFDVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|261881129|ref|ZP_06007556.1| UDP-N-acetylmuramate-alanine ligase [Prevotella bergensis DSM
           17361]
 gi|270332134|gb|EFA42920.1| UDP-N-acetylmuramate-alanine ligase [Prevotella bergensis DSM
           17361]
          Length = 459

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 138/412 (33%), Gaps = 41/412 (9%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I HA +     +VV T  V+      +  +  ++      +  V   L      + + 
Sbjct: 61  DDIPHACRNKETCLVVYTPAVSDNHKELL--YFRNNGFEVQKRAQVLGTLTRTHKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKT+T  M    +        A +G  + + G    L+      DF + E       
Sbjct: 119 GTHGKTSTSTMCAHIMHQSHVECNAFLGGISKNYGTNYILS---DSSDFVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H + P + VIT+  P HL  +   E    +     E +   G + ++ D     
Sbjct: 171 EFDRSFHWLSPWMTVITSTDPDHLDIYGTKEAYLESFRHYTELIRPGGALIIHTD----- 225

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            L+ K++       Y++ + K  DF          +   +     +++  +  G      
Sbjct: 226 -LEMKANVQDGVKTYTYSRDKG-DFHAENIVIEDGEITFDFVSPIENITGIKPGHPIPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  + +  +     +     +  +   +   +R+   +       + + Y  +P  
Sbjct: 284 IENGVAAMAMAQLNGCTANELKYGMETYRGVD---RRFDFKVRNDKHVFLTD-YAHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLS---------LYNIS 402
           +   +     +      R+I A+      +   ++ F+ D A  LS         +Y   
Sbjct: 340 I---LQSAKSLKELYGNRKITAIF--QPHLYTRTRDFYQDFANSLSHFDEVILTDIYPAR 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              + G     + D +   +        +    F+++   D DV+V+  +  
Sbjct: 395 EQPIPGITSKIIFDNIKPGVEKQMIR-KEDFPDFVKN--RDFDVLVILGAGD 443


>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 448

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S +    +AE
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-ALRAPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|21672877|ref|NP_660942.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium tepidum
           TLS]
 gi|30316059|sp|Q8KGD2|MURD_CHLTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21645929|gb|AAM71284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium tepidum
           TLS]
          Length = 465

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 124/352 (35%), Gaps = 30/352 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
            A II ITG+ GKTTT  +L    ++  +          +IG+P +         D  + 
Sbjct: 107 PARIIGITGTDGKTTTATLLHRICAAEGERKGFRAFSVGNIGIPFSSEVPGMTAADIAVL 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L          RP+IAV+T + P H+  +   IE  A+AK  I        T+ 
Sbjct: 167 ELSSYQL----EACFDFRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGDTLI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--- 281
            N+DD        +S     + +    +++  D     +    +   + V+  G +    
Sbjct: 223 YNHDDPILRAHFDRSEPWPFRLVRLGLRAETLDVAPGDFVSVEDG-EIVVRASGSTERLM 281

Query: 282 ---EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              E++  G  G H   N L ++          +T    L+ F   E    R   A N  
Sbjct: 282 RVDEIMKPGFRGEHNLYNALSSVAAALAAGVAPETMRGVLAGFGGVE---HRQELAGNAC 338

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S      S+ A    L  +        + + G     G    + +  +A+++ 
Sbjct: 339 GLNWINDSKA---TSVNALRQALQSVPAGM----VLIAG-----GRDKGNDYSAIADLVR 386

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ +   G     + DA      V  + ++       + +   G  V+ 
Sbjct: 387 E-KVACIVAIGESRRKIADAFRGVTPVVEAASLAEAVELARQNARPGASVLF 437


>gi|225011614|ref|ZP_03702052.1| UDP-N-acetylmuramate/alanine ligase [Flavobacteria bacterium
           MS024-2A]
 gi|225004117|gb|EEG42089.1| UDP-N-acetylmuramate/alanine ligase [Flavobacteria bacterium
           MS024-2A]
          Length = 445

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 106/302 (35%), Gaps = 38/302 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + ++A+ G+ GKTTT  +LT      +++++ I               +    +F I E
Sbjct: 110 NSKVLAVAGTHGKTTTSAILTHIFLETEQSFSSIMG---GFFNGNNSNLIGEGSEFMIVE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E       + P I  IT++ P HL  +   EE  +A  +    +E+   +   
Sbjct: 167 A-----DEYDRSFLQLYPSIGCITSMDPDHLDIYQTKEEFEAAFIQFSSQIEQNRIV--- 218

Query: 227 YDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                         A GI    +++G    AD+     +   +  + +++      + + 
Sbjct: 219 --------------AYGIPIHGFTYGVDVPADYNAFNVRNTKKGYFFDLKTPKGVYQDIL 264

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G H   N +  + +       +D  +K L  F     R   +          ++ +
Sbjct: 265 FNQLGKHNIANAICAIAMADQAGVPLDAVLKTLYTFPGVYRRMNVFEW-----GKAIVVD 319

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  ++  +  L    P+ +   I        +   +Q F  D   VL+      V
Sbjct: 320 DYAHHPTEIRKVLETLKGSFPNQKNCVIF----QPHLFSRTQDFMKDFLSVLA--AFDEV 373

Query: 405 WL 406
           +L
Sbjct: 374 FL 375


>gi|288801607|ref|ZP_06407049.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
 gi|288335649|gb|EFC74082.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 148/408 (36%), Gaps = 39/408 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A ++ A  +V+ T  + S  +    V+  ++      +  V   L      +   G+
Sbjct: 63  IPAACKEPASTLVIYTPAIPSNHAEL--VYFRENGFEIQKRAQVLGTLTRTHKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M    +        A +G  + + G    L+      DF + E       E 
Sbjct: 121 HGKTTTSSMCAHLMHQSHLDCNAFLGGISKNYGTNYILS---DHSDFVVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +     E ++K G + +       + L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALII------RKGL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
           + K +      IY + + +  DF     +  +     +     ++++ +  G       +
Sbjct: 227 EMKPNVQEGVRIYEYSRDEG-DFHAENIRIANGTITFDFFSPIENIKDIELGQPIPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +     +     +  +   +   +R+   +       + + Y  +P  + 
Sbjct: 286 NGISAMAMAQLNGCTAEELRNGMKTYGGVD---RRFDFKIKDNRHVFLSD-YAHHPKEIL 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVW 405
            +   L ++  + + +  A+      +   ++ F+ + AE LS         +Y      
Sbjct: 342 QSAKSLKEL--YADKKVTAIF--QPHLYTRTRDFYKEFAEALSHFDEVVLTEIYPAREEP 397

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + G     + D L  ++     +  D +  F++S   D DV+VV  + 
Sbjct: 398 IPGVTSELIYDNLSPNVKKQMIK-KDDVLDFVKS--RDFDVLVVLGAG 442


>gi|294787084|ref|ZP_06752338.1| UDP-N-acetylmuramate--alanine ligase [Parascardovia denticolens
           F0305]
 gi|315226736|ref|ZP_07868524.1| UDP-N-acetylmuramate--L-alanine ligase [Parascardovia denticolens
           DSM 10105]
 gi|294485917|gb|EFG33551.1| UDP-N-acetylmuramate--alanine ligase [Parascardovia denticolens
           F0305]
 gi|315120868|gb|EFT84000.1| UDP-N-acetylmuramate--L-alanine ligase [Parascardovia denticolens
           DSM 10105]
          Length = 528

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 146/466 (31%), Gaps = 72/466 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAI 113
           ++    Q  A    V         +   P        GAL  ++  + A L + +  + +
Sbjct: 80  YLGQKAQNVAQADTVVWSSAIKPDN---PEIVAAHAQGALLMHRSDLLALLMAHSRAVTV 136

Query: 114 TGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            G+ GKTTT  M    L  +   +      +    I      A         +    ++ 
Sbjct: 137 AGAHGKTTTSAMAAQILVSAGSGQLADPSFAIGGSIRTSEGTADGGHAGKGAVL---VAE 193

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS- 230
             E        RP IA+IT + P HL ++   +    A   +      +G + L  DD  
Sbjct: 194 ADESDGSFEKYRPFIAIITNVEPDHLDHYGSAQAFHQAF--LEHAGHASGHVVLCGDDPG 251

Query: 231 FFELLKAKSHALGIKTIYS-------FGKSKNADFQLRKWKQCSEQSWME---------V 274
             +LLKA S       +          G S  +   +   K+ +    ++         V
Sbjct: 252 ALDLLKALSPEQAATAVVYSTQPDLPLGGSPASFVYIGGEKEAASDQEVDPQVAESFSLV 311

Query: 275 QLQG---------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              G                   V     G H A+N    +    +L      A +A   
Sbjct: 312 LPPGLMAQSLSAEVRDSSSGKFRVNLRVPGIHNARNAAAAIIAAVLLGVSPQKACQAAFD 371

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G  +R+         T++D+ Y  +P  + A +    +  P    R +       
Sbjct: 372 F---YGAKRRFEKRGEVNGVTVVDD-YAHHPTEISALLQAAHRRYPQAATRVVF----QP 423

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG----------------FHVLALKDALPRSIH 423
            +   +  F  + A+ LSL     V ++G                  V++L D     + 
Sbjct: 424 HLYSRTHFFAREFAQALSL--ADDVIVTGIFPAREKQEDWPQVGPDIVVSLIDQEGGRVK 481

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
               E MD     I +    GD+++   + S       +++ L ++
Sbjct: 482 ARSVEDMDEAGRLIAADAQPGDLILTVGAGSITQVADTILDALKDQ 527


>gi|262275080|ref|ZP_06052891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
 gi|262221643|gb|EEY72957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
          Length = 451

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 134/395 (33%), Gaps = 32/395 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     +++        +   L     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVVGNAMSRGNPCVEYVLDNNLNYTSGPQWLLDFLLKDRWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    + GV   L     +  F + E            +  V   P 
Sbjct: 124 VLEDCGYQPGFLIGGVPGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I    +D       A        
Sbjct: 180 TLIMNNLEFDHADIFDDLNAIKRQFHHLVRTVPGIGRIIAPSNDDNITSTLAMG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +    D   +  K+ ++ S  +V   GK +  V    IG H   N LMT+    
Sbjct: 234 -CWSELEFAGEDGIWKAEKRVADGSEFDVWFDGKPVGTVKWDLIGDHNVSNALMTVAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A  AL  F   +   +R     +    T+ D+ +  +P ++K   + L+ + 
Sbjct: 293 HVGVTPDLACDALGRFINTK---RRLEHKGDFNGVTVYDD-FAHHPTAIK---TTLAGLR 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                RRI  +    E    +     H D +A  L   ++  ++    H+    + +  +
Sbjct: 346 AKVGDRRILAV---LEPRSNTMKLGVHKDEIAPSLDDADVVLLFQP-EHITWSVNDVAEA 401

Query: 422 IH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                   + +D L   I S    GDVV+V  SN 
Sbjct: 402 CKAPAKTFDDIDALVAGIVSEANSGDVVLVM-SNG 435


>gi|257459226|ref|ZP_05624345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
 gi|257443611|gb|EEV18735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
          Length = 436

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 121/362 (33%), Gaps = 60/362 (16%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-------------VPL 151
            S+  I+ ITG+ GKTTT   +   L  +  +    G+    I              V  
Sbjct: 56  DSRIKIVGITGTNGKTTTAAAIYSTLLDLGFSCGLSGTRGAFINERRIDEKGLTTSSVFK 115

Query: 152 TLARMPV----DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           T++ +        ++ + E+    + + R     +   + + T ++  HL     ++E A
Sbjct: 116 TMSYLYEAGKQGCEYFVMEVSSHAIAQNRI--EGLEFALKIFTNLSQDHLDYHGSMQEYA 173

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           + K+  F          +N DD   +   A +         ++G    A F +  +    
Sbjct: 174 AVKSSFFA---DDAPKLINADDGHIKFDPANA--------LTYGIKNAASFGVSGYGLKG 222

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGR 326
               +     G + ++    IG     N+      V ILT    +   KAL+ F   EGR
Sbjct: 223 GIDALVRTPNGDNAQLQSDLIGEFNLYNLTAAFAAVKILTKLPNEKIAKALANFGGVEGR 282

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     +N+    ++D  +   P  ++  ++ L        G  IAV G     G+   
Sbjct: 283 VQ----IVNKDPLVIVD--FAHTPDGIEKVLNALRA-----SGEIIAVFGA---GGDRDH 328

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                +  +              H   +      +     SE  D +   I + +   D 
Sbjct: 329 GKRPKMGAIA------------EHFAKICIVTSDNPR---SENPDEIIEQICAGMRRKDK 373

Query: 447 VV 448
           ++
Sbjct: 374 IL 375


>gi|315652170|ref|ZP_07905167.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
 gi|315485565|gb|EFU75950.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
          Length = 448

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               S+  +IA+TG+ GKTTT  ++   +S+ K++   +G+          +A    +  
Sbjct: 99  GYKYSRGDLIAVTGTNGKTTTTALVGEIMSNFKESSFTVGNIGIPYTD---IADKTNENT 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RP I+ I  I P HL+    +E     K +I +  ++  
Sbjct: 156 VTVLETSSFQL----ETVIDFRPKISAILNITPDHLNRHHTMENYIRVKEDISKNQDEND 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRK--WKQCSEQSWMEVQLQ 277
              LNY+D+       +  A     +  F   +  D  F L         + +  ++   
Sbjct: 212 FCILNYEDAALREFAKRVKA----KVVFFSSKERLDNGFYLEGGFIMHSVDGNSTKLLDT 267

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           GK      + +G H  +N++    I  +     D  +     FH  E    R        
Sbjct: 268 GK-----LNILGRHNYENVMAATAIAFVYGVPQDIIVNTCYNFHAVE---HRIEFVKEVN 319

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP    AAI  +  +          ++G   + G     +         
Sbjct: 320 GVKYYNDSKGTNPD---AAIQAVLAMPAATY-----IIGGGYDKGSEYDEWIESFG---- 367

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + L G     + D   +     +   E+M+            G+ V++
Sbjct: 368 -TKVKKLVLMGATAKKIADCAKKHGFTDIEIVESMEEAVKLCAGEAKAGEYVLL 420


>gi|218707842|ref|YP_002415361.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|293402858|ref|ZP_06646955.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298378386|ref|ZP_06988270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
 gi|218434939|emb|CAR15878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291429773|gb|EFF02787.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298280720|gb|EFI22221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
          Length = 457

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLPKKAEAAQ 457


>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017285|sp|A6TS63|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
          Length = 455

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 118/354 (33%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+  I+AITG+ GKTTT  +         K    +G+        +  A    + D
Sbjct: 104 AFRLSRGKIVAITGTNGKTTTTALTGEIFKGAGKNTYVVGNIGVPF---IEKALDTTEED 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I+       P +  +  + P HL+    IE    AK  +F       
Sbjct: 161 VIVIEVSSFQLESIKEF----HPKVGTLLNLTPDHLNRHKTIENYREAKLNLFMNQSLQD 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNYDD            L  + IY F +      Q+ +     +   + +Q + K  
Sbjct: 217 YAVLNYDDITSR---EAGKTLAAQKIY-FSRK-----QILEEGVFVDNQLITIQTKEKRY 267

Query: 282 EVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +V+H      +G H  +N L    +  IL    +   K L  F    G   R        
Sbjct: 268 DVIHIDEIKILGQHNLENALAATAMTFILGVSAEDIAKGLRNF---PGVAHRLEFVEEIE 324

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S   N  +   AI              I + G   + G+ +     D  +   
Sbjct: 325 GVKYINDSKGTNTDASIKAIEAAQA-------PIILLAGGQDKGGDFT-----DFVKAFD 372

Query: 398 LYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
              + H+ + G     + +    +    V     ++   +  +     GD +++
Sbjct: 373 G-KVKHLLVYGETSDNIYETALHNNFKVVSQVRDLEEAVIRAKGIAQAGDTILL 425


>gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis KIM 10]
 gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Antiqua]
 gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Nepal516]
 gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Pestoides F]
 gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Angola]
 gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           FV-1]
 gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis CO92]
 gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM
           10]
 gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Antiqua]
 gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CO92]
 gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Pestoides F]
 gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Angola]
 gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D106004]
 gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D182038]
 gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 438

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 136/376 (36%), Gaps = 54/376 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +   +    G+          L  +  D    
Sbjct: 101 RENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSVGGGGNIGVP-----ALTLLKQDNQLT 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F    G   R++  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFS---GLPHRFQLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S   H    + +    
Sbjct: 315 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFSGLTHFLQGDRI---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              V+  G     L    P    +  +ETM      +   ++ GD V++    +S     
Sbjct: 366 --KVYCFGRDGGQLAALRPDVSQL--TETMAQAMALVAKVVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 449

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 131/378 (34%), Gaps = 51/378 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A II ITG+ GKTT   ++    +  ++     G+      V   +A+     ++ + 
Sbjct: 109 SEAPIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIG---FVASKVAQEVKTDEYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT +  AHL     +E   +AK  IFE   ++  +  
Sbjct: 166 ELSSFQLLGIEH----YRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDYLIF 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N D     +  +K  A     I  F      D   + K         + + L        
Sbjct: 222 N-DKQRHLIDTSKIRA----KILYFSTQHRVDGIYVEKEYIVYNGVRL-IHLDD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   +++LS F    G   R +   N       ++
Sbjct: 270 IVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFS---GIAHRLQYIGNNKTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A+S   Q      G            G    +   +L   ++  N+  +
Sbjct: 327 SKATNTLATQFALSSFKQPVIWLCG------------GLDRGNGFDELIPYMN--NVRVM 372

Query: 405 WLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------ 457
              G      +K    +  +V  ++ +      +Q  +   DVV++  S +C        
Sbjct: 373 VTFGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQDVIEPNDVVLL--SPACASWDQYDT 430

Query: 458 -----YRLINLLLEEFPA 470
                 R I       P+
Sbjct: 431 FEQRGERFIEAFRAHLPS 448


>gi|15677021|ref|NP_274173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|15677057|ref|NP_274209.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|7226382|gb|AAF41532.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|7226420|gb|AAF41567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|325140356|gb|EGC62878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis CU385]
 gi|325200178|gb|ADY95633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           H44/76]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 129/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +  D+ TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    ++  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWDVAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 445 -GFGGIHGKLLEALR 458


>gi|317493603|ref|ZP_07952024.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918546|gb|EFV39884.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 127/369 (34%), Gaps = 32/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +     ++    +  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEECGYE---PGFVIGGVPGNFDVSARMGNSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I    
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIISPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
            D+  + + A          +S  +    D      K   + S+ EV L G  + EV   
Sbjct: 222 SDANLKQVMAMG-------CWSEQELSGEDGTWNARKLNPDASYFEVLLDGDVVGEVNWG 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R      + F   + + +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADACRALDSF----INARRRLELRGEAFGVKVYDDF 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVW 405
             +P ++ A +S L      G  R +AVL    E    +    +   ++         V+
Sbjct: 331 AHHPTAILATLSALRS-KVGGTARILAVL----EPRSNTMKMGVSKNDLAPALGRADEVF 385

Query: 406 LSGFH-VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L   H +  L   +  +     H+S  +D L   I  +   GD ++V  SN  GF     
Sbjct: 386 LFQPHHIPWLVTEVAEACVQPAHWSADIDVLVDMIAKTAQPGDYILVM-SNG-GFEGIHS 443

Query: 459 RLINLLLEE 467
           +L+  L  +
Sbjct: 444 KLLKALEHK 452


>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
 gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
          Length = 438

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 136/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---ALSLLQSPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH ++   A +  +   H+  +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTHSLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYENAQ---I 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++        K   SFG     DF    +    +Q  + ++++G+ + 
Sbjct: 209 CIVNADDALTMPVRG-----ADKRCVSFGV----DFG--DYHLNKQQGSIWLRVKGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++ AL+ F    G   R++         
Sbjct: 258 NTAEMKMAGQHNYTNALAALALADAVGLPRASSLAALTQF---NGLAHRFQLVHEHQGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    ++G   +  + +      L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVQGTLWLLMGGDGKSADFTP-----LIPWLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G    AL  AL   I V  +ETM      I   +  GD+V++
Sbjct: 365 V-RLYCFGRDGDALA-ALRPDIAVR-TETMRQAMEQIAPQVKAGDMVLL 410


>gi|283769653|ref|ZP_06342549.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
 gi|283103921|gb|EFC05307.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
          Length = 430

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 128/382 (33%), Gaps = 46/382 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V   D    + +  I V   +  L  ++  +       +  +I ITG+ GK+TT  ++  
Sbjct: 65  VCLHDFDYILKAPGI-VLKAEQELETISSQSELFIKMYRNQVIGITGTKGKSTTSSLVYS 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L   KK    +G+        +       +    +FEL    +   R     V P+IAV
Sbjct: 124 LLKQEKKVV-LVGNIGKPCFEEI---EAMEEGALAVFELSCHQMEYTR-----VSPYIAV 174

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   HL ++   E+   AK+ I+   +      +  +                    
Sbjct: 175 LLNLYEEHLDHYGSFEKYGLAKSHIYSYQQDNDLAIVPMNLP------------------ 216

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           SF       + L K     +  +      G+ +      IGYH  QNM + + I   L  
Sbjct: 217 SFLPKPETAWYLEKEVFVKDGYFF--NPLGQLIIPKTKLIGYHNEQNMAIAVAIAMKLGI 274

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                 K L  F P E    R            +++S +    S   A+  L  +     
Sbjct: 275 SEKGIQKGLETFEPLE---HRLEYVGIYQGIHYVNDSISTIGQSCIQAMESLPLVQ---- 327

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHVHYS 427
                ++G M          + +L + +  + N  ++++       L +   R  + ++ 
Sbjct: 328 ---TVLIGGM-----DRGIGYQELEDYIQKHPNHHYIFMYATGRRILSELGKREKNFYFV 379

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           ET+       +     G +V++
Sbjct: 380 ETLKEAVCLAKRITERGKMVLL 401


>gi|254419673|ref|ZP_05033397.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
 gi|196185850|gb|EDX80826.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
          Length = 468

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 110/366 (30%), Gaps = 45/366 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T + + G+ GK+T   M+   LS   +    +          +       D  F    +
Sbjct: 110 PTSVGVAGTSGKSTITGMIAWILSQTDRNPTVV-------NGAVMKNFADADHPFASALV 162

Query: 168 G-----MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G     ++ + E         P +AV++ I+  H      +EE+               T
Sbjct: 163 GGPDLFVAEVDESDGSIAGYDPTVAVVSNISLDH----KSMEELRDLFGGFTARAT---T 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM 281
             LN D+     L      L      +F   +  AD      +         +       
Sbjct: 216 AVLNLDNPETAAL---VQTLPAGKAITFALGEEKADLSAYDLQPTPTGMKFRLMEGWSEY 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +VV +  G H   N L  LG V  L      A+KAL  F    G  +R          T+
Sbjct: 273 DVVLNVPGAHNVANALAALGAVKALDVPTGQAVKALETF---AGIRRRMEVVGTVNDITV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL---SQSFHIDLAEVLSL 398
           ID+ +  NP  + A +  L          R+ +L      G L      F    A ++  
Sbjct: 330 IDD-FAHNPDKIAATLKTLHAFDG-----RLLILFQPHGFGPLKLMKSEFIDGFAGLMRE 383

Query: 399 YNI----SHVWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVV 448
            ++      V+  G          +   +  +        T       I      GD ++
Sbjct: 384 TDVLLMPEPVYYGGTTDRSVGSEDIATGVRAAGRQAEALPTRADCGDRIVQMAQSGDRII 443

Query: 449 VKSSNS 454
           V  +  
Sbjct: 444 VMGARD 449


>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3549]
          Length = 417

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 123/357 (34%), Gaps = 60/357 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWM 272
                                  H  GIK    +   + A ++    L    +       
Sbjct: 197 --SNDFFVY------------DVHNNGIKYAGEYQIIRGAIYRNSTKLLDIAET------ 236

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+++ L I+  L  D++ AI ++  F   +G   R + 
Sbjct: 237 -------------KLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKI 280

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T I++S   N  +  AA++ ++          I +LG + + G+ S      +
Sbjct: 281 VKKVNGTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----M 330

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L  Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 331 IKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLL 386


>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|158512419|sp|A0Q5C2|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida U112]
 gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida Fx1]
          Length = 417

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 123/357 (34%), Gaps = 60/357 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWM 272
                                  H  GIK    +   + A ++    L    +       
Sbjct: 197 --SNDFFVY------------DVHNNGIKYAGEYQIIRGAIYRNSTKLLDIAET------ 236

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+++ L I+  L  D++ AI ++  F   +G   R + 
Sbjct: 237 -------------KLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKI 280

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T I++S   N  +  AA++ ++          I +LG + + G+ S      +
Sbjct: 281 VKKVNGTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----M 330

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L  Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 331 IKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLL 386


>gi|296101007|ref|YP_003611153.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055466|gb|ADF60204.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 457

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 143/421 (33%), Gaps = 44/421 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPFMSGPQWLHDFVLRDRWVVAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFDVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I L  +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPENDINLKQTMAMGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +K     + S  EV L G+ + EV    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAKKLNV--DASEWEVWLDGEKVGEVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVQPADAANALGSFINAR---RRLELRGEAHGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R +AVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAI 471
           DA  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A 
Sbjct: 401 DACIQ--PAHWSADVDALADMVVKAAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAA 456

Query: 472 Q 472
           +
Sbjct: 457 E 457


>gi|325856498|ref|ZP_08172187.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
 gi|325483467|gb|EGC86440.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 153/426 (35%), Gaps = 45/426 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    +K A  +VV T  + +  +    V+  ++      +  V   L      +   G+
Sbjct: 63  IPEECRKPASTLVVFTPAIPASHAEL--VYFHENGFEIQKRAQVLGTLTRTHKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M    +        A +G  + + G    L+      DF + E       E 
Sbjct: 121 HGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILS---DRSDFVVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +     E ++K G + L       + L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALIL------HKGL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
           + K H      +Y + ++ + DF     +        +     ++++ V  G       +
Sbjct: 227 EMKQHVQEGVKVYEYSRN-DGDFHAENVRIADGTITFDFISPIENVKDVELGQPIPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +     +   + +  +   +   +R+   +       + + Y  +P  + 
Sbjct: 286 NGIAAMAMAQLNGCTANELRRGMKTYGGVD---RRFDFKIKNSRHVFLSD-YAHHPKEIL 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVW 405
            +   L ++ P    R++ V+     +   ++ F+ D A  LS         +Y      
Sbjct: 342 QSAKSLKELYPD---RKVTVIFQ-PHLYSRTRDFYKDFAGALSHFDEVILTEIYPAREEP 397

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLI 461
           + G     + D L   +     +  D +  F++S   D DV+VV  +          ++ 
Sbjct: 398 IPGVTSSLIYDNLRPGVEKQMIK-KDDVLDFVRS--RDFDVLVVLGAG--NLDNYVPQIT 452

Query: 462 NLLLEE 467
            LL E+
Sbjct: 453 ELLNEK 458


>gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis EAS054]
          Length = 379

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 53/367 (14%)

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDF 162
            +TT  ++   L +  +    IG+  N +                +   LA M    VD 
Sbjct: 1   NSTTTYLVEGGLRAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDT 60

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKT 220
            + E+    L   R      R  +   T ++  HL     + +   AKA +F  +   + 
Sbjct: 61  VVMEVSSHALALGR--VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRA 118

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQG 278
            T  +  DD           A     I      + A ++             +  +   G
Sbjct: 119 RTAVVCIDDDAG----RAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAG 174

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +     G +   N L+ L I+  +    + A+            G+  +    QGF
Sbjct: 175 VGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGF 231

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+D  Y   P ++++ ++ L+        RR+AV+      G+        +  + + 
Sbjct: 232 LALVD--YAHKPEALRSVLTTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQ 282

Query: 399 YNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDV 446
                V ++  +             L  A          E  D         +    GDV
Sbjct: 283 L-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDV 341

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 342 VLIAGKG 348


>gi|332095379|gb|EGJ00402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           5216-82]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 153/426 (35%), Gaps = 48/426 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  + +D+R   P           + G   +       A L+V +  +  +  SLS    
Sbjct: 30  VTPLVMDTRMTPPGLDKLPEAVERHTGS--LNDEWLMAADLIVASPGIALAHPSLS---- 83

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D    +          ++A I+AITGS GK+T   ++     +     A        
Sbjct: 84  AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA-----AGGNVGVGG 138

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
                 L  +  + +  + EL    L      T  ++   A I  +   H+  +  G+++
Sbjct: 139 NIGLPALMLLDDECELYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQ 194

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             +AK  I+E         +N DD+    ++        +   SFG +         +  
Sbjct: 195 YRAAKLRIYEN---AKVCVVNADDALTMPIRG-----ADERCVSFGINMG------DYHL 240

Query: 266 CSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             +Q    ++++G+ +  V      G H   N L  L +         +++KAL+ F   
Sbjct: 241 NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT-- 298

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R+   L       I++S   N  S +AA++ L     H +G    +LG   +  +
Sbjct: 299 -GLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSAD 352

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S      LA  L+  N+  ++  G     L    P       +ETM+     +   +  
Sbjct: 353 FSP-----LARYLNGDNV-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQP 404

Query: 444 GDVVVV 449
           GD+V++
Sbjct: 405 GDMVLL 410


>gi|262045339|ref|ZP_06018363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037257|gb|EEW38504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 457

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + EV   
Sbjct: 222 NDINLKQVMAMGCWSEQEQV-----GEQGHWQAK--KLNADASQWEVLLDGEKVGEVKWA 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINAR---RRLELRGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +  L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLQALRG-KVGGTARILAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 382

Query: 403 HVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF
Sbjct: 383 EVFLLQPQHIPWQVAEVAEACVQ--PAHWSADVDTLAEMVVKTAHPGDHILVM-SNG-GF 438

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++  A +
Sbjct: 439 GGIHQKLLDKLAQKAAAAE 457


>gi|157147488|ref|YP_001454807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           koseri ATCC BAA-895]
 gi|157084693|gb|ABV14371.1| hypothetical protein CKO_03287 [Citrobacter koseri ATCC BAA-895]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+      + L  AR     +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAAR-----ELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRGADA-----RCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLTRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   L  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--IAEQTETMEEAMRLLAPRLQPGDMVLL 410


>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 444

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 121/352 (34%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----AMEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   +++   AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD        K         ++  K   A   +   +    +    +    +
Sbjct: 207 EDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKEDGAIAYVEDGEVEINEP---IAFNME 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+  H  G H   N L      ++     +   KALS F   E    R          
Sbjct: 264 QEELALH--GTHNLYNSLAAGISANLAGIKKEDIRKALSDFKGVE---HRLEKVATVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ E++   
Sbjct: 319 QFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVRTK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + ++L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALIYL-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAFQLAKKGETVLL 417


>gi|308048304|ref|YP_003911870.1| UDP-N-acetylmuramate [Ferrimonas balearica DSM 9799]
 gi|307630494|gb|ADN74796.1| UDP-N-acetylmuramate [Ferrimonas balearica DSM 9799]
          Length = 455

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 128/367 (34%), Gaps = 27/367 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTTT  ML   L   +      IG      GV   L     D  F + E  
Sbjct: 105 VLAVSGTHGKTTTASMLAWLLEDNQLAPGFLIGGVPQEFGVSARLG----DTPFFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP   +I  +   H   F  + +I      +   +  +G I   
Sbjct: 161 EYDSAFFDKRSKFVHYRPRTLLINNLEFDHADIFDSLADIQRQFHHLVRTVPGSGQIIWP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             D+    + AK        +   G            K   + S  EV L G+ + EV  
Sbjct: 221 AADTAVAEVLAKGCWSEQALLGPGGWEAR--------KLAQDGSRFEVLLGGEVLGEVQW 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G H  QN L  L     +       I +L+ F    G  +R          TL D+ 
Sbjct: 273 NLMGDHNIQNALGALAAARHVGVRPADGIASLARF---AGPKRRMERRGEAAGVTLYDD- 328

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHV 404
           +  +P ++   ++ L       E R +AVL        + Q  H   LA  L   + + V
Sbjct: 329 FAHHPTAITTTLAGLRA-RLGSESRILAVLE--PRSNTMKQGVHQATLAASLGQSDQAFV 385

Query: 405 WL-SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   G             + V   +++  L   I +    GD V+V  SN  GF  + N 
Sbjct: 386 FAPPGLGWDLTAAMAAAPVPVTVRDSVQDLIDAIVAEAQTGDTVLVM-SNG-GFEGIHNR 443

Query: 464 LLEEFPA 470
           LLE    
Sbjct: 444 LLEALEP 450


>gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC]
 gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC]
          Length = 833

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 72  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKKNPEFLSAKSRGNRVVHRAELLAELA 131

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 132 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 185

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 186 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 239

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 240 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 291 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 347 EDYAHHPSEISC---TLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVL- 402

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 403 ---LTEVYSAGEEAEDISYQKLAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 454


>gi|229820895|ref|YP_002882421.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
 gi|229566808|gb|ACQ80659.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
          Length = 473

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 145/436 (33%), Gaps = 51/436 (11%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           G   + GH     A  +GA +VVV++ +      L   V   +  +  L++ A  AR+ +
Sbjct: 46  GARVEVGHR---AAAVEGADVVVVSSAIRGDNPEL---VRARELGVEVLHRSAALARIAN 99

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +  ++A+ G+ GKTTT  ML +AL+       A IG+                 V  G  
Sbjct: 100 ERELVAVAGTHGKTTTSAMLAVALTEAGLDPTAAIGAVVRDWSSG-------ARVGAGRV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +  +   +  FL +   P +AV+T I   HL +++  + +  A  E    +   G +  
Sbjct: 153 FVAEADESDSSFLAYA--PRVAVVTNIEADHLDHYADTDALVEAFREFARRIVSGGLLVA 210

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-----KSKNAD-FQLRKWKQCSEQSWMEVQ---- 275
             DD     L   + A GI+ + ++G         +D  ++   +  +  +  EV     
Sbjct: 211 CADDPGSLELARWATAQGIR-VRTYGVGGEPLDPASDHVRITDLELDATSARAEVTLVTA 269

Query: 276 --LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             L    + +     G H   + +        L AD +     L+ F    G  +R+   
Sbjct: 270 DGLGPGPVRLRLAAPGRHTVLDAVAGWAAGLELGADAEQLAHGLARFT---GTARRFETR 326

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   ++D+ Y  NP       + L          R+ VL         +        
Sbjct: 327 GEAGGVRVVDD-YAHNPT---KVRAALEAARLAVGDGRVLVLFQPHLYSRTAAFATAFAD 382

Query: 394 EVLS--------LYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQS 439
            + +        +Y        G     +  A P                       I  
Sbjct: 383 ALDAADVVVVTGIYGAREDPAPGVTSALVTQAEPPGRAARGAAPFALVPDRLAAAHEIAG 442

Query: 440 SLVDGDVVVVKSSNSC 455
               GD+V+   +   
Sbjct: 443 RARPGDLVLTVGAGDV 458


>gi|149183844|ref|ZP_01862239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
 gi|148848443|gb|EDL62698.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
          Length = 449

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 109/327 (33%), Gaps = 35/327 (10%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L    K     G+      V   +A+   + +  + EL    L  I       RP
Sbjct: 129 LVHEMLDKGGKQPLIAGNIGT---VASEVAQTAKEENNIVIELSSFQLMGIEEF----RP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++ T +  AHL     IE+ A AKA I     K   + +N D      L + S A  I
Sbjct: 182 KISIFTNLYEAHLDYHGSIEDYAKAKANITANQTKDDYLVINADQPELAELLSFSKAQKI 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                    K A  +        ++              +    G H  +N+L  +    
Sbjct: 242 YFSTRRPLEKGASIKDGAIYYDDDKIM---------ETSLIALPGKHNLENILCAVIAAK 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +   + L  F   + R +  R    + F+   ++S   N  + K+A+    Q  
Sbjct: 293 LSGVSNEAIQEVLKTFTGVKHRTQFVRTLNGRSFY---NDSKATNVLAAKSALEAFDQ-- 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIH 423
                  I + G +    +   SF  +L   L   N+  +   G      L+ A    I 
Sbjct: 348 -----PTILLAGGL----DRGNSF-DELIPYLK--NVKALITFGETAVKFLETAAKAGIQ 395

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVV 449
            V   + ++           +GDV+++
Sbjct: 396 TVKRVDNVEAAVPAAYEISEEGDVILL 422


>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium atrosepticum SCRI1043]
 gi|60390382|sp|Q6D0I1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 127/347 (36%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +       
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-----ALQLLEHPAQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTTSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLHIYEH---ADL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V  +     
Sbjct: 209 CVVNADDALTMPVRGADA-----RCRSFGVDVG-DYHLNRQQ---GETWLRVDGERVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ A  +     I
Sbjct: 260 REIKLVGQHNYTNALAALALADAVKIPRASALTALTSFT---GLPHRFQMAFERNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L+      +G    +LG   +  + S      L   L    I 
Sbjct: 317 NDSKATNVGSTEAALSGLA-----VDGTLHLLLGGDGKSADFSP-----LVPYLQGERI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 366 RLYCFGRDGQQLAALRPE--IAEQTETMEQAMRVIAERIRPGDMVLL 410


>gi|303256684|ref|ZP_07342698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
 gi|302860175|gb|EFL83252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
          Length = 452

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 123/377 (32%), Gaps = 43/377 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            ++A+ G+ GKTTT  ML   L          IG    + G    L     + ++ + E 
Sbjct: 104 HVLAVAGTHGKTTTTSMLAWILEDCGLNPSFLIGGVPQNFGHSARLT----ESEYFVIEA 159

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V   P   ++  +   H   F  +E I      +   +   G +  
Sbjct: 160 DEYDTAFFDKRSKFVHYSPRTVILNNLEYDHADIFPNLEAIERQFHHLVRTIPSHGKVIF 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
           N      E L             SFG S   D++L + +         +   GK +    
Sbjct: 220 N---EASEALHRVLKMGLWTPAESFGTSPVCDWRLVEHEGA------RLFAGGKEVGRFE 270

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    +          + A+ ALS F   +   +R           +ID+
Sbjct: 271 LSLPGEHNLLNASAAVAAAVNAGVSAERAVDALSRFEGVK---RRMEVKGEVAGTKVIDD 327

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I  +     +  GR +AVL      M  +G +       L +      
Sbjct: 328 -FAHHPTAIEETIKAVRS--KYQTGRLLAVLEPRSNTMK-LGTMKAQLPGSLVQ------ 377

Query: 401 ISHVWLS-GFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
              V+   G  V         P        + ++ L   + S    GD ++V  SN  GF
Sbjct: 378 ADKVFCYQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILVM-SNG-GF 435

Query: 458 Y----RLINLLLEEFPA 470
                +L++ L  +F A
Sbjct: 436 GGVHKKLLDGLKSKFGA 452


>gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 857

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 168/500 (33%), Gaps = 76/500 (15%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN--GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+ +  +G  + +     ++  GI+ID +  I P     A++     G D       
Sbjct: 344 TLDDVPR--KGRKVFLRESANLSTGGIAIDRTDEIHPHNIEIAVRAAKAIGLD------- 394

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGV-----------------DDVLGALNKLAVAARLR 105
             AG+ +   D+   + + +  +  +                  +V  A+  +      +
Sbjct: 395 -IAGIDITMEDIRKPLSATNGAIIEINASPGIRMHHYPSKGKPRNVAKAIVDMLFPKGSK 453

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLAR 155
           +   I++ITG+ GKTT   M+   L +   T     +   +I            P +   
Sbjct: 454 ATIPIVSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSART 513

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
              D +     L  +  G +R         + VIT I+  HL     + +E++A  KA +
Sbjct: 514 CLADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKALV 573

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHAL--------GIKTIYSFGKSKNADFQLRKWKQ 265
            E ++  G   LN DD     L  K+              T+    ++      +++   
Sbjct: 574 VEAVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEGVI 633

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +   ++ + +     G   H  +N L  +     +   ++   K +  F+P   
Sbjct: 634 VIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPDTT 693

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                    N G F ++ + Y  N   +K  I    ++  +   R I V+G   +  + S
Sbjct: 694 HNPGRFNLFNIGSFRVLVD-YGHNVEGIKKVIEAARKLDAN---RLIGVIGVPGDRMDSS 749

Query: 386 QSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDAL------PRSIHVHYSET 429
                 + EV        +++           G     L++         ++I +   ET
Sbjct: 750 I---FKVGEVCGK-GFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKET 805

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
                     S   GD++VV
Sbjct: 806 --EALKAAMHSAEAGDLIVV 823


>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189082909|sp|B0TZ72|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 414

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 134/374 (35%), Gaps = 64/374 (17%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA +IA+TGS GK+T   ML   L  +      +G+          L ++    D+ 
Sbjct: 93  RNTKAKMIAVTGSNGKSTIVTMLDFVLRDMGYKSILVGNIGTPP-----LNKIGEKFDYC 147

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    +     L + V   +  +  ++  HL  +   EE   +K             
Sbjct: 148 VVEVSSFQID----LFNSVEFDLGCVVNVSLDHLDRYKNYEEYKQSKLN----------- 192

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                      L   S    +  +++ G     ++Q+ +     + + +    +      
Sbjct: 193 -----------LAKFSKDFFVYDVHNTGIKYAGEYQIVRGSIYKDTTKLLDITE------ 235

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H  +N+++ L I      D+  A+ A+  F   +G   R     N    T I+
Sbjct: 236 -TNLFGEHNLENIIVVLNIFDRFGIDISKAVAAIKKF---KGLKHRCEIVKNIAGVTYIN 291

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AA++ ++          I +LG + + G+ S      +++ L+ Y + +
Sbjct: 292 DSKGTNVGATIAALNSITS-----SKNIILLLGGVAKGGDFSL-----MSKSLAKY-VKY 340

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           V+L G     +++ +           M   F        D ++V++    +S        
Sbjct: 341 VYLYGQDKEYIENYIKDMCRYQICNDMKDAFRLASQKAQDSEIVLLSPACASFDEFSGYA 400

Query: 453 -NSCGFYRLINLLL 465
                F +L+  L 
Sbjct: 401 ERGEVFEKLVAELK 414


>gi|121606308|ref|YP_983637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595277|gb|ABM38716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 503

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 129/383 (33%), Gaps = 50/383 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  L     L     ++ ITG+ GKTT   +    +    K+ A  G+    +   LT
Sbjct: 108 QALADLKE--DLAYAPKVVGITGTNGKTTVTSLTGQLIERAGKSVAVAGNIGPTLLDTLT 165

Query: 153 -----LARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                 AR P     +F + EL    L           P +A +  I   HL     +  
Sbjct: 166 GKLDEHARDPSAALPEFWVLELSSFQLDG----VTNFEPDVATVLNITQDHLDWHETLPA 221

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSK---NADFQLR 261
            A+AK+ ++    ++G + LN +D      + A       ++  +FG  +     D+ + 
Sbjct: 222 YAAAKSHVY---GRSGLMLLNRNDPLVMTAVPALVKGKPGRSYLTFGGDEPKRPGDYGIE 278

Query: 262 KWKQCS---------------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                +               +   + + +Q           G H A N L  LG+   +
Sbjct: 279 TVNGMAWLVRAAEADETIKRRKAEELVLHIQRLMPLEALRIQGRHNATNALAALGLAVAV 338

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   +          G   R             D+S   N  +  AA++ L      
Sbjct: 339 GCPLAPMLHG---LREYRGEPHRVESVAVLEGIEYFDDSKGTNVGATVAALAGLGS---- 391

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVH 425
            E + + +LG   +  + S      LA+ ++ Y +  V L G     ++ AL  S + + 
Sbjct: 392 -ERKLVLILGGEGKGQDFSP-----LADPVARY-VRVVVLIGRDAPLIRAALQGSRVELL 444

Query: 426 YSETMDGLFLFIQSSLVDGDVVV 448
            + +M             GD V+
Sbjct: 445 DAASMQEAVSLAAGQARPGDAVL 467


>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
 gi|158513048|sp|A1U3G0|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
          Length = 446

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 114/336 (33%), Gaps = 31/336 (9%)

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTT   ++     +  +     G+          L  +    D  + EL    L 
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVGGNIGTP-----ALDLLEQGADLYVLELSSFQLE 169

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               L  L     A +  ++  H+  +        AK  I+ G +      +N DD+   
Sbjct: 170 TTEELGALA----ATVLNVSDDHMDRYPDKMAYFQAKQRIYRGCKN---AIVNLDDALST 222

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +     A        FG ++  + +    +   E +W+   L+   +      +G H  
Sbjct: 223 PM-----ARDTLRFLCFGFNR-VNPETFSTRDDDEGTWITWGLENLLLASELQLMGRHNI 276

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N++  L +       ++  ++    F    G   R     N      I++S   N  + 
Sbjct: 277 SNVMAALALGYAAGLAMEPMLEVARRF---RGLPHRCESVRNLDGVDYINDSKGTNVGAT 333

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L        G+ I + G     G+   +    LAE ++      + L G     
Sbjct: 334 VAAIESL----VPESGKVILIAG-----GDGKGADFQPLAEPVAAC-CRALVLIGRDAGK 383

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  A+  S+  H + ++       + +   GD V++
Sbjct: 384 ISRAVGASVPQHRATSLQEAVSLARQAAEPGDRVLL 419


>gi|332083234|gb|EGI88465.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 457

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVSGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|325299142|ref|YP_004259059.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides salanitronis
           DSM 18170]
 gi|324318695|gb|ADY36586.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides salanitronis
           DSM 18170]
          Length = 458

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 122/367 (33%), Gaps = 40/367 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   L      + + G+ GKTTT  M    L        C            +   +
Sbjct: 101 RAQVLGMLTQTERGLCVAGTHGKTTTSTMAAYLLDHS--HVGCNAFLGGISKNYESNLLL 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               DF + E       E     H + P+ +VIT     HL  +        +  +    
Sbjct: 159 SEKSDFVVIEA-----DEFDRSFHWLTPYASVITATDSDHLDIYGDHASYVESFRKYTSL 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQ 275
           ++  G + +       + +  +       T+Y++   +  DF     +  + +   + + 
Sbjct: 214 IKPGGYLIV------KKGIDLRPEVQEGVTVYTYATEEG-DFHAANIRIGNGEICFDFIS 266

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G   ++      Y   +N +  + +  +  A  +    A+  F   +   +R+   L 
Sbjct: 267 PLGNIEDIRLGVPVYVNIENGIAAMALAQLGGAFPEEIRAAMPGFKGVD---RRFDFKLK 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                 + + Y  +PA ++ ++S +  + P  + +  AV      +   ++ F+ D A+ 
Sbjct: 324 NDRIVFLSD-YAHHPAEIRQSVSSIRMLYP--DKKITAVF--QPHLYTRTRDFYQDFADS 378

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------- 439
                   +L +Y      + G     + D L   I        + L   +++       
Sbjct: 379 LSLLDEVILLDIYPAREKPIEGVSSRLIFDRLRPGIEKSLCR-KEDLLDVLRNKKLEVLV 437

Query: 440 SLVDGDV 446
           +L  GD+
Sbjct: 438 TLGAGDI 444


>gi|34540387|ref|NP_904866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
 gi|62900688|sp|Q7MWM5|MURD_PORGI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34396700|gb|AAQ65765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
          Length = 450

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 123/389 (31%), Gaps = 31/389 (7%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A ++     + +     + P+    V   +G ++++  A R    A ++ ITGS GKTTT
Sbjct: 62  AIILEAKEIIKSPGIPDTAPIIRQAVAKEIGIVSEIEFAGRYT-DAFMVCITGSNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L   L          G+    +   +          + + EL    L  +    +  
Sbjct: 121 TMWLYHTLCKAGLDVGLAGNVGFSLARQV----AYDPHPYYVIELSSFQLDNM----YDF 172

Query: 183 RPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R ++A++  I P HL  +    E  A AK  I    +         DD F     A+   
Sbjct: 173 RANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQPEDCFIYWEDDPFISRWVAEH-- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +  F      D       + +E   M +       E +    G H   N + T  
Sbjct: 231 PPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAI 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +    +   +AL  F        R            I++S   N  S   A+  + 
Sbjct: 291 AAKAMDIKNEAIREALQDFKNVP---HRLEKIARVKGVDYINDSKATNVNSTWYALESMK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                   R I +LG     G    + + D+ E L L  +  +   G     L       
Sbjct: 348 T-------RVILILG-----GTDKGNDYTDI-ENLVLSKVDGLIFLGIDNEKLHKFFDGK 394

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  +  + +M             GD V++
Sbjct: 395 ISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|325202111|gb|ADY97565.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M01-240149]
 gi|325208135|gb|ADZ03587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis NZ-05/33]
          Length = 458

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 127/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP   V+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIICNG---QQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +   + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +H  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHGKLLDALR 458


>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 452

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 127/350 (36%), Gaps = 38/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KA IIAITG+ GKTTT  ++   L +  K  +  G+    +   +  A      D+ + 
Sbjct: 106 TKAPIIAITGTNGKTTTTTLIGEILKNDGKNISVAGNIGTPL---IQEADKNGSKDYIVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L  I       +P I+VI  I   HL+     E    AKA I E  ++     L
Sbjct: 163 EVSSFQLENIVRF----KPKISVILNITEDHLNRHKTFENYIEAKARILENQDEEDFTVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           NYDD     L+ ++ +     I  F + +       +     +   + ++  G    ++ 
Sbjct: 219 NYDDPIVASLEKRARS----KIVFFSRKQE-----LQEGVYVKNDVIVIRENGNIYPILK 269

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L  + +  I  A+++   + L  FH  E    R            
Sbjct: 270 AKELGIKGSHNLENALAAVAVAWITKANLNNLAETLKDFHGVE---HRLEYVDTIDGVKF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   NP + + A+  +       +G  I + G   +  +          +      +
Sbjct: 327 INDSKGTNPDAAQKALEAV-------DGPIILIAGGYDKKVDFRPFVRSFFGK------V 373

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     ++          V  + +M       + S   GD V++
Sbjct: 374 KKVVLIGATADQIERTAREEGFFEVEKAASMREAVEIAKRSAEPGDTVLL 423


>gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
          Length = 449

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 125/346 (36%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIG---YVASKVAQEARPDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   K   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++          + + ++       
Sbjct: 222 N----YHQRHLIESENLKAKTMY-FSTQQEVDGIYIKDGFIVYNGIRI-INVKD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    V   + +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFS---GIDHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q         I  L    + G        +L   ++   I  V
Sbjct: 327 SKATNTLATQFALNSFKQ--------PIIWLCGGLDRGNDFD----ELIPYMNNVRIMVV 374

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 375 F--GETQEKFAKLGNSQGKYVIKATDVEDAVDKIQEVIEPNDVVLL 418


>gi|240128167|ref|ZP_04740828.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686562|ref|ZP_06153424.1| hypothetical protein NGLG_01069 [Neisseria gonorrhoeae SK-93-1035]
 gi|268626846|gb|EEZ59246.1| hypothetical protein NGLG_01069 [Neisseria gonorrhoeae SK-93-1035]
          Length = 458

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 124/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTGHG-----WQIGEVNADGSFDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        DV TA +AL  F   +   +R          T
Sbjct: 279 GHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +   +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGADWDVAEALAPLGCRLRVGKDFDTFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|190149285|ref|YP_001967810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262598|ref|ZP_07544228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914416|gb|ACE60668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872021|gb|EFN03735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 436

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   ++T             G+    +     L+ +  + +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV-----LSLLNDEYELF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  I+  H+    + +EE   AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     L        +K +  F +  NA++ +R     S     +  +  K M 
Sbjct: 210 VIVNGED----RLTYPLETQAVKKLIRFAEH-NAEYTMRNGILYSGD---DAIIPTKEM- 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +        +  +KA        G   R++          +
Sbjct: 261 ---LISGRHNEMNSLAAMALAEAAGIPREGIVKA---LQMYGGLNHRFQAVKTNDGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI 
Sbjct: 315 NDSKATNVGSTVAALNGL-----QVAGTLYLLLG-----GDGKAADFSELKPLINKPNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G     L     +S+ V   ETM      I+  L  GD+V++
Sbjct: 364 VCYCFGQDGAQLAALSSQSVLV---ETMQQAIEQIRPQLKKGDMVLL 407


>gi|315646029|ref|ZP_07899150.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
 gi|315278790|gb|EFU42104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
          Length = 479

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 125/401 (31%), Gaps = 54/401 (13%)

Query: 78  IGSLSIPVFGVDDVLGALN-------KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + +  IP   V  V  AL        ++ VA  L  +A II ITGS GKTTT   +   L
Sbjct: 77  VKNPGIPY-SVPPVRKALELEIPIVTEVEVAYHL-CEAPIIGITGSNGKTTTTTWVGKLL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S   +    G+    +      A      ++ + EL    L      T   RP IA + 
Sbjct: 135 ESAGLSPIVAGNIGTPLSEAAAEATPD---NWMVVELSSFQLKG----TEEFRPRIACLL 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            IA  HL    G+++  S+KA +F       T  LN+DD     L     A  I    + 
Sbjct: 188 NIAETHLDYHGGMDDYISSKARLFVNQTADDTAVLNWDDPVCRNLVPYIKARIIPFSMTE 247

Query: 251 GKSKN-------ADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNML 297
              +        A       +   +     +   G+               G     N L
Sbjct: 248 SLREGVYLSTPYAPGSQDSDEDEGDVGRTIIYTDGEGFTHEIIRVENIGLPGRFNVDNAL 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               I        D    ALS F   E    R          +  + S   N  +   A+
Sbjct: 308 AACAIAIAAGVAPDQLEGALSSFRSVE---HRLEFVAELQGISYYNNSKATNSKATNMAL 364

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +   +         I + G   + G   +     +        +  V L G     + +A
Sbjct: 365 TSFKE-------PIILIAGG-LDRGSDYEDLIPSM-----QGRVKAVVLIGETKEKIANA 411

Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVD-------GDVVVV 449
             ++    +   +        + S++         GD+V++
Sbjct: 412 AAKAGLKDIILVDNGKDAAATLTSAVRKASELAESGDIVLL 452


>gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
 gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
          Length = 429

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 137/449 (30%), Gaps = 86/449 (19%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           I+ +S        F  I     D +  F   A++ GA                   +  +
Sbjct: 10  ITDNSNECQNGAYFMQI-----DANMKFADSALKNGA------------------KIISI 46

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+    LN       +     I+ ITG+ GKTTT   +   L  +       G+    I 
Sbjct: 47  DEAKKMLN-------INKNIKIVGITGTNGKTTTAAAIYSTLLDLGFKCGLSGTRGAFIN 99

Query: 149 VPLTLAR-----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 +                    D +F I E+    + + R     +   + + T 
Sbjct: 100 DCRIDEKGLTTSSVFKTIGYLYEASKEDCEFFIMEVSSHAIAQNRI--QGLNFALKIFTN 157

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +EE A  K+  F+         +N D       +  +    +K I ++ 
Sbjct: 158 LTQDHLDYHKTMEEYARVKSSFFKDDTPK---LINKDAGGITYNETNARTYALKQIATYS 214

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADV 310
                       K   +     ++     +++    +G     N++     V IL   D 
Sbjct: 215 ------VLAYSVKGAIDA---LLRTPDGEIQIESPLVGEFNLYNLMAAFAAVKILTNYDN 265

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +AL+ F   EG   R +      +  +    +   P  ++  ++ L       +  
Sbjct: 266 KKIAEALANFGGVEG---RVQIVSRNPYVVV---DFAHTPDGIEKVLNALK------DHE 313

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSI 422
            IAV G     G+  ++    +  ++  +  + +  S           +  ++  +    
Sbjct: 314 LIAVFGA---GGDRDKTKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKN 370

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +   E          S   +G++VV+  
Sbjct: 371 KIIKIENRAEAIKKAISLAKNGEMVVILG 399


>gi|15834464|ref|NP_313237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168760482|ref|ZP_02785489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217324395|ref|ZP_03440479.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|13364687|dbj|BAB38633.1| putative ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189368906|gb|EDU87322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217320616|gb|EEC29040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|326346707|gb|EGD70441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1044]
          Length = 457

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDHWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 448

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S +    +AE
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-ALRAPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDTVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|325130233|gb|EGC53003.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis OX99.30304]
          Length = 457

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 42/374 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK  
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        D+ TA +ALS F   +   +R          T
Sbjct: 279 GHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKNVK---RRMEIKGTVNGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIEGLRQ--RVGNARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL   + V+    G      +   P    ++  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEANQVFCYAGGVDWDVAEALAPLGGRLNVGKDFDAFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLL 464
            GF     +L++ L
Sbjct: 445 -GFGGIHTKLLDAL 457


>gi|153940305|ref|YP_001392870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum F str. Langeland]
 gi|166224760|sp|A7GJB0|MURD_CLOBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152936201|gb|ABS41699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum F str. Langeland]
          Length = 458

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 121/353 (34%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNEMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 INLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  + I     E       +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISHKKCEMEIVIVNSMEEAVKVADNIAEKGDII 429


>gi|315293602|gb|EFU52954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 153-1]
          Length = 445

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 141/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +      +    + DF + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEFSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 445


>gi|213163170|ref|ZP_03348880.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 517

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 132/399 (33%), Gaps = 39/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 71  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 130

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 131 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 187 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 247 LV-----GEQGHWQAK--KLTTDTSEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 300 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 354

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 355 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 407

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 408 DACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG 443


>gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis L2tet1]
 gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 803

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 42  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKENPEFLSAKSRGNRVVHRAELLAELA 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 102 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 156 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 210 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 261 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 316

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 317 EDYAHHPSEISC---TLRAVRTAVGQRRILAICQPHRFSRLRECIDSFPSAFKDADEVL- 372

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 373 ---LTEVYSAGEEAEDISYQELAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 424


>gi|332674264|gb|AEE71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 83]
          Length = 447

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYNDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + E+ S Y    V  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|313203975|ref|YP_004042632.1| udp-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
           propionicigenes WB4]
 gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
           propionicigenes WB4]
          Length = 444

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 119/351 (33%), Gaps = 30/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   +KA +I ITGS GKTTT  ++   L +        G+    + + +         
Sbjct: 95  FAGRYTKAKMICITGSNGKTTTTMLVYHILKNAGLKVGLAGNVGQSLALQVATDTF---- 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +       +  IA++  I P HL  +    +    +K  I +   +
Sbjct: 151 DYYVVELSSFQLDGMTEF----KADIAILLNITPDHLDRYEYNFQNYVDSKFRITQNQTE 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     +D   +   AK       T+Y F   ++   + + + +  E     ++    
Sbjct: 207 EDSFIFWENDPVIKAELAKRKIQS--TMYPFSIERSE--RTKAFIEQDELIIKTLKTLFT 262

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N +      SI+    ++  ++L  F   E R +      N    
Sbjct: 263 MPTTDLALQGMHNTYNSMAAGLAASIVNVRKESIRQSLQDFQGVEHRLEYVATVKN---I 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  S   A+  +           + +LG     G    + + ++ E L   
Sbjct: 320 RFVNDSKATNVNSCWYALQSMKT-------PVVLILG-----GTDKGNDYSEI-EELVKA 366

Query: 400 NISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           N+  +   G     L       I  +   ++M+            GD V++
Sbjct: 367 NVKALIFMGLDNSPLHKFFDGKIERIVDVQSMEDAVKEAYGLAESGDTVLL 417


>gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276]
 gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276s]
 gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11222]
          Length = 803

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 42  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKKNPEFLSAKSRGNRVVHRAELLAELA 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 102 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 156 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 210 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 261 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 316

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 317 EDYAHHPSEISC---TLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVL- 372

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 373 ---LTEVYSAGEEAEDISYQKLAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 424


>gi|59801227|ref|YP_207939.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|194098558|ref|YP_002001620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998940|ref|ZP_04718864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae 35/02]
 gi|240014150|ref|ZP_04721063.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae DGI18]
 gi|240016585|ref|ZP_04723125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae FA6140]
 gi|240112858|ref|ZP_04727348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae MS11]
 gi|240115614|ref|ZP_04729676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID18]
 gi|240117907|ref|ZP_04731969.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID1]
 gi|240121712|ref|ZP_04734674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID24-1]
 gi|240123466|ref|ZP_04736422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID332]
 gi|254493727|ref|ZP_05106898.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Neisseria
           gonorrhoeae 1291]
 gi|260440574|ref|ZP_05794390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae DGI2]
 gi|268594786|ref|ZP_06128953.1| hypothetical protein NGBG_01077 [Neisseria gonorrhoeae 35/02]
 gi|268598939|ref|ZP_06133106.1| hypothetical protein NGFG_00913 [Neisseria gonorrhoeae MS11]
 gi|268601293|ref|ZP_06135460.1| hypothetical protein NGGG_00951 [Neisseria gonorrhoeae PID18]
 gi|268603618|ref|ZP_06137785.1| hypothetical protein NGHG_00279 [Neisseria gonorrhoeae PID1]
 gi|268682094|ref|ZP_06148956.1| hypothetical protein NGJG_01073 [Neisseria gonorrhoeae PID332]
 gi|291043877|ref|ZP_06569593.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso [Neisseria
           gonorrhoeae DGI2]
 gi|293399087|ref|ZP_06643252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria gonorrhoeae F62]
 gi|59718122|gb|AAW89527.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|193933848|gb|ACF29672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226512767|gb|EEH62112.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268548175|gb|EEZ43593.1| hypothetical protein NGBG_01077 [Neisseria gonorrhoeae 35/02]
 gi|268583070|gb|EEZ47746.1| hypothetical protein NGFG_00913 [Neisseria gonorrhoeae MS11]
 gi|268585424|gb|EEZ50100.1| hypothetical protein NGGG_00951 [Neisseria gonorrhoeae PID18]
 gi|268587749|gb|EEZ52425.1| hypothetical protein NGHG_00279 [Neisseria gonorrhoeae PID1]
 gi|268622378|gb|EEZ54778.1| hypothetical protein NGJG_01073 [Neisseria gonorrhoeae PID332]
 gi|291012340|gb|EFE04329.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso [Neisseria
           gonorrhoeae DGI2]
 gi|291610501|gb|EFF39611.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria gonorrhoeae F62]
 gi|317164231|gb|ADV07772.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 458

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 124/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTGHG-----WQIGEVNADGSFDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        DV TA +AL  F   +   +R          T
Sbjct: 279 GHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +   +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGADWDVAEALAPLGCRLRVGKDFDTFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|323945968|gb|EGB42006.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H120]
          Length = 457

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LLLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|85858524|ref|YP_460726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
 gi|122063269|sp|Q2LR50|MURD_SYNAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85721615|gb|ABC76558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
          Length = 453

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 131/401 (32%), Gaps = 45/401 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D+ + A+ +    VV +  +      L   V     V+  L           +  +IAIT
Sbjct: 64  DYGISALAQ-VDAVVPSPGVPPFHPVLKEAVKRCIPVISELELACRY----LQTPMIAIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  ++   LS   +     G+    +   +T    P   D  + E+    L  
Sbjct: 119 GTNGKTTTTSLIGEILSGSGRKVFVGGNIGTPLVEYVT---GPQTADCAVVEISSFQL-- 173

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                      ++++      H++     E   + K  IF    K     LN D+    +
Sbjct: 174 --QWVDQFHAFVSILLNTTCDHVNYHGSFEAYRAVKERIFNNQGKQDVAILNADEPDSAV 231

Query: 235 LKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGI 288
           L     +     ++ F  +   +   +Q +    C +        +GK            
Sbjct: 232 LAESLSS----PVFFFSTTKMVERGLYQEKDRLICLDG-------EGKQEFYPLSMIRLP 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N++  +          +  I A+S F    G   R       G     D+S   
Sbjct: 281 GAHNVENVMAAILASRACGCSPENVINAISGFS---GIAHRIEFTREIGGVKFYDDSKGT 337

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  ++K AI   S          I ++G   + G+       +    L    +  + + G
Sbjct: 338 NVGAVKRAIETFSD-------PIILLMGGRDKDGDF------ETLSALLQDRVKALVIFG 384

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +++ +   +    + ++       +     GDVV++
Sbjct: 385 EARERIQERIGGIVPTVLTPSLKEAIAAARRQACAGDVVLL 425


>gi|317968396|ref|ZP_07969786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0205]
          Length = 460

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 132/412 (32%), Gaps = 54/412 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  N   +       + V+   DVL AL               I++ GS GKTTT  +
Sbjct: 62  SAVPANNPELLEAERAGLKVWHRSDVLAALIAAQ---------PSISVAGSHGKTTTSTL 112

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L +      A IG                 D    + E   S    ++F     + 
Sbjct: 113 VASLLHATNHDPTAVIGGVVPAFASNGR----NGDGPLLVAEADESDGSLVKF-----QS 163

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT +   H  ++S +  + +      +G E+   +  N D           H    
Sbjct: 164 WLGVITNLELDHTDHYSDLASLITTLQRFAKGSEQ---LLANRDCPVLREHFQAHHW--- 217

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
              +S   S+  DF     +   +++      QG+++ +      G H   N    +   
Sbjct: 218 ---WSIQSSEGVDFAAIADELDGDRTLATFYEQGEALGQFRLPLPGLHNLSNAAAAMAAC 274

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +         +A+         G+R+    N     ++D+ Y  +P+ ++A +++   +
Sbjct: 275 RLHGVSFAELQRAVEGLQAP---GRRFDYRGNWCGRQVVDD-YAHHPSEVQATLAMARLM 330

Query: 364 S-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---------ISHVWLS 407
                   P    R + V          +  F  D A+ LS  +              + 
Sbjct: 331 VSSGRSPLPEAPQRLLVVF--QPHRYSRTAEFLSDFAQALSQADAVLIAPLYTAGEAPIP 388

Query: 408 GFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           G    AL   + R    + V   + ++ L   I  +   GD+V+   +    
Sbjct: 389 GISSAALAAEIQRIAPGLPVSAFDDLETLADAIGQTSQAGDLVLAMGAGDVN 440


>gi|227113988|ref|ZP_03827644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 438

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 129/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +       
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-----ALQLLEQPAQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH---ADL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V  +     
Sbjct: 209 CVVNADDALTMPVRGADA-----RCRSFGVDVG-DYHLNRQQ---GETWLRVDGERVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ A  +     I
Sbjct: 260 REIKLVGQHNYTNALAALALADAVKIPRASALTALTSFT---GLPHRFQMAFERNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L+      EG    +LG   +  + S      L   L   +I 
Sbjct: 317 NDSKATNVGSTEAALSGLA-----VEGSLHLLLGGDGKSADFSP-----LVPYLQGEHI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           H++  G     L    P       ++TM+     I   +  GD+V++
Sbjct: 366 HLYCFGQDGQQLAALRPEISE--QTKTMEQAMRIIAERVKPGDMVLL 410


>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
          Length = 458

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 126/357 (35%), Gaps = 59/357 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  +TGS GKTTT  ++   L          G+    +    T        D  + E
Sbjct: 116 PAKVYGVTGSDGKTTTTTLIYNILKQQGYKTWVGGNIGTPLF---TEIEKMKSDDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +T  V P +AV+T ++P HL     ++E   +K  IF+  +    + LN
Sbjct: 173 LSSFQL-----MTMNVSPEVAVVTNLSPNHLDIHKDMQEYIDSKKNIFKYQQSESLLILN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
            D++    +  ++       +  F   +             + ++ E   + ++ K +  
Sbjct: 228 RDNNLTNSMFNEAKG----RVLEFSIKEK----------VKDGAYFEENKLYIKEKEV-C 272

Query: 284 VHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             + I   G H  +N+L     VS    +++   K    F   E R +  R         
Sbjct: 273 KLNEIQIKGMHNVENLLAAFCAVSD-DVNIENMRKTAISFTGVEHRCEFIREI---DGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE---MGELSQSFHIDLAEVLS 397
             ++S   +P+   A +    +         I + G   +   +  L++  +        
Sbjct: 329 YYNDSIATSPSRTLAGLKAFEK-------PVILIAGGYDKKIPLDVLAEEGYE------- 374

Query: 398 LYNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             NI  + L G     +KDA  +        I +   E+++      +    +GD++
Sbjct: 375 --NIKALILVGATKDKIKDAFSKVMKKKNIEIPMVIEESLEKALSSARGFAKEGDII 429


>gi|294674973|ref|YP_003575589.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
 gi|294472650|gb|ADE82039.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
          Length = 457

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 128/371 (34%), Gaps = 42/371 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           +  V   L      + + G+ GKTTT  M    +   +    A +G  + + G    L+ 
Sbjct: 101 RAQVLGTLTKSHKGLCVAGTHGKTTTSTMCAHIMHQSQLDCNAFLGGISKNYGTNYILS- 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D D+ + E       E     H +RP ++VIT+  P HL  +   E    +     E
Sbjct: 160 ---DSDYVVIEA-----DEFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTE 211

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++  G + ++ D      L+ K +      IY +  ++  DF     +  + +   +  
Sbjct: 212 LIQPGGALIIHRD------LEMKQNVQEGVRIYDYSLNEG-DFHAENIRIDNGEITFDFI 264

Query: 276 LQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +S++ V  G       +N +  + +  +     D             G  +R+   +
Sbjct: 265 SPIESVKNVQLGQPVPINIENGIAAMAMAQLNGCTADELKYG---MQTYGGVDRRFDFKI 321

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + + Y  +P  +  +   + ++  +      A+      +   ++ F+ D A+
Sbjct: 322 KTDKLVFLSD-YAHHPKEIYQSAKSIREL--YKNKHITAIF--QPHLYTRTRDFYKDFAD 376

Query: 395 VLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS          Y    + + G     + D L   +     +  D     +   + D D
Sbjct: 377 ALSQLDEVILTEIYPARELPIEGVTSQLIYDNLKPGVQKKMIQKAD-----VLDYIKDHD 431

Query: 446 --VVVVKSSNS 454
             V++V  +  
Sbjct: 432 FEVLIVLGAGD 442


>gi|332749822|gb|EGJ80235.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333011221|gb|EGK30635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-272]
          Length = 381

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 132/379 (34%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L          G     +     ++    + DF + E   
Sbjct: 29  VLAVAGTHGKTTTAGMATWILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADE 85

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I    
Sbjct: 86  YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPE 145

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   +   A       + +      +   +Q +  K  ++ S  EV L G+ + EV   
Sbjct: 146 NDINLKQTMAMGCWSEQELV-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWS 198

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  AL  F       +R          T+ D+ +
Sbjct: 199 LVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-F 254

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R IAVL      M  MG         L          
Sbjct: 255 AHHPTAILATLAALRG-KVGGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------AD 306

Query: 403 HVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF
Sbjct: 307 EVFLLQPAHIPWQVAEVAEACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GF 362

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++  A Q
Sbjct: 363 GGIHQKLLDGLAKKAEAAQ 381


>gi|283834853|ref|ZP_06354594.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
 gi|291069104|gb|EFE07213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
          Length = 458

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 141/416 (33%), Gaps = 38/416 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEACGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+++ VV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVWLDGENVGVVKWGLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVVPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPR 420
            G  R IAVL      M  MG         L           V+L    H+      +  
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVAE 401

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPA 470
           +     H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A
Sbjct: 402 ACVQPAHWSGDVDALADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAQA 455


>gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae
           DSM 15829]
 gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
 gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
          Length = 493

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 122/336 (36%), Gaps = 31/336 (9%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                   + +   A R R +   +AITG+ GKTTT  ++   + +  K    +G+    
Sbjct: 93  ACKHCREVIGEPEFAWRCRPQ-KWVAITGTNGKTTTTTLIEHMIRADHKQACAVGNIGRA 151

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
               +          + + EL    L E    T L+ PH A++  I P H+     ++  
Sbjct: 152 CLGEVDHHLAD---TWFVAELSSFQLAE----TKLLHPHAAILLNITPDHIEWHGSMQAY 204

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A+AK  IF  L       ++ DD + + + ++    G+  +       + D +  +   C
Sbjct: 205 AAAKERIFANLTTDDLAIISRDDLYCKAIYSRLVERGLSPVC---VDTSQDPKTLQAAYC 261

Query: 267 SEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           S+ S + V+L G +  ++        G H  QNML    +   +   VD   + L  F  
Sbjct: 262 SD-SMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASALALFIGVSVDAIRQVLQTFTT 320

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R          + +++S   N  S++ A++          G  I +LG   +  
Sbjct: 321 LE---HRLEYVATIHGVSFVNDSKATNTDSVEKALTAF------PCGSTIVLLGGHDKQT 371

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +LS   H  +               G     +   L
Sbjct: 372 DLSSLVHQVV------RKCRGAICFGEAGQRIYHEL 401


>gi|315585881|gb|ADU40262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Helicobacter pylori 35A]
          Length = 447

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    V  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13]
 gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9768]
 gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11074]
 gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9301]
          Length = 803

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 42  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKKNPEFLSAKSRGNRVVHRAELLAELA 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 102 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 156 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 210 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 261 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 316

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 317 EDYAHHPSEISC---TLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVL- 372

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 373 ---LTEVYSAGEEAEDISYQKLAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 424


>gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia
           trachomatis D/UW-3/CX]
          Length = 803

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 42  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKKNPEFLSAKSRGNRVVHRAELLAELA 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 102 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 156 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 210 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 261 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 316

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 317 EDYAHHPSEISC---TLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVL- 372

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 373 ---LTEVYSAGEEAEDISYQKLAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 424


>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
 gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
          Length = 460

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 32/347 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + ATI+ ITGS GKTTT  ++   L          G+        +      V  +  + 
Sbjct: 116 TSATIVGITGSNGKTTTTMLVHRILKDAGLNVGLAGNIGVSFAQQV----AEVSHENYVV 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I   +     HIA++T I P HL  +    E+  ++K  I +  +++  + 
Sbjct: 172 ELSSFQLDGIEKFSS----HIAILTNITPDHLDRYEYDFEKYVASKFRITQNQKESDYLI 227

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD        +         +S  K       L+        +   +++   ++ V 
Sbjct: 228 YDADDIAINTWLKQHKIKAKLVPFSLKKELAYGAFLKGNNIIININKETIKMPISTITVK 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N +       +L    +   ++L+ F   E    R            I++
Sbjct: 288 ----GKHNVKNTMAATMAAQLLQIRKEAIKESLANFEGVE---HRLENVAKVKGVEYIND 340

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A+  + + +    G            G    + + DL  ++    +  +
Sbjct: 341 SKATNVNATFYALECMDRQTVWIVG------------GVDKGNDYNDLLPLVRE-KVKAI 387

Query: 405 WLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
              G     +KD     + +   ET   +           DGD V++
Sbjct: 388 VCLGVDNQKIKDMFGNVVDI-VVETAGAEEAVKVAHKLAEDGDAVLL 433


>gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 448

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 128/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +V+  + EL    L      T  +   +A +  I+  H+  ++G+     AK  IF
Sbjct: 151 LLSDEVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFNGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S      +A+
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+           + GD V++
Sbjct: 371 YCRAA-----VLLGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
 gi|226711909|sp|B2KEW4|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
          Length = 452

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 105/315 (33%), Gaps = 30/315 (9%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           K    +G+    +   ++  +     D  + E+    L +    +   +P+ A I  I P
Sbjct: 141 KNVFTVGNIGCPLAEVMSEIK---QHDLIVMEVSSYQLED----SSYFKPYAATILNITP 193

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H+ +    ++   AK++IF+   +     +N  D           +     +Y F  + 
Sbjct: 194 DHIDHHGSFKKYLDAKSKIFKFQTQKDIAVINSADKNCLKAAKNIKS----KLYGFATTP 249

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                L++ +        E+              G H  +N +    +      D  +  
Sbjct: 250 -----LQQIRSHVFYDGDELVFSAGERISPPKLPGIHNVENAMAASLLALAAGVDSQSIQ 304

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A + F   E    R      +   + I++S   N  S   A+  +         +   +
Sbjct: 305 QAFNKFKTVE---HRIELLGIKKGISFINDSKATNIDSTIIALRSM-----PDGKKTWLI 356

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LG     G+   S +  L  +L       V L G     +K  LP   + +   T+D   
Sbjct: 357 LG-----GQDKGSPYGVLLPLL-ETKCKKVLLVGQAAAKIKKDLPGYKYFNVCGTIDKAV 410

Query: 435 LFIQSSLVDGDVVVV 449
            +  ++    D++++
Sbjct: 411 EYAFNNAQKEDIILL 425


>gi|282882890|ref|ZP_06291495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297301|gb|EFA89792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
          Length = 438

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 142/386 (36%), Gaps = 49/386 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ L  A ++ S   +IAITG+ GKTTT  ++   L  + KTY  +G+    I     +A
Sbjct: 86  ISDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQILRQVNKTY-VVGNIGRGISE---IA 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E     L +    TH  +P +A++T +   HL      +   +AK +IF
Sbjct: 142 LEAKNNDFIVIEASSFQLED----THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIF 197

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LRKWKQCSEQSW 271
              +K     +NYDD   + LK          IY F   K  D +   L   K   +   
Sbjct: 198 ANQDKDDFSIINYDDRSRDDLKDLKS-----NIYYFSTEKK-DIRGCYLDDGKIIFKDGD 251

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  +             G H  +N++  + I  I     D   +++ +F   E    R  
Sbjct: 252 IREE---IIDIKDIKIPGIHNVKNVMGAIIIAKIFNVSNDIIKQSIKIFSGVE---HRIE 305

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                   +  ++S   NP S   A+  ++         +  ++G   + G    S   +
Sbjct: 306 FVKKVNGVSFYNDSKGTNPDSTLVAVKAMTN--------KTILIGGGYDKGSDFNSLMEN 357

Query: 392 LAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           +A      N+  + + G       K+A    I V   + +        S    GD +++ 
Sbjct: 358 IAP-----NLRSLIVFGQTGPKMAKEAKNYGIEVFIVKDLPAAVKLGVSLAKKGDSILLS 412

Query: 450 --KSS---------NSCGFYRLINLL 464
              +S             F +++  L
Sbjct: 413 PACASWDMYSSYEERGKHFKKIVKEL 438


>gi|312888793|ref|ZP_07748356.1| UDP-N-acetylmuramate/alanine ligase [Mucilaginibacter paludis DSM
           18603]
 gi|311298668|gb|EFQ75774.1| UDP-N-acetylmuramate/alanine ligase [Mucilaginibacter paludis DSM
           18603]
          Length = 452

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 114/328 (34%), Gaps = 39/328 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +      IA+ G+ GKTTT  M+   L S           +    +       
Sbjct: 102 RSEVLGIISKDLITIAVAGTHGKTTTSSMIAHILKSSG--------IDCSAFLGGIATNY 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +V FG  ++ +    E       + P +A+IT++   HL  +   E +  +       
Sbjct: 154 NTNVLFGKSKVVVIEADEYDRSFLTLHPDVAIITSMDADHLDIYGDHERLKESFQLFASQ 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L+  G +  +               L I +  ++G +  AD      +  +   W     
Sbjct: 214 LKIGGRLIYH-------------KGLPIHSGDTYGINTFADAIGDNIRIENGAFWFNFNN 260

Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             +++  +  GI G H   N +  +     L    D   KAL+ F   +   +R+   + 
Sbjct: 261 GKETINNIQLGIAGIHNIDNAVAAIQAALYLKVKPDAIHKALTSFRGVK---RRFEYVVK 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 ID+ Y  +P  ++A IS + Q+ P    +   V      +   ++ F    A+V
Sbjct: 318 TDKHIYIDD-YAHHPEELRACISSIKQLYP--GKKLTTVF--QPHLFTRTRDFVDGFADV 372

Query: 396 L---------SLYNISHVWLSGFHVLAL 414
           L          +Y    + + G +   +
Sbjct: 373 LDMSDELLLMDIYPARELPIEGVNADMI 400


>gi|283783875|ref|YP_003363740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
 gi|282947329|emb|CBG86874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
          Length = 438

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 130/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +    +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDAGRELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A I  +   H+  +  G+++  +AK  ++E       
Sbjct: 156 VLELSSFQL----ETTYSLQAEAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN---ASV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPVRGADA-----RCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R++ AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVDGTLHLLLGGDGKSADFSP-----LGRYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       ++TM+     I   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--IAEQTQTMEEAMRLIAPRVKPGDMVLL 410


>gi|256825476|ref|YP_003149436.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
 gi|256688869|gb|ACV06671.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
          Length = 518

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 135/410 (32%), Gaps = 55/410 (13%)

Query: 88  VDDVLGA-------LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           V ++  A       L++    A        I + G+ GKT+T  M+  AL +  +     
Sbjct: 107 VPELRAARERGLPVLHQAQALALATQGRRRIVVAGANGKTSTSAMVAWALRAAGRDCGYA 166

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                 IG  L       +V      +      +  F+T+  RP +AV+T + P HL  +
Sbjct: 167 ------IGAELVGRGRNAEVGTAPEFVIEGDESDGSFVTY--RPEVAVLTNVRPDHLDLY 218

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DF 258
              E +  A  E    + + G +    DD        +         Y FG    A  D 
Sbjct: 219 GSFETVQRAYDEFLATIPRGGVLIACSDDPGARAAADRQRDRLRVITYGFGVEGQATPDL 278

Query: 259 QLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT--------- 307
            L     +    +S ++  + G+++ +     G H   N      +V   +         
Sbjct: 279 HLGTPDHRGMVWESVLQDNISGRTLNLRVKVPGAHNLLNAAAAHAVVVHASATGAHGAGG 338

Query: 308 -------------ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                         D      +L+      G  +R++     G   ++D+ Y  N   + 
Sbjct: 339 DAAGADATVVEGPVDPALEAASLAGLADFAGASRRFQVRGEAGGVVVVDD-YAHNGDKVA 397

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVW 405
           A +   + ++     R   V+     +   ++ F  + A          +L ++      
Sbjct: 398 AVVRTGAALARETGHR--VVVAFQPHLFSRTRDFAAEFAAGLDAADEVLLLPVFGAREEP 455

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L G     + D L  S       +++ L   +  S   GD+V++  + + 
Sbjct: 456 LPGVSSQLIADRLTTSHRA--VGSLEELPDAVVESARPGDLVLLVGAGNV 503


>gi|126741293|ref|ZP_01756971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
 gi|126717611|gb|EBA14335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
          Length = 465

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 114/373 (30%), Gaps = 37/373 (9%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV     +  A         +     ++AITGS GK+TT  +L   L S+ +     G+
Sbjct: 95  VPVDNDIGLFFASFAHQGWDMMDQPPKVVAITGSNGKSTTVALLHHILESVGRDSQMAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +         P D    + EL          L   + P +A++T ++  HL   +G
Sbjct: 155 IGRGVLDIDP----PADGGVVVLELSSYQ----TELARALTPDVAILTNLSEDHLERHAG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
           +    +AK  +F          +  D+     L  + S A     +      K       
Sbjct: 207 LGGYFAAKRRLFAEGGPD-RAIIGIDEDEGLFLAGQLSQAAVDDRVIRISAKKK--LTGP 263

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W+  + + ++    +G+      +  +    G H  QN         +L        +A
Sbjct: 264 GWQIFARKGFLSEYRKGRQVASIDLRQMTGLPGEHNHQNACAAYAAARVLGLAPRVIEQA 323

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   G   R +          +++S   N  S   A+S   +I     G       
Sbjct: 324 ---LDSYPGLPHRSQTIAEAAGVRYVNDSKATNLDSAIKALSAFPKIRWICGGLE----- 375

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
              E G  +              N+   ++ G        A+   +      TM+     
Sbjct: 376 --KEGGLSALQG--------QTKNVQKAYVIGREAAGF--AMQLDVEAEVCTTMEQAVAR 423

Query: 437 IQSSLVDGDVVVV 449
                  G+ V++
Sbjct: 424 AMEDAQSGETVLL 436


>gi|145297832|ref|YP_001140673.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850604|gb|ABO88925.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 456

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 139/413 (33%), Gaps = 38/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   +     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDRNLPYISGPQWLLEHVLQDRWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L   K      IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 VLEYAKLEPGFLIGGVPGNFPVSARLGSAP----FFVIEADEYDCAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +   G +     D     ++       ++
Sbjct: 180 TLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQADDNLTAVRKMGCWSEVE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +         D + +  K   + S  EV L G K  EV    IG H   N LM +    
Sbjct: 240 LV------GQDDAKWKAVKLADDGSAFEVWLDGSKQGEVHWECIGEHNVNNGLMAIAAAR 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+  I AL  F   +   +R          ++ D+ +  +P +++  +  L   +
Sbjct: 294 HAGVMVEHGIAALRQFKSPK---RRMELKGEVAGISVYDD-FAHHPTAIETTLGGLR--A 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLY-NISHVWL-----SGFHVLALKD 416
             G+ R +AVL    E    +     H +  E+ + +     V+       G+ +  +  
Sbjct: 348 KVGKARILAVL----EPRSNTMKLGVHKE--ELAACFDGADEVFFFQPPNIGWDLGEVTA 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + R   V     ++ L   + +   DGD +++  SN  GF  + + L+    
Sbjct: 402 HMSRPAKV--FNELETLINRLVAECRDGDHILIM-SNG-GFGGIHDKLIARLK 450


>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
           asymbiotica]
          Length = 423

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 117/347 (33%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   IIAITGS GK+T   ++     +        G+          L  +       
Sbjct: 88  REATTPIIAITGSNGKSTVTSLVGEMAKAAGWQVGVGGNIGLP-----ALELLKQSCQLY 142

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A +  +   H+  +  G+ +  +AK  ++   ++   
Sbjct: 143 VLELSSFQL----ETTYSLKAAAATVLNVTEDHMDRYPQGLSQYRAAKLRVYHQAKR--- 195

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D+                  S G           ++  SE ++++V  Q     
Sbjct: 196 CIVNVQDTL-----TLPETGMDSRCVSVGVDCG------DYQLDSENAFLKVHNQSLLAA 244

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L+ L +   +    + ++   +      G   R++          I
Sbjct: 245 NEIKLTGRHNYVNGLVALALADAVGIPREASL---ATLTVYPGLNHRFQLVHLNNGVRWI 301

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     + EG    +LG   +  + S        + +      
Sbjct: 302 NDSKATNVGSTEAALNGL-----NLEGTLYLLLGGDGKSADFSPLKPFLCGDKV------ 350

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   LV GD+V++
Sbjct: 351 RLYCFGRDGKRLAQLRPE--IATLTETMEQAIRDIAPRLVAGDMVLL 395


>gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 433

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 64/458 (13%), Positives = 143/458 (31%), Gaps = 86/458 (18%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +P      I+ +S+      AF  +   +     ++ +A   GA  ++   D+    G 
Sbjct: 4   EIPDEAFRYITENSQECDADTAFV-LTPQNE---KYLQNAKDNGAHSIINIKDVAKLFGI 59

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             I                          I+ ITG+ GKTTT   +   L  +    A  
Sbjct: 60  EKI-------------------------KIVGITGTNGKTTTASAIYSFLLDLGYRVAMQ 94

Query: 141 GS----YNNHIGVPLTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           G+     N+ +    TL               +    DF I E+    +  ++     + 
Sbjct: 95  GTRGFFMNDRVIEEKTLTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAI--VQKRVEGLN 152

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + ++T I   HL     + E  + K   F+     G   +N D            +  
Sbjct: 153 FELKILTNITQDHLDFHKTLGEYIAVKNSFFQ---DDGRKLINKD--------ETKSSFN 201

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K  +++G   +A ++L  +   +  S + +Q   + +       G+    N++  +   
Sbjct: 202 FKNTFTYGIENSATYRLIAYSLNNASSGI-IQHFSEVVPFTSSLHGFFNLYNLMAAIAAT 260

Query: 304 SIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +L    ++     +  F    GR ++   + N      +   +   P  ++  ++ L +
Sbjct: 261 HLLSGKKLEEVTAVVDNFAGVSGRMEQVSESPN------VIVDFAHTPDGIQQVLNALKE 314

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413
                    + V G   +     +     +A  L+      ++++  +            
Sbjct: 315 ------KELLVVFGAGGDRDRTKRPLMGRVAASLAK----KLYITSDNPRTEDPQDIVND 364

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + + +     V              S   + +VVV+  
Sbjct: 365 ILEGIQDKSIVQVELNRRKAIENALSEQKENEVVVILG 402


>gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70]
 gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s]
          Length = 803

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 42  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKENPEFLSAKSRGNRVVHRAELLAELA 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 102 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 156 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 210 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 261 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 316

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 317 EDYAHHPSEISC---TLRAVRTAVRQRRILAICQPHRFSRLRECIDSFPSAFKDADEVL- 372

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 373 ---LTEVYSAGEEAEDISYQELAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 424


>gi|219849719|ref|YP_002464152.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
 gi|254765990|sp|B8G5Y3|MURC_CHLAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219543978|gb|ACL25716.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
          Length = 474

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 149/448 (33%), Gaps = 56/448 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A  +GA  V+    +      L+         +  L++  +     ++  +IA
Sbjct: 52  GHD---PAYVRGADAVLATAAIRGEHPELTAAAAL---GIPRLSRADLWREWSAQRPVIA 105

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  M  +AL       AC       +      A+        + E      
Sbjct: 106 VAGTHGKTTTSAMTALALRGGG--VACGFLIGADVPALGGSAQWGDPTAPLVIEA----- 158

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E   +   + P +A++T +   H   +    + A+A AE    +     + L  DD   
Sbjct: 159 DEYDRVFLALTPAMAIVTNVEWDHPDIYPTATDYAAAFAEFAAQVRDRRRLLLCADDPGT 218

Query: 233 ELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKS 280
             L     A        +G  +              D+   +    +E    ++    + 
Sbjct: 219 AALDVDGQAR------WYGIDEQIACDPVSCRLAPLDWTASRVTVTAEGQQFDLWYYDRR 272

Query: 281 -------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                  + V     G H  +N    L   ++  AD+  A    +      G  +R+   
Sbjct: 273 TFARRFALMVTLAVPGIHNVRNATAALAAAALWGADLQAA---GAALATYRGSSRRFEVY 329

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--D 391
                 T+ID+ Y  +P  ++A I+   Q  P   GRR+ V             +    +
Sbjct: 330 GEVAGVTVIDD-YAHHPTEVQATIAAAQQRYP---GRRVVVYVQPHTFSRTRSLWERWPE 385

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDG 444
                ++ +I  V+ +      +  A       +   +  HY   +      + + +  G
Sbjct: 386 ACRAAAIVSIGDVYPAREQGDPVALATELVAYLVAYGVVAHYGGGIATAAERLVALIQPG 445

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           DVV+V  +      R+  +++ +   +Q
Sbjct: 446 DVVLVLGAGDSN--RVAAMVIAQLQRVQ 471


>gi|302877576|ref|YP_003846140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580365|gb|ADL54376.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
          Length = 463

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 148/430 (34%), Gaps = 50/430 (11%)

Query: 33  DSRSIAPQ-----------EAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           DSR+  P            + FF A     +DG + I  A+  G  L       +A   +
Sbjct: 36  DSRTTPPGLDQVAQFVPADQLFFGAFTDTLFDGIELI--AISPGVPLA---DPYIARAAA 90

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             IPV G  ++     +   A+       ++AITGS GKTT   ++     +        
Sbjct: 91  RGIPVVGDIEL---FAQQLRASHAPLPGKVLAITGSNGKTTVTSLVEHLCRAAGLDAVAA 147

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ +  +   + L R     +  + EL    L   R LT       A +  ++  HL  +
Sbjct: 148 GNISPAVLD-VVLQRGDKQPEVWVLELSSFQLETTRSLTA----DAATVLNVSEDHLDRY 202

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G++E A+AK +I  G        LN DD+     ++ +         SFG +K A    
Sbjct: 203 LGMDEYAAAKQQILGGCRLQ---VLNRDDA-----RSIAMKHTTSDCVSFGLNKPASESD 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              ++  +  W+                G H   N L  L +   +   +   + AL  F
Sbjct: 255 FGIEREGDDIWLVQGCSRLIKASEMQLAGLHNVANALAALALCRAIDLPMPVLLAALRSF 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R          T  D+S   N  +  AA++ L           + + G + +
Sbjct: 315 ---KGLPHRVEKVAVLHGVTFYDDSKGTNVGATVAALAGL-------GCPAVLIAGGVGK 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQS 439
             + S        +    ++   V L G     +  AL    + + ++  M         
Sbjct: 365 EQDFSP------LKSAVTHHARAVVLIGRDAPLIAAALAGGDVPLIHAADMQDAVQLAAK 418

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 419 IAQYGDAVLL 428


>gi|166365245|ref|YP_001657518.1| UDP-N-acetylmuramate--L-alanine ligase [Microcystis aeruginosa
           NIES-843]
 gi|189029000|sp|B0JHH4|MURC_MICAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166087618|dbj|BAG02326.1| UDP-N-acetylmuramate-alanine ligase [Microcystis aeruginosa
           NIES-843]
          Length = 478

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 131/410 (31%), Gaps = 52/410 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +     +   L  P+F   DVL AL               IA+ G+ GKTTT  ++   L
Sbjct: 95  HNKEYQAARDLGYPIFHRSDVLAALIA---------DYDSIAVAGTHGKTTTSSLIGYVL 145

Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                     +G   +       L +       G F +  +   +     H   P I VI
Sbjct: 146 LEAGLDPTIIVGGEVDAWEGNARLGQ-------GRFLVAEADESDGSLTKHA--PKIGVI 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   H  ++  + E+     E     +    +    D          + A   +   S
Sbjct: 197 TNIELDHPDHYQNLSEVIDTFHEFAHQCQ---ILVACLDCD--------TIAEHFRPTIS 245

Query: 250 FGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     K AD+ + +           V  +G  + ++     G H   N L  + I   L
Sbjct: 246 YSLDPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKIPGQHNISNALAVVAIGRYL 305

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS-MKAAISVLSQISP 365
             +      A++ F    G  +R+         T ID+ Y  +P+  +    +   ++  
Sbjct: 306 GLEFAVIADAIATF---AGAKRRFEHKGEANGITFIDD-YAHHPSELLATLAAAKLKVEG 361

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF-------HVLALK 415
               R IA+          + +F  +     S  ++   + ++ +G             +
Sbjct: 362 KQYQRSIAIF--QPHRYSRTTAFLEEFGSAFSSADVVVLTDIYSAGEVNINHVTGQQVAE 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  + +Y   +  L  F+   L  GD+ +   +      ++I  +L
Sbjct: 420 QVRKHHKNAYYHPELSSLGQFLLEILQPGDLALFLGAG--NLNQVIPEML 467


>gi|62900456|sp|Q5FUJ7|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 93/273 (34%), Gaps = 37/273 (13%)

Query: 98  LAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           L  A R   SKA  IA+TG+ GK+TT  ++    ++  +  A  G+             +
Sbjct: 101 LYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLG----TASLALPL 156

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D    + E+    L  +         + A +  + P HL     +   A+AKA +F+ 
Sbjct: 157 LPDDGVYVIEMSSYMLERLDRF----HANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDN 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +       +  DD +   + ++  + G++ +                         E+  
Sbjct: 213 MGPDDLAVIGMDDDWCRAIASQVASRGVQVV-------------------------ELDA 247

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H AQN+   L I S L  D       L  F    G   R +     
Sbjct: 248 DALPPYDGPALPGRHNAQNVGAALTIASHLGLDEAAIRTGLKSF---PGLEHRLQKVAEC 304

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              + I++S   N  ++  A++   ++     G
Sbjct: 305 DGVSFINDSKATNAEAVSKALAAYDKVMWIAGG 337


>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 457

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 122/352 (34%), Gaps = 43/352 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TL 153
           +++++A +       I +TG+ GKTT   ML   L+S +   A  G+           ++
Sbjct: 93  SEISLAWKALKHIPWIGVTGTNGKTTVTHMLHHVLNSNQINTAMGGNVGIPASQIALDSI 152

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + ++ + EL    L      +  + P I + TT+ P HL     +E  +  K  +
Sbjct: 153 RSSRTEPNWLVMELSSYQL----ETSPNISPKIGIWTTLTPDHLERHGSLENYSDIKKRL 208

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRKWKQCSEQS 270
              LE +     N DD F +   A+S  +    + + G    +  ADF +         S
Sbjct: 209 ---LENSSIRIYNLDDHFLKN--ARSKLMEGIWVSTNGAAINNNQADFWIT--------S 255

Query: 271 WMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             ++  +G+ +    + +  G H  QN+L+       +        +A++ F        
Sbjct: 256 KGKLYEKGEEILDTTLLNIPGRHNLQNLLLVTAAAREIGLSPRDIEQAIASFKGVP---H 312

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     N     + ++S   N  + K  +  +           I + G   + G  +   
Sbjct: 313 RLEKIANIKGIEIFNDSKATNYEAAKIGLEAV-------PSPTIVIAGGQSKKGNPNDWL 365

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFI 437
                          V L G     L D +  S     V+   +++     +
Sbjct: 366 Q------ALNKKACAVVLFGASANTLFDLIRDSKFSGPVNCFPSLNDAIETV 411


>gi|320177642|gb|EFW52632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella boydii ATCC 9905]
          Length = 457

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + D  + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDLFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|300950241|ref|ZP_07164180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
 gi|300957152|ref|ZP_07169391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300316096|gb|EFJ65880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300450431|gb|EFK14051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
          Length = 445

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + +F + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEVSARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGIAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 445


>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
 gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
          Length = 444

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   ++A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTQAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQSLAFQV----AKCNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYGYQMQNYVDAKFRIIQNQTD 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD   +    + H  GI    Y F + +              + +    +  
Sbjct: 208 ADAFIFWNDDPVIQR---ELHKYGIHGHYYPFAEKREEGLAAF---VEENKVYFTEPIAF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      +I     +   +AL+ F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANIAGIRKECIREALNDFKGVE---HRLEKVCRVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + + +LG     G+   + + ++A+++  
Sbjct: 319 VEYINDSKATNVNSCWYALQSMKT-------KTVLILG-----GKDKGNDYNEIADLVRE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              S +   G H   L D      + +   ++M             G+ V++
Sbjct: 367 -KCSGLIFMGLHNEKLHDFFDGFGLPIVDVQSMKDAVDAAYQMAKKGETVLL 417


>gi|89075543|ref|ZP_01161948.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
 gi|89048683|gb|EAR54255.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
          Length = 462

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 134/405 (33%), Gaps = 52/405 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 76  LVVIGNAMSRGNPCVEYVLNSNLRYTSGPQWLQEYLLHDRWVMAVSGTHGKTTTASMLAW 135

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 136 ILEDCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-----FLNYDDSFFELLKAKSHA 241
            ++  +   H   F  ++ I      +   +   G I       N D++      ++   
Sbjct: 193 LIMNNLEFDHADIFDDLKAIQRQFHHLVRTVPGNGRILAPKGVKNIDETLEMGCWSELEY 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTL 300
           +G             D   R  K  ++ S  +V L    +  VH   +G H   N LM +
Sbjct: 253 IG------------GDGHWRAEKHHADGSVFDVYLDSDIVGTVHWPLVGDHNVNNALMAI 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    +    D A +AL+ F   +   +R          T+ D+ +  +P +++  +  L
Sbjct: 301 GAARHVGVTPDLACEALAKFINTK---RRLELKGEVNGVTVYDD-FAHHPTAIELTLGGL 356

Query: 361 SQISPHGEGRRIAVL----GDMCEMG----ELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411
              +   + R +AVL      M  +G    +L+ S H              V+     ++
Sbjct: 357 R--AKVNQSRILAVLEPRSNTMK-LGVHKDDLAPSLHA----------ADQVFFFQPPNI 403

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + +        + S  +D L   I S    GD ++V  SN 
Sbjct: 404 PWSVEEIAEQCSQPAYCSADLDDLVNNITSKAQPGDTILVM-SNG 447


>gi|146305955|ref|YP_001186420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina ymp]
 gi|145574156|gb|ABP83688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           mendocina ymp]
          Length = 448

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 123/346 (35%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++    ++  K  A  G+          L  +  DV+  
Sbjct: 105 RHAKAPIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALDLLADDVELY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   +
Sbjct: 160 VLELSSFQL----ETTDQLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---V 212

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    L A        T + FG  K  DF+     + + +  +  + +      
Sbjct: 213 VVNRDDALSRPLIADQ-----VTCWEFGLGK-PDFKRFGLLEENGEKSLAFRFEALLPVS 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +   ++  +   +      G   R +    +      D
Sbjct: 267 ELKIRGAHNQSNALAALALGHAVGLPMEAML---ATLRQFAGLPHRCQWVGERAGVNYYD 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +     G+ + + G   +  + S +    +A          
Sbjct: 324 DSKATN---VGAALAAIEGLGADIAGKLVLIAGGDGKGADFS-ALKAPVARFCRA----- 374

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL  +  +    T+D            GD V++
Sbjct: 375 VVLLGRDAELIAAALGDAAPLVRVTTLDEAVQRCSELAEAGDAVLL 420


>gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 518

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 148/474 (31%), Gaps = 65/474 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V          +L +
Sbjct: 34  QHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSYQNEATALIV 91

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142
                     AL   A      +    I ITG+ GKT+T      AL+       A I +
Sbjct: 92  TNIQRA---MALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148

Query: 143 YNN----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N            +  P +L      R  VD       + +S    +    + +   I 
Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDRVYSLHFGIG 208

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGI 244
           V   I+  H+              K ++   L  +    LN   D F E+ +A   +   
Sbjct: 209 VFLNISSDHVGQNEHPDFANYLFCKEQL---LLNSSVCVLNTQMDHFEEVYQAAKVSTAP 265

Query: 245 KTIYSFGK---SKNADFQLRKWKQCSEQSWMEVQ----------LQGKSMEVVHHGIGYH 291
             IY FG+     + D   +        S  ++           L G   E      G +
Sbjct: 266 DKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDG---EYQSSVAGDY 322

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N        +I      T  +A    H   GR +  R   +      +   Y  + A
Sbjct: 323 NVGNATAAAICAAIGGVKKKTIQEAFGQVH-IAGRMEVIRTQEHG----TVYVDYAHDYA 377

Query: 352 SMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           S+K  ++ L  Q       +   VLG     G    S   DL + L+   ++ V L+   
Sbjct: 378 SVKRLLAFLKGQQYQGEPSQITVVLGAP---GNKGVSRRPDLGKALAEERVNRVILTTDD 434

Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+   +   I       V Y             +   GD+VV+  K 
Sbjct: 435 PAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKG 488


>gi|254426827|ref|ZP_05040534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
 gi|196192996|gb|EDX87955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
          Length = 441

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 130/363 (35%), Gaps = 37/363 (10%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D    +  + + AR  S+  ++AITGS  K+T   +L     +        G+    
Sbjct: 86  QVVDGKEVIGDIELFARAASEP-LVAITGSNAKSTVTTLLGQVADACGMNPGIGGNLGV- 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
                 L  +       + EL    L      T+ +   +A I  ++  HL  ++   + 
Sbjct: 144 ----AALELLDDQARLYVLELSSFQL----ETTYSLSAEVATILNVSQDHLDRYASFADY 195

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +AK  +++G +       N DD     L  +  A   + I SFG    AD++L      
Sbjct: 196 LAAKQRVYDGCQ---VAVWNRDD-----LATRPPATVARQI-SFGAHPEADYRL-----D 241

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           SE   +  + +           G+H A N+L  L I   L+ + D A+  +  F    G 
Sbjct: 242 SENGQLLCRGEPLLSLSELALTGHHNAMNILSVLAISDALSLNRDKALATVKAFT---GL 298

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +     G     ++S   N   + A ++ L+ I    EG+ I V G   +  + S 
Sbjct: 299 PHRCQLVAEAGGVRWFNDSKATN---VGATLAALTGIGESIEGKVILVAGGQGKGQDFSP 355

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LAE    Y +    L G     +   +  +        M        +    GD 
Sbjct: 356 -----LAEPARQY-LRAALLMGEDRNTVAQGMSAAP-CELVADMAAAVARAHALAQPGDA 408

Query: 447 VVV 449
           V++
Sbjct: 409 VLL 411


>gi|167626522|ref|YP_001677022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596523|gb|ABZ86521.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 456

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 133/375 (35%), Gaps = 38/375 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D  + + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSGYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G ++EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLAISITKHTLDYSKFELCDINGNNVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEVIKDALESFKGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P S+K  +  +   +   +   IA++      M + G+   +  + + E      
Sbjct: 332 -FAHHPTSIKLTLEAVR--NKAKDAYVIALIDPRSNTMRQ-GDNKDNLPMSIIE------ 381

Query: 401 ISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSC 455
              V L    +L    K+ L  S +V +  ++D     +   L    D ++ +V  SN  
Sbjct: 382 ADRVLLYNHSLLKWDAKEVLKNSNNVDFIVSVDDFVDCVDELLTKYRDRNIQLVMMSNGS 441

Query: 456 --GF-YRLINLLLEE 467
             G   +L+ LL  +
Sbjct: 442 FDGLREKLVKLLETK 456


>gi|217033874|ref|ZP_03439298.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
 gi|216943637|gb|EEC23082.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
          Length = 447

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKQIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPTNAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLNPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    +  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILDALENLKDDEVLLILG 415


>gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
 gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
          Length = 453

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 161/430 (37%), Gaps = 59/430 (13%)

Query: 33  DSRSIAPQEAFFAIKGPHYDG--HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR++ P            D    +F   A+  G        +    + S  +PV     
Sbjct: 36  DSRALPPG----------LDAVRQEFPGMAIHLGPFTAAAFKEAELIVASPGVPVAE-PQ 84

Query: 91  VLGALNKLA--------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  A+ +           A    + A +IAITG+ GK+T   ++     +        G+
Sbjct: 85  VQAAIERGVPVVGDVELFAQARSAHAKVIAITGANGKSTVTTLVGEICKAAGFKTVVAGN 144

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +     L  +   VD  + EL    L      T+ +    A +  I+  H+  ++ 
Sbjct: 145 IGLPV-----LDVINDAVDVYVLELSSFQL----ETTYSLAADAATVLNISADHMDRYAD 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++  A+AKA IF    + G   LN DD++   + A+  A       +FG   +A    + 
Sbjct: 196 MQAYANAKARIF---TRAGLQVLNADDAWSRGMAAEGVAQ-----LTFGL--DAPRSAQD 245

Query: 263 WKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +    +     +    + +  V   +  G H A N L  L + ++L  D   A++AL  F
Sbjct: 246 FGLLHDAGEAWLARGQRKLMPVADLNITGLHNAANALAALALCTVLDIDEVVALQALRDF 305

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R +   +    +  D+S   N  +  AA+  L++       + + + G   +
Sbjct: 306 ---KGLPHRVQWVADIDGVSFYDDSKGTNVGATVAALHGLNR-------KLVLIAGGDGK 355

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQS 439
             + + +    +A+         V L G     + DAL    + + Y +T++   +   +
Sbjct: 356 GQDFA-ALRAPVAKHARA-----VVLIGRDAGVIADALQESGVLLEYGDTLEEAVVKAFN 409

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 410 LADRGDAVLL 419


>gi|254230042|ref|ZP_04923441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262392462|ref|YP_003284316.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|151937430|gb|EDN56289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262336056|gb|ACY49851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
          Length = 452

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 147/411 (35%), Gaps = 35/411 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLNEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     D     +  +    G  
Sbjct: 180 TLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQDQALADVLER----GCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           T   F      D+Q    K   + S  EV LQG+ +  V    +G H   N LM +    
Sbjct: 236 TEKQFS-GVEGDWQAH--KLVVDGSKFEVALQGEKVGTVEWDLVGDHNVDNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F   +   +R          T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPELACQALGRFINTK---RRLELKGEVQGVTVYDD-FAHHPTAIELTVGGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVL--ALKDALPRS 421
             GE R +AVL        + +  H + LA+  SL++   V+L     +  +++D   + 
Sbjct: 347 KVGEKRILAVLE--PRSATMKRGVHKNTLAD--SLHSADEVFLFQPDNIEWSVQDITEQC 402

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
               + +  +D     I      GD ++V  SN  GF     +++  L ++
Sbjct: 403 QQPAFVDADIDNFVAKIVERAQPGDQILVM-SNG-GFGGIHGKILEQLKQK 451


>gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1058]
 gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1059]
          Length = 481

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 94/507 (18%), Positives = 180/507 (35%), Gaps = 86/507 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQTLSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANNRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N D   F+++K +  ++           ++  +         +      ++ GK +   
Sbjct: 241 VNSDMDHFQIVKEQVASM-----------EHDFYGAGSSNTIIDSQAFSFEVAGKLAGRY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG+   +N     L  L +     A ++   K ++        G+        G  
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRL----GASLEDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSSNSCGF---YRLI----NLLLEEF 468
            K +++       ++     N L E++
Sbjct: 454 GKGADAYQIIEGEKVTYPGDNALAEKY 480


>gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           D(s)2923]
 gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           Sweden2]
 gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/150]
 gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/11023]
          Length = 803

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLG--ALNKLAVAARLR 105
           +     KGA   + N +     G++ +         P F      G   +++  + A L 
Sbjct: 42  VEKLKNKGAEFFLGNQEEHIPEGAVVVYSSSISKENPEFLSAKSRGNRVVHRAELLAELA 101

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                I +TGS GKTT   ++T  L   KK  +  IG  N       +        ++ +
Sbjct: 102 QDQISIFVTGSHGKTTVSSLITAILQEAKKNPSFAIGGLNQEGINGGS------GSEYFV 155

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S  G IR  T    P  +VIT I   HLSNF G  E+  A  + F  L+     +
Sbjct: 156 AEADESD-GSIRCYT----PEFSVITNIDDEHLSNFEGDRELLLASLKDFA-LKTQQICW 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
            N D                   ++FG   + D  +  + Q   + +   + Q     ++
Sbjct: 210 YNGDCPRLRSCLQG---------HTFGLDSSCDLHILSYYQEGWRLYFTAKYQDVVYADI 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N    +GI   L  D      A   F   + R +R     N     L  
Sbjct: 261 EVQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQR----KNSSETFLFL 316

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV------LGDMCEMGELSQSFHIDLAEVLS 397
           E Y  +P+ +      L  +      RRI           + E  +   S   D  EVL 
Sbjct: 317 EDYAHHPSEISC---TLRAVRTAVRQRRILAICQPHRFSRLRECIDSFPSAFKDADEVL- 372

Query: 398 LYNISHVWLSGFHV-----LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
              ++ V+ +G          L +A+ +   +   +      L   ++ S+   DV
Sbjct: 373 ---LTEVYSAGEEAEDISYQELAEAISQESIVKCTHIP-FHELQRHLEQSIRVHDV 424


>gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
 gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
          Length = 417

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 123/357 (34%), Gaps = 60/357 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWM 272
                                  H  GIK    +   + A ++    L    +       
Sbjct: 197 --SNDFFVY------------DVHNNGIKYAGEYQIIRGAIYRNSTKLLDIAET------ 236

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+++ L I+  L  D++ AI ++  F   +G   R + 
Sbjct: 237 -------------KLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKI 280

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T I++S   N  +  AA++ ++          I +LG + + G+ S      +
Sbjct: 281 VKKVNDTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----M 330

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L  Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 331 IKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLL 386


>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
 gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
          Length = 439

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 128/347 (36%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L R   +    
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGQMAKAAGWAVGIGGNIGLP---ALSLLR--QECQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH +R   A +  +   H+  +  G+++   AK  ++E     G 
Sbjct: 156 VLELSSFQL----ETTHSLRTAAATMLNVTEDHMDRYPFGLQQYRVAKLRVYEN---AGV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L        ++W+ V+ +     
Sbjct: 209 CVVNTDDTLTLPVRGTDA-----RCVSFGVDVG-DYHL---NCQQGETWLRVRGEKVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +     +++KAL+ F    G   R++          I
Sbjct: 260 REMKLTGCHNYTNALAALALADAVNIPRASSLKALTTFT---GLPHRFQWVWECNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+  L       EG    +LG   +  + S      L   L   N+ 
Sbjct: 317 NDSKATNVGSTEAALKGL-----QVEGMLHLLLGGDGKSADFSP-----LVRYLQGDNV- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ET++     I   +  GD+V++
Sbjct: 366 RLYCFGRDGAQLVQLRP--AVATLTETLEQAMRDIACRVQPGDMVLL 410


>gi|53729121|ref|ZP_00134085.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207504|ref|YP_001052729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae L20]
 gi|307249215|ref|ZP_07531212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|126096296|gb|ABN73124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|306858739|gb|EFM90798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   ++T             G+    +     L+ +  + +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV-----LSLLNDEYELF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  I+  H+    + +EE   AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     L        +K +  F +  NA++ +R     S     +  +  K M 
Sbjct: 210 VIVNGED----RLTYPLETQAVKKLIRFAEH-NAEYTMRNGILYSGD---DAIIPTKEM- 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +        +  +KA        G   R++          +
Sbjct: 261 ---LISGRHNEMNSLAAMALAEAAGIPREGIVKA---LQVYGGLNHRFQAVKTNDGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI 
Sbjct: 315 NDSKATNVGSTVAALNGL-----QVAGTLYLLLG-----GDGKAADFSELKPLINKPNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G     L     +S+ V   ETM      I+  L  GD+V++
Sbjct: 364 VCYCFGQDGAQLAALSSQSVLV---ETMQQAIEQIRPQLKKGDMVLL 407


>gi|188496127|ref|ZP_03003397.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|193069798|ref|ZP_03050748.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|331671140|ref|ZP_08371973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
 gi|188491326|gb|EDU66429.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|192956852|gb|EDV87305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|309704739|emb|CBJ04090.1| murein peptide ligase [Escherichia coli ETEC H10407]
 gi|331061729|gb|EGI33655.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
          Length = 457

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + +F + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|332991938|gb|AEF01993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas sp.
           SN2]
          Length = 470

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 124/366 (33%), Gaps = 46/366 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--- 151
           +  + + ARL +  T I ITGS GKTT   + T  L +        G+    +   L   
Sbjct: 92  IGDVELFARLNNTPT-IGITGSNGKTTVTLLTTHMLKACGYEVCEAGNVGRPVLETLPES 150

Query: 152 --TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L  +   +D  + EL    L      T  ++ + A I  I+  HL     +++  +A
Sbjct: 151 MAELETLSSSLDVIVLELSSFQL----ETTSSLKLNAASILNISDDHLDRHGDMQQYTAA 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  IF       T  +   D      K  + A   +   ++G        +        +
Sbjct: 207 KQRIFSHCH---TAVVWRGD------KQVTPASNCENTITYGLD------MSDTGFGLRE 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI----KALSVFHPKEG 325
             + +  +           G H   N++ +L +    +  ++        A +V      
Sbjct: 252 GVITINGEALLNTADIRLAGMHNVLNVMASLALCQAFSTSLNKPALLNTAARAVASFTSA 311

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +    A N      ID+S   N  +  AAI  L   +P   G+ I + G   +  +LS
Sbjct: 312 PHRCVEIA-NINGVKWIDDSKATNVGATIAAIQGL---APTTNGKIILIAGGDSKGADLS 367

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-- 443
                   +     ++  V   G            +  V    +M+     + ++L    
Sbjct: 368 A------LKPALDESVGEVIALGKDAEKFSAVFRDTTIV---ASMEKAV--LAANLRAGN 416

Query: 444 GDVVVV 449
           GD+V++
Sbjct: 417 GDIVLL 422


>gi|307244817|ref|ZP_07526916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253771|ref|ZP_07535625.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258228|ref|ZP_07539971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260467|ref|ZP_07542162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306854262|gb|EFM86468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863255|gb|EFM95195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867688|gb|EFM99533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869870|gb|EFN01652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   ++T             G+    +     L+ +  + +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV-----LSLLNDEYELF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  I+  H+    + +EE   AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     L        +K +  F +  NA++ +R     S     +  +  K M 
Sbjct: 210 VIVNGED----RLTYPLETQAVKKLIRFAEH-NAEYTMRNGILYSGD---DAIIPTKEM- 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +        +  +KA        G   R++          +
Sbjct: 261 ---LISGRHNEMNSLAAMALAEAAGIPREGIVKA---LQVYGGLNHRFQAVKTNDGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI 
Sbjct: 315 NDSKATNVGSTVAALNGL-----QVAGTLYLLLG-----GDGKAADFSELKPLINKPNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G     L     +S+ V   ETM      I+  L  GD+V++
Sbjct: 364 VCYCFGQDGAQLAALSSQSVLV---ETMQQAIEQIRPQLKKGDMVLL 407


>gi|295111740|emb|CBL28490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synergistetes
           bacterium SGP1]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 131/352 (37%), Gaps = 39/352 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            + +  +I +TGS GK+T   ++   L++  +  A  G+      V         + D  
Sbjct: 109 PQLRGRLIGVTGSNGKSTVTALIGHMLNAAHRNVAVGGNLGRAASVFA-----GREFDAV 163

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      TH +   ++++T +AP HL+     E   +AKA+I      +G  
Sbjct: 164 VLELSSFQL----EWTHTLSSCVSIVTNLAPDHLNWHGSYEAYVAAKAKILSLRAPSGWG 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D   E LKA     G + + +    +     +       E+    ++L G+   +
Sbjct: 220 IV--QDRDVEALKA----GGEERVITLSWEERPKHGMAGHIFMGEE-EATLRLNGEMTPL 272

Query: 284 V----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H  +N+ M++  + +L  D D    A ++         R   A      
Sbjct: 273 FRYSETTLLGAHNLENVAMSVAALRLLGLDED----AKTLLKGFFPLPHRCERAGTVDGV 328

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D+S   N A+   A++ L        GR++ +LG   + GE   +    +       
Sbjct: 329 LYVDDSKGTNVAASVTAMTAL-------PGRKVVILGGRGK-GEDYAALAEGVLREA--- 377

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
                 L G    A+  AL  +    V  ++ M+      Q+    G  V++
Sbjct: 378 --DAAVLLGEERDAIAGALRGAGFTAVTLAQDMEDAVRKAQTLARPGMTVLL 427


>gi|165975474|ref|YP_001651067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251838|ref|ZP_07338009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307249139|ref|ZP_07531146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|165875575|gb|ABY68623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649268|gb|EFL79453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854427|gb|EFM86623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   ++T             G+    +     L+ +  + +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV-----LSLLNDEYELF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  I+  H+    + +EE   AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     L        +K +  F +  NA++ +R     S     +  +  K M 
Sbjct: 210 VIVNGED----RLTYPLETQAVKKLIRFAEH-NAEYTMRNGILYSGD---DAIIPTKEM- 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +        +  +KA        G   R++          +
Sbjct: 261 ---LISGRHNEMNSLAAMALAEAAGIPREGIVKA---LQVYGGLNHRFQAVKTNDGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI 
Sbjct: 315 NDSKATNVGSTVAALNGL-----QVAGTLYLLLG-----GDGKAADFSELKPLINKPNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G     L     +S+ V   ETM      I+  L  GD+V++
Sbjct: 364 VCYCFGQDGAQLAALSSQSVLV---ETMQQAIEQIRPQLKKGDMVLL 407


>gi|91786994|ref|YP_547946.1| UDP-N-acetylmuramate [Polaromonas sp. JS666]
 gi|91696219|gb|ABE43048.1| UDP-N-acetylmuramate [Polaromonas sp. JS666]
          Length = 475

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 129/379 (34%), Gaps = 24/379 (6%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                    ++A+ G+ GKTTT  MLT  L          G     + +   ++    + 
Sbjct: 112 THHATGPRHVLAVAGTHGKTTTTAMLTWILEQAGLQ---PGFLVGGVPLNFGVSARLGEG 168

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +  + E            +  V  RP  A++  +   H   F  + +I      +   + 
Sbjct: 169 NTFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVP 228

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +N  +     + A       + +  FG S         +    E +  +V   G
Sbjct: 229 SQGRIVVNAGEESLRRVLA--QGCWSEQVL-FGNSPLNQ---SGFTAQGEPNDFKVLKAG 282

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +++  V  GI G H   N L  +     +    + A +AL+ F   + R +        G
Sbjct: 283 QAVAHVQWGISGVHNQLNALAAIAAAEHVGVPPEVAARALAEFQNVKRRMEVRGVVHAHG 342

Query: 338 FFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
               + + +  +P ++   +  L +    +     R +A+     E    +       A+
Sbjct: 343 GDITVYDDFAHHPTAIHTTVDGLRRQLKGAGKDGDRILAIF----EPRSNTMKLGSMTAQ 398

Query: 395 V---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +   L   +++     G    A    +P       ++ +D L   +++S   GD ++   
Sbjct: 399 LPWSLEQADLAFCHAGGLDWDARAALMPMGARAQVADNIDQLVAQVKASARPGDHLLCM- 457

Query: 452 SNSCGFYRLINLLLEEFPA 470
           SN  GF  +   LLE    
Sbjct: 458 SNG-GFGGIHARLLEALKP 475


>gi|194434433|ref|ZP_03066695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1012]
 gi|194417349|gb|EDX33456.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1012]
 gi|332098109|gb|EGJ03082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 155-74]
          Length = 438

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +     A              L  +  + +  
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKA-----AGGNVGVGGNIGLPALMLLDDECELY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +    
Sbjct: 156 VLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 209 CVVNADDALTMPIRG-----ADERCVSFGVNMG------DYHLNHQQGETWLRVKGEKVL 257

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +         +++KAL+ F    G   R+   L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P       +ETM+     +   +  GD+V++
Sbjct: 365 V-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
 gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
          Length = 451

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 114/342 (33%), Gaps = 35/342 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITGS GKTT   ++              G+    + +     R     D  + EL 
Sbjct: 117 KIIAITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTPV-LEAYEDRQEQSADVWVLELS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     L        A +  I+  HL+ +  + + A AK +IF G   +G   +N D
Sbjct: 176 SFQLENTDHLNAAA----AAVLNISEDHLNRYDDLLDYAHAKDKIFRG---SGVQVINAD 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +K        + +  F   +  D+        +   +++   +           
Sbjct: 229 DALCRAMK-----RSGREVRRFSLQQETDYW-----FDAASGYLKHGAETLIAAADIPLQ 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N+L  L +   +    +  ++ +  F   +G   R      +     ID+S   
Sbjct: 279 GLHNAANVLAALALCEAIGLPREQLLRHVRTF---KGLPHRVEKIGEKNGVVFIDDSKGT 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + +AAI+ L             + G   +  + +        + +       V L G
Sbjct: 336 NVGATEAAIAGLQS-------PLFLIAGGQGKGQDFTP------LKNVLPGKARAVLLIG 382

Query: 409 FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + +D     + +    ++             GD+V++
Sbjct: 383 EDAPQIRRDLAGCGVEMMDCASLQEAVQTAYRLAEPGDIVLL 424


>gi|314933359|ref|ZP_07840724.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
 gi|313653509|gb|EFS17266.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
          Length = 449

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 123/345 (35%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A II +TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIGVTGTNGKTTVTSLIGDMFKKSIITGRLSGNIG---YVASKVAQEAKADEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I    +  +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGI----NEYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N    + +    ++  L  KT+Y   + +     ++          + + ++        
Sbjct: 222 N----YHQRHLIETENLKAKTLYFSTQQEVNGIYIKDGFIVFNGVRI-INVKD------L 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +    +    V   + +L+ F    G   R +           ++S
Sbjct: 271 VLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFS---GIDHRLQYIGTNRTNKYYNDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A++   Q         I  L    + G            +  + N+  + 
Sbjct: 328 KATNTLATQFALNSFQQ--------PIIWLCGGLDRGNDFDEL------IPYMNNVRVMI 373

Query: 406 LSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 374 VFGETQEKFAKLGNSQGKYVIKATNVEDAVDKIQDIIEPNDVVLL 418


>gi|313634141|gb|EFS00802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria seeligeri FSL N1-067]
          Length = 147

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R      +    +++++YN++P +++  +     +   G+  +  VL DM E+GELS   
Sbjct: 7   RLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMDSKGKP-KYLVLADMLELGELSVPL 65

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGD 445
           H + AEVL    I  ++L G  + A        I    V + +T + L   +   +   +
Sbjct: 66  HQESAEVLEEGTIEKIFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKEITGNE 125

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            ++VK S   G   ++  L+
Sbjct: 126 WILVKGSYGMGLKDVVENLI 145


>gi|167817533|ref|ZP_02449213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 91]
          Length = 162

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                L  F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S      
Sbjct: 1   AIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP---- 56

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           R+ V+G+M E+G+   +FH ++        I  ++  G       DA       H+ +  
Sbjct: 57  RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDAA 115

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   + ++      ++VK S      R+++ L  E
Sbjct: 116 ALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 152


>gi|15612452|ref|NP_224105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori J99]
 gi|8134585|sp|Q9ZJC6|MURE_HELPJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4156007|gb|AAD06968.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
          Length = 447

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 137/404 (33%), Gaps = 54/404 (13%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +     P+    + L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K 
Sbjct: 37  PLNEKYAPLIAEKN-LAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKK 95

Query: 137 YACIGSYNNHIG---------VPLTLARMPVDVDFGI------FELGMSHLGEIRFLTHL 181
            A +G+    I             TL  +  D++  I      F + +S    ++     
Sbjct: 96  TALLGTRGFFIDDKHIKEKGLTTPTLLELYSDLEEAIRLKCEYFIMEVSSHAIVQKRIAG 155

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKS 239
           +   + ++T I   HL     IE    AK   F   +  G   +N D  ++ F  + A++
Sbjct: 156 LDFALKILTNITSDHLDFHQNIENYRDAKNSFF---KDEGLKVINRDETNALFNPINART 212

Query: 240 HALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +AL  K    + +F  + +    L       + +  E  L      +    +G +   N+
Sbjct: 213 YALDKKAHLNVQAFSLNPSISASLCYQHDLRDPNLKETAL------IHSPLLGRYNLYNI 266

Query: 297 LM-TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           L   LG+  +    ++T    L  F+  +GR +            L+   +      M+ 
Sbjct: 267 LAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQ 320

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------- 408
                         +  A+ G     G+  ++    +  + S Y    +  S        
Sbjct: 321 VFESFKNQ------KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENE 371

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  +   +  S  V   +      L    +L D +V+++  
Sbjct: 372 EDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILG 415


>gi|157692194|ref|YP_001486656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pumilus SAFR-032]
 gi|167017287|sp|A8FCX9|MURD_BACP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157680952|gb|ABV62096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           SAFR-032]
          Length = 451

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 131/390 (33%), Gaps = 42/390 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTT 121
           +  + D+   I +  IP   V  V  AL +          A   + +  I ITGS GKTT
Sbjct: 68  IFEDKDITILIKNPGIPYENVM-VQEALRRQIPVWTEIELAYHLTSSPFIGITGSNGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L    +     G+      V   +A      ++ + EL    L      T  
Sbjct: 127 TTTLIYEMLKKDSQKTLVAGNIGT---VASEVAANADGDEWIVTELSSFQLMG----TVE 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I++I  I  AHL      EE   AK ++F    +     +N DD     L   S A
Sbjct: 180 FRPKISLILNIFDAHLDYHHTREEYEKAKQKVFVHQHEDDIAVINLDDPSVVKLAEGSKA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              K ++ F   +     +         +   +      ++ V    G H  +N+L  + 
Sbjct: 240 ---KKVF-FSVKEP----VEHGAFIQHGAIYYMNEHIIDVKDVV-LPGEHNQENILAAIC 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V       D  +  L+ F   + R +      ++ F+   ++S   N  +   A+S   
Sbjct: 291 VVKNAGCSNDAIVHVLTTFGGVKHRLQFVDTIQSRKFY---NDSKATNILATSKALSAFE 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q +         +L    + G         +       ++  +   G             
Sbjct: 348 QPT--------ILLAGGLDRGNEFDELKPFM------KHVKGMITFGETAPKFVKLGEEL 393

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              HV + + ++       +   + DV+++
Sbjct: 394 GIHHVKHVDNVEQAVPAAFNISEEEDVILL 423


>gi|170021756|ref|YP_001726710.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
 gi|169756684|gb|ACA79383.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
          Length = 457

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + +F + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
           oxydans 621H]
 gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter
           oxydans 621H]
          Length = 476

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 92/267 (34%), Gaps = 37/267 (13%)

Query: 98  LAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           L  A R   SKA  IA+TG+ GK+TT  ++    ++  +  A  G+             +
Sbjct: 129 LYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLG----TASLALPL 184

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D    + E+    L  +         + A +  + P HL     +   A+AKA +F+ 
Sbjct: 185 LPDDGVYVIEMSSYMLERLDRF----HANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDN 240

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +       +  DD +   + ++  + G++ +                         E+  
Sbjct: 241 MGPDDLAVIGMDDDWCRAIASQVASRGVQVV-------------------------ELDA 275

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H AQN+   L I S L  D       L  F    G   R +     
Sbjct: 276 DALPPYDGPALPGRHNAQNVGAALTIASHLGLDEAAIRTGLKSF---PGLEHRLQKVAEC 332

Query: 337 GFFTLIDESYNANPASMKAAISVLSQI 363
              + I++S   N  ++  A++   ++
Sbjct: 333 DGVSFINDSKATNAEAVSKALAAYDKV 359


>gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 448

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 128/355 (36%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +V+  + EL    L      T  +   +A +  I+  H+  ++G+     AK  IF
Sbjct: 151 LLSDEVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S      +A+
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+           + GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK330]
          Length = 481

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 165/484 (34%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVDFGIFE 166
                 LS      A + + N  +                    +    +  D    I E
Sbjct: 127 YFAYQILSQS-HHPALLSTMNTTLDGETFFKSTLTTPESLDLITMMAQALANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +   L           ++  +        ++      +  GK +   
Sbjct: 241 VNSGMDHFQIVKEQVACL-----------EHDFYGAGSSNTITDSQAFSFEATGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A +    K ++          R      +   
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLKDIKKGIAATRVPG----RMEVLTQKNGA 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 342 KIFVD-YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGRLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|82546520|ref|YP_410467.1| ligase [Shigella boydii Sb227]
 gi|187734017|ref|YP_001882983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|81247931|gb|ABB68639.1| putative ligase [Shigella boydii Sb227]
 gi|187431009|gb|ACD10283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|320185327|gb|EFW60099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella flexneri CDC
           796-83]
 gi|332087042|gb|EGI92176.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 457

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +         AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADTANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 431

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 109/313 (34%), Gaps = 44/313 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLAR------- 155
           K  II ITG+ GKTTT   +   L  +    A  G+     N+ +    TL         
Sbjct: 61  KIKIIGITGTNGKTTTASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTTPSVLNTY 120

Query: 156 ------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 +    ++ I E+    L  ++     ++  + ++T I   HL     IEE  + 
Sbjct: 121 KHIYQAVCAGCEYFIMEVSSHAL--VQRRIEGLKFELKILTNITQDHLDYHKTIEEYIAV 178

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K   F+   K     +N D+           A   K  Y++G    A ++L  +    E 
Sbjct: 179 KNGFFQDESKK---LINKDEP--------KAAFNFKNAYTYGIENPATYRLMAYSLN-EG 226

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGK 328
           S   +Q   + +       G+    N++  +    ++T   ++     +  F    GR +
Sbjct: 227 SSGIIQHFQEIVPFTASLHGFFNLYNLMAAIAATHLITDKTLEEIADVVDNFAGVSGRME 286

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           +   A N      +   +   P  M+  ++ L +         I V G   +   L +  
Sbjct: 287 QVCAAPN------VIVDFAHTPDGMQQVLNALKE------KELIVVFGAGGDRDRLKRPI 334

Query: 389 HIDLAEVLSLYNI 401
              +A  L+   I
Sbjct: 335 MGRVAASLAKKVI 347


>gi|21909788|ref|NP_664056.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS315]
 gi|28896519|ref|NP_802869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           SSI-1]
 gi|25453115|sp|Q8K8J5|MURC_STRP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21903973|gb|AAM78859.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes MGAS315]
 gi|28811773|dbj|BAC64702.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes SSI-1]
          Length = 442

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 125/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  +  DF      + +  S  +V+ QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D+      L  F   +      R        T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDMALVADHLKTFSGVK-----RRFTEKIINDTIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVRVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|84501752|ref|ZP_00999924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390373|gb|EAQ02932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           batsensis HTCC2597]
          Length = 475

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 116/376 (30%), Gaps = 36/376 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +PV     +               +  I+A+TGS GK+TT  ++   L S+ +    
Sbjct: 100 DLGVPVDNDIGLFFRSAADRGWGDYDVQPRIVAVTGSNGKSTTSALIHHVLESVGRDTQL 159

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+    +         P D    + EL        R LT    P +AV T + P HL  
Sbjct: 160 AGNIGRGVLDIDP----PGDGGVVVLELSSYQTDLARALT----PDVAVFTNLTPDHLDR 211

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HALGIKTIYSFGKSKNADF 258
             G+    +AK  +F          +  D++    L  +         +      +    
Sbjct: 212 HGGLGGYFAAKRRLFAEGGPD-RAVIGVDEAEGRYLANQLGEGPTDDRVIRISSGQK--L 268

Query: 259 QLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
               W   + + ++    +G+      +  +    G H  QN          L       
Sbjct: 269 TGPGWLVYARKGFLTEWRKGRQVGSIDLRAIPGLPGAHNHQNACAAYAACRALGLAPRVI 328

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
               S FH   G   R +    +G    +++S   N  +   A+    ++     G    
Sbjct: 329 ---ESAFHTFAGLPHRSQIVAERGGVRYVNDSKATNVDAASKALRAFDRLRWICGG---- 381

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
                     L +   ++ A + +  ++   ++ G    A    L R +       M   
Sbjct: 382 ----------LEKEGGLE-ALLPATGSVIKAYVIGREAAAFAMTL-RGVETEVCTDMATA 429

Query: 434 FLFIQSSLVDGDVVVV 449
                +    G+ V++
Sbjct: 430 VARAAAEAQPGETVLL 445


>gi|294635007|ref|ZP_06713524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
 gi|291091606|gb|EFE24167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
          Length = 438

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  +    
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAHAAGWPVGVGGNIGVP-----ALTLLKQECRLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH ++   A I  ++  H++ +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTHSLKAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYEQARA--- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    +             SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPIHGADA-----RCVSFGVD------VGDYHLNRQQGEIWLRVRGEKIL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     ++++AL+ F    G   R++  L+     
Sbjct: 258 NTSEMQLTGMHNYTNALAALALADAVGLPRASSLRALTTF---RGLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L     H  G    +LG   +  + +        E +    
Sbjct: 315 WINDSKATNVGSTEAALKGL-----HLNGTLHLLLGGDGKAADFTPLLPYLQGERI---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  G     L    P  + + ++ TM+     I   L  GD+V++
Sbjct: 366 --RLYCFGRDADPLMQLRPE-VSLRFT-TMEQAMRAITPQLRSGDMVLL 410


>gi|256545401|ref|ZP_05472764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398962|gb|EEU12576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 127/361 (35%), Gaps = 37/361 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            RL      IAITG+ GKTTT  +++  L+   K    +G+    I     L +M  + +
Sbjct: 90  YRLFKDKKNIAITGTNGKTTTTSLISHILNQSGKKAIGVGNIGEGI-----LWQMYKNDE 144

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L      T   +PHIA I  I P H+      E     K +I     ++ 
Sbjct: 145 IFVEEISSFQLHN----TKFFKPHIAGILNITPDHIDWHGSFENYIEDKLKIAINQNESD 200

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGK 279
            + +N+DD      K K  A     IY F   +       L+      +       L+  
Sbjct: 201 YLIINHDDEILMKNKNKFKA----KIYEFSIKEEVQRGIYLKDDSLYLKDEKEIYLLKRD 256

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H   N+   +  + +   D+D  IK    F   + R +  +   N    
Sbjct: 257 D----LKIVGDHNLLNVSCAILCLYLFGLDLDEIIKYTKTFKAIDHRLEFVKKIRN---V 309

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S   N  S   AI+   +         I + G   +  + +  F        +  
Sbjct: 310 SFYNDSKATNVDSAIKAINSFDK-------NVILIAGGYDKKIDYTPLF------KNTKK 356

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGF 457
            I  + L G     L++   +  I+ +    M          + D D V++  +S S G 
Sbjct: 357 KIKTMILMGQTKEILQNLCEKYKINYYLVNDMKEAVNKSFEIMKDFDTVLLSPASASWGM 416

Query: 458 Y 458
           Y
Sbjct: 417 Y 417


>gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 476

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 141/410 (34%), Gaps = 46/410 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + +G  LVV N  +  +      PV    ++   +      A L S A I+ ITGS 
Sbjct: 68  DDLIHEGVSLVVKNPGIPYTAP----PVARAIELGIEVVTEVEVAYLISPAPILGITGSN 123

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIR 176
           GKTTT   +   L +        G+    IG+PL  A    D  ++ + EL    L    
Sbjct: 124 GKTTTTTWIGNMLEAAGMRPIVAGN----IGIPLCEAAEEADEGNWLVAELSSFQLKG-- 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T   RP +A +  +A  HL     +++  S+KA++F    +T    LN+DD     L 
Sbjct: 178 --TRAFRPEVACLLNVAETHLDYHGTMDDYISSKAKLFANQRETDRAVLNWDDPVCRELV 235

Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGI 288
               A  I    +   +S+    +        +     +  +G   EV            
Sbjct: 236 PYIKAKLIPFSMTEELQSEGVYVEPAYIPDVEDGLARRIMYRGADGEVRVIIDIADIALP 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N L  +       A  +   + L  FH  E    R      +      + S   
Sbjct: 296 GRFNIENALAAVAAAIAAGAAPEALAEPLRTFHGVE---HRLEYVDEKQGVVYYNNSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +   A+  L           + + G     G    S +++L  V     +  V   G
Sbjct: 353 NSKATVMALGALQA-------PIVLIAG-----GLDRGSDYMELLPVFKE-KVKAVVAMG 399

Query: 409 FHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLV-------DGDVVVV 449
                +     L    H+   +T+D     ++++L         GD+V++
Sbjct: 400 QTKEKIARVAELAGLSHIVLVDTVDSAADTLRAALKEAASLAEPGDIVLL 449


>gi|152973099|ref|YP_001338245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957948|gb|ABR79978.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 445

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 93  VLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 149

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 150 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + EV   
Sbjct: 210 NDINLKQVMAMGCWSEQELV-----GEQGHWQAK--KLNADASQWEVLLDGEKVGEVKWA 262

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  AL  F       +R          T+ D+ +
Sbjct: 263 LVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINAR---RRLELRGEANGVTVYDD-F 318

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +  L      G  R +AVL      M  MG         L          
Sbjct: 319 AHHPTAILATLQALRG-KVGGTARILAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 370

Query: 403 HVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF
Sbjct: 371 EVFLLQPQHIPWQVAEVAEACVQ--PAHWSADVDTLAEMVVKTAHPGDHILVM-SNG-GF 426

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++  A +
Sbjct: 427 GGIHQKLLDKLAQKAAAAE 445


>gi|20809114|ref|NP_624285.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517793|gb|AAM25889.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 879

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 168/500 (33%), Gaps = 76/500 (15%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN--GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+ +  +G  + +     ++  GI+ID +  I P     A++     G D       
Sbjct: 366 TLDDVPR--KGRKVFLRESANLSTGGIAIDRTDEIHPHNIEIAVRAAKAIGLD------- 416

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGV-----------------DDVLGALNKLAVAARLR 105
             AG+ +   D+   + + +  +  +                  +V  A+  +      +
Sbjct: 417 -IAGIDITMEDIRKPLSATNGAIIEINASPGIRMHHYPSKGKPRNVAKAIVDMLFPKGSK 475

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLAR 155
           +   I++ITG+ GKTT   M+   L +   T     +   +I            P +   
Sbjct: 476 ATIPIVSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSART 535

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
              D +     L  +  G +R         + VIT I+  HL     + +E++A  KA +
Sbjct: 536 CLADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKALV 595

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHAL--------GIKTIYSFGKSKNADFQLRKWKQ 265
            E ++  G   LN DD     L  K+              T+    ++      +++   
Sbjct: 596 VEAVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEGVI 655

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +   ++ + +     G   H  +N L  +     +   ++   K +  F+P   
Sbjct: 656 VIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPDTT 715

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                    N G F ++ + Y  N   +K  I    ++  +   R I V+G   +  + S
Sbjct: 716 HNPGRFNLFNIGSFRVLVD-YGHNVEGIKKVIEAARKLDAN---RLIGVIGVPGDRMDSS 771

Query: 386 QSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDAL------PRSIHVHYSET 429
                 + EV        +++           G     L++         ++I +   ET
Sbjct: 772 I---FKVGEVCGG-GFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKET 827

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
                     S   GD++VV
Sbjct: 828 --EALKAAMHSAEAGDLIVV 845


>gi|78485922|ref|YP_391847.1| UDP-N-acetylmuramate [Thiomicrospira crunogena XCL-2]
 gi|78364208|gb|ABB42173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 131/372 (35%), Gaps = 32/372 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M+   L          IG    + GV   L   P    F + E  
Sbjct: 104 VVAVAGTHGKTTTASMVAWILEHAGLQPGFLIGGVPENFGVSARLGASP----FFVVEAD 159

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  +  I      +   +   G I   
Sbjct: 160 EYDTAFFDKRSKFVHYHPRTCVLNNLEFDHADIFDDLAAIQKQFHHLVRTVPGNGLIIQP 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVH 285
            D++  + +  +     ++T  S     +  +QL       + +  EV  +G+   EV  
Sbjct: 220 SDETNIDEVIQQGCWTPLETQGSQSTQADWAYQL----LSDDGTAYEVYYKGQLRGEVHW 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +  +         V+ AI+ L  F   EG  +R           + D+ 
Sbjct: 276 QMTGLHNVRNGVSAIAAAQHCGVPVEEAIQGLCAF---EGVRRRMTQIGTVNGIVVYDD- 331

Query: 346 YNANPASMKAAISVLSQI--SPHGEGRRIAVLGDM---CEMGELSQSFHIDLAEVLSLYN 400
           +  +P +++  +S +     +    GR IAV         MG    S      +  ++Y 
Sbjct: 332 FAHHPTAIEMTLSGMKSQLKARPTSGRLIAVFEPRSNTMRMGVHQNSLPAAFDQADAVYA 391

Query: 401 -ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCG 456
            I   W    +    KD     + V  ++T + L   +   L+  D VV+    S     
Sbjct: 392 FIDPDW----NWSMPKDLFK--VPVKVADTYNDLLDRLVDELLPEDTVVIMSNGSFGGIH 445

Query: 457 FYRLINLLLEEF 468
             RL+N L ++F
Sbjct: 446 Q-RLLNALQQKF 456


>gi|330003489|ref|ZP_08304644.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328536942|gb|EGF63238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 457

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + EV   
Sbjct: 222 NDINLKQVMAMGCWSEQELV-----GEQGHWQAK--KLNADASQWEVLLDGEKVGEVKWA 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINAR---RRLELRGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +  L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLQALRG-KVGGTARILAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 382

Query: 403 HVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF
Sbjct: 383 EVFLLQPQHIPWQVAEVAEACVQ--PAHWSADVDTLAEMVVKTAHPGDHILVM-SNG-GF 438

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++  A +
Sbjct: 439 GGIHQKLLDKLAQKAAAAE 457


>gi|37528368|ref|NP_931713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787806|emb|CAE16921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 456

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 129/369 (34%), Gaps = 34/369 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +      +   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYKPGFLIGGVPGNFETSAQIGESP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  I      +   +  +G I + 
Sbjct: 161 EYDSAFFDKRSKFVHYSPRTLIMNNLEFDHGDIFGDLAAIQRQFHHLVRIVPGSGKICVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D   + + +      ++ +      +  ++Q +K    ++    +V   GK + EV  
Sbjct: 221 DNDVNLKQVLSMGCWSELELV-----GETGNWQAKKI--STDSRHYQVFYGGKVVGEVNG 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N L+ +     +      A  ALS F       +R      +   T+ D+ 
Sbjct: 274 SLVGEHNMRNGLIAIAAAHHVGVQPADACCALSEFINAR---RRLELRGEENGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R I VL    E    +    +   E+         V
Sbjct: 330 FAHHPTAILATLEALRS-KVGGTARIITVL----EPRSNTMKMGVSKNEIAPALGRADEV 384

Query: 405 WLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L        HV  + D   +    ++S  +D L   I      GD ++V  SN  GF  
Sbjct: 385 FLFQPANIKWHVSEIADHCVQ--PAYWSADIDSLVHMIVDKAQQGDHILVM-SNG-GFGD 440

Query: 460 LINLLLEEF 468
           +   LL + 
Sbjct: 441 IHEKLLSKL 449


>gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
 gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
          Length = 506

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 105/307 (34%), Gaps = 39/307 (12%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D ++   EL    L E    T    P  A +  I P H+     +E  A+AK +IF  L 
Sbjct: 168 DDEWFCAELSSFQLAE----TSNFHPVAAALLNITPDHIEWHGSMEAYAAAKEQIFAQLT 223

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 ++ DD++   +  +  A G+  +     S  AD Q  +     E + M ++L  
Sbjct: 224 ADNLAIISRDDAYCRAIYERLCARGVPVLC---VSTGADPQ-TQQAAYVENNIMHIRLHN 279

Query: 279 KSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           ++  +         G H  QNML    +     ADV      L  F   E    R     
Sbjct: 280 RTYTLCDVRNTKLQGEHNIQNMLTASALALFAGADVQAITDVLLQFSTLE---HRLEFVA 336

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G    +++S   N  + + A+ V      +  G+ + +LG   +  +L+   H D+  
Sbjct: 337 RIGDVDFVNDSKATNTDAAQHALRV------YDAGKIVVLLGGHDKQTDLAALAH-DVVR 389

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVH------------YSETMDGLFLFIQSSLV 442
             S+         G     +  AL   +               Y   +   F        
Sbjct: 390 KCSVA-----VCYGQAGSRIAQALTYELSCANAEHPNTTCTIVYEPHLREAFDAAVLHAK 444

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 445 PGDCVLL 451


>gi|220935613|ref|YP_002514512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996923|gb|ACL73525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 133/369 (36%), Gaps = 38/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L   P    F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLAWILEYAGLRPGFLIGGVPENFGVSARLGEAP----FFVVEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP   V+  +   H   F  +  I      +   +   G I  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPRTLVLNNLEYDHADIFPDLAAIERQFHHLVRTVPGEGLIVRN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     + ++        +  F  + + D+Q R   Q  + S  +V  +G+S  EV  
Sbjct: 222 ADDENLSRVLSQG---CWTPVQGFSVAGHGDWQGR--PQSPDASRFQVLYRGESQGEVCW 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H   N L  L         V   I AL+ F   +   +R +    +    + D+ 
Sbjct: 277 EMIGRHNMANALAALAAARHAGVPVPQGIHALAKFQSVK---RRLQLRGERSGIQVYDD- 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHV 404
           +  +P ++   +  L   +  G  R IAVL        +    H D   +  SL     V
Sbjct: 333 FAHHPTAIATTLEALR--ARVGAARIIAVLD--PRSNTMRMGVHRD--RLAGSLAAADRV 386

Query: 405 WL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
           +L      G+    + DALP   H       D L   + + +  GD V++  SN  GF  
Sbjct: 387 FLHAPADLGWDSQVVIDALP---HGLACADTDALLAALLAEVRPGDHVLIM-SNG-GFGG 441

Query: 458 --YRLINLL 464
              RL+  L
Sbjct: 442 LHDRLLAAL 450


>gi|33862300|ref|NP_893860.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9313]
 gi|44888177|sp|Q7V9C3|MURC_PROMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33640413|emb|CAE20202.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 488

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 148/390 (37%), Gaps = 46/390 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVP 150
           L  L++  + A L      IA+ GS GKTTT  +LT  L++  +   A IG    +    
Sbjct: 106 LKILHRSDLLAALIQAQPSIAVAGSHGKTTTSTLLTTLLATTDQDPTAVIGGVVPYYDSN 165

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             + +        + E   S    ++F     +  + VIT +   H  +++ ++E+ +  
Sbjct: 166 GHVGKG----RLLVAEADESDGSLVKF-----QATLGVITNLELDHTDHYANLDELINTM 216

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
               +G  +   +  N+D    +     +    +KT      S   DF         +Q+
Sbjct: 217 KRFGQGCRR---LLANFDCPILKEHFDATAWWSVKT------SAGVDFAALPICLNGDQT 267

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             ++  QGK M ++     G H   N +  +    +     +   + L+        G+R
Sbjct: 268 IADIYEQGKRMGQITLPMPGLHNLSNAMAAIAACRLEGLSFEDVQQGLADLQ---PPGRR 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVL-------SQISPHGEGRRIAVLGDMCEMG 382
           +          ++D+ Y  +P+ + A +++            P+   R +AV        
Sbjct: 325 FDFRGTWEGRQIVDD-YAHHPSEVSATLTMARLIVTSGRSQLPNPPKRILAVF--QPHRY 381

Query: 383 ELSQSFHIDLAEVLSLYNISH---VWLSGFHVL--ALKDALPRSIHVHY-------SETM 430
             +  F  D A  L   +      V+ +G + +  A  ++L ++I + +       +E  
Sbjct: 382 SRTNKFLYDFARALGEADAVLLAPVYSAGENPIQGATSESLAKAIRIQHPNLPVAVAENF 441

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC-GFYR 459
           + L L +Q   + GD+V+   + +    +R
Sbjct: 442 NQLTLLVQKHSLKGDLVLAMGAGNINNLWR 471


>gi|317182699|dbj|BAJ60483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F57]
          Length = 447

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKQIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + E+ S Y    V  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|206579371|ref|YP_002240813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288937467|ref|YP_003441526.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|290512207|ref|ZP_06551574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
 gi|206568429|gb|ACI10205.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288892176|gb|ADC60494.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|289775202|gb|EFD83203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
          Length = 457

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + EV   
Sbjct: 222 NDINLKQVMAMGCWSEQELV-----GEQGHWQAK--KLNADASQWEVLLDGEKVGEVKWA 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINAR---RRLELRGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +  L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLQALRG-KVGGTARILAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 382

Query: 403 HVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF
Sbjct: 383 EVFLLQPQHIPWQVAEVAEACVQ--PAHWSADVDTLAEMVVKTAHPGDHILVM-SNG-GF 438

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++  A +
Sbjct: 439 GGIHQKLLDKLAQKAAAAE 457


>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
 gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
          Length = 463

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 123/371 (33%), Gaps = 42/371 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V DV     ++A A R    A +IAITG+ GK+TT  ++   L    +     G+  
Sbjct: 94  VPIVGDVELFFRQMAKAGRP---APVIAITGTNGKSTTTALIAHVLKQAGRDVQMGGNIG 150

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +     L+  P +    + E+    +     L   + PH+ ++  + P HL     +E
Sbjct: 151 RAVLDLDPLSETPAN-QVYVVEISSYQID----LAPSIAPHVGLLLNLTPDHLERHGTLE 205

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
             A  K  +      +    +  DD     +  +  A     + +  K   AD      K
Sbjct: 206 NYAGIKERLVA---ASDLAVVGLDDEHCRAISGRISASRT-PLVTISKDGAADVFFADGK 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +   +        +  V    G H  QN          +    +      S F+   
Sbjct: 262 LIVDGDMVI------DLSGVGSLRGQHNGQNAAAAFAACRAVGLSSEEI---QSGFNSFP 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R   A + G    +++S   N  ++  A+S   ++     G     L     +G L
Sbjct: 313 GLAHRMEQAGHVGDVLFVNDSKATNAEAVAPALSSFPKVHWIAGG-----LAKDGGIGSL 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ--SSLV 442
           +  F            I+  +  G    +    LP +I    + ++          +SL 
Sbjct: 368 APQFDR----------IAKAYFIGEAAGSFASQLPDTIPYEIAGSLKQAVNHAARDASLA 417

Query: 443 DG----DVVVV 449
            G     VV++
Sbjct: 418 AGKGAEAVVLL 428


>gi|253689955|ref|YP_003019145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756533|gb|ACT14609.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 438

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +       
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-----ALQLLEQPAQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH---ADL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++            SFG     D+ L + +    ++W+ V  +     
Sbjct: 209 CVVNADDALTMPVRGADA-----RCRSFGVDVG-DYHLNRQQ---GETWLRVDGERVLNT 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +   +     +A+ AL+ F    G   R++ A        I
Sbjct: 260 REIKLVGQHNYTNALAALALADAVKIPRASALTALTTF---AGLPHRFQMAFEHNGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L+      EG    +LG   +  + S      L   L   +I 
Sbjct: 317 NDSKATNVGSTEAALSGLT-----VEGTLHLLLGGDGKSADFSP-----LVPYLQGEHI- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I   +  GD+V++
Sbjct: 366 RLYCFGRDGQQLAALRPE--IAEQTETMEQAMRVIAERVKPGDMVLL 410


>gi|187930094|ref|YP_001900581.1| UDP-N-acetylmuramate [Ralstonia pickettii 12J]
 gi|187726984|gb|ACD28149.1| UDP-N-acetylmuramate [Ralstonia pickettii 12J]
          Length = 461

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 134/380 (35%), Gaps = 40/380 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+    + DF + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWILQDAG---YNPGFLVGGVPRNFGLSARLTESDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + +  +        +  FG   N  +++      ++    +V  QG++   V
Sbjct: 219 VNGREDSLKRVLERG---CWSEVEQFGAEGNLGWEVENL---ADDDSFDVVFQGQTQGRV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 RWALQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVNDVTVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNIS 402
           + +  +P +++  I  L      G+GR +AVL    E    +    +  LA   SL    
Sbjct: 330 D-FAHHPTAIRTTIEGLR--RRVGKGRILAVL----EPRSNTMKLGVMKLALPDSLSGAE 382

Query: 403 HVWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            ++  G      +DAL         P          +  L   + ++   GD V+V  SN
Sbjct: 383 QIFAYG--AANGRDALGWDLAGALAPLGERAKTFSDLSALIEAVTAAARPGDHVLVM-SN 439

Query: 454 SCGFY----RLINLLLEEFP 469
             GF     +L++ L E   
Sbjct: 440 G-GFGGVHQKLLDALAERAE 458


>gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
 gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
          Length = 430

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 119/385 (30%), Gaps = 56/385 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN---------- 144
           L +      +     II ITG+ GKTTT   +   L ++       G+            
Sbjct: 46  LAECKRLLDIDESIKIIGITGTNGKTTTAAAICATLLNLGYGCGLCGTRGAFVNNERIDD 105

Query: 145 -----NHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                + I   L+  +   +   ++ + E+    + + R     +   + + T +   HL
Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEVSSHAIAQKRI--ESLDFAMKIFTNLTQDHL 163

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 EE A  K+E F          +N DD                   ++    NAD
Sbjct: 164 DYHGTFEEYARVKSEFFA---DDAPKLINIDDRGG-------IKFNPANALTYALHANAD 213

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-GIVSILTADVDTAIKA 316
           F   ++          ++   + M +  +  G     N++     + ++    ++   +A
Sbjct: 214 FAPGEYSLEG-GIRATLKTPRRQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIARA 272

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            + F   EGR +            L+   +   P  ++  ++ L         + +AV G
Sbjct: 273 AAKFDGVEGRMEVV------SREPLVIVDFAHTPDGIEKVLNALRH------RKIVAVFG 320

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSE 428
                G+  ++    +  +   Y    V  S           +  +   L  +  V    
Sbjct: 321 A---GGDRDRTKRPKMGAIAQKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIA 377

Query: 429 TMDGLFLFIQSSLVDGD--VVVVKS 451
                  +   SL   +  V++ K 
Sbjct: 378 NRKEAIKYALESLTQDEILVILGKG 402


>gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter
           hongkongensis HLHK9]
          Length = 856

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 139/421 (33%), Gaps = 57/421 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV  A+     A     +  ++A++G+ GKTTT  +    ++   K      +   ++ 
Sbjct: 452 RDVGAAIIGNMFAGDDNGRIPVVAVSGTNGKTTTVRLSAHLIAQTGKRMGMTVTDGVYVN 511

Query: 149 VPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-A 195
                +             M  DVD  +FE   +  G +R      R  +AV+T +    
Sbjct: 512 GRQIDSGDCSGPRSARNVLMHPDVDAAVFE--TARGGMLREGLGFDRCDVAVVTNVGEGD 569

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-------GIKT 246
           HL       ++E+A  K+ + + +  +G   LN  D     + A            G   
Sbjct: 570 HLGLNYIYTLDELAVLKSIVVQNVSPSGMAVLNAADPMVARMAASCPGSVTFFAHDGHHP 629

Query: 247 IYSFGKSKNADF-QLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  +++      +   +  C+E   + +      + +   G      +N +  +G   
Sbjct: 630 VINAHRAQGRRVIYVEDGQIVCAEGGDVRMTFDLAQVPLTAGGRIAFQIENSMGAVGAAW 689

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +     L+ F              +    TLI + Y  NP +M+A +  +  + 
Sbjct: 690 ALGIAQEQIAAGLASFVSDAATAPGRFNLFDYRGATLIAD-YGHNPDAMQALVQAVETLP 748

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                RRI V+      G+           +L       V L           G  V  L
Sbjct: 749 GQ---RRIVVISG---AGDRRDEDIRRQTRILGTA-FDEVVLYQDACQRGRADGEVVALL 801

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           ++ L  +      + + G         + L  GD+ ++          L++ + E    I
Sbjct: 802 REGLEGAPRTRQIDEIQGEFLAIDTALARLTPGDLCLI----------LVDQVEEALAHI 851

Query: 472 Q 472
           Q
Sbjct: 852 Q 852


>gi|74314710|ref|YP_313129.1| putative ligase [Shigella sonnei Ss046]
 gi|73858187|gb|AAZ90894.1| putative ligase [Shigella sonnei Ss046]
 gi|323166720|gb|EFZ52478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 457

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVASADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|325280024|ref|YP_004252566.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
 gi|324311833|gb|ADY32386.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
          Length = 457

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 122/384 (31%), Gaps = 42/384 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +  K   I + G+ GKTT   +    L +   T  C            T   +
Sbjct: 104 RAEVLGMISRKGKAICVAGTHGKTTVSTLTAFLLKNS--TVGCNAFLGGIAANFGTNLLL 161

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +  + + E        +      + P IAVIT +   HL  +     +  A       
Sbjct: 162 DRNSSYIVIEADEFDRSFLH-----LSPEIAVITAMDEDHLDIYENKANLLEAFEAFAGQ 216

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G             LK        +    +G    AD      +    +   +   
Sbjct: 217 VNPQGGRLF---------LKKGLQLKQTQVTGYYGVEVKADCYADGLRIEQGRYVFDYHG 267

Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G  +E +  GI G    +N    + +        +   +AL  F   +G  +R+   + 
Sbjct: 268 RGVDIEGLILGIPGRLNVENATAAITLALEAGVQPEEIRRALPDF---KGVARRFNIQVY 324

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
                 ID+ Y  +P  ++A +  + ++ P    R + V+     +   ++ F  D A  
Sbjct: 325 TEKTIYIDD-YAHHPREIEATLRSVREMWPD---RPVTVVFQ-PHLYTRTRDFQEDFARS 379

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                   +L +Y      + G     ++  L    ++    T + L   I      G  
Sbjct: 380 LSLADRVVLLEIYPARERPIPGITAEVIRKRLTVPGNIV---TKEELLQHIIPDFQGG-- 434

Query: 447 VVV-KSSNSCGFYRLINLLLEEFP 469
           ++V   +      RL+  + E+  
Sbjct: 435 ILVTMGAGDI--DRLVGEIGEKVK 456


>gi|306818519|ref|ZP_07452242.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
 gi|304648692|gb|EFM45994.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
          Length = 490

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 124/385 (32%), Gaps = 36/385 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   ++            ++A+ G+ GKTTT  ML+ AL  +    +   +    I    
Sbjct: 104 LEIWHRSQALDFCTRSKDLLAVAGAHGKTTTSAMLSKALWDVGADPS--FAIGGVILEYG 161

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T AR+    +F + E   S    + +      P + V+T I P HL ++   E    A  
Sbjct: 162 TGARLGRGREF-VIEADESDGSFLNYA-----PLVEVLTNIEPDHLDHWGSREAFDQAFV 215

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQS 270
           +    +   G I    DD+    L  + H+      Y FG     A   +   +      
Sbjct: 216 DFTARIRPGGAIVACGDDAGIRRLAPRFHSGAALVSYGFGAPLPGAALVVALGEPRLGAG 275

Query: 271 WMEVQLQGKSMEVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKA--LSV 319
             EV L+                    G H   +    LG  + L   V           
Sbjct: 276 HAEVDLRVMRCHPEQLLFHDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAFCQS 335

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G G+R +     G   + D+ Y  +P  + A +     ++ +  GR +       
Sbjct: 336 LSSFTGTGRRMQFLGEIGGVRIYDD-YGHHPTEVAATLGAARDLAGN--GRLLVCF--QP 390

Query: 380 EMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            +   +++F  + A VLS          Y        G    A+ D +       +   M
Sbjct: 391 HLYSRTKTFASEFATVLSAADEVVVCGVYAARENPTDGADGDAIADLM--GEKGQFISDM 448

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
                 + +    GD+++   + S 
Sbjct: 449 YAAGDAVYNLAKPGDLLLFLGAGSI 473


>gi|291525273|emb|CBK90860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale DSM 17629]
          Length = 453

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 120/342 (35%), Gaps = 30/342 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITG+ GKTTT  +    + +  K    +G+        +T +         + E+  
Sbjct: 111 IIAITGTNGKTTTTALTGEIMKNYFKDVRVVGNIGIPYTSMVTGST---GETVTVAEISS 167

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I       +PH++ I  I P HL+    +E    AK +I +         LNY+D
Sbjct: 168 FQLETIDTF----KPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYCVLNYED 223

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A+  A  I        S+             +    EV    +      + +G
Sbjct: 224 EVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVRDEVIDVNE-----LNLLG 278

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N++    +       +D  ++ L VF   E    R      +      ++S   N
Sbjct: 279 KHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVE---HRIEYVTEKRGVRFYNDSKGTN 335

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P    AAI  +  ++     R   ++G     G   QS + +  E      +  + L G 
Sbjct: 336 PD---AAIQGIRAMN-----RPTLLIGG----GYDKQSEYDEWIEAFDG-KVKELVLIGQ 382

Query: 410 HVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +++   R   ++    +T +    +     V GD V++
Sbjct: 383 TADKIEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 424


>gi|220929148|ref|YP_002506057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulolyticum H10]
 gi|254766044|sp|B8I2T4|MURD_CLOCE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219999476|gb|ACL76077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulolyticum H10]
          Length = 465

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 129/352 (36%), Gaps = 39/352 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A + A+TGS GKTTT  ++   LS         G+    +   +       + D  I E
Sbjct: 116 PAQVFAVTGSDGKTTTTTLIYKTLSEEGFKCWLGGNIGTPLLSKID---DVAETDKVILE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I+       P +AVIT I+P HL     ++E   AK  IF    +   + LN
Sbjct: 173 LSSFQLMTIKD-----CPSVAVITNISPNHLDVHKSLQEYIDAKKNIFINQNENDKLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +D+   +    ++    +        ++   +Q  +     E S  E+ ++G  ++    
Sbjct: 228 FDNEITKSFNYEARGEYVYFSRLNNINEGVVYQNGRIIVKKENSITEI-IEGDKIK---- 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N +      +I     +T  +  S F+  E    R             + S 
Sbjct: 283 IPGVHNIENYMAATA-ATIDYVKPETIARIASSFNGVE---HRIELVRELNGVKFYNSSI 338

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +++P+   AA+            + I + G     G+     +  + E+++   +  + L
Sbjct: 339 DSSPSRTIAALKTFKD-------KVILIAG-----GKDKGIPYDSMGEIITE-KVKCLLL 385

Query: 407 SGFHVLALKDA---------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +++A         L   I + + +T   +     +    GD +++
Sbjct: 386 IGATASRIEEAYKNYLQQRDLENDIKIIHCDTYQEVVQKAHAEAEQGDCIIL 437


>gi|317181177|dbj|BAJ58963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F32]
          Length = 447

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 136/395 (34%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYGDLEEAMRLGCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE    AK   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHKSIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLNPSISASLCYQQDLRDPNLKEIAL------IHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++  +  L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLEAIVPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    +  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAMASCYAHQIILTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|312143939|ref|YP_003995385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904590|gb|ADQ15031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 454

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 140/357 (39%), Gaps = 30/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL 153
           ++++  A R+  +A IIA+TG+ GKTTT ++L   L+ +  +     G+        +++
Sbjct: 97  ISEIEFAYRMN-EADIIAVTGTNGKTTTTDLLAKMLNKLNGRKVQAAGNIGIPF---ISI 152

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L           P IA+    +P HL      E   +AK +I
Sbjct: 153 VEQMGKDDLVVLELSSFQL----EAVKNFHPKIALYLNYSPDHLDRHKSEENYKNAKKKI 208

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F    ++    ++ DD +   +K +  A  + TI +F  +K AD  +   K   +++  +
Sbjct: 209 FSQQNRSDYALIDLDDKYLAEIKNQIKAE-LFTISAF--NKKADVIIENNKAILQKNGED 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + +    +   +    H  +N+        +    ++    A   +  K     R    
Sbjct: 266 KKQELIDFDK-LNFSALHNKKNITFAALAAYLSGQKLEKIKHAAQKYELKS---HRMEKI 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N   + +ID+S   NP+   AA++ +  +        I + G      + S      LA
Sbjct: 322 DNDRGYLIIDDSKATNPS---AALNAVKSLDRDI----ILIAGGQDRGADFS-----QLA 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E +    +S + L G     L  A+  S + +  +E M+         L + + +++
Sbjct: 370 EEIKKR-VSTLILIGETSDKLAAAVGESNLEIFKAENMEKAAEIAAEKLSENNCLLL 425


>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
 gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 119/350 (34%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  +TGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PANIFGVTGSDGKTTTTTLVYEMLKKEGYKTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+  E    + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVEAKKNIFKYQENNDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  I  F         + K    +  S  ++ + GK +     
Sbjct: 228 KDDELTNRMEKEA----LGNILKFSL-------VEKVYDGACLSNNKLTILGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  ++P+   A ++   +         I + G   +           LAE      I  +
Sbjct: 333 SIASSPSRTLAGLNAFEK-------PVILIAGGYDKKIPFEP-----LAEE-GYDKIKTL 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     +K A  +        I +    +M+            GD++
Sbjct: 380 ILMGDTKSKIKSAFEKVILDKKCKIEIVMVNSMEEAVKVADDISEKGDII 429


>gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
 gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
          Length = 441

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 134/361 (37%), Gaps = 48/361 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            L +A  L  K  IIAITG+ GKTTT  ++     +       +G+    IG+   +   
Sbjct: 94  DLELAYTLFPKRKIIAITGTNGKTTTTTLVGEIFKTTNIKSKVVGNIG--IGMLWEIFNS 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +    I E+    L  I       +P+IA I  I P H+      +     K +IF+ 
Sbjct: 152 DDETVN-IIEVSSFQLHNIENF----KPYIASIGNITPDHIDWHGSFDNYIEDKLKIFKN 206

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           ++K G + LN DD     +  ++  +   ++     +KNADF L         S      
Sbjct: 207 MDKNGNLILNIDDEILGKINVENTNVTKISL----NNKNADFYL---------SENNFYH 253

Query: 277 QGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             K +  +     +G H AQN+L++L I       +DT I A   F   E    R     
Sbjct: 254 NDKKLFSMKDLKILGKHNAQNVLISLAICYNYGIIMDTIIFACKNFGGVE---HRIEFVR 310

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  S   AI  L +         I ++G   +  + +  F     +
Sbjct: 311 ELNGIKFYNDSKGTNVDSTIKAIEALEK-------PIILIVGGYDKNVDFNPLFESFNGK 363

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
                 +  + L G       D+  ++   +      Y E ++  F   +S    GD V+
Sbjct: 364 ------VKTLILVGDTKYKFYDSAKKNGFENNIIVNDYREVVEKCFEIAES----GDNVL 413

Query: 449 V 449
           +
Sbjct: 414 L 414


>gi|312114846|ref|YP_004012442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219975|gb|ADP71343.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 470

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 24/274 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R+ +   +IAITG+ GK+TT  +    L++  +   C G+    +          VD   
Sbjct: 109 RVGANCPVIAITGTNGKSTTTALSNHLLNAAGRASVCGGNIGRAVLD----LPPFVDGQH 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     LT  + P   ++  I P H+     +E  A+ K ++F  +   GT
Sbjct: 165 YVLELSSFQLD----LTPSLDPDAGILLNITPDHIDRHGSLEGYAAVKEKLFANMTGGGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD+  + + A++ A G++T+        A           E S +  +L   +++
Sbjct: 221 AVIGADDALCDAIAARAEARGVRTLRISSTKPVAT------GIYGEGSGL-FELADGALQ 273

Query: 283 VV--HHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 GI    G H AQN    L     L     T ++         G   R +     
Sbjct: 274 NRASLSGIGSLRGAHNAQNAAAALAATRSLGLPWATLVEG---LQSFPGLAHRMQEIRRI 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           G    +++S   N  + + A+   + I     G+
Sbjct: 331 GHVLFVNDSKATNADAAERALLSFTNIYWIAGGK 364


>gi|328675678|gb|AEB28353.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella cf. novicida
           3523]
          Length = 456

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 131/375 (34%), Gaps = 38/375 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  +   S+E+ 
Sbjct: 222 NDKDENVQKIISMGCWSELVRV-------NSDTGISITKHTLDYSKFELCNINSNSIEIS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +QG  TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEVIKDALESFKGVK---RRLEVLSHQGNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P S+K  +  +   +       IA++      M + G+   +  + + E      
Sbjct: 332 -FAHHPTSIKLTLEAVRNKAKEAY--VIALIDPRSNTMRQ-GDNKDNLPMSIIE------ 381

Query: 401 ISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDV-V-VVKSSNSC 455
              V L    +L    K+ L  S +V +   +D     I   L    D  + +V  SN  
Sbjct: 382 ADRVLLYNHSLLKWDAKEVLKNSSNVDFIANIDDFVDCIDELLTKYQDRNIQLVMMSNGS 441

Query: 456 --GF-YRLINLLLEE 467
             G   +L+ LL  +
Sbjct: 442 FDGLREKLVKLLETK 456


>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
 gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
          Length = 466

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 122/354 (34%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    IG  L L       
Sbjct: 117 FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGN----IGSSLALQVATEKH 172

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 173 DYYIIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYDHCMQNYVDAKFRITQNQTP 228

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQ 277
                   DD   +   AK H L    +Y F     A  +        E   +E+   + 
Sbjct: 229 DDAFIYWNDDPIIKRELAK-HGLKA-HLYPF-----AAVKKDGVIAYVEDGEVEINEPIA 281

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               +      G H   N L      ++     +   KALS F   E    R        
Sbjct: 282 FNMEQEELALRGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVE---HRLEKVATVR 338

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++ 
Sbjct: 339 GVQFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVR 386

Query: 398 LYNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
                 V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 387 KNCSGLVYL-GLHNEKLHEFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLL 439


>gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK405]
 gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK678]
 gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1]
 gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK408]
          Length = 481

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 171/484 (35%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQTLSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANNRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N D   F+++K +  ++           ++  +         +      ++ GK +   
Sbjct: 241 VNSDMDHFQIVKEQVASM-----------EHDFYGAGSSNTIIDSQAFSFEVAGKLAGRY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG+   +N     L  L +     A ++   K ++        G+        G  
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRL----GASLEDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|302388641|ref|YP_003824462.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302199269|gb|ADL06839.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 875

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 133/387 (34%), Gaps = 55/387 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA------------CIGSYNNHIGVPL 151
              +  ++A+TG+ GKTTT  M+   LS+                  CI   +       
Sbjct: 474 EPPRFPLVAVTGTNGKTTTVRMVANILSAHGLKVGMTCTDGVYVGSMCIRRGDCSGPESA 533

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASA 209
            +  +   V+  + E+     G IR         + +IT I   HL     + +E++   
Sbjct: 534 KMVLLDPSVEAAVLEIA--RGGLIRGGLAYEYADVGIITNITGDHLGQDGVNTLEDLMFV 591

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+ + E ++  G   LN DD     +K +  +     +  F   ++     +   +    
Sbjct: 592 KSLVAEQVKPEGYAVLNADDITSVEVKKRVKS----RVIFFSLQEDNLVLRKHIAEGGRG 647

Query: 270 SW----MEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            +         +G           +    +G   H  QN L        L    +T  +A
Sbjct: 648 VYVKDGFIFFQEGDKSVSLMKVADIPAAMNGRARHNVQNALAAAAAGWALDVPAETIRRA 707

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           LS F   E         +++G   +I + Y  NPA+++A I     ++P    R + V+ 
Sbjct: 708 LSDFRCDESTNPGRLNIISEGNIRIILD-YGHNPAALEAIIGTARSMNP---ARMVGVIA 763

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGF-HVLALKDALPRSIHVH 425
                G+      + L +V        + +           G    L L+ AL   +   
Sbjct: 764 SP---GDRRDEAIVKLGQVAG-RGFQRLIIKEDEDPRGRKPGEVASLLLEGALSAGLKKD 819

Query: 426 YSETM---DGLFLFIQSSLVDGDVVVV 449
             + +   +    F   +  DGD++V+
Sbjct: 820 QIDVILKEEEAITFALENAQDGDLIVI 846


>gi|269103565|ref|ZP_06156262.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163463|gb|EEZ41959.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 451

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 142/409 (34%), Gaps = 32/409 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQEFLLHDRWVMAVSGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YNPGFLVGGVLGNFGVSARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I              ++  +G  +
Sbjct: 181 LIMNNLEFDHADIFDDLKSIQRQFHHLVRTVPGNGRILA----PHGVAAIDETLEMGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSI 305
              +    +  +Q    K  ++ S   V L G+ + VV    +G H   N LM +     
Sbjct: 237 ELEY-IGGDGHWQAE--KLMADGSQFSVLLDGEKVGVVNWPLVGDHNVNNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D A +AL  F   +   +R           + D+ +  +P +++  +  L     
Sbjct: 294 VGVTPDLACEALGNFINTK---RRLELKGEVNGVKVYDD-FAHHPTAIELTLGGLRA-KV 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVL-SLYNISHVWLSGFH--VLALKDALPR 420
             + R +AVL    E    +     H D  ++  SL     V+L   +    ++ D   +
Sbjct: 349 GADARILAVL----EPRSNTMKLGVHKD--DLAPSLQAADEVFLFQPNNIPWSVSDIANQ 402

Query: 421 SIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                ++ + +DGL   I +   +GD ++V  SN  GF  + + LL + 
Sbjct: 403 CSQPAFTNDDLDGLVAEICAHAKEGDTILVM-SNG-GFGGIHDKLLAKL 449


>gi|322807843|emb|CBZ05418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum H04402 065]
          Length = 458

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNEMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H   N+L    +V+     +D+       F   E R +  R           ++
Sbjct: 277 INLKGRHNIANLLAAFCMVNKY-VSIDSMKYVAINFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  + I     E       +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISHKKCEMEIVTVNSMEEAVKVADNMAEKGDII 429


>gi|300906078|ref|ZP_07123798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|301302661|ref|ZP_07208791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|300402086|gb|EFJ85624.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|300842186|gb|EFK69946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|315255588|gb|EFU35556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 85-1]
          Length = 445

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 131/378 (34%), Gaps = 42/378 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  M T  L          G     +     ++    + DF + E    
Sbjct: 94  LAVAGTHGKTTTAGMATWILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEY 150

Query: 171 HLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                   +  V   P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D   +   A       + +      +   +Q +  K  ++ S  EV L G+ + EV    
Sbjct: 211 DINLKQTMAMGCWSEQELV-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  AL  F       +R          T+ D+ + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISH 403
            +P ++ A ++ L      G  R IAVL      M  MG         L           
Sbjct: 320 HHPTAILATLAALRG-KVGGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADE 371

Query: 404 VWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 372 VFLLQPAHIPWQVAEVAEACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFG 427

Query: 459 ----RLINLLLEEFPAIQ 472
               +L++ L ++  A Q
Sbjct: 428 GIHQKLLDGLAKKAEAAQ 445


>gi|302344981|ref|YP_003813334.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
 gi|302150216|gb|ADK96478.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
          Length = 458

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 148/408 (36%), Gaps = 39/408 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A ++ A  +V+ T  + S  +    V+  ++      +  V   L      +   G+
Sbjct: 63  IPAACKEPASTLVIYTPAIPSNHAEL--VYFRENGFEIQKRAQVLGTLTRTHKGLCFAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M    +        A +G  + + G    L+      DF + E       E 
Sbjct: 121 HGKTTTSCMCAHLMHQSHLDCNAFLGGISKNYGTNYILS---DHSDFVVIEA-----DEF 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               H +RP ++VIT+  P HL  +   E    +     E ++K G + +       + L
Sbjct: 173 DRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALII------RKGL 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294
           + K +      IY + + +  DF     +  +     +     ++++ +  G       +
Sbjct: 227 EMKPNVQEGVRIYEYSRDEG-DFHAENIRIANGTITFDFVSPIENIKDIELGQPIPINIE 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +     +     +  +   +   +R+   +       + + Y  +P  + 
Sbjct: 286 NGISAMAMAQLNGCTAEELRNGMKTYGGVD---RRFDFKIKDNRHVFLSD-YAHHPKEIL 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVW 405
            +   L ++  + + +  A+      +   ++ F+ + AE LS         +Y      
Sbjct: 342 QSAKSLKEL--YADKKVTAIF--QPHLYTRTRDFYKEFAEALSHFDEVVLTEIYPAREEP 397

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + G     + D L  ++     +  D +  F++S   + DV+VV  + 
Sbjct: 398 IPGVTSELIYDNLSPNVKKQMIK-KDDVLDFVKS--RNFDVLVVLGAG 442


>gi|188528265|ref|YP_001910952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
 gi|188144505|gb|ACD48922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
          Length = 447

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKQIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNSLFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEIVHSK------PLVIVDFAHTTDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    +  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|291327122|ref|ZP_06127070.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
 gi|291311637|gb|EFE52090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
          Length = 448

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 122/353 (34%), Gaps = 28/353 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    +  V   +   P    F + E  
Sbjct: 93  VLAVAGTHGKTTTAGMLAWILEDCGYKPGFLIGGVPGNFDVSAKIGESP----FFVIEAD 148

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  +E I      +   +  +G IF  
Sbjct: 149 EYDCAFFDKRSKFVHYSPKTLVLNNLEFDHADIFENLEAIQKQFHHLVRIVPASGKIFTP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + +         + +      ++  +Q    K   + S   V  Q + + EV  
Sbjct: 209 DNDNHLKQVIGMGCWSEQELV----GGEHGGWQAE--KLSHDGSHFAVYYQQEKVGEVTW 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  QN LM +     +   V  A  AL  F       +R      +   ++ D+ 
Sbjct: 263 SQVGNHNIQNALMAIAAAHHVGVPVKEACLALDSFINAR---RRLELRGVENGVSVYDD- 318

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R +AVL    E    +    I+  ++         V
Sbjct: 319 FAHHPTAILATLEALRS-KVGGTSRILAVL----EPRSNTMKMGINKNDIAPALGRADEV 373

Query: 405 WLSGFHVLA--LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +L     +   + D   + +    +S  ++     I  +   GD ++V  SN 
Sbjct: 374 FLFQPANIPWMVTDIAEKCVQPARWSADIEAFTNMIIETAQPGDHILVM-SNG 425


>gi|73542271|ref|YP_296791.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119684|gb|AAZ61947.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 856

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 140/393 (35%), Gaps = 46/393 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A++G+ GKTTT  ++T  +++        G+   +I     
Sbjct: 455 EAIVSTMFADGDDGRIPVVAVSGTNGKTTTVRLITHIMATSGLRMGMTGTDGVYIRGERI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +  DVD  +FE   +  G +R      R  +AV+T +    HL  
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFE--TARGGLLREGLAFDRCDVAVVTNVGEGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              S +E++A  K+ I + +   G   LN  D     +      L     +  G+   A 
Sbjct: 573 SFISTVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGLVTFFAHDPGQPAMAT 632

Query: 258 FQLRKWKQCS-EQSWM-------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            + +  +    +   +       E+++    + +  +G      +N + ++G    L  D
Sbjct: 633 HRAQGKRVVFVDGDHIVASEGDNEMRIPLAEIPLTRNGTIGFQVENAMSSIGAAWALGID 692

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + L+ F              +    TLI + Y  NP +++A  + +  +    + 
Sbjct: 693 WNVIRRGLATFVNDAQTAPGRFNVFDYRGATLIAD-YGHNPDAIQALCNAVQTMPA--KR 749

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALP 419
           R + + G     G+          ++L       V L           G  +  L++ L 
Sbjct: 750 RLVVISG----AGDRRDEDIRKQTQILGGV-FDEVILYQDQCQRGRADGEVLALLREGLQ 804

Query: 420 RSIHVHYSETMDGLFLFI---QSSLVDGDVVVV 449
            +      E + G F+ I    S L  GD+ ++
Sbjct: 805 GATRTSAVEEIRGEFVAIDTGLSHLQPGDLCLI 837


>gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
           8437]
          Length = 386

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 114/354 (32%), Gaps = 46/354 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A++I ITGS GKTTT  ++   L+         G+    +     +A      ++ I 
Sbjct: 42  TEASMIGITGSNGKTTTTSLVGRMLARGGIPARVAGNIGMALSE---VAPGMDQEEWLIS 98

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T   RP I  +  + PAHL     +E+   +K ++F   +      L
Sbjct: 99  ELSSFQLKG----TRQFRPRIGALLNLVPAHLDYHGSMEDYLESKGKLFANQQPGDIAVL 154

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D      L  +        ++ F + +  D          +Q W+  +L       + 
Sbjct: 155 NRDSDVCRRLAPQLRG----DVWWFSRQEPVD-----RGLMVKQGWVTARLPDGEELSLL 205

Query: 286 H-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G HM +N L    I        D   + L  F   E    R           
Sbjct: 206 PASQVRLPGIHM-ENALAASAIALAAGCPADALREELRTFTGVE---HRLEFVATVDGVR 261

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  +  +A+   ++         + + G +    +       +L  V     
Sbjct: 262 YYNDSKATNGKAATSAMESFTE-------PIVLIAGGLDRGVDF-----RELVPVFQKR- 308

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV 449
           +  +   G     L   L R+          +E +             GDVV++
Sbjct: 309 LKGIVTYGEAGDVL---LKRAEEASVPLRERAEEIADAVTRASRLAAAGDVVLL 359


>gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 476

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 130/358 (36%), Gaps = 36/358 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  + ++ VA  +      I ITG+ GKTT   +L+  L          G+    +    
Sbjct: 102 IKVIGEINVAWEILKDTNWIGITGTNGKTTVTHLLSHMLCDTGLYAPFAGNIGTPL-CKY 160

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   + K 
Sbjct: 161 AHSKKHEKIDWVVAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKK 216

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQ 269
            +   LEK+     NYDD         S + G+    SF KS   + D+ +       E+
Sbjct: 217 SL---LEKSDFRIYNYDDKNLRN-HYTSLSRGVWITTSFDKSNLIHCDYWIDDQAYIVER 272

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                +L+  S++      G H  QN+L+ +     +         +LS +        R
Sbjct: 273 GKKLFKLEHFSLK------GMHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLP---HR 323

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      +I++S   N  S  A IS +       EG+ I + G   +  E S+   
Sbjct: 324 METIYKNNDLEIINDSKATNFDSSIAGISSI-------EGQIIIIAGGRLKGNEYSEW-- 374

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDG 444
                 +    +  V+L G     LK AL       ++     +  L  F+   L + 
Sbjct: 375 ----IKVLKKKVKCVFLFGESSKVLKMALINEGFKENIFEFSELKELLNFVFHYLQNN 428


>gi|300813304|ref|ZP_07093659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512575|gb|EFK39720.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 438

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 142/386 (36%), Gaps = 49/386 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ L  A ++ S   +IAITG+ GKTTT  ++   L  + KTY  +G+    I     +A
Sbjct: 86  ISDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQILRQVNKTY-VVGNIGRGISE---IA 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + DF + E     L +    TH  +P +A++T +   HL      +   +AK +IF
Sbjct: 142 LEAKNNDFIVIEASSFQLED----THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIF 197

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LRKWKQCSEQSW 271
              +K     +NYDD   + LK          IY F   K  D +   L   K   +   
Sbjct: 198 ANQDKDDFSIINYDDRSRDDLKDLKS-----NIYYFSTEKK-DIRGCFLDDGKIIFKDGD 251

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  +             G H  +N++  + I  I     D   +++ +F   E    R  
Sbjct: 252 IREE---IIDIKDIKIPGIHNVKNVMGAIIIAKIFNISNDIIKQSIKIFSGVE---HRIE 305

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                   +  ++S   NP S   A+  ++         +  ++G   + G    S   +
Sbjct: 306 FVKKVNDVSFYNDSKGTNPDSTLVAVKAMTN--------KTILIGGGYDKGSDFNSLMEN 357

Query: 392 LAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           +A      N+  + + G       K+A    I V   + +        S    GD +++ 
Sbjct: 358 IAP-----NLRSLIVFGQTGPKMAKEAKNYGIEVFIVKDLPAAVKLGVSLAKKGDSILLS 412

Query: 450 --KSS---------NSCGFYRLINLL 464
              +S             F +++  L
Sbjct: 413 PACASWDMYSSYEERGKHFKKIVKEL 438


>gi|83746792|ref|ZP_00943840.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia solanacearum UW551]
 gi|83726561|gb|EAP73691.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia solanacearum UW551]
          Length = 501

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 128/379 (33%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+      DF + E
Sbjct: 142 QKWVLAVAGTHGKTTTTSMLAWILQDAGYD---PGFLVGGVPRNFGLSARLTASDFFVIE 198

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 199 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRAVPGQGRVL 258

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + + A+        +  FG    A + +       +    +V L G+    V
Sbjct: 259 VNGREESLKRVLARG---CWSEVELFGAEDGAGWAIANL---GDDDSFDVVLDGQVQGRV 312

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 313 RWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGVTVYD 369

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 370 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 419

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 420 GADQVFAYGAASGRDVLGWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLVM-S 478

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 479 NG-GFGGVHQKLLDALGER 496


>gi|15674501|ref|NP_268675.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes M1
           GAS]
 gi|56808749|ref|ZP_00366467.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Streptococcus
           pyogenes M49 591]
 gi|71910104|ref|YP_281654.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS5005]
 gi|94987921|ref|YP_596022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS9429]
 gi|94991805|ref|YP_599904.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS2096]
 gi|94993681|ref|YP_601779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10750]
 gi|209558848|ref|YP_002285320.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           NZ131]
 gi|25008814|sp|Q9A1C7|MURC_STRP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224736|sp|Q1JDE8|MURC_STRPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224737|sp|Q1JNC1|MURC_STRPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224739|sp|Q1J8C6|MURC_STRPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706332|sp|B5XJW3|MURC_STRPZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13621603|gb|AAK33396.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes M1 GAS]
 gi|71852886|gb|AAZ50909.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS5005]
 gi|94541429|gb|ABF31478.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS9429]
 gi|94545313|gb|ABF35360.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS2096]
 gi|94547189|gb|ABF37235.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10750]
 gi|209540049|gb|ACI60625.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes NZ131]
          Length = 442

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 125/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  +  DF      + +  S  +V+ QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D+      L  F   +      R        T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDMALVADHLKTFSGVK-----RRFTEKIINDTIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVKVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|239623059|ref|ZP_04666090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239522426|gb|EEQ62292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 451

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 118/340 (34%), Gaps = 37/340 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +  II ITG+ GK+T   +L   L +       +G+        +   R    +   +F
Sbjct: 105 FRDQIIGITGTKGKSTVTSLLYHILKNAGMDTMILGNIGIPALDHMEEVRPDTKI---VF 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +      V PHI ++  I   HL ++  +E+  +AK  IF+  +    +  
Sbjct: 162 ELSCHQLEYM-----TVSPHIGILVNIHEEHLDHYGTMEKYVAAKQNIFKNQKTDDILIC 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VV 284
           N           +S       I +       D       +  + +W+  + +   +    
Sbjct: 217 NV------QCLPESGTCPSMLIKAGVNEPGTDL---SVAEEPDGTWIRFRGRAYRIPVDE 267

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   ++ +  G+ +IL  D        +     E    R +    +      D+
Sbjct: 268 IRLLGQHNYFDIGVVYGVCAILGMDDGA---FTAGLKTYEPLPHRLQYLGERDGVRYYDD 324

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S +    +   A+  L             ++G M    +     + +L E LS   +SH+
Sbjct: 325 SISTICDTTIQALKTLKDTD-------TVLIGGMDRGID-----YRELIEYLSECQVSHI 372

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            L    + A    + + I+  Y E  D   L +   L DG
Sbjct: 373 IL----MEATGKRIYQEIYKFYPEFKDRPRLILAEHLEDG 408


>gi|293571733|ref|ZP_06682752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
 gi|291608190|gb|EFF37493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
          Length = 453

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 115/348 (33%), Gaps = 50/348 (14%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K      G+          +A      D  + EL    L  I        PHIAVIT I 
Sbjct: 140 KGVARLAGNIGYPASG---VAEEAKPEDKIVMELSSFQLMGITDF----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AH+      +E   AK  + + +     + LN++ S  + L  ++ A     +  F   
Sbjct: 193 EAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQSELQELAQRTKA----RVLPFSTK 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVD 311
           +     L       + +   +  + + +  +      G H  +N L  + +  +     +
Sbjct: 249 E----VLEDGVYADDHA---IYYKKEKIMEISELGVPGTHNVENALAAITVAKLYGISNE 301

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L +FH       R +           ++S   N  + K A+S            +
Sbjct: 302 AIRQTLHLFHGVP---HRTQYVGEIQGRKFYNDSKATNILATKMALSGFETA-------K 351

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSET 429
           + +L    + G            V SL  I  + + G     L DA  ++    +  +++
Sbjct: 352 VVLLAGGLDRGNTFDEL------VPSLKGIKAMIVFGQTKEKLIDAGKKAGIETIVTADS 405

Query: 430 MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465
           ++        +  DGDV+++    +S             F  ++N L 
Sbjct: 406 VEQAVPLALENSTDGDVILLSPANASWDQYPNFETRGNRFMEVVNQLK 453


>gi|39993|emb|CAA45555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|383709|prf||1904153A murD gene
          Length = 369

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 113/346 (32%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + 
Sbjct: 29  TSAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVT 85

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RP I++I  +  AHL      E    AK +++     +    +
Sbjct: 86  ELSSFQLMG----THAFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIV 141

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L     A  +    S    + A  +        E            +E V 
Sbjct: 142 NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAIL--------PLEEVV 193

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  + +V    A  +   K L+ F   +    R +           ++S
Sbjct: 194 -LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVK---HRLQYVTTVNGRKFYNDS 249

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +    +S           + + +L    + G         +       ++  V 
Sbjct: 250 KATNILATSKRLSAFD--------KPVILLAGGLDRGNGFDDLKPYM------KHVKAVL 295

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L+         HV   + ++       +   +GDV+++
Sbjct: 296 TFGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 341


>gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 492

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 111/328 (33%), Gaps = 41/328 (12%)

Query: 56  FILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAI 113
           F    +  GA L        V    +  +PV G  ++   AL  +   AR      ++AI
Sbjct: 66  FAALVLSPGAPLTHPKPHWTVDKARAADVPVIGDIELFARALAAIPADAR----PKVVAI 121

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  ++   L     T    G+    +         P      + E+    L 
Sbjct: 122 TGTNGKSTTTALIGWVLKQAGLTVHIGGNIGIGVLA----LSAPTPDAVYVVEVSSYQLD 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               LT    P +A++T I+P HL    G+E   +AKA +F+ +       +  DD +  
Sbjct: 178 ----LTTSFAPDVAILTNISPDHLDRHGGMEGYVAAKARLFQVMSPEKVALIGVDDDWGW 233

Query: 234 LLKAKSHALGIK--TIYSFGKSKNADF-----------QLRKWKQCSEQSWMEVQ--LQG 278
                 +  G++  TI +    +  D            +L   K   +     +     G
Sbjct: 234 KTVNALNDRGLRLSTITTRTPPQFVDPAGGVPVAELATRLPDQKPAFDAGRFIIVDATGG 293

Query: 279 K---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           K          +       G H AQN          L    + A+  L  F    G   R
Sbjct: 294 KLVADGVAIADLAPARSLPGRHNAQNAAFAYAAARALGVSTEAAVDGLMTF---PGLAHR 350

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAI 357
                + G    +++S   N  + + A+
Sbjct: 351 METVGHLGPVRFVNDSKATNADAARQAL 378


>gi|126649728|ref|ZP_01721964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
 gi|126593447|gb|EAZ87392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
          Length = 449

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 128/353 (36%), Gaps = 41/353 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S A  I ITGS GKTTT  ++   L++  K     G+      V   +A+   + D
Sbjct: 106 AYLISDAPFIGITGSNGKTTTTTLIFDMLNNGSKNPLIAGNIGT---VACGVAKEANEDD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   +P I+++T +  AHL      +  A AK  +    +++ 
Sbjct: 163 IIVTELSSFQLMG----TKTFKPKISILTNLYDAHLDYHGTFDNYAEAKFAVTRNQDESD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N D        A+S+A  I    S G++ N           ++++   +  QG+  
Sbjct: 219 YFIYNADQPIVVGYAAQSNAQKI-PFSSNGRTVNG--------ISADET--TIYWQGEPY 267

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N+L  +    ++  D     + L+ F    G   R +        
Sbjct: 268 MDRANIALPGKHNLENILAAVAACILVGCDKGKMEEVLATFG---GVRHRTQFVREWNGR 324

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S   N  + K+A+              + +L    + G   +     +       
Sbjct: 325 KIYNDSKATNCLATKSALDAFQA--------PVILLAGGLDRGHSFEELRSSM------N 370

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV 449
           ++  V   G   L   +   +S  V     ++ ++    +      +GD++++
Sbjct: 371 HVKGVVAFGETGLRFVE-FAKSCGVQQTVIAQNVEDAVHYAAPMSAEGDIILL 422


>gi|50913664|ref|YP_059636.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10394]
 gi|139474372|ref|YP_001129088.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes str.
           Manfredo]
 gi|59798145|sp|Q5XDR0|MURC_STRP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224740|sp|A2RGA7|MURC_STRPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50902738|gb|AAT86453.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10394]
 gi|134272619|emb|CAM30886.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes str.
           Manfredo]
          Length = 442

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 125/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  +  DF      + +  S  +V+ QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D+      L  F   +      R        T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDMALVADHLKTFSGVK-----RRFTEKIINDTIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVKVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|238924607|ref|YP_002938123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
 gi|238876282|gb|ACR75989.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
          Length = 463

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 126/344 (36%), Gaps = 34/344 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITG+ GKTTT  +    + +  K    +G+        +T +         + E+  
Sbjct: 121 IIAITGTNGKTTTTALTGEIMKNYFKDVRVVGNIGIPYTSMVTGST---GETVTVAEISS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I       +PH++ I  I P HL+    +E    AK +I +         LNY+D
Sbjct: 178 FQLETIDTF----KPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYCVLNYED 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD-FQLR-KWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  AK  A   K I+   KS+ ++ F L       +     +  +         + 
Sbjct: 234 EVLRDFAAKCPA---KVIFFSSKSELSEGFYLDGDIIIYAHDGVRDEVIDVNE----LNL 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  +N++    +       +D  ++ L VF   E    R      +      ++S  
Sbjct: 287 LGKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVE---HRIEYVTEKRGVRFYNDSKG 343

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NP    AAI  +  ++     R   ++G     G   QS + +  E      +  + L 
Sbjct: 344 TNPD---AAIQGIRAMN-----RPTLLIGG----GYDKQSEYDEWIEAFDG-KVKELVLI 390

Query: 408 GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     +++   R   ++    +T +    +     V GD V++
Sbjct: 391 GQTADKIEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 434


>gi|229006196|ref|ZP_04163882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
 gi|228755037|gb|EEM04396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
          Length = 450

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTTLTFEMLKEGQKHPVIAGNIGT---VACEVAQAAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD   +++   +++ G K ++S      A   +       + +   +  +G+ +
Sbjct: 219 YSVINADD--VDVMALSANSKGQKVLFS------ATKVIEDGACIKDGA---LYFKGEKI 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L  + +  I  L  F   + R +      N+ F+
Sbjct: 268 VEVQDIVLPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         + +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PVILLAGGLDRGNEFDDLIPYF------E 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  +   G     L  A  ++    +   + ++       S   DGDV+++
Sbjct: 371 HVKAILTYGQTAPKLVRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|149198597|ref|ZP_01875641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
 gi|149138312|gb|EDM26721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
          Length = 437

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 131/356 (36%), Gaps = 44/356 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +L  AA+   +   +AITG+ GKTT  EM    L ++       G+    +     +A
Sbjct: 96  MGELDFAAKFMPQTKFLAITGTNGKTTCTEMTQHTLKNLDYEAVACGNIGLPL---AEVA 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 DF + E+       I  L+ L +   A+I  ++  H+  +   ++   +K  I 
Sbjct: 153 LRDNQPDFAVVEISSYQ---IDLLSSL-KFDAAIILNVSEDHMDRYGTFDKYLDSKLMIR 208

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +                F  ++          ++S G  + AD  +              
Sbjct: 209 KFC-------------HFLAVQQDVECAQADMVFSIG-DEKADLMI---------GEELF 245

Query: 275 QLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           Q + + +        G H  +N L  L +++    D+  ++ A+S F   E R + +   
Sbjct: 246 QYRDQKIPLPKFSFYGKHNLENALGVLALLNSQKIDLQKSLLAMSDFTCSEHRLEDFATY 305

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N      +++S + NPAS+  A+   +      + ++I ++      G   ++  + + 
Sbjct: 306 QN---VLYVNDSKSTNPASLMVALETFAD-----KNKKIVLIA-----GGRDKNMDLSVV 352

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L    +  V+  G     LK         +     +G  L   S   +GDVV++
Sbjct: 353 NPLISKYVKEVFSYGECKENLKALWHTLCLTNLCADFEGAVLEAISCAKEGDVVLL 408


>gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis GM 1503]
          Length = 394

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 121/382 (31%), Gaps = 53/382 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------G 148
              + T+I ITG+ GKTTT  ++   L +  +    IG+    +                
Sbjct: 1   PSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPT 60

Query: 149 VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           +   LA M    VD  + E+    L   R      R  +   T ++  HL     + +  
Sbjct: 61  LQAMLAAMVERGVDTVVMEVSSHALALGR--VDGTRFAVGAFTNLSRDHLDFHPSMADYF 118

Query: 208 SAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            AKA +F  +   +  T  +  DD           A     I      + A ++      
Sbjct: 119 EAKASLFDPDSALRARTAVVCIDD----DAGRAMAARAADAITVSAADRPAHWRATDVAP 174

Query: 266 CSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                  +  +   G    +     G +   N L+ L I+  +    + A+         
Sbjct: 175 TDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPG---LREI 231

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G+  +    QGF  L+D  Y   P ++++ ++ L+        RR+AV+      G+
Sbjct: 232 RVPGRLEQIDRGQGFLALVD--YAHKPEALRSVLTTLA-----HPDRRLAVV--FGAGGD 282

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMD-- 431
                   +  + +      V ++  +             L  A          E  D  
Sbjct: 283 RDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRR 341

Query: 432 GLFLFIQSSLVDGDVVVV--KS 451
                  +    GDVV++  K 
Sbjct: 342 DAIRHAVAWARPGDVVLIAGKG 363


>gi|325982970|ref|YP_004295372.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
 gi|325532489|gb|ADZ27210.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
          Length = 464

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 129/381 (33%), Gaps = 47/381 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVD------- 161
           ++A+ G+ GKTTT  ML   L          IG    + G+   +  +  +         
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILDYAGLNPGFLIGGIPENFGLSARIGIIRSEHPQDSESNS 164

Query: 162 -----FGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                F + E            +  V   P  A++  I   H   F  +  I        
Sbjct: 165 AEISPFFVIEADEYDTAFFDKRSKFVHYHPRTAILNNIEYDHADIFPDLSAIKRQFHHFV 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G I  N  D   + + A+     ++    FG     D+  +     +   + + 
Sbjct: 225 RIIPNNGLIIANGKDENIKHVLAQGCWTPLEE---FGTET--DWNAQLLANNAIDIYFD- 278

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q+    +      +G H   N L  L         V+T I ALS F   +   +R     
Sbjct: 279 QIHQGCLHWDL--LGEHNRMNALAALIAARHAGVPVETGIAALSEFKSVK---RRMEKRG 333

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHI 390
                T+ D+ +  +P +++  ++ L   +  G+ R IAVL      M  MG        
Sbjct: 334 TVNGVTVYDD-FAHHPTAIQTTLNGLR--THVGQKRIIAVLEPRSNTMK-MGVWKDYL-- 387

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 SL    HV+         K  L   +  V Y + ++ L   I +     D V++
Sbjct: 388 ----AHSLQEADHVFCFTRDSQWAKSTLRTLNNRVDYCDDLNQLIQNIVAITKPEDHVLI 443

Query: 450 KSSNSCGF----YRLINLLLE 466
             SN  GF     +L++ L E
Sbjct: 444 M-SNG-GFGGIHDKLLSALQE 462


>gi|194290727|ref|YP_002006634.1| udp-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
 gi|193224562|emb|CAQ70573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 462

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 133/376 (35%), Gaps = 33/376 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     ++    + DF + E
Sbjct: 102 RKWVLAVAGTHGKTTTTSMLAWILEDAG---YNPGFLVGGVPQNFGISARVTESDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G I 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGQGRIV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +     +  +     ++  +  G  + +D    +      +   +V         V
Sbjct: 219 VNGVEESLARVLERGCWSEVEQ-FGVGDWRESD--AARTPAAPGKDAFDVWFGDAVAGTV 275

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V    G H   N L  +G    +      AI++LS F   +   +R       G  T+ D
Sbjct: 276 VWDLQGTHNRMNALAAIGAARHVGVPAAQAIESLSRFANVK---RRMEVRGVAGGVTVYD 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNIS 402
           + +  +P +++  +  L      G  R +AVL    E    +    +  A++  SL    
Sbjct: 333 D-FAHHPTAIQTTLDGLR--RRVGNARILAVL----EPRSNTMKLGVMKAQLPASLEQAD 385

Query: 403 HVWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            V+  G           L +AL P        + +  L   ++++   GD V+V  SN  
Sbjct: 386 LVFGYGAPAGKDALGWDLAEALAPLGATATAFQDLGTLVQAVRAAAQPGDHVLVM-SNG- 443

Query: 456 GFY----RLINLLLEE 467
           GF     +L++ L + 
Sbjct: 444 GFGGVHQKLLDALAQR 459


>gi|332799092|ref|YP_004460591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
 gi|332696827|gb|AEE91284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
          Length = 468

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 135/367 (36%), Gaps = 40/367 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA IIA+TG+ GKTTT  ++   L + +K     G+    +   +  A    D D+ + E
Sbjct: 123 KAPIIAVTGTNGKTTTTTLIGEILKNGEKNIILAGNIGIPLIREVEKAE---DKDYLVVE 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I       RP I+VI  I   HL+     E+   AKA I E   +     LN
Sbjct: 180 VSSFQLENI----MHFRPKISVILNITKDHLNRHKTFEKYIEAKARILENQIEGDYTVLN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
           YDD        K+       +  F + +       +     +   + ++  GK   V+  
Sbjct: 236 YDDPIVRTFAKKAK----PKVLFFSRKEE-----LERGAYVKNGVIVIRDNGKIYPVLKA 286

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L    +  I   +++   + +  F   E    R     N      I
Sbjct: 287 EELGIKGSHNLENALAAACVAWITRINLNNMAETMKDFRGVE---HRLEFVANIDGIKFI 343

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP + + AI  L +         + + G     G   +S + D  +      + 
Sbjct: 344 NDSKATNPDAAQKAIEALEE-------PIVLIAG-----GYDKKSDYSDFIKTF-KGKVK 390

Query: 403 HVWLSGFHVLALKD-ALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            + L G     ++D A+      +  + ++        ++   GDVV++  S +C  + +
Sbjct: 391 KLILIGDTASIIEDTAIKHGFFDIEKANSLQDAVKSAYNAAAAGDVVLL--SPACASWDM 448

Query: 461 INLLLEE 467
                E 
Sbjct: 449 FESFEER 455


>gi|75675242|ref|YP_317663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           winogradskyi Nb-255]
 gi|118595669|sp|Q3STT0|MURD_NITWN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74420112|gb|ABA04311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           winogradskyi Nb-255]
          Length = 466

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 116/382 (30%), Gaps = 49/382 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR    A  IAITG+ GK+TT  ++   +          G+    I         P    
Sbjct: 108 ARHAPDAPFIAITGTNGKSTTTALVAHLMREAGYDVQMGGNIGTAILS----LEPPRRGR 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    +     L   + P + ++  ++P HL     IE  A  K  +  G++  G
Sbjct: 164 VHVIEMSSYQID----LAPSLDPTVGILLNLSPDHLDRHGTIEHYAQVKERLIAGVQPQG 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQG 278
           T  +  DD +   +  +    G   +    K   A     +  +    S  +  E+   G
Sbjct: 220 TAVVGVDDHWCAAIADRQEQAGRSVVRVSVKRPLAHGVSVEQDRIVLVSGGARSEIADIG 279

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +    G H AQN          L    D   + L  F    G   R      +  
Sbjct: 280 G----IGSLRGRHNAQNAACASAGALALGVSRDILQQDLRSF---PGLAHRMEQVGRKAH 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  + + A+S   +I     G+  +  G +  +                 
Sbjct: 333 VLFVNDSKGTNADATEKALSSFDEIFWIAGGKPKS--GGIASLDAFFPR----------- 379

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV---KS 451
             I   +L G         L   +    S T++                G VV++    +
Sbjct: 380 --IRKAYLIGEAAQEFAATLEGKVAYEISGTLEAAVPAAARDAEGAGRAGAVVLLSPACA 437

Query: 452 S---------NSCGFYRLINLL 464
           S             F  L+  L
Sbjct: 438 SFDQFRNFEVRGDRFRELVQAL 459


>gi|94989796|ref|YP_597896.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10270]
 gi|166224738|sp|Q1JIH1|MURC_STRPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94543304|gb|ABF33352.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10270]
          Length = 442

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 125/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  K  DF      + +  S  +V+ QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEKGNDFIAYDITRTTNGSDFKVKHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D+      L  F   +      R        T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDMALVADHLKTFSGVK-----RRFTEKIINDTIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVKVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|227875257|ref|ZP_03993399.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
 gi|227844162|gb|EEJ54329.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
          Length = 458

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 122/385 (31%), Gaps = 36/385 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   ++            ++A+ G+ GKTTT  ML+ AL  +    +   +    I    
Sbjct: 72  LEIWHRSQALDFCTRSKDLLAVAGAHGKTTTSAMLSKALWDVGADPS--FAIGGVILEYG 129

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T AR+       + E   S    + +      P + V+T I P HL ++   E    A  
Sbjct: 130 TGARLGRG-RAFVIEADESDGSFLNYA-----PLVEVLTNIEPDHLDHWGSREAFDQAFV 183

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQS 270
           +    +   G I    DD+    L  + H+      Y FG     A   +   +      
Sbjct: 184 DFTARIRPGGAIVACGDDAGIRRLAPRFHSGAALVSYGFGAPLPGAALVVALGEPRLGAG 243

Query: 271 WMEVQLQGKSMEVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKA--LSV 319
             EV L+                    G H   +    LG  + L   V           
Sbjct: 244 HAEVDLRVMRCHPEQLLFHDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAFCQS 303

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G G+R +     G   + D+ Y  +P  + A +     ++ +  GR +       
Sbjct: 304 LSSFTGTGRRMQFLGEIGGVRIYDD-YGHHPTEVAATLGAARDLAGN--GRLLVCF--QP 358

Query: 380 EMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            +   +++F  + A VLS          Y        G    A+ D +       +   M
Sbjct: 359 HLYSRTKTFASEFATVLSAADEVVVCGVYAARENPTDGADGDAIADLM--GEKGQFISDM 416

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
                 + +    GD+++   + S 
Sbjct: 417 YAAGDAVYNLAKPGDLLLFLGAGSI 441


>gi|240080774|ref|ZP_04725317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae FA19]
 gi|268596891|ref|ZP_06131058.1| hypothetical protein NGEG_00968 [Neisseria gonorrhoeae FA19]
 gi|268550679|gb|EEZ45698.1| hypothetical protein NGEG_00968 [Neisseria gonorrhoeae FA19]
          Length = 458

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 123/375 (32%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +       G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTAPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG          +  + +     +V L GK  
Sbjct: 227 LIVCNG---QQQSLQDTLDKGCWTPVEKFGTGHG-----WQIGEVNADGSFDVLLDGKKA 278

Query: 282 EVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +        DV TA +AL  F   +   +R          T
Sbjct: 279 GHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +         
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PA 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    +   +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGADWDVAEALAPLGCRLRVGKDFDTFVAEIVKNARTGDHILVM-SNG 444

Query: 455 CGFY----RLINLLL 465
            GF     +L++ L 
Sbjct: 445 -GFGGIHTKLLDALR 458


>gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 518

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 147/474 (31%), Gaps = 65/474 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V          +L +
Sbjct: 34  QHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSYQNGATALIV 91

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142
                     AL   A      +    I ITG+ GKT+T      AL+       A I +
Sbjct: 92  TNIQRA---MALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148

Query: 143 YNN----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N            +  P +L      R  VD       + +S    +    + +   I 
Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDRVYSLHFGIG 208

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGI 244
           V   I+  H+              K ++   L  +    LN   D F E+ +A   +   
Sbjct: 209 VFLNISSDHVGQNEHPDFANYLFCKEQL---LLNSSVCVLNTQMDHFEEVYQAAKVSTAP 265

Query: 245 KTIYSFGK---SKNADFQLRKWKQCSEQSWMEVQ----------LQGKSMEVVHHGIGYH 291
             IY FG+     + D   +        S  ++           L G   E      G +
Sbjct: 266 DKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDG---EYQSSVAGDY 322

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N        +I      T  +A    H       R      Q   T+  + Y  + A
Sbjct: 323 NVGNATAAAICAAIGGVKKKTIQEAFGQVHIAG----RMEVIRTQEHGTVYVD-YAHDYA 377

Query: 352 SMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           S+K  ++ L  Q       +   VLG     G    S   DL + L+   ++ V L+   
Sbjct: 378 SVKRLLAFLKGQQHQGEPSQITVVLGAP---GNKGVSRRPDLGKALAEERVNRVILTTDD 434

Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+   +   I       V Y             +   GD+VV+  K 
Sbjct: 435 PAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKG 488


>gi|238892710|ref|YP_002917444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545026|dbj|BAH61377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 457

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 133/379 (35%), Gaps = 42/379 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T  L +        G     +     ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMATWILDACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   + + A       + +      +   +Q +  K  ++ S  EV L G+ + EV   
Sbjct: 222 NDINLKQVMAMGCWSEQELV-----GEQGHWQAK--KLNADASQWEVLLDGEKVGEVKWA 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINAR---RRLELRGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A +  L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLQALRG-KVGGTARILAVLEPRSNTMK-MGVCKDDLAPSLGR------AD 382

Query: 403 HVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L       + V  + +A  +    H+S  +D L   +  +   GD ++V  SN  GF
Sbjct: 383 EVFLLQPQHIPWQVAEVAEACVQ--PAHWSADVDTLAEMVVKTAHPGDHILVM-SNG-GF 438

Query: 458 Y----RLINLLLEEFPAIQ 472
                +L++ L ++  A +
Sbjct: 439 GGIHQKLLDKLAQKAAAAE 457


>gi|229829365|ref|ZP_04455434.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
 gi|229792528|gb|EEP28642.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 143/427 (33%), Gaps = 62/427 (14%)

Query: 51  YDGHDFILHA--------VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGA------ 94
           +DG+D +  A        ++  A  +    +         I  P   VD  L        
Sbjct: 30  FDGNDTLDEAGLILKHPQLEGVAIYLGELPEEAYDDFDTVILSPGVPVDSPLVESLKARG 89

Query: 95  ---LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                ++ +A RL  +  + AITG+ GKTTT  M+ + L +       +G+         
Sbjct: 90  KRIWGEIELAYRL-GRGHLAAITGTNGKTTTTSMVGLILRTCFPDVQVVGNIGTPYTE-- 146

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A    D    + E+    L  I        P ++ I  I P HL+    +E   + K 
Sbjct: 147 -VAADTKDETRIVAEVSSFQLETIETF----HPLVSAILNITPDHLNRHHTMENYIACKE 201

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I E      T+ LN +D    +L+     L    ++  GK      +L+K     E+  
Sbjct: 202 RITENQTADETVVLNLEDP---ILREFGKTLPNHVVWFSGKR-----RLKKGYYYREEDR 253

Query: 272 MEVQLQGKSMEVV-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                QG+  E +        +G H  +N +  + I   +   +D   + L  F   E  
Sbjct: 254 SIRYCQGQEEEFILSVRELQVVGRHNYENAMAAIAISRAMGVPMDKIKEGLRAFTAVE-- 311

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R      +      ++S   NP +    I  +   +    G            G   +
Sbjct: 312 -HRIEYVCTKRGVRYYNDSKGTNPDAAIKGIEAMDSPTCLIGG------------GYDKK 358

Query: 387 SFHIDLAEVLSLY--NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
           S   D  + +  +   +  + L G     +             Y++T++       +   
Sbjct: 359 S---DFGDWIDAFKGKVKLLVLIGETRAQIAKCCQDHGFNDFVYADTLEEAVKICYTKAK 415

Query: 443 DGDVVVV 449
           +GD V++
Sbjct: 416 EGDEVLL 422


>gi|94676958|ref|YP_588950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|118595641|sp|Q1LSW4|MURD_BAUCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94220108|gb|ABF14267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 446

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 129/353 (36%), Gaps = 43/353 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++AITG+ GK+T  +++    +         G+    +     L+ +     
Sbjct: 99  FLREVTVPVVAITGTNGKSTVAKLVGTMANCAGLKVGVGGNIGYPV-----LSLLQQSHQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++  +A I  I+  H+  +  G+++   AK +I+   ++ 
Sbjct: 154 LYVLELSSFQL----ETTKNLKVAVATILNISEDHMDRYPLGLQQYREAKLKIY---KQA 206

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQL 276
               +N DD     L A S      +I  FG         D+Q ++W     +  ++   
Sbjct: 207 KIYIINDDDKL--TLPANSTNKEYCSIIKFGIKSGHYCLGDYQGKQWLMAYGKPLLDCN- 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      IG H   N L  L +   +       + AL  F    G   R+   L +
Sbjct: 264 -------EIKIIGRHNLLNALAALALAEAIAIPRQACLIALRQFS---GLMHRFELVLER 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S KAA++ L+      +G    +LG   ++ + S      L   +
Sbjct: 314 KGIRWINDSKATNVGSTKAALNELT-----VDGTLHLLLGGDGKLADFS-----SLQPFV 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              NI H++  G     L      S     ++T+      I + +  GDVV++
Sbjct: 364 QGNNI-HLYCFGKDSKKLAALNQHS--ATITQTLSQAMHIINNQVKAGDVVLL 413


>gi|187932076|ref|YP_001892061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|226711911|sp|B2SDR8|MURD_FRATM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187712985|gb|ACD31282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 416

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 125/353 (35%), Gaps = 53/353 (15%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQI----NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    +  +                     G     ++Q+ +       + +   +
Sbjct: 197 --SNDFFVYDVHN---------------------GIKYAGEYQIIRGAIYRNSTKLLDIV 233

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K         G H  +N+++ L I+  L  D++ AI ++  F   +G   R +     
Sbjct: 234 ETK-------LFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKIIKKV 283

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S   N  +  AA++ ++          I +LG + + G+ S      + + L
Sbjct: 284 NGTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----MIKSL 333

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 334 DKY-VKYVYIYGVDKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|167896008|ref|ZP_02483410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 7894]
          Length = 160

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 320 FHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S      R+ V+G+M
Sbjct: 7   FAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP----RVLVIGEM 62

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G+   +FH ++        I  ++  G       DA       H+ +    +   + 
Sbjct: 63  GEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLA 121

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++      ++VK S      R+++ L  E
Sbjct: 122 ANFGAHATLLVKGSRFMKMERVVDALANE 150


>gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. Hall]
 gi|166224758|sp|A7FZA3|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224759|sp|A5I7P2|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A str. Hall]
          Length = 458

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNGMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGIKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  + I     E       +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|313206530|ref|YP_004045707.1| udp-n-acetylmuramate/alanine ligase [Riemerella anatipestifer DSM
           15868]
 gi|312445846|gb|ADQ82201.1| UDP-N-acetylmuramate/alanine ligase [Riemerella anatipestifer DSM
           15868]
 gi|315023529|gb|EFT36533.1| UDP-N-acetylmuramate--L-alanine ligase [Riemerella anatipestifer
           RA-YM]
 gi|325336021|gb|ADZ12295.1| UDP-N-acetylmuramate-alanine ligase [Riemerella anatipestifer
           RA-GD]
          Length = 452

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 108/309 (34%), Gaps = 37/309 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   + S+   IA+ G+ GKTTT  ++       K+       +   I        +
Sbjct: 100 RAKVLGLITSETECIAVAGTHGKTTTSSLVAHL---CKEVNLSFSGFLGGIAENFGSNFI 156

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E       E       + P  A+IT+    HL  +     I     +    
Sbjct: 157 FNGKDYSVVEA-----DEYDRSFLNLAPDWAIITSTDADHLDIYGDKSTIEKGFRDFAHL 211

Query: 217 LEKTGTIF----LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +   +F    +N D                +++ ++  ++ AD+   + +   +    
Sbjct: 212 VSEERQLFVRKGINLD----------------RSVTTYAVNEKADYYSDELRLEGDSISF 255

Query: 273 EVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                 G++        G H  +N    L ++  +   ++   +ALS F    G  +RY 
Sbjct: 256 NFYTPYGETQRFSWEIPGIHNVENATAALAVLHKMGVSLEDLKEALSKF---RGIKRRYT 312

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +       ID+ Y  +P  + A I  +    P    +++ V+     +   ++ F  D
Sbjct: 313 KHIFPNGKIYIDD-YAHHPTELNAVIGSIRTFYPD---KKLLVVFQ-PHLFSRTRDFADD 367

Query: 392 LAEVLSLYN 400
            A+ LS  +
Sbjct: 368 FAKSLSQGD 376


>gi|223043731|ref|ZP_03613774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
 gi|222442828|gb|EEE48930.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
          Length = 449

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 123/345 (35%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A II +TG+ GKTT   ++         T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIGVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIG---YVASKVAQEVKADEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIDE----YKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N    + +    ++  L  KT+Y   + +     ++          + + ++        
Sbjct: 222 N----YHQRHLIETENLKSKTLYFSTQQEVNGIYIKDGFIVFNGVRI-INVKD------L 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +    +    V   + +L+ F    G   R +           ++S
Sbjct: 271 VLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFS---GIDHRLQYIGTHRTNKYYNDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A++  +Q         I  L    + G            +  + N+  + 
Sbjct: 328 KATNTLATQFALNSFTQ--------PIIWLCGGLDRGNDFDEL------IPYMNNVRVMI 373

Query: 406 LSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G            +  +V  +  ++     IQ  +   DVV++
Sbjct: 374 VFGETQEKFAKLGNSQGKYVIKATNVEDAVDKIQDIIEPNDVVLL 418


>gi|322412250|gb|EFY03158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 452

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 107/328 (32%), Gaps = 38/328 (11%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  ++    G+        +  A      D  + EL    L          +P
Sbjct: 129 MIADVLNADGQSALLSGNIGYPASEIVQKASAN---DTLVMELSSFQLMG----VDTFKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAVIT + P HL      E+  +AK  I   +     + LN +      L   + A   
Sbjct: 182 HIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTAEDYLILNANQEISAALAKITKA--- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGI 302
            T+  F   +     +       +     +  +G  +  V +    G H  +N L  + +
Sbjct: 239 -TVIPFSTQE-----VVDGAYLEDGM---LYFKGHPIMPVVNLGVPGEHNIENALAAIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     D  ++ LS F   +    R +        T  ++S + N  + + A+S    
Sbjct: 290 AKLSGIADDVIVEVLSHFGGVK---HRLQLVGKIKDITFYNDSKSTNILATQKALSGFDN 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421
                  +++ ++    + G        DL        +  + + G     +K A    +
Sbjct: 347 -------KKLVLIAGGLDRGNEFDDLVPDL------RGLKQMIILGESAERMKRAAETAN 393

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +  +             GD +++
Sbjct: 394 VPYREAADVAAATELAFQEAQAGDTILL 421


>gi|304396923|ref|ZP_07378803.1| UDP-N-acetylmuramate [Pantoea sp. aB]
 gi|304355719|gb|EFM20086.1| UDP-N-acetylmuramate [Pantoea sp. aB]
          Length = 450

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 143/408 (35%), Gaps = 30/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMAAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E            +  V   P 
Sbjct: 124 ILEACALEPGFIIGGVPGNFDVSAKLGKSP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I L   D   + + A       +
Sbjct: 180 TLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILLPEHDPNLKQVMAMGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           ++      ++  +Q +  K  ++ S  E+ L G+ + EV    +G H   N LM +    
Sbjct: 240 SV-----GEHGRWQAK--KLTNDASHWEIWLDGEKVGEVNWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL+ F       +R           + D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVKPEDAGQALNTFINAR---RRLELRGEVNSIKVYDD-FAHHPTAILATLAALRS-K 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFH--VLALKDALPRS 421
             G  R +AVL    E    +    +   ++  SL     V+L   H     + D     
Sbjct: 348 VGGRARILAVL----EPRSNTMKMGVSKNDLAPSLARADEVFLFQPHHIPWQVSDVAEAC 403

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           I   H+S  +D L   +  +   GD ++V  SN  GF  +   LL+  
Sbjct: 404 IPPAHWSADIDTLVEMVVKAAQPGDTILVM-SNG-GFGGIHQKLLDRL 449


>gi|167614201|gb|ABZ89704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 381

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 103/309 (33%), Gaps = 36/309 (11%)

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164
           + G TT  +++ +  + + +  A +G+  N     L   +        I           
Sbjct: 1   TNGTTTVTQLINLLSNLLGQKTATMGTLGNGFHDNLYPTKNTTSSSIFIHSFLSQVYKKK 60

Query: 165 ---FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                + +S  G I+     +  +I + T +   HL     +E+  +AK  +F    +  
Sbjct: 61  AKLITMEVSSHGLIQNRVKNIPFYITIFTNLTQDHLDYHQNMEQYEAAKWLLFSK-HQVQ 119

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---------LRKWKQCSEQSWM 272
            I LN +D + +    K         Y+   +     Q             K  +    +
Sbjct: 120 KIILNANDKYGKKWLKKLFNY-----YTVAVTIKNSIQKKYSTKWLNATNIKYYNNYVNI 174

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +    S E+    IG     N+L+++  +  L   +   +   +   P  GR + +  
Sbjct: 175 HFESSWGSSEISSCLIGDFNVINLLLSVAALLELGHALSDIVNICNKVQPINGRMQIF-- 232

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +    +    Y   P +++     L+ I  H +     + G   E  +  ++    +
Sbjct: 233 --TKNNKPIFIIDYAHTPDALQ---KTLNAIRLHYKRYIWCIFGCGGEKDKTKRAIMGSI 287

Query: 393 AEVLSLYNI 401
           AE +S   I
Sbjct: 288 AEKMSNQVI 296


>gi|307638150|gb|ADN80600.1| UDP-N-acetylmuramoyl alanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 908]
 gi|325996749|gb|ADZ52154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 2018]
 gi|325998344|gb|ADZ50552.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 2017]
          Length = 447

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 137/404 (33%), Gaps = 54/404 (13%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +     P+    + L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K 
Sbjct: 37  PLNEKYAPLIAEKN-LAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKK 95

Query: 137 YACIGSYNNHIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHL 181
            A +G+    I             TL  +  D++  I      F + +S    ++     
Sbjct: 96  TALLGTRGFFINDKRIKEKGLTTPTLLELYGDLEEAIRLKCEYFIMEVSSHAIVQKRIAG 155

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKS 239
           +   + V+T I   HL     IE    AK   F   +  G   +N D  ++ F  + A++
Sbjct: 156 LDFALKVLTNITSDHLDFHQNIENYRDAKNSFF---KDEGLKVINRDETNALFNPINART 212

Query: 240 HALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +AL  K    + +F  + +    L   +   + +  E  L      +    +G +   N+
Sbjct: 213 YALDKKAHLNVQAFSLNPSISASLCYQQDLRDPNVKETAL------IHSPLLGRYNLYNI 266

Query: 297 LM-TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           L   LG+  +    ++T    L  F+  +GR +            L+   +      M+ 
Sbjct: 267 LAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQ 320

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------- 408
                         +  A+ G     G+  ++    +  + S Y    +  S        
Sbjct: 321 VFENFKNQ------KITALFGA---GGDRDKTKRPKMGAIASCYAYKIILTSDNPRSENE 371

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  +   +  S  V   +      L    +L   +V+++  
Sbjct: 372 EDIIKDILKGINDSSKVIVEKDRKKAILNALENLKGDEVLLILG 415


>gi|307140927|ref|ZP_07500283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|331644982|ref|ZP_08346099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|284924407|emb|CBG37531.1| murein peptide ligase [Escherichia coli 042]
 gi|331035957|gb|EGI08195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|332346312|gb|AEE59646.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMNK88]
          Length = 457

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPVDAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|270265035|ref|ZP_06193298.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
 gi|270040969|gb|EFA14070.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
          Length = 459

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 127/375 (33%), Gaps = 44/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEACGYQPGFVIGGVPGNFDVSARLGGSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   ++    K   + S  EV L G+   EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GEEGAWRAH--KLTPDASHYEVFLDGEKAGEVKW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A    +V        +R          T+ D+ 
Sbjct: 274 ALVGEHNMHNGLMAIAAARHVGVQPADA---CAVLGDFINARRRLELRGEANGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  MG         L         
Sbjct: 330 FAHHPTAILATLAALRG-KVGGTARILAVLEPRSNTMK-MGISKNDLAPSLGR------A 381

Query: 402 SHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L   H     V  + +A  +    H+S  +  L   I  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPHHIPWQVAEVAEACVQ--PAHWSADLGTLVDMIVRTAQPGDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEE 467
           F     RL+  L  +
Sbjct: 438 FGGIHDRLLEALANK 452


>gi|240141485|ref|YP_002965965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
 gi|240011462|gb|ACS42688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
          Length = 455

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 100/316 (31%), Gaps = 29/316 (9%)

Query: 59  HAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            A+    G+ + + +   ++G      IPV G  ++          A L   A  +AITG
Sbjct: 67  SALVLAPGVPLTHPEPHWTVGLARQAGIPVIGDIEIF-----CRERAALAPNAPFVAITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  +    L    +     G+    I         P      + EL    +   
Sbjct: 122 TNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILS----LEPPAATCVHVVELSSFQID-- 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  ++P + ++  + P HL     +E  A+ K  +  G        +  DD +   +
Sbjct: 176 --LTPSLKPGVGILLNLTPDHLDRHGTMENYAAIKERLVAG---ADLAVIGVDDPYCAAI 230

Query: 236 KAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +     I+  +   G +           +  + + +        +  +   +G H  Q
Sbjct: 231 AERRTGERIRLHVEGHGDAAGDYVGANGTVRGPDGAVI------AEVTGIQALLGDHNLQ 284

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    +     L           +      G   R       G    +++S   N  S +
Sbjct: 285 NAAAAVAAAIRLGLTSAEIA---AGLKSFPGLAHRMEPLRRIGPTLFVNDSKATNADSTE 341

Query: 355 AAISVLSQISPHGEGR 370
            A+     I     G+
Sbjct: 342 KALLAFRDIHWIVGGK 357


>gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
 gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
          Length = 451

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 141/439 (32%), Gaps = 88/439 (20%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ D+R +     F  +K P  + H FI                        +I +   
Sbjct: 4   HITDDTRKLREDSIF--LKTPQ-NAH-FIESL-------------------PQNIRILER 40

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D++    N         +   +I ITG+ GKTTT   +   L  +    A +G+    I 
Sbjct: 41  DELKEYFN---------TNIKLIGITGTNGKTTTAAAIYSVLLDMGYKVALLGTRGMFIN 91

Query: 149 VPL---------TLARMPVDVDFG--------IFELGMSHLGEIRFLTHLVRPHIAVITT 191
                       +L  +  D+D          + E+    + + R   + +   + ++T 
Sbjct: 92  DTRKKPKGLTTPSLLELYEDIDMAANMGCDFFVMEVSSHAIKQERI--YGLEFCLKILTN 149

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL      E+ A  K +  +         +N DD     ++   H      + ++G
Sbjct: 150 ITSDHLDYHKTWEDYAKTKMQFLQ--SGECIKIINLDDKSGASMRFYPH------VLTYG 201

Query: 252 KSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVH---HGIGYHMAQNMLMT-LGIVSIL 306
                   +  +       + M ++LQ  SM+         G     N++   L I +I 
Sbjct: 202 VESKGHLFVNAYGLQDGIFAQMSLRLQKDSMQECVIESSLFGLFNLYNLMAATLAIHAIT 261

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+ +    +  F    GR +            L+   +      MK         +  
Sbjct: 262 KQDIQSICACVKNFGGVSGRMEIV------SKTPLVIIDFAHTTDGMKQVFESFKTKNIS 315

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS 421
                  V G     G+  +S    +      Y    ++++       + L++   + + 
Sbjct: 316 ------VVFGA---GGDRDKSKREKMGACARFY-AKKIYITNDNPRSENPLSIAQEIAKG 365

Query: 422 IHVHYSETMDGLFLFIQSS 440
           +   ++++++   + I+ +
Sbjct: 366 V---FAKSLNETDIEIKEN 381


>gi|269101758|ref|ZP_06154455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161656|gb|EEZ40152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 124/346 (35%), Gaps = 39/346 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++AITGS GK+T   ++              G+          L  +  + +  
Sbjct: 104 REVTKPVVAITGSNGKSTVTSLVGEMAKEAGIDVGVGGNIGF-----AALDMLAQNHELY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +    AV   ++  H+  + G+E+ + AK  IF         
Sbjct: 159 VLELSSFQL----ETTSSLHLAAAVYLNLSEDHMDRYQGLEDYSQAKMRIFHH---ANLA 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N +D       A         + SFG     D+ L       ++ W+ +  Q      
Sbjct: 212 VYNRND------LATKPTDFTGAMTSFGFDDQ-DYGLVLI---DDREWLAINQQPLMPAD 261

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  L +      D + A +A        G   R + A+ +     ++
Sbjct: 262 EIALVGRHNVANSLAALALADAAGIDREAACRA---LRRYTGLAHRCQLAVTKHGVRWVN 318

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N AS +AA++ L     +  G+   ++G   +  + S     +L  VL+  N+  
Sbjct: 319 DSKATNVASTEAALNGL-----NLAGKLHLLVGGDGKGADFS-----ELKTVLADLNV-Q 367

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  G       + +  +I V   ETM        S+   GD++++
Sbjct: 368 LYCFGRDGYQFAELVDNAILV---ETMAQAMELAASTAQSGDMILL 410


>gi|292492398|ref|YP_003527837.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
 gi|291580993|gb|ADE15450.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
          Length = 457

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 129/367 (35%), Gaps = 27/367 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  +L   L          IG      GV   L R P    + + E  
Sbjct: 105 VLAVAGTHGKTTTSSLLAWILEYAGHGPGYLIGGVPRDFGVSAQLGRSP----YFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP   V+  +   H   F  +E I      +   +   G I   
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTLVLNNLEYDHADIFPNLEAIQQQFHYLVRTVPSNGLILAP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
             D+  E + A      +  I   G +K  D  L       + S  EV  +G     V  
Sbjct: 221 AGDNALEAVLAMGCWTPVAPI---GMAKEKDCALTAAAVAEDGSRFEVWREGAYQSQVSW 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G+H   N L  +G        ++ A +AL  F    G  +R          T+ D+ 
Sbjct: 278 SLLGHHNVANGLAAIGAAHHAGVPIEQACQALERFQ---GVRRRLEVCGKVKGVTVYDD- 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++   ++ L   +  GE R IAVL    E    +     H + LA  L+L +  
Sbjct: 334 FAHHPTAIAKTLAGLR--ARVGEARLIAVL----EPRSNTMKLGIHKESLAPALTLADRV 387

Query: 403 HVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            ++        L  A             +  +   + +   +GD +V+  SN  GF  + 
Sbjct: 388 LLYQPPDLAWPLAPAFHSLGAKASVFADIQAIVDNLCAHAQEGDHIVIM-SNG-GFGHIH 445

Query: 462 NLLLEEF 468
             LL+  
Sbjct: 446 QRLLKAL 452


>gi|238761744|ref|ZP_04622718.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
 gi|238699858|gb|EEP92601.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
          Length = 461

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 134/377 (35%), Gaps = 44/377 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI G+ GKTTT  M+T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAIAGTHGKTTTAGMVTWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  ++ I      +   +  TG I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK     + S  EV L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKVAV--DASVYEVFLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGMCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L         V+ + +A  +    H+S  +D L   +  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAHWSADIDTLVDMVVKTAQPGDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEEFP 469
           F     +L+N L ++  
Sbjct: 438 FGGIHDKLLNALSQKAE 454


>gi|167041008|ref|YP_001663993.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300913781|ref|ZP_07131098.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307725533|ref|YP_003905284.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
 gi|166855248|gb|ABY93657.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300890466|gb|EFK85611.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307582594|gb|ADN55993.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
          Length = 876

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 135/399 (33%), Gaps = 50/399 (12%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V  A+  +      ++   II+ITG+ GKTT   M    L +   T     +   +I 
Sbjct: 459 RNVAKAIVDMLFPKGSKATIPIISITGTNGKTTVTRMTAHILKTYGYTVGMTCTDGIYID 518

Query: 149 ----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL- 197
                      P +      D +     L  +  G IR         + VIT I+  HL 
Sbjct: 519 DTCVYKGDNTGPKSAKTCLADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLG 578

Query: 198 -SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                 +E++A  KA + E +++ G   LN DD     L  ++       I  F    N 
Sbjct: 579 IDGIETLEDLAFVKALVVEAVKEDGYSVLNADDPMTPYLAQRAKG----KIIYFSMYDNN 634

Query: 257 ------------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                          ++          +   ++ + +     G   +  +N L  +    
Sbjct: 635 LTVKKHIEKGGIAVYVKDGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASY 694

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +   ++   K +  F+             N G F ++ + Y  N A +K+ I    ++ 
Sbjct: 695 GVKVPINIIAKGIKTFYCDTTHNPGRFNLFNVGNFRVLVD-YGHNIAGIKSVIEAAQKLD 753

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLAL 414
            +   R I V+G   +    S    + + E+        +++           G     L
Sbjct: 754 AN---RLIGVIGVPGDRINSSI---LKVGEICGQ-GFDFIYIKEDLDLRGRKPGEVAKLL 806

Query: 415 KD-ALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVV 449
           +  A+   I     +T+      +++++     GD++VV
Sbjct: 807 EQGAIKGGIDRKKIKTILKETEALRAAMYNAEAGDLIVV 845


>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae 642]
          Length = 448

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 126/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  D++  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDIELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLRQFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S      +A+
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-GLRAPVAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      + G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VVLGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|300935900|ref|ZP_07150856.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
 gi|300458919|gb|EFK22412.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
          Length = 445

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 140/418 (33%), Gaps = 38/418 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + +F + E            +  V   P  
Sbjct: 112 ILEQCGYK---PGFVIGGVPGNFEVSARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDALP 419
            G  R IAVL      M  MG         L           V+L         + + + 
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVVE 389

Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
             +   H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 390 ACVQPAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 445


>gi|289579519|ref|YP_003478146.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
 gi|289529232|gb|ADD03584.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
          Length = 876

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 153/475 (32%), Gaps = 72/475 (15%)

Query: 29  GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAV-----------QKGAGLVVVNTD--M 74
           GI+ID +  I P     A++     G D     +           + GA + +  +    
Sbjct: 389 GIAIDKTDEIHPNNIEIAVRAAKAIGLDIAGIDITMEDIKKPLTEKNGAIIEINASPGIR 448

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +    S   P     +V  A+  +      ++   II+ITG+ GKTT   M    L +  
Sbjct: 449 MHHYPSKGKP----RNVAKAIVDMLFPKGSKATIPIISITGTNGKTTVTRMTAHILKTYG 504

Query: 135 KTYACIGSYNNHIG----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            T     +   +I            P +      D +     L  +  G IR        
Sbjct: 505 YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNIDAAVLETARGGIIREGLGYDLA 564

Query: 185 HIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            + VIT I+  HL       +E++A  K+ + E +++ G   LN DD     L  ++   
Sbjct: 565 DVGVITNISEDHLGIDGIKTLEDLAFVKSLVVEAVKEDGYSVLNADDLMTPYLAQRAKG- 623

Query: 243 GIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  F    N                ++          +   ++ + +     G   
Sbjct: 624 ---KVIYFSMYDNNLTVKKHVEKGGIAVYVKDGVIVIANGQIIPVVKIEEIPAALSGKVL 680

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +  +N L  +     +   ++   K +  F+             N G F ++ + Y  N 
Sbjct: 681 YNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFNLFNVGNFRVLVD-YGHNI 739

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
           A +K+ I    ++  +   R I V+G   +    S    + + E+        +++    
Sbjct: 740 AGIKSVIEAAQKLDAN---RLIGVIGVPGDRINSSI---LKVGEICGE-GFDFIYIKEDV 792

Query: 407 ------SGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  G     L++         + I +   ET              GD++VV
Sbjct: 793 DLRGRKPGEVAKILEEGAIKGGMDRKKIKIILKET--EALKAAMYHAEAGDLIVV 845


>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
 gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
          Length = 444

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 121/352 (34%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 95  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----AMEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   +++   AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD        K         ++  K   A   +   +    +    +    +
Sbjct: 207 EDAFIYWNDDPIIRRELEKHGLKAHLYPFAAVKEDGAIAYVEDGEVEINEP---IAFNME 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+  H  G H   N L      ++     +   KALS F   E    R          
Sbjct: 264 QEELALH--GTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVE---HRLEKVATVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++   
Sbjct: 319 QFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRTK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHEFFDRFGLPVADVQTGMKDAVDAAFKLAQKGETVLL 417


>gi|268591757|ref|ZP_06125978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rettgeri DSM 1131]
 gi|291312718|gb|EFE53171.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rettgeri DSM 1131]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 124/349 (35%), Gaps = 44/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++     +   +    G+          L+ +       
Sbjct: 101 READAPIVAITGSNGKSTVTSLVGEMAKAAGISVGVGGNIGTP-----ALSLLNAGHRLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A +  I+  H+  +  G+E+   AK +I+   +    
Sbjct: 156 VLELSSFQL----ETTSSLEATAATVLNISEDHMDRYPLGLEQYREAKLKIYHNAQN--- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D     +        +    SFG +    F         +     +  QGK + 
Sbjct: 209 CIVNVQD-----ILTLPANHTLDECISFGLNSGDYFF--------DTQKRVLVAQGKELL 255

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V   H  G H   N L  L +   +       ++   V     G   R+   L      
Sbjct: 256 DVNEMHLTGQHNYLNALAALALADAVDIPRPACLQ---VLKEYAGLAHRFELVLFNNGVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L + ++  N
Sbjct: 313 WINDSKATNVGSTEAALNGL-----HVDGNIYLLLGGDGKSADFSP-----LKQYIAADN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  G    AL D  P    +  +ETM+     I   L  GD+V++
Sbjct: 363 -YRLYCFGRDGKALADMAPEKSVL--TETMEQSLRQIAPQLKAGDMVLL 408


>gi|167038658|ref|YP_001666236.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320117050|ref|YP_004187209.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857492|gb|ABY95900.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930141|gb|ADV80826.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 876

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 164/497 (32%), Gaps = 68/497 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILHAV-- 61
           +   D+ +  Q   +         GI+ID +  I P     A++     G D     +  
Sbjct: 365 FDLEDIPKKGQKVFLRESANLSTGGIAIDKTDDIHPYNIEIAVRAAKAIGLDIAGIDITM 424

Query: 62  ---------QKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
                    + GA + +  +    +    S   P     +V  A+  +      ++   I
Sbjct: 425 EDIKKPLTKENGAIIEINASPGIRMHHYPSKGKP----RNVAKAIVDMLFPKGSKATIPI 480

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLARMPVDV 160
           I+ITG+ GKTT   M    L +   T     +   +I            P +      D 
Sbjct: 481 ISITGTNGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADK 540

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLE 218
           +     L  +  G IR         + VIT I+  HL       +E++A  KA + E ++
Sbjct: 541 NIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVK 600

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQC 266
           + G   LN DD     L  ++       I  F    N                ++     
Sbjct: 601 EDGYSVLNADDPMTTYLAQRAKG----KIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIV 656

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +   ++ + +     G   +  +N L  +     +   ++   K +  F+     
Sbjct: 657 IANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTH 716

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                   N G F ++ + Y  N A +K+ I    ++  +   R I V+G   +    S 
Sbjct: 717 NPGRFNLFNVGNFRVLVD-YGHNIAGIKSVIEAAQKLDAN---RLIGVIGVPGDRINSSI 772

Query: 387 SFHIDLAEVLSLYNISHVWL----------SGFHVLALKD-ALPRSIHVHYSETMDGLFL 435
              + + E+        +++           G     L+  A+   I     +T+     
Sbjct: 773 ---LKVGEICGQ-GFDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETE 828

Query: 436 FIQSSL---VDGDVVVV 449
            +++++     GD++VV
Sbjct: 829 ALRAAMYNAEAGDLIVV 845


>gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
 gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
          Length = 449

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 126/346 (36%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++     + + T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIG---YVASKVAQEVSSKEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + + ++       
Sbjct: 222 N----YHQRHLIESENLKAKTLY-FSTQQEVDGIYIKDGFIEYKGVRI-ISVED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +     +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFS---GIEHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++  +Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDEL------IPYMKNVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  +      IQ  +   DVV++
Sbjct: 373 VVFGETQEKFAKLGNSQGKYVIKATDVQDAVDKIQDVIEPNDVVLL 418


>gi|123969098|ref|YP_001009956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. AS9601]
 gi|123199208|gb|ABM70849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 476

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 149/421 (35%), Gaps = 56/421 (13%)

Query: 49  PHYDGHDFILH--AVQKGAGLVVVNTDMVASIGSLSI---------PVFGVDDV------ 91
              DG +F+    A+++   LV +N + V       +         P    D V      
Sbjct: 39  ESNDGIEFLERKTALEELDVLVSLNKEFVFEEIQPFVREIESVVVSPSIPYDHVTIVELK 98

Query: 92  ---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              +  + ++ VA  +      I ITG+ GKTT   +L+  L          G+    + 
Sbjct: 99  KKGIRVIGEINVAWEILKDTNWIGITGTNGKTTVTHLLSHILCDTGLYAPFAGNIGTPL- 157

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                ++    +D+ + EL    +     ++  V+P+I + TT    HL     +E   +
Sbjct: 158 CKYAYSKKHEKIDWVVAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFN 213

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQC 266
            K  +   LEK+     NYDD       + S + G+    S  KS   + D+ +      
Sbjct: 214 IKKSL---LEKSDFRIYNYDDKNLRNYYS-SLSRGVWITTSLDKSNFIHCDYWIDDQAYI 269

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E+     +L+  S++      G H  QN+L+ +     +         +LS +      
Sbjct: 270 VERGKKLFKLEHFSLK------GMHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLP-- 321

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R           +I++S   N  S  A IS +       EG+ I + G   +  E S+
Sbjct: 322 -HRMETIYKNNGLEIINDSKATNFDSSIAGISSI-------EGQIIIIAGGRLKGNEYSE 373

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVD 443
                    +    +  V+L G     LK AL       ++     +  L  F+   L +
Sbjct: 374 W------IKVLKKKVKCVFLFGESSKVLKMALINEGFKKNIFEFSELKELLNFVFHYLQN 427

Query: 444 G 444
            
Sbjct: 428 N 428


>gi|154494015|ref|ZP_02033335.1| hypothetical protein PARMER_03360 [Parabacteroides merdae ATCC
           43184]
 gi|154086275|gb|EDN85320.1| hypothetical protein PARMER_03360 [Parabacteroides merdae ATCC
           43184]
          Length = 476

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 132/371 (35%), Gaps = 46/371 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + + G+ GKTTT  M+   L        A +G    +    L L+      D  + E   
Sbjct: 115 LCVAGTHGKTTTSSMVAHLLKQSHVDCNAFLGGILKNYDSNLMLS---DKSDLTVIEA-- 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF----L 225
               E     H ++P++AVIT   P HL  +   E    +       +   G +     +
Sbjct: 170 ---DEFDRSFHWLKPYMAVITAADPDHLDIYGTPEAYRESFEHFTSLIRPDGCLLMKQSI 226

Query: 226 NYDDSFFELLKAKSH--ALGIKTIYSFGK---SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           N      E +K  ++  A   K + +F     + + DF     +    + + +       
Sbjct: 227 NVTPRLQEGVKFYTYTGAFDAKELSTFNFQLSTGSPDFYAENVRIGGGEIFFDFVGPDVR 286

Query: 281 MEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +  G+      +N +  + +  +     +     ++ F    G  +R+   L +   
Sbjct: 287 IPDIQLGVPVKVNIENGVAAIALAWLNGVTPEEIKHGMATF---AGPRRRFDFHLKKENI 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE----- 394
            LID+ Y  +PA +KA+I  + ++     GR++  +     +   ++ F  D A      
Sbjct: 344 VLIDD-YAHHPAELKASILSVKEL---YAGRKVTGIFQ-PHLYTRTRDFAADFAASLSLL 398

Query: 395 ----VLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
               +L +Y      + G     + DA+     R I        + L   + +     +V
Sbjct: 399 DELILLDIYPAREEPIPGVTSQIIFDAVTIADKRLIR------KEELLDVVAAEAGKFEV 452

Query: 447 VVVKSSNSCGF 457
           V++  + +   
Sbjct: 453 VLMVGAGNIEL 463


>gi|308185264|ref|YP_003929397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
 gi|308061184|gb|ADO03080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
          Length = 447

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 132/395 (33%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDSNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  I      F + +S    I+     +   + ++T
Sbjct: 105 FINDERIKEKGLTTPTLLELYGDLEEAIRLGCEYFIMEVSSHAIIQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE     K   F   +  G   +N D  ++ F  +   ++AL  +   
Sbjct: 165 NITSDHLDFHQNIENYRDTKNSFF---KDEGLKVINRDETNALFNPINTHTYALDKRAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            + +F  + +    L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NVQAFSLNPSISASLCYQQDLRDPNLKEIAL------IHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++     L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLEAIAPLLENFYGVKGRLEIVHSK------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    +  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GINDSSKVIIEKDRKKAILNALENLKDDEVLLILG 415


>gi|134298541|ref|YP_001112037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum reducens MI-1]
 gi|189082878|sp|A4J2A9|MURD_DESRM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134051241|gb|ABO49212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
           reducens MI-1]
          Length = 456

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 128/383 (33%), Gaps = 40/383 (10%)

Query: 74  MVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           M   +    +PV       +  L +L +A R  +KA I+AITG+ GKTTT  +       
Sbjct: 74  MSPGVPLTILPVVQAKKFDIPVLGELELAYRF-AKAPIVAITGTNGKTTTTTLTGQLFRD 132

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                   G+    +   +   ++    D  + E+    L      T    P +AV+  +
Sbjct: 133 AGFKTLVAGNIGLPMVSEIENYQVG---DIVVAEVSSFQL----ETTEYFAPKVAVMLNL 185

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL     +EE   AK+ IF   + +  + LNYDD     L     +     +  F +
Sbjct: 186 TPDHLDRHGSMEEYIKAKSCIFIHQKPSDYVVLNYDDLALRELAKSCPS----QVIFFSR 241

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTA 308
                  + +     +   + V  +G   EV+        G H  +N L        L  
Sbjct: 242 Q-----HIIEKGSFIQNDKIMVSGKGGPEEVIDVNALRIPGPHNLENALAATAAAYTLGL 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                   L  F        R     N      +++S   NP    AAI  L        
Sbjct: 297 SPRDIAGTLGRFTGVA---HRLEFVANINGVEYVNDSKGTNPD---AAIKALESYDAPI- 349

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHY 426
              I + G     G+       D A+ +    +  +   G H   +++A       +++ 
Sbjct: 350 ---ILIAG-----GKNKGISFNDFAKKIKE-KVRVLITLGVHGYQIEEAAREQGFTNIYP 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            E         +     G++V++
Sbjct: 401 VEDYAQAVQLARKQAKPGEIVLL 423


>gi|269978146|ref|ZP_06185096.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307701109|ref|ZP_07638134.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
 gi|269933655|gb|EEZ90239.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307614104|gb|EFN93348.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
          Length = 490

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 122/385 (31%), Gaps = 36/385 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   ++            ++A+ G+ GKTTT  ML+ AL  +    +   +    I    
Sbjct: 104 LEIWHRSQALDFCTRSKDLLAVAGAHGKTTTSAMLSKALWDVGADPS--FAIGGVILEYG 161

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T AR+       + E   S    + +      P + V+T I P HL ++   E    A  
Sbjct: 162 TGARLGRG-RAFVIEADESDGSFLNYA-----PLVEVLTNIEPDHLDHWGSREAFDQAFV 215

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQS 270
           +    +   G I    DD+    L  + H+      Y FG     A   +   +      
Sbjct: 216 DFTARIRPGGAIVACGDDAGIRRLAPRFHSGAALVSYGFGAPLPGAALVVALGEPRLGAG 275

Query: 271 WMEVQLQGKSMEVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKA--LSV 319
             EV L+                    G H   +    LG  + L   V           
Sbjct: 276 HAEVDLRVMRCHPEQLLFHDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAFCQS 335

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G G+R +     G   + D+ Y  +P  + A +     ++ +  GR +       
Sbjct: 336 LSSFTGTGRRMQFLGEIGGVRIYDD-YGHHPTEVAATLGAARDLAGN--GRLLVCF--QP 390

Query: 380 EMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            +   +++F  + A VLS          Y        G    A+ D +       +   M
Sbjct: 391 HLYSRTKTFASEFATVLSAADEVVVCGVYAARENPTDGADGDAIADLM--GEKGQFISDM 448

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
                 + +    GD+++   + S 
Sbjct: 449 YAAGDAVYNLAKPGDLLLFLGAGSI 473


>gi|90408125|ref|ZP_01216294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
 gi|90310737|gb|EAS38853.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
          Length = 446

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 148/423 (34%), Gaps = 54/423 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V    D      S   P + +++VL                 ++A+ G+
Sbjct: 67  IGNAMSRGNPCVEEILDKQMPYISG--PQWLLENVLKERW-------------VLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKT+T  ML   L          IG    + G+   L   P    F + E         
Sbjct: 112 HGKTSTASMLAWILEYANMKPGFLIGGVPENFGLSARLGETP----FFVIEADEYDCAFF 167

Query: 176 RFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V   P   V+  +   H   F  ++ I      +   +  +G IF    D   E
Sbjct: 168 DKRSKFVHYHPRTLVLNNLEFDHADIFENLDAIKKQFHHLIRTVPSSGRIFFPNQD---E 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            L A  H      +   G++ + +      K   + S  +V L  K    V    IG H 
Sbjct: 225 ALMAVKHMGCWSEVEYLGENWSIN------KIQEDGSKFDVLLNAKIEGRVDWPLIGDHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +     +    + + +AL+ F   +   +R          T+ D+ +  +P +
Sbjct: 279 INNALGAIAAARHVGVTPEISTQALASFKSIK---RRMEVKGVVNHVTVYDD-FAHHPTA 334

Query: 353 MKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +   +  L   +  GE R IAV+      M  +G   ++       V +L +   ++   
Sbjct: 335 INTTLLGLR--AKVGEARIIAVVEPRSNTMK-LGIQKEAL------VNALTSADKIYFYE 385

Query: 408 GFHVL-ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +  ++ D    +   V  S  +D L   +      GD +++  SN  GF  L   LL
Sbjct: 386 SADMQWSIADLFMEQGKKVDISTEIDTLADKLAEIARPGDHILIM-SNG-GFGNLHQKLL 443

Query: 466 EEF 468
           ++ 
Sbjct: 444 DKL 446


>gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 425

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 125/436 (28%), Gaps = 94/436 (21%)

Query: 28  NGISID-SRSIAPQEAFFAIK-GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           N I  D S+      AF   K         FI  A + G    + + D+       SI  
Sbjct: 7   NKIYTDNSKEADKNSAFVYSKQNEK-----FIEDAKKNGCKEFIKSEDLKNHCDFTSI-- 59

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                                   +I ITG+ GKTTT   +   L  +    A  G+   
Sbjct: 60  -----------------------KVIGITGTNGKTTTAAAIYSLLLDLGYKVALQGTRGF 96

Query: 146 HIGVPLTLA-----------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            I                         +    DF + E+  SH  E + +   +   + +
Sbjct: 97  FINEQRVEEYSLTTPVQLGNFAHIQKAIENSCDFFVMEVS-SHAIEQKRI-EGLNFELKI 154

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I   HL     IEE  + K   F    K     +N D                K   
Sbjct: 155 LTNITRDHLDYHKTIEEYINVKNSFFNDDSKK---LINKD--------EIKAKFNPKNCL 203

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LT 307
           ++G    + ++++ +    +   + +Q   K        +G     N+   +  V +   
Sbjct: 204 TYGLDSPSTYKVQAY-SFKDGMHVALQNFEKVESFTSMMMGLFNVYNLTAAIAAVHMTTN 262

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++   +A+  F    GR +             I   +   P  MK  +          
Sbjct: 263 KSLNEICEAVENFAGVSGRMETLSLN------PYIIVDFAHTPDGMKEVLQSFGHKD--- 313

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
               I V G     G+  ++    + +V   +   H+ ++  +                 
Sbjct: 314 ---IIVVFGA---GGDRDKAKRPIMGKVADTF-AKHIIVTSDNPR--------------F 352

Query: 428 ETMDGLFLFIQSSLVD 443
           E  D +   I   + D
Sbjct: 353 EDPDLIIEDILEGIND 368


>gi|271502147|ref|YP_003335173.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
 gi|270345702|gb|ACZ78467.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
          Length = 460

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 129/371 (34%), Gaps = 38/371 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCGYK---PGFVIGGVPGNFTVSARLGDSPFFVVEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I +  
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIVPS 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
            D   + + +       + +      +   ++ +K    ++ S  +V L  + + EV  +
Sbjct: 222 HDLHLKQVMSMGCWSEQELV-----GEEGVWKAKKV--TTDASVFQVYLDDQLVGEVTWN 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R          ++ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINAR---RRLELRGTAHGVSVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-MGHCKNELAPSLGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V  + DA  +    ++S  +D L   +      GD ++V  SN  GF
Sbjct: 383 GVFLFQPQHIPWQVSEVADACVQ--PAYWSADIDTLVEMVSKVAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLEEF 468
             + N LL+  
Sbjct: 439 GNIHNKLLDAL 449


>gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 444

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 125/370 (33%), Gaps = 53/370 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           II +TG+ GKTT   ++T  L++       +G+    +   +         +  + EL  
Sbjct: 113 IIGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTPLTREILTLDFQ---EIAVLELSS 169

Query: 170 SHLG--EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             L   + + L        AV+  I P HL  +  +E  A +K +I + L+K+G +F+  
Sbjct: 170 YQLDTFQQQVL------DEAVVLNITPDHLERYETMENYAKSKFQIGKCLKKSGKLFV-- 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHH 286
                     +   L      ++G   +            E     E+ L+ +  E    
Sbjct: 222 ----ERKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEGMQQFELPLEWQGKEN--- 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
               H  +N+L    I +         ++AL  F        R    L +      D+S 
Sbjct: 275 ----HDLENLLAAYAICARRGIKPQQFLQALKTFQKPS---HRVEFVLEKNGIHFYDDSK 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  ++  A+  ++        R + ++    + G    ++           ++  V+ 
Sbjct: 328 GTNIDAVMRAVQSIN--------RPVFLIAGGVDKGASYVAWLNVF-----KGHVKKVYA 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     ++  L   I V     +D           +GD V++    +S           
Sbjct: 375 IGQAANKIQKELSLHIRVQIEANLDDAVKQAYQDAKEGDAVLLSPGCASFDMFKDYIHRG 434

Query: 455 CGFYRLINLL 464
             F RL+ LL
Sbjct: 435 EEFKRLVKLL 444


>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
 gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
          Length = 454

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 94/327 (28%), Gaps = 27/327 (8%)

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +   L      +   G+    +     +       ++ + EL    L      T   R
Sbjct: 127 SWVGHMLEVAGVPHRVAGNIGVPL---CDVVEAIDSEEWLVAELSSFQLQG----TLRFR 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI  I  I PAHL    G+E  A+AK  +F          LN        L A   A  
Sbjct: 180 PHIGAILNIYPAHLDYHGGLEAYAAAKKNMFVNQGPEDYAVLNGGRKDEHQLMAGVRARP 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG  +         +      W   + +           G H  +N L    + 
Sbjct: 240 AR----FGGPRRPGVPGMAVEGDRVLWWDGFRAEPVCAVGDVALPGEHNLENFLAAGTLA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  A +     +   F   E    R          T  ++S   NP   +AA   L   
Sbjct: 296 VLAGASLSAVATSGRTFRGVE---HRMEFVRQWQGVTFYNDSKATNP---EAAFRALGAF 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
             +     +  +    + G+     +  L  +L    +  V   G     +        I
Sbjct: 350 PKN-----VIWIAGGLDRGDD----YRRLLPLLQEGRVKTVLTMGQSGPRIAALAQEVGI 400

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V     ++       S    GDVV++
Sbjct: 401 PVRRVADVEEAVRIAVSLARGGDVVLL 427


>gi|170755247|ref|YP_001783157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B1 str. Okra]
 gi|226711900|sp|B1IGJ0|MURD_CLOBK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169120459|gb|ACA44295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum B1 str. Okra]
          Length = 458

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKREGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNGMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 INLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     ++ A  + I     E       +M+            GD++
Sbjct: 377 KILILMGDTKNKIRSAFEKVISYKKCEMEIVIVNSMEEAVKVADDMAEKGDII 429


>gi|225181532|ref|ZP_03734974.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167780|gb|EEG76589.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 410

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 119/376 (31%), Gaps = 44/376 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                +I +TGS GKT+T  ML   L       A + S+         +          +
Sbjct: 4   TFARPLIGVTGSSGKTSTILMLNSILEQCGNKPAMLESWKGPASFTKLVKNNTTGSRPLL 63

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+ +  L + +    +     A +T +   HL      E     K+E F  L  +    
Sbjct: 64  AEVPVEALRQRQVKGEI--FQCAALTNLTVDHLPACGTQERYHELKSEFFNQLPPSAKAV 121

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQG----- 278
           LN DD     L       G     +F     NA    +  +  +  S  E+ +       
Sbjct: 122 LNADDPRSLTLAGD----GGLDTITFALHYPNAMIVAKNIRTKNFSSVFELSVNTDIPTF 177

Query: 279 -------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                  ++ +V    +G     N L+   +  +L  D+++  +AL  F       +   
Sbjct: 178 SNRVISPQTTKVHLPMLGEQNIYNALLAATLALLLDVDLESIARALGRFPGIRRNMEIIS 237

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFH 389
                    L+ +    NPA+++AA++    +      RR  VL  +   G  +  +   
Sbjct: 238 V-----DKALVLDDGARNPAAIRAALAGAKLL----GKRRTLVLHGIYGKGGQTINRCNA 288

Query: 390 IDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHVHYSETMDGLFL 435
            +LA  L     S + +                     L +         Y   +     
Sbjct: 289 RELAHWLQQSPGSQLIVTRSMYHTKHKYQVRVSEEKTFLTELKESKTEAAYFPDLPDAVE 348

Query: 436 FIQSSLVDGDVVVVKS 451
            I S   + D++++  
Sbjct: 349 SILSHACEEDLILLLG 364


>gi|71734389|ref|YP_276232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|118595674|sp|Q48EF6|MURD_PSE14 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71554942|gb|AAZ34153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322452|gb|EFW78545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330079|gb|EFW86066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330874996|gb|EGH09145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 448

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 126/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF      + + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLLEENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S +    +AE
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-ALRAPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|71902948|ref|YP_279751.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS6180]
 gi|109892746|sp|Q48V60|MURC_STRPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71802043|gb|AAX71396.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS6180]
          Length = 442

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 124/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  +  DF      + +  S  +V+ QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D       L  F   +      R        T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDTALVADHLKTFSGVK-----RRFTEKIINDTIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVKVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|325102886|ref|YP_004272540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
 gi|324971734|gb|ADY50718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
          Length = 448

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 36/360 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+++  A R   KA  I ITGS GKTTT  +    L          G+        +   
Sbjct: 93  LSEIEFAGRYN-KAKTICITGSNGKTTTTLLTYHILKKAGLNVGLAGNIGYSFAKQV--- 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
               + D+ + EL    L  +    +  +  IAV+  I P HL  ++  ++    +K  I
Sbjct: 149 -AEENFDYYVLELSSFMLDNM----YDFKADIAVLLNITPDHLDRYNYEMKNYVDSKFRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +            DD        +      +  +S          L       +  +  
Sbjct: 204 IQNQTSQDHFIYCADDPETIAALDRHQINAERHPFSITNKVENGAFLEN-----DTIYFN 258

Query: 274 VQLQGKSMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +    + + +        G H   N + +     IL    +T  +++  F        R 
Sbjct: 259 LN-NTEPLTMTIQELALQGSHNVYNSMASGISAKILELRNETVRESMGDFKNVA---HRL 314

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    T I++S   N  S   A+  +S          + +LG + +  + S     
Sbjct: 315 EFVAKISGITFINDSKATNVNSTWYALESMSS-------DVVLILGGVDKGNDYS----- 362

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            +   L    +S +   G    A+ DA    + +   +++              G  V++
Sbjct: 363 -MLRNLVKEKVSSIVCLGLDNKAIHDAFEDDVEIIVNTKSAAEAVEVAYHLAKKGSTVLL 421


>gi|89256891|ref|YP_514253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115315270|ref|YP_763993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503068|ref|YP_001429133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010673|ref|ZP_02275604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368162|ref|ZP_04984182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953242|ref|ZP_06557863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313535|ref|ZP_06804126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|122063246|sp|Q2A1Z9|MURD_FRATH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122324734|sp|Q0BKM8|MURD_FRATO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224761|sp|A7NDX4|MURD_FRATF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89144722|emb|CAJ80053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130169|gb|ABI83356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253972|gb|EBA53066.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156253671|gb|ABU62177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 416

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 125/353 (35%), Gaps = 53/353 (15%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQI----NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    +  +                     G     ++Q+ +       + +   +
Sbjct: 197 --SNDFFVYDVHN---------------------GIKYAGEYQIIRGAIYRNSTKLLDIV 233

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K         G H  +N+++ L I+  L  D++ AI ++  F   +G   R +     
Sbjct: 234 ETK-------LFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKIVKKV 283

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S   N  +  AA++ ++          I +LG + + G+ S      + + L
Sbjct: 284 NGTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----MIKSL 333

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 334 DKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|154249900|ref|YP_001410725.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153836|gb|ABS61068.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 451

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 125/368 (33%), Gaps = 43/368 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++    R+       A+TG+ GK+TT  ML  +L  +           ++         
Sbjct: 95  MRIDHFRRILEPFRGFAVTGTDGKSTTTSMLANSLIDLGADPYVFLGALHNKLEHGNYRH 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D    ++EL  S  G       L RP   +IT I   H+ N+  +E   S+   + +
Sbjct: 155 GKSD--IAVYELDESQPGY-----ELFRPEFLIITNIREDHVENYQSLEHYYSSFETLIK 207

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               +  +    D+               K   +FG     DF+L + KQ      + + 
Sbjct: 208 N---SKFVVTFADEK------------KFKGNVTFGVYSG-DFKLVERKQEGFYQTVTIF 251

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 +      GYH A N L  + ++S +  ++D  + +   F      G+R+  + +
Sbjct: 252 TPYGERKFFLPVPGYHNALNALAVISLLSSIGYNIDKVLDS---FEDFRLPGRRFNVSYD 308

Query: 336 QGFFTL-IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DL 392
                + I + Y      ++  +    ++ P    R+I ++          +       +
Sbjct: 309 NPSRKITIVDDYAHTADEIEVLLKTSREVYPE---RKIVLIFQPHRYTRFKREAERFKRI 365

Query: 393 AEVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +      I+ ++ +     G     +   + ++I V   E +  +       L D  V 
Sbjct: 366 LQSADEIYITEIYGAFETKNGVTAKNIVSEIAKAIFVEKIEDLKNI------ELQDNAVY 419

Query: 448 VVKSSNSC 455
           +   + + 
Sbjct: 420 MFVGAGNI 427


>gi|239623443|ref|ZP_04666474.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521474|gb|EEQ61340.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 452

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 125/371 (33%), Gaps = 36/371 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  VDD    +      A   S   + AITG+ GKTTT  +    L +  +    +G+  
Sbjct: 85  VAVVDDAKIPILGEIELAYQCSLGRLAAITGTNGKTTTTALTGEILKAKYEETFVVGNIG 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                   +  M  D    + E+    L  I        P ++ I  I P HL+    +E
Sbjct: 145 APYTSK--VLEMTEDSVT-VAEVSSFQLETI----MDFHPDVSAILNITPDHLNRHGTME 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL---R 261
                K  I     +   + LNYDD        +   L  + I+   + K +D       
Sbjct: 198 NYIRIKECITLNQTEKDAVVLNYDDPVLREF-GQDPELKPRVIWFSSREKLSDGFCMSGD 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
               C +     + +  + M+     +G H  +N++    I   +   +    + +  F+
Sbjct: 257 NIVYCQKGRE-TILVNVRDMK----LLGRHNYENVMAAAAIGLEMGVALADIGRVVESFN 311

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P E    R      +      ++S   NP    AAI  L  +     G  + + G     
Sbjct: 312 PVE---HRIEFVRERTGVRYYNDSKGTNPD---AAIQALRAMP----GPTLLIAG----- 356

Query: 382 GELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQ 438
           G    S + D +AE      + ++ L G     + +   +       Y+E M        
Sbjct: 357 GYDKNSEYDDWVAEF--EGKVRYLVLIGQTRDKIAECAKKHGFTEIMYAEDMQEAVQVCA 414

Query: 439 SSLVDGDVVVV 449
                GD V++
Sbjct: 415 VYADIGDYVLL 425


>gi|320175807|gb|EFW50891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 457

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +         AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADTANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTSQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 809

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 141/436 (32%), Gaps = 53/436 (12%)

Query: 47  KGPH-YDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           KG   + GHD   + H        VVV +  +A      +        L  L++  + ++
Sbjct: 48  KGARCFSGHDSSHVPH------DAVVVYSSSIAPDNVEYLTAIQRSSRL--LHRAELLSQ 99

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L      I ++GS GKT T  ++       +K      SY         L          
Sbjct: 100 LMEGYESILVSGSHGKTGTSSLIRAIFQEAQKDP----SYAIGGLAANCLNGYSGSSKIF 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + E   S      +      PH  VIT I   HL+     ++ +     +    +     
Sbjct: 156 VAEADESDGSLKHYT-----PHAVVITNIDNEHLNNYAGNLDNLVQVIQDFSRKVTDLNK 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +F N D    +         G     S+G S      +  + Q + QS       G+  +
Sbjct: 211 VFYNGDCPILK---------GNVQGISYGYSPECQLHIVSYNQKAWQSHFSFTFLGQEYQ 261

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G H A N     G+      D++   KAL  F     R +R     N     L
Sbjct: 262 DIELNLPGQHNAANAAAACGVALTFGIDINIIRKALKKFSGVHRRLER----KNISESFL 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLY 399
             E Y  +P  +      L  +      RR+  +        L +         +     
Sbjct: 318 FLEDYAHHPVEVA---HTLRSVRDAVGLRRVIAIFQPHRFSRLEECLQTFPKAFQEADEV 374

Query: 400 NISHVWLSGFHVLA------LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++ V+ +G           L + + +S +VH  Y    D +  ++++ +   DV V   
Sbjct: 375 ILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPHGD-IVDYLRNYIRIHDVCV--- 430

Query: 452 SNSCG-FYRLINLLLE 466
           S   G  Y +   L +
Sbjct: 431 SLGAGNIYTIGEALKD 446


>gi|325144437|gb|EGC66737.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M01-240013]
          Length = 458

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 128/375 (34%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    + GV   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIVCNG---RQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +   + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    ++  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWDVAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 445 -GFGGIHGKLLEALR 458


>gi|297380651|gb|ADI35538.1| UDP-N-acetylmuramyl-tripeptide synthetase [Helicobacter pylori
           v225d]
          Length = 447

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 132/397 (33%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + E+ S Y    +  S         + +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEIASYYAHKIILTSDNPRSENEEYIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|317179671|dbj|BAJ57459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F30]
          Length = 447

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 132/397 (33%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++T    L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLALETIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    V  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|167765846|ref|ZP_02437899.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|167712563|gb|EDS23142.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|291559201|emb|CBL38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SSC/2]
          Length = 454

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 119/354 (33%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SK  I AITG+ GKTTT  +    +    ++   +G+         ++A    +  
Sbjct: 103 AYQASKGRIAAITGTNGKTTTTALTGEIMKGYYESSFVVGNIGIPYT---SVALDTKEDS 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               E+    L  I       +P +  +  I P HL     +E  A  K  I +   K  
Sbjct: 160 VTTAEISSFQLETI----VDFKPDVCAVLNITPDHLDRHGTVEVYAQTKESIGKNQTKDQ 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LNY+D     +  +++     T+  F           K     E     ++  GK  
Sbjct: 216 VMVLNYEDDTTRAMADRANG----TVLFFSLHHK-----IKEGVSMEGDAFIIEENGKKQ 266

Query: 282 EVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V      + +G H  +N+L  + +   +   V    + +  F   E    R        
Sbjct: 267 IVCTLDDVNLLGDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVE---HRIEYVDTVK 323

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +    I  +++ +    G            G   +S + +  E   
Sbjct: 324 GVAYYNDSKGTNPDAAIKGIKAMNRPTWLIGG------------GYDKKSTYDEWIEAFD 371

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + L G     + D         + + ++M+    +I     DG+ V++
Sbjct: 372 G-KVKELILMGVTAPKIADCAKTHGFDKIKFVDSMEEAVSYIAGKAQDGEAVLL 424


>gi|330888575|gb|EGH21236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 448

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 125/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA  IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPGIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E   +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHPCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +  AAI  L       +G+ + + G   +  + S +    +AE
Sbjct: 315 EHDGVHYYNDSKATNVGAALAAIEGLGS---DIDGKLVLIAGGDGKGADFS-ALRAPVAE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +  AL  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQALGDAVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC
           3537]
          Length = 469

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 159/465 (34%), Gaps = 69/465 (14%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            D+R + P   F  +KG +++   ++ +AV  G   +V    +      + IP + V + 
Sbjct: 3   YDTRQVKPNTLFV-VKG-NFNP-KYLENAV--GITGIVTTKPL-----DIDIPQWIVSNT 52

Query: 92  LGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             AL+ L+     R + K  I AITG+ GKTTT       L    +    + S  + I  
Sbjct: 53  QQALSLLSAEFFDRPQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALFSTVDRITG 112

Query: 150 PLTL------------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           P                      R  VD       + +S    ++   + +   +     
Sbjct: 113 PQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLHFDVGTFLN 172

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTI 247
           I+P H+        E+  + K  +   L+ + TI +N +    + +   AK +    K++
Sbjct: 173 ISPDHIGPNEHPTFEDYLAHKLML---LDHSDTIVINDETDHHDEIFSHAKQNHEAGKSL 229

Query: 248 YSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSME-------VVHHGIGYHMAQNMLM 298
           Y++  ++    D+          +S   V  Q K  +          +  G     N L 
Sbjct: 230 YTYSSNRQNQGDYVFISNDSAIHESHFTVSEQHKVEQLSEIIGHYRLNIPGDFNESNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L I     A     ++           G+     +       +D  Y  N ASM A +S
Sbjct: 290 ALMIAGFAGAKHQDMVQG---LDEVFIPGRMLSMPIPSHGVAFVD--YAHNYASMHALLS 344

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
                  +  G+ I V+G     G    S   D  +V+       V+L+           
Sbjct: 345 FAQS--KYPTGKVIVVVGSP---GNKGVSRRADFGKVIGEL-ADVVFLTADDPQYEDPAD 398

Query: 414 LKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + + +   I+     VH+            +S  + D+V+V  K 
Sbjct: 399 IANEIACHINNDHVVVHFEMDRIKAIHAAIASAGEQDIVIVAGKG 443


>gi|323489497|ref|ZP_08094724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
 gi|323396628|gb|EGA89447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
          Length = 454

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 124/367 (33%), Gaps = 69/367 (18%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L S+A  I ITGS GKTTT  +L   L+   K     G+      V   +A      +
Sbjct: 106 AYLISEAPFIGITGSNGKTTTTTLLFHMLNQDNKNPLIAGNIGT---VASGVAEKAKPEN 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   RP IA+IT I  AHL     IE+  ++K ++        
Sbjct: 163 VIVTELSSFQLKG----TEAFRPTIAIITNIYEAHLDYHGSIEDYRASKMKLTSNQTAED 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N D            A  +      G+++ +          +++++  V  QG+ +
Sbjct: 219 YFIYNADQPLLVEHAKNCKAKLVPFTLK-GRTEES--------VSADENY--VYWQGEEL 267

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N+L       I     +T I+ L+ F   +    R +        
Sbjct: 268 IERSKIMLAGQHNLENILAATAATLIQGGTKETIIRVLTSFTGVK---HRSQFIKEWQGR 324

Query: 340 TLIDESYNANPASMKAAISV-----------------LSQISPHGEGRRIAVLGDMCEMG 382
              ++S   N  + K+A+                   L +I P  +  ++ V       G
Sbjct: 325 KFYNDSKATNALATKSALEAFPENIILLAGGLERNHSLDEIRPFMDRVKVLVTF-----G 379

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +Q F            +  +  +G    A++ A+  S                     
Sbjct: 380 ETAQRF----TTFAEESGVKTIIQAGKMDDAVEKAIQAS--------------------A 415

Query: 443 DGDVVVV 449
           DGD +++
Sbjct: 416 DGDTILL 422


>gi|304314679|ref|YP_003849826.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588138|gb|ADL58513.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1002

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 118/392 (30%), Gaps = 66/392 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDF 162
               ++ + G+ GKTTT  M+   LSS  +T +      S      V L +     + D 
Sbjct: 114 IGIPMVGVAGTDGKTTTTNMIDHILSSRYRTVSFSSIQDSLVIEGLVELVVNGDVSNRDM 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +FEL     G IR +   +     V+T + P H+  F   +E       I   +   G 
Sbjct: 174 AVFELP---HGTIR-MADGLEIVAGVVTNLTPDHMDEFRDYDEYIERNFSIKNLIAPEGV 229

Query: 223 IFLNYDDSFFELL------KAKSHALGIKTIY-----SFGKSKNADFQLRKWKQCS-EQS 270
           + L  DD     L      K+  + LG +        +F  S               E S
Sbjct: 230 LVLCGDDPVIAGLLDDLEVKSVVYGLGNERKVEFMDRTFSGSAEPQVSATDIDLMGLEGS 289

Query: 271 WME-------------------------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                                       + +   +  +     G    +N L  + +  +
Sbjct: 290 EFTLKVSEIPTALCSMCGSLNCGEHDGVIHIGPLTERIKLRVPGLFNVENALAAITVALV 349

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D+     AL  F   +G   R+          +  ++   NP SM+     +     
Sbjct: 350 LGFDIRDIKNALEEFRGIKG---RFEFIDQVDGVPVYMDA-AHNPESMEKLFEGI----- 400

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---------HVLALKD 416
             +GR I  L +   +    +     + ++L       + +SG             +  +
Sbjct: 401 EFKGRLIISLDNPDTLTVRDK---YRIGQILGER-ADVLIVSGKNETTGKIDMEAASEVE 456

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                     +E++             GD V+
Sbjct: 457 GGAGRDKTIKTESVYDSIRRALEIAEKGDTVL 488



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 130/429 (30%), Gaps = 91/429 (21%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--ACIGS 142
           V GV+DVL              +  ++ +TG+ GKTTT  +L   + +  KT     +  
Sbjct: 601 VIGVEDVL---------NMCPVEKPVVGVTGTNGKTTTTGILKSIIRAAGKTVPEHHLSI 651

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMS-HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             N   VP   AR+P DV   + E+G     GEIR    L    + VIT I+  HLS   
Sbjct: 652 QGNTELVPALQARLPGDV--AVVEIGTFGRRGEIRQSALLSGVSVGVITNISRDHLSGGR 709

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--------- 252
              +    K EI +  E    I LN DD            L  +    +G          
Sbjct: 710 RFSDYIECKREIIDTAE---VIVLNADDPIVASFAE---GLREERAVLYGIQSMESAPVM 763

Query: 253 --------------------SKNADFQL---------RKWKQCSEQSWMEVQLQGKSMEV 283
                                   D+Q                +     ++ +  +   V
Sbjct: 764 PEGRECPKCGNNLKYTRRTMGHLGDYQCVCGYRRPQPEVMALEASADGFKLVIGSEMRNV 823

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L        L  D+D  ++ +  F    GR ++            + 
Sbjct: 824 KLRTPGIFNVYNALAAAAAAWSLGVDMDDIVRGIESFSGVRGRFQKLM------DSPRVI 877

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  NPA ++A +  L        GR I V     E G       +++A +L   +   
Sbjct: 878 LDYAHNPAGVRAVMQELKGTD----GRLIVVNTVASESGIDGD---LEIASLLK--DADT 928

Query: 404 VWLSGFHVLALKDALPRSIHVHYSET----------------MDGLFLFIQSSLVDGDVV 447
           V  + +        L +   V + E+                ++             D V
Sbjct: 929 VIPASYAARRASSILSK--RVVHIESSRKRAGAGTLGASREQVEEAVSKALEIAEPDDTV 986

Query: 448 VVKSSNSCG 456
           ++       
Sbjct: 987 LIIGEGGFR 995


>gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK160]
          Length = 481

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 170/484 (35%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------------VPLTLARMPVDVDFGIFE 166
                 LS      A + + N  +                  + +    +  D    I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  +   ++ +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLL---MDHSRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +  ++           ++  +        ++      +  GK +   
Sbjct: 241 VNSGMDHFQIVKEQVASM-----------EHDFYGAGSSNTITDSQAFSFEAAGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG+   +N     L  L +     A ++   K ++          R      +   
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRL----GASLEDIKKGIATTRVPG----RMEVLTQKNGA 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 342 KIFVD-YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTEREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|317496836|ref|ZP_07955166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895848|gb|EFV18000.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 454

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 119/354 (33%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   SK  I AITG+ GKTTT  +    +    ++   +G+         ++A    +  
Sbjct: 103 AYQASKGRIAAITGTNGKTTTTALTGEIMKGYYESSFVVGNIGIPYT---SVALDTKEDS 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               E+    L  I       +P +  +  I P HL     +E  A  K  I +   K  
Sbjct: 160 VTTAEISSFQLETI----VDFKPDVCAVLNITPDHLDRHGTVEVYAQTKESIGKNQTKDQ 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LNY+D     +  +++     T+  F           K     E     ++  GK  
Sbjct: 216 VMVLNYEDDTTRAMADRANG----TVLFFSLHHK-----IKEGVSMEGDAFIIEENGKKQ 266

Query: 282 EVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V      + +G H  +N+L  + +   +   V    + +  F   E    R        
Sbjct: 267 IVCTLDDVNLLGDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVE---HRIEYVDTVK 323

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +    I  +++ +    G            G   +S + +  E   
Sbjct: 324 GVAYYNDSKGTNPDAAIKGIKAMNRPTWLIGG------------GYDKKSTYDEWIEAFD 371

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + L G     + D         + + ++M+    +I     DG+ V++
Sbjct: 372 G-KVKELILMGVTAPKIADCAKTHGFDKIKFVDSMEEAVSYIAGKAQDGEAVLL 424


>gi|291529269|emb|CBK94855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale M104/1]
          Length = 453

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 34/344 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIAITG+ GKTTT  +    + +  K    +G+        +T +         + E+  
Sbjct: 111 IIAITGTNGKTTTTALTGEIMKNYFKDVRVVGNIGIPYTSMVTGST---GETVTVAEISS 167

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I       +PH++ I  I P HL+    +E    AK +I +         LNY+D
Sbjct: 168 FQLETIDTF----KPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYCVLNYED 223

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNAD-FQLR-KWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  A+  A   K I+   +S+ ++ F L       +     +  +         + 
Sbjct: 224 EVLRNFAAECPA---KVIFFSSRSELSEGFYLDGDIIIYAHDGVRDKVIDVNE----LNL 276

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  +N++    +       +D  ++ L  F   E    R      +      ++S  
Sbjct: 277 LGKHNFENVMAACAMSISFGVPMDKIVEVLKKFKAVE---HRIEYVTEKRGVRFYNDSKG 333

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NP    AAI  +  ++     R   ++G     G   QS + +  E      +  + L 
Sbjct: 334 TNPD---AAIQGIRAMN-----RPTLLIGG----GYDKQSEYDEWIEAFDG-KVKELVLI 380

Query: 408 GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     +++   R   ++    +T +    +     V GD V++
Sbjct: 381 GQTADKIEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 424


>gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
 gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
          Length = 516

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 150/471 (31%), Gaps = 59/471 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V          +L +
Sbjct: 32  QHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSYQNGATALIV 89

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142
                     AL   A      +    I ITG+ GKT+T      AL+       A I +
Sbjct: 90  TNIQRA---MALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 146

Query: 143 YNN----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N            +  P +L      R  VD       + +S    +    + +   I 
Sbjct: 147 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDRVYSLHFGIG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGI 244
           V   I+  H+              K ++   L  +    LN   D F E+ +A   +   
Sbjct: 207 VFLNISSDHVGQNEHPDFANYLFCKEQL---LLNSSVCVLNTQMDHFEEVYQAAKVSTAP 263

Query: 245 KTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKS---------MEVVHHGIGYHMAQ 294
             IY FG+ S + D  L    Q +  +    QL G S          E      G +   
Sbjct: 264 DKIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVG 323

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N        +I      T  +A    H       R      Q   T+  + Y  + AS+K
Sbjct: 324 NATAAAICAAIGGVKKKTIQEAFGQVHIAG----RMEVIRTQEHGTVYVD-YAHDYASVK 378

Query: 355 AAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
             ++ L  Q       +   VLG     G    S   DL + L+   ++ V L+      
Sbjct: 379 RLLAFLKGQQHQGEPSQITVVLGAP---GNKGVSRRPDLGKALAEERVNRVILTTDDPAF 435

Query: 409 FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               A+   +   I       V Y             +   GD+VV+  K 
Sbjct: 436 EDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKG 486


>gi|208779767|ref|ZP_03247111.1| cyanophycin synthetase [Francisella novicida FTG]
 gi|208744222|gb|EDZ90522.1| cyanophycin synthetase [Francisella novicida FTG]
          Length = 940

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    GR+I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGRKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|207744339|ref|YP_002260731.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-me
           so-diaminopimelate ligase protein [Ralstonia
           solanacearum IPO1609]
 gi|206595744|emb|CAQ62671.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase protein [Ralstonia solanacearum IPO1609]
          Length = 461

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 128/379 (33%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+      DF + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWILQDAGYD---PGFLVGGVPRNFGLSARLTASDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRAVPGQGRVL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + + A+        +  FG    A + +       +    +V L G+    V
Sbjct: 219 VNGREESLKRVLARG---CWSEVELFGAEDGAGWAIANL---GDDDSFDVVLDGQVQGRV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 RWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGVTVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 330 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 379

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 380 GADQVFAYGAASGRDVLGWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLVM-S 438

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 439 NG-GFGGVHQKLLDALGER 456


>gi|94264633|ref|ZP_01288416.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93454928|gb|EAT05169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 126/442 (28%), Gaps = 81/442 (18%)

Query: 52  DGHD---FILHAVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           DGH    F   AV        V  D+          +P+       G L           
Sbjct: 70  DGHSPELFA--AVDAIVVSPGVPLDIPALKEAARAGVPII------GELALAPAYLH--- 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TG+ GK+T   ++   L +        G+    +         P + D+ + E
Sbjct: 119 -TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGGNLGVPLAQY---LAGPQEADWVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP I V+  I+P HL  +   +  A++K  +F     T    LN
Sbjct: 175 VSSFQLD----TAGAFRPQIGVLLNISPDHLDRYPDYQAYAASKWRLFAHQRATDWAVLN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK------------QCSEQSWMEV 274
             D     L   +  +  +    F      + Q                      + + V
Sbjct: 231 GADPEIARLAVAAPPVARR--LDFNCQPQPEGQATAIDDKITITGGAWSASTPAGARLLV 288

Query: 275 QL----------QGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILT 307
            +           G+ ++      G                     QN    +    +  
Sbjct: 289 NVYSLLKQPVTGPGERLQWSTPAAGADPIPPEVYEPGPELAVEPNLQNAQAAILAARLAG 348

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                 +  L  F        R     +       D+S   N  ++ +A+  L+Q     
Sbjct: 349 CSSSAVVGGLRAFKSLP---HRLALVASIAGVDYYDDSKATNIGAVVSALQGLAQ----- 400

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
               I + G + + G+        L   +    +  V L G     +  AL  S+ +  +
Sbjct: 401 --PVILIAGGLDKGGDY------KLLLPVLKEKVRAVVLIGSARARMAAALEGSVPLTQA 452

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           E +             G+ V++
Sbjct: 453 EDLPAAVAKAAELAAPGEAVLL 474


>gi|289677704|ref|ZP_06498594.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 172

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P +AV+T I   H++ +     ++     E    L   G   +  DD     +     
Sbjct: 5   LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREIL---- 60

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMT 299
            L  +   ++G S++AD +    +Q    ++  V  + +  ++V  +  G H   N L T
Sbjct: 61  PLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLAT 120

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           + I +      +  ++ LS F     R + Y      G   ++ + Y  +P
Sbjct: 121 IAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHP 171


>gi|209693951|ref|YP_002261879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Aliivibrio salmonicida LFI1238]
 gi|208007902|emb|CAQ78032.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Aliivibrio salmonicida LFI1238]
          Length = 453

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 148/411 (36%), Gaps = 35/411 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDKNLKYTSGPQWLQEFLLQDRWVLAVAGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + G    L     +  F + E            +  V  RP 
Sbjct: 124 VLEECGYKPGFLVGGVLGNFGESARLG----ESMFFVVEADEYDSAFFDKRSKFVHYRPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +  +G IF    D     +  +     I+
Sbjct: 180 TLVLNNLEFDHADIFDDLAAIQRQFHHLIRTVPSSGRIFAPKQDKPLAEVLEQGCWSEIE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
                   +  +++  K K+  + S  +V    +++ +V  + +G H   N LM +    
Sbjct: 240 F-----TGEEGEWKASKLKK--DGSQFDVYFNDENVGQVNWNLVGDHNVSNALMVVASAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A +AL  F   +   +R          T+ D+ +  +P ++   +S L   +
Sbjct: 293 HVGVTPDLACEALGSFINTK---RRLEFKGEVNGVTVYDD-FAHHPTAIDLTLSGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             G+ + IAVL    E    +     H D LA  L   +  +++       ++ D   + 
Sbjct: 347 KVGDNKIIAVL----EPRSSTMKLGVHKDTLAGSLHAADSVYLFQPDNISWSVDDVAKQC 402

Query: 422 IHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
           +   Y+   ++     I +   +GD ++V  SN  GF     +L++ L ++
Sbjct: 403 VQPAYTHHEINAFVDMIVAEAKEGDQILVM-SNG-GFEGIHGKLLSALEQK 451


>gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
 gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
          Length = 440

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 136/430 (31%), Gaps = 61/430 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG- 87
           I  DS  +  +    ++    YD GH      +++     +V    +       +P    
Sbjct: 28  ILTDSNKVNEKSELESLGIEVYDEGH---PDCLKEKKYAFIVKNPGI----PYRVPFVHY 80

Query: 88  -VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYN 144
            V+       ++ VA R        A+TG+ GKTT   +L   L+  KK      IG+  
Sbjct: 81  FVEQNAKIYTEIEVAYRYAKNFDYAAVTGTDGKTTVTTLLFEMLNRQKKSLVAGNIGTPL 140

Query: 145 NHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             + +  T      D ++ +  EL    L  I       RPH++ +T +AP HL     +
Sbjct: 141 CELALEYT------DTNYNVALELSNFQLLGIETF----RPHVSTVTNLAPDHLDYMDSL 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK 262
           E    +K  I+E          N DD                 +  F  K K+ D     
Sbjct: 191 EAYFESKMRIYENTNADDYFIRNVDDENVVKYAQNIPC----HVIDFSLKRKDVDLYKDD 246

Query: 263 -WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +    +    ++             +G     N +M   +  ++   +    + +  F 
Sbjct: 247 QYAYYKDTQLFKLS--------DLKIVGEFNCGNAMMASCMAYLMGVSLFNIQEVIREFS 298

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             E    R             ++S   N  +  A +S   +         I + G     
Sbjct: 299 GVE---HRIEYVDTIDNVRFYNDSKATNTHAACAGLSAFEK-------NVILLCG----- 343

Query: 382 GELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
               +  HI   + L  Y+  +      G      KD     + V   ETM   F     
Sbjct: 344 ---GKDKHISF-DDLKQYDAVVKKCISFGQTKDKFKDIFSNQVSV---ETMRDAFEKAVL 396

Query: 440 SLVDGDVVVV 449
               GD+V++
Sbjct: 397 FAKPGDIVLL 406


>gi|83949453|ref|ZP_00958186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
 gi|83837352|gb|EAP76648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
          Length = 466

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 116/374 (31%), Gaps = 41/374 (10%)

Query: 86  FGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD+ +G   +   A       +   ++A+TGS GK+TT  ++   LS   +     G+
Sbjct: 95  VPVDNDIGLFFRSFAAQGFDEFDTPPRVVAVTGSNGKSTTSALIHHVLSEAGRASQLAGN 154

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +         P D    + EL          L   + P +AV T ++P HL    G
Sbjct: 155 IGRGVLDIDP----PEDGGVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHGG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLR 261
           +    +AK  +F          +  D++    L  + S       +              
Sbjct: 207 MGGYFAAKRRLFSEGGPD-RAVIGVDEAEGRFLANQLSVGPSDDRVIRISSGTK--LTGP 263

Query: 262 KWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            W+  + + ++    +G+      +  +    G H  QN          L          
Sbjct: 264 GWQVFARKGFLSEYRKGRQAGSIDLREIKGLPGAHNHQNACAAYAACRALGLAPRVIEAG 323

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            + F    G   R +    Q   + +++S   N  S   A+    +I     G       
Sbjct: 324 FASFG---GLPHRSQLIAEQNGVSFVNDSKATNVDSAARALMAYGRIRWICGGL------ 374

Query: 377 DMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
              E G         LA +   L N+   ++ G    A    L  +       TM+    
Sbjct: 375 -QKEGG---------LAGLAPGLANVVKAYVIGREAAAFALDLGET-ETEICTTMERAVA 423

Query: 436 FIQSSLVDGDVVVV 449
                   GD V++
Sbjct: 424 RAMEEAEPGDCVLL 437


>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
 gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
          Length = 446

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 129/387 (33%), Gaps = 55/387 (14%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +++  + +  +PV          +++  A R    + +IAITGS GK+TT  +      +
Sbjct: 78  ELMKKVRAQQVPVI---------SEIEFAYRYSKDSKVIAITGSNGKSTTTALTFNIFET 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                A +G+        +  A      D+ I E+    L +IR      +P++A++  I
Sbjct: 129 AGLHAAMVGNIGLSYARQIATA----PADYYIVEVSSFQLDDIRDF----KPNVAILLNI 180

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  +   +    ++K  I              DD         ++ L   TIYS  
Sbjct: 181 TPDHLDRYDYKMANYVASKFRIAMNQGPEDYFVYCIDDP------EITNYLKEHTIYS-- 232

Query: 252 KSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIV 303
                       +   +  +M   +V +Q     ++         G H   N +      
Sbjct: 233 ----TTIPFTIMEPLKQGGFMANEQVNIQVNDEPMIVSMYDLALKGKHNLYNSMAAGIAG 288

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +   ++L+ F   E    R            I++S   N  S+  A+  +   
Sbjct: 289 RTMDIRKEKIRESLTSFKSLE---HRMEYVATVRGVDFINDSKATNVNSLWFALESMEH- 344

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                   + V+G + +  + S          L    +  +   G     ++DAL     
Sbjct: 345 ------PVVLVMGGVDKGNDYSA------IRDLVKEKVKAIICLGVDNAPIQDALSGYTP 392

Query: 424 V-HYSETMDGLFLFIQSSLVDGDVVVV 449
           V   + +M             GDVV++
Sbjct: 393 VMIDTRSMKDAVNAAFQYAAKGDVVLL 419


>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 449

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 122/343 (35%), Gaps = 40/343 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITG+ GK+T   M+              G+    +     ++ +    D  + E+  
Sbjct: 110 IVGITGTNGKSTVTTMVGHIAKKSGLKTFIGGNLGTPL-----ISSINERFDVYVVEVSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD- 228
             L    F       H++ I  IA  HL     + E A AK +I E    +G+  +N + 
Sbjct: 165 FQLT--WFGKKEKYFHLSSILNIAQDHLDYHRDMREYALAKLKIIEL--TSGSSIINSEI 220

Query: 229 -DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++F +LL  K+     K I  F   K++ F L+       +  + +           + 
Sbjct: 221 LENFGDLLVDKTK----KQIIPFSTRKDSFFCLKDGIMRLHKLSISLD--------SLNF 268

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N  +TLG+   L         AL           R +        T I++S  
Sbjct: 269 PGIHNQENAAITLGLAQFLGI---HVHDALEKLQDYAFLDHRMQKCGQINGVTFINDSKA 325

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  ++  A+            + I +L      G+  +  +  L + +S   + H+   
Sbjct: 326 TNAHAVINALENFD------LEKVIIIL-----SGKEKREDYTPLIKKISR--VKHIIFL 372

Query: 408 GFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           G  + +L + L +    +    T+D            GD+V+ 
Sbjct: 373 GDSLKSLIERLKKKGITYDVVHTIDEALKKAVELSKAGDIVLF 415


>gi|260063714|ref|YP_003196794.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783159|gb|EAR14332.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 464

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 122/351 (34%), Gaps = 40/351 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +AT++AITGS GKTTT  +    L       A  G+  +       +AR        + E
Sbjct: 119 QATLVAITGSNGKTTTAMLTHHLLRQGGMDAALAGNIGDSF--AAMVAR--ESHPCYVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +    L  I       RPHIAVIT I P HL  +   ++   ++K  I E    +  +  
Sbjct: 175 VSSFQLDGI----LGFRPHIAVITNITPDHLDRYEYRMDRYIASKKRIAENQGPSDFLVF 230

Query: 226 NYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKS 280
           + DD      +  ++ A  +    +  +   A   L+      +   E + + +      
Sbjct: 231 DRDDPVLAREINPEAFAANLLP-LTLEEDPGAAGWLKGNDINIQLEKENTPLTMS----- 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N +    +  +L    ++  ++++ F     R +R     +     
Sbjct: 285 -NDTLALEGRHNMKNTMAAATVARLLGIRKESIRESVANFQGAPHRLERVLKIHH---VQ 340

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  +   A+  ++  +         V G   + G   +         L    
Sbjct: 341 YINDSKATNVNATFYALDSMTAPTV------WIVGG--VDKGNDYKPLMP-----LVREK 387

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           +  +   G     + +A   ++ +   ET  M             GD V++
Sbjct: 388 VKAIICLGADNSRIVEAFGNAVDLL-VETYAMSEAVKVAYKIAERGDNVLL 437


>gi|326560733|gb|EGE11101.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 46P47B1]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 123/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  D    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPADTPSLETTLNKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V+ A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLAPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L+  LK+ +  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLSWGLKEVIGSTPNQLVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N  GF     RL++ L
Sbjct: 443 NG-GFENIHGRLLDAL 457


>gi|281421051|ref|ZP_06252050.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
 gi|281404969|gb|EFB35649.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
          Length = 458

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 142/415 (34%), Gaps = 47/415 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           D I  A +     +VV T  + +       VF  ++      +  V   L      + + 
Sbjct: 61  DLIPEACKDAKTTLVVYTPAIPAEHKEL--VFFHENGFTIEKRAQVLGTLTRTHKGLCVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKT+T  M    +        A +G  + + G    L+      D+ + E       
Sbjct: 119 GTHGKTSTSTMCAHIMHQSHIDCNAFLGGISKNYGTNYILS---DKSDYVVIEA-----D 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E     H +RP ++VIT   P HL  +   E    +     E ++  G + +       +
Sbjct: 171 EFDRSFHWLRPWMSVITATDPDHLDIYGTKEAYLESFRHYTELIQPGGALII------HK 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHM 292
            L+ K H      IY + + +  DF     K  +     +     +++  V  G      
Sbjct: 225 GLEMKQHVQDGVKIYEYSQDEG-DFHAENIKIENGGITFDFISPIENVTGVELGQPVPIN 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N +  + +  +     D     +  +   +   +R+   +       + + Y  +P  
Sbjct: 284 ITNGVAAMAMAQLNGCTADELRNGMKTYGGVD---RRFDFKIKNNKLVFLSD-YAHHPKE 339

Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSL---------YNIS 402
           +  +   + ++    + R+I A+      +   ++ F+ D A  LSL         Y   
Sbjct: 340 IYQSAKSIREL---YKDRKITAIF--QPHLYTRTRDFYKDFANSLSLLDEVILCDIYPAR 394

Query: 403 HVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              + G     + D L   +    +H     + +   +++   D DV+V+  +  
Sbjct: 395 EQPIPGVTSKLIYDNLKPGVEKSMIH----KEDVLDLVKN--RDFDVLVILGAGD 443


>gi|254374520|ref|ZP_04990001.1| cyanophycin synthetase [Francisella novicida GA99-3548]
 gi|151572239|gb|EDN37893.1| cyanophycin synthetase [Francisella novicida GA99-3548]
          Length = 940

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    GR+I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGRKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|118497702|ref|YP_898752.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323674|ref|ZP_03057450.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
 gi|118423608|gb|ABK89998.1| cyanophycin synthetase [Francisella novicida U112]
 gi|194322038|gb|EDX19520.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 940

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    GR+I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGRKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 449

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 131/378 (34%), Gaps = 51/378 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A II ITG+ GKTT   ++    +  ++     G+      V   +A+     ++ + 
Sbjct: 109 SEAPIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIG---FVASKVAQEVKTDEYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT +  AHL     +E   +AK  IFE   ++  +  
Sbjct: 166 ELSSFQLLGIEH----YRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDYLIF 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N D     +  +K  A     I  F      D   + K         + + L        
Sbjct: 222 N-DKQRHLIDTSKIRA----KILYFSTQHRVDGIYVEKEYIVYNGVRL-IHLDD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   +++LS F    G   R +   N       ++
Sbjct: 270 IVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFS---GIAHRLQYIGNNKTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A+S   Q      G            G    +   +L   ++  N+  +
Sbjct: 327 SKATNTLATQFALSSFKQPVIWLCG------------GLDRGNGFDELIPYMN--NVRVM 372

Query: 405 WLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------ 457
              G      +K    +  +V  ++ +      +Q  +   DVV++  S +C        
Sbjct: 373 VTFGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQVVIEPNDVVLL--SPACASWDQYDT 430

Query: 458 -----YRLINLLLEEFPA 470
                 R I       P+
Sbjct: 431 FEQRGERFIEAFRAHLPS 448


>gi|148980586|ref|ZP_01816133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
 gi|145961169|gb|EDK26485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
          Length = 438

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 127/345 (36%), Gaps = 43/345 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +        G+        L      +D D  + E
Sbjct: 107 DKPVVAITGSNGKSTVTDLTGVLAKAAGLNVGVGGNIGIPALDLL-----ELDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF   + T    +N
Sbjct: 162 LSSFQL----ETTSNLKLAAAAFLNLSEDHMDRYQGMTDYREAKLRIFNNAQCT---IVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            +D        +++      + +FG     +F +     C       +   GK +     
Sbjct: 215 RED-------KETYPDQTMPLVTFGLDNQ-EFGVSTIGGCEW-----LVDNGKPVLTTQD 261

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L++L ++  +  D + +++A        G   R +   ++     +++
Sbjct: 262 LTLVGRHNVANALVSLALLKQVGIDYNKSLEA---LKAYNGLTHRCQVVADKREIKWVND 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L       +G    ++G + +  + S     +L  VL+      +
Sbjct: 319 SKATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELEPVLAQLERVQL 368

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G         +P        +TM  +   I   LV GD+V++
Sbjct: 369 CCFGEDAD---QFMPLHPSAQKFDTMQQIIESISPQLVAGDMVML 410


>gi|134302471|ref|YP_001122441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|158513856|sp|A4IZG9|MURD_FRATW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134050248|gb|ABO47319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 416

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 125/353 (35%), Gaps = 53/353 (15%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQI----NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    +  +                     G     ++Q+ +       + +   +
Sbjct: 197 --SNDFFVYDVHN---------------------GIKYAGEYQIIRGAIYRNSTKLLDIV 233

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K         G H  +N+++ L I+  L  D++ AI ++  F   +G   R +     
Sbjct: 234 ETK-------LFGEHNLENIIVVLNILDRLGLDINQAIASIKKF---KGLEHRCKIVKKV 283

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S   N  +  AA++ ++          I +LG + + G+ S      + + L
Sbjct: 284 NGTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----MIKSL 333

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 334 DKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|332678416|gb|AEE87545.1| Cyanophycin synthase [Francisella cf. novicida Fx1]
          Length = 940

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    GR+I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGRKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|261337521|ref|ZP_05965405.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
 gi|270277921|gb|EFA23775.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
          Length = 521

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 133/401 (33%), Gaps = 51/401 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGV 149
           L  +++  + A L      + + G+ GK+TT  +L   L  +          +    I  
Sbjct: 116 LAIVHRSDILAWLMDGKRAVTVAGAHGKSTTSALLAHILVTAGQGDLADPSYAIGASIQG 175

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P    R       G   +  +   +  F  +   P IA+IT   P HL ++   +   +A
Sbjct: 176 PDGTTRDGGHTGTGDVLVAEADESDGSFAKY--HPTIAIITNAEPDHLDHYGTADRYHAA 233

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--------NADFQLR 261
                     T ++ L  DD     +     AL      ++G +          A F   
Sbjct: 234 FVN--HASHATQSVILCVDDPGARSVLQGMDALTASRTITYGTTAREELGDLNGATFVSI 291

Query: 262 KWKQCSEQS---WMEVQLQGK------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             +Q +         + +  +       + V     G H A+N    +   ++L  D   
Sbjct: 292 SDEQETAGDGSERFVIDMPARVAHAATVVPVTLSIPGIHNARNATAAIIAATLLGMDPFV 351

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A +A + FH   G  +R+         T++D+ Y  +P  + A ++   +  P     R+
Sbjct: 352 AAQAATSFH---GAARRFDIKGTVNGVTVVDD-YAHHPTEIAALLTAARRRYPKA---RL 404

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS----- 427
            VL     +   +Q F  + A+ L+L     V ++G      +     ++  H       
Sbjct: 405 HVLFQ-PHLFSRTQFFAQEFAQALAL--ADDVIVTGIFPARERQEDFANVTAHTIVEQAE 461

Query: 428 -------------ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                        + M      +   +  GDVV+   +   
Sbjct: 462 GITDHAQPWISDMDDMQEAAAAVVERVQPGDVVLTVGAGDI 502


>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
          Length = 478

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 132/358 (36%), Gaps = 44/358 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++ VA  +      I ITG+ GKTT   +L+  L          G+    +       +
Sbjct: 108 GEINVAWEILKDTNWIGITGTNGKTTVTHLLSHILCDNGLYAPFAGNIGTPLCKYACSKK 167

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +   +D+ + EL    +     ++  V+P+I + TT    HL     +E   + K  +  
Sbjct: 168 LEK-IDWVVAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL-- 220

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCSEQSW 271
            LEK+     NYDD   + L+    +L      +    K      D+ +       E+  
Sbjct: 221 -LEKSDFRIYNYDD---KNLRNHYSSLSRGVWITTSLDKSNFIQCDYWIDDQAYIVERGK 276

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              +L+  S+       G H  QN+L+ +  V  +         +LS +        R  
Sbjct: 277 RLFKLEYFSLR------GMHNLQNLLLVIAAVRKVGLSGKEIKDSLSNYKQLP---HRME 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                 +  +I++S   N  S  A IS +       EG+ I + G   +  E S+     
Sbjct: 328 TIYKNNYLEIINDSKATNFDSSIAGISSI-------EGQMIIIAGGRLKGNEYSEW---- 376

Query: 392 LAEVLSLYNISHVWLSGFHVLALK-----DALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +VL    +  ++L G     LK     +   +SI   +SE  D L  F+   L + 
Sbjct: 377 -IKVLKK-KVKCIFLFGESSKVLKMALINEGFKKSI-FEFSELKD-LLNFVFHYLQNN 430


>gi|294789540|ref|ZP_06754775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Simonsiella muelleri ATCC 29453]
 gi|294482477|gb|EFG30169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Simonsiella muelleri ATCC 29453]
          Length = 456

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 123/371 (33%), Gaps = 31/371 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
            K  ++ + G+ GKTTT  ML   L          IG    +  V   L +   D  F +
Sbjct: 108 QKMWVLGVAGTHGKTTTASMLAWVLEYAGYGAGFLIGGVPQNFSVSARLPQ--NDSAFFV 165

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP   ++  +   H   F  +  I +    +   +   G 
Sbjct: 166 IEADEYDTAFFDKRSKFVHYRPRTTILNNLEYDHADIFPDLAAIQTQFHHLIRTVPNQGL 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           I  +      E +           I  FG          +  +  +Q   +V  +G+ + 
Sbjct: 226 IIASG---RAEAIHETIDKGCWTPIEWFGNQAG-----WQIGEADKQGSFDVFFKGEKVG 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G H   N L  +     +   V  A  ALS F   +   +R          T+
Sbjct: 278 RVQWELLGEHNRLNALAVIAAARHVGVSVQAACDALSQFKNVK---RRMEIKGVVNQITV 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P +++  I+ L Q    G  R IAVL      M  +G +  +    L+  L 
Sbjct: 335 YDD-FAHHPTAIETTIAGLRQ--KVGNARIIAVLEPRSNTMK-LGTMKAA----LSGSLK 386

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             N    +  G          P    +H  +  D     +      GD +++  SN  GF
Sbjct: 387 EANAVFCYAGGVDWDVQAALEPLGDKLHIGKQFDEFVNELAKFAQTGDHILIM-SNG-GF 444

Query: 458 YRLINLLLEEF 468
             +   LL + 
Sbjct: 445 GGIHEKLLAKL 455


>gi|317178199|dbj|BAJ55988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F16]
          Length = 447

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTAFLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKQIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + E+ S Y    V  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|307824829|ref|ZP_07655052.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
 gi|307734187|gb|EFO05041.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
          Length = 479

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 116/350 (33%), Gaps = 50/350 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I+AI+GS GK+T   ML     +        G+        L L     +    + E
Sbjct: 132 DAPIVAISGSNGKSTVTTMLGEMAKATGMKVGVGGNLGTPALDLLAL-----NAQLYVLE 186

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A +  ++  HL     + E A  K  +F G    G + +N
Sbjct: 187 LSSFQL----ERTSALNAVAATVLNVSADHLDRHVDMAEYAREKQRVFRG---DGVMVIN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVH 285
            DD     ++        + +++F  +K ADF L       + +   +  +   M     
Sbjct: 240 ADDPVVYAMRDD-----GRKVFTFSINKKADFYL----GYKDDTEYLMHDEACLMPLAEL 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A N L  L +   +  D      AL +F   +G   R +        T +++S
Sbjct: 291 PLEGRHNAANALAALALGVAVGLDEQIMCDALRIF---KGLSHRMQRVAEIRGVTWVNDS 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLY 399
              N  +  AA+            + I + G      DM E+                  
Sbjct: 348 KATNIGACVAALQ-------GYARKVILIAGGDAKGADMNELTP------------AIKE 388

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V L G     +K AL   + V+ ++ M             G+ V++
Sbjct: 389 KAKSVVLMGKDAGLIKQALNGCVPVYSADNMAQAVEIAAGLADVGESVLL 438


>gi|167721346|ref|ZP_02404582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 152

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++     
Sbjct: 18  GATVIDDTYNANPDSMRAAIDVLAAQSAP----RVLVIGEMGEVGDEGPAFHREIGAYAR 73

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
              I  ++  G       DA       H+ +    +   + ++      ++VK S     
Sbjct: 74  ERGIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKM 132

Query: 458 YRLINLLLEE 467
            R+++ L  E
Sbjct: 133 ERVVDALANE 142


>gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 427

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 131/373 (35%), Gaps = 50/373 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  +IAITGS GK+T   ++   ++         G+        L L + P+D    
Sbjct: 93  REAQVPVIAITGSNGKSTVTTLVGEMIAEAGLKVGVGGNIGTP---ALELLKQPMD--LC 147

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI +    +  I
Sbjct: 148 VLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH---SQHI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD       A++     +   SFG   N   +         + W+ +  +      
Sbjct: 201 LINRDD-------AQTLPDVGQVWQSFGLDCNGYGRCE----LDGRHWLTLHGEPLLAVD 249

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +   +    +  ++ L  F   EG   R R          I+
Sbjct: 250 EMKIVGAHNQANALAAMALCDAVGIPREPQLRVLRRF---EGLPHRARFVREVNGVRWIN 306

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + A ++ ++ +    +GR + + G   +  +          + L    I H
Sbjct: 307 DSKATN---VGATLAAVAGVRESVKGRLLLLAGGQGKGQDFGP------VQALLGSQIDH 357

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV----------VKS-- 451
           ++  G     L     ++  V   +          +    GD V+           KS  
Sbjct: 358 MYCFGQDAEVLLALGEQTERVADLDAA---VAKAAADARPGDWVLLAPACASLDQFKSFE 414

Query: 452 SNSCGFYRLINLL 464
           +    F  L+  L
Sbjct: 415 ARGDRFTELVQKL 427


>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
 gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 133/374 (35%), Gaps = 49/374 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++ ITGS GKTT   +L    S+     A  G+          L  +  +++  I E
Sbjct: 107 HAKVVTITGSNGKTTVTSLLGEMASASPLNVAIGGNIGTP-----ALDLLDPNINLYILE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +   IA I  I+  HL  +   +    +K  I++  +K      N
Sbjct: 162 LSSFQL----ETTTSLNADIATILNISADHLDRYRSYDHYIQSKHIIYQQCKK---ALFN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D+  + L              FG ++NADFQL K    + ++++ +  +         
Sbjct: 215 IEDAQTKPLSCALDQ------ICFG-AENADFQLVK---QNNETFISMGSETLLNVKKLK 264

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +  D +  +   +V    +G   R            I++S 
Sbjct: 265 LSGRHNWMNALAALALGDAVGLDKNIML---AVLENYQGLEHRCEFVAQVHGVRWINDSK 321

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  + +AA+  LSQ      G+   +LG   +  + S      L   +       ++ 
Sbjct: 322 GTNVGATQAALMGLSQ---SISGKVHVILGGQGKGADFS------LLRPVFNEVQGDIFC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     +    PR   V   + +       + +   GD+V+     +S           
Sbjct: 373 FGEDAALIASVDPRIQRV---DDLAQAVCLAEQAATAGDIVMFSPACASLDMYKNFMQRG 429

Query: 455 CGFYRLINLLLEEF 468
             F  L+N L +++
Sbjct: 430 DHFKTLVNALEKKY 443


>gi|306827968|ref|ZP_07461235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC
           10782]
 gi|304429887|gb|EFM32929.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC
           10782]
          Length = 442

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 124/360 (34%), Gaps = 50/360 (13%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKT+T  +L+  L +I  T   IG             R   +  + +FE     
Sbjct: 106 AVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGSANAQYFVFE----- 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E         P  ++IT I   H   F+GI ++ +A  +  + ++K   +F+  +D  
Sbjct: 152 SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDDE 209

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            + ++A +       IY +G  K  DF      + +  S  +V  QG+ +   H    G 
Sbjct: 210 LKKIEAPA------PIYYYGFEKGNDFIAYDITRTTNGSDFKVIHQGEVIGQFHVPAYGK 263

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    +  + +   D+      L  F   +      R        T+I + +  +P
Sbjct: 264 HNILNATAVIANLFVAGIDMALVADHLKTFSGVK-----RRFTEKIINDTIIIDDFAHHP 318

Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             + A I    Q            PH   R IA+L D       + S +     +  +Y 
Sbjct: 319 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY-----LAQIYG 373

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +     G   V  L   + +   V   E +  L         D  V V   +     Y 
Sbjct: 374 SAREVDKGEVKVEDLAAKIIKPSQVVTVENVSPLLDH------DNAVYVFMGAGDIQLYE 427


>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 119/352 (33%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAGMNVGLAGNIGKSLALQV----AEDHH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +   AK         ++  K   A   +   +    +  +   ++ +
Sbjct: 207 DDAFIFWNDDPIIKRELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKINEP-IAFNMEQE 265

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L      ++     +   KALS F   E    R          
Sbjct: 266 E----LALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVE---HRLEKVARVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++   
Sbjct: 319 DFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+  G H   L D   R  + V   +T M             G+ V++
Sbjct: 367 CSALVY-MGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|254557006|ref|YP_003063423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
 gi|254045933|gb|ACT62726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
          Length = 459

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 107/318 (33%), Gaps = 32/318 (10%)

Query: 135 KTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           +T A       +IGVP + +A+     D  + EL    L  I+ L     PHIAVIT I 
Sbjct: 137 RTNAGKAYVAGNIGVPASAIAQKATAADTMVTELSSFMLCGIQTL----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL      E    AK  I         + +N+D   +  L  +S A    T+  F + 
Sbjct: 193 STHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQLSKQSQA----TVVPFSRQ 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            N      K     E   +  + +           G H  +N L  + +  +        
Sbjct: 249 AN-----TKDGAYEEAGKLYFKDEYIMDAADIRIPGDHNVENALAAIAVAKLQAVPTAGI 303

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L  F     R +      ++ F+   ++S   N  S + A+    Q         + 
Sbjct: 304 VQVLKTFTGVRHRTQYVETYQDRQFY---NDSKATNLVSTEMALKGFDQ--------PVI 352

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMD 431
           +L    + G   +             ++  + + G     + DA  L     + +++  +
Sbjct: 353 LLAGGLDRGNTFEKL-----APALKAHVKTLIVFGETAEKMADAGRLAGIQDIEFTDNCE 407

Query: 432 GLFLFIQSSLVDGDVVVV 449
                       GD++++
Sbjct: 408 TAVPIAWQHSQAGDIIML 425


>gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 518

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 147/474 (31%), Gaps = 65/474 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           Q F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V          +L +
Sbjct: 34  QHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSYQNGATALIV 91

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142
                     AL   A      +    I ITG+ GKT+T      AL+       A I +
Sbjct: 92  TNIQRA---MALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148

Query: 143 YNN----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            N            +  P +L      R  VD       + +S    +    + +   I 
Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDRVYSLHFGIG 208

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGI 244
           V   I+  H+              K ++   L  +    LN   D F E+ +A   +   
Sbjct: 209 VFLNISSDHVGQNEHPDFANYLFCKEQL---LLNSSVCVLNTQMDHFEEVYQAAKVSTAP 265

Query: 245 KTIYSFGK---SKNADFQLRKWKQCSEQSWMEVQ----------LQGKSMEVVHHGIGYH 291
             IY FG+     + D   +        S  ++           L G   E      G +
Sbjct: 266 DKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDG---EYQSSVAGDY 322

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N        +I      T  +A    H       R      Q   T+  + Y  + A
Sbjct: 323 NVGNATAAAICAAIGGVKKKTIQEAFGQVHIAG----RMEVIRTQEHGTVYVD-YAHDYA 377

Query: 352 SMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           S+K  ++ L  Q       +   VLG     G    S   DL + L+   ++ V L+   
Sbjct: 378 SVKRLLAFLKDQQHQGEPSQITVVLGAP---GNKGVSRRPDLGKALAEERVNRVILTTDD 434

Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+   +   I       V Y             +   GD+VV+  K 
Sbjct: 435 PAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKG 488


>gi|221134088|ref|ZP_03560393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Glaciecola sp. HTCC2999]
          Length = 453

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 153/430 (35%), Gaps = 64/430 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V    D   ++   S P + +D++L                 ++A+ G+
Sbjct: 67  IGNAMSRGNPAVEYVLDR--NLPYTSGPQWLLDNLLK-------------DRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKT+T  +L   L     T    IG    + GV   +     + +F + E         
Sbjct: 112 HGKTSTSSVLAWILEFAGYTPGFLIGGVPENFGVSARIG----EGNFFVIEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP   V+  +   H   F  +  I      +   +   G            
Sbjct: 168 DKRSKFVHYRPRTLVLNNLEFDHADIFDDLNAIKKQFHHLVRSVPANG------------ 215

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKW---KQCSEQSWMEVQLQGK-SMEVVHHGIG 289
           L+ ++ H   ++ +   G     +F  + W   K  ++    EV  QG+   EV    IG
Sbjct: 216 LILSEKHDNNMQDVLEMGCWTTQEFISKDWTAQKTQADGGRFEVYYQGQLQGEVNWSLIG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N LM +     +    D AI++LS F   +   +R          T+ D+ +  +
Sbjct: 276 DHNVHNGLMAIAAAHNVGVTTDIAIESLSEFVNVK---RRMEIKGTVANITVYDD-FAHH 331

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           P ++K  +  L   +  G  R +A+L      M  +G              S      V+
Sbjct: 332 PTAIKTTVEGLK--ANVGVQRILAILEPRSNTMK-LGIHKDQLTE------SWAQADEVY 382

Query: 406 LSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----Y 458
           +     L  ++ +    S+  VH  + +D L   +       D ++V  SN  GF     
Sbjct: 383 IFEPASLSWSIDEVARDSVAPVHPYQDVDKLVEAVVKEAQPSDHILVM-SNG-GFAGIHD 440

Query: 459 RLINLLLEEF 468
           +L+N L   F
Sbjct: 441 KLLNALSARF 450


>gi|326561773|gb|EGE12108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 7169]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 122/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  D    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPADTPSLETTLDKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V+ A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLAPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L   LK+A+  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N   F     RL++ L
Sbjct: 443 NG-DFENIHGRLLDAL 457


>gi|254373068|ref|ZP_04988557.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570795|gb|EDN36449.1| cyanophycin synthetase [Francisella novicida GA99-3549]
          Length = 940

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    GR+I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGRKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|218532974|ref|YP_002423790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium chloromethanicum CM4]
 gi|218525277|gb|ACK85862.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           chloromethanicum CM4]
          Length = 455

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 21/266 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  +    L    +     G+    I         P      + 
Sbjct: 112 PDAPFVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILS----LEPPAATRVHVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +     LT  ++P + ++  + P HL     +E  A+ K  +  G        +
Sbjct: 168 ELSSFQID----LTPSLKPGVGILLNLTPDHLDRHGTMENYAAIKERLVAG---ADLAVI 220

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DD +   +  +     I+  I   G +           +  + + +        +  +
Sbjct: 221 GVDDPYCAAIAERRTGERIRLHIEGHGDAAGDYVGANGTVRGPDGAVI------AEVSGI 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  QN    +     L           +      G   R       G    +++
Sbjct: 275 QALLGDHNLQNAAAAVAAAIRLGLSSAEIA---AGLKSFPGLAHRMEPLRRIGPTLFVND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGR 370
           S   N  S + A+     I     G+
Sbjct: 332 SKATNADSTEKALLAFRDIHWIVGGK 357


>gi|284031631|ref|YP_003381562.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
 gi|283810924|gb|ADB32763.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
          Length = 953

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 100/492 (20%), Positives = 167/492 (33%), Gaps = 84/492 (17%)

Query: 29  GISIDSRSIA--PQEAFFAIKGPHY---D--GHDFILHAVQK------GAGLVVVNTDMV 75
           GISID R++   P+    A +       D  G DFI   + +      GA   V      
Sbjct: 429 GISID-RTLEAHPENVEIAEEAARMIGLDIAGIDFICPDITQPVRETGGAICEVNAAPGF 487

Query: 76  ASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
               + +I  P +    V+  L      +R      I+A+TG+ GKTTT  M++     +
Sbjct: 488 RMHTNPTIGEPQYIAKPVVDMLFPPGSTSR----IPIVAVTGTNGKTTTARMISHVFKGL 543

Query: 134 KKTYACIGSYNNHIGVPLTL---------ARM---PVDVDFGIFELGMSHLGEIRFLTHL 181
            +      +    I   L +         ARM      VDF +FE+     G +R     
Sbjct: 544 GRKVGMTSTDGVVIDERLVIRADASGPKSARMVLQNPRVDFAVFEVA--RGGILREGLGY 601

Query: 182 VRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            R  +AV+  I P HL       +E++A  KA + E + + G   LN DD     ++ K 
Sbjct: 602 ERNDVAVVLNIQPDHLGLRGVDTLEQLADVKAVLVEAVPRDGFAVLNADDPLVRKMRRKC 661

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--------- 290
                + ++       ++ +      C       V  + +  +++    G          
Sbjct: 662 SG---QVVWFSTAEAGSEVREYIEGHCRRGGRAVVLERSELGDMIIMKHGRRSMQLAWTH 718

Query: 291 -----------HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGF 338
                         QN++          A +    + L  F+        R       G 
Sbjct: 719 LLPATFGGRAMMNVQNVMAAAAAAFAAGAPLHDIRQGLRTFNTSYYLSPGRLNEIEVDGR 778

Query: 339 FTLIDESYNANPASM-----KAAISVLSQISPHGEGRRIAVLG--------DMCEMGELS 385
             ++D  +NA    M           L   S  G   RI V+         DM E+GE++
Sbjct: 779 HVIVDYCHNAPAMRMLGDFVDKLGESLGASSEVGRPSRIGVIATAGDRRDDDMRELGEVA 838

Query: 386 QSFHIDLAEVLSLYNIS--------HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
              H D+  V     +          + + G      + A  RS+     E +D +   +
Sbjct: 839 AQ-HFDVVLVREDTRLRGRRRGESAELIVEGVRAAIAQGARCRSVET-VLEELDAVRHAL 896

Query: 438 QSSLVDGDVVVV 449
             S   GD+VV+
Sbjct: 897 TRSNR-GDLVVL 907


>gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK150]
          Length = 481

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 177/501 (35%), Gaps = 82/501 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSRQADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------------VPLTLARMPVDVDFGIFE 166
                 LS      A + + N  +                  + +    +  D    I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +  ++           ++  +        ++      +  GK +   
Sbjct: 241 VNSGMDHFQIVKEQVASM-----------EHDFYGAGSSNTITDSRAFSFEATGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG+   +N     L  L +     A +    K ++        G+        G  
Sbjct: 290 DIQLIGHFNQENAVAAGLACLRL----GASLKDIKKGIAA---TRVPGRMEVLTQKNGAK 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +D  Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 343 VFVD--YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGRLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  + +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVDKIADREEAIKKALSLTEREGDAVILA 453

Query: 450 -KSSNSCGFYRLINLLLEEFP 469
            K +++   Y+++      +P
Sbjct: 454 GKGADA---YQIVEGEKVAYP 471


>gi|254000283|ref|YP_003052346.1| UDP-N-acetylmuramate [Methylovorus sp. SIP3-4]
 gi|253986962|gb|ACT51819.1| UDP-N-acetylmuramate [Methylovorus sp. SIP3-4]
          Length = 457

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 132/375 (35%), Gaps = 30/375 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG-- 163
              ++A+ G+ GKTTT  ML   L          IG    +  +   L   P     G  
Sbjct: 102 DKWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFLIGGVPQNFDISARLPGAPRQEPQGRS 161

Query: 164 ---IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + E            +  V  RP  AV+  +   H   F+ +  I +    +   + 
Sbjct: 162 PFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLAAIETQFHHLVRTVP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G +  N  +   + + A+        + +FG +             +E S+  +Q + 
Sbjct: 222 QQGLVVANGREESLQRVIARG---CWTPVETFGDAHG----WHAGAADAEGSFDVIQGEQ 274

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V  + +G H   N L  L     +   V+  I AL+ F   +   +R         
Sbjct: 275 VLGRVQWNLLGEHNRMNALAALAAARHVGVPVEVGIAALAEFQNVK---RRMEVRGEVKG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLS 397
            T+ D+ +  +P ++   +  L   +  G  R +AVL    E    +    +   A   S
Sbjct: 332 ITVYDD-FAHHPTAITTTLEGLR--AKVGASRILAVL----EPRSNTMKLGVMKAALPAS 384

Query: 398 LYNISHVWLSGFHVLA-LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L +   V+  G ++     +AL     +   ET M  L   I      GD ++V  SN  
Sbjct: 385 LKSADRVYCYGANLGWDAAEALHDMGEIAQVETDMTKLVEAIAREARSGDHILVM-SNG- 442

Query: 456 GFYRLINLLLEEFPA 470
           GF  +   LLE   A
Sbjct: 443 GFGGIHQKLLERLAA 457


>gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
 gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 118/349 (33%), Gaps = 36/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + ATII ITGS GKTTT  M+   L          G+  +     ++        D+ + 
Sbjct: 100 TDATIIGITGSNGKTTTTMMVNHILKEEGLHVGMAGNIGDSYAKMVSENNF----DYYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I       +PHIA+IT I P HL  ++   +   ++K  I E   +   + 
Sbjct: 156 EISSFQLDGI----VDFKPHIAIITNITPDHLDRYNYEFDNYITSKFRIAENQTEDDYLI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV- 283
            + DD        K        +  F  +K       K   C + + + +  Q  ++E+ 
Sbjct: 212 YDADDEVLVSWLEKHPVKS--KLIPFSLTKQ-----FKEGVCLKNNKIHITTQNNTIEMA 264

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N +       ++     T   ++  F    G   R    L       
Sbjct: 265 TDNLALEGKHNLKNTMAASAASKLVNIRKATIRASIENFQ---GAAHRLESVLKIAHVHY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  +   A+  +   +         V G   + G   +S        L    +
Sbjct: 322 VNDSKATNVNATYYALESMKSATV------WIVGG--VDKGNDYKSLMP-----LVREKV 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             +   G     + +     + +   +++M+            GD V++
Sbjct: 369 KAIICLGVDNSKIIEEFGNVVDLLVETKSMNEAVKMAYKIGQRGDTVLL 417


>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 42/347 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   ++T             G+    +     L+ +  + +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV-----LSLLNDEYELF 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    A I  I+  H+    + +EE   AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     L        +K +  F +  NA++ +R     S     +  +  K M 
Sbjct: 210 VIVNGED----RLTYPLETQAVKKLIRFAE-YNAEYTMRNGILYSGD---DAIIPTKEM- 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +        +  +KA        G   R++          +
Sbjct: 261 ---LISGRHNEMNALAAMALAEAAGIPREGIVKA---LQVYGGLDHRFQAVKTNDGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI 
Sbjct: 315 NDSKATNVGSTVAALNGL-----QVAGTLYLLLG-----GDGKAADFSELKPLINKPNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  G     L     +S+ V   ETM      I+  L  GD+V++
Sbjct: 364 VCYCFGQDGAQLAALSSQSVLV---ETMQQAIEQIRPQLKKGDMVLL 407


>gi|238752430|ref|ZP_04613907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
 gi|238709363|gb|EEQ01604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
          Length = 442

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 129/349 (36%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++AITGS GK+T   ++     +        G+          L+ +  +    
Sbjct: 105 RENQAPLVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP-----ALSLLQQENQLV 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E       
Sbjct: 160 VLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN---AKV 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG        +  +    +Q  + ++++G+ + 
Sbjct: 213 CVVNADDALTMPIRG-----ADSRCISFGVD------VGDYHLNKQQGEIWLRVRGEKVL 261

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++ AL+ F    G   R++         
Sbjct: 262 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLTALTTFT---GLPHRFQLVFEHNGVR 318

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   +
Sbjct: 319 WINDSKATNVGSTEAALDGL-----QVDGTLHLLLGGDGKSADFS-----GLTRFLQGDH 368

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L    P    +  +ETM+   + +  +++  D+V++
Sbjct: 369 I-KIYCFGRDGEQLAQLRPEVSQL--TETMEQAMVLLAKTVIPRDMVLL 414


>gi|300768844|ref|ZP_07078738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493577|gb|EFK28751.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 459

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 107/318 (33%), Gaps = 32/318 (10%)

Query: 135 KTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           +T A       +IGVP + +A+     D  + EL    L  I+ L     PHIAVIT I 
Sbjct: 137 RTNAGKAYVAGNIGVPASAIAQKATAADTMVTELSSFMLCGIQTL----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL      E    AK  I         + +N+D   +  L  +S A    T+  F + 
Sbjct: 193 STHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQLSKQSQA----TVVPFSRQ 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            N      K     E   +  + +           G H  +N L  + +  +        
Sbjct: 249 AN-----TKDGAYEEAGKLYFKDEYIMDAADIRIPGDHNVENALAAIAVAKLQAVPTAGI 303

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L  F     R +      ++ F+   ++S   N  S + A+    Q         + 
Sbjct: 304 VQVLKTFTGVRHRTQYVETYQDRQFY---NDSKATNLVSTEMALKGFDQ--------PVI 352

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMD 431
           +L    + G   +             ++  + + G     + DA  L     + +++  +
Sbjct: 353 LLAGGLDRGNTFEKL-----APALKAHVKTLIVFGETAEKMADAGRLAGIQDIEFTDNCE 407

Query: 432 GLFLFIQSSLVDGDVVVV 449
                       GD++++
Sbjct: 408 TAVPIAWQHSQAGDIIML 425


>gi|160897523|ref|YP_001563105.1| Mur ligase middle domain-containing protein [Delftia acidovorans
            SPH-1]
 gi|160363107|gb|ABX34720.1| Mur ligase middle domain protein [Delftia acidovorans SPH-1]
          Length = 1097

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 150/384 (39%), Gaps = 30/384 (7%)

Query: 80   SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
               +PV  V D+   L  LA AAR R ++ ++A++G VGKT+T  M+   L         
Sbjct: 684  DHGVPVLHVPDMEEGLRNLAQAARRRIQSPVVAVSGCVGKTSTLGMMRQCLQDGGD---A 740

Query: 140  IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA------ 193
             G      G  L +          + EL +  L   R    L+ P I VIT ++      
Sbjct: 741  RGDALLSQGTALQMINWSEASPCALLELPLQAL---RGDLPLIDPDILVITNLSINNTPH 797

Query: 194  -----PAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
                 P+  +   G  +        E  + + K   +  + D      +   +  +G++ 
Sbjct: 798  SGESEPSGQAGLPGERKYEALQEVLEAMQHMHKGSALVTDQDIGENPSVIEHAKRMGLR- 856

Query: 247  IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + +FG   NA  +    +       +++ +    + +     G+HMA N    L  +  L
Sbjct: 857  LITFGPHCNAQVR----EMGFHNGNLQIGMGSLRLGISLQSDGHHMALNAQAALAALHAL 912

Query: 307  TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                     +L+ + P  G G+            L+D S + +  SM AA S L  ++PH
Sbjct: 913  GYAPAQVQASLAHWQPMIGAGQPQFLPS---GICLLDHSLSNHLLSMTAAFSQLQSVAPH 969

Query: 367  GEGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
               R I + G   + G+ S  +  + L  ++       V L G  +  L  AL   +HV+
Sbjct: 970  VSRRLIVLAG--IQPGQASIDAAQLALEPLVRDAQARRVLLYGEPLRPLAAALGDLLHVN 1027

Query: 426  YSETMDGLFLFIQSSLVDGDVVVV 449
            + + ++ L   +  +   GD V++
Sbjct: 1028 WYDDLNQLICSLLRTTHKGDTVLL 1051


>gi|28378801|ref|NP_785693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum WCFS1]
 gi|308180998|ref|YP_003925126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258037|sp|Q88V80|MURD_LACPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28271638|emb|CAD64544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           plantarum WCFS1]
 gi|308046489|gb|ADN99032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 459

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 107/318 (33%), Gaps = 32/318 (10%)

Query: 135 KTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           +T A       +IGVP + +A+     D  + EL    L  I+ L     PHIAVIT I 
Sbjct: 137 RTNAGKAYVAGNIGVPASAIAQKATAADTMVTELSSFMLCGIQTL----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL      E    AK  I         + +N+D   +  L  +S A    T+  F + 
Sbjct: 193 STHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQLSKQSQA----TVVPFSRQ 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            N      K     E   +  + +           G H  +N L  + +  +        
Sbjct: 249 AN-----TKDGAYEEAGKLYFKDEYIMDAADIRIPGDHNVENALAAIAVAKLQAVPTAGI 303

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L  F     R +      ++ F+   ++S   N  S + A+    Q         + 
Sbjct: 304 VQVLKTFTGVRHRTQYVETYQDRQFY---NDSKATNLVSTEMALKGFDQ--------PVI 352

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMD 431
           +L    + G   +             ++  + + G     + DA  L     + +++  +
Sbjct: 353 LLAGGLDRGNTFEKL-----APALKAHVKTLIVFGETAEKMADAGRLAGIQDIEFTDNCE 407

Query: 432 GLFLFIQSSLVDGDVVVV 449
                       GD++++
Sbjct: 408 TAVPIAWQHSQAGDIIML 425


>gi|330828377|ref|YP_004391329.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
 gi|328803513|gb|AEB48712.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
          Length = 456

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 137/413 (33%), Gaps = 38/413 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   +     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEYVLDRNLPYISGPQWLLEHVLQDRWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L   K      IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 VLEYAKLEPGFLIGGVPGNFPVSARLGSAP----FFVIEADEYDCAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +   G +     D     ++       ++
Sbjct: 180 TLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQADDNLTAVRKMGCWSEVE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            +         D + +  K   + S  EV L G+    VH   IG H   N LM +    
Sbjct: 240 LV------GQDDAKWQAVKLADDGSAFEVWLDGEKQGEVHWECIGEHNVNNGLMAIAAAR 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+  I AL  F   +   +R          ++ D+ +  +P +++  +  L   +
Sbjct: 294 HAGVMVEHGIAALCQFKSPK---RRMELKGEVAGISVYDD-FAHHPTAIETTLGGLR--A 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLY-NISHVWL-----SGFHVLALKD 416
             G  R +AVL    E    +     H +  E+   +     V+       G+ +  +  
Sbjct: 348 KVGCSRILAVL----EPRSNTMKLGVHKE--ELAGCFDGADEVFFFQPPNIGWDLGEVTA 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + R   V     ++ L   + +   DGD +++  SN  GF  + + L+    
Sbjct: 402 HMTRPAKV--FNDLETLINRLVAESRDGDHILIM-SNG-GFGGIHDKLIARLK 450


>gi|91792018|ref|YP_561669.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
 gi|91714020|gb|ABE53946.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
          Length = 464

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 133/371 (35%), Gaps = 28/371 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     + +F + E  
Sbjct: 109 VLAVSGTHGKTSTSSMLAWILEYSGYEPGFLIGGVPQNFGVSARLG----NSNFFVVEAD 164

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P   VI  +   H   F  +  I      +   +   G I   
Sbjct: 165 EYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLTAIQRQFNHVIRTVPGQGKIIWP 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSME- 282
            +    + +         +  YS G       +   W      ++    EV   G S   
Sbjct: 225 ANSEAVQQVIEMG-CWSEQETYSAGVHDFNTEKTLGWHAKTLSADAHEFEVYFDGHSQGV 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  + IG H  +N +M +     +      A+ ALS F P +   +R       G   + 
Sbjct: 284 MSWNLIGQHNVENAVMAIAAARHVGVVPAQAMAALSEFSPPK---RRLELLGTIGGVAVF 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNI 401
           D+ +  +P ++ + +  L   +  G G+   VL        + Q  H D LA  L   + 
Sbjct: 341 DD-FAHHPTAIDSTLQGLR--AKVGNGKITVVLE--PRSNTMKQGVHKDTLAHSLVRADQ 395

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
           ++++ +      LK ++   SI V     ++ +   +      GD +V+  SN  GF   
Sbjct: 396 AYLYQADSISWDLKSSMQTASIPVSVKTDIEQIIDALCHDAKAGDTIVIM-SNG-GFNGI 453

Query: 459 --RLINLLLEE 467
             +L+  L + 
Sbjct: 454 HKKLLEALADR 464


>gi|238918401|ref|YP_002931915.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, [Edwardsiella ictaluri 93-146]
 gi|238867969|gb|ACR67680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, putative [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 146/422 (34%), Gaps = 49/422 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V T +  +I  +S P +  D+VL                 +IAI G+
Sbjct: 67  IGNALARG--NPCVETILERNIPYVSGPQWLHDEVLR-------------HRWVIAIAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L S        IG    +  V   L   P    F + E         
Sbjct: 112 HGKTTTAGMVNWILESCGYEPGFVIGGVPGNFSVSARLGNSP----FFVIEADEYDCAFF 167

Query: 176 RFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V   P   ++  +   H   F  +  I      +   +   G I L   D+  +
Sbjct: 168 DKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQRQFHHLVRLVPGKGRIILPAGDASLK 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
            + A       +          A + +   +  ++ S   V L G  + EV    +G H 
Sbjct: 228 QVMAMGCWSEQELC-----GDEAAWNVT--RLSADASHFSVSLDGACVGEVQWTLVGEHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N LM +     +      A +AL  F       +R          ++ D+ +  +P +
Sbjct: 281 MHNGLMAIAAARHVGVPPAEACRALGSFINAR---RRLELRGQAHGVSVYDD-FAHHPTA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGF-- 409
           + A ++ L      G  R +AVL    E    +    +   E+         V+L     
Sbjct: 337 ILATLAALRG-KVGGTARILAVL----EPRSNTMKMGVCKNELAPALGRADEVYLYQPQH 391

Query: 410 ---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               V+ + +A  +    ++S  +  L   I  +   GD ++V  SN  GF  + + LL+
Sbjct: 392 IPWQVVEVAEACVQ--PAYWSADLGTLVEMIVKNAQPGDHILVM-SNG-GFGDIHDRLLQ 447

Query: 467 EF 468
             
Sbjct: 448 AL 449


>gi|123440792|ref|YP_001004783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087753|emb|CAL10538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 461

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 134/380 (35%), Gaps = 46/380 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI G+ GKTTT  M+   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAIAGTHGKTTTAGMVAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  ++ I      +   +   G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGAGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK     + S  EV L  K + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGRWFARKVAV--DASVFEVFLDNKLVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPAAACRALGDFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGMCRNELAPSLGR------A 381

Query: 402 SHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L       + V+ + +A  +    ++S  +D L   +  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPQHISWQVVEVAEACIQ--PAYWSADIDTLVDMVVKTAQPGDHILVM-SNG-G 437

Query: 457 F----YRLINLL--LEEFPA 470
           F     +L++ L    E+ A
Sbjct: 438 FGGIHDKLLSALSQKAEYEA 457


>gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
          Length = 516

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 144/469 (30%), Gaps = 61/469 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  ISYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGATCYVAEQPFPEGKGMH---ALVVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L      +     A   S N+ 
Sbjct: 89  DVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKT 246
             I P H+         +    K ++   L  +    +N + D F E+  A +      +
Sbjct: 209 LNITPDHIGPNEHPNFADYLHCKLQL---LVNSRKCIINAETDHFSEVYAAATTTTNPDS 265

Query: 247 IYSFGKS--KNADFQL------RKWKQCSEQSWMEV-------QLQGKSMEVVHHGIGYH 291
           IY F +   +N D ++      +  +    ++  ++       +      E     IG  
Sbjct: 266 IYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +  A+ D A +           G+            ++D  Y  N A
Sbjct: 326 NEINGTAAIIGAGLGGANHDHAAEG---IRHVTIPGRMETEKTKNHGLVVVD--YAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           SM A +  +         + I V+G   + G      F   L+       ++        
Sbjct: 381 SMMALMGFMK--KEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFED 438

Query: 411 VLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
            + + + +   I     +       +       S     DVV++  K +
Sbjct: 439 PMDIAEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGA 487


>gi|153809197|ref|ZP_01961865.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
 gi|149128173|gb|EDM19393.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEDHH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG 278
                   DD       AK         ++  K   A   +   +   +E     ++   
Sbjct: 207 DDAFIFWNDDPIIRHELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 264 ---QEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFRGVE---HRLEKVARVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 318 IDFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L D   R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|228470194|ref|ZP_04055101.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas uenonis 60-3]
 gi|228308145|gb|EEK17008.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas uenonis 60-3]
          Length = 457

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 125/393 (31%), Gaps = 43/393 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   +  + S    V    + LG + +             +A+ GS GKTTT  ML
Sbjct: 75  AIPHDHPELCYLRSHHFRVLKRAEALGVIAESYR---------TLAVAGSHGKTTTTNML 125

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L   K+   C            +        +  + E       E       + P++
Sbjct: 126 AHILDGAKEV-GCTAFIGGLAVDTGSNFIYSDHSNLLVVEA-----DEYDRSFLHLNPYM 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T+    HL  +       +   E    ++  GT+ +       E L  K H      
Sbjct: 180 AVVTSTDADHLDIYGDYAGYLAGFEEFCSQIQPGGTLLM------KEGLPIKPHLAEGVR 233

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIG-YHMAQNMLMTLGIV 303
             ++G +  AD               +      G  +E V  G+      +N    + I 
Sbjct: 234 TLTYGSASTADVYYDHVTVGDGTIRFDWHYPEAGIHLEQVALGVPVRTNLENATAAMTIA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +        ++ +  F    G  +R+   L      LID+ Y  +P  + ++I  + +I
Sbjct: 294 YLNGVAPANIVRGVESF---RGTKRRFELVLQTDRHLLIDD-YAHHPVELDSSIRSIKEI 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLAL 414
               +   +A+      +   +  F+ D A+         VL +Y      + G     +
Sbjct: 350 YGSED--VLAIF--QPHLYSRTADFYQDFAKSLSHVDQVIVLDIYPAREEPMPGVTSELI 405

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              L       +  T + L   ++   +   VV
Sbjct: 406 YKELTAPHR--WLCTKEELLPLLRQIKLPRVVV 436


>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
 gi|156858825|gb|EDO52256.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
          Length = 443

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 122/352 (34%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A ++ ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 94  FAGRYTDAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----ATEQH 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   +++   AK  I +    
Sbjct: 150 DYYVIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTP 205

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K         ++  K   A   +   +    +    +    +
Sbjct: 206 EDAFIFWNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVEDGEVEINEP---IAFNME 262

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+  H  G H   N L      ++     +   KALS F   E    R          
Sbjct: 263 QEELALH--GTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVE---HRLEKVATVRGV 317

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           + I++S   N  S   A+  +        G+ + +LG     G+   + + ++ +++   
Sbjct: 318 SFINDSKATNVNSCWYALQSM-------TGKTVLILG-----GKDKGNDYTEIEDLVREK 365

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L     R  + V   +T M             G+ V++
Sbjct: 366 CSALVYL-GLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLL 416


>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 454

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 103/331 (31%), Gaps = 35/331 (10%)

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++             +G+  N     +  A+        + EL    L       +  R
Sbjct: 126 SIVGEICKEAGLDTYVVGNIGNPAISAVEEAQPGA---VLVIELSSFQL----EAVYDFR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P ++ +  +   H++    +E  A AKA IF          LNYDD     +     A  
Sbjct: 179 PEVSTVLNLTEDHMNRHHTMENYAKAKANIFAKQTPESVCVLNYDDPITRDMGNTCQARP 238

Query: 244 IKTIYSFGKSKNADFQL---RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +   +S      A   L   +      +   +E+              G H  +N +  +
Sbjct: 239 V--YFSRQSRPEAGIYLDDNKNIIAVKDGREVEIV-----NAEDLSLPGGHNLENSMAAI 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+      D +   K L+ F   E    R            +++S   NP S   A+   
Sbjct: 292 GLCLHFGIDKEIIKKVLTTFKAVE---HRLEYVNTVNGVVYVNDSKGTNPDSTIKAVQS- 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  +   I + G   +  +       +L ++   Y +  V + G     + D   +
Sbjct: 348 ------YKTPIILIAGGYDKGSDF-----RELFDIAVNY-VRTVLVIGQTADLIADTAFK 395

Query: 421 S--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    ++  +++    +         DVV++
Sbjct: 396 AGIKEIYKLDSLKEAVIKASQIADKDDVVLL 426


>gi|226950973|ref|YP_002806064.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
 gi|254766043|sp|C1FNC3|MURD_CLOBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226843277|gb|ACO85943.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNEMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +++     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMINKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  + I     E       +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|167912655|ref|ZP_02499746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 158

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 320 FHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           F P +GR +  R A       T+ID++YNANP SM AAI VL+  S      R+ V+G+M
Sbjct: 5   FAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMLAAIDVLAAQSAP----RVLVIGEM 60

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G+   +FH ++        I  ++  G       DA       H+ +    +   + 
Sbjct: 61  GEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLA 119

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++      ++VK S      R+++ L  E
Sbjct: 120 ANFGAHATLLVKGSRFMKMERVVDALANE 148


>gi|326577894|gb|EGE27758.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis O35E]
          Length = 460

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 122/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  D    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPADTPSLETTLDKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V+ A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLAPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L   LK+A+  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N   F     RL++ L
Sbjct: 443 NG-DFENIHGRLLDAL 457


>gi|24213538|ref|NP_711019.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           interrogans serovar Lai str. 56601]
 gi|30316039|sp|Q8F7V4|MURD_LEPIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24194322|gb|AAN48037.1|AE011269_3 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 463

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 127/376 (33%), Gaps = 49/376 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++    +++      IPV    D+           R   K  II ITG+ GK+TT  ++ 
Sbjct: 72  ILPTHPILSYAADKKIPVVSEIDL----------GRYFFKGKIIGITGTDGKSTTTSLIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L          G+                 +   + EL    L +    +  +   ++
Sbjct: 122 HLLKESFPDLKEGGNLGIPFTSF-----CKESISLAVLELSSYQLED----SSPLHLDVS 172

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIK 245
           V   +A  HL     +E    AK +I +      T+ +       E +K +  +      
Sbjct: 173 VFLNLASDHLERHKTMENYFQAKLKIADLSNSNHTLIV------SEKIKERILNSISYQC 226

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + SFGK+ +++  L +     + S     +         +  G H  +N+  ++     
Sbjct: 227 KLLSFGKTSDSNAFLDENSLKIKTSKFVYDI------SKFYLPGTHNRENLAASILAAEE 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    ++    + +F    G   R++ A  +   + I++S + N  SM A ++    I  
Sbjct: 281 IGGKPESIQTRIPLF---RGLPHRFQIAGEKLGISFINDSKSTNLHSMLAGMATWKNIDQ 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423
                   +LG   +  +L   ++        +  I  V L G      +  +       
Sbjct: 338 TC-----LILGGRPKQEDLKPLYN------FLIRGIGCVVLFGEARATWESGIKNIIGEK 386

Query: 424 VHYSETMDGLFLFIQS 439
           ++  E ++  F   + 
Sbjct: 387 LYCVENLNDTFEIFKK 402


>gi|16767662|ref|NP_463277.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551340|ref|ZP_02345095.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991193|ref|ZP_02572292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197248271|ref|YP_002149331.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263966|ref|ZP_03164040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|200389114|ref|ZP_03215726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|238910573|ref|ZP_04654410.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|16422979|gb|AAL23236.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197211974|gb|ACH49371.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242221|gb|EDY24841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|199606212|gb|EDZ04757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205323947|gb|EDZ11786.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330336|gb|EDZ17100.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249506|emb|CBG27371.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996754|gb|ACY91639.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160903|emb|CBW20435.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915513|dbj|BAJ39487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222618|gb|EFX47690.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615578|gb|EFY12498.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618638|gb|EFY15527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322621949|gb|EFY18799.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627673|gb|EFY24464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630980|gb|EFY27744.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637801|gb|EFY34502.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643966|gb|EFY40514.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650959|gb|EFY47344.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656789|gb|EFY53077.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659787|gb|EFY56030.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662002|gb|EFY58218.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666249|gb|EFY62427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672669|gb|EFY68780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676099|gb|EFY72170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680583|gb|EFY76621.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684523|gb|EFY80527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132753|gb|ADX20183.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192838|gb|EFZ78064.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197286|gb|EFZ82426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201597|gb|EFZ86661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206111|gb|EFZ91073.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213119|gb|EFZ97921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215493|gb|EGA00237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219478|gb|EGA03963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227781|gb|EGA11935.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228951|gb|EGA13080.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236437|gb|EGA20513.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241891|gb|EGA25920.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247960|gb|EGA31897.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251402|gb|EGA35273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258232|gb|EGA41909.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263622|gb|EGA47143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265782|gb|EGA49278.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270226|gb|EGA53674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332991227|gb|AEF10210.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 459

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 35/397 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 EACVQPAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
 gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
          Length = 456

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 31/383 (8%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+  +++   SL IP+       G  +      A   SK+ I+A+TG+ GKTTT  +LT 
Sbjct: 69  VDRIVISPGISLDIPIVKAAHARGIDVVSEVELAYEVSKSPIVAVTGTNGKTTTTTLLTK 128

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    K     G+  + +     +A       F + EL    L  I++     RP  A+
Sbjct: 129 VLEGSGKPVHVGGNIGDSLSE---VAYSMPAGGFLVAELSSYQLETIKYF----RPIGAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  I P HL+    +E   +AK  IFE    T  + LN DD     ++ +S +  +K   
Sbjct: 182 MLNITPDHLARHKTMENYIAAKERIFENQLSTDYLVLNIDDPVVADMEHRSSSHILKISQ 241

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                  A +        ++    +  +  + +    H  G H  +N+L  + +   L  
Sbjct: 242 KKAVENGA-YYADGQCYIAKDGVAKFVIGNEDI----HIPGSHNIENILTVIALSHALGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            V+T  + +S FH  E R +R +        T  ++S   N  S+  A+    Q      
Sbjct: 297 PVETIHRIISEFHGVEHRLERVKTI---DGITFYNDSKATNVDSVVKALESFDQ------ 347

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
            + I + G   +M  L           L       V   G      + A   +    ++ 
Sbjct: 348 -QVILLAGGHDKMTPLEDFM------ELVKEKTKAVIFMGEAADRFETAAKEAGVKPIYR 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           + +M             GD+V++
Sbjct: 401 ALSMKEAVEQGYKLAETGDIVLL 423


>gi|242237993|ref|YP_002986174.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
 gi|242130050|gb|ACS84352.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
          Length = 460

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 139/412 (33%), Gaps = 42/412 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     +IA+ G+ GKTTT  M+T 
Sbjct: 64  LVIVGNAMTRGNPCVEAVLERNIPYVSGPQWLHDHVLRDRWVIAVAGTHGKTTTAGMVTW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +    T++       F + E            +  V   P  
Sbjct: 124 ILEACG---YQPGFVIGGVPGNFTVSARLGQSPFFVVEADEYDCAFFDKRSKFVHYSPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +  +G I +  +D   + +         + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGRIIIPANDLHLKQVMTMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   ++ +K    S+ S  +V L  + + EV    +G H   N LM +     
Sbjct: 241 V-----GEEGIWKAKKV--ASDASVFQVYLDNELVGEVSWKLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A + L  F       +R          ++ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVMPGDACQTLGEFINAH---RRLELRGTADGVSVYDD-FAHHPTAILATLAALRS-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLALKD 416
            G  R +AVL      M  MG         L           V+L         V  + D
Sbjct: 349 GGTARILAVLEPRSNTMK-MGHCKNELAPALGR------ADGVFLFQPQHIPWQVAEVAD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLL 464
           A  +    H+S  +D L   I  +   GD ++V  SN  GF     +L++ L
Sbjct: 402 ACVQ--PAHWSADVDTLVDMIVKTAQPGDHILVM-SNG-GFGNIHSKLLDAL 449


>gi|238787571|ref|ZP_04631369.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238724358|gb|EEQ16000.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 461

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 131/378 (34%), Gaps = 44/378 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M+   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMVAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVLLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A + L  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRVLGEFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAHWSADIDTLVEMIVKTAQPGDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEEFPA 470
           F     +L+  L ++   
Sbjct: 438 FGGIHDKLLAALSKKAEQ 455


>gi|168180985|ref|ZP_02615649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
 gi|182668046|gb|EDT80025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNEMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +++     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMINKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  + I     E       +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1056]
          Length = 481

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 167/484 (34%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQILSQ-NHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N     F+++K +  ++           ++  +         +      +  GK +   
Sbjct: 241 VNNGMDHFQIVKEQVASM-----------EHDFYGAGSSNTIIDSQAFSFEAAGKLAGRY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++          R      +   
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAATRVPG----RMEVLTQKNGA 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 342 KIFVD-YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  E +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVEKIADREEAIKKALSLTEREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|332187398|ref|ZP_08389136.1| mur ligase family, catalytic domain protein [Sphingomonas sp. S17]
 gi|332012559|gb|EGI54626.1| mur ligase family, catalytic domain protein [Sphingomonas sp. S17]
          Length = 461

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 127/408 (31%), Gaps = 45/408 (11%)

Query: 80  SLSIPVFGVDDVLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK- 135
             ++P     + LG   A     +A      A  I + G+ GK+T   M+   L +  + 
Sbjct: 79  EETVPDIVAANRLGCSRATRAQMLAGLFNESALPIGVAGTSGKSTVTGMIAFILHATGRD 138

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             A  G+       P +          G  +  +S + E      L  P IAV+  ++  
Sbjct: 139 PTAMNGAVMKDFVSPDSPF---ASALVGAGDAFVSEVDESDGSIALYNPAIAVLNNVSLD 195

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H      +EE+ +              +  N  D+    L A      I  + +F     
Sbjct: 196 H----KSLEELRTLFGGFAGRARH---VVANAGDAETAALLAD-----IPNLTTFAVEGA 243

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD      K        ++   G    V     G H   N L  +G        +  AI+
Sbjct: 244 ADLVAEALKPEPFAIGFDLVTGGAGYHVRLSVPGRHNVSNALAAIGASVAAGVPLIDAIR 303

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+  F    G  +R+         T+ID+ +  NP  + A +  L          R+ +L
Sbjct: 304 AVERFT---GLKRRFEKVGEANGVTVIDD-FGHNPDKIAATLDTLHAFPG-----RLLIL 354

Query: 376 GDMCEMGE---------LSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420
                 G           S +  + L +VL++      +  G           + D   +
Sbjct: 355 FQPHGYGPLKVMRTELVDSIAARMKLGDVLAM--PDPAYFGGTVAREVTSADIVADLRAK 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +   +          + +    GD +VV  +       L   ++E  
Sbjct: 413 GVDARHIADRAAAADALVAEAKPGDRIVVMGARDDTLSLLAQEMVERL 460


>gi|213865366|ref|ZP_03387485.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 423

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 132/399 (33%), Gaps = 39/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 30  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 89

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 90  ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 145

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 146 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 205

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 206 LV-----GEQGHWQAK--KLTTDTSEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 258

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 259 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 313

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 314 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 366

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 367 DACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG 402


>gi|209921729|ref|YP_002295813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
 gi|209914988|dbj|BAG80062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
          Length = 457

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPTHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +    D ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPSDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|167614190|gb|ABZ89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 438

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 120/348 (34%), Gaps = 41/348 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   II+ITG+ GK+T   ++              G+          L  +    D  
Sbjct: 102 RETTVPIISITGTNGKSTVATIVKNIAKKSGYKVYLGGNIGFP-----ALDMLEKKADLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I EL    L  I      ++  ++V+  I   HL  +  G ++    K  I++  E    
Sbjct: 157 ILELSSFQLENI----FSLKSKLSVVLNINEDHLDRYPDGFQQYKKIKLSIYKNSE---I 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N         K        K   +FG + ++D+ +   K            Q K  +
Sbjct: 210 CLINL------REKKYCFKNKHKKYITFGTN-DSDYYVSSIKDK----IFLYYKQKKIFD 258

Query: 283 VVHHGIGYH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +    I  H   +N L++L I   +    D      S F        R++        + 
Sbjct: 259 MSKTSIHEHQNYENALVSLAISDAMNFPRDKVKYVFSNFKSLP---HRFQIVHKHNDISW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N  S K A+S +     + +G    +LG     G+   +    L   L    +
Sbjct: 316 INDSKSTNINSTKIALSNI-----NTKGTIWLLLG-----GDKKSANFQILKNDLEKLKV 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G   + +     +     Y E +    + I   ++ GD+V++
Sbjct: 366 -KIYCFGKDGMNIAKIFQKKS--IYIENLKDAMILISKEVMSGDIVLL 410


>gi|329117290|ref|ZP_08246007.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis
           NCFD 2020]
 gi|326907695|gb|EGE54609.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis
           NCFD 2020]
          Length = 443

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 132/374 (35%), Gaps = 50/374 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T   + G+ GKT+T  +L+  L +I  T   IG             R  
Sbjct: 93  HEFLGDFMKQFTSFGVAGAHGKTSTTGLLSHVLKNITDTSYLIGDG---------TGRGS 143

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +  + +FE       E         P  ++IT I   H   F+GIE++ +A  +  + +
Sbjct: 144 ANAQYFVFE-----SDEYERHFMPYHPEYSIITNIDFDHPDYFTGIEDVFAAFNDYAKQV 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +K   +F+  +D   + + A +       IY +G S   +F     ++ +  S  +V+  
Sbjct: 199 KK--ALFVYGEDPELKKISANA------PIYYYGFSDEDNFTAYDIRRTTNGSDFKVKHD 250

Query: 278 GKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +   H    G H   N    +  + I   D+D   K +  F+  +      R     
Sbjct: 251 GQEIGDFHVPAYGKHNILNATAVIANLFIAGFDMDLVAKHMVSFNGVK-----RRFTEKI 305

Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386
              T+I + +  +P  + A I    Q            PH   R IA+L +       + 
Sbjct: 306 INDTIIIDDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDEFALALNEAD 365

Query: 387 SFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           S +  LA++  S   + H       V  L+  + +   +   E +  L         +  
Sbjct: 366 SVY--LAKIYGSAREVDH---GDVKVEDLEVKINKPSKIITVENVSPLLDH------NNA 414

Query: 446 VVVVKSSNSCGFYR 459
           V V   +     Y 
Sbjct: 415 VYVFMGAGDIQLYE 428


>gi|205355172|ref|YP_002228973.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274953|emb|CAR40023.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326630330|gb|EGE36673.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 457

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 140/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEEFPAIQ 472
           DA  +    H+S  +D L   +  +   GD ++V    S       +L++ L ++   ++
Sbjct: 401 DACVQ--PAHWSGDVDTLAEMVVKTAQPGDHILVMSNGSFGGIHQ-KLLDGLAKKALVVE 457


>gi|169350228|ref|ZP_02867166.1| hypothetical protein CLOSPI_00972 [Clostridium spiroforme DSM 1552]
 gi|169293011|gb|EDS75144.1| hypothetical protein CLOSPI_00972 [Clostridium spiroforme DSM 1552]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 121/414 (29%), Gaps = 47/414 (11%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F    ++ G  +++       S   + +     +  +          +       I+I G
Sbjct: 51  FDADNIKDGYTVII---GNAFSDDHVEVKAALANPTVKCYRYFEFLGKFMENFISISIAG 107

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GKTTT  M         KT   IG    H            D  + I E        +
Sbjct: 108 THGKTTTTGMAYHLFEDFDKTTVLIGDGTGH---------ACKDSKYFIAESCEFQDHFL 158

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +      P+ A+I  I   H+  F  +E    +  +    ++   T+ +  DD   + +
Sbjct: 159 HY-----YPNYAIINNIELDHVDYFGNLERYIESFEKFANQVK--DTVIVWGDDPNIKKI 211

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQ 294
             +      K +  FG +   D +     + +     +V +  +          G HM  
Sbjct: 212 NFE------KRVMRFGLNDYNDVRAVNVIENNLGFSFDVYIHNELFGHFNLPFFGNHMLY 265

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +  +   D +     LS F   + R        N     +  + Y  +P ++K
Sbjct: 266 NSLAIITLGYLENMDSEYIQDKLSTFQGTKRRYSVTEVGNN-----IYVDDYAHHPTAIK 320

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
             I           G++I  +    +       F ++ A  + L +  +      + +  
Sbjct: 321 YVIEA---TRVRYPGKKIVAVFK-PDRFSRGARFAVEFARAMDLADYPYFCPFPENAVKE 376

Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSC-GFYR 459
                 + D                    +       DVV +  SS        
Sbjct: 377 EGIDIDIYDIAKNLPRAKVINEDQEAAKELAQY---DDVVFLFMSSKDIYKLEE 427


>gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
 gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
          Length = 506

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 142/430 (33%), Gaps = 59/430 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             +++       +  VPQ         +S DSR+      FF  KG  +    ++  A+ 
Sbjct: 21  LKEIITPTD--WVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAAAID 76

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +G    +  T    +  +  I V  + + +  + +       + +   I ITG+ GKT+ 
Sbjct: 77  QGIQCYISETPYD-NFATYGIIVTDIRETMAVIAQAF-YGHPQEQLVTIGITGTKGKTSC 134

Query: 123 KEMLTIALSS-IKKTYACIGSYNNHIGVP------------LTLARMPVDV-----DFGI 164
                  L+    +  A   S  N +               L L +M  +         +
Sbjct: 135 AYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEAVANGMTHLV 194

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
            E+        R     +   I     I+P H+        ++    K E+      +  
Sbjct: 195 MEVSSQAYKTKR--VAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIRN---SKQ 249

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQL 276
           + LN     + LL+       +    ++G+S +AD+       L+ +   +    ++V  
Sbjct: 250 MILNRQSDHYHLLRETCEVHQV-PYITYGRS-DADYVVQEGTDLKGFALSAASDVLQV-- 305

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E     +G    +N    +    +  A  + A     V       G+        
Sbjct: 306 ---SGEYQLGILGSFNHENAAAAILAACLAGASREDA---QKVLPTVIIPGRMIVLEKEN 359

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++D  Y  N  S ++   +  Q+ P   GR + V G     G  +QS   D+   L
Sbjct: 360 GAVMIVD--YAHNYLSFQSLSELARQLRPE--GRLLFVTGS---AGGKAQSRRADMGRAL 412

Query: 397 SLYNISHVWL 406
             Y    V+L
Sbjct: 413 GEY-ADKVYL 421


>gi|220904382|ref|YP_002479694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254766049|sp|B8IZT9|MURD_DESDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219868681|gb|ACL49016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 434

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 119/354 (33%), Gaps = 54/354 (15%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++ +A R      ++A+TG+ GKTTT  +    L          G+    +     L+
Sbjct: 106 LAEMELAWRYLENEPVLAVTGTSGKTTTASLAAAMLHEQGYAVFLGGNIGTPLS-EYVLS 164

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               DV   + E+    L           P   ++  I P HL     + E   AK  +F
Sbjct: 165 GHKADV--LVLEISSFQL----QTCSTFCPRAGILLNITPNHLDYHKDMAEYTEAKFRLF 218

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              ++     L       E L++ +   G+K               R+        +   
Sbjct: 219 RCQDEGDLAVL------GESLRSLAARYGLK--------------ARQVYVSDAGRF--- 255

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                        +G H   N         +     + A +AL+ F P   R +R R   
Sbjct: 256 --------SGSSLMGAHNRVNEEAAWQACRLFGVSEENAARALARFAPLPHRLERVRELE 307

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S     +S+K A+          +     V G   + G+L+      LA+
Sbjct: 308 ---GVLFVNDSKCTTVSSLKVALEAF-------DRPVRLVCGGKFKGGDLA-----GLAD 352

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++    +S V L G      + A    + + +  +++     + +S   GDVV+
Sbjct: 353 LVKNR-VSAVALFGAGREHFERAWQGLVPMTWHASLEPAVKHLAASACRGDVVL 405


>gi|307132698|ref|YP_003884714.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
 gi|306530227|gb|ADN00158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
          Length = 460

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 130/373 (34%), Gaps = 38/373 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAI G+ GKTTT  M+T  L          G     +    T++    +  F + E   
Sbjct: 105 VIAIAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGESPFFVVEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I +  
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIVPS 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
            D   + +         + +      +   ++ +K    ++ S  +V L  + + EV  +
Sbjct: 222 HDLHLKQVMGMGCWSEQELV-----GEEGIWKAKKV--TTDASVFQVYLNDQLVGEVSWN 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R          ++ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINAR---RRLELRGTAHGVSVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-MGHCKNELAPALGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V  + DA  +    ++S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 GVFLFQPQHIPWQVAEVADACVQ--PAYWSADIDTLVEMISKTAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLEEFPA 470
             + N LL+   A
Sbjct: 439 GNIHNKLLDALNA 451


>gi|162420115|ref|YP_001608263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
 gi|162352930|gb|ABX86878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
          Length = 460

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 123/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  I+ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L    + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVLLDNNVVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAS---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    ++S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAYWSADIDQLVDMIVKTAQPGDHILVM-SNG 436


>gi|322642363|gb|EFY38968.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
          Length = 453

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 35/397 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 EACVQPAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|297539796|ref|YP_003675565.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
 gi|297259143|gb|ADI30988.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
          Length = 455

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 128/372 (34%), Gaps = 37/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV-----DFG 163
           ++A+ G+ GKTTT  ML   L          IG    + GV   L + P         F 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPKQDAKSISPFF 164

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP  AV+  +   H   F  +  I      +   + + G
Sbjct: 165 VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIEKQFHHLVRTVPQQG 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N        L+          +  FG +        + +    Q   +V  +G+  
Sbjct: 225 LVVSNK----QASLQRVIDKGCWSNLEYFGSADG-----WEVQNVDAQGRFDVVFKGERQ 275

Query: 282 EVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    +G H   N L  +     +      AI+ALS F   +   +R          T
Sbjct: 276 GNLSWDILGEHNRMNALAVIAAARHVGVAPCIAIEALSEFKNVK---RRMEIKGVVNDIT 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLY 399
           + D+ +  +P ++   ++ L      G+ R +AVL    E    +    +   A   SL 
Sbjct: 333 VYDD-FAHHPTAIDTTVAGLRS--KVGKARILAVL----EPRSNTMKLGVMKNALPASLK 385

Query: 400 NISHVWLSGFHVLA-LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               V+  G ++     +AL          E ++ +   I  +   GD V+V  SN  GF
Sbjct: 386 EADLVFCYGANLGWDAAEALSTIKDKASVYEDLNTMVAAIAKAAKPGDYVLVM-SNG-GF 443

Query: 458 Y----RLINLLL 465
                ++++ + 
Sbjct: 444 GGVHQKILDAIK 455


>gi|289177338|gb|ADC84584.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 584

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 145/444 (32%), Gaps = 62/444 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           + A +VV ++ +      +   V  V +    +++  + A L +    + + G+ GKTTT
Sbjct: 154 QDAQVVVYSSAIKPDNPEI---VAAVANGAQLVHRSDILALLMNGKHAVTVAGAHGKTTT 210

Query: 123 KEMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             +L   L           +YA  GS     G  L            + E   S     +
Sbjct: 211 SSLLAHILMHAGTGELADPSYAIGGSIQGPDGTTLDGGHAGKGT-VLVAEADESDGSFAK 269

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL 235
           +      P I +IT     HL ++   E   +A A   + +       +   DD+    +
Sbjct: 270 Y-----HPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVDDAGALAV 321

Query: 236 KAKSHALGIKTIYSFGKS--------KNADFQ--LRKWKQCSEQSW-MEVQLQ------G 278
                    + + ++             A F     + +  +  +    + +        
Sbjct: 322 LRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIPAALVGAD 381

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++ V     G H A+N    +    +L  D + A  A   F    G  +R++       
Sbjct: 382 VALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFL---GANRRFQIRGTVSD 438

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T++D+ Y  +P  + A +    +  P  +     VL     +   +Q F  + A+ LSL
Sbjct: 439 ITVVDD-YAHHPTEITALLKAARRRYPDSQLH---VLFQ-PHLFSRTQFFAQEFADALSL 493

Query: 399 YNISHVWLSGFHVLALKDA-LPR--------------SIHVHYSETMDGLFLFIQSSLVD 443
                V ++G      K +  P+              S  +   + M      +      
Sbjct: 494 --ADDVIVTGIFPAREKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQP 551

Query: 444 GDVVVVKSSNSC-GFYRLINLLLE 466
           GDV+    +        +I  +LE
Sbjct: 552 GDVIFTVGAGDITRMGPVILHVLE 575


>gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
 gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
          Length = 456

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 144/383 (37%), Gaps = 31/383 (8%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+  +++   SL IP+       G  +      A   SK+ I+A+TG+ GKTTT  +LT 
Sbjct: 69  VDRIVISPGISLDIPIVKAAQARGIDVVSEVELAYEVSKSPIVAVTGTNGKTTTTTLLTK 128

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    K     G+  + +        MP D  F + EL    L  I+      RP  A+
Sbjct: 129 VLEGSGKPVHVGGNIGDSLSEVAY--SMPAD-GFLVAELSSYQLETIKHF----RPIGAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  I P HL+    +E   +AK  IFE    T  + LN DD     ++ ++ +  +K   
Sbjct: 182 ILNITPDHLARHKTMENYIAAKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQ 241

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                  A +        ++    +  +  + +    H  G H  +N+L  + +   L  
Sbjct: 242 KKAVENGA-YYADGQCYIAKDGVAKFVIADEDI----HIPGSHNIENILTVIALSHALGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            V+T  + +S FH  E R +R +        T  ++S   N  S+  A+    Q      
Sbjct: 297 PVETIHRIISEFHGVEHRLERVKTI---DGITFYNDSKATNVDSVVKALESFDQ------ 347

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
            + I + G   +M  L           L   +   V   G      + A   +    ++ 
Sbjct: 348 -QVILLAGGHDKMTPLEDFMQ------LVKEHTKAVIFMGEAADRFEMAAKEAGVKPIYR 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           + +M             GD+V++
Sbjct: 401 ALSMKEAVEQGYKLAETGDIVLL 423


>gi|257885178|ref|ZP_05664831.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
 gi|257821030|gb|EEV48164.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
          Length = 453

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 108/302 (35%), Gaps = 37/302 (12%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A+     D  + EL    L  I       RPHIAVIT I  AH+      +E   AK  
Sbjct: 156 VAQEAKPEDKIVMELSSFQLMGITDF----RPHIAVITNIYEAHIDYHGTRKEYVKAKWN 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQS 270
           + + + +   + LN++ S  + L  ++ A     +  F   +          +    +  
Sbjct: 212 LQKNMTEKDYLILNWNQSELQELAQRTKA----RVLPFSTKEVLEGGVYADDYSIYYK-- 265

Query: 271 WMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                 + K ME+      G H  +N L  + +  +     +   + L++FH       R
Sbjct: 266 ------KEKIMEISELGVPGKHNVENALAAISVAKLYGISNEAIRETLNLFHGVP---HR 316

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +           ++S   N  + K A+S            ++ +L    + G       
Sbjct: 317 TQYVGEIQGRKFYNDSKATNILATKMALSGFET-------SKVVLLAGGLDRGNTFDEL- 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                + SL  I  + + G     L DA  ++    +  +++++        +  DGDVV
Sbjct: 369 -----IPSLKGIKAMVVFGQTKEKLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVV 423

Query: 448 VV 449
           ++
Sbjct: 424 LL 425


>gi|198242179|ref|YP_002218299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197936695|gb|ACH74028.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326626105|gb|EGE32450.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 133/399 (33%), Gaps = 39/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A++G+ GKTTT  M T 
Sbjct: 64  LVIISNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVSGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 DACVQ--PAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|161617695|ref|YP_001591660.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367059|gb|ABX70827.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 459

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 132/399 (33%), Gaps = 39/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 DACVQ--PAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|124021741|ref|YP_001016048.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9303]
 gi|166224716|sp|A2C5M3|MURC_PROM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123962027|gb|ABM76783.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 488

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 144/390 (36%), Gaps = 46/390 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVP 150
           L  L++  + A L      IA+ GS GKTTT  +LT  L++  +   A IG    +    
Sbjct: 106 LKILHRSDLLAALIQAQPSIAVAGSHGKTTTSTLLTTLLATTDQDPTAVIGGVVPYYDSN 165

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
               +        + E   S    ++F     +  + VIT +   H  +++ ++E+ +  
Sbjct: 166 GHAGKG----RLLVAEADESDGSLVKF-----QATLGVITNLELDHTDHYADLDELINTM 216

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                G  +   +  N+D    +     +    +KT      S   DF         +Q+
Sbjct: 217 KRFGRGCRR---LLANFDCPILKEHFDATAWWSVKT------SAGVDFAALPICLNGDQT 267

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             ++  QGK M ++     G H   N +  +    +     +   + L+        G+R
Sbjct: 268 IADIYEQGKRMGQITLPMPGLHNLSNAMAAIAACRLAGLSFEDLQQGLADLQ---PPGRR 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVL-------SQISPHGEGRRIAVLGDMCEMG 382
           +          ++D+ Y  +P+ + A +++            P    R +AV        
Sbjct: 325 FDFRGTWEGRQIVDD-YAHHPSEVSATLAMARLIVTSGRSQLPSPPKRILAVF--QPHRY 381

Query: 383 ELSQSFHIDLAEVLSLYNISH---VWLSGFHVL--ALKDALPRSIHVHY-------SETM 430
             +  F  + A  L   +      V+ +G + +  A  ++L  +I + +       +E  
Sbjct: 382 SRTNEFLYEFARALGEADAVLLAPVYSAGENPIQGATSESLANAIRIQHPNLPVAVAENF 441

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC-GFYR 459
           + L L +Q   + GD+V+   + +    +R
Sbjct: 442 NQLTLLVQKHSLKGDLVLAMGAGNINNLWR 471


>gi|218708484|ref|YP_002416105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus LGP32]
 gi|254766064|sp|B7VJ01|MURD_VIBSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218321503|emb|CAV17455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio splendidus
           LGP32]
          Length = 438

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 125/345 (36%), Gaps = 43/345 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +AITGS GK+T  ++  +   +        G+        L      +D D  + E
Sbjct: 107 NKPAVAITGSNGKSTVTDLTGVLAKAAGLNVGVGGNIGIPALDLL-----ELDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+ +   AK  IF   +      +N
Sbjct: 162 LSSFQL----ETTSSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFNNAQ---YAIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            +D        +++      + +FG     +F +             +   GK +     
Sbjct: 215 RED-------KETYPDHSMPLVTFGLDDQ-EFGVATIDGTEW-----LTDNGKPVLPSQD 261

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L++L ++  +  D + +++A        G   R +   N+     +++
Sbjct: 262 LTLVGRHNVANALVSLALLKQVGIDYNKSLEA---LKAYNGLTHRCQVVANKREIKWVND 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L       +G    ++G + +  + S     +L  VL+  +   +
Sbjct: 319 SKATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELKPVLAQLDRVQL 368

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G         +P        +TM  +   I + LV GD+V++
Sbjct: 369 CCFGEDA---AQFMPLHPSAKTFDTMRDIIESISAQLVSGDMVML 410


>gi|308062758|gb|ADO04646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Cuz20]
          Length = 447

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 131/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNSLFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLALEAIAPLLENFYGVKGRLEIVHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    +  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
 gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
          Length = 657

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 144/433 (33%), Gaps = 70/433 (16%)

Query: 14  IQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           +     G+       ++GI+ D  ++   + F    G    G      AV  G   +V +
Sbjct: 68  VDAEWYGVDEDEDVEISGIANDINALLSGDLFVCPVGGEA-GASLAREAVAAGPVAIVAS 126

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +          V  VD+ L  + ++       +  T IA+TG+VGKTTT  ++     
Sbjct: 127 ERVEGVADVPCAVVANVDEALADIARVF-YGDPSTALTAIALTGAVGKTTTSYLVKSVFE 185

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------------------- 166
           +       +GS  N++ V      + +    G++E                         
Sbjct: 186 AADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDRTSTAPGWLAPYRGKY 245

Query: 167 ----------------------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                                       + +S     R  T  +   I  +T+   A  +
Sbjct: 246 EFEELGADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGMNFDIVALTSFEGARKN 305

Query: 199 NFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                 E +S  A++F+ LE  +T    +N D+   +L +  +  + + T  +   +  A
Sbjct: 306 YNGADSEYSSFVADVFKVLENAETQRGVINIDEEDADLCREYASGVPVVTYSTQIGNTAA 365

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D    +      ++ + +     ++EVV   +G HM   +     I       +D     
Sbjct: 366 DVYPARVDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAG 425

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL- 375
           L       GR +     + Q F  L+D      P  ++    V+  +      R I V+ 
Sbjct: 426 LEACEVIPGRMEL--VDMGQDFSVLVDN--ANTPEGIE---RVIQSVRAANCRRVITVIG 478

Query: 376 --GDMC-EMGELS 385
             GDM  E GE +
Sbjct: 479 CEGDMGDERGERA 491


>gi|168464693|ref|ZP_02698596.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632876|gb|EDX51330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 457

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 35/397 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 EACVQPAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|218561393|ref|YP_002394306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|218368162|emb|CAR05971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
          Length = 457

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++    + DF + E            +  V   P  
Sbjct: 124 ILEQCGYK---PGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVAPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + +
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPAHIPWQVAEVAE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +    D ++V  SN  GF     +L++ L ++  A Q
Sbjct: 402 ACVQ--PAHWSGDVDTLADMVVKTAQPSDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 457


>gi|160883882|ref|ZP_02064885.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|237716646|ref|ZP_04547127.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|237720376|ref|ZP_04550857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262405421|ref|ZP_06081971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|293370476|ref|ZP_06617029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|294646202|ref|ZP_06723856.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294809131|ref|ZP_06767849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298480582|ref|ZP_06998779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
 gi|156110612|gb|EDO12357.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|229442629|gb|EEO48420.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|229450127|gb|EEO55918.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262356296|gb|EEZ05386.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|292634468|gb|EFF53004.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|292638420|gb|EFF56784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294443685|gb|EFG12434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086278|emb|CBK67801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           xylanisolvens XB1A]
 gi|298273403|gb|EFI14967.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
          Length = 444

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEDYH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG 278
                   DD       AK         ++  K   A   +   +   +E     ++   
Sbjct: 207 DDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 264 ---QEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVE---HRLEKVARVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 318 IDFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|193215589|ref|YP_001996788.1| Mur ligase middle domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089066|gb|ACF14341.1| Mur ligase middle domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 503

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 44/369 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF- 165
           K T I ++G+ GKTTT  +L   L   K      G     I     L   P   + G+F 
Sbjct: 135 KNTSIVVSGTHGKTTTTSILAWLLDFAKLES---GFLIGGIHANFGLGCRPSGRENGVFV 191

Query: 166 -ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  +  RP IAVI  I   H   F+ + +I  + A     + + G 
Sbjct: 192 TEGDEYDSAFFDKRSKFLHYRPDIAVINNIEFDHADIFASLADIELSFARFVNLIPRNGA 251

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           +    +    E L  K  A       SFG   +A++Q  +    S+ +   + L+ +++ 
Sbjct: 252 LLYASNSLRAEKLSKKCFA----KTESFGLEAHANWQAVEIDYRSDVTEFSI-LKNQTLL 306

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++     G H  +N+L             +     L  F   +   +R    L     T
Sbjct: 307 GKLRSPLFGEHNVRNVLAATAAAMHAGVRFEQIQAGLLAFQSPK---RRLEILLQNDRAT 363

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID+ +  +P +++     L  +     GRRI    +          F  +L+E     +
Sbjct: 364 LIDD-FAHHPTAIR---ETLKAVGQRFPGRRIVACFEPRSNTTTRNFFQKELSECFEHAD 419

Query: 401 ISHVWLSGF-------------HVLALKDALPRSIHVHYS------ET-MDGLFLFIQSS 440
              V + G                 A+  +L     + Y+      E  +  +  F+++ 
Sbjct: 420 ---VVIFGPVNRPERYALEERLDTAAIVKSLEAEGKIAYAIAVPPPENYVKDILAFLKNV 476

Query: 441 LVDGDVVVV 449
              GDV+VV
Sbjct: 477 FQTGDVIVV 485


>gi|254369764|ref|ZP_04985774.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122723|gb|EDO66852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 416

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 125/353 (35%), Gaps = 53/353 (15%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQI----NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    +  +                     G     ++Q+ +       + +   +
Sbjct: 197 --SNDFFVYDVHN---------------------GIKYAGEYQIIRGAIYRNSTKLLDIV 233

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K         G H  +N+++ L I+  L  D++ AI ++  F   +G   R +     
Sbjct: 234 ETK-------LFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKIVKKV 283

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S   N  +  AA++ ++          I +LG + + G+ S      + + L
Sbjct: 284 NGTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----MIKSL 333

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 334 DKY-VKYVYIYGADKEYIESYIKGYYKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|126663232|ref|ZP_01734230.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624890|gb|EAZ95580.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
          Length = 444

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 116/349 (33%), Gaps = 35/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A  + ITGS GKTTT  +    L          G+        +   +     D  + 
Sbjct: 99  TQAKTVGITGSNGKTTTTLLTYHVLKEAGLNVGLAGNIGKSFAWQVAENK----HDIYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L          +P+IA+IT I+P HL  ++       ++K  I +   +   + 
Sbjct: 155 ELSSFQLDG----VFNYKPNIAIITNISPDHLDRYNYDYSLYINSKFRITKNQTEADYLI 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + +D   +     +     K  +S      A+          +++ M   +   +  + 
Sbjct: 211 YDNEDEAIKNWLKNNTIKANKVPFSLTTKPEAE------GGFLDENNMNSTINNDTFTMP 264

Query: 285 HH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H  +N +    +  +L     T  ++L+ F    G   R    L       
Sbjct: 265 INELALEGKHNIKNAMAATAVAQLLNIRKQTIRESLTNFQ---GAEHRLEKVLKIQGVQY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S+  A+  ++  +    G            G    + + +L  ++    +
Sbjct: 322 INDSKATNVNSVFYALDSMTTPTVWIVG------------GVDKGNDYDELMPLVRE-KV 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             +   G     + +     + +    T M       Q     GD V++
Sbjct: 369 KAIVCLGVDNTKISNTFNNVVDIMVETTSMAEAVQIAQRLAEKGDSVLL 417


>gi|89895655|ref|YP_519142.1| hypothetical protein DSY2909 [Desulfitobacterium hafniense Y51]
 gi|122063244|sp|Q24TE4|MURD_DESHY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89335103|dbj|BAE84698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 454

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 94/288 (32%), Gaps = 27/288 (9%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L         +R ++ ++  + P HL     ++   +AKA IFE    +   
Sbjct: 160 VAELSSFQL----EWVDSLRMNVGILLNVTPDHLDRHGTLDNYLAAKARIFEKQSPSDCA 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN+DD+    L     A  +    +   ++    +  +           +  +G+    
Sbjct: 216 ILNWDDARVRALAPHLKARVVFFSPTSLLAEGYGVRGDEVVLAEGGKITPIIARGE---- 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N++  +  V  L    +   + L  F   E    R            I+
Sbjct: 272 -LQLRGSHNLENIMAAIAAVRELGLSWEEITQGLRDFKGVE---HRQEVVGTYEGILFIN 327

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP + + A+    +      G +                FH D  + +    +  
Sbjct: 328 DSKGTNPDASEKALYAFEEPIVLIAGGK-----------NKGLDFH-DFMKTIKK-QVKS 374

Query: 404 VWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
           + L G     ++ A   +   +Y  + T         +    GDVV++
Sbjct: 375 LVLVGTAAAEMEQAAKDTGIQNYLRAGTFAEAVELAIAEAEPGDVVLL 422


>gi|22124579|ref|NP_668002.1| ligase [Yersinia pestis KIM 10]
 gi|45440418|ref|NP_991957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806067|ref|YP_649983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|108813423|ref|YP_649190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|145600815|ref|YP_001164891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|153997296|ref|ZP_02022396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165928167|ref|ZP_02223999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937458|ref|ZP_02226021.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011290|ref|ZP_02232188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213978|ref|ZP_02240013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401240|ref|ZP_02306740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420474|ref|ZP_02312227.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423266|ref|ZP_02315019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218930533|ref|YP_002348408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|229839173|ref|ZP_04459332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896662|ref|ZP_04511829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229899737|ref|ZP_04514878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903899|ref|ZP_04519012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270489112|ref|ZP_06206186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294505353|ref|YP_003569415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|21957381|gb|AAM84253.1|AE013669_3 putative ligase [Yersinia pestis KIM 10]
 gi|45435275|gb|AAS60834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777071|gb|ABG19590.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|108777980|gb|ABG12038.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|115349144|emb|CAL22107.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|145212511|gb|ABP41918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|149288933|gb|EDM39013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165914563|gb|EDR33177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919854|gb|EDR37155.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989674|gb|EDR41975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204773|gb|EDR49253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961280|gb|EDR57301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049265|gb|EDR60673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057436|gb|EDR67182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679669|gb|EEO75772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229687229|gb|EEO79304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695539|gb|EEO85586.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700440|gb|EEO88472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262363418|gb|ACY60139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D106004]
 gi|262367207|gb|ACY63764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D182038]
 gi|270337616|gb|EFA48393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294355812|gb|ADE66153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|320013724|gb|ADV97295.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 460

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 123/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  I+ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L    + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVLLDNNVVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAS---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    ++S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAYWSADIDQLVDMIVKTAQPGDHILVM-SNG 436


>gi|62182860|ref|YP_219277.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168232768|ref|ZP_02657826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168234558|ref|ZP_02659616.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194468881|ref|ZP_03074865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736211|ref|YP_002117356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927013|ref|ZP_03218215.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|224586259|ref|YP_002640058.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130493|gb|AAX68196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455245|gb|EDX44084.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194711713|gb|ACF90934.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291950|gb|EDY31300.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323678|gb|EDZ08873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332986|gb|EDZ19750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|224470787|gb|ACN48617.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322717362|gb|EFZ08933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 35/397 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 EACVQPAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|45658619|ref|YP_002705.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|60390496|sp|Q72NP4|MURD_LEPIC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|45601863|gb|AAS71342.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 463

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 127/376 (33%), Gaps = 49/376 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++    +++      IPV    D+           R   K  II ITG+ GK+TT  ++ 
Sbjct: 72  ILPTHPILSYAADKKIPVVSEIDL----------GRYFFKGKIIGITGTDGKSTTTSLIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L          G+                 +   + EL    L +    +  +   ++
Sbjct: 122 HLLKESFPDLKEGGNLGIPFTSF-----CKESISLAVLELSSYQLED----SSPLHLDVS 172

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIK 245
           V   +A  HL     +E    AK +I +      T+ +       E +K +  +      
Sbjct: 173 VFLNLASDHLERHKTMENYFQAKLKIADLSNSNHTLIV------SEKIKERILNSISYQC 226

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + SFGK+ +++  L +     + S     +         +  G H  +N+  ++     
Sbjct: 227 KLLSFGKTSDSNAFLDENSLKIKTSKFVYDI------SKFYLPGTHNRENLAASILAAEE 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    ++    + +F    G   R++ A  +   + I++S + N  SM A ++    I  
Sbjct: 281 IGGKPESIQTRIPLF---RGLPHRFQIAGEKLGISFINDSKSTNLHSMLAGMATWKNIDQ 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423
                   +LG   +  +L   ++        +  I  V L G      +  +       
Sbjct: 338 TC-----LILGGRPKQEDLKPLYN------FLIKGIGCVVLFGEARATWESGIKNIIGEK 386

Query: 424 VHYSETMDGLFLFIQS 439
           ++  E ++  F   + 
Sbjct: 387 LYCVENLNDTFEIFKK 402


>gi|207721547|ref|YP_002251986.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-me
           so-diaminopimelate ligase protein [Ralstonia
           solanacearum MolK2]
 gi|206586708|emb|CAQ17293.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase protein [Ralstonia solanacearum MolK2]
          Length = 461

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 128/379 (33%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+      DF + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWILQDAGYD---PGFLVGGVPRNFGLSARLTASDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRVL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + + A+        +  FG    A + +       +    +V L G+    V
Sbjct: 219 VNGREESLKRVLARG---CWSEVELFGAEDGAGWAIANL---GDDDSFDVVLDGQVQGRV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 RWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGVTVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 330 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 379

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 380 GADQVFAYGAASGRDALGWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLVM-S 438

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 439 NG-GFGGVHQKLLDALGER 456


>gi|260172405|ref|ZP_05758817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           D2]
 gi|315920701|ref|ZP_07916941.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694576|gb|EFS31411.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 444

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEDYH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG 278
                   DD       AK         ++  K   A   +   +   +E     ++   
Sbjct: 207 DDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 264 ---QEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVE---HRLEKVARVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 318 IDFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|261345646|ref|ZP_05973290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rustigianii DSM 4541]
 gi|282566128|gb|EFB71663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rustigianii DSM 4541]
          Length = 441

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 151/429 (35%), Gaps = 64/429 (14%)

Query: 31  SIDSRSIAPQ-----EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSLSI 83
            +D+R++ P      +      G   D  +++L A  +    G+ +    +  +      
Sbjct: 39  VMDTRAVPPGIDKLPDNVICHSGSLND--EWLLQADLIVASPGIALATKQLQLAANKGIE 96

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  ++                  A I+AITGS GK+T   ++     +   +    G+ 
Sbjct: 97  IVGDIE-----------LFCREVDAPIVAITGSNGKSTVTSLVGEMAKAAGISVGVGGNI 145

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-G 202
                    L+ +       + EL    L      T  ++   A +  I+  H+  +  G
Sbjct: 146 GIP-----ALSLLNQGHSLYVLELSSFQL----ETTSSLQAAAATVLNISEDHMDRYPLG 196

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E+  +AK  I++  +      +N  D     +        +    SFG + N D+    
Sbjct: 197 LEQYRAAKLRIYDNAQH---CIVNAQD-----VLTLPTDHRLNQCTSFGLN-NGDYY--- 244

Query: 263 WKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                +     +  +G+++      H  G H   N L  L +   +    + +I    V 
Sbjct: 245 ----FDTQKRVLIAKGETVLDASEMHLTGQHNYMNALAALALADTVGIPREASI---KVL 297

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G   R++  L       I++S   N  S +AA++ L     H +G    +LG   +
Sbjct: 298 KEYAGLVHRFQLVLFNNGVRWINDSKATNVGSTEAALNGL-----HVDGTIYLLLGGDGK 352

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             + S      L   +S  N   ++  G     L +  P    +  +ETM+     I   
Sbjct: 353 SADFSP-----LKNYISADN-YRLYCFGRDGKQLAELAPEKSVL--TETMEQSLRQIAPL 404

Query: 441 LVDGDVVVV 449
           L  GD+V++
Sbjct: 405 LKTGDMVLL 413


>gi|51594809|ref|YP_069000.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopime late ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|170025980|ref|YP_001722485.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186893818|ref|YP_001870930.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
 gi|51588091|emb|CAH19697.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|169752514|gb|ACA70032.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186696844|gb|ACC87473.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
          Length = 461

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 123/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  I+ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L    + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVLLDNNVVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAS---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    ++S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAYWSADIDQLVDMIVKTAQPGDHILVM-SNG 436


>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
 gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
          Length = 444

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 119/352 (33%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A ++ ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 95  FAGRYTDAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----ATEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I      
Sbjct: 151 DYYIIELSSFQLDNM----YRFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITRNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +   AK         ++  K   A   +   +       +   +   
Sbjct: 207 DDAFIYWNDDPIIKRELAKHGLKAHLYPFASVKEDGAIAYVEDGEI-----EINAPIAFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L      ++   + +   KALS F   E    R     +    
Sbjct: 262 MEQEELALRGTHNLYNSLAAGISANLAGIEKEYIRKALSDFKGVE---HRLEKVCDVRGI 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++   
Sbjct: 319 HFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L     R  + V   +T M             G+ +++
Sbjct: 367 CSALVYL-GLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFRLAKKGETILL 417


>gi|228998694|ref|ZP_04158281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
 gi|228761162|gb|EEM10121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
          Length = 450

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 130/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   +A+   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTTLTFEMLKEGQKHPVIAGNIGT---VACEVAQAAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD   +++   +++ G K ++S      A   +       + +   +  +G+ +
Sbjct: 219 YSVINADD--VDVMALSANSKGQKVLFS------ATKVIEDGACIKDGA---LYFKGEKI 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L  + +  I  L  F   + R +      N+ F+
Sbjct: 268 VEVQDIVLPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         + +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PVILLAGGLDRGNEFDDLIPYF------E 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  +   G     L     ++    +   + ++       S   DGDV+++
Sbjct: 371 HVKAILTYGQTAPKLVRVAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|240948408|ref|ZP_04752786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
 gi|240297234|gb|EER47792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
          Length = 434

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 125/348 (35%), Gaps = 46/348 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   + T             G+          L+ +  D +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLTTEMAKQAGIKVGMGGNIGVP-----ALSLLKSDYELY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A I  I+  H+    + +EE  +AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTYSLKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +N +D              ++ +  F + +NA++  +     +             + 
Sbjct: 210 IIVNGEDPLT------YPTQAVEKLIRFAE-QNAEYSKKNDTLYA--------YDDAVIG 254

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +    I G H   N L  + +        +  +KA        G   R++          
Sbjct: 255 IKQMLIRGRHNEMNALAAMALAEAAGIPREGIVKA---LQIYGGLPHRFQAVATNDGVRW 311

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 312 VNDSKATNVGSTVAALNGL-----EVAGTLYLLLG-----GDGKAADFSELVPLVNKSNI 361

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+ V    TM      I+  L  GD+V++
Sbjct: 362 -VCYCFGQDGEQLAKLSTQSVLV---ATMQEAVEQIRPQLKTGDMVLL 405


>gi|168262553|ref|ZP_02684526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205348947|gb|EDZ35578.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 459

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 139/414 (33%), Gaps = 40/414 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G  + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGAKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
            +     H+S  +D L   +  +   GD ++V  SN  GF     +L++ L+++
Sbjct: 401 EACVQPAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLVKK 452


>gi|121595963|ref|YP_987859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acidovorax
           sp. JS42]
 gi|120608043|gb|ABM43783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax sp.
           JS42]
          Length = 498

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 139/434 (32%), Gaps = 61/434 (14%)

Query: 55  DFILHAVQ----KGAGLVVVNTDMVASIGSLSIPVFGVD----DVLGALNKLAVAARL-- 104
           +FI  A      +G  L  V      S   ++  V         V G L   A A R   
Sbjct: 47  EFIAGAFDETLVQGRALHAVYRSPGLSPNEIAPVVIAARARQISVEGELGLYAQALRELR 106

Query: 105 ---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
                   ++AITG+ GKTT   +  + +    K  A  G+    +   L    +     
Sbjct: 107 AGQGYAPAVLAITGTNGKTTVTSLTGLLVECADKRVAVAGNIGPTLLDTL-AQHIDAGTL 165

Query: 161 -DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  + EL    L  ++       P  A +  I   HL     ++  A AK  IF    +
Sbjct: 166 PEVWVLELSSFQLDGVQ----GFEPTAAAVLNITQDHLDWHGSLQAYAQAKGRIF---GE 218

Query: 220 TGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADF------------- 258
           TG + LN +D+    L     + K     ++   +FG     +  DF             
Sbjct: 219 TGLMVLNREDAEVMALLPPPVRVKLQKPQLRAHVTFGGDMPQRPGDFGIEVVSGMAWLVR 278

Query: 259 --QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +  +  +  +    E+ +Q           G H A N L  L +       +   +  
Sbjct: 279 AHEADETAKRGKAQDAELHIQRLMPADALRIRGRHNAINALAALALAQAAGCPLAPMLYG 338

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   G   R             D+S   N  +  AA++ L       + R + +LG
Sbjct: 339 ---LREYRGEPHRVESVGIVREVEYFDDSKGTNVGATVAALTGLGA-----DRRLVVILG 390

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL 435
              +  + S      LA  ++ Y    V L G     ++ AL    + +  + T+     
Sbjct: 391 GDGKGQDFSP-----LAAPVARY-ARAVVLIGRDAPQIRAALQGCGVPLQDAATLPEAVQ 444

Query: 436 FIQSSLVDGDVVVV 449
                   GD V++
Sbjct: 445 LATQRAHAGDAVLL 458


>gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
 gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
          Length = 506

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 142/430 (33%), Gaps = 59/430 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             +++       +  VPQ         +S DSR+      FF  KG  +    ++  A+ 
Sbjct: 21  LKEIITPTD--WVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAAAID 76

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +G    +  T    +  +  I V  + + +  + +       + +   I ITG+ GKT+ 
Sbjct: 77  QGIQCYISETPYD-NFATYGIIVTDIRETMAVIAQAF-YGHPQEQLVTIGITGTKGKTSC 134

Query: 123 KEMLTIALSS-IKKTYACIGSYNNHIGVP------------LTLARMPVDV-----DFGI 164
                  L+    +  A   S  N +               L L +M  +         +
Sbjct: 135 AYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEAVANGMTHLV 194

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
            E+        R     +   I     I+P H+        ++    K E+      +  
Sbjct: 195 MEVSSQAYKTKR--VAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIRN---SKQ 249

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQL 276
           + LN     + LL+       +    ++G+S +AD+       L+ +   +    ++V  
Sbjct: 250 MILNRQSDHYHLLRETCEVHQV-PYITYGRS-DADYVVQEGADLKGFALSAASDVLQV-- 305

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E     +G    +N    +    +  A  + A     V       G+        
Sbjct: 306 ---SGEYQLGILGSFNHENAAAAILAACLAGASREDA---QKVLPTVIIPGRMIVLEKEN 359

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++D  Y  N  S ++   +  Q+ P   GR + V G     G  +QS   D+   L
Sbjct: 360 GAVMIVD--YAHNYLSFQSLSELARQLRPE--GRLLFVTGS---AGGKAQSRRADMGRAL 412

Query: 397 SLYNISHVWL 406
             Y    V+L
Sbjct: 413 GEY-ADKVYL 421


>gi|167838007|ref|ZP_02464866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 164

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 6/159 (3%)

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +      L  F P +GR +  R AL      T+ID++YNANP SM+AAI VL+  S    
Sbjct: 1   LAAVKAGLEAFAPVKGRLQVARAALGSLAGATMIDDTYNANPDSMRAAIDVLAAQSAP-- 58

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
             R+ V+G+M E+G+   +FH ++        I  ++  G   L   +A   +   H+ +
Sbjct: 59  --RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACEAYGAAAR-HFDD 115

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +   + ++      ++VK S      R+++ L  E
Sbjct: 116 AAALVAALVAANFGARATLLVKGSRFMKMERVVDALANE 154


>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 118/352 (33%), Gaps = 33/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++              G+    +   +       + 
Sbjct: 96  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQSLAYQV----AECNY 151

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +    +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 152 DYYVIELSSFQLDNM----YKFHANIAVLMNITPDHLDRYDYKMQNYIDAKFRIIQNQTD 207

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                   DD    +++ + H  GI    Y F + +         +   ++ +    ++ 
Sbjct: 208 NDAFVFWNDDP---IIREELHKYGIHGQYYPFAEKREDGLAAFSEQ---DKVYFTKPIEF 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N +      +I         +ALS F   E    R         
Sbjct: 262 NMEQEELALTGTHNLFNSMAAGISANIAGIRKSCIREALSDFKGVE---HRLEKVARVRG 318

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  +         + + +LG     G+   + + ++A ++  
Sbjct: 319 VDYINDSKATNVNSCWYALKSMKT-------KTVLILG-----GKDKGNDYNEIAGLVRE 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++L G H   L        + +   ++M            +G+ V++
Sbjct: 367 KCSGLIFL-GLHNEKLHAFFDGFGLPIADVQSMKDAVDAAYRMAKNGETVLL 417


>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
 gi|167698274|gb|EDS14853.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 120/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 95  FAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----AMEKH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   +++   AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG 278
                   DD        K         ++  K   A   +   + + +E     ++   
Sbjct: 207 EDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKEDGAIAYVEDGEVEINEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 264 ---QEELALRGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVE---HRLEKVATVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 318 VQFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRS 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L     R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFKLARKGETVLL 417


>gi|94269090|ref|ZP_01291365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93451350|gb|EAT02218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 126/442 (28%), Gaps = 81/442 (18%)

Query: 52  DGHD---FILHAVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           DGH    F   AV        V  D+          +P+       G L           
Sbjct: 70  DGHSPELFA--AVDAIVVSPGVPLDIPALKEAARAGVPII------GELALAPAYLH--- 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TG+ GK+T   ++   L +        G+    +         P + D+ + E
Sbjct: 119 -TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGGNLGVPLAQY---LAGPQEADWVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP I V+  I+P HL  +   +  A++K  +F     T    LN
Sbjct: 175 VSSFQLD----TAGAFRPQIGVLLNISPDHLDRYPDYQAYAASKWRLFAHQRATDWAVLN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK------------QCSEQSWMEV 274
             D     L   +  +  +    F      + +                      + + V
Sbjct: 231 GADPEIARLAVAAPPVARR--LDFNCQPQPEGRATAIDDEITMTGGAWSASTPAGARLLV 288

Query: 275 QL----------QGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILT 307
            +           G+ + +     G                     QN    +    +  
Sbjct: 289 NVYSLLKQPVTGPGERLPLPTPAAGADPIPPEVYEPGPELAVEPNLQNAQAAILAARLAG 348

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                 +  L  F        R     +       D+S   N  ++ +A+  L+Q     
Sbjct: 349 CSSSAVVAGLRAFKSLP---HRLALVASIAGVDYYDDSKATNIGAVVSALQGLAQ----- 400

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
               I + G + + G+        L   +    +  V L G     +  AL  S+ +  +
Sbjct: 401 --PVILIAGGLDKGGDY------KLLLPVLKEKVRAVVLIGSARARMAAALEGSVPLTQA 452

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           E +             G+ V++
Sbjct: 453 EDLPAAVAKAAELAAPGEAVLL 474


>gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
 gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
          Length = 452

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 91/423 (21%), Positives = 148/423 (34%), Gaps = 46/423 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDG-----HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           DSR   P     A++     G      DF   A+ + A  +V++  +  S  ++ +    
Sbjct: 41  DSREAPPG--LAALQ-EQVPGVAVRLGDF-EVALMQQAERLVISPGVALSEPAIQVAQAR 96

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              VLG +   A  A    +A +IAITGS GK+T   ++        K     G+     
Sbjct: 97  GIPVLGDIELFAYWA----QAPVIAITGSNGKSTVTVLVEAMARQAGKKVLSGGNLGLP- 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
              L L   PV  D  + EL    L      T  +    A I  I+P H+  +  +E   
Sbjct: 152 --ALELLEKPVP-DLYVLELSSFQL----ETTSTLNAVAACILNISPDHMDRYPNLEAYV 204

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK  ++ G   TG + +N DD     L            ++ G     ++ LR+    +
Sbjct: 205 QAKGRVYHG---TGAMVINADDVQVAGLAQPERHCLR---FTLGAPAADEYGLRERAGET 258

Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +   E+ L  +        +G H   N L  L +           +  LS      G 
Sbjct: 259 WLARGHELLLPARQF----PLVGRHNLANALAALALGEAAGLP---QLAMLSALREFRGL 311

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R             ++S   N  +  AAI  L     H +G+ + + G + +  + S 
Sbjct: 312 PHRCEWVAQANGVDWYNDSKGTNVGATVAAIEGL-----HCQGKLVLIAGGVGKGADFSP 366

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                L   LS      V L G     L+ AL  S+ ++    M        +    GD 
Sbjct: 367 -----LCAPLSRR-ARAVVLMGQDAPRLEAALANSVPLYQVNDMGEAVNKASALAEPGDS 420

Query: 447 VVV 449
           V++
Sbjct: 421 VLL 423


>gi|227538299|ref|ZP_03968348.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241814|gb|EEI91829.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 457

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 106/350 (30%), Gaps = 36/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +  ITGS GK+TT  +    L          G+      + +         D  + 
Sbjct: 111 TDARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGNIGRSFALQV----AQEQFDVYVL 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
           E+    L ++    +  R  +AVI  I P HL  +   +E    +K  +           
Sbjct: 167 EISSFMLDDM----YQFRADVAVILNITPDHLDRYDHKMENYVDSKFRMIRNQTANDYFI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280
              DD        + H        +  +  N    L +         +     +  +  S
Sbjct: 223 YCLDDEETVKGLERHHTEATIWPMTQEQVINPGAYLDQEKNIIINTPKGEQFIMNTEDLS 282

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++      G H   N +    +  +      +  +++S +        R       G   
Sbjct: 283 LQ------GKHNVYNNMAAGLVAKVQELRNRSMQESMSSYVNIP---HRLEHVACIGGVN 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S+  A+   S        + + ++G + +  +       ++   L    
Sbjct: 334 YINDSKATNVNSVWYALESFS-------PQIVLIMGGVDKGNDY------EMLRDLVRSK 380

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  +   G     + ++      V   S +M             GD V++
Sbjct: 381 VRAIICIGKDNTRIHESFEEDTDVIVNSSSMKDAVEIASHIAQKGDTVLL 430


>gi|262273815|ref|ZP_06051628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
 gi|262222230|gb|EEY73542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
          Length = 445

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 115/348 (33%), Gaps = 45/348 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              +A +I ITGS GK+T   ++    ++        G+          L  +    D  
Sbjct: 103 RDVEAPVIGITGSNGKSTVTSLVGEMANAAGINVGVGGNIGF-----AALDMLANGHDLY 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +    AV   ++  H+  + G+ +   AK  IF+        
Sbjct: 158 VLELSSFQL----ETTSSLNLDAAVFLNLSEDHMDRYEGMADYRDAKLRIFDQ---AKLA 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD             G     SFG S        ++    +     +  +G+ +  
Sbjct: 211 VWNRDD--------GQTKSGSGAAVSFGFSSG------EYTLTEQGGAEWLTAKGEPVMA 256

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V     +G H   N L  + +      D               G   R +  +       
Sbjct: 257 VSEIALVGRHNVANCLAAMALADAAGIDRKA---QRKAMREYRGLPHRCQQVVEHNGVLW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   NPAS  AA+  L        GR   ++G   +  + S      L  VL   N+
Sbjct: 314 VNDSKATNPASTLAALDGL-----QLAGRLHLLVGGDGKGADFSL-----LKPVLDTLNV 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + ++  G    A    + + +    ++TM         +   GD+V++
Sbjct: 364 T-LYCYGRDRQAFTSLVEKPV---VTDTMQQAMDIAAENANPGDMVLL 407


>gi|258649001|ref|ZP_05736470.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850618|gb|EEX70487.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
          Length = 446

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 128/409 (31%), Gaps = 55/409 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             MV ++    IPV          +++  A R   +A  I ITGS GKTTT  ++   L 
Sbjct: 75  APMVRALREKGIPVI---------SEIEFAGRYT-QARTICITGSNGKTTTTSLIYHILQ 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                    G+      + +       DVD+ + EL    L ++       R  IAV+  
Sbjct: 125 KAGYNVGLAGNIGRSFALQV----AEGDVDWYVIELSSFQLDDM----FRFRADIAVLLN 176

Query: 192 IAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +   +E   ++K  I +      T      D        +         ++ 
Sbjct: 177 ITPDHLDRYDFKMENYVASKMRILQNQRPQDTFIYWAGDEHIPTQLQQLAPASRLLAFAD 236

Query: 251 GKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                A           +Q +   + L            G H  +N +           D
Sbjct: 237 APEAGAAAYAENGLLTIDQPTPFTMAL------SELSLPGRHNLRNSMAAALAAQSAGVD 290

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T    L+ F        R     +      +++S   N  +   A+  +         
Sbjct: 291 EATIRAGLADFPGVP---HRLEKVADVAGVHYVNDSKATNVDACYCALESMQT------- 340

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             + +LG     G    + + ++A ++     + V+L G     L+D     ++ +  + 
Sbjct: 341 PVVLILG-----GTDKGNDYNEIAPLVREKCRALVFL-GADNSKLQDFFANFNLPISDTH 394

Query: 429 TMDGLFLFIQSSLVDGDVVVV------------KSSNSCGFYRLINLLL 465
           +M        ++ + GD V++                   F  L+  + 
Sbjct: 395 SMKDCVAACAAAALPGDTVLLSPCCASFDLFRNMGDRGDQFKALVRAMQ 443


>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
 gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
          Length = 455

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 118/349 (33%), Gaps = 34/349 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A I+A+TG+ GKTTT  ++        +     G+          L   P DV   + E
Sbjct: 107 RAPIVAVTGTNGKTTTTSLIGYIFRRAGRRTIVAGNIGYPFSD-YVLDTTPDDVV--VLE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           +    L  +       RP ++V+  I P HL  ++    E A +K  IF        +  
Sbjct: 164 VSSFQLDHVATF----RPRVSVLLNITPDHLDRYNYNFNEYAQSKFRIFANQRGEDVLVY 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----M 281
           N+DD    +   ++H      +  F +                  ++ ++++ +      
Sbjct: 220 NHDDELIRMAAERAHRKRGLRVLGFSQRTELPAGA-----FVRDGYLILRIEQQEEVLMH 274

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L       ++    D   ++L+ F        R            
Sbjct: 275 ANELALRGRHNLYNSLAAAVAARVMEVRNDVVRESLASFEGVP---HRLEFVRELDGVRY 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  ++  A+   S          + + G   +  + S      + + L    +
Sbjct: 332 VNDSKATNVNAVWYALESFS-------CPIVLIAGGRDKGNDYS------VLKPLVKEKV 378

Query: 402 SHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G      L++  P   H   +++M+    + +     GDVV++
Sbjct: 379 RALVAIGESADKLLRELGPLVPHAVKAQSMEEAIQYARVFAEPGDVVLL 427


>gi|86140622|ref|ZP_01059181.1| UDP-N-acetylmuramate--L-alanine ligase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832564|gb|EAQ51013.1| UDP-N-acetylmuramate--L-alanine ligase [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 114/312 (36%), Gaps = 35/312 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   L  +   +A+ G+ GKTTT  ML   ++  K    A +G    +    L    
Sbjct: 102 RAEVLGWLTQEKFCLAVAGTHGKTTTSAMLGHLMAFCKLPVTAFLGGIAENYQSNL---- 157

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    +  + E        ++     + P+IA IT++   HL  +   E +  +  +   
Sbjct: 158 IQHGEEIVVVEADEFDRSFMQ-----LYPNIAAITSMDADHLDIYGDAEALHKSFRDFAA 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +++ G +F+                       + G   ++ +     K  +     +++
Sbjct: 213 QVKEDGVLFV--------------KNGLPLDGITVGIEDDSVYAALNIKIENGAYHFDLK 258

Query: 276 LQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                +E  V +  G H   N    L +        D   KAL  F   +G  +R+   +
Sbjct: 259 HPDGLIEDLVLNLPGRHNLSNATTALAMALHYGCPADKLAKALFAF---KGVNRRFTYRI 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +    LID+ Y  +PA + A  S + ++ P+   R +AV      +   ++ F  D A 
Sbjct: 316 KKANEVLIDD-YAHHPAEINAVHSAVREMYPNK--RVLAVF--QPHLFSRTRDFMEDFA- 369

Query: 395 VLSLYNISHVWL 406
             SL     + L
Sbjct: 370 -ASLAQFDELLL 380


>gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 540

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 136/390 (34%), Gaps = 53/390 (13%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN----HIGV 149
           AL+++A A     +A ++AITG+ GKTTT  +         K  A  G+ +      +  
Sbjct: 134 ALSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGKKVAVAGNISPAALEKLMN 193

Query: 150 PLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            L LA   VD+ D  + EL    L      TH +    A +  I   HL     ++  A 
Sbjct: 194 CLDLADQIVDMSDVWVLELSSFQL----VYTHTLNATAATVLNITQDHLDWHGDMQAYAE 249

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+ IF          LN DDS    L +    +  K+I +FG ++  +      +    
Sbjct: 250 AKSRIF---GADTVCILNRDDSLVMGLLSDEQKV-DKSIVTFGSNRPDEQGAFGIEHDLR 305

Query: 269 QSWME-----------------------------VQLQGKSMEVVHHGIGYHMAQNMLMT 299
              ++                             ++L+           G H A N L  
Sbjct: 306 AGGIDWLVWAEVDEDVEPKSKRRRKSAVVEDDEPLRLKRLIPADALRIRGRHNALNALAA 365

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L +   +   ++  +  L  +H   G   R +          +D+S   N  +  AA++ 
Sbjct: 366 LALARAVNLPMNVLLHGLRDYH---GEPHRVQSIAIVRDVEYVDDSKGTNVGATVAALNG 422

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L         R   + G   +  + S           +L  +   ++ G   +A+ +AL 
Sbjct: 423 LGN--NELGKRIWLIAGGDGKGQDFSP------LREPALRFVKGAFVIGKDGVAIGEALG 474

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             I +     +      +    + GD+V++
Sbjct: 475 AGIPITNCGDLVSAVQAVAGQAISGDIVLL 504


>gi|320335715|ref|YP_004172426.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319757004|gb|ADV68761.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 919

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 129/393 (32%), Gaps = 64/393 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  +IAITG+ GK+TT  M+   L    K      S   ++   L +             
Sbjct: 511 RIPVIAITGTNGKSTTSRMVAHILKHAGKVVGLTTSNGIYVDGELIMGGDTTGPKSAKVI 570

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
               +V+  + E   +  G +R      R  +  +  I P HL       +E++A  K+ 
Sbjct: 571 LSDPNVEVAVLE--TARGGILREGLGFDRADVGAVLNIQPDHLGMKGIETVEDLAYVKSL 628

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E +  TGT  LN DD     ++ K+      +I  F    +        +   E    
Sbjct: 629 VVEVVTDTGTSVLNADDPLTVNMQRKAGG----SITFFSMQDSNACSEHLQRHIDEGGTA 684

Query: 273 EVQ--------------------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            V+                    ++ + +     G       N L  +G+      ++  
Sbjct: 685 VVREATLLGDELVLYRAGHRYPVIRAREIPATLGGYARVNIANALAAIGVAVGAGVELPV 744

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              AL  F          R  L +G    +   Y  NP  ++    ++  + P  +GR I
Sbjct: 745 IRAALGSFS-TSFEQSPGRLNLYEGHPFRVLLDYAHNPDGLRPLAELVPFLRPA-KGRVI 802

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDAL---- 418
            V G     G+       ++  +L+      + L           G      ++      
Sbjct: 803 GVFGV---AGDRRDVDIREMGAILAGM-FDLLILREDTDRRGRAPGEGAELTREGALAAG 858

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             P  I V   E  D +   +++    GD+VV+
Sbjct: 859 MNPEQIQVILHE-PDAIDAALRAG-QAGDLVVI 889


>gi|307265454|ref|ZP_07547010.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919568|gb|EFN49786.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 819

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 136/410 (33%), Gaps = 50/410 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILHAV-- 61
           +   D+ +  Q   +         GI+ID +  I P     A++     G D     +  
Sbjct: 365 FDLEDIPKKGQKVFLRESANLSTGGIAIDKTDDIHPYNIEIAVRAAKAIGLDIAGIDITM 424

Query: 62  ---------QKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
                    + GA + +  +    +    S   P     +V  A+  +      ++   I
Sbjct: 425 EDIKKPLTKENGAIIEINASPGIRMHHYPSKGKP----RNVAKAIVDMLFPKGSKATIPI 480

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLARMPVDV 160
           I+ITG+ GKTT   M    L +   T     +   +I            P +      D 
Sbjct: 481 ISITGTNGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADK 540

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLE 218
           +     L  +  G IR         + VIT I+  HL       +E++A  KA + E ++
Sbjct: 541 NIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVK 600

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQC 266
           + G   LN DD     L  ++       I  F +  N                ++     
Sbjct: 601 EDGYSVLNADDPMTTYLAQRAKG----KIIYFSRYDNNLTVKKHIEKGGIAVYVKDGVIV 656

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +   ++ + +     G   +  +N L  +     +   V+   K +  F+     
Sbjct: 657 IANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFYCDTTH 716

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   N G F ++ + Y  N A +K+ I    ++  +   R I V+G
Sbjct: 717 NPGRFNLFNVGNFRVLVD-YGHNIAGIKSVIEAAQKLDAN---RLIGVIG 762


>gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
 gi|259509786|sp|C3KVT7|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
          Length = 458

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNGMENEA----LGDVLKFSL-------VEKVYNGAYLSNNKLTMQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++         E   I + G      +    F     + L+       
Sbjct: 333 SIASSPSRTLAGLNSF-------ERPVILIAGG----YDKKIPF-----KPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  +        I +    +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9312]
 gi|118595673|sp|Q319C4|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 468

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 130/355 (36%), Gaps = 34/355 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++ VA  +  +   I ITG+ GKTT   +L+  L   K      G+    +      ++
Sbjct: 108 GEINVAWEILKETNWIGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTPL-CKYAYSK 166

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               +D+ + EL    +     ++  V+P+I + TT    HL     +E   + K  +  
Sbjct: 167 KYEKIDWVVAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL-- 220

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            LEK+     NYDD   + L+    +L      +    K+   Q   W    +     ++
Sbjct: 221 -LEKSDFRIYNYDD---KNLRNHYSSLSKGVWITTSLDKSNFIQCDYWI---DDQAFIIE 273

Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +  ++ H  + G H  QN+L+ +     +         +LS +        R     
Sbjct: 274 RGKRLFKLEHFSLKGIHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLP---HRMETIY 330

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 +I++S   N  S  A I+ +       EG+ I + G   +  + S+       +
Sbjct: 331 KNNDLEIINDSKATNFDSSIAGINSI-------EGQIIIISGGRLKGNKYSEW-----VQ 378

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDV 446
           VL    +  ++L G     LK AL        +     +  L  F+   L +  V
Sbjct: 379 VLKQ-KVKCIFLFGESSKVLKMALINEGFKKDIFEFSELKELLNFVFHYLQNNKV 432


>gi|313887151|ref|ZP_07820847.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923380|gb|EFR34193.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 457

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 116/358 (32%), Gaps = 34/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +      +      +A+ GS GKTTT  ML+  L   ++   C            +  
Sbjct: 94  LKRAEALGVIAENYRTLAVAGSHGKTTTTNMLSHILDGAQEV-GCTAFIGGLAVDTGSNF 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E       E       + P++AV+T+    HL  +       +   +  
Sbjct: 153 IYSDHSDLLVVEA-----DEYDRSFLHLNPYMAVVTSTDADHLDIYGDYAGYLAGFEQFC 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +E  GT+ +       E L  K H        ++G +  AD               + 
Sbjct: 208 SQIEPGGTLLM------KEGLPIKPHLAEGVRTLTYGHAPTADAYYDHVTVGDGTIRFDW 261

Query: 275 QLQ--GKSMEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                G  +E V  G+      +N    + I  +     D  ++ +  F    G  +R+ 
Sbjct: 262 HYPEAGLHLEQVRLGVPVRTNLENATAAMTIAYLNGVAPDDIVRGVESF---RGTKRRFE 318

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L      LID+ Y  +P  + ++I  + +I    +   +A+      +   +  F+ D
Sbjct: 319 LVLQTDRHLLIDD-YAHHPVELDSSIRSIKEIYGSED--VLAIF--QPHLYSRTADFYKD 373

Query: 392 LAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            A+         VL +Y      + G     +   L       +  T + L   ++  
Sbjct: 374 FAQSLSHVDQVIVLDIYPAREEPMPGVTSELIYKELTAPHR--WLCTKEELLPLLRQI 429


>gi|261206518|ref|ZP_05921218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289565428|ref|ZP_06445877.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|294614711|ref|ZP_06694613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|294618991|ref|ZP_06698486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
 gi|260079228|gb|EEW66919.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289162757|gb|EFD10608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|291592449|gb|EFF24056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|291594652|gb|EFF26034.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
          Length = 453

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 35/301 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A+     D  + EL    L  I       RPHIAVIT I  AH+      +E   AK  
Sbjct: 156 VAQEAKPEDKIVMELSSFQLMGITDF----RPHIAVITNIYEAHIDYHGTRKEYVKAKWN 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + + + +   + LN++ S  + L  ++ A     +  F   +     L       + S  
Sbjct: 212 LQKNMTEKDYLILNWNQSELQELAQRTKA----RVLPFSTKE----VLEDGVYADDYS-- 261

Query: 273 EVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  + + +  +      G H  +N L  + +  +     +   + L  FH       R 
Sbjct: 262 -IYYKKEKIMEISELGVPGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVP---HRT 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + K A+S            ++ +L    + G        
Sbjct: 318 QYVGEIQGRKFYNDSKATNILATKMALSGFETT-------KVVLLAGGLDRGNTFDEL-- 368

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
               + SL  I  + + G     L DA  ++    +  +++++        +  DGDVV+
Sbjct: 369 ----IPSLKGIKAMVVFGQTKEKLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVL 424

Query: 449 V 449
           +
Sbjct: 425 L 425


>gi|256751471|ref|ZP_05492349.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749690|gb|EEU62716.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 819

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 106/312 (33%), Gaps = 32/312 (10%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V  A+  +      ++   II+ITG+ GKTT   M    L +   T     +   +I 
Sbjct: 459 RNVAKAIVDMLFPKGSKATIPIISITGTNGKTTVTRMTAHILKTYGYTVGMTCTDGIYID 518

Query: 149 ----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL- 197
                      P +      D +     L  +  G IR         + VIT I+  HL 
Sbjct: 519 DTCVYKGDNTGPKSAKTCLADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLG 578

Query: 198 -SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                 +E++A  KA + E +++ G   LN DD     L  ++       I  F    N 
Sbjct: 579 IDGIETLEDLAFVKALVVEAVKEDGYSVLNADDPMTPYLAQRAKG----KIIYFSMYDNN 634

Query: 257 ------------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                          ++          +   ++ + +     G   +  +N L  +    
Sbjct: 635 LTVKKHIEKGGIAVYVKDGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASY 694

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +   ++   K +  F+             N G F ++ + Y  N A +K+ I    ++ 
Sbjct: 695 GVKVPINIIAKGIKTFYCDTTHNPGRFNLFNVGNFRVLVD-YGHNIAGIKSVIEAAQKLD 753

Query: 365 PHGEGRRIAVLG 376
            +   R I V+G
Sbjct: 754 AN---RLIGVIG 762


>gi|238757553|ref|ZP_04618738.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
 gi|238704315|gb|EEP96847.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
          Length = 461

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 133/378 (35%), Gaps = 44/378 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLTWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK     + S  EV L  + + EV  
Sbjct: 221 DNDNPLKQVMAMGCWSEQELV-----GETGSWFARKVAV--DASVFEVFLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L         V+ + +A  +    H+S  +D L   I  + + GD ++V  SN  G
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAHWSADIDTLVDMITKTALPGDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEEFPA 470
           F     +L+  L ++   
Sbjct: 438 FGGIHDKLLTALSKKAEQ 455


>gi|207859563|ref|YP_002246214.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711366|emb|CAR35744.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 457

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 132/399 (33%), Gaps = 39/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 DACVQ--PAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|308272541|emb|CBX29145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 481

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 118/299 (39%), Gaps = 23/299 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IA++T+I   H   F  +E +    + + E +    ++ +   D+  + L   S   
Sbjct: 190 DPLIAILTSIEFDHADIFRDLEHVKETFSRMIEKISPGSSLIVFDRDTNIKSLIRNSSC- 248

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
               I  +GK+ ++D++L  ++     ++ EV  +GK+        IG H   N L  + 
Sbjct: 249 ---KIEKYGKNSDSDWKLGSFRVEPPWTFFEVMKKGKAFGSFKTKLIGEHNLLNALSVIA 305

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L   VDT   AL  F   +   +R      +   T++D+ +  +P ++K  I  + 
Sbjct: 306 AADNLKVPVDTIHDALETFEGVK---RRQEIRGERKGITVMDD-FAHHPTAVKETIKAVR 361

Query: 362 QISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
              P  +GR IAV        M ++ +       D A+++ +     +    F      +
Sbjct: 362 PFYP--DGRVIAVFEPRTNSSMRKVFQDVYPLSFDKADIVCISKPPLLGKIPFDERFSSE 419

Query: 417 ALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            L +         ++      +  FI  +   GD+V++  SN  GF  +   LL    A
Sbjct: 420 KLVQDLKIMGKDAYFFSNTQAIIDFIVKAGKSGDLVLIM-SNG-GFENIHERLLAALGA 476


>gi|299821556|ref|ZP_07053444.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
 gi|299817221|gb|EFI84457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
          Length = 455

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 101/286 (35%), Gaps = 31/286 (10%)

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHI+VIT I  AHL   +  +E   AK +I +       + 
Sbjct: 167 MELSSFQLMGIDTF----HPHISVITNIYEAHLDYHADRDEYVQAKWKIQKNQTADDILV 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N+D    + L  K+ A     I  F  ++     L  + Q  +  + + ++ G+  +++
Sbjct: 223 INWDQEELKTLTKKTKA----QIVPFSTTQK--LGLGSYVQNGKLMFND-EIVGERADIL 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L ++ +   +    +  ++ L  F        R +           ++
Sbjct: 276 LP--GDHNLENILASIAVAKTIGVSNEQIMQVLKTFKGVP---HRTQFVTEWHGRKFYND 330

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + ++A+    +         + +L    + G            +    ++  +
Sbjct: 331 SKATNILATQSALKGFKE--------PVVLLAGGLDRGNEFDEL------LPFFQHVKAL 376

Query: 405 WLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     +     +    V Y E ++        +   GDV+++
Sbjct: 377 VCFGETAEKIGRIGKQSGTEVFYVENVEAAVPVAFEASSPGDVILL 422


>gi|332300479|ref|YP_004442400.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177542|gb|AEE13232.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 457

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 116/358 (32%), Gaps = 34/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +      +      +A+ GS GKTTT  ML+  L   ++   C            +  
Sbjct: 94  LKRAEALGVIAENYRTLAVAGSHGKTTTTNMLSHILDGAQEV-GCTAFIGGLAVDTGSNF 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E       E       + P++AV+T+    HL  +       +   +  
Sbjct: 153 IYSDHSDLLVVEA-----DEYDRSFLHLNPYMAVVTSTDADHLDIYGDYAGYLAGFEQFC 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +E  GT+ +       E L  K H        ++G +  AD               + 
Sbjct: 208 SQIEPEGTLLM------KEGLPIKPHLAEGVRTLTYGHAPTADAYYDHVTVGDGTIRFDW 261

Query: 275 QLQ--GKSMEVVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                G  +E V  G+      +N    + I  +     D  ++ +  F    G  +R+ 
Sbjct: 262 HYPEAGLHLEQVRLGVPVRTNLENATAAMTIAYLNGVAPDDIVRGVESF---RGTKRRFE 318

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L      LID+ Y  +P  + ++I  + +I    +   +A+      +   +  F+ +
Sbjct: 319 LVLQTDRHLLIDD-YAHHPVELDSSIRSIKEIYGSED--VLAIF--QPHLYSRTADFYKE 373

Query: 392 LAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            A+         VL +Y      + G     +   L       +  T + L   ++  
Sbjct: 374 FAQSLSHVDQVIVLDIYPAREEPMPGVTSELIYKELTAPHR--WLCTKEELLPLLRQI 429


>gi|157165282|ref|YP_001466906.1| Mur ligase middle domain-containing protein [Campylobacter concisus
           13826]
 gi|112800277|gb|EAT97621.1| Mur ligase family protein [Campylobacter concisus 13826]
          Length = 474

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 130/360 (36%), Gaps = 42/360 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL KL        +  II IT S GKT+ K  L   L      Y    S N   G+   
Sbjct: 146 KALKKLGA----SKELKIILITASYGKTSIKNFLFEILKDSFVCYKTPRSVNTMAGIIKD 201

Query: 153 LAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +   +       I E G    G+I  +T  + P I ++  I   H+  F  ++ I + K 
Sbjct: 202 INENLSEQTQIYIAEAGARLKGDILEITKFLNPQIVIVGEIGAQHIEYFKTLDNIRTTKL 261

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+                L + +     + I  + +S      L+      +   
Sbjct: 262 ---EALQSERL--------QRAFLHSSTKKEPRENIEIYDES------LKDINANLDGIS 304

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
               L GK+       +G   A N+ + + +   L    +    ALS     E R  +  
Sbjct: 305 FT--LDGKNY--ASPLLGKFNATNLAVCIKVARYLKMSDEAINSALSKMKNVEHRLSKIE 360

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G   +ID+S+N N + M A+  ++S  +    GR++ +   + E        + +
Sbjct: 361 ----AGGKLIIDDSFNGNFSGMSASYELVSTYA----GRKVLLTPGIVESDAEQ---NAN 409

Query: 392 LAEVLSLYNISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           LA+V++      V ++        LK  +   I +   +  + +   +  +   GD+++ 
Sbjct: 410 LAKVINEI-FDLVIITSSLNAEVLLKHIVKPKIII--LKDKNKMQEILAQNTHAGDLILF 466


>gi|116071782|ref|ZP_01469050.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. BL107]
 gi|116065405|gb|EAU71163.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. BL107]
          Length = 448

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 140/408 (34%), Gaps = 54/408 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +  +  + ++   D+L AL               IA+ GS GKTTT  ++
Sbjct: 63  AIPDTNPELQNARAHQLAIWHRSDLLAALIDQQA---------SIAVAGSHGKTTTSTLI 113

Query: 127 TIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T  L    +   A IG     +G      +        + E   S    ++F      P 
Sbjct: 114 TTLLIEAGEDPTAVIGGVVPCLGSNGHSGQG----RLLVAEADESDGSLVKF-----SPS 164

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +   H  ++ G++++ S       G E+   +  NYDD   +     +      
Sbjct: 165 LGVITNLELDHTDHYKGLDDLISTLQRFGRGCER---LIANYDDPILQEHFEPTAW---- 217

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +S+N  F     +   ++        G ++ +      G H   N    L    
Sbjct: 218 --WSNQQSENIAFAALPLQLDGDRCTARFYENGSAVGDFTLPMAGLHNLSNATAALAACR 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +  +K L+        G+R+          ++D+ Y  +P+ ++A +++   + 
Sbjct: 276 MEGVPFEALVKGLAQLQAP---GRRFDLRGTWEGRHIVDD-YAHHPSEVRATLTMAQLMV 331

Query: 365 -------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSG 408
                  P    R +AV          +Q F    AE L          +Y      + G
Sbjct: 332 SSGRSPLPSSPQRLVAVF--QPHRFSRTQQFFEAFAEALQNCDALLLAPVYAAGEQTIPG 389

Query: 409 FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
               AL     +L   + +  ++ +D L   ++      D+V+   + 
Sbjct: 390 VCSNALAQRIRSLRPDLEIAVADDLDQLTDLVKQRSRPDDLVLAMGAG 437


>gi|213857929|ref|ZP_03384900.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 242

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 20/245 (8%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGL 217
              + I E   S    +      ++P +A++T I   H+       E +          L
Sbjct: 10  HSRYLIAEADESDASFLH-----LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNL 64

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     L  +      +   ++G S++AD ++  ++Q   Q    +  Q
Sbjct: 65  PFYGRAVMCVDDPVIRELLPRV----GRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQ 120

Query: 278 GK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-----RYR 331
           G   + V  +  G H A N    + + +    D D  ++AL  F     R          
Sbjct: 121 GMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLE 180

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +    ++ + Y  +P  + A I       P        V+         ++  + D
Sbjct: 181 PVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKN----LVMLFQPHRYTRTRDLYDD 236

Query: 392 LAEVL 396
            A VL
Sbjct: 237 FANVL 241


>gi|222151005|ref|YP_002560158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
 gi|254766053|sp|B9EB51|MURD_MACCJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222120127|dbj|BAH17462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 111/344 (32%), Gaps = 42/344 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITG+ GKTT   ++     + +      G+      V   +A+     D  + EL  
Sbjct: 113 ILGITGTNGKTTVTSLIGDMFKAHEHAGLLCGNIG---FVASKVAQNAGAHDTLVMELSS 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I+      RPHIA+IT I  AHL      +    AK +I +       +  N   
Sbjct: 170 FQLMGIQEF----RPHIALITNIYSAHLDYHGNQQNYIDAKMQITKNQTSEDYLIFN--- 222

Query: 230 SFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              +  +       IK  +  F   +  +       +        + ++           
Sbjct: 223 ---DKQRTLLQNYNIKSKVVYFSTDEKVEGAYIDQNKVYFYDEFIIDVKD------IVLP 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+L ++    +   D    I         EG   R +           ++S   
Sbjct: 274 GVHNLENVLASIAAAKLAGID---NIHICDTLKTFEGIKHRLQFVTETDGVKYYNDSKAT 330

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWL 406
           N  +   A+    Q   H        L    + G   +    HID        ++ H+++
Sbjct: 331 NTLATSFALDSFHQ-PTHW-------LAGGLDRGNGFEELDTHID--------HVKHMYI 374

Query: 407 SGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L   A    I     + +    L   S +  G+VV++
Sbjct: 375 FGETTEKLTAFAAQHHIPYTICKDVTDAVLKTASYVERGEVVLL 418


>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254766040|sp|B8D916|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766041|sp|B8D7C1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 440

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 135/350 (38%), Gaps = 43/350 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 II+ITG+ GK+T   M+              G+    +     L  +  + D  
Sbjct: 102 REVTCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPV-----LEILDKEADLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++  IAVI  I+  H++ + +G ++  + K  ++   E    
Sbjct: 157 IIELSSFQLEN----TFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAE---I 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N +D   + L         K   SFG ++ +D+++     CS+ +   +  + K + 
Sbjct: 210 CIINSNDKIEKSLIH----SKNKKWISFGTNR-SDYRI-----CSKSNDPILFFKNKKIL 259

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   GYH   N+L++L I   +    + AI  L  F        R++   N+    
Sbjct: 260 NTSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFSNLP---HRFQIIKNEKGVR 316

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLY 399
            I++S + N  S + A++ +           I +L     +G  S+S + ++ + +    
Sbjct: 317 WINDSKSTNVNSTQVALNSIKTTG------TIRLL-----LGGDSKSANFNILKNIFRTL 365

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            I  ++  G   + L     +     Y E +    + I   +  GD V++
Sbjct: 366 KI-KIYCFGRDGIKLSKICEKKS--IYVENLKKAVILISKQVKSGDTVLL 412


>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11133470|sp|P57313|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
           [imported] - Buchnera sp. (strain APS)
 gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 440

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 135/350 (38%), Gaps = 43/350 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 II+ITG+ GK+T   M+              G+    +     L  +  + D  
Sbjct: 102 REVTCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPV-----LEILDKEADLY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I EL    L      T  ++  IAVI  I+  H++ + +G ++  + K  ++   E    
Sbjct: 157 IIELSSFQLEN----TFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAE---I 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N +D   + L         K   SFG ++ +D+++     CS+ +   +  + K + 
Sbjct: 210 CIINSNDKIEKSLIH----SKNKKWISFGTNR-SDYRI-----CSKSNDPILFFKNKKIL 259

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   GYH   N+L++L I   +    + AI  L  F        R++   N+    
Sbjct: 260 NTSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFSNLP---HRFQIIKNEKGVR 316

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLY 399
            I++S + N  S + A++ +           I +L     +G  S+S + ++ + +    
Sbjct: 317 WINDSKSTNVNSTQVALNSIKTTG------TIRLL-----LGGDSKSANFNILKNIFRTL 365

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            I  ++  G   + L     +     Y E +    + I   +  GD V++
Sbjct: 366 KI-KIYCFGRDGIKLSKICEKKS--IYVENLKKAVILISKQVKSGDTVLL 412


>gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
 gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
          Length = 413

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 127/378 (33%), Gaps = 45/378 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D+V     L+I    V++    +++  +   L    T I ITGS GK+TT  + +  L+ 
Sbjct: 50  DLVVVSPGLNIEKLNVNNKSKVISEYELVFNLVKDKTFIGITGSNGKSTTTFLTSQILNK 109

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           I       G+    +G       +  D D+ + E     +  +R           VI  I
Sbjct: 110 IGLKSVACGNIGYPLGYA-----IFDDFDYFVVEFSSFQIDLMR---KGEFLDAGVIINI 161

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL  +   E    +K  + E L+  G   +  D      +      +          
Sbjct: 162 TPDHLDRYKTFENYLKSKVRLSELLKDDGFFVVGKD--ITSYIANYDLCI---------D 210

Query: 253 SKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +   D+ +L+      E  ++ V             +G H   N+   L IV+      +
Sbjct: 211 TDFNDYPKLKGDVLYFENFYINVN--------HFPLVGKHNLVNLSFALEIVNNFY---E 259

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                  +    +G   R            +++S   N  S K A+  L       +G+ 
Sbjct: 260 LKGDVTHLIEDLKGLPHRCEIVREIDGILFVNDSKGTNVDSTKTALKGL-------DGKI 312

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I +LG + + G+ S+  + D+           V   G     + D +     +  ++  +
Sbjct: 313 ILLLGGLDKDGDFSE-LNDDI-----KKKCKAVVCFGRDAKNIYDQIDFEKKILVNKLKE 366

Query: 432 GLFLFIQSSLVDGDVVVV 449
                       GD+V++
Sbjct: 367 AFDTS-TELAKSGDIVLL 383


>gi|261823145|ref|YP_003261251.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
 gi|261607158|gb|ACX89644.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
          Length = 461

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 133/366 (36%), Gaps = 32/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +  TG I    
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIISPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
           +D   + + A       + +      +   ++ +K     + S  +V L  + +  VH  
Sbjct: 222 NDLNLKQVMAMGCWSEQELV-----GEEGVWRAQKVAI--DASQYQVYLNNELVGEVHWK 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R      +    + D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINAR---RRLELRGTEHGVAVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVW 405
             +P ++ A +S L      G  R +AVL    E    +    +   E+  SL     V+
Sbjct: 331 AHHPTAILATLSALRS-KVGGTARILAVL----EPRSNTMKLGMCKNELAPSLARADEVF 385

Query: 406 LSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN  GF  +
Sbjct: 386 LFQPTHIPWQVVEVAEACIQ--PAHWSADIDTLVENIVKTAQPGDHILVM-SNG-GFSDI 441

Query: 461 INLLLE 466
            N LL+
Sbjct: 442 HNKLLD 447


>gi|300774251|ref|ZP_07084118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758930|gb|EFK55759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 457

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 106/350 (30%), Gaps = 36/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +  ITGS GK+TT  +    L          G+      + +         D  + 
Sbjct: 111 TNARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGNIGRSFALQV----AQEKFDVYVL 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224
           E+    L ++    +  R  +AVI  I P HL  +   +E    +K  +           
Sbjct: 167 EISSFMLDDM----YQFRADVAVILNITPDHLDRYDHKMENYVDSKFRMIRNQTANDYFI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280
              DD        + H        +  +  N    L +         +     +  +  S
Sbjct: 223 YCLDDEETVKGLERHHTEAAIWPMTQEQVINPGAYLDQEKNIIINTPKGEQFIMNTEDLS 282

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++      G H   N +    +  +      +  +++S +        R       G   
Sbjct: 283 LQ------GKHNVYNNMAAGLVAKVQELRNRSMQESMSSYVNIP---HRLEHVACIGGVN 333

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S+  A+   S        + + ++G + +  +       ++   L    
Sbjct: 334 YINDSKATNVNSVWYALESFS-------PQIVLIMGGVDKGNDY------EMLRDLVRSK 380

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  +   G     + ++      V   S +M             GD V++
Sbjct: 381 VRAIICIGKDNTRIHESFEEDTDVIVNSSSMKDAVEIASHIAQKGDTVLL 430


>gi|237746936|ref|ZP_04577416.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378287|gb|EEO28378.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 464

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 143/382 (37%), Gaps = 39/382 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
              ++A+ G+ GKTTT  ML   L     +    IG    + G+   L R   D  F + 
Sbjct: 102 DKWVLAVAGTHGKTTTTSMLAWILEDAGYSPGFLIGGVPLNFGISARL-RGNADSSFFVI 160

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  A++  +   H   FS I  I +    +   +   G +
Sbjct: 161 EADEYDTAFFDKRSKFVHYRPKTAILNNLEFDHADIFSDISAIETQFHHLVRTIAGNGRL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+  + +  +      +    FG S N  + L +        +++   QG    V
Sbjct: 221 IVNVRDTALKRVIDRGCWSEKE---WFGGSGNNGWTLAEAGDDGFVVFLDGVAQG---TV 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +    + AI +LS F   +   +R  C       ++ D
Sbjct: 275 KWELTGEHNRLNALAAIAAARHVGVVPEQAIASLSRFKNVK---RRMECLGEVRGISVYD 331

Query: 344 ESYNANPASMKAAISVLSQ-ISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSL 398
           + +  +P ++ A I+ L + I      R +AVL      M  +G + Q     LAE    
Sbjct: 332 D-FAHHPTAIAATIAGLRRKIGARNHTRILAVLEPRSNTMK-LGTMKQKLPHSLAE---- 385

Query: 399 YNISHVWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                V+  G H         L++AL P        E +D L   I SS   GD ++V  
Sbjct: 386 --ADLVFGYGAHSGKNALGWDLQEALGPLGEKARAFEDIDSLVTEIVSSARAGDHILVM- 442

Query: 452 SNSCGFY----RLINLLLEEFP 469
           SN  GF     ++++ L  + P
Sbjct: 443 SNG-GFGGIHQKILDRLAGKQP 463


>gi|87303830|ref|ZP_01086543.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87281659|gb|EAQ73653.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 401

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 140/408 (34%), Gaps = 54/408 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +  +  + ++   D+L AL               IA+ GS GKTTT  ++
Sbjct: 16  AIPDTNPELQNARAHQLAIWHRSDLLAALIDQQA---------SIAVAGSHGKTTTSTLI 66

Query: 127 TIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T  L    +   A IG     +G      +        + E   S    ++F      P 
Sbjct: 67  TTLLIEAGEDPTAVIGGVVPCLGSNGHSGQG----RLLVAEADESDGSLVKF-----SPS 117

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +   H  ++ G++++ S       G E+   +  NYDD   +     +      
Sbjct: 118 LGVITNLELDHTDHYKGLDDLISTLQRFGRGCER---LIANYDDPILQEHFEPTAW---- 170

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +S+N  F     +   ++        G ++ +      G H   N    L    
Sbjct: 171 --WSNQQSENIAFAALPLQLDGDRCTARFYENGSAVGDFTLPMAGLHNLSNATAALAACR 228

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +  +K L+        G+R+          ++D+ Y  +P+ ++A +++   + 
Sbjct: 229 MEGVPFEALVKGLAQLQAP---GRRFDLRGTWEGRHIVDD-YAHHPSEVRATLTMAQLMV 284

Query: 365 -------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSG 408
                  P    R +AV          +Q F    AE L          +Y      + G
Sbjct: 285 SSGRSPLPSSPQRLVAVF--QPHRFSRTQQFFEAFAEALQNCDALLLAPVYAAGEQTIPG 342

Query: 409 FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
               AL     +L   + +  ++ +D L   ++      D+V+   + 
Sbjct: 343 VCSNALAQRIRSLRPDLEIAVADDLDQLTDLVKQRSRPDDLVLAMGAG 390


>gi|329297059|ref|ZP_08254395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plautia stali symbiont]
          Length = 451

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 138/408 (33%), Gaps = 30/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      +         +   +     ++A+ G+ GKTTT  M   
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNTPYLSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMAAR 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E            +  V   P 
Sbjct: 124 ILEACGLEPGFIIGGLPGNFDVSAKLGKSP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I L   D   + + A        
Sbjct: 180 TLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILLPEHDHNIKQVMAMG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
             +S  +S   + + +  K   + S  E  L G+ + EV    +G H   N LM +    
Sbjct: 234 -CWSEQESVGDNGRWQANKLVPDASRWEAWLDGEKVAEVNWALVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A +AL+ F      G+R      +     + + +  +P ++ A ++ L    
Sbjct: 293 HVGVKPCDAGEALNSF----INGRRRLELRGEVNAIKVYDDFAHHPTAILATLAALRS-K 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFH--VLALKDALPRS 421
             G  R +AVL    E    +    +  +E+         V+L   H     + D     
Sbjct: 348 VGGTARILAVL----EPRSNTMKMGVSKSELAPSLGRADEVFLFQPHHIPWQVADVAEAC 403

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           I   H+S  +D L   +  +   GD ++V  SN  GF  +   LLE  
Sbjct: 404 IQPAHWSADIDTLVEMVAKAAQPGDSILVM-SNG-GFGGIHQKLLERL 449


>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           bromii L2-63]
          Length = 463

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 131/381 (34%), Gaps = 58/381 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIA+TGS GKTTT  +++  L +        G+    +   +       D D  + EL 
Sbjct: 117 RIIAVTGSDGKTTTTTIISEFLKAAGFNVHLGGNIGKPLLPEI---ESVNDDDCAVVELS 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P IAV+T +AP HL     ++E   +K  I           LN D
Sbjct: 174 SFQLISMRK-----SPDIAVVTNLAPNHLDIHKDMQEYIDSKKNIILHQNAFSKAVLNLD 228

Query: 229 DS----FFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +     F E ++ +     +K   S G   + D      + + +    +           
Sbjct: 229 NEITNGFSESVRGQLAKFSVKENVSNGAFLDGDTICYNDYGKITRIMNI----------H 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L  +  V  L  D +T       F     R +  R           +
Sbjct: 279 DIKIPGMHNVENYLAAISAVWGL-VDAETMTAVAKTFGGVAHRAEFVREV---DGVKYYN 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S  ++P   + A+  LS        ++I ++      G      +  L  V++   +  
Sbjct: 335 DSIASSPT--RTALGTLS-----LYKQKICIIAG----GYDKHIPYEPLGPVIND-KVKL 382

Query: 404 VWLSGFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSC 455
           + L G     ++ A+  +       I +     M+      +     GD+V +  +S S 
Sbjct: 383 LILLGDTAPKIEKAVKEASNYDADEIEIVNVTNMEEAVAVARERSTKGDIVSLSPASASF 442

Query: 456 GFYR-----------LINLLL 465
           G Y+           ++N L 
Sbjct: 443 GLYKNFEERGNHFKSIVNALK 463


>gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
 gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
          Length = 472

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 114/355 (32%), Gaps = 36/355 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                +   +IA+TGS GK+TT  +L   L  + +     G+    +         PVD 
Sbjct: 113 WDEFDTPPKVIAVTGSNGKSTTVALLHHILEHVGRNSQMAGNIGRGVLDIDP----PVDG 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL        R LT    P +AV T + P HL   +G+    +AK  +F      
Sbjct: 169 GVVVLELSSYQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPD 224

Query: 221 GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +  D+     L  + S   G   +      +        W   + + ++    +G+
Sbjct: 225 -RAVIGIDEDEGLFLAGQMSEGNGDDRVIRVSSGQKLSGSA-GWSVFARKGFLSEYRKGR 282

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +  +    G H  QN          L         A+  +     R +R   A 
Sbjct: 283 QAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMKTYPGLPHRSQRVAQA- 341

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                + +++S   N  S   A+S   +I     G          E     ++      E
Sbjct: 342 --NGVSYVNDSKATNVDSAAKALSAFKKIRWICGG---------LEKEGGLEALKGATGE 390

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           VL  Y I           A + A+  ++      TM        +   +G+ V++
Sbjct: 391 VLKAYVIGR--------EAAQFAMQLNVDAEVCTTMAAAVECAMADAGEGETVLL 437


>gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
 gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
          Length = 458

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNGMENEA----LGDVLKFSL-------VEKVYNGAYLSNNKLTMQGKEVCDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++         E   I + G      +    F     + L+       
Sbjct: 333 SIASSPSRTLAGLNSF-------ERPVILIAGG----YDKKIPF-----KPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  +        I +    +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 506

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 142/430 (33%), Gaps = 59/430 (13%)

Query: 7   FHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             +++       +  VP          +S DSR+      FF  KG  +    ++  A+ 
Sbjct: 21  LKEIITPTD--WVYTVPQEMTDIAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAAAID 76

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +G    +  T    +  +  I V  + + +  + +       + +   I ITG+ GKT+ 
Sbjct: 77  QGIQCYISETPYD-NFATYGIIVTDIRETMAVIAQAF-YGNPQEQLVTIGITGTKGKTSC 134

Query: 123 KEMLTIALSS-IKKTYACIGSYNNHIGVP------------LTLARMPVDV-----DFGI 164
                  L+    +  A   S  N +               L L +M  +         +
Sbjct: 135 AYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEAVANGMTHLV 194

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
            E+        R     +   I     I+P H+        ++    K E+      +  
Sbjct: 195 MEVSSQAYKTKR--VAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIRN---SKQ 249

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQL 276
           + LN     + LL+       +    ++G+S +AD+       L+ +   +    ++V  
Sbjct: 250 MILNRQSDHYHLLRETCEVHQV-PYITYGRS-DADYVVQEGMDLKSFALTAASDVLQV-- 305

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S E     +G    +N    +    +  A  + A     V       G+        
Sbjct: 306 ---SGEYQLGILGSFNHENAAAAILAACLAGASREDA---QKVLPTVIIPGRMIVLEKEN 359

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   ++D  Y  N  S ++   +  Q+ P  +GR + V G     G  +QS   D+   L
Sbjct: 360 GAVMIVD--YAHNYLSFQSLSELARQLRP--DGRLLFVTGS---AGGKAQSRRADMGRAL 412

Query: 397 SLYNISHVWL 406
             Y    V+L
Sbjct: 413 GEY-ADKVYL 421


>gi|69244714|ref|ZP_00602978.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257879366|ref|ZP_05659019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257881768|ref|ZP_05661421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257890192|ref|ZP_05669845.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257893520|ref|ZP_05673173.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|258615774|ref|ZP_05713544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecium DO]
 gi|260558808|ref|ZP_05830997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|293553185|ref|ZP_06673822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|293560474|ref|ZP_06676966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|293568300|ref|ZP_06679624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|294621603|ref|ZP_06700768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|314937871|ref|ZP_07845187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|314941362|ref|ZP_07848255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|314950121|ref|ZP_07853407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
 gi|314951338|ref|ZP_07854392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|314992831|ref|ZP_07858232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|314997991|ref|ZP_07862886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|68196305|gb|EAN10734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257813594|gb|EEV42352.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257817426|gb|EEV44754.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257826552|gb|EEV53178.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257829899|gb|EEV56506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|260075267|gb|EEW63580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|291589012|gb|EFF20836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|291598768|gb|EFF29820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|291602595|gb|EFF32810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|291605622|gb|EFF35064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|313588003|gb|EFR66848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|313592635|gb|EFR71480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|313596555|gb|EFR75400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|313599785|gb|EFR78628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|313642729|gb|EFS07309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|313643562|gb|EFS08142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
          Length = 453

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 35/301 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A+     D  + EL    L  I       RPHIAVIT I  AH+      +E   AK  
Sbjct: 156 VAQEAKSEDKIVMELSSFQLMGITDF----RPHIAVITNIYEAHIDYHGTRKEYVKAKWN 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + + + +   + LN++ S  + L  ++ A     +  F   +     L       + S  
Sbjct: 212 LQKNMTEKDYLILNWNQSELQELAQRTKA----RVLPFSTKE----VLEDGVYADDYS-- 261

Query: 273 EVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  + + +  +      G H  +N L  + +  +     +   + L  FH       R 
Sbjct: 262 -IYYKKEKIMEISELGVPGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVP---HRT 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + K A+S            ++ +L    + G        
Sbjct: 318 QYVGEIQGRKFYNDSKATNILATKMALSGFET-------SKVVLLAGGLDRGNTFDEL-- 368

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
               + SL  I  + + G     L DA  ++    +  +++++        +  DGDVV+
Sbjct: 369 ----IPSLKGIKAMVVFGQTKEKLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVL 424

Query: 449 V 449
           +
Sbjct: 425 L 425


>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS223]
 gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS223]
          Length = 439

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 152/448 (33%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       +F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGAETLATSFPDVKLISGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                +   T  V +   + I V G  +    L    +A R   K  +I ITGS GK+T 
Sbjct: 71  IISPGIATYTPEVRAAVDMGIEVIGDVE----LFAREIADR---KPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++           A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMAREAGIAVAVGGNIGVP-----ALDLLHENADLFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  +A    I+  H+  +S I     AK  ++   +++  +  N DD      +  +   
Sbjct: 175 KCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFNRDDKLTVPPEPMNQN- 230

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  +  AD       +    S   + +           IG H   N+L  + 
Sbjct: 231 ------SFGLAAPEADEWGISDSKIYHGSSEIMPI------TEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V ++  D     K    F    G   R      +   T +++S   N  +  AA+  LS
Sbjct: 279 LVDVVGVDKQIMAKVARSFT---GLSHRCEVVGIKNGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G     G+   +    L   ++L  ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + V   ETM             GD+V++
Sbjct: 385 VRV---ETMAAAVTKAAELATSGDIVLL 409


>gi|16763236|ref|NP_458853.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144715|ref|NP_808057.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213584532|ref|ZP_03366358.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213649722|ref|ZP_03379775.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289829256|ref|ZP_06546868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25293612|pir||AC1056 murein peptide ligase (EC 6.3.2.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505544|emb|CAD06896.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140354|gb|AAO71917.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 457

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 132/399 (33%), Gaps = 39/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDTSEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R IAVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 DACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG 436


>gi|168244085|ref|ZP_02669017.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194445921|ref|YP_002043673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449308|ref|YP_002048459.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194404584|gb|ACF64806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407612|gb|ACF67831.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337012|gb|EDZ23776.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 457

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 35/397 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 EACVQPAHWSGDVDTLADMVVKTAQPGDHILVM-SNG 436


>gi|226329708|ref|ZP_03805226.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
 gi|225202894|gb|EEG85248.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
          Length = 459

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 129/367 (35%), Gaps = 30/367 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWVLEDCGYKPGFLIGGVPGNFQVSAQLGESP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  I      +   +  +G I + 
Sbjct: 161 EYDSAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLAAIQKQFHHLVRIVPGSGKIIMP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D   +    ++  +G  +   F   +  D+Q +K    ++ S   V  +G+ + EV  
Sbjct: 221 DNDMNLK----QTIGMGCWSEQEF-TGETGDWQAKKI--SNDSSHFAVFHKGEQVGEVCW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN LM +     +      A +AL+ F       +R          ++ D+ 
Sbjct: 274 GLSGEHNMQNGLMAIVAAHHVGVLPADACEALNKFINAR---RRLELRGEVNQVSVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R IAVL    E    +    I   ++         V
Sbjct: 330 FAHHPTAILATLEALRS-KVGGTARIIAVL----EPRSNTMKMGISKDDIAPALGRADEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L    ++  L   +         +S  +D L   I      GD +++  SN  GF  + 
Sbjct: 385 FLFQPPNIQWLVSDIAEHCVQPARWSTDLDTLVDMIAKEAQAGDHILIM-SNG-GFGGIH 442

Query: 462 NLLLEEF 468
             LL + 
Sbjct: 443 EKLLAKL 449


>gi|94266852|ref|ZP_01290512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93452482|gb|EAT03081.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 126/442 (28%), Gaps = 81/442 (18%)

Query: 52  DGHD---FILHAVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           DGH    F   AV        V  D+          +P+       G L           
Sbjct: 70  DGHSPELFA--AVDAIVVSPGVPLDIPALKEAARAGVPII------GELALAPAYLH--- 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TG+ GK+T   ++   L +        G+    +         P + D+ + E
Sbjct: 119 -TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGGNLGVPLAQY---LAGPQEADWVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP I V+  I+P HL  +   +  A++K  +F     T    LN
Sbjct: 175 VSSFQLD----TAGAFRPQIGVLLNISPDHLDRYPDYQAYAASKWRLFAHQRATDWAVLN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK------------QCSEQSWMEV 274
             D     L   +  +  +    F      + Q                      + + V
Sbjct: 231 GADPEIARLAVAAPPVARR--LDFNCQPRPEGQATAIDDKITITGGAWSASTPAGARLLV 288

Query: 275 QL----------QGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILT 307
            +           G+ ++      G                     QN    +    +  
Sbjct: 289 NVYSLLKQPVTGPGERLQWSTPAAGADPIPPEVYEPGPELAVEPNLQNAQAAILAARLAG 348

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                 +  L  F        R     +       D+S   N  ++ +A+  L+Q     
Sbjct: 349 CSSSAVVGGLRAFKSLP---HRLALVASIAGVDYYDDSKATNIGAVVSALQGLAQ----- 400

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
               I + G + + G+        L   +    +  V L G     +  AL  S+ +  +
Sbjct: 401 --PVILIAGGLDKGGDY------KLLLPVLKEKVRAVVLIGSARARMDAALEGSVPLTQA 452

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           E +             G+ V++
Sbjct: 453 EDLPAAVAKAAELAAPGEAVLL 474


>gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
 gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
          Length = 390

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 120/378 (31%), Gaps = 53/378 (14%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLT 152
            T+I ITG+ GKTTT  ++   L +  +    IG+    +                +   
Sbjct: 1   MTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAM 60

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           LA M    VD  + E+    L   R      R  +   T ++  HL     + +   AKA
Sbjct: 61  LAAMVERGVDTVVMEVSSHALALGR--VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKA 118

Query: 212 EIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +F  +   +  T  +  DD           A     I      + A ++          
Sbjct: 119 SLFDPDSALRARTAVVCIDD----DAGRAMAARAADAITVSAADRPAHWRATDVAPTDAG 174

Query: 270 --SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              +  +   G    +     G +   N L+ L I+  +    + A+            G
Sbjct: 175 GQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPG---LREIRVPG 231

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +    QGF  L+D  Y   P ++++ ++ L+        RR+AV+      G+    
Sbjct: 232 RLEQIDRGQGFLALVD--YAHKPEALRSVLTTLA-----HPDRRLAVV--FGAGGDRDPG 282

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMD--GLFL 435
               +  + +      V ++  +             L  A          E  D      
Sbjct: 283 KRAPMGRIAAQL-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 341

Query: 436 FIQSSLVDGDVVVV--KS 451
              +    GDVV++  K 
Sbjct: 342 HAVAWARPGDVVLIAGKG 359


>gi|332877758|ref|ZP_08445499.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684338|gb|EGJ57194.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 449

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/380 (13%), Positives = 129/380 (33%), Gaps = 46/380 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  V   +   +  +A+ G+ GKTTT  +L   L       A + ++   I        +
Sbjct: 101 RSEVLGFITQNSFCLAVAGTHGKTTTSSILAHILVESG---ASVSAFLGGIAENFNSNLV 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               ++ + E        +R     + P+IA IT++   HL  +   + +     +    
Sbjct: 158 LHGNEYTVAEADEFDRSFLR-----LSPNIACITSMDADHLDIYGDEQHLIEGFHQFAGK 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +++ G++ +         +  +          +FG   ++D+  +  +        + + 
Sbjct: 213 IKEGGSLIV----RNGLAIAGE----------TFGLEDDSDYSFQHIRIVDGVYHFDFKY 258

Query: 277 QGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G   +       G H   N L  + +        +  +  L+ F   +   +R+   + 
Sbjct: 259 KGGIYKDYTFLKPGRHNLLNALAAVSMAIKAGFAPEALLPHLATFKGVK---RRFSYIIK 315

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
           +     ID+ Y  +P+ + A    +S++ P+     I        +   ++ F  D A+ 
Sbjct: 316 EKNRVFIDD-YAHHPSEINALYQAVSEMYPNTPKTIIF----QPHLFSRTRDFMDDFAKS 370

Query: 395 --------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                   +L +Y    + + G     L   +          +   L   +  ++    +
Sbjct: 371 LSQFDEVILLDIYPARELPIEGITSEVLLSKITTPQKTLV--SKAELIPLL-ETMQPS-L 426

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           ++   +   G    +  + E
Sbjct: 427 LLAVGAGDIGAE--VAHIKE 444


>gi|257454325|ref|ZP_05619588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
 gi|257448228|gb|EEV23208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
          Length = 486

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 108/323 (33%), Gaps = 27/323 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            +    IIAITGS  K+T   ++   + +        G+          L  +   +   
Sbjct: 128 KQRDIPIIAITGSNAKSTVTTLVGEMVKNAGFKVGVGGNLGTP-----ALDLLLEPIQMA 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L   +  T+L    +A +  ++P HL     +     AK  IF+G++    I
Sbjct: 183 VLELSSFQL---QTTTNLAA-KVATVLNMSPDHLDRHGNMLGYHQAKHRIFQGVQS---I 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N +D     L A           SFG +     Q    K    + W+    +    E 
Sbjct: 236 VVNREDLLSRPLVADDM-----PTISFGSNAPDMNQYGLIKDSDGKIWLARGRERLLNEK 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L I  +    +++ +  L  F    G   R             D
Sbjct: 291 DVPIKGEHNLMNALSALAIGELAGLPLESMLTTLKNFV---GLPHRCEFITTTHQLDCFD 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AAI  L ++      +   +LG   +    +     +LA+ L  Y    
Sbjct: 348 DSKGTNIGSTIAAILGLGKVYAPKGKKLAVILGGQGKGQNFA-----ELAKPLMDY-AQV 401

Query: 404 VWLSGFHVLAL-KDALPRSIHVH 425
           V+  G     +  D     +  H
Sbjct: 402 VYFIGEDADKIAADLASAGLDAH 424


>gi|134302121|ref|YP_001122090.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049898|gb|ABO46969.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 940

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGVNTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    G++I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGKKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|56708207|ref|YP_170103.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670678|ref|YP_667235.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931944|ref|YP_001891929.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457311|ref|ZP_03665784.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370694|ref|ZP_04986699.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875020|ref|ZP_05247730.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604699|emb|CAG45763.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321011|emb|CAL09146.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568937|gb|EDN34591.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187712853|gb|ACD31150.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254841019|gb|EET19455.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159425|gb|ADA78816.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 940

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    G++I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGKKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|148265987|ref|YP_001232693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
 gi|189082910|sp|A5G8K2|MURD_GEOUR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146399487|gb|ABQ28120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
          Length = 453

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 143/404 (35%), Gaps = 47/404 (11%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            ++ H F++      A LVVV+  +   I  L   +         ++++ +AAR    A 
Sbjct: 60  RHERHSFLM------ADLVVVSPGVPMDIKPL---LLAKAQRRTVISEIELAARF-LTAP 109

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITG+ GKTTT  +     ++        G+  N +   +T       VD  + EL  
Sbjct: 110 LVAITGTNGKTTTTTLTGEIFAACGFKTFVGGNIGNPLIELVTSGEA---VDRVVVELSS 166

Query: 170 SHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L G I F     RP +AV+  I   HL  ++  +E   AK  IFE         LN D
Sbjct: 167 FQLEGIIDF-----RPQVAVLLNITEDHLDRYATYQEYIDAKLRIFENQTSADYAVLNMD 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVH 285
           D        K  A  + T      ++   ++            +  + +G+         
Sbjct: 222 DPLVAAYAGKMKARVVPTSQRQELAQGIFYR---------NGSIVYRWEGREELFATASF 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N++  L    ++  D   A+ AL  F    G   R             ++S
Sbjct: 273 RLKGVHNIDNIMAALASTLLMGCDAGQALAALEAF---AGLPHRMEFVREVNGVAWYEDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S+  ++                + G   + GE +      LA ++    + H+ 
Sbjct: 330 KGTNVGSVVKSLESFDSG-------ITLIAGGKDKGGEYTP-----LAGLVKER-VGHLI 376

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     + +AL      H ++T++            G VV+ 
Sbjct: 377 LIGEAKERMCNALGSLTDTHLADTLEDAVALAHRLTSPGGVVLF 420


>gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 447

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 114/349 (32%), Gaps = 35/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A II ITGS GKTT   M+   L +   + +  G+        +            + 
Sbjct: 100 TGANIIGITGSNGKTTVTNMVYHILKNAGLSVSMAGNVGFSFAEQV----ARQSFHNYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  +       RPHIA++T+I P HL       +E   AK +I +   K   + 
Sbjct: 156 ELSSFQLDGVEDF----RPHIAILTSITPDHLDRYHDNFQEYIQAKFKITKNQTKDDFLI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIY---SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            N DD        K+        +   +     +A  +  K       +   + +   S+
Sbjct: 212 YNKDDKVIVNWLEKNTVKAQLIPFTNTTIMTDLSAFIENNKINIKLNHNLFTMSVNDLSV 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +      G H  +N +       +L     T  +++  F   E    R            
Sbjct: 272 K------GDHNTRNAMAASTAARLLKIRKQTIRESMESFQGVE---HRLEQLGKINKVAF 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +   A+  ++  +    G            G    + + DL  +++   +
Sbjct: 323 INDSKATNINATFYALDSMTAPTVWIVG------------GVDKGNVYEDLLPLVNE-KV 369

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     + ++    +  +  S  M            D D V++
Sbjct: 370 KAIVCLGIDNQKIYNSFSNCVDTIIESSNMTDAVAKAYGLTEDNDAVLL 418


>gi|302339378|ref|YP_003804584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636563|gb|ADK81990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 459

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 136/414 (32%), Gaps = 39/414 (9%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDV--------LGALNKLAV---AARLRSKAT 109
           ++K A   V        +   S     V +         L A  ++          +   
Sbjct: 52  IRKLASFPVRFVLGRHEMSDFSKADIVVKNPAVPASSPYLKAAARVESDISIFLRHNNRP 111

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IIA+TGS GK+T    +  A+          G+        +   R        I EL  
Sbjct: 112 IIAVTGSKGKSTVVSAMFHAIQLRYPEARLGGNITVSPLTFIDECRAESAAPV-ILELSS 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L ++R    L++P +++IT I   H +++  +E   + K  I+    K     +N DD
Sbjct: 171 WQLADLRG-KRLLKPAVSLITNIMHDHQNSYDSMEAYVADKKIIYADQTKEAYTVINGDD 229

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGI 288
            +     +++ A  I     F + + +   +  W       W  +   + + +       
Sbjct: 230 PWSAEFASETPAKSIP----FFRDEGSARGISAWLAEDGSGWYRDASGEEEILPAHIAIC 285

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    ++ +         + L+ F    G   R      +      ++S + 
Sbjct: 286 GEHNRLNLLSAALVLKLFGTAGSDVKQRLADF---RGIPHRLELLTEKRQVRWYNDSAST 342

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +   A+   S          I + G   +  + S        E  +      + L G
Sbjct: 343 IPEATAVAVKSFSA-------PLILITGGTDKNIDFSP------LESYAAVPKKMILLEG 389

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLVDGDVVVVK-SSNSCGFY 458
                + D L  S ++ +S     L   +Q        GD+V+    + S G +
Sbjct: 390 SASDKMADIL-ESRNLPFSGPFASLKEAVQCAEKEASPGDIVLFSPGATSFGMF 442


>gi|228992648|ref|ZP_04152574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
 gi|228766980|gb|EEM15617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
          Length = 450

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 130/352 (36%), Gaps = 39/352 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  + ITGS GKTTT  +    L   +K     G+      V   + +   + +
Sbjct: 106 AYRISEAPFVGITGSNGKTTTTTLTFEMLKEGQKHPVIAGNIGT---VACEVVQAAKENE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +  
Sbjct: 163 VVVTELSSFQLMGVETF----QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD   +++   +++ G K ++S  K       +       + +   +  +G+ +
Sbjct: 219 YSVINADD--VDVMALSANSKGQKVLFSTTK------VIEDGACIKDGA---LYFKGEKI 267

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  + I  +L  + +  I  L  F   + R +      N+ F+
Sbjct: 268 VEVQDIVLPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNRKFY 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+S  +Q         + +L    + G                 
Sbjct: 328 ---NDSKATNMLATEKALSAFTQ--------PVILLAGGLDRGNEFDDLIPYF------E 370

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  +   G     L  A  ++    +   + ++       S   DGDV+++
Sbjct: 371 HVKAILTYGQTAPKLVRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|90580226|ref|ZP_01236033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
 gi|90438528|gb|EAS63712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
          Length = 446

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 123/347 (35%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++AITGS GK+T   ++              G+          L  +       
Sbjct: 104 REVDKPVVAITGSNGKSTVTSLVGEMAKEAGINVGVGGNIGF-----AALDMLAQQHSLY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    AV   ++  H+  +  G+ + + AK  IF+  +    
Sbjct: 159 VLELSSFQL----ETTTSLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDHAK---L 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD       A         + SFG     D+        + + W+ V  +     
Sbjct: 212 AVFNRDD------LATKPTQFSGAMTSFGFDDQ-DY---GIVLVNGKEWLAVNGEAVMAV 261

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +        D A +A        G   R + A+N+     +
Sbjct: 262 ADIALVGRHNVANCLAALALADAAGIPRDAACRA---MQRYTGLAHRCQLAVNRHGVRWV 318

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N AS  AA++ L       EG+   ++G     G+   +   +L  VL+  N+ 
Sbjct: 319 NDSKATNLASTLAALNGLQ-----LEGKLHLLMG-----GDSKGAEFSELKPVLADLNV- 367

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G       D +  +I V   ETM    + I  ++  GD+V++
Sbjct: 368 QLYSFGRDRHLFNDVVDNAISV---ETMSDAMVCISRTVQSGDMVLL 411


>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
 gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
          Length = 438

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+        L+L + P      
Sbjct: 101 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---ALSLLQSPA--QLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A +  ++  H+  +  G+++  +AK  ++E  +    
Sbjct: 156 VLELSSFQL----ETTYSLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYENAQ---I 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    ++            SFG     DF    +    +Q  + ++++G+ + 
Sbjct: 209 CIVNADDALTMPVRG-----ADTRCVSFGV----DFG--DYHLNKQQGSIWLRVKGEKVL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +         +L+      G   R++         
Sbjct: 258 NTAEMKMVGQHNYTNALAALALADAVGLP---RASSLAALTHFNGLAHRFQLVHEHQGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    ++G   +  + +      L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----QVQGTLWLLMGGDGKSADFTP-----LIPWLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G    AL  AL   I V  +ETM      I   +  GD+V++
Sbjct: 365 V-RLYCFGRDGDALA-ALRPDIAVR-TETMRQAMEQIAPQVNAGDMVLL 410


>gi|251797876|ref|YP_003012607.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
 gi|247545502|gb|ACT02521.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
          Length = 473

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 122/358 (34%), Gaps = 39/358 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A II ITGS GKTTT   +   L          G+    I +    A    D ++ + EL
Sbjct: 112 APIIGITGSNGKTTTTTWIGKLLGEAGLNPIVAGNIG--IPLCEAAAEATKD-NWIVAEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T   RP IA++  IA  HL    G+E+  ++KA++F          LN+
Sbjct: 169 SSFQLKG----TSSFRPRIALLLNIAETHLDYHGGMEDYVASKAKLFANQTADDVAVLNW 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVH 285
           DD+    +  +  A  +         +    +    + K   ++  +  + +  + + + 
Sbjct: 225 DDATCRAIADQLAAKLLPFSLYVRLDQGICIEPPFERGKDSDKEHMIVWRKEDGTEQAIL 284

Query: 286 H-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N L  +          +  + AL  F   E    R   A       
Sbjct: 285 PVSALGLPGRHNAGNALAAIAACLAAGVAPEAMLPALQGFRGVE---HRLEYAGEFNGVN 341

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   NP +   ++  L           I + G     G    S +++L  V     
Sbjct: 342 YYNDSKATNPMATTMSVGSLGA-------PIILIAG-----GLDRGSDYMELLPVFRDR- 388

Query: 401 ISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLV-------DGDVVVV 449
           +  +   G     L     L    +V   E  +     ++ ++         GD+V++
Sbjct: 389 LKGLVTLGQTREKLGKVAELAGLTNVRLVEPEEDAESTLRRAVREAAGLAEPGDIVLL 446


>gi|291619056|ref|YP_003521798.1| Mpl [Pantoea ananatis LMG 20103]
 gi|291154086|gb|ADD78670.1| Mpl [Pantoea ananatis LMG 20103]
 gi|327395390|dbj|BAK12812.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase Mpl [Pantoea ananatis AJ13355]
          Length = 455

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 139/410 (33%), Gaps = 34/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M   
Sbjct: 68  LVIIGNAMTRGNPCVEAVLERNIPYLSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMAAW 127

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L + P    F + E            +  V   P 
Sbjct: 128 ILEACGLEPGFIIGGVPGNFDVSAKLGKSP----FFVIEADEYDCAFFDKRSKFVHYCPR 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   +   G I L   D   + + A       +
Sbjct: 184 TLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILLPEHDHNLKQVMAMGCWSEQE 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +          +Q +  K   + S  EV L G+ + EV    +G H   N LM +    
Sbjct: 244 HV-----GDGGHWQAK--KLTPDASRWEVLLAGEKVGEVNWGLVGEHNMHNGLMAIAAAR 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + A +AL  F       +R           + D+ +  +P ++ A +S L    
Sbjct: 297 HVGVKPEDASQALDSFINAR---RRLELRGEVNGIKIYDD-FAHHPTAILATLSALRS-K 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGF-----HVLALKDAL 418
             G  R +AVL    E    +    ++  E+  SL     V+L         V  + +A 
Sbjct: 352 VGGTARILAVL----EPRSNTMKMGVNKNELAPSLARADEVFLFQPSHIPWQVADVAEAC 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    H S  +D L   I  +   GD ++V  SN  GF  +   LL+  
Sbjct: 408 MQ--PAHCSADIDTLVETIAKTAQPGDSILVM-SNG-GFGGIHQKLLDRL 453


>gi|317129299|ref|YP_004095581.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474247|gb|ADU30850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 451

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 113/344 (32%), Gaps = 34/344 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A II ITGS GKTTT   +   L   +K     G+      V   +A+   + +  + EL
Sbjct: 112 ADIIGITGSNGKTTTTTYIYEMLKGSEKDPLLAGNIGE---VACEVAQKATEKNVLVTEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  I       +P I+++  +  AH+     ++    AK  IF+       I  N 
Sbjct: 169 SSFQLMGIDEF----KPKISLLLNLVEAHIDYHGTMDAYVHAKGNIFKNQTSNDYIIYNA 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L      LG  T+  F           K   C E  ++ V  +          
Sbjct: 225 DDKKVSKLVE----LGQATLIPFSTKGE-----MKHGACIENGYLTVFGKRLLPVEEMSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L       +  A  +   + L  F        R +        T  + S  
Sbjct: 276 PGEHNVANGLAAAAAAHLAGASEEKIRQVLKSFSGVA---HRLQYVDKINGRTFYNNSKA 332

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +   A+    Q         + + G +    +   SF  DL        +  V   
Sbjct: 333 TNVPATITALKAFEQ-------PIVLIAGGL----DRGLSF-DDLIPYFKK-KVKCVVSY 379

Query: 408 GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     L +   ++    VH  +T++        +  +GD++++
Sbjct: 380 GETAQKLVETAKKANIELVHCEKTLENAVKKAYVNSEEGDIILL 423


>gi|332976801|gb|EGK13630.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Psychrobacter
           sp. 1501(2011)]
          Length = 522

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 139/397 (35%), Gaps = 47/397 (11%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A+       +    A I+AITGS  K+T   ++         +    G+        L  
Sbjct: 147 AIVSDIQLFKDACTAPIVAITGSNAKSTVTTLVGQMAKDAGISVGVGGNIGVPALSLLDD 206

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            ++  ++   + EL    L  +  L       +A +  ++P HL     +     AK  I
Sbjct: 207 EQLGDNMTLAVLELSSFQLETVTNLGA----KVATVLNMSPDHLDRHGDMLGYHQAKHRI 262

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F+G +    + +N DD+    L A +         S G S   D          + S   
Sbjct: 263 FQGAQS---VVVNRDDALSRPLIADNTPR-----ISIG-SNAPDLGEYGIITEGDGSLYL 313

Query: 274 VQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +  Q           G H   N L  L +  +    +++ ++         G   R + 
Sbjct: 314 AKGTQKLLAADQLKVKGKHNLVNALAALALGELAGIPLESMLQT---LQDFSGLPHRCQF 370

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFH 389
             N       ++S   N  S +AAI  L  +   + HG+ + + +LG   +         
Sbjct: 371 VDNVAGIDYFNDSKGTNVGSTQAAILGLGSVYSSNSHGKTKLMLILGGQGKGQNFG---- 426

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVD- 443
            +L  +++ Y +S V L G     + + L ++     + +++ +T+D      QS L   
Sbjct: 427 -ELVPLVNKY-VSQVLLIGEDAKLISEHLQQANLSDEVDMYHYQTLDQAMDKAQSLLGSS 484

Query: 444 ----GDVVV--VKSS---------NSCGFYRLINLLL 465
               G V++    +S             F +L++ L 
Sbjct: 485 LSQVGAVLLSPACASLDQYSSYNERGEHFCQLVDALK 521


>gi|288817395|ref|YP_003431742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786794|dbj|BAI68541.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751002|gb|ADO44485.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 422

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 123/359 (34%), Gaps = 40/359 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  + ++ +A R   K  ++AITG+ GK+T   M  + L          G+         
Sbjct: 69  LEVIGEMELAYRF-FKGRVVAITGTDGKSTVTRMTYLILREHFGNVLEGGNTGT--AFSE 125

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            + R P      + E+       ++      RP        A  HL     +E+   +K 
Sbjct: 126 IVLRDPFS--LAVLEVSSFQGKTLKTF----RPCCGAFLNFARDHLDWHISLEDYLHSKY 179

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IF+  ++   + L      +   +   +       Y F  SK+A   LR+ +       
Sbjct: 180 NIFKHQQEEDFVVL------YSRQEEVVNTPTRAKKYFFS-SKDAHGFLREGRAYFMGEE 232

Query: 272 -MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             EV              G+H  +N L +  I  ++    +T  K L  F    G   R 
Sbjct: 233 LFEVS--------KLKIYGHHNYRNALASAMIAKLMGVPSETIRKVLYEFS---GLPFRL 281

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     + ++S      ++++A+  +       +   I + G   + G+  +S + 
Sbjct: 282 ELLGEWEGVKVFNDSKATTVNALESALKSM------PDKSVILIAGGRDKGGDF-ESLYD 334

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + + + L       L G     +  A   +  +   E+++      ++    GD+++ 
Sbjct: 335 LILQKVRLA-----LLIGEAKDKIFQAWRGATILEKVESLEEALKVAKAYSQRGDIILF 388


>gi|302876578|ref|YP_003845211.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307687253|ref|ZP_07629699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302579435|gb|ADL53447.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 458

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 129/356 (36%), Gaps = 57/356 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I AITGS GKTTT  ++   L +        G+    +   +   +   + D  + E
Sbjct: 116 PGKIFAITGSDGKTTTTTLVYEILKTEGYNTWVGGNIGTPLFTKIEEIK---NTDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I+     +   ++ +T ++P HL     + E   AK  IF+   +   + LN
Sbjct: 173 LSSFQLMTIQ-----LPIEVSAVTNLSPNHLDMHKSMNEYIEAKENIFKFQRENDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSM-- 281
            ++     +K K+++     I  F              +  + ++    ++ L+ K +  
Sbjct: 228 IENDITYNMKDKANS----RINFFSSK----------TEVPQGAYFKENKLYLRDKEVCK 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G H  +N+L    + +   A +++  K  + F   + R +  R          
Sbjct: 274 KEELVLMGMHNVENLLTAFLVTNE-DASIESMKKVATTFSGVQHRSEFIREI---DGVKY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
            ++S   +P    A++          + + I + G            HI   E L+    
Sbjct: 330 YNDSIATSPTRAVASLKAF-------DRKVILIAGGY--------DKHIPF-EYLAEEGH 373

Query: 401 --ISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVV 447
             I  + L G     +KD   + I        ++  +T++      +    +GD+V
Sbjct: 374 EKIKKLILLGVTKEKIKDVFDKVIKEKTLDLPIYIVQTLEEAAYKAKEIAEEGDIV 429


>gi|77361421|ref|YP_340996.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122063255|sp|Q3IG02|MURD_PSEHT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76876332|emb|CAI87554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 446

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 119/343 (34%), Gaps = 35/343 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +    L +     A  G+    +   L       DVD  + E
Sbjct: 110 TKPVVAVTGSNGKSTVVTLAQQVLLAAGYKAALGGNIGTAVLDLLQSDLSNNDVDVYVLE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++P  A +  ++  HL  ++  +    +K  I+        +  N
Sbjct: 170 LSSFQLD----TTTSLQPISATVLNVSEDHLDRYASYQAYIDSKLSIYNN---AALVITN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD         +     K+  SFG ++  D+ L +++Q   Q++     +         
Sbjct: 223 ADDE--------ATHSKAKSQLSFGANQG-DYSLGEYQQ---QTYFMQANKAFLPVTSLA 270

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + ++S           A S F    G   R +    +      ++S 
Sbjct: 271 VVGKHNYLNALAVMALLSPFNISKAQYSTAFSQF---NGLAHRCQFVAERAGVKYFNDSK 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AAI  L+        + I + G     G+   +    L   L   ++  +  
Sbjct: 328 ATNVGATIAAIDSLAT----NGQQLIVIAG-----GDAKGADLNALTPYLQQ-HVKALIC 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G      KD +  +   H +  M       +     G++V++
Sbjct: 378 FGKDA---KDLMALTNKSHLTNNMSEAVTLAKQLSEPGNIVLL 417


>gi|317049721|ref|YP_004117369.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
 gi|316951338|gb|ADU70813.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
          Length = 451

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 126/369 (34%), Gaps = 34/369 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M    L +        IG    +  V   L + P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMAAWILEACGLEPGFIIGGVPGNFDVSAKLGKSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  I      +   +   G I L 
Sbjct: 161 EYDSAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLIRIVPGQGKILLP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
             D   + + A       +T+       N  +Q +  K   + S  E  L G K  EV  
Sbjct: 221 EHDHNLKQVMAMGCWSEQETV-----GDNGHWQAK--KLTPDASRWEAWLDGAKVAEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +    + A  AL  F       +R           + D+ 
Sbjct: 274 GLVGEHNMHNGLMAMAAARHVGVKPEDAGDALGRFINAR---RRLELRGEVNAIKVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A ++ L      G  R +AVL    E    +    +   ++         V
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVL----EPRSNTMKMGVSKNDLAPSLGRADEV 384

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L   H     V  + DA  +    H+S  +D L   +      GD ++V  SN  GF  
Sbjct: 385 FLFQPHHIPWQVSDVADACIQ--PAHWSADIDTLVEMVAKVAQPGDNILVM-SNG-GFGG 440

Query: 460 LINLLLEEF 468
           +   LLE  
Sbjct: 441 IHQKLLERL 449


>gi|330813730|ref|YP_004357969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486825|gb|AEA81230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 155

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 1/153 (0%)

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++   K    F    GRG +    +      +IDESYNANP SMK AI   S  + H + 
Sbjct: 1   MEKIKKRAIFFLLPSGRGNKIIKIIKGKKVHIIDESYNANPISMKNAIENFSLFNSHKK- 59

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           ++IA++GDM E+G+ S+ +H+++A++L+   I  ++L G  V+ + + L ++     S+ 
Sbjct: 60  KKIAIIGDMLELGQKSKFYHLEVAKILNKAEIDEIYLVGKEVVHIYNQLKKTKTCFISKD 119

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +            +  + ++K SN  G  +L+N
Sbjct: 120 IVHFKSLFLKIANEKSIFLIKGSNGIGLNKLVN 152


>gi|168821169|ref|ZP_02833169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342272|gb|EDZ29036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088843|emb|CBY98601.1| putative ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 459

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 35/397 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGLGRIIWPENDINLKQTMALGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             G  R IAVL      M  MG         L           V+L    H+      + 
Sbjct: 348 VGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVAEVA 400

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 401 EACVQPAHWSGDVDTLAEMVVKTAQPGDHILVM-SNG 436


>gi|148242946|ref|YP_001228103.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RCC307]
 gi|147851256|emb|CAK28750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RCC307]
          Length = 458

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 113/345 (32%), Gaps = 33/345 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++ VA +  +    I ITG+ GKTT   ++   L          G+             
Sbjct: 99  GEVEVAWQAMAGIPWIGITGTNGKTTVTSLVAHLLQQGGLDAPACGNIGASAAELALACL 158

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                +  + EL    +         V+P I V TT+ P HL     +E   S KA +  
Sbjct: 159 EGEKPERVVVELSSYQI----EAAPSVQPSIGVWTTLTPDHLDRHGTLERYRSIKAGL-- 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L+++G  FLN DD     L A + A   + ++  G+ K+  F           S  ++ 
Sbjct: 213 -LQQSGRQFLNADD---RDLFAHA-AEWPQALWVSGRDKD-QFSA-AITPHLWVSGGQLC 265

Query: 276 LQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            Q   +         G H  QN+ +   +                 F     R +R R  
Sbjct: 266 NQTGPLFPCAALAMPGAHNRQNLALATAVALECGLSPAQIEAGCRSFPGVPHRLERIR-- 323

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDL 392
                 T  ++S   N  +   A+  L         R + VL G   + GE        L
Sbjct: 324 -ELSGITYFNDSKATNYDASLVALQSLE--------RPLVVLAGGRAKRGEPGAWLEA-L 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
            +  +      V L G      ++ L  + +    E  + L   +
Sbjct: 374 GQKAAA-----VVLFGEAQSTFRELLGSAGYPGVIEQQEHLDQAL 413


>gi|295098380|emb|CBK87470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 445

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 143/420 (34%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIVGNAMTRGNPCVEAVLERNIPYMSGPQWLHDFVLRDRWVVAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    D  F + E            +  V   P  
Sbjct: 112 ILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I L  +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPENDINLKQTMAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLNADASEWEVLLDGEKVGEVKWGLVGEHNMHNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVLPADAANALGSFINAR---RRLELRGEAHGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R +AVL      M  MG         L           V+L       + V  + D
Sbjct: 337 GGTARILAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVAD 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A +
Sbjct: 390 ACIQ--PAHWSADVDVLADMVVKAAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAAAAE 445


>gi|227550457|ref|ZP_03980506.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257897140|ref|ZP_05676793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|293377364|ref|ZP_06623568.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
 gi|227180358|gb|EEI61330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257833705|gb|EEV60126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|292644056|gb|EFF62162.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
          Length = 453

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 109/320 (34%), Gaps = 38/320 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K      G+          +A+     D  + EL    L  I        PHIAVIT I 
Sbjct: 140 KGVARLAGNIGYPASG---VAQEAKPEDKIVMELSSFQLMGITDF----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AH+      +E   AK  + + +     + LN++ S  + L  ++ A     +  F   
Sbjct: 193 EAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQSELQELAQRTKA----RVLPFSTK 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVD 311
           +     L       + +   +  + + +  +      G H  +N L  + +  +     +
Sbjct: 249 E----VLEDGVYADDHA---IYYKKEKIMEISELGVPGTHNVENALAAITVAKLYGVSNE 301

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L +FH       R +           ++S   N  + K A+S            +
Sbjct: 302 AIRQTLHLFHGVP---HRTQYVGEIQGRKFYNDSKATNILATKMALSGFETA-------K 351

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSET 429
           + +L    + G            V SL  I  + + G     L DA  ++    +  +++
Sbjct: 352 VVLLAGGLDRGNTFDEL------VPSLKGIKAMIVFGQTKEKLIDAGKKAGIETIVTADS 405

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           ++        +  DGDV+++
Sbjct: 406 VEQAVPLALENSTDGDVILL 425


>gi|294674970|ref|YP_003575586.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
 gi|294473470|gb|ADE82859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
          Length = 443

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 113/351 (32%), Gaps = 31/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + + +I ITGS GKTTT  ++              G+  N + + +         
Sbjct: 95  FAGRYTDSKMICITGSNGKTTTTSLIYHIFKEAGYDAGLAGNIGNSLALQV----AEDPH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           ++ I EL    L  +    +  R  IA++  I P HL  ++  ++    AK  I +    
Sbjct: 151 EYYIIELSSFQLDNM----YDFRADIAILLNITPDHLDRYNFEMQNYVDAKMRIIQNQTD 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K     I+  +S  K K     + + K   E+          
Sbjct: 207 KDAFIYWADDPIIKRELEKYDIHSIQYPFSELKEKGVIGYIEEGKYKIEKPE-----PFN 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L       I     +   K+LS F   E    R          
Sbjct: 262 MEQESLSLTGKHNIYNSLAAGIAADIAGIKKEEIRKSLSDFPGVE---HRLEKVCTVRGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  +   A+  +         + I ++G     G+   + +  +  ++   
Sbjct: 319 QYINDSKATNVDACWYALEAMKT-------KVILIIG-----GKDKGNDYEPIKPLVKEK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L G     L D      I V  + +M             G+ V++
Sbjct: 367 CSGIVYL-GADNQKLHDNFDNLGIPVRDTHSMKECMEACYEMAKPGETVLL 416


>gi|170761088|ref|YP_001788857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226711901|sp|B1KTB9|MURD_CLOBM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169408077|gb|ACA56488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 458

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 120/353 (33%), Gaps = 51/353 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L          G+    +     +  M  D    + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLF--ANIEEMKEDH-MVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P I++IT ++P HL      EE   AK  IF+       + LN
Sbjct: 173 LSSFQLMTMD-----VSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSDNLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD     ++ ++    +  +  F         + K    +  S  ++ +QGK +     
Sbjct: 228 KDDDLTNGMENEA----LGDVLKFSL-------VEKVYNGACLSNNKLTIQGKEICDSKD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+L    +V+     +D+     + F   E R +  R           ++
Sbjct: 277 IKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRCEFIREV---NEVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P+   A ++   +         I + G      +    F     E L+       
Sbjct: 333 SIASSPSRTLAGLNSFEK-------PVILIAGG----YDKKIPF-----EPLAEGGYDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVV 447
             + L G     +K A  + I     E       +M+       +    GD++
Sbjct: 377 KILILMGDTKNKIKSAFEKVISHKKCEMEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
 gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
          Length = 509

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 124/373 (33%), Gaps = 55/373 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
            +  ++AITG+ GKTT   M    + +   T    G+ +      L+ A    D+ +  +
Sbjct: 128 YQPKVLAITGTNGKTTVTAMTRQLVQASGHTAKVAGNISPAALTALSDALAADDLPEVWV 187

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +R L+    P  AV+  +   HL     ++  A+AKA +   L  +    
Sbjct: 188 LELSSFQLESVRTLS----PDAAVVLNVTQDHLDWHGSMQAYAAAKARL---LGMSRVAI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRK-----WKQCSEQSWMEV-- 274
           +N DD     +     AL ++   SFG+       D  L +     W   +E +  ++  
Sbjct: 241 VNRDDPLVMAMADDVKALAVR---SFGRDMPVYEGDLGLERSNDMLWLAAAEANDFDLPA 297

Query: 275 -------------QLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                        + +G+   ++        G H A N L  LG+   L       + A 
Sbjct: 298 APARRKKAAVAPQRPEGRPARLIPADALRVRGQHNALNALAALGLARSLGLGWAAMLHA- 356

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                  G   R            I++S   N  +  AA+              + + G 
Sbjct: 357 --LRDYAGEAHRTEFVRAVAGVDFINDSKGTNVGATVAALD-------GMGAPVVLIAGG 407

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLF 436
           + +  + S              +   V L G     +  AL    + V ++  +      
Sbjct: 408 LAKGQDFSP------LAAAVRAHARAVVLIGQDAGLIGQALAETGVPVEHAVDLGQAVAR 461

Query: 437 IQSSLVDGDVVVV 449
                  GD V++
Sbjct: 462 SIELAQPGDTVLL 474


>gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 431

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 129/413 (31%), Gaps = 87/413 (21%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +   AV +GA  ++   +     G   I                          +I IT
Sbjct: 34  KYKEDAVSRGAHSIISPDECWKVFGLDRI-------------------------RVIGIT 68

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLAR-------------MP 157
           G+ GKTTT   +   L  +    A  G+     N+      TL               + 
Sbjct: 69  GTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTPTVLNTYRHMAQAIA 128

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ + E+  SH  E   +  +    + ++T I   HL     IEE    K   F+  
Sbjct: 129 SGCEYFVMEVS-SHAIEQERIAGIT-FALKILTNITQDHLDYHESIEEYTRIKNLFFQDE 186

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K     +N D                K  +++G    A +++  +   +  S + ++  
Sbjct: 187 SKK---LINKD--------EGKAEFNFKNAFTYGVENPATYKIIAYSLNNGVSGV-LKYF 234

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  V    G+    N+   +  V ++T   ++     +  F    GR +        
Sbjct: 235 EDHVPFVSSLHGFFNLYNITAAMAAVHLVTDESLEKIADVVENFGGVSGRMEVV------ 288

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+   +   P  M+  ++ L +       + + V+      G+  +     + +V 
Sbjct: 289 SESPLVIVDFAHTPDGMEQVLNALKE-------KEVLVV--FGAGGDRDRKKRPLMGKVA 339

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y    V+++  +                 E  D +   I + + D   VVV
Sbjct: 340 VAY-AKKVYVTSDNPR--------------FEDPDAIIEDILAGIEDKSNVVV 377


>gi|196019058|ref|XP_002118918.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
 gi|190577726|gb|EDV18596.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
          Length = 456

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 128/375 (34%), Gaps = 47/375 (12%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++P+    D+L          +   KA  I ITG+ GK+TT  ++   L S     A 
Sbjct: 94  KHNVPIVTDIDLL---------FKACPKANYIGITGTNGKSTTTSLINHILQSNNYKSAL 144

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+    +   L L       +  I EL    L     L    + +IA + +I P HL  
Sbjct: 145 GGNIGIPV---LNLPNFNNSNEHYILELSSYQLD----LMLNYKFNIAALLSITPDHLDR 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-----KSK 254
           ++  E+  +AK  IF          ++ ++   E +  +      +TI         K  
Sbjct: 198 YASFEDYKNAKLRIFNNQNHNDFAIISLNNHINEGIYNQLIIKNTQTIIPTSSQQLLKKG 257

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            +  + + +    E     + L           IG H A+N+ M   I  I+  +    I
Sbjct: 258 ISVIKDKIYDNYFENQAFNLDLP-------SSLIGPHNAENIAMAYTIAKIINLNSKQII 310

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                 +   G   R    L     + +++S   N AS K A+     I     G    V
Sbjct: 311 ---KNLNTYIGLPHRMELFLKTEKLSFVNDSKATNIASTKEALRSFKNIHWIAGG----V 363

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGL 433
                E      + H        +  + H +L G         L + +I       ++  
Sbjct: 364 F---KEKNLDELNNH--------ITEVRHCYLIGQDYKRFISLLEKNNIPYSICNNIENS 412

Query: 434 FLFIQSSLVDGDVVV 448
              I++S+  G V++
Sbjct: 413 IQEIKNSVKSGTVLL 427


>gi|225574517|ref|ZP_03783127.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038248|gb|EEG48494.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
          Length = 451

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 113/349 (32%), Gaps = 38/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K T++AITG+ GKTTT  +L   ++  + +   +G+  N      + A    +    + E
Sbjct: 108 KGTVLAITGTNGKTTTTALLGKIMADHQDSVFVVGNIGNAYT---SAASQMKEESVTVAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I        PH++ I  I   HL+    +EE    K  I +         LN
Sbjct: 165 ISSFQLETIETFA----PHVSAILNITEDHLNRHHTMEEYIRVKELITKNQGCDDYCILN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
           Y+D                 +  F        +            + ++L  K +  +  
Sbjct: 221 YEDEILRKFGENL----TPRVIYFSS-----VRELDEGIFLRDGRIILRLDKKEIPFMKT 271

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N +  + +  +     +   +++  F   E    R      +      
Sbjct: 272 QQLRILGRHNHENAMAAIAMAYVAGVSAEEICRSVCNFQAVE---HRIEFVEEKDGVAYY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +    I  +         R   ++G   + G     +            + 
Sbjct: 329 NDSKGTNPDAAIKGIQAMD--------RPTLLIGGGFDKGSEYDEWIQSF-----DGKVR 375

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ L G     +++A  R        +E ++            GD V++
Sbjct: 376 YLVLIGQTREKIQEAANRLGFHDCILAENLEEAVKICAKKANPGDAVLL 424


>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766048|sp|B8FBS0|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 450

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 120/349 (34%), Gaps = 38/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A IIA+TG+ GKTT   ++   + +   +    G+  N +   +  A+        + 
Sbjct: 106 IQAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGNIGNPL---VNYAKGEDKAQVVVA 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L  I        P +A++T +   H+  + G+E  A++KA +F          L
Sbjct: 163 EISSFQLDTIESFA----PKVALLTNVTEDHMDRYDGMEGYAASKARVFMNQTGADFAIL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  D +   +     A      + F   + A+         +          G       
Sbjct: 219 NGCDKWSRAMCGGIKASQ----WFFTGREEAE---AGIAMNAGAMDF---FTGAQKHWSL 268

Query: 286 H-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N            A V+    A+  F     R +  R  +      
Sbjct: 269 SLKKMTLSGEHNKENAAAAALAAYAAGASVEGIQGAIDAFKGLPHRLEFVREVM---DVK 325

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             D+S   N  ++  A+   +            ++G   + G        DL +++    
Sbjct: 326 YYDDSKATNVDAVLRALEGFNA-------PVHLIMGGRDKGGHF-----RDLKDMVEQKA 373

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++++G     +  AL  S+ V  + T++    F + +   G+VVV+
Sbjct: 374 A-RLYVTGEAAGIITSALSGSVEVVQAGTIEKAVEFAKRAARPGEVVVL 421


>gi|156502247|ref|YP_001428312.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954334|ref|ZP_06558955.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312242|ref|ZP_06803040.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|156252850|gb|ABU61356.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 940

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    G++I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGKKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTATPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|85058335|ref|YP_454037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
 gi|84778855|dbj|BAE73632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 455

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 119/355 (33%), Gaps = 33/355 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+   L          G     +     ++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVAWILEEFG---YQPGFVIGGVPGNFAVSARLGDGPFFVVEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNMEFDHADIFDDLKAIQKQFHHLIRLVPGKGKIILPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D   +   A       +T Y+    +   ++ +K     + S  EV L  + +  V   
Sbjct: 222 NDVNLKHTVAM--GCWSETEYT---GEEGVWRAKKV--APDASGFEVFLHYEPVGTVNWQ 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +  V  +      A +AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMHNALMAVAAVRHVGVQPADACRALDGFINAR---RRLELKGTVNGVTMYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R IAVL      M  MG         L          
Sbjct: 331 AHHPTAILATLAALRS-KVGGTARIIAVLEPRSNTMK-MGLSKNELAPSLGR------AD 382

Query: 403 HVWLSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+L    H+      +  +     H S  +D L   +  +   GD ++V  SN 
Sbjct: 383 EVFLYQPQHIPWQVSEVAEACVQPAHCSADVDTLVEMVVKTAQPGDYILVM-SNG 436


>gi|89256191|ref|YP_513553.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314664|ref|YP_763387.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|167009774|ref|ZP_02274705.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367519|ref|ZP_04983545.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|89144022|emb|CAJ79270.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129563|gb|ABI82750.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253335|gb|EBA52429.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
          Length = 940

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 130/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    G++I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGKKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTATPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|313202239|ref|YP_004040897.1| UDP-N-acetylmuramate [Methylovorus sp. MP688]
 gi|312441555|gb|ADQ85661.1| UDP-N-acetylmuramate [Methylovorus sp. MP688]
          Length = 457

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 131/375 (34%), Gaps = 30/375 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG-- 163
              ++A+ G+ GKTTT  ML   L          IG    +  +   L   P     G  
Sbjct: 102 DKWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFLIGGVPQNFDISARLPGAPRQEPQGRS 161

Query: 164 ---IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + E            +  V  RP  AV+  +   H   F+ +  I +    +   + 
Sbjct: 162 PFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLAAIETQFHHLVRTVP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G +  N  +   + + A+        + +FG +             +E S+  +Q + 
Sbjct: 222 QQGLVVANGREESLQRVIARG---CWTPVETFGDAHG----WHAGAADAEGSFDVIQGEQ 274

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V    +G H   N L  L     +   V+  I AL+ F   +   +R         
Sbjct: 275 VLGRVQWSLLGEHNRMNALAALAAARHVGVPVEVGIAALAEFQNVK---RRMEVRGEVKG 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLS 397
            T+ D+ +  +P ++   +  L   +  G  R +AVL    E    +    +   A   S
Sbjct: 332 ITVYDD-FAHHPTAITTTLEGLR--AKVGASRILAVL----EPRSNTMKLGVMKAALPAS 384

Query: 398 LYNISHVWLSGFHVLA-LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L +   V+  G ++     +AL     +   ET M  L   I      GD ++V  SN  
Sbjct: 385 LKSADRVYCYGANLGWDAAEALHDMGEIALVETDMTKLVEAIAREARSGDHILVM-SNG- 442

Query: 456 GFYRLINLLLEEFPA 470
           GF  +   LLE   A
Sbjct: 443 GFGGIHQKLLERLAA 457


>gi|257899138|ref|ZP_05678791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
 gi|257837050|gb|EEV62124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
          Length = 453

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 109/319 (34%), Gaps = 36/319 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K      G+          +A+     D  + EL    L  I        PHIAVIT I 
Sbjct: 140 KGVARLAGNIGYPASG---VAQEAKPEDKIVMELSSFQLMGITDF----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AH+      +E   AK  + + +     + LN++ S  + L  ++ A     +  F   
Sbjct: 193 EAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQSELQELAQRTKA----RVLPFSTK 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +     L       + +      + K ME+      G H  +N L  + +  +     + 
Sbjct: 249 E----VLEDGVYADDHAIY--YRKEKIMEISELGVPGTHNVENALAAITVAKLYGVSNEA 302

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L +FH       R +           ++S   N  + K A+S            ++
Sbjct: 303 IRQTLHLFHGVP---HRTQYVGEIQGRKFYNDSKATNILATKMALSGFETA-------KV 352

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETM 430
            +L    + G            V SL  I  + + G     L DA  ++    +  ++++
Sbjct: 353 VLLAGGLDRGNTFDEL------VPSLKGIKAMIVFGQTKEKLIDAGKKAGIETIVTADSV 406

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           +        +  DGDV+++
Sbjct: 407 EQAVPLALENSTDGDVILL 425


>gi|251788138|ref|YP_003002859.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
 gi|247536759|gb|ACT05380.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
          Length = 460

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 129/373 (34%), Gaps = 38/373 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T  L          G     +    T++    D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCG---YQPGFVIGGVPGNFTVSARLGDSPFFVVEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  ++ I      +   +   G I +  
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIVPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
            D   + +         + +      +   ++ +K    ++ S  +V L  + + EV  +
Sbjct: 222 HDLHLKQVMGMGCWSEQELV-----GEEGIWKAKKV--TTDASVFQVYLNDQIVGEVDWN 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R          ++ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINAR---RRLELRGTAHGVSVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++ A ++ L      G  R +AVL      M  MG         L          
Sbjct: 331 AHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-MGHCKNELAPALGR------AD 382

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L         V  + DA  +     +S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 GVFLFQPQHIPWQVAEVADACVQ--PAWWSADIDTLVEMINKTAQPGDHILVM-SNG-GF 438

Query: 458 YRLINLLLEEFPA 470
             + N LL+   A
Sbjct: 439 GNIHNKLLDALNA 451


>gi|289805212|ref|ZP_06535841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 391

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 122/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M T  L +        IG    +  V   L   P    F + E  
Sbjct: 39  VLAVAGTHGKTTTAGMATWILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEAD 94

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I   
Sbjct: 95  EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWP 154

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D   +   A       + +      +   +Q +  K  ++ S  EV L G+ + +V  
Sbjct: 155 ENDINLKQTMALGCWSEQELV-----GEQGHWQAK--KLTTDTSEWEVWLDGEKVGDVKW 207

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A  AL  F       +R          T+ D+ 
Sbjct: 208 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD- 263

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R IAVL      M  MG         L         
Sbjct: 264 FAHHPTAILATLAALRG-KVGGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------A 315

Query: 402 SHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L       + V  + DA  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 316 DEVFLLQPPHIPWQVSEVADACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG 370


>gi|254369189|ref|ZP_04985201.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122139|gb|EDO66279.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 940

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 129/387 (33%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     I+  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NP ++K    ++  ++    G++I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPVAIKLVSQMI--MNMEFAGKKICV 781

Query: 375 LG--------DMCEMGELSQSFHIDLA----EVLSLYNISHVWLSGFHVLALKDALPRSI 422
           L         D+ E+ + +  ++        +         V        AL +A   + 
Sbjct: 782 LASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRI--LKEALIEAGISAD 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   E+         +   +GD+VV+
Sbjct: 840 NIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|326390379|ref|ZP_08211938.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993656|gb|EGD52089.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 876

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 135/410 (32%), Gaps = 50/410 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILHAV-- 61
           +   D+ +  Q   +         GI+ID +  I P     A++     G D     +  
Sbjct: 365 FDLEDIPKKGQKVFLRESANLSTGGIAIDKTDDIHPYNIEIAVRAAKAIGLDIAGIDITM 424

Query: 62  ---------QKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
                    + GA + +  +    +    S   P     +V  A+  +      ++   I
Sbjct: 425 EDIKKPLTKENGAIIEINASPGIRMHHYPSKGKP----RNVAKAIVDMLFPKGSKATIPI 480

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLARMPVDV 160
           I+ITG+ GKTT   M    L +   T     +   +I            P +      D 
Sbjct: 481 ISITGTNGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADK 540

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLE 218
           +     L  +  G IR         + VIT I+  HL       +E++A  KA + E ++
Sbjct: 541 NIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVK 600

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQC 266
           + G   LN DD     L  ++       I  F    N                ++     
Sbjct: 601 EDGYSVLNADDPMTTYLAQRAKG----KIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIV 656

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +   ++ + +     G   +  +N L  +     +   V+   K +  F+     
Sbjct: 657 IANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFYCDTTH 716

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   N G F ++ + Y  N A +K+ I    ++  +   R I V+G
Sbjct: 717 NPGRFNLFNVGNFRVLVD-YGHNIAGIKSVIEAAQKLDAN---RLIGVIG 762


>gi|330686337|gb|EGG97942.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU121]
          Length = 449

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 126/346 (36%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++     + + T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIG---YVASKVAQEVSSKEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + + ++       
Sbjct: 222 N----YHQRHLIESENLKAKTLY-FSTQQVVDGIYIKDGFIEYKGVRI-ISVED------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +     +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFS---GIEHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++  +Q         I  L    + G            +  + N+  +
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNEFDEL------IPYMKNVRVM 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G            +  +V  +  +      IQ  +   DVV++
Sbjct: 373 VVFGETQEKFAKLGNSQGKYVIKATDVQDAVDKIQDVIEPNDVVLL 418


>gi|260910909|ref|ZP_05917551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634966|gb|EEX53014.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 443

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 114/350 (32%), Gaps = 29/350 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A ++ ITGS GKTTT  ++     +        G+    + + +         
Sbjct: 95  FAGRYTDAKMVCITGSNGKTTTTSLIYHIFKTAGYNVGLGGNIGRSLALQV----AEGAH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + EL    L ++    +  + HIAV+  I P HL  ++  ++    AK  I + L  
Sbjct: 151 DWYVIELSSFQLEDM----YRFKAHIAVLLNITPDHLDRYNYRMQGYVDAKMRILQNLTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K        +  F ++               Q  +   L   
Sbjct: 207 QDYFIYWGDDPVVKPELQKYDVSA--HVCPFAENSETGMSAY---VADGQVTLPAPLDFT 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +      G H   N L                 + LS F   E R +R          
Sbjct: 262 MPQDRLSLPGKHNLYNSLAAALAARAAGIPQSVVEQGLSDFPGVEHRMERVATMH---GV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  + + A+  ++          I ++G     G+   + +  + E++   
Sbjct: 319 NYINDSKATNVDACRYALEAMNT-------PTILIIG-----GKDKGNDYEPIKELVKEK 366

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L   +    ++     + V  + +M    +   +    G  V++
Sbjct: 367 CAGLVYLGADNTKLHQNFDQLGLPVADTHSMKDCVMVCANMAKTGYTVLL 416


>gi|213963298|ref|ZP_03391555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
 gi|213954160|gb|EEB65485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
          Length = 447

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 114/348 (32%), Gaps = 39/348 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GKTTT  +               G+                +  + + E+  
Sbjct: 104 IVGITGSNGKTTTTLLTHQIFKDAGLQVGLGGNIGYSFAE----LVATENPPYYVLEISS 159

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L  I        PHIAV+  I P HL  +    E   ++K  I     +   +  + D
Sbjct: 160 FQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYIASKFRIAMNQTENDYLIYDAD 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---- 284
           D   E    ++H L +K +  F   K   +         + + + + L+ ++ E      
Sbjct: 216 DPVIEEWL-QNHILKVK-LIPFSIEKELPYGA-----FLKDNKIHIMLENQTAETTEIDV 268

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +       ++    ++   +L  F   + R +  +        T +
Sbjct: 269 EEISLRGKHNIKNTMAASVAARLVNIRNNSLRDSLKGFKGVDHRLEEVKVVE---GVTYV 325

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S+  A+  +        G            G+   + +  L   +    + 
Sbjct: 326 NDSKATNVNSVYFALDTIKTPIVWIVG------------GQDKGNDYNALLPYVHE-KVK 372

Query: 403 HVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     +  +       +  +++MD      +    +GD V++
Sbjct: 373 AIVCLGVDNEPILRSFSNSGKEMIETQSMDEAVRIAKKFATEGDTVLL 420


>gi|145297483|ref|YP_001140324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850255|gb|ABO88576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 427

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 127/348 (36%), Gaps = 42/348 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  +IAITGS GK+T   ++   ++         G+        L L + P+D    
Sbjct: 93  RETQVPVIAITGSNGKSTVTTLVGEMIAEAGLKVGVGGNIGTP---ALELLKQPMD--LC 147

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI +    +  I
Sbjct: 148 VLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH---SKHI 200

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD       A++     +   SFG   N       + +C       + L G+ +  
Sbjct: 201 LVNRDD-------AQTQPDVGQVWQSFGLDCNG------YGRCLLDGRHWLTLHGEPLLP 247

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V     +G H   N L  + +   +    +     L+V    EG   R R          
Sbjct: 248 VDEMKIVGAHNQANALAAMALCDAVGIPRE---PQLAVLRRFEGLPHRARFVREVNGVRW 304

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N   + A ++ ++ +    +GR + + G   +  +          + L  + I
Sbjct: 305 INDSKATN---VGATLAAVAGVREAVKGRLLLLAGGQGKGQDFGP------VQALLGHQI 355

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            H++  G     L   L           +D       +    GD V++
Sbjct: 356 DHMYCFGQDADIL---LALGEQTERVSDLDAAVAKAAADARPGDWVLL 400


>gi|270159563|ref|ZP_06188219.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|289165641|ref|YP_003455779.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269987902|gb|EEZ94157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|288858814|emb|CBJ12728.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
          Length = 454

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 124/357 (34%), Gaps = 33/357 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +IA++G+ GKTTT  M+   L          IG  ++       L        + + E  
Sbjct: 105 VIAVSGTHGKTTTTSMIAWILHQAGLNPGFLIGGVSSDFKTSACLG----SGKWFVIEAD 160

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S   + R      RP IA++  +   H   ++ +  I          +  +G     
Sbjct: 161 EYDSAFFDKRPKFMHYRPRIAILNNLEFDHADIYTDLAAIQLQFHYFLRTIPASGVAIKP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             D     + A+     I+ +       +A +  +  +     S  +V   GK +  V  
Sbjct: 221 CHDQALNEVIARGQYSRIEEL---SLDGDAQWSAKLLE--DNGSAFKVLYLGKEVAKVNW 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N L  L          + A +AL  F P +   +R     N    T+ D+ 
Sbjct: 276 PLIGRFNVENGLAALAASVNAGVSPEVAARALERFTPVK---RRLEVRSNMHGITVYDD- 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +P +++  +  L   + H   R  AVL +       +     ++A  L   +     
Sbjct: 332 FAHHPTAIRRTVDALKGSNRHQ--RIFAVL-EFASYTMRTGVHATEMAHALESVH----- 383

Query: 406 LSGFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             G +VL  +D        H+       ++ D +   +  ++  GD V+V S+    
Sbjct: 384 --GAYVLEPQDFDLHKTLDHWTCPYTICKSHDEIVNEVSKAVQAGDAVLVMSNRGFN 438


>gi|257888485|ref|ZP_05668138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
 gi|257824539|gb|EEV51471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
          Length = 453

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 109/319 (34%), Gaps = 36/319 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
           K      G+          +A+     D  + EL    L  I        PHIAVIT I 
Sbjct: 140 KGVARLAGNIGYPASG---VAQEAKPEDKIVMELSSFQLMGITDF----HPHIAVITNIY 192

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AH+      +E   AK  + + +     + LN++ S  + L  ++ A     +  F   
Sbjct: 193 EAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQSELQELAQRTKA----RVLPFSTK 248

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +     L       + +      + K ME+      G H  +N L  + +  +     + 
Sbjct: 249 E----VLEDGVYADDHAIY--YRKEKIMEISELGVPGTHNVENALAAITVAKLYGISNEA 302

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L +FH       R +           ++S   N  + K A+S            ++
Sbjct: 303 IRQTLHLFHGVP---HRTQYVGEIQGRKFYNDSKATNILATKMALSGFETA-------KV 352

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETM 430
            +L    + G            V SL  I  + + G     L DA  ++    +  ++++
Sbjct: 353 VLLAGGLDRGNTFDEL------VPSLKGIKAMIVFGQTKEKLIDAGKKAGIETIVTADSV 406

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           +        +  DGDV+++
Sbjct: 407 EQAVPLALENSTDGDVILL 425


>gi|223937423|ref|ZP_03629328.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
 gi|223893974|gb|EEF60430.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
          Length = 477

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 128/357 (35%), Gaps = 34/357 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                 +SK   IAI G+ GK TT E++   L+   +  +  G     +    ++     
Sbjct: 99  FELGFQQSKCLSIAIAGTNGKGTTAELVESILTHNNRKTSLCGHGARPV---CSVVPETK 155

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           ++DF + +     L      T   RP +AV+  +A  HL  ++   +   A A +F+  +
Sbjct: 156 EMDFLVLQANSFQL----ETTQFFRPAVAVLMNLAHDHLDRYATHADYVRANARLFQNQQ 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +         L+     +  K I     ++ AD  L       ++  +  +L G
Sbjct: 212 AFDWAIV--QSEALAQLRLLDVPIPSKIITFSANNRRADIFL-------DRGLLISRLPG 262

Query: 279 KSMEVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               + +       G H A+N++  L +  +L   ++  + A      K     R+    
Sbjct: 263 WEGPLWNMDECLLRGSHNAENVMAALAVGHVLRIPLEEIVNA---LKTKAPGAHRFEFVA 319

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDL 392
                  I++S   N  +++ A   L  + P   G      + G      + S  +H D+
Sbjct: 320 EVNGVKYINDSKATNVDALQKA---LLSVPPAPAGEPNIWLIAGG----KDKSLDYH-DV 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++S   +   +L G     ++ A           ++         S V GDV+++
Sbjct: 372 GPLMSQR-VKGAFLIGEAREKIRAAWSLFTPCTTVSSLLEAVGAAGKSAVPGDVILL 427


>gi|88858533|ref|ZP_01133175.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (Murein peptide ligase)
           [Pseudoalteromonas tunicata D2]
 gi|88820150|gb|EAR29963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (Murein peptide ligase)
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 137/370 (37%), Gaps = 37/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     L+    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTASMLAWILEYAGLK---PGFLIGGIVQNFGLSARLGETPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F+ +  I      +   + + G +    
Sbjct: 162 YDTAFFDKRSKFVHYLPRTLIMNNLEFDHADIFADLAAIERQFHHLMRIVPQNGKVIYPS 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D++  + + A+         +S  +    D++        + S   V+L G+++ +V   
Sbjct: 222 DEAALQRVIAQG-------CWSETEQLGQDWRYELV--NPDSSAFLVKLAGQTLGQVNWQ 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N +M +     +   V+++I+AL+ F   +   +R     N     + D+ +
Sbjct: 273 AMGEHNVKNAMMAIAAARHVGVPVESSIEALAEFISPK---RRMELKANIADICVYDD-F 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVW 405
             +P ++K   + L+ +      ++I     + E    +    +    +L SL     V+
Sbjct: 329 AHHPTAIK---TTLAGLRAKVGLQKI---HAILEPRSNTMKMGVHKTTLLDSLAGADEVY 382

Query: 406 LSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----Y 458
           +  F    L  +L    +       + +  +   + +    GD +++  SN  GF     
Sbjct: 383 V--FEPKQLDWSLQQAAQDAGAQCYDDVAAIVSDVVAKADKGDQILIM-SNG-GFEGIHE 438

Query: 459 RLINLLLEEF 468
           ++I  L  ++
Sbjct: 439 KIIKALQSKY 448


>gi|238916668|ref|YP_002930185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
 gi|259509787|sp|C4Z534|MURD_EUBE2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|238872028|gb|ACR71738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
          Length = 450

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 121/350 (34%), Gaps = 30/350 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K  IIAITG+ GKTTT  ++   +++  +    +G+  N     +       +  
Sbjct: 102 AYNYDKGKIIAITGTNGKTTTTALVGQIIAAYNEKTFVVGNIGNSYTGEVLK---TSEDS 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+    L       H   P ++ I  I P HL+    +E  A  K  I E   K  
Sbjct: 159 YTVAEISSFQL----ETVHEFHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKAD 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T  LN +D +      +  A     +  F   +          +  + +         ++
Sbjct: 215 TCVLNLEDKYLTDFAPECKA----NVVWFSSERKPSVGAYVDGEMIKYTDGTNDYDMLNV 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               + +G H  +N+   + +        D  I+ +  F   E    R      +     
Sbjct: 271 -HDMNLLGKHNYENVCAAIAMTKAAGIPDDIIIEQVKKFKAVE---HRIEYVATKNGVDY 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   NP +   AI  + +         I + G   +  E     ++          +
Sbjct: 327 YNDSKGTNPEAAVKAIEAMVK-------PTILIGGGYDKGSEF--DLYVK----AFKDKV 373

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L G     + D   +    ++ Y+++M+ +      + V GD V++
Sbjct: 374 KLLVLIGQTSAKIADTCKKYGFENIEYADSMEQVVDICAKNAVSGDAVLL 423


>gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
 gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 809

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 140/436 (32%), Gaps = 53/436 (12%)

Query: 47  KGPH-YDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           KG   + GHD   + H        VVV +  +A      +        L  L++  + ++
Sbjct: 48  KGARCFSGHDSSHVPH------DAVVVYSSSIAPDNVEYLTAIQRSSRL--LHRAELLSQ 99

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L      I ++GS GKT T  ++       +K      SY         L          
Sbjct: 100 LMEGYESILVSGSHGKTGTSSLIRAIFQEAQKDP----SYAIGGLAANCLNGYSGSSKIF 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + E   S      +      P   VIT I   HL+     ++ +     +    +     
Sbjct: 156 VAEADESDGSLKHYT-----PRAVVITNIDNEHLNNYAGNLDNLVQVIQDFSRKVTDLNK 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +F N D    +         G     S+G S      +  + Q + QS       G+  +
Sbjct: 211 VFYNGDCPILK---------GNVQGISYGYSPECQLHIVSYNQKAWQSHFSFTFLGQEYQ 261

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G H A N     G+      D++   KAL  F     R +R     N     L
Sbjct: 262 DIELNLPGQHNAANAAAACGVALTFGIDINIIRKALKKFSGVHRRLER----KNISESFL 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLY 399
             E Y  +P  +      L  +      RR+  +        L +         +     
Sbjct: 318 FLEDYAHHPVEVA---HTLRSVRDAVGLRRVIAIFQPHRFSRLEECLQTFPKAFQEADEV 374

Query: 400 NISHVWLSGFHVLA------LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++ V+ +G           L + + +S +VH  Y    D +  ++++ +   DV V   
Sbjct: 375 ILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPHGD-IVDYLRNYIRIHDVCV--- 430

Query: 452 SNSCG-FYRLINLLLE 466
           S   G  Y +   L +
Sbjct: 431 SLGAGNIYTIGEALKD 446


>gi|313205089|ref|YP_004043746.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444405|gb|ADQ80761.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 486

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 138/398 (34%), Gaps = 51/398 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V     L+IP+    +VL  + +             IA+ G+ GK+TT  M+   +    
Sbjct: 116 VQKAKELNIPILRRSEVLALIAE---------SKKTIAVGGTSGKSTTSAMIFDIMQYAG 166

Query: 135 --KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              +        + I             ++ + E   S    +++      P I ++  I
Sbjct: 167 LEPSIISGAGLTSIIREGKIGNAKVGKGEWLVIEADESDGSIVQY-----HPEIGLLLNI 221

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H      I+E+        +  ++      N  +     L   +             
Sbjct: 222 DKDHQE----IDELMEIFGTFRDNTKE--IFITNRSNKLAAKLSVAAANDFATA-----A 270

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S+ A +    + Q      ++  + G ++++  + +G H  +N L  L +V  L    DT
Sbjct: 271 SEGAGYTGTDFVQ--NGLHIQFSINGTTIKM--NTVGAHNMENALAALAVVHRLGVSFDT 326

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A +A       EG  +R++    +    LID+ Y  NPA   A+I+    ++P    + I
Sbjct: 327 AAEA---LTQYEGIYRRHQIIGEKHGVLLIDD-YAHNPAKCAASIAACQPVAP----KLI 378

Query: 373 AVL--GDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLA-------LKDALPR 420
           A            L   F  D+A VL   +   +S ++ +G   +        ++D    
Sbjct: 379 AWFQPHGYKPTRFLRDDFVHDIAAVLRPQDEIWMSEIFYAGGSAVKDISANDLIEDLKKL 438

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +  + E  + L   I+  L    V+++  +      
Sbjct: 439 GKNAFFVENRNNLTEAIKPHLEAQTVLLLMGARDPSLE 476


>gi|291296384|ref|YP_003507782.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus ruber DSM 1279]
 gi|290471343|gb|ADD28762.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus ruber DSM 1279]
          Length = 457

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 127/381 (33%), Gaps = 47/381 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + +TGS GKTTT  ML     +           +  + +   L  +      G     ++
Sbjct: 104 LGVTGSHGKTTTTSMLASIFIAA--------QTDPTVLLGAELGLIGGSAKVGSGRYRIA 155

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLS--------NFSGIEEIASAKAEIFEGLEKTGT 222
            + E   L   +   +AV+T +   H+S          +  E +  A        +    
Sbjct: 156 EVDESDPLFRFLELDVAVLTNLEADHVSPDGQARPNYHTSFEALQEAVGSFAGRAKH--- 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N  +  ++LL A +     +   SFG     D   ++       S  E+  QG+S+ 
Sbjct: 213 VIYNG-EPRWQLLDALTQG---RPRSSFGL-LTGDCHAKEIALEPFGSRFELVWQGRSLG 267

Query: 283 VVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            VH    G H   N L       +     +   + L  +    G  +R+   + +    L
Sbjct: 268 PVHLQVPGEHNITNALAASAAALVAGIPFEAIQQGLYQYT---GASRRFE-KIGELNGAL 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVLSLY 399
           I + Y  N   + A +           G R+  +      G   Q    +    E     
Sbjct: 324 IVDDYAHNATKLFALLKAARNT-----GLRVRAVFQPHRYGRSEQEWPLYAQALEQADET 378

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +  V+ +G              + + L         ++ +    +++ S   G++++  
Sbjct: 379 LLLDVYAAGEAPLQLTSAQIAQRILEHLRAKGRWASYQSWESALDYLRQSAAPGELILTI 438

Query: 451 SSNSCGFYRLINLLLEEFPAI 471
            + +   +RL  LL+ E  A+
Sbjct: 439 GAGNV--FRLGRLLVTEKEAV 457


>gi|330815491|ref|YP_004359196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Burkholderia gladioli BSR3]
 gi|327367884|gb|AEA59240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 131/379 (34%), Gaps = 38/379 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLVRNVPGIGRIVSN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             ++  E + A+        +  FG                 E     V  +G+ M EV 
Sbjct: 221 GRETALERVLARG---CWSEVERFGVEGGWQALPAEDGVPVDE--RFAVYWRGERMGEVE 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L  +     +      A ++ S F   +   +R     +    T+ D+
Sbjct: 276 WTVQGEHNRQNALAAIAAARSVGVPPAQAARSFSAFRNVK---RRMEIRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I+ L         R +AVL      M  +G +       LA+      
Sbjct: 333 -FAHHPTAIETTIAGLRARVGREHTRILAVLEPRSNTMK-LGTMKAQLPGSLAD------ 384

Query: 401 ISHVWLSGFHVL------ALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G          +L DA LP        + ++ L   + ++   GD ++V  SN
Sbjct: 385 ADLVFGYGAAAGRDALGWSLADALLPLGARAQAFDDLNALVKAVTAAARPGDQILVM-SN 443

Query: 454 SCGFYRLINLLLEEFPAIQ 472
             GF  +   LL+   A Q
Sbjct: 444 G-GFGGVHQKLLDALGARQ 461


>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
 gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
          Length = 463

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 121/356 (33%), Gaps = 35/356 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+             +IAITGS  K+T    L  AL +  +     G+    +     L 
Sbjct: 114 LSSDIELFLSEFNGKVIAITGSNAKSTVTAWLGEALKAGGQKTLVAGNIGIPV-----LE 168

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + EL    L     L   V   IA +  I+  H+  +  +     AK +I+
Sbjct: 169 TDHAAYDVAVLELSSFQL----ELLSRVNADIACVLNISEDHMDRYETLAHYVQAKQKIY 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWME 273
            G     ++  N  D+  + L        +K  ++        + LRK           +
Sbjct: 225 FG---AASVLYNRSDALTQPL---VPDHVLKRTFASDAPDLNHYGLRKQDGNEWLAQGFD 278

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           + L    +       G H   N L  L +  +   D    + AL+ F     R +  R  
Sbjct: 279 LVLPVSEVA----LPGGHNVMNALAVLALADMAGNDRSATLTALTSFSGLPYRCQAIR-- 332

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +   T I++S   N  S  AA+  L  +          + G   +  +LS      LA
Sbjct: 333 -ERAGITFINDSKATNVGSTTAALEGLVSVR---GANIHLLAGGQAKDQDLSP-----LA 383

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           EV+       V+  G      +  L  +      ET+   F    ++  +GD+V++
Sbjct: 384 EVIEQT-CKQVYAFGQD---RQQFLALTDRAVECETLSEAFAKANANAQEGDIVLL 435


>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS155]
 gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS155]
          Length = 439

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 153/450 (34%), Gaps = 63/450 (14%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       +F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGAETLATSFPDVKLISGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                +   T  V +   + I V G  +    L    +A R   K  +I ITGS GK+T 
Sbjct: 71  IISPGIATYTPEVRAAVDMGIEVIGDVE----LFAREIADR---KPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++           A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMAREAGIAVAVGGNIGVP-----ALDLLHENADLFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKS 239
           +  +A    I+  H+  +S I     AK  ++   +++  +  N DD      E +   S
Sbjct: 175 KCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFNRDDKLTVPPEPMNQNS 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L       +G S +     + +   SE   +               IG H   N+L  
Sbjct: 232 FGLAAPETDEWGISDS-----KIYHGSSEIMPIT----------EVSLIGSHNHANLLAA 276

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +V ++  D     K    F    G   R      +   T +++S   N  +  AA+  
Sbjct: 277 MALVDVVGVDKQVMAKVARSFT---GLSHRCEVVGIKNGVTYVNDSKATNVGATVAALDG 333

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS       G  I + G     G+   +    L   ++L  ++H+   G     +     
Sbjct: 334 LSD----HLGDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKD 382

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ V   ETM             GD+V++
Sbjct: 383 GAVRV---ETMAAAVTKAAELATSGDIVLL 409


>gi|317011629|gb|ADU85376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori SouthAfrica7]
          Length = 447

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 135/404 (33%), Gaps = 54/404 (13%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +     P+    + L  L+   +      K  II ITG+ GKTTT  ++   L  + K 
Sbjct: 37  PLNEKYAPLMEAKN-LDILDFNELKNYFDFKIKIIGITGTNGKTTTASLMYSLLLDLNKK 95

Query: 137 YACIGSYNNHIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHL 181
            A +G+    I             TL  +  D++  +      F + +S    ++     
Sbjct: 96  AALLGTRGFFINDKRIKEKGLTTPTLLELYSDLEEAMRLECEYFIMEVSSHAIVQERIAG 155

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKS 239
           +   + ++T I   HL     +E    AK   F   +  G   +N D  ++ F  + A++
Sbjct: 156 LDFALKILTNITSDHLDFHKSLENYRDAKNSFF---KDEGLKVINRDETNALFNPINART 212

Query: 240 HALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +AL  K    + +F  + +    L       + +  E  L      +    +G +   N+
Sbjct: 213 YALDKKAHLNVQAFSLNPSISASLCYQHDLRDPNVKETAL------IHSPLLGRYNLYNI 266

Query: 297 LM-TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           L   LG+  +    ++     L  F+  +GR +            L+   +      M+ 
Sbjct: 267 LAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEIVHPK------PLVVVDFAHTTDGMQQ 320

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------- 408
                         +  A+ G     G+  ++    +  + S Y    +  S        
Sbjct: 321 VFESFKSQ------KITALFGA---GGDRDKTKRPKMGAIASYYAHKIILTSDNPRSENE 371

Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  +   +     V   +      L    +L D +V+++  
Sbjct: 372 EDIIKDILKGINDLSKVITEKDRKKAILNALENLKDDEVLLILG 415


>gi|117924035|ref|YP_864652.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
 gi|117607791|gb|ABK43246.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
          Length = 466

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 119/378 (31%), Gaps = 42/378 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
            +      L  +  I+A TG+ GKTTT  ML              IG      G      
Sbjct: 93  AEWFQKFVLEGRHPIVA-TGTHGKTTTSSMLARLWEEAGWEPGFLIGGIPADFGRGSRFP 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + P    + + E               +  RP   ++  +   H   ++ +E I      
Sbjct: 152 KGP----WVVVEGDEYDTAFYDKRPKFLHYRPRTLILNNLEFDHADIYADLEAIRVQFRL 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   + ++G + +N DD     L   +       +  +G   +  ++ R   Q     W 
Sbjct: 208 LLRTVPRSGVVLINGDDEEVTKLAEYA----CSPVLYYGIHGDYHYRAR-LNQKDGSHWT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            ++ + +  +V    +G H   N L               A    +      G  +R + 
Sbjct: 263 LIKEEQELFDVAWGQVGMHNIYNGLAAASAALEHGMP---AHVVKAGLEGFSGVARRLQV 319

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G  TL D+ +  +P ++K  +  L   +  G+ R  A++         S +    +
Sbjct: 320 RAQLGGVTLYDD-FAHHPTAIKTTLEGLR--AKVGQARIWAIIE------PRSNTMRRKV 370

Query: 393 --AEVLSLYN-ISHVWLSGFHVLALKDALPRSIHV-------------HYSETMDGLFLF 436
             + +  +      V         L      ++ V               +E ++ +   
Sbjct: 371 HQSRLAGVLGRADRVIFVRPEDKRLHSDELLNVDVVVGEINRAGLNWARVAENVENIVQM 430

Query: 437 IQSSLVDGDVVVVKSSNS 454
           +   L  GD ++V  SN 
Sbjct: 431 VGEDLRPGDHLLVM-SNG 447


>gi|311281223|ref|YP_003943454.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
 gi|308750418|gb|ADO50170.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 139/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    D  F + E            +  V   P  
Sbjct: 124 ILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I     D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPESDINLKQTLALGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +K    ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAKKI--STDASEWEVWLDGEKVGEVKWGLVGEHNMNNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A +AL  F       +R           + D+ +  +P ++ A +  L     
Sbjct: 294 VGVQPGDAAQALGSFINAR---RRLELRGEANGVAVYDD-FAHHPTAILATLQALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + D
Sbjct: 349 GGTARIIAVLEPRSNTMK-MGVCKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVAD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   I  +   GD ++V  SN  GF     +L+  L ++  A +
Sbjct: 402 ACVQ--PAHWSADVDTLADMIVKTAQPGDHILVM-SNG-GFGGIHQKLLAGLAKKAEAAE 457


>gi|254563999|ref|YP_003071094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens DM4]
 gi|254271277|emb|CAX27289.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens DM4]
          Length = 455

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 21/266 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  +    L    +     G+    I         P      + 
Sbjct: 112 PDAPFVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILS----LEPPAANRVHVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +     LT  ++P + ++  + P HL     +E  A+ K  +  G        +
Sbjct: 168 ELSSFQID----LTPSLKPGVGILLNLTPDHLDRHGTMENYAAIKERLVAG---ADLAVI 220

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DD +   +  +     I+  +   G +           +  + + +        +  +
Sbjct: 221 GVDDPYCAAIAERRTGERIRLHVEGHGDAAGDYVGANGTVRGPDGAVI------AEVTGI 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  QN    +     L           +      G   R       G    +++
Sbjct: 275 QALLGDHNLQNAAAAVAAAIRLGLSGAEIA---AGLKSFPGLAHRMEPLRRIGPTLFVND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGR 370
           S   N  S + A+     I     G+
Sbjct: 332 SKATNADSTEKALLAFRDIHWIVGGK 357


>gi|212712755|ref|ZP_03320883.1| hypothetical protein PROVALCAL_03852 [Providencia alcalifaciens DSM
           30120]
 gi|212684671|gb|EEB44199.1| hypothetical protein PROVALCAL_03852 [Providencia alcalifaciens DSM
           30120]
          Length = 441

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 126/347 (36%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++     S   +    G+          ++ +       
Sbjct: 106 READAPIVAITGSNGKSTVTSLVGEMAKSAGISVGVGGNIGIP-----AVSLLNQGHSLF 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A +  +   H+  +  G+E+  +AK  I++  +    
Sbjct: 161 VLELSSFQL----ETTSSLRAAAATVLNVTEDHMDRYPLGLEQYRAAKLRIYDNAKH--- 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D          H   +    SFG +    +   + +    Q  + + +      
Sbjct: 214 CIVNAQDPL-----TLPHHQELSQCTSFGLNSGDYYFDTQKRVLVAQGEVVLDV------ 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              H  G H   N L  L +   +    + +I+   V     G   R++  L       I
Sbjct: 263 TKMHLTGQHNYMNALAALALADTVAIPREASIQ---VLKEYAGLVHRFQLVLFNRGVRWI 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L     H +G    +LG   +  + S      L + ++  N  
Sbjct: 320 NDSKATNVGSTEAALNGL-----HVDGTVYLLLGGDGKSADFS-----SLKKYIAADN-Y 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L   +P    +  +ETM+     I   L  GD+V++
Sbjct: 369 RLYCFGRDGQQLAQLVPEKSVL--TETMEQSMRQIAPLLKSGDMVLL 413


>gi|89074172|ref|ZP_01160671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
 gi|89050108|gb|EAR55634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
          Length = 446

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 121/347 (34%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++AITGS GK+T   ++              G+          L  +       
Sbjct: 104 REVDKPVVAITGSNGKSTVTSLVGEMAKEAGVNVGVGGNIGF-----AALDMLAQQHALY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +    AV   ++  H+  +  G+ + + AK  IF+       
Sbjct: 159 VLELSSFQL----ETTTSLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKL 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD       A         + SFG     D+          + W+ V  +     
Sbjct: 212 AVFNRDD------LATKPTQFSGAMTSFGFDDQ-DY---GIVLVDGKEWLAVNGEAVMAV 261

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N L  L +        D A +A        G   R + A+N+     +
Sbjct: 262 TDIALVGRHNVANCLAALALADAAGIPRDAAYRA---MQRYTGLAHRCQLAVNRHGVRWV 318

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N AS  AA++ L       EG+   ++G     G+   +   +L  +L+  N+ 
Sbjct: 319 NDSKATNLASTLAALNGLQ-----LEGKLHLLMG-----GDSKGAEFSELKPILADLNV- 367

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G       D +  +I V   ETM    + I  ++  GD+V++
Sbjct: 368 QLYSFGRDRHLFNDVVDNAISV---ETMKDAMVCISRTVQSGDMVLL 411


>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 135/418 (32%), Gaps = 68/418 (16%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    +     +  +PV G  +       L   AR       ++ ITG+ GK+TT  
Sbjct: 73  GVPLNRHPIADHARAAGVPVIGDIE-------LFAQARADLPPHRVVGITGTNGKSTTTM 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++    ++        G+    I     L     +    + EL    +     LT  +  
Sbjct: 126 LVHHICAAAGLPARLGGNIGLPILGQEPL----PEGGVYVLELSSYQID----LTQSLAC 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A +  ++P HL  + G    A++KA +F              D     +  ++ A   
Sbjct: 178 DVAALINLSPDHLDRYDGFAGYAASKARLFAMQRADQHAVFGCGDEHTLEIAREASATHD 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                             +    + S +  QL+  S++      G H  QN  + + I  
Sbjct: 238 ----------------TGFVHVVQPSALHGQLEWPSLQ------GPHNLQNAAIAVEIAR 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D    AL+ F     R +R            +++S   NPAS   A+    +I 
Sbjct: 276 QLGIAEDIWRSALASFVGLPHRMERV---AEANGVLFVNDSKATNPASTAPALGAYPRIH 332

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G     L     + E +  F   +A           +  G       + L   + V
Sbjct: 333 WILGG-----LPKSDNLDECAPYFDHVVAA----------YTIGEAGPRFAEILEPVMPV 377

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEEFPA 470
             SE +         +   GDVV++    +S             F +++  L+E+  A
Sbjct: 378 TRSEMLCDAVRQAMEAAQPGDVVMLSPACASFDQFRDFEARGDSFRQIVEALIEDREA 435


>gi|317013264|gb|ADU83872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Lithuania75]
          Length = 447

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 133/395 (33%), Gaps = 53/395 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  I      F + +S    ++     +   + ++T
Sbjct: 105 FINDKQIKEKGLTTPTLLELYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK--- 245
            I   HL     IE     K   F   +  G   +N D  ++ F  + A ++AL  K   
Sbjct: 165 NITSDHLDFHQNIENYRDIKNSFF---KDEGLKVINRDETNALFNPINAHTYALDKKAHL 221

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVS 304
            I +F  +      L   +   + +  E+ L      +    +G +   N+L   LG+  
Sbjct: 222 NIQAFSLNPFISASLCYQQDLRDPNLKEIAL------IHSPLLGRYNLYNILAGVLGVKL 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++T    L  F+  +GR +            L+   +      M+          
Sbjct: 276 LTQLPLETIAPLLENFYGVKGRLEIVHSQ------PLVVVDFAHTTDGMQQVFESFKNQ- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKD 416
                +  A+ G     G+  ++    +  + S Y    V  S           +  +  
Sbjct: 329 -----KITALFGA---GGDRDKTKRPKMGAIASCYAHKIVLTSDNPRSENEEDIIKDILK 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  S  V   +      L    +L D +V+++  
Sbjct: 381 GINNSSKVVVEKDRKKAILNALENLKDDEVLLILG 415


>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
          Length = 443

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 156/448 (34%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-----AF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P        F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLHGLGITPLVMDSRQQPPGADKLAAEFPDVELISGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                + ++T  + +   + I V G  DV     +L   A     A +I ITGS GK+T 
Sbjct: 71  IVSPGIAIDTPEIRAAIDMDIEVIG--DV-----ELFARAVKERDACVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++     +    YA  G+    +     L  +  D++  + EL    L      TH +
Sbjct: 124 TTLVAEMAKAAGINYAVGGNIGIPV-----LDLLQSDIELYVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A    I+  H+  +S IE    AK  ++     T     N +D   +     +   
Sbjct: 175 NCISATCLNISEDHMDRYSDIEAYRQAKLRLYSQ---TRFALFNREDELTKPKDPMNQN- 230

Query: 243 GIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG S  + D       +    S   + LQ          +G H   N++  + 
Sbjct: 231 ------SFGLSLPDNDEWGVCEGKIVHGSVEVISLQD------VALVGSHNHANLIAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      +    ++  S F    G   R+   +N+     I++S   N  +  AAI  +S
Sbjct: 279 LAYQAGIEKAAMVEVASSFT---GLEHRFEMVVNRNGVAYINDSKATNVGATVAAIEGIS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +      G  I + G     G+   +    L  VL    +SH+   G     +      S
Sbjct: 336 E----HLGDIILIAG-----GDGKGADFKPLVPVLK--AVSHLITLGKDGDKIAALSDSS 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V   ++M           + GD+V++
Sbjct: 385 IRV---DSMADAVNKAAQLAIAGDIVLL 409


>gi|241664199|ref|YP_002982559.1| UDP-N-acetylmuramate [Ralstonia pickettii 12D]
 gi|240866226|gb|ACS63887.1| UDP-N-acetylmuramate [Ralstonia pickettii 12D]
          Length = 461

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 130/386 (33%), Gaps = 52/386 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+    + +F + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWVLQDAG---YNPGFLVGGVPRNFGLSARLTESNFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + +  +        +  FG    + +++      S+    +V   G+ +  V
Sbjct: 219 VNGREDSLKRVLERG---CWSEVEQFGAEGGSGWKIANL---SDDDSFDVVFNGQPLGRV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N +  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 RWALQGDHNRMNAVAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVNDVTVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQSFHIDLAE 394
           + +  +P +++  I  L      GEGR +AV         LG M +    S         
Sbjct: 330 D-FAHHPTAIRTTIEGLR--RRVGEGRILAVLEPRSNTMKLGVMKQTLPDS--------- 377

Query: 395 VLSLYNISHVWLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              L     ++  G           L  AL P          +  L   + ++   GD V
Sbjct: 378 ---LSGADQIFAYGAANGRDAIGWDLAGALAPLGQRAKAFSDLTALVDAVTAAARPGDHV 434

Query: 448 VVKSSNSCGFY----RLINLLLEEFP 469
           +V  SN  GF     +L++ L E   
Sbjct: 435 LVM-SNG-GFGGVHQKLLDALAERAE 458


>gi|261416751|ref|YP_003250434.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373207|gb|ACX75952.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328181|gb|ADL27382.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 453

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 120/358 (33%), Gaps = 47/358 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                  + +TG++GK +T  M++  L    K  A  G++       L L          
Sbjct: 103 QTQSKATVGVTGTLGKGSTVSMISHILDKCGKANAIGGNFGVP---ALDLLEDETPDRIS 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    L     +T  V P + V+  ++  HL     +EE   AKA +    ++ GT 
Sbjct: 160 ILELSSFQL-----MTLSVSPDVGVVLRVSTEHLDWHKSVEEYRDAKANLVRWQKREGTC 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQG 278
               D      + ++S A   KT Y+   +  A     D  +       + S + +    
Sbjct: 215 VYLKDAEPTAKIASESPA---KTKYAVSLADGASNGDGDAVIDGATLTIDGSTLYL---- 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +    GI  +  +NM         L   V  A +AL  +        R      +  
Sbjct: 268 --ADCKVRGI--YQLENMAAATLACKALGVKVADAFEALKSYETLPF---RMEFKGEKRG 320

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++SY   P +  AA   + +           +LG     G    +   +L+E+L  
Sbjct: 321 IEFYNDSYATRPDATIAATGSMKRPFA-------LILG-----GSEKNADFTELSEILVK 368

Query: 399 Y--NISHVWLSGFHVLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              N+  V L G     +   L +       I      T++  F    +    G V++
Sbjct: 369 QRPNLKRVALIGATAERMLADLKKAGVDEAGIKTAIFPTLEDAFADSLNIGEGGTVIM 426


>gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK49]
          Length = 481

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 165/485 (34%), Gaps = 81/485 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------------VPLTLARMPVDVDFGIFE 166
                 LS      A + + N  +                  + +    +  D    I E
Sbjct: 127 YFAYQILSQ-NHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGK-SME 282
           +N     F+++K +              S   DF          +      +  GK +  
Sbjct: 241 VNSGMDHFQIVKEQV------------VSMEHDFYGAGSSNTIIDSQAFSFEAAGKLAGH 288

Query: 283 VVHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                IG    +N     L  L +     A ++   K ++          R      +  
Sbjct: 289 YDIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAATRVPG----RMEVLTQKNG 340

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +  + Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ 
Sbjct: 341 AKIFVD-YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQ 393

Query: 399 YNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV 449
           +    V L+         LA+ + +   I  +  + +      I+ +L     +GD V++
Sbjct: 394 HPELTVILTADDPNYEDPLAISEEIASYIS-YPVDKIADREEAIKKALSLTDREGDAVIL 452

Query: 450 --KSS 452
             K +
Sbjct: 453 AGKGA 457


>gi|262341149|ref|YP_003284004.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272486|gb|ACY40394.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 456

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 124/357 (34%), Gaps = 42/357 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IAI G+ GKTTT  +L   L S      A +G  + +    + L          + E   
Sbjct: 114 IAIGGTHGKTTTCTLLGHILYSAGISVTAFLGGISENYKSNIILN----GTKIFLVEA-- 167

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       + P+IA +T+    H+  +   E +  A       ++K          
Sbjct: 168 ---DEFDRSFLYLSPNIACVTSFDQDHVDTYPKKETLKKAYIAFLNRIKK---------- 214

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
            + ++   K  +  +K    +   K   +          + + +     ++ + +     
Sbjct: 215 PYKKIFLCKEESFPLKNAIYYSVIKKESYYSNHLSIKGNEWYFDFHTPTETWKSLPLPIP 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+   L I   L  + +   KAL +F   + R   +  +  +    +  + Y  
Sbjct: 275 GIHNLKNVTAALSISDYLKINQEKVRKALFLFQGIKRRYSIHYLSKKK----IYIDDYAH 330

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG-DMCEMGELSQSF---------HIDLAEVLSL 398
           +P  + A I  + +  P+ +     +LG     +   ++ F         H+D+  +L +
Sbjct: 331 HPTEINALIHTVKECFPNKK-----ILGIFQPHLFSRTKFFEESFAKSLEHLDILILLDI 385

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           Y    + + G +   L + +  S       T+  +   I+      D+++   +   
Sbjct: 386 YPARELPMKGINSNNLLEKIKMSSKNKEISTLSKVLEKIKE--KHFDIILTIGAGDI 440


>gi|78183609|ref|YP_376043.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9902]
 gi|109892750|sp|Q3B0X8|MURC_SYNS9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167903|gb|ABB25000.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9902]
          Length = 468

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 140/408 (34%), Gaps = 54/408 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +      + +  +  + ++   D+L AL               IA+ GS GKTTT  ++
Sbjct: 83  AIPDTNPELENARAHQLAIWHRSDLLAALIDQQA---------SIAVAGSHGKTTTSTLI 133

Query: 127 TIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           T  L    +   A IG     +G      +        + E   S    ++F     RP 
Sbjct: 134 TTLLIEAGEDPTAVIGGVVPCLGSNGHSGQG----RLLVAEADESDGSLVKF-----RPS 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +   H  ++ G++++ S       G E+   +  NYDD   +     +     K
Sbjct: 185 LGVITNLELDHTDHYDGLDDLISTLQRFGGGCER---LIANYDDPILQEHFEPTAWWSNK 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
                 +S+N  F     +   ++        G ++ +      G H   N    L    
Sbjct: 242 ------QSENIAFAALPLQLDGDRCTARFYENGSAVGDFTLPMAGLHNLSNATAALAACR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +  ++ L+        G+R+          ++D+ Y  +P+ ++A +++   + 
Sbjct: 296 MEGIPFEALVEGLAQLQAP---GRRFDLRGTWEGRHIVDD-YAHHPSEVRATLTMAQLMV 351

Query: 365 -------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSG 408
                  P    R +AV          +Q F    AE L          +Y      + G
Sbjct: 352 SSGRSPLPSPPQRLVAVF--QPHRFSRTQQFFEAFAEALQNCDALLLAPVYAAGEQTIPG 409

Query: 409 FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
               AL     +L   + +  +E ++ L   ++      D+V+   + 
Sbjct: 410 VCSNALAQRIRSLRPDLEIEVAENLNQLTDLVKQRSRPDDLVLAMGAG 457


>gi|195941036|ref|ZP_03086418.1| putative ligase [Escherichia coli O157:H7 str. EC4024]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 132/398 (33%), Gaps = 37/398 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPYMSGPQWLHDFVLRDRWVVAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    D  F + E            +  V   P  
Sbjct: 124 ILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I L  +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPENDINLKQTLAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KLNADASEWEVLLDGEKVGEVKWGLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVLPADAANALGTFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R +AVL      M  MG         L           V+L       + V  + D
Sbjct: 349 GGTARILAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVAD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           A  +    H+S  +D L   +  +   GD ++V  SN 
Sbjct: 402 ACIQ--PAHWSADVDVLADMVVKAAQPGDHILVM-SNG 436


>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 433

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 141/397 (35%), Gaps = 61/397 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI   + +   +V+   +        +IPV    ++               KA II ITG
Sbjct: 66  FISPGIAQNESIVIWAKEQ-------NIPVISDIELFSRFA----------KAPIIGITG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+T  ++LT  + +     A  G+    +     L  +   +++ + EL    L   
Sbjct: 109 SNGKSTVTQLLTQMIINAGMQVAMGGNIGTPV-----LDCLNEKIEYYVLELSSYQLDYS 163

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-EL 234
             L  +    + V+  I P HL  +   +   ++K  +++  +    + +N D+      
Sbjct: 164 HHLNLI----VGVVLNITPDHLDRYQNFKHYINSKLSLYQHCQH---LVINLDEPLTPPK 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH---GIGYH 291
           + AK   + I              Q   +   +      + L+G ++ +  +    IG H
Sbjct: 217 VNAKCFGISIPK------------QADDFGTVTCHDTYYL-LKGDNVLMSINEVQLIGEH 263

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N+L  L +   +       I  +      +G   R      +      ++S   N  
Sbjct: 264 NTRNILAALALGDQIRLP---IISMIQSIKNFKGLEHRLEWVAKKQNIDYYNDSKATNAI 320

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S   AI  L  +  H     + +LG + +    +  F       L   +I+ V L G   
Sbjct: 321 STITAIQAL--MRKHQN--IVLILGGIAKQENYTPLF------KLINKSITSVILIGQSA 370

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +  +  + +  +++TM        S + +G +++
Sbjct: 371 QQFEQEI--NTNTSHAKTMKDAVNVAHSMINNGTILL 405


>gi|188584358|ref|YP_001927803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium populi BJ001]
 gi|179347856|gb|ACB83268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           populi BJ001]
          Length = 455

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 102/326 (31%), Gaps = 34/326 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  +    L    +     G+    +         P +    + 
Sbjct: 112 PEAPFVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGTAVLS----LAPPAENRVHVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +     LT  + P + ++  + P HL     +E  A+ K  +  G   +    +
Sbjct: 168 ELSSFQID----LTPSLDPSVGILLNLTPDHLDRHGTMENYAAIKERLVAG---SDLAVI 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD++   +  +     I+           D+  R          +  ++ G     + 
Sbjct: 221 GVDDAYCAAIAGRRRGERIRLHVEGHGDAAGDYVCRAGAVRGPDGAVIAEISG-----IQ 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  QN    +     L           +      G   R       G    +++S
Sbjct: 276 SLLGEHNLQNAAAAVAAALRLGLTGAEIA---AGLKSFPGLAHRMEPLRRIGPTLFVNDS 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S + A+     I          V G   E G         LA +     ++H +
Sbjct: 333 KATNADSTEKALLAFRDI-------HWIVGGKAKEGGIEP------LAPLFDR--VAHAY 377

Query: 406 LSGFHVLALKDALPRSIHVHYSETMD 431
           L G    A    L   +     +T++
Sbjct: 378 LIGASSDAFAATLDGRLPFTRCDTLE 403


>gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           CWL029]
 gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
 gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
          Length = 809

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 140/436 (32%), Gaps = 53/436 (12%)

Query: 47  KGPH-YDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           KG   + GHD   + H        VVV +  +A      +        L  L++  + ++
Sbjct: 48  KGARCFSGHDSSHVPH------DAVVVYSSSIAPDNVEYLTAIQRSSRL--LHRAELLSQ 99

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L      I ++GS GKT T  ++       +K      SY         L          
Sbjct: 100 LMEGYESILVSGSHGKTGTSSLIRAIFQEAQKDP----SYAIGGLAANCLNGYSGSSKIF 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + E   S      +      P   VIT I   HL+     ++ +     +    +     
Sbjct: 156 VAEADESDGSLKHYT-----PRAVVITNIDNEHLNNYAGNLDNLVQVIQDFSRKVTDLNK 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +F N D    +         G     S+G S      +  + Q + QS       G+  +
Sbjct: 211 VFYNGDCPILK---------GNVQGISYGYSPECQLHIVSYNQKAWQSHFSFTFLGQEYQ 261

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  +  G H A N     G+      D++   KAL  F     R +R     N     L
Sbjct: 262 DIELNLPGQHNAANAAAACGVALTFGIDINIIRKALKKFSGVHRRLER----KNISESFL 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLY 399
             E Y  +P  +      L  +      RR+  +        L +         +     
Sbjct: 318 FLEDYAHHPVEVA---HTLRSVRDAVGLRRVIAIFQPHRFSRLEECLQTFPKAFQEADEV 374

Query: 400 NISHVWLSGFHVLA------LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++ V+ +G           L + + +S +VH  Y    D +  ++++ +   DV V   
Sbjct: 375 ILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPHGD-IVDYLRNYIRIHDVCV--- 430

Query: 452 SNSCG-FYRLINLLLE 466
           S   G  Y +   L +
Sbjct: 431 SLGAGNIYTIGEALKD 446


>gi|153948046|ref|YP_001402574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
 gi|152959541|gb|ABS47002.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
          Length = 461

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 123/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  I+ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRPLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L    + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVLLDNNVVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAS---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    ++S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAYWSADIDQLVDMIVKTAQPGDHILVM-SNG 436


>gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 516

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 143/469 (30%), Gaps = 61/469 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR I     FF  KG  +    ++  A   GA   V         G        V 
Sbjct: 34  ISYDSRDIQTNTLFFC-KGAGF-RPTYLSMAKDNGATCYVAEQPFPEGKGMH---ALVVR 88

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNN- 145
           DV  A+  L+ A     +    ++A TG+ GKTT+   L      +     A   S N+ 
Sbjct: 89  DVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSSVNDV 148

Query: 146 -----------HIGVPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +  P +L      R  VD       + +S     +     +   +   
Sbjct: 149 VGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFF 208

Query: 190 TTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKT 246
             I P H+         +    K ++   L  +    +N + D F E+  A +      +
Sbjct: 209 LNITPDHIGPNEHPNFADYLHCKLQL---LVNSRKCIINAETDHFPEVYAAATTTTNPDS 265

Query: 247 IYSFGKS--KNADFQL------RKWKQCSEQSWMEV-------QLQGKSMEVVHHGIGYH 291
           IY F +   +N D ++      +  +    ++  ++       +      E     IG  
Sbjct: 266 IYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGDF 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    +    +  A+ +    A          G+            ++D  Y  N A
Sbjct: 326 NEINGTAAIIGAGLGGANHE---HASEGIRHVTISGRMETEKTKNHGLVVVD--YAHNKA 380

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           SM A +  +         + I V+G   + G      F   L+       ++        
Sbjct: 381 SMMALMGFMK--KEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFED 438

Query: 411 VLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KSS 452
            + + + +   I     +       +       S     DVV++  K +
Sbjct: 439 PMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGA 487


>gi|308183597|ref|YP_003927724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
 gi|308065782|gb|ADO07674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
          Length = 447

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 129/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  LIAEKNLAILDSNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +  G   +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDEGLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNIQAFSLTPSISASLCYQQDLRNPNLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLALEEIASLLENFYGVKGRLEIVHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    +  + S Y    +  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGAIASCYAHKIILTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|325128263|gb|EGC51148.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           N1568]
          Length = 458

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 126/375 (33%), Gaps = 42/375 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++ + G+ GKTTT  ML   L          IG    +  V   L + P           
Sbjct: 107 VLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPNSQSPFF 166

Query: 164 IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V  RP   V+  +   H   F+ +  I +    +   +   G
Sbjct: 167 VIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + L+          +  FG         +  +  ++ S  +V L GK+ 
Sbjct: 227 LIICNG---QQQSLQDTLDKGCWTPVEKFGTEHG----WQAGEANADGS-FDVLLDGKTA 278

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L  +     +   + TA +AL  F   +   +R          T
Sbjct: 279 GRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVK---RRMEIKGTANGIT 335

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVL 396
           + D+ +  +P +++  I  L Q    G  R +AVL      M  +G +  +        +
Sbjct: 336 VYDD-FAHHPTAIETTIQGLRQ--RVGGARILAVLEPRSNTMK-LGTMKSAL------PV 385

Query: 397 SLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL     V+    G      +   P    ++  +  D     I  +   GD ++V  SN 
Sbjct: 386 SLKEADQVFCYAGGVDWDVAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVM-SNG 444

Query: 455 CGF----YRLINLLL 465
            GF     +L+  L 
Sbjct: 445 -GFGGIHGKLLEALR 458


>gi|257095677|ref|YP_003169318.1| UDP-N-acetylmuramate [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257048201|gb|ACV37389.1| UDP-N-acetylmuramate [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 452

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 119/366 (32%), Gaps = 32/366 (8%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A R+     ++A+ G+ GKTTT  ML   L     +    IG    + GV   LA   
Sbjct: 94  WLAERVLQGRWVLAVAGTHGKTTTAAMLAWILEHAGLSPGFLIGGVPMNFGVSARLAGKD 153

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            +  F + E            +  V      AV+  +   H   F  +  I +       
Sbjct: 154 AESPFFVIEADEYDTAFCDKRSKFVHYRARTAVLNNLEFDHADIFPDLAAIETQFHHFVR 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L     I  N  ++  E + A+     I+         +AD   R     S+ S   ++
Sbjct: 214 ILPGNALIVANAAEASLENVLARGCWTPIERF------NDADGW-RAEGSDSDGSLELLR 266

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N +  L         +   + ALS F       +R      
Sbjct: 267 GDSVVGTTRWGLAGDHNRSNAVAALLAARHAGVPLARGLAALSRFENVR---RRLELRGV 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G   + D+ +  +P ++ A ++ L      G  R +AVL          +S  + L  +
Sbjct: 324 AGGVQVYDD-FAHHPTAIAATLAGLR--RKVGGARILAVL--------EPRSNTMKLGIM 372

Query: 396 -----LSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 SL +   V+     +    ++   P          +D L   +  +   GD V+
Sbjct: 373 KSMLPASLADADLVFCYAADLGWNVVEALAPLGDKAVVENDLDRLVRRLADTARPGDQVL 432

Query: 449 VKSSNS 454
           V  SN 
Sbjct: 433 VM-SNG 437


>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
 gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
          Length = 456

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 144/383 (37%), Gaps = 31/383 (8%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+  +++   SL IP+       G  +      A   SK+ I+A+TG+ GKTTT  +LT 
Sbjct: 69  VDRIVISPGISLDIPIVKAAQARGIDVVSEVELAYEVSKSPIVAVTGTNGKTTTTTLLTK 128

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    K     G+  + +        MP D  F + EL    L  I+      RP  A+
Sbjct: 129 VLEGSGKPVHVGGNIGDSLSEVAY--SMPAD-GFLVAELSSYQLETIKHF----RPIGAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  I P HL+    +E   +AK  IFE    T  + LN DD     ++ ++ +  +K   
Sbjct: 182 MLNITPDHLARHKTMENYIAAKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQ 241

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                  A +        ++    +  +  + +    H  G H  +N+L  + +   L  
Sbjct: 242 KKAVENGA-YYADGKCYIAKDGVAKFVIADEDI----HIPGSHNIENILTVIALSYALGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            V+T  + +S FH  E R +R +        T  ++S   N  S+  A+    Q      
Sbjct: 297 PVETIHRIISEFHGVEHRLERVKTI---DGITFYNDSKATNVDSVVKALESFDQ------ 347

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
            + I + G   +M  L           L       V   G      + A  ++    ++ 
Sbjct: 348 -QVILLAGGHDKMTPLEDFM------ELVKEKTKAVIFMGEAADRFETAAKKAGVKPIYR 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           + +M             GD+V++
Sbjct: 401 ALSMKDAVEKGYKLAETGDIVLL 423


>gi|308064254|gb|ADO06141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Sat464]
          Length = 447

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 130/397 (32%), Gaps = 57/397 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +      +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYKDAKNSFF---KDESLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVH-HGIGYHMAQNMLM-TLGI 302
              K A   ++ +      S      Q       K + ++H   +G +   N+L   LG+
Sbjct: 214 ALDKKAHLNVQAFSLTPSISASLCYQQDLRNPDLKEIALIHSPLLGRYNLYNILAGVLGV 273

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     L  F+  +GR +            L+   +      M+        
Sbjct: 274 KLLTQLPLEAIAPLLENFYGVKGRLEIVHSK------PLVIVDFAHTIDGMQQVFESFKN 327

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414
                  +  A+ G     G+  ++    + EV S Y    +  S           +  +
Sbjct: 328 Q------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDI 378

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S  V   +      L    +L D +V+++  
Sbjct: 379 LKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|288929761|ref|ZP_06423604.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328862|gb|EFC67450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 443

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 124/364 (34%), Gaps = 30/364 (8%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +D  +G ++++  AAR    A ++ ITGS GKTTT  ++     +        G+    
Sbjct: 82  AIDKGIGIISEIEFAARYT-DAKMVCITGSNGKTTTTSLIYHIFKAAGYNVGLGGNIGRS 140

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
           + + +         ++ + EL    L  +    +  + HIAV+  I P HL  ++  ++ 
Sbjct: 141 LALQV----AEGAHEWYVIELSSFQLENM----YRFKAHIAVLLNITPDHLDRYNYCMQG 192

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AK  I + L          DD   +    K        +  F +++           
Sbjct: 193 YVDAKMRILQNLGPQDYFIYWADDPVVKPELQKYDVSA--RVCPFAENRETGAAAY---V 247

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              Q  +   L+    +      G H   N L             +   + LS F   E 
Sbjct: 248 ADGQITLPAPLEFNMPQARLSLPGKHNLYNSLAAALAARAAGIPQNVVEQGLSDFPGVEH 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +R            I++S   N  + + A+  ++          I ++G     G+  
Sbjct: 308 RMERVATMH---GVNYINDSKATNVDACRYALEAMTA-------PTILIIG-----GKDK 352

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + +  + +++     + V+L   +    ++     + V  + +M             G 
Sbjct: 353 GNDYEPIKDLVKEKCAALVYLGADNTKLHQNFDHLGLPVADTHSMKECLTACAGMAKAGY 412

Query: 446 VVVV 449
            V++
Sbjct: 413 TVLL 416


>gi|85711824|ref|ZP_01042880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Idiomarina baltica OS145]
 gi|85694439|gb|EAQ32381.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Idiomarina baltica OS145]
          Length = 443

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 119/362 (32%), Gaps = 31/362 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  MLT  L +        G     +     ++    + DF I E   
Sbjct: 105 VLAVSGTHGKTTTASMLTWILQANG---YQPGFLIGGVPGNFNVSAALGESDFFIIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P+  VI  +   H   F  + +I    A +   +   G + +  
Sbjct: 162 YDTAFFDKRSKFVHYSPNTLVINNLEFDHADIFDTLADIQKQFAHLLRIVPGNGQVIIP- 220

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + ++          +   GK  +  +        ++ S   ++     + V    
Sbjct: 221 --DQVDAIEQVITKGCWSDVVRVGKDWH--YHA----NSADASLFNLRRDDNEVAVKLPL 272

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N +M +     +      A +AL+ F   +   +R    L      + D+ + 
Sbjct: 273 VGTHNMHNAVMAMIAAFHVGVLPQQAAEALATFKAPK---RRLELLLEYRGIKVFDD-FA 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++K  +  L +      GR + +L        +    H D          S    +
Sbjct: 329 HHPTAIKTTVDALKK---SETGRLVVLLE--PRSNTMKSGVHKDALANALADADSINIFA 383

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINL 463
              +    D      +       + +       LV GD VV+  SN  GF     RL+  
Sbjct: 384 PESIE--WDIASAVPNARVFGDTEAMLQHAIDDLVPGDTVVIM-SNG-GFEGMQNRLVKA 439

Query: 464 LL 465
           L 
Sbjct: 440 LQ 441


>gi|56707593|ref|YP_169489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670064|ref|YP_666621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456664|ref|ZP_03665137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370111|ref|ZP_04986117.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874414|ref|ZP_05247124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|62900472|sp|Q5NHK3|MURD_FRATT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595657|sp|Q14J05|MURD_FRAT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|54113905|gb|AAV29586.1| NT02FT1066 [synthetic construct]
 gi|56604085|emb|CAG45084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320397|emb|CAL08467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568355|gb|EDN34009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840413|gb|EET18849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158751|gb|ADA78142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 416

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 125/353 (35%), Gaps = 53/353 (15%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            +       +KA  IA+TGS GK+T   M    L  +      +G+          L ++
Sbjct: 86  DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP-----ALNKI 140

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D+ + E+    +     L + VR  +  I  ++P HL  +   E+   +K  + + 
Sbjct: 141 GEKFDYCVVEVSSFQI----NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAKF 196

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    +  +                     G     ++Q+ +       + +   +
Sbjct: 197 --SNDFFVYDVHN---------------------GIKYAGEYQIIRGAIYRNSTKLLDIV 233

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + K         G H  +N+++ L I+  L  D++ AI ++  F   +G   R +     
Sbjct: 234 ETK-------LFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF---KGLEHRCKIVKKV 283

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I++S   N  +  AA++ ++          I +LG + + G+ S      + + L
Sbjct: 284 NSTTYINDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFSL-----MIKSL 333

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             Y + +V++ G     ++  +           M   F          ++V++
Sbjct: 334 DKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELSSQKANSNEIVLL 385


>gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK353]
          Length = 481

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 167/484 (34%), Gaps = 79/484 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFKK-EFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++   +        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDV-----DFGIFE 166
                 LS      A + + N  +               L L +M            I E
Sbjct: 127 YFAYQILSQS-HRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIF 224
           +       ++   + +   + V   I+P H+        E+    K  + +    +  + 
Sbjct: 186 VSSQAY--LKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
           +N   + F+++  +  ++       +G   N            +      +  GK +   
Sbjct: 241 VNSGMNHFQIVNEQVASMEHD---FYGTGSNNTI--------IDSQAFSFEAAGKLAGHY 289

Query: 284 VHHGIGYHMAQNM----LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               IG    +N     L  L +     A ++   K ++          R      +   
Sbjct: 290 DIQLIGRFNQENAVAAGLACLRL----GASLEDIKKGIAATRVPG----RMEVLTQKNGA 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Y  N  S+   +SV+ +   H +G+ I +LG     G   +S   D   +L+ +
Sbjct: 342 KIFVD-YAHNGVSLSNLLSVVEE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQH 394

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV- 449
               V L+         LA+ + +   I  +  + +      I+ +L     +GD V++ 
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYIS-YPVDKIADREEAIKKALSLTDREGDAVILA 453

Query: 450 -KSS 452
            K +
Sbjct: 454 GKGA 457


>gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 515

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 132/411 (32%), Gaps = 46/411 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 I+ D+R++         KG  +   +F+    ++G    V   D         +
Sbjct: 38  DVPFTHITYDTRTVREGTLLVC-KG-RF-RPEFLDGLKERGLVAYVSERDFS---DHTEV 91

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACI 140
           P   V+D   AL+ L+ A     +++ T+I ITG+ GKTTT       L++      A  
Sbjct: 92  PGLIVNDARKALSLLSAAFYGMPQNELTVIGITGTKGKTTTAYFTQAILNAYSNGRCALF 151

Query: 141 GSYNNHIGVPLTLA------------RMPVDV-----DFGIFELGMSHLGEIRFLTHLVR 183
            S N  +     LA            RM  +       + + E+        R   H + 
Sbjct: 152 SSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNR--VHGLT 209

Query: 184 PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +     I+P H+S+      E+    K ++           LN D    +L++  + A
Sbjct: 210 FDVGAFLNISPDHISDIEHPTFEDYLYCKRQLAYHARA---FVLNADADHADLIREDAQA 266

Query: 242 LGIK----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
            GI      + +     NA    R     +E S   +   G  + E      G     N 
Sbjct: 267 AGIPLADFALRTDDAPTNATLTAR--PSNAEHSAFSIAANGHDLGEFSLSLAGDFNYANA 324

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +        D+A           G   R          T+    Y  N  S++A 
Sbjct: 325 LAAVALAHEAGVPFDSAAMHAMESVHVPG---RMELFTGTDGDTVAIVDYAHNYTSVRAL 381

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           I  + Q     + R   V G     G  +     ++ E         V+ +
Sbjct: 382 IDFVEQRYCERKPRITLVAGS---AGNKAFDRRQEIVEAAQDRIARFVFTA 429


>gi|159902563|ref|YP_001549907.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159887739|gb|ABX07953.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 476

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 140/425 (32%), Gaps = 59/425 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      +       + VF   D+L  L K         +   I + GS GKTTT  +
Sbjct: 75  SAIFKANPELQEAYRQKLKVFHRSDILAWLIK---------QQPSIVVAGSHGKTTTSTI 125

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +T  L+  K+   A IG             +      F + E   S    ++F       
Sbjct: 126 ITTLLALNKEDPTALIGGVVPFYKSNGHAGKGK----FLVAEADESDGTLVKF-----EG 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I   H   +  +E +     +  +  +K   +  N+D    +    K+     
Sbjct: 177 DIGIITNIELDHTDYYKDLESLKETMEKFSKSCKK---VLANHDCPNLQNKSNKNINW-- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGI 302
              +S    K  DF          ++  +   + ++   E+     G H   N +  +  
Sbjct: 232 ---WSTQTIKGVDFSGIPTSINGNETTADF-YEKETFLGEITVPLPGLHNLSNAVGAIAA 287

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +            +     +   +R+          ++D+ Y  +P+ + A I     
Sbjct: 288 CRLAGLSFSELK---NSLKDIKPPNRRFDFKGQWQGRQIVDD-YAHHPSEINATIETARL 343

Query: 363 IS-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL 412
           +        P    R + V          ++    D A+ L   +I   + ++ +G  ++
Sbjct: 344 MINTKTNWLPKISKRLVVVF--QPHRYTRTKHLIKDFAKSLGKADIVFLAPIYSAGEEMI 401

Query: 413 A----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +          +K   P +I ++ S  M  L   I+ + +  D+++   + +     L  
Sbjct: 402 SDVSINSLFSLIKKEHP-NISIYTSTNMKELESIIKKNTIKDDLILFMGAGNINM--LSK 458

Query: 463 LLLEE 467
            LLE+
Sbjct: 459 KLLEK 463


>gi|261367207|ref|ZP_05980090.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
 gi|282570805|gb|EFB76340.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
          Length = 456

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 107/298 (35%), Gaps = 35/298 (11%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E    H   +          + VI  I   HL  +  + ++  A  + F  L + 
Sbjct: 165 QSAVIEACEYHETFLHLTCA-----VGVILNIDNDHLEYYGTMGQLKLAFQK-FALLSR- 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK 279
            T+  N DD     +         + + SFG +++A F+     +     +  +V   G+
Sbjct: 218 -TVVFNMDDHNTVDVVNSI----DRPVLSFGITEDARFRAVNVAEYKPGFYEFDVLELGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +   +     GYH   N L     V  L    + A++A   FH   G G+R+        
Sbjct: 273 NFAHIRLGVPGYHNIYNALAMCCCVRPLGLKPEDAVRAAEAFH---GTGRRFEIKGECNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D+ Y  +P  ++A +     +      R IAV          ++    D  +VL  
Sbjct: 330 AVIVDD-YAHHPTELEATLKTAKGLGYQ---RVIAV--HQPFTYSRTKMLMDDFVKVLGE 383

Query: 399 YN-ISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            N +  + + G             L   +P S+     + ++G   +++ +   GD+V
Sbjct: 384 ANQVVLLPIMGGREADDGTVSSEQLAAKIPGSV---VVDGLEGAADWVKQNAGKGDLV 438


>gi|332518984|ref|ZP_08395451.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044832|gb|EGI81025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 114/348 (32%), Gaps = 35/348 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +KATI+ ITGS GKTTT  +    LS         G+  +     +    +  +    + 
Sbjct: 102 TKATIVGITGSNGKTTTASLTHHILSQELNV-GLAGNIGDSFAKQI----LEKNYKNYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I       +P+IA+IT I P HL  +    E   ++K  I     K   + 
Sbjct: 157 EISSFQLDGI----IDFKPNIAIITNITPDHLDRYDYKFENYINSKFRIALNQTKEDYLI 212

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            + DD         +        +S  K     A  +    K   +   + +  +  ++E
Sbjct: 213 YDADDEVITNWLKTNTIQSTLLPFSLTKKIENGAYLENENIKITIDNKHIIMPTKNLALE 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +    +  +L     T  ++L  FH  E    R    L       I
Sbjct: 273 ------GKHNVKNAMAASTVSHLLKIRKQTIRESLENFHGVE---HRLEQVLKINKVQYI 323

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+  +   +    G            G    + + +L   ++   + 
Sbjct: 324 NDSKATNVNATYYALESMDAPTVWIVG------------GTDKGNDYTELFPFINE-KVK 370

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
            +   G     L +     + V      M             GD V++
Sbjct: 371 AIICLGIDNEKLLENFGNMVDVIVETQFMSEAVKIAYKIAEAGDNVLL 418


>gi|309811809|ref|ZP_07705583.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
 gi|308434230|gb|EFP58088.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
          Length = 944

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 164/492 (33%), Gaps = 86/492 (17%)

Query: 29  GISID-SRSIAPQEAFFA-----IKGPHYDGHDFILHAVQ------KGAGLVVVNTDMVA 76
           GISID +    P     A     + G    G DFI   +        GA   V       
Sbjct: 411 GISIDRTMDAHPDNVEIAEEAARLIGLDVAGIDFICPDITVPVRETGGAICEVNAAPGFR 470

Query: 77  SIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                ++  P F    V+  L          S+  I+A+TG+ GKTTT  ML   +  + 
Sbjct: 471 MHTHPTVGEPQFIAKPVVDLLFPPGS----PSRVPIVAVTGTNGKTTTSRMLAHIMKGLG 526

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K      +    I   L + R                VDF + E+     G +R      
Sbjct: 527 KKVGMTSTDGIVIDERLLITRDASGPKSAKMVLQNPRVDFAVLEVA--RGGILREGLGYD 584

Query: 183 RPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           R  IAV+T I   HL       +E++A+ K  I E + + G   LN DD +   ++    
Sbjct: 585 RNDIAVVTNIQSDHLGMRGINSLEDLANVKQVIVEAVPRDGFAVLNADDEYVRRMRRVCR 644

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQC-----------SEQSWMEVQLQGKS-------- 280
                TI  F  ++  +  +    ++C           +++  M V  QG+         
Sbjct: 645 G----TIVWFSMEAPGSRVRQFIDERCVRGDRAVVLEPTDKGEMIVLKQGRRSMQLAWTH 700

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +    +G       N L   G      A +    + L  F          R    +   
Sbjct: 701 LLPSTFNGAARMNVANALAAAGAAFAAGAPLHDIRQGLRTFT-TSYYLSPGRLNRIEVDH 759

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEV 395
             +   Y  NPA ++     + +           +RI V+G     G+       ++ E+
Sbjct: 760 AEVFVDYCHNPAGLQLLGEFVDRYVAGKNKSTRVQRIVVVGA---AGDRRDQDIREMGEL 816

Query: 396 LSLYNISHVWL----------SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQS---- 439
            + +   HV +           G     + +   ++I      + +++ +   +++    
Sbjct: 817 AAKW-FDHVIIREDDNLRRRAPGETAALVAEGAQQAIDSGEARAASVETVLDELEATQVA 875

Query: 440 --SLVDGDVVVV 449
             S   GD+VV+
Sbjct: 876 IDSARAGDLVVI 887


>gi|238797574|ref|ZP_04641071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
 gi|238718571|gb|EEQ10390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
          Length = 461

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 123/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI G+ GKTTT  M+   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAIAGTHGKTTTAGMVAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  ++ I      +   +   G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWLARKV--STDASVYEVFLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A + L  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAHWSADIDTLVDMIVKTAQPGDHILVM-SNG 436


>gi|307298498|ref|ZP_07578301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915663|gb|EFN46047.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 128/374 (34%), Gaps = 53/374 (14%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFG 163
           + + T+I +TG+ GK+TT  ML   +S   +     G+          LA +  +V D+ 
Sbjct: 106 KPRGTVIGVTGTNGKSTTVTMLRHIISGKNRKVFQGGNLGYP------LAGVAEEVYDYY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L    F    VR H++ +  +   HL     I++   +K  + +  E  G  
Sbjct: 160 VLEVSSFQLK--WFAEERVRFHLSAVINLGEDHLDYHRSIDDYFKSKLRLAKMTE--GIT 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +    +  +  K       ++   + G+  ++           ++  + V+   +    
Sbjct: 216 VVPK--AVADCQKELLKGSKLRPFVALGEGFDS----------FDREHLRVR-GIEFRTS 262

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N+L+ L I  ++    +   + L  +        R +           D
Sbjct: 263 DLPFTGLHNYENVLVVLLISQLIGLSAEDVFQELKSYTFLS---HRLQLVRELEGVKYYD 319

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  ++ AA+            + I +LG     G      + +L E L      H
Sbjct: 320 DSKATNAHAVSAALRSFE------PSKTILILG-----GREKDETYSELIEQLGQLK--H 366

Query: 404 VWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-------- 452
           V + G  +  L   L  R I V  +  M       +     GD VV+    S        
Sbjct: 367 VVMLGSSMKILSAKLQMRGIPVSGAANMADAVKICRGLAAKGDNVVLSPAGSSYDLYINY 426

Query: 453 --NSCGFYRLINLL 464
                 F  ++  L
Sbjct: 427 SERGNHFREIVTAL 440


>gi|197287210|ref|YP_002153082.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Proteus mirabilis HI4320]
 gi|227357096|ref|ZP_03841466.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
 gi|194684697|emb|CAR46660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Proteus mirabilis
           HI4320]
 gi|227162788|gb|EEI47751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
          Length = 459

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 125/367 (34%), Gaps = 30/367 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEDCGYQPGFLIGGVPGNFQVSAQLGESP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  I      +   +  +G I + 
Sbjct: 161 EYDSAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLTAIQKQFHHLVRIVPGSGKIIMP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D    L +        +  Y+    +  D+Q +K    ++ S   V  +G+ + EV  
Sbjct: 221 DND--LNLKQTIGMGCWSEEEYT---GETGDWQAKKI--SNDSSHFAVFHKGEQVGEVCW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN LM +     +       + A +  +      +R          ++ D+ 
Sbjct: 274 GLSGEHNMQNGLMAIVAAHHVGVLP---VDACAALNKFINARRRLELRGEVNQVSVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++ A +  L      G  R IAVL    E    +    I   ++         V
Sbjct: 330 FAHHPTAILATLEALRS-KVGGTARIIAVL----EPRSNTMKMGISKDDIAPALGRADEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L    ++  L   +         +S  +D L   +      GD +++  SN  GF  + 
Sbjct: 385 FLFQPPNIQWLVSDIAEKCVQPARWSTDIDTLVEMVAKEAKPGDHILIM-SNG-GFGGIH 442

Query: 462 NLLLEEF 468
             LL + 
Sbjct: 443 EKLLAKL 449


>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
           cluster bacterium]
          Length = 434

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 136/396 (34%), Gaps = 58/396 (14%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI   + +   +V+   D        +IPV    ++               KA +I ITG
Sbjct: 66  FISPGIAQTQSIVIWARDK-------NIPVVSDIELFSRF----------VKAPVIGITG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+T  ++L   +++  K  A  G+          L  +   +D+ + EL    L   
Sbjct: 109 SNGKSTVTQLLGDMITNSDKKVAVGGNIGKP-----ALDCLDDQIDYYVLELSSYQLDY- 162

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
              T+ ++    V+  I P HL  +   ++   +K  ++   +    + +N D+      
Sbjct: 163 ---TNQLKLLTGVVLNITPDHLDRYDSFDDYTDSKLSLYRYCQD---LVVNLDEVIVPKK 216

Query: 236 KAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHM 292
               H         FG    K AD            S   ++     M V     IG H 
Sbjct: 217 NNAKH---------FGIDMPKRAD---DFGTVTCHGSCYLIKGDDVVMSVSEMQLIGEHN 264

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             NML  L +   +   V+   +++  F   +G   R      +      ++S   N  S
Sbjct: 265 VANMLAALALGDQIGLSVELMAQSIKNF---KGLEHRLEWVAKKQGVDYYNDSKATNSIS 321

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A+  L  I  H     IA        G +++     +   L   N+  V L G    
Sbjct: 322 TIQALKAL--IDKHENIVLIA--------GGIAKEEDYSVMFKLIDENVFGVVLIGQSAA 371

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               +L R   V Y++TM          L DG +V+
Sbjct: 372 DFGQSLNR-PQVSYAQTMSEAVNLASGMLNDGVIVL 406


>gi|113954195|ref|YP_729267.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9311]
 gi|123132801|sp|Q0IE55|MURC_SYNS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113881546|gb|ABI46504.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. CC9311]
          Length = 483

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 140/386 (36%), Gaps = 45/386 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVP 150
           L   ++  + A L  +   IA+ GS GKTTT  +LT  L+++ +   A IG      G  
Sbjct: 99  LTIWHRSDLLAWLIEQQPSIAVAGSHGKTTTSTVLTTLLATVGEDPTAVIGGVVPCYGSN 158

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                   +    + E   S    ++F   L      +IT +   H  ++  ++++    
Sbjct: 159 G----HKGNGRLLVAEADESDGSLVKFKASL-----GIITNLELDHTDHYRNLDDLIETM 209

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                G ++   + +N+DD   +          +  +      + AD+     +   +++
Sbjct: 210 KTFGRGCKR---LLINHDDPILKEHFQADACWSVHHV------ETADYAALPVQLDGDRT 260

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +   QG+ + ++     G H   N++  L    +    ++  + A++        G+R
Sbjct: 261 IADYFEQGQKVGQITLPLPGLHNLSNVVAALAACRMEGVPLEALLLAVTELRSP---GRR 317

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-------PHGEGRRIAVLGDMCEMG 382
           +          ++D+ Y  +P+ ++A +++   +        P    R +AV        
Sbjct: 318 FDFRGEWQDRQVVDD-YAHHPSEVQATLTMAQLMVQSGRSPLPRTPQRLLAVF--QPHRY 374

Query: 383 ELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALP---RSIHVHYSETM 430
             +Q F    A+ L          +Y      + G +   L  ++     +  V  + TM
Sbjct: 375 SRTQEFLNAFAQALVSADALVLAPIYGAGEQPIEGINSELLARSIRLIDPNQPVFVASTM 434

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + L   ++      D+++   +    
Sbjct: 435 EELAGLVKQHSQPDDLILAMGAGDVN 460


>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS185]
 gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS185]
          Length = 439

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 118/346 (34%), Gaps = 43/346 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             K  +I ITGS GK+T   ++           A  G+          L  +  + D  +
Sbjct: 106 DRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-----ALDLLHENADLFV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH ++  +A    I+  H+  +S I     AK  ++   +++  + 
Sbjct: 161 LELSSFQL----ETTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVL 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            N DD      +  +         SFG  +  AD       +    S   + +       
Sbjct: 214 FNRDDKLTVPPEPMNQN-------SFGLAAPEADEWGISDSKIYHGSSEIMPI------T 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H   N+L  + +V ++  D     K    F    G   R      +   T ++
Sbjct: 261 EVSLIGSHNHANLLAAMALVDVVGVDKQIMAKVARSFT---GLSHRCEVVGIKNGVTYVN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AA+  LS       G  I + G     G+   +    L   ++L  ++H
Sbjct: 318 DSKATNVGATVAALDGLSD----HLGDIILIAG-----GDGKGADFKPLG--VALAKVTH 366

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G     +      ++ V   ETM             GD+V++
Sbjct: 367 LITLGRDGKKIAALKDGAVRV---ETMAAAVTKAAELATSGDIVLL 409


>gi|238918676|ref|YP_002932190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Edwardsiella
           ictaluri 93-146]
 gi|238868244|gb|ACR67955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 438

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 127/349 (36%), Gaps = 42/349 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  I+AITGS GK+T   ++     +        G+          L+ +  +    
Sbjct: 101 REAQVPIVAITGSNGKSTVTTLVGEMACAAGWQVGVGGNIGVP-----ALSLLKHECRLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  +R   A I  ++  H++ +  G+++  +AK  I+E       
Sbjct: 156 VLELSSFQL----ETTASLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYENARA--- 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
             +N DD+    +             SFG        +  +    +Q  + ++++G+ + 
Sbjct: 209 CVVNADDALTMPIHG-----ADTRCVSFGVD------VGDYHLNRQQGEIWLRVRGEKIL 257

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     ++++AL+ F    G   R++  L      
Sbjct: 258 NTKEMQLTGIHNYTNALAALALADAVGLPRASSLRALTTF---RGLAHRFQLVLEHSGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L     H  G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALKGL-----HLNGTLHLLLG-----GDGKDADFTPLLPYLRGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L   L R       +TM+     +      GD+V++
Sbjct: 365 I-RLYCFGRDAGPL--MLLRPEVSRRFDTMEQAMRALAPLTRAGDMVLL 410


>gi|238783538|ref|ZP_04627560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
 gi|238715593|gb|EEQ07583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
          Length = 461

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 123/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI G+ GKTTT  M+T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAIAGTHGKTTTAGMVTWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  ++ I      +   +   G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVFLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A + L  F       +R           + D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINAR---RRLELRGEAHGVMVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    H+S  +D L   I  +   GD ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAHWSADIDTLVDMIVKTAQPGDHILVM-SNG 436


>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
          Length = 458

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 131/381 (34%), Gaps = 61/381 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  ITGS GKTTT  ++   L +        G+  N +   +       + D  + E
Sbjct: 116 PARIFGITGSDGKTTTTTLVYNILMTEGYRTWVGGNIGNPLFASI---EEMKEEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +         + A++T ++P HL     +EE   AK  +F+  E    + LN
Sbjct: 173 LSSFQLMTMEE-----EINCALVTNLSPNHLDIHKDMEEYVDAKKNVFKYQENKDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            D+     L  ++       +  F + +         K  +  +  ++ L GK +  +  
Sbjct: 228 KDNDITNSLTEEAKG----RVMKFSRKEE-------IKDGAYLNGDKLVLLGKEICTLGD 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L    +VS   A +++  K  + F    G   R             ++
Sbjct: 277 IKLKGMHNVENLLAAFCLVSE-DASIESMAKVATTFT---GVQHRCEFVKEIDGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNIS 402
           S  ++P    A +    +         I + G            HI    +       I 
Sbjct: 333 SIASSPTRTIAGLRAFEK-------PVILIAGGY--------DKHIPFEPLAEEGYDKIK 377

Query: 403 HVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
            + L+G     +KDA  +       SI ++  E  +      +    +GD+V +    +S
Sbjct: 378 ALVLTGLTKDKIKDAFDKVMKDRGISIPIYMEEGFNEAIYRAKDIAKEGDIVTLSPACAS 437

Query: 453 ---------NSCGFYRLINLL 464
                        F  ++N L
Sbjct: 438 FDMFPNFEIRGNRFKEIVNKL 458


>gi|299147132|ref|ZP_07040199.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
 gi|298515017|gb|EFI38899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
          Length = 444

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGKSLALQV----AEDYH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTP 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG 278
                   DD       AK         ++  K   A   +   +   +E     ++   
Sbjct: 207 DDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 264 ---QEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVE---HRLEKVARVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 318 IDFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L +   R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGEAVLL 417


>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
 gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
          Length = 444

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 122/352 (34%), Gaps = 32/352 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A ++ ITGS GKTTT  ++     S        G+  N + + +         
Sbjct: 95  FAGRYTNAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGNSLALQV----ATEQH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ + EL    L  +    +  R +IAV+  I P HL  +   +++   AK  I +    
Sbjct: 151 DYYVIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTS 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   +    K         ++  K   A   +   +    +    +    +
Sbjct: 207 EDAFIFWNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVEDGEVEINEP---IAFNME 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+  H  G H   N L      ++     +   KALS F   E    R          
Sbjct: 264 QEELALH--GTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVE---HRLEKVATVRGV 318

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           + I++S   N  S   A+  +        G+ + +LG     G+   + + ++ +++   
Sbjct: 319 SFINDSKATNVNSCWYALQSM-------TGKTVLILG-----GKDKGNDYTEIEDLVREK 366

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             + V+L G H   L     R  + V   +T M             G+ V++
Sbjct: 367 CSALVYL-GLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLL 417


>gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
 gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
          Length = 517

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 145/430 (33%), Gaps = 49/430 (11%)

Query: 7   FHDLLQ----AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++     +  H I        + I+ D+R + P   F   KG  +   +++    +
Sbjct: 18  LREIIRGDVWTLDPHDIKGF-DEPFSAITYDTRKVEPGT-FLCCKG-RFKA-EYLQGIDE 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +G    V   D      +   P   VDDV  A+  L+     R + +  ++ ITG+ GKT
Sbjct: 74  RGLAAYVSENDFS---DATQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGTKGKT 130

Query: 121 TTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDV-----DF 162
           TT  +    L+       A   S +N +     +             RM  +      ++
Sbjct: 131 TTAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEY 190

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKT 220
            + E+        R     +   +A    I+P H+S       E+    K +I +     
Sbjct: 191 LVMEVSSQAYKVDR--VFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCRA- 247

Query: 221 GTIFLNYDDSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             + L  D +  +L++  + HA    T ++ G    AD          + S   + + G 
Sbjct: 248 --LVLGADCARADLIRQDARHASVPVTTFALGGDSTADVMAA--PANDDHSRFSIVIDGA 303

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQ 336
           S+ E+     G     N    + I      D     A  AL    P    G+       +
Sbjct: 304 SIGELSLTLDGDFNYANTAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTR 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I + Y  N AS+ A +  + Q     +     + G     G  +     ++    
Sbjct: 364 SNTIAIVD-YAHNYASVTALLDYVDQRYGSEKPEITLITGS---AGNKAYDRRAEIV-HA 418

Query: 397 SLYNISHVWL 406
           +   I H+ L
Sbjct: 419 AQDRIDHLVL 428


>gi|91791720|ref|YP_561371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
 gi|91713722|gb|ABE53648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
          Length = 440

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 146/451 (32%), Gaps = 65/451 (14%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG---AGL 67
           L A     +  +    +  + +DSR   P        G      +F    +  G      
Sbjct: 12  LGATGLSVVRYLVSQGIKPLVMDSRRNPP--------GADVLAQEFADIELITGGFDCRY 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALN---------KLAVAARLRSKATIIAITGSVG 118
           +V    +V S G          +V  A++         +L   A    K  +I ITGS G
Sbjct: 64  LVQAQQLVISPGIA----IDTPEVRAAMDMGIEVIGDVELFARAIADKKPCVIGITGSNG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT   ++   L +     A  G+        L L  M  DVD+ + EL    L      
Sbjct: 120 KTTVTTLVYEMLLAAGLKVAVGGNIGTP---ALDLLAM--DVDYYVLELSSFQL----ET 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T+ +    A    I+  H+  +S +    +AK  +++    +  I  N DD         
Sbjct: 171 TYSLNCIAATCLNISEDHMDRYSDLTAYRNAKLRLYDQ---SRFIMYNLDDEL-----TY 222

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H    +  +  G      + L   K     S +   +           IG H   N+L 
Sbjct: 223 PHEPMNQNHFGLGVPDGDAWGLGDGKIYHGDSDIINLID-------VALIGSHNHGNLLA 275

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +V     + +  +     F    G   R      +   + I++S   N  +  AA+ 
Sbjct: 276 AMALVHACGVEKEPMVTVAKTFS---GLSHRCELVAVKQGVSYINDSKATNVGATVAALE 332

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            LS       G    + G     G+   +    L + LS  N+  +   G     L    
Sbjct: 333 GLST----HLGEVYLIAG-----GDGKGADFRPLTQALS--NVVQLITLGRDGHKLAKLK 381

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           P +I V    TM             GD+V++
Sbjct: 382 PGAIEV---ATMAEAVAKAAEMAYSGDIVLL 409


>gi|163854031|ref|YP_001642074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium extorquens PA1]
 gi|163665636|gb|ABY33003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 99/316 (31%), Gaps = 29/316 (9%)

Query: 59  HAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            A+    G+ + + +   ++G      IPV G  ++          A L   A  +AITG
Sbjct: 67  SALVLAPGVPLTHPEPHWTVGLARQAGIPVIGDIEIF-----CRERAALAPDAPFVAITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  +    L    +     G+    I         P      + EL    +   
Sbjct: 122 TNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILS----LEPPAATRVHVVELSSFQID-- 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  ++P + ++  + P HL     +E  A  K  +  G        +  DD +   +
Sbjct: 176 --LTPSLKPGVGILLNLTPDHLDRHGTMENYAVIKERLVAG---ADLAVIGVDDPYCAAI 230

Query: 236 KAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +     I+  I   G +           +  + + +        +  +   +G H  Q
Sbjct: 231 AERRTGERIRLHIEGHGDAAGDYVGANGTVRGPDGAVI------AEVSGIQALLGDHNLQ 284

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    +     L           +      G   R       G    +++S   N  S +
Sbjct: 285 NAAAAVAAAIRLGLTSTEIA---AGLKSFPGLAHRMEPLRRIGPTLFVNDSKATNADSTE 341

Query: 355 AAISVLSQISPHGEGR 370
            A+     I     G+
Sbjct: 342 KALLAFRDIHWIVGGK 357


>gi|84394436|ref|ZP_00993152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus 12B01]
 gi|84374935|gb|EAP91866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus 12B01]
          Length = 438

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 45/346 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +        G+        L      +D D  + E
Sbjct: 107 DKPVVAITGSNGKSTVTDLTGVLAKAAGLNVGVGGNIGIPALDLL-----ELDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+ +   AK  IF   +      +N
Sbjct: 162 LSSFQL----ETTSSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFNNAQ---YAIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS---EQSWMEVQLQGKSMEV 283
            +D        +++      + +FG     +F +          + S   +  Q      
Sbjct: 215 RED-------KETYPDYSMPLVTFGLDDQ-EFGVATIDGTEWLVDNSKPVLPTQD----- 261

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L++L ++  +  D   +++A        G   R +   ++     ++
Sbjct: 262 -LTLVGRHNVANALVSLALLKQVGIDYSKSLEA---LKAYNGLTHRCQVVADKRSIKWVN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N AS  AA+S L       +G    ++G + +  + S     +L  VLS      
Sbjct: 318 DSKATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELEPVLSQLERVQ 367

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   G         +P        +TM  +   +   LV GD+V++
Sbjct: 368 LCCFGEDA---AQFMPLHPSAKTFDTMRDIIESVSKQLVAGDMVML 410


>gi|304411645|ref|ZP_07393257.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|307306303|ref|ZP_07586048.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
 gi|304349833|gb|EFM14239.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|306911176|gb|EFN41603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
          Length = 439

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 151/448 (33%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       +F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGAETLATSFPDVKLISGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                +   T  V +   + I V G  +    L    +A R   K  +I ITGS GK+T 
Sbjct: 71  IISPGIATYTPEVRAAVDMGIEVIGDVE----LFAREIADR---KPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++           A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMAREAGIAVAVGGNIGVP-----ALDLLHENADLFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  +A    I+  H+  +S I     AK  ++   +++  +  N DD      +  +   
Sbjct: 175 KCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFNRDDKLTVPPEPMNQN- 230

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  +  AD       +    S   + +           IG H   N+L  + 
Sbjct: 231 ------SFGLAAPEADEWGISDSKIYHGSSEIMPI------TEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V  +  D     K    F    G   R      +   T +++S   N  +  AA+  LS
Sbjct: 279 LVDAVGVDKQVMAKVARSFT---GLSHRCEVVGIKNGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G     G+   +    L   ++L  ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + V   +TM             GD+V++
Sbjct: 385 VKV---DTMAAAVTKAAELATSGDIVLL 409


>gi|309775628|ref|ZP_07670628.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916722|gb|EFP62462.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 434

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 118/384 (30%), Gaps = 48/384 (12%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D +          +L  + T +++ G+ GKTTT  ML+  +S    T   IG        
Sbjct: 83  DSVKTYWYHEFLGKLAKEYTSVSVAGTHGKTTTTGMLSHVMSLAAPTGYLIGDG------ 136

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 MP D  + + E        + +      P  A+IT I   H+  +  +E+  +A
Sbjct: 137 ---TGEMPKDSRYFVLESCEYQRHFLAYT-----PEYAIITNIELDHVDYYKDMEDYCNA 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                  ++K   + L  DD+   LL  K+  L       +G   + D Q    +Q    
Sbjct: 189 FETFANQIQKG--VVLFGDDAAVRLLHVKTPHL------YYGLQDDNDVQAVHIQQNENG 240

Query: 270 SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +V    +         +G  +  N L  + +  +       A           G  +
Sbjct: 241 MQFDVLYHKELFGHFELPFVGKPLLWNSLGVIAVGIMEGLS---AQLLQEGLQSFPGVKR 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+    N     +  + Y  +P ++K  I           G+++  L        +   F
Sbjct: 298 RFTIEENGDNVYI--DDYAHHPTAVKYMIEA---ARIKYPGKKVIALFKPDRYSRIYY-F 351

Query: 389 HIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
               A+ L       V+L           G  +  + D   +          +     + 
Sbjct: 352 MDRFAQELDQ--ADEVYLCHFPENAAKEEGIDI-TIYDLADKCKKAEVINEDEAAAKLLA 408

Query: 439 SSLVDGDVVVVKSSNSC-GFYRLI 461
                  V +  SS        ++
Sbjct: 409 QRGPA--VYLFMSSKDIYKLKNIV 430


>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 445

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 118/349 (33%), Gaps = 36/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + ATI+ ITGS GKTTT  +    L          G+  +     +       ++D  + 
Sbjct: 101 TDATIVGITGSNGKTTTTMLTGFILEQAGINLGVAGNIGDSYAKMV----AQKEIDTYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  + P HL  +    E   ++K  I    ++T  + 
Sbjct: 157 EISSFQLDGIADFA----PHIAVVLNVTPDHLDRYDYKFENYIASKFRIAMNQKETDYLI 212

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD        K         +S  K       ++        + + VQL   +  + 
Sbjct: 213 YDADDPVSVDWLKKHPVKSKLLPFSLDKEFENGAFIKD-------NNLTVQLNNNTFTMA 265

Query: 285 HHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            + +   G H  +N +    + ++L     T  ++L  F   E    R    L       
Sbjct: 266 TNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVE---HRLEQVLKINNVQY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +   A+  +S+ +    G            G    + + DL  +++   +
Sbjct: 323 INDSKATNVNATFYALDSMSEPTVWIVG------------GVDKGNNYRDLYPLVNE-KV 369

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L       + +   + +M             GD V++
Sbjct: 370 KAIICLGVDNAKLMSHFGNMVDIIVETPSMSEAVKIAYKVSERGDNVLL 418


>gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 373

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 109/361 (30%), Gaps = 53/361 (14%)

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELG 168
           M+   L +  +    IG+  N +                +   LA M    VD  + E+ 
Sbjct: 1   MVEGGLRAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVS 60

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLN 226
              L   R      R  +   T ++  HL     + +   AKA +F  +   +  T  + 
Sbjct: 61  SHALALGR--VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVC 118

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVV 284
            DD           A     I      + A ++             +  +   G    + 
Sbjct: 119 IDD----DAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIG 174

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +   N L+ L I+  +    + A+            G+  +    QGF  L+D 
Sbjct: 175 IRLPGRYNVANCLVALAILDTVGVSPEQAVPG---LREIRVPGRLEQIDRGQGFLALVD- 230

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++++ ++ L+        RR+AV+      G+        +  + +      V
Sbjct: 231 -YAHKPEALRSVLTTLA-----HPDRRLAVV--FGAGGDRDPGKRAPMGRIAAQL-ADLV 281

Query: 405 WLSGFHVLA----------LKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--K 450
            ++  +             L  A          E  D         +    GDVV++  K
Sbjct: 282 VVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGK 341

Query: 451 S 451
            
Sbjct: 342 G 342


>gi|223041554|ref|ZP_03611755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor 202]
 gi|223017649|gb|EEF16059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor 202]
          Length = 434

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 125/348 (35%), Gaps = 46/348 (13%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITG+ GK+T   + T             G+          L+ +  D +  
Sbjct: 102 REAKAPIIAITGANGKSTVTTLTTEMAKQAGIKVGMGGNIGVP-----ALSLLKGDYELY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A I  I+  H+    + +EE  +AK  I++  E    
Sbjct: 157 VLELSSFQL----ETTYSLKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAEN--- 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +N +D              ++ +  F + +NA++  +     +             + 
Sbjct: 210 IIVNGEDPLT------YPTQAVEKLIRFAE-QNAEYSKKNDTLYA--------YDDAVIG 254

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +    I G H   N L  + +        +  +KA        G   R++          
Sbjct: 255 IKQMLIRGRHNEMNALAAMALAEAAGIPREGIVKA---LQTYGGLPHRFQAVATNDCVRW 311

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 312 VNDSKATNVGSTVAALNGL-----EVAGTLYLLLG-----GDGKAADFSELIPLVNKANI 361

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+ V    TM      I+  L  GD+V++
Sbjct: 362 -VCYCFGQDGEQLAKLSTQSVLV---ATMQEAVEQIRPQLKTGDMVLL 405


>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
 gi|81174947|sp|Q47VQ7|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
          Length = 471

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 117/349 (33%), Gaps = 32/349 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-----GVPLTLARMPVDV 160
           S   ++A+TGS GK+T   +L     +I    A  G+    I        +  +++    
Sbjct: 118 SPMKMLAVTGSNGKSTVVSLLASLAKAIGVNAALAGNIGEPILNLLHRENVYNSQLANQP 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  I EL    L  +  +  +     A +  ++  HL     +    + K  I+    + 
Sbjct: 178 DIVIVELSSFQLETLSSMHAIA----ASVLNLSDDHLDRHKTLANYQAIKQSIY---PQA 230

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               ++ +D     L A       + I SFG +K         +    +  M    Q   
Sbjct: 231 KIAVVSREDQASNTLVAA------QEIISFGLNKPEQ-DCFGLQAIDNKMVMMFGEQALI 283

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N +  L +       +    + L+ F     R +R      + +  
Sbjct: 284 SIDELPLAGMHNALNYMAALALGYSAGWSLSAMTENLAGFMGLAHRCQRVAS---EDYIQ 340

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  +  AAI+ L         + I + G   +  + S          +   +
Sbjct: 341 WINDSKATNVGATLAAITGLVPTLTGQN-KLILIAGGDGKGADFSA------LTTILNCD 393

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ +   G     +   +  +I V   +T+       +     GD+V++
Sbjct: 394 VNQLITLGKDGAEIASLVSDAIQV---DTLREAVEQAKQIAKPGDMVLL 439


>gi|261840170|gb|ACX99935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 52]
          Length = 447

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 128/398 (32%), Gaps = 59/398 (14%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F  +  L  L+   +      K  I+ ITG+ GKTTT  ++   L  + K  A +G+   
Sbjct: 45  FIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 146 HIGVPL---------TLARMPVDVDFGI------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            I             TL  +  D++  +      F + +S    ++     +   + ++T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     IE    AK   F   +      +N D++        +H        ++
Sbjct: 165 NITSDHLDFHESIENYRDAKNSFF---KDESLKVINRDETNALFNPINAH--------TY 213

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--------HGIGYHMAQNMLM-TLG 301
              K A   ++ +      S   +  Q    +             +G +   N+L   LG
Sbjct: 214 ALDKKAHLNVQAFSLTPFIS-ASLCYQQDLRDPNLKEIALIHSPLLGRYNLYNILAGVLG 272

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    ++T    L  F+  +GR +            L+   +      M+       
Sbjct: 273 VKLLTQLPLETIAPLLENFYGVKGRLEILHSK------PLVIVDFAHTIDGMQQVFESFK 326

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLA 413
                   +  A+ G     G+  ++    + EV S Y    +  S           +  
Sbjct: 327 NQ------KITALFGA---GGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKD 377

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +   +  S  V   +      L    +L D +V+++  
Sbjct: 378 ILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLILG 415


>gi|157147793|ref|YP_001455112.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
 gi|157084998|gb|ABV14676.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 140/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    +  F + E            +  V   P  
Sbjct: 112 ILEACG---YQPGFVIGGVPGNFDVSARLGESHFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I     D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIFPEHDINLKQTIAMGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+   EV    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLNADASVWEVWLDGEKAGEVKWSLVGEHNMNNGLMAIAAARH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVMPADAANALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRS-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R +AVL      M  MG         L           V+L       + V  + D
Sbjct: 337 GGTARILAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVAD 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A +
Sbjct: 390 ACVQ--PAHWSGDVDALADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEAAE 445


>gi|34499800|ref|NP_904015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Chromobacterium violaceum ATCC 12472]
 gi|62900566|sp|Q7NPZ7|MURD_CHRVO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34105650|gb|AAQ62004.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chromobacterium
           violaceum ATCC 12472]
          Length = 453

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 120/346 (34%), Gaps = 40/346 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFE 166
            +IAITGS GK+T   ++     +        G+    +   L LAR       D  + E
Sbjct: 111 KVIAITGSNGKSTVTSLVGHLCEAAGLDTVVAGNIGLAVLEAL-LAREQSGKRPDVWVLE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A +  I+  HL  ++ + + A AK  +F G    G   LN
Sbjct: 170 LSSFQL----ESTFSLAADAATVLNISEDHLDRYADLLDYAHAKTRVFNG---KGVQVLN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            DD+    +    H      +  F  +  AD+ L      +      +++ G+ +     
Sbjct: 223 KDDALVRAMVRPGH-----PVKWFSLNGAADYAL------ARNGGYWLKVDGEKVFDCAD 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H A N L  LG+   +   ++  +  L  F    G   R            ID+
Sbjct: 272 MQLQGLHNAANALAALGLCQGIGLPLEKLLDGLKTF---RGLAHRVELVDEFDGIAFIDD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + +AA++           + + + G   +  + +        +         V
Sbjct: 329 SKGTNVGATEAALN-------GMTRQVVLIAGGDGKGQDFAP------LKPACQRIARAV 375

Query: 405 WLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     ++ AL  S       +T++       +    GDVV++
Sbjct: 376 LLIGRDAGRIEAALEDSGLALERCDTLEEATRRAAALARPGDVVLL 421


>gi|33592809|ref|NP_880453.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|33572457|emb|CAE42026.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|332382222|gb|AEE67069.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 133/397 (33%), Gaps = 54/397 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----- 147
            A+     A R   +  ++A+ G+ GKTTT  +    L           S   ++     
Sbjct: 455 EAIISHMFAERDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRI 514

Query: 148 -----GVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AH--L 197
                  P +  R+    DVD  + E   +  G +R      R ++A++T I    H  L
Sbjct: 515 DTGDCSGPRSARRLLLHPDVDAAVLE--TARGGVLREGLAFDRCNVAIVTNIGMGDHFGL 572

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + ++  G   LN  D     + +        +I  F + +N  
Sbjct: 573 GYISTVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPG----SITYFAEDRNHP 628

Query: 256 --ADFQLRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSI 305
             A  + +  +         V  QG          + +   G      +N +  L     
Sbjct: 629 VMATHRAQGHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWA 688

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D DT   AL++F              +    TLI + Y  NP +++A +  +  +  
Sbjct: 689 LGIDWDTIRHALAIFVNDAQTAPGRFNVFDFRGATLIAD-YGHNPDAIQALVRAIDTMPA 747

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALK 415
               R + + G     G+          E+L       V L           G  V  L+
Sbjct: 748 R--RRSVVISG----AGDRRDEDLRQQTEILGGA-FDDVILYQDQCQRGRADGEVVALLR 800

Query: 416 DALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
             L ++    + + + G           L  GD+ ++
Sbjct: 801 QGLQQAPRTRHIDEIQGEFVAIDAALERLAPGDLCLI 837


>gi|323496076|ref|ZP_08101136.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
 gi|323318820|gb|EGA71771.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
          Length = 455

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 143/410 (34%), Gaps = 33/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A++G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNLRYTSGPQWLQEFLLHDRWVLAVSGTHGKTTTSSMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G    + GV   L     +  F + E            +  V   P 
Sbjct: 124 ILEDCGYQPGFLVGGVLGNFGVSARLG----ESMFFVVEADEYDSAFFDKRSKFVHYHPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +E I      +   +   G I         E   +     G  
Sbjct: 180 TLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILA----PKHEAAISDVLERGCW 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
           +   F   + +++Q    K  ++ S  +V  Q K++ VV    +G H   N LM +    
Sbjct: 236 SETEFS-GEQSEWQAE--KLSADGSQFKVYFQAKAVGVVNWDLVGDHNVNNALMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    D A  +L+ F   +   +R          T+ D+ +  +P +++  +  L   +
Sbjct: 293 HVGVTPDLACDSLAKFISTK---RRLELKGEVHGVTVYDD-FAHHPTAIELTLDGLR--N 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIH 423
             G+ R +AVL        + +  H +     SL     V+L     +    + +     
Sbjct: 347 KVGQNRILAVLE--PRSATMKRGVHKE-TLAASLDAADAVFLYQPDAIDWSVEEVAHQCR 403

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
              + S  +D L   I      GD ++V  SN  GF     +L++ L ++
Sbjct: 404 QPAYSSSQIDELVSMIIDQAKPGDQILVM-SNG-GFEGIHGKLLDKLADK 451


>gi|261342895|ref|ZP_05970753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288314798|gb|EFC53736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 459

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 144/418 (34%), Gaps = 42/418 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPFMSGPQWLHDFVLRDRWVVAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    D  F + E            +  V   P  
Sbjct: 124 ILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIEADEYDCAFFDKRSKFVHYCPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I L  +D   +   A       + 
Sbjct: 181 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPENDINLKQTMAMGCWSEQEL 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K+ ++ S  +V L G+ + EV    +G H   N LM +     
Sbjct: 241 V-----GEQGHWQAK--KRNADASEWDVLLDGEKVGEVKWGLVGEHNMHNGLMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A KAL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 294 VGVVPADAAKALGTFINAR---RRLELRGEAHGVTVYDD-FAHHPTAILATLAALRG-KV 348

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R +AVL      M  MG         L           V+L       + V  + D
Sbjct: 349 GGTARILAVLEPRSNTMK-MGICKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVAD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPA 470
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A
Sbjct: 402 ACIQ--PAHWSADVDVLADMVVKAAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAEA 455


>gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 122

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGK 119
           A   +V+     S      P+  V D L AL+ +A          A +IA+TGSVGK
Sbjct: 64  AVAAIVSEGKYKSF-----PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGK 115


>gi|167768724|ref|ZP_02440777.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
 gi|167669122|gb|EDS13252.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
          Length = 489

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 85/258 (32%), Gaps = 24/258 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             I ITGS GKTTT  ++   L    +     G+    +     + R   D DF + EL 
Sbjct: 144 RTIGITGSDGKTTTTTLIAEILKEGGRRAHIGGNIGRPLMP---ILRDIRDNDFAVAELS 200

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P IAV+T I+P HL     ++E   AK  I           L  D
Sbjct: 201 SFQLISMRE-----SPDIAVVTNISPNHLDVHGNMQEYIDAKRNIVLHQNAFSRTVLGVD 255

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--- 285
           +       A         ++ F   +     +R         ++   + G+  +++H   
Sbjct: 256 NELAASFAADVRG----RLFEFSVRRP----VRTGAFLGGDGFLYASVNGERSKIIHKNE 307

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L  +  V     DV+        F   E    R      +      ++
Sbjct: 308 LRLPGMHNIQNYLAAVCAVWG-AVDVEAIRNVAMEFGGVE---HRIEFVREKDGVRWYND 363

Query: 345 SYNANPASMKAAISVLSQ 362
           S    P    A +    Q
Sbjct: 364 SIATTPTRTIAGLDSFGQ 381


>gi|299065670|emb|CBJ36843.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CMR15]
          Length = 449

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 128/379 (33%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L         +             AR+    DF + E
Sbjct: 90  QKWVLAVAGTHGKTTTTSMLAWILQDAGYDPGFLVGGVPRNFGQS--ARLTAS-DFFVIE 146

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 147 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLL 206

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + + A+      +    FG    A + +       +    +V L G+    V
Sbjct: 207 VNGREDSLKRVLARGCWSEAE---FFGAEDGAGWAIANL---GDDDSFDVMLDGQVQGRV 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 261 RWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGITVYD 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 318 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 367

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 368 GADQVFAYGAAGGRDAIGWDLAGALAPLGERAQAFSDLTALVEAVTAAARPGDHVLVM-S 426

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 427 NG-GFGGVHQKLLDALGER 444


>gi|255536589|ref|YP_003096960.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342785|gb|ACU08898.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 461

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 120/374 (32%), Gaps = 46/374 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  V   +      IA+ G+ GKTTT  ++       +  +    ++   I       
Sbjct: 98  LKRAQVLGMITHDTNSIAVAGTHGKTTTSSLVAHLCREAELPF---SAFLGGIAENFKSN 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D  + E       E       + P  A+IT+I   HL  +     I     +  
Sbjct: 155 FLFNGDDISVVEA-----DEYDRSFLQLSPDWAIITSIDADHLDIYGDTATIEKGFRDFA 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E + +   +F+            +      +   ++  ++ ADF     ++  ++   + 
Sbjct: 210 ELVPEDTQLFV------------RKGIDIGRPARTYAANEKADFYSDNIRETGDKILFDF 257

Query: 275 QLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             + G          G H  +N    + ++        T  + +S F   + R  ++  +
Sbjct: 258 HDESGDIYLFEWEIPGIHNVENATAAIALLHTFGVSYKTLQRGISGFKGIKRRYTKHSFS 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +    +  + Y  +P  + A I  L    P    +++ V+     +   ++ F    A
Sbjct: 318 TGK----IYIDDYAHHPTELNAVIGSLKTFYPD---KKLLVVFQ-PHLFSRTRDFADGFA 369

Query: 394 EVLSLYNISHVWL------------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           + L   +   + L             G     L + +           ++  F  I+   
Sbjct: 370 DSLEKAD-DLILLDIYPARELQKNYEGVTSQWLSEKIKTENKE--VAALEDAFAKIKE-- 424

Query: 442 VDGDVVVVKSSNSC 455
            + D+++   + + 
Sbjct: 425 KNFDILLTVGAGNI 438


>gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum EA 2018]
          Length = 462

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 125/381 (32%), Gaps = 57/381 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  +TGS GKTTT  ++   L          G+    +   +        V   + E
Sbjct: 117 PAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGTPLFSKIKEVSTKDKV---VLE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I      V P +AV+T ++P HL     +EE  +AK  IF    K   + +N
Sbjct: 174 LSSFQLMTID-----VSPEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKGNVLIIN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+     +++++    +K    F +++         KQ       E ++  K       
Sbjct: 229 RDNEITNNMESEALGDLLK----FSRNEKVKNGAYYNKQDGNIYLFENKICNKD---DIK 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N +     VS      ++ IK    F   E    R             ++S 
Sbjct: 282 IKGMDNVENFMAAFCAVSK-DVSKESMIKVAMNFAGVE---HRREFVRELDGVKYYNDSI 337

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--- 403
            ++P    + ++         E   I + G            HI   E L+         
Sbjct: 338 ASSPTRTISGLNA-------YERPVILIAGGY--------DKHIPF-EPLAEKGYDKIKV 381

Query: 404 VWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
           + L G     +K+   +        + +  S+ ++      +    +GD+V +    +S 
Sbjct: 382 LILMGATKNKIKETFDKVICEKNIKLPIILSDNLEEAVCEAKKVATNGDIVTLSPACASF 441

Query: 453 --------NSCGFYRLINLLL 465
                       F  ++N L 
Sbjct: 442 DSFPNFEVRGNKFKEIVNNLK 462


>gi|167614196|gb|ABZ89700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 441

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 129/344 (37%), Gaps = 41/344 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            II+ITG+ GK+T   M+              G+    I     L  +   VDF I EL 
Sbjct: 107 PIISITGTNGKSTVATMVEKIAKKSGYKVCLGGNIGVPI-----LNMLNQKVDFYILELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L      T  ++  IAV+  I+  H++ +  G ++    K  +++  E      +N 
Sbjct: 162 SFQLEN----TFTLKSKIAVVLNISEDHINRYPEGFKQYKKIKLSLYQRAE---ICIVNV 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   ++++        K   +FG ++N+D+Q+           + +  + K +  +   
Sbjct: 215 KNKLHDVIQTN----KSKKYITFG-TQNSDYQV-----HYNHKNVILSRKNKKILDISQT 264

Query: 288 I--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H  QN L+ L I   +       I  L  F        R +    +     I++S
Sbjct: 265 LLWGAHNHQNALVALAISDSIKCPRHCIITTLQKFSSLP---HRLQIIHRKKGIDWINDS 321

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            + N  S K A++ L     +  G    +LG        S +F+I L +    + I  ++
Sbjct: 322 KSTNVNSTKVALNSL-----NTSGTIRLLLGG----DSKSANFNI-LKDDFEKFKI-KIY 370

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     +     +     Y +T+      I    + GD V++
Sbjct: 371 CFGKDGKNISQICKKKS--IYFDTLQQAMKLIIKEAISGDTVLL 412


>gi|33597711|ref|NP_885354.1| cyanphycin synthetase [Bordetella parapertussis 12822]
 gi|33574139|emb|CAE38469.1| cyanphycin synthetase [Bordetella parapertussis]
          Length = 857

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 133/397 (33%), Gaps = 54/397 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----- 147
            A+     A R   +  ++A+ G+ GKTTT  +    L           S   ++     
Sbjct: 455 EAIISHMFAERDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRI 514

Query: 148 -----GVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                  P +  R+    DVD  + E   +  G +R      R ++A++T I    HL  
Sbjct: 515 DTGDCSGPRSARRLLLHPDVDAAVLE--TARGGVLREGLAFDRCNVAIVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + ++  G   LN  D     + +        +I  F + +N  
Sbjct: 573 GYISTVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPG----SITYFAEDRNHP 628

Query: 256 --ADFQLRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSI 305
             A  + +  +         V  QG          + +   G      +N +  L     
Sbjct: 629 VMATHRAQGHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWA 688

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D DT   AL++F              +    TLI + Y  NP +++A +  +  +  
Sbjct: 689 LGIDWDTIRHALAIFVNDAQTAPGRFNVFDFRGATLIAD-YGHNPDAIQALVRAIDTMPA 747

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALK 415
               R + + G     G+          E+L       V L           G  V  L+
Sbjct: 748 R--RRSVVISG----AGDRRDEDLRQQTEILGGA-FDDVILYQDQCQRGRADGEVVALLR 800

Query: 416 DALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
             L ++    + + + G           L  GD+ ++
Sbjct: 801 QGLQQAPRTRHIDEIQGEFVAIDAALQRLAPGDLCLI 837


>gi|121535920|ref|ZP_01667716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
 gi|121305491|gb|EAX46437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
          Length = 449

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 118/357 (33%), Gaps = 31/357 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++ VA RL   A IIAITG+ GKTTT  ++   L +  +     G+    +   +   
Sbjct: 94  MSEIEVAYRL-CPAPIIAITGTNGKTTTTTLVGEMLKAAGREVVVGGNIGLALSQEV--- 149

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +    + E+    L          RP IA +  + P HL     ++   + K  IF
Sbjct: 150 AGISEHGIVVAEISSFQLEG----VVDFRPRIAAVLNLTPDHLDRHRSLDNYKAMKERIF 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                   + LNYDD     +  ++ +  +        S  A  +      C E    E 
Sbjct: 206 RNQRPDDYLVLNYDDPLVRDMAERAPSQAVFFSRKARLSTGARLEDETIVMCWEG-KTEA 264

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               K M+      G H  +N L    +  +  AD       L  F   E    R     
Sbjct: 265 ICPVKEMK----LFGAHNIENALAASCVAFLAGADAGAIGAVLRTFMGVE---HRIEPVA 317

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   NP S   A+          +G  I + G     G   ++   +  E
Sbjct: 318 EIRGVRYYNDSKATNPESAIKALEAF-------DGHIILIAG-----GRDKKTDLTEFME 365

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+   + H+ L G        A       ++H  +  +              VV++
Sbjct: 366 -LAKQKVDHLILLGEAKERFYQAAAAHGVTNIHLVDKFEDAVTLAYRLARPPQVVLL 421


>gi|332531947|ref|ZP_08407831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038574|gb|EGI75017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 444

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 119/344 (34%), Gaps = 39/344 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +    L       A  G+          L  +  D D  + E
Sbjct: 110 TKPVVAVTGSNGKSTVVTLAYEVLKEAGYKVALGGNIGT-----AVLDLLNDDFDVYVLE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++P  A +  ++  HL  +   +    +K  I++G E    I +N
Sbjct: 165 LSSFQLD----TTTSLKPVSATVLNVSEDHLDRYDSYQAYIDSKLSIYDGAE---LIVVN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     ++      G   + SFG ++  D+ L    Q + ++   ++           
Sbjct: 218 ADD-----IQTHPVERGTTPLISFG-AQQGDYHL---AQHNGETHFMLKGDAFLPVDTLA 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + ++S           AL  F    G   R +           ++S 
Sbjct: 269 VVGKHNYLNTLAVMALLSPFEVSKAQYKNALGQF---NGLAHRCQFVAELNGVKYFNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AAI  L+          I + G   +  +L+        +     ++  +  
Sbjct: 326 ATNVGATIAAIDSLAS----DGENLIVIAGGDAKGADLNA------LKPYIEQHVKALIC 375

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVV 449
            G     L     +S   + +  M+     + + L   G++V++
Sbjct: 376 FGKDASDLAAITNKS---YLTNNMEEAVA-LANVLSSTGNIVLL 415


>gi|296110605|ref|YP_003620986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832136|gb|ADG40017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
          Length = 448

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 121/346 (34%), Gaps = 37/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +IA+TGS GKTTT  ++   L S  +     G+    +   +       D +  + 
Sbjct: 108 FNGRLIAVTGSNGKTTTTSLIRDMLESDGQQVTTAGNIGTPVSEVVENLT---DEETLLL 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T  +RP IA+IT I   HL      +    AK +I +      T+ L
Sbjct: 165 ELSSFQLLG----TPDIRPDIALITNIFANHLDYHGSRDNYVEAKFQITKNQTVDQTLVL 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N +    +    +++A     +  F + K+++F +      +  S M        +    
Sbjct: 221 NAEGKDTQNFITRTNA----KVVEFSR-KSSEFMVT----VNADSLMIANHPVMPLT-AI 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N++    +  +         + L  F        R +  L+       ++S
Sbjct: 271 KLVGPHNLENIVAATTVAKLAGVHDSAIRQVLETFGGVA---HRLQFVLSANQIKFYNDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHV 404
              +  + + A++   Q +          L    + G+       DL  ++ +L ++  V
Sbjct: 328 KATDIEATQTALNSFDQPT--------IWLAGGLDRGD-------DLTRLVPNLTHVKVV 372

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     + + A   +  V     +             GD+V++
Sbjct: 373 IAFGETQQKIVEVARAANKPVITVTDVTQAVPVAVKLAEAGDIVLL 418


>gi|33602560|ref|NP_890120.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576999|emb|CAE34079.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
          Length = 857

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 131/397 (32%), Gaps = 54/397 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----- 147
            A+     A R   +  ++A+ G+ GKTTT  +    L           S   ++     
Sbjct: 455 EAIISHMFAERDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRI 514

Query: 148 -----GVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                  P +  R+    DVD  + E   +  G +R      R ++A++T I    HL  
Sbjct: 515 DTGDCSGPRSARRLLLHPDVDAAVLE--TARGGVLREGLAFDRCNVAIVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              S +E++A  K  I + ++  G   LN  D     + +        +I  F + +N  
Sbjct: 573 GYISTVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPG----SITYFAEDRNHP 628

Query: 258 FQLRKWKQC------------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  Q             + Q   EV      + +   G      +N +  L     
Sbjct: 629 VMATHRAQGHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWA 688

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D DT   AL++F              +    TLI + Y  NP +++A +  +  +  
Sbjct: 689 LGIDWDTIRHALAIFVNDAQTAPGRFNVFDFRGATLIAD-YGHNPDAIQALVRAIDTMPA 747

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALK 415
               R + + G     G+          E+L       V L           G  V  L+
Sbjct: 748 R--RRSVVISG----AGDRRDEDLRQQTEILGGA-FDDVILYQDQCQRGRADGEVVALLR 800

Query: 416 DALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
             L ++    + + + G           L  GD+ ++
Sbjct: 801 QGLQQAPRTRHIDEIQGEFVAIDAALQRLAPGDLCLI 837


>gi|332292534|ref|YP_004431143.1| UDP-N-acetylmuramate/alanine ligase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170620|gb|AEE19875.1| UDP-N-acetylmuramate/alanine ligase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 450

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 130/370 (35%), Gaps = 49/370 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  +L   L++      A IG   N+    L    +    D  + E   
Sbjct: 116 LAVAGTHGKTTTSSILGHLLAASGAPVTAFIGGITNNYNGNL----IQKGSDVVVVEADE 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                ++     +RP I  +T++   HL  +    ++ +   E      +      N   
Sbjct: 172 FDRSFLQ-----LRPDILCVTSMDADHLDIYEDEADLIATFQEFGALAPENKRFVKNG-- 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI 288
                       L   T+   G  ++AD+  ++ +  +     ++   G  +E       
Sbjct: 225 ----------LPLAGNTV---GIEEDADYTAQRVRIENGAYVFDLHYPGGVLENLQFSLP 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N +  LG+     +  +  ++AL+ +       +R+   + +    +ID+ Y  
Sbjct: 272 GRHNLFNAVAALGMALSYGSPKEELVEALASYSGVN---RRFTYRIQKEDMVIIDD-YAH 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLY 399
           +P  + A    + ++ P      +A+      +   ++ F  D A          +L +Y
Sbjct: 328 HPTEIAAVHQSVREMYPEES--VLAIF--QPHLFSRTKDFMNDFAVALSHFDEVALLDIY 383

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY- 458
                 ++G     L   +  S      +    L   ++ +  +  +VV+  +   G   
Sbjct: 384 PAREEPIAGITSEVLLSEMTLSRKQIIQKN--ELTDLVKDT--NHKIVVMMGAGDIGVEI 439

Query: 459 -RLINLLLEE 467
            ++   L  E
Sbjct: 440 LKVTKELRGE 449


>gi|328675939|gb|AEB28614.1| Cyanophycin synthase [Francisella cf. novicida 3523]
          Length = 940

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 131/389 (33%), Gaps = 61/389 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMV 552

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAE 212
                V+  I E   +  G +R        ++     ++  HL       +E++A  K+ 
Sbjct: 553 LKDPSVEMAILE--TARGGLLRSGLGYDYCNVGACLNVSADHLGLKGINTLEDLAKVKSI 610

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E         LN DD     + AK  A   K I+    +       +  +   +   +
Sbjct: 611 VVEA--AKDVAVLNADDPNVLKMSAKVTA---KHIFYVTMNPEHALVKQHIRAGGKACII 665

Query: 273 EVQLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIK 315
           E  + G  + +  + I                   H  QN +  + I   +   +D    
Sbjct: 666 EKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRD 725

Query: 316 ALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L  F     +   R        F  L+D  Y  NPA++K    ++  ++    G++I V
Sbjct: 726 GLRTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMI--MNMEFAGKKICV 781

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPRSI-- 422
           L      G+      ++LA+  + Y   +                    LK+AL  +   
Sbjct: 782 LASP---GDRRDEDIVELAKTAAPY-YDYFICKRDDDTRGRAPDEVPRILKEALIEAGIS 837

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++   E+         +   +GD+VV+
Sbjct: 838 IDNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|299131927|ref|ZP_07025122.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
 gi|298592064|gb|EFI52264.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
          Length = 465

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 93/273 (34%), Gaps = 22/273 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +AITG+ GK+TT  +    +          G+    I         P     
Sbjct: 109 RHAPSAPFVAITGTNGKSTTTALTAHLMRQAGFDVQMGGNIGTAILS----LEPPAARRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P + ++  +   H+     IE  A  K  +  G+++ GT
Sbjct: 165 HVIEMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGSIENYAEVKERLVVGVQRGGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWMEVQLQ 277
             +  DD F     A++  L  K + +    +  D  +        +  +  +   V L+
Sbjct: 221 AIVGVDDDFSAK-AARNAELAGKHVVTVSVQRRLDNGVFLEGETIVRGAAGGTAKLVDLR 279

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G     +    G H AQN          L    D   + L  F    G   R      +G
Sbjct: 280 G-----IGSLRGRHNAQNAACAASAALALGVPFDVVQRGLRSF---PGLAHRMEQVGRKG 331

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +++S   N  +   A+S  S I     G+
Sbjct: 332 EVLFVNDSKGTNADAAGRALSSFSDIYWIAGGK 364


>gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
 gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
          Length = 415

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 116/354 (32%), Gaps = 42/354 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L +A R   K  +IAITG+ GK+TT  +  + L          G+    IG P +   
Sbjct: 73  GELELAYRF-FKGKVIAITGTDGKSTTTRLTYLILKKFFDEVFEAGN----IGKPFSEVV 127

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +       + E+       ++      RP+I    + +  HL     IE+   +K  IFE
Sbjct: 128 LENPEGIAVLEVSSFQGKTLKTF----RPNIGAFISFSVDHLDWHPSIEDYLKSKYRIFE 183

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +   + LN  D  +E+   K+ +   K ++S     +     +  +  +        
Sbjct: 184 NQTEEDFLILN--DLVYEI--KKTPSRARKVLFSELYINSDSVFYKDIRLFN-------- 231

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N  +   I   L    +   + +  F    G   R     N
Sbjct: 232 ------PKNLKIRGLHNVYNASVASLIALTLGLKPEDFEEVIYEF---RGLPHRLEFLGN 282

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + ++S +  P ++  A+          +   I ++G      +    F+      
Sbjct: 283 FNGVEVYNDSKSTTPHALMHALKTF------PDNSVILIVGG----KDKGADFYS--LRH 330

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +      G     +KD+      V    T++      +     G+VV+ 
Sbjct: 331 IVQKKVKIALAIGETKEKIKDSWKDITEVKTCNTLEEAVKLAREVSKLGNVVLF 384


>gi|300690405|ref|YP_003751400.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           PSI07]
 gi|299077465|emb|CBJ50090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           PSI07]
          Length = 461

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 129/379 (34%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+      DF + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWILQDAGYD---PGFLVGGVPRNFGLSARLTASDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N  +   + + A+      +    FG    A + +       +    +V L G+    V
Sbjct: 219 VNGREESLKRVLARGCWSEAE---FFGAEDGAGWAIADL---GDDDSFDVVLDGQVQGRV 272

Query: 285 H-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           H    G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 HWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGVTVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 330 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 379

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 380 GADQVFAYGAAGGRDAIGWDLAGALAPLGERAQAFSDLGTLVEAVTAAARPGDHVLVM-S 438

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 439 NG-GFGGVHQKLLDALGER 456


>gi|300703024|ref|YP_003744626.1| UDP-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Ralstonia solanacearum
           CFBP2957]
 gi|299070687|emb|CBJ41982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CFBP2957]
          Length = 471

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 127/379 (33%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+      DF + E
Sbjct: 112 QKWVLAVAGTHGKTTTTSMLAWILQDAGYE---PGFLVGGVPRNFGLSARLTASDFFVIE 168

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 169 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRVL 228

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + + A+        +  FG      + +       +    +V L G+    V
Sbjct: 229 VNGREESLKRVLARG---CWSEVELFGAEDGTGWAIANL---GDDDSFDVVLDGQVQGRV 282

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 283 RWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGVTVYD 339

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 340 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 389

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 390 GADQVFAYGAASGRDALGWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLVM-S 448

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 449 NG-GFGGVHQKLLDALGER 466


>gi|33151489|ref|NP_872842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           ducreyi 35000HP]
 gi|60390541|sp|Q7VP56|MURD_HAEDU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33147709|gb|AAP95231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           ducreyi 35000HP]
          Length = 435

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 121/346 (34%), Gaps = 41/346 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA IIAITGS GK+T   +++             G+          L+ +    +  
Sbjct: 103 REAKAPIIAITGSNGKSTVTTLVSEMAQQAGIKVGMGGNIGIP-----ALSLLNKGYELF 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ ++   A I  ++  H+  ++  E    AK  I+E  E    +
Sbjct: 158 VLELSSFQL----ETTYSLKAKAATILNVSQDHMDRYASGEHYRQAKLRIYENAE---YV 210

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD     L ++S    +  +  F +  +A + ++  + CS    +           
Sbjct: 211 IVNDDDPLTYPLPSQS----VGNLRHFAEH-DAQYAIKYDQLCSGDQAV-------INTD 258

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +      +    I          G   R++          ++
Sbjct: 259 QMLLTGRHNQLNALAAIALAEAAGINRTGIING---LRCYGGLAHRFQRVPTNDGVCWVN 315

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  AA++ L        G    +LG   +  + S      + + L       
Sbjct: 316 DSKATNVGSTVAALNGL-----PLSGTLYLLLGGDGKGADFS------MLKALVNQPHIV 364

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  G    +L +    S+ V   +TM      I+  +  GD+V++
Sbjct: 365 CYCFGKDGKSLAELTTNSVLV---DTMQQAIEQIRPLVKQGDMVLL 407


>gi|167627720|ref|YP_001678220.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668292|ref|ZP_04755870.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876824|ref|ZP_05249534.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597721|gb|ABZ87719.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842845|gb|EET21259.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 940

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 126/387 (32%), Gaps = 57/387 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF- 165
           +  I AITG+ GKTTT  M+     +  K      +   +I   LT+A            
Sbjct: 493 RIPIAAITGTNGKTTTSRMVAHMWKNAGKIVGLTTTDGVYINGKLTVAGDTTGPTSAQMV 552

Query: 166 ------ELGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIF 214
                 E+ +   +  G +R        ++     ++  HL       +E++A  K+ + 
Sbjct: 553 LKDPSVEMAILETARGGLLRSGMGYDYCNVGACLNVSSDHLGLKGINTLEDLAKVKSIVP 612

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +         LN DD     + AK  A   K I     +       +  +   +   +E 
Sbjct: 613 QA--AKDVAVLNADDPNVLKMSAKVTA---KHILYVTMNPEHALVKQHIRAGGKACIIEK 667

Query: 275 QLQGKSMEVVHHGIG-----------------YHMAQNMLMTLGIVSILTADVDTAIKAL 317
            + G  + +  + +                   H  QN +  + I   +   +D     L
Sbjct: 668 GVNGDMITIFDNNVHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDLRDGL 727

Query: 318 SVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             F     +   R        F  L+D  Y  NPA++K    ++  +     G++I VL 
Sbjct: 728 RTFVTSFYQAPGRMNWFEEHPFKVLMD--YGHNPAAIKLVSQMIDNM--EFSGKKICVLA 783

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----------VLALKDALPRSI---- 422
                G+       ++A+  + Y   +    G               LK+ L  +     
Sbjct: 784 SP---GDRRDQDVYEIAKTAAPY-YDYFICKGDDDTRGRADGEIPRMLKEGLIEAGVDAS 839

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   ++         S   DGD+VV+
Sbjct: 840 RIETIQSEQKAVDHALSMAQDGDLVVI 866


>gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
 gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
          Length = 462

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 138/406 (33%), Gaps = 41/406 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            F    + +GA LVV +         L+       +V+G +       R    A  +A+T
Sbjct: 57  RFGEPELPEGASLVVTSPGWRPDHPLLAAAAAAGIEVIGEVELAWRL-RGDGAAPWLALT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTT   MLT  L++       +G+    I   +   R P DV     EL    L  
Sbjct: 116 GTNGKTTAVRMLTSMLTAAGLKALAVGNVGVPIVEAV---REPYDV--LAVELSSFQL-- 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
               +  + P  A +  +AP H+     +EE A+AKA+IF       T+  N DD     
Sbjct: 169 --HWSSGIAPLAAAVLNVAPDHIDWHGSLEEYAAAKAKIFRNAP---TVIYNADDERCAR 223

Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYH 291
           L     A G + + ++ G  +     + +          + +   + +  +     +  H
Sbjct: 224 LAEPYRAAGRRVVGFTLGAPRPGQLGVVEDLLVDRAFVPDPRHTAEELATLADVRPLAPH 283

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L    +            + L+ F P      R       G    +D+S   NP 
Sbjct: 284 NVANALAAAALARAHGVPTGAVRRGLAEFVPDP---HRIAHVARIGDVDYVDDSKATNPH 340

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  A++S    +     G+           G          A  L       V L G   
Sbjct: 341 AAAASLSAFRSVVWIAGGQLK---------GADVDDLVRQAAGRLR-----GVVLLGADR 386

Query: 412 LALKDALPR-SIHVHYSE-------TMDGLFLFIQSSLVDGDVVVV 449
             +++AL R + H+   E        MD +          GD V++
Sbjct: 387 ARIREALERHAPHIPVVEVPGQDTGVMDRVVTEAAKLAAPGDTVLL 432


>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443038|gb|EDP20043.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
          Length = 467

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 138/376 (36%), Gaps = 49/376 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +++    +  +     G+    +   L +       D  + EL  
Sbjct: 121 IVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAAL---LPMLPEVSPEDVAVVELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     ++    P+IAV+T + P HL +   ++E  +AK  I    ++     L Y++
Sbjct: 178 FQL-----ISMHASPNIAVVTNVTPNHLDHHKDMQEYINAKRNILLYQKQPCRAVLGYEN 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGI 288
                ++A      +           A  +      C +E   +   L  K +++     
Sbjct: 233 EISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCMAEDGVVTPFLAQKDVKLR---- 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+L     V      V+   +  S F   E R +  R           ++S   
Sbjct: 289 GLHNIENLLAAAAAVWG-EVPVEAIRQVGSTFTGVEHRIEPVRTL---DGVLYYNDSIGT 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P    A +          + + I + G     G      +  LA  + + ++ ++ L G
Sbjct: 345 SPTRTIAGLRSF-------DRKVILIAG-----GYDKHIPYEPLAPEI-IAHVKNLVLMG 391

Query: 409 FHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFY-- 458
                ++ A+         ++ + +++ M       +++   GD++++  +S S   Y  
Sbjct: 392 ATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIILSPASASFDLYPN 451

Query: 459 ---------RLINLLL 465
                    +++N L 
Sbjct: 452 FEVRGREFKKIVNALK 467


>gi|78221631|ref|YP_383378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
 gi|122063247|sp|Q39YM1|MURD_GEOMG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78192886|gb|ABB30653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
          Length = 452

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 137/401 (34%), Gaps = 43/401 (10%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D HD    A    A +VVV+  +      L             + ++ +A+R      ++
Sbjct: 59  DRHD---EADFAAADVVVVSPGVPQESPYL---QAARRAGREVITEIELASRF-VTVPMV 111

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GKTTT  +     S+        G+  N +   + L      V+  + E+    
Sbjct: 112 AITGTNGKTTTTTLTGEIFSACGFRTFVGGNIGNPL---IELVEGGETVERVVVEISSFQ 168

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L  I       RP +AV+  I   HL  ++  +E   AK  IFE  E T    LN DD  
Sbjct: 169 LEWIS----SFRPRVAVLLNITEDHLDRYATFQEYIDAKVRIFENQESTDYAVLNVDDPI 224

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV---VHHGI 288
              +  +  A    T++   + +                 +  + QG+            
Sbjct: 225 VAGIAGRVAA----TVFPMSQQRE-----LAEGVFHRDGVITFRHQGREERFPTARFRIT 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N++ +L    +L  D   A+ A+  F    G   R             ++S   
Sbjct: 276 GVHNIENIMASLAATLLLGCDAKQALAAVEGFG---GLPHRMELVRELAGVRYYEDSKAT 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S++ A++  + I+    G+         + G  +          L    + H+ L G
Sbjct: 333 NVGSVEKALASFNDITLIAGGK--------DKGGSYAP------LAPLVTERVRHMVLIG 378

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +   L        + T++       S    G VV+ 
Sbjct: 379 EAKERMARELGSLTDTRMATTLEEAVELAASLTEPGGVVLF 419


>gi|326564735|gb|EGE14948.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 12P80B1]
          Length = 460

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 122/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  +    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPANTPSLETTLDKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V+ A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLTPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L   LK+A+  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N   F     RL++ L
Sbjct: 443 NG-DFENIHGRLLDAL 457


>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
 gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
          Length = 454

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 106/334 (31%), Gaps = 43/334 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    + +  +     G+    +      A         + EL    L     LT  ++ 
Sbjct: 128 LTGEIMKATGRQTVVGGNIGFGLSE---TAEDLPSSAVVVAELSSFQL----ELTSSLKA 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVI  + P HL     +E    AK  IF   +K     LNYDDS    + +       
Sbjct: 181 KSAVILNLTPDHLDRHHTMEAYGEAKKRIFLNQDKNDYAILNYDDSAVRAMASDLSG--- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EVVHHGIGYHMAQNMLMTL 300
            T+                   +    + ++++GK      E   H  G H  QN L   
Sbjct: 238 -TVLYISVHGEVPVGA-----FAADGNLYIRMEGKDTCLCKETDLHLFGKHNIQNCLAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +     A +D   + L+ F   E R +  R   +       ++S   N  + + A+   
Sbjct: 292 LLTYCAGASIDVIRRVLTEFRGVEHRLEWVR---DVKGVPYYNDSKGTNTDASEKALEAF 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLALK 415
           S       G  I + G   +M +L+          L+   +  + L G         A K
Sbjct: 349 S-------GHLILIAGGHDKMTDLTSFM------KLAARKVDTLILVGEAADRFEAEARK 395

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +     V +  +M+        +   G  V++
Sbjct: 396 AGMKDIRRVGF--SMEKAVRTAYETAEKGQTVLL 427


>gi|194334384|ref|YP_002016244.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
 gi|194312202|gb|ACF46597.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 14/196 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IA+I  I   H   F+ IE+I  +       +   G +  N  D+    + +K+   
Sbjct: 189 RPDIAIINNIEFDHADIFNSIEDIKRSFRHFVNLVPSEGLLLCNGHDAVALDIASKAFC- 247

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMT 299
               +  FG  K+ D+  R  +   E++  E+   Q+   ++E      G H   N L  
Sbjct: 248 ---RVERFGLDKSCDWSARNIEANGERTAFELLHNQIPVGNLE--IPLFGTHNILNTLAA 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G  S     +    +AL  F   +G  +R     +      + + +  +P ++KA +  
Sbjct: 303 IGSASQADIQLPVIAEALRHF---KGPKRRMEVIGDFPGNITLIDDFAHHPTAIKATLDA 359

Query: 360 LSQISPHGEGRRIAVL 375
           L Q  P    R IA  
Sbjct: 360 LRQRFPS--RRIIACF 373


>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 108/350 (30%), Gaps = 38/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + + I+ ITGS GKTTT  +               G+                +  + + 
Sbjct: 100 TDSLIVGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSFAE----LVATKNPPYYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  I P HL  +    E    +K  I     +   + 
Sbjct: 156 EISSFQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYIDSKFRIAMNQTENDYLI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCSEQSWMEVQLQGKS 280
            + DD       + +H +  K +  F   K     A  +  K     E    E+ ++  S
Sbjct: 212 YDADDEVITQWLS-THTIKSK-LIPFSIEKELPQGAFLKDNKIYIMLENQTTEIDVEEIS 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N +       ++                 +G   R          T
Sbjct: 270 LR------GKHNIKNTMAASVAARLVNI---RNNSLRESLKGFKGAPHRLEEVKVVDGVT 320

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S+  A+  +        G            G+   + +  L   +    
Sbjct: 321 YVNDSKATNVNSVFYALDTIKTPIVWIVG------------GQDKGNDYNSLLPYVHE-K 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  +   G     +  +   +I     + +MD      QS   +GD V++
Sbjct: 368 VRAIVCLGVDNTPIIQSFYNTIDTLVETRSMDEAVKLAQSFAQEGDTVLL 417


>gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
 gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
          Length = 556

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/482 (16%), Positives = 151/482 (31%), Gaps = 59/482 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V G+++ ++ +   + F A+ G    G  F   AV  GA  ++ +    A + 
Sbjct: 48  GAESATEVTGVTLRAQEVRSGDLFAALPGSTTHGARFAADAVAAGATAILTDPAGRAELS 107

Query: 80  SLSIPVFGV-----DDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            +  P   V      +    L  ++         +  +I ITG+ GKTTT  M+  AL +
Sbjct: 108 RVLPPEASVVALVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTSYMVEAALLA 167

Query: 133 IKKTYACIGSYNNHIGV---PLTLAR-------------MPVDVDFGIFELGMSHLGEIR 176
              +   IG+    I     P +L               +   VD  + E+    L   R
Sbjct: 168 AGSSVGLIGTVETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEVSSHALALGR 227

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFEL 234
                    +   T ++  HL     +     AKA++F        +   +  DD +   
Sbjct: 228 --VDGSHFALGAFTNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVICVDDEWGAR 285

Query: 235 LKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
           +   +     +      T+ + G    A +   +    ++ +    +       E+V   
Sbjct: 286 MAELARPAARQSARQPVTVSTGGV--PAQWHAAESVVDADGTSRTPITGTDGDAELVVPL 343

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G +   N L+ + +      D   A  A+         G+  R    Q F  L+D  Y 
Sbjct: 344 PGRYNVANALLAVAVADCAGVD---AATAIGAIATVSVPGRLQRVDRGQPFLALVD--YA 398

Query: 348 ANPASMKAAI--SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL------- 398
             P +++A +        +    GR   V+G   +     +    + A   +        
Sbjct: 399 HKPGAVQAVLATLRAQAAARAEAGRVAIVIGAGGDRDTAKRPLMGEAAARGAEFVVVTDD 458

Query: 399 -------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
                    I    L+G   +   D    +  V                   GD V++  
Sbjct: 459 NPRTEDPAAIRAEVLAGARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGDTVLIAG 518

Query: 450 KS 451
           K 
Sbjct: 519 KG 520


>gi|145588855|ref|YP_001155452.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047261|gb|ABP33888.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 856

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 139/387 (35%), Gaps = 55/387 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-------- 155
              +  ++A+TG+ GKTTT  +++  L+         G+   +I                
Sbjct: 466 EDGRIPVVAVTGTNGKTTTVRLISHLLTETGLRVGMTGTDGVYINHRAIDTGDCSGPKSA 525

Query: 156 ----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIAS 208
               M  DVD  + E   +  G +R      R  +AV+T I    HL     + +E++A 
Sbjct: 526 RNVLMHPDVDAAVLE--TARGGLLREGLGFDRCEVAVVTNIGEGDHLGLNYITSVEDLAI 583

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----QLRK-- 262
            K  I + +  TG   LN  D     +  K        +  F ++++       + +   
Sbjct: 584 LKRVIVQNVAPTGAAVLNAADPMVAKMGDKCSG----RVIFFAQNQHHPVITAHRAKNKK 639

Query: 263 -------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                  +   S+ S +  +     + +  +G+     +N +  +G    L  D +   +
Sbjct: 640 VIYNDGTYIVASKGSRVMYRFPVSEIPLTQNGVLGFQVENAMAAIGAAWALGLDAEKIAR 699

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+ F                   T+I + Y  NP +M+A  S ++ + P      + + 
Sbjct: 700 GLNSFESTANSVPGRFNQFQHNGATVIAD-YGHNPDAMRALASAITAMKPKQS--HVVIS 756

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVH 425
           G     G+       DL  +L      ++ L           G  +  L++ L  +    
Sbjct: 757 G----AGDRRDEDIRDLTRILGNS-FDNIILYQDACQRGREDGEVLKLLQEGLVGATKAK 811

Query: 426 YSETMDGLFLFIQSSLVD---GDVVVV 449
             + + G FL I ++L D   GD+ ++
Sbjct: 812 QVKEIHGEFLAIDTALNDISAGDICLI 838


>gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 511

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/501 (15%), Positives = 162/501 (32%), Gaps = 77/501 (15%)

Query: 6   TFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  ++L  ++ H + +             ++ +S+ ++    FF           ++  A
Sbjct: 5   TVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFCKGNFRE---AYLADA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            Q+GA   V          +++IP   V ++  +++ L+ A     ++    IA TG+ G
Sbjct: 62  QQRGASGYVSEKQYH----NVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLPTIAYTGTKG 117

Query: 119 KTTTKEMLTIALSSIK-KTYACIGSYNN------------HIGVPLTL---ARMPVDVD- 161
           KTT+       L  +  +  A   + N              +  P +L     M   V  
Sbjct: 118 KTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQN 177

Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEG 216
                I E+      + R   + +R  + V   I+P H+         +    K ++   
Sbjct: 178 NMTHLIMEVSSQAYKKQR--VYNLRYDVGVFLNISPDHIGRNEHPTFADYLHCKEQL--- 232

Query: 217 LEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNA-------DFQLRKWKQCSE 268
           L  +    +N D D   ++          + I+ + +  +        DF+ +       
Sbjct: 233 LVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLS 292

Query: 269 QSWMEV-------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           ++ + +       +  G          G +   N +      +++ A        LS   
Sbjct: 293 ENKIRLISVSDKAKQLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGLSH-T 351

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR + Y    +      I   Y  N  S+ + +  L + SP  +G  I + G     
Sbjct: 352 TVPGRMEIYSTKQHG----TIYVDYAHNYGSLHSVLDFLKKQSP--DGNVIVITGS---T 402

Query: 382 GELSQSFHIDLAEVLSL-YNISHVWLSG---FHVLALKDAL-----PRSIHVHYSETMDG 432
           G+        L + ++   N++++            + D +     P  +   Y      
Sbjct: 403 GDKGIDRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTS 462

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
                      GD+VVV  K 
Sbjct: 463 AIQKAVLESKQGDLVVVAGKG 483


>gi|92113659|ref|YP_573587.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
 gi|91796749|gb|ABE58888.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
          Length = 456

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 131/380 (34%), Gaps = 45/380 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++A+ G+ GKTTT  +LT  L +  +     IG    ++GV    +R+       +
Sbjct: 101 PGRRVVAVAGTHGKTTTASLLTWILEAAGQAPGFLIGGVPRNLGVS---SRLGEPGAPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP IAV+  +   H   F  +  I      +   +   G 
Sbjct: 158 VEADEYDTAFFDKRSKFVHYRPDIAVLGNLEFDHADIFPDLAAIERQFHHLVRTVPGQGQ 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +   +   E + A+        +  FG S +A +Q R   + ++     V+   +   
Sbjct: 218 LVVAAGEPALERVLAQG---CWSPVVRFGASDDASWQWR--LESADGRRFAVRHGERVAH 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N +  L   S     ++    AL+ F       +R       G   +I
Sbjct: 273 VDWALSGRHNVANAVAALAAASACGVALEAGAAALARFESPR---RRQEVRGEVGGIQVI 329

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQSFHIDLA 393
           D+ +  +P ++ A +  L+  +    GR +AV         LG M E    S +      
Sbjct: 330 DD-FAHHPTAIAATLEGLAAAT--DAGRLLAVIEPRSNTMRLGSMRERLPDSVA------ 380

Query: 394 EVLSLYNISHVWLS-GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVK 450
                     VW      V    +AL  +  V    S+ M  L   I +    GD +VV 
Sbjct: 381 ------AADRVWWYRPPEVEWSLEALAAACPVPATVSDEMPALVAAIVAEARPGDRIVVM 434

Query: 451 --SS-NSCGFYRLINLLLEE 467
              +       +L+  L   
Sbjct: 435 SNGAFGGIH-EKLLAALEAR 453


>gi|171463032|ref|YP_001797145.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192570|gb|ACB43531.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 468

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 122/368 (33%), Gaps = 40/368 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++A+ G+ GKTTT  MLT  L          G     + +  T++    +  + + 
Sbjct: 104 YGKHVLAVAGTHGKTTTSAMLTWILEFNGYK---PGYLIGGVPLNFTVSAYLGESKYFVI 160

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  A++  +   H   F+ +  I +    +   +   G +
Sbjct: 161 EADEYDTAFFDKRSKFVHYRPRTALLNNLEFDHADIFADLAAIETQFHHLVRTVPGDGLL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N ++     L +         +  FG+    ++ L       E     V+  GK +  
Sbjct: 221 VVNGEEP---ALASVITRGAWAPVERFGQESVNEWSL----ISQEADGFIVRKSGKEVAT 273

Query: 284 V-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           V        +G H   N L  +   + +      +  AL  F   +   +R         
Sbjct: 274 VKWAPDSGVMGRHNQLNALAAIASANHIGISPADSAFALVEFKNVK---RRLETIGVAND 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+ D+ +  +P ++   +  L      G  R +AVL    E    +    +  A++ S 
Sbjct: 331 VTIYDD-FAHHPTAITTTVDGLR--RRVGNARILAVL----EPRSNTMKLGVMKAQLPSS 383

Query: 399 Y-NISHVWLS----GFHVLA--LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                 V+      G   L   L + L           H  + ++ L   +      GD 
Sbjct: 384 LEAADKVFAYSANSGKESLGWDLAEVLSPLNQQEQWKAHAFDDLELLVKAVALEAKPGDH 443

Query: 447 VVVKSSNS 454
           ++V  SN 
Sbjct: 444 ILVM-SNG 450


>gi|89099607|ref|ZP_01172482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
 gi|89085760|gb|EAR64886.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
          Length = 450

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 128/384 (33%), Gaps = 45/384 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  +  M+      SIPV    +V  A      A         IAITG+ GKTTT  ++ 
Sbjct: 82  IPYHNPMIEGAMERSIPVIT--EVELAYQISEAAF--------IAITGTNGKTTTTTLVH 131

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L +  K+    G+      V   +A         + EL    L  I       RP IA
Sbjct: 132 EMLEAGGKSPLIAGNIGT---VATGVAEGARSDHTIVIELSSFQLMGIE----AFRPKIA 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++T +  AHL       +   AKA I +   +     +N D      L  +S A     I
Sbjct: 185 ILTNLYDAHLDYHGTRHDYFEAKANITKNQTEEDYFIINADQEAVIQLAEESRA----RI 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F  S     ++ +   C +  W+    +           G H  +N+L ++    +  
Sbjct: 241 VPFSVS-----RVLEAGACVKDGWICFNGEPVMKREDASLPGNHNLENILSSIAAAKLSG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     K +S F   +    R +           ++S   N  + K AI+         
Sbjct: 296 VDNKAIFKVMSSFAGVK---HRLQYIGEVDGRKFYNDSKATNILATKNAIAAFDV----- 347

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVH 425
               + +L    + G   +        + SL N+  +   G     +++A  L     + 
Sbjct: 348 ---PVILLAGGLDRGNGFEEL------IPSLANVETLITFGQTAGKIEEAGKLAGIKSIM 398

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
             + +             GDV+++
Sbjct: 399 RVDNVASAVPAAHRLSKPGDVILL 422


>gi|119773906|ref|YP_926646.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
 gi|119766406|gb|ABL98976.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 131/354 (37%), Gaps = 30/354 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  ML   L          IG    + GV   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTSTSSMLAWVLEHCGYEPGFLIGGVPQNFGVSARLGNSP----FFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P   VI  +   H   F  + +I    + +   +   G +   
Sbjct: 161 EYDSAFFDKRSKFVHYQPKTLVINNLEFDHADIFDSLADIQRQFSHVIRTVPGCGKVIWP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                   +  K      +   +F    +AD+ +R     ++    EV   G+   V+  
Sbjct: 221 KGSKAVAEVIEKGLWSEQE---TFSHQADADWSVR--PLAADGHKFEVLFGGEVQGVLDW 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H  +N +M +     +      AI+ALS F P +   +R       G  +L D+ 
Sbjct: 276 QLIGNHNMENAVMAIAAARHVGVAPAAAIEALSGFMPPK---RRLELIGEVGGVSLYDD- 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCE-MGELSQSFHIDLAEVLSLYN 400
           +  +P +++  +  L   +  G  R   VL      M   + + + +  + LA+   LY 
Sbjct: 332 FAHHPTAIETTLKGLR--AKVGNARIFVVLEPRSNTMKRGVHKDTLALSMALADEAFLYQ 389

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             ++   G+ +       P  + V Y   +D +   + + +  GD +VV  SN 
Sbjct: 390 ADNI---GWDIRDAMAQAPLPVDVDY--DIDSIVAKVTAKVQRGDQLVVM-SNG 437


>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
 gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
          Length = 451

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 154/447 (34%), Gaps = 57/447 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQKG 64
           L A     +  + +  +  + +DSR   P     A++ P  +    G D  +++ A Q  
Sbjct: 14  LGATGLSVVRYLCRQGITPLVMDSRDQPPGAEQLALEFPEVNLITGGFDCRYLVQASQIV 73

Query: 65  AG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               + ++T  + +   + I V G  DV     +L   A       +I ITGS GK+T  
Sbjct: 74  ISPGIAIDTPEIRAAIDMDIEVIG--DV-----ELFARAIKDRSPCVIGITGSNGKSTVT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++     +    YA  G+    +     L  +   VD  I EL    L      TH + 
Sbjct: 127 TLVGEMAKAAGLNYAVGGNIGIPV-----LDLLQKPVDLYILELSSFQL----ETTHSLN 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A    I+  H+  +S +E    AK  +++    +     N +DS  +     +    
Sbjct: 178 CISATCLNISEDHMDRYSDLEAYRQAKLALYDQ---SKRALFNREDSLTQPNDPMNQN-- 232

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                SFG  S   D    K  +    +     LQ  ++      +G H   N++  + +
Sbjct: 233 -----SFGLTSPVNDEWGVKDGKIVHGTTEIASLQDVAI------VGSHNHANLIAAMAL 281

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D +  I+    F    G   R     N      +++S   N  +  AA+  L +
Sbjct: 282 AYHAGIDKEPMIQVAKNFT---GLAHRCELVANIAAVAYVNDSKATNVGATVAALEGLGE 338

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  I ++G   +  + +               ++H+   G     +        
Sbjct: 339 ----HLGDIILIVGGDGKGADFTPLE-------TVFNKVAHLITLGKDGDKIAAL---KE 384

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           H H +++M             GD+V++
Sbjct: 385 HSHKADSMADAVKQAAELATAGDIVLL 411


>gi|288919054|ref|ZP_06413395.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
 gi|288349594|gb|EFC83830.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
          Length = 500

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 138/427 (32%), Gaps = 54/427 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G  LVVV   + A    L          L  L + A  A L      +A+ GS GKTT  
Sbjct: 73  GVDLVVVAPAVPAEDPEL---AEARRRELRILTRSAALAGLMQGHRGVAVAGSHGKTTVA 129

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            MLT AL +  +        +    V             G  +L +    E       ++
Sbjct: 130 MMLTAALQACGE--------DPTFAVGGDPGEAGSQTHAGSSDLMIVEADEDGGAFWQLQ 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH AV+T +A  HL  +  +  + ++ A     +E  G +    DD     L A++    
Sbjct: 182 PHGAVLTGVADEHLDFYRTVPALRASFATFLHRVEPDGLLVACVDDEAAWSLAAEAARQA 241

Query: 244 IKT------------------------IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            +                         +  +G   +AD ++   +  +  +  E+   G 
Sbjct: 242 ARAAEAAGTGLGVGTGVAGRSGGRGPWLTGYGFGPSADVRVVAAEVSTAGTSAEIIAHGV 301

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +     G H   +    L     L A  D  +  L+ F    G  +R+    +   
Sbjct: 302 RLGRMSLRVPGRHHLLDAAAALATGLALGAPADGLLAGLASF---AGVRRRFEPLGSAAG 358

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-- 396
             ++D+ Y  +P  + AAIS    ++    GR   V+     +   +      L E L  
Sbjct: 359 VRVVDD-YANHPDRVTAAISTARALAG--GGR--VVVAFQPHLYSRTALLAERLGEALRS 413

Query: 397 -------SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
                   +Y  +     G     +  A       V Y  +   +   +      GDVV+
Sbjct: 414 ADSVVVMDVYGAAQAPEPGAGGARVALAARGGQAEVDYEPSWSAVPGRLMDRARPGDVVL 473

Query: 449 VKSSNSC 455
              +   
Sbjct: 474 TLGAGDV 480


>gi|30316124|sp|Q9F1N2|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
          Length = 449

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 154/447 (34%), Gaps = 57/447 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQKG 64
           L A     +  + +  +  + +DSR   P     A++ P  +    G D  +++ A Q  
Sbjct: 12  LGATGLSVVRYLCRQGITPLVMDSRDQPPGAEQLALEFPEVNLITGGFDCRYLVQASQIV 71

Query: 65  AG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               + ++T  + +   + I V G  DV     +L   A       +I ITGS GK+T  
Sbjct: 72  ISPGIAIDTPEIRAAIDMDIEVIG--DV-----ELFARAIKDRSPCVIGITGSNGKSTVT 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++     +    YA  G+    +     L  +   VD  I EL    L      TH + 
Sbjct: 125 TLVGEMAKAAGLNYAVGGNIGIPV-----LDLLQKPVDLYILELSSFQL----ETTHSLN 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A    I+  H+  +S +E    AK  +++    +     N +DS  +     +    
Sbjct: 176 CISATCLNISEDHMDRYSDLEAYRQAKLALYDQ---SKRALFNREDSLTQPNDPMNQN-- 230

Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                SFG  S   D    K  +    +     LQ  ++      +G H   N++  + +
Sbjct: 231 -----SFGLTSPVNDEWGVKDGKIVHGTTEIASLQDVAI------VGSHNHANLIAAMAL 279

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D +  I+    F    G   R     N      +++S   N  +  AA+  L +
Sbjct: 280 AYHAGIDKEPMIQVAKNFT---GLAHRCELVANIAAVAYVNDSKATNVGATVAALEGLGE 336

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  I ++G   +  + +               ++H+   G     +        
Sbjct: 337 ----HLGDIILIVGGDGKGADFTPLE-------TVFNKVAHLITLGKDGDKIAAL---KE 382

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           H H +++M             GD+V++
Sbjct: 383 HSHKADSMADAVKQAAELATAGDIVLL 409


>gi|256850929|ref|ZP_05556318.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661143|ref|ZP_05862057.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934158|ref|ZP_06339436.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297205809|ref|ZP_06923204.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
 gi|256615991|gb|EEU21179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548080|gb|EEX24056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301772|gb|EFA94038.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297148935|gb|EFH29233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
          Length = 456

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 127/388 (32%), Gaps = 48/388 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L IP+    +   AL+              + +TGS GKTTT  + +
Sbjct: 83  IPYENPMVQKASELKIPIIT--EPEIALSASEA--------PFVCVTGSNGKTTTVMLTS 132

Query: 128 IA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L+        +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 EIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKD---DVLVVEISSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A I  I P HL     +E   +AK  +            N+D    + + +K  A  
Sbjct: 186 PKVAAIVDIYPTHLDYHKTMENYIAAKLNVTRFQTCDEYFIANFDQ---KEILSKEEATT 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +F  + ++       +    QS   +++            G H  QN ++ + I 
Sbjct: 243 KAKIQTFSMNDHSASYFVGDEYLESQSEKIMKISD------IKLPGRHNLQNSMVAIAIS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++ A+       LS F    G   R +         + ++S + N  +   AI   S+ 
Sbjct: 297 KLMGAENSDIQAVLSTF---AGARHRLQYVTTINDVKVYNDSKSTNIEAATVAIKAFSEP 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
                     ++G   + G    S        L   ++  V L G     L DA  ++  
Sbjct: 354 E--------VLIGGGLDRGFTFDSL-----VPLLKKHVKAVVLYGETRYLLADAARKAGI 400

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    T+             GDV+++
Sbjct: 401 KEIKIVNTLKEAVPVAYELTKPGDVLLL 428


>gi|226357454|ref|YP_002787193.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319444|gb|ACO47439.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 886

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 129/385 (33%), Gaps = 48/385 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-------- 158
           +  II+ITG+ GK+TT  M+   +    K      S   ++     L             
Sbjct: 477 RMPIISITGTNGKSTTARMVAHIMRHAGKVTGLTTSNGIYVDGEQILTGDTTGPKSAKVI 536

Query: 159 ----DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAE 212
               +V+  + E   +  G +R      R  +  +  I P HL       +E++A  K+ 
Sbjct: 537 LSDRNVEVAVLE--TARGGILREGLGFDRCDVGAVLNIQPDHLGVKGIDTVEDLAWVKSL 594

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSE 268
           I E +  +GT  LN DD     ++ ++           G +     +            E
Sbjct: 595 IVEVVTDSGTSVLNADDPLTWAMRHQARGRLALFSMQGGPTAPEHLRAHIADGGLALVRE 654

Query: 269 QSWMEVQL------------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            + +  +L            + + +     G      QN L    +      ++     A
Sbjct: 655 GTVVGDELVLYEDGQRTPLMRARDIPATLGGFAKVNIQNALAAAAMAVAQHIELPVIRAA 714

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           LS F          R  L  G    +   Y  NP+ ++    +++ + P   GR I VLG
Sbjct: 715 LSSFS-TSFEQSPGRLNLYDGHPFRVLLDYAHNPSGLEYLGDLVAHLRPA-RGRVIGVLG 772

Query: 377 --------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHV 424
                   DM +MGEL+     +L  ++   ++     +G     + +        +  +
Sbjct: 773 VAGDRRDADMRQMGELAARAFDEL--IIREDDLRRGRPAGEGARHVAEGALASGFPAERL 830

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
           H             S    GD+VV+
Sbjct: 831 HTILPEPEAVSAALSMARQGDLVVI 855


>gi|76880190|dbj|BAE45866.1| UDP-N-acetylmuramate-alanine ligase [Physcomitrella patens]
          Length = 615

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 162/451 (35%), Gaps = 79/451 (17%)

Query: 53  GHDFILHAVQKGA---------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           GH  +   V +G+           V    + V +  +L++P++   D    L K+     
Sbjct: 167 GHS-VAQLVPQGSQPPDAVVVSSAVGPGNEEVEAARALNVPIYKRGD---WLGKITEGY- 221

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDF 162
                 +IA+ G+ GKTTT  ML++ L ++ +   A +G+         +   +      
Sbjct: 222 -----QLIAVAGTHGKTTTTAMLSVVLRNLGEDITAIVGAQVPQFPDGGS--ALCGTTRK 274

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E       E       V PH+AV+T +   H+  F   E + +   +    ++  G 
Sbjct: 275 FVLEA-----DEYDGCFLGVSPHLAVLTNVEWEHVDMFPDEEAVKNMFKKFVLQIKPGGC 329

Query: 223 IFLNYDDSFFELLKAKSHA----------LGIKTIYSFGKSKNADFQLRKWKQCSE-QSW 271
           +    D +  + +                   + + +FG    +D++        +  + 
Sbjct: 330 LVACGDSAGAKSVLGLIEEEQEKDLGSPFPRERRVVTFGLGA-SDWRAIMLVPNPQGGTD 388

Query: 272 MEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK------- 323
             V  + + M  V     G +   N L  + ++S+L A+ ++ + A +    +       
Sbjct: 389 YTVVYKNRPMTRVSLRLPGMYNVLNSLAVIVVMSLLAAEKESDVGAQAKLMKRTAEAAGR 448

Query: 324 -----EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGE 368
                 G  +R+    +     +ID+ Y  +P  ++A +    Q            PH  
Sbjct: 449 ALGAFSGVRRRFDFVGSVHGCHIIDD-YAHHPTEVRAVLQAARQRYDQQPIWVIFQPHTV 507

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYS 427
            R  A L D       S +  + + +V +  NI +   ++G     L +A+       Y 
Sbjct: 508 SRLAAFLPDFA--PAFSAADRVIVTQVYAARNIPTEKVVTGED---LANAI-IGPPAVYI 561

Query: 428 ETMD--------GLFLFIQSSLVD-GDVVVV 449
             +D         L    ++ + D G++V++
Sbjct: 562 PDLDVVVERLSWELAALDKNEMNDRGNIVLL 592


>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 448

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 133/355 (37%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA IIAI+GS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARNAKAPIIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L     L       +A +  ++  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQLETTDHLGA----EVATVLNVSEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   +  N  D+    L  +         +SFG     DF+    ++ + + ++  
Sbjct: 207 RGARQ---VVFNRQDALTRPLLGEGM-----PCWSFGLGV-PDFKGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + Q           G H   N L  L +   +    D  + AL  F   E R +  R   
Sbjct: 258 EFQNLMPVRELKIRGAHNQANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWVR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +       ++S   N   + AA++ +  +    EG+ + + G     G+   +   DL +
Sbjct: 315 DLDGVAWYNDSKATN---VGAALAAIEGLGADIEGKLVLIAG-----GDGKGADFKDLRD 366

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  N   V L G     +  AL  ++ +    ++D      ++    GD V++
Sbjct: 367 PVA-ANCRAVVLMGRDRELIAQALGDAVPLVRVGSLDEAVQQCRALAHPGDAVLL 420


>gi|206895549|ref|YP_002247146.1| UDP-N-acetylmuramate--alanine ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738166|gb|ACI17244.1| UDP-N-acetylmuramate--alanine ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 451

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 135/394 (34%), Gaps = 46/394 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + +   +     IPV    ++L  L           +   +A+TG+ GK++T   
Sbjct: 73  SAIKPDNEEFRAALDEHIPVLHRSEILADLLD---------EGLSVAVTGTHGKSSTTGF 123

Query: 126 LTIALSSIKKTYACIGS-YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L  +      IG    N +G    L   PV     I E+  S    +R     +  
Sbjct: 124 IAQGLELLGFDPTFIGGAVVNPLGGNAKLGSGPV-----IGEVDESDGSLVR-----IPA 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V+  +   HL  +  +E +A+       G        LNY+D     +         
Sbjct: 174 SVKVVLNLDDDHLPFYGTMENLAATVHRFILGRPHNSIAVLNYNDPLLRGM-----DYSS 228

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303
           + ++  G   + D ++   +       + V  +GK   +++  I G H   N+ M   ++
Sbjct: 229 RRVHWCGFG-SPDIRIDALELEGVNPKISVCYEGKQFTILNDEIFGKHNGLNLAMAFSVL 287

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ- 362
             +  + ++A     V    +   +R +   +    +++ +    +P  +KA   V    
Sbjct: 288 VAMGINPNSAA---KVLEEVQTPRRRQQILGSVNGTSVMVDI-ALHPTELKALREVFESS 343

Query: 363 -------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                    PH   R   +  D  E      S   D+  +  +Y      +       L 
Sbjct: 344 KRRVLLIFQPHRYSRYKLLFKDFVE----ELSLWSDVV-ITEIYPSDE-PVEDTSSYPLY 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +  S +  +    + LF  + + +   D+V+ 
Sbjct: 398 EEI-GSRNKFFYSDKEKLFQDLPNIMNGYDIVLF 430


>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum SS9]
 gi|60390455|sp|Q6LMF4|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Photobacterium profundum SS9]
          Length = 447

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 121/343 (35%), Gaps = 39/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T   ++              G+          L  +  + D  + E
Sbjct: 107 TKPVVAITGSNGKSTVTSLIGEMAKEAGINVGVGGNIGF-----AALDMLVNEHDLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   AV   ++  H+  ++G+E+ + AK  IFE  E       N
Sbjct: 162 LSSFQL----ETTSSLQLKAAVYLNLSEDHMDRYNGLEDYSLAKMRIFEHAE---LAVYN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD       A         I SFG     D+ L       E+ ++ +  Q         
Sbjct: 215 RDD------LATFPVSFSHQITSFGFDNQ-DYGL--VTLHGEE-FLALDEQPIMKTSDIA 264

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  L +   +  D     +A        G   R +  +NQ     +++S 
Sbjct: 265 LVGRHNVANSLAALALADAVNIDRQAVCRA---LQRYNGLAHRCQLVVNQHDVKWVNDSK 321

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+  L     +  G+   ++G   +  + S     +L  VL+  N+  ++ 
Sbjct: 322 ATNLASTLAALKGL-----NLPGKLHLLVGGDGKGADFS-----ELKLVLADLNV-QLYC 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P        ETM         +   GD++++
Sbjct: 371 FGRDG---NQFMPLVDAPICIETMAQAMAIAADTAQKGDMILL 410


>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
 gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
          Length = 441

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 34/367 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG+    +     +  
Sbjct: 86  SDLELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGML--WEIYN 143

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + E     L      T   +P  + I  I P H+     ++   +AK  + +
Sbjct: 144 SDKDT-YFVIECSSFQL----ESTKHFKPQYSCIINITPDHIDWHGSMKNYVNAKKNVLK 198

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++     LN DD ++E  K  + A     IY    SKN + +    K      +    
Sbjct: 199 NQDENCYTVLNADDEYYEECKKFTKA----NIYDISTSKNIE-RGSFIK--DNSIYFSDS 251

Query: 276 LQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              K ++      IGYH  QN+L  + +  ++  + D+  + L  F   E    R     
Sbjct: 252 YCDKIIDLKDVKLIGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVE---HRLEFVR 308

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +       ++S   N  +   AI            + + +L      G   +   +D   
Sbjct: 309 DLSGVKYYNDSKGTNVDASVKAIESFD--------KNVIILA-----GGYDKKVSLDNFF 355

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
           +        + L G      +         +++  + M             GDVV++  +
Sbjct: 356 IAGKDKFKALILMGQTRDLFEQKAKEYGFKNIYLVDDMKQAVTQANKIAESGDVVLLSPA 415

Query: 452 SNSCGFY 458
           S S G Y
Sbjct: 416 SASWGMY 422


>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
 gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
          Length = 460

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 116/341 (34%), Gaps = 30/341 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L    R RS   +IAITG+ GKTT   ++     +        G+    +   L     
Sbjct: 100 ELFAQFRPRSS-KVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVET 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L      T  + P  A +  +   H+  + G+ E A+AKA I   
Sbjct: 159 DGAPDVYVLELSSFQL----ETTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARI--- 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L+  G   LN +D++   +     AL  + + +FG     +          +Q W+    
Sbjct: 212 LKGAGVQVLNREDAWCRNM-----ALPDQPMVTFGLDLPVESHAYGLLALRDQLWLAQGA 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H A N L  L +   +  D       L  F   +G   R     + 
Sbjct: 267 HPILHVEELRIPGLHNAANALAALALCRAIGVDWAPLQHVLREF---KGLPHRVEWVADL 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 D+S   N  +  AA++ L         + + + G   +  + S           
Sbjct: 324 HDIAFYDDSKGTNVGATCAALAGL-------PRKVVLIAGGDGKGQDFSP------LREP 370

Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLF 436
              N   V L G     ++ AL  S +   ++E+M+     
Sbjct: 371 VDQNARAVVLIGRDATLIEAALQGSPVPRLHAESMEDAVQQ 411


>gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 517

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 144/430 (33%), Gaps = 49/430 (11%)

Query: 7   FHDLLQ----AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++     +  H I        + I+ D+R + P   F   KG  +   +++    +
Sbjct: 18  LREIIRGDVWTLDPHDIKGF-DEPFSAITYDTRKVEPGT-FLCCKG-RFKA-EYLQGIDE 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +G    V   D      +   P   VDDV  A+  L+     R + +  ++ ITG+ GKT
Sbjct: 74  RGLAAYVSENDFS---DATQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGTKGKT 130

Query: 121 TTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDV-----DF 162
           TT  +    L+       A   S +N +     +             RM  +      ++
Sbjct: 131 TTAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEY 190

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKT 220
            + E+        R     +   +A    I+P H+S       E+    K +I +     
Sbjct: 191 LVMEVSSQAYKVDR--VFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCRA- 247

Query: 221 GTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             + L  D +  +L++  +    +  T ++ G    AD          + S   + + G 
Sbjct: 248 --LVLGADCARADLIRQDARHTSVPVTTFALGGDSMADVMAA--PANDDHSRFSIVIDGT 303

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQ 336
           S+ E+     G     N    + I      D     A  AL    P    G+       +
Sbjct: 304 SIGELSLTLDGDFNYANAAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTR 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I + Y  N AS+ A +  + Q     +     + G     G  +     ++    
Sbjct: 364 SNTIAIVD-YAHNYASVTALLDYVDQRYGSEKPEITLITGS---AGNKAYDRRAEIV-HA 418

Query: 397 SLYNISHVWL 406
           +   I H+ L
Sbjct: 419 AQDRIDHLVL 428


>gi|187735162|ref|YP_001877274.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425214|gb|ACD04493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 436

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 124/361 (34%), Gaps = 44/361 (12%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + +G +         R    IIAITG+ GKTTT  ++   L    KT    G+Y   + V
Sbjct: 88  ETIGEMELACRFYHGR----IIAITGTNGKTTTTSLVEKILLRAGKTAVACGNYG--VPV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L R  V  D    E+    L  IR       P +AV    AP H+  +  +E+   A
Sbjct: 142 AEILLRDSVP-DVLALEVSSFQLETIRDF----HPDVAVWLNFAPDHMDRYKSVEDYHRA 196

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSE 268
           K  IF+   +     +         LKA        ++ +F  +   AD   R      E
Sbjct: 197 KLHIFDNQTEKDLAVV-RSGERLPHLKA--------SVLTFSPEDPAADLYYRG-PLILE 246

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                + L+G ++         H A+N +  +     L    +TA     V       G 
Sbjct: 247 GGAPLLNLEGTTLNQ------RHNAENAMAAVLACRHLGIPAETAA---EVLKEFAPPGH 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R            +++S   N  +++AA+              I + G     G+     
Sbjct: 298 RCETVRTLDGVLWLNDSKATNLHALEAALKS-------QHSPVILIAG-----GKDKGLD 345

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++ L  +L    +    + G     L+ A   ++    +  ++      +S    GD V+
Sbjct: 346 YVPLRPMLKE-KVRACVVFGQIADQLQHAFSPAVPTEKAADVEACVAKARSLARPGDTVL 404

Query: 449 V 449
            
Sbjct: 405 F 405


>gi|238750103|ref|ZP_04611606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
 gi|238711647|gb|EEQ03862.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
          Length = 461

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 130/377 (34%), Gaps = 44/377 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M+   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMVAWILEACGYEPGFVIGGVPGNFNVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWLARKV--STDASVFEVLLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A + L  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGMCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L         V+ + +A  +    H+S  +D L   +  +    D ++V  SN  G
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAHWSADIDTLVDMVVKTAQPSDHILVM-SNG-G 437

Query: 457 F----YRLINLLLEEFP 469
           F     +L+  L ++  
Sbjct: 438 FGGIHDKLLAALSKKAE 454


>gi|2959999|emb|CAA76495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni]
          Length = 350

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 97/288 (33%), Gaps = 42/288 (14%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV------PLTLARMPV 158
             K  II ITG+ GKTTT   +   L  +       G+    I         LT + +  
Sbjct: 80  DEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILK 139

Query: 159 DVDFGI---------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +++ +         F +G+S    +   +  +     + T I   HL           A
Sbjct: 140 TLEYLLIATPKKCDFFIMGVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEA 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K   F         F+N D        A +    ++  +++G    A +Q++ +    E 
Sbjct: 200 KELFF---TDESLKFINKD--------ALAIKFNVRNAFTYGIENPALYQIKAYSL-EEG 247

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGK 328
               V  + ++  +    +G     N+L+    V+ L   D+    KA+S F      G+
Sbjct: 248 ISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGV--CGR 305

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             + A        +   +   P  ++  +  L         + I V G
Sbjct: 306 VEQVAKG------VIVDFAHTPDGIEKVLDTLKN------KKLIVVFG 341


>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
 gi|30316031|sp|Q8E9P6|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24350640|gb|AAN57193.1|AE015855_4 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
          Length = 439

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 153/448 (34%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       +F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGAETLASSFPEVKLIAGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                + +NT  V +   + I V G  DV   L    +A R   K  +I ITGS GKTT 
Sbjct: 71  IISPGIAMNTPEVRAALDMGIEVIG--DV--ELFAREIADR---KPCVIGITGSNGKTTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L       A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMLREAGIAVAVGGNIGIP-----ALDLLKENADIFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               +    +   H+  +S ++    AK  ++     + +I  N DD+    +  +    
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSIIFNRDDAL--TIPTEPMNQ 229

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
                 SFG +     +  +W  C  + +       + M +     IG H   N+L  + 
Sbjct: 230 N-----SFGLAPP---EGDEWGICDSKIY---HGHSEIMPITEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V  +  D          F    G   R      +G  T +++S   N  +  AA+  LS
Sbjct: 279 LVYAVGVDKQVMANVARTFT---GLSHRCEVVGVKGGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G   +  + S            L  ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAGGDGKGADFSPLEEP-------LTKVTHLITLGRDGNKIAALKEGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V   ++M             GD+V++
Sbjct: 385 IKV---DSMAAAVAKAAQLATSGDIVLL 409


>gi|313632489|gb|EFR99503.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL N1-067]
          Length = 470

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 95/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  ++      +PHI+VIT I  AHL   +   E   AK  
Sbjct: 170 VAENATSEQYISMELSSFQLMGVKTF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 225

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +   +   + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 226 IQQNQTEDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFDDEVIGA 285

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 286 R---------DSILLPGEHNLENVLASVAVAKTLGVANEEIMHVLETFKGVE---HRTQF 333

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 334 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 381

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 382 --LPFFKNVKALIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 437


>gi|149275988|ref|ZP_01882133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
 gi|149233416|gb|EDM38790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
          Length = 447

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 116/351 (33%), Gaps = 29/351 (8%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A+  + A  I ITGS GKTTT  +    L          G+  N     +  A    + 
Sbjct: 97  FAKRYTHAKTICITGSNGKTTTSLLTYHILKHAGLNVGLAGNIGNSFAAQVATA----EY 152

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E+    L ++    +  R  +AV+  I P HL  +   +   A++K  I +   +
Sbjct: 153 DWYVLEISSFMLDDM----YDFRADVAVLLNITPDHLDRYDYKLGNYAASKMRIAQNQSE 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             +     DD   E LKA         +Y F   K+ +            +         
Sbjct: 209 DDSFIYCADDE--ETLKAMKQQKVESRMYPFSIRKHIEQGAYLESNNIHININLNDQLTM 266

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+       G H   N + +  +  +L     T  +++  F   E    R          
Sbjct: 267 SITD-LALQGKHNIYNSMASGIVAKVLDIRNATIRESMGDFKNVE---HRLEHVAKISGV 322

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S   A+  ++          I ++G + +  +       ++ + +   
Sbjct: 323 EYINDSKATNVNSTWYALESVNT-------DVILIMGGVDKGNDY------EMLKDMVRQ 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
            +  +   G     + +A    + V  +  +              G+ V++
Sbjct: 370 KVRAIVCLGKDNKRIHEAFEDDVEVIVNTFSAHEAVQVAYHLAKKGNTVLL 420


>gi|318042994|ref|ZP_07974950.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0101]
          Length = 480

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 133/413 (32%), Gaps = 51/413 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      +       + +    DVL A+               +A+ GS GKTTT  +
Sbjct: 82  SAVPATNPELQEARRAGLEIAHRSDVLAAMIAAQS---------SVAVAGSHGKTTTSTL 132

Query: 126 LTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L +      A IG      G      +  +     + E   S    ++F     + 
Sbjct: 133 IASLLHATDHDPTAVIGGVVPAFGSNGRNGKGAL----LVAEADESDGTLVKF-----QA 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT +   H  +++ +  + +       G E+   +  N D          SH    
Sbjct: 184 WLGVITNLELDHTDHYADLVALIATLQRFGRGCEQ---LLANRDCPILSEQFNASHW--- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
              +S    +  DF     +   + +  E   QG+ +        G H   N    +   
Sbjct: 238 ---WSTTNPEGVDFAAIPVELSGDSTLAEFYEQGQCVGRFTLPLPGLHNLSNATAAMAAC 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +          A+         G+R+          ++D+ Y  +P+ + A ++    +
Sbjct: 295 RLHGVSFAELRLAVESLQAP---GRRFDYRGTWAERQVVDD-YAHHPSEVGATLATAQLM 350

Query: 364 S-------PHGEGRRIAVL--GDMCEMGELSQSFHIDLAE-----VLSLYNISHVWLSGF 409
                   P    R +AV          E  + F + L +     +  LY      ++G 
Sbjct: 351 VSSGRSPLPEVPQRVLAVFQPHRYSRTAEFLEPFAVALGQADEVLLAPLYAAGEAPIAGI 410

Query: 410 HVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFY 458
              AL  A+ R    + V  +++++ L   +    + GD+V+   +    G +
Sbjct: 411 SSHALAAAIQRLQPDLTVTVTDSLEELADAVAQRSLPGDLVLAMGAGDVNGLW 463


>gi|238756426|ref|ZP_04617735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
 gi|238705356|gb|EEP97764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
          Length = 459

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 129/372 (34%), Gaps = 40/372 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  M+T  L +        IG    +  V   L   P    F + E  
Sbjct: 105 VVAVAGTHGKTTTAGMVTWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  ++ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +          +  +K     + S  +V L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQEFV-----GDTGSWSAKKVTV--DASAYQVFLDNELVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL+ F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVQPADACRALADFINAR---RRLELRGEANGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  MG         L         
Sbjct: 330 FAHHPTAILATLAALRG-KVGGTARILAVLEPRSNTMK-MGLCKNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L         V  + DA  +     ++  +D L   I  +   GD ++V  SN  G
Sbjct: 382 DEVFLFQPQHIPWQVAEVADACIQ--PASWNADIDTLVEMIVKTAQPGDHILVM-SNG-G 437

Query: 457 FYRLINLLLEEF 468
           F  + N LLE  
Sbjct: 438 FGGIHNKLLEAL 449


>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 467

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 137/376 (36%), Gaps = 49/376 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +++    +  +     G+    +   L +       D  + EL  
Sbjct: 121 IVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAAL---LPMLPEVSPEDVAVVELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     ++    P+IAV+T + P HL +   ++E   AK  I    ++     L Y++
Sbjct: 178 FQL-----ISMHASPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGI 288
                ++A      +           A  +      C +E   +   L  K +++     
Sbjct: 233 EISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCMAEDGVVTPFLAQKDVKLR---- 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+L     V      V+   +  S F   E R +  R           ++S   
Sbjct: 289 GLHNIENLLAAAAAVWG-EVPVEAIRQVGSTFTGVEHRIEPVRTL---DGVLYYNDSIGT 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P    A +          + + I + G     G      +  LA  + + ++ ++ L G
Sbjct: 345 SPTRTIAGLRSF-------DRKVILIAG-----GYDKHIPYEPLAPEI-IAHVKNLVLMG 391

Query: 409 FHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFY-- 458
                ++ A+         ++ + +++ M       +++   GD++++  +S S   Y  
Sbjct: 392 ATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIILSPASASFDLYPN 451

Query: 459 ---------RLINLLL 465
                    +++N L 
Sbjct: 452 FEVRGREFKKIVNALK 467


>gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
 gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
          Length = 442

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 139/427 (32%), Gaps = 80/427 (18%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G+++V T   A       P     ++   LN             II ITG+ GKTTT  +
Sbjct: 26  GVLLVKTPTNARFIPPHTPYIEASELKHYLN---------VNIPIIGITGTNGKTTTAAL 76

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL---------TLARMPVDVDFG--------IFELG 168
           +   L ++  + A +G+    I             +L  +  D+           + E+ 
Sbjct: 77  IAHLLQALGHSCALLGTRGFFIHNAQVKPKGLTTPSLLELYSDIARARAEGAKFFVMEVS 136

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              + + R L   +     V T I   HL     IE   + K +    L   G   +N D
Sbjct: 137 SHAIAQERIL--GLEFAAKVHTNITSDHLDYHGDIETYRAIKNQF---LSDEGLKIVNLD 191

Query: 229 DSFFELLKAKSHALGIKT-----IYSFGKSK--------NADFQLRKWKQCSEQSWMEVQ 275
           D         ++    +      + ++            +AD + R+    + +  +   
Sbjct: 192 DPHVRFNPTNAYGYACERKTHLSVNAYSLQPEISAHVEFHADPRARRDPNSNAEMGI--- 248

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCAL 334
                  V    +G H   N+L  L  V  LT   +++    L  F   EGR +      
Sbjct: 249 -------VHAPLMGLHNLHNLLGALLCVRALTKQPLESLCSLLGDFPGVEGRMEVV---- 297

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +Q    ++D ++ A             QI    + ++I V+      G+  +S    + +
Sbjct: 298 HQNPLVVVDFAHTA---------DGFVQIFNSFKAQKIKVV--FGAGGDRDKSKRPLMGQ 346

Query: 395 VLSLYNISHVWLSG----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDG 444
           V S + +     S        LA+ + +   I       V              S L   
Sbjct: 347 VASTHALKSYITSDNPRSEEPLAIIEDILSGIASELRTRVVVEPDRKRAIELALSELQSD 406

Query: 445 DVVVVKS 451
           +V+++  
Sbjct: 407 EVLLILG 413


>gi|300021779|ref|YP_003754390.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523600|gb|ADJ22069.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 478

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 143/417 (34%), Gaps = 55/417 (13%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VV++T        + +     + +    ++L  L +L            I++TG+ 
Sbjct: 66  GARYVVISTAVKPFNPELIAARQKGLTIIRRAEMLAELMRLYS---------TISVTGTH 116

Query: 118 GKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTTT  +L+   +      T    G  N+      + AR+       I E   S     
Sbjct: 117 GKTTTTSLLSHIFTEAGEEPTVITGGIINSW----GSNARLGQGKWM-IVEADESDGTFT 171

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R  T      I ++T I P HL  F  +E +        + +   G      D      +
Sbjct: 172 RLPTE-----IGIVTNIDPEHLDYFGSVEAMHHEYEAFLKNIPFFGLAVACIDHPVVRDM 226

Query: 236 KAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------KSMEVVHHG 287
             + +     + + ++G+S++AD  L+  +     ++ +  L         K  +     
Sbjct: 227 IERLNLRADGRRLLTYGQSQDADLVLQSIRIEGNTTYFDATLTASVKGGARKLTDWSVPI 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N L  + + +    +      A++ F   +   +R++         + D+ Y 
Sbjct: 287 PGAHNALNALAAIAVATQAGLEDAKIKAAMAGFSGVK---RRFQFTGEWNGVGIYDD-YG 342

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +PA + A   VL+      +G+ IAV+          +    D A          V  L
Sbjct: 343 HHPAEISA---VLAAARGGTKGKVIAVVE--PHRYTRVRDLFEDFARCFKDADHVIVAPL 397

Query: 399 YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           Y      ++G     L   +  +        +    +   I+     GD+VV   + 
Sbjct: 398 YTAGEPPITGIDNQTLAARIATAGRRSAEAVDEPGAIAAAIKRVAGPGDIVVCLGAG 454


>gi|332160056|ref|YP_004296633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607383|emb|CBY28881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664286|gb|ADZ40930.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862055|emb|CBX72221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 461

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 124/358 (34%), Gaps = 39/358 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI G+ GKTTT  M+   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAIAGTHGKTTTAGMVAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   F  ++ I      +   +  TG I + 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK     + S  EV L  + + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--AGDASVFEVFLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAR---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++ A ++ L      G  R +AVL      M  +G         L         
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMK-LGMCRNELAPSLGR------A 381

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V+L         V+ + +A  +    ++S  +D L   +  +   G+ ++V  SN 
Sbjct: 382 DEVFLFQPQHIPWQVVEVAEACIQ--PAYWSADIDTLVDMVVKTAQPGNHILVM-SNG 436


>gi|315283075|ref|ZP_07871346.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
 gi|313613283|gb|EFR87156.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
          Length = 461

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 161 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 217 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 276

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  ++ L  F   E    R + 
Sbjct: 277 R---------DNILLPGEHNLENVLASVAVAKTLGVSNEEIMRVLETFKGVE---HRTQF 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 325 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 372

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 373 --LPFFKNVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|194288895|ref|YP_002004802.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222730|emb|CAQ68733.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 856

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 133/395 (33%), Gaps = 50/395 (12%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A++G+ GKTTT  ++T  +++        G+   +I     
Sbjct: 455 EAIVSTMFADGDDGRIPVVAVSGTNGKTTTVRLITHIMATSGLRMGMTGTDGVYIQGERI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +  DVD  +FE   +  G +R      R  +AV+T +    HL  
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFE--TARGGLLREGLAFDRCDVAVVTNVGEGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              + +E++A  K+ I + +   G   LN  D     +       G  T ++    + A 
Sbjct: 573 SYINSVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADAC--PGSVTFFAHDPDQPAM 630

Query: 258 ----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                       +   +  + +   EV++    + +  +G      +N + ++     L 
Sbjct: 631 ATHRAQGKRVVFVDGAEIVAGEGDAEVRIALAEIPLTRNGTIGFQVENAMSSIAAAWALG 690

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     + L+ F              +    TLI + Y  NP ++ A  + +  I    
Sbjct: 691 IDWSVIRRGLATFVNDAQTAPGRFNVFDYRGATLIAD-YGHNPDAILALCNAIESIPAK- 748

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDA 417
             RR+ V+    +  +        +   +       V L           G  +  L++ 
Sbjct: 749 --RRVVVISGAGDRRDDDIRRQTQILGGV----FDEVVLYQDQCQRGRADGEVLALLREG 802

Query: 418 LPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           L  +      E + G         S L  GD+ ++
Sbjct: 803 LQGAQRASQVEEIRGEFLAIDTALSHLQPGDLCLI 837


>gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans]
 gi|133740378|emb|CAL63429.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans]
          Length = 856

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 135/398 (33%), Gaps = 56/398 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A+ G+ GKTTT  ++   L + K       +   +I     
Sbjct: 457 EAIVSTMFAEGDDGRIPVVAVAGTNGKTTTVRLIAHILQANKHRVGMTTTDGVYIENQRI 516

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          M  DVD  +FE   +  G +R      R ++AV+T I    HL  
Sbjct: 517 DTGDCSGPRSARNVLMHPDVDAAVFE--TARGGVLREGLGFDRCNVAVVTNIGVGDHLGL 574

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + +   GT  LN  D     + A        ++  F K  N  
Sbjct: 575 NFISTVEDLAVVKRVIVQNVAPNGTAVLNAADPMVANMAASCPG----SVTFFAKDGNHA 630

Query: 256 --ADFQLRKWK--------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             A  + +  +          + +   E ++    + + H+G+     +N +  +G    
Sbjct: 631 VLATHRAKGHRVVFLDGTSIVASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWS 690

Query: 306 LTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L    D  +  L  F         R+    + G   + D  Y  NP +++A    +  + 
Sbjct: 691 LNLSWDIVLNGLRTFENSAATTPGRFNLFTHHGATVIAD--YGHNPDAIEALTHAVEAMP 748

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                RR+ V+    +  +       ++           V L           G  +  L
Sbjct: 749 AK---RRMVVISGAGDRRDDDLRRQTEILGDA----FDDVILYEDQCQRGRADGEVLALL 801

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L ++      + + G         +SL  GD+ ++
Sbjct: 802 RQGLTKAKRAKSIKEIHGEFLAIDTALASLQAGDLCLI 839


>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
 gi|167017286|sp|A8MH34|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
          Length = 454

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 124/361 (34%), Gaps = 39/361 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A RL ++  I+AITG+ GKTTT  ++     +  +    +G+        ++ A
Sbjct: 98  IGEIELAYRL-AQGHIVAITGTNGKTTTTSLVGEIFKNAGRRTHVVGNIGV---AFISKA 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E     L  I       RP +  I  + P HL+    +E    AK  IF
Sbjct: 154 LETTADDVIVIEASSFQLESI----VDFRPQVGAILNLTPDHLNRHKTMENYQKAKFNIF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQS 270
           +         +NYDD     L+ +S  +  K +Y F +     +    +  K     +  
Sbjct: 210 KNQGAEDIAVINYDDV---KLREESKQIYAKKVY-FSRRTLLEEGVFVEDGKIVALKDGH 265

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             E+  +           G H  +N L    +   L  D+D     L  F   E    R 
Sbjct: 266 KKEIISKDDIF-----IPGNHNLENALAATAMTLSLGVDIDVIQHTLKTFKGVE---HRT 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   NP +    I  ++          I ++    + G     F  
Sbjct: 318 EIVDVIHGVRFINDSKGTNPDASIKGIEGINT--------PILLIAGGYDKGSDFDEF-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
                     + H+++ G     L +   +   I V   + +D          + GD V+
Sbjct: 368 ---INAFDGKVKHMFVYGETANTLMETAKKLNFIDVTKVQNLDEAVKKAYDIAIQGDTVL 424

Query: 449 V 449
           +
Sbjct: 425 L 425


>gi|328948150|ref|YP_004365487.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema succinifaciens
           DSM 2489]
 gi|328448474|gb|AEB14190.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema succinifaciens
           DSM 2489]
          Length = 499

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 140/423 (33%), Gaps = 49/423 (11%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KT 136
              L +P+    + LG L++          A    I G  GKTTT  +    L  I   +
Sbjct: 96  AKKLGVPLLLYSEALGELSR---------TAYSCGICGVHGKTTTTGLAGTMLKEIDLPS 146

Query: 137 YACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
               GS  +  G   T+      + D    +  ++   E +       P   ++T++   
Sbjct: 147 QVLAGSIISSFGNSCTMTSSEFSNSDEAEKKYFVAETCEYQRHFMSFCPQKIILTSVESD 206

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSK 254
           H   +    +I +A  +    L + G +    DD         +           +G++ 
Sbjct: 207 HQDYYPTFSDIQNAFVDYICKLPENGDLIFCADDKGACETAELAKEKRNDINFIPYGENA 266

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV---- 310
             DF+L   K    + +  +       E   H  G H A+N      +   L        
Sbjct: 267 EGDFKLSFGKVEGGKQYFTI----GKTECALHVPGNHNARNAAAAFALCCRLLKTAGKNP 322

Query: 311 ----DTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISP 365
               D     L  F   + R +   C  N+ G   +  + Y  +P ++K   + L+    
Sbjct: 323 QEYFDKLKNGLEKFSGGKRRSEIVGCVKNKFGQDIIFIDDYGHHPTAIK---TTLAGFRQ 379

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISHVWLSGFH--------VLAL 414
             +  +I V   M      + +   + A   E   +  I+ ++ S              L
Sbjct: 380 FYKDHKIIV-DFMSHTYTRTAALLEEFASSFESADMVVINKIYGSAREKADSTTVTGKIL 438

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSL------VDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +V Y++  +     I+S L       DG V V   +     +++  ++LE+
Sbjct: 439 AEHAKKYHPNVVYAKEFEEAAQIIESELNKKSDAKDGYVFVTMGAGDN--FKVGKMVLEK 496

Query: 468 FPA 470
           F  
Sbjct: 497 FKV 499


>gi|206895846|ref|YP_002247446.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738463|gb|ACI17541.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 433

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 119/383 (31%), Gaps = 47/383 (12%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
             S D R     + FFA  G H+D    I   ++  A L++   +   S       V   
Sbjct: 22  NFSSDDRWFMDGDIFFAFTGAHFDARTLIPE-LKNKAKLIITEKEATGSN------VIYR 74

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL----------SSIKKTYA 138
            D      K   A        ++ ITG+ GK+T    L+  L           +    + 
Sbjct: 75  PDARQIYKKFIKAGAKVYPLHVLGITGTKGKSTIAWWLSSLLGFGYMGTLGIRAKDVKFV 134

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +      +  T  R   D    + EL    L E R     +     V TT  P H+ 
Sbjct: 135 LPTTTTGADALFNTYRRTGEDHW--VVELSSIGLAEDRL---PLPLEGLVWTTFEPEHMD 189

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                     AK + F  L+K     L       + +          T   +G + N  F
Sbjct: 190 YHKTTYAYFLAKKKAFSYLKKGTFALL------GQNVPQADIGTPYLT-LRYGDTGN--F 240

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   ++   +  +++        V     G   A + + T+    +         K   
Sbjct: 241 YILDRREYEWEQEVKIYTPQGPSVVHIPMPGKVFAHDAVGTVAAAFL--------WKGTK 292

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           +         R    +  G   +ID  +   P S+ A +  ++Q      G    V+   
Sbjct: 293 LEGEFPSVPVRMNHVIINGIEMVID--FAHTPESIDACLQTVAQ----RWGNDFVVIH-- 344

Query: 379 CEMGELSQSFHIDLAEVLSLYNI 401
              G   Q+   ++ +V++ Y I
Sbjct: 345 GATGYEPQNKSYEIIKVINRYGI 367


>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
 gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
          Length = 449

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 126/346 (36%), Gaps = 28/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +IAITGS  K+T   ++     +        G+    +   L       + D  
Sbjct: 105 REISAPVIAITGSNAKSTVTTLVGEMAEAAGINVGVCGNIGTPVLEMLE----QPEKDLY 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ +R  +A +  I+P H+  +  +++   AK  IF G +    +
Sbjct: 161 VIELSSFQL----ETTNDLRAEVATVLNISPDHMDRYDSMQDYYKAKHRIFRGAKN---V 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DDS    L  +      +T +  GK    D +L    +     W+ + L       
Sbjct: 214 VVNRDDSLTAPLLPQGVK---QTAFHLGK---PDLKLFGLIEDQGDVWLALGLDKLIAAS 267

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +       +D  + AL  F    G   R          T  +
Sbjct: 268 ELKMRGRHNLANALAALALGQAAGLPMDAMLNALRGFT---GLRHRCEWVAEHQGVTYFN 324

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AA++ L        G  + + G     G+   +  ++LAE L  Y  + 
Sbjct: 325 DSKGTNVGATVAALNGLGGTLSEENG-IVLIAG-----GDGKGAEFVELAEPLRNYGRAL 378

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V++ G     L  +    I+   + TMD   +        GD+V++
Sbjct: 379 VYI-GVDGERLA-SQCGDINSRPAATMDEAVVIASQLAKSGDIVLL 422


>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           putrefaciens CN-32]
 gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           putrefaciens CN-32]
          Length = 439

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 128/375 (34%), Gaps = 59/375 (15%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             K  +I ITGS GK+T   ++   L       A  G+          L  +  + +  +
Sbjct: 106 DRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGVP-----ALDLLSENAEIFV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH +    +    +   H+  +S ++    AK  ++     + +I 
Sbjct: 161 LELSSFQL----ETTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSII 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD+    +  +          SFG +     +  +W  C  +        G+S  + 
Sbjct: 214 FNRDDAL--TIPTEPMNQN-----SFGLAPP---EGDEWGICDSKI-----YHGRSEIMP 258

Query: 285 H---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H   N+L  + +V  +  D     K    F    G   R      +G  T 
Sbjct: 259 ITEVSLIGSHNHANLLAAMALVYAVGVDKQVIAKVARTFT---GLSHRCEVVGIKGGVTY 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  +  AA+  LS       G  I + G   +  + S      L E LS   +
Sbjct: 316 VNDSKATNVGATVAALDGLSD----HLGDIILIAGGDGKGADFSP-----LVEPLSK--V 364

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--------KSSN 453
           +H+   G     +      +I V   ++M        +    GD+V++          SN
Sbjct: 365 THLITLGRDGNKIAALKEGAIKV---DSMAAAVAKAAALATSGDIVLLSPACASLDMYSN 421

Query: 454 SCG----FYRLINLL 464
                  F  L+ LL
Sbjct: 422 FMARGDDFRNLVELL 436


>gi|254831722|ref|ZP_05236377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 10403S]
          Length = 455

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|148257421|ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. BTAi1]
 gi|146409594|gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp.
           BTAi1]
          Length = 466

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 107/320 (33%), Gaps = 24/320 (7%)

Query: 55  DFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           DF    +  G  L   V    V       I V G  ++           R    A  +AI
Sbjct: 65  DFAALVLAPGVPLTHPVPHWSVLKAREAGIEVIGDIELF-----CRERRRHAPDAPFVAI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  ++   + +        G+    I         P      + E+    + 
Sbjct: 120 TGTNGKSTTTALIAHLMQTAGYDTQLGGNIGTAILS----LEPPRMGRVHVIEMSSYQID 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               LT  + P + ++  ++  H+     IE  A+ K  +  G++  GT  +  DD F  
Sbjct: 176 ----LTPSLDPTVGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPEGTAIIGVDDGFSR 231

Query: 234 LLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +  +    G + +    K+  AD    +     + +  +  EV   G     +    G 
Sbjct: 232 AIADRLDQAGKRVVRVSVKNPLADGLYVEHETILRSASGARSEVARLGG----IGSLRGQ 287

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H AQN          +    D   + L  F    G   R      +G    +++S   N 
Sbjct: 288 HNAQNAACAAAATLAIGVKQDVLQQGLRSF---PGLVHRMEQVGRRGHVLFVNDSKGTNA 344

Query: 351 ASMKAAISVLSQISPHGEGR 370
            +   A+S  + I     G+
Sbjct: 345 DATAHALSSFADIFWIAGGK 364


>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
 gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
          Length = 441

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 132/371 (35%), Gaps = 42/371 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG+    +     +  
Sbjct: 86  SDLELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGML--WEIYN 143

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + E     L      T   +P  + I  I P H+     ++   +AK  + +
Sbjct: 144 SDKDT-YFVIECSSFQL----ESTKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLK 198

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++     LN DD ++E  K  + A     +Y    SKN    +++     + S   + 
Sbjct: 199 NQDENCYTVLNADDEYYEECKKFTKA----NVYDISTSKN----VKRGSFIKDNS---IY 247

Query: 276 LQGKSMEVVH-----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                 + +        IGYH  QN+L  + +  ++  + D+  + L  F   E    R 
Sbjct: 248 FSDSDCDKIIDLKDVKLIGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVE---HRL 304

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +       ++S   N  +   AI            + + +L      G   +   +
Sbjct: 305 EFVRDLSGVKYYNDSKGTNVDASVKAIESFD--------KNVIILA-----GGYDKKVSL 351

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
           D   +        + L G      +         H++  + M             GDVV+
Sbjct: 352 DNFFIAGKDKFKALILMGQTRDLFEQKAKEYGFKHIYLVDDMKQAVTQANKIAESGDVVL 411

Query: 449 VK-SSNSCGFY 458
           +  +S S G Y
Sbjct: 412 LSPASASWGMY 422


>gi|326562287|gb|EGE12613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 103P14B1]
 gi|326574539|gb|EGE24480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis CO72]
 gi|326575490|gb|EGE25415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 101P30B1]
          Length = 460

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 122/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  +    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPANTPSLETTLDKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V+ A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLAPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L   LK+A+  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N   F     RL++ L
Sbjct: 443 NG-DFENIHGRLLDAL 457


>gi|189423741|ref|YP_001950918.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
 gi|226711913|sp|B3E3Y4|MURD_GEOLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189420000|gb|ACD94398.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
          Length = 446

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 122/351 (34%), Gaps = 44/351 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++AITG+ GKTTT  +      +   +    G+  + +   + L      V+  + 
Sbjct: 106 ITAPLVAITGTNGKTTTTTLAGELFRANGFSTYVGGNIGDPL---IDLPASGEPVERAVA 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L  I       RP +A +  I   HL  +   +   +AK  IFE         +
Sbjct: 163 EISSFQLEWIS----SFRPKVAALLNITEDHLDRYPSYQAYINAKLRIFENQTADDFAVV 218

Query: 226 NYDDSFF----ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           N DD       + LKA+      +   + G               S +  +  +  G+ +
Sbjct: 219 NRDDELVWQAAQSLKAQLFPFSRRHELTEGI-------------FSREGELLFRHHGQEL 265

Query: 282 EVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +   G    G H  +N++  L    +L    +T+++ L+ F        R         
Sbjct: 266 SIPTAGFRLQGVHNLENIMAALACCLLLGCQRETSLELLNRFEALH---HRMEFVREVAD 322

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  S+  A+     I+    G+         + G  +      LAE++  
Sbjct: 323 VRYFEDSKATNVGSVAKALESFENITLIAGGK--------DKGGSYAP-----LAELVQQ 369

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + H+ L G     ++  L      H + T++            G VV++
Sbjct: 370 R-VRHLVLIGEAAERMQQELGDLTATHKAATLEEAVQLSADLTAPGGVVLL 419


>gi|298245969|ref|ZP_06969775.1| UDP-N-acetylmuramate/alanine ligase [Ktedonobacter racemifer DSM
           44963]
 gi|297553450|gb|EFH87315.1| UDP-N-acetylmuramate/alanine ligase [Ktedonobacter racemifer DSM
           44963]
          Length = 500

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 139/434 (32%), Gaps = 68/434 (15%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IPV    ++LG L              ++++ G  GK++T  ML++ L      
Sbjct: 84  EAQRRGIPVKTWQELLGTL---------TEGKCLLSVCGVHGKSSTTSMLSLMLVDAG-- 132

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                  +    +   + R   +   G  E  ++   E         P +AV+  I   H
Sbjct: 133 ------MDPTCEIGAVVPRFGANYRLGQSEYFVNEADEFNHNFWHYHPRLAVVNAIEFEH 186

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTG------TIFLNYDDSFFELLKAKSHALGIKTIYSF 250
              F   EE   A      G++         TI +N D      L A         +   
Sbjct: 187 PEFFHNYEEFLYAFEHFVRGMDIASNWPLPPTIIVNIDSPGCRDLCAHLDGWAGSIVNYS 246

Query: 251 GKSKNAD----------FQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMA 293
            +  + D          F+    K   E +   V+L+          +       G H  
Sbjct: 247 IQDLSRDTPEHIGDRLTFEAYDVKLEGE-TCFRVRLRNAPAGVKLPDVLYRLQLPGIHYV 305

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLID----ESYNA 348
           QN L  L     + A +++  + L  F     R + R++ AL  G  T  D    + Y  
Sbjct: 306 QNALAALAAAYTVGAPLESIARTLEGFTGARRRFEIRHQGALVVGERTCDDVILVDDYAH 365

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI------- 401
           +P ++   +    +  P    R IAV      M   +++F     +     +I       
Sbjct: 366 HPTAIALTLEAARKRYP--GRRLIAVY--QPHMYSRTKTFFEQFLQAFDAADIAIISDIF 421

Query: 402 --SHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V     H   L   + +          + Y  ++      IQ++L  GD+V++  +
Sbjct: 422 PAREVDTGLVHTRQLVSEIAKRPRFSQEGAQILYGGSVQETTQTIQNNLRSGDIVLIMGA 481

Query: 453 NSCGFYRLINLLLE 466
                Y +  +L +
Sbjct: 482 GDI--YTVSEMLKQ 493


>gi|320539530|ref|ZP_08039197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
 gi|320030383|gb|EFW12395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
          Length = 454

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 129/363 (35%), Gaps = 26/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M+T  L +        G     +     ++       F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMVTWVLEACG---YQPGFIIGGVPGNFEVSARLGGSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                       +   P   V++ +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRAKFMHYSPRTLVMSNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           +D+  + + A       + +      +   +  +  K   + S   V L G+ + EV   
Sbjct: 222 NDNHLKQVMAMGCWSEQELV-----GEEGTWCAQ--KLTPDASCYAVFLNGEQVGEVQWA 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A +AL  F       +R          T+ D+ +
Sbjct: 275 LVGEHNMHNGLMAIAATRHVGVQPADACRALGNFINAR---RRLELCGEANGVTVYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P ++ A ++ L      G  R +AVL       ++  S H +LA  L   +   ++ 
Sbjct: 331 AHHPTAILATLAALRA-KVGGTARILAVLEPRSNTLKMGISKH-ELAPSLGRADEVFLFQ 388

Query: 407 SGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLI 461
                  +   +   +   H+S  +D L   I  +   GD ++V  SN  GF     RL+
Sbjct: 389 PPNIPWQVAQVVESCVQPAHWSADLDILVEMIVKTTQPGDYILVM-SNG-GFGGIHDRLL 446

Query: 462 NLL 464
             L
Sbjct: 447 AAL 449


>gi|288800560|ref|ZP_06406018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332773|gb|EFC71253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 443

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 130/382 (34%), Gaps = 47/382 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            MV  I   +IP+          +++  A R    + +I ITGS GKTTT  ++      
Sbjct: 77  PMVKEIAKRNIPII---------SEIEFAGRYT-NSKMICITGSNGKTTTTSLIYHIFKE 126

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                +  G+    + + +          + I E+    L ++    +  R + AV+  I
Sbjct: 127 AGYDVSLAGNIGKSLALQV----AEAPHAYYIIEISSFQLDDM----YDFRANTAVLLNI 178

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSF 250
            P HL  +   ++    AK  I +   K  +     DD       A+ H   I+    +F
Sbjct: 179 TPDHLDRYEYKMQLYTDAKMRIIQNQTKDDSFVYWADDDVV---AAELHKYNIEAQQLTF 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTA 308
            ++ +          C +   + V+   +          +G H   N L      +    
Sbjct: 236 SENASNSVAA-----CVDNGEIVVKKPVEFTMSRAELSLLGRHNLYNSLAAALAAAANGV 290

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           DV+   + L  F   E    R            I++S   N  + + A+  ++       
Sbjct: 291 DVEAIKQGLRTFAGVE---HRLEYVTTANGVRYINDSKATNVDACRWALESMTT------ 341

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYS 427
              I +LG + +  + ++       + L L     +   G     L +      + +  +
Sbjct: 342 -PTILILGGLDKGNDYNE------IKQLVLDKCKALVFMGADNSVLHEFFDGLGLEIADT 394

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            +M       +   V+GD +++
Sbjct: 395 HSMKECMQECKKRAVEGDTILL 416


>gi|269219531|ref|ZP_06163385.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211110|gb|EEZ77450.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 493

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 79/488 (16%), Positives = 142/488 (29%), Gaps = 74/488 (15%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A      G   +         +R +A +    +I      GHD    A    A 
Sbjct: 27  VAELLAASGAEVSGSDSKESQT-----TRRLAAEGIAVSI------GHD----ARHVPAD 71

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V +  +             +     L++    A        +A+ G+ GKTTT  M+
Sbjct: 72  AVLVVSSAIRESNPELA--VARERSQKVLHRSQALALAARGRDFVAVAGAHGKTTTSAMI 129

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            +AL  +               V              + E   S    + +      P +
Sbjct: 130 AMALREVGLD---PSWAIGGSVVGAGGGSHLGGGRAFVAEADESDASFLNY-----EPLV 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T + P HL ++   E    A AE    L+  G +    D      +   +   G + 
Sbjct: 182 EVVTNVEPDHLDHYGSTEAFEEAFAEFSRLLKADGVLVACADSPGALRMAVGAIDRG-QR 240

Query: 247 IYSFGKSKN-----ADFQLRKWKQCSE-------------------------QSWMEVQL 276
           + ++G+        A  ++   +  S                           +      
Sbjct: 241 VVTYGRGDGPRGAAAHVRVSPVRAQSGEARQEKAASGEAEPDESPREASRPLGASGTFDD 300

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               + V    +G H   N          L    +    ALS F    G G+R+      
Sbjct: 301 GSGPVRVDLSVVGDHNLLNAAAAWAAGVELGVGREEMASALSHFL---GTGRRFELRGEA 357

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G   +ID+ Y  +P  ++A +     +   G  R   VL     +   + +F    AE L
Sbjct: 358 GGVRVIDD-YAHHPTEVEATLRAARAVVGDGALR---VLFQ-PHLYSRTANFADRFAEAL 412

Query: 397 SL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           SL         Y        G     +   +  +    +          + +    GD+V
Sbjct: 413 SLADDVVVTSVYAAREDPTPGVEGDLVTSKMDPA-RAQFVPDRFEAARALAARARPGDLV 471

Query: 448 VVKSSNSC 455
           +   +   
Sbjct: 472 MTVGAGDV 479


>gi|159038774|ref|YP_001538027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salinispora
           arenicola CNS-205]
 gi|157917609|gb|ABV99036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinispora
           arenicola CNS-205]
          Length = 448

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 140/413 (33%), Gaps = 56/413 (13%)

Query: 51  YDGHDFILHAV---------QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           +DGH  +  A          ++ A   VV            +       V          
Sbjct: 49  WDGH--LATAAPLVTGEAGAERLAAAEVVVRSPGVPNTHPWLAELRRRQVPVTQG--TAL 104

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A  + +TGS GK+TT  +++  L+++ +     G+             +P   D
Sbjct: 105 WLADHAARTVGVTGSKGKSTTSSLISHLLAAVDRPNVFGGNIGVP------TLELPA-AD 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL      ++        P +AV+T + P HL    G  E    K  +     +  
Sbjct: 158 LYVLELSSYQCSDL-----TDSPRVAVVTALFPEHLDAHGGEREYYRDKLNLLAHGPE-- 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKS 280
           TI +N  D         +  LG + +   G                + + W  +  Q   
Sbjct: 211 TIVVNGADPRL------AAELGDRPVVRAGTPDT-----TYVAGGPDGTPWFHLGDQPLF 259

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQ 336
              V   +G H   N+ + L ++ +L  DV    DT   A++ F    G   R    ++ 
Sbjct: 260 PRAVLPLVGRHNEGNLCVALSVLDVLGVDVRARRDTVAVAVAEFQ---GLAHRLTEIVDP 316

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T +D++   +P +   AI          +GR + V+    + G         LAE  
Sbjct: 317 SGLTFVDDTLATSPYAAMHAIDA-------YDGRALTVIVGGADRGLDYTPLREHLAE-- 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  V  SG  ++A  D LP+ +    ++ + G     +     G VV++
Sbjct: 368 REITVIGVPDSGSRIVAALDGLPK-VRCEVTDDLVGAVRLARRVTPAGGVVLL 419


>gi|92116833|ref|YP_576562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           hamburgensis X14]
 gi|118595668|sp|Q1QNU5|MURD_NITHX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91799727|gb|ABE62102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           hamburgensis X14]
          Length = 466

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 94/272 (34%), Gaps = 18/272 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR    A  +AITG+ GK+TT  ++   +          G+    I         P    
Sbjct: 108 ARHAPDAPFVAITGTNGKSTTTALVAHLMREAGHDVQMGGNIGTAILS----LEPPRKGR 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    +     LT  + P + ++  ++P HL     IE  A+ K  +   ++  G
Sbjct: 164 VHVIEMSSYQID----LTPSLDPTVGILLNVSPDHLDRHGTIEHYAAVKERLIAAVQPHG 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQG 278
           T  +  DD +      +    G + +    K   AD       +  + S  +  E+   G
Sbjct: 220 TAVVGVDDIWSRTAADRIEQAGKRVVRVSVKRPLADGISVDHDRIVRASGGAQAEIADIG 279

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +    G H AQN          L    D   + L  F    G   R      +  
Sbjct: 280 G----IGSLRGRHNAQNAACASAAALALGVGRDILQQDLRSF---PGLAHRMEQVGRKAN 332

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              +++S   N  + + A+S  ++I     G+
Sbjct: 333 VLFVNDSKGTNADATEKALSSFAEIFWIAGGK 364


>gi|114330666|ref|YP_746888.1| UDP-N-acetylmuramate [Nitrosomonas eutropha C91]
 gi|114307680|gb|ABI58923.1| UDP-N-acetylmuramate [Nitrosomonas eutropha C91]
          Length = 460

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 137/388 (35%), Gaps = 45/388 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  L     ++A+ G+ GKTTT  ML   L          IG    + G+   L  + 
Sbjct: 94  WLAQHLLHNRWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFLIGGVPENFGLSARLGHID 153

Query: 158 VDVD---FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +     F + E            +  V  +P  AV+  +   H   F  +  I      
Sbjct: 154 GEQTLSPFFVIEADEYDTAFFDKRSKFVHYQPKTAVLNNLEFDHADIFPDLAAIERQFHH 213

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SW 271
           +   + + G I +N  D   + +    H      +  FG  +        W+  +E    
Sbjct: 214 LVRIVPRNGLIIVNGCDETLQRVL---HQGCWTPVEKFGVDEG-------WQITTEHDQS 263

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++ QG+   ++H   +G H   N L  L             I+ALS F   +   +R 
Sbjct: 264 QSIRFQGEPQGILHWELLGEHNRMNALAALAAARHAGVPAPLGIEALSHFKNVK---RRM 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQ 386
                     + D+ +  +P +++  ++ L      G  R +AVL      M  +G    
Sbjct: 321 ELRGIIHDIHIYDD-FAHHPTAIQTTLAGLR--DKIGSARILAVLEPRSNTMK-LGVWQD 376

Query: 387 SFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           S         SL     V+      G+ V +   +L     +H+   +  +   I ++  
Sbjct: 377 SL------AASLNQADQVFCYAHQMGWDVASALTSLSNKADIHH--DLSAMISAITTAAQ 428

Query: 443 DGDVVVVKSSNSC--GFY-RLINLLLEE 467
            GD +++  SN    G Y +L++ L  +
Sbjct: 429 PGDHILIM-SNGSFNGLYDKLLDALRNQ 455


>gi|146310084|ref|YP_001175158.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
 gi|145316960|gb|ABP59107.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
          Length = 457

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 140/419 (33%), Gaps = 44/419 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 64  LVIIGNAMTRGNPCVEAVLERNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 124 ILEACGYKPGFVIGGVPGNFDVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 180 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQE 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +  +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 240 LV-----GEQGHWHAK--KLTTDASEWEVLLDGEKVGQVKWALVGEHNMHNGLMAIAAAR 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 293 HVGVTPADAADALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 347

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALK 415
             G  R +AVL      M  MG         L           V+L       + V  + 
Sbjct: 348 VGGTARILAVLEPRSNTMK-MGLSKDDLAPSLGR------ADEVFLLQPQHIPWQVAEVA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPA 470
           DA  +    H+   +D L   +  +   GD ++V  SN  GF     +L++ L ++  A
Sbjct: 401 DACIQ--PAHWHADVDTLADMVIKTAQPGDHILVM-SNG-GFGGIHQKLLDGLAKKAQA 455


>gi|222112151|ref|YP_002554415.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Acidovorax
           ebreus TPSY]
 gi|221731595|gb|ACM34415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax ebreus
           TPSY]
          Length = 632

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 139/434 (32%), Gaps = 61/434 (14%)

Query: 55  DFILHAVQ----KGAGLVVVNTDMVASIGSLSIPVFGVD----DVLGALNKLAVAARL-- 104
           +FI  A      +G  L  V      S   ++  V         V G L   A A R   
Sbjct: 181 EFIAGAFDETLVRGRALHAVYRSPGLSPNEIAPVVIAARARQISVEGELGLYAQALRELR 240

Query: 105 ---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
                   ++AITG+ GKTT   +  + +    K  A  G+    +   L    +     
Sbjct: 241 AGQGYAPAVLAITGTNGKTTVTSLTGLLVECADKRVAVAGNIGPTLLDTL-AQHIDAGTL 299

Query: 161 -DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  + EL    L  ++       P  A +  I   HL     ++  A AK  IF    +
Sbjct: 300 PEVWVLELSSFQLDGVQ----GFEPTAAAVLNITQDHLDWHGSLQAYAQAKGRIF---GE 352

Query: 220 TGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADF------------- 258
           TG + LN +D+    L     + K     ++   +FG     +  DF             
Sbjct: 353 TGLMVLNREDAEVMALLPPPVRVKLQKPQLRAHVTFGGDMPQRPGDFGIEVVSGMAWLVR 412

Query: 259 --QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +  +  +  +    E+ +Q           G H A N L  L +       +   +  
Sbjct: 413 AHEADETAKRGKAQDAELHIQRLMPADALRIRGRHNAINALAALALAQAAGCPLAPMLYG 472

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                   G   R             D+S   N  +  AA++ L       + R + +LG
Sbjct: 473 ---LREYRGEPHRVEPVGIVREVEYFDDSKGTNVGATVAALTGLGA-----DRRLVVILG 524

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL 435
              +  + S      LA  ++ Y    V L G     ++ AL    + +  + T+     
Sbjct: 525 GDGKGQDFSP-----LAAPVARY-ARAVVLIGRDAPQIRAALQGCGVPLQDAATLPEAVQ 578

Query: 436 FIQSSLVDGDVVVV 449
                   GD V++
Sbjct: 579 LATQRAHVGDAVLL 592


>gi|217967635|ref|YP_002353141.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336734|gb|ACK42527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 456

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 128/356 (35%), Gaps = 43/356 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   +K  IIAITG+ GK+TT  ++   L +        G+        +   +      
Sbjct: 104 AYWYAKVPIIAITGTKGKSTTTTLIGEILKNAGIPNIVAGNIGLPFISVVKDLK----EG 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+    L +I       RP I++   I P HL  +S ++E   AK+ IF   ++  
Sbjct: 160 YFVLEVSSFQLEDIEKF----RPFISLFINIYPDHLDRYSSMDEYMLAKSRIFMNQKEED 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L+YD    E++         K  + F K +N       + +   + + ++  +  S+
Sbjct: 216 YAILSYDQE--EIINLAKPYKVKKLFFGFKKHENDGIF---YDESRNKVFYKLSERYGSL 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +        +  N + +  +  +L  +     K    F       +R            
Sbjct: 271 TIPKGIWNRILISNFMASALVGLLLGVEERVIEKTGEDFQGIPFALQRI---GELNGRVF 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEV 395
           +++S   NP S  +AI+ ++          I +LG      D  E+ E            
Sbjct: 328 VNDSKATNPVSTSSAINSINS-------PIILILGGRNKNFDFHELFEN----------- 369

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
           +    +  V L G     +++ L     + Y   ++++            GDV+++
Sbjct: 370 IKKSKVRRVVLIGETKEIMRE-LSEEYEIPYVIADSLEDAVRRAYEVSEPGDVILL 424


>gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum ATCC 824]
 gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           acetobutylicum ATCC 824]
          Length = 462

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 125/381 (32%), Gaps = 57/381 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  +TGS GKTTT  ++   L          G+    +   +        V   + E
Sbjct: 117 PAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGTPLFSKIKEVSTKDKV---VLE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I      V P +AV+T ++P HL     +EE  +AK  IF    K   + +N
Sbjct: 174 LSSFQLMTID-----VSPEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKGNVLIIN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+     +++++    +K    F +++         KQ       E ++  K       
Sbjct: 229 RDNEITNNMESEALGDLLK----FSRNEKVKNGAYYNKQDGNIYLFENKICNKD---DIK 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N +     VS      ++ IK    F   E    R             ++S 
Sbjct: 282 IKGMDNVKNFMAAFCAVSK-DVSKESMIKVAMNFAGVE---HRREFVRELDGVKYYNDSI 337

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--- 403
            ++P    + ++         E   I + G            HI   E L+         
Sbjct: 338 ASSPTRTISGLNA-------YERPVILIAGGY--------DKHIPF-EPLAEKGYDKIKV 381

Query: 404 VWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
           + L G     +K+   +        + +  S+ ++      +    +GD+V +    +S 
Sbjct: 382 LILMGATKNKIKETFDKVICEKNIKLPIILSDNLEEAVCEAKKVATNGDIVTLSPACASF 441

Query: 453 --------NSCGFYRLINLLL 465
                       F  ++N L 
Sbjct: 442 DSFPNFEVRGNKFKEIVNNLK 462


>gi|87123322|ref|ZP_01079173.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. RS9917]
 gi|86169042|gb|EAQ70298.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. RS9917]
          Length = 483

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 150/422 (35%), Gaps = 49/422 (11%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A      LVVV+T +  S   L   V      L   ++  + A L ++   IA+ GS GK
Sbjct: 70  AGSASPPLVVVSTAIPESNPEL---VEARARGLSIWHRSDILAALIAEQPAIAVAGSHGK 126

Query: 120 TTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           TTT  ++T  L++  +   A IG      G             + + E   S    ++F 
Sbjct: 127 TTTSTVITTLLAAAGEDPTAVIGGVVPCYGSNG----HAGSGRYLVAEADESDGSLVKFQ 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L      V+T +   H  ++SG++++ +       G E+   +  N DD         
Sbjct: 183 AEL-----GVLTNLELDHTDHYSGLDDLVATLQRFASGCER---LLANQDDPILRDHFQA 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
           +    ++        +  DF     +   +++  +    G  +  +     G H   N+ 
Sbjct: 235 TAWWSVQRC------EGVDFAALPVRLDGDRTVADFYEDGGLVGRITLPLPGLHNLSNVT 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +   +     + L         G+R+    +     ++D+ Y  +P+ + A +
Sbjct: 289 GALAACRLAGVEFSRLQRGLEQLQAP---GRRFDFRGDWQGRQIVDD-YAHHPSEVSATL 344

Query: 358 SVLSQIS-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLS 407
           ++   +        P    R   V          +Q F    A  L++ ++     V+ +
Sbjct: 345 TMARLMVSSGRSPLPRQPQRLTVVF--QPHRYSRTQEFLDQFAAALTVADLVLLAPVYSA 402

Query: 408 GFHVLA--LKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-F 457
           G   +A     AL  S+        V  +++MD L + +Q      D+V+   +      
Sbjct: 403 GEAPIAEVSSHALAGSMRHLAPEQAVLVADSMDELTVLVQEHSRPDDLVLAMGAGDVNSL 462

Query: 458 YR 459
           ++
Sbjct: 463 WK 464


>gi|224498514|ref|ZP_03666863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes Finland 1988]
          Length = 455

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|228473309|ref|ZP_04058063.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275211|gb|EEK14009.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 450

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 130/387 (33%), Gaps = 54/387 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   +   +  +A+ G+ GKTTT  +L   L   K    A +G    +         
Sbjct: 95  RSEVLGLITEDSFCLAVAGTHGKTTTSSILAHILVECKAPVSAFLGGICENFQSNF---- 150

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    +  + E        +R     + P IA IT +   HL  +   EE      +   
Sbjct: 151 ICKGTELTVVEADEFDRSFLR-----LSPSIACITAVDADHLDIYGTAEEFQKGFEDFTH 205

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L+  G + +     F  L              ++G +  +D+++ + +  +      + 
Sbjct: 206 RLKPGGKLIVRRGLPFAGL--------------TYGIADGSDYEISQVRIQNGGYLFTLS 251

Query: 276 LQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                     +  +      G H   N L  + +       +    +AL+ F   +G  +
Sbjct: 252 YTDPKTGNREEVKDCTLFRPGEHHLLNALAAVAVAHQAGYPLADLARALASF---KGVRR 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELS 385
           R+   +N      ID+ Y  +P  + A  + +  + P+ E   I +L          + +
Sbjct: 309 RFSYIINTPEQVFIDD-YAHHPTELNALYNGVRTMYPNEE---ITILFQPHLFTRTRDFA 364

Query: 386 QSFHIDLAE-----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             F   LA+     +L +Y    + + G     L + +     +      D +  ++QS 
Sbjct: 365 DGFAQSLAQFDRVVLLDIYPARELPIEGITSQWLLNKIDNPNKILVP--KDNIINYLQSH 422

Query: 441 LVDGDVVVVK-SSNSCGFYRLINLLLE 466
                 V+V   +   G    +  + +
Sbjct: 423 PSR---VLVLAGAGDIGVE--VEKIKK 444


>gi|319791816|ref|YP_004153456.1| cyanophycin synthetase [Variovorax paradoxus EPS]
 gi|315594279|gb|ADU35345.1| cyanophycin synthetase [Variovorax paradoxus EPS]
          Length = 855

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 135/394 (34%), Gaps = 60/394 (15%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---- 155
            A     +  ++A+TG+ GKTTT  ++   L+S         +   ++    T +     
Sbjct: 461 FAHGDDGRIPVVAVTGTNGKTTTARLINHLLASSGLRTGMTNTDGVYVDGRQTDSGDCSG 520

Query: 156 --------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIE 204
                   M  DVD  +FE+     G +R      R  +AV+T I    HL     + +E
Sbjct: 521 PKSARNVLMHPDVDAAVFEVA--RGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYITTVE 578

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           ++A  K  I   +   G   LN  D     + A         +  F   +          
Sbjct: 579 DLAVLKRVIVRNVAADGYAVLNAADVNVAAMAAGCPG----HVIFFTADRMHPVMATHRA 634

Query: 265 QC-------------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           Q              +E SW E ++  + + +  +G       N++ ++     +  D D
Sbjct: 635 QGKRTVYVDQDTLVAAEGSWRE-RIPLRDVPITRNGTIGFQVDNVMASVAAAWAVGLDWD 693

Query: 312 TAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           T    L+ F +   G   R+     +G   + D  Y  N  +M+A +S +  +  +   R
Sbjct: 694 TIRSGLASFMNDAAGVPGRFNVMDYRGATVIAD--YGHNTDAMRALVSAVDTMPANK--R 749

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR 420
            + + G     G+   S   D   +L       V L           G  +  L+  L  
Sbjct: 750 SVVISG----AGDRRDSDIRDQTAILGEA-FDDVILYQDAAQRGRADGEVMALLRQGLQG 804

Query: 421 SIHVHYSETMDG---LFLFIQSSLVDGD--VVVV 449
           +      + + G         + L  GD  +++V
Sbjct: 805 AGRTRQIDEIRGEFVAIDTALARLQPGDLSLILV 838


>gi|71279807|ref|YP_267163.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Colwellia psychrerythraea 34H]
 gi|71145547|gb|AAZ26020.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Colwellia psychrerythraea 34H]
          Length = 479

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 153/432 (35%), Gaps = 54/432 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G    +V   +  +I   S P + +++VL                 ++A++G+
Sbjct: 72  VGNAMSRG--NPMVEYMLDRNIPYTSGPQWLLENVLK-------------DRWVLAVSGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L      +   G     +    + +    D  F + E          
Sbjct: 117 HGKTTTSSMLAWILEYA---HMSPGFLIGGVPQNFSSSARLGDTPFFVIEADEYDSAFFD 173

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V  RP   VI  +   H   F+ + +I      +   +   G I    ++     
Sbjct: 174 KRSKFVHYRPRTLVINNLEFDHGDIFNDLSDIQKQFHHLIRMVPSNGLILSPANEEAI-- 231

Query: 235 LKAKSHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
              ++ A+G  T   F      + + +D   +  K  ++ S   V+  GK   VV    I
Sbjct: 232 --TETLAMGCWTPTEFSNGELQQDEPSDAGWQVEKLNAQGSEFIVKFNGKEQGVVKWDLI 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N +M +            +I+AL+ F   +   +R+         ++ D+ +  
Sbjct: 290 GDFNIDNAVMAIAAARHAGVPSAVSIEALAEFINTK---RRFELRGIVNNISVYDD-FAH 345

Query: 349 NPASMKAAISVLS------QISPHGEGRRIAVLGDM---CEMGELSQSFHIDLAEVLSLY 399
           +P ++   ++ +       +      GR  AVL         G   +S    L +     
Sbjct: 346 HPTAIAKTLAGVRAKLSQQESEQEQVGRIFAVLEPRSNTMRSGVHKESLPKSLID----- 400

Query: 400 NISHVWLS-GFHVL-ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               V++  G  V  ++ D + +        + ++ L   I      GD++VV  SN  G
Sbjct: 401 -ADQVFIYQGEQVTWSVSDLIKQCKPACQVEDNVERLVESIAQQAQAGDIIVVM-SNG-G 457

Query: 457 FYRLINLLLEEF 468
           F  + N LL   
Sbjct: 458 FADIHNKLLNRL 469


>gi|331090611|ref|ZP_08339462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401051|gb|EGG80646.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 451

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 121/376 (32%), Gaps = 50/376 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITG+ GKTTT  +L   + + K +   +G+         ++A    +    + E
Sbjct: 108 GGDVLAITGTNGKTTTTALLGEIMKAWKDSVYVVGNIGTPYT---SIAAETREDSVIVAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP ++ I  I P HL     +     AK  I +         LN
Sbjct: 165 ISSFQL----ETVDAFRPKVSAILNITPDHLDRHHTMRAYIEAKETIAKNQTAEDVCVLN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRK--WKQCSEQSWMEVQLQGKSME 282
           Y+D        K+ A    T+  F   +  D    L           +   +    +   
Sbjct: 221 YEDEETRKFGEKTEA----TVLYFSSRRKLDRGVYLEDGTIIYAENGNRTTICHVDE--- 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N++  + +       VD   +++  F   E    R      +      
Sbjct: 274 --LKLLGVHNYENIMAAVAMSLAYHVPVDIIRQSVKAFGGVE---HRIEYVCEKNGVVYY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +   AIS + + +    G            G    + + +  E      + 
Sbjct: 329 NDSKGTNPDAAIKAISAMKKPTYLIGG------------GYDKNASYEEWIESFDG-KVQ 375

Query: 403 HVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
            + L G     +++   R         ET++           +G+ V++    +S     
Sbjct: 376 KLVLIGQTKEKIEETAKRCGFTDTVLAETLEEAVSICAELSREGEAVLLSPACASWGMFK 435

Query: 453 ----NSCGFYRLINLL 464
                   F  L+N L
Sbjct: 436 NYEERGDKFKELVNAL 451


>gi|300813520|ref|ZP_07093855.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512366|gb|EFK39531.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 286

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 114/293 (38%), Gaps = 24/293 (8%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  ++   + E+  S    +R   + +   I     ++  H+      E     K++I  
Sbjct: 2   LDKNISHVVMEVSSSAQQMLR--VNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIIL 59

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWM-- 272
             +K     LN D+     LK K+ A    ++ +F     ++DF + K    +       
Sbjct: 60  NAKKGSFALLNMDNEHIASLKEKTKA----SVLTFSMENLDSDFGISKLDLSTGFGKFMF 115

Query: 273 -------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                  E+ L+ +S EV    +GY    N ++ + +  IL  D +  + AL  F   E 
Sbjct: 116 HVNRDIKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALKNFKGVE- 174

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +R+    ++ F  L  + + AN  ++   ++ LSQ+S        A+ G+     EL+
Sbjct: 175 --RRFELIYDEKFKVL--DDHFANEKNIDVTMTTLSQMSYKNLHILYAIRGNRG--IELN 228

Query: 386 QSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           ++    L   L     S ++       +  KD + +     Y+E +  + L +
Sbjct: 229 RAVDERLCFWLKKLKASTLFTTFSEDTVKQKDKVTQDEKAVYAEVLKIIILKL 281


>gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 514

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/501 (15%), Positives = 163/501 (32%), Gaps = 77/501 (15%)

Query: 6   TFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  ++L  ++ H + +             ++ +S+ ++    FF           ++  A
Sbjct: 8   TVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFCKGNFRE---AYLADA 64

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            Q+GA   V          +++IP   V ++  +++ L+ A     ++    IA TG+ G
Sbjct: 65  QQRGASGYVSEKQYH----NVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLPTIAYTGTKG 120

Query: 119 KTTTKEMLTIALSSIK-KTYACIGSYNN------------HIGVPLTL---ARMPVDVD- 161
           KTT+       L  +  +  A   + N              +  P +L     M   V  
Sbjct: 121 KTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQN 180

Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEG 216
                I E+      + R   + +R  + V   I+P H+         +    K ++   
Sbjct: 181 NMTHLIMEVSSQAYKKQR--VYNLRYDVGVFLNISPDHIGRNEHPTFADYLHCKEQL--- 235

Query: 217 LEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNA-------DFQLRKWKQCSE 268
           L  +    +N D D   ++          + I+ + +  +        DF+ +       
Sbjct: 236 LVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLS 295

Query: 269 QSWMEV-------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           ++ +++       +  G          G +   N +      +++ A        LS   
Sbjct: 296 ENKIQLISVSDKAKQLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGLSH-T 354

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR + Y    +      I   Y  N  S+ + +  L + SP  +G  I + G     
Sbjct: 355 TVPGRMEIYSTKQHG----TIYVDYAHNYGSLHSVLDFLKKQSP--DGNVIVITGS---T 405

Query: 382 GELSQSFHIDLAEVLSL-YNISHVWLSG---FHVLALKDAL-----PRSIHVHYSETMDG 432
           G+        L + ++   N++++            + D +     P  +   Y      
Sbjct: 406 GDKGIDRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAYIDPARVKTSYIADRTS 465

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
                      GD+VVV  K 
Sbjct: 466 AIQKAVLESKQGDLVVVAGKG 486


>gi|23098924|ref|NP_692390.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Oceanobacillus iheyensis HTE831]
 gi|30316035|sp|Q8ER50|MURD_OCEIH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22777152|dbj|BAC13425.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oceanobacillus
           iheyensis HTE831]
          Length = 449

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 134/388 (34%), Gaps = 67/388 (17%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V       IPV    +++  L          +   +I ITGS GKTTT  ++T  L    
Sbjct: 88  VEEAQRRGIPVISEVELVHYL----------TNQPVIGITGSNGKTTTTTLITEMLDRSN 137

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            +    G+      V   +A      +  + EL    L  I  L    +   AV+  +  
Sbjct: 138 VSVKVAGNIGV---VATEVASSLQSDEKMVMELSSFQLQGIDQL----QFSTAVLLNLFE 190

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL      E    AK  IF+   K   +  N DD         + A  +     F  S 
Sbjct: 191 AHLDYHGSFENYVEAKCNIFKSQNKHDYLIYNADDDNVSAAIKTAEATKVP----FSSS- 245

Query: 255 NADFQLRKWKQCSEQSWME---VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTAD 309
                    +  ++ +WM+   +  + + +  +     +G H  +N+L  +    +  A 
Sbjct: 246 ---------RPLADGAWMDDDFLYYKDEKIIAIRDIVLVGKHNMENILAAIATAKLNGAT 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  ++ L+ F   +    R           + ++S   N  + K A++  +        
Sbjct: 297 NEGIVQVLTTFSGVK---HRLEFVGVINGRYIYNDSKATNILATKKALAAFN-------- 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--------LPRS 421
           + + +L    + G   +        +  L+++  + + G     LKDA        + ++
Sbjct: 346 KNVVLLAGGLDRGNTFEEL------IPYLHHVKAMVVFGETAGKLKDAGVAANIPVIEKA 399

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + V ++  +            + D +++
Sbjct: 400 LDVQHAVEVAFALTD------EQDTILL 421


>gi|326569002|gb|EGE19071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC1]
 gi|326569302|gb|EGE19363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC7]
 gi|326571978|gb|EGE21983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC8]
          Length = 460

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 122/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  +    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPANTPSLETTLDKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V+ A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHIGVSVEMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLAPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L   LK+A+  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N   F     RL++ L
Sbjct: 443 NG-DFENIHGRLLDAL 457


>gi|254827076|ref|ZP_05231763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
 gi|258599459|gb|EEW12784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
          Length = 455

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +   ++ +  Q        E    
Sbjct: 211 IQKNQTTDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLNQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|315304090|ref|ZP_07874491.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
 gi|313627531|gb|EFR96263.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
          Length = 461

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 92/298 (30%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A           EL    L       +  RPHI+VIT I  AHL   +   E   AK  
Sbjct: 161 VAENATSEQHISMELSSFQLMG----VNTFRPHISVITNIYEAHLDYHTDRSEYVQAKWH 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +   +   + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 217 IQKNQTEDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFDDEVIGA 276

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 277 R---------DRILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + + A+              + +L    + G          
Sbjct: 325 VVEWQGRKFYNDSKATNILATQXALKGFKN--------PVILLAGGLDRGNSFDEL---- 372

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I V+Y + ++            GD++++
Sbjct: 373 --LPFFKNVKALIVFGETADKIGRVGKIAGIEVYYVDNVEAAVPVAYKESAPGDIILL 428


>gi|310659201|ref|YP_003936922.1| UDP-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Clostridium
           sticklandii DSM 519]
 gi|308825979|emb|CBH22017.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Clostridium
           sticklandii]
          Length = 446

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 113/334 (33%), Gaps = 52/334 (15%)

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              + K     +G+          ++       F I EL    L  I+      RP I+ 
Sbjct: 125 IFKAYKSDTKVVGNIGYPALEQAVVSDAD---TFLITELSSFQLESIKTF----RPCISA 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  I   HL+    + E   AK  IFE       + LNYDD    L +++        I 
Sbjct: 178 ILNITEDHLNRHKTMSEYMKAKFRIFENQSSDEFLVLNYDDELLRLSQSEIK----PKII 233

Query: 249 SFGKSKNADFQLRKWKQCSEQSWME----VQLQGKSMEVV-----HHGIGYHMAQNMLMT 299
            F + +             E  ++E    V   G + E +        +G H  +N+L  
Sbjct: 234 YFSRRE----------ILKEGIFVENEQIVACIGNTKEYIMDVKDILLLGQHNLENVLAA 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I  +   D     + +  F   E    R            I++S   NP S   A+  
Sbjct: 284 VSIAVLAGIDKSIIKQEVMNFRGVE---HRLELVRTYNDVNYINDSKATNPDSSIKALEA 340

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-AL 418
           ++          I + G M       QS +    +      + H+ L G     ++  A+
Sbjct: 341 MNT-------PVILIAGGM-----DKQSDYSSFIDSCIP-KVKHLILLGETKDVIEKTAI 387

Query: 419 PRSI-HVHYSETMDGL--FLFIQSSLVDGDVVVV 449
            + + ++   E M       F+++   +GD V++
Sbjct: 388 SKGLGNITKVEDMKQAVDVAFLKA--KEGDTVLL 419


>gi|254434589|ref|ZP_05048097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Nitrosococcus oceani AFC27]
 gi|207090922|gb|EDZ68193.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Nitrosococcus oceani AFC27]
          Length = 448

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 128/371 (34%), Gaps = 34/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTT   +L   L          IG    + G    L R P    + + E  
Sbjct: 93  VLAVAGTHGKTTASSLLAWILEYAGHGPGYLIGGVPQNFGASARLGRSP----YFVVEAD 148

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  RP   ++  +   H   F  +E I      +   +   G I + 
Sbjct: 149 EYDTAFFDKRSKFIHYRPRTLILNNLEYDHADIFPHLEAIQQQFHYLVRTVPNNGLILVP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
             D   + L           + + G +      L       + S  EV  +      VH 
Sbjct: 209 SGD---KALATVLSMGCWTPVVNMGIAGGVGSALAARAVADDGSNFEVWYENSCQGQVHW 265

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G+H   N L  +G        +    +AL  F    G  +R          T+ D+ 
Sbjct: 266 PLLGHHNVANGLAAIGAARHAGVPIGQGCQALERFQ---GVRRRLEVCGKVNGVTVYDD- 321

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++   ++ L   +  G+ R IAVL    E    +     H D LA  L+L    
Sbjct: 322 FAHHPTAISKTLAGLR--ARVGKARIIAVL----EPRSNTMKLGVHKDSLAPALAL--AD 373

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V +         ++ +  AL  +    + + +  +   +++ +  GD +V+  SN   F
Sbjct: 374 RVLIYQPSDIKWSLIPIVHALGPNKASAFFD-IQAIVDNLRTYVQGGDHIVLM-SNG-NF 430

Query: 458 YRLINLLLEEF 468
             +   LL+  
Sbjct: 431 SHIQQQLLKAL 441


>gi|74318590|ref|YP_316330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thiobacillus denitrificans ATCC 25259]
 gi|74058085|gb|AAZ98525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 466

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 121/358 (33%), Gaps = 36/358 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+ G+ GKTTT  ML   L   +      G     I     L+    D  F + E
Sbjct: 102 DKWVLAVAGTHGKTTTSAMLAWILEDARLH---PGFLVGGIPQNFGLSARLTDSPFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  I+ I +    +   +   G I 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDIQAIETQFHHLVRTIPGNGLIV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            N  ++  + +  +     ++   S G   +  AD         S        LQG+   
Sbjct: 219 ANGREAALDRVLERGLWTPVERFGSIGGWTAGEAD------ASGSFDVHFNSALQGR--- 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG H   N L  +            AI ALS F   +   +R          T+ 
Sbjct: 270 VRWELIGEHNRMNALAAIAAARHAGVPAAAAIDALSRFENVK---RRMEIRGAVHGITVY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSL 398
           D+ +  +P ++   +  L   +  G  R +AVL      M  +G +  +         SL
Sbjct: 327 DD-FAHHPTAITTTVQGLR--AKVGNARILAVLEPRSNTMK-LGVMKDAL------PASL 376

Query: 399 YNISHVWLSGFHV--LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                V+  G ++   A +   P        + +D L   + +    GD V++  SN 
Sbjct: 377 AGADEVYCYGANLGWDAAEALAPLGEKARVFDNLDKLVAQLVADGRPGDHVLMM-SNG 433


>gi|313607758|gb|EFR83975.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria
           monocytogenes FSL F2-208]
          Length = 461

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 161 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 217 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 276

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 277 R---------DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 325 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 372

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 373 --LPFFKNVKTLIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
 gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
          Length = 456

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 31/373 (8%)

Query: 80  SLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           SL IP+       G  +      A   SK+ I+A+TG+ GKTTT  +LT  L    K   
Sbjct: 79  SLDIPIVKAAQARGIDVVSEVELAYEVSKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVH 138

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+  + +     +A       F + EL    L  I++     RP  A++  I P HL+
Sbjct: 139 VGGNIGDSLSE---VAYSMPAGGFLVAELSSYQLETIKYF----RPIGAIMLNITPDHLA 191

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E   +AK  IFE    T  + LN DD     ++ ++ +  +K          A +
Sbjct: 192 RHKTMENYIAAKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGA-Y 250

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   ++    +  +  + +    H  G H  +N+L  + +   L   V+T  + +S
Sbjct: 251 YADGQCYIAKDGVAKFVIADEDI----HIPGSHNIENILTVIALSHALGVPVETIHRIIS 306

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            FH  E R +R +        T  ++S   N  S+  A+    Q       + I + G  
Sbjct: 307 EFHGVEHRLERVKTI---DGITFYNDSKATNVDSVVKALESFDQ-------QVILLAGGH 356

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLF 436
            +M  L           L       V   G      + A   +    ++ + +M      
Sbjct: 357 DKMTPLEDFM------ELVKEKTKAVIFMGEAADRFETAAKEAGVKLIYRALSMKEAVGQ 410

Query: 437 IQSSLVDGDVVVV 449
                  GD+V++
Sbjct: 411 GYKLAETGDIVLL 423


>gi|209520749|ref|ZP_03269496.1| UDP-N-acetylmuramate [Burkholderia sp. H160]
 gi|209498797|gb|EDZ98905.1| UDP-N-acetylmuramate [Burkholderia sp. H160]
          Length = 464

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 126/357 (35%), Gaps = 29/357 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   + + G +  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRLGRVVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             +   E +  +        +  FG     + Q  +     ++    V   G+ + VV  
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWEIQPAEQGVPVDE-RFAVYHNGERVGVVDW 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  +     +      A K+LS F   +   +R     +    T+ D+ 
Sbjct: 278 QVQGEHNRMNALAAIAAARHVGVPPAQAAKSLSGFRNVK---RRMEVRGSVDGVTVYDD- 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHV 404
           +  +P +++  ++ L         R +AVL    E    +    +  A++  SL +   V
Sbjct: 334 FAHHPTAIETTVAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  G           L +AL P        + +D L   +  +   GD ++V  SN 
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLDGKAQAFDNLDALVKAVVHAARPGDQILVM-SNG 445


>gi|313901115|ref|ZP_07834603.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
 gi|312954073|gb|EFR35753.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
          Length = 434

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 107/319 (33%), Gaps = 34/319 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D +           L  + T I++ G+ GKTTT  ML+  +S    T   IG        
Sbjct: 83  DTVKTYWYHEFLGSLAKEYTSISVAGTHGKTTTTGMLSHVMSLAAPTGYLIGDG------ 136

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 MP D  + + E        + +     +P  A+IT I   H+  +  +E+   A
Sbjct: 137 ---TGEMPKDSRYFVLESCEYQRHFLAY-----KPEYAIITNIELDHVDYYKDMEDYCDA 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                  ++K   + L  DD+    L  K+  L       +G   + D Q    KQ  + 
Sbjct: 189 FEAFANQIQKG--VVLFGDDAAVRSLHVKTEHL------YYGLKDHNDVQAVHVKQHEDG 240

Query: 270 SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +V  + K         +G  +  N L  + I  +     +   +         G  +
Sbjct: 241 MQFDVLYRKKLFAHFDLPFVGKPLLWNSLGVIAIGIMEGLSGELLQEG---LQSFPGVKR 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+    N     +  + Y  +P ++K  I           G+++  L        +   F
Sbjct: 298 RFTIEENGDNVYI--DDYAHHPTAVKYMIEA---ARIKYPGKKVIALFKPDRYSRIYY-F 351

Query: 389 HIDLAEVLSLYNISHVWLS 407
               AE L+      V+L 
Sbjct: 352 MDRFAEELNQ--ADEVYLC 368


>gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 457

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 127/351 (36%), Gaps = 36/351 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++++TGS GKTTT  ++   L +   ++    + N  +    T   +  D D
Sbjct: 106 GYEIFSGHLVSVTGSNGKTTTTTLIQKMLDA-GLSHIAKYAGNIGVSFTKTAQELSAD-D 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T  + PHIAVIT I   HL      E   +AK  I     K  
Sbjct: 164 YLVTELSSFQLLG----TPDLHPHIAVITNIFANHLDYHKTRENYINAKLNITRNQTKDD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ +  +S A  I      GKSK+  +               +  +G+ +
Sbjct: 220 YLIMNWDRDEWQEIARRSSA-TIVPFSRLGKSKDGAYVEDGV----------IYWRGEKV 268

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG    +N L  +    +   D +  I  L+ F    G   R +  ++    
Sbjct: 269 MPTKDIRLIGPQNVENALAAIAAAKLSGVDNEAIINVLTTFG---GVRHRLQYVMDYQGR 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + +  + + A+    Q         + +L    + G   +             
Sbjct: 326 RFYNDSKSTDIEATEVALQGFEQ--------PVILLAGGLDRGYTFERLVPYF-----KK 372

Query: 400 NISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + + G     +KDA  +++  V+ SE               GDV+++
Sbjct: 373 HVKALIVFGECKDKMKDAGEQAVLPVYESENAVTAVPEAWKLSEPGDVILL 423


>gi|295698678|ref|YP_003603333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
           pediculicola USDA]
 gi|291157135|gb|ADD79580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
           pediculicola USDA]
          Length = 439

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 129/346 (37%), Gaps = 40/346 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                II+ITGS GK+TT  +LT             G+    +     L  +  D D  I
Sbjct: 104 DRDKKIISITGSNGKSTTASVLTEIAKKANLKVGLGGNIGVPV-----LELLNYDYDIYI 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223
            EL    L     +T  ++   AVI  I+  H+  +  G+ +  SAK +I++  +     
Sbjct: 159 LELSSFQL----EITSTLKSIGAVILNISENHMDRYPFGMYQYLSAKLKIYDFAKN---C 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D+     +     +  +   SFG +   D++L   K        E   +      
Sbjct: 212 VINIMDN-----RIWPKEIDKRNFLSFGINSG-DYRLNTKKNTI--QRFE---KDLIHIK 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H   N L TL +  I+   ++ ++  +S +    G   R +    +     I+
Sbjct: 261 FIKIIGQHNHMNFLATLCLSEIIGIPINISLFVISRYS---GLPHRLQVVHKKNGVIWIN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S + N  S  AA+  +         +   +LG     G+  +S    L E +S      
Sbjct: 318 DSKSTNIESTIAALKSIKA-----NNKIHLLLG-----GDKRKSKISRLKEFVSYKKKIR 367

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  G   L        SI      T++   L +  +   GD++++
Sbjct: 368 IYCFGKDKLKFGKLRNDSI---VLNTLEQCMLKVSKNTESGDIILL 410


>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 107/332 (32%), Gaps = 37/332 (11%)

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++     +       +G+  N     +    M  D    + EL    L  I     +  
Sbjct: 128 SLVGEIFKAQGVETYVVGNIGNPAIEAV---EMAGDGAVLVTELSSFQLESID----MFS 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  + +  +   HL+    +E  A AKA IFE         LNYDD     +    HA  
Sbjct: 181 PTASTVLNLTEDHLNRHHTMENYAKAKARIFENQVDDTVCILNYDDPITRSMAEDCHA-- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EVVHHGIGYHMAQNMLMT 299
              +  F +      +  +     + + + V  + + +           G H  +N +  
Sbjct: 239 --DVVFFSRKD----KFERGIYLDDDNNIIVNNEIEEIALLKADELSLPGGHNLENCMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G+   L  +++  +K L  F   E    R            +++S   NP S   A+  
Sbjct: 293 IGLTLALGVEIEVLVKVLKTFKAVE---HRLEYVDTVKGVKYVNDSKGTNPDSTIKAVQS 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                   +   I + G   +  + ++ F     E+   Y +  V + G     +++   
Sbjct: 350 -------YKDPIILIAGGYDKGSDFNELF-----EIAKDY-VRSVVILGQTGDLIEETAR 396

Query: 420 RSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449
           +      +    +            + D+V++
Sbjct: 397 KHGFTDLYRVNDLKEAVEKSAQIAKEKDIVLL 428


>gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 448

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++     +  K  A  G+          L 
Sbjct: 96  LSGDIELFARHAKAPVIAITGSNAKSTVTTLVGEMAIAAGKRVAVGGNLGTP-----ALD 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  DV+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDDVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +   DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLN-TPDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      ++S   N   + AA++ +  +    +G+ + + G   +  + S      +A+
Sbjct: 315 EREGVHYYNDSKATN---VGAALAAIEGLGADIDGKLVLIAGGDGKGADFS-GLRAPVAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                      L G     +   L  ++ +   +T+             GD V++
Sbjct: 371 HCRAA-----VLLGRDAELIAQVLGDAVPLVRVDTLQAAVGRSAELARSGDAVLL 420


>gi|227891044|ref|ZP_04008849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867133|gb|EEJ74554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
          Length = 458

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 110/339 (32%), Gaps = 44/339 (12%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IGVP + +A+     D  + EL    L  I        P +AV+T I  AH+      E
Sbjct: 147 NIGVPASQVAQEATSKDTIVTELSSFQLLGITE----YHPKVAVLTNIYEAHIDYHGTRE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              +AK  I     +     +N+D+  ++ L  +S A  I      GKSK+  +    + 
Sbjct: 203 NYVNAKMRIVMNQTEDDYFVVNWDNEEWQELSQRSKA-KIVPFSRLGKSKDGAYVADGYL 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E   M V              G H  +N L  + +  I     +   + L+ F    
Sbjct: 262 FYREDKIMPVD--------DIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFS--- 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +           ++S   N  + + A++  +          + +L    + G  
Sbjct: 311 GVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGFNN--------PVVLLAGGLDRGFT 362

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLV 442
            +     L        +  + + G     +  A   +      +T D             
Sbjct: 363 FEKLEPSL-----KNKVHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSN 417

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
           +GDV+++    +S             F   +  L +E  
Sbjct: 418 EGDVILLSPACASWDQWPTFEVRGDKFIEAVEKLTKELE 456


>gi|187735187|ref|YP_001877299.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
 gi|187425239|gb|ACD04518.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
          Length = 460

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 113/326 (34%), Gaps = 30/326 (9%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            D DF + E            +  +   P + VI  I   H   ++ +EEI  +   + +
Sbjct: 152 TDSDFSVLEGDEYDTAFFDKRSKFLHYLPELVVINNIEFDHADIYNSLEEIKLSFRRLTQ 211

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + + G   +N DD     +   +       + + G S +++ ++   +  ++ S   + 
Sbjct: 212 IIPRNGLALVNADDPNCLDVVKGAPC----PVKTVGFSDSSNIRILDVETSTDGSHFTL- 266

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              +        IG    +N  M +        +V     ++S F   EG  +R      
Sbjct: 267 ---EGTRYYVPMIGEFNIRNAAMAIAAAQFAGLNVKQLADSMSRF---EGVARRQEVKGV 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               +++D+ +  +P ++K AI  L Q  P    R  A+          +  F  +LA  
Sbjct: 321 VNGISVVDD-FAHHPTAIKQAILGLRQRYPE--SRIWAIFEPRSNTTRRNI-FQNELALS 376

Query: 396 LSLYNISHVWLSG-FHVLALKDAL----------PRSIHVHYSETMDGLFLFIQSSLVDG 444
           L+  +   V        +AL++ L                        +   +      G
Sbjct: 377 LATADFPVVAAVDHPDKVALEERLDLTKLSNDLSALGKDALIGGHAQEIVSAVCKKAQPG 436

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFPA 470
           DV++V  SN  GF  +   LLE   A
Sbjct: 437 DVILVM-SNG-GFEGIHAKLLEALNA 460


>gi|3122406|sp|O07669|MURD_ENTHR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2222673|emb|CAA74234.1| murD [Enterococcus hirae]
          Length = 460

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 106/316 (33%), Gaps = 34/316 (10%)

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           T    G+         ++A+     D  + EL    L  I       RPH+AV+T I  A
Sbjct: 146 TARLAGNIGYP---ASSVAQEATADDKIVMELSSFQLMGITDF----RPHVAVVTNIYEA 198

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+      +E   AK  + + + +   + LN++      L  K+ A    T+  F   + 
Sbjct: 199 HIDYHKTRKEYVKAKWHLQQNMTEKDYLILNWNQEELRELSKKTKA----TVLPFATEQ- 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              +L K     + S    Q +   +       G H  +N L  + +  +     +    
Sbjct: 254 ---KLPKGACSLDGSIYYNQEKIMDITE-LGVPGSHNVENALAAISVAKLYGISNEAIKN 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  FH       R +           ++S   N  + K A+S           + + + 
Sbjct: 310 ALHHFHGVP---HRTQYVGEFQGRKFYNDSKATNILATKMALSGFQ------LDQLVLIA 360

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGL 433
           G   + G            + +L  I  +   G     L+DA  ++    +  +E  +  
Sbjct: 361 GG-LDRGNSFDEL------IPALKGIKALITFGETQNRLEDAGKKAGIPVIKTAENAEAA 413

Query: 434 FLFIQSSLVDGDVVVV 449
                    +GD +++
Sbjct: 414 VPIALELSEEGDSILL 429


>gi|82703611|ref|YP_413177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
 gi|122063250|sp|Q2Y636|MURD_NITMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82411676|gb|ABB75785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
          Length = 473

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 117/346 (33%), Gaps = 34/346 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFE 166
             ++ ITGS GKTT   M    L          G+    +   L        +    + E
Sbjct: 113 PKLVGITGSNGKTTVTAMTGAMLKKAGWDVEVAGNIGPAVLDALMRREDTGKMPQAWVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A +  ++  HL  ++G++E A+AKA IF G +  G   LN
Sbjct: 173 LSSFQL----ETTKSLGLDAAAVLNVSEDHLDRYAGMQEYAAAKARIFLG-DSEGVQILN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            DD     +      L  +   +F  +      DF L +    +     + +L       
Sbjct: 228 GDDPVVRQM-----TLAGRPHVTFSLATPQSADDFGLLREGGDTWLMQGDTRLMDAR--- 279

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   L    +  ++AL  F    G   R          T  D
Sbjct: 280 ELAITGRHNCANALAALALCRALAVPFEPLLQALREF---RGLPHRVEKVAAFSGITFYD 336

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AA+  L Q         + + G   +    S      LA  +  +    
Sbjct: 337 DSKGTNVGATVAALKGLGQ-------PVVLIAGGDGKAQNFSP-----LAAPIGEHG-RA 383

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           V L G     +  A+    + +H ++TM+           +GD V+
Sbjct: 384 VVLIGRDAEKIAVAINECGVPLHRAQTMEEAVRKSFQLAREGDAVL 429


>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
 gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
          Length = 453

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 143/428 (33%), Gaps = 52/428 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDG--------HDFILHAVQKGAG-LVVVNTDMVASIGSL 81
            +DSR   P     A++  + D            I  A Q      V ++   + +  + 
Sbjct: 39  VMDSRKSPPG--LAALQEQNPDAVLRLGGFDAALIAEAEQLVVSPGVALSEPAILAARAR 96

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV G  ++  +            KA +I ITGS GK+T   +L        +     G
Sbjct: 97  GIPVVGDIELFASY----------VKAPVIGITGSNGKSTVTSLLEAMARQAGRQVLAGG 146

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +        L L   PV  D  I EL    L      T+ +    A +  I+P H+  + 
Sbjct: 147 NLGTP---ALELLEKPVP-DLYILELSSFQL----ETTYTLDAVAACVLNISPDHMDRYP 198

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++    AKA I+ G   TGT+ +N DD      +  S     +    F     A     
Sbjct: 199 DLDAYCQAKARIYRG---TGTMVINADD-----FRVASLVQPHRPCLRFTLGMPA-VDEY 249

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             ++ + ++W+    +           G H   N L  L +   +       +   S   
Sbjct: 250 GLQERAGETWLVRGHERLLSARRLPLAGRHNLANALAALALGEAVGLPRAAML---SALQ 306

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              G   R             ++S   N  +  AAI  +       +G+ I + G + + 
Sbjct: 307 AFSGLPHRCEWLAEVNGVRWYNDSKGTNVGATVAAIEGI-----PCQGKLILIAGGVGKG 361

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            + S      L++ L       V L G     L+  L     ++   +MD   +      
Sbjct: 362 ADFSP-----LSKPLIQR-ARAVVLMGQDASRLEAVLASGPPLYRVNSMDEAVVKANVLA 415

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 416 QSGDCVLL 423


>gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
 gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
          Length = 452

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 92/425 (21%), Positives = 156/425 (36%), Gaps = 46/425 (10%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYD------GHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
            +DSR   P     A++  + D      G D    A+   A  +VV+  +  S  ++ + 
Sbjct: 39  VMDSREFPPG--LAALQEHNPDVVLRLGGFD---AALIAEAEQLVVSPGVALSEPAIQVA 93

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                 V+G +   A  A    KA +I ITGS GK+T   +L +      K     G+  
Sbjct: 94  QARGIPVIGDIELFASYA----KAPVIGITGSNGKSTVTSLLEMMARQAGKQVLAGGNLG 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                 L L   PV  D  I EL    L      T+ +    A +  I+P H+  +  ++
Sbjct: 150 LP---ALELLEKPVP-DLYILELSSFQL----ETTYTLNTVAACVLNISPDHMDRYPDLD 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AKA I+ G   TGT+ +N DD     L A+ H   ++  ++ G   N ++ LR++ 
Sbjct: 202 AYFQAKARIYRG---TGTMIINTDDFRVASL-AQPHRSCLR--FTLGNPNNNEYGLREY- 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               + W+    +           G H   N L  L +           + AL VF    
Sbjct: 255 --GGEIWLARGHEELLSTRRLPLAGRHNLANALAALALGEAAGLPRAAMLSALQVF---P 309

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R             ++S   N  +  AAI  +       +G+ + + G + +  + 
Sbjct: 310 GLPHRCEWLAEVKGVRWYNDSKGTNVGATVAAIEGM-----PCQGKLVLIAGGVGKGADF 364

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S      L +         V L G     L+  L   + ++ + +M        +    G
Sbjct: 365 SP-LREPLVQRARA-----VVLIGQDASRLEAVLAGGLPLYRANSMGEAVAKASALAQSG 418

Query: 445 DVVVV 449
           D V++
Sbjct: 419 DCVLL 423


>gi|330828043|ref|YP_004390995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
 gi|328803179|gb|AEB48378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
          Length = 427

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 146/427 (34%), Gaps = 53/427 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           V  + +D+R+  P +     +     G   +  A+ K A ++V +  +  +   L     
Sbjct: 23  VTPLVMDTRANPPGKDQLPPEVELIHG---LDEALLKQAHMIVASPGIALATPELKAAAE 79

Query: 85  --VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  V D               ++  +IAITGS GK+T   ++   ++         G+
Sbjct: 80  CGVQIVGD--------IELFVRETQTPVIAITGSNGKSTVTTLVGEMIAEAGLNVGVGGN 131

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                   L L + P+D    + EL    L      TH +R   +V+  ++  H+  + G
Sbjct: 132 IGTP---ALELLKQPMD--LCVLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQG 182

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +  +AK EI +    +  I +N DD       A++     +   SFG   N   +   
Sbjct: 183 MADYRAAKMEIHQH---SKHILVNRDD-------AQTLPDVGQVWQSFGLDCNGYGRC-- 230

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                 + W+ +  +          +G H   N L  + +   +       +  L  F  
Sbjct: 231 --LLDGRHWLTLHGEPLLAVDEMKIVGAHNQANALAAMALCDAVGIPRAAQLTVLRRF-- 286

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            EG   R R          I++S   N   + A ++ ++ +    +GR + + G   +  
Sbjct: 287 -EGLPHRARFVREVNGVRWINDSKATN---VGATLAAVAGVRESVKGRLLLLAGGQGKGQ 342

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +          + L    I H++  G     L   L           +            
Sbjct: 343 DFGP------IQALLGNQIDHMYCFGQDAEVL---LALGEQTERVADLAAAVANAAVDAK 393

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 394 PGDWVLL 400


>gi|289435377|ref|YP_003465249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171621|emb|CBH28167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 455

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 95/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  ++      +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSEQYISMELSSFQLMGVKTF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +   +   + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQQNQTEDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGP 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 271 R---------DSILLPGEHNLENVLASVAVAKTLGVANEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKALIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|284802483|ref|YP_003414348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284995625|ref|YP_003417393.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
 gi|284058045|gb|ADB68986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284061092|gb|ADB72031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
          Length = 455

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTTDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|154245789|ref|YP_001416747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159874|gb|ABS67090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthobacter
           autotrophicus Py2]
          Length = 537

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 95/274 (34%), Gaps = 32/274 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           ++  IAITG+ GK+TT  ++T  L    +     G+    I         P      + E
Sbjct: 126 RSPFIAITGTNGKSTTTALITHILRVAGRDVQMGGNIGTAILS----LAPPKPGRVHVVE 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                +     L   + P + V+  I P HL     IE  A+ K  +  G+E  GT  + 
Sbjct: 182 CSSYQVD----LAPSLDPSVGVMLNITPDHLDRHGTIEHYAAVKERLVAGVEGGGTAVVG 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGKSME 282
            DD F   +  ++   G   +           ++   +   +  W++    V  +G +  
Sbjct: 238 VDDDFSAAMADRAVEAGKHVV-----------RISVKRALPDGIWLDGETLVVSEGGAER 286

Query: 283 VVHHGIGY------HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 G       H AQN          +    +    A+  F    G   R     N+
Sbjct: 287 FRLPLAGIGSLRGTHNAQNAAAAFAACRGVGVAPEIITIAMKRF---PGLAHRMEEVGNK 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           G    +++S   N  + + A++  + I     G+
Sbjct: 344 GAVLFVNDSKATNADAAERALASFTSIFWIAGGK 377


>gi|332312486|gb|EGJ25581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. Scott A]
          Length = 461

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 161 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 217 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 276

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 277 R---------DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 325 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 372

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 373 --LPFFKNVKALIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|290892183|ref|ZP_06555179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290558306|gb|EFD91824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 455

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 271 R---------DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|317969026|ref|ZP_07970416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0205]
          Length = 459

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 108/347 (31%), Gaps = 30/347 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +++ A         I ITG+ GKTT   ++   L          G+   H    L L R
Sbjct: 98  GEISTAWEASGSTPWIGITGTNGKTTVTHLVAHLLKQGGIDAPMCGNVG-HSAAELALER 156

Query: 156 MPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                      + EL    +         + P I + TT+ P HL     +E   + K  
Sbjct: 157 FSDGQTRPQALVVELSSYQI----ESAPELAPAIGLWTTLTPDHLERHGTLENYRAIKRG 212

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   LE++    LN DD     L A +         +    + A  +        E + +
Sbjct: 213 L---LERSAIQVLNGDDP---DLCAHAATWPNARWITASSREAALAKGIDPWLWIEGNQV 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +             G H  QNMLM L +   L         AL  F        R   
Sbjct: 267 MERSGALLPANALAMPGAHNRQNMLMALAVGLELGLSGPAMEAALRAFPGVP---HRLEL 323

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             +      I++S   N  + + A+  +       EG  +A+ G   + G+ S       
Sbjct: 324 IRSLDGVDWINDSKATNYDAAEVALRAV-------EGPLVALAGGEAKQGDASAW----- 371

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
                  +   V L G      ++ L    +    +  D L   + +
Sbjct: 372 -IAALQRSAKAVVLFGAAQSHFQELLLSGGYTGVIQCCDALPEAVAA 417


>gi|258546150|ref|ZP_05706384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
 gi|258518575|gb|EEV87434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
          Length = 436

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 112/344 (32%), Gaps = 38/344 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +L  AL+         G+    +   L         D  + E
Sbjct: 101 DKPVLAVTGSNGKSTVVTLLAQALNHAGHKAKLCGNIGRPVLDALF---DGEAADCYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L   + P +A +  + P HL  +      A+AKA +   + ++    LN
Sbjct: 158 LSSYQL----ELCPSLYPRVAAVLNVTPDHLDRYDDFAAYAAAKANL---VRQSSICILN 210

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +         + I  +G S     ++       E   + +            
Sbjct: 211 GDDEACVAMAED-----GQNIIYYGTSATLPNRV-------EGGKIWLHGHALLETARLR 258

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L TL ++          + AL  F    G   R +    +      D+S 
Sbjct: 259 LGGAHNHANILCTLLMLEAYGVAPQQVLSALETF---AGLPHRMQLVSEENGVRWYDDSK 315

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N       I   +      +G  + + G + +  + S      LA  L   N+  V L
Sbjct: 316 ATN-------IGAAAAALAGIDGAVVLIAGGVGKNQDFSL-----LARELQQANLRGVLL 363

Query: 407 SGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +        I      TMD      ++    GD V++
Sbjct: 364 IGVDNRDMAAAFTAAGIAFEDCGTMDKAVARARALAQAGDSVLL 407


>gi|163746127|ref|ZP_02153486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
 gi|161380872|gb|EDQ05282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
          Length = 466

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 110/356 (30%), Gaps = 37/356 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                     ++A+TGS GK+TT  ++   L  + +     G+    +          VD
Sbjct: 112 AWDHYDVAPRVVAVTGSNGKSTTSALIHHILEHVGRPCQLAGNIGRGVLD----LDPAVD 167

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  + EL          L   + P +AV T ++P HL   +G+    +AK  +F     
Sbjct: 168 GEVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHAGMGGYYAAKRRLFAEGGP 223

Query: 220 TGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                +  D++    L  + S       +               W+  + + ++    +G
Sbjct: 224 D-RAVIGVDEAEGRFLAGQLSEGPSDDRVIRISAETK--LSGPGWQVFARKGFLSEYRRG 280

Query: 279 K-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           K      +  +    G H  QN          L           + FH   G   R +  
Sbjct: 281 KQVGSIDLRSIQGLPGAHNHQNACAAYAACRALGLAPRVI---EAAFHSFGGLPHRSQTV 337

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   +++S   N  S   A++    I     G          E G    +      
Sbjct: 338 AEANGVRYVNDSKATNVDSAAKALAAFRNIRWICGGLE-------KEGGLKGLAE----- 385

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  ++   ++ G        A+  +       TM+       +   +GDVV++
Sbjct: 386 ---AQGSVRKAYVIGREAAHF--AMQLTTEAEVCGTMEKAVARAAAEAEEGDVVLL 436


>gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 429

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 144/449 (32%), Gaps = 86/449 (19%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +S++      F  +K        F   A++ GA ++                +  +D
Sbjct: 11  ITDNSKTCESGCFF--LKSNSN--AKFENDAIKSGAIIITPKRAKT---------ILNLD 57

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-- 147
           D                   +I ITG+ GKTTT   +   L S+       G+    I  
Sbjct: 58  D----------------GIRLIGITGTNGKTTTAFAIAFGLRSLGYKVGISGTRGAFICD 101

Query: 148 ----GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  LT +++                + + E+    + + R     +   + V T +
Sbjct: 102 KQIADKGLTTSQILETLSYIKQAKESGCRYFVMEVSSHAIAQNRI--EGLNFALKVFTNL 159

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  HL       E A  K+  F+         +N DD   +     +    +K       
Sbjct: 160 SQDHLDYHKSFSEYARVKSSFFDDDSPK---LINGDDESIKFNHKNTMIYWLK------- 209

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVD 311
           + +A F +  +          ++ + ++  +  H  G     N+L  +G +  L+   + 
Sbjct: 210 NSDASFFVENYDFKG-GIKANIKSKNETANLQSHLQGKFNLYNLLAAIGSIKFLSRVSLQ 268

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A  ++  F    GR +     +++    ++D  +   P  ++  +  LS          
Sbjct: 269 EAADSVRKFESVAGRVE----IVSKNPLVIVD--FAHTPDGIEKVLDALSH------DEL 316

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIH 423
           + V G     G+  ++    + +++  Y    +  S           +  +   +  +  
Sbjct: 317 VVVFGA---GGDRDKTKRPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNS 373

Query: 424 VHYSET-MDGLFLFIQSSLVDGDVVVVKS 451
           V   E   D +   I   L  G  VVV  
Sbjct: 374 VFSIENRKDAIKKAI--ELAAGKTVVVLG 400


>gi|85058425|ref|YP_454127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sodalis
           glossinidius str. 'morsitans']
 gi|122063259|sp|Q2NVV3|MURD_SODGM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|84778945|dbj|BAE73722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 438

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 130/347 (37%), Gaps = 38/347 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A ++AITGS GK+T   M+    ++        G+          L  +       
Sbjct: 101 REASAPVVAITGSNGKSTVTCMVGEMAAAAGWQVGVGGNIGLP-----ALTLLDSPCQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      TH ++   A +  I+  H++ +  G+++  +AK +I+        
Sbjct: 156 VLELSSFQL----ETTHSLKAAAATVLNISEDHMNRYPLGLQQYRAAKLKIYH---DAAV 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N +D+    ++            SFG ++  D+ LR+    + Q+W+  + +     
Sbjct: 209 CVVNAEDALTLPVRGHDA-----RCISFG-AERGDYCLRR---HAGQTWLMARGEPLLEG 259

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   L      ++ AL  F    G   R+     +     I
Sbjct: 260 AELRVGGRHNYTNALAALALSDALGIPSAASLAALRQF---RGLTHRFELVHERRGVRWI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA++ L  +     G    +LG   +  + +      L   L    + 
Sbjct: 317 NDSKATNVGSTEAALNGLEVV-----GTLHLLLGGDGKSADFTP-----LTPWLQGDRV- 365

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P +     +ET++     I S +  GD+V++
Sbjct: 366 QLYCFGQDGAQLASLCPEA--ATLTETLEQAMRIIGSRVRAGDLVLL 410


>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 441

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 135/368 (36%), Gaps = 36/368 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG+    +     +  
Sbjct: 86  SDLELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGML--WEIYN 143

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + E     L      T   +P  + I  I P H+     ++   +AK  + +
Sbjct: 144 SDKDT-YFVIECSSFQL----ESTKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLK 198

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEV 274
             ++     LN DD ++E  K  + A     +Y    SKN    +++     + S +   
Sbjct: 199 NQDENCYTVLNADDEYYEECKKFTKA----NVYDISTSKN----VKRGSFIKDNSIYFSD 250

Query: 275 QLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               K ++    + IGYH  QN+L  + +  ++  + D+  + L  F   E    R    
Sbjct: 251 SDCDKIIDLKNVNLIGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVE---HRLEFV 307

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +       ++S   N  +   AI            + + +L      G   +   +D  
Sbjct: 308 RDLSGVKYYNDSKGTNVDASVKAIESFD--------KNVIILA-----GGYDKKVSLDNF 354

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVK- 450
            +        + L G      +        ++++  + M             GDVV++  
Sbjct: 355 FIAGKDKFKALILMGQTRDLFEQKAKEYGFMNIYLVDDMKQAVTQANKIAESGDVVLLSP 414

Query: 451 SSNSCGFY 458
           +S S G Y
Sbjct: 415 ASASWGMY 422


>gi|217963819|ref|YP_002349497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|217333089|gb|ACK38883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|307571610|emb|CAR84789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes L99]
          Length = 455

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 271 R---------DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESSPGDIILL 422


>gi|319788248|ref|YP_004147723.1| UDP-N-acetylmuramate [Pseudoxanthomonas suwonensis 11-1]
 gi|317466760|gb|ADV28492.1| UDP-N-acetylmuramate [Pseudoxanthomonas suwonensis 11-1]
          Length = 467

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 80/426 (18%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A    V      S G+ ++     D          +A R+    T +A+ G+ GKTTT  
Sbjct: 61  AAAEEVVIGNALSRGNAAVEQVLDDGRRYTSGAQWLAERVLPGRTTLAVAGTHGKTTTTS 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV-- 182
           +L   L +  +    +           T AR+    +F + E            +  V  
Sbjct: 121 LLAFLLQAAGRDPGFLVGGVAEDFG--TSARIGSGREF-VVEADEYDTAFFDKRSKFVHY 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A++  +   H   F  +  I      +   + + G + +N +D+    + A     
Sbjct: 178 RPTVAILNNLEYDHADIFPDLAAIQRQFHHLVRTVPRAGRLVVNGEDAHLAEVLAMGCWT 237

Query: 243 GIKTIYSFGKSKNADFQLRKWK-----------QCSEQSWMEVQLQGKSMEVVH-HGIGY 290
            ++   +FG  + AD  + +               ++ S   V   G+ +  V    +G 
Sbjct: 238 PLE---TFGL-EGADVAIARAGGGSGFDWSARLLAADGSAFVVLQDGREVATVLWPLLGR 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  L     +         AL+ FH  +   +R          T+ D+ +  +P
Sbjct: 294 HNVMNALAALAAAHAVGVAPADVAPALAGFHSVK---RRLEVLGEPAGITVYDD-FAHHP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFHIDLAEVLSLYNISHV 404
            +++   + L  +       RI V   M        +G  + +    LA  L L ++  V
Sbjct: 350 TAIR---TTLEGLRAKVGDARIVV--AMEPRSNSMRLGAHADA----LAPSLDLADV-VV 399

Query: 405 WLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           +L    +      +  ++          D L   +Q  +  GD VV   SN  GF     
Sbjct: 400 FLHRPELAWDAGKVVAAVRGQAQAVPDTDALLATLQDLVRAGDHVVFM-SNG-GFDAAPR 457

Query: 459 RLINLL 464
           RL+ +L
Sbjct: 458 RLVAML 463


>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
 gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
          Length = 444

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 108/350 (30%), Gaps = 38/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + + I+ ITGS GKTTT  +               G+                +  + + 
Sbjct: 100 TDSLIVGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSFAE----LVATENPPYYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  I P HL  +    E   ++K  I     +   + 
Sbjct: 156 EISSFQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYINSKFRIAMNQTENDYLI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCSEQSWMEVQLQGKS 280
            + DD       + +H +  K +  F   K     A  +  K     E    E+ ++  S
Sbjct: 212 YDADDEVITQWLS-THTIKSK-LIPFSIEKELPQGAFLKDNKIYIMLENQTTEIDVEEIS 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N +       ++                 +G   R          T
Sbjct: 270 LR------GKHNIKNTMAASVAARLVNI---RNNSLRESLKGFKGAPHRLEEVKVVDGVT 320

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S+  A+  +        G            G+   + +  L   +    
Sbjct: 321 YVNDSKATNVNSVFYALDTIKTPIVWIVG------------GQDKGNDYNSLLPYVHE-K 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           +  +   G     +  +   +I     + +MD      Q    +GD V++
Sbjct: 368 VRAIVCLGVDNTPIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGDTVLL 417


>gi|297520608|ref|ZP_06938994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 262

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 88/269 (32%), Gaps = 15/269 (5%)

Query: 133 IKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           + K      +  + + V   LA +      F   E+     G ++     ++   +V T 
Sbjct: 2   LGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH--GLVQHRVAALKFAASVFTN 59

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E   +AK  ++      G   +N DD       AK       ++    
Sbjct: 60  LSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH- 117

Query: 252 KSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            + N      +          + +         E+  H +G     N+L+ L  +  L  
Sbjct: 118 INPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGY 177

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   +K  +   P  G   R       G  T++ + Y   P +++ A+        H  
Sbjct: 178 PLADLLKTAARLQPVCG---RMEVFTAPGKPTVVVD-YAHTPDALEKALQA---ARLHCA 230

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           G+   V G   +  +  +     +AE  +
Sbjct: 231 GKLWCVFGCGGDRDKGKRPLMGAIAEEFA 259


>gi|262341152|ref|YP_003284007.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272489|gb|ACY40397.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 453

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 88/256 (34%), Gaps = 22/256 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           II+ITGS GKTTT  ++   L          G+        +   +     D  + E+  
Sbjct: 108 IISITGSNGKTTTSSIIYKILKREGIDVGIAGNIGRSFSKEVIKKK-----DVYVLEVSS 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L +      + R +IAV+  I   HL  +  IE    +K +I    +K      N+DD
Sbjct: 163 FQLDD----CQIFRSNIAVLLNITEDHLDRYDDIESYMHSKFKIATLQKKEDIFIYNHDD 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVH 285
                   K         +S  +  +    ++      +    Q      ++        
Sbjct: 219 PLIRKGLKKYPIFSHCIPFSIKEELHIGAYIKNNKIFIRNQKNQEICFFNVKD------I 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H   N++ +L I  I      + +  +    P E    R    L+      I++S
Sbjct: 273 PLIGDHNLYNIMASLMISEIFNVKKKSIVSTILKLKPIE---HRMEKILSINGVQFINDS 329

Query: 346 YNANPASMKAAISVLS 361
              N  ++ +A   ++
Sbjct: 330 KATNVHAVFSAFKSMN 345


>gi|318042232|ref|ZP_07974188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0101]
          Length = 462

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 87/267 (32%), Gaps = 15/267 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++  A    +    I ITG+ GKTT   ++   L          G+        L LAR
Sbjct: 103 GEITTAWEASAGVPWIGITGTNGKTTVTHLIAHLLEQAGLDAPMCGNVGFS-AAELALAR 161

Query: 156 MPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
              +   + + EL    +         + P I V TT+ P HL     ++   + K  + 
Sbjct: 162 SGANAPTWLVVELSSYQI----ESAPALAPRIGVWTTLTPDHLERHGTLDNYRAIKRSL- 216

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             LE +    LN DD       A        T  S  +++ A  +   W + ++      
Sbjct: 217 --LEHSTVRVLNADDPDLRSRAASWDQARWVTAESREQARAAGIEPHLWIEANQVCQASG 274

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L            G H  QNMLM + +   +    +      +      G   R     
Sbjct: 275 PLLPADA---LAMPGAHNRQNMLMAVAVGLEVGLSAEQMA---AALRCFPGVPHRLELIR 328

Query: 335 NQGFFTLIDESYNANPASMKAAISVLS 361
            +      ++S   N  + + A+  L 
Sbjct: 329 ERDGVRWFNDSKATNYDAAEVALRALQ 355


>gi|77165810|ref|YP_344335.1| UDP-N-acetylmuramate,
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|76884124|gb|ABA58805.1| UDP-N-acetylmuramate,
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
          Length = 460

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 128/371 (34%), Gaps = 34/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTT   +L   L          IG    + G    L R P    + + E  
Sbjct: 105 VLAVAGTHGKTTASSLLAWILEYAGHGPGYLIGGVPQNFGASARLGRSP----YFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  RP   ++  +   H   F  +E I      +   +   G I + 
Sbjct: 161 EYDTAFFDKRSKFIHYRPRTLILNNLEYDHADIFPHLEAIQQQFHYLVRTVPNNGLILVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
             D   + L           + + G +      L       + S  EV  +      VH 
Sbjct: 221 SGD---KALATVLSMGCWTPVVNMGIAGGVGSALAARAVADDGSNFEVWYENSCQGQVHW 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G+H   N L  +G        +    +AL  F    G  +R          T+ D+ 
Sbjct: 278 PLLGHHNVANGLAAIGAARHAGVPIGQGCQALERFQ---GVRRRLEVCGKVNGVTVYDD- 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++   ++ L   +  G+ R IAVL    E    +     H D LA  L+L    
Sbjct: 334 FAHHPTAISKTLAGLR--ARVGKARIIAVL----EPRSNTMKLGVHKDSLAPALAL--AD 385

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V +         ++ +  AL  +    + + +  +   +++ +  GD +V+  SN   F
Sbjct: 386 RVLIYQPSDIKWSLIPIVHALGPNKASAFFD-IQAIVDNLRTYVQGGDHIVLM-SNG-NF 442

Query: 458 YRLINLLLEEF 468
             +   LL+  
Sbjct: 443 SHIQQQLLKAL 453


>gi|46908272|ref|YP_014661.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47094495|ref|ZP_00232169.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|226224642|ref|YP_002758749.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes Clip81459]
 gi|254826208|ref|ZP_05231209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|254854027|ref|ZP_05243375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|254933464|ref|ZP_05266823.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|255520494|ref|ZP_05387731.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J1-175]
 gi|300765471|ref|ZP_07075452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|60390485|sp|Q71XX7|MURD_LISMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46881543|gb|AAT04838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017132|gb|EAL07991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|225877104|emb|CAS05816.1| Putative UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607419|gb|EEW20027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|293585026|gb|EFF97058.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|293595449|gb|EFG03210.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|300513782|gb|EFK40848.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|328466096|gb|EGF37266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 1816]
 gi|328472684|gb|EGF43542.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 220]
          Length = 455

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 271 R---------DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKALIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|261417495|ref|YP_003251178.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373951|gb|ACX76696.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328089|gb|ADL27290.1| putative UDP-N-acetylmuramate--alanine ligase murC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 475

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 123/382 (32%), Gaps = 44/382 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLT 152
           +++  + A++  +A  IAI+G+ GK+T   M+   L       +        N       
Sbjct: 99  MHRSEMLAKISKEARTIAISGTSGKSTVTAMVYHILDYAGLQPSVMTGAGLVNLQAQGKI 158

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    ++ + E+  S    +R+      P I VI  I   H    S +E+I    ++
Sbjct: 159 GNAVSGKGEWLVAEVDESDGTLVRY-----EPEIGVILNIDKDHKE-ISELEQIFLKFSQ 212

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               L     + +N      +   A          + FG       Q   +K        
Sbjct: 213 --NVLSAGHILIVNDAHPLAKKFSAGRE-------FDFGYESYVSVQGIDFKSVGTHIQF 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            V+   + ++      G H  +N L            + T   ALS F    G  +R++ 
Sbjct: 264 RVRHGNELVKFEIPLPGKHNMENALAATAAALRAGVSLHTCADALSSF---PGVFRRHQI 320

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHI 390
                  TL+D+ +  NPA + A+I      +   EGR IA            L +    
Sbjct: 321 LGTFNGITLVDD-FAHNPAKIAASIKSAQDFT---EGRVIAWFQPHGFGPTRFLRKDLVD 376

Query: 391 DLAEVLSLYNIS-----------HVWLSG-------FHVLALKDALPRSIHVHYSETMDG 432
            +A+ L   ++             ++ +G              D + +     Y    + 
Sbjct: 377 FIAKTLRPMDMDFDRKNDVMFFSEIYYAGGTVTRDISAGDLADDLILKGCEAIYIADRNE 436

Query: 433 LFLFIQSSLVDGDVVVVKSSNS 454
               +      GD +++  +  
Sbjct: 437 CAKKMLEYAEPGDTILLMGARD 458


>gi|87122629|ref|ZP_01078506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
 gi|86162087|gb|EAQ63375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
          Length = 447

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 125/372 (33%), Gaps = 37/372 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKA-------TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           V   + VL  L +  V  R             ++AITGS  K+T   M+   L +  K  
Sbjct: 79  VALAEPVLQTLAEQGVQMRGDIDLFCEHVNAPLVAITGSNAKSTVTTMVADMLLASGKNV 138

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           A  G+        L L     D  + + EL    L      T ++   +A I  ++  H+
Sbjct: 139 AVGGNLGQP---ALDLLTHTPD--YYVLELSSFQL----ETTRVLNAKVACILNVSEDHM 189

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             +  + +    K +++   E       N  D     L      +G   +++ G +   +
Sbjct: 190 DRYDSLYDYQRVKQKVYRNCES---AVCNKQDILTAPLLPAGTPVG---VFTTGLADLNE 243

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F L       E  W+   ++           G H   N L +  ++ +L  ++ +   A 
Sbjct: 244 FGL----IEDEGFWLCHGVKRLYHSSDIRLKGKHNYANFLASFAMLHLLGVELKSDAIAE 299

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                  G   R          T I++S   N  +  AA+  L             +LG 
Sbjct: 300 Y-LKTFSGLAHRCEFIAEHQGVTYINDSKGTNVGATLAALEGLGS----KHRNIHLILGG 354

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
             +  + S      L   +  Y +  V + G     +  AL    ++ + + +D + +  
Sbjct: 355 KGKGADFSP-----LLSSIQQY-VKSVSVFGEDAKIIIGALGAVDNLSHYQDLDEVMVGC 408

Query: 438 QSSLVDGDVVVV 449
               V  D+V+ 
Sbjct: 409 VEQAVADDIVLF 420


>gi|293604150|ref|ZP_06686558.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817375|gb|EFF76448.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 856

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 136/398 (34%), Gaps = 56/398 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A+ G+ GKTTT  +    L +         S   +I     
Sbjct: 455 EAIIANMYADGDDGRIPVVAVAGTNGKTTTVRLTAHLLGAAGNRVGMTNSDGVYIDNLRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          M  DVD  +FE   +  G +R      R ++A++T I    HL  
Sbjct: 515 DTGDCSGPRSARSVLMHPDVDAAVFE--TARGGILREGLAFDRCNVAIVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + +  +GT  LN  D     + A        +I  F + +N  
Sbjct: 573 GYISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMAASCPG----SITYFAEDRNHP 628

Query: 256 --ADFQLRKWK--------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             A  + +  +          + Q   E++     + +  +G      +N + ++     
Sbjct: 629 VLATHRAQGLRSVYRDGDAIVAAQGAEEIRFPLADIPLTRNGTITFQVENAMASIAAAWA 688

Query: 306 LTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L  D +   + L+ F +  +    R+     +G   + D  Y  NP ++ A +  +  + 
Sbjct: 689 LNLDWEVVRRGLATFVNDAQTAPGRFNVFDYRGATVIAD--YGHNPDAILALVRAVDAMP 746

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                RR  V+    +  +       ++           V L           G  +  L
Sbjct: 747 AK---RRSVVISGAGDRRDEDIRMQTEIL----GAAFDDVLLYQDQCQRGRADGEVLALL 799

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           ++ L  +    + E + G         + L  GD+ ++
Sbjct: 800 QEGLVGAPRTQHIEEIHGEFLAIDTALARLQAGDLCLI 837


>gi|160903250|ref|YP_001568831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Petrotoga mobilis
           SJ95]
 gi|226722942|sp|A9BGS7|MURD_PETMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160360894|gb|ABX32508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Petrotoga mobilis
           SJ95]
          Length = 431

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 136/391 (34%), Gaps = 48/391 (12%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTT 121
           K   L +V+  +  +  +  I      D    L       +  +K  + I ITG+ GK+T
Sbjct: 58  KNCDLAIVSPGIPPNSKAAKIIFENNIDYTTELEYSWQNIKKENKKAVFIGITGTDGKST 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L          G+          LA+    +++ + E+    +    F +  
Sbjct: 118 TTSLIGHILKFADPLTFVGGNIGVP------LAKASETLNYYVVEVSSFQI----FWSKT 167

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240
             P I+V+T +AP HL+    + +    KA++    L+  G   +N D      LK    
Sbjct: 168 FTPEISVLTNLAPDHLNWHKDLNDYYQTKAKLLLRTLKSGGVAVVNEDAVNLLNLKDYQA 227

Query: 241 ALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +   + I +F K+  +    + +  K        E+ +  + +               L 
Sbjct: 228 S---ERIITFSKNMIEGNYIKYKDKKIQVNNKIFELDIFKEDI---------------LA 269

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +      L        +A++ F P +    R     ++      ++S   N  S   A  
Sbjct: 270 SAVTTLNLGISEKIIEEAINSFKPLKY---RLELIKSKNGVNYYNDSKATNVHSAYNAYK 326

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               +        IA+L  + +  +L+      L E L  Y    V + G     +K   
Sbjct: 327 SFRGMHY------IAILSGIPKNEDLTP-----LIEELKTY-AKAVIVFGEMEKEVKK-Y 373

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           P +    +   ++ +FL++      GD VV 
Sbjct: 374 PLNSKFIFKNNLEEVFLYLSEICEVGDNVVF 404


>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
 gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
          Length = 448

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 119/349 (34%), Gaps = 38/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  + AITG+ GKTTT  +    + S   +   +G+           A    +    + E
Sbjct: 105 KGKLAAITGTNGKTTTTALTGEIMRSFYDSVFVVGNIGEPYTAH---ALETEESSVTVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I       RP+++ I  I P HL     +E     K  I +  +   T  LN
Sbjct: 162 VSSFQLETI----MDFRPNVSAILNITPDHLDRHKTMECYTQVKESITKNQKDGDTCVLN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
           YDD+           L I  +Y   + K    + L   K   ++ S +   +        
Sbjct: 218 YDDTVLREF---GETLKINVVYFSSREKLKKGYYLEDGKIVYNDGSKVTEIVDISE---- 270

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  +N++  + I   +   ++   + +  F   E    R      +      ++
Sbjct: 271 LKLLGRHNHENVMAAVAISMNMDVPLEKIQEVIRKFEAVE---HRIEFVTERFGVKYYND 327

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--IS 402
           S   NP    AA+  +  +     G  I + G            H +  E +  ++  + 
Sbjct: 328 SKGTNPD---AAMQAIKAMP----GPTILIAGGY--------DKHSEFDEWIESFDGKVR 372

Query: 403 HVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVV 449
           ++ L G     + +   R       Y+E +        S    GD V++
Sbjct: 373 YLVLIGQTRDKIAECAKRHGFTDIMYAEDLLEAVQVCASYANPGDNVLL 421


>gi|17547501|ref|NP_520903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17429804|emb|CAD16489.1| probable udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
           diaminopimelate ligase transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 461

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 129/379 (34%), Gaps = 42/379 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     L+      DF + E
Sbjct: 102 QKWVLAVAGTHGKTTTTSMLAWILQDAGYD---PGFLVGGVPRNFGLSARLTASDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G + 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLL 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +   + + A+      +    FG   +A + +       +    +V L G+    V
Sbjct: 219 VNGREDSLKRVLARGCWSEAE---FFGAEDSAGWAIANL---GDDDSFDVMLDGQVQGRV 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +      AI++L+ F   +   +R          T+ D
Sbjct: 273 RWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVK---RRMEVRGTVDGITVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P +++  I  L      G  R +AVL      M  +G + Q          SL 
Sbjct: 330 D-FAHHPTAIRTTIDGLR--RRVGAARILAVLEPRSNTMK-LGVMKQQL------PASLE 379

Query: 400 NISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G           L  AL P          +  L   + ++   GD V+V  S
Sbjct: 380 GADQVFAYGAAGGRDAIGWDLAGALAPLGERAQAFSDLVALVEAVTAAARPGDHVLVM-S 438

Query: 453 NSCGFY----RLINLLLEE 467
           N  GF     +L++ L E 
Sbjct: 439 NG-GFGGVHQKLLDALGER 456


>gi|254899266|ref|ZP_05259190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes J0161]
 gi|254912594|ref|ZP_05262606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
 gi|254936921|ref|ZP_05268618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|258609521|gb|EEW22129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|293590586|gb|EFF98920.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
          Length = 455

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTTDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|300214728|gb|ADJ79144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus
           salivarius CECT 5713]
          Length = 458

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 32/307 (10%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IGVP + +A+     D  + EL    L  I        P +AV+T I  AH+      E
Sbjct: 147 NIGVPASQVAQEATSKDTIVTELSSFQLLGITE----YHPKVAVLTNIYEAHIDYHGTRE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              +AK  I     +     +N+D+  ++ L  +S A  I      GKSK+  +    + 
Sbjct: 203 NYVNAKMRIVMNQTENDYFVVNWDNEEWQELSQRSKA-KIVPFSRLGKSKDGAYVADGYL 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E   M V              G H  +N L  + +  I     +   + L+ F    
Sbjct: 262 FYKEDKIMPVD--------NIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFS--- 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +           ++S   N  + + A++  +          + +L    + G  
Sbjct: 311 GVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGFNN--------TVVLLAGGLDRGFT 362

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLV 442
            +     L        +  + + G     +  A   +      +T D             
Sbjct: 363 FEKLEPSL-----KNKVHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSN 417

Query: 443 DGDVVVV 449
           +GDV+++
Sbjct: 418 EGDVILL 424


>gi|296112263|ref|YP_003626201.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis RH4]
 gi|295919957|gb|ADG60308.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis RH4]
          Length = 460

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 121/376 (32%), Gaps = 38/376 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------ 160
              ++A+ G+ GKTTT  ML   L         +      +        +          
Sbjct: 102 DRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGK 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ ++ I +    +   + 
Sbjct: 162 QFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQFHHMIRMIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I +  +    E    K       T+     + +A++Q +     ++ S   V    
Sbjct: 222 SKGQIIIPANTPSLETTLDKG---VWTTVVRTSLNGDAEWQAK--LDANDGSSFWVHHNN 276

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S  V     G H   N L  +     +   V  A  ALS F    G  +R     +   
Sbjct: 277 TSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVKMACTALSHFG---GIKRRMELIGDVDD 333

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAE 394
             + D+ +  +P ++   +            R  A++      M  +G            
Sbjct: 334 ILVFDD-FAHHPTAISTTLDGAK--KRLTPRRIWAIIEPRSNTMK-LGSHRPHL------ 383

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             S      V       L   LK+A+  + +    ++++ +   I++    GD +++  S
Sbjct: 384 AASAAIADQVIWYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIM-S 442

Query: 453 NSCGFY----RLINLL 464
           N   F     RL++ L
Sbjct: 443 NG-DFENIHGRLLDAL 457


>gi|313617977|gb|EFR90137.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL S4-378]
          Length = 461

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 35/300 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  ++      +PHI+VIT I  AHL   +   E   AK  
Sbjct: 161 VAENATSDQYISMELSSFQLMGVQTF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QS 270
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E   S
Sbjct: 217 IQQNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLEQGSYVQNGNIMFDDEVIGS 276

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L G+           H  +N+L ++ +   L    +  +  L  F   E    R 
Sbjct: 277 RDSILLPGE-----------HNLENILASVAVAKTLGVTNEEIMYVLETFKGVE---HRT 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +  +        ++S   N  + ++A+              + +L    + G        
Sbjct: 323 QFVVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL-- 372

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 373 ----LPFFKNVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|114564956|ref|YP_752470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336249|gb|ABI73631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
          Length = 440

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 145/448 (32%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A     +  +    +  + +DSR   P        G      +F    +  G      
Sbjct: 12  LGATGLSVVRFLATKGIKPLVMDSRRHPP--------GADTLAQEFADIELLAGGFDCRY 63

Query: 71  NTDMVASIGSLSIPVFGVDDVLGAL-------NKLAVAARL--RSKATIIAITGSVGKTT 121
                  I S  +P     +V  AL         + + AR     K  ++ ITGS GK+T
Sbjct: 64  LVQASQIIISPGVP-IDTPEVRAALDMGIEVIGDVELFAREIADKKPCVVGITGSNGKST 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
              ++   L +  K+ A  G+          L  +P + DF + EL    L      TH 
Sbjct: 123 VTTLVYEMLLAAGKSVAIGGNIGTP-----ALDLLPQNADFYVLELSSFQL----ETTHS 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    A    ++  H+  +S +     AK  ++    ++  +  N DD     L+  +  
Sbjct: 174 LNCIAATCLNVSEDHMDRYSDLNTYREAKLRLY---PQSRFVMYNRDDELTYPLEPMNQN 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 +  G  +   + L   K     S +   +           IG H   N+L  + 
Sbjct: 231 N-----FGLGVPEGDAWGLSDGKIFHGDSEIINLID-------VTLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +  I+    F    G   R      +   + I++S   N  +  AA+  L+
Sbjct: 279 LADACGVGKEAMIEVAKSFV---GLSHRCELIAVKQGVSYINDSKATNVGATVAALEGLN 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G    + G     G+   S    L E LS  NI+ +   G     +      +
Sbjct: 336 S----HLGDLYLIAG-----GDGKGSDFRPLTEPLS--NITQLITLGRDGRKIAKLKAGT 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V    TM             GD+V++
Sbjct: 385 IEV---ATMAEAVAKAAELASSGDIVLL 409


>gi|329944581|ref|ZP_08292721.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530134|gb|EGF57017.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 525

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 122/403 (30%), Gaps = 61/403 (15%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +++    A        +A+ G+ GKTTT  ML  AL+      A        +   L   
Sbjct: 113 IHRSQALALAAQGLDFVAVAGAHGKTTTSGMLAEALTDAG---ADPSFAIGGVVRALGTG 169

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                    + E   S    + +      P + ++T + P HL  +   E   +A  +  
Sbjct: 170 AHLGSGSTLVAEADESDRSFLNYT-----PRVEIVTNVEPDHLDTYGTTEAFEAAFVDFA 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-----------NADFQLRKW 263
             L   G +     D     L   + A G++ + ++   +                L   
Sbjct: 225 HRLVPGGLLVACAADPGSLRLAQSAAAEGLR-VVTYSFDRPDTLPGGRLVGEGHVHLNIR 283

Query: 264 KQCSEQSWMEVQL-----------------QGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++ +  +   + L                     +E+V    G H+A +          +
Sbjct: 284 ERGASSTRALLTLTRAADREQSGGVAAGAPAQSQVELVLAVPGDHVALDAAGAWAAGIEV 343

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +     +AL  F    G G+R+          +ID+ Y  +P  ++A +    +++  
Sbjct: 344 GVEPAEMARALGSFG---GTGRRFEDRGQAHGVRVIDD-YAHHPTEIEALLHTAREVAQE 399

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEV--------------LSLYNISHVWLSGFHVL 412
             GR + VL     +   +++F     +                         ++G    
Sbjct: 400 RRGR-VLVLFQ-PHLFSRTRTFADRFGQALALADVVVVADVYPARENQADFPDITGE--- 454

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +   +P      +          + +    GD+++   +   
Sbjct: 455 TVAQRVP-GDRAVFVADRQDAAHTLAAQARPGDLLLTVGAGDV 496


>gi|313637023|gb|EFS02594.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL S4-171]
          Length = 455

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  ++      +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSEQYISMELSSFQLMGVKTF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +   +   + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQQNQTEDDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFYDEVIGA 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L    +   L    +  +  L  F   E    R + 
Sbjct: 271 R---------DSILLPGEHNLENVLAXXAVAKTLGVANEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKALIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|241668958|ref|ZP_04756536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877490|ref|ZP_05250200.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843511|gb|EET21925.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 456

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 134/375 (35%), Gaps = 38/375 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +          +S     N+   +   K  ++ S  E+  + G ++E+ 
Sbjct: 222 NDKDENVQKIISMG-------CWSELVRANSSNGISITKHTADYSKFELCDINGNTIEIS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WSLIGEHNALNAMSAYAVAKQLNISDEVINAALESFKGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P S+K  +  +   +   +   IA++      M + G+   +  + + E      
Sbjct: 332 -FAHHPTSIKLTLEAVR--NKAKDAYVIALIDPRSNTMRQ-GDNKDNLPMSIIE------ 381

Query: 401 ISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSC 455
              V L    +L    K+ L  S +V +  ++D     +   L    D ++ +V  SN  
Sbjct: 382 ADRVLLYNHSLLKWDAKEVLKNSNNVDFIVSVDDFVDCVDELLTKYRDRNIQLVMMSNGS 441

Query: 456 --GF-YRLINLLLEE 467
             G   +L+ LL  +
Sbjct: 442 FDGLREKLVKLLETK 456


>gi|78356087|ref|YP_387536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|122063243|sp|Q313Q5|MURD_DESDG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78218492|gb|ABB37841.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 447

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 113/367 (30%), Gaps = 53/367 (14%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P          + ++ +AAR    + ++A+TG+ GKTTT  +    L +  K     G+
Sbjct: 99  LPYLDASRPPEIMAEIDLAARC-VTSPVLAVTGTSGKTTTVSLCAAMLRAAGKRVFLGGN 157

Query: 143 YNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               +    L +A      D  + E+    L         +RP +AV+  I+  HL   +
Sbjct: 158 IGTPLSEYVLDVAAGEAPADVLVLEVSSFQL----QTCTTLRPEVAVLINISANHLDYHA 213

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++E   AK  +F          L                         G  + AD    
Sbjct: 214 DMQEYLDAKFRLFALQGPDDLAVL-----------------------QSGMEELADRYAL 250

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             ++                      +G H   N+                A +A+  F 
Sbjct: 251 AARREF--------FDAVRRFPRTALLGSHNMANIEAAWLACRAFGVTQSQAAQAVEEFA 302

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P E    R            +++S +    SMKAA+    +      G +    GD+  +
Sbjct: 303 PLE---HRLEKVDEVAGVLFVNDSKSTTVDSMKAALESFDRPVLLLCGGKWKG-GDLVSL 358

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                         +   +   V L G      + A    + + +   +   F  + +  
Sbjct: 359 ------------IPVVRRHAKAVGLFGASREIFEHAWADVVPMSWDHDLQTAFRRMTAMA 406

Query: 442 VDGDVVV 448
             GDVV+
Sbjct: 407 QPGDVVL 413


>gi|86148538|ref|ZP_01066825.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
 gi|85833684|gb|EAQ51855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
          Length = 438

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 126/345 (36%), Gaps = 43/345 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +        G+        L      +D D  + E
Sbjct: 107 DKPVVAITGSNGKSTVTDLTGVLAKAAGLNVGVGGNIGIPALDLL-----ELDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+ +   AK  IF   +      +N
Sbjct: 162 LSSFQL----ETTFSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFNNAQ---CAIVN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            +D        +++     ++ +FG     +F +             +   GK +     
Sbjct: 215 RED-------KETYPDQTMSLVTFGLDDQ-EFGVATIDGIEW-----LIDNGKPVLPSQD 261

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L++L ++  +  D   +++A        G   R +   ++     +++
Sbjct: 262 LTLVGRHNVANALVSLALLKQVGIDYSKSLEA---LKAYNGLTHRCQVVADKREIKWVND 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L       +G    ++G + +  + S     +L  VL+  +   +
Sbjct: 319 SKATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELNPVLAQLDRVQL 368

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G         +P        ++M  +   I + LV GD+V++
Sbjct: 369 CCFGEDA---AQFMPLHPSAKTFDSMRDIIESISAQLVSGDMVML 410


>gi|332530687|ref|ZP_08406618.1| UDP-N-acetylmuramate [Hylemonella gracilis ATCC 19624]
 gi|332039855|gb|EGI76250.1| UDP-N-acetylmuramate [Hylemonella gracilis ATCC 19624]
          Length = 480

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 128/382 (33%), Gaps = 36/382 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG---- 163
            ++A+ G+ GKTTT  ML   L          +G    + G+   L  M      G    
Sbjct: 112 HVLAVAGTHGKTTTTSMLAWILEHAGLQPGFLVGGVPLNFGISARLGGMSNRDQAGETGV 171

Query: 164 --------IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   I E            +  V  RP  A++  +   H   F  +  I      +
Sbjct: 172 PEQHRPLFIIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLAAIERQFHHL 231

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +  +G +  N      E L    H        SFG + ++DFQ +      E    E
Sbjct: 232 VRTVPASGRVVFNG---LEESLARVLHQGCWSEQRSFG-AASSDFQAQ-----GEPQDFE 282

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V   G S+  V     G H   N L  +     +      A  AL  F   + R +    
Sbjct: 283 VLRHGVSVAHVQWKVGGVHNQLNALAAIAAAEHVGVTPAQAALALREFQNVKRRMEIRGV 342

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    + + +  +P +++  +  L      G+ R +AV     E    +       
Sbjct: 343 VSRDGGGITVYDDFAHHPTAIRTTLDGLR--RQVGQARILAVF----EPRSNTMKLGTMK 396

Query: 393 AEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A++   L   N++     G    A +   P       ++++D L   + ++   GD ++ 
Sbjct: 397 AQLPWSLEDANLAFCHTGGLGWDAREALAPMGTRAQVADSIDELVSQVIAAARPGDHILC 456

Query: 450 KSSNSCGFYRLINLLLEEFPAI 471
             SN  GF  +   LL+   A+
Sbjct: 457 M-SNG-GFGGVHQKLLKALGAL 476


>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           novyi NT]
 gi|158512394|sp|A0PXN6|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
           NT]
          Length = 458

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 137/382 (35%), Gaps = 63/382 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  ITGS GKTTT  ++   L +        G+  N +   +       + D  + E
Sbjct: 116 PAKIFGITGSDGKTTTTTLVYNILMTEGYKTWVGGNIGNPLFSNI---EEMKEEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  ++        + A++T ++P HL     ++E   AK  IF+  E    + LN
Sbjct: 173 LSSFQLMTMKE-----EINCALVTNLSPNHLDIHKDMDEYVDAKKNIFKYQEVNDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            D+     L  ++ +     +  F + +         +  +  +  ++ L GK +  +  
Sbjct: 228 RDNDITNSLVKEAKS----RVMQFSRKEE-------IESGAYLNGDKLVLLGKEVCALED 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L    +VS   A +++  K  + F   E R +  R           ++
Sbjct: 277 IKLKGMHNVENLLAAFCLVSE-DASIESMAKVATTFTGVEHRCEFVREI---DGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH- 403
           S  ++P    A +    +         I + G            HI   E L+   +   
Sbjct: 333 SIASSPTRTIAGLRAFEK-------PVILIAGGY--------DKHIPF-EPLAEEGLDKI 376

Query: 404 --VWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
             + L+G     +KDA  +++        ++  +  +      +    +GD++ +    +
Sbjct: 377 QALVLTGLTKNKIKDAFDKAMKDRGINIPIYMEDGFNEAIYRAKDIANEGDIITLSPACA 436

Query: 452 S---------NSCGFYRLINLL 464
           S             F  ++N L
Sbjct: 437 SFDMFPNFEVRGNKFKEIVNNL 458


>gi|113866800|ref|YP_725289.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525576|emb|CAJ91921.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 856

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 127/379 (33%), Gaps = 46/379 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------- 155
           +  ++A++G+ GKTTT  ++T  +++        G+   +I                   
Sbjct: 469 RIPVVAVSGTNGKTTTVRLITHIMATSGLRMGMTGTDGVYIQGERIDTGDCSGPRSARNV 528

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKA 211
            +  DVD  +FE   +  G +R      R  +AV+T +    HL     + +E++A  K+
Sbjct: 529 LLHPDVDAAVFE--TARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYINSVEDLAVLKS 586

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK--------SHALGIKTIYSFGKSKNADFQLRKW 263
            I + +   G   LN  D     +           +H      + +          +   
Sbjct: 587 VIVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPNQPAMATHRAQGKRVVFVDGA 646

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              + +   EV++    + +  +G       N + ++     L  D  T  + L+ F   
Sbjct: 647 DIVASEGDTEVRIAVAEVPLTRNGTIGFQVDNAMSSIAAAWALGIDWPTIRRGLATFVND 706

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                      +    TLI + Y  NP ++ A  + +  I      RR+ V+    +  +
Sbjct: 707 AQTAPGRFNVFDYRGATLIAD-YGHNPDAILALCNAVETIPAK---RRMVVISGAGDRRD 762

Query: 384 LSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG- 432
                   +   +       V L           G  +  L++ L  +      E + G 
Sbjct: 763 DDIRRQTQILGGV----FDEVILYQDQCQRGRADGEVLALLREGLQGAQRAGQVEEIRGE 818

Query: 433 --LFLFIQSSLVDGDVVVV 449
                   S L  GD+ +V
Sbjct: 819 FLAIDTALSHLQPGDLCLV 837


>gi|298207886|ref|YP_003716065.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 130/386 (33%), Gaps = 38/386 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV         +  I      D   A+      A   + ATII ITGS GKTT       
Sbjct: 66  VVMKSPGIPDKAPIIKQL--KDNKVAIVSEIEFASEFTNATIIGITGSNGKTTVTRWTHH 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L       +  G+  +     + L+      +  + EL    L +I+      RPHIA+
Sbjct: 124 ILKEGGLNASVGGNIGDSFAKQVALS----PSENYVLELSSFQLDDIKNF----RPHIAI 175

Query: 189 ITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           IT I P HL  +     +  ++K  I         +  + D+         +H +  K +
Sbjct: 176 ITNITPDHLDRYDYDFSKYVASKFRITMNQTNDDYLIYDADNEAINDYLE-AHTIQPKLV 234

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVS 304
             F  +K+      K+    E + + + +    + +    +   G H  +N + +     
Sbjct: 235 -PFSTTKS-----LKYGAYIEHNELIINIDENKIHMPIDSLALKGTHNQKNAMASSSAAK 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L     T  ++L+ F   E    R    L       I++S   N  +   A+  +S  +
Sbjct: 289 MLKIRKQTIRESLANFQGVE---HRLEHVLKINNVNYINDSKATNVNATFYALESMSSDT 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G            G    + +  L  +++   +  +   G     +  A    + +
Sbjct: 346 IWIVG------------GVDKGNDYSQLNALVNE-KVKAIICLGVDNQKILKAFNNCVDI 392

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVV 449
              +++M             GD V++
Sbjct: 393 MVETQSMSEAIKIAYKIGERGDAVLL 418


>gi|295677713|ref|YP_003606237.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1002]
 gi|295437556|gb|ADG16726.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1002]
          Length = 464

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 126/357 (35%), Gaps = 29/357 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   + + G +  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRLGRVVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             +   E +  +        +  FG     + Q  +     ++    V   G+ + VV  
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWEIQPAEQGVPVDE-RFAVYRNGERVGVVDW 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  +     +      A K+LS F   +   +R     +    T+ D+ 
Sbjct: 278 QVQGEHNRMNALAAIAAARHIGVPPAQAAKSLSSFRNVK---RRMEVRGSVDGVTVYDD- 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHV 404
           +  +P +++  ++ L         R +AVL    E    +    +  A++  SL +   V
Sbjct: 334 FAHHPTAIETTVAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  G           L +AL P        + +D L   +  +   GD ++V  SN 
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLDGKAQAFDNLDALVKAVVHAARPGDQILVM-SNG 445


>gi|210608677|ref|ZP_03287954.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
 gi|210152934|gb|EEA83940.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
          Length = 450

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 112/354 (31%), Gaps = 45/354 (12%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K Y        +IG P T A +   +    + E+    L  I    H  RP +
Sbjct: 125 ALLGEIMKNYKESVFVVGNIGNPYTAAALEMREDSVAVAEMSSFQLETI----HEFRPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +E    AK +I +   K  T  LNY+D     +     A     
Sbjct: 181 SAILNITPDHLNRHHTMEAYIKAKEDIAKNQTKEDTCVLNYEDEVTRKIGENVKA----N 236

Query: 247 IYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  F   +  D    L        Q    +             +G H  +N++  + + +
Sbjct: 237 VLYFSSQRKLDRGIYLDDGNIILRQDEEILVCNVNE----LKLLGTHNYENVMAAVAMAA 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++   + +  F   E    R      +      ++S   NP +    I  +++ +
Sbjct: 293 AYGTPMEVIRRTIKEFAGVE---HRIEFVREKDGVAYYNDSKGTNPDAAIKGIQAMNRPT 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G            G    S + +  +      +  + L G     + +A  R   V
Sbjct: 350 VLIGG------------GYDKDSEYEEWIQAFDG-KVKLLVLVGATKEKIAEAAERVGFV 396

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            Y   ++ +        +   GD V++    +S             F  L+N L
Sbjct: 397 SYVMADSFEEAVEKCIEAAEPGDAVLLSPACASWGMFKNYEERGDKFKELVNCL 450


>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
 gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
          Length = 463

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 143/428 (33%), Gaps = 52/428 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDG--------HDFILHAVQKGAG-LVVVNTDMVASIGSL 81
            +DSR   P     A++  + D            I  A Q      V ++   + +  + 
Sbjct: 49  VMDSRKSPPG--LAALQEQNPDAVLRLGGFDAALIAEAEQLVVSPGVALSEPAILAARAR 106

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV G  ++  +            KA +I ITGS GK+T   +L        +     G
Sbjct: 107 GIPVVGDIELFASY----------VKAPVIGITGSNGKSTVTSLLEAMARQAGRQVLAGG 156

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +        L L   PV  D  I EL    L      T+ +    A +  I+P H+  + 
Sbjct: 157 NLGTP---ALELLEKPVP-DLYILELSSFQL----ETTYTLDAVAACVLNISPDHMDRYP 208

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++    AKA I+ G   TGT+ +N DD      +  S     +    F     A     
Sbjct: 209 DLDAYCQAKARIYRG---TGTMVINADD-----FRVASLVQPHRPCLRFTLGMPA-VDEY 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             ++ + ++W+    +           G H   N L  L +   +       +   S   
Sbjct: 260 GLQERAGETWLVRGHERLLSARRLPLAGRHNLANALAALALGEAVGLPRAAML---SALQ 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              G   R             ++S   N  +  AAI  +       +G+ I + G + + 
Sbjct: 317 AFSGLPHRCEWLAEVNGVRWYNDSKGTNVGATVAAIEGI-----PCQGKLILIAGGVGKG 371

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            + S      L++ L       V L G     L+  L     ++   +MD   +      
Sbjct: 372 ADFSP-----LSKPLIQR-ARAVVLMGQDASRLEAVLASGPPLYRVNSMDEAVVKANVLA 425

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 426 QSGDCVLL 433


>gi|161505077|ref|YP_001572189.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866424|gb|ABX23047.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 445

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 142/420 (33%), Gaps = 42/420 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 52  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L +        G     +     ++    +  F + E            +  V   P  
Sbjct: 112 ILEACGYK---PGFVIGGVPGNFEVSARLGESLFFVIEADEYDCAFFDKRSKFVHYCPRT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  ++ I      +   +   G I    +D   +   A       + 
Sbjct: 169 LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQEL 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +     
Sbjct: 229 V-----GEQGHWQAK--KLTTDASEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAATRH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 282 VGVAPAEAASALGSFINAR---RRLELRGEAHGVTVYDD-FAHHPTAILATLAALRG-KV 336

Query: 366 HGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKD 416
            G  R IAVL      M  MG         L           V+L       + V  + D
Sbjct: 337 GGTARIIAVLEPRSNTMK-MGLCKDDLAPSLGR------ADEVFLLQPPHIPWQVSEVAD 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           A  +    H+S  +D L   +  +   GD ++V  SN  GF     +L++ L ++  A +
Sbjct: 390 ACVQ--PAHWSGDVDTLADMVVKTAQPGDHILVM-SNG-GFGGIHQKLLDRLAKKAHATE 445


>gi|23016783|ref|ZP_00056535.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 472

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 141/412 (34%), Gaps = 43/412 (10%)

Query: 80  SLSIPVFGVDDVLGA--LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKT 136
             ++P        GA  L +  + ARL + +T+ I I G+ GK+TT  ML   L    + 
Sbjct: 79  EDTVPDVVAARAQGAPMLTRPQLLARLFNASTLPIGIAGTSGKSTTTGMLGWVLERCGQR 138

Query: 137 YACI-GSYNNHIGVPLTLA--RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
              + G+   +   P +     +       + E+  S  G I   T    P IA++  IA
Sbjct: 139 PTVMNGAVMKNFVRPDSPFSSALVGAGPAFVAEVDESD-GSIANYT----PQIALVNNIA 193

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H      ++E+    A+      K     LN D+       A +  L    + ++  +
Sbjct: 194 LDH----KSMDELRRLFADFTA---KARIAVLNLDND---ETAALAATLPADRLRTYSLN 243

Query: 254 K-NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              AD +        +      + + G+++ V     G H   N L  L         ++
Sbjct: 244 DTGADLRAEDITPAPDGIGFTAREKNGQAVAVKLLVPGRHNVANALAALAAARAAGLGLE 303

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            + +AL  F    G  +R     ++G  T+ID+ +  NP  + A ++ L        GR 
Sbjct: 304 ESARALGEFS---GVRRRLETVGSRGGVTVIDD-FAHNPDKIAATLATLHD----WPGRL 355

Query: 372 IAVL--GDMCEMGELSQSFHIDLAEVLSLYNI----SHVWLSG-----FHVLALKDAL-P 419
           + +        +  +   F    A  L   ++      V+  G          + +A+  
Sbjct: 356 LVMFQPHGFGPLRLMKDEFVACFAGKLGPDDVLIMPDPVYFGGTVDRSVTSDHIAEAVTA 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           R                +      GD +V+  +           +L   P+I
Sbjct: 416 RGHKALAIPERAACGDALVKMARPGDRIVIMGARDDTLSLFAEDILGRLPSI 467


>gi|284008378|emb|CBA74784.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Arsenophonus
           nasoniae]
          Length = 436

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 136/388 (35%), Gaps = 49/388 (12%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L+VV+  +  +   L       D  +  +  + +  R   K  I+AITGS GK+T   
Sbjct: 66  ADLIVVSPGISLATPELK---IAADKGIEIIGDIELFCRETHKP-IVAITGSNGKSTVTA 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++     +     A  G+          L  +  D D  + EL    L      T  ++ 
Sbjct: 122 LVGEMAKAANWRVAIGGNIGTP-----ALTLLAKDYDLYVLELSSFQL----ETTSSLKA 172

Query: 185 HIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +A I  +   H+  +   I++   AK  I+ G        +N  D     L+ +     
Sbjct: 173 AVATILNVTEDHMDRYPSGIQQYRVAKLRIYAG---AKICIINQQDPQTWPLRGRDA--- 226

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLG 301
                SFG +   D+QL            E+Q++G+ +        +G H   N +  L 
Sbjct: 227 --RCISFGINSG-DYQL-------NTRCQELQIKGQPIINTAEIRLVGQHNYLNGVAALA 276

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   +      ++   +      G   R +          +++S   N  S +AA+  L 
Sbjct: 277 LADAVNIPRKASL---AALTQYAGLPHRCQLVHQHLGIQWVNDSKATNVGSTEAALKGLQ 333

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G    +LG   +  + S      L   +S  NI  +   G     L      S
Sbjct: 334 -----VAGTLYLLLGGEGKSADFSP-----LKPYISAKNI-KLCCFGRDGYQLAQLKANS 382

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +   +TM+     I   L  GD+V++
Sbjct: 383 LLL---DTMEQCLRVIVPELKAGDMVLL 407


>gi|16801208|ref|NP_471476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           innocua Clip11262]
 gi|30316097|sp|Q929Y1|MURD_LISIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16414656|emb|CAC97372.1| murD [Listeria innocua Clip11262]
          Length = 455

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 35/300 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  ++      +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVQTF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QS 270
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E   S
Sbjct: 211 IQQNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLEQGSYVQNGNIMFDDEVIGS 270

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L G+           H  +N+L ++ +   L    +  +  L  F   E    R 
Sbjct: 271 RDSILLPGE-----------HNLENILASVAVAKTLGVTNEEIMYVLETFKGVE---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +  +        ++S   N  + ++A+              + +L    + G        
Sbjct: 317 QFVVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL-- 366

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 ----LPFFKNVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 422


>gi|86749115|ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris HaA2]
 gi|118595683|sp|Q2IYL0|MURD_RHOP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86572143|gb|ABD06700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris HaA2]
          Length = 466

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 89/268 (33%), Gaps = 18/268 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  ++   +          G+    I         P      + 
Sbjct: 112 PNAPFVAITGTNGKSTTTALIAHLMRQAGYDTQMGGNIGTAILS----LEPPRAGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTAII 223

Query: 226 NYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSME 282
             DD F      +    G + +  S  +   +     +    Q    +  EV      ++
Sbjct: 224 GVDDGFGRDAADRLERAGKRVVRISVKQPLASGITADRETIVQADGGASHEVA----KLD 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H AQN          L    D     L  F    G   R      QG    +
Sbjct: 280 GIGSLRGLHNAQNAAAAAAAALALGVGPDVLQNGLRSF---PGLAHRMEQVGRQGTTLFV 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGR 370
           ++S   N  +   A+S   +I     G+
Sbjct: 337 NDSKGTNADATAKALSSFGEIFWIAGGK 364


>gi|256821827|ref|YP_003145790.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
 gi|256795366|gb|ACV26022.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
          Length = 451

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 128/372 (34%), Gaps = 29/372 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++A  G+ GKTTT  ML   L          IG    + G+   +   P    F +
Sbjct: 101 HDKWVLAAAGTHGKTTTASMLAWILQYANLEPGFLIGGVPENFGLSARVTESP----FFV 156

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP   ++  +   H   F  +E I +    +   +   G 
Sbjct: 157 VEADEYDTAFFDKRSKFVHYRPRTLIMNNLEYDHADIFPNLEAIKTQFHHLLRIVPGNGL 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           +    DD+  + +  +      + I   G      ++L +     + S  EV   G+   
Sbjct: 217 VIYPKDDANLQNVVERGLWSDKELI---GDEHGWQYKLLE----EDGSHFEVLFAGQKQG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV    IG H   N L  +               AL+ F   +   +R           +
Sbjct: 270 EVNWPLIGLHNVNNALAAIAAARHAGVPASHCCDALAEFKNVK---RRMELKGEASGVKV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+ +  +P ++K  +      +  GE R IA++        +    H D   + SL   
Sbjct: 327 YDD-FAHHPTAVKTTLDGFR--AKVGEQRVIAIVD--LRSATMRSGIHKDTL-LASLKGA 380

Query: 402 SHVWL---SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V +   + F      + + +  ++     +D +   ++  +  GD ++V  SN  GF 
Sbjct: 381 DCVIIHKPAEFDWQFPIEQVNQFDNLKILPDVDSILNSLKEMVQSGDNILVM-SNG-GFG 438

Query: 459 RLINLLLEEFPA 470
            +   LL++  A
Sbjct: 439 AIHQKLLQQLAA 450


>gi|146299571|ref|YP_001194162.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium johnsoniae
           UW101]
 gi|189028988|sp|A5FIY4|MURC_FLAJO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146153989|gb|ABQ04843.1| UDP-N-acetylmuramate--alanine ligase [Flavobacterium johnsoniae
           UW101]
          Length = 449

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 126/371 (33%), Gaps = 46/371 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLAR 155
           +  V   +       A+ G+ GKTTT  +L   L        A +G    +    L    
Sbjct: 100 RAEVLGIITKDTFSFAVAGTHGKTTTSSILGHILHQSGADVTAFVGGIVENYNSNL---- 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +       + E        +      + P IA +T++   HL  +   + I ++  E   
Sbjct: 156 IGTGKTVTVVEADEFDRSFLH-----LHPDIACVTSMDADHLDIYGTSDAIQASFIEFAS 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +E    +F+             +  L ++ +     +++A ++    +        +VQ
Sbjct: 211 KVEDKSKLFI-------------TKELPLEGVQC-AINEDAVYKAYNVRIEDGNYVFDVQ 256

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              + M ++     G H   N LM + +        D   KA++ F    G  +R+   +
Sbjct: 257 TPSEIMKDLRFGLPGKHNLMNGLMAIAMAKTYGTPTDAIAKAIASF---NGIRRRFSYQI 313

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  ID+ Y  +P  + A    + ++ P   GR++  +     +   ++ F    AE
Sbjct: 314 KSDKLVYIDD-YAHHPTEINAVHQAVRELYP---GRKVLAVFQ-PHLFSRTRDFADGFAE 368

Query: 395 VLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            LS          Y    + + G     L D +        +   + L   I++S     
Sbjct: 369 SLSQFDEVFLMDIYPARELPMEGITSQWLLDKMTNPNRKIVA--KEDLLAEIKASDAP-- 424

Query: 446 VVVVKSSNSCG 456
           ++V   +   G
Sbjct: 425 IIVTIGAGDIG 435


>gi|326771694|ref|ZP_08230979.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
 gi|326637827|gb|EGE38728.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
          Length = 524

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 136/400 (34%), Gaps = 56/400 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153
           +++    A        +A+ G+ GKTTT  ML  AL+      +  IG     +G    L
Sbjct: 113 IHRSQALALAARGLDFVAVAGAHGKTTTSGMLAEALTEAGADPSFAIGGVVRALGTGAHL 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              P      + E   S    + +      P + ++T + P HL ++   E   +A  + 
Sbjct: 173 GSGPA----LVAEADESDRSFLNYT-----PRVEIVTNVEPDHLDSYGTAEAFETAFVDF 223

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-----------KNADFQLRK 262
              L   G +     D+    L   + A G++ + ++  +                 L  
Sbjct: 224 AHRLVPGGLLVACAADAGALRLAQSAAAEGLR-VVTYSFAGPDTLPGGVLVGEGHVHLDI 282

Query: 263 WKQCSEQSWMEVQL--------QGKSMEVVHHG--------IGYHMAQNMLMTLGIVSIL 306
            ++ +  +   + L         G + E  HHG         G H+A +          L
Sbjct: 283 QERGASSTRGLLTLTTAAGREPAGGAGEEPHHGPVELVLAVPGDHVALDAAGAWAAGIEL 342

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +     +AL  F    G G+R+          +ID+ Y  +P  ++A +     ++  
Sbjct: 343 GVEPALMARALGAFG---GTGRRFEDRGEADGVRVIDD-YAHHPTEIEALLRTARGVAQE 398

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW--------LSGFHVLALK 415
             GR + VL     +   +++F     + L+L +   ++ V+                + 
Sbjct: 399 RGGR-VLVLFQ-PHLFSRTRAFADRFGQALALADAVVVTDVYPARETQADFPDITGDTVA 456

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +P       +E +D     +      GD+++   +   
Sbjct: 457 QRVPGGTARFVAERLDAAHA-VADLARPGDLLLTVGAGDV 495


>gi|327404202|ref|YP_004345040.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
 gi|327319710|gb|AEA44202.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
          Length = 459

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 140/398 (35%), Gaps = 40/398 (10%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              +I      +  V+     L +  V   +   +  + + G+ GKTTT  ML   LS  
Sbjct: 82  YTPAIPKNMGELVYVEKRHKVLKRSEVLGLITQTSKGLGVAGTHGKTTTSTMLAYVLSQS 141

Query: 134 K-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             K  A +G  +++    + +       D+ + E        +R     ++P+ ++IT +
Sbjct: 142 HLKCSAFLGGISSNFNSNVLV---DASADYSVIEADEFDRSFLR-----LKPYASIITAM 193

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL  +   E       E          +   Y+              G + I S+G 
Sbjct: 194 DPDHLDIYGTEELFQEGFQEYANKHSDNQLLIYKYNLPL--------KQTGFRGI-SYGI 244

Query: 253 S-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADV 310
           +  +A            +  +++Q Q +  E V     G H A+N L    +   L    
Sbjct: 245 NTPSAQVNGSNLHYEDGKFILDIQFQDELWESVSLGLPGIHNAENALAVAMMCRELGLSE 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L  F   +   +R+   L       ID+ Y  +P  + A +S +  + P  + +
Sbjct: 305 EEIRSGLKNFKGVK---RRFEYHLRTEKLIYIDD-YAHHPTEIAALVSSIRLLYP--DKK 358

Query: 371 RIAVL--GDMCEMGELSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            I V          +    F ++L     A ++ +Y      + G     L   + +   
Sbjct: 359 IIGVFQPHLFSRTRDFEDGFVVELSKLDQAIIMPIYPAREEPIEGVTSDELVRKIGKKAS 418

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +   +T   +  F+ SS+ +G VV+   +      R++
Sbjct: 419 L---KTPKEVLEFM-SSVDEG-VVLTIGAGDI--DRIV 449


>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
 gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
          Length = 435

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 127/399 (31%), Gaps = 50/399 (12%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V         L          +K  IIAITG+ GK+TT  ++   L    K     G+Y 
Sbjct: 70  VKHCRSNRIKLISELELGYRYAKGKIIAITGTNGKSTTVALVERILKGASKRVIACGNYG 129

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +   +       + ++ + E     L  I       +P+IA I  IA  HLS    ++
Sbjct: 130 LPLSEAIY-----ENAEYYVVEASSYQLEFIDKF----KPNIAAILNIAFDHLSWHGSMD 180

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AK +IF+   +      N  DS+    KA    +  +        +NAD       
Sbjct: 181 NYIEAKKKIFKNQLEDDFFIKNDSDSYIFDGKANLFLVSKR-------DRNADC------ 227

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E++ + V              G  + +N+     I  +   +  T  + +      E
Sbjct: 228 -FFEKNGVIVNRPEYLRIDKTGLFGSKVFENIAFAALIGLLCGIEKKTIKEVVGTMSNLE 286

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R             ++S   N  +++AAI+   +       + + +LG     G+ 
Sbjct: 287 ---HRIEFVDEIDGVKFYNDSKATNLDAVEAAINSFDE-----GIKIVIILG-----GKH 333

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVD 443
               +  L  +L       V + G     + + L   + V      + G           
Sbjct: 334 KGESYSRLLPLLEKR-ARAVVVYGEDRKVILNELDGFLPVPLPAVNIWGAVRAAFEVASK 392

Query: 444 GDVVVVK--SS----------NSCGFYRLINLLLEEFPA 470
            DVV+     S              F + + +  +E+  
Sbjct: 393 DDVVLFSPGGSSCEPYKNFEERGEAFKKEVEVFKKEYEQ 431


>gi|241191221|ref|YP_002968615.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196627|ref|YP_002970182.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|240249613|gb|ACS46553.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251181|gb|ACS48120.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794214|gb|ADG33749.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 513

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 138/432 (31%), Gaps = 61/432 (14%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           + A +VV ++ +      +   V  V +    +++  + A L +    + + G+ GKTTT
Sbjct: 83  QDAQVVVYSSAIKPDNPEI---VAAVANGAQLVHRSDILALLMNGKHAVTVAGAHGKTTT 139

Query: 123 KEMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             +L   L           +YA  GS     G  L            + E   S     +
Sbjct: 140 SSLLAHILMHAGTGELADPSYAIGGSIQGPDGTTLDGGHAGKGT-VLVAEADESDGSFAK 198

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL 235
           +      P I +IT     HL ++   E   +A A   + +       +   DD+    +
Sbjct: 199 Y-----HPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVDDAGALAV 250

Query: 236 KAKSHALGIKTIYSFGKS--------KNADFQ--LRKWKQCSEQSW-MEVQLQ------G 278
                    + + ++             A F     + +  +  +    + +        
Sbjct: 251 LRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIPAALVGAD 310

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++ V     G H A+N    +    +L  D + A  A   F    G  +R++       
Sbjct: 311 VALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFL---GANRRFQIRGTVSD 367

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T++D+ Y  +P  + A +    +  P  +     VL     +   +Q F  + A+ LSL
Sbjct: 368 ITVVDD-YAHHPTEITALLKAARRRYPDSQLH---VLFQ-PHLFSRTQFFAQEFADALSL 422

Query: 399 YNISHVWLSGFHVLALKDA---------------LPRSIHVHYSETMDGLFLFIQSSLVD 443
                V ++G      K +                  S  +   + M      +      
Sbjct: 423 --ADDVIVTGIFPAREKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQP 480

Query: 444 GDVVVVKSSNSC 455
           GDV+    +   
Sbjct: 481 GDVIFTVGAGDI 492


>gi|163816707|ref|ZP_02208070.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
 gi|158447964|gb|EDP24959.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 116/364 (31%), Gaps = 28/364 (7%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +    +      A    K  I AITG+ GKTTT  ++   + +   +   +G+     
Sbjct: 91  VRNAGIPIWSEIELAYHYGKGKIAAITGTNGKTTTTALVGEIVKAYNASTIVVGNIGIPY 150

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                      D    + E+    L           P+++ I  + P HL+     E   
Sbjct: 151 TELCDTTNEDSDT---VAEISSFQL----ETVIDFHPNVSAILNLTPDHLNRHYTFENYG 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           + K  I +         LNYDD     +  K+ +      +S  +       +       
Sbjct: 204 NVKFSITKNQTMDDVTVLNYDDEHTRAMGEKAKSHVRVVYFSRLEKPAGGVYVEDGNIVL 263

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E    ++ +   S       +G H  +N+L  +GI   +   VD      + F   E   
Sbjct: 264 EDGDKKINVLALS---DLKLLGAHNVENVLAAVGISYYMGVPVDVIRNVATSFKAVE--- 317

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R             ++S   NP +    I  +  +SP        ++G   + G     
Sbjct: 318 HRIEYVDTINGVAYYNDSKGTNPDAAIKGIQAM--VSPTY------LIGGGYDKGSEYDE 369

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD 445
           +            +  + L G     + D   R     + + E +     +   + VDGD
Sbjct: 370 WIEAFG-----GKVKCLVLIGQTAQKIADCAKRHGFNSIVFEENLQEAVAYCHENAVDGD 424

Query: 446 VVVV 449
            V++
Sbjct: 425 AVLL 428


>gi|183602425|ref|ZP_02963791.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|183218344|gb|EDT88989.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis HN019]
          Length = 511

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 138/432 (31%), Gaps = 61/432 (14%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           + A +VV ++ +      +   V  V +    +++  + A L +    + + G+ GKTTT
Sbjct: 81  QDAQVVVYSSAIKPDNPEI---VAAVANGAQLVHRSDILALLMNGKHAVTVAGAHGKTTT 137

Query: 123 KEMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             +L   L           +YA  GS     G  L            + E   S     +
Sbjct: 138 SSLLAHILMHAGTGELADPSYAIGGSIQGPDGTTLDGGHAGKGT-VLVAEADESDGSFAK 196

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL 235
           +      P I +IT     HL ++   E   +A A   + +       +   DD+    +
Sbjct: 197 Y-----HPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVDDAGALAV 248

Query: 236 KAKSHALGIKTIYSFGKS--------KNADFQ--LRKWKQCSEQSW-MEVQLQ------G 278
                    + + ++             A F     + +  +  +    + +        
Sbjct: 249 LRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIPAALVGAD 308

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++ V     G H A+N    +    +L  D + A  A   F    G  +R++       
Sbjct: 309 VALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFL---GANRRFQIRGTVSD 365

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T++D+ Y  +P  + A +    +  P  +     VL     +   +Q F  + A+ LSL
Sbjct: 366 ITVVDD-YAHHPTEITALLKAARRRYPDSQLH---VLFQ-PHLFSRTQFFAQEFADALSL 420

Query: 399 YNISHVWLSGFHVLALKDA---------------LPRSIHVHYSETMDGLFLFIQSSLVD 443
                V ++G      K +                  S  +   + M      +      
Sbjct: 421 --ADDVIVTGIFPAREKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQP 478

Query: 444 GDVVVVKSSNSC 455
           GDV+    +   
Sbjct: 479 GDVIFTVGAGDI 490


>gi|330973391|gb|EGH73457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 137

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++    
Sbjct: 9   NGTRVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAHA 64

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   +S ++  G  +     A     H ++  +   L   + +       +++K S S  
Sbjct: 65  AG-KVSALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDSDTTLLIKGSRSAA 121

Query: 457 FYRLINLL 464
              ++  L
Sbjct: 122 MEHVVAAL 129


>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
 gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 113/348 (32%), Gaps = 36/348 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            AITG+ GKTT   +    L +       +G+       P+       + ++ + EL   
Sbjct: 113 CAITGTNGKTTVTSLTDELLRASGLDSVAVGNIG---NAPIHEVDRREEGEWFVAELSSY 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      T    P +AV+  ++P HL+     E  A AK  +F+ ++      +N +D 
Sbjct: 170 QLA----TTEAFHPRVAVLLNLSPDHLAWHRSHENYALAKIRMFKNMDDGDIAIVNVEDE 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HH 286
                  +    G + +                        + V++ G    +V      
Sbjct: 226 GLSPYLDRICGPGRRVL-----HLGFADDGAADAAFVRDDVLTVRMAGDEHALVRVDELR 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L          A V      L  F P      R            +++S 
Sbjct: 281 IVGAHNVLNALAASAAALACGASVTGVCSGLREFKPLP---HRLEPVDTVDGVRYVNDSK 337

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  ++  A++           R + +LG      +        +A+V S   ++ V  
Sbjct: 338 ATNTDAVLTALAAFD------GARIVLLLGG----SDKGTPLEEFMAKVASR--VACVVC 385

Query: 407 SGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+ AL  +     I +  +E +       +S    GD V++
Sbjct: 386 FGEARERLRTALMDAPGATDIDIAEAEDLRDAVDVARSLAQRGDTVLL 433


>gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
 gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           DSM 20016]
 gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 516

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 138/429 (32%), Gaps = 62/429 (14%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +  +       +S DSR +     FF  KG       ++  A +KGA   V   +     
Sbjct: 21  VSNLTDFTATSVSYDSRKVKSGTLFFC-KGNFL--PKYLASAKEKGAIAYVAEKEYPEGE 77

Query: 79  GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           G   +P   V+D   A++ L        ++   IIAITG+ GKTTT       L+     
Sbjct: 78  G---LPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHILAQSTAD 134

Query: 137 YACIGSYNNHIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIR 176
           +  + S  + I       +   D                    +   + E+        +
Sbjct: 135 HIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRVAVDNGMTHLVMEVSSQAYK--K 192

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFE 233
              + ++  + +   I+P H+         +    K ++   L  +    +N + + F +
Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQL---LVNSAKCLINAETEKFTD 249

Query: 234 LLKAKSHALGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQGKSME-- 282
           +          + I+ F +         +   DF+ R   +   +S  E+    +  +  
Sbjct: 250 VYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQL 309

Query: 283 -----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G +   N +  +    +  A  + A+      +    RG+      N  
Sbjct: 310 NLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAV---ETLNHVHIRGRMEMINSNTH 366

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D  Y  N AS+K  ++ L        G+   VLG     G+   S      + L+
Sbjct: 367 GTIYVD--YAHNYASLKRLLAFLK--RQTNAGKVTVVLGA---TGDKGISRRPGFGKALT 419

Query: 398 LYNISHVWL 406
                 V L
Sbjct: 420 EEQPDEVIL 428


>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 413

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 64  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGKSLALQV----AEEHH 119

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 120 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTT 175

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG 278
                   DD   +   AK         ++  K   A   +   +   +E     ++   
Sbjct: 176 DDAFIFWNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNME--- 232

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 233 ---QEELALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVE---HRLEKVARVRG 286

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 287 IDFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRE 334

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L     R  + V   +T M             G+ V++
Sbjct: 335 KCSALVYL-GLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 386


>gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
 gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
          Length = 516

 Score =  106 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 142/429 (33%), Gaps = 62/429 (14%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +  +       +S DSR +     FF  KG       ++  A +KGA   V   +     
Sbjct: 21  VSNLTDFTATSVSYDSRKVKSGTLFFC-KGNFL--PKYLASAKEKGAIAYVAEKEYPEGE 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           G   +P   V+D   A++ L  A     ++   IIAITG+ GKTTT       L+     
Sbjct: 78  G---LPAIIVNDEQKAMSLLGAAFYDYPQNDLFIIAITGTKGKTTTAYFADHILAQSTAN 134

Query: 137 YACIGSYNNHI-------------GVPLTL-------ARMPVDVDFGIFELGMSHLGEIR 176
           +  + S  + I               P +L       A +   +   + E+        +
Sbjct: 135 HIALFSTLDRILGNKPEDEFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK--K 192

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFE 233
              + ++  + +   I+P H+         +    K ++   L  +    +N + + F +
Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQL---LVNSAKCLINAETEKFTD 249

Query: 234 LLKAKSHALGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQGKSME-- 282
           +          + I+ F +         +   DF+ R   +   +S  E+    +  +  
Sbjct: 250 VYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQL 309

Query: 283 -----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G +   N +  +    +  A  + A+      +    RG+      N  
Sbjct: 310 NLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAV---ETLNHVHIRGRMEMINSNTH 366

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D  Y  N AS+K  ++ L        G+   VLG     G+   S      + L+
Sbjct: 367 GTIYVD--YAHNYASLKRLLAFLK--RQTNAGKVTVVLGA---TGDKGISRRPGFGKALT 419

Query: 398 LYNISHVWL 406
                 V L
Sbjct: 420 EEQPDEVIL 428


>gi|157377044|ref|YP_001475644.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
 gi|157319418|gb|ABV38516.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
          Length = 487

 Score =  106 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 140/407 (34%), Gaps = 42/407 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +A  +     ++A++G+ GKT+T  ML  
Sbjct: 87  LVVVGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILPNRWVLAVSGTHGKTSTSSMLAW 146

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    + GV   L   P    F + E            +  V  +P 
Sbjct: 147 ILEECGYEPGFLIGGVPQNFGVSARLGNSP----FFVVEADEYDSAFFDKRSKFVHYQPR 202

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-------- 237
             VI  +   H   F  ++ I      +   +   G I    D    + +          
Sbjct: 203 TLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGQGKIIWPKDSEAVQQVIEMGCWSEQE 262

Query: 238 ---KSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVV-HHGIGYHM 292
              KS + G K I      + A  Q    +    +    E+   G S  ++    IG H 
Sbjct: 263 TYTKSQSRGPKAI-----EQQAPAQGWSTQLIADDGHKFELFFNGDSQGILDWSLIGQHN 317

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N  M +     +    + AI+AL+ F P +   +R           + D+ +  +P +
Sbjct: 318 VENATMAIAAALHVGVQPEVAIEALTKFSPPK---RRMELIGTVNGIEVYDD-FAHHPTA 373

Query: 353 MKAAISVLSQISPHGEGRRIAVL----GDMC-EMGELSQSFHIDLAEVLSLYNISHVWLS 407
           +   +      +  GEG+   +L      M   + + + +  + LA+   LY   ++   
Sbjct: 374 IATTLQ--GTRAKVGEGKITIILEPRSNTMKSGVHKDTLADSMKLADEAYLYQADNI--- 428

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           G+ V A  +     + V Y   +D +   + S    GD ++V  SN 
Sbjct: 429 GWDVKAAMEKAELPVTVLY--QIDEIIDAVASKAKSGDTIIVM-SNG 472


>gi|313622984|gb|EFR93280.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL J1-023]
          Length = 461

 Score =  106 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 35/300 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  ++      +PHI+VIT I  AHL   +   E   AK  
Sbjct: 161 VAENATSDQYISMELSSFQLMGVQTF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QS 270
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E   S
Sbjct: 217 IQQNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLEQGSYVQNGNIMFDDEVIGS 276

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L G+           H  +N+L ++ +   L    +  +  L  F   E    R 
Sbjct: 277 RDSILLPGE-----------HNLENILASVAVAKTLGVTNEEIMYVLETFKGVE---HRT 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +  +        ++S   N  + ++A+              + +L    + G        
Sbjct: 323 QFVVEWQGRKFYNDSKATNILATQSALRGFKN--------PVVLLAGGLDRGNSFDEL-- 372

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 373 ----LPFFKNVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|219683260|ref|YP_002469643.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620910|gb|ACL29067.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis AD011]
          Length = 525

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 138/432 (31%), Gaps = 61/432 (14%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           + A +VV ++ +      +   V  V +    +++  + A L +    + + G+ GKTTT
Sbjct: 95  QDAQVVVYSSAIKPDNPEI---VAAVANGAQLVHRSDILALLMNGKHAVTVAGAHGKTTT 151

Query: 123 KEMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             +L   L           +YA  GS     G  L            + E   S     +
Sbjct: 152 SSLLAHILMHAGTGELADPSYAIGGSIQGPDGTTLDGGHAGKGT-VLVAEADESDGSFAK 210

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL 235
           +      P I +IT     HL ++   E   +A A   + +       +   DD+    +
Sbjct: 211 Y-----HPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVDDAGALAV 262

Query: 236 KAKSHALGIKTIYSFGKS--------KNADFQ--LRKWKQCSEQSW-MEVQLQ------G 278
                    + + ++             A F     + +  +  +    + +        
Sbjct: 263 LRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIPAALVGAD 322

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++ V     G H A+N    +    +L  D + A  A   F    G  +R++       
Sbjct: 323 VALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFL---GANRRFQIRGTVSD 379

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T++D+ Y  +P  + A +    +  P  +     VL     +   +Q F  + A+ LSL
Sbjct: 380 ITVVDD-YAHHPTEITALLKAARRRYPDSQLH---VLFQ-PHLFSRTQFFAQEFADALSL 434

Query: 399 YNISHVWLSGFHVLALKDA---------------LPRSIHVHYSETMDGLFLFIQSSLVD 443
                V ++G      K +                  S  +   + M      +      
Sbjct: 435 --ADDVIVTGIFPAREKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQP 492

Query: 444 GDVVVVKSSNSC 455
           GDV+    +   
Sbjct: 493 GDVIFTVGAGDI 504


>gi|187931383|ref|YP_001891367.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712292|gb|ACD30589.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G S+EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNSVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|209884381|ref|YP_002288238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872577|gb|ACI92373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 90/270 (33%), Gaps = 22/270 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  IAITG+ GK+TT  +    +          G+    I         P      + 
Sbjct: 112 PGAPFIAITGTNGKSTTTALTAHLMREAGFDAQMGGNIGTAILS----LAPPAPQRVYVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A  K  +  G+ + GT  +
Sbjct: 168 EMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGSIEHYAEVKERLVVGVPRGGTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWMEVQLQGKS 280
             DD F     A++     K +      +  D  +     R  +  +  +   V L G  
Sbjct: 224 GVDDDFSTK-AARAAEDTGKHVVRVSVQRALDDGVFLDGERIVRGAAGGTAKLVDLNG-- 280

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +    G H AQN          L    D   + L+ F    G   R      +G   
Sbjct: 281 ---IGSLRGRHNAQNAACAASAALALGVPFDVVQRGLASF---PGLAHRMEQVGQKGEVL 334

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGR 370
            +++S   N  +   A+S  + I     G+
Sbjct: 335 FVNDSKGTNADAAARALSSFTNIYWIAGGK 364


>gi|134302482|ref|YP_001122452.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050259|gb|ABO47330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G S+EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNSVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|119357665|ref|YP_912309.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355014|gb|ABL65885.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 474

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 96/289 (33%), Gaps = 33/289 (11%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP + +I  I   H   F+ +++I  +   +   +   G + +N D      + +++ 
Sbjct: 180 LYRPDVVIINNIEFDHADIFNSLDDIKRSFRLLVNLIPGNGLLLVNGDAPDALAVASRAF 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299
                 +  FG + N+++  R     +  +  ++  +G           G H   N +  
Sbjct: 240 C----RVERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +          D+    L +F   +   +R     +      + E +  +P ++KA +  
Sbjct: 296 VAAAIHSGISFDSIAAGLPLFKRPK---RRMEITDDSANRITLIEDFAHHPTAVKATLEA 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----------- 408
           ++ + P    RRI    +          F  +LA      +I    + G           
Sbjct: 353 IADLYPK---RRIIACFEPRSNTTTRNIFQNELAACFDPASI---VIMGMVHRPERYRPE 406

Query: 409 --FHVLALKDALPRSIHVHYSET------MDGLFLFIQSSLVDGDVVVV 449
                  LK+ L       +            +  FI + L   DVVV+
Sbjct: 407 ERLDTERLKNELENKGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVL 455


>gi|56707582|ref|YP_169478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670053|ref|YP_666610.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456651|ref|ZP_03665124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370102|ref|ZP_04986108.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874403|ref|ZP_05247113.1| mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604074|emb|CAG45071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320386|emb|CAL08454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|151568346|gb|EDN34000.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840402|gb|EET18838.1| mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158739|gb|ADA78130.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G S+EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNSVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-4]
 gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-4]
          Length = 439

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 155/448 (34%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       AF    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDC-RYLVQAKQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                + ++T  V +   + I V G  DV   L    +A R   K  +I ITGS GK+T 
Sbjct: 71  IISPGIAIDTPEVRAALDMGIEVIG--DV--ELFAREIADR---KPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L       A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMLREAGMAVAVGGNIGIP-----ALDLLTENADIFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               +    +   H+  +S ++    AK  ++     + +I  N DD+    +  +    
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSIIFNRDDAL--TIPTEPMNQ 229

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
                 SFG +     +  +W  C  + +       + M +     IG H   N+L  + 
Sbjct: 230 N-----SFGLAPP---EGDEWGICDSKIY---HGHSEIMPITEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V  +  D     K    F    G   R      +   T +++S   N  +  AA+  LS
Sbjct: 279 LVYAVGVDKQVMAKVARTFT---GLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G   +  + S      L E L    ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAGGDGKGADFSP-----LVEPL--TKVTHLITLGRDGNKIAALKEGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V   ++M             GD+V++
Sbjct: 385 IKV---DSMAAAVAKAAELATSGDIVLL 409


>gi|332286762|ref|YP_004418673.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
 gi|330430715|gb|AEC22049.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
          Length = 452

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 123/375 (32%), Gaps = 41/375 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            ++A+ G+ GKTT+  ML   L    +     IG   + + V    AR   +    + E 
Sbjct: 104 HVLAVAGTHGKTTSSSMLAWILEHAGRRPNFLIGGIADDLQVS---ARYQAERPLFVIEA 160

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V  RP  A++  +   H   F  +  I +    +   +   G I  
Sbjct: 161 DEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIQTQFHHLVRTIPSQGRIVR 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             D +  + +  +        +++FG     + Q  +       S   V  QG+    + 
Sbjct: 221 PADSAALDQVLERG---CWTPVHTFGPGGQWEAQASE-----HASHFPVTHQGRHAGTIR 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  L     L       I+ALS F   +   +R           + D+
Sbjct: 273 WALTGEHNRMNALAALAAAEHLGVGPQAGIEALSAFRGVK---RRMELRGTVREVDVYDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P ++   +  L      G+ R +AVL      M  +G ++      LA+      
Sbjct: 330 -FAHHPTAIATTLEGLR--KQVGKRRILAVLEPRSNTMK-LGAMAARLPEALAQ------ 379

Query: 401 ISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G             +   P          +D +   I  +   GD V+V  SN
Sbjct: 380 ADLVFCFGADSGKHALGWDPAQVLSPLGARASSYSDLDKMVGAICQAAQPGDSVLVM-SN 438

Query: 454 SCGFYRLINLLLEEF 468
             GF  +   LL   
Sbjct: 439 G-GFGGIHQKLLNRL 452


>gi|119773493|ref|YP_926233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           amazonensis SB2B]
 gi|119765993|gb|ABL98563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           amazonensis SB2B]
          Length = 443

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 148/448 (33%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHD--FILHAVQKG 64
           L A     +  + +  +  + +DSR   P      A F        G D  +++ A    
Sbjct: 16  LGATGLSVVRFLARKGIVPLVMDSRRQPPGMDVLSAEFPDVTLVTGGFDCRYLVQAQSII 75

Query: 65  AG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               + V+T  V +   + I V G  DV     +L           ++AITGS GK+T  
Sbjct: 76  ISPGIAVDTPEVRAAMDMGIEVIG--DV-----ELFAREIQDMAPCVLAITGSNGKSTVT 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++     +  K  A  G+          L  +    +  + EL    L      TH + 
Sbjct: 129 TLVGEMARADNKAVAVGGNIGVP-----ALELLGKGAELFVLELSSFQL----ETTHSLH 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                   I+  H+  ++ +E    AK  ++    ++     N DD       A +    
Sbjct: 180 CIAGTCLNISEDHMDRYTDLEAYRQAKLRLY---PQSKLSVYNRDD-------AATIPDE 229

Query: 244 IKTIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +   SFG    +  D+ L   K     S +   L           IG H   N+L  + 
Sbjct: 230 PRNTVSFGLGVPELDDWGLMDGKIYHGASEIMNLLD-------VALIGSHNHANLLAAMA 282

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +  +K    F    G   R     +      +++S   N  +  AA++ L+
Sbjct: 283 LCEAAGISREAMVKVAKEFT---GLAHRCELVASHNSIAWVNDSKATNVGATVAALNGLA 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +      G  I + G   + G   +     L        +SH+   G     +      +
Sbjct: 340 E----HLGDIILIAGGDGK-GADFEPLRGALG------AVSHLITLGRDGDKIAVLKEGA 388

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V    TM       ++    GD+V++
Sbjct: 389 IKV---ATMAEAVEKAKALANPGDIVLL 413


>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. W3-18-1]
 gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           W3-18-1]
          Length = 439

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 128/375 (34%), Gaps = 59/375 (15%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             K  +I ITGS GK+T   ++   L       A  G+          L  +  + +  +
Sbjct: 106 DRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGVP-----ALDLLSENAEIFV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH +    +    +   H+  +S ++    AK  ++     + +I 
Sbjct: 161 LELSSFQL----ETTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSII 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD+    +  +          SFG +     +  +W  C  +        G+S  + 
Sbjct: 214 FNRDDAL--TIPTEPMNQN-----SFGLAPP---EGDEWGICDSKI-----YHGRSEIMP 258

Query: 285 H---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H   N+L  + +V  +  D     K    F    G   R      +G  T 
Sbjct: 259 ITEVSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTFT---GLSHRCEVVGIKGGVTY 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  +  AA+  LS       G  I + G   +  + S      L E LS   +
Sbjct: 316 VNDSKATNVGATVAALDGLSD----HLGDIILIAGGDGKGADFSP-----LVEPLSK--V 364

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--------KSSN 453
           +H+   G     +      +I V   ++M        +    GD+V++          SN
Sbjct: 365 THLITLGRDGNKIAALKEGAIKV---DSMAAAVAKAAALATSGDIVLLSPACASLDMYSN 421

Query: 454 SCG----FYRLINLL 464
                  F  L+ LL
Sbjct: 422 FMARGDDFRNLVELL 436


>gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 858

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 131/388 (33%), Gaps = 56/388 (14%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------- 155
               +  ++A+TG+ GKTTT  +++  L+          +   +I               
Sbjct: 465 HENGRIPLVAVTGTNGKTTTVRLISHLLAQNGLRVGMTNTDGVYIAGQRIDTGDCSGPKS 524

Query: 156 -----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIA 207
                   DVD  + E   +  G +R      R  +AV+T +    HL     + +E++A
Sbjct: 525 ARNVLQHPDVDAAVLE--TARGGMLREGLAFDRCDVAVVTNVGSGDHLGLNYITTVEDLA 582

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  I + +   G   LN  D     +     A    +I  F   ++         Q  
Sbjct: 583 VLKRVIVQNIASDGVAVLNAADPIVVSMARHCSA----SIIFFAMDRHHPVMATHLAQGR 638

Query: 268 EQSWME----VQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              ++E    V  +GK         + +   G      +N++ +   V  L    +T   
Sbjct: 639 RAVYVEGDHLVAAEGKVQHQMALSDIPISRRGTIGFQIENVMASAAAVWALGVGWETIKL 698

Query: 316 ALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            L+ F +  +    R+     +G   + D  Y  NP ++ A +  ++ +    + R + +
Sbjct: 699 GLASFINNNDNALGRFNLFSYRGATVIAD--YGHNPDAIAALVQAVASMPS--KRRTVVI 754

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHV 424
            G     G+          E+L      +V L           G  +  L++ L  +   
Sbjct: 755 SG----AGDRRDEDIRQQTEILGNA-FDNVVLYQDQCQRGRADGEVLALLREGLAHATRT 809

Query: 425 HYSETMDG---LFLFIQSSLVDGDVVVV 449
                + G          +L +GD+ ++
Sbjct: 810 ESIAEIQGEFLAIDTAMDTLGEGDLCLI 837


>gi|56476242|ref|YP_157831.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin
           opimelate ligase [Aromatoleum aromaticum EbN1]
 gi|56312285|emb|CAI06930.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-
           diaminopimelate ligase [Aromatoleum aromaticum EbN1]
          Length = 451

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 126/368 (34%), Gaps = 39/368 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +     ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTTSMLAWMLEDAGLE---PGFLVGGVPGNFGVSARLTDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   FS +  I +    +   +  +G I  N 
Sbjct: 162 YDTAFCDKRSKFVHYRPRTAILNNLEFDHADIFSDLAAIETQFHHLVRTIPASGRIIANA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
           D+   + + A+     ++    FG               +++     +L+ + +  V   
Sbjct: 222 DEESLKRVAARGCWSELE---WFGDGAQ-----WSAAAGADEREAVFRLRDEIVGSVAMP 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      AI +L+ F    G  +R          T+ D+ +
Sbjct: 274 MSGSHNRSNALAAIAAARHVGVTPAQAIASLAGF---RGIKRRMEVRGQVRGITVYDD-F 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++   +  L +  P   GR +AVL      M  +G +       LA+        
Sbjct: 330 AHHPTAIALTVDGLRRREPA--GRILAVLEPRSNTMK-LGVMKDRLPESLAQ------AD 380

Query: 403 HVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
            V+    G          P        + +D L   + ++   GD V+V  SN  GF   
Sbjct: 381 RVYCYANGLGWDVAGALAPLGERGATYDDLDRLVADVAAAARPGDHVLVM-SNG-GFGGV 438

Query: 458 -YRLINLL 464
             RL+  L
Sbjct: 439 HDRLLAAL 446


>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 437

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 108/344 (31%), Gaps = 42/344 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A I A+TG+ GK+T   +    L         +G+  + +                + E+
Sbjct: 105 APITAVTGTNGKSTVTTLTASMLGDGAVAAGNLGTPLSAV--------ADSGARRLVVEV 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L          R  +A +  + P HL      E   +AKA + E L          
Sbjct: 157 SSFQL----VWAPTFRASVATVLNLTPNHLDYHGSFEAYRAAKARLIERLAPGDVAV--- 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                E             + +F   +++AD+++             V+++         
Sbjct: 210 -WPVGEGAVDAIAIPRGVEVRTFSATARDADYRVEHGALVGPDGRTLVRVEELGRRAP-- 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
               H   NML    +     A+++ A +    F    G   R +    +G  T +D+S 
Sbjct: 267 ----HDVANMLAAWALAEASGAELERARRVAREF---RGLAHRLQVVAVRGGLTYVDDSK 319

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +  AA+            R + + G   +     +    D+AE ++      V  
Sbjct: 320 ATTPEAAVAAVRSFD--------RVVLIAGGRTKGTGFERL--RDVAERIA-----GVVA 364

Query: 407 SGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G      + D       +  + +MD          + G VV++
Sbjct: 365 IGESAHRVVADLGDAVPWIVEANSMDEAVAVASERALPGTVVLL 408


>gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
           putrefaciens 200]
          Length = 439

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 121/348 (34%), Gaps = 47/348 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             K  +I ITGS GK+T   ++   L       A  G+          L  +  + +  +
Sbjct: 106 DRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGVP-----ALDLLSENAEIFV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      TH +    +    +   H+  +S ++    AK  ++     + +I 
Sbjct: 161 LELSSFQL----ETTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSII 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD+    +  +          SFG +     +  +W  C  +        G+S  + 
Sbjct: 214 FNRDDAL--TIPTEPMNQN-----SFGLAPP---EGDEWGICDSKI-----YHGRSEIMP 258

Query: 285 H---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H   N+L  + +V  +  D     K    F    G   R      +G  T 
Sbjct: 259 ITEVSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTFT---GLSHRCEVVGIKGGVTY 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  +  AA+  LS       G  I + G   +  + S      L E LS   +
Sbjct: 316 VNDSKATNVGATVAALDGLSD----HLGDIILIAGGDGKGADFSP-----LVEPLSK--V 364

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +H+   G     +      +I V   ++M        +    GD+V++
Sbjct: 365 THLITLGRDGNKIAALKEGAIKV---DSMAAAVAKAAALATSGDIVLL 409


>gi|92114314|ref|YP_574242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
 gi|118595648|sp|Q1QVG5|MURD_CHRSD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91797404|gb|ABE59543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
          Length = 455

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 109/351 (31%), Gaps = 31/351 (8%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                  ++ I AITGS  K+T   +L           A  G+        L L     D
Sbjct: 103 ALFVRECRSPIAAITGSNAKSTVTTLLGEMARESGWKTAVGGNLGTP---ALDLLDESPD 159

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  + EL    L      T  +    A    ++  HL     ++   +AK  IF G   
Sbjct: 160 AELFVLELSSFQL----ETTPWLGADTAAFLNLSEDHLDRHGDMQGYRAAKQRIFRGARH 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                +N +D                T     G+    D    +W      + M V    
Sbjct: 216 ---AVVNAEDPATWPDAPSCAVTRFTTDMPESGEWGIVDHDGERWLAQGRAAIMPV---- 268

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H   N L  L + + L    +       V     G   R    + +  
Sbjct: 269 ----GQVRMPGRHNHANALAALAMGAHLGLSREAM---CRVLERFPGLPHRGEFIVEREG 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  +  AAI   + I    EGR I + G   +  + S      LAE L+ 
Sbjct: 322 VRWINDSKGTNVGATLAAI---AGIGSDLEGRLILLAGGDGKGADFSP-----LAEPLA- 372

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++     + G     L+ AL   + V     +       ++    GD V++
Sbjct: 373 HHAREAIVFGRDAERLEQALSARLPVTRVADLAAAMQRARTIARAGDTVLL 423


>gi|109948221|ref|YP_665449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715442|emb|CAK00450.1| murE [Helicobacter acinonychis str. Sheeba]
          Length = 447

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 133/391 (34%), Gaps = 57/391 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L+   +      K  II +TG+ GKTTT  ++   L  + K  A +G+    I    
Sbjct: 51  LAILDFNELKNYFDFKIKIIGVTGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKR 110

Query: 152 ---------TLAR--------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                    TL          M ++ ++ I E+    +  ++     +   + ++T I  
Sbjct: 111 IKEKGLTTPTLLELYGDLEEAMRLECEYFIMEVSSHAI--VQERIAGLNFALKILTNITS 168

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGIK---TIYS 249
            HL     IE    AK   F   +      +N D  ++ F  + A ++AL  K    I +
Sbjct: 169 DHLDFHKSIENYRDAKNSFF---KDESLKVINRDETNALFNPINAHTYALDKKAHLNIQA 225

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM-TLGIVSILTA 308
           F  + +    L   +     +  E+ L      +    +G +   N+L   LG+  +   
Sbjct: 226 FSLNPSISASLCYQQDLRNPNVKEMAL------MHSPLLGRYNLYNILAGVLGVKLLTQL 279

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++T    L  F+  +G   R   A ++    L+   +      M+              
Sbjct: 280 PLETITPLLENFYGVKG---RLEIAHSK---PLVVVDFAHTTDGMQQVFESFKAQ----- 328

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPR 420
            +  A+ G     G+  ++    +  + S Y    +  S           +  +   +  
Sbjct: 329 -KITALFGA---GGDRDKTKRPKMGAIASCYAHKIILTSDNPRSENEEDIIKDILKGIND 384

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              V   +      L    +L D +V+++  
Sbjct: 385 PSKVIVEKDRKKAILNALENLKDDEVLLILG 415


>gi|196232259|ref|ZP_03131113.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
 gi|196223627|gb|EDY18143.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
          Length = 461

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 116/362 (32%), Gaps = 41/362 (11%)

Query: 124 EMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +LT  L S     A  IG    ++G   +L     D    + E            +  +
Sbjct: 124 SLLTWILKSAGLNPAYMIGGIAKNLGQGASLH----DARHVVLEGDEYDTAFFDKRSKFL 179

Query: 183 R--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P + ++  I   H   F  ++ I  +   +   + ++G + +N DD     +     
Sbjct: 180 HYLPELVIVNNIEFDHADIFDNLDAIKLSFRRLLNIVPESGMVLINGDDKNCIDVAENCR 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++     G S NA   ++     +  S   +             +G +  +N  M +
Sbjct: 240 AQLVE----VGFSANASRHIKDVAYDAHGSAFTLL----DTRFTIQMVGEYNVRNAAMAI 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    +    KA++ F   +   +R          T+ID+ +  +P +++  +  L
Sbjct: 292 SAAHFYGIPLSAIAKAVAAFEGVK---RRQEVRGEVRGMTVIDD-FGHHPTAIRETLRGL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH--------------IDLAEVLSLYNISHVWL 406
               P    R  A+          +   H                +A +  L   + +  
Sbjct: 348 RHQYPS--RRLWAIFEPRSNTTRRAVFQHELPAALGEADGVILAQVARMDQLAADNRL-- 403

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  + D         Y   +  +   ++  + + DV+V+  SN  GF  +   LL+
Sbjct: 404 --DPAKVVADIAATGRPAFYEPDVTAIIARLKPLVKERDVIVIL-SNG-GFGGIHERLLK 459

Query: 467 EF 468
           E 
Sbjct: 460 EL 461


>gi|301300388|ref|ZP_07206590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851990|gb|EFK79672.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 437

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 109/339 (32%), Gaps = 44/339 (12%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IGVP + +A+     D  + EL    L  I        P +AV+T I  AH+      E
Sbjct: 126 NIGVPASQVAQEATSKDTIVTELSSFQLLGITE----YHPKVAVLTNIYEAHIDYHGTRE 181

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              +AK  I     +     +N+D+  ++ L  +S A  I      GKSK   +    + 
Sbjct: 182 NYVNAKMRIVMNQTEDDYFVVNWDNEEWQELSQRSKAR-IVPFSRLGKSKGGAYVADGYL 240

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E   M V              G H  +N L  + +  I     +   + L+ F    
Sbjct: 241 FYKEDKIMPVD--------DIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFS--- 289

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +           ++S   N  + + A++  +          + +L    + G  
Sbjct: 290 GVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGFNN--------PVVLLAGGLDRGFT 341

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLV 442
            +     L        +  + + G     +  A   +      +T D             
Sbjct: 342 FEKLEPSL-----KNKVHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSN 396

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
           +GDV+++    +S             F   +  L +E  
Sbjct: 397 EGDVILLSPACASWDQWPTFEVRGDKFIEAVEKLAKELE 435


>gi|237799288|ref|ZP_04587749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022144|gb|EGI02201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 448

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 127/355 (35%), Gaps = 30/355 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA IIAITGS  K+T   ++     +  K  A  G+        L   
Sbjct: 96  LSGDIELFARYAKAPIIAITGSNAKSTVTTLVGDMAKAAGKRVAVGGNLGTPALDLL--- 152

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D+D  + EL    L      T  +   +A +  I+  H+  ++G+     AK  IF
Sbjct: 153 --SDDIDLYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYTGLPAYHQAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    +  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRDLKVRGAHNQANALAALALGHAVGLPFEAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N   + AA++ +  +    +G+ + + G   +  + S      + E
Sbjct: 315 EHDGVDYYNDSKATN---VGAALAAIKGLGSDIDGKLVLIAGGDGKGADFS-GLRAPVTE 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     +   L  ++ +   +T+        S    GD V++
Sbjct: 371 HCRA-----VVLLGRDAELIAQVLGDAVPLIRVDTLQAAVERSASLAQGGDAVLL 420


>gi|260435255|ref|ZP_05789225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
 gi|260413129|gb|EEX06425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
          Length = 461

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 118/383 (30%), Gaps = 38/383 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G VV+   +     +L   V    + +    ++ +A     +   I ITG+ GKTT   +
Sbjct: 71  GAVVIGPGIPWDHPTL---VQLRSEGIKVRGEMDLAWDALQQIPWIGITGTNGKTTVTHL 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGV--PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           L+  L +   T    G+             +      D+ + EL    +         V 
Sbjct: 128 LSHVLEASGLTAPMGGNMGLSAADLAFQIGSGATPRPDWLVMELSSYQI----EAAPAVA 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I + TT+ P HL     +E   + K  +   LE++     N DD        +     
Sbjct: 184 PKIGIWTTLTPDHLERHGSLEAYRAIKRGL---LERSECALFNADDPDLR----QQRRSW 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +   +    D Q        E   +                G H  QN+L+     
Sbjct: 237 DRGTWVSSEGARPDDQPADLWIDDEGM-VRNNATRLFAADALAMPGRHNRQNLLLVAAAS 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +         AL  F        R          ++ ++S   N  + + A+  +   
Sbjct: 296 LKVGLSPQQIADALRTFPGVP---HRLEKLGTLAGASVFNDSKATNYDAAEVALRAVQ-- 350

Query: 364 SPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALP 419
                G  + + G   + G+     +  H     ++       V+ +G   LA L  A  
Sbjct: 351 -----GPVVVLAGGQTKQGDAGGWLEQLHTKACSLI-------VFGAGADELASLAKAAG 398

Query: 420 RSIHVHYSETMDGLFLFIQSSLV 442
               +     ++      ++++ 
Sbjct: 399 YPGELQQCPELESAVNLAETAVQ 421


>gi|15673572|ref|NP_267746.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. lactis Il1403]
 gi|281492169|ref|YP_003354149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|30316118|sp|Q9CF91|MURD_LACLA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12724595|gb|AAK05688.1|AE006389_8 UDP-N-acetylmuramoylalanine D-glutamate ligase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281375840|gb|ADA65334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|326407055|gb|ADZ64126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 450

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 138/398 (34%), Gaps = 51/398 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DF L     G      +  MV    +L+IPV         L  L   A       II IT
Sbjct: 72  DFALMVKNPGIRY---DNPMVERAEALNIPVI----TEVELAYLISEA------PIIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  ++   L++  ++    G+          +A      D  + EL    L  
Sbjct: 119 GTNGKTTTTTLIADILNADGQSAKLSGNIGFP---ASEVAEKASASDTLVMELSSFQLMG 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I       RP IA+IT +  AHL      +   +AK  I E +     + LN++      
Sbjct: 176 ID----SFRPKIALITNLFSAHLDYHGSQKAYEAAKWRIQENMTSDDFLILNFNQEKCRN 231

Query: 235 LKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           L  K+ A    T+ +F   +  N  +        +++  MEV              G H 
Sbjct: 232 LADKTKA----TVLAFSTKEKVNGAYSKDGKIYFNDEYIMEVS--------ELSLPGEHN 279

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  +    +     +  ++ L+ F   +    R +         + ++S   N  +
Sbjct: 280 LENALAAIVASKLQGTKNEAIVEVLTSFAGVK---HRLQYLGEIDGRKVYNDSKATNILA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + A+S           +   + G   + G   +    DL       ++  + + G    
Sbjct: 337 TQKALSGFD------NSKLWLLAGG-LDRGNGFEELEKDL------QDLKGMVVFGQTAN 383

Query: 413 ALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+  A   +I V  SE +      I      GD +++
Sbjct: 384 KLRLTAEKLNIPVFDSENVAKALEEILPQTQAGDTILL 421


>gi|253568794|ref|ZP_04846204.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
 gi|62900586|sp|Q8A256|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
          Length = 444

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   + A +I ITGS GKTTT  ++     S        G+    + + +         
Sbjct: 95  FAGRYTDAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGKSLALQV----AEEHH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219
           D+ I EL    L  +    +  R +IAV+  I P HL  +   ++    AK  I +    
Sbjct: 151 DYYIIELSSFQLDNM----YNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTT 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQG 278
                   DD   +   AK         ++  K   A   +   +   +E     ++   
Sbjct: 207 DDAFIFWNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNME--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H   N L      ++     +   KALS F   E    R         
Sbjct: 264 ---QEELALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVE---HRLEKVARVRG 317

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S   A+  ++        + + +LG     G+   + + ++ +++  
Sbjct: 318 IDFINDSKATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVRE 365

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
              + V+L G H   L     R  + V   +T M             G+ V++
Sbjct: 366 KCSALVYL-GLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|116873466|ref|YP_850247.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742344|emb|CAK21468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 455

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 97/300 (32%), Gaps = 35/300 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSEQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QS 270
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E   S
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGDIMFDDEVIGS 270

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              + L G+           H  +N+L ++ +   L    +  +  L  F   E    R 
Sbjct: 271 RDSILLPGE-----------HNLENILASVAVAKTLGVTNEEIMHVLETFKGVE---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +  +        ++S   N  + ++A+              + +L    + G        
Sbjct: 317 QFVVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL-- 366

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 ----LPFFKNVKSLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESEPGDIILL 422


>gi|159900026|ref|YP_001546273.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893065|gb|ABX06145.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 443

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 140/414 (33%), Gaps = 51/414 (12%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + ++   + +    +IPV    D    L +   A R       +A+TG+ GKTTT  M
Sbjct: 67  SALPLDHIEIVAAHQAAIPVLTRHD----LWREWSAERPT-----LAVTGTHGKTTTTAM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +       T      +     VP   A         + E       E       + P 
Sbjct: 118 LAVIFKHCGYTPG----FLIGAEVPALGASAAWGQGPLVLEA-----DEYARTFLALSPA 168

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT +   H+  +    E  +A  E F        + L  DD   + + A   A+   
Sbjct: 169 IGIITNLDWDHVDIYPSQAEYDAAFRE-FAIKPSLQHLVLCGDDLGTQRVLADVPAIRC- 226

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                G +++ D++    +   +    E +    + M V     G H  +N L+ L    
Sbjct: 227 -----GLTEHNDWRATAVQATPDGMLFELISPAAEPMTVQLAVSGEHNVRNALLALAAAH 281

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
               D+  A+ A++ +    G  +R+      G   + D+ Y  +P  ++A ++   +  
Sbjct: 282 SYGIDLAVAVAAIAHYQ---GAARRFEPKGQVGAVRVFDD-YAHHPVEIRATLAAARKRF 337

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A L D       +     DL  + ++Y       S     A 
Sbjct: 338 PAQRIVAYFQPHTFSRLEAFLADF-----QTAFEQADLVRIGAVYGARE--TSKGDPTAQ 390

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS---CGFYRLINLLL 465
             A  +  +      +D  F  +   +  GDVV+   +      G  RL+  L 
Sbjct: 391 IVAGMQHPNALAVGDLDQAFEQLLRDVQAGDVVLTLGAGDGVVVG-ERLVAALR 443


>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 466

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 124/350 (35%), Gaps = 42/350 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFE 166
           I+A+TGS GKTTT  +++    +  +     G+          L  M  +V   D  + E
Sbjct: 121 IVAVTGSDGKTTTTTLISKFYEAAGRRVHLGGNIG------AALLPMLPEVSPDDVAVVE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     ++    P+IAV+T + P HL +   ++E   AK  I    ++     L 
Sbjct: 175 LSSFQL-----ISMHQSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLG 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y++     ++       +           A  +       +E   +   L  K +++   
Sbjct: 230 YENEISRSMQKDCKGKQVWFTRLHETDNGAFLREDGMLCMAENGVVTPFLAQKDVKLR-- 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L     V      V+      S F   E R +  R        T  ++S 
Sbjct: 288 --GLHNIENLLAAAAAVWG-EVPVEAIQLVGSSFTGVEHRIEPVRVL---DGVTYYNDSI 341

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P    A +    Q       + I + G     G      +  LA  +   ++ ++ L
Sbjct: 342 GTSPTRTIAGLRSFDQ-------KVILIAG-----GYDKHIPYEPLAPEI-TAHVKNLVL 388

Query: 407 SGFHVLALKDALPRSIHVH-------YSETMDGLFLFIQSSLVDGDVVVV 449
            G     ++ A+    + H       +++ M       ++    GD++++
Sbjct: 389 MGATGPRIEKAVREDPNFHEAELPIQHADNMQHAVELARACAKPGDIIIL 438


>gi|330501922|ref|YP_004378791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
 gi|328916208|gb|AEB57039.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
          Length = 450

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 123/346 (35%), Gaps = 30/346 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I+AITGS  K+T   ++    ++  K  A  G+          L  +  DV+  
Sbjct: 107 RHAKAPIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALDLLADDVELY 161

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T  +   +A    I+  H+  +SG+     AK  IF G  +   +
Sbjct: 162 VLELSSFQL----ETTDQLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRGARQ---V 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD+    L A        T + FG  K  DF+     + + +  +  +        
Sbjct: 215 VINRDDALSRPLIADQ-----VTSWEFGLGK-PDFKRFGLLEENGEKSLAFRFDALLPVS 268

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +   +   ++  +   +      G   R +    +G  +  D
Sbjct: 269 ELKIRGAHNQSNALAALALGHAVGLPMEAML---ATLRQFAGLPHRCQWVGERGGVSYYD 325

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N   + AA++ +  +     G+ + + G   +  + S +    +A          
Sbjct: 326 DSKATN---VGAALAAIEGLGADIAGKLVLIAGGDGKGADFS-ALKAPVARFCRA----- 376

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     L  AL  +  +     +D            GD V++
Sbjct: 377 VVLLGRDAELLAAALGDAAPLVRVTILDEAVQRSSELAEAGDAVLL 422


>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9605]
 gi|118595700|sp|Q3AHP0|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9605]
          Length = 461

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 110/367 (29%), Gaps = 33/367 (8%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A +     VV+   +     +L   V    + +    ++  A     +   I ITG+ G
Sbjct: 64  DAWRDNLDAVVIGPGIPWDHPTL---VQLRSEGVQVRGEMDTAWDALQQIPWIGITGTNG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTT   +L+  L +   T    G+             +      D+ + EL    +    
Sbjct: 121 KTTVTHLLSHVLEAAGLTAPMGGNIGLSAAELACQIGSGAKPRPDWLVMELSSYQI---- 176

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V P I + TT+ P HL     +E   + K  +   LE++     N DD       
Sbjct: 177 EAAPAVAPKIGIWTTLTPDHLERHGSLEAYRAIKRGL---LERSECALFNADDPDLR--- 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  +   +  +   +  + D Q        E   +           V    G H  QN+
Sbjct: 231 -QQRSSWNRGTWVSSEGAHPDNQPADLWIDDEGM-VRNNTTRLFAADVLAMPGRHNRQNL 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+                 AL  F        R          ++ ++S   N  + +  
Sbjct: 289 LLVTAAALEAGLSPQQIADALRTFPGVP---HRLEQLGTLAGASVFNDSKATNYDAAEVG 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  +        G  + + G   + G+ S        + L     S + L G     L  
Sbjct: 346 LRAVQ-------GPVVVLAGGQTKQGDASGWL-----KQLQSKACS-LILFGAGADELAS 392

Query: 417 ALPRSIH 423
               + +
Sbjct: 393 LAKAAGY 399


>gi|187933718|ref|YP_001884427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B str. Eklund 17B]
 gi|226711899|sp|B2TIC9|MURD_CLOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187721871|gb|ACD23092.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 458

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 129/382 (33%), Gaps = 63/382 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA I  ITGS GKTTT  +++  L          G+    +   +   +     D  + E
Sbjct: 116 KAKIYGITGSDGKTTTTTIISKMLQEEGYKTWVGGNIGTPLFAQIEEIK---SEDRVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +T  +   IAV T +AP HL     ++E   AK  IF   + T T+ +N
Sbjct: 173 LSSFQL-----MTMNLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIFLYQDATNTLIVN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++      KA++  +    +  F   +     L++     +     + L GK +    +
Sbjct: 228 RENEITYGFKAEAKGV----VREFSSKRE----LKEGAYYKDGI---LYLSGKEVCKKDN 276

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H  +N L    I +     ++   K    F+  E    R             ++
Sbjct: 277 IVIKGMHNVENYLAAF-IATKNDVSIENMKKVAESFNGVE---HRCELVREINGVKYYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  ++P    A +    +       R I + G     G         LA     Y I  +
Sbjct: 333 SIASSPTRTLAGLKAFDK-------RVILIAG-----GYDKHLLFEPLANEGYPY-IKEL 379

Query: 405 WLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV---------- 447
            L G     +KD            I++    T++      Q+    GD++          
Sbjct: 380 ILLGQTKEKIKDVFKELEASKGIKINISEVSTLEEAVKKAQNLARQGDIITLSPACASFD 439

Query: 448 -----VVKSSNSCGFYRLINLL 464
                ++       F  ++N L
Sbjct: 440 MFPNFMI---RGNKFKEIVNEL 458


>gi|238855274|ref|ZP_04645593.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|260664633|ref|ZP_05865485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932433|ref|ZP_06337858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|313471909|ref|ZP_07812401.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|238832166|gb|EEQ24484.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|239529167|gb|EEQ68168.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|260561698|gb|EEX27670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303382|gb|EFA95559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
          Length = 456

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 126/388 (32%), Gaps = 48/388 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L IP+    +   AL+              + +TGS GKTTT  + +
Sbjct: 83  IPYENPMVQKASELKIPIIT--EPEIALSASEA--------PFVCVTGSNGKTTTVMLTS 132

Query: 128 IA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L+        +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 EIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKD---DVLVVEISSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A I  I P HL     +E   +AK  +            N+D    + + A+  A  
Sbjct: 186 PKVAAIVDIYPTHLDYHKTMENYIAAKLNVTRFQTSDEYFIANFDQ---KEILAQEQATT 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +F  + ++       +    QS   +++            G H  QN ++ + I 
Sbjct: 243 KAKIQTFSMNDHSASYFVGDEYLESQSEKIMKIAD------IKLPGKHNLQNSMVAIAIS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++ A+       LS F    G   R +         + ++S + N  +   AI   S+ 
Sbjct: 297 KLMGAENSDIQAVLSTF---AGARHRLQYVTTLNNVKIYNDSKSTNIEAATVAIKAFSEP 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
                     ++G   + G             L   ++  V L G     L DA  ++  
Sbjct: 354 E--------VLIGGGLDRGFTFDPL-----VPLLKEHVKAVVLYGETRYLLADAARKAGI 400

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    T+             GDV+++
Sbjct: 401 KEIKIVNTLKEAVPTAYKLTQPGDVLLL 428


>gi|325475430|gb|EGC78611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Treponema denticola
           F0402]
          Length = 482

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 137/377 (36%), Gaps = 46/377 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           SKA I+A+TGS GK++T   L   L  +       G+       PL+           + 
Sbjct: 111 SKAPILAVTGSKGKSSTVSALYYGLKKLGYNAFLGGNITVS---PLSFFEETSCDTPVVL 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L +++    L    IA+IT I P HL+ +  +E+  + K  I+E +++   +  
Sbjct: 168 ELSSWQLADLKNKKLLKP-KIAIITPIMPDHLNWYGTMEKYVADKKIIYENMDEADYLIC 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+DD + ++   ++ A     ++ + + K A  ++   + +  E        +   +   
Sbjct: 227 NFDDGWGKIFAEETRA----NVFWYSEKKPAKKYRGVFFNKNQEGLCNLSDGERLLLSKD 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADV------------------DTAIKALSVFHPKEGR 326
               G  + QN+L   G   +L   +                  + +           G 
Sbjct: 283 AKVPGLKLKQNVLNA-GFALLLYQKIHKPENLKGNDILKDNNIKEQSEFIRKFMDEYSGI 341

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R             +++    P +  AA+    +         I + G     G    
Sbjct: 342 EHRLEFFYETNGIKFYNDTAATIPEASAAALEAFDKPP-------ILICG-----GTNKN 389

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVD 443
              I LAE  +L   S   L+G     L   L     + Y    +++D L   ++ +   
Sbjct: 390 LNFIPLAEKANLAK-SLYLLAGTGTDLLIPLLKEK-SIEYNGPFDSLDSLLFSLKENAEK 447

Query: 444 GDVVVVK-SSNSCGFYR 459
           GDVV++   + S G ++
Sbjct: 448 GDVVILSPGAASFGLFK 464


>gi|312136565|ref|YP_004003902.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224284|gb|ADP77140.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 510

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 127/427 (29%), Gaps = 91/427 (21%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDF 162
               ++ + G+ GKTTT  M+   L     T        S        + + +   D +F
Sbjct: 109 INMPMVGVAGTDGKTTTTNMIYYLLKDKYSTLVFSSLQDSLVIEGLAEIVVNQDYKDKEF 168

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +FEL     G IR +   +   + V+T + P HL  F G  +       + + + K G 
Sbjct: 169 AVFELP---HGTIR-MVKGLELSVGVLTNLTPDHLDEFDGYWDYVKRNFLVKDLVHKNGL 224

Query: 223 IFLNYDDSFFELLK------------AKSHALGIK-TIYSF-GKSKNADFQLRKWKQCS- 267
           +  N DD     LK             K   +  K  +YSF GK    D   +       
Sbjct: 225 LVFNSDDPIIYKLKNSVNKEIVFYGLGKPQKIKYKSKVYSFDGKKPKPDVTAKDIVLEGL 284

Query: 268 EQSWMEVQLQG------------------------KSMEVVHHG--IGYHMAQNMLMTLG 301
           + S  +  +                             E        G    +N L T+ 
Sbjct: 285 DGSKFKAVVNEIPTVICENCGELLCKCGEFKRRYVGPFEKNIKLQIPGIVNIENSLATIT 344

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L   +    + L  F   +G   R+          +  ++   NP SM+  I  L 
Sbjct: 345 VGLALGLKMKYIKEKLENFKGIKG---RFEKIGEIDGVKIYMDA-AHNPESMEKVIGNLD 400

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GF----HV 411
                 +GR I  L +   +    +     +  +LS      +  S      G       
Sbjct: 401 -----VKGRLIISLDNPDTLTTRDK---FRIGRILSK-KADILICSAKNETTGEIDWNAA 451

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV------------VKSSNSCGFYR 459
             +         +  S   D +   I      GD+++            VK         
Sbjct: 452 EEVARGAKECKTIITSNVRDSILKAI-ELSKKGDLILHIGPGVVNAYDNVKG-------D 503

Query: 460 LINLLLE 466
           +++ + +
Sbjct: 504 ILDAIKK 510


>gi|213585604|ref|ZP_03367430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 320

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 128/337 (37%), Gaps = 42/337 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A I+AITGS GK+T   ++     +        G+          L  +  D +  
Sbjct: 23  REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP-----ALMLLDADRELY 77

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E   K   
Sbjct: 78  VLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE---KAKV 130

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    ++        +   SFG +         +    +Q    ++++G+ + 
Sbjct: 131 CVVNADDALTMPVRG-----ADERCVSFGVNMG------DYHLNRQQGETWLRVKGEKVL 179

Query: 283 VV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            V      G H   N L  L +   +     +++KAL+ F    G   R++ AL      
Sbjct: 180 NVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFT---GLAHRFQLALEHNGVR 236

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 237 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDR 286

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           I  ++  G     L    P       +ETM+     +
Sbjct: 287 I-RLYCFGRDGAQLAALRPE--IAQQTETMEEAMRLL 320


>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
 gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
          Length = 458

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 114/350 (32%), Gaps = 45/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L S        G+  N +   +         D  + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYNMLKSEGYKTWVGGNIGNPLFANI---EEMTKADKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I+        + A++T ++P HL     +EE   AK  IF+   +   + LN
Sbjct: 173 LSSFQLMTIKE-----DMNCALVTNLSPNHLDIHKDMEEYVDAKKNIFKYQNENDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+     L  ++       +  F   +     +             +  +  ++E    
Sbjct: 228 KDNKITNDLVNEAKG----KVKQFSIKEE----IHNGAYFKNDKLFILDKEVCALEE-IK 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L    +V+     ++   K    F   E R +  R           ++S 
Sbjct: 279 LKGMHNVENLLAAFCLVNE-DVSINNMRKVAISFTGVEHRCEFVR---ELDGVKYYNDSI 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHV 404
            ++P    A +    +         I + G            HI    +       I  +
Sbjct: 335 ASSPTRTIAGLRAFEK-------PVILIAGGY--------DKHIPFEPLAEEGYDKIKAL 379

Query: 405 WLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L+G     +K A        P  I ++  E  +      +     GD+V
Sbjct: 380 ILTGVTKEKIKKAFDNVIENKPYKIPIYMVERFEEAIYKAKEISKAGDIV 429


>gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 514

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 163/501 (32%), Gaps = 77/501 (15%)

Query: 6   TFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  ++L  ++ H + +             ++ +S+ ++    FF           ++  A
Sbjct: 8   TVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFCKGNFRE---AYLADA 64

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118
            Q+GA   V          +++IP   V ++  +++ L+ A     ++    IA TG+ G
Sbjct: 65  QQRGASGYVSEKQYH----NVTIPGIIVKNIQKSMSLLSAAFFGFPQNNLPTIAYTGTKG 120

Query: 119 KTTTKEMLTIALSSIK-KTYACIGSYNN------------HIGVPLTL---ARMPVDVD- 161
           KTT+       L  +  +  A   + N              +  P +L     M   V  
Sbjct: 121 KTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQN 180

Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEG 216
                I E+      + R   + +  ++ V   I+P H+         +    K ++   
Sbjct: 181 NMTHLIMEVSSQAYKKQR--VYNLHYNVGVFLNISPDHIGRNEHPTFADYLHCKEQL--- 235

Query: 217 LEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNA-------DFQLRKWKQCSE 268
           L  +    +N D D   ++          + I+ + +  +        DF+ +       
Sbjct: 236 LVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLS 295

Query: 269 QSWMEV-------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           ++ +++       +  G          G +   N +      +++ A        LS   
Sbjct: 296 ENKIQLISVSDKAKRLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGLSH-T 354

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR + Y    +      I   Y  N  S+ + +  L + SP  +G  I + G     
Sbjct: 355 TVPGRMEIYSTKQHG----TIYVDYAHNYGSLHSVLDFLKKQSP--DGNVIVITGS---T 405

Query: 382 GELSQSFHIDLAEVLSL-YNISHVWLSG---FHVLALKDAL-----PRSIHVHYSETMDG 432
           G+        L + ++   N++++            + D +     P  +   Y      
Sbjct: 406 GDKGIDRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTS 465

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
                      GD+VVV  K 
Sbjct: 466 AIQKAVLESKQGDLVVVAGKG 486


>gi|121998786|ref|YP_001003573.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
 gi|121590191|gb|ABM62771.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
          Length = 454

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 131/359 (36%), Gaps = 22/359 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M T  L         +       G     AR+     F + E   
Sbjct: 105 VVAIAGTHGKTTTASMATWILERCGLDPGYL--IGGAPGFSERSARLGTGSPF-VVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                      +V  +P + ++  +   H   +  +E IA+        +   G + +N 
Sbjct: 162 YDTAFFDKRAKVVHYQPRVLLLNNLEFDHADIYPDLEAIATQLHHAIRTVPANGRVLING 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     + A+     ++ I   G   + D+++   +       +       +++     
Sbjct: 222 DDPHLPSVVARGCWSRLERI---GFGADNDWRIDADEAAEHAVLVHRGTPLGALQP--PQ 276

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    +   +   AD  TA+KA++ F    G  +R           +ID+ + 
Sbjct: 277 PGRHNLANAAAAVAAAASAGADPTTAVKAINEF---PGVRRRLELRGCVDGVEVIDD-FA 332

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P+++ A ++ L+        R +AVL        L    H  LAE L   + + V   
Sbjct: 333 HHPSAVAATLNALAT----PGRRLLAVLEPRSNTMRLGIHRH-QLAEALGHADQAFVLTP 387

Query: 408 GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                ++ +AL P    +H +  +  L     +    GD +VV  SN   F  +   LL
Sbjct: 388 PDLPWSVSEALAPLGERLHTAAEVSDLARLALAKARPGDCLVVM-SNG-AFGDIHERLL 444


>gi|332994935|gb|AEF04990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas sp. SN2]
          Length = 460

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 141/423 (33%), Gaps = 52/423 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +  ++   S P + +D++L                 +I ++G+
Sbjct: 67  IGNAMSRGNSAVEYV--LNRNLPYTSGPQWLLDNLLK-------------DRWVIGVSGT 111

Query: 117 VGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  M+   L  S       IG    + GV   +   P    F + E         
Sbjct: 112 HGKTTTSSMVAWILEYSELNPGYLIGGVPENFGVSARIGESP----FFVIEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP   VI  +   H   F+ +  I +    +   + + G I      +   
Sbjct: 168 DKRSKFVHYRPKTLVINNLEFDHADIFADLAAIQTQFHHLVRMVPENGLILTP---NHTP 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHM 292
            ++              GK  +A+          + S   V    + +  V    +G H 
Sbjct: 225 AIEETLKKGCWTPRQCLGKEWSAEL------INKDGSQFNVLFNNEIVGAVQWELLGQHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFTLIDESYNANP 350
             N LM +         +  AI ALS F   + R +         +G    + + +  +P
Sbjct: 279 VDNALMAIAAAHHAGVTLHDAIAALSSFKNVKRRMEIKGVVTLAAEGKPVTVYDDFAHHP 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS- 407
            ++   I  L      G  R +AVL    E    +     H +     S      V++  
Sbjct: 339 TAIATTIDGLR--KKVGNARILAVL----EPRSNTMKMGVHKNTLAH-SWQAADAVYVYE 391

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLI 461
             G      + A            ++ +   +QS +  GD +++  SN  GF     R++
Sbjct: 392 PQGLDWSLKEAAAASPAPTTVFNDVENIVKVLQSEVRPGDHILIM-SNG-GFEGIHNRVL 449

Query: 462 NLL 464
            +L
Sbjct: 450 RVL 452


>gi|224368382|ref|YP_002602545.1| MurD [Desulfobacterium autotrophicum HRM2]
 gi|223691098|gb|ACN14381.1| MurD [Desulfobacterium autotrophicum HRM2]
          Length = 458

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 147/433 (33%), Gaps = 56/433 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAIK--GPH--YDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           ++ ++ DSR +  Q+    ++  G     +GH   +   + GA LVV +  +   +    
Sbjct: 40  IDVVATDSRPLG-QDVTAPLEALGVRCETNGHR--VETFE-GAALVVTSPGIPLDMAFFE 95

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                   V G L  L      R    ++AITG+ GKTT   +++  L     +    G+
Sbjct: 96  RARAKKISVTGEL-DLFFYFLER---PLVAITGTNGKTTVTTLVSEMLKRSGLSVFTGGN 151

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +   L   +     D  + E+    L        +  P +AV+  IA  H+  ++ 
Sbjct: 152 IGTPLVEFLESGQTE---DVVVAEVSSFQLD----AATMFAPRVAVLLNIAEDHMDRYTA 204

Query: 203 IEEIASAKAEIFEGLEKTGTIFLN----YDDSFFELLKAKSHALGIKTIYSFGKSK--NA 256
               A +K  +     +     +N     D      +KA         + +FG+ K  NA
Sbjct: 205 FSAYADSKWALLGNQSENDIAVVNQTLPIDSDRKRTIKA--------VLLTFGEDKACNA 256

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               R     ++     + L       V    G H  +N+        +  A       A
Sbjct: 257 AIDTRSIAISTQDQKFVLDL------SVTRLRGAHNRENIAAAALAALLAGACQAGIQGA 310

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F    G   R             ++S   NP +++ A+            R I +LG
Sbjct: 311 LDDFS---GLAHRTEYVTAINGVDYYNDSKGTNPHAVEGALRGFD--------RVILILG 359

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
              +  + S      L  +++   +  V L G     +K  L  ++ +  + +M  +   
Sbjct: 360 GRSKGTDFS-----CLVPLINQR-VKTVILMGEAAREIKAVLGSTVEILEAGSMADVVSV 413

Query: 437 IQSSLVDGDVVVV 449
                  GD V++
Sbjct: 414 ANRIATHGDTVLL 426


>gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 515

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 132/411 (32%), Gaps = 46/411 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 I+ D+R++         KG  +   +F+    ++G    V   D         +
Sbjct: 38  DVPFTHITYDTRTVREGTLLVC-KG-RF-RPEFLDGLKERGLVAYVSERDFS---DHTEV 91

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACI 140
           P   V+D   AL+ L+ A     +++ T+I ITG+ GKTTT       L++      A  
Sbjct: 92  PGLIVNDARKALSLLSAAFYGMPQNELTVIGITGTKGKTTTAYFTQAILNAYSNGRCALF 151

Query: 141 GSYNNHIGVPLTL------------ARMPVDV-----DFGIFELGMSHLGEIRFLTHLVR 183
            S +N +     +             RM  +       + + E+        R   H + 
Sbjct: 152 SSVDNCLDGHTYVESELTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNR--VHGLT 209

Query: 184 PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +     I+P H+S+      E+    K ++           LN D    +L++  + A
Sbjct: 210 FDVGAFLNISPDHISDIEHPTFEDYLYCKRQLAYHARA---FVLNADADHADLIREDAQA 266

Query: 242 LGIK----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
            GI      + +     NA    R     +E S   +   G  + E      G     N 
Sbjct: 267 AGIPLADFALRTDDAPTNATLTAR--PSNAEHSAFSIAANGHDLGEFSLSLAGDFNYANA 324

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +        D+A           G   R          T+    Y  N  S++A 
Sbjct: 325 LAAVALAHEAGVPFDSAAMHAMESVHVPG---RMELFTGTDGDTVAIVDYAHNYTSVRAL 381

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           I  + Q     + R   V G     G  +     ++ E         V+ +
Sbjct: 382 IDFVEQRYGERKPRITLVAGS---AGNKAFDRRQEIVEAAQDRIARFVFTA 429


>gi|147678198|ref|YP_001212413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pelotomaculum
           thermopropionicum SI]
 gi|189082913|sp|A5D147|MURD_PELTS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146274295|dbj|BAF60044.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 455

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 38/350 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +++ I+A+TG+ GKTTT  ++              G+  + +     + R   D D  + 
Sbjct: 108 TRSPIVAVTGTNGKTTTTTLIGEIFKDAGMNTLVGGNIGSPLI--AEVERYGPD-DVIVA 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L          RP + V+  I P HL     +   A+ KA +F          L
Sbjct: 165 EVSSFQL----ETASTFRPKVGVVLNITPDHLDRHGTMGNYAATKARMFANQGPGDFAVL 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---- 281
           N DD     LKA   +     +  F + K       K         +   L G       
Sbjct: 221 NCDDPLAASLKAGVRS----RVIFFSRRKE-----LKEGVWVSGGMIVASLNGHREVVCR 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L  +     +  + ++    L  F   +G   R            
Sbjct: 272 SDELGLPGAHNLENALAAVAAAKAMGIESNSLAGTLRRF---KGVAHRLEFVAEVDGVRY 328

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   NP +   A+           G  I ++      G   + F   + E   +   
Sbjct: 329 INDSKGTNPDAAIKALES--------YGEPIVLIAGGKNKGSDFREFARKVKEKAKV--- 377

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     + +A       ++ Y++      L  +     GD+V++
Sbjct: 378 --LVVLGQSAGLIAEAARAEGFENILYADGFREAVLLARRVARPGDIVLL 425


>gi|254786999|ref|YP_003074428.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
 gi|259509791|sp|C5BP36|MURD_TERTT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|237684910|gb|ACR12174.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
          Length = 453

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 117/348 (33%), Gaps = 30/348 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                +  ++ ITGS GK+T   ++    +         G+    +     L  +  + +
Sbjct: 107 FLREVQVPVVGITGSNGKSTVTALMAAVGAKAGFKTCAAGNIGLPV-----LDALQENAE 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L  +          +A +  ++  H+  ++   +   AK  I+ G +   
Sbjct: 162 LYILELSSFQLESVSRPGL----TVACMLNVSEDHMDRYNRFVDYCMAKQRIYFGAQN-- 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N DD   +       A        F  SK  +     +   ++   +         
Sbjct: 216 -VVYNIDDKLTQPPIVDGVARR-----GFSLSKPIEEGESAFYFSADTGNLCAAKDNLIN 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N+L    +   L           +      G   R +    +   T 
Sbjct: 270 IDQIKIFGRHNVANVLAVFAMADALNITRAA---TCAAVQEFSGLDHRCQWVAKKRGVTF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  + +AAI+ LS        R + + G     G+   +      +++   ++
Sbjct: 327 INDSKATNVGAAQAAIAGLSA----SFKRILLIAG-----GDGKDANFFSFGKLVD-AHV 376

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + + L G    A+ D +  +  V  ++TM        SS  +GD+V++
Sbjct: 377 AVLILMGRDAGAIADCVSDTTPVVQAQTMTEAVEVAFSSAEEGDLVLL 424


>gi|16804075|ref|NP_465560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes EGD-e]
 gi|224501164|ref|ZP_03669471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL R2-561]
 gi|30316084|sp|Q8Y5M1|MURD_LISMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16411506|emb|CAD00114.1| murD [Listeria monocytogenes EGD-e]
          Length = 455

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQIADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    N+  + + G     +        I VHY + ++            GD++++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|319937184|ref|ZP_08011591.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
 gi|319807550|gb|EFW04143.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
          Length = 436

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 117/364 (32%), Gaps = 50/364 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I I G+ GKTTT  M         KT   IG    H            D  + I E    
Sbjct: 103 IGIAGTHGKTTTTGMAYHLFKDYNKTSVLIGDGTGHAV---------KDSHYFIAETCEY 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               + +     +P  AVI  I   H+  F  IE+   +  +    ++   T+ +  DD 
Sbjct: 154 QDHFLHY-----QPTYAVINNIEMDHVDYFQSIEQYVQSFEQFANQVK--DTVVVWGDDP 206

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIG 289
               L         K +  FG S   D   +     +   + +V + G           G
Sbjct: 207 HLPHLN------YTKRVLKFGISDKNDVIAKNIINNNHGLYFDVYIHGDLFGHFALPFYG 260

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HM  + L  + +  +   D D   K LS F   + R        N     +  + Y  +
Sbjct: 261 MHMLYDSLAVITLGYLENMDADYIQKRLSTFDGVKRRYTVQEVGNN-----VYVDDYAHH 315

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY---------- 399
           P ++K  I       P  E   +A+     +       F  + AE ++L           
Sbjct: 316 PTAIKYVIEATRSRYPGKE--IVAIF--QPDRFSRGLRFAKEFAESMNLADYPFLVHFPE 371

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSC-GF 457
           N          +  +   LPR+I +H  E  +     +       DVV +  SS     F
Sbjct: 372 NAKKEAGIDIDIHEIGQYLPRAIVIH--ED-EDAVKLLAEH---DDVVFLFMSSKDIYKF 425

Query: 458 YRLI 461
             ++
Sbjct: 426 EDML 429


>gi|121611886|ref|YP_999693.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556526|gb|ABM60675.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 890

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 133/402 (33%), Gaps = 53/402 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V  A+ +   A     +  ++A+TG+ GKTTT  ++    ++         +   ++ 
Sbjct: 478 RNVAQAIVERLYAHGDDGRIPVVAVTGTNGKTTTARLIAQLFTAQGLRVGMTNTDGVYVN 537

Query: 149 VPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-A 195
                +             +  +VD  +FE   +  G +R      R  +AV+T I    
Sbjct: 538 GRQIDSGDCSGPKSARNVLLHPEVDAAVFE--TARGGILREGLGFDRCQVAVVTNIGTGD 595

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           HL     + ++++A  K  I + +   G   LN  D     +           +  F   
Sbjct: 596 HLGLNYITTVQDLAVLKRVIVQNVAPGGYAVLNAADPIVAAMAPACPG----KVIYFAGG 651

Query: 254 KNADFQLRKWKQC-------------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++    +    Q              SE SW E  +  + + V  +G       N++  +
Sbjct: 652 RHHPVMVTHRAQGHRTVYVDGDCIVASEGSWRE-TIHLRDVPVTRNGTIAFQVDNVMAAV 710

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +     T  + LS F             ++    TLI + Y  NP +M+A  S +
Sbjct: 711 AAAWGVGLPWQTLRRGLSGFVNDSDNAPGRFNIMDYRGATLIAD-YGHNPDAMRALASAV 769

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFH 410
             I      RR  V+      G+         + +L       V L           G  
Sbjct: 770 EAIDAASGKRRSVVISA---AGDRRDEDIRQQSAILG-AAFDEVILYQDAAQRGRSDGEV 825

Query: 411 VLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L+  L  +    + E + G         + L  GD+ +V
Sbjct: 826 MALLRQGLIGAARARHIEEIHGEFNAIDTALARLQPGDLCLV 867


>gi|77409926|ref|ZP_00786534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77171465|gb|EAO74726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 300

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 37/299 (12%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +   D D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I 
Sbjct: 15  QAADDKDILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQ 70

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +  +  + LN++    + L   + A    TI  F  ++  D    + KQ        +
Sbjct: 71  NQMSSSDFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------L 118

Query: 275 QLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +G+++  V      G H  +N L T+ +  +         + LS F   +    R + 
Sbjct: 119 FYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVK---HRLQS 175

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  +  ++S + N  + + A+S            ++ ++    + G        D+
Sbjct: 176 LGKVHGISFYNDSKSTNILATQKALSGFDNT-------KVILIAGGLDRGNEFDELIPDI 228

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV 449
                   + H+ + G     +K A  ++  V YS+ +D              GDV+++
Sbjct: 229 ------TGLKHMVVLGESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 280


>gi|108804332|ref|YP_644269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
           xylanophilus DSM 9941]
 gi|118595689|sp|Q1AVX1|MURD_RUBXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108765575|gb|ABG04457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 440

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 117/345 (33%), Gaps = 43/345 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            + A+TG+ GKTT  +M    L      +A  G+    +   L   R        + E+ 
Sbjct: 103 RVAAVTGTNGKTTVVDMARHILRVAGVAHAVAGNSWRALTGCLEEVR---RAGVLVLEVS 159

Query: 169 MSHLGEIRFLTHLVRP--HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              L       HL  P   +A +  + P HL+  S  EE A  K  +F G        L+
Sbjct: 160 SFQLH------HLPPPGFEVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGDLALLS 213

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD           A     +   G+ +     +R  +      ++       + E    
Sbjct: 214 ADDPICRRAAGGLRA----EVVLVGEGETG---VRDGRLLLRGEFL-------AGERELG 259

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L      + L A ++   +AL  +  K     R +    +G  T ID+S 
Sbjct: 260 FAGGHNLKNALFAAAAAARLGAGLEAIREALRGYRLKP---HRMQVVAEEGGVTYIDDSK 316

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NPA++ AA+  L           + +LG     G   ++   ++   L       V  
Sbjct: 317 ATNPAAVAAALLSLGGRPA------VLILG-----GSEKETDFEEVLPHLG--GCRAVVC 363

Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+D L       V  +  +       +     GD V++
Sbjct: 364 QGEAGPRLRDFLSERWGGEVVLAGDLASAVEAARRLARPGDAVLL 408


>gi|255037244|ref|YP_003087865.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
 gi|254950000|gb|ACT94700.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
          Length = 456

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 123/349 (35%), Gaps = 36/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A +IAITGS GKTTT  +    L +        G+    IG     A      ++ + 
Sbjct: 110 TDAKLIAITGSNGKTTTTLLTYHLLKTAGLNVGLAGN----IGDSFAWAVAEKQFEYYVL 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        P+I+++  I P HL  +    +    +K  I    + +    
Sbjct: 166 EISSFQLDNI----IDFHPYISLLLNITPDHLDRYGYDFQNYVDSKFNIIRNQQASDYFI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              +    +    K +    +   S   +  A   L      S       ++ G ++E+ 
Sbjct: 222 YYKESEVIQKELEKRNPAVGRIEVSLDNALEAGSYLENGTLVS-------KINGNALEIA 274

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H A N L  + +  +L  D +   + L  F     R ++       G  T 
Sbjct: 275 FAELPVKGPHNAINALSAISVAQLLGIDPEKIREGLKSFTNAPHRLEQVEVI---GGVTY 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S+  A+    Q         I + G + +  + SQ       E L    +
Sbjct: 332 INDSKATNVDSVFYALGSFDQ-------PVILIAGGVDKGNDYSQ------IEALVKSKV 378

Query: 402 SHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G   + L+      +  ++ ++ +       +   V GDVV++
Sbjct: 379 KGLIVLGKDPVKLETYFAGKVPQIYATDDVRDAVNKGREWGVPGDVVLL 427


>gi|116512399|ref|YP_809615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122940065|sp|Q02XX9|MURD_LACLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116108053|gb|ABJ73193.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 449

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 153/426 (35%), Gaps = 56/426 (13%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DF L     G      +  MV    +L IPV         L  L   A       II IT
Sbjct: 72  DFALMVKNPGIRY---DNPMVERAEALKIPVI----TEVELAYLVSEA------PIIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  ++   L++  ++    G+          +A+     D  + EL    L  
Sbjct: 119 GTNGKTTTTTLIADILNADGQSAKLSGNIGFP---ASEVAQKAQATDTLVMELSSFQLMG 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I       RP IA+IT +  AHL      E   +AK  I E +     + LN++      
Sbjct: 176 IDTF----RPKIALITNLFSAHLDYHGSQEAYEAAKWRIQENMTADDFLILNFNQEKCRK 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  K+ A    T+ +F   +    ++        + + + +   ++ E      G H  +
Sbjct: 232 LADKTKA----TVLAFSTKE----KVSGAYVNEGKIYFKDEFIMEASE--LSLPGDHNLE 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +    +  A+ +  I+ L+ F   +    R +         + ++S   N  + +
Sbjct: 282 NALAAIVASKLRGAENEAIIEVLTSFAGVK---HRLQYLGEIDGRKVYNDSKATNILATQ 338

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+S           +   + G   + G   +    DL       ++  + + G     L
Sbjct: 339 KALSGFD------NSKLWLLAGG-LDRGNGFEDLEKDL------EDLKGMVVFGQTADKL 385

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-------FYRLINLLLE 466
           +    + +I V  S+ +      I      GD +++  S +C        F    +L +E
Sbjct: 386 RLMAEKLNIPVFASQNVATALKEIMPQTQVGDTILL--SPACASWDQYKTFEERGDLFIE 443

Query: 467 EFPAIQ 472
            F +++
Sbjct: 444 AFESLK 449


>gi|330955586|gb|EGH55846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 122

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+GE ++  H ++    +   +S 
Sbjct: 1   DTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGEWAEQGHREVGAYAAG-KVSA 55

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           ++  G  +     A     H ++  +   L   + +       +++K S S     ++  
Sbjct: 56  LYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQNPDTTLLIKGSRSAAMEHVVAA 113

Query: 464 L 464
           L
Sbjct: 114 L 114


>gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 353

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 105/337 (31%), Gaps = 45/337 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV 
Sbjct: 35  FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVV 87

Query: 87  GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY------- 137
            V D+  A++   +A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNT 147

Query: 138 ----ACIGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                            L L  M  +         I E+        R   + +   + V
Sbjct: 148 TLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDR--VYGLTFDVGV 205

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E    +  + +N     F  L  +        
Sbjct: 206 FLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFSFLADQVA------ 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  ++  +      Q +       + +G+ +       IG+   +N +        
Sbjct: 257 -----DQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLR 311

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           L A +    K ++      GR +      +     ++
Sbjct: 312 LGASLADIQKGIAK-TRVPGRMEVLTMTNHAKVLLIM 347


>gi|319941793|ref|ZP_08016115.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804726|gb|EFW01593.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
          Length = 508

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 143/401 (35%), Gaps = 44/401 (10%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKT 120
           GA   V       S     IP+ G       L    +A   R++     +I ITG+ GKT
Sbjct: 96  GAAASVCA-----SARKAGIPIVG----EIELFAQELAYLKRTQGYAPKVIGITGTNGKT 146

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLT 179
           TT  + T   ++        G+   +    L+ A     + D  + EL    L      T
Sbjct: 147 TTTTLTTKMAAAAGLYAVAAGNIGPNAVAELSKAEAAGALPDIWVLELSSFQL----ETT 202

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKA 237
           H +    A +  I   HL     IE  A AK  IF          +N +D     EL K 
Sbjct: 203 HTLNCTSAALLNITEDHLDWHGSIEAYAHAKGRIFA---PDTVRVVNREDPLVMAELEKV 259

Query: 238 KSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKS-----MEVVHHGIG 289
                     ++FG +   K  +  L      S+  W+ ++ Q +       E      G
Sbjct: 260 DDREHSAARCFTFGATKPQKEGELGLMMAAHASQGYWLGLRDQMEVDVLFLPEFELLIRG 319

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L  LG+++           A+ V     G   R            ID+S   N
Sbjct: 320 RHNAMNALAALGLITGAGI---ETRPAIGVLRTYRGEPHRVELVRTIEGRDFIDDSKGTN 376

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             ++ AA+  L+      +GRRI +L  M   G+        LA+ L    ++   L G 
Sbjct: 377 VGAVAAAVCGLAA-----QGRRILIL--MG--GDGKGQDFTPLAKELKGR-VAFAALIGR 426

Query: 410 HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +++A+ P  +     +T++    ++      GD +++
Sbjct: 427 DAAKIREAVSPAGVATETFKTLEAAEDWLWEKSRPGDQILL 467


>gi|302671221|ref|YP_003831181.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
 gi|302395694|gb|ADL34599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
          Length = 457

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 118/349 (33%), Gaps = 38/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +IAITG+ GKTTT  ++   + +       +G+           A    +    + E
Sbjct: 112 KGKMIAITGTNGKTTTTTLVGEIMKAHFGKAYVVGNIGVSYAES---ALEMDESCVTVGE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L            +++ I  I P HL+    +E  A  K  I     K  T  LN
Sbjct: 169 ISSFQL----EAVDNFHANVSAILNITPDHLNRHHTMECYAQMKENITHNQTKEDTCVLN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---- 282
           YD+ +     A+  A     +  F   +       +     +   + +   G +M+    
Sbjct: 225 YDNEYTRDFGARCPA----KVVFFSSKEK-----LEDGFYLDGEDIYMATAGNAMKIMNI 275

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              + +G    +N++  + +   +   + T +  +  F   E    R      +      
Sbjct: 276 HDMNLVGTCNVENVMAAIAMSLAMDVPLATILSVIRNFKAVE---HRIEFVATKRGVDYY 332

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP    AAI  +  +      +   ++G   + G     +     + + L    
Sbjct: 333 NDSKGTNPD---AAIQGVKAM-----CKPTILIGGGYDKGNDYDEWIESFGDTIKL---- 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
            + L G     + +   +    +Y   +T +    F   S   GD V++
Sbjct: 381 -LVLIGQTRQKIAECCDKHGFSNYVFKDTYEEALEFCTESAQKGDAVLL 428


>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 467

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 49/376 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +++    +  +     G+    +   L   R     D  + EL  
Sbjct: 121 IVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAALLPMLPEVR---PEDVAVVELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     ++    P IAV+T + P HL +   ++E   AK  I           L Y++
Sbjct: 178 FQL-----ISMHQSPKIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQNPPCRAVLGYEN 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGI 288
                ++       +           A  +      C +E   +   L  K +++     
Sbjct: 233 EISRSMQKDCKGRQVWFTRLHDTDNGAFLRKEDNMLCMAEDGVVTPFLAQKDIKLR---- 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+L     V      V+   K  S F   E R +  R           ++S   
Sbjct: 289 GLHNIENLLAAAAAVWG-EVPVEAIQKVGSTFTGVEHRIEPVRTL---DGVLYYNDSIGT 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P    A +    Q       + I + G     G      +  LA  + + ++  + L G
Sbjct: 345 SPTRTIAGLRSFDQ-------KVILIAG-----GYDKHIPYEPLAPEI-VAHVKDLVLMG 391

Query: 409 FHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFY-- 458
                ++ AL         ++ + +++ M       +++   GD++++  +S S   Y  
Sbjct: 392 ATGPRIEKALREDPGFNEAALPIQHADNMQHAVELARAAAKPGDIIILSPASASFDLYPN 451

Query: 459 ---------RLINLLL 465
                     ++N L 
Sbjct: 452 FEVRGREFKNIVNALK 467


>gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 467

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 90/262 (34%), Gaps = 25/262 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   + +  +     G+    I         P    F + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKASGRDMQLGGNIGTAIL----TLEPPQANRFYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     +E  A+ K  +      + T  +
Sbjct: 168 ECSSYQID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVA---ASDTAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYS-----FGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             DD + E +  + +  G+  +        GK   AD     W Q  E   +       S
Sbjct: 221 GVDDDYCEAIADRLYRDGVHVVRISKERHLGKGYFADGAKLLWSQDGEIDEI------AS 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E +    G H AQN L  +     +   ++      +      G   R     ++G   
Sbjct: 275 LEGIGSLRGAHNAQNALAAVVACLSVGLSLEEI---DAGLKSFPGLAHRMEQVGHRGKVL 331

Query: 341 LIDESYNANPASMKAAISVLSQ 362
            +++S   N  +   A+S   Q
Sbjct: 332 FVNDSKATNAEATAPALSSFLQ 353


>gi|84496501|ref|ZP_00995355.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383269|gb|EAP99150.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 972

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 158/493 (32%), Gaps = 86/493 (17%)

Query: 29  GISID-SRSIAPQEAFFA-----IKGPHYDGHDFILHAVQK------GAGLVVVNTDMVA 76
           GIS+D +    P     A     + G    G DFI   +        GA   V       
Sbjct: 410 GISVDRTFDAHPDNVEIAEEAARMVGLDVAGIDFICPDIASPVRETGGAICEVNAAPGFR 469

Query: 77  SIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                ++  P F    V+  L          S+  I+A+TG+ GKTTT  M+   +  + 
Sbjct: 470 MHTHPTVGEPQFIAKPVVDLLFAPGS----PSRVPIVAVTGTNGKTTTSRMIAHIMKGVG 525

Query: 135 KTYACIGSYNNHIGVPLTL---------ARM---PVDVDFGIFELGMSHLGEIRFLTHLV 182
           +      +    +   L           ARM      VDF + E+     G +R      
Sbjct: 526 RKVGMTSTDGIVVDERLVFKADASGPKSARMVLQNPRVDFAVMEVA--RGGILREGLGYD 583

Query: 183 RPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           R  +AV+T +AP HL       +E++A  KA I E + + G   LN DD     ++ +  
Sbjct: 584 RNDVAVVTNVAPDHLGLRGINTVEQLADVKAVIVEAVPRNGFAVLNADDPLVRKMRKRCS 643

Query: 241 ALGIKTIYSFGKSKNADF-------------QLRKWKQCSEQSWMEVQLQGKSME--VVH 285
                +I  F  S                  +    +   +   + ++   ++M+    H
Sbjct: 644 G----SIVWFTMSPPGSAVREFVDDHCRRGGRAIVLEPSDKGDMIVIRHGRRAMQLAWTH 699

Query: 286 HGIGYHMAQNMLMTLGIVSILTAD------VDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                     M      ++   A       +    + L  F             +N    
Sbjct: 700 LLPATFGGTAMFNVANAMAAAGAAFAVGTGLHEIRQGLRTFSTSYYLSPGRMNQVNVNNI 759

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEG-------RRIAVLG--------DMCEMGEL 384
            +I + Y  N   MK     + + +    G        R+AV+         DM E+G +
Sbjct: 760 DVIVD-YCHNAPGMKVLGDFVERYADAKAGSSELGKISRLAVIATAGDRRDEDMRELGSI 818

Query: 385 SQSFHIDLA-----EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---LFLF 436
           + + H D+      E L          +G      K A+         E +         
Sbjct: 819 A-AHHFDVMVVREDERLRGRKPGE--TAGLVAEGAKAAMADGARCRQVEVVTEELSAVRH 875

Query: 437 IQSSLVDGDVVVV 449
           + +    GD+VVV
Sbjct: 876 VMARANPGDIVVV 888


>gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 185

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 2/143 (1%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGI 164
           +        L   R        +
Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAV 157


>gi|257457291|ref|ZP_05622462.1| UDP-N-acetylmuramate--alanine ligase [Treponema vincentii ATCC
           35580]
 gi|257445213|gb|EEV20285.1| UDP-N-acetylmuramate--alanine ligase [Treponema vincentii ATCC
           35580]
          Length = 483

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 134/415 (32%), Gaps = 49/415 (11%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK- 134
            +    +IP     + LGA +  + +A          I G  GKTTT  +    L  +  
Sbjct: 92  HAAAEQNIPRMSYPEALGAFSAHSYSA---------GIAGVHGKTTTTGIAGTLLKDLNL 142

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                 GS  ++ G   T+        + + E       E +       P   V+T++  
Sbjct: 143 SVSVLAGSAVSNFGGGCTVIN---GSKYFVAE-----TCEYKRNFLFFHPQKIVLTSVES 194

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKS 253
            H   +   E+I +A  +  + L +   +    DD+        + +     + + +GK+
Sbjct: 195 DHQDYYPQYEDILTAFLQYIDRLPQFNELIYCSDDAGAREAAKLTFSSRPDLVLTPYGKT 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL------T 307
              D+ ++       QS   +   G   E      G H   N    + +V  L       
Sbjct: 255 AYGDYGIKTLGIKDGQSVFSLH--GFDGEFRIGIPGEHSVLNAAAAVALVIGLIKQERKE 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                     +     +G  +R            +D+ Y  +P ++   +  + +  P+ 
Sbjct: 313 VTAADLASIRNSLASFKGAKRRSEILGEVNGILFMDD-YGHHPTAIYKTLKGIHEFYPN- 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------------L 414
             RRI +   M      + +   + A+  S      V L   +  A              
Sbjct: 371 --RRI-IADFMSHTYSRTAALLPEFADAFSY--ADTVILHKIYASAREKYNGSINGKTLY 425

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS-CGFYRLI-NLLLEE 467
           +    R   VHY E +     F++  L   D+ +   +       R + N LLE+
Sbjct: 426 EQMKKRHKKVHYFEEIMDAKDFVEKELRPNDLFITVGAGDNWKLGRAVYNDLLEK 480


>gi|332298510|ref|YP_004440432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           brennaborense DSM 12168]
 gi|332181613|gb|AEE17301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           brennaborense DSM 12168]
          Length = 511

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 129/353 (36%), Gaps = 32/353 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++A IIA+TGS GK++T   +   L +        G+       PLT           + 
Sbjct: 133 TQAPIIAVTGSKGKSSTVSAIHYGLCAAGFEAFLGGNITVS---PLTFLDKTDGTTPVVL 189

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L ++R    L++PH+AV+T I P H + +  +E+  + K  I+   + +     
Sbjct: 190 ELSSWQLADLRGR-RLLKPHVAVLTKIVPDHQNWYGSMEKYVADKKLIYADQDASCWTVC 248

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---------L 276
             DD + +   A+++     T+  +G  K    +   W   + + ++ +           
Sbjct: 249 AADDEWGDAFAAETNG----TVLRYGGGKLPAAECGAWIGKNGKGYVRLPAARFSGGRFA 304

Query: 277 QGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            G+  E        G HM  N L    ++S+L    +     L+ +   + R + +    
Sbjct: 305 DGEPHEVLDTLAVPGSHMKTNALNAALVMSLLGVAPEQTETILARWPGIQHRLEYFHTWQ 364

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G      + YN    S        +  S         + G     G       + LA 
Sbjct: 365 LPGAKGRSVKFYN---DSAATVPEAAAAASQAFGKPVHLLCG-----GTDKNLDFLPLAR 416

Query: 395 VLSLYNISHVW-LSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVD 443
            L     + V+ L+G     L   L ++  + Y    E++  L   ++ +L  
Sbjct: 417 TLRSQPPASVYALAGTGTDKLLPLL-KASDIRYEGPFESLAQLLSALKRNLQQ 468


>gi|117922177|ref|YP_871369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. ANA-3]
 gi|117614509|gb|ABK49963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           ANA-3]
          Length = 439

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 155/448 (34%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       AF    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                + ++T  V +   + I V G  DV   L    +A R   K  +I ITGS GK+T 
Sbjct: 71  IISPGIAIDTPEVRAALDMGIEVIG--DV--ELFAREIADR---KPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L       A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMLREAGMAVAVGGNIGIP-----ALDLLTENADIFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               +    +   H+  +S ++    AK  ++     + +I  N DD+    +  +    
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSIIFNRDDAL--TIPTEPMNQ 229

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
                 SFG +     +  +W  C  + +       + M +     IG H   N+L  + 
Sbjct: 230 N-----SFGLAPP---EGDEWGICDSKIY---HGHSEIMPITEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V  +  +     K    F    G   R      +   T +++S   N  +  AA+  LS
Sbjct: 279 LVYAVGVEKQVMAKVARTFT---GLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G   +  + S      L E L    ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAGGDGKGADFSP-----LVEPL--TKVTHLITLGRDGNKIAALKEGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V   ++M             GD+V++
Sbjct: 385 IKV---DSMAAAVAKAAELATSGDIVLL 409


>gi|285017564|ref|YP_003375275.1| hypothetical protein XALc_0769 [Xanthomonas albilineans GPE PC73]
 gi|283472782|emb|CBA15287.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 458

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 143/416 (34%), Gaps = 42/416 (10%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAI 113
           ++   ++     V+V      ++   ++ V  V D   A    A     +       +A+
Sbjct: 54  YLPEHIEADCAQVIVG----NALSRGNLAVEAVLDAGRAYISGAQWLSEQVLPGRETLAV 109

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMS 170
            G+ GKTTT  +LT  L S  +     IG      GV   L            + E    
Sbjct: 110 AGTHGKTTTTSILTWLLQSAGREPGFLIGGVAEDFGVSARLGGPVAAPQRPLFVVEADEY 169

Query: 171 HLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                   +  V  RP +A++  +   H   F  +  I      +   +   G + +N +
Sbjct: 170 DTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPHRGRLIVNGE 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHG 287
           D+    + A         +  FG     D+  R     ++ S   V   G+ + VV    
Sbjct: 230 DAHLREVLAMG---CWTPVERFGFDPGFDWSARLL--AADGSRFAVLHAGQQLGVVEWSL 284

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L  L     +       I AL+ F   +   +R          T+ D+ + 
Sbjct: 285 LGRHNVMNALAALAAAHAVGVAPAQVIPALARFRSVK---RRLEVLGQAQGITVYDD-FA 340

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSF--HIDLAEVLS-L 398
            +P +++   + L  +       RI V   M        +G  + +    +++A+ +  L
Sbjct: 341 HHPTAIR---TTLEGLRAKVGTARIVV--AMEPRSNSMRLGAHADALAPSLEVADAVVFL 395

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                 W +G  + A++         H +  +D L   +Q+    GD VV   SN 
Sbjct: 396 QRPELAWDAGKVIAAVR------GQAHAATDVDALLAALQTQARAGDHVVFM-SNG 444


>gi|319944584|ref|ZP_08018852.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Lautropia mirabilis ATCC
           51599]
 gi|319742121|gb|EFV94540.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Lautropia mirabilis ATCC
           51599]
          Length = 461

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 121/352 (34%), Gaps = 23/352 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++ + G+ GKTTT  +L   L +  +     IG    +  V   L R P    + + E  
Sbjct: 105 VMGVAGTHGKTTTASLLAWILQAAGREPGFLIGGVPGNFPVSARLGRKP----YFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I   
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLGAIETQFHHLVRTVPGQGRIIWP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
            D    + + A+      + + + G      +      + ++ +   +     +   V  
Sbjct: 221 SDSEALQRVLARGCWSQTEALGAGG------WHASDVTEEADATVFTLWRGDVEQGRVRL 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +  +     +      +I+AL+ F    G  +R       G  T+ID+ 
Sbjct: 275 PLAGEHNRANAIAAIVAAEHIGITPTESIEALAAFQ---GVRRRLEVRGTVGGVTVIDD- 330

Query: 346 YNANPASMKAAISVLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++   I+ L    Q   H  GR +AVL +       + +    L   L   ++ 
Sbjct: 331 FAHHPTAIATTIAGLRARMQAGSHPGGRLLAVL-EPRSNTMRTGTLKAQLPGSLQDADLV 389

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +  G    A     P    V     M  L   I ++   GD V+V  SN 
Sbjct: 390 FCYAGGIDWDAQAALAPLGERVAVFRDMLALEAAILAAARPGDQVLVM-SNG 440


>gi|90411962|ref|ZP_01219970.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
 gi|90327220|gb|EAS43592.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
          Length = 452

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 136/411 (33%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNSNLRYTSGPQWLQEFLLHDRWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCGYE---PGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  ++ I      +   +   G I              ++  +G  +
Sbjct: 181 LVMNNLEFDHADIFDDLKAIQRQFHHLVRTVPSNGRILA----PKGVESIQQTLDMGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F    +  +  +  KQ ++ S  +V L G  +  V    +G H   N LM +     
Sbjct: 237 ELEF-TGDDGHWIAK--KQMTDGSVFDVYLDGLMIGTVRWDLVGDHNVSNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D   +AL+ F   +   +R           + D+ +  +P +++  +  L     
Sbjct: 294 VGVTPDLGCEALATFINTK---RRLELKGEVKGVKVYDD-FAHHPTAIELTLGGLRA-KV 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVL-----ALKDALP 419
             E R +AVL    E    +    +   ++  +L    +V++     +      + D   
Sbjct: 349 GDEQRILAVL----EPRSNTMKLGVHKGDIAPALNAADYVFIYQPDTIPWSVNEIADGCS 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +         +D L   I +   DGD ++V  SN  GF  + + LL    A
Sbjct: 405 QPAATDI--DLDKLVDKIVTEAKDGDTILVM-SNG-GFGGIHDKLLAALAA 451


>gi|187926156|ref|YP_001892501.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665644|ref|YP_002984003.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727910|gb|ACD29074.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867671|gb|ACS65331.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 855

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 134/393 (34%), Gaps = 46/393 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A++G+ GKTTT  ++T  L+S        G+   +I     
Sbjct: 455 EAIVSTMFADGDDGRIPVVAVSGTNGKTTTVRLITHLLASSGLRMGMTGTDGVYIQGQRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +  DVD  +FE   +  G +R      R  +AV+T +    HL  
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFE--TARGGLLREGLAFDRCDVAVVTNVGEGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--------SHALGIKTIYS 249
              S +E++A  K+ I + +   G   LN  D     +           +H  G+ T+  
Sbjct: 573 NYISTVEDLAVLKSVIVQNVAPRGMAVLNAADPMVARMAEGCPGSVTFFAHDPGLPTLAL 632

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                     +   +  + +   E ++    + +  +G      +N + ++     L  D
Sbjct: 633 HRAQGKRVVFVDGPEIVAAEGANETRIALADIPLTRNGTIGFQVENAMSSIAAAWALGID 692

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L+ F              +    TLI + Y  NP +++A  + ++ +      
Sbjct: 693 WTVIRRGLATFVNDAATAPGRFNLFDYKGATLIAD-YGHNPDAIQALCNAVATMPAQ--- 748

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALP 419
           RR+ V+      G+          ++L       V L           G  +  L++ L 
Sbjct: 749 RRMVVISG---AGDRRDEDIRKQTQILGGV-FDDVVLYEDQCQRGRADGEVLALLREGLQ 804

Query: 420 RSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            +      + + G           L  GD+ ++
Sbjct: 805 GASRTSRVDEIRGEFLAIDTALGRLQPGDLCLI 837


>gi|261749342|ref|YP_003257027.1| UDP-N-acetylmuramate--L-alanine ligase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497434|gb|ACX83884.1| UDP-N-acetylmuramate--L-alanine ligase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 459

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 128/373 (34%), Gaps = 43/373 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPLTLAR 155
           +  V A +      IAI G+ GKTTT  +L   L S+ KK  A +G  + +    L L  
Sbjct: 100 RSQVLALITENKICIAIGGTHGKTTTCILLGHILHSTGKKVTAFLGGISENYQSNLIL-- 157

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                +  + E        +      + P+IA IT +   H+  +   E +  A  +  +
Sbjct: 158 -NPGTEIFLVEADEFDHSFLH-----LSPNIACITCLDQDHVDTYPKKEALIQAYIDFSK 211

Query: 216 GLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            ++     +FL+         K K  +   K    +   K  ++          Q + + 
Sbjct: 212 KIKSPYKKLFLS---------KKKEESFPFKNAIYYSVEKEENYYSNHLLIKENQWFFDF 262

Query: 275 QLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               ++ +  +    G H  +N+   L I   L        ++L +F   +    R    
Sbjct: 263 HTPKETWKSLLLPIPGLHNLKNVTAALAISDYLKIKEKDVRRSLFLFKGIK----RRYSI 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG-DMCEMGELSQSFHIDL 392
             +    +  + Y  +P  + A IS +    P  +     +LG     +   ++ F  D 
Sbjct: 319 HYKSRKKIYIDDYAHHPTEINALISTIRTCFPDKK-----ILGIFQPHLFSRTKFFEEDF 373

Query: 393 AEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           A+ L           Y      + G    +L D +  +     ++ +  L   ++     
Sbjct: 374 AKSLEKLDLLILLDIYPAREFPIKGVSSNSLLDKIKMNSK---NKELAPLSKVLEKIEKK 430

Query: 444 G-DVVVVKSSNSC 455
             D+++   + + 
Sbjct: 431 NFDILLTIGAGNI 443


>gi|119944901|ref|YP_942581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
 gi|119863505|gb|ABM02982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
          Length = 445

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 125/372 (33%), Gaps = 52/372 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++ I+GS GK+T   +L     + K   A  G+          L  +  ++D  I E
Sbjct: 107 HAKLVTISGSNGKSTVTSLLGEMAVAAKIKVAVGGNIGIP-----ALDLLSPEIDLYILE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +   IA +  I+  H+  +    +  +AK  +++  +       N
Sbjct: 162 LSSFQL----ETTFSLNADIATLLNISEDHMDRYDSYAQYTAAKHRLYQQCK---MALYN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVV 284
            DD   +L   K+H+L      SFG  K A          +++     +  G  +     
Sbjct: 215 RDD---KLTYPKNHSLNK---TSFGFDKLA----YGLVTDADKQIFLAK-NGSPILAAKQ 263

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L    +   +       I   +      G   R            I++
Sbjct: 264 LKLSGKHNWMNTLAAFALGEAVGLSE---IGMFTALQAYSGLPHRCEFVAEINNVRWIND 320

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + +AA+  LS+  P   G    +LG   +  + S     +LA VL       +
Sbjct: 321 SKATNIGAAQAALLGLSETIP---GNVHVILGGDGKGADFS-----ELALVLKEIQ-GMI 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
              G     +     +       E ++     I ++   GD+V++    +S         
Sbjct: 372 VCFGVDGKKIA---AQHKRALLVENLEQAVENIFTTAQAGDLVILSPACASLDMYKNFMQ 428

Query: 453 NSCGFYRLINLL 464
               F RL+  L
Sbjct: 429 RGDHFKRLVKAL 440


>gi|87123641|ref|ZP_01079491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
 gi|86168210|gb|EAQ69467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
          Length = 466

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 129/373 (34%), Gaps = 46/373 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVP 150
           +  + ++A+A +  ++   I ITG+ GKTT  ++L   LSS        G+  +    + 
Sbjct: 94  VAVIGEMALAWQFLNRTPWIGITGTNGKTTVTQLLQHVLSSGGLHAPMAGNVGHSATELA 153

Query: 151 LTLARMPVDV------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           L+L+ +  +       D+ + E+    +        +V P I + TT+ P HL     +E
Sbjct: 154 LSLSAVAPNDGDPATPDWLVMEMSSYQI----EAAAIVAPRIGIWTTLTPDHLERHGTLE 209

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              + K  +   LE++     N DDS     +A               +   D       
Sbjct: 210 AYRAIKRGL---LERSQIRIFNADDSDLSRQRA-----SWDHGLWISAAGAGDGATAADL 261

Query: 265 QCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            C  +  +  + +G           G H  QNML+          + +    AL  F   
Sbjct: 262 WCDAEGVVHCRRRGPLFPASALAMPGDHNRQNMLLVTAAALEAGLEPEVIAAALRTFPGV 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +R           + ++S   N     AA+  L  +      R   VL        
Sbjct: 322 PHRLERL---GELKGMQVFNDSKATN---FDAAVVALRSVP-----RPAVVLAG------ 364

Query: 384 LSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPRS---IHVHYSETMDG---LFL 435
             Q+   +  E L+L       V L G     L + L  S     +   + +D    + L
Sbjct: 365 -GQTKQGEAGEWLTLMGERSCAVVLYGSGAEELANLLSSSGYPGQIRRCDDLDAAVPIAL 423

Query: 436 FIQSSLVDGDVVV 448
            +   L  G +++
Sbjct: 424 DLGRQLRAGTLLL 436


>gi|257870256|ref|ZP_05649909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
 gi|257804420|gb|EEV33242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
          Length = 458

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 124/353 (35%), Gaps = 39/353 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITG+ GKTTT  M+   L++       + S N        +A+     D
Sbjct: 106 AYKISEAPIIGITGTNGKTTTTTMIANVLNTGFSEGRALLSGNIGFPAS-NVAQTASAKD 164

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L  I  L     P IAVIT I  AHL       E   AK  + + +    
Sbjct: 165 RLIMELSSFQLMGIETL----HPKIAVITNIYEAHLDYHGNRSEYVRAKWRLQQNMTAED 220

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKS 280
            + +N++      L  ++ A     +  F   +  A   L + +         +  + ++
Sbjct: 221 FLVINWNQPELVELSQQTKA----KVIPFSTQQKVAGAYLFEEQ---------LYFKDEA 267

Query: 281 MEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +  V      G H  +N L  + +  +     +  ++AL  F        R +       
Sbjct: 268 IMPVSELGVPGSHNVENALAAIAVAKLEGIANEAIVQALHTFSGVP---HRTQYVDTIEG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + + A+          + + I + G   + G            + SL
Sbjct: 325 VRFFNDSKATNSLATEMAL------GGFQKDQLILLAGG-LDRGNSFDEL------IPSL 371

Query: 399 YNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  + L G     L +A  ++    +  +E +             GD V++
Sbjct: 372 QDLKAIVLFGQTKEKLAEAARKAGIKTIKLTEDVTTAVPLAYQLSQPGDTVLL 424


>gi|257456474|ref|ZP_05621670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
 gi|257446134|gb|EEV21181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
          Length = 481

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A ++A+TGS GK++T   L   L          G+       PLT           + EL
Sbjct: 115 APVLAVTGSKGKSSTVSALYYGLQQCGIPAFLGGNITVS---PLTFLTETRADTPVVLEL 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               LG++      ++P IA+IT I P H + +  +E   + K  I+   +K      NY
Sbjct: 172 SSWQLGDLAH-CPQLKPKIALITHIMPDHQNWYGSMERYVADKKIIYRNQDKNDYTICNY 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVH 285
           DD + ++   ++       ++ +         L  W      + + ++       +    
Sbjct: 231 DDGWGKIFAQETAG----QVFWYSAHPLPPHLLGAWIAPDGSARIRLKAGDDRLLLPPKI 286

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              G  + QN++     +++   +      A+  +     R + +
Sbjct: 287 AVPGAALKQNVMAASLALALYGVEPKKIPDAMKTYGGIPHRLEFF 331


>gi|283798343|ref|ZP_06347496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|291073926|gb|EFE11290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|295092803|emb|CBK78910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 448

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 128/380 (33%), Gaps = 45/380 (11%)

Query: 80  SLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           SL  P   V D  G  +      A   +K  + AITG+ GKTTT  +    + +   +  
Sbjct: 77  SLEAPFVSVIDQAGIPIWSEIQLAYHCAKGRLAAITGTNGKTTTTALTGEIMKACYDSVF 136

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +G+  +        A    +    + E+    L  I       RP+++ I  I P HL 
Sbjct: 137 VVGNIGDPYTAH---ALETTEKSVTVAEVSSFQLETI----MDFRPNVSAILNITPDHLD 189

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E     K  I +  ++     LNYDD            L  K +Y   + K    
Sbjct: 190 RHKTMERYIEIKEGITKNQKENDVCVLNYDDPVLREF---GETLKCKVVYFSSREK---- 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSME-----VVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              K     +   + V   G+++           +G H  +N++  + I   +   +DT 
Sbjct: 243 --LKKGLFLDGDQI-VYKDGETVTEIVNIHELKLLGRHNHENVMAAVAIAMNMDVPMDTI 299

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + +  F   E    R      +      ++S   NP    AA+  +  +     G  + 
Sbjct: 300 RRVVKRFEAVE---HRIEFVTERFGVKYYNDSKGTNPD---AAMQAIKAMP----GPTLL 349

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSIHVH--YSET 429
           + G            H +  E +  +   + ++ L G     + +   R       Y+E 
Sbjct: 350 IAGGY--------DKHSEYDEWIESFGGKVRYLVLIGQTRDKIAECAKRHGFTDIMYAED 401

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +        S    GD V++
Sbjct: 402 LKEAVQVCASYANAGDNVLL 421


>gi|326336748|ref|ZP_08202916.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325691218|gb|EGD33189.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 452

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/428 (14%), Positives = 140/428 (32%), Gaps = 55/428 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI     +   LVV    +      L   +F   +      +  V   +   +  +A+ 
Sbjct: 56  DFIPKDYTQENTLVVYTPAIPKEHKQL---LFFQKNNYKVCKRSEVLGMITEDSFCLAVA 112

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  +L   L      +A I ++   I        +       + E        
Sbjct: 113 GTHGKTTTSSILAHILVE---NHAPISAFLGGICENFQSNFICKGTKLTVVEADEFDRSF 169

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +R     + P IA IT +   HL  +   EE      +    ++  G + +         
Sbjct: 170 LR-----LSPTIACITAVDADHLDIYGNAEEFLRGFKDFTHRIKPNGKLII--------- 215

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVHHG 287
                         ++G +  +D+Q+   K  +     +++             +     
Sbjct: 216 -----RKGLPFEGLTYGINDGSDYQITHVKVQNGGYLFDIEFTNPETKEKQLVKDCTLFR 270

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +       +    +AL+ F   +   +R+   +N      ID+ Y 
Sbjct: 271 PGEHHLLNALAAVAVAHQAGYPLTHLAQALTSFKGVK---RRFSYIINTPEQVFIDD-YA 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398
            +P  + A  + +  + P+ +   I +L     +   ++ F    A+         +L +
Sbjct: 327 HHPTELNALYNGVRSMYPNQQ---ITILFQ-PHLFSRTRDFANGFAKSLSQFDRIILLDI 382

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           Y    + + G     L + +     +   ++   +  ++  +     ++VV  +   G  
Sbjct: 383 YPARELPIEGITSQWLLNKIENPNKILIQKS--AITDYLAKNPSP--ILVVAGAGDIGVE 438

Query: 459 RLINLLLE 466
             +  + +
Sbjct: 439 --VEKIRK 444


>gi|208778922|ref|ZP_03246268.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella novicida FTG]
 gi|208744722|gb|EDZ91020.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella novicida FTG]
          Length = 456

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 97/290 (33%), Gaps = 17/290 (5%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              G   I    V+ +        +   +     +IAI G+ GKTTT  M    L     
Sbjct: 73  MKRGMPIIEKILVEKLNYFSGPEWLYQNILKYKKVIAIAGTHGKTTTTTMTIKILEQAGL 132

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIA 193
                      +     ++    D ++ + E            + L+   P I VI  I 
Sbjct: 133 N---PSFLVGGVSSDFGVSSRYTDSEYFVIEADEYDTAFFDKRSKLIHYDPSIFVINNIE 189

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H   F  I+ I     ++   +  T  I  N  D   + + +      +  +      
Sbjct: 190 FDHADIFKDIDAIFWQFHQLLRKMSSTAKIIYNAKDDNVQKIISMGCWSELVKV------ 243

Query: 254 KNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            N+D  +   K   + S  E+  + G S+EV    IG H A N +    +   L    + 
Sbjct: 244 -NSDLGISITKHTLDYSKFELCDINGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEM 302

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              AL  F   +   +R     +Q   TL D+ +  +P S+K  +  +  
Sbjct: 303 VKGALESFRGVK---RRLEVLSHQDNITLYDD-FAHHPTSIKLTLEAVRN 348


>gi|46191054|ref|ZP_00120691.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Bifidobacterium longum DJO10A]
          Length = 474

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 59  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 116

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 117 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 172

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A++  A G + + 
Sbjct: 173 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAEAQTAEGCRKVG 230

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 231 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADAL 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 291 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 350

Query: 357 ISVL 360
           +S  
Sbjct: 351 LSSF 354


>gi|296454434|ref|YP_003661577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296183865|gb|ADH00747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 481

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 138/401 (34%), Gaps = 43/401 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A++  A G + + 
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAEAQTAEGCRKVG 237

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 238 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGEPVRLAAITDFTHLAEPDGSLYPHLVADAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 298 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +S           + +  +      G   +    D A  +         + G     + +
Sbjct: 358 LSSF-------PAKSVIWIAGGLAKGSRFEDLVKDQAHTIKAA-----VIIGKDQQPMVE 405

Query: 417 ALPR---SIHVHYSE------TMDGLFLFIQSSLVDGDVVV 448
           A       I V   +       MD       +    GD+V+
Sbjct: 406 AFASQAPDIPVTIIDPEDNDTVMDRAVEACGTYAAAGDIVL 446


>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
 gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
          Length = 441

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 126/367 (34%), Gaps = 34/367 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           + L +A R+     I+AITG+ GKTTT  ++T  L+   +    IG+    +     +  
Sbjct: 86  SDLELAQRIFEDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGML--WEIYN 143

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + E     L      T   +P  + I  I P H+     ++   +AK  + +
Sbjct: 144 SDKDT-YFVIECSSFQL----ESTKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLK 198

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++     LN DD ++E  K  + +       S    K +  +              + 
Sbjct: 199 NQDENCYTVLNVDDEYYEECKKFTKSNVYDVSTSTDVKKGSFIKDDSIYFSDSDCNKIID 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L+          IGYH  QN+L  + +  ++  + D+  + L  F   E    R      
Sbjct: 259 LKD------VKLIGYHNYQNVLFCVTLAKLIGINDDSIRQTLMSFSGVE---HRLEFVRE 309

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  +   AI            + + +L      G   +   +D   +
Sbjct: 310 LSGVKYYNDSKGTNVDASVKAIESFD--------KNVIILA-----GGYDKKVSLDNFFI 356

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
                   + L G     L +   R     ++   + M             GDVV++  +
Sbjct: 357 AGKDKFKALILMG-QTRDLFEKKAREYGFGNIFLVDDMKQAVTQANKIAESGDVVLLSPA 415

Query: 452 SNSCGFY 458
           S S G Y
Sbjct: 416 SASWGMY 422


>gi|225181552|ref|ZP_03734994.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167800|gb|EEG76609.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 898

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 128/396 (32%), Gaps = 43/396 (10%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-- 146
            DV  A+  +        +  + ++TG+ GKTTT  ML   +           +   +  
Sbjct: 461 RDVGKAIVDMLFPPGSPVRVPVFSVTGTNGKTTTARMLEFVMRRHGLYTGICCTDGIYFN 520

Query: 147 --------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL- 197
                   +  PL+   +    D  +  L  +  G IR      R  +AVIT I   HL 
Sbjct: 521 GQQVKKGDLTGPLSARTVLAHPDIEVAVLETARGGLIRRGLGYDRADVAVITNIRADHLG 580

Query: 198 -SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYS 249
                 ++++A  K+ + E +   G + LN D+     L A+  A            +  
Sbjct: 581 QDGIETLDDLAHVKSLVAEAVYPAGCVVLNADEPHVNELAARVWAEVIYVSMQSDNIVVR 640

Query: 250 --FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              GK   A F  R     +  S +    + +S  V H G   H  +N+L  L       
Sbjct: 641 HHLGKGGRAVFVRRGLVLAAHGSGVVPVGRVRSFVVTHGGRALHQVENLLGALAACWGFG 700

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                A   L  F  + G     RC L Q     +   Y  N   ++    +  ++    
Sbjct: 701 LSPRQAAAYLRTFAAQPGDN-PGRCNLYQVGDIRVLVDYGHNADGIEKTGLLAKKLGAE- 758

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--------------SGFHVLA 413
             R I V+G     G+ S    +   +  + +    + +              +G  +  
Sbjct: 759 --RLIGVVGVP---GDRSDELVMQAGQAAAGF-FDLLVIKEDHDLRGRRPREVAGLLMRG 812

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A      +              +    GD+VV+
Sbjct: 813 ALNAGRDRAALKVEPNERRAVKKALALSRPGDLVVI 848


>gi|323699053|ref|ZP_08110965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           ND132]
 gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 118/342 (34%), Gaps = 53/342 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A I+A+TGS GKTTT  +++  L    +     G+    + +   L  M    +  + E+
Sbjct: 117 APILAVTGSNGKTTTTTLISEILEKAGRRVFTGGNIG--VPLCEYLLDMEP-AEIIVLEV 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L          +PH+ +    +  HL   + ++E   AK  +F  +       L+ 
Sbjct: 174 SSFQLQN----CLRFKPHVGLFLNFSANHLDYHADLDEYLDAKLHLFSRMGPEDIALLH- 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +S   LL  +S                  F     +     +  E            H 
Sbjct: 229 -ESLHPLLDGRS------------------FTEAHIEWFGPTNRFEAP----------HL 259

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N+      V       + A +A+  F P      R      +     +++S  
Sbjct: 260 LGEHNRSNVEAAWQAVKRFGVSEEQAAEAIRDFRPLP---HRIEPVAERNGVLYVNDSKA 316

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               + +AA+    +        RI  +G + + G++++      AE +    ++ V L 
Sbjct: 317 TTLDAAEAAVHAFER------PVRIL-MGGVWKGGDVAK-----FAEGIKGR-VAAVGLF 363

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     L+  L R   V + ET+             GDVV++
Sbjct: 364 GGSREILEPELARHFSVTWDETLTEAVRRQAGLAAPGDVVLL 405


>gi|229541201|ref|ZP_04430261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
 gi|229325621|gb|EEN91296.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
          Length = 451

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 101/305 (33%), Gaps = 36/305 (11%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V  T+A+        + EL    L  ++      RPHIA+IT I  AHL      E  A 
Sbjct: 151 VASTVAQRARADQQMVVELSSFQLMGVQTF----RPHIAIITNIYEAHLDYHGTKEAYAK 206

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+ I     +   + LN+       L + + A     I  F   +     +       +
Sbjct: 207 AKSNITRNQTEDDFLILNHAQPELWDLVSFTKA----KIIPFSTKE----YVEDGASVKD 258

Query: 269 QSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            S M    +G+ +         G H  +N+L  +    ++ A  D     L  F   +  
Sbjct: 259 GSIM---WKGEKIMDRADIVLPGDHNLENILAAVAAAKLMGASNDAISGVLGTFKGVK-- 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +           ++S   N  + KAA++   Q         + +L    + G    
Sbjct: 314 -HRTQYIGEIKGRKFYNDSKATNILACKAALAAFHQ--------PVILLAGGLDRGNGFD 364

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDG 444
                   + +L  +  +   G     L+    ++    +   E ++       +    G
Sbjct: 365 EL------IPALKYVKALITFGETAPKLESTAKKAGIPVIRTVENVEEAVPVAWALSEPG 418

Query: 445 DVVVV 449
           D +++
Sbjct: 419 DCILL 423


>gi|189439042|ref|YP_001954123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227547554|ref|ZP_03977603.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|322689508|ref|YP_004209242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322691463|ref|YP_004221033.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|226711885|sp|B3DQM9|MURD_BIFLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189427477|gb|ACD97625.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227211964|gb|EEI79860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|320456319|dbj|BAJ66941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460844|dbj|BAJ71464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 481

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A++  A G + + 
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAEAQTAEGCRKVG 237

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 238 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 298 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 357

Query: 357 ISVL 360
           +S  
Sbjct: 358 LSSF 361


>gi|304312310|ref|YP_003811908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
 gi|301798043|emb|CBL46265.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
          Length = 468

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 119/373 (31%), Gaps = 33/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP--VDVDFGIFE 166
           ++ + G+ GKTTT  M+   L          IG   ++ G+   L       +  F + E
Sbjct: 105 VVGVAGTHGKTTTSSMVAWILEHAGLCPGFLIGGIPSNFGISARLGGKEGVAEPTFFVVE 164

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  +  +P  A++  +   H   F  +  I      +   +   G I 
Sbjct: 165 ADEYDSAFFDKRSKFIHYQPRTAILNNLEFDHADIFDDLAAIQRQFHHLVRTIPGQGRII 224

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           L   D   + +  K        +  FG   +A +Q    +     S   V L G+   EV
Sbjct: 225 LPASDENLKEVLKKG---CWTPVEEFGAGASAGWQAELLE--PGGSHFAVYLSGERQGEV 279

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L             I+AL  F   EG  +R           + D
Sbjct: 280 RWSMTGMHSVNNALAALAAARHCGVLPSDGIRALCEF---EGARRRMELVGEVQGVRVFD 336

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNI 401
           + +  +P ++   +  L      G+ R  AV+    E    +     H  L    S    
Sbjct: 337 D-FAHHPTAIATTLEGLRG--NVGDARIFAVI----EPRSNTMRMGVHQSLLAP-STAAA 388

Query: 402 SHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V      G +           +     ++++ +   I      GD VV+  SN  GF 
Sbjct: 389 DQVIWYQPPGLNWQLDGVIAASPVPARVEQSIEAIIADIVREARSGDQVVIM-SNG-GFG 446

Query: 459 ----RLINLLLEE 467
               +L+  L E 
Sbjct: 447 GIHAKLVAALRER 459


>gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 131

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +     + I G ++          +S DSR++ P + F A+KG  +D HDF+      
Sbjct: 3   MLSLDQAARLIPGATVHGDAGVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLGDVA-- 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                     +  +   L++P+    +   AL  LA   R R    ++A+TGS GKTT K
Sbjct: 61  --ARGAAAALVAHAPAGLAMPLIVGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIK 134
           EM+    ++  
Sbjct: 119 EMIASIFAAAG 129


>gi|295135636|ref|YP_003586312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
 gi|294983651|gb|ADF54116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
          Length = 445

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 117/344 (34%), Gaps = 34/344 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GKTTT ++    L          G+  +     +       +  + + EL  
Sbjct: 105 IVGITGSNGKTTTTKLTHHILKDGGLQVGMAGNVGDSFAKQV----AETNAGYYVLELSS 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L  I       RPHIAV+T I P HL  +    E    AK  I +   K      + D
Sbjct: 161 FQLDGIEKF----RPHIAVLTNITPDHLDRYEYKFENYIEAKFRITKNQTKDDYFIYDAD 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHH 286
           D         +        +S  +       L        +E + + +     +++    
Sbjct: 217 DEVITNWLKTNKIEAQLLPFSLERKLENGAYLENDTIIIKTENTELTMATSDLTLQ---- 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N +    +  +L    +T  +++  F   E    R    L       I++S 
Sbjct: 273 --GKHNTKNAMAAATVAKLLKIRKNTIRESMESFQGVE---HRLEKVLKINNVQYINDSK 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+  +       EG+ + +LG     G    + + +L  +++   +  +  
Sbjct: 328 ATNVNATYYALESM-------EGQTVWILG-----GVDKGNVYDELLPLVNE-KVKAIIC 374

Query: 407 SGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV 449
            G     + ++    +     +++M             GD V++
Sbjct: 375 LGVDNTKIMNSFGNCVETLIETQSMSEAVKMAYRLSEKGDTVLL 418


>gi|239621165|ref|ZP_04664196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515626|gb|EEQ55493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 474

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 59  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 116

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 117 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 172

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A++  A G + + 
Sbjct: 173 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAEAQTAEGCRKVG 230

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 231 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADAL 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 291 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 350

Query: 357 ISVL 360
           +S  
Sbjct: 351 LSSF 354


>gi|53803416|ref|YP_114845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
 gi|62900496|sp|Q604V5|MURD_METCA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53757177|gb|AAU91468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
          Length = 459

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 147/434 (33%), Gaps = 67/434 (15%)

Query: 31  SIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASI 78
            +DSR   P      EAF    +    + G DF   A+     LVV          +   
Sbjct: 50  VMDSRLAPPGLQDLREAFPDVPL----FLG-DFSRSALAAATHLVVSPGLSLDLAEIRES 104

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               + VFG  D+               +A ++AITG+ GK+T   ++ +   +     A
Sbjct: 105 HRCGVRVFGDLDLFACC----------VRAPVVAITGANGKSTVTTLVGLMAKAAGVNAA 154

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+    +     L  +    +  + EL    L      + L    +A +  I+P H+ 
Sbjct: 155 VGGNLGTPM-----LDLLDAAAELYVLELSSFQL----ERSELFEADVATVLNISPDHMD 205

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNAD 257
            +  +   A AK  +F G    G + LN DD     +    +  G + + +  G     D
Sbjct: 206 RYPDLASYAEAKRRVFRG---EGLMVLNQDDPLVAAM----YRPGRRAVRFGLGSGDELD 258

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + L +W+         +  +G  +         G H   N L  + I      D    + 
Sbjct: 259 YSLARWE-----GRAWLLAKGVPLLPADEVRIKGRHNLANALAAVAIADACGFDRQAMV- 312

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              V     G   R +   + G    +++S   N  +  AA+S L       EG+ + + 
Sbjct: 313 --GVLRTFPGLDHRMQWVADIGGVAYVNDSKATNVGACIAALSGL-------EGKVVLIA 363

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G   +  + S      L  V +   +    L G     + + L   +     +TM     
Sbjct: 364 GGDGKGADFS-----SLVPVAAE-KLRAAVLMGRDGPLIDEVLKGVVPTIRVKTMFEAVR 417

Query: 436 FIQSSLVDGDVVVV 449
             +     GD V++
Sbjct: 418 AARGVAQSGDTVLL 431


>gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
 gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
          Length = 430

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 122/342 (35%), Gaps = 46/342 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GKTT+ ++L+     +       G+             +     + + E+  
Sbjct: 100 VIAVTGSNGKTTSCKLLSFVFQKLGLDSYACGNIGTPAADV-----LGFKTKYLVLEISS 154

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L    F + ++   I V+  I P HL     +E  A +K ++   LE + T   N  D
Sbjct: 155 FQL----FWSKMLHIDIGVVLNIQPNHLDWHPSLEHYAKSKLKL---LEFSKTGIYNCSD 207

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  ++             KS    F   K ++  +     +  +GK     +  + 
Sbjct: 208 QNIMKFISE-------------KSNLCAFDPLKIRKVDDG----IVYEGKYYTFKNDFLK 250

Query: 290 YH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            H   QN+   L I S++  D+   ++ L  F P +    R            +++S   
Sbjct: 251 THQNLQNLSAILKIFSVMNFDLKQVLEILEDFKPLK---HRMEFVDEINGVVFLNDSKAT 307

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + A+  +A+   +          I +L      G      + DL   +      HV + G
Sbjct: 308 SSAATISALENFNS------RNVILLLA-----GRGKNEDYADLIAQI-KRKAKHVIVFG 355

Query: 409 FHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V  L+D L  S I    SE M    L        GDVV++
Sbjct: 356 EMVELLRDELKLSDIPYTISENMQNAVLKAFEISEKGDVVLL 397


>gi|85714971|ref|ZP_01045956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
 gi|85698168|gb|EAQ36040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
          Length = 466

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 117/381 (30%), Gaps = 49/381 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +AITG+ GK+TT  ++   +          G+    I         P     
Sbjct: 109 RHAPDAPFVAITGTNGKSTTTALVAHLMREAGHDVQMGGNIGTAILS----LEAPRRGRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     L   + P + ++  ++P HL     IE  A  K  +  G++  GT
Sbjct: 165 HVIEMSSYQID----LAPSLDPTVGILLNVSPDHLDRHGTIEHYAEVKERLIAGVQPQGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCSEQSWMEVQLQGK 279
             +  DD +   +  +    G   +    +   A   + +  +    S  +  E+   G 
Sbjct: 221 AVVGVDDRWCAAIADRQERAGRNVVRVSVRQPLAYGVNVEQERIVLASGGARSEIADIGG 280

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               +    G H AQN          L    +   + L  F    G   R      +   
Sbjct: 281 ----IGSLRGRHNAQNAACASAAALALGVSREILQQDLRSF---PGLAHRMEQVGRKAHV 333

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  +   A+S  + I     G+  +  G +  +                  
Sbjct: 334 LFVNDSKGTNADATGKALSSFADIFWIAGGKPKS--GGIASLDAFFPR------------ 379

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVVV---KSS 452
            I   +L G         L   +    S T+D          + + V   VV++    +S
Sbjct: 380 -IRKAYLIGEAAQEFAATLEGKVAYEISGTLDVAVPAAARDAEGAGVAEAVVLLSPACAS 438

Query: 453 ---------NSCGFYRLINLL 464
                        F  L+  L
Sbjct: 439 FDQFRNFEVRGDHFRELVQAL 459


>gi|171318508|ref|ZP_02907660.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
 gi|171096294|gb|EDT41200.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
          Length = 461

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 125/372 (33%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
                 E + A+        +  FG                 E     V  Q + +  V 
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDE--RFAVYSQSERVGAVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGDHNRMNALAAIATARHVGVPPAQAAESLASFRNVK---RRMEVRGSIDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRARIGRQNSRILAVL----EPRSNTMKLGVMKAQLPTSLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L DAL P        + +  L   +  +   GD V+V  SN  G
Sbjct: 388 VFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARAGDHVLVM-SNG-G 445

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 446 FGGVHQKLLDAL 457


>gi|125623755|ref|YP_001032238.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|158512796|sp|A2RJQ3|MURD_LACLM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|124492563|emb|CAL97506.1| MurD protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070524|gb|ADJ59924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 449

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 153/426 (35%), Gaps = 56/426 (13%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DF L     G      +  MV    +L IPV         L  L   A       II IT
Sbjct: 72  DFALMVKNPGIRY---DNPMVERAEALKIPVI----TEVELAYLVSEA------PIIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  ++   L++  ++    G+          +A+     D  + EL    L  
Sbjct: 119 GTNGKTTTTTLIADILNADGQSAKLSGNIGFP---ASEVAQKAQATDTLVMELSSFQLMG 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I       RP IA+IT +  AHL      E   +AK  I E +     + LN++      
Sbjct: 176 IDTF----RPKIALITNLFSAHLDYHGSQEAYEAAKWRIQENMTADDFLILNFNQEKCRK 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  K+ A    T+ +F   +    ++        + + + +   ++ E      G H  +
Sbjct: 232 LADKTKA----TVLAFSTKE----KVSGAYVNEGKIYFKDEFIMEASE--LSLPGDHNLE 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +    +  A+ +  ++ L+ F   +    R +         + ++S   N  + +
Sbjct: 282 NALAAIVASKLRGAENEAIVEVLTSFAGVK---HRLQYLGEIDGRKVYNDSKATNILATQ 338

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+S           +   + G   + G   +    DL       ++  + + G     L
Sbjct: 339 KALSGFD------NSKLWLLAGG-LDRGNGFEDLEKDL------EDLKGMVVFGQTADKL 385

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-------FYRLINLLLE 466
           +    + +I V  S+ +      I      GD +++  S +C        F    +L +E
Sbjct: 386 RLMAEKLNIPVFASQNVATALKEIMPQTQVGDTILL--SPACASWDQYKTFEERGDLFIE 443

Query: 467 EFPAIQ 472
            F +++
Sbjct: 444 AFESLK 449


>gi|167752297|ref|ZP_02424424.1| hypothetical protein ALIPUT_00541 [Alistipes putredinis DSM 17216]
 gi|167660538|gb|EDS04668.1| hypothetical protein ALIPUT_00541 [Alistipes putredinis DSM 17216]
          Length = 489

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 118/317 (37%), Gaps = 31/317 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLA 154
           +  +   L     ++A+ G+ GKTTT  ++   L+        A +G  + +    L L 
Sbjct: 127 RSQMLGYLSQGKFVMAVAGTHGKTTTTTLVA-WLNHRVTGGGSAFLGGISRNFSSNLVLG 185

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R          E        +R     + P +AV+T+    HL  +   E +  A ++  
Sbjct: 186 RG----RRLAVEADEFDRSFLR-----LWPDVAVVTSADADHLDIYGTHEALREAFSQFV 236

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-ME 273
             + + G + +         +  K    GI+ +Y +   +  DF  R         +  +
Sbjct: 237 GQIREGGALVV------KRGVDLKIGNPGIR-VYRYSYDEPCDFYARNVTLLEGGHYRYD 289

Query: 274 VQLQGKSME-VVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKR 329
           +   G  +E       G+   +N +  +      S    +   A +        EG  +R
Sbjct: 290 LVTPGGVVEGCTLGIPGWVNIENAVAAVAALWCASERDGEPLDAERLREALASFEGVKRR 349

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +   +N      +D+ Y  +P  + AAI+ + ++ P   GRR+  L     +   ++ F+
Sbjct: 350 FEFYVNTPRQVYMDD-YAHHPRELAAAITSVKKMFP---GRRLTALFQ-PHLYTRTRDFY 404

Query: 390 IDLAEVLSLYNISHVWL 406
            + AE LS  +   V L
Sbjct: 405 REFAEALS--HADRVVL 419


>gi|290890680|ref|ZP_06553750.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
 gi|290479655|gb|EFD88309.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
          Length = 438

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 130/384 (33%), Gaps = 54/384 (14%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            +++    +L+IPV    +V  AL         + K  ++A+TGS GKTTT  ++   L 
Sbjct: 72  KEIIKKALNLNIPVIT--EVQVAL--------DQFKGEVLAVTGSNGKTTTTTLIGKMLK 121

Query: 132 SIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        G+    IG+P++   +        + EL    L         ++P IAVIT
Sbjct: 122 ADNVDVKVGGN----IGIPVSELMLSDSQPRVLMLELSSFQLLG----AQNIKPKIAVIT 173

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  +H+      E    AK  I +   K   + LN      +    +S A         
Sbjct: 174 NLFSSHIDFHHTRENYLRAKFSITQHQTKDDYLVLNDSSIDSKDFAKRSQA--------- 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTA 308
               +  F        +  +   +    + +  +     +G H  +N+L  +    I   
Sbjct: 225 ---DDYYFSPTNTSVNTYVNDGTIYFDDEKIIDLSKVVLVGEHNLENILAAVTAAKIFGV 281

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                     V    +G   R          T+ ++S   +  + + A++   +      
Sbjct: 282 SNRAI---EKVLTSFKGLEHRLEAVGVIKERTIYNDSKATDIEATQKALASFKE------ 332

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRS--IHVH 425
              I ++    + G+       DL  ++ +  N+  +   G     L+ A  ++      
Sbjct: 333 --PINLIAGGLDRGD-------DLNRLVPNFKNVVSLITYGQTKNKLQSAGEKAGIKQTV 383

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
             +T+       +     G V++ 
Sbjct: 384 VVDTLKEAVAKAKELSRPGQVLLF 407


>gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
 gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
          Length = 516

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 62/429 (14%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +  +       +S DSR +     FF  KG       ++  A +KGA   V   +     
Sbjct: 21  VSNLTDFTATSVSYDSRKVKSGTLFFC-KGNFL--PKYLASAKEKGAIAYVAEKEYPEGE 77

Query: 79  GSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           G   +P   V+D   A++ L        ++   IIAITG+ GKTTT       L+     
Sbjct: 78  G---LPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHILAQSTDN 134

Query: 137 YACIGSYNNHI-------------GVPLTL-------ARMPVDVDFGIFELGMSHLGEIR 176
           +  + S  + I               P +L       A +   +   + E+        +
Sbjct: 135 HIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK--K 192

Query: 177 FLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFE 233
              + ++  + +   I+P H+         +    K ++   L  +    +N + + F +
Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQL---LVNSAKCLINAETEKFID 249

Query: 234 LLKAKSHALGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQGKSME-- 282
           +          + I+ F +         +   DF+ R   +   +S  E+    +  +  
Sbjct: 250 VYYTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQL 309

Query: 283 -----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G +   N +  +    +  A  + A+           RG+      N  
Sbjct: 310 NLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAV---ETLSHVHIRGRMEMINSNTH 366

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D  Y  N AS+K  ++ L         +   VLG     G+   S      + L+
Sbjct: 367 GTIYVD--YAHNYASLKRLLAFLK--RQTNADKVTVVLGA---TGDKGISRRPGFGKALT 419

Query: 398 LYNISHVWL 406
                 V L
Sbjct: 420 EEQPDEVIL 428


>gi|90962026|ref|YP_535942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius UCC118]
 gi|118595662|sp|Q1WT99|MURD_LACS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90821220|gb|ABD99859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           salivarius UCC118]
          Length = 458

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 32/307 (10%)

Query: 146 HIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IGVP + +A+     D  + EL    L  I        P +AV+T I  AH+      E
Sbjct: 147 NIGVPASQVAQEATSKDTIVTELSSFQLLGITE----YHPKVAVLTNIYEAHIDYHGTRE 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              +AK  I     +     +N+D+  ++ L  +S A  I      GKSK+  +    + 
Sbjct: 203 NYVNAKMRIVMNQTEDDYFVVNWDNEEWQELSQRSKA-KIVPFSRLGKSKDGAYVAGGYL 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E   M V              G H  +N L  + +  I     +   + L+ F    
Sbjct: 262 FYKEDKIMPVD--------NIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFS--- 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R +           ++S   N  + + A++  +          + +L    + G  
Sbjct: 311 GVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGFNN--------PVVLLAGGLDRGFT 362

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLV 442
            +     L        +  + + G     +  A   +      +T D             
Sbjct: 363 FEKLEPSL-----KNKVHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSN 417

Query: 443 DGDVVVV 449
           +GDV+++
Sbjct: 418 EGDVILL 424


>gi|254373958|ref|ZP_04989440.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           novicida GA99-3548]
 gi|151571678|gb|EDN37332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           novicida GA99-3548]
          Length = 456

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G ++EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNNVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVK---RRLEVLSHQDNITLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|146342500|ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. ORS278]
 gi|146195306|emb|CAL79331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bradyrhizobium sp.
           ORS278]
          Length = 466

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 135/430 (31%), Gaps = 55/430 (12%)

Query: 55  DFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +F    +  G  L   V    V       + V G  ++           R    A  IAI
Sbjct: 65  NFAALVLAPGVPLTHPVPHWSVLRAREAGVEVIGDIELF-----CRERRRHAPDAPFIAI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  ++   +          G+    I         P      + E+    + 
Sbjct: 120 TGTNGKSTTTALIAHLMRVAGYDTQMGGNIGTAILS----LEPPRMGRVHVIEMSSYQID 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               LT  + P I ++  ++  H+     IE  A+ K  +  G++  GT  +  DD F  
Sbjct: 176 ----LTPSLDPSIGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPQGTAIVGVDDGFCR 231

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +  +    G + +    K+  AD    +     + S  +  EV   G     +    G 
Sbjct: 232 AIADRLDQAGKRVVRISVKNPLADGLYTEHETIVRSSGGARSEVARLGG----IGSLRGQ 287

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H AQN          +    D   + L  F    G   R       G    +++S   N 
Sbjct: 288 HNAQNAACAAAAALAIGVREDVLQQGLRSF---PGLAHRMEQVGRLGNVLFVNDSKGTNA 344

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +   A+S  + I     G+  A  G +  +                   I   +L G  
Sbjct: 345 DATAHALSSFADIFWIAGGKPKA--GGITSLAGFFPR-------------IRKAYLIGEA 389

Query: 411 VLA----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
                  L + +P ++       ++      ++S +   VV++    +S           
Sbjct: 390 AKEFAGTLGEKVPHAMSGTLEVAVEQAAADAKASGLKEAVVLLSPACASFDQFRNFEIRG 449

Query: 455 CGFYRLINLL 464
             F  L+  L
Sbjct: 450 TRFRDLVQAL 459


>gi|306820978|ref|ZP_07454597.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550919|gb|EFM38891.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 111/334 (33%), Gaps = 42/334 (12%)

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+        K    +G+  N   V L       D    I EL    L  I  L    R
Sbjct: 121 SMVGDIYKLYDKNSFVVGNIGN---VALNSVLAADDNANFITELSSFQLESITDL----R 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            HI  I  I P HL      EE   AK  I E       + LN DD   ++   KS    
Sbjct: 174 VHIGAILNITPDHLERHKTFEEYKKAKYRIAENQSSDDFLILNKDDKEIDIKNVKSK--- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMT 299
              +  F   +  +         SE+  +   L  K+ E++     + +G H  +N L  
Sbjct: 231 ---VIYFSMKEKLE---DGVYYDSERQAIISSLFSKNQEIIKRGDINLLGDHNVENTLAA 284

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I       V+   + +  F   +    R +     G  + +++S   N  S   A+  
Sbjct: 285 IAIALSDNIPVEIIRQGIKNFVAVK---HRLQLVRKIGDVSYVNDSKGTNVDSTVKALKA 341

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKD- 416
           ++          I + G            H+D  EV+  ++  +  + L G     ++D 
Sbjct: 342 VNT-------DIILIAGGY--------DKHVDFDEVIKAFDGKVKSLLLFGETKYKIRDT 386

Query: 417 ALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AL      +H  + +            + D V++
Sbjct: 387 ALKYGFDKIHIFDNLKDCVQKAYELSENNDTVLL 420


>gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
 gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
          Length = 476

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 87/423 (20%), Positives = 153/423 (36%), Gaps = 47/423 (11%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             +DG D+    +   + +    T  +       IPV+   +V  A      +AR    A
Sbjct: 44  HSFDGIDWDSADIVMTSPVFNPRTPFILEAQRRGIPVYS--EVELAWRLRVDSARTGRPA 101

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             + ITG+ GKT+T EM +  L +       +G+    IG  ++ A +  D D    EL 
Sbjct: 102 PWVGITGTNGKTSTTEMTSAMLCANGLVAPAVGN----IGKAVSHAAVDPDNDALCVELS 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +    A IT IA  HL    GIE  A+ K+++F  + +   +  N D
Sbjct: 158 SFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRR--ALVFNAD 211

Query: 229 DSFFELLKAKSH-ALGIKTI-YSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSME 282
           D     L + +H A G + I ++ G  +     +       +          + +   ++
Sbjct: 212 DRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRSGVAGGAFGDETRLAPVQ 271

Query: 283 VVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--L 334
              H       +  H+  + +  L +   +  D+D A+ AL  F P   R +    A   
Sbjct: 272 EFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAFAPGGHRIQTVATAATG 331

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + G    ID+S   N  + +A++S  +        + +  +      G   +    D A 
Sbjct: 332 DGGSIRFIDDSKATNAHAARASLSSFA-------PKSVVWIAGGLAKGSRFEQLVADQAH 384

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRS--------IHVHYSET-MDGLFLFIQSSLVDGD 445
            +         + G     + +A   S        I    S+T M        +    GD
Sbjct: 385 TIKAA-----VIIGKDQKPMLEAFAASAPDIPLTVIEPEPSDTVMARAVDAAGAYAGTGD 439

Query: 446 VVV 448
           VV+
Sbjct: 440 VVL 442


>gi|23465882|ref|NP_696485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
 gi|30316056|sp|Q8G4Q6|MURD_BIFLO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23326585|gb|AAN25121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
          Length = 481

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 115/304 (37%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A++  A G + + 
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAEAQTAEGCRKVG 237

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  ++L
Sbjct: 238 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADVL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 298 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 357

Query: 357 ISVL 360
           +S  
Sbjct: 358 LSSF 361


>gi|251772197|gb|EES52767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 488

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 143/422 (33%), Gaps = 45/422 (10%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF-------------GVDDVLGALNK 97
           +DG  +     ++GA  V+    +   I S   PV               V   L  +  
Sbjct: 45  FDGPMWAP-VRERGAR-VLTGVRLGPWIRSWKGPVVMSPGIPPVAWCGQAVAPPLSNIRG 102

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
               A       ++AI G+ GK+TT  ++   L S   +    G++       + L R  
Sbjct: 103 ELEWAASLWDRPVVAIGGTNGKSTTTALVGHLLKSAGFSPFIGGNFGVPFSEGVRLMRTA 162

Query: 158 VDV------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D  + E+       ++  +    P I ++  I P HL  +  + +   AK 
Sbjct: 163 RKEGKRDPFDVAVIEVSSFQTESMQSFS----PDIYLLLNITPDHLDRYDSLAQYRLAKL 218

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +      + T+  N     +     ++ A  +    +              +    +  
Sbjct: 219 HVASLFSPSTTVIWNASQDDWREWGPRTKARSVFVGSAELPGPGVVLSGSHLQSHGLRDS 278

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQN----MLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             V   G      +  IG    QN    +L T+ +   +   +D  I   ++        
Sbjct: 279 FSVSTAG------YRLIGGGNLQNLAFSVLATILLGETMGRRIDPGILEEAIASFTGLPH 332

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  R A  +G  T +++S   N  +++AA++ LS +   G    + ++G   + G     
Sbjct: 333 RMERVATVRG-VTFVNDSKATNVGAVEAALAGLSDV---GHPHVVLIMGGRDKGGS---- 384

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +  L   L   ++  V   G     ++  L + I +  ++ +        S    G++V
Sbjct: 385 -YRPLIPWLKN-HVREVVAIGEAREKIRRDLGKEIPIEEAQDLFEAVARAFSVADSGEMV 442

Query: 448 VV 449
           ++
Sbjct: 443 LL 444


>gi|261855069|ref|YP_003262352.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
           neapolitanus c2]
 gi|261835538|gb|ACX95305.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
           neapolitanus c2]
          Length = 471

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 113/356 (31%), Gaps = 37/356 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S   ++ ITGS GK+T   ++   L++   +    G++         L  +  D D  + 
Sbjct: 102 SDVPVVLITGSNGKSTVTALVGELLNAAGVSAVVGGNFGTP-----ALDLLTTDADVLVL 156

Query: 166 ELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E+    L    F  L     P  A +  I+  HL     +   A+ K      L +    
Sbjct: 157 EVSSFQLESTDFSGLAPAQMPRAATVLNISQDHLDRHGTLAHYAAIKET---ALHQARRA 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKS 280
            LN DD     +  ++       +  FG +   + +DF L      S     +      S
Sbjct: 214 VLNRDDPMVAAMAERASG----DVIWFGTAMPTQPSDFGLMTIAGESWLIQAQANATALS 269

Query: 281 MEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQG 337
           +  V      G H   N+L  L ++  +  DV       L+V     G   R +      
Sbjct: 270 ILPVQALGLTGRHNQMNVLAALALIQAVVPDVALNDDRLLNVLRQFTGLPHRAQSVGVIN 329

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               ID+S   N  +  AAI              + + G   +  + +      LAE L 
Sbjct: 330 GVRFIDDSKATNVGAAVAAI-------LGMPAPLVLIAGGQGKGQDFAP-----LAESLV 377

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVV 449
                 + L G     + +AL       +      +M                V++
Sbjct: 378 GRCAG-LILMGQDQAVIAEALQNEPGATWPVRRVHSMIEAVQAAADIAPPQSTVLL 432


>gi|254368750|ref|ZP_04984763.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157121671|gb|EDO65841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 456

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N D  +   K   + S  E+  + G S+EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NFDLGISITKHTLDYSKFELCDINGNSVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|260773496|ref|ZP_05882412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612635|gb|EEX37838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 443

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 38/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +     A  G+          L  +    D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMAKAAGVKAAVGGNIGVP-----ALDLLAEAADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L+       A    ++  H+  +SG+ E   AK  IF       T  +N
Sbjct: 162 LSSFQLETTDHLSIAA----AAFLNLSEDHMDRYSGMAEYRQAKLRIFNH---AKTAVIN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD      +          I S G +  AD+ L    Q  E  ++ V+           
Sbjct: 215 ADD------RQTLPDDFSGPILSVGLNGAADYSLE-IHQGEE--YLSVKGTPVLAVSQLS 265

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  L ++  L  +   A++A        G   R +  +       +++S 
Sbjct: 266 LVGRHNIANALTALALLDALNIEYTHALEA---LKSYTGLTHRCQLVVEYDGIRWVNDSK 322

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L+      +G    ++G + +  + +      L  VL+   +  +  
Sbjct: 323 ATNLASTLAALSGLA-----VDGDLYLLVGGVGKGADFTP-----LKPVLATLPV-KLCC 371

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G      +  +P      Y  ++  +   I   L  GD+V++
Sbjct: 372 FGVDG---QQFMPLHPSARYYPSLSAILEEIHPQLKAGDMVLL 411


>gi|300721516|ref|YP_003710791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297628008|emb|CBJ88557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 456

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 132/381 (34%), Gaps = 48/381 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   +   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWVLEACGYKPGFLIGGVPGNFAVSAQIGESP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  I      +   +  TG I + 
Sbjct: 161 EYDSAFFDKRSKFVHYSPRTLIMNNLEFDHADIFENLASIQKQFHHLVRVVPSTGKIIVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            +D            + +K + S G             +Q +K  Q  + S  +V   G+
Sbjct: 221 DND------------INLKHVLSMGCWSEQEQLGDGGSWQAKKLSQ--DSSNYQVFHHGE 266

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + EV    +G H   N LM +     +      A +AL  F       +R         
Sbjct: 267 WVGEVNWSLVGEHNMHNGLMAIAAAHHIGIQPADACQALGEFINAR---RRLELRGEVNG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            ++ D+ +  +P ++ A +  L      G  R +AVL    E    +    +  +++   
Sbjct: 324 ISVYDD-FAHHPTAILATLEALRS-KVGGVARILAVL----EPRSNTMKMGMSKSDIAPS 377

Query: 399 YN-ISHVWLSGF--HVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                 V+L         + +   + +    +S  +D L   I  +   GD ++V  SN 
Sbjct: 378 MGRADEVFLYQPVNMPWQVVEIAEQCVQPARWSADIDTLVRMIVETAQPGDHILVM-SNG 436

Query: 455 CGF----YRLINLLLEEFPAI 471
            GF     +L+  L ++  A+
Sbjct: 437 -GFDGIHEKLLTELAKKADAV 456


>gi|213019467|ref|ZP_03335273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212994889|gb|EEB55531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 443

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 103/336 (30%), Gaps = 48/336 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +I ITG+ GK+TT  ++   L S  K  A  G+    I        +  D +  
Sbjct: 105 KTTNQKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLGMPI------LDLERDAEIY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     L     L + +   I+V+  I P H+     +    + K ++  G   +   
Sbjct: 159 VIEFSSFQL----ELMNEINVDISVLLNITPDHIDRHGSMNNYIATKLKLING---SKIA 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-- 281
            +  D+     +  K     I                      S Q     +L+  S+  
Sbjct: 212 VIGCDNKITSDVFNKFTGNKIP------------ISASMSPSLSSQCLGTGKLENHSLSV 259

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V  + +     +N++    +  +L  D  T +  +  F    G   R           
Sbjct: 260 SDVKINLVS--NVENIVAAHAVCKLLGVDSSTIVNEIKSF---PGLRHRNEFLGKIHNVL 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S + AI     I          V G   + G  S S H           
Sbjct: 315 FINDSKATNAESTEKAILSYKNIY-------WIVGGKSKKGGIESLSKH--------FTK 359

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           I   +L G       + +   I       ++  F  
Sbjct: 360 IRKAFLIGESTEVFANIMENKIDYMKCYNLENAFKL 395


>gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
 gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
          Length = 456

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 136/381 (35%), Gaps = 42/381 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
               SI    IPV          +++  A  L  +A IIAITG+ GKTTT  +    L  
Sbjct: 84  PFFKSISEKGIPVI---------SEIEFAYHLT-EANIIAITGTNGKTTTTALTGEILDK 133

Query: 133 IK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                    G+    +   +   +     D+ + E+    L  IR      +PHI+    
Sbjct: 134 ADIGEVRVGGNIGKPLIDVVQGLKKN---DWVVAEVSSFQLETIRDF----KPHISAFLN 186

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            +P HL     +E    AK  IFE         +NYDD  +++LKA           S  
Sbjct: 187 FSPDHLDRHLSVENYWKAKKRIFENQMSGDYALVNYDD--YKVLKAVEDCSARVFGVSLK 244

Query: 252 KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +      L + K     +   EV L  +S+       G H   N+     I  +  A  
Sbjct: 245 DNIEQGIYLEEDKLIINSADRSEVVLPVESI----PLKGKHNIYNIAFASLIAYLAGAST 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + +  F P+  R +     + +    +ID+S   NP    AAI+ L          
Sbjct: 301 EAIKEGVYQFIPEPHRLE--EVTVLKDRVMVIDDSKATNPH---AAINALKSFDQPI--- 352

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSE 428
            + + G     G+   +   + A  +    +  + L G     L + + R    +++   
Sbjct: 353 -VLIAG-----GQDRDADFSEFAREIVSR-VRALILLGETKDKLAETVLRMGFNNIYKVR 405

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            M+       +    GDV+++
Sbjct: 406 DMNEAVRKAIAHTEPGDVLLL 426


>gi|160903087|ref|YP_001568668.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
 gi|160360731|gb|ABX32345.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
          Length = 452

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 118/343 (34%), Gaps = 37/343 (10%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++    +  K       +   I   L            I E+  S  G I         
Sbjct: 118 MVSQIFKNAGKD---PTVFLGGIHDSLEDGNFRFGNGIVIAEVDESD-GFIEKT----ET 169

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + ++I  + P HL +++   E   +    F    K   + LN DD            L  
Sbjct: 170 NFSIINNLRPDHLEHYNNEFEKLESSLYKFAKNTKE-LVILNGDDVHLNKWH-----LNE 223

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           K +  FG+S+ AD+ ++   Q +     E+  +   + ++  +  G H A + L +  + 
Sbjct: 224 KKVLYFGQSEKADYIIKNRHQYNGYQVFEIYHKNTYIGDITLNLPGLHYAYDALASTALS 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +  T       FH     G+R+    ++   ++ID+ Y   P  +   +  +   
Sbjct: 284 LELGIEFSTIK---ETFHRYNSVGRRFNILYDKDNLSIIDD-YAHTPDEI---LETIKAT 336

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVL---------SLYNISHVWLSGFHVLA 413
             +   R+I  +        L   FHI D  +VL          +Y+     ++G     
Sbjct: 337 KEYFPKRKIITIFQPHRYTRLY--FHINDFIDVLKYSDEVLVYRIYSAFEEPINGVDEKK 394

Query: 414 LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + +AL  ++    Y  + D +   +        V++   +   
Sbjct: 395 VVEALNSQATFSKYYNSEDEIISDLLQE--KNAVLLFVGAGDI 435


>gi|257068265|ref|YP_003154520.1| UDP-N-acetylmuramate--alanine ligase [Brachybacterium faecium DSM
           4810]
 gi|256559083|gb|ACU84930.1| UDP-N-acetylmuramate--alanine ligase [Brachybacterium faecium DSM
           4810]
          Length = 510

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 171/484 (35%), Gaps = 54/484 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W     ++++    IG      V  ++++S                 DG  FI      G
Sbjct: 30  WPSESAVRSVHVVRIGGAGMSAVARLALESGLAVSGS-------DSQDG-QFIAPLRAAG 81

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---------------SKAT 109
           A + +      A++ +  + +  V   + A N    AAR R               +   
Sbjct: 82  ARIGI---GFDAALLADDVDLVIVSTAVRADNPEVRAARERGLPVIHRAAALAGLLADRE 138

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACI---------GSYNNHIGVPLTLARMPVDV 160
           +IA+ G+ GKTTT  M   AL   ++  A            +       P+         
Sbjct: 139 LIAVAGTHGKTTTTGMAVAALRGARRDPAWALGAAVPDLGRNAGLCADSPVPGETPGGGT 198

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E   S    + F      PH  V+T + P HL      E + +A   +   L   
Sbjct: 199 GLAVVEADESDGSFLAFA-----PHSLVVTNLEPDHLDFHGDAETLTAAFDALVGRLAPG 253

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ +  DD     L  ++   G+  +  +G  ++A + LR+ +  +  + +EV      
Sbjct: 254 GTLVVCADDPGARALGERAADQGV-DVVRYGAVEDAQWALREERSGARGAEIEVDTPHGP 312

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + V     G+H   N L  L   + +TA+ + A  A  V     G  +R+  A   G  T
Sbjct: 313 LTVQLAVTGHHNVLNALGALAATAAVTAETEVAALAAGVASFT-GASRRFDVAGLAGGVT 371

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE------ 394
           ++D+ Y  +P  + A ++    I          ++G    +   +++F +D A       
Sbjct: 372 VVDD-YAHHPREVAATVAAARGIVAAQPDPGRVLVGFQPHLFSRTRAFAVDFAAAVSAAD 430

Query: 395 ---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              VL +Y              + D    S  V      + L   ++++   GD++++  
Sbjct: 431 LAWVLPVYAAREDPDPTVDASTIADLAAES--VVPVGGAEELIERVRAAARPGDLLLMLG 488

Query: 452 SNSC 455
           +   
Sbjct: 489 AGDV 492


>gi|315125883|ref|YP_004067886.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas sp. SM9913]
 gi|315014397|gb|ADT67735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas sp. SM9913]
          Length = 451

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 144/410 (35%), Gaps = 35/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +   L  K+ ++A+ G+ GKTTT  ML  
Sbjct: 64  IVVIGNAMSRGNPCVEYVLDKGLPYTSGPEWLKHNLLQKSWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     L+       F + E            +  +   P  
Sbjct: 124 ILEYAGLK---PGFLIGGIVQNFGLSARVGQTPFFVIEADEYDTAFFDKRSKFIHYLPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  +  I      +   L ++G +    DD     + AK      +T
Sbjct: 181 LILNNLEFDHADIFEDLNAIKKQFHHLIRTLPQSGKVLWPKDDEALSDVIAKGLWSESET 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSI 305
           +       + D+QL K    ++ S   V L  +   VV    IG H  +N +M +     
Sbjct: 241 L-----GDDWDYQLLK----ADGSQFNVLLNTQLQGVVNWQAIGEHNVKNAMMAIAAARH 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++ +I AL  F   +   +R     +     + D+ +  +P +++  ++ L   + 
Sbjct: 292 VGIAIEHSIAALGEFISPK---RRMELKADINNIKVYDD-FAHHPTAIQTTLAGLR--AK 345

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFH--VLALKDALPRSI 422
            G  + IA+L    E    +    +     + SL +   V L        +LK+   ++ 
Sbjct: 346 VGNDKIIAIL----EPRSNTMKMGVHQFTLLDSLRDADEVLLFEPENLSWSLKEQAEKAG 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEF 468
            +   ++   +   +  S+     V++  SN  GF     + ++ L  ++
Sbjct: 402 -MQCFDSTIAIIETVLESIEPNQHVLIM-SNG-GFNGLHQQFVDGLANKY 448


>gi|223938694|ref|ZP_03630584.1| UDP-N-acetylmuramate [bacterium Ellin514]
 gi|223892682|gb|EEF59153.1| UDP-N-acetylmuramate [bacterium Ellin514]
          Length = 443

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 97/304 (31%), Gaps = 30/304 (9%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            D ++ I E            +  V   P +A+I  +   H   F  +  I +A      
Sbjct: 131 TDSEWFIIEGDEYDTAFFDKRSKFVHYLPEVAIINNLEFDHADIFENLGTIQTAFKRFIN 190

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + + G +  N DD     L   +H      +  FG  +   ++          S  E+ 
Sbjct: 191 LVPRNGQLIANGDDPNLAPLLNVTHC----PVKRFGFGEENAWRAMNLNLAPTVSEFEIP 246

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               S +     +G    +N L  +               A   F   +G  +R      
Sbjct: 247 ----SFKFRIGLLGELNVRNALAVVACAKHCGLKNHEIQSAFDTF---KGIKRRMEVRGV 299

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAE 394
            G  T++D+ +  +P +++     L  +    +G++I A+          +  F  +LA+
Sbjct: 300 SGGVTVVDD-FGHHPTAIR---ETLKALRIKFKGQKIWAIFEPRTNTTRRNV-FQTELAD 354

Query: 395 VLSLYN------ISHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             +  +      I+ + L            +++   +     Y    D +   +      
Sbjct: 355 SFADADAVVVSQIARLELLKPEERLDPERLMQEIKSKGKTAEYLLDADAIVEHVCKHAQG 414

Query: 444 GDVV 447
           G+V+
Sbjct: 415 GEVI 418


>gi|190570951|ref|YP_001975309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357223|emb|CAQ54641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 451

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 103/336 (30%), Gaps = 48/336 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +I ITG+ GK+TT  ++   L S  K  A  G+    I        +  D +  
Sbjct: 113 KTTNQKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLGMPI------LDLERDAEIY 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     L     L + +   I+V+  I P H+     +    + K ++  G   +   
Sbjct: 167 VIEFSSFQL----ELMNEINVDISVLLNITPDHIDRHGSMNNYIATKLKLING---SKIA 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-- 281
            +  D+     +  K     I                      S Q     +L+  S+  
Sbjct: 220 VIGCDNKITSDVFNKFTGNKIP------------ISASMSPSLSSQCLGTGKLENHSLSV 267

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V  + +     +N++    +  +L  D  T +  +  F    G   R           
Sbjct: 268 SDVKINLVS--NVENIVAAHAVCKLLGVDSSTIVNEIKSF---PGLRHRNEFLGKIHNVL 322

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S + AI     I          V G   + G  S S H           
Sbjct: 323 FINDSKATNAESTEKAILSYKNIY-------WIVGGKSKKGGIESLSKH--------FTK 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           I   +L G       + +   I       ++  F  
Sbjct: 368 IRKAFLIGESTEVFANIMENKIDYMKCYNLENAFKL 403


>gi|54307599|ref|YP_128619.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
 gi|46912022|emb|CAG18817.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 452

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 136/411 (33%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +   L     ++A+ G+ GKTTT  ML  
Sbjct: 64  LVVIGNAMSRGNPCVEHVLNTNMRYTSGPQWLQEFLLHDRWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     +     ++    +  F + E            +  V   P  
Sbjct: 124 ILEDCG---YQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+  +   H   F  ++ I      +   +   G I              ++  +G  +
Sbjct: 181 LVMNNLEFDHADIFDDLKAIQRQFHHLVRTVPSNGRILA----PKGVESIQQTLDMGCWS 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F    +  +  +  KQ ++ S  +V L G  +  V    +G H   N LM +     
Sbjct: 237 ELEF-TGDDGHWIAK--KQVADGSVFDVYLDGLMIGTVRWDLVGDHNVNNALMAIAAARH 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    D   +AL+ F   +   +R           + D+ +  +P +++  +  L     
Sbjct: 294 VGVTPDLGCEALATFINTK---RRLELKGEVKGVKVYDD-FAHHPTAIELTLGGLRA-KI 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVL-----ALKDALP 419
             E R +AVL    E    +    +   ++  +L     V++     +      + DA  
Sbjct: 349 GDEQRILAVL----EPRSNTMKLGVHKGDIAPALNAADCVFIFQPETIPWSVNEIADACS 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +         +D L   I + +  GD ++V  SN  GF  + + LL    A
Sbjct: 405 QPAVTD--TNLDKLVAEIVAEVKSGDTILVM-SNG-GFGGIHDKLLAALAA 451


>gi|268680557|ref|YP_003304988.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618588|gb|ACZ12953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 437

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 115/359 (32%), Gaps = 51/359 (14%)

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------------ARMPVDVD 161
            GKTTT   +   L  + +     G+    I                      +M VD  
Sbjct: 73  NGKTTTAAAIYSLLLDLGQKVGLQGTRGCFINEKRVEDKSLTTPPILQTIKNLKMAVDEG 132

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
              F + +S    ++     +   + ++T +   HL     I+E  + K+  FE      
Sbjct: 133 CEYFVMEVSSHAIVQNRIDGLFFALKILTNVTQDHLDFHKTIDEYIAVKSRFFE---DES 189

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N D+      +  +        +++G    A +++  +    E     +  + K  
Sbjct: 190 LKLINSDERHIRFNRINA--------FTYGIEHPATYKVLAYSL-KEGISAAIAKKEKVY 240

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      G+    N+L  +  V +L  A ++   +A+S F   EGR +      +Q    
Sbjct: 241 DFESSLHGFFNLYNLLAAISAVDLLHVAGMEEICEAVSHFGGVEGRMQVV----SQDPLV 296

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D  +   P  M+  +  +       +   I V G     G+  ++    +  V   Y 
Sbjct: 297 IVD--FAHTPDGMEKVLESMK------DKNCIVVFGA---GGDRDRTKRPKMGAVAERYA 345

Query: 401 ISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  S           +  +   + R+  +H                   DVV++  
Sbjct: 346 KWMIVTSDNPRSENPDAIIEEIVAGIQRTESLHVKVDRYQAIEEALGMQKKSDVVLILG 404


>gi|254430906|ref|ZP_05044609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
 gi|197625359|gb|EDY37918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
          Length = 473

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 116/361 (32%), Gaps = 41/361 (11%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           A         I ITG+ GKTT   ++   L +        G+        L L R     
Sbjct: 112 AWEASRPVPWIGITGTNGKTTVTHLVHHLLEASGLDAPMAGNVGYS-AAELVLDRRGSGA 170

Query: 161 D---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           +   + + EL    +         V P + + TT+ P HL     +E   + K  +   L
Sbjct: 171 ELPTWMVVELSSYQI----EAAPEVAPRVGIWTTLTPDHLERHGTLEAYRAIKRSL---L 223

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           E++    LN DD   +   A           + G  +    +  +     E   +     
Sbjct: 224 ERSQVQVLNGDDPDLQRHAASWPGACW---VTAGPRQELP-EAIRPHLWVEAGRVIRDHN 279

Query: 278 GKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           G S +          G H  QNM++ +               A   F     R +R    
Sbjct: 280 GTSQDLMAADCLAMPGEHNRQNMMLAIAAGLEAGLTGQQMECAFRSFPGVPHRLERI--- 336

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHI 390
             Q   +  ++S   N  + + A+  L+       G  + + G   + GE     ++ H 
Sbjct: 337 DQQAGVSYYNDSKATNYDAAEVAVRALA-------GPLVVLAGGQAKRGEARGWLEALHQ 389

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVV 447
             A  + L+  +          AL +    +  +H  + ++    L   + + L    V+
Sbjct: 390 K-ARAVVLFGAAQ-----AEFQALLEGASFAGAIHRCDGLNEAVPLARALAAELHCRAVL 443

Query: 448 V 448
           +
Sbjct: 444 L 444


>gi|188584697|ref|YP_001916242.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349384|gb|ACB83654.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 894

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 136/388 (35%), Gaps = 55/388 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTL 153
           L+++A +I++TG+ GKTTT   +   L S  K      S    I            P + 
Sbjct: 480 LQARAPVISVTGTNGKTTTVRAIDHILRSNGKDVGMTSSDGTFIKGELIDSGDNTGPNSA 539

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  D     F    +  G ++         +AV+T IA  HL       I+++   K+
Sbjct: 540 KALLKDPTIDSFVFETARGGLVKNGLGYSNAKVAVVTNIANDHLGQDGIESIDDLIFVKS 599

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E +EK G + LN  D +      K+       I  +    +  +            +
Sbjct: 600 LVVEAVEKQGVVVLNASDHYVSDFIRKAKG----RIIFYAMESDNHYVKSHLAAGGSALY 655

Query: 272 ME----VQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           ++    V   GK          + +   G+  H  +N +  +            A + L 
Sbjct: 656 LDQDNIVYATGKFHRKLGEITQLPLTMAGMARHNIENCMAGIAAAIGFGIAPSKAFEVLK 715

Query: 319 VF----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            F        GR   +RC   QG   L+D  Y  NP  M   ++++ ++        I V
Sbjct: 716 QFAPSYQDTPGRCNLFRC---QGKTVLLD--YGHNPEGMNRVLAMVEKMPVEKVISVIGV 770

Query: 375 LGD-----MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            GD     + E G++   +H  + +VL   +     L G       + L  ++   +SE 
Sbjct: 771 PGDRNDKLIKETGKVVGKYHELIEKVLVKEDSD---LRGRKSGETANLLQTTM-TEFSEE 826

Query: 430 MD--------GLFLFIQSSLVDGDVVVV 449
           +                S   + D+V++
Sbjct: 827 LAVEQNLQEIEAIKTALSEAGENDLVLI 854


>gi|94311991|ref|YP_585201.1| UDP-N-acetylmuramate [Cupriavidus metallidurans CH34]
 gi|93355843|gb|ABF09932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 477

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 132/373 (35%), Gaps = 32/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +A+ G+ GKTTT  ML   L          +G    + G+   L     + DF + E  
Sbjct: 123 TLAVAGTHGKTTTTSMLAWILEDAGYNPGFLVGGVPQNFGISARLT----ESDFFVIEAD 178

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G + +N
Sbjct: 179 EYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLTAIETQFHHLVRTVPGEGRLVVN 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +     +  +     ++  +  G     D +      + +   W    LQG    +V 
Sbjct: 239 GQEPALARVLERGCWSEVEQ-FGVGDWSETDPKTAAPEGKDAFDIWFREALQG---TLVW 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +  +     +      AI++L  F   +   +R       G  T+ D+ 
Sbjct: 295 DLQGTHNRLNAIAAIAAARHVGVPPAQAIESLGRFSNVK---RRMEVRGVAGGVTVYDD- 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHV 404
           +  +P +++  +  L      G+ R +AVL    E    +    +  A++  SL     V
Sbjct: 351 FAHHPTAIQTTVDGLR--RRVGDARILAVL----EPRSNTMKLGVMAAQLPASLREADLV 404

Query: 405 WLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL P        + +  L   ++++   GD V+V  SN  GF
Sbjct: 405 FGYGAPSGKDALGWNLAEALAPLGEKAAAFQDLGTLVEAVRAAAQPGDQVLVM-SNG-GF 462

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 463 GGVHQKLLDALGA 475


>gi|163741576|ref|ZP_02148967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385310|gb|EDQ09688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
          Length = 465

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 108/355 (30%), Gaps = 37/355 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R      I+A+TGS GK+TT  +L   L    +     G+    +         P   
Sbjct: 113 WERFDQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDP----PGSG 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL        R LT    P +AV T ++P HL   +G+    +AK  +F      
Sbjct: 169 GIVVLELSSYQTDLARALT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPD 224

Query: 221 GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +  D+     L  + S A     +     S+        W+  + + ++    +G+
Sbjct: 225 -RAIIGVDEDEGLYLAGQLSEAASDDRVIRISASRK--LTGPGWQVFARKGFLSEYRKGR 281

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +  +    G H  QN          L         AL+ +    G   R +   
Sbjct: 282 QAASIDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASY---PGLPHRSQTIA 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   N  S   A+S    I     G          E     ++      +
Sbjct: 339 THEGVRYVNDSKATNLDSAVKALSAFDNIRWICGG---------LEKDGGLEALRGQTGK 389

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 +   ++ G        A+   +      TM        +    GD V++
Sbjct: 390 ------VRKAYVIGREAAGF--AMQLDVEAEVCITMAEAVARASAEAEAGDTVLL 436


>gi|118497129|ref|YP_898179.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. novicida U112]
 gi|194323427|ref|ZP_03057204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. novicida FTE]
 gi|118423035|gb|ABK89425.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella novicida U112]
 gi|194322282|gb|EDX19763.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. novicida FTE]
          Length = 456

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 17/290 (5%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              G   I    V+ +        +   +     +IAI G+ GKTTT  M    L     
Sbjct: 73  MKRGMPIIEKILVEKLNYFSGPEWLYQNILKYKKVIAIAGTHGKTTTTTMTIKILEQAGL 132

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIA 193
                      +     ++    D ++ + E            + L+   P I VI  I 
Sbjct: 133 N---PSFLVGGVSSDFGVSSRYTDSEYFVIEADEYDTAFFDKRSKLIHYDPSIFVINNIE 189

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             H   F  I+ I     ++   +  T  I  N  D   + + +      +  +      
Sbjct: 190 FDHADIFKDIDAIFWQFHQLLRKMSSTAKIIYNAKDDNVQKIISMGCWSELVKV------ 243

Query: 254 KNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            N+D  +   K   + S  E+  + G ++EV    IG H A N +    +   L    + 
Sbjct: 244 -NSDLGISITKHTLDYSKFELCDINGNNVEVSWGLIGEHNALNAMSAYAVAKQLNISDEV 302

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              AL  F   +   +R     +Q   TL D+ +  +P S+K  +  +  
Sbjct: 303 VKDALESFRGVK---RRLEVLSHQDNITLYDD-FAHHPTSIKLTLEAVRN 348


>gi|312132482|ref|YP_003999821.1| murd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773410|gb|ADQ02898.1| MurD [Bifidobacterium longum subsp. longum BBMN68]
          Length = 481

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A++  A G + + 
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAEAQTAEGCRKVG 237

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 238 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFAHLAEPDGSLYPHLVADAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 298 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 357

Query: 357 ISVL 360
           +S  
Sbjct: 358 LSSF 361


>gi|317055687|ref|YP_004104154.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
 gi|315447956|gb|ADU21520.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
          Length = 464

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 113/350 (32%), Gaps = 44/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
              A+TGS GKTTT  +++  L S  K     G+    +   L L     + D  + EL 
Sbjct: 118 KTYALTGSDGKTTTTTLVSEFLKSEGKRVHLGGNIGKAL---LPLVETISETDVVVCELS 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P +A IT I P HL+    +EE   AK  I +         L+ D
Sbjct: 175 SFQLISMRE-----SPDVAGITNIRPNHLNVHGTMEEYTLAKCNILDHQNAYARSVLSLD 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--- 285
           D     L+ +        +  F   +  D          E   +    +GK  E VH   
Sbjct: 230 DEVTRGLQDRVRG----DLAWFSIKEKPD----NGAFLREDGMLCYNERGKVTEYVHMKD 281

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  ++ L  + +        +   K    F   E    R             + 
Sbjct: 282 IKIPGMHNVEDYLTAIAMTYG-EVKPENVAKIAKEFGGVE---HRIEFVRELDGVKYYNN 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  ++P  + A ++   Q     +G             +   SF    A +     +  +
Sbjct: 338 SIASSPTRVLACLAAFDQKQIMIQG-----------GSDKGVSFEPMAAPICEKVKV--L 384

Query: 405 WLSG---FHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     + A  +A P      + +   + M       +    +GD+V
Sbjct: 385 ILMGQTKDKIRAAVEAAPNFKGSGLKIITVKDMAEAVRTAREYAEEGDIV 434


>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 442

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 125/357 (35%), Gaps = 39/357 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  + + AR  ++A ++AITGS GK+T   ++     +     A  G++     +P    
Sbjct: 94  LGDIELFARE-ARAPVVAITGSNGKSTVTALVGEMARAAGLNVAVGGNFG----IPALDL 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               DV+  + EL    L      T  + P  A +  I+  HL  +  +E+ A+AK  IF
Sbjct: 149 LNDADVELYVLELSSFQL----ETTESLAPVAATVLNISADHLDRYESLEDYAAAKERIF 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWKQCSEQSWM 272
              E   T  +N DD     +       G     SFG       D+ L +       +  
Sbjct: 205 RRTE---TAVINRDDPRVWSMA------GGARRVSFGLDVPGEGDWGLVERDAEPWLAQG 255

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E+    +S        G H   N L  L +        +  ++AL+ F    G   R + 
Sbjct: 256 EIPWFAES---RLRIAGRHNTANALAALALGQAAGLPGEAMVEALTQFS---GLPHRCQW 309

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  +  ++S   N  +  AA+           G+ + + G   +  + +      +
Sbjct: 310 VTRLHGVSWYNDSKGTNLGATLAALEGF-------PGQVVLIAGGQGKGQDFAPLGDAVV 362

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +         V L G     +  AL   + V    +M+            GD V++
Sbjct: 363 GK------ARAVVLLGEDAPHIATALDGRVPVVSVASMEAAVAEAARLAQSGDSVLL 413


>gi|163738713|ref|ZP_02146127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388041|gb|EDQ12396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
          Length = 465

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 124/411 (30%), Gaps = 51/411 (12%)

Query: 59  HAVQKGA---GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARL 104
              + GA      +V +  +  +     PV          VD+ +G   +        R 
Sbjct: 57  DLQKAGAFDDIASLVVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERF 116

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                I+A+TGS GK+TT  +L   L    +     G+    +         P      +
Sbjct: 117 DQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDP----PGSGGIVV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL        R LT    P +AV T ++P HL   +G+    +AK  +F          
Sbjct: 173 LELSSYQTDLARALT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPD-RAI 227

Query: 225 LNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---- 279
           +  D+     L  + S A     +     S+        W+  + + ++    +G+    
Sbjct: 228 IGVDEDEGLYLAGQLSEAASDDRVIRISASQK--LTGLGWQVFARKGFLSEYRKGRQAAS 285

Query: 280 -SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +  +    G H  QN          L         AL+ +    G   R +       
Sbjct: 286 IDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASY---PGLPHRSQTIATHAG 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  S   A+S    I     G          E     ++      +    
Sbjct: 343 VRYVNDSKATNLDSAVKALSAFDNIRWICGG---------LEKDGGLEALRGQTGK---- 389

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   ++ G        A+   +      TM        +    GD V++
Sbjct: 390 --VRKAYVIGREAAGF--AMQLDVEAEVCITMAEAVARASAEAETGDTVLL 436


>gi|310287102|ref|YP_003938360.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium bifidum S17]
 gi|309251038|gb|ADO52786.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium bifidum S17]
          Length = 529

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 145/440 (32%), Gaps = 64/440 (14%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  VV ++ +      +   V   +  +  +++  + A L +    + + G+ GKTTT
Sbjct: 87  RGADTVVYSSAIKPDNPEI---VAAHERGIRIVHRSDILALLMNGRRAVTVAGAHGKTTT 143

Query: 123 KEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             +L+  L  +   K      +    I  P            G   +  +   +  F  +
Sbjct: 144 SSLLSHILVHAGTGKLADPSYAIGGTIQAPGRAVLDGGHAGRGDVLVAEADESDGSFCKY 203

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKS 239
             RP IAVIT     HL ++       +A  +       +G + +  DD     +L+   
Sbjct: 204 --RPSIAVITNALADHLDHYGDEAHYCAAFVD--HAGHASGHVVMTGDDEGAVAVLRDLD 259

Query: 240 HALGIKTIYSFGKSKN--ADFQ--------LRKWKQCSEQSWMEVQLQ------------ 277
            ++  +TI    K  +   D +               S +    V +             
Sbjct: 260 PSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFTVHVPASLASVCGCGDA 319

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             ++ V     G H A+N    +    +L    + A +A S F    G  +R++    + 
Sbjct: 320 DLALPVSLAVPGMHNARNATAAILAAMLLGVTPEAAAQAASTFL---GASRRFQVRGEEN 376

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T++D+ Y  +P  + A +    +  P    R   VL     +   +++F  + AE LS
Sbjct: 377 GVTVVDD-YAHHPTEISALLDAARRRYPRSVIR---VLFQ-PHLFSRTRTFAHEFAEALS 431

Query: 398 LYNISHVWLSG-------------FHVLALKDALPRSIH---------VHYSETMDGLFL 435
                 V ++G                + + DA     H         +   + M     
Sbjct: 432 K--ADDVIVTGIFPARELQRDFPDVSAMTIVDAAQDVPHASAQGDGTWISAVDDMQVAAQ 489

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
            +       DVV    +   
Sbjct: 490 MLAMRCRPTDVVFTVGAGDI 509


>gi|325679015|ref|ZP_08158613.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
 gi|324109519|gb|EGC03737.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
          Length = 465

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 111/350 (31%), Gaps = 44/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
              A+TGS GKTTT  +++  L +  K     G+    +   L L     + D  + EL 
Sbjct: 119 KTYALTGSDGKTTTTTLVSEFLKAEGKRVHLGGNIGKAL---LPLVETISETDVAVCELS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +R       P +A IT I P HL+    +EE   AK  I           L+ D
Sbjct: 176 SFQLISMRE-----SPDVAGITNIRPNHLNVHGTMEEYTQAKCNILYHQNAYSKAILSLD 230

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--- 285
           D     L           +  F   +  D          E   +     GK  E VH   
Sbjct: 231 DEVTHGLADLVRG----ELAWFSIKEKPD----NGAFLREDGMLCYNECGKVTEYVHMND 282

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  ++ L  + +        +T  K    F   E    R             + 
Sbjct: 283 IKIPGMHNVEDYLTAIAMTYG-EVKPETVAKIAKEFGGVE---HRIEFVRELDGVKYYNN 338

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S  ++P  + A ++   +     +G             +   SF    A +     +  +
Sbjct: 339 SIASSPTRVLACLAAFDKKQIMIQG-----------GSDKGVSFEPMAAPICEKVKV--L 385

Query: 405 WLSG---FHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L G     + A  +A P      I +   + M    L  +    +GD+V
Sbjct: 386 ILMGQTKDKIRAAVEAAPNFKTSGIKIITVKDMAEAVLTAREYAEEGDIV 435


>gi|103487367|ref|YP_616928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
 gi|118595694|sp|Q1GRX7|MURD_SPHAL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|98977444|gb|ABF53595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
          Length = 434

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 127/385 (32%), Gaps = 54/385 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    + A      +PV G  +       L   AR       ++ ITG+ GK+T   
Sbjct: 74  GVPLNRHPIAAHARDAHVPVIGDIE-------LFAEARSELPPHKVVGITGTNGKSTVTA 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L S        G+    I     L     +    + EL    +     L H +  
Sbjct: 127 LIAHMLESAGVPVLMGGNIGLPILTREPL----PEAGVYVLELSSFQID----LAHSLAC 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T I+P HL  + G E   ++KA +F    +     +  DD   +++ ++ +    
Sbjct: 179 DVAVLTNISPDHLDRYDGFEGYVASKARLFSLQHRDQVAIIATDDDPSKMIASRVNHRLH 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +               +      +  W  +Q             G H AQN +  +    
Sbjct: 239 R------------VSAKDIDPVDQARWPALQ-------------GPHNAQNAVCAIAACR 273

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  D +   + L+ F        R                YN + A+  A+ +      
Sbjct: 274 VLGLDDEAIERGLATFRSLP---HRMELVGEARGARW----YNDSKATNAASAAPALAAF 326

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           P    +R+  +      G+   +            ++   +L G  +      +  +I +
Sbjct: 327 PPAPDQRLHWIAGGQAKGDGLAACRPWFG------HVKRAYLIGEAMAPFAAEIGDAIAI 380

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
             S  +        +++  GD+V++
Sbjct: 381 ERSGDLASAVAQAAAAVQPGDIVLL 405


>gi|332187168|ref|ZP_08388908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
 gi|332012868|gb|EGI54933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
          Length = 429

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 128/393 (32%), Gaps = 59/393 (15%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSV 117
            A+    G+ +    + A+  +  +PV G  +       L   AR       ++ ITG+ 
Sbjct: 66  DALVVSPGVPLNTHPLAAAARAAGVPVIGDIE-------LFAQARKNLPPHKVVGITGTN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  ++   L +        G+    I     L     +    + EL    +     
Sbjct: 119 GKSTTTALVHHILKTAGVPTLMGGNIGLPILGQAPL----PEGGVYVLELSSYQID---- 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT  +   +AV+  I P HL  + G    A++KA +F          +   D     +  
Sbjct: 171 LTQSLDCDVAVLLNITPDHLDRYDGFAGYAASKARLFAMQTAGHVAVVGTGDEASANIAQ 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                        G +   D         +  + ++               G H AQN  
Sbjct: 231 -------------GLAGRTD----DLVTIAPDTVID-------QRRWPALHGPHNAQNAQ 266

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L  D       L+ +        R +    +     +++S   NP S   A+
Sbjct: 267 AAIAVTRALGIDEAAIEAGLASYASLP---HRMQHVATRNGVAFVNDSKATNPESTAPAL 323

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +   ++     G+R    GD       + + H+D        ++   +  G       D 
Sbjct: 324 AAFPRVHWIVGGKRK---GDDL----DACAAHLD--------HVVAAYTIGEAAPLFFDL 368

Query: 418 LPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
           L   +  V  S T++   +   ++   GD V++
Sbjct: 369 LKDKVPVVEQSGTLEAAVVHAAAAARPGDTVLL 401


>gi|302342207|ref|YP_003806736.1| Mur ligase middle domain protein [Desulfarculus baarsii DSM 2075]
 gi|301638820|gb|ADK84142.1| Mur ligase middle domain protein [Desulfarculus baarsii DSM 2075]
          Length = 483

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 134/385 (34%), Gaps = 43/385 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL +L +A       T I I G+ GKTTT  +    L       A  G     + +   
Sbjct: 107 QALAELFIA-----DKTAIVIAGTHGKTTTTALTASGLLHAG---AAPGFLVGGVMIEGG 158

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAK 210
                      + E               V  RP I V+T++   H   ++ ++ +  A 
Sbjct: 159 RNFADGRGAHFVVEGDEYDTAFFDKRPKFVHYRPKIGVLTSVEFDHADIYADLDAVRVAF 218

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +    +   G +    DD        K+       + ++G+     ++L   +   +  
Sbjct: 219 DQFAALIPPEGVLIAWGDDPEVLARAQKARC----PVQTYGQGPQCLWRLLAARPSPQGG 274

Query: 271 W-MEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +E+Q  G  ++E      G H A N    +  ++     +  A +   +F    G  +
Sbjct: 275 ALIELQPPGGPAVEFYSPLAGRHNALNACAAVAAMTAGGVALAEACRVQGLFQ---GVRR 331

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGEL 384
           R       G  T++D+ +  +P +++  I+ ++         G+GR IAV          
Sbjct: 332 RQEVRDRAGGVTVVDD-FAHHPTAVRETIAAVADFGLPGWRPGDGRLIAVFEP---RTNT 387

Query: 385 SQSFHIDLAEVLSLYN-ISHVWL---SGFHVLA----------LKDALPRSIHVHYSETM 430
           S++ H   AE  + ++    V L    G   +            +D   R +        
Sbjct: 388 SKTNHFQ-AEYATAFDRADLVLLREPPGAEAIEASRRFSSTRLAQDLAERGLQARALANG 446

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
           DGL   + + L  GD+ ++  SN  
Sbjct: 447 DGLLAELLAELRPGDLCLIM-SNGA 470


>gi|325109140|ref|YP_004270208.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969408|gb|ADY60186.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces brasiliensis
           DSM 5305]
          Length = 495

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 121/368 (32%), Gaps = 41/368 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +      RL  +   +A+ G+ GKTTT  +L+  LS+    +  +            ++ 
Sbjct: 112 SYAQALGRLSEQIPTVAVAGTHGKTTTSSLLSHILSTAGCAHQLVNGGRFLHTQEKAISS 171

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + E       E R     + P IA++ ++   H   +     + +A A+   
Sbjct: 172 EKPD--WLVAE-----SCEFRRSFLEISPKIAILLSVEADHFDCYPDEATLVAAFADFCS 224

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH----ALGIKTIYSFGKSKNAD-----FQLRKWKQC 266
            +   G + +N            +         + + +   +   D     + +    Q 
Sbjct: 225 RMPSEGKLLVNAACPRALRAAQAADCSIICFDTRDVSARASTNAIDEATHTWTVGNPIQT 284

Query: 267 SEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 E+Q    +         G H   N +  +        ++  A+ A+  F   E 
Sbjct: 285 HNGVEFELQYGDQQPHACRLPLSGEHQISNAIAAIAAAVECGVELKQAVLAVESFPGVE- 343

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +R++       + L+D+ Y  +P  ++A IS   +  P      + V     ++ + +
Sbjct: 344 --RRFQLRGRYADWLLLDD-YAHHPTEIRATISAARERFPDY---LLTVAFQPHQI-QRT 396

Query: 386 QSFHIDLAEVLSLYNISHVW--------------LSGFHVLALKDALPRSIHVHYSETMD 431
           +    + A+ L L     V+              +       ++  L R     +  T+D
Sbjct: 397 ERLMSEFADALRL--ADRVFVLPVFAARETADQRVISTSQQLVQQGLERGAEFQFCPTLD 454

Query: 432 GLFLFIQS 439
            L L +  
Sbjct: 455 QLRLILDD 462


>gi|42518896|ref|NP_964826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii NCC 533]
 gi|62900556|sp|Q74JY5|MURD_LACJO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|41583182|gb|AAS08792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii NCC 533]
          Length = 460

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 127/390 (32%), Gaps = 50/390 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L IPV    +   ALN              + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVEKAEKLDIPVIT--EPEIALNVSEAPY--------VCVTGSNGKTTTVMLTQ 132

Query: 128 IA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 LS        +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 RIMDHNLSKNGGHAYAVGNIGVPISEVVEKATSK---DLLVVEMSSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +A I  I    HL      +    AK  I +  ++      N+D    + +  K    
Sbjct: 186 PKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANFDQ---KNILEKELDK 242

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + +F +  K AD+ +      S+     +++            G H  QN L+ + 
Sbjct: 243 TKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISD------IKIPGIHNQQNCLVAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I  ++ AD      ALS F    G   R +  +      + ++S + N  +   AI    
Sbjct: 297 ISKLMGADDSDIQYALSTFT---GATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFK 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +         IA        G L + F  D    L   ++  + L G     L DA  ++
Sbjct: 354 EPEV-----LIA--------GGLDRGFMFDSLVPLFKKHVKSIVLYGETKYLLADAARKA 400

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    T+             GDV++ 
Sbjct: 401 GIKDIVIVNTLQEAVPRAYELSEAGDVILF 430


>gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 481

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 142/387 (36%), Gaps = 44/387 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  + +V  A      + R  S A  I ITG+ GKT+T EM +  L +   T   +G+  
Sbjct: 83  IEVISEVELAWRMRVPSERTGSPAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAVGN-- 140

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             IG  L+ A +    D    EL    L      T+ +    A IT IA  HL    G+ 
Sbjct: 141 --IGNALSAAALDPVNDVLCVELSSFQL----HFTYSLELDCAAITNIAADHLDWHGGMA 194

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI-YSFGKSKNADFQLRK 262
             A+ K+++F+G ++   I  N  D+    L   +  A G + I ++ G+  +    ++ 
Sbjct: 195 NYATDKSKVFDGAKR--VIAYNAQDARVSELARTAQTAEGCEHIGFTLGEPVSGQIGIKD 252

Query: 263 WKQCS-----EQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLGIVSILTADVDT 312
                          E        +  H       I  H+  + L  L +V  L ADV T
Sbjct: 253 GWIVDMSGLCGGQTGEAYALAPIADFTHLAEPDGTIYPHLLADALTALILVVGLGADVAT 312

Query: 313 AIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           A+ AL  F P   R +     A  +G    +D+S   N  + +A+++  +       G  
Sbjct: 313 ALNALKRFAPGGHRIQTVAELASPEGTIRFVDDSKATNAHAARASLNSFA------PGSV 366

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--------- 422
           + + G + +     +    +         +  V + G     + +AL             
Sbjct: 367 VWIAGGLSKGATFEELVEQE------RNRLKAVVVIGIDQKPMLEALKAKAPELPLTVID 420

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  M+            GDVV++
Sbjct: 421 PADNATVMERAIDAAADFAEPGDVVLL 447


>gi|333027605|ref|ZP_08455669.1| hypothetical protein STTU_5109 [Streptomyces sp. Tu6071]
 gi|332747457|gb|EGJ77898.1| hypothetical protein STTU_5109 [Streptomyces sp. Tu6071]
          Length = 514

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 110/319 (34%), Gaps = 37/319 (11%)

Query: 154 ARMPVDVDFGIFELG----MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIAS 208
            R     D G F LG    ++   E       + P  AV+  +   H   F  GI  I  
Sbjct: 180 TRAGDFTDGGNFRLGEGPFVTEACEYHEAFRFLEPDAAVVLNVYHDHGDFFTEGIRTIEE 239

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A A         G + +  D     LL+  +    +    S G + +AD+++      + 
Sbjct: 240 AFARFVARTRPGGLVVVGADCPRARLLEVPAAVRRV----SVGFAADADYRIGDVVWKAG 295

Query: 269 QSWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           ++   +   G+    +     G H   N+     + S L   ++ A+ AL+ F    G  
Sbjct: 296 RASFSIGGPGRRRVRLDPALPGRHNILNVAAAFALASELDLPLEKAVPALNGFT---GAP 352

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL---------GDM 378
           +R     N     + D+   +   +  A +  +  ++    GR   VL          + 
Sbjct: 353 RRLEYQGNADGIAVWDDLACSTGEAT-ATMEAVRGLA--QGGRITVVLRPNSFSRVRDNF 409

Query: 379 CEM-GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETM------ 430
            E  G  + + H+ + ++    +       G H   L  +   +   V Y   +      
Sbjct: 410 AEYAGVFTTTEHVIVTDIFPGRDTE---TFGQHARDLVANMAAKGRDVVYVPDLNGRPDR 466

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           + +F  + + L  GD ++V
Sbjct: 467 ERIFDLLNARLESGD-ILV 484


>gi|310828116|ref|YP_003960473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
 gi|308739850|gb|ADO37510.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
          Length = 458

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 129/379 (34%), Gaps = 48/379 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 +PV G  ++          A   +KA  +AITG+ GKTTT  +      +  + 
Sbjct: 92  EAYRCGVPVIGEAEL----------AYCMTKAPFVAITGTNGKTTTTTLTGEIFKNSGRK 141

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+  + I   +  A      D  + E+    L  I    +  RP  + I  ++P H
Sbjct: 142 TYTVGNIGDPISNYVMEA---APEDVFVAEISAFQLETI----NKFRPVASAILNLSPDH 194

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-- 254
           +  +  +E   +AKA IFE       + LN DD     L  ++        Y F   K  
Sbjct: 195 MDRYGTMENYIAAKARIFENQRGEDFLVLNADDEQVCELGRQAQCRK----YYFSLDKKV 250

Query: 255 --NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              A            +S + +    +  E+   G   H  QN L    +   +  DV +
Sbjct: 251 AQGAYAMDGGIFINDNESVIPIC---RIEEMGIKGP--HNVQNALAATVLAYFMGVDVVS 305

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F   E    R       G    I++S   N  +   A++ +++         I
Sbjct: 306 IAETLKSFGGVE---HRQEFVATIGGVDYINDSKGTNTNAAIVALNAMTK-------PVI 355

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETM 430
            + G     G   +  + +  EV+    +  + L G     ++ A     +         
Sbjct: 356 LIAG-----GYDKKEDYSEFIEVVCK-KVKRMVLVGATAPQIEAAAESQGYYSTVRVGDY 409

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           D            GDVV++
Sbjct: 410 DEAVKVASECAAPGDVVLL 428


>gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 522

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/487 (15%), Positives = 157/487 (32%), Gaps = 63/487 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           +P+ +++ +  D+R I P      +KG  +   D++L A ++G    V   +        
Sbjct: 49  LPELWLSSVVYDTRMITPGALLV-VKG-RFK-EDYLLPAQEQGMVAYVAEREYS---SLT 102

Query: 82  SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI------ 133
           + P   V D L A++ LA         + TI+ ITG+ GKTTT  ++   LS +      
Sbjct: 103 TCPGLIVTDALEAMSLLAAELYGHPERELTIVGITGTKGKTTTAHLVHAVLSQVTGGRSA 162

Query: 134 ----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                      +T+             L + R  +D       + +S           + 
Sbjct: 163 MFSSNHLCLDGRTFTPAVLTTPESADSLRMMRQALDAGMTHLVMEVSSQAYKLKRVFGLT 222

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + V   I   H+S       E+    K E+      +  + LN D  +  LL  ++  
Sbjct: 223 FDVGVFLNIGQDHISLVEHPTFEDYFFCKRELIRH---SRQLVLNADTDYHGLLTEEARL 279

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------EVVHHGIGYHMAQN 295
            G +T  +  +               E     ++  G+ +       +     G     N
Sbjct: 280 AGART-LTVSREDG------DLILTQEGKGFTLRYHGQEVAGSADQPMRLRLAGAFNQDN 332

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               + +   L +   +    L      +  G+  R     G    +D ++N    S  +
Sbjct: 333 AAAAVAVALSLGSPAGS--PQLRALEQVQVSGRMERLVSADGVVGYVDFAHNH--LSTSS 388

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +  + ++      R I V G     G  + +    +    +    S ++          
Sbjct: 389 LLDEVERVYGRENPRIILVSGS---TGGKAVNRRQGIVTAANGRVDSFIFTEDDQDRENA 445

Query: 416 DALPRSIHVHYSET-------------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             + R +  + ++T             ++      +      +V++V        Y ++N
Sbjct: 446 TQIARQMRGYVTDTEASTQIVMPRAKAIEAAVGQAREYPGRRNVILVIG-KGDEVYNVVN 504

Query: 463 LLLEEFP 469
            + + + 
Sbjct: 505 GVKQPYE 511


>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
 gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
          Length = 456

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 144/413 (34%), Gaps = 67/413 (16%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V       IPV          +++ +A R+  KA I+A+TG+ GKTTT  +L   +    
Sbjct: 89  VMEAFKRRIPVI---------SEIELAYRVT-KAPILAVTGTNGKTTTTTLLGSMIGHSS 138

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             +A  G+    +      A +  +      E+    L  I+       P  AVI  I P
Sbjct: 139 IPFAVAGNLGISLSRE---AELVAEDGVIAAEVSSFQLEFIKDFC----PKAAVILNITP 191

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H+     +E   +AKA IFE + K   + LN +D +  +L  K+      T+  F  S+
Sbjct: 192 DHIERHHTMERYVAAKARIFENMGKDNCLLLNAEDEYTPILMKKAKNT---TVCLFSISR 248

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADV 310
           +      +   C   + + ++ +GK ++          G    QN+L    +       +
Sbjct: 249 D-----VEEGACLNGADLVIKRRGKVLKVAGIDELQLTGNQNYQNVLAAAFLAYEGGIPL 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     +  F   +G   R          +  ++S   N  +    +   ++        
Sbjct: 304 EAIHDGIIEF---KGLPHRIEFVRELDGVSYYNDSKATNTDAAIKGMETFNR-------P 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLSGFHVLALKDALPRS--IHVHY 426
            I + G            H  L + +      +  + L G      KD   ++    +  
Sbjct: 354 IILIAGGY--------DKHTKLDKFMKTVKARVKCLILLGNAAARFKDEAEKAGIKTIVL 405

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSS--------------NSCGFYRLINLLL 465
           ++ M G     +S    GDVV++  S                  F +++N L 
Sbjct: 406 ADDMRGAVEKGKSIACSGDVVLL--SPACSSFDMYANYEARGFDFKKIVNRLK 456


>gi|240850894|ref|YP_002972294.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Bartonella grahamii
           as4aup]
 gi|240268017|gb|ACS51605.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Bartonella grahamii
           as4aup]
          Length = 464

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 104/317 (32%), Gaps = 28/317 (8%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +F+   V  G  L       V       +I + G  +  V    + L            I
Sbjct: 65  EFVALIVAPGVPLNYPQPHWVVEKARKKNIEIIGDIELFVRARQHFLQHYGFCDQDVPFI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L   L  +       G+    I       +  V     + E     
Sbjct: 125 AITGTNGKSTTTVLLAHLLEKMGYDVQVGGNIGKAIL----TLKPFVKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     LT  ++P I ++  + P H+            K  +     +    F++ DD+ 
Sbjct: 181 ID----LTPSLQPTIGLLLNLTPDHIDRHGSFACYVQTKRHLIAQASQ---AFISVDDAA 233

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHH 286
              L  +    G K I +  K    D  +      ++ + +    QG+      +  +  
Sbjct: 234 CRFLYQQLLHEG-KKIGAISK----DHFVEN-GFYADGTKLFAVYQGQRHMLADLTSMTA 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H AQN LM L  +  L     +           +G   R +     G    I++S 
Sbjct: 288 LRGRHNAQNALMALATLQALKITDPSM---NKHLASYKGLDHRMQQVRKMGAVLFINDSK 344

Query: 347 NANPASMKAAISVLSQI 363
             N  +   A+S  + I
Sbjct: 345 ATNADATAPALSTFNDI 361


>gi|227889755|ref|ZP_04007560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849619|gb|EEJ59705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 460

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 128/390 (32%), Gaps = 50/390 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L+IPV    +   ALN              + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVEKAEKLNIPVIT--EPEIALNVSEAPY--------VCVTGSNGKTTTVMLTQ 132

Query: 128 IA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 LS        +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 RIMDHHLSKNGGHAYAVGNIGVPISEVVEKATSK---DLLVVEMSSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +A I  I    HL      +    AK  I +  ++      N+D    + +  K    
Sbjct: 186 PKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANFDQ---KNILEKELDK 242

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + +F +  K AD+ +      S+     +++            G H  QN L+ + 
Sbjct: 243 TKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISD------IKIPGIHNQQNCLVAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I  ++ AD      ALS F    G   R +  +      + ++S + N  +   AI    
Sbjct: 297 ISKLMGADDSDIQYALSTFT---GATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFK 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +         IA        G L + F  D    L   ++  + L G     L DA  ++
Sbjct: 354 EPEV-----LIA--------GGLDRGFMFDSLVPLFKKHVKSIVLYGETKYLLADAARKA 400

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    T+             GDV++ 
Sbjct: 401 GIKDIVIVNTLQEAVPRAYELSEAGDVILF 430


>gi|302143800|emb|CBI22661.3| unnamed protein product [Vitis vinifera]
          Length = 626

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 107/333 (32%), Gaps = 45/333 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            +L     +IA++G+ GK+TT  ML   L S+      +            +  M     
Sbjct: 151 GKLTEHYNLIAVSGTHGKSTTASMLAYVLKSMGDDLTAVVGAQVPQFGGGNI--MSGSGR 208

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E        +  L     P+IAV+T +   H+  F   E + +      + +   G
Sbjct: 209 NFVLEADEYDCCFLGLL-----PYIAVVTNVDWEHVDIFPDEEAVKAIFRRFLKQIRVGG 263

Query: 222 TIFLNYDDSFFELLKAKSHALGIK-------------------TIYSFGKSKNADFQLRK 262
            + L  D +    L   +    +                     I +FG S+  ++    
Sbjct: 264 HLILCGDSAGACSLLDDTEESTVADHSSGKLSTLNSDKCSDGYRITTFGISRTNEWHALS 323

Query: 263 WKQCSE-QSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTAD----VDTAIKA 316
            +  S+  S   +  +G  +  +     G H   N L  +  V  L +D     ++    
Sbjct: 324 IRPNSQGGSDFVLCHRGYPVANITLQIPGVHNVLNSLAVIATVMALVSDGRQSYESINCV 383

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPH 366
               +   G  +R+          LI + Y  +P  ++A +    Q            PH
Sbjct: 384 KIHLNNFVGVSRRFELIGTVCGC-LIYDDYAHHPTEVRAVLQAARQRFPLKALLVVFQPH 442

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              R  A+  D       S +  + + E+ +  
Sbjct: 443 TYSRLAALKSDFA--TAFSDADQVLVTEIYAAR 473


>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
 gi|118595701|sp|Q31I61|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
          Length = 449

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 113/351 (32%), Gaps = 44/351 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+AITGS GK+T   ++  AL          G+        L L   P + D  + E
Sbjct: 99  GKPIVAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIGCP---ALDLLTHPTEFDVYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A +  I+  H+  +  +E+   AK  I    E      L 
Sbjct: 156 LSSFQL----ETTYSLQTIAATVLNISEDHMDRYLALEDYIQAKMTILNNTE---LAVLP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D     + +             FG +       +++    +     +  +  +   V  
Sbjct: 209 LDFERVGIARPGDE-------VRFGLNYAEALPPKEYGIVMKNGQAWLGWEDHASVPVTA 261

Query: 287 GI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +                V    +G   R +  L Q     I++
Sbjct: 262 MAQQGLHHQLNALAMMALCRPFDLSD---AVFEKVLKTFKGLPHRTQVVLEQEGVRWIND 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSL 398
           S   N   + A ++ +  I    +G+ I + G      D  E+G+              +
Sbjct: 319 SKGTN---VGATVTAIESIKETLDGQVILIAGGVGKEADFNELGQ------------AVV 363

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +     L G     +   LP+   +   +T+    L  ++    GD V+ 
Sbjct: 364 QSCRQAILFGQDKAIIAQQLPQE-KIQLVDTLSEAVLLAKTIAKSGDAVLF 413


>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 456

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 20/296 (6%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+  +++   SL IP+       G  +      A   SK+ I+A+TG+ GKTTT  +LT 
Sbjct: 69  VDRIVISPGISLDIPIVKAAQARGIDVVSEVELAYEVSKSPIVAVTGTNGKTTTTTLLTK 128

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    K     G+  + +     +A       F + EL    L  I+      RP  A+
Sbjct: 129 VLEGSGKPVRVGGNIGDSLSE---VAYSMPAGGFLVAELSSYQLETIKHF----RPIGAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKT 246
           +  I P HL+    +E   +AK  IFE   K+  + LN DD     +  +A SH L I  
Sbjct: 182 MLNITPDHLARHKTMENYIAAKERIFENQLKSDYLVLNIDDPIVADMEHRAPSHILQISQ 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +    +N  +         +       +  K +    H  G H  +N+L  + +   L
Sbjct: 242 KQTV---ENGAYYANGQCYVVKNGVATAVIGDKDI----HIPGSHNIENILTVIALTYAL 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              V    + +S FH  E R +R +        T  ++S   N  S+  A+    +
Sbjct: 295 GVPVVEIHRIISEFHGVEHRLERVKTI---DGITFYNDSKATNVDSVVKALESFDK 347


>gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
           [Bifidobacterium bifidum PRL2010]
 gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 476

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 145/401 (36%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +       IPV+   +V  A      +AR    A  + ITG+ GKT+T EM +  L
Sbjct: 66  RTPFILEAQRRGIPVYS--EVELAWRLRVDSARTGRPAPWVGITGTNGKTSTTEMTSAML 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +       +G+    IG  ++ A +  D D    EL    L      T  +    A IT
Sbjct: 124 CADGLVAPAVGN----IGKAVSHAAVDPDNDALCVELSSFQL----HFTDSLALDCAAIT 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI-Y 248
            IA  HL    GIE  A+ K+++F  + +   +  N DD     L + +H A G + I +
Sbjct: 176 NIADDHLDWHGGIEAYAADKSKVFRNVRR--ALVFNADDRRVSALASAAHTAEGCRRIGF 233

Query: 249 SFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLM 298
           + G  +     +       +          + +   ++   H       +  H+  + + 
Sbjct: 234 TLGVPQPGQIGVDDGWIVDRSGVAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMT 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAA 356
            L +   +  D+D A+ AL  F P   R +    A   + G    ID+S   N  + +A+
Sbjct: 294 ALALALGMGVDLDKALAALKAFAPGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARAS 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +S  +        + +  +      G   +    D A  +         + G     + +
Sbjct: 354 LSSFA-------PKSVVWIAGGLAKGSRFEQLVADQAHTIKAA-----VIIGKDQKPMLE 401

Query: 417 ALPRS--------IHVHYSET-MDGLFLFIQSSLVDGDVVV 448
           A   S        I    S+T M        +    GDVV+
Sbjct: 402 AFAASAPGIPLTVIEPEPSDTVMARAVDAAGAYAGTGDVVL 442


>gi|328957125|ref|YP_004374511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
 gi|328673449|gb|AEB29495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
          Length = 470

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 44/333 (13%)

Query: 125 MLTIALSSIK-KTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           M+   L++ + K +A +     +IG P +L A+     D  I EL    L  I  L    
Sbjct: 138 MIAELLNAERSKGHAYVAG---NIGTPASLVAQKATSDDEIIMELSSFQLMGITEL---- 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPHIAVIT I  AHL      EE  +AK  I +   +   + +N+D      L  +S A 
Sbjct: 191 RPHIAVITNIYSAHLDYHGTREEYVAAKMSITKNQTEEDYLIVNWDQPELRELSQQSKA- 249

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLM 298
              TI  F + +       L+            +  QG+ +  +      G H  +N + 
Sbjct: 250 ---TIVPFSRKEILETGVYLQDDV---------IYYQGEPVMAKETILIPGDHNVENAMA 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +  +L  +      +L  F   +    R +           ++S   N  + + A+ 
Sbjct: 298 AIAVAKLLNQENGVIRTSLEQFTGVK---HRTQFVREWNERRFYNDSKATNTLATENALK 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                        I +L    + G             +    +  + + G   + L +  
Sbjct: 355 GFDV--------PIILLAGGLDRGNNFDEL-----IPVMNKKVKALIVFGETAMKLSETG 401

Query: 419 PRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    +   + ++             DV+++
Sbjct: 402 TEAGIPTIISVQNVEAAVPVAYELSEPNDVILL 434


>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 432

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 127/350 (36%), Gaps = 48/350 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +I ITGS GK+T  ++LT  ++      A  G+          L  +   +++ + E
Sbjct: 100 KAPVIGITGSNGKSTVTKLLTQMIADSGMLVAIGGNIGIP-----ALDCLNEKIEYYVLE 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L  +      V+  I P HL  +S  E    +K  +++  + +    +N
Sbjct: 155 LSSYQLDYSYHLNLIT----GVVLNITPDHLDRYSSFEYYIHSKLSLYQYCQYS---VVN 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS---KNADF---QLRKWKQCSEQSWMEVQLQGKS 280
            D+                 +  FG +   +  DF            + +   + +    
Sbjct: 208 LDEPLIPK---------QTNVKYFGINIPKRANDFGTVTCHNICYLLKGNNTLMSVDE-- 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  IG H  +N+L  L +   +   + + I+++  F   E    R    + +    
Sbjct: 257 ----VQLIGEHNTKNILAALALGDQIKLPISSMIQSIKNFKALE---HRLEWVIKKQNID 309

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  S   AI  L     +     + +LG + +     +  +  L + ++   
Sbjct: 310 YYNDSKATNAISTIIAIQTL----MYKHQNIVLILGGIAK-----KEDYTLLFKFINK-G 359

Query: 401 ISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I+ V L G      L++    SI    + TM       +S + +G V+++
Sbjct: 360 ITGVVLIGQSTRQFLQEINTNSIIYANTNTMQEAVNIARSMISNG-VILL 408


>gi|254465031|ref|ZP_05078442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
 gi|206685939|gb|EDZ46421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
          Length = 463

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 124/420 (29%), Gaps = 71/420 (16%)

Query: 59  HAVQKGA---GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARL 104
              + GA      ++ +  +  +     PV          VD+ +G   +          
Sbjct: 57  DLHKAGAFDDVAALITSPGIPHLYPKPNPVIRAALEAGVPVDNDIGLFFRSFADADWQMH 116

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                ++A+TGS GK+TT  +L   L    +     G+    +         P +    +
Sbjct: 117 DQPPRVVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDP----PGEGGVVV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---- 220
            EL          L   + P +AV T ++P HL    G+    +AK  +F   ++T    
Sbjct: 173 LELSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEADRTAPSS 228

Query: 221 ------GTIFLNY-----DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                 G  +        DD        K    G +     G        L ++++  + 
Sbjct: 229 ASTRTRGCFWRPAVRRASDDRVIASRARKLTGPGWQVFARKGF-------LSEYRKGRQA 281

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + ++++        +    G H  QN          L         A++ F    G   R
Sbjct: 282 ASIDLR-------EMTGLPGAHNHQNACAAYAAARTLGLAPRVIGDAMATF---PGLPHR 331

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +          +++S   N  S   A+S    I     G          E     ++  
Sbjct: 332 SQTIAEAAGVRYVNDSKATNLDSAVKALSAFKNIRWICGG---------LEKDGGLEALK 382

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                     N+   ++ G        AL   +      TM        +    GD V++
Sbjct: 383 GQTG------NVQKAYVIGREAAGF--ALQLDVEAEVCTTMAAAVERAMADAQAGDTVLL 434


>gi|225375617|ref|ZP_03752838.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
 gi|225212596|gb|EEG94950.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
          Length = 467

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 120/347 (34%), Gaps = 34/347 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GKTTT  ++   +++       +G+         ++A    +    + E
Sbjct: 122 KGRIIAITGTNGKTTTTSLVGEIMANYFDDVKVVGNIGIPYT---SVAADTTEDTVTVAE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L      TH   P +  I  I P HL+    +E     K  I +      T  LN
Sbjct: 179 ISSFQL----ETTHEYAPEVTAILNITPDHLNRHHTMECYIETKESITKNQTAGDTCVLN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSME-VV 284
           Y+D                 +  F   +  +   +      E  +  +     K +    
Sbjct: 235 YEDEVLRRFGETLQT----KVVFFSSKRKLE---KGLYLDGEDIFYADGTTDTKVINVNE 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G H  +N++  +G+       +D  ++ L  F   E    R      +      ++
Sbjct: 288 LNILGKHNYENVMAAVGMSVSFGVPMDKIVEVLKRFQAVE---HRIEYVTEKRGVKFYND 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   NP    AAI  +  ++     R   ++G     G   QS + +  E      +  +
Sbjct: 345 SKGTNPD---AAIQGIRAMN-----RPTLLIGG----GYDKQSEYDEWIESFDG-KVKKL 391

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     + +   +     V   +T +       ++ V GD V++
Sbjct: 392 VLIGQTKEKIAECAKKHGFEDVILCDTFEEAIDTCYANAVSGDAVLL 438


>gi|89255915|ref|YP_513277.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314397|ref|YP_763120.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501903|ref|YP_001427968.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009183|ref|ZP_02274114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367275|ref|ZP_04983302.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953041|ref|ZP_06557662.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|295313756|ref|ZP_06804332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|89143746|emb|CAJ78948.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica LVS]
 gi|115129296|gb|ABI82483.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253092|gb|EBA52186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252506|gb|ABU61012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 456

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  +   + + +      +  +       N+D  +   K   + S  E+  + G S+EV 
Sbjct: 222 NAKNDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNSVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|119026121|ref|YP_909966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|226711884|sp|A1A2F1|MURD_BIFAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118765705|dbj|BAF39884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 479

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 138/401 (34%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +      +IPV    +V  A      +      A  I ITG+ GKT+T EM +  L
Sbjct: 68  RTPFILEAQKRNIPVMS--EVELAWQLRVNSNTTGKPAQWIGITGTNGKTSTTEMTSEML 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++       +G+    IG  ++ A +    D    EL    L      T+ +    A IT
Sbjct: 126 TACGLAAPAVGN----IGKAVSHAAVDPANDVLCVELSSFQL----HFTYSLELDCAAIT 177

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            IA  HL    GIE  A+ KA++F  ++K   +  N DD     L   +          F
Sbjct: 178 NIADDHLDWHGGIENYAADKAKVFHNVKK--ALVYNADDERVTKLAFAAQTAPECRRIGF 235

Query: 251 GKSKNADFQL----------RKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLM 298
             ++  D Q+                      +V        +      +  H+  + L 
Sbjct: 236 TLAEPKDGQIGVKDGWIVDMSGIAGGEAGKPFQVAKVTDFTHLTEPDGTVYPHLLADALT 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAA 356
            L +V  L AD D A+ AL  F P   R +    A   + G    +D+S   N  + KA+
Sbjct: 296 ALALVLGLGADKDKALAALKQFTPGGHRIQTVAVAKTSDGGTIRFVDDSKATNAHAAKAS 355

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++  +        + +  +      G   +    D A  +         + G     + D
Sbjct: 356 LNSFAD-------KSVVWIAGGLAKGSRFEQLVADQARTIKAA-----IIIGKDQQPMLD 403

Query: 417 ALPRS--------IHVHYSET-MDGLFLFIQSSLVDGDVVV 448
           A   S        I    ++T M        +    GDVV+
Sbjct: 404 AFKASAPDIPMSIIDPTDNDTVMARAIDAAGTYAQSGDVVL 444


>gi|319953738|ref|YP_004165005.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Cellulophaga
           algicola DSM 14237]
 gi|319422398|gb|ADV49507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           algicola DSM 14237]
          Length = 444

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 114/348 (32%), Gaps = 34/348 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A II ITGS GKTTT  ++   L S        G+  +     +       D ++ + 
Sbjct: 100 TDAKIIGITGSNGKTTTTMLVNHILKSEGLHVGMAGNIGDSYAKMV----AENDFEYYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I       +PHIA++T I+P HL  +    E   ++K  I E   +     
Sbjct: 156 EISSFQLDGI----VDFKPHIAILTNISPDHLDRYDYKYENYIASKFRIAENQTEDDYFI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            + DD        K         YS      + A    +     +    ++++    S+E
Sbjct: 212 YDADDKDLTDWLKKHPVKAKLMPYSIERTIEEGAFSTNKDITITTNNDTLKMKTDSLSLE 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +       ++    +T   +++ F    G   R    L       I
Sbjct: 272 ------GKHNLKNTMAASTASKLIGIRKETIRNSVANFQ---GAEHRLEKVLKIHHVEYI 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+  +   +         V G   + G   +S        L    + 
Sbjct: 323 NDSKATNVNATYYALDSVRTPTV------WIVGG--VDKGNDYKSLMP-----LVREKVK 369

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
            +   G     + +A    + +      M             GD V++
Sbjct: 370 AIICLGKDNTKIIEAFGNVVDLIVEAYDMSETVKIAYKMAERGDTVLL 417


>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 467

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 133/376 (35%), Gaps = 49/376 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+A+TGS GKTTT  +++    +  +     G+    +   L +       D  + EL  
Sbjct: 121 IVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAAL---LPMLPEVAPEDVAVVELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     ++    P+IAV+T + P HL +   ++E   AK  I    ++     L Y++
Sbjct: 178 FQL-----ISMHSSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGI 288
                +++      +           A  +      C +E   +   L  K +++     
Sbjct: 233 EISRSMQSDCKGKQVWFTRLHDTDNGAFLRKEDNMLCMAEDGVVTPFLAQKDVKLR---- 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+L     V      V+   K  S F   E R +  R           ++S   
Sbjct: 289 GLHNIENLLAAAAAVWG-EVPVEAIQKVGSTFTGVEHRIEPVRTL---DGVLYYNDSIGT 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P    A +   +Q       + I + G   +           +A      ++ ++ L G
Sbjct: 345 SPTRTIAGLRSFNQ-------KVILIAGGYDKHIPYEPLAPEVVA------HVKNLVLMG 391

Query: 409 FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFY-- 458
                ++ A+    +       + +++ M       ++    GD++++  +S S   Y  
Sbjct: 392 ATGPRIEKAVREDPNFNEAELPIQHADNMQHAVELARACAKPGDIIILSPASASFDLYPN 451

Query: 459 ---------RLINLLL 465
                    +++N L 
Sbjct: 452 FEVRGREFKKIVNELK 467


>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-7]
 gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-7]
          Length = 439

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 155/448 (34%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       AF    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDC-RYLVQAKQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                + ++T  V +   + I V G  DV   L    +A R   K  ++ ITGS GK+T 
Sbjct: 71  IISPGIAIDTPEVRAALDMGIEVIG--DV--ELFAREIADR---KPCVLGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L       A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMLREAGMAVAVGGNIGIP-----ALDLLTENADIFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               +    +   H+  +S ++    AK  ++     + +I  N DD+    +  +    
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ---SRSIIFNRDDAL--TIPTEPMNQ 229

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLG 301
                 SFG +     +  +W  C  + +       + M +     IG H   N+L  + 
Sbjct: 230 N-----SFGLAPP---EGDEWGICDSKIY---HGHSEIMPITEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V  +  D     K    F    G   R      +   T +++S   N  +  AA+  LS
Sbjct: 279 LVYAVGVDKQVMAKVARTFT---GLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G   +  + S      L E L    ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAGGDGKGADFSP-----LVEPL--TKVTHLITLGRDGNKVAALKEGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I V   ++M             GD+V++
Sbjct: 385 IKV---DSMAAAVAKAAELATSGDIVLL 409


>gi|317483069|ref|ZP_07942070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516664|emb|CBK70280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum F8]
 gi|316915475|gb|EFV36896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 481

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 113/304 (37%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   ++   I  N  D+    L A +  A G + + 
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFHNAKR--AIVYNAQDAKVSELAAAAQTAEGCRKVG 237

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 238 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +     A+  G    +D+S   N  + +A+
Sbjct: 298 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARAS 357

Query: 357 ISVL 360
           +S  
Sbjct: 358 LSSF 361


>gi|182420305|ref|ZP_02951534.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237666435|ref|ZP_04526420.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182375900|gb|EDT73492.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237657634|gb|EEP55189.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 869

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 151/403 (37%), Gaps = 59/403 (14%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV  A+  +    R      +I++TG+ GKTTT  M+   L  +  T     +   +I 
Sbjct: 460 RDVGKAIVDMLYEGRPS-NIPVISVTGTNGKTTTTRMIGHVLKMMGMTTGITSTDGIYIN 518

Query: 149 V------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                              +  DV+  + E   +  G +R         +AVIT I   H
Sbjct: 519 DKCIHKGDDSGFNSAKTLLLNRDVEAVVLE--TARGGLVRRGLAYDLADVAVITNITNDH 576

Query: 197 --LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
             L     +E++   K+ + E ++K G   +N DD + + +  +   +  + IY F KSK
Sbjct: 577 LGLDGIDSMEDLMFVKSLVGEEVKKNGYTVINADDKYSKRILDR---ISCEKIY-FSKSK 632

Query: 255 NADFQLRKWKQCSEQSWME-------------VQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           + +             ++E             + +    + + ++GI  +  +N +    
Sbjct: 633 DNELIKENINNGKIAVFIEDNNICVINNHRKYLIISIDELPISYNGILTYNIENAMAACA 692

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L  D     K  S F P +    R+      G   ++D  Y  N    KA +S ++
Sbjct: 693 ALVGLNIDYCMISKGFSDFMPCDDNEGRFNMFEYYGRKVILD--YGHNIEGYKAVLSCIN 750

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGF-- 409
           ++      R I V+G     G+   +   ++ E+   Y +  + +           G   
Sbjct: 751 KLKTKN--RLIGVVGVP---GDRQDNVIKEIGEICCEY-LDEIIIKEDKDRRGRSIGEVS 804

Query: 410 ---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  LK++  +++ V Y + +D L   I+      D+++V
Sbjct: 805 QLLKISILKNSNKKNVKV-YLDEVDALEYAIK-ISKKDDIIIV 845


>gi|313888463|ref|ZP_07822130.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845492|gb|EFR32886.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 439

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 136/360 (37%), Gaps = 39/360 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ + ++ R      ++A+TG+ GKTTT  +L   L  + KTY  +G+    I   L + 
Sbjct: 86  ISDIELSYRNLKTKNVLAVTGTNGKTTTTTILGDILRRVAKTY-VVGNIGRGI---LEIT 141

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R     D+ + E     L      T   +PHIAV+T +   HL      +    AK +IF
Sbjct: 142 REAKSEDYVVIEASSFQLEN----TVDFKPHIAVLTYVTSDHLDWHKTKQNYVDAKFKIF 197

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  ++     LNY+D   + L  K +    K  Y F   K +     +     +Q  +  
Sbjct: 198 KNQDENDFAILNYED---KELAEKYNLKAEK--YYFSMEKTS-----EKGAYLDQGKIYF 247

Query: 275 QLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               K+ E++        G H  +N++  +    +L  D+D   K++  F   E    R 
Sbjct: 248 TDGDKTEEILDVKDIKIPGDHNIRNIMAAVIACKLLKIDLDVIKKSIVSFTGVE---HRI 304

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                       ++S   NP S + A++ +       +G  + + G   +  +       
Sbjct: 305 EFVREVDGVKYYNDSKGTNPDSTEVAVAAM-------DGDVVLIAGGYDKGADFDNLIEK 357

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 S   +    L G     + ++     +  + +E +       +   + GD V++
Sbjct: 358 ------SKDKLKTAILFGQTAEKISNSCKNHGVEFYITEDLKKAVELAKKLAIKGDDVLL 411


>gi|71066594|ref|YP_265321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           arcticus 273-4]
 gi|118595676|sp|Q4FQ21|MURD_PSYA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71039579|gb|AAZ19887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter
           arcticus 273-4]
          Length = 476

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 115/339 (33%), Gaps = 30/339 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+AITGS  K+T   ++    +         G+    IGVP         ++  + E
Sbjct: 114 TVPIVAITGSNAKSTVTTLVGQMAADAGINVGVGGN----IGVPALSLLSNDKMELAVIE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +  L       +A +  ++P HL     +     AK  IF+G +    + +N
Sbjct: 170 LSSFQLETVTNLGA----QVATVLNMSPDHLDRHGDMLGYHQAKHRIFQGAKS---VVIN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D+    L + S         S G               + Q+++    +         
Sbjct: 223 REDALTRPLVSDSLPR-----LSTGIHAPNKGHYGLITDAAGQTYLARGTERLISADKLK 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N    L +  +    +++ +   S      G   R +           ++S 
Sbjct: 278 IKGRHNLLNAQAALALGELAGLPLESML---STLQQFAGLEHRCQYVATIAGIDYFNDSK 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S  AA+  L  +    +G+ + +LG   +  +       +L+  ++ Y +S V  
Sbjct: 335 GTNIGSTMAAVEGLGAVYAPKDGKLLLILGGQGKAQQFG-----ELSPFINQY-VSQVLF 388

Query: 407 SGFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSS 440
            G     +        L   + +H  +T++  F  I+  
Sbjct: 389 IGEDSQQIEQHLRAAGLSDEVSLHQCQTLENAFSMIEQV 427


>gi|298252627|ref|ZP_06976421.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis 5-1]
 gi|297532991|gb|EFH71875.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis 5-1]
          Length = 520

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 125/403 (31%), Gaps = 57/403 (14%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L S  T + + G+ GKTTT  +L+  L  ++         +    I      
Sbjct: 121 HRSDILALLLSAKTGVTVAGAHGKTTTSSLLSHILTVAAAGDLADPSYAIGGSIQAADGT 180

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                    GI  +  +   +  F      P IA++T     HL ++   E    A  E 
Sbjct: 181 VLDGGHAGNGIVMVAEADESDGSF--EKYSPSIAIVTNAEADHLDHYGSSERYREAFVEH 238

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------------ADF 258
                    + +  +D     +        +    ++G                   A  
Sbjct: 239 VSHAINN--VIICAEDEGARKVLEAMPDNILNKTIAYGNLDTWSMKVSSRVQKLAMFASI 296

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVV----------HHGIGYHMAQNMLMTLGIVSILTA 308
           +    +  S +    + L  K ++                G H A N    +    +L  
Sbjct: 297 EHENEQAVSGREMFTLVLPEKILDEHAKCSNKVQVSLLIPGLHNALNASAAIVAAVLLGM 356

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + + A ++   F    G  +R+         T++D+ Y  +P  + A +    +      
Sbjct: 357 NPEDAARSAESF---RGASRRFDIRGCVDGVTVVDD-YAHHPTEIAALLRAARRKYTSST 412

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----------------FHVL 412
            R   VL     +   +Q+F  + A+ L+L     V ++G                  ++
Sbjct: 413 LR---VLFQ-PHLFSRTQAFANEFAKSLAL--ADDVIVTGIFPAREKQEDFPNINAETIV 466

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               +    + +   + M    L +      GDV++   + S 
Sbjct: 467 KAAKSQNLDVKIEAVDDMREAALKLTLRAKSGDVLLTVGAGSI 509


>gi|254476425|ref|ZP_05089811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
 gi|214030668|gb|EEB71503.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
          Length = 468

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 123/411 (29%), Gaps = 51/411 (12%)

Query: 59  HAVQKGA---GLVVVNTDMVASIGSLSIPVFG--------VDDVLGALNKLAV---AARL 104
             ++ GA      +V +  +  +     PV          VD+ +G   +        + 
Sbjct: 57  DLLKSGAFDDVAALVVSPGIPHLYPKPNPVIRAALVAGVPVDNDIGLFFRSVATRGWEQY 116

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                I+A+TGS GK+TT  +L   L    +     G+    +         P      +
Sbjct: 117 DQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDP----PGSGGVVV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL        R LT    P +AV T ++P HL   +G+    +AK  +F          
Sbjct: 173 LELSSYQTDLARALT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPD-RAI 227

Query: 225 LNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---- 279
           +  D+     L  + S A     +     S+        W+  + + ++    +G+    
Sbjct: 228 IGVDEDEGLYLAGQLSEAASDDRVIRISASQK--LTGPGWQVFARKGFLSEYRKGRQAAS 285

Query: 280 -SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +  +    G H  QN          L         AL+ +    G   R +       
Sbjct: 286 IDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASY---PGLPHRSQTIATHAG 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  S   A+     I     G          E      +      +    
Sbjct: 343 VRYVNDSKATNLDSAAKALGAFENIRWICGG---------LEKEGGLDALRGQAGK---- 389

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   ++ G        A+   +      TM        +    GD V++
Sbjct: 390 --VRKAYVIGREAAGF--AMQLDVEAEVCITMAQAVARASAEAEPGDTVLL 436


>gi|261854928|ref|YP_003262211.1| UDP-N-acetylmuramate [Halothiobacillus neapolitanus c2]
 gi|261835397|gb|ACX95164.1| UDP-N-acetylmuramate [Halothiobacillus neapolitanus c2]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 129/370 (34%), Gaps = 27/370 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
              ++ + G+ GKTTT  ML   L          IG    + GV   L   P    F + 
Sbjct: 101 DKFVLGVAGTHGKTTTSSMLAWILEQAGMAPGFLIGGVPGNFGVSARLGETP----FFVI 156

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +  RP   ++  +   H   F  +  I    A     +   G +
Sbjct: 157 EADEYDTAFFDKRSKFLHYRPRGVILNNLEFDHADIFPDLAAIERQFAHFLRLVPNKGLV 216

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +       E +  +        I  FG   +A    + W+   E  W+E Q  G   ++
Sbjct: 217 VMADATPALERVVEQG---CWSPIERFGARDSA----QPWRLVGEAIWLEGQHLG---DM 266

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + IG H   N L  L +        +  + AL+ F       +R +        T+ D
Sbjct: 267 PANIIGRHNRLNALAALALARFAGVPPEQGLNALAGFVGVA---RRLQNRGTVAGVTVFD 323

Query: 344 ESYNANPASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +P ++   I+ L +   +    GR IAV+             H  LAE L+  ++
Sbjct: 324 D-FAHHPTAIIETIAALREQQSASPHSGRLIAVVDPRSNTMRAGVHQH-QLAEALAGADL 381

Query: 402 SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                      + ++AL      + +S T+D +   + +     D ++V  SN   F  +
Sbjct: 382 VVFHSPANLGWSPREALASLGTRIRFSPTVDAVLTDVLALAQPDDKILVM-SNGS-FDGV 439

Query: 461 INLLLEEFPA 470
              LL+   A
Sbjct: 440 HQRLLDALAA 449


>gi|167758768|ref|ZP_02430895.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
 gi|167663508|gb|EDS07638.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
          Length = 450

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 114/355 (32%), Gaps = 47/355 (13%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K Y        +IG P T +A    +    + E+    L  I       RP +
Sbjct: 125 SLLGEIMKNYQDDVYIVGNIGNPYTAVAGQMNENTITVAEMSSFQLESI----VDFRPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I    P HL+    +E   +AK  I           LNY+D        K  A     
Sbjct: 181 SAILNFTPDHLNRHHTMEAYVNAKKNIARNQGPQDYCILNYEDGLTREFGKKVKA----Q 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGI 302
           +  F   +    +L K     + +   +   G+ + V        +G H  +N++  + +
Sbjct: 237 VLYFSSQR----KLEKGIYLEDGNI--IYRDGEEVSVCRVDELQLLGTHNYENVMAAVAM 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++T  K++  F   E    R      +      ++S   NP +    I  +++
Sbjct: 291 AYVYGVPMETIRKSIKEFKGVE---HRIEYVTEKNGVAYYNDSKGTNPDAAIKGIQAMNR 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +    G            G    S + D  E         V L        KDA     
Sbjct: 348 PTVLIGG------------GYDKDSAYTDWIESFDGKVKKLVLLGATKEKIAKDANACGF 395

Query: 423 HVH-YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             + +++T +   L      + GD V++    +S             F  ++N L
Sbjct: 396 KDYLFADTFEEAVLTAAKIAMPGDAVLLSPACASWDMFPSYEVRGEKFKEIVNSL 450


>gi|91785243|ref|YP_560449.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase, MurC [Burkholderia
           xenovorans LB400]
 gi|91689197|gb|ABE32397.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase, MurC [Burkholderia
           xenovorans LB400]
          Length = 464

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 126/374 (33%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPGIGRIVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E +  +        +  FG                 E     V    + +  V 
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWETLPAEDGVPVDE--RFAVYHNSERVGAVE 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 277 WQVQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVK---RRMEVRGSVDGVTVYDD 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  ++ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 334 -FAHHPTAIETTLAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 388

Query: 404 VWLSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P        + +D L   +  +   GD ++V  SN  G
Sbjct: 389 VFGYGAPTGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHTARPGDQILVM-SNG-G 446

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 447 FGGVHQKLLDALSA 460


>gi|119713342|gb|ABL97406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured marine bacterium EB80_02D08]
          Length = 435

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 131/371 (35%), Gaps = 45/371 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
           K  ++AI+G+ GKTTT  MLT  +          +G  +N+I    +L          + 
Sbjct: 100 KKKVLAISGTHGKTTTSYMLTHIMLDQGNDIGFLVGGISNNISGSASLG----SHKTFVI 155

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +   P   VI+ I   H   F+ +E+I      + + +   G I
Sbjct: 156 EADEYDSAFFDKRSKFIHYSPSTLVISNIEFDHADIFNNLEDIKRQFHHLLKIIPLDGNI 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282
               DD   + L      +    +   G    AD+  +            +  + K    
Sbjct: 216 IYFGDDKNTKELIDM--GVWSHEMIVNGNIIKADYLNK-----------TLSYKDKRYLL 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG H  +N +  +         ++ +I +L  F   +   +R             
Sbjct: 263 GELPLIGEHNFKNYIAAILAAKTDGISIEDSINSLKSFSGVK---RRMESKGTFDGIKFY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNI 401
           D+ +  +P +++ +   L         ++I  L    E+G  +  S    L+ + S+ ++
Sbjct: 320 DD-FAHHPTAIEFSSDALRS---KYPTKKILGL---IELGSNTMASGSHGLSILNSVKSL 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSCGFY 458
             V       L   D L  +  ++            +S ++D D+VV+   K+S      
Sbjct: 373 DDVIW-----LDYNDVLKEAKGIYCYSNSKDFISSAKSMMLDYDIVVLMTNKNS-----Q 422

Query: 459 RLINLLLEEFP 469
           ++I+ L++ F 
Sbjct: 423 KIIDPLIKSFE 433


>gi|167036439|ref|YP_001664017.1| hypothetical protein Teth39_0008 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751448|ref|ZP_05492326.1| protein of unknown function DUF1727 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320114865|ref|YP_004185024.1| hypothetical protein Thebr_0008 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855273|gb|ABY93681.1| domain of unknown function DUF1727 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749667|gb|EEU62693.1| protein of unknown function DUF1727 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319927956|gb|ADV78641.1| domain of unknown function DUF1727 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 451

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 137/392 (34%), Gaps = 76/392 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + ITG+ GKTTT  ++   L++  K         N   G+  TL +    +   I +  +
Sbjct: 51  VIITGTNGKTTTSGLIAHILTTSGKSVVHNKEGANMKTGIATTLIKNSNFLGNLIKDAAV 110

Query: 170 SHLGE--IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             + E  +  +   ++P+I +IT      L  +  ++       +    L +   + LN 
Sbjct: 111 FEIDEANMPIVIEDIKPNIVIITNFFRDQLDRYGELDTTVEKVKKALLKLPQESIVLLNA 170

Query: 228 DDSF----FELLKAKSHALGIK-------------------------TIYSFG------- 251
           D+ F     + +K+K    GI+                             +G       
Sbjct: 171 DEPFTASIGDEIKSKVFYYGIEDNIEGINSSSFEQKYCPICGHKYEYRRIYYGQLGDYYC 230

Query: 252 -----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                K  N+ F+        +     +  + K   V    IG +   N+L  +    +L
Sbjct: 231 PNCGKKRPNSHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLYNVYNLLAAISAGILL 290

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP- 365
             D +T +KA   + P EGR ++ +    +    LI      NP   ++ +++LSQ +  
Sbjct: 291 NIDFNTILKATESYWPIEGRLQKTKIKNKKAIINLIK-----NPIGFESTLNMLSQFNKP 345

Query: 366 ----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                     + +GR ++ L D            ++L + LS   ++++  SG     + 
Sbjct: 346 LNLLISINDNYADGRDVSWLWD------------VNLEDFLSKTKVNYIITSGLRAEDMA 393

Query: 416 DALPRS----IHVHYSETMDGLFLFIQSSLVD 443
             L  +      +    ++D     I     +
Sbjct: 394 VRLKYANFDINKIKVINSIDKALDTISELTKE 425


>gi|323144096|ref|ZP_08078736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416111|gb|EFY06805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 440

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 122/361 (33%), Gaps = 39/361 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+ G+ GKTTT  ML   L +        G     I      +    +  + + E
Sbjct: 90  NKKVLAVAGTHGKTTTTAMLAWILEANNLN---PGFLVGGIPENFGYSARATESPYFVIE 146

Query: 167 LGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  +   P + ++  +   H   F+ +++I      +   +   GTI 
Sbjct: 147 ADEYDCAFFDKRSKFLHYHPFVQILNNLEFDHADIFNSLDDIKKQFHHLVRTVPGNGTIV 206

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--E 282
           + Y     E +        +K I             +  KQ  + S   V   G     E
Sbjct: 207 MPYAYPALEDVLKMGVWTPVKRI-----GGKDGLHAKLIKQ--DGSVFAV-YNGAEFICE 258

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G +   N LM     + +  D+  A+ +L  +   +   +R      +G   + 
Sbjct: 259 VNAQFCGEYNVSNALMAAAAAAAVGVDLKKALLSLETYKMPK---RRMEYKGCEGNVVVY 315

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSL 398
           D+ +  +P ++K  ++ L       + R IAV       M  MG   +      A     
Sbjct: 316 DD-FAHHPTAIKLTLNGLRA-KVGKDKRIIAVFEPRSNSMK-MGANKEFLAESFA----- 367

Query: 399 YNISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            +    ++         V +L++  P  +HV +    D L   I S+   G  V+V  SN
Sbjct: 368 -SADEAFIYAPKEVVWDVESLEEKSPTPLHVEH--DFDVLLNKIVSASPAGSTVLVM-SN 423

Query: 454 S 454
            
Sbjct: 424 G 424


>gi|90413038|ref|ZP_01221036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
 gi|90326053|gb|EAS42492.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
          Length = 447

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 134/377 (35%), Gaps = 56/377 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T   ++              G+          L  +  + D  + E
Sbjct: 107 TKPVVAITGSNGKSTVTSLIGEMAKEASINVGVGGNIGF-----AALDMLANEHDLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    AV   ++  H+  + GIE+ + AK  IFE  E       N
Sbjct: 162 LSSFQL----ETTSSLELKAAVYLNLSEDHMDRYDGIEDYSLAKMRIFEHAE---LAVYN 214

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD       A         I SFG     D+ L       E+ ++ V  Q         
Sbjct: 215 RDD------LATLPTSFSHKITSFGFDNQ-DYGL--VTLDGEE-FLAVDKQPIMKTNDIA 264

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  L +   +  D   A +A        G   R +  +NQ     +++S 
Sbjct: 265 LVGRHNVANSLAALALADAVNIDHQAACRA---LQRYNGLAHRCQLVVNQHDVKWVNDSK 321

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+  L     +  G+   ++G   +  + S     +L  VL+  N+  ++ 
Sbjct: 322 ATNLASTLAALKGL-----NLPGKLHLLVGGDGKGADFS-----ELKPVLADLNV-QLYC 370

Query: 407 SGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG------- 456
            G      ++L DA         +E M         +   GD++++  S +C        
Sbjct: 371 FGRDGNQFMSLVDA------PICTEAMAEAMTIAADTAQKGDMILL--SPACASFDQFPN 422

Query: 457 -FYRLINLLLEEFPAIQ 472
              R  +  +E+  A+Q
Sbjct: 423 FMAR-GDAFVEQAKALQ 438


>gi|300114771|ref|YP_003761346.1| UDP-N-acetylmuramate [Nitrosococcus watsonii C-113]
 gi|299540708|gb|ADJ29025.1| UDP-N-acetylmuramate [Nitrosococcus watsonii C-113]
          Length = 463

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 123/357 (34%), Gaps = 33/357 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  +L   L          IG    + G+   L R P    + + E  
Sbjct: 105 VLAVAGTHGKTTTSSLLAWILEYAGHRPGYLIGGVPQNFGISARLGRSP----YFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  RP   ++  +   H   F  +E I      +   +   G I + 
Sbjct: 161 EYDTAFFDKRSKFIHYRPRTLILNNLEYDHADIFPHLEAIQQQFHYLVRTVPNNGLILVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             D   + L    +      + +   +      L       + S  EV  +      V  
Sbjct: 221 SGD---KALATVLNMGCWTPVMNMDIAGGISSALAASAVADDGSDFEVWYENSCQGRVRW 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G+H   N L  +G        +D A +AL  F    G  +R          T+ D+ 
Sbjct: 278 PLLGHHNVANGLAAIGAAHHSGVPIDQACQALERFQ---GVRRRLEIYGKVNGVTIYDD- 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++   ++ L   +  G+ R IAVL    E    +     H D LA  L+L    
Sbjct: 334 FAHHPTAISKTLAGLR--ARVGKARIIAVL----EPRSNTMKLGIHKDSLAPALAL--AD 385

Query: 403 HVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V +         +  +  AL  +    +   +  +   + + +  GD +V+  SN 
Sbjct: 386 RVLIYQPFNIKWSLTPIVQALGPNKASVFFG-IQAILDSLCAYVQGGDHIVLM-SNG 440


>gi|313158276|gb|EFR57678.1| UDP-N-acetylmuramate--L-alanine ligase [Alistipes sp. HGB5]
          Length = 460

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 127/382 (33%), Gaps = 49/382 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F+  A    A +VV    +    G      + V        +  +   L     ++A+ 
Sbjct: 63  EFLDPA----ATMVVYTPAVPQEHGEY---QYFVSHGFCVEKRSQMLGHLAEGKYVMAVA 115

Query: 115 GSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           G+ GKTTT  ++      +     A +G  + + G  L L          +         
Sbjct: 116 GTHGKTTTSTLVAWLNRGVTGGGSAFLGGISKNFGGNLVLG---AGARLAV------EAD 166

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E       + P +AVIT+    HL  +   E +  A ++    +   G + +       +
Sbjct: 167 EFDRSFLRLYPDVAVITSADADHLDIYGTHEAVKEAFSQFVRQIRPGGFLII---KEGVD 223

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSME-VVHHGIGYH 291
           ++          T+Y +      DF  R  +      +  ++   G  +E       G+ 
Sbjct: 224 IVLDNPQI----TVYRYSYDVPCDFYARNVQLLEGGHYRYDIVTPGGVVEGCTLGIPGWV 279

Query: 292 MAQNMLMTLGI------VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +N +               T D +   +AL+ F   + R + Y     Q    +  + 
Sbjct: 280 NIENSVAAAASVWCAAQAEGTTLDAERLREALASFAGVKRRFEFYVNTPKQ----VYMDD 335

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-------- 397
           Y  +P  + A ++ + ++ P   GRRI  L     +   ++  + + AE LS        
Sbjct: 336 YAHHPRELAATLTSVRKMFP---GRRITALFQ-PHLYTRTRDLYREFAEALSHADDVVLL 391

Query: 398 -LYNISHVWLSGFHVLALKDAL 418
            +Y      + G     +   +
Sbjct: 392 PIYPAREEPIEGVTSEIIAQGV 413


>gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
 gi|118595672|sp|Q12EL7|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
          Length = 587

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 124/369 (33%), Gaps = 48/369 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFG 163
            +  ++AITG+ GKTT   ++   +    KT A  G+    +   L+ A +  D      
Sbjct: 205 YRPVVLAITGTNGKTTVTSLVGQLVQRAGKTVAVAGNIGPTLLDTLS-AHLDADTLPQVW 263

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L +         P  AV+  +   HL     ++   +AKA IF        +
Sbjct: 264 VLELSSFQLAD----AQDFEPTAAVVLNVTQDHLDWHGDMDAYVAAKARIFGRST---FM 316

Query: 224 FLNYDDSFFELL-----KAKSHALGIKTIYSFGKSK---NADF---------------QL 260
            LN DD     +     K +     ++   +FG  +     D+               Q 
Sbjct: 317 LLNRDDPRVMEMLPTPVKVRLRPPQVRPHSTFGAGEPQRPGDYGIETVNGMAWLVRAAQA 376

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +  +   +E+ +Q           G H A N L  LG+       +   +      
Sbjct: 377 DETIKRRKGEEVELHIQRLMPLDALRIRGRHNATNALAALGLAVAAGCSLAPMLHG---L 433

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G   R             D+S   N  +  A     +      E + + +LG   +
Sbjct: 434 REYRGEPHRVESIAVVNDVEYFDDSKGTNVGATAA-----ALAGLGAERKLVVILGGEGK 488

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQS 439
             + S      LAE +S ++   V L G     ++ AL  S + +  + +M        +
Sbjct: 489 GQDFSP-----LAEPVS-HHARAVVLIGKDAPLIRSALQASQVALLDAASMQEAVSLAAA 542

Query: 440 SLVDGDVVV 448
               GD V+
Sbjct: 543 QAHTGDAVL 551


>gi|160915064|ref|ZP_02077277.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
 gi|158432863|gb|EDP11152.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
          Length = 434

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 127/379 (33%), Gaps = 37/379 (9%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A +      VV         +  +        +          +L  + T +++ G+ GK
Sbjct: 53  AKENICENSVVIIGNAFDESNPEVKQAMSMPSVTTYWYHEFLGKLIEEYTSVSVAGTHGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  M++  +S +  T   IG              MP D  + I E       E +   
Sbjct: 113 TTTTGMVSHMMSLVAPTGYLIGDG---------TGEMPQDSKYFIVE-----SCEYKRHF 158

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP+ A++T I   H+  +  + +   A       ++K   I +  DD+    LK  +
Sbjct: 159 LAYRPNYAILTNIELDHVDYYKDLADYCDAFEAFANQVKKG--IVMFGDDANVRSLKVTT 216

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLM 298
             L       +G  ++ D +     Q       +V  Q           +G  +  N L 
Sbjct: 217 KHL------YYGLEEDNDVRAVNVIQNENGMSFDVIYQNTVFGSFKLPFVGKPLLWNSLG 270

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +  +         + L+ F   +   +R+    N G   +  + Y  +P +++  I 
Sbjct: 271 VIALGIMEGLSAQILQEGLASFPGVK---RRFTIEENHGNVYI--DDYAHHPTAVQYMIE 325

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                 P+   R+I  L        +   F    A+ L+L     V+L  F   A K+  
Sbjct: 326 AARTKYPN---RKIIALFKPDRYSRIYY-FMDRFAQALNL--ADEVFLCNFPENAAKE-- 377

Query: 419 PRSIHVHYSETMDGLFLFI 437
              I +   +  D +   +
Sbjct: 378 -EGIDITIQDLADKIEKAV 395


>gi|166031191|ref|ZP_02234020.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
 gi|166029038|gb|EDR47795.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 123/376 (32%), Gaps = 51/376 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   + + +     +G+  N   V    A +  +    + E
Sbjct: 114 KGDVLAITGTNGKTTTTTLLGEIMKAYQDDVFVVGNIGNPYTVA---ADLMTEHSIAVAE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I       RP+++ I    P HL+    +E   +AK  I     +     LN
Sbjct: 171 MSSFQLESI----VAFRPNVSAILNYTPDHLNRHHTMEAYIAAKENIARNQTEDDYCVLN 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWK-QCSEQSWMEVQLQGKSMEV 283
           Y++                 +  F      +    L   K        +EV    +    
Sbjct: 227 YEEPVMRKFAETLKC----HVLFFSSQHKLEKGIYLDNDKIIYKNPDEVEVCHVDE---- 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  +N++  + + ++    ++T  KA+  F   +G   R      +      +
Sbjct: 279 -LQILGTHNYENVMAAVCMAAVYGVPMETIRKAILAF---KGVAHRIEYVAEKNGVVYYN 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP +   AI  +         R   +LG     G    S + +         +  
Sbjct: 335 DSKGTNPDAAIKAIQAMR--------RPTILLGG----GYDKDSEYTEWINSFDG-KVKK 381

Query: 404 VWLSGFHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           + L G     +          H   Y +T +            GD V++    +S     
Sbjct: 382 LILMGATKEKIARD-CEKCDFHDYVYVDTFEEAMNLAVEMAEPGDAVLLSPACASWGMFP 440

Query: 453 ----NSCGFYRLINLL 464
                   F  ++N L
Sbjct: 441 NYEVRGDKFKEIVNSL 456


>gi|329667558|gb|AEB93506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii DPC 6026]
          Length = 460

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 128/390 (32%), Gaps = 50/390 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L IPV    +   ALN              + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVEKAEKLDIPVIT--EPEIALNVSEAPY--------VCVTGSNGKTTTVMLTQ 132

Query: 128 IA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 LS        +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 RIMDHNLSKNGGHAYAVGNIGVPISEVVEKATSK---DLLVVEMSSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +A I  I    HL      +    AK +I +  ++      N+D    + +  K    
Sbjct: 186 PKVAAIVDIYNNVHLDYHKTFDNYVEAKLKITQSQDQDDYFIANFDQ---KNILEKELDK 242

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + +F +  K AD+ +      S+     +++            G H  QN L+ + 
Sbjct: 243 TKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISD------IKIPGIHNQQNCLVAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I  ++ AD      ALS F    G   R +  +      + ++S + N  +   AI    
Sbjct: 297 ISKLMGADNSDIQYALSTFT---GATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFK 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +         IA        G L + F  D    L   ++  + L G     L DA  ++
Sbjct: 354 EPEV-----LIA--------GGLDRGFMFDSLVPLFKKHVKSIVLYGETKYLLADAARKA 400

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +    T+             GDV++ 
Sbjct: 401 GIKDIVIVNTLQEAVPRAYELSEAGDVILF 430


>gi|325571375|ref|ZP_08146875.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155851|gb|EGC68047.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 452

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 123/352 (34%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITG+ GKTTT  M+   L++  +    + S N       ++A+     D
Sbjct: 106 AYQISEAPIIGITGTNGKTTTTTMIANVLNAGMEKGQALLSGNIGFPAS-SVAQTAKPED 164

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I  L    RP IAVIT I  AH+       E   AK  + + +    
Sbjct: 165 RLVMELSSFQLMGIDTL----RPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTADD 220

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGK 279
            + +N++    E L AKS A     I  F   +     + L       E++ M  +    
Sbjct: 221 YLVINWNQPELEALSAKSKA----KIIPFSTKEKVAGAYMLDGMLYYKEEAIMAAE---- 272

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +     +   +AL  F        R +        
Sbjct: 273 ----ELGVPGAHNIENALAAIAVGKLCNMPNEAIKQALQTFTGVP---HRTQYVTTINQV 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+             ++ +L    + G            V +L 
Sbjct: 326 KFFNDSKATNILATEMALGGFDN-------EKLVLLAGGLDRGNSFDEL------VPALK 372

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     L  A   +    +  ++ ++       S    GD +++
Sbjct: 373 GLKAIVVFGETKEKLASAAQAAGVKTIEMTDNVETAVPVAFSLSAAGDTILL 424


>gi|197302584|ref|ZP_03167639.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
 gi|197298482|gb|EDY33027.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 128/381 (33%), Gaps = 50/381 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K  ++AITG+ GKTTT  +L   + +  +    +G+  N      ++A    +  
Sbjct: 109 AYEAGKGEVLAITGTNGKTTTTSLLGQIMKNYTENTYVVGNIGNPYT---SVALETTEDS 165

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I       RP ++ I  I P HL+    +E   +AK  I +   +  
Sbjct: 166 VIVAEMSSFQLETIETF----RPRVSAILNITPDHLNRHHTMEAYIAAKENIAKNQTEED 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T  LNY+D+          A     +  F        ++ +     +   + + L G+  
Sbjct: 222 TCVLNYEDAVTRQFGETLKA----KVLYFSSQ-----RILEEGIYLDGEKIVLSLNGEKT 272

Query: 282 EVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           E+      + +G H  +N +    + +     V+   K L  F   E    R      + 
Sbjct: 273 EICTVNELNILGTHNHENAMAAAAMAAAYGVPVEIIRKTLKEFQGVE---HRIEFVAEKD 329

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +    I  +++ +    G            G    S + +      
Sbjct: 330 GVVYYNDSKGTNPDAAIKGIQAMNRPTVLIGG------------GYDKDSAYDEWINAFD 377

Query: 398 LYNISHVWLSGFHVLALKDALPR-SIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KSS 452
              +  + L G     +     +   H    ++T +  F         GD V++    +S
Sbjct: 378 G-KVKKLVLIGATREKIAQTAEKLGFHEIVMADTFEEAFEKCVEYAEPGDAVLLSPACAS 436

Query: 453 ---------NSCGFYRLINLL 464
                        F  L+N L
Sbjct: 437 WGMFKNYEQRGDKFKELVNQL 457


>gi|154488894|ref|ZP_02029743.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
 gi|154083031|gb|EDN82076.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
          Length = 479

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 138/401 (34%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +      +IPV    +V  A      +      A  I ITG+ GKT+T EM +  L
Sbjct: 68  RTPFILEAQKRNIPVMS--EVELAWQLRVNSNTTGKPAQWIGITGTNGKTSTTEMTSEML 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++       +G+    IG  ++ A +    D    EL    L      T+ +    A IT
Sbjct: 126 TACGLAAPAVGN----IGKAVSHAAVDPANDVLCVELSSFQL----HFTYSLELDCAAIT 177

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            IA  HL    GIE  A+ KA++F  ++K   +  N DD     L   +          F
Sbjct: 178 NIADDHLDWHGGIENYAADKAKVFHNVKK--ALVYNADDERVTKLAFAAQTAPECRRIGF 235

Query: 251 GKSKNADFQL----------RKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLM 298
             ++  D Q+                      +V        +      +  H+  + L 
Sbjct: 236 TLAEPKDGQIGVKDGWIVDMSGIGGGEAGKPFQVAKVTDFTHLTEPDGTVYPHLLADALT 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAA 356
            L +V  L AD D A+ AL  F P   R +    A   + G    +D+S   N  + KA+
Sbjct: 296 ALALVLGLGADKDKALAALKQFTPGGHRIQTVAVAKTSDGGTIRFVDDSKATNAHAAKAS 355

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++  +        + +  +      G   +    D A  +         + G     + D
Sbjct: 356 LNSFAD-------KSVVWIAGGLAKGSRFEQLVADQAHTIKAA-----IIIGKDQQPMLD 403

Query: 417 ALPRS---IHVHYSETMDG------LFLFIQSSLVDGDVVV 448
           A   S   I +   + MD             +    GDVV+
Sbjct: 404 AFKASAPDIPMSVIDPMDNDTVMARAIDAAGTYAQSGDVVL 444


>gi|254372497|ref|ZP_04987986.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570224|gb|EDN35878.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 456

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  M    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMSSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G ++EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNNVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVK---RRLEVLSHQDNVTLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|326315568|ref|YP_004233240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372404|gb|ADX44673.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 672

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 125/386 (32%), Gaps = 56/386 (14%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL +    A       ++AITG+ GKTT   +  + +    ++ A  G+    +   
Sbjct: 274 ALAALRESHGYA-----PAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTLLD- 327

Query: 151 LTLAR-MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            TL R +  D      + EL    L           P  A +  I   HL     ++  A
Sbjct: 328 -TLGRHLDADTLPQAWVLELSSFQLDG----ATGFEPTAATVLNITQDHLDWHGDMQAYA 382

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADFQ 259
            AKA IF     +G + LN +D+    +     + K     ++   +FG     +  DF 
Sbjct: 383 RAKARIFGQ---SGLMVLNREDAAVMDMLPPPVRVKLQKPQLRAHVTFGADMPQRPGDFG 439

Query: 260 LRKW----------------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +                   K+    +  ++ +Q           G H A N L  L + 
Sbjct: 440 IETVNGMAWLVRAQESDETAKRTRSHAEEDLHIQRLMPADALRIRGRHNAVNALAALALA 499

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     + A        G   R             D+S   N  +  AA+  L   
Sbjct: 500 HAAGCPFAPMLYA---LREYRGEPHRVEPLGRVNEVEYFDDSKGTNVGATVAALGGLGA- 555

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
               + R + +LG   +  + S      LA  +S Y +    L G     ++ AL    +
Sbjct: 556 ----DRRVVVILGGDGKGQDFSP-----LAMPVSRY-VRAAVLIGRDAPQIRAALRDAGV 605

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            +  + T+             GD V+
Sbjct: 606 PLVDAPTLPEAVRLAAQRAHAGDAVL 631


>gi|86140625|ref|ZP_01059184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832567|gb|EAQ51016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
          Length = 444

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 105/278 (37%), Gaps = 21/278 (7%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+  +  ++++  AAR   KAT++ ITGS GKTTT  ++   L          G+  +  
Sbjct: 83  VEAGISVISEIEFAARYT-KATLVGITGSNGKTTTTMLMAHLLKQAGLKSVAAGNIGDSF 141

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
              + L     D DF   E+    L  I        PHIA++T I P HL  +    E  
Sbjct: 142 AKWVAL----DDQDFYALEISSFQLDGIVDFA----PHIAILTNITPDHLDRYEYKFENY 193

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264
             +K  I E   +   +  + DD       AK         +S  K   K A +   +  
Sbjct: 194 IKSKFRIAENQTEKDYLIYDADDPVITDWLAKHPVRSQCIPFSISKQLEKGAYYAQEEIN 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + + M +  +  +++      G H  +N +       +L+    T  ++L  F   E
Sbjct: 254 ILIDDTTMTMSTKNLTIK------GAHNTKNAMAAATAARLLSIRKATIRESLEGFQGVE 307

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
               R    L     + I++S   N  +   A+  +S 
Sbjct: 308 ---HRLEQVLKINHVSYINDSKATNVNATFYALDSMSA 342


>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
 gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
          Length = 456

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 144/384 (37%), Gaps = 33/384 (8%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+  +++   SL IP+       G   ++++ VA  L  K+ I+A+TG+ GKTTT  +LT
Sbjct: 69  VDRIVISPGISLDIPIVKAAQARGIDVVSEVEVAYELS-KSPIVAVTGTNGKTTTTTLLT 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L    K     G+  + +        MP D  F + EL    L  I+      RP  A
Sbjct: 128 KVLEGTGKPVRVGGNIGDSLSEVAY--SMPAD-GFLVAELSSYQLETIKHF----RPIGA 180

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++  I   HL+    +E   +AK  IFE    T  + LN DD     ++ +  +  I  I
Sbjct: 181 IMLNITADHLARHKTMENYIAAKERIFENQLSTDFMVLNIDDPIVADMEHRVLSH-ILKI 239

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  N  +  +     ++       +    +    H  G H  +N+L  + +  +L 
Sbjct: 240 SQHQVVPNGAYYDKGQCYVTKDGIATPVIGSDDI----HIPGSHNIENILTVIALTYVLG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +T  + +S FH  E R +R +        T  ++S   N  S+  A+    Q     
Sbjct: 296 VPAETIHRIISEFHGVEHRLERVKTI---DGITFYNDSKATNVDSVVKALESFDQ----- 347

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVH 425
               I + G   +M  L           L   +   V   G      + A   +    ++
Sbjct: 348 --SVILLAGGHDKMTPLEDFMQ------LVKDHTKAVIFMGEAADRFEAAAKEAGVQPIY 399

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
            + +M             GD+V++
Sbjct: 400 RASSMKDAVEQGYKLADQGDIVLL 423


>gi|115524118|ref|YP_781029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisA53]
 gi|115518065|gb|ABJ06049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisA53]
          Length = 482

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 122/382 (31%), Gaps = 47/382 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R   +A  +AITG+ GK+TT  ++   +          G+    I       + P +   
Sbjct: 121 RHAPEAPFVAITGTNGKSTTTALIAHLMRQAGYDTQMGGNIGTAILS----LQPPQNGRV 176

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G+   G 
Sbjct: 177 HVIEMSSYQID----LTPSLDPSVGIMLNVTEDHIDRHGSIENYAAVKERLVAGVLPQGC 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGK 279
             +  DD F   +  +    G   +    K   AD    +     + +  +  E+   G 
Sbjct: 233 AIIGVDDGFGRDMADRLERAGQPVLRVSVKGPLADGIIVEHETIVKVAGGARQEIARIGG 292

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
               +    G H AQN       V  L    +T  + L  F     R ++  R A NQG 
Sbjct: 293 ----IGSLRGLHNAQNAACAAAAVLALGVRGETLQQGLRSFPGLAHRMEQVGRQAGNQGA 348

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  +   A+S    I     G+     G +  + E               
Sbjct: 349 TLFVNDSKGTNADATAKALSSFGDIFWIAGGKPKT--GGIESLAEFFPR----------- 395

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV---KS 451
             I   +L G         L   +    SET+D                  VV++    +
Sbjct: 396 --IRKAYLIGAAAQEFAATLEGRVAYEISETLDVAVPHAARDAAASGLPEPVVLLSPACA 453

Query: 452 S---------NSCGFYRLINLL 464
           S             F  L+  L
Sbjct: 454 SFDQFRNFEIRGTHFRDLVTAL 475


>gi|320457842|dbj|BAJ68463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 493

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 112/304 (36%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 78  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 135

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 136 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   +    I  N  D+    L A++  A G + + 
Sbjct: 192 TNIADDHLDWHGGRENYAADKSKVFHNAKH--AIVYNAQDAKVSELAAEAQTAEGCRKVG 249

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 250 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGEPVRLAAITDFTHLAEPDGSLYPHLVADAL 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +      +  G    +D+S   N  + +A+
Sbjct: 310 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAVVEGGSVRFVDDSKATNGHAARAS 369

Query: 357 ISVL 360
           +S  
Sbjct: 370 LSSF 373


>gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 476

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 144/401 (35%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +       IPV+   +V  A      +AR    A  + ITG+ GKT+T EM +  L
Sbjct: 66  RTPFILEAQRRGIPVYS--EVELAWRLRVDSARTGRPAPWVGITGTNGKTSTTEMTSAML 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +       +G+    IG  ++ A +  D D    EL    L      T  +    A IT
Sbjct: 124 CADGLVAPAVGN----IGKAVSHAAVDPDNDALCVELSSFQL----HFTDSLALDCAAIT 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI-Y 248
            IA  HL    GIE  A+ K+++F  + +   +  N DD     L + +H A G + I +
Sbjct: 176 NIADDHLDWHGGIEAYAADKSKVFRNVRR--ALVFNADDRRVSALASAAHTAEGCRRIGF 233

Query: 249 SFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLM 298
           + G        +       +          + +   ++   H       +  H+  + + 
Sbjct: 234 TLGVPHPGQIGVDDGWIVDRSGVAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMT 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAA 356
            L +   +  D+D A+ AL  F P   R +    A   + G    ID+S   N  + +A+
Sbjct: 294 ALALALGMGVDLDKALAALKAFAPGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARAS 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +S  +        + +  +      G   +    D A  +         + G     + +
Sbjct: 354 LSSFA-------PKSVVWIAGGLAKGSRFEQLVADQAHTIKAA-----VIIGKDQKPMLE 401

Query: 417 ALPRS--------IHVHYSET-MDGLFLFIQSSLVDGDVVV 448
           A   S        I    S+T M        +    GDVV+
Sbjct: 402 AFAASAPGIPLTVIEPEPSDTVMARAVDAAGAYAGTGDVVL 442


>gi|309779050|ref|ZP_07673817.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922115|gb|EFP67745.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 855

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 133/397 (33%), Gaps = 54/397 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A++G+ GKTTT  ++T  L+S        G+   +I     
Sbjct: 455 EAIVSTMFADGDDGRIPVVAVSGTNGKTTTVRLITHLLASSGLRMGMTGTDGVYIQGQRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +  DVD  +FE   +  G +R      R  +AV+T +    HL  
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFE--TARGGLLREGLAFDRCDVAVVTNVGEGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              S +E++A  K+ I + +   G   LN  D     +          ++  F    +  
Sbjct: 573 NYISTVEDLAVLKSVIVQNVAPRGMAVLNAADPMVARMADGCPG----SVTFFAHDPSLP 628

Query: 258 FQLRKWKQCSEQSWME----VQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              R   Q     +++    V  +G          + +  +G      +N + ++     
Sbjct: 629 TMARHRAQGKRVVFVDGPEIVVAEGANETRIALADIPLTRNGTIGFQVENAMSSIAAAWA 688

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D     + L+ F              +    TLI + Y  NP +++A  + ++ +  
Sbjct: 689 LGIDWTVIRRGLATFVNDAATAPGRFNLFDYKGATLIAD-YGHNPDAIQALCNAVATMPA 747

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALK 415
               RR+ V+      G+          ++L       V L           G  +  L+
Sbjct: 748 Q---RRMVVISG---AGDRRDEDIRKQTQILGGV-FDDVVLYEDQCQRGRADGEVLALLR 800

Query: 416 DALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           + L  +      E + G           L  GD+ ++
Sbjct: 801 EGLQGASRTSRVEEIRGEFLAIDTALGRLQPGDLCLI 837


>gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 260

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 26/239 (10%)

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +  ++   S       + ++G    A    ++ K        +VQ+Q K  E+
Sbjct: 8   VINIDDKYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEI 63

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +   L   + +  +A         +G+       + F+  ID
Sbjct: 64  SLKIPGLFSVYNALAAITVADFLGIPLRSVREA---LSHVTVKGRFEPVETGRDFYVFID 120

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  ++  +  L +      GR+I V G     G+  +S    + EV   Y    
Sbjct: 121 --YAHTPDGIRNIMEALKEYEA---GRKILVFGA---GGDRDKSKRPLMGEVAGKYADFC 172

Query: 404 VWLSG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S           +  +++ + + +      E       +  S+    DV+++  K 
Sbjct: 173 ILTSDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 231


>gi|18311195|ref|NP_563129.1| cyanophycin synthetase [Clostridium perfringens str. 13]
 gi|18145878|dbj|BAB81919.1| cyanophycin synthetase [Clostridium perfringens str. 13]
          Length = 874

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 132/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------IGSYNNH--IGVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C       IG+   H         AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     K  +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKLGNPIVF 649

Query: 272 ME-----VQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGINVILD--YAHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|307731024|ref|YP_003908248.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
 gi|307585559|gb|ADN58957.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
          Length = 464

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 130/372 (34%), Gaps = 28/372 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   + + G +  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRIGRVVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +   E +  +        +  FG     + Q  +     ++ +       +   V   
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWETQPAEDGVPVDERFAVYHNAERVGVVEWQ 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+ +
Sbjct: 279 VQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVK---RRMEVRGSVDGVTVYDD-F 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P +++  ++ L         R +AVL    E    +    +  A++  SL +   V+
Sbjct: 335 AHHPTAIETTVAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPASLADADLVF 390

Query: 406 LSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P        + +D L   +  +   GD V+V  SN  GF 
Sbjct: 391 GYGAPSGRDALGWNLGEALAPLGNKAQAFDNLDALVKAVVHAARPGDQVLVM-SNG-GFG 448

Query: 459 RLINLLLEEFPA 470
            +   LL+   A
Sbjct: 449 GVHQKLLDALSA 460


>gi|217979587|ref|YP_002363734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Methylocella
           silvestris BL2]
 gi|217504963|gb|ACK52372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocella
           silvestris BL2]
          Length = 461

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 127/389 (32%), Gaps = 59/389 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R+   A +IAITG+ GK+TT  ++    +++       G+    IG P+     P     
Sbjct: 109 RIAPDAPLIAITGTNGKSTTTALIAHLFATLGFDVQIGGN----IGTPILALEPPSSERV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E     +     L   + P + V+  + P HL     +E  A+ KA +   +     
Sbjct: 165 HVVECSSYQID----LAPSLDPTVGVLLNVTPDHLDRHGTMENYAAIKARL---VSAADH 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--- 279
             +  DD+F   +  K  A G   I   G S     +              +  +G    
Sbjct: 218 AVIGVDDAFCAAIAKKLRAEGHDVI---GVSAAGMLEGDGVVFEGGA----LYWRGGRRL 270

Query: 280 ----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                +  V    G H  QN   ++ ++  +  D     K L  F    G   R      
Sbjct: 271 DLIADLSGVGSLRGAHNGQNAAASVAVLHAIGLDGAGLAKGLRSF---AGLAHRMEEVGK 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G   L+++S   N  + + A+     I          +LG   + G + +S      ++
Sbjct: 328 YGKALLVNDSKATNADAAEKALLSFDNIFW--------ILGGRAKQGGI-ESLKPLFGKI 378

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ----SSLVDGDVVVV-- 449
                    +L G         +  +  V + +T++            S     VV++  
Sbjct: 379 AKG------YLIGEASHDFAKTIGDAFPVAFCQTLENALPLAARDAIESARAEPVVLLSP 432

Query: 450 -KSS---------NSCGFYRLINLLLEEF 468
             +S             F  +   L++ +
Sbjct: 433 ACASFDQFPDFEKRGDRFCEIARALIKAY 461


>gi|213691748|ref|YP_002322334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254766039|sp|B7GQ76|MURD_BIFLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213523209|gb|ACJ51956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 481

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 112/304 (36%), Gaps = 22/304 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  V       IPV    +V  A        R  + A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFVLEAQRRGIPVMS--EVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQL----HFTDSLALDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIY 248
           T IA  HL    G E  A+ K+++F   +    I  N  D+    L A++  A G + + 
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFHNAKH--AIVYNAQDAKVSELAAEAQTAEGCRKVG 237

Query: 249 SFGKSKNA-----------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              ++  A           D          E   +        +      +  H+  + L
Sbjct: 238 FTLEAPQAGQIGIEDGWIVDRSGVAGGAVGEPVRLAAITDFTHLAEPDGSLYPHLVADAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD DTA+KAL+ F P   R +      +  G    +D+S   N  + +A+
Sbjct: 298 TALALVLGLGADRDTALKALTSFKPGGHRIETVAEAVVEGGSVRFVDDSKATNGHAARAS 357

Query: 357 ISVL 360
           +S  
Sbjct: 358 LSSF 361


>gi|323340616|ref|ZP_08080868.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
 gi|323091739|gb|EFZ34359.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
          Length = 456

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 112/332 (33%), Gaps = 42/332 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+ + L+  ++        N  I     +A+   + D  + EL    L  I  L    RP
Sbjct: 128 MIALMLNQNREEGKAYTCGNIGISAAK-VAQEVGEKDVMVTELSSFQLMGIEKL----RP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AH       E    AK  I +  ++     +N+D   +  L   + A   
Sbjct: 183 HIAVLTNIYEAHTDYHGSRENYVKAKMRIVKNQKEDDYFVVNWDSEEWRNLSKLTKA--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEVV--HHGIGYHMAQNMLMT 299
             I  F +               E ++++   +  +G+ +  V      G H  +N L  
Sbjct: 240 -KIVPFSRQDT----------TEEGAYVKNGVIFFRGEEIMHVDEIKVPGSHNVENALAA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  I     +   + L  F    G   R +           ++S   N  + + A+S 
Sbjct: 289 ISVAKIEGQSNENIAEVLRTFS---GVRHRTQYVTTFNGRKFYNDSKATNMEATEKALSG 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-- 417
                       + + G +       +     L   L   ++  + + G     L++A  
Sbjct: 346 FEN-------PVVLLCGGLDRGFTFER-----LVPYLKK-HVKAMVVFGQTADLLEEAGK 392

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L     + +++              +GD+V++
Sbjct: 393 LAGIGRIKHAKDSSAAVSAAYEMSSEGDIVLL 424


>gi|322379099|ref|ZP_08053501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
 gi|321148471|gb|EFX42969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
          Length = 446

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 135/464 (29%), Gaps = 100/464 (21%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S D+R +                  F+   +Q                    +P  
Sbjct: 13  FTHLSDDTRELDQDTLLVQTPTNT----RFVQQYLQ-----------------EHRVPCI 51

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              ++    N         +   II ITG+ GKTTT  ++   L  +  + A +G+    
Sbjct: 52  HAKELKKYFN---------TDVRIIGITGTNGKTTTASLIYSLLLDLGYSCALLGTRGFF 102

Query: 147 IGVPL---------TLARMPVDVDFG--------IFELGMSHLGEIRFLTHLVRPHIAVI 189
                         +L  +  +++          + E+    + + R L   +     VI
Sbjct: 103 FNDSCLKQKGLTTPSLLEVYANIEQATNRGAHYFVMEVSSHAINQERIL--GLDFSAKVI 160

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL     +EE    K      L       +N DD+F             K  Y 
Sbjct: 161 TNITSDHLDYHGNLEEYRRVKNAF---LSDESLKIINRDDAFVRF--------NPKNAYG 209

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVH---HGIGYHMAQNMLMTLG 301
           +         +  +      + +       + Q    E        +G H   N+L  + 
Sbjct: 210 YAIEHKTHLSVNAYSLQGLSAHICFTEKPGRYQNSEFEEGLLYSPLVGRHNLYNLLAGIL 269

Query: 302 IVSILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            V +LT   + T    +  F   +GR +            L+   +       +   +  
Sbjct: 270 CVKLLTKKSLKTLCDLIPHFLGVKGRMEVVH------EQPLVIVDFAHTADGFEQIFNSF 323

Query: 361 SQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SGFHVLA 413
                    R+I A+ G     G   +S    +  +   Y  S V++          +  
Sbjct: 324 KT-------RKIKALFGA---GGNRDKSKRPLMGAIACKY-ASKVYITSDNPRYEEPMAI 372

Query: 414 LKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++D L       R   +   +    + L +Q  L   +++++  
Sbjct: 373 MQDILVGIAVEKRDKVILEIDRYKAICLALQE-LKSDEILLILG 415


>gi|331002502|ref|ZP_08326020.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410318|gb|EGG89752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 448

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 112/353 (31%), Gaps = 36/353 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               SK  +IAITG+ GKTTT  ++   +S   +    +G+          +A    +  
Sbjct: 99  GYKYSKGGLIAITGTNGKTTTTSLVGEIMSDFFEKSFTVGNIGIPYTD---IADKTDENS 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L  I       +P I+ I  I P HL+    +E     K +I +  ++  
Sbjct: 156 VTVLETSSFQLETI----IDFKPKISAILNITPDHLNRHHTMENYIKVKEDISKNQDENN 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRK-WKQCSEQSWMEVQLQG 278
              LNY+D           A     +  F      D  F L       +E   +   L  
Sbjct: 212 FCILNYEDVILREFAKNVKA----KVVFFSSKTKLDKGFYLDNDIIVKAENGKVSKILD- 266

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  + +G H  +N++  + I       ++  +K+   FH  E    R         
Sbjct: 267 ---TNKLNILGRHNYENVMAAIAIAESYGVPMENIVKSCYDFHAVE---HRIEFVKEVNG 320

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP    AAI  +  +          ++    + G     +          
Sbjct: 321 VKYYNDSKGTNPD---AAIQAVLAMPSFTY-----IIAGGYDKGSEYDEWIESFG----- 367

Query: 399 YNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + L G     + D   R     +    +M+            G+ V++
Sbjct: 368 GKVKKLILMGATAKNIADCANRHGFKDIDMVNSMEEAVNICAREAKSGEYVLL 420


>gi|225175499|ref|ZP_03729493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168828|gb|EEG77628.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 454

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 124/349 (35%), Gaps = 42/349 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++AITG+ GKTTT  +      +  K  A  G+    +     +A      +  + EL 
Sbjct: 110 PMVAITGTNGKTTTTALTGEIFQAAGKKTAVAGNIGLPLSA---VAVEDTKYEAVVAELS 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T   RP I+ I  + P H+     +E    AK +IF   + +    LN D
Sbjct: 167 SFQL----EATIDFRPQISAILNLTPDHMDRHKTMEAYVEAKEKIFANQKASDVTVLNAD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---- 284
           D     L+ +        +Y F + +  +      +    ++   V   G++ E V    
Sbjct: 223 DPRTYALRGRPRC----RVYLFSRRRQVE------RGAFVRNGHVVVRDGENEETVCGVD 272

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L    +  +    V+   K L  F    G   R       G  T I+
Sbjct: 273 EIRIPGAHNLENALAAALLAWLGGVAVEVIAKTLKNF---PGVSHRLEHVREFGGVTYIN 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +   A+   +         ++ + G   + G+ S       A  +   +  +
Sbjct: 330 DSKGTNSDAAIKALEAFAA-------PKLLIAGGYDKGGDFS-----SFAAAIKK-HARY 376

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLVDGDVVVV 449
           V L G     L  AL   +  H   T D L   ++    +   G+VV++
Sbjct: 377 VVLLGEVAGRLAQAL-DEVDYHAYSTADSLEDAVKIASDTAQSGEVVLL 424


>gi|296134862|ref|YP_003642104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
 gi|295794984|gb|ADG29774.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
          Length = 514

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 124/431 (28%), Gaps = 74/431 (17%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             HA +  A         V   G L +  + +D +                  I+AITG+
Sbjct: 78  APHAAEFAALTQAAAERGVPMAGELHLFQWALDALRAERGYA---------PKIVAITGT 128

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGMSHLGE 174
            GKTT   +  + L     + A  G+ +  +   L  AR+  D      + EL    L  
Sbjct: 129 NGKTTVTRLTGLMLERAGWSVAVAGNISPSMLDVLQ-ARLDADDLPAAWVLELSSFQLHG 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +           A +  I   HL     +   A+ KA IF      G + LN DD     
Sbjct: 188 MEGFAA----DAATVLNITQDHLDWHGDMTAYAADKANIFGNQSAQGVMVLNRDDPQVLA 243

Query: 235 LKAKSHALGIKTIYSFGKSK-------------NADFQLRKWKQCSE------------- 268
           ++        + +  FG S                D+  R   +                
Sbjct: 244 MQ-----RPGRKLRRFGLSAPQQPGDWGVVREGGIDWLARALPEEDSPRNRRGAAISPQG 298

Query: 269 --------QSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +  E  LQ + +         G H   N L  L +   + A +   + A  
Sbjct: 299 AGQGLGRPGALPEAGLQMQRLMPAEALRIQGAHNVANALAALALGDAVGAPLAPMLHA-- 356

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                 G   R +          ID+S   N  +  AA+          E   + + G  
Sbjct: 357 -LREYRGEPHRMQTVAVIDGVRWIDDSKGTNVGATVAAL-------AGMETPVVLIAGGD 408

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  + S               +    L G    A+   L       ++++++       
Sbjct: 409 GKGQDFSPL-------RAQAARLRAAVLIGRDAQAIAAELQGLAPTEFTQSLEQAVQLAA 461

Query: 439 SSLVDGDVVVV 449
           +    GD  ++
Sbjct: 462 TLAKTGDAALL 472


>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS195]
 gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS195]
 gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS678]
          Length = 439

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 153/448 (34%), Gaps = 59/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-----EAF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  +    +  + +DSR   P       +F    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVRYLCGKGITPLVMDSRRQPPGAETLATSFPDVKLISGGFDC-RYLVQATQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                +   T  V +   + I V G  DV   L    +A R   K  +I ITGS GK+T 
Sbjct: 71  IISPGIATYTPEVRAAVDMGIEVIG--DV--ELFAREIADR---KPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++           A  G+          L  +  + D  + EL    L      TH +
Sbjct: 124 TTLVGEMAREAGIAVAVGGNIGVP-----ALDLLHENADLFVLELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  +A    I+  H+  +S I     AK  ++   +++  +  N DD      +  +   
Sbjct: 175 KCVVATCLNISEDHMDRYSDIAAYREAKLRLY---KQSRAVLFNRDDKLTVPPEPMNQN- 230

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 SFG  +  AD       +    S   + +           IG H   N+L  + 
Sbjct: 231 ------SFGLAAPEADEWGISDSKIYHGSSEIMPI------TEVSLIGSHNHANLLAAMA 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V ++  D     K    F    G   R      +   T +++S   N  +  AA+  LS
Sbjct: 279 LVDVVGVDKQVMAKVARSFT---GLSHRCEVVGIKNGVTYVNDSKATNVGATVAALDGLS 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G     G+   +    L   ++L  ++H+   G     +      +
Sbjct: 336 D----HLGDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDGA 384

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + V   ETM             GD+V++
Sbjct: 385 VRV---ETMAAAVAKAAELATSGDIVLL 409


>gi|294627149|ref|ZP_06705737.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598582|gb|EFF42731.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 452

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 128/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A R+      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAERVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMG---CWTPVERFGFEASLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              N    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGNARDITVYDD-FAHHPTAIA---TTLQGLRAKVGAARVLV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL +   V           DA P    V    H +  +D L   +    
Sbjct: 374 QAL------APSLQDADAVVFL-HRPELAWDAAPIIAQVRGDAHVAHDVDALLQTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 RPGDHVVFM-SNG 438


>gi|194364791|ref|YP_002027401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347595|gb|ACF50718.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stenotrophomonas
           maltophilia R551-3]
          Length = 469

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 114/339 (33%), Gaps = 34/339 (10%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L +       +G+    +   L     P   ++   EL     GE+       RP
Sbjct: 132 LVAHLLRAAGHRTGLVGNIGLPLLEVLDPQPAP---EYWAVELSSYQTGEVAR--SGARP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+  + P HL      +     K ++           LN  D     L     +L  
Sbjct: 187 QVAVVLNLFPEHLDWHGSEQRYIEDKLQLVTEAAPR-IAVLNAADPHLAAL-----SLPD 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  F + +    +        EQ+  +               G H   N+   L  + 
Sbjct: 241 SKVIWFNQPQGWHMRG-DIVHRGEQAVFD--------TRNTPLPGRHNRGNLCAVLAALE 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      A+  F P   R +R   A      T +++S +  P +  AA+   +   
Sbjct: 292 ALGLDAVALAPAVQDFRPLPNRLQRIGAAE---GLTYVNDSISTTPHASLAALECFA--- 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G+RIA+L    + G     F   +A  +    I  +  +G  + A+   L  +   
Sbjct: 346 ----GQRIALLVGGHDRGLDWTDFMQHMAHDVPPVEIVTMGSNGPRIHAMLQPLADAGRF 401

Query: 425 --HYSETMDGLFLFIQSSL-VDGDVVVVK-SSNSCGFYR 459
             H +  +       +++L  +G V+++   + S G YR
Sbjct: 402 GLHAAGDLPEAMALARAALGSEGGVILLSPGAPSFGAYR 440


>gi|91977862|ref|YP_570521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB5]
 gi|91684318|gb|ABE40620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB5]
          Length = 470

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 109/333 (32%), Gaps = 31/333 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    +  +AITG+ GK+TT  ++   +          G+    I         P     
Sbjct: 109 RHAPDSPFVAITGTNGKSTTTALIAHLMREAGYDTQMGGNIGTAILS----LEPPRSGRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT
Sbjct: 165 HVIEMSSYQID----LTPSLAPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
             +  DD F      +    G + +  S  +   +         +  +  +  E+   G 
Sbjct: 221 AIIGVDDGFGRDAADRLERAGKQVVRISVKQPLASGITADHETIRSSAGGASREIARLGG 280

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
               +    G H AQN          L    D   K L  F     R ++  R +  +G 
Sbjct: 281 ----IGSLRGLHNAQNAAAASAAALALGVSADALQKGLRSFPGLAHRMEQVGRQSSGEGA 336

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  +   A+S   +I     G+           G  S      LAE    
Sbjct: 337 TLFVNDSKGTNADATAKALSSFGEIFWIAGGK-------PKTGGIES------LAEYFPR 383

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             I   +L G         L   +    SET+D
Sbjct: 384 --IRKAYLIGEAAEEFAATLEGKVAYEISETLD 414


>gi|167586076|ref|ZP_02378464.1| UDP-N-acetylmuramate [Burkholderia ubonensis Bu]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 129/372 (34%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVSN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             ++  E + A+        +  FG                 E     V  +G+ + EV 
Sbjct: 221 GREAALERVLARG---CWSEVERFGVDGGWQALAAEDGVPVDE--RFAVYWRGERLGEVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGSVNGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  +++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRARIGQQNARILAVL----EPRSNTMKLGVMKSQLPASLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P     H  + +  L   + +    GD V+V  SN  G
Sbjct: 388 VFGYGAPAGRDALGWNLGEALAPLGGKAHAFDDLHQLVTAVVAVARPGDHVLVM-SNG-G 445

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 446 FGGVHQKLLDAL 457


>gi|229918549|ref|YP_002887195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sp. AT1b]
 gi|229469978|gb|ACQ71750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Exiguobacterium sp.
           AT1b]
          Length = 445

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 113/352 (32%), Gaps = 44/352 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A L ++A  +AITGS GKTTT  ++   L   ++     G+        + +A      D
Sbjct: 102 AYLATEAEFVAITGSNGKTTTTTLVYELLKGGERPVHLAGNIGFP---AIEVASQAKAGD 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P  A +  ++ AHL      +  A AK  +F  +    
Sbjct: 159 LIVIELSSFQLMGIE----SFHPRSAALLNLSEAHLDYHGDFDAYADAKGNLFRRMTNAD 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I +   D             G     +F   +     +  W          V ++G+ +
Sbjct: 215 QIVVKVTDPEVMK-----RVPGEIEPTTFSFDRGDASVVDGW----------VTVRGEKI 259

Query: 282 EVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             V      G H  +N+L  L +V               V     G   R     +    
Sbjct: 260 MPVNELALGGAHNVENVLAALLLVEPFAIPRTHI---ERVLRNFGGVAHRTESLGDVLGR 316

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SL 398
            + ++S   N  + +AA+              I  L    E G        DL+ +  +L
Sbjct: 317 AVYNDSKATNNVAAEAALRGFDA--------PIVWLCGGLERG-------ADLSSLAPAL 361

Query: 399 YNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  V   G      K+    R I     ET+             GDV+++
Sbjct: 362 SNVKAVVAYGETKERFKELGESRQIPSFTVETLADAVPLAFEQSETGDVILL 413


>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
 gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
          Length = 449

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 153/431 (35%), Gaps = 57/431 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQKGAGLVVVNTDMVASIGS 80
           +  + +DSR   P     A++ P  +    G D  +++ A  +      +  D      +
Sbjct: 28  ITPLVMDSREQPPGAKQLALEFPEVNLITGGFDCRYLVQA-SQIVISPGIALDTPEIRAA 86

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + + +  + DV     +L   A   S + +I ITGS GK+T   ++     +    YA  
Sbjct: 87  IDMDIEVIGDV-----ELFARAVKNSSSCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVG 141

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+    +   L L + P+D    I EL    L      TH +    A    I+  H+  +
Sbjct: 142 GNIGIPV---LDLLQSPID--LYILELSSFQL----ETTHSLNCIAATCLNISEDHMDRY 192

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADF 258
             +E    AK  +++    +     N +DS  +               SFG +   N ++
Sbjct: 193 RDLEAYRQAKLSLYDQ---SKRALFNREDSLTQPNDPMDQN-------SFGLTSPVNDEW 242

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            ++  K     S + V L   ++      +G H   N++  + +      + ++ I+   
Sbjct: 243 GVKDGKIVHGASEI-VSLDDVAI------VGSHNHANLIAAMALAYHAGIEKESMIEVAK 295

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    G   R     N    + +++S   N  +  AA+  LS+      G  I + G  
Sbjct: 296 HFT---GLAHRCELVANIDAVSYVNDSKATNVGATVAALEGLSE----HLGDIILIAGGD 348

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  +              L  ++H+   G     +      S  V   ++M        
Sbjct: 349 GKGADFGPLE-------AVLDKVTHLITLGKDGDKIAALKDNSKRV---DSMADAVKQAA 398

Query: 439 SSLVDGDVVVV 449
                GD+V++
Sbjct: 399 GLATAGDIVLL 409


>gi|255021544|ref|ZP_05293587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968932|gb|EET26451.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 460

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 127/370 (34%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           I+A+ G+ GKTTT  ML   L          IG    +      L   P    F + E  
Sbjct: 105 ILAVAGTHGKTTTTSMLAWILEYAGLAPGFLIGGAPRNFPESGRLGSGP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                        V  RP   ++  +   H   +  +  I +    +   +   G +   
Sbjct: 161 EYDTAFFDKRAKFVHYRPRTVILNHLEYDHADIYPDLAAIETQFHYLLRTVPANGQVLYR 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
                 E + A+           F    + D +L         S  ++   G+++ +V  
Sbjct: 221 SGIPALERVLARG---CWSEAIPFADGADWDLKLED----PAGSAWQILEDGRAVGQVEW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G   A+N L  +     +   V ++  AL+ F    G  +R           + D+ 
Sbjct: 274 DLYGRFNAENGLAAILAARHVGVPVASSCAALAHF---AGVRRRLEERGRVADIRVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNIS 402
           +  +P ++ A +  L    PH  GR +AVL    E    +     H   LAE L+  +  
Sbjct: 330 FAHHPTAIAATLRALRARQPH--GRLLAVL----EPRSNTMRLGVHRGQLAESLAAADAV 383

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            V+        +  AL +   V     +D L   + +S   GD ++V  SN  GF  +  
Sbjct: 384 FVYAPPDLSWDVAAALGQPERV--FSDLDMLVDAVATSARPGDHILVM-SNG-GFGGIHE 439

Query: 463 LLLEEFPAIQ 472
            LL    A Q
Sbjct: 440 RLLRALEARQ 449


>gi|183220592|ref|YP_001838588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910700|ref|YP_001962255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775376|gb|ABZ93677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779014|gb|ABZ97312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 463

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 125/350 (35%), Gaps = 50/350 (14%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             AR+  K  II ITG+ GK+TT  +    L          G+    IGVP T   +  +
Sbjct: 103 ALARIFYKGPIIGITGTDGKSTTTALTYHLLQKKYPNAKMGGN----IGVPFTSFCL-EN 157

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +D+ + EL    L +    +  ++   + I  +A  HL     +E  A AK +I    +K
Sbjct: 158 LDYVVLELSSYQLDD----SPNLKLTASAILNLASDHLERHKTMESYALAKWKIQNLEDK 213

Query: 220 TGTIFLN----YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               F+N        F +   +  H++G    Y      N    +   K   + +     
Sbjct: 214 DHQCFVNPIFFSYTPFRKPNVSNLHSIGDNETYFVSLHPNL---IHTPKHTYDATRF--- 267

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRC 332
                        G H   N+   + +  +   D +   K L  F     R +       
Sbjct: 268 ----------PLTGKHNLMNLCFAIALAEVAGLDPEQIQKQLETFQGLPHRFQSIDPKNL 317

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +        I++S + N  SM + IS   +  P        +LG + +           +
Sbjct: 318 SPQYQSIRFINDSKSTNLHSMLSGISGFQKGDPMY-----LILGGIPK--------EEPI 364

Query: 393 AEVLSLYNISH--VWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQ 438
           A  ++ +      +++ G +   +  KD     + V + +T++ LF  ++
Sbjct: 365 APFINRWKELECLLYVFG-NAKEIWQKDLDQTGLPVTFFDTLNTLFSELK 413


>gi|55977152|gb|AAV68370.1| unknown [Herminiimonas arsenicoxydans]
          Length = 414

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 135/398 (33%), Gaps = 56/398 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A+ G+ GKTTT  ++   L + K       +   +I     
Sbjct: 15  EAIVSTMFAEGDDGRIPVVAVAGTNGKTTTVRLIAHILQANKHRVGMTTTDGVYIENQRI 74

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          M  DVD  +FE   +  G +R      R ++AV+T I    HL  
Sbjct: 75  DTGDCSGPRSARNVLMHPDVDAAVFE--TARGGVLREGLGFDRCNVAVVTNIGVGDHLGL 132

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + +   GT  LN  D     + A        ++  F K  N  
Sbjct: 133 NFISTVEDLAVVKRVIVQNVAPNGTAVLNAADPMVANMAASCPG----SVTFFAKDGNHA 188

Query: 256 --ADFQLRKWK--------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             A  + +  +          + +   E ++    + + H+G+     +N +  +G    
Sbjct: 189 VLATHRAKGHRVVFLDGTSIVASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWS 248

Query: 306 LTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L    D  +  L  F         R+    + G   + D  Y  NP +++A    +  + 
Sbjct: 249 LNLSWDIVLNGLRTFENSAATTPGRFNLFTHHGATVIAD--YGHNPDAIEALTHAVEAMP 306

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                RR+ V+    +  +       ++           V L           G  +  L
Sbjct: 307 AK---RRMVVISGAGDRRDDDLRRQTEILGDA----FDDVILYEDQCQRGRADGEVLALL 359

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L ++      + + G         +SL  GD+ ++
Sbjct: 360 RQGLTKAKRAKSIKEIHGEFLAIDTALASLQAGDLCLI 397


>gi|296160493|ref|ZP_06843309.1| UDP-N-acetylmuramate [Burkholderia sp. Ch1-1]
 gi|295889242|gb|EFG69044.1| UDP-N-acetylmuramate [Burkholderia sp. Ch1-1]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 126/374 (33%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPGIGRIVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E +  +        +  FG                 E     V    + + VV 
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWETLPAEDGVPVDE--RFAVYHNSERVGVVE 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 277 WQVQGEHNRMNALAAIAAARHVGVPPAQAAQSLASFRNVK---RRMEVRGSVDGVTVYDD 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P ++   ++ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 334 -FAHHPTAIDTTLAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 388

Query: 404 VWLSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P        + +D L   +  +   GD ++V  SN  G
Sbjct: 389 VFGYGAPTGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHAARPGDQILVM-SNG-G 446

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 447 FGGVHQKLLDALSA 460


>gi|266624107|ref|ZP_06117042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           hathewayi DSM 13479]
 gi|288864069|gb|EFC96367.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           hathewayi DSM 13479]
          Length = 355

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 97/279 (34%), Gaps = 30/279 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   +K  + AITG+ GKTTT  ++   LS+  K    +G+         + A    D  
Sbjct: 100 AYHDAKGKLAAITGTNGKTTTTSLVGEILSAYYKEVFVVGNIGTPYT---STALRTTDQS 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+    L  I       RP ++ I  I P HL+    ++   + K  I E   K  
Sbjct: 157 YTVAEISSFQLETITDF----RPDVSAILNITPDHLNRHKTMDCYINVKERIAENQTKED 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNYDD                 +  F   +     L     C +   +     G  M
Sbjct: 213 ACILNYDDPVLRRFGETIA----PRVIYFSSRE-----LLPEGICLDGDMIIRNHDGVRM 263

Query: 282 E----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           E       + +G H  +N++    I   L   ++T    +  F   E    R      + 
Sbjct: 264 EIINIHDMNLLGRHNHENVMAAAAIAMELGVPLETIQSVIRDFKAVE---HRIEFVAEKA 320

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                ++S   NP    AAI  ++ +     G  I + G
Sbjct: 321 GVKYYNDSKGTNPD---AAIQAVNAMP----GPTILIAG 352


>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
 gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
          Length = 453

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 118/342 (34%), Gaps = 32/342 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A +I ITGS GK+T   M+   LS+  K  A  G++         L  +   VDF + EL
Sbjct: 112 APVIGITGSNGKSTVTAMVASMLSACGKRVAVGGNFGTP-----ALDLLDQAVDFYVLEL 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L         ++  +A +  ++  HL     +     AK +IF+G      +  N 
Sbjct: 167 SSFQL----ERAQPLKLAVATVLNVSADHLDRHGSMPRYHHAKHKIFQG---AHAVVANR 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            DS    L       G + +    +  + D      +Q     ++               
Sbjct: 220 ADSLTLPLLD----GGTRQVLW--RPTDPDLDEFGVRQLDGVPYVCCGFTPLFPVSELKL 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N+L  L +   L   ++  I  L  F    G   R    L+    + I++S  
Sbjct: 274 KGMHNLNNVLAALALGVALDLPLERLIAGLKDFS---GLPHRCELVLDDAGVSWINDSKG 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  + +AA++ L           + + G + +  + +              +   V   
Sbjct: 331 TNVGATRAALAGLGAQE-----NVVLIAGGVGKGQDFTALLPE------VRNHCRRVLTL 379

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     ++ AL     V   ++++       +    GDVV++
Sbjct: 380 GESAREIELALGAHTPVQRVDSLEDAVAKAAALAQAGDVVLL 421


>gi|289662111|ref|ZP_06483692.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 452

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 131/373 (35%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV    A
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVS---A 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           R+    +F + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 149 RLGQGCEF-VVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMG---CWTPVERFGFDVSLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L     +  D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGVEIGQVQWPLVGRHNVLNGLAALAAAHAVGVDPATVMPALARFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              N    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGNAHGVTVYDD-FAHHPTAIA---TTLQGLRAKVGAARVVV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P    V    H +  +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGDAHVAHDVDALLQTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|260663593|ref|ZP_05864482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260551819|gb|EEX24934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 458

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 126/352 (35%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I++TGS GKTTT  ++   + ++   +    + N  +        +  D D
Sbjct: 106 GYQVFAGHLISVTGSNGKTTTTTLIEQMV-AMGNPHRVEYAGNIGVSFSKVAEELGPD-D 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RPHIAVIT I   HL      +    AK  I     K  
Sbjct: 164 TIVTEASSFQLLG----APTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ L  +++A    T+  F        +L K ++ + Q   ++  + + +
Sbjct: 220 YLVINWDKEEWQKLAKRTNA----TVVPFS-------RLAKSQEGAYQKGGDLYWRQERI 268

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG    +N L  +    +     +  ++ L+ F    G   R +  L+    
Sbjct: 269 MAAKDVVLIGPQNVENALAAIAAAKLSGVTNEAIVRVLTTFT---GVRHRLQYVLDYEGR 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + +  + + A+    Q         I + G +       +     L       
Sbjct: 326 RFYNDSKSTDIEATEVALQGFEQ-------PVILLAGGLDRGYTFER-----LVPYFRE- 372

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--VDGDVVVV 449
           ++  + + G     +K A  ++      E+ D +    ++      GDV+++
Sbjct: 373 HVKALIVFGESKDKMKAAGEQAGVKTIVESTDAVTAVPEAWRLSEPGDVILL 424


>gi|312871945|ref|ZP_07732027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092522|gb|EFQ50884.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 460

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 128/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F +  N AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLTKAHVVTFSEESNQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  ++ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKLMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|170695338|ref|ZP_02886484.1| UDP-N-acetylmuramate [Burkholderia graminis C4D1M]
 gi|170139738|gb|EDT07920.1| UDP-N-acetylmuramate [Burkholderia graminis C4D1M]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTTSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   + + G +  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRIGRVVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E +  +        +  FG                 E     V    + + VV 
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWETLPAEDGVPVDE--RFAVYHNAERVGVVE 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A K+L+ F   +   +R     +    T+ D+
Sbjct: 277 WQVQGEHNRMNALAAIAAARHVGVPPAQAAKSLASFRNVK---RRMEVRGSVDGVTVYDD 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  ++ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 334 -FAHHPTAIETTVAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 388

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P   +    + +D L   +  +   GD ++V  SN  G
Sbjct: 389 VFGYGAPSGRDALGWNLGEALAPLGANAQAFDNLDALVKAVVHAARPGDQILVM-SNG-G 446

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 447 FGGVHQKLLDALSA 460


>gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 146

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 10/148 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I   + F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI 147
           TTT  +L   LS        +G+    +
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKV 143


>gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D182038]
          Length = 370

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 110/354 (31%), Gaps = 39/354 (11%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMS 170
           ML     ++ +T A +G+  N +   +               L R  VD       + +S
Sbjct: 1   MLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVS 60

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G I+     +     V T ++  HL     +    +AK  +F   +      +N DD 
Sbjct: 61  SHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHK-IINADDD 119

Query: 231 FFELLKAK-SHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 ++   A+ +    +  K  N       K       + +         E+    +
Sbjct: 120 VGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLM 179

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L+ L  + +    +   + A     P  GR + +    N      +   Y  
Sbjct: 180 GAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF----NAPGKPTVVVDYAH 235

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++ A   L+    H  G+   V G   +  +  +     +AE L+      V ++ 
Sbjct: 236 TPDALEKA---LAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLA----DCVVVTD 288

Query: 409 FHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +         +   L  +  V                  + DVV++  K 
Sbjct: 289 DNPRSEEPQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 342


>gi|157960514|ref|YP_001500548.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
 gi|157845514|gb|ABV86013.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
          Length = 461

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 139/396 (35%), Gaps = 31/396 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +A  +  +  ++A+ G+ GKT+T  ML  
Sbjct: 68  LVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVAGTHGKTSTSSMLAW 127

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    + GV   L   P    F + E            +  V  +P 
Sbjct: 128 ILEDCGYEPGFLIGGVPQNFGVSARLGGSP----FFVVEADEYDSAFFDKRSKFVHYQPR 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             VI  +   H   F  ++ I      +   +   G I    D +  + +         +
Sbjct: 184 TLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWPADANSVQQVIDMGCWSEQE 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
             +  G S+   +         +    EV   G+S  ++    IG H  +N +M +    
Sbjct: 244 QYHLSGNSQG--WYAVNL--TEDGHKFEVFFDGESQGILDWQLIGQHNIENAVMAIAAAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    + AI AL+ F P +   +R           + D+ +  +P ++    + L+ + 
Sbjct: 300 HVGVKPEAAIAALTQFAPPK---RRMELLDTVNGIEVYDD-FAHHPTAIT---TSLNGMR 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF----HID-LAEVLSLYNISHVWLSGFHVLALKDAL- 418
                 +I V+     +   S +     H D LA  LSL + ++++ +G     +  A+ 
Sbjct: 353 ARVGSGKITVI-----LEPRSNTMKSGVHKDTLANSLSLASNAYLYQAGNIDWDISAAMS 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             SI V     +D +   + +     D ++V  SN 
Sbjct: 408 CASIPVEVLYDIDEIVERVSAQANSTDTIIVM-SNG 442


>gi|325911662|ref|ZP_08174069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|329921080|ref|ZP_08277603.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
 gi|325476428|gb|EGC79587.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|328934987|gb|EGG31476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
          Length = 460

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 128/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F +  N AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLTKAHVVTFSEESNQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|182677683|ref|YP_001831829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633566|gb|ACB94340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 462

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 114/335 (34%), Gaps = 43/335 (12%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + V+    A    +  + +  R R     K+  +AITG+ GK+TT  ++     +   
Sbjct: 82  PHWTVEKARAAGIEIIGDIELFCRERRLIAPKSPFVAITGTNGKSTTTALVAHLFQTFGY 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             A  G+    IG P+     P      + E     +     LT  + P + V+  I P 
Sbjct: 142 EVAIGGN----IGTPILALEPPSPTRVHVIECSSFQID----LTPTLDPWVGVLLNITPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK 254
           HL     +E  A+ KA +  G +K     +  DD     +           T  S    +
Sbjct: 194 HLDRHGTMENYAAIKARLVMGADK---AVICLDDEPCVAIAETLRQKHKPSTFVSISHPE 250

Query: 255 NADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             D  +       +     S +   L G     +    G H  QN    +  +     ++
Sbjct: 251 LRDGIILDGTTLVRHVDGGSVVIADLAG-----IASLRGRHNGQNAAAAVAALGAHGYNL 305

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   K L  F    G   R       G    +++S   N  + + A+     I     G+
Sbjct: 306 DLVRKGLESF---PGLPHRLEEVGRLGNVLFVNDSKATNADAAEKALLSFENIFWILGGK 362

Query: 371 RIA--------VLGDMCE---MGELSQSFHIDLAE 394
             A        + G + +   +GE S++F   + +
Sbjct: 363 PKAGGIDPLRPLFGKIAKGYLIGEASEAFAATIGD 397


>gi|119468521|ref|ZP_01611612.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alteromonadales bacterium TW-7]
 gi|119448029|gb|EAW29294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alteromonadales bacterium TW-7]
          Length = 455

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 145/408 (35%), Gaps = 31/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L   + ++A+ G+ GKTTT  ML  
Sbjct: 64  MVVIGNAMSRGNPCVEYVLDNSLPYTSGPEWLKHNLLQNSWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + GV   +   P    F + E            +  V   P 
Sbjct: 124 ILEYAGLKPGFLIGGIVQNFGVSAKVGETP----FFVIEADEYDTAFFDKRSKFVHYLPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   L  +G +     D   E +        ++
Sbjct: 180 TLILNNLEFDHADIFDDLNAIKKQFHHLMRTLPHSGKVIWPKQDKALEDVI-------LQ 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            ++S  ++   D+     K   + S   V L  +    V    IG H  +N +M +    
Sbjct: 233 GLWSESETLGIDWGYELIK--PDGSEFNVLLNNERQGTVNWGAIGEHNVKNAIMAIAAAR 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +   V  +I+AL+ F   +   +R     +     + D+ +  +P ++K  ++ L   +
Sbjct: 291 HVGIAVSHSIEALAEFISPK---RRMELKADINSIKVYDD-FAHHPTAIKTTLAGLR--A 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
             G  + IA+L       ++    H  LA +    ++  ++       +L +   ++  +
Sbjct: 345 KVGNEKIIAILEPRSNTMKMGVHQHTLLASLADADDV-LLFEPDNLGWSLNEQAQKAG-M 402

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEEF 468
               +   +   +  ++     +++  SN  GF     +L++ L ++F
Sbjct: 403 QCFNSTQAIINTVLKNVQPDQHILIM-SNG-GFNGLHQQLVDGLADKF 448


>gi|296133661|ref|YP_003640908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola sp. JR]
 gi|296032239|gb|ADG83007.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola potens
           JR]
          Length = 454

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 39/398 (9%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK-------LAVAARLRSKATIIAI 113
           V  GA   V        + S  +P      +  AL +       L +A R  +++ I+AI
Sbjct: 58  VAAGAYPEVTPDSFDMVVTSPGVP-LTEQPLRQALERKVPLLSELELAYRF-ARSPIVAI 115

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GKTTT  +      +  +     G+    +   +         D  + E+    L 
Sbjct: 116 TGTNGKTTTTTLTGEIFKAAGRRVLVGGNIGLPLVAEV---EKYAREDIIVAEVSSFQLE 172

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I       +P +++I    P HL      E    AKA IFE         LN+DD    
Sbjct: 173 CIHRF----KPKVSIILNFTPDHLDRHGTFENYILAKARIFENQGPEDFAVLNFDDPKVA 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               +  A  I         K    +  +      Q   +V    K + +     G H  
Sbjct: 229 ACAEQVKAQVIFFSRRHKLEKGVYVRQDRIIIDLGQGSKDV-CSVKDIFIR----GNHNL 283

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L      + L  + +   + L  F        R            I++S   NP + 
Sbjct: 284 ENALAATAAAATLGVEPEVIAEVLRTFRGVP---HRMEHVAEIDGVAYINDSKGTNPDAA 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+    Q         + + G   +  + + +F   +        +  + + G     
Sbjct: 341 MKALDSYDQ-------PLVLIAGGRNKGSDFT-AFAAKV-----REKVRALVVLGECADE 387

Query: 414 LKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +++ +    +++ + T++            G++V++
Sbjct: 388 IIESMNKVGFSNIYRAHTLEEAVRKAAEVANPGEIVLL 425


>gi|218661509|ref|ZP_03517439.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli IE4771]
          Length = 256

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 86/248 (34%), Gaps = 30/248 (12%)

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D    + L  +      + I ++G++  AD + +  +    +S  +V+++ +    V 
Sbjct: 2   CLDHPEVQSLVGRIE---DRKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVT 58

Query: 286 -------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H   N    + + + L        K L+ F   +   +R+        
Sbjct: 59  ELKGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVK---RRFTLTGEWNG 115

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFH- 389
             + D+ Y  +P  +KA   VL       +GR IAV        L  + E  E +  F+ 
Sbjct: 116 VQIFDD-YGHHPVEIKA---VLRAAREACKGRIIAVHQPHRYSRLASLFE--EFAACFND 169

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            D   +  +Y      + G    +L   +    H    +  + + L   +      GD V
Sbjct: 170 ADSILLAPVYAAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFV 229

Query: 448 VVKSSNSC 455
           V+  + S 
Sbjct: 230 VLLGAGSI 237


>gi|254524866|ref|ZP_05136921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stenotrophomonas
           sp. SKA14]
 gi|219722457|gb|EED40982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stenotrophomonas
           sp. SKA14]
          Length = 469

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 124/370 (33%), Gaps = 34/370 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL     AA        + +TG+ GK+TT  ++   L +       +G+    +   L  
Sbjct: 101 ALWFAEHAADDGIVHDTVCVTGTKGKSTTTALVAHLLRAAGHRTGLVGNIGLPLLEVLDP 160

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              P   ++   EL     GE+        P +AV+  + P HL      +     K  +
Sbjct: 161 QPAP---EYWAVELSSYQTGEVAR--SGAHPQVAVVLNLFPEHLDWHGSEQRYIEDKLRL 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                      LN  D     L     +L    +  F + +    +        EQ   +
Sbjct: 216 VTEAAPR-IAVLNAADPHLAAL-----SLPDSEVVWFNQPQGWHMRG-DVVHRGEQPVFD 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                          G H   N+   L  +  L  D      A+  F P   R +R   A
Sbjct: 269 --------TRNTPLPGRHNRGNLCAVLAALEALGLDAVALAPAVQDFRPLPNRLQRIGVA 320

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   +++S +  P +  AA+   +       G+RIA+L    + G     F   +A
Sbjct: 321 ---DGLAYVNDSISTTPHASLAALECFA-------GQRIALLVGGHDRGLDWTDFMQHMA 370

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD-GDVVVVK 450
             +    I  +  +G  + A+   L  +     H +  +       +++L + G VV++ 
Sbjct: 371 HDVPPVEIVTMGSNGPRIHAMLQPLADAGRFGLHAAGDLPEAMALARAALGEQGGVVLLS 430

Query: 451 -SSNSCGFYR 459
             + S G YR
Sbjct: 431 PGAPSFGAYR 440


>gi|309804760|ref|ZP_07698824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165870|gb|EFO68089.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
          Length = 460

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 128/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F  +S  AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLNKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|300361456|ref|ZP_07057633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
 gi|300354075|gb|EFJ69946.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
          Length = 460

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 120/354 (33%), Gaps = 44/354 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S+A  + +TGS GKTTT  +        LS        +G+    I   +  A    + D
Sbjct: 111 SEAPYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKAT---NKD 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKT 220
             + E+    L         ++P +A I  I    HL      +    AK  I +  ++ 
Sbjct: 168 LLVVEMSSFQLLG----VTDIKPKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQN 223

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRK--WKQCSEQSWMEVQLQ 277
                N+D    + +  +        + +F +  K AD+ +     +   +   M++   
Sbjct: 224 DYFIANFDQ---KNILDRELKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIMKIS-- 278

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H  QN L+ + I  ++ AD      ALS F    G   R +  +   
Sbjct: 279 ------DIKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFT---GATHRLQYVMTYN 329

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + ++S + N  +   AI    +         IA        G L + F  D    L 
Sbjct: 330 DRKIYNDSKSTNIEAATVAIPSFKEPEV-----LIA--------GGLDRGFMFDSLVPLF 376

Query: 398 LYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 377 KKHVKSIVLYGETKYLLADAARKAGIKDIVIVNTLQEAVPRAYELSEAGDVILF 430


>gi|184155049|ref|YP_001843389.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
 gi|226711916|sp|B2GB77|MURD_LACF3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183226393|dbj|BAG26909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
          Length = 458

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 126/352 (35%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I++TGS GKTTT  ++   + ++   +    + N  +        +  D D
Sbjct: 106 GYQVFAGHLISVTGSNGKTTTTTLIEQMV-AMGNPHRVEYAGNIGVSFSKVAEELGPD-D 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RPHIAVIT I   HL      +    AK  I     K  
Sbjct: 164 TIVTEASSFQLLG----APTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ L  +++A    T+  F        +L K ++ + Q   ++  + + +
Sbjct: 220 YLVINWDKEEWQKLAKRTNA----TVVPFS-------RLAKSQEGAYQKGGDLYWRQERI 268

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG    +N L  +    +     +  ++ L+ F    G   R +  L+    
Sbjct: 269 MAAKDVVLIGPQNVENALAAIAAAKLSGVANEAIVRVLTTFT---GVRHRLQYVLDYEGR 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + +  + + A+    Q         I + G +       +     L       
Sbjct: 326 RFYNDSKSTDIEATEVALQGFEQ-------PVILLAGGLDRGYTFER-----LVPYFRE- 372

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--VDGDVVVV 449
           ++  + + G     +K A  ++      E+ D +    ++      GDV+++
Sbjct: 373 HVKALIVFGESKDKMKAAGEQAGVKTIVESTDAVTAVPEAWRLSEPGDVILL 424


>gi|33860582|ref|NP_892143.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|44888175|sp|Q7V3P8|MURC_PROMP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33633524|emb|CAE18481.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 137/385 (35%), Gaps = 42/385 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + A + +  T ++I GS GKT+T   L+  L       + I      I        
Sbjct: 104 HRSEILAMIMNSYTSLSIAGSHGKTSTSTFLSTLLELCTHDSSSITGGIIPIYDS---NA 160

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + E+  S  G I+         I +I  I   H  ++S I+E+ S+  +   
Sbjct: 161 HIENTKYLVTEIDESD-GTIKN----YNSDIGIINNIDFDHCDHYSNIDEVLSSFKKFAS 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K   + +NYD  F +      +    K  +S  +S N  + L       +++  +  
Sbjct: 216 NCQK---LLINYDCKFTK------NNFTSKNQWSIKESNNIAYSLIPNIINKDKTVGKYY 266

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             GK ++++     G H   N+   +    ++        K        + R + +R  +
Sbjct: 267 EHGKFIDIINIPVPGLHNLSNITAAIAACRMVGVSFKEIKKNTESLKLPKKRFE-FRGEI 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI-------SPHGEGRRIAVLGDMCEMGELSQS 387
           NQ    +I + Y  +P  +KA I +               +GR IA+           + 
Sbjct: 326 NQ---RIIYDDYAHHPNEIKATIDLARLFIKDKNSSDREEKGRLIAIF--QPHRFTRVKQ 380

Query: 388 FHIDLAEVLSLYNISHV---WLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFI 437
           F  +  + LS  ++ +V   + +G           + + +   + +V   +    +    
Sbjct: 381 FIHEFVKELSKADVIYVTNIFGAGEKNIDNIDSQLIANLIYKNNKNVTCLKDNYEINEKF 440

Query: 438 QSSLVDGDVVVVKSSNSCG-FYRLI 461
                  D ++   +  C   + ++
Sbjct: 441 FKLTKKNDFIINMGAGDCHNLWSIL 465


>gi|311063967|ref|YP_003970692.1| UDP-N-acetylmuramate--alanine ligase MurC [Bifidobacterium bifidum
           PRL2010]
 gi|310866286|gb|ADP35655.1| MurC UDP-N-acetylmuramate--alanine ligase [Bifidobacterium bifidum
           PRL2010]
          Length = 529

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 149/451 (33%), Gaps = 73/451 (16%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  VV ++ +      +   V   +  +  +++  + A L +   ++ + G+ GKTTT
Sbjct: 87  RGADTVVYSSAIKPDNPEI---VAAHERGIRIVHRSDILALLMNGRRVVTVAGAHGKTTT 143

Query: 123 KEMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             +L+  L           +YA  G+     G  L         D  + E   S     +
Sbjct: 144 SSLLSHILVHAGTGELADPSYAIGGTIQAPGGAVLDGGHAGRG-DVLVAEADESDGSFCK 202

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELL 235
           +     RP IAVIT     HL ++       +A  +       +G + +  DD     +L
Sbjct: 203 Y-----RPSIAVITNALADHLDHYGDEAHYCAAFID--HAGHASGHVVMTGDDEGAVAVL 255

Query: 236 KAKSHALGIKTIYSFGKSKN--ADFQ--------LRKWKQCSEQSWMEVQLQ-------- 277
           +    ++  +TI    K  +   D +               S +    V +         
Sbjct: 256 RDLDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFTVHVPASLASVCG 315

Query: 278 ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                 ++ V     G H A+N    +    +L    + A +A S F    G  +R++  
Sbjct: 316 CGDADLALPVSLAIPGMHNARNATAAILAAMLLGVTPEAATQAASTFL---GASRRFQVR 372

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +   T++D+ Y  +P  + A +    +  P    R   VL     +   ++ F  + A
Sbjct: 373 GEENGVTVVDD-YAHHPTEISALLDAARRRYPRSVIR---VLFQ-PHLFSRTRMFAHEFA 427

Query: 394 EVLSLYNISHVWLSG-------------FHVLALKDALPRSIH---------VHYSETMD 431
           E LS      V ++G                + + DA     H         +   + M 
Sbjct: 428 EALSK--ADDVIVTGIFPARELQRDFPDVSAMTIVDAAQDVPHASAQGDGTWISAVDDMQ 485

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC-GFYRLI 461
                +       DVV    +        +I
Sbjct: 486 VAAQMLAMRCRPTDVVFTVGAGDITAMGAVI 516


>gi|323701286|ref|ZP_08112961.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533888|gb|EGB23752.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 462

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 123/382 (32%), Gaps = 47/382 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V    ++ IPV           +L +A R  ++A I+AITG+ GKTTT  ++      
Sbjct: 92  PPVVQAKAMDIPVI---------GELELAYRF-ARAPIVAITGTNGKTTTTSLIGQMFRD 141

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                   G+    +   +         D  + E+    L      T    P +AV+  +
Sbjct: 142 AGYHTLVAGNIGLPLASEV---ENYSRQDIIVAEVSSFQL----ETTQSFAPRVAVVLNV 194

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL     + E   AK+ IF   ++     LNYDD     + A   +     +  F +
Sbjct: 195 TPDHLDRHGSMAEYIRAKSLIFAHQDQEDWAVLNYDDPVTREMAADCPS----QVLFFSR 250

Query: 253 SK--NADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                    ++  K   ++Q   E+              G H  +N L  +     +   
Sbjct: 251 QHILEKGIYVQDGKIMVADQGVTEITP-----VNTLRIPGAHNLENALAAVAAGYAMGIA 305

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L  F    G   R            I++S   NP +   A+   ++       
Sbjct: 306 ATDLARTLESF---AGVAHRLEYVATIDGVKYINDSKGTNPDAAIKALDAYNE------- 355

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             I + G     G+   S     A  +    +  + + G H   ++ A       +  + 
Sbjct: 356 PIILIAG-----GKNKGSDFTQFARKIKE-KVRVLIVLGLHGYQIEAAARDQGFTNILQA 409

Query: 430 MD--GLFLFIQSSLVDGDVVVV 449
            D              G+VV++
Sbjct: 410 QDYPQAVRLAHQQARPGEVVLL 431


>gi|294338816|emb|CAZ87150.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) MurD [Thiomonas sp. 3As]
          Length = 514

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 127/431 (29%), Gaps = 74/431 (17%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             HA +  A         V   G L +  +     L AL +    A       I+AITG+
Sbjct: 78  APHAAEFAALTQAAAERGVPMAGELHLFQW----ALDALREERGYA-----PKIVAITGT 128

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGMSHLGE 174
            GKTT   +  + L     + A  G+ +  +   L  AR+  D      + EL    L  
Sbjct: 129 NGKTTVTRLTGLMLERAGWSVAVAGNISPSMLDVLQ-ARLQADDLPAAWVLELSSFQLHG 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +           A +  I   HL     +   A+ KA IF      G + LN DD     
Sbjct: 188 MEGFAA----DAATVLNITQDHLDWHGDMTAYAADKANIFGNQSAQGVMVLNCDDPQVLA 243

Query: 235 LKAKSHALGIKTIYSFGKSK-------------NADFQLRKWKQCSE------------- 268
           ++        + +  FG S                D+  R   +                
Sbjct: 244 MQ-----RPGRKLRRFGLSAPQQPGDWGVVREGGIDWLARALPEEDSPRNRRGAAISPQG 298

Query: 269 --------QSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +  E +LQ + +         G H   N L  L +   + A +   + A  
Sbjct: 299 AGQGLGRPGALPEARLQMQRLMPAEALRIQGAHNVANALAALALGDAVGAPLAPMLHA-- 356

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                 G   R +          ID+S   N  +  AA+          E   + + G  
Sbjct: 357 -LREYRGEPHRMQTVAVIDGVRWIDDSKGTNVGATVAAL-------AGMETPVVLIAGGD 408

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  + S               +    L G    A+   L       ++++++       
Sbjct: 409 GKGQDFSPL-------RAQAARLRAAVLIGRDAQAIAAELQGLAPTVFTQSLEQAVQRAA 461

Query: 439 SSLVDGDVVVV 449
           +    GD  ++
Sbjct: 462 TLAKTGDAALL 472


>gi|149186204|ref|ZP_01864518.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
 gi|148830235|gb|EDL48672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
          Length = 429

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 133/414 (32%), Gaps = 71/414 (17%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    +     S  +PV    +       L   AR       ++ ITG+ GK+TT  
Sbjct: 73  GVPLNTHPIKPHADSFGVPVISDIE-------LFAQARADLPPHKVVGITGTNGKSTTTA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L     T     +   +IG+P+       +    + EL    +     LT+ +  
Sbjct: 126 LVHHILE----TAGVPTTMGGNIGLPILEQEPLPEGGVYVLELSSYQID----LTYSLDC 177

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +AV+  I P HL  +    E+  ++K  +FE                   ++A  HA  
Sbjct: 178 DVAVLLNITPDHLDRYDGNFEKYQASKLRLFE-------------------MQASQHAAV 218

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++ +      D     W     +          S        G H  QN    + + 
Sbjct: 219 TENVHRY-PDDPTDV----WGPWDSEDRARDARPLGSQRDWPTLQGPHNGQNAFAAIEVA 273

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   +AL  F     R +R            +++S   N A+   A++    I
Sbjct: 274 YELELSEEAVSRALRTFPGLPHRMERI---AEIAGVAYVNDSKGTNTAASAPALAAFHNI 330

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G     L     +GE       +L  V + Y I     +G    AL D     + 
Sbjct: 331 HWIVGG-----LAKEPGLGE----CEAELGLVKAAYTIGK---AGPDFAALLDG---RVP 375

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
           V   E++D       +    GD V++    +S             F  L+  L 
Sbjct: 376 VEQCESLDRAVTSAAAKAEAGDTVLLSPACASFDQYADFEKRGDHFRELVERLK 429


>gi|33151877|ref|NP_873230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
 gi|33148098|gb|AAP95619.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
          Length = 459

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 129/367 (35%), Gaps = 34/367 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +   L     ++A+ G+ GKT+T  ML   L          IG    + G+   +    
Sbjct: 97  WLHDHLLKDRWVLAVAGTHGKTSTTGMLAWILDQNGIDTGFLIGGVAGNFGISARIG--- 153

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               F + E            +  V   P   VI  +   H   F+ +  I      +  
Sbjct: 154 -STKFFVIEADEYDSAFFDKRSKFVHYSPRTLVINNLEFDHADIFADLAAIQRQFHNLVR 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + ++G I  +  D   + +    +       YS  +    D         ++ S  EV 
Sbjct: 213 TIPQSGCILSSITDQNTQAVLKMGN-------YSELQFSGQDQTWFAQPLVADCSAFEVH 265

Query: 276 LQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            QG K+ +V  + IG H   N LM +         +  A +AL+ F   +   +R     
Sbjct: 266 YQGNKAGQVQWNVIGAHNMHNALMAIAAAHHSGVSITGACQALASFVNVQ---RRLEVKG 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T+ D+ +  +P ++ A I  L   +  G+ R +AVL       ++    H +LA 
Sbjct: 323 VVNNITVYDD-FAHHPTAITATIDALR--AKVGQQRILAVLEPRSNTMKMGVHKH-ELA- 377

Query: 395 VLSLYNISHVWLSGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             SL +   V++             L +    +I    ++ +D L + I       D ++
Sbjct: 378 -TSLQDADSVFIYQPPTIEWQVSEVLANLAQPAIS---ADDVDELVMRIVQQAKPNDHIL 433

Query: 449 VKSSNSC 455
           +  SN  
Sbjct: 434 IM-SNGA 439


>gi|288940819|ref|YP_003443059.1| UDP-N-acetylmuramate [Allochromatium vinosum DSM 180]
 gi|288896191|gb|ADC62027.1| UDP-N-acetylmuramate [Allochromatium vinosum DSM 180]
          Length = 455

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 128/377 (33%), Gaps = 52/377 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTTT  ML   L          IG      GV   L   P    F + E  
Sbjct: 105 VLAVSGTHGKTTTASMLAWVLEDAGLDPGFLIGGVPLDFGVSARLGSAP----FFVVEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  + +I      +   +  +G I   
Sbjct: 161 EYDTAFFDKRSKFVHYGPRTLILNNLEFDHADIFDDLGQIQRQFHHLIRTVPGSGLIV-- 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                       +    + T+   G            D++    +   + S   V L G 
Sbjct: 219 ----------HPARVPAVDTVIGLGCWTPRETFGAEGDWRAELIE--PDGSRFRVWLHGA 266

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              VV  G  G H  +N L  L         V  A++AL  F   +   +R         
Sbjct: 267 EAGVVDWGQSGLHNVENALAVLAAARHAGVPVGAAVEALGRFQGVK---RRLEVRGEVAG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
             + D+ +  +P ++   +  L +     E R +AVL    E    +       AE+  S
Sbjct: 324 IRVFDD-FAHHPTAIATTLDGLRR-RVGAEQRILAVL----EPRSNTMRLGTHNAELAGS 377

Query: 398 LYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L     V++      G+   A+   L   + VH  + ++ +   + +    GD ++V  S
Sbjct: 378 LTAADRVYVHAPSDLGWDAAAVLAGLGERLAVH--DAIEPIVTQVIADSRPGDQILVM-S 434

Query: 453 NSCGFY----RLINLLL 465
           N  GF     RL++ L 
Sbjct: 435 NG-GFGGIHQRLLDALR 450


>gi|148284827|ref|YP_001248917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Boryong]
 gi|146740266|emb|CAM80615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 472

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 133/392 (33%), Gaps = 52/392 (13%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+  +  G         +V      +IP+    D+L                  I IT
Sbjct: 71  DFII--LSPGIPYYTTPHPIVKHAQKYNIPIKSDIDLL---------YNEYPNRKYIGIT 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GK+TT  ++   L+     +   G+          +  +  +V+  + EL    L  
Sbjct: 120 GTNGKSTTSTLIHHILTFTNGKFDIGGNIGK------AVLSLRDNVEGYVLELSSFQLDL 173

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS---- 230
           I  L    +  +AV+  I   H+  +   ++   +K +I     K G   +N + S    
Sbjct: 174 ITDL----KLDVAVLLNITADHIDRYYSFDQYILSKQKILSLATKNGYALINKECSIISN 229

Query: 231 ------FFELLKAKSHALGI--KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                 +    +  + +L +  K I +   +K+   +    +           +  + + 
Sbjct: 230 ANYNTLYASKFRNTTCSLELIKKAINTDELNKSIADESINCQSQPTLVKFSSHIP-QHIN 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  QN+        IL  +      A++ F P      R +    +    + 
Sbjct: 289 FTSLLLGKHNNQNIAAAFYACKILGRNEYDITSAINQFQPLP---HRMQYIGKKNNIHIY 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+  LS I     G  +A      E G  S         V +LY + 
Sbjct: 346 NDSKATNADAASKALLSLSNIYWIAGG--VA-----KEGGVNS--------IVNTLYEVK 390

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
             +L G    AL + L   +    + TM+  F
Sbjct: 391 KAYLYGQSRYALAETLKGVVAFSINNTMEEAF 422


>gi|119469212|ref|ZP_01612196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
 gi|119447464|gb|EAW28732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
          Length = 444

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 113/345 (32%), Gaps = 41/345 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +    L +     A  G+          L  +  D D  + E
Sbjct: 110 TKPVVAVTGSNGKSTVVTLAYDVLKAAGFNVALGGNIGT-----AVLDLLNDDFDVYVLE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A +  ++  HL  +   +    +K  I+ G   T  I +N
Sbjct: 165 LSSFQLD----TTTSLKSVSATVLNVSEDHLDRYDSYQAYIDSKLSIYNG---TQCIVVN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            DD      +    +        FG  +       K+               ++   V  
Sbjct: 218 EDDK-----QTHPSSSSATAKIGFGTQQG------KYCLGQHNCSTYFFANNEAFLPVDT 266

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L  + ++S      +   KAL+ F    G   R +    Q      ++
Sbjct: 267 LAVVGKHNYLNTLAVMALLSPFNISKEAYKKALNEFS---GLAHRCQFVTQQHGVKYFND 323

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI  L+  + +     I + G   +  +L+        +     ++  +
Sbjct: 324 SKATNVGATIAAIDSLATETQN----LIVIAGGDAKGADLNP------LKPYLQKHVKAL 373

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     L     +S   H +  M       +     G+VV++
Sbjct: 374 ICFGKDAKKLVALSSKS---HLTNNMSEAVNLAKQLSSPGNVVLL 415


>gi|119897159|ref|YP_932372.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Azoarcus sp. BH72]
 gi|119669572|emb|CAL93485.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 448

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 125/365 (34%), Gaps = 33/365 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  +L   L          G     +     ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTTSLLAWMLEDAGL---SPGFLVGGVPKNFGVSARLTDSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F+ +  I +    +   L + G I  N 
Sbjct: 162 YDTAFCDKRSKFVHYRPRTAILNNLEFDHADIFADLAAIETQFHHLVRTLPRQGRIVANA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +   + + A+     ++           D         +  +    +L  + +  V   
Sbjct: 222 REDALKRVLARGCWSELEWF--------NDAAQWSAAAGARDAEAVFRLGDEELGRVEMP 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L  +     +      AI +L+ F   EG  +R           + D+ +
Sbjct: 274 LAGSHNRENALAAIAAARHVGVPPQQAIASLARF---EGIKRRLELRGRARGVAVYDD-F 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVW 405
             +P ++   +  L +  P   GR +AVL    E    +    +  A++  SL     V+
Sbjct: 330 AHHPTAIALTVEGLRRREPE--GRILAVL----EPRSNTMKLGVMKAQLPGSLAQADAVF 383

Query: 406 LS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----R 459
               G    A     P        E +  L   + ++   GD V+V  SN  GF     +
Sbjct: 384 CYAGGLGWDAAAALAPLGERAQVHEDLGALVQAVAATARPGDHVLVM-SNG-GFGGVHQK 441

Query: 460 LINLL 464
           L++ L
Sbjct: 442 LLDAL 446


>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
 gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
          Length = 452

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 127/354 (35%), Gaps = 34/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L    R  S A +IAITG+ GKTT   ++     +        G+    +   L    M
Sbjct: 101 ELFAQYRPTS-AKVIAITGANGKTTVTTLVGEICKAAGLKTIVAGNIGLPVLDAL----M 155

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L      T  ++   A +  ++  H+  ++  ++ A AKA IF  
Sbjct: 156 METPDVYVLELSSFQL----ETTSNLQIDAATMLNLSEDHMDRYASFQDYAIAKARIFYN 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +      LN DD++  ++     A       +FG   + +      KQ    +W+    
Sbjct: 212 AKLQ---VLNRDDAWSMMMARPKLAQ-----VTFGLDDDGEETSYGLKQVDGDTWLCEGD 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +          +G H A N L  + +   +  D    I+ L  F   +G   R     N 
Sbjct: 264 KELINLQDLKIVGLHNAANALAAVALCRGIGVDYAHIIQTLYNF---KGLPHRVEWVANI 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 D+S   N  +  AA++ L+Q       + + + G   +  + +           
Sbjct: 321 DDVDYYDDSKGTNVGATCAALTGLAQ-------KVVLIAGGDGKGQDFTP------LAAA 367

Query: 397 SLYNISHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              N S V L G     ++ A LP +I ++ +  +       +      + V++
Sbjct: 368 VAENASAVVLIGRDAPLIEAALLPTNIPLYQAADLPEAVNIAKKLAKADEAVLL 421


>gi|168210142|ref|ZP_02635767.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170711753|gb|EDT23935.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 874

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 133/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------IGSYNNH--IGVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C       IG+   H         AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     KQ +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKQGNPIVF 649

Query: 272 ME-----VQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGVNVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|290476455|ref|YP_003469360.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           bovienii SS-2004]
 gi|289175793|emb|CBJ82596.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           bovienii SS-2004]
          Length = 436

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 123/347 (35%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   I+AITGS GK+T   ++              G+        L L + P      
Sbjct: 101 REATTPIVAITGSNGKSTVTTLVGEMAKEAGWQVGVGGNIGIP---ALELLKQP--CQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A +  +   H+     G+ +  +AK  I++  +    
Sbjct: 156 VLELSSFQL----ETTYSLKAAAATVLNVTEDHMVRYPDGLSQYRAAKLRIYDQAK---V 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D+          A       SFG    A      ++  S +  + V  Q     
Sbjct: 209 CVVNEQDAL-----TLPEAGKDSRCISFGVDSGA------YQLESGRQQLVVNHQSLLET 257

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +    + +I+A        G   R++    +     +
Sbjct: 258 RQIRLTGQHNYTNGLAALALADAVGIPREASIQA---LQTYPGLEHRFQVVHMRNGVRWV 314

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L+      EG    +LG     G+   +    L   +S  NI 
Sbjct: 315 NDSKATNVGSTQAALSGLT-----LEGTLYLLLG-----GDGKAADFTPLQPYVSGNNI- 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P  I V  +ETM+     I   L+ GD+V++
Sbjct: 364 RLYCFGCDGNQLAQLRPE-ISVL-TETMEQAMRKIAPKLMTGDMVLL 408


>gi|255533212|ref|YP_003093584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
 gi|255346196|gb|ACU05522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
          Length = 447

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 35/354 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A+  +KA  I ITGS GKTTT  +    L +        G+  +     +       D 
Sbjct: 97  FAKRYTKAKTICITGSNGKTTTTMLTYHILKNAGLNVGLAGNIGHSFAAQV----ASADF 152

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E+    L ++    +  +  IAV+  I P HL  +   +   A++K  I +    
Sbjct: 153 DWYVLEISSFMLDDM----YDFKADIAVLLNITPDHLDRYDYKLGNYAASKMRITQNQTS 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   DD   E LKA  +       Y F   K    ++ K       +         
Sbjct: 209 EDIFIYCADDE--ETLKALKNVKVDSKTYPFSIRK----KIEKGAYLESNNIHININLND 262

Query: 280 SMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            + +        G H   N + +  +  +L        +++  F   E    R       
Sbjct: 263 QLTMSITELALQGKHNIYNSMASGIVAKVLDIRNTAIRESMGDFKNIE---HRLEHVARI 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  S   A+  +           I ++G + +  +       D+ + +
Sbjct: 320 SGVDYINDSKATNVNSTWYALESVGT-------DVILIMGGVDKGNDY------DMLKDM 366

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     + +A    + +  +  +              G+ V++
Sbjct: 367 VRQKVKAIVCLGKDNKRIHEAFEDDVEIIVNTFSAHEAVQVAYHLAKKGNTVLL 420


>gi|126695359|ref|YP_001090245.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542402|gb|ABO16644.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 448

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 138/392 (35%), Gaps = 41/392 (10%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           ++ L   ++  + A L    T +A+ GS GKT+T   L+  L    +  + I      I 
Sbjct: 77  ENNLSIKHRSEILAMLMRTYTALAVAGSHGKTSTSTFLSTILELCTRNSSSITGGIIPIY 136

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                     +  + + E+  S  G I    +  +  I +I  I   H  +FS + E+ S
Sbjct: 137 NSNCHL---DNTKYLVAEVDESD-GTI----NKYKSDIGIINNIDFDHCDHFSNLNEVIS 188

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                 +  +K   + LN+D           +       +S   +KN  + +   +  S+
Sbjct: 189 TFKSFAKNSKK---LLLNFDCETSR------NNFYSNWKWSNSTAKNVTYAIIPIEINSK 239

Query: 269 QSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +  +    G  +  +     G H   N+   +    ++  D     K +      +   
Sbjct: 240 YTIGKYYENGNFISSLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPK--- 296

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEM 381
           KR+         +L D+ Y  +P  +K  I +   +          + R IA+       
Sbjct: 297 KRFEFRGQLDERSLYDD-YAHHPNEIKETIKLGRLLIQQNHNKECQKSRLIAIF--QPHR 353

Query: 382 GELSQSFHIDLAEVLSLYNISHV---WLSGFH------VLALKDAL-PRSIHVHYSETMD 431
               + F  + AE LS  ++ +V   + +G           + D +  ++ +V Y     
Sbjct: 354 YSRVKQFTKEFAEELSKADVIYVTSIYGAGEGNEDRITSKIITDLIYKKNKNVSYINNYY 413

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG-FYRLIN 462
            +          GD+++   +  C  F+ ++N
Sbjct: 414 EVTKNFYELTQKGDLILNMGAGDCHNFWSILN 445


>gi|86137685|ref|ZP_01056262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
 gi|85826020|gb|EAQ46218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
          Length = 465

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 115/376 (30%), Gaps = 37/376 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + +PV     +  A         L     ++AITGS GK+TT  +L   L S+ +    
Sbjct: 92  EVGVPVDNDIGLFFASLPAQGWDMLDQPPKVVAITGSNGKSTTVALLHHILESVGRDSQM 151

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+    +         P +    + EL          L   + P +A++T ++P HL  
Sbjct: 152 AGNIGRGVLDIDP----PGEAGVVVLELSSYQ----TELARALTPDVAILTNLSPDHLDR 203

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADF 258
            +G+    +AK  +F          +  D+     L  + S A     +      +    
Sbjct: 204 HAGLGGYFAAKRRLFAEGGPD-RAIIGVDEDEGLFLAGQMSQAASDDRVIRVASGRK--L 260

Query: 259 QLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
               W+  + + ++    +G+      +  +    G H  QN         +L       
Sbjct: 261 TGPGWQVFARKGFLSEMRKGRQVASIDLRQMTGLPGAHNHQNACAAYAAARVLGLAPRVI 320

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
               +      G   R +          +++S   N  S   A+S    I      R I 
Sbjct: 321 ---EAALATYPGLPHRSQTVAEVAGVRYVNDSKATNLDSAIKALSAFKNI------RWIC 371

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
                       +      A       +   ++ G        A+   +      TM+  
Sbjct: 372 ---------GGLEKEGGLGALTGQTGAVRKAYVIGREAAGF--AMQLDVEAEVCTTMERA 420

Query: 434 FLFIQSSLVDGDVVVV 449
                +    GDVV++
Sbjct: 421 VACAVAEAEPGDVVLL 436


>gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
          Length = 458

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 115/352 (32%), Gaps = 49/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  +TGS GKTTT  ++   L          G+    +   +         D  + E
Sbjct: 116 PAKIYGVTGSDGKTTTTTLIYNMLKEQGYKSWVGGNIGAPLFSRI---EEIDPEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V P +AVIT I+P HL     +EE  +AK  IF+       + LN
Sbjct: 173 LSSFQLMGMD-----VSPEVAVITNISPNHLDIHKDMEEYVNAKKSIFKYQGNQDVVILN 227

Query: 227 YDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            D+       +  K K     I+   + G     D      K+  + S ++++       
Sbjct: 228 RDNECTNAMVKEAKGKVRQFSIEEELTSGGYLKGDILCIDGKKVCKISEVKLR------- 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N+L     +      VD   K  + F   E R +  R           
Sbjct: 281 ------GMHNVANLLTAFSAIKE-DVSVDNMKKVATTFEGVEHRCEFVR---ELDGVKYY 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S  ++P    A +    +         I + G         +    D+        I 
Sbjct: 331 NDSIASSPTRTLAGLRAFDK-------PVILIAGG------YDKKIPFDVLAEEGYSKIK 377

Query: 403 HVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + L G     +K +  +        + +   +++       +    +GD+V
Sbjct: 378 TLILMGATKDKIKKSFEKLKCEKGIDVPIVSVDSLTDAVNVAKELSTNGDIV 429


>gi|312136564|ref|YP_004003901.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224283|gb|ADP77139.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 492

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 157/470 (33%), Gaps = 80/470 (17%)

Query: 48  GPHYD--GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           G   D  GHD  L  ++K A  + +     +   +  +      +    L K+    + +
Sbjct: 51  GIKLDLGGHD--LSLIKK-ADAIAIA---PSLTNNKKVLNLINKNPKAELIKIEDILKYK 104

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDF 162
            K  ++ ITG+ GKTTT+EML   L         +      N     PL  AR+P DV  
Sbjct: 105 VKKPVVGITGTNGKTTTREMLKNILKISGLEVPEHHLNIQGNTEFIPPLQ-ARLPGDV-- 161

Query: 163 GIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            + E+G   +  EI+         + VIT I+  HL N    +E    K EI E  +K  
Sbjct: 162 AVVEIGTFGVKNEIKRSAKNSNVTVGVITNISRDHLKNI-SFQEYVECKKEITEVAKK-- 218

Query: 222 TIFLNYDDSFFELLKAKS------HALGIKTIYSFGKSKNADFQLRKWK----------- 264
            + LN DD         +        L IK  + F + ++  F  +  K           
Sbjct: 219 -LVLNADDPIVASFGNDNTVYYGIENLKIKIKHFF-EDRDCPFCGKNLKYEEIFLGHLGK 276

Query: 265 ----------------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                              E     + +      V     G     N L       IL  
Sbjct: 277 YECECGFKRPRPTVKAIDVENKKFILSIDSNEGLVKLEYGGIFNVYNALAAAAAAFILKI 336

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D D  I+ L+ F    GR +     + +    +ID  Y  N A +KA +  +       +
Sbjct: 337 DFDKIIEGLNTFKKVPGRME----KIYKKPEIIID--YAHNVAGVKAILQTIK-----PK 385

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI------------SHVWLSGFHVLALKD 416
           GR I V     E G       I +A++LS  +I             +   +  +V + + 
Sbjct: 386 GRLIVVNTISSESGIKED---IKIAKILSSADILIPASYSARKASKYTNTTVINVKSTEK 442

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR-LINLLL 465
              +         ++       S     D +++       + R +I  + 
Sbjct: 443 KFKKGTLGASKFQVEEAIKKALSYADKNDTILIIGEGGVKYGREIIEKIK 492


>gi|311104877|ref|YP_003977730.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
 gi|310759566|gb|ADP15015.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
          Length = 857

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 136/399 (34%), Gaps = 57/399 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A+ G+ GKTTT  +    L +         S   ++     
Sbjct: 455 EAIIANMYADGDDGRIPVVAVAGTNGKTTTVRLTAHILGAAGNRVGMTNSDGVYVDNLRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          M  DVD  +FE   +  G +R      R ++A++T I    HL  
Sbjct: 515 DTGDCSGPRSARSVLMHPDVDAAVFE--TARGGILREGLAFDRCNVAIVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + +  +GT  LN  D     + A        +I  F + +N  
Sbjct: 573 GYISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMAASCPG----SITYFAEDRNHP 628

Query: 256 --ADFQLRKWK---------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             A  + +  +           ++Q   E +    ++ +  +G      +N + ++    
Sbjct: 629 VLATHRAQGLRCVYRDGDAIVTAQQGAEETRYPLAAIPLTRNGTITFQVENAMASIAAAW 688

Query: 305 ILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            L  D D   + L+ F +  +    R+     +G   + D  Y  NP ++ A +  +  +
Sbjct: 689 ALGLDTDIIRRGLATFVNDAQTAPGRFNVFDYRGATVIAD--YGHNPDAILALVRAVDAM 746

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLA 413
                 RR  V+    +  +       ++           V L           G  +  
Sbjct: 747 PAK---RRSVVISGAGDRRDEDIRMQTEILGDA----FDDVLLYQDQCQRGRADGEVLAL 799

Query: 414 LKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           L+  L  +    + E + G         + L  GD+ ++
Sbjct: 800 LQQGLVNASRSKHVEEIHGEFLAIDTALARLGAGDLCLI 838


>gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 252

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 28/239 (11%)

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E  K  + A     + ++G    AD Q +      +     V      +EV  
Sbjct: 2   NADDPSVEYFKKITSA----EVITYGIHNGADVQAKNITLRPKGIRFLVSSFNGEIEVNL 57

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G     N L  + +  +    +     +LS     EGR +      NQ F  ++D  
Sbjct: 58  NLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI--IDENQDFLVIVD-- 113

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  +S +S+ S   +G+ I V G     G+        +  +   Y+   V+
Sbjct: 114 YAHTPDALENVLSTISEFS---KGKVITVFGC---GGDRDAKKRSIMGGIAGSYS-DFVF 166

Query: 406 LSGFH---------VLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVV--KS 451
           ++  +         +  ++    ++ +++Y   +D         +     D+V++  K 
Sbjct: 167 ITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKG 225


>gi|302386831|ref|YP_003822653.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
 gi|302197459|gb|ADL05030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
          Length = 448

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 123/355 (34%), Gaps = 40/355 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   +K  + AITG+ GKTTT  +    + +       +G+    IGVP T   +    D
Sbjct: 100 AYHHAKGKLAAITGTNGKTTTTALTGEIMKAHYDQVFVVGN----IGVPYTEEALKTGGD 155

Query: 162 -FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E+    L  I       RP ++ I  I P HL     +E     K  I       
Sbjct: 156 SVTVAEISSFQLETITDF----RPDVSAILNITPDHLDRHKTMECYIEVKERITSNQRPQ 211

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +  LN+DD       A   AL  K +Y   +      Q  +   C E   +     G+ 
Sbjct: 212 DSCILNFDDPVLREFGA---ALTPKAVYFSSR------QFLEEGYCMEGDRIIWNHNGEK 262

Query: 281 ME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            E         +G H  +N++    I + +   +D   K +  F   E    R      +
Sbjct: 263 TEIANIHEIQLLGRHNHENIMAAAAISAQMGVPMDVIRKVVREFKAVE---HRIEFVAEK 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   NP    AAI  +  +     G  + + G     G    S + +  E  
Sbjct: 320 AGVKYFNDSKGTNPD---AAIQAIKAMP----GPTLLIAG-----GYDKNSQYDEWIESF 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               + ++ L G     + +   R    +V Y+E M        S    GD V++
Sbjct: 368 DG-KVKYMVLLGQTREKIAECAARHGFTNVMYAEDMQEAVKVCASYANRGDHVLL 421


>gi|309807734|ref|ZP_07701668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168994|gb|EFO71078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
          Length = 460

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 128/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F  +S  AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLTKANVVTFSEESTQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|291301480|ref|YP_003512758.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570700|gb|ADD43665.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 454

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 109/347 (31%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +AITG+ GKTT   ML   L++     A +G+    +   +T      D D 
Sbjct: 99  RPADAAPWLAITGTNGKTTAVTMLASILTAAGLKTAALGNIGTPLVDAVT-----ADYDV 153

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L      +  + P +  +  +A  HLS     +  + AK  I+ G      
Sbjct: 154 LAVELSSQQL----HWSKQLSPRVGALLNLADDHLSWHGDFDAYSHAKTAIWRG----DV 205

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD     L   +        ++ G+     F +R  K         V L   +  
Sbjct: 206 HIGNADDPRVSALLKDAPG-DTPITFTLGEPSPGQFGVRDGKLVDNTGTAPVALCDVAA- 263

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L    +        +      + + P+  R          G    +
Sbjct: 264 --IRPTGIHNVANALAATAVARAFGVPAEAVAAGFASYVPEPHRNVEIATV---GGVRYV 318

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   NP +  AAI     I     G+   V  D+  + E +            L  + 
Sbjct: 319 DDSKGTNPHATAAAIEAYDPIVWIAGGQLKGV--DVETLVERAAPR----LRGAVLLGVD 372

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L+G       D    +I     E M        +    GD V++
Sbjct: 373 RAILAGLLAKHAPDVPVVTIDRTDPEAMTDAVTAAAAMARPGDTVLL 419


>gi|171742518|ref|ZP_02918325.1| hypothetical protein BIFDEN_01630 [Bifidobacterium dentium ATCC
           27678]
 gi|171278132|gb|EDT45793.1| hypothetical protein BIFDEN_01630 [Bifidobacterium dentium ATCC
           27678]
          Length = 532

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 121/369 (32%), Gaps = 45/369 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV ++ +      +       + ++   ++  + A L      + + G+ GKTTT 
Sbjct: 99  GARTVVFSSAIKPDNPEIVAAYEAGERIV---HRSDILALLMQSKRAVTVAGAHGKTTTS 155

Query: 124 EMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            ML   L +         +YA  GS     G  L            + E   S     ++
Sbjct: 156 SMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGS-VLVAEADESDGSFAKY 214

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P IA+IT     HL ++    +  +A  E          + +  DD     +  
Sbjct: 215 -----HPEIAIITNAEADHLDHYGTEAKYRAAFVE--HAGCAGKAVIMCGDDDGALAVLR 267

Query: 238 KSHALGIKTIYSFGKSKNADFQLRK------WKQCSEQS-----WMEVQLQG-------K 279
                  + +  +    + D            +  SE +        + L         +
Sbjct: 268 ALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESTQSGAEHFILHLPAGLVDVEER 327

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G H A+N    L    +L  DV+ A  A + F    G  +R++   +    
Sbjct: 328 RVPVTLTVPGIHNARNATAALLAAVMLGVDVERAAAAATSFL---GAARRFQIRGSVNQV 384

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID+ Y  +P  + A +    +  P      I        +   +  F  + AE L+  
Sbjct: 385 TVIDD-YAHHPTEIAALLDAARRRYPEAGIHVIF----QPHLFSRTMFFAREFAEALAK- 438

Query: 400 NISHVWLSG 408
               V ++G
Sbjct: 439 -ADDVIVTG 446


>gi|67906497|gb|AAY82604.1| predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured bacterium
           MedeBAC35C06]
          Length = 434

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 128/354 (36%), Gaps = 37/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV 160
           A L  +  +IA+TG+ GKTTT  ML              +G  + H      +       
Sbjct: 95  ADLTKEENLIAVTGTHGKTTTSYMLCHIFIENGIDIGYLVGGISPHFQDSAKIGT----A 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +  I E            +  +   PH  +I  I   H   F  I++I      + + + 
Sbjct: 151 NIFIIEGDEYDSALFDKRSKFINYNPHSIIINNIEFDHADIFRDIDDIKRQFHHLVKIIP 210

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G+I  ++DD   + +        +  I      ++  +     +    +    +    
Sbjct: 211 NDGSIMYHHDDPNIKDVINLGSWSKMLPI----GEEDLFYSYENREMTFNKINYSLT--- 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N +  + +       +  +I+ALS F   +   +R     ++  
Sbjct: 264 -----ALPLKGIHNFKNYVAAIYMAYQYGVPIKKSIQALSNFSGVK---RRQELVYDKNN 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVL 396
            ++ID+ +  +P ++K  I  +   +P        ++G + E+G  + +   HIDL    
Sbjct: 316 ISIIDD-FAHHPTAIKLTIESIKHENPKKN-----IIG-IIELGSNTMASGKHIDLLINA 368

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +  ++  ++       ALKD L +        ++D L   + + +    ++++ 
Sbjct: 369 AN-DLDSIYWYDPR-HALKDKLFKKT----FNSLDDLHKDLLAKIQTDSIILIM 416


>gi|169344245|ref|ZP_02865227.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297704|gb|EDS79804.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
          Length = 874

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 133/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------IGSYNNH--IGVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C       IG+   H         AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     KQ +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKQGNPIVF 649

Query: 272 ME-----VQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGVNVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|116629840|ref|YP_815012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238853968|ref|ZP_04644325.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311110519|ref|ZP_07711916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
 gi|122273222|sp|Q042P8|MURD_LACGA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116095422|gb|ABJ60574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833413|gb|EEQ25693.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311065673|gb|EFQ46013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
          Length = 460

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 119/354 (33%), Gaps = 44/354 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S+A  + +TGS GKTTT  +        LS        +G+    I   +  A    D D
Sbjct: 111 SEAPYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKAT---DKD 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKT 220
             + E+    L         ++P +A I  I    HL      +    AK  I +  ++ 
Sbjct: 168 LLVVEMSSFQLLG----VTDIKPKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQN 223

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRK--WKQCSEQSWMEVQLQ 277
                N+D    + +  +        + +F +  K AD+ +     +   +   M++   
Sbjct: 224 DYFIANFDQ---KNILDRELKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIMKIS-- 278

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H  QN L+ + I  ++ AD      ALS F    G   R +  +   
Sbjct: 279 ------DIKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFT---GATHRLQYVMTYN 329

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + ++S + N  +   AI    +         IA        G L + F  D    L 
Sbjct: 330 DRKIYNDSKSTNIEAATVAIPSFKEPEV-----LIA--------GGLDRGFMFDSLVPLF 376

Query: 398 LYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 377 KKYVKSIVLYGETKYLLADAARKAGIKDIVIVNTLQEAVPRAYELSEAGDVILF 430


>gi|227514825|ref|ZP_03944874.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086815|gb|EEI22127.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|299783027|gb|ADJ41025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus fermentum
           CECT 5716]
          Length = 466

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 126/352 (35%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I++TGS GKTTT  ++   + ++   +    + N  +        +  D D
Sbjct: 114 GYQVFAGHLISVTGSNGKTTTTTLIEQMV-AMGNPHRVEYAGNIGVSFSKVAEELGPD-D 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RPHIAVIT I   HL      +    AK  I     K  
Sbjct: 172 TIVTEASSFQLLG----APTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ L  +++A    T+  F        +L K ++ + Q   ++  + + +
Sbjct: 228 YLVINWDKEEWQKLAKRTNA----TVVPFS-------RLAKSQEGAYQKGGDLYWRQERI 276

Query: 282 --EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   IG    +N L  +    +     +  ++ L+ F    G   R +  L+    
Sbjct: 277 MAAKDVVLIGPQNVENALAAIAAAKLSGVANEAIVRVLTTFT---GVRHRLQYVLDYEGR 333

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S + +  + + A+    Q         I + G +       +     L       
Sbjct: 334 RFYNDSKSTDIEATEVALQGFEQ-------PVILLAGGLDRGYTFER-----LVPYFRE- 380

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--VDGDVVVV 449
           ++  + + G     +K A  ++      E+ D +    ++      GDV+++
Sbjct: 381 HVKALIVFGESKDKMKAAGEQAGVKTIVESTDAVTAVPEAWRLSEPGDVILL 432


>gi|149926397|ref|ZP_01914658.1| cyanophycin synthetase [Limnobacter sp. MED105]
 gi|149824760|gb|EDM83974.1| cyanophycin synthetase [Limnobacter sp. MED105]
          Length = 870

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 111/347 (31%), Gaps = 43/347 (12%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV  A+  L        +  ++A+TG+ GKTTT  ++   L          G+    + 
Sbjct: 457 RDVGAAVIDLMFKKDENGRIPVVAVTGTNGKTTTVRLIEQILRYHNLRVGFTGTEGVVVN 516

Query: 149 VPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-A 195
             L                +  + D  + E      G +R         + ++T I    
Sbjct: 517 GHLIDTGDCSGPKSAHKVLVHPEADAAVLECA--RGGMLREGLGFDMCDVGIVTNIGEGD 574

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           HL       +E++A  K+ + + +   G   LN DD     +   +       +  F  +
Sbjct: 575 HLGLNFIDSVEDLALLKSVLVQNVAPNGLAVLNADDRHAANMAKLTPG----RVLFFTSN 630

Query: 254 KNADFQLRKWKQCS-----EQSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMTLG 301
            +         +       +   + +             + + ++G+     QN++  + 
Sbjct: 631 PDNPIVAAHKAKGRPVIIHDGRVINISYDDMEKTIDLMDVPLTNNGLFTFQVQNVMCAVA 690

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               L    +T   AL  F         R+    ++G   + D  Y  NP ++   ++ L
Sbjct: 691 AALGLNVPFNTIRAALGSFQSTPDTVPGRFNFFKHKGGSVIAD--YGHNPDAVSTLVNTL 748

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             I      RR  V+      G+       +   ++  +   H+ L 
Sbjct: 749 KNIPAV---RRTVVISA---AGDRRDQDITEQGRLVGGF-FDHIILY 788


>gi|253580162|ref|ZP_04857429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848681|gb|EES76644.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 117/349 (33%), Gaps = 38/349 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITG+ GKTTT  +L   +   +++   +G+             M  +    + E
Sbjct: 108 DGEVLAITGTNGKTTTTALLGKIMQDARESVFVVGNIGTPYTSKA--LEMKPNSIT-VAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I        P ++ I  I   HL+    +EE    K  I E         LN
Sbjct: 165 ISSFQLETIDEFA----PKVSAILNITEDHLNRHHTMEEYIRVKELITENQGTEDVCVLN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
           Y+D                 +  F   +  D          + + + ++   K +EVV  
Sbjct: 221 YEDEVLREFGKHL----TPRVVYFSSGRKLD-----EGIYLDGNKIILKDGEKEIEVVKT 271

Query: 285 --HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N++  + +       +D+  K++  F        R      +      
Sbjct: 272 EDLKLLGKHNFENVMAAVAMAYYDGVSLDSIRKSICEFTAVA---HRIEYVTEKKGVVYY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +    I  ++        R   ++G     G   QS + +  E      + 
Sbjct: 329 NDSKGTNPDAAIKGIQAMN--------RPTLLIGG----GYDKQSGYDEWIEAFDG-KVR 375

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ L G     +K+A  +     +   E +       +     GD V++
Sbjct: 376 YLVLIGQTKEKIKEAAEKHGFHDIILCEDLKEAVKVCEEKAQPGDAVLL 424


>gi|153822243|ref|ZP_01974910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|126520253|gb|EAZ77476.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
          Length = 282

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 110/283 (38%), Gaps = 29/283 (10%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S+   I   T  ++   A    ++  H+  + G+E+   AK  IF+  E   T  +N
Sbjct: 1   MCLSYQAPIE-TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVN 56

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   +     +  L    + +FG  + A F L    Q   + ++  + +         
Sbjct: 57  ADD--TQTFPDHAAHL---QVVTFGVEQAAQFSL---AQHQGREYLFARDEAVMACAELS 108

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L  L ++     +   A+ A        G   R +   +      +++S 
Sbjct: 109 LVGRHNVANVLTVLALLDSAGVNFRLALDA---LKSYTGLTHRCQVVADNHGIKWVNDSK 165

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + +      LA VL+   +  +  
Sbjct: 166 ATNVASTLAALSGLK-----IEGQLYLLVGGVGKGADFTP-----LAPVLATLPV-QLCC 214

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 215 FGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 254


>gi|88707116|ref|ZP_01104810.1| cyanphycin synthetase [Congregibacter litoralis KT71]
 gi|88698628|gb|EAQ95753.1| cyanphycin synthetase [Congregibacter litoralis KT71]
          Length = 928

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 125/395 (31%), Gaps = 54/395 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----------- 156
             I AITG+ GKTTT  ML   L     T     +   +I   LT+A             
Sbjct: 491 IPIAAITGTNGKTTTSRMLAHILKMSGLTVGQTSTDGVYIDGRLTVAGDMTGPTAAQIVL 550

Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
               V+  + E   +  G +R      R +++    IA  HL       +E++A  K  +
Sbjct: 551 RDPSVNAAVME--TARGGILRSGLGYQRSNVSACLNIAADHLGLKGVDTLEDLAEVKRVV 608

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY------SFGKSKNADFQLRKWKQCS 267
            E         LN DD     +     A  +  +          +   A       +Q  
Sbjct: 609 VE--VARDAAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGI 666

Query: 268 EQSWMEVQLQGKS---------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               + +  +            +     G   H  QN +    +   +  D++   + L 
Sbjct: 667 NGGMITLYDENGHNIPLLWTHLIPATLEGRALHNVQNAMFAAALAYHMHVDLENIRQGLR 726

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +        ++  F +I + Y  NPA++K    V+ +      GR+I VL  M
Sbjct: 727 TFDSTFFQSPGRLNVYDKHPFKVILD-YAHNPAAVKMVCDVVDRY--EIGGRKIVVL-TM 782

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHV 424
              G+      +++A + +  +  H                  G     L +       +
Sbjct: 783 P--GDRRDEDIVEVAGIAAG-HFDHYICRRDDNLRGREPGEVPGLLKRGLLEGGVSDDSI 839

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              E  +            GD+V++ + +    ++
Sbjct: 840 QLIEREEDANQAALEMARGGDLVLILADHVTRSWK 874


>gi|297243802|ref|ZP_06927732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
 gi|296888223|gb|EFH26965.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
          Length = 533

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 150/389 (38%), Gaps = 46/389 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           D HDF      K   +V        T  +    S +IPV    +V  A      + R   
Sbjct: 65  DIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMS--EVELAWRLRVPSNRTNK 122

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITG+ GKT+T EM +  L++       +G+    +    + A +  + D    E
Sbjct: 123 PAYWIGITGTNGKTSTTEMTSAMLTTCGLNAPAVGNIGKSV----SHAALECEHDALCVE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A IT IA  HL    G+E  A  K+++F  ++K   +  N
Sbjct: 179 LSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSKVFNNVQK--ALVYN 232

Query: 227 YDDSFFELLKAKSH-ALGIKTI-YSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGK 279
             D     L   +  A G K I ++ G+ K+ +  ++          +  +   ++   +
Sbjct: 233 AQDERVSKLADCAQVADGCKKIGFTLGEPKDGEIGVKDGWIVDNSGVAGGTKGTLKPIVE 292

Query: 280 SMEVVHH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             E+ H       +  H+  + L  L +   LT DVD++++AL  F P   R +     +
Sbjct: 293 LRELKHLCEPDGSVYPHLLADALTALALSLGLTGDVDSSVRALREFTPGGHRIQTVATLM 352

Query: 335 NQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++          +D+S   N  +  A+++  +  S       IA        G L++  H
Sbjct: 353 SEDENPSHCIRFVDDSKATNAHAACASLASFANNSVVW----IA--------GGLAKGGH 400

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +      L+ I  V + G     + +AL
Sbjct: 401 FEDLIANQLHVIKAVVVIGIDQRPIVEAL 429


>gi|239917860|ref|YP_002957418.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus NCTC
           2665]
 gi|239839067|gb|ACS30864.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus NCTC
           2665]
          Length = 495

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 125/392 (31%), Gaps = 39/392 (9%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L  L++    A       ++A+ G+ GKTTT  M  +A S           ++  
Sbjct: 98  AVARGLRVLHRSEGLALAMRGHRVLAVAGTHGKTTTSSMAAMAFSDAG--------WDPT 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             V   +A +  +   G  E  ++   E           I ++TT+   HL ++   E +
Sbjct: 150 FAVGAAVAGLGTNARAGQGEWFIAEADESDGTLVNYPSTIGIVTTVEADHLDHYGTEEAV 209

Query: 207 ASAKAEIFEGLEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQ 259
                +   GL      G +    DD+    L A +       + ++G +       D  
Sbjct: 210 HQVFRDFAGGLPAAAQGGVLVACLDDAGAADLAAWAREHAAADVVTYGSAPRDGVAPDLL 269

Query: 260 LRKWK----QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +        +         ++  G +  +     G H A N    +          + A+
Sbjct: 270 VTDLAVEPGETGVGQRATFRMADGPARTLHLQVPGRHNALNAAAVVLAAVRAGMAFEAAV 329

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + +  F    G  +R+          + D+ Y  +P  + AA+S    ++      R+ V
Sbjct: 330 RGVEAF---RGTARRFEFRGAARGVRVFDD-YAHHPTEVAAAVSAGRAVAADA---RVHV 382

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDAL--PRSIH 423
           L     +   ++ F  + A  LS  +   V            G     +   L    +  
Sbjct: 383 LFQ-PHLFSRTRDFAAEFAAALSGADAVRVLPVYAAREEPMPGVDSSLIASRLTTGAAED 441

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +E        + +    GDVV+   +   
Sbjct: 442 RVVAEDRAEAVRSLAAGATAGDVVLTMGAGDV 473


>gi|157412360|ref|YP_001483226.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157386935|gb|ABV49640.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 468

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 139/390 (35%), Gaps = 44/390 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + A L    T  A+ GS GKT+T   L+  L       + I      I        
Sbjct: 104 HRSEILAMLMETYTAFAVAGSHGKTSTSTFLSTILELCTHDSSSITGGIIPIYNSNCHLE 163

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + E+  S  G I    +  +  I +I  I   H  +FS + E+ S+     +
Sbjct: 164 ---NTKYLVAEVDESD-GTI----NQYKSDIGIINNIDFDHCDHFSDLNEVISSFRSFAK 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K   + LN+D           +     + +S   +KN  + +   +  S+ +  +  
Sbjct: 216 NSKK---LLLNFDCETSR------NNFFSNSKWSNTTTKNVAYAIIPTQINSKYTIGKYY 266

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G  +  +     G H   N+   +    ++  D     + +      + R + +R  +
Sbjct: 267 EHGNFVSNLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKRNIKYLKLPKKRFE-FRGQI 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSF 388
           N+    L+ + Y  +P  +K  I +          +   + R IA+           + F
Sbjct: 326 NE---RLLYDDYAHHPNEIKETIKLGKLFIKQKNNNEFQKSRLIAIF--QPHRYSRVKQF 380

Query: 389 HIDLAEVLSLYNISHV---WLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQ 438
             + AE LS  ++ +V   + +G           + D +  ++ +V Y      +     
Sbjct: 381 TREFAEELSKADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCYINNYHKITENFY 440

Query: 439 SSLVDGDVVVVKSSNSCG-FYRLINLLLEE 467
                GD+++   +  C  F+ +   L E+
Sbjct: 441 ELTQKGDLILNMGAGDCHDFWSI---LKEK 467


>gi|126663236|ref|ZP_01734234.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteria bacterium
           BAL38]
 gi|126624894|gb|EAZ95584.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteria bacterium
           BAL38]
          Length = 448

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 61/381 (16%), Positives = 131/381 (34%), Gaps = 49/381 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLAR 155
           +  V   +       A+ G+ GKTTT  +L   L        A +G    +    L    
Sbjct: 100 RAEVLGIITKDTYCFAVAGTHGKTTTSSILGHVLFESGVDVTAFLGGIVENYNSNL---- 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +       + E        +      + P+++ +T++   HL  +     I  +  E   
Sbjct: 156 IGSGKTVTVVEADEFDRSFLH-----LHPNVSCVTSMDADHLDIYGDAASIEESFREFAA 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    +                L ++  Y+ G + +A+F  +  +  +     +V+
Sbjct: 211 KTSSDNLYVI--------------KGLPLEG-YTIGVNNDANFSAQNIRIENGFYVFDVK 255

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              + +E V     G+H   N L+ L +        +  I AL  F   +G  +R+   +
Sbjct: 256 TPSELIENVQFGLPGHHNLTNALLALAMAKSYGVSNENIIAALKSF---KGVRRRFSFQI 312

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +     ID+ Y  +P  + A    + ++ P+   + IA       +   ++ F    AE
Sbjct: 313 REENIVYIDD-YAHHPTEINAVHQAVRELYPNK--KIIAAF--QPHLFSRTKDFVDGFAE 367

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y    + + G +   L + +          + + L +  ++S  D D
Sbjct: 368 SLSQFDEVLLLEIYPARELPMEGVNSTWLLNKINNPNKKLV--SKEELLVAFKNS--DAD 423

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           V +   +   G   L+  + +
Sbjct: 424 VFITIGAGDIG--ELVKNIKK 442


>gi|331086157|ref|ZP_08335239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406316|gb|EGG85830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 450

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 113/354 (31%), Gaps = 45/354 (12%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K Y        +IG P T A +   +    + E+    L  I        P +
Sbjct: 125 ALLGEIMKAYRDSVFVVGNIGTPYTGASLEMKEDSVTVAEMSSFQLETIDTF----HPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +EE   AK EI +   +     LNY+D        K H      
Sbjct: 181 SAILNITPDHLNRHHTMEEYIQAKEEITKNQTEEDVCVLNYEDEVLRAFGEKLHT----Q 236

Query: 247 IYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  F   +  +    L   K        EV  + +        +G H  +N++    + +
Sbjct: 237 VLYFSSRRKLERGIYLEDGKIIYADGKPEVLCKVEE----LKLLGTHNYENVMAASAMAA 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                + +  + +  F        R      +      ++S   NP +   A+  ++   
Sbjct: 293 AYGVPLSSIRETIRNFGGVA---HRIEFVTEKEGVAYYNDSKGTNPDAAIKAVEAMN--- 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                R   ++G   +       +     E      + ++ L G     + +   R    
Sbjct: 347 -----RPTILIGGGYDKNSSYDEWIDSFGE-----KVRYLVLVGATKEKIAETARRKGFD 396

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +V  ++T +   +       +GD V++    +S             F  L+N L
Sbjct: 397 NVILADTFEEAVMESARLAREGDAVLLSPACASWGMFKNFEERGDKFKELVNHL 450


>gi|291550011|emb|CBL26273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           torques L2-14]
          Length = 457

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 120/360 (33%), Gaps = 56/360 (15%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K YA       +IG P T +A    +    + E+    L  I+      RP +
Sbjct: 131 SLLGEIMKNYAQSSFVVGNIGNPYTSIALQTREDSVIVAEMSSFQLETIQTF----RPKV 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +E    AK  I +   +  T  LNY+D   ++      +     
Sbjct: 187 SAILNITPDHLNRHHTMEAYIEAKENIAKNQTEKDTCVLNYEDDVTKVFGENVKS----K 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMTLGI 302
           +  F        ++ +     E   + + + G+   V H    + +G H  +N +   G+
Sbjct: 243 VLYFSSQ-----RILEEGIYLENGQIVLAMNGEKTPVCHVDELNILGTHNHENAMAAAGM 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +     VD   + L  F   E    R      +      ++S   NP +    I  +++
Sbjct: 298 AAAYGVPVDVIRRTLKEFQGVE---HRIEYVAEKNGVVYYNDSKGTNPDAAIKGIQAMNR 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +    G            G    S + +  +      +  + L G    A +D +  + 
Sbjct: 355 PTVLIGG------------GYDKDSAYDEWIDSFDG-KVKKLVLLG----ATRDKIAETA 397

Query: 423 HVHYSE------TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             H  E      T +  F     +   GD V++    +S             F  L+N L
Sbjct: 398 RAHGFEDIEMADTFEEAFAKCVENAKPGDAVLLSPACASWGMFKNYEERGDKFKELVNNL 457


>gi|39936594|ref|NP_948870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris CGA009]
 gi|62900683|sp|Q6N409|MURD_RHOPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39650450|emb|CAE28973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rhodopseudomonas
           palustris CGA009]
          Length = 469

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 24/248 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L          G+    I         P D    + 
Sbjct: 112 PRAPFVAITGTNGKSTTTALIAHLLREAGWDTQLGGNIGTAILS----LEPPKDGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTSII 223

Query: 226 NYDDSFFELLKAKSHALGIKTI-------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             DD F      +    G + +        +FG + + D      ++    +  EV   G
Sbjct: 224 GVDDEFGRAAADRIERAGKRVVRMSVQGPVTFGITADLD----SIRRVDGGTSTEVAKLG 279

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQG 337
                +    G H AQN       V  L    +   + L  F     R ++  R    QG
Sbjct: 280 G----IGSLRGLHNAQNAAAAAAAVLALGVSPEVLQQGLRSFPGLAHRMEQVGRQVGEQG 335

Query: 338 FFTLIDES 345
               +++S
Sbjct: 336 TTLFVNDS 343


>gi|110634359|ref|YP_674567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           sp. BNC1]
 gi|118595664|sp|Q11GS3|MURD_MESSB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110285343|gb|ABG63402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chelativorans sp.
           BNC1]
          Length = 467

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 120/368 (32%), Gaps = 52/368 (14%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + V+    A    +  + +  R R    + A ++AITG+ GK+TT  +    L +  +
Sbjct: 82  PHWSVELARSAGVEIIGDIELFVRERRMHAAHAPLVAITGTNGKSTTTALTAHVLKAAGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    IG  +     PV     + E     +     L+  + P   V+  I P 
Sbjct: 142 DTQMGGN----IGRAVMTLDPPVADRHYVLECSSYQID----LSPTLNPTAGVLLNITPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKS 253
           HL     +E  A+ K  +  G   + T  +  DD +   +  +    G K   I   G  
Sbjct: 194 HLDRHGTMENYAAIKERLVAG---SDTAIIGVDDEYCRAVADRLEKAGRKVSRISLTGTL 250

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++  F        ++ + +    QGK     S+E +    G H AQN L           
Sbjct: 251 EDGFF--------ADGTQLFRAGQGKAEPLFSLEGIGSLRGRHNAQNALAAAAACLACGL 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                      F    G   R       G    +++S   N  +   A+S   +I     
Sbjct: 303 SPAEIQTG---FRSFPGLAHRMEQVGKLGHVLFVNDSKATNADASAPALSSFPRIYWIAG 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G   A  G +  + +                 I+  +L G    A    +  + +   S 
Sbjct: 360 GLPKA--GGIASLRQYFPR-------------IAKAYLIGEAAPAFAATIGEATNYEISG 404

Query: 429 TMDGLFLF 436
           T+      
Sbjct: 405 TIAAAVQH 412


>gi|316933184|ref|YP_004108166.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
 gi|315600898|gb|ADU43433.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
          Length = 465

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L          G+    I         P D    + 
Sbjct: 112 PRAPFVAITGTNGKSTTTALIAHLLREAGWDTQLGGNIGTAILS----LEPPKDGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTI-------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             DD F      +    G + +        + G + + D      ++  E +  EV   G
Sbjct: 224 GVDDEFGRAAADRIERAGNRVVRMSVQGPVTSGITADLD----AIRRVEEGASAEVAKLG 279

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +    G H AQN       V  L    +   + L  F    G   R      QG 
Sbjct: 280 G----IGSLRGLHNAQNAAAAAAAVLALGVSPEQLQQGLRSF---PGLAHRMEQVGRQGT 332

Query: 339 FTLIDES 345
              +++S
Sbjct: 333 TLFVNDS 339


>gi|282851650|ref|ZP_06261015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
 gi|282557618|gb|EFB63215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
          Length = 446

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 119/354 (33%), Gaps = 44/354 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S+A  + +TGS GKTTT  +        LS        +G+    I   +  A    D D
Sbjct: 97  SEAPYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKAT---DKD 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKT 220
             + E+    L         ++P +A I  I    HL      +    AK  I +  ++ 
Sbjct: 154 LLVVEMSSFQLLG----VTDIKPKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQN 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRK--WKQCSEQSWMEVQLQ 277
                N+D    + +  +        + +F +  K AD+ +     +   +   M++   
Sbjct: 210 DYFIANFDQ---KNILDRELKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIMKIS-- 264

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H  QN L+ + I  ++ AD      ALS F    G   R +  +   
Sbjct: 265 ------DIKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFT---GATHRLQYVMTYN 315

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              + ++S + N  +   AI    +         IA        G L + F  D    L 
Sbjct: 316 DRKIYNDSKSTNIEAATVAIPSFKEPEV-----LIA--------GGLDRGFMFDSLVPLF 362

Query: 398 LYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 363 KKYVKSIVLYGETKYLLADAARKAGIKDIVIVNTLQEAVPRAYELSEAGDVILF 416


>gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 831

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 125/383 (32%), Gaps = 54/383 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------- 155
           +  ++A+TG+ GKTTT  ++   ++          +   +I      +            
Sbjct: 444 RIPVVAVTGTNGKTTTVRLIAHLMTQTGLRVGMTNTDGVYIRGRRIDSGDCSGPRSARNV 503

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKA 211
            +  DVD  +FE   +  G +R      R  +AV+T I    HL     + +E++A  K 
Sbjct: 504 LLHPDVDAAVFE--TARGGVLREGLAFDRCQVAVVTNIGTGDHLGLNYITTVEDLAVLKR 561

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I + +  TG   LN  D     +          ++  FG  +          Q     +
Sbjct: 562 VIVQNVSDTGVAVLNATDPIVARMAGNCSG----SVTFFGSDRRHPVMATHRAQGRRVVF 617

Query: 272 ME----VQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           ++    V  +GK         + +   G      +N++ ++     L  D D     L  
Sbjct: 618 IDDDMLVAAEGKTEYRIALSEIPITRGGAIGFQVENVMASVAAGWALDLDWDVMRSGLKS 677

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F              +    TLI + Y  NP ++ A +  +  +    + R + + G   
Sbjct: 678 FANDSDNAPGRFNVFDYRGATLIAD-YGHNPDAILALVQAVECLPA--KRRSVVISG--- 731

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSET 429
             G+          E+L       V L           G  V  L+  L  +      + 
Sbjct: 732 -AGDRRDEDIRQQTEILG-AAFDDVLLYQDQCQRGRADGEVVALLRAGLAGASRTTVIDE 789

Query: 430 MDG---LFLFIQSSLVDGDVVVV 449
           + G           L  GD+ ++
Sbjct: 790 IRGEFLAIDTALERLSPGDLCLI 812


>gi|332534480|ref|ZP_08410317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036048|gb|EGI72525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 451

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 148/409 (36%), Gaps = 33/409 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +   L   + ++A+ G+ GKTTT  ML  
Sbjct: 64  MVVIGNAMSRGNPCVEYVLDKGLPYTSGPEWLKHNLLQDSWVLAVAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + GV   +   P    F + E            +  V   P 
Sbjct: 124 VLEYAGLKPGFLIGGIVQNFGVSAKVGETP----FFVIEADEYDTAFFDKRSKFVHYLPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   L ++G +     D     + A+       
Sbjct: 180 TLILNNLEFDHADIFEDLNAIKKQFHHLMRTLPQSGKVIWPKQDVALNDVIAQG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            ++S  ++   D+     K  ++ S   V L G+    V    IG H  +N +MT+    
Sbjct: 234 -LWSDSETLGDDWSYELIK--ADGSEFNVLLNGEKQGTVCWQAIGEHNVKNAIMTIAAAR 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +   +D +I AL  F   +   +R     +     + D+ +  +P ++K  ++ L   +
Sbjct: 291 HVGIAIDHSIDALGEFISPK---RRMELKADINNIKVYDD-FAHHPTAIKTTLAGLR--A 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSI 422
             G+ + IA+L       ++    H  L    SL +   V L     L  +LK+   ++ 
Sbjct: 345 KVGDEKIIAILEPRSNTMKMGVHQHTLLD---SLRDADEVLLFEPENLNWSLKEQADKAG 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS--CGFYR-LINLLLEEF 468
            +    +   +   +  ++     +++  SN    G ++ L++ L +++
Sbjct: 402 -MQCFNSTQTIIDTVLENIEPNQHILIM-SNGGFNGLHQHLVDGLADKY 448


>gi|283456395|ref|YP_003360959.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium dentium Bd1]
 gi|283103029|gb|ADB10135.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium dentium Bd1]
          Length = 521

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 121/369 (32%), Gaps = 45/369 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV ++ +      +       + ++   ++  + A L      + + G+ GKTTT 
Sbjct: 88  GARTVVFSSAIKPDNPEIVAAYEAGERIV---HRSDILALLMQSKRAVTVAGAHGKTTTS 144

Query: 124 EMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            ML   L +         +YA  GS     G  L            + E   S     ++
Sbjct: 145 SMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGS-VLVAEADESDGSFAKY 203

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P IA+IT     HL ++    +  +A  E          + +  DD     +  
Sbjct: 204 -----HPEIAIITNAEADHLDHYGTEAKYRAAFVE--HAGCAGKAVIMCGDDDGALAVLR 256

Query: 238 KSHALGIKTIYSFGKSKNADFQLRK------WKQCSEQS-----WMEVQLQG-------K 279
                  + +  +    + D            +  SE +        + L         +
Sbjct: 257 ALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESTQSGAEHFILHLPAGLVDVEER 316

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G H A+N    L    +L  DV+ A  A + F    G  +R++   +    
Sbjct: 317 RVPVTLTVPGIHNARNATAALLAAVMLGVDVERAAAAATSFL---GAARRFQIRGSVNQV 373

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID+ Y  +P  + A +    +  P      I        +   +  F  + AE L+  
Sbjct: 374 TVIDD-YAHHPTEIAALLDAARRRYPEAGIHVIF----QPHLFSRTMFFAREFAEALAK- 427

Query: 400 NISHVWLSG 408
               V ++G
Sbjct: 428 -ADDVIVTG 435


>gi|328676597|gb|AEB27467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella cf. novicida
           Fx1]
          Length = 456

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAI G+ GKTTT  +    L                +     ++    D ++ + E 
Sbjct: 105 KKVIAIAGTHGKTTTTTITIKILEQAGLN---PSFLVGGVSSDFGVSSRYTDSEYFVIEA 161

Query: 168 GMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      + L+   P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVV 284
           N  D   + + +      +  +       N+D  +   K   + S  E+  + G S+EV 
Sbjct: 222 NAKDDNVQKIISMGCWSELVKV-------NSDLGISITKHTLDYSKFELCDINGNSVEVS 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H A N +    +   L    +    AL  F   +   +R     +Q   TL D+
Sbjct: 275 WGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVK---RRLEVLSHQDNITLYDD 331

Query: 345 SYNANPASMKAAISVLSQ 362
            +  +P S+K  +  +  
Sbjct: 332 -FAHHPTSIKLTLEAVRN 348


>gi|315653712|ref|ZP_07906632.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
 gi|315489074|gb|EFU78716.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
          Length = 460

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 128/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F  +S  AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLTKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  ++ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKLMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           kluyveri DSM 555]
 gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016]
 gi|189082874|sp|A5N4L3|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766045|sp|B9DY75|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555]
 gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 458

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 93/256 (36%), Gaps = 21/256 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I  +TGS GKTTT  ++   L          G+    +     +  +  D D  + E
Sbjct: 116 PAKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPLFSE--VEEITPD-DRVVIE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +T  + P +AVIT ++P HL     +EE   AK  IF+    +  + LN
Sbjct: 173 LSSFQL-----MTMNISPEVAVITNVSPNHLDIHKDMEEYIMAKKNIFKYQSNSDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+     +  +  ALG    +S  +  N    L K   C +   +              
Sbjct: 228 KDNELTNSMTGE--ALGKVRQFSIKEKLNKGGYLNKDSLCIDGDEV-------CKLSEIK 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L           ++++  +  + F   E R +  R           ++S 
Sbjct: 279 LKGMHNVENLLAAF-CALKDDVNIESMREIATTFSGVEHRCEFVREI---NGVKYYNDSI 334

Query: 347 NANPASMKAAISVLSQ 362
            ++P    A +    +
Sbjct: 335 ASSPTRTLAGLKAFEK 350


>gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
 gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
          Length = 470

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 61/457 (13%), Positives = 138/457 (30%), Gaps = 43/457 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            + +G +  I+ D + +     F+A        H  I  A+ +GA  ++ N         
Sbjct: 11  EISKGRIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGAKSILTNQKYE-ECLE 66

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +  F         + +      +    + AI G+ G+ +     +   +   K    +
Sbjct: 67  QGVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGRKSVGHFFSQVCTLAGKKAVTL 126

Query: 141 GSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              N  +  P                  +     +       L +S       +   V  
Sbjct: 127 SVSNEPMDTPKLWQEKDHLISDAADMYNILDDLAERRIEYCCLAISAAAIESRMIDSVNL 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  T +    L     ++     K  +  E L + G + L     +   +        
Sbjct: 187 KAAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEILPENGIMVLPVASEYTTRIMQHCPN-- 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K + ++G++  +D QL       +   + +++ GK M V  + +G     N++  +G+ 
Sbjct: 245 -KKVCTYGRA-TSDIQLISQLPTQKGQILTMKILGKEMVVHTNILGKFQGNNLVTAMGLA 302

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D  +              G             ++ +     P+ +     +L  I
Sbjct: 303 ISCGIDPSSIEHE----QISPLAGYMEFLEDYGEERKIMTDC-AQTPSELH---DLLLSI 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
             H     + ++    E  E   +    +A++ +      ++ S  H   L +   R + 
Sbjct: 355 KWHFPYNDVTLVLRCSENYEARNTL--KMAKIAAKMVNRIIFTSDSHGSMLTEKTRRELM 412

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVV---VKSS 452
                    E       +  ++    +++V   VKSS
Sbjct: 413 SCCPKAIEIEDRKKAMEYAINNCKPSEIIVMQGVKSS 449


>gi|188587819|ref|YP_001919625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|226711898|sp|B2UXV7|MURD_CLOBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188498100|gb|ACD51236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 458

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 130/388 (33%), Gaps = 75/388 (19%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA I  ITGS GKTTT  +++  L          G+    +   +   +     D  + E
Sbjct: 116 KAKIYGITGSDGKTTTTTIISKILQEEGYKTWVGGNIGTPLFAQIEEIKAE---DRVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +T  +   IAV T +AP HL     ++E   AK  IF     T T+ +N
Sbjct: 173 LSSFQL-----MTMNLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIFLYQGSTNTLVVN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW---KQCSEQSWME---VQLQGKS 280
            ++                   ++G    A  ++R++   ++  E ++ +   + L GK 
Sbjct: 228 RENE-----------------ITYGFEAEAKGEVREFSSKREVKEGAYYKDGILYLSGKE 270

Query: 281 MEVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +    + +  G H  +N L    I +     ++   K    F+  E    R         
Sbjct: 271 VCKKDNIVIKGMHNVENYLAAF-IATKDDVSIENMKKVAESFNGVE---HRCELVREING 326

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S  ++P    A +    +       + I + G     G         LA     
Sbjct: 327 VKYYNDSIASSPNRTLAGLKAFDK-------KVILIAG-----GYDKHLLFEPLANEGYP 374

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV---- 447
           Y I  + L G     +KD            I++    T++      Q     GD++    
Sbjct: 375 Y-IKELILLGQTKEKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQDLAKQGDIITLSP 433

Query: 448 -----------VVKSSNSCGFYRLINLL 464
                      ++       F  ++N L
Sbjct: 434 ACASFDMFPNFMI---RGNKFKEIVNEL 458


>gi|327404198|ref|YP_004345036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
 gi|327319706|gb|AEA44198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
          Length = 447

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 111/361 (30%), Gaps = 34/361 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  ++++  A    +   +  ITGS GKTTT  ++   L          G+        +
Sbjct: 91  IKVISEIEFAGYFTTAKKVC-ITGSNGKTTTTMLIHHMLKKAGLKVGLAGNVGYSFAKQV 149

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAK 210
            L     D +  + EL    L ++       +  IA++T I P HL  +   ++   ++K
Sbjct: 150 AL----EDNEIYVLELSSFQLDDMEDF----KAEIAILTNITPDHLDRYEYNMQLYVNSK 201

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQ 269
             I            N DD        K      K  +S  +  +   +   K    +  
Sbjct: 202 FRILNNQTAGDYFIYNADDKTILAELEKRSISAQKLPFSLTQEFEQGAYTANKQLIINFN 261

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   + +            G H  QN L +     IL    D   ++LS F   E    R
Sbjct: 262 NQFTMSI------HELALKGKHNTQNSLASGLAGRILDIRKDIVRESLSDFVNVE---HR 312

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  S   A+  + Q +    G            G    + +
Sbjct: 313 LEFVAKVCGIEFINDSKATNINSTWFALESMEQPTIWIVG------------GVDKGNDY 360

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVV 448
            +L E++    +  +   G     + D     +              +        + V+
Sbjct: 361 SELVELVKE-KVKAIICLGKDNQKIIDTFSGHVETIVEAGSAMEAVAYGYRLAKKDETVL 419

Query: 449 V 449
           +
Sbjct: 420 L 420


>gi|259501649|ref|ZP_05744551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|302191144|ref|ZP_07267398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           iners AB-1]
 gi|309803217|ref|ZP_07697314.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|312871630|ref|ZP_07731722.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
 gi|312873235|ref|ZP_07733291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|259166934|gb|EEW51429.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|308164725|gb|EFO66975.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|311091246|gb|EFQ49634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092855|gb|EFQ51207.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
          Length = 460

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 128/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +    +        +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F  +S  AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLTKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|255027424|ref|ZP_05299410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-003]
          Length = 420

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 31/296 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +      ++ +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTTDDSLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDE---- 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              + G+         G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 267 ---VIGER--DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +    N+  + + G     +        I VHY + ++            GD++
Sbjct: 367 --LPFFKNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDII 420


>gi|116491164|ref|YP_810708.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
 gi|122276654|sp|Q04ES9|MURD_OENOB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116091889|gb|ABJ57043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
          Length = 438

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 129/384 (33%), Gaps = 54/384 (14%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            +++    +L+IPV    +V  AL         + K  ++A+TGS GKTTT  ++   L 
Sbjct: 72  KEIIKKALNLNIPVIT--EVQVAL--------DQFKGEVLAVTGSNGKTTTTTLIGKMLK 121

Query: 132 SIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        G+    IG+P++   +        + EL    L         ++P IAVIT
Sbjct: 122 ADNVDVKVGGN----IGIPVSELMLSDSQPRVLMLELSSFQLLG----AQNIKPKIAVIT 173

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  +H+           AK  I +   K   + LN      +    +S A         
Sbjct: 174 NLFSSHIDFHHTRGNYLRAKFSITQHQTKDDYLVLNDSSIDSKDFAKRSQA--------- 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTA 308
               +  F        +  +   +    + +  +     +G H  +N+L  +    I   
Sbjct: 225 ---DDYYFSPTNTSVNTYVNDGTIYFDDEKIIDLSKVVLVGEHNLENILAAVTAAKIFGV 281

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                     V    +G   R          T+ ++S   +  + + A++   +      
Sbjct: 282 SNRAI---EKVLTSFKGLEHRLEAVGVIKERTVYNDSKATDIEATQKALASFKE------ 332

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRS--IHVH 425
              I ++    + G+       DL  ++ +  N+  +   G     L+ A  ++      
Sbjct: 333 --PINLIAGGLDRGD-------DLNRLVPNFKNVVSLITYGQTKNKLQSAGEKAGIKQTV 383

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
             +T+       +     G V++ 
Sbjct: 384 VVDTLKEAVAKAKELSRPGQVLLF 407


>gi|325264801|ref|ZP_08131530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
 gi|324030093|gb|EGB91379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
          Length = 453

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 136/381 (35%), Gaps = 50/381 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A +  K  ++AITG+ GKTTT  +L   + + +++   +G+  N      ++A    D  
Sbjct: 105 AYVTGKGDVLAITGTNGKTTTTALLGEIMKNYRESTFVVGNIGNPYT---SIALATRDDS 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I    H  RP ++ I  ++P HL+    +E    AK  I E   +  
Sbjct: 162 VIVAEMSSFQLESI----HTFRPKVSAILNVSPDHLNRHHTMEAYIDAKLNIAENQTEED 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLR--KWKQCSEQSWMEVQLQ 277
           T  LNY+D        K +A     +  F   +  +    +         +++ ++V   
Sbjct: 218 TCVLNYEDEMTRGFAEKVNA----KVLYFSSQRKLEKGIYMEDGNIICRMDETPVKVCHI 273

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +        +G H  +N++   G+ +     ++   + +  F   E    R      + 
Sbjct: 274 DE-----LKLLGTHNHENVMAAAGMAAAYGVPMEIIQRTVKEFQGVE---HRIEFVAEKD 325

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +    I  +         R   ++G     G   +S + +  +   
Sbjct: 326 GVAYYNDSKGTNPDAAIKGIQAMK--------RPTLLIGG----GYDKESSYDEWIQAFD 373

Query: 398 LYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
              +  + L G     +K+   R     +  ++T +            GD V++    +S
Sbjct: 374 G-KVKKLVLLGATKEKIKETAERLGFRDIILTDTFEEAVDTCVKYARPGDAVLLSPACAS 432

Query: 453 ---------NSCGFYRLINLL 464
                        F  L+N L
Sbjct: 433 WGMFKNYEERGDKFKELVNQL 453


>gi|189183580|ref|YP_001937365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189180351|dbj|BAG40131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 472

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 133/392 (33%), Gaps = 52/392 (13%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI+  +  G         ++      +IP+    D+L                  I IT
Sbjct: 71  DFII--LSPGIPYYTTPHPIIKHAQKYNIPIKSDIDLL---------YNEYPNRKYIGIT 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GK+TT  ++   L+     +   G+          +  +  +V+  + EL    L  
Sbjct: 120 GTNGKSTTSTLIHHILTLTNGKFDLGGNIGK------AVLSLRNNVEGYVLELSSFQLDL 173

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL--------- 225
           I  L    +  IAV+  I   H+  +   ++   +K +I     K G   +         
Sbjct: 174 ITDL----KLDIAVLLNITADHIDRYYSFDQYILSKQKILSLATKNGYALISKECSIISN 229

Query: 226 -NYDDSFFELLKAKSHALGI--KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            NY+  +    +  + +L +  K I +   +K+   +    +           L  + + 
Sbjct: 230 ANYNTLYASKFRNTTCSLELIKKAINTDELNKSIADESINCQSQPTLVKFSSHLP-QHIN 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  QN+        IL  +      A++ F P      R +    +    + 
Sbjct: 289 FTSLLLGKHNNQNIAAAFYACKILGRNEYDITSAINQFQPLP---HRMQYIGKKNNIHIY 345

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+  LS I     G  +A      E G  S         V +LY + 
Sbjct: 346 NDSKATNADAASKALLSLSNIYWIAGG--VA-----KEGGVNS--------IVNTLYEVK 390

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
             +L G    AL + L   +    + TM+  F
Sbjct: 391 KAYLYGQSRYALAETLKGVVAFSINNTMEEAF 422


>gi|168205550|ref|ZP_02631555.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
 gi|170662912|gb|EDT15595.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
          Length = 874

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 132/378 (34%), Gaps = 43/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------IGSYNNH--IGVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C       IG+   H         AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     K  +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKLGNPIVF 649

Query: 272 ME-----VQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGVNVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                M E+G +S  F   +   E   L       ++      +  A  + ++V    + 
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSANRKDLNVKIILSE 827

Query: 431 DGLFLFIQSSLVDGDVVV 448
           +            G+ ++
Sbjct: 828 EEALRETLKLAKKGETII 845


>gi|298207883|ref|YP_003716062.1| UDP-N-acetylmuramate--L-alanine ligase [Croceibacter atlanticus
           HTCC2559]
 gi|83850524|gb|EAP88392.1| UDP-N-acetylmuramate--L-alanine ligase [Croceibacter atlanticus
           HTCC2559]
          Length = 451

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 135/376 (35%), Gaps = 47/376 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           +  V   +      +A+ G+ GKTTT  +L   L        A +G  + +         
Sbjct: 102 RAEVLGDVTKNQNTLAVAGTHGKTTTTSILAHLLKDSGLNITAFLGGVSENYNTNF---- 157

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +   +D  + E        +      + P+   IT++   HL  +   EE++       +
Sbjct: 158 INDGLDAIVVEADEFDRSFMH-----LSPNKIAITSMDADHLDIYGSAEELSHTFKGFAD 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            ++    +FL             +  L +K I S     NAD                ++
Sbjct: 213 LVKDKSNVFL-------------AKGLPLKGI-SISVDGNADITAEDITIKDGSYRFNLR 258

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           LQ   ++    +  G H  QN +  L + +   +  ++  KAL+ F   +G  +R+   +
Sbjct: 259 LQDNIIKGFEFNLPGKHNLQNAVTALALAAPFVSPSNSLTKALASF---KGVQRRFTYRI 315

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T+ID+ Y  +P+ + A    + ++ P+   + +AV      +   ++ F  + AE
Sbjct: 316 KSEKLTIIDD-YAHHPSEINAVNQAVREMHPNK--KVLAVF--QPHLFSRTRDFINEFAE 370

Query: 395 ---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                    +L +Y      + G    AL   +         +    L   ++++    +
Sbjct: 371 SLSKFDSVVLLDIYPAREEPIDGITSQALLKLIANPNKKIIGKV--DLIKEVKAT--SAE 426

Query: 446 VVVVKSSNSCGFYRLI 461
           VV +  +   G   ++
Sbjct: 427 VVAMMGAGDIG-EEIL 441


>gi|168215842|ref|ZP_02641467.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
 gi|182381983|gb|EDT79462.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
          Length = 874

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 132/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------IGSYNNH--IGVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C       IG+   H         AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     K  +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKLGNPIVF 649

Query: 272 ME-----VQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGVNVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 144

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    +    +
Sbjct: 15  DPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDV 74

Query: 84  PVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +             ++ +TG+ GKT+  +++  AL ++ +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134

Query: 142 SYNNHIGVP 150
           +        
Sbjct: 135 TLGTGFYGA 143


>gi|224282642|ref|ZP_03645964.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313139800|ref|ZP_07801993.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132310|gb|EFR49927.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 529

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 148/451 (32%), Gaps = 73/451 (16%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  VV ++ +      +   V   +  +  +++  + A L +    + + G+ GKTTT
Sbjct: 87  RGADTVVYSSAIKPDNPEI---VAAHERGIRIVHRSDILALLMNGRRAVTVAGAHGKTTT 143

Query: 123 KEMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             +L+  L           +YA  G+     G  L         D  + E   S     +
Sbjct: 144 SSLLSHILVHAGTGELADPSYAIGGTIQAPGGAVLDGGHAGRG-DVLVAEADESDGSFCK 202

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELL 235
           +     RP IAVIT     HL ++       +A  +       +G + +  DD     +L
Sbjct: 203 Y-----RPSIAVITNALADHLDHYGDEAHYCAAFID--HAGHASGHVVMTGDDEGAVAVL 255

Query: 236 KAKSHALGIKTIYSFGKSKN--ADFQ--------LRKWKQCSEQSWMEVQLQ-------- 277
           +    ++  +TI    K  +   D +               S +    V +         
Sbjct: 256 RDLDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFTVHVPASLASVCG 315

Query: 278 ----GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                 ++ V     G H A+N    +    +L    + A +A S F    G  +R++  
Sbjct: 316 CGDADLALPVSLAIPGMHNARNATAAILAAMLLGVTPEAAAQAASTFL---GASRRFQVR 372

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +   T++D+ Y  +P  + A +    +  P    R   VL     +   ++ F  + A
Sbjct: 373 GEENGVTVVDD-YAHHPTEISALLDAARRRYPRSVIR---VLFQ-PHLFSRTRMFVHEFA 427

Query: 394 EVLSLYNISHVWLSG-------------FHVLALKDALPRSIH---------VHYSETMD 431
           E LS      V ++G                + + DA     H         +   + M 
Sbjct: 428 EALSK--ADDVIVTGIFPARELQRDFPDVSAMTIVDAAQDVPHASAQGDGTWISAVDDMQ 485

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC-GFYRLI 461
                +       DVV    +        +I
Sbjct: 486 VAAQMLAMRCRPTDVVFTVGAGDITAMGAVI 516


>gi|182626262|ref|ZP_02954019.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908441|gb|EDT70979.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
          Length = 874

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C  +    I               AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNKYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     K  +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKLGNPIVF 649

Query: 272 ME-----VQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGVNVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|110801078|ref|YP_696891.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
 gi|110675725|gb|ABG84712.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
          Length = 874

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 130/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C  +    I               AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNKYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     K  +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKHGNPIVF 649

Query: 272 M---EVQLQGKSMEVVH----------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                + ++ +S E             +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGINVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|329922717|ref|ZP_08278269.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
 gi|328942059|gb|EGG38342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
          Length = 356

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 108/353 (30%), Gaps = 45/353 (12%)

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT   +   L S   +    G+    +      A    + D+ + EL    L     
Sbjct: 1   GKTTTTTWVGEMLESAGLSPIVAGNIGTPLSEAAATAT---ENDWMVVELSSFQLKG--- 54

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T   RP IA +  +   HL    G+++  ++KA++F       T  LN+DD     L  
Sbjct: 55  -TEAFRPRIACLLNVTETHLDYHGGMDDYVASKAKLFANQTSEDTAVLNWDDPVCRNLVP 113

Query: 238 KSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQGKSMEV------VH 285
              A  +    S    +            +   +  +   + +   G+            
Sbjct: 114 YIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDDQGRRI-IYTDGEGFTHEIIRVENI 172

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N +    I        D   +ALS F   E    R          +  + S
Sbjct: 173 GLPGRFNVGNAMAACAIAIAAGVAPDKLEEALSSFRGVE---HRLEFVAELQGVSYYNNS 229

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A++   +         + + G   + G   +     +        +  V 
Sbjct: 230 KATNSKATHMALTSFKE-------PVVLIAGG-LDRGSDYEELIPSM-----QGRVKAVV 276

Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVD-------GDVVVV 449
           L G     + +A  ++    +   +  +     + S++         GD+V++
Sbjct: 277 LLGETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESGDIVLL 329


>gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
 gi|118595693|sp|Q1GIV4|MURD_SILST RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|99036800|gb|ABF63412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
          Length = 467

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 108/355 (30%), Gaps = 36/355 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                +   +IA+TGS GK+TT  +L   L  + +     G+    +         PVD 
Sbjct: 113 WDEFDTAPKVIAVTGSNGKSTTVALLHHILEHVGRNSQMAGNIGRGVLDIDP----PVDG 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL        R LT    P +AV T + P HL   +G+    +AK  +F      
Sbjct: 169 GVVVLELSSYQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPD 224

Query: 221 GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +  D+     L  + S       +      +        W   + + ++    +G+
Sbjct: 225 -RAVIGVDEDEGLFLAGQLSEGESDDRVIRISARQKLSGGA-GWTVFARKGFLSEYRKGR 282

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +  +    G H  QN          L         A+  +     R +R     
Sbjct: 283 QAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMRTYPGLPHRSQRI---A 339

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                + +++S   N  S   A+S    I     G          E G  +         
Sbjct: 340 EADGVSYVNDSKATNVDSAAKALSAFKNIRWICGGLE-------KEGGLEALKG------ 386

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  ++   ++ G        A+   +      TM        +    G+ V++
Sbjct: 387 --ATDDVLKAYVIGREAAQF--AMQLDVEAEVCTTMAQAVSRAMAEAGPGETVLL 437


>gi|309388991|gb|ADO76871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium
           praevalens DSM 2228]
          Length = 449

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 138/373 (36%), Gaps = 36/373 (9%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYA 138
            L I V      +  ++++  A R +S+A IIAITG+ GKTTT EML   L+ +  +   
Sbjct: 81  DLDILVQARKKGIETISEIEFAFR-QSQAEIIAITGTNGKTTTTEMLAAMLADLEAENIK 139

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+        ++L     + +  I EL    L          +  IA+    +P HL 
Sbjct: 140 AAGNIGIPF---ISLIDQLKEKERVILELSSFQL----EAVKDFKAKIALYLNYSPDHLD 192

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNAD 257
                +   +AKA IF+  + +    ++ DD +   LK K  A     + +   K++ AD
Sbjct: 193 RHQTEKNYQAAKANIFKNQQPSDFAIIDLDDPYLSELKNKLEA----KVLTISAKNEKAD 248

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             ++      ++  +++    K      + +G H  +N         +     +    A 
Sbjct: 249 LIIQDNIAYYQKEKLKLLDLSK-----INLLGKHNQKNAAFAALAAYLAGQKPEKIQLAA 303

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             +  K     R     N+    +I++S   NP S   AI+ L +         I + G 
Sbjct: 304 QNYKLKA---HRMEVIANKNNKLIINDSKATNPDSTLKAINSLEK-------DIILIAGG 353

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLF 436
                + S      + +      +  + L G +   L +  L   + +   ETM      
Sbjct: 354 QDRKADFS------VLKSEIEKKVKTLILLGENKKQLANIFLDSKLKIIEVETMKTAVTE 407

Query: 437 IQSSLVDGDVVVV 449
               L    V+++
Sbjct: 408 ALKHLDSNSVLLL 420


>gi|167038683|ref|YP_001661668.1| hypothetical protein Teth514_0008 [Thermoanaerobacter sp. X514]
 gi|289577273|ref|YP_003475900.1| hypothetical protein Thit_0008 [Thermoanaerobacter italicus Ab9]
 gi|300913757|ref|ZP_07131074.1| protein of unknown function DUF1727 [Thermoanaerobacter sp. X561]
 gi|307723226|ref|YP_003902977.1| hypothetical protein Thet_0008 [Thermoanaerobacter sp. X513]
 gi|166852923|gb|ABY91332.1| domain of unknown function DUF1727 [Thermoanaerobacter sp. X514]
 gi|289526986|gb|ADD01338.1| domain of unknown function DUF1727 [Thermoanaerobacter italicus
           Ab9]
 gi|300890442|gb|EFK85587.1| protein of unknown function DUF1727 [Thermoanaerobacter sp. X561]
 gi|307580287|gb|ADN53686.1| domain of unknown function DUF1727 [Thermoanaerobacter sp. X513]
          Length = 446

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 132/393 (33%), Gaps = 78/393 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + ITG+ GKTTT  ++   L++  K         N   G+   L +    +     E  +
Sbjct: 51  VMITGTNGKTTTSGLIAHILNTAGKSVVHNKEGANMKTGIATALIKSSDFLGNLKKEAAV 110

Query: 170 SHLGE--IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             + E  +  +   + P+I +IT      L  +  ++            L +   I LN 
Sbjct: 111 FEVDEANMPIVIEDINPNIVIITNFFRDQLDRYGELDITVEKVKNALLKLPQESIILLNA 170

Query: 228 DDSF----FELLKAKSHALGI--------------------------KTIYSFG------ 251
           D+ F     + +K+K    GI                          + IY +G      
Sbjct: 171 DEPFTASIGDEIKSKVFYYGIDDNIEGINSSSFEQKYCPICGHKYEYRRIY-YGQLGDYY 229

Query: 252 ------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  N  F+        +     +  + K        IG +   N+L  +    +
Sbjct: 230 CPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKIFTFKSRLIGIYNVYNLLAAISASIL 289

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +T  KA   + P EGR ++ +    +    LI      NP   ++ +++LSQ S 
Sbjct: 290 LNIDFNTISKATENYWPIEGRLQKTKIKNKKAIINLIK-----NPIGFESTLNMLSQFSK 344

Query: 366 -----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                      + +GR ++ L D            ++L + LS   ++++  SG     +
Sbjct: 345 PLNLLISINDNYADGRDVSWLWD------------VNLEDFLSKTKVNYIITSGLRAEDM 392

Query: 415 KDALPRS----IHVHYSETMDGLFLFIQSSLVD 443
              L  +      V    ++D     I     +
Sbjct: 393 AVRLKYANFDINKVKVINSVDKALDTISELTKE 425


>gi|163790538|ref|ZP_02184967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
 gi|159874141|gb|EDP68216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
          Length = 461

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 106/331 (32%), Gaps = 40/331 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++ +       + N      L   +   D +  I EL    L  I  L    +P
Sbjct: 129 MIAELLNAERSKGQAYVAGNIGTPASLVAQKATKDDEI-IMELSSFQLMGITEL----KP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAVIT I  AHL      EE  +AK  I +   +   + LN+D      L  KS A   
Sbjct: 184 HIAVITNIYSAHLDYHGTREEYVAAKMTITKNQTEEDYLILNWDQPELRALSEKSKA--- 240

Query: 245 KTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTL 300
            TI  F + +  D    L+            +  QG+ +  +      G H  +N +  +
Sbjct: 241 -TIIPFSRKEILDNGVYLQDDV---------IYYQGEPVMAKETILVPGDHNVENAMAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L  +       L  F   +    R +           ++S   N  + + A+   
Sbjct: 291 AVAKLLNQENGAIRATLEKFTGVK---HRTQFVTEFEERRFYNDSKATNTLATENALKGF 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                      + +L    + G                  +  + + G     L +   +
Sbjct: 348 DV--------PVILLAGGLDRGNDFDDL-----IPAMSGKVKALIVFGETATKLAETGEK 394

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +   + ++             DV+++
Sbjct: 395 AGIPTIIDVQNVEAAVPVAYELSEAKDVILL 425


>gi|168213683|ref|ZP_02639308.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714862|gb|EDT27044.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
          Length = 874

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 130/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C  +    I               AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNKYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD +   +  +      K    F  ++N  +     K  +   +
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKHGNPIVF 649

Query: 272 M---EVQLQGKSMEVVH----------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                + ++ +S E             +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 QFKSCEEDNRGRFNMFDVNGINVILD--YGHNIDGYKVVIDSLKNLGLKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G +S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 610

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 100/268 (37%), Gaps = 23/268 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LLQ +     G     +V  I   S  + P + F AI G  +DG  F   A+++GA  VV
Sbjct: 8   LLQGLSFSLSGEPLPPWVGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGAR-VV 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
           V            +    V     AL++LA         +  ++ +TG+ GKTTT  +L 
Sbjct: 67  VAQQPPGQPLPPGVSWLQVPCARSALSRLAANRYGHPSRRLVVVGVTGTTGKTTTTLLLH 126

Query: 128 IALSSIKKTYACIGSY-----------NNHIGVPLTL---ARMPVDVDFGIFELGMSHLG 173
             LS+       IGS            N     PL L    R+  D    +  + +S  G
Sbjct: 127 HLLSATGIPAGLIGSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQG 186

Query: 174 EIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +     V   + V+T +AP  HL      E+ A+AK      +   G + ++  ++  
Sbjct: 187 ADQRRVDDVAFDLGVVTNLAPLEHLEYHPTYEDYAAAKGRFVAMIPPGGGVLMHEGEAAL 246

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQL 260
            L            +  FG+      +L
Sbjct: 247 RL-----GPYARAPVVLFGRGPACHLRL 269



 Score = 42.7 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H A N++  +G    L  D  T  +AL  F       +R    L +  FT+ID+
Sbjct: 353 TQLLGPHHALNVVAAVGAALWLGLDPGTVARALPGFAAP----RRRTQVLMRRPFTVIDD 408

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +    P S+ A  +V ++I         AV G
Sbjct: 409 T-AGRPDSLAACFAVAARIPHRRAVVVYAVRG 439


>gi|307826296|ref|ZP_07656503.1| UDP-N-acetylmuramate [Methylobacter tundripaludum SV96]
 gi|307732652|gb|EFO03522.1| UDP-N-acetylmuramate [Methylobacter tundripaludum SV96]
          Length = 450

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 122/378 (32%), Gaps = 28/378 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +A  +     ++ + G+ GKTTT  ML+ 
Sbjct: 64  LVIIGNALSRGNPEVEAVLNRGLRYVSGPQWLAEHVLQDKWVLGVAGTHGKTTTTSMLSW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHI 186
            L          G     I +   ++    + DF + E            +  V  RP  
Sbjct: 124 ILEHQGFN---PGFLIGGIPLNFGISARLGESDFFVIEADEYDSAFFDKRSKFVHYRPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +   H   F  ++ I      +   +   G I     D+    + A      +  
Sbjct: 181 AILNNLEYDHADIFPDLDAIKKQFHHLVRTVPGEGLIISPECDANINDVLAMGCWTPVAK 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSI 305
                 S N+D Q       S+ S   VQ+  +    V     G H   N L  +     
Sbjct: 241 -----TSINSDAQWNAQLINSDGSRFNVQMDNQEQGCVEWSLTGEHNVYNALSAIVAAKH 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +      AI AL  F   +   +R     +    T+ D+ +  +P +++  +  L +   
Sbjct: 296 VGILPKDAIAALGRFKNVK---RRMEVIASINGVTIYDD-FAHHPTAIQTTLDGLRKQVG 351

Query: 366 HGEGRRIAVLGDM---CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPR 420
               R IA++        +G  +++    L       N     +     +   L +    
Sbjct: 352 QE--RIIAIVEPRSNTMRLGVHTKTLAESLG------NADMAIIYQPEAMGWDLGELKKY 403

Query: 421 SIHVHYSETMDGLFLFIQ 438
           + ++    ++D +   ++
Sbjct: 404 AGNIEICSSLDDIINKLK 421


>gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
 gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
          Length = 516

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 136/420 (32%), Gaps = 62/420 (14%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR +     FF  KG       ++  A ++GA   V   +         +P   
Sbjct: 30  TSVAYDSRKVTAGTLFFC-KGNFL--PKYLTMAREQGAVAYVAEQEYP---EGGDLPAII 83

Query: 88  VDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V D   A+  L        + + TIIAITG+ GKTTT  M    L      +  + S  +
Sbjct: 84  VKDEQEAMALLGAAFYGFPQDELTIIAITGTKGKTTTAYMADHILGRATDQHVALFSTLD 143

Query: 146 HIGVPLTLARMPVD--------------------VDFGIFELGMSHLGEIRFLTHLVRPH 185
            +       R   D                    +   + E+        +  T+ +   
Sbjct: 144 RVLGNRPADRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSSQAYK--KHRTYGLHFD 201

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           I +   I+P H+         +    K ++   L  +G   +N + +    +   + A  
Sbjct: 202 IGIFLNISPDHIGRNEHPTFADYLHCKEQL---LVNSGICLINAETAHLTDVYYTAKATT 258

Query: 244 I-KTIYSFGKSKNA---------DFQLRKWKQCSEQSWMEV-------QLQGKSMEVVHH 286
             + IY F +   A         DF+ R   +   +S  E+       Q  G        
Sbjct: 259 QPENIYLFARHGAAVQLPDGAAIDFEYRNDLEDLHESEFELAACSPKAQQLGIQGRYKTS 318

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N    +  V        TA  A++       +G+       Q     ID  Y
Sbjct: 319 VPGD---YNEGNAVAAVISTALAGATAADAVATLDHVHIKGRMEMQKTRQHGTIYID--Y 373

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS+K  ++ L + +    G+   VLG     G+   S      + LS  +   + L
Sbjct: 374 AHNYASLKRLLAFLKRQTAA--GKVTVVLGA---TGDKGISRRQGFGKALSEEHPDQIIL 428


>gi|46446881|ref|YP_008246.1| putative UDP-N-acetylmuramate-alanine ligase murC [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|59798298|sp|Q6MBS8|MURC_PARUW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46400522|emb|CAF23971.1| putative UDP-N-acetylmuramate-alanine ligase murC [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 454

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 127/376 (33%), Gaps = 42/376 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++  + A L  +   +A+TG+ GKTTT  +L         T     + ++   V   + 
Sbjct: 89  LHRAELLALLTRQKKSLAVTGTHGKTTTSSLL--------ATTLLEANCDSSFAVGGIIP 140

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEI 213
           +   +   G+ +L +    E         P+ A++T I   HL+++   E++   +  + 
Sbjct: 141 QFQSNAKHGLGDLFVFEADESDRSFLKYFPYGAIVTNIDNDHLNSYENSEDVLIQSFQQF 200

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +     +F   DD+  + L             S+G  ++ ++++    Q       +
Sbjct: 201 TSQISSPNHLFWCGDDTHLKFLNGIGQ--------SYGFGEHCNWRISNVFQKDFNLEFD 252

Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++   K    +  + IG H   N     G+   L     +       F      G   RC
Sbjct: 253 LEGNEKKYPSIKLNLIGRHNLLNGAAVFGLAMSLNISEASIRHTFERF-----CGVLRRC 307

Query: 333 ALNQGF-FTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381
                F  T+  + Y  +P  ++  +  + +            PH   R    LG   ++
Sbjct: 308 EYKGEFENTIFLDDYAHHPTEIQTTLEGIRKAIKSKRLIAVFQPHRFSRIKDCLGMYGKI 367

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
              +         V  +Y      + G     +  + +   S+ V Y      L   +  
Sbjct: 368 FNNADE-----VFVTDVYGAGETPIEGISQQQIIQEISENSSVPVKYVP-RTALGHKLSE 421

Query: 440 SLVDGDVVVVKSSNSC 455
            +   DV+V   +   
Sbjct: 422 FIQPLDVIVTLGAGDV 437


>gi|260893414|ref|YP_003239511.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
 gi|260865555|gb|ACX52661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 114/360 (31%), Gaps = 39/360 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L +A R  ++A ++A+TG+ GKTTT  +      +        G+    +   +  AR
Sbjct: 94  GELELAFRF-ARAPVVAVTGTNGKTTTTALTGAIFQAAGLRTWVAGNIGLPLSEVVEEAR 152

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + E+    L      T   +P +AVI  + P HL           AKA IF 
Sbjct: 153 ---PEDILVVEVSSFQL----ETTSTFKPVVAVILNLTPDHLDRHGDFNSYRQAKARIFA 205

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    LNYDD     + A S       +  F +                +  + V+
Sbjct: 206 RQTDKEVTVLNYDDPEVRNMAADS----CGRVLFFSRRHK-----LATGVWVAKGEILVK 256

Query: 276 LQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +G   +V         G H  +N L            ++       V    +G   R  
Sbjct: 257 WEGVEGKVTEVASLALPGAHNLENALAATAAAVAQNVPLEVI---GRVLREFKGVAHRLE 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     +++S   NP +   A+          +   + + G     G    S    
Sbjct: 314 LVAEINGVKYVNDSKGTNPEATIKALEA-------YDCPIVLIAG-----GRNKGSDFRL 361

Query: 392 LAEVLSLYNISHVWLSGFHV--LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           LA  +    +  + L G     LA +        +  +  +       +     GDVV++
Sbjct: 362 LASKMKE-KVKALVLIGESAPLLAAQAKAAGVSDIVLARDLPDAVRRAREKARPGDVVLL 420


>gi|294666197|ref|ZP_06731451.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604015|gb|EFF47412.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 452

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 128/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A R+      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAERVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMG---CWTPVERFGFEASLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L  V     D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGVGIGQVQWPLVGRHNVLNGLAALAAVQAAGVDPATVMPALAQFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              N    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGNARDITVYDD-FAHHPTAIA---TTLQGLRAKVGAARVLV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P    V    H +  +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGDAHVAHDVDALLQTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 RPGDHVVFM-SNG 438


>gi|149371575|ref|ZP_01890991.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
 gi|149355202|gb|EDM43762.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
          Length = 444

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 113/348 (32%), Gaps = 35/348 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + AT++ ITGS GKTTT  +    L       A  G+        ++        +  + 
Sbjct: 101 TDATVVGITGSNGKTTTATLTFELLKEELNV-ALGGNIGKSFAEQVS----EEKYNNFVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I+       PHIAV+T ++P HL  +    ++  ++K  I     +     
Sbjct: 156 ELSSFQLDGIKDFA----PHIAVLTNLSPDHLDRYEYDYDKYIASKFRITMNQTEEDYFI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            + DD       +       K  +S      + A  +  +       +   + +      
Sbjct: 212 YDADDEEITKWMSVHEIKAKKLPFSLKQKFDEGAYIKDNQIVITINNTHFTMSI------ 265

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +    + ++L     T  ++L  F   E    R    +  G    +
Sbjct: 266 AALGLKGQHNVKNAMAATTVATLLKIRKATIRESLENFQGVE---HRLEKVVKIGNVLYV 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+  ++  +    G            G    + + DL  +++   + 
Sbjct: 323 NDSKATNVNATYYALDSMTSPTVWIVG------------GVDKGNNYEDLLPLVNE-KVK 369

Query: 403 HVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            +   G     +       + +   + +M              D V++
Sbjct: 370 AIICLGVDNQKIISQFGNVVDMMVEASSMAEAVKVAYKLSERNDTVLL 417


>gi|42526595|ref|NP_971693.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema denticola ATCC
           35405]
 gi|41816788|gb|AAS11574.1| UDP-N-acetylmuramate--alanine ligase [Treponema denticola ATCC
           35405]
          Length = 480

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 131/413 (31%), Gaps = 49/413 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A     N + + +I    +P     + +GAL++ +             I G  GKT+T  
Sbjct: 81  AAYSPDNNEEMYAIEQKDLPKMSYPEAIGALSRHSY---------SCGIAGVQGKTSTTG 131

Query: 125 MLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +    L  +K       GS     G   T+        + + E       E +       
Sbjct: 132 ITGSILKELKLPVSVLAGSVIKSFGDSCTMLN---GSKYFVAE-----TCEYKRHFLNFH 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHAL 242
           P   ++T I P H   +   E I +A  +  + L +   +F   DD    E  +    + 
Sbjct: 184 PKKIILTGIEPDHQDYYPTYESILTAFLQYIDRLPQFSELFYCADDDGACEAARLSFSSR 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                  +G+  + D++L       E+ +    L G S E      G H A N    + +
Sbjct: 244 PDLIFIPYGEKASGDYKLTVSGVRDEKLYFS--LAGFSGEFYLQIPGKHNALNAAAAIAL 301

Query: 303 VSIL------TADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKA 355
              L         +              G  +R       +    L+ + Y  +P ++K+
Sbjct: 302 SVSLLKEEYGEISMANVSAIKKAVSSYAGAKRRTELIGKVESKDILVYDDYAHHPTAIKS 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +S L Q  P  + R IA    M      +++   + A      +   V L      + +
Sbjct: 362 LLSGLRQFYP--KRRIIA--DFMSHTYTRTEALLEEFASCFE--DADMVILH-KIFSSAR 414

Query: 416 DALPRSI--------------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +     +              +V +   +     F+   L  GD+ +   +  
Sbjct: 415 EKYQGQVDAELLFNRTKKYHKNVFFFNEVLDAKNFVLEKLKPGDIFITIGAGD 467


>gi|28572692|ref|NP_789472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
 gi|62900691|sp|Q83HK0|MURD_TROW8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28410824|emb|CAD67210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
          Length = 480

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 143/417 (34%), Gaps = 59/417 (14%)

Query: 64  GAGLVVVNTDMVASIGSLSI----------PVFGV--DDVLGALNKLAVAARLRSKATI- 110
           GA  V    D +  +    I          PV     D  +  L+++ +A R+R K    
Sbjct: 61  GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRDKVNTC 120

Query: 111 --IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             I ITG+ GKTTT  +    L+      A  G+    +   +   R P   D+ + EL 
Sbjct: 121 PWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGTPVLDAV---RNPKGFDYFVVELS 177

Query: 169 MSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L  +       V+   +    +   HL      E    AK+ ++ G   TG    N 
Sbjct: 178 SFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYRAKSRVYHG--TTGFCVYNL 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQG 278
           DD   + +  ++          FG            +     R +    + S +E+    
Sbjct: 236 DDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGILCDRAFLSARKDSALEITSVE 295

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K  +        H+  ++L  + +   +  +  +  +AL  F        R      +  
Sbjct: 296 KLEKNKLSM--RHIISDVLCAVALARSVETNPLSISRALDEFCLSP---HRTEVVAKEMG 350

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEV 395
              +++S   NP ++ A++S  S        R I + G + +  ++S     F+      
Sbjct: 351 VMWVNDSKATNPHAVIASLSNFS--------RVILIFGGLMKGVDVSGIFDRFYE----- 397

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS---SLVDGDVVVV 449
                I  V + G +   + +   + I V   ++ D +   + +       GD V++
Sbjct: 398 ----TIKAVVVIGKNQSFVGNIKCKKI-VCIPDSNDPMSEAVAAADLLATPGDTVLL 449


>gi|86132605|ref|ZP_01051198.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
 gi|85816847|gb|EAQ38032.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
          Length = 445

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 117/349 (33%), Gaps = 36/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + ATI+ ITGS GKTTT  +    L          G+  +     +       ++D  + 
Sbjct: 101 TDATIVGITGSNGKTTTTMLTGFILEQAGINLGVAGNIGDSYAKMV----AQKEIDTYVL 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  + P HL  +    E   ++K  I    ++T  + 
Sbjct: 157 EISSFQLDGIADFA----PHIAVVLNVTPDHLDRYDYKFENYIASKFRIAMNQKETDYLI 212

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD        K         +S  +       ++        + + VQ+   +  + 
Sbjct: 213 YDADDPVSVDWLNKHPVRSKLLPFSLTQEFENGAFIKD-------NNLVVQIDNNTFTMT 265

Query: 285 HHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            + +   G H  +N +    + ++L     T  ++L  F   E    R    L       
Sbjct: 266 TNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVE---HRLEQVLKINNVQY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +   A+  ++  +    G            G    + + DL  +++   +
Sbjct: 323 INDSKATNVNATFYALDSMNDPTVWIVG------------GVDKGNDYRDLYPLINE-KV 369

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L       + +   + +M             GD V++
Sbjct: 370 KAIICLGVDNQKLMSHFENMVDIIVETPSMTEAVKIAYKVAERGDNVLL 418


>gi|170731931|ref|YP_001763878.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
 gi|169815173|gb|ACA89756.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
          Length = 461

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 126/370 (34%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +      G+  EV   
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+ +
Sbjct: 278 VQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVK---RRMEVRGSVDGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P ++   I+ L         R +AVL    E    +    +  +++  SL +   V+
Sbjct: 334 AHHPTAIDTTIAGLRARIGRQNARILAVL----EPRSNTMKLGVMKSQLPASLADADLVF 389

Query: 406 LSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P        + +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 38/306 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLAR 155
           S+  I+AITG+ GKTTT  +++       K      +   +I            P + + 
Sbjct: 486 SRVPILAITGTNGKTTTSRLISHICRQTGKVVGFTTTDGVYIDDYLVEKGDNTGPYSASM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    I  L  +  G +R      +  + V+  +A  HL   +   IE++A  K+ +
Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----E 268
            E +   G   LN DD     +  K        +  F  S +        ++       E
Sbjct: 606 AEVVSAEGYAVLNADDPLTASMAEKVKG----RVAYFSMSPDNPIIHDHIRRGGMAAIYE 661

Query: 269 QSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             ++ + L+G+         ++ V   G+   M  N L       +   D++   + +  
Sbjct: 662 NGYLSI-LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRT 720

Query: 320 FHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           F P       R           LID  Y  NPA  +A          +  G ++ V+G  
Sbjct: 721 FKPSVAQTPGRMNLFDLGHHHALID--YAHNPAGYEAV----GGFVGNWSGEKVGVVGGP 774

Query: 379 CEMGEL 384
            +  + 
Sbjct: 775 GDRRDD 780


>gi|82701657|ref|YP_411223.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
 gi|82409722|gb|ABB73831.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
          Length = 456

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 123/375 (32%), Gaps = 38/375 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
              ++A+ G+ GKTTT  ML   L          IG    + G+   L     +  F + 
Sbjct: 102 DKWVLAVAGTHGKTTTSSMLAWILEYAGMEPGFLIGGIPQNFGISARLG----NSGFFVI 157

Query: 166 ELGMSHLGEIRFLTHLVRPH--IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  H   A++  +   H   F  +EEI      +   +   G I
Sbjct: 158 EADEYDTAFFDKRSKFVHFHPRTAILNNLEYDHADIFRNLEEIEQQFHHLVRVVPGKGLI 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N  +   E +  K     ++ I        AD              + V   G+S   
Sbjct: 218 VSNGQEENLERVLRKGCWTPVERI-GVANGWEADV--------LTDGAVAVSFLGESQGT 268

Query: 284 VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G H   N L  L         V   I AL+ F   +   +R          T+ 
Sbjct: 269 LLWELLGKHNRMNALAALAAARHAGVAVKAGIAALAEFRNVK---RRMEVKGITRDITVY 325

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSL 398
           D+ +  +P +++  I  L         R IAVL      M  MG   +S         SL
Sbjct: 326 DD-FAHHPTAIRTTIDGLRS--RVKGARIIAVLEPRSNTMK-MGVWKESL------ADSL 375

Query: 399 YNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                V+    ++     +  LP        E +D L   I +    GD V++  SN  G
Sbjct: 376 TGADVVFCYAANLGWDLPQALLPLGEKAVAFEELDQLIAAITAYAQPGDHVLIM-SN-AG 433

Query: 457 FYRLINLLLEEFPAI 471
           F  +   LL    A+
Sbjct: 434 FGGIHEKLLTRMAAV 448


>gi|294085903|ref|YP_003552663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665478|gb|ADE40579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 451

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 99/275 (36%), Gaps = 34/275 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++ +A R +S A +IAITG+ GK+T   +L   L+      A  G+    IG      
Sbjct: 99  ISEVELALRAKSNARLIAITGTNGKSTCTALLAHCLTEAGAKIAVGGN----IGDAACSL 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             P    + I EL    L      T  + P   V+  I P HL    G++   +AK  + 
Sbjct: 155 EDPGTNGYIILELSSYQL----ETTPSLAPDFGVVLNITPDHLDRHGGMDGYVAAKQLMV 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                 G + L  DD++     A ++     T+ +   S                     
Sbjct: 211 TATRAGGHVILGSDDAYVRDF-ANTNVADTVTVKTVTSSDA------------------- 250

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +G+         G H AQN      I+ +L    +     ++ F    G   R +   
Sbjct: 251 -PKGRDASPALK--GAHNAQNAAAMASIMRLLGYAENMIDAGMASF---AGLPHRLQPVG 304

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             G  T I++S   N  +   A++  + I     G
Sbjct: 305 QTGHITFINDSKATNGVAAAKALTAFNNIYWIAGG 339


>gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 469

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/457 (13%), Positives = 149/457 (32%), Gaps = 42/457 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            + +G +  I+ D + +     F+A        H  I  A+ +GA  ++ N        +
Sbjct: 9   EISKGRIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGARSILTNQKYEEECLA 65

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +  F         +++      +  A + A+TG+ GK +     +   +   K    +
Sbjct: 66  QGVNFFVHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSL 125

Query: 141 GSYN-------------NHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRP 184
            + N             + I     +  +  D+     E   L +S       +   V  
Sbjct: 126 SASNEPTDALGLWQEKDHMILDAADMYSILDDLAGRRIEYCCLAISGAAIESRMIDSVNL 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             A  + +    L     I++    K  +  E L + G + L     +   +        
Sbjct: 186 KAAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQHCPN-- 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K + ++G++  +D QL       +   + +++ GK M +  + +G     N++  +G+ 
Sbjct: 244 -KKVCTYGRA-TSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D  +              G             ++ +     P+ +   +  +   
Sbjct: 302 ISCGIDPSSIEHE----QISPLAGYMEFLEEYGEERKIMTDC-AQTPSELHDLLLSIKWH 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
            P+ +   +    +  E G+ +    + +A++ +      ++ S  +   L +   R + 
Sbjct: 357 FPYNDVTLVLRCSENYE-GKNT----LKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELM 411

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVV---VKSS 452
                    E       +  ++    +++V   VKSS
Sbjct: 412 SCCPKAIEIEDRKKAMEYAINNCKPSEIIVMQGVKSS 448


>gi|225011611|ref|ZP_03702049.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
 gi|225004114|gb|EEG42086.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
          Length = 445

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 116/350 (33%), Gaps = 39/350 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + AT+I ITG+ GKTTT  +    L +        G+        +         D+ + 
Sbjct: 102 TNATLIGITGTNGKTTTTMLTYEILKNAGLNVGLAGNIGTSFARQV----AQEQFDYYVL 157

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I    H   PHI+VIT I P HL      +E    +K +I +   +     
Sbjct: 158 EISSFQLDNI----HDFAPHISVITNITPDHLDRYSYSLENYIKSKFKIIQNQTQKDFFL 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--- 281
            N DD   +   ++      K  Y F        ++++     E   + ++ + K+    
Sbjct: 214 FNADDPILKEAISEHKNKASKVPYGF--------EVKREGSTHENDHLILKHRNKNTMID 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N +    I S+L    DT           +G   R    L     + 
Sbjct: 266 TTQFTLTGRHNLLNAMAAATIGSLLDISKDTI---RESLTHFKGAPHRMEKVLTIQRVSY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +   A+  +           I ++G + +  + +          L     
Sbjct: 323 INDSKATNVNATYFALESIDT-------PLIWIVGGVDKGNDYTTLL------PLIRTKA 369

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
             +   G    ALK+   R   + + ET  M              D V++
Sbjct: 370 KAIICLGEDNEALKNTFERVTDI-FIETQSMSEAVKIAHKVAAPKDTVLL 418


>gi|317401778|gb|EFV82394.1| cyanphycin synthetase [Achromobacter xylosoxidans C54]
          Length = 856

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 132/398 (33%), Gaps = 56/398 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A+ G+ GKTTT  +    L +         S   ++     
Sbjct: 455 EAIIANMYADGDDGRIPVVAVAGTNGKTTTVRLTAHILGTAGNRVGMTNSDGVYVDNLRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          M  DVD  +FE   +  G +R      R ++A++T I    HL  
Sbjct: 515 DTGDCSGPRSARSVLMHPDVDAAVFE--TARGGILREGLAFDRCNVAIVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-- 255
              S +E++A  K  I + +  +GT  LN  D     + +        +I  F + +N  
Sbjct: 573 GYISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMASSCPG----SITYFAEDRNHP 628

Query: 256 --ADFQLRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSI 305
             A  + +  +         V  QG          + +  +G      +N + ++     
Sbjct: 629 VMATHRAQGLRVVYRDGDAIVAAQGGEETRFPLAEIPLTRNGTIVFQVENAMASIAAAWA 688

Query: 306 LTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L  D     + L+ F +  +    R+     +G   + D  Y  NP ++ A +  +  + 
Sbjct: 689 LGLDWSIVRRGLATFVNDAQTAPGRFNVFDYRGATVIAD--YGHNPDAILALVRAVDAMP 746

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                RR  V+    +  +       ++           V L           G  +  L
Sbjct: 747 AK---RRSVVISGAGDRRDEDIRMQTEILGEA----FDDVLLYQDQCQRGRADGEVLALL 799

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L  +    + E + G         + L  GD+ ++
Sbjct: 800 QQGLVNASRTRHIEEIHGEFLAIDTALARLNAGDLCLI 837


>gi|163750924|ref|ZP_02158157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
 gi|161329348|gb|EDQ00345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
          Length = 478

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 136/383 (35%), Gaps = 44/383 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI+G+ GKT+T  ML   L          IG    + GV   L        F + E  
Sbjct: 109 VLAISGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLG----GSAFFVVEAD 164

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P   VI  +   H   F  ++ I      +   +   G I   
Sbjct: 165 EYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFHHVIRTVPGEGKIIWP 224

Query: 227 YDDSFFELLKA----------KSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEV 274
            D    + +              H+     I S   S  AD Q         ++    E+
Sbjct: 225 KDSEAVQQVIDMGCWSEQETYARHSDSDSGIVSGKGSSAADNQGTWSSKLIAADGHQFEL 284

Query: 275 QLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            L G+S  ++    IG H  +N  M +     +    ++AI+AL+ F P +   +R    
Sbjct: 285 FLDGESQGILDWSLIGQHNVENATMAIAAARHVGVKPESAIQALTQFEPPK---RRMELI 341

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----H 389
                  + D+ +  +P ++    + L          +I ++     +   S +     H
Sbjct: 342 GEVNGIEVYDD-FAHHPTAIA---TTLQGCRAKVGEAKITII-----LEPRSNTMKSGVH 392

Query: 390 ID-LAEVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            D LA  +SL + ++++      + + A        + V Y   +D +   + S    GD
Sbjct: 393 KDTLAGSMSLADQAYLYQADSIDWDIEAAMAKAELPVSVLY--DIDEIVDAVASKAKSGD 450

Query: 446 VVVVKSSNSCGFYRLINLLLEEF 468
            +++  SN  GF  L   LLE+ 
Sbjct: 451 TIIIM-SNG-GFGGLHKKLLEKL 471


>gi|1841788|gb|AAB47522.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 280

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 105/289 (36%), Gaps = 35/289 (12%)

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            ++  +E + S      +   +   +  N+D             L     YSF  ++ AD
Sbjct: 2   DHYCDLEAVISTFKTFSDNCSQ---LIANWDCPTVR------DRLPGTISYSFDPARGAD 52

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           + + +       +   +  +G+ +  +H   +  H   N L  +     L  D  +  + 
Sbjct: 53  YTVDQVSFRGSGTQARIWERGELLGRIHLPLMEAHNLSNALAAIAACRHLGMDFASIREG 112

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA-------ISVLSQISPHGEG 369
           L+ F   EG  +R+    +      +D+ Y  +P+ + A        I       P    
Sbjct: 113 LAGF---EGARRRFEFRGSAQGIQFVDD-YAHHPSELAATLAAARLQIDSGCSRLPEVPK 168

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH------VLALKDALPR 420
           R +A+          +Q+F  + A+     +   IS ++ +G           L DA+ +
Sbjct: 169 RLVAIF--QPHRYSRTQAFLAEFAQSFGPADLVLISDIYAAGERNPGQLSGQTLADAIAQ 226

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +VHY+  ++ +   +   L  GD+ +   +      ++I  LL+ +
Sbjct: 227 YQANVHYAPDLEAVEQRLHQLLQPGDLALFLGAG--NLNQVIPRLLDHY 273


>gi|306822431|ref|ZP_07455809.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           ATCC 27679]
 gi|304553976|gb|EFM41885.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           ATCC 27679]
          Length = 532

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 122/369 (33%), Gaps = 45/369 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV ++ +      +       + ++   ++  + A L      + + G+ GKTTT 
Sbjct: 99  GARTVVFSSAIKPDNPEIVAAYEAGERIV---HRSDILALLMQSKRAVTVAGAHGKTTTS 155

Query: 124 EMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            ML   L +         +YA  GS     G  L            + E   S     ++
Sbjct: 156 SMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGS-VLVAEADESDGSFAKY 214

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P IA+IT     HL ++    +  +A  E          + +  DD     +  
Sbjct: 215 -----HPEIAIITNAEADHLDHYGTEAKYRAAFVE--HAGRAGKAVIMCGDDDGALAVLR 267

Query: 238 KSHALGIKTIYSFGKSKN---------ADFQLRKWKQCSEQS--WMEVQLQG-------K 279
                  + +  +    +         A  ++    + ++       + L         +
Sbjct: 268 ALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESAQSGTEHFILHLPAGLVDVEER 327

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G H A+N    L    +L  DV+ A  A + F    G  +R++   +    
Sbjct: 328 RVPVTLTVPGIHNARNATAALLATVMLGVDVERAAAAATSFL---GAARRFQIRGSVNQV 384

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID+ Y  +P  + A +    +  P      I        +   +  F  + AE L+  
Sbjct: 385 TVIDD-YAHHPTEIAALLDAARRRYPEAGIHVIF----QPHLFSRTMFFAREFAEALAK- 438

Query: 400 NISHVWLSG 408
               V ++G
Sbjct: 439 -ADDVIVTG 446


>gi|154250395|ref|YP_001411220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769434|sp|A7HNT0|MURD_FERNB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154154331|gb|ABS61563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
          Length = 420

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 126/378 (33%), Gaps = 69/378 (18%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L  K  IIA+TGSVGK+TT  M+   +S   K+ +   S N  I +   L       ++
Sbjct: 97  FLDWKPKIIAVTGSVGKSTTVAMINHLIS---KSASSQISGNFGIPIAQVLLE-GKKPEY 152

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L    + T   +P++AVIT I P HL     +E    +K +I +  +    
Sbjct: 153 IVVEISSFQL----YWTPFFKPNVAVITNIYPNHLDWHPSMEHYVDSKFKITKFQDNEDH 208

Query: 223 IFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              N  D   F+ L                    A  Q ++           V  + + +
Sbjct: 209 FVYNPKDMETFKRL--------------------ALVQAKRVP-------FTVDFKFEEI 241

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                       +N+     ++ +L         ++S+         R            
Sbjct: 242 PFHIRT--KQNMENIAAAKTVLKVLGLP-----FSMSMLEDFTPLPHRMEYCGTINGAHY 294

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N A++  A+                ++      G+     +  LA  +S    
Sbjct: 295 YNDSKATNAAAVVKALENFDN-------NLYLIIA-----GKGKNEDYSKLANEISK-KC 341

Query: 402 SHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
             V + G    A++  L  R+++      ++     I     +GD V++    +S     
Sbjct: 342 KFVAIVGPISDAVEPYLKERNVNYKRFSNIEEAVFEISKMAKEGDYVLLGPAGASYDAYK 401

Query: 453 ----NSCGFYRLINLLLE 466
                   F  ++  L++
Sbjct: 402 NFEERGNHFKEIVKKLMQ 419


>gi|134294696|ref|YP_001118431.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
 gi|134137853|gb|ABO53596.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
          Length = 461

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 121/358 (33%), Gaps = 31/358 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   + + G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPRVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
                 E + A+        +  FG                 E     V  Q + + EV 
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDE--RFAVYSQAQRVGEVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGDHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRARIGREHSRILAVL----EPRSNTMKLGVMKAQLPASLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           V+  G           L DAL P     H  + +  L   + ++   GD V+V  SN 
Sbjct: 388 VFGYGAPSGRDALGWNLGDALAPLGAKAHAFDDLHLLVKAVVAAARPGDHVLVM-SNG 444


>gi|309806265|ref|ZP_07700278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167249|gb|EFO69415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 138/392 (35%), Gaps = 39/392 (9%)

Query: 68  VVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +         + +  IP     V    D   ++      A   S A  + +TGS GKTTT
Sbjct: 68  IFAKEHFDYLVKNPGIPYENPLVQAAKDANVSIITEPEVALAVSSAPYVCVTGSNGKTTT 127

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             +    + +             +IGVP++   +  +  D  + E+    L       + 
Sbjct: 128 VMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMG----VNT 183

Query: 182 VRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P +A I  I    H+      E   +AK  I +  +K+     N+D    + +  +  
Sbjct: 184 MKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQ---KNILEQEL 240

Query: 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           ++    + +F  +S  AD+ + +    S+     +++            G H  QN L+ 
Sbjct: 241 SITKANVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQNSLVA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I  I+ A  +     LS F    G   R +  +      + ++S + N  +   AI  
Sbjct: 295 IAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAIPS 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            SQ         + + G +            +L  +L   ++  + L G     L DA  
Sbjct: 352 FSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAIVLYGETKYLLADAAR 398

Query: 420 RS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++    +    T+            DGDV++ 
Sbjct: 399 KAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 517

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 148/433 (34%), Gaps = 54/433 (12%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + IQG      P           GI+ D+R + P       KG  +   +++    + 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKG-RFKA-EYLNGIDEA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           G    V  T+  A+  +   P   V+D   A++ L+       +++ T+I +TG+ GKTT
Sbjct: 75  GLAAYVAETEYSAATAT---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTT 131

Query: 122 TKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDV-----DFG 163
           T       ++++     A   S +N +     +             RM  +       + 
Sbjct: 132 TSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYL 191

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTG 221
           + E+        R   + +   +A    I+P H+S       E+    K +I    +   
Sbjct: 192 VMEVSSQAYKVDR--VYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAKS-- 247

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------NADFQLRKWKQCSEQSWMEVQ 275
            + L  D    +LL+  + A GI  + +F          +AD     W    E +   + 
Sbjct: 248 -LVLGADSLHADLLREDAEAAGIG-VTTFALHDADNAGTSADVVA--WPADPEHASFHIA 303

Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +++   H  I G     N    + I       +D A  AL         G+  +   
Sbjct: 304 DGDQALGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDA-GALHAIESVRIAGRMEQFRD 362

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q     I + Y  N AS+ A +  + +       R   V G     G  +     ++ E
Sbjct: 363 PQSNTLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGS---AGNKAYDRRKEIVE 418

Query: 395 VLSLYNISHVWLS 407
                  + ++ +
Sbjct: 419 AAENRIANFIFTA 431


>gi|260434852|ref|ZP_05788822.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
 gi|260412726|gb|EEX06022.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
          Length = 469

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 152/432 (35%), Gaps = 61/432 (14%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA 108
           D +  A   G+ +VV++T +  S   L       + ++   D+L AL +         + 
Sbjct: 66  DAVTEATAAGSPVVVISTAIPESNPELQRARQQGLEIWHRSDLLAALIE---------QQ 116

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             IA+ GS GKTTT  ++T  L    +   A IG     +G      +  +     + E 
Sbjct: 117 PSIAVAGSHGKTTTSTLITTLLLEADQDPTAVIGGIVPSLGSNGHAGQGKL----LVAEA 172

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++F      P + VIT +   H  ++S ++++ S       G ++   +  N+
Sbjct: 173 DESDGSLVKF-----SPSLGVITNLELDHTDHYSNLDDLISTLQRFAGGCDR---VLANH 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           D    +     +        +S   +++ DF         ++        G  + +    
Sbjct: 225 DCPILQAHFQPTAW------WSNQSAESVDFAALPLSLEGDRCVTRFYEAGHPVGDFTLP 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N    L    +     D  ++ L+        G+R+          ++D+ Y
Sbjct: 279 MAGLHNLSNATGALAACRMEGLPFDQLVEGLAGLKTP---GRRFDLRGTWKGRHIVDD-Y 334

Query: 347 NANPASMKAAISVLSQIS-------PHGEGRRIAVLGDMCEMGELSQSF---------HI 390
             +P+ ++A + +   +        P    R +AV          ++ F         + 
Sbjct: 335 AHHPSEVQATLEMARLMVRSGRSPLPTAPQRLLAVF--QPHRYSRTRQFLDGFAKALQNC 392

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           DL  +  +Y      L G    AL D    L   + +  ++ +D L   +     + D+V
Sbjct: 393 DLLLLAPVYPAGEQPLQGISSNALADRVRKLKPDLKIVVADNLDQLTELVIQQSRENDLV 452

Query: 448 VVKSSNSC-GFY 458
           +   +    G +
Sbjct: 453 LAMGAGDVNGLW 464


>gi|255505599|ref|ZP_05347122.3| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bryantella
           formatexigens DSM 14469]
 gi|255266860|gb|EET60065.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bryantella
           formatexigens DSM 14469]
          Length = 468

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 118/353 (33%), Gaps = 36/353 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+  ++A+TG+ GKTTT  +L   +   + +   +G+        +T      +  
Sbjct: 115 AYENSRGDVLAVTGTNGKTTTTSLLGAIMKHARDSVFVVGNIGVPYTQMVT---QTTEDS 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I       RP ++ I  I P HL+    +EE    K  I        
Sbjct: 172 VTVAEISSFQLETIE----AFRPKVSAILNITPDHLNRHHTMEEYIRVKELITLNQTPED 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRKWKQCSEQSWMEVQLQG 278
           T  LNY+D   E+L+    +L  + I+        K       + +     + +     G
Sbjct: 228 TCVLNYED---EILREFGKSLSCRVIFFSSLRTLEKGISLNGDRIEYRDGDTVIPFCSTG 284

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +         G H  +N++    +       V+     L  F   E    R         
Sbjct: 285 E-----LKLPGRHNYENVMAAAAMALAYGVSVEDICYVLKRFTAVE---HRIEFVAEVDG 336

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP +    I  +         R   ++G     G    S + +  +    
Sbjct: 337 VAYYNDSKGTNPDAAIKGIQAMD--------RPTLLIGG----GYDKNSDYEEWIQAFDG 384

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
             + ++ L G     +K+A  R         +T +  F F       GD V++
Sbjct: 385 -KVRYLVLIGQTREKIKEAAERCGFTDTVLADTFEEAFDFCAGHARRGDAVLL 436


>gi|145595523|ref|YP_001159820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salinispora
           tropica CNB-440]
 gi|145304860|gb|ABP55442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinispora
           tropica CNB-440]
          Length = 448

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 130/385 (33%), Gaps = 47/385 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLA----------VAARLRSKATIIAITGSVGKTTTKEML 126
           +   + +   GV +    L +L                   A  + +TGS GK+TT  ++
Sbjct: 70  AAADVVVRSPGVPNTHPWLAELWRRQVPVTQGTALWMADHAARTVGVTGSKGKSTTSSLI 129

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  L+++ +     G+                  D  + EL      ++        P +
Sbjct: 130 SHLLAAVDQPNVFGGNIGVPTLD-------LPAADLYVLELSSYQCSDL-----TDSPRV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T + P HL    G  E    K  +     +  T+ +N  D         +  LG + 
Sbjct: 178 AVVTALFPEHLDAHGGEREYYRDKLNLLAHGPE--TVVVNGADPRL------AAELGDRP 229

Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +   G                + + W  +  Q      V   +G H   N+ + L ++ +
Sbjct: 230 VVRAGTPDT-----THVAGGPDGTPWFHLGDQPLFPRAVLPLVGRHNEGNLCVALAVLDV 284

Query: 306 LTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L  DV      L+V     +G   R    ++    T +D++   +P +   AI       
Sbjct: 285 LGVDVLARRDTLAVAVAGFQGLAHRLTEIVDPSGLTFVDDTLATSPYAAMHAIDA----- 339

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +GR + V+    + G         LAE      +  V  SG  ++A  D LP+ +  
Sbjct: 340 --YDGRALTVIVGGADRGLDYTPLRDHLAE--REITVIGVPDSGARIVAALDGLPK-VRC 394

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +       +     G VV++
Sbjct: 395 DVTGDLVEAVRLARRVTPAGGVVLL 419


>gi|301630397|ref|XP_002944308.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like
           [Xenopus (Silurana) tropicalis]
          Length = 576

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 134/410 (32%), Gaps = 53/410 (12%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L  V     A   SL   +      L AL+     A       ++A+TG+ GKTT   
Sbjct: 154 AALAPVLEAAHACGASLGGELDLYSQALHALHTQHGYA-----PVVLAVTGTNGKTTVTA 208

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLV 182
           +    L    ++ A  G+    +   L  AR+      +  + EL    L       H  
Sbjct: 209 LTGQLLQHAGRSVAVAGNIGPTLLDTL-AARIAAQNLPEVWVLELSSFQLDG----VHGF 263

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-----KA 237
            P  AV+  +   HL     +    +AKA IF        + LN +D     +     + 
Sbjct: 264 EPTAAVVLNLTQDHLDWHGDMAAYGAAKAHIFGQ---HALMVLNREDPAVMQMLPAPARV 320

Query: 238 KSHALGIKTIYSFG---KSKNADF------------QLRKWKQCSEQSWME---VQLQGK 279
           K      +T  +FG     +  DF            +  +    ++++ +    + LQ  
Sbjct: 321 KLQKPQSRTHVTFGGTLPQRPGDFGIETVNGMVWLVRAHQADATAKRTRLHEEPLHLQRL 380

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H A N L  L +       +   +          G   R       G  
Sbjct: 381 MPADALRIRGRHNACNALAALALAQAAGCALGAMLHG---LRAYRGEPHRVESVGIVGGV 437

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              D+S   N  +  AA++ L       E R + +LG   +  + +      LA  ++  
Sbjct: 438 EYFDDSKGTNVGATVAALAGLG-----LERRLVLILGGDGKGQDFAP-----LATPMA-R 486

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++    L G     L  AL    + +  + +M+       +    GD V+
Sbjct: 487 HVRAAVLIGRDAAQLGAALQDTGVPLLRAASMEDAVQQAAAQAQSGDAVL 536


>gi|290473427|ref|YP_003466293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
 gi|289172726|emb|CBJ79497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
          Length = 456

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 127/367 (34%), Gaps = 30/367 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   +   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYKPGFLIGGVPGNFDVSAQIGESP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +  +      +   +  +G I + 
Sbjct: 161 EYDCAFFDKRSKFVHYGPRTLIMNNLEFDHADIFENLAAVQKQFHHLVRVVPGSGKILVP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D   + +        ++ +      +  ++Q +K  Q  + S  +V  Q + + EV  
Sbjct: 221 DNDINLKHVIGMGCWSELEHV-----GETGNWQTKKVSQ--DSSIYQVFHQSEQVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L+ +     +      A + L  F       +R          ++ D+ 
Sbjct: 274 SLVGEHNMHNGLIAIAAAHHVGVQPADACQVLGDFINAR---RRLELRGEVNGISVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           +  +P ++   ++ L      G  R +AVL    E    +    +   ++         V
Sbjct: 330 FAHHPTAILVTLAALRS-KVGGVARILAVL----EPRSNTMKMGMSKNDIAPSLGRADEV 384

Query: 405 WLSGFHVLA--LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L     +   + +     I    +S  +D L   I  +   GD +++  SN  GF  + 
Sbjct: 385 FLYQPANIPWQVAEIAEHCIQPARWSADIDALVRMIVEAAQPGDYILIM-SNG-GFDGIH 442

Query: 462 NLLLEEF 468
             LL E 
Sbjct: 443 EKLLTEL 449


>gi|308048066|ref|YP_003911632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
 gi|307630256|gb|ADN74558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
          Length = 433

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 136/428 (31%), Gaps = 64/428 (14%)

Query: 31  SIDSRSIAPQE-------AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             DSR+  P         A  A++   +DG       + +   LVV     + +      
Sbjct: 33  VWDSRANPPGADTLARDFAHVALQTGPFDG-----DVLAQAKRLVVSPGIDLRTPALAQA 87

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              GV+ V      + + AR  + A ++AITGS GK+T   ++     +   +    G+ 
Sbjct: 88  IAAGVEVV----GDIELFARA-ADAPVVAITGSNGKSTVTTLVGHLAQACGVSVGVGGNI 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
                    L  +       + EL    L      T  +   +  +  ++P HL  +   
Sbjct: 143 GTP-----ALDLLGQGHQLYVLELSSFQL----ETTRSLPAQVGTVLNVSPDHLDRYDSY 193

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLR 261
           E    AK  ++    +      N  D         +         SFG       +F + 
Sbjct: 194 EAYRDAKLALY---PQCRIALFNRADH-------NTLPSSHPRTLSFGPDAPDGDNFGVV 243

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  Q+ ++              +G H  QN+L  L +      ++D  +   S   
Sbjct: 244 GDWLMQGQTRLK-------RRDQLTLVGAHNEQNVLAALALGQAAGLEMDAML---SALD 293

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              G   R      +     +++S   N  + +AA+  L        GR   + G   + 
Sbjct: 294 SYRGLPHRCELVAERAGVRYVNDSKATNLGATQAALDGLE------LGRVWLIAGGDAKG 347

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +LS      LA  L+      +   G    A+      +  V    +++          
Sbjct: 348 QDLSV-----LAPALNQLA--GLITLGQDGPAIAALRSDATEVV---SIESAVAVAADQA 397

Query: 442 VDGDVVVV 449
             GD+V++
Sbjct: 398 RAGDIVLL 405


>gi|325473131|gb|EGC76327.1| UDP-N-acetylmuramate-alanine ligase [Treponema denticola F0402]
          Length = 480

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 131/413 (31%), Gaps = 49/413 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A     N + + +I    +P     + +GAL++ +             I G  GKT+T  
Sbjct: 81  AAYSPDNNEEMYAIEQKDLPKMSYPEAIGALSRHSY---------SCGIAGVQGKTSTTG 131

Query: 125 MLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +    L  +K       GS     G   T+        + + E       E +       
Sbjct: 132 ITGSILKELKLPVSVLAGSVIKSFGDSCTMLN---GSKYFVAE-----TCEYKRHFLNFH 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHAL 242
           P   ++T I P H   +   E I +A  +  + L +   +F   DD    E  +    + 
Sbjct: 184 PKKIILTGIEPDHQDYYPTYESILTAFLQYIDRLPQFSELFYCADDDGACEAARLSFSSR 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                  +G+  + D++L       E+ +    L G S E      G H A N    + +
Sbjct: 244 PDLIFIPYGEKASGDYKLTVSGVRDEKLYFS--LAGFSGEFYLQIPGKHNALNAAAAIAL 301

Query: 303 VSIL------TADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKA 355
              L         +              G  +R       +    L+ + Y  +P ++K+
Sbjct: 302 SVSLLKEEYGEISMANVSAIKKAVSSYAGAKRRTELIGKIESKDILVYDDYAHHPTAIKS 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +S L Q  P  + R IA    M      +++   + A      +   V L      + +
Sbjct: 362 LLSGLRQFYP--KRRIIA--DFMSHTYTRTEALLEEFASCFG--DADMVILH-KIFSSAR 414

Query: 416 DALPRSI--------------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +     +              +V +   +     F+   L  GD+ +   +  
Sbjct: 415 EKYQGQVDAELLFNHTKKYHKNVFFFNEVLDAKNFVLEKLKPGDIFITIGAGD 467


>gi|53726123|ref|YP_104043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 23344]
 gi|67643581|ref|ZP_00442326.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei GB8 horse 4]
 gi|121598668|ref|YP_991767.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei SAVP1]
 gi|126449432|ref|YP_001082804.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10247]
 gi|251766617|ref|ZP_04819730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei PRL-20]
 gi|52429546|gb|AAU50139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 23344]
 gi|121227478|gb|ABM49996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei SAVP1]
 gi|126242302|gb|ABO05395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10247]
 gi|238524952|gb|EEP88382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei GB8 horse 4]
 gi|243065262|gb|EES47448.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei PRL-20]
          Length = 470

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSAQLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 221 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 388 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 445

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 446 FGGVHQKLLDALSA 459


>gi|221213225|ref|ZP_03586200.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD1]
 gi|221166677|gb|EED99148.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD1]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 125/370 (33%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +       +  EV   
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+ +
Sbjct: 278 VQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGSVDGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P +++  I+ L         R +AVL    E    +    +  A++  SL +   V+
Sbjct: 334 AHHPTAIETTIAGLRARIGRQNSRILAVL----EPRSNTMKLGVMKAQLPASLADADLVF 389

Query: 406 LSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L DAL P        + +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAEAARPGDHVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|86134329|ref|ZP_01052911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
 gi|85821192|gb|EAQ42339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 133/375 (35%), Gaps = 41/375 (10%)

Query: 83  IPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P+    VD+ +  ++++  AA    KATI+ ITGS GKTTT  +    L +        
Sbjct: 93  VPLVKKLVDNNIPVISEIEFAANFT-KATIVGITGSNGKTTTTLLTHHILKNANLDVGAA 151

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+  +   + +       + +  + E+    L  I       RPHIA++T I P HL  +
Sbjct: 152 GNIGDSFALQV----AEKNYNNYVLEISSFQLDGITNF----RPHIAILTNITPDHLDRY 203

Query: 201 S-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               +   ++K  I +  E+T  +  + DD        ++       +  F   K     
Sbjct: 204 DYDFQNYINSKFRITKNQEETDFLIYDADDDVITGWLKENKTKA--KLLPFSNEKE---- 257

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKA 316
             K+    + + + + +Q     +    +   G H  +N +       +L    D   ++
Sbjct: 258 -LKYGAFIKDNNITINIQKDKFYMPISSLSIKGKHNTKNAMAATMAAQLLKVRKDAIKES 316

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           LS F   EG   R            I++S   N  +   A+  + Q +    G       
Sbjct: 317 LSNF---EGAEHRLENVAKIKDVHYINDSKATNVNATFYALECMDQQTIWIVG------- 366

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLF 434
                G    + + DL  ++    +  +   G     +K+     I     ET   +   
Sbjct: 367 -----GVDKGNDYTDLLPLVRE-KVKAIVCLGVDNEKIKNTFGNVIETI-VETAGAEEAV 419

Query: 435 LFIQSSLVDGDVVVV 449
                    GD V++
Sbjct: 420 KVSHKLAERGDAVLL 434


>gi|221202432|ref|ZP_03575464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2M]
 gi|221208109|ref|ZP_03581114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2]
 gi|221172012|gb|EEE04454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2]
 gi|221177709|gb|EEE10124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2M]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 124/370 (33%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLAPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +       +  EV   
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A  +L+ F   +   +R          T+ D+ +
Sbjct: 278 VQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGGVDGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P +++  I+ L         R +AVL    E    +    +  A++  SL +   V+
Sbjct: 334 AHHPTAIETTIAGLRARIGRQNSRILAVL----EPRSNTMKLGVMKAQLPASLADADLVF 389

Query: 406 LSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L DAL P        + +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAEAARPGDHVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|298241643|ref|ZP_06965450.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554697|gb|EFH88561.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 644

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 122/360 (33%), Gaps = 44/360 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
             L     II ITG+ GKTTT  ++   L +  +    IG     +     L ++  +  
Sbjct: 286 FFLACPGRIIGITGTRGKTTTTSLIYEILRAHGQAPVVIGGNVAGVETLSLLPQITPETL 345

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +    H + P +AV+T I P HL+ ++G+E+ A AKA IF    + G
Sbjct: 346 V-VLELSSWQLEGLAP--HSISPLVAVMTNIYPDHLNTYNGMEDYAEAKANIFRFQTEHG 402

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIY----SFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
               NYD+ +      ++      T      SF +S   D    + +  +          
Sbjct: 403 IAVFNYDNPWTRHFGLEAPGETWFTSVEHGGSFPRSALVDGTPTQVEPLAFA-------- 454

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H  +N+L+      +L        + +  F   +G   R        
Sbjct: 455 ------ETPLKGRHNLENILLATTTARLLGVSESVIAETVRRF---KGVSHRLEEVCVWH 505

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++++S + +P + + A+    Q         + V G   +   L Q       E + 
Sbjct: 506 GVRIVNDSTSTSPIAGQVALEAFEQ-------PIVLVAGGNTKHLPLEQWP-----ETII 553

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVV 449
                 + L G     L  AL + I                        +    GDV++ 
Sbjct: 554 KRCRDVILLPGSGTDELLPALRQEIERQGVIDPVRGTFADFHQAIDAALALTRPGDVLLF 613


>gi|217077223|ref|YP_002334941.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
 gi|217037078|gb|ACJ75600.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
          Length = 433

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 122/337 (36%), Gaps = 49/337 (14%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L  + K       +       L         +  +FE+  S  G          P
Sbjct: 117 MLAHVLLKLGKD---PTVFLGSTHPMLEHGNYRKGSNIAVFEMDESQPGF-----ENYNP 168

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              +IT I   H+ NF  ++   S      + ++       N +++             I
Sbjct: 169 DYLIITNIRGDHIENFKNLQHYNSCFENSCKNVK---ICVSNVENNI------------I 213

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                FG + + D+++ K +       + +       + + +  G H A N L  + ++ 
Sbjct: 214 NNSIKFGLN-DGDYKINKIENNKFSQKITINTPYGKKKFILNVPGVHNALNALSIISLLF 272

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + D  ++A S F   +   +R+  + N+    +ID+ Y+  P  +K+ +S    + 
Sbjct: 273 EMGYEKDLVLEAFSDFSLPK---RRFDISYNENDIVIIDD-YSHTPVEIKSLLSTAKSV- 327

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLS-----GFHVLALKD 416
              + ++I ++        L + +  + +E LSL +   I+ V+ +     G     + +
Sbjct: 328 --FKDKKITIIFQPHRYSRLKREW-KNFSEALSLADKIYITEVYGAFESKNGISARLIVE 384

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS------LVDGDVV 447
            +  +I   + +  + L   + S          GD++
Sbjct: 385 KINNAI---FVQEKEELLQILPSEPGVYIFAGAGDII 418


>gi|169334623|ref|ZP_02861816.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259340|gb|EDS73306.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
           17244]
          Length = 458

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 36/320 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GKTTT  ++     +        G+  N     +  A    D      E+   
Sbjct: 116 IAITGTNGKTTTTTLVGEIFKNAGYDTYVNGNIGNSF---INDAEKGDDNSVYALEVSSY 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L     L    +P IA++T I P HL   S  EE    K  +F   ++   + +N +D 
Sbjct: 173 QL----ELNDKFKPDIAIMTNITPDHLERHSTFEEYVRVKGNVFVNQDENDYLIVNKEDK 228

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HH 286
               L   + +  +   ++  + KNA+  L+          + +  +G+   ++      
Sbjct: 229 ILTGLSENAKSKVL--TFTVKEDKNANAYLKDEN-------IIIDFKGEVYPLIDINELK 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N++       +   + +T I  L  F   E    R            I++S 
Sbjct: 280 LYGLHNVMNVMAASLAAVVKGVEKETLINTLKNFKSVE---HRIEYVDTVDGIEYINDSK 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+  + +       + + +LG   +M         +L + ++  NI  + L
Sbjct: 337 GTNVDATVTAMKAMKK-------KTVLMLGGYDKMTPF-----DELVKSIND-NIKCIVL 383

Query: 407 SGFHVLALKDALPRSIHVHY 426
            G     +KD L +  + +Y
Sbjct: 384 YGAVQNKIKDTLDKYDYKNY 403


>gi|113869121|ref|YP_727610.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
 gi|113527897|emb|CAJ94242.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 132/375 (35%), Gaps = 38/375 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++A+ G+ GKTTT  ML   L          G     +     ++    + DF + E
Sbjct: 102 RKWVLAVAGTHGKTTTTSMLAWILEDAG---YNPGFLVGGVPQNFGISARVTESDFFVIE 158

Query: 167 LGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                       +  V  RP  A++  +   H   F  +  I +    +   +   G I 
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGQGRIV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
           +N  +     +  +     ++  +  G  + +D           +   +V         V
Sbjct: 219 VNGVEESLARVLERGCWSEVEQ-FGVGDWRESDAAAT---AAPGKDAFDVWFGDAVQGTV 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V    G H   N L  +     +      AI++LS F   +   +R       G  T+ D
Sbjct: 275 VWDLQGTHNRMNALAAIAAARHVGVPAAQAIESLSRFANVK---RRMEVRGVAGGVTVYD 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNIS 402
           + +  +P +++  +  L      G+ R +AVL    E    +    +  A++  SL    
Sbjct: 332 D-FAHHPTAIQTTLDGLR--RRVGDARILAVL----EPRSNTMKLGVMKAQLPASLEQAD 384

Query: 403 HVWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            V+  G    A KDAL         P        + +  L   ++++   GD V+V  SN
Sbjct: 385 LVFGYG--APAGKDALGWDLAGSLAPLGDKAAAFQDLGTLVQAVRAAAQPGDHVLVM-SN 441

Query: 454 SCGFY----RLINLL 464
             GF     +L++ L
Sbjct: 442 G-GFGGVHQKLLDAL 455


>gi|87199446|ref|YP_496703.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135127|gb|ABD25869.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 475

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 113/374 (30%), Gaps = 37/374 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GK+T   M    L+   +    I +    +   +           G  E  +S
Sbjct: 123 VAVGGTSGKSTVTGMTGWILTYAGRDP-TIMN-GAVMKNFVAPDAPFASARVGKGEAFVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + E      L  P IAV+  ++  H      +EE+     +    L +  T  +N DD 
Sbjct: 181 EVDESDGSIALYNPAIAVLNNVSLDH----KSLEELRELFGDF---LARADTAVVNADDP 233

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--- 287
               L  ++         +FG S  AD  +         + +   +  +     H     
Sbjct: 234 ESLALIGRA-----GRAVTFGISSEADISVEHGSIAEGPTSIGATVIDRRDASRHPLTLK 288

Query: 288 -IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +   +     V  A+   +     EG  +R+           + + +
Sbjct: 289 IPGRHNLANALAAVAAANAAGLSVAEAV---ASLVGFEGLARRFDIVGTSASGVTVIDDF 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL--GDMCEMGELSQSFHIDLAEVLSLYNI--- 401
             NP  + A +S L        GR IA         + ++       +A  L   +I   
Sbjct: 346 GHNPEKVGATLSTLKA----HPGRVIAFFQPHGYGPLRQMGAELAEVMARTLDANDISVL 401

Query: 402 -SHVWLSG-----FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              V+  G          + D +        Y          I      GD VV+  +  
Sbjct: 402 CDPVYFGGTVDRSVGSERIVDLIRSHGGKAEYIAERTDCATRIAQLARPGDRVVIMGARD 461

Query: 455 CGFYRLINLLLEEF 468
                    LL+  
Sbjct: 462 DTLSAFARDLLQAL 475


>gi|296284500|ref|ZP_06862498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 123/385 (31%), Gaps = 59/385 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    +        +PV G  +       L   AR       ++ ITG+ GK+TT  
Sbjct: 73  GVPLNTHPIKPHADKFGVPVIGDIE-------LFAQAREHLPPHKVVGITGTNGKSTTTA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L    KT     +   +IG+P+       +    + EL    +     LT  +  
Sbjct: 126 LTHHIL----KTAGVPTTMGGNIGLPILGQEPLPEGGVYVLELSSYQID----LTFSLDC 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVI  I P HL  +   E  A AK  + +         +   D    L          
Sbjct: 178 DVAVILNITPDHLDRYESFEAYAEAKLRLSDLQSAGRPTVI--GDEVLGLW--------- 226

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   +   +        C      E  L G+S      G   H ++N+     + S
Sbjct: 227 --------NPGRNVAPEDLWVCDR----EYPLPGQSNWPTLQGP--HNSENVDAAGCLAS 272

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +     +AL  F     R +R      +     +++S   N A+   A++   +I 
Sbjct: 273 QLGIEDAVIDQALRTFPGLPHRMERV---GERAGVLYVNDSKATNTAAAAPALAAFEKI- 328

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    V G   E G      H        + +++  +  G    A  DAL     V
Sbjct: 329 ------HWIVGGQAKEPGLGETEQH--------IGHVTAAYTIGEAGDAFADALAPHCPV 374

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
               T+D        +   G+ V++
Sbjct: 375 SRCGTLDIAVHTAALAAKPGETVLL 399


>gi|325662354|ref|ZP_08150963.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471356|gb|EGC74579.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 450

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 112/354 (31%), Gaps = 45/354 (12%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K Y        +IG P T A +   +    + E+    L  I        P +
Sbjct: 125 ALLGEIMKAYRDSVFVVGNIGTPYTGASLEMKEDSVTVAEMSSFQLETIDTF----HPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +E    AK EI +   +     LNY+D        K H      
Sbjct: 181 SAILNITPDHLNRHHTMEAYIQAKEEITKNQTEEDVCVLNYEDEVLRAFGEKLHT----Q 236

Query: 247 IYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  F   +  +    L   K        EV  + +        +G H  +N++    + +
Sbjct: 237 VLYFSSRRKLERGIYLEDGKIIYADGKPEVLCKVEE----LKLLGTHNYENVMAASAMAA 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                + +  + +  F        R      +      ++S   NP +   A+  ++   
Sbjct: 293 AYGVPLSSIRETIRNFGGVA---HRIEFVAEKEGVAYYNDSKGTNPDAAIKAVEAMN--- 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                R   ++G   +       +     E      + ++ L G     + +   R    
Sbjct: 347 -----RPTILIGGGYDKNSSYDEWIDSFGE-----KVRYLVLVGATKEKIAETARRKGFD 396

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +V  ++T +   +       +GD V++    +S             F  L+N L
Sbjct: 397 NVILADTFEEAVMESARLAREGDAVLLSPACASWGMFKNFEERGDKFKELVNHL 450


>gi|291003737|ref|ZP_06561710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 479

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 115/379 (30%), Gaps = 42/379 (11%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A        R    AT +A+TG+ GKTTT  ML   L +        G+    +  
Sbjct: 105 DQEKANEPADSTGRPAGPATWLAVTGTNGKTTTVGMLESILRADGVDVVACGNVGLPVVD 164

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +              EL    L      +  V PH +V+  +A  HL     ++   +A
Sbjct: 165 AV-----RAGHRVLAVELSSFQL----HWSQTVAPHASVVLNLAADHLDWHGSLDAYGAA 215

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
           KA ++ G         N DD +   L         + + ++          +        
Sbjct: 216 KARVYAG---NSVAVHNADDEWSVRLADAGAPQQARRVSFTLSDPAPGVLGVESGALVDR 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                V+L   +     H  G H   N L    +      + +   + L  F        
Sbjct: 273 AFGDRVRLAAVA---DVHPAGPHNVANALAAASLARAYGVEPEAVAEGLRSFQ---PGAH 326

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R          + +D+S   NP +  AA+             ++  +      G   +  
Sbjct: 327 RSVVVAESAGVSYVDDSKATNPHAADAALRA---------HPKVVWIAGGLLKGADVEDL 377

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDG--LFLFIQ---SS 440
                   +   ++ V L G       +AL R    + V   E+ D   +   ++     
Sbjct: 378 VA-----ANAARLAGVVLIGRDRARFAEALARHAPDVPVREVESGDDAGMLAAVRLAGEF 432

Query: 441 LVDGD-VVVVKSSNSCGFY 458
              G  VV+  ++ S   +
Sbjct: 433 AEPGCAVVLAPAAASMDMF 451


>gi|110802290|ref|YP_699487.1| cyanophycin synthetase [Clostridium perfringens SM101]
 gi|110682791|gb|ABG86161.1| cyanophycin synthase (L-aspartate-adding) [Clostridium perfringens
           SM101]
          Length = 874

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 131/382 (34%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTLAR- 155
           S   +I++TG+ GKTTT  +++  L+ I     C  +    I               AR 
Sbjct: 476 SNIPVISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNKYIHKGDDTGYNSARS 535

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
             +  +VD  + E   +  G +R         + VIT I   HL     + +E+++  K+
Sbjct: 536 VLLNPEVDIAVLE--SARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRKWKQC 266
            + E ++  G   +N DD +   +  +      K    F  ++N      + +L      
Sbjct: 594 LVGEAVKDNGYSVINADDEWSLKVLDRIK----KPKILFSMNENNKYLQENLKLENPIVF 649

Query: 267 SEQSWMEVQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                + V+ +GK          +   +G   H  +N +     +  +  D     K L 
Sbjct: 650 YRDETIYVKNRGKEYKIASAEDMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLK 709

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            F   E   + R+      G   ++D  Y  N    K  I  L  +        I V GD
Sbjct: 710 KFKSCEEDNRGRFNMFDVNGVNVILD--YGHNIDGYKVVIDSLKNLGFKNITGIIGVPGD 767

Query: 378 -----MCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHY 426
                M E+G++S  F   +   E   L         G     + + +     + ++V  
Sbjct: 768 RDLNTMKEVGKISGDFFDSIVIKEDKDLRGKDK----GEVASIINEGVLSSNRKDLNVKI 823

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
             + +            G+ ++
Sbjct: 824 ILSEEEALRETLKLAKKGETII 845


>gi|161525944|ref|YP_001580956.1| UDP-N-acetylmuramate [Burkholderia multivorans ATCC 17616]
 gi|189349337|ref|YP_001944965.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343373|gb|ABX16459.1| UDP-N-acetylmuramate [Burkholderia multivorans ATCC 17616]
 gi|189333359|dbj|BAG42429.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 125/370 (33%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +       +  EV   
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+ +
Sbjct: 278 VQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGSVDGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P +++  I+ L         R +AVL    E    +    +  A++  SL +   V+
Sbjct: 334 AHHPTAIETTIAGLRARIGRQNSRILAVL----EPRSNTMKLGVMKAQLPASLADADLVF 389

Query: 406 LSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L DAL P        + +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAQAARPGDHVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|121608457|ref|YP_996264.1| UDP-N-acetylmuramate [Verminephrobacter eiseniae EF01-2]
 gi|121553097|gb|ABM57246.1| UDP-N-acetylmuramate [Verminephrobacter eiseniae EF01-2]
          Length = 491

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 136/407 (33%), Gaps = 55/407 (13%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLAR-- 155
            +A +L     ++A+ G+ GKT T  ML   L    +     IG    + G+   L    
Sbjct: 102 WLAEQLLPGRHVLAVAGTHGKTGTSSMLAWILECAGQQPGFLIGGVPLNFGLSARLGAPQ 161

Query: 156 --MPVDVDFG-----IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
             +P     G     + E            +  V  RP  AV+  +   H   F+ +  I
Sbjct: 162 RPLPAPAPLGATPLFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLAAI 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-----KSHALGIKTIYSFGKSKNADFQLR 261
                 +   +  +G + +N  D+    +       +    G+ T+ +FG    + F   
Sbjct: 222 ERQFHHLVRTMPASGRVVVNGLDASLARVLQMGCWSQVTRFGVDTMSAFGAEGTSAFGAE 281

Query: 262 KWKQCSEQ---SWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                  +      +V  QG+ +  V     G H   N L  +     +  D   A  AL
Sbjct: 282 TISAFGAEGPPQSFDVTHQGQKLARVEWALTGVHNQLNALAAIAAAQHVGVDPGQAAAAL 341

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--- 374
           + F   +   +R       G   + D+ +  +P++++  +  L + S     R +AV   
Sbjct: 342 ATFRNVK---RRMELRGIVGGVAVYDD-FAHHPSALRTTLDGLRR-SLGAGARILAVFEP 396

Query: 375 ------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHV 424
                 LG M      +          L   +++    +G    A +   P      +  
Sbjct: 397 RSNTMKLGTMKSRLPWA----------LEPADLAFCLTAGLDWDAAQALAPLGVGPGLRA 446

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
             +     L   +  +   GD VV   SN  GF     +L+  L ++
Sbjct: 447 QTAPDSATLLAQVTQAARPGDHVVCM-SNG-GFDAMPAKLLQALQKQ 491


>gi|189220257|ref|YP_001940897.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
           infernorum V4]
 gi|189187115|gb|ACD84300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
           infernorum V4]
          Length = 442

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 103/334 (30%), Gaps = 50/334 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               + +TGS GK+TT  ++   L          G+       P  L     +    + E
Sbjct: 112 PGKTVGVTGSKGKSTTSSLIYHLLKEGGFKAYLGGNIGIP---PFHLLPFADEKAIAVLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL- 225
           L    L   +       P IA+   +   HL+     E  A AK+ I             
Sbjct: 169 LSSYQLEYCKH-----SPAIALWLNLFHEHLNYHGSFEAYAQAKSHIGRFQSPKDYFIYD 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D +    L ++    GI                    +   +S +++           
Sbjct: 224 PGDQALELFLLSQEKMPGIPLPV----------------EGKGRSQVDLS--------RL 259

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L    +  +L    +   +ALS F    G   R       G  +  ++S
Sbjct: 260 GIPGRHNKKNALFAARVALLLGMPAEAISEALSSF---RGLPHRLEYVATVGGISYYNDS 316

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +  P +  A I  +  +       R  ++G      +      +  A + ++  +  + 
Sbjct: 317 ISTVPEATLAGIEAIPSV-------RTLIVGGQ----DRGVDLGLFCARLCTVQELETLI 365

Query: 406 L---SGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           L   +G+ +  L   +    ++   ++++     
Sbjct: 366 LLPETGWRIGFLLKEMGFKKNLFLVKSLEEAVEL 399


>gi|237749090|ref|ZP_04579570.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380452|gb|EEO30543.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 126/363 (34%), Gaps = 34/363 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
              ++ + G+ GKTTT  ML   L     +    IG    + G+   L     +  F + 
Sbjct: 102 DKWVLGVAGTHGKTTTTSMLAWILEDAGYSPGFLIGGVPLNFGISARLHG-EKESSFFVI 160

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  A++  +   H   FS I  I +    +   +   G +
Sbjct: 161 EADEYDTAFFDKRSKFVHYRPKTAILNNLEYDHADIFSDISAIETQFHHLVRTVAGNGRL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  +   E +  +      +    FG      + + +        + + Q QG    V
Sbjct: 221 IVNNREPALERVVERGCWSEKE---WFGDEGKDSWSMAEKDDDDFDVFFDGQYQG---TV 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +    + +I +LS F   +   +R  C  N G  T+ D
Sbjct: 275 HWDLTGEHNRLNALAAIAAARHVGVRPEQSIDSLSRFKNVK---RRMECRGNVGGITVYD 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRI-AVL----GDMCEMGELSQSFHIDLAEVLSL 398
           + +  +P ++   I+ L + +    G+RI AVL      M  +G + Q+    L E    
Sbjct: 332 D-FAHHPTAIATTIAGLKKKTASVPGQRILAVLEPRSNTMK-LGVMKQALPQSLQE---- 385

Query: 399 YNISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                V+  G             +  LP          +D L   I  +   GD V+V  
Sbjct: 386 --ADMVFAYGADGGKNGLGWDLEQALLPLGDRAKAFSDIDRLVDEIIMAAQPGDHVLVM- 442

Query: 452 SNS 454
           SN 
Sbjct: 443 SNG 445


>gi|224826076|ref|ZP_03699179.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
 gi|224601713|gb|EEG07893.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
          Length = 455

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 136/431 (31%), Gaps = 57/431 (13%)

Query: 33  DSRSIAPQEAF-------FAIKGPHYDGHDFILH---AVQKGAGLVVVNTDMVASIGSLS 82
           DSR   P  A         A+K   +D   F       V  G  +           G   
Sbjct: 35  DSRDNPPNAATLAESLPGVALKTGAFDATTFAGAEMLVVSPGVAVATPAIAAFRRAGGE- 93

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                V DV     +L   A   S + +IAITGS GK+T   ++              G+
Sbjct: 94  ----VVGDV-----ELFARAIAGSGSKVIAITGSNGKSTVTSLVGHLCRQAGLDTVLAGN 144

Query: 143 YNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               +   L          D  + EL    L      T  +    A +  I+  HL  ++
Sbjct: 145 IGLPVLDALGEREASGKRPDVWVLELSSFQL----ETTTSLNADAATVLNISEDHLDRYA 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            + + A +K  +F G    G   LN DD+    +    HA        F   + AD+ LR
Sbjct: 201 DLLDYAHSKTAVFNG---RGVQVLNRDDALVRAMVRPGHAQR-----WFSLKETADYALR 252

Query: 262 KWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +     +     + + G+++         G H A N L  L +   +       ++ L  
Sbjct: 253 Q-----DAGRYWLTVAGEAVFDCAEMSLQGLHNAANALAALALTEAIGLPRAALLEGLKT 307

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G   R            ID+S   N  + +AA++             + + G   
Sbjct: 308 FT---GLAHRVEFVAEVHGVRYIDDSKGTNVGATEAALN-------GMTRPVVLIAGGDG 357

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQ 438
           +  + S        +         V L G     ++  L    + +    T++       
Sbjct: 358 KGQDFSP------LKPACARIARAVLLIGRDAGKIRAVLEGLPLPIVDCATLEEATREAA 411

Query: 439 SSLVDGDVVVV 449
                GDVV++
Sbjct: 412 RLAEAGDVVLL 422


>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
 gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
          Length = 453

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 121/348 (34%), Gaps = 34/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +KA I AITGS GKTT   ++ +      ++ A  G+    IGVP     +  + D  
Sbjct: 105 EEAKAPIAAITGSNGKTTVTTLVGLMAERCGRSAAVGGN----IGVPALDLLLEPEPDMY 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L        ++    A +  I+  H+  +  +     AK  IF   +K    
Sbjct: 161 VLELSSFQL----ERADVLGFEAATVLNISADHMDRYPDLSTYRRAKYRIFNHCKKK--- 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D       A  +      + SFG  +     L+ +          +  Q + +  
Sbjct: 214 IINRADPL-----AAPYCGEDLDVLSFGLDRPG---LKGFGLIDVNGVEYLAYQTEPLMA 265

Query: 284 V--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V     +G H  +N L  L +   +  ++    + LS F    G   R +          
Sbjct: 266 VGALKMVGRHNIENALAALALGFAMGLELSLMTEVLSEFS---GLDHRCQLVGEYQQIKY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +  AAI  L+ ++     + I + G   +  + S      L  VL  +  
Sbjct: 323 YNDSKGTNVGAAIAAIEGLAAVAK----KVILIAGGEGKGADFSP-----LLPVLKQF-A 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     L       I    + +M           V GD V++
Sbjct: 373 RAIVVIGEASEQLLKLCGDEIIALRASSMQQAVEKAAMLAVSGDAVLL 420


>gi|77361222|ref|YP_340797.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876133|emb|CAI87355.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 451

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 144/409 (35%), Gaps = 33/409 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +   L   + ++AI G+ GKTTT  ML  
Sbjct: 64  MVVIGNAMSRGNPCVEYVLDKGLPYTSGPEWLKHNLLQNSWVLAIAGTHGKTTTASMLAW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + GV   +   P    F + E            +  V   P 
Sbjct: 124 ILEYAGLKPGFLIGGIVQNFGVSAKVGETP----FFVIEADEYDTAFFDKRSKFVHYLPR 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +  I      +   + ++G +    DD     +  +       
Sbjct: 180 TLILNNLEFDHADIFEDLNAIKKQFHHLIRTVPQSGKVIWPKDDQALSDVITQG------ 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            ++S  ++   D+     K  ++ S  +V L  +    V    +G H  +N +M +    
Sbjct: 234 -LWSESETLGIDWNYELIK--ADGSEFKVFLNNEKQGTVNWQAMGEHNVKNAIMAIAAAR 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +   V+ +I AL  F   +   +R     +     + D+ +  +P +++  ++ L   +
Sbjct: 291 HVGIAVEHSIAALGEFISPK---RRMELKADINNIKVYDD-FAHHPTAIQTTLAGLR--A 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDALPRSI 422
             G  + IA+L       ++    H  LA   SL +   V L        +L +    + 
Sbjct: 345 KVGSDKIIAILEPRSNTMKMGVHQHTLLA---SLSDADEVLLFEPENLSWSLSEQAATAG 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFY-RLINLLLEEF 468
              ++ T   +   +  ++     +++  SN    G + +L++ L  ++
Sbjct: 402 MQCFTST-QVIIDTVLDNIAANQHILIM-SNGSFNGLHQQLVDALANKY 448


>gi|226357935|ref|YP_002787675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (MurE synthetase) (UDP-N-acetylmuramyl-tripeptide
           synthetase); Mur ligase family protein; Cyanophycin
           synthetase [Deinococcus deserti VCD115]
 gi|226320178|gb|ACO48171.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (MurE synthetase)
           (UDP-N-acetylmuramyl-tripeptide synthetase); putative
           Mur ligase family protein; putative Cyanophycin
           synthetase [Deinococcus deserti VCD115]
          Length = 724

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 124/388 (31%), Gaps = 57/388 (14%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPL 151
           RS+  I+A+TG+ GK+TT  M+   L+    T     +   ++                 
Sbjct: 324 RSRIPILALTGTNGKSTTARMVAHILAHAGHTVGFTNTSGVYVADKRIHSGDATGPKSAR 383

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASA 209
            + R P  V   + E   +  G +R      R  +  +  +   H  L   + + ++A  
Sbjct: 384 MVLRHPA-VTVAVLE--TARGGLLREGLGFDRADVGAVLNVKSDHLGLGGVNTVRDLARV 440

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--------LR 261
           K+ +   +  +G   LN DD     ++  +         S G   N   +          
Sbjct: 441 KSLVVRVVASSGLSVLNADDPLTLGMRRVARGRIALFSIS-GLDGNKALRDHIDAGGLAV 499

Query: 262 KWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
             +  ++   + V   G+         +     G+     +N L    +   L   ++  
Sbjct: 500 VCEPQADGDVIAVYDGGERQSLMRAADIPATLGGLARFNVENALAAAAMCLGLDLTLEVI 559

Query: 314 IKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             AL+ F    E    R       GF  ++D  Y  NP ++ A  ++L ++     GR I
Sbjct: 560 RSALTTFTSSFEQSPGRLNVHDAHGFRVILD--YAHNPDALAAQRALLHRLR-SPGGRLI 616

Query: 373 AVLGDMCEM-GELSQSFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDAL 418
                M  + G+       ++ E+ +      V+  G                   + A 
Sbjct: 617 ----GMVSVPGDRRDDDIREVGEIAAGTFDELVFREGPDGRGRPRGETMSLMAEGARSAG 672

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             S  +H             +    GD+
Sbjct: 673 FASERIHLVLEESDAVDATLNLARPGDI 700


>gi|312874653|ref|ZP_07734677.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325912989|ref|ZP_08175362.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
 gi|311089883|gb|EFQ48303.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325477669|gb|EGC80808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
          Length = 460

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 127/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +             +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  +L    + +F  +S  AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSLTKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|309809977|ref|ZP_07703825.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308169765|gb|EFO71810.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 460

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 127/347 (36%), Gaps = 34/347 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
           A  + +TGS GKTTT  +    + +             +IGVP++   +  +  D  + E
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLVVE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +    L       + ++P +A I  I    H+      E   +AK  I +  +K+     
Sbjct: 173 ISSFQLMG----VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIA 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+D    + +  +  ++    + +F  +S  AD+ + +    S+     +++        
Sbjct: 229 NFDQ---KNILEQELSITKANVVTFSEESTQADYYIGEQYLESQADHEIMKISD------ 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L+ + I  I+ A  +     LS F    G   R +  +      + ++
Sbjct: 280 IKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFT---GAKHRLQYVMTYNNRRIYND 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +   AI   SQ         + + G +            +L  +L   ++  +
Sbjct: 337 SKSTNIEAASVAIPSFSQPE-------VLIAGGLDRGFTF-----DELVPLLKK-HVKAI 383

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     L DA  ++    +    T+            DGDV++ 
Sbjct: 384 VLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLF 430


>gi|256825187|ref|YP_003149147.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688580|gb|ACV06382.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
          Length = 908

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 122/363 (33%), Gaps = 55/363 (15%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F    VL  L      AR      I+A+TG+ GKTTT  M+   +           + 
Sbjct: 465 PQFIAKPVLDLLFPPGSRAR----VPIVAVTGTNGKTTTSRMVGHIMRGSGHHVGMTSTD 520

Query: 144 NNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              I   L + R                VDF + E+     G IR      R  +AV+T 
Sbjct: 521 GVVIDERLVIKRDASGPKSARTVLQHPRVDFAVLEVA--RGGIIREGLGFDRTDVAVVTN 578

Query: 192 IAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           +   HL       +E++A  K+ I   + ++G   LN DD     ++ +        +  
Sbjct: 579 VTADHLGLGGVDTVEQLAEIKSVIVSAVPRSGYAVLNADDPLVRDMRHRCRG----QVVW 634

Query: 250 FGKSKNA-------DFQLRK-----WKQCSEQSWMEVQLQGK---------SMEVVHHGI 288
           F  ++         D +L +       + +E+    V  +GK         ++   + G 
Sbjct: 635 FSLAEPGSKERNFIDRRLLRGGRAVLLEQTERGERIVLAEGKRWMPLTWTHTIPATYGGA 694

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N +   G      A +      L  F   +      R    +     +   Y  
Sbjct: 695 ARFNVANAMAAAGAAWSAGAPLHDIRAGLRSF-APDYYLSPGRLNRVEVNGAEVYVDYAH 753

Query: 349 NPASMKAAISVLSQISPH-----GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           NPA ++A    ++  +        E +RI VLG     G+   S   +L EV +      
Sbjct: 754 NPAGLQALSEFVANRAMSLAEGGEEPQRIVVLGA---AGDRRDSDVRELGEVAAQ-QFDT 809

Query: 404 VWL 406
           V +
Sbjct: 810 VVI 812


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 162/484 (33%), Gaps = 75/484 (15%)

Query: 29  GISID-SRSIAPQEAFFAIKGPHY---D--GHDFILHAVQK------GAGLVVVNTDMVA 76
           GISID +    P     A +       D  G DF+   + +      GA   V       
Sbjct: 415 GISIDRTFEAHPDNIDIAEEAARVVGLDIAGIDFLCPDITQPVRETGGAICEVNAAPGFR 474

Query: 77  SIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                +I  P +    V+  +      AR      I+A+TG+ GKTT   M+     S+ 
Sbjct: 475 MHTHPTIGDPQYVAKPVVDLMFPPGSNAR----IPIVAVTGTNGKTTCSRMIGHIFKSMG 530

Query: 135 KTYACIGSYNNHIGVPLTL---------ARM---PVDVDFGIFELGMSHLGEIRFLTHLV 182
           +      +    I   L +         ARM      VDF +FE+     G +R      
Sbjct: 531 RKVGMTSTDGVVIDDRLVIRSDASGPRSARMVLQNPRVDFAVFEVA--RGGILREGLGYP 588

Query: 183 RPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           R  +AV+  +AP HL       +E++A  K  I E + K+G+  LN DD     ++    
Sbjct: 589 RNDVAVVLNVAPDHLGLRGIDTVEQLAQVKQVIVEAVPKSGSAVLNADDPLVAGMRRACS 648

Query: 241 ALGIKTIYSFGKSKN----ADFQLRK----WKQCSEQSWMEVQLQGKS---------MEV 283
                 +  F    +    +D   R       + S+   + V + G+          +  
Sbjct: 649 G----EVVWFSTEPDNRMISDHCRRGGKAVILERSDLGELIVLVHGRRRMPLAYTHLVPA 704

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLI 342
              G      QN +          A +      L  F P       R      +G   ++
Sbjct: 705 TFGGKAMFNVQNAMAAAAAAYCAGAHLGDIRGGLRSFTPSYYSAPGRMNLTEVRGVKVIV 764

Query: 343 DESYNANP-ASMKAAISVLSQISPHGEG-RRIAVLG--------DMCEMG-ELSQSFHID 391
           D  +NA    ++ A +    + S   E  +RI V+         DM ++G E ++ F   
Sbjct: 765 DYCHNAPAMVALGAFVDRFFEDSASWERPQRIGVIATAGDRRDQDMIDLGLEAAKHFDRI 824

Query: 392 LA---EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGD 445
           +    E L          +G  V   K+A  +   V   E                  GD
Sbjct: 825 IVREDERLRGRAPGE--TAGLIVQGAKEAQAQGGRVKQIEVVLDEIEATKVAVEWANPGD 882

Query: 446 VVVV 449
           +V+V
Sbjct: 883 LVLV 886


>gi|94498175|ref|ZP_01304736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
 gi|94422305|gb|EAT07345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
          Length = 443

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 133/386 (34%), Gaps = 45/386 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    +        +P+ G  +       L   AR       ++ ITG+ GK+TT  
Sbjct: 73  GVPLNRHPINMRAKLAGVPIIGDIE-------LFALARPTLPPHKVVGITGTNGKSTTTA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   +          G+    I     L          + EL    +     LTH +  
Sbjct: 126 LIHHIIEQAGYPTVMGGNIGLPILSQPPLEPNLKGAGVYVLELSSYQID----LTHSLDC 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+  I P HL  + G E   ++KA +F          +  +D         S ++  
Sbjct: 182 DVAVLLNITPDHLDRYDGFEGYVASKARLFAMQSAGHKAVIATEDE-------PSRSVST 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +   + G  ++        +  S Q     QL   +++      G H AQN+ + +   +
Sbjct: 235 QICDTKGSGEDV------VEVASTQVDTTEQLAWPALQ------GPHNAQNVAVAMVTAA 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  D    +   +          R +          +++S   N AS   A+   +   
Sbjct: 283 VLDIDP---VTTKAALASYASLPHRMQTVRTLNGVLYVNDSKATNAASTAPAL---AAWP 336

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIH 423
                 RI  +     +G +++S ++D  E    + N++H +  G       D L   + 
Sbjct: 337 AKDGKPRIHWI-----LGGVAKSENLD--ECAPHFGNVAHAYTIGEAGHMFADLLRPHMA 389

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V  SE +             GDVV++
Sbjct: 390 VDDSEMLSAAVRRAARIAQPGDVVLL 415


>gi|58337117|ref|YP_193702.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus NCFM]
 gi|227903691|ref|ZP_04021496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
 gi|62900453|sp|Q5FKV3|MURD_LACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58254434|gb|AAV42671.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           acidophilus NCFM]
 gi|227868578|gb|EEJ75999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 459

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 130/391 (33%), Gaps = 53/391 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L IP+    +V  AL+         S A  + ITGS GKTTT  +  
Sbjct: 83  IPYENPMVKKAEELDIPIITEPEV--ALSC--------SDAPYVCITGSNGKTTTVMLTQ 132

Query: 128 IAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             L             +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 RILDHHLQKTGHHAYAVGNIGVPISEVVPKATKD---DILVVEISSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +A I  I    HL      E    AK  +            N+D    + + AK   +
Sbjct: 186 PKVAAIVDIYNNVHLDYHKTFENYVDAKLNVTRTQNSDDYFIANFDQ---KDILAKEKEV 242

Query: 243 GIKTIYSFGK-SKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + +F +   NAD+ +  ++ +  ++  M++              G H  QN L+ +
Sbjct: 243 SPAKMQTFSETDHNADYFIGDEYLESQDEKIMKI--------ADIKLPGVHNLQNSLVAI 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I  ++ AD +     LS F    G   R +         + ++S + N  +   AI   
Sbjct: 295 AIAKLMGADNEDIAAVLSTFT---GAKHRLQYVTTLDGRKIYNDSKSTNIEAATVAIPAF 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +         IA        G L + F  D    L   ++  + L G     L DA  +
Sbjct: 352 KEPEV-----LIA--------GGLDRGFTFDDLVPLFKKHVKSIVLYGETKYLLADAARK 398

Query: 421 S--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +    T+             GDV++ 
Sbjct: 399 AGIKEIVIVNTLQEAVPRAYELTEPGDVILF 429


>gi|309806679|ref|ZP_07700675.1| Mur ligase family, glutamate ligase domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166984|gb|EFO69167.1| Mur ligase family, glutamate ligase domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 268

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 102/291 (35%), Gaps = 37/291 (12%)

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T +   H   F   ++ ASA     E  +K   +F+  DD+    ++           Y
Sbjct: 1   MTNVDFDHPDYFKDRDDYASAFQTAAEQTKKG--LFVWGDDTRLNDIQVSIPK------Y 52

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILT 307
           ++G +   DFQ    ++    S  +V+     + +   H  G H   N    + +  I  
Sbjct: 53  TYGFNNTDDFQAYDIQKNITGSTFKVKYHDIELGQFEIHLFGDHNILNTTAVIAVAYIEK 112

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D      +     +G  +R+    + G   +ID+ Y  +P  MKA +    Q  P+ 
Sbjct: 113 ESLDLV---RAALLTYKGAKRRF-SEKSYGKINIIDD-YAHHPTEMKATLQAARQKYPN- 166

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFH--------VLALKDAL 418
              +I V          +  F     E+L   + ++V  + G             L   +
Sbjct: 167 ---KILVAIFQPHTYSRTAEFADQFVEILKTADYAYVTPIFGSARENHGNISSQDLTKRI 223

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSCGFYRLI-NLLLEE 467
           P S  V   + +  L  F        D V+V   +     Y +    LLE+
Sbjct: 224 PNS-EVISLDNIADLTKF-------KDAVLVFMGAGDITKYEVAYEALLEQ 266


>gi|124385257|ref|YP_001027261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10229]
 gi|254178784|ref|ZP_04885438.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 10399]
 gi|254202762|ref|ZP_04909125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei FMH]
 gi|254208104|ref|ZP_04914454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei JHU]
 gi|124293277|gb|ABN02546.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10229]
 gi|147747009|gb|EDK54086.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei FMH]
 gi|147751998|gb|EDK59065.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei JHU]
 gi|160694698|gb|EDP84706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 10399]
          Length = 504

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSAQLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 255 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
 gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
          Length = 462

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 116/397 (29%), Gaps = 47/397 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG VV++  +     +L         V G ++    A R       I ITG+ GKTT   
Sbjct: 70  AGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALR---GIPWIGITGTNGKTTVTH 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +L   L+         G+            L       D+ + E+    +         V
Sbjct: 127 LLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQI----EAAAEV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I + TT+ P HL     IE   + K  +   LE++    LN DD+            
Sbjct: 183 SPRIGIWTTLTPDHLERHGTIEAYRAIKRGL---LERSEIPVLNADDADIRQHCGHWSRS 239

Query: 243 GIKTIYS-----FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            I+ +        G +       + W    EQ                   G H  QNML
Sbjct: 240 CIRWVSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFPAD--------SLPLPGEHNRQNML 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +             T   AL  F        R     + G   + ++S   N  +    +
Sbjct: 292 LVTAAALAAGVSASTIEAALRCFTGVP---HRLEPLGSVGGIPVFNDSKATNYDAAAVGL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +           + + G   + G+            L    ++ V L G     L D 
Sbjct: 349 RSVQA-------PVVLLAGGQTKKGDAVPWL------KLIQSQVAGVVLFGEGAGELADL 395

Query: 418 LPRSIHV---HYSETMDGLFLF---IQSSLVDGDVVV 448
           +  S       +   +D        +  +     V++
Sbjct: 396 IETSGFAGPMIHCADLDSAVSQALSLARNCQANSVLL 432


>gi|206900214|ref|YP_002250973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
 gi|206739317|gb|ACI18375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
          Length = 456

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 124/343 (36%), Gaps = 31/343 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIA+TG+ GK+TT  ++   L +        G+        +   +      + + E+ 
Sbjct: 111 PIIAVTGTKGKSTTTTLIGEVLKNANIPNIVAGNIGLPFVSVVKNLK----EGYFVLEIS 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L +I       RP I++   I P HL  +S ++E   AKA IF   +K     LN+D
Sbjct: 167 SFQLEDIEEF----RPFISLFINIYPDHLDRYSNMDEYILAKARIFMNQKKEDYAILNHD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               E++K   H    K  + F K +        +++   + +  +  +   + +     
Sbjct: 223 QE--EIVKLAKHYEVRKLFFGFNKHEEEGLF---YEEDKNKIFYNLSDRRGFLNIPKGIW 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +  N + +  +  +L    +   K    F       ++            +++S   
Sbjct: 278 NRILVNNFMASALVGLLLGVREEVIEKTGEEFQGIPFALQKI---GEINGRIFVNDSKAT 334

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S  +AI  ++          + +LG     G        +L E +    +  + L G
Sbjct: 335 NPISTISAIKSINS-------PILLILG-----GRNKNFDFQELFENIKKTTVKALILIG 382

Query: 409 FHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV 449
                +K+ L     + Y   ++++            GDV+++
Sbjct: 383 ETKEVMKN-LSEEYDIPYVLSDSLESAVKKAYEMSQPGDVILL 424


>gi|121611477|ref|YP_999284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
 gi|121556117|gb|ABM60266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
          Length = 638

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 129/453 (28%), Gaps = 76/453 (16%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-------------KLAVA 101
            F+  A   G         +  S G     V  V     A                  + 
Sbjct: 163 RFVPGAFDAGLVEGQNLHAVYCSPGLSPSAVAAVAQTCSAHGIGMGGELDLYALALAGLR 222

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A      T++AITG+ GKTT   +    L    ++ A  G+    +   L    +     
Sbjct: 223 AADGYAPTVLAITGTNGKTTVTALTGQLLQRAGRSVALAGNIGPTLLDTL-AGHIDAGTL 281

Query: 162 FG--IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    L      +    P  A +  I+  HL     +   A+AKA IF     
Sbjct: 282 PAVWVLELSSFQL----ERSTGFEPTAAALLNISQDHLDWHGDMAAYAAAKARIFGQ--- 334

Query: 220 TGTIFLNYDD-----------------SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           T  + LN  D                        AK+ A   +   +FG    A      
Sbjct: 335 TALMVLNRQDAAVMQVSAPSAPSAPVTPALRPRAAKAPAPQPRADITFGADMPARAGDFG 394

Query: 263 WKQCSEQSWM-------------------------EVQLQGKSMEVVHHGIGYHMAQNML 297
            +      W+                         E+Q+Q           G H A N L
Sbjct: 395 IELVGGMPWLVRASAADETQRARRRPGPPGAVPAQELQIQRLIPADALRIRGRHNAVNAL 454

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +       +   +          G   R             D+S   N  +  AAI
Sbjct: 455 AALALACAAGCPLAPMLYG---LRAYRGEPHRVESVACIDGVEFFDDSKGTNVGATVAAI 511

Query: 358 SVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             L      G GRR + ++G   +  + +      LA  L+  +   V L G     ++ 
Sbjct: 512 DGLGAQGGPGAGRRLVVIVGGQGKGQDFAP-----LAAPLA-RHARAVLLIGCDAPLIRA 565

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           AL    + +  + T+ G           GD V+
Sbjct: 566 ALQDIGVPLLDAPTLPGAVELAAQHAQPGDAVL 598


>gi|304413641|ref|ZP_07395085.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Regiella insecticola LSR1]
 gi|304283732|gb|EFL92126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Regiella insecticola LSR1]
          Length = 509

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 131/379 (34%), Gaps = 61/379 (16%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++  I+AITGS GK+T   +L     +        G+        LTL +        
Sbjct: 131 RENQVPIVAITGSNGKSTVTTLLGEMARNAGWQVGVGGNIGIP---ALTLLKQK--YQLI 185

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++  +A I  I+  H   +  G+E+  +AK  I+E      T
Sbjct: 186 VLELSSFQL----ETTYSLQAQVATILNISEDHSDRYPQGLEQYQAAKLRIYEN---AHT 238

Query: 223 IFLNYDDSFFE------------LLKAKSHALGIKTIYSFGKSKNADFQ----------- 259
             +N DD+  +            +L+  +   G +T        +A+ +           
Sbjct: 239 CVVNVDDALTKPKQDTNAHYIPTVLQVAARRPGRETDERRQLRDSANARSQQRGSFEGEG 298

Query: 260 -------LRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                  +  +    +Q+ + +Q  G+ +         G H   N L  L +        
Sbjct: 299 YSSFGVDVGDYHLHKQQNTVWLQAHGEKVLETSKMKLCGRHNHINALAALALADAAGIPR 358

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +++   +V         R++        + I++S   N  S KAA+  L+      EG 
Sbjct: 359 SSSL---AVLTTYSRLAHRFQSVFKNKGISWINDSKATNVGSTKAALEGLA-----IEGT 410

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              +LG   +  + S        E +       ++  G     L    P       ++T+
Sbjct: 411 LYLLLGGDGKSADFSPLLPFLQGERI------RIYCFGRDGQKLAQLRPEISQC--TDTL 462

Query: 431 DGLFLFIQSSLVDGDVVVV 449
                 +   LV GD+V++
Sbjct: 463 QQAMRLLAPQLVTGDLVLL 481


>gi|325106851|ref|YP_004267919.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967119|gb|ADY57897.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 443

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 122/393 (31%), Gaps = 64/393 (16%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+++  +  +   +   V     VL  +         R+ A ++A++G+VGK+T   
Sbjct: 77  CDAVLISPGIRPNHPCVQAAVEEGIPVLTEMQ----LFLERNPAPVLAVSGTVGKSTVTT 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG---EIRFLTHL 181
           ML   L    ++    G+    +   L         D  + EL    L    E++     
Sbjct: 133 MLAHVLKESGRSVHVGGNLGLSLLPELD---CIQPDDVVVLELSSFQLHWLQEMQPRFEG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V     ++T + P HL       E  +AK  +  G +      L  +       + K+  
Sbjct: 190 V-----IVTNLFPHHLEWHGSSGEYETAKQVMLAGQQAQDWAVLPAELQLRPGWQGKAET 244

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +                          V L   S+         H  +N    L 
Sbjct: 245 GSPVNV--------------------------VALSEVSVPSDWPL---HWQENTASVLA 275

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L      A + L  +     R ++ R    +    +ID+S   +P +  A +  + 
Sbjct: 276 AAVRLGVSPAQAAECLKSYQGLPHRLQQVRIWQGR---RIIDDSKATSPWATLAGMRAMR 332

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVL----ALKD 416
           +           +LG     G  S     +L   L     +  + L G        A++ 
Sbjct: 333 ESF-------WLILG-----GAASSDDPAELLAALPDVPLLRGIALMGPGGKLWGEAVRR 380

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A+   + V   E+      +   +   G+ +++
Sbjct: 381 AVEAGVQVEQFESQHEACRWAAKASQAGETILL 413


>gi|187925394|ref|YP_001897036.1| UDP-N-acetylmuramate [Burkholderia phytofirmans PsJN]
 gi|187716588|gb|ACD17812.1| UDP-N-acetylmuramate [Burkholderia phytofirmans PsJN]
          Length = 464

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 125/372 (33%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G +  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLGAIETQFHHLIRTVPGIGRVVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E +  +        +  FG                 E     V      + VV 
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWQTLPAEDGVPVDE--RFAVYHNSARVGVVE 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 277 WQVQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVK---RRMEVRGSVDGVTVYDD 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P ++   ++ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 334 -FAHHPTAIDTTVAGLRARVGRHNTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 388

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P        + +D L   +  +   GD ++V  SN  G
Sbjct: 389 VFGYGAPSGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHAARPGDQILVM-SNG-G 446

Query: 457 FY----RLINLL 464
           F     RL++ L
Sbjct: 447 FGGVHQRLLDAL 458


>gi|76809096|ref|YP_334867.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710b]
 gi|76578549|gb|ABA48024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710b]
          Length = 494

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 129 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 184

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 185 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 245 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 300 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 356

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 357 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 411

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 412 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 469

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 470 FGGVHQKLLDALSA 483


>gi|289668052|ref|ZP_06489127.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 452

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 131/373 (35%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV    A
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVS---A 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           R+    +F + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 149 RLGQGCEF-VVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMG---CWTPVERFGFDASLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L  V  +  D    + AL+ F   +   +R  
Sbjct: 263 AVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVHAVGVDPAMVMPALARFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              N    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGNAHGVTVYDD-FAHHPTAIA---TTLQGLRAKVGAARVVV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P    V    H +  +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGDAHVAHDVDALLQTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|254299315|ref|ZP_04966765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 406e]
 gi|157809086|gb|EDO86256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 406e]
          Length = 504

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 255 GRDDALERVLSRG---CWSDVERFGVDGG--WQASPVENGVPVDGRFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|85373184|ref|YP_457246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
 gi|84786267|gb|ABC62449.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
          Length = 459

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 122/391 (31%), Gaps = 62/391 (15%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    +V   G   +P+ G  +       L   AR       +I ITG+ GK+TT  
Sbjct: 73  GVPLNTHPIVERAGHFGVPIIGDIE-------LFAQARSALPPHRVIGITGTNGKSTTTA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L          G+    I     L     +    + EL    +     LT  +  
Sbjct: 126 LVTHLLKEAGVEARMGGNIGLPILGEEPL----PEGGVYVLELSSYQID----LTRSLAC 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A +  I P HL  + G E  A +K  +F             +D+    +   + +   
Sbjct: 178 EAAALLNITPDHLDRYDGFESYAFSKGRLFTMQGSGQFACFGCEDAQTRAVCNAAQSR-- 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                         +      C E       +QG          G H  QN+   + +V 
Sbjct: 236 --------------RAEGRAICLEPEQY-AAMQGD----WPALQGPHNLQNVAAAIALVE 276

Query: 305 ILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +     D +  + + S      G   R            +++S   NPAS       L+
Sbjct: 277 EMGVTRGDWEAGLTSYS------GLPHRMEVVCEHESVLFVNDSKATNPASTA---PALA 327

Query: 362 QISPHGEGRRIAVLGDMCE---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                 E R   ++G + +   +GE                NI   +  G       + L
Sbjct: 328 AWPADPEPRVHWIVGGLAKEDGLGECEAQL----------GNIKRAYAIGEAGPRFAELL 377

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + V  SE +        S+   GD+V++
Sbjct: 378 GGRVPVERSELICEAVKQAVSNAEAGDIVLL 408


>gi|134102301|ref|YP_001107962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914924|emb|CAM05037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 469

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 115/379 (30%), Gaps = 42/379 (11%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A        R    AT +A+TG+ GKTTT  ML   L +        G+    +  
Sbjct: 95  DQEKANEPADSTGRPAGPATWLAVTGTNGKTTTVGMLESILRADGVDVVACGNVGLPVVD 154

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +              EL    L      +  V PH +V+  +A  HL     ++   +A
Sbjct: 155 AV-----RAGHRVLAVELSSFQL----HWSQTVAPHASVVLNLAADHLDWHGSLDAYGAA 205

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268
           KA ++ G         N DD +   L         + + ++          +        
Sbjct: 206 KARVYAG---NSVAVHNADDEWSVRLADAGAPQQARRVSFTLSDPAPGVLGVESGALVDR 262

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                V+L   +     H  G H   N L    +      + +   + L  F        
Sbjct: 263 AFGDRVRLAAVA---DVHPAGPHNVANALAAASLARAYGVEPEAVAEGLRSFQ---PGAH 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R          + +D+S   NP +  AA+             ++  +      G   +  
Sbjct: 317 RSVVVAESAGVSYVDDSKATNPHAADAALRA---------HPKVVWIAGGLLKGADVEDL 367

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDG--LFLFIQ---SS 440
                   +   ++ V L G       +AL R    + V   E+ D   +   ++     
Sbjct: 368 VA-----ANAARLAGVVLIGRDRARFAEALARHAPDVPVREVESGDDAGMLAAVRLAGEF 422

Query: 441 LVDGD-VVVVKSSNSCGFY 458
              G  VV+  ++ S   +
Sbjct: 423 AEPGCAVVLAPAAASMDMF 441


>gi|254490663|ref|ZP_05103848.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophaga thiooxidans DMS010]
 gi|224464119|gb|EEF80383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophaga thiooxydans DMS010]
          Length = 449

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 131/372 (35%), Gaps = 41/372 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTTT  +L   L     +    IG   ++ G    L + P    F + E  
Sbjct: 105 VLAVSGTHGKTTTSSLLAWILEHAGMSPGFLIGGVPDNFGETARLGKTP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVRP--HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V       VI  +   H   F  +  I      +   +   G I   
Sbjct: 161 EYDTAFFDKRSKFVHYLARTLVINNLEFDHADIFDDLAAIQKQFHHLIRTVPSEGLIISP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + +  ++L                    +D+Q    K  ++ S  EV   GK+  V   
Sbjct: 221 QEKAIEQVLAMGCWTPRQ------SLGNESDWQATLLK--NDGSEFEVSFAGKTGTVNWS 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  +     +   V  A +ALS F   +   +R           + D+ +
Sbjct: 273 MLGQHNVNNALAAIAAAHHVGVTVAHACEALSAFAGVK---RRLELRGEVDNIRVYDD-F 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLA---EVLSLY 399
             +P ++   I+ L   +  G  + +AVL      M  MG    +    L     VL L 
Sbjct: 329 AHHPTAIATTIAGLR--AKIGNKKLVAVLEPRSNTMK-MGVHQDALAQSLIQADRVLLLQ 385

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY- 458
           +    W        L D      HV   +++D +   +Q+    GD +VV  SN  GF  
Sbjct: 386 DSDLKWSLKQVTDELGD------HVSVFDSIDTIVKTLQTEAQQGDEIVVM-SNG-GFGG 437

Query: 459 ---RLINLLLEE 467
              R+++ L + 
Sbjct: 438 IHQRILDALEQR 449


>gi|83719762|ref|YP_441715.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
 gi|83653587|gb|ABC37650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
          Length = 470

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 127/374 (33%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPSVGRLVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E + ++        +  FG                 E     V  + + +  V 
Sbjct: 221 GREDALERVLSRG---CWSDVERFGVDGGWQALPAEDGVPADE--RFAVYWRSERVGAVD 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 276 WHVQGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVK---RRMEVRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRARIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   +  S   GD V+V  SN  G
Sbjct: 388 VFGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLVM-SNG-G 445

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 446 FGGVHQKLLDALSA 459


>gi|115372723|ref|ZP_01460029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823490|ref|YP_003955848.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370204|gb|EAU69133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396562|gb|ADO74021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 454

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 117/358 (32%), Gaps = 33/358 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++ +A+R  S   +  ITG+ GK+TT  +     S         G+       P + A 
Sbjct: 99  GEVELASRFLSAVPLFGITGTNGKSTTTALTGELFSRGGGRTFVGGNLGR----PFSEAA 154

Query: 156 MPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +  +     + EL    L  I+ +    R   A I  + P H+  +        AK  IF
Sbjct: 155 LTPEAWDALVVELSSFQLEGIQQM----RARGAAILNLTPDHIDRYESHAAYGQAKTRIF 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWM 272
                     +N DD     L  ++        Y F  + N   +  +   +  +++   
Sbjct: 211 LNQGVGDFAVVNVDDPDVVGLARQARVPR----YGFSLTGNP-VEALELAGRAVAQEGGF 265

Query: 273 EVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +    ++  + +  + G H AQN +    +  +     +      +      G   R  
Sbjct: 266 RLDFLKETYSLTNRALRGAHNAQNAMAATLLARLGGVPREAV---QAGLDGYPGLPHRLE 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     +++S   N  S+  A+   +       G  + + G     G+   + +  
Sbjct: 323 SVRVLDGVEWVNDSKATNVDSVLVALRAFA-------GNLLLIAG-----GKGKGAPYQP 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +      +  V   G     L  A   +  VH   T++      +     GD V++
Sbjct: 371 MVDE-GRGKVKAVLTIGQDAELLAAAYREAAPVHACGTLEVAVRRARELAKGGDTVLL 427


>gi|187479352|ref|YP_787377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           avium 197N]
 gi|118595642|sp|Q2KVF5|MURD_BORA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115423939|emb|CAJ50491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bordetella avium
           197N]
          Length = 508

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 127/387 (32%), Gaps = 51/387 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+    AL  LA A        ++A+TG+ GKTT   +    + +   +    G+ +   
Sbjct: 113 VELFARALASLAEA--RAYHPRLLAVTGTNGKTTVTALTRQLIEACGLSARAAGNISPAA 170

Query: 148 GVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
              L  A +  D   D  + EL    L      TH ++   AV+  +   HL     ++ 
Sbjct: 171 LASLMEA-LDQDALPDVWVLELSSFQL----ETTHSLQADAAVVLNVTQDHLDWHGDMQA 225

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------- 258
            A AKA +   L+      +N DD     + A  + L ++   SFG+             
Sbjct: 226 YAQAKARL---LKMARVAIVNRDDPLTLAMVADVNGLNVR---SFGRDLPQRVGDMGLEL 279

Query: 259 -QLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGI----------VSI 305
            Q   W    E S  +  V  + K       G G       +  L I           ++
Sbjct: 280 GQGVAWLVACEPSDFDEPVVRRKKDAPPPQRGEGRMSRLMPVDALRIRGVHNALNALAAL 339

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQI 363
             A V        +   ++  G+ +R A  +  G    I++S   N  +  AA+  L Q 
Sbjct: 340 QLARVLELGWGPMLRALRDYAGEPHRAAFVRSIGGVDYINDSKGTNVGATVAALEGLGQT 399

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                   + + G   +  + S              +   V L G    A+   L    +
Sbjct: 400 -------VVLIAGGQGKGQDFSP------LRSAVSRHARAVVLIGADGPAIGQVLESTGV 446

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  +  M             G+ V++
Sbjct: 447 ALVVAADMREAVRRAAEIAQAGEAVLL 473


>gi|73542546|ref|YP_297066.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia eutropha JMP134]
 gi|72119959|gb|AAZ62222.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia eutropha JMP134]
          Length = 457

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 123/372 (33%), Gaps = 40/372 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +     ++    + DF + E   
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAG---YNPGFLVGGVPQNFGISARVTESDFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  ++ I +    +   +   G + +N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLDAIETQFHHLVRTVPGQGRLVVNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEVV 284
                  L           +  FG     D++         +   +V         +   
Sbjct: 222 ---LEASLARVIERGCWSEVEQFGVG---DWRESDAGTDDGKDAFDVWFGDAVQGRVSWD 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +   V  AI++L  F   +   +R          T+ D+
Sbjct: 276 LQ--GTHNRMNALAAIAAARHVGVPVAQAIESLGRFANVK---RRMEVRGVAAGVTVYDD 330

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  +  L      G  R +AVL    E    +    +  A++  SL     
Sbjct: 331 -FAHHPTAIQTTLDGLR--RRVGGARILAVL----EPRSNTMKLGVMKAQLPASLEQADL 383

Query: 404 VWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L  AL P          +  L   ++++   GD V+V  SN  G
Sbjct: 384 VFGYGAPSGKDALGWDLAGALAPLGKKAAAFHDLGALVEAVRAAAQPGDQVLVM-SNG-G 441

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 442 FGGVHQKLLDAL 453


>gi|268319706|ref|YP_003293362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
 gi|262398081|emb|CAX67095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
          Length = 460

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 129/390 (33%), Gaps = 50/390 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L IPV    +   ALN              + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVEKAEKLDIPVIT--EPEIALNVSEAPY--------VCVTGSNGKTTTVMLTQ 132

Query: 128 IA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 LS        +G+    I   +  A      D  + E+    L         ++
Sbjct: 133 RIMDHHLSKNGGHAYAVGNIGVPISEVVEKATSK---DLLVVEMSSFQLLG----VTDIK 185

Query: 184 PHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +A I  I    HL      +    AK  I +  ++      N+D    + +  K    
Sbjct: 186 PKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANFDQ---KNILEKELDK 242

Query: 243 GIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + +F +  K AD+ +      S+     +++            G H  QN L+ + 
Sbjct: 243 TKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISD------IKIPGIHNQQNCLVAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I  +++AD      ALS F    G   R +  +      + ++S + N  +   AI    
Sbjct: 297 ISKLMSADDSDIQYALSTFT---GATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFK 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +         IA        G L + F  D    L   ++  + L G     L DA  ++
Sbjct: 354 EPEV-----LIA--------GGLDRGFMFDSLVPLFKKHVKSIVLYGETKYLLADAARKA 400

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++    T+             GD+++ 
Sbjct: 401 GIKNIVIVNTLQEAVPRAYELSEAGDIILF 430


>gi|167895945|ref|ZP_02483347.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 7894]
 gi|167920543|ref|ZP_02507634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei BCC215]
          Length = 504

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  + + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSYFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 255 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|53720587|ref|YP_109573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Burkholderia pseudomallei
           K96243]
 gi|52211001|emb|CAH36989.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei K96243]
          Length = 494

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 129 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 184

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 185 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 245 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 300 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 356

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 357 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 411

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 412 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 469

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 470 FGGVHQKLLDALSA 483


>gi|309802481|ref|ZP_07696587.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220881|gb|EFO77187.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 496

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 122/369 (33%), Gaps = 45/369 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV ++ +      +       + ++   ++  + A L      + + G+ GKTTT 
Sbjct: 63  GARTVVFSSAIKPDNPEIVAAYEAGERIV---HRSDILALLMQSKRAVTVAGAHGKTTTS 119

Query: 124 EMLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            ML   L +         +YA  GS     G  L            + E   S     ++
Sbjct: 120 SMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGS-VLVAEADESDGSFAKY 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P IA+IT     HL ++    +  +A  E          + +  DD     +  
Sbjct: 179 -----HPEIAIITNAEADHLDHYGTEAKYRAAFVE--HAGRAGKAVIMCGDDDGALAVLR 231

Query: 238 KSHALGIKTIYSFGKSKN---------ADFQLRKWKQCSEQS--WMEVQLQG-------K 279
                  + +  +    +         A  ++    + ++       + L         +
Sbjct: 232 ALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESAQSGTEHFILHLPAGLVDVEER 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G H A+N    L    +L  DV+ A  A + F    G  +R++   +    
Sbjct: 292 RVPVTLTVPGIHNARNATAALLATVMLGVDVERAAAAATSFL---GAARRFQIRGSVNQV 348

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID+ Y  +P  + A +    +  P      I        +   +  F  + AE L+  
Sbjct: 349 TVIDD-YAHHPTEIAALLDAARRRYPEAGIHVIF----QPHLFSRTMFFAREFAEALAK- 402

Query: 400 NISHVWLSG 408
               V ++G
Sbjct: 403 -ADDVIVTG 410


>gi|198282931|ref|YP_002219252.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668082|ref|YP_002425134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247452|gb|ACH83045.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520295|gb|ACK80881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 455

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 119/353 (33%), Gaps = 30/353 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  +LT  L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTTSILTWILQEAGLDPGFLIGGEARNFGVSARLT----DSPFFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  +E I +    +   +   G I + 
Sbjct: 161 EYDTAFFDKRSKFVHYHPRSLILNNLEYDHADIFPDMEAIITQFHHLLRTVPGAGAIIVK 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285
                 + +  +     ++     G+ +    +L       + S   V  QG +  +V  
Sbjct: 221 DGVPALKRVLERGCWTPLQRFAGTGEWQ---VRLDAV----DGSRFTVLEQGVERGQVGW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G   A+N L  L         +       +     +G  +R       G   + D+ 
Sbjct: 274 EMAGSFNAENALAALLAARHAGVPL---AVGCAALRSFQGVRRRLELRGRAGGVAVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++ A I+ L      G  R IAVL    E    +     H   L   L   + +
Sbjct: 330 FAHHPTAIAATITALRG-RMEGTERLIAVL----EPRSNTMKMGVHRQTLGPSLQGADRA 384

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            V+        +  AL  +  V+    MD L   + + L  GD V++  SN  
Sbjct: 385 FVYAPADLGWDVAAALDSAAQVYV--DMDALLRALDAELRPGDDVLIM-SNGA 434


>gi|127514072|ref|YP_001095269.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
 gi|126639367|gb|ABO25010.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
          Length = 479

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 139/408 (34%), Gaps = 33/408 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +A  + +   ++A++G+ GKT+T  ML  
Sbjct: 87  LVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILTNRWVLAVSGTHGKTSTSSMLAW 146

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    + GV   L     D  F + E            +  V  +P 
Sbjct: 147 ILEDCGYAPGFLIGGVPQNFGVSARLG----DSPFFVVEADEYDSAFFDKRSKFVHYQPR 202

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             VI  +   H   F  ++ I      +   +   G +           +         +
Sbjct: 203 TLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGQGKVIWPSASDAVREVIDMGCWSEQE 262

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
              ++     +     +     +    E+   G+S  V+    IG H  +N  M +    
Sbjct: 263 ---TYNLMAGSPGWYSEL-LSEDGHSFELFFDGESQGVLDWSLIGQHNVENATMAIAAAR 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      AI+AL+ F P +   +R           + D+ +  +P ++   +      +
Sbjct: 319 HVGVKPAAAIEALTRFAPPK---RRMELIGTVNDIAVYDD-FAHHPTAIATTLQGCR--A 372

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRS-I 422
             GEGR I VL        + +  H D LA  ++L + ++++ +      ++ A+ ++ +
Sbjct: 373 KVGEGRIIVVLE--PRSNTMKRGVHKDTLAGSMALADAAYLYQADNIDWDVEAAMAKAEL 430

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS----------CGFYRL 460
            V     +D L   + ++   GD ++V  SN                +
Sbjct: 431 PVTVLYQIDELADSVTAAARPGDTIIVM-SNGGFGGLHGKLLAKLEEI 477


>gi|293400553|ref|ZP_06644698.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305579|gb|EFE46823.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 437

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 110/350 (31%), Gaps = 42/350 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  ++ +  T   IG              MP D ++ + E        + +     +P
Sbjct: 121 MISHVMAEVAPTGFLIGDGTGD---------MPDDGEYFVLESCEYQRHFLAY-----KP 166

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I   H+  +  +E+   A       ++K   I L  DD     L  K+  L  
Sbjct: 167 QYAIITNIELDHVDYYKDMEDYRDAFETFANQVKKG--IVLFGDDQEVRRLHVKTKHL-- 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
                +G   + D Q     Q  E    +V  +           +G  +  N L  + + 
Sbjct: 223 ----YYGLQDDNDVQAVHVIQNEEGMSFDVLYKKAYFGSFKLPFVGKPLLWNSLGVIALG 278

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +         + L+ F   +   +R+      G   +  + Y  +P ++K  I      
Sbjct: 279 IMEGLQPAVLQEGLASFPGVK---RRFTIEEKNGNVYI--DDYAHHPTAVKYMIEAAR-- 331

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------LKD 416
             + + + IA+     +       F    A+ L   + +++     +          ++D
Sbjct: 332 IKYPDKKIIAIFK--PDRYSRIYYFMDRFAQELDQADETYLCHFPENAAKEPGINITIQD 389

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYRLINLLL 465
              R  H    +  +    F+        V +  SS        ++    
Sbjct: 390 LADRCAHAQVIQEDETAAKFLADRGPA--VYLFMSSKDIYKLKNIVKSFQ 437


>gi|126440835|ref|YP_001060472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 668]
 gi|126455119|ref|YP_001067736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106a]
 gi|167825874|ref|ZP_02457345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 9]
 gi|167847357|ref|ZP_02472865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei B7210]
 gi|167912589|ref|ZP_02499680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 112]
 gi|226196829|ref|ZP_03792408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242317055|ref|ZP_04816071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106b]
 gi|254190965|ref|ZP_04897471.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199141|ref|ZP_04905556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei S13]
 gi|254258821|ref|ZP_04949875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710a]
 gi|126220328|gb|ABN83834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 668]
 gi|126228761|gb|ABN92301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106a]
 gi|157938639|gb|EDO94309.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pasteur 52237]
 gi|169656971|gb|EDS88368.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei S13]
 gi|225931089|gb|EEH27097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242140294|gb|EES26696.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106b]
 gi|254217510|gb|EET06894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710a]
          Length = 504

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 255 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 449

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 122/361 (33%), Gaps = 39/361 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +L +AAR   KA ++AITG+ GKTTT  ++     +        G+    +   +T  
Sbjct: 93  IGELELAARF-IKAPVVAITGTNGKTTTTSLIGEIFRNNGIKTLVAGNIGLPL---VTEV 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E+    L      T   RP++AVI  I P HL   + ++  A AKA I+
Sbjct: 149 EKYGPGDIIVAEVSSFQL----ETTVHFRPNVAVILNITPDHLDRHATMQNYAQAKANIY 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQS 270
           +    +    LNYDDS    L  K        +  F +    D     +  +     +  
Sbjct: 205 KQQLSSDYTVLNYDDSLTASLAVKVPG----RVIFFSRKHILDRGVFVRNEEIIAALDGD 260

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +    +         G H  +N L ++    +L          L  F   E    R 
Sbjct: 261 ETAICRVDE-----VKIPGAHNLENALASVAAGFVLGVGRQVLANTLKTFPGVE---HRL 312

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   NP +    +   SQ         + + G   + G   + F  
Sbjct: 313 EFVAEINGVRYINDSKGTNPDAAVKGLQAYSQ-------PIVLIAGGRNK-GSDFKEFMQ 364

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 +   +  + + G     L +A       +V  +            +   GDVV+
Sbjct: 365 -----AAKEKVRTMVVLGECAQELLEAAQAVGFGNVIQATDFISAVKLAAQTARSGDVVL 419

Query: 449 V 449
           +
Sbjct: 420 L 420


>gi|330469053|ref|YP_004406796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Verrucosispora maris AB-18-032]
 gi|328812024|gb|AEB46196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Verrucosispora maris AB-18-032]
          Length = 449

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 127/397 (31%), Gaps = 45/397 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
                + A   VV            +       V   + +             + +TGS 
Sbjct: 63  EEGFARLAAADVVVRSPGVPQTHPWLVELRRRGV--TITQGTALWMADHGDRTVGVTGSK 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  ++   L+++ +     G+                + +  + EL      ++  
Sbjct: 121 GKSTTSSLIHHLLTAMDRPNVFGGNIGVPTLD-------LPEAELYVLELSSYQCSDL-- 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P +AV+T + P HL    G  E    K  +     +  T+ +N  D        
Sbjct: 172 ---TDSPRVAVVTALFPEHLDAHGGEREYYRDKLNLIAYGPR--TVVVNGADPRL----- 221

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  LG +     G + +            + + W  +  +      V   +G H   N+
Sbjct: 222 -AFELGDRAAIRAGTADS-----VNVAGGPDGTPWFHLVDRPLFPRAVLPLVGRHNEGNL 275

Query: 297 LMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            + L ++  L  DV    D    A++ F    G   R    ++    T +D++   +P +
Sbjct: 276 CVALAVLDALGVDVVGRKDALAVAVAEFQ---GLAHRLTEIVDPSGLTFVDDTLATSPYA 332

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              AI          EGR + V+    + G         LAE      +  +  SG  ++
Sbjct: 333 AIHAIDA-------YEGRPLTVIVGGNDRGVDYTPLREHLAE--RELTVIGIPDSGPRII 383

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                LP+ +     + +       +     G VV++
Sbjct: 384 EALAGLPK-VRTDLVDDLAAAVQLARQVTPVGGVVLL 419


>gi|242278169|ref|YP_002990298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121063|gb|ACS78759.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           salexigens DSM 2638]
          Length = 434

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 135/387 (34%), Gaps = 57/387 (14%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA ++V +  +         P  G       +++L +A+   ++   IAITG+ GKTTT
Sbjct: 77  AGADVIVASPGIP---ARNIAPFIGNLPERAIISELELASWFANEPK-IAITGTNGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L    +T     +Y   +   +         D  + E+    L   R    L 
Sbjct: 133 TALIKHILEESGRTAFAGANYGTPLSEFIYE---DGKADVLVLEVSSFQLQNCR----LF 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP  A++  I+P HL+    ++E   AK +IFE   +     L  D              
Sbjct: 186 RPQAAILLNISPNHLNYHEDMDEYLQAKLKIFERQSEDELAILPADMK------------ 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                   G+   A F   + K             G + E   +  G H   N+      
Sbjct: 234 --------GELDPASFTKAEVK----------WFDGSTFEEQPNLPGKHNCLNIEAAWLA 275

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +    +     +  F  K     R +   +      I++S   N  +++AA++    
Sbjct: 276 LEKIGLTREEFEAGMKTFVGKP---HRIQDIGSVDGIRFINDSKGTNLDAVRAALNSF-- 330

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G    +LG + + G++ +              ++ V L G      + AL    
Sbjct: 331 -----DGPVRLLLGGVFKGGDVRE------IIPAMRGKVAEVGLFGAGREHFEPALKDEF 379

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + + E ++     + ++   GD +++
Sbjct: 380 KISWHENLEKAVRALFANSKAGDTILL 406


>gi|62900690|sp|Q83GN2|MURD_TROWT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 480

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 143/417 (34%), Gaps = 59/417 (14%)

Query: 64  GAGLVVVNTDMVASIGSLSI----------PVFGV--DDVLGALNKLAVAARLRSKATI- 110
           GA  V    D +  +    I          PV     D  +  L+++ +A R+R K    
Sbjct: 61  GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRDKVNTC 120

Query: 111 --IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             I ITG+ GKTTT  +    L+      A  G+    +   +   R P   D+ + EL 
Sbjct: 121 PWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGTPVLDAV---RNPKGFDYLVVELS 177

Query: 169 MSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L  +       V+   +    +   HL      E    AK+ ++ G   TG    N 
Sbjct: 178 SFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYCAKSRVYHG--TTGFCVYNL 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQG 278
           DD   + +  ++          FG            +     R +    + S +E+    
Sbjct: 236 DDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGILCDRAFLSARKDSALEITSVE 295

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K  +        H+  ++L  + +   +  +  +  +AL  F        R      +  
Sbjct: 296 KLEKNKLSM--RHIISDVLCAVALARSVETNPLSISRALDEFCLSP---HRTEVVAKEMG 350

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEV 395
              +++S   NP ++ A++S  S        R I + G + +  ++S     F+      
Sbjct: 351 VMWVNDSKATNPHAVIASLSNFS--------RVILIFGGLMKGVDVSGIFDRFYE----- 397

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS---SLVDGDVVVV 449
                I  V + G +   + +   + I V   ++ D +   + +       GD V++
Sbjct: 398 ----TIKAVVVIGKNQSFVGNIKCKKI-VCIPDSNDPMSEAVAAADLLATPGDTVLL 449


>gi|114564396|ref|YP_751910.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
 gi|114335689|gb|ABI73071.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
          Length = 479

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 133/368 (36%), Gaps = 34/368 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 109 VLAVAGTHGKTSTSSMLAWVLEYCGYEPGFLIGGVPQNFGVSARLG----NSVFFVVEAD 164

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G +   
Sbjct: 165 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQRQFNHVIRTVPGEGKVIWP 224

Query: 227 YDDSFFELLK-----AKSHALGIKTIYSFGKSKNA-DFQLRKWKQC--------SEQSWM 272
            D    + +      ++       T  + G ++++ +    + +           +    
Sbjct: 225 SDVEAVQQVIDMGCWSEQEIYSKATSLTTGLAEHSVNVSANQGEPNAWQPRTIADDGHEF 284

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           EV  +G+S  +V    IG H  +N +M +     +      AI+AL+ F P +   +R  
Sbjct: 285 EVLFKGESQGIVNWSLIGQHNIENAIMAIAAARHVGVAPSHAIEALAQFSPPK---RRLE 341

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLS---QISPHGEGRRIAVLGDMCEMGELSQSF 388
                   ++ D+ +  +P ++   +  L      S +  G  I VL        +    
Sbjct: 342 LLATVNGVSVYDD-FAHHPTAIATTLQGLRAKVASSDNANGNIIVVLE--PRSNTMKSGV 398

Query: 389 HID-LAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDV 446
           H D LA  + L ++ +++ +      +K ++  + I V     ++ +   + ++   GD 
Sbjct: 399 HKDTLANSMVLADVGYLYQADNIDWDIKASMANAPIPVTVFNNIEDIINAVAATANQGDT 458

Query: 447 VVVKSSNS 454
           VV+  SN 
Sbjct: 459 VVIM-SNG 465


>gi|254526648|ref|ZP_05138700.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538072|gb|EEE40525.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 468

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 139/390 (35%), Gaps = 44/390 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + A L    T  A+ GS GKT+T   L+  L       + I      I        
Sbjct: 104 HRSEILAMLMETYTAFAVAGSHGKTSTSTFLSTILELCTHDSSSITGGIIPIYNSNCHLE 163

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + E+  S  G I    +  +  I +I  I   H  +FS + E+ S+     +
Sbjct: 164 ---NTKYLVAEVDESD-GTI----NQYKSDIGIINNIDFDHCDHFSDLNEVISSFRSFAK 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K   + LN+D           +     + +S   +KN  + +   +  S+ +  +  
Sbjct: 216 NSKK---LLLNFDCETSR------NNFFSNSKWSNTTTKNVAYAIIPTQINSKYTIGKYY 266

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G  +  +     G H   N+   +    ++  D     + +      + R + +R  +
Sbjct: 267 EHGNFVSNLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKRNIKYLKLPKKRFE-FRGQI 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSF 388
           N+    L+ + Y  +P  +K  I +          +   + R IA+           + F
Sbjct: 326 NE---RLLYDDYAHHPNEIKETIKLGKLFIKQKHNNECQKSRLIAIF--QPHRYSRVKQF 380

Query: 389 HIDLAEVLSLYNISHV---WLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQ 438
             + AE LS  ++ +V   + +G           + D +  ++ +V Y      +     
Sbjct: 381 TKEFAEELSKADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCYINNYHKITENFY 440

Query: 439 SSLVDGDVVVVKSSNSCG-FYRLINLLLEE 467
                GD+++   +  C  F+ +   L E+
Sbjct: 441 ELTQKGDLILNMGAGDCHDFWSI---LKEK 467


>gi|134280443|ref|ZP_01767154.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 305]
 gi|237813866|ref|YP_002898317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei MSHR346]
 gi|134248450|gb|EBA48533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 305]
 gi|237503744|gb|ACQ96062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei MSHR346]
          Length = 504

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 255 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|257867498|ref|ZP_05647151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257873827|ref|ZP_05653480.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
 gi|257801554|gb|EEV30484.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257807991|gb|EEV36813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
          Length = 455

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 122/352 (34%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITG+ GKTTT  M+   L++  +    + S N       ++A+     D
Sbjct: 109 AYQISEAPIIGITGTNGKTTTTTMIANVLNAGMQKGQALLSGNIGFPAS-SVAQTAKAED 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I  L    RP IAVIT I  AH+       E   AK  + + +    
Sbjct: 168 RLVMELSSFQLMGIDTL----RPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTADD 223

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGK 279
            + +N++    E L AKS A     I  F   +     + L       E+  M       
Sbjct: 224 YLVINWNQPELEALSAKSKA----QIIPFSTKEKVAGAYMLDGILYYKEEVIMAAD---- 275

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +     +   +AL  F        R +  +     
Sbjct: 276 ----ELGVPGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVP---HRTQYVITINQV 328

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+             ++ +L    + G            V +L 
Sbjct: 329 KFFNDSKATNILATEMALGGFDN-------EKLILLAGGLDRGNSFDDL------VPALK 375

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     L  A   +    +  ++ ++       S    GD +++
Sbjct: 376 GLKAIVLFGETKEKLAAAAQAAGVKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|326388916|ref|ZP_08210498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206516|gb|EGD57351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 452

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 134/415 (32%), Gaps = 68/415 (16%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124
           G+ +    + A   +  +PV G  ++  A+       R       ++ ITG+ GK+TT  
Sbjct: 73  GVPLNRHPITAHAAAHGVPVIGDIELFAAI-------RPELPPHRVVGITGTNGKSTTTA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++              G+    +     L          + EL    +     LT+ +  
Sbjct: 126 LVHHICREAGFPARMGGNIGLPVLGEEAL----PAGGVYVLELSSYQID----LTYSLEA 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A +  I+P HL  + G    A++KA +F              D+    +         
Sbjct: 178 DVAALINISPDHLDRYDGFAGYAASKARLFAMQRPDQHAVFGTGDADTGAIADAV----- 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                      A  +  ++    + + +  Q    S++      G H  QN  + + I  
Sbjct: 233 -----------AHVREARFVHRPDPALLSGQADWPSLQ------GPHNLQNAAIAVAIAE 275

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +  A+   ++     G   R    +       +++S   NPAS   A++   +I 
Sbjct: 276 ALG--IAEAVWRPALASFV-GLPHRMERVVEVDGVLFVNDSKATNPASTAPALAAYPRIH 332

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G     +    ++ + +  F           ++   +  G       + L   + V
Sbjct: 333 WICGG-----VPKGDDLDDCAPWF----------DHVVEAYTIGEAGPRFAEILRDHVPV 377

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             SE +        ++   GDVV++    +S             F  ++  L+ +
Sbjct: 378 RRSEMLCDAVRDAMAAAKPGDVVMLSPACASFDQFRDFEARGDAFREIVAALIAD 432


>gi|225389931|ref|ZP_03759655.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
           DSM 15981]
 gi|225044011|gb|EEG54257.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
           DSM 15981]
          Length = 452

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 122/372 (32%), Gaps = 38/372 (10%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  VD+    +      A   S   ++AITG+ GKTTT  +    L +  +    +G+  
Sbjct: 85  VAVVDEAKIPIIGELELAYQSSLGRLLAITGTNGKTTTTALTGEILKAQFEDVYVVGNIG 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                 +            + E+    L  I       RP ++ I  I P HL+    +E
Sbjct: 145 EPYTAKVETMTAESVT---VAEVSSFQLETI----LDFRPEVSAILNITPDHLNRHKTME 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                K  I     +   + LNYDD        +S  L  + I+   + K  D       
Sbjct: 198 NYIQIKEAITLNQTEEDAVVLNYDDPVLREF-GESGELKPRVIWFSSREKLKD------G 250

Query: 265 QCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            C     +     G+          H +G H  +N++    +   +   ++   + +  F
Sbjct: 251 FCMNGDTIVYCKSGRETPVINVHSMHLLGRHNYENVMAAAAMSMQMGVPLEKITQVIRDF 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P E    R      +      ++S   NP    AAI  L  +     G  I + G    
Sbjct: 311 RPVE---HRIEFVRERTGVKYYNDSKGTNPD---AAIQALRAMP----GPTILIAG---- 356

Query: 381 MGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFI 437
            G    S + D +AE      + ++ L G     +     +       Y+E +       
Sbjct: 357 -GYDKNSEYDDWVAEF--EGKVRYLILIGQTRDKIAACAKKHGFTEIMYAEDLPEAVQVS 413

Query: 438 QSSLVDGDVVVV 449
                 GD V++
Sbjct: 414 AVYADTGDYVLL 425


>gi|167618637|ref|ZP_02387268.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis Bt4]
 gi|257137883|ref|ZP_05586145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
          Length = 504

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 127/374 (33%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPSVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E + ++        +  FG                 E     V  + + +  V 
Sbjct: 255 GREDALERVLSRG---CWSDVERFGVDGGWQALPAEDGVPADE--RFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WHVQGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRARIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   +  S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|167580528|ref|ZP_02373402.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis TXDOH]
          Length = 504

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 127/374 (33%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPSVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E + ++        +  FG                 E     V  + + +  V 
Sbjct: 255 GREDALERVLSRG---CWSDVERFGVDGGWQALPAEDGVPADE--RFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WHVQGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRARIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   +  S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|167721280|ref|ZP_02404516.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei DM98]
 gi|167817467|ref|ZP_02449147.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 91]
 gi|167904331|ref|ZP_02491536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei NCTC 13177]
 gi|217420664|ref|ZP_03452169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 576]
 gi|254180598|ref|ZP_04887196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1655]
 gi|184211137|gb|EDU08180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1655]
 gi|217396076|gb|EEC36093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 576]
          Length = 504

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV- 284
             D   E + ++        +  FG      +Q    +          V  + + +  V 
Sbjct: 255 GRDDALERVLSRG---CWSDVERFGVDGG--WQALPVENGVPVDGRFAVYWRSERVGAVD 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIETTIAGLRTRIGRENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G          +L DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVM-SNG-G 479

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 480 FGGVHQKLLDALSA 493


>gi|154488891|ref|ZP_02029740.1| hypothetical protein BIFADO_02200 [Bifidobacterium adolescentis
           L2-32]
 gi|154083028|gb|EDN82073.1| hypothetical protein BIFADO_02200 [Bifidobacterium adolescentis
           L2-32]
          Length = 521

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 139/411 (33%), Gaps = 64/411 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KTYACIGSYNNHIGV 149
           ++  + A L +    + + G+ GKTTT  ML   L +         +YA  GS     G 
Sbjct: 117 HRSDILALLMNAKRAVTVAGAHGKTTTSSMLAHILVNAGEGELADPSYAIGGSIQGKDGA 176

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L         +  + E   S     ++      P IA+IT     HL ++   +   +A
Sbjct: 177 ILDGGHAGKG-NVLVAEADESDGSFAKY-----HPQIAIITNSEADHLDHYGTQDNYRAA 230

Query: 210 KAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNAD---------FQ 259
             +       T  + +  DD     +L+A    +  +TI  +     A+          +
Sbjct: 231 FVD--HAGHATKAVIMCGDDEGNLAVLRALDATVAGRTIV-YSTRNAAELGDLNGATLVR 287

Query: 260 LRKWKQCSEQS--WMEVQLQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           +    + +E       + + G       + + V     G H A+N    +   ++L  DV
Sbjct: 288 IESESETAESGAEHFTLHIPGGLIGEEERRIAVTLTVPGIHNARNASAAIIAAALLGMDV 347

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           + A  A++ F    G  +R++        T++D+ Y  +P  + A +    +  P  + R
Sbjct: 348 ERASAAVTSFL---GAARRFQVRGTVSQVTVVDD-YAHHPTEIAALLDAARRRYPQSKIR 403

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-------------FHVLALKDA 417
            I        +   ++ F  + A+ L+      V ++G                  + D 
Sbjct: 404 VIF----QPHLFSRTRFFSSEFAQALAK--ADDVIVTGIFPAREKQEDFPDVTPATIVDE 457

Query: 418 LPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYRLI 461
             +  H      V   E M      +      GDV+    +        +I
Sbjct: 458 ALKLEHEPAKDWVRGVEDMHTAAQMMVMRAHHGDVIFTVGAGDITQMDEVI 508


>gi|87301212|ref|ZP_01084053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
 gi|87284180|gb|EAQ76133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
          Length = 463

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 115/344 (33%), Gaps = 29/344 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +++VA    ++   I ITG+ GKTT   +L+  L+        +G+        L   R
Sbjct: 103 GEMSVAWEASNEIPWIGITGTNGKTTVTHLLSHILNHAGLDAPMVGNVGISAAELLIERR 162

Query: 156 MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D+ + EL    +     L     P + + TT+ P HL     +E   + K  +
Sbjct: 163 EAGATPPDWLVVELSSYQIESSAELA----PRLGLWTTLTPDHLERHGTLEAYRAIKRSL 218

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +     G   LN DD+    L+A + +    T  + G  +     L+ +        M 
Sbjct: 219 LQNC---GEQLLNADDA---DLRAHAGSWDRATWVTAGTRRLLGAGLQPFLWIDGGMVMA 272

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                 S        G H  QNM++       L  +      AL  F     R ++ R  
Sbjct: 273 ASGPLFSA-AALALPGAHNRQNMVLAAATALKLGLEPAVIEAALRSFPGVPHRLEQIRLL 331

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S   N  + +  I+ +       +G  + + G   + G+        L 
Sbjct: 332 ---DGVRWFNDSKATNYDAAEVGITAV-------DGPMVVLAGGEIKQGDPEAWLEA-LG 380

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
              +      V L G    A    L  S +    E ++G    +
Sbjct: 381 RQAAA-----VVLFGAAREAFAALLSGSGYAGTVELVEGQAEAV 419


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 38/306 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLAR 155
           S+  I+AITG+ GKTTT  +++       K      +   +I            P + + 
Sbjct: 486 SRVPILAITGTNGKTTTSRLISHICRQTGKVVGFTTTDGVYIDDYLVEKGDNTGPYSASM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    I  L  +  G +R      +  + V+  +A  HL   +   IE++A  K+ +
Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----E 268
            E +   G   LN DD     +  K        +  F  S +        ++       E
Sbjct: 606 AEVVSAEGYAVLNADDPLTVGMAEKVKG----RVAYFSMSPDNPIIHDHIRRGGMAAIYE 661

Query: 269 QSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             ++ + L+G+         ++ V   G+   M  N L       +   D++   + +  
Sbjct: 662 NGYLSI-LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRT 720

Query: 320 FHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           F P       R           LID  Y  NPA  +A          +  G ++ V+G  
Sbjct: 721 FKPSVAQTPGRMNLFDLGHHHALID--YAHNPAGYEAV----GGFVGNWSGEKVGVVGGP 774

Query: 379 CEMGEL 384
            +  + 
Sbjct: 775 GDRRDD 780


>gi|115350565|ref|YP_772404.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|172059596|ref|YP_001807248.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
 gi|115280553|gb|ABI86070.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|171992113|gb|ACB63032.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
          Length = 461

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 126/372 (33%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
                 E + A+        +  FG                 E     V  Q + + EV 
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDE--RFAVYSQSERVGEVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVK---RRMEVRGSIDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRARIGRQNSRILAVL----EPRSNTMKLGVMKAQLPASLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L DAL P        + +  L   +  +   GD V+V  SN  G
Sbjct: 388 VFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLVM-SNG-G 445

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 446 FGGVHQKLLDAL 457


>gi|289704954|ref|ZP_06501369.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus SK58]
 gi|289558290|gb|EFD51566.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus SK58]
          Length = 495

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 124/392 (31%), Gaps = 39/392 (9%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V   L  L++    A       ++A+ G+ GKTTT  M  +A S           ++  
Sbjct: 98  AVARGLRVLHRSEGLALAMRGHRVLAVAGTHGKTTTSSMAAMAFSDAG--------WDPT 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             V   +A +  +   G  E  ++   E           I ++TT+   HL ++   E +
Sbjct: 150 FAVGAAVAGLGTNARAGRGEWFIAEADESDGTLVNYPSTIGIVTTVEADHLDHYGTEEAV 209

Query: 207 ASAKAEIFEGLEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQ 259
                +   GL      G +    DD+    L A +       + ++G +       D  
Sbjct: 210 HQVFRDFAGGLPAAAQGGVLVACLDDAGAADLAAWARDHAAADVVTYGTATRDGVTPDLL 269

Query: 260 LRKWK----QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +        +         ++  G    +     G H A N    +          + A+
Sbjct: 270 VTDLAVEPGETGVGQRATFRMADGPERTLHLQVPGRHNALNAAAVVLAAVRAGMAFEAAV 329

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + +  F    G  +R+          + D+ Y  +P  + AA+S    ++      R+ V
Sbjct: 330 RGVEAF---RGTARRFEFRGAARGVRVFDD-YAHHPTEVAAAVSAGRAVAGDA---RVHV 382

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDAL--PRSIH 423
           L     +   ++ F  + A  LS  +   V            G     +   L    +  
Sbjct: 383 LFQ-PHLFSRTRDFAAEFAAALSGADAVRVLPVYAAREEPMPGVDSSLIASRLTTGAAED 441

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +E        + +    GDVV+   +   
Sbjct: 442 RVVAEDRAEAVRSVAAGAETGDVVLTMGAGDV 473


>gi|28493193|ref|NP_787354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Tropheryma
           whipplei str. Twist]
 gi|28476234|gb|AAO44323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei str. Twist]
          Length = 528

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 143/417 (34%), Gaps = 59/417 (14%)

Query: 64  GAGLVVVNTDMVASIGSLSI----------PVFGV--DDVLGALNKLAVAARLRSKATI- 110
           GA  V    D +  +    I          PV     D  +  L+++ +A R+R K    
Sbjct: 109 GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRDKVNTC 168

Query: 111 --IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             I ITG+ GKTTT  +    L+      A  G+    +   +   R P   D+ + EL 
Sbjct: 169 PWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGTPVLDAV---RNPKGFDYLVVELS 225

Query: 169 MSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L  +       V+   +    +   HL      E    AK+ ++ G   TG    N 
Sbjct: 226 SFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYCAKSRVYHG--TTGFCVYNL 283

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQG 278
           DD   + +  ++          FG            +     R +    + S +E+    
Sbjct: 284 DDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGILCDRAFLSARKDSALEITSVE 343

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K  +        H+  ++L  + +   +  +  +  +AL  F        R      +  
Sbjct: 344 KLEKNKLSM--RHIISDVLCAVALARSVETNPLSISRALDEFCLSP---HRTEVVAKEMG 398

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEV 395
              +++S   NP ++ A++S  S        R I + G + +  ++S     F+      
Sbjct: 399 VMWVNDSKATNPHAVIASLSNFS--------RVILIFGGLMKGVDVSGIFDRFYE----- 445

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS---SLVDGDVVVV 449
                I  V + G +   + +   + I V   ++ D +   + +       GD V++
Sbjct: 446 ----TIKAVVVIGKNQSFVGNIKCKKI-VCIPDSNDPMSEAVAAADLLATPGDTVLL 497


>gi|163781898|ref|ZP_02176898.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883118|gb|EDP76622.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 415

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 113/357 (31%), Gaps = 45/357 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +L +A R   +  ++AITG+ GK+TT  + ++ LS   K     G+    IG PL+  
Sbjct: 72  IGELELAYRF-FEGDVVAITGTDGKSTTTRLTSLMLSKKIKDVHEAGN----IGTPLSEV 126

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            M       + E+            +  RP +         HL     + +   +K  IF
Sbjct: 127 VMSDPKSTAVVEVSSFQG----RTLNTFRPSVGAFLNFHEDHLDWHPDLGDYLRSKHNIF 182

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              E   T          E+L   + A  +        ++                   V
Sbjct: 183 SRQEPRDTFI--AGSLQDEVLSTPTQADRVVVDREVVVAEG-----------------RV 223

Query: 275 QLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +G+ +  +      G H  +N ++   I  +     +       V     G   R   
Sbjct: 224 LFRGELLFELGDLRLKGAHNLKNAVVASIIARLKGVSTEDI---REVLREFRGLPFRMEL 280

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   + ++S +  P ++KAA+          +G  I + G   +  +         
Sbjct: 281 VKVWRGVEIYNDSKSTTPNALKAALESF------PDGSVILIAGGKDKGADFKP------ 328

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +   +   +L G    ++K A     ++    +++            GD V+ 
Sbjct: 329 LRETAERKLKLAFLIGETRESMKTAFGGGSNIKTMSSLEEAVDSALRVAEPGDFVLF 385


>gi|149371578|ref|ZP_01890994.1| UDP-N-acetylmuramate--L-alanine ligase [unidentified eubacterium
           SCB49]
 gi|149355205|gb|EDM43765.1| UDP-N-acetylmuramate--L-alanine ligase [unidentified eubacterium
           SCB49]
          Length = 457

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 132/395 (33%), Gaps = 60/395 (15%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153
           L +      +      +A+ G+ GKTTT  +L   + +      A +G    +       
Sbjct: 100 LKRSQFLGEITKDTKCLAVAGTHGKTTTSAILGHLMIACDMPVTAFLGGIAENYNSNF-- 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +    +  + E       E       + P IA IT++   HL  +    EI  +    
Sbjct: 158 --ISKGTEITVVEA-----DEFDRSFLTLSPDIACITSMDADHLDIYGNAAEIEKSF-ND 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L +     L     +   L  +          +    + A F+ +  +  +     +
Sbjct: 210 FANLVEDKNNLL-----YRSGLPLEGQ--------TVAIEEKAAFEAQNVRVENGGYVFD 256

Query: 274 VQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +Q    ++ ++  +  G+H   N +  +G+  +  A  D   +AL+ F   E   +R+  
Sbjct: 257 LQTPSVTLKDLRFYVPGHHNLHNAITAVGMAILAGASTDVLPEALASFKGVE---RRFSY 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +      LID+ Y  +P  + A    +S++ P    +++ V      +   ++ F  D 
Sbjct: 314 KIRTKDIVLIDD-YAHHPTELNALHQAVSEMYPED--KKVIVF--QPHLFSRTKDFVTDF 368

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALPRSI-----------HVHYSETMDG 432
           A+         +L +Y      + G +   L   +                 H SE +  
Sbjct: 369 AQSLMQFDQVYLLDIYPARETPIEGVNSNWLLRLINAERSSELPPAKLVSKAHISEVLKT 428

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               I+  +  GD+            ++   L  E
Sbjct: 429 SACRIKLLVGAGDI-------GAEVEQVAKNLKNE 456


>gi|313123440|ref|YP_004033699.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280003|gb|ADQ60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 460

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 112/350 (32%), Gaps = 42/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             + +TGS GKTTT  +        L         +G+      +   +       D  +
Sbjct: 114 PYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLLV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I  I    HL      +    AK  +    + +   
Sbjct: 172 VEMSSFQLMG----VTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVCRFQKASDYF 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQL-RKWKQCSEQSWMEVQLQGKSM 281
             N+D    + +  +        I +F +    ADF + + +    E+  M++       
Sbjct: 228 LANFDQ---KDILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKI------- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN L+ +GI S++ A  D     LS F    G   R +         +
Sbjct: 278 -ADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFT---GAEHRLQYVTTLDGVKV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +   AI    Q              ++   G L + F  D    L   ++
Sbjct: 334 YNDSKSTNIEAATVAIQSFKQ-------------PEVLLAGGLDRGFVFDSLVDLFKKHV 380

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L DA  ++    +   + +             GDV++ 
Sbjct: 381 KAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASKLAEAGDVLLF 430


>gi|304404008|ref|ZP_07385670.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346986|gb|EFM12818.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
          Length = 489

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 113/384 (29%), Gaps = 63/384 (16%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
           A L S A II ITGS GKTTT   +   L +        G+    IG PL  A    D  
Sbjct: 106 AYLLSPAPIIGITGSNGKTTTTTWIGELLQAAGLRPIVAGN----IGTPLCEAAQEADAS 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L      T   RPH+A++  +   HL    G+E+  ++KA++F      
Sbjct: 162 HTLVAELSSFQLKG----TTSFRPHVALLLNVVETHLDYHGGMEDYVASKAKLFANQTAD 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQG 278
               LN+DD+    +  +  +  +    +    K    +          E S        
Sbjct: 218 DIAVLNWDDAICRTIAEQLESQLLPFSLTQRLDKGLYIEPPYEVEPDQPEHSAAGASAGD 277

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA------------------LSVF 320
            ++      + Y  AQ     +  V  L                             +  
Sbjct: 278 GALAAPMRNVVYRDAQGAETVVIPVDELGIPGKHNAANAMAAIAAAIASGASIESLQAPL 337

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG---- 376
               G   R      +   T  + S   NPA+    +            R + + G    
Sbjct: 338 REFRGVEHRLEYVCERNGVTYYNNSKATNPAATIVGLKSF------PLDRIVLIAGGLDR 391

Query: 377 --DMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             D  E+    +              LA V  L  ++ V        A            
Sbjct: 392 GSDYMELLPWFEQLKAVVSLGETRGKLAHVAKLAGLTAVETVEPEGDAEA---------- 441

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
              T+        +    GDVV++
Sbjct: 442 ---TLQEAVRRASALAESGDVVLL 462


>gi|297623835|ref|YP_003705269.1| UDP-N-acetylmuramate/alanine ligase [Truepera radiovictrix DSM
           17093]
 gi|297165015|gb|ADI14726.1| UDP-N-acetylmuramate/alanine ligase [Truepera radiovictrix DSM
           17093]
          Length = 459

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 148/433 (34%), Gaps = 62/433 (14%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A    A L+V +T +  +   +             L ++ + A L ++   +A
Sbjct: 53  GHD---PAHVAHADLLVTSTAIPEAHPEV---QAARAQGKRTLRRIELLAELLNRRRSVA 106

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-----IFEL 167
           +TG+ GK+TT  M+                 +  + V   LA +  +V +G     I E+
Sbjct: 107 VTGTHGKSTTTGMIATLFLKAG--------CDPSVLVGGHLAALGSNVRYGHGAWIIAEV 158

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--------NFSGIEEIASAKAEIFEGLEK 219
             S  G     + L     AV+T +   H++          + +E + +A A      E+
Sbjct: 159 DESDPGFAALPSEL-----AVVTNLEDDHIAGDFSERRNYHASLEALEAATASFAARSER 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-G 278
              +    D      L       G+    ++G S+ A ++       +  S         
Sbjct: 214 ---VLFCADWPSLGPLLG-----GLPNAVTYGLSEGASYRASVCALSAAGSHFTFHAPHT 265

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +EV     G H  QN    L    +   D+  A + LS F    G G+R++   +   
Sbjct: 266 PPVEVRLLVPGRHNVQNAAAALAAAHLAGLDLKAAAEHLSTFG---GVGRRWQRRGSVRG 322

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---------H 389
             +ID+ Y  +P  ++  +        H   R  AVL         ++ +          
Sbjct: 323 ALVIDD-YAHHPTEVRVTLEAAR----HTGRRVRAVL-QPHRWVRTARHWPALADAAALA 376

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  VL +Y      + G     + + L  +       +      ++  SL   D+V+ 
Sbjct: 377 DEVL-VLEVYGAGEAAIPGVSARRIVERLQAAGTPASFHSAASAQSYLAESLEQNDLVIT 435

Query: 450 KSSNSCGFYRLIN 462
             +     + +  
Sbjct: 436 LGAGDV--WEVAE 446


>gi|241888445|ref|ZP_04775756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemella
           haemolysans ATCC 10379]
 gi|241864887|gb|EER69258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemella
           haemolysans ATCC 10379]
          Length = 446

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 116/354 (32%), Gaps = 54/354 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITG+ GKTTT +M    L +  K     G+    IG P             I 
Sbjct: 106 FNIDMVAITGTNGKTTTTQMTFDILKAANKDVFLAGN----IGYPSIEVAYNHPNSLIIT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T   +P +A IT +   HL     +E   +AK  I++   +   + L
Sbjct: 162 EVSSFQLQG----TKYFKPSVAAITNLGVGHLDYHGSVENYRNAKRNIYKNQTQDDILVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLR-KWKQCSEQSWMEVQLQGKSME 282
           N      + L+    +     +  +   +N  AD  +R       +    +V        
Sbjct: 218 NI-----KELEKYELSKINSQVILYDTKENSEADVFVRNNIVVYKDVELFDVT------- 265

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +    I  I  A ++T  + L  F   +    R +           
Sbjct: 266 -KMSLPGLHNVENAINAALISYIKGASIETIREVLYSFSGVK---HRLQYVGEHNGVKFY 321

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVL 396
           ++S   NP +   A+S   +         I V G      D  E+               
Sbjct: 322 NDSKATNPVATTTALSGFEK-------NIILVCGGKDRGIDFKELVPFFPR--------- 365

Query: 397 SLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               I  + + G     L D A    +  H +  +D   +      V+ D+V++
Sbjct: 366 ----IKAMVVVGESKEILYDLATTNGLDCHKATKVDDATILANKLAVEDDIVLL 415


>gi|238060043|ref|ZP_04604752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp.
           ATCC 39149]
 gi|237881854|gb|EEP70682.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp.
           ATCC 39149]
          Length = 452

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 135/387 (34%), Gaps = 40/387 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VVV +  V +     + + G    +   + L +A   R     + +TGS GK+TT  
Sbjct: 71  AAEVVVRSPGVPNTHPWLVELRGRGVTVTQGSALWMADHAR---RTVGVTGSKGKSTTSS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  L+++ +     G+    +           D D  + EL      ++        P
Sbjct: 128 LISHLLTAVDRPNVFGGNIGVPLLD-------LPDADLYVLELSSYQCADL-----TDSP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T + P HL    G  E    K  +     +  TI +N  D         +  LG 
Sbjct: 176 RVAVVTALFPEHLDAHGGEREYYRDKLNLLAHGPQ--TIVVNGADPRL------AAELGD 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +     G                + + W  +  +      V   +G H   N+ + L ++
Sbjct: 228 RPAVRAGSPDT-----THVAPGPDGTPWFHLGDRPLFPRAVLPLVGRHNEGNLCVALAVL 282

Query: 304 SILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + L  DV     AL+V     +G   R     +    T +D++   +P +   AI     
Sbjct: 283 AALGVDVVARADALAVAVAGFQGLAHRLTEIADPSGLTFVDDTLATSPYAAMHAIDA--- 339

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                EGR + V+    + G         LAE      +  +  SG  ++A    LPR +
Sbjct: 340 ----YEGRPVTVIVGGADRGLDYAPLREHLAE--REITVLGIPDSGQRIVATLAGLPR-V 392

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + +       +       VV++
Sbjct: 393 RAEVVDDLVAAVRRARELTPADGVVLL 419


>gi|319764374|ref|YP_004128311.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|330826593|ref|YP_004389896.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
 gi|317118935|gb|ADV01424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|329311965|gb|AEB86380.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
          Length = 593

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 117/372 (31%), Gaps = 48/372 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-- 160
           R      ++AITG+ GKTT   +  + +    K+ A  G+    +   L   R+      
Sbjct: 203 RHGYAPAVLAITGTNGKTTVTSLTGLLVDCAGKSVAVAGNIGPTLLDTLGE-RLDAGQLP 261

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L           P  A +  +   HL     ++  A AKA IF      
Sbjct: 262 EVWVLELSSFQLDG----AQGFEPTAATVLNVTQDHLDWHGSMQAYAQAKARIF---GAA 314

Query: 221 GTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADF------------QL 260
           G + LN DD     +     + K     ++   +FG     +  DF            + 
Sbjct: 315 GLMILNRDDPLVMDMLPPPVRVKLQKPQLRAHVTFGGDMPQRPGDFGIEVVSGMAWLVRA 374

Query: 261 RKWKQCSEQSWM---EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
               + + +  +   E+ +Q           G H   N L  L  +++  A        L
Sbjct: 375 HDADETARRGKVQEAELHVQRLMPADALRIRGRH---NALNALAALALAQAAGCALAPML 431

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                  G   R             D+S   N  +  AA++ L       + R + +LG 
Sbjct: 432 YGLREYRGEPHRVEPVGMVREVEYFDDSKGTNVGATVAALTGLGA-----DRRLVLILGG 486

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLF 436
             +  + S      +A            L G     ++ AL    + +  + T+      
Sbjct: 487 DGKGQDFSP-LAAPVARYARAA-----VLIGRDAPQIRAALEGCGVPLLDAATLPEAVQL 540

Query: 437 IQSSLVDGDVVV 448
                  GD V+
Sbjct: 541 ASQRAHAGDAVL 552


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A     +  ++A+TG+ GKTTT  ++   L+S         +   ++    T
Sbjct: 454 EAVMDTLFAHGDDGRIPVVAVTGTNGKTTTARLINHLLASSGLRTGMTNTDGVYVDGRQT 513

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
            +             M  DVD  +FE+     G +R      R  +AV+T I    HL  
Sbjct: 514 DSGDCSGPKSARNVLMHPDVDAAVFEVA--RGGVLREGLGFDRCQVAVVTNIGSGDHLGL 571

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              + +E++A  K  I   +   G   LN  D     + A         +  F   +   
Sbjct: 572 NYITTVEDLAVLKRVIVRNVAPDGYAVLNAADVNVAAMAAGCPG----HVIFFTADRQHP 627

Query: 258 FQLRKWKQCSEQSWME----VQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  Q     +++    V  +G        + + +   G       N++  +     
Sbjct: 628 VMATHRAQGKRTVYVDQDTLVAAEGSWRERIALRDVPITRGGTIGFQVDNVMAAVAAAWA 687

Query: 306 LTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  D DT    L+ F +   G   R+     +G   + D  Y  N  +M+A +S +  + 
Sbjct: 688 VGLDWDTIRSGLASFLNDAAGVPGRFNVMDYRGATVIAD--YGHNTDAMRALVSAVDTMP 745

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
            +   R + + G     G+   S   D   +L       V L           G  +  L
Sbjct: 746 ANK--RSVVISG----AGDRRDSDIRDQTAILGQA-FDDVILYQDAAQRGRADGEVMALL 798

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGD--VVVV 449
           +  L  +    Y + + G         + L  GD  +++V
Sbjct: 799 RQGLQGAARTRYIDEIRGEFVAIDTALARLQPGDLSLILV 838


>gi|251779235|ref|ZP_04822155.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083550|gb|EES49440.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 458

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 132/391 (33%), Gaps = 81/391 (20%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA I  ITGS GKTTT  +++  L          G+    +   +   +     D  + E
Sbjct: 116 KAKIYGITGSDGKTTTTTIISKMLQEEGYKTWVGGNIGTPLFAQIEEIKAE---DRVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +T  +   IAV T +AP HL     ++E   AK  IF   + T T+ +N
Sbjct: 173 LSSFQL-----MTMNLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIFLYQDTTNTLVVN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW---KQCSEQSWME---VQLQGKS 280
            ++                   ++G    A   +R++   ++  E ++ +   + L GK 
Sbjct: 228 RENE-----------------ITYGFEAEAKGVVREFSSKREVKEGAYYKDGILYLSGKE 270

Query: 281 MEVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +    + +  G H  +N L    I +     ++   K    F+  E    R         
Sbjct: 271 VCKKDNIVIKGMHNVENYLAAF-IATKDDVSIENMKKVAESFNGVE---HRCELVREING 326

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S  ++P    A +    +       + I + G            H+ L E L+ 
Sbjct: 327 VKYYNDSIASSPTRTLAGLKAFDK-------KVILIAGGY--------DKHL-LFEPLAN 370

Query: 399 YN---ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV- 447
                I  + L G     +KD            I++    T++      Q     GD++ 
Sbjct: 371 QGYPYIKELILLGQTKEKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQYLAKQGDIIT 430

Query: 448 --------------VVKSSNSCGFYRLINLL 464
                         ++       F  ++N L
Sbjct: 431 LSPACASFDMFPNFMI---RGNKFKEIVNEL 458


>gi|33865066|ref|NP_896625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 8102]
 gi|60390530|sp|Q7U8T1|MURD_SYNPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33638750|emb|CAE07045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8102]
          Length = 462

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 108/352 (30%), Gaps = 34/352 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA         + ITG+ GKTT   +L+  L       A     N  +        
Sbjct: 98  GEMAVAWDALKHIPWVGITGTNGKTTVTHLLSHVLCQAG--LAAPMGGNMGVSAAEMALN 155

Query: 156 MPVDV----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +  +     D+ + EL    +         +RP I + TT+ P HL     +E   + K 
Sbjct: 156 LQQEHTTAPDWLVMELSSYQI----EAAKRIRPRIGIWTTLTPDHLERHGTVEAYRAIKR 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   LE++     N DD     L+ +  +    T  S  +S   D          +   
Sbjct: 212 GL---LERSDHAIFNADDP---DLRQQRQSWTGGTWVS-AESAQPDGHPADLWINGKGWV 264

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +        E      G H  QN+L+       +     + +  L  F        R  
Sbjct: 265 CDRSQPLFPAE-ALAMPGAHNRQNLLLVTAAARQIGLSPASIVAGLRSFPGVP---HRLE 320

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G   + ++S   N  +    +  +        G  + + G   + G+ +      
Sbjct: 321 PVGRIGNAQVFNDSKATNYDAAAVGLKAMQ-------GPVVVLAGGSTKQGDATGWL--- 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             E L+      V L G     L   +  +           L   ++ ++  
Sbjct: 371 --EELNRKAC-AVVLFGAGTEELHGLITGANFTGELTRRTDLTSAVEEAVRS 419


>gi|257092210|ref|YP_003165851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044734|gb|ACV33922.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 455

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 139/401 (34%), Gaps = 44/401 (10%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAIT 114
           F   A   G  L+ ++  +      +   V  GV  V            L  +A +IAIT
Sbjct: 60  FTAEAFA-GVDLIAISPGVPVQEALVQAAVARGVPLVSEIELFAWGIGGLTPRARVIAIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLG 173
           GS GKTTT  ++     +  +  A  G+        L  A     + +  + EL    L 
Sbjct: 119 GSNGKTTTTALVGALCRAAGRRTAVAGNIGPAALDALMSAIDGRSLPELWVLELSSFQL- 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                TH +    A +  +   HL  +  +++  ++KA IF+G    G + LN DD+   
Sbjct: 178 ---ETTHSLAADAAALLNLCEDHLDRYLDMDDYTASKARIFQG---NGVMVLNRDDA--- 228

Query: 234 LLKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             ++ +     + + +FG +      D+ +           +    +          +G 
Sbjct: 229 --RSLAAGRPGRRMVTFGLNPPPRPCDYGVVDGWIVRGDDRLVACSE-------LQLVGS 279

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N +  L +      D+ + + AL  F   +G   R             D+S   N 
Sbjct: 280 HNAANAMAALALCEAAGIDLASVLPALVAF---KGLAHRVEWVAEIDGVAYFDDSKGTNV 336

Query: 351 ASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            +  AA+  L        GR +A +LG   +  + +              +     L G 
Sbjct: 337 GATLAALQGL--------GRPVAIILGGDGKGQDFAP------LRPALDAHARAAALIGR 382

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             LA+   L    + + +   M     +  +    GD V++
Sbjct: 383 DALAMAAILEGCQVPLQHCVDMAEAVRWCAAQARAGDAVLL 423


>gi|154252861|ref|YP_001413685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156811|gb|ABS64028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parvibaculum
           lavamentivorans DS-1]
          Length = 467

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 95/332 (28%), Gaps = 30/332 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A ++AITG+ GK+TT  ++   +          G+    +        + ++      
Sbjct: 110 TGAKVVAITGTNGKSTTTALIGHMVRRCGGDAQVGGNIGKAV--------LELEAPSASS 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +        L   + PHIAV+  I P H+     +E  A  KA IF       T  +
Sbjct: 162 VYVVEVSSYQIDLAPSLAPHIAVLLNITPDHIDRHGTVEHYADVKARIFARQTAADTAVI 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+     +  +  A  ++ +      K     +         S      +   +  + 
Sbjct: 222 GIDERRSSDICTRESARRVEKVVPVSVGKALSRGVYALDGVLYDSTGTQTAKAGDLRTIK 281

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN          L    +      + F    G   R            +++S
Sbjct: 282 TLAGAHNWQNAAAAYAAGRALGYQRERI---FAAFESFPGLAHRMEIVAEAEGVRFVNDS 338

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG--ELSQSFHIDLAEVLSLYNISH 403
              N  +   A+     I     G+         E G   L   F            I  
Sbjct: 339 KATNADAASKALGTYDNIYWIAGGK-------AKEGGIESLEPWFPR----------IRR 381

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            +L G    +  + L   +      T+D    
Sbjct: 382 AYLIGDAAKSFGETLKGKVEAVQCGTLDRAVE 413


>gi|257877577|ref|ZP_05657230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
 gi|257811743|gb|EEV40563.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
          Length = 455

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 122/352 (34%), Gaps = 37/352 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A II ITG+ GKTTT  M+   L++  +    + S N       ++A+     D
Sbjct: 109 AYQISEAPIIGITGTNGKTTTTTMIANVLNAGMQKGQALLSGNIGFPAS-SVAQTAKAED 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I  L    RP IAVIT I  AH+       E   AK  + + +    
Sbjct: 168 RLVMELSSFQLMGIDTL----RPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTADD 223

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGK 279
            + +N++    E L AKS+A     I  F   +     + L       E+  M       
Sbjct: 224 YLVINWNQPELEALSAKSNA----QIIPFSTKEKVAGAYMLDGILYYKEEVIMAAD---- 275

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +     +   +AL  F        R +        
Sbjct: 276 ----ELGVPGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVP---HRTQYVTTINQV 328

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+             ++ +L    + G            V +L 
Sbjct: 329 KFFNDSKATNILATEMALGGFDN-------EKLILLAGGLDRGNSFDDL------VPALK 375

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + L G     L  A   +    +  ++ ++       S    GD +++
Sbjct: 376 GLKAIVLFGETKEKLAAAAQAAGIKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
 gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
          Length = 458

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 126/379 (33%), Gaps = 57/379 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +  ITGS GKTTT  ++   L S        G+  N +     + RM  + D  + E
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYNMLKSQGYKTWVGGNIGNPLF--ANIERMTKE-DKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I         + A++T ++P HL     +EE  +AK  IF+   +   + LN
Sbjct: 173 LSSFQLMTINE-----DINCALVTNLSPNHLDVHKDMEEYVNAKKNIFKYQNENDLLVLN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+     L  ++       +  F   +     +             +  +  ++E V  
Sbjct: 228 RDNKITNDLVNEAKG----RVKQFSIKEE----INNGAYFKNNKLFILDKEVCALEEV-K 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L    +V     +VD   K  + F   E R +  R           ++S 
Sbjct: 279 LKGMHNVENLLAAFCLVHE-DVNVDIMRKVATTFTGVEHRCEFVR---ELDGVKYYNDSI 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHV 404
            ++P    A +    +         I + G            HI    +       I  +
Sbjct: 335 ASSPTRTIAGLRAFEK-------PVILIAGGY--------DKHIPFEPLAEEGYDKIKAL 379

Query: 405 WLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            L+G     +K A           I ++  E  +      +     GD+V +    +S  
Sbjct: 380 ILTGVTKEKIKKAFDDVIKNKQYKIPIYMLEGFEEAIYKAKEISKMGDIVTLSPACASFD 439

Query: 453 -------NSCGFYRLINLL 464
                      F  ++N L
Sbjct: 440 MFANFEIRGNKFKEIVNNL 458


>gi|326800443|ref|YP_004318262.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326551207|gb|ADZ79592.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 453

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 142/382 (37%), Gaps = 43/382 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  T + + GS GKTT   M+   L  + +++  +      +    T+ ++  D  
Sbjct: 97  YEQAKDKTRVVVGGSHGKTTITSMIMHVLKELGRSFDYV--VGAKLEGFETMVKITKDAP 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPH--IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             I E        I      +  H  IA+I+ IA  H++ F   +E         E +E+
Sbjct: 155 LIIIEGDEYLASAIDRRPKFLLYHANIALISGIAWDHINVFPTYQEYVEQFKLFIESIEE 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            GT+  N DD   + L + +++   K            ++L ++      S+    L+  
Sbjct: 215 KGTLVYNKDDKEVQNLVSNNNSNINKH----------GYKLPEFTINKGVSY----LKTS 260

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E+     G H   N+     +   L    +   +A+  F   +G  +R     +    
Sbjct: 261 KGEIALQIFGKHNLSNLAGAFTVCEWLGISREDFYQAIGSF---KGAARRLEYVADYAGS 317

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEVL 396
            +  + +  +P+ ++A+I  + +  P+   + +A++    E+   S   + F  +  + +
Sbjct: 318 VVYKD-FAHSPSKVRASIDAVKEQYPN--SKLVAII----ELHTFSSLNEEFLQEYFDTM 370

Query: 397 SLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              + + V++               L +K A  R   + Y      L  +I      G  
Sbjct: 371 KQADEAVVFIDQNSFRQKNIKPIEALTIKKAFNRD-DIIYFNDAQSLEAYISQLDPQGKN 429

Query: 447 VVVKSSNSCGFYRLINLLLEEF 468
           V+  SS + G   L+N L ++F
Sbjct: 430 VLFMSSGNFGGINLVN-LSDKF 450


>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 450

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 115/357 (32%), Gaps = 37/357 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                +   A  IAITGS GKTTT  +    L+ +  +    G+    +   +    +  
Sbjct: 96  FAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVGLGGNIGTSLARQI----IHE 151

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
             D  + EL    L ++    +  +  +AV+  I P HL  +    E   ++K  IF+ L
Sbjct: 152 KKDVYVLELSSFQLDDM----YTFKADVAVLLNITPDHLDRYEYKFENYTASKFRIFQNL 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWME 273
                     +DS  E  K            S    +     +D +  +     +     
Sbjct: 208 TPADYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYSAGAYSDEKTIQIHALDD---TV 264

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V    +         G H   N++  L     + AD+  +I ++  F        R    
Sbjct: 265 VTCNTEEF----PLQGKHNYINIMAALNAAVSIGADIHKSIASIKSFRNAP---HRLEFV 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      +++S   N  S+  A+  +           + ++G + +  + SQ       
Sbjct: 318 GSIYGVKFVNDSKATNVDSVWYALDSMKT-------PVVLIVGGVDKGNDYSQ------I 364

Query: 394 EVLSLYNISHVWLSGFH-VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           E L    +  V   G      L         +  + +M         S   GD V++
Sbjct: 365 EALVKEKVHTVVALGKDNSKVLSGFASMVSEIKEAHSMVEAIRIAHDSAKKGDTVLL 421


>gi|319649665|ref|ZP_08003821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
 gi|317398827|gb|EFV79509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
          Length = 450

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 122/350 (34%), Gaps = 35/350 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   S+A  IAITG+ GKTTT  ++   L +  K     G+      V   +A+   + +
Sbjct: 106 AFQVSEAPFIAITGTNGKTTTTTLVFEMLQAGSKMPLIAGNIGT---VASEVAQNAAEEN 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+      RP IA++T +  AHL      EE  +AKA I     +  
Sbjct: 163 NIVIELSSFQLMGIQDF----RPRIAILTNLYDAHLDYHGTREEYHAAKANITMNQTEKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N D        A+S A     I  F  S     ++       +  W+    +    
Sbjct: 219 YFIVNADQDKVMEAAARSEA----KIIPFSTS-----RVLSEGAYVKDGWIYFNDEQVMK 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L ++    +     +   + LS F   +    R +          
Sbjct: 270 RKDVSLPGEHNLENILSSVAAAKLTGVGNEAISQVLSSFTGVK---HRLQYVGEYQSRKF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + K A+S   Q         + +L    + G            + SL  +
Sbjct: 327 YNDSKATNILATKNAVSAFDQ--------PVILLAGGLDRGNGFDEL------IPSLKKV 372

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     +++A   +    +   + ++            GDV+++
Sbjct: 373 KALVTFGQTAEKIENAAMEAGIKTIERVDNVEKAVPAAFKLSEPGDVILL 422


>gi|317495036|ref|ZP_07953408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
 gi|316914808|gb|EFV36282.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
          Length = 446

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 115/349 (32%), Gaps = 44/349 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITG+ GKTTT +M    L    K     G+    IG P             + 
Sbjct: 106 FSIDMVAITGTNGKTTTTQMTYDILKKANKDVFLAGN----IGYPSIEVAYNHPKSLIVT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T   +P IAVIT +   HL     +E   +AK +I+    K   + +
Sbjct: 162 EVSSFQLEG----TKYFKPSIAVITNLGEGHLDYHGNLENYQNAKKKIYVNQTKDDFLII 217

Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKN--ADFQLR-KWKQCSEQSWMEVQLQGKSM 281
           N         K K +   IK TI  +   +N   D  ++       E    +        
Sbjct: 218 NI------KEKEKYNFDKIKSTIIFYDTKENISTDVYIKENIVMFRETELFD-------- 263

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N +    I  +  A  D   + L  F   +    R +          
Sbjct: 264 STKLKLPGMHNVENAINAAIISYLKGASTDAIQQVLYNFSGVK---HRLQYVGEYKGVKY 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   NP +   A+S   +         I + G     G+       +L   LS   I
Sbjct: 321 YNDSKATNPVATTTALSGFDK-------NIILICG-----GKDRGIDFKELIPYLSK--I 366

Query: 402 SHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     L   A+  ++    +  +        S   +GD V++
Sbjct: 367 KVMVVVGESKELLYSLAIQHNVKCIKAIKVADATKLASSLAKNGDTVLL 415


>gi|123965256|ref|YP_001010337.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199622|gb|ABM71230.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 469

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 130/371 (35%), Gaps = 41/371 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            ++I GS GKT+T   L+  L       + I      I           +  + + E+  
Sbjct: 118 TLSIAGSHGKTSTSTFLSTLLELCTHDSSSITGGIIPIYKS---NAHIENTKYLVTEIDE 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G I   T     +I +I  I   H  ++S I+EI S+  +     +K   + +NYD 
Sbjct: 175 SD-GTINNYTS----NIGIINNIDFDHCDHYSNIDEILSSFKQFASNSKK---LLINYDC 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGI 288
                             +S  +  N  + +       + +  +    G  ++ +     
Sbjct: 227 KITR------ENFTSHNQWSIKEKNNITYSIIPNTINKDITIGKYYEHGDFVDSINIPIP 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+   +    ++        K +      + R + +R  LNQ    +  + Y  
Sbjct: 281 GLHNLSNITAAIAACRMIGVSFKEIKKNIKSLELPKKRFE-FRGELNQ---RVFYDDYAH 336

Query: 349 NPASMKAAISVLS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
           +P  +KA I +         I+ + +GR IA+           + F  +  + LS  ++ 
Sbjct: 337 HPNEIKATIDLARLFIIDNNINKNQKGRLIAIF--QPHRFTRVKQFIHEFVQELSKADVI 394

Query: 402 --SHVWLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             ++++ +G           + + +  ++ +V   +    +         + D ++   +
Sbjct: 395 YLTNIFGAGEENIDNINSQVIANLIYKKNKNVTCLKNNYEIKDKFFKLTKENDFILNMGA 454

Query: 453 NSC-GFYRLIN 462
             C   + ++N
Sbjct: 455 GDCHKLWSILN 465


>gi|323527382|ref|YP_004229535.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1001]
 gi|323384384|gb|ADX56475.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1001]
          Length = 464

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 129/372 (34%), Gaps = 28/372 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   + + G +  N
Sbjct: 162 EYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRIGRVVTN 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +   E +  +        +  FG     + Q  +     ++ +       +   V   
Sbjct: 222 GREDALERVLTRG---CWSEVERFGVQGGWETQPAEDGVPVDERFAVYHNAERVGVVEWQ 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+ +
Sbjct: 279 VQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVK---RRMEVRGSVDGVTVYDD-F 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVW 405
             +P ++   ++ L         R +AVL    E    +    +  A++  SL +   V+
Sbjct: 335 AHHPTAIDTTVAGLRARVGRDNTRILAVL----EPRSNTMKLGVMKAQLPGSLADADLVF 390

Query: 406 LSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P        + +D L   +  +   GD ++V  SN  GF 
Sbjct: 391 GYGAPSGRDALGWNLGEALAPLGAKAQAFDNLDALVKAVVHAARPGDQILVM-SNG-GFG 448

Query: 459 RLINLLLEEFPA 470
            +   LL+   A
Sbjct: 449 GVHQKLLDALSA 460


>gi|329115575|ref|ZP_08244297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
 gi|326695003|gb|EGE46722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
          Length = 499

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 130/385 (33%), Gaps = 48/385 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIA 129
              +        IP+    ++L        A R   SKA  + ITG+ GK+TT  +L   
Sbjct: 120 PHPIALMAKEAGIPILSDAELL------YRAVRKSGSKARFVGITGTNGKSTTTTLLAHI 173

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+  K   A  G+             +  D    + E+    L  +  L    R   A +
Sbjct: 174 LAEAKLPVAAGGNLGPAALALP----LLPDNGVYVLEMSSYMLERLDTL----RFDAACL 225

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             + P HL   +G++  A AK  +F G        +  DD++   + A+      K    
Sbjct: 226 LNLTPDHLDRHAGMDGYAQAKKRVFTGQTGKDMAVVGMDDTWCRTIAAELEHEPAKCETI 285

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G +    +  +        + +         +      G H A+N    + I   L   
Sbjct: 286 SGTNPTCSYYGKDGAIWHHSTCI--------AQTGLSLPGAHNAENAAAAIAIARFLDVP 337

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  +A++ F    G   R +   +      +D+S   N  +   A+    ++      
Sbjct: 338 DATIAQAVASF---PGLPHRQKLVASCNGVDFVDDSKATNADAASRALGCYEKL------ 388

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLALKDALPR-SIHVHY 426
                 G   E G  S          L+ Y  +I+H +L G     L   L   ++    
Sbjct: 389 -VWIAGGTAKEGGIAS----------LTPYFPHIAHTFLIGRDAPQLAQTLKEHNVPFTM 437

Query: 427 SETMDGLF--LFIQSSLVDGDVVVV 449
           +ET++      + ++ L    VV++
Sbjct: 438 AETLENAVPAAYTEAHLTHTPVVLL 462


>gi|227893335|ref|ZP_04011140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864750|gb|EEJ72171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
          Length = 459

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 126/389 (32%), Gaps = 49/389 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L+IP+    +   AL+              + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVKKAEELNIPIIT--EPEIALSCSEAPY--------VCVTGSNGKTTTVMLTQ 132

Query: 128 IAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             L             +G+    I   +  A      D  + E+    L  +  +   V 
Sbjct: 133 RILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---DILVVEISSFQLLGVTDIDPKVA 189

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + +   +   HL      E   +AK  +            NYD    + + AK   + 
Sbjct: 190 AIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQTSDDYFIANYDQ---KDILAKEKKVS 243

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I +F +   NAD+ +   +    Q+   +++            G H  QN ++ + I
Sbjct: 244 PAKIQTFSETDHNADYFIGD-EYLESQNEKIMKIAD------IKLPGIHNLQNSMVAIAI 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+ AD D     LS F    G   R +         + ++S + N  +   AI    +
Sbjct: 297 SKIMGADNDDIAAVLSTF---AGAKHRLQYVTTLDGRKVYNDSKSTNIEAATVAIPAFKE 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                    IA        G L + F  D    L   ++  + L G     L DA  ++ 
Sbjct: 354 PEV-----LIA--------GGLDRGFTFDDLVPLFKKHVKAIVLYGETKYLLADAARKAG 400

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    T+             GDV++ 
Sbjct: 401 IKEIVIVNTLQEAVPRAYELTQPGDVLLF 429


>gi|163786568|ref|ZP_02181016.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
 gi|159878428|gb|EDP72484.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
          Length = 880

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 127/382 (33%), Gaps = 46/382 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------- 156
              +  IIA +G+ GKTTT  ++               S   +I   L +          
Sbjct: 481 DTGRIPIIATSGTNGKTTTTRLIAHIAKMKGYRVGYTTSDGVYIQNRLLMTGDCTGPASA 540

Query: 157 -----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASA 209
                   V+F + E      G +R      +  +AV+T +A  HL       IE++A  
Sbjct: 541 EFVLKDPTVNFAVLECA--RGGLLRAGLGFKKCDVAVVTNVAADHLGLKGIHTIEQLAKV 598

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRK----WK 264
           KA + E +   G   LN DD     ++          +  F   +N    +  +      
Sbjct: 599 KAVVPETVLPDGYAILNADDDLVYDMRRNVDC----NVALFSMDENNPRVKALQRKGGIT 654

Query: 265 QCSEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              E  W+ +         ++  ++ + + G    M QN+L  +    +    ++    A
Sbjct: 655 AVYENGWVTICRGEWKMRIMEAVNIPLTYGGKAKFMIQNVLGAVLAAHVQGISIEDMKAA 714

Query: 317 LSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L  F P   +   R        F  L+D  Y  NPA M+A      ++    +   IA +
Sbjct: 715 LETFIPSASQTPGRLNLFEFNDFSILLD--YAHNPAGMRALQKFTDELDATVKVGIIAGI 772

Query: 376 GDMC-----EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYS 427
           GD       EMG ++     ++  ++              +  L D +     +      
Sbjct: 773 GDRRVEDNNEMGSIAAEMFDEI--IIRQDKRLRGKTEEELIKMLNDGIKMKDPNKKTTII 830

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            +          + V G ++++
Sbjct: 831 PSESEAIKHAVKNAVKGSLIIL 852


>gi|308173485|ref|YP_003920190.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606349|emb|CBI42720.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 115/346 (33%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +        G+      V   +A      ++ + 
Sbjct: 111 TNAKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGT---VASEVAYHADGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RP I +I  +  AHL      E    AK +++    ++ T  +
Sbjct: 168 ELSSFQLMG----THAFRPEIGLILNVFDAHLDYHHSRENYEKAKQKVYLHQLESDTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N +D     L     A  +    S   S  A F         +++ + V           
Sbjct: 224 NQNDETVVRLAKGGKAGTVPFSVSQELSSGA-FIKDGMLMFGDEAILPVD--------DI 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +       A      K L+ F   + R +      N+ F+   ++S
Sbjct: 275 VLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYVTAIQNRKFY---NDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S             + +L    + G         +       N+  V 
Sbjct: 332 KATNILATSKALSAFKA--------PVILLAGGLDRGNGFDELKPYM------DNVKAVL 377

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     ++         HV   + ++       +   +GDV+++
Sbjct: 378 TFGQTAPKIEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|325684350|gb|EGD26519.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 460

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 112/350 (32%), Gaps = 42/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             + +TGS GKTTT  +        L         +G+      +   +       D  +
Sbjct: 114 PYVCVTGSNGKTTTVMLTKQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLLV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I  I    HL      +    AK  +    + +   
Sbjct: 172 VEMSSFQLMG----VTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYF 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQL-RKWKQCSEQSWMEVQLQGKSM 281
             N+D    + +  +        I +F +    ADF + + +    E+  M++       
Sbjct: 228 LANFDQ---KDILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKI------- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN L+ +GI S++ A  D     LS F    G   R +         +
Sbjct: 278 -ADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFT---GAEHRLQYVTTLDGVKV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +   AI    Q              ++   G L + F  D    L   ++
Sbjct: 334 YNDSKSTNIEAATVAIQSFKQ-------------PEVLLAGGLDRGFVFDSLVDLFKKHV 380

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L DA  ++    +   + +             GDV++ 
Sbjct: 381 KAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASKLAEAGDVLLF 430


>gi|330859326|emb|CBX69673.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           W22703]
          Length = 278

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +  +   + +     IPV    ++L  L +             IA+ G+ GKTTT  M+
Sbjct: 87  AISADNPEIVAAREARIPVIRRAEMLAELMRFR---------HGIAVAGTHGKTTTTAMV 137

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +   +            N  +              + I E   S    +      ++P +
Sbjct: 138 SSIYAEAGLD---PTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMV 189

Query: 187 AVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A++T I   H+       E +          L   G   +  DD     L  +      +
Sbjct: 190 AIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----GR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            I ++G S +AD Q+  ++Q   Q   + +  G
Sbjct: 246 HITTYGFSDDADVQIASYRQEGPQGHFDTETTG 278


>gi|114319765|ref|YP_741448.1| UDP-N-acetylmuramate [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226159|gb|ABI55958.1| UDP-N-acetylmuramate [Alkalilimnicola ehrlichii MLHE-1]
          Length = 453

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 128/373 (34%), Gaps = 41/373 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++A++G+ GKTTT  +L   L          +G    + G    L     D  F +
Sbjct: 101 HDRWVLAVSGTHGKTTTASLLAWILEYAGLNPGFLVGGVPTNFGRSARLG----DGPFFV 156

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  +  RP   VI  I   H   F  +  I      +   +   G 
Sbjct: 157 IEADEYDSAFFDKRSKFIHFRPRTLVIHNIEYDHADIFPDLAAIQRQFHHLVRTVPGNGL 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
           I  N D +      A++   G  T     G   + D++   +    +    E+ L+G   
Sbjct: 217 IIANGDQANV----AETLGQGCWTPTLRLGTGPDCDWR---YDLNGQG---EMVLRGGDA 266

Query: 281 --MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +       G H A N    L     +   + T + AL+ F   +   +R       G 
Sbjct: 267 TPLTARPPLPGLHNAANCAAALLAARHVGVPLSTGLDALAGFRGVK---RRLELRGEAGG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVL 396
             + D+ +  +P +++A +  +      G GR +AVL    E    +     H +     
Sbjct: 324 VRVYDD-FAHHPTAIRATLEAMR----PGPGRLLAVL----EPRSNTMRMGIHRERLAAA 374

Query: 397 SLYNISHVWLSGFHVL-ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                +   L G  +  ++ DAL   +     ++ +  L   I+     GD VVV  SN 
Sbjct: 375 LAPADAVFALQGKGLEWSVADALAGLTPPAEVAQDVPALVQRIRQQARPGDRVVVM-SNG 433

Query: 455 C--GF-YRLINLL 464
              G   RL+  L
Sbjct: 434 AFDGLHGRLLAAL 446


>gi|206602134|gb|EDZ38616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 487

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 131/394 (33%), Gaps = 32/394 (8%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+V+  +     +       + +V+G +      A LR+   ++A+ G+ GK+TT  +L 
Sbjct: 79  VIVSPGVPTRKWAGQEAPLYIRNVMGEM----EWASLRTSVPLVAVGGTNGKSTTSALLA 134

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPH 185
             L +  +     G++   +   +   R          + EL             + RP 
Sbjct: 135 HFLEAAGERVFLGGNFGTPLSEMVLSEREGSSPLPTVAVVELSSFQ----AETMGVFRPV 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++  I P HL  +  ++    AK   F+ +EK     LN D +    +      +  +
Sbjct: 191 VNLLLNITPDHLDRYLSVDHYRRAKWNAFQTMEKDSFTVLNRDPACG--VYPPFSPISSR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQG-KSMEVVH---HGIGYHMAQNMLMTL 300
             + +G  +    +        +     +  ++G   +          G    QN+   L
Sbjct: 249 LAWFYGSKEPCPDRTGGLILEGDPLSATLDGIEGLPPISWNLKNFPLEGMGNRQNLAAAL 308

Query: 301 GIVS----ILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                         + A  A         G   R            I++S   N  + + 
Sbjct: 309 LGAVLYLQATGKHPEQATTALEKAAASFRGLPHRMEVVGEWKGIRFINDSKATNVDATRL 368

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+   +  SP        +LG     G    + +  L E +   ++  + + G     ++
Sbjct: 369 ALEGYAGHSPIVH----LILG-----GRDKGAPYAPLREGIRT-SVKSIAVLGEAREKIR 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L   + +   E+++           +GD V++
Sbjct: 419 EELGSLVPMTLCESLEEAVDVAAGQASEGDRVLL 452


>gi|239617752|ref|YP_002941074.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506583|gb|ACR80070.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 445

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 30/281 (10%)

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++T +   HL +++   +   A    F     TG    N DD   + L           
Sbjct: 171 AIVTNVRGDHLEHYNNSLKNLQAHFHYFAK-RITGIFIYNADDEASKRLFGGMG------ 223

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
             +FG++ + D++  K      +   EV     S+     +  G H   N    + + + 
Sbjct: 224 -ITFGEN-DGDYRFTKRTCDRTKQSFEVYHGKHSLGRFTLNLPGIHNVYNATAVIAMAAE 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D    +L+ F   + R   +R    +     ID+ Y   P  ++   + +     
Sbjct: 282 LGIPMDIVKNSLATFKSVDRRF-TFRGFSEEKNLYFIDD-YAHTPDEIR---NTIRGAKE 336

Query: 366 HGEGRRIAVLGDMC-------EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               R+I V+           E G  + S     A+ + +Y +   +  G + ++  + L
Sbjct: 337 SYPDRKIIVVFQPHRYSRLARENGRFAASL--KSADAVCVYKLYDAYEKGRYAVSEVEVL 394

Query: 419 PR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  +  ++++  + +  ++ S      VV+   +   
Sbjct: 395 EGLKNYGVESYHADDYNDILNWLDS--KRDAVVLFLGAGDI 433


>gi|225568660|ref|ZP_03777685.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
 gi|225162588|gb|EEG75207.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
          Length = 449

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 114/354 (32%), Gaps = 45/354 (12%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K Y        +IG P T+A     +    + E+    L  I       RP +
Sbjct: 124 SLLGEIMKNYKEEVYVVGNIGNPYTVAAGKMSEHAVAVAEMSSFQLESI----VSFRPAV 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + +  I P HL+    +E    AK  I     +     LNY+D           A     
Sbjct: 180 SALLNITPDHLNRHHTMEAYIEAKKNIARNQTEEDWCILNYEDEVTREFGKNVRA----Q 235

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVS 304
           +  F   +    +L +     +   +    +   +  V      G H  +N++    + +
Sbjct: 236 VLYFSSRR----KLERGIYLDDGRIIYRNPEEICICHVDELQLPGTHNHENIMAAAAMAA 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    VD   +++  F   E    R      +      ++S   NP +    I  ++   
Sbjct: 292 VYGVPVDKIRESVKAFKGVE---HRIEFVTEKNGVVYYNDSKGTNPDAAIKGIQAMN--- 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIH 423
                R+  ++G     G    S + +  E      +  + L G     +  DA     H
Sbjct: 346 -----RKTVLIGG----GYDKDSSYTEWIESFDG-KVRKLILLGATKEKIAKDAESCGFH 395

Query: 424 VH-YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            + +++T +   L        G+ V++    +S             F  ++N L
Sbjct: 396 DYVFADTFEEAVLMSAEIAGPGEAVLLSPACASWDMFPNYETRGDKFKEIVNSL 449


>gi|91216031|ref|ZP_01253000.1| UDP-N-acetylmuramate--L-alanine ligase [Psychroflexus torquis ATCC
           700755]
 gi|91186008|gb|EAS72382.1| UDP-N-acetylmuramate--L-alanine ligase [Psychroflexus torquis ATCC
           700755]
          Length = 448

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 130/379 (34%), Gaps = 42/379 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +  +   +      +A+ G+ GKTTT  +L   L + +       ++   I        +
Sbjct: 102 RAFILGEITKNLPTLAVAGTHGKTTTSAILAHILKANQIKL---TAFCGGILKNYKTNYI 158

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               +  + E        ++     + P  AVIT++   HL  +   E +  A  + F  
Sbjct: 159 GDGEEVVVIEADEFDRSFLQ-----LHPSAAVITSMDADHLDIYGTSESLTLAF-QEFSN 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G ++ N        L  ++ ++ +        + +AD+ ++     +     + + 
Sbjct: 213 LVPKGHLYAN------STLDLQAQSIAV--------NHSADYSIQHINIENGSYRFDFKS 258

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +  ++ ++     G+H   N    L +          A +        EG  +R+     
Sbjct: 259 KDITLKDIQFSLPGHHNLFNAAAALCLAIDF--KPSYADRFAKALASFEGVQRRFNYVYK 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE- 394
             F  +ID+ Y  +P  + A    +S++ P  +   I          + +  F   LA+ 
Sbjct: 317 SDFLIVIDD-YAHHPKEIDAVHQAISEMHPEKKSVVIFQPHLFSRTKDFADEFAKSLAQF 375

Query: 395 ----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVV 448
               +L +Y      + G     L + +              L   IQ+ +     +V+V
Sbjct: 376 DEVNLLDIYPAREEPIEGITSKYLLELIDHPKKQLI------LKNDIQNRIKNASEEVIV 429

Query: 449 VKSSNSCGFY--RLINLLL 465
           +  +   G    ++  LL 
Sbjct: 430 LLGAGDIGVEASKISKLLK 448


>gi|33240888|ref|NP_875830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|60390538|sp|Q7VAM1|MURD_PROMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33238417|gb|AAQ00483.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 470

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 87/271 (32%), Gaps = 21/271 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +++ +A R       + ITG+ GKTT   ML   L++        G+            R
Sbjct: 105 SEINLAWRALKNTPWVGITGTNGKTTVTHMLNHVLNNSFIESTIGGNVGKAATEIALALR 164

Query: 156 MPVDVD--FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + I EL    +         + P I + TT+ P HL     +E   + K  +
Sbjct: 165 KSTKHKPKWLIMELSSYQI----ETAPEISPEIGIWTTLTPDHLERHGSLENYFAIKRTL 220

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                 +     N DD +     +K+     K ++   +  N++     +   S    +E
Sbjct: 221 IAN---SSIRIYNADDKYL----SKNRLNLPKGLWVSAQKYNSNINQLDFWISSNGMVIE 273

Query: 274 VQLQGKSMEV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              QG  +         G H  QN+L+       +         AL  F    G   R  
Sbjct: 274 ---QGNELFHSSALQLPGDHNLQNLLLVSAAARKIGLSGMAIENALISF---AGITHRLE 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                    + ++S   N  S +  +   S 
Sbjct: 328 KVDKIIDIDIFNDSKATNFDSAEIGLKATSA 358


>gi|312196223|ref|YP_004016284.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EuI1c]
 gi|311227559|gb|ADP80414.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EuI1c]
          Length = 498

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 126/393 (32%), Gaps = 62/393 (15%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDF 162
           L +   ++A+ GS GKTTT  MLT+AL +      A IG     +G    + R     + 
Sbjct: 100 LTAGYRLVAVAGSHGKTTTSAMLTVALRAAGADPTAVIGGEVPQLGGGAVVGRG----EI 155

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E       E       + P + ++T +   H   F     + +  A     +   GT
Sbjct: 156 FVLEA-----DEYGGAFRGLDPAVTILTNVEWEHPDLFPDEAAVRAVFAAFAARVRPGGT 210

Query: 223 IFLNYDDSFFELLKAKSH--ALGIKTIYSFGK---------------------------- 252
           +    DD     +       + G   +  +G                             
Sbjct: 211 LVACGDDPGVAAVLGTLAEGSGGGPRVVRYGFGDGLGWRAVDVVTTGQPDGARPASGSAT 270

Query: 253 SKNADFQLRKWKQCSEQ----SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILT 307
           S +AD       + +      +   V   G+ +  +     G H   N L  L   S L 
Sbjct: 271 SADADGGADGLDRTAAGPPVVTEATVLRDGEPVGTLRLALPGRHTVLNALAVLATASELG 330

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAI--------- 357
             V+T + AL+ +     R +R       G     I + Y  +P  ++A +         
Sbjct: 331 VPVETTLTALAGYTGAARRFQRIGARALPGTGAVEIVDDYAHHPTEIRATLAAARQQAAG 390

Query: 358 -SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             V + + PH   R  A+L D       +   +  + ++ +      +   G H   L  
Sbjct: 391 RQVWAVLQPHTYSRLAALLADFAVAFGDADRLY--VTDIYAARERDDL---GVHACDLAK 445

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +       Y      L   + + L   DV+++
Sbjct: 446 RVRVPAETSYVA-WAELPDRLAADLPGHDVLLL 477


>gi|78065168|ref|YP_367937.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. 383]
 gi|77965913|gb|ABB07293.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. 383]
          Length = 449

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 128/370 (34%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 93  VLAVAGTHGKTTTSSMLAWLLEDSGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 148

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 149 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +       +  EV   
Sbjct: 209 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVTWQ 265

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+ +
Sbjct: 266 VQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVK---RRMEVRGSVDGVTVYDD-F 321

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P +++  I+ L         R +AVL    E    +    +  +++  SL +   V+
Sbjct: 322 AHHPTAIETTIAGLRARIGSENARILAVL----EPRSNTMKLGVMKSQLPASLADADLVF 377

Query: 406 LSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P     H  + +  L   + ++   GD V+V  SN  GF 
Sbjct: 378 GYGAPTGRDALGWNLAEALAPLGEKAHAFDDLHLLVKSVVAAARPGDHVLVM-SNG-GFG 435

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 436 GVHQKLLDAL 445


>gi|46199025|ref|YP_004692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55981051|ref|YP_144348.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
 gi|62900672|sp|Q5SJD2|MURD_THET8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900686|sp|Q72JQ1|MURD_THET2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46196649|gb|AAS81065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55772464|dbj|BAD70905.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
          Length = 417

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 92/305 (30%), Gaps = 58/305 (19%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAIT 114
           +  A ++      V  D          P        GA  L +  +A RL     I+ IT
Sbjct: 51  LEEAYEEVVAAPGVPLDH---------PHLKRLAARGAKVLGEAELAYRLSPTP-IVGIT 100

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKT+T       L +        G+ +  +   +       + +  + EL    L  
Sbjct: 101 GTAGKTSTTLFTAHLLRAHGLRAREGGNVDPPLVSVV------DEAEVAVAELSSFQL-- 152

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                H  RP +AV+  +   HL     +E   +AK  + + L     +  N  D     
Sbjct: 153 --ERVHAFRPRVAVLLNLGVDHLDRHGTVEAYHAAKLNLLKNLTPEDALVYNRLDPKVRR 210

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               S A        +  +  +  +    +   E +   + L G+ ++            
Sbjct: 211 AAEASPARL------YPFTPGSTPRETNLRAALEATRAYLDLLGRPLDPG---------- 254

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                  +   L                      R++    +G    ID+S      +++
Sbjct: 255 ------AVAEAL--------------RTLPEAPHRFQAFARKGGVVFIDDSIATRTEAVR 294

Query: 355 AAISV 359
           AA+  
Sbjct: 295 AALEA 299


>gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL2A]
 gi|122063254|sp|Q46JA8|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL2A]
          Length = 469

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 104/292 (35%), Gaps = 26/292 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TL 153
            ++A+A    +    + ITG+ GKTT   ML   L          G+    +       +
Sbjct: 106 GEVALAWERLTHIPSVGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSKIALENM 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                ++D+ + EL    +      +  V P I + TT  P HL   + +E     K  +
Sbjct: 166 KNNDQELDWLVLELSSFQIEG----SPKVAPTIGIWTTFTPDHLERHNDMESYFKIKRSL 221

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWM 272
              LEK+     N DD +       S    +      G ++ + + Q +K+    +    
Sbjct: 222 ---LEKSSIRIYNSDDQYLS-----SKRKELPKGIWVGTNQQSLYSQYQKFWIDQKGYIF 273

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E   +      + +  G H  QN+L+ +     +  D  +  K++  F        R   
Sbjct: 274 E-DKKQLFHSSILNIPGKHNLQNLLLAIAAAREIGLDDSSIAKSIKSFKSIP---HRLEY 329

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             N    +  ++S   N  S   +I+ L  +        I + G + + G+ 
Sbjct: 330 LGNVNNLSFYNDSKATNFDS---SITALKSVPHPI----ILLAGGIQKKGDF 374


>gi|256842884|ref|ZP_05548372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614304|gb|EEU19505.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 459

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 130/389 (33%), Gaps = 49/389 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L+IP+    +V  AL+         S A  + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVQKAEELNIPIITEPEV--ALSC--------SDAPYVCVTGSNGKTTTVMLTQ 132

Query: 128 IAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             L             +G+    I   +  A      D  + E+    L  +  +   V 
Sbjct: 133 RILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---DILVVEISSFQLLGVTDIDPKVA 189

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + +   +   HL      E   +AK  +            NYD    + + AK   + 
Sbjct: 190 AIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQ---KDILAKEKEVS 243

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + +F +   NAD+ +   +    Q+   +++            G H  QN L+ + I
Sbjct: 244 PAKMQTFSETDHNADYFIGD-EYLESQNEKIMKISD------IKLPGIHNLQNSLVAIAI 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+ AD D     LS F    G   R +         + ++S + N  +   AI    Q
Sbjct: 297 SKIMGADNDDIAAVLSTFT---GAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                    IA        G L + F  D    L   ++  + L G     L DA  ++ 
Sbjct: 354 PEV-----LIA--------GGLDRGFTFDDLVPLFKKHVKSIVLYGETRYLLADAARKAG 400

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    T+          +  GDV++ 
Sbjct: 401 IKDIVIVNTLQEAVPRAWELVEPGDVLLF 429


>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
 gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
          Length = 449

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 127/371 (34%), Gaps = 42/371 (11%)

Query: 91  VLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  AL +          A   +KA+I+A+TG+ GKTTT ++L + L +  K +A  G+  
Sbjct: 81  VREALARNIAVISEIELAFCITKASILAVTGTNGKTTTTKLLGLMLKNSGKKFAVAGNLG 140

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +      A +  +      E+    L  I+      +P  A I  I P HL     +E
Sbjct: 141 VSLSDK---ADLIDEKSIIAAEVSSFQLEFIKNF----KPKTAAILNITPDHLERHHTME 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AKA IFE +     I LN DD +   L   ++      +  F   KN D       
Sbjct: 194 AYVQAKARIFENMNFENCILLNADDKYTNELTEMANKHT--NVCLFSIQKNIDNGA---- 247

Query: 265 QCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   + +  +G  + +         G     N L    +       ++    AL  F
Sbjct: 248 -FLDGEELVISYKGNKINICNKNELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEF 306

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R             ++S   N  +    +    +         I + G   +
Sbjct: 307 ---KGLPHRIEFVRKFKNINYYNDSKATNTDASIKGMEAFDK-------PVILIAGGHDK 356

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSI-HVHYSETMDGLFLFIQ 438
              LS+ +   + E         + L G      +  A+   + ++  ++ M+       
Sbjct: 357 GIPLSE-YMKKVKEHTK-----ELILIGEATERFEKVAIKEGVSNITRAKDMEDAVYKAT 410

Query: 439 SSLVDGDVVVV 449
                GD++++
Sbjct: 411 KFAEAGDIIIL 421


>gi|170702957|ref|ZP_02893793.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
 gi|170132129|gb|EDT00621.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
          Length = 461

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 126/372 (33%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
                 E + A+        +  FG                 E     V  Q + +  V 
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDE--RFAVYSQSERVGAVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVK---RRMEVRGSIDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L     H   R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIETTIAGLRARIGHQNSRILAVL----EPRSNTMKLGVMKAQLPASLADADL 387

Query: 404 VWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L DAL P        + +  L   +  +   GD V+V  SN  G
Sbjct: 388 VFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLVM-SNG-G 445

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 446 FGGVHQKLLDAL 457


>gi|294012781|ref|YP_003546241.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
           japonicum UT26S]
 gi|292676111|dbj|BAI97629.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
           japonicum UT26S]
          Length = 444

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 127/394 (32%), Gaps = 64/394 (16%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G+ +    +        +PV G  + L AL + ++      K  ++ ITG+ GK+TT  +
Sbjct: 77  GVPLNKHPIAMHAKLAGVPVIGDIE-LFALARPSL-----PKHRVVGITGTNGKSTTTAL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   + +        G+    I     L     +    + EL    +     LT  +   
Sbjct: 131 VHHIIETAGIPTRMGGNIGLPILGQTPL----PEGGVYVLELSSYQID----LTQSLDCD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+  I P HL  ++G E   ++KA +F          +  +D     +        ++
Sbjct: 183 VAVLLNITPDHLDRYNGFEGYVASKARLFAMQSAGHVAVIATEDEPSRGI-----FYSVR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G     + Q    +  ++  W  +Q             G H AQN  + + +   
Sbjct: 238 HSREGGNDGVVEVQSSDIEPSAQAGWPALQ-------------GPHNAQNAAVAIAVARA 284

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D  T  + L  +     R +R R          +++S   N AS   A        P
Sbjct: 285 LGIDEATIEQGLQSYASLPHRMQRVR---ELNGVLYVNDSKATNAASTAPA----LAAYP 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH----------VWLSGFHVLALK 415
             +GR+                 H  +  +    N+             +  G       
Sbjct: 338 PVDGRK---------------RLHWIVGGLAKTDNLDECAPWFGHVAQAYTIGEAGPMFA 382

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L   + V  SE +             GDVV++
Sbjct: 383 ELLRPHMAVDDSEMLSAAVRRAARVAQPGDVVLL 416


>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
 gi|122314675|sp|Q0AJD9|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
          Length = 470

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 135/387 (34%), Gaps = 37/387 (9%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V +   +V +     + V G  +    L  +A+         I+AITGS GKTT   M+ 
Sbjct: 77  VAIAEPLVQAALQQGVSVIGDIE----LFAIALDQHAPPGTKILAITGSNGKTTVATMVG 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF--GIFELGMSHLGEIRFLTHLVRPH 185
               +        G+        L + R+         + EL    L      T  +RP+
Sbjct: 133 EMARNTGWDVEVAGNIGLAALDAL-MQRIDTGKWPHLWVLELSSFQL----ETTSSLRPN 187

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV+  ++  HL  +  IEE A+AKA IF     +    LN +D+    +  ++      
Sbjct: 188 AAVVLNLSEDHLDRYRIIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENSKQ--- 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIV 303
              +FG S  A     ++      S + +      +  V      G H A N L  L + 
Sbjct: 245 --LTFGLSAPA--FDDEFGVLPSGSDLWLAQGTTRLMKVSELAVAGLHNAANALAALALC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +  + A    H  +G   R +        T  D+S + N  S  AA++   + 
Sbjct: 301 RAIDLPFEPLLHA---LHIFKGLPHRMQKIAEFNGVTFYDDSKSTNVGSAVAALNGFRK- 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                   I + G   +  + S        E     +   V L G     +  A+   ++
Sbjct: 357 ------NVILIAGGDGKGQDFSP------LEQPVSKHTRGVVLLGRDAEKISQAIQGCNV 404

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            VH   TMD            GD V++
Sbjct: 405 PVHRVATMDEAVRVSFLLAERGDSVLL 431


>gi|114777351|ref|ZP_01452348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552133|gb|EAU54635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 462

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 109/356 (30%), Gaps = 26/356 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                + + G+ GKTTT  +L   L          G     I                + 
Sbjct: 102 PGRHAVVVAGTHGKTTTSSLLAWVLDRADL---SPGFMIGGIPEDFGTGARTGGGPHFVL 158

Query: 166 ELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +  H    ++  +   H   F  +E I +    +   +   G+I
Sbjct: 159 EGDEYDTAFFDKRSKFLHYHARTLILNNLEYDHADIFPDLEAIQAQFHHLIRTVPAAGSI 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282
            +N DD   + + A+     +     +G  ++A++  +      + S   + Q   + ME
Sbjct: 219 VVNGDDDNLDYVLARGCWTPLVRFARYG-GRDAEWHWQ--PLSDDGSRFRLYQHGDEVME 275

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG H   N        S L         A + F    G  +R       G   + 
Sbjct: 276 VSWGMIGLHQVANACAVAATASRLGVSSADIAAAFASFG---GIRRRMTLVGEVGGIRIF 332

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+ +  +P ++   ++     +  G GR   V+        +    H   A         
Sbjct: 333 DD-FAHHPTAISGVVAAARA-AMKGRGRLWVVVE--PRSNTMRSRIHQQ-ALPACFAAAD 387

Query: 403 HVWLSGFHVLALKDA-------LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V         L  +       + R+I  H       + +   I+S   +GD V++
Sbjct: 388 QVVFVPASDRNLNASDVLDVAEVCRAIGPHAVVLADAEAIIAHIRSHASEGDDVLI 443


>gi|297543506|ref|YP_003675808.1| hypothetical protein Tmath_0008 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841281|gb|ADH59797.1| domain of unknown function DUF1727 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 446

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 132/393 (33%), Gaps = 78/393 (19%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           + ITG+ GKTTT  ++   L++  K         N   G+   L +    +     E  +
Sbjct: 51  VMITGTNGKTTTSGLIAHILNTAGKSIVHNKEGANMKTGIATALIKSSDFLGNLKKEAAV 110

Query: 170 SHLGE--IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             + E  +  +   + P+I +IT      L  +  ++            L +   I LN 
Sbjct: 111 FEVDEANMPIVIEDINPNIVIITNFFRDQLDRYGELDITVEKVKNALLKLPQESIILLNA 170

Query: 228 DDSF----FELLKAKSHALGI--------------------------KTIYSFG------ 251
           D+ F     + +K+K    GI                          + IY +G      
Sbjct: 171 DEPFTASIGDEIKSKVFYYGIDDNIEGINSSSFEQKYCPICGHKYEYRRIY-YGQLGDYY 229

Query: 252 ------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  N  F+        +     +  + K        IG +   N+L  +    +
Sbjct: 230 CPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKIFTFKSRLIGIYNVYNLLAAISASIL 289

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +T  KA   + P EGR ++ +    +    LI      NP   ++ +++LSQ + 
Sbjct: 290 LNIDFNTISKATENYWPIEGRLQKTKIKNKKAIINLIK-----NPIGFESTLNMLSQFNK 344

Query: 366 -----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                      + +GR ++ L D            ++L + LS   ++++  SG     +
Sbjct: 345 PLNLLISINDNYADGRDVSWLWD------------VNLEDFLSKTKVNYIITSGLRAEDM 392

Query: 415 KDALPRS----IHVHYSETMDGLFLFIQSSLVD 443
              L  +      +    ++D     I     +
Sbjct: 393 AVRLKYANFDINKIKVINSVDKALDTISELTKE 425


>gi|254480308|ref|ZP_05093556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
 gi|214039870|gb|EEB80529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
          Length = 455

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 124/375 (33%), Gaps = 42/375 (11%)

Query: 84  PVFGVDDVLGALNKLAV--------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P   +D+ + A   LA              +KA II ITGS  K+T  E++       K 
Sbjct: 83  PGIAIDEPVVAHAALAGVKVVGDIDLFVREAKAPIIGITGSNAKSTVTELVGDMARRAKL 142

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+          L  +  +    + EL    L         +   +AV+  ++  
Sbjct: 143 NVGVGGNLGTP-----ALDLLDDERQLYVLELSSFQL----ERAGKLGLAVAVVLNLSAD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +     AK  IF G     T   + DD     L   S  +     +  G+   
Sbjct: 194 HLDRHGNMPRYHQAKHRIFMGCS---TAVAHSDDPLTVPLLEDSVPVVG---WRLGEPAL 247

Query: 256 ADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             F LR+ +     S   E+ +    + +     G H   N L  L +       +D  +
Sbjct: 248 NGFGLRRDQGVECLSHGFELLMPVTELAME----GRHNVANALAALALGHAAGLPLDAML 303

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            +L  F     R +R            +++S   N  +  AA++ +       E   + +
Sbjct: 304 DSLRHFAGLPHRCERVAVIE---AVCFVNDSKGTNIGATNAALTGIGG-----EHNIVLI 355

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
            G   +  +  +             +  HV L G     ++ AL   + V   +TM+   
Sbjct: 356 AGGQGKGADFRE------LRGTVQKHCKHVVLIGEDAPKIEAALADVVEVTRVDTMEQAV 409

Query: 435 LFIQSSLVDGDVVVV 449
              +     GD+V++
Sbjct: 410 ALAEKQASAGDIVLL 424


>gi|300811311|ref|ZP_07091808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497675|gb|EFK32700.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 460

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 111/350 (31%), Gaps = 42/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             + +TGS GKTTT  +        L         +G+      +   +       D  +
Sbjct: 114 PYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLLV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I  I    HL      +    AK  +    + +   
Sbjct: 172 VEMSSFQLMG----VTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYF 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQL-RKWKQCSEQSWMEVQLQGKSM 281
             N+D    + +  +        I +F +    ADF + + +    E+  M++       
Sbjct: 228 LANFDQ---KDILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKI------- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN L+ +GI S++ A  D     LS F    G   R +         +
Sbjct: 278 -ADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFT---GAEHRLQYVTTLDGVKV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +   AI    Q           +L    + G L  S        L   ++
Sbjct: 334 YNDSKSTNIEAATVAIQSFKQPE--------VLLAGGLDRGFLFDSLVD-----LFKKHV 380

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L DA  ++    +   + +             GDV++ 
Sbjct: 381 KAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASKLAEAGDVLLF 430


>gi|325125488|gb|ADY84818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 460

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 42/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             + +TGS GKTTT  +        L         +G+      +   +       D  +
Sbjct: 114 PYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLLV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I  I    HL      +    AK  +    + +   
Sbjct: 172 VEMSSFQLMG----VTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYF 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL-RKWKQCSEQSWMEVQLQGKSM 281
             N+D    + + A+        I +F ++   ADF + + +    E+  M++       
Sbjct: 228 LANFDQ---KDILAREEKATKAKILTFSENDPVADFYIGQDYLMHGEEKMMKI------- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN L+ +GI S++ A  D     LS F    G   R +         +
Sbjct: 278 -ADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFT---GAEHRLQYVTTLDGVKV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +   AI    Q              ++   G L + F  D    L   ++
Sbjct: 334 YNDSKSTNIEAATVAIQSFKQ-------------PEVLLAGGLDRGFVFDSLVDLFKKHV 380

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L DA  ++    +   + +             GDV++ 
Sbjct: 381 KAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASKLAEAGDVLLF 430


>gi|78049108|ref|YP_365283.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037538|emb|CAJ25283.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 452

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMG---CWTPVERFGFDASLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 TVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              +    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGSARAITVYDD-FAHHPTAIA---TTLQGLRAKVGAARVVV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P            + +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGEARVVQDVDALLRALGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 RPGDHVVFM-SNG 438


>gi|104773824|ref|YP_618804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|118595661|sp|Q1GAT6|MURD_LACDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|103422905|emb|CAI97567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 460

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 114/350 (32%), Gaps = 42/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             + +TGS GKTTT  +        L         +G+    I     +       D  +
Sbjct: 114 PYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAHAVGNIGCPI--SEVVLNQAGPDDLLV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I  I    HL      +    AK  +    + +   
Sbjct: 172 VEMSSFQLMG----VTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYF 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL-RKWKQCSEQSWMEVQLQGKSM 281
             N+D    + + A+        I +F ++   ADF + + +    E+  M++       
Sbjct: 228 LANFDQ---KDILAREEKATKAKILTFSENDPVADFYIGQDYLMHGEEKMMKI------- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN L+ +GI S++ A  D     LS F    G   R +         +
Sbjct: 278 -ADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFT---GAEHRLQYVTTLDGVKV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +   AI    Q              ++   G L + F  D    L   ++
Sbjct: 334 YNDSKSTNIEAATVAIQSFKQ-------------PEVLLAGGLDRGFVFDSLVDLFKKHV 380

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L DA  ++    +   + +             GDV++ 
Sbjct: 381 KAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASKLAEAGDVLLF 430


>gi|78778407|ref|YP_396519.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711906|gb|ABB49083.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 469

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 132/385 (34%), Gaps = 41/385 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + A L    T +A+ GS GKT+T   L+  L       + I      I        
Sbjct: 104 HRSEILAMLMQTYTTLAVAGSHGKTSTSTFLSTLLELCTHNSSSITGGIIPIYNSNCHL- 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  F + E+  S  G I    +  +  I +I  I   H  +FS + E+ S+  +   
Sbjct: 163 --ANTKFLVAEVDESD-GTI----NKYKSDIGLINNIDFDHCDHFSDLGEVISSFKDFAA 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K   + LN+D                +  +S   +  A + +   +     +  +  
Sbjct: 216 NSKK---LLLNFD------CVTTRSNFYSENNWSNITANKAAYAIIPTEINESHTIGKYY 266

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G  +  +     G H   N+   +    ++  D     K +      +   KR+    
Sbjct: 267 ENGNFISSLDIPIPGLHNLSNITAAIAASRMIGVDFLEIKKNIKYLKLPK---KRFEFRG 323

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSF 388
                 L D+ Y  +P  +KA I +          +    GR IA+           + F
Sbjct: 324 QVDERNLYDD-YAHHPNEIKATIKLGRLFINHKRNNESHNGRLIAIF--QPHRYSRVKQF 380

Query: 389 HIDLAEVLSLYN---ISHVWLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQ 438
             + A  LS  +   I+ ++ +G       +   + D +  ++ +V Y      +     
Sbjct: 381 AKEFALELSKADIIYITSIYAAGEGNEDNINSTIITDLIYKQNKNVSYINNYHEITKKFY 440

Query: 439 SSLVDGDVVVVKSSNSCG-FYRLIN 462
                GD+++   +  C  F+ ++N
Sbjct: 441 ELTQKGDLILNMGAGDCHNFWSILN 465


>gi|227877322|ref|ZP_03995395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256848742|ref|ZP_05554176.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|262045850|ref|ZP_06018814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|293381718|ref|ZP_06627699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|312977598|ref|ZP_07789345.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
 gi|227863178|gb|EEJ70624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256714281|gb|EEU29268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|260573809|gb|EEX30365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|290921765|gb|EFD98786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|310895337|gb|EFQ44404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
          Length = 459

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 130/389 (33%), Gaps = 49/389 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L+IP+    +V  AL+         S A  + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVQKAEELNIPIITEPEV--ALSC--------SDAPYVCVTGSNGKTTTVMLTQ 132

Query: 128 IAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             L             +G+    I   +  A      D  + E+    L  +  +   V 
Sbjct: 133 RILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---DILVVEISSFQLLGVTDIDPKVA 189

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + +   +   HL      E   +AK  +            NYD    + + AK   + 
Sbjct: 190 AIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQ---KDILAKEKEVS 243

Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + +F +   NAD+ +   +    Q+   +++            G H  QN L+ + I
Sbjct: 244 PAKMQTFSETDHNADYFIGD-EYLESQNEKIMKISD------IKLPGIHNLQNSLVAIAI 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+ AD D     LS F    G   R +         + ++S + N  +   AI    Q
Sbjct: 297 SKIMGADNDDIAAVLSTFT---GAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                    IA        G L + F  D    L   ++  + L G     L DA  ++ 
Sbjct: 354 PEV-----LIA--------GGLDRGFTFDDLVPLFKKHVKSIVLYGETRYLLADAARKAG 400

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    T+          +  GDV++ 
Sbjct: 401 IKDIVIVNTLQEAVPRAWELVEPGDVLLF 429


>gi|119026118|ref|YP_909963.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|166222958|sp|A1A2E8|MURC_BIFAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118765702|dbj|BAF39881.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 521

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 140/411 (34%), Gaps = 64/411 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KTYACIGSYNNHIGV 149
           ++  + A L +    + + G+ GKTTT  ML   L +         +YA  GS     G 
Sbjct: 117 HRSDILALLMNAKRAVTVAGAHGKTTTSSMLAHILVNAGEGELADPSYAIGGSIQGKDGA 176

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L         +  + E   S     ++      P IA+IT     HL ++   +   +A
Sbjct: 177 ILDGGHAGKG-NVLVAEADESDGSFAKY-----HPQIAIITNSEADHLDHYGTQDNYRAA 230

Query: 210 KAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNAD---------FQ 259
             +       T  + +  DD     +L+A    +  +TI  +     A+          +
Sbjct: 231 FVD--HAGHATKAVIMCGDDEGNLAVLRALDATVAGRTIV-YSTRNAAELGDLNGATLVR 287

Query: 260 LRKWKQCSEQS--WMEVQLQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           +    + +E       + + G       + + V     G H A+N    +   ++L  DV
Sbjct: 288 IESESETAESGAEHFTLHIPGGLIGEEERRIAVTLTVPGIHNARNASAAIIAAALLGMDV 347

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           + A  A++ F    G  +R++        T++D+ Y  +P  + A +    +  P  + R
Sbjct: 348 ERASAAVTSFL---GAARRFQVRGTVSQVTVVDD-YAHHPTEIAALLDAARRRYPQSKIR 403

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSET 429
            I        +   ++ F  + A+ L+      V ++G F     ++  P        + 
Sbjct: 404 VIF----QPHLFSRTRFFSSEFAQALAK--ADDVIVTGIFPAREKQEDFPDVTPATIVDE 457

Query: 430 M-----DGLFLFIQSS-------------LVDGDVVVVKSSNSC-GFYRLI 461
                 +    +I+                  GDV+    +        +I
Sbjct: 458 ALKLEHEPAKDWIRGVEDMHTAAQMMVMRAHHGDVIFTVGAGDITQMDEVI 508


>gi|186477373|ref|YP_001858843.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
 gi|184193832|gb|ACC71797.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
          Length = 469

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 129/374 (34%), Gaps = 32/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  MLT  L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTTSMLTWLLEDAGMNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGIGRVVSN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   + + A+        +  FG                 E     V   G+ + VV 
Sbjct: 221 GREVALDRVLARG---CWSEVERFGVEGGWQALPAEDGVAVDE--RFAVYHNGERVGVVD 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N +  +     +      A K+LS F   +   +R     +    T+ D+
Sbjct: 276 WQVQGEHNRMNAIAAIAAARHIGVPPAQAAKSLSTFRNVK---RRMEVRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  ++ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 333 -FAHHPTAIQTTVAGLRTRIGRTNTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 387

Query: 404 VWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P          +D L   + ++   GD V+V  SN  G
Sbjct: 388 VFGYGAPSGKDALGWNLAEALAPMGDKAQAFNEIDSLVKAVVAAAQPGDQVLVM-SNG-G 445

Query: 457 FYRLINLLLEEFPA 470
           F  +   LL+   A
Sbjct: 446 FGGVHQKLLDALSA 459


>gi|319899159|ref|YP_004159252.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           clarridgeiae 73]
 gi|319403123|emb|CBI76681.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           clarridgeiae 73]
          Length = 471

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 116/406 (28%), Gaps = 42/406 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +FI   +  G  L       V       +I + G  +  V      L            +
Sbjct: 65  EFIALILAPGVPLTYPRPHWVVEKARQENIEIIGDIELFVRARNLFLQQNDFSDQDVPFV 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L+  L  +       G+    I       +  V     + E     
Sbjct: 125 AITGTNGKSTTTALLSHLLEKMGYDVQTGGNIGTAIL----TLKPFVKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     L   ++P I ++  + P H+      E     K  +   + K     ++ D   
Sbjct: 181 I----ELAPSLQPTIGLLLNLTPDHIDRHGSFELYGQIKGRV---VSKASNALISVDSLV 233

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHG 287
              L  K    G + I    K +     ++            V+   +     +  +   
Sbjct: 234 CRALYQKLFDEGYQ-IKPVSKER----FIKNGFYVEGTKLFSVRYGHRHLLADLANMTSL 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A+N LM L  + +L                  G   R +     G    I++S  
Sbjct: 289 RGSHNAENALMALATLQMLKITTSEISDIEEHLASYLGLAHRMQEVCKIGSILFINDSKA 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +   A++  + I          V G   E G  S             Y I   +L 
Sbjct: 349 TNAEASAPALATFNNIF-------WIVGGQAKEGGIDSLKGF--------FYKIRKAYLI 393

Query: 408 GFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G            A P S+ +     +               V++ 
Sbjct: 394 GTAAENFARIIGSAFPFSMSLTLENAVREAASDAARDTTQDAVILF 439


>gi|298507099|gb|ADI85822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens KN400]
          Length = 452

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 136/401 (33%), Gaps = 42/401 (10%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            +D  DF        A  VVV+  +      L        +V+  +   +        A 
Sbjct: 60  RHDEADFAA------AETVVVSPGVPQESPYLQAARQAGREVITEIELASRF----ITAP 109

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITG+ GKTTT  +     +         G+  N +   +T       VD  + E+  
Sbjct: 110 LVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPLIELVTTG---AAVDRVVVEISS 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  IR      RP +AV+  I   HL  ++  +E   AKA IFE    +    LN DD
Sbjct: 167 FQLEWIR----SFRPTVAVLLNITEDHLDRYATYQEYIDAKARIFENQTASDWAVLNVDD 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGI 288
                L  ++ A     ++   + +                      + +          
Sbjct: 223 PIVAGLTGRTRAA----VFPMSRQREL---AEGIFYRDGVIIFRHAGRQERFPTDRFRIT 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N++ +L    +L  D D A+  +  F    G   R             ++S   
Sbjct: 276 GVHNIENIMASLAAALLLGCDADRALACVEAFG---GLPHRMELVRELDGVRYFEDSKAT 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S++ A++  + I+    G+         + G  +      LA +++   + H+ L G
Sbjct: 333 NVGSVEKALASFNDITLIAGGK--------DKGGSYAP-----LAGLVAER-VRHMILIG 378

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +   L        + T++       S    G VV+ 
Sbjct: 379 EAKDRMARELGHLTDTRMTVTLEDAVELAASLTQPGGVVLF 419


>gi|149922806|ref|ZP_01911230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
 gi|149816349|gb|EDM75851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
          Length = 455

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 109/329 (33%), Gaps = 32/329 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY--- 143
           L  L             ++  ITG+ GKTTT  +L    S     + +      G++   
Sbjct: 33  LPVLAAAWHGW-PGEALSLAGITGTNGKTTTAHLLGAIASHPRGGRPHLRLGTTGNWLVD 91

Query: 144 -----NNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                      P+ L  +  +        G+ E+    L + R     +R     +T+ +
Sbjct: 92  REVHAGFTTPFPVELQALLAEAHDRGARCGVMEVSSHALAQGR--AKPLRYRAVALTSFS 149

Query: 194 PAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSF- 250
             HL     +     AK E+    L   G      +     E   A + A G++  +   
Sbjct: 150 QDHLDFHPDMAAYLEAKCELARRHLHVDGLAVAPLEQGRASEAFLAAAEAAGVERRWRTA 209

Query: 251 ----GKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               G    A  ++      Q  E + + V     ++++    +G     N+++T+ +  
Sbjct: 210 RSAAGAGAKAQLRVEAQLPLQPGEGTAVRVATPAGALDLRSPLVGAFNLDNLMVTVALAL 269

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +DT   AL       GR +        G    +D  Y   P ++  ++  L    
Sbjct: 270 GLDFGLDTIADALRAATGAPGRLEAVALPGVAGPAVYVD--YAHTPDAVARSLEALEHAR 327

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
               GR + VLG   +     +    ++A
Sbjct: 328 RARGGRTVVVLGCGGDRDPSKRPLMGEVA 356


>gi|323142004|ref|ZP_08076855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413536|gb|EFY04404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 466

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 109/354 (30%), Gaps = 37/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   I AITG+ GKTTT  ++   L  + +  A  G+    + +   +  +P D  
Sbjct: 111 GYRLYGGHIAAITGTNGKTTTTTIVGEMLKRLPEPSAVGGNIG--LALSKEVESLPQD-G 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +   EL    L ++        P IAV+  + P HL     +E    AK  IF    +  
Sbjct: 168 WLAAELSSFQLEKVSSFC----PDIAVVLNLTPDHLERHHTMEAYGEAKKNIFRQQGEVQ 223

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNYDD       A++       +  F + +       +     +     +   GK  
Sbjct: 224 VTVLNYDDPIVRTWGAETKG----RLCYFSRKEK-----LQQGIYMQDGNFIISWDGKQE 274

Query: 282 EVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V      H  G H  +N+L  +         +      L  F   E    R        
Sbjct: 275 TVCNISELHLFGGHNEENVLAAIACGFFAGVSISDMADVLRNFRSIE---HRIEYVATID 331

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   N  S   A+          +G  I + G   ++  L           L 
Sbjct: 332 GVPYYNDSKATNTDSTIKALEAFK------DGHIILLAGGHDKLTPLEPMM------ELV 379

Query: 398 LYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 + L G        A       ++  +++ +       S      VV++
Sbjct: 380 KEKTDALILLGAAKERFNKAAVACGVQNIVLADSFEDAVSKAHSMAHKPQVVLL 433


>gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
 gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
          Length = 432

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 117/371 (31%), Gaps = 56/371 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-------------NHIGVPLTLA 154
             ++ +TG+ GKTT    +   L  + K  A  G+                   +  TL 
Sbjct: 60  MKVVGVTGTNGKTTVTAAIYSFLLDLDKKPALQGTRGLFAEEKRIEEKSMTTPSILETLH 119

Query: 155 RMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            M   +D G    I E+    + + R     +   + V T +   HL     +EE    K
Sbjct: 120 NMKQTMDMGCNYFIMEVSSHAIDQKRI--EGITFALKVHTNVTSDHLDYHGTVEEYRRVK 177

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           +  F          LN DD         +     K  YS+G  + A ++++ +       
Sbjct: 178 SLFFA---DDTMKLLNKDD-------INNITYNPKNAYSYGVDEPATYKVQAFSLL-HGI 226

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKR 329
              ++   +        +G     N++  +G V +LT   +      +  F    GR + 
Sbjct: 227 TAGIKYMQEEATFHSPMMGLFNLFNLMAAIGSVHLLTKRPIQEICDVVENFAGVAGRMEV 286

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                ++    ++D ++      + A +  +             V G     G   +   
Sbjct: 287 V----SRDPLVIVDFAHTH--DGIHAVLESMKDRDIS------VVFGA---GGNRDKEKR 331

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRSIHVHYSETMDGLFLFIQSS 440
             +      Y  + ++++  +         L+D    L    +V  +            +
Sbjct: 332 PLMGAAAGRY-ANKIYVTSDNPRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEA 390

Query: 441 LVDGDVVVVKS 451
           L   +V+++  
Sbjct: 391 LEPNEVLLILG 401


>gi|47779372|gb|AAT38601.1| predicted UDP-N-acetylmuramate: L-alanyl-diaminopimelate ligase
           [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 432

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/399 (15%), Positives = 135/399 (33%), Gaps = 56/399 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G        + V  I    +P     ++LG         +      + AI+G+
Sbjct: 66  IGNALSRG-------NECVEEILDQKLPYVSGPEMLG---------KELKNRNVFAISGT 109

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML        +    IG     I      +         + E          
Sbjct: 110 HGKTTTSYMLAHIFLDQGRE---IGYLVGGISDDFDNSACLGKDPIFVIEADEYDSAFFD 166

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  +   P   +I  I   H   F+ IE++      + + ++ +G I    DDS  + 
Sbjct: 167 KRSKFIHYSPTNLIINNIEFDHADIFNDIEDVKKQFHHLIKIIKSSGNIIYFDDDSTSKE 226

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  K   +    I        ADF+ ++     E    ++             IG H  +
Sbjct: 227 VIEK--GIWCSKIGINSNGVKADFESKELIIDDE--IFQLN--------ELPLIGEHNFK 274

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N + ++    +       +I +L  F   +   +R           + D+ +  +P ++K
Sbjct: 275 NYVCSILAAKLEGISETESINSLKKFKGVK---RRMDFIKEISGIRIYDD-FAHHPTAIK 330

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVLSLYN-ISHVWLSGFHV 411
            + S +         ++I  L    E+G  + S  +H +   +++ +  +          
Sbjct: 331 LSCSAIRN---KYSDKKILGL---IELGSNTMSSGYHKE--NLINSFGSLDEFL------ 376

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             + D        +  ++ + L   ++  + D D++++ 
Sbjct: 377 --MLDPNKNYKINNAFDSENELLKNLEEKIFDYDIILIM 413


>gi|298207703|ref|YP_003715882.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850340|gb|EAP88208.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 450

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 129/381 (33%), Gaps = 44/381 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +          + T + I GS GKTT   M+   ++   K    +      +    
Sbjct: 87  LKIYSYPEFLYEQSKQKTRVVIGGSHGKTTITAMILHVMNYHDKEVDYM--VGAQLEGFD 144

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  + DF + E        I      HL +P+IA+++ IA  H++ F   E     
Sbjct: 145 TMVHLTEENDFIVLEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFENYVEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                + + + G +  N +D   + +  ++ A   K  Y+      A + +   K   E 
Sbjct: 205 FKIFADSMSRGGILVYNEEDPTVKQVAEEATAPTRKHAYT-----TAAYSVENGKTLLET 259

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                        +     G H   N+     I   +  D D   +A+S F   +G  KR
Sbjct: 260 P---------EGPMPIEIFGAHNLNNLAGAKWICQHMGVDEDEFYEAISTF---KGASKR 307

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      +  + Y  +P+ + A    +    P  + + +A L    E+   S S +
Sbjct: 308 LEKITENNNAVVYKD-YAHSPSKVSATTKAVKNQYP--DRKLVACL----ELHTYS-SLN 359

Query: 390 IDLAEVL--SLYNISH-VWLSGFHVLALK-----------DALPRSIHVHYSETMDGLFL 435
            +  +    +L      +       + +K           +A  R   V ++        
Sbjct: 360 AEFLDQYEGALDAADKAIVFYSPDAVQIKQLDEVKAEQINEAFKRDDLVIFT-NPADFKT 418

Query: 436 FIQSSLVDGDVVVVKSSNSCG 456
           ++ +      V+++ SS + G
Sbjct: 419 YLYAQDFKDSVLLLMSSGNYG 439


>gi|86132608|ref|ZP_01051201.1| UDP-N-acetylmuramate-alanine ligase [Dokdonia donghaensis MED134]
 gi|85816850|gb|EAQ38035.1| UDP-N-acetylmuramate-alanine ligase [Dokdonia donghaensis MED134]
          Length = 450

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 123/370 (33%), Gaps = 49/370 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  +L   L++      A +G   N+    L    +    D  + E   
Sbjct: 116 LAVAGTHGKTTTSSILGHLLAATGAPVTAFVGGITNNYNGNL----IQNGSDITVVEADE 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                ++       P I  IT++   HL  +    ++ +   E    +        N   
Sbjct: 172 FDRSFLQLT-----PDILCITSMDADHLDIYEDEADLVATFQEFGSLVAPEKRFVKNG-- 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                       L   T+   G   +A +  +  +        + +     + ++     
Sbjct: 225 ----------LPLAGNTV---GIEDDATYSTQNVRIVDGAYHFDFKYPDGVLKDLKVTLP 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    L +       V    +AL+ +    G  +R+          LID+ Y  
Sbjct: 272 GRHNLFNATTALSMAVAYGTPVAKLPEALASY---AGVNRRFTYRYESQDKVLIDD-YAH 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLY 399
           +P  + A    + ++ P  E   +A+      +   ++ F  D A          +L +Y
Sbjct: 328 HPTEIAAVYQSIKEMYPGEE--VLAIF--QPHLFSRTKDFMADFATELSRFDEVALLDIY 383

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY- 458
               + + G    AL D +  S       T + L   + +S     ++V+  +   G   
Sbjct: 384 PARELPIEGITSQALLDKMTLSNKEIV--TKNRLPEIVTASNKK--IIVMMGAGDIGVEI 439

Query: 459 -RLINLLLEE 467
            ++  +L  E
Sbjct: 440 LKVTKILQSE 449


>gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
          Length = 480

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 136/362 (37%), Gaps = 47/362 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GKT+T EM +  L++   T   +G+    IG  ++ A +    D    EL   
Sbjct: 107 IGITGTNGKTSTTEMTSEMLTACGLTAPAVGN----IGKAVSHAAVDPANDVLCVELSSF 162

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      T  +    A IT IA  HL    GI+  A+ KA++F  ++K   +  N DD 
Sbjct: 163 QL----HFTDSLALDCAAITNIADDHLDWHGGIDNYAADKAKVFHRVKK--ALVYNADDE 216

Query: 231 FFELLK-AKSHALGIKTI-YSFGKSKNADFQLRK-----------WKQCSEQSWMEVQLQ 277
               L  A   A G + + ++  + ++    ++             K  + +   EV  +
Sbjct: 217 RVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMSGIAGGKPGTPEQVAEVS-E 275

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--N 335
              +      +  H+  + L  L +V  L AD + AI +L  F P   R +    A   +
Sbjct: 276 FTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLKRFTPGGHRIQTVATATTQD 335

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G    +D+S   N  + KA+++  +        + +  +      G     F   +AE 
Sbjct: 336 GGSIRFVDDSKATNAHAAKASLNSFAD-------KSVVWIAGGLAKGSR---FERLVAEQ 385

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSE------TMDGLFLFIQSSLVDGDV 446
                I    + G     + DA   S   I +   +       M+            GDV
Sbjct: 386 AHT--IKAAVIIGKDQQPILDAFAASAPDIPLTIIDPANNDVIMERAVDAAGEYAQSGDV 443

Query: 447 VV 448
           V+
Sbjct: 444 VL 445


>gi|313156845|gb|EFR56285.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Alistipes sp.
           HGB5]
          Length = 449

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 122/374 (32%), Gaps = 43/374 (11%)

Query: 88  VDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           V  +  A    ++++  A R   +A  I ITGS GKTTT  ++   +       A  G+ 
Sbjct: 79  VRKLRAAGIPVISEIEFAGRYTGRAKCICITGSNGKTTTTSLIYKIMRDAGMRVALGGNI 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SG 202
                  +       D D+ + EL    L  +    +  R HI V+  I P HL  +   
Sbjct: 139 GESFAYSV----ATGDYDWYVLELSSFQLDGM----YKFRAHIGVLMNITPDHLDRYDHC 190

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------LKAKSHALGIKTIYSFGKSKNA 256
            +  A +K  I +          + DD           L+ K      K   + G     
Sbjct: 191 FQNYADSKMRITQNQTSRDYFVYSGDDEVIWQQLPKYDLRMKQLPFAAKNAVASG---AG 247

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D  L   K  +      V++            G H A N +                 ++
Sbjct: 248 DAFLCDCKFTAAVGKASVEID----TAKLQIKGLHNAYNAMAAALATLAAGIAPAAIRRS 303

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F P E R +  R     G    I++S   N  S+  A+  +         R +  + 
Sbjct: 304 LYGFAPVEHRLEPVR---ESGGVLWINDSKATNVDSVYYALESMK--------RPVVWIA 352

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFL 435
              + G           +  +   +  +   G  +   L++       V  ++++D    
Sbjct: 353 GGTDKGNDYGPL-----KDFAREKVHTLVCMGIDNAKLLREFTGVVPEVISTDSLDAAMT 407

Query: 436 FIQSSLVDGDVVVV 449
             +++   GD V++
Sbjct: 408 AAKAAARPGDAVLL 421


>gi|153002099|ref|YP_001367780.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
 gi|151366717|gb|ABS09717.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
          Length = 463

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 128/363 (35%), Gaps = 47/363 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L +      F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGK----TAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWP 223

Query: 227 YDDSFFELL-------KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +         + +++ L   T   +GK+ + D               EV   G+
Sbjct: 224 ADSHAVKQTIDMGCWSEQETYHLAESTSGWYGKALSDDCH-----------RFEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  ++    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPK---RRLELLGTVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 VSVYDD-FAHHPTAIA---TTLKGMRAKVGQSKITVV-----LEPRSNTMKSGVHKDTL- 379

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  + I V     +D +   + ++   GD +VV  
Sbjct: 380 AFSMMQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVM- 438

Query: 452 SNS 454
           SN 
Sbjct: 439 SNG 441


>gi|221194801|ref|ZP_03567858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
 gi|221185705|gb|EEE18095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
          Length = 472

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 139/406 (34%), Gaps = 54/406 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----------ARLRSKATIIAITGSV 117
           VV  TD V    SL I   GV D        A            A   S    IAITG+ 
Sbjct: 63  VVTGTDEVCGTYSLCIASPGVPDTSALFLSAAAHSQEIIGEPEFAFRESPEKWIAITGTN 122

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++T  L +  +    +G+    I   L+ +R P +  + + EL    L  I  
Sbjct: 123 GKTTTTTLVTKILQTAGQKAISVGNIGRTITDELS-SRTPDE--WFVAELSSFQLATIAR 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L     P  A +  I P HL     +   A+AK  IFE  +      ++  D +      
Sbjct: 180 L----HPKTAALLNITPDHLEWHGTLAAYAAAKERIFENFDIHDLAVVSDLDEYCRACAQ 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMA 293
           +  A  I+  +   +         +         + V+  GK  E++        G H A
Sbjct: 236 RLEARHIRVCHLNTEDPK-----TEHAAFIRDGVLVVRRSGKETELIRAADLKIHGLHNA 290

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +      D  +   AL  F   E R +  R          +++S   N  ++
Sbjct: 291 LNALAASALALEAGVDPVSVRHALLDFEALEHRIEPVREVS---GVLYVNDSKATNTDAV 347

Query: 354 KAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + +++             + +LG      ++G L+ + +          +       G  
Sbjct: 348 EKSLTAFPTRGV------VLLLGGHDKGTDLGSLAAAVNR---------SCKTAICYGAA 392

Query: 411 VLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + +AL          +HV  +  M   F       + GDVV++
Sbjct: 393 GPRIAEALEVEKTKQHSDLHVVSAPHMKEAFEAATKRAMAGDVVLL 438


>gi|160876819|ref|YP_001556135.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|160862341|gb|ABX50875.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|315269021|gb|ADT95874.1| UDP-N-acetylmuramate [Shewanella baltica OS678]
          Length = 463

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 135/380 (35%), Gaps = 52/380 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L +      F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGK----TAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWP 223

Query: 227 YDDSFFELL-------KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +         + +++ L   T   +GK+ + D               EV   G+
Sbjct: 224 ADSHAVKQTIDMGCWSEQETYHLAESTSGWYGKALSDDCH-----------RFEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  ++    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPK---RRLELLGTVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 VSVYDD-FAHHPTAIA---TTLKGMRAKVGQSKITVV-----LEPRSNTMKSGVHKDTL- 379

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  + I V     +D +   + ++   GD +VV  
Sbjct: 380 AFSMMQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVM- 438

Query: 452 SNSCGFY----RLINLLLEE 467
           SN  GF     +L+  L + 
Sbjct: 439 SNG-GFGGLHKKLLAALEQR 457


>gi|295692688|ref|YP_003601298.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           crispatus ST1]
 gi|295030794|emb|CBL50273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus ST1]
          Length = 459

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 134/386 (34%), Gaps = 43/386 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +     MV     L+IP+    +V  AL+         S A  + +TGS GKTTT  +  
Sbjct: 83  IPYENPMVQKAEELNIPIITEPEV--ALSC--------SDAPYVCVTGSNGKTTTVMLTQ 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L    +  A       +IGVP++ +       D  + E+    L  +  +   V   +
Sbjct: 133 RILDHHLQKSAHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLLGVTDIDPKVAAIV 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +   +   HL      E   +AK  +            NYD    + + AK   +    
Sbjct: 193 DIYNNV---HLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQ---KDILAKEKEVSPAK 246

Query: 247 IYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + +F +   NAD+ +   +    Q+   +++            G H  QN L+ + I  I
Sbjct: 247 MQTFSETDHNADYFIGD-EYLESQNEKIMKISD------IKLPGIHNLQNSLVAIAISKI 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + AD D     LS F    G   R +         + ++S + N  +   AI    Q   
Sbjct: 300 MGADNDDIAAVLSTFT---GAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQPEV 356

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IH 423
                 IA        G L + F  D    L   ++  + L G     L DA  ++    
Sbjct: 357 -----LIA--------GGLDRGFTFDDLVPLFKKHVKSIVLYGETRYLLADAARKAGIKD 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    T+          +  GDV++ 
Sbjct: 404 IVIVNTLQEAVPRAWELVEPGDVLLF 429


>gi|217974677|ref|YP_002359428.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
 gi|217499812|gb|ACK48005.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
          Length = 463

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 127/363 (34%), Gaps = 47/363 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L +      F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGK----TAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWP 223

Query: 227 YDDSFFELLKA-------KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +           +++ L   T   +GK+ + D               EV   G+
Sbjct: 224 ADSHAVKQTIEMGCWSEQETYHLAESTSGWYGKALSDDCH-----------RFEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  ++    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPK---RRLELLGTVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 VSVYDD-FAHHPTAIA---TTLKGMRAKVGQSKITVV-----LEPRSNTMKSGVHKDTL- 379

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  + I V     +D +   + ++   GD +VV  
Sbjct: 380 AFSMMQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVM- 438

Query: 452 SNS 454
           SN 
Sbjct: 439 SNG 441


>gi|320334318|ref|YP_004171029.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319755607|gb|ADV67364.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 937

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 126/389 (32%), Gaps = 56/389 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------- 157
           +  II+ITG+ GK+TT  M+   +    K      S   ++   L +             
Sbjct: 522 RMPIISITGTNGKSTTSRMVAHIMRHAGKVVGLTTSNGIYVNGELIMTGDTTGPKSAKVI 581

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAE 212
               +V+  + E   +  G +R      R  +  +  I P HL       +E++A  K  
Sbjct: 582 LSDPNVEVAVLE--TARGGILREGLAFDRADVGAVLNIQPDHLGVKGIKTVEDLAWVKGL 639

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E +  TGT  LN DD     ++AK+       +  F             +  ++    
Sbjct: 640 VVEVVTDTGTSVLNADDPLTLAMRAKAKG----RVTFFSMRGGIAVSPELQQHINDGGTA 695

Query: 273 EVQ--------------------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            V+                    ++ + +     G       N L    +      ++  
Sbjct: 696 VVREPTVLGDELVLYEDGQRLPIMRARDIPATLGGFAEVNIANALAAAAMAVAQGVELPV 755

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              AL  F          R  L +G    +   Y  NP+ ++    ++  + P   GR I
Sbjct: 756 IRAALGSFS-TSFEQSPGRLNLYEGHPFRVLLDYAHNPSGLEYLRDLVQHMRPR-RGRVI 813

Query: 373 AVLG--------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            V+G        DM  MGE++     ++  ++    +      G     + +    +   
Sbjct: 814 GVVGVAGDRRDDDMRRMGEIAAEAFDEI--IIREDELRRGRAPGEGARLVAEGARSAGFA 871

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             H+    +          +   GD+VV+
Sbjct: 872 DEHLTTILSEPDAVDHALRAARQGDLVVL 900


>gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga
           tractuosa DSM 4126]
 gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga
           tractuosa DSM 4126]
          Length = 455

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 131/378 (34%), Gaps = 51/378 (13%)

Query: 87  GVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V+ V  AL K          A   +K  IIAITG+ GK+TT  +    L     +    
Sbjct: 76  NVEIVKKALGKNIPVIDELEFAFGFTKGKIIAITGTNGKSTTTMLTYHLLKEAGLSVGLG 135

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+    +   L      +D D+ + E        I    +  +PHIA++  I P HL  +
Sbjct: 136 GNIGKSMAGQLV----DIDFDWWVLECSSFQ---IDGFVNF-KPHIAILLNITPDHLDRY 187

Query: 201 S-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E   ++K  +F+   K     L  +D          H   +K  +S   SK  +F+
Sbjct: 188 DYKVENYVASKFSLFKNQGKEDFALLYTEDKLI-------HDYQVKHPFS---SKLLEFK 237

Query: 260 LRKW---KQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTA 313
                     +  S + V L  +        +   G H   N + ++    +     D  
Sbjct: 238 FEDIPYEGAYANPSGIIVNLDKQRHTFSQDLLTIKGKHNQTNAMASILTAKLTKIKNDKI 297

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            ++L  F   +    R     N      I++S   N  ++  A+   +        R I 
Sbjct: 298 SESLPKFKSIQ---HRLESVGNIHGIEFINDSKATNVDAVYYALDAFT--------RPII 346

Query: 374 -VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMD 431
            ++G + +  + SQ             N+  +   G     +K+    R   +  +++M 
Sbjct: 347 WIVGGVDKGNDYSQLD-------AVSTNVKAIICLGKDNEKIKEHFKSRCPIIEETQSMQ 399

Query: 432 GLFLFIQSSLVDGDVVVV 449
                      D +VV++
Sbjct: 400 DAVEMGYKLSKDREVVLL 417


>gi|34497121|ref|NP_901336.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34102978|gb|AAQ59342.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 456

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 130/380 (34%), Gaps = 44/380 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTY-----ACIGSYNNHIGVPLTLARMPVDV- 160
              ++A+ G+ GKTTT  ML   L                ++     +P   A  P  V 
Sbjct: 102 DKWVLAVAGTHGKTTTSSMLAWILEDAGLAPGFLIGGIPENFGVSARLPGAPALDPASVS 161

Query: 161 DFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            F + E            +  V  RP  A++  +   H   F+ +  I +    +   + 
Sbjct: 162 PFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLAAIETQFHHLVRTIP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I  N  ++  + + A+      +    FG   +A +QL    +       +V L G
Sbjct: 222 GNGRIVSNGREANLDRVLARGCWTPAER---FGV--DAGWQLGALHEDGG---FDVLLNG 273

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +    V    +G H   N +  +         V  AI ALS F   +   +R       G
Sbjct: 274 EQQGTVRWALMGEHNRLNAIAAIAAARHAGVAVKDAIDALSRFANVK---RRMEVKGVAG 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQSF 388
             T+ D+ +  +P ++   +  L      G+ R +AV         LG M +    S + 
Sbjct: 331 GVTVYDD-FAHHPTAIATTLEGLR--RKVGDARILAVLEPRSNTMKLGTMKDALPGSLA- 386

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              LA+ +        W  G  +  +                D L   I +    GD V+
Sbjct: 387 ---LADKVFCSAAGLNWNPGEALQVM------GAKAQTFSDFDALLGAIAAEAKPGDHVL 437

Query: 449 VKSSNSCGFYRLINLLLEEF 468
           V  SN  GF  +   LL++ 
Sbjct: 438 VM-SNG-GFGGIHQKLLDKL 455


>gi|167756854|ref|ZP_02428981.1| hypothetical protein CLORAM_02403 [Clostridium ramosum DSM 1402]
 gi|237734564|ref|ZP_04565045.1| UDP-N-acetylmuramate-L-alanine ligase [Mollicutes bacterium D7]
 gi|167703029|gb|EDS17608.1| hypothetical protein CLORAM_02403 [Clostridium ramosum DSM 1402]
 gi|229382384|gb|EEO32475.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. D7]
          Length = 436

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 107/358 (29%), Gaps = 42/358 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I+I G+ GKTTT  M         KT   IG    H            D  + I E    
Sbjct: 103 ISIAGTHGKTTTTGMAYHLFEEFDKTTVLIGDGTGHAV---------KDSKYFIAESCEF 153

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               + +      P  A+I  I   H+  F  +E    +  +    ++   T+ +  DD 
Sbjct: 154 QDHFLHY-----YPKYAIINNIELDHVDYFGNLERYIESFEKFANQVK--DTVIVWGDDP 206

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIG 289
             + +  K      K +  FG +   D +     + S     +V +  +          G
Sbjct: 207 NIKKINFK------KRVMRFGLNDYNDVRAVNVLENSNGLSFDVYIHNELFGHFNLPYFG 260

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HM  N L  + +  +     D     ++ F   + R        N     +  + Y  +
Sbjct: 261 MHMLYNSLAIITLGYLENMTNDYIQNRMATFEGTKRRYSVTEVGNN-----VYVDDYAHH 315

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P ++K  I       P    + +A+     +       F +D A+ + L +  +      
Sbjct: 316 PTAIKYVIEATRVRYPSK--KIVAIFK--PDRFSRGARFAVDFAKSMDLADYPYFCPFPE 371

Query: 410 HVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYR 459
           + +        + D              +     +     D  V +  SS        
Sbjct: 372 NAVKEEGIDIDIYDIANNLPRAKVIGEDEEAAKELAK--FDNVVFLFMSSKDIYKLEE 427


>gi|289806271|ref|ZP_06536900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 136

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F        S  +   +Q    S++V+    G H   N L    +   + A +      L
Sbjct: 1   FTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGL 60

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           +      GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GD
Sbjct: 61  AALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGD 113

Query: 378 MCEMGELSQSFHIDLAEVLSLYN 400
           M E+G  S++ H+ + E      
Sbjct: 114 MAELGAESEACHLQVGEAAKAAG 136


>gi|94312061|ref|YP_585271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cupriavidus
           metallidurans CH34]
 gi|118595679|sp|Q1LIM4|MURD_RALME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|93355913|gb|ABF10002.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Cupriavidus
           metallidurans CH34]
          Length = 504

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 155/462 (33%), Gaps = 74/462 (16%)

Query: 33  DSRSIAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVN---------TDMVASIGSL 81
           D+R       F    +    + G  F  + +     + +             ++ +  + 
Sbjct: 37  DTREAPANLVFLQAELTTAQFMGGQFTENLLDDIGLVAISPGLSPLEPNTRALLEAAQAR 96

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           SIPV+G  + L A     + A       ++AITG+ GKTTT  +    +    KT    G
Sbjct: 97  SIPVWGEIE-LFAQAIGYLEATSGYAPRVLAITGTNGKTTTTALTGRLIERAGKTVGVAG 155

Query: 142 SYNNHIGVPLTL----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           + +      L+     A +P   D  + EL    L      T  + PH A +  +   HL
Sbjct: 156 NISPSALDKLSACIASATLP---DVWVLELSSFQL----EYTFSLAPHAATVLNVTQDHL 208

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---- 253
                +E  A+AKA IF   EK     LN  D     +  +       T+ +FG      
Sbjct: 209 DWHGSMEAYAAAKARIFGPAEKGCLQVLNRQDPLTMNMARR-----GTTLVTFGTDLPET 263

Query: 254 -----------------------KNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGI 288
                                   +A+ + R+ K+    +   V ++ K +      H  
Sbjct: 264 PGSYGVLREGGMPWLVLAEPDTEADAEQKPRRRKKDDVAADAVVPVRHKRLMPADALHIR 323

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N +  L +   +   ++  +          G   R             D+S   
Sbjct: 324 GMHNATNAMAALALCRAIDLPLNALLHG---LREYRGEPHRVEWVATIDEVEYFDDSKGT 380

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AA+S L +         + + G   +  + S      +A+         V L G
Sbjct: 381 NVGATVAALSGLDK-------HVVLIAGGEGKGQDFSP-LVAPVAQYARA-----VVLIG 427

Query: 409 FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               AL++AL      +  + +++       S    GDVV++
Sbjct: 428 KDAGALREALGATGKPLIDAGSLEEAVEKSASLAEAGDVVLL 469


>gi|188990288|ref|YP_001902298.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732048|emb|CAP50238.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 452

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A  +      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEHVLPGRNTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----QEFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG     D+  +      + S  
Sbjct: 208 LVRTVPARGRLIVNGEDARLAEVLAMG---CWTPVERFGFDPALDWSAQLL--ADDGSRF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G+ + +V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGEEIGQVQWPLLGRHNVLNGLAALAAVQAVGVDPATVMPALARFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
                   T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VLGQAQGITVYDD-FAHHPTAIA---TTLQGLRAKVGTARVLV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P    V    H ++ +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGQAHVAQDVDTLLRMLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|288560299|ref|YP_003423785.1| cell wall biosynthesis protein Mur ligase family
           [Methanobrevibacter ruminantium M1]
 gi|288543009|gb|ADC46893.1| cell wall biosynthesis protein Mur ligase family
           [Methanobrevibacter ruminantium M1]
          Length = 539

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 76/465 (16%), Positives = 147/465 (31%), Gaps = 83/465 (17%)

Query: 5   WTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDF 56
           ++   L  AI G   G      P GF  GI          +         KG        
Sbjct: 20  FSIAQLADAIGGKIYGADDYKSPNGF-TGIFETLNEAVEGDIVIRHWINGKG-------- 70

Query: 57  ILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVD--DVLGALNKLAVAARLRSKATII 111
           +  A  K    ++  T    ++     L+ PV  VD  +   A         L      +
Sbjct: 71  VEIANDKNVACIITLTPKEDALEMASKLAFPVIVVDRIEFANAFALKWTIDNLSPNTQRV 130

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYAC-----------IGSYNNHIGVPLTLARMPVDV 160
            I+G+ GK+T+  ++   L+                   I      +     +++   DV
Sbjct: 131 VISGTNGKSTSSHLIYHILNHCGYNVFTNTDAKSEFNTLIDPMVAKLISEQVISKQDFDV 190

Query: 161 ------------------------DFGIFELGMSH-------LGEIRFLTHLVRPHIAVI 189
                                   D+ + E+               + ++  + P + V+
Sbjct: 191 RKLDSVADLKNLDSEGKPINKGAFDYIVVEVSEVQGWGSDLMKDHAQIMSSAINPDVGVV 250

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +A  H+   + IEE+    + + + + K G + LNYDD     +K  ++  G+   ++
Sbjct: 251 TNVAMDHIGLVNNIEEVFHETSGLVKAINKGG-VVLNYDDENVLAMKDLAND-GVDIFFT 308

Query: 250 FGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSI 305
             +     N D+   K      +S   V      +        G H  +N+L  +     
Sbjct: 309 SMEKDSILNNDYDNDKKVYFDRKSNAIVYDNKNILRYDELPFTGEHFIRNILSAISACIS 368

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK----AAISVLS 361
           L   ++   + +  ++P   R  R           ++ + +  NP  +K    AA  +  
Sbjct: 369 LEIPIEDICEGVKTYNPLSRRFTRLY------DEPIVIDDFAHNPDGIKNTVRAAYDLAE 422

Query: 362 QISPHGEGRRIAVLGDMCEM--GELSQSFHIDLAEVLSLYNISHV 404
           Q          A+ G   E   G  S++    + + L   N   +
Sbjct: 423 QFDKGDLYIACAIRGSRGETLNGLNSEAL-ALVIKELRHRNDDDI 466


>gi|262195186|ref|YP_003266395.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
 gi|262078533|gb|ACY14502.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
          Length = 490

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 130/398 (32%), Gaps = 43/398 (10%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAAR-LRSKATIIA 112
            A++ G+ ++   T     + S  +P         D     + ++ +A R L  +A +IA
Sbjct: 59  AALELGSHVLESFTGADYVLMSPGVPELPEMQAARDAGAEVIAEIELAYRCLHPEAQLIA 118

Query: 113 ITGSVGKTTTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ITG+ GK+TT  +      +          C G+  NH  +            F + E+ 
Sbjct: 119 ITGTNGKSTTTALTGALCQAASDAGAPPTFCGGNLGNHPLIEAVDHPANTAGGFVVAEVA 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               G +       RP++A    I   HL  +  ++  AS K  ++           N  
Sbjct: 179 ----GFMLETCAGFRPNVAACLNITEDHLDRYGTMDVYASMKTRVYRWQRADDFAIANA- 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---- 284
                 L     A G   +  F                 E+  + ++ +    E      
Sbjct: 234 -HCARTLAGAQAAAG--RVLVFDAEAPLPPGTCGAYLSPERDEIVLRPEADGPEHRFPAA 290

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H  +N +       ++    D        F P++ R +R      +G     D
Sbjct: 291 DLPLIGQHNLENAMAAYLAAHLVGVSDDAIRAGARSFRPQKHRMERV---GEKGEVVFYD 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--IDLAEVLSLYNI 401
           +S   N A++ A++    + +       + + G + + G  +  F    D+A        
Sbjct: 348 DSKGTNVAAVAASMRGFPRPA-------VLIAGGVDKGGSYAPMFEALRDVAR------- 393

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
             + L G     ++ A   +   +     + +   ++ 
Sbjct: 394 -GLVLIGEARPLIRAAASEAGAAYPVVDAESMEDAVRK 430


>gi|116073647|ref|ZP_01470909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
 gi|116068952|gb|EAU74704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
          Length = 457

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 107/353 (30%), Gaps = 42/353 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSYNNHIGVPLT 152
            ++AVA    S    I ITG+ GKTT   +L   LS           +G     + +  +
Sbjct: 96  GEMAVAWDALSHRPWIGITGTNGKTTVTHLLQHVLSHAGLQAPMAGNVGHSAAELALACS 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +P   D+ + E+    +         V P I + TT+ P HL     ++   + K  
Sbjct: 156 SGHLPQP-DWIVMEMSSYQI----EAAQQVAPRIGIWTTLTPDHLERHGTLDAYRAIKHG 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSE 268
           +    E+     LN DD     L    H     T  S   +      L     +W    E
Sbjct: 211 LLARSEQ---AVLNADDP---DLCRHHHQWPAATWVSTSPTPPVPCTLWIDPEQWVCSRE 264

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q                   G H  QNML+                 AL  F     R +
Sbjct: 265 QRLFPAD--------ALPLPGNHNRQNMLLVTAAALHAGLPPSAIEAALRCFSGVPHRLE 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       + ++S   N  +    +  ++  +           G   + G+ S+  
Sbjct: 317 PLGLVK---GMRVYNDSKATNYDAAAVGLRAVAAPAVVLA-------GGQTKQGDASEWL 366

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                  L     + V L G     LK  +  +        +D L   ++ +L
Sbjct: 367 ------SLLKERAAAVVLFGHGARELKTLIAGASFDGQVALVDTLDAAVKEAL 413


>gi|206561753|ref|YP_002232518.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
 gi|198037795|emb|CAR53739.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
          Length = 461

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 124/370 (33%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +       +  EV   
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+ +
Sbjct: 278 VQGDHNRMNALAAIAAARHVGVPPAQAAVSLASFRNVK---RRMEVRGSVDGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P ++   I+ L         R +AVL    E    +    +  +++  SL +   V+
Sbjct: 334 AHHPTAIDTTIAGLRARIGRQNARILAVL----EPRSNTMKLGVMKSQLPASLADADLVF 389

Query: 406 LSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P        + +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|268608183|ref|ZP_06141910.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ruminococcus
           flavefaciens FD-1]
          Length = 446

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 43/344 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +  II ITG+ GK+T   ++   L    +     G+    +     +A    D    + 
Sbjct: 109 FRDQIIGITGTKGKSTVTSLIYHILHESGRDTRIAGNIGIPVFD---IAEGVNDDTIVVC 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +      V P  AV   +   HL ++  +E   +AK  I+       T+++
Sbjct: 166 ELSCHQLEYM-----TVSPAKAVFLNLYEEHLDHYGTMENYYNAKKNIYLHQNPYDTLWI 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVV 284
           N         K  +  +   T+    K  NAD  + K K   S+   +E+ ++       
Sbjct: 221 NS--------KLVTDDIPSVTVTVSDKFNNADVFIIKSKVYDSDDGELEIPVK------K 266

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N+ +   +   L    +   KAL  F P      R          +  D+
Sbjct: 267 IKLLGSHNYYNIAIAWDVCRNL-VSRNDFNKALMSFDPLP---HRLEPVGTFKGISWYDD 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S +    +   AI  L  +          ++G M    +     ++ L + L+   ++ +
Sbjct: 323 SIS---TACATAIEALKSVPDVE----TILIGGMDRGID-----YMPLVDYLNKSTVNII 370

Query: 405 W--LSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
               SG  V +L   +       VHY E ++           +G
Sbjct: 371 CMEASGRRVYSLIKSEQFSAPERVHYVEHLEDAVKLASEITPEG 414


>gi|150020139|ref|YP_001305493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
 gi|166224767|sp|A6LJK7|MURD_THEM4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149792660|gb|ABR30108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
          Length = 426

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 110/343 (32%), Gaps = 55/343 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TGSVGK+TT  ++   L+  K      G+    I     L    +  ++ + E
Sbjct: 104 TPFVIAVTGSVGKSTTVSLIYHLLNK-KVRALLAGNIGIPI---AKLLNDNLRANYLVLE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L    F +   +P+I+ I  I P HL+    +E   S+K +I     K      N
Sbjct: 160 ISSFQL----FWSKRFKPNISSILNIYPNHLNWHPDMEHYVSSKFKIASFQSKDDVFVYN 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D +      K  A  +   + F   K                            +  H
Sbjct: 216 PNDEYIRKNLYKVSAKKVPFRFDFSIEK----------------------------LPIH 247

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  +N+     I+  +  +              E    R             ++S 
Sbjct: 248 LRYRQTVENVAAAKTILETMGYEFK-----WEFLEDFEKLPHRMEYVTEINGVKFFNDSK 302

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  ++  AI            +   +   M  +G+     +  LA+++    +  + L
Sbjct: 303 ATNAIAVIRAIENFDD-------KLHLI---MAGIGKNED--YTLLAKIIKE-KVKILAL 349

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     + +     +     +T++     + S    GDV+++
Sbjct: 350 VGPIADEI-EPYLDGVRYFKVDTINQAVNQLFSMASRGDVIML 391


>gi|297623832|ref|YP_003705266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165012|gb|ADI14723.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
          Length = 450

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 91/332 (27%), Gaps = 35/332 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                  A I+ ITG+ GKTT    L+  L+         G+ +        LA +    
Sbjct: 87  WVYRTVDAPILGITGTAGKTTVTRWLSHTLTLAGLDAPAGGNVDP------ALAAVAAPG 140

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L         + P +AV+  +   HL     +    +AK  +   L   
Sbjct: 141 RVLVTELSSFQL----ERCPSLHPRVAVVLNLGRDHLDRHGSLAAYHAAKKRLIAHLTPE 196

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T   N+DD         S A      + F  +                  + +  +   
Sbjct: 197 DTFVYNHDDPLVRAWAEASPA----RTWGFSAAPTP-----GSAAHLADGMLTLHGRPLV 247

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L      +      +     L  F    G   RY          
Sbjct: 248 AVRALQLTGQHHRLNALAVALAAAAWGLGDEAIRAGLESFSGVPG---RYSVVGEVAGVR 304

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S      +++AA++             + +LG   +    ++       E L    
Sbjct: 305 FVEDSIATRTLAVQAALAA-------TPAPVVWLLGGQDKGASFAE------LEALVRDR 351

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           +      G    A    L      H     DG
Sbjct: 352 VVLALCFGEAGPAFAAQLSAWTETHVIPDRDG 383


>gi|119383341|ref|YP_914397.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
 gi|158512585|sp|A1AZK7|MURD_PARDP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119373108|gb|ABL68701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
          Length = 466

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 123/364 (33%), Gaps = 36/364 (9%)

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLR 105
            ++DG    + A+    G+  +       I         VD+ +G   +    A   R  
Sbjct: 62  QNWDG----ISALIASPGIPHLYPKPHPVIARAYALGVPVDNDIGLFFRSFATAEWERFD 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +   +IA+TGS GK+TT  ++   L    +     G+    +           D +  + 
Sbjct: 118 TTPRVIAVTGSNGKSTTTALIHHILKETGRPTQIGGNIGTGVLS----LDPAHDGEVVVL 173

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL        R LT    P +AV T ++P HL    G+    +AK  +F          +
Sbjct: 174 ELSSYQTDLARALT----PDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPD-RAVI 228

Query: 226 NYDDSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----- 279
             D+     L  +         +      +    +   W   + + ++    +G+     
Sbjct: 229 GVDEVEGRYLAGQLGMGAADDRVIRVSSGQK--LEGFGWSVFARKGYLAEYRKGRQVASI 286

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +  +    G H  QN          +        +A   FH  +G   R +     G  
Sbjct: 287 DLRGIQGLPGAHNHQNACAAYAAARAVGIAPREIERA---FHSFQGLPHRSQTVAEIGGV 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  +   A++   +I      R IA  G M + G + ++    L  V+  Y
Sbjct: 344 AWVNDSKATNVDAAAKALAAFPRI------RWIA--GGMGKDGGI-EALAPCLGPVVKAY 394

Query: 400 NISH 403
            I H
Sbjct: 395 LIGH 398


>gi|332982161|ref|YP_004463602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
 gi|332699839|gb|AEE96780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
          Length = 452

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 121/363 (33%), Gaps = 43/363 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A RL     I AITG+ GKTTT  +               G+    +   +   
Sbjct: 96  IGEVELAYRLS-NVPIAAITGTNGKTTTTALTGHIFKLAGVNTFVCGNIGMPMISAI--- 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E+    L  IR+     +PH++ I  I   HL+     +   + K+ IF
Sbjct: 152 EQYGPGDVVVAEISSFQLESIRYF----KPHVSAILNITEDHLNRHGTFDNYIAIKSRIF 207

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                   + LN D+     L    +A     +  F + +  D          + +++  
Sbjct: 208 MNQGPDDYVVLNMDNEPCRQLIELPNA----HVLPFSRKQELDEGA-----MVKDNYIIC 258

Query: 275 QLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +L  +  ++         G H  +N L +  I   +    D   + L  F   E    R 
Sbjct: 259 RLNSREDKICRVNDIKIPGKHNLENALASAAIAYAMGIGPDVIAQGLRTFEGVE---HRI 315

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   NP +   AI  +       +G  I + G M          H 
Sbjct: 316 EFVDEIDGVRFINDSKGTNPDAAVKAIEAV-------DGPIILIAGGM--------DKHA 360

Query: 391 DLAEVLSLYN--ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDV 446
           D    +  ++  +  + L G     +  A  R    +++   ++             GD 
Sbjct: 361 DFTGFIEAFDSKVKALVLLGETADQIASAARRMGFDNIYKVHSLQEAVEQAWHLSSAGDC 420

Query: 447 VVV 449
           +++
Sbjct: 421 ILL 423


>gi|226941971|ref|YP_002797045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Laribacter
           hongkongensis HLHK9]
 gi|226716898|gb|ACO76036.1| MurD [Laribacter hongkongensis HLHK9]
          Length = 456

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 142/429 (33%), Gaps = 49/429 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P     A               ++ GA            + S  +P+    
Sbjct: 36  VVADSREVPPNAGQLAGVA--------AGAELRAGAFSAATFAGCDVLVLSPGVPLATPA 87

Query: 90  DVLGA---LNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
               A   +  + V AR  +     +IAITGS GKTT   +    +++  +     G+  
Sbjct: 88  VAAFAGEVIGDVEVFARAIAPLAIPVIAITGSNGKTTVTSLAGHLVAACGRRGVVAGNIG 147

Query: 145 NHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             +   L       ++ +  + EL    L     L  +     A    I+  HL  +  +
Sbjct: 148 LAVLDALADIEASGELPECFVLELSSFQLETTTSLNAIA----ATTLNISEDHLDRYRDL 203

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
              A +KA +F G    G   LN DD F   +         + ++   +   AD+ L + 
Sbjct: 204 LAYADSKAAVFNG---GGVQVLNRDDLFVRAMA----RPQRRHVWFSLEDAGADYALAE- 255

Query: 264 KQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                     +   G+++        +G H A N L  L +           +  L+ F 
Sbjct: 256 ----RDGRHWLCAGGEALLPFDAMQLVGLHNAANALAALALCEAAGLPRAGLLAGLTTF- 310

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +G   R    L       ID+S   N  + +AA+              + + G   + 
Sbjct: 311 --KGLAHRVEHVLTHEGVDFIDDSKGTNVGATEAALK-------GMTRPVVLIAGGDGKG 361

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
            + S      LA  L+      V L G     ++ AL   ++ +    T++         
Sbjct: 362 QDFSP-----LAPALARIG-RAVLLIGRDAPVVRQALAGLALPLIDCATLEEATRRGFEL 415

Query: 441 LVDGDVVVV 449
              GDVV++
Sbjct: 416 AQPGDVVLL 424


>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
 gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
          Length = 494

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 121/359 (33%), Gaps = 42/359 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +AITG+ GKTTT  ++   L +    YA +G+    I   +    +  DV+    E
Sbjct: 120 DIKWLAITGTNGKTTTVGLVGSILEAAGAKYAVVGNVGEPIVTTV----LKADVEVLAVE 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH + P  AV   +   HL     +E    AKA I+E  +       +
Sbjct: 176 LSSFQL----ETTHTLSPLAAVCLNVDADHLDWHGSVENYRDAKARIYENTQVG--CVYD 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEV-QLQGKSMEVV 284
             D   E + A +  +       +     A  Q+    K   +++++E    Q +++  +
Sbjct: 230 VTDRTVENMVAGAEVIEGARAIGYTLGSPAPSQIGLVEKLLVDRAFVENRHHQAEAVAEI 289

Query: 285 HHGIGY-------HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               G+        + ++ L  + +        +     L  F   +    R        
Sbjct: 290 SDIFGFASEHPSIALVKDTLAAIALTRAYGVSGEAVAAGLRNFKSAK---HRRAVIGKTA 346

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               ID+S   N  + KA+++     S             +       Q  H  +A++  
Sbjct: 347 DVVWIDDSKATNTHAAKASLAGFPPQSVVW----------IAGGDTKGQELHSLVADI-- 394

Query: 398 LYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLF-----LFIQSSLVDGDVVV 448
              +  V + G     + +AL  +   I     +  + +        +  SL    VV+
Sbjct: 395 KDCLRGVVVIGADPTPVVEALQTNAAEIPYVVVDGHEDMMFSVVNEAVALSLPGNTVVL 453


>gi|149173091|ref|ZP_01851722.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
 gi|148847897|gb|EDL62229.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
          Length = 885

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 138/409 (33%), Gaps = 76/409 (18%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-------- 156
                IIA+TG+ GKTTT +++  AL    K     G+    I      A          
Sbjct: 477 NFDVPIIAVTGTNGKTTTSKLIAHALKYSGKNVGLAGTTGIEIDGVTITAGDYSGPEGAR 536

Query: 157 ----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAK 210
                  VD  + E+     G IR        HI ++  +   H+       ++++A  K
Sbjct: 537 VVLREPTVDHAVLEVA--RGGIIRRGLGFEDCHIGILLNVDEDHIGTDGVEDLDDLALVK 594

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           + + E +  +G   LN DD+    LK ++       +  F              Q   + 
Sbjct: 595 STVIEVVRPSGFSILNADDAVVVGLKDRAGGA----VIYFSLDSEN----VTVTQHLTEG 646

Query: 271 WMEVQLQGKSM-----------------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              V L+G  +                  +   GI      N+L  +  +  L   V+T 
Sbjct: 647 GTAVVLEGDDVIIRSNGPPVRVLSILDAPITLRGIVTFNTANVLAAVAALHGLGMAVNTI 706

Query: 314 IKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              +S FHP   +   R        F  ++D  Y  N  ++ A  + L +IS    GR+I
Sbjct: 707 RNGMSTFHPSATQNPGRMNIIDFVTFKVILD--YGHNVPAINALGTALPKIS---NGRKI 761

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDALPRSIH 423
            +       G  +     +    L+     H+ L+         G     +K     ++ 
Sbjct: 762 VIAHG---TGNRTDDNIREFGAALASV-YDHIILADIDPRNRVLGETPELVK---SGALE 814

Query: 424 VHYSE-TMDGLFLFIQ------SSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +SE  ++ +   ++      S +  GD+++V          +  +L 
Sbjct: 815 TGFSEMEIEIIIDPLKAIDRAFSIVQPGDLIMV------QVDEVAPMLK 857


>gi|46580910|ref|YP_011718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601789|ref|YP_966189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|62900546|sp|Q728U6|MURD_DESVH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158513900|sp|A1VBE6|MURD_DESVV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46450330|gb|AAS96978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562018|gb|ABM27762.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|311234601|gb|ADP87455.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris RCH1]
          Length = 433

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 140/452 (30%), Gaps = 92/452 (20%)

Query: 34  SRSIAPQEAFFAI---------------KGPHY-----DGHD----FILHAVQKGAGLVV 69
           +R I P +    +               KG        D  +    F   A   G  +V 
Sbjct: 8   TRGIRPGDIAVVVGTGRSGVAAARLLHAKGARVRVLERDAANVPATFAEWAAGAGVEIVC 67

Query: 70  ------VNTDMVASIGSLSIPVFGVDDVLGA------LNKLAVAARLRSKATIIAITGSV 117
                    D    + S  + V  +   L A      + ++ +A R  S   +IA+TG+ 
Sbjct: 68  GAHDAAHFADAAVVVPSPGVAVATLRPYLPATGGPEVMAEMELAWRELSGEPVIAVTGTS 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +    L +   +    G+    +   +   +     D  + E+    L     
Sbjct: 128 GKTTTVSLCAHMLRTQGLSVFLGGNIGTPLCEYVLEGK---RADVLVIEISSFQL----Q 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                RP +A++  I   HL   + ++E   AK  +F   ++           F E L  
Sbjct: 181 TCSTFRPRVAMLLNITANHLDYHADMQEYIDAKFRLFRCQDEDDLAV------FGEGLAP 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                G+K       ++   F+                             G H   N  
Sbjct: 235 LVDRYGVK-------ARRVTFRATD------------------RFAESRLFGAHNRANAE 269

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       ++ A++A++ F P      R      +G    +++S     ++++ A+
Sbjct: 270 AAWTAAREFGVTLENALQAVATFAPMP---HRLEQVAERGGVLYVNDSKCTTVSALRVAL 326

Query: 358 SVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                       R + +L G   + G+L           L    +  V L G      + 
Sbjct: 327 EAFD--------RPVLLLAGGKFKGGDLEG------LIPLVRERVRAVMLFGASREVFEA 372

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           A    + + +  T++       S+   G+VV+
Sbjct: 373 AWRDVVPMTWDATLEEAVRRAASAARQGEVVL 404


>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
 gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
          Length = 449

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 127/371 (34%), Gaps = 42/371 (11%)

Query: 91  VLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  AL +          A   +KA+I+A+TG+ GKTTT ++L + L +  K +A  G+  
Sbjct: 81  VREALARNIAVISEIELAFCITKASILAVTGTNGKTTTTKLLGLMLKNSGKKFAVAGNLG 140

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +      A +  +      E+    L  I+      +P  A I  I P HL     +E
Sbjct: 141 VSLSDK---ADLIDEKSIIAAEVSSFQLEFIKNF----KPKAAAILNITPDHLERHHTME 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AKA IFE +     I LN DD +   L   ++      +  F   KN D       
Sbjct: 194 AYVQAKARIFENMNFENCILLNADDKYTNELTEMANKHT--NVCLFSIQKNIDNGA---- 247

Query: 265 QCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   + +  +G  + +         G     N L    +       ++    AL  F
Sbjct: 248 -FLDGEELVISYKGNKINICNINELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEF 306

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R             ++S   N  +    +    +         I + G   +
Sbjct: 307 ---KGLPHRIEFVRKFKDINYYNDSKATNTDASIKGMEAFDK-------PVILIAGGHDK 356

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSI-HVHYSETMDGLFLFIQ 438
              LS+ +   + E         + L G      +  A+   + ++  ++ M+       
Sbjct: 357 GIPLSE-YMKKVKEHTK-----ELILIGEATERFEKVAINEGVSNITRAKDMEDAVYKAT 410

Query: 439 SSLVDGDVVVV 449
                GD++++
Sbjct: 411 KFAEAGDIIIL 421


>gi|116513831|ref|YP_812737.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275399|sp|Q04B73|MURD_LACDB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116093146|gb|ABJ58299.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 460

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 42/350 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIA----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             + +TGS GKTTT  +        L         +G+      +   +       D  +
Sbjct: 114 PYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLLV 171

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I  I    HL      +    AK  +    + +   
Sbjct: 172 VEMSSFQLMG----VTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKTSDYF 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL-RKWKQCSEQSWMEVQLQGKSM 281
             N+D    + + A+        I +F ++   ADF + + +    E+  M++       
Sbjct: 228 LANFDQ---KDILAREEKATKAKILTFSENDPVADFYIGQDYLMHGEEKMMKI------- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN L+ +GI S++ A  D     LS F    G   R +         +
Sbjct: 278 -ADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFT---GAEHRLQYVTTLDGVKV 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +   AI    Q              ++   G L + F  D    L   ++
Sbjct: 334 YNDSKSTNIEAATVAIQSFKQ-------------PEVLLAGGLDRGFVFDSLVDLFKKHV 380

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     L DA  ++    +   + +             GDV++ 
Sbjct: 381 KAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASKLAEAGDVLLF 430


>gi|304410633|ref|ZP_07392251.1| UDP-N-acetylmuramate [Shewanella baltica OS183]
 gi|307304730|ref|ZP_07584480.1| UDP-N-acetylmuramate [Shewanella baltica BA175]
 gi|304351117|gb|EFM15517.1| UDP-N-acetylmuramate [Shewanella baltica OS183]
 gi|306912132|gb|EFN42556.1| UDP-N-acetylmuramate [Shewanella baltica BA175]
          Length = 463

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 135/380 (35%), Gaps = 52/380 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L +      F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGK----TAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWP 223

Query: 227 YDDSFFELL-------KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +         + +++ L   T   +GK+ + D               EV   G+
Sbjct: 224 ADSHAVKQTIDMGCWSEQETYHLAESTSGWYGKALSDDCH-----------RFEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  ++    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPK---RRLELLGIVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 VSVYDD-FAHHPTAIA---TTLKGMRAKVGQSKITVV-----LEPRSNTMKSGVHKDTL- 379

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  + I V     +D +   + ++   GD +VV  
Sbjct: 380 AFSMMQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVM- 438

Query: 452 SNSCGFY----RLINLLLEE 467
           SN  GF     +L+  L + 
Sbjct: 439 SNG-GFGGLHKKLLAALEQR 457


>gi|294142404|ref|YP_003558382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
 gi|293328873|dbj|BAJ03604.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
          Length = 476

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 136/381 (35%), Gaps = 42/381 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++AI+G+ GKT+T  ML   L          IG    + GV   L   P    F + E  
Sbjct: 109 VLAISGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGNSP----FFVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V       VI  +   H   F  ++ I      +   +   G I   
Sbjct: 165 EYDSAFFDKRSKFVHYQARTLVINNLEFDHADIFDDLKAIQRQFHHVIRTVPGEGKIIWP 224

Query: 227 YDDSFFELL-------KAKSHALGIKTIYSFGKSKNA-DFQLR--KWKQCSEQSWMEVQL 276
            D    + +       + + +A     + S  K  +A D +         ++    E+  
Sbjct: 225 KDCEAVQQVIDMGCWSEQEVYAGNCADLVSVNKGSSAGDNKGTWSSQLIAADGHKFELFF 284

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G+S  ++    IG H  +N  M +     +      AI+AL+ F P +   +R      
Sbjct: 285 DGESQGILDWALIGQHNVENATMAIAAARHVGVKPLAAIQALAQFEPPK---RRMELIGT 341

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HID 391
                + D+ +  +P ++    + L          +I ++     +   S +     H D
Sbjct: 342 IKGIDVYDD-FAHHPTAIA---TTLQGCRAKVGEAKITII-----LEPRSNTMKSGVHKD 392

Query: 392 -LAEVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            LA  +SL + ++++      + + A  +     + V Y   +D +   + +    GD +
Sbjct: 393 TLANSMSLADEAYLYQGDSIDWDIEAAMEKAELPVSVLY--DIDEIVAAVANKANSGDTI 450

Query: 448 VVKSSNSCGFYRLINLLLEEF 468
           +V  SN  GF  L   LLE+ 
Sbjct: 451 IVM-SNG-GFGGLHKKLLEKL 469


>gi|94969647|ref|YP_591695.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551697|gb|ABF41621.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 118/362 (32%), Gaps = 40/362 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
               +IAI G+ GKTTT  ML+       +  +  IG    + G    +A    D    I
Sbjct: 104 HDREVIAIAGTHGKTTTTSMLSWIFHHAGRNPSFLIGGIAENFGSSFAVA----DGAEFI 159

Query: 165 FELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E               +   P   ++T +   H   +  ++E+ +A   +   + ++G 
Sbjct: 160 IEGDEYDTAFFDKGPKFLHYFPKSLILTAVEFDHADIYKDLDEVKTAFKRLVNLVPRSGC 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I         +    K+       +  +G +  AD+++   +   E++   V   G+   
Sbjct: 220 ILAWDGHPNVDECVTKAFC----KVERYGFTARADWRIVDVEHAPEKTSWRVLRNGEPWA 275

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G +   N      + +    D D   +AL  F   +   +R          T+
Sbjct: 276 HFEFPIAGDYNVLNATAAAAMAAHYAIDTDAIAEALHHFKSVK---RRLEVKAEVKGITI 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +  +P ++   +  L     +   R  AVL         +   H +L + L +   
Sbjct: 333 IDD-FAHHPTAIAETLKALRS--RYAGRRLWAVLEPRSNTLRRNVFQH-ELVQSLRI--A 386

Query: 402 SHVWLSGFHVLALKDALPRSIH----------------VHYSETMDGLFLFIQSSLVDGD 445
             V L+        +A+P                         + D +   I   L  GD
Sbjct: 387 DRVVLA---ATFKSEAIPEKERLDPANVVAELNQLGTPAELHASADKIVAAIAPQLAAGD 443

Query: 446 VV 447
           VV
Sbjct: 444 VV 445


>gi|158834068|gb|ABW81839.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 100/271 (36%), Gaps = 19/271 (7%)

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           LSS + T A        I V   L+ M      F   E+    L  ++     +     V
Sbjct: 3   LSSNQNTTASA------IEVQQILSNMLAHKATFAAMEVSSHAL--VQHRVAALTFAATV 54

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTI 247
            T +   HL     +    +AK  +F G E      +N DD   +    +  +A+ + T 
Sbjct: 55  FTNLGRDHLDYHGDMVTYEAAKKSLFFGHESKKH-IINVDDEVGQRWLPQLPNAVAVSTA 113

Query: 248 YSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +      + A    +K +     + +         E+    +G     N+L+TL  +  L
Sbjct: 114 HHIPSGWQGAWLSAQKIQYHENGALIFFDSSWGKGELQSQLLGAFNVNNILLTLATLLAL 173

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D  +KA S   P  GR + ++     G  T+I + Y   P ++K     L+    H
Sbjct: 174 KYPLDALLKAASKLQPIPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRMH 226

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +G+   + G   +  +  +     +AE L+
Sbjct: 227 CQGKLWCLFGCGGDRDKGKRPLMGKIAETLA 257


>gi|65321239|ref|ZP_00394198.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus
           anthracis str. A2012]
          Length = 323

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 109/323 (33%), Gaps = 35/323 (10%)

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L   +K     G+      V   +A+   + +  + EL    L  +     L +P IA 
Sbjct: 6   MLKEGQKHPVIAGNIGT---VACEVAQDAKENEVVVTELSSFQLMGVE----LFQPKIAA 58

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              +  AHL      +E   AKA IF+   +     +N DD+    L A S    +    
Sbjct: 59  FLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSVINADDADVMALSAYSKGQKVLFST 118

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +      A         C + + +  + +           G H  +N+L  + I  +L  
Sbjct: 119 TKEIEDGA---------CIKDNALYFKAEKVVEVDDIVLPGQHNLENILAAMSIAKLLGV 169

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +     L  F   + R +      N+ F+   ++S   N  + + A+S  +Q +    
Sbjct: 170 SNEAITAVLKRFTGVKHRLEYVTTINNRKFY---NDSKATNMLATEKALSAFTQPT---- 222

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHY 426
                +L    + G                 N+  +   G     L  A  ++    +  
Sbjct: 223 ----VLLAGGLDRGNEFDDLIPYF------KNVKAIVTFGQTAPKLVRAAEKAGLDTIES 272

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            +T+D   +   +   DGDV+++
Sbjct: 273 VDTLDEAVVKAYAHSTDGDVILL 295


>gi|182414448|ref|YP_001819514.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
 gi|177841662|gb|ACB75914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
          Length = 442

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 131/401 (32%), Gaps = 42/401 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G +F   A      LV+ +         L +      + L  L+  +V  R     T+IA
Sbjct: 47  GTEFTAKAASLH-RLVIFSPGFPPEHPWLVLARQAGCECLAELDLASVFWR----GTVIA 101

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TG+ GKTT  E LT AL SI +    +G+  +     +  +         + E+     
Sbjct: 102 VTGTNGKTTLTEFLTHALRSIGRDARSVGNVGHSFAQAVAESNGGTSEQIAVCEVSSFQA 161

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDS 230
             ++      R    + T IA  HL    G+E   +AK  +     +  TGT        
Sbjct: 162 ETLKHF----RASATLWTNIAEDHLERHPGLESYFNAKWNLVLHTRVPATGTA-----HP 212

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +           ++  F +         +W     Q     +L G           Y
Sbjct: 213 LPFVGARGGGVFAGSSVRRFAERYGRPLTGIEWVATEHQPT-NPRLAGTVFAD------Y 265

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N L+           V+    A   F   +    R    + +   T  ++S   N 
Sbjct: 266 PQRENYLLAEAWWRAAGLPVEQLELAAKRF---DLGRHRLALVVERDGATYWNDSKATNF 322

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++AA+   +          + + G   + G+L+   H      ++   ++HV L G  
Sbjct: 323 HAVEAALERFTT-------PVVLIAGGKAKGGDLAGFVHR-----IAPR-VAHVVLIGET 369

Query: 411 VLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
              L      +  V +    T++            GD V++
Sbjct: 370 SEELA-FHCAAFRVAHTRCSTLEDAVRRAAELAEPGDHVLL 409


>gi|39998162|ref|NP_954113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
 gi|62900554|sp|Q748D4|MURD_GEOSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39985108|gb|AAR36463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
          Length = 452

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 137/429 (31%), Gaps = 54/429 (12%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG--------- 93
           F A +G      D    A   G    +    +   +G      F   + +          
Sbjct: 23  FLAAQGARVTVTDLRDEAALAGPLEQLAGHPVSYVLGRHDEADFAAAETVVVSPGVPQES 82

Query: 94  -ALNKLAVAARLRSK----------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             L     A R              A ++AITG+ GKTTT  +     +         G+
Sbjct: 83  PYLQAARRAGREVITEIELASRFITAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGN 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             N +   + L      VD  + E+    L  IR      RP +AV+  I   HL  ++ 
Sbjct: 143 IGNPL---IELVETGAAVDRVVVEISSFQLEWIR----SFRPTVAVLLNITEDHLDRYAT 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--L 260
            +E   AKA IF+    +    LN DD     L  ++ A            +   ++   
Sbjct: 196 YQEYIDAKARIFKNQTASDWAVLNVDDPIVAGLAGRTCAAVFPMSRQRELGEGIFYRDGA 255

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             ++    Q                   G H  +N++ +L    +L  D D A+  +  F
Sbjct: 256 IIFRHAGRQERFP--------TDRFRITGVHNIENIMASLAAALLLGCDADRALACVEAF 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               G   R             ++S   N  S++ A++  + I+    G+         +
Sbjct: 308 G---GLPHRMELVRELNGVRYFEDSKATNVGSVEKALASFNDITLIAGGK--------DK 356

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            G  +      LA +++   + H+ L G     +   L        + T++       S 
Sbjct: 357 GGSYAP-----LAGLVAER-VRHMILIGEAKDRMARELGHLTDTRMAVTLEDAVELAASL 410

Query: 441 LVDGDVVVV 449
              G VV+ 
Sbjct: 411 TQPGGVVLF 419


>gi|153809796|ref|ZP_01962464.1| hypothetical protein RUMOBE_00177 [Ruminococcus obeum ATCC 29174]
 gi|149833974|gb|EDM89054.1| hypothetical protein RUMOBE_00177 [Ruminococcus obeum ATCC 29174]
          Length = 463

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 121/354 (34%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K  ++AITG+ GKTTT  +L   +S  + +   +G+         + A    D  
Sbjct: 115 AYRTGKGRVLAITGTNGKTTTTALLGKIMSDAEDSVFVVGNIGTPYT---SKALEMKDSS 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I        P ++ I  I   HL+    +EE    K  I +      
Sbjct: 172 TTVAEISSFQLETIEEFA----PKVSAILNITEDHLNRHHTMEEYIRVKELIVKNQTAED 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNY+D   E+L+     +  KT+Y          +        +   + ++   + +
Sbjct: 228 YCILNYED---EVLREFGRHIVPKTVYFSS------VRKLDEGIYLDGDLIVLKTADEEI 278

Query: 282 EVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +VH      +G H  +N++    +       V+   K++  F   E    R    + + 
Sbjct: 279 PLVHTGELKLLGQHNFENVMAASAMAYYAGVSVENIRKSICAFTAVE---HRIEYVMEKN 335

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +    I  ++        R   ++G   + G     +         
Sbjct: 336 GVAYYNDSKGTNPDAAIKGIQAMN--------RPTLLIGGGYDKGSSYDEWLNSF----- 382

Query: 398 LYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + ++ L G     +K+A  R         E ++            GD V++
Sbjct: 383 DGKVRYLVLIGQTRDKIKEAAERLGVCPCILCENLEEAVKICAEKANPGDAVLL 436


>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           pealeana ATCC 700345]
 gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 120/356 (33%), Gaps = 47/356 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L   A  ++ A +I ITGS GKTT   ++     +   +YA  G+        L L   
Sbjct: 98  ELFARAVAQTSAKVIGITGSNGKTTVTTLVGEMAKASGSSYAVGGNIGVP---ALDLLLE 154

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           P D    + EL    L      T+ ++   A    I+  H+  +S +E    AK +++E 
Sbjct: 155 PKD--LYVLELSSFQL----ETTYSLQCVAATCLNISEDHMDRYSDLESYRQAKLKLYEQ 208

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              +     N +D+        +         SFG            +         + +
Sbjct: 209 ---SKMAVFNREDTL-------TLPNNPTNQQSFGLDAP--------EGDDWGVSGGMIV 250

Query: 277 QGKSMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           QG S  +       +G H   N++  + + +      +  I+    F    G   R    
Sbjct: 251 QGSSQIMPISDVALVGSHNLANIIAAMALTTAAGIKRECQIEVAKTFL---GLAHRCEVV 307

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +    T +++S   N  +  AAI  LS+      G  I + G   +  +          
Sbjct: 308 ADIDGVTYVNDSKATNIGATVAAIDGLSE----HLGELILIAGGDGKGADFKPLE----- 358

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L  +S + + G     +    P +I V     M             GD+V++
Sbjct: 359 --PVLEKVSQLIVLGKDGDKIAGLKPEAIKV---ANMVEAVAKAHELATAGDIVIL 409


>gi|326387156|ref|ZP_08208766.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208337|gb|EGD59144.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 134/427 (31%), Gaps = 59/427 (13%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      V +  +L  P     D+L AL   A           IA+ G+ GK+T   M
Sbjct: 91  AAIEDTVPEVVAARTLGCPRLSRADLLAALFNRAA--------HPIAVGGTSGKSTVTGM 142

Query: 126 LTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +   L+   +        +         P   AR+    DF + E+  S  G I     L
Sbjct: 143 IGWILTVAGRDPTIMNGAVMKNFVAPEAPFASARVGTGTDF-VAEVDESD-GSIA----L 196

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP IAV+  ++  H      +EE+     +     +         DD     L  ++  
Sbjct: 197 YRPAIAVLNNVSLDH----KSLEELRVLFGDFLARAQAAAIN---ADDPESMALAPRARC 249

Query: 242 LGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNML 297
                  +FG  + A   +     +Q        V  +  G++        G H   N L
Sbjct: 250 A-----LTFGFGETAQISVDPTSIRQGPTTIAATVIDRRSGETHAFTLPQPGRHNLANAL 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +    +  A+ AL  F    G  +R+           + + +  NP  + A +
Sbjct: 305 AALAACDLSGVPLAQAVAALESF---AGLARRFDIVGTTPSGITVIDDFGHNPEKVAATL 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---------VWLSG 408
           + L        GR IA L      G L +    +LAEV +   +           V+  G
Sbjct: 362 TTLKA----HPGRVIA-LFQPHGYGPL-RQMGTELAEVFATR-LDAGDETILTEPVYFGG 414

Query: 409 -----FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                     + D +        +  T       I++    GD +V+  +          
Sbjct: 415 TVDRSVGSERIVDLITADGGKARHIPTRAQAADAIRALARPGDRIVIMGARDDTLSTFAR 474

Query: 463 LLLEEFP 469
            LL   P
Sbjct: 475 ELLASLP 481


>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 454

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 143/393 (36%), Gaps = 42/393 (10%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+V+  +   I S  +    V   +  + ++  A RL  KA I AITG+ GKTTT 
Sbjct: 68  GAQMVIVSPGI--PIDSEIVTKAKVKG-IEVIGEVEFAYRLS-KAPIYAITGTNGKTTTT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L     +        G+    +      A    + D  + E+    L  I+      R
Sbjct: 124 SLLGEIFKNSGVRTYVAGNIGYPLVEAAVKA---GNDDVIVAEISSFQLETIKEF----R 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I+ I  I P HL+    +E   + K  IFE         LNYDD     L  ++    
Sbjct: 177 PVISAIINITPDHLNRHKTLENYINIKGRIFENQSFNEYTVLNYDDKNISSLFDRAKC-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMT 299
              ++ F   K     +       E   + +   G+   ++     +  G H  +N ++ 
Sbjct: 235 --KVFPFSMEK-----ILYRGTYVENGKIVISSNGEKNTIIDINDIYIPGNHNVENAMVA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +  +   DV+     L  F   E    R     +       ++S   NP +   AI  
Sbjct: 288 STMAFLAGIDVNIINTTLKTFKGVE---HRIEFVRSINGVKYYNDSKGTNPDAAIKAIEA 344

Query: 360 LSQISPHGEGRRIAVLGDMCE---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +       +G  I + G   +     E + SF+  + +++ L     +     +  A+K+
Sbjct: 345 M-------KGPIILIAGGYDKGVSFDEFTSSFNGRVRKLILLGETRDLI----YKSAVKN 393

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              R   +    ++D          + GD V++
Sbjct: 394 GFSRE-DITVVNSLDDAVYAAYKMSMPGDNVLL 425


>gi|320161737|ref|YP_004174962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
 gi|319995591|dbj|BAJ64362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
          Length = 460

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 120/363 (33%), Gaps = 53/363 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVD 161
                 +I ITGS GKTTT  ++    S              +IGVPL + R+      D
Sbjct: 106 EEVPCRVIGITGSAGKTTTTTLVGRMASRA-VVAPQKAWVGGNIGVPL-IDRLDEIQPAD 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P +A +  I P HL     +E   +AKA I E    T 
Sbjct: 164 VVVLELSSFQLQWITR-----SPQVAAVLNITPNHLDRHGTMEAYTAAKARILEFQSATD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQG 278
              L  +D+    L+ K        + SFG +  A+          + ++ +   +  QG
Sbjct: 219 IAVLGREDAGAWGLREKVRG----DLISFGLNHPAE---------GKGTFYDNGWLWYQG 265

Query: 279 KSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +E            G H   N+L    I        +  +  +  F        R   
Sbjct: 266 EMVEEALFERGKIALRGTHNLLNVLAACAIGIAAGFPPEALLDGVQGFGGVP---HRLEL 322

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                     ++S    P    AAI    +         + +LG     G   +     L
Sbjct: 323 VREWRGVRWYNDSIATAPERTIAAIRSFEE-------PLVLMLG-----GRDKKLPWDSL 370

Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           A+++    + HV + G     +  A+       R   +   +T+        +   +GDV
Sbjct: 371 ADLIHER-VDHVVVFGEAAEKIAHAIGEVRPGKRPFTLTLCKTVQEAVQAAAAVAEEGDV 429

Query: 447 VVV 449
           V+ 
Sbjct: 430 VLF 432


>gi|74316135|ref|YP_313875.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
 gi|118595702|sp|Q3SMH5|MURD_THIDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74055630|gb|AAZ96070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 474

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 138/400 (34%), Gaps = 55/400 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  AV +G   V        ++  L+           AL     A R      +IAITGS
Sbjct: 89  VAQAVAQGVEAVGDVELFARALAVLNAQ-------RAALPAPQAAMR------VIAITGS 135

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGE 174
            GK+T   M          T    G+    +   L              + EL    L  
Sbjct: 136 NGKSTVTAMCGDMCRMAGLTVCVAGNIGLPVLDALHEIEQGAAPLPQVWVLELSSFQL-- 193

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
               T  +    A +  ++  H+  +  +   A+AKA IF G    G   LN DD     
Sbjct: 194 --ETTSSLDATAAAVLNLSEDHMDRYPDMAAYAAAKARIFSG---NGVQVLNRDDP---- 244

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV--VHHGIGYHM 292
            +  + A+  + + SFG  +        +  C +    E+ L G  +    V    G H 
Sbjct: 245 -RTLAMAIPGRHVVSFGLDRCP--TDENFGLCED----ELCLGGDMLMPLSVLAVPGLHN 297

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N L  L +   L   ++  ++ L  F   +G   R     +    T  D+S   N  +
Sbjct: 298 AANALAALALTRALDLPIEALLRGLMHF---KGLPHRVEKVADIDGVTWYDDSKGTNVGA 354

Query: 353 MKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +AA+        +G GRR  + +LG   +  +          +     N   V L G  
Sbjct: 355 TEAAL--------YGMGRRKAVVILGGDGKGQDFGP------LKAAVAANARAVVLIGRD 400

Query: 411 VLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            +A++ A+  S    Y ++T+             GD V++
Sbjct: 401 AVAIEAAIEDSGVASYRADTLPDAVEQAARLAEPGDAVLL 440


>gi|163854876|ref|YP_001629174.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella petrii DSM 12804]
 gi|163258604|emb|CAP40903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella petrii]
          Length = 458

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 124/375 (33%), Gaps = 39/375 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             A ++A+ G+ GKTTT  ML   L +   +    IG   + + V    AR    V   +
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLRPNFLIGGVAHDLKVS---ARYDPAVRPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   + + G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPERGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           I L    +  + + A+           FG          +          EV   G+++ 
Sbjct: 218 IVLPTGSAALDRVMARG---CWSETVRFGAGG-----AWQAGPADADGAFEVLRHGQAIG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H   N L  L        D    + ALS F   +   +R       G   +
Sbjct: 270 TVRWTLGGEHNRLNALAALAAAEHAGVDPAEGVAALSRFGGVK---RRMELRGTAGGVKV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYN 400
            D+ +  +P +++  +  L      G+ R +AVL    E    +       A +  +L  
Sbjct: 327 YDD-FAHHPTAIETTLEGLR--RQVGQARILAVL----EPRSNTMKLGAMAARLPAALQG 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G                 P        + +D L   +  +   GD V+V  SN
Sbjct: 380 ADRVFCFGARSGKHALGWNPDEVLAPLGERASSYDDLDALVAAVAQAAQPGDHVLVM-SN 438

Query: 454 SCGF----YRLINLL 464
             GF     +L++ L
Sbjct: 439 G-GFGGVHGKLLDAL 452


>gi|283783547|ref|YP_003374301.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis
           409-05]
 gi|297243805|ref|ZP_06927735.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis AMD]
 gi|283441804|gb|ADB14270.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis
           409-05]
 gi|296888226|gb|EFH26968.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis AMD]
          Length = 520

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 125/403 (31%), Gaps = 57/403 (14%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L S  T + + G+ GKTTT  +L+  L  +++        +    I      
Sbjct: 121 HRSDILALLLSAKTGVTVAGAHGKTTTSSLLSHILTVAAVGDLADPSYAIGGSIQAADGT 180

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                    GI  +  +   +  F      P IA++T     HL ++   E    A  E 
Sbjct: 181 VLDGGHAGNGIVMVAEADESDGSF--EKYSPSIAIVTNAEADHLDHYGSSERYREAFVEH 238

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------------ADF 258
                    + +  +D     +        +    ++G                   A  
Sbjct: 239 VSHAVNN--VIICAEDEGARKVLEAMPDNILNKTIAYGNLDTWSLKLSSRVQKLAIFASI 296

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVV----------HHGIGYHMAQNMLMTLGIVSILTA 308
           +    +  S +    + L  K ++                G H A N    +    +L  
Sbjct: 297 EHENEQAVSGREMFTLVLPEKILDEHTKCSNKVQVSLLIPGLHNALNASAAIVAAVLLGM 356

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + + A +    F    G  +R+         T++D+ Y  +P  + A +    +      
Sbjct: 357 NPENAARGAESF---RGASRRFDIRGCVDGVTVVDD-YAHHPTEIAALLRAARRKYTSST 412

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----------------FHVL 412
            R   VL     +   +Q+F  + A+ L+L     V ++G                  ++
Sbjct: 413 LR---VLFQ-PHLFSRTQAFANEFAKSLAL--ADDVIVTGIFPAREKQEDFPNINAETIV 466

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               +    + +   + M    L +      GDV++   + S 
Sbjct: 467 KAAKSQNLDVKIEAVDDMRAAALKLALRAKSGDVLLTVGAGSI 509


>gi|258542968|ref|YP_003188401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634046|dbj|BAI00022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637106|dbj|BAI03075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640158|dbj|BAI06120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643215|dbj|BAI09170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646270|dbj|BAI12218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649323|dbj|BAI15264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652309|dbj|BAI18243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655367|dbj|BAI21294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 471

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 92/276 (33%), Gaps = 26/276 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIA 129
              +     +  IP+    ++L        A R   SKA  + ITG+ GK+TT  +L   
Sbjct: 92  PHPIALKAKAAGIPILSDAELL------YRAVRQSGSKARFVGITGTNGKSTTTTLLAHI 145

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L+  K   A  G+                D    + E+    L  +  L        A +
Sbjct: 146 LAEAKLPVAAGGNLGP----AALALPFLSDNGVYVLEMSSYMLERLDTL----HFDAACL 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             + P HL   +G++  A AK  +F G        +  DD++   + A+      K    
Sbjct: 198 LNLTPDHLDRHAGMDGYAQAKKRVFTGQTDKDLAVIGVDDTWCRAIAAELEHDPAKCETI 257

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G +    +  +        + +         +      G H A+N    + I   L   
Sbjct: 258 SGTNPACSYYGKDGAIWHHSTRI--------AQTGPSLPGTHNAENAAAAIAIARFLGVP 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             T  +A++ F    G   R +   +      +D+S
Sbjct: 310 DATIAQAVASF---PGLPHRQKLVASCNGVDFVDDS 342


>gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 394

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 120/383 (31%), Gaps = 65/383 (16%)

Query: 88  VDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V D+  A++   +A     + +  ++  TG+ GKTT        L    K  A + + N 
Sbjct: 2   VTDIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYK-PALLSTMNT 60

Query: 146 HIGV------------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            +               L L  M  +         I E+        R   + +   + V
Sbjct: 61  TLDGKTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGR--VYGLTFDVGV 118

Query: 189 ITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E    +  + +N     F  L  +        
Sbjct: 119 FLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFLFLADQVA------ 169

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSI 305
                + ++A +      Q +       +  G+ +       IG+   +N +        
Sbjct: 170 -----EQEHAFYGALSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACFR 224

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L A +    K ++      GR +      +   F      Y  N  S++  +SV+ +   
Sbjct: 225 LGASLADIQKGIAK-TRVPGRMEVLTMTNHAKVFV----DYAHNGDSLEKLLSVVEE--- 276

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           H  G  + +LG     GE  ++   D   V++ +    V L+                  
Sbjct: 277 HQTGNLVLILGAPGNKGESRRA---DFGTVINQHPNLTVILTADDPN------------- 320

Query: 426 YSETMDGLFLFIQSSL-VDGDVV 447
             E  + +   I S +    D+V
Sbjct: 321 -FEDPEDISQEIASHITRPIDIV 342


>gi|82703368|ref|YP_412934.1| cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
 gi|82411433|gb|ABB75542.1| Cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 856

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 126/387 (32%), Gaps = 55/387 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-------- 155
             ++  ++A+TG+ GKTTT  M+   L           +   +I                
Sbjct: 465 DDARIPVVAVTGTNGKTTTVRMIANILDCQGLRVGMTSTDGVYIEGQRIDTGDCSGPKSA 524

Query: 156 ----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIAS 208
               +  DVD  + E   +  G +R      R  +AV+T I    HL     + +E++ +
Sbjct: 525 RKVLLHPDVDAAVLE--TARGGLLREGLAFDRCDVAVVTNIGVGDHLGLSYINTVEDLTA 582

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---------- 257
            K  I + ++   G   LN  D F   + A         +  F +  +            
Sbjct: 583 VKRIIVQNVKPGTGVAVLNAADPFVAGMAAHCPG----KVTFFARDPDNPVIAKHRAQRK 638

Query: 258 --FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               +      + +   E +L    + V  +G      +N +  +     +  D      
Sbjct: 639 RVVYVEDDAIVAAEGNFEYRLPFAGIPVTQNGAIAFQIENAMAAIAAGWAVGLDWQIIRG 698

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+ F                   TLI + Y  N  +++A +S + +I    + R + + 
Sbjct: 699 GLANFVSDMQTAPGRFNFFTHRGATLIAD-YGHNVDAIRALVSAIDKIPA--KRRSVVIS 755

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVH 425
           G     G+          E+L       V L           G  +  L+  L ++    
Sbjct: 756 G----AGDRRDEDIRRQTEILGDA-FDEVVLYQDQCQRGRADGEVLSLLRQGLEKAKRTR 810

Query: 426 YSETM--D-GLFLFIQSSLVDGDVVVV 449
             + +  + G       +L +G++ ++
Sbjct: 811 NVKEIYGEFGAIDAAFDNLKEGELCLI 837


>gi|296120286|ref|YP_003628064.1| Mur ligase middle domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296012626|gb|ADG65865.1| Mur ligase middle domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 569

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 127/370 (34%), Gaps = 40/370 (10%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPL 151
           A+      A L + +  + I G+ GK+TT  M+   LSS    +    I + N+      
Sbjct: 144 AIPYHIALAHLINSSRSLCIAGTHGKSTTTAMVAWMLSSSLAPEITDSIVNTNHPWRASF 203

Query: 152 TL--------------ARMPVDVDFGIFELG---MSHLGEIRFLTHLVRPHIAVITTIAP 194
            +                M      G +  G   ++   E R       P +A I +  P
Sbjct: 204 IMGGELIAPLPLSKPDQAMATLHRSGSYVEGDWLVAEACEYRQHFLAYEPELAAILSCEP 263

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H   F+   E   A ++    ++  G +    D          + A       S G +K
Sbjct: 264 DHFDCFASEAEFGDAFSKFAARVKPDGRLVTAADSPMALQAAENAQAQVETFGLSMGNAK 323

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              +Q R+ ++   +S  E+   GK    V     G H   N L  L +       +   
Sbjct: 324 YPHWQARQIQRLGAKSRFELFYCGKHRASVQLQIPGRHNILNALAALALTEQTGCPLPHR 383

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           I+AL+ F    G  +R+          LID+ Y  +P    A I  L         RRIA
Sbjct: 384 IQALASFQ---GIRRRFEWKGLWRGIHLIDD-YAHHPT---AVIETLRTARQIFGSRRIA 436

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +  +  ++  L Q+   + A+ L+L     V+++   V A ++      H         L
Sbjct: 437 LAFEPHQVSRL-QALLPEFAQSLAL--ADQVFIA--PVFAAREGNSALKHT--------L 483

Query: 434 FLFIQSSLVD 443
              +   +  
Sbjct: 484 IQDLAQRVRS 493


>gi|328553585|gb|AEB24077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens TA208]
 gi|328911621|gb|AEB63217.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 451

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 114/346 (32%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +        G+      V   +A      ++ + 
Sbjct: 111 TNAKFIGITGSNGKTTTTTLVYEMLKADSIKALIAGNIGT---VASEVAYHADGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RP I +I  +  AHL      E    AK +++    ++ T  +
Sbjct: 168 ELSSFQLMG----THAFRPEIGLILNVFDAHLDYHHSRENYEKAKQKVYLHQLESDTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  D     L     A  +    S   S  A F         +++ + V           
Sbjct: 224 NQSDETVVRLAEGGKAGTVPFSVSQELSSGA-FIKDGMLMFGDEAILPVD--------DI 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +       A      K L+ F   + R +      N+ F+   ++S
Sbjct: 275 VLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYVTAIQNRKFY---NDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S             + +L    + G         +       N+  V 
Sbjct: 332 KATNILATSKALSAFKA--------PVILLAGGLDRGNGFDDLKPYM------DNVKAVL 377

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     ++         HV   + ++       +   +GDV+++
Sbjct: 378 TFGQTAPKIEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|158834096|gb|ABW81853.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 147 IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           I +   L+ M      F   E+    L  ++     +    +V + ++  HL     +  
Sbjct: 14  IEIQQILSNMLTHKATFAAMEVSSHAL--VQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIKTIYSFGKSKNADFQLRK 262
              AK  +F   E      +N DD   +    +   + A+        G  + A    +K
Sbjct: 72  YEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPNAVAVSTSHQIPSGL-QGAWLSAQK 129

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +     +++         E+    +G     N+L+TL  +  L   +D  +KA S    
Sbjct: 130 IQYHENGAFIFFNSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQA 189

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR + ++     G  T+I + Y   P ++K     L+    H +G+   + G   +  
Sbjct: 190 IPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRMHCQGKLWCLFGCGGDRD 242

Query: 383 ELSQSFHIDLAEVLS 397
           +  +     +AE L+
Sbjct: 243 KGKRPLMGKIAETLA 257


>gi|331083028|ref|ZP_08332147.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399765|gb|EGG79426.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 457

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 109/328 (33%), Gaps = 34/328 (10%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K YA       +IG P T A +   +  + + E+    L  I        P +
Sbjct: 128 ALLGEIMKAYADSVFVVGNIGNPYTDAALSMTEDSYTVAEISSFQLETIDTFA----PKV 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I   HL+    +EE    K  I     K     LNY+D        +  A   KT
Sbjct: 184 SAILNITEDHLNRHHTMEEYIRVKELITANQTKEDYCILNYEDEVLRAFGERCPA---KT 240

Query: 247 IYSFGK---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++   +    K A          ++   +E+   G+        +G H  +N++    + 
Sbjct: 241 VFFSSERKLGKGAFLDGDAICLKTDTETLEIVKTGE-----LKILGKHNYENVMAASAMA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 V+   KA++ F        R             ++S   NP +    I  ++  
Sbjct: 296 YYTGVPVEVIHKAITEFRAVA---HRIEFVDEINGIAYYNDSKGTNPDAAIKGIQAMN-- 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R   ++G     G   +S + +  +      + ++ L G     +++   +   
Sbjct: 351 ------RPTLLIGG----GYDKESSYEEWIQSFDG-KVKYLVLIGQTREKIQEVAHKCGF 399

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVV 449
           V+   ++ ++            GD V++
Sbjct: 400 VNTILADNLEEAVSICTQKAEKGDAVLL 427


>gi|291457563|ref|ZP_06596953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
 gi|291380616|gb|EFE88134.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
          Length = 481

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 132/401 (32%), Gaps = 43/401 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +       IPV    +V  A    A  AR    A  I ITG+ GKT+T EM +  L
Sbjct: 66  RTPFILEAQRRGIPVMS--EVEFAWCLRADNARTGKPAPWIGITGTNGKTSTTEMTSEML 123

Query: 131 SSIKKTYACIGSYNN-HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G+  +  + + L+        D    EL    L      T  +    A I
Sbjct: 124 TACGLDAPTAGNIASGDMSMSLSRCATNPKHDVLCVELSSFQL----HFTDSLELDCAAI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T IA  HL    G E  A+ K+++F    +   I  N  D+    L   +          
Sbjct: 180 TNIADDHLDWHGGRENYAADKSKVFRAARR--VIAYNAQDAKVSELAQAAPVAAGCRKVG 237

Query: 250 FGKSKN-------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-----HMAQNML 297
           F  ++        AD  +      +     E        +  H          H+  + L
Sbjct: 238 FTLNEPEAGQIGIADGWIVDRSGVAGGKVGEPIKLAAIADFTHLMEPDGSLYPHLVADAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAA 356
             L +V  L AD +TA++AL  F P   R +      +N G    +D+S   N  +  A+
Sbjct: 298 TALVLVLGLGADRETALEALQTFKPGGHRIETVAEARVNGGVIRFVDDSKATNGHAANAS 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +S  S        + +  +      G   +    + A  +         + G     + +
Sbjct: 358 LSSFSA-------KSVVWIAGGLAKGSRFEDLVSNQAHTIKAA-----VIIGKDQQPMIE 405

Query: 417 AL---PRSIHVHYSE------TMDGLFLFIQSSLVDGDVVV 448
           A       I V   +       MD            GDVV+
Sbjct: 406 AFRSQAPDIPVTVIDPQDNDTVMDRAVAACGDYAAAGDVVL 446


>gi|90423695|ref|YP_532065.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB18]
 gi|118595684|sp|Q216E0|MURD_RHOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90105709|gb|ABD87746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB18]
          Length = 466

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 126/429 (29%), Gaps = 55/429 (12%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITG 115
           A    A LV+     +         +      +  +  + +  R R      A  +AITG
Sbjct: 62  AWSNIAALVLTPGVPLTHPAPHWAVLAAQAAGVEVIGDIELFCRERRLLAPDAPFVAITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   L          G+    I         P      + E+    +   
Sbjct: 122 TNGKSTTTALIAHLLRQAGFDTQMGGNIGTAILS----LEPPAAGRVHVVEMSSYQID-- 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  + P + ++  +   HL     IE  A+ K  +  G+   GT  +  DD F    
Sbjct: 176 --LTPSLDPSVGILLNVTEDHLDRHGSIEHYAAVKQRLVAGVPDGGTAIVGVDDDFSATA 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY----H 291
             +  AL  KT+      +     L         +   V    +       GIG     H
Sbjct: 234 AERV-ALDGKTVLRLSVKRP----LANGIVVENNAIYRVTDGEREAIARIDGIGSLRGLH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            AQN       V  L  D +   + L  F    G   R      QG    +++S   N  
Sbjct: 289 NAQNAAAAAAAVLALGVDREALQRGLRSF---PGLAHRMEQVGRQGETLFVNDSKATNAD 345

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +   A+S   +I     G+     G +  +                   I   +L G   
Sbjct: 346 AAAKALSSFEEIFWIAGGKPKT--GGIDSLAGFFP-------------KIRKAYLIGEAA 390

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV---KSS---------NSC 455
                 L   +     ET++             +    VV++    +S            
Sbjct: 391 QEFAATLDGKVDYEICETLEVAVPHAARDAAASELVDPVVLLSPACASFDQFRNFEIRGN 450

Query: 456 GFYRLINLL 464
            F  L+  L
Sbjct: 451 RFRELVTAL 459


>gi|329908805|ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546598|gb|EGF31569.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 461

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 127/375 (33%), Gaps = 41/375 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   LA    +  F + E  
Sbjct: 105 VLAVAGTHGKTTTASMLAWILEDAGYQPGFLIGGVPLNFGISARLAGEGGESAFFVIEAD 164

Query: 169 MSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V       V+  +   H   F  +  I +    +   + + G + +N
Sbjct: 165 EYDTAFFDKRSKFVHYRARTVVLNNLEYDHADIFPDLGAIETQFHHLVRTVPRIGRLLVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   L           I  FG    AD    +  + ++ S   V   G     VH 
Sbjct: 225 ---QREAALHTVIERGCWSEIEWFG--GAADAAGWQLDEHADGS-FTVIFHGAPQGTVHW 278

Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            + G H   N L  +     +   V  AI +L  F       +R           + D+ 
Sbjct: 279 MLNGEHNRMNALAAIAAARHVGVPVAQAIASLGAFQNVR---RRMELRGEVDAIRVFDD- 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++   ++ L Q+   G  R +AVL      M  +G +  +    LAE       
Sbjct: 335 FAHHPTAITTTVAGLRQV--VGTARILAVLEPRSNTMK-LGTMKSALPGSLAE------A 385

Query: 402 SHVWLSGFHVLA-------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             V+  G            L +AL P        + +  L   I ++   GD ++V  SN
Sbjct: 386 DLVFGYGAKGDGKNALGWNLAEALAPLGQKAQAFDDLSELVAAIVAAARPGDQILVM-SN 444

Query: 454 SCGFY----RLINLL 464
             GF     ++++ L
Sbjct: 445 G-GFGGVHQKILDAL 458


>gi|124009921|ref|ZP_01694587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
 gi|123984072|gb|EAY24445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
          Length = 502

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 128/383 (33%), Gaps = 48/383 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  AAR   KA +I ITGS GK+TT  +    L+         G+        +   
Sbjct: 103 ISEIEFAARYT-KAKMIGITGSNGKSTTTLLTHHLLTQAGFKVGLAGNIGESFAKQVV-- 159

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEI 213
                 DF + E+    L       +  RPH++++  I   H+    + I +  ++K ++
Sbjct: 160 --DDAYDFFVVEVSSFQLDN----CYEFRPHLSMLINITEDHMDRYENNINKYIASKFKV 213

Query: 214 FEGLEKTGTIFLNYDDSFF-ELLKAKSHAL---------GIKTIYSFGKS---KNADFQ- 259
            +          N DD+   E L+  +  +                +      KNAD + 
Sbjct: 214 IQKQTPEDYFLYNIDDANVTERLQKITEGIVGVSEGEEPAPNRTLPYCLPISLKNADPEK 273

Query: 260 -----LRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILT 307
                L  W + +    +    +G   +             G H   N ++ L    IL 
Sbjct: 274 AKEQSLSYWDEENGNIVLNFSDRGSDEQKTMTVPVADLPLPGKHNIFNAMIALQACHILG 333

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A      + L  F        R            I++S + N  S   A   L  I    
Sbjct: 334 ASPVVLHEGLKNFSNAP---HRMEEVAELSEVKFINDSKSTNIDS---AFYALDSIKMGE 387

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-Y 426
           + R++  +    + G   +     +A+ + +     +   G     L +    ++HV   
Sbjct: 388 DERKLVWIAGGVDKGNDYEKIRDLVAKKVKI-----LICLGLDNEKLHNTFRETVHVTIR 442

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           ++ ++            GD V++
Sbjct: 443 TQQINEAVEQAFDLARPGDTVLL 465


>gi|107021687|ref|YP_620014.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116688633|ref|YP_834256.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
 gi|105891876|gb|ABF75041.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116646722|gb|ABK07363.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
          Length = 461

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 125/370 (33%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   +  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRLRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E + A+        +  FG          +     ++ +      G+  EV   
Sbjct: 221 GRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+ +
Sbjct: 278 VQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVK---RRMEVRGSVDGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P ++   I+ L         R +AVL    E    +    +  +++  SL +   V+
Sbjct: 334 AHHPTAIDTTIAGLRARIGRQNARILAVL----EPRSNTMKLGVMKSQLPASLADADLVF 389

Query: 406 LSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P        + +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|160895297|ref|ZP_02076068.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
 gi|156862990|gb|EDO56421.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
          Length = 451

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 139/393 (35%), Gaps = 45/393 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+  TD++     + +    V++V  A     +++ +A     K  I AITG+ GKTTT 
Sbjct: 64  VLKQTDIMVISPGIPVDSAFVEEVKKAGIPVWSEIELAYYF-GKGKIAAITGTNGKTTTT 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLV 182
            ++   + +       +G+    IG+P T      D D   + E+    L  I       
Sbjct: 123 ALVGEIVKAWNPKTIVVGN----IGIPYTELCDTTDDDSATVAEISSFQLETI----VDF 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+++ +  + P HL+     E   + K  I +   +   + LNYDD     +       
Sbjct: 175 HPNVSAVLNLTPDHLNRHYTFENYGNVKKSITKNQTEEDVVVLNYDDEHTRAMAEGIR-- 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLM 298
               +  F + +             E   ++++  G+ ++V+       +G H  +N+L 
Sbjct: 233 --PRVVYFSRLEKP-----AGGVYVEDGHIKIEANGEKIDVLALKDLILLGAHNVENVLA 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +GI   +   V+        F   E    R             ++S   NP +    I 
Sbjct: 286 AVGISYYMGVPVNIIRDVAVSFKAVE---HRIEYVKTVAGVDYYNDSKGTNPDAAIKGIQ 342

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +  + P        ++G   + G     +            +  + L G     + +  
Sbjct: 343 AM--VKPTY------LIGGGYDKGSTYDEW-----IDAFDGKVRCLVLIGQTAKKIAETA 389

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    ++ + + +     +   +  DG+ V++
Sbjct: 390 KKHGFHNIVFEDDLLEAVKYCHENAKDGEAVLL 422


>gi|34763168|ref|ZP_00144135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887166|gb|EAA24270.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 305

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 20/207 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+      A  G+    +     +     D+DF   E
Sbjct: 112 KTKIIAITGTNGKSTTTAKISDMLNHAGYRAAYAGNIGRSLSE---VLLKEKDLDFISLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P+I++I  + P H+  ++  +E    K  I +   +      N
Sbjct: 169 LSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKFNITKNQTEDLYFIEN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     ++ ++  +  K I S  K K AD  ++  K C  E S ++V           
Sbjct: 225 IDDV---EIEKRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENSIIDVD--------KL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDT 312
              G H  +N L  +    I T D + 
Sbjct: 273 SLKGIHNLENTLFMVATAEIFTIDREK 299


>gi|291530453|emb|CBK96038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum 70/3]
          Length = 438

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 124/376 (32%), Gaps = 42/376 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            + + D++     + +     D++   +              II ITG+ GK+TT  ++ 
Sbjct: 67  CLDDCDVIMKAPGVILKNIVSDEIKAKITSQTDLFLRFCDNMIIGITGTKGKSTTSSLIK 126

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +    K    IG+       PL            + E+    L  ++       P +A
Sbjct: 127 FFIEKSGKDTMLIGNIGVP---PLERREEFTKDCVIVCEMSCHQLEYVK-----ASPDVA 178

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  I P HL +++      +AK  IF    +  T+ +       E +K  +       +
Sbjct: 179 VLLNIYPEHLDHYTDFAAYRNAKLNIFRYQNENDTLII------GEEVKQYADTKA--RV 230

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + G      F        +   ++ +       ++      G H   N+ + +   +  
Sbjct: 231 ITAG------FSCGDIGTRNGGIFIGDEFYPADVIDTKLK--GEHNLYNIAIAIYAATKA 282

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V   + AL  F    G   R            I++S +  P +  AA+         
Sbjct: 283 GCTVKQCLDALPQF---NGLEHRLEYVCMLNGAEYINDSISTAPQTAIAALKAYPDTD-- 337

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRS-IHV 424
                  ++G M          + +L++ LS   ++ ++ +       + + +    + +
Sbjct: 338 -----TLIIGGMDRGIP-----YDELSDWLSGDTSVRNLIILPDSGKRVAEKVTNPLVKL 387

Query: 425 HYSETMDGLFLFIQSS 440
            Y++ M+    + +  
Sbjct: 388 IYADDMEQAVKYAKQV 403


>gi|154485087|ref|ZP_02027535.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
 gi|149734040|gb|EDM50159.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
          Length = 454

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 122/374 (32%), Gaps = 44/374 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V +    +      A +  K  + AITG+ GKTTT  ++   +++       +G+  
Sbjct: 86  VLRVKEAGVPIWGEIELAYVIGKGKLAAITGTNGKTTTTALVGEIMANYYDKVDVVGNIG 145

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N      T A    D    + E+    L  I    H  +P ++ +  I P HL+    +E
Sbjct: 146 NPYT---TTAFDSTDDTVTVAEISSFQLETI----HTFKPDVSAVLNITPDHLNRHYTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQL 260
                K  I +  +    I LNY+D        K        I  F      +     + 
Sbjct: 199 CYTDVKMSIAKNQDSNQPIVLNYEDPILREYAGKL----TNRIIWFSSKQKVNPGVYLEG 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +       +          +       +G H  +N++  + I   +   VD   + +  F
Sbjct: 255 KNIIYADGKKETF-----VTTTEDTTLVGIHNVENIMAAIAISINMDVPVDIIRETIRKF 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                   R             ++S   N  +   AI  +S+         I + G   +
Sbjct: 310 KAVP---HRIEYVETINDVIYYNDSKGTNTDASIKAIEAMSR-------PTILIAGGYDK 359

Query: 381 ---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFL 435
                + +++F   +           + L G     + D + +    ++ ++E++     
Sbjct: 360 KVSFDDWAEAFGDKV---------KCLVLLGQTAEQIADTVKKHGFTNIIFTESLKEAVD 410

Query: 436 FIQSSLVDGDVVVV 449
               +   GD V++
Sbjct: 411 ECAKNAKPGDAVLL 424


>gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli Kim 5]
          Length = 81

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
          M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+P EAFFAIKG   DGHD+   A
Sbjct: 1  MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMA 59

Query: 61 VQKGAGLVVVNTDMVASIGSL 81
          +  GA L+VV+   + ++G L
Sbjct: 60 MANGASLLVVSEARLPAMGRL 80


>gi|42525886|ref|NP_970984.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           denticola ATCC 35405]
 gi|41815936|gb|AAS10865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 103/277 (37%), Gaps = 22/277 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           SKA I+A+TGS GK++T   L   L  +       G+       PL+           + 
Sbjct: 111 SKAPILAVTGSKGKSSTVSALYYGLKKLGYNAFLGGNITVS---PLSFFEETSCDTPVVL 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L +++    L    IA+IT I P HL+ +  +E+  + K  I+E +++   +  
Sbjct: 168 ELSSWQLADLKNKKLLKP-KIAIITPIMPDHLNWYGTMEKYVADKKIIYENMDEADYLIC 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N+DD + ++   ++ A     ++ + + K A  ++   + +  E        +   +   
Sbjct: 227 NFDDGWGKIFAEETRA----NVFWYSEKKPAKKYRGVFFNKNQEGLCNLSDGERLLLSKD 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADV------------DTAIKALSVFHPKEGRGKRYRC 332
               G  + QN+L   G+  +L   +            + +           G   R   
Sbjct: 283 AKVPGLKLKQNVLNA-GLALLLYQKIHKPENLKDNNIKEQSEFIRKFMDEYSGIEHRLEF 341

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              +      +++    P +  AA+    +      G
Sbjct: 342 FYEKNGIKFYNDTAATIPEASAAALEAFDKPPVLICG 378


>gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
 gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
          Length = 543

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 139/434 (32%), Gaps = 50/434 (11%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++A    +  H I        + I+ D+R +         KG  +   +++    +
Sbjct: 42  LREIIRADRWTLDAHDIEGA-DTAFSAITYDTRDVREGTL-LCCKG-RFKA-EYLHDIDE 97

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +G    V +TD  A  G+   P   V+D   A++ L+     R + + T++ ITG+ GKT
Sbjct: 98  RGLAAYVADTDFSAETGA---PGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGTKGKT 154

Query: 121 TTKEMLTIALSS----------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           TT       L++                   TY               + R   D     
Sbjct: 155 TTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKY 214

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
             + +S         + +   +A    I+P H+S       E+    K +I      +  
Sbjct: 215 LVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRN---SHA 271

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK--------SKNADFQLRKWKQCSEQSWMEV 274
           + L       +LL+  +   G+  + +F          S  AD         +E S   +
Sbjct: 272 LVLGAASDHADLLRQDAADAGV-PVTTFELLDGQSPAGSDAADVTAS--PANAEHSAYRI 328

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              G  + E      G     N    L I      D+     A     P    G+  +  
Sbjct: 329 AADGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFH 388

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q     I + Y  N AS+ A +  + +       R   V G     G  +     ++ 
Sbjct: 389 DPQSNTLAIVD-YAHNYASVTALLDFVDERFGSQHPRITLVTGS---AGNKAYDRRKEIV 444

Query: 394 EVLSLYNISHVWLS 407
           E       S ++ +
Sbjct: 445 EAAQHRIDSFIFTA 458


>gi|251793118|ref|YP_003007844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247534511|gb|ACS97757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
          Length = 457

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 139/382 (36%), Gaps = 36/382 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +   L     ++A++G+ GKTTT  MLT  L          IG    + G+   L + P
Sbjct: 97  WLHDHLLRDRWVLAVSGTHGKTTTTGMLTWILEQNGLEPGFLIGGIAGNFGISARLGKSP 156

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               + + E            +  V   P   +I  I   H   F  ++ I      +  
Sbjct: 157 ----YFVIEADEYDTAFFDKRSKFVHYNPRTLIINNIGFDHADIFEDLKAIQRQFHHMIR 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G I    D+   E   A  +    + +      K+ ++   +     + +   V 
Sbjct: 213 TIPNNGRILSFADEQSVEQTLAMGYWSECQYV-----GKDQEWYAERITH--DCTEFSVF 265

Query: 276 LQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G+ +  VH + +G H  +N LM +         +  A +AL  F   +   +R     
Sbjct: 266 HKGEKVAEVHWNIVGEHNMRNGLMAIAAAHHAGVSIQKACEALGSFINAK---RRLEVKG 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID- 391
           N    T+ D+ +  +P  ++A ++ L         R +AVL    E    +     H D 
Sbjct: 323 NLHDITVYDD-FAHHPTEIRATLTALRD-KVGANARILAVL----EPRSNTMKMGVHKDE 376

Query: 392 LAEVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +A  L   ++  ++      + V  + DAL +     +S+ +  L   I +     D ++
Sbjct: 377 IAPALEKADVVFLFQPETIPWKVADIADALTQ--PAAHSDDLAALVNMIATEAKPTDHIL 434

Query: 449 VK--SS-NSCGFYRLINLLLEE 467
           V    S       ++++ L ++
Sbjct: 435 VMSNGSFGGIHQ-KILDALQKK 455


>gi|307265431|ref|ZP_07546987.1| domain of unknown function DUF1727 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919545|gb|EFN49763.1| domain of unknown function DUF1727 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 451

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 128/366 (34%), Gaps = 84/366 (22%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLT-----LARMPVDVDF 162
           + ITG+ GKTTT  ++   L++  K+        +    I   L      L  +  D   
Sbjct: 51  VLITGTNGKTTTSGLIASILTTAGKSVVHNKEGANMKTGIATALIKSSNFLGNLQKDAT- 109

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +FE+       +  +   V+P+I VIT      L  +  ++       +    L +   
Sbjct: 110 -VFEV---DEANMPIVIEDVKPNIVVITNFFRDQLDRYGELDTTVEKVKKALLNLPQDSI 165

Query: 223 IFLNYDDSF----FELLKAK--------------------------SHALGIKTIYSFG- 251
           + LN D+ F     + +K+K                          +H    K IY +G 
Sbjct: 166 VLLNADEPFTASIGDEIKSKVFYYGIEDNIEGINSSSFEQKYCPICAHKYEYKKIY-YGQ 224

Query: 252 -----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                      K  N  F+        +     +  + K   V    IG +   N+L  +
Sbjct: 225 LGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLYNVYNLLAAI 284

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L  D  T +KA+  + P EGR ++ +    +    LI      NP   ++ +++L
Sbjct: 285 SAGILLNIDFSTILKAIESYWPIEGRLQKTKIKSKRTIINLIK-----NPIGFESTLNML 339

Query: 361 SQISP-----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           SQ +            + +GR ++ L D            ++L   LS   ++++  SG 
Sbjct: 340 SQFNKPLNLLISINDNYADGRDVSWLWD------------VNLESFLSKTKVNYIVTSGL 387

Query: 410 HVLALK 415
               + 
Sbjct: 388 RAEDMA 393


>gi|113955473|ref|YP_731457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9311]
 gi|113882824|gb|ABI47782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9311]
          Length = 466

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 117/351 (33%), Gaps = 36/351 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA +   K   I ITG+ GKTT   +L   L+         G+  +          
Sbjct: 98  GEMAVAWQALCKCPWIGITGTNGKTTVTHLLHHVLNQAGLYAPMAGNVGDSAAELGLQCM 157

Query: 156 MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            P     D+ + E+    +         VRP I + TT+ P HL     ++     K  +
Sbjct: 158 DPAQTKPDWIVMEMSSYQI----ESAIEVRPTIGIWTTLTPDHLERHGSMDAYRDIKKGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L+++    LN DD+    L+++          S  ++K    +    +         
Sbjct: 214 ---LQRSEHAVLNADDA---DLQSRHADWPDAQWISSAQNK---CEPSNLELWINPEGFV 264

Query: 274 VQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              +G          +G H  QNML+          +     + L  F        R   
Sbjct: 265 CSKKGALFPANALAMLGEHNRQNMLLVTAAALQTGLEAQAIERGLRSFPGVP---HRLES 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELS---QSF 388
             +     + ++S   N  +   A+  +           IA+L G + + G+ S   Q  
Sbjct: 322 LGSLHGMNVFNDSKATNYDAAAVALQAVPS--------PIALLAGGLSKQGDASGWLQLL 373

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           H  +   ++L+      L G     ++++        +    D +   I+ 
Sbjct: 374 HDKVC-SIALFGSDRDILLGL----IRNSGYTGDVTSHPTMADAVAAAIEQ 419


>gi|158834056|gb|ABW81833.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834058|gb|ABW81834.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834060|gb|ABW81835.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834062|gb|ABW81836.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834064|gb|ABW81837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834072|gb|ABW81841.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834088|gb|ABW81849.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834090|gb|ABW81850.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834092|gb|ABW81851.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834098|gb|ABW81854.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834100|gb|ABW81855.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 21/272 (7%)

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           LSS + T A        I V   L+ M      F   E+    L  ++     +    +V
Sbjct: 3   LSSNQNTTASA------IEVQQILSNMLTHKATFAAMEVSSHAL--VQHRVAALPFAASV 54

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIK 245
            + ++  HL     +     AK  +F   E      +N DD   +    +   + A+   
Sbjct: 55  FSNLSRDHLDYHGDMANYEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPNAVAVSTS 113

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G  + A    +K +     + +         E+    +G     N+L+TL  +  
Sbjct: 114 HQIPSGL-QGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLA 172

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D  +KA S   P  GR + ++     G  T+I + Y   P ++K     L+    
Sbjct: 173 LKYPLDALLKAASKLQPIPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRM 225

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           H +G+   + G   +  +  +     +AE L+
Sbjct: 226 HCQGKLWCLFGCGGDRDKGKRPLMGKIAETLA 257


>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 147

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 10/141 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
               +L   +            + G+ +DSR I     F     I G   D H F+  AV
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGK 119
           + GA  ++V  D+        IP   V D   A+            +K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDVNIE-----IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACI 140
           TTT  +L   LS        +
Sbjct: 116 TTTSYLLEKILSDYGYHTGLM 136


>gi|93007167|ref|YP_581604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           cryohalolentis K5]
 gi|118595677|sp|Q1Q883|MURD_PSYCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|92394845|gb|ABE76120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter
           cryohalolentis K5]
          Length = 471

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 113/339 (33%), Gaps = 30/339 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+AITGS  K+T   ++    +         G+    IGVP        +++  + E
Sbjct: 114 TVPIVAITGSNAKSTVTTLVGQMAADAGINVGVGGN----IGVPALSLLSNKEMELAVIE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +  L       +A +  ++P HL     +     AK  IF+G +    + +N
Sbjct: 170 LSSFQLETVTNLGA----QVATVLNMSPDHLDRHGDMLGYHQAKHRIFQGAKS---VVIN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D+    L + S         S G               + Q+++    +         
Sbjct: 223 REDALTRPLVSDSLPR-----LSTGIHAPNKGHYGLITDTAGQTYLARGTERLISADKLK 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N    L +  +    ++  +          G   R +           ++S 
Sbjct: 278 IKGRHNLLNAQAALALGELAGLPLEIMLIT---LQQFAGLEHRCQYVSTVAGIDYFNDSK 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S  AA+  L  +    +G+ + +L      G+       +L+  ++ Y +S V  
Sbjct: 335 GTNIGSTMAAVEGLGAVYAPKDGKLLLIL-----GGQGKGQQFGELSPFINQY-VSQVLF 388

Query: 407 SGFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSS 440
            G     +        L   + +H  +T++  F  I+  
Sbjct: 389 IGEDGKQIEQHLRAAGLSDEVSLHQCQTLENAFATIEQV 427


>gi|295092964|emb|CBK82055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprococcus sp.
           ART55/1]
          Length = 453

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 111/365 (30%), Gaps = 28/365 (7%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V +    +      A    K  I AITG+ GKTTT  ++   + +       +G+    
Sbjct: 86  VVRNAGIPIWSEIELAYHYGKGKIAAITGTNGKTTTTALVGEIVKAHNAKTIVVGNIGIP 145

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
                 L     D    + E+    L           P+++ I  + P HL+     E  
Sbjct: 146 YTE---LCDTTDDDSDTVAEISSFQL----ETVIDFHPNVSAILNLTPDHLNRHYTFENY 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            + K  I +         LNYDD     +  K+        +S  +       +      
Sbjct: 199 GNVKFSITKNQTMDDVTVLNYDDEHTRAMGEKAKDHCHVVYFSRLEKPAGGVYVEDGDII 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E    ++ +           +G H  +N+L  +GI   +   VD      + F      
Sbjct: 259 LEDGDKKINVLAIK---DLKLMGAHNVENVLAAVGISYYMGVPVDVIRDVATSFKAVA-- 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R             ++S   NP +    I  +   +    G            G    
Sbjct: 314 -HRIEYVDTVDGVAYYNDSKGTNPDAAIKGIQAMVAPTFLIGG------------GYDKG 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDG 444
           S + +  E      +  + L G     + D   R     + + E +     +   + VDG
Sbjct: 361 SEYDEWIEAFDG-KVKWLVLIGQTAQKIADCAKRHGFNSIIFEENLQDAVAYCHENAVDG 419

Query: 445 DVVVV 449
           D V++
Sbjct: 420 DAVLL 424


>gi|320450519|ref|YP_004202615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
 gi|320150688|gb|ADW22066.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
          Length = 417

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 110/373 (29%), Gaps = 69/373 (18%)

Query: 84  PVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P        GAL   +  +A RL   A II ITG+ GKT+T       L          G
Sbjct: 69  PHLEALKARGALILGEAELAYRLSP-APIIGITGTAGKTSTTLFTAHLLRGQGLKALEGG 127

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + +        L  +  + +  + EL    L  I    H+ RP +AV+  +   HL    
Sbjct: 128 NVDPP------LVSVVDEAEVAVAELSSFQLERI----HVFRPRVAVLLNLGVDHLDRHG 177

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E    AK  + + L     +  N  D         S A     +Y F    +   +  
Sbjct: 178 SVEAYHQAKLNLLKNLTPEDALVYNEGDPKVRQAALASPA----RLYPFTPGNSP--RET 231

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +   E +   ++L G+ +                                        
Sbjct: 232 NLRAALEATRAYLELLGRPLNTDLL------------------------------QESLK 261

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                  R++    +G    ID+S      S+ AA+                +LG     
Sbjct: 262 TLPSPPHRFQIFARKGEVVFIDDSIATRTPSVAAALEAAPAPIAW-------ILG----- 309

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD------GLFL 435
           GE   +    L  +LS   +  V   G     + +AL   + V      D          
Sbjct: 310 GEDKGADLEALRPLLSRVRV--VLAIGRDGPKMAEALGGGVEVVVLPQTDGRAALRQAVA 367

Query: 436 FIQSSLVDGDVVV 448
                L  G V++
Sbjct: 368 EALKRLERGSVLL 380


>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 453

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 121/350 (34%), Gaps = 37/350 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            +    ++ +TG+ GKTTT  ++   L         +G+  + +G      R     D  
Sbjct: 103 PKLDGKVVVVTGTNGKTTTTSLIAHLLEVSGLDALALGNIGSPLGDFAGERR-----DVF 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T      I+VIT IAP H+      E   SAK +       TG  
Sbjct: 158 VIELSSFQL----HWTEKSEFDISVITNIAPDHIDWHGSYENYISAKKKAISHRRDTGWS 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSM 281
            +          K +S   G     + G +   D +       +E++   ++       M
Sbjct: 214 IV--------QEKDRSLLGGQSDPRTIGLTLENDLKKDGIFINNERAIAVIEGVRHDLFM 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  +N  M      +          ++ +   +     R +  + +   + 
Sbjct: 266 SKQVPLLGGHNIENAAMAATACILS--SSRKIDWSMGLASYQAPP-HRCQFIVEKDGISY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+S   N AS   A+  +        G ++ +LG     G+     + +LA +    N 
Sbjct: 323 VDDSKGTNVASTCTALRSI-------PGGKVVILG-----GKGKGENYRELA-LAVKDNC 369

Query: 402 SHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
            +  L G    A+ DAL       +   E+M+   +        GD V++
Sbjct: 370 RYAILLGEERFAIADALKEQNVTDWQMVESMEEAVVKASRRAKRGDTVLL 419


>gi|326390357|ref|ZP_08211916.1| domain of unknown function DUF1727 protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993634|gb|EGD52067.1| domain of unknown function DUF1727 protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 451

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 128/366 (34%), Gaps = 84/366 (22%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLT-----LARMPVDVDF 162
           + ITG+ GKTTT  ++   L++  K+        +    I   L      L  +  D   
Sbjct: 51  VIITGTNGKTTTSGLIASILTTAGKSVVHNKEGANMKTGIATALIKSSNFLGNLQKDAT- 109

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +FE+       +  +   V+P+I VIT      L  +  ++       +    L +   
Sbjct: 110 -VFEV---DEANMPIVIEDVKPNIVVITNFFRDQLDRYGELDTTVEKVKKALLNLPQDSI 165

Query: 223 IFLNYDDSF----FELLKAK--------------------------SHALGIKTIYSFG- 251
           + LN D+ F     + +K+K                          +H    K IY +G 
Sbjct: 166 VLLNADEPFTASIGDEIKSKVFYYGVEDNIEGINSSSFEQKYCPICAHKYEYKKIY-YGQ 224

Query: 252 -----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                      K  N  F+        +     +  + K   V    IG +   N+L  +
Sbjct: 225 LGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLYNVYNLLAAI 284

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L  D  T +KA+  + P EGR ++ +    +    LI      NP   ++ +++L
Sbjct: 285 SAGILLNIDFSTILKAIESYWPIEGRLQKTKIKSKRTIINLIK-----NPIGFESTLNML 339

Query: 361 SQISP-----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           SQ +            + +GR ++ L D            ++L   LS   ++++  SG 
Sbjct: 340 SQFNKPLNLLISINDNYADGRDVSWLWD------------VNLESFLSKTKVNYIVTSGL 387

Query: 410 HVLALK 415
               + 
Sbjct: 388 RAEDMA 393


>gi|85374297|ref|YP_458359.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
 gi|84787380|gb|ABC63562.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
          Length = 476

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 140/401 (34%), Gaps = 36/401 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V     L +P     D+  AL   A           +AI G+ GK+T   M
Sbjct: 85  AAVEDSVPEVVRAKELGLPRLTRADLNAALFNSAETG--------VAIAGTSGKSTVTGM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L    +    I +    +   ++  R       G  +L +S + E      L +P 
Sbjct: 137 LGWILHHAGREP-TIMN-GAVMKNFVSEGRPFASAVIGGVDLYVSEVDESDGSIALYQPK 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++  ++  H      +EE+ +      + +E +    +N DD     L+ ++      
Sbjct: 195 VGLLLNVSLDH----KSMEELRTLFG---DYVEASDIAVINADDDEAIQLEGRADDAITF 247

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            IY  G S       R      + + +  +       +V H  G H   N L  +   S 
Sbjct: 248 AIYDKGASIGVVDGSRADGPVRQAATVIDRRDDSEHALVLHMPGRHNLSNALAAIAGASA 307

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A+ AL+ F   +G  +R+           + + +  NP   +A +  L     
Sbjct: 308 AGVQVADAVAALAEF---KGLARRFDIIGTSASGITVIDDFGHNPEKCRATLRTLKA--- 361

Query: 366 HGEGRRIAVL-----GDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLAL 414
              GR +A       G + +MG EL+++F  +L           V+  G          +
Sbjct: 362 -HPGRVLAFFQPHGYGPLRQMGAELAETFAYELDADDITLLCDPVYFGGTVDRSQGSERI 420

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            D + +      +  T +G   ++ ++   GD +VV  +  
Sbjct: 421 VDLIAQAGGQAIHINTREGCGDWLVANAQPGDRIVVMGARD 461


>gi|269127138|ref|YP_003300508.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
 gi|268312096|gb|ACY98470.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
          Length = 469

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 119/405 (29%), Gaps = 47/405 (11%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            A+ +G  LVVV+          +       ++ G +      +R      A  +A+TG+
Sbjct: 62  DALPEGTDLVVVSPGWRPDAPLPAAAAAAGVEIYGEVELAWRLSREDGGRAAPWLALTGT 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L +       +G+       P+  A +    D    EL    L    
Sbjct: 122 NGKTTTVRMLACILRAAGHRAPAVGNVG----TPIVEAALDPSCDVLAVELSSYQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             +  + P    +  +AP HL     +E  A+ K +I+           N DD     L 
Sbjct: 174 HWSSSLAPEAGAVLNVAPDHLDWHGSLEAYAADKGKIYA---PGTVAVFNADDEISTRLA 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHM 292
           A     G +    F     A  QL   +            + ++ E            H 
Sbjct: 231 A-----GAERAVGFTLGIPAPGQLGVVEDLLVDRAFTGDPRREAAELAQLSDVRPFAPHN 285

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    +            + L  F P      R            ID+S   NP +
Sbjct: 286 VANALAAAALARAHGVPPQAVAEGLRAFVPDP---HRIAHVATVNGVDYIDDSKATNPHA 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             A+++          G            G          A  L         L G    
Sbjct: 343 AAASLAACESAVWIAGGLLK---------GADVTELVRSCAPRLRAA-----VLIGADRA 388

Query: 413 ALKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + +AL R         I   ++ TMD +          GD V++
Sbjct: 389 KIAEALARHAPEVPVVDIPDTHTGTMDIVVAEAARLARPGDTVLL 433


>gi|296113749|ref|YP_003627687.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
 gi|295921443|gb|ADG61794.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
          Length = 469

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 131/373 (35%), Gaps = 42/373 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +  IPV  V DV   ++ L      + +   +IAITGS  K+T   ++         
Sbjct: 80  AAKAQGIPV--VSDVQLFIDTLKARDLAQATNTPVIAITGSNAKSTVTTLVGEMAKRAGM 137

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+        LT+  M    D  + EL    L  I  L        A I  ++  
Sbjct: 138 IVGVGGNIGTPALELLTIQNM----DLVVLELSSFQLEHISNLAA----QGATILNLSAD 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYSF 250
           HL    G+ +  + K  IFE  +   T  +  DD+         L+  +    I T  S 
Sbjct: 190 HLDRHDGMADYLAQKLRIFEHCQ---TAIICQDDAGLAKQCLTTLQRIAPNHTIITTNSL 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTA 308
              + ADF L       +   M +  Q   +  +H     G H   N L  L + +    
Sbjct: 247 LSHQTADFYLFD-----DGDGMALYHQKDKLLPIHQLKIKGKHNLLNALSALALGTAANL 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F   +G   R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 302 PMDAMLDTLKTF---KGLPHRCEYIDDIDGKAYFNDSKGTNIGSTMAAIDGLGTV--YGT 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----H 423
                +LG + +  + S     +L+  ++ +    V+L G     ++  L +        
Sbjct: 357 SSLALILGGLGKGQDFS-----ELSAYVTQW-ADSVYLIGQDAPMIEQDLLKGDAHLVSK 410

Query: 424 VHYSETMDGLFLF 436
           ++   T+D   L 
Sbjct: 411 IYQVGTLDQAVLA 423


>gi|213420152|ref|ZP_03353218.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 336

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 20/311 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      + G+  +      ++        +   +     ++A+ G+ GKTTT  M T 
Sbjct: 10  LVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATW 69

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L +        IG    +  V   L   P    F + E            +  V   P 
Sbjct: 70  ILEACGYKPGFVIGGVPGNFEVSARLGESP----FFVIEADEYDCAFFDKRSKFVHYCPR 125

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I      +   +   G I    +D   +   A       +
Sbjct: 126 TLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQE 185

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            +      +   +Q +  K  ++ S  EV L G+ + +V    +G H   N LM +    
Sbjct: 186 LV-----GEQGHWQAK--KLTTDTSEWEVWLDGEKVGDVKWGLVGEHNMHNGLMAIAAAR 238

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      A  AL  F       +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 239 HVGVAPAEAASALGSFINAR---RRLELRGEANGVTVYDD-FAHHPTAILATLAALRG-K 293

Query: 365 PHGEGRRIAVL 375
             G  R IAVL
Sbjct: 294 VGGTARIIAVL 304


>gi|89891769|ref|ZP_01203271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
 gi|89515924|gb|EAS18589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
          Length = 452

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 136/406 (33%), Gaps = 51/406 (12%)

Query: 53  GHDFILHAVQKGAGL----VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD I   +     +    +  N  +V  I   +IPV          +++  A+R   + 
Sbjct: 62  GHD-IEQILNADVVVKSPGIPDNATIVQKIIEANIPVI---------SEIEFASRFSDEV 111

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAITGS GKTT   ++   L          G+          +A  P +    + E+ 
Sbjct: 112 E-IAITGSNGKTTVTSLIGHILQIANYDVTIGGNIGQSYAAQ--VAESPAEYR--VLEVS 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
              L  I+      +P +AV+  I P HL  +    E   ++K  I    ++   +  N 
Sbjct: 167 SFQLDGIKTF----KPKVAVLLNITPDHLDRYDYKFENYVASKMRIAMNQDENDFLIYNA 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   +   A         +  F        Q  ++    +   + + L      +    
Sbjct: 223 DDPTIQE--AIIQFKPKSKLVPFSMQ-----QALEYGAFIKDQQININLDTNLFTMPIQK 275

Query: 288 I---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +   G H   N +       +L    +T  ++L+ F   E    R    L       I++
Sbjct: 276 LSIKGQHNTANAMAAATTAKLLQIRKETIRQSLASFQGVE---HRLEQVLKINKVQYIND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A+  + + +         ++G + +    S  F       L   N+  +
Sbjct: 333 SKATNVNATYYALDSMEKPTVW-------IVGGVDKGNNYSDLF------ALVNKNVKAI 379

Query: 405 WLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     + +A    + ++  + +M+            GD V++
Sbjct: 380 VCLGNDNSKIVEAFSGCVDNMVETSSMEDAVRVAYKLAGPGDNVLL 425


>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7803]
 gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 7803]
          Length = 463

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 121/400 (30%), Gaps = 56/400 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L    +++VA    S    I ITG+ GKTT   +L   L+         G+  +      
Sbjct: 94  LRVRGEMSVAWDALSGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGHSAAELA 153

Query: 152 --TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L       D+ + E+    +         V P I + TT+ P HL     +    + 
Sbjct: 154 LEVLQGTRPKPDWVVMEMSSYQI----EAAGEVSPRIGIWTTLTPDHLERHGTLAAYRAI 209

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------FQLRKW 263
           K  +   LE+  T  LN DD+            G++ +       + D         + W
Sbjct: 210 KRGL---LERAETPVLNADDADIRQHCGAWSRPGLRWVSGADDGPDKDSIHRISVNAQGW 266

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E+                   G H  QNML+        +    +   AL  F   
Sbjct: 267 VSQGERPLFPAD--------ALPLPGDHNRQNMLLATAAALEASVSASSIEAALRCFTGV 318

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R     + G   + ++S   N  +    +  +           + + G   + G+
Sbjct: 319 P---HRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQA-------PVVLLAGGQTKQGD 368

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLF--I 437
                       L    +  V L G     L D +  +      +H+++    +     +
Sbjct: 369 ADPWL------ELLQSQVCGVVLFGAGAGELADLIETAGFSGPVMHHADLNAAVPQALSL 422

Query: 438 QSSLVDGDVVV--VKSS---------NSCGFYRLINLLLE 466
                 G V++    +S             F RLIN + +
Sbjct: 423 AKDFEAGSVLLSPACASFDQYPNFEARGDHFRRLINAVKD 462


>gi|126172967|ref|YP_001049116.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
 gi|125996172|gb|ABN60247.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
          Length = 463

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 126/356 (35%), Gaps = 33/356 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L +      F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGK----TAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWP 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
            D    +           +   ++  +++A+    K     +    EV   G+S  ++  
Sbjct: 224 ADSHAVKQTIDMGCWSEQE---TYHLAESANGWYGK-ALSDDCHRFEVFFDGESQGILEW 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H  +N +M +     +      AI+AL+ F P +   +R          ++ D+ 
Sbjct: 280 DLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPK---RRLELLGTVNGVSVYDD- 335

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAEVLSLYNI 401
           +  +P ++    + L  +       +I V+     +   S +     H D     S+   
Sbjct: 336 FAHHPTAIA---TTLKGMRAKVGQSKITVV-----LEPRSNTMKSGVHKDTL-AFSMMQA 386

Query: 402 SHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              +L     +   +K+A+  + I V     +D +   + ++   GD +VV  SN 
Sbjct: 387 DEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVM-SNG 441


>gi|260589604|ref|ZP_05855517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
 gi|260540172|gb|EEX20741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
          Length = 457

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 109/328 (33%), Gaps = 34/328 (10%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L  I K YA       +IG P T A +   +  + + E+    L  I        P +
Sbjct: 128 ALLGEIMKAYADSVFVVGNIGNPYTDAALSMTEDSYTVAEISSFQLETIDTFA----PKV 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I   HL+    +EE    K  I     K     LNY+D        +  A   KT
Sbjct: 184 SAILNITEDHLNRHHTMEEYIRVKELITANQTKEDYCILNYEDEVLRAFGERCPA---KT 240

Query: 247 IYSFGK---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++   +    K A          ++   +E+   G+        +G H  +N++    + 
Sbjct: 241 VFFSSERKLEKGAFLDGDAICLKTDTETLEIVKTGE-----LKILGKHNYENVMAASAMA 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 V+   KA++ F        R             ++S   NP +    I  ++  
Sbjct: 296 YYTGVPVEVIHKAITEFRAVA---HRIEFVDEINGIAYYNDSKGTNPDAAIKGIQAMN-- 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R   ++G     G   +S + +  +      + ++ L G     +++   +   
Sbjct: 351 ------RPTLLIGG----GYDKESSYEEWIQSFDG-KVKYLVLIGQTREKIQEVAHKCGF 399

Query: 424 VHY--SETMDGLFLFIQSSLVDGDVVVV 449
           V+   ++ ++            GD V++
Sbjct: 400 VNTILADNLEEAVSMCTQKAEKGDAVLL 427


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 137/377 (36%), Gaps = 45/377 (11%)

Query: 83  IPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP+      LG   ++++ +A      A I+AITG+ GKTTT  +     +  ++     
Sbjct: 83  IPILEKAQSLGIPVISEIELAYHF-CSAPIMAITGTNGKTTTTTLTGEIFTVAQEEVKIR 141

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+    +   +T      D    + E+    L  IR      RP I++I  + P HL+  
Sbjct: 142 GNIGYPLIEDITSLT---DKGVVVAEISSFQLENIRDF----RPKISLILNLTPDHLNRH 194

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E+  +AK +IF    ++    LNYDD     L  ++       +  F +      +L
Sbjct: 195 GTFEDYIAAKKKIFINQTESDYTVLNYDDELTRGLADETGG----EVIYFSQQS----RL 246

Query: 261 RKWKQCSEQSWMEVQLQGKS--MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 +E   +          +++   GI G H  +N L  + I  +   DV       
Sbjct: 247 NHGIYAAEGKIINNLTADNEPLIQIDETGIKGPHNLENALGAVVIALLRGIDVKII---R 303

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
            V     G   R            I++S   NPA+   A+   S            + G 
Sbjct: 304 KVLQEFSGIEHRIEEVATIEGIKYINDSKATNPAAAIKALETFSA-------PITLIAGG 356

Query: 378 M---CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDG 432
           M    E+ + +              N+ ++ L G     +++++   R  ++   +++  
Sbjct: 357 MDKKAELTDFAFKIEE---------NVQNLILLGETAEKIEESVTEFRFSNIKQVDSISE 407

Query: 433 LFLFIQSSLVDGDVVVV 449
                +   V G +V++
Sbjct: 408 AVKEAEEVSVKGSIVLL 424


>gi|196230910|ref|ZP_03129771.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
 gi|196225251|gb|EDY19760.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
          Length = 445

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 134/380 (35%), Gaps = 59/380 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K  II ITG+ GKTTT +++   L++        G+       P   A++     
Sbjct: 106 AFEMCKCPIIGITGTNGKTTTTQLVEKMLNACGVKTVASGNIG-----PAFSAKVNESSH 160

Query: 162 FGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             +   E+    L  IR          +V    A  HL  +  ++E   AK  IFE   +
Sbjct: 161 LDVMTLEVSSFQLESIRRF----HCQTSVWLGFAADHLDRYRSMDEYYVAKIRIFENQTE 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +NY        + K  AL  K I       + DF LR+           +  +G+
Sbjct: 217 DDWAIVNY--------RDKLPALKAKKITFSAYVPDGDFSLREGV---------IHFRGE 259

Query: 280 SMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  +   +  G H A+N++ TLG+  +        +  L  + P   R +  R      
Sbjct: 260 RVLAMSETNLRGSHNAENLMATLGVGFVRGLSFAQMLPPLREYKPLPHRCEILRTV---N 316

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   NP S++ A+        H E R + ++      G   + F  DL   L 
Sbjct: 317 GAEWVNDSKGTNPDSVEKAL--------HSETRPVVLIA-----GGKDKGFEYDLLTDLV 363

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVV-------- 448
                 V + G     ++      + V  +  +++       ++   GDVV+        
Sbjct: 364 AARCRSVVVMGEMADRIEAIWKSRLPVANAGRSLEKAVELAHAAAQPGDVVLFSPGTSSF 423

Query: 449 --VK--SSNSCGFYRLINLL 464
              K  +     F  L+  L
Sbjct: 424 DMFKNYADRGNQFRALVQAL 443


>gi|329766782|ref|ZP_08258312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella haemolysans
           M341]
 gi|328839293|gb|EGF88875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella haemolysans
           M341]
          Length = 446

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 120/348 (34%), Gaps = 42/348 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +IAITG+ GKTTT +M    L + KK     G+    IG P             + 
Sbjct: 106 FNIDMIAITGTNGKTTTTQMTFDILKASKKDVFLAGN----IGYPSIEIAYNHPNSLLVT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T   +P IAVIT +   HL     +E    AK  +++  +K   + L
Sbjct: 162 EVSSFQLQG----TKYFKPSIAVITNLGVGHLDYHGSVENYRDAKRNVYKNQDKNDILIL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSW-MEVQLQGKSME 282
           N +    E  K     +  K +  +   +N  AD  +R      E     ++        
Sbjct: 218 NIN----EKDKFDIERINSK-VLFYDTKENIEADIYVRDNMVIFEGVELFDIT------- 265

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +    I  I  A  ++    L  F   +    R +           
Sbjct: 266 -KLSLPGMHNVENAINAAVISFIKGAGKESIQNVLYAFSGVK---HRLQFVGEHKGVKFY 321

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +   A+S         E   I V G      +       +L   L    + 
Sbjct: 322 NDSKATNPVATTRALSGF-------EKNIILVCGGQDRGIDF-----KELIPYLPR--VK 367

Query: 403 HVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + + G     L + A+  ++  H +  +D   +   S   +GD +++
Sbjct: 368 SMVVVGESKEILYNLAIDNNVDCHKAIKIDDATILANSLAENGDTILL 415


>gi|121606284|ref|YP_983613.1| UDP-N-acetylmuramate [Polaromonas naphthalenivorans CJ2]
 gi|120595253|gb|ABM38692.1| UDP-N-acetylmuramate [Polaromonas naphthalenivorans CJ2]
          Length = 475

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 120/370 (32%), Gaps = 38/370 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD 159
                    ++A+ G+ GKTTT  MLT  L          IG    + GV   L      
Sbjct: 112 THHATGPRHVLAVAGTHGKTTTTAMLTWILECAGLQPGFLIGGVPLNFGVSARLGTGNA- 170

Query: 160 VDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP  A++  +   H   F  +  I      +   +
Sbjct: 171 ---FVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLAAIERQFHHLVRTV 227

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G +  N ++   + + A       + +   G   +  F  +      E +  +V   
Sbjct: 228 PSQGRVVFNANEDSLQRVLA--QGCWSEQVPFGGAPGHGGFTAQ-----GEPNDFQVLKA 280

Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+++  +   I G H   N L  +     L    + A +AL+ F   + R +        
Sbjct: 281 GETVARLQWDISGMHNQLNALAAIAAAEHLGVAPEAAAEALASFQNVKRRMEVRGSVQRA 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAV---------LGDMCEMGEL 384
           G    + + +  +P ++   I  L +    +     R +A+         LG M      
Sbjct: 341 GGPITVYDDFAHHPTAIHTTIDGLRRQLDGAGKSAERILAIFEPRSNTMKLGTMTAQLPW 400

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S   H DLA              G    A     P +     ++ +D L   ++++   G
Sbjct: 401 SLE-HADLA---------FCHAGGLDWDARAALAPMAERAQVADDLDQLLAQVKAAARPG 450

Query: 445 DVVVVKSSNS 454
           D ++   SN 
Sbjct: 451 DHLLCM-SNG 459


>gi|71908878|ref|YP_286465.1| cyanophycin synthetase [Dechloromonas aromatica RCB]
 gi|71848499|gb|AAZ47995.1| Cyanophycin synthetase [Dechloromonas aromatica RCB]
          Length = 857

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 124/387 (32%), Gaps = 55/387 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-------- 155
             ++  ++AI G+ GKTTT  ++     S         +   +I                
Sbjct: 466 DNARIPVVAIAGTNGKTTTSRLIGRIFESNGLRVGMTSTDGIYIEGKRIDTGDCSGPRSA 525

Query: 156 ----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIAS 208
               M  DVD  +FE   +  G +R         +AV+T I    HL     + ++E+A 
Sbjct: 526 RNVLMHPDVDAAVFE--TARGGVLREGLGFDLCDVAVVTNIGLGDHLGLNYVTTVDELAV 583

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQL---- 260
            K  I E +   GT  LN  D     +           +  F + +N    A  +     
Sbjct: 584 VKRVIVENVSPHGTAVLNATDPIVASMAIHCPG----DVIFFARDRNHHVLATHRAQGKR 639

Query: 261 -----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                R      E    + ++   ++ +  +G      +N +        L  D     +
Sbjct: 640 VVYVERDAIIFGEGGRKKHRVPLANVPLTRNGSIGFQVENAMAAAATGWALGYDWPVIER 699

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+ F              +    TLI + Y  NP +++A +  +  +      R + + 
Sbjct: 700 ALANFVSDATTAPGRFNVFDFKGATLIAD-YGHNPDAIQALVKAVENMPAV--RRSVVIS 756

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVH 425
           G     G+          E+L       V L           G  +  L+D L  +    
Sbjct: 757 G----AGDRRDEDIRQQTEILGEA-FDDVILYQDACQRGRADGEVIGLLRDGLANASRTK 811

Query: 426 YSETMDG---LFLFIQSSLVDGDVVVV 449
             + + G         + L  GD+ ++
Sbjct: 812 QIDAITGEFVAIDTALNRLQPGDLCLI 838


>gi|89902125|ref|YP_524596.1| UDP-N-acetylmuramate [Rhodoferax ferrireducens T118]
 gi|89346862|gb|ABD71065.1| UDP-N-acetylmuramate [Rhodoferax ferrireducens T118]
          Length = 466

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 122/384 (31%), Gaps = 34/384 (8%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     +IA+ G+ GKTTT  M+   L          G     + V   ++    
Sbjct: 102 WLAEHILQGRHVIAVAGTHGKTTTTAMVAWILECAGLQ---PGFLVGGVPVNFGVSARLG 158

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + E            +  V  RP  AV+  +   H   F  +  I      +   
Sbjct: 159 AGRTFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLLRT 218

Query: 217 LEK-----TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +       +G + +N      E L    HA     + SFG        +  +    E   
Sbjct: 219 VPGAGPHGSGRVVVNG---LEESLARVIHAGCWSEVRSFGA------VVSDFTARGEPQE 269

Query: 272 MEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +V  Q + +  V     G H   N L  +     +    + A +AL  F   + R +  
Sbjct: 270 FDVLYQNQLVGHVKWALTGVHNQLNALAAIAAAQHVEVSPEAAARALGSFENVKRRMEIR 329

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      + + +  +P +++  +  L +     + R +AV     E    +     
Sbjct: 330 GSVQRADGSITVYDDFAHHPTAIRTTVDGLRR-KLGPKQRILAVF----EPRSNTMKLGT 384

Query: 391 DLAEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             A++   L+  +++     G    A +           ++T+D L   + +    GD +
Sbjct: 385 MKAQLPWSLADADLAFCHGGGLGWDAREALASMGAKAQVADTIDDLVAQVVAQARAGDHI 444

Query: 448 VVKSSN----SCGFYRLINLLLEE 467
           +   SN         +L+  L   
Sbjct: 445 LCM-SNGGFGGVHL-KLLQALENR 466


>gi|21244161|ref|NP_643743.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109793|gb|AAM38279.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 452

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMG---CWTPVERFGFEASLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              N    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGNARDITVYDD-FAHHPTAIA---TTLQGLRAKVGAARVVV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P            + +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGEARVVQDVDALLHTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 RPGDHVVFM-SNG 438


>gi|225630075|ref|YP_002726866.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
 gi|254766032|sp|C0R5N3|MURC_WOLWR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225592056|gb|ACN95075.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
          Length = 474

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 148/435 (34%), Gaps = 55/435 (12%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +I H     +   +V         ++ + V   ++    L++  + A L     +IA++G
Sbjct: 75  YIGHNANNISQAQIVVHSSAIESDNVEL-VTARNNNKTILHRSDILAELLRDKYVIAVSG 133

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTT  M+               + +  + V   L     +   G  ++ +    E 
Sbjct: 134 SSGKTTTTAMIASIFDH--------SNIDATVIVGGILNSYQSNSRLGKSDIFLIEADES 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 +  +I VIT+I   H+ ++   ++I  A ++      K     L  D       
Sbjct: 186 DGTMLKIPANITVITSINDDHMDHYGTFDDIKHAFSQFIN---KADFAILP-DSVGINYD 241

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHM 292
            + S   G          ++ + +    KQ +     +V +         V+ + IG H 
Sbjct: 242 ASNSMMFGF---------ESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVLSNTIGMHK 292

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   L        K L  F       +R+    +     LI++ Y  +P  
Sbjct: 293 VSNALAAISVAIKLGISDAEIKKGLLEFQGVA---RRFSLIADIKGVKLIED-YAHHPNE 348

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL---- 406
           + A ++    I+   +G+ I ++    E    +  ++F  +   +  +    +V L    
Sbjct: 349 IYATLTAARSIT---KGKVIGII----EPLRFARIRNFFDEFIRIFMM--FDYVILTPVH 399

Query: 407 -------SGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNS--C 455
                   G  +  ++ AL  +   +     D L    FI  S    D+V+   + S   
Sbjct: 400 PPEDKPIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAGSNIA 459

Query: 456 GFYRLINLLLEEFPA 470
              +    L+ E   
Sbjct: 460 KLAKETAALIAEVKV 474


>gi|72383186|ref|YP_292541.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. NATL2A]
 gi|109892720|sp|Q46I40|MURC_PROMT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72003036|gb|AAZ58838.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. NATL2A]
          Length = 494

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 137/383 (35%), Gaps = 45/383 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLA 154
           ++  + A L  +   I ++GS GKTTT   +T   S   K+  A IG          +  
Sbjct: 115 HRSEILAFLIEQKKSIIVSGSHGKTTTSTYITTLFSYANKSPTAIIGGIVPLYKSNYS-- 172

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + +F I E   S    ++F      P+I +IT +   H+ ++  +E++     +  
Sbjct: 173 --CGNSEFLIAEADESDGSLVKF-----NPNIGLITNLELEHVDHYLDLEDLIETMKQFA 225

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  E    +  N+D          S    I+ I       N DF L   +    +   E 
Sbjct: 226 QKCE---CLITNFDCDNLRDNIHGSKWFSIQKII------NIDFALIPKESNGCEIIAEY 276

Query: 275 QLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             + K ++V+     G H   N    +    +         K +        R +     
Sbjct: 277 YEKEKFIDVIKIPVPGIHNLSNAAAAIAACRVAGILFKDIKKGIEKLKLPSRRFEFKGLW 336

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLS-------QISPHGEGRRIAVLGDMCEMGELSQ 386
            N+    LI E Y  +P+ + AAIS+ S       ++S     R + +          ++
Sbjct: 337 RNR----LIVEDYAHHPSEIDAAISIASTIIETKHKLSKILPRRIVTIF--QPHRYSRTK 390

Query: 387 SFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLF 434
            F  + A+ LS          Y+     + G +  ++   L +   ++ ++  +    L 
Sbjct: 391 KFQKEFAKSLSKSDLVFITPIYSAGEDKIEGINNKSIGHELKKINPNLEIYTPDNNQNLI 450

Query: 435 LFIQSSLVDGDVVVVKSSNSCGF 457
             I+   ++ D++++  +     
Sbjct: 451 KLIKEQTIENDLILIMGAGDINL 473


>gi|183221142|ref|YP_001839138.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911233|ref|YP_001962788.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775909|gb|ABZ94210.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779564|gb|ABZ97862.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase); putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 469

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 134/401 (33%), Gaps = 59/401 (14%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++      L S    I++ GS GKT+T  M++  L+ +      I    +   +     +
Sbjct: 91  HRSEFMHLLVSNQKSISVAGSHGKTSTTTMVSQILTEVGLDP-TIMIGGDTSLLQKRGGK 149

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           M    D+ ++E   S   +  FL H    +I ++T I   HL  +   E +  A  +   
Sbjct: 150 MGKG-DYAVYE---SDESDGTFLRHKA--NIRLLTNIDNDHLDYYRTRERLEEAFLDYM- 202

Query: 216 GLEKTGTIFLNYDDS-------------------FFELLKAKSHALGIKTIYSFGKSKNA 256
           G    G + L   D                       LL  KSH       Y   + +  
Sbjct: 203 GFGSPGEVVLFVGDPGIKSVLEIHYRNLTFHNELHLNLLVTKSHTNEEWFSYFLSQFQK- 261

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             Q+       +++ +  QL+ +S  +     G H   N L+ L     +         +
Sbjct: 262 --QITVVLYEVKENQLYFQLENQSYTLELPYPGVHYLTNGLVALTCAYRIGISPSQ---S 316

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             +     G  +R          T+ID+ Y  +P  +K  I  L       +G+   +  
Sbjct: 317 SQILSRYIGVKRRQEILGVWNEVTVIDD-YGHHPTEIKMVIQSLKD-KIKNKGKLHVIF- 373

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSE--- 428
                   ++    DLA+  SL     V+L     +G + +   + +  +  + Y     
Sbjct: 374 -QPHRYTRTKLLLEDLAK--SLLGADFVFLLPIYSAGENPM---EGITSNRFLPYLTGSQ 427

Query: 429 ------TMDGLFLFIQSSLVDGDVVVVKSS---NSCGFYRL 460
                  +      I+S L  GD+++   +      G   +
Sbjct: 428 TTMLDGNIREDLEQIKSHLNKGDLLLCLGAGNVRDWGMELV 468


>gi|58698887|ref|ZP_00373754.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534596|gb|EAL58728.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 462

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 148/435 (34%), Gaps = 55/435 (12%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +I H     +   +V         ++ + V   ++    L++  + A L     +IA++G
Sbjct: 63  YIGHNANNISQAQIVVHSSAIESDNVEL-VTARNNNKTILHRSDILAELLRDKYVIAVSG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTT  M+               + +  + V   L     +   G  ++ +    E 
Sbjct: 122 SSGKTTTTAMIASIFDH--------SNIDATVIVGGILNSYQSNSRLGKSDIFLIEADES 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 +  +I VIT+I   H+ ++   ++I  A ++      K     L  D       
Sbjct: 174 DGTMLKIPANITVITSINDDHMDHYGTFDDIKHAFSQFIN---KADFAILP-DSVGINYD 229

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHM 292
            + S   G          ++ + +    KQ +     +V +         V+ + IG H 
Sbjct: 230 ASNSMMFGF---------ESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVLSNTIGMHK 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   L        K L  F       +R+    +     LI++ Y  +P  
Sbjct: 281 VSNALAAISVAIKLGISDAEIKKGLLEFQGVA---RRFSLIADIKGVKLIED-YAHHPNE 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL---- 406
           + A ++    I+   +G+ I ++    E    +  ++F  +   +  +    +V L    
Sbjct: 337 IYATLTAARSIT---KGKVIGII----EPLRFARIRNFFDEFIRIFMM--FDYVILTPVH 387

Query: 407 -------SGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNS--C 455
                   G  +  ++ AL  +   +     D L    FI  S    D+V+   + S   
Sbjct: 388 PPEDKPIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAGSNIA 447

Query: 456 GFYRLINLLLEEFPA 470
              +    L+ E   
Sbjct: 448 KLAKETAALIAEVKV 462


>gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           lividans TK24]
          Length = 475

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 116/390 (29%), Gaps = 42/390 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +  + G   +PV+G  DV  A     +  R    A  +A+TG+ GKTTT +ML   L 
Sbjct: 87  KPLFTAAGQAGVPVWG--DVELAWRLRGLNGRK--PAPWLAVTGTNGKTTTVQMLASILK 142

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +     A +G+    +   +T      + D    EL    L         +R H A +  
Sbjct: 143 AAGLRTAAVGNIGVSLLDAVT---GEQEYDVLAVELSSYQL----HWAPSLRAHSAAVLN 195

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +AP HL     +E  A+ K  I+EG         N  D   E L   +          F 
Sbjct: 196 LAPDHLDWHGSMEAYAADKGRIYEG--NHVACVYNVADKATEDLVRAADVEEGCRAIGFT 253

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILT 307
                  QL   +            Q  + E       +    H   N L   G+     
Sbjct: 254 LGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELAEVSDVNPPAPHNIANALAAAGLARAFG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    L  F        R     +      +D+S   N  + +A+++         
Sbjct: 314 VSAAAVRDGLRAFT---PDAHRIAHVADVDGVAYVDDSKATNTHATEASLAAYES----- 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
               I  +      G          A+ L         L G     +++AL R       
Sbjct: 366 ----IVWIAGGLAKGATFDELVAGAAKRLRGA-----VLIGADRALIREALARHAPEVPV 416

Query: 428 ETMD--------GLFLFIQSSLVDGDVVVV 449
             +D              +     GD V++
Sbjct: 417 VDLDRTDTGAMLQAVQEARRLARPGDTVLL 446


>gi|222149138|ref|YP_002550095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           vitis S4]
 gi|221736123|gb|ACM37086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Agrobacterium
           vitis S4]
          Length = 471

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 117/376 (31%), Gaps = 52/376 (13%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L     
Sbjct: 82  PHWTVDLARAAGVEIIGDIELFVRERQAKAPDCPFIAITGTNGKSTTTALIGHILRHNGY 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    IG  +     P    + + E     +     L   + P   ++  + P 
Sbjct: 142 DVQIGGN----IGTAVLTLEPPAPDRYYVVECSSYQID----LAPGIDPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-------Y 248
           HL     +E  A+ K  +  G   +    +  DD +   +  +    G + +        
Sbjct: 194 HLDRHGSMENYAAVKERLVSG---SDVAIIGVDDDYCLEIAKRLEEAGKEVVRISKGQPL 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G   +     R  +     + +   L G     +    G H AQN    +     +  
Sbjct: 251 TDGLYNDGQ---RIVRGSGGAAEVIADLNG-----IATLRGSHNAQNAAAAIAACMAVGL 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D     LS F    G   R +    +G    +++S   N  +   A+S   +I     
Sbjct: 303 SKDQIQAGLSSF---AGLKHRMQPVGRRGHVVFVNDSKATNAEASAPALSSYERIYWIAG 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G     L     +  LS  F            I+  +L G         L  ++    S 
Sbjct: 360 G-----LPKQGGIASLSPLFPR----------IAKAYLIGEAASGFAATLGNAVAYEISG 404

Query: 429 TMDGLFLFIQSSLVDG 444
           T+D       +   D 
Sbjct: 405 TLDRALAHASADAQDD 420


>gi|330893180|gb|EGH25841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 170

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 9/176 (5%)

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     +   +AV+T ++  HL     +E  A+AKA++F          +N DD+F   L
Sbjct: 3   QGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW-SNLKCRVINLDDAFGREL 61

Query: 236 KAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                      + ++ +   +A    R  K   +     +        +    +G     
Sbjct: 62  AGIKQES---RLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLS 118

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           N+L  +G +  L   +D  +K L       GR +R           L+   Y   P
Sbjct: 119 NVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRL----GGADKPLVVVDYAHTP 170


>gi|158834074|gb|ABW81842.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834076|gb|ABW81843.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834078|gb|ABW81844.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834080|gb|ABW81845.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834084|gb|ABW81847.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834086|gb|ABW81848.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834094|gb|ABW81852.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 147 IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           I +   L+ M      F   E+    L  ++     +    +V + ++  HL     +  
Sbjct: 14  IEIQQILSNMLTHKATFAAMEVSSHAL--VQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIKTIYSFGKSKNADFQLRK 262
              AK  +F   E      +N DD   +    +   + A+        G  K A    +K
Sbjct: 72  YEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPNAVAVSTSHQIPSGL-KGAWLSAQK 129

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +     + +         E+    +G     N+L+TL  +  L   +D  +KA S   P
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR + ++     G  T+I + Y   P ++K     L+    H +G+   + G   +  
Sbjct: 190 IPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRMHCQGKLWCLFGCGGDRD 242

Query: 383 ELSQSFHIDLAEVLS 397
           +  +     +AE L+
Sbjct: 243 KGKRPLMGKIAETLA 257


>gi|323705854|ref|ZP_08117426.1| DUF1727 protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534850|gb|EGB24629.1| DUF1727 protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 122/354 (34%), Gaps = 58/354 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------VDFGI 164
           I +TG+ GKTTT  ++   L S  K         N +    T+     D       D G+
Sbjct: 51  IVVTGTNGKTTTSGLIAEILRSSGKKVVHNREGANMLSGIATVLIKNSDIFGNISCDTGV 110

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           FE+       +  + + + P + V+T      L  +  ++       E    L K   + 
Sbjct: 111 FEV---DEANMPLVLNDINPKVVVVTNFFRDQLDRYGELDTTIKKVKESLSKLPKDSMLL 167

Query: 225 LNYDDSFFELL----------------------------KAKSHALGIKTIY---SFGK- 252
           LN D+ F   L                            +      G K +Y    +G+ 
Sbjct: 168 LNADEPFTASLGDDLNINVFYYGILDKLNYGYSLSPAFEQKYCPVCGGKYVYKDVFYGQL 227

Query: 253 -----------SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                          DF     K   +    +++ + K + V  H  G +   N++ ++ 
Sbjct: 228 GDYYCPKCGKSRPKLDFGALDIKLTEDGISFKLKYKEKLINVKSHLTGAYNVYNVMASVA 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L          L+ + P  G   R +    +G  T+I+     NP    + +++L 
Sbjct: 288 TNVLLGISFSDIQTGLNNYTPIAG---RLQKTYLKGKKTIINLI--KNPIGFDSTLNMLR 342

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +I+       IA+  +  +  ++S  + +D+   +S   I+HV  SG     + 
Sbjct: 343 EINKPLNL-LIAINDNYADGRDVSWLWDVDIENFVSHTKINHVVTSGLRAEDMA 395


>gi|119477390|ref|ZP_01617581.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119449316|gb|EAW30555.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 456

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 95/268 (35%), Gaps = 20/268 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A  G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAAAGTHGKTTTSSMLAWILEYAG---MSPGYLIGGIPANFGVSARLGESSFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  +  RP  A++  +   H   F  +  I      +   + + G I +  
Sbjct: 162 YDSAFFDKRSKFIHYRPRTAILNNLEFDHADIFDDLPAIQRQFHHLVRLIPRNGRIIVPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEVV 284
           +D     +  +    G++   +   S  AD+  R     S+ S  +V L+G    +++  
Sbjct: 222 NDQNITEVIGQGLWSGLEKT-TLRDSITADWCARAL--VSDGSEFDVLLKGVVVGNVKWD 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           H   G H   N +  +     +    + A +AL  F   +   +R           + D+
Sbjct: 279 HS--GDHNLCNGISAIAAARHVGVTPEIAAEALCQFEGVK---RRMELLGKPRGIAVYDD 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI 372
            +  +P +++   + L+ +     G +I
Sbjct: 334 -FAHHPTAIE---TTLAGLRAKVGGEKI 357


>gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis]
          Length = 873

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 129/422 (30%), Gaps = 84/422 (19%)

Query: 22  VPQGFVNGISI-DSRSIAPQEAFFAIKGP--HYDGHDFILHAVQKGAGLVVVNTDMVASI 78
            P   +  I   +S S      +  +       DGHD+   A + GA  V+        +
Sbjct: 285 APDVDIRNILTCNSISGGEDSLYVCVPSADGQCDGHDWADEASEMGAVAVIAGR----PL 340

Query: 79  GSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +PV  VDDV  AL  LA A   R   +   + + GS GKTTT  +         + 
Sbjct: 341 PDALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMFEETAER 400

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE------------------------------ 166
              IG+    I   L   R+  + +  + E                              
Sbjct: 401 CGMIGT----IEYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQ 456

Query: 167 -------LGM----SHLGEIRFLTHLVRPHIAVITTIAPAHLSN---------------- 199
                  L M    +   +      LV    A +      H+                  
Sbjct: 457 VPTTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAEKEAGA 516

Query: 200 ----FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSK 254
                +  + +A     +   +E+   +  N DD       A++ A    T+ ++   S+
Sbjct: 517 EGGSQACHDRVAELFRRVQGDVERQRAVI-NIDDPLGAE-LAQAAAAAGATVLTYSADSR 574

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +AD    K K    ++ + V      ++++   +G     N+L  +         +   +
Sbjct: 575 DADIYAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIV 634

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             +       G   R         F+++ +S  + P  +   +    ++   G  R + V
Sbjct: 635 AGIEAVDIIPG---RCEIIDEGQPFSVVVDS-ASTPEQLSRLLD---EVKEAGSKRVLLV 687

Query: 375 LG 376
            G
Sbjct: 688 FG 689


>gi|302876095|ref|YP_003844728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307686818|ref|ZP_07629264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302578952|gb|ADL52964.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 448

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 140/399 (35%), Gaps = 64/399 (16%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIA 112
           H +I  A +                  L+IPV          N+L +A R       II 
Sbjct: 81  HKYIEKACK------------------LNIPVI---------NELELAFRYFPQGVKIIG 113

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GKTTT  ++   L         +G+    +   ++  +   D D  + E+    L
Sbjct: 114 ITGTNGKTTTTTIIYEILKKAAVDAFLMGNIGYPVCSFVSQLK---DNDIALMEVSDHQL 170

Query: 173 GE-IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              I F T+     I+V+T I+ AHL      +   S K  IF    K+    LN DD  
Sbjct: 171 CNVIEFKTN-----ISVLTNISEAHLDFHGSYDIYKSMKKRIFNHHTKSDMAILNLDDKE 225

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L         K  +SF  S      +           + + L    ++      G H
Sbjct: 226 VLDLTKDIK--STKKYFSFSSSNKLGCTITDGYIYYNNDKI-ISLDEVKIK------GKH 276

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N++  + +V  L  +       L  F   E    R             ++S   N  
Sbjct: 277 NYENVMAAIAVVKELGIENQVITDLLKTFGGVE---HRIEYVKTINNIDFYNDSKATNIK 333

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S + A+S  ++         I +LG +    +   SF   L E LS  N+  +   G   
Sbjct: 334 STQTALSSFTK-------PTILLLGGL----DRGHSF-DSLKEYLS--NVKLIVAFGEAK 379

Query: 412 LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + ++D   +  I  +   ++        +S  +GDVV++
Sbjct: 380 IRIEDFAKKCGIPCNLVNSLGEATEIAYNSASEGDVVLL 418


>gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum NCC2705]
 gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum DJO10A]
 gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705]
 gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum
           subsp. longum F8]
 gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 517

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 148/433 (34%), Gaps = 54/433 (12%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + IQG      P           GI+ D+R + P       KG  +   +++    + 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKG-QFKA-EYLNGIDEA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           G    V  T+  A+  +   P   V+D   A++ L+       +++ T+I +TG+ GKTT
Sbjct: 75  GLAAYVAETEYSAATAT---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTT 131

Query: 122 TKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDV-----DFG 163
           T       ++++     A   S +N +     +             RM  +       + 
Sbjct: 132 TSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYL 191

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTG 221
           + E+        R   + +   +A    I+P H+S       E+    K +I    +   
Sbjct: 192 VMEVSSQAYKVDR--VYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIVNAKS-- 247

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------NADFQLRKWKQCSEQSWMEVQ 275
            + L  D    +LL+  + A GI  + +F          +AD     W      +   + 
Sbjct: 248 -LVLGADSLHADLLREDAEAAGIG-VTTFALHDADNAGTSADVVA--WPADPAHASFHIA 303

Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +++   H  I G     N    + I   +   +D A  AL         G+  +   
Sbjct: 304 DGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDA-DALHAIESVRIAGRMEQFRD 362

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q     I + Y  N AS+ A +  + +       R   V G     G  +     ++ E
Sbjct: 363 PQSNTLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGS---AGNKAYDRRKEIVE 418

Query: 395 VLSLYNISHVWLS 407
                  + ++ +
Sbjct: 419 AAENRIANFIFTA 431


>gi|49474458|ref|YP_032500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           quintana str. Toulouse]
 gi|62900524|sp|Q6G122|MURD_BARQU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49239962|emb|CAF26367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           quintana str. Toulouse]
          Length = 466

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 123/412 (29%), Gaps = 57/412 (13%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----VLGALNKLAVAARLRSKATI 110
           +F+   +  G  L       V         +  V D    V    + L  +         
Sbjct: 65  EFVALILAPGVPLTYPQPHWVVDKAR-QADIEIVGDIELFVRARNHFLQHSGFRDQDVPF 123

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAITG+ GK+TT  +L   L  +       G+    I       +  V     + E    
Sbjct: 124 IAITGTNGKSTTTALLAHLLEQMGYDVQMGGNIGTAIL----TLKPFVKKRIYVIECSSF 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     LT  ++P I ++  +   H+           AK  +  G       F++ D++
Sbjct: 180 QI----ELTPSLQPTIGLLLNLTSDHIDRHGSFAAYVQAKRRLVTG---ASYAFISVDNA 232

Query: 231 FFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             + L  +    G + + +  K       F   + K  S        L    +  +    
Sbjct: 233 VCQALYQQLLDEGHQ-VGAVSKEHFVENGFYADRTKLFSVCQGQRHMLAD--LADMTALR 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H AQN LM L  +  L                 +G   R +     G    I++S   
Sbjct: 290 GSHNAQNALMVLATLQALKISDPHI---EKYLASYKGLAHRMQQVRKMGPVLFINDSKAT 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVLSLYNISHVWL 406
           N  +   A+S  + I          V G   E G  +    FH           I   +L
Sbjct: 347 NAEASAPALSTFNDIF-------WIVGGQAKEGGIEALRGFFHK----------IRKAYL 389

Query: 407 SGFHVLALKDALPRSI---------HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +  +          +  +  T+D +    + +     VV+ 
Sbjct: 390 IGEAAQEFAGVIGSAFPFSMSLTLENAVHEATVDAMCCKAKEA-----VVLF 436


>gi|254513896|ref|ZP_05125957.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
 gi|219676139|gb|EED32504.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
          Length = 928

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 127/395 (32%), Gaps = 54/395 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----------- 156
             I AITG+ GKTTT  ML   L     T     +   +I   LT+A             
Sbjct: 491 IPIAAITGTNGKTTTSRMLAHILKMSGLTVGQTSTDGVYIDGRLTVAGDMTGPTAAQIVL 550

Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEI 213
               V+  + E   +  G +R      R +++    IA  HL       +E++A  K  +
Sbjct: 551 RDPSVNAAVME--TARGGILRSGLGYQRSNVSACLNIAADHLGLKGVNSLEDLAEVKRVV 608

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY------SFGKSKNADFQLRKWKQCS 267
            E         LN DD     +     A  +  +          +   A       +Q  
Sbjct: 609 VE--VARDAAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGI 666

Query: 268 EQSWMEVQLQGKS---------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               + +  +            +     G   H  QN +    +   +  D++   + L 
Sbjct: 667 NGGMITLYDEQGHNIPLLWTHLIPATLEGRAMHNVQNAMFAAALAYHMHIDLENIRQGLR 726

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +        ++  F +I + Y  NPA++K    V+ +      GR+I VL  M
Sbjct: 727 TFDSTFFQSPGRLNVYDKHPFKVILD-YAHNPAAVKMVCDVVDRY--EIGGRKIVVL-TM 782

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL------SGFHVLALKDALPRSI--------HV 424
              G+      +++A + +  +  H          G     +   L + +         +
Sbjct: 783 P--GDRRDEDIVEVAGIAAG-HFDHYICRRDDNLRGREPSEVPALLKQGLLAGGVPEDRI 839

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              E  +            GD++++ + +    ++
Sbjct: 840 QIIEREEEANQAALDMARGGDLLLILADHVTRSWK 874


>gi|33864565|ref|NP_896124.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. WH 8102]
 gi|44888172|sp|Q7UA71|MURC_SYNPX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33632088|emb|CAE06544.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH
           8102]
          Length = 467

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 138/414 (33%), Gaps = 55/414 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK-TTTKEM 125
            +  +   +       + ++   D+L AL               IA+ GS GK TT+   
Sbjct: 82  AIPTSNPELRRARDAGLEIWHRSDLLAALIDQQA---------SIAVAGSHGKTTTSTLT 132

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            T+ + + +   A IG     +G               + E   S    ++F     RP 
Sbjct: 133 TTLLMEAGEDPTAIIGGIVPCLGSNG----HAGHGRLLVAEADESDGSLVKF-----RPQ 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT +   H  ++ G++++ +      +G ++   +  N D     +LK         
Sbjct: 184 LGLITNLELDHTDHYDGLDDLINTMRLFADGCDQ---VLANRDCP---ILKEHIQPDAWW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           ++ S   +   DF     +   ++        G  + + +    G H   N    L    
Sbjct: 238 SVTS---ANGVDFAALPLQLDGDRCLARFYENGAPVGDFMLPLPGLHNLSNAAGALAACR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI- 363
           +     +  +         +  G+R+          ++D+ Y  +P+ +KA +++   + 
Sbjct: 295 MEGIPFERLVNG---LTALKPPGRRFDLRGTWEGRYIVDD-YAHHPSEVKATLAMAQLMV 350

Query: 364 ------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSG 408
                  P    R +AV          +Q F    A  L          +Y+     L G
Sbjct: 351 SSGRSPFPSPPQRLLAVF--QPHRFSRTQEFLESFASALQNCDSLLLAPVYSAGEEPLKG 408

Query: 409 FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFY 458
                L D    L   + +  ++ +D L   +++     D+V+   +    G +
Sbjct: 409 VCSQTLADRIQELKPDLEIAVADNLDHLTQLVRTRSQREDLVLAMGAGDVNGLW 462


>gi|295109206|emb|CBL23159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus obeum
           A2-162]
          Length = 451

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 126/379 (33%), Gaps = 43/379 (11%)

Query: 80  SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              IP+     +  L    ++ +A R   K  ++AITG+ GKTTT  +L   +   +++ 
Sbjct: 80  PTDIPIVKSFYEQGLPVWGEVELAYR-TGKGRVLAITGTNGKTTTTALLGKIMGDAEESV 138

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             +G+         + A    D    + E+    L  I        P ++ I  I   HL
Sbjct: 139 FVVGNIGTPYT---SKALEMQDNTTTVAEISSFQLETIEEFA----PKVSAILNITEDHL 191

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           +    +EE    K  I +         LNY+D            +  K +Y         
Sbjct: 192 NRHHTMEEYIRVKELIVKNQTADDFCILNYEDPVLREF---GRNITPKVVYFSS------ 242

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            +  +     +   + ++   + + +V       +G H  +N++    +       V++ 
Sbjct: 243 VRRLEEGIYLDGDQIILKTSEEEIPLVRTGELKLLGQHNFENVMAASAMAYYAGVPVESI 302

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K++  F   E    R      +      ++S   NP +    I  ++        R   
Sbjct: 303 RKSICEFTAVE---HRIEYVTEKNGVVYYNDSKGTNPDAAIKGIQAMN--------RPTL 351

Query: 374 VLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETM 430
           ++G   + G    +  +    +      + ++ L G     +K A  R         E +
Sbjct: 352 LIGGGYDKGSGYDEWLNAFDGK------VRYLVLIGQTRDKIKAAAERLGVCPCILCENL 405

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           +            GD V++
Sbjct: 406 EEAVKVCAEKANPGDAVLL 424


>gi|99035085|ref|ZP_01314874.1| hypothetical protein Wendoof_01000291 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 507

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 151/460 (32%), Gaps = 81/460 (17%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI H     +   +V         ++ + +   ++    L++  + A +     +IA++G
Sbjct: 84  FIGHNANNISQAQIVVHSSAIESDNVEL-IAAKNNNKTVLHRSDILAEIMKGKYVIAVSG 142

Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           S GKTTT  M+              +G   N       L       D  + E   S    
Sbjct: 143 SSGKTTTTAMIASIFDHSGIDATVTVGGILNSYKSNFKLG----GSDTFLIEADESDGTM 198

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     +   IAVIT+I   H+  +   + I +A ++        G+  L  D    + 
Sbjct: 199 LK-----IPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNN---AGSAVLP-DSVDIDY 249

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-----------LQGKSMEV 283
               S         +FG  +N   +    KQ +     +V             +GK  E+
Sbjct: 250 DAGNS--------ITFGF-ENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTEM 300

Query: 284 ----------------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                           + + IG H   N L  + +   L        K L  F       
Sbjct: 301 SSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVA--- 357

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-- 385
           +R+    +     LI++ Y  +P  + A ++    I+   +G+ I ++    E    +  
Sbjct: 358 RRFSLIADIKGVKLIED-YAHHPNEIYATLTAARSIT---KGKVIGII----EPLRFARI 409

Query: 386 QSFHIDLAEVLSLYNISHVWL-----------SGFHVLALKDALPRSIHVHYSETMDGLF 434
           ++F  +   +  +    +V L            G  +  ++ AL  +   +     D L 
Sbjct: 410 RNFFDEFIRIFMM--FDYVILTPVHPPEDKPIPGCGIDDIQKALISNGFNNTKIMNDALL 467

Query: 435 --LFIQSSLVDGDVVVVKSSNS--CGFYRLINLLLEEFPA 470
              FI  S    D+V+   + S      +    L+ E   
Sbjct: 468 ISHFISDSTSPSDIVLFIGAGSNIAKLAKETAALIAEVKV 507


>gi|319425223|gb|ADV53297.1| UDP-N-acetylmuramate [Shewanella putrefaciens 200]
          Length = 464

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 127/363 (34%), Gaps = 47/363 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSACLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLIRTVPGEGKIIWP 223

Query: 227 YDDSFFEL------LKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +          + H    ++I   +GK+ + D               EV   G+
Sbjct: 224 VDVQAVKQTIDMGCWSEQEHYHTAESITGWYGKALSDDCHC-----------FEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  V+    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPK---RRLELLGTVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 ISVYDD-FAHHPTAIA---TTLKGMRAKVGQSKIIVV-----LEPRSNTMKSGVHKDTLA 380

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  S I V     +D +   + ++   GD +VV  
Sbjct: 381 Y-SMMQADEAFLYQADTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVVM- 438

Query: 452 SNS 454
           SN 
Sbjct: 439 SNG 441


>gi|89902196|ref|YP_524667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodoferax
           ferrireducens T118]
 gi|118595682|sp|Q21SW7|MURD_RHOFD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89346933|gb|ABD71136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodoferax
           ferrireducens T118]
          Length = 506

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 127/380 (33%), Gaps = 44/380 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  L           ++A+TG+ GKTT   +  + +    K+ A  G+    +   L 
Sbjct: 108 QALADLKAT--QNYTPKVLAVTGTNGKTTVTALTGLLVERGGKSVAVAGNIGPTLLDTL- 164

Query: 153 LARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           +  +      +  + EL    L           P  A +  I   HL     +    +AK
Sbjct: 165 IQHLAAGTLPEVWVIELSSFQLEG----ETGFEPSAAAVLNITQDHLDWHGSMAAYVAAK 220

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADFQLRK 262
           A +F     TG + LN +D     +     + K     ++   +FG     +  DF L +
Sbjct: 221 AHVF---GATGLMILNREDPQVMAMLPEPVRVKLQRPQLRAHVTFGADLPRRPGDFGLEQ 277

Query: 263 WK------QCSEQSWMEVQLQGKSMEVVHHGIGYHMA------QNMLMTLGIVSILTADV 310
                   +  E        +G++ E+    +    A       N +  L  +++  A  
Sbjct: 278 VNGMLWLVRALEADETLKNRKGETPELFLQRLMPADALRIRGRHNAVNALAALALAQAAG 337

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                 L       G   R             D+S   N  +  AA++ L       E +
Sbjct: 338 CALGPMLYGLRDYRGEPHRVAPIGIFNEVEFFDDSKGTNVGATVAALAGLGS-----ERK 392

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
            I +LG   +  + +      L + +S Y    V L G     L+ AL    + +  +E+
Sbjct: 393 VIVILGGEGKGQDFAP-----LVDPVSRY-ARAVVLIGRDAPLLRAALQATHVPLLEAES 446

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           M        +    GD V++
Sbjct: 447 MAQAVALANAQAHAGDAVLL 466


>gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           coelicolor A3(2)]
 gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
 gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptomyces coelicolor A3(2)]
 gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
          Length = 471

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 116/390 (29%), Gaps = 42/390 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +  + G   +PV+G  DV  A     +  R    A  +A+TG+ GKTTT +ML   L 
Sbjct: 83  KPLFTAAGQAGVPVWG--DVELAWRLRGLNGRK--PAPWLAVTGTNGKTTTVQMLASILK 138

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +     A +G+    +   +T      + D    EL    L         +R H A +  
Sbjct: 139 AAGLRTAAVGNIGVSLLDAVT---GEQEYDVLAVELSSYQL----HWAPSLRAHSAAVLN 191

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +AP HL     +E  A+ K  I+EG         N  D   E L   +          F 
Sbjct: 192 LAPDHLDWHGSMEAYAADKGRIYEG--NHVACVYNVADKATEDLVRAADVEEGCRAIGFT 249

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILT 307
                  QL   +            Q  + E       +    H   N L   G+     
Sbjct: 250 LGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELAEVSDVNPPAPHNIANALAAAGLARAFG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    L  F        R     +      +D+S   N  + +A+++         
Sbjct: 310 VSAAAVRDGLRAFT---PDAHRIAHVADVDGVAYVDDSKATNTHATEASLAAYES----- 361

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
               I  +      G          A+ L         L G     +++AL R       
Sbjct: 362 ----IVWIAGGLAKGATFDELVAGAAKRLRGA-----VLIGADRALIREALARHAPEVPV 412

Query: 428 ETMD--------GLFLFIQSSLVDGDVVVV 449
             +D              +     GD V++
Sbjct: 413 VDLDRTDTGAMLQAVQEARRLARPGDTVLL 442


>gi|220918632|ref|YP_002493936.1| UDP-N-acetylmuramate [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956486|gb|ACL66870.1| UDP-N-acetylmuramate [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 474

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 114/357 (31%), Gaps = 35/357 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             + + G+ GKTTT  M+   L    +  +  +G           L   P      + E 
Sbjct: 112 HGVVVVGTHGKTTTSAMMGFVLHHAGRDPSFLVGGVTRDFDSNFRLGSGP----HFVVEG 167

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                         +  RP  A+ T+    H   +       SA     + L   G +  
Sbjct: 168 DEYDTAYFDKGPKFLHYRPRTAIFTSCELDHADIYRDEAHYESAFERFADLLPPDGFLAT 227

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
                    + A++       I ++G     AD++ R      + +   +  +G  + EV
Sbjct: 228 CAAYESVRRISARARC----RIETYGVDVAGADWEARGLSLGPDGARFTLVRRGAPLAEV 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L      + L          L  FH   G  +R       G  T+ID
Sbjct: 284 HLPVGGAHNVENALGVAAAATALGLSPAEIAAGLGAFH---GVRRRQEVRGTAGGVTVID 340

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNIS 402
           + +  +P   +A    L+ +     G R+    +        ++ H  D ++  +    +
Sbjct: 341 D-FAHHP---RAVKKTLAAVRGSFPGARMLAAFE-PRSNTSRRNLHQADYSDPATWSGAA 395

Query: 403 HVWL--------SGFHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDV 446
            V++                 DA+ R++  H       + +D L   I +    GDV
Sbjct: 396 EVFILRPAPTDRVPEAERLDVDAVVRALAAHGLPARVFDAVDPLVEAIAADARPGDV 452


>gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK355]
          Length = 400

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 140/403 (34%), Gaps = 62/403 (15%)

Query: 83  IPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IPV  V+DV  A++   +        K  ++A TG+ GKTTT       LS      A +
Sbjct: 3   IPVLLVNDVKQAMSLLAMEFYDHPEKKLKLLAFTGTKGKTTTAYFAYQILSQS-HRPALL 61

Query: 141 GSYNNHIG-----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            + N  +                  + +    +  D    I E+       ++   + + 
Sbjct: 62  STMNTTLDGETFFKSTLTTPESLDLIKMMAQALSNDRTHLIMEVSSQAY--LKKRVYGLT 119

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + V   I+P H+        E+    K  + +    +  + +N     F+++K +  +
Sbjct: 120 FDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN---SRAVIVNSGMDHFQIVKEQVAS 176

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
           +           ++  +        ++      +  GK +       IG    +N +   
Sbjct: 177 M-----------EHDFYGADSSNTITDSQAFSFEATGKLAGHYDIQLIGRFNQENAVAAA 225

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L A ++   K ++        G+        G    +D  Y  N  S+   +SV+
Sbjct: 226 LACLRLGASLEDIKKGIAA---TRVPGRMEVLTQKNGAKVFVD--YAHNGVSLSNLLSVV 280

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
            +   H +G+ I +LG     G   +S   D   +L+ +    V L+         LA+ 
Sbjct: 281 QE---HQKGKIILLLGA---TGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIA 334

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV--KSS 452
           + +   I  +  E +      I+ +L     +G+ V++  K +
Sbjct: 335 EEIASYIS-YPVEKIADREEAIKKALSLTEREGEAVILAGKGA 376


>gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
 gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
          Length = 474

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 123/368 (33%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +G+    +   + L
Sbjct: 99  GDVELAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIGVSLLDAV-L 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A  P DV     EL    L         VRPH A +  +AP HL     +   A+ K  I
Sbjct: 158 AEEPYDV--LAVELSSYQL----HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRI 211

Query: 214 FEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +EG         N  D   E L +A     G + I ++ G  + ++  + +         
Sbjct: 212 YEG--NQVACVYNAADPATEKLVRAADVEEGCRAIGFTLGTPRPSEVGVVEGLLVDRAFV 269

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +   Q + +  +   +    H   N L    +              L  F P      R
Sbjct: 270 PDRTEQAQELAELADVNPPAPHNIANALAAAALARAYGVPATAVRDGLRAFRPDP---HR 326

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       +D+S   N  + +A+++             I  +      G       
Sbjct: 327 IEHVATIDGVAYVDDSKATNTHATEASLAAYEP---------IVWIAGGLAKGATFDELV 377

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSET--MDGLFLFIQSSL 441
              A+ L       V L G     + +AL R       + +  ++T  M           
Sbjct: 378 QGAAKRLR-----GVVLLGRDRALIAEALARHAPNVPVVDLDRADTGAMSEAVREAAGLA 432

Query: 442 VDGDVVVV 449
            +GD V++
Sbjct: 433 REGDTVLL 440


>gi|212637106|ref|YP_002313631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
 gi|212558590|gb|ACJ31044.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
          Length = 461

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 128/356 (35%), Gaps = 33/356 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L   P    F + E  
Sbjct: 109 VLAVSGTHGKTSTASMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSP----FFVVEAD 164

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P   VI  +   H   F  ++ I      +   +   G +   
Sbjct: 165 EYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKVIWP 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
            D    + +         +    +  +  A  +         +    EV L+G S  VV 
Sbjct: 225 ADAKSVQQVIELGCWSEQEM---YHLNSAATGWYATNL--SEDGHEFEVFLEGDSQGVVN 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H  +N +M +     +    D AI+AL  F P +   +R           + D+
Sbjct: 280 WQLIGQHNIENAVMAIAAARHVGVKPDAAIEALVKFAPPK---RRMELIGCVAGVEVYDD 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HID-LAEVLSLY 399
            +  +P ++    + L+ +       ++ V+     +   S +     H D LA  L+L 
Sbjct: 337 -FAHHPTAIT---TSLAGMRAKVGAGKVTVI-----LEPRSNTMKSGVHKDTLANSLALA 387

Query: 400 NISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           + ++++ +G     +  A+   ++ V     +D +     +    GD ++V  SN 
Sbjct: 388 SNAYLYQAGNIDWDISAAMSTAAVPVEVLFDIDEIIAKAVAQACSGDTIIVM-SNG 442


>gi|148259082|ref|YP_001233209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           cryptum JF-5]
 gi|146400763|gb|ABQ29290.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           cryptum JF-5]
          Length = 461

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 103/293 (35%), Gaps = 25/293 (8%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + V     A++ +  +P+F   ++L  A+     +AR       + ITG+ GK+TT  +
Sbjct: 81  ALPVPHPEAAAVMARGVPIFTDAELLFRAVRDSGSSARF------VGITGTNGKSTTTAL 134

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+      A  G+        L L R+  D    + E+    L     + ++ R  
Sbjct: 135 LAHILADAGIEVAAGGNLGP---AALALPRLGDD-GVYVLEMSSYML---ERIVNM-RFS 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              +  + P HL     +    +AK+ +F G E         DD+    +  +    G +
Sbjct: 187 AGAMLNLTPDHLDRHGNMAGYEAAKSRLFVGQEAGDVAVFGIDDAATAAMATRFED-GKR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I      + AD   R  K       +        ++      G H AQN      +   
Sbjct: 246 RIVRISGCQRADIFARGRKLVDHSGVI------ADLDAAAALPGTHNAQNAAAAAALALA 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                +   +A++ F    G   R R   +    T ID+S   N  S   A+ 
Sbjct: 300 FGVPREVIGRAMASF---PGLPHRQRVVASVAGVTFIDDSKATNADSAARALD 349


>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           caviae GPIC]
 gi|33301359|sp|Q821S1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           caviae GPIC]
          Length = 419

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 127/410 (30%), Gaps = 84/410 (20%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           + F    G     H  ++ A ++G                  IP+  V DV  A      
Sbjct: 61  DLFVRSPGVKP-SHSLVVEAKRRG------------------IPI--VTDVQLAFQDPEF 99

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     I ITGS GKTTT   L   L S+      +G+    I       +   + 
Sbjct: 100 HRYPS-----IGITGSAGKTTTVLFLVHLLRSMGMGAFAMGNIGVPI------LQAMREK 148

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + E+    L E    T ++    A I  I+  HL     ++  + AK  I + L+  
Sbjct: 149 GIRVVEISSFQLTEQEIETPVLS--GAAILNISENHLDYHQSLQNYSEAKRNITKCLQS- 205

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                               +L +    S GKS   D+         + S          
Sbjct: 206 ------------------VESLWVGEWLSPGKS-YLDYTKEIASVLDKGS---------- 236

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                  +  H   N      + + I    ++  ++AL  F        R      +   
Sbjct: 237 ---ALKPLYLHDRSNYCAAYALANEISNVPLEAFLQALQTFEKPP---HRIEYLGEKDGV 290

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           + I++S     +S++ A+  + +         I +LG   +  + +          +   
Sbjct: 291 SYINDSKATTMSSVEKALIAVKE-------NVIVILGGRNKGSDFTS------LIPILTQ 337

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + H+   G     +  AL  S+ +  +  +       QS    GDV+++
Sbjct: 338 TVKHIVAMGECRNEIAQALSGSLPLTQARDLQEAVSMAQSIAQPGDVILL 387


>gi|120600140|ref|YP_964714.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
 gi|120560233|gb|ABM26160.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
          Length = 464

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 127/363 (34%), Gaps = 47/363 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSACLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLIRTVPGEGKIIWP 223

Query: 227 YDDSFFEL------LKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +          + H    ++I   +GK+ + D               EV   G+
Sbjct: 224 VDAQSVKQTIDMGCWSKQEHYHTAESITGWYGKALSDDCHC-----------FEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  V+    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPK---RRLELLGTVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 ISVYDD-FAHHPTAIA---TTLKGMRAKVGQSKIIVV-----LEPRSNTMKSGVHKDTLA 380

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  S I V     +D +   + ++   GD +VV  
Sbjct: 381 Y-SMMQADEAFLYQADTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVVM- 438

Query: 452 SNS 454
           SN 
Sbjct: 439 SNG 441


>gi|283783550|ref|YP_003374304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
 gi|283441283|gb|ADB13749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
          Length = 533

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 149/389 (38%), Gaps = 46/389 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           D HDF      K   +V        T  +    S +IPV    +V  A      + R   
Sbjct: 65  DIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMS--EVELAWRLRVPSQRTNK 122

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITG+ GKT+T EM +  L++       +G+    +    + A +  + D    E
Sbjct: 123 PAYWIGITGTNGKTSTTEMTSAMLTACGLNAPAVGNIGKSV----SHAALECEHDALCVE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A IT IA  HL    G+E  A  K+++F  ++K   +  N
Sbjct: 179 LSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMESYARDKSKVFNNVQK--ALVYN 232

Query: 227 YDDSFFELLKAKSH-ALGIKTI-YSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGK 279
             D     L   +  A G K I ++  + K+ +  ++          +  +   ++   +
Sbjct: 233 AQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVKDGWIVDNSGVAGGTKGTLKPIVE 292

Query: 280 SMEVVHH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             E+ H       +  H+  + L  L +   LT DVD++++AL  F P   R +     +
Sbjct: 293 LRELKHLCEPDGSVYPHLLADALTALALALGLTGDVDSSVRALREFAPGGHRIQTVATLM 352

Query: 335 NQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++          +D+S   N  +  A+++  +  S       IA        G L++  H
Sbjct: 353 SEDENPSHCIRFVDDSKATNAHAACASLASFANNSVVW----IA--------GGLAKGGH 400

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +      L+ I  V + G     + +AL
Sbjct: 401 FEDLIANQLHVIKAVVVIGIDQRPIVEAL 429


>gi|227824967|ref|ZP_03989799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
 gi|226905466|gb|EEH91384.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
          Length = 459

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 89/291 (30%), Gaps = 35/291 (12%)

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +        P IA I  I P H      +E   +AKA+IF        + L
Sbjct: 162 ELSSFQLEGM----TTFHPQIACIVNITPDHFERHGNMENYINAKAQIFAHQTAEDVLVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           NYD+     L +++ +     ++ F   +    +L K     E +     + G    V  
Sbjct: 218 NYDNEPDRKLASRAAS----RVFFFSTEE----KLEKGAWIEEGN-FVFDVDGSKHVVCK 268

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  QN+L  +         V+       V    EG   R            
Sbjct: 269 VSDLKIFGAHNEQNVLAAILCCHFAGVTVE---NMEKVLKAFEGVEHRLEYVTTIKGVPY 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S   AI    +      G  I + G   +M +L++         ++    
Sbjct: 326 YNDSKATNTDSAVKAIEAFKE------GHVILLAGGHDKMTDLTEFMQ------VTARKT 373

Query: 402 SHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L G        A  ++     V    + +              VV++
Sbjct: 374 DALILLGEARQRFLKAAQKNGVKNIVMCDGSFEDAVRLAYDMAKPPQVVLL 424


>gi|124022231|ref|YP_001016538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962517|gb|ABM77273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 460

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 106/351 (30%), Gaps = 43/351 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA R  S    IAITG+ GKTT   +L   L S        G+  +         R
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLKAPMGGNVGHAAAEIALKWR 157

Query: 156 MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            P     D+ + EL       I     +  P I + T + P HL     ++     K  +
Sbjct: 158 QPNAQRPDWLVMELSSYQ---IEAAPEIA-PRIGIWTNLTPDHLERHGTLDAYRKIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK---SKNADFQ--LRKWKQCSE 268
              LE++     N DD        +S       + S G    +  ADF        +  +
Sbjct: 214 ---LERSEIRIFNGDDPDLS--SQRSSWDKGLWVSSEGPGTANHRADFWIDAEGLVRDPQ 268

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +                  G H  QN+LM                   +      G   
Sbjct: 269 GALFAAS--------ALAMPGQHNLQNLLMVTAAARQTGLPAKAI---EASLRSFPGVPH 317

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     +    ++ ++S   N  +    +  +   +       + + G   + G+ S   
Sbjct: 318 RLEELGHIQQMSVYNDSKATNYDAACVGLKAVPAPA-------VVLAGGQTKQGDASGWL 370

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLF 436
                + L L     V L G     L D +  S     +H    ++     
Sbjct: 371 -----KQLDLKAC-AVILFGAGAAELNDLIETSGFRGELHCCSNLNAAVTL 415


>gi|158834066|gb|ABW81838.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 147 IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           I +   L+ M      F   E+    L  ++     +    +V + ++  HL     +  
Sbjct: 14  IEIQQILSNMLTHKATFAAMEVSSHAL--VQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIKTIYSFGKSKNADFQLRK 262
              AK  +F   E      +N DD   +    +   + A+        G  + A    +K
Sbjct: 72  YEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPNAVAVSTSHQIPSGL-QGAWLSAQK 129

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +     + +         E+    +G     N+L+TL  +  L   +D  +KA S   P
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR + ++     G  T+I + Y   P ++K     L+    H +G+   + G   +  
Sbjct: 190 IPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRMHCQGKLWCLFGCGGDRD 242

Query: 383 ELSQSFHIDLAEVLS 397
           +  +     +AE L+
Sbjct: 243 KGKRPLMGKIAETLA 257


>gi|167574659|ref|ZP_02367533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia oklahomensis C6786]
          Length = 470

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 126/377 (33%), Gaps = 38/377 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E + ++        +  FG                 E     V  + + +  V 
Sbjct: 221 GREDALERVLSRG---CWSDVERFGVDGGWQALPAEDGVPVDE--RFAVYWRSERVGAVD 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 276 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I+ L         R +AVL      M  +G +            SL +
Sbjct: 333 -FAHHPTAIETTIAGLRARIGGENSRILAVLEPRSNTMK-LGTMKAQL------PASLAD 384

Query: 401 ISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G          +L DAL P     H  + +  L   + ++   GD V+V  SN
Sbjct: 385 ADLVFGYGASTGRDALGWSLPDALAPLGDKAHAFDDLHALVKAVTAAARPGDHVLVM-SN 443

Query: 454 SCGFYRLINLLLEEFPA 470
             GF  +   LL+   A
Sbjct: 444 G-GFGGVHQKLLDALSA 459


>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
 gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
          Length = 450

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 122/348 (35%), Gaps = 30/348 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA ++ ITGS GK+T  +++     +        G+    +     L  +  +  
Sbjct: 104 FLEHAKAPVVLITGSNGKSTVTKLVGEMAQASGLKVGVGGNLGTPM-----LDLLDDENQ 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L    R  I+ I  I+P H+  ++ +++  +AK  IF G  +  
Sbjct: 159 LYVIELSSFQL----ELVTDTRGAISAILNISPDHMDRYADLQQYHAAKHRIFRGASQ-- 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N  D+    L + +  L       FG ++  D           ++W+   L+    
Sbjct: 213 -VIFNRQDALTNPLLSVAVKLCN-----FGLNR-PDLANFGLLDEEGETWLAYGLKPLMR 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +      D+   +  L+ F    G   R          T 
Sbjct: 266 SAELALKGRHNIANALAALALGQAAGLDMAAMLTTLTRFT---GLSHRCEYVATVDGVTY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S   N  +  AA++   +         I + G   + G+        L + + L   
Sbjct: 323 IDDSKGTNIGATVAALNGFGE---DDRANLILIAGGQGK-GQNFTELKAPLGKFVKLLA- 377

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L G    ++ + L  +  +    ++       ++    GD+V++
Sbjct: 378 ----LFGEDAQSIAETLSGTTQIETLASLQAAVDCARAVAQPGDIVLL 421


>gi|145588401|ref|YP_001154998.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046807|gb|ABP33434.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 465

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 131/383 (34%), Gaps = 45/383 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++A+ G+ GKTTT  MLT  L          G     + +  T++    D  + + 
Sbjct: 104 YGRHVLAVAGTHGKTTTSAMLTWILEFNGYK---PGYLIGGVPLNFTVSARLGDSQYFVI 160

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  A++  +   H   F+ +  I +    +   +   G +
Sbjct: 161 EADEYDTAFFDKRSKFVHYRPRTALLNNLEFDHADIFADLAAIETQFHHLVRTVPGDGLL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N ++   E +  +        +  FG+     + L             V+  GK +  
Sbjct: 221 VVNGEEVALERVITRG---AWAPVERFGQDLENAWSLVSQASDG----FIVRQHGKEVAT 273

Query: 284 V-----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           V        +G H   N L  +   + +      + +AL+ F   +   +R         
Sbjct: 274 VAWAPDSGVMGRHNQLNALAAIAAANHIGISPKDSARALAEFKNVK---RRLETIGVANG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-S 397
            T+ D+ +  +P ++   +  L      G+ R +AVL    E    +    +  A++  S
Sbjct: 331 VTVYDD-FAHHPTAITTTVDGLR--RRVGKARILAVL----EPRSNTMKLGVMKAQLPGS 383

Query: 398 LYNISHVWLSGFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDV 446
           L     V+  G           L D L       +        +D L   +      GD 
Sbjct: 384 LMAADKVFAYGASTGKESLGWDLPDVLSPLNQTEAGKALAFNDLDALVNVVAQEARPGDH 443

Query: 447 VVVKSSNSCGFY----RLINLLL 465
           ++V  SN  GF     +++N +L
Sbjct: 444 ILVM-SNG-GFGGVHQKILNAIL 464


>gi|257784288|ref|YP_003179505.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
 gi|257472795|gb|ACV50914.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
          Length = 467

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 109/329 (33%), Gaps = 35/329 (10%)

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L         +G+    I   L+  +      + + EL    L      T  + PH+A+
Sbjct: 132 ILQYAGLDACAVGNIGFTITDQLSERKSNS---WFVAELSSFQLA----TTQKLHPHVAM 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  I P HL     +E  A+AK +IF  L+      ++  D F   + ++  A GI   +
Sbjct: 185 LLNITPDHLEWHGSLEAYAAAKEKIFANLDVNDLAIVSDLDEFCLAVSSRLEARGISVCH 244

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVS 304
                        +         + V+L GK ME+V     H  G H A N L       
Sbjct: 245 LAQTDPG-----TQNAAFVRNGALVVRLSGKEMELVATDALHIRGMHNALNALAAAACGL 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D+ +   AL  F P E    R            +++S   N  S++ +++      
Sbjct: 300 FLGIDIVSIRHALLDFMPLE---HRIEPVKTINGVLYVNDSKATNTDSVEKSLTSF---- 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
              +   I +LG   + G     F   ++   +     +    G       +AL      
Sbjct: 353 --PDKDIILLLGG-HDKGTELDKFAQKVSATCA-----YAICFGEAGPRFAEALRHVSGG 404

Query: 423 HVHYSET--MDGLFLFIQSSLVDGDVVVV 449
                E   +   F         G VV++
Sbjct: 405 RAEVVEEPHLREAFAHAVELARPGFVVLL 433


>gi|148642419|ref|YP_001272932.1| peptide ligase [Methanobrevibacter smithii ATCC 35061]
 gi|148551436|gb|ABQ86564.1| cell wall biosynthesis protein, MurD-like peptide ligase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 478

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 81/496 (16%), Positives = 156/496 (31%), Gaps = 76/496 (15%)

Query: 5   WTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFF--AIKGPHYDGHDF--- 56
               DL   I+G+ +G           G             F   A++G     H     
Sbjct: 1   MIIQDLASFIEGNIVGKDSFFDDEGFTGKFT----------FLNDAVEGDIVIRHKINGK 50

Query: 57  -ILHAVQKGAGLVVVNTDM---VASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATI 110
            +  A  K    ++  T           L+ P+  VD  ++  A        +    +  
Sbjct: 51  GVEIAAGKNLACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKN 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYAC----IGSYNNHIGVPLTLA-----RMPVDVD 161
           + ITG+ GK+TT  ++   L +              +N  I   ++       +    +D
Sbjct: 111 VIITGTNGKSTTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLD 170

Query: 162 FGIFELGMSH------LGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           + + E+          +    +L    V+P + VIT IA  H+   + I+E+     ++ 
Sbjct: 171 YLVIEVSEVQGWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVP 230

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G   LNYDD     L  K   L          SKN +                +
Sbjct: 231 NAIG-DGVTVLNYDDDLVMKLTPKHPFLCSMNNM---DSKNPNVYYDN----------GI 276

Query: 275 QLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +GK +          +H  QN+L  +     L  D++  ++ +  + P   R  +   
Sbjct: 277 FYEGKRILENKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLH- 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   LI + +  NP  +KA I+   ++    +     V       G      +++ 
Sbjct: 336 -----ENPLIVDDFAHNPDGIKATIAETRKLLAENQT-LYVVCSIRGSRGVEINKLNVEA 389

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----------MDGLFLFIQSSLV 442
                  NI  V  S   V+   + +       + E            D L   ++ +  
Sbjct: 390 LAESMDDNIKLVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYK 449

Query: 443 ---DGDVVVVKSSNSC 455
                D++++  +   
Sbjct: 450 CADANDIILLIGAQGM 465


>gi|86608391|ref|YP_477153.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556933|gb|ABD01890.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 898

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 126/383 (32%), Gaps = 52/383 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLAR 155
           ++  I+A+TG+ GKTTT  ++   L  I K      +   +I            P +   
Sbjct: 483 TRIPILAVTGTNGKTTTTRLIAHILKGIGKRVGFTTTDGVYIQNHQIAKGDMTGPHSARL 542

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R         I V+  +   HL   +   +E++A  K+ +
Sbjct: 543 VLRDPTVEVAVLETARGGILREGLGFPECDIGVVLNVTSDHLGLGDIETLEDMARVKSVL 602

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----E 268
            E + + G   LN DD     + A   A    T+  F  +       +           E
Sbjct: 603 VEAVHERGYAVLNADDGLVAAMAANVKA----TVAYFSMNPENPLIQKHIASGGIAAVYE 658

Query: 269 QSWMEVQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +  + +  +G          + +   G    M QN+L       +    +D    AL  F
Sbjct: 659 EGHISILKRGWKLRIEDVTKIPLTLSGKASFMIQNVLAATLAAFLHGVSIDDIRMALGTF 718

Query: 321 -HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R       G+  L+D  Y  NPA  +A  S L +       R+I V+G   
Sbjct: 719 TSSVAQTPGRLNLFDVGGYQVLVD--YAHNPAGYEAIQSTLERWDCQ---RKIGVIGGP- 772

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPRSIHV-HYSE 428
             G+   S   +L  VL+        +           G     ++    +        E
Sbjct: 773 --GDRRNSDLRELG-VLAARMFDRAIVKEDDDRRGREPGEVAALIRQGWEQEKAGDRLQE 829

Query: 429 TMDG--LFLFIQSSLVDGDVVVV 449
            +D              GD+VV+
Sbjct: 830 ILDEATAIETALEKAEPGDLVVI 852


>gi|261337518|ref|ZP_05965402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277918|gb|EFA23772.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
          Length = 474

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 23/306 (7%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +DG D+   ++       V        + +    V  + +V  A        R    A  
Sbjct: 46  FDGIDW--KSMDALCVSPVFPPRTPFILAAQEAQVPVLSEVELAWQLRVPNTRTGKPAPW 103

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GKT+T EM++  L++   T   +G+    IG  L+LA +  + D    EL   
Sbjct: 104 IGITGTNGKTSTTEMVSTMLTACGYTAPAVGN----IGNALSLAAVDPNNDVLCVELSSF 159

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      T  +    A IT I   HL    GIE  A+ K++++        I  N  D+
Sbjct: 160 QL----HFTDSMALDCAAITNIGADHLDWHGGIERYAADKSKVYAH--AQQAIVYNAQDA 213

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWK--QCSEQSWMEVQLQGKSMEV 283
               L   + A   +  ++    ++     AD  +        S+ +   +         
Sbjct: 214 RVRDLAFAADASCARIGFTLDVPQDGMIGVADGWIVDRAGLMGSDPATPVMVAPVADFTH 273

Query: 284 VHHGIGY---HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
           +    G    H+  + +  L  V    AD   A++AL  F P   R +   +   ++G  
Sbjct: 274 LREPDGTVYPHLLADAMTALAWVLSFGADAAPALEALKTFKPGGHRIECVAQYTSDEGAI 333

Query: 340 TLIDES 345
             ID+S
Sbjct: 334 RFIDDS 339


>gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
          Length = 488

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 114/365 (31%), Gaps = 39/365 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   + A  +A+TG+ GKTTT +ML   L +       +G+    I   +     P
Sbjct: 122 AWRLRDPDNAAPWLAVTGTNGKTTTVQMLDNILRTAGLRSVAVGNVGLPIVEAVM---DP 178

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D    EL    L    + + +     AV+  IA  HL  +  +EE A+ K  ++EG+
Sbjct: 179 EPYDVFAVELSSFQL---HYTSSMAA-EAAVVLNIAEDHLDWYPSMEEYAADKGRVYEGV 234

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           E+      N  D     L  ++  +       F     A  Q+   +          + Q
Sbjct: 235 ER--ACVYNVADEATMHLVEEADVVEGARAIGFTLGTPAVGQVGVVEDILVDRAFIEERQ 292

Query: 278 GKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             + E+           H  QN L    +              L  F      G R    
Sbjct: 293 TSAAELCQISDLASSAPHYVQNALAAAALARAHGVSQAAVRDGLKSF---RPDGHRIEVV 349

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G  T +D+S   NP + +A++     +     G     L       +L  S H  L 
Sbjct: 350 AEVGGVTWVDDSKATNPHAAQASLQAYDPVIWIAGG-----LAKGARFDDLVASIHERL- 403

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMD------GLFLFIQSSLVDG 444
                     V L G     +  AL      + +   +  D             +    G
Sbjct: 404 --------RAVILIGQDRDVIASALAAHAGDLEIVELDDPDGEAALAEAVEIAAALAKPG 455

Query: 445 DVVVV 449
           D V++
Sbjct: 456 DTVLL 460


>gi|167614194|gb|ABZ89698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 362

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 100/287 (34%), Gaps = 12/287 (4%)

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            T T  M T+    +K  +    +    I +  +   M V+    +  + +S  G ++  
Sbjct: 1   STKTATMGTLGNGFLKSLHDTKNTTPEAIYIQ-SFLYMAVEKKTKLVTMEVSSHGLVQNR 59

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +  HI ++T I+  HL     +E   SAK   F    K   + LN +D   ++   +
Sbjct: 60  VKEIPFHIGILTNISQDHLDFHGNMENYKSAKWSFFSK-HKIKKVILNANDKCGQIWLRR 118

Query: 239 SHALGI--KTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     TI    + K A         +     + +  +    S  +  + IG   A 
Sbjct: 119 LFNVYTIAVTIKDSTQKKYATKWINATHLQYDKNGTNITFESSWGSGNIKSYLIGDFNAI 178

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L++L  +  L   +   I       P  G   R     +      I + Y   P ++K
Sbjct: 179 NLLLSLACLLELGYKIYDLINTSYKIQPING---RMETVFHNNKLVFIID-YAHTPDALK 234

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            A++ +     + +     + G      +  +     +AE ++   I
Sbjct: 235 KALNSIRL--HYNQSYIWCIFGCGGNRDKKKRPLMGSIAEKIANKVI 279


>gi|83648438|ref|YP_436873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Hahella chejuensis KCTC 2396]
 gi|83636481|gb|ABC32448.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Hahella chejuensis KCTC 2396]
          Length = 445

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 118/348 (33%), Gaps = 29/348 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG  +    V   L     D  F + E  
Sbjct: 93  VLAVAGTHGKTTTTSMLAWVLEQAGLAPGFLIGGVSQGFDVSARLG----DTSFFVIEAD 148

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  RP   +I  +   H   F  + +I      +   + + G +   
Sbjct: 149 EYDSAFFDKRSKFIHYRPRTLIINNMEFDHADIFRDLGDIQRQFHHVVRTVPRQGLVITP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                 E   A       +   +F  S   AD +     +  + S  EV L G+S  +V 
Sbjct: 209 TQTPAVEETLAMGLWSPRQ---TFSLSDAQADIRAECLAE--DGSRFEVFLNGESCGIVE 263

Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            G+ G H  QN L TL     +      AI ALS F   +   +R      +      D+
Sbjct: 264 WGMSGAHNVQNALATLLAARHIGIRPQNAIPALSAFPGVK---RRLEKLGERNGVAAYDD 320

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
            +  +P +++  +  L      G+    A++    E    +     H D   + S     
Sbjct: 321 -FAHHPTAIQLTLEGLR--KRVGDAPIWAII----EPRSNTMKMGVHRDTL-LASAELAD 372

Query: 403 HVWLSGFHV-LALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVV 448
           HV  +       L DA+  +   H   + +D +   +        +V+
Sbjct: 373 HVIWANLDGYEWLDDAVRNAPPKHQIVDKVDEITRLLADVKGPAHIVL 420


>gi|269959054|ref|YP_003328843.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma centrale
           str. Israel]
 gi|269848885|gb|ACZ49529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma centrale
           str. Israel]
          Length = 456

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 119/350 (34%), Gaps = 43/350 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +I +TG+ GK+TT E++   L+         G+             +P   +  
Sbjct: 107 RSQPARLIGVTGTNGKSTTVELIGWILNCAGIDSETGGNVGGKGA-----LSLPQGKEAY 161

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L H     I V+  IAP HL  +SG+ +  SAK +I   L+ +  +
Sbjct: 162 VLELSSYQL----ELMHEASLDIGVVLNIAPDHLDVYSGMADYISAKEKI---LKFSNLL 214

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD        K     +  +  F   K  D   +       + +   ++ G     
Sbjct: 215 VANCDDRNVTACLCK----NVGQVMEFSCEKRLD---KGVSVLDGRVYFHGKVMGI---G 264

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                    A+N+     +   L    +  + ++  F    G   R +        T ++
Sbjct: 265 DLKIDSASNAENIAAAYTVARSLGVPDEVILASIREF---PGLRHRNQIVAEIANVTFVN 321

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N AS+  A+     +     G+              S+   I+    L   +I  
Sbjct: 322 DSKATNAASVGKALMCRKNVYWIAGGK--------------SKDGGIESLLGLYANHIRK 367

Query: 404 VWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDG--DVVVV 449
            +L G        +L R+   HV   +  D +      ++ DG    V++
Sbjct: 368 AFLVGEAANEFAVSLQRAQVEHVTCHDIYDAVRAAFVEAVADGVKATVLL 417


>gi|326568323|gb|EGE18403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC7]
          Length = 469

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 125/353 (35%), Gaps = 37/353 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +  IPV  V DV   ++ L      + +   +IAITGS  K+T   ++         
Sbjct: 80  AAKAQGIPV--VSDVQLFIDTLKARDLAQATNTPVIAITGSNAKSTVTTLVGEMAKRAGM 137

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+        LT+  M    D  + EL    L  I  L        A I  ++  
Sbjct: 138 IVGVGGNIGTPALELLTIQNM----DLVVLELSSFQLEHISNLAA----QGATILNLSAD 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYSF 250
           HL    G+ +  + K  IFE  +   T  +  DD+         L+  +    I T  S 
Sbjct: 190 HLDRHDGMADYLAQKLRIFEHCQ---TAIICQDDAGLAKQCLTTLQRIAPNHTIITTDSS 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTA 308
              + ADF L       +   M +  Q   +  +H     G H   N L  L + +    
Sbjct: 247 LTHQTADFYLFD-----DGDGMALYHQKDKLLPIHQLKIKGKHNLLNALSALALGTAANL 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F   +G   R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 302 PMDAMLDTLKTF---KGLPHRCEYIDDIDGKAYFNDSKGTNIGSTMAAIDGLGTV--YGT 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                +LG + +  + S     +L+  +  + +  V+L G     ++  L + 
Sbjct: 357 SSLALILGGLGKGQDFS-----ELSAYVMQW-VDSVYLIGQDAPMIEQDLLKG 403


>gi|295113830|emb|CBL32467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus sp.
           7L76]
          Length = 456

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I       +P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----QPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTADDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|167564145|ref|ZP_02357061.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia oklahomensis EO147]
          Length = 458

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 126/377 (33%), Gaps = 38/377 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 93  VLAVAGTHGKTTTSSMLAWILEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 148

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 149 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E + ++        +  FG                 E     V  + + +  V 
Sbjct: 209 GREDALERVLSRG---CWSDVERFGVDGGWQALPAEDGVPVDE--RFAVYWRSERVGAVD 263

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 264 WQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVK---RRMEVRGSVDGVTVYDD 320

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I+ L         R +AVL      M  +G +            SL +
Sbjct: 321 -FAHHPTAIETTIAGLRARIGGENSRILAVLEPRSNTMK-LGTMKAQL------PASLAD 372

Query: 401 ISHVWLSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G          +L DAL P     H  + +  L   + ++   GD V+V  SN
Sbjct: 373 ADLVFGYGAPTGRDALGWSLPDALAPLGDKAHAFDDLHALVKAVTAAARPGDHVLVM-SN 431

Query: 454 SCGFYRLINLLLEEFPA 470
             GF  +   LL+   A
Sbjct: 432 G-GFGGVHQKLLDALSA 447


>gi|18033116|gb|AAL56990.1|AF329282_2 cyanophycin synthetase [Synechococcus sp. MA19]
          Length = 903

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 113/336 (33%), Gaps = 38/336 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V  A+  +   +   S+  I++I G+ GKTTT  +L        K      +   +IG
Sbjct: 466 RNVAAAVLDMLFPSEQSSRIPILSIIGTNGKTTTTRLLAHIFKQTGKVVGYTTTDGTYIG 525

Query: 149 VPLTLARMPVDVDFGIF-------ELGMSHLGEIRFLTHLVRPH---IAVITTIAPAHLS 198
             L  A                  E+ +        L   +  H   + V+  +A  HL 
Sbjct: 526 DFLVEAGDNTGPQSAQLILQDPTVEVAVLETARGGILRSGLAFHAANVGVVLNVAADHLG 585

Query: 199 --NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             +   I+++A  K+ + E +   G   LN DD     +  ++ A     +  F  + ++
Sbjct: 586 IGDIDTIDQLAHLKSVVAEAVFPDGYAILNADDPRVAAMAERTKA----NVGYFTMNPDS 641

Query: 257 DFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +      ++    +  E                + +++ +   G    M  N L      
Sbjct: 642 ELVRNHIQKGGVAAVYENGFLSILKGDWTHRIEKAENIPLTMGGRAPFMIANALAASLAA 701

Query: 304 SILTADVDTAIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +    ++     LS F         R        F  L+D  Y  NP S +A    +  
Sbjct: 702 FVQNVSIEQIRAGLSTFRASFSQTPGRMNLFNLGSFHALVD--YAHNPHSYEALGCFVRS 759

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +    G+RI V+G     G+      I L ++ + 
Sbjct: 760 WT---NGKRIGVVGGP---GDRRDQDFITLGKLAAE 789


>gi|167469961|ref|ZP_02334665.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis FV-1]
          Length = 423

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 95/270 (35%), Gaps = 20/270 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L +        IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTAGMLAWILEACGYEPGFVIGGVPGNFDVSARLGNSP----FFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   ++  +   H   F  I+ I      +   +   G I L 
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +D+  + + A       + +      +   +  RK    ++ S  EV L    + EV  
Sbjct: 221 DNDNHLKQVMAMGCWSEQELV-----GETGSWFARKV--STDASVYEVLLDNNVVGEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +AL  F       +R          T+ D+ 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINAS---RRLELRGEAHGVTVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +  +P ++ A ++ L      G  R +AVL
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVL 358


>gi|261868564|ref|YP_003256486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413896|gb|ACX83267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 457

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 142/410 (34%), Gaps = 32/410 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  I     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 67  MVIVGNAMKRGNPCIEYMLANNIPYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 126

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L + P    + + E            +  V   P 
Sbjct: 127 ILEQNGLQPGFLIGGIAGNFGISARLGQSP----YFVIEADEYDTAFFDKRSKFVHYNPR 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   H   F  +  I      +   +   G I     +   +   A       +
Sbjct: 183 ILIINNIGFDHADIFDDLNAIQRQFHHMIRTIPNNGRILSFAGEESVQQTLAMGCWSECQ 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            +      K+ ++   + K   + +   V  +G+ +  VH + +G H  +N LM +   +
Sbjct: 243 YV-----GKDQEWYAERIKH--DCTEFAVYHKGEKITEVHWNIVGEHNMRNGLMAIAAAN 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A   L  F   +   +R     N    T+ D+ +  +P  ++A ++ L    
Sbjct: 296 HAGVSIENACATLGSFINAK---RRLEVKGNVHGITVYDD-FAHHPTEIQATLTALRD-K 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
                R +AVL    E    +     H D +A  L L +   ++        + D A   
Sbjct: 351 VGQNARILAVL----EPRSNTMKMGVHKDEIAPALKLADAVFLFQPETIPWKVADIAAQL 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEE 467
           +   + S+ +D     I +     D ++V    S       +L+  L ++
Sbjct: 407 TQPAYDSDNLDTFVDLIVAETKPTDHILVMSNGSFGGIHQ-KLLEALQKK 455


>gi|187250460|ref|YP_001874942.1| putative UDP-N-acetylmuramate-alanine ligase [Elusimicrobium
           minutum Pei191]
 gi|186970620|gb|ACC97605.1| Putative UDP-N-acetylmuramate-alanine ligase [Elusimicrobium
           minutum Pei191]
          Length = 475

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 121/379 (31%), Gaps = 55/379 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGV 149
             AL    VA     +   IAI+G+ GK+TT  +L   L  + +  +     +       
Sbjct: 95  RAALLATHVA-----QNRTIAISGTSGKSTTTAILYDILVEADLSPSVITGATLLALQEK 149

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      D  I E   S    + +      P I V   I   H        +I   
Sbjct: 150 GFYGNVYRGAGDILIIEADESDGSLVNY-----SPEIGVCLNIQKDHKE-----LDILKG 199

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
               F    K      N D+   +           K   +FG  +  D +          
Sbjct: 200 FFNTFSSQCKQ--FLYNADEEGLKE--------QFKGFKTFGLEEG-DTRAENILMDGFG 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S   +      +++  +  G H  +N +  + +   L   ++    AL  F   +G  +R
Sbjct: 249 STFFID----GVKMHINTPGEHNIKNAVAAIAVAKELGVPLNVIAAALEKF---KGVYRR 301

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQ 386
           +          +ID+ +  NP  +KAA+           G+R+           +  L+ 
Sbjct: 302 FNSVGVFNKIEVIDD-FAHNPHKIKAAVKA-----TQLRGKRVLAYFQPHSFASIQLLTS 355

Query: 387 SFHIDLAEVLSLYN---ISHVWLSG------FHVLALKDALPRSI--HVHYSETMDGLFL 435
            F  ++   L   +   ++  +  G           +   L +S   +V ++   + +  
Sbjct: 356 EFIENICATLRPQDKLWMTEAYYPGGTIPQNVTAETIVKGLLKSGCANVKFNSCREEIAK 415

Query: 436 FIQSSLVDGDVVVVKSSNS 454
            I +   +GD+++V  +  
Sbjct: 416 EIAAEAKEGDIIIVMGARD 434


>gi|156741081|ref|YP_001431210.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus castenholzii DSM
           13941]
 gi|189029028|sp|A7NI92|MURC_ROSCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156232409|gb|ABU57192.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus castenholzii DSM
           13941]
          Length = 476

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 144/429 (33%), Gaps = 54/429 (12%)

Query: 53  GHD--FILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           GH+  F+  A +  A   V +  +         IPV    D    L +     R      
Sbjct: 51  GHEPAFVGDADRLVATSAVQDEHIELVEARKRGIPVLRRAD----LWREWSHGRQ----- 101

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ++ + L+         IG     +GV    AR        + E  
Sbjct: 102 VVAVAGTHGKTTTTALIALMLTRAGIAPGFLIGGETPDLGVN---ARWGNPAAPLVVEA- 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                E       + P IA+IT +   H+  +   +E  +A       +     + +  D
Sbjct: 158 ----DEYDRTFLALTPDIAIITNVEWEHVDIYPSPDEYEAAFRTFARQVAHPQRLIVCGD 213

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNA------DFQLRKWKQCSEQSWMEV-----QLQ 277
           ++    +     A       +  ++  +      D+     +     +  ++     +  
Sbjct: 214 NAGARRVVGHPDAQQYGIEEAIARNPASCRLALMDWMAANVRYDGSMTHFDLWRYDRRTC 273

Query: 278 GKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           G  +E       +G H  QN L  +   + L  D        +      G  +R+     
Sbjct: 274 GTRLEGMYTMRLVGDHNVQNALAAIAAATTLGIDRTAI---GAALAEYRGARRRFDIKGE 330

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF------- 388
               T+ID+ Y  +P  ++A ++      P     RI V     +    S+++       
Sbjct: 331 VNGITVIDD-YAHHPTEVRATLAAARARFPQH---RIVV---YLQPHTFSRTYAMLDNWT 383

Query: 389 HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD 445
           H  D A+++ + ++     +G    A +    R  H  V     +      I + L  GD
Sbjct: 384 HAFDAADIVRIGDVYPARETGEPRAAARALAGRIAHPDVEVVGDVATATATITALLQPGD 443

Query: 446 VVVVKSSNS 454
           +++   +  
Sbjct: 444 LLLTLGAGD 452


>gi|300722057|ref|YP_003711337.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628554|emb|CBJ89126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 441

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 116/347 (33%), Gaps = 40/347 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A I+AITGS GK+T   ++              G+          L  +       
Sbjct: 106 REATAPIVAITGSNGKSTVTTLVGEMAKEAGWQVGVGGNIGVP-----ALELLKKSCQLY 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGT 222
           + EL    L      T+ ++   A +  +   H+     G+ +  +AK  I++  +    
Sbjct: 161 VLELSSFQL----ETTYSLKAAAATVLNVTEDHMVRYPEGLPQYRAAKLRIYDQAKA--- 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D                   SFG           ++  SE   + V        
Sbjct: 214 CIVNAQDQL-----TLPAGGEESCYISFGVDSG------DYQLDSEHQQLVVNQCPVLAT 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  L +   +    + +++A        G   R++    +     I
Sbjct: 263 RDMQLAGQHNYTNGLAALALADAVGIPREASLQA---LRTYSGLDHRFQVVHMRDGIRWI 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S +AA+S L       EG    ++G   +  + +      L   +S  NI 
Sbjct: 320 NDSKATNVGSTQAALSGLK-----VEGTLYLLVGGDGKSADFTP-----LKPDISGNNI- 368

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  G     L    P       +ETM+     I S LV GD+V++
Sbjct: 369 RLYCFGRDGDQLAQLRPE--IAVLTETMEQAMREIASKLVAGDMVLL 413


>gi|312795059|ref|YP_004027981.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           rhizoxinica HKI 454]
 gi|312166834|emb|CBW73837.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
           [Burkholderia rhizoxinica HKI 454]
          Length = 505

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 156/456 (34%), Gaps = 65/456 (14%)

Query: 33  DSRSIAPQEAFFAIKG--PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD- 89
           D+R+  P  + +A  G    + G  F    +  G  LV ++   ++ +G+    + G   
Sbjct: 41  DTRAAPPNLSQWAALGIDAEFVGGAFSPALLDGGIELVAIS-PGLSPLGADLAALIGAAR 99

Query: 90  ----DVLGAL----NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               DV G L      L   A    +  ++A+TG+ GKTTT  +  +      ++ A  G
Sbjct: 100 ERGIDVWGELEFFAQALRALATDGYQPKVLAVTGTNGKTTTTALTGLLCERAGRSVAVAG 159

Query: 142 SYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           + +  +   L  A       D  + EL    L      +H   P  AVI  I   HL   
Sbjct: 160 NISPAMLDKLAEAIDAAKLPDVWVLELSSFQL----ETSHTFEPDAAVILNITQDHLDWH 215

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNAD 257
            G++  A+AK  IF GL       LN DD+   ++        I   ++FG +    + D
Sbjct: 216 GGLDAYAAAKGRIF-GLRT--LRVLNRDDA--RVMACVPAGDAIAPYWTFGLNVPQNDGD 270

Query: 258 F-----------------------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +                       +    ++ S     ++ L+           G H A 
Sbjct: 271 YGIQRDGGIAWLLQAHERNDASEQRAMHRRRKSGGLAPDIALKRLMPVDALRIRGLHNAT 330

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  L +   +   +   +          G   R     +      ID+S   N  +  
Sbjct: 331 NAMAALALAQSIGLPLAALLHG---LREYRGEPHRVEWIGSIDGVDYIDDSKGTNVGATV 387

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+  L+Q       R + + G   +  + +      +A          V L G    AL
Sbjct: 388 AALDGLAQ-------RIVLIAGGDGKGQDFAP-LAAPVARWCRA-----VMLIGRDAPAL 434

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + AL    + +    ++        +    GD V++
Sbjct: 435 RAALADTGVELALHPSLQAATRAAAAVAQPGDAVLL 470


>gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 139/434 (32%), Gaps = 50/434 (11%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++A    +  H I        + I+ D+R +         KG  +   +++    +
Sbjct: 18  LREIIRADRWTLDAHDIEGA-DTAFSAITYDTRDVREGTL-LCCKG-RFKA-EYLHDIDE 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +G    V +TD  A  G+   P   V+D   A++ L+     R + + T++ ITG+ GKT
Sbjct: 74  RGLAAYVADTDFSAETGA---PGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGTKGKT 130

Query: 121 TTKEMLTIALSS----------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           TT       L++                   TY               + R   D     
Sbjct: 131 TTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKY 190

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
             + +S         + +   +A    I+P H+S       E+    K +I      +  
Sbjct: 191 LVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRN---SRA 247

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGK--------SKNADFQLRKWKQCSEQSWMEV 274
           + L       +LL+  +   G+  + +F          S  AD         +E S   +
Sbjct: 248 LVLGAASDHADLLRQDAADAGV-PVTTFELLDGQSPAGSDAADVTAS--PANAEHSAYRI 304

Query: 275 QLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              G  + E      G     N    L I      D+     A     P    G+  +  
Sbjct: 305 AADGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFH 364

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q     I + Y  N AS+ A +  + +       R   V G     G  +     ++ 
Sbjct: 365 DPQSNTLAIVD-YAHNYASVTALLDFVDERFGSQHPRITLVTGS---AGNKAYDRRKEIV 420

Query: 394 EVLSLYNISHVWLS 407
           E       S ++ +
Sbjct: 421 EAAQHRIDSFIFTA 434


>gi|229592818|ref|YP_002874937.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-m es
           o-diaminopimelate ligase [Pseudomonas fluorescens SBW25]
 gi|229364684|emb|CAY52629.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-m es
           o-diaminopimelate ligase [Pseudomonas fluorescens SBW25]
          Length = 449

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 124/370 (33%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGDTPFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +   + +        ++T           +Q++      + S  EV   G++  +V   
Sbjct: 222 TEPALQRVIEMGCWTPVQT-----TGAGGQWQVKLL--SEDGSKFEVLFDGEAQGIVDWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L+TL     +       I ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGQHNVANALVTLAAARHVGVVPSMGIAALSAFKSVK---RRMEKVADVNGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IA++    E    S     H D     S+ +    
Sbjct: 331 AHHPTAIATTLDGLR--KRVGDAPIIAII----EPRSNSMKLGAHRD-GLPESVNDADEA 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ +  +      ++     ++++G+   ++     G  VVV  SN  GF  
Sbjct: 384 VWYAPANLGWDLPGIAALC--TVPSTVCDSIEGIIEHVRQQAKPGTHVVVM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALK 449


>gi|254993143|ref|ZP_05275333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-064]
          Length = 416

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +A       +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  
Sbjct: 155 VAENATSDQYISMELSSFQLMGVETF----KPHISVITNIYEAHLDYHTDRSEYVQAKWH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +       + +N+D    + L  ++ A  I    +    + +  Q        E    
Sbjct: 211 IQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGA 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                           G H  +N+L ++ +   L    +  +  L  F   E    R + 
Sbjct: 271 R---------DNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVE---HRTQF 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +        ++S   N  + ++A+              + +L    + G          
Sbjct: 319 VVEWQGRKFYNDSKATNILATQSALKGFKN--------PVVLLAGGLDRGNSFDEL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLF 434
             +    N+  + + G     +        I VHY + ++   
Sbjct: 367 --LPFFKNVKALIVFGETADKIGRVGKIAGIDVHYVDNVEAAV 407


>gi|83814772|ref|YP_444701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
 gi|122063258|sp|Q2S530|MURD_SALRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83756166|gb|ABC44279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
          Length = 460

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 116/354 (32%), Gaps = 39/354 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            A I+AITG+ GKTTT  +      +     + +     G+        +         D
Sbjct: 107 DAPIVAITGTNGKTTTTSLTGHVFRTAFADTLGREAIVAGNIGYPFSDYVLE---TEPTD 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
             + E+    L  +       RP ++V+  I P HL  +    E  A AK  IF    + 
Sbjct: 164 VVVLEVSSFQLDHVETF----RPRVSVLLNITPDHLGRYDHDFEAYAQAKHNIFRNQGEG 219

Query: 221 GTIFLNYDDSFFE---LLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQL 276
             +  N DD          A    +    I   G  +  A F+  +    ++     +  
Sbjct: 220 DVVVYNRDDDDVRNAAEEAAAEQGVRPMAITREGVPAAGAGFRDGRIVLRTDDEDDSLMP 279

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           Q +         G H   N L       ++  + D   ++LS F        R       
Sbjct: 280 QDE-----LALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGFEGVP---HRLEEVHTV 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N  ++  A+          +   + + G     G    + + DL + L
Sbjct: 332 DDVLYVNDSKATNVNAVWYALESF-------DRPIVLIAG-----GRDKGNDYTDL-KPL 378

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
               +  V   G     ++  L      H  +ETM+      Q +   GDVV++
Sbjct: 379 VRDQVRAVVALGESAEKVERELGGEAPDHSRAETMEDALTQAQRAAQPGDVVLL 432


>gi|158834102|gb|ABW81856.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 284

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 19/263 (7%)

Query: 138 ACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A   +  + I V  TL   +    +F   E+     G ++     +    AV T ++  H
Sbjct: 5   ATENTTGSAIDVQKTLNHFVMQGANFAAMEVSSH--GLVQHRVTALPFTAAVFTNLSRDH 62

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    +AK ++F          +N DD          H L      S      A
Sbjct: 63  LDYHGDMARYEAAKWQLFS-THHAKEKIINADDQVGRRWL---HQLPHAVAVSMEGKIPA 118

Query: 257 DFQLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           D++ R          ++   +          +V   +G     N+LM L  +  L   + 
Sbjct: 119 DWKGRWLETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLK 178

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  +S      G   R          T+I + Y   P +++ A   L+    H +G+ 
Sbjct: 179 KLVATVSQLQAVCG---RMEVFNALDRPTVIVD-YAHTPDALEKA---LAAARLHCKGQL 231

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
             V G   +  +  ++    +AE
Sbjct: 232 WCVFGCGGDRDKGKRALMGGIAE 254


>gi|332297816|ref|YP_004439738.1| UDP-N-acetylmuramate/alanine ligase [Treponema brennaborense DSM
           12168]
 gi|332180919|gb|AEE16607.1| UDP-N-acetylmuramate/alanine ligase [Treponema brennaborense DSM
           12168]
          Length = 505

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 123/435 (28%), Gaps = 63/435 (14%)

Query: 84  PVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P     D  G  AL       +L + A    I G  GKTTT  +    L  +      + 
Sbjct: 88  PDLAEADRRGVPALLYSEALGQLSAAAYSCGIAGVHGKTTTTGLAGTILHELALPAQTLA 147

Query: 142 SYNNHIGVPLT---LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                   P        +     + + E        + F      P   ++T++   H  
Sbjct: 148 GSVIASFGPAGGDGSCTLTDGHTYFVAETCEYQRHFMAF-----HPQKIILTSVESDHQD 202

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNAD 257
            +   E I  A  E    L   G +    DD+          +L    + + +G+     
Sbjct: 203 YYPTYESIRDAFVEYALKLPNGGELIYCADDAGAAETARSVSSLRPDILLTPYGEQAAGP 262

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL--------TAD 309
           F +        + +    L G          G H+ +N      +   L           
Sbjct: 263 FCVTFGDVRDGRQYFS--LAGFDRSFYLCIPGRHLVRNAAAAAALACGLLKEQLRSEGVS 320

Query: 310 VDT----------AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            +           A K  + F    G  +R       G    ID+ Y  +P +++   + 
Sbjct: 321 AEATPAHVFSARTAEKLAAAFAGFRGGRRRSEIIGTAGNVVFIDD-YGHHPTAVR---TT 376

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---SGFHVLALKD 416
           L        GR+  V+  M      + +   + A+         V L    G     + +
Sbjct: 377 LDGYRAFYPGRK-LVVDFMSHTYTRTAALLDEFAQCFG--AADEVILHKIYGSARENVSE 433

Query: 417 -------ALPRSIHVH-----YSETMDGLFLFIQSSL-------VDGDVVVVKSSNSCGF 457
                     R+   H     Y+E MD     +   L         G V V   +     
Sbjct: 434 TGITGETLFGRTKRFHANVRYYAEIMDA-HDDLYRELSSPDPAYPAGTVFVTMGAGDN-- 490

Query: 458 YRLINLLLEEFPAIQ 472
           +++   L +E   I+
Sbjct: 491 WKIGKRLYDELKNIK 505


>gi|197123867|ref|YP_002135818.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. K]
 gi|196173716|gb|ACG74689.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. K]
          Length = 474

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 114/357 (31%), Gaps = 35/357 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             + + G+ GKTTT  M+   L    +  +  +G           L   P      + E 
Sbjct: 112 HGVVVVGTHGKTTTSAMMGFVLHHAGRDPSFLVGGVTRDFDSNFRLGSGP----HFVVEG 167

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                         +  RP  A+ T+    H   +       SA     + L   G +  
Sbjct: 168 DEYDTAYFDKGPKFLHYRPRTAIFTSCELDHADIYRDEAHYESAFERFADLLPPDGFLAA 227

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
                    + A++       I ++G     AD++ R      + +   +  +G  + EV
Sbjct: 228 CAAYESVRRISARARC----RIETYGVDVAGADWEARGLSLGPDGARFTLVRRGAPLAEV 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L      + L          L  FH   G  +R       G  T+ID
Sbjct: 284 HLPVGGAHNVENALGVAAAATALGLSPAEIAAGLGAFH---GVRRRQEVRGTAGGVTVID 340

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNIS 402
           + +  +P   +A    L+ +     G R+    +        ++ H  D ++  +    +
Sbjct: 341 D-FAHHP---RAVRKTLAAVRGSFPGARMLAAFE-PRSNTSRRNLHQADYSDPATWSGAA 395

Query: 403 HVWL--------SGFHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDV 446
            V++                 DA+ R++  H       + +D L   I +    GDV
Sbjct: 396 EVFVLRPAPTDRVPEAERLDVDAVVRALAAHGLPARVFDAVDPLVEAIAADARPGDV 452


>gi|284040361|ref|YP_003390291.1| Mur ligase middle domain protein [Spirosoma linguale DSM 74]
 gi|283819654|gb|ADB41492.1| Mur ligase middle domain protein [Spirosoma linguale DSM 74]
          Length = 453

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 142/428 (33%), Gaps = 52/428 (12%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              +  G   V+V  +       L   V  ++  L   +      +   +   I I GS 
Sbjct: 58  PEKIHSGLTAVIVGMNAHKENPEL---VKALELGLPIYSYPEFMYQQSQQKQRIVIAGSH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT   M+   L    + +  +      I    T+A++  D    I E        I  
Sbjct: 115 GKTTITAMILHVLKFHNRNFDYL--VGEQIDGFETMAKLTPDAPVIILEGDEYPSSPIDA 172

Query: 178 LTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               +  +PHIA+I+ IA  H++ +   +E   A   + E + K G +  +  D   +++
Sbjct: 173 QPKFLHYQPHIALISGIAWDHVNIYPTWDEYVDAFELLAEAMPKAGILIFDESDDMLDVI 232

Query: 236 KAKSHALGIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                          G+ + AD      L       E   + V  +G  +       G H
Sbjct: 233 ---------------GQKERADITKIPYLPHPATTVEGKTILVTKKGARVP--VQVFGQH 275

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N+   + +   +    +   +AL  F P      R      +G   L  + +  +PA
Sbjct: 276 NLKNIAGAMTVCDRIGITEEQFYEALPTFKPVA---MRLEKVAEKGGRVLYRD-FAHSPA 331

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEVLSLYNISHVWLS- 407
            ++A    +     +   + +AV+    E+   S   ++F       L   ++  V+   
Sbjct: 332 KVEATTEAVKH--QYTSRKVVAVV----ELSTFSSLNKAFLDQYEGTLDAADVGVVYFDE 385

Query: 408 -----GFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS---NSCGF 457
                    ++  D L       +H     + L  F+        V ++ SS        
Sbjct: 386 NASDRNPEAISTTDVLNAFNKPGLHVFNKPEELQNFLIDQREAATVFLLMSSSQFGGLAM 445

Query: 458 YRLINLLL 465
             L + LL
Sbjct: 446 DALADKLL 453


>gi|326566289|gb|EGE16441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 103P14B1]
 gi|326574823|gb|EGE24753.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 101P30B1]
          Length = 468

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 124/353 (35%), Gaps = 35/353 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +  IPV    DV   ++ L      + +   IIAITGS  K+T   ++         
Sbjct: 80  AAKAQGIPVIS--DVQLFIDTLKARDLTQATNTPIIAITGSNAKSTVTTLVGEMAKHAGM 137

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+        LT+  M    D  + EL    L  I  L        A I  ++  
Sbjct: 138 IVGVGGNIGTPALELLTIQNM----DLVVLELSSFQLEHISNLAA----QGATILNLSAD 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYSF 250
           HL    G+ +  + K  IFE  +   T  +  DD+         L + +    I T  S 
Sbjct: 190 HLDRHDGMVDYLAQKLRIFENCQ---TAIICQDDANLAKQCLTTLTSVAPNHTIITTNSL 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTA 308
              + ADF L       +   M +  Q   +  +H     G H   N L  L + +    
Sbjct: 247 LSHQTADFYLFD---DGDGDGMALYHQKNKLLPIHQLKIKGKHNLLNALSALALGTAANL 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F   +G   R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 304 PMDAMLDTLKTF---KGLPHRCEYIDDIDSKAYFNDSKGTNIGSTIAAIDGLGTV--YGI 358

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                +LG + +  + S     +L+  +  + +  V+L G     ++  L + 
Sbjct: 359 SSLALILGGLGKGQDFS-----ELSAYVMQW-VDSVYLIGQDAPIIEQDLLKG 405


>gi|218886060|ref|YP_002435381.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226711908|sp|B8DP81|MURD_DESVM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218757014|gb|ACL07913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 114/364 (31%), Gaps = 74/364 (20%)

Query: 50  HYDG--HDFILHAVQKGA-------------GLVVVNTDMVASIGSLSIPVFGVDDVLGA 94
           + DG   DF+  A + G              G   V      ++  L   +    D    
Sbjct: 46  NADGVPADFVRWAAEAGVEIATGDHAPTQFEGARAVVPSPGMAVSKLRPLLAQGPDAPEI 105

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTL 153
           + ++ +A R      ++A+TG+ GKTTT  +    L +   +    G+    +    L++
Sbjct: 106 MAEMELAWRQLDGEPVLAVTGTSGKTTTVSLCAAMLRAQGLSVFLGGNIGTPLSEYVLSV 165

Query: 154 ARMPVD----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           A    D     D  + E+    L          RP +A++  I+  HL   + + E   A
Sbjct: 166 AHGGADGQGRADVLVIEISSFQL----QACTTFRPRVAMLLNISENHLDYHADMAEYIDA 221

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F  +E+                              FG+        R  K     
Sbjct: 222 KFRLFRCMEEGDLAI-------------------------FGQGVRDLVAARDLK--PRT 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            + +   +          +G H   N+              + A KA++ F P E    R
Sbjct: 255 LFFDAAARRFPRTC---LLGGHNQANIEAAWQACREFGVTPEAAEKAVADFAPME---HR 308

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISV-----------------LSQISPHGEGRRI 372
                 +     +++S      +++ A+                   L+ + P   GR  
Sbjct: 309 LEAVAERNGVLWVNDSKCTTVEALRVALQAFDRPVVLMVGGKFKGGDLASLLPLLCGRVR 368

Query: 373 AVLG 376
           AV+G
Sbjct: 369 AVVG 372


>gi|158522611|ref|YP_001530481.1| UDP-N-acetylmuramate [Desulfococcus oleovorans Hxd3]
 gi|158511437|gb|ABW68404.1| UDP-N-acetylmuramate [Desulfococcus oleovorans Hxd3]
          Length = 474

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 137/426 (32%), Gaps = 36/426 (8%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAI 113
           F    +     LVVV   +          V  + +   A   +  A          ++ +
Sbjct: 66  FAAENLDNRPDLVVVGNAVSKDNAE----VVRLAEAGLAYCSMPQAIQHFAAKDREVLLV 121

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
            G+ GKTT   +L   L S     +  IG      G    L +        + E      
Sbjct: 122 CGTHGKTTASSLLAWMLYSAGLDPSFVIGGVVKDFGGNYRLGKG----RHMVIEGDEYDT 177

Query: 173 GEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                 +     RP +A++T +   H   F+    +     +   GL     +     D 
Sbjct: 178 AFFDKRSKFFHYRPKVAILTGVEFDHADIFADFGAVRKTFDKFIGGLLPESLLLAFDSDP 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               L  K  A  +K    +G   ++ ++L +       S +E+              IG
Sbjct: 238 VVRDLV-KGRACNVKM---YGNRDDSAWRLGRVTLQPPASVVEMICGDAVFGTFETRLIG 293

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N L        +    +   KAL+ F       +R +          + + +  +
Sbjct: 294 RYNLLNALAAAAAAHSVGVPAEEIKKALATFSGV----RRRQEVRGVVRGVTVMDDFAHH 349

Query: 350 PASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVL--SLYNIS 402
           P ++ A I+ +    P   GR IAV        M  + +   +   DLA+++  S   + 
Sbjct: 350 PTAVAATIAGVRPFYPE--GRLIAVFEPRTNTSMRNVFQQDYAKAFDLADMVCVSRVPLP 407

Query: 403 HVWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                G    +     D +      +  +  D +  F++     GDVV+V  SN  GF  
Sbjct: 408 EKVPEGMRFSSQQLADDLIKSGKEAYCFDGADAIVDFLKGRAAAGDVVLVM-SNG-GFDN 465

Query: 460 LINLLL 465
           +   LL
Sbjct: 466 IHEKLL 471


>gi|284031635|ref|YP_003381566.1| Mur ligase middle domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810928|gb|ADB32767.1| Mur ligase middle domain protein [Kribbella flavida DSM 17836]
          Length = 563

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 56/389 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------- 153
           LR K  ++A+TG+ GKTTT  M+     +         +   +    L            
Sbjct: 155 LRPKVPVVAVTGTNGKTTTSRMIAHIGRAAGLHVGWSSTDGVYFDGELVEYGDFSGPSGA 214

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKA 211
            R+       +     +  G +R    +    ++V+T ++  HL       ++++A  KA
Sbjct: 215 GRVLSQPGIQLAVTETARGGILRRGIGVATNDVSVVTNVSADHLGLGGIDTVDQLAEVKA 274

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I +     G   +N DD     ++  S A      + F +  ++           E   
Sbjct: 275 VITKITRPRGWCVVNGDDPRTFAMRLGSPAKS----WVFSRDPDS---PSIRTVLDEGGR 327

Query: 272 MEVQLQG-----------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
               L G                   + +   G+ ++  +N L        L       I
Sbjct: 328 ATTVLDGFVTVLDNASDAEPLVKVVDIPMTLSGLSHYNVENALAAASAALGLGLPRAAVI 387

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + L+ F P E    R      + F  +ID     N A ++A + +++ +     GR +  
Sbjct: 388 EGLTSFSPNENNPGRMNMYSLRDFTVVID--LAHNEAGLEALLEIMNGVR-RPGGRLLLA 444

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHV-------WLSGFHVLALKDALPRSIHVHYS 427
           LG     G+ S      +   +       V       +L G     L             
Sbjct: 445 LGSP---GDRSDEMVSAMG-AIGARGADRVVIGHKDTYLRGRPSAELDAVFREGTSSVGV 500

Query: 428 ETMD------GLFLFIQSSLVDGDVVVVK 450
           + +            + +    GDVV V 
Sbjct: 501 DDVPSYPTELDAAKALVAEAGPGDVVAVM 529


>gi|254441842|ref|ZP_05055335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
 gi|198251920|gb|EDY76235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
          Length = 465

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 108/355 (30%), Gaps = 37/355 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                S   +IA+TGS GK+TT  ++   L    +     G+    +           D 
Sbjct: 113 WDEFDSIPKVIAVTGSNGKSTTSALIYHILEHAGRPVQLGGNIGRGVLD----LDEAHDG 168

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    +   R LT    P +AV T + P HL   +G     +AK  +F      
Sbjct: 169 EVIVLELSSYQIDLARALT----PDVAVFTNLTPDHLDRHAGHGGYFAAKRRLFAEGGPD 224

Query: 221 GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +  D++    +  + S       +      +  D     W   + + ++    +G+
Sbjct: 225 -RAVIGVDEAEGHYIANQLSEGPSDDRVIRVSSGQKLD--GIGWSVFARKRFLNEYRKGR 281

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +  +    G H  QN          L         AL  F   +G   R +   
Sbjct: 282 QVGSIDLRAIAGLPGVHNHQNACAAYAACRALGIGPRVIEAALISF---KGLPHRSQLIA 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   N  +   A++   ++     G                      L  
Sbjct: 339 EHAGVRFVNDSKATNVDAAAKALAAFDKVRWICGG----------------LEKDGGLDA 382

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L    +   ++ G    A    L + + V     M        +    G+ V++
Sbjct: 383 LLPAPTVVKAYVIGREAAAFAMKL-KGLDVEVCGDMATAVTQAAADAQAGETVLL 436


>gi|220927591|ref|YP_002504500.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
 gi|219997919|gb|ACL74520.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
          Length = 893

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 168/465 (36%), Gaps = 65/465 (13%)

Query: 34  SRSIAPQEAFFAIKGPHY---D--GHDFILHAV------QKGAGLVVVNTD--MVASIGS 80
           +R I P+ A +AI        D  G DF    +       +GA + V       +    S
Sbjct: 397 TRDIHPKNAEYAIIAAKAMGLDIAGVDFSAQDISIPIDNNRGAIIEVNAAPGLRMHLHPS 456

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
              PV   D +L  +      A       ++A+TG+ GKTTT  ++   LS +       
Sbjct: 457 EGEPVNVADSILDMMYP----ANKPFSIPVVAVTGTNGKTTTTRLIRHTLSLLGYNVGMT 512

Query: 141 GSYNNHI------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            +   ++             V   +     +VD  + E   +  G +R         + V
Sbjct: 513 STSGIYVGNECVQKGDNTGPVSAEVILANKEVDVAVLE--TARGGIVRRGLGYDLADVGV 570

Query: 189 ITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           +  I+  HL     + +E++A  KA I E ++  G   LN DD     +  ++ +     
Sbjct: 571 LINISEDHLGIDGINTLEDLAKTKALIVEAVKHDGYAVLNADDGMTPYVLERTRS----N 626

Query: 247 IYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHM 292
           +  F +  +           +         ++ +Q  GK         + +   GI    
Sbjct: 627 VIMFSRGISNPVFKRHCKNSKNIAVYVRDGYIWIQRNGKKLPLISLDDIPITFGGIVDCN 686

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPA 351
            +N L  +  +  L   +D  IK +S F P  +    R+       F  +ID  Y+ N A
Sbjct: 687 IENSLAAISALIGLNIPLDIIIKGMSTFQPDTQLNPGRFNIFDMGTFKVMID--YSHNIA 744

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGD-----MCEMGEL-SQSFHI-DLAEVLSLYN--IS 402
              A +  + ++        I + GD       E+GEL ++SFH   + E + L      
Sbjct: 745 GYSAVVKFMQKVKAKRLVGIIGMPGDRQDSNFKEVGELCAKSFHRIYIKEDIDLRGRRRG 804

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            V       +    A   +I + YSET + L   +  +   GD++
Sbjct: 805 EVANIFEQSMINAGAKRENIEIIYSET-EALEKAMLDA-QPGDLI 847


>gi|71909112|ref|YP_286699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
 gi|118595653|sp|Q47AA2|MURD_DECAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71848733|gb|AAZ48229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
          Length = 450

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 91/427 (21%), Positives = 149/427 (34%), Gaps = 50/427 (11%)

Query: 33  DSRSIAPQ-EAF--FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           DSR   P  +A    A  G       F   A   GA  V ++  +  +   ++     + 
Sbjct: 35  DSRDNPPNIDALQRVA-PGAELVAGAFA-EATFAGADFVALSPGVPKATPEIAALEIPLI 92

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             +             S+  IIAITGS GKTTT  +    L+         G+ +     
Sbjct: 93  SEIELFADGVREQVPNSQ--IIAITGSNGKTTTTALTAHLLNGAGVPAIACGNISPSALD 150

Query: 150 PLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIA 207
            L  A+    +    + EL    L      TH +    A +  ++  HL      +   A
Sbjct: 151 ALMDAQDAGALPQVWVVELSSFQL----ETTHHLNAAAATVLNVSEDHLDRYEGSLANYA 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK+ +F+G    G + LN DD +     + ++    + + +FG   NA  +   +    
Sbjct: 207 AAKSRVFQG---KGVMVLNRDDDW-----SMANGRCGRKMVTFGL--NAAPRGVDYGYAD 256

Query: 268 EQSWMEVQLQGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              W     +GK            G H A N +  L +   +  D    I+ L  F    
Sbjct: 257 GAIW-----RGKDKLVAIDALKLSGLHNAANAMAALALCEAIGVDPLRLIEPLKGFS--- 308

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGE 383
           G   R       G    +D+S   N  +  AAI         G GR++A VLG   +  +
Sbjct: 309 GLPHRVETVAEIGGVLYVDDSKGTNVGATLAAIE--------GMGRKVAIVLGGDGKGQD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            S        +     +   V L G    A+  AL    +       M+   L++ +   
Sbjct: 361 FSP------LKPALEKHGRAVALIGRDAAAIGMALEGSGVPTRILGDMEAAVLWLAAQAQ 414

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 415 AGDCVLL 421


>gi|307294498|ref|ZP_07574340.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878972|gb|EFN10190.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 440

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 125/394 (31%), Gaps = 65/394 (16%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G+ +    +        +P+ G  + L AL + A+      K  ++ ITG+ GK+TT  +
Sbjct: 74  GVPLNKHPIAMHARLAGVPIIGDIE-LFALARPAL-----PKHRVVGITGTNGKSTTTAL 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   + +        G+    I     L     +    + EL    +     LT  +   
Sbjct: 128 VHHIIETAGIPTRMGGNIGLPILGQEPL----PEGGVYVLELSSYQID----LTQSLDCD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+  I P HL  ++G E   ++KA +FE         +  +D     +          
Sbjct: 180 VAVLLNITPDHLDRYNGFEGYVASKARLFEMQSVDHVAVIATEDEPSRSIFENLRHSRE- 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G +   + +       ++  W  +Q             G H AQN  + + +   
Sbjct: 239 -----GGNDVVEVKSSDIDPAAQARWPALQ-------------GPHNAQNAAVAIAVAQA 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D     + L  +     R +R R          +++S   N AS   A        P
Sbjct: 281 LGIDEAIIEQGLQSYASLPHRMQRVR---ELNGVLYVNDSKATNAASTAPA----LAAYP 333

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH----------VWLSGFHVLALK 415
             +GR+                 H  +  +    N+             +  G       
Sbjct: 334 PMDGRK---------------RLHWIVGGLAKTDNLDECAPWFGNVAQAYTIGEAGHMFA 378

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           D L   + V  SE +             GDVV++
Sbjct: 379 DLLRPHMAVDDSEMLSAAVRRAARVAQPGDVVLL 412


>gi|238026180|ref|YP_002910411.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia glumae BGR1]
 gi|237875374|gb|ACR27707.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia glumae BGR1]
          Length = 470

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 128/377 (33%), Gaps = 38/377 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     +  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEESGLNPGFLIGGVPLNFGVSARLT----ESSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVAN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             ++  + + A+        +  FG                 E     V  QG  M EV 
Sbjct: 221 GREAALDRVLARG---CWSEVERFGVEGGWQALPAEDGVPVDE--RFAVYWQGARMGEVA 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN L  +     +      A +A + F   +   +R     +    T+ D+
Sbjct: 276 WSVQGEHNRQNALAAIAAARSVGVPPAQAARAFATFRNVK---RRMEIRGSVDGVTVYDD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
            +  +P +++  I+ L         R +AVL      M  +G +            SL +
Sbjct: 333 -FAHHPTAIETTIAGLRTRIGREHTRILAVLEPRSNTMK-LGTMKAQL------PASLAD 384

Query: 401 ISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G          +L +AL P        + +  L   + ++   GD ++V  SN
Sbjct: 385 ADLVFGYGAASGRDALGWSLAEALAPLGARAQAFDDLHALVKAVAAAARPGDQILVM-SN 443

Query: 454 SCGFYRLINLLLEEFPA 470
             GF  +   LL+   A
Sbjct: 444 G-GFGGVHQKLLDALSA 459


>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9902]
 gi|118595699|sp|Q3AZI5|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9902]
          Length = 462

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 112/347 (32%), Gaps = 36/347 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++ +A    +    + ITG+ GKTT   +L+  L          G+            R
Sbjct: 98  GEIELAWEALNDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGNMGVSAADMALKIR 157

Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D+ + EL    +     L     P I + TT+ P HL     +E   + K  +
Sbjct: 158 RGETPKPDWLVMELSSYQIEAGPNLA----PSIGIWTTLTPDHLERHGTLEAYRAIKHSL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
              L+++     N DD+     + +    + +K          ADF +       +   +
Sbjct: 214 ---LQRSSLAIFNGDDADLSAHRPSLKRGMWVKAAPPCHDDPPADFWI------DDAGTV 264

Query: 273 EVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + +  G      V    G H  QN+L+     + +  + +   + L  F        R  
Sbjct: 265 QAREGGAMFPAKVLAMPGAHNRQNLLLVTAAAAQIGLNAEQIAQGLESFPGVP---HRLE 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +     + ++S   N  +    +  ++       G  + + G   + G  +      
Sbjct: 322 NLGSTSSADVFNDSKATNYDAAAVGLQAMA-------GPVVVLAGGQTKRGNATGW---- 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFL 435
           LAE+ S      V L G     L   + +S     VH    +     
Sbjct: 371 LAELKSKACA--VVLFGAGAEELDALIRQSNYQGQVHRCTDLSAAVA 415


>gi|225009953|ref|ZP_03700425.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005432|gb|EEG43382.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
          Length = 318

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 81/225 (36%), Gaps = 15/225 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFEL 167
           +I ITGS GKTTT  +    L S  K  A  G+        +  A +P    +D+ + EL
Sbjct: 104 LIGITGSNGKTTTTMLTHHILKSDGKAVAMGGNIGVSFAKLVYEAHLPEAEKIDYYVLEL 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
               L  I       RPHIA+IT I+P HL  +   ++   +AK  I      T  +  +
Sbjct: 164 SSFQLDNIENF----RPHIAIITNISPDHLDRYGYEMDRYTAAKFRISMNQLPTDYLIYD 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            D         +    G +  +S  K     A  +    +   +Q    +Q+        
Sbjct: 220 ADCEVIGAALDQFPETGKRIAFSTQKIIKNGACQKGENIEIALDQKTFSMQIN------T 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               G H  +N +      +++  ++       + F  K      
Sbjct: 274 LALEGTHNVKNTMAASAAATLVQMNLMRCFLIQTCFGLKNAVMHP 318


>gi|167750036|ref|ZP_02422163.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
 gi|167657057|gb|EDS01187.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
          Length = 438

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/376 (14%), Positives = 120/376 (31%), Gaps = 42/376 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            + + D++     + +     D++   +              II ITG+ GK+TT  ++ 
Sbjct: 67  CLDDCDIIMKAPGVILKNIVSDEIKAKITSQTDLFLRFCDNMIIGITGTKGKSTTSSLIK 126

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +    K    IG+       PL            + E+    L  ++       P +A
Sbjct: 127 FFIEKSGKDTMLIGNIGVP---PLERREEFTKDCVIVCEMSCHQLEYVK-----ASPDVA 178

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  I P HL +++      +AK  IF    +  T+ +       E +K  +       +
Sbjct: 179 VLLNIYPEHLDHYTDFAAYRNAKLNIFRYQNENDTLII------GEEVKQYADTKA--RV 230

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + G      F        +   ++ +       ++      G H   N+ + +   +  
Sbjct: 231 ITAG------FSCGDIGTRNGGIFIGDEFYPADMIDTKLK--GEHNLYNIAIAIYAATKA 282

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V     AL  F    G   R            I++S +  P +  AA+         
Sbjct: 283 GCTVKQCFDALPQF---CGLEHRLEYVCTLNGAEYINDSISTAPQTAIAALKAYPDTD-- 337

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHV 424
                  ++G M          + +L++ LS   +  + + L        +      + +
Sbjct: 338 -----TLIIGGMDRGIP-----YDELSDWLSGDTLVRNLIILPDSGKRVAEKVTNPLVKL 387

Query: 425 HYSETMDGLFLFIQSS 440
            Y++ M+    + +  
Sbjct: 388 IYADDMEQAVKYAKQV 403


>gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
 gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
          Length = 276

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 21/214 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 56  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 115

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 233

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            R  +   T ++  HL     + +   AKA +F+
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 267


>gi|158834070|gb|ABW81840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 21/272 (7%)

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           LSS + T A        I V   L+ M    V F   E+    L  ++     +    +V
Sbjct: 3   LSSNQNTTASA------IEVQQILSNMLTHKVTFAAMEVSSHAL--VQHRVAALPFAASV 54

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIK 245
            + ++  HL     +     AK  +F   E      +N DD   +    +   + A+   
Sbjct: 55  FSNLSRDHLDYHGDMANYEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPNAVAVSTS 113

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G  + A    +K +     + +         E+    +G     N+L+TL  +  
Sbjct: 114 HQIPSGL-QGAWMSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLA 172

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D  +KA S   P  GR + ++     G  T+I + Y   P ++K     L+    
Sbjct: 173 LKYPLDALLKAASKLQPIPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRM 225

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           H +G+   + G   +  +  +     +AE L+
Sbjct: 226 HCQGKLWCLFGCGGDRDKGKRPLMGKIAETLA 257


>gi|331090022|ref|ZP_08338912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330402936|gb|EGG82502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 447

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 126/373 (33%), Gaps = 45/373 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   +   K+    +G+         ++A+   D    + E
Sbjct: 105 KGDVLAITGTNGKTTTTALLGQIMQDYKEHAYIVGNIGTPYT---SVAQETTDDAVIVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I    H   P ++ I  I P HL+    +E    AK  I E   K     LN
Sbjct: 162 ISSFQLETI----HTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
           Y+D   +    K+ A     +  F  ++  +   +       +      +  +  +V   
Sbjct: 218 YEDDELQKFGEKTAA----QVLYFSSARKLE---KGIYLDGTKIICAADVPVELCDVSEL 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N++    +       ++   K L  F   E    R      +      ++S
Sbjct: 271 KILGTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVE---HRIEFVAEKRGVLYYNDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +    I  +++ +    G            G    S + +  +      +  + 
Sbjct: 328 KGTNPDAAIKGIQAMNRPTILIGG------------GYDKDSEYDEWIKAFDG-KVRKLV 374

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G     +  +   +    +  ++T +  F         GD V++    +S        
Sbjct: 375 LLGATREKIAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLLSPACASWGMFKNYE 434

Query: 453 -NSCGFYRLINLL 464
                F  L++ L
Sbjct: 435 ERGDKFKELVDQL 447


>gi|257081246|ref|ZP_05575607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|257083904|ref|ZP_05578265.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300859813|ref|ZP_07105901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|256989276|gb|EEU76578.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|256991934|gb|EEU79236.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300850631|gb|EFK78380.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|315144378|gb|EFT88394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2141]
 gi|315162942|gb|EFU06959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0645]
          Length = 456

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTADDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|88707115|ref|ZP_01104809.1| cyanphycin synthetase [Congregibacter litoralis KT71]
 gi|88698627|gb|EAQ95752.1| cyanphycin synthetase [Congregibacter litoralis KT71]
          Length = 544

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 149/436 (34%), Gaps = 63/436 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A + GA +V+    +    G  S       D+    +   V+ R         ITG+
Sbjct: 104 LAAAREHGAPVVLDEDVLTLGTGRHSQSW----DLFELPHPDDVSWRGLKAVPTALITGT 159

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-----------VDVDFGIF 165
            GKTTT  +L     +  +      +    +G  L L R              D    + 
Sbjct: 160 NGKTTTVRLLASIAKTAGQVAGVSSTDWLAMGDEL-LHRDDYAGPGGARIVLRDQRCELA 218

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTI 223
            L  +  G +R    + R  +A+IT IA  HL +F    +E++A  K  +   L+K  ++
Sbjct: 219 LLETARGGLLRRGLAVARADVALITNIAADHLGDFGVETLEDLADVKWSVTAALDKKSSL 278

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-------- 275
            LN +D       A + A        F  S +A       ++  +     ++        
Sbjct: 279 VLNAEDPLLMARAASASAPLCL----FSLSPSAPAFKTHVEKGGKG--FTLRRGRLERIE 332

Query: 276 -------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                  L  K M + + G+  H   N L    +   L  D++   + L     ++  G+
Sbjct: 333 GGVGKSFLSAKKMPLSYGGVARHNIANALAAAAVADALGMDLEVIARGLCALGNEDNPGR 392

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                   G  T + + +  NPA ++A + ++  +      RR  + G     G+     
Sbjct: 393 A--NLYTVGGATFLVD-FAHNPAGLEALMPMVEGLPA---RRRALITGQ---AGDRGDED 443

Query: 389 HIDLAEVLSLYNISHVWL-----------SGFHVLALKDALPRSIH----VHYSETMDGL 433
               A+  +  +   +WL            G     ++DA     H    +  S+T    
Sbjct: 444 IRAFADASAALHFDRIWLKRMDGHARGRAEGEVARIMRDAFIEQGHSAKSISLSKTELDA 503

Query: 434 FLFIQSSLVDGDVVVV 449
                     GD+VV+
Sbjct: 504 TRAALRWAKPGDLVVL 519


>gi|154685939|ref|YP_001421100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens FZB42]
 gi|166224750|sp|A7Z4E3|MURD_BACA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154351790|gb|ABS73869.1| MurD [Bacillus amyloliquefaciens FZB42]
          Length = 451

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 113/348 (32%), Gaps = 39/348 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  ++   L +        G+      V   +A      ++ + 
Sbjct: 111 TNAKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGT---VASEVAYHADGDEWIVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH  RP I +I  +  AHL      E    AK  ++    ++ T  +
Sbjct: 168 ELSSFQLMG----THAFRPEIGLILNVFDAHLDYHHSRENYEKAKQNVYLHQLESDTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
           N  D     L     A  +     F   +     L       +   M      +++  V 
Sbjct: 224 NQSDETVVRLAESGKAGTVP----FSVHQE----LSSGAFIKDGMLM---FGDEAILPVD 272

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N+L  +       A      K L+ F   + R +      N+ F+   +
Sbjct: 273 DIVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYVTAIQNRKFY---N 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +   A+S             + +L    + G         +       N+  
Sbjct: 330 DSKATNILATSKALSAFKA--------PVILLAGGLDRGNGFDDLKPYM------DNVKA 375

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V   G     ++         HV   + ++       +   +GDV+++
Sbjct: 376 VLTFGQTAPKIEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|154505722|ref|ZP_02042460.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
 gi|153794019|gb|EDN76439.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
          Length = 452

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 128/374 (34%), Gaps = 47/374 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   + + +++   +G+  N      ++ R   D    + E
Sbjct: 110 KGDVLAITGTNGKTTTTALLGAIMKNFRESTFVVGNIGNPYT---SVVRETKDDSVIVAE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I        P ++ I  I P HL+    +E    AK +I +   +     LN
Sbjct: 167 MSSFQLETIHTFC----PKVSAILNITPDHLNRHHTMEAYIEAKEQIAKNQTEEDVCVLN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
           Y+D        +  A     +  F   +    +L K     + + +  +   + +  V  
Sbjct: 223 YEDDVTRKFGERVKA----QVIYFSSRR----RLEKGIYLEDGNIIYCRENPEKVCHVDE 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  +N++  + + +     ++   K +  F   E    R      +      ++
Sbjct: 275 LKLLGMHNYENVMAAVAMAAAYHVPMEIIRKTIREFTAVE---HRIEFVAEKNGVAYYND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   NP +    I  +++ +    G            G    S + +  +      +  +
Sbjct: 332 SKGTNPDAAIKGIQAMNRPTFLIGG------------GYDKDSSYDEWIQSFDG-KVKKL 378

Query: 405 WLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------- 452
            L G     + +   R        ++T +            GD V++    +S       
Sbjct: 379 VLLGATKEKINETAKRLGFTDTILADTFEEAVNICVEQAEPGDAVLLSPACASWGMFKNY 438

Query: 453 --NSCGFYRLINLL 464
                 F  L+N L
Sbjct: 439 EERGDKFKELVNQL 452


>gi|110834835|ref|YP_693694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diamino
           [Alcanivorax borkumensis SK2]
 gi|110647946|emb|CAL17422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diamino
           [Alcanivorax borkumensis SK2]
          Length = 450

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 98/270 (36%), Gaps = 21/270 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEYAGLKPGYLIGGVPGNFGVSARLGETP----FFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP   ++  +   H   F+ +  I +    +   +  TG + L 
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLILP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
           + ++  E    K        +  FGK +   ++L +    ++ S   V   G+ + +V  
Sbjct: 221 HGEAALEETLEKG---CWSNVERFGKEEALGYRLDQ----ADGSSFTVLESGEPVAQVRW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +  L     +   +     ALS F   +   +R       G   + D+ 
Sbjct: 274 EQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVK---RRMELRGEVGGVRVYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +  +P ++   +  L      G G+ +A++
Sbjct: 330 FAHHPTAIATTLDGLR--RKVGNGKILAII 357


>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
           japonicus Ueda107]
 gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
           japonicus Ueda107]
          Length = 455

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 135/382 (35%), Gaps = 42/382 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V V T  +       IP+ G  ++              ++A ++AITGS  K+T   ++ 
Sbjct: 86  VAVATPALVQAREAGIPIIGDIEL----------FVRHARAPMVAITGSNAKSTVTTLVG 135

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +     A  G+          L  +  D++  + EL    L       + +   +A
Sbjct: 136 EMAKAAGIQVAVGGNLGTP-----ALELLRDDIELYVMELSSFQL----ETVNKLNAKVA 186

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I  I+  HL  +  +     AK  I+ G E    I +N +D    +L     A+G K +
Sbjct: 187 TILNISADHLDRYPDMRAYILAKLRIYFGAEN---IVVNRND----ILTHPPLAVGAKPV 239

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y  G+   ADF          + ++   L            G H   N L  L +     
Sbjct: 240 YFGGR---ADFGAFGLLDRDGEEYLAKNLTPLLPARELKIRGRHNIDNALAALALGDAAG 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   + AL  F    G   R     +       ++S   N  +  AAI+ L+++    
Sbjct: 297 IPMAAMLGALREF---RGLRHRCEYVASIDGVEFYNDSKGTNIGATLAAINGLARVP--- 350

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             R   + G   +  + ++      A +++   +  + L G     +  A+   + VH +
Sbjct: 351 -SRLFVIAGGDGKGQDFTELT----ASLVASRCV--LVLIGRDAPLIASAVGEQVPVHVA 403

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           +T+        +    GD V++
Sbjct: 404 QTLKDAVNLSLALATAGDAVLL 425


>gi|317501229|ref|ZP_07959434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897405|gb|EFV19471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 454

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 126/373 (33%), Gaps = 45/373 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   +   K+    +G+         ++A+   D    + E
Sbjct: 112 KGDVLAITGTNGKTTTTALLGQIMQDYKEHAYIVGNIGTPYT---SVAQETTDDAVIVAE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I    H   P ++ I  I P HL+    +E    AK  I E   K     LN
Sbjct: 169 ISSFQLETI----HTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
           Y+D   +    K+ A     +  F  ++  +   +       +      +  +  +V   
Sbjct: 225 YEDDELQKFGEKTAA----QVLYFSSARKLE---KGIYLDGTKIICAADVPVELCDVSEL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N++    +       ++   K L  F   E    R      +      ++S
Sbjct: 278 KILGTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVE---HRIEFVAEKRGVLYYNDS 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +    I  +++ +    G            G    S + +  +      +  + 
Sbjct: 335 KGTNPDAAIKGIQAMNRPTILIGG------------GYDKDSEYDEWIKAFDG-KVRKLV 381

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G     +  +   +    +  ++T +  F         GD V++    +S        
Sbjct: 382 LLGATREKIAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLLSPACASWGMFKNYE 441

Query: 453 -NSCGFYRLINLL 464
                F  L++ L
Sbjct: 442 ERGDKFKELVDQL 454


>gi|294791077|ref|ZP_06756235.1| UDP-N-acetylmuramate--alanine ligase [Scardovia inopinata F0304]
 gi|294458974|gb|EFG27327.1| UDP-N-acetylmuramate--alanine ligase [Scardovia inopinata F0304]
          Length = 533

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 145/449 (32%), Gaps = 78/449 (17%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  VV ++ + +    +          L  L++  + A L + +  + + G+ GKTTT
Sbjct: 91  QGAQTVVWSSAIKSDNPEI---QEASRRGLRILHRSDILALLMAHSRSVTVAGAHGKTTT 147

Query: 123 KEMLTIALSSI------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             M+   L S         ++A  GS                     + E   S     +
Sbjct: 148 SAMIAQILQSASSSDLHDPSFAIGGSI--RTDQGTVDGGHAGGGTVFVAEADESDGSFEK 205

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELL 235
           +      P IAVIT + P HL ++        A  +          + L  DD     +L
Sbjct: 206 Y-----HPSIAVITNVEPDHLDHYGSAAAFQQAFVD--HAHHALDHVILCGDDPGALAVL 258

Query: 236 KA-KSHALGIKTIYS----FG------------KSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K+    AL    +Y+    F             + + A+ Q+   +Q        + L  
Sbjct: 259 KSLNQEALHHAVVYTTQEDFSLAGLPATLVRIEQEETAEAQVESGQQDQAAESFSLLLPA 318

Query: 279 ----------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                               V     G H A+N    +    +L  +   A +A   F  
Sbjct: 319 SLLAQSEGGPSQDVLPGRYPVKLRVPGLHNARNAAAAIICSILLGMNPHQACQAAYTF-- 376

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G  +R+     +   T++D+ Y  +P  + A +    +  P  + R I        + 
Sbjct: 377 -YGAKRRFEIRGVERAVTVVDD-YAHHPTEIVALLKAARRRFPQSKIRVIF----QPHLY 430

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG-------------FHVLALKDALPRSIHVHYSET 429
             +  F    A+ LSL     V ++G                  +   + +     +S +
Sbjct: 431 SRTFYFAQQFADALSL--ADDVMVTGIFPAREKQEDWPQVSADTIVSLMKKENGPEFSAS 488

Query: 430 MDGLFL---FIQSSLVDGDVVVVKSSNSC 455
           +D +      + S    GDVV+   + S 
Sbjct: 489 IDDMNQAGRLMASHCGPGDVVITVGAGSI 517


>gi|225351421|ref|ZP_03742444.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157765|gb|EEG71048.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 480

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 135/361 (37%), Gaps = 45/361 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GKT+T EM +  L++   T   +G+    IG  ++ A +    D    EL   
Sbjct: 107 IGITGTNGKTSTTEMTSEMLTACDLTAPAVGN----IGKAVSHAVVDPANDVLCVELSSF 162

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      T  +    A IT IA  HL    GIE  A+ KA++F  ++K   +  N DD 
Sbjct: 163 QL----HFTDSLALDCAAITNIADDHLDWHGGIENYAADKAKVFHRVKK--ALVYNADDE 216

Query: 231 FFELLK-AKSHALGIKTI-YSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK-----SM 281
               L  A   A G + + ++  + ++    ++       S  +  E+ +  +       
Sbjct: 217 RVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMSGIAGGELGMPEQVAKVSEF 276

Query: 282 EVVHHGIGY---HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQ 336
             +    G    H+  + L  L +V  L AD + AI +L  F P   R +    A   + 
Sbjct: 277 THLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLEQFTPGGHRIQTVATATTPDG 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G    +D+S   N  + KA+++  +        + +  +      G   +    +     
Sbjct: 337 GSIRFVDDSKATNAHAAKASLNSFAD-------KSVVWIAGGLAKGSRFEQLVAE----- 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRS---IHVHYSE------TMDGLFLFIQSSLVDGDVV 447
             + I    + G     + DA   S   I +   +       M+            GDVV
Sbjct: 385 QSHTIKAAVVIGKDQQPILDAFAASAPDIPLTIIDPANNDVIMERAVDAAGEYAQSGDVV 444

Query: 448 V 448
           +
Sbjct: 445 L 445


>gi|114566875|ref|YP_754029.1| cyanophycin synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337810|gb|ABI68658.1| UDP-N-acetylmuramyl tripeptide synthase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 887

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 43/394 (10%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
            +V  A+      A   S   II+ITG+ GKTT   ++   LS   +      S   +I 
Sbjct: 461 RNVAAAILDQMYTAGSMSSIPIISITGTNGKTTVARLIRHVLSLAGQKVGMTCSSGTYIG 520

Query: 148 ---------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL- 197
                      PL+   +  + D  +  L  +  G IR         + VIT I+  HL 
Sbjct: 521 KECIAEGDNTGPLSAHSILYNRDVEVAVLETARGGIIRRGLGYDLADVGVITNISGDHLG 580

Query: 198 -SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             + + +E++A  K+ + E ++  G   LN DD   E +  K+    +     F  +++ 
Sbjct: 581 MDDINTLEDMAFVKSLVVEAIKPNGYAVLNADDGMTEHIVRKASCNPVL----FSLNRDN 636

Query: 257 DFQLRKWKQCSEQSWME----VQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIV 303
                  KQ      +E    V  Q K          + +  +G      +N L  +  +
Sbjct: 637 MLVEDHIKQDGMAVVIEEDLIVIYQNKIRDEIMTINEIPITFNGKAICNIENSLAAVASL 696

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           S      +     L  F       + R+       F  L+D  Y  N ++ ++ +  ++ 
Sbjct: 697 SAFGLAKNVIRLGLMSFTSDPTANEGRFNLFDMGSFRVLLD--YGHNYSAYQSVMQFINN 754

Query: 363 ISPHGEGRRIAVLGDMCE---------MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           ++       I V GD  +          G+     +I   E L   +   V    ++   
Sbjct: 755 MNAARLVGIIGVPGDRLDKTIFDIGQISGQAFSKIYIKEDEDLRGRSAGEVAGILYNGAV 814

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              A   ++ +  SET D L   I ++   GD++
Sbjct: 815 SGGADRENMEIVLSET-DALNAAINNAFT-GDLI 846


>gi|254448639|ref|ZP_05062098.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium HTCC5015]
 gi|198261828|gb|EDY86114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium HTCC5015]
          Length = 450

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 130/375 (34%), Gaps = 31/375 (8%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  L  +  ++ + G+ GKTTT  ML   L          IG    + G    L    
Sbjct: 94  WLAENLLHQRWVLGVAGTHGKTTTSAMLAWVLECAGMAPGFLIGGVPENFGCSARLG--- 150

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            D DF + E            +  V  RP  A++  +   H   F  +  I      +  
Sbjct: 151 -DTDFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIQRQFHHLMR 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G +    +    + +        ++ +         D+ +   +  ++ S  +V 
Sbjct: 210 CIPGQGRVISPANSEPLDDVLKMGCWSEVERV-------GGDWTIE--QSAADFSAFDVC 260

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            QG+S   +    IG H A N +  +     +      AI+AL+ F   +   +R     
Sbjct: 261 FQGQSQGRLEWSLIGEHNAHNAVAAIAAARHVGVLPAQAIEALAAFKNVK---RRMELRG 317

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 + D+ +  +P ++K  +  L   +  G+GR +AVL         S S  +   +
Sbjct: 318 EVAGIKVYDD-FAHHPTAIKTTVEGLR--AQVGDGRIVAVLE------PRSNSMRMGAHK 368

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              L  ++       H+    +       V     +D L   I  +L  GD V+V  SN 
Sbjct: 369 AAVLPALAAADAVWLHLPKEVEWSLEGEGVRVQRDLDILPQQIAETLQSGDTVLVM-SNG 427

Query: 455 CGFYRLINLLLEEFP 469
             F  +   LL+   
Sbjct: 428 S-FGNIHQRLLDCLK 441


>gi|171060710|ref|YP_001793059.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
 gi|170778155|gb|ACB36294.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
          Length = 865

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 131/384 (34%), Gaps = 56/384 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------- 155
           +  ++A+TG+ GKTT   ++   L++         +   ++      +            
Sbjct: 474 RIPLVAVTGTNGKTTATRLIAHILATSGLRVGMTNTDGVYVNGRQIDSGDCSGPKSARNV 533

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKA 211
            M  DVD  +FE   +  G +R      R  +AV+T I    HL     + +E++A  K 
Sbjct: 534 LMHPDVDAAVFE--TARGGVLREGLGFDRCQVAVVTNIGAGDHLGLNYITTVEDLAVLKR 591

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I + +  +G   LN  D     +           +  F   +          Q     +
Sbjct: 592 VIVQNVAASGYAVLNAADPICAAMATTCPG----QVIFFAADRQHPVMATHRAQGKRCVF 647

Query: 272 ME----VQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           ++    V  +G        + + +   G+     +N +  +     +  D D   + L+ 
Sbjct: 648 VDGDQLVAAEGAWRESVSLRDIPITRGGLIGFQVENAMAAVAAAWGVGLDWDAVRRGLAS 707

Query: 320 F-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           F +  +    R+     +G   + D  Y  NP +M+A +S +  +    + R + + G  
Sbjct: 708 FVNDADNAPGRFNVLDYRGATVIAD--YGHNPDAMRALVSAVDALPG--KRRSVVISG-- 761

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSE 428
              G+       +  ++L       V L           G  +  L++ L  +      +
Sbjct: 762 --AGDRRDEDIREQTQILGQA-FDDVILFQDACQRGREDGEVLRLLREGLSDATRTRRVD 818

Query: 429 TMDG---LFLFIQSSLVDGDVVVV 449
            + G           L  GD+ +V
Sbjct: 819 EIYGEFIAIDAALERLEPGDLCLV 842


>gi|149184749|ref|ZP_01863067.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
 gi|148832069|gb|EDL50502.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
          Length = 475

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 125/362 (34%), Gaps = 40/362 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GK+T   ML   L +  +  A        +   ++  R       G   +  S
Sbjct: 121 IAVAGTSGKSTVTGMLGWILEATGR--APTIMNGAVMKNFVSPERPFASAVVGSQSIYAS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            + E      L RP + V+  ++  H      +EE+        + L ++    +N DD 
Sbjct: 179 EVDESDGSIALYRPAVGVLLNVSLDH----KSMEELRQLFG---DYLSRSRISVINADDE 231

Query: 231 FFELLKAKSHALGIKTIYSFGKSKN-ADFQL---RKWKQCSEQSWMEVQLQGKSMEV-VH 285
               L  ++     K + +FG  ++ A   +      +    Q+ M +    KS +    
Sbjct: 232 EALALLPQA-----KDVITFGIEQDKAQISIVPGSIAEGPVRQAAMVIDRHDKSEQALRL 286

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  +   +     V  +++AL+ F   EG  +R+           + + 
Sbjct: 287 NMPGRHNLSNALAAIAGAAAAGVPVAASVEALAGF---EGLARRFDIVGTSHAAITVIDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-------ELSQSFHIDLAEVLSL 398
           +  NP    A +  L   S      R+ V       G       EL+Q F  +LAE   +
Sbjct: 344 FGHNPEKCAATLRTLRAHSG-----RVLVFFQPHGYGPLRQMGDELAQVFVDELAEDDRV 398

Query: 399 YNISHVWLSG-----FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                V+  G          +   + +      Y  T   +   + +    GD +VV  +
Sbjct: 399 LMCDPVYFGGTVDRSEGSERIVRLVEQAGGRAEYIPTRKAIEDRLVNLASPGDRIVVMGA 458

Query: 453 NS 454
             
Sbjct: 459 RD 460


>gi|153814610|ref|ZP_01967278.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
 gi|145848104|gb|EDK25022.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
          Length = 454

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 126/373 (33%), Gaps = 45/373 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   +   K+    +G+         ++A+   D    + E
Sbjct: 112 KGDVLAITGTNGKTTTTALLGQIMQDYKEHAYIVGNIGTPYT---SVAQETTDDAVIVAE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I    H   P ++ I  I P HL+    +E    AK  I E   K     LN
Sbjct: 169 ISSFQLETI----HTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
           Y+D   +    K+ A     +  F  ++  +   +       +      +  +  +V   
Sbjct: 225 YEDDELQKFGEKTAA----QVLYFSSARKLE---KGIYLDGTKIICAADVPVELCDVSEL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N++    +       ++   K L  F   E    R      +      ++S
Sbjct: 278 KILGTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVE---HRIEFVAEKRGVLYYNDS 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +    I  +++ +    G            G    S + +  +      +  + 
Sbjct: 335 KGTNPDAAIKGIQAMNRPTILIGG------------GYDKDSEYDEWIKAFDG-KVRKLV 381

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G     +  +   +    +  ++T +  F         GD V++    +S        
Sbjct: 382 LLGATREKIAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLLSPACASWGMFKNYE 441

Query: 453 -NSCGFYRLINLL 464
                F  L++ L
Sbjct: 442 ERGDKFKELVDQL 454


>gi|226942950|ref|YP_002798023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azotobacter vinelandii DJ]
 gi|226717877|gb|ACO77048.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azotobacter vinelandii DJ]
          Length = 450

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 120/358 (33%), Gaps = 40/358 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L     +    IG    + GV   L       DF + E  
Sbjct: 105 VLAVAGTHGKTTTTSMLAWVLEQAGMSPGFLIGGVPQNFGVSARLG----GSDFFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I      +   +   G I   
Sbjct: 161 EYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTIPSQGLIVYP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEV 283
             +   E + A      ++T       +   +Q R   +  + S  EV+ +G     ++ 
Sbjct: 221 TTEEAIERMLAMGRWTPVQT-----TGEGGQWQARLLVE--DGSRFEVRFEGAPQGVVDW 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L     +    +  I AL  F   +   +R          TL D
Sbjct: 274 ELS--GRHNVANALAALAAARHVGVAAEQGIAALGGFRNVK---RRMEKVAEVRGVTLYD 328

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNI 401
           + +  +P ++   +  L      GE   IAV+    E    S     H D     ++   
Sbjct: 329 D-FAHHPTAIATTLDGLR--KRVGEAPIIAVI----EPRSNSMKLGAHRD-GLPGAVAQA 380

Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             V        G+ + A   A P  +     E+++ +   + S    G  VV+  SN 
Sbjct: 381 DQVVWYAPPNLGWDLAATAAACP--VPAVVCESLEAIIARVVSQAAPGTQVVIM-SNG 435


>gi|323480232|gb|ADX79671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis 62]
          Length = 456

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTADDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|313638769|gb|EFS03857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria seeligeri FSL S4-171]
          Length = 122

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++P +++  +     +   G+  +  VL DM E+GELS   H + AEVL    I  ++L 
Sbjct: 1   SSPTALQTVLKTFMHMDSKGKP-KYLVLADMLELGELSVPLHQESAEVLEEGTIEKIFLY 59

Query: 408 GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G  + A        I    V + +T + L   +   +   + ++VK S   G   ++  L
Sbjct: 60  GDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKEITGNEWILVKGSYGMGLKDVVENL 119

Query: 465 L 465
           +
Sbjct: 120 I 120


>gi|163794525|ref|ZP_02188496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
 gi|159180249|gb|EDP64772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
          Length = 472

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 109/361 (30%), Gaps = 35/361 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +  + +  R      ++AITG+ GK+TT  ++   L+S        G+       P    
Sbjct: 98  IGDVELLLRALPDRRLVAITGTNGKSTTTALIGHILASANVPVEVGGNLGR----PALEF 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             P      + EL    L     LT  + P +AV   I P H+     +    +AK  IF
Sbjct: 154 ADPGPNGVVVLELSSYQL----ELTPSLAPTVAVWLNITPDHIDRHGSLAGYVAAKRRIF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQS-WM 272
                 G   +  DD+    +  +    G +    S              +    +S   
Sbjct: 210 AHQTPRGLAVIGNDDAHSRDVADRLRRDGRRIFDLSGVGPVVGGVYAEDSELIDARSGRP 269

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E  L   S+       G H AQN        + L          +  F    G   R   
Sbjct: 270 ETVL---SLTEAPALPGEHNAQNAAAAFAACAALGIQRSAIADGIRSF---PGLAHRQER 323

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +++S   N  +   A++  S I     GR         E G  S      L
Sbjct: 324 IAEAGGVLYVNDSKATNADAAARALACYSAIYWIAGGR-------GKEGGVSS------L 370

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVV 448
           A       I   +L G         +          T++       L  Q+    G VV+
Sbjct: 371 APFFPR--IRKAYLIGESAGTFAREIGDDCPTGLCRTLEMAVRQAHLDAQADPRPGAVVL 428

Query: 449 V 449
           +
Sbjct: 429 L 429


>gi|312963256|ref|ZP_07777740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Pseudomonas fluorescens WH6]
 gi|311282522|gb|EFQ61119.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Pseudomonas fluorescens WH6]
          Length = 455

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 126/370 (34%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++    D  F + E   
Sbjct: 111 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGDTPFFVIEADE 167

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 168 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +   + +        ++T           +Q++      + S  EV  +G++  +V   
Sbjct: 228 TEPALQRVIEMGCWTPVQT-----TGAGGQWQVKLL--SEDGSRFEVLFEGQAQGIVEWD 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L+TL     +       I ALS F   +   +R     +    T+ D+ +
Sbjct: 281 MTGQHNVANALVTLAAARHVGVVPSMGIAALSAFKSVK---RRMEKVADVNGITIYDD-F 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IA++    E    S     H D     S+ +    
Sbjct: 337 AHHPTAIATTLDGLR--KRVGDAPIIAII----EPRSNSMKLGAHRD-GLPESVNDADQA 389

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ +  +      ++     ++++G+  +++     G  VVV  SN  GF  
Sbjct: 390 VWYAPPNLGWDLPGIAALC--TVPSTVRDSIEGIIEYVKQQAKPGTHVVVM-SNG-GFGG 445

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 446 LHGKLAEALK 455


>gi|291518134|emb|CBK73355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 429

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 111/350 (31%), Gaps = 55/350 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  I ITG+ GK+TT  +L   L +  K     G+    I     +          +F
Sbjct: 103 YGAQTIGITGTKGKSTTSSLLYHILKTCGKDVLFGGNIGLPIFD---ITDQIHPRTIIVF 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L    +      P  A++  +   HL ++  +E+   AK  ++        +F 
Sbjct: 160 ELSCHQLEYAHY-----SPSKAILLNLYEDHLDHYGTVEKYWYAKQNLYRNQGYCDFLFC 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D      L  +            G+ K A  +++        S  E ++ G ++    
Sbjct: 215 NPD-----FLPKQ------------GECKAAIIKVK--TGDLPFSSFE-EIPGVTLR--- 251

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N      +           + AL+ F        R      +      D+S
Sbjct: 252 ---GTHNLFNTAFVYDVCRRYDISDKEFMDALATFKTLA---HRLEFIGTKDGVDYYDDS 305

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +    S  +AI  +             +LG M    +        L E L    + H+ 
Sbjct: 306 ISTTVESCISAIKAIPNAG-------TILLGGMDRGIDYDP-----LVEFLQTRTLEHII 353

Query: 406 LSGFHVLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L       L + L          HVHY E +     F++ +   G  V++
Sbjct: 354 LMYDSGKVLLEKLQAVATPEFMEHVHYIEDLASACAFVKENASKGTAVIL 403


>gi|148556850|ref|YP_001264432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
 gi|148502040|gb|ABQ70294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
          Length = 495

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 96/282 (34%), Gaps = 21/282 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G+ +    +     S  +PV    ++         A        ++ ITG+ GK+TT  +
Sbjct: 114 GVPLNRHPIAGHAASFGVPVISDIELFAQARASLPAH------KVVGITGTNGKSTTTAL 167

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +        G+    I     L          + EL    +     +T  +   
Sbjct: 168 IAHILETAGVPTLMGGNIGLPILGRDPL----PAGGVYVLELSSYQID----ITQSLDCD 219

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T I P HL  + G    A++K  +F    K  ++    D+   E++ A  +     
Sbjct: 220 VAVLTNITPDHLDRYDGFAGYAASKLRLFTMQGKGISVIAGDDEPSVEIINALRNRPIHP 279

Query: 246 TIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              S+  ++  + +  + + +       M   LQG+  E      G H AQN  + +   
Sbjct: 280 ASLSWATTEQGEQRPVISRVEMGRVMRVMSSSLQGQ--ENWPALQGPHNAQNAALAIETC 337

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            +L                  G   R +    +     +++S
Sbjct: 338 RLLGLSYSQI---DQGLRSYPGLPHRMQRVAEKRGVLFVNDS 376


>gi|116071267|ref|ZP_01468536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
 gi|116066672|gb|EAU72429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
          Length = 462

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 117/378 (30%), Gaps = 43/378 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV+   +     +L        + +    ++ +A    +    + ITG+ GKTT   +L
Sbjct: 72  AVVIGPGIPWDHPTLE---ILRQEGVQVRGEIELAWDALNDIPWVGITGTNGKTTVTHLL 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----DFGIFELGMSHLGEIRFLTHLV 182
           +  L             N  +       ++        D+ + EL    +         +
Sbjct: 129 SHVLEQAG--LRAPMGGNMGVSAAEMALKIKTGDLLRPDWLVMELSSYQI----EAGPTL 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-A 241
            P I + TT+ P HL     +E   + K  +   L+++     N DD+     ++     
Sbjct: 183 APSIGIWTTLTPDHLERHGTLEAYRAIKRGL---LQRSSLAIFNGDDADLNAHRSSLKSG 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTL 300
           + ++T       + ADF +       +   ++ +  G           G H  QN L+  
Sbjct: 240 IWVQTATPCPDDQPADFWI------DDAGTIQARESGAMFPADALAMPGAHNRQNQLLVT 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +  + +   +    F     R +R     +     + ++S   N  +    +  +
Sbjct: 294 AAAIQIGLNAEQIAQGFRSFPGVPHRLERLGSTASAD---VFNDSKATNYDAAAVGLQAM 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G  + + G   + G+ +                  V L G     L   + +
Sbjct: 351 A-------GTVVVLAGGQTKRGDATGWLTE------LKSKACAVVLFGAGAEELDALIRQ 397

Query: 421 S---IHVHYSETMDGLFL 435
           S     VH    +     
Sbjct: 398 SDYQGQVHRCNDLKAAVA 415


>gi|30250149|ref|NP_842219.1| mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase transmembrane protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30139256|emb|CAD86129.1| mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 454

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 131/373 (35%), Gaps = 42/373 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  L     ++A+ G+ GKTTT  ML   L     +    IG    + G+   L  + 
Sbjct: 94  WLAQHLLHNRWVLAVAGTHGKTTTSSMLAWILEYAGLSPGFLIGGVPENFGLSARLGIIE 153

Query: 158 VDVDFG---IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +       + E            +  V  +P   V+  +   H   F  +  I      
Sbjct: 154 AEQTPSPFFVIEADEYDTAFFDKRSKFVHYQPRTVVLNNLEYDHADIFPDLAAIERQFHH 213

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW- 271
           +   + + G + +N  D+  + +  +        +  F            W+   EQ+  
Sbjct: 214 LIRIVPRNGLLVVNGQDTALQRVLNQG---CWTPVEQFDVDDG-------WQITMEQNES 263

Query: 272 MEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + V+ QG S  ++H   +G H   N L  L             I+ALS F   +   +R 
Sbjct: 264 LSVRFQGVSQGILHWELLGEHNCMNALAALAAARHAGVPAQLGIEALSRFKNVK---RRM 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQ 386
                     + D+ +  +P +++  ++ L   +  G+ R IAVL      M  +G    
Sbjct: 321 ELRGVINDIHVYDD-FAHHPTAIRTTLAGLR--AKIGQARIIAVLEPRSNTMK-LGVWQN 376

Query: 387 SFHIDLAEVLSLYNISHVWLS----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                     SL     ++      G+++ +   +L     +H+   +  +   I ++  
Sbjct: 377 DL------AASLDQADQIFCYAHQIGWNIDSALASLDDKTEIHH--DLTTMISAIAATAH 428

Query: 443 DGDVVVVKSSNSC 455
            GD +++  SN  
Sbjct: 429 PGDHILIM-SNGS 440


>gi|326564537|gb|EGE14763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 46P47B1]
 gi|326565722|gb|EGE15885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 12P80B1]
 gi|326574566|gb|EGE24506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis O35E]
 gi|326576146|gb|EGE26061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis CO72]
          Length = 466

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 124/353 (35%), Gaps = 37/353 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +  IPV    DV   ++ L      + +   IIAITGS  K+T   ++         
Sbjct: 80  AAKAQGIPVIS--DVQLFIDTLKARDLTQATNTPIIAITGSNAKSTVTTLVGEMAKHAGM 137

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+        LT+  M    D  + EL    L  I  L        A I  ++  
Sbjct: 138 IVGVGGNIGTPALELLTIQNM----DLVVLELSSFQLEHISNLAA----QGATILNLSAD 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYSF 250
           HL    G+ +  + K  IFE  +   T  +  DD+         L + +    I T  S 
Sbjct: 190 HLDRHDGMVDYLAQKLRIFENCQ---TAIICQDDANLAKQCLTTLTSVAPNHTIITTNSL 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTA 308
              + ADF L       +   M +  Q   +  +H     G H   N L  L + +    
Sbjct: 247 LSHQTADFYLFD-----DGDGMALYHQKNKLLPIHQLKIKGKHNLLNALSALALGTAANL 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F   +G   R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 302 PMDAMLDTLKTF---KGLPHRCEYIDDIDGKAYFNDSKGTNIGSTIAAIDGLGTV--YGI 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                +LG + +  + S     +L+  +  + +  V+L G     ++  L + 
Sbjct: 357 SSLALILGGLGKGQDFS-----ELSAYVMQW-VDSVYLIGQDAPIIEQDLLKG 403


>gi|301167446|emb|CBW27028.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 448

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 120/347 (34%), Gaps = 42/347 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFG 163
           SK  II++TG+ GKTTT  ++ +       +    G+    +       L+    +    
Sbjct: 111 SKTKIISVTGTNGKTTTVTIIDLLARGAGCSSFLGGNIGTPLATYALEVLSSKRSEASLI 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL    L  +       +  +A I  I+  H   +  + + A AK  I + L+ +  I
Sbjct: 171 TLELSSFQLESMDTF----KSDVAAILNISANHGERYERVSDYARAKFSIADNLDDSDNI 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F+  D   FE     S  L    +      ++AD      ++                  
Sbjct: 227 FV-GDLGGFEKEFNPSCNLIKLEV-----PRSADIFSGNVRES----------------- 263

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H   N+     ++  +  D    ++ L  F        R +   ++    + +
Sbjct: 264 -FQLIGEHNLSNLNFATKLLETVGVDWKNGLEQLKEFQGVSY---RLQKRPSREGLYIFN 319

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++ + N    +A+++ L       +   I  +LG   ++          L       +IS
Sbjct: 320 DAKSTN---WEASLTALKACEFSYKNLPISLILG--GKLRGHGDQLESKL--DAHKESIS 372

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+L G     L +      +  Y +T+D +   I   +  G V++ 
Sbjct: 373 KVFLYGESGKVLLEEFKEKFNCDYFKTLDEVIKNISVEVEKG-VILF 418


>gi|291457566|ref|ZP_06596956.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium breve DSM
           20213]
 gi|291380619|gb|EFE88137.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium breve DSM
           20213]
          Length = 512

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 110/333 (33%), Gaps = 38/333 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML   L  +    +YA  GS     G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLAHILVHTGADPSYAIGGSIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A    
Sbjct: 173 GHAGQG-DVLVAEADESDGSFAKY-----HPTIAIITNAEADHLDHYGDEAHYRAAFVN- 225

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---------NADFQLRKWK 264
                 TG + +  DD     +     A        +G +           A   +   +
Sbjct: 226 -HAGHATGHVVICADDPDALAVFQALPADVKAHTVVYGTTPIEQLPDLGGAAHVWISSEQ 284

Query: 265 QCSEQSWMEVQL---------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + L            +  V     G H A+N    +    +L      A +
Sbjct: 285 ETAGTGVERLTLHLPAAVTSADAVAQRVELKVPGIHNARNAAAAITAAVLLGVSPADAAQ 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+  F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AVGTFL---GAARRFQVHGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPQSTVRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                +   ++ F  + AE L+      V ++G
Sbjct: 399 --QPHLFSRTKFFAHEFAEALAK--ADDVIVTG 427


>gi|315149516|gb|EFT93532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0012]
          Length = 456

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTADDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|84490003|ref|YP_448235.1| hypothetical protein Msp_1211 [Methanosphaera stadtmanae DSM 3091]
 gi|84373322|gb|ABC57592.1| partially conserved hypothetical membrane-spanning protein
           [Methanosphaera stadtmanae DSM 3091]
          Length = 514

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 126/368 (34%), Gaps = 67/368 (18%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              I    IP+  V D+L              K  +I ITG+ GKTTT  +L        
Sbjct: 91  YHKIKKYGIPILTVKDILE---------IFEPKHPVICITGTNGKTTTTTLLKHIAYHAG 141

Query: 135 KT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVIT 190
                +  +G   N   +P   +R+  +++  I E G   + G +  L    +P + +IT
Sbjct: 142 LKPCEHNLMGLQGNTADIPPLQSRLNGNIN--ILETGTFGIKGSLEKLAKACKPDVGLIT 199

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HLS  S   + A  K E+ E L    T+ +N DD   E L  + +  G   + SF
Sbjct: 200 NITPDHLSENSSFLDYARVKGELVELLR-NKTLVINNDDPTIESLLKELNYEG--NLISF 256

Query: 251 GKSKNA-------------------------------------DFQLRKWKQCSEQSWME 273
           G   N+                                     D+         + +   
Sbjct: 257 GLDTNSNKTTLKQCFCGKKVQIKEFCGGVGVYECNCGLKYTKPDYLACNI--NDKHNQFI 314

Query: 274 VQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYR 331
           ++    +  E      G H   N +  + I    L    +T  +A+  F    GR ++  
Sbjct: 315 LKTPYNEEYEFKLGIYGIHNIYNAVGAIIIAHETLNISYETIKEAVKSFKGVGGRMEKIG 374

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            + N+     I   Y  NPA + + +  L     +  G  + V+    E G       +D
Sbjct: 375 ISHNKQ----IMVDYAHNPAGITSVLKELK----NAYGTIVDVITTSSESGIDGDKEILD 426

Query: 392 LAEVLSLY 399
            A   + Y
Sbjct: 427 CAAEHANY 434


>gi|33519614|ref|NP_878446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Blochmannia floridanus]
 gi|62900574|sp|Q7VQI9|MURD_BLOFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33517277|emb|CAD83661.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia floridanus]
          Length = 444

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 130/347 (37%), Gaps = 33/347 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A IIAITGS GK+T  ++++        +    G+    +     L+ +    +  
Sbjct: 102 REISAPIIAITGSNGKSTVTQLVSKMAKQAGWSVGVAGNIGVPV-----LSLLKKQYELY 156

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           + E+    L     +T+ +R   A I  I+  H+  +  G+EE   +K  I+     +  
Sbjct: 157 VLEISSFQLD----VTYSLRATAATILNISVDHMDRYPKGLEEYICSKKRIYHN---SYF 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N  D   + L       GI  +     SK+AD++L  +K     +W+    +     
Sbjct: 210 CVVNDSDPLTKPLLND----GIYHVSFSMNSKSADYRLEYYK---GNNWIVANGEYVLSC 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                       NML  L +  I+       I +L V     G   R++          I
Sbjct: 263 AELKINNCMNYMNMLSALALSDIVKIP---RIVSLQVLRFFSGLSHRFQLVYKNRNVCWI 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + K AI+  + I    +G    +LG     G+   +   +L+ ++  Y I 
Sbjct: 320 NDSKATNVGATKEAIN--NTIITLRDGNLHLLLG-----GDGKLANFFELSCLIKHYAI- 371

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           H++  G   + L  +      V  S  +      I   +   D+V++
Sbjct: 372 HLYCFGKDGVCLTQSGFN--DVFLSNNIIDAMYIISRRVQRKDIVLL 416


>gi|254253293|ref|ZP_04946611.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895902|gb|EAY69782.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 497

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 123/372 (33%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   L     D  F + E  
Sbjct: 141 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGISARLT----DSSFFVIEAD 196

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 197 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTN 256

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
                   L+          +  FG                 E     V  Q + + EV 
Sbjct: 257 G---RAGALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDE--RFAVYRQAERVGEVA 311

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+
Sbjct: 312 WQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGSIDGVTVYDD 368

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 369 -FAHHPTAIETTIAGLRARIGRQNSRILAVL----EPRSNTMKLGVMKAQLPASLTDADL 423

Query: 404 VWLSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L DAL P        + +  L   +  +   GD V+V  SN  G
Sbjct: 424 VFGYGAPTGRDALGWNLADALAPLGAKARAFDDLHLLVKAVVKAARPGDHVLVM-SNG-G 481

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 482 FGGVHQKLLDAL 493


>gi|316941823|gb|ADU75857.1| cyanophycin synthetase [Clostridium thermocellum DSM 1313]
          Length = 882

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 133/384 (34%), Gaps = 57/384 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               I+++TG+ GKTTT  ++   L+ + K      +    IG    L            
Sbjct: 478 HSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFIGDECVLKGDNTGPTSAAM 537

Query: 166 ELGMSHL----------GEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
            L    +          G +R         + VIT IA  HL     + +E++A AK+ +
Sbjct: 538 VLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHLGIDGMNTLEDLAFAKSLV 597

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-------------NADFQL 260
            E ++  G   LN DD F      ++       I  F K+               A +  
Sbjct: 598 VEAVKPGGYSVLNADDKFVRYFMERAKG----EIILFSKNNSNPVVKEHMQKGGKALYVD 653

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +           EV +  K + + + G+     +N L     +  L   ++   K L+ F
Sbjct: 654 KDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYGLNLSIEAIRKGLATF 713

Query: 321 HP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           +P  E    R+       F  ++D  Y  NPA     +  L +I      R + V+G   
Sbjct: 714 NPDMESNPGRFNIVDMGDFKVMLD--YGHNPAGYLEVMKFLDKIDAK---RLVGVIGMPG 768

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDAL------PRSIH 423
           +  +LS        E+ S    S +++           G     L DA+        ++ 
Sbjct: 769 DRDDLSI---YKAGEICSKC-FSKIYIKEDSDLRGREPGEVAGILYDAVISSGTKKENVE 824

Query: 424 VHYSETMDGLFLFIQSSLVDGDVV 447
           + YSE    L   +  +   GD V
Sbjct: 825 IIYSEDR-ALEKALLDA-QPGDFV 846


>gi|281418842|ref|ZP_06249861.1| cyanophycin synthetase [Clostridium thermocellum JW20]
 gi|281407926|gb|EFB38185.1| cyanophycin synthetase [Clostridium thermocellum JW20]
          Length = 882

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 133/384 (34%), Gaps = 57/384 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               I+++TG+ GKTTT  ++   L+ + K      +    IG    L            
Sbjct: 478 HSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFIGDECVLKGDNTGPTSAAM 537

Query: 166 ELGMSHL----------GEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
            L    +          G +R         + VIT IA  HL     + +E++A AK+ +
Sbjct: 538 VLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHLGIDGMNTLEDLAFAKSLV 597

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-------------NADFQL 260
            E ++  G   LN DD F      ++       I  F K+               A +  
Sbjct: 598 VEAVKPGGYSVLNADDKFVRYFMERAKG----EIILFSKNNSNPVVKEHMQKGGKALYVD 653

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +           EV +  K + + + G+     +N L     +  L   ++   K L+ F
Sbjct: 654 KDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYGLNLSIEAIRKGLATF 713

Query: 321 HP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           +P  E    R+       F  ++D  Y  NPA     +  L +I      R + V+G   
Sbjct: 714 NPDMESNPGRFNIVDMGDFKVMLD--YGHNPAGYLEVMKFLDKIDAK---RLVGVIGMPG 768

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDAL------PRSIH 423
           +  +LS        E+ S    S +++           G     L DA+        ++ 
Sbjct: 769 DRDDLSI---YKAGEICSKC-FSKIYIKEDSDLRGREPGEVAGILYDAVISSGTKKENVE 824

Query: 424 VHYSETMDGLFLFIQSSLVDGDVV 447
           + YSE    L   +  +   GD V
Sbjct: 825 IIYSEDR-ALEKALLDA-QPGDFV 846


>gi|328468646|gb|EGF39640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus MTCC 5463]
          Length = 392

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 114/352 (32%), Gaps = 41/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S A  + +TGS GKTTT  +    L             +G+    I   +  A      D
Sbjct: 44  SDAPYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---D 100

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  +  +   V   + +   +   HL      E   +AK  +        
Sbjct: 101 ILVVEISSFQLLGVTDIDPKVAAIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQNSDD 157

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               NYD    + + AK   +    + +F +   +AD+ +      S+          K 
Sbjct: 158 YFIANYDQ---KDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLESQ--------NEKI 206

Query: 281 MEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           M++V     G H  QN L+ + I  ++ AD D     LS F    G   R +        
Sbjct: 207 MKIVDIKLPGIHNLQNSLVAIAISKVMGADNDDIAAVLSTFT---GAKHRLQYVTTLDGR 263

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S + N  +   AI    +      G            G        DL  +    
Sbjct: 264 KVYNDSKSTNIEAATVAIPSFKEPEVLIAG------------GLDRGFLFDDLVPLFKK- 310

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 311 HVKSIVLYGETKYLLADAARKAGIKDIVIVNTLQEAVPRAYELSEPGDVILF 362


>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 680

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 142/427 (33%), Gaps = 56/427 (13%)

Query: 12  QAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
             +    I         ++GI+ D  ++   + F    G   +G      A +  A   V
Sbjct: 108 AGVDARWIALEDDEDVEISGIANDVNALLSGDLFVC--GSAREGGAMEDAAREAVAAGAV 165

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLT 127
                 A  G   +P+  V+DV  AL  +A           T IA+TGSVGKTTT  ++ 
Sbjct: 166 AVVSERAIEGLADVPIAVVEDVDEALADIARVFYGDPSKALTAIALTGSVGKTTTSYLVK 225

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM------------------PVDVDFGIFELGM 169
                       +GS  N++G  L L                            + E+  
Sbjct: 226 AVFEEADIRMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQLTAGIADNGAQAAVMEVSA 285

Query: 170 SHLGEIRFLTHLVRPHIAVITT-------IAPAHLSNFSGIEEIASAKAEIFEGLE--KT 220
             +   R  T  +   I  +T+       ++           E +S  AE+F+ LE  +T
Sbjct: 286 EQV--RRKATRGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEYSSHVAEVFKALEDAET 343

Query: 221 GTIFLN---YDD----SFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWKQCSEQ 269
               +N    DD     + EL K  +  +      ++         AD    +      +
Sbjct: 344 QRAVINVDAIDDNDKTPYHELCKEHAKGVPQ---LTYSVDPENPNGADVYPARVDYSLFE 400

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + + +     ++EVV   +G HM   +     I       +D     L       G   R
Sbjct: 401 TAVSLSTPAGNVEVVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAGLEATDSIPG---R 457

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                    F+++ +S N  P ++++ I     +      R I V+G   EM E  +   
Sbjct: 458 MELVDAGQDFSVLVDSAN-TPEAIRSVID---SVKATNCRRVITVIGCEGEMAESERGQR 513

Query: 390 IDLAEVL 396
             + + +
Sbjct: 514 AVIGKTV 520


>gi|86605662|ref|YP_474425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. JA-3-3Ab]
 gi|118595697|sp|Q2JVR9|MURD_SYNJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86554204|gb|ABC99162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           JA-3-3Ab]
          Length = 469

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 116/355 (32%), Gaps = 41/355 (11%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   VVV+  +      L          +  + +  +A         + ITG+ GK+TT 
Sbjct: 62  GVKQVVVSPGIAWDHPLL---QEARRQGIEVVGEAELAWPFLEHLPWVGITGTNGKSTTT 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFGIFELGMSHLGEIRFL---T 179
            ++              G+    +  V L   +      + + EL    L   R L   +
Sbjct: 119 ALVAEMFKVAGLEGIPCGNIGLPLSQVALETWQGRRQPAWIVAELSSYQLEASRHLMQSS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P I V TT  P HL     +E  A  KA +   L++     +N +D +      + 
Sbjct: 179 PGSPPRIGVWTTFTPDHLERHGTLERYAGFKARL---LQRAQWRVVNGEDPYL----FRR 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EVVHHGIGYHMAQN 295
                 T +   +   AD  LR            + +QG+++    +      G H  QN
Sbjct: 232 RQDWENTYWVSLQDPQADVFLRGS---------TLYIQGEAVAELEDFAERCPGSHNLQN 282

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMK 354
           +L+      +          A+  F     R +R  +  +       +++S   N  +  
Sbjct: 283 LLLAAAAAHLAGIPNTAIQGAIRSFAGMPHRLERVAQIQVGSTPIRFVNDSKATNYEAGW 342

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A++ LS          I + G   + G+ S          L    ++ V L G 
Sbjct: 343 VALNALS-------PPIILIAGGRAKQGDPSAWLR------LIQAKVARVLLIGE 384


>gi|239832311|ref|ZP_04680640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824578|gb|EEQ96146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           intermedium LMG 3301]
          Length = 467

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 129/384 (33%), Gaps = 53/384 (13%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   + +  +
Sbjct: 82  PHWTVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGTNGKSTTTALIAHIIKASGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DMQLGGNIGTAIL----TLEPPQANRFYVVECSSYQID----LAPSLNPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-----SF 250
           HL     +E  A+ K  +      + T  +  DD + E +  + +  G+  +        
Sbjct: 194 HLDRHGSMENYAAIKERLVA---ASDTAIVGVDDQYCEAIADRLYRDGVHVVRISKEKQL 250

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           GK   AD     W Q  E   +       S+E +    G H AQN L  +     +   +
Sbjct: 251 GKGYFADGAKLLWAQDGEVDEI------ASLEGIGSLRGAHNAQNALAAIAACLSVGLSL 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L+ F    G   R     ++G    +++S   N  +   A+S   Q        
Sbjct: 305 EEIHAGLNSF---PGLAHRMEQVGHRGKVLFVNDSKATNAEATAPALSSFPQ-----NIY 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSET 429
            IA  G + + G         +A + + +  I+  +L G         L  +     S+T
Sbjct: 357 WIA--GGVPKAG--------GIASLAAFFPRIAKAYLIGEAAAQFAATLGDAAPFEISDT 406

Query: 430 MDGLFLFIQSSLVDGD----VVVV 449
           +            +      VV++
Sbjct: 407 LAVAVEHAARDAGNDAAPEPVVLL 430


>gi|239813953|ref|YP_002942863.1| UDP-N-acetylmuramate [Variovorax paradoxus S110]
 gi|239800530|gb|ACS17597.1| UDP-N-acetylmuramate [Variovorax paradoxus S110]
          Length = 470

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 116/358 (32%), Gaps = 23/358 (6%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  +     ++A+ G+ GKTTT  ML   L    K     +G      GV   L    
Sbjct: 102 WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWVLEQGGKAPGFLVGGVPLDFGVSARLGNGS 161

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                 + E            +  V  RP  AV+  +   H   F  +  I      +  
Sbjct: 162 A----FVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLVR 217

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +  TG + +N  +   + + A+     +    + G +         W+        +V 
Sbjct: 218 TVPGTGRLVVNATEESLQRVLAEGCWSELARFGAGGPNSG-------WQARGTHDAFDVL 270

Query: 276 LQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            QG+++  V     G H   N L  +     +      A +AL  F     R +      
Sbjct: 271 RQGEAVGRVEWELSGLHNQMNALAAIAAAEHVGVAPADAARALGSFRSVRRRMELRGSVE 330

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             G    + + +  +P +++  +  L +       +G RI       E    +    +  
Sbjct: 331 RSGGAITVYDDFAHHPTAIRTTLDGLRKKLDDAGRQGERIL---AAFEPRSNTMKLGVMA 387

Query: 393 AEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           A++   L   ++S    +G    A     P       +  ++ L   I ++   GD +
Sbjct: 388 AQLPWSLEAADLSFCHTAGLDWDAAAALAPMGERAQVAGAIEPLVAQIVAAARPGDHI 445


>gi|158834082|gb|ABW81846.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 147 IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           I +   L+ M      F   E+    L  ++     +    +V + ++  HL     +  
Sbjct: 14  IEIQQILSNMLTHKATFAAMEVSSHAL--VQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---SHALGIKTIYSFGKSKNADFQLRK 262
              AK  +F   E      +N DD   +    +   + A+        G  K A    +K
Sbjct: 72  YEIAKKSLFLDHESKNH-IINVDDEVGQRWLPELPNAVAVSTSHQIPSGL-KGAWLSAQK 129

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +     + +         E+    +G     N+L+TL  +  L   ++  +KA S   P
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLNALLKAASKLQP 189

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR + ++     G  T+I + Y   P ++K     L+    H +G+   + G   +  
Sbjct: 190 IPGRMEVFKKV---GRPTVIVD-YAHTPDALK---QALAASRMHCQGKLWCLFGCGGDRD 242

Query: 383 ELSQSFHIDLAEVLS 397
           +  +     +AE L+
Sbjct: 243 KGKRPLMGKIAETLA 257


>gi|160935708|ref|ZP_02083083.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441452|gb|EDP19162.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
          Length = 452

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 121/371 (32%), Gaps = 36/371 (9%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  VDD    +      A       + AITG+ GKTTT  +    L +  +    +G+  
Sbjct: 85  VAVVDDAKIPILGEIELAYQCGLGKLAAITGTNGKTTTTALTGEILKARYEETFVVGNIG 144

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +       +  M  D    + E+    L  I       RP+++ I  I P HL+    +E
Sbjct: 145 DPYTSK--VLEMTEDSVT-VAEVSSFQLETI----MDFRPNVSAILNITPDHLNRHGTME 197

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL---R 261
                K  +     K   + LNYDD        ++  L  + I+   +    D       
Sbjct: 198 NYIRIKECVTLNQTKEDAVVLNYDDPVLREF-GQNPELKPRVIWFSSREMLKDGFCMDGD 256

Query: 262 KWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               C      + V +           +G H  +N +    I   +   +    + +  F
Sbjct: 257 NIVYCQNGRQTVVVNVHD------MQLLGRHNYENAMAAAAIALEMGVPMSDITRVIEGF 310

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           HP E    R      +      ++S   NP    AAI  L  +     G  + + G   +
Sbjct: 311 HPVE---HRIEFVRERTGVRYYNDSKGTNPD---AAIQALRAMP----GPTLLIAGGYDK 360

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQ 438
             E  +     ++E      + ++ L G     + +   +       Y+E M        
Sbjct: 361 NSEYDEW----VSEF--EGKVRYLVLIGQTRDKIAECAKKHGFTEIMYAEDMQEAVQVCA 414

Query: 439 SSLVDGDVVVV 449
                GD V++
Sbjct: 415 VYADIGDYVLL 425


>gi|149179566|ref|ZP_01858100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planctomyces
           maris DSM 8797]
 gi|148841594|gb|EDL56023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planctomyces
           maris DSM 8797]
          Length = 269

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +I +TGS GK+TT  M+   L +        G+    +   L         D+ + E
Sbjct: 119 PGRVIGVTGSNGKSTTTAMIHSILKAAGHRCWLGGNIGISLLPELD---QIQSEDWVVLE 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +  +     P IAV+T  +P HL     +E    +K  I     ++    LN
Sbjct: 176 LSSFQLEALNRI--QASPQIAVVTNFSPNHLDWHQNLEHYRQSKQTILRWQTESDVAVLN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN 255
            DD   +  +         +I +FG   +
Sbjct: 234 QDDPELQTWRTA------GSILTFGTHSD 256


>gi|158834104|gb|ABW81857.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 19/263 (7%)

Query: 138 ACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A   +  + I V  TL   +    +F   E+     G ++     +    AV T ++  H
Sbjct: 5   ATENTTGSAIDVQKTLNHFVMQGANFAAMEVSSH--GLVQHRVTALPFTAAVFTNLSRDH 62

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    +AK ++F          +N DD          H L      S      A
Sbjct: 63  LDYHGDMARYEAAKWQLFS-THHAKEKIINADDQVGRRWL---HQLPHAVAVSMEGKIPA 118

Query: 257 DFQLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           D++ R          ++   +          +V   +G     N+LM L  +  L   + 
Sbjct: 119 DWKGRWLETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLK 178

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  +S      G   R          T+I + Y   P +++ A   L+    H +G+ 
Sbjct: 179 KLVATVSQLQAVCG---RMEVFNALDRPTVIVD-YAHTPDALEKA---LAAARLHCKGQL 231

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
             V G   +  +  ++    +AE
Sbjct: 232 WCVFGCGGDRDKGKRALMGGIAE 254


>gi|29375575|ref|NP_814729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis V583]
 gi|227555103|ref|ZP_03985150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257418583|ref|ZP_05595577.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|30179794|sp|O07108|MURD_ENTFA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29343036|gb|AAO80799.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis V583]
 gi|227175771|gb|EEI56743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257160411|gb|EEU90371.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|315168041|gb|EFU12058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1341]
 gi|315574263|gb|EFU86454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309B]
 gi|315581582|gb|EFU93773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309A]
          Length = 456

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDNLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|219871375|ref|YP_002475750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Haemophilus parasuis SH0165]
 gi|219691579|gb|ACL32802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Haemophilus parasuis SH0165]
          Length = 462

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 108/318 (33%), Gaps = 29/318 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           DF + E            +  V   P   +I  I   H   F  ++ I      +   + 
Sbjct: 156 DFFVIEADEYDSAFFDKRSKFVHYNPKTLIINNIDFDHADIFDDLKAIQRQFHHLIRTMP 215

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQ 277
           + G I     D   +           + I      ++ D+        S+ S   +   Q
Sbjct: 216 QNGCILSATSDENVQNTLKMGCYSEQQFI-----GQDQDWYAE--PLSSDYSHFAIYHKQ 268

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            K+ EV  + +G H   N LM +         V+ A   L+ F       +R        
Sbjct: 269 QKAGEVEWNLLGAHNMHNGLMAIAAAHHAGVSVEQACLGLNSFINAN---RRLEVKGEVN 325

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--H-IDLAE 394
             T+ D+ +  +P ++ A I  L       E R +AVL    E    +     H  ++A 
Sbjct: 326 GITVYDD-FAHHPTAILATIDALRG-KVGKEQRILAVL----EPRSNTMKMGVHKEEIAP 379

Query: 395 VLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            L   +   V+      + V  + DAL +     +S ++D L   I       D ++V  
Sbjct: 380 SLKDADAVFVYQPDTIPWQVSTITDALSQ--PAQWSASLDELVELIVKEAKPTDHILVM- 436

Query: 452 SNSCGFYRLINLLLEEFP 469
           SN   F ++   LLE  P
Sbjct: 437 SNG-AFGQIHQKLLERLP 453


>gi|326402233|ref|YP_004282314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           multivorum AIU301]
 gi|325049094|dbj|BAJ79432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           multivorum AIU301]
          Length = 461

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 103/293 (35%), Gaps = 25/293 (8%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + V     A++ +  +P+F   ++L  A+     +AR       + ITG+ GK+TT  +
Sbjct: 81  ALPVPHPEAAAVMARGVPIFTDAELLFRAVRDSGSSARF------VGITGTNGKSTTTAL 134

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+      A  G+        L L R+  D    + E+    L     + ++ R  
Sbjct: 135 LAHILADAGIEVAAGGNLGP---AALALPRLGDD-GVYVLEMSSYML---ERIVNM-RFS 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              +  + P HL     +    +AK+ +F G E         DD+    +  +    G +
Sbjct: 187 AGAMLNLTPDHLDRHGNMAGYEAAKSRLFVGQEAGDVAVFGIDDAATAAMATRFED-GKR 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I      + AD   R  K       +        ++      G H AQN      +   
Sbjct: 246 RIVRISGCQRADIFARGRKLVDHSGVI------ADLDAAAALPGTHNAQNAAAAAALALA 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           L    +   +A+  F    G   R R   +    T ID+S   N  S   A+ 
Sbjct: 300 LGVPREVIGRAMVSF---PGLPHRQRVVASVAGVTFIDDSKATNADSAARALD 349


>gi|124024734|ref|YP_001013850.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           NATL1A]
 gi|166224715|sp|A2BZC5|MURC_PROM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123959802|gb|ABM74585.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. NATL1A]
          Length = 494

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 137/383 (35%), Gaps = 45/383 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLA 154
           ++  + A L  +   I ++GS GKTTT   +T   S   K+  A IG          +  
Sbjct: 115 HRSEILAFLIEEKKSIIVSGSHGKTTTSTYITTLFSYANKSPTAIIGGIVPLYKSNYSFG 174

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +     +F I E   S    ++F      P+I +IT +   H+ ++  +E++     +  
Sbjct: 175 K----SEFLIAEADESDGSLVKF-----NPNIGLITNLELEHVDHYLDLEDLIETMKQFA 225

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  E    +  N+D          S    I+ I       N DF L   +    +   E 
Sbjct: 226 QKCE---CLITNFDCDNLRANIHGSKWFSIQKII------NIDFALIPKESNGCEIIAEY 276

Query: 275 QLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             + K ++V+     G H   N    +    +         K +        R +     
Sbjct: 277 YEKEKFIDVIKIPVPGIHNLSNAAAAIAACRVAGILFKDIKKGIEKLKLPSRRFEFKGLW 336

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLS-------QISPHGEGRRIAVLGDMCEMGELSQ 386
            N+    LI E Y  +P+ + AAIS+ S       ++S     R + +          ++
Sbjct: 337 RNR----LIVEDYAHHPSEIDAAISIASTIIETKHKLSKILPRRIVTIF--QPHRYSRTK 390

Query: 387 SFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLF 434
            F  + A+ LS          Y+     + G +  ++   L +   ++ ++  +    L 
Sbjct: 391 KFQKEFAKTLSQSDLVFITPIYSAGEDKIEGINNKSIGHELKKIKPNLEIYTPDNNQNLI 450

Query: 435 LFIQSSLVDGDVVVVKSSNSCGF 457
             I+   ++ D++++  +     
Sbjct: 451 KLIKEKTLENDLILIMGAGDINL 473


>gi|21232719|ref|NP_638636.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767206|ref|YP_241968.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114532|gb|AAM42560.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572538|gb|AAY47948.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 452

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 128/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG     D+  +      + S  
Sbjct: 208 LVRTVPARGRLIVNGEDARLAEVLAMG---CWTPVERFGFDPALDWSAQLL--ADDGSRF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G+ + +V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGEEIGQVQWPLLGRHNVLNGLAALAAVQAVGVDPVTVMPALARFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
                   T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VLGQAQGITVYDD-FAHHPTAIA---TTLQGLRAKVGTARVLV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P    V    H ++ +D L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGQAHVAQDVDTLLRMLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|50955151|ref|YP_062439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leifsonia
           xyli subsp. xyli str. CTCB07]
 gi|62900514|sp|Q6AE62|MURD_LEIXX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50951633|gb|AAT89334.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 517

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 73/393 (18%), Positives = 124/393 (31%), Gaps = 44/393 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                 IPV+G  ++   L           S A  I +TG+ GKTTT ++    L +   
Sbjct: 104 WADQQGIPVWGDIELAWRLRDKTAPPGSGNSPADWICVTGTNGKTTTVQLTATMLLAGGS 163

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAP 194
             A  G+    +   +   R P   D  + EL    L  I R     V P+ A    IA 
Sbjct: 164 RVAPCGNIGVAVLDAI---RDPQGFDVLVVELSSYQLHWINRNAGGEVSPYAAACLNIAD 220

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS- 253
            HL     +E  A+AKA+++E          N  D     +  ++  +       FG   
Sbjct: 221 DHLDWHGSLEAYAAAKAKVYEN--AQVACVYNRADEATLRMVEETEVVEGARAIGFGLDV 278

Query: 254 -KNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +DF +     C          S +E+    +  E        H+  N+L    +   
Sbjct: 279 PGPSDFGIVDGILCDRAFLDDRLHSAIELTTLEELREAGLAAP--HIVANILAASALARA 336

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +       LS F        R      +   + +D+S   NP +  A++     +  
Sbjct: 337 YGVEPWVVRDVLSAF---RLDAHRIELVRIEAGVSWVDDSKATNPHAADASLRAYPSV-- 391

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
                 + V+G +             +    +   +    L G     L+ A  R     
Sbjct: 392 ------VWVVGGLF----KGVDLDGLVKRHAAR--LRGAVLIGADRDLLRSAFQRHAPGL 439

Query: 426 YSETMDG---------LFLFIQSSLVDGDVVVV 449
               +D                + + DGD V++
Sbjct: 440 PVVEVDADETEHVMPTAVRLAAALVRDGDTVLL 472


>gi|237785341|ref|YP_002906046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758253|gb|ACR17503.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 489

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 126/394 (31%), Gaps = 52/394 (13%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 IPV G  DV  A        R     T +A+TG+ GKTT   ML   +      
Sbjct: 94  DAQEQGIPVIG--DVELA-WCADRDGRFGEPRTWLAVTGTNGKTTATSMLASMMVESGAA 150

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+    +G  LT       V   + EL    L      +  + P   V+  +A  H
Sbjct: 151 AEAVGNIGVAVGTALT---QTPRVSVMVAELSSFQL----HWSPTLTPDAGVVLNLAEDH 203

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG---------IKTI 247
           +     ++  A+ KA ++ G      I +N DD        +   L           + +
Sbjct: 204 IDWHGSMDAYAADKARVYRG----SVIVVNADDERVCREAERYMELSSTSSSGDTPARRV 259

Query: 248 YSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV--VHHGIGYHMAQNMLMTLGIVS 304
             F   +    Q+     +  +++ +    +G  +         G     + L    I  
Sbjct: 260 IEFTMGEPGAGQVGVIDGRIVDRACVPAHSEGVDIADATRISPPGPAGVADALAATAIAR 319

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               + D  ++ALS F  ++    R +     G    ID S   NP +  AA+S +    
Sbjct: 320 SQGVEPDAIVRALSSFVVEK---HRGQVVYEAGDIRWIDNSKATNPHATDAALSAVESC- 375

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
                  + + G   +  ++    H       +   IS   + G     ++ +L      
Sbjct: 376 -------VWIAGGQLKGAQIDDLIHK------NADRISAAVVLGQDREIIRQSLATIHPR 422

Query: 422 IHVHYSETMD------GLFLFIQSSLVDGDVVVV 449
           I +    + D                  GD V++
Sbjct: 423 IPLTVITSTDPVIAMNEAVQAASRLAQPGDTVLL 456


>gi|33863701|ref|NP_895261.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9313]
 gi|60390535|sp|Q7V5V5|MURD_PROMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33635284|emb|CAE21609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 460

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 108/349 (30%), Gaps = 39/349 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA R  S    IAITG+ GKTT   +L   L S        G+  +         R
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGNVGHAAAEVALKWR 157

Query: 156 MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            P     D+ + EL       I     +  P + + T + P HL     ++   + K  +
Sbjct: 158 QPNAQRPDWLVMELSSYQ---IEAAPEIA-PRMGIWTNLTPDHLERHGTLDAYRTIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK---SKNADFQLRKWKQCSEQS 270
              LE++     N DD        +S       + S G    +  ADF +       E  
Sbjct: 214 ---LERSEIRIFNGDDPDLR--SQRSSWDKGLWVSSEGPGTANHRADFWIDAEGLVREPQ 268

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                             G H  QN+L+                   +      G   R 
Sbjct: 269 GALF------AASALAMPGQHNLQNLLLVTAAARQTGLPAKAI---EASLRSFPGVPHRL 319

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +    ++ ++S   N     AA   L  + P      + + G   + G+ S     
Sbjct: 320 EQLGHIQQMSVYNDSKATNYD---AACVGLKAVPPPA----VVLAGGQTKQGDASGWL-- 370

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLF 436
              + L   N   V L G     L++ +     S  +H    ++     
Sbjct: 371 ---KQLDQ-NACAVILFGAGASELQELIKTSGFSGELHCCSNLNAAVTL 415


>gi|227517916|ref|ZP_03947965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
 gi|227074670|gb|EEI12633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
          Length = 456

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 SIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALQGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|298252630|ref|ZP_06976424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
 gi|297532994|gb|EFH71878.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
          Length = 538

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 149/389 (38%), Gaps = 46/389 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           D HDF      K   +V        T  +    S +IP+    +V  A      + R   
Sbjct: 70  DIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPIMS--EVELAWRLRVPSQRTNK 127

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I +TG+ GKT+T EM +  L++       +G+    +    + A +  + D    E
Sbjct: 128 PAYWIGVTGTNGKTSTTEMTSAMLTACGLNAPAVGNIGKSV----SHAALECEHDALCVE 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A IT IA  HL    G+E  A  K+++F  ++K   +  N
Sbjct: 184 LSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSKVFNNVQK--ALVYN 237

Query: 227 YDDSFFELLKAKSH-ALGIKTI-YSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGK 279
             D     L   +  A G K I ++  + K+ +  ++          +  +   ++   +
Sbjct: 238 AQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVKDGWIVDNSGVAGGTKGTLKPIVE 297

Query: 280 SMEVVHH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             E+ H       +  H+  + L  L +   LT DVD++++AL  F P   R +     +
Sbjct: 298 LRELKHLCEPDGSVYPHLLADALTALALALGLTGDVDSSVRALREFAPGGHRIQTVATLM 357

Query: 335 NQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           ++          +D+S   N  +  A+++  +  S       IA        G L++  H
Sbjct: 358 SEDENPSHCIRFVDDSKATNAHAACASLASFANNSVVW----IA--------GGLAKGGH 405

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +      L+ I  V + G     + +AL
Sbjct: 406 FEDLIANQLHVIKAVVVIGIDQRPIVEAL 434


>gi|254428904|ref|ZP_05042611.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alcanivorax sp. DG881]
 gi|196195073|gb|EDX90032.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alcanivorax sp. DG881]
          Length = 450

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 97/271 (35%), Gaps = 23/271 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTTT  ML   L          IG    + GV   L   P    F + E  
Sbjct: 105 VLAVSGTHGKTTTSSMLAWILEYAGLNPGYLIGGVPGNFGVSARLGETP----FFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP   ++  +   H   F+ +  I +    +   +  TG + L 
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLIL- 219

Query: 227 YDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                 E    ++   G    +  FG+ +   ++L +     + S   V   G+ +  VH
Sbjct: 220 ---PHGETALEETLDRGCWSEVERFGEDEALGYRLDQ----DDGSVFTVLGNGQPVAQVH 272

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N +  L     +   +     ALS F   +   +R           + D+
Sbjct: 273 WDQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVK---RRMELRGEVAGVRVYDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +  +P ++   +  L      G+G+ +A++
Sbjct: 330 -FAHHPTAIATTLDGLR--RKVGDGKILAII 357


>gi|187479470|ref|YP_787495.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella avium 197N]
 gi|115424057|emb|CAJ50610.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella avium 197N]
          Length = 456

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            ++ ++A+ G+ GKTTT  ML   L     K    IG     + V    AR        +
Sbjct: 101 PQSHVLAVAGTHGKTTTSSMLAWILEEAGLKPNFLIGGVAPDLKVS---ARYQFGSRPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +   G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPSEGC 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + L       E + A+           FG          +     E     V   G+   
Sbjct: 218 VVLPTRSEALERVLARG---CWSRTVRFGAGG-----AWQAGPADELGAFTVLRDGRDQG 269

Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V   + G H   N L  L     +       I AL  F   +   +R           +
Sbjct: 270 MVRWSLGGEHNRMNALAALAAAENIGIPASDGIAALCRFGGVK---RRMELRGTINGVKV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P ++   I+ L      G  R +AVL      M  +G ++      LA    
Sbjct: 327 YDD-FAHHPTAIATTIAGLR--RQVGPARILAVLEPRSNTMK-LGTMAARLPQALA---- 378

Query: 398 LYNISHVWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V+  G      K AL         P        + ++ L   +  +   GD ++
Sbjct: 379 --GADQVFCFG--AQEGKHALGWNPTEVLSPLGERASSHDDLNALVNAVARAAAPGDHIL 434

Query: 449 VKSSNS 454
           V  SN 
Sbjct: 435 VM-SNG 439


>gi|170728148|ref|YP_001762174.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
 gi|169813495|gb|ACA88079.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
          Length = 461

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 130/371 (35%), Gaps = 26/371 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV       P    F + E  
Sbjct: 109 VLAVSGTHGKTSTSSMLAWILEYCGYEPGFLIGGVPQNFGVSARTGNSP----FFVVEAD 164

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P   VI  +   H   F  ++ I      +   +   G I   
Sbjct: 165 EYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKIIWP 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            +      +         +   S   +  A +  +      +    E+   G S   +  
Sbjct: 225 KESQAVTEVIKMGCWSEQEFYSSSADTGQAGWSTKLI--ADDGHQFELFFDGVSQGTLDW 282

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H  +N  M +     +      AI+AL  F P +   +R           + D+ 
Sbjct: 283 QLIGQHNVENATMAVAAARHVGVKPQAAIEALVKFQPPK---RRMELIGTVNGIEVYDD- 338

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHV 404
           +  +P ++   +      +  GEG+   +L        +    H D LA  ++L N +++
Sbjct: 339 FAHHPTAIATTLQ--GTRAKVGEGKITIILE--PRSNTMKSGVHKDTLAGSMALANEAYL 394

Query: 405 WLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           + +      L  A+ ++   + V Y   +D +   +      GD +VV  SN  GF  L 
Sbjct: 395 YQADNIDWDLASAMNKAELPVKVLY--EIDEIVETVAEKAESGDTIVVM-SNG-GFGGLH 450

Query: 462 NLLLEEFPAIQ 472
             LL++  A Q
Sbjct: 451 QKLLKKLNAKQ 461


>gi|325523967|gb|EGD02169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. TJI49]
          Length = 461

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 125/370 (33%), Gaps = 32/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I +    +   +   G I  N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGIGRIVTN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 + + A+        +  FG          +     ++ +    L  +  EV   
Sbjct: 221 GRADALDRVLARG---CWSEVERFGVDGGWQALPAEDGVPVDECFAVYSLGQRVGEVAWQ 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  +     +      A  +L+ F   +   +R     +    T+ D+ +
Sbjct: 278 VQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVK---RRMEVRGSVNGVTVYDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVW 405
             +P +++  I+ L         R +AVL    E    +    +  +++  SL +   V+
Sbjct: 334 AHHPTAIETTIAGLRARIGRQNTRILAVL----EPRSNTMKLGVMKSQLPASLADADLVF 389

Query: 406 LSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             G           L +AL P          +  L   +  +   GD V+V  SN  GF 
Sbjct: 390 GYGAPSGRDALGWNLGEALAPLGDKAQAFGDLHLLVKAVVEAARPGDQVLVM-SNG-GFG 447

Query: 459 ----RLINLL 464
               +L++ L
Sbjct: 448 GVHQKLLDAL 457


>gi|73542665|ref|YP_297185.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha JMP134]
 gi|118595678|sp|Q46WZ2|MURD_RALEJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72120078|gb|AAZ62341.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia eutropha
           JMP134]
          Length = 503

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 160/458 (34%), Gaps = 67/458 (14%)

Query: 33  DSRSIAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVNT----------DMVASIGS 80
           D+R       F    +    + G  F    +  G GLV ++           +++A+   
Sbjct: 37  DTREAPANLVFLQAELMSAEFVGGPFAESLLD-GIGLVAISPGLSPLEANTGELLAAARQ 95

Query: 81  LSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             IPV+G  ++   AL  L   +       ++AITG+ GKTTT  +    +    K+ A 
Sbjct: 96  RGIPVWGEIELFARALAHLQAESG--YAPKVLAITGTNGKTTTTALTGRLVERAGKSVAV 153

Query: 140 IGSYNNHIGVPLTL----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            G+ +      L+     A +P   D  + EL    L      TH + PH A +  +   
Sbjct: 154 AGNISPSALDKLSACIASATLP---DVWVLELSSFQL----ETTHTLAPHAATVLNVTQD 206

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI------KTIYS 249
           HL     +E  A++KA IF          LN +D     +     A         +T  S
Sbjct: 207 HLDWHGSMEAYAASKARIFGPAGTACVQVLNRNDRLTMDMARPGTAPVTFGTDLPETPGS 266

Query: 250 FGK--------------SKNADFQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIGYHM 292
           FG                  A+ + +  ++ ++ +  E   V+ +        H  G H 
Sbjct: 267 FGVLREGGMPWLVLAEPDSEAEGEGKPRRRKADATAQEAVPVRHKRLMPADALHIRGMHN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N +  L +   +   ++  +          G   R             D+S   N  +
Sbjct: 327 ATNAMAALALCRAIDLPLNALLHG---LREYRGEPHRVEWVATIDEVEYFDDSKGTNVGA 383

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             AA+S L +       R + + G   +  + S      LA  ++ Y    V L G    
Sbjct: 384 TVAALSGLDK-------RVVLIAGGEGKGQDFSP-----LAAPVAQY-ARAVVLIGRAAG 430

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+DAL      +  + T++            GDVV++
Sbjct: 431 ELRDALQGSGASLVDAATLEEAVNKAAELAEGGDVVLL 468


>gi|114331393|ref|YP_747615.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
 gi|114308407|gb|ABI59650.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
          Length = 862

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 127/401 (31%), Gaps = 61/401 (15%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+          ++  +IA+TG+ GKTTT  ++   L   +       +    +     
Sbjct: 454 EAIINHLFTQDEDARIPVIAVTGTNGKTTTARLIANILEHNRMRVGIACTDGVFVNNQCV 513

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                             DVD  + E   +  G +R         +AV+T I    HL  
Sbjct: 514 DTGDCSGPKSARNILFHPDVDAAVLE--TARGGILREGLGFDYCDVAVVTNIGRGDHLGL 571

Query: 199 -NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            N +  EE+A+ K  I E +  + G   LN DD     + +        ++  F  +   
Sbjct: 572 ANINTAEELAAVKRTIVENVNPEKGVAVLNADDPLVLGMASHCPG----SVTFFSCNSRH 627

Query: 257 DFQLR--------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              L                       +   + L    +++  +G+     +N++  +G 
Sbjct: 628 PVILEQRIQGKRVIYLEEQHIVVTEAGTERRISLSN--IQLTKNGMISFQIENVMAAIGA 685

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D       L+ F              N    TLI + Y  NP +M+A I  +  
Sbjct: 686 GLASGLDWSIICAGLADFVSDAQTVPGRFNLFNYREATLIAD-YGHNPDAMEALICAIDH 744

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISHVWLS----------GFHV 411
           I      +R  V+    +           +  +V        V L           G  +
Sbjct: 745 IPAK---KRTVVISAAGDRRNEDIRLQTQILGDV-----FDEVVLFQDKCQRGRADGEVL 796

Query: 412 LALKDALPRSIHVHYSETMDGLFLFI---QSSLVDGDVVVV 449
             L++ L  +  V     + G F  I    ++L  G++ ++
Sbjct: 797 GLLREGLENAKRVRKVSEIRGEFKAIDTALTNLEAGELCLI 837


>gi|125974689|ref|YP_001038599.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
 gi|125714914|gb|ABN53406.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
          Length = 882

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 133/384 (34%), Gaps = 57/384 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               I+++TG+ GKTTT  ++   L+ + K      +    IG    L            
Sbjct: 478 HSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFIGDECVLKGDNTGPTSAAM 537

Query: 166 ELGMSHL----------GEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
            L    +          G +R         + VIT IA  HL     + +E++A AK+ +
Sbjct: 538 VLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHLGIDGMNTLEDLAFAKSLV 597

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS------ 267
            E ++  G   LN DD F      ++       I  F K+ +        ++        
Sbjct: 598 VEAVKPGGYSVLNADDKFVRYFMERAKG----EIILFSKNNSNPVVKEHMQKGGKALYVD 653

Query: 268 -------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                       EV +  K + + + G+     +N L     +  L   ++   K L+ F
Sbjct: 654 KDSIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYGLNLSIEAIRKGLATF 713

Query: 321 HP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           +P  E    R+       F  ++D  Y  NPA     +  L +I      R + V+G   
Sbjct: 714 NPDMESNPGRFNIVDMGDFKVMLD--YGHNPAGYLEVMKFLDKIDAK---RLVGVIGMPG 768

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDAL------PRSIH 423
           +  +LS        E+ S    S +++           G     L DA+        ++ 
Sbjct: 769 DRDDLSI---YKAGEICSKC-FSKIYIKEDSDLRGREPGEVAGILYDAVISSGTKKENVE 824

Query: 424 VHYSETMDGLFLFIQSSLVDGDVV 447
           + YSE    L   +  +   GD V
Sbjct: 825 IIYSEDR-ALEKALLDA-QPGDFV 846


>gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T17]
          Length = 262

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 21/214 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-G 79
           +     V G+++ ++ ++P + F A+ G    G   +  A+ +GA  V+ +   VA I G
Sbjct: 42  VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAG 101

Query: 80  SLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV       G L  LA         + T+I ITG+ GKTTT  ++   L +  +  
Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 161

Query: 138 ACIGSYNNHI---------------GVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    +                +   LA M    VD  + E+    L   R     
Sbjct: 162 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR--VDG 219

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            R  +   T ++  HL     + +   AKA +F+
Sbjct: 220 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 253


>gi|161507313|ref|YP_001577267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus DPC 4571]
 gi|260102632|ref|ZP_05752869.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
 gi|172048225|sp|A8YUN8|MURD_LACH4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160348302|gb|ABX26976.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           helveticus DPC 4571]
 gi|260083556|gb|EEW67676.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
          Length = 459

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 114/352 (32%), Gaps = 41/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S A  + +TGS GKTTT  +    L             +G+    I   +  A      D
Sbjct: 111 SDAPYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---D 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  +  +   V   + +   +   HL      E   +AK  +        
Sbjct: 168 ILVVEISSFQLLGVTDIDPKVAAIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQNSDD 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               NYD    + + AK   +    + +F +   +AD+ +      S+          K 
Sbjct: 225 YFIANYDQ---KDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLESQ--------NEKI 273

Query: 281 MEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           M++V     G H  QN L+ + I  ++ AD D     LS F    G   R +        
Sbjct: 274 MKIVDIKLPGIHNLQNSLVAIAISKVMGADNDDIAAVLSTFT---GAKHRLQYVTTLDGR 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S + N  +   AI    +      G            G        DL  +    
Sbjct: 331 KVYNDSKSTNIEAATVAIPSFKEPEVLIAG------------GLDRGFLFDDLVPLFKK- 377

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 378 HVKSIVLYGETKYLLADAARKAGIKDIVIVNTLQEAVPRAYELSEPGDVILF 429


>gi|153006301|ref|YP_001380626.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
 gi|152029874|gb|ABS27642.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
          Length = 513

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 128/381 (33%), Gaps = 39/381 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPL 151
            AL +  +A R       + + G+ GKTTT  M+   L    +  +  +G          
Sbjct: 141 QALGEAFIAPR-----HGVVVVGTHGKTTTSAMMGFLLHHAGRDPSFLVGGVTRDFDSNY 195

Query: 152 TLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            L   P   V+   ++      G  +FL +  RP  A+ T+    H   +       SA 
Sbjct: 196 RLGAGPHFAVEGDEYDTAYFDKGP-KFLHY--RPRTAIFTSCELDHADIYRDEAHYESAF 252

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQ 269
                 L + G +           +   +       + ++      AD++ R      E 
Sbjct: 253 ERFMGILPEDGFLAACASYESVLRIARGARC----RVETYAVDRPGADWEARGLALSPEG 308

Query: 270 SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +   +  +G+++ EV+    G H  +N L      S L          L  FH  +   +
Sbjct: 309 ARFTLARRGEALAEVLLPVGGAHNVENALGVAAAASALGLSPAEIAAGLGAFHGVK---R 365

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R       G  T+ID+ +  +P +++  ++ +    P    R +A            ++ 
Sbjct: 366 RQEVRGKAGGVTVIDD-FAHHPRAVQKTLAAIRGAYP--GARLLAAFE--PRSNTSRRNL 420

Query: 389 H-IDLAEVLSLYNISHVWLSGFHV-------------LALKDALPRSIHVHYSETMDGLF 434
           H  + A   +  + + V+L                    ++D            T++ + 
Sbjct: 421 HQREYAAGATWRDAAEVFLLRPAPTDRVPESERLDVDAVVRDVTAAGTPARAFATVEEMV 480

Query: 435 LFIQSSLVDGDVVVVKSSNSC 455
             I ++   GDVVV   SN  
Sbjct: 481 PAIAATARPGDVVVAM-SNGA 500


>gi|293391930|ref|ZP_06636264.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952464|gb|EFE02583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 457

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 141/410 (34%), Gaps = 32/410 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  I     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 67  MVIVGNAMKRGNPCIEYMLANNIPYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 126

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L + P    + + E            +  V   P 
Sbjct: 127 ILEQNGLQPGFLIGGIAGNFGISARLGQSP----YFVIEADEYDTAFFDKRSKFVHYNPR 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  I   H   F  +  I      +   +   G I     +   +   A       +
Sbjct: 183 TLIINNIGFDHADIFDDLNAIQRQFHHMIRTIPNNGRILSFAGEESVQQTLAMGCWSECQ 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            +      K+ ++   + K   + +   V  +G+ +  VH + +G H  +N LM +   +
Sbjct: 243 YV-----GKDQEWYAERIKH--DCTEFAVYHKGEKITEVHWNIVGEHNMRNGLMAIAAAN 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A   L  F   +   +R     N    T+ D+ +  +P  ++A ++ L    
Sbjct: 296 HAGVSIENACATLGSFINAK---RRLEVKGNVHGITVYDD-FAHHPTEIQATLTALRD-K 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
                R +AVL    E    +     H D +A  L L +   ++        + D A   
Sbjct: 351 VGQNARILAVL----EPRSNTMKMGVHKDEIAPALKLADAVFLFQPETIPWKVADIAAQL 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEE 467
           +   + S+ +D     I +     D ++V    S       +L+  L ++
Sbjct: 407 TQPAYDSDNLDTFVDLIVAETKPTDHILVMSNGSFGGIHQ-KLLEALQKK 455


>gi|301165433|emb|CBW25004.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 460

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 118/348 (33%), Gaps = 29/348 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  IIA+ GS G+TT   M+   L    K    IG  +    +  ++     ++D+ + E
Sbjct: 110 RKPIIAVCGSKGRTTVAHMIGYTLKLDGKNVF-IGGTSESSFIEYSMLPNKDEIDYVVVE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +       +R L +   P + V T I+  +   +F+ + E    K  I + L    T+ +
Sbjct: 169 VSAVQ---MRKLNNF-HPKLVVFTNISENYPEKHFNSVGEYIETKLSIIKTLSPDDTLVV 224

Query: 226 NYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           N+D    ++FF     +++    K+  + G        ++       +    +    +  
Sbjct: 225 NFDQLANNTFFRNANCQTYWYSRKSFVTMGVINE----IQGTHFHDRRIHSNINYHSEFK 280

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G +  +N+L  +     L     +    ++ F    G   R    + +     
Sbjct: 281 VNQMRIVGQNNRENLLAAVTACKALEVSDKSIQTCIAKF---PGIPHRLEFLMEKNGVDF 337

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S       +  +I    +      G      G   E  +    +  ++ E   +   
Sbjct: 338 YNDSKAEKMEDLCTSIKSFKKQVILIAG------GKDVEDFDFEP-YAPEIIEHTRV--- 387

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     +  AL          + +   L        GDV+++
Sbjct: 388 --VVLVGESKERMNRALQEHPQTFIVGSFEESILLAYQKSRTGDVILL 433


>gi|134095921|ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Herminiimonas arsenicoxydans]
 gi|133739824|emb|CAL62875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Herminiimonas
           arsenicoxydans]
          Length = 459

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   L+    +  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGYDPGFLIGGVPMNFGISARLSGTGRESSFFVIEAD 164

Query: 169 MSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V      A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 165 EYDTAFFDKRSKFVHYRAKTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGVGRMIAN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             +   + +  +      +    FG  +   + +       +    +V   G+    V  
Sbjct: 225 AREESLQRVIKRGCWSETE---WFGSKEQDGWTMT----THDDDTFDVFFNGEKQGTVQW 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  +     +      AI +L  F   +   +R           + D+ 
Sbjct: 278 PLNGEHNRMNALAAIAAARHVGVLPAQAIASLGQFENVK---RRMELRGVVNDIAVYDD- 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNI 401
           +  +P ++   ++ L      G  R +AVL      M  +G +  +         SL + 
Sbjct: 334 FAHHPTAIATTVAGLR--KKVGTARILAVLEPRSNTMK-LGTMKAAL------PGSLLDA 384

Query: 402 SHVWLSGFHVLA-------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             V+  G            L +AL P          ++ L   I  +   GD ++V  SN
Sbjct: 385 DLVFGYGASGNGKDALGWDLAEALAPLGDRGSAFSDLNALVAAIAKNAQPGDQILVM-SN 443

Query: 454 S 454
            
Sbjct: 444 G 444


>gi|325281843|ref|YP_004254385.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
 gi|324313652|gb|ADY34205.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
          Length = 452

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 86/271 (31%), Gaps = 23/271 (8%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      + + GS GKTTT  M+   L +    +  +      +    T+  +   
Sbjct: 95  YLYEQTKNKLRVIVGGSHGKTTTTSMIMHVLKTCGIEFDYMA--GALLEGFDTMVHLSDR 152

Query: 160 VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               +FE        I      H   P IA++T IA  H++ F   E      A   + +
Sbjct: 153 SKIAVFEGDEYLSSPIDRRPKFHHYHPDIAILTGIAWDHMNVFPTFENYVEQFALFTQQI 212

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G +    +D     + ++                 A  Q   +      +       
Sbjct: 213 TPNGKLIYYENDENLRQIASRVP---------------ASVQAIPYTSFPHYTEEGTTYL 257

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S+       G H  QN+         L  D    +KA++ +   +G  KR +    Q 
Sbjct: 258 AGSLPTPIQVFGEHNLQNISAAYLACKELGIDETAFLKAIATY---KGAAKRLQKIAEQN 314

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGE 368
              +  + +  +P+ ++A I  + +  P  +
Sbjct: 315 DTVVFLD-FAHSPSKLQATIKAVREQYPRHK 344


>gi|22297617|ref|NP_680864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermosynechococcus elongatus BP-1]
 gi|30316021|sp|Q8DMN8|MURD_THEEB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22293794|dbj|BAC07626.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermosynechococcus
           elongatus BP-1]
          Length = 454

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 102/319 (31%), Gaps = 35/319 (10%)

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              +        G+  N I      AR     D+ I E+    L      +  ++P  A+
Sbjct: 132 IFQAAGYNAPACGNIGNSICEVALTARAL---DWVIAEISSYQL----ESSPPLQPEFAL 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            TT+ P HL     ++   + KA +  G +    + LN DD +        H +      
Sbjct: 185 WTTLTPDHLERHGTLDAYVATKAHLMNGAKH---VILNGDDPYLRQ-----HMVNRWPQA 236

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSIL 306
            +  ++ A    +   Q    +  +V  Q + +    +    G H  QN L+ +    + 
Sbjct: 237 WWISTQGAIALPKGIAQGIYIAEDQVWFQDQPLLPTHILQMPGRHNQQNFLLAVATAHLA 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +T  K ++ F     R +R R          I++S   N  + +  +  +      
Sbjct: 297 GIPAETIAKGVAGFAGVPHRLERIRQWRE---VEWINDSKATNYDAAEIGLRSV------ 347

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G  I + G   + G+     +      L     + V L G         L      +Y
Sbjct: 348 -TGPVILIAGGQAKKGDDRPWLN------LIQEKAAWVLLIGEAAPQFAQRLEAIGFTNY 400

Query: 427 S--ETMDGLFLFIQSSLVD 443
              ET+D         +  
Sbjct: 401 EIMETLDRAVAAAAELVTQ 419


>gi|255974062|ref|ZP_05424648.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256957086|ref|ZP_05561257.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|257077882|ref|ZP_05572243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294780582|ref|ZP_06745945.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|307268073|ref|ZP_07549461.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|307278956|ref|ZP_07560015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|312901048|ref|ZP_07760339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|255966934|gb|EET97556.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256947582|gb|EEU64214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|256985912|gb|EEU73214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294452409|gb|EFG20848.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|306504343|gb|EFM73554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|306515714|gb|EFM84241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|311291874|gb|EFQ70430.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|315031721|gb|EFT43653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0017]
 gi|315034222|gb|EFT46154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0027]
 gi|315147944|gb|EFT91960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4244]
 gi|329574355|gb|EGG55927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TX1467]
          Length = 456

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|152980991|ref|YP_001354657.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|151281068|gb|ABR89478.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 457

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 125/384 (32%), Gaps = 62/384 (16%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   L+    +  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGYDPGFLIGGVPMNFGISARLSGSGKESSFFVIEAD 164

Query: 169 MSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  H   A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 165 EYDTAFFDKRSKFVHYHAKTAILNNLEYDHADIFPDLHAIETQFHHLVRTVPGVGRVIAN 224

Query: 227 YDDSFFELLKAK-----SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             ++  + +  +     S   G K  +S     + +F +              +LQG   
Sbjct: 225 GREASLQRVLQRGCWSESEWFGGKEGWSLATHDDGNFDV----------IFNGELQG--- 271

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H   N L  +     +      AI AL  F   +   +R           +
Sbjct: 272 TVQWSLTGEHNRMNALAAIAAARHVGVLPAQAIAALGQFENVK---RRMELRGTVKDIAV 328

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQSFHIDL 392
            D+ +  +P ++   +  L      G+ R +AV         LG M E            
Sbjct: 329 YDD-FAHHPTAIATTVEGLR--KKVGKARILAVLEPRSNTMKLGTMKE------------ 373

Query: 393 AEVLSLYNISHVWLSGFHVLA-------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
           A   SL +   ++  G            L +AL P          +  L   I  S   G
Sbjct: 374 ALPGSLVDADLIFGYGASGNGKDALGWDLAEALAPLGEKARSFNDLPTLVQAIAQSAQAG 433

Query: 445 DVVVVKSSNSCGFY----RLINLL 464
           D V+V  SN  GF     ++++ L
Sbjct: 434 DQVLVM-SNG-GFGGVHQKILDAL 455


>gi|75765115|ref|ZP_00744396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74487397|gb|EAO51332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 337

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 111/325 (34%), Gaps = 39/325 (12%)

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L   +K     G+      V   +A+   + +  + EL    L  +       +P IA 
Sbjct: 20  MLKEGQKHPVIAGNIGT---VACEVAQDAKENEVVVTELSSFQLMGVE----SFQPKIAA 72

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              +  AHL      +E   AKA +F+   +     +N DD+    L A +    I    
Sbjct: 73  FLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDYSVINADDADVMELSADTKGQKIL--- 129

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSIL 306
            F  +K     +       + +   +  +G+ +  V      G H  +N+L  + I  +L
Sbjct: 130 -FSTTKE----IEDGACIKDNA---LYFKGEKVVEVSDIVLPGQHNLENILAAMSIAKLL 181

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L  F   + R +      N+ F+   ++S   N  + + A+S  +Q    
Sbjct: 182 GTSNEAITVVLKRFTGVKHRLEYVTTINNRKFY---NDSKATNMLATEKALSAFTQ---- 234

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HV 424
                I +L    + G                 N+  +   G     L  A  ++    +
Sbjct: 235 ----PIVLLAGGLDRGNEFDDLIPYF------KNVKAIVTFGQTAPKLVRAAEKAGLDII 284

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              +T+D   +   +   + DVV++
Sbjct: 285 ESVDTLDEAVVKAYAHSKEDDVVLL 309


>gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 516

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 140/422 (33%), Gaps = 66/422 (15%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV--QKGAGLVVVNTDMVASIGSLSIPV 85
             ++ DSR +     FF  KG      +F+   +   KG G V    +   S G   +P 
Sbjct: 30  TSVAYDSRKVTAGTLFFC-KG------NFLPKYLTMAKGQGAVAYVAEQEYSEGG-DLPA 81

Query: 86  FGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D   A+  L        + + TIIAITG+ GKTTT  M    L      +  + S 
Sbjct: 82  IIVKDEQKAMALLGAAFYGFPQDELTIIAITGTKGKTTTAYMADHVLGRATDHHVALFST 141

Query: 144 NNHI-------------GVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            + +               P +L       A +   +   + E+        +  T+ + 
Sbjct: 142 LDRVLGNGPDDRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSSQAYK--KHRTYGLH 199

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             I +   I+P H+         +    K ++   L  +    +N + +    +   + A
Sbjct: 200 FDIGIFLNISPDHIGRNEHPTFADYLHCKEQL---LVNSRVCLINAETADLADVYYTAKA 256

Query: 242 LGI-KTIYSFGKS---------KNADFQLRKWKQCSEQSWMEV-------QLQGKSMEVV 284
               + IY F +             DF+ R   +   +S  E+       +  G      
Sbjct: 257 TTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLEDLHESEFELAACTPKAERLGLQRRYK 316

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +   N +  + I + L         A       +GR +  +   +      I  
Sbjct: 317 TSVPGDYNEGNAVAAI-ISTALAGATAEDAAATLDHVHIKGRMEMQKTRQHG----TIYI 371

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N AS+K  ++ L + +    G+   VLG     G+   S      + LS  +   +
Sbjct: 372 DYAHNYASLKRLLAFLKRQTAA--GKVTVVLGA---TGDKGISRRQGFGKALSEEHPDQI 426

Query: 405 WL 406
            L
Sbjct: 427 IL 428


>gi|219666155|ref|YP_002456590.1| cyanophycin synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536415|gb|ACL18154.1| cyanophycin synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 885

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 110/344 (31%), Gaps = 47/344 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D V   G+  IPV  V    G      +  ++ +   +     +VG TTT  +       
Sbjct: 470 DHVMPKGNGRIPVISVTGTNGKTTTTRMIGKMLTDREL-----AVGMTTTDGIY------ 518

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +       G         + L     DV   + E   +  G +R         +AV+T +
Sbjct: 519 VGGKLLLKGDTTGPESAQIVLR--HPDVQVAVLE--TARGGILRAGLAYDYADVAVVTNV 574

Query: 193 APAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           A  HL  +    +E+IA  K+ I E +     + LN DD        K+       +  F
Sbjct: 575 ANDHLGQYGMESLEDIAHVKSLIAEVVRPHSYVVLNADDPLVASFARKTKG----KVIFF 630

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG----------------KSMEVVHHGIGYHMAQ 294
              K+    L   K  +         +G                K + V  +G   H  Q
Sbjct: 631 STEKDN---LTIRKHLAVGGIAVFVRRGNILLCQGDQSHKICGVKDLPVTWNGKALHNLQ 687

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    +    +LS F       +        G   +  + Y  N A +K
Sbjct: 688 NALAAIAVGWSLGLKAEGIRTSLSEFTSDPECNRGRLNPYTIGGVQVFID-YGHNAAGIK 746

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           A    L +          AV+G +   G+       ++A V + 
Sbjct: 747 AIAQTLRKFKAP------AVVGCVTVPGDRPDETIREVARVAAR 784


>gi|291557934|emb|CBL35051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum V10Sc8a]
          Length = 438

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 119/377 (31%), Gaps = 44/377 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            + + D++     + +     D++   +              II ITG+ GK+TT  ++ 
Sbjct: 67  CLDDCDVIMKAPGVILKNIVSDEIKAKITSQTDLFLRFCDNMIIGITGTKGKSTTSSLIK 126

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +    K    IG+       PL            + E+    L  ++       P +A
Sbjct: 127 FFIEKSGKDTMLIGNIGVP---PLERREEFTKDCVIVCEMSCHQLEYVK-----ASPDVA 178

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  + P HL +++      +AK  IF    +  T+ +       E +K          +
Sbjct: 179 VLLNVYPEHLDHYTDFAAYRNAKLNIFRYQNENDTLII------GEEVKQYDDTKA--RV 230

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            + G      F        +   ++ +       ++      G H   N+ + +   +  
Sbjct: 231 ITAG------FSCGDIGTRNGGIFIGDEFYPADMIDTKLK--GEHNLYNIAIAIYAATKA 282

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V   + AL  F    G   R            I++S +  P +  AA+         
Sbjct: 283 GCTVKQCLDALPQF---CGLEHRLEYVCTLNGAEYINDSISTAPQTAIAALKAYPDTD-- 337

Query: 367 GEGRRIAVLGDMCE---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  ++G M       ELS     D     S+ N+  + L        +      + 
Sbjct: 338 -----TLIIGGMDRGIPYDELSDWLSAD----TSVRNL--IILPDSGKRVAEKVTNPLVK 386

Query: 424 VHYSETMDGLFLFIQSS 440
           + Y++ M+    + +  
Sbjct: 387 LIYADDMEQAVKYAKQV 403


>gi|229817317|ref|ZP_04447599.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
 gi|229785106|gb|EEP21220.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 120/327 (36%), Gaps = 50/327 (15%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FIL A ++G                  IPV    +V  A        R    A  I ITG
Sbjct: 69  FILEAAKRG------------------IPVMS--EVEFAWQLRVANERTGKPAPWIGITG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLG 173
           + GKT+T EM +  LS+        G+  +   + ++L+R       D    EL    + 
Sbjct: 109 TNGKTSTTEMTSAMLSACGLDAPTAGNIASG-NMSMSLSRCVTNPKHDALCVELSSFQM- 166

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                T  +    A IT IA  HL    G E  A+ KA++F  +++   +  N DD+   
Sbjct: 167 ---HFTDSLELDCAAITNIADDHLDWHGGRENYAADKAKVFHRVKR--ALVYNADDAVVT 221

Query: 234 LLKAKSH-ALGIKTI-YSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
               ++  A G + I ++ G  +      AD  +      +   + +        E  H 
Sbjct: 222 AKANEAETAEGCRRIGFTLGVPQAGQIGVADGWIVDMSGVASGEFGKPNRLAPVGEFTHL 281

Query: 287 G-----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA------LN 335
                 I  H+  + L  L +   L  D   A++AL  F      G R           +
Sbjct: 282 AEPDGTIYPHLLADALTALALALGLGVDSGKALEALKSF---APGGHRIATVAATAPDEH 338

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ 362
                 +D+S   N  ++KA+IS  +Q
Sbjct: 339 GNVIRFVDDSKATNAHAVKASISSFAQ 365


>gi|315038048|ref|YP_004031616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276181|gb|ADQ58821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|327183328|gb|AEA31775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1118]
          Length = 459

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 125/384 (32%), Gaps = 51/384 (13%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--- 130
           MV     L+IP+    +   AL+              + +TGS GKTTT  +    L   
Sbjct: 89  MVQKAEELNIPIIT--EPEIALSCSEAPY--------VCVTGSNGKTTTVMLTQRILDHH 138

Query: 131 -SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                     +G+    I   +  A      D  + E+    L         + P +A I
Sbjct: 139 LQKSGHHAYAVGNIGVPISEVVPKATKD---DILVVEISSFQLLG----VTDIDPKVAAI 191

Query: 190 TTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
             I    HL      E   +AK  +            NYD    + + A+   +    + 
Sbjct: 192 VDIYHNVHLDYHKTFENYVNAKLNVTRTQTSDDYFIANYDQ---KDILAQEKKVSPAKMQ 248

Query: 249 SFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +F +   NAD+ +   +    Q+   +++            G H  QN L+ + I  I+ 
Sbjct: 249 TFSETDHNADYFIGD-EYLESQNEKIMKIAD------IKLPGIHNLQNSLVAIAISKIMG 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           AD D     LS F    G   R +         + ++S + N  +   AI    +     
Sbjct: 302 ADNDDIAAVLSTFT---GAKHRLQYVTTLDGRKVYNDSKSTNIEAATVAIPAFKEPEV-- 356

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
               IA        G L + F  D    L   ++  + L G     L DA  ++    + 
Sbjct: 357 ---LIA--------GGLDRGFTFDDLVPLFKKHVKSIVLYGETKYLLADAARKAGIKDIV 405

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
              T+             GDV++ 
Sbjct: 406 IVNTLQEAVPRAYELTEPGDVLLF 429


>gi|261349377|ref|ZP_05974794.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861741|gb|EFC94039.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
          Length = 478

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 143/434 (32%), Gaps = 55/434 (12%)

Query: 57  ILHAVQKGAGLVVVNTDM---VASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATII 111
           +  A  K    ++  T           L+ P+  VD  ++  A        +    +  +
Sbjct: 52  VEIAAGKNLACLITQTPQDGAWDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNV 111

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYAC----IGSYNNHIGVPLTLA-----RMPVDVDF 162
            ITG+ GK+TT  ++   L +              +N  I   ++       +    +D+
Sbjct: 112 IITGTNGKSTTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDY 171

Query: 163 GIFELGMSH------LGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            + E+          +    +L    V+P + VIT IA  H+   + I+E+     ++  
Sbjct: 172 LVIEVSEVQGWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPN 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G   LNYDD     L  K   L          SKN +                + 
Sbjct: 232 AIG-DGVTVLNYDDDLVMKLTPKHPFLCSMNNM---DSKNPNVYYDN----------GIF 277

Query: 276 LQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +GK +          +H  QN+L  +     L  D++  ++ +  + P   R  +    
Sbjct: 278 YEGKRILENKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLH-- 335

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA--VLGDMC--------EMGE 383
                  LI + +  NP  +KA I+   ++    +   +   + G           E   
Sbjct: 336 ----ENPLIVDDFAHNPDGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALA 391

Query: 384 LSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
            S   +  L    S   + H+ ++         + L + +I  +Y + +           
Sbjct: 392 ESMDDNTKLVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCA 451

Query: 442 VDGDVVVVKSSNSC 455
              D++++  +   
Sbjct: 452 DANDIILLIGAQGM 465


>gi|330826365|ref|YP_004389668.1| UDP-N-acetylmuramate [Alicycliphilus denitrificans K601]
 gi|329311737|gb|AEB86152.1| UDP-N-acetylmuramate [Alicycliphilus denitrificans K601]
          Length = 480

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 126/375 (33%), Gaps = 41/375 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YNNHIGVPLTLARMPVDVDFGIF 165
            ++A+ G+ GKTTT  ML   L         +      N  I   L            + 
Sbjct: 129 HVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGISARLGALAAGQARPLFVI 188

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  AV+  +   H   F  + +I      +   +  +G +
Sbjct: 189 EADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLGQIERQFHHLVRTVPPSGRV 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N      E L    HA     + SFG +  +DF  R      E    EV  +G+++  
Sbjct: 249 VVNG---LEESLARVLHAGCWSGVASFG-AAVSDFCAR-----GEPHDFEVLQRGQAVAR 299

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L  +     +      A +AL+ F       +R          ++ 
Sbjct: 300 VQWALTGVHNQLNALAAIAAAEHVGVAPAQAAQALARFENVR---RRMELRGTARGISVY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQSFHIDLA 393
           D+ +  +P +++  +  L +    GE R +AV         LG M             L 
Sbjct: 357 DD-FAHHPTALRTTLDGLRR-RVGGEARILAVFEPRSNTMKLGTMK----------SQLP 404

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             L   +++    +G    A +   P       +  +  L   + ++   GD ++   SN
Sbjct: 405 WALEQADLAFCHTAGLDWDAAEALAPMGARARTAADIPTLVAQVSTAAQPGDHILCM-SN 463

Query: 454 SCGFYRLINLLLEEF 468
              F  +   LLEE 
Sbjct: 464 GS-FGGVHAKLLEEL 477


>gi|291334161|gb|ADD93830.1| UDP N acetylmuramate [uncultured marine bacterium
           MedDCM-OCT-S05-C75]
          Length = 471

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 88/263 (33%), Gaps = 20/263 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG   N+      L     D  F + E  
Sbjct: 108 VLAVAGTHGKTTTASMLAWILEQAGLNPGYLIGGAPNNFEQSARLG----DGPFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP   ++  +   H   F  I+ I +    +   + + G + + 
Sbjct: 164 EYDTSYFDRRSKFVHYRPRTLIVNNLEYDHADIFPDIDAIQAQFHLLLRTVPQGGLVVVP 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGKS-- 280
            DD     +  +     I  + S    K  D         ++        EV L   S  
Sbjct: 224 SDDEAVNEVLHQGCWTPIARVGSKAPRKPVDHDNGDLWSATQGAAGPGKFEVLLNDVSQG 283

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E      G H   N L  +          D +I AL+ F   + R +       +   
Sbjct: 284 LIEWSLK--GAHNRSNALNAIAAARHAGVPTDVSIDALNRFSGVKRRMEVI----FEDAH 337

Query: 340 TLIDESYNANPASMKAAISVLSQ 362
           T+I + +  +P +++A +  L  
Sbjct: 338 TVIYDDFAHHPTAIRATLQGLRD 360


>gi|212697083|ref|ZP_03305211.1| hypothetical protein ANHYDRO_01648 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675858|gb|EEB35465.1| hypothetical protein ANHYDRO_01648 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 305

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++ + ++ R+     II++TG+ GKTTT  ++T  L+   +    +G+    I     L 
Sbjct: 83  ISDIELSYRIFKDKKIISVTGTNGKTTTTSLITYVLNQAGQKAISVGNIGEGI-----LW 137

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +M       + E+    L +    T   +PHI  I  I+P H+      E  A+ K ++ 
Sbjct: 138 QMYNKDAVFVEEVSSFQLHD----TKTFKPHIGAILNISPDHIDWHGSFENYANDKLKLA 193

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWM 272
              ++   + +N+DD      K K        IY F   +  +    L+      +    
Sbjct: 194 VNQDEDNFLVINHDDKILLENKNKFKT----KIYEFSMKEKVERGIYLKDDSLYLKDQKD 249

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              L  K        +G H   N    +  + +   D++             
Sbjct: 250 IFLLNKKD----LKIVGNHNLANAACAMLCLYLYGIDLEKIKNIQKPLRQLN 297


>gi|332878268|ref|ZP_08445994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683719|gb|EGJ56590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 118/352 (33%), Gaps = 42/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + +TI+AITGS GKTTT  +               G+        +  +  P    + + 
Sbjct: 100 THSTIVAITGSNGKTTTTLLTHHIFKQAGLEVGLGGNIGYSFAELVAHSNPP----YYVL 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L  I        PHIAV+  I P HL  +    E   ++K  I           
Sbjct: 156 EISSFQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYIASKFRIAMNQTANDYFI 211

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            + DD         +H L  K I  F      S+ A  +  K     E     + ++  S
Sbjct: 212 YDADDPVINDWLT-THPLKPKCI-GFSIEKELSEGAFLKDNKIHIMLENQTTVIDVEEIS 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++      G H  +N +       ++     +  ++L  F     R +  +        T
Sbjct: 270 LK------GKHNIKNTMAAAVAARLVNIRNASLRESLKGFQGAAHRLEEVKVVE---GVT 320

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLS 397
            I++S   N  S+  A+  +           + ++G   +  + +      H  + + + 
Sbjct: 321 YINDSKATNVNSVYFALDTIKT-------PIVWIVGGQDKGNDYNSLLPYVHQKV-KAIV 372

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + +  +    + +  + +   +      +M+      Q     GD V++
Sbjct: 373 CLGVDNTPI----LQSFYNVIDNMVETR---SMEEAVKMAQRFATAGDTVLL 417


>gi|123967558|ref|YP_001008416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           AS9601]
 gi|123197668|gb|ABM69309.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 134/385 (34%), Gaps = 41/385 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + A L    T  A+ GS GKT+T   L+  L    +  + I      I        
Sbjct: 84  HRSEILAMLMRTYTSFAVAGSHGKTSTSTFLSTILELCTRNSSSITGGIIPIYNSNCHLE 143

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + E+  S  G I    +  +  I +I  I   H  +FS + E+  +     +
Sbjct: 144 ---NTKYLVAEVDESD-GTI----NKYKSDIGIINNIDFDHCDHFSNLSEVICSFNSFAK 195

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K   + LN+D          S+       +S   +KN  + +   +  +  +  +  
Sbjct: 196 NSKK---LLLNFDCE------TSSNNFYSNFKWSNTTAKNVTYAIIPTEINARYTIGKYY 246

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G  +  +     G H   N+   +    ++  D     K +      +   KR+    
Sbjct: 247 ENGNLIGSLKIPIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPK---KRFEFRG 303

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSF 388
                +L D+ Y  +P  +K  I +   +      +   + R IA+           + F
Sbjct: 304 QIDERSLYDD-YAHHPNEIKETIKLGRLLIQQKHNNECQQRRLIAIF--QPHRYSRVKQF 360

Query: 389 HIDLAEVLSLYNISHV---WLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQ 438
             + AE LS  ++ +V   + +G           + D +  ++ +V Y      +     
Sbjct: 361 TKEFAEELSKADVIYVTSIYGAGEGNEEKITSKMITDLIYKKNENVSYINNYYEVTKNFY 420

Query: 439 SSLVDGDVVVVKSSNSCG-FYRLIN 462
                GD+++   +  C   + ++N
Sbjct: 421 ELTQKGDLILNMGAGDCHILWSILN 445


>gi|162449933|ref|YP_001612300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161160515|emb|CAN91820.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 456

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 130/398 (32%), Gaps = 43/398 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A+  GA LVVV+  + +     ++           + +L +A+R    A ++ 
Sbjct: 61  GHD---PALFDGADLVVVSPGVPSFPALDAVA----RSGREVIGELELASRF-VSAPVVL 112

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GK+TT  +    L          G++   +   +         D  + E+     
Sbjct: 113 VGGTNGKSTTTALTGAMLERAGLRTFVGGNFGTPLAEVV-----DQTWDVLVLEISSFQ- 166

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                    +      +  I   HL  ++     A AK   FE +       +     F 
Sbjct: 167 ---AERVPTLHARAHALLNITDDHLDRYASFAAYADAKGNPFERMTPDDVAVV----PFG 219

Query: 233 ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           + L A+  A G   + +F  +   AD            +     L            G H
Sbjct: 220 DELVARQAARGRARVVTFSARDARADVSAAGGAIVDRVTGARYPLD------RVRLAGAH 273

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N   +  + + L A       ALS F   EG   R     +       D+S   N  
Sbjct: 274 NLANACASAALAAALGAPAAAIGDALSSF---EGLAHRTALVADVDGVRYYDDSKGTNVG 330

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  AA+S L +         + + G   ++G+ +      L   L     + V L G   
Sbjct: 331 ASVAALSGLLEAKA------VLIAGGRDKLGDYAP-----LVSALRERGRALVVL-GEAA 378

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  A    + +  + +M    L  +S    GD V++
Sbjct: 379 DRIAAAAAGVLPIARAGSMAEAVLAARSLARPGDAVLL 416


>gi|284039597|ref|YP_003389527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
 gi|283818890|gb|ADB40728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
          Length = 449

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 121/358 (33%), Gaps = 33/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++++  AAR   KA +I ITGS GKTTT  +    L +        G+  +     +   
Sbjct: 92  ISEIEFAARYT-KARLIGITGSNGKTTTTLLTYHLLKTAGFNVGLAGNIGDSFAEQV--- 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
            +    D+ + EL    L ++    +  +  + V+  I P HL  ++   +   ++K  I
Sbjct: 148 -IADTYDYYVLELSSFQLDDM----YKTQLDVMVLLNITPDHLDRYNYEFQNYVASKFRI 202

Query: 214 FEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
            +      +     ++    + L  +   +    I S   + +    L   +  ++    
Sbjct: 203 LQNARPADSFIYFAENQPILDELAKRQPDVKKLPI-SLQSTPSPGGYLADGQLTAKTQTQ 261

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              +Q    +      G H A NML  +     +    +     L  F        R   
Sbjct: 262 SFAIQ----QSETPLRGPHNALNMLAAILAAQSVGVTSEAIQAGLKTFQNAA---HRLEP 314

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A        I++S   N  S+  A+S +   +    G            G+   + +  L
Sbjct: 315 AGTINGIQFINDSKATNVDSVFYALSSMDTPTIWIAG------------GQDKGNDYSQL 362

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + L    +  +   G     L D     + + Y ++ +             GDVV++
Sbjct: 363 -DALVSQKVKALICLGVDNHKLVDYFGGKVPLIYETQNITDAIAKGLELGQSGDVVLL 419


>gi|315173293|gb|EFU17310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1346]
          Length = 456

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E++              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAESVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|149927202|ref|ZP_01915459.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Limnobacter sp. MED105]
 gi|149824141|gb|EDM83362.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Limnobacter sp. MED105]
          Length = 451

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 120/381 (31%), Gaps = 40/381 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            ++A+ G+ GKT+T  ML   L          IG      GV  TL +     D  + E 
Sbjct: 92  KVLAVAGTHGKTSTSSMLAWVLQQAGLNPGFLIGGVPGGFGVSATLGQG----DCFVIEA 147

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V  RP +AV+  +   H   F  +  I +    +   +   G +  
Sbjct: 148 DEYDTAFFDKRSKFVHYRPVVAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPSEGRVVC 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGK-SMEV 283
             +    E +  +        +  F  + + A +Q          S  EV + G+   +V
Sbjct: 208 PANTESLERVLKRG---CWTPVARFSANGDEAPWQA----HVLGASRFEVLMHGEVKGQV 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  +     +   V  A  ALS F   +   +R           + D
Sbjct: 261 EWDWSGLHNVNNALAVIAAAHAVGVKVADACNALSAFPGVK---RRMELRGEAAGVRVYD 317

Query: 344 ESYNANPASMKAAISVLSQ-------ISPHGEGRRIAVL----GDMCEMGELSQSFHIDL 392
           + +  +P ++   +             +    GR IA+       M  MG L+Q+     
Sbjct: 318 D-FAHHPTAIATTLEGAKARMAEIALANGQPAGRLIALFEPRSNTMK-MGTLAQALPASF 375

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-- 450
                       + +G               +  S+ ++ +   + S    GD VV    
Sbjct: 376 ----DEAQAVVCYTAGIQWNVRDTLGSVGERLFTSDNLNEVIDHVVSQAQPGDWVVAMSN 431

Query: 451 SS-NSCGFYRLINLLLEEFPA 470
            S       +LI+ L     A
Sbjct: 432 GSFGGIHQ-KLIDALASRVKA 451


>gi|120609513|ref|YP_969191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
 gi|120587977|gb|ABM31417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
          Length = 667

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 125/386 (32%), Gaps = 56/386 (14%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L AL      A       ++AITG+ GKTT   +  + +    ++ A  G+    +   
Sbjct: 269 ALDALKASHGYA-----PAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTLLD- 322

Query: 151 LTLAR-MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            TL R +  D      + EL    L           P  A +  +   HL     ++  A
Sbjct: 323 -TLGRHLDADTLPQAWVLELSSFQLEG----AAGFEPTAATVLNVTQDHLDWHGDMQAYA 377

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKS---KNADFQ 259
            AKA IF    ++G + LN +D+    +     + K     ++   +FG     +  DF 
Sbjct: 378 RAKARIF---GESGLMVLNREDAAVMGMLPPPVRVKLQKPQLRAHVTFGADMPQRPGDFG 434

Query: 260 LRKW----------------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +                   ++    +  ++ +Q           G H A N L  L + 
Sbjct: 435 IETVNGMAWLVRAQESDETARRTRSHAEEDLHIQRLIPADALRIRGRHNAVNALAALALA 494

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     + A        G   R             D+S   N  +  AA+  L   
Sbjct: 495 HAAGCAFAPMLYA---LREYRGEPHRVEPVGRVNEVEYFDDSKGTNVGATVAALGGLGA- 550

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
               + R + +LG   +  + S      LA  +S Y +    L G     ++ AL    +
Sbjct: 551 ----DRRVVVILGGDGKGQDFSP-----LAMPVSRY-VRAAVLIGRDGPQIRAALRDAGV 600

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            +  + T+             GD V+
Sbjct: 601 PLIDAPTLPEAVRLAAQRAHAGDAVL 626


>gi|227535241|ref|ZP_03965290.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187125|gb|EEI67192.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 459

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 110/354 (31%), Gaps = 44/354 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + L+  +  +A   + N  I V     ++  D D  + EL    L  I+ L     P
Sbjct: 129 LIGLMLNQQRPHHA-FDAGNIGIPVSQVAQKVGKD-DTIVAELSSFQLCGIKTL----HP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL          +AK  I           +N+D      L  +S A   
Sbjct: 183 HIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHELAKQSKA--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  F +      + +         W+                G H  +N L  +  V 
Sbjct: 240 -QIVPFSRKNAEGARAQLID-----GWLTFDGDRIMKASEMQIPGLHNIENALAAIAAVK 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D   + L  F   +    R +         + ++S   N  +   A++   Q  
Sbjct: 294 LEGVGDDAIREVLRTFSGVK---HRIQYLETIDGRRVYNDSKATNVEAATVALNAFDQ-- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
                  I  L    + G       +D    L   ++  + + G     +        + 
Sbjct: 349 ------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTAPLMGKIAKDAGVP 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465
           V  +E +             GDV+++    +S             F +++N L 
Sbjct: 398 VQTTENVMTAVPLAYEVSRPGDVILLSPAAASWDQYPNFEVRGDNFIKVVNQLK 451


>gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 353

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 49/301 (16%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           F +++   QGH      +   + IS DSR +     FFA KG  +   +++L A+ +G  
Sbjct: 17  FREIID--QGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFKK-EYLLSAITQGLA 72

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKE 124
             V   D       + IPV  V+D+  A++   +      + K  ++A TG+ GKTT   
Sbjct: 73  WYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAFTGTKGKTTATY 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMP-----VDVDFGIFEL 167
                LS      A + + N  +               + L  M       D    I E+
Sbjct: 128 FAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQNDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
                   R   + +   + V   I P H+        E+    K  + E    +  + +
Sbjct: 187 SSQAYLVHR--VYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN---SRAVII 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVV 284
           N D   F +LK +             + ++ DF   ++    E S        G S+E++
Sbjct: 242 NSDMDHFSVLKEQV------------EDQDHDFYGSQFDNQIENSKAFSFSATGNSLEIM 289

Query: 285 H 285
            
Sbjct: 290 I 290


>gi|256005655|ref|ZP_05430613.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
 gi|255990413|gb|EEU00537.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
          Length = 824

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 133/384 (34%), Gaps = 57/384 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               I+++TG+ GKTTT  ++   L+ + K      +    IG    L            
Sbjct: 420 HSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFIGDECVLKGDNTGPTSAAM 479

Query: 166 ELGMSHL----------GEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
            L    +          G +R         + VIT IA  HL     + +E++A AK+ +
Sbjct: 480 VLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHLGIDGMNTLEDLAFAKSLV 539

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-------------NADFQL 260
            E ++  G   LN DD F      ++       I  F K+               A +  
Sbjct: 540 VEAVKPGGYSVLNADDKFVRYFMERAKG----EIILFSKNNSNPVVKEHMQKGGKALYVD 595

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           +           EV +  K + + + G+     +N L     +  L   ++   K L+ F
Sbjct: 596 KDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYGLNLSIEAIRKGLATF 655

Query: 321 HP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           +P  E    R+       F  ++D  Y  NPA     +  L +I      R + V+G   
Sbjct: 656 NPDMESNPGRFNIVDMGDFKVMLD--YGHNPAGYLEVMKFLDKIDAK---RLVGVIGMPG 710

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDAL------PRSIH 423
           +  +LS        E+ S    S +++           G     L DA+        ++ 
Sbjct: 711 DRDDLSI---YKAGEICSKC-FSKIYIKEDSDLRGREPGEVAGILYDAVISSGTKKENVE 766

Query: 424 VHYSETMDGLFLFIQSSLVDGDVV 447
           + YSE    L   +  +   GD V
Sbjct: 767 IIYSEDR-ALEKALLDA-QPGDFV 788


>gi|222446083|ref|ZP_03608598.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435648|gb|EEE42813.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
          Length = 478

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 143/434 (32%), Gaps = 55/434 (12%)

Query: 57  ILHAVQKGAGLVVVNTDM---VASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATII 111
           +  A  K    ++  T           L+ P+  VD  ++  A        +    +  +
Sbjct: 52  VEIAAGKNLACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNV 111

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYAC----IGSYNNHIGVPLTLA-----RMPVDVDF 162
            ITG+ GK+TT  ++   L +              +N  I   ++       +    +D+
Sbjct: 112 IITGTNGKSTTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDY 171

Query: 163 GIFELGMSH------LGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            + E+          +    +L    V+P + VIT IA  H+   + I+E+     ++  
Sbjct: 172 LVIEVSEVQGWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPN 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G   LNYDD     L  K   L          SKN +                + 
Sbjct: 232 AIG-DGVTVLNYDDDLVMKLTPKHPFLCSMNNM---DSKNPNVYYDN----------GIF 277

Query: 276 LQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +GK +          +H  QN+L  +     L  D++  ++ +  + P   R  +    
Sbjct: 278 YEGKRILENKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLH-- 335

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA--VLGDMC--------EMGE 383
                  LI + +  NP  +KA I+   ++    +   +   + G           E   
Sbjct: 336 ----ENPLIVDDFAHNPDGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALA 391

Query: 384 LSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
            S   +  L    S   + H+ ++         + L + +I  +Y + +           
Sbjct: 392 ESMDDNTKLVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCA 451

Query: 442 VDGDVVVVKSSNSC 455
              D++++  +   
Sbjct: 452 DANDIILLIGAQGM 465


>gi|261749339|ref|YP_003257024.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497431|gb|ACX83881.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 467

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 108/354 (30%), Gaps = 53/354 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           II+ITGS GKTTT  ++   L          G+             +    D  + E+  
Sbjct: 110 IISITGSNGKTTTSYIVYKILQKEGFHVEIAGNIGRSFSR-----EVLKKKDVYVLEVSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             L +     +  R +IAV+  I   HL    + IE   S+K  I     K      N+D
Sbjct: 165 FQLDD----CYNFRSNIAVLLNITRDHLDRYHNDIESYISSKFRISTQQNKEDIFIYNHD 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVH 285
           D        K   L       F   +              + +   +   +         
Sbjct: 221 DPLIRKGFKKYPILS--NCIPFSIQEELCVGAY---LKENKIFFRNKFNQERCLLHVDKI 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N+L ++ +   L     + I  +      E    R    LN      I++S
Sbjct: 276 PLKGDHNLYNILASVLVSVTLNVRKTSMIHPILGLKSIE---HRMEKVLNINGVQFINDS 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  ++  A+  +   +    G            G+   + + ++  ++    +  + 
Sbjct: 333 KATNVNAVFYALKSMKAPTIWIAG------------GKDKGNDYREILPLVKE-KVKAII 379

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLF---LFIQSSLV-------DGDVVVV 449
             G +             + + + +  +      ++ ++         GD +++
Sbjct: 380 FLGKN---------NKKFISFFQDVIDIIFETNSLKKAVRMAYILSIHGDNILL 424


>gi|219558135|ref|ZP_03537211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
 gi|289570274|ref|ZP_06450501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis T17]
 gi|289544028|gb|EFD47676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis T17]
          Length = 163

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 338 FFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
             T+ID+ YNANP SM+A +  L+   + P    R  AVLG+M E+GE + + H  +  +
Sbjct: 7   GVTVIDDVYNANPDSMRAGLQALAWIALQPEATRRSWAVLGEMAELGEDAIAEHDRIGRL 66

Query: 396 LSLYNISHVWLSGF-------HVLALKDALPRSIHVHY----------SETMDGLFLFIQ 438
               ++S + + G        H  A+ +    S                   D     ++
Sbjct: 67  AVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLR 126

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 127 AELRPGDVVLVKASNAAGLGAVADALVAD 155


>gi|229817320|ref|ZP_04447602.1| hypothetical protein BIFANG_02581 [Bifidobacterium angulatum DSM
           20098]
 gi|229785109|gb|EEP21223.1| hypothetical protein BIFANG_02581 [Bifidobacterium angulatum DSM
           20098]
          Length = 518

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 131/391 (33%), Gaps = 46/391 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++  + A L +    + + G+ GKTTT  ML+  L    K  +     +       TL  
Sbjct: 124 HRSDILALLMNGCRAVTVAGAHGKTTTSSMLSHVLVQTGKDPSYAIGGSIQGADGSTLDG 183

Query: 156 MPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             V   D  + E   S     ++     RP IA+IT     HL ++       +A     
Sbjct: 184 GHVGAGDVLVAEADESDGSFDKY-----RPQIAIITNCEADHLDHYGDEAHYRAAFVR-- 236

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--------NADFQLRKWKQC 266
                 G + L  DD+    +     A       ++G +          A   +   ++ 
Sbjct: 237 HASHAVGHVVLCADDADALAVLDAMPAEVASKAVAYGTADPNGLNLNGAAYVHIVSEQES 296

Query: 267 SEQS--WMEVQLQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +        +++         + + V     G H A+N    L    +L  D D A K++
Sbjct: 297 AGSGVERFTLRMPAGIAGDQPRDIPVELSVPGVHNARNAAAALTAAMLLGVDADEAAKSI 356

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F    G  +R++        T++D+ Y  +P  + A +    +  P    R   VL  
Sbjct: 357 TGFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPESTIR---VLFQ 409

Query: 378 MCEMGELSQSFHIDLAEVLSLYN---ISHVW----------LSGFHVLALKDALPRSIHV 424
              +   ++ F  + AE L+  +   ++ V+            G   +  +    + +  
Sbjct: 410 -PHLFSRTKFFAHEFAEALAKADDVIVTGVFPAREKQEDFPGVGPLSIVREAKGMQGVEF 468

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              E M      +      GDV+    +   
Sbjct: 469 SAQEDMRVAAQMMVMRAHHGDVIFTVGAGDI 499


>gi|220906241|ref|YP_002481552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7425]
 gi|254766047|sp|B8HW13|MURD_CYAP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219862852|gb|ACL43191.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7425]
          Length = 453

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 130/393 (33%), Gaps = 34/393 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            H+F L        LVVV+  +      L   V      +  + ++ +A R   +   + 
Sbjct: 55  AHNFELDRDSHPPDLVVVSPGVPWQGAGL---VQARAAGIETIGEIELAWRHLQQFPWVG 111

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GKTTT  ++     +        G+    +     L      +D+ I E+    L
Sbjct: 112 ITGTNGKTTTTALVAAMFQTAGLKAIACGNIGYSV---CDLVLSEQAIDWVIAEISSYQL 168

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +  L     P IAV TT  P HL     +E     KA + +  E      LN DD + 
Sbjct: 169 ESLPRLA----PKIAVWTTFTPDHLERHGTLECYRETKAVLLQQAEYK---VLNGDDPY- 220

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             L+ +      +  ++    + A     +     E+ W++VQ Q           G+H 
Sbjct: 221 --LRQELSDRWPEVWWTSCNGRAALPHGIERGIYLEEGWVKVQEQPIVPVSSWKMPGHHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN+L+ + +  +    V    +A++ F        R            I++S   N  +
Sbjct: 279 LQNLLLAVAVAHLGGIPVAAIAEAVNNFGGVP---HRLEPICTWSGIQFINDSKATNYDA 335

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            +  +  +           I + G   + G+  +       E++       V L G    
Sbjct: 336 AETGLVAV-------PAPVILIAGGQAKQGDDRRWL-----EMIQTKAA-AVLLIGAAAN 382

Query: 413 ALKDALPRSIHVHY--SETMDGLFLFIQSSLVD 443
                L    +  Y   ETM             
Sbjct: 383 LFAQRLQEVGYDRYEIVETMANAVPRAAELAKK 415


>gi|167043784|gb|ABZ08475.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG3D20]
          Length = 480

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 146/441 (33%), Gaps = 58/441 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +AV +G   V        S+  + +P    ++++G             +   + + G+
Sbjct: 68  VGNAVSRGNPQVEWL-LRERSVPFVCLPQLIGEELIG-------------RRPTVVVAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  +   AL          +G     +      + +       + E         
Sbjct: 114 HGKTTTTSLTAFALCEAGCNPGYLVGGVPLDLPSG---SELGDSEAPFVIEGDEYDSAFF 170

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  +  RP I ++  +   H   F  + +++ +   +   +   G + LN DD+   
Sbjct: 171 DKRSKFIHYRPRILILNNLEFDHSDIFRDLADVSRSFDNLLRIVPSDGYVLLNGDDTNLF 230

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
            L          T+ S G  +  D  +  + +    +  ++  +G  + E+  H  G + 
Sbjct: 231 DLPDAPWT----TMLSVGTGEKNDLCITGFSEGPTGASFKLVWRGCEVGEIDWHLPGEYN 286

Query: 293 AQN-MLMTLGIVSILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           A+N  +  LG               D   A   L  F    G  +R    + +    ++ 
Sbjct: 287 ARNVAMAALGSALAQAVSSGDEPSLDNPFAALGLPPFDKCRGVKRRQEILVEREGLVVLS 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +  +P ++  A+  +    P     RI    +      ++  F  +  E L+      
Sbjct: 347 D-FAHHPTAIAGALVSMRARWPEH---RIIACFEPRSNTAVTNVFQDEFTEALAQ--ADE 400

Query: 404 VWLSGFHVLAL--------KDAL-----PRSIHVHYSETMDGLFLFI-QSSLVDGDVVVV 449
           V +   H             DA+      + +      T + L  F+ +        V+V
Sbjct: 401 VLIGAIHRAERFADNERLDADAMVQRFREKGLAGKAFSTNEALGEFLDEEEFKPEKKVLV 460

Query: 450 KS--SNSCGFYRLINLLLEEF 468
            +  SN   F  +I+ + E F
Sbjct: 461 -AFFSNGS-FDGVIDQVAERF 479


>gi|167622683|ref|YP_001672977.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
 gi|167352705|gb|ABZ75318.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
          Length = 461

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 141/406 (34%), Gaps = 51/406 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +       +        +A  +  +  ++A++G+ GKT+T  ML  
Sbjct: 68  LVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILPQRWVLAVSGTHGKTSTSSMLAW 127

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    + GV   L   P    F + E            +  V  +P 
Sbjct: 128 ILEDCGYEPGFLIGGVPQNFGVSARLGGSP----FFVVEADEYDSAFFDKRSKFVHYQPR 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             VI  +   H   F  ++ I      +   +   G I    D            A+ ++
Sbjct: 184 TLVINNLEFDHADIFDDLKAIQRQFNHVIRTVAGEGKIIWPAD------------AVSVQ 231

Query: 246 TIYSFGK-SKNADFQL-------RKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNM 296
            +   G  S+   + L              +    EV   G+S  V+    IG H  +N 
Sbjct: 232 QVIEMGCWSEQETYHLAPSSQGWHAVNLTQDGHKFEVFFDGESQGVLDWQLIGQHNIENA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +M +     +    D AI AL+ F P +   +R           + D+ +  +P ++   
Sbjct: 292 VMAIAAARHVGVKPDAAIAALTQFAPPK---RRMELLDTVNGIEVYDD-FAHHPTAIT-- 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HID-LAEVLSLYNISHVWLSGF-- 409
            + LS +       ++ V+     +   S +     H D LA  L+L + ++++ +G   
Sbjct: 346 -TSLSGMRARVGEAKVTVI-----LEPRSNTMKSGVHKDTLANSLALASNAYLYQAGNID 399

Query: 410 -HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             + +   +    + V Y   +D +   + +     D ++V  SN 
Sbjct: 400 WDMRSAMSSASIPVEVLY--DIDEIVDKVAAQACSTDTIIVM-SNG 442


>gi|294053947|ref|YP_003547605.1| Mur ligase middle domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293613280|gb|ADE53435.1| Mur ligase middle domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 469

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 137/404 (33%), Gaps = 51/404 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G      NT++  ++   SIP         +L +L   + L  +  ++ + G+
Sbjct: 68  IGNAMSRG------NTEVEWALNQSSIPY-------RSLPQLFHDSILPKRVPVV-VAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +     A  G     +   L            + E          
Sbjct: 114 HGKTTTSSIAAHLLRASG---AEPGWMIGGVPRDLPAGSSLGSGGPFVIEGDEYDSAFFD 170

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  +  RP +AV+  +   H   F  ++++          +   G   +N DD     
Sbjct: 171 KRSKFIHYRPQVAVLNNLEFDHADIFRDLDDVKRTFRHFLAIIPGDGHALINGDDPHLAE 230

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV-VHHGIGY 290
           L   +        +  G     D Q++ +    E +  ++  +G+   ++E  +H     
Sbjct: 231 LTPVTWT----NCHFVGVGAENDLQIKNFTDRPEGARFDLIWKGRHWATIEWGMHGLFNA 286

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A    +     S ++  +D  + AL  F       +R      QG ++++++ +  +P
Sbjct: 287 RNAAMAALAAAFASGMSNPLDFNLSALDRFGGVA---RRQDVLAEQGAWSVLED-FAHHP 342

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++  A+  L    P    R +    +       +  F  +  E  ++     V+L    
Sbjct: 343 TAVAGALDALRSAHPK---RSLYACFEPRSNTAATSVFQSEFTE--AMRRADRVYL---G 394

Query: 411 VLALKDALPRSIH------------VHYSETMDGLFLFIQSSLV 442
            +   + +P                    E+   L   +++++ 
Sbjct: 395 AVHRAERIPEERRLNTRKMAEEIGAAQAFESNAELANALRTTIQ 438


>gi|262199168|ref|YP_003270377.1| cytoplasmic peptidoglycan synthetase domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262082515|gb|ACY18484.1| cytoplasmic peptidoglycan synthetase domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 631

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 102/308 (33%), Gaps = 43/308 (13%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH A++T++   H+  FS +E++     +    L + G + +  D      + AKSHA 
Sbjct: 177 RPHTAILTSVELDHVDIFSSMEDVRETFRKFVALLPEDGRLLVAADSDEAMAI-AKSHAR 235

Query: 243 GIKTIYSFGKS----------------------KNADFQLRKWKQCSEQ-SWMEVQLQGK 279
                Y+  +                           +  R            E++ +G+
Sbjct: 236 CALETYAVERDSGNHGNNHGGNHGNNHGGDESEPAVTWLARNLAYTRNGRCSFELRHEGE 295

Query: 280 SME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +       G H   N++  + +   L         +++ F    G  +R         
Sbjct: 296 LFDSYETLLTGVHNVGNIVAAIAVAHSLGIAPSVIRDSIAAF---AGVARRQEIVGVAQG 352

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID+ Y  +P    A    L  +      RRI  + +        ++F  +    L+ 
Sbjct: 353 VYVIDD-YAHHPT---AVTETLRGLRRRFTERRIMAVFEPRSATSRRKTFQREYLSALAH 408

Query: 399 YN---ISHVW---LSGFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVV 447
            +   +  ++             +AL   +H       Y + +D +   +      GDVV
Sbjct: 409 ADSVVVGRLYNPDSIPPEDRFDPEALALKLHSGRTPASYIDNVDDIVRHLSEQARPGDVV 468

Query: 448 VVKSSNSC 455
           VV SS S 
Sbjct: 469 VVFSSGSF 476


>gi|326562098|gb|EGE12426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 7169]
 gi|326567059|gb|EGE17181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC1]
 gi|326572224|gb|EGE22219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC8]
          Length = 466

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 124/353 (35%), Gaps = 37/353 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +  +  IPV    DV   ++ L      + +   IIAITGS  K+T   ++         
Sbjct: 80  AAKAQGIPVIS--DVQLFIDTLKARDLTQATNTPIIAITGSNAKSTVTTLVGEMAKHAGM 137

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+        LT+  M    D  + EL    L  I  L        A I  ++  
Sbjct: 138 IVGVGGNIGTPALELLTIQNM----DLVVLELSSFQLEHISNLAA----QGATILNLSAD 189

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYSF 250
           HL    G+ +  + K  IFE  +   T  +  DD+         L + +    I T  S 
Sbjct: 190 HLDRHDGMVDYLAQKLRIFENCQ---TAIICQDDANLAKQCLTTLTSVAPNHTIITTNSL 246

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTA 308
              + ADF L       +   M +  Q   +  +H     G H   N L  L + +    
Sbjct: 247 LSHQTADFYLFD-----DGDGMALYHQKNKLLPIHQLKIKGKHNLLNALSALALGTAANL 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F   +G   R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 302 PMDAMLDTLKTF---KGLPHRCEYIDDIDSKAYFNDSKGTNIGSTIAAIDGLGTV--YGI 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                +LG + +  + S     +L+  +  + +  V+L G     ++  L + 
Sbjct: 357 SSLALILGGLGKGQDFS-----ELSAYVMQW-VDSVYLIGQDAPIIEQDLLKG 403


>gi|254520544|ref|ZP_05132600.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
           7_2_43FAA]
 gi|226914293|gb|EEH99494.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
           7_2_43FAA]
          Length = 458

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 118/348 (33%), Gaps = 41/348 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +  ITGS GKTTT  +++  L          G+    +   +   R   + D  + E
Sbjct: 116 KGKVYGITGSDGKTTTTTIISKLLEEAGYKTWVGGNIGTPLFSNIEEIR---EEDKVVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +      V   IAV+T +AP HL     ++E   AK  IF   +K G + LN
Sbjct: 173 LSSFQLMTMD-----VPVDIAVVTNLAPNHLDMHLDMQEYIDAKKNIFLYQDKDGVLILN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            ++        ++   GI   +S  +       L+      E + +         +    
Sbjct: 228 RENEITHGFVPEAK--GIVKEFSSKREIENGAYLKDNMLYLENNIV-------CEKENIA 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L    + +     +D   K    F   E    R             ++S 
Sbjct: 279 IKGIHNIENYLAAF-LATKDDVSIDVMKKVAERFGGVE---HRCELVREIDGVKYYNDSI 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            ++P    A +    +       + I + G   +           LAE    Y I  + L
Sbjct: 335 ASSPTRTLAGLFAFDK-------KVILIAGGYDKHIPFEP-----LAEEGYPY-IKELIL 381

Query: 407 SGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            G     +KDA  +        + +   +T++      +    +GDVV
Sbjct: 382 LGATKNLIKDAFVKLKEEKGIEVSISLVDTLEEAVFKAKDLADEGDVV 429


>gi|158321131|ref|YP_001513638.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141330|gb|ABW19642.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 882

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/499 (15%), Positives = 172/499 (34%), Gaps = 71/499 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILHAV-- 61
              + + +A +   +         GI+ID +  + P+    A++     G D     V  
Sbjct: 367 MNLNTIPKAGEIVYLRENDNLSTGGIAIDVTDEVHPENIKLALRAARIIGLDIAGIDVTT 426

Query: 62  --------QKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIA 112
                   + G  ++ VN      I     P  GV  +V   +  +           I++
Sbjct: 427 KDITKSISENGGAIIEVNACP--GIRMHHYPSKGVPRNVAKEIVNMLFPENAPHSVPIVS 484

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDV 160
           +TG+ GKTTT  M+   L           +   +I   L +              M   +
Sbjct: 485 VTGTNGKTTTTRMIAKILKMNNMVVGMTSTGGVYIDNELIVKGDTTGPRSAEIVLMDKHI 544

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLE 218
           D  + E   +  G +          + ++T I   H+     + +E++A  K+ + E ++
Sbjct: 545 DIAVLE--TARGGIVNKGLGYDLADVGLVTNIDDDHMGIDGINTLEDMADVKSLVLEAIK 602

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--- 275
             G   +N +D+F   +  ++       I  F +    +  +   KQ  +  +++ +   
Sbjct: 603 PEGYAIINAEDTFARRMAERARG----NIVYFSQCDTNELIIEHKKQGKKAIYLKEKKIC 658

Query: 276 ----------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                     ++ + +     GI  H  +N L  +     L  D+    + L  FH    
Sbjct: 659 IFDGNKEIDVIEIEKIPATLGGILEHNIENSLCAVAATFALGVDIHRIYEGLRDFHTDAV 718

Query: 326 RGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R+       F  ++D  Y  N       ++ L+++  +   R I V+G   +  ++
Sbjct: 719 HNMGRFNVFEVANFKVILD--YGHNIGGYNRVLNGLNKMKAN---RLIGVIGVPGDRTDI 773

Query: 385 SQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI------HVHYSETMDG 432
           S    + + E+   Y    V++       G +V  + + + +            +  +D 
Sbjct: 774 SI---LKIGELSGKY-FDQVYIKEDRDLRGRNVGQVAELIKKGCILGKLSEQQITTELDE 829

Query: 433 --LFLFIQSSLVDGDVVVV 449
                    +  +GD+++V
Sbjct: 830 RVALEKAMKNAKEGDIIIV 848


>gi|307289405|ref|ZP_07569359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|306499660|gb|EFM69023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|315165142|gb|EFU09159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1302]
          Length = 456

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 98/302 (32%), Gaps = 36/302 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I + +    T+ LN++    + L   + A     +  F   +       +     E   
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKE-----AVEGAYLLEG-- 259

Query: 272 MEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++    + +         G H  +N L  + +  +         + L+ F        R
Sbjct: 260 -KLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HR 315

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +           ++S   N  + + A+S           +++ +L    + G       
Sbjct: 316 TQFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL- 367

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVV 447
                V +L  +  + L G     L +A  ++    + ++E +              D +
Sbjct: 368 -----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTI 422

Query: 448 VV 449
           ++
Sbjct: 423 LL 424


>gi|50084464|ref|YP_045974.1| cyanophycin synthetase [Acinetobacter sp. ADP1]
 gi|49530440|emb|CAG68152.1| Cyanophycin synthetase [Acinetobacter sp. ADP1]
          Length = 914

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 134/406 (33%), Gaps = 59/406 (14%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV G +  +      +S+  I AITG+ GKTT   ML   L           +   +I 
Sbjct: 465 RDVGGKIMDMLFPQGSQSRVPIAAITGTNGKTTCSRMLAHILKMAGHVVGQTSTDAVYID 524

Query: 149 VPLTL---------ARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             +T+         A+M      VD  + E   +  G +R         +  +  ++  H
Sbjct: 525 GNVTVKGDMTGPVSAKMVLRDPSVDIAVLE--TARGGIVRSGLGYQFCDVGAVLNVSSDH 582

Query: 197 --LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
             L     ++ +A  K  I E  +   T+ LN D+++   +   S A   K I    +  
Sbjct: 583 LGLGGVDTLDGLAEVKRVIAEVTK--DTVVLNADNAYTLKMAGHSPA---KHIMYVTRDA 637

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKS-----------------MEVVHHGIGYHMAQNML 297
                    +       +E  L G                   +     G   H  +N +
Sbjct: 638 ENKLVREHIRLGKRAVVLEKGLNGDQIVIYENGTQIPLIWTHLIPATLEGKAIHNVENAM 697

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G+   L  ++D     L  F     +        ++  F +I + Y  N A++ A  
Sbjct: 698 FAAGMAYALGKNLDQIRIGLRTFDNTFFQSPGRMNVFDKHGFRVILD-YGHNEAAVGAMT 756

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------S 407
            ++ +++P   GRR+  +      G+      + +A  ++  +    +            
Sbjct: 757 ELVDRLNPR--GRRLLGVTCP---GDRRDEDVVAIAAKVAG-HFDEYYCHRDDDLRGRAP 810

Query: 408 GFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 ++DAL +       +H  E  +     + +     D+V+ 
Sbjct: 811 DETPKIMRDALIQLGVPESRIHIVEQEEDSLAAVLTEAQVDDLVLF 856


>gi|328947389|ref|YP_004364726.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
 gi|328447713|gb|AEB13429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
          Length = 531

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 113/315 (35%), Gaps = 40/315 (12%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              A+          +KA IIA+TGS GK++T   L+  L+         G+       P
Sbjct: 110 AAKAIETDISIFLRFTKAPIIAVTGSKGKSSTVSALSYGLNQAGFKCFLGGNITVS---P 166

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           L+           + EL    L ++R    L++P I++IT I P H + +  ++     K
Sbjct: 167 LSFLEKTDGTTPVVLELSSWQLADLRGR-KLLKPKISIITKIVPDHQNWYGDMDSYVEDK 225

Query: 211 AEIFEGLEKTGTIFLNYDDS---------------FFELLKAKSHALGIK---------T 246
             IF   +K     L++D+                + +L  +++ A  ++          
Sbjct: 226 KLIFADQDKNDFTILDFDEDNYLKETASPKRGCRCWGDLFASETKAKVLRYSKVLLPKGI 285

Query: 247 IYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +   + ++   R   +  + S  E  +  + +       G HM  N+L     + 
Sbjct: 286 FGAYLEKSGSSYKGVARVPSEFVKPSLKEKTVLEEVVMESLQVPGEHMRANVLNASLAMY 345

Query: 305 ILTADVDTAIKALSVFHPKEGRGKR---YRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++          +  +     R ++   ++   +       ++S +  P +  AAI    
Sbjct: 346 LMGVAPAQICTVMGQWKGIPHRLEKFYDWKSPSDGRKVVFYNDSCSTVPEACAAAIQSFD 405

Query: 362 QISPHGEGRRIAVLG 376
           Q       R + + G
Sbjct: 406 Q-------RVVLIAG 413


>gi|302868674|ref|YP_003837311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571533|gb|ADL47735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 448

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 130/387 (33%), Gaps = 40/387 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VVV +  V +     + +      +   + L +A         + +TGS GK+TT  
Sbjct: 71  AADVVVRSPGVPNTHPWMVELRRRSAPVTQGSALWMADHAD---RTVGVTGSKGKSTTSS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  L+++ +     G+    +           + +  + EL      ++        P
Sbjct: 128 LISHLLTAMDRPNVFGGNIGVPLLD-------LPEAELYVLELSSYQCSDL-----TDSP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T + P HL    G  E    K  +         + +N  D         +  LG 
Sbjct: 176 RVAVVTALFPEHLDAHGGEREYYRDKLNLIAHGPH--AVVVNGADPRL------AAELGD 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +     G                + + W  ++        V   +G H   N+ + L ++
Sbjct: 228 RAAVRAGSPDT-----THVATGPDGTQWFHLRDTPLFPRAVLPLVGRHNEGNLCVALAVL 282

Query: 304 SILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             L  DV     +L+V     +G   R     +    T +D++   +P +   AI     
Sbjct: 283 DALGVDVVARKDSLAVAVAEFQGLAHRLTEIADPSGLTFVDDTLATSPYAAMHAIDA--- 339

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                EGR + V+    + G         LA       +  V  SG  ++     LP S+
Sbjct: 340 ----YEGRPLTVIVGGADRGLDYSPLRAHLAG--REIRVIGVPDSGPRIVEALSGLP-SV 392

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ +       +     G VV++
Sbjct: 393 RTELADDLVAAVGLSRKLTPAGGVVLL 419


>gi|325956500|ref|YP_004291912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
 gi|325333065|gb|ADZ06973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
          Length = 459

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 114/351 (32%), Gaps = 39/351 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S+A  + +TGS GKTTT  +    L             +G+    I   +  A      D
Sbjct: 111 SEAPYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---D 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  +  +   V   + +   +   HL      E   +AK  +        
Sbjct: 168 ILVVEISSFQLLGVTDIDPKVAAIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQTSDD 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               NYD    + + AK   +    + +F +   NAD+ +   +    Q+   +++    
Sbjct: 225 YFIANYDQ---KDILAKEKKVSPAKMQTFSETDHNADYFIGD-EYLESQNEKIMKIAD-- 278

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  QN L+ +    I+ AD D  +  LS F    G   R +         
Sbjct: 279 ----IKLPGIHNLQNSLVAIATSKIMGADNDDIVAVLSTF---AGAKHRLQYVTTLDGRK 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           + ++S + N  +   AI    +      G            G        DL  +    +
Sbjct: 332 VYNDSKSTNIEAATVAIPAFKEPEVLIAG------------GLDRGFLFDDLVPLFKK-H 378

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 379 VKAIVLYGETKYLLADAARKAGVKDIVIVNTLQEAVPRAYELTEPGDVLLF 429


>gi|327534579|gb|AEA93413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis OG1RF]
          Length = 456

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 97/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTADDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L  F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|295698675|ref|YP_003603330.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Riesia
           pediculicola USDA]
 gi|291157111|gb|ADD79556.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Riesia
           pediculicola USDA]
          Length = 485

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 128/349 (36%), Gaps = 37/349 (10%)

Query: 124 EMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            M++  L          IG ++  +             +  + E+  SH   ++F     
Sbjct: 130 SMISEMLKNENFHPNYIIGGFSKSLKECAYWNERN---EIVVIEMDESHPIFLQF----- 181

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            P + ++T +   H++N+ +  +++     +  + L     + L  ++S    +    H 
Sbjct: 182 DPSVLIVTGLEVDHINNYENSFKKLKHTFLKFIQKLSHFSKVILCIENSAIRSIIKNIHC 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTL 300
                + ++G  K++ F++  ++Q   +    +     S      +  G H   N   T+
Sbjct: 242 ----QMITYGFRKDSHFRILSYEQKKNRCHFSILDPSHSIYSFQMNTPGVHNVLNATSTI 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFT--LIDESYNANPASMKA 355
            +  +     D   K++  F     R     ++      G F   L+   Y  +P +++ 
Sbjct: 298 ILGKLFGIKEDRIQKSIKCFKGVSNRLDFLGKFILKNQDGNFCKFLLISDYGHHPNAIRF 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLYNISHVWLSGFHVLA 413
            I     I    +  RI ++          + ++   ++ E + L  I+ +  SG   ++
Sbjct: 358 TIET---IRVGWKRNRIIMIFQPHRYTRFQKFYNYFLNVLEKVDLLLITEICSSGEREIS 414

Query: 414 ----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                     +K+    +  + + E  D L   ++  + + D+++V+S+
Sbjct: 415 KLNVFSFHQEMKNRKKNTSFLFFKE--DQLIDILKKVIQNKDIILVQSA 461


>gi|254282975|ref|ZP_04957943.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR51-B]
 gi|219679178|gb|EED35527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR51-B]
          Length = 442

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 126/371 (33%), Gaps = 36/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTTT  +L   L          +G    + GV   L       DF + E  
Sbjct: 93  VLAVSGTHGKTTTTSLLAWILEYAGMDPGFLVGGVPANFGVSARLG----GSDFFVVEAD 148

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  +P   +I  +   H   F  +  I      +   + + G I  +
Sbjct: 149 EYDTAFFDKRSKFIHYKPRTLIIGNLEYDHADIFPDLAAIEQQFHHLIRCVPEQGHIIHD 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVH 285
              +   +L+            + G+  + ++  +            ++   G+S  V  
Sbjct: 209 GSAAVQRVLERGCWTPAA----TVGQQPDCNWSWQVI--AGGGGEFVLKAPDGQSHSVTW 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N    +     +      A KAL+ F+  +   +R     + G  ++ D+ 
Sbjct: 263 PLFGAHNVANASAAMAAARHVGIAPRIAAKALADFNGVK---RRLEWRGSPGGVSVYDD- 318

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVL--SLYNIS 402
           +  +P ++   ++ +   +    GR IAV+         S +    + AE L  +     
Sbjct: 319 FAHHPTAIATTLAGMK--ARMEGGRLIAVIE------PRSNTMRAGVHAEALGPATEAAD 370

Query: 403 HVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS--CGF 457
            V+     G +    +              +D L   +  ++  GD VVV  SN    GF
Sbjct: 371 RVFWFEPPGLNWALERIVSEDPDRSSRIADIDALVGVVVDTVRPGDTVVVM-SNGGFSGF 429

Query: 458 -YRLINLLLEE 467
             RL+  L   
Sbjct: 430 HDRLLEALQNR 440


>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 454

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 111/316 (35%), Gaps = 28/316 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A I+A+TG+ GKTTT  +L   + +  +  A  G+    +   +T   +P      + 
Sbjct: 109 TDAAILAVTGTNGKTTTTTLLGEMVKASGRQTAVGGNIGVGLAQAVT--DLPPQA-VAVA 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     LT  +    AVI  I P HL     +E  ++AK  IF   E T T  L
Sbjct: 166 ELSSFQL----ELTSSLHAVGAVILNITPDHLDRHHTMEAYSAAKERIFSNQEATDTAVL 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NYDD     ++A+     +    + G+     F               +  +        
Sbjct: 222 NYDDDRVRNMQARRKG-KVVFFSTQGEVPEGTFYKDHQLMLRHDGTDTLICRDSD----L 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN L  + + + +   +      L  F   E R ++ R           ++S
Sbjct: 277 QLFGAHNIQNCLAAVLLATAVAIPLPVIRSVLKRFRGVEHRLEKVRVLQ---GVPYYNDS 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+   S       G  I + G   +M  L  +F       L+   +  + 
Sbjct: 334 KGTNVDASIKALEAFS-------GHLILIAGGHDKMTPL-DAFMK-----LAARKVDTLI 380

Query: 406 LSGFHVLALKDALPRS 421
           L G        A  ++
Sbjct: 381 LVGESADRFAAAAKKA 396


>gi|194367073|ref|YP_002029683.1| UDP-N-acetylmuramate [Stenotrophomonas maltophilia R551-3]
 gi|194349877|gb|ACF53000.1| UDP-N-acetylmuramate [Stenotrophomonas maltophilia R551-3]
          Length = 454

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 126/361 (34%), Gaps = 36/361 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                +A+ G+ GKTTT  +LT  L S  ++    IG      GV   L +        +
Sbjct: 102 PGRDTLAVAGTHGKTTTTTILTWLLESAGRSPGFLIGGVAEDFGVSARLGQG----REFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP +A++  +   H   F  +  I      +   +   G 
Sbjct: 158 VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPARGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           + +N +D     + A         +  FG   + ++        ++ S   V  +G+++ 
Sbjct: 218 LIVNGEDPHLAEVLAMG---CWTPVERFGFDPSLEWHAELL--AADGSAFRVHHRGQALG 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G H   N L  L     +       I AL+ F   +   +R     +    T+
Sbjct: 273 DVQWSLLGRHNVLNGLAALAAAHAVGVAPAEVIPALAHFRSVK---RRMEVIGSHDGITV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFHIDLAEV 395
            D+ +  +P ++    + L  +       RI V   M        +G  +Q+    LA  
Sbjct: 330 YDD-FAHHPTAIA---TTLEGLRAKVGDARIVV--AMEPRSNSMRLGAHAQALAPSLA-- 381

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                   V+L    +     A+  ++    H     D L   +QSS+  GD VV   SN
Sbjct: 382 ---LADEVVFLHRPELAWDAAAVVAAVRGEAHAVPDTDALLAQLQSSVRSGDHVVFM-SN 437

Query: 454 S 454
            
Sbjct: 438 G 438


>gi|92113241|ref|YP_573169.1| cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
 gi|91796331|gb|ABE58470.1| Cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 879

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 111/294 (37%), Gaps = 35/294 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM---------- 156
           +  I+A+TG+ GKTTT  +++  L    ++     +    I   + L             
Sbjct: 481 RIPIVAVTGTNGKTTTVRLISHLLRQAGRSVGMACTGAIEIDNHVILRGDYSGPQAASIV 540

Query: 157 --PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAE 212
                V++ + E+     G +R        H+ V+  IA  HL   +   ++E+A  K+ 
Sbjct: 541 LREPTVEYAVLEVA--RGGIMRRGLGFDECHVGVLLNIASDHLGESDIHTLDELARCKSV 598

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF---GKSKNADFQLRKWKQCSEQ 269
           + + + K+GT  LN DD    +L ++  A G    ++      +  A  +         +
Sbjct: 599 VIDAVGKSGTAVLNADDP--RVLASREWARGDVIFFTLDPESPTVRAHVRDHGVAFTVHR 656

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---------VSILTADVDTAIKALSVF 320
             + ++ QG     +       +    L +  +            L   +    + L  F
Sbjct: 657 DHIVMR-QGHVEAEIIPVANAPITFEGLASFNVANALAASAAAHALGLGIADIQRGLQTF 715

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           HP  G+       ++ G   ++ + Y  N  +++A   ++++I      RR+ V
Sbjct: 716 HPTPGQNPGRTNLIDAGGMKVLID-YGHNVPALEALSELVNRIPAQ---RRLCV 765


>gi|118594248|ref|ZP_01551595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
 gi|118440026|gb|EAV46653.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
          Length = 453

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 126/369 (34%), Gaps = 36/369 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-----CIGSYNNHIGVPLTL 153
            +   L     ++A+ G+ GKTTT  ML   L S             G++++   +P   
Sbjct: 94  WLYENLLHDKWVLAVAGTHGKTTTTAMLAWILESNGLAPGYLIGGVPGNFSSSARIPDNT 153

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKA 211
           ++      F + E            +  V   P   ++  +   H   F  +E I     
Sbjct: 154 SKNAPS--FFVIEADEYDTAFFDKRSKFVHYHPRTLILNNLEFDHADIFDDLEHIKKHVH 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   + + G I  N +      L+          I  F   K        ++   ++  
Sbjct: 212 HLVRTIPEHGRIICNAE---SRALEETIKMGLWSEIEYFSHDKE-----WSYQWQEDKQS 263

Query: 272 MEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +++  Q K    +  + IG+H A N L  +     +      +I+ALS F   +   KR 
Sbjct: 264 IDIFYQAKKQGSLTWNLIGHHNASNALAAIAAARHVGVSPAQSIQALSSFKGVK---KRM 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQ 386
                      I + +  +P++++  +  L+Q      GR + V+      M  +G +  
Sbjct: 321 EKIAQLKNGVQIYDDFAHHPSAIQTTLKGLNQTKKS--GRIVVVIEPRSNTMK-LGSMKT 377

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGD 445
                   ++SL     V+    ++      L +       S+ ++ +   I  +    D
Sbjct: 378 DL------LMSLEVADQVYCYTNNLTWDAHKLFKGYPKAIVSDNINDIAQAIVDNHQSKD 431

Query: 446 VVVVKSSNS 454
            ++   SN 
Sbjct: 432 HIIFM-SNG 439


>gi|146291932|ref|YP_001182356.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
 gi|145563622|gb|ABP74557.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
          Length = 464

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 127/363 (34%), Gaps = 47/363 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSACLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G I   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLIRTVPGEGKIIWP 223

Query: 227 YDDSFFEL------LKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            D    +          + H    ++I   +GK+ + D               EV   G+
Sbjct: 224 VDVQAVKQTIDMGCWSEQEHYHTAESITGWYGKALSDDCHC-----------FEVFFDGE 272

Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           S  V+    IG H  +N +M +     +      AI+AL+ F P +   +R         
Sbjct: 273 SQGVLEWDLIGQHNIENAIMAIVAARHVGVKPSAAIEALAQFIPPK---RRLELLGTVNG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAE 394
            ++ D+ +  +P ++    + L  +       +I V+     +   S +     H D   
Sbjct: 330 ISVYDD-FAHHPTAIA---TTLKGMRAKVGQSKIIVV-----LEPRSNTMKSGVHKDTLA 380

Query: 395 VLSLYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             S+      +L     +   +K+A+  S I V     +D +   + ++   GD +VV  
Sbjct: 381 Y-SMMQADEAFLYQADTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVVM- 438

Query: 452 SNS 454
           SN 
Sbjct: 439 SNG 441


>gi|319760284|ref|YP_004124222.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318038998|gb|ADV33548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 446

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 127/348 (36%), Gaps = 34/348 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 IIAITGS GK+T  +++             +G+          L  +  +    
Sbjct: 103 REITVPIIAITGSNGKSTVTQLVGNMARYAGWKVGIVGNIGIP-----ALTLLNNNYQLY 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGT 222
           I E+    L     +T+ +    A I  ++  H+    +GI + +S+K  I+       T
Sbjct: 158 ILEISSFQLD----VTYSLCAAAATILNVSEDHMDRYAAGIVDYSSSKNRIYNN---AIT 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N+ D           +     + SFG   N AD++    + C  ++W+ V      +
Sbjct: 211 CVINFLDPL-----TYPVSCNYGRLVSFGVDSNSADYR---IEYCKGKAWI-VIYGEYIL 261

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     I  H+     +   +    + ++       S      G   R++          
Sbjct: 262 DCFELHINCHINYYANILSALALSDSVNIPRMASLQS-LRYFSGLSHRFQLIYTNRNVKW 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N A+ K AI+    +S    G    +LG     G+   +   +L  +++ Y I
Sbjct: 321 INDSKATNVAATKIAINA--ALSILASGDLHLLLG-----GDGKLANFFELTALITKYEI 373

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            H++  G     L  +  ++I +  +  +      I   +   D+V++
Sbjct: 374 -HLYCFGKDGFFLTKSGSKNIFL--TNDIIDAMNIICRRVRRKDIVLL 418


>gi|319764337|ref|YP_004128274.1| udp-n-acetylmuramate [Alicycliphilus denitrificans BC]
 gi|317118898|gb|ADV01387.1| UDP-N-acetylmuramate [Alicycliphilus denitrificans BC]
          Length = 463

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 126/375 (33%), Gaps = 41/375 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YNNHIGVPLTLARMPVDVDFGIF 165
            ++A+ G+ GKTTT  ML   L         +      N  I   L            + 
Sbjct: 112 HVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGISARLGALAAGQARPLFVI 171

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  AV+  +   H   F  + +I      +   +  +G +
Sbjct: 172 EADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLGQIERQFHHLVRTVPPSGRV 231

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N      E L    HA     + SFG +  +DF  R      E    EV  +G+++  
Sbjct: 232 VVNG---LEESLARVLHAGCWSGVASFG-AAVSDFCAR-----GEPHDFEVLQRGQAVAR 282

Query: 284 V-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V     G H   N L  +     +      A +AL+ F       +R          ++ 
Sbjct: 283 VQWALTGVHNQLNALAAIAAAEHVGVAPAQAAQALARFENVR---RRMELRGTARGISVY 339

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQSFHIDLA 393
           D+ +  +P +++  +  L +    GE R +AV         LG M             L 
Sbjct: 340 DD-FAHHPTALRTTLDGLRR-RVGGEARILAVFEPRSNTMKLGTMK----------SQLP 387

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             L   +++    +G    A +   P       +  +  L   + ++   GD ++   SN
Sbjct: 388 WALEQADLAFCHTAGLDWDAAEALAPMGARARTAADIPTLVAQVSTAAQPGDHILCM-SN 446

Query: 454 SCGFYRLINLLLEEF 468
              F  +   LLEE 
Sbjct: 447 GS-FGGVHAKLLEEL 460


>gi|323341702|ref|ZP_08081935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464127|gb|EFY09320.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 424

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 118/357 (33%), Gaps = 46/357 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           N++ +A+R  + A   AI+G+ GKTTT   L   L          G+    +   +   R
Sbjct: 84  NEIEIASRFANHAKFYAISGTNGKTTTTTCLHEMLLKKDSAALLAGNVGYALSEAIY--R 141

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                     E+    +      T    P +  +  ++P H+  +  +++   AK  I  
Sbjct: 142 DGDLTRDVALEISAFQMEG----TPTFSPEVYALMNLSPDHMDRYDEVDDYYKAKLNI-- 195

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEV 274
            L    T   N DD     L           +Y    + +AD  LR+ W    +    EV
Sbjct: 196 -LPNVKTFIRNCDDQNIMRLTQDYQG----KVYDLSMTHDADICLREGWVYFLDNPLFEV 250

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                        +G H   N      +  +    +      +  F   E    R     
Sbjct: 251 S--------SLKLVGKHNLMNAAFAASLAFLAGVKLSDIRDVIHTFSGVE---HRIEFVD 299

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   NP S +  +    +         I + G            HI   +
Sbjct: 300 EVDGVRYYNDSKATNPESTEVCLQAFEK-------PIILLAGGF--------DKHISF-D 343

Query: 395 VLSLY--NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L  Y   I  +++ G     +++  P +I V   +TM   F+  +S    GD++V+
Sbjct: 344 LLKPYENRIKILFVFGESADQIREVFPFAIKV---DTMKTAFVEAKSQASSGDIIVL 397


>gi|260655415|ref|ZP_05860903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
 gi|260629863|gb|EEX48057.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
          Length = 438

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 127/347 (36%), Gaps = 43/347 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+TG+ GKTTT  +L   L    ++ A +G+    +      A     VD+ + E
Sbjct: 102 PGKTIAVTGTNGKTTTTALLGHLLRCRGQSVAVVGNIGEPLANAAGTA-----VDYTVME 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L           P +A++T +AP H+      E   + K ++F    K       
Sbjct: 157 LSSFQL----HWNKSFTPQVALLTNLAPDHIDWHGSYENYVADKLKVFGRPGKG------ 206

Query: 227 YDDSFFELLKAKSHAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +E+++A+  AL     ++ + G ++             E+     +L  +S    
Sbjct: 207 ----NWEIVQARDAALVPSGGSVCTLGGTEGTRIYWDDQAVWLERDSGREKLFDRS---Q 259

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H  +N  M         A +D +   L           R +    +   T +D+
Sbjct: 260 LSLVGQHNLENAAMA----GAALALIDKSFAPLQGLSDFLPPPHRCQLVRVRRGVTWVDD 315

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS + A+          +G +I +LG     G+     +  LA+ +      +V
Sbjct: 316 SKGTNVASTRTALE-------GIDGPKIIILG-----GKGKGEKYETLAQTVKAR-ARNV 362

Query: 405 WLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     ++ AL  +    +H +  M+ +          GD V++
Sbjct: 363 ILIGAESDKIEAALREAGVQSIHRTSCMEEVVSTADGLARPGDTVLL 409


>gi|167855430|ref|ZP_02478195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parasuis 29755]
 gi|167853424|gb|EDS24673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parasuis 29755]
          Length = 462

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 142/422 (33%), Gaps = 47/422 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   +   S P +  D +L                 ++A++G+
Sbjct: 70  IGNAISRG--NPCVEHILNHRLPYTSGPQWLRDHLLK-------------DRWVLAVSGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML+  L          G     +     ++      DF + E          
Sbjct: 115 HGKTTTTGMLSWILDQAGIDT---GFLIGGVAGNFGISARAGSSDFFVIEADEYDSAFFD 171

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P   +I  I   H   F  ++ I      +   + + G I     D   + 
Sbjct: 172 KRSKFVHYNPKTLIINNIDFDHADIFDDLKAIQRQFHHLIRTMPQNGCILSATSDENVQN 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293
                     + I      ++ D+        S+ S   +   Q K+ EV  + +G H  
Sbjct: 232 TLKMGCYSEQQFI-----GQDQDWYAE--PLSSDYSHFAIYHKQQKAGEVKWNLLGAHNM 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N LM +         V+ A   L+ F       +R          T+ D+ +  +P ++
Sbjct: 285 HNGLMAIAAAHHAGVSVEQACLGLNSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LS 407
            A I  L       E R +AVL    E    +     H  ++A  L   +   V+     
Sbjct: 341 LATIDALRG-KVGKEQRILAVL----EPRSNTMKMGVHKEEIAPSLKDADAVFVYQPDTI 395

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + V  + DAL +     +S ++D L   I       D ++V  SN   F  +   LLE 
Sbjct: 396 PWQVSTITDALSQ--PAQWSTSLDELVELIVKEAKPTDHILVM-SNG-AFGGIHQKLLER 451

Query: 468 FP 469
            P
Sbjct: 452 LP 453


>gi|116494762|ref|YP_806496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           ATCC 334]
 gi|239631641|ref|ZP_04674672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301066323|ref|YP_003788346.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
 gi|122263820|sp|Q039R8|MURD_LACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116104912|gb|ABJ70054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei ATCC 334]
 gi|239526106|gb|EEQ65107.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438730|gb|ADK18496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
          Length = 459

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 32/326 (9%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + L+  +  +A   + N  I V     ++  D D  + EL    L  I+ L     P
Sbjct: 129 LIGLMLNQQRPHHA-FDAGNIGIPVSQVAQKVGKD-DTIVAELSSFQLCGIKTL----HP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL          +AK  I           +N+D      L  +S A   
Sbjct: 183 HIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHELAKQSKA--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  F +      + +         W+                G H  +N L  +  V 
Sbjct: 240 -QIVPFSRKNAEGARAQLID-----GWLTFDGDRIMKASEMQIPGLHNIENALAAIAAVK 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D   + L  F   +    R +         + ++S   N  +   A++   Q  
Sbjct: 294 LEGVGDDAIREVLRTFSGVK---HRIQYLETIDGRRVYNDSKATNVEAATVALNAFDQ-- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
                  I  L    + G       +D    L   ++  + + G     +        + 
Sbjct: 349 ------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTAPLMAKIAKDAGVP 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V  +E +             GDV+++
Sbjct: 398 VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|168048570|ref|XP_001776739.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671888|gb|EDQ58433.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 680

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 160/478 (33%), Gaps = 94/478 (19%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           G++ +  A      +++       S      P  G         +     ++     +IA
Sbjct: 193 GNEEVEAARALNVPIILERPHANDSESGWHFPYAGRSCSYK---RGDWLGKITEGYQLIA 249

Query: 113 ITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-- 169
           + G+ GKTTT  ML++ L ++ +   A +G+         +   +       + E  +  
Sbjct: 250 VAGTHGKTTTTAMLSVVLRNLGEDITAIVGAQVPQFPDGGS--ALCGTTRKFVLESQVRP 307

Query: 170 -------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--------------------- 201
                  S   E       V PH+AV+T +   H+  F                      
Sbjct: 308 VLWFHKFSEADEYDGCFLGVSPHLAVLTNVEWEHVDMFPDERGCLLNVTPSIDLFDQPLI 367

Query: 202 -GIEEIASA-----KAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGI-----K 245
             +E I          +    ++  G +    D +  + +     + +   LG      +
Sbjct: 368 VSMENILQEAVKNMFKKFVLQIKPGGCLVACGDSAGAKSVLGLIEEEQEKDLGSPFPRER 427

Query: 246 TIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIV 303
            + +FG    +D++        +  +   V  + + M  V     G +   N L  + ++
Sbjct: 428 RVVTFGLGA-SDWRAIMLVPNPQGGTDYTVVYKNRPMTRVSLRLPGMYNVLNSLAVIVVM 486

Query: 304 SILTADVDTAIKALSVFHPK------------EGRGKRYRCALNQGFFTLIDESYNANPA 351
           S+L A+ ++ + A +    +             G  +R+    +     +ID+ Y  +P 
Sbjct: 487 SLLAAEKESDVGAQAKLMKRTAEAAGRALGAFSGVRRRFDFVGSVHGCHIIDD-YAHHPT 545

Query: 352 SMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++A +    Q            PH   R  A L D       S +  + + +V +  NI
Sbjct: 546 EVRAVLQAARQRYDQQPIWVIFQPHTVSRLAAFLPDFA--PAFSAADRVIVTQVYAARNI 603

Query: 402 -SHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVD-GDVVVV 449
            +   ++G     L +A+       Y   +D         L    ++ + D G++V++
Sbjct: 604 PTEKVVTGED---LANAI-IGPPAVYIPDLDVVVERLSWELAALDKNEMNDRGNIVLL 657


>gi|190575732|ref|YP_001973577.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Stenotrophomonas maltophilia
           K279a]
 gi|190013654|emb|CAQ47289.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Stenotrophomonas maltophilia
           K279a]
          Length = 454

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 124/361 (34%), Gaps = 36/361 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                +A+ G+ GKTTT  +LT  L S  ++    IG      GV   L +        +
Sbjct: 102 PGRDTLAVAGTHGKTTTTTILTWLLESAGRSPGFLIGGVAEDFGVSARLGQG----REFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP +A++  +   H   F  +  I      +   +   G 
Sbjct: 158 VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPARGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N +D     + A         +  FG   + ++        ++ S   V  +G++M 
Sbjct: 218 LIVNGEDPHLAEVLAMG---CWTPVERFGFDPSLEWHAELL--AADGSAFRVHHRGRAMG 272

Query: 283 VVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            VH   +G H   N L  L     +       I AL+ F   +   +R          T+
Sbjct: 273 DVHWSLLGRHNVLNGLAALAAAHAVGVAPADVIPALARFRSVK---RRMEVIGRHDGITI 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFHIDLAEV 395
            D+ +  +P ++    + L  +       RI V   M        +G  +Q+    LA  
Sbjct: 330 YDD-FAHHPTAIA---TTLEGLRAKVGDARIVV--AMEPRSNSMRLGAHAQALAPSLA-- 381

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                   V+L    +     A+  ++    H     D L   +Q+S   GD VV   SN
Sbjct: 382 ---LADEVVFLHRPELAWDAAAVIAAVRGEAHAVPDTDALLAQLQASARSGDHVVFM-SN 437

Query: 454 S 454
            
Sbjct: 438 G 438


>gi|88811840|ref|ZP_01127093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrococcus mobilis
           Nb-231]
 gi|88790724|gb|EAR21838.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrococcus mobilis
           Nb-231]
          Length = 445

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 95/279 (34%), Gaps = 28/279 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TG+ GK+T   +L     +     A  G+        L L ++P  V   + EL 
Sbjct: 107 PVLAVTGTNGKSTVTALLGEMARAAGLNVAVGGNLGPP---ALELLQLP-QVQLFVLELS 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L       + +    A +  IAP HL  +  I     AKA IF G    G + LN D
Sbjct: 163 SFQL----ESVYSLNAQAASLLNIAPDHLDRYPNIAAYLEAKAVIFRG---DGVMILNAD 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHG 287
           D     L     A   +    F  +   D +         +SW   + + +         
Sbjct: 216 DPAVCAL-----ASAGRETLYFTLAAPVDARTFGIDYWGGESWF-CRGRNRLAPCAAFQP 269

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L  L + S       +    L       G   R    +       I++S  
Sbjct: 270 VGRHNQANALAALALGSAAGL---SLSALLQGLQTFRGLPHRMEPVIEHDGVLWINDSKG 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            N  +  AA++ L       E   I +LG   +  + + 
Sbjct: 327 TNVGATLAAVAGL-------ERPLILILGGQGKGQDFTA 358


>gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
 gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
          Length = 508

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 24/267 (8%)

Query: 97  KLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           ++ +A RLR    + A  IAITG+ GKTTT ++    LS+       +G+    +   + 
Sbjct: 111 EIELAWRLRDKTGTPAEWIAITGTNGKTTTAQLAAHILSTAGFRAGAVGNIGIPVLDAI- 169

Query: 153 LARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             R P   DF + EL    L  + R     + P  +V   IA  HL         A+AKA
Sbjct: 170 --RYPDGFDFLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDWHGSRAAYANAKA 227

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQL-------RK 262
            ++           N        +   +  +       FG      +DF +       R 
Sbjct: 228 TVYANTRI--AAVYNRAVPSTLAMVEDADVIEGCRAIGFGLDTPGPSDFGIVSDLLADRA 285

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +         E+    +           HM  N+L    +       ++     ++ F  
Sbjct: 286 FGDDRHNVADELFTLDELRHNGLSAP--HMIANVLAASALTRAAGVSIEALRAGVASFET 343

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNAN 349
                 R +  L  G  + +++S   N
Sbjct: 344 ---DAHRNQLVLLSGGVSWVNDSKATN 367


>gi|78211584|ref|YP_380363.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9605]
 gi|109892751|sp|Q3ANM4|MURC_SYNSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78196043|gb|ABB33808.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. CC9605]
          Length = 469

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 139/396 (35%), Gaps = 55/396 (13%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSY 143
           ++   D+L AL +         +   IA+ GS GKTTT  ++T  L    +   A IG  
Sbjct: 102 IWHRSDLLAALIE---------QQPSIAVAGSHGKTTTSTLITTLLLEADQDPTAVIGGI 152

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
              +G      +  +     + E   S    ++F      P + VIT +   H  ++S +
Sbjct: 153 VPSLGSNGHSGQGKL----LVAEADESDGSLVKF-----SPSLGVITNLELDHTDHYSCL 203

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +++ S       G ++   +  N+D    +     +        +S    ++ DF     
Sbjct: 204 DDLISTLQRFAGGCDR---VLANHDCPILQEHFQPTAW------WSNQSDESVDFAALPL 254

Query: 264 KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++        G+ + +      G H   N    L    +     +  ++ L+    
Sbjct: 255 SLDGDRCVARFYEAGQPVGDFTLPMAGLHNLSNATGALAACRMEGLPFNQLVEGLAGL-- 312

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-------PHGEGRRIAVL 375
            +  G+R+          ++D+ Y  +P+ ++A + +   +        P    R +AV 
Sbjct: 313 -KAPGRRFDLRGTWKGRHIVDD-YAHHPSEVQATLEMARLMVRSGRSPLPSAPQRLLAVF 370

Query: 376 GDMCEMGELSQSF---------HIDLAEVLSLYNISHVWLSGFHVLALKD---ALPRSIH 423
                    ++ F         + DL  +  +Y      L G    AL D    L   + 
Sbjct: 371 --QPHRYSRTRQFLDGFAKALQNCDLLLLAPVYPAGEQPLQGISSNALADRVRKLKPDLE 428

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFY 458
           +  +E +D L   +    ++ D+V+   +    G +
Sbjct: 429 IAVAENLDQLTELVIQHSLENDLVLAMGAGDVNGLW 464


>gi|57237940|ref|YP_179188.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni
           RM1221]
 gi|68565682|sp|Q5HU47|MURC_CAMJR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|57166744|gb|AAW35523.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni RM1221]
          Length = 431

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 130/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L     Y     KN   ++  +K     + 
Sbjct: 191 AYAEFLDTAKIRVINAEDEFLKNYKNESTKL-----YPSKDIKNCTMRIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILYADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LA---EVLSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A   E +    I  V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFESIDELVILPVYAAGEEPIELDLKAVFPKALFVE 392


>gi|150389045|ref|YP_001319094.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149948907|gb|ABR47435.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 887

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 150/431 (34%), Gaps = 49/431 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  ++++  G V+                    +V  ++  +   A       I ++TG+
Sbjct: 429 ISQSIRQVGGAVIEVNACPGIRMHHHPSEGQSRNVAASIVNMLFPAEKPFTIPIFSVTGT 488

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLARMPVDVDFGIFE 166
            GKTTT  ML   L           +   ++            P +   + +D    +  
Sbjct: 489 NGKTTTTRMLAKILRQNGLVVGMTSTGGIYVQDELICGGDATGPRSAESILLDNRVEVAV 548

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIF 224
           L  +  G I          I +IT I   HL     + +EE+A  KA + E +   G   
Sbjct: 549 LETARGGLINKGLAYDLADIGIITNIGNDHLGMDGVNTLEEMADVKALVTEAIRPQGYAI 608

Query: 225 LNYDDSFFELLKAK--------SHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQ 275
           LN +D F E +  +        +  +  K I     + + A +      Q  +    +  
Sbjct: 609 LNAEDKFVERIAQRITCQILYFAKDMNNKVIKDHVNRGEKAVYIKDDIIQVFDGEKEKPV 668

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCAL 334
           +  +++   + G+  H  +N L  +          D   K LS F         R+    
Sbjct: 669 IHVENIPATYGGVLIHNIENSLAAVAAAFGHGIKTDVIAKGLSQFQTDASTNPGRFNIFE 728

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +    +ID  Y  N    +  +  L  +  +   R I V+G   +  ++S    + + E
Sbjct: 729 MEKCRVVID--YGHNIDGYQKVLEGLKLMKKN---RLIGVIGVPGDRTDIST---LKIGE 780

Query: 395 VLSLYNISHVWLS------GFHVLALKDALPRS----------IHVHYSETMDGLFLFIQ 438
            +S  +  HV++       G +   + + + +           I + + E +  L   ++
Sbjct: 781 -ISGKHFDHVYIKEDKDLRGRNPGEVANLMKKGCALGGLKEEEIQIEHCE-IKALQKALE 838

Query: 439 SSLVDGDVVVV 449
           S+   GD+++V
Sbjct: 839 SA-QQGDIIIV 848


>gi|89892892|ref|YP_516379.1| hypothetical protein DSY0146 [Desulfitobacterium hafniense Y51]
 gi|89332340|dbj|BAE81935.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 885

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 109/344 (31%), Gaps = 47/344 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D V   G+  IPV  V    G      +  ++     +     +VG TTT  +       
Sbjct: 470 DHVMPKGNGRIPVISVTGTNGKTTTTRMIGKMLMDREL-----AVGMTTTDGIY------ 518

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +       G         + L     DV   + E   +  G +R         +AV+T +
Sbjct: 519 VGGKLLLKGDTTGPESAQIVLR--HPDVQVAVLE--TARGGILRAGLAYDYADVAVVTNV 574

Query: 193 APAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           A  HL  +    +E+IA  K+ I E +     + LN DD        K+       +  F
Sbjct: 575 ANDHLGQYGMESLEDIAHVKSLIAEVVRPHSYVVLNADDPLVASFARKTKG----KVIFF 630

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG----------------KSMEVVHHGIGYHMAQ 294
              K+    L   K  +         +G                K + V  +G   H  Q
Sbjct: 631 STEKDN---LTIRKHLAVGGIAVFVRRGNILLCQGDQSHKICGVKDLPVTWNGKALHNLQ 687

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    +    +LS F       +        G   +  + Y  N A +K
Sbjct: 688 NALAAIAVGWSLGLKAEGIRISLSEFTSDPECNRGRLNPYTIGGVQVFID-YGHNAAGIK 746

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           A    L +          AV+G +   G+       ++A V + 
Sbjct: 747 AIAQTLRKFKAP------AVVGCVTVPGDRPDETIREVARVAAR 784


>gi|124515890|gb|EAY57399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           rubarum]
          Length = 487

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 129/394 (32%), Gaps = 32/394 (8%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+V+  +     +       + +V+G +   +      +   ++A+ G+ GK+TT  +L 
Sbjct: 79  VIVSPGVPPRKWAGQEAPLYIRNVMGEMEWASSW----TAVPLVAVGGTNGKSTTSALLA 134

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPH 185
             L +  +     G++   +   +   R          + EL             + RP 
Sbjct: 135 HFLEAAGERVFLGGNFGTPLSDMVLSERRGSSPLPTVAVVELSSFQ----AETMGIFRPV 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++  I P HL  +  ++   +AK   F+ +EK     LN D +    +      +  +
Sbjct: 191 VNLLLNITPDHLDRYLSVDHYRNAKWNAFQTMEKESFTVLNRDPACG--VYPPFSPISSR 248

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQG-KSMEVVH---HGIGYHMAQN----M 296
             + +G       +        +     +  ++G   +          G    QN    +
Sbjct: 249 LAWFYGSKGPCPDRTGGLILERDALSATLDGIEGLPPISWNLEKFPLEGMGNRQNLAAAL 308

Query: 297 LMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           L  +  +       +              G   R            I++S   N  + + 
Sbjct: 309 LGAVLYLKATGKHPEQVTTVLEEAAASFRGLPHRMEVVGEWKGIRFINDSKATNVDATRL 368

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+   +  SP        +LG     G    + +  L E +   ++  + + G     ++
Sbjct: 369 ALEGYAGHSPFVH----LILG-----GRDKGAPYAPLREGIRT-SVKSIAVLGEARDKIR 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L   + +   E+++           +GD V++
Sbjct: 419 EELGSLVPLRMCESLEEAVDVAAGQASEGDRVLL 452


>gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 517

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 148/433 (34%), Gaps = 54/433 (12%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + IQG      P           GI+ D+R + P       KG  +   +++    + 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPDAL-LCCKG-QFKA-EYLNGIDEA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           G    V  T+  A+  +   P   V+D   A++ L+       +++ T+I +TG+ GKTT
Sbjct: 75  GLAAYVAETEYSAATAT---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTT 131

Query: 122 TKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDV-----DFG 163
           T       ++++     A   S +N +     +             RM  +       + 
Sbjct: 132 TSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYL 191

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTG 221
           + E+        R   + +   +A    I+P H+S       E+    K +I    +   
Sbjct: 192 VMEVSSQAYKVDR--VYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIVNAKS-- 247

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------NADFQLRKWKQCSEQSWMEVQ 275
            + L  D    +LL+  + A GI  + +F          +AD     W      +   + 
Sbjct: 248 -LVLGADSLHADLLREDAEAAGIG-VTTFALHDADNAGTSADVVA--WPADPAHASFHIA 303

Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +++   H  I G     N    + I   +   +D A  AL         G+  +   
Sbjct: 304 DGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDA-DALHAIESVRIAGRMEQFRD 362

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q     I + Y  N AS+ A +  + +       R   V G     G  +     ++ E
Sbjct: 363 PQSNTLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGS---AGNKAYDRRKEIVE 418

Query: 395 VLSLYNISHVWLS 407
                  + ++ +
Sbjct: 419 AAENRIANFIFTA 431


>gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 121/356 (33%), Gaps = 34/356 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  + +  R+  +A I+AITGS GK+T   ++     +     A  G+          L 
Sbjct: 94  LGDIELFGRIT-RAPIVAITGSNGKSTVTTLVGEMARAAGLRAAVGGNLGTPALDL--LP 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + D  + EL    L       H   P  A I  ++P HL         A+AK  IF
Sbjct: 151 ETGPEPDLYVLELSSFQLA----ACHDFHPRAAAILNLSPDHLDWHGDYAAYAAAKTRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +    T+ LN  D+F   L  +  A     +  FG +   D  +   + C       +
Sbjct: 207 RAMGAGDTLVLNAGDTFTAALPPQVPA--GVRVQFFGGADEHDASIAGDRLC-------L 257

Query: 275 QLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +  G  +++    + G H A+N L    +   +   V    +AL  F    G   R    
Sbjct: 258 RSDGPLLDLDQLPLRGAHNAENALAAALLARAMAVPVTAIRQALRTF---PGLPHRLARI 314

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 +  D+S   N  +   A+S L        G  + +LG   +  +LS        
Sbjct: 315 AEINGVSYYDDSKGTNLGATLKAMSGL-------PGPLVMILGGDAKGADLSPLRE---- 363

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +      V + G     +   L   + V  +  M             GD V++
Sbjct: 364 ---ACRGQRGVVVLGKDGPQISALLAGILPVESARNMAQAVEKAAVLAQRGDQVLL 416


>gi|86607791|ref|YP_476553.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|118595698|sp|Q2JHP5|MURD_SYNJB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86556333|gb|ABD01290.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 480

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 125/370 (33%), Gaps = 42/370 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +  +  ++ ++    IPV G  ++         A         + ITG+ GK+TT  ++ 
Sbjct: 72  IAWDHPLLQAVRQQGIPVVGEAEL---------AWIYLDHLPWVGITGTNGKSTTTALVA 122

Query: 128 IALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFGIFELGMSHLGEIRFL---THLVR 183
               +        G+    +  V L   +  +  D+ + EL    L     L   T    
Sbjct: 123 EMFKAAGLQGIPCGNIGLPLSQVALATLQGKLKPDWIVAELSSYQLEASSRLMSSTPGGP 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V TT  P HL     +E  AS KA +   L++     LN +D +            
Sbjct: 183 PRIGVWTTFTPDHLERHGTLERYASFKARL---LDRAQWRVLNGEDPYLCR-----RRQD 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EVVHHGIGYHMAQNMLMT 299
            +  Y    +       +      +     + +QG+ +    +      G H  QN+L+ 
Sbjct: 235 WEKTYWISLAAPQLCCDQDPTATLDLRENRLYIQGEMVAELEDFAERCPGQHNLQNLLLA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS 358
                +         KA+  F     R +R  +  +       +++S   N  +   A++
Sbjct: 295 AAAARLAGLPNVAIQKAIRSFAGMPHRLERVAQIQVGATPIRFVNDSKATNYEAGWVALN 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            LS          I + G   + G+            L    ++ V L G     L +AL
Sbjct: 355 ALS-------PPIILIAGGRAKQGDPGAWLR------LIRAKVARVLLMGESAPVLAEAL 401

Query: 419 PRSIHVHYSE 428
                +HY++
Sbjct: 402 QG---IHYTD 408


>gi|167837947|ref|ZP_02464806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis MSMB43]
          Length = 504

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 129/372 (34%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 139 VLAVAGTHGKTTTSSMLAWMLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 194

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 195 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             +   E + ++        +  FG                 E     V  + + + VV 
Sbjct: 255 GREDALERVLSRG---CWSDVERFGVDGGWQALPAEDGVPVDE--RFAVYWRSERVGVVG 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N L  +     +      A  AL+ F   +   +R     +    T+ D+
Sbjct: 310 WHVQGEHNRLNALAAIAAARHVGVPPAQAAAALATFRNVK---RRMEVRGSVDGVTVYDD 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P +++  I+ L         R +AVL    E    +    +  A++  SL +   
Sbjct: 367 -FAHHPTAIEMTIAGLRARIGCENTRILAVL----EPRSNTMKLGVMKAQLPASLADADL 421

Query: 404 VWLSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L+DAL P        + +  L   + +S   GD V+V  SN  G
Sbjct: 422 VFGYGAPTGRDALGWNLRDALAPLGDKARAFDDLHTLVKAVAASARPGDHVLVM-SNG-G 479

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 480 FGGVHQKLLDAL 491


>gi|42520363|ref|NP_966278.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|48428303|sp|P61683|MURC_WOLPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42410101|gb|AAS14212.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 498

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 117/348 (33%), Gaps = 58/348 (16%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI H     +   +V         ++ + +   ++    L++  + A +     +IA++G
Sbjct: 75  FIGHNANNISQAQIVVHSSAIEFDNVEL-IAAKNNNKTVLHRSDILAEIMKGKYVIAVSG 133

Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           S GKTTT  M+              +G   N       L       D  + E   S    
Sbjct: 134 SSGKTTTTAMIASIFDHSGIDATVTVGGILNSYKSNFKLG----GSDTFLIEADESDGTM 189

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     +   IAVIT+I   H+  +   + I +A ++        G+  L  D    + 
Sbjct: 190 LK-----IPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNN---AGSAVLP-DSVDIDY 240

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-----------LQGKSMEV 283
               S         +FG  +N   +    KQ +     +V             +GK  E+
Sbjct: 241 DAGNS--------ITFGF-ENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTEM 291

Query: 284 ----------------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                           + + IG H   N L  + +   L        K L  F       
Sbjct: 292 SSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVA--- 348

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +R+    +     LI++ Y  +P  + A ++    I+   +G+ I ++
Sbjct: 349 RRFSLIADIKGVKLIED-YAHHPNEIYATLTAARSIT---KGKVIGII 392


>gi|315058497|gb|ADT72826.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 432

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 130/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 86  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 143 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L     Y     KN   ++  +K     + 
Sbjct: 192 AYAEFLDTAKIRVINAEDEFLKNYKNESTKL-----YPSKDIKNCTMRIENFKPF---TS 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 244 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 296

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 297 ILYADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 354

Query: 392 LA---EVLSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A   E +    I  V+ +G   +   LK   P+++ V 
Sbjct: 355 FAKAFESIDELVILPVYAAGEEPIELDLKAVFPKALFVE 393


>gi|257056719|ref|YP_003134551.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
 gi|256586591|gb|ACU97724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
          Length = 458

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/393 (18%), Positives = 121/393 (30%), Gaps = 31/393 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTT 122
           G  LVV +     +   L+       +V+G +       + R      +A+TG+ GKTTT
Sbjct: 61  GTRLVVTSPGWRPTAPLLTAAASSGIEVIGDVELAWRIGQERPNPPTWLAVTGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M    L S        G+          L  +       + EL    L      +  +
Sbjct: 121 VGMAESMLRSAGVDAVACGNVGF-----AVLDAVLAGHSTLVVELSSFQL----HWSRSL 171

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  +V+  +A  HL    G+ E A+ K  I  G   +GT+  N  D +   L  +    
Sbjct: 172 APSASVVLNVAEDHLDWHGGLAEYAADKGTIHRG---SGTVVANLRDPWSRKLAEEHAPP 228

Query: 243 GIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMT 299
             + + ++    +  +  + +          +     + +  +      G H   N L  
Sbjct: 229 EARRVGFTLDTPRPGELGVVEDLLVDRAFVADPVHAAEELGTLADVRPGGPHNVANALAA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +V       +   + L  F    G  +        G    ID+S   NP    AAI  
Sbjct: 289 AALVRAYGVGPEAVAEGLRSFR--PGAHRAVEVGEFDG-VRYIDDSKATNPH---AAIGS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS---LYNISHVWLSGFHVLALKD 416
           L             + G   + G         +AE L    L        +        D
Sbjct: 343 LLAHPSVVW-----IAGGQLK-GASVDELVAAVAERLRGVVLLGADADVFAEALARHAPD 396

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L R I     E M       +     GD V++
Sbjct: 397 VLVRRIGSGDDEPMTAAVKAARELARPGDAVLL 429


>gi|218296771|ref|ZP_03497477.1| UDP-N-acetylmuramate/alanine ligase [Thermus aquaticus Y51MC23]
 gi|218242860|gb|EED09394.1| UDP-N-acetylmuramate/alanine ligase [Thermus aquaticus Y51MC23]
          Length = 446

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 127/385 (32%), Gaps = 52/385 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ + A L S+   I +TG+ GKTTT  ML   L                  + L
Sbjct: 82  LRVLRRMELLAHLLSQKPSIGVTGTHGKTTTTGMLASILLEAG----LDPWVLLGGELGL 137

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--------NFSGI 203
                       + E+  S       L   VR  +AV T +   H++            +
Sbjct: 138 LPGNARYGQGPRLAEVDESDP-----LFQGVRVSVAVATNLEADHIAPPGQRAPNYHESL 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +  A       L+  G   +   D   + L                  +  +      
Sbjct: 193 EALEEAMRGF---LKGAGVAVVPAFDERLKRLSQDLPRRL--------FGEGGELWAEGL 241

Query: 264 KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +     S   +  +G+ + E      G H  +N L           +V+  +K L  F  
Sbjct: 242 EPGPTGSRFLLVWEGRVLGEARLQVPGAHNVRNALAAALAALAFGVEVEAILKGLFRF-- 299

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G G+R++     G   ++D+ Y  +P  ++A +     +     GRRI VL     + 
Sbjct: 300 -PGVGRRFQKVGEVGGAWVVDD-YAHHPTEVRATLEAAGHL-----GRRIRVLFQPHRL- 351

Query: 383 ELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDAL---------PRSIHVHYSETM 430
             +Q+   +  E L+      +  V+ +G       +AL          R +   Y E  
Sbjct: 352 LRTQALWEEFVEALAQAQEVVVLPVYTAGERAQVSPEALSQRIAEGLKARGVAACYLEG- 410

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSC 455
           +    + +++   GD+ +   +   
Sbjct: 411 EEALAYARATAGPGDLWLALGAGDV 435


>gi|209963948|ref|YP_002296863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum centenum SW]
 gi|209957414|gb|ACI98050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           centenum SW]
          Length = 466

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 125/424 (29%), Gaps = 68/424 (16%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
               + A + +  IPV G  ++L          R R +AT + ITG+ GK+TT  +    
Sbjct: 81  APHPVAARVRAAGIPVIGDVELLR---------RARPEATYLGITGTNGKSTTTALTGHI 131

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L++  +     G+       P+         D  + E+    L     LT  +    A +
Sbjct: 132 LAAAGRRLQVGGNLG----TPVLTFEPLDAGDVYVLEMSSYQL----ELTPSLGFDAAAL 183

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIFLNYDDSFFELLKAKSHALGIK 245
             I P HL    G++   +AK   F              +  DD+    +     A G +
Sbjct: 184 LNITPDHLDRHGGMDGYVAAKRLAFRPAPSPRPALPVAVIGVDDAHCSAMADALEAEGGR 243

Query: 246 TIYSFGKSKNADFQLRK-----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +      +     +             ++   + L+G          G H  QN     
Sbjct: 244 RVVRISAERAVAGGVSAPDGVLVDDSEGRAVAVLDLRG-----CPSLPGRHNWQNACAAY 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +        +    A+  F    G   R +          +++S   N  +   A+   
Sbjct: 299 ALARAAGVAPEAIASAIRSF---AGLAHRQQAVATIDGVRFVNDSKATNADAAAKALGCY 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKD--A 417
             I     G+         E G     +F   +          H +L G          A
Sbjct: 356 DAIHWILGGK-------PKEGGLEGLDAFMPRV---------RHAFLIGAATEEFASWLA 399

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVV---KSS---------NSCGFYRLIN 462
                H         +    +S+L     G VV++    +S             F +L+ 
Sbjct: 400 ARGVPHTRCGTMETAVPTAFRSALAGGEPGAVVLLSPACASFDQYPNFEVRGDHFAKLVQ 459

Query: 463 LLLE 466
            L E
Sbjct: 460 ALTE 463


>gi|225677415|ref|ZP_03788382.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590559|gb|EEH11819.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 504

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 137/420 (32%), Gaps = 81/420 (19%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++  + A +     +IA++GS GKTTT  M+               + +  + V   L 
Sbjct: 113 LHRSDILAEIMKGKYVIAVSGSSGKTTTTAMIASIFDH--------SNIDATVIVGGILN 164

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               +   G  +  +    E       +   IAVIT+I   H+  +   + I +A ++  
Sbjct: 165 SYQSNSKLGKSDTFLIEADESDGTMLKIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFV 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                 G+  L  D    +   + S         +FG  +N   +    KQ +     +V
Sbjct: 225 NN---AGSAVL-SDSVDIDYDASNS--------ITFGF-ENGSIRASNIKQHANSIEFDV 271

Query: 275 QLQG----------KSMEVVHHG--------------------IGYHMAQNMLMTLGIVS 304
                         K +   H                      IG H   N L  + +  
Sbjct: 272 LNNWIPASATCMTKKQVSSHHPLSSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAI 331

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L        K L  F       +R+    N     LI++ Y  +P  + A ++    I+
Sbjct: 332 KLGISDADIKKGLLEFQGVA---RRFSLIANIKGVKLIED-YAHHPNEIYATLTAARSIT 387

Query: 365 PHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLSLYNISHVWL-----------SGFHV 411
              +G+ I ++    E    +  ++F  +   +  +    +V L            G  +
Sbjct: 388 ---KGKVIGII----EPLRFARIRNFFDEFIRIFMM--FDYVILTPVHPPEDKPIPGCGI 438

Query: 412 LALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNS--CGFYRLINLLLEE 467
             ++ AL  +   +     D L    FI  S   GD+V+   + S      +    L+ E
Sbjct: 439 DDIQKALISNGFNNTKIMNDALLISHFISDSTSPGDIVLFIGAGSNIAKLAKEAAKLIAE 498


>gi|213028581|ref|ZP_03343028.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 135

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + ++ F  +  N+DF        S  +   +Q    S++V+    G H   N L    + 
Sbjct: 4   RQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALS 63

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A +      L+      GR    + + NQ    ++D++YNAN  SM AA+ VLS++
Sbjct: 64  MAVGATLAAVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEM 120

Query: 364 SPHGEGRRIAVLGDMCEMG 382
                G R+ V+GDM E+G
Sbjct: 121 P----GYRVLVVGDMAELG 135


>gi|299136523|ref|ZP_07029706.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX8]
 gi|298601038|gb|EFI57193.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX8]
          Length = 492

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 117/364 (32%), Gaps = 42/364 (11%)

Query: 113 ITGSVGKTTTKEMLTIALSSIK--------KTYACIGSYNNHIGVPL-----TLARMPVD 159
           + G+ GKTTT  ML     +          +         + +   +     T  R+   
Sbjct: 110 VCGTHGKTTTTSMLAWIYETAGIREQGLGIREDGTARWTPSFLIGGVAENFGTSFRVQEG 169

Query: 160 VDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               I E               +   P  A++T +   H   ++ +  + +A   +   +
Sbjct: 170 TRPFILEGDEYDTAFFDKGPKFLHYFPDAAILTHVEFDHADIYTDLNAVKTAFKRMVNLI 229

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            + G +             AK+       +  +G  +++ +Q    K     +   +   
Sbjct: 230 PRRGRLLAFDGSENVTECAAKAFCA----VERYGFKEDSYWQAVDMKHEGVVTTWTLLRG 285

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G    ++     G H A N      + +     V+  ++AL+ F   +   +R       
Sbjct: 286 GVEFAKLRLPMAGEHNALNATAAAALAAGQGIPVEAIVEALATFKSVK---RRLEVRAEV 342

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ID+ +  +P +++  +  L     +   R  AVL         +  F  +L E L
Sbjct: 343 AGVTVIDD-FAHHPTAIRETLRALKS--AYAGRRLWAVLEPRSNTLRRNV-FERELVESL 398

Query: 397 SLYNISHVWLSGF------------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
           SL     V L+G                 + DAL  R +        D +   I   +  
Sbjct: 399 SL--ADEVVLAGVFKSDAIPVLERLEPEHVVDALNARQVPAVLCADADAIVAEITPRVRA 456

Query: 444 GDVV 447
           GDVV
Sbjct: 457 GDVV 460


>gi|312952735|ref|ZP_07771597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|310629251|gb|EFQ12534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|315153069|gb|EFT97085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0031]
          Length = 456

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTVEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +        +     D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFNYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|325478549|gb|EGC81661.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 116/343 (33%), Gaps = 44/343 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVR 183
           M+T  L+        +G+    I     L +M  + D   + EL    L +I+      +
Sbjct: 1   MVTHILNESGIKAISVGNIGEGI-----LWQMATNKDAVFVCELSSFQLHDIKN----YK 51

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA IT I+  H+      ++   +K  I +  ++   I +N++D   +  K+   A  
Sbjct: 52  PKIATITNISEDHIDWHGTFDDYIESKINISKNQDEDDYIIINHEDKILQDHKSSYKA-- 109

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGYHMAQNMLM 298
              IY F         +++     + +   + L+ + +E +        IG H   N++ 
Sbjct: 110 --KIYEFSSKNE----VKRGIFLKDST---IYLKDEKIEKLIDVDDLLIIGNHNYGNIMA 160

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +   D+    KAL  F+  E    R           + ++S   N  S   AI 
Sbjct: 161 ASLCAYLFGIDISDIKKALKTFNSIE---HRLEYVDTISGVKVYNDSKGTNVDSSVKAIE 217

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             +          I + G   +  + S        +         + + G     L +  
Sbjct: 218 SFND-------PIIIIAGGYNKHIDYSA-----FVKAFKKKG-KLMVIMGETSDILVNLC 264

Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
               +    ++ M             GDV+++  +S S   Y+
Sbjct: 265 KEEGVSYIKAKDMKEAVDISFDHASYGDVILLSPASASWDMYK 307


>gi|51892204|ref|YP_074895.1| UDP-N-acetylmuramyl tripeptide synthase [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855893|dbj|BAD40051.1| UDP-N-acetylmuramyl tripeptide synthase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 464

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 123/419 (29%), Gaps = 77/419 (18%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              D+L  L              ++AITG+ GKTTT +ML     +     A       +
Sbjct: 37  VAPDLLRTLAAQPREG-------VVAITGTNGKTTTAKMLASICEAAGWDVA-HNRAGAN 88

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPHIAVITTIAPAHLSNFS 201
           +   +T A +      G     +  L EI           VRP +AV+T      L  F 
Sbjct: 89  LISGVTTAFIQAADWKGRIHRSV-GLLEIDEATMPRACQEVRPKVAVVTNFFRDQLDRFG 147

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN------ 255
            +E      A     L   G   LN DD     L  +    G++ +Y +G   +      
Sbjct: 148 ELEHTVDLVARGLAHLAPGGRAVLNADDPNCARLGQR---RGVEPLY-YGLQVDAATAEA 203

Query: 256 ---------------------------ADFQL---------------RKWKQCSEQSWME 273
                                       D++                R W   +  S M 
Sbjct: 204 ASQAADARHCVQCGHPYEYRVLHYAHLGDYRCPQCGHRRPEPRVYVDRLWDVDARGSSMR 263

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +     + EV     G +   N +        L   +    + L     + GR +     
Sbjct: 264 LVTPEGACEVRLQIPGLYNVYNAIAAAAGAVALGLPLAAIRQGLETTTSQFGRMEMITIG 323

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q F  L+      NPA   + I  + Q         IA+     +  ++S  + +D  
Sbjct: 324 DRQVFMALVK-----NPAGFDSVIQTVMQAEARKNL-VIAINDQYADGTDVSWLWDVDFE 377

Query: 394 EVLS-LYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVV 447
            +      I+ V  +G     +   L  +      +   +  +         +  GD++
Sbjct: 378 RLAGHQSEINFVICTGVRAEDMAVRLKYAGMDPAKLSVEKDPERAVKQGLRYIQPGDLL 436


>gi|225387337|ref|ZP_03757101.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
 gi|225046549|gb|EEG56795.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
          Length = 448

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 130/413 (31%), Gaps = 53/413 (12%)

Query: 51  YDGHDFILHAVQK-GAGLVVVNTDMVASIGSLSI---PVFGVDDV----LGALNKLAVAA 102
            D  D    AV   GA  +  +           +   P   ++        A+   A   
Sbjct: 39  VDIADQKPAAVDADGARWITGDHYQNCLDDYDVVFKSPGIVLERPIESYRCAILSQAELF 98

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
               +  II ITG+ GK+TT  +L   L S  +    +G+    I     L  +  D   
Sbjct: 99  FHLFRDQIIGITGTKGKSTTTSLLYHVLKSAGQDCVVMGNIG--IPAFDHLEEIGPDTRI 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +FEL    L  +      V PHI V+  I   HL ++  +E+  +AK  IF   +    
Sbjct: 157 -VFELSCHQLEYM-----TVSPHIGVLINIHEEHLDHYGTMEKYVAAKHRIFRNQDSDDI 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +  N      + L           +   G +  +AD        C E     V    +  
Sbjct: 211 LVCNM-----QCLPEPGECPS--RLIRVGTNRPDADV---NVDNCGENGTF-VDYGCRRY 259

Query: 282 ---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E     +G H   ++ +   +  +L                 E    R +    +  
Sbjct: 260 RIPETEIRLLGQHNYFDIAVVYAVCGLLGIGEAA---FTEGLKSYEPLPHRLQYLGQRDG 316

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               D+S +   A+   A+  L+            ++G M    +     + +L + LS 
Sbjct: 317 VKYYDDSISTICATTIQALKTLTDAD-------TVLIGGMDRGID-----YGELIQFLSG 364

Query: 399 YNISHVWLSGFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDG 444
             I H+ L       + + + R          +  ++ ++      +S    G
Sbjct: 365 SPIPHIVLMEATGRRIYEEIGRDYPEFAGRDRLILADHLEEAVRAARSVTRPG 417


>gi|325922162|ref|ZP_08183951.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325547364|gb|EGD18429.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 452

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 126/373 (33%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSCLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG     ++  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDARLAEVLAMG---CWTPVERFGFDAALEWSARLI--AADGSVF 262

Query: 273 EVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  +  VH   +G H   N L  L  V  +  D  + + AL+ F   +   +R  
Sbjct: 263 AVLHRGVEIGQVHWPLVGRHNVLNGLAALAAVHAVGVDPASVMPALARFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
                   T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VLGQARDITVYDD-FAHHPTAIA---TTLQGLRAKVGAARVLV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL +   V           DA P    V    H +  +D L   +    
Sbjct: 374 QAL------APSLQDADAVVFL-HRPELAWDAAPIVAQVRGDAHVAHDVDALLHTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|315634759|ref|ZP_07890042.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
 gi|315476517|gb|EFU67266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
          Length = 457

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 140/410 (34%), Gaps = 32/410 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  I     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 67  MVIVGNAMKRGNPCIEYMLANNLPYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 126

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L + P    + + E            +  V   P 
Sbjct: 127 ILEQNGLQPGFLIGGIAGNFGISARLGKSP----YFVIEADEYDTAFFDKRSKFVHYNPR 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  I   H   F  ++ I      +   +   G I    ++   +   +       +
Sbjct: 183 TLIINNIGFDHADIFDDLKAIQRQFHHMIRTIPNNGRILSFANEESVQQTLSMGCWSECQ 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304
            +       + ++   + K   + +   V   G+ +  VH + +G H  +N LM +    
Sbjct: 243 YV-----GHDQEWYAERIKH--DCTEFAVFHNGEKVAEVHWNIVGEHNMRNGLMAIAAAH 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A  AL VF   +   +R     N    T+ D+ +  +P  ++A ++ L    
Sbjct: 296 HAGVSIENACAALGVFINAK---RRLEVKGNVQGVTVYDD-FAHHPTEIQATLTALRD-K 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                R +AVL    E    +     H  ++A  L   +   ++        + +     
Sbjct: 351 VGQNERILAVL----EPRSNTMKMGVHKEEIAPALEKADAVFLFQPDTIPWKVAEIAAHL 406

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEE 467
               + S+ +D     I +     D ++V    S       +L++ L ++
Sbjct: 407 TQPAYDSDNLDDFVHLIAAEAKPTDHILVMSNGSFGGIHQ-KLLDALQKK 455


>gi|86159812|ref|YP_466597.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776323|gb|ABC83160.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 474

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 115/357 (32%), Gaps = 35/357 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             + + G+ GKTTT  M+   L    +  +  +G           L   P      + E 
Sbjct: 112 HGVVVVGTHGKTTTSAMMGFVLHHAGRDPSFLVGGVTRDFDSNFRLGSGP----HFVVEG 167

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                         +  RP  A+ T+    H   +       SA     + L   G +  
Sbjct: 168 DEYDTAYFDKGPKFLHYRPRTAIFTSCELDHADIYRDEAHYESAFERFADLLPPDGFLAA 227

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283
                    + A++       + ++G     AD++ R      + +   +  +G ++ EV
Sbjct: 228 CAAYESVRRISARARC----RLETYGVDVPGADWEARGLSLGPDGARFTLVRKGAALAEV 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L      + L          L  FH   G  +R       G  T+ID
Sbjct: 284 HLPVGGAHNVENALGVAAAATALGLSPAEIAAGLGAFH---GVRRRQEVRGTAGGVTVID 340

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNIS 402
           + +  +P   +A    L+ +     G R+    +        ++ H  D ++  +    +
Sbjct: 341 D-FAHHP---RAVRKTLAAVRGSFPGARVLAAFE-PRSNTSRRNLHQADYSDPATWSGAA 395

Query: 403 HVWL--------SGFHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDV 446
            V++                 DA+ R++  H       + +D +   + +    GDV
Sbjct: 396 EVFVLRPAPTDRVPEAERLDVDAVVRALAAHGLPARVFDAVDPMVEAMAAGARPGDV 452


>gi|222524101|ref|YP_002568572.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus sp. Y-400-fl]
 gi|222447980|gb|ACM52246.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus sp. Y-400-fl]
          Length = 461

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 145/444 (32%), Gaps = 58/444 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A  +GA +V+    +  +   L          +  L++  +      +  +IA
Sbjct: 39  GHD---PAYVQGADVVLATAAIRGTHPELEAAAAA---GIPRLSRADLWRLWSEQRPVIA 92

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKTTT  +  +AL         +      +      A+        + E      
Sbjct: 93  IAGTHGKTTTTALTALALRGAGIRCGFL--IGADVPALGGSAQWGDPEAPLVIEA----- 145

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E   +   + P +A+IT +   H   +    E  +A A     +     + +  DD   
Sbjct: 146 DEYDRVFLALTPALAIITNVEWDHPDVYPTPSEYTAAFAAFSRQVRDPRRLLVCADDPGA 205

Query: 233 ELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKS 280
             L  +S A        +G  ++             D+        +     ++    + 
Sbjct: 206 LALAGQSEARL------YGIDEHIATDPVSCRLAPLDWTASGVTGTATGQQFDLWYYDRR 259

Query: 281 -------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    V     G H  +N    L   ++  AD+ TA+ AL+ +    G  +R+   
Sbjct: 260 SFGRRLAATVTLAIPGEHNVRNATAALAAAALWGADLRTAVTALAEY---RGSSRRFEWR 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----- 388
            + G  T+ID+ Y  +P  ++A +  L+    + + R I  L         ++S      
Sbjct: 317 GDVGGITVIDD-YAHHPTEVQATL--LAARQRYPDRRLIVYL--QPHTFSRTRSLWDQWP 371

Query: 389 ----HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
                  +  V  +Y             +L D L    I   Y+         + +    
Sbjct: 372 AAFREAAVVLVGDIYPAREQGDPVALAQSLVDHLIAHGIPARYAGPSALAPSALLAVAQS 431

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
           GDVV+   +      ++    LE+
Sbjct: 432 GDVVLTLGAGDS--DQVAAAFLEQ 453


>gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
 gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 519

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 139/432 (32%), Gaps = 46/432 (10%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++A    +  H I        + I+ D+R +         KG  +   +++    +
Sbjct: 18  LREIIRADRWTLDAHDIEGA-DTAFSAITYDTRDVREGTL-LCCKG-RFKA-EYLHDIDE 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +G    V +TD  A  G+   P   V+D   A++ L+     R + + T++ ITG+ GKT
Sbjct: 74  RGLAAYVADTDFSAETGA---PGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGTKGKT 130

Query: 121 TTKEMLTIALSS----------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           TT       L++                   TY               + R   D     
Sbjct: 131 TTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKY 190

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGT 222
             + +S         + +   +A    I+P H+S       E+    K +I      +  
Sbjct: 191 LVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVCN---SRA 247

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSF------GKSKNADFQLRKWKQCSEQSWMEVQL 276
           + L       +LL+  +   G+  + +F        + +    +      +E S   +  
Sbjct: 248 LVLGAASDHADLLRQDAADAGV-PVTTFELLDGQSPAGSDAAYVTASPANAEHSAYRIAA 306

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G  + E      G     N    L I      D+     A     P    G+  +    
Sbjct: 307 GGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 366

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           Q     I + Y  N AS+ A +  + +       R   V G     G  +     ++ E 
Sbjct: 367 QSNTLAIVD-YAHNYASVTALLDFVDERFGSQHPRITLVTGS---AGNKAYDRRKEIVEA 422

Query: 396 LSLYNISHVWLS 407
                 S ++ +
Sbjct: 423 AQHRIDSFIFTA 434


>gi|256960177|ref|ZP_05564348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|293382542|ref|ZP_06628476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|293387857|ref|ZP_06632396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|312906855|ref|ZP_07765852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|312978890|ref|ZP_07790616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
 gi|256950673|gb|EEU67305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|291080090|gb|EFE17454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|291082704|gb|EFE19667.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|310627109|gb|EFQ10392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|311288327|gb|EFQ66883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
          Length = 456

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 97/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L  F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFEN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|124266216|ref|YP_001020220.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258991|gb|ABM93985.1| cyanphycin synthetase [Methylibium petroleiphilum PM1]
          Length = 855

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 135/402 (33%), Gaps = 56/402 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V  A+ +         +  ++A+TG+ GKTTT  ++    ++         +   ++ 
Sbjct: 450 RNVGEAMIQHLFGHGDDGRIPVVAVTGTNGKTTTARLIAHLFATSGLRVGMTNTDGVYVE 509

Query: 149 VPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-A 195
                +             M  DVD  +FE   +  G +R      R  +AV+T I    
Sbjct: 510 GRQIDSGDCSGPKSARNVLMHPDVDAAVFE--TARGGVLREGLGFDRCQVAVVTNIGSGD 567

Query: 196 HLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           HL     + +E++A  K  I + + ++G   LN  D     +           +  F   
Sbjct: 568 HLGLNYITTVEDLAVLKRVIVQNVAQSGYAVLNATDVNVAAMAGTCPG----DVIFFAAD 623

Query: 254 KNADFQLRKWKQCSEQSWME----VQLQG--------KSMEVVHHGIGYHMAQNMLMTLG 301
           ++         Q     ++E    V  QG        + + +   G      +N +  + 
Sbjct: 624 RHHPVMATHRAQGKRTVYVEGDALVAAQGAWREKLLLRDIPLTRGGTIGFQVENAMAAVA 683

Query: 302 IVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +  D DT  + L+ F +  +    R+     +G   + D  Y  NP +M+A ++ +
Sbjct: 684 AAWGVGLDWDTVRRGLASFVNDADNAPGRFNVMDFKGATVIAD--YGHNPDAMRALVAAV 741

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFH 410
             +      RR  V+    +  +        +           V L           G  
Sbjct: 742 DAMPAT---RRAVVISGAGDRRDDDIREQTQIL----GAAFDDVLLYQDAAQRGRADGEV 794

Query: 411 VLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L++ L  +    + E + G           L  G++ +V
Sbjct: 795 IALLREGLRGATRTRHVEEIHGEFIAIDTALDRLKPGELCLV 836


>gi|295696515|ref|YP_003589753.1| domain of unknown function DUF1727 [Bacillus tusciae DSM 2912]
 gi|295412117|gb|ADG06609.1| domain of unknown function DUF1727 [Bacillus tusciae DSM 2912]
          Length = 506

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 115/382 (30%), Gaps = 73/382 (19%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------IGSYNNHIGV 149
                A  R    I+ ITG+ GKTTT  ++   L                +      +  
Sbjct: 42  DFLAVAGARFAGKIVLITGTNGKTTTSNLVGGWLRDNGWKVVSNRLGANLVQGIATAVVE 101

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L L R   + +  +FE+       +  +   + P + V+T      +  +  ++ +   
Sbjct: 102 QLPLTR--REREAAVFEV---DEATVEKVVEDLAPGVVVVTNFFRDQMDRYGELDRVVDL 156

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-------------GIKTI--------- 247
            A     + K+    +N DD        +  A+             G + +         
Sbjct: 157 VAAALARVPKSCVCLINGDDPLAYRAAPEGRAVRFYGLDAPQWLEPGSREVRDGKFCGFC 216

Query: 248 --------YSFG------------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                   + +G            +    D   R+ +        EV      +      
Sbjct: 217 GHPLGYAGFFYGQLGVWRCPGCGRERPRPDPAARRIRIAGTGLAFEVD----GVPARLDS 272

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G +   N+L   G V  L    +    A        GR +R+R         L+     
Sbjct: 273 PGLYNVYNVLAAYGAVRALGLSAEQVRAATGRIRTGLGRLERFRVEGRPVVLALVK---- 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGD-MCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            NPA +   + V+ +     +   + VL D   +  ++S  +  DL E L       VW 
Sbjct: 329 -NPAGLNEQLKVVERTPDVTD--VVLVLNDLYADGTDVSWIWDADL-ERLKDKGFERVWC 384

Query: 407 SGFHVLALKDALPRSIHVHYSE 428
           +G     +       I V Y+E
Sbjct: 385 AGTRAEDMA------IRVRYAE 400


>gi|191638274|ref|YP_001987440.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           casei BL23]
 gi|226711915|sp|B3WDY1|MURD_LACCB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|190712576|emb|CAQ66582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus casei
           BL23]
 gi|327382306|gb|AEA53782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei LC2W]
 gi|327385501|gb|AEA56975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei BD-II]
          Length = 459

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 32/326 (9%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + L+  +  +A   + N  I V     ++  D D  + EL    L  I+ L     P
Sbjct: 129 LIGLMLNQQRPHHA-FDAGNIGIPVSQVAQKVGKD-DTIVAELSSFQLCGIKTL----HP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL          +AK  I           +N+D      L  +S A   
Sbjct: 183 HIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHELAKQSKA--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  F +      + +         W+                G H  +N L  +  V 
Sbjct: 240 -QIVPFSRKNAEGARAQLID-----GWLTFDGDRIMKASEMQIPGLHNIENALAAIAAVK 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D   + L  F   +    R +         + ++S   N  +   A++   Q  
Sbjct: 294 LEGVGDDAIREVLRTFSGVK---HRIQYLETIDGRRVYNDSKATNVEAATVALNAFDQ-- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
                  I  L    + G       +D    L   ++  + + G     +        + 
Sbjct: 349 ------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTAPLMAKIGKDAGVP 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V  +E +             GDV+++
Sbjct: 398 VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|146299568|ref|YP_001194159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
 gi|146153986|gb|ABQ04840.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
          Length = 443

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 123/353 (34%), Gaps = 34/353 (9%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A+  ++A  I ITGS GKTTT  +    L S        G+        +   +     
Sbjct: 94  FAKPFTEALTIGITGSNGKTTTTMLTHHLLKSAGLNVGLGGNIGKSFAWQVAENK----Y 149

Query: 161 DFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
           D  + EL    L G I +     RP IA+IT I+P HL  +    E   ++K  I     
Sbjct: 150 DAYVLELSSFQLDGIIDY-----RPDIAIITNISPDHLDRYEYKYENYINSKFRITMNQT 204

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           ++  +  + DD         +       +  F  +K  D         + +  +++  + 
Sbjct: 205 ESDYLIYDADDEASTEWLKNNKTKA--KLIPFSLTKTFD---EGASINNNKMEIKINQEE 259

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +ME  H  + G H  +N +    +  ++     T  ++LS F   E    R    L   
Sbjct: 260 FTMETEHIALEGKHNMKNAMAASSVAKLMQIRNATIRESLSNFQGVE---HRLEKVLKIQ 316

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S   N  +   A+  ++  +    G            G    + + +L  ++ 
Sbjct: 317 NVQYINDSKATNVNATFFALDSMNVPTVWIVG------------GVDKGNDYNELMSLVR 364

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +   G     + DA    + +      M+      Q     GD V++
Sbjct: 365 E-KVKAIICLGIDNRKIIDAFGAVVDIMVEVNNMNDAVKTAQRLTEKGDAVLL 416


>gi|254523010|ref|ZP_05135065.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Stenotrophomonas sp. SKA14]
 gi|219720601|gb|EED39126.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Stenotrophomonas sp. SKA14]
          Length = 454

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 125/361 (34%), Gaps = 36/361 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
                +A+ G+ GKTTT  +LT  L S  ++    IG      GV   L +        +
Sbjct: 102 PGRDTLAVAGTHGKTTTTTILTWLLESAGRSPGFLIGGVAEDFGVSARLGQG----REFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP +A++  +   H   F  +  I      +   +   G 
Sbjct: 158 VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPARGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           + +N +D +   + A         +  FG   + ++        ++ S   V  +G+++ 
Sbjct: 218 LIVNGEDKYLAEVLAMG---CWTPVERFGFDPSLEWHAELL--AADGSAFRVHHRGQALG 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G H   N L  L     +       I AL+ F   +   +R     +    T+
Sbjct: 273 DVRWSLLGRHNVLNGLAALAAAHAVGVAPADVIPALARFRSVK---RRMEVIGSHDGITV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFHIDLAEV 395
            D+ +  +P ++    + L  +       RI V   M        +G  +Q+    LA  
Sbjct: 330 YDD-FAHHPTAIA---TTLEGLRAKVGDARIVV--AMEPRSNSMRLGAHAQALAPSLA-- 381

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                   V+L    +     A+  ++    H     D L   +QS    GD VV   SN
Sbjct: 382 ---LADEVVFLHRPELAWDAAAVIAAVRGQAHAVPDTDALLAQLQSRARSGDHVVFM-SN 437

Query: 454 S 454
            
Sbjct: 438 G 438


>gi|20094483|ref|NP_614330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
 gi|19887585|gb|AAM02260.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
          Length = 470

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 130/379 (34%), Gaps = 51/379 (13%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+DV G L  L            I ITG+ GKTTT   +   L +         S + 
Sbjct: 95  ITVEDVAGLLGDL-------FPVPAIGITGTNGKTTTTWAVAHLLEACGYEVWRCSSLDR 147

Query: 146 HIGVPL----TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200
           H+ +       +       D  + EL     G IR L   +   + V+T ++P HL  F 
Sbjct: 148 HLVIEAIVDGVVTGEIEGYDVAVVELP---HGTIR-LAAGIELDVGVLTNVSPEHLDEFG 203

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E     K  I E  E    +   YD          +       ++   +  +AD+  
Sbjct: 204 GSFERYVRRKLTITEMSE---VLVAGYDCEELRKRLNDA-------VWYSVRDPDADYYG 253

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           R+     E   + V+    S+E   H IGY+  +N    +       AD +   + L+ F
Sbjct: 254 RR-----ENGRLVVKGPDASVEADFHLIGYY-VENCTGAVAACLEFGADPEGVAEGLATF 307

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               GR +        G    ID     NP  +KA++    +++    GR +  + +   
Sbjct: 308 EGVPGRMEL--LGEFSGRVAYIDA--AHNPDGLKASLPPFRELADERGGRLLVSVDNPDT 363

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG-----------FHVLALKDALPRSIHVHYSET 429
           + E  +    +   ++  Y    V  SG                +K A          ++
Sbjct: 364 VTERDK---FEFGRIVGEY-ADFVAASGYNETLERLDRSAAEEVVKGAESAGCEGVAVDS 419

Query: 430 MDGLFLFIQSSLVDGDVVV 448
           +      + +   +GDV++
Sbjct: 420 VREAAEEVAARSEEGDVLL 438


>gi|315029682|gb|EFT41614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4000]
          Length = 456

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTVEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|254454230|ref|ZP_05067667.1| cyanophycin synthetase [Octadecabacter antarcticus 238]
 gi|198268636|gb|EDY92906.1| cyanophycin synthetase [Octadecabacter antarcticus 238]
          Length = 957

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 111/313 (35%), Gaps = 35/313 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV GA+ ++   A   S+  I +ITG+ GKTT   M+               +   +I 
Sbjct: 476 RDVAGAVMEMLFPAGTPSRVPIASITGTNGKTTVSRMVAHIHKLSGNMVGLATTDGVYID 535

Query: 149 VPLTL---------ARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             LT+         A+M      VD  I E   +  G +R      R  +  +  I   H
Sbjct: 536 GNLTVKGDLTGPRAAQMILRDPTVDAAILE--TARGGLLRSGLGYERCDVGAVLNIQADH 593

Query: 197 LSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY------ 248
           L       IE++A  K  + E    T T  LN DD     +   + A  I  +       
Sbjct: 594 LGLKGVETIEDLARVKRIVIE--VATDTAVLNADDELCLKMAEHTKADHICYVTMNAHHP 651

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIG-------YHMAQNMLMTL 300
              +      +    +Q      + +     +++ +  H I         H  QN +   
Sbjct: 652 LVREHVRIGGRAVVLEQGMNGHMITIYEHSSNIQLMWTHLIPATIDGKAMHNVQNAMFAA 711

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +   ++   + L  F     +         +  F +I + Y  NPA+++A   + 
Sbjct: 712 AICYSMGKSLEDIRQGLRTFATSYFQAPGRLNIFEEHPFKVILD-YGHNPAAIEAMTKLC 770

Query: 361 SQISPHGEGRRIA 373
           +Q+ P  +GR+I 
Sbjct: 771 TQLEP--KGRKII 781


>gi|158834106|gb|ABW81858.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 19/263 (7%)

Query: 138 ACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A   +  + I V  TL   +    +F   E+     G ++     +     V T ++  H
Sbjct: 5   ATENTTGSAIDVQKTLNHFVMQGANFAAMEVSSH--GLVQHRVTALPFAAVVFTNLSRDH 62

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    +AK ++F          +N DD          H L      S      A
Sbjct: 63  LDYHGDMARYKAAKWQLFS-THHAKEKIINADDQVGRRWL---HQLPHAVAVSMEGKIPA 118

Query: 257 DFQLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           D++ R          ++   +          +V   +G     N+L+ L  +  L   + 
Sbjct: 119 DWKGRWLETKNINYHAQGITLRFDSSWGEGRLVSRLLGAFNVSNLLIALATLLALDYPLK 178

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  +S      G   R          T+I + Y   P +++ A   L+    H +G+ 
Sbjct: 179 KLVATVSQLQAVCG---RMEVFNALDRPTVIVD-YAHTPDALEKA---LAAARLHCKGQL 231

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
             V G   +  +  ++    +AE
Sbjct: 232 WCVFGCGGDRDKGKRALMGGIAE 254


>gi|257421242|ref|ZP_05598232.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
 gi|257163066|gb|EEU93026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
          Length = 456

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTVEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|296122915|ref|YP_003630693.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015255|gb|ADG68494.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 896

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 128/383 (33%), Gaps = 49/383 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-------------PLTL 153
           +  I+++TG+ GKTTT  ++        K      +   +I                 T+
Sbjct: 488 RVPIVSVTGTNGKTTTTRLMAHIFRQQGKCVGMTCTDGVYIDDRRIDTGDCSGPRSARTV 547

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFS--GIEEIASAK 210
              P  V+  + E   +  G +R      R H+A++T I    HL        E++   K
Sbjct: 548 LSNPT-VEAAVLE--TARGGILREGLGFDRCHVAIVTNIGEGDHLGMAGIETAEQLGRVK 604

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS---------FGKSKNADFQLR 261
             I E +   G   LN +D     +        I    S           K   A +  +
Sbjct: 605 RVIVENVSPDGHAVLNAEDPITLAMADYCPGKVILFARSGDHPAVKSHLAKGGKAVYTQQ 664

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            W   +E SW        ++ +   G+      N + ++     L    +T   AL  F 
Sbjct: 665 NWLIAAEGSWSARVASLNNVPLTFSGLIGFQVDNTMASMAAAWALGIPFETIRSALETFS 724

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               +       L     TLI + Y  N +++ A +  ++Q+      RRI         
Sbjct: 725 SDIRKAPARFNVLEAAGATLIID-YGHNSSAIVALLDAINQLP--HGRRRIV----YTAA 777

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYS-ETM 430
           G+      +  A++++      + +           G  +  ++  L +   +    ET 
Sbjct: 778 GDRRDEDIVRQAQLIA-SGFDEIVIYEDQCTRGRADGEVIRLMRQGLSQGGRLSSILETR 836

Query: 431 DGL--FLFIQSSLVDGDVVVVKS 451
             +         +  GD+V++++
Sbjct: 837 GEMVAIEMCLQRMEPGDLVLIQA 859


>gi|325929133|ref|ZP_08190278.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325540485|gb|EGD12082.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 339

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 118/351 (33%), Gaps = 40/351 (11%)

Query: 118 GKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  +L+  L +  +     IG      GV   L +        + E          
Sbjct: 1   GKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLGQG----REFVVEADEYDTAFFD 56

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V  RP +A++  +   H   F  +  I      +   +   G + +N +D+    
Sbjct: 57  KRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPARGRLIVNGEDAHLAE 116

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           + A         +  FG   + D+  R     ++ S   V  +G  + +V    +G H  
Sbjct: 117 VLAMG---CWTPVERFGFDASLDWSARLI--AADGSAFAVLHRGVEIGQVQWPLVGRHNV 171

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  V  +  D  T + AL+ F   +   +R     +    T+ D+ +  +P ++
Sbjct: 172 LNGLAALAAVQAVGVDPATVMPALAQFQSVK---RRLEVIGSARAITVYDD-FAHHPTAI 227

Query: 354 KAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               + L  +       R+ V   M        +G  +Q+         SL++   V   
Sbjct: 228 A---TTLQGLRAKVGAARVVV--AMEPRSNSMRLGAHAQAL------APSLHDADAVVFL 276

Query: 408 GFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                   DA P            + +D L   +      GD VV   SN 
Sbjct: 277 -HRPELAWDAAPIIAQVRGEARVVQDVDALLRALGDIARPGDHVVFM-SNG 325


>gi|189499820|ref|YP_001959290.1| Mur ligase middle domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495261|gb|ACE03809.1| Mur ligase middle domain protein [Chlorobium phaeobacteroides BS1]
          Length = 476

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 95/287 (33%), Gaps = 33/287 (11%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IAVI  I   H   FS +++I  +  +    +   G + +N  D+    + +++   
Sbjct: 182 RPDIAVINNIEFDHADIFSSLDDIVKSFRQFIALIPSNGLLIVNGHDTIASEISSQAFC- 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
               +  FG S+  ++ +        ++  ++  +G     +     G H   N +  + 
Sbjct: 241 ---PVERFGMSEAFEWSVSDIDVSETETSFQLAHKGNIAGTIRIDQFGSHTILNTVAAVA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             S          + +  F   +   +R            + + +  +P ++ A +S L 
Sbjct: 298 AASHAGIPFPVIAEGVRSFKRPK---RRMEIVGEFDNGITLIDDFAHHPTAISATLSSLR 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------ 409
           Q  P    RRI    +          F  DL    S  +I    + G             
Sbjct: 355 QRFPE---RRILACFEPRSNTSTRNIFQKDLENSFSDADI---VIIGKVHRPERYAEHER 408

Query: 410 -HVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVDGDVVVV 449
                L  +L  S    +    D       +  FI  ++   D++++
Sbjct: 409 LDTQKLCSSLAGSGKKVFQSGKDPAGYPEDIVRFIHENIRPDDLIIL 455


>gi|229546840|ref|ZP_04435565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|229548934|ref|ZP_04437659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|255971447|ref|ZP_05422033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256617917|ref|ZP_05474763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256761751|ref|ZP_05502331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256852646|ref|ZP_05558017.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256962581|ref|ZP_05566752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|257089402|ref|ZP_05583763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|307272007|ref|ZP_07553273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|307290045|ref|ZP_07569969.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|312904555|ref|ZP_07763713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|229305955|gb|EEN71951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|229308005|gb|EEN73992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|255962465|gb|EET94941.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256597444|gb|EEU16620.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256683002|gb|EEU22697.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256711991|gb|EEU27028.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256953077|gb|EEU69709.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|256998214|gb|EEU84734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|306498887|gb|EFM68381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|306511302|gb|EFM80306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|310632068|gb|EFQ15351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|315156842|gb|EFU00859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0043]
 gi|315157628|gb|EFU01645.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0312]
 gi|315577391|gb|EFU89582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0630]
          Length = 456

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTVEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L+ F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|71281643|ref|YP_268601.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
 gi|71147383|gb|AAZ27856.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
          Length = 939

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 105/320 (32%), Gaps = 40/320 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM---------- 156
           +  I  ITG+ GKTTT  ML   L S         +   ++   L++             
Sbjct: 495 RIPIAGITGTNGKTTTSRMLAHILKSAGHVVGMTSTDGVYVDGQLSVKGDMTGPVSSQIV 554

Query: 157 --PVDVDFGIFELGMSHLGEIRFLTHLV-RPHIAVITTIAPAHLS--NFSGIEEIASAKA 211
                VD  + E   +  G I           +A    +   HL       ++++A  K 
Sbjct: 555 LRDPSVDIAVLE---TARGGIARSGLGYNECDVAACINVQEDHLGLRGIDTLDQLAEVKR 611

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY------SFGKSKNADFQLRKWKQ 265
            + E      ++ LN DD     +   + A  +  +          +   A  +    ++
Sbjct: 612 IVVE--VAKDSVVLNADDPQCLKMAEHTKAKHLCYVTMNTGHSLVREHIRAGGRAVVLEK 669

Query: 266 CSEQSWMEVQLQGKSME-VVHHGIGY-------HMAQNMLMTLGIVSILTADVDTAIKAL 317
                 + +   G  +  +  H I         H  QN +    +   L   ++   + L
Sbjct: 670 GINGDMITIFDNGTHIPLLWTHLIPATLEGKALHNVQNAMFAAALAYCLDKPLEAIQQGL 729

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F     +        ++  F +I + Y  N   ++    + S++    +G+RI VL  
Sbjct: 730 RTFTTTFYQAPGRMNVFDEHHFRVILD-YAHNADGVRCMSELASKL--EVKGKRITVLAG 786

Query: 378 MCEMGELSQSFHIDLAEVLS 397
               G+      +++A+  +
Sbjct: 787 P---GDRRDEDIVNIAKAAA 803


>gi|307944896|ref|ZP_07660233.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
 gi|307771820|gb|EFO31044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
          Length = 466

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 120/377 (31%), Gaps = 48/377 (12%)

Query: 81  LSIPVFGVDDVLGA----LNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSS 132
             +P + VD    A    +  + +  R R K    A ++AITG+ GK+TT  ++   L S
Sbjct: 79  HPLPHWTVDKARDAGIEVIGDVELFFRERRKVCPEAPVVAITGTNGKSTTTSLIAHLLKS 138

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                   G+    IGVPL            + E     +     L   + P I +   +
Sbjct: 139 AGLDTQMGGN----IGVPLLELEPFHAERHFVIECSSYQID----LAPSLDPTIGIHMNL 190

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +P HL     +E  A+ K  +  G        +  DDS    +  +   L  K +     
Sbjct: 191 SPDHLDRHGSLENYAAIKERLVAG---AKVAIVGVDDSLSTQIADRLE-LARKPVCRISG 246

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----GYHMAQNMLMTLGIVSILTA 308
           +    F+L       +    E     +    +  GI    G H  QN       + +L  
Sbjct: 247 A----FELPDGVYAHQGKLFEAYDGAQRKVGILDGIDSLRGDHNGQNAAAAFAALRVLKV 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D    +K ++ F    G   R       G    +++S   N  +   A+S   +I     
Sbjct: 303 DEAEILKGMADF---PGLHHRMEVVGRSGRLLFVNDSKATNADAAARALSSFDRIYWIAG 359

Query: 369 GRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           G          E G  S   +   +A           +L G         L   +    S
Sbjct: 360 GL-------PKEGGIASLDLYWPRVARA---------YLIGEAAEEFGKTLKGHVDYTLS 403

Query: 428 ETMDGLFLFIQSSLVDG 444
            T++   +   S     
Sbjct: 404 GTLEKAVVQATSDARAD 420


>gi|296285056|ref|ZP_06863054.1| hypothetical protein CbatJ_15620 [Citromicrobium bathyomarinum
           JL354]
          Length = 476

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 138/406 (33%), Gaps = 46/406 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      V     L +P     D+  AL   A           +A+ G+ GK+T   M
Sbjct: 85  AAVEDTVPEVVRAKELGLPRLTRADLNAALFNAAETG--------VAVAGTSGKSTVTGM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L    K    I +    +   ++  R       G  +L +S + E        +P 
Sbjct: 137 LGWILHHAGKNP-TIMN-GAVMKNFVSDDRPFASAVVGDADLYVSEVDESDGSIAQYKPA 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++  ++  H      ++E+     +    LE +    +N DD     L A ++A    
Sbjct: 195 VGILLNVSLDH----KSMDELRQLFGDF---LEASDRSVVNADDEEAFRLVAHANAP--- 244

Query: 246 TIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMTL 300
              +FG +   A   + +       +     +  K  +  H    +  G H   N L  +
Sbjct: 245 --LTFGVTNGCAALGIVEGSIAEGPTRQAAMVHDKRDDSQHALTLNLPGRHNLSNALAAI 302

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +     V  A+ AL+ F   +G  +R+           + + +  NP    A +  L
Sbjct: 303 AGANAAGVSVADAVAALAEF---KGLARRFDIVGTSSSGVTVIDDFGHNPEKAAATLRTL 359

Query: 361 SQISPHGEGRRIAVL-----GDMCEM-GELSQSFHIDLAEVLSLYNISHVWLSG-----F 409
                  EGR +A       G + +M GEL+++F  +L           V+  G      
Sbjct: 360 KA----HEGRVLAFFQPHGYGPLKQMGGELAETFARELGPEDISLLCDPVYFGGTVDRSE 415

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               + D + +      +  T +G   ++ ++   GD + +  +  
Sbjct: 416 GSERIVDLIAKHGGKAIHINTREGCGDWLVANARPGDRIAIMGARD 461


>gi|114777864|ref|ZP_01452795.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551855|gb|EAU54395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
          Length = 455

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 115/331 (34%), Gaps = 15/331 (4%)

Query: 64  GAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L   +  +V+   S   P +  V +    +              IIA+TG+ GKTTT
Sbjct: 61  GARLQQFDRVIVSPGISWRHPALVQVREAGIPVYGDLQLFGEHFHGDIIAVTGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +++  L ++       G+    +   +    +P  V   + EL    L         +
Sbjct: 121 VSLISTMLDTLPGGIEAGGNIGKPMLELIADGDVPERV---VLELSSFQL----ERAEPI 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  AV+  + P H      ++   +AK  +F    +     L  D  + +L        
Sbjct: 174 HPRWAVLLNVQPDHADMHVDMQAYRAAKLRLFARQGEGDKATLPGDAEWDDLAAELRGRG 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  G +++ D  ++  +Q + E  W                 G H   N+ +   
Sbjct: 234 AYVRRFGVGSAESLDCGVQMTEQGAWELFWHHFDTVYTIDASQLQTRGRHQHLNLAVAGQ 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +          ++L+ F    G   R +           ++S   NP + +AA+    
Sbjct: 294 AAADFGLSPAVIRQSLTSF---RGLQHRLQSLGEVQGRQWFNDSKATNPDAARAALESFE 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           Q+     G R  +  D+ E+ + + + H+ L
Sbjct: 351 QVIWVCGGLRKGL--DVSEL-KDAVAAHVAL 378


>gi|315504854|ref|YP_004083741.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Micromonospora sp.
           L5]
 gi|315411473|gb|ADU09590.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Micromonospora sp.
           L5]
          Length = 448

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 130/387 (33%), Gaps = 40/387 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VVV +  V +     + +      +   + L +A         + +TGS GK+TT  
Sbjct: 71  AADVVVRSPGVPNTHPWMVELRRRSVPVTQGSALWMADHAD---RTVGVTGSKGKSTTSS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  L+++ +     G+    +           + +  + EL      ++        P
Sbjct: 128 LISHLLTAMDRPNVFGGNIGVPLLD-------LPEAELYVLELSSYQCSDL-----TDSP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T + P HL    G  E    K  +         + +N  D         +  LG 
Sbjct: 176 RVAVVTALFPEHLDAHGGEREYYRDKLNLIAHGPH--AVVVNGADPRL------AAELGD 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +     G                + + W  ++        V   +G H   N+ + L ++
Sbjct: 228 RAAVRAGSPDT-----THVATGPDGTQWFHLRDTPLFPRAVLPLVGRHNEGNLCVALAVL 282

Query: 304 SILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             L  DV     +L+V     +G   R     +    T +D++   +P +   AI     
Sbjct: 283 DALGVDVVARKDSLAVAVAEFQGLAHRLTEIADPSGLTFVDDTLATSPYAAMHAIDA--- 339

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                EGR + V+    + G         LA       +  V  SG  ++     LP S+
Sbjct: 340 ----YEGRPLTVIVGGADRGLDYSPLRAHLAG--REITVIGVPDSGPRIVEALSGLP-SV 392

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ +       +     G VV++
Sbjct: 393 RTELADDLVAAVGLSRKLTPAGGVVLL 419


>gi|215403429|ref|ZP_03415610.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
          Length = 362

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 111/333 (33%), Gaps = 34/333 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GHD      +  GA  VV            +       IPV     VL  L         
Sbjct: 47  GHDASSLDLLPGGATAVVTTHAAIPKTNPELVEARRRGIPVVLRPAVLAKLMA------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T + +TG+ GKTTT  ML +AL             +    V   L     +   G 
Sbjct: 100 --GRTTLMVTGTHGKTTTTSMLIVALQHCG--------LDPSFAVGGELGEAGTNAHHGS 149

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            +  ++   E         PH+AVIT I   HL  +  +E   +      E +   G + 
Sbjct: 150 GDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  DD     L  ++  LGI+ +  +G    +     L  W+Q    +   ++L  +   
Sbjct: 210 VCTDDPGGAALAQRATELGIR-VLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELAT 268

Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G HMA N L  L     + A  D  +  L+ F     R +        
Sbjct: 269 AQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVG 328

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + + Y  +P  + A ++    +   G+G
Sbjct: 329 KASVRVFDDYAHHPTEISATLAAARMVLEQGDG 361


>gi|86150478|ref|ZP_01068703.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839073|gb|EAQ56337.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 431

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L           KN   ++  +K     + 
Sbjct: 191 AYAEFLDTAKIRVINAEDEFLKNYKNESTKLYPNKDI-----KNCTMRIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFVE 392


>gi|194477145|ref|YP_002049324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
 gi|171192152|gb|ACB43114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
          Length = 457

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 128/355 (36%), Gaps = 48/355 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTL 153
           + ++ +A  +  K   IAITG+ GKTT   ++   LS         G+       + L+L
Sbjct: 96  MGEMVLAWEVLGKIPWIAITGTNGKTTVTHLVNHLLSYAGLEAPMCGNIGFSATDLALSL 155

Query: 154 ARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           ++  +++ D+ I EL    +        ++RP+I + TT+ P HL   + +    S K+ 
Sbjct: 156 SKKKINIPDWLIVELSSYQI----ESAPVIRPNIVLWTTLTPDHLERHNTLFNYRSIKSS 211

Query: 213 IFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKN-------ADFQLRKWK 264
           + E    +    LN DD        +  +A  + T   F  SKN       AD  +    
Sbjct: 212 LVEN---SNYQILNADDLDLSSSAGSWPNANWVSTDLQFALSKNIKPVLWIADGYVTN-- 266

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +                 + +G H  QN+LM   +   ++       +A   F    
Sbjct: 267 --QDGPIFSAD--------GFNLVGVHNQQNLLMAAAVGLKISLSPKIISEA---FRCFP 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R     +       ++S   N  + + AI  +       EG  I + G   + GE 
Sbjct: 314 GVPHRLDLIRSYKGIHFYNDSKATNYDAAEVAIKAV-------EGPIIVLAGGQTKKGEA 366

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLF 436
           +      ++++        V L G     LK  L  S +   +H   ++      
Sbjct: 367 NGW----ISQL--KAKAKAVVLFGQDKEQLKSLLQSSNYIGGIHCCSSLKEAVPL 415


>gi|227544876|ref|ZP_03974925.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300909904|ref|ZP_07127364.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
 gi|68160890|gb|AAY86891.1| lr1633 [Lactobacillus reuteri]
 gi|227185150|gb|EEI65221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300892552|gb|EFK85912.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
          Length = 456

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 120/350 (34%), Gaps = 42/350 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++++TGS GKTTT  +    + +    Y    + N  I        +  D D  + 
Sbjct: 110 FDGHLVSVTGSNGKTTTTTLT-QLMIAENAKYQVKYAGNIGISFSKIAEDLGPD-DTLVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L         + PHIA+IT I   HL      E   +AK  I     K   + +
Sbjct: 168 ELSSFQLLG----APTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVI 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSM- 281
           N+D   ++ +  +S A    TI  F           +  +  E S++E   +  +G+ + 
Sbjct: 224 NWDRDEWQKIAQRSQA----TIVPFS----------RLNKSHEGSYVEDGMIYWRGQEVM 269

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  IG    +N L  +    +     D   K L+ F    G   R +  +      
Sbjct: 270 PTKDIRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFS---GVRHRLQYVMEYQERL 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + +  + + A+            R + +L    + G   +       + +    
Sbjct: 327 FYNDSKSTDIEATEVALQGFD--------RPVVLLAGGLDRGYTFERLVPYFKKHVKAM- 377

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + G     +KDA  +  + V  SE               GDV+++
Sbjct: 378 ----IVFGECKDKMKDAGNQAGVPVIESENAITAVPEAWKLSEPGDVILL 423


>gi|218509398|ref|ZP_03507276.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Brasil 5]
          Length = 248

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 27/224 (12%)

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-------HGIGYHMAQNMLMTLGI 302
           +G++  AD + +  +    +S  +V+++ +    V           G H   N    + +
Sbjct: 15  YGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNATAAIAV 74

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + L        K L+ F   +   +R+          + D+ Y  +P  +KA   VL  
Sbjct: 75  ANRLGISSVDIAKGLASFGGVK---RRFTLTGEWNGVQIFDD-YGHHPVEIKA---VLRA 127

Query: 363 ISPHGEGRRIAV--------LGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLA 413
                +GR IAV        L  + E  E +  F+  D   +  +Y      + G    +
Sbjct: 128 AREACKGRIIAVHQPHRYSRLASLFE--EFAACFNDADSIFLAPVYAAGEDAIEGVDSTS 185

Query: 414 LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L   +    H    +  + + L   +      GD VV+  + S 
Sbjct: 186 LVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAGSI 229


>gi|212715559|ref|ZP_03323687.1| hypothetical protein BIFCAT_00457 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660926|gb|EEB21501.1| hypothetical protein BIFCAT_00457 [Bifidobacterium catenulatum DSM
           16992]
          Length = 521

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 36/302 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KTYACIGSYNNHIGV 149
           ++  + + L +    + + G+ GKTTT  ML   L+          +YA  GS     GV
Sbjct: 117 HRSDILSLLMNTKRAVTVAGAHGKTTTSSMLAHILTHAGEGNLADPSYAIGGSIQGKDGV 176

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L         D  + E   S     ++      P IA++T     HL ++   E   +A
Sbjct: 177 MLDGGHAGQG-DVLVAEADESDGSFAKY-----HPEIAIVTNSEADHLDHYGTQENYRAA 230

Query: 210 KAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIY-------SFGKSKNADFQLR 261
             +         ++ +  DD     +L+A   +    T+        S G    A F   
Sbjct: 231 FVD--HVQHAVKSVVMCGDDEGNLAVLRALDASAAAHTVVYATQDEASLGDLNGAAFVHI 288

Query: 262 KWKQCSEQS---WMEVQLQGKSME-------VVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           + +  S QS      + +    ++       V     G H A+N    +   ++L  D++
Sbjct: 289 ESESESAQSGAEHFTLHVPAGLLDGQERMVPVTLTVPGIHNARNASAAIIAAALLGVDIE 348

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A +  + F    G  +R++        T++D+ Y  +P  + A +    +  P    R 
Sbjct: 349 KAAEVTTSFL---GAARRFQVRGTVSQVTVVDD-YAHHPTEISALLDAARRKYPQSAIRV 404

Query: 372 IA 373
           I 
Sbjct: 405 IF 406


>gi|326791416|ref|YP_004309237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542180|gb|ADZ84039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
          Length = 457

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 130/378 (34%), Gaps = 43/378 (11%)

Query: 84  PVFGVDDVLGALNKL----AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           P   V  +   L K        A    KA IIAITG+ GKTTT  ++   +     +   
Sbjct: 82  PEIEVVQLAKQLGKKITGEFEFASWYCKAPIIAITGTNGKTTTTTLVGEIMKKYNPSTYV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           +G+          + ++P +    + E+    L           P I+ +  I P HL+ 
Sbjct: 142 VGNIGR--AFSEEVLQIPEN-GIVVAEVSSFQL----ETADTFHPFISALLNITPDHLNR 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----N 255
              +E   + K  IF+   + G   LN  D ++E  K +  A       SF   +     
Sbjct: 195 HHTMENYCACKYNIFKNQPEEGYSLLNTKDHYYEEAKKQVKA----RCMSFSLQEIPDCG 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A  Q     +    +   +      +E   H  G H  +N L  + + +      +   +
Sbjct: 251 AYVQADTLYENVHGTAHAIC----KIED-LHIKGTHNVENALAAIAMAAAFGVPGNLIRE 305

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+ F   E    R    L +      ++S   N  +  A +  LS ++     R IA  
Sbjct: 306 VLTTFKGVE---HRTEYVLTKRGVDFFNDSKATNTDAAIAGLVGLSSLNKPI--RLIA-- 358

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLAL-KDALPRSI-HVHYSETMD 431
           G M               + +  +N  +  V++ G     + K+ L      V   ET++
Sbjct: 359 GGM--------DKQTSFKDWIKHFNGLVEKVYIIGETKQQIVKECLEEGFTQVATFETLE 410

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  +     + +++
Sbjct: 411 DAIKAAYNESKANECILL 428


>gi|304310316|ref|YP_003809914.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
 gi|301796049|emb|CBL44253.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
          Length = 442

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 28/329 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  I+AITGS  K+T   ++   +    ++    G+    +   L + +     +F 
Sbjct: 97  REVKTPILAITGSNAKSTVTTLMGEMVKGSGRSVVVGGNIGVPV---LDVLQEAQSAEFC 153

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L      T+ +R H+A I  I+P HL  +  ++E  +AK  I+     T   
Sbjct: 154 VLELSSFQL----ETTYSLRAHVATILNISPDHLDRYPSMKEYTAAKHRIYRNARHT--- 206

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DDS         H +  +  + F  +++   +    +     SW+ V  +      
Sbjct: 207 VANADDS-----ATLPHPMFTEHDWRF-TTRSPSARTFGLQLNESASWLGVANEALMPVS 260

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L I S    ++   +  L  F    G   R      +      +
Sbjct: 261 ELRIKGRHNQANALAALAIGSAAGLEMQHMLNTLREF---RGLAHRCEWIRERDGVQWYN 317

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AAI  +        G+ + V G     G+   +  ++L + +  Y +  
Sbjct: 318 DSKGTNVGATVAAIDGIGS---EISGKIVLVAG-----GDGKGADFVELQKPVEKY-VKA 368

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDG 432
             L G     ++  L     +    ++  
Sbjct: 369 AVLLGQDAAKMERVLAPHCTIKRVSSLQD 397


>gi|218442054|ref|YP_002380383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7424]
 gi|226711905|sp|B7KH28|MURD_CYAP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218174782|gb|ACK73515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7424]
          Length = 449

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 122/360 (33%), Gaps = 31/360 (8%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              + + V   D  +  + +L +A R  +  + + ITG+ GKTTT  ++     +     
Sbjct: 76  PWDIPVLVEARDQGIDTIGELELAWRYLNGCSWVGITGTNGKTTTTALIAAIFKAAGLNA 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+          LA      D+ I E+    +      +  + P I + TT  P HL
Sbjct: 136 PACGNIG---YAACELALTQQSYDWIIAEISSYQI----ESSATLSPKIGIWTTFTPDHL 188

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                ++     KA +     +      N DD +   L     +    + ++  K K A 
Sbjct: 189 ERHKTLDNYYQIKASLLSRCRRQ---IFNGDDPY---LHNIGLSQWKDSYWTSVKGKEAL 242

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                     + +W+    +  +   +   +G H  QN+LM +G   +   + D   +A+
Sbjct: 243 LCDPSKGIYLQDNWIVAFGELIAPINLFKMVGEHNQQNLLMAVGAARLADINKDAIAEAM 302

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F        R            I++S   N  + +  +S +           I + G 
Sbjct: 303 ATFSGVP---HRLELIRTIAGVDYINDSKATNYDAAQVGLSSVEA-------PVILIAGG 352

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
             + G+ ++         L    ++ V L G         L  S +  Y   ETM+    
Sbjct: 353 QAKKGDDTEW------IKLIKAKVATVLLIGEAASTFAQRLQESDYYAYEIVETMENAVE 406


>gi|86134326|ref|ZP_01052908.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
 gi|85821189|gb|EAQ42336.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
          Length = 450

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 117/316 (37%), Gaps = 43/316 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  +   +      +A +G+ GKTTT  ML   +   K T    G    +    L L 
Sbjct: 99  LKRAEILGEITKSTFCLAASGTHGKTTTSSMLGHIMEPEKATSFL-GGVAENYNSNLILG 157

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS---GIEEIASAKA 211
               +    + E        ++     + P+IA +T++   HL  +     +EE   A +
Sbjct: 158 ----EDKITVVEADEFDRSFLQ-----LSPNIACVTSMDADHLDIYGEASSLEESFVAFS 208

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                 + + T+ +             +  L ++   ++   + AD++    K       
Sbjct: 209 W-----KVSDTLIV-------------AKGLPLEG-LTYAVDEPADYKAYNLKIKEGTYV 249

Query: 272 MEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +VQ    S++ +  H  G H   N L  L +  +    ++     L+ F   +   +R+
Sbjct: 250 FDVQTPTSSIQNIELHLPGKHNVMNALAALAMADVYGVSLEKIKVQLASFKGVK---RRF 306

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +      LID+ Y  +P  + A  S + ++ P+   + +A+      +   ++ F  
Sbjct: 307 SYKIKTKELVLIDD-YAHHPTEINAVESSIREMYPNE--KVLAIF--QPHLFSRTKDFVD 361

Query: 391 DLAEVLSLYNISHVWL 406
           D A  L+L     V L
Sbjct: 362 DFA--LALSKFDEVIL 375


>gi|323466805|gb|ADX70492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           helveticus H10]
          Length = 459

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 113/352 (32%), Gaps = 41/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S A  + +TGS GKTTT  +    L             +G+    I   +  A      D
Sbjct: 111 SDAPYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---D 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  +  +   V   + +   +   HL      E   +AK  +        
Sbjct: 168 ILVVEISSFQLLGVTDIDPKVAAIVDIYNNV---HLDYHKTFENYVNAKLNVTRTQNSDD 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               NYD    + + AK   +    + +F +   +AD+ +      S+          K 
Sbjct: 225 YFIANYDQ---KDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLESQ--------NEKI 273

Query: 281 MEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           M++V     G H  QN L+ + I  ++ AD D     LS F    G   R +        
Sbjct: 274 MKIVDIKLPGIHNLQNSLVAIAISKVMGADNDDIAAVLSTFT---GAKHRLQYVTTLDGR 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S + N  +   AI    +      G            G        DL  +    
Sbjct: 331 KVYNDSKSTNIEAATVAIPSFKEPEVLIAG------------GLDRGFLFDDLVPLFKK- 377

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + L G     L DA  ++    +    T+              DV++ 
Sbjct: 378 HVKSIVLYGETKYLLADAARKAGIKDIVIVNTLQEAVPRAYELSEPDDVILF 429


>gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
          Length = 580

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 135/445 (30%), Gaps = 77/445 (17%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
           + I       +NG+  +S        F   KG  +   +++  A++KGA   + +     
Sbjct: 50  NKITAAADSLINGLDSNSLYSQKHHIFVC-KGAAFKP-EYLQDALKKGATAYMCDNTHAQ 107

Query: 77  SIG--SLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIAL-- 130
           ++           V+++  A+ + A        ++   + ITG+ GKTTT  M+   L  
Sbjct: 108 ALRTYCPHAVQIVVNNIRLAMAQAAPLAWGHPDTRLITVGITGTKGKTTTACMIKSILDA 167

Query: 131 ---------SSIKKTYACIGSY------------NNHIGVPLTLARMPVDVDFGIFELGM 169
                    S  K     +GS             N     P     +    + GI  + M
Sbjct: 168 RAQRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITHMVM 227

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFL 225
             S           +   +A+   I+P H+S       E+   +K  IF          +
Sbjct: 228 EISSQALKHHRVDGLHLDVALFLNISPDHISKVEHPTFEDYFLSKLMIFSM---ANAAVM 284

Query: 226 NYDDSFFELLKAKSHA-----------------------LGIKTIYSFGKSK-----NAD 257
           N D   FE + A +HA                       L  K + S  K+       AD
Sbjct: 285 NLDADHFEAIYAHAHACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTLPAD 344

Query: 258 FQLRKWKQCSEQSWMEV----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 +                  +  +      G     N L  +    +L  +    
Sbjct: 345 IAAHDIRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNTSDI 404

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L+  H     G+      +      I + Y  N  S +   S L+   PH   + IA
Sbjct: 405 QQGLANTH---VAGRMEFIPTHTQNIQGIVD-YAHNKLSFRCFFSDLAHEFPHY--KIIA 458

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSL 398
           + G     G  +     DL E  + 
Sbjct: 459 LFGAP---GGKAFDRRRDLVEEAAK 480


>gi|148926039|ref|ZP_01809725.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845518|gb|EDK22610.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 432

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 86  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 143 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L           KN   ++  +K     + 
Sbjct: 192 AYAEFLDTAKIRVINAEDEFLKNYKNESTKLYPNKDI-----KNCTMRIENFKPF---TS 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 244 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 296

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 297 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 354

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 355 FAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFVE 393


>gi|27381715|ref|NP_773244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium japonicum USDA 110]
 gi|62900585|sp|Q89FU5|MURD_BRAJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27354884|dbj|BAC51869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium
           japonicum USDA 110]
          Length = 466

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 124/429 (28%), Gaps = 55/429 (12%)

Query: 56  FILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F    +  G  L   V    V       + V G  ++           R    A  +AIT
Sbjct: 66  FAALVLAPGVPLTHPVPHWSVLKAREAGVEVIGDIELF-----CRERRRHAPDAPFVAIT 120

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GK+TT  ++              G+    I         P      + E+    +  
Sbjct: 121 GTNGKSTTTALIAHLTKVAGYDTQMGGNIGTAILS----LEPPRTGRVHVIEMSSYQID- 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              LT  + P + ++  ++  H+     I   A+ K  +  G++  GT  +  DD +   
Sbjct: 176 ---LTPSLDPSVGILLNVSEDHIDRHGTIAHYAAVKERLVAGVQAGGTSIVGVDDGYCRD 232

Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  +    G   +  S      +   +      + +  +  EV   G     +    G H
Sbjct: 233 IADRLDRAGKNVVRISVKNPLASGIHVEHGTIVRTAGGARSEVAKLGG----IGSLRGLH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            AQN          +    D     L  F    G   R      +G    +++S   N  
Sbjct: 289 NAQNAACAAAAALAMGISQDVLQDGLRSF---PGLAHRMEQVGRRGNVLFVNDSKGTNAD 345

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +   A+S  + I     G+  A  G +  +                   I   +L G   
Sbjct: 346 ATAHALSSFADIFWIAGGKPKA--GGITSLTGFFPR-------------IRKAYLIGEAA 390

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVD----GDVVVV---KSS---------NSC 455
                 L   +    S+T+D                  VV++    +S            
Sbjct: 391 QEFSGTLGTQVAHEISQTLDVAVEHAARDAEASGLTDAVVLLSPACASFDQYRNFEIRGT 450

Query: 456 GFYRLINLL 464
            F  L+  L
Sbjct: 451 KFRELVQAL 459


>gi|325915271|ref|ZP_08177591.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538464|gb|EGD10140.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 452

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A         +  FG     ++  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDARLAEVLAMG---CWTPVERFGFDAALEWSARLI--AADGSTF 262

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  + +V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 AVAHRGVEIGQVQWPLVGRHNVLNGLAALAAVHAVGVDPATVMPALAQFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
                   T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VLGQARDITVYDD-FAHHPTAIA---TTLQGLRAKVGAARVLV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P    V    H +  ++ L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELPWDAAPIIAQVRGQAHVAHDVEALLQTLGDIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|224824594|ref|ZP_03697701.1| UDP-N-acetylmuramate [Lutiella nitroferrum 2002]
 gi|224603087|gb|EEG09263.1| UDP-N-acetylmuramate [Lutiella nitroferrum 2002]
          Length = 458

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 143/427 (33%), Gaps = 57/427 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I + V++G    ++   M   +  +S P +  ++VL                 ++A+ G+
Sbjct: 67  IGNVVKRG--TPLMEEIMNRGLPYISGPQWLAENVLA-------------DKWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPV-----DVDFGIFELGMS 170
            GKTTT  ML   L          IG    + G+   L   P         F + E    
Sbjct: 112 HGKTTTSSMLAWILEDAGLAPGFLIGGIPQNFGISARLPGAPALDPASRSPFFVIEADEY 171

Query: 171 HLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                   +  V   P  AV+  +   H   F+ +  I +    +   +   G +  N  
Sbjct: 172 DTAFFDKRSKFVHYHPRTAVLNNLEFDHADIFADLAAIQTQFHHLVRTVPGNGRLISNGR 231

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287
           ++  + +           +  FG    A +QL       +Q   +V L G+    V    
Sbjct: 232 EASLDEVLEHG---CWTPVERFGV--EAGWQLADV---DDQGHFDVLLGGELQGRVRWDL 283

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L  +         V  AI AL+ F   +   +R          T+ D+ + 
Sbjct: 284 LGEHNRLNALAAIAAARHAGVAVKDAINALARFQNVK---RRMEVRGVAAGVTVYDD-FA 339

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISH 403
            +P ++   +  L      G    +AVL      M  +G +  +    L E         
Sbjct: 340 HHPTAIATTLEGLR--RKVGRSPILAVLEPRSNTMK-LGTMKAALPGALTE------ADQ 390

Query: 404 VWLSGFHV--LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           V+  G ++     +   P          ++ L   I +    G  V+V  SN  GF    
Sbjct: 391 VFCYGANLGWDPAEALAPLGDKAASFNDLERLIAAIVARAEPGSHVLVM-SNG-GFGGIH 448

Query: 459 -RLINLL 464
            +L++ L
Sbjct: 449 QKLLDAL 455


>gi|89093868|ref|ZP_01166813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanospirillum sp. MED92]
 gi|89081754|gb|EAR60981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanospirillum sp. MED92]
          Length = 443

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 135/411 (32%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+ ++       +        ++  L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPAVEYVLDKGLKYTSGPQWLSEYLLQDKWVLAVSGTHGKTTTSTMLAW 111

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          IG    + G+   +   P    F + E            +  V   P 
Sbjct: 112 ILEHAGMQPGFLIGGVPLNFGISARVGESP----FFVIEADEYDTAFFDKRSKFVHYHPR 167

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V+  +   H   F  +  I      +   +   G I L   +S  + +          
Sbjct: 168 TLVMNNLEYDHADIFPDLAAIQRQFHHVVRIVPGNGQIILPQGESALDEVLEM--GAWSP 225

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVS 304
            + +  ++ + ++Q R      +    EV  QG    VV     G H   N L+ +    
Sbjct: 226 VVRTSLQNDDCEWQARLL--SEDGRCFEVLHQGAVQGVVNWSMTGKHSVNNGLIAIAAAR 283

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      AI+AL+ F   +   +R           + D+ +  +P +++  +  +   +
Sbjct: 284 NVGVQPVHAIEALNEFGGVK---RRMELLGEVDGIKVYDD-FAHHPTAIETTLEGIR--A 337

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLS---GFHVLALKDALPR 420
             GE + +AV+    E    +         +    N    V+     G +    K     
Sbjct: 338 QVGEAKVVAVI----EPRSNTMRLGTHQGMLADSVNQADQVFWYQPQGLNWSLDKVVEQG 393

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
            +        + L   +   +  G  VV+  SN  GF     RL++ L  +
Sbjct: 394 QVPAVVYSDTEVLISDLVDQITPGAHVVIM-SNG-GFEGIHHRLLDALRAK 442


>gi|192292416|ref|YP_001993021.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286165|gb|ACF02546.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris TIE-1]
          Length = 469

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 85/246 (34%), Gaps = 20/246 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L          G+    I         P D    + 
Sbjct: 112 PRAPFVAITGTNGKSTTTALIAHLLREAGWDTQLGGNIGTAILS----LEPPKDGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTSII 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSK-----NADFQLRKWKQCSEQSWMEVQLQGKS 280
             DD F      +    G + +    +        AD  L   ++       EV   G  
Sbjct: 224 GVDDEFGRAAADRIERAGKRVVRMSVQGPVQSGITAD--LETIRRIDGGKSTEVAKLGG- 280

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFF 339
              +    G H AQN       V  L    +   + L  F     R ++  R    +G  
Sbjct: 281 ---IGSLRGLHNAQNAAAAAAAVLALGVSPEVLQQGLRSFPGLAHRMEQVGRQVGEKGTT 337

Query: 340 TLIDES 345
             +++S
Sbjct: 338 LFVNDS 343


>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
 gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
          Length = 478

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 108/354 (30%), Gaps = 37/354 (10%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             +  II ITG+ GKTT   M+ +            G+ +      +            I
Sbjct: 118 SKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNISPSALTVVCEFEEKNSWPDVI 177

Query: 165 -FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             EL  + L    F T  +    + I  I   H+     +E   ++K +IF     +   
Sbjct: 178 SLELSSAQL----FYTDYICLDASTILNITQDHIDWHGSMEAYIASKKKIFSH---SKIA 230

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +  D++ F+        L    +Y         D  +++        W     +     
Sbjct: 231 VV--DENQFKEF-----GLSNALVYRDSLPINKEDIGIKEVNGMK---WFCTTDKNLMPV 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N +  + +   +    +  + A       E    R     +      I
Sbjct: 281 EAMKIRGNHNVLNAMAAMQLCRAIDLPFEPLLTA---LRDYEAHNHRCTYVRDIQGVNFI 337

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  AAI              + +LG   +  + +   +  L        + 
Sbjct: 338 DDSKGTNVGATVAAID-------GMYRNLVVILGGEGKGQDFTP-LYESLRNRTKSNGLK 389

Query: 403 HVWLSGF------HVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L G       H L +KD     +I V    T+D   +        GD+V++
Sbjct: 390 GIVLIGKDKNILSHYLNIKDFKFEETIPVVVVNTIDEAVVESFKLAQSGDLVLL 443


>gi|15889380|ref|NP_355061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
 gi|30316074|sp|Q8UDM6|MURD_AGRT5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15157230|gb|AAK87846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
          Length = 469

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 114/355 (32%), Gaps = 48/355 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L S  +     G+    +         P    F + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILQSSGRDTQLGGNIGTAVLS----LDPPKAQRFYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +GT  +
Sbjct: 168 ECSSYQID----LAPTINPTAGILLNLTPDHLDRHGTMQHYADVKERLVAG---SGTAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKT-------IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             DDS   L+  +    G+K        + S G         +  +     S + V L G
Sbjct: 221 GVDDSHSTLIADRIERAGVKVERISKRNVVSEGLYAEG---SQILRAHGGTSSLLVDLDG 277

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +    G H AQN    +     +    +      +      G   R +    +G 
Sbjct: 278 -----IQTLRGSHNAQNAAAAIAACLAVGVSEEEI---RAGLKSFPGLKHRMQPVGRRGN 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T +++S   N  +   A+S   +I     G     L     +  LS  F          
Sbjct: 330 VTFVNDSKATNADAAAPALSSFDRIYWIAGG-----LPKAGGITSLSPLFPR-------- 376

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF----IQSSLVDGDVVVV 449
             I+  +L G         L  ++    S T+D          +     G+VV++
Sbjct: 377 --IAKAYLIGEAAAEFAATLGEAVPYEISGTLDKAVQHAAADAEKDATAGNVVML 429


>gi|163846336|ref|YP_001634380.1| UDP-N-acetylmuramate--alanine ligase [Chloroflexus aurantiacus
           J-10-fl]
 gi|189028982|sp|A9WG70|MURC_CHLAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163667625|gb|ABY33991.1| UDP-N-acetylmuramate--alanine ligase [Chloroflexus aurantiacus
           J-10-fl]
          Length = 474

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 145/444 (32%), Gaps = 58/444 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD    A  +GA +V+    +  +   L          +  L++  +      +  +IA
Sbjct: 52  GHD---PAYVQGADVVLATAAIRGTHPELEAAAAA---GIPRLSRADLWRLWSEQRPVIA 105

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKTTT  +  +AL         +      +      A+        + E      
Sbjct: 106 IAGTHGKTTTTALTALALRGAGIRCGFL--IGADVPALGGSAQWGDPEAPLVIEA----- 158

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E   +   + P +A+IT +   H   +    E  +A A     +     + +  DD   
Sbjct: 159 DEYDRVFLALTPALAIITNVEWDHPDVYPTPSEYTAAFAAFSRQVRDPRRLLVCADDPGA 218

Query: 233 ELLKAKSHALGIKTIYSFGKSKNA------------DFQLRKWKQCSEQSWMEVQLQGKS 280
             L  +S A        +G  ++             D+        +     ++    + 
Sbjct: 219 LALAGQSEARL------YGIDEHIATDPVSCRLAPLDWTASGVTGTATGQQFDLWYYDRR 272

Query: 281 -------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    V     G H  +N    L   ++  AD+ TA+ AL+ +    G  +R+   
Sbjct: 273 SFGRRLAATVTLAIPGEHNVRNATAALAAAALWGADLRTAVTALAEY---RGSSRRFEWR 329

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----- 388
            + G  T+ID+ Y  +P  ++A +  L+    + + R I  L         ++S      
Sbjct: 330 GDVGGITVIDD-YAHHPTEVQATL--LAARQRYPDRRLIVYL--QPHTFSRTRSLWDQWP 384

Query: 389 ----HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
                  +  V  +Y             +L D L    I   Y+         + +    
Sbjct: 385 AAFREAAVVLVGDIYPAREQGDPVALAQSLVDHLIAHGIPARYAGPSALAPSALLAVAQS 444

Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467
           GDVV+   +      ++    LE+
Sbjct: 445 GDVVLTLGAGDS--DQVAAAFLEQ 466


>gi|329770442|ref|ZP_08261824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
 gi|328836565|gb|EGF86225.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
          Length = 446

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 124/347 (35%), Gaps = 40/347 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITG+ GKTTT +M    L    K     G+    IG P             I 
Sbjct: 106 FNVDMVAITGTNGKTTTTQMTYDILKQSNKDVYLAGN----IGYPSIEVAYNHPNSLIIT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T   RP IA IT +   HL     IE   +AK +I++    T  + L
Sbjct: 162 EVSSFQLEG----TKYFRPSIAAITNLGEGHLDYHKSIENYRNAKRKIYKNQVDTDFLIL 217

Query: 226 NY--DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           N    D +       S        Y    + +AD  ++     +   + +V+L   +   
Sbjct: 218 NIKEKDKY-----NISEINSNIIFYDTKFNTDADVYIKD----NMVIYGDVELFDST--- 265

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N +    I     AD+++  K L  F   +    R +           +
Sbjct: 266 KLTLPGLHNVENGINAAVIAYKKGADIESIRKVLYNFSGVK---HRLQYVGENKGIKYYN 322

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP    A I+ LS    +     + + G      +    FH +L+  L+   +  
Sbjct: 323 DSKATNPV---ATINALSGFEKNV----VLICGGQ----DRGIDFH-ELSPYLNR--VKT 368

Query: 404 VWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + + G     LK  A   +++   +  +D          V GD++++
Sbjct: 369 MVVVGESADILKSLADKNNVNCIKAIKIDDATEKASKLAVTGDIILL 415


>gi|33603367|ref|NP_890927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella bronchiseptica
           RB50]
 gi|33577491|emb|CAE34756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella bronchiseptica RB50]
          Length = 456

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 125/378 (33%), Gaps = 45/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             A ++A+ G+ GKTTT  ML   L  + ++    IG     + V    AR        +
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVS---ARYAPGARPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +   G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQ 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           + L  D    E +  +        +  FG      +Q        EQ   EV + G+   
Sbjct: 218 LVLPTDAPALERVLERG---CWTPVARFG--PGGQWQA---GPADEQGAFEVSVDGRDAG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H  +N L  L             I+ALS F   +   +R           +
Sbjct: 270 TVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVK---RRMELRGTVNGIRV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P ++   I  L      G  R +AVL      M  +G ++      LA    
Sbjct: 327 YDD-FAHHPTAIATTIEGLR--RQVGAARILAVLEPRSNTMK-LGTMAARLPEALA---- 378

Query: 398 LYNISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 V+  G H           +   P        + +  L   + ++   GD V+V 
Sbjct: 379 --GADLVFCFGDHAGKHALGWDPARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVM 436

Query: 451 SSNSCGF----YRLINLL 464
            SN  GF     +L++ L
Sbjct: 437 -SNG-GFGGVHGKLLDAL 452


>gi|319407505|emb|CBI81153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella sp.
           1-1C]
          Length = 468

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 117/407 (28%), Gaps = 47/407 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +F+   +  G  L       V       +I + G  +  V      L            I
Sbjct: 65  EFVALILAPGVPLTYPRPHWVVEKARQENIEIIGDIELFVRARNLFLQQNGFDDQDVPFI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L   L  +       G+    I       +  V     + E     
Sbjct: 125 AITGTNGKSTTTALLAHLLEKMGYDVQMGGNIGTAIL----TLKPFVKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     L   ++P + ++  + P H+      E     K  +     +     ++ D   
Sbjct: 181 I----ELAPSLQPTVGLLLNLTPDHIDRHGSFERYVQVKERVVSRASR---ALISIDSLV 233

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHH 286
              L  K  + G      +     +   + K     E + +     G+      +  +  
Sbjct: 234 CCALYQKLFSEG------YSIDPVSKEHVVKNGFYVEGTKLFAIYHGQHHMLADLANITS 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A+N LM L  + IL                  G   R +     G    I++S 
Sbjct: 288 LRGSHNAENALMALATLQILKITTLDI---EEHLASYLGLAHRMQQVCKIGSILFINDSK 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S   A++  + I          V G   E G  +             Y I   +L
Sbjct: 345 ATNAESSVPALTTFNNIF-------WIVGGQEKEGGIDALKGF--------FYKIRKAYL 389

Query: 407 SGFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G            A P S+ ++    +          +    VV+ 
Sbjct: 390 IGSAAENFARIIGSAFPFSMSLNLENAVREAASDAARDMEKEAVVLF 436


>gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 517

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 144/430 (33%), Gaps = 48/430 (11%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + IQG      P           GI+ D+R + P       KG  +   +++    + 
Sbjct: 18  LREIIQGDVWTDDPARIASTDEPFAGITYDTRKVTPGTL-LCCKG-RFKA-EYLNGIDEA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           G    V  T+  A+  +   P   V+D   A++ L+       +++ T+I +TG+ GKTT
Sbjct: 75  GLAAYVAETEYSAATAA---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTT 131

Query: 122 TKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDVDFGIFELG 168
           T       ++++     A   S +N +     +             RM  +      E  
Sbjct: 132 TSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYL 191

Query: 169 MSHLGEIRF---LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           +  +    +     + +   +A    I+P H+S       E+    K +I    +    +
Sbjct: 192 VMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAKS---L 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQG 278
            L  D    +LL+  + A GI          +     AD     W   +  +   +    
Sbjct: 249 VLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVA--WPADTAHASFHIADGD 306

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +++   H  I G     N    + I       +D A  AL         G+  +    Q 
Sbjct: 307 QTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDA-GALHAIESVRIAGRMEQFRDPQS 365

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I + Y  N AS+ A +  + +       R   V G     G  +     ++ E   
Sbjct: 366 NTLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGS---AGNKAYDRRKEIVEAAE 421

Query: 398 LYNISHVWLS 407
               + ++ +
Sbjct: 422 NRIANFIFTA 431


>gi|194476888|ref|YP_002049067.1| UDP-N-acetylmuramate--alanine ligase [Paulinella chromatophora]
 gi|171191895|gb|ACB42857.1| UDP-N-acetylmuramate--alanine ligase [Paulinella chromatophora]
          Length = 470

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 123/393 (31%), Gaps = 54/393 (13%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSY 143
           VF   DVL AL          ++   IA+ GS GKTTT  ++   LS+      A IG  
Sbjct: 101 VFHRSDVLAALI---------NRQLSIAVAGSHGKTTTSTLIATFLSNSNHDPTAIIGGI 151

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
              IG         +     + E+  S    ++F   L      +IT +   H ++++  
Sbjct: 152 LPAIGCNGYGGMGNL----LVAEVDESDGSLVKFRASL-----GIITNLELDHTNHYAKF 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            ++ +       G  +   +  N D                +  +S    +   F     
Sbjct: 203 RDLITTMQYFASGCSR---LLANRDCPVLRDY------FTAQEWWSNEIYEGVKFAGIPV 253

Query: 264 KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               + + ++    G+ M        G H   N+   +    +   ++D           
Sbjct: 254 SLKGDHTLVDFYEDGELMCRFELPLPGLHNLSNITAAVASCRLQGLNLDRL---TINLVK 310

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-------RRIAVL 375
            +   +R+          +I + Y  +P+ +KA + +   +     G       R IAV 
Sbjct: 311 LKPPSRRFDY-CGTWKSRIIVDDYAHHPSEVKATLGMARLMVQSHSGPLPQSPLRLIAVF 369

Query: 376 GDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALK---DALPRSIH 423
                    +  F    A  L          +Y+     + G     L    + +   + 
Sbjct: 370 --QPHRYTRTAEFLESFAMALVNADQILIAPIYSAGEKPIPGISNATLASVIERIRPDLI 427

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              +     L   ++S    GD++++  +    
Sbjct: 428 TLVANNYTQLIQQMESFTQPGDLILMMGAGDMN 460


>gi|315658530|ref|ZP_07911402.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
 gi|315496859|gb|EFU85182.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
          Length = 449

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 127/345 (36%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTTT  ++    S  + T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTTTSLIGDMFSKSRLTGRLSGNIG---YVASKVAQDTHPDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT I  AHL     +E   +AK +I++       +  
Sbjct: 166 ELSSFQLLGIDK----YRPHIAIITNIYSAHLDYHGTLENYQNAKKQIYKNQTADDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + + +        
Sbjct: 222 N----YHQRHLIESEQLKAKTLY-FSTQQEVDGIYIKDNFIIYKGVRI-INIDD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    V   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASLLAGVPVKAIIDSLTTFS---GIEHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++  +Q         I  L    + G        +L   +    I  V
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNDFD----ELIPYMKHVRIMVV 374

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +        +K    +  +V  +  +      +Q  +   DVV++
Sbjct: 375 FGE-TQEKFVKLGTSQGKYVIKATDVTDAVDKVQDVIEPNDVVLL 418


>gi|158316854|ref|YP_001509362.1| UDP-N-acetylmuramate--alanine ligase [Frankia sp. EAN1pec]
 gi|158112259|gb|ABW14456.1| UDP-N-acetylmuramate--alanine ligase [Frankia sp. EAN1pec]
          Length = 499

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 126/400 (31%), Gaps = 54/400 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGV 149
           L  L + A  A L +    +A+ GS GKTT   MLT AL +     T+A  G        
Sbjct: 99  LRVLTRSAALAGLMAGHRGVAVAGSHGKTTVAMMLTAALQACGADPTFAVGG-------- 150

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                        G  EL +    E       ++P+ AV+T +A  HL ++  +  +A++
Sbjct: 151 --DPGEAGSHTHAGSSELMVVEADEDAGAFWQLQPYGAVLTGVAAEHLDHYRTMPALAAS 208

Query: 210 KAEIFEGLEKTGTIFLNYDD-----------SFFELLKAKSHAL-------GIKTIYSFG 251
            A     ++  G +    DD              +  +    +        G   +  +G
Sbjct: 209 FATFLRRVDPGGFLVACVDDAAGWALATAAADHADRWRRAGASASASAPDGGRPWLTGYG 268

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              +AD +L   +     +  EV + G  +  +     G H   +    L     L A  
Sbjct: 269 FGPSADVRLVAEEISIAGTSAEVVVHGVRLGRLSLRVPGRHHLLDAAAALAAGIALGAPP 328

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              +   +      G  +R+    + G   ++D+ Y  +P  + AA+      +  G   
Sbjct: 329 AGLL---AGLTEFAGVRRRFESLGSAGGVRVVDD-YANHPDRVAAAVEAARAAAGGGRVV 384

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALK------------ 415
                     +   +          L   +   +  V+ +G                   
Sbjct: 385 VAF----QPHLYSRTALLADRFGAALGSADAVVVMDVYGAGEQPEPGAGGARVAAATRSG 440

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            A   +  V Y  +   +   +      GD+V+   +   
Sbjct: 441 AARVGAARVVYEPSWSAVPGVLMDLARPGDLVMTLGAGDV 480


>gi|120555313|ref|YP_959664.1| UDP-N-acetylmuramate [Marinobacter aquaeolei VT8]
 gi|120325162|gb|ABM19477.1| UDP-N-acetylmuramate [Marinobacter aquaeolei VT8]
          Length = 464

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 13/257 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG       V   L       DF + E  
Sbjct: 105 VMAVAGTHGKTTTTAMLLWILDQAGFDAGYLIGGVPQDFPVSARLG----SSDFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  +  RP+  ++  +   H   F  +E I      +   +   G I   
Sbjct: 161 EYDSAFFDKRSKFIHYRPNTLILNNLEFDHADIFDNVEAIERQFHHLVRTVPSQGLIVRP 220

Query: 227 YDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D   +          ++ T      S+ AD++     +   + +M +  +     +  
Sbjct: 221 ARDRHLDNALEMGCWSPVQDTAIGSEISRTADWRAELLAEDGSR-FMVIHHEQPVATLKW 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +     +    D A+ AL  F   +   +R       G   + D+ 
Sbjct: 280 GLTGLHNVRNALSAIAAARHVGVTPDHAVAALCRFSGVK---RRMELVGEIGGVRVYDD- 335

Query: 346 YNANPASMKAAISVLSQ 362
           +  +P ++ + +  L  
Sbjct: 336 FAHHPTAIASTLEGLRN 352


>gi|315924805|ref|ZP_07921022.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621704|gb|EFV01668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 457

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 110/321 (34%), Gaps = 29/321 (9%)

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S       +G+    +   +   R     D  + EL    L  I        P  A I  
Sbjct: 137 SRYAHVYTVGNIGEAVSKHV---RTSTAADLFVSELSSFQLETIDTFA----PKAAAILN 189

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +AP HL+    +E   +AKA IFE       + +N DD+  ++++    A   K  +S  
Sbjct: 190 LAPDHLNRHGTLENYYAAKARIFENQSAEDILVVNADDA--DVVRCVRKAPSRKIWFSLK 247

Query: 252 KSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                   L+      +E +  + Q      E      G H   N +  +G+   +   +
Sbjct: 248 GRPEKGIYLKGQTLMIAEGTDAD-QDTAVITEEALGIKGPHNVMNAMAAIGLAYFMGVPL 306

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               K L  F   E    R       G    I++S   N     AAI+ L+ ++      
Sbjct: 307 VIIQKTLRAFKGVE---HRQEFVATIGGVDYINDSKGTNTD---AAITALNAMTKP---- 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I + G     G   Q  +  + + L    +  + L G    A+ +A   +    YS   
Sbjct: 357 TILIAG-----GYDKQEDYTRMMQ-LVTVKVKKLLLIGDTAKAMAEAAEAAGFKDYSLVA 410

Query: 431 D--GLFLFIQSSLVDGDVVVV 449
           D        +++   GD V++
Sbjct: 411 DYPEAVAKAKAAAAPGDAVLL 431


>gi|239987056|ref|ZP_04707720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 11379]
          Length = 475

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 112/385 (29%), Gaps = 42/385 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV+G  +    L         +  A  +A+TG+ GKTTT  ML   L +    
Sbjct: 89  AAAEAGVPVWGDVE----LAWRLRGDNGKKAAPWLAVTGTNGKTTTVRMLASILEAAGLR 144

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A +G+    +   +       + D    EL    L         +R H A +  +AP H
Sbjct: 145 TAAVGNIGVSLLDAV---LGETEYDVLAVELSSYQL----HWAPSLRAHSAAVLNLAPDH 197

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +E  A+ K  ++EG   T     N  D   E L  ++          F      
Sbjct: 198 LDWHGSMEAYAADKGRVYEG--NTVACVYNVADPATEDLVREADVEEGCRAIGFTLGAPG 255

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             QL                Q ++ E            H   N L    +      +   
Sbjct: 256 PSQLGVVDGILVDRAFVANRQKQAQELAEVTDVDPPAPHNIANALAAAALARAFGVEPAA 315

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L  F        R     + G    +D+S   N  + +A+++             I
Sbjct: 316 VRDGLRAF---RPDAHRIEHVADIGEVAYVDDSKATNTHATEASLASYDS---------I 363

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD- 431
             +      G       I  A+ L       V L G     + +AL R         +D 
Sbjct: 364 VWIAGGLAKGATFDELVIGAAKRLR-----GVVLMGADRALIHEALTRHAPEVPVVDLDR 418

Query: 432 -------GLFLFIQSSLVDGDVVVV 449
                              GD V++
Sbjct: 419 TDTGAMSEAVARAAELARPGDTVLL 443


>gi|218296768|ref|ZP_03497474.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermus aquaticus
           Y51MC23]
 gi|218242857|gb|EED09391.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermus aquaticus
           Y51MC23]
          Length = 418

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 24/233 (10%)

Query: 57  ILHAVQKG----AGLVVVNTDMVASIG-SLSIPVFGVDDVLGAL--NKLAVAARLRSKAT 109
           +  A+  G      L     ++VA+ G  L+ P        GAL   +  +A RL     
Sbjct: 37  VAQALALGFTPDWQLAGAYREVVAAPGVPLAHPKLEALAARGALVMGEAELAYRLSPTP- 95

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           II ITG+ GKT+T       L          G+ +        L  +  + +  + EL  
Sbjct: 96  IIGITGTAGKTSTTLFTAHLLRGQGLRALEGGNVDPP------LVSVVDEAEVAVAELSS 149

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I       RP +AV+  +   HL     +E   +AK  + + L     +  N  D
Sbjct: 150 FQLERIHRF----RPRVAVLLNLGVDHLDRHGSLEAYHAAKLNLLKNLTPEDALVYNEAD 205

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +++ A      ++ G S     +    K   E +   + L G+ ++
Sbjct: 206 PKVREAASRTPARPYP--FTPGNSP----RESNLKAALEATRAYLDLLGRPLD 252


>gi|33593931|ref|NP_881575.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis Tohama
           I]
 gi|33598427|ref|NP_886070.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella parapertussis
           12822]
 gi|33564005|emb|CAE43271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella pertussis Tohama I]
 gi|33574556|emb|CAE39203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella parapertussis]
 gi|332383350|gb|AEE68197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis CS]
          Length = 456

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 125/378 (33%), Gaps = 45/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             A ++A+ G+ GKTTT  ML   L  + ++    IG     + V    AR        +
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVS---ARYAPGARPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +   G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQ 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           + L  D    E +  +        +  FG      +Q        EQ   EV + G+   
Sbjct: 218 LVLPTDAPALERVLERG---CWTPVARFG--PGGQWQA---GPADEQGAFEVSVDGRDAG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H  +N L  L             I+ALS F   +   +R           +
Sbjct: 270 TVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVK---RRMELRGTVNGIRV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLS 397
            D+ +  +P ++   I  L      G  R +AVL      M  +G ++      LA    
Sbjct: 327 YDD-FAHHPTAIATTIEGLR--RQVGAARILAVLEPRSNTMK-LGTMAARLPEALA---- 378

Query: 398 LYNISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 V+  G H           +   P        + +  L   + ++   GD V+V 
Sbjct: 379 --GADLVFCFGDHAGKHALGWDPARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVM 436

Query: 451 SSNSCGF----YRLINLL 464
            SN  GF     +L++ L
Sbjct: 437 -SNG-GFGGVHGKLLDAL 452


>gi|239940572|ref|ZP_04692509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 15998]
 gi|291444007|ref|ZP_06583397.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346954|gb|EFE73858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 472

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 112/385 (29%), Gaps = 42/385 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV+G  +    L         +  A  +A+TG+ GKTTT  ML   L +    
Sbjct: 86  AAAEAGVPVWGDVE----LAWRLRGDNGKKAAPWLAVTGTNGKTTTVRMLASILEAAGLR 141

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A +G+    +   +       + D    EL    L         +R H A +  +AP H
Sbjct: 142 TAAVGNIGVSLLDAV---LGETEYDVLAVELSSYQL----HWAPSLRAHSAAVLNLAPDH 194

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +E  A+ K  ++EG   T     N  D   E L  ++          F      
Sbjct: 195 LDWHGSMEAYAADKGRVYEG--NTVACVYNVADPATEDLVREADVEEGCRAIGFTLGAPG 252

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             QL                Q ++ E            H   N L    +      +   
Sbjct: 253 PSQLGVVDGILVDRAFVANRQKQAQELAEVTDVDPPAPHNIANALAAAALARAFGVEPAA 312

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L  F        R     + G    +D+S   N  + +A+++             I
Sbjct: 313 VRDGLRAF---RPDAHRIEHVADIGEVAYVDDSKATNTHATEASLASYDS---------I 360

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD- 431
             +      G       I  A+ L       V L G     + +AL R         +D 
Sbjct: 361 VWIAGGLAKGATFDELVIGAAKRLR-----GVVLMGADRALIHEALTRHAPEVPVVDLDR 415

Query: 432 -------GLFLFIQSSLVDGDVVVV 449
                              GD V++
Sbjct: 416 TDTGAMSEAVARAAELARPGDTVLL 440


>gi|317064995|ref|ZP_07929480.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690671|gb|EFS27506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 394

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 119/337 (35%), Gaps = 38/337 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K+ IIA+TG+ GKTTT   +T  L          G+          L     D+D+ + 
Sbjct: 48  IKSKIIAVTGTNGKTTTTSKITELLQYAGYKAEYAGNIGVSY---AELLLKYQDLDYIVL 104

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +       +P I ++  + P HLS +  I++    K  I +   +      
Sbjct: 105 ELSSYQLENL----LDFKPWITMVINLTPDHLSRYKDIDDYYKTKFNIGKNQTEDDYFIF 160

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-V 284
           N D    E+++ ++  LG K   S   S+  DF     K   +         G+ +E   
Sbjct: 161 NLDSK--EVVEREALVLGKKIKISQNISEKCDFWAENGKLYGK--------DGEILECSK 210

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L       I+    +   + L      E    R     + G    I++
Sbjct: 211 LSLKGKHNLENVLFITATAEIVGISNEKIREFLYNTETIE---HRMEDFFDYGKVKFIND 267

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K A+    Q         I + G   +  +      + LA+++ + +    
Sbjct: 268 SKGTNIDSTKFAVEAFDQC--------ILICGGFDKKLDW-----VPLADLIKI-HAKET 313

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           +L G     +   L       Y  +   L   ++S L
Sbjct: 314 YLIGETAEDINRILLEKG---YDSSKIFLLRDLRSCL 347


>gi|332527089|ref|ZP_08403169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111520|gb|EGJ11502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rubrivivax
           benzoatilyticus JA2]
          Length = 499

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 150/458 (32%), Gaps = 64/458 (13%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA---GLVVVNTDMVASIGSLSIPVFG 87
             DSR   P     A    H  G + +  A+ + A      V+ +  +A   +    V  
Sbjct: 33  VWDSRENPPG---VAALREHCPGAELLSGALPREAVEGAARVLKSPGLAPHDARIAAVLQ 89

Query: 88  VDDVLG----------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                G          A    A+ A       +IAITG+ GKTTT  +  + +    ++ 
Sbjct: 90  EARFRGLPVQGELDLFAEALAALKAERGYAPQVIAITGTNGKTTTTTLTGLLVERAGRSV 149

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+    +   L  AR+    +  + EL    L           P  A +  +   HL
Sbjct: 150 VLAGNIGPTMLDTL-AARLDELPEVWVLELSSFQLDG----VSGFEPAAAAVLNVTQDHL 204

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KAKSHALGIKTIYSFG 251
                +E  A+AKA +F    +   + +N DD   E +          +    +++  FG
Sbjct: 205 DWHGSMEAYAAAKARVF---GRDAVMVINRDDPLVEAMVPPPPPAKGRNKPVGRSVQRFG 261

Query: 252 KSKNADFQLRKWKQCSEQSWM--------------------EVQLQGKSMEVVHHGIGYH 291
              +A  +   W    E                        E+ LQ           G H
Sbjct: 262 L--DAPRRPGDWGLVVENGMAWLVRALPADETVKLRRDEDHEIHLQRLMPADALRIRGRH 319

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N L  L + + +   + + +          G   R +   N G     D+S   N  
Sbjct: 320 NAANALAALALATAIGCPLSSLLHG---LRDYAGEPHRVQWIGNVGEVEAFDDSKGTNVG 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  AA+  L   +     R + +LG   +  + +      LA  L+ +    V   G   
Sbjct: 377 ATVAALDGLG--ADKAPARLVVILGGDGKGQDFAP-----LAAPLARW-ARAVATIGRDA 428

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            A++  +   +   ++ T++    +       GD V++
Sbjct: 429 PAIEPHVRGPVLARHA-TLEAAVAWCFEQAQPGDAVLL 465


>gi|311103841|ref|YP_003976694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758530|gb|ADP13979.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 456

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 123/380 (32%), Gaps = 43/380 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++A+ G+ GKTTT  ML   L +        IG     + V    AR        +
Sbjct: 101 PGQHVLAVAGTHGKTTTSSMLAWVLEAAGMAPNFLIGGVAQDLHVS---ARFDPSRRPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +  +G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPGSGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I      +  + + A+          +FG    AD   +     +E ++  ++    +  
Sbjct: 218 IVRPAHCAALDRVIARG---CWSETVTFG----ADGAWQATAPDAEGAFSVLRGGVTAGT 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N L  L     +       I AL+ F   +   +R           + 
Sbjct: 271 VRWNLSGEHNRMNALAALAAAEHVGVPAAQGIDALTRFAGVK---RRMELRGTVDGIKVY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSL 398
           D+ +  +P ++   +  L      G  R +AVL      M  +G ++      LA+    
Sbjct: 328 DD-FAHHPTAIATTLEGLR--RQVGAARILAVLEPRSNTMK-LGTMAARLPEALAD---- 379

Query: 399 YNISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                V+  G H               P        + +  L   +  +   GD V+V  
Sbjct: 380 --ADLVFCFGAHAGKHALGWNPAEVLAPLGDRASSYDDIGALVAAVAGAARPGDQVLVM- 436

Query: 452 SNSCGF----YRLINLLLEE 467
           SN  GF     +L++ L   
Sbjct: 437 SNG-GFGGVHGKLLDALQAR 455


>gi|119484349|ref|ZP_01618966.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
 gi|119457823|gb|EAW38946.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
          Length = 868

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 134/385 (34%), Gaps = 56/385 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------TL 153
            +  IIA+TG+ GKTTT  ++       K+      +   +IG  L             L
Sbjct: 486 YRVPIIAVTGTNGKTTTTRLIAHIFKQTKQVIGYTTTDGTYIGDFLLESGDNTGRQSAQL 545

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
                 V+  + E   +  G +R      R  + V+  +A  HL   + + +E++A  K 
Sbjct: 546 ILNDPTVEVAVLE--TARGGILRSGLGFNRCDVGVVLNVAADHLGLEDINTLEDMAQVKT 603

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS---- 267
            + E  +  G   LN DD     +           +  F  + +        ++      
Sbjct: 604 VVAEATDDKGYAVLNADDPLVADMAKWVKG----KVAYFSINPHNPIVQEHLRKGGIAAI 659

Query: 268 -EQSWMEVQLQGKS---------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +  ++     G+          +     G+   M  N+L       +    ++     L
Sbjct: 660 YDGDFLTF-CNGQDTLQVEQMVNVPSTLRGLVSFMIANVLAASLAAYVQGVSIENISTGL 718

Query: 318 SVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             F    E    R        F  LID  Y  NPA  KA    + Q S   EG RI V+G
Sbjct: 719 RTFQASLEHTPGRMNLIELGKFHVLID--YAHNPAGYKAIGEFVCQWS---EGERIGVIG 773

Query: 377 --------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYS 427
                   D+ E+G LS      +  ++   + +     G     +++ + +     +Y 
Sbjct: 774 GPGDRRDQDLKELGRLSTQMFDWV--IIKEDDNTRDRPRGEAASLIREGICQEKPQFNYQ 831

Query: 428 ETMDGLFLFIQSSLV---DGDVVVV 449
           E  D     IQS+L    +G +VV+
Sbjct: 832 EIWDE-TEAIQSALASASEGSLVVI 855


>gi|15599215|ref|NP_252709.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PAO1]
 gi|218889699|ref|YP_002438563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa LESB58]
 gi|254242704|ref|ZP_04936026.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 2192]
 gi|296387427|ref|ZP_06876926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PAb1]
 gi|313109462|ref|ZP_07795421.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 39016]
 gi|9950213|gb|AAG07407.1|AE004818_13 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PAO1]
 gi|126196082|gb|EAZ60145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 2192]
 gi|218769922|emb|CAW25683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa LESB58]
 gi|310881923|gb|EFQ40517.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 39016]
          Length = 451

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 130/407 (31%), Gaps = 46/407 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +   +  +S P +  D VL                 ++A+ G+
Sbjct: 67  IGNALSRGNPAV--EHVLNKGLPYVSGPQWLADHVLQ-------------GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  ML   L     +    IG    + GV   L   P    F + E         
Sbjct: 112 HGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTP----FFVVEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP  A++  +   H   F  +  I      +   +   G I     +   E
Sbjct: 168 DKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGLIIRPSAEKALE 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292
            +        ++T       +   +Q R   +  + S  EV   G    EV     G H 
Sbjct: 228 RVLGMGCWTPVQT-----TGEGGQWQARLLAE--DGSRFEVLFDGIVQGEVDWPLTGLHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L +L     +         ALS F   +   +R          TL D+ +  +P +
Sbjct: 281 VANALASLAAARHVGVMPSQGAAALSEFRNVK---RRMEKVAEVRGVTLYDD-FAHHPTA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGF- 409
           +   +  L +     + + IA++    E    S     H D     S+     V      
Sbjct: 337 IATTLDGLRK-QVGADTQVIAIV----EPRSNSMKLGAHRD-GLPDSVRQADQVLWYAPP 390

Query: 410 --HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                    A   +I     +T++ +   ++     G  VV+  SN 
Sbjct: 391 NLGWDLAATAAQCAIPSQVCDTLEAIIEQVRQQARPGAQVVIM-SNG 436


>gi|114327095|ref|YP_744252.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315269|gb|ABI61329.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 462

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 120/364 (32%), Gaps = 37/364 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV    ++L    +L+      S+A  + ITG+ GK+TT  +    L       A  G+
Sbjct: 93  VPVLSDAELLYQAVRLSG-----SRARFVGITGTNGKSTTTALTAHILREAGCPVAAGGN 147

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                        +  D    + E+    L  ++ L    R   A +  ++P H+     
Sbjct: 148 LGPAALALP----LLPDNGVYVLEMSSYMLERLQTL----RFDAAAMLNLSPDHIDRHGD 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLR 261
           +    +AK EIF+         +  DD     +       G    I     +   D Q  
Sbjct: 200 MAGYETAKREIFQRQTGADLAVIGIDDPLSAAMAETLRKDGHPARIALVSGALCGDTQAE 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              Q    +  ++Q     M       G H AQN  +   I   L    +     ++ F 
Sbjct: 260 YGMQF--GTLTDMQGPILPMVQAAALPGAHNAQNAAVAAAITLFLGVKREQVAAGVASFP 317

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R +R            I++S   N  S   A+             RI  +      
Sbjct: 318 GLPHRQERI---AEADGILWINDSKATNADSTARAL---------ICHERILWIAG---- 361

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQS 439
           G   +    DLA +L    ++H  L G     L + L R+  V +++  T+D       +
Sbjct: 362 GIAKEGGIEDLAPLLPR--VTHALLIGRDAPILAETL-RAHGVPHTDAGTLDNAVTMAAA 418

Query: 440 SLVD 443
            + +
Sbjct: 419 LVKE 422


>gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
 gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
          Length = 510

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 121/387 (31%), Gaps = 55/387 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A     +A     +  ++ +TG+ GKTT   +    + +   +    G+ +      L
Sbjct: 115 LFARALADLAETREYRPRLLTVTGTNGKTTVTALTRQLIEASGLSVVAAGNISPAALAAL 174

Query: 152 TLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A     +    + EL    L      TH +     V+  +   HL     +E  A AK
Sbjct: 175 MDALDAESLPQVWVLELSSFQL----ETTHSLMADAGVVLNVTQDHLDWHGSMEAYAQAK 230

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS----------------- 253
           A +   L+      +N DD +   + A  +AL ++   SFG+                  
Sbjct: 231 ARL---LKMARVAIVNRDDPYTVDMVATLNALNVR---SFGRDVPELVGDMGLELGQGVA 284

Query: 254 -----KNADFQ-----LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +  DF      +R+ K   E    + ++            G H A N L  L + 
Sbjct: 285 WLVACEPNDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLA 344

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       ++A        G   R       G    I++S   N  +  AA+  L Q 
Sbjct: 345 RCLDLGWGAMLRA---LREYAGEPHRAAFVRTIGGVDYINDSKGTNVGATVAALEGLGQ- 400

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                 + + + G   +  + +              +   V L G     +   L    +
Sbjct: 401 ------QVVLIAGGQGKGQDFAP------LIPGVTQHARAVMLIGQDGPEIGRVLASTGV 448

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +ET+             GD V++
Sbjct: 449 QCVMAETLRDAVRGAAELAQPGDAVLL 475


>gi|163855000|ref|YP_001629298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           petrii DSM 12804]
 gi|163258728|emb|CAP41027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bordetella petrii]
          Length = 509

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 124/423 (29%), Gaps = 68/423 (16%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
             D +  A  +G  +V                       L A     +A     +  ++ 
Sbjct: 95  ARDLLEQAAARGVEVVGEIE-------------------LFARALAELAESRDYRPRLLT 135

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSH 171
           +TG+ GKTT   +    + +   T    G+        L  A    D+    + EL    
Sbjct: 136 VTGTNGKTTVTALTRQLVEAGGMTVRAAGNIGPAALAALIDALDADDLPQVWVLELSSFQ 195

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L      T  +    AV+  +   HL    G++  A AKA +   L+      +N DD  
Sbjct: 196 L----ETTRSLMADAAVVLNVTQDHLDWHGGMDAYAQAKARL---LKMARVSIVNRDDPR 248

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------------K 279
              +     A+ ++   SFG+           +     +W+                  K
Sbjct: 249 VAGMVEALPAMDVR---SFGRDLPELVGDMGLELGQGMAWLVACEPNDFDEPAPPARRKK 305

Query: 280 SMEVVHHGIGYHMAQNMLMTLGI----------VSILTADVDTAIKALSVFHPKEGRGKR 329
                  G G       L  L I           ++  A V        +   +E  G+ 
Sbjct: 306 DAPPPRRGAGRISRLMPLDALRIRGQHNGLNALAALQLARVLNIGWGPMLRALREYTGEP 365

Query: 330 YRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +R    +  G    I++S   N  +  AA+  L Q         + + G + +  + S  
Sbjct: 366 HRAEFVRTIGEVDYINDSKGTNVGATVAALEGLGQ-------PVVLIAGGLGKGQDFSP- 417

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
                   +   +   V L G     +   L    +    ++ M             GD 
Sbjct: 418 -----LAPVVTRHARAVVLIGTDGPEIGRVLADTGVPCVAAQDMRDAVRRGAELAQPGDA 472

Query: 447 VVV 449
           V++
Sbjct: 473 VLL 475


>gi|257086352|ref|ZP_05580713.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|256994382|gb|EEU81684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|315026969|gb|EFT38901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2137]
          Length = 456

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 97/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLIGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L  F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|149927130|ref|ZP_01915387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
 gi|149824069|gb|EDM83290.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
          Length = 495

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 132/390 (33%), Gaps = 63/390 (16%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D L AL +         +  ++ ITG+ GKTTT  M+        K     G+ +    
Sbjct: 105 ADALDALQQ-----EKNYQPQVVGITGTNGKTTTTRMVECLTQFAGKKAVAAGNISPAAL 159

Query: 149 VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
             L       D+ D  + EL    L      T  ++   + +  I   HL     ++E A
Sbjct: 160 DALREQLEVGDLPDIWVLELSSFQL----HWTKRLKFDASTVLNITQDHLDWHPDMQEYA 215

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  IF    + G   +N DD+    L   ++      + +FG S  A  Q+  +    
Sbjct: 216 QDKFRIFS---ENGVCVINRDDA----LVLDANLPAGTRVSTFGTSAPA--QVDDFGLIR 266

Query: 268 EQSWMEV------------------QLQGKSMEVV---------HHGIGYHMAQNMLMTL 300
           E   + +                  + + + +E              +G H A N L  L
Sbjct: 267 EGGMLWLAQLVGDQEKSQETPISTRRRKQEEVEPRQKLLMPIEALQVVGLHNASNALAAL 326

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   +   +         +G   R +  +        D+S   N  +  AA++ L
Sbjct: 327 ALCQGLGLPMAKLLHG---LRSYQGEPHRVQHVVQIDGVDYFDDSKGTNVGATVAALNGL 383

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++         + + G   +  + S      L + +S Y   HV L G     +  AL  
Sbjct: 384 AK-------PTVLIAGGDGKGQDFSP-----LVQPVSNY-CKHVVLIGKDADNMMSALAL 430

Query: 421 S-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +    + T++       S   +GD V++
Sbjct: 431 AQVPCEKAATLEQAVQVAASKAREGDCVLL 460


>gi|332686272|ref|YP_004456046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
 gi|332370281|dbj|BAK21237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
          Length = 455

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 116/359 (32%), Gaps = 51/359 (14%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L + ++      + N              D D  + EL    L           P
Sbjct: 128 MIQQILDAGRQQGKARLAGNIGYPASEITQHATKD-DLLVMELSSFQLLG----VSSFYP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I  AHL      E   SAK +I + +E+   + +N++      +   + A   
Sbjct: 183 TMAVITNIYEAHLDYHKTRENYVSAKWQIQQNMEQEDQLIINWNQPELREMVKTTRA--- 239

Query: 245 KTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            T+  F   +  N  + L +     ++  M V              G H  +N L  + +
Sbjct: 240 -TVVPFSTYEVVNGAYLLNETLYFKDEIIMSVD--------ELGVPGNHNIENALAAICV 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     ++  + L  F     R +       + F+   ++S   N  + K A+S    
Sbjct: 291 AKLYNIANESIRETLHRFSGVAHRTQYIDTIKQRKFY---NDSKATNILATKMALSGFPS 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                    + +L    + G            +  L ++  + L G     L+  + ++ 
Sbjct: 348 NQ-------LILLAGGLDRGNDFDEL------IPVLKDLKGIVLFGETKEKLRK-IAKNA 393

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVVV---KSS---------NSCGFYRLINLLLE 466
            V   +T   +   ++ +       D +++    +S             F + +  L E
Sbjct: 394 GVLIIKTAANMTDAVREAFEISQKNDTILLSPACASWDQYPNFEIRGEAFIKAVEQLKE 452


>gi|254236911|ref|ZP_04930234.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa C3719]
 gi|126168842|gb|EAZ54353.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa C3719]
          Length = 451

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 130/407 (31%), Gaps = 46/407 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +   +  +S P +  D VL                 ++A+ G+
Sbjct: 67  IGNALSRGNPAV--EHVLNKGLPYVSGPQWLADHVLQ-------------GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  ML   L     +    IG    + GV   L   P    F + E         
Sbjct: 112 HGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTP----FFVVEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP  A++  +   H   F  +  I      +   +   G I     +   E
Sbjct: 168 DKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGLIIRPSAEKALE 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292
            +        ++T       +   +Q R   +  + S  EV   G    EV     G H 
Sbjct: 228 RVLGMGCWTPVQT-----TGEGGQWQARLLAE--DGSRFEVLFDGIVQGEVDWPLTGLHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L +L     +         ALS F   +   +R          TL D+ +  +P +
Sbjct: 281 VANALASLAAARHVGVVPSQGAVALSEFRNVK---RRMEKVAEVRGVTLYDD-FAHHPTA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGF- 409
           +   +  L +     + + IA++    E    S     H D     S+     V      
Sbjct: 337 IATTLDGLRK-QVGADTQVIAIV----EPRSNSMKLGAHRD-GLPDSVRQADQVLWYAPP 390

Query: 410 --HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                    A   +I     +T++ +   ++     G  VV+  SN 
Sbjct: 391 NLGWDLAATAAQCAIPSQVCDTLEAIIEQVRQQARPGAQVVIM-SNG 436


>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 133/399 (33%), Gaps = 33/399 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           K A +VVV+  +      LS  +     VL  L+    A  L     I+A+TG+ GK+T 
Sbjct: 74  KDADMVVVSPGVPLESHGLSFLLQSGKRVLSELD--FAAEILPRSIKILAVTGTNGKSTV 131

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP----LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                  LS +       G+    +       LT           + E+    L      
Sbjct: 132 ATFSGQMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQL---EVP 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKA 237
                P +AV+  +   HL     ++  A  K  +   +  +    L + +    E ++ 
Sbjct: 189 NKHFCPSVAVVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEE 248

Query: 238 KSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             + + +  I +F G   + + ++   +  +     E++L         + +G H   N 
Sbjct: 249 LVNEVNLAWIGAFPGVKVDKEEKVASLRVPAIGVVSELKLG------ALNVMGTHNYYNA 302

Query: 297 LMTLG--IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            +     +   +  D +     +        R +           T ID+S   N  +  
Sbjct: 303 AVAALSVLGLDMGIDTEAISSTIEKLRVPPHRMQIVHKDSY--GVTWIDDSKATNVEATY 360

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLA 413
             +  L +       + + +LG + ++    +S     L E L  +    V   GF    
Sbjct: 361 TGLLGLKEQ------KSVILLGGLAKVSNSQESNGFEQLVEPLKYHRC--VITFGFSGPL 412

Query: 414 LKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  L     SI    +  ++      +S    GD VV+
Sbjct: 413 IQKTLSDDGLSIPCFEAANLEDAVNCARSVARYGDAVVL 451


>gi|254513897|ref|ZP_05125958.1| mur ligase family protein [gamma proteobacterium NOR5-3]
 gi|219676140|gb|EED32505.1| mur ligase family protein [gamma proteobacterium NOR5-3]
          Length = 566

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 127/391 (32%), Gaps = 59/391 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP---- 157
            R         ITG+ GKTTT  +L     +  +      +    +G  L L R      
Sbjct: 167 WRRLKAVPTALITGTNGKTTTVRLLASIARAAGRVAGVSSTDWLAMGDEL-LHRDDYAGP 225

Query: 158 -------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIAS 208
                   D    +  L  +  G +R    + R  +AVIT IA  HL +F    +E++A 
Sbjct: 226 GGARIVLRDQRCELALLETARGGMLRRGLAVERADVAVITNIAADHLGDFGVETVEDLAD 285

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K  +   L+K   + LN +D         S A        F  S  A     K      
Sbjct: 286 VKWSVSAALDKKSCLVLNAEDPLLMRRAPGSPAPLCL----FSLSPTAP--AFKAHLARG 339

Query: 269 QSWMEVQ---------------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                V+               L  K M + + G+  H   N L    +   L  ++   
Sbjct: 340 GRGFTVRRGRLERIHAGKVEGFLSVKKMPLSYDGVARHNIANALAAAAVADALGIELSVI 399

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L     ++  G+        G  T + + +  NPA ++A + ++  +      RR  
Sbjct: 400 AKGLCALGNEDNPGRA--NLYTVGGATFLVD-FAHNPAGLEALMPMIEGLPAK---RRAL 453

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLALKDALPRSI 422
           + G     G+         A+  S  +   +WL            G     ++DA     
Sbjct: 454 ITGQ---AGDRGDEDIRAFADASSSIHFDRIWLKRMDGHARGRAEGEVAALMRDAFIAQG 510

Query: 423 HVHY----SETMDGLFLFIQSSLVDGDVVVV 449
           H       S+T           +  GD+VV+
Sbjct: 511 HAAKSISLSKTELDATRAALRWVKPGDLVVL 541


>gi|212635040|ref|YP_002311565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           piezotolerans WP3]
 gi|212556524|gb|ACJ28978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Shewanella
           piezotolerans WP3]
          Length = 422

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 146/434 (33%), Gaps = 57/434 (13%)

Query: 24  QGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVV-----VNTDMVA 76
              +  + +DSR   P       A          F    + +   +V+     V T  V 
Sbjct: 9   DQGITPLVMDSREQPPGADKLAAAYPDVELIAGGFDCRYLVQATQIVISPGISVETPEVR 68

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +   + I V G  DV     +L   A   S A +I ITGS GK+T   ++    ++   +
Sbjct: 69  AAFDMGIEVIG--DV-----ELFARAIANSPARVIGITGSNGKSTVTTLVGEMAAAAGLS 121

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           Y   G+    +     L  +    +  + EL    L      TH +    A    I+  H
Sbjct: 122 YTLGGNIGIPV-----LDLLLNPKELYVLELSSFQL----ETTHSLNCIAATCLNISEDH 172

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KN 255
           +  ++ +E    AK  +++    + ++  N +D     L    ++   +   SFG     
Sbjct: 173 MDRYNDLESYRQAKLNLYDQ---SKSVLFNRED-----LLTLPNSPMNQN--SFGLDAPE 222

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            D            S + + +           +G H   N++  + + S +    +  ++
Sbjct: 223 VDAWGGAEGNIVRGSSVIMPI------SEVALVGSHNHANLIAAMALASSVDIGREYLVE 276

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
               F    G   R     +    T +++S   N  +  AAI  LS+      G  I + 
Sbjct: 277 VAKQFT---GLTHRCEVVADIAGVTYVNDSKATNVGATVAAIEGLSE----HLGELILIA 329

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G   +  + +       A   +L  +S V   G     +      S  V   +TM     
Sbjct: 330 GGDGKGADFT-------ALATALERVSSVITLGKDGDKIAALKEGSQSV---KTMAEAVA 379

Query: 436 FIQSSLVDGDVVVV 449
                   GD+V++
Sbjct: 380 LANEISTAGDIVIL 393


>gi|217076584|ref|YP_002334300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
 gi|226722950|sp|B7IFU5|MURD_THEAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|217036437|gb|ACJ74959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
          Length = 423

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 114/342 (33%), Gaps = 55/342 (16%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IA+TGSVGK+TT  M+   L+  K+T    G+    I     L    +  D+ + E+
Sbjct: 105 PYVIAVTGSVGKSTTVSMIQHVLNKYKRTL-LAGNIGIPI---AKLLNDDLRADYLVLEV 160

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L    F +   +P+I+ I  I P HL+    +    ++K +I    ++      N 
Sbjct: 161 SSFQL----FWSDKFKPNISSILNIYPNHLNWHPEMSHYINSKFKITLSQDENDFFVYNP 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D +      K  A  +                              +   +  ++  H 
Sbjct: 217 NDEYIVKNLGKVKAKKVP----------------------------FKYDFEIHQLPEHL 248

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 +N+     IV +     +  I  L  F        R             ++S  
Sbjct: 249 RYKQTIENVAAAKTIVEVAG--FEFNIDFLEDFEKLP---HRMEYVTEINGVKFFNDSKA 303

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N A++  A+          +G+   +   M  +G+        L   +   ++  V L 
Sbjct: 304 TNAAAVIRAVENF-------DGKLHLI---MAGIGKNED---YTLLRKVLKNSVKTVALV 350

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     +K  L   I+     +++     +      GDV+++
Sbjct: 351 GPIAKDVKPYL-DGINFMECSSINEAVNQLFRIANPGDVIML 391


>gi|225351418|ref|ZP_03742441.1| hypothetical protein BIFPSEUDO_03013 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157762|gb|EEG71045.1| hypothetical protein BIFPSEUDO_03013 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 521

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 108/302 (35%), Gaps = 36/302 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KTYACIGSYNNHIGV 149
           ++  + + L +    + + G+ GKTTT  ML   L+          +YA  GS     GV
Sbjct: 117 HRSDILSLLMNTKRAVTVAGAHGKTTTSSMLAHILTHAGEGNLADPSYAIGGSIQGKDGV 176

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L         D  + E   S     ++      P IA++T     HL ++   E   +A
Sbjct: 177 ILDGGHAGQG-DVLVAEADESDGSFAKY-----HPEIAIVTNSEADHLDHYGTQENYRAA 230

Query: 210 KAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIY-------SFGKSKNADFQLR 261
                       ++ +  DD     +L+A   +    T+        S G    A F   
Sbjct: 231 FVN--HVQHAIKSVVMCGDDEGNLAVLRALDASAAAHTVVYATQDAASLGDLNGAAFVHI 288

Query: 262 KWKQCSEQS---WMEVQLQGKSM-------EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           + +  S QS      + +    +        V     G H A+N    +   ++L  D++
Sbjct: 289 ESESESAQSGAEHFTLHVPAGLLGEQERMVPVTLAVPGIHNARNASAAIIAAALLGVDIE 348

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A +A + F    G  +R++        T++D+ Y  +P  + A +    +  P    R 
Sbjct: 349 KAAEAATSFL---GAARRFQVRGTVSQVTVVDD-YAHHPTEISALLDAARRKYPQSAIRV 404

Query: 372 IA 373
           I 
Sbjct: 405 IF 406


>gi|162148959|ref|YP_001603420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545288|ref|YP_002277517.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787536|emb|CAP57132.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532965|gb|ACI52902.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 465

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 110/351 (31%), Gaps = 38/351 (10%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
               +     +  +P+    ++L          R  S+A    ITG+ GK+TT  +L   
Sbjct: 85  HPHPVARMAHAAGVPILSDANLL-----FQAVRRSGSRARFAGITGTNGKSTTTTLLAHM 139

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L +     A  G+             +  D    + E+    L  +R L    R   A +
Sbjct: 140 LHTAGLPVAAGGNLGPAALALP----LLPDTGVYVLEMSSYMLERLRDL----RFDAACL 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIY 248
             + P HL     +     AK  +F+         L  YD      L     A GI+ + 
Sbjct: 192 LNLTPDHLDRHGDMAGYRRAKQHVFDRQGPGDLAVLGQYDAPDDAALARDLAARGIRVVT 251

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G   +A          +     +      ++       G H A+N      +   L  
Sbjct: 252 ISGTRADAGLT------GAGGVLRDADGPIATLADAPSLPGAHNAENAAAAAAMALALGV 305

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
              T   AL  F    G   R +          ID+S   N  +   A+           
Sbjct: 306 PRATIAGALRTF---PGLAHRQKPVGTVDGVRFIDDSKATNADAASRAL--------GCY 354

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            R + + G + + G ++     DLA       ++H +L G    AL + L 
Sbjct: 355 DRLVWIAGGVAKAGGIA-----DLAPFFPR--VAHAFLIGQDAPALAETLA 398


>gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
 gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
          Length = 546

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 136/433 (31%), Gaps = 49/433 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+++       +     + ++ DSR+I         KG  +    ++  A   G    V 
Sbjct: 37  LESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYLDQADALGLPCYVA 93

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D  ++  +L I V  V   L AL   A      S+  ++ ITG+ GKTTT       L
Sbjct: 94  QEDFSSATKALGIIVTDVRQAL-ALLSAAFYGDPASQLKVVGITGTKGKTTTAYFTHAIL 152

Query: 131 SSI-KKTYACIGSY------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           S+      A + S             N      L L RM         E  +  +    +
Sbjct: 153 SAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMMRQAVDAGMEYLVMEVSSQAY 212

Query: 178 ---LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                  +R  +     I+P H+S       E+    K +I      +  + +N   +  
Sbjct: 213 KVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQIAAN---SDNLVMNATMAHA 269

Query: 233 ELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--------------- 276
            L+   + A G   + +   + ++      + +     S   V                 
Sbjct: 270 SLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTVTASPLDPDPTLGFRISD 329

Query: 277 -QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT--AIKALSVFHPKEGRGKRYRCA 333
            QG S +      G     N    + IV  L  D+      +AL         G+    +
Sbjct: 330 GQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQALEAMEKVTISGRMETFS 389

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             QG   ++D  Y  N  S  A +  + +     + R I V G     G  +     ++ 
Sbjct: 390 SPQGSLAVVD--YAHNGVSTTALLDYVDKAYGKMDPRIILVTGS---AGNKAYDRRQEIV 444

Query: 394 EVLSLYNISHVWL 406
           +         ++ 
Sbjct: 445 QAAQDRIARFIFT 457


>gi|254253336|ref|ZP_04946654.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Burkholderia dolosa
           AUO158]
 gi|124895945|gb|EAY69825.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Burkholderia dolosa
           AUO158]
          Length = 508

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 141/464 (30%), Gaps = 78/464 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFI----LHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           D+R   P     A++    D  +F+      A+  G   +V  +  ++ +      +   
Sbjct: 41  DTRDAPPN--LAALQAEGIDA-EFVGGPFAPALLDGGVEIVGLSPGLSPLEPELAALIAA 97

Query: 89  DDVLG---------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +  G             L        +  ++AITG+ GKTTT  +  +      +  A 
Sbjct: 98  ANERGIAVWGELEFFAQALRSLGTSGYQPKVLAITGTNGKTTTTSLAGLLCRRAGRKVAV 157

Query: 140 IGSYNNHIGVPLTLARMPVDVDF------GIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            G+       P  L R+   +D        + EL    L           P  A I  I 
Sbjct: 158 AGNI-----SPAMLDRLAAAIDDTALPDVWVLELSSFQL----ETARTFAPDAAAILNIT 208

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL      +  A+AK  IF       T  LN DD+        + A       +FG +
Sbjct: 209 QDHLDWHGSFDAYAAAKGRIFGATT---TRVLNRDDAAVMKFAPAAGAADAPRTITFGLN 265

Query: 254 K---NADFQLRK-----------WKQCSEQSWMEVQLQGKSMEVV-------------HH 286
           +   + D+ L +            +   +++    + + +                    
Sbjct: 266 EPTQDGDYGLSRDNGIAWLVEAVDRDAPDEAATTTRRRKRDAAHTPDIALKRLMPADALR 325

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L    +   +       + A        G   R            +D+S 
Sbjct: 326 IRGLHNAANALSAFALARAIDLPAAPLLHA---LREYRGEAHRVEVIATIEDVDYVDDSK 382

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA+  L+Q       + + + G   +  + +      +A          V L
Sbjct: 383 GTNVGATVAALDGLAQ-------KTVLIAGGDGKGQDFAP-LVAPVARWCRA-----VML 429

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G    A++  L    + +    T++       +    GD V++
Sbjct: 430 IGRDAPAIRATLAETGVPLVDHPTLEDAVRAAAALAEPGDAVLL 473


>gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
 gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
          Length = 465

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 127/387 (32%), Gaps = 43/387 (11%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134
                 + V   +  +  + ++ +A RLR    A  +A+TG+ GKTT   MLT  L++  
Sbjct: 70  WPPHHPLLVAAAEAGVEVIGEVELAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAAG 129

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                +G+    +   +T        D    EL    L      +  + PH A +  +AP
Sbjct: 130 HAALAVGNVGTPVVEAVT-----GPADVLAVELSSFQL----HRSPSLAPHTAAVLNVAP 180

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +EE A  K EIF    + GT+  N DD +   L A            F    
Sbjct: 181 DHLDWHGSLEEYARVKGEIF---TRAGTVVHNADDEWSARLAAPYDGGTGARSVGFTLGV 237

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADV 310
            A  Q+   +               + E            H   N L    +        
Sbjct: 238 PAPGQVGVVEDLLVDRAFVADPARHAEELASFDDIRPFAPHNVANALAAAAMARSYGVPA 297

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L  F P   R  R       G    +D+S   NP +  A+++    I       
Sbjct: 298 EAVRQGLLDFVPDPHRMARV---ARVGEVDYVDDSKATNPHAAAASLAAYPSIVWIAG-- 352

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHV 424
                      G+L  +   DL    +   +    L G     ++ AL R       + V
Sbjct: 353 -----------GQLKGADVDDLVRRAAPR-LRGAVLLGADRERIRQALARHAANVPVVEV 400

Query: 425 HYSET--MDGLFLFIQSSLVDGDVVVV 449
              +T  MD + +        GD V++
Sbjct: 401 AGQDTGVMDRVVIEAARLAAPGDTVLL 427


>gi|107103535|ref|ZP_01367453.1| hypothetical protein PaerPA_01004605 [Pseudomonas aeruginosa PACS2]
 gi|116054451|ref|YP_789099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589672|gb|ABJ15687.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 451

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 130/407 (31%), Gaps = 46/407 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +   +  +S P +  D VL                 ++A+ G+
Sbjct: 67  IGNALSRGNPAV--EHVLNKGLPYVSGPQWLADHVLQ-------------GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  ML   L     +    IG    + GV   L   P    F + E         
Sbjct: 112 HGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTP----FFVVEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP  A++  +   H   F  +  I      +   +   G I     +   E
Sbjct: 168 DKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGLIIRPSAEKALE 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292
            +        ++T       +   +Q R   +  + S  EV   G    EV     G H 
Sbjct: 228 RVLGMGCWTPVQT-----TGEGGQWQARLLAE--DGSRFEVLFDGIVQGEVDWPLTGLHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L +L     +         ALS F   +   +R          TL D+ +  +P +
Sbjct: 281 VANALASLAAARHVGVVPSQGAAALSEFRNVK---RRMEKVAEVRGVTLYDD-FAHHPTA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGF- 409
           +   +  L +     + + IA++    E    S     H D     S+     V      
Sbjct: 337 IATTLDGLRK-QVGADTQVIAIV----EPRSNSMKLGAHRD-GLPDSVRQADQVLWYAPP 390

Query: 410 --HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                    A   +I     +T++ +   ++     G  VV+  SN 
Sbjct: 391 NLGWDLAATAAQCAIPSQVCDTLEAIIEQVRQQARPGAQVVIM-SNG 436


>gi|148543823|ref|YP_001271193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           reuteri DSM 20016]
 gi|184153225|ref|YP_001841566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227364727|ref|ZP_03848776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|325682646|ref|ZP_08162163.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
 gi|167017288|sp|A5VJ32|MURD_LACRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711917|sp|B2G6K4|MURD_LACRJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148530857|gb|ABQ82856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri DSM 20016]
 gi|183224569|dbj|BAG25086.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227070186|gb|EEI08560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|324978485|gb|EGC15435.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
          Length = 456

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 120/350 (34%), Gaps = 42/350 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++++TGS GKTTT  +    + +    +    + N  I        +  D D  + 
Sbjct: 110 FDGHLVSVTGSNGKTTTTTLT-QLMIAENAKHQVKYAGNIGISFSKIAEDLGPD-DTLVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L         + PHIA+IT I   HL      E   +AK  I     K   + +
Sbjct: 168 ELSSFQLLG----APTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVI 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSM- 281
           N+D   ++ +  +S A    TI  F           +  +  E S++E   +  +G+ + 
Sbjct: 224 NWDRDEWQKIAQRSQA----TIVPFS----------RLNKSHEGSYVEDGMIYWRGQEVM 269

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  IG    +N L  +    +     D   K L+ F    G   R +  +      
Sbjct: 270 PTKDIRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFS---GVRHRLQYVMEYQERL 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + +  + + A+            R + +L    + G   +       + +    
Sbjct: 327 FYNDSKSTDIEATEVALQGFD--------RPVILLAGGLDRGYTFERLVPYFKKHVKAM- 377

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + G     +KDA  +  + V  SE               GDV+++
Sbjct: 378 ----IVFGECKDKMKDAGNQAGVPVVESENAITAVPEAWKLSEPGDVILL 423


>gi|303242183|ref|ZP_07328672.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
 gi|302590265|gb|EFL60024.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
          Length = 882

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 141/414 (34%), Gaps = 87/414 (21%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156
               I+++TG+ GKTTT  ++   L    KT     +   +IG    L         ARM
Sbjct: 478 HSIPIVSVTGTNGKTTTTRLIAHTLELQGKTVGMTTTSGIYIGDECILKGDNTGFVSARM 537

Query: 157 ---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
                 +D  + E   +  G +R         + VIT ++  HL        E++ASAK+
Sbjct: 538 LLSNKSIDAAVLE--TARGGLVRKGLGYDLADVGVITNVSEDHLGIDGVDTAEDLASAKS 595

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + E ++  G   +N DD F      ++ +     +  F K K++        Q     +
Sbjct: 596 LVIEAVKPKGYAVINADDGFARYFMDRAKS----KVILFSKDKHSSIMQDHISQGKRAVY 651

Query: 272 ME----------VQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA-IKAL 317
           ++          V +Q    K + +   GI     +N L  +  +  L   ++T     +
Sbjct: 652 LDGGEIFLVKKGVTIQLAKTKDIPITFGGILECNIENCLAAVSALWGLDMPLETIKAGLV 711

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S          R+       F  ++D  Y+ NPA  +  I  + ++  +   R + ++G 
Sbjct: 712 SFLPDTSSNPGRFNIFDMGEFKVMLD--YSHNPAGFEEVIKFVKKLEAN---RLVGIIGM 766

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHV---------------- 411
             +  + S       A  +       +++           G                   
Sbjct: 767 PGDRQDSSMCS----AAQICAAGFDRLYIKEDADLRGREPGEVAGIFYDEAIKSGVSKEN 822

Query: 412 ------------LALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVVK 450
                        A+ DA PR   V + E  +    +   ++S +  G   +VK
Sbjct: 823 VEIIYSEEKALEKAILDAQPRDFIVMFYENFEAALNIVNELKSEIQSG---LVK 873


>gi|222112122|ref|YP_002554386.1| UDP-N-acetylmuramate [Acidovorax ebreus TPSY]
 gi|221731566|gb|ACM34386.1| UDP-N-acetylmuramate [Acidovorax ebreus TPSY]
          Length = 474

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 129/380 (33%), Gaps = 45/380 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--------------KTYACIGSYN 144
            +A  +     ++A+ G+ GKTTT  ML   L                     A +G+  
Sbjct: 102 WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGVSARLGAPV 161

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSG 202
             +  P  LA  P+     + E            +  V  RP  AV+  +   H   F  
Sbjct: 162 RPLAGPGPLATAPL----FVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDD 217

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +I      +   +  +G + +N      E L    HA     + +FG +      +  
Sbjct: 218 LGQIERQFHHLVRTVPPSGRVVVNG---LEESLARVLHAGCWSGVANFGTA------VSD 268

Query: 263 WKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +    E    EV  +G+++  V     G H   N L  +     +      A +AL+ F 
Sbjct: 269 FGAQGEPHDFEVLQRGRTVARVQWTLTGVHNQLNALAAIAAAEHVGVTPAQAAEALARFE 328

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDM 378
             +   +R           + D+ +  +P +++  +  L +       G GR +AV    
Sbjct: 329 NVK---RRMELRGMVRGIAVYDD-FAHHPTALRTTLDGLRRRVGPKGEGRGRILAVF--- 381

Query: 379 CEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            E    +       A++   L   +++    +G    A     P       +  +  L  
Sbjct: 382 -EPRSNTMKLGTMKAQLPWALEPADLAFCHTAGLDWDAAAALAPMGARAQTAGDLPTLVG 440

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
            I++++  GD +V   SN  
Sbjct: 441 QIRAAVQPGDHIVCM-SNGS 459


>gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
 gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
          Length = 549

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 136/433 (31%), Gaps = 49/433 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+++       +     + ++ DSR+I         KG  +    ++  A   G    V 
Sbjct: 40  LESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYLDQADALGLPCYVA 96

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             D  ++  +L I V  V   L AL   A      S+  ++ ITG+ GKTTT       L
Sbjct: 97  QEDFSSATKALGIIVTDVRQAL-ALLSAAFYGDPASQLKVVGITGTKGKTTTAYFTHAIL 155

Query: 131 SSI-KKTYACIGSY------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           S+      A + S             N      L L RM         E  +  +    +
Sbjct: 156 SAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMMRQAVDAGMEYLVMEVSSQAY 215

Query: 178 ---LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                  +R  +     I+P H+S       E+    K +I      +  + +N   +  
Sbjct: 216 KVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQIAAN---SDNLVMNATMAHA 272

Query: 233 ELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--------------- 276
            L+   + A G   + +   + ++      + +     S   V                 
Sbjct: 273 SLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTVTASPLDPDPTLGFRISD 332

Query: 277 -QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT--AIKALSVFHPKEGRGKRYRCA 333
            QG S +      G     N    + IV  L  D+      +AL         G+    +
Sbjct: 333 GQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQALEAMEKVTISGRMETFS 392

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             QG   ++D  Y  N  S  A +  + +     + R I V G     G  +     ++ 
Sbjct: 393 SPQGSLAVVD--YAHNGVSTTALLDYVDKAYGKMDPRIILVTGS---AGNKAYDRRQEIV 447

Query: 394 EVLSLYNISHVWL 406
           +         ++ 
Sbjct: 448 QAAQDRIARFIFT 460


>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
 gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
          Length = 462

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 120/346 (34%), Gaps = 30/346 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + +++ +TGS GKTTT  ++   L       +  G+  N +   +       + ++ + E
Sbjct: 108 RGSLLGVTGSNGKTTTTSLIGHLLREEGVRVSVAGNIGNPLASAV-----REEAEWVVAE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFL 225
           L    L   R L    R  +AV+T +AP H+      E    AKA +   L+  TG   +
Sbjct: 163 LSSFQLHWARRL----RCSLAVVTNLAPDHIDWHGSYEAYVDAKANLVRALDPTTGMAIV 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               S   LL   S  + +         +     L + ++ +  S+  +  +        
Sbjct: 219 QR--SELPLLPPVSQTIPLSWTEDGEGEEGG-VTLIRSRREALLSFPGLGKRRLFSFDAL 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N  M     +++  D                   R +     G    +D+S
Sbjct: 276 SLLGDHNLENAAMAATATTLVLKDAPK--HVEEALTRFVAPPHRCQLVRELGKVRFVDDS 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N A+   A++ L        G ++ +LG   + GE   S    + E           
Sbjct: 334 KGTNVAATMTALTSL-------PGTKVILLGGQGK-GESYGSLAKAVTEWARFA-----V 380

Query: 406 LSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
           L G     +  AL  + +  +    +++            GD V++
Sbjct: 381 LFGEEGERIGKALDDAGYHRWSLVRSLNEAVPLAYDKAEAGDSVLL 426


>gi|319941745|ref|ZP_08016067.1| UDP-N-acetylmuramate [Sutterella wadsworthensis 3_1_45B]
 gi|319804678|gb|EFW01545.1| UDP-N-acetylmuramate [Sutterella wadsworthensis 3_1_45B]
          Length = 460

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 112/361 (31%), Gaps = 45/361 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           T++A+ G+ GKTTT  MLT  L          IG            A +       + E 
Sbjct: 107 TVLAVAGTHGKTTTTSMLTWILREAGLHPGFLIGGVPCWGEQS---AALGDPQAPFVIEA 163

Query: 168 GMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V  RP IA++  +   H   F  ++ I +    +   +   GTI  
Sbjct: 164 DEYDTAFFDKRSKFVHYRPRIAILNNLEYDHADIFENLQAIETQFHHLVRTMPSEGTIIA 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N      + + A+     ++   + FG           W    + S     L  +    V
Sbjct: 224 NAKAPALDRVLARGCWSKLERFDTPFGTPDG-------WTLAEDGS---ASLGAEVFGAV 273

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H  G +   N L  +            A+KAL  F    G  +R           +ID
Sbjct: 274 KIHMPGRYNELNALAAVAAARAAGVLPQAALKALESF---PGVHRRQEVKGEADGCLVID 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAV----------LGDMCEMGELSQSFHIDLA 393
           + +  +P ++      +  +     GRR+            LG M    +       D  
Sbjct: 331 D-FAHHPTAIH---ETIDGVRGRWPGRRLLAVLEPRSNTMKLGTMK---DRLAGALADAD 383

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            V         W     + AL        H   +   D L   + ++   GDV++   SN
Sbjct: 384 AVFCYAGPGVAWSPEEALKAL------GSHAWATHDFDALVTQVVNAARPGDVILCM-SN 436

Query: 454 S 454
            
Sbjct: 437 G 437


>gi|15602794|ref|NP_245866.1| hypothetical protein PM0929 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721249|gb|AAK03013.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 457

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 136/396 (34%), Gaps = 31/396 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +       +        +   L     ++A++G+ GKTTT  ML+ 
Sbjct: 67  MVIIGNAMKRGNPCVEYVLEHHLPYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLSW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    + D+ + E            +  V   P  
Sbjct: 127 ILDKCGLK---PGFLIGGISGNFGISARLGESDYFVIEADEYDTAFFDKRSKFVHYNPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I    ++   +     +  +G  +
Sbjct: 184 LIINNIGFDHADIFDDLKAIQRQFHHMIRTMPASGRILSVANEPNVK----ATLDMGCWS 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   ++ D+   +     + +   V  QG+ M EV  + +G H   N LM +     
Sbjct: 240 QQQF-LGQDQDWYAERISH--DCTQFGVFYQGEKMAEVYWNVVGQHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   +  A +AL+ F   +   +R          T+ D+ +  +P  + A ++ L     
Sbjct: 297 VGISIAEACQALATFISPK---RRLEVKGQVNGITVYDD-FAHHPTEILATLTALRD-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVLA--LKDALPR 420
            G  R +AVL    E    +     H D  E+        +V+L     +   + D + +
Sbjct: 352 GGGVRILAVL----EPRSNTMKMGVHKD--EIAPALGRADNVFLFQPENIGWDVVDIVSQ 405

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +    ++  +D L   I       D ++V  SN  
Sbjct: 406 CVQPAVWNMNLDKLVEMIADEAKPTDHILVM-SNGS 440


>gi|331006871|ref|ZP_08330124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
 gi|330419322|gb|EGG93735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
          Length = 454

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 120/346 (34%), Gaps = 31/346 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS  K+T   ++    ++     A  G+      VP+         D  + E
Sbjct: 108 TKPVIAITGSNAKSTVTTLVGEMAAACGLLPAVGGNLG----VPVLELLNNTLADVFVLE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++P  A +  ++  H+  ++ + E    K  I+   E    I +N
Sbjct: 164 LSSFQL----ETTYSLKPVAATVLNVSHDHMDRYASLAEYHQVKQRIYRHAES---IIIN 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             D     +  +        + SFG        D +        ++ ++  +        
Sbjct: 217 RQD-----VLTQPPLSKEANVISFGVDSAGNSPDMRSFGLLAQGDKLFLSHKFAPLLSTE 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L + S     ++  + AL  F   +G   R          T I+
Sbjct: 272 DIQIKGRHNYANALAALALGSAAGFGMEGMLDALKTF---KGLQHRCEYIATVNDVTYIN 328

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AAI      S   E   + + G   +  + S      L + ++  ++  
Sbjct: 329 DSKGTNVGATLAAIE---GFSVKNEKNIVLIAGGDGKGADFSP-----LVDAVN-RSVKT 379

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L G     L + L + +    +E++         +   GDVV++
Sbjct: 380 LILIGHDAEKLYNMLHQVVSCVKAESLIDAVKQASINAGKGDVVLL 425


>gi|194290815|ref|YP_002006722.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224650|emb|CAQ70661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 519

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 157/460 (34%), Gaps = 71/460 (15%)

Query: 33  DSRSIAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVNT----------DMVASIGS 80
           D+R       F    +    + G  F    +  G GLV ++            ++A+  +
Sbjct: 53  DTREAPANLVFLQAELTSAEFVGGPFAEGLLD-GIGLVAISPGLSPLEAATGALLAAAQA 111

Query: 81  LSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             IPV+G ++  + AL  L   +       ++AITG+ GKTTT  +    +    K+ A 
Sbjct: 112 RGIPVWGEIELFVRALRHLEAESG--YAPKLLAITGTNGKTTTTALTGRLVERAGKSVAV 169

Query: 140 IGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            G+ +      L+       + +  + EL    L      TH + PH A +  +   HL 
Sbjct: 170 AGNISPSALDKLSACIASASLPEVWVLELSSFQL----ETTHTLAPHAATVLNVTQDHLD 225

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS----- 253
               +E  A++KA IF          LN +D     +     A    T  +FG       
Sbjct: 226 WHGSMEAYAASKARIFGPAGHACVQVLNRNDRLTLDM-----ARPGSTPVTFGIDLPEVP 280

Query: 254 ------------------KNADFQLR---KWKQCSEQSWMEVQLQGKSM--EVVHHGIGY 290
                              + D +     + ++ +E     V ++ K +      H  G 
Sbjct: 281 GSFGILREGGMPWLVLAEPDPDAEGEGKPRGRKAAEAVQEAVPVRHKRLMPADALHIRGM 340

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N +  L +   +   ++  +          G   R             D+S   N 
Sbjct: 341 HNATNAMAALALCRAIDLPMNALLHG---LREYRGEPHRVEWVATIDDVEYFDDSKGTNV 397

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  AA+S L +       R + + G   +  + S      LA  ++ Y    V L G  
Sbjct: 398 GATVAALSGLDK-------RVVLIAGGEGKGQDFSP-----LAAPVAQY-ARAVVLIGRA 444

Query: 411 VLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              L+DAL  S      + T++            GD V++
Sbjct: 445 AAELRDALQGSGATLVDAATLEEAVTQAAGLAEAGDAVLL 484


>gi|152984122|ref|YP_001346475.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PA7]
 gi|150959280|gb|ABR81305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PA7]
          Length = 455

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 132/407 (32%), Gaps = 46/407 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G   V     +   +  +S P +  D VL                 ++A+ G+
Sbjct: 67  IGNALSRGNPAV--EHVLNKGLPYVSGPQWLADHVLQ-------------GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  ML   L     +    IG    + GV   L   P    F + E         
Sbjct: 112 HGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTP----FFVVEADEYDSAFF 167

Query: 176 RFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V  RP  A++  +   H   F  +  I      +   +   G I     +   E
Sbjct: 168 DKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGLIIRPSAEEALE 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM 292
            +        ++T       +   +Q R   +  + S  EV   G    EV     G H 
Sbjct: 228 RVLEMGCWTPVQT-----TGEGGQWQARLLAE--DGSRFEVLFDGVLQGEVNWPLSGLHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L +L     +    D    ALS F   +   +R          T+ D+ +  +P +
Sbjct: 281 VANALASLAAARHVGVLPDQGAAALSAFRNVK---RRMEKVAEVDGVTIFDD-FAHHPTA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGF- 409
           +   +  L +     + + IA++    E    S     H D     S+     V      
Sbjct: 337 IATTLDGLRK-RVGADTQVIAIV----EPRSNSMKLGAHRD-GLPDSVRQADQVLWYAPP 390

Query: 410 --HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                    A   ++     ++++ + + ++     G  VV+  SN 
Sbjct: 391 NLGWDLAATAAQCAVPSQVCDSLEAIIVQVRHLAKPGAQVVIM-SNG 436


>gi|302877302|ref|YP_003845866.1| UDP-N-acetylmuramate [Gallionella capsiferriformans ES-2]
 gi|302580091|gb|ADL54102.1| UDP-N-acetylmuramate [Gallionella capsiferriformans ES-2]
          Length = 446

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 126/368 (34%), Gaps = 40/368 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++ + G+ GKTTT  ML   L          IG    +  +   +   P    F + E  
Sbjct: 109 VLGVAGTHGKTTTASMLAWILEHAGLNPGFLIGGVPQNFDISARITESP----FFVIEAD 164

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P  A++  +   H   F+ +  I +    +   +   G +  N
Sbjct: 165 EYDTAFFDKRSKFVHYHPRTAILNNLEFDHADIFADLFAIETQFHHLVRTVPGNGLVVSN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             ++  + +  +        + +FG           W   +      V L G +  E+  
Sbjct: 225 GREAALQRVIERG---CWTPVEAFGGD-------TGWNIDTGNQ---VTLNGVAQGELKW 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L  L         V   + ALS F   +   +R          T+ D+ 
Sbjct: 272 ELLGEHNRMNALAALAAARHAGVPVALGLAALSEFKNVK---RRMEVKGIVNGITVYDD- 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNIS 402
           +  +P ++   ++ L      G  R +AVL         S +  + + +     SL +  
Sbjct: 328 FAHHPTAIDTTVAGLRH--KVGAARILAVLE------PRSNTMKLGVMKDALPGSLKDAD 379

Query: 403 HVWLS-GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            V+   G      K AL          + +D L   I  S + GD ++V  SN  GF  +
Sbjct: 380 QVFCYSGNLGWDAKSALAVMGDKAVVIDDLDTLIDVIAKSAMPGDHILVM-SNG-GFGGI 437

Query: 461 INLLLEEF 468
            + LL++ 
Sbjct: 438 HDKLLKKL 445


>gi|317402636|gb|EFV83195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans C54]
          Length = 456

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 116/361 (32%), Gaps = 34/361 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGI 164
             A ++A+ G+ GKTTT  ML   L +        IG     + V    AR        +
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFLIGGVAPDLHVS---ARYDPARRPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  AV+  +   H   F  +  I +    +   +  +G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTIPASGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           I         + + A+          +FG    AD   +     ++ +  EV+  G ++ 
Sbjct: 218 IIRPAHSDALDRVIARG---CWSETVTFG----ADGAWQADAPDADGA-FEVRCNGAAVG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H   N L  L             + ALS F   +   +R           +
Sbjct: 270 TVRWALGGEHNRMNALAALAAAEHAGVPAAEGVAALSRFGGVK---RRMELRGTVNGVKV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
            D+ +  +P ++   +  L      G  R +AVL    E    +       A +  SL +
Sbjct: 327 YDD-FAHHPTAIATTVQGLR--RQVGPARILAVL----EPRSNTMKLGAMAARLPDSLRD 379

Query: 401 ISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G             +   P        + +D L   +  +   GD V+V  SN
Sbjct: 380 ADLVFCFGARAGKHALGWNPAEVLAPLGDRASSYDDIDALVAAVVQAARPGDQVLVM-SN 438

Query: 454 S 454
            
Sbjct: 439 G 439


>gi|255659950|ref|ZP_05405359.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
 gi|260847824|gb|EEX67831.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
          Length = 466

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 110/318 (34%), Gaps = 35/318 (11%)

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
               +IGVPL+   + +     I  E+    +      T    PH+A +  + P H+   
Sbjct: 143 GVGGNIGVPLSEEALRIGRGGCIAAEISSYQM----EATEHFHPHVAAVLNVTPDHIVRH 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +E   + K  +F    +   + LNYDD     +KA++ A     +  F + +  + + 
Sbjct: 199 GSMEVYQAMKERLFREETEDDYLVLNYDDEKTRGMKARTVA----QVCYFSRREELE-EG 253

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +   +   + ++ QG+  E+ H       G H  +N L  + +      +    +  
Sbjct: 254 VFVRGDVKNGLIVIRWQGQEYELCHTDELGIKGPHNVENALAAIAVAFFAGCEPTLMVPV 313

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F   E    R             ++S   N  S   A+          +G  I + G
Sbjct: 314 LKSFRGVE---HRIEYVTTIDGVPYYNDSKATNTDSAIKALETF-------DGHIILLAG 363

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMD 431
                G+   +   D  +++    +  + L G     F+  A+ +  P +       +M 
Sbjct: 364 -----GDDKMTDLTDFMKLVCER-VDALVLIGRAAARFYGAAVDNGFPENQIYAAGYSMR 417

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  +   +  VV++
Sbjct: 418 KAVEIAHALAKEPAVVLL 435


>gi|182439212|ref|YP_001826931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467728|dbj|BAG22248.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 476

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 117/385 (30%), Gaps = 42/385 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV+G  +    L         R  A  +A+TG+ GKTTT  ML   L +    
Sbjct: 90  AAAEAGIPVWGDVE----LAWRLRGDDGRKPAPWLAVTGTNGKTTTVRMLASILRAAGLR 145

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+    +   +       + D    EL    L         +R H A +  +AP H
Sbjct: 146 TEAVGNIGVSLLDAVV---GETEYDVLAVELSSYQL----HWAPSLRAHSAAVLNLAPDH 198

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTI-YSFGKSK 254
           L     +E  A+ K  ++EG   T     N  D   E L  ++  + G + I ++ G   
Sbjct: 199 LDWHGSMEAYAADKGRVYEG--NTVACVYNVADPATEDLVREADVVEGCRAIGFTLGAPG 256

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDT 312
            +   +            +   Q + +  V        H   N L    +          
Sbjct: 257 PSQLGVVDGILVDRAFVADRHKQAQELAEVSDVDPPAPHNIANALAAAALARAFGVQPAA 316

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L  F        R     +      +D+S   N  + +A+++             I
Sbjct: 317 VRDGLRAF---RPDAHRIEHVADLDEVRYVDDSKATNTHATEASLAAYDS---------I 364

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD- 431
             +      G       I  A+ L       V L G     +++AL R         +D 
Sbjct: 365 VWIAGGLAKGATFDELVIGAAKRLR-----GVVLIGADRALIREALTRHAPEVPVVDLDR 419

Query: 432 -------GLFLFIQSSLVDGDVVVV 449
                              GD V++
Sbjct: 420 TDTGAMSEAVARAAELARPGDTVLL 444


>gi|94501144|ref|ZP_01307667.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
 gi|94426720|gb|EAT11705.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
          Length = 456

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 127/371 (34%), Gaps = 44/371 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV 160
             L     ++A+ G+ GKTTT  ML   L          IG    + GV   L     + 
Sbjct: 97  NHLLKDKWVMAVAGTHGKTTTTSMLAWVLEDCGFQPGFLIGGVPKNFGVSARLG----ES 152

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPH--IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           DF + E            +  V  H    ++  +   H   F  ++ I +    +   + 
Sbjct: 153 DFFVVEADEYDSAFFDKRSKFVHYHGRTVILNNMEFDHADIFKDLDAIKTQFHHLVRTIP 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G I    +D+    +K+           + G    A+ +          S  EV  QG
Sbjct: 213 SEGQIIFPANDAN---IKSTLDMGCWTPTVTLGGDWRAELK------HVSGSVFEV-YQG 262

Query: 279 KSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + +  EV     G H   N L  +     +      +I AL+ F   +   +R     + 
Sbjct: 263 EQLVGEVRWKQTGQHNVNNALACIAAAHHVGILPKDSIAALNRFVGVK---RRMELICDA 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEV 395
               + D+ +  +P ++++    L+ ++  GE +RI AV+    E    +    +  AE+
Sbjct: 320 KEVKIYDD-FAHHPTAIES---TLAGMANSGEFKRIRAVI----EPRSNTMRMGVHKAEL 371

Query: 396 L-SLYNISHVWLSGF-----HVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVD 443
             ++     +           +  + +       V+        + +D +   +  +   
Sbjct: 372 PKAVEQADEIIWFQPKGLNWDMENVVEQCNIPNRVNDEPKSVLFDDIDAIIAHLVQTSEP 431

Query: 444 GDVVVVKSSNS 454
           GD +V+  SN 
Sbjct: 432 GDGIVLM-SNG 441


>gi|170719785|ref|YP_001747473.1| UDP-N-acetylmuramate [Pseudomonas putida W619]
 gi|169757788|gb|ACA71104.1| UDP-N-acetylmuramate [Pseudomonas putida W619]
          Length = 449

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 121/369 (32%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGDTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPSEGLVI--- 218

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                E    +   +G  T + + G+      +L      ++ S  EV  +G++  +V  
Sbjct: 219 -HPTTEQALERVIGMGCWTPVQTTGEGGQWQARL----LSADGSRFEVLFEGQAQGIVDW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I  LS F   +   +R          T+ D+ 
Sbjct: 274 PLTGQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVK---RRMETVAEVQGVTIYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      GE   IA++    E    S     H D     S+ +   
Sbjct: 330 FAHHPTAIATTLDGLR--KRVGEAPVIAII----EPRSNSMKLGAHRD-GLPESVNDADQ 382

Query: 404 VWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V       L       A    +    +++++ +   ++     G  VV+  SN  GF   
Sbjct: 383 VVWYAPANLGWDLAATAAQCKVPSVVADSLEAIIERVKGQARPGTHVVIM-SNG-GFGGL 440

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 441 HGKLAEALK 449


>gi|289551034|ref|YP_003471938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180566|gb|ADC87811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 449

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 127/345 (36%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTTT  ++    S  + T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTTTSLIGDMFSKSRLTGRLSGNIG---YVASKVAQDTHPDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT I  AHL     +E   +AK +I++       +  
Sbjct: 166 ELSSFQLLGIDK----YRPHIAIITNIYSAHLDYHGTLENYQNAKKQIYKNQTADDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    +S  L  KT+Y F   +  D   ++      +   + + +        
Sbjct: 222 N----YHQRHLIESEQLKAKTLY-FSTQQEVDGIYIKDNFIIYKGVRI-INIDD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    V   I +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLASLLAGVPVKAIIDSLTTFS---GIEHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++  +Q         I  L    + G        +L   +    +  V
Sbjct: 327 SKATNTLATQFALNSFNQ--------PIIWLCGGLDRGNDFD----ELIPYMKHVRVMVV 374

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +        +K    +  +V  +  +      +Q  +   DVV++
Sbjct: 375 FGE-TQEKFVKLGTSQGKYVIKATDVTDAVDKVQDVIEPNDVVLL 418


>gi|257415612|ref|ZP_05592606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis AR01/DG]
 gi|257157440|gb|EEU87400.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ARO1/DG]
          Length = 456

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 98/302 (32%), Gaps = 36/302 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I + +    T+ LN++    + L   + A     +  F   +       +     E   
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKE-----AVEGAYLLEG-- 259

Query: 272 MEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++    + +         G H  +N L  + +  +         + L+ F        R
Sbjct: 260 -KLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLTNFSGVP---HR 315

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +           ++S   N  + + A+S           +++ +L    + G       
Sbjct: 316 TQFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL- 367

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVV 447
                V +L  +  + L G     L +A  ++    + ++E +              D +
Sbjct: 368 -----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTI 422

Query: 448 VV 449
           ++
Sbjct: 423 LL 424


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040776|gb|ACT57572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 124/342 (36%), Gaps = 42/342 (12%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             ++  IA+TG+ GK++T  +++  L          G+    IG+P+          F +
Sbjct: 110 SLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEYFSPNRFYV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     +     LT  + P I V+  I+P HL     +E   + K +I   +  +    
Sbjct: 166 IECSSYQI----ELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKI---VTMSKHAI 218

Query: 225 LNYDDSFFELLKAKSHALG--IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  +D   E +    + +G  I  I S     ++D  +       ++S+++     + + 
Sbjct: 219 ICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYI-------DESFLKCSATSEVIF 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   H  QN++ +  +   L   V+   +A        G   R +     G    I
Sbjct: 272 DFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRA---LLSCGGLTHRLQTIARLGHVIFI 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++S   N  S+  A           E RRI  + G + +  + S  F         +  I
Sbjct: 329 NDSKATNLHSVIHAF--------LNEKRRIYWIAGGLSKSDDFSTLF-------PFISKI 373

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +  +  G   +         I+   S+T+D     ++S + D
Sbjct: 374 AKAYFIGNSAMLFFHHFGGKINSTLSKTLDQA---LKSVVRD 412


>gi|171913321|ref|ZP_02928791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 457

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 109/353 (30%), Gaps = 45/353 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++  A R   +   +AITG+ GKTTT E++    +         G+Y + +     +A
Sbjct: 107 MGEIEFAWRPIKEVPTVAITGTNGKTTTTELMERMFNGCGHRTIACGNYGHALSE---VA 163

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D    E+    L  I       RP +AV    AP HL  +   E   +AK  IF
Sbjct: 164 VSGETYDLLTVEVSSFQLETI----TSFRPRVAVWLNFAPDHLDRYPDNEAYFAAKKRIF 219

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWM 272
           + +       +   +   EL            + +F    +  ADF L   +        
Sbjct: 220 DYMTPNDVAIIRAGEPLGEL---------QPRVVTFTTEPDVEADFMLYHDR-------- 262

Query: 273 EVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  +G+ +  V        H  +N +  L    ++    +  ++        E    R 
Sbjct: 263 -ILFRGEKIARVSDLPLHERHNIENQMAALAAGWVMGLAFEDMLEG---LSGYEPARHRC 318

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    + I++S   N  +++  +          +   + + G   E G     F  
Sbjct: 319 EVVSVVNGRSYINDSKATNLHALETCLKS-------QDAPVVLIAGG-KEKGLDYSPF-- 368

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                L    ++ +   G     L       +    + ++             
Sbjct: 369 ---RSLITEKVTALVTIGEIADKLSALFSDLVPCRQAPSVVAAVEIATQLAAP 418


>gi|205355810|ref|ZP_03222579.1| UDP-N-acetylmuramate-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346244|gb|EDZ32878.1| UDP-N-acetylmuramate-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 432

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 127/339 (37%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L                I    
Sbjct: 86  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDASVIIGA-------ILKEF 138

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++S   E++    
Sbjct: 139 DSNMIYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYSN--EVSKLHH 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L     Y     KN   ++  +K     + 
Sbjct: 192 AYAEFLDTAKIRVINAEDEFLKNYKNESTKL-----YPSKDIKNCTMRIENFKPF---TS 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 244 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 296

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 297 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 354

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 355 FAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFVE 393


>gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
 gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
          Length = 902

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 115/344 (33%), Gaps = 40/344 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
            +V GA+  +        +  I+++TG+ GKTTT  +L   +    K      +   +I 
Sbjct: 469 RNVAGAVMDMLFPGSKNGRIPILSVTGTNGKTTTTRLLAHIIKQTGKVVGYTTTDGTYIG 528

Query: 148 ---------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL- 197
                      P +   +  D    +  L  +  G +R         + ++  +   HL 
Sbjct: 529 EYLAETGDNTGPQSAHLILSDPTVEVAVLETARGGILRSGLGFSSCEVGIVLNVTADHLG 588

Query: 198 -SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             +   IE++A  K+ + E +   G   LN +D     +  +        +  F    N 
Sbjct: 589 IGDIDTIEQLAKLKSVVAESVMPKGYAVLNAEDPLVAAMADRVKG----QVAYFSMDPNN 644

Query: 257 DFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  LR  +     +  E                +  ++ +   G    M  N L     V
Sbjct: 645 ELLLRHTEAGGLAAIYENGYISILKGDWTLRIEKAVNVPITMAGKAPFMIANALAACLAV 704

Query: 304 SILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 ++   K LS F    +    R        +  L+D  Y  NPAS +A    L  
Sbjct: 705 FTQGVKIEHIRKGLSTFVASVDQTPGRMNMFNMGSYHALVD--YAHNPASYEA----LGG 758

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              +  G+RI V+G     G+      + L E+ +      + +
Sbjct: 759 FVRNWPGKRIGVVGGP---GDRRDEDFVSLGELAADI-FDEIII 798


>gi|226323684|ref|ZP_03799202.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
 gi|225207868|gb|EEG90222.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
          Length = 453

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 102/328 (31%), Gaps = 32/328 (9%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHI 186
             L  I K          +IG P T A      D   + EL    L  I    H   P +
Sbjct: 125 SLLGEIMKNACDSVFVVGNIGTPYTNAAADTREDSVIVAELSSFQLESI----HTFHPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + +  I P HL+    +E    AK  I +         LNY+D     +  +  A  +  
Sbjct: 181 SAVLNITPDHLNRHHTMEAYIRAKMNIAKNQTPEDICVLNYEDEETRKMADEFQASVLFF 240

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  +             E +    V  +          +G H  +N++  + + + 
Sbjct: 241 SSKHKLEQGIYLDGEDIVYKPEKEKEGTVICKTGE----LQILGVHNYENVMAAVAMAAA 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D+D   K++  F   E    R      +      ++S   NP +    I  +++ + 
Sbjct: 297 YGVDLDVIRKSVLAFKGVE---HRIEYVAEKNGVVYYNDSKGTNPDAAIKGIQAMNRPTI 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLAL-KDALPRSI 422
              G             +    FH    E +  ++  + ++ L G     + K+A     
Sbjct: 354 LIGG-----------GYDKQSDFH----EWIQSFDGKVRYLVLIGATKEQIQKEAAECGF 398

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVV 449
           H     +T +            GD V++
Sbjct: 399 HDCILKDTFEEALDTCVELARPGDAVLL 426


>gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
 gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
          Length = 513

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 122/376 (32%), Gaps = 37/376 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 ++ D+R++AP       KG  +   +F+    ++G    V  +D+ +       
Sbjct: 38  DTPFTNLTYDTRTVAPNTLLVC-KG-RF-RPEFLDGTEERGLAAYVAESDLSSHTTK--- 91

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSS--------- 132
           P   V+D   AL+ LA A         T+I ITG+ GKTTT       L++         
Sbjct: 92  PGLIVNDARKALSLLAAAFYDHPERDLTVIGITGTKGKTTTAYFTQSILNTYSAGRCALF 151

Query: 133 -------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                     TYA              + R  VD       + +S         + +   
Sbjct: 152 SSVDNCLDGHTYAESDLTTPESLDAFRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGLTFD 211

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           +A    I+P H+S       E+    K +I      +  + L  D    +LL+  + A G
Sbjct: 212 VAAFLNISPDHISPIEHPTFEDYFHCKRQIIAN---SRALVLGADCDHHDLLREDAKAAG 268

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTL 300
           I  +  F    +A    R      E     +    +S+    +     G     N    +
Sbjct: 269 I-DVTEFAMGGDAQVVTRLDPNNKEGFIATISDGERSVTLEPMALDMTGEFNIVNAAAAI 327

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I         +            GR +R R     G   L+   +  N  S+K+ +  +
Sbjct: 328 AIAHRAGVPASSQAMHAVQNVQVPGRMERIR----GGDNLLVYVDFAHNYISVKSLVDEI 383

Query: 361 SQISPHGEGRRIAVLG 376
            ++      R   V G
Sbjct: 384 ERVYGERNPRITLVSG 399


>gi|222825170|dbj|BAH22327.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Wolbachia endosymbiont of Cadra cautella]
          Length = 284

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 16/206 (7%)

Query: 197 LSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           +     I+E   AK  +F+  L K  T  LN D   +  L   +   G K + ++GK KN
Sbjct: 1   MDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNK-VITYGK-KN 58

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +D  L K    +   ++ +Q+  +         G   A N+L  +GIV     D      
Sbjct: 59  SDITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQR--M 116

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +       GR ++          T     Y   P+++K     L  +  H   + + V 
Sbjct: 117 CIDKLASPSGRMEKV--------NTFAFVDYAHTPSALK---QALLSLKWHFNKKIVLVF 165

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNI 401
           G      +  ++    +A++L+   I
Sbjct: 166 GCGGNRDQTKRAEMGKIAQMLAGKVI 191


>gi|58697458|ref|ZP_00372747.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536107|gb|EAL59735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 418

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 111/384 (28%), Gaps = 82/384 (21%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +I +TG+ GK+TT  ++   L S  K  A  G+          +  +  D +  
Sbjct: 14  KTTNQKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVP------VLDLERDAEIY 67

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L + +   I+ +  I P H+     +E   + K ++  G E     
Sbjct: 68  VIELSSFQL----ELMNEINVDISALLNITPDHIDRHGSMENYIATKLKLINGSE---VA 120

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF--------------------------------- 250
            +  D+     +  K     I    ++                                 
Sbjct: 121 VIGCDNEITADIFNKFTGDKIPISVTYSPMSFQRVTLESRKEKPLPTTQMTEGGARDLIS 180

Query: 251 --------------GKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                         G  +N  D  +            ++ L+ ++  +    +  ++  N
Sbjct: 181 LAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSVSDVKINLISN 240

Query: 296 M---LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                 T  +  +L  D +T I  +  F    G   R            +++S   N  S
Sbjct: 241 AENIAATYAVCKVLGVDSNTIINGIKSFS---GLRHRNELLGKIRNVFFVNDSKATNAKS 297

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + AI     I+    GR         + G  S S H           +   +L G    
Sbjct: 298 SEKAILSYENINWIAGGRS-------KKGGIESLSKH--------FTRVRKAFLIGESTE 342

Query: 413 ALKDALPRSIHVHYSETMDGLFLF 436
           A  + +   +       ++  F  
Sbjct: 343 AFANVMENKVDYVKCCNLEDAFRL 366


>gi|121595934|ref|YP_987830.1| UDP-N-acetylmuramate [Acidovorax sp. JS42]
 gi|120608014|gb|ABM43754.1| UDP-N-acetylmuramate [Acidovorax sp. JS42]
          Length = 474

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 128/380 (33%), Gaps = 45/380 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--------------KTYACIGSYN 144
            +A  +     ++A+ G+ GKTTT  ML   L                     A +G+  
Sbjct: 102 WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGVSARLGAPV 161

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSG 202
             +  P  LA  P+     + E            +  V  RP  AV+  +   H   F  
Sbjct: 162 RPLAGPGPLATAPL----FVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDD 217

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + +I      +   +  +G + +N      E L    HA     + +FG +      +  
Sbjct: 218 LGQIERQFHHLVRTVPPSGRVVVNG---LEESLARVLHAGCWSGVANFGTA------VSD 268

Query: 263 WKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +    E    EV  +G+++  V     G H   N L  +     +      A +AL+ F 
Sbjct: 269 FGAQGEPHDFEVLQRGRTVARVQWALTGVHNQLNALAAIAAAEHVGVTPAQAAEALARFE 328

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDM 378
             +   +R           + D+ +  +P +++  +  L +       G GR +AV    
Sbjct: 329 NVK---RRMELRGTVRGIAVYDD-FAHHPTALRTTLDGLRRRVGPKGEGRGRILAVF--- 381

Query: 379 CEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            E    +       A++   L   +++    +G    A     P       +  +  L  
Sbjct: 382 -EPRSNTMKLGTMKAQLPWALEPADLAFCHTAGLDWDAAAALAPMGARAQTAGDLPTLVG 440

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
            I++ +  GD +V   SN  
Sbjct: 441 QIRAVVQPGDHIVCM-SNGS 459


>gi|238060252|ref|ZP_04604961.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
 gi|237882063|gb|EEP70891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
          Length = 331

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 100/311 (32%), Gaps = 33/311 (10%)

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A     V   + E+    L   R     VR  +   T     HL   +   +  +AKA++
Sbjct: 4   AARERGVTALVMEVSSHALAMGR--VGGVRFTVGGYTNFGSDHLDFHADSADYFAAKAQL 61

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F+G  +     LN+DD     L   +        YS      A +               
Sbjct: 62  FDG--RCAVEVLNHDDPALRPLFTPATVS-----YSAAGDPTATWYATDVDGEGYAQRFT 114

Query: 274 VQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               G  ++       G H   N L+ +  +     D  TA   ++      G   R   
Sbjct: 115 AHGPGGLTVPAGVALPGRHNVANALLAIAALVGAGVDAPTAAAGVAACGGVPG---RLEL 171

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    + + Y     ++ AA++ L ++S    GR I V+G     G+  +    ++
Sbjct: 172 VSAAGPVRGVVD-YAHKTDAIVAALAALRELSA---GRLICVIGA---GGDRDRGKRPEM 224

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFL------FIQSSLV- 442
               +      V ++  +    + A  R+   +  + + T   +         I  ++  
Sbjct: 225 G-AAAARGADVVLVTDDNPRTEEPAAIRAEVLVGAYAAATPARIVEVGGRRAAIDEAVRL 283

Query: 443 --DGDVVVVKS 451
              GDV+ V  
Sbjct: 284 AAPGDVIAVLG 294


>gi|313205463|ref|YP_004044120.1| mur ligase middle domain protein [Paludibacter propionicigenes WB4]
 gi|312444779|gb|ADQ81135.1| Mur ligase middle domain protein [Paludibacter propionicigenes WB4]
          Length = 456

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 140/426 (32%), Gaps = 48/426 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGS 116
              + KG   V++          L        ++   +  L      +++  T I + GS
Sbjct: 58  PDRIHKGLHAVILGMHATEDNPEL----IRAKELGLKIYSLPEYLFQQTRSKTRIVVGGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++       +            I     + R+  +    +FE        I 
Sbjct: 114 HGKTTTTAII--LFVQKQLRIDTDYMVGAQIDGFDNMVRLSYESRIAVFEGDEYLTSPID 171

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                HL +PHIAV+T IA  H++ F   E+      +  + +E  G +    DD     
Sbjct: 172 PRPKFHLYKPHIAVLTGIAWDHINVFPTFEKYVEQFRKFVDLMEVQGRLVYFEDDKNLNE 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +         + I  FG      +   K +  +  +++  +      +V     G H  Q
Sbjct: 232 IAGNLR----RDIVPFG------YTTPKHEVRNGVTYLITKYG----DVPLKIFGQHNLQ 277

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+         +    +     +S F    GR +  + A        +D  +  +P+ ++
Sbjct: 278 NIEAARLACKQIGVTDEHFYSVISEFSGAAGRLQ--KVAETAASVAFVD--FAHSPSKLR 333

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAEVLSLYNISHVWLSGF-- 409
           A +  + Q  P  + + IA +    E+   S     F    A+ ++  +++ V+ +    
Sbjct: 334 ATVKAVRQQFP--DKKLIACM----ELHTFSSLTDEFLPQYADSMAEADVAFVYYNPEVV 387

Query: 410 HVLALKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVVVKSSN---SCGFYR 459
               L +  P  +   +             L   ++    D   ++  SS          
Sbjct: 388 EQKRLAEITPEQVKQAFGGDKLTVFTDAQALQAALREQQYDNTALLFMSSGNFSGINLTE 447

Query: 460 LINLLL 465
           L   LL
Sbjct: 448 LAKELL 453


>gi|307275476|ref|ZP_07556618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|306507864|gb|EFM76992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|315171930|gb|EFU15947.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1342]
          Length = 456

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 97/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTVEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++                G H  +N L  + +  +         + L  F        R 
Sbjct: 267 YIM-------PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNILATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     L +A  ++    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|113869228|ref|YP_727717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha H16]
 gi|113528004|emb|CAJ94349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ralstonia eutropha
           H16]
          Length = 503

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 151/460 (32%), Gaps = 71/460 (15%)

Query: 33  DSRSIAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVNT----------DMVASIGS 80
           D+R       F    +    + G  F    +  G GLV ++            ++A+  +
Sbjct: 37  DTREAPANLVFLQAELTSAEFVGGPFADSLLD-GIGLVAISPGLSPLEAATGALLAAAQA 95

Query: 81  LSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             IPV+G ++  + AL  L   +       I+AITG+ GKTTT  +    +    K+ A 
Sbjct: 96  RGIPVWGEIELFVRALRHLEAESG--YAPKILAITGTNGKTTTTALTGRLVERAGKSVAV 153

Query: 140 IGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            G+ +      L+       + +  + EL    L      TH + P  A +  +   HL 
Sbjct: 154 AGNISPSALDKLSACIASASLPEVWVLELSSFQL----ETTHTLAPAAATVLNVTQDHLD 209

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS----- 253
               +E  A++KA IF          LN +D     +     A    T  +FG       
Sbjct: 210 WHGSMEAYAASKARIFGPAGSECVQVLNRNDRLTMDM-----ARPGSTPLTFGTDLPETP 264

Query: 254 ----------------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGY 290
                              D       +   +   EV  +   +           H  G 
Sbjct: 265 GSFGILREGGMPWLVLAEPDPDAEGEGKPRRRKAAEVAREAVPVRHKRLMPADALHIRGM 324

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N +  L +   +   ++  +          G   R             D+S   N 
Sbjct: 325 HNATNAMAALALCRAIDLPMNALLHG---LREYRGEPHRVEWVATIDDVEYFDDSKGTNV 381

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  AA+S L +       R + + G   +  + S      LA  ++ Y    V L G  
Sbjct: 382 GATVAALSGLDK-------RVVLIAGGEGKGQDFSP-----LAAPVAQY-ARAVVLIGRA 428

Query: 411 VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L+DAL      +  + T++            GDVV++
Sbjct: 429 AGELRDALQGSGASLVDAGTLEEAVTKAAGLAESGDVVLL 468


>gi|325293467|ref|YP_004279331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
 gi|325061320|gb|ADY65011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
          Length = 469

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 125/385 (32%), Gaps = 56/385 (14%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDIELFIRERRAHAPDCPFIAITGTNGKSTTTALIAHILKASGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    +         P    F + E     +     L   + P   ++  + P 
Sbjct: 142 DTQLGGNIGTAVLS----LDPPKAQRFYVVECSSYQID----LAPTINPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-------IY 248
           HL     ++  A  K  +  G   +GT  +  DDS+  L+  +    G+K        + 
Sbjct: 194 HLDRHGTMQHYADVKERLVAG---SGTAIVGVDDSYSTLIADRIERAGVKVERISKRNVV 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S G         R  +    +S + V L G     +    G H AQN    +     +  
Sbjct: 251 SEGLYAEG---SRILRAHGGKSSLLVDLDG-----IQTLRGSHNAQNAAAAIAACLAVGV 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +      +      G   R +    +G  T +++S   N  +   A+S   +I     
Sbjct: 303 SEEDV---RAGLKSFPGLKHRMQPVGRRGNVTFVNDSKATNADAAAPALSSYERIYWIAG 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G   A  G +  +  L                I+  +L G         L  ++    S 
Sbjct: 360 GLPKA--GGIASLAPLFPR-------------IAKAYLIGEAAAEFAATLGEAVPYEISG 404

Query: 429 TMDGLFLF----IQSSLVDGDVVVV 449
           T+D          +     G +V++
Sbjct: 405 TLDKAVQHAAADAEKDATAGSIVML 429


>gi|307296816|ref|ZP_07576634.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
 gi|306877729|gb|EFN08955.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
          Length = 925

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 146/483 (30%), Gaps = 84/483 (17%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----GAGLV---------VVNTD 73
           + I  D+R IA Q A  A  G    G DF+   + +     G G+V         +    
Sbjct: 436 DDIHPDNRLIAEQAAAVA--GLDVCGIDFLSPDISRPVRETGGGIVELNAAPGFRMHLEP 493

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                  ++ PV        AL       R      I AITG+ GK+TT  M+   L   
Sbjct: 494 SSGPARDVAAPVI------DALFPPGRRGR----IPIFAITGTNGKSTTARMVGRILCQH 543

Query: 134 KKTYACIGSYNNHIGVPL-------------TLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                   +   +    L              + R P  VD  + E   +  G +R    
Sbjct: 544 GLNVGMATTSGVYFNGHLLKEADASGPRSARMVLRNPA-VDAAVLE--TARGGILREGLG 600

Query: 181 LVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             R  +  +  +   HL       +E +A  K+ + E + + G   LN DD     +   
Sbjct: 601 YDRADVGAVLNVTADHLGLKGIDTVEALADVKSVVVENVARRGFSILNADDPMCLRIARH 660

Query: 239 SHAL--------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--------SME 282
           +           G +   +  +   A       +       + V   G+         + 
Sbjct: 661 AGGRIVWFSLEGGARMAETLRRHLAAGGMAVLREADEGGGEIVVHRGGQRTVLMHASEIP 720

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTL 341
               GI      N L  + +        +T    L  F    E    R     + G   +
Sbjct: 721 ATLGGIAEFNIANALAAVAMCMAHGVPAETVRDGLRAFTSSFEDSPGRLNMMESHGRRVI 780

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-GELSQSFHIDLAEVLSLYN 400
           +D  Y  NPA + A   V+ ++     GR I     M  + G+      +++  + +   
Sbjct: 781 VD--YAHNPAGLIALGQVVDRLRGGH-GRAI----GMVSIPGDRRDCDIVEMGRIAAGIF 833

Query: 401 ISHVWLSGFHVL--------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              ++                     AL   +P        +    +   ++     GD+
Sbjct: 834 DDIIFREAPDGRGRPRGQTNALLTQGALNAGVPMERVHRIIDEFAAVDAALR-MARPGDL 892

Query: 447 VVV 449
           +V+
Sbjct: 893 LVI 895


>gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
 gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
          Length = 502

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 128/373 (34%), Gaps = 45/373 (12%)

Query: 96  NKLAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            ++ +A R+R     A  + +TG+ GKTTT +MLT  L +  K     G+    I   + 
Sbjct: 124 GEVELAWRMRPLEGAAPWLTVTGTNGKTTTVQMLTSILRAAGKRAISAGNVGTPILEAIM 183

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               P   D    EL    L      +  +RP  +V   +AP H+      E+  +AK +
Sbjct: 184 ---DPEPFDAIAVELSSFQL----HWSDSIRPQASVCLNVAPDHVDWHGSYEDYLAAKGK 236

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSW 271
           ++   +       N DD   E L   +          F     A   L    +  +++++
Sbjct: 237 VYNNTQV--ACIYNVDDPQTERLVEDAEVQEGCRAVGFTLGTPAPSMLGLVGEVLADRAF 294

Query: 272 MEVQLQG-------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +E +            +      +  H+  N L    +      +       L  F P+ 
Sbjct: 295 VEQRRHAAAELATIDDLRGDSPDVAPHLVANALAAAALARAHGVEAGAVRAGLKAFRPEA 354

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R            +D+S   NP +  A+++    +                  G L
Sbjct: 355 ---HRIAHVATLEDVRYVDDSKATNPHAAAASLTAYEHVVWIAG-------------GLL 398

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSET--MDGLFLF 436
             +   DL    +  ++  V L G     + DAL R       + V  ++T  MD +   
Sbjct: 399 KGADVDDLVRTAAP-SLRGVVLIGRDRAQIADALARHAPDVPVVDVADTDTGVMDRVVSQ 457

Query: 437 IQSSLVDGDVVVV 449
             S    GDVV++
Sbjct: 458 AASLAQSGDVVLL 470


>gi|325962947|ref|YP_004240853.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469034|gb|ADX72719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 473

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 21/287 (7%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV+G  DV  A        R  +    +AITG+ GKTTT  +    L +       +G
Sbjct: 65  HIPVWG--DVELAWRVRVREGRKTAD--WLAITGTNGKTTTVGLTESMLRAAGLKAIAVG 120

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +    I   +   R PV+ D    EL    L      +  + P  +V   IA  H+    
Sbjct: 121 NVGTPILDAI---RDPVEYDVFAVELSSFQL----HWSESLSPVASVCLNIAEDHVDWHG 173

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             +   + KA+++E  +K      N +    E +   +  +       F     A   L 
Sbjct: 174 SYDSYVADKAKVYERTQK--ACLYNAEQIETERMVENADVVEGCRAIGFTTLTPAISMLG 231

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVH-----HGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +          + +  + E+            HM  N L   G+V     +     + 
Sbjct: 232 VVEGLLVDRAFIEERKDSAAELASMRDLGALAPRHMVANALAAAGLVRAYGVEPKAVRQG 291

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                       R +          +++S   NP +  A+++    I
Sbjct: 292 ---IQDYIPGDHRIQPVARHNGVLWVNDSKATNPHAASASLAAFKDI 335


>gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
 gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
          Length = 429

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 101/320 (31%), Gaps = 44/320 (13%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------V 149
                 S   II ITG+ GKTTT   +   L S+    A  G+    I            
Sbjct: 51  KNHLDMSSIKIIGITGTNGKTTTATTIYKILLSLGFKVALQGTRGFFINETQVEDYSLTT 110

Query: 150 PLTLAR-------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           P+ L         +     F + E+    + + R     +   + + T I   HL     
Sbjct: 111 PIQLGNFVHIQKAIQNGCQFFVMEVSSHAIEQNRI--EGLTFALKIHTNITRDHLDYHKT 168

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           IEE    K      L       +N DD+  +              +++     +D+++ K
Sbjct: 169 IEEYIRVKNSF---LSDDSVKLVNIDDNVMKY--------NFTNAFTYSLKNLSDYKVSK 217

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFH 321
           ++       +E   + K+       +G     N++ ++  V I T   ++   + L  F 
Sbjct: 218 YE-FEHGMKVEFSYKEKTYTFTSMMMGIFNIYNLIASIAAVHITTQKSLEDICQTLKNFS 276

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR +            LI   +   P  M     VL           I V G     
Sbjct: 277 CVSGRMEIVSLN------PLIIVDFAHTPDGMD---EVLKSFPNKD---IICVFGAGGNR 324

Query: 382 GELSQSFHIDLAEVLSLYNI 401
               +    ++A+  S + I
Sbjct: 325 DSAKRPLMGEVAKKYSKHII 344


>gi|295135719|ref|YP_003586395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Zunongwangia profunda SM-A87]
 gi|294983734|gb|ADF54199.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Zunongwangia profunda SM-A87]
          Length = 450

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 130/376 (34%), Gaps = 45/376 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T + + GS GKTT   M+   +                +       ++  D DF + E
Sbjct: 102 TKTRVVVGGSHGKTTITSMILHVM--HYHDRQVDYMVGAQLEGLENTIQLNDDNDFIVIE 159

Query: 167 LGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S   ++R   HL  P+IA+++ IA  H++ F   E+           +   G + 
Sbjct: 160 GDEYLSSAIDLRPKFHLYEPNIALLSGIAWDHINVFPTYEDYIEQFRIFVSKIVNGGILV 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N ++   + +   S     K  Y        ++ +       +   + V  +G   ++ 
Sbjct: 220 YNEEEPELKKIVENSTNPIRKHPY-----HTPEYYIE------DGETILVTPEG---DMP 265

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N+     +   +  D +   +A++ F   +G  KR +     G F +  +
Sbjct: 266 LEIFGKHNLSNLAGAKWVCQHMGVDEEDFYEAIASF---KGASKRLQKIKESGDFIVFKD 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNIS 402
            +  +P+ + A++  + +     +G++I       E+   S S + D       SL    
Sbjct: 323 -FAHSPSKVNASLKAVKE---QFQGKKIIAC---LELHTFS-SLNQDFITEYKNSLDAAD 374

Query: 403 HVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +                 A+  ++     +        L  ++++S  D  V++  S
Sbjct: 375 EAIVFYSLEAVTHKNLKPISSAIITSVFGRDDLRIITETADLENYLKTSNFDNSVLLFMS 434

Query: 452 S---NSCGFYRLINLL 464
           S         RL+N L
Sbjct: 435 SGNYGGIDLERLVNEL 450


>gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
 gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
          Length = 473

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 123/404 (30%), Gaps = 51/404 (12%)

Query: 64  GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV             + G   +PV+G  ++   L       R    A  +A+TG+ 
Sbjct: 73  GAELVVTAPGWKPDKPLFQAAGRAGVPVWGDVELAWRL-------RGPDAAPWLAVTGTN 125

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT +ML   L +     A +G+    +   +         D    EL    L     
Sbjct: 126 GKTTTVQMLAAILKAAGLRTAAVGNIGVSLLDAV---LGEEKYDVLAVELSSYQL----H 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-K 236
               +R H A +  +AP HL     +E  A+ K  ++EG         N  D   E L +
Sbjct: 179 WAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEG--NRVACVYNVADKATEDLVR 236

Query: 237 AKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMA 293
           A     G + + ++ G    +   + +          +     + +  V   +    H  
Sbjct: 237 AADVEEGCRAVGFTLGTPGPSQLGVVEGLLVDRAFVADRHKNAQELAEVSDVNPPAPHNI 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +              L  F        R     +      +D+S   N  + 
Sbjct: 297 ANALAAAALARAFGVPAAAVRDGLRSFT---PDAHRIAHVADVDGVAYVDDSKATNTHAT 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +A+++             I  +      G          AE L         L G     
Sbjct: 354 EASLASYES---------IVWIAGGLAKGATFDELVAGAAERLRGA-----VLIGADRAL 399

Query: 414 LKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVV 449
           ++DAL R         +D              +     GD V++
Sbjct: 400 IRDALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLL 443


>gi|257470791|ref|ZP_05634881.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 435

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 119/337 (35%), Gaps = 38/337 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K+ IIA+TG+ GKTTT   +T  L          G+          L     D+D+ + 
Sbjct: 89  IKSKIIAVTGTNGKTTTTSKITELLQYAGYKAEYAGNIGVSY---AELLLKYQDLDYIVL 145

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +       +P I ++  + P HLS +  I++    K  I +   +      
Sbjct: 146 ELSSYQLENL----LDFKPWITMVINLTPDHLSRYKDIDDYYKTKFNIGKNQTEDDYFIF 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-V 284
           N D    E+++ ++  LG K   S   S+  DF     K   +         G+ +E   
Sbjct: 202 NLDSK--EVVEREALVLGKKIKISQNISEKCDFWAENGKLYGK--------DGEILECSK 251

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L       I+    +   + L      E    R     + G    I++
Sbjct: 252 LSLKGKHNLENVLFITATAEIVGISNEKIREFLYNTETIE---HRMEDFFDYGKVKFIND 308

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K A+    Q         I + G   +  +      + LA+++ + +    
Sbjct: 309 SKGTNIDSTKFAVEAFDQC--------ILICGGFDKKLDW-----VPLADLIKI-HAKET 354

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           +L G     +   L       Y  +   L   ++S L
Sbjct: 355 YLIGETAEDINRILLEKG---YDSSKIFLLRDLRSCL 388


>gi|170728854|ref|YP_001762880.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           woodyi ATCC 51908]
 gi|169814201|gb|ACA88785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella woodyi
           ATCC 51908]
          Length = 442

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 151/448 (33%), Gaps = 61/448 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-----AF--FAIKGPHYDGHDFILHAVQK 63
           L A     +  + +  +  + +DSR   P        +    +    +D   +++ A Q 
Sbjct: 12  LGATGLSVVHYLHEQGITPLVMDSRHQPPGMDELKRLYPEVELLTGGFDC-RYLVQASQI 70

Query: 64  GAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                + V+T  + +   + I V G  DV     +L   A    +  +I ITGS GK+T 
Sbjct: 71  IISPGIAVDTPEIRAAIDMGIEVIG--DV-----ELFARAVKDREPCVIGITGSNGKSTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++          YA  G+        L L R P D    I EL    L      TH +
Sbjct: 124 TTLVGEMARVAGLNYAVGGNIGVP---ALDLLREPRD--LYILELSSFQL----ETTHSL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +A    I+  H+  ++ +E    AK  ++     +     N +D   E     +   
Sbjct: 175 NCIVATCLNISEDHMDRYTDLEAYRQAKLSLYCQ---SKRALFNREDELTEPKDPMNQN- 230

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 SFG S   N ++ +R  K     + +   L           +G H   N+L  +
Sbjct: 231 ------SFGLSAPFNDEWGVRDGKVVHGTTEIMNLLD-------VALVGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +      D ++ I+  + F    G   R          + +++S   N  +  AA+   
Sbjct: 278 ALAYHAGVDKESMIQVATTFT---GLAHRCELVAVHNGVSYVNDSKATNVGATVAALEGF 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G   +  +             +++ +S +   G     + +   +
Sbjct: 335 SD----HLGGIILIAGGDGKGADFQPLQQ-------AIHGLSQLITLGKDGDKIAEFSEK 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +I V     M             GD+V+
Sbjct: 384 AIRV---SDMSEAVKTANELAEAGDIVL 408


>gi|308235556|ref|ZP_07666293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14018]
 gi|311114356|ref|YP_003985577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
 gi|310945850|gb|ADP38554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
          Length = 525

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 17/202 (8%)

Query: 54  HDFILHAVQKGAGLVVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           HDF          +V        T  +      +IPV    +V  A      + +  + A
Sbjct: 60  HDFSKIDWDNIDAVVTSPVFNPRTPFILEAQKRNIPVIS--EVELAWLVRVNSDKTNNPA 117

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             + ITG+ GKT+T EM +  L++       +G+    +    + A M  + D    EL 
Sbjct: 118 PWVGITGTNGKTSTTEMTSEMLTACGFDAPAVGNIGKSV----SHAAMESEHDVLCVELS 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ +R   A IT IA  HL    GIE  A  K+++F G++K   +  N  
Sbjct: 174 SFQL----HFTNSMRLDCAAITNIAADHLDWHGGIEAYAKDKSKVFNGVKK--ALVYNAQ 227

Query: 229 DSFFELLKAKSHALGIKTIYSF 250
           DS    L A +          F
Sbjct: 228 DSRVSELAANAQVEDGCKKIGF 249


>gi|42520684|ref|NP_966599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|62900687|sp|Q73GT3|MURD_WOLPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42410424|gb|AAS14533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 111/384 (28%), Gaps = 82/384 (21%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +I +TG+ GK+TT  ++   L S  K  A  G+          +  +  D +  
Sbjct: 105 KTTNQKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVP------VLDLERDAEIY 158

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L + +   I+ +  I P H+     +E   + K ++  G E     
Sbjct: 159 VIELSSFQL----ELMNEINVDISALLNITPDHIDRHGSMENYIATKLKLINGSE---VA 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF--------------------------------- 250
            +  D+     +  K     I    ++                                 
Sbjct: 212 VIGCDNEITADIFNKFTGDKIPISVTYSPMSFQCVTLESRKEKPLPTTQMTEGGARDLIS 271

Query: 251 --------------GKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                         G  +N  D  +            ++ L+ ++  +    +  ++  N
Sbjct: 272 LAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSVSDVKINLISN 331

Query: 296 M---LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                 T  +  +L  D +T I  +  F    G   R            +++S   N  S
Sbjct: 332 AENIAATYAVCKVLGVDSNTIINGIKSFS---GLRHRNELLGKIRNVFFVNDSKATNAKS 388

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + AI     I+    GR         + G  S S H           +   +L G    
Sbjct: 389 SEKAILSYENINWIAGGRS-------KKGGIESLSKH--------FTRVRKAFLIGESTE 433

Query: 413 ALKDALPRSIHVHYSETMDGLFLF 436
           A  + +   +       ++  F  
Sbjct: 434 AFANVMENKVDYVKCCNLEDAFRL 457


>gi|322515501|ref|ZP_08068487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
 gi|322118468|gb|EFX90719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
          Length = 454

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 132/396 (33%), Gaps = 31/396 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 67  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L   +      G     +     ++       F + E            +  V   P  
Sbjct: 127 ILDQNQIDT---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I     D   +          ++ 
Sbjct: 184 LIINNIEFDHADIFDDLKAIQRQFHHLIRTMPSSGCILSAAADENVQNTLKMGSYSELQF 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LMT+     
Sbjct: 244 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGEHNMHNALMTIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A +AL  F       +R          T+ D+ +  +P ++ A I  L     
Sbjct: 297 AGVSVAGACEALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATIDALRG-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LSGFHVLALKDALP 419
             E R +AVL    E    +     H  ++A  L   N   V+      + V  + D+L 
Sbjct: 352 GKEQRILAVL----EPRSNTMKMGVHKEEIALSLGDANAVFVYQPDTIPWSVSVITDSLS 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +     +S  +D L   +       D ++V  SN  
Sbjct: 408 Q--PAAWSANLDELVALVIKEAKPNDHILVM-SNGA 440


>gi|296448265|ref|ZP_06890159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
 gi|296254217|gb|EFH01350.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
          Length = 473

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 94/275 (34%), Gaps = 22/275 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    AT IAITG+ GK+TT  ++   L    K     G+    I         P +   
Sbjct: 109 RHAPGATFIAITGTNGKSTTTALIAHILRRAGKDVQLGGNIGTPILD----LEPPSEERI 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E     +     LT  + P I ++  + P H+     +++ A+ K  + +G      
Sbjct: 165 HVIECSSFQID----LTPSLAPTIGILINLTPDHIDRHGTMDDYAAVKERLVDG---ADI 217

Query: 223 IFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNAD--FQLRKWKQCSEQSWM---EVQ 275
             +  DD +   + A+        + +     ++  D  F +   K    QS     E +
Sbjct: 218 ALIGVDDVYCHAIGARLTQAHCEGQRVIPVSATRALDWGFYIESGKVIYRQSGHGPEEAE 277

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G  +       G H AQN       V     + +     L+ +    G   R      
Sbjct: 278 TLG-DLGDARALRGAHNAQNAAFAAAAVWHCGLNCEEIADGLADY---PGLPHRMEEVGR 333

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +G    I++S   N  + + A+     I     G+
Sbjct: 334 RGRVLFINDSKATNADAAEKALLSFDDIFWIAGGK 368


>gi|223984266|ref|ZP_03634411.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
 gi|223963751|gb|EEF68118.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
          Length = 438

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 99/318 (31%), Gaps = 39/318 (12%)

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            +      G+    + +   +            E+    L  +        P ++V   +
Sbjct: 126 KRPNARTAGNIG--VPLSEIVREQGDQKTDVALEVAAFQLVAMEKF----HPAVSVCMNL 179

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL  F  ++    AK  +++         +N DD     +  +   L  + + +F  
Sbjct: 180 TPDHLDYFGSLDAYYDAKMLVWKNQTGDDWFLVNLDDP---EIVKRCAELPCRRV-TFSL 235

Query: 253 SKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            + AD  +++ +    +Q    +           H  G H  QN ++   +   L  D D
Sbjct: 236 DQPADVCVKQDQVWLFDQPLFALS--------DLHLPGRHNLQNAMVAAAMAVKLGVDAD 287

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + +  F   E    R             ++S   N  +   A+    +         
Sbjct: 288 QIREGIRAFKGVE---HRIEFVAEIRGARYYNDSKGTNVDATTVALKAFEK-------PV 337

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I + G     G   ++    L  VL    ++ + + G     LK   P +I     ET+ 
Sbjct: 338 ILLAG-----GYDKKTGFDGLKPVLDR--VATMIVYGETRGQLKALRPDAI---VVETLS 387

Query: 432 GLFLFIQSSLVDGDVVVV 449
                       GD+V++
Sbjct: 388 EAVEQAYQLAKAGDIVLL 405


>gi|183982420|ref|YP_001850711.1| Mur family ligase [Mycobacterium marinum M]
 gi|183175746|gb|ACC40856.1| ligase, Mur-family [Mycobacterium marinum M]
          Length = 911

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 132/402 (32%), Gaps = 53/402 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DV GA+  +      +++  I A+TG+ GKTT   ML   L           +    I 
Sbjct: 463 RDVGGAIMDMLFPPGTQARVPIAALTGTNGKTTCSRMLAHILKMAGHVVGQTSTDAVLID 522

Query: 149 VPLTL---------ARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
             +T+         A+M      VD  + E   +  G +R         +  +  +A  H
Sbjct: 523 GNVTVKGDMTGPVSAKMVLRDPSVDIAVLE--TARGGIVRSGLGYNFCDVGAVLNVASDH 580

Query: 197 --LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
             L     ++++A  K  + E     GT+ LN DD     + A S A  +  +    + +
Sbjct: 581 LGLGGVDTLDDLARVKRVVAEVTR--GTVVLNADDEQTLKMAAFSPARQVMYVTRNPEHE 638

Query: 255 NADFQLR------KWKQCSEQSWMEVQLQGKSME-VVHHGIGY-------HMAQNMLMTL 300
                +R        +Q      + +   G  M  +    I         H  +N +   
Sbjct: 639 LVREHIRLGKLAVVLEQGVNGDQIVIYDNGTQMPLMWTQLIPATLEGKALHNVENAMFAT 698

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   L   +D     L  F     +        ++  F +I + Y  N A++ A + ++
Sbjct: 699 GMAYALGKTLDQISAGLRTFDNSFFQSPGRMNVFDEHGFRVILD-YGHNEAAVGAMVDLV 757

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQS--------------FHIDLAEVLSLYNISHVWL 406
            ++ P   GRRI  L    +  +   +               H D  + L       V  
Sbjct: 758 DRLKPR--GRRIVGLTCPGDRRDEDATAIAAKVAGHFDTYICHRD--DNLRDREPDEVPE 813

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                L  +   P +I +   E  +             D+V+
Sbjct: 814 LLRDALIAEGVAPDAISIIGEE--EQALDAALEQAQPDDLVL 853


>gi|295425114|ref|ZP_06817819.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065173|gb|EFG56076.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 459

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 116/352 (32%), Gaps = 41/352 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           S+A  + +TGS GKTTT  +    L             +G+    I   +  A      D
Sbjct: 111 SEAPYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD---D 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKT 220
             + E+    L         + P +A I  I    HL      E   +AK  +       
Sbjct: 168 ILVVEISSFQLLG----VTDIDPKVAAIIDIYHNVHLDYHKTFENYVNAKLNVTRFQNSA 223

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGK 279
                N+D    + +  K        I +F +  N AD+ +   +    QS   +++   
Sbjct: 224 DYFIANFDQ---KDILKKEKETTKAKIQTFSEKDNSADYFIGD-EYLESQSEKIMKIDD- 278

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  QN L+ + I  ++ A+ D     LS F    G   R +  +     
Sbjct: 279 -----IKLPGIHNQQNCLVAIAISKLMGAENDDIQAVLSTF---AGAKHRLQYVMTLDGR 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S + N  +   AI    Q         IA        G L + F  D    L   
Sbjct: 331 KIYNDSKSTNIEAATVAIPSFKQPEV-----LIA--------GGLDRGFTFDSLVPLFKE 377

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + L G     L DA  ++    +    T+             GDV++ 
Sbjct: 378 HVKAIVLYGETKYLLADAARKAGIKDIVIENTLQEAVPKAYELTEPGDVLLF 429


>gi|269838017|ref|YP_003320245.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787280|gb|ACZ39423.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 481

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 127/409 (31%), Gaps = 44/409 (10%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG-----ALNKLAVAA----------RL 104
           A+++ AGL +                  V +         L +   A             
Sbjct: 61  ALEELAGLPIRYVLGEHRAEDFERADLVVRNPAVPLDSPWLQRARAAGARIEMEMSLFFR 120

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
              A I+ ITG+ GKTTT  +    L   +      G+        L   R    V   +
Sbjct: 121 ACPAPIVGITGTKGKTTTATLCAGILRVARPDTVLAGNMGTSTLDALPGIRPDTPV---V 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    +  +    H + PH+AVIT I+  HL+ +  +     AK +I         + 
Sbjct: 178 IELSSWQIEGLAE--HGLSPHVAVITNISEDHLNRYPSMAAYVEAKRQIARYQGPDDWLV 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-- 282
           LN DD     L  +S + G   +  FG + +A     +     +   +  +  G  +E  
Sbjct: 236 LNRDDP----LAWESRSAGAGRVVPFGMAGDAPAGAFR-----DGDRLVWRWDGSEVELL 286

Query: 283 --VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L       +  AD       L    P      R           
Sbjct: 287 RRDEFPLPGDHAVANALAAAAAAILAGADPAQVRTGLLAATPVP---HRQEIVATIDGVC 343

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ++++    PA+  AA+              + + G   +  +L        AE  ++  
Sbjct: 344 YVNDTAATAPAAAVAALDTFRGRP------LVLIAGGAAKGADLGPMARRVAAEASAVVL 397

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +        H   L+DA    I   +  +M+            G VV++
Sbjct: 398 LDGTATPDLHAR-LRDAGAARISGPHR-SMEDAVRAAAELATPGGVVLL 444


>gi|297180054|gb|ADI16279.1| UDP-n-acetylmuramate-alanine ligase [uncultured bacterium
           HF0010_16H03]
          Length = 435

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 25/266 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
           K T+ A++G+ GKTTT  ML        K     +G  ++ I    +L          + 
Sbjct: 100 KKTVFAVSGTHGKTTTSYMLAHIFLDQGKDIGFLVGGISDDISGSASLGT----DKIFVI 155

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +   P   +I  I   H   F  +++I      + + +  +G I
Sbjct: 156 EADEYDSAFFDKRSKFIHYAPSTLIINNIEFDHADIFDDLKDIKKQFHHLLKTIPPSGNI 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
               DD   E +    +   +  I         D +++     S+    E++L GK+   
Sbjct: 216 IYFSDDINAEEVINMGNWSQLIKI--------NDCEIK-INFDSK----EIKLLGKTFSL 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG H  +N +  +         V+ +I +L  F+  +   +R     +     + 
Sbjct: 263 KNLPLIGEHNFKNYICAILAARTGGVAVEDSIISLQKFNGVK---RRLEFKGSHSNIKVY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGE 368
           D+ +  +P ++KA+   +    P  +
Sbjct: 320 DD-FAHHPTAIKASSKAIRNKFPEKK 344


>gi|323144064|ref|ZP_08078708.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Succinatimonas
           hippei YIT 12066]
 gi|322416177|gb|EFY06867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Succinatimonas
           hippei YIT 12066]
          Length = 445

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 119/357 (33%), Gaps = 42/357 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             + +  R  +   II ITGS GK+T   ++   L       A   ++ N +    +   
Sbjct: 96  GDVELFGREVTDVPIIGITGSNGKSTVTALVGYILEKAGIPSAVGANFGNAVFDIYSKRN 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIF 214
                   + EL    L      T  +     VI  ++  HL      I++   AK  IF
Sbjct: 156 -----RMYVLELSSFEL----ETTSSLHLKAGVILNVSEDHLDRYEGSIDKYRDAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +    I +N DD        ++         SFG    +  +    ++  E +++ V
Sbjct: 207 MHCDN---IIVNRDDP-------RTFPANGHYAASFGLDDLSYGR----EETPETTYLTV 252

Query: 275 QLQGKSMEVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              G+ +  V   I  G H   N L  + +   +  D +  I+AL  F    G   R + 
Sbjct: 253 --NGRRVLDVKDLIICGRHNELNALAAMALADAVGIDRNVQIEALKTF---PGLEHRCQL 307

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  +  ++S   N AS +AAI  L    P G    I + G + +  + +      L
Sbjct: 308 IRELDGVSYYNDSKATNVASAQAAIEGLCSRHPQG---IILLAGGLGKGQDFTP-LKRYL 363

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + +S       +  G     L        + H    +             G  +++
Sbjct: 364 GKEVSAM-----FCFGKDADKLLSL--DEKYTHSVLNLRQALNSAVQMARPGQAILL 413


>gi|291547126|emb|CBL20234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           SR1/5]
          Length = 451

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 115/354 (32%), Gaps = 38/354 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A    K  ++AITG+ GKTTT  +L   +   +++   +G+            R      
Sbjct: 103 AYRTGKGEVLAITGTNGKTTTTALLGKIMGDARESVFVVGNIGTAYTSKSLEMREDSVT- 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I       RP ++ I  I   HL+    +EE    K  I +      
Sbjct: 162 --VAEISSFQLETID----QFRPKVSAILNITEDHLNRHHTMEEYIRVKELITKNQGPED 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNY+D              +  +  F        +        +   + ++ + + +
Sbjct: 216 VCVLNYEDEVLRKFGENI----VPKVVYFSS-----LRKLDQGIYLDGDQIILKTEKEEI 266

Query: 282 EVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +V       +G H  +N++    +       V++  K++  F        R      + 
Sbjct: 267 PIVKTEELKILGRHNHENVMAAAAMAYYAGVSVESIRKSVCEFVAVP---HRIEYVTEKN 323

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +    I  ++        R   ++G     G   +S + +  E   
Sbjct: 324 GVAYYNDSKGTNPDAAIKGIQAMN--------RPTLLIGG----GYDKESSYDEWIESFD 371

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + ++ L G     +K A  R     +   E +             GD V++
Sbjct: 372 G-KVRYLVLIGQTKEKIKAAAERLGFTDIILCEDLKEAVRVCAEKANPGDAVLL 424


>gi|119962409|ref|YP_947468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           aurescens TC1]
 gi|119949268|gb|ABM08179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           aurescens TC1]
          Length = 524

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 104/337 (30%), Gaps = 33/337 (9%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  A      A R  +    + ITG+ GKTTT  M    L +       +G+    I  
Sbjct: 126 DVELAWRLRERAGRKTAD--WLTITGTNGKTTTVGMAESMLQAAGLKAIAVGNVGTPI-- 181

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            L   R PVD D    EL    L      +H + P  +V   +A  H+          + 
Sbjct: 182 -LDALRDPVDYDAFAVELSSFQL----HWSHSLSPVASVCLNVAEDHVDWHGSYASYLAD 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA+++E  +K      N +    E +   +  +       F  +  A   L         
Sbjct: 237 KAKVYENTQK--AAIYNAEQIETERMVENADVVEGCRAIGFTTNTPAVSMLGVVDGLLVD 294

Query: 270 SWMEVQLQGKSME-----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                + +  + E      +      HM  N L    +V     +     +         
Sbjct: 295 RAFIAERKDSAAELAAMTDLGPVAPRHMVANALAAAALVRAYGIEPAAVKQG---LVNYL 351

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R +   N      I++S   NP +  AA+S            ++  +      G  
Sbjct: 352 PGAHRIQLVANHNDVLWINDSKATNPHAASAALSAFQ---------KVVWIAGGLSKGVN 402

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 + A  L       V L G    AL+ +L R 
Sbjct: 403 YDDLVKEHAPRLKA-----VVLIGTDTEALEGSLQRH 434


>gi|182420005|ref|ZP_02951239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           butyricum 5521]
 gi|237669516|ref|ZP_04529496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376042|gb|EDT73629.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           butyricum 5521]
 gi|237654960|gb|EEP52520.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 458

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 120/354 (33%), Gaps = 51/354 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +K  I A+TGS GKTTT  +++  L          G+    +   +       D D  + 
Sbjct: 115 TKGKIYAVTGSDGKTTTTTIISKLLKEQGYNTWVGGNIGTPLFSEI---ENIKDEDKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +          IA+ T +AP HL     ++E   +K  IF    +   + +
Sbjct: 172 ELSSFQLMTMSE-----EIDIAICTNLAPNHLDMHKDMKEYVDSKKNIFLYQSENDVLVV 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EV 283
           N ++      + ++  + ++   S  K +N  +               + L+GK +  + 
Sbjct: 227 NRENEITYEFEKEAKGI-VREFSSKRKIENGAYYEDGI----------LYLEGKEVCRKE 275

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L    I +     ++   K    F   E R +  R           +
Sbjct: 276 DIVIKGMHNVENYLAAF-IATKDEVSIEVMKKVAETFAGVEHRCEFIR---ELDGVKYYN 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           +S  ++P    A +    +       + I + G            HI   E L+      
Sbjct: 332 DSIASSPTRTLAGLKAFDK-------KVILIAGGY--------DKHIPF-EPLAYEGYPY 375

Query: 401 ISHVWLSGFH-------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           I  + L G           AL++       +  + T++      +S    GD+V
Sbjct: 376 IKELILVGATSDKIEAVFKALENEKGIKTSIKRANTLEEAVSICKSIAEAGDIV 429


>gi|315928658|gb|EFV07944.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 431

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHY 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYTQFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYARLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFEGVDELIILPVYAAGEEPIELDLKAVFPKALFVE 392


>gi|322436407|ref|YP_004218619.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
 gi|321164134|gb|ADW69839.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
          Length = 478

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 113/356 (31%), Gaps = 37/356 (10%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + G+ GKTTT  ML     +  K  A          +      + M       + E    
Sbjct: 115 VAGTHGKTTTTSMLAWIYETAAKYDAKFAPSFLIGGVAENFGASFMVRATRPFLLEGDEY 174

Query: 171 HLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                      +   P  A++T +   H   +  +  + +A       + + G +     
Sbjct: 175 DTAFFDKGPKFLHYFPDAAILTHVEFDHADIYDDLNAVKTAFKRFVNLIPRRGRLVAYDG 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           +       AK+       +  +G +  + +++         +   ++  G+   E+    
Sbjct: 235 NVNVTECVAKAFCA----VERYGLAPGSYWRVTGLTADEGGTRWTLERDGEFFAELKLPM 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N     G+ +     V+   +AL+ F   +   +R          T+I++ + 
Sbjct: 291 PGEHNALNATAAAGLAAGQGVAVEAIKEALATFRSVK---RRLEVRAEVNGITVIED-FA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHV 404
            +P +++  +  L   + +   R +A+L         S +   ++ E     SL     V
Sbjct: 347 HHPTAIRETLRALK--ASYAGRRLVAILE------PRSNTLRRNVFEEALVDSLLIADQV 398

Query: 405 WLSGF------------HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            ++G                A+   L  R            +   +   L  GDVV
Sbjct: 399 VIAGVFKSESIPEHERLEPEAVAAGLRVRGTPAQVLADAGAIVKVLAPELKSGDVV 454


>gi|149924619|ref|ZP_01912973.1| cyanophycin synthetase [Plesiocystis pacifica SIR-1]
 gi|149814504|gb|EDM74091.1| cyanophycin synthetase [Plesiocystis pacifica SIR-1]
          Length = 957

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 140/447 (31%), Gaps = 65/447 (14%)

Query: 53  GHDFILHAVQKG---AGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKA 108
           G DFI   + +     G  +   +          P  G   DV G +  +       ++ 
Sbjct: 431 GIDFITPDISRSFREVGGAICEVNAAPGFRMHVAPTEGTPRDVAGPVMDMLFEPGAPTRI 490

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM--- 156
            I ++TG+ GKTT   ML   L    KT     +   +I    T+         ARM   
Sbjct: 491 PIASVTGTNGKTTVSRMLAHILKMSGKTVGLTTTDGVYIDGERTVSGDMTGPVSARMVLR 550

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEIF 214
              VD  + E   +  G +R        ++  +  +   H  L     IE++A+ K  + 
Sbjct: 551 DPSVDAAVLE--TARGGLLRAGLGYRANNVGAVLNVQADHLGLGGIDTIEQLAAVKRIVV 608

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E         LN DD     +   + A  I  +      K+A  +    +       +E 
Sbjct: 609 E--VSRDCAVLNADDEQCLKMADYTKAERIAYVTR--NPKHALVR-EHIRAGGAACVLEE 663

Query: 275 QLQGKSME-----VVHHGIGYH------------MAQNMLMTLGIVSILTADVDTAIKAL 317
            + G+ +           +  H              QN +    +  ++   +D     L
Sbjct: 664 GINGQMITLYDRGSHIPLLWTHLIPATLEGKALFNVQNAMFAALMARVMKVKIDNIRVGL 723

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F     +        +   F +I + Y  NPA++ A     + +     GRR+ VL  
Sbjct: 724 RTFDTTFFQAPGRLNVFDDLPFKVILD-YGHNPAAVGAMAETAASM--EVNGRRLCVLAA 780

Query: 378 MCEMGELSQSFHIDLAEVLSL---------------YNISHVWLSGFHVLALKDALPRSI 422
               G+      + +A+  +                  +  V  +G  + AL  A     
Sbjct: 781 P---GDRRDEDIVAIAKQAAPHFDAFIVRRDDSLRGRKVGEV--TGILMGALIGAGVSPS 835

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V   E               GD++V+
Sbjct: 836 KVEVIEDEQAAIQAALERGERGDLLVI 862


>gi|118594410|ref|ZP_01551757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
 gi|118440188|gb|EAV46815.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
          Length = 481

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 124/410 (30%), Gaps = 69/410 (16%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D+   L  +           II +TG+ GKTTT   L     S+       G+    
Sbjct: 109 VVNDIFLFLKFIEKNNHRVKNLKIIGVTGTNGKTTTCFFLEHLYKSLGVNVRVAGNIG-- 166

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIR-FLTHL--VRPHIAVITTIAPAHLSNFSGI 203
               L+   +  D+D+    +      ++  F++    V+  + ++  ++P HL     +
Sbjct: 167 ----LSPLELIDDLDYIEIIILEISSFQLLPFISKGLPVKLDVGILLNLSPDHLDIHKNM 222

Query: 204 EEIASAKAEIFEGLEKTGTIF-----LN-----YDDSFFELLKAKSHALGIKTIYSFGKS 253
           EE    KAE+        T+      LN      D SF E  +  S              
Sbjct: 223 EEYYQTKAELLR--SSKRTVVSHNLGLNTSTEFTDISFGEGFEEVSKINNNGK----SLI 276

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           K   +     K   +     V++            G H   N+   +    +L    +  
Sbjct: 277 KYRQYFQYNKKYIFDDQGFRVEIN------KLKITGGHNLLNITAGIAAFRVLGGSSNRL 330

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L+ F     R +  R           ++S   N AS  AA+          +   I 
Sbjct: 331 KNILAEFKGIPHRIEWVRLL---NDVDYFNDSKGTNVASTVAALENFRD-----KKNIIL 382

Query: 374 VLGDMCEMGELS---QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSE 428
           + G   E    S      HI         N++H+ L G      ++      +  +   E
Sbjct: 383 IAG--GESKGQSLLPLRDHIK-------RNVTHLLLIGKDAKLFEECFKDIITTQIVRYE 433

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSS--------------NSCGFYRLINLL 464
           +MD              V+++  S                  F  ++  L
Sbjct: 434 SMDDAVCHAYRFARKHGVILL--SPACSSIDMYKNYTERGNHFKEIVQRL 481


>gi|226939683|ref|YP_002794756.1| Mpl [Laribacter hongkongensis HLHK9]
 gi|226714609|gb|ACO73747.1| Mpl [Laribacter hongkongensis HLHK9]
          Length = 459

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 122/357 (34%), Gaps = 29/357 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFG----- 163
           ++A+ G+ GKTTT  ML   L +        IG    +  V   L   P     G     
Sbjct: 106 VLAVAGTHGKTTTSSMLAWILEANGLAPGFLIGGIPENFAVSARLPGEPAQEPGGESPFF 165

Query: 164 IFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V   P  A++  +   H   F+ +  I +    +   +  TG
Sbjct: 166 VIEADEYDTAFFDKRSKFVHYHPRTAILNNLEFDHADIFADLPAIETQFHHLVRTVPGTG 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N  ++    +  +        + +F     + +Q  K     +    +V L G ++
Sbjct: 226 RLVVNGREASLARVLERG---CWTPVETFAAPAGSGWQAGK---ADDDGHFDVLLDGNTV 279

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V  + +G H   N +  +            A  AL++F   +   +R     +    T
Sbjct: 280 GRVRWNLMGEHNRLNAVAAVAAARHAGVRPQDACAALAMFANVK---RRMEVKGSVNGVT 336

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLY 399
           + D+ +  +P ++   ++ L   +  G  R +AVL    E    +       AE+  SL 
Sbjct: 337 VYDD-FAHHPTAIATTVAGLR--ARVGAARILAVL----EPRSNTMKLGTMKAELPASLA 389

Query: 400 NISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               V+    G          P          +D L   + +    GD V+V  SN 
Sbjct: 390 QADRVFGYQGGLGWDLAAALAPLGSKAQSFGDLDALVAAVAAEAQPGDQVLVM-SNG 445


>gi|315927938|gb|EFV07260.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 432

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 86  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 143 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHY 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 192 AYTQFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 244 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 296

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 297 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYARLGGYKKITAIFEPHRYTRLAANL-KE 354

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 355 FAKAFEGVDELIILPVYAAGEEPIELDLKAVFPKALFVE 393


>gi|330994425|ref|ZP_08318350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconacetobacter
           sp. SXCC-1]
 gi|329758425|gb|EGG74944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconacetobacter
           sp. SXCC-1]
          Length = 450

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 82/275 (29%), Gaps = 21/275 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D       +  A    S+A    ITG+ GK+TT  +L   L+      A  G+  
Sbjct: 80  VPIVSDAELLFRAVRAAG---SRARFAGITGTNGKSTTTVLLAHMLACCGIPVAAGGNLG 136

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
                      +  D    + E+    L  +  L        A +  + P HL     + 
Sbjct: 137 PAALALP----LLPDDGVYVLEMSSYMLERLEQL----HFSAACLLNLTPDHLDRHGDMA 188

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKW 263
              +AK  +F+         L      +  +     A  ++     G   +  D+     
Sbjct: 189 GYTAAKLHVFDHQHAGDLAVLGATLPDYARIHRGLAATRVRIACVSGADVEQCDYYCTDH 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
             C     +        ++      G H  +N      +   L         AL+ F   
Sbjct: 249 ALCDHSGVI------AGLDGATDLPGTHNRENAAAATAMALHLGMPRAAVEGALATFSAL 302

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    R +     G    I++S   N  +   A++
Sbjct: 303 D---HRQKLVGRIGTVRFINDSKATNADATARALA 334


>gi|329943203|ref|ZP_08291977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|332287783|ref|YP_004422684.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|313848356|emb|CBY17359.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila psittaci RD1]
 gi|325506725|gb|ADZ18363.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|328814750|gb|EGF84740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|328915041|gb|AEB55874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
          Length = 420

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 120/380 (31%), Gaps = 66/380 (17%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             ++       IPV  V D+  A                I +TGS GKTTT   L   L 
Sbjct: 73  HPVIVEAKHRGIPV--VTDIQLAFQDPEFHRYPS-----IGVTGSAGKTTTVLFLVHLLR 125

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S+  +   +G+    I       +        + E+    L E      +     A I  
Sbjct: 126 SVGISACAMGNIGFPI------LQAMYQKGIRVVEMSSFQLAEQEI--EIPVLSAATILN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I+  HL     ++  + AK+ I + L+                      +L +    SFG
Sbjct: 178 ISENHLDYHYTLQAYSEAKSNIVKCLQS-------------------PESLWVGDGVSFG 218

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADV 310
           KS                  + + L   S       +  H   N      + + +T   +
Sbjct: 219 KS-----------YLDSTREINLVLDKGSA---LKPLYLHDRNNYCAGYALANEVTKIPL 264

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  ++A+  F        R      +     I++S     +S++ A+  + +        
Sbjct: 265 EAFLEAVLTFDKPP---HRIEYLGEKDGVRYINDSKATTMSSVEKALIAVKE-------N 314

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSET 429
            I +LG     G    S    L   L+   + H+   G     +  AL  S + +  +  
Sbjct: 315 IIVILG-----GRNKGSNFASLIPTLTQT-VKHIVAMGECRKEIAQALSSSNLPLTQARD 368

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +       QS    GDV+++
Sbjct: 369 LQEAVNVAQSIAQPGDVILL 388


>gi|188996362|ref|YP_001930613.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931429|gb|ACD66059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 465

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 151/425 (35%), Gaps = 85/425 (20%)

Query: 95  LNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPL- 151
           ++++  A R       IIAITG+ GKTTT  ++   L  I  +     G+Y       L 
Sbjct: 67  ISEIEFAYRQCNDNCEIIAITGTDGKTTTTSLIYEVLKEISDENVYVGGNYGIPFVEILD 126

Query: 152 ------------------TLARMPVDVDFG--------------IFELGMSHLGEIRFLT 179
                             +L +   D                  + EL    +    + T
Sbjct: 127 KIEEASFSYQKPLDQEDNSLGKANSDKTMNKNNISTSHVSPLIVVLELSSFQI----YST 182

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           + ++P +++I  I+  HL      +    +K ++ +  E +    LNY+D   + +K   
Sbjct: 183 NTLKPKVSIILNISTDHLDWHKKEKHYILSKLKLLKNTEFS---VLNYNDKCLKNIKG-- 237

Query: 240 HALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQG---KSMEVVHHGIGYHM 292
                K +Y F   +  +      L+++++    +   + L+    + ++V    IG+H 
Sbjct: 238 -----KNVYYFSLKELPEDVKGIYLKEYRKEDGLNVYNLVLKDDKTEEIQVKTQLIGFHN 292

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN++ T+    +L  +++  I+ +  F P      R             ++S +    +
Sbjct: 293 LQNIMATILTAYLLNVNINKVIEKIKEFKPLN---HRIEFVKEVEGVKFYNDSKSTTVQA 349

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++ AI    +       + + +LG + + G+ S+     L  +L    +S  ++ G    
Sbjct: 350 VEKAIESFDE-------KIVLILGGINKGGDFSK-----LGSLLKTKVLSA-FIIGRDKE 396

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVV----------VK--SSNSCGFYR 459
            +   +    +    E+++               VV+           K  +     F  
Sbjct: 397 QIFRMIKDYTNSIKKESLEEAVKDAFEVAKSNKAVVLFSPGCASFDMFKNYADRGNKFKE 456

Query: 460 LINLL 464
           ++  L
Sbjct: 457 IVESL 461


>gi|319786422|ref|YP_004145897.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464934|gb|ADV26666.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 462

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 98/323 (30%), Gaps = 38/323 (11%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                +    + +TG+ GK+TT  +L   L +     A  G+    +   L    +P   
Sbjct: 103 WFGEHADGRTVCVTGTKGKSTTTSLLAHLLRAGGHRTALAGNIGLPLLEVLEPQPVP--- 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +F   EL     G++        P +AV+  + P HL      +     K  +       
Sbjct: 160 EFWAIELSSYQTGDVAR--SGAHPEVAVVLNLFPEHLDWHGSEDRYIEDKLRLVTEARPR 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  LN  D     L+     L    I  F +      +     +  +  +         
Sbjct: 218 -TAVLNAADPRLAALE-----LPGSRIIWFNREDGWHLRDDALYRGDDFVFDTA------ 265

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+   L  +  L  D      A   F P      R +    +    
Sbjct: 266 ---AVPLPGRHNRGNLCAVLAAIEALGVDATPLAPAAMDFRPLP---HRLQWLGERDGIG 319

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG--ELSQSFHIDLAEVLSL 398
            +++S +  P +  AA+           G  +A+L     +G  +    +H   AE L  
Sbjct: 320 YVNDSISTTPHASLAALD-------CHRGSPVAIL-----LGGHDRGLDWHG-FAERLRA 366

Query: 399 YNISHVWLSGFHVLALKDALPRS 421
                V   G +   + + L   
Sbjct: 367 QPPKAVVTMGANGPRIHELLEGE 389


>gi|153951012|ref|YP_001397833.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|189028979|sp|A7H2V3|MURC_CAMJD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152938458|gb|ABS43199.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 431

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 128/341 (37%), Gaps = 40/341 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    IFE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLIFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYAEFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKIFGMGYHLALDASLAILAALNF-LDIETI---GARLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAVNL-KE 353

Query: 392 LAEVLSLYNISH-----VWLSGFHVLA--LKDALPRSIHVH 425
            A+      +       V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFE--GVDELVILPVYAAGEEPIEIDLKAVFPKALFVE 392


>gi|58698935|ref|ZP_00373796.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630554|ref|YP_002727345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia sp. wRi]
 gi|58534552|gb|EAL58690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592535|gb|ACN95554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia sp. wRi]
          Length = 517

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 111/384 (28%), Gaps = 82/384 (21%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +I +TG+ GK+TT  ++   L S  K  A  G+          +  +  D +  
Sbjct: 113 KTTNQKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVP------VLDLERDAEIY 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L + +   I+ +  I P H+     +E   + K ++  G E     
Sbjct: 167 VIELSSFQL----ELMNEINVDISALLNITPDHIDRHGSMENYIATKLKLINGSE---VA 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF--------------------------------- 250
            +  D+     +  K     I    ++                                 
Sbjct: 220 VIGCDNEITADIFNKFTGDKIPISVTYSPMSFQRVTLESRKEKPLPTTQMTEGGARDLIS 279

Query: 251 --------------GKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                         G  +N  D  +            ++ L+ ++  +    +  ++  N
Sbjct: 280 LAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSVSDVKINLISN 339

Query: 296 M---LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                 T  +  +L  D +T I  +  F    G   R            +++S   N  S
Sbjct: 340 AENIAATYAVCKVLGVDSNTIINGIKSFS---GLRHRNELLGKIRNVFFVNDSKATNAKS 396

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + AI     I+    GR         + G  S S H           +   +L G    
Sbjct: 397 SEKAILSYENINWIAGGRS-------KKGGIESLSKH--------FTRVRKAFLIGESTE 441

Query: 413 ALKDALPRSIHVHYSETMDGLFLF 436
           A  + +   +       ++  F  
Sbjct: 442 AFANVMENKVDYVKCCNLEDAFRL 465


>gi|149195164|ref|ZP_01872255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
 gi|149134716|gb|EDM23201.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
          Length = 408

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 123/369 (33%), Gaps = 61/369 (16%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNHIGVPLTLARMPVD 159
           L+ K   I +TG+ GKTTT  +L+  L ++       G+    +N       TL    + 
Sbjct: 51  LKLKTKFIGMTGTNGKTTTAFVLSFLLKNLGFNVVTQGTEGLYFNLEKKENKTLTTPDIF 110

Query: 160 V----------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      DF + E+    + + R     +R    ++T+ +  HL     I+E    
Sbjct: 111 TTIKRAYKYKPDFFVMEVSSHAIAQNRI--EGIRFDAKIMTSFSQDHLDYHKSIDEYKKV 168

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K   F+             D   +++  K      K  YS  +  N DF++         
Sbjct: 169 KESFFQ-------------DESVKVINGKLKMENGK--YSIIEIGNYDFKVYNKN----- 208

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               + +  K +       G     N  + L    ILT    + +   S  +  +G   R
Sbjct: 209 ----LYVLEKPIVNDIPMAGEFNKMNFSLALKTAEILTNSSFSIL--NSQLNNFKGVSGR 262

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      LI   +   P  ++  +S +       +G +I V G   +  +  +   
Sbjct: 263 MEIVSKN---PLIIVDFAHTPDGIEKVLSSV-------KGEKIVVFGAGGKRDKEKRELM 312

Query: 390 IDLA-EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGD 445
            ++A +      I++        + + + + + + + Y    +  + +   I+  L    
Sbjct: 313 GEVASKYAEFLIITNDNPRCEEPMKIANDIAKGVSIPYEIILDRKEAIKKAIK--LAKNG 370

Query: 446 VVVV---KS 451
            ++    K 
Sbjct: 371 KILFVLGKG 379


>gi|86152932|ref|ZP_01071137.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843817|gb|EAQ61027.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 431

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHY 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYTQFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFVE 392


>gi|224534651|ref|ZP_03675223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
 gi|224513899|gb|EEF84221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
          Length = 451

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 130/371 (35%), Gaps = 43/371 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  II++TG+ GK+T   +L   L          G+       PL+           I E
Sbjct: 110 KNPIISVTGTKGKSTLVSLLYRVLKKKYPKVKLGGNIGVS---PLSFFDQLDGRSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P +++IT +   H + +S  ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPILSIITNVYNDHQNYYSNFDDYIVDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    DF    +     + +   +L G   E    
Sbjct: 221 QDKAYYKYF---SKFESKAKVILFSEFNPCDFNQDIFYSNKGEVYFNDKLIGSFYESKTV 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +        L+   +   L  D++ A++ L+ F   E R +  +   N       +++ 
Sbjct: 278 LM-----TPKLIAFFVSYYLNIDLNHALQILNNFKGIEHRLEFVKLVKN---VLFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L        G    ++G     G          +++++L     + +
Sbjct: 330 STIPDSTVLSVKSLKT----NVGCINLIVG-----GTDKNLDFSSFSKIINLVKA-WILI 379

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SS-----------N 453
            G   + + + L + SI     +++     +       GD+V+   +S            
Sbjct: 380 KGSATVKIINILKKSSIQYFVFDSLKDAVNYAFKISSPGDIVLFSPASASFELFNNEFDR 439

Query: 454 SCGFYRLINLL 464
              F +L+N+L
Sbjct: 440 GLQFKKLVNML 450


>gi|260913057|ref|ZP_05919539.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632644|gb|EEX50813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
          Length = 456

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 138/399 (34%), Gaps = 37/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     + +        +   L     ++A++G+ GKTTT  ML+ 
Sbjct: 67  MVIVGNAMKRGNPCVEYVLENRLPYTSGPQWLHDNLLRDRWVLAVSGTHGKTTTTGMLSW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I      +    D D+ + E            +  V   P  
Sbjct: 127 ILDKCGLR---PGFLIGGISGNFGTSARLGDSDYFVIEADEYDTAFFDKRSKFVHYNPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I    D++  +           K 
Sbjct: 184 LIINNIGFDHADIFDDLKAIQRQFHHMIRTIPANGRILSVADEANVKATLEMG-CWSEKQ 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSI 305
                K  +A+ +LR      + +   V   G+ +  VH + +G H   N LM +     
Sbjct: 243 FLGSDKEWHAE-RLRN-----DSTVFAVFHNGEKVAEVHWNVVGQHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   +  A +ALS F   +   +R          T+ D+ +  +PA + A ++ L     
Sbjct: 297 VGVSIQDACEALSTFVSPK---RRLEVKGEVNGVTVYDD-FAHHPAEILATLTALRD-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWL-----SGFHVLAL-KD 416
            G  R +AVL    E    +     H D  E+        HV++      G+ V+ +  D
Sbjct: 352 GGGARILAVL----EPRSNTMKMGIHKD--EIAPALGRADHVFIFQPENIGWDVVDIVSD 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +  ++   ++  +D L   I S     D ++V  SN  
Sbjct: 406 CVQPAV---WNMNLDKLVDLIVSEAKPKDHILVM-SNGS 440


>gi|113971482|ref|YP_735275.1| UDP-N-acetylmuramate [Shewanella sp. MR-4]
 gi|113886166|gb|ABI40218.1| UDP-N-acetylmuramate [Shewanella sp. MR-4]
          Length = 465

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 121/360 (33%), Gaps = 41/360 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G +   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFHHLIRTVPGQGKVIWP 223

Query: 227 YDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            D    +           +T      + G    A           +    EV   G+S  
Sbjct: 224 ADSHAVKQTIEMGCWSEQETFHIAEVTKGWHAKA--------LSDDCHEFEVFFDGESQG 275

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V+    IG H  +N LM +     +      AI AL+ F P +   +R          ++
Sbjct: 276 VLEWALIGQHNIENALMAIAAARHVGVKPSAAIAALTRFVPPK---RRLELLGTVHGVSV 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAEVLS 397
            D+ +  +P ++    + +  I       +I ++     +   S +     H D     S
Sbjct: 333 YDD-FAHHPTAIA---TTIKGIRAKVGQSKITIV-----LEPRSNTMKSGVHKDTLAH-S 382

Query: 398 LYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +      +L     +   +K+A+  + I V     +D +   + +S   GD +VV  SN 
Sbjct: 383 MLQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVSASAKAGDTIVVM-SNG 441


>gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 472

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 116/385 (30%), Gaps = 42/385 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     +PV+G  +    L         R  A  +A+TG+ GKTTT  ML   L +    
Sbjct: 86  AAAEAGVPVWGDVE----LAWRLRGDDGRKPAPWLAVTGTNGKTTTVRMLASILRAAGLR 141

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+    +   +       + D    EL    L         +R H A +  +AP H
Sbjct: 142 TEAVGNIGVSLLDAVV---GETEYDVLAVELSSYQL----HWAPSLRAHSAAVLNLAPDH 194

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI-YSFGKSK 254
           L     +E  A+ K  ++EG   T     N  D   E L  ++    G + I ++ G   
Sbjct: 195 LDWHGSMEAYAADKGRVYEG--NTVACVYNVADPATEDLVREADVEEGCRAIGFTLGAPG 252

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDT 312
            +   +            +   Q + +  V        H   N L    +          
Sbjct: 253 PSQLGVVDGILVDRAFVADRHKQAQELAEVSDVDPPAPHNIANALAAAALARAFGVQPAA 312

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               L  F        R     +      +D+S   N  + +A+++             I
Sbjct: 313 VRDGLRAF---RPDAHRIEHVADLDEVRYVDDSKATNTHATEASLAAYDS---------I 360

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD- 431
             +      G       I  A+ L       V L G     +++AL R         +D 
Sbjct: 361 VWIAGGLAKGATFDELVIGAAKRLR-----GVVLIGADRALIREALTRHAPEVPVVDLDR 415

Query: 432 -------GLFLFIQSSLVDGDVVVV 449
                              GD V++
Sbjct: 416 TDTGAMSEAVARAAELARPGDTVLL 440


>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
 gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
          Length = 447

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 118/346 (34%), Gaps = 42/346 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +IAITGS GK+T  E++     S   T A  G+          L  +   VD  + E
Sbjct: 109 QAPLIAITGSNGKSTVTELVGSMAQSAGMTVAIGGNLGTP-----ALEILAPAVDLYVLE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +RP  A +  I+  H+  +S IE  A+AKA      E      +N
Sbjct: 164 LSSFQL----ETVQSLRPKAATVLNISEDHMDRYSSIEAYAAAKAAAISHSE---VAVIN 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
             D     + +           +FG  S  A + L +         + +  QG+ +  V 
Sbjct: 217 RQDKRVAAMLSDGER------VTFGSDSSEAGYGLERL-----AGTVWLTAQGERLIEVS 265

Query: 285 -HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L +        + ++ AL  F    G   R      +     I+
Sbjct: 266 DLKICGEHNWLNALAALALADAAGIAREASLAALKEF---AGLPHRTEWVAERNGVIYIN 322

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +  AA++   Q         + + G + +  + +        +         
Sbjct: 323 DSKATNVGATAAAVTGFDQ-------PLVLIAGGVGKGQDFAP------LKTSLKARAKA 369

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L G     +  AL   +  +   +M             GDVV++
Sbjct: 370 VVLLGHDAELIGQALGDEVAQYRVASMSEAVSRATELAECGDVVLL 415


>gi|224373699|ref|YP_002608071.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
 gi|223588723|gb|ACM92459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
          Length = 410

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 101/317 (31%), Gaps = 65/317 (20%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----- 158
           L  K   I ITG+ GKTTT  +L   L     +    G+   ++      A+        
Sbjct: 51  LTLKTKFIGITGTNGKTTTAFVLGHLLQQAGYSVGIQGTEGFYLNGEKIEAKTLTTPPIF 110

Query: 159 ---------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                    + DF I E+    + + R     +     ++T+ +  HL     +EE    
Sbjct: 111 TTIKRAVKYEPDFYIMEVSSHAIVQQRI--EGIEFTAKILTSFSQDHLDYHKTMEEYKRV 168

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K   F              D   ++   K      K                  K  S  
Sbjct: 169 KESFFR-------------DETVKVFNGKLLVKNEKC-----------------KVKSGG 198

Query: 270 SWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +  +      K +       G     N  + L   S+LT +   +    S+F    
Sbjct: 199 YEFNLNCKNLYVLEKPIVDDIPMAGEFNKMNFSLALKTASLLT-NSSLSTFNFSLFEGVP 257

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +     +++    +ID  +   P  M+  +S +       EG++I V G   +  + 
Sbjct: 258 GRME----IVSKKPLVIID--FAHTPDGMEKVLSAV-------EGKKIVVFGAGGDRDKD 304

Query: 385 SQSFHIDLAEVLSLYNI 401
            +    ++A+  + Y I
Sbjct: 305 KRHLMGEVADKYAEYII 321


>gi|296136985|ref|YP_003644227.1| UDP-N-acetylmuramate [Thiomonas intermedia K12]
 gi|295797107|gb|ADG31897.1| UDP-N-acetylmuramate [Thiomonas intermedia K12]
          Length = 498

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 130/413 (31%), Gaps = 80/413 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV-----DFG 163
            +A+ G+ GKTTT  ML   L          IG      G    L            + G
Sbjct: 105 TLAVAGTHGKTTTTSMLAHILEVAGLNPGFLIGGVPLDFGASARLGGDKTPHPNPPRERG 164

Query: 164 IFELGMSHLGEIRFLTHLV-------------------------------RPHIAVITTI 192
             +L  S  GE    +                                  RP  AV+  +
Sbjct: 165 GSDLASSARGEGESPSSTAWGRLGGGGFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNL 224

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F  +  I +    +   + ++G + +N      + + A+        +  F  
Sbjct: 225 EFDHADIFPDLAAIETQFHHLVRTVPRSGQLVVNARSDALQRVLARG---CWSEVVRFDD 281

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +N       W     +   EV+L+GK + EV     G H   N L  +          D
Sbjct: 282 DENG------WSAQGGEQQFEVRLRGKRVGEVRWSQTGAHNRSNALAAIAAAQHAGVFAD 335

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----SPHG 367
            A  AL  F    G  +R       G   +ID+ +  +P ++   I+ L       S   
Sbjct: 336 EACAALCSFQ---GVRRRMELRGAAGGVQVIDD-FAHHPTAIATTIAGLRHRMQADSHAA 391

Query: 368 EGRRIAV---------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            GR +AV         LG M  +   +          LS  ++S  +  G      +   
Sbjct: 392 SGRILAVFEPRSNTMKLGAMKALLPGA----------LSGADLSFGYAGGLGWNLTEALQ 441

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
           P        + +  L   + ++   GD V+V  SN  GF     +L++ L   
Sbjct: 442 PLGDKAQAFDDLGALVAAVAAAARPGDRVLVM-SNG-GFGGVHDKLLDALQAR 492


>gi|298293101|ref|YP_003695040.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Starkeya novella
           DSM 506]
 gi|296929612|gb|ADH90421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Starkeya novella
           DSM 506]
          Length = 460

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 88/274 (32%), Gaps = 32/274 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
                AITG+ GK+TT  +L   +    +     G++   I         P      + E
Sbjct: 113 HPPFAAITGTNGKSTTTALLAHLMKVGGRDAQIGGNFGPAILG----LEPPKPGRVYVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                +     L   + P + ++  ++P HL     +E  A+ K  +   +E  GT  + 
Sbjct: 169 CSSYQID----LAPSLDPAVGILLNLSPDHLDRHGTMEHYAAVKERLVAQVEAGGTAVIG 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------KS 280
            DD +   +  +  A G   +           ++   ++ +   W++             
Sbjct: 225 VDDEWSRAIADRVEAAGRNVV-----------RISVRERLAGGIWLDGDTLNVTKNATTE 273

Query: 281 MEVVHHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +   GIG     H AQN          L    +     +  F    G   R       
Sbjct: 274 FTLSLAGIGSLRGAHNAQNAAAAFAAARALGLAPEVIATGMRSF---PGLAHRMEEVRTI 330

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           G    +++S   N  + + A++    I     G+
Sbjct: 331 GKVLFVNDSKATNADAAERALTSFEDIFWIAGGK 364


>gi|319791692|ref|YP_004153332.1| UDP-N-acetylmuramate [Variovorax paradoxus EPS]
 gi|315594155|gb|ADU35221.1| UDP-N-acetylmuramate [Variovorax paradoxus EPS]
          Length = 463

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 113/345 (32%), Gaps = 24/345 (6%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+ G+ GKTTT  ML   L    K     G     + +   ++    D    + E  
Sbjct: 112 HVLAVAGTHGKTTTTSMLAWVLEQGGK---APGFLVGGVPLDFGVSARLGDGAAFVIEAD 168

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  AV+  +   H   F  +  I      +   +  TG + +N
Sbjct: 169 EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLVRTVPGTGRLVVN 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             +   + + A+    G+     FG           W+        +V  QGK +  V  
Sbjct: 229 ATEESLQRVLAQGCWSGLAR---FGAGGE-------WQASGSHDAFDVLRQGKKVGRVDW 278

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +  +     +      A +AL  F       +R          T+ D+ 
Sbjct: 279 ELSGLHNQMNAMAAIAAADHVGVAPADAARALGSFRNVR---RRMELRGTVDSITVYDD- 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNIS 402
           +  +P +++  +  L +       +   +L    E    +    +  A++   L   ++S
Sbjct: 335 FAHHPTAIRTTLDGLRKKLDDAGKQSERILAA-LEPRSNTMKLGVMAAQLPWSLESADLS 393

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +G    A     P       +  ++ L   I ++   GD +
Sbjct: 394 FCHTAGLDWDAAAALAPMGDRAQVAGAIEPLVAQITAAARPGDHI 438


>gi|229552075|ref|ZP_04440800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539491|ref|YP_003173990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314508|gb|EEN80481.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151167|emb|CAR90139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus Lc 705]
          Length = 459

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 101/326 (30%), Gaps = 32/326 (9%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + L+     +A   + N  I V     +   D D  + EL    L  I+ L     P
Sbjct: 129 LIGLMLNQQWPHHA-FDAGNIGIPVSQVAQKAGKD-DTIVAELSSFQLCGIKTL----HP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL          +AK  I           +N+D      L  +S A   
Sbjct: 183 HIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQA--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  F + + A  +           W+                G H  +N L  +    
Sbjct: 240 -QIVPFSRKQAAGARASLID-----GWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAK 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D   + L  F   +    R +         + ++S   N  +   A++   Q  
Sbjct: 294 LKGVSDDAIREVLRTFSGVK---HRIQYLETINGRRVYNDSKATNVEAATVALNAFQQ-- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
                  I  L    + G       +D    L   ++  + + G     +        + 
Sbjct: 349 ------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTAPLMAKIAKEAGVP 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V  +E +         +   GDV+++
Sbjct: 398 VQKTENVMTAVPLAYEASRPGDVILL 423


>gi|166713309|ref|ZP_02244516.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 452

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 138/413 (33%), Gaps = 42/413 (10%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +    +   A  VVV      S G+ ++                +A ++      +A+ G
Sbjct: 54  YAPSNISPDATDVVVG--NALSRGNPAVEAVLDASRRYTSGAQWLAEQVLPGRDTLAVAG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           + GKTTT  +L+  L +  +     IG      GV   L +        + E        
Sbjct: 112 THGKTTTTTILSYLLEAAGRAPGFLIGGVAEDFGVSARLGQG----REFVVEADEYDTAF 167

Query: 175 IRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
               +  V  RP +A++  +   H   F  +  I      +   +   G + +N +D+  
Sbjct: 168 FDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPARGRLIVNGEDAHL 227

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYH 291
             + A         +  FG   + D+  R     ++ S   V  +G  +  V    +G H
Sbjct: 228 AEVLAMG---CWTPVERFGFDASLDWSARLI--AADGSAFAVLHRGAEVGHVQWPLLGRH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  L  V  +  D  T + AL+ F   +   +R     +    T+ D+ +  +P 
Sbjct: 283 NVLNGLAALAAVHAVGVDPATLMPALAHFQSVK---RRLEVIGSARGITVYDD-FAHHPT 338

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFHIDLAEVLSLYNISHVW 405
           ++    + L  +       R+ V   M        +G  +Q+         SL++   V 
Sbjct: 339 AIA---TTLQGLRARVGAARVVV--AMEPRSNSMRLGAHAQAL------APSLHDADAVV 387

Query: 406 LSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                     DA+P           ++ +  L   +      GD VV   SN 
Sbjct: 388 FL-HRPELAWDAVPIIAQVRGEARVAQDVAILLRTLGEIAQPGDHVVFM-SNG 438


>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL1A]
          Length = 469

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 100/299 (33%), Gaps = 40/299 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TL 153
            ++ +A    +    I ITG+ GKTT   ML   L          G+    +       +
Sbjct: 106 GEVELAWERLTHIPSIGITGTNGKTTVTNMLNHILKLNNLNTDMGGNIGKALSKIALENM 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                ++++ + EL    +      +  V P I + TT  P HL   + IE     K  +
Sbjct: 166 KNNNQELNWLVLELSSFQIEG----SPKVAPTIGIWTTFTPDHLERHNDIESYFKIKRSL 221

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              LEK+     N DD F       S    +      G ++ + +        SE     
Sbjct: 222 ---LEKSSIRIYNSDDQFLS-----SKRKELPKGIWVGTNQQSFY--------SEYQKFW 265

Query: 274 VQLQGKSMEV--------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           +  +G   E         +    G H  QN+L+ +     +  D  +  K++  F     
Sbjct: 266 IDQKGYIFEDKKQLFHSSILKIPGKHNLQNLLLVIAAAREIGLDDSSIAKSIKSFRSIP- 324

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              R          +  ++S   N  S   +I+ L  +        I + G + + G+ 
Sbjct: 325 --HRLEYLGKINNLSFYNDSKATNFDS---SITGLKSVPHPI----ILLAGGIQKKGDF 374


>gi|325918708|ref|ZP_08180805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325918916|ref|ZP_08180987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534850|gb|EGD06775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535075|gb|EGD06974.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 376

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 107/328 (32%), Gaps = 34/328 (10%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L S     A +G+    +   L     P    +   EL     GE+       RP
Sbjct: 40  LLAHLLRSAGHRTALVGNIGQPLLEVLAPQPPPA---YWAIELSSYQTGEVGR--SGARP 94

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  + P HL            K  +           LN  D     L+     L  
Sbjct: 95  QLALVLNLFPEHLDWHGDEARYVRDKLSLVTEGRPR-IALLNAADPLLRGLQ-----LPE 148

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  F  +     +        E++  +               G H  +N+   L  + 
Sbjct: 149 SEVRWFNHADGWHLRG-DVVYRGERAIFD--------TANVPLPGEHNRRNLCAVLAAIE 199

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      A   F P      R +   +    + +++S +  P +  AA++  +Q  
Sbjct: 200 ALGLDSAALAPAALSFRPLP---NRLQLLGSVDGISYVNDSISTTPHASLAALACFAQ-- 254

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RR+A+L    + G   Q F   +A+      I  +  +G  + AL + L  +   
Sbjct: 255 -----RRVALLVGGHDRGLDWQDFAAHMAQQA-PLEIVTMGANGPRIHALLEPLAEAGRF 308

Query: 425 --HYSETMDGLFLFIQSSL-VDGDVVVV 449
             H +  ++      + +L   G VV++
Sbjct: 309 GLHAATDLEHAMQLARDALGTQGGVVLL 336


>gi|289625653|ref|ZP_06458607.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647292|ref|ZP_06478635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330865952|gb|EGH00661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 449

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 122/381 (32%), Gaps = 39/381 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  ML   L          G     I     ++    
Sbjct: 94  WLADHVLQDRWVLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLG 150

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  F + E            +  V  RP  A++  +   H   F  +  I      +   
Sbjct: 151 DTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRT 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     +     +        ++T       +   +Q R      + S  EV  
Sbjct: 211 IPSEGLVIHPATEPALSRVIEMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLF 263

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+    V     G H   N L TL     +       ++ALS F   +   +R      
Sbjct: 264 EGQLQGCVEWDMTGQHNVANALATLAAARHVGVVPSLGVQALSAFKSVK---RRMEKVAE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLA 393
               T+ D+ +  +P ++   +  L      G+   IAV+    E    S     H D  
Sbjct: 321 VRGITIYDD-FAHHPTAIATTLDGLR--KKIGDAPIIAVI----EPRSNSMKLGAHRD-G 372

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              S+     V        G+ + A       S+     ++++ +   + S    G  +V
Sbjct: 373 LPESVSQADQVVWYAPPNLGWDLAATVAG--GSVPSTVCDSLEAIIARVHSQARPGTHIV 430

Query: 449 VKSSNSCGF----YRLINLLL 465
           +  SN  GF     +L   L 
Sbjct: 431 IM-SNG-GFGGLHGKLAEALK 449


>gi|117919243|ref|YP_868435.1| UDP-N-acetylmuramate [Shewanella sp. ANA-3]
 gi|117611575|gb|ABK47029.1| UDP-N-acetylmuramate [Shewanella sp. ANA-3]
          Length = 465

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 124/356 (34%), Gaps = 33/356 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G +   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFHHLIRTVPGQGKVIWP 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
            D    +           +T ++   +K   +  +      +    EV   G+S  V+  
Sbjct: 224 ADSHAVKQTIDMGCWSEQETFHTAEVTKG--WHAKAL--SDDCHEFEVFFDGESQGVLEW 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H  +N LM +     +      AI AL+ F P +   +R          ++ D+ 
Sbjct: 280 ALIGQHNIENALMAIAAARHVGVKPSAAIAALTRFVPPK---RRLELLGTVHGVSVYDD- 335

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAEVLSLYNI 401
           +  +P ++    + +  +       +I ++     +   S +     H D     S+   
Sbjct: 336 FAHHPTAIA---TTIKGMRAKVGQSKITIV-----LEPRSNTMKSGVHKDTLAH-SMLQA 386

Query: 402 SHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              +L     +   +K+A+  + I V     +D +   + +S   GD +VV  SN 
Sbjct: 387 DEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVSASAKVGDTIVVM-SNG 441


>gi|327194624|gb|EGE61474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CNPAF512]
          Length = 470

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 17/241 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L S        G+    IG  +     P    + + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILKSAGYDTQLGGN----IGTAVLTLDPPKPERYYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +    +
Sbjct: 168 ECSSYQID----LAPTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG---SDVAVV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DDS   L+  +    G+K +    ++  AD       K           L    ++ +
Sbjct: 221 GIDDSHSALIADRIQRAGVKVVRISRRNVVADGIYAEGTKLVQAAGG--AMLPFADLDGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H AQN    +     +    D     L+ F    G   R +    +G    +++
Sbjct: 279 QTLRGIHNAQNAAAAIAACLAVGVSADDIRAGLASF---PGLKHRMQPVGRRGRVVFVND 335

Query: 345 S 345
           S
Sbjct: 336 S 336


>gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
 gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
          Length = 509

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 121/382 (31%), Gaps = 51/382 (13%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D+  A      A     +  +I  TG+ GKTTT  M    L +       +G+    I  
Sbjct: 120 DIELAWRVQNRAGHTAPQWLVI--TGTNGKTTTVGMTESILRADGLKAIAVGNVGTPILD 177

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +   R PVD D    EL    L      TH + P  +V+  +A  H+    G E   +A
Sbjct: 178 AV---REPVDYDVFAVELSSFQL----HYTHTISPVASVVLNLAEDHVDWHDGFENYKAA 230

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA+I+E  +       N  D     +   +  +       F     A   +   +     
Sbjct: 231 KAKIYERTQI--AAIFNAADEATIKMVEDADVVEGCRAIGFTTDTPAVSMVGVVEGLLVD 288

Query: 270 SWMEVQLQGKSMEVV-HHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                + +  ++E++    IG     H A N      +        +     L  F   +
Sbjct: 289 RAFLEERKTSAVELIALKEIGEIVPRHTAANAAAAAALTRAYGVHPEAVAAGLKNFDSGD 348

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R +    +     +++S   NP +  A+++  +++     G     L    E G+L
Sbjct: 349 ---HRIQAVARKDDILWVNDSKATNPHAADASLAAFTRVVWIAGG-----LSKGVEYGDL 400

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG----------- 432
                  +A+         V L G     L++AL   +  V   +  D            
Sbjct: 401 -------VAKHAQRLA--KVLLIGTDTAGLREALAAHAPEVEVIDITDSAQDSEGAAPSG 451

Query: 433 ------LFLFIQSSLVDGDVVV 448
                            GD V+
Sbjct: 452 AQVMTRAVSKAAEIAQAGDTVL 473


>gi|119504381|ref|ZP_01626461.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2080]
 gi|119459889|gb|EAW40984.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2080]
          Length = 459

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 123/365 (33%), Gaps = 25/365 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +IA++G+ GKTTT  ML   L          +G      G+  TL       DF + E  
Sbjct: 107 VIAVSGTHGKTTTTSMLAWILEYAGMAPGFLVGGVPADFGLSATLG----GSDFFVVEAD 162

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P   VI  +   H   F  +  I +    +   +   G I   
Sbjct: 163 EYDTAFFDKRSKFVHYKPRTLVIANLEYDHADIFPDLAAIETQFHHLVRCVPSQGLII-- 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +             SFG   ++ +++R      EQ  + V  +G +  V   
Sbjct: 221 --HGRAPAIDQVFSKGVWSPRQSFGTETDSQWKVRAMSLAGEQFEL-VSPEGATEVVTWS 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG H   N    +         +  A +AL  F   +   +R       G   + D+ +
Sbjct: 278 LIGQHNLLNACAAVAAAHHAGVPLPVAARALENFSGVK---RRLELRGTPGGIAIFDD-F 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVW 405
             +P ++   +  +      G GR +AV+    E    + +  H  +A   +      V+
Sbjct: 334 AHHPTAIAMTLEAMRDRIGVGSGRLLAVI----EPRSATMKDGHHGVALAAATAAADEVF 389

Query: 406 LSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                 L+  L   +         + +D L   +  +   GD VVV  SN  GF  +   
Sbjct: 390 WYEPPGLSWPLAALVAGQTGQSVWQHIDTLVDAVAVTATAGDAVVVM-SNG-GFGGIHEK 447

Query: 464 LLEEF 468
           LL+  
Sbjct: 448 LLQCL 452


>gi|332525742|ref|ZP_08401889.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109299|gb|EGJ10222.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 861

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 118/387 (30%), Gaps = 52/387 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------ 155
           A    +  ++A+TG+ GKTT   ++    ++         +    +      +       
Sbjct: 463 AGQDGRIPVVAVTGTNGKTTVSRLIAHLFNAAGYKVGMTNTDGVWVDGHQIDSGDCSGPK 522

Query: 156 ------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEI 206
                    D +  + E   +  G +R      R  +AV+T +    HL     + +E++
Sbjct: 523 SARNVLAHPDTEAAVLE--TARGGMLREGLGFDRCQVAVVTNVGAGDHLGLNYITTVEDL 580

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---------- 256
           A  K  I + + ++G   LN  D     +    H  G   +++      A          
Sbjct: 581 AVLKRVIVQNVAESGYAVLNAADPITLQMAQ--HCPGGVILFAVDGHLPAMVAHRAQGGR 638

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              +      +       ++  + + +  +G      +N L  +          D     
Sbjct: 639 TVFVDGDAIVAVNGSARARVPLREVPLTRNGTIGFQVENALAAVAAAWGCGLSFDAVSAG 698

Query: 317 LSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           L+ F         R+     +G   + D  Y  N  +M+A +  +  +      RR  V+
Sbjct: 699 LASFVNDAHNAPGRFNVMDYRGATVIAD--YGHNADAMRALVGAVEAMPAQ---RRSVVI 753

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVH 425
               +  +        +           V L           G  +  L++ L  +    
Sbjct: 754 SAAGDRRDEDIREQTQIL----GAAFDEVLLYQDAAQRGRADGEVIALLREGLRGAPRTR 809

Query: 426 YSETMDG---LFLFIQSSLVDGDVVVV 449
             E + G          SL  GD+ +V
Sbjct: 810 RVEEIHGEFVAIDQALESLQPGDLCLV 836


>gi|308271438|emb|CBX28046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [uncultured
           Desulfobacterium sp.]
          Length = 468

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 115/389 (29%), Gaps = 44/389 (11%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +     PV        ++      A    K  I+AITG+ GKTTT  +    L       
Sbjct: 78  VPHTIEPVVNAAKNGASIIGEIELASRFIKEPIVAITGTNGKTTTTILTGKMLEESGLKV 137

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+  N +   +         D  + E+    L  I + +    P ++V+  I   HL
Sbjct: 138 FVGGNIGNPLIDYVDSGN---KADIVVAEISSFQLDTIEYFS----PKVSVLLNITEDHL 190

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             +      A +K  IF   +       N  D    L+           I  F      +
Sbjct: 191 DRYPDFNAYAKSKMRIFINQKDGDYAVFNASDKHISLMAKDIKC----RILPFFNHNTLN 246

Query: 258 FQLRKWKQCSEQSWMEV----------QLQGKSMEVV-------HHGIGYHMAQNMLMTL 300
                 K   ++    +              K+ E          H +G H  +N+    
Sbjct: 247 DYNEFAKIADDRIVFNINNIAAINSDATNPDKTFEKEFSLPFSGIHLLGKHNMENVAAAT 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                   ++     AL  F        R             ++S      S+  A+ V 
Sbjct: 307 LATLAAGGNIAGIKSALEKFKSLP---HRIEHVATINGVEYYNDSKATTVDSVIKALEVF 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++         I ++G   +    +      L    +  ++  + L G     +K +L  
Sbjct: 364 NK-------PVILIMGGRNKGSNFA------LLADAAKKHVKRLILIGESKEEIKSSLGG 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    S++++   +         +VV++
Sbjct: 411 IVETTLSDSLENAVVTASKFAETDEVVLL 439


>gi|309792364|ref|ZP_07686832.1| UDP-N-acetylmuramate/alanine ligase [Oscillochloris trichoides DG6]
 gi|308225585|gb|EFO79345.1| UDP-N-acetylmuramate/alanine ligase [Oscillochloris trichoides DG6]
          Length = 469

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 127/405 (31%), Gaps = 61/405 (15%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA- 138
            L IP+   DD    L ++    R      ++A+ GS GKTTT  M+ +AL         
Sbjct: 81  KLGIPILKRDD----LWRVWSQQRP-----VVAVAGSHGKTTTSAMVALALRGGGLNPGF 131

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            IG+    +G   T           + E       E       + P +AVIT +   H  
Sbjct: 132 LIGAEVPDLGGNAT---WGDPAAPLVIEA-----DEYDRAFLSLTPALAVITNVEWDHPD 183

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--- 255
            +   E   +A     + +     + L  D      L       G      +G  +    
Sbjct: 184 IYPSAEAYTAAFTSFAQQVGGPRRLVLGSDGPHLSDL-------GDLEPVLYGIEERLAT 236

Query: 256 ---------ADFQLRKWKQCSEQS------WMEVQLQGKSMEVVHHG--IGYHMAQNMLM 298
                     D+                    + Q  G+    V      G H  +N L 
Sbjct: 237 DPVSCRLAPFDWTASGVTGIPGGGVSFDLWRFDRQRMGQRRMGVLELAVAGAHNVRNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L + ++L  D+  A+ ALS F    G  +R+      G   ++D+ Y  +P+ ++A   
Sbjct: 297 ALAVAALLGVDMQGAVAALSSF---RGSARRFELKGEAGGVVVVDD-YGHHPSEVQA--- 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLYNISHVWLSGF--HVLAL 414
            L+        RRI                    +      L  +  V+ +     V AL
Sbjct: 350 TLAAARMRYPARRIVAYLQPHTFSRTEALLDAWPEACRDADLVLVGDVYAAREEGDVAAL 409

Query: 415 KDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              L        I   YS  ++     +   +  GD+V+   +  
Sbjct: 410 AQRLTERISAAGIEARYSGNLEASSAALIRLVQAGDLVLTLGAGD 454


>gi|240143954|ref|ZP_04742555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203987|gb|EEV02272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|291539527|emb|CBL12638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 401

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 102/344 (29%), Gaps = 58/344 (16%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDV 160
              + +  +I ITG+ GK+TT  ML   L +   +    +G+        L       + 
Sbjct: 81  FLQQFRDQVIGITGTKGKSTTSAMLYTVLKACSGRPVLLLGNIGQP---CLDYFEEVTED 137

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              ++E+    L         V PHIA+   +   HL  +  +E+   AK+ I    +  
Sbjct: 138 TIIVYEMSCHQLAH-----TNVSPHIAIFLNLYEEHLDYYGTVEKYFEAKSHIAAYQKSG 192

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              F+                                       Q   ++   V  Q K 
Sbjct: 193 DYFFV----------------------------------GENVPQIDTKAQRTVLHQPKG 218

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H   +      +  +L  + +  +K+++ F   EG   R +         
Sbjct: 219 VHYELKLAGEHNQYDAQFVERVAELLGCEKEAVLKSMADF---EGLPHRLQYVGTYRGVR 275

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             D+S +  P   +AAI+    I       +  ++G M             L   +  + 
Sbjct: 276 YYDDSISTIP---EAAINAAMSIPDA----KTVLIGGMDRGINYDL-----LVAFIREHK 323

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                 +      +   +    +  Y+E ++            G
Sbjct: 324 EFQFICAYASGKRIFGEVGDCENCVYAEDLEQAVEAAVQMTEPG 367


>gi|254520318|ref|ZP_05132374.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914067|gb|EEH99268.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
          Length = 874

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 132/389 (33%), Gaps = 55/389 (14%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----- 155
                    +I+ITG+ GKTTT  +++  LS +        +   +I      +      
Sbjct: 470 YNDRPYNIPVISITGTNGKTTTTRVISHTLSKMGYCVGMTSTSGIYINDECIDSGDDTGF 529

Query: 156 -------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEI 206
                  +  DVD  + E   +  G I+         +AVIT I   HL       +EE+
Sbjct: 530 DSAKAVLLNHDVDVAVLE--TARGGMIKKGLAYDLADVAVITNIREDHLGIDGVDSMEEL 587

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----QLRK 262
              K+ + E +++ G + LN DD + + +  +  A     I  F K  N       ++  
Sbjct: 588 CYVKSLVGEAVKEDGYVVLNADDYWSKSILNRIKA----NIIFFSKDSNNPLLKQSKISN 643

Query: 263 WKQCSEQSWMEVQLQGKSM--------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                E   + V  +GK           +   G      +N+L   G +  +  D     
Sbjct: 644 ISVYLENDDIVVSNKGKEYVICGIKEVPITLDGKLTFNIENILAICGALVGMGIDYCMIK 703

Query: 315 KALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             ++ +     +   R+ C    G   ++D  Y  N     + +S + +I+       I 
Sbjct: 704 NGITTYLLNSHKNSGRFNCYDINGINVILD--YGHNIDGYNSVLSAVKEINSGMLYGVIG 761

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIH 423
           + GD             ++ ++ S Y + ++ +           G     + D +     
Sbjct: 762 IPGDRTNGTA------KEIGKISSKY-LDYIIVKEDKDLRGRKQGEVAELIVDGITEDSD 814

Query: 424 VHYSE---TMDGLFLFIQSSLVDGDVVVV 449
               E   + +  F    +    GD V+V
Sbjct: 815 GKKYEVILSEEDAFEKALNMAKRGDTVIV 843


>gi|238927325|ref|ZP_04659085.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
 gi|238884607|gb|EEQ48245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
          Length = 469

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 80/284 (28%), Gaps = 32/284 (11%)

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           ++   TH    HI     I P H+     +E   + K ++F        + LN DD    
Sbjct: 183 QMEATTHF-HAHIVAELNITPDHIVRHGSMEVYQAMKEKLFAAQTAEDYLVLNADDPHTR 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  ++             ++ A  +              V +            G H  
Sbjct: 242 GMAERAAGRVCLFSRREELAEGACVRADGMIVIRWDGAEHVLIPADE----LGIPGAHNV 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N+L    +              L  F   E    R          +  ++S   N  S 
Sbjct: 298 ENVLAASAMALFAGVTPAEMRPVLRAFKGVE---HRIEFVRALAGVSYYNDSKATNTDSA 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
             A+          +G  I + G    + ++GE  +  H  +           + L G  
Sbjct: 355 IKALEAF-------DGHIILIAGGDDKLTDLGEFMELVHARV---------DELILVGDA 398

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              F   A    +P +        M+      +    +G +V++
Sbjct: 399 AERFAAAARDAGIPEAQIHRVGYHMEKAVQLARELAAEGQIVLL 442


>gi|311748591|ref|ZP_07722376.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
 gi|126577115|gb|EAZ81363.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
          Length = 450

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 119/354 (33%), Gaps = 36/354 (10%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            A   S   +IAITG+ GKTTT  +    L +        G+        L    +  D 
Sbjct: 95  FAFRYSSGKVIAITGTNGKTTTTLLTYHLLKNAGLDVGLAGNVGKSWAAQL----LEGDH 150

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
           D+ + E        I       +P +A++T I P HL  +   ++    +K  +F+ +  
Sbjct: 151 DWWVIECSSFQ---IDGFV-CFKPAVALLTNITPDHLDRYEYKVDNYIQSKFGLFKNMSD 206

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  N  D   E +  K+ ++  KT +    S                 ++  QL  K
Sbjct: 207 EDQVIFNQTDPLTE-IGLKTLSVKPKTYWFSSTSN------INNGGSLNGEFLHWQLDDK 259

Query: 280 SMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +++    +   G H  QN L    I  ++    DT  ++L  F        R       
Sbjct: 260 VVQIPLSAMSLQGEHNIQNALCAGLIALLVGVKKDTIQQSLGSFTNAP---HRMELVREI 316

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  +   A+           G            G    + +  + + +
Sbjct: 317 EGVKFINDSKGTNVEATAYALDAFQNPLIWIAG------------GVDKGNDYQTV-KSI 363

Query: 397 SLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  +   G     LK A  P    +  ++ +     + Q   V GDVV++
Sbjct: 364 VEEKVKCLICLGKDNEKLKKAFHPLVGEIKETQDIKEAVRWGQLLAVPGDVVLL 417


>gi|150014999|ref|YP_001307253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           beijerinckii NCIMB 8052]
 gi|189082873|sp|A6LPL7|MURD_CLOB8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149901464|gb|ABR32297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 458

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 112/352 (31%), Gaps = 47/352 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           ++  +  ITGS GKTTT  +++  L          G+    +   +       D D  + 
Sbjct: 115 TRGKVYGITGSDGKTTTTTIISKLLEGQGYKTWVGGNIGTPLFSEI---ENIHDEDKVVL 171

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L     +T      +AV T ++P HL     ++E   AK  IF      G + +
Sbjct: 172 ELSSFQL-----MTMTQEIDVAVCTNLSPNHLDMHKSMQEYIDAKKNIFIYQNSNGLLVV 226

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EV 283
           N ++        ++       +  F   +     L             + L+ K +  + 
Sbjct: 227 NRENEITHGFIKEAKG----NVKEFSSKRE----LIDGAYYKNGI---LYLEDKEVCKKD 275

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L    + +     V+   K    F   E    R             +
Sbjct: 276 DIVIKGMHNVENYLAAF-LATKDDVSVEVMKKVAETFAGVE---HRCELVREIDGVKYYN 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-IS 402
           +S  ++P    A +    +       + I + G   +        +         Y  I 
Sbjct: 332 DSIASSPTRTLAGLRAFDE-------KVIVIAGGYDKNIPFEPLAYE-------GYPYIK 377

Query: 403 HVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + L G     +KD            I+++  E+++      +S    GD+V
Sbjct: 378 ELILMGATKHKIKDVFDNLENEKGIKININMVESLEEAVRLAESIANQGDIV 429


>gi|305431918|ref|ZP_07401085.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter coli JV20]
 gi|304445002|gb|EFM37648.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter coli JV20]
          Length = 432

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 124/324 (38%), Gaps = 36/324 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              + A+ G+ GK+TT  +L   L         IG+     G  +    +  +    +FE
Sbjct: 101 DKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM----IYKESQNLVFE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +        P++A++T     HL ++    E++       E L+      +N
Sbjct: 154 ADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHHAYTEFLDTAKIRVIN 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D F +  K +S  L     Y     KN    +  +K     +  E++  G   E    
Sbjct: 207 AEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TSFELKDLG---EFKVF 255

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G+GYH+A +  + +        D++T     +     +G  KR+          LID+ Y
Sbjct: 256 GMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFDILHADENLVLIDD-Y 310

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISH 403
             +P  +KA +S   + +  G  ++I  + +      L+ +   + A+    +    I  
Sbjct: 311 GHHPTEIKATLSAAQEYARLGGYKKITAIFEPHRYTRLATNL-KEFAKAFEGVDELIILP 369

Query: 404 VWLSGFHVLA--LKDALPRSIHVH 425
           V+ +G   +   LK   P+++ V 
Sbjct: 370 VYAAGEESIELDLKAVFPKALFVE 393


>gi|170079000|ref|YP_001735638.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
 gi|169886669|gb|ACB00383.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
          Length = 897

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 114/350 (32%), Gaps = 46/350 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLTLAR 155
           S+  IIA+TG+ GKTTT  +         K      +   +I            P + A 
Sbjct: 486 SRIPIIALTGTNGKTTTTRLTAHIYRQTGKVVGYTSTDGVYIGDYLAQKGDNTGPQSAAM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R      R  + V+  +A  HL   + + IE++A  K  I
Sbjct: 546 ILQDPTVEVAVLESARGGILRAGLAFDRCDVGVVLNVAADHLGLGDINTIEQMAQVKGVI 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E +   G   LN DD     +  K        +  F    +    L   ++    +  +
Sbjct: 606 AETVSPDGYAVLNADDPLVAAMAEKVRG----KVTYFSMQPDNPLVLEHIRRGGLAAVYD 661

Query: 274 ---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL----------TADVDTAIKALSVF 320
              + L     ++    + +       M   +++              D++   + L  F
Sbjct: 662 NGYLTLLEGEWKLQVEHVKHAPVTMGGMAPFMIANALAACLAAFAQGVDIEHIRQGLRTF 721

Query: 321 HPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
            P   +   R           L+D  Y  NPA  +A          +  G RI V+G   
Sbjct: 722 KPSAAQTPGRMNLFDLGTHHALVD--YAHNPAGYEAV----GAFVKNWPGERIGVVGGP- 774

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH 423
             G+      I L  + +      + +       G H   + D + + I 
Sbjct: 775 --GDRRDEDLILLGRIAAAV-FDRIIVKEDDDKRGRHAGEVADLIRQGIQ 821


>gi|85708883|ref|ZP_01039949.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
 gi|85690417|gb|EAQ30420.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
          Length = 474

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 123/379 (32%), Gaps = 42/379 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GK+T   M+   ++   +    +           +          G     
Sbjct: 118 HSVAVGGTSGKSTVTGMIAWIMAEAGRDPTVMNGAVMKNFADGS--NPFASARMGSGRSF 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S + E      L RP + V+  ++  H      IEE+        + +  +    +N+D
Sbjct: 176 VSEVDESDGSIALYRPSVGVLLNVSLDH----KSIEELRQLFG---DYVAISDRAVINFD 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGK-SKNADFQLR--KWKQCSEQSWMEV--QLQGKSMEV 283
           +     L  +     +K + SF    ++AD  +     +Q +      V      +   +
Sbjct: 229 NEEARFLAER-----VKNVVSFAVHDQSADITVEPESIEQDALGIRAAVIDNRTREVFPL 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H   N L  +   S    +V +A+  L  F    G  +R+           + 
Sbjct: 284 ILPMPGMHNLSNALAAIAAASASGIEVRSAVYVLKDF---AGLARRFDVVGTSASGITVI 340

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMG-ELSQSFHIDLAEVLS 397
           + +  NP    A +  L       EGR IA       G + +MG EL+++F  +L     
Sbjct: 341 DDFGHNPEKCAATLRTLKAT----EGRVIAFFQPHGYGPLKQMGHELAETFAKELGADDI 396

Query: 398 LYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 V+  G          ++A+ +         +    +     I      GD +V+
Sbjct: 397 TIMCDPVYFGGTVDRSEGTERIIAMIE--EHGGTAEHIPEREACGDRIIEIASPGDRIVI 454

Query: 450 KSSNSCGFYRLINLLLEEF 468
             +           + E  
Sbjct: 455 MGARDDTLSTFARSIFERL 473


>gi|148545836|ref|YP_001265938.1| UDP-N-acetylmuramate [Pseudomonas putida F1]
 gi|148509894|gb|ABQ76754.1| UDP-N-acetylmuramate [Pseudomonas putida F1]
          Length = 449

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 119/369 (32%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGDTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPSEGLVI--- 218

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                E    +   +G  T + + G+      +L       + S  EV  +G+   VV  
Sbjct: 219 -HPTTEQALERVIGMGCWTPVQTTGEGGQWQARL----LSPDGSRFEVLFEGEVQGVVDW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I  LS F   +   +R          T+ D+ 
Sbjct: 274 ALTGQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVK---RRMEKVAEVQGVTIYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      GE   IAV+    E    S     H D     S+ +   
Sbjct: 330 FAHHPTAIATTLDGLR--KRVGEAPVIAVI----EPRSNSMKLGAHRD-GLPESVNDADQ 382

Query: 404 VWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V       L       A    +    +++++ +   I+     G  VV+  SN  GF   
Sbjct: 383 VIWYAPANLGWDLAATAAQCKVPSVVADSLEAIIERIKGQARPGTHVVIM-SNG-GFGGL 440

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 441 HGKLAEALK 449


>gi|194468379|ref|ZP_03074365.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
 gi|194453232|gb|EDX42130.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
          Length = 456

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 119/350 (34%), Gaps = 42/350 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++++TGS GKTTT  +    + +    +    + N  I        +  D D  + 
Sbjct: 110 FDGHLVSVTGSNGKTTTTTLT-QLMIAENAKHQVKYAGNIGISFSKIAEDLGPD-DTLVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L         + PHIA+IT I   HL      E   +AK  I     K   + +
Sbjct: 168 ELSSFQLLG----APTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVI 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSM- 281
           N+D   ++ +  +S A    TI  F           +  +  + S++E   +  +G+ + 
Sbjct: 224 NWDRDEWQKIAQRSQA----TIVPFS----------RLNKSHDGSYVEDGMIYWRGQEVM 269

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  IG    +N L  +    +     D   K L+ F    G   R +  +      
Sbjct: 270 PTKDIRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFS---GVRHRLQYVMEYQERL 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S + +  + + A+   +        R + +L    + G   +       + +    
Sbjct: 327 FYNDSKSTDIEATEVALQGFN--------RPVILLAGGLDRGYTFERLVPYFKKHVKAM- 377

Query: 401 ISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + G     +KD      + V  SE               GDV+++
Sbjct: 378 ----IVFGECKDKMKDVGNQAGVPVVESENAITAVPEAWKLSEPGDVILL 423


>gi|90418196|ref|ZP_01226108.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337868|gb|EAS51519.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 470

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 27/246 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L+   +     G+    IGV +     P      + 
Sbjct: 112 PEAPFVAITGTNGKSTTTALIAHCLAHAGRDVQLGGN----IGVAVMTLAPPAPERHYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P I ++  + P HL     +   A+ KA +  G   +    +
Sbjct: 168 ECSSYQID----LAPTIEPSIGLLLNLTPDHLDRHGSMSSYAAVKARLVAG---SQLAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIY---SFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGK 279
             DD     +  +  + G   +    + G      F  R   +  E    +  ++   G 
Sbjct: 221 GVDDPHCRQIADELESEGHTVVRISQTDGLDAGVGFDGRMLHRRMEGRPEASFDLSAIG- 279

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  QN    + + + L    +  +   +      G   R       G  
Sbjct: 280 ------SLRGRHNGQNAAAAVAVFTALGLSDEEIV---AGLESFPGLAHRMEEVGRAGSV 330

Query: 340 TLIDES 345
             +++S
Sbjct: 331 LFVNDS 336


>gi|114046326|ref|YP_736876.1| UDP-N-acetylmuramate [Shewanella sp. MR-7]
 gi|113887768|gb|ABI41819.1| UDP-N-acetylmuramate [Shewanella sp. MR-7]
          Length = 465

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 121/360 (33%), Gaps = 41/360 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I      +   +   G +   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFHHLIRTVPGQGKVIWP 223

Query: 227 YDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            D    +           +T      + G    A           +    EV   G+S  
Sbjct: 224 ADSHAVKQTIEMGCWSEQETFHIAEVTKGWHAKA--------LSDDCHEFEVFFDGESQG 275

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           V+    IG H  +N +M +     +      AI AL+ F P +   +R          ++
Sbjct: 276 VLEWALIGQHNIENAMMAIAAARHVGVKPSAAIAALTRFVPPK---RRLELLGTVHGVSV 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAEVLS 397
            D+ +  +P ++    + +  I       +I ++     +   S +     H D     S
Sbjct: 333 YDD-FAHHPTAIA---TTIKGIRAKVGQSKITIV-----LEPRSNTMKSGVHKDTLAH-S 382

Query: 398 LYNISHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +      +L     +   +K+A+  + I V     +D +   + +S   GD +VV  SN 
Sbjct: 383 MLQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVSASAKAGDTIVVM-SNG 441


>gi|254450302|ref|ZP_05063739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
 gi|198264708|gb|EDY88978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
          Length = 465

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 109/348 (31%), Gaps = 37/348 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IA+TGS GK+TT  ++   L    +     G+    +           D +  + EL
Sbjct: 120 PKVIAVTGSNGKSTTSALIHHILEHAGRPAQLAGNIGRGVLD----LDEAHDGEVIVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P +AV T ++P HL   +G+    +AK  +F          +  
Sbjct: 176 SSYQTDLARALT----PDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPD-RAVIGV 230

Query: 228 DDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SM 281
           D+     +  + S       +      +  D     W   + + ++    + +      +
Sbjct: 231 DEMEGRYIANQLSEGPSDDRVIRVSAGQKID--GIGWSVFARKGFLSEYRKWRQVGSIDL 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +    G H  QN          L         AL  F   +G   R +    +     
Sbjct: 289 RAISGLPGVHNHQNACAAYAACRALGIGPRVIEAALISF---KGLPHRSQLIAEKVGVRY 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  +   A++  S++     G                      L  +L    +
Sbjct: 346 VNDSKATNVDAAAKALAAFSKVRWICGG----------------LEKEGGLDALLPAPTV 389

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ G    A    L + ++V     M        +    GD V++
Sbjct: 390 VKAYVIGREAAAFAMKL-KGLNVEVCGDMATAVAKAGAEAEAGDTVLL 436


>gi|46199028|ref|YP_004695.1| UDP-N-acetylmuramate-alanine ligase [Thermus thermophilus HB27]
 gi|46196652|gb|AAS81068.1| UDP-N-acetylmuramate-alanine ligase [Thermus thermophilus HB27]
          Length = 446

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 114/367 (31%), Gaps = 60/367 (16%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTH 180
           ML   L             +  + +   LA +P +   G    + E+  S       L  
Sbjct: 115 MLAAILLEAG--------LDPWVFLGGELALLPGNARPGRGPRVAEVDESDP-----LFR 161

Query: 181 LVRPHIAVITTIAPAHLS--------NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            VR  +AV T +   H++            +E +  A      G +   T+ +   D   
Sbjct: 162 EVRVSVAVATNLEADHVAPPGERAPNYHESLEALKEAMRGFLAGAK---TVVVPAMDP-- 216

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYH 291
             L A +  L  +           +    K       +    V  +G   EV     G H
Sbjct: 217 -GLLALTEGLPRRL-----FGPGGEVWAEKVDLSPSGASFRLVHREGPLGEVHLRVPGRH 270

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        L A  +   + LS F    G G+R+      G   ++D+ Y  +P 
Sbjct: 271 NVHNALAAALAALALGASPEAISRGLSRF---PGVGRRFERVGEVGGAWVVDD-YAHHPT 326

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSG 408
            ++A +           GRR+ V      +   +Q      A+ L   +   +  V+ +G
Sbjct: 327 EVQATLEA-----ALLSGRRVRVFFQPHRL-LRTQELWEAFAQALKGAHEVVVLPVYTAG 380

Query: 409 FHVLALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                  +AL   I     +          +    + +++    D+++   +       L
Sbjct: 381 ERGRESPEALSDRIAKRLEDLGRPARRMDKEEALAYARATARPEDLLLFMGAGDVTL--L 438

Query: 461 INLLLEE 467
              L+ E
Sbjct: 439 ARRLVHE 445


>gi|71891927|ref|YP_277657.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|122063236|sp|Q493Q3|MURD_BLOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71796033|gb|AAZ40784.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 440

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 130/348 (37%), Gaps = 38/348 (10%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             + A IIAITGS GK+T  ++++             G+    +     L+ +       
Sbjct: 101 REATAPIIAITGSNGKSTVTQLVSRMARIAGWHVGVAGNIGVPV-----LSLLNKSYQLY 155

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
           I E+    L      T+ +R   A I  ++  H+ ++  G+++   +K  I++       
Sbjct: 156 ILEISSFQLD----TTYSLRAIAAAILNVSEDHMDHYPGGLKQYWFSKQRIYKN---AKI 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +N  D                   SFG++++ AD+ L+ +K  +        +   S 
Sbjct: 209 CVMNALD-----FLTIPIYHEYDYCISFGENEDSADYYLKYYKGHTWIVAYNEYVLNCSE 263

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +++ I Y    N L  L +  I+      ++K L  F    G   R +        + 
Sbjct: 264 MRINNRINY---INALSALALSDIIKIPRSVSLKVLCQFS---GLAHRCQLIYKNHGVSW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N ++ K AI+ L        G    +LG   ++ + S   H     ++  + I
Sbjct: 318 INDSKATNVSATKEAINNLK-----LCGTLHLILGGDGKLADFSSLKH-----LIKQHEI 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            H++  G   L L         V  + TM      I   +   D+V++
Sbjct: 368 -HLYCFGKDGLLLTTLGFS--DVILTNTMIQAMRIINRRIKAKDIVLL 412


>gi|302188879|ref|ZP_07265552.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. syringae 642]
          Length = 449

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 122/370 (32%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
            +     +        ++T       +N  +Q +      + S  EV  +G+    V   
Sbjct: 222 TEPALARVIEMGCWTPVQT-----TGQNGQWQAQLL--SEDGSRFEVLFEGEPQGTVDWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGQHNVANALATLAAARHVGVVPSLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDASIIAVI----EPRSNSMKLGAHRD-GLRESVSQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAG--GTVPAQVCDSIEAIIDQVKSQAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALK 449


>gi|26987285|ref|NP_742710.1| UDP-N-acetylmuramate [Pseudomonas putida KT2440]
 gi|24981930|gb|AAN66174.1|AE016245_3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas putida KT2440]
          Length = 449

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 118/369 (31%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    + +    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSASARLGDTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPSEGLVI--- 218

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                E    +   +G  T + + G+      +L       + S  EV  +G+   VV  
Sbjct: 219 -HPTTEQALERVIGMGCWTPVQTTGEGGQWQARL----LSPDGSRFEVLFEGEVQGVVDW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I  LS F   +   +R          T+ D+ 
Sbjct: 274 ALTGQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVK---RRMEKVAEVQGVTIYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      GE   IAV+    E    S     H D     S+ +   
Sbjct: 330 FAHHPTAIATTLDGLR--KRVGEAPVIAVI----EPRSNSMKLGAHRD-GLPESVNDADQ 382

Query: 404 VWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V       L       A    +    +++++ +   ++     G  VV+  SN  GF   
Sbjct: 383 VIWYAPANLGWDLAATAAQCKVPSVVADSLEAIIERVKGQARPGTQVVIM-SNG-GFGGL 440

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 441 HGKLAEALK 449


>gi|264680224|ref|YP_003280134.1| UDP-N-acetylmuramate [Comamonas testosteroni CNB-2]
 gi|262210740|gb|ACY34838.1| UDP-N-acetylmuramate [Comamonas testosteroni CNB-2]
          Length = 472

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 117/375 (31%), Gaps = 50/375 (13%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  +     ++A+ G+ GKTTT  MLT  L          +G      GV   L    
Sbjct: 102 WLAEHVLRGRHVLAVAGTHGKTTTTSMLTWVLECAGLQPGFLVGGVPLDFGVSARLGAAQ 161

Query: 158 V---------DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
                     D    + E            +  V  RP  AV+  +   H   F  +  I
Sbjct: 162 RPAAGPGPVGDEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAI 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 +   +  TG +  N      E L           + SFG +      +  +   
Sbjct: 222 ERQFHHLIRTVPSTGRVVSNG---LEESLTRVLAQGCWSEVRSFGSA------VSDFSAD 272

Query: 267 SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + S   V  +G+ + ++     G H   N L  +     L    + A +ALS F   + 
Sbjct: 273 GDPSDFAVLHRGRKVAQLRWSLTGVHNQLNALAAIAAADHLGVSAEVACEALSRFQNVK- 331

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV---------LG 376
             +R           + D+ +  +P +++  +  L +     E R +AV         LG
Sbjct: 332 --RRMELRGTVNGIEVYDD-FAHHPTAIRTTLDGLRR-KLGAEARILAVFEPRSNTMKLG 387

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----ALPRSIHVHYSETMDG 432
            M      S          L   ++     +G    A +      +        +  ++ 
Sbjct: 388 TMKSQLPWS----------LESADLVFCHTAGLDWDAAEALESMGVGPGQRAQVAGDIET 437

Query: 433 LFLFIQSSLVDGDVV 447
           L   I + +  GD +
Sbjct: 438 LIAQISAVVRPGDHI 452


>gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 856

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 139/398 (34%), Gaps = 56/398 (14%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+  +   A    +  ++A+ G+ GKTTT  +++  L           S   +I     
Sbjct: 455 DAIVSMMFEAGNDGRIPLVAVAGTNGKTTTVRLISHILGCQGLRVGMTNSDGVYIQGKRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +  DVD  +FE   +  G +R      R ++AV+T I    HL  
Sbjct: 515 DTGDCSGPKSARNVLLHPDVDAAVFE--TARGGVLREGLAFDRCNVAVVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              S +E+++  K  + + +  +G   LN  D     +          ++  F + ++  
Sbjct: 573 NYISTVEDLSVVKRVVVQNVALSGVAVLNAADPMSAAMADICPG----SVTFFAQDRSHP 628

Query: 258 FQLRKWKQCSE------------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  Q               ++  E +++   + +  +G+     +N + ++  V  
Sbjct: 629 VMAAHRAQGKRVVYVEGNQVVACENTFEQRVELSHIPITRNGVIGFQIENAMASIAAVWA 688

Query: 306 LTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           L  D DT  + L+ F         R+     +G   + D  Y  NP ++ A IS +  + 
Sbjct: 689 LGVDWDTIRRGLASFVNDAATAPGRFNFFDYRGASVIAD--YGHNPDAILALISAVQNMP 746

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                +R+ V+    +  +       ++   +       V L           G  +  L
Sbjct: 747 AK---KRMVVISGAGDRRDEDIRLQTEILGDV----FDEVILYQDQCQRGRADGEVLSLL 799

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L  +     ++ ++G         + L+ GD+ ++
Sbjct: 800 RAGLINAKRAKITDEINGEFLAIDTALARLMPGDLCLI 837


>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 439

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 119/345 (34%), Gaps = 47/345 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A +I ITGS GKTT   ++     +   +YA  G+        L L   P +    I EL
Sbjct: 109 AKVIGITGSNGKTTVTTLVGEMAKACGCSYAVGGNIGVP---ALDLLLEPKE--LYILEL 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      TH ++   A    I+  H+  +S +E    AK +++   +++  +  N 
Sbjct: 164 SSFQL----ETTHSLQCTAATCLNISEDHMDRYSDLESYRQAKLKLY---KQSKMVLFNR 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH- 286
           +D       A +         SFG            +  +      + + G S  +    
Sbjct: 217 ED-------ALTVPNNPTNQESFGLDAP--------EMDAWGISGGMIVHGSSQIMAVSD 261

Query: 287 --GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N++  + + +    + D  I+    F    G   R          T +++
Sbjct: 262 VALVGSHNHANIIAAMALATAAGIERDFQIEVAKTFS---GLAHRCEVVAEIAGVTYVND 318

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +  AAI  LS+      G  I + G   +  +              L  +S +
Sbjct: 319 SKATNIGATVAAIDGLSE----HLGELILIAGGDGKGADFKPLE-------PVLEKVSQL 367

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +    P +I V    TM    L        GD+V++
Sbjct: 368 IVLGKDADKIAALKPEAIKVT---TMAEAVLKANELATAGDIVIL 409


>gi|254784797|ref|YP_003072225.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Teredinibacter turnerae T7901]
 gi|237687325|gb|ACR14589.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Teredinibacter turnerae T7901]
          Length = 477

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 95/267 (35%), Gaps = 15/267 (5%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  L     ++ ++G+ GKTTT  MLT  L      +   G     +      +    
Sbjct: 110 WLAENLLRGKWVLGVSGTHGKTTTATMLTWILEYA---HMAPGYLIGGVPGNFATSARLG 166

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           + DF + E            +  V  +P   VI  +   H   F  +  I +    +   
Sbjct: 167 ESDFFVIEADEYDTAFFDKRSKFVHYQPRTLVINNLEYDHADIFPDLAAIQTQFHHLLRT 226

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     D+  E +  +      +T      + NAD+ +   ++ +  +   V  
Sbjct: 227 VPNNGLVISPAGDTAVEQVITRGCWTPRQTT---ALAANADWLIA--ERDAAGTRFTVAF 281

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G+ + E+     G H  +N L  +     +    + A  AL  F+  +   +R    ++
Sbjct: 282 GGQVVGEISWSLTGSHNMRNALSAMAAARHVGVVPELACAALCEFNGVK---RRMEVRVD 338

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ 362
               T+ D+ +  +P ++   +  L  
Sbjct: 339 LPSVTVYDD-FAHHPTAIATTLEGLRA 364


>gi|58584765|ref|YP_198338.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|75497798|sp|Q5GSC8|MURD_WOLTR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58419081|gb|AAW71096.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 498

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 120/386 (31%), Gaps = 78/386 (20%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ +TG+ GK+TT  ++   L S  K  A  G+    I        +  D +  + E
Sbjct: 111 NQKIVGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVPI------LDLEKDAEIYVIE 164

Query: 167 LGMSHLGEI---------------------------------------RFLTHLVRPHIA 187
           +    L  I                                       + +  +++  I+
Sbjct: 165 ISSFQLELINMPAVIPVHDHTFFSGSQYRAAWMIKRVSEMTKKMTEVTKRMAGMIKVDIS 224

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  I   H+     +E   + K+++  G   +    +  D+     +  K    G K  
Sbjct: 225 VLLNITLDHIDRHGSMENYIAVKSKLIGG---SKVAVIGCDNEITADIFNKF--TGNKIP 279

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIVSIL 306
            S  +S      L   K+ +E   + ++L+  ++      I     A+N+  +  +  +L
Sbjct: 280 ISGVRS------LLDDKKGAEIQEISLKLENHNLSASDAKINLTSNAENIAASCAVCKLL 333

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  T I  +  F    G   R            +++S   N  S K AI     I   
Sbjct: 334 KVDSSTIIDGIKSFS---GLKHRNELLGKIENVLFVNDSKATNAESSKKAILSYKNIYWI 390

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVH 425
             GR         E G  S S H           I    L G         +   + +V 
Sbjct: 391 VGGRS-------KEGGIESLSKH--------FARIRKALLIGESTEVFASTMENKVDYVR 435

Query: 426 YSETMDGLFLFIQSSLVDGD--VVVV 449
                D   L  + ++   +   +++
Sbjct: 436 CCNLEDAFRLAFEEAIKSKEKTTILL 461


>gi|299533097|ref|ZP_07046482.1| UDP-N-acetylmuramate [Comamonas testosteroni S44]
 gi|298718874|gb|EFI59846.1| UDP-N-acetylmuramate [Comamonas testosteroni S44]
          Length = 472

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 123/387 (31%), Gaps = 56/387 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPV--------- 158
            ++A+ G+ GKTTT  MLT  L          +G      GV   L              
Sbjct: 112 HVLAVAGTHGKTTTTSMLTWVLECAGLQPGFLVGGVPLDFGVSARLGAAQRPAAGPGPVG 171

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D    + E            +  V  RP  AV+  +   H   F  +  I      +   
Sbjct: 172 DEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLIRT 231

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  TG +  N      E L           + SFG +      +  +    + S   V  
Sbjct: 232 VPSTGRVVSNG---LEESLTRVLAQGCWSEVRSFGSA------VSDFSADGDPSDFAVLH 282

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +GK + ++     G H   N L  +     L    + A ++LS F   +   +R      
Sbjct: 283 RGKKVAQLRWSLTGVHNQLNALAAIAAADHLGVSAEVACESLSRFQNVK---RRMELRGT 339

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV---------LGDMCEMGELSQ 386
                + D+ +  +P +++  +  L +     E R +AV         LG M      S 
Sbjct: 340 VNGIEVYDD-FAHHPTAIRTTLDGLRR-KLGAEARILAVFEPRSNTMKLGTMKSQLPWS- 396

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLV 442
                    L   ++     +G    A +      +        +  ++ L   I + + 
Sbjct: 397 ---------LESADLVFCHTAGLDWDAAEALESMGVGPGQRAQVAGDIETLIAQISAVVR 447

Query: 443 DGDVVVVKSSNSCGFY----RLINLLL 465
            GD +V   SN  GF     +L+  L 
Sbjct: 448 PGDHIVCM-SNG-GFGGIHAKLLQALK 472


>gi|255994322|ref|ZP_05427457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
           saphenum ATCC 49989]
 gi|255993035|gb|EEU03124.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
           saphenum ATCC 49989]
          Length = 451

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 137/415 (33%), Gaps = 37/415 (8%)

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            YD   +    +   A  + V +  V     +   V  + D    +      A   +K  
Sbjct: 47  KYDIKVYAGEDIDVSAYDLAVISPGVDPETEI---VRKLKDAGAEIISELELAYRYAKGK 103

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IAITG+ GKTTT  +      +        G+    +   L       +  + + E+  
Sbjct: 104 FIAITGTNGKTTTTTLAGEIFKNAGFDVRICGNIGRPVSESL---ENSNEDTYFVTEVSS 160

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  I       +P I++I  I   HL     +E   +AK  +FE  ++  ++  N DD
Sbjct: 161 FQLEAISKF----KPFISIILNITEDHLDRHKTMENYIAAKCRVFENQDERDSLIYNADD 216

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI 288
                    S AL  K   S    +     L+  K         +V    K +    +  
Sbjct: 217 EGVAKCAHGSQAL--KYAISLKNPQKNGAYLKDGKLILAIDGRTQVLCDAKDV----NLF 270

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN+L       +  A +D+    +  F   E R +    A        I++S   
Sbjct: 271 GEHNIQNILAASLAALLAGASIDSIGNTVKKFKAVEHRLEYVDTAC---GVKYINDSKGT 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +   AI  L        G    + G   +  + S     + A       +  ++L G
Sbjct: 328 NVDASTIAIKAL-------PGGIHLIAGGYDKGADFS-----EFARGFDG-KVKALYLFG 374

Query: 409 FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
                 +  +  +     +    T+        SS   GD+V++  +S S   Y+
Sbjct: 375 ATKERFEKEVKHAGFEGRISVCNTLRECVEKASSSAASGDIVLLSPASASWDMYK 429


>gi|294341158|emb|CAZ89559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Thiomonas sp. 3As]
          Length = 498

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 130/412 (31%), Gaps = 76/412 (18%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV-----DFG 163
            +A+ G+ GKTTT  ML   L          IG      G    L            + G
Sbjct: 105 TLAVAGTHGKTTTTSMLAHILDVAGLNPGFLIGGVPLDFGASARLGGDKTPHPNPPREQG 164

Query: 164 IFELGMSHLGEIRFLTHLV-------------------------------RPHIAVITTI 192
             +L  S  GE    +                                  RP  AV+  +
Sbjct: 165 GSDLASSARGEGESPSSTAWGRLGGGGFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNL 224

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   F  +  I +    +   + ++G + +N      + + A+        +  F  
Sbjct: 225 EFDHADIFPDLAAIETQFHYLVRTVPRSGQLVVNVRSDALQRVLARG---CWSEVVRFDD 281

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +N       W     +   EV+L+GK + EV     G H   N L  +          D
Sbjct: 282 DENG------WSAQGGEQQFEVRLRGKRVGEVRWSQTGAHNRSNALAAIAAAQHAGVFAD 335

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----SPHG 367
            A  AL  F   +   +R       G   +ID+ +  +P ++   I+ L       S   
Sbjct: 336 EACAALCSFQGVK---RRMELRGTAGGVQVIDD-FAHHPTAIATTIAGLRHQMLADSHAA 391

Query: 368 EGRRIAV---------LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            GR +AV         LG M  +   +          LS  ++S  +  G      K   
Sbjct: 392 LGRILAVFEPRSNTMKLGAMKALLPGA----------LSGADLSFGYAGGLGWNLAKALQ 441

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           P        + +  L   + +    GD V+V  SN  GF  + + LL+   A
Sbjct: 442 PLGDKAQAFDDLGALVAAVAAVARPGDRVLVM-SNG-GFGGVHDKLLQALQA 491


>gi|149182972|ref|ZP_01861428.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
 gi|148849309|gb|EDL63503.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
          Length = 876

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 131/388 (33%), Gaps = 54/388 (13%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLT 152
           R  +   II++TG+ GKTTT  ++   L     T     S   +I            P++
Sbjct: 476 RSEAAIPIISVTGTNGKTTTTRLVKHLLEGSGMTVGMTNSDGVYIGAKQVDSGDCSGPIS 535

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAK 210
             ++  +    I  L  +  G +R         + ++T ++  H  L      E++   K
Sbjct: 536 ARKVLRNPQTDIAVLETARGGILREGLAFRYCDVGIVTNVSEDHLGLDGIETYEQLVKLK 595

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------QLRKW 263
             I E + + G   LN DD     +   +      T+     +++  +       +   W
Sbjct: 596 RLIPEVVHEKGFCILNADDESTVNMATHTKG----TVIYTSLNESNPYIEKAVAERGTAW 651

Query: 264 KQCSEQSWM-------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               +   +          L  + + +  +G   H   N+L  L         ++   + 
Sbjct: 652 YVNEDGCIIFHNRGTSHTFLPIREVPITINGTAKHNVSNLLQALAAAHSQGISLEELKER 711

Query: 317 LSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              F+P     + R+     QG   +ID  Y  N A +KA    +  I  +   R I V+
Sbjct: 712 ALTFNPDAKHSRGRFNRTRVQGKEIIID--YAHNQAGLKAIYDAVEHIERN---RTITVI 766

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPRSIHVH 425
                 G+   S    +A + S  N  H+ +          +G   + + +         
Sbjct: 767 SA---AGDRQDSAIRQMARIAS-ANSDHLIIKEDKDLRGRMTGEVPMLMMEEAETYYRTS 822

Query: 426 YSETM----DGLFLFIQSSLVDGDVVVV 449
              T+    +  + +      +GD+++ 
Sbjct: 823 DYSTIIIDEEQAYQYAWDHSNEGDLLLF 850


>gi|167031608|ref|YP_001666839.1| UDP-N-acetylmuramate [Pseudomonas putida GB-1]
 gi|166858096|gb|ABY96503.1| UDP-N-acetylmuramate [Pseudomonas putida GB-1]
          Length = 449

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 120/369 (32%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGDTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPSEGLVI--- 218

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                E    +   +G  T + + G+      +L       + S  EV  +G++  VV  
Sbjct: 219 -HPTTEQALERVIGMGCWTPVQTTGEGGQWQARL----LSPDGSRFEVLFEGEAQGVVDW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I  LS F   +   +R          T+ D+ 
Sbjct: 274 ALTGQHNVANALATLAAARHVGVVPAMGIAGLSAFKSVK---RRMEKVAEVQGVTIYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      GE   IAV+    E    S     H D     S+ +   
Sbjct: 330 FAHHPTAIATTLDGLR--KRVGEAPVIAVI----EPRSNSMKLGAHRD-GLPESVNDADQ 382

Query: 404 VWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V       L       A    +    +++++ +   ++     G  VV+  SN  GF   
Sbjct: 383 VIWYAPANLGWDLAATAAQCKVPSVVADSLEAIIERVKGQARPGTHVVIM-SNG-GFGGL 440

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 441 HGKLAEALK 449


>gi|284926284|gb|ADC28636.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 432

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 86  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 143 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHY 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 192 AYTQFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 244 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 296

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 297 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 354

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 355 FAKAFEGVDELIILPVYAAGEKPIELDLKAVFPKALFVE 393


>gi|37523895|ref|NP_927272.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
 gi|35214901|dbj|BAC92267.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
          Length = 876

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 109/321 (33%), Gaps = 42/321 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------ 152
           +++  IIA+TG+ GKTTT  ++   L  I        +   +I   +             
Sbjct: 481 KTRIPIIAVTGTNGKTTTTRLIAHILRGIGLRVGFTTTDGVYIQNQMVMKGDMTGPFSAK 540

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAK 210
           L      V+  + E   +  G +R         IAV+  +   HL       +E++A  K
Sbjct: 541 LVLKDPTVEAAVME--TARGGILREGLGFPVCDIAVVLNVTADHLGLKGVETLEDLARVK 598

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           + + E +   G + LN DD     +   + A     +  F     +        +    +
Sbjct: 599 SVVPESVHPDGFVVLNADDELVADMAHDAKA----PVSYFSLDPQSPLIQDHVSRGGIAA 654

Query: 271 WME---VQLQGK----------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             E   V +             ++ +   G    M QN+L       +    +D     L
Sbjct: 655 VFEEGHVSILKGAWKLRVERVVNIPLTLSGRAVFMIQNVLAATLAAFLHGIKIDDIRAGL 714

Query: 318 SVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             F P   +   R       GF  ++D  Y  NPA  +A   VL ++      R+I V+G
Sbjct: 715 GSFVPSPAQTPGRLNVFDVNGFEVIVD--YAHNPAGYEAIQQVLERMD---NPRKIGVIG 769

Query: 377 DMCEMGELSQSFHIDLAEVLS 397
                G+        L  + +
Sbjct: 770 GP---GDRRDEDLRKLGYLAA 787


>gi|57168925|ref|ZP_00368055.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter coli RM2228]
 gi|57019761|gb|EAL56447.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter coli RM2228]
          Length = 431

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 40/326 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              + A+ G+ GK+TT  +L   L         IG+     G  +    +  +    +FE
Sbjct: 100 DKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM----IYKESQNLVFE 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +        P++A++T     HL ++    E++       + L+      +N
Sbjct: 153 ADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHHAYTQFLDVAKIRVIN 205

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D F +  K +S  L     Y     KN    +  +K     +  E++  G   E    
Sbjct: 206 AEDEFLKNYKNESTKL-----YPSKDIKNCTMCIENFKPF---TSFELKDLG---EFKVF 254

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G+GYH+A +  + +        D++T     +     +G  KR+          LID+ Y
Sbjct: 255 GMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFDILHADENLVLIDD-Y 309

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--- 403
             +P  +KA +S   + +  G  ++I  + +      L+ +   + A+      +     
Sbjct: 310 GHHPTEIKATLSAAQEYAKLGRYKKITAIFEPHRYTRLATNL-KEFAKAFE--GVDELVI 366

Query: 404 --VWLSGFHVLA--LKDALPRSIHVH 425
             V+ +G   +   LK   P+++ V 
Sbjct: 367 LPVYAAGEEPIELDLKAVFPKALFVE 392


>gi|158834108|gb|ABW81859.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 19/263 (7%)

Query: 138 ACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A   +  + I V  TL   +     F   E+     G ++     +     V T ++  H
Sbjct: 5   ATENTTGSAIDVQKTLNHFVMQGASFAAMEVSSH--GLVQHRVTALPFAAVVFTNLSRDH 62

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    +AK ++F          +N DD          H L      S      A
Sbjct: 63  LDYHGDMARYEAAKWQLFS-THHAKEKIINADDQVGRRWL---HQLPHAVAVSMEGKIPA 118

Query: 257 D-----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           D      + +     ++   +          +V   +G     N+LM L  +  L   + 
Sbjct: 119 DWKGRWLEAQNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLK 178

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +  +S      G   R          T+I + Y   P +++ A   L     H +G+ 
Sbjct: 179 KLVATVSQLQAVCG---RMEVFNALDRPTVIVD-YAHTPDALEKA---LVAARLHCKGQL 231

Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394
             + G   +  +  ++    +AE
Sbjct: 232 WCLFGCGGDRDKGKRALMGSIAE 254


>gi|118590894|ref|ZP_01548294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Stappia
           aggregata IAM 12614]
 gi|118436416|gb|EAV43057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Stappia
           aggregata IAM 12614]
          Length = 466

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 29/276 (10%)

Query: 81  LSIPVFGVDDVLGA----LNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSS 132
             +P + VD    A    +  + +  R R K    A +IAITG+ GK+TT  ++   L +
Sbjct: 79  HPVPHWSVDLARDAGVEIVGDVELFCRERRKQCPAAPLIAITGTNGKSTTTALIAHLLKA 138

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           + +     G+    IG P+     P      + E     +     L   +   + +   +
Sbjct: 139 LGRDVQLGGN----IGTPVLELDPPQPGRHYVVECSSYQID----LAPTLDATVGIHMNL 190

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +P HL     +E  A+ K  +  G        +  DD     +  +            G+
Sbjct: 191 SPDHLDRHGSMENYAAIKERLVAG---AKVAVVGVDDRLSSAIADRMELARKPVCRIAGE 247

Query: 253 SK-NADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +       R  +     + S +EV L G     +    G H  QN       +  L   
Sbjct: 248 KELTNGIYARHGRLIEAHDGSQVEVALLGG----IDSLRGDHNGQNAAAAFAALRALEIP 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +AL  F    G   R      +G    I++S
Sbjct: 304 AAQIAEALKTF---PGLHHRMEVVEKKGRILYINDS 336


>gi|192359036|ref|YP_001983419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cellvibrio japonicus Ueda107]
 gi|190685201|gb|ACE82879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cellvibrio japonicus Ueda107]
          Length = 463

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 85/264 (32%), Gaps = 15/264 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++A+ G+ GKTTT  MLT  L          IG   N+      L   P    F +
Sbjct: 101 PGKWVLAVAGTHGKTTTSAMLTWILDYAGMAPGFLIGGVTNNFPTSARLGETP----FFV 156

Query: 165 FELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  +    ++  +   H   F  +  I      +   +   G 
Sbjct: 157 VEADEYDSAFFDKRSKFVHYNARTVILNNLEFDHADIFPDLAAIQRQFHHLVRTIPNNGL 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC---SEQSWMEVQLQGK 279
           +     D     +         +      K  + D    +W      ++ S   VQ  G+
Sbjct: 217 VISPAADKALADVLTMGCWTPQQPFAVINKDTDPDAATPEWTATLLAADGSAFSVQHNGE 276

Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  VH    G H   N L  L     +    + A +AL  F   +   +R  C  +   
Sbjct: 277 EIAQVHWSHTGIHNVNNGLAALIAARHVGVTPEIAAQALQQFAGVK---RRMECLADVHS 333

Query: 339 FTLIDESYNANPASMKAAISVLSQ 362
             + D+ +  +P ++K  ++ L  
Sbjct: 334 IKVYDD-FAHHPTAIKTTLAGLRA 356


>gi|46203167|ref|ZP_00051951.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 341

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 82/256 (32%), Gaps = 24/256 (9%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + V     A    +  + +  R R     +A  +AITG+ GK+TT  +    L    +
Sbjct: 94  PHWTVPLARAAGIAIIGDIEIYCRERAALAPEAPFVAITGTNGKSTTTALTAHLLRHAGR 153

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I       + P      + EL    +     LT  + P I ++  + P 
Sbjct: 154 DVQMGGNIGTAILS----LQPPAPNRVHVIELSSFQID----LTPSLAPSIGILLNLTPD 205

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A+ K  +  G E      +  DD++   +  +     ++       +  
Sbjct: 206 HLDRHGTMENYAAIKERLIAGAE---LAVVGVDDAYCAAIAERRTGERVRIHVEGHGAAA 262

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            D              +  Q+ G     +   +G H  QN    +     L    D    
Sbjct: 263 GDVVCSAGTVRGADGAVIAQVSG-----IASLLGDHNLQNAAAAVAAARRLGLTADEIAA 317

Query: 316 ALSVFHPKEGRGKRYR 331
            L  F     R +  R
Sbjct: 318 GLQSFPGLAHRMEPLR 333


>gi|309750460|gb|ADO80444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R2866]
          Length = 453

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 141/407 (34%), Gaps = 30/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++AI+G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAISGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALR--DK 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            G G RI  L    E    +     H  D+A  L   +   +         + D   + +
Sbjct: 349 VGGGVRILAL---LEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQCV 405

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
              +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 406 QPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|89890111|ref|ZP_01201622.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89518384|gb|EAS21040.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 450

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 130/391 (33%), Gaps = 45/391 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKTT   M+   +                +    
Sbjct: 87  LKIYSYPEYLYEQSKNKTRVVIGGSHGKTTITSMILHVM--HYHDRKVDYMVGAQLEGFE 144

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  D +F I E        I      HL +P+IA+I+ IA  H++ F   E   S 
Sbjct: 145 TMVHLTDDNEFMILEGDEYLSSPIDRRPKFHLYQPNIALISGIAWDHINVFPTWENYLSQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +E  E +     +  N DD   + +   +     K  YS                    
Sbjct: 205 FSEFVECMRDGSILVYNEDDEAVKTIAEAATKPTRKHAYS--------IPAHSIING--- 253

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                 L+    ++     G H   N+     I   +  D D   +A++ F     R ++
Sbjct: 254 ---TTYLETPEGDMPIEIFGKHNLSNLAGAKWICQHMGIDEDDFYEAIASFKGASKRLEK 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---Q 386
              + N     +I + +  +P+ ++A    +   + + E + IA L    E+   S    
Sbjct: 311 ITESEN----CVIYKDFAHSPSKVQATTRAVH--NQYSERKLIACL----ELHTYSSLNP 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLF-----LFIQSS 440
            F       L   +++ V+    H + +K   P S    +     D L         +  
Sbjct: 361 EFLAQYKNTLDAADVAVVF-YSPHAVEIKKLEPISEQQIFESFDRDDLIVKTDPADFKKW 419

Query: 441 LVDGD----VVVVKSSNSCG---FYRLINLL 464
           L   D     V++ SS + G   F  L N+L
Sbjct: 420 LFTQDFNNTAVLMMSSGNYGGLDFEELKNVL 450


>gi|160896938|ref|YP_001562520.1| UDP-N-acetylmuramate [Delftia acidovorans SPH-1]
 gi|160362522|gb|ABX34135.1| UDP-N-acetylmuramate [Delftia acidovorans SPH-1]
          Length = 479

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 44/372 (11%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            V         ++A+ G+ GKTTT  ML   L          +G      GV   L    
Sbjct: 106 QVLHHPSCPRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPLDFGVSARLGASS 165

Query: 158 VDVDFG---------IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
                          + E            +  V  RP  AV+  +   H   F  +  I
Sbjct: 166 RPTPGQGPAGAEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFEDLGAI 225

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 +   +  +G + +N      E +    H      + SFG        +  +   
Sbjct: 226 ERQFHHLVRTVPASGRLVVNG---IEESITRVLHQGCWSEVSSFGS------VVSDFSAQ 276

Query: 267 SEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +    +V  +G  +  +     G H   N L  +     +      A +AL+ F   + 
Sbjct: 277 GDPGAFDVLHRGHKVARLEWALTGEHNQLNALAAIAAAEHVGVTPAQACEALARFQNVK- 335

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEM 381
             +R       G  ++ D+ +  +P +++  +  L +     + R +AV       M  +
Sbjct: 336 --RRMELRGMAGGVSVYDD-FAHHPTAIRTTLDGLRR-KLGSQARILAVFEPRSNTMK-L 390

Query: 382 GELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSI----HVHYSETMDGLFL 435
           G +            +L +   V+   +G    A +   P  +        +  +D L  
Sbjct: 391 GTMKSQL------PWALESADLVFCHTAGLDWDAAEALRPLGVGAGHKAQVAADIDTLIG 444

Query: 436 FIQSSLVDGDVV 447
            I+++   GD V
Sbjct: 445 QIRAAARTGDHV 456


>gi|157415316|ref|YP_001482572.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|189028978|sp|A8FMA8|MURC_CAMJ8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157386280|gb|ABV52595.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747958|gb|ADN91228.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932191|gb|EFV11134.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 431

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 128/341 (37%), Gaps = 40/341 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYTQFLDVAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LAEVLSLYNISH-----VWLSGFHVLA--LKDALPRSIHVH 425
            A+      +       V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFE--GVDELVILPVYAAGEEPIELDLKAVFPKALFVE 392


>gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 517

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 143/430 (33%), Gaps = 48/430 (11%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + IQG      P           GI+ D+R +         KG  +   +++    + 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFKA-EYLNGIDEA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           G    V  T+  A+  +   P   V+D   A++ L+       +++ T+I +TG+ GKTT
Sbjct: 75  GLAAYVAETEYSAATAA---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTT 131

Query: 122 TKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDVDFGIFELG 168
           T       ++++     A   S +N +     +             RM  +      E  
Sbjct: 132 TSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYL 191

Query: 169 MSHLGEIRF---LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           +  +    +     + +   +A    I+P H+S       E+    K +I    +    +
Sbjct: 192 VMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAKS---L 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQG 278
            L  D    +LL+  + A GI          +     AD     W   +  +   +    
Sbjct: 249 VLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVA--WPADTAHASFHIADGD 306

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +++   H  I G     N    + I       +D A  AL         G+  +    Q 
Sbjct: 307 QTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDA-DALHAIESVRIAGRMEQFRDPQS 365

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I + Y  N AS+ A +  + +       R   V G     G  +     ++ E   
Sbjct: 366 NTLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGS---AGNKAYDRRKEIVEAAE 421

Query: 398 LYNISHVWLS 407
               + ++ +
Sbjct: 422 NRIANFIFTA 431


>gi|90023001|ref|YP_528828.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Saccharophagus degradans
           2-40]
 gi|89952601|gb|ABD82616.1| UDP-N-acetylmuramate [Saccharophagus degradans 2-40]
          Length = 455

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 87/261 (33%), Gaps = 21/261 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
            +  ++A++G+ GKTTT  MLT  L          IG    +     +L     + DF +
Sbjct: 103 HQKWVLAVSGTHGKTTTTSMLTWILEYAGFAPGYLIGGVPGNFESSASLG----ESDFFV 158

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E               V  RP   +I  +   H   +  +  I      +   L   G 
Sbjct: 159 IEADEYDTAFFDKRAKFVHYRPRTLIINNLEFDHADIYPDLAAIQRQFHHLLRMLPADGL 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +      +  + +  +      +T+         D+Q++      + S  +V   G+S  
Sbjct: 219 LLAPNGVAAIDEVVEQGFWSDKQTL-------GDDWQVK--LHAEDGSQFDVVFDGESAG 269

Query: 283 VVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V  G  G H   N L  +     +      A +AL  F   +   +R           L
Sbjct: 270 QVTWGQTGLHNVSNGLAAIAAARHIGIAPALACEALCAFKGVK---RRMELIAQTDRVNL 326

Query: 342 IDESYNANPASMKAAISVLSQ 362
            D+ +  +P +++  +  L  
Sbjct: 327 YDD-FAHHPTAIQTTLEGLRA 346


>gi|24375298|ref|NP_719341.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
 gi|24350105|gb|AAN56785.1|AE015814_5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
          Length = 465

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 123/356 (34%), Gaps = 33/356 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKT+T  ML   L          IG    + GV   L     +  F + E  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLG----ESAFFVVEAD 163

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   VI  +   H   F+ +  I          +   G +   
Sbjct: 164 EYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFHHQIRTVPGQGKVIWP 223

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
            D    +           +T +S   +K   +  +      +    EV   G+S  V+  
Sbjct: 224 ADSHAVKQTIDMGCWSEQETYHSSEVTKG--WHAKAL--SDDCHEFEVFFDGQSQGVLDW 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H  +N +M +     +      AI AL+ F P +   +R          ++ D+ 
Sbjct: 280 ALIGQHNIENAVMAIAAARHVGVAPSAAIDALARFVPPK---RRLELLDTVNGVSVYDD- 335

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF----HIDLAEVLSLYNI 401
           +  +P ++    + +  +       +I ++     +   S +     H D     S+   
Sbjct: 336 FAHHPTAIA---TTIKGMRAKVGQTKITIV-----LEPRSNTMKSGVHKDTLAH-SMLQA 386

Query: 402 SHVWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
              +L     +   +K+A+  + I V     +D +   + +S   GD +VV  SN 
Sbjct: 387 DEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVAASAKPGDTIVVM-SNG 441


>gi|296121825|ref|YP_003629603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296014165|gb|ADG67404.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 498

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 133/369 (36%), Gaps = 48/369 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
              R  A + A+TGS GK+TT  ML         +     ++         L ++P    
Sbjct: 123 FLERCPAPVAAVTGSNGKSTTTAMLHRICEMASGSPGLRRAWLGGNIGVSLLDQLPAITS 182

Query: 161 -DFGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            D  + EL    L    +I +      P IA++T  +  HL    G+++  SAK  +F  
Sbjct: 183 DDLVVMELSSFQLYWLNQIEW-----SPSIAIVTNFSANHLDWHDGLDDYRSAKQTMFRW 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKT------IYS----FGKSKNADFQLRKWKQC 266
             ++    +N DD         +  LG +T      + +    F +S+       +  + 
Sbjct: 238 QNESDVAVINLDDPDVCQWPGPALRLGFQTGSNCSDVTTKYGVFSESEKEGCLPSQILRL 297

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +    E++L   +        G H  QN +  +   S++   ++    AL  +     R
Sbjct: 298 PDA---EIRL---AASSWLRVKGEHNLQNAMAAIAAASVMDIPMEVIETALRSYQALPHR 351

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +       + F+   ++S    P S    +   SQ         I + G   +  +LS 
Sbjct: 352 LEFVGACAGREFY---NDSLATTPESAILGLKAFSQ-------PVILLAGGYDKGVDLS- 400

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------SIHVHYSETMDGLFLFIQSS 440
                +++V+S      V L G    A+ + + +         V ++ +    F     +
Sbjct: 401 ----SMSKVISKA-CRVVVLMGQTAPAIHEQIEQYRPSGGGPEVIFASSPHDAFTKAWEN 455

Query: 441 LVDGDVVVV 449
              G+V+++
Sbjct: 456 SQPGEVMLL 464


>gi|99036108|ref|ZP_01315140.1| hypothetical protein Wendoof_01000003 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 517

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 111/384 (28%), Gaps = 82/384 (21%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +   +I +TG+ GK+TT  ++   L S  K  A  G+          +  +  D +  
Sbjct: 113 KTTNQKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVP------VLDLERDAEIY 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L + +   I+ +  I P H+     +E   + K ++  G E     
Sbjct: 167 VIELSSFQL----ELMNEINVDISALLNITPDHIDRHGSMENYIATKLKLINGSE---VA 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF--------------------------------- 250
            +  D+     +  K     I    ++                                 
Sbjct: 220 VIGCDNEITVDIFNKFTGDKIPISVTYSPMSFQRVTLESRKEKPLPTTQMTEGGARDLIS 279

Query: 251 --------------GKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                         G  +N  D  +            ++ L+ ++  +    +  ++  N
Sbjct: 280 LAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSVSDVKINLISN 339

Query: 296 M---LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                 T  +  +L  D +T I  +  F    G   R            +++S   N  S
Sbjct: 340 AENIAATYAVCKVLGVDSNTIINGIKSFS---GLRHRNELLGKIRNVFFVNDSKATNAKS 396

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            + AI     I+    GR         + G  S S H           +   +L G    
Sbjct: 397 SEKAILSYENINWIAGGRS-------KKGGIESLSKH--------FTRVRKAFLIGESTE 441

Query: 413 ALKDALPRSIHVHYSETMDGLFLF 436
           A  + +   +       ++  F  
Sbjct: 442 AFANVMENKVDYVKCCNLEDAFRL 465


>gi|119944588|ref|YP_942268.1| UDP-N-acetylmuramate [Psychromonas ingrahamii 37]
 gi|119863192|gb|ABM02669.1| UDP-N-acetylmuramate [Psychromonas ingrahamii 37]
          Length = 452

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 145/418 (34%), Gaps = 50/418 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G          V ++    IP               +   +     ++A+ G+
Sbjct: 67  IGNAMSRG-------NPCVEAVLDKQIPYIS--------GPQWLLEHVLKDRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKT+T  ML   L          IG    + G+   L   P    F + E         
Sbjct: 112 HGKTSTASMLAWILEYANMKPGFLIGGVPENFGLSARLGETP----FFVIEADEYDSAFF 167

Query: 176 RFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              +  V   P   V+  +   H   F  +  I      +   +  TG IF+   D   +
Sbjct: 168 DKRSKFVHYHPRTLVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQD---Q 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHM 292
            L           +   GK+ +     +K K+  + S  +V L Q K  +V    +G H 
Sbjct: 225 ALIDVQRMGCWSEVEYLGKNWSC----KKIKE--DASIFDVYLNQQKQGQVAWSLMGDHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +     +    + AI+AL+ F   +   +R          T+ D+ +  +P +
Sbjct: 279 VNNALAAIAAARHVGVTPEIAIEALAEFKNIK---RRMEVKGKVNSITVYDD-FAHHPTA 334

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS-GF 409
           +K  ++ L   +  G  + IAVL    E    +     H + A V +L     V+     
Sbjct: 335 IKTTLAGLR--AKVGNEKIIAVL----EPRSNTMKLGVHKE-ALVNALAAADSVYCFETE 387

Query: 410 HVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +    + L   +   V  S  +D L   + S       +++  SN  GF  + N LL
Sbjct: 388 DIKWSIEELFAEQGKAVDISHDIDELCTKLVSIAERNAHILIM-SNG-GFGNIHNKLL 443


>gi|119475944|ref|ZP_01616296.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119450571|gb|EAW31805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 451

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 123/379 (32%), Gaps = 41/379 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGI 164
               +IA+ G+ GKTTT  M    L          +G    + G    L     + DF +
Sbjct: 90  HDKWVIAVAGTHGKTTTTSMTAWILEYAGLKPGFLVGGVPANFGYSARLG----ETDFFV 145

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  +   P  A+   +   H   F  +  I +    +   +   G 
Sbjct: 146 IEADEYDTSYFDRRSKFLHYHPRTAIFNNLEYDHADIFPDLAAIQNQFHLLVRTIPGEGL 205

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           I    +D+    +  K          SFG   ++  +L       + S   V L G    
Sbjct: 206 IIHPSNDNNVAEVLLKG---CWSKTLSFGPDISS--KLSGTAISEDHSHFSVSLNGPDQN 260

Query: 282 ----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               E+     G H   N L  +     +      A +ALS F   +   +R        
Sbjct: 261 KIVGEINWLMTGLHNMNNALAAIAAARHVGISPAIACEALSKFTGVK---RRMEVIYESA 317

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAE 394
             T+ D+ +  +P +++  +  L +          A+L  + E G  +     H D LA+
Sbjct: 318 EMTVYDD-FAHHPTAIETTLEGLRKQVGKD-----AILA-IVEPGSHTMKLGIHADTLAD 370

Query: 395 VLSLYNISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--V 447
             S+ +   V           +  + DA      +    + D L   I +     ++  V
Sbjct: 371 --SVSHADEVIWFKPANIKWDIDKIVDASSNGPKMSVINSHDVLLDEIIARAKSKEIQHV 428

Query: 448 VVKS-SNSCGF-YRLINLL 464
           V+ S S   G   RL+  L
Sbjct: 429 VIMSNSGFGGLHRRLVETL 447


>gi|86143949|ref|ZP_01062317.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829656|gb|EAQ48119.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 450

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 125/391 (31%), Gaps = 45/391 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +          + T + I GS GKTT   M+   L                +    
Sbjct: 87  LKIYSYPEFLYEQSKEKTRVVIGGSHGKTTITSMILHVL--HYHDREVDFMVGAQLPGFE 144

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  + DF + E        I      HL +P+IA+I+ IA  H++ F   E     
Sbjct: 145 TMVHLTEENDFILLEGDEYLSSPIDRRPKFHLYKPNIALISGIAWDHVNVFPTYENYVEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                + + + G +  N +D+  + +   + A   K  YS       ++ +   +   E 
Sbjct: 205 FEIFADSISRGGILVYNEEDAEVKRIAEAATAPTRKHAYS-----TPEYSIEDGETLLET 259

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                        +     G H   N+     I   +  D D   +A++ F     R + 
Sbjct: 260 P---------EGPMPISVFGKHNLSNLAGAKWICQHMGIDEDDFYEAIASFEGAAKRLE- 309

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +    +  + +  +P+ + A    +    P  +      L    E+   S S +
Sbjct: 310 ---KIGETASNIAFKDFAHSPSKVAATTKAVKNQFPDRK------LFACLELHTYS-SLN 359

Query: 390 IDLA---EVLSLYNISHVWLSGFHVLALKDA---LPRSIHVHY-------SETMDGLFLF 436
            +     +         V       +A+K         I V +           +    +
Sbjct: 360 AEFIKGYKGALDAAEEAVVFYSPEAVAVKQLEVISKEQIEVAFDRDDLIIFTDAEAFKTY 419

Query: 437 IQSSLVDGDVVVVKSSNSCG---FYRLINLL 464
           ++    D  V+++ SS + G   F  +  LL
Sbjct: 420 LKQQQFDNAVLLLMSSGNYGGLDFDTVQELL 450


>gi|258508277|ref|YP_003171028.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus GG]
 gi|257148204|emb|CAR87177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus GG]
 gi|259649594|dbj|BAI41756.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus GG]
          Length = 459

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 105/327 (32%), Gaps = 34/327 (10%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++ + L+     +A       +IG+P++ +A+     D  + EL    L  I+ L     
Sbjct: 129 LIGLMLNQQWPHHA---FDAGNIGIPVSQVAQKAGKEDTIVAELSSFQLCGIKTL----H 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL          +AK  I           +N+D      L  +S A  
Sbjct: 182 PHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQA-- 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I  F + + A  +           W+                G H  +N L  +   
Sbjct: 240 --QIVPFSRKQAAGARASLID-----GWLTFDGDKIMPASDLQIPGLHNIENALAAIAAA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     D   + L  F   +    R +         + ++S   N  +   A++   Q 
Sbjct: 293 KLKGVSDDAIREVLRTFSGVK---HRIQYLETINGRRVYNDSKATNVEAATVALNAFQQ- 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                   I  L    + G       +D    L   ++  + + G     +        +
Sbjct: 349 -------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTASLMAKIAKDAGV 396

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V  +E +         +   GDV+++
Sbjct: 397 PVQKTENVMTAVPLAYEASRPGDVILL 423


>gi|285017832|ref|YP_003375543.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Xanthomonas
           albilineans GPE PC73]
 gi|283473050|emb|CBA15555.1| putative udp-n-acetylmuramoylalanine--d-glutamate ligase protein
           [Xanthomonas albilineans]
          Length = 470

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 77/251 (30%), Gaps = 30/251 (11%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L +       +G+    +   L +   P    +   EL     G++       RP
Sbjct: 134 LLAHLLRAGGHRTGLVGNIGVPL---LDVLAPPQPPQYWAIELSSYQTGDVA--CSGARP 188

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+A++  + P HL          + K  +           LN  D     L      L  
Sbjct: 189 HLAMVLNLFPEHLDWHGSQARYVADKLTLLTQARPR-IALLNAADPQLATLH-----LPQ 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  F +      +     + S   +   Q             G H   N+   L  + 
Sbjct: 243 SEVRWFNREDGWHLRGEVVYRGSTAVYDSAQT---------PLPGQHNRGNLCAVLAAIE 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      A + F P      R +    +   T +++S +  P +  AA+       
Sbjct: 294 ALGLDATALAPAATTFRPLP---NRLQTLGTRDGVTYVNDSISTTPHATLAALECFR--- 347

Query: 365 PHGEGRRIAVL 375
               GRRIA+L
Sbjct: 348 ----GRRIALL 354


>gi|213691751|ref|YP_002322337.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254765983|sp|B7GQ79|MURC_BIFLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|213523212|gb|ACJ51959.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457845|dbj|BAJ68466.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 512

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 113/342 (33%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A K
Sbjct: 285 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAK 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    AE L+      V ++G      K A
Sbjct: 399 --QPHLFSRTKFFAHQFAESLAK--ADDVIITGIFPAREKQA 436


>gi|184201130|ref|YP_001855337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
 gi|183581360|dbj|BAG29831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
          Length = 513

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 78/271 (28%), Gaps = 17/271 (6%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L         R     + ITG+ GKTTT  M    L +       +G+    I   L   
Sbjct: 130 LAWRVNRREGRKSPEWLCITGTNGKTTTVGMTASILQAAGLKAVAVGNVGTPI---LDAL 186

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R PV+ D    EL    L       H V P  + +  +A  H+      E   + K+ ++
Sbjct: 187 RDPVEYDVLAVELSSFQL----HWMHSVSPLASAVLNVAEDHVDWHGSYENYRADKSRVY 242

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQCSEQ 269
           E          N D    E L   +  +       F     G S     +     +    
Sbjct: 243 ENTRV--ACVYNADQPGAEELVEAADVVEGCRAVGFTTQHPGLSMVGVVEDLLVDRAFVA 300

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                  +  S+         H   N L    +      + +                 R
Sbjct: 301 DRARTAAELGSVSDTGPIPTRHGVANALAAAALARAAGVEPEAVRDG---LRAHHPGDHR 357

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +          I++S   NP + +A++S  
Sbjct: 358 IQLVAETDGVRWINDSKATNPHAAEASLSAF 388


>gi|84622537|ref|YP_449909.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|122879059|ref|YP_199603.6| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366477|dbj|BAE67635.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 452

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 92  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAADFGVSARLG 151

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 152 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A      ++    FG   + D+  R     ++ S  
Sbjct: 208 LVRTVPARGRLIVNGEDAHLAEVLAMGCWTSVEQ---FGFDASLDWSARLI--AADGSAF 262

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  +  V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 263 AVLHRGAEVGHVQWPLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVK---RRLE 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              +    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 320 VIGSARGITVYDD-FAHHPTAIA---TTLQGLRARVGAARVVV--AMEPRSNSMRLGAHA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P           ++ +  L   +    
Sbjct: 374 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGEARVAQDVAILLRTLGEIA 426

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 427 QPGDHVVFM-SNG 438


>gi|332707401|ref|ZP_08427451.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lyngbya majuscula
           3L]
 gi|332353892|gb|EGJ33382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lyngbya majuscula
           3L]
          Length = 470

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 130/383 (33%), Gaps = 41/383 (10%)

Query: 80  SLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--- 134
              IPV       G   + ++ +A R       +A+TG+ GKTTT  ++           
Sbjct: 85  PWDIPVLVAARTQGIETIGEIELAWRYLQSCPWVAVTGTNGKTTTTSLIAAIFQEAGFHA 144

Query: 135 KTYACIGSYNNHIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                IG     + +   +   A+    +D+ I E+    +      +  + P I V+TT
Sbjct: 145 PACGNIGYAACELLLAPEINGKAQETSPIDWVIGEISSYQI----ESSKDLAPRIGVLTT 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           + P HLS    +E     KA +   L ++    +N DD +   L             + G
Sbjct: 201 LTPDHLSRHKTLENYYDIKASL---LRRSQLQVINGDDPYLGNLGVNYWPDAYWISITGG 257

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +     FQ   + Q     W+    +          +G H  QN+LM +    +   + +
Sbjct: 258 QGDRN-FQPWAYIQDD---WVIADSEPILPVKSLQMVGDHNRQNLLMAVATARLAGIEKN 313

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               A++ F        R    +       I++S   N  + +  ++ ++          
Sbjct: 314 AIASAIAKFPGVP---HRLEKVITWQGIDFINDSKATNYDAAQVGLASVAA-------PT 363

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SET 429
           I + G   + G+ +        E + L     V L G    A    L  + +  Y   ET
Sbjct: 364 ILIAGGEAKAGDDTSW-----IETIKLKAA-VVLLIGEAAPAFATRLKEAGYSSYEIVET 417

Query: 430 MDGLF---LFIQSSLVDGDVVVV 449
           M         +      G VV++
Sbjct: 418 MAKAVPRAAELAQQYNAG-VVLL 439


>gi|283956451|ref|ZP_06373931.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792171|gb|EFC30960.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 431

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 128/341 (37%), Gaps = 40/341 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYVEFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  +T+        D++      +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLTILAALNF-LDIEMI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LAEVLSLYNISH-----VWLSGFHVLA--LKDALPRSIHVH 425
            A+      +       V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFE--GVDELVILPVYAAGEESIEIDLKAVFPKALFVE 392


>gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 517

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 143/430 (33%), Gaps = 48/430 (11%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + IQG      P           GI+ D+R +         KG  +   +++    + 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFKA-EYLNGIDEA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT 121
           G    V  T+  A+  +   P   V+D   A++ L+       +++ T+I +TG+ GKTT
Sbjct: 75  GLAAYVAETEYSAATAA---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTT 131

Query: 122 TKEMLTIALSSI-KKTYACIGSYNNHIGVPLTL------------ARMPVDVDFGIFELG 168
           T       ++++     A   S +N +     +             RM  +      E  
Sbjct: 132 TSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYL 191

Query: 169 MSHLGEIRF---LTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
           +  +    +     + +   +A    I+P H+S       E+    K +I    +    +
Sbjct: 192 VMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAKS---L 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQG 278
            L  D    +LL+  + A GI          +     AD     W   +  +   +    
Sbjct: 249 VLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVA--WPADTAHASFHIADGD 306

Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +++   H  I G     N    + I       +D A  AL         G+  +    Q 
Sbjct: 307 QTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDA-GALHAIESVRIAGRMEQFRDPQS 365

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I + Y  N AS+ A +  + +       R   V G     G  +     ++ E   
Sbjct: 366 NTLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGS---AGNKAYDRRKEIVEAAE 421

Query: 398 LYNISHVWLS 407
               + ++ +
Sbjct: 422 NRIANFIFTA 431


>gi|293603271|ref|ZP_06685701.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Achromobacter piechaudii
           ATCC 43553]
 gi|292818332|gb|EFF77383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Achromobacter piechaudii
           ATCC 43553]
          Length = 456

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 118/375 (31%), Gaps = 39/375 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGI 164
             A ++A+ G+ GKTTT  ML   L +        IG     + V    AR        +
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFLIGGVAADLKVS---ARYDPARRPFV 157

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E            +  V  RP  A++  +   H   F  +  I +    +   +  +G 
Sbjct: 158 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPASGR 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281
           I         + + A+          +FG          +     +     V   G  + 
Sbjct: 218 IVRPARSDALDRVIARG---CWSETVTFGPDG-----AWQASAPDDDGAFTVLRNGADVG 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V  +  G H   N L  L             + AL+ F   +   +R           +
Sbjct: 270 TVRWNLSGEHNRMNALAALAAAEHAGVPAAEGVTALTRFAGVK---RRMELRGTVNGIKV 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYN 400
            D+ +  +P ++   +  L      G  R +AVL    E    +       A +  +L +
Sbjct: 327 YDD-FAHHPTAIATTLEGLR--RQVGSARILAVL----EPRSNTMKLGTMAARLPAALAD 379

Query: 401 ISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G H           +   P        + +  L   + ++   GD V+V  SN
Sbjct: 380 ADLVFCFGAHSGKHALGWNPAEVLAPLGDRASSYDDIGALVAAVSAAARPGDQVLVM-SN 438

Query: 454 SCGF----YRLINLL 464
             GF     +L++ L
Sbjct: 439 G-GFGGIHGKLLDAL 452


>gi|228474999|ref|ZP_04059727.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|314936655|ref|ZP_07844002.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
 gi|228270984|gb|EEK12372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|313655274|gb|EFS19019.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 122/346 (35%), Gaps = 38/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTTT  ++       + T    G+      V   +A+     ++ I 
Sbjct: 109 SEAPIIAVTGTNGKTTTTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQETSPDEYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT I  AHL     +E   +AK  I++   +   +  
Sbjct: 166 ELSSFQLLGIEH----YRPHIAIITNIYSAHLDYHESLENYQNAKRRIYKNQTEDDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           N    + +    ++  L  KT+Y F   +  D   ++          + + +        
Sbjct: 222 N----YHQRHLIETENLKAKTLY-FSTQQEVDGIYIKDNYIVYNNVNL-INIDD------ 269

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +    +   + +L+ F    G   R +           ++
Sbjct: 270 LVLPGEHNLENILAAVLAAILAGVPIKAIVDSLTTFS---GIEHRLQYIGTNRTNKYYND 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  + + A++   Q      G            G    +   +L   +    +  V
Sbjct: 327 SKATNTLATQFALNSFKQPIIWLCG------------GLDRGNGFDELIPYMKHVRVMVV 374

Query: 405 WLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  G            +   V  +  ++     +Q  +   DVV++
Sbjct: 375 F--GETQDKFAKLGNSQGKEVIKAVDIEDAVKKVQDVIEPNDVVLL 418


>gi|90415536|ref|ZP_01223470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2207]
 gi|90332859|gb|EAS48029.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2207]
          Length = 465

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 90/268 (33%), Gaps = 24/268 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
              +I+++G+ GKTTT  M+ + L          IG      G+   L+       + + 
Sbjct: 102 DQNVISVSGTHGKTTTSSMVAVILEYAGLEPGFLIGGVPLDFGLSARLS--AGSGGYFVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPH--IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  H    ++  +   H   F  +  I      +   L  TG +
Sbjct: 160 EADEYDSAFFDKRSKFVHYHSNTLIMNNLEFDHGDIFDDLAAIQRQFHHLVRTLPSTGHL 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--------QCSEQSWME-V 274
               DD   + +  +     I+T         A+   + W           ++ S  E +
Sbjct: 220 IYPVDDHNLQQVVDQGCWSHIQTF------AEAELGSKGWGSKGWGYKLLAADGSEFEII 273

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               +S  +     G H   N +  +   S +   +D A +ALS F   +   +R     
Sbjct: 274 DQNNQSALISWQHSGRHNVLNAIAAVMAASTVGVSLDKACEALSQFVGVK---RRMEVIY 330

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQ 362
                T+ D+ +  +P ++ + +  L  
Sbjct: 331 EDERVTVYDD-FAHHPTAIISTVQGLRA 357


>gi|55981054|ref|YP_144351.1| UDP-N-acetylmuramate--alanine ligase [Thermus thermophilus HB8]
 gi|55772467|dbj|BAD70908.1| UDP-N-acetylmuramate--alanine ligase [Thermus thermophilus HB8]
          Length = 446

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 112/367 (30%), Gaps = 60/367 (16%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTH 180
           ML   L             +  + +   LA +P +   G    + E+  S       L  
Sbjct: 115 MLAAILLEAG--------LDPWVFLGGELALLPGNARPGRGPRVAEVDESDP-----LFR 161

Query: 181 LVRPHIAVITTIAPAHLS--------NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            VR  +AV T +   H++            +E +  A      G     T+ +   D   
Sbjct: 162 EVRVSVAVATNLEADHVAPRGERAPNYHESLEALKEAMRGFLAG---AKTVVVPAMDP-- 216

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYH 291
             L A +  L  +           +            +    V  +G   EV     G H
Sbjct: 217 -GLLALTEGLPRRL-----FGPGGEVWAEAVDLSPSGASFRLVHREGPLGEVHLRVPGRH 270

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        L A  +   + LS F    G G+R+      G   ++D+ Y  +P 
Sbjct: 271 NVHNALAAALAALALGASPEAISRGLSRF---PGVGRRFERVGEVGGAWVVDD-YAHHPT 326

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSG 408
            ++A +           GRR+ V      +   +Q      A+ L   +   +  V+ +G
Sbjct: 327 EVQATLEA-----ALLSGRRVRVFFQPHRL-LRTQELWEAFAQALKGAHEVVVLPVYTAG 380

Query: 409 FHVLALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                  +AL   I     +          +    + +++    D+++   +       L
Sbjct: 381 ERGRESPEALSDRIAKRLEDLGRPARRMDKEEALAYARATARPEDLLLFMGAGDVTL--L 438

Query: 461 INLLLEE 467
              L+ E
Sbjct: 439 ARRLVHE 445


>gi|227529010|ref|ZP_03959059.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227351022|gb|EEJ41313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 458

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 123/348 (35%), Gaps = 37/348 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +  ++++TGS GKTTT  +    + +    +    + N  +      A +  + D  + 
Sbjct: 110 FEGHLVSVTGSNGKTTTTTLT-QLMIAKSNAHRVEYAGNIGVSFSKVAAELGPE-DTLVT 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L        ++RPHIA+IT I   HL      E   +AK  I         + +
Sbjct: 168 ELSSFQLLG----APIIRPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTSDDYLIM 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EV 283
           N+D   ++ +  +S A    TI  F +   +           +    ++  +G  +    
Sbjct: 224 NWDRDEWQQIARRSQA----TIVPFSRQNKSH----DGSYEEDG---KIYWRGDYIMDAK 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG    +N L  +    +        +  L+ F    G   R +   +       +
Sbjct: 273 DIRLIGPQNVENALAAIAAAKLSGVTNQDIVDVLTSFS---GVRHRLQYVTDYQGRRFYN 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S + +  + + A+    Q         + +L    + G   +             ++  
Sbjct: 330 DSKSTDIEATEVALQGFEQ--------PVILLAGGLDRGYTFERLVPYF-----KKHVKA 376

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVV 449
           + + G     +KDA  ++      E+ + +    ++  V   GDV+++
Sbjct: 377 IIVFGQCKDKMKDAAEQAGIPTIIESENAITAVPEAWKVSDPGDVILL 424


>gi|254470506|ref|ZP_05083910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudovibrio sp.
           JE062]
 gi|211960817|gb|EEA96013.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudovibrio sp.
           JE062]
          Length = 466

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 127/382 (33%), Gaps = 36/382 (9%)

Query: 55  DFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
            +    V  G  L        V       IPV G  DV   +N+      +  +A  +AI
Sbjct: 65  RYAALVVAPGVPLTHPTPHWSVVRAQEAGIPVIG--DVELFVNEREA---VCPEAPFVAI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  +++  L          G+    +           +    + E+    + 
Sbjct: 120 TGTNGKSTTTALISHVLKECGMDVQMGGNIGRPVLD----LEGFSEDRVYVVEVSSYQID 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               L   + P I V+  ++P HL     +E  AS K  +   ++      +  DD F  
Sbjct: 176 ----LAPSLAPDIGVMMNLSPDHLDRHGNMENYASIKERL---VKAARLAVVGVDDEFSA 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  +  A   + I      +  +F +        + + E Q+    +   +   G H  
Sbjct: 229 AIAQR-RAESGEPIELISCHEPVEFGVYAADGKVIEVFDEEQVVVADLSSSNTLRGSHNG 287

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN    + + + L  ++D    AL+ F    G   R +     G    +++S   N  + 
Sbjct: 288 QNASAAVAVCAALGLELDEIAGALATF---PGLAHRLKLVAEAGKVLFVNDSKATNAEAA 344

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A++   +I     GR  A  G +  +                   I   +L G     
Sbjct: 345 AHALAAFDRIYWIAGGRPKA--GGISSLKAYFP-------------KIVKAYLIGEAAEE 389

Query: 414 LKDALPRSIHVHYSETMDGLFL 435
            +  L  S+  H   ++D    
Sbjct: 390 FEQELSGSVEAHKFGSLDMAVE 411


>gi|58425181|gb|AAW74218.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 455

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 95  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAADFGVSARLG 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 155 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A      ++    FG   + D+  R     ++ S  
Sbjct: 211 LVRTVPARGRLIVNGEDAHLAEVLAMGCWTSVEQ---FGFDASLDWSARLI--AADGSAF 265

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  +  V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 266 AVLHRGAEVGHVQWPLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVK---RRLE 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              +    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 323 VIGSARGITVYDD-FAHHPTAIA---TTLQGLRARVGAARVVV--AMEPRSNSMRLGAHA 376

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P           ++ +  L   +    
Sbjct: 377 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGEARVAQDVAILLRTLGEIA 429

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 430 QPGDHVVFM-SNG 441


>gi|88705706|ref|ZP_01103416.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Congregibacter litoralis KT71]
 gi|88700219|gb|EAQ97328.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Congregibacter litoralis KT71]
          Length = 460

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 124/367 (33%), Gaps = 32/367 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTT   ML   L          IG    + GV   L     D +F + E  
Sbjct: 106 VLAVSGTHGKTTASSMLAWILEDAGLAPGFLIGGVPLNFGVSARLG----DGNFFVIEAD 161

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                        V  RP   V+  +   H   +  +  I      +   +  TG +F  
Sbjct: 162 EYDTAFFDKRAKFVHYRPRTLVVNNLEFDHADIYPDLAAIQRQFHHLIRCIPGTGRVFTP 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E +         +T+   G   NAD++           W      G+ + V   
Sbjct: 222 AGIPAVEEMLELGCWTPRETLSVSG--GNADWEAS-LDDPGASHWALAAPGGERLSVSWG 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L        +      A++AL  F    G  +R       G   + D+ +
Sbjct: 279 QRGAHNVANALGACAAARHVGVTPAHAVEALERF---AGVRRRLELRGEVGGVRVYDD-F 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSFHIDLAEVLSLYNISH 403
             +P ++ + +  +   +     R +AV+        MG+   +         S  +   
Sbjct: 335 AHHPTAIASTLRAMKGAAGRQ--RVLAVIEPRSNTMRMGDHRAAL------APSTVDADA 386

Query: 404 VWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGF 457
           V+      L  +L D L +S +    SE +D L   + S  + GD V+V    +      
Sbjct: 387 VFWYQPRALGWSLDDVLAKSEVPATISEDIDELIARVVSESLPGDDVLVMSNGAFGGIH- 445

Query: 458 YRLINLL 464
            RL++ L
Sbjct: 446 ERLLSAL 452


>gi|89897956|ref|YP_515066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           felis Fe/C-56]
 gi|122063241|sp|Q255W7|MURD_CHLFF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89331328|dbj|BAE80921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           felis Fe/C-56]
          Length = 419

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 65/379 (17%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +V       IP+  V DV  A                + ITGS GKTTT   L   L 
Sbjct: 73  HPLVIEAKRRDIPI--VTDVQLAFQSPEFYQYPS-----LGITGSTGKTTTVLFLVHLLH 125

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S+  +   +G+    I       +        + E+    L E      +     A I  
Sbjct: 126 SLGISAFAMGNIGFPI------LQAMYQKGVRVVEISSFQLTEQEQ--KIPVLSGAAILN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I+  HL     +   + AK  I + L+            + + L +       ++   + 
Sbjct: 178 ISENHLDYHQTLHAYSEAKMNIAKCLQ------------WPDSLWSGEGVSSGRSYLEYT 225

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADV 310
           +  ++                 V  +G +++ ++     H   N      +   +T   +
Sbjct: 226 EEIDS-----------------VLDKGGALKPLYL----HDRNNYCAAYALAKEVTSVPL 264

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  ++A+  F        R      +     I++S     +S++ A+  + +        
Sbjct: 265 EAFLQAVQTFEKPP---HRIEYLGEKDGVRYINDSKATTMSSVEKALMAVKE-------N 314

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I ++G     G   +S    L  VL+   + H+   G     +  AL  S+ +  +  +
Sbjct: 315 VIVIMG-----GRNKESNFTSLIPVLTQT-VKHIVAMGECRKEIAQALSSSLPLTQARDL 368

Query: 431 DGLFLFIQSSLVDGDVVVV 449
                  QS    GDV+++
Sbjct: 369 QEAVSIAQSIAQPGDVILL 387


>gi|121998872|ref|YP_001003659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
 gi|121590277|gb|ABM62857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 110/342 (32%), Gaps = 35/342 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             + A+TGS GK+T   +L     +     A  G+       P          D  + E+
Sbjct: 110 GPVCAVTGSNGKSTVVSLLGEMARAAGWDVAVGGNLG----TPALELLEQAPADGYLIEV 165

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L          R  +A +  ++  H+  +  +++ A+AKA + +G        LN 
Sbjct: 166 SSFQL----EACPGFRADVAALLNVSADHMDRYDSLDDYAAAKARVLDGAR---VAVLNA 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D     L  ++ A     +  F     AD+ L +      ++W+    Q +        
Sbjct: 219 EDPQIAGLGQRADA-----VRHFNLDGPADYHLLE---QGGRAWLAAAGQPRQAIDELPV 270

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A        +       +    +  +      G   R            I++S  
Sbjct: 271 PGR--AHCANALAAMALADALGIAEVAQCRA-LQAFSGLPHRMESVGEWRGVRWINDSKA 327

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  AAI  L           + + G   +  +        LA+  +  +   V L 
Sbjct: 328 TNVGAAVAAIGGL-------HRPVVLIAGGQGKGADFRP-----LAQACAE-SARAVVLI 374

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G    A++ A+   +    +++M G           GD V++
Sbjct: 375 GEDAAAIEAAIAGRVPTERADSMVGAVAAAARWAEPGDAVLL 416


>gi|301168779|emb|CBW28370.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glut
           amyl-meso-diaminopimelate ligase [Haemophilus influenzae
           10810]
          Length = 453

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 144/409 (35%), Gaps = 34/409 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFYHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVLA--LKDALPR 420
            G  R +AVL    E    +     H D  E+         V++     L+  + D   +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKD--EIAPALGRADEVFMLQPEQLSWEVADIANQ 403

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
            +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 404 CVQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|303258238|ref|ZP_07344245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
 gi|302858991|gb|EFL82075.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
          Length = 477

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 127/352 (36%), Gaps = 38/352 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
             II ITG+ GKTTT  + T  ++   K+    G+   +    L   R    + DF + E
Sbjct: 119 PKIIGITGTNGKTTTTMLSTAIIAEAGKSVVAAGNVGPNALGELEKHRQVGTLPDFWVLE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A +  I   H+     +E+ A+AK +IF          LN
Sbjct: 179 LSSFQL----ETTESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIFS---ADTVRVLN 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQ------CSEQSWMEVQLQ 277
            +D    L    +  +    +++FG        DF +           C   +  E+ + 
Sbjct: 232 REDPGSML---SAEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASASPELLIP 288

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             ++ +     G H A N L    +   +   +D+ ++        +G   R +  L   
Sbjct: 289 MNALRIR----GLHNAMNALAATALTLAVGIPLDSILRT---LREYKGEPHRVQLILRAS 341

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D+S   N  ++ AA++           + + +LG   +  + +      L   + 
Sbjct: 342 DIDYVDDSKGTNVGAVAAALAGFG------PKKVVLILGGDGKGQDFAP-----LKAPIE 390

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    V++     L  K+     +   +++TM       ++    GD +++
Sbjct: 391 THAKGAVFIGRDAPLIEKEVDYPGLLKAHAKTMAEAVREARAMAKPGDTILL 442


>gi|309792359|ref|ZP_07686827.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
 gi|308225580|gb|EFO79340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
          Length = 457

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 115/382 (30%), Gaps = 44/382 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   I+ +TG+ GKTTT  ML   L          G+    +     L  +  +  
Sbjct: 100 FFRACPGPILGVTGTKGKTTTSLMLAAMLREAYPDTLAAGNL--RVSALEALPNLTPETP 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L   R     + P  ++IT ++  H++        A AK +IF      G
Sbjct: 158 V-VLELSSFQLE--RLGAVGLSPRFSLITNLSGDHINWHGSFGAYAQAKTQIFAHQGADG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + L   D              +  + ++  S  A               + ++    + 
Sbjct: 215 VVVLPAADVGPASQIWPLAGGYVGRMIAYDASPGA----TSAAHIDASGNLRLEAMTLAH 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               H  G H   N L    +            +AL  F   E R +R R          
Sbjct: 271 CDDIHLAGLHNRSNALAAAALAYSFGISPGQIARALCSFVGVEHRLERVR---ELAGVVY 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++++   NPA                    I + G     G   +    DL   ++    
Sbjct: 328 VNDTTATNPA-------ATLAALEALTTPIILIAG-----GADKELAFADLGAAIARRVK 375

Query: 402 SHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           + V L G     ++ A+       P +IH  Y+E         +     G+ V++    +
Sbjct: 376 ALVLLDGTATPHVQAAVAQAGLLDPHAIHGPYAE-FAQAIDVARGLAEPGETVLLSPGCA 434

Query: 452 S---------NSCGFYRLINLL 464
           S             F R++  L
Sbjct: 435 SFGMFRNEFHRGEEFRRIVQAL 456


>gi|259503032|ref|ZP_05745934.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           antri DSM 16041]
 gi|259168898|gb|EEW53393.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           antri DSM 16041]
          Length = 459

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 121/349 (34%), Gaps = 39/349 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++++TGS GKTTT  +  + L+          G+          +A      D  +
Sbjct: 111 FAGHLVSVTGSNGKTTTTTLTQLMLAKSSTHNVKYAGNIGVSFSK---VAEDLGPDDTLV 167

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L         + PHIA+IT I   HL      E   +AK  I         + 
Sbjct: 168 TELSSFQLLG----APTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTPDDFLI 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--E 282
           +N+D   ++ +  ++ A    T+  F +   +  Q   +++        +  +G+ +   
Sbjct: 224 MNWDRDEWQEIARRTRA----TVVPFSRQNKS--QAGAYEEDG-----VIYWRGERIMAA 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG    +N L  +    +        +   SV     G   R +  L+       
Sbjct: 273 KDIRLIGPQNVENALAAVAAAKLSGVSNADIV---SVLTTFSGVRHRLQYVLDYQGRRFY 329

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S + +  + + A+    Q         + +L    + G   +             ++ 
Sbjct: 330 NDSKSTDIEATEVALQGFEQ--------PVILLAGGLDRGYTFERLVPYF-----KQHVK 376

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVV 449
            + + G     +K+A  ++      E+ + +    ++  +   GDV+++
Sbjct: 377 GIIVFGQCKDKMKNAAEQAGIPTIIESENAVTAVPEAWKISAPGDVILL 425


>gi|111221632|ref|YP_712426.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia alni ACN14a]
 gi|123338790|sp|Q0RNN9|MURC_FRAAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|111149164|emb|CAJ60847.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia alni ACN14a]
          Length = 588

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 16/280 (5%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAIT 114
              A +  A L  V+  + +S  +   P       LG   +          A   ++A+ 
Sbjct: 59  APAAEKIAAELAGVDVVVASSALAEDHPEIVAARSLGLAVRRRSEWLPELTAGYRLVAVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  MLT+ L +           +    +   ++++  +   G  +L +    E
Sbjct: 119 GSHGKSTTSAMLTLVLRAAG--------LDPTAVIGAEVSQLGGNALAGSGDLFVLESDE 170

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P IAVIT +   H   F     + +A       +   G + +  DD     
Sbjct: 171 YGGAFAGLEPTIAVITNVEWEHPDIFPDEASVRTAFTAFARRVRPGGRLVVCGDDPGVAA 230

Query: 235 LKAKSHALGIK---TIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSM-EVVHHGI 288
           + A+ H  G      +  +G   +  ++          + +   V   G+ +  +     
Sbjct: 231 VLAELHRQGTPAAAPVLDYGFGTDRRWRAVDVATVAGDDTARAVVLHGGQEIGTLTLAVP 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           G H   N L  L + + L       +  L+ +     R +
Sbjct: 291 GRHSLLNALAVLAVATELGVAPAQTLATLATYTGAARRFE 330


>gi|330901307|gb|EGH32726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330978024|gb|EGH77927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 449

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 122/370 (32%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHH 286
            +     +        ++T       +N  +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIEMGCWTPVQT-----TGQNGQWQARLL--SEDGSRFEVLFEGELQGTVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGQHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDASIIAVV----EPRSNSMKLGAHRD-GLRESVSQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALK 449


>gi|323137895|ref|ZP_08072970.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocystis sp.
           ATCC 49242]
 gi|322396898|gb|EFX99424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocystis sp.
           ATCC 49242]
          Length = 475

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 107/358 (29%), Gaps = 54/358 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +AITG+ GK+TT  ++   L    +     G+    I         P D    + E  
Sbjct: 115 PFVAITGTNGKSTTTALIAHILGEAGRDVQLGGNIGVPILD----LEPPSDERIHVIECS 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              +     L   + P I ++  + P H+     +E  A+ K  +  G E      +  D
Sbjct: 171 SFQID----LAPSLNPTIGLLINLTPDHIDRHGSMENYAAVKERLVAGAE---VALVGVD 223

Query: 229 DSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------- 278
           D +   +  +  + A   + +     ++  D     W    E   +  + +G        
Sbjct: 224 DIYTHAIGGRLLAAARPDQRVVPVSGARTLD-----WGFYVEDGSVYFREKGHPPEEAEL 278

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +++      G H AQN             + D   +         G   R        
Sbjct: 279 IGTLKGARALRGAHNAQNAAFAAAATWECGLEDDEIAQG---LLSYPGLPHRMEEVGRIE 335

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   N  + + A++    I          + G   E G           E L 
Sbjct: 336 RTLFVNDSKATNADAAEKALASFDDIY-------WIIGGKSKEGG----------IEPLR 378

Query: 398 LY--NISHVWLSGFHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVV 448
            Y   I   +L G         L  ++     ET+D          +     +  V++
Sbjct: 379 DYFPRIRKAYLIGAASDEFARTLEGALPFERCETLDVATTRAALDALAGEAQEPVVLL 436


>gi|88596692|ref|ZP_01099929.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|88191533|gb|EAQ95505.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 84-25]
          Length = 431

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 36/339 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYTQFLDVAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  GK       G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLGK---FKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANL-KE 353

Query: 392 LAEV---LSLYNISHVWLSGFHVLA--LKDALPRSIHVH 425
            A+    +    I  V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFVE 392


>gi|260437302|ref|ZP_05791118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810214|gb|EFF69419.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
          Length = 453

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 126/368 (34%), Gaps = 74/368 (20%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K T+ AITG+ GKTTT  ++   +         +G+  N       + +   D  + + E
Sbjct: 108 KGTVFAITGTNGKTTTTTLVGEIMKKYNNQTFVVGNIGNSYTSE--VLKTTKDS-YTVAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTI 223
           +    L  IR       P  + I  I P HL+    +E  A+ K  I +    + +    
Sbjct: 165 ISSFQLETIREFA----PRGSAILNITPDHLNRHYTMENYAAVKESITKNQWKVREDDYC 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRKWKQCSEQSWMEVQLQGK 279
            LNYDD              IK    F +    SK A    R  +    ++  EV     
Sbjct: 221 VLNYDDKVLREF-----GKTIKNPVYFSRKEKPSKGAYLDGRIIRYFDGKNDYEV----M 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S++ +H   G H  +N++  + +       ++  I  +  F   E    R     ++   
Sbjct: 272 SVDDMH-LFGNHNYENVMAAIAMTIEAGVPLNIIINVIKDFMGVE---HRIEYVRDKNGV 327

Query: 340 TLIDESYNANPASMKAAISVLSQ------------------ISPHGEGRRIAVLGDMCEM 381
              ++S   NP S   A+  +S+                  I       ++ VL     +
Sbjct: 328 RYYNDSKGTNPDSSIKALEAMSRPTILIAGGYDKHSEFDEFIEAFDNKVKLMVL-----L 382

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ +      + E    +  +++                      +++++        + 
Sbjct: 383 GQTAD----KIEETAVRHGFTNII--------------------KTDSLEKAVKICAENA 418

Query: 442 VDGDVVVV 449
           V GDVV++
Sbjct: 419 VSGDVVLL 426


>gi|163856170|ref|YP_001630468.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259898|emb|CAP42199.1| cyanophycin synthetase [Bordetella petrii]
          Length = 857

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 129/405 (31%), Gaps = 70/405 (17%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----- 147
            A+     A     +  ++A+ G+ GKTTT  + T  L+          S   +I     
Sbjct: 456 EAIIASMFAEGDDGRIPVVAVAGTNGKTTTVRLTTHLLAGSGLRVGMTNSDGVYIGARSI 515

Query: 148 -----GVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                  P +  R      VD  +FE   +  G +R      R  +A++T +    HL  
Sbjct: 516 DSGDCSGPRSARRVLAHPGVDAAVFE--TARGGILREGLAFDRCDVAIVTNLGMGDHLGL 573

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS------------------ 239
              S +E++A  K  I + +   GT  LN  D     + +                    
Sbjct: 574 GYISTVEDLAVVKRVIVQYVHAGGTAVLNATDPIVADMASACPGSVTFFSSDPAHPLIGT 633

Query: 240 -HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A G + +Y  G               + Q   EV++    + + H G       N + 
Sbjct: 634 HRAQGHRVVYRDGPD-----------IVAAQGDAEVRIALADIPLTHGGAIAFQVDNAMA 682

Query: 299 TLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            +     L  D     + L+ F    +    R+     +G   + D  Y  NP +++A +
Sbjct: 683 AVAAAWSLGVDWPVIRQGLAGFISDAQTVPGRFNMFDYRGATVIAD--YGHNPDAIQALV 740

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
             +  +      RR  V+    +  +       ++           V L           
Sbjct: 741 QAVEALPA---RRRSVVISGAGDRRDDDLRRQTEILGDA----FDDVVLYEDQCQRGRAD 793

Query: 408 GFHVLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           G  +  L+  L  +    + E + G         + L  GD+ +V
Sbjct: 794 GEVLTLLRQGLAGAQRARHVEEIRGEFLAIDTALARLEAGDLCLV 838


>gi|119713198|gb|ABL97266.1| UDP-N-acetylmuramate: L-alanyl-diaminopimelate ligase [uncultured
           marine bacterium EB0_50A10]
          Length = 435

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 148/437 (33%), Gaps = 73/437 (16%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G +    + G S D+  +   + +             I +A+ +G        + V  I
Sbjct: 42  LGNLGIDMIKGYSKDT--LPKADLYV------------IGNALSRG-------NECVEFI 80

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               +P      +LG + +         +  + A++G+ GKTTT  MLT       K   
Sbjct: 81  LDTKLPFKSGPQMLGDILE---------EKRVFAVSGTHGKTTTSYMLTHIFLDQGKDIG 131

Query: 139 -CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPA 195
             +G  +++I    +L          + E            +  +   P   +I  I   
Sbjct: 132 FLVGGISDNISGSASLGT----DKIFVIEADEYDSAFFDKRSKFIHYSPSTLIINNIEYD 187

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H   F G+++I      + + +  +G I    DD     +        +  I       N
Sbjct: 188 HADIFDGLKDIKKQFHHLLKIIPTSGNIIYFNDDPNTLDVINMGQWSNLIKINDDKIQIN 247

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            D +             E+Q+  ++        IG H  +N +  +         ++ +I
Sbjct: 248 YDLR-------------EMQVSEETFSLKNMPLIGEHNFKNYISAILAAKTAGVAIEDSI 294

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            +L  F   +   +R           + D+ +  +P +++A+   + +  P  +     +
Sbjct: 295 SSLLKFQGVK---RRLEFKGLHSDVQIYDD-FAHHPTAIEASSKAIRKQFPSNK-----I 345

Query: 375 LGDMCEMGEL--SQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           LG + E+     S+  H      L   +     V       L  K+A+ +   ++ S  +
Sbjct: 346 LGVI-ELASNTMSKGVH---GNSLIESSSFFDEVIW-----LDHKNAIKKHNDINISNDL 396

Query: 431 DGLFLFIQSSLVDGDVV 447
                 +++ + D D+V
Sbjct: 397 ADCIQKVKNIIKDYDIV 413


>gi|319957735|ref|YP_004168998.1| UDP-N-acetylmuramate--l-alanine ligase [Nitratifractor salsuginis
           DSM 16511]
 gi|319420139|gb|ADV47249.1| UDP-N-acetylmuramate--L-alanine ligase [Nitratifractor salsuginis
           DSM 16511]
          Length = 440

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 119/355 (33%), Gaps = 46/355 (12%)

Query: 43  FFAIKGPHYDGHDFILH------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV----- 91
           F A +G    G D          A+  GA + + +           I    V        
Sbjct: 19  FLAGRGHRISGSDMRQSEITDDLALNYGAKITIPHHPDAVEGADRVIYSAAVRPSNVEYQ 78

Query: 92  ------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                 +  L++      +     + A+ G+ GK+TT  ML   L     T A IG+ + 
Sbjct: 79  RAKELGIELLSRKEALKFILEDKEVYAVGGAHGKSTTSAMLASLLPE---TNALIGAISK 135

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIE 204
             G  +  A      D  +FE   S    +        P +A++T + P H+  +    E
Sbjct: 136 EFGSNVRSAPN----DKVVFEADESDESFL-----NSNPKLAIVTNVEPEHMEYYEYDEE 186

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              +A  +    LE      LN +D F   LK +   L    +Y      N +F L   +
Sbjct: 187 RFYNAYRKF---LELAHIRVLNGEDPFLYSLKEE---LPSSYLYPSRDLNNIEFVLVDGE 240

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                +  E++  G+       G G H+A +  + +     L  D +T            
Sbjct: 241 P---HTRFELRDLGR---FEVFGFGTHIAVDAALAILAAMELGEDPETL---RERLKNYR 291

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           G  KR+    N     +ID+ Y  +P  + A +  L   +      +  V+    
Sbjct: 292 GIKKRFDIIQNDEHCVVIDD-YGHHPTEIAATLESLRTFAKMRGLSKFKVIWQPH 345


>gi|304315544|ref|YP_003850689.1| hypothetical protein Tthe_0007 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777046|gb|ADL67605.1| domain of unknown function DUF1727 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 453

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 124/354 (35%), Gaps = 58/354 (16%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTY------ACIGSYNNHIGVPLTLARMPVDVDFGI 164
           + +TG+ GKTTT  ++   L S  K        A + S    + +  +     ++ D G+
Sbjct: 51  VVVTGTNGKTTTSGLIAEILKSSGKKVVHNREGANMLSGIATVLIKNSDFFGNINKDAGV 110

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           FE+       +  + + + P I V+T      L  +  ++       E    L K   + 
Sbjct: 111 FEV---DEANMPLVLNDINPKIVVVTNFFRDQLDRYGELDITIKKVKESLNRLPKDSMLL 167

Query: 225 LNYDDSFFELL----------------------------KAKSHALGIKTIY---SFGK- 252
           LN D+ F   L                            +      G K +Y    +G+ 
Sbjct: 168 LNADEPFTASLGDDLNLNVMYYGILDKLNYGYSLSPAFEQKYCPVCGGKYVYKDVFYGQL 227

Query: 253 -----------SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                        N DF     K   +    +++ + K + +  H  G +   N++ ++ 
Sbjct: 228 GDYYCPKCGKSRPNLDFGALDIKLTEDGISFKIKYKDKLINIKSHLNGAYNIYNVMSSVA 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L   +      L+ + P  GR +       +    LI      NP    + +++L 
Sbjct: 288 TNILLGTPLSYIQAGLNNYRPIAGRLQTTYLKGKKAIINLIK-----NPIGFDSTLNMLR 342

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +I+       IA+  +  +  ++S  + +D+   +S   I++V  SG     + 
Sbjct: 343 EINKPLNL-LIAINDNYADGRDVSWLWDVDIENFVSHAKINYVVTSGLRAEDMA 395


>gi|199598140|ref|ZP_03211562.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
 gi|199590901|gb|EDY98985.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
          Length = 459

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 101/326 (30%), Gaps = 32/326 (9%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + L+     +A   + N  I V     +   D D  + EL    L  I+ L     P
Sbjct: 129 LIGLMLNQQWPHHA-FDAGNIGIPVSQVAQKAGKD-DTIVAELSSFQLCGIKTL----HP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL          +AK  I           +N+D      L  +S A   
Sbjct: 183 HIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQA--- 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  F + + A  +           W+                G H  +N L  +    
Sbjct: 240 -QIVPFSRKQAAGARASLID-----GWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAK 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D   + L  F   +    R +         + ++S   N  +   A++   Q  
Sbjct: 294 LKGVSDDAIREVLRTFSGVK---HRIQYLETINGRRVYNDSKATNVEAATVALNAFQQ-- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
                  I  L    + G       +D    L   ++  + + G     +        I 
Sbjct: 349 ------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTAPLMAKIAKDAGIP 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           V  +E +         +   GDV+++
Sbjct: 398 VQKTENVMTAVPLAYEASRPGDVILL 423


>gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
 gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
          Length = 454

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 124/368 (33%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +G+    +   + L
Sbjct: 79  GDVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIGVSLLDAV-L 137

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A  P DV     EL    L         VRPH A +  +AP HL     +   A+ K  +
Sbjct: 138 AEEPYDV--LAVELSSYQL----HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRV 191

Query: 214 FEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +EG         N  D   E L +A     G + I ++ G  + ++  + +         
Sbjct: 192 YEG--NQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVVEGYLVDRAFV 249

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +   Q + +  V        H   N L    +            + L  F P      R
Sbjct: 250 PDRAQQAQELAEVADVDPPAPHNVANALAAAALARAFGVPATAVREGLRAFRPDP---HR 306

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     + +D+S   N  + +A+++             I  +      G       
Sbjct: 307 IEHVATIDGVSYVDDSKATNTHAAEASLAAYEP---------IVWIAGGLAKGASFDELV 357

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSET--MDGLFLFIQSSL 441
              A+ L       V L G     +++AL R       + +  ++T  M           
Sbjct: 358 QGAAKRLRA-----VVLMGRDRALIREALARHAPNVPVVDLDRADTGAMSEAVREAAGLA 412

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 413 ESGDTVLL 420


>gi|282891539|ref|ZP_06300030.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498507|gb|EFB40835.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 128/368 (34%), Gaps = 38/368 (10%)

Query: 84  PVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  +     +  L ++ +A R   +  +I ITG+ GKTT   +LT  L+        +G
Sbjct: 85  PVLQLAQAKNIKILGEIELAFR-SLRNKLIGITGTNGKTTVTLLLTHLLNYAGIPAKAVG 143

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +    +   +T           + EL    L  ++      +  + VI  I P HL  ++
Sbjct: 144 NVGEPLSAEIT----CSSETVLVVELSSFQLDTLQSR----QLDMGVILNITPDHLDRYA 195

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E+ A +K +I   +++   +++       +  +           + +G S N      
Sbjct: 196 SMEDYALSKMKIKSCIKEGAPLYM-----EEKAFQNYGFLQANFPCHLYGYSHNCHLMSD 250

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +      ++   +      + + +     H  +N++   G+   +  D     + +S F+
Sbjct: 251 QQHLFLNKNIDSI------LPIEYRETKSHRLENLMAAYGLCREMGIDATLFWEGVSTFN 304

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                  R          +  ++S   N  ++  AI  +       EG  I + G + + 
Sbjct: 305 TPP---HRIEKVAIFKNVSYYNDSKGTNIDAVMRAIETI-------EGPIILIAGGVDKG 354

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            + S               + H+   G     L   L +S +V   + M        S  
Sbjct: 355 TDFSPW------ISAFANKVKHICAIGQATEKLDRTLSKSFNVVRCQNMHDAVKHASSLA 408

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 409 YPGDNVLL 416


>gi|328542964|ref|YP_004303073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412710|gb|ADZ69773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 466

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 97/292 (33%), Gaps = 23/292 (7%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           F    +  G  L          +     + V G  ++           R+   A +IAIT
Sbjct: 66  FAALVLAPGVALTHPKPHWSVELARTAGVEVIGDIELF-----CRERRRICPDAPLIAIT 120

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GK+TT  ++   L ++       G+    +   L LA +       + E     +  
Sbjct: 121 GTNGKSTTTALIAHLLKTLGLDVQMGGNIGTPV---LDLAPLQPG-RHYVVECSSYQID- 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              L   + P + ++  ++P HL     +E  A+ K  +  G   + T  +  DD F E 
Sbjct: 176 ---LAPSIEPTVGILMNLSPDHLDRHGTMENYAAIKERLVAG---SRTAVVGVDDRFSEA 229

Query: 235 LKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +  +    G++     G    AD       +     S    Q  G  +  +    G H A
Sbjct: 230 IADRIARAGVRVRRISGHLPQADGVFAEGSRLVEADSG--AQTLGADLAGIGALRGRHNA 287

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           QN       +  L         AL  F    G   R +     G    I++S
Sbjct: 288 QNAAAAFAALRALGLSAARIAGALVSF---PGLAHRMQIVARSGRILFINDS 336


>gi|296454431|ref|YP_003661574.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183862|gb|ADH00744.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 512

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 132/418 (31%), Gaps = 59/418 (14%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQS--WMEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A K
Sbjct: 285 ETAGSGIEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAK 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----------------FHVLALKDALP 419
                +   ++ F    AE L+      V ++G                  ++     L 
Sbjct: 399 --QPHLFSRTKFFAHQFAESLAK--ADDVIITGIFPAREKQTDFPDISPSTIVDAAAGLK 454

Query: 420 RSIHVHYSETMDGL---FLFIQSSLVDGDVVVVKSSNSC-GFYRL-INLLLEEFPAIQ 472
            +    + + ++ +      +      GDV+    +       ++ +  L     + +
Sbjct: 455 DASAGTWIQPVEDMCLAAKMMAMRAHHGDVIFTVGAGDITDMDQVLLTALEAHRESCE 512


>gi|160901141|ref|YP_001566723.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366725|gb|ABX38338.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 875

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 112/360 (31%), Gaps = 47/360 (13%)

Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           T      A+++    Y     I S +         A    + D  + E      G +R  
Sbjct: 509 TSHGWRTAMTNTDGVYVNGRQIDSGDCSGPRSARNALAHPETDAAVLECA--RGGILREG 566

Query: 179 THLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               R  +AV+T +    HL     + +E++A  K  I + +   G   LN  D     +
Sbjct: 567 LGFDRCQVAVVTNVGAGDHLGLNYITTVEDVAVLKRVIVQNVATDGYAVLNAADPLVAAM 626

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-------------SEQSWMEVQLQGKSME 282
            + S       +  F   ++         Q              +E SW E  +  + + 
Sbjct: 627 ASTSPG----KVIYFAADRHHPVMATHRAQGNRVVYVDGDSIVAAESSWRE-TIALREIP 681

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  +G      +N++  +     +     T  + L+ F             ++    TLI
Sbjct: 682 ITRNGTISFQVENVMAAIAAAWGVGMPWQTIRRGLAGFVNDSDNAPGRFNVMDYRGATLI 741

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  NP +++A +  +  +      RR  V+    +  +   +    +          
Sbjct: 742 AD-YGHNPDAIRALVQAVDAMPAQ---RRSVVISGAGDRRDQDITEQTQIL----GKAFD 793

Query: 403 HVWLS----------GFHVLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            V L           G  +  L+  L  +    Y   + G         + L  GD+ +V
Sbjct: 794 DVILYQDACQRGRADGEVLALLQQGLQGAPRTDYVTQIQGEFNAIDHALARLTPGDLCLV 853


>gi|302767366|ref|XP_002967103.1| hypothetical protein SELMODRAFT_408505 [Selaginella moellendorffii]
 gi|300165094|gb|EFJ31702.1| hypothetical protein SELMODRAFT_408505 [Selaginella moellendorffii]
          Length = 521

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 104/348 (29%), Gaps = 45/348 (12%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---------------S 106
           + GA +   + +       +      V   + A N+  VAAR +                
Sbjct: 76  EAGAIVHAGHDERWLRDCGIFPDAVVVSSAIPAENEEVVAARRQGLRVIKRKEWLGEITE 135

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
              +IA+ G+ GK+TT  MLT+ L S      A +G+    +                + 
Sbjct: 136 DYELIAVAGTHGKSTTTAMLTVVLQSFSDDITAIVGADVPQLAGG---NMAYGKGGRFVL 192

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E       V P +A++T++   H+  F     +          ++  G + +
Sbjct: 193 EA-----DEYDGCFLGVSPSLAIVTSVEWEHVDMFPDEASVREMFKHFISRIKPDGCLII 247

Query: 226 NYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSME 282
             D +    L         +     ++G  +  D++           +      + + M 
Sbjct: 248 CGDSAGTRSLITSLEQYSKQASRKLTYGLHEQNDWRAIMLVPNILGGTDYVAVYRNRPMA 307

Query: 283 VV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK--------------EGRG 327
            V     G +   N L  L  VS+L      +                        +G  
Sbjct: 308 RVSLKLPGTYNVLNSLAVLAAVSLLAFKGKGSCDESGQLKAMAVAAQAASSALQSFQGLR 367

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +R+          + D+ Y  +P  ++A +    Q     +     V 
Sbjct: 368 RRFEYVGTVRRCDIYDD-YAHHPTEVRAVLQAARQ--RFDKQPIWVVF 412


>gi|189439045|ref|YP_001954126.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium longum DJO10A]
 gi|229486471|sp|B3DQN2|MURC_BIFLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189427480|gb|ACD97628.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium longum DJO10A]
          Length = 512

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 112/342 (32%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A  
Sbjct: 285 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAN 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 399 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 436


>gi|71281117|ref|YP_268602.1| mur ligase family protein [Colwellia psychrerythraea 34H]
 gi|71146857|gb|AAZ27330.1| mur ligase family protein [Colwellia psychrerythraea 34H]
          Length = 584

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 142/419 (33%), Gaps = 88/419 (21%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-------------TLARMPVD 159
           +TG+ GK+T+  +++  +    K      +    +G  +              L R P D
Sbjct: 186 VTGTNGKSTSVRIMSQIIKQAGKCCGVTSTDFIRVGDNIIDHGDYSGPGGARMLLRHP-D 244

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGL 217
            +  I E+     G +R    +     A+IT IA  HL  +    +  +A AKA + +GL
Sbjct: 245 TETAILEVA--RGGILRRGLPIDNVDAALITNIAEDHLGQYGINTVSALAQAKAVVAKGL 302

Query: 218 EKT-------------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                           G + LN DD    +L  +       T   F   ++    L++ K
Sbjct: 303 LPNLEDKGQEHNRQDKGRLVLNADDENLVVLAPEIPV----TKSWFSLHEDN-ATLQQHK 357

Query: 265 QCSEQSWM--------------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           Q                      V +    + +  +G   H  QN L  + +   L  + 
Sbjct: 358 QKGGAVCFVREQHLVYSVGNEESVIIAVNDIPMTLNGAALHNIQNALGAIALAKCLNVEN 417

Query: 311 DTAIKALSVF----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
           +    ALS F        GRG  +     +    +I + +  N  SM+A     + +   
Sbjct: 418 EAIKIALSNFASNVEDNPGRGNHFTVKSAE----VIMD-FAHNVHSMEAMAVTTANMKAQ 472

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALK 415
              R+  +L      G+ + +  I++ +         +  +           G     + 
Sbjct: 473 ---RKFLMLS---HAGDRTDNEIINMTKTALKMKPDFIVAAELVPYLRGRTLGEIPQLIV 526

Query: 416 D-ALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRLINLLLEE 467
           D AL   +    ++ +++      +I   L + D+ ++             +I LLL++
Sbjct: 527 DTALAYGMKRSDIYIADSPFKGANYIVEQLREKDLALL-----MVLSEREEIIELLLDK 580


>gi|322691460|ref|YP_004221030.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456316|dbj|BAJ66938.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 512

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 113/342 (33%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A K
Sbjct: 285 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAK 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 399 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 436


>gi|66043897|ref|YP_233738.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. syringae B728a]
 gi|63254604|gb|AAY35700.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. syringae B728a]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 121/372 (32%), Gaps = 43/372 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +     +        ++T       +N  +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIEMGCWTPVQT-----TGQNGQWQARLL--SEDGSRFEVLFEGELQGAVDWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGQHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++   +  L      G+   IAV+      M  +G         + +        
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDASIIAVVEPRSNSMK-LGAHRDGLRESVGQ------AD 381

Query: 403 HVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V        G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF
Sbjct: 382 QVVWYAPPNLGWDLAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GF 437

Query: 458 ----YRLINLLL 465
                +L   L 
Sbjct: 438 GGLHGKLAEALQ 449


>gi|224372892|ref|YP_002607264.1| UDP-N-acetylmuramate--L-alanine ligase [Nautilia profundicola AmH]
 gi|223589642|gb|ACM93378.1| UDP-N-acetylmuramate--alanine ligase [Nautilia profundicola AmH]
          Length = 434

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 106/273 (38%), Gaps = 32/273 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++++ G+ GK+TT  ML   L    KT A IG+ +   G  +         D+ +FE
Sbjct: 99  DKKVLSVCGAHGKSTTSSMLASIL---PKTNAIIGAESKDFGSNMR----YTGSDYLVFE 151

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    I        P+IA++T   P H+  ++   ++        E L+K     +N
Sbjct: 152 SDESDGSFID-----SNPYIAIVTNTEPEHMEYYN--HDLKLFYRHYEEFLKKAKIRVVN 204

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD F + L      + IK               +  +     +  +   + K+ +   +
Sbjct: 205 ADDEFIKTLDFPMKKVSIKD-------------AKNIRYEIIDNKPKTVFEYKNYDFEVY 251

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G G H+  + L+ +   + L   ++   K +  +H   G  KR+    N   F LID+ Y
Sbjct: 252 GFGEHLVLDALLAIEAANEL-ITMEEIQKNIKNYH---GIKKRFDILQNCENFILIDD-Y 306

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
             +P  +KA +      +      +++V+    
Sbjct: 307 GHHPTEIKATLHSAKIFAKLNGIDKVSVIWQPH 339


>gi|150397285|ref|YP_001327752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           medicae WSM419]
 gi|150028800|gb|ABR60917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium
           medicae WSM419]
          Length = 463

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 101/304 (33%), Gaps = 29/304 (9%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           ++G  +  H F    +  G  L        ++  +    V  + DV   + +    A   
Sbjct: 58  LRGEEW--HAFSALVLSPGVPLT-HPKPHWSADLAHHAGVEIIGDVELFVRERRKHA--- 111

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L +  +     G+    IG  +     P    F + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILRASGRDTQLGGN----IGTAVLTLEPPQADRFYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +GT  +
Sbjct: 168 ECSSYQID----LAPTLDPTAGILLNLTPDHLDRHGTMQHYADIKERLVAG---SGTAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRK---WKQCSEQSWMEVQLQGKSM 281
             DDS   L+  +    G K +    +   A+          +     S +   L G   
Sbjct: 221 GVDDSLSSLIADRVERAGTKVVRISRRHPLAEGVYAEGTALMRATGGASSLFTDLAG--- 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +    G H AQN    +     +       +  L  F    G   R +    +G    
Sbjct: 278 --IQTLRGGHNAQNAAAAIAACLAVGISEKDIVDGLRSF---PGLKHRMQPVAKKGETIF 332

Query: 342 IDES 345
           +++S
Sbjct: 333 VNDS 336


>gi|309972750|gb|ADO95951.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R2846]
          Length = 453

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 146/410 (35%), Gaps = 32/410 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L   P    + + E            +  +   P 
Sbjct: 125 ILEQNGLKPGFLIGGIAGNFGISARLGTSP----YFVIEADEYDTAFFDKRSKFIHYNPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 181 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 237 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 294 HTGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-K 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             G  R +AVL    E    +     H D +A  L   +   +         + D   + 
Sbjct: 349 VGGGVRILAVL----EPRSNTMKMGVHKDEIAPALGRADAVFMLQPEQLPWEVADIANQC 404

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEE 467
           +   +++  +D L   I +     D ++V    S       ++++ L ++
Sbjct: 405 VQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLKQK 453


>gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
           xylosoxidans C54]
          Length = 510

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 127/387 (32%), Gaps = 55/387 (14%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A     +A     +  ++A+TG+ GKTT   +    +++   +    G+ +      L
Sbjct: 115 LFARALAELAETREYRPRVLAVTGTNGKTTVTALTRDLVAASGLSVLAAGNISPAALTAL 174

Query: 152 TLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A    D+    + EL    L      TH +    AV+  +   HL    G++  A  K
Sbjct: 175 MQALDADDLPQVWVLELSSFQL----ETTHTLMADAAVVLNVTQDHLDWHGGMDAYARTK 230

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK------------------ 252
           A +   L+ T    +N DD +   +     A+ ++   SFG+                  
Sbjct: 231 ARL---LKMTRIAIVNRDDPYTVDMVPSLAAMPVR---SFGREVPELVGDMGLELGQGVA 284

Query: 253 ----SKNADFQ-----LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++  DF      +R+ K   E +  + ++            G H A N L  L + 
Sbjct: 285 WLVAAEPLDFDEPVAPVRRKKDAPEPTRAKGRMSRLMPVDALRIRGIHNALNALAALQLA 344

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       ++A        G   R     + G    I++S   N  +  AA+  + Q 
Sbjct: 345 RCLDLGWGPMLRA---LREYAGEPHRAAFVRSIGGVDYINDSKGTNVGATVAALEGMGQ- 400

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                   + + G   +  + S          +   +   V L G     +   L    +
Sbjct: 401 ------PVVLIAGGQGKGQDFSP------LIPVVSRHARAVLLIGQDGPEIGRVLAATGV 448

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
                E++             GDVV++
Sbjct: 449 DCIAVESLRDAVRRAAELAQAGDVVLL 475


>gi|23465885|ref|NP_696488.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum
           NCC2705]
 gi|227547557|ref|ZP_03977606.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|44888221|sp|Q8G4Q4|MURC_BIFLO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23326588|gb|AAN25124.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum
           NCC2705]
 gi|227211967|gb|EEI79863.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 512

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 113/342 (33%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A K
Sbjct: 285 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAK 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 399 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 436


>gi|145640000|ref|ZP_01795598.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
 gi|145270887|gb|EDK10806.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
          Length = 453

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 142/407 (34%), Gaps = 30/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            G  R +AVL    E    +     H  D+A  L   +   +         + D   + +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQCV 405

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
              +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 406 QPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|330971628|gb|EGH71694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 121/372 (32%), Gaps = 43/372 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +     +        ++T       +N  +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIEMGCWTPVQT-----TGQNGQWQARLL--SEDGSRFEVLFEGELQGAVDWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGQHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +P ++   +  L      G+   IAV+      M  +G         + +        
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDASIIAVIEPRSNSMK-LGAHRDGLRESVGQ------AD 381

Query: 403 HVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V        G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF
Sbjct: 382 QVVWYAPPNLGWDLAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GF 437

Query: 458 ----YRLINLLL 465
                +L   L 
Sbjct: 438 GGLHGKLAEALQ 449


>gi|330964893|gb|EGH65153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 120/370 (32%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +     +        ++T       +   +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIKMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLFEGELQGAVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R          T+ D+ +
Sbjct: 275 MTGLHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVAEVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDAPIIAVV----EPRSNSMKLGAHRD-GLPESVQQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       ++     ++++ +   ++S    G  VV+  SN  GF  
Sbjct: 384 VWYAPPNLGWDMAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHVVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALQ 449


>gi|312132485|ref|YP_003999824.1| murc [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689505|ref|YP_004209239.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|311773413|gb|ADQ02901.1| MurC [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460841|dbj|BAJ71461.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 512

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 112/342 (32%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A  
Sbjct: 285 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAN 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGMVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 399 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 436


>gi|257095425|ref|YP_003169066.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047949|gb|ACV37137.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 860

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 123/398 (30%), Gaps = 52/398 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A    ++  ++A+ G+ GKTTT  ++   L           +   ++     
Sbjct: 455 EAIIASMFADGDDARIPLVAVAGTNGKTTTVRLIASILGEQGLRVGMTTTDGVYVEGRRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          +   VD  + E   +  G +R      R  +AV+T I    HL  
Sbjct: 515 DTGDCSGPKSARNVLLHPGVDAAVLE--TARGGVLREGLGFDRCDVAVVTNIGLGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
              S +E+++  K  I + +   +G   LN  D     +          T+  F   +N 
Sbjct: 573 SYISTVEDLSVVKRVIVQNVTPVSGVAVLNAADPMVARMADSCPG----TVTFFACDRNH 628

Query: 257 DFQL------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                                 +    +E +L   ++ V   G      +N +  +    
Sbjct: 629 PLMAMHRAQRKRVVYRDGDALVASGGGVEHRLALAAIPVTQKGAIGFQVENAMAAVAAAW 688

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D  T    L+ F              +    TLI + Y  NP +++A ++ +  + 
Sbjct: 689 ALGVDWATIRSGLASFVNDAQTAPGRFNVFSYRGATLIAD-YGHNPDAIQALVNAVDNLP 747

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                +R  V+      G+          E+L       V L           G  +  L
Sbjct: 748 SGPGSKRSVVISG---AGDRRDEDIRRQTEILGSA-FDRVVLYQDQCQRGRADGEVLALL 803

Query: 415 KDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +  L  +      + + G         + L  GD+ ++
Sbjct: 804 QQGLQSARRASEIQEIHGEFLAIDTALAELQAGDLCLI 841


>gi|23335451|ref|ZP_00120687.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bifidobacterium
           longum DJO10A]
          Length = 505

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 112/342 (32%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 106 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 166 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 217

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 218 AHAGRATGHVIISIDDPDGLAVLEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 277

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A  
Sbjct: 278 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAN 337

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 338 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 391

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 392 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 429


>gi|193214547|ref|YP_001995746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226711896|sp|B3QWT5|MURD_CHLT3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193088024|gb|ACF13299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 468

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 123/357 (34%), Gaps = 38/357 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
           KA IIAITG+ GKTT   +      +             +IG P +       + D  + 
Sbjct: 109 KAKIIAITGTDGKTTVTTLTKKIFEADGNENGYHAYALGNIGQPFSDTVESLSENDVAVI 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E+    L          RP++ VIT I P HL  +   I++ A+AK  I++    +  + 
Sbjct: 169 EISSFQLEH----CTSFRPNVTVITNITPDHLDRYDGNIQKYAAAKYRIYQNQTASDWLI 224

Query: 225 LNYDDSFFELL---KAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            N D+           +  +L +K +  S  K+   +++   +K   E   + ++L  + 
Sbjct: 225 YNDDNEILHQHFTDPERRASLPMKLVALSLEKNLGDEYEHCAYK---ENGRLVLKLTNEK 281

Query: 281 MEVVH--------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            E +            G H   N L      S L  D     K++  F   E R +  R 
Sbjct: 282 -EWLIEENQISTKQFRGQHNIYNALTAAAAASALGIDKKFIEKSILSFEGVEHRLEFVRA 340

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S      ++  A+  +         + + + G   +  + ++ F    
Sbjct: 341 V---NQVDYINDSKATTVNALWYALDTV-------TPKIVLIAGGRDKGNDYTKVF---- 386

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                   +  V   G     +  A      V  + ++D            GD V++
Sbjct: 387 --SFVKEKVRAVVAIGESQEKVVQAFGNLTKVMKAFSLDEAVRLASQEAEAGDTVLL 441


>gi|145628987|ref|ZP_01784786.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148827263|ref|YP_001292016.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
 gi|144978490|gb|EDJ88213.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148718505|gb|ABQ99632.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
          Length = 453

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 144/409 (35%), Gaps = 34/409 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVLA--LKDALPR 420
            G  R +AVL    E    +     H D  ++         V++     L+  + D   +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKD--DIAPALGRADEVFMLQPEQLSWEVADIANQ 403

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
            +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 404 CVQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 501

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 119/359 (33%), Gaps = 57/359 (15%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              L AL +    A       +IAITG+ GKTT   +  +       +    G+ +    
Sbjct: 109 AQALAALREERGYA-----PKLIAITGTNGKTTVTSLTGLLCERAGLSVQVAGNISPS-- 161

Query: 149 VPLTLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             L + R  +D D      + EL    L      TH ++  +A +  I   HL     + 
Sbjct: 162 -ALDVLRQCLDSDSLPQAWVLELSSFQL----HTTHSLQADVATVLNITQDHLDWHGDMA 216

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              + KA IF          LN DD+    L +   A       +FG  +          
Sbjct: 217 CYVADKARIF---GTDTIRVLNRDDAAVMQLASTGTAP-----VTFGSDEALSPDCFGLL 268

Query: 265 QCSEQSWMEVQLQGKSMEVV---------------------HHGIGYHMAQNMLMTLGIV 303
             +   W+ V ++ ++ +                           G H A N L  L + 
Sbjct: 269 NENGMQWLAVAIEAEAEKKPTKRGPAEVRAVSSKRLMPADALKIRGQHNALNALAALALC 328

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +   +   +  L  +H   G   R          T  D+S   N  +  AA++ L   
Sbjct: 329 RAIGLPLAPLLHGLRDYH---GEPHRVELVTTLAGVTYFDDSKGTNVGATVAALTGLG-- 383

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
               +G+ + + G   +  + +      LA  ++  ++  V L G    A++ AL   I
Sbjct: 384 -LQQQGKLVLIAGGDGKGQDFTP-----LAAPVA-RHVRAVLLIGKDADAIRAALAGHI 435


>gi|120437196|ref|YP_862882.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
 gi|117579346|emb|CAL67815.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
          Length = 450

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 139/391 (35%), Gaps = 45/391 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKT+   M+   +   +K    +      +    
Sbjct: 87  LKIYSYPEFLYEQSKNKTRVVIGGSHGKTSITSMILHVMKYHEKEIDYM--VGASLEGLG 144

Query: 152 TLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
               +  D DF + E     S   + R   HL +P+IA+++ IA  H++ F   E     
Sbjct: 145 NPVHLTKDNDFIVIEGDEYLSSALDRRPKFHLYQPNIALLSGIAWDHINVFPTYENYVEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                + +   G +  N +DS  + L  ++     K  Y             ++    + 
Sbjct: 205 FKIFIDSIINGGILVYNEEDSVVKKLAEETENPIRKHAY----------YTPEYHTDGDH 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + ++V       E+     G H   N+     I   +  D D   +A++ F+    R ++
Sbjct: 255 TILDVP----EGELPLEIFGKHNLNNLAGAKWICQHMGVDEDDFYEAIATFNGASKRLEK 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +   ++I + +  +P+ + A  + + +  P    + IA L    E+   S S +
Sbjct: 311 V----AESPSSIIFKDFAHSPSKVSATTAAVKEQFPE--RKLIACL----ELHTYS-SLN 359

Query: 390 IDLAEVL--SLYNISH-VWLSGFHVLALKD----------ALPRSIHVHYSETMDGLFLF 436
            +  +    SL      +       +A+K              +  ++    T +     
Sbjct: 360 AEFLKEYKDSLAEADEALVFYSPDAVAIKKLEAVTENQIREAFQKENLKVYTTSEEFKAE 419

Query: 437 IQSSLVDGDVVVVKSSNSCG---FYRLINLL 464
           ++++ ++  V+++ SS + G      L  ++
Sbjct: 420 LKNTDLNNSVLLMMSSGNYGGLDMEELKEMI 450


>gi|304437326|ref|ZP_07397285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369582|gb|EFM23248.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 469

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 80/284 (28%), Gaps = 32/284 (11%)

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           ++   TH    HI     I P H+     +E   + K ++F        + LN DD    
Sbjct: 183 QMEATTHF-HAHIVAELNITPDHIVRHGSMEVYQAMKEKLFAAQTAEDYLVLNADDPHTR 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  ++             ++ A  +              V +            G H  
Sbjct: 242 GMAERAAGRVCLFSRREELAEGACVRADGMIVIRWDGAEHVLIPADE----LGIPGAHNV 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N+L    +              L  F   E    R          +  ++S   N  S 
Sbjct: 298 ENVLAASAMALFAGVTPAEMRPVLRAFKGVE---HRIEFVRALAGVSYYNDSKATNTDSA 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
             A+          +G  I + G    + ++GE  +  H  +           + L G  
Sbjct: 355 IKALEAF-------DGHIILIAGGDDKLTDLGEFMELVHARV---------DELILVGDA 398

Query: 409 ---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              F   A    +P          M+      +   V+G +V++
Sbjct: 399 AERFAAAARDAGIPEEQIHRVGYHMEKAVHLARELAVEGQIVLL 442


>gi|71736429|ref|YP_276770.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556982|gb|AAZ36193.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 472

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 122/381 (32%), Gaps = 39/381 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  ML   L          G     I     ++    
Sbjct: 117 WLADHVLQDRWVLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLG 173

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  F + E            +  V  RP  A++  +   H   F  +  I      +   
Sbjct: 174 DTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRT 233

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     +     +        ++T           +Q R      + S  EV  
Sbjct: 234 IPSEGLVIHPTTEPALSRVIEMGCWTPVQT-----TGDGGQWQARLL--SEDGSRFEVLF 286

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+    V     G H   N L TL     +       ++ALS F   +   +R      
Sbjct: 287 EGELQGAVEWDMTGQHNVANALATLAAARHVGVVPSLGVQALSAFKSVK---RRMEKVAE 343

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLA 393
               T+ D+ +  +P ++   +  L      G+   IAV+    E    S     H D  
Sbjct: 344 VRGITIYDD-FAHHPTAIATTLDGLR--KKIGDAPIIAVI----EPRSNSMKLGAHRD-G 395

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              S+     V        G+ + A       S+     ++++ +   + S +  G  +V
Sbjct: 396 LPESVSQADQVVWYAPPNLGWDLAATVAG--GSVPSTVCDSLEAIIARVHSQVQPGTHIV 453

Query: 449 VKSSNSCGF----YRLINLLL 465
           +  SN  GF     +L   L 
Sbjct: 454 IM-SNG-GFGGLHGKLAEALK 472


>gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           avermitilis MA-4680]
 gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces avermitilis MA-4680]
          Length = 467

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 119/368 (32%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT +ML   L++     A +G+    +   + L
Sbjct: 97  GDVELAWRLRGPGSAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVGNIGVSLLDAV-L 155

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                DV     EL    L         +R H A +  IAP HL     +E   + K  I
Sbjct: 156 GEETYDV--LAVELSSYQL----HWAPSLRAHSATVLNIAPDHLDWHGSMEAYTADKGRI 209

Query: 214 FEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +EG         N  D   E L +A     G + + ++ G    +   + +         
Sbjct: 210 YEG--NRVACVYNVADKATEDLVRAADVEEGCRAVGFTLGTPGPSQLGVVEGILVDRAFV 267

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            + Q   + +  V   H    H   N L    +              L  F        R
Sbjct: 268 EDRQKNAQELAEVADVHPPAPHNIANALAAAALARAFGVPASAVRDGLRAF---RPDAHR 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +    T ID+S   N  + +A+++             I  +      G       
Sbjct: 325 IAHVADVDGVTYIDDSKATNTHAAEASLAAYGS---------IVWIAGGLAKGASFDELV 375

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSL 441
              A+ L       V L G     +++AL R         +D              +   
Sbjct: 376 AKSAQRLR-----GVVLIGADRALIREALARHAPEVPVVDLDRTDTGAMPAAVQEARRLA 430

Query: 442 VDGDVVVV 449
           V GD V++
Sbjct: 431 VAGDTVLL 438


>gi|253581421|ref|ZP_04858647.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           varium ATCC 27725]
 gi|251836785|gb|EES65319.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           varium ATCC 27725]
          Length = 435

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 118/338 (34%), Gaps = 38/338 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             K+ IIA+TG+ GKTTT   +T  L          G+          +     D+D+ +
Sbjct: 88  EIKSKIIAVTGTNGKTTTTSKITELLQYAGFKAEYAGNIGVSF---AEVLLKYKDLDYIV 144

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P I ++  + P HLS +   E+    K  I +   +     
Sbjct: 145 LELSSYQLENL----LDFKPWITMVINLTPDHLSRYKDTEDYYKTKFNIGKNQTEKDYFI 200

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV- 283
            N D    E+++ +    G K   S   +K  DF +   K   +         G+ +E  
Sbjct: 201 FNLDSK--EVVEREKFIFGKKIKISQNITKECDFWVENGKLYGK--------DGEILECG 250

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N+L  +    I+    +   + L      E    R     N G    I+
Sbjct: 251 KLSLKGKHNLENILFIVATAKIIGIQNEKIREFLYNTGTIE---HRMEDFFNYGKIKFIN 307

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S K A+    Q         + + G   +  + S      LAE++ + +   
Sbjct: 308 DSKGTNIDSTKFAVEAFDQC--------VLICGGFDKKLDWSP-----LAELIKI-HAKE 353

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +L G     +   L       Y  +   L   ++S L
Sbjct: 354 TYLIGETADEINRILLEKG---YDSSKIFLLRDLRSCL 388


>gi|317483072|ref|ZP_07942073.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915478|gb|EFV36899.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 512

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 112/342 (32%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 113 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 173 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 224

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 225 AHAGRATGHVIISIDDPDGLAVLEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 284

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A  
Sbjct: 285 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAN 344

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 345 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 398

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 399 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 436


>gi|307720528|ref|YP_003891668.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978621|gb|ADN08656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 409

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 110/341 (32%), Gaps = 69/341 (20%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  II +TG+ GK+T   ++   L +  K     G+          +     D    
Sbjct: 93  KHFKNQIIGVTGTKGKSTLVTLIDSLLKNAGKKSVLCGNIGTP---AFDILENLDDETTI 149

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L  + +       HIA++T +   HL  +  ++E  SAK  IF   +K    
Sbjct: 150 VMELSSHQLYHVNYSV-----HIAILTNLFEEHLDYYKDVDEYYSAKFNIFLHQKKNDIF 204

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N        L  K                    +     +   +  ++  LQ   +  
Sbjct: 205 IYN--------LPQKLT------------------RGYNVHENELKYNVDFNLQNGFIHK 238

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               I   + +          IL  D    ++ +  F        R     N    + I+
Sbjct: 239 STLQILEKLKE----------ILALDDAVYLRTIQEFKTLP---HRLEFVKNIKGVSYIN 285

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNIS 402
           +S +  P +   A+ +L  +                 +G   +  H D+  + L   +I 
Sbjct: 286 DSISTIPQATIEAVKILKNVDTLI-------------LGGNDRGVHYDVLIDFLQKSDID 332

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           ++ L       + DAL      H  E   GL  FIQ++L +
Sbjct: 333 NIILFSDTGKKIYDAL------HVKEKQKGL--FIQNNLQE 365


>gi|209519093|ref|ZP_03267899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia sp.
           H160]
 gi|209500465|gb|EEA00515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia sp.
           H160]
          Length = 503

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 154/459 (33%), Gaps = 73/459 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ----KGAGLVVVNT----------DMVASI 78
           D+R + P     A++    D  DF+  A      +G  LV ++            ++ + 
Sbjct: 41  DTREVPPN--LSALEAHGVDA-DFVGGAFSPALLEGVELVAISPGLSPLAADLLPLITAA 97

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IPV+G  ++      L           +IAITG+ GKTTT  +  +      K  A
Sbjct: 98  REQGIPVWG--ELELFSQALRTLGESGYAPKVIAITGTNGKTTTTSLTGLLCERAGKKVA 155

Query: 139 CIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             G+ +  +   L+ A       D  + EL    L      +H   P  AV+  I   HL
Sbjct: 156 VAGNISPSLLDKLSEAIDQTALPDVWVLELSSFQL----ETSHTFTPDAAVVLNITQDHL 211

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--- 254
               G++  A+AK  IF          LN DD+    L +   A G   I +FG ++   
Sbjct: 212 DWHGGLDAYAAAKGRIFGTQT---VRVLNRDDARVMALAS---AGGDAHIVTFGVTEPKN 265

Query: 255 NADFQL-----------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           + DF L                       ++ ++    +  ++ L+           G H
Sbjct: 266 DGDFGLLRDNGMVWLVEAQDRDASDEPTTKRRRKNEAAATPDIALKRLMPADALRIRGLH 325

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N L    +   +       +          G   R     +      +D+S   N  
Sbjct: 326 NAANALAAYALARAIGLPGAPLLHG---LREYRGEPHRVELIASIDGIDYVDDSKGTNVG 382

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  AA+  L+Q       R + + G   + G+  +     +           V L G   
Sbjct: 383 ATVAALDGLAQ-------RVVLIAGGDGK-GQAFEPLAAPVMRWCRA-----VMLIGRDA 429

Query: 412 LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++ AL    + +    T++       +    GD V++
Sbjct: 430 PQIRAALEHSGVAMTDHATLEDATRAATALAQPGDAVLL 468


>gi|325276639|ref|ZP_08142373.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas sp. TJI-51]
 gi|324098224|gb|EGB96336.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas sp. TJI-51]
          Length = 449

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 123/370 (33%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L     +    IG    +  V   L   P    F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGATP----FFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P  A++  +   H   F  +  I      +   +   G +   
Sbjct: 161 EYDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPSEGLVI-- 218

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
                 E    +   +G  T +++ G+      +L      ++ S  EV  +G++  VV 
Sbjct: 219 --HPTTEQALERVIGMGCWTPVHTTGEGGQWQARL----LSADGSRFEVLFEGQAQGVVD 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L TL     +       I+ L  F   +   +R          T+ D+
Sbjct: 273 WALTGQHNVANALATLAAARHVGVVPAMGIEGLCAFKSVK---RRMEKVAEVQGVTIYDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNIS 402
            +  +P ++   +  L      GE   IAV+    E    S     H D     S+ +  
Sbjct: 330 -FAHHPTAIATTLDGLR--KRVGEAPVIAVI----EPRSNSMKLGAHRD-GLPESVNDAD 381

Query: 403 HVWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
            V       L       A    +    +++++ +   I+     G  VV+  SN  GF  
Sbjct: 382 QVIWYAPANLGWDLAATAAQCKVPSVVADSLEAIIERIKGQARPGTHVVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALK 449


>gi|298489161|ref|ZP_07007182.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156361|gb|EFH97460.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 449

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 122/381 (32%), Gaps = 39/381 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  ML   L          G     I     ++    
Sbjct: 94  WLADHVLQDRWVLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLG 150

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  F + E            +  V  RP  A++  +   H   F  +  I      +   
Sbjct: 151 DTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRT 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     +     +        ++T       +   +Q R      + S  EV  
Sbjct: 211 IPSEGLVIHPTTEPALSRVIEMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLF 263

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+    V     G H   N L TL     +       ++ALS F   +   +R      
Sbjct: 264 EGQLQGCVEWDMTGQHNVANALATLAAARHVGVVPSLGVQALSAFKSVK---RRMEKVAE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLA 393
               T+ D+ +  +P ++   +  L      G+   IAV+    E    S     H D  
Sbjct: 321 VRGITIYDD-FAHHPTAIATTLDGLR--KKIGDAPIIAVI----EPRSNSMKLGAHRD-G 372

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              S+     V        G+ + A       S+     ++++ +   + S    G  +V
Sbjct: 373 LPESVSQADQVVWYAPPNLGWDLAATVAG--GSVPSTVCDSLEAIIARVHSQARPGTHIV 430

Query: 449 VKSSNSCGF----YRLINLLL 465
           +  SN  GF     +L   L 
Sbjct: 431 IM-SNG-GFGGLHGKLAEALK 449


>gi|145631200|ref|ZP_01786974.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R3021]
 gi|144983298|gb|EDJ90789.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R3021]
          Length = 453

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 142/407 (34%), Gaps = 30/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++AI+G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAISGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            G  R +AVL    E    +     H D +A  L   +   +         + D   + +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKDEIAPALGRADAVFMLQPEQLSWEVADIANQCV 405

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
              +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 406 QPAYWNANLDRLVDMIVTEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|9971921|gb|AAG10483.1|AF279106_45 predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 436

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 100/290 (34%), Gaps = 43/290 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIF 165
              ++AI+G+ GKTTT  MLT  +    +     +G  +N+I     L          + 
Sbjct: 100 NKKVLAISGTHGKTTTSYMLTHIMLDQGRDVGFLVGGISNNISGSACLG----SDGTFVI 155

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +   P   VI  I   H   F+ +++I      + + +   G +
Sbjct: 156 EADEYDSAFFDKRSKFIHYSPSTIVINNIEFDHADIFNNLDDIKRQFHHLIKIIPSNGNV 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD     L           I+S            +    +    +E     K+++ 
Sbjct: 216 VYFADDKNIRDLIDMG-------IWS-----------NQIAINNNAHSIEAVYSDKTLKY 257

Query: 284 --------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       IG H  +N +  +         +  +IK+L+ F   +   +R     +
Sbjct: 258 EESIYSLNELPLIGEHNFKNYISAILAAKTDGIQIQDSIKSLASFDGVK---RRLEYKGS 314

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                + D+ +  +P +++ + + L   +P  +     +LG + E+G  +
Sbjct: 315 FDGIEIYDD-FAHHPTAIEFSSNALVTQNPSKK-----ILG-LIELGSNT 357


>gi|68248734|ref|YP_247846.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
 gi|68056933|gb|AAX87186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
          Length = 452

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 142/407 (34%), Gaps = 31/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++AI+G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAISGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALR--DK 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            G  R +AVL    E    +     H  D+A  L   +   +         + D   + +
Sbjct: 349 VGGVRILAVL----EPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQCV 404

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
              +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 405 QPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 450


>gi|257482348|ref|ZP_05636389.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320322384|gb|EFW78478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330718|gb|EFW86693.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330984504|gb|EGH82607.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009821|gb|EGH89877.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 449

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 122/381 (32%), Gaps = 39/381 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  ML   L          G     I     ++    
Sbjct: 94  WLADHVLQDRWVLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLG 150

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  F + E            +  V  RP  A++  +   H   F  +  I      +   
Sbjct: 151 DTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRT 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     +     +        ++T       +   +Q R      + S  EV  
Sbjct: 211 IPSEGLVIHPTTEPALSRVIEMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLF 263

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+    V     G H   N L TL     +       ++ALS F   +   +R      
Sbjct: 264 EGQLQGCVEWDMTGQHNVANALATLAAARHVGVVPSLGVQALSAFKSVK---RRMEKVAE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLA 393
               T+ D+ +  +P ++   +  L      G+   IAV+    E    S     H D  
Sbjct: 321 VRGITIYDD-FAHHPTAIATTLDGLR--KKIGDAPIIAVI----EPRSNSMKLGAHRD-G 372

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              S+     V        G+ + A       S+     ++++ +   + S    G  +V
Sbjct: 373 LPESVSQADQVVWYAPPNLGWDLAATVAG--GSVPSTVCDSLEAIIARVHSQAQPGTHIV 430

Query: 449 VKSSNSCGF----YRLINLLL 465
           +  SN  GF     +L   L 
Sbjct: 431 IM-SNG-GFGGLHGKLAEALK 449


>gi|307246327|ref|ZP_07528406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307253047|ref|ZP_07534932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255311|ref|ZP_07537124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259746|ref|ZP_07541467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852797|gb|EFM85023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306859505|gb|EFM91533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861760|gb|EFM93741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866214|gb|EFM98081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 439

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 134/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSSGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 337 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ- 393

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 394 -PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 439


>gi|255098853|gb|ACU00766.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bolletii]
          Length = 181

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 14/185 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP++ V+T I   HL +F   E  ++   E  E L   G + +  DD     L  ++H  
Sbjct: 2   RPNLIVVTNIEADHLDHFGSAEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHER 61

Query: 243 GIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMA 293
           GI+ +  +G +  A+        QLR W+     +  ++QL G+S    +     G HMA
Sbjct: 62  GIR-VRGYGSAGQAEAGGVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMA 120

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +   + + A VD  +  L+ F   EG  +R+    +     + D+ Y  +P  +
Sbjct: 121 LNALAAVVAAAEIGASVDDVLDGLAGF---EGVRRRFELVGSVESVRVFDD-YAHHPTEV 176

Query: 354 KAAIS 358
           +  + 
Sbjct: 177 RTVLQ 181


>gi|312869526|ref|ZP_07729681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
 gi|311094973|gb|EFQ53262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
          Length = 458

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 121/349 (34%), Gaps = 39/349 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               ++++TGS GKTTT  +  + L+          G+          +A      D  +
Sbjct: 110 FAGHLVSVTGSNGKTTTTTLTQLMLAKSSTHNVKYAGNIGVSFSR---VAEELGPEDTLV 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L         + PHIA+IT I   HL      E   +AK  I         + 
Sbjct: 167 TELSSFQLLG----APTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTPDDFLI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--E 282
           +N+D   ++ +  ++ A    T+  F +   +      +++        +  +G+ +   
Sbjct: 223 MNWDRDEWQEIARRTRA----TVVPFSRQGKS--HAGAYEEDGA-----IYWRGERIMAA 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG     N L  +    +     +  +   SV     G   R +  L+       
Sbjct: 272 RDIRLIGPQNVGNALAAIAAAKLSGVSNEDIV---SVLTTFSGVRHRLQYVLDYQGRRFY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S + +  + + A+    Q         + +L    + G   +       E     ++ 
Sbjct: 329 NDSKSTDIEATEVALQGFDQ--------PVILLAGGLDRGYTFERLVPYFKE-----HVK 375

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVV 449
            + + G     +KDA  ++      E+ + +    ++  +   GDV+++
Sbjct: 376 GIIVFGQCKDKMKDAAEQAGIPMIIESENAVTAVPEAWKISEPGDVILL 424


>gi|307261892|ref|ZP_07543554.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868439|gb|EFN00254.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 439

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 133/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 337 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ- 393

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 394 -PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 439


>gi|330939948|gb|EGH43152.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 449

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 122/369 (33%), Gaps = 39/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHH 286
            +     +        ++T       +N  +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIEMGCWTPVQT-----TGQNGQWQARLL--SEDGSRFEVLFEGEFQGTVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGQHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDASIIAVV----EPRSNSMKLGAHRD-GLRESVSQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLL 464
              +L   L
Sbjct: 440 LHGKLAEAL 448


>gi|60117246|gb|AAX14404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 143

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 7/143 (4%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLE 218
           V+  + E     + + R   H ++   A  T  +  HL     +      K  +F E L 
Sbjct: 6   VEHLVLESSSHGIDQYRI--HGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLP 63

Query: 219 KTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +  T  LN D D +  LLK          + ++GK K +D  L +         + V++ 
Sbjct: 64  EGKTAILNADIDEYGALLKIAEKRSN--KVVTYGK-KGSDITLLEQTSTPNGQHLTVKID 120

Query: 278 GKSMEVVHHGIGYHMAQNMLMTL 300
            +        +G   A N+L  +
Sbjct: 121 NQIYNTFFPVLGKFQAYNLLCAI 143


>gi|294506459|ref|YP_003570517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
 gi|294342787|emb|CBH23565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
          Length = 481

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 120/354 (33%), Gaps = 39/354 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVD 161
            A I+AITG+ GKTTT  +      +       +     G+        +         D
Sbjct: 128 DAPIVAITGTNGKTTTTSLTGHVFRTAFADTPGREAIVAGNIGYPFSDYVLE---TEPTD 184

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
             + E+    L  +       RP ++V+  I P HL  +    E  A AK  IF    + 
Sbjct: 185 VVVLEVSSFQLDHVETF----RPRVSVLLNITPDHLGRYDHDFEAYAQAKHNIFRNQGEG 240

Query: 221 GTIFLNYDDSFFELLKAKSHA-LGIKT--IYSFGK-SKNADFQLRKWKQCSEQSWMEVQL 276
             +  N DD        ++ A  G++   I   G  +  A F+  +    ++     +  
Sbjct: 241 DVVVYNRDDDDVRDAVEEAAAEQGVRPMAITREGVPAAGAGFRDGRIVLRTDDEDDSLMP 300

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           Q +         G H   N L       ++  + D   ++LS F     R +  R     
Sbjct: 301 QDE-----LALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGFEGVPHRLEEVRTV--- 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N  ++  A+          +   + + G     G    + + DL + L
Sbjct: 353 DDVLYVNDSKATNVNAVWYALESF-------DRPIVLIAG-----GRDKGNDYTDL-KPL 399

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
               +  V   G     ++  L      H  + TM+      Q +   GDVV++
Sbjct: 400 VRDQVRAVVALGESTEKVERELGGEAPDHSRAATMEDALTQAQRAAQPGDVVLL 453


>gi|325971612|ref|YP_004247803.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta sp. Buddy]
 gi|324026850|gb|ADY13609.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta sp. Buddy]
          Length = 486

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 44/324 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI----KKTYACIGSYNNHIGVPLTLARMP 157
           A L  +    A+ G+ GKTTT  + +  L          YA  GS  + +          
Sbjct: 101 ALLTKRQDSYAVAGTHGKTTTCSVASHLLGQATKSQFPFYAVYGSSQSGLDRYPY----- 155

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +  +FE          FL++ +R    ++T+I   H   F  I+++  +   +   L
Sbjct: 156 YGSECALFEACEYQ---DHFLSYDLR--AVLVTSIEYDHPDYFQSIDQVKRSFESLVTNL 210

Query: 218 EKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  G      DD     L A   A     T+ ++G S    F++   +   ++  + V  
Sbjct: 211 KGGGIFLYCADDEGASALSAYVLAHRKDITVVAYGFSAPGPFRI--MRNGPDRYTLAVL- 267

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-------------------VDTAIKAL 317
             + +          +  + +  L +   +  D                           
Sbjct: 268 --EDLPFTIQAKAEALVCDHIGALVLSLAMILDRPEPKLYVQDQGLITDEVLPTLVASLS 325

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                      R      Q     ID+ Y  +P  +  ++  L    P  +   I     
Sbjct: 326 RHLRSYTACIGRTEVLFTQDGVVYIDD-YAHHPTEIHTSLEELRARYPRYKMLVIFC--- 381

Query: 378 MCEMGELSQSFHIDLAEVLSLYNI 401
                  + +FH +  E L+  + 
Sbjct: 382 -PHTASRTLAFHHEFVEQLAQCDA 404


>gi|303250757|ref|ZP_07336952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650362|gb|EFL80523.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 454

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 134/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 67  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 127 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I     D   +          ++ 
Sbjct: 184 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSSGCILSAAADENVQNTLKMGSYSELQF 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 244 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 297 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 352 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ- 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 409 -PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 454


>gi|313496921|gb|ADR58287.1| UDP-N-acetylmuramate [Pseudomonas putida BIRD-1]
          Length = 449

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 120/369 (32%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGDTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPGEGLVI--- 218

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                E    +   +G  T + + G+      +L       + S  EV  +G+   VV  
Sbjct: 219 -HPTTEQALERVIGMGCWTPVQTTGEGGQWQARL----LSPDGSRFEVLFEGEVQGVVDW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I+ LS F   +   +R          T+ D+ 
Sbjct: 274 ALTGQHNVANALATLAAARHVGVVPAMGIEGLSAFKSVK---RRMEKVAEVQGVTIYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      GE   IAV+    E    S     H D     S+ +   
Sbjct: 330 FAHHPTAIATTLDGLR--KRVGEAPVIAVI----EPRSNSMKLGAHRD-GLPESVNDADQ 382

Query: 404 VWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V       L       A    +    +++++ +   I+     G  VV+  SN  GF   
Sbjct: 383 VIWYAPANLGWDLAGTAAQCKVPSVVADSLEAIIERIKGQARPGTHVVIM-SNG-GFGGL 440

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 441 HGKLAEALK 449


>gi|121612221|ref|YP_001000734.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005653|ref|ZP_02271411.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|189028980|sp|A1W043|MURC_CAMJJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87249231|gb|EAQ72192.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 431

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 127/341 (37%), Gaps = 40/341 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYTQFLDVAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   +    G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYVKLGGYKKITAIFEPHRYTRLATNL-KE 353

Query: 392 LAEVLSLYNISH-----VWLSGFHVLA--LKDALPRSIHVH 425
            A+      +       V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFE--GVDELVILPVYAAGEEPIELDLKAVFPKALFVE 392


>gi|216263492|ref|ZP_03435487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
 gi|215980336|gb|EEC21157.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
          Length = 449

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 125/371 (33%), Gaps = 43/371 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIA+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 108 KNPIIAVTGTKGKSTLVSLLYQALKKKYPRVKLGGNIGVS---PLSFFDQLDGKSPLILE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P +++IT +   H + +S  ++    K++IF        I + 
Sbjct: 165 LSSWQLQSLENF----NPILSIITNVYNDHQNYYSNFDDYIIDKSKIFVNQTSG--IVII 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    +     +     + +    L G   E    
Sbjct: 219 QDKAYYKYF---SKFESKAKVILFSEFNPCNLDQDIFYSNKGEVYFNDNLIGSFFESQV- 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                     L+   +   L  D++   + L  F   E R +  +   N       +++ 
Sbjct: 275 ----VFMIPKLIAFFVAYYLNIDLNHMFQILKNFKGIEHRLEFVKLVRN---VMFYNDTA 327

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L             ++G     G          +++++L     + +
Sbjct: 328 STIPDSTVLSVKSLKTNDNCIN----LIVG-----GTDKNLDFSSFSKIINLVKA-WILI 377

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SS-----------N 453
            G   + + + L + SI     +++ G   +       GD+V+   +S            
Sbjct: 378 KGSATVKIINVLEKSSIQYFVFDSLRGAVNYAFEISSPGDIVLFSPASASFELFNNEFDR 437

Query: 454 SCGFYRLINLL 464
              F +L+++L
Sbjct: 438 GLQFKKLVDML 448


>gi|111115413|ref|YP_710031.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
 gi|122956339|sp|Q0SMS3|MURD_BORAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110890687|gb|ABH01855.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
          Length = 451

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 125/371 (33%), Gaps = 43/371 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIA+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIIAVTGTKGKSTLVSLLYQALKKKYPRVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P +++IT +   H + +S  ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPILSIITNVYNDHQNYYSNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    +     +     + +    L G   E    
Sbjct: 221 QDKAYYKYF---SKFESKAKVILFSEFNPCNLDQDIFYSNKGEVYFNDNLIGSFFESQV- 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                     L+   +   L  D++   + L  F   E R +  +   N       +++ 
Sbjct: 277 ----VFMIPKLIAFFVAYYLNIDLNHMFQILKNFKGIEHRLEFVKLVRN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L             ++G     G          +++++L     + +
Sbjct: 330 STIPDSTVLSVKSLKTNDNCIN----LIVG-----GTDKNLDFSSFSKIINLVKA-WILI 379

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SS-----------N 453
            G   + + + L + SI     +++ G   +       GD+V+   +S            
Sbjct: 380 KGSATVKIINVLEKSSIQYFVFDSLRGAVNYAFEISSPGDIVLFSPASASFELFNNEFDR 439

Query: 454 SCGFYRLINLL 464
              F +L+++L
Sbjct: 440 GLQFKKLVDML 450


>gi|326202902|ref|ZP_08192769.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986979|gb|EGD47808.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 893

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 153/447 (34%), Gaps = 72/447 (16%)

Query: 53  GHDFILHAV------QKGAGLVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           G DF    +       +GA + V       +    S   P   V D +  +         
Sbjct: 421 GIDFSAQDISIPIDNNRGAIIEVNAAPGLRMHLHPSEGAP-INVADAILDMMYPP---NK 476

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------------GVPLT 152
                + A+TG+ GKTTT  ++   LS +        +   ++             V   
Sbjct: 477 PVSIPVAAVTGTNGKTTTTRLIRHTLSLMGYNVGMTSTSGIYVGDECVQKGDNTGPVSAE 536

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAK 210
           +     +VD  + E   +  G +R         + V+  I+  HL     + IE++A  K
Sbjct: 537 VILTNKEVDIAVLE--TARGGIVRRGLGYDLADVGVLINISDDHLGIDGINTIEDLAKTK 594

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWK 264
           A + E ++  G   LN DD     +  ++ +     +  F +  +           +   
Sbjct: 595 ALVVEAVKHDGYAVLNADDGMTPYILERTRS----NVIMFSRGISNPVFKRHCKNPKNIA 650

Query: 265 QCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
               +S++ +Q   K         + +   GI     +N L  +  +  L   +D  +K 
Sbjct: 651 VFVRESFVWIQRNNKKIPLISLDDIPITFGGIVDCNIENSLAAISALIGLNIPLDAIVKG 710

Query: 317 LSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           ++ F P  E    R+       F  +ID  Y+ N A   A +  + +I      R + ++
Sbjct: 711 MNTFQPDMELNPGRFNIFDMGTFKVMID--YSHNIAGYSAVVKFMQRIKAK---RLVGII 765

Query: 376 GDMCEMGELSQSFHIDLAEVLS--------LYNIS-------HVWLSGFHVLALKDALPR 420
           G M   G+   S   ++ E+ +          +I         V       +    A   
Sbjct: 766 G-MP--GDRQDSNLKEVGELCANSFHKIYIKEDIDLRGRRRGEVADIFEQSIISAGAKKE 822

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           ++ + Y ET + L   +  +   GD++
Sbjct: 823 NVEIIYRET-EALEKAMLDA-QPGDLI 847


>gi|149907492|ref|ZP_01896239.1| UDP-N-acetylmuramate-alanine ligase [Moritella sp. PE36]
 gi|149809162|gb|EDM69091.1| UDP-N-acetylmuramate-alanine ligase [Moritella sp. PE36]
          Length = 457

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 100/271 (36%), Gaps = 17/271 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           +IA +G+ GKTTT  M+   L          IG    +      L        F + E  
Sbjct: 93  VIAASGTHGKTTTAAMVAWILEYAGLEPGFLIGGVPQNFTESARLGGGY----FFVIEAD 148

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  +P+  ++  +   H   F  +  I      +   +   G I + 
Sbjct: 149 EYDTAFFDKRSKFVHYQPNTLIMNNLEYDHADIFPDLAAIQRQFHHVVRTVPSNGLILMP 208

Query: 227 YDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
            +    + +KA+     ++ + + +     + +Q +K +  ++ S  EV  +G+   VV 
Sbjct: 209 DNVPALDEVKAQGCWTPVQCLGAEYRGVDGSHWQAKKLR--ADASQFEVYCKGELAGVVK 266

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + IG H  QN +M +        ++  AI  L  F   +   +R           + D+
Sbjct: 267 WNLIGEHNLQNGMMAIAAAHYAGVELSQAITGLGEFKTPK---RRMEVKGEVQGIRVYDD 323

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +  +P ++   ++ L     +   R IAVL
Sbjct: 324 -FAHHPTAIATTLAGLRAAVGNE--RIIAVL 351


>gi|300021776|ref|YP_003754387.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523597|gb|ADJ22066.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 471

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 104/329 (31%), Gaps = 30/329 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  I ITG+ GK+TT  ++   L    +     G+    +         P      + 
Sbjct: 112 PDAPFIGITGTNGKSTTTALIAHILRHAGRDVQLGGNIGRAVL----TLEDPAPERCHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +     LT  ++P + V+  + P HL     IE  A+ K  + +G E      +
Sbjct: 168 ELSSFQID----LTPTLKPTVGVMLNVTPDHLDRHGTIENYAAVKERLVDGAE---VAAV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQGKSME 282
             DD F   +  +         +S  KS    + L          E   +++   G    
Sbjct: 221 GLDDEFGLAMLQRRIQKAPAIAFSAEKSIAPGYSLLDDTIICSNREALAVKLASLGGIAT 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +       +    +      ++ +    D  +          G   R       G    +
Sbjct: 281 LRGKHNAQNALAAVAAVRECLNWIGQSSD--LDWQGALASFPGLPHRMEEIGRIGNVLFV 338

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S + A+     +S   +   IA  G   + G +S +             ++
Sbjct: 339 NDSKATNADSTEKAL-----LSFPRDVFWIA--GGKPKAGGIS-ALEKYFG------GVA 384

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMD 431
            V+L G         L   +    S T+D
Sbjct: 385 KVYLIGESSEDFAQTLEGKVTFERSGTLD 413


>gi|296122916|ref|YP_003630694.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015256|gb|ADG68495.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 871

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 125/391 (31%), Gaps = 63/391 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------- 155
           +  ++ +TG  GKTTT  ++   L           S    +   +               
Sbjct: 476 RIPLVCVTGVNGKTTTSRLVASILRQAGIKVGVATSDGIVVEDRVIELGDCAGPKSARAV 535

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA-PAHLSNF--SGIEEIASAKA 211
            +   V+  + E G    G +R      +  +AV+T ++ P HL  +    +E++ S K 
Sbjct: 536 LLNPTVEAAVLEAG--RGGILREGLGFDKCDVAVVTNLSEPDHLGEYDIHTVEKMYSVKR 593

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-------KTIYS--FGKSKNADFQLRK 262
              + +   G   LN  D +   +   S    I       + + S    + K   F    
Sbjct: 594 TPVDVVMPGGFAVLNAADPWVAKMSTLSAGGVIFFARDERQPVLSQHRSEGKKVVFVRDG 653

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH- 321
           W    +       ++   +   H G       N+L        L          L  F  
Sbjct: 654 WIVAGDGGLSSQIVRLADVPCTHGGRIGFQIDNVLAATAAAWGLKIPFSAIAAGLQHFQG 713

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                  R+      G   ++ +    NP+++KA I+ L   S     R++ V       
Sbjct: 714 NLADDPGRFNVFQLGGKTLIVVD--ARNPSALKATIAGLEAFSSQ---RKLVVYA----- 763

Query: 382 GELSQSFHIDL---AEVLSLY---------------NIS---HVWLSGFHVLALKDALPR 420
              +   H D+    E+L+ +                      + L+     A  + L  
Sbjct: 764 -AENDRIHSDITQQGELLAEHFQNFYLYHLPGCATTGADAPRELLLASIRATADSEKLCV 822

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++   + + +D  +        +GDV+++++
Sbjct: 823 NLEEDWQKAVDAAW----HDFREGDVLLIQA 849


>gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
 gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
          Length = 474

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 123/368 (33%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +G+    +   + L
Sbjct: 99  GDVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIGVSLLDAV-L 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A  P DV     EL    L         VRPH A +  +AP HL     +   A+ K  +
Sbjct: 158 AEEPYDV--LAVELSSYQL----HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRV 211

Query: 214 FEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +EG         N  D   E L +A     G + I ++ G  + ++  + +         
Sbjct: 212 YEG--NQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVVEGYLVDRAFV 269

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +   Q + +  V        H   N L    +            + L  F P      R
Sbjct: 270 PDRAQQAQELAEVADVDPPAPHNIANALAAAALARAFGVPATAVREGLRAFRPDP---HR 326

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       +D+S   N  + +A+++             I  +      G       
Sbjct: 327 IEHVATIDGVAYVDDSKATNTHAAEASLAAYEP---------IVWIAGGLAKGASFDELV 377

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSET--MDGLFLFIQSSL 441
              A+ L       V L G     +++AL R       + +  ++T  M           
Sbjct: 378 QGAAKRLRA-----VVLMGRDRALIREALARHAPNVPVVDLDRADTGAMSEAVREAAGLA 432

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 433 ESGDTVLL 440


>gi|239621168|ref|ZP_04664199.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515629|gb|EEQ55496.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 505

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 112/342 (32%), Gaps = 38/342 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL 153
           ++  + A L +    + + G+ GKTTT  ML+  L  +    +YA  G      G  L  
Sbjct: 106 HRSDILALLMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDG 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + E   S     ++      P IA+IT     HL ++       +A   +
Sbjct: 166 GHAGKG-DILVAEADESDGSFAKY-----HPTIAIITNCEADHLDHYGDEAHYRAAF--V 217

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---------ADFQLRKWK 264
                 TG + ++ DD     +     A       ++G +           A   +    
Sbjct: 218 AHAGRATGHVIISIDDPDGLAVLEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASES 277

Query: 265 QCSEQSW--MEVQLQGK-------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           + +      + + L          S  V     G H A+N    +    +L      A  
Sbjct: 278 ETAGSGVEQLTLHLPAAVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAN 337

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A   F    G  +R++        T++D+ Y  +P  + A +    +  P    R I   
Sbjct: 338 AAGTFL---GAARRFQVRGTVKQVTVVDD-YAHHPTEIAALLDAARRRYPDSTIRVIF-- 391

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +   ++ F    A+ L+      V ++G      K A
Sbjct: 392 --QPHLFSRTKFFAHQFAKSLAK--ADDVIITGIFPAREKQA 429


>gi|218562670|ref|YP_002344449.1| UDP-N-acetylmuramate--L-alanine ligase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|25008806|sp|Q9PNN7|MURC_CAMJE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112360376|emb|CAL35172.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
          Length = 432

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 127/341 (37%), Gaps = 40/341 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   L         IG+     G  +
Sbjct: 86  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLLDDA---SVIIGAILKEFGSNM 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 143 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 192 AYTQFLDVAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 243

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 244 FELKDLG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 296

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   +    G  ++I  + +      L+ +   +
Sbjct: 297 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYVKLGGYKKITAIFEPHRYTRLATNL-KE 354

Query: 392 LAEVLSLYNISH-----VWLSGFHVLA--LKDALPRSIHVH 425
            A+      +       V+ +G   +   LK   P+++ V 
Sbjct: 355 FAKAFE--GVDELVILPVYAAGEEPIELDLKAVFPKALFVE 393


>gi|257466675|ref|ZP_05630986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917828|ref|ZP_07914068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691703|gb|EFS28538.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 433

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 144/370 (38%), Gaps = 49/370 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D++  A   +    R     TI+A+TG+ GKTTT   +   L+   K  A  G+      
Sbjct: 75  DEIEIAYQYMVKTNR---NMTIVAVTGTNGKTTTTSKIAELLNYAGKKAAAAGNIGRSF- 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             + +     + ++ + EL    L  +   T    P+I+++T + P HL+ +  +++   
Sbjct: 131 --VDVLLSEENYEYAVLELSSYQLENVYEFT----PYISLVTNLTPDHLTRYETLKDYYD 184

Query: 209 AKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K  I +  ++  + FL N D    E L+ + + +  K I S  K ++AD  +R  K   
Sbjct: 185 TKFRICQNQKEENSFFLYNID---HEELRKRENLMKGKKI-SLSKEQDADTCVRNGK--- 237

Query: 268 EQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +  Q + +  V      G H  +N L  +    +L  D              E 
Sbjct: 238 ------IIFQEEEIMQVSELSLKGNHNLENSLFIITAGKLLGLDTKVI---REFLMNTEP 288

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R       G    I++S   N  S K A+           G  I + G   +  +L+
Sbjct: 289 LEHRMERCFQYGKVQFINDSKGTNIDSAKFALEA-------YPGC-ILICGGFDKKVDLN 340

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL 441
                 LA+++ +  +  V+L G     +K  L      + H++  ET++   L ++   
Sbjct: 341 P-----LADII-IKQVKEVYLIGVIADKIKALLLERNYPADHIYSLETIENSLLDMKKRF 394

Query: 442 VDGD--VVVV 449
              D  ++++
Sbjct: 395 TKEDEELILL 404


>gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 429

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/380 (16%), Positives = 119/380 (31%), Gaps = 59/380 (15%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------V 149
                 S   II ITG+ GKTTT   +   L S+    A  G+    I            
Sbjct: 51  KNHLDMSSIKIIGITGTNGKTTTATTIYKILLSLGFKVALQGTRGFFINETQVEDYSLTT 110

Query: 150 PLTLAR-------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           P+ L         +     F + E+    + + R     +   + + T I   HL     
Sbjct: 111 PIQLGNFVHIQKAIQNGCQFFVMEVSSHAIEQNRI--EGLTFALKIHTNITRDHLDYHKT 168

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           IEE    K      L       +N DD+  +              +++     +D+++ K
Sbjct: 169 IEEYIRVKNSF---LSDESVKLVNIDDNVMKY--------NFTNAFTYSLKNLSDYKVTK 217

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFH 321
           ++       +E   + K+       +G     N++ ++  V I T   ++   + L  F 
Sbjct: 218 YE-FEHGMKVEFSYKEKTYTFTSMMMGIFNIYNLMASIAAVHITTQKSLEDICQTLKNFS 276

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR +            ++D      P  M     VL           I V G     
Sbjct: 277 CVSGRMEIVSL----NPLVIVDF--AHTPDGMD---EVLKSFPNKD---IICVFGAGGNR 324

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHY-SETMD 431
               +    ++A+  S     H+ ++  +         +  +   +    +V    +  +
Sbjct: 325 DSAKRPLMGEVAKKYSK----HIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKE 380

Query: 432 GLFLFIQSSLVDGDVVVVKS 451
            L   I S   +  V++V  
Sbjct: 381 ALKKAI-SLANEKSVILVLG 399


>gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           venezuelae ATCC 10712]
          Length = 474

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 116/368 (31%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +G+    +   + L
Sbjct: 100 GDVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIGVSLLDAV-L 158

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                DV     EL    L         VR H A +  +AP HL     +E  A+ K  I
Sbjct: 159 GEETYDV--LAVELSSYQL----HWAPSVRVHSAAVLNLAPDHLDWHGSMEAYAADKGRI 212

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           ++G         N  D   E L  ++    G + I ++ G    ++  + +         
Sbjct: 213 YQG--NQVACVYNVADKVTEDLVREADVEEGCRAIGFTLGTPGPSELGVVEDLLVDRAFV 270

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            + Q   + +  V        H   N L    +      +       L  F P      R
Sbjct: 271 PDRQKSAQELAEVSDVQPPAPHNIANALAAAALARAFGVEAKAVRDGLKAFRPDP---HR 327

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T +D+S   N  + +A+++             I  +      G       
Sbjct: 328 IELVEEVQGVTYVDDSKATNTHAAEASLAAYDP---------IVWIAGGLAKGATFDELV 378

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSL 441
              A+ L         L G     +++AL R         +D                  
Sbjct: 379 EKSAKRLRGA-----VLIGADRALIREALARHAPEVPVVDLDRTDTGAMSEAVREAARLA 433

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 434 RAGDTVLL 441


>gi|307257474|ref|ZP_07539241.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864054|gb|EFM95970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 439

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 133/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I   G+ K    Q       ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I---GEDK----QWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 337 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQL 394

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 395 --AKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIYQKLLQALKA 439


>gi|28198151|ref|NP_778465.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Temecula1]
 gi|182680782|ref|YP_001828942.1| UDP-N-acetylmuramate [Xylella fastidiosa M23]
 gi|28056211|gb|AAO28114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Temecula1]
 gi|182630892|gb|ACB91668.1| UDP-N-acetylmuramate [Xylella fastidiosa M23]
 gi|307579248|gb|ADN63217.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 471

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 136/424 (32%), Gaps = 41/424 (9%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           H ++   +      VVV      S G+ ++                +A R+      +A+
Sbjct: 52  HGYLPEHIAADCAEVVVG--NALSRGNAAVEALLDSGCRYISGPQWLAERVLPGRDTLAV 109

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHI--------------GVPLTLARMPV 158
            G+ GKTTT  +L   L +  +     IG    +                 PL    +  
Sbjct: 110 AGTHGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEVSA 169

Query: 159 DVDFG-IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            V    + E            +  V  RP + ++  +   H   F  +  I      +  
Sbjct: 170 AVRPLFVVEADEYDTAFFDKRSKFVHYRPRVVILNNLEYDHADIFPDVAAIQRQFHHLVR 229

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G + +N +D   + L           +  FG      +  R     ++ S   V 
Sbjct: 230 TIPGRGRLIVNGED---QRLAEVLAMGCWTPVERFGFDPEFHWSARLI--AADGSRFSVW 284

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G  + +V    +G H   N L  L     +       I +L+ F   +   +R  C  
Sbjct: 285 HEGCEVGQVSWSLLGRHNVLNALAALAAAHAVGVAPAAVIPSLAQFRSVK---RRLECLG 341

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC----EMGELSQSFHI 390
            +G  T+ D+ +  +P ++    + L  +  +    RI V  +M      +G  +Q+   
Sbjct: 342 ERGAVTVYDD-FAHHPTAIA---TTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAP 397

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            L    ++  + H  L       +         VH     +GL   +   +   D VV  
Sbjct: 398 SLQAADTVVFLDHPGLVWNAAGVVAQM---HGQVHVVHDTEGLLSMLNEVVHASDHVVFM 454

Query: 451 SSNS 454
            SN 
Sbjct: 455 -SNG 457


>gi|71909553|ref|YP_287140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Dechloromonas aromatica RCB]
 gi|71849174|gb|AAZ48670.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Dechloromonas aromatica RCB]
          Length = 448

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 121/357 (33%), Gaps = 40/357 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++ + G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 105 VLGVAGTHGKTTTASMLAWILEDANMAPGFLIGGVPLNFGVSARLG----DTPFFVIEAD 160

Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V   P   V+  +   H   FS +  I +    +   L ++G I  N
Sbjct: 161 EYDTAFCDKRSKFVHYHPRTVVLNNLEFDHADIFSDLAAIETQFHHLVRTLPQSGLIVSN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EV 283
             ++  + + A+     ++       +  A +++       + +  E+ L G        
Sbjct: 221 AAEASLDRVLARGCWTPVER-----FNDPAGYRV-----TGDDARGELVLHGPEGVIGRT 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G H   N    L     +   +   + ALS F   +   +R          T+ D
Sbjct: 271 RWNLSGEHNRANACAALLAARHVGVSLAHGLDALSRFVNVK---RRMEVRGEVRGVTVYD 327

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLY 399
           + +  +P ++   ++ L      G  R +AVL      M  +G +            SL 
Sbjct: 328 D-FAHHPTAIATTVAGLR--RKVGNARILAVLEPRSNTMK-LGTMKSQLPD------SLR 377

Query: 400 NISHVWLS-GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +   +   G      ++AL P        E +D L   I  +   GD ++V  SN 
Sbjct: 378 EVDAAFCYAGNLGWDAREALAPMGERAIVEENLDRLVDQIVIAAQPGDHILVM-SNG 433


>gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 101

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           A   +V  ++  +    S+P   V D   AL +L    R
Sbjct: 59  AVGALVEREVQGA----SLPQLVVIDTRKALAQLGAMNR 93


>gi|171742515|ref|ZP_02918322.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
 gi|171278129|gb|EDT45790.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
          Length = 489

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 138/401 (34%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +       IPV    +V  A      A      A  I ITG+ GKT+T EM +  L
Sbjct: 78  RTPFILEAQRRGIPVMS--EVELAWQLRVNADSTGEPARWIGITGTNGKTSTTEMTSEML 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++   T   +G+    IG  ++ A +    D    EL    L      T  +    A IT
Sbjct: 136 TACGLTAPAVGN----IGKAVSHAAVDPANDVLCVELSSFQL----HFTDSLALDGAAIT 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI-Y 248
            IA  HL    GI+  A+ KA++F     +  +  N DD     L  ++  A G + I +
Sbjct: 188 NIADDHLDWHGGIDNYAADKAKVFH--RASKALVYNADDIRVTELAERAETAEGCRRIGF 245

Query: 249 SFGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLM 298
           +  K +     +                +  ++   +    H       +  H+  + L 
Sbjct: 246 TLHKPEAGQIGIVDGWIVDMSGVAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALT 305

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAA 356
            L +   L  D  TAI AL  F P   R +    A   + G    +D+S   N  + KA+
Sbjct: 306 ALALALGLGVDKGTAIAALQRFTPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKAS 365

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++  +        + +  +      G   +    D A  +         + G     + D
Sbjct: 366 LNSFAD-------KSVVWIAGGLAKGSRFERLVADQAHTIKAA-----VIIGEDQQPMLD 413

Query: 417 ALPRS---IHVHYSETMDG------LFLFIQSSLVDGDVVV 448
           A   S   I +   +  D             +    GDVV+
Sbjct: 414 AFKASAPQIPLTVIDPADKSTVMARAVNAAGAYAESGDVVL 454


>gi|46143515|ref|ZP_00135096.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 439

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 134/411 (32%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I  L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVKGITVYDD-FAHHPTAIAATIDALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LSGFHVLALKDALP 419
             E R +AVL    E    +     H  ++A  L+  N   V+      + V  + D L 
Sbjct: 337 GKEQRILAVL----EPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLT 392

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +     +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 393 Q--PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 439


>gi|126208913|ref|YP_001054138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae L20]
 gi|126097705|gb|ABN74533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 454

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 134/411 (32%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 67  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 127 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 184 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 244 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I  L     
Sbjct: 297 AGVSVAGACDALGSFINAN---RRLEVKGEVKGITVYDD-FAHHPTAIAATIDALRG-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LSGFHVLALKDALP 419
             E R +AVL    E    +     H  ++A  L+  N   V+      + V  + D L 
Sbjct: 352 GKEQRILAVL----EPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLT 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +     +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 408 Q--PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 454


>gi|225166182|ref|ZP_03727899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
 gi|224799576|gb|EEG18088.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
          Length = 437

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 114/351 (32%), Gaps = 53/351 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           + +++AITG+ GKTT  E LT AL  I +     G+  + +   +            + E
Sbjct: 97  RGSLVAITGTNGKTTLTEFLTHALRHIGRDVTATGNIGSPLSHLVAERGGGGPESIAVCE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +            + +R   A+ T  A  HL     IEE   AK  +FE           
Sbjct: 157 ISSFQ----AETLNHLRADSAIWTNFAEDHLERHPTIEEYFHAKWRLFERC--------- 203

Query: 227 YDDSFFELLKAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   +    +A     I+    G++   D ++    Q            G  +   
Sbjct: 204 --------IGGHVYAGTSVQIWADRLGQTLPTDARIPTEDQ-----------PGDILLRG 244

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-----GFF 339
                Y   +N L+                 A   F   + R ++            G  
Sbjct: 245 TPFADYPQRENFLLAAAWWHGQGLREGALYAAARTFTLADHRLQKIATTPGNAEPQLGSV 304

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S   N  +++AA++  +          I +LG   + G++  +F   +       
Sbjct: 305 TWWNDSKATNFHAVEAALNAFTA-------PVIVILGGKPKGGDI-PAFVRRI-----TP 351

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
            + H  L G     L  A   +   H +S T+D       +    G+ V++
Sbjct: 352 KVRHALLIGETGPVLAAAARDAGLAHTHSVTLDQAVTDAAALARPGEHVLL 402


>gi|158316852|ref|YP_001509360.1| UDP-N-acetylmuramate--alanine ligase [Frankia sp. EAN1pec]
 gi|158112257|gb|ABW14454.1| UDP-N-acetylmuramate--alanine ligase [Frankia sp. EAN1pec]
          Length = 549

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 120/361 (33%), Gaps = 40/361 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDF 162
           L +   ++A+ GS GKTTT  MLT+ L++      A IG+    +G      R     D 
Sbjct: 136 LTAPYRLVAVAGSHGKTTTAAMLTLVLAAGGADPTAVIGADVAQLGGSAVTGRG----DV 191

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E       E       + P +AVIT +   H   F     + +  A+    +   G 
Sbjct: 192 FVLEA-----DEYGGAFAGLDPELAVITNVEWEHPDLFPDEASVRAVFADFAARVRPGGR 246

Query: 223 IFLNYDDSFFELLKA---------KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWM 272
           + +  D      + A         +        +  +G +    ++   +       S  
Sbjct: 247 LVVCGDHPGVAAVLAELDRRAEPDRRADAPRARVVDYGFAPGRTWRAVDYVPLPGGGSTS 306

Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY- 330
            V   G  + E+     G H+A + L  L   + L      A++ L  +     R     
Sbjct: 307 TVLHDGNRVGELTLALPGPHIALDALAALATAAELGVPPTDALRTLGTYAGAARRFDVVG 366

Query: 331 RCALNQGFFTLIDESYNANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCE 380
           R +   G    I + Y  +P  +           A   V +   PH   R  A+L D   
Sbjct: 367 RASAPGGTRVEIVDDYAHHPTEIRATLRAARDRAAGRQVWAVAQPHTFSRLAALLDDFA- 425

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFI 437
                 +  + + +V +     ++   G H   L   + R   + +V + +    L   +
Sbjct: 426 -TAFGDADRVYVTDVYAARETDNL---GLHASDLAGRIRRPAAAGYVAWPDLPGRLVADL 481

Query: 438 Q 438
            
Sbjct: 482 A 482


>gi|256832304|ref|YP_003161031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685835|gb|ACV08728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
          Length = 502

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 133/408 (32%), Gaps = 53/408 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + + + +    ++PV+   ++  A             A  +A+TG+ GKTTT E+L   L
Sbjct: 83  HHEALTAAADHAVPVWS--EIELAWQLRVNNEHTNKPAPWLAVTGTNGKTTTVELLATIL 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     A +G+    +   +        +D  + EL    L      T+ + P  + I 
Sbjct: 141 HADGLRVATVGNVGAPVIRQI----QNPTIDVFVLELSSFQL----HFTYSMEPLASAIL 192

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            IA  H+      ++ AS KA IF        ++   DD    LL       G + I   
Sbjct: 193 NIAEDHVDWHGSFDQYASDKARIFTH-THRACVYSEGDDRVVRLLHEADVHPGARAISVS 251

Query: 251 GKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------------IGYHMAQ 294
            +S   +   +     C ++++ E     +                       +G H   
Sbjct: 252 AESPTPSSLGIVDGVLC-DRAFTEPLTGPQRYRHAAELAQLSDLAHLAGPDGVVGSHTIT 310

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG----FFTLIDESYNANP 350
           N L    +              +  F P   R +               T I++S   N 
Sbjct: 311 NTLFAAALARAYGVAPRAVRDGVKSFQPGRHRIEHVATVAKNDAPQSGVTFINDSKATNA 370

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            + +A++  L   S         ++G + + G    S   ++   L         + G  
Sbjct: 371 HAARASLLSLPLSSTVW------IVGGVTK-GANLDSLIAEIGPQLRSA-----VVIGVE 418

Query: 411 VLALKDALPRS-----IHVHYSETMDGLFLFIQSS----LVDGDVVVV 449
              +  A  R      +HV  ++   G+     ++       GDVV++
Sbjct: 419 HQEIVRAFARHAPHIPVHVASADDTGGVMRHAVNTAWKAAEPGDVVIL 466


>gi|62185436|ref|YP_220221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           abortus S26/3]
 gi|81174946|sp|Q5L521|MURD_CHLAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62148503|emb|CAH64274.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila abortus S26/3]
          Length = 420

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 124/380 (32%), Gaps = 66/380 (17%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V       IP+  V D+  A                + +TGS GKTTT   L   L 
Sbjct: 73  HPFVVEAKHRGIPI--VTDIQLAFQDPEFHRYPS-----LGVTGSAGKTTTVLFLVHLLR 125

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           S+  +   +G+    I       +        + E+    L E      +     A I  
Sbjct: 126 SVGMSACAMGNIGFPI------LQAMYQKGIRVVEISSFQLAEQEI--EIPVLSAAAILN 177

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I+  HL     ++    AK+ I + L+                      +L +    SFG
Sbjct: 178 ISENHLDYHYTLQAYTEAKSHIAKCLQS-------------------PESLWVGDGVSFG 218

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADV 310
           KS      L   ++      + + L   S       +  H   N      + + +T   +
Sbjct: 219 KS-----YLEATRE------INLVLDKGSA---LKPLYLHDRNNYCAGYALANEVTKIPL 264

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           ++ ++A+  F        R      +     I++S     +S++ A+  + +        
Sbjct: 265 ESFLQAVLTFDKPP---HRIEYLGEKDGVRYINDSKATTMSSVEKALIAVKE-------N 314

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSET 429
            I +LG     G    S    L  VL+   + HV   G     +  AL  S + +  ++ 
Sbjct: 315 IIVILG-----GRNKGSNFASLIPVLTQT-VKHVVAMGECRTEIAQALSSSNLPLTQAQD 368

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +       QS    GDV+++
Sbjct: 369 LQEAVHVAQSIAQPGDVILL 388


>gi|148651992|ref|YP_001279085.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           sp. PRwf-1]
 gi|148571076|gb|ABQ93135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter sp.
           PRwf-1]
          Length = 485

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 112/346 (32%), Gaps = 34/346 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A+       +   KA I+AITGS  K+T   ++              G+        L  
Sbjct: 110 AIVSDIQLFKEACKAPIVAITGSNAKSTVTTLVGQMAKDAGVNVGVGGNIGVPALSLLED 169

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +   +   + EL    L  +  L       +A +  ++P HL     +     AK  I
Sbjct: 170 EALGEAMQLAVLELSSFQLETVTNLGA----KVATVLNMSPDHLDRHGDMLGYHQAKHRI 225

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAK-----SHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           F+G +    + +N DD+    L A      S   G   +  +G     D ++   K   +
Sbjct: 226 FQGAQS---VVVNRDDALSRPLIADNTPRLSVGSGAPDLGEYGLITEGDGRIYLAKGTEK 282

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +               G H   N L  L +  +      + +          G   
Sbjct: 283 LLAAD----------QLKVKGKHNLVNALAALALGGLAGLPKQSML---KTLQEFSGLPH 329

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELS 385
           R +   N       ++S   N  S  AAI  L  +  +  G   + + +L      G+  
Sbjct: 330 RCQFVDNVAGVDYFNDSKGTNVGSTLAAILGLGSVYGNQSGAKTKLMLIL-----GGQGK 384

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
                +L  +++ Y +S + L G     ++  L ++      ET  
Sbjct: 385 GQQFGELVPLINKY-VSQILLIGQDAELIESHLQQANLSGDVETHQ 429


>gi|283456398|ref|YP_003360962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           dentium Bd1]
 gi|283103032|gb|ADB10138.1| murD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium dentium Bd1]
          Length = 480

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 138/401 (34%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +       IPV    +V  A      A      A  I ITG+ GKT+T EM +  L
Sbjct: 69  RTPFILEAQRRGIPVMS--EVELAWQLRVNADSTGEPARWIGITGTNGKTSTTEMTSEML 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++   T   +G+    IG  ++ A +    D    EL    L      T  +    A IT
Sbjct: 127 TACGLTAPAVGN----IGKAVSHAAVDPANDVLCVELSSFQL----HFTDSLALDGAAIT 178

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI-Y 248
            IA  HL    GI+  A+ KA++F     +  +  N DD     L  ++  A G + I +
Sbjct: 179 NIADDHLDWHGGIDNYAADKAKVFH--RASKALVYNADDIRVTELAERAETAEGCRRIGF 236

Query: 249 SFGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLM 298
           +  K +     +                +  ++   +    H       +  H+  + L 
Sbjct: 237 TLHKPEAGQIGIVDGWIVDMSGVAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALT 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAA 356
            L +   L  D  TAI AL  F P   R +    A   + G    +D+S   N  + KA+
Sbjct: 297 ALALALGLGVDKGTAIAALQRFTPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKAS 356

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++  +        + +  +      G   +    D A  +         + G     + D
Sbjct: 357 LNSFAD-------KSVVWIAGGLAKGSRFERLVADQAHTIKAA-----VIIGEDQQPMLD 404

Query: 417 ALPRS---IHVHYSETMDG------LFLFIQSSLVDGDVVV 448
           A   S   I +   +  D             +    GDVV+
Sbjct: 405 AFKASAPQIPLTVIDPADKSTVMARAVNAAGAYAESGDVVL 445


>gi|145641451|ref|ZP_01797029.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae R3021]
 gi|145273742|gb|EDK13610.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae 22.4-21]
          Length = 447

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 140/396 (35%), Gaps = 31/396 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVLA--LKDALPR 420
            G  R +AVL    E    +     H D  ++         V++     L+  + D   +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKD--DIAPALGRADEVFMLQPEQLSWEVADIANQ 403

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +   +++  +D L   I +     D ++V  SN  
Sbjct: 404 CVQPAYWNANLDRLVDMIVAEAQPTDHILVM-SNGS 438


>gi|312795114|ref|YP_004028036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166889|emb|CBW73892.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (EC 6.3.2.-) [Burkholderia rhizoxinica HKI 454]
          Length = 464

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 120/362 (33%), Gaps = 36/362 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT+T  ML   L          IG    + G+   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTSTASMLAWLLEDAGMNPGFLIGGVPLNFGISARLT----DSSFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I +    +   + +TG + +N
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDNLAAIETQFHHLVRTIPRTGRLVVN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             D   + + A+        +  FG               +++    V  + + + VV  
Sbjct: 221 GTDDALQRVLARG---CWSEVERFGVEGGWQVLPADEASPADE-RFAVYWRAQRVGVVNW 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  +     +      A  +L  F   +   +R     +    T+ D+ 
Sbjct: 277 SLQGEHNRMNALAAIAAAHNVGVPAVQAATSLGGFRNVK---RRMEVRGSIDGVTIYDD- 332

Query: 346 YNANPASMKAAISVLS-QISPHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYN 400
           +  +P+++   I+ L  +I      R +AVL      M  +G +            SL  
Sbjct: 333 FAHHPSAIGTTIAGLRTRIGDAPHARILAVLEPRSNTMK-LGTMKAQL------PASLAG 385

Query: 401 ISHVWLSGFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G                 P     H  + +  L   + ++   GD V+V  SN
Sbjct: 386 ADLVFGYGAPSGKDALGWDLGAALAPLGDKAHAFDDLGALVRAVAAAARAGDHVLVM-SN 444

Query: 454 SC 455
             
Sbjct: 445 GS 446


>gi|104779893|ref|YP_606391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas entomophila
           L48]
 gi|95108880|emb|CAK13576.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas entomophila L48]
          Length = 449

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 119/369 (32%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++       F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGGTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPSEGLVI--- 218

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
                E    +   +G  T + + G+      +L       + S  EV  +G++  VV  
Sbjct: 219 -HPTTEQALERVIGMGCWTPVQTTGEGGQWQARL----LSPDGSRFEVLFEGEAQGVVDW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I+ LS F   +   +R          T+ D+ 
Sbjct: 274 ALTGQHNVANALATLAAARHVGVAPAMGIEGLSAFKSVK---RRMEKVAEVQGVTIYDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      GE   IAV+    E    S     H D     S+ +   
Sbjct: 330 FAHHPTAIATTLDGLR--KRVGEAPVIAVI----EPRSNSMKLGAHRD-GLPESVNDADQ 382

Query: 404 VWLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V               A    +    +++++ +   ++     G  VV+  SN  GF   
Sbjct: 383 VIWYAPPNLGWDLAGTAAQCKVPSVVADSLEAIIDRVKGQARPGTHVVIM-SNG-GFGGL 440

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 441 HGKLAEALK 449


>gi|256786062|ref|ZP_05524493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           lividans TK24]
 gi|289769958|ref|ZP_06529336.1| predicted protein [Streptomyces lividans TK24]
 gi|289700157|gb|EFD67586.1| predicted protein [Streptomyces lividans TK24]
          Length = 120

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLG+M E+G+ S   H ++  + S Y +  V   G  +         +  V   
Sbjct: 13  GGRRIAVLGEMLELGDESVEAHREVGRMASEYGVDLVVAVGGDLAKQLALAAGAAGVPDI 72

Query: 428 ETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +        ++ S L   DVV+VK+S     +++   L
Sbjct: 73  ALVGDNITAAAYLDSILRPDDVVLVKASRGGQLWQIAQAL 112


>gi|86740123|ref|YP_480523.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia sp. CcI3]
 gi|109892704|sp|Q2JD48|MURC_FRASC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86566985|gb|ABD10794.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia sp. CcI3]
          Length = 502

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 118/404 (29%), Gaps = 46/404 (11%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P       LG   +          A   ++A+ GS GK+TT  MLT+ L +         
Sbjct: 86  PEIVAARALGLPVRRRSEWLPELTAGYRLVAVAGSHGKSTTSAMLTLVLRAAG------- 138

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
             +    +   ++++  +   G  ++ +    E       + P IAVIT +   H   F 
Sbjct: 139 -LDPTAVIGAEVSQLGGNALAGSGDVFVLESDEYGGAFAGLDPSIAVITNVEWEHPDVFP 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDS--------FFELLKAKSHALGIKTIYSFGKS 253
               + +A A     +   G + +  D                    A+    +  +G  
Sbjct: 198 DEASVRTAFAAFARRVRPGGRLVVCGDHPGVVAVLTELGRQRPGNDVAVNDVAVIDYGFG 257

Query: 254 KNADFQLRKW--KQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               ++          + +   V   G+ +  +     G H   N L  L   + L    
Sbjct: 258 AERHWRAVDVVTTAGDDMTRATVLRAGQEIGALTLTVPGRHSVLNALAVLATATELGVAP 317

Query: 311 DT----------AIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNANPASMKAAISV 359
                       A +         G           G  +L + + Y  +P  ++  ++ 
Sbjct: 318 AQTLTTLTTFTGAARRFEFVGFWNGPADSTGVGPAGGPGSLEVIDDYAHHPTEVRLTLAA 377

Query: 360 LSQISPHGEGRRIAVLGDMCE--------MGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
               +   +   +                    S +  + + ++ +      + L    +
Sbjct: 378 ARSRARGRQIWTVLQPHTFSRFAALLDDFAAAFSDADRVYVTDIYAARETDDLGLHAVDL 437

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +        + +V + E ++ L   ++ +L D       +S   
Sbjct: 438 VKRVSEPAATYYVSWPELVERLATDVRVTLSDE------ASRGI 475


>gi|306822428|ref|ZP_07455806.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|309802475|ref|ZP_07696581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553973|gb|EFM41882.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|308220875|gb|EFO77181.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 480

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 133/401 (33%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +       IPV    +V  A      A      A  I ITG+ GKT+T EM +  L
Sbjct: 69  RTPFILEAQRRGIPVMS--EVELAWQLRVNADSTGEPARWIGITGTNGKTSTTEMTSEML 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++   T   +G+    IG  ++ A +    D    EL    L      T  +    A IT
Sbjct: 127 TACGLTAPAVGN----IGKAVSHAAVDPANDVLCVELSSFQL----HFTDSLALDGAAIT 178

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            IA  HL    GI+  A+ KA++F     +  +  N DD     L  ++          F
Sbjct: 179 NIADDHLDWHGGIDNYAADKAKVFH--RASKALVYNADDIRVTELAERAETAEGCRRIGF 236

Query: 251 GKSKNADFQLRKWK------QCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLM 298
              +    Q+                  +  ++   +    H       +  H+  + L 
Sbjct: 237 TLHEPEAGQIGIVDGWIVDMSGVAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALT 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAA 356
            L +   L  D  TAI AL  F P   R +    A   + G    +D+S   N  + KA+
Sbjct: 297 ALALALGLGVDKGTAIAALQRFTPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKAS 356

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++  +        + +  +      G   +    D A  +         + G     + D
Sbjct: 357 LNSFAD-------KSVVWIAGGLAKGSRFERLVADQAHTIKAA-----VIIGEDQQPMLD 404

Query: 417 ALPRS---IHVHYSETMDG------LFLFIQSSLVDGDVVV 448
           A   S   I +   +  D             +    GDVV+
Sbjct: 405 AFKASAPQIPLTVIDPADKSTIMARAVNAAGAYAESGDVVL 445


>gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
 gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
          Length = 540

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 131/404 (32%), Gaps = 47/404 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              IS D+R +      F  KG  +    ++  A Q G    V   D      ++     
Sbjct: 57  FTRISYDTRQVDDHTLLFC-KG-RFHS-SYLDKADQDGLPCYVAENDYSQVTRAIG---I 110

Query: 87  GVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSS-IKKTYACIGSY 143
            V D+  A++ L+ A       + T+I ITG+ GKTTT       L++      A + S 
Sbjct: 111 IVTDIKKAMSLLSSAFYRYPAKEITVIGITGTKGKTTTAYFTHAILNAYTGGKAALLSSV 170

Query: 144 NNHIGVP------------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186
           +N +               L L RM          + I E+        R   + +   +
Sbjct: 171 DNCLDGHTFVESDLTTPESLDLFRMMRQAVSQGMKYLIMEVSSQAYKVDR--VYGLTFAL 228

Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                I+P H+S       E+    K +I      +  + LN D     L+   +   GI
Sbjct: 229 GAFLNISPDHISPIEHPSFEDYFYCKRQIALN---SSALVLNADMVHSSLVTQDAGLRGI 285

Query: 245 KTIYSFGK-----SKNADFQLRKWKQC-SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
             + +F        + AD  +   ++   E    + +L+GK +        G     N  
Sbjct: 286 -PVTTFRLENSNADRTADLTVTSIREDKGESPQFQARLKGKDLGRFSLSIPGDFNGANAA 344

Query: 298 MTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             L ++S    D+      +AL         G+    +        I + Y  N  S   
Sbjct: 345 AALALISACGLDLTNPHVQQALQAMEKVTIAGRMEIFSSPDKSLVGIVD-YAHNGVSASV 403

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +  + Q       R I V G     G  +     ++ E     
Sbjct: 404 LLDYIDQAYGRLNPRIILVTGS---AGNKAYDRRQEIVEAAQNR 444


>gi|307250719|ref|ZP_07532654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857257|gb|EFM89378.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 439

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 135/411 (32%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSSGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I   G+ K    Q       ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I---GEDK----QWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I  L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATIDALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LSGFHVLALKDALP 419
             E R +AVL    E    +     H  ++A  L+  N   V+      + V  + D L 
Sbjct: 337 GKEQRILAVL----EPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLT 392

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +     +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 393 Q--PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 439


>gi|188578475|ref|YP_001915404.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522927|gb|ACD60872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 455

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 127/373 (34%), Gaps = 40/373 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLA 154
               +A ++      +A+ G+ GKTTT  +L+  L +  +     IG      GV   L 
Sbjct: 95  GAQWLAEQVLPGRDTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVAADFGVSARLG 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +        + E            +  V  RP +A++  +   H   F  +  I      
Sbjct: 155 QG----REFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHH 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +   G + +N +D+    + A      ++    FG   + D+  R     ++ S  
Sbjct: 211 LVRTVPARGRLIVNGEDAHLAEVLAMGCWTSVEQ---FGFDASLDWSARLI--AADGSAF 265

Query: 273 EVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            V  +G  +  V    +G H   N L  L  V  +  D  T + AL+ F   +   +R  
Sbjct: 266 AVLHRGAEVGHVQWLLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVK---RRLE 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELS 385
              +    T+ D+ +  +P ++    + L  +       R+ V   M        +G  +
Sbjct: 323 VIGSARGITVYDD-FAHHPTAIA---TTLQGLRARVGAARVVV--AMEPRSNSMRLGAHA 376

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL 441
           Q+         SL++   V           DA P           ++ +  L   +    
Sbjct: 377 QAL------APSLHDADAVVFL-HRPELAWDAAPIIAQVRGEARVAQDVAILLRTLGEIA 429

Query: 442 VDGDVVVVKSSNS 454
             GD VV   SN 
Sbjct: 430 QPGDHVVFM-SNG 441


>gi|145635327|ref|ZP_01791030.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittAA]
 gi|148825604|ref|YP_001290357.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittEE]
 gi|229847244|ref|ZP_04467347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 7P49H1]
 gi|145267471|gb|EDK07472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittAA]
 gi|148715764|gb|ABQ97974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittEE]
 gi|229809787|gb|EEP45510.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 7P49H1]
          Length = 453

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 147/412 (35%), Gaps = 36/412 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L   P    + + E            +  +   P 
Sbjct: 125 ILEQNGLKPGFLIGGIAGNFGISARLGTSP----YFVIEADEYDTAFFDKRSKFIHYNPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 181 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 237 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 294 HTGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-K 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVL--ALKDALP 419
             G  R +AVL    E    +     H D  E+         V++     L   + D   
Sbjct: 349 VGGGVRILAVL----EPRSNTMKMGVHKD--EIAPALGRADSVFMLQPEQLPWEVADIAN 402

Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEE 467
           + +   +++  +D L   I +     D ++V    S       ++++ L ++
Sbjct: 403 QCVQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLKQK 453


>gi|291534965|emb|CBL08077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 401

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 102/344 (29%), Gaps = 58/344 (16%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV 160
              + +  +I ITG+ GK+TT  ML   L +   +    +G+        L       + 
Sbjct: 81  FLQQFRDQVIGITGTKGKSTTSAMLYTVLKACSSRPVLLLGNIGQP---CLDYFEEVTED 137

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              ++E+    L         V PHIA+   +   HL  +  +E+   AK+ I    +  
Sbjct: 138 TIIVYEMSCHQLAH-----TNVSPHIAIFLNLYEEHLDYYGTVEKYFEAKSHIAAYQKSG 192

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              F+                                       Q   ++   V  Q K 
Sbjct: 193 DYFFV----------------------------------GENVPQIDTKAQRTVLHQPKG 218

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H   +      +  +L  + +  +K+++ F   EG   R +         
Sbjct: 219 VHYELKLAGEHNQYDAQFVERVAELLGCEKEAVLKSMADF---EGLPHRLQYVGTYRGVR 275

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             D+S +  P   +AAI+    I       +  ++G M             L   +  + 
Sbjct: 276 YYDDSISTIP---EAAINAAMSIPDA----KTVLIGGMDRGINYDL-----LVAFIREHK 323

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                 +      +   +    +  Y+E ++            G
Sbjct: 324 EFQFICAYASGKRIFGEVGDCENCVYAEDLEQAVEAAVQMTEPG 367


>gi|258510191|ref|YP_003183625.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476917|gb|ACV57236.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 881

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 130/386 (33%), Gaps = 55/386 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------------GV 149
           A    +  I++ITG+ GKTTT  ++    +   K      +   +I             +
Sbjct: 474 AGSDGRIPIVSITGTNGKTTTARLVAHGFALAGKAVGLTTTGGVYIGGECVCRGDTTGPM 533

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIA 207
              L      V+  + E   +  G +R         + VIT ++  H        I++IA
Sbjct: 534 SARLVLSNPRVEVAVLE--TARGGIVRGGLAYDVADVGVITNLSLDHVGQDGLETIDDIA 591

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI------------KTIYSFGKSKN 255
             KA + E +   G + LN DD     L  +  A  +            + + + G +  
Sbjct: 592 FVKALVGECVRDDGAVVLNADDPRVLALAPRFRAPLVLVSQVPENPHVARHVQAGGTAVV 651

Query: 256 A-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           A D  L +W+  +++  + V      + +   G+     +N  +    +        T  
Sbjct: 652 ASDGVLYEWQGGAQRPIIGVA----QIPICLGGLARFHVENAALAAAAMRAAGLPRSTVA 707

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           KAL+ F P++  G+     L  G   ++D  Y  NPA  +     L  +      RR+ V
Sbjct: 708 KALATFLPEQNTGRLEMYVLPNGARVVLD--YGHNPAGFREVGRWLQALP---CRRRVGV 762

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVW----------LSGFHVLALKDALPRSI-- 422
           +G     G+ +     +    L+ +                  G     L  ++ R+   
Sbjct: 763 VGVP---GDRANHVVEEAGRALAPW-FDEFIVKEDADLRGRTPGEVARLLSSSIARACPD 818

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVV 447
             V          L     L   DVV
Sbjct: 819 KKVEVILDEREAALIAVRGLGPEDVV 844


>gi|320105953|ref|YP_004181543.1| UDP-N-acetylmuramate [Terriglobus saanensis SP1PR4]
 gi|319924474|gb|ADV81549.1| UDP-N-acetylmuramate [Terriglobus saanensis SP1PR4]
          Length = 481

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 126/374 (33%), Gaps = 38/374 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPL 151
           +  L     L+ +  ++ + G+ GKTTT  ML       S      A             
Sbjct: 95  MAALIHDEFLQEREPLV-VCGTHGKTTTTSMLAWIYEVASRTMPELAASFLIGGVAENFG 153

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASA 209
           T   + ++    I E               +   P  A++T +   H   ++ +E + +A
Sbjct: 154 TSFLVRLETKPFILEGDEYDTAFFDKGPKFLHYFPDAAILTHVEYDHADIYADLEAVKTA 213

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
              +   + + G I      +      A++       +  +G   ++ +Q++ +K  +  
Sbjct: 214 FKRLVNLVPRRGRIVAFDGSANVTECVARAFCA----VERYGFEPSSYWQMKDFKGGAST 269

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            W  ++      ++     G H A N      + +         ++AL+ F   +   +R
Sbjct: 270 KWTLLREGKHFADLELPMAGEHNALNATAAAAMAAGQGVPAVAIVEALASFRSVK---RR 326

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                     T+ID+ +  +P +++  +  L    P  + R IAVL         S +  
Sbjct: 327 LEVRAEVNGITIIDD-FAHHPTAIRETLRALRSAYP--DRRLIAVLE------PRSNTLR 377

Query: 390 IDL--AEVL-SLYNISHVWLSG-------------FHVLALKDALPRSIHVHYSETMDGL 433
            ++  A+++ SL   + V L+                   +       I        D +
Sbjct: 378 RNVFEADLIDSLSGANEVALASVFKSEAIPTTERLEPQRVVAGLTQIGIPAQLYSDADAI 437

Query: 434 FLFIQSSLVDGDVV 447
              +   L+ GDVV
Sbjct: 438 VTGLTPRLLPGDVV 451


>gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 493

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 114/368 (30%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT  ML   L +     A +G+    +   +  
Sbjct: 120 GDVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIGVSLLDAV-- 177

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D    EL    L         +R H   +  +AP HL     +   A+ K  I
Sbjct: 178 -LGDETYDVLAVELSSYQL----HWAPSLRAHSGAVLNLAPDHLDWHGSMAGYAADKGRI 232

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +EG   +     N  D+  E L  ++    G + I ++ G    +   L           
Sbjct: 233 YEG--NSVACVYNAQDAATEDLVREADVEEGCRAIGFTLGTPGPSQLGLVDGILVDRAFV 290

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            + Q Q + +  V        H   N L    +              L  F        R
Sbjct: 291 ADRQKQAQELAEVGDVDPPAPHNIANALAAAALARAFGVPPAAVRDGLRAF---RPDAHR 347

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +    T ID+S   N  + +A+++             I  +      G       
Sbjct: 348 IEHVADVAGVTYIDDSKATNTHAAEASLAAYEP---------IVWIAGGLAKGATFDGLV 398

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSL 441
              A+ L       V L G     +K+AL R         +D           L      
Sbjct: 399 TGAAKRLR-----GVVLMGADRALIKEALTRHAPEVPVVDLDRTDTGAMPAAVLEAARLA 453

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 454 RPGDTVLL 461


>gi|218290680|ref|ZP_03494771.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239345|gb|EED06543.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 881

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 126/385 (32%), Gaps = 55/385 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------------GV 149
           A    +  I++ITG+ GKTTT  ++    +   KT     +   +I             +
Sbjct: 474 AGSDGRIPIVSITGTNGKTTTARLVAHGFAVAGKTVGLTTTGGVYIGGECVCRGDTTGPM 533

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIA 207
              L      V+  + E   +  G +R         + VIT ++  H        I++IA
Sbjct: 534 SARLVLSHPRVEVAVLE--TARGGIVRGGLAYDVADVGVITNLSLDHVGQDGLDSIDDIA 591

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             KA + E +   G + LN DD     L  +  A     +    +  N     R  +   
Sbjct: 592 FVKALVGECVRDDGAVVLNADDPRVLALAPRFRA----PLVLVSQVPNNPHVARHVQAGG 647

Query: 268 EQSW----MEVQLQGKS---------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                   +  + QG +         + +   G+     +N  +    +        T  
Sbjct: 648 TAVVASDGVLYEWQGGAQRPIIGVAQIPICLGGLARFHVENAALAAAAMRAAGLPRSTVA 707

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           KAL+ F P++  G+     L  G   ++D  Y  NPA  +     L  ++     RR+ V
Sbjct: 708 KALATFLPEQNTGRLEMYVLPNGARVVLD--YGHNPAGFREVGRWLQALA---CRRRVGV 762

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPRSI-- 422
           +G     G+ +     +    L+ +      +           G     L  ++ R+   
Sbjct: 763 VGVP---GDRADHVVEEAGRALAPW-FDEFIVKEDADLRGRAPGEIARLLSSSIARTCPD 818

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDV 446
             V          LF    L   DV
Sbjct: 819 KKVEVILDEREAALFAVRGLGAEDV 843


>gi|213969319|ref|ZP_03397457.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato T1]
 gi|213925997|gb|EEB59554.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato T1]
          Length = 479

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++       F + E   
Sbjct: 135 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGGTPFFVVEADE 191

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 192 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +     +        ++T       +   +Q R      + S  EV  +G+    V  G
Sbjct: 252 TEPALSRVIKMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLFEGELQGAVEWG 304

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           + G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 305 MTGLHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 361 AHHPTAIATTLDGLR--KKVGDAPIIAVI----EPRSNSMKLGAHRD-GLPESVQQADQV 413

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A   A   ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 414 VWYAPPNLGWDLAATVAA--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GFGG 469

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 470 LHGKLAEALQ 479


>gi|134280196|ref|ZP_01766907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 305]
 gi|134248203|gb|EBA48286.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 305]
          Length = 504

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 145/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 95  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 151

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 152 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 207

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 208 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 264

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 265 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 324

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +           +          G   R            +D+S   N
Sbjct: 325 LHNAANALAAYALARASGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLAEHATLEAAVRAASTLAQPGDAVLL 469


>gi|254468824|ref|ZP_05082230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [beta proteobacterium KB13]
 gi|207087634|gb|EDZ64917.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [beta proteobacterium KB13]
          Length = 451

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 126/389 (32%), Gaps = 35/389 (8%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIG 148
           ++        +   L     +IA++G+ GKTTT  M+   L          IG    +  
Sbjct: 85  NLRYQSGPQWLYENLLHDKWVIAVSGTHGKTTTTSMINWILRENDIDCGYLIGGITGNFS 144

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
              +L     D  F + E            +  +  RP   VI  I   H   F  I  I
Sbjct: 145 SSSSL--SQSDSPFFVIEADEYDTAFFDKRSKFIHYRPKTLVINNIEFDHADIFDDISHI 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 +   + + G I +N  D   +             I+S  +  N+       +  
Sbjct: 203 KRHFHHLIRTVPQQGKIIINQQDKNTKETVDMG-------IWSEIEEFNSSESWHIEQIN 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E+ +   + +   +      IG H   N +  +     +    + A+K+LS F   +  
Sbjct: 256 KEKLFFYKEKKIGKLNWDL--IGEHNELNAMAAILAARHVGVSEENALKSLSSFKNTK-- 311

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMG 382
            +R      +   T+ D+ +  +P ++          +   + + + V+      M   G
Sbjct: 312 -RRLEVIYKKNNLTIYDD-FAHHPTAIHFIAKTFC--NNFPKDKTLFVIDPRSNTMKR-G 366

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +L +        +L       ++         K        +  +E +      +++ + 
Sbjct: 367 DLKEELRS----ILRNIPAFMLFSKDLLWEPAKYLADLDTKIFIAEDLAAFIEKLKNIIF 422

Query: 443 DGDVVVVKSSNSCGFY----RLINLLLEE 467
           D D +V   SN   F     ++I+ L  E
Sbjct: 423 DYDHIVFL-SNGS-FEGVQSKIISFLENE 449


>gi|30248927|ref|NP_840997.1| cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
 gi|30138544|emb|CAD84834.1| Cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 856

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 130/401 (32%), Gaps = 61/401 (15%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+     A    ++  +IA+TG+ GKTTT  ++   L + +       +    +     
Sbjct: 454 EAIIDHLFAPGENARIPVIAVTGTNGKTTTVRLIANMLENNRLRVGIACTDGVFVNGQCV 513

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                             +VD  + E   +  G +R         +AV+T I    HL  
Sbjct: 514 DTGDCSGPQSARNILFHPEVDAAVLE--TARGGILREGLGFDYCDVAVVTNIGRGDHLGL 571

Query: 199 -NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
            N +  EE+A+ K  I E +  KTG   LN DD     + +         +  F ++   
Sbjct: 572 ANINTAEELAAVKRTIVENVNPKTGVAVLNADDPLVLGMASHCPG----NVTFFSRNHRH 627

Query: 257 DFQLR--------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              L                       +   + L    + +  +G+      N + ++G 
Sbjct: 628 PVILEQRVQGKRVIYMEDHHIIVAEAGTERRISLS--QIRLTKNGMISFQIDNAMASIGA 685

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D  T    L+ F              N    TLI + Y  NP +M+A +  +  
Sbjct: 686 GLAIELDWTTICAGLADFVSDAQTVPGRFNLFNYREATLIAD-YGHNPDAMEALVCAIDH 744

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLS----------GFHV 411
           I      +R  V+    +            L +V        V L           G  +
Sbjct: 745 IPAK---KRTVVISAAGDRRNEDIRLQTRILGDV-----FDEVVLFQDKCQRGRADGEVL 796

Query: 412 LALKDALPRSIHVHYSETMDGLFLFI---QSSLVDGDVVVV 449
             L++ L  +  V     + G F  I    ++L  G++ ++
Sbjct: 797 GLLREGLENAKRVRKVSEIRGEFKAIDTALTNLEAGELCLI 837


>gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
          Length = 434

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/372 (15%), Positives = 116/372 (31%), Gaps = 56/372 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----------NHIGVPLTLARM 156
              +I +TG+ GKTTT  ++   L  +  + A  G+             H+  P  L  +
Sbjct: 59  DMKVIGVTGTNGKTTTTALIYSLLIDLGYSAALQGTRGLFVDDRPIEEKHMTTPSILETL 118

Query: 157 -------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                      ++ + E+    + + R     +   + V T +   HL     +EE    
Sbjct: 119 WNMKRAKEAGAEYFVMEVSSHAIDQDRI--EGLDFALKVHTNVTRDHLDYHGTLEEYRRV 176

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+  F          LN D+        KS     K  Y++G  + A F++  +      
Sbjct: 177 KSLFFS---DDSLKLLNKDE-------IKSITFNPKNAYTYGVEEPATFKVLAYSLQ-NG 225

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGK 328
               VQ + +      + +G     N+L  +  V +LT   +      +  F    GR +
Sbjct: 226 ISAVVQFRQEQEAFFSNMMGLFNLYNLLAAIASVKLLTDRPLAEICDVVENFGGVSGRME 285

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                      T+I + +      M   +  L           + V G     G+  +  
Sbjct: 286 VVSAKP-----TIIVD-FAHTDDGMYRVLDSLKDKD------LVVVFGA---GGDRDRGK 330

Query: 389 HIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQS 439
              +  V   +    ++++  +         +  +   L     V               
Sbjct: 331 RPRMGAVAGRF-AKKIYVTSDNPRSEDPEAIIAEILQGLKGKEGVRAIVDRREAIERAID 389

Query: 440 SLVDGDVVVVKS 451
            L + +++++  
Sbjct: 390 ELQEDEILLILG 401


>gi|227822653|ref|YP_002826625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           fredii NGR234]
 gi|227341654|gb|ACP25872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium
           fredii NGR234]
          Length = 463

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 19/242 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L S  +     G+    +         P    F + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILKSSGRDTQLGGNIGRAVL----TLDPPKAGRFFVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +GT  +
Sbjct: 168 ECSSYQID----LAPTLDPTAGILLNLTPDHLDRHGTMQHYADIKERLVAG---SGTAVV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ-CSEQSWMEVQLQGKSMEV 283
             DDSF  L+  +    G K +    +   AD           +E    E+      ++ 
Sbjct: 221 GVDDSFSSLIAERVERAGTKVVRISRRHGLADGIYAEGSSLMRAENGTAELFADLGGIQT 280

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H AQN    +     +  D    +  L  F    G   R +    +     ++
Sbjct: 281 LR---GGHNAQNAAAAVAACLTVGVDRQDIVHGLKTF---PGLKHRMQPIAKRDDIVFVN 334

Query: 344 ES 345
           +S
Sbjct: 335 DS 336


>gi|58581059|ref|YP_200075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84622977|ref|YP_450349.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|188577965|ref|YP_001914894.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|62900658|sp|Q5H2Y1|MURD_XANOR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595704|sp|Q2P5V2|MURD_XANOM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58425653|gb|AAW74690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366917|dbj|BAE68075.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188522417|gb|ACD60362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 468

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 106/328 (32%), Gaps = 34/328 (10%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L       A +G+    +   L     P    +   EL     G++       RP
Sbjct: 132 LLAHLLRVAGHRTALVGNIGQPLLEVLAPQPPPA---YWAIELSSYQTGDVGR--SGARP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+  + P HL            K  +         + LN  D     L+     L  
Sbjct: 187 ELAVVLNLFPEHLDWHGDEARYVRDKLSLVTEGRPR-IVLLNAADPLLASLQ-----LPD 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  F   +    +        EQ+  +               G H  +N+   L  + 
Sbjct: 241 SEVLWFNHPEGWHLRG-DVVYRGEQAIFD--------SADVPLPGVHNRRNLCAVLAALE 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D +    A   F P      R +   +    + +++S +  P +  AA++  +Q  
Sbjct: 292 ALGLDAEALAPAALSFRPLP---NRLQVLGSVDGISYVNDSISTTPYASLAALACFAQ-- 346

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RR+A+L    + G     F   +A+      I  +  +G  + AL   L  +   
Sbjct: 347 -----RRVALLVGGHDRGLDWHDFARHMAQQA-PLEIVTMAANGPRIHALLAPLADAGRF 400

Query: 425 --HYSETMDGLFLFIQSSL-VDGDVVVV 449
             H +  ++      + +L   G VV++
Sbjct: 401 GLHAANDLEHAMQLARDALGGQGGVVLL 428


>gi|325981161|ref|YP_004293563.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
 gi|325530680|gb|ADZ25401.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
          Length = 857

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 132/398 (33%), Gaps = 55/398 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----- 147
            A+          ++  +IA+TG+ GKTTT +++   L    +      +    I     
Sbjct: 455 KAIIDYMFTPGEDARIPVIAVTGTNGKTTTTQLIASILEQSNQRTGVACTNGVFIAGQCI 514

Query: 148 -----GVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                  P +   +    DVD  + E   +  G +R         +AV+T I    HL  
Sbjct: 515 DTGDCSGPKSARNILSHPDVDAAVLE--TARGGLLREGLGFDHCDVAVVTNIGMGDHLGM 572

Query: 199 -NFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
              + +EE++  K  I + ++ +TG   LN  D     +          ++  F  + + 
Sbjct: 573 AYVNTVEELSLVKRVIVQNVKSETGFAVLNAADPLVASMAEYCPG----SVIFFAHNSHH 628

Query: 257 DFQLRKWKQCSEQSWM------------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               R   Q     ++            E ++    + +  +G      +N+L  +G   
Sbjct: 629 PVLARHHAQHKRVVYVENDYIVAVSDCSEYRIPLNEIPLTKNGTIRFQIENVLAAVGAGW 688

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L          ++ F              N    TLI + Y  NP +++A +S +  I 
Sbjct: 689 ALGIGWSDICAGVTNFVNNTQTAPGRFNLFNYRNATLIAD-YGHNPDAIQALVSAIENIP 747

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
                  I+  GD     E  +     L +         V L           G  +  L
Sbjct: 748 SRKRSVVISAAGD--RRDEDIRQQTRILGD-----AFDEVVLYQDKCQRGRADGEVLSLL 800

Query: 415 KDALPRSIHVHYSETM--DGL-FLFIQSSLVDGDVVVV 449
           ++ L  +        +  + +      S+L DGD+ ++
Sbjct: 801 REGLENARRTQKIREIIGEAIAIDAALSNLQDGDLCLI 838


>gi|227824226|ref|ZP_03989058.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904725|gb|EEH90643.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 429

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 130/405 (32%), Gaps = 81/405 (20%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------------------- 139
               K   I ITG+ GK +    L+  L++  K  AC                       
Sbjct: 34  HPERKIRTIHITGTNGKGSVASYLSHILTASGKKTACYTSPHFVKYNERMSIDGVDISDE 93

Query: 140 ----------------IGSYNNHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRF 177
                           + +          +  M         VD+ + E+GM  L +   
Sbjct: 94  DFAAVTEETKAAVDTFLKNGGEQPTQFEVITAMAFLYFAKEKVDYAVIEVGMGGLWD--- 150

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            T+++ P ++VIT +   H       IE IA  KA I +       +    D S  E+++
Sbjct: 151 STNVIVPELSVITNVTLEHTDRLGKTIEAIAEQKAGIIKDHVP---VVTAADGSALEVIR 207

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S       +Y +G+    DF         ++            EV  H  G H   N 
Sbjct: 208 VTSEEKSA-PLYVYGE----DFSATLLAGSMQEQLFLYPFHSGEREVTIHLAGAHQIVNA 262

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            + L    +L A  D AI    +    +      R  L      +I +    NP+ +   
Sbjct: 263 AVALKAAEVL-AKKDPAITEKKILKGMDLTTWPGRMELIHERPDVILDG-AHNPSGVTVL 320

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLS----GFH 410
              L    PH  G R  + G M +          D++EV  +   +   ++      G  
Sbjct: 321 RRALDTYYPH--GHRYFIFGMMGD---------KDVSEVAQILFRDTDTIYTVLADNGTR 369

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKSS 452
                D L R +H      MD L    ++++      DVV+V  S
Sbjct: 370 AEK-PDVLARRLHKKAIP-MDDLKTAFETAVHEAGPDDVVLVCGS 412


>gi|291569849|dbj|BAI92121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrospira
           platensis NIES-39]
          Length = 454

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 47/384 (12%)

Query: 80  SLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--- 134
              +P       LG   + ++ +A R       + ITG+ GKTTT  ++           
Sbjct: 74  PWDLPALETARSLGIETIGEMELAWRNLQDIPWVGITGTNGKTTTTALIAKIFEVAGSAA 133

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                IG+    + +          +D+ I E+    +      +  + P I + TT  P
Sbjct: 134 PACGNIGNAACELALQQQQNSSTP-LDWVIAEISSFQI----ESSSTLAPKIGIWTTFTP 188

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL+    ++     K  +   +E++     N DD++       +  L  + +++     
Sbjct: 189 DHLNRHYTLDNYFRIKGRL---MERSQVQVFNGDDAYLRR---AAPELWPQAVWTSVNGA 242

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDT 312
                 R      +++W  V   G+++  V     +G H  QN+LM +    I   D + 
Sbjct: 243 EELLGDRVMGVYIQENW--VYQNGEAIAPVDSLKMVGDHNRQNLLMAVAAARIAGIDKEA 300

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              A+S+F        R            I++S   N  + +  ++ +       E   I
Sbjct: 301 IAHAISIFPGVP---HRLEEVSAWMGIRWINDSKATNYDAAQVGLAAV-------EPPVI 350

Query: 373 AVLGDMCEMGELSQ---SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYS 427
            + G   + G+ +    + H   A VL         L G    A  + L  +   +V   
Sbjct: 351 LIAGGEAKAGDDTDWINTIHQKAAAVL---------LIGSAASAFAERLQETHYQNVEIV 401

Query: 428 ETMDGLF---LFIQSSLVDGDVVV 448
           ET++        + S L    V++
Sbjct: 402 ETLENAIPRAAQLASVLQAKAVLL 425


>gi|241765720|ref|ZP_04763667.1| UDP-N-acetylmuramate [Acidovorax delafieldii 2AN]
 gi|241364407|gb|EER59525.1| UDP-N-acetylmuramate [Acidovorax delafieldii 2AN]
          Length = 481

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 124/388 (31%), Gaps = 57/388 (14%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL---A 154
            +A  +     ++A+ G+ GKTTT  ML   L          IG    + GV   L   A
Sbjct: 90  WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWILEQAGLKPGFLIGGVPLNFGVSARLGTGA 149

Query: 155 RMPVD-------------------------VDFGIFELGMSHLGEIRFLTHLV--RPHIA 187
             P D                             + E            +  V  RP  A
Sbjct: 150 TAPQDSTARTSAAQAPGGKPRSAAGGRSGSHPLFVIEADEYDTAFFDKRSKFVHYRPRTA 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+  +   H   F  +  I      +   +  +G + +N      E L    H     ++
Sbjct: 210 VLNNLEFDHADIFDDLAAIERQFHHLVRTVPASGRVVVNG---LEESLARVLHMGCWSSV 266

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSIL 306
            SFG +      +  +    E    +V  QG+++  V     G H   N L  +     +
Sbjct: 267 SSFGAA------VSDFGAAGEPQAFDVLHQGRTVARVEWSLTGTHNQLNALAAIAAAHDV 320

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V+ +  AL+ F   +   +R          ++ D+ +  +P +++  +  L + S  
Sbjct: 321 GVPVEQSALALASFQNVK---RRMELRGTVRGISVYDD-FAHHPTALRTTLDGLRR-SLA 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVLALKDALPRSI- 422
              R +AV     E    +       +++   L   +++    +G    A     P  + 
Sbjct: 376 PGARILAVF----EPRSNTMKLGAMKSQLPWALEPADLAFCHTAGLDWDAAAALAPLGVG 431

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVV 447
                  +  +D L   +  +   GD +
Sbjct: 432 PGHRAQTAPDIDTLVSQVLLAAQPGDQI 459


>gi|319404512|emb|CBI78117.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 468

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 115/407 (28%), Gaps = 47/407 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +F+   +  G  L       V       +I + G  +  V      L            I
Sbjct: 65  EFVALILAPGVPLTYPRPHWVVEKARQENIEIIGDIELFVRARNLFLQQNGFDDQDVPFI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L   L  +       G+    I       +  V     + E     
Sbjct: 125 AITGTNGKSTTTALLAHLLEKMGYDVQMGGNIGTAIL----TLKPFVKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     L   ++P + ++  + P H+      E     K  +     +     ++ D   
Sbjct: 181 I----ELAPSLQPTVGLLLNLTPDHIDRHGSFERYVQVKERVVSRASR---ALISIDSLV 233

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHH 286
              L  K    G      +     +   + K     E + +     G+      +  +  
Sbjct: 234 CCALYQKLFDEG------YPIDPVSKEHVVKNGFYVEGTKLFAIYYGQHHMLADLANIAS 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A+N LM L  + IL                  G   R +     G    I++S 
Sbjct: 288 LRGSHNAENALMALATLQILKITTLDI---EEHLASYLGLAHRMQQVCKIGSILFINDSK 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A++  + I          V G   E G  +             Y I   +L
Sbjct: 345 ATNAEASVPALTTFNNIF-------WIVGGQAKEGGIDALKGF--------FYKIRKAYL 389

Query: 407 SGFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G            A P S+ +     +          +    VV+ 
Sbjct: 390 IGSTAENFARIIGSAFPFSMSLTLENAVREAASDAARDMEKEAVVLF 436


>gi|328462937|gb|EGF34759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 389

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 99/323 (30%), Gaps = 31/323 (9%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + L+     +A   + N  I V     +   D D  + EL    L  I+ L     P
Sbjct: 42  LIGLMLNQQWPHHA-FDAGNIGIPVSQVAQKAGKD-DTIVAELSSFQLCGIKTL----HP 95

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T I  AHL          +AK  I           +N+D      L  +S A   
Sbjct: 96  HIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQA--- 152

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  F + + A  +           W+                G H  +N L  +    
Sbjct: 153 -QIVPFSRKQAAGARASLID-----GWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAK 206

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D   + L  F   +    R +         + ++S   N  +   A++   Q  
Sbjct: 207 LKGVSDDAIREVLRTFSGVK---HRIQYLETINGRRVYNDSKATNVEAATVALNAFQQ-- 261

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  I  L    + G       +D    L   ++  + + G     +   L   +  
Sbjct: 262 ------PIVWLAGGLDRG-----LPMDALTPLVKKHVKSMVVFGQTAPLMAKLLKMPVSR 310

Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447
             +E +         +   GDV+
Sbjct: 311 FKTENVMTAVPLAYEASRPGDVI 333


>gi|160871689|ref|ZP_02061821.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
 gi|159120488|gb|EDP45826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
          Length = 452

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 136/395 (34%), Gaps = 27/395 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           ++      + G+  +      ++        +AA +     ++A++G+ GKTT   +L+ 
Sbjct: 64  LIIMGNSMTRGNPCVEYVLNQNIPYMSGPQWLAAHVLRNYHVLAVSGTHGKTTVSSLLSW 123

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L++        IG    +      L +     DF + E            +  +   P 
Sbjct: 124 ILAAAGLNPGFLIGGLAKNFDHSACLGKG----DFFVIEADEYDTAFFDKRSKFIHYHPK 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  ++ I    + +   +   G I     D   + + ++ +     
Sbjct: 180 TLILNNLEFDHADIFPNLDAIKMQFSYLLRTVPSQGLIICPQRDRNIQQVLSQGY---WT 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I   G  KN +         ++ S  E+  +  K  EV    IG H A N +  +    
Sbjct: 237 PIEYTGNEKNKEVIWHTALLKADASQFEIYYKNSKQGEVHWSLIGEHNAANAISAVAAAH 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +      AI AL+ F    G  +R          TL D+ +  +P ++ A    LS + 
Sbjct: 297 HVGIHPQKAIAALNQFQ---GIKRRLEIYKKINGITLYDD-FAHHPTAIAA---TLSGLR 349

Query: 365 PHGEGRRIAVLGDMCEMGELS--QSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPR- 420
                +R+ V   + E G  +   + H   L   L       +WL         + L   
Sbjct: 350 KKIGKKRLLV---ILECGTHTMRSNRHQKTLGPSLQE--ADKLWLLWPKQNRNNNILQNI 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           S+ +   +++D +   +       D +V+ S+   
Sbjct: 405 SVPLSLCDSVDEIVQEVIKVTQTSDHIVIMSNRGF 439


>gi|330443875|ref|YP_004376861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
 gi|328806985|gb|AEB41158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
          Length = 419

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 105/345 (30%), Gaps = 58/345 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +   I +TGS GKTTT   LT    ++  +   +G+    I        +       + 
Sbjct: 99  QQYPSIGVTGSNGKTTTVSFLTHLFHTLGLSAVSMGNIGTPI------LELQGVSGIRVV 152

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L +      +     A +  +   HL     ++    AK+ I   ++       
Sbjct: 153 EISSFQLVDQEE--RIPVFSSAALLNVCQNHLDYHDTMDAYMMAKSHIANYVQ------- 203

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D            L +    S GK   A F+  +       +               
Sbjct: 204 ---DP---------QTLWVGEGISLGKPYRAYFEETQEILDKASA--------------L 237

Query: 286 HGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             I  H   N      +   +    ++  + A+  F        R      +      ++
Sbjct: 238 KPIYLHDRSNYCAAYALAKEVCHVPLEGFLLAIQTFKKPP---HRIEYLGKKHNVHYYND 294

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S      ++K A+  L         + I +LG   + G+ S      L+ VLS     HV
Sbjct: 295 SKATTVEAVKQALIALGS-------KVIVILGGRNKGGDFSA-----LSFVLSQT-AKHV 341

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G     +  A+   + V  +  ++      Q+    GD +++
Sbjct: 342 IAMGECREEIVQAVAGVVPVCMAHKLEEAIEIAQALASAGDSILL 386


>gi|330881133|gb|EGH15282.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 439

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 117/366 (31%), Gaps = 34/366 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  ML   L          G     I     ++    
Sbjct: 94  WLADHVLQDRWVLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLG 150

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  F + E            +  V  RP  A++  +   H   F  +  I      +   
Sbjct: 151 DTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRT 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     +     +        ++T       +   +Q R      + S  EV  
Sbjct: 211 IPSEGLVIHPTTEPALSRVIEMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLF 263

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+    V     G H   N L TL     +       ++ALS F   +   +R      
Sbjct: 264 EGQLQGCVEWDMTGQHNVANALATLAAARHVGVVPSLGVQALSAFKSVK---RRMEKVAE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLA 393
               T+ D+ +  +P ++   +  L      G+   IAV+    E    S     H D  
Sbjct: 321 VRGITIYDD-FAHHPTAIATTLDGLR--KKIGDAPIIAVI----EPRSNSMKLGAHRD-G 372

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              S+     V        G+ + A       S+     ++++ +   + S    G  +V
Sbjct: 373 LPESVSQADQVVWYAPPNLGWDLAATVAG--GSVPSTVCDSLEAIIARVHSQAQPGTHIV 430

Query: 449 VKSSNS 454
           +  SN 
Sbjct: 431 IM-SNG 435


>gi|116670129|ref|YP_831062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter sp.
           FB24]
 gi|116610238|gb|ABK02962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter sp.
           FB24]
          Length = 528

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 109/350 (31%), Gaps = 35/350 (10%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +     IPV+G  +    L       + R  A  + ITG+ GKTTT  +    L +    
Sbjct: 115 AAARTHIPVWGDVE----LAWRVRERKGRKTADWLTITGTNGKTTTVGLTESMLQAAGLK 170

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+    I   L   R PV+ D    EL    L      +H V P  +V   +A  H
Sbjct: 171 AIAVGNVGTPI---LDALRDPVEYDVLAVELSSFQL----HWSHSVSPVASVCLNVAEDH 223

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +          + KA+++E  +K      N +    E +   +  +       F     A
Sbjct: 224 VDWHGSYASYLADKAKVYEHTQK--ACIYNAEQIETERMVENADVVEGCRAVGFTTLTPA 281

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSME-----VVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              L   +          + +  + E      +      HM  N L    +V    A+  
Sbjct: 282 ISMLGVVEGLLVDRAFIPERKDSAAELAAMADLGPVAPRHMVANALAAAALVRAYGAEPQ 341

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +             R +          I++S   NP +  A++S  +          
Sbjct: 342 AVRQG---LKTYIPGEHRIQLVARHNDVLWINDSKATNPHAAAASLSAFTN--------- 389

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +  +      G        + A  L       V L G    AL DAL R 
Sbjct: 390 VIWIAGGLSKGVSYDELVQEQAPRLKA-----VVLIGADTTALSDALKRH 434


>gi|257465567|ref|ZP_05629938.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus minor 202]
 gi|257451227|gb|EEV25270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus minor 202]
          Length = 454

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 105/301 (34%), Gaps = 28/301 (9%)

Query: 164 IFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E            +  V   P   +I  +   H   F  ++ I      +   +   G
Sbjct: 158 VIEADEYDSAFFDKRSKFVHYTPKTLIINNLEFDHADIFDDLKAIQRQFHHLVRTMPSQG 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KS 280
            I    DD   +          ++ I   G+ K   +  +     ++ S  EV   G K+
Sbjct: 218 CILSAADDQNVQDTLKMGSYSELQFI---GEGKA--WFAK--PLSADCSHFEVYHHGNKA 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            EV  + IG H   N LM +        +V  A +AL+ F       +R          T
Sbjct: 271 GEVKWNIIGSHNMHNALMAIAAAHHAGVEVAGACQALNRFINAN---RRLEIKGEVNGIT 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLS 397
           + D+ +  +P ++ A I+ L       + R +AVL    E    +     H  ++A  L+
Sbjct: 328 VYDD-FAHHPTAISATINALRG-KVGKDQRILAVL----EPRSNTMKMGVHKEEIAPSLT 381

Query: 398 LYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                 V+      ++V  + +AL +     +S  +D L   I       D ++V  SN 
Sbjct: 382 DAEAVFVYQPETIPWNVSVITEALSQ--PAKWSANIDELVEMIAEEAKPTDHILVM-SNG 438

Query: 455 C 455
            
Sbjct: 439 A 439


>gi|190573195|ref|YP_001971040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Stenotrophomonas maltophilia K279a]
 gi|190011117|emb|CAQ44726.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 469

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 127/370 (34%), Gaps = 34/370 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL     AA        + +TG+ GK+TT  ++   L +       +G+    +   L  
Sbjct: 101 ALWFAEHAADDGIVHDTVCVTGTKGKSTTTALVAHLLRAAGHRTGLVGNIGLPLLEVLDP 160

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              P   ++   EL     GE+       RP +AV+  + P HL      +     K  +
Sbjct: 161 QPAP---EYWAVELSSYQTGEVAR--SGARPQVAVVLNLFPEHLDWHGSEQRYIEDKLRL 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                      LN  D     L     +L    +  F + +    +        EQ+  +
Sbjct: 216 VTEAAPR-IAVLNATDPHLAAL-----SLPDSEVVWFNQLQGWHMRG-DIVHRGEQAVFD 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                          G H   N+   L  +  L  D      A+  F P   R +R   A
Sbjct: 269 --------TRNAPLPGRHNRGNLCAVLAALEALGLDAAALAPAVQDFRPLPNRLQRIGVA 320

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 T +++S +  P +  AA+   +       G+RIA+L    + G     F   +A
Sbjct: 321 ---DGLTYVNDSISTTPHASLAALECFA-------GQRIALLVGGHDRGLDWTDFMQHMA 370

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD-GDVVVVK 450
             +    I  +  +G  + A+   L  +     H +  +       +++L + G VV++ 
Sbjct: 371 HDVPPVEIVTMGSNGPRIHAMLQPLADAGRFGLHAAGDLAEAMALARTALGEQGGVVLLS 430

Query: 451 -SSNSCGFYR 459
             + S G YR
Sbjct: 431 PGAPSFGAYR 440


>gi|165976826|ref|YP_001652419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876927|gb|ABY69975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 454

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 133/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 67  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 127 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 184 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I   G+ K    Q       ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 244 I---GEDK----QWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 297 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 352 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ- 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 409 -PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 454


>gi|86150939|ref|ZP_01069155.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842109|gb|EAQ59355.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 431

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 128/341 (37%), Gaps = 40/341 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L      +      IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASL---VDDASVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              + L+      +N +D F +  K +S  L     Y     KN    +  +K     + 
Sbjct: 191 AYTQFLDTAKIRVINAEDEFLKNYKNESIKL-----YPSKDIKNCTMCIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  + +        D++T     +     +G  KR+ 
Sbjct: 243 FELKDWG---EFKVFGMGYHLALDASLAILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +      L+ +   +
Sbjct: 296 ILHADENLVLIDD-YGHHPTEIKATLSAAQEYAKLGRYKKITAIFEPHRYTRLATNL-KE 353

Query: 392 LAEVLSLYNISH-----VWLSGFHVLA--LKDALPRSIHVH 425
            A+      +       V+ +G   +   LK   P+++ V 
Sbjct: 354 FAKAFE--GVDELVILPVYAAGEEPIELDLKAVFPKALFVE 392


>gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 472

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 110/359 (30%), Gaps = 38/359 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +A+TG+ GKTTT +ML   L +     A +G+    +   +       + D 
Sbjct: 111 RRPDSAPWLAVTGTNGKTTTVQMLASILEAAGLRTAAVGNIGVSLLDAV---LGEEEYDV 167

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L         +R H AV+  +AP HL     ++  A+ K  I+EG      
Sbjct: 168 LAVELSSYQL----HWAPSLRAHSAVVLNLAPDHLDWHGSLQAYAADKGRIYEG--NRVA 221

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQL---QG 278
              N  D   E L  ++          F        QL   +    +++++E +    Q 
Sbjct: 222 CVYNVADKATEDLVREADVEEGCRAVGFTLGTPGPSQLGVVEGILVDRAFVEDRYRSAQE 281

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +     +    H   N L    +              L  F        R     +   
Sbjct: 282 LAEVSDVNPPAPHNVANALAAAALARAFGVPATAVRDGLRAFT---PDAHRIAHVADVDG 338

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +D+S   N  + +A+++             +  +      G          A+ L  
Sbjct: 339 VAYVDDSKATNTHAAEASLAAYEP---------VVWIAGGLAKGATFDELVAGAAKRLRG 389

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVV 449
                  L G     +++AL R         +D              +     GD V++
Sbjct: 390 A-----VLIGRDRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLL 443


>gi|5834372|gb|AAD53938.1|AF179611_22 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 269

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F + A     G+ +    + A      IP+ G  D+           R   +  ++ ITG
Sbjct: 72  FGISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRRCPVVGITG 129

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   L               +IG+PL  A    D    + EL    +   
Sbjct: 130 TNGKSTTTALIHHILKEAG----LPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID-- 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++
Sbjct: 184 --LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVI 241

Query: 236 KAKSHA 241
             +S A
Sbjct: 242 AKQSAA 247


>gi|28867957|ref|NP_790576.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28851193|gb|AAO54271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018876|gb|EGH98932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 449

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 121/370 (32%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +     +        ++T       +   +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIKMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLFEGELQGAVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGLHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVHGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDAPIIAVI----EPRSNSMKLGAHRD-GLPESVQQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALQ 449


>gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96
           + P + F A+ G + DG   I  A+++GA  V    +    +    +P+  V  +   L+
Sbjct: 1   MRPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPLIPVKGLAAQLS 60

Query: 97  KL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
            +             ++ +TG+ GKT+  +++  AL ++ +    +G+        L   
Sbjct: 61  AIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGSLQSG 120

Query: 155 RMPV 158
           R   
Sbjct: 121 RHTT 124


>gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 110/368 (29%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT +ML   L++     A +G+    +   + L
Sbjct: 102 GDVELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVGNIGVSLLDAV-L 160

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              P DV     EL    L         +R H A +  +AP HL     +E  A+ K  I
Sbjct: 161 GEEPYDV--LAVELSSYQL----HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRI 214

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           +EG         N  D   E L  ++          F     A  QL   +         
Sbjct: 215 YEG--NRVACVYNVADKATEDLVREADVEEGCRAIGFTLGTPAPSQLGIVEGILVDRAFV 272

Query: 274 VQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              Q  + E            H   N L    +              L  F        R
Sbjct: 273 ENRQKNAQELAEVADVDPPAPHNIANALAAAALARAFGVPAQAVRDGLRAFT---PDAHR 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +      +D+S   N  + +A+++             I  +      G       
Sbjct: 330 IAHVADVDGVAYVDDSKATNTHAAEASLAAYES---------IVWIAGGLAKGATFDELV 380

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSL 441
              A  L         L G     +++AL R         +D              +   
Sbjct: 381 AKSAPRLRGA-----VLIGADRELIREALARHAPEVPVVDLDRTDTGAMRAAVQEARRLA 435

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 436 RTGDTVLL 443


>gi|255525853|ref|ZP_05392782.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
 gi|255510496|gb|EET86807.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
          Length = 871

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 153/438 (34%), Gaps = 68/438 (15%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  G     H +    + +     +V  DM+      SIPV  V                
Sbjct: 442 AAPGIRM--HHYPSKGLSRNVAGTIV--DMMFKDIPTSIPVISVT------GTNGKTTTT 491

Query: 105 RSKATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R    ++ + G +VG TTT          I     CI   +        +     ++D  
Sbjct: 492 RLIGHVMTLAGYNVGMTTT--------GGIYVDNKCIEKGDTTGYNSARVILGNKEIDAA 543

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTG 221
           + E   +  G IR         + VIT I   HL       IE++A  K+ + E ++  G
Sbjct: 544 VLE--TARGGIIRKGLAYDLADVGVITNITEDHLGIDGIETIEDLAYVKSLVAEAVKDDG 601

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----EQSWMEVQL 276
            + +N D+     +  ++ +     I  F K+K     ++  KQ        +  + V+ 
Sbjct: 602 YVVINADNPVSLKILDRTKS----NIIMFSKNKYNPALVKNIKQGGCGIYTNEGTIYVEK 657

Query: 277 QGKSMEVV--------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRG 327
           Q K + +V         +G   +  +N +     +  L        K L+ F   +    
Sbjct: 658 QEKVVPMVKIQDVMITLNGKLTYNIENAMAACAALIGLNIKYSVIRKGLTSFYGDENYNP 717

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R+      G   ++D  Y  N    KA I+   +I      R I V+G   +    S  
Sbjct: 718 GRFNMYEINGVKVVLD--YGHNIEGYKAVINGAKEIK---HKRLIGVIGVPGDRTNSSTE 772

Query: 388 FHIDLAEVLSLYNISHVWL----------SGFHVLALKDAL------PRSIHVHYSETMD 431
           +   + E +S  +  ++++           G     +K  +       R I+V   +  +
Sbjct: 773 Y---IGE-ISGKSFDYIYIKEDKDRRGRKVGEIADIIKKGVVNSGFNERKINVI-LDEKE 827

Query: 432 GLFLFIQSSLVDGDVVVV 449
            L   I+ S+ +GD++++
Sbjct: 828 ALKKAIEDSV-EGDLIII 844


>gi|218135120|ref|ZP_03463924.1| hypothetical protein BACPEC_03025 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990505|gb|EEC56516.1| hypothetical protein BACPEC_03025 [Bacteroides pectinophilus ATCC
           43243]
          Length = 458

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 117/351 (33%), Gaps = 47/351 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +  II ITG+ GK+TT  +L   L S  K     G+    +     +A    D    + 
Sbjct: 107 FRDRIIGITGTKGKSTTTTLLYHVLKSSGKDVLLAGNIGIPVFE---IADGMNDTTTAVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +      V PH+A+   +   HL ++  + +  +AK  I+   +    +  
Sbjct: 164 ELSCHQLEYMD-----VSPHMAIYLNLHEEHLDHYGTMAKYTAAKENIYRHQKAGDKL-Y 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSF--GKSKNADFQL---RKWKQCSEQSWMEVQLQGKS 280
             D         + H      +Y+F  G    AD+ L     + +  +    E ++    
Sbjct: 218 CLD-------SLRPHETLPADVYTFRCGACSGADYSLSGGTIYYKDEDNGECEYRIPVGD 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++     IG H   ++              +   +AL  + P      R +         
Sbjct: 271 IK----LIGEHNYFDIAFVYAACRDCGVTDEQFTRALLSYEPLP---HRLQYVGTINGIK 323

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             D+S +    +   A++ L             ++G M          + +L + L+  +
Sbjct: 324 WYDDSISTIDETTIQALNTLKDAD-------TVLIGGMDRGIS-----YKELEQYLAHSD 371

Query: 401 ISHVWL---SG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           I ++ L   SG      +  +K        +HY + ++            G
Sbjct: 372 IKNIILMEASGKRILEEIELMKGEFESPERIHYVQHLEDAVSLAADITGAG 422


>gi|330877534|gb|EGH11683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 449

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 121/370 (32%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +     +        ++T       +   +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALSRVIKMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLFEGELQGAVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGLHNVANALATLAAARHVGVVPLLGVQALSSFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDAPIIAVV----EPRSNSMKLGAHRD-GLPESVQQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAG--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALQ 449


>gi|307248439|ref|ZP_07530460.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855081|gb|EFM87263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 439

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 134/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSSGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 337 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ- 393

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D +   I       D ++V  SN   F  +   LL+   A
Sbjct: 394 -PAKWSADLDEVVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 439


>gi|293611410|ref|ZP_06693706.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826282|gb|EFF84651.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 457

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 128/407 (31%), Gaps = 43/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V     +   +  +S P F  D VL                 ++ + G+
Sbjct: 67  VGNAMKRGIDAV--EYMLNEGLPYISGPQFLADHVLQ-------------GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +  + +       +   E          
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +        +    S   ++ A           + S  +V   G  + EV     G H  
Sbjct: 229 VLEMGCWTPVIRT-SLEANEKAALSAELISI--DGSHFKVLENGNVVGEVKWSMTGQHSV 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L T+     +   ++ A +ALS F   +   +R           + D+ +  +P ++
Sbjct: 286 ANALATIVAAQHVGVTLEQACEALSNFGGVK---RRMELLGTVNGIEVYDD-FAHHPTAI 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGFHV 411
              +         GE R  A++    E    +     H D     S      V       
Sbjct: 342 DTTLD--GARKRLGERRLWAII----EPRSNTMRMGSHKD-GLAHSARLADEVIWYQPEG 394

Query: 412 LALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L   D  P     S H   S ++D +   I +   +GD VV+  SN 
Sbjct: 395 LD-WDLQPVIEAASNHAQVSRSLDEIIKRIVNEAGEGDAVVIM-SNG 439


>gi|170288515|ref|YP_001738753.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
 gi|229620441|sp|B1L9S2|MURC_THESQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170176018|gb|ACB09070.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
          Length = 457

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 135/417 (32%), Gaps = 55/417 (13%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATII------- 111
           G  + V ++        L I    V D     V   + ++ +  RL     I+       
Sbjct: 45  GIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDILKREKKEE 104

Query: 112 -AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            A+TG+ GKTTT  M+   L  +KK       +   I   L            ++EL   
Sbjct: 105 FAVTGTDGKTTTTAMVAHVLKHLKK---SPTVFLGGIMDSLEHGNYEKGNGPVVYEL--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              E         P+  +IT     HL N+   +    SA  +I      T  +    +D
Sbjct: 159 --DESEEFFSEFSPNYLIITNARGDHLENYGNSLSRYRSAFEKISRN---TDLVVTFAED 213

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                L             +FG  K   + L        +    V+  GK   E+     
Sbjct: 214 ELTSHLGD----------VTFGVKKG-TYTLEMRSASRAEQKAVVEKNGKRYLELKLKVP 262

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYN 347
           G+H   N L  + +   L  D+   ++AL  F    G  +R+  A +     + + + Y 
Sbjct: 263 GFHNVLNALAVIALFDSLGYDLAPVLEALEEF---RGVHRRFSIAFHDPETNIYVIDDYA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVW 405
             P  ++  +    ++  +    +I V+        L +         ++     ++ V+
Sbjct: 320 HTPDEIRNLLQTAKEVFENE---KIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVY 376

Query: 406 LS------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +      G     + D+L       ++ E +  L   I   + +  V +   +   
Sbjct: 377 DAFEEKKNGVSGKMIWDSLKSLGKEAYFVEKLPELEKVIP--VSENTVFLFVGAGDI 431


>gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
 gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actF]
          Length = 474

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 123/368 (33%), Gaps = 40/368 (10%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT  ML+  L +     A +G+    +   + L
Sbjct: 99  GDVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLSAILEAAGHRTAAVGNIGVSLLDAV-L 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A  P DV     EL    L         VRPH A +  +AP HL     +   A+ K  +
Sbjct: 158 AEEPYDV--LAVELSSYQL----HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRV 211

Query: 214 FEGLEKTGTIFLNYDDSFFELL-KAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW 271
           +EG         N  D   E L +A     G + I ++ G  + ++  + +         
Sbjct: 212 YEG--NQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVVEGYLVDRAFV 269

Query: 272 MEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +   Q + +  V        H   N L    +              L  F P      R
Sbjct: 270 PDRAQQAQELAEVADVDPPAPHNIANALAAAALARAFGVPATAVRAGLRAFRPDP---HR 326

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       +D+S   N  + +A+++             I  +      G       
Sbjct: 327 IEHVATIDGVAYVDDSKATNTHAAEASLAAYEP---------IVWIAGGLAKGATFDELV 377

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSET--MDGLFLFIQSSL 441
              A+ L       V L G     +++AL R       + +  ++T  M           
Sbjct: 378 QGAAKRLRA-----VVLMGRDRALIREALARHAPNVPVVDLDRADTGAMSEAVREAAGLA 432

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 433 ESGDTVLL 440


>gi|293376048|ref|ZP_06622301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
 gi|292645349|gb|EFF63406.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
          Length = 449

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 133/413 (32%), Gaps = 48/413 (11%)

Query: 49  PHYDGHDFILH---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA------LNKLA 99
            + D  + +      +  G  L +++ D    + +  IP   V  +  A      +    
Sbjct: 45  ENEDAKEMVAEGFEVITGGHPLELLDRDFDLIVKNPGIPYLKVPLLKRAQELKIPIITEV 104

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A    +A  I ITG+ GKTTT  ++   L          G+      V   +A++   
Sbjct: 105 ELAFEICEAPFIGITGTNGKTTTTTLIYEMLKESTLNPLIAGNIGE---VATEVAKVAQA 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    L  +     L RP I+++  I  AHL     ++E   AK  + +    
Sbjct: 162 NQVLVTELSSFQLMGM----PLFRPRISLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTS 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 N +D        ++ A  I   +S  +     + L       E+  ++V+    
Sbjct: 218 DDYCVYNSEDDVIVEGIKQTKATCIP--FSLSEKVEGAYILEGAVYFKEEWIIDVK---- 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  Q++L  + +  +   D++     L  F   +    R +        
Sbjct: 272 ----DILLKGDHNLQDVLGAVAVSLLYGCDLEAIRTVLKRFAGVK---HRLQFVGEIKGV 324

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S   N  + + A+          +G  I + G +    +LS         V    
Sbjct: 325 KYYNNSKATNIIATQTALKAF-------DGPIILIAGGLDRGHDLS-------GLVPYFN 370

Query: 400 NISHVWLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            I  +   G       AL D     +     + +D          + GD+V+ 
Sbjct: 371 KIKSIVTYGETKHRFKALAD--EHLMPCTVYDHLDQAVEDAYEQAIAGDIVLF 421


>gi|222086446|ref|YP_002544980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein
           [Agrobacterium radiobacter K84]
 gi|221723894|gb|ACM27050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein
           [Agrobacterium radiobacter K84]
          Length = 470

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 23/270 (8%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L S  +
Sbjct: 82  PHWTVDLARAAGVEVIGDVELFVRERREHAPDCPFIAITGTNGKSTTTALIAHILQSSGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I         P    + + E     +     L   + P   ++  + P 
Sbjct: 142 DTQLGGNIGTAIL----TLDPPKAERYYVVECSSYQID----LAPTLDPSAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++  A  K  +  G   +G   +  DDS+  L+  +    G K I    +   
Sbjct: 194 HLDRHGTMQHYADIKERLVAG---SGVAIVGVDDSYSSLIADRIERAGAKVIRISRRHAL 250

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A     +  +  E S   ++ +   ++ +    G H AQN    +     +    D    
Sbjct: 251 AGGLYAEGSRIIEASICAIE-EIADLDGIQTLRGSHNAQNAAAAIAACLAVGVSGDDI-- 307

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      G   R +    +G    +++S
Sbjct: 308 -RAGLRSFPGLKHRMQPVGRRGRVVFVNDS 336


>gi|150020782|ref|YP_001306136.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
 gi|149793303|gb|ABR30751.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
          Length = 431

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 105/277 (37%), Gaps = 34/277 (12%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +FE+  S  G              +IT I   H+ NF  ++         FE   K   
Sbjct: 152 SVFEMDESQPGF-----ENYNADFLIITNIRYDHIENFESLQHY----NYCFEKSCKNAK 202

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +           + S     K   +FG  KNAD+++   ++   +  +++        
Sbjct: 203 ICI-----------SNSENNIEKNSITFGL-KNADYKILSIEKMGYKQKVKILTPYGIKN 250

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            + +  G H   N L  + +   L  +    +KA   F      G+R++   N+   T+I
Sbjct: 251 FLLNVPGIHNVLNALSVIALCFELGYEKSAVLKAFEDFVLP---GRRFQIYRNE-EITII 306

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
           D+ Y+  P  +K+ +    ++    + ++I ++        L + +  + A+ LS+ +  
Sbjct: 307 DD-YSHTPIEIKSLLLTAKEV---FKNKKIQIIFQPHRFTRLKREW-KEFAKALSIADKV 361

Query: 401 -ISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFL 435
            I+ V+ +   V  +    +   I+  +   ++ +  
Sbjct: 362 YITEVYGAFEKVGKISAKIIADEINATFLSNIEDILD 398


>gi|45644633|gb|AAS73021.1| predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 395

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 122/355 (34%), Gaps = 42/355 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDV 160
            R      + A++G+ GKTTT  ML       +K     IG  +        L       
Sbjct: 58  GRELKNRDVFAVSGTHGKTTTSYMLAHIFMDQEKDVGYLIGGISEQFSDSAKLGT----D 113

Query: 161 DFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + E            +  +   P   +I  I   H   F+ I++I      + + + 
Sbjct: 114 KIFVIEADEYDSAFFDKRSKFIHYSPLNLIINNIEFDHADIFNNIDDIKKQFHHLLKIVP 173

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K+G +    DD     +      L    +         D   +     ++          
Sbjct: 174 KSGNLIYFDDDQNTSDVIK--SGLWCNKVVIGSDHIEIDIPNKTLIIDNK---------- 221

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K +       G H  +N +  +   +     ++ +I +L  F   +   +R     +   
Sbjct: 222 KYLLKDLPLSGEHNFKNYVCAILAATKGGITIEQSIASLKKFKGVK---RRMDLVADILN 278

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHID-LAEV 395
             + D+ +  +P ++K + + +    P  +     +LG + E+G  + S  +H D L E 
Sbjct: 279 IKVYDD-FAHHPTAIKMSSNSIKDKYPIKK-----ILG-IVELGSNTMSSGYHKDNLIES 331

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           L + + + +      V    D L         ++ + +   I++ +++ D++++ 
Sbjct: 332 LKILDKTLLL----DVNNAYDYLNG------FDSEEKMLDCIRTEILEYDIILIM 376


>gi|114704924|ref|ZP_01437832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
 gi|114539709|gb|EAU42829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
          Length = 463

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 106/335 (31%), Gaps = 40/335 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L    +     G+    IGVP+   + P      + 
Sbjct: 111 PEARFVAITGTNGKSTTTALIAHCLKEAGRDTQLGGN----IGVPVLTLQEPTPERHYVV 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   ++P +A++  +   HL     IE  AS K  +  G        +
Sbjct: 167 ECSSYQID----LAPGLKPSVALLLNLTADHLDRHGTIEHYASVKERLVVG---ADRAVI 219

Query: 226 NYDDSFFELLKAKSHALG--IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             DD +   +  +  A G  +  I   G               +   + E       +  
Sbjct: 220 GADDIWCRAIADRIEAAGRPVVRISGQGAVAGGVGYADGIVVRALDGFSEASFD---LTG 276

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H  QN    +  +++        +K L  F    G   R       G    I+
Sbjct: 277 IGSLRGRHNGQNAAAAVAALTLCDVGEAQILKGLRSF---PGLAHRMEEVGRIGKTLFIN 333

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYN 400
           +S   N  +   A++   +I     G     L   G + E+                   
Sbjct: 334 DSKATNADAAATALASFERIYWIAGG-----LPKEGGIAELSRFFP-------------K 375

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           I   +L G    A    L   +    S T+D    
Sbjct: 376 IVKAYLIGEAAPAFAATLGEDVAYEISATLDNAVA 410


>gi|222099426|ref|YP_002533994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
 gi|254766063|sp|B9K6P5|MURD_THENN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221571816|gb|ACM22628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
          Length = 432

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 123/349 (35%), Gaps = 57/349 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITG+ GK+T+  ++  ALS         G++         +  +  D D+ + E
Sbjct: 101 KEKVIGITGTNGKSTSAALMHHALSHRGLKVFLGGNFGTP-----AVEALREDYDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L    F     R    V+  I+  HL   S  +E  ++K +     E+  T   N
Sbjct: 156 VSSFQL----FWCERPRVSRFVLLNISEDHLDWHSSFKEYLNSKLKPAFFQEEKDTFVYN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283
            +    E L                       + +K    +E +++E   + LQGKS   
Sbjct: 212 KNIETLEDLSR--------------------VKPKKIPFWTEDTFVEENRLVLQGKSF-- 249

Query: 284 VHHGIGYH---MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                G +   M +N+L    + + L  DV+  + +L  F P      R          +
Sbjct: 250 --PLPGSYPLQMKENILAVSVLYNELFGDVEGFLDSLRSFKPLP---HRMEFLGKIKGRS 304

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S      S  A +  LS        R I +   MC +G+     +    E      
Sbjct: 305 FYNDSKA---TSTHAVLGALSNFD-----RVILI---MCGIGKNEN--YSVFIERARPR- 350

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I H+ + G     L+  L  ++       ++  F        +GDV++ 
Sbjct: 351 IKHLIVFGEIYRDLRPFLS-NVPYSIVSDLEEAFRKALEVSEEGDVILF 398


>gi|241205559|ref|YP_002976655.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859449|gb|ACS57116.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 470

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 106/327 (32%), Gaps = 32/327 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L S        G+    IG  +     P    + + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILKSAGYDTQLGGN----IGTAVLTLDPPKAERYYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +    +
Sbjct: 168 ECSSYQID----LAPTLDPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG---SDVAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DDS   L+  +    G+K +    ++  AD       +           L    ++ +
Sbjct: 221 GIDDSHSALIADRVERAGVKVVRISRRNVVADGIYAEGTRLIKAAGG--AMLPFVDLDGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H AQN    +     +    D      + F    G   R +    +G    +++
Sbjct: 279 QTLRGSHNAQNAAAAVAACLAVGVSADDIRAGFASF---PGLKHRMQPVGQRGRVVFVND 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A+S   +I     G     L     +  L+  F            I+  
Sbjct: 336 SKATNADAAAPALSSYDRIYWIAGG-----LPKAGGITTLAPYFPR----------IAKA 380

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMD 431
           +L G         L  ++    S+T++
Sbjct: 381 YLIGEAAAEFAATLGEAVPYEISDTLE 407


>gi|224418672|ref|ZP_03656678.1| UDP-N-acetylmuramate--L-alanine ligase [Helicobacter canadensis MIT
           98-5491]
 gi|253826790|ref|ZP_04869675.1| UDP-N-acetylmuramate--L-alanine ligase [Helicobacter canadensis MIT
           98-5491]
 gi|313142196|ref|ZP_07804389.1| UDP-N-acetylmuramate-L-alanine ligase [Helicobacter canadensis MIT
           98-5491]
 gi|253510196|gb|EES88855.1| UDP-N-acetylmuramate--L-alanine ligase [Helicobacter canadensis MIT
           98-5491]
 gi|313131227|gb|EFR48844.1| UDP-N-acetylmuramate-L-alanine ligase [Helicobacter canadensis MIT
           98-5491]
          Length = 444

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 135/365 (36%), Gaps = 49/365 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++    + +     + A+ G+ GK+TT  +L+  L     + A IG+ +   G   
Sbjct: 90  IAVLSRKEALSLILKDKQVYAVAGAHGKSTTTAILSAILQE---SSALIGAESKEFGSNT 146

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAK 210
              +     +  +FE   S    +        P+ A++T   P H+  +   +E    A 
Sbjct: 147 RALK----TNKVVFEADESDKSFLE-----CNPYCAIVTNAEPEHMETYGHNLEVFYQAY 197

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +    LE      +N +D F + L+ +        +Y     +N ++ L+  +    ++
Sbjct: 198 RDF---LELAKYRVINAEDEFLKTLQCEC-----VRLYPSKDIENIEYFLKDGEP---KT 246

Query: 271 WMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              ++  GK + V   +G+G H+A +  + +        +V+   + +  F      G +
Sbjct: 247 RFRLKNSGKDLGVFEVYGLGEHIALDAALAILAALEC-MEVEQIRQNIQNF-----CGIK 300

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  +      LI + Y  +P  +KA +  L +     + ++I  +    +   +  +  
Sbjct: 301 KRFDILSKGKCLIVDDYAHHPTEIKATLKSLKKYQELTQYQQICGIWQPHKYSRILDNL- 359

Query: 390 IDLAEVLSLYNISH-----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +  E  S   I       V+  G    A K+     +   Y  T             +G
Sbjct: 360 EEFVECFS--GIDRLVILPVYAVGE---AKKEINFSKLFAKYQPTFADFVK------REG 408

Query: 445 D-VVV 448
           D +V+
Sbjct: 409 DSLVL 413


>gi|307264124|ref|ZP_07545719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306870540|gb|EFN02289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 439

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 134/411 (32%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 52  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 111

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 112 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 168

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 169 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I   G+ K    Q       ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 229 I---GEDK----QWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 281

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I  L     
Sbjct: 282 AGVSVAGACDALGSFINAN---RRLEVKGEVKGITVYDD-FAHHPTAIAATIDALRG-KV 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LSGFHVLALKDALP 419
             E R +AVL    E    +     H  ++A  L+  N   V+      + V  + D L 
Sbjct: 337 GKEQRILAVL----EPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLT 392

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +     +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 393 Q--PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 439


>gi|291536441|emb|CBL09553.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 454

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 117/366 (31%), Gaps = 50/366 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +  +A R   K  + AITG+ GKTTT  ++   L         +G+         ++  
Sbjct: 98  GEAELAYRFE-KGRVAAITGTNGKTTTTTLVGEILKKCYPEVFVVGNIGIPYT---SIVE 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +    + E+    L  +        P ++ I  I P HL     +E    AK  I +
Sbjct: 154 KTTEQTVTVTEISSFQLETMETF----HPSVSAILNITPDHLDRHHTMEAYIRAKESITK 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--- 272
              K  T  LNY+D                 +  F             +   E  ++   
Sbjct: 210 CQTKEDTCVLNYEDEILRKFAETLKV----NVLFFSSK----------RPLEEGIYLQEN 255

Query: 273 EVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + + GK  E            +G H  +N++   G    + A +D   + L  F   + 
Sbjct: 256 TIWIAGKETERQRLIDVGELKLLGIHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVK- 314

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       ++S   NP    AAI  +  ++     R+  ++G     G   
Sbjct: 315 --HRIEFVRDLQGVLYYNDSKATNPD---AAIRGIGSMN-----RKTLLIG-----GGYD 359

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVD 443
           ++   D         +  + L G     +     +    ++   +T++            
Sbjct: 360 KNLEFDAWIESFDGKVKCLLLIGQTKDKIAVCARKHGFENIVCCDTLNEAVNICYRLAKP 419

Query: 444 GDVVVV 449
           G+ V++
Sbjct: 420 GEAVLL 425


>gi|145633553|ref|ZP_01789281.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae 3655]
 gi|229845733|ref|ZP_04465854.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 6P18H1]
 gi|144985759|gb|EDJ92373.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae 3655]
 gi|229811346|gb|EEP47054.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 6P18H1]
          Length = 453

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 144/408 (35%), Gaps = 32/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNSCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L   P    + + E            +  +   P 
Sbjct: 125 ILEQNGLKPGFLIGGIAGNFGISARLGTSP----YFVIEADEYDTAFFDKRSKFIHYNPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 181 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 237 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 294 HAGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-K 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             G  R +AVL    E    +     H  D+A  L   +   +         + D   + 
Sbjct: 349 VGGGVRILAVL----EPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQC 404

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
           +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 405 VQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|260583266|ref|ZP_05851042.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae NT127]
 gi|260093673|gb|EEW77585.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae NT127]
          Length = 453

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 146/410 (35%), Gaps = 36/410 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L   P    + + E            +  +   P 
Sbjct: 125 ILEQNGLKPGFLIGGIAGNFGISARLGTSP----YFVIEADEYDTAFFDKRSKFIHYNPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 181 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 237 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 294 HAGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-K 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVLA--LKDALP 419
             G  R +AVL    E    +     H D  ++         V++     L+  + D   
Sbjct: 349 VGGGVRILAVL----EPRSNTMKMGVHKD--DIAPALGRADEVFMLQPEQLSWEVADIAN 402

Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
           + +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 403 QCVQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|190150723|ref|YP_001969248.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915854|gb|ACE62106.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 454

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 134/411 (32%), Gaps = 32/411 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 67  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 127 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +   G I     D   +          ++ 
Sbjct: 184 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSGGCILSAAADENVQNTLKMGSYSELQF 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I   G+ K    Q       ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 244 I---GEDK----QWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I  L     
Sbjct: 297 AGVSVAGACDALGSFINAN---RRLEVKGEVKGITVYDD-FAHHPTAIAATIDALRG-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--H-IDLAEVLSLYNISHVW---LSGFHVLALKDALP 419
             E R +AVL    E    +     H  ++A  L+  N   V+      + V  + D L 
Sbjct: 352 GKEQRILAVL----EPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLT 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +     +S  +D L   I       D ++V  SN   F  +   LL+   A
Sbjct: 408 Q--PAKWSADLDELVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 454


>gi|187777289|ref|ZP_02993762.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
 gi|187774217|gb|EDU38019.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
          Length = 873

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 140/380 (36%), Gaps = 50/380 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS + K      +   +I                 T+
Sbjct: 476 TIPIISITGTNGKTTTTRLIAHTLSLLGKKVGMTTTGGIYINNKCIDKGDTTGYYSARTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G I+         + VIT I   H  L   + +E++A  K+
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIKAGLPYDLADVGVITNITEDHLGLGGINTLEDMAYVKS 592

Query: 212 EIFEGLEKTGTIFLNYDDS----FFELLKAK----SHALGIKTIYSFGKSKNADFQL-RK 262
            + E ++K G + +N DD       + + +K    +       +  +  +KN    L   
Sbjct: 593 LVGEAVKKDGYVVINADDKASLNIIDRMTSKIILFTKNKNNPIVSKYLNNKNLIVYLEEN 652

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                  +  +  +      +   G   +  +N++ ++  +  L  D++T  + L  F  
Sbjct: 653 IIYLQNLNENKEIINVNKAPITLGGKLTYNIENIMASIAALIALGLDINTIREGLESFTN 712

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +E    R+      G   ++D  Y  N    K  +  + +I      R I V+G     G
Sbjct: 713 EEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESVKKID---HKRIIGVIGVP---G 764

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETMDGLFL 435
           + + S  + +  +    N  ++++       G     +   L + I  + +  +   + L
Sbjct: 765 DRTNSSTLKVGNICGE-NFDYIYVKEDRDKRGREHGEIAGLLKKGILEMGFKNSKLDIIL 823

Query: 436 FIQSSLV-------DGDVVV 448
             + +L         GD+V+
Sbjct: 824 DEEEALKKAIEFSEPGDLVI 843


>gi|221065159|ref|ZP_03541264.1| UDP-N-acetylmuramate [Comamonas testosteroni KF-1]
 gi|220710182|gb|EED65550.1| UDP-N-acetylmuramate [Comamonas testosteroni KF-1]
          Length = 487

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 128/397 (32%), Gaps = 52/397 (13%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  +     ++A+ G+ GKTTT  MLT  L          +G      GV   L  + 
Sbjct: 117 WLAEHVLHGRHVLAVAGTHGKTTTTSMLTWVLECAGLQPGFLVGGVPLDFGVSARLGAVR 176

Query: 158 V---------DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
                     D    + E            +  V  RP  AV+  +   H   F  +  I
Sbjct: 177 RPVTGPGPVGDQPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAI 236

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 +   +  TG +  N  +     + A+        + SFG +      +  +   
Sbjct: 237 ERQFHHLVRTVPSTGRVVSNGLEESLSRVLAQG---CWSEVRSFGAT------VSDFSAD 287

Query: 267 SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +     V  +G+ + ++     G H   N L  +     L    + A +ALS F   + 
Sbjct: 288 GDPGDFAVLQRGQKVAQLRWSLTGVHNQLNALAAIAAADHLGVSAELACEALSRFQNVK- 346

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV---------LG 376
             +R           + D+ +  +P +++  +  L +     + R +AV         LG
Sbjct: 347 --RRMELRGTVNGIDVYDD-FAHHPTAIRTTLDGLRR-KLGAQARILAVFEPRSNTMKLG 402

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----ALPRSIHVHYSETMDG 432
            M      S          L   ++     +G    A +      +  S     +  ++ 
Sbjct: 403 TMKSQLPWS----------LESADLVFCHTAGLDWDAAEALESMGVGPSQRAQVAGDIET 452

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           L   I +    GD +V   SN  GF  +   LL+   
Sbjct: 453 LIAQITAVARPGDHIVCM-SNG-GFGSIHAKLLQALK 487


>gi|190892585|ref|YP_001979127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium etli
           CIAT 652]
 gi|190697864|gb|ACE91949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CIAT 652]
          Length = 470

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 17/241 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L S        G+    IG  +     P    + + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILRSAGYDTQLGGN----IGTAVLTLDPPKAERYYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +    +
Sbjct: 168 ECSSYQID----LAPTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG---SDVAVV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DDS   L+  +    G+K +    ++  AD       K           L    ++ +
Sbjct: 221 GIDDSHSALIADRVQRAGVKMVRISRRNVVADGIYAEGTKLVQAAGG--AMLPFADLDGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H AQN    +     +    D     L+ F    G   R +    +G    +++
Sbjct: 279 QTLRGSHNAQNAAAAVAACLAVGVSADDIRAGLASF---PGLKHRMQPVGRRGRVVFVND 335

Query: 345 S 345
           S
Sbjct: 336 S 336


>gi|289704957|ref|ZP_06501372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
 gi|289558293|gb|EFD51569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
          Length = 527

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 85/282 (30%), Gaps = 25/282 (8%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  A      A R  +    + +TG+ GKTTT  M+   L +  +     G+    +  
Sbjct: 131 DVELAWRLRERAGRKTAD--WVCLTGTNGKTTTVTMVEAILRADGRRAVACGNVGTPVLD 188

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +   R P   D    EL    L      TH + P  + +  +A  H+     +EE A+A
Sbjct: 189 AI---RDPEGFDVLALELSSFQL----HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAA 241

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +++           N  D     L  ++          F         L         
Sbjct: 242 KGKVYANTRV--ACVFNEQDPVTRTLVERADVQEGCRAIGFTTDTPG---LSDIGVVDGI 296

Query: 270 SWMEVQLQGKSMEVVH--------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                 L  +  E +              H   N      +   +        + L  + 
Sbjct: 297 LVDRAFLDNRRHEAIALAERADLGPVAPRHTVANAAAAAALTRAVGVSPAAVAEGLRSYD 356

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             E    R +          +++S   NP +  A+++  S +
Sbjct: 357 RGE---HRIQLVATSRDIMWVNDSKATNPHAADASLAAFSSV 395


>gi|301381930|ref|ZP_07230348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato Max13]
 gi|302058602|ref|ZP_07250143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato K40]
 gi|302130571|ref|ZP_07256561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 449

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++       F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGGTPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +     +        ++T       +   +Q R      + S  EV  +G+    V  G
Sbjct: 222 TEPALSRVIKMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLFEGELQGAVEWG 274

Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           + G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGLHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDAPIIAVI----EPRSNSMKLGAHRD-GLPESVQQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A   A   ++     ++++ +   ++S    G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAA--GTVPALVCDSLEAIIAQVKSQAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALQ 449


>gi|224532035|ref|ZP_03672667.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
 gi|224511500|gb|EEF81906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
          Length = 451

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 127/373 (34%), Gaps = 47/373 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIA+TG+ GK+T   +L   L          G+       PL+           I E
Sbjct: 110 KNPIIAVTGTKGKSTLASLLYQVLKKKYPRAKLGGNIGVS---PLSFFDQLDGRSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P ++++T I   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPILSIVTNIYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    DF L  +     + +   +L G   E    
Sbjct: 221 QDKAYYKYF---SKFESKAKVILFSEFNPCDFDLDVFYCNKGKVYFNNKLIGSFSESQV- 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                     L+T  +   L    +   + L+ F   E R +  +   N       +++ 
Sbjct: 277 ----VFMIPKLITFFVSYYLNIGFNHVFQILNNFKGIEHRLEFVKLIQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L     H       ++G     G   +      +++++    + + +
Sbjct: 330 STIPDSTVLSVKSLKTNDNHIN----LIVG-----GTDKELDFSSFSKIINCVK-TWILI 379

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVVK-SS---------- 452
            G   + +   L +S   ++    D L   +  +L     GD+V+   +S          
Sbjct: 380 KGSATVKIIKILEKSSIQYFV--FDSLKDSVNHALKVSSPGDIVLFSPASASFELFNNEF 437

Query: 453 -NSCGFYRLINLL 464
                F  L+N+L
Sbjct: 438 DRGLQFKNLVNML 450


>gi|303252423|ref|ZP_07338588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648696|gb|EFL78887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 454

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 134/409 (32%), Gaps = 28/409 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 67  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDRWVLAVSGTHGKTTTTGMLAW 126

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     +     ++       F + E            +  V   P  
Sbjct: 127 ILDQNNLDA---GFLIGGVAGNFGISARAGSSKFFVIEADEYDSAFFDKRSKFVHYTPKT 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I   H   F  ++ I      +   +  +G I     D   +          ++ 
Sbjct: 184 LIINNIEFDHADIFDDLKAIQRQFHHLVRTMPSSGCILSAAADENVQNTLKMGSYSELQF 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      ++  +  +     ++ S  EV  +G+   EV  + IG H   N LM +     
Sbjct: 244 I-----GEDKQWFAKPI--SADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  A  AL  F       +R          T+ D+ +  +P ++ A I+ L     
Sbjct: 297 AGVSVAGACDALGSFINAN---RRLEVKGEVNGITVYDD-FAHHPTAIAATINALRG-KV 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVW---LSGFHVLALKDALPRS 421
             E R +AVL        +    H  ++A  L   N   V+      + V  + D L + 
Sbjct: 352 GKEQRILAVLE--PRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ- 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +S  +D +   I       D ++V  SN   F  +   LL+   A
Sbjct: 409 -PAKWSADLDEVVKMIVEEAKPTDHILVM-SNG-AFGGIHQKLLQALKA 454


>gi|325290584|ref|YP_004266765.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965985|gb|ADY56764.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 445

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 126/428 (29%), Gaps = 88/428 (20%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA------- 138
            G+D +   L +L           I+ I G+ GK +T   L+  L S             
Sbjct: 28  LGLDRIRSLLARL---GNPERSLKIVHIGGTNGKGSTAAFLSAILRSAGYRTGMFISPHL 84

Query: 139 -------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF-------------- 177
                   I          ++L +        +   G+ H  E                 
Sbjct: 85  EDYRERITIDGQMIGRSDFVSLLKEIKPHLQAVVASGIEHPTEFEVSTVLAILYFARLQP 144

Query: 178 --------------LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
                          T++V P IAVIT+I   H+      I EIA  KA I     K G 
Sbjct: 145 DIVLMEVGLGGEIDSTNVVNPLIAVITSIGLDHMDYLGRTIAEIARVKAGII----KEGV 200

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-----EVQLQ 277
             +            K+ AL + T       K  + Q    +   + SW          Q
Sbjct: 201 PVV--------TSAEKAEALAVLT------EKARECQAELIRVGQDVSWQQRGPRSFDYQ 246

Query: 278 GKSMEV---VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           G+   +       +G H   N    L +  +L       I   +V    +      R  +
Sbjct: 247 GRQWRIKGLKPALLGRHQFSNACAALAVCEVLRDRYGFGITKENVVQGLQSAEWPCRLEV 306

Query: 335 NQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 ++ +    N   M A    L S++       +  VL     +G L+       A
Sbjct: 307 FSAEPKIVLDG-AHNADGMTALRDALESELRDTVLAGKRLVL----CLGMLADKEREKAA 361

Query: 394 EVLSLYNISHVWLSGFHV------LALKDALPRSI---HVHYSETMDGLFLFIQSSLVDG 444
           E+L       V ++           +L+D   R I    V   E  +         L  G
Sbjct: 362 EILFPL-ADQVIITKPDSPRAGNWRSLQDVAGRMIGPDKVRSIEDPEQAVREGLEMLAPG 420

Query: 445 DVVVVKSS 452
           D+++V  S
Sbjct: 421 DMLLVTGS 428


>gi|163856171|ref|YP_001630469.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259899|emb|CAP42200.1| cyanophycin synthetase [Bordetella petrii]
          Length = 946

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 117/385 (30%), Gaps = 54/385 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  ++ ITG+ GKT    ++   L+   +      S   ++G  L  A    D   G   
Sbjct: 556 RIPVVGITGANGKTVVARLVARLLALAGRHTGLACSEGLYLGSRLVQAGDRADWASGRRL 615

Query: 167 LGMSHLGEIRFLTH-----------LVRPHIAVITTIAP-AHLSNFS--GIEEIASAKAE 212
           L M+   E   + +             R  + V+T I    HL +F     + +A+    
Sbjct: 616 L-MNRSVEAAVIENDSAVILGQGLAYDRCQVGVVTNIDQGDHLGDFDIQDTDRLANVFRT 674

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G   LN  D     +      L    +  FG          +  Q     ++
Sbjct: 675 QVDVVLPGGAAVLNARDPLVAGMA----PLCDGDVVFFGIDPGLPAIAEQLAQGKRAVFL 730

Query: 273 E----VQLQGKS---------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                V  +G++         + + H        +N+L  +G    L          +  
Sbjct: 731 RGGSIVLAEGRNETPLADIAAIPLTHGARVGFQVENVLAAVGTAWALGIPDAIIRAGIEA 790

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F   +           +G  T++ +    N ++++A I   ++       RR AV     
Sbjct: 791 FDIDQADAPWQFTLFERGGATVVVDDV-HNASALQALIDAAARFPAS---RRCAVYAAGA 846

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRSIH---VH 425
              +   +  I+   +L+      V L            G     L+  L +      V 
Sbjct: 847 ---DRRDADLIEQGRLLAGA-FDRVVLYDDATVTSRRPAGQARALLRQGLAQGTRPIDVQ 902

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVK 450
                          +  GD V+++
Sbjct: 903 DEPDHALAIGLALDHIQAGDFVLLQ 927


>gi|319896772|ref|YP_004134966.1| udp-n-acetylmuramate:l-alanyl-gamma-d-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3031]
 gi|317432275|emb|CBY80627.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3031]
          Length = 453

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 144/409 (35%), Gaps = 34/409 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYISGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I     ++    D  + + E            +  V   P  
Sbjct: 125 ILEQNGLN---PGFLIGGIAGNFGISARLGDSPYFVIEADEYDTAFFDKRSKFVHYNPRT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  +
Sbjct: 182 LIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCWS 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
              F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 238 QQQF-LGKDNEWFAERI--TNDASHFVVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAHH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 TGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYN-ISHVWLSGFHVLA--LKDALPR 420
            G  R +AVL    E    +     H D  ++         V++     L+  + D   +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKD--DIAPALGRADEVFMLQPEQLSWEVADIANQ 403

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
            +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 404 CVQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|56416531|ref|YP_153605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma
           marginale str. St. Maries]
 gi|62900477|sp|Q5PBH9|MURD_ANAMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56387763|gb|AAV86350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma
           marginale str. St. Maries]
          Length = 438

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 119/350 (34%), Gaps = 45/350 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +I +TG+ GK+TT E++   L+         G+          +  +P      
Sbjct: 91  RSRPARLIGVTGTNGKSTTVELIGWILNRAGIDSETGGNIGKG------VLSLPQGKAAY 144

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    L  +R     V   + VI  I P HL  +S + +  +AK  I   LE +  +
Sbjct: 145 ILELSSYQLELMR----GVNLDVGVILNITPNHLDVYSNMADYIAAKGRI---LEFSNLL 197

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N  DS    L      +G    +S GK       +   +   +    E+   G  ++ 
Sbjct: 198 VANCGDSNTAHL---CENVGNMVEFSCGKKLARGVSVLDGRIYFQGRVAEI--GGLKIDS 252

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                    A+N+  +  +   L    +  + ++  F    G   R +        T ++
Sbjct: 253 AS------NAENIAASYAVAKSLGVSDEVIMASIREF---PGLRHRNQVVAEVANVTFVN 303

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S     AS+  A+     +     G+              S+   I+    L    I  
Sbjct: 304 DSKATTAASVAKALVSRENVYWIAGGK--------------SKDGGIEPILSLYANRIRK 349

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDG--DVVVV 449
            +L G        +L R+   HV   +  + + +    ++  G    V++
Sbjct: 350 AFLVGEAADMFAVSLQRARVEHVMCYDVYNAVQIAFAEAIASGTKATVLL 399


>gi|71275714|ref|ZP_00651999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Dixon]
 gi|71897830|ref|ZP_00680056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
 gi|71163605|gb|EAO13322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Dixon]
 gi|71732385|gb|EAO34439.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
          Length = 471

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 137/422 (32%), Gaps = 41/422 (9%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           ++   +      VVV      S G+ ++                +A R+      +A+ G
Sbjct: 54  YLPEHIAADCAEVVVG--NALSRGNAAVEALLDSGCRYISGPQWLAERVLPGRDTLAVAG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHI--------------GVPLTLARMPVDV 160
           + GKTTT  +L   L +  +     IG    +                 PL    +   V
Sbjct: 112 THGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEVSAAV 171

Query: 161 DFG-IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP +A++  +   H   F  +  I      +   +
Sbjct: 172 RPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHLVRTI 231

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + +N +D   + L           +  FG      +  R     ++ S   V  +
Sbjct: 232 PGRGRLIVNGED---QRLAEVLAMGCWTPVERFGFDPEFHWSARLI--AADGSRFSVWHE 286

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G  + +V    +G H   N+L  L     +       I +L+ F   +   +R  C   +
Sbjct: 287 GCEVGQVRWSLLGRHNVLNVLAALAAAHAVGVAPAAVIPSLTQFRSVK---RRLECLGER 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC----EMGELSQSFHIDL 392
           G  T+ D+ +  +P ++    + L  +  +    RI V  +M      +G  +Q+    L
Sbjct: 344 GAVTVYDD-FAHHPTAIA---TTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSL 399

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               ++  + H  L       +         VH     +GL   +   +   D VV   S
Sbjct: 400 QAADTVVFLDHPGLVWNAAGVVAQM---HGQVHVVHDTEGLLSMLNEVVHASDHVVFM-S 455

Query: 453 NS 454
           N 
Sbjct: 456 NG 457


>gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 12/190 (6%)

Query: 207 ASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263
            +AKA++F  +         +N DD       A         + +F  ++K+AD    K+
Sbjct: 35  KNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIA--QGNPDVPVVTFAMENKDADVHPLKF 92

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +    ++ + VQ     +E+    +G H   N+L  + +   + A ++  ++ +      
Sbjct: 93  ELSLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAV 152

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R      +  F +I + Y   P ++   +  + ++      R I V G   E   
Sbjct: 153 PG---RCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELGA---RRIITVFGCAGESDR 205

Query: 384 LSQSFHIDLA 393
             +     +A
Sbjct: 206 GKRPIMTKIA 215


>gi|257452945|ref|ZP_05618244.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           3_1_5R]
 gi|317059486|ref|ZP_07923971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_5R]
 gi|313685162|gb|EFS21997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_5R]
          Length = 433

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 141/370 (38%), Gaps = 49/370 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D++  A   +    R     TI+A+TG+ GKTTT   +   L+   K  A  G+      
Sbjct: 75  DEIEIAYQYMVKTNR---NMTIVAVTGTNGKTTTTSKIAELLNYAGKKAAAAGNIGRSF- 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             + +     + ++ + EL    L  +   T    P+I+++T + P HL+ +  +++   
Sbjct: 131 --VDVLLSEENYEYAVLELSSYQLENVYEFT----PYISLVTNLTPDHLTRYETLKDYYD 184

Query: 209 AKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K  I +  ++  + FL N D    E L+ + + +  K I S  K ++AD  +R  K   
Sbjct: 185 TKFRICQNQKEENSFFLYNID---HEELRKRENLMKGKKI-SLSKEQDADTCVRNGK--- 237

Query: 268 EQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +  Q + +  V      G H  +N L  +    +L  D              E 
Sbjct: 238 ------IIFQEEEIMQVSELSLKGNHNLENSLFIITAGKLLGLDTKVI---REFLMNTEP 288

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R       G    I++S   N  S K A+           G  I + G   +  +L+
Sbjct: 289 LEHRMERCFQYGKVQFINDSKGTNIDSAKFALEA-------YPGC-ILICGGFDKKVDLN 340

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSL 441
                 LA+++    +  V+L G     +K  L         ++  ET++   L ++   
Sbjct: 341 P-----LADIIVK-QVKEVYLIGVIAEKIKSLLLERNYPVEKIYSLETIENSLLDMKKRF 394

Query: 442 VDGD--VVVV 449
              D  ++++
Sbjct: 395 TKEDEELILL 404


>gi|325959937|ref|YP_004291403.1| Mur ligase middle domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331369|gb|ADZ10431.1| Mur ligase middle domain protein [Methanobacterium sp. AL-21]
          Length = 508

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 117/370 (31%), Gaps = 70/370 (18%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIG 141
           V  VDD L          + +    ++ ++G+ GKTTT  +L     ++      +  I 
Sbjct: 99  VMTVDDCL---------NQFKPDKPVLCVSGTNGKTTTTTLLKHICRTMDLKPTEHGFIK 149

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
              N   +P   AR+  DV   + E G     G++  +     P   V+T I P HL   
Sbjct: 150 LQGNIDYIPPLQARLKGDV--AVLETGTFGNTGDLEIMMKRCEPDCGVLTNINPDHLDKT 207

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK------------SHALGIK--- 245
                 A  K E  +  +K   + +N DD     L               +  +G K   
Sbjct: 208 HDFINYARIKGEFVDYFQKKK-LIINSDDPTVWGLIKNPDSVIKFGVDTTTEDVGYKECW 266

Query: 246 ---------TIYSFG--------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    TI   G        K    D+     ++   +   +++      EV    I
Sbjct: 267 CGNEIEINETITGSGYYQCECGLKRPEPDYLAFDVEES--EGRFKLKTPDSVFEVKMKLI 324

Query: 289 GYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           G H   N+   +          +D  + A+  F    G   R           +I + Y 
Sbjct: 325 GLHNVYNVTGAIVAAREYFNLPMDKILTAVETFEGVSG---RIEHLFTHEEMEVILD-YG 380

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NPA ++  +  L ++          VL    E GE     H D+           V   
Sbjct: 381 HNPAGIETVLRELKKVYETI----TVVLTVSSESGE-----HGDV------EIFDKVLKF 425

Query: 408 GFHVLALKDA 417
           G  ++    A
Sbjct: 426 GDFIVPASHA 435


>gi|148269829|ref|YP_001244289.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga petrophila RKU-1]
 gi|166224745|sp|A5IKJ0|MURC_THEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147735373|gb|ABQ46713.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga petrophila
           RKU-1]
          Length = 457

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 135/417 (32%), Gaps = 55/417 (13%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATII------- 111
           G  + V ++        L I    V D     V   + ++ V  RL     I+       
Sbjct: 45  GIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPVENRLHYFRDILKREKKEE 104

Query: 112 -AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            A+TG+ GKTTT  M+   L  +KK       +   I   L            ++EL   
Sbjct: 105 FAVTGTDGKTTTTAMVAHVLKHLKK---SPTVFLGGIMDSLEHGNYEKGNGPVVYEL--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              E         P+  +IT     HL N+   +    SA  +I      T  +    +D
Sbjct: 159 --DESEEFFSEFSPNYLIITNARGDHLENYGNSLSRYRSAFEKISRN---TDLVVTFAED 213

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                L             +FG  K   + L        +    V+  GK   E+     
Sbjct: 214 ELTSHLGD----------VTFGVKKG-TYTLEMRSASRAEQKAVVEKNGKRYLELKLKVP 262

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYN 347
           G+H   N L  + +   L  D+   ++AL  F    G  +R+  A +     + + + Y 
Sbjct: 263 GFHNVLNALAVIALFDSLGYDLAPVLEALEEF---RGVHRRFSIAFHDPETNIYVIDDYA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVW 405
             P  ++  +    ++  +    +I V+        L +         ++     ++ V+
Sbjct: 320 HTPDEIRNLLQTAKEVFENE---KIVVIFQPHRYTRLEREDGNFAKALQLADEVVVTEVY 376

Query: 406 LS------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +      G     + D+L       ++ E +  L   I   + +  V +   +   
Sbjct: 377 DAFEERKNGISGKMIWDSLKSLGKEAYFVEKLPELEKVIP--VSENTVFLFVGAGDI 431


>gi|254994751|ref|ZP_05276941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Mississippi]
 gi|255004003|ref|ZP_05278804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Virginia]
          Length = 454

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 119/350 (34%), Gaps = 45/350 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +I +TG+ GK+TT E++   L+         G+          +  +P      
Sbjct: 107 RSRPARLIGVTGTNGKSTTVELIGWILNRAGIDSETGGNIGKG------VLSLPQGKAAY 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    L  +R     V   + VI  I P HL  +S + +  +AK  I   LE +  +
Sbjct: 161 ILELSSYQLELMR----GVNLDVGVILNITPNHLDVYSNMADYIAAKGRI---LEFSNLL 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N  DS    L      +G    +S GK       +   +   +    E+   G  ++ 
Sbjct: 214 VANCGDSNTAHL---CENVGNMVEFSCGKKLARGVSVLDGRIYFQGRVAEI--GGLKIDS 268

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                    A+N+  +  +   L    +  + ++  F    G   R +        T ++
Sbjct: 269 AS------NAENIAASYAVAKSLGVSDEVIMASIREF---PGLRHRNQVVAEVANVTFVN 319

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S     AS+  A+     +     G+              S+   I+    L    I  
Sbjct: 320 DSKATTAASVAKALVSRENVYWIAGGK--------------SKDGGIEPILSLYANRIRK 365

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDG--DVVVV 449
            +L G        +L R+   HV   +  + + +    ++  G    V++
Sbjct: 366 AFLVGEAADMFAVSLQRARVEHVMCYDVYNAVQIAFAEAIASGTKATVLL 415


>gi|153854695|ref|ZP_01995945.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
 gi|149752799|gb|EDM62730.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
          Length = 451

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 126/376 (33%), Gaps = 50/376 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   + + ++    +G+         T      D    + E
Sbjct: 108 KGDVLAITGTNGKTTTTTLLGEIMKNYQEDVFVVGNIGTPYT---TAVEKMTDNTITVAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L  I       RP ++ I    P HL+    +E   +AK  I +   +     LN
Sbjct: 165 MSSFQLESI----VDFRPRVSAILNFTPDHLNRHHTMEAYVNAKKNIAKNQTEDDYCILN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285
           Y+D        +  A     +  F   +       +     E+  +     G    + H 
Sbjct: 221 YEDRLTREFGEEIKA----NVLYFSSQRK-----LEEGIYLEEGNIIYNYGGVKETICHV 271

Query: 286 ---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H  +N++    + ++    VD   +++  F   E    R      +   T  
Sbjct: 272 DELQILGTHNHENVMAACAMAAVYGVPVDVIRESVKAFKGVE---HRIEYVTEKKGVTYY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +    I  +       +   + + G   +  E ++  +    +      + 
Sbjct: 329 NDSKGTNPDAAIKGIQAM-------KRPTVLIGGGYDKGSEYTEWINSFDGK------VK 375

Query: 403 HVWLSGFHVLAL-KDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
            + L G     +  DA       + + ++ +   L        G+ V++    +S     
Sbjct: 376 KLILLGDTKEKIAADAEKCGFKDYMFVDSFEEAVLTAAKIAESGEAVLLSPACASWDMFP 435

Query: 453 ----NSCGFYRLINLL 464
                   F  ++N L
Sbjct: 436 SYEVRGEKFKEIVNSL 451


>gi|297161285|gb|ADI10997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           bingchenggensis BCW-1]
          Length = 479

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 104/370 (28%), Gaps = 44/370 (11%)

Query: 96  NKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR       +A+TG+ GKTTT  ML   L +     A +G+    +   L +
Sbjct: 102 GDVELAWRLRGADAPPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIGVSL---LDV 158

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D    EL    L         +R H   +  +AP HL     +   A+ K  I
Sbjct: 159 VLGDEPYDVLAVELSSYQL----HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRI 214

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           +EG         N  D   E L   +          F        QL   +         
Sbjct: 215 YEG--NQVACVYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFV 272

Query: 274 VQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              Q ++ E       +    H   N L    +              L  F P      R
Sbjct: 273 ANRQKQAQELAEVSDVNPPAPHNIANALAAAALARAFGVPPTAVRDGLRAFRPDP---HR 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +      +D+S   N  + +A++              I  +      G       
Sbjct: 330 VEHVADVAGVAYVDDSKATNTHAAQASLDSFEH---------IVWIAGGLAKGATFDEL- 379

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD----------GLFLFIQS 439
                V S   +  V L G     + +AL R  H      +D                  
Sbjct: 380 ----VVASAKRLRGVVLIGADRALIGEALAR--HAADVPVVDLDRTDTGAMAAAVREAAR 433

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 434 LARPGDTVLL 443


>gi|124268381|ref|YP_001022385.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124261156|gb|ABM96150.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 449

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 126/375 (33%), Gaps = 30/375 (8%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A+ G+ GKTTT  ML   L + ++     G     +     ++    
Sbjct: 94  WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWILENNERR---PGFLVGGVPQNFEVSARLG 150

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +    + E            +  V  RP  AV+  +   H   F+ +  I +    +   
Sbjct: 151 EGQPFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLAAIETQFHHLLRT 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G + +N  +     +  +        +  FG   +    +  ++   E    +V  
Sbjct: 211 VPASGRVIVNAREESLARVLERG---CWSDVQRFGVRGD----VPGFRARGEPHSFDVLK 263

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G  +  V    +G H   N L  +     +      A +AL+ F   +   +R      
Sbjct: 264 SGVQVGRVEWALLGEHNQLNALAAIAAAEHVGVAPADAARALAGFANVK---RRLELRGE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + D+ +  +P +M+  I  L      GE R +AV     E    +       A++
Sbjct: 321 VRGIKVYDD-FAHHPTAMRTTIDGLR--RRIGEQRILAVF----EPRSNTMKLGAMKAQL 373

Query: 396 ---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-- 450
              L   +++     G    A +   P        +++D L   +  +   GD V+    
Sbjct: 374 PWALEEADLAFCHSGGLGWNAGEALAPLGDRAVVGDSIDALVQRVVQAARSGDHVLCMSN 433

Query: 451 SS-NSCGFYRLINLL 464
            S       +L+  L
Sbjct: 434 GSFGGIH-DKLLAAL 447


>gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 521

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 125/384 (32%), Gaps = 50/384 (13%)

Query: 24  QGFVNGISIDSRSIAPQE-AFF--AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              V  I+ D+R + P    F     K    DG D       KG    V  T+      +
Sbjct: 43  NEPVGSITYDTRKVEPGSMLFVKGRFKPEFLDGID------GKGLAAYVAETEYADRTKA 96

Query: 81  LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
           +      V+DV  A++ L+ A     +++ T+I ITG+ GKTTT  +    L+       
Sbjct: 97  IG---IIVEDVHKAMSLLSAAFYGMPQNELTVIGITGTKGKTTTAYLAHAILNEYSHGRC 153

Query: 138 ACIGSYNNHIGVPLTLA------------RMPVDV-----DFGIFELGMSHLGEIRFLTH 180
           A   S N  +     LA            RM  +       + + E+        R   H
Sbjct: 154 ALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNR--VH 211

Query: 181 LVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +   +     I+P H+S+      E+    K  +      + ++ L  D    +LL   
Sbjct: 212 GLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRRLIAN---SRSLVLGADCDHRDLLMQD 268

Query: 239 SHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
           +   GIK +  F     A       Q+        ++   V + G  +  +     G   
Sbjct: 269 AADAGIK-VTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFN 327

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    + I             A        GR +R +     G   L+   +  N  S
Sbjct: 328 VTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGRMERVK----AGDGLLVYIDFAHNYLS 383

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +K+ +  + +       R   V G
Sbjct: 384 VKSLVDEMVRTYGERRPRITLVSG 407


>gi|222474899|ref|YP_002563314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Florida]
 gi|255002871|ref|ZP_05277835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Puerto Rico]
 gi|222419035|gb|ACM49058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Florida]
          Length = 454

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 116/350 (33%), Gaps = 45/350 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A +I +TG+ GK+TT E++   L+         G+          +  +P      
Sbjct: 107 RSRPARLIGVTGTNGKSTTVELIGWILNRAGIDSETGGNIGKG------VLSLPQGKAAY 160

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    L  +R     V   + VI  I P HL  +S + +  +AK  I   LE +  +
Sbjct: 161 ILELSSYQLELMR----GVNLDVGVILNITPNHLDVYSNMADYIAAKGRI---LEFSNLL 213

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N  DS    L      +G    +S GK       +   +   +    E+         
Sbjct: 214 VANCGDSNTAHL---CENVGNMVEFSCGKKLARGVSVLDGRIYFQGRVAEI--------G 262

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                    A+N+  +  +   L    +  + ++  F    G   R +        T ++
Sbjct: 263 GLKIDSASNAENIAASYAVAKSLGVSDEVIMASIREF---PGLRHRNQVVAEVANVTFVN 319

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S     AS+  A+     +     G+              S+   I+    L    I  
Sbjct: 320 DSKATTAASVAKALVSRENVYWIAGGK--------------SKDGGIEPILSLYANRIRK 365

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDG--DVVVV 449
            +L G        +L R+   HV   +  + + +    ++  G    V++
Sbjct: 366 AFLVGEAADMFAVSLQRARVEHVMCYDVYNAVQIAFAEAIASGTKATVLL 415


>gi|58697604|ref|ZP_00372812.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535891|gb|EAL59670.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 250

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 96/269 (35%), Gaps = 31/269 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++GS GKTTT  M+               + +  + V   L     +   G  ++ +
Sbjct: 1   MIAVSGSSGKTTTTAMIASIFDH--------SNIDATVIVGGILNSYQSNSRLGKSDIFL 52

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       +  +I VIT+I   H+ ++   ++I  A ++      K     L  D 
Sbjct: 53  IEADESDGTMLKIPANITVITSINDDHMDHYGTFDDIKHAFSQFIN---KADFAILP-DS 108

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHH 286
                  + S   G          ++ + +    KQ +     +V +         V+ +
Sbjct: 109 VGINYDASNSMMFGF---------ESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVLSN 159

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG H   N L  + +   L        K L  F       +R+    +     LI++ Y
Sbjct: 160 TIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVA---RRFSLIADIKGVKLIED-Y 215

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375
             +P  + A ++    I+   +G+ I ++
Sbjct: 216 AHHPNEIYATLTAARSIT---KGKVIGII 241


>gi|149193790|ref|ZP_01870888.1| UDP-N-acetylmuramate--L-alanine ligase [Caminibacter mediatlanticus
           TB-2]
 gi|149135743|gb|EDM24221.1| UDP-N-acetylmuramate--L-alanine ligase [Caminibacter mediatlanticus
           TB-2]
          Length = 436

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 32/267 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +I++ G+ GK+TT  +L+  L +       IG+ +             VD D  +FE
Sbjct: 101 DKKVISVCGAHGKSTTTAILSSILQNA---SCLIGAESKEFKSNAR----YVDSDLMVFE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +        P+IAV+T   P H+  ++   ++    +   E L+K     +N
Sbjct: 154 ADESDGSFVD-----SNPYIAVVTNTEPEHMEFYNHDLDLFY--SHYEEFLKKAKIRVVN 206

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD F + L      + +K           D +  +++          + +G   EV   
Sbjct: 207 GDDEFIKKLNIPMKKVYLK-----------DAKNIRFEIRDNNPKTIFEYKGYEFEVY-- 253

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           G G H+A + L+ +        D +            +G  KR+    N+  F LID+ Y
Sbjct: 254 GFGEHLALDALLAIEAAKEF-LDYNEI---SKNIKNYKGIKKRFDILQNESSFVLIDD-Y 308

Query: 347 NANPASMKAAISVLSQISPHGEGRRIA 373
             +P  +KA +      +      +I 
Sbjct: 309 GHHPTEIKATLHSAINFAKLKGIEKII 335


>gi|15836881|ref|NP_297569.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|9105095|gb|AAF83089.1|AE003881_2 UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa 9a5c]
          Length = 471

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 137/422 (32%), Gaps = 41/422 (9%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           ++   +      VVV      S G+ ++                +A R+      +A+ G
Sbjct: 54  YLPEHIAADCAEVVVG--NALSRGNAAVEALLDSGCRYISGPQWLAERVLPGRDTLAVAG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHI--------------GVPLTLARMPVDV 160
           + GKTTT  +L   L +  +     IG    +                 PL    +   V
Sbjct: 112 THGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEVSTAV 171

Query: 161 DFG-IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP +A++  +   H   F  +  I      +   +
Sbjct: 172 RPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHLVRTI 231

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + +N +D   + L           +  FG      +  R     ++ S   V  +
Sbjct: 232 PGRGRLIVNGED---QRLAEVLAMGCWTPVERFGFDPEFHWSARLI--AADGSRFSVWHE 286

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G  + +V    +G H   N+L  L     +       I +L+ F   +   +R  C   +
Sbjct: 287 GCEVGQVRWSLLGRHNVLNVLAALAAAHAVGVAPAAVIPSLTQFRSVK---RRLECLGER 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC----EMGELSQSFHIDL 392
           G  T+ D+ +  +P ++    + L  +  +    RI V  +M      +G  +Q+    L
Sbjct: 344 GAVTVYDD-FAHHPTAIA---TTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSL 399

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               ++  + H  L       +         VH     +GL   +   +   D VV   S
Sbjct: 400 QAADTVVFLDHPGLVWNAAGVVAQM---HGQVHVVHDTEGLLSMLNEVVHASDHVVFM-S 455

Query: 453 NS 454
           N 
Sbjct: 456 NG 457


>gi|283954617|ref|ZP_06372135.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793809|gb|EFC32560.1| UDP-N-acetylmuramate--alanine ligase [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 431

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 131/343 (38%), Gaps = 44/343 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +  L++      +     + A+ G+ GK+TT  +L   +         IG+     G  +
Sbjct: 85  IKCLSRKEALPLILEDKRVFAVAGAHGKSTTSSILASLIDDA---SVIIGAILKEFGSNM 141

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
               +  +    +FE   S    +        P++A++T     HL ++    E++    
Sbjct: 142 ----IYKESQNLVFEADESDSSFL-----NSNPYLAIVTNAEAEHLDHYGN--EVSKLHH 190

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L       +N +D F      KS+   +  +Y     KN    +  +K     + 
Sbjct: 191 AYTEFLNTAKIRVINAEDEFL-----KSYQNEVIKLYPSKDIKNCTMFIENFKPF---TS 242

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E++  G   E    G+GYH+A +  +++        D++T     +     +G  KR+ 
Sbjct: 243 FELKDWG---EFRVFGMGYHLALDASLSILAALNF-LDIETI---RTRLKNYQGIKKRFD 295

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGEL 384
                    LID+ Y  +P  +KA +S   + +  G  ++I  + +          +GE 
Sbjct: 296 ILYADENLVLIDD-YGHHPTEIKATLSAAQEYARLGGYKKITAIFEPHRYTRLAANLGEF 354

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPRSIHVH 425
           +++F     E +    I  V+ +G   +   LK   P+++ V 
Sbjct: 355 AKTF-----EGVDELIILPVYAAGEEPIDLDLKAVFPKALFVE 392


>gi|145636410|ref|ZP_01792078.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittHH]
 gi|145270235|gb|EDK10170.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittHH]
          Length = 389

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 144/408 (35%), Gaps = 32/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 1   MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 60

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L   P    + + E            +  +   P 
Sbjct: 61  ILEQNGLKPGFLIGGIAGNFGISARLGTSP----YFVIEADEYDTAFFDKRSKFIHYNPR 116

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 117 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 172

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 173 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 229

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 230 HAGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-K 284

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             G  R +AVL    E    +     H  D+A  L   +   +         + D   + 
Sbjct: 285 VGGGVRILAVL----EPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQC 340

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
           +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 341 VQPAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 387


>gi|15965931|ref|NP_386284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           meliloti 1021]
 gi|307308241|ref|ZP_07587950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti BL225C]
 gi|307319708|ref|ZP_07599133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti AK83]
 gi|7387920|sp|Q52953|MURD_RHIME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15075200|emb|CAC46757.1| Probable UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sinorhizobium meliloti 1021]
 gi|306894639|gb|EFN25400.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti AK83]
 gi|306901239|gb|EFN31845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti BL225C]
          Length = 463

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 99/305 (32%), Gaps = 31/305 (10%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           ++G   D H F    +  G  L        +   +    V  + DV   + +    A   
Sbjct: 58  LRGA--DWHAFAAFVLSPGVPLT-HPKPHWSVDLAHQAGVEIIGDVELFVRERRKHA--- 111

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L +  +     G+    IG  +     P    F + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILRTSGRDTQLGGN----IGTAVLTLDPPKAGRFYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +GT  +
Sbjct: 168 ECSSYQID----LAPTLDPTAGILLNLTPDHLDRHGTMQHYADIKERLVAG---SGTAVV 220

Query: 226 NYDDSFFELLKAKSHALGIKTI-----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             DDS   L+  +    G K +     +   +   A+       Q    S          
Sbjct: 221 GVDDSLSSLIADRVERAGTKVVRISRRHPLAEGIYAEGSALMRAQDGASSLFT------D 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +  +    G H AQN    +     +       +  L  F    G   R +    +G   
Sbjct: 275 LAGIQTLRGGHNAQNAAAAIAACLAVGISGKDIVDGLRSF---PGLKHRMQPVAKKGEVV 331

Query: 341 LIDES 345
            +++S
Sbjct: 332 FVNDS 336


>gi|284047777|ref|YP_003398116.1| FolC bifunctional protein [Acidaminococcus fermentans DSM 20731]
 gi|283951998|gb|ADB46801.1| FolC bifunctional protein [Acidaminococcus fermentans DSM 20731]
          Length = 426

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 128/403 (31%), Gaps = 77/403 (19%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-------------------IGSY 143
               K   I +TG+ GK +    L   L    K                       I + 
Sbjct: 34  HPERKIRTIHVTGTNGKGSVTTFLANMLQQAGKKVGSYTSPHFVRYNERICLNGEEISNE 93

Query: 144 NNHIGVPLTLARMP--------------------------VDVDFGIFELGMSHLGEIRF 177
           +       T A +                             VD+ + E+GM  L +   
Sbjct: 94  DFAAVTERTKAALDRFLAEGGEQPTQFEFITAMAFLYFAEKQVDYAVIEVGMGGLWD--- 150

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            T+++ P ++VIT +   H       IE IA+ KA I    +    +    +    E+++
Sbjct: 151 STNIITPEVSVITNVTLEHTDRLGKTIEAIAAQKAGII---KPGVPVVTEAEGKALEVIR 207

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             + A     +Y +G     DF   +     +      ++  K MEV  H  G H   N 
Sbjct: 208 GTAEASHA-PLYVYGD----DFSTEELTSSMDAQTFLYRMGEKEMEVTIHLPGEHQILNG 262

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L    IL    D +I   ++    +      R         +I +    NP+ +   
Sbjct: 263 AAALAAAEILREK-DGSIDEAAMLRGMDAARWPGRLERIHRNPDIILDG-AHNPSGVTVL 320

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVL 412
              L +  P    RRI V G M      +      ++E+L       ++      G    
Sbjct: 321 RKALDEYYP--GARRIYVFGMM------ADKDVSQVSEIL-FRPEDTIYTVLAHEGDRSE 371

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKSS 452
              + L R +H +    MD L    + ++      DVV+V  S
Sbjct: 372 K-PEKLARRLHKNAVP-MDELAAAYRRAVQEAGPEDVVIVCGS 412


>gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 483

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 100/360 (27%), Gaps = 42/360 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R       +A+TG+ GKTTT  ML   L +     A +G+    +   L +       D 
Sbjct: 115 RGEDAPPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIGVSL---LDIVLGDEPYDV 171

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L         +R H   +  +AP HL     +   A+ K  I+EG      
Sbjct: 172 LAVELSSYQL----HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYEG--NQVA 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N  D   E L   +          F        QL   +            Q ++ E
Sbjct: 226 CVYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVADRQKQAQE 285

Query: 283 ----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  +    H   N L    +              L  F P      R     +   
Sbjct: 286 LAEVSDVNPPAPHNIANALAAAALARAFGVPPKAVRDGLRAFRPDP---HRVEHVADVDG 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              ID+S   N  + +A++              I  +      G       +  AE L  
Sbjct: 343 VAYIDDSKATNTHAAEASLGAYEH---------IVWIAGGLAKGATFDELVLTAAERLR- 392

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVV 448
                V L G     +++AL R  H      +D                      GD V+
Sbjct: 393 ----GVVLIGADRALIREALAR--HAADVPVVDLDRTDTGAMAAAVREAARLARPGDTVL 446


>gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
          Length = 515

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 130/417 (31%), Gaps = 50/417 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 I+ D+R + P       KG  +   D++    Q G    +  T+          
Sbjct: 38  DEPFTAITYDTRKVTPGTL-LCCKG-RFKA-DYLTDIDQAGLAAYMAETEYS---AVTRA 91

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACI 140
           P   V+D   A++ L+     R + + T+I ITG+ GKTTT   +   L++      A  
Sbjct: 92  PGLIVNDARKAMSLLSAEFYGRPQDELTVIGITGTKGKTTTAYFVQAVLNAYSGGRAALF 151

Query: 141 GSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVR-------------PH 185
            S +N +             +       +  +    +R+L   V                
Sbjct: 152 SSVDNCLDGHTYAESDLTTPESMDAFRMMREAANNGMRYLVMEVSSQAYKVERVYGLTFD 211

Query: 186 IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 I+P H+S       E+    K +I        T+ L  D    +L++  + A  
Sbjct: 212 AGAFLNISPDHISAIEHPTFEDYLYCKRQITHNCR---TLVLGADCDHADLIRQDAQASN 268

Query: 244 IKTIYSF------GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
           +  + +F      G   +ADF           S    Q QGK++ +      G   A N 
Sbjct: 269 V-PVTTFALHAADGHGTHADFVA----LPDASSGYLFQEQGKAIGDFSLELEGEFNAANA 323

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + +   +     +            GR + Y          +    Y  N  S K  
Sbjct: 324 AAAIALSRAVGVPAGSEAFRALEHVHIPGRMEHYES-----GNMVAYVDYAHNYVSTKTL 378

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
              ++        R + V G    +G+ +      + +    Y    + L+    + 
Sbjct: 379 AEFVTHKYADRNPRVVVVTGS---VGDKAVDRREGIIKGAQDY-ADRIILTAEDTVH 431


>gi|330823366|ref|YP_004386669.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|329308738|gb|AEB83153.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 863

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 107/362 (29%), Gaps = 51/362 (14%)

Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           T      A+++    Y     I S +         A    + D  + E      G +R  
Sbjct: 493 TAHGWRTAMTNTDGVYVNGRQIDSGDCSGPRSARNALAHPEADAAVLECA--RGGLLREG 550

Query: 179 THLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               R  +AV+T +    HL       +E++A  K  I + + + G   LN  D     +
Sbjct: 551 LGFDRCQVAVVTNVGEGDHLGLNFIHTVEDVAVLKRVIVQNVAQDGYAVLNAADPHVAAM 610

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-------------SEQSWMEVQLQGKSME 282
                      +  F   ++         Q              +E SW E  +  + + 
Sbjct: 611 ATSCPG----KVIFFAADRHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRE-SVPLREIP 665

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +   G      +N +  +     L     T  + L+ F             ++    TLI
Sbjct: 666 ITRGGAIGFQVENAMAAIAATWGLGLPWQTIRRGLAGFVNDSDNAPGRFNVMDYRGATLI 725

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401
            + Y  NP +++A +  +  I        I+  GD  +          D+ E        
Sbjct: 726 AD-YGHNPDAIRALVQAVDAIPAKQRSVVISGAGDRRD---------QDIIEQTRTLGAA 775

Query: 402 -SHVWLS----------GFHVLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDVV 447
              V L           G  +  LK  L  +    Y   + G           L  GD+ 
Sbjct: 776 FDDVVLYQDACQRGRADGEVLALLKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLC 835

Query: 448 VV 449
           +V
Sbjct: 836 LV 837


>gi|166363698|ref|YP_001655971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Microcystis
           aeruginosa NIES-843]
 gi|189082911|sp|B0JRM9|MURD_MICAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166086071|dbj|BAG00779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcystis
           aeruginosa NIES-843]
          Length = 449

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 129/376 (34%), Gaps = 33/376 (8%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                I +   +  +  + +L +A R    +  + ITG+ GKTTT  +            
Sbjct: 76  PWDAPILITAREKGIDTIGELELAWRYLQSSPWLGITGTNGKTTTTALCAAIFQKAGLNA 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+          LA      D+ I E+    +   R L+    P I + TT  P HL
Sbjct: 136 PSCGNIG---YAACELALKADKYDWIIAEISSYQIESSRDLS----PKIGIWTTFTPDHL 188

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           S    +E     KA +   L+++    LN DD +   L+    +   +  ++  + K A 
Sbjct: 189 SRHQTLENYYQIKASL---LQRSDRQILNGDDPY---LRQIGVSQWQQAYWTSVQGKAAL 242

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                     + +W+    +  +   +   +G H  QN+LM +    +   +     +A+
Sbjct: 243 LGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAI 302

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F    G   R            I++S   N  +    +  +   +       I + G 
Sbjct: 303 ATF---PGVAHRLEYVCTYKGLDFINDSKATNYDAAAVGLQSVPSPA-------ILIAGG 352

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
             + G+        +AE+     ++ V L G         L  + +  Y   ETMD    
Sbjct: 353 EAKAGDDRAW----IAEI--KAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQ 406

Query: 436 FIQSS--LVDGDVVVV 449
                    +  VV++
Sbjct: 407 RAAELGPAKEAKVVLL 422


>gi|218249929|ref|YP_002375093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226321891|ref|ZP_03797417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
 gi|226711886|sp|B7J2E8|MURD_BORBZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218165117|gb|ACK75178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226233080|gb|EEH31833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
          Length = 451

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++ +     S       +  F +    DF  +    C+E    +V   G  +    +
Sbjct: 221 QDQAYCKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNGNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++   + LS F   E R +  +   N       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNRTGQILSNFKGIEHRLEFVKSVQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|168333725|ref|ZP_02691978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 456

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 107/332 (32%), Gaps = 40/332 (12%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++     +       +G+        +        V   I EL    L  I  L+     
Sbjct: 123 LVGEIFKAYNPKTFVVGNIGCAFSEEVQDITADSVV---IAELSSFQLETIETLS----C 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I  I  I P HL+    +E   +AK  IFE   K   + LN +D+    L  K+    +
Sbjct: 176 QICSILNITPDHLNRHGTMENYMAAKYRIFENGGKNVKVILNKEDAELAKLIGKTGKTEL 235

Query: 245 KTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             ++S  +S      L            +++   +         H +G H  +N L  + 
Sbjct: 236 --LFSSKESVEKGVYLENGALVDNTLGDNFVICNIDE------LHILGVHNYENALAAIL 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +      SV     G   R             ++S   N   + AA+  L 
Sbjct: 288 MARAYGVPREII---RSVLLDFRGVAHRIEYVTTVSDVKFYNDSKATN---VGAAVPGLL 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLALKDALP 419
            +       +I ++G            HI+  E + L+   ++ +++ G     + +   
Sbjct: 342 AMQS-----KIRLIGGGL-------DKHIEFDEWVELFEGRVAKLYIIGETTNQIIETCK 389

Query: 420 RSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
           +    +Y   ET +       +    G+ V++
Sbjct: 390 KHGFHNYEAFETFEEAIKAAYNEAKRGEXVLL 421


>gi|326531704|dbj|BAJ97856.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 95/278 (34%), Gaps = 27/278 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   + +     V  +G+  D+  +A  + F  + G    G   +  A +
Sbjct: 222 MTLAELLDESKLVPVAVTGDQDVALSGVQSDATLVAAGDLFVCV-GES--GLAGLTEADK 278

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKT 120
           +GA  VV + D+          +  VDD+  AL  L      R      +I ITG+ G T
Sbjct: 279 RGAVAVVADQDVDIEGTLACRALVIVDDITAALRVLPACLYGRPSKDMAVIGITGTDGVT 338

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFELGMSHLGEIRFL 178
           T   ++     ++      +G    +      L   P        + +L  + L      
Sbjct: 339 TASHLVKAMYEAMGVRTGMVGVLGAYAFGTNKLDAQPAASGDSMAVQKLMATMLHNGAEA 398

Query: 179 THL---------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG 221
             L               +   IAV+T +   +L      E   S+ A +F  +   +  
Sbjct: 399 VVLEKTTDEMLPSGVDSEIDYDIAVLTNVRHGNLEASMTYEGYMSSMASLFSRMVDPERH 458

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +N DD       A+         YSF ++K AD  
Sbjct: 459 RKVVNIDDPSAPFFAAQGGHGVPVVTYSF-ENKKADAH 495


>gi|295394737|ref|ZP_06804952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972333|gb|EFG48193.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 501

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 109/366 (29%), Gaps = 50/366 (13%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  + A  + ITG+ GKTT   ML     +        G+    IG PL  A +    + 
Sbjct: 140 RGTNAAPWLVITGTNGKTTATSMLASMFRAAGVNAVACGN----IGSPLLEAVLDPAAEV 195

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L         +  H A +  +AP H+      E   + KA ++  + K   
Sbjct: 196 LAIELASFQL----HWQFSMCAHSAAVLNLAPDHVDWHGSYENYVADKARVYSNVMK--A 249

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--------DFQL-RKWKQCSEQSWME 273
              N +D     L   +  +       FG             D  + R +      S +E
Sbjct: 250 CVYNREDLATRKLVEDAEVVAGARAVGFGLGVPGPGEFGLVEDILVDRAFAPNRYSSALE 309

Query: 274 V-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +  L   +          H   N L    +   +          L  F        R R 
Sbjct: 310 LASLDDVAKAAGTTSAPDHYVMNALAAAALARSIDLPPVAVRDGLRSF---APGDHRMRV 366

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T +++S   NP +  AA+     I     G                  +H D+
Sbjct: 367 VRTLDDITWVNDSKATNPHAASAALGSFDPIVWIAGGL------------PKGADYH-DI 413

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---------MDGLFLFIQSSLVD 443
            E      +  V + G    AL  AL  S    + +T         M+      +     
Sbjct: 414 VEGFKDR-LRSVVVIGEDDSALSSALEAS----HVDTIRIEPGPRVMERAVNAARELAQP 468

Query: 444 GDVVVV 449
           GD V++
Sbjct: 469 GDTVLL 474


>gi|159027413|emb|CAO86897.1| murD [Microcystis aeruginosa PCC 7806]
          Length = 449

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 128/376 (34%), Gaps = 33/376 (8%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                I +   +  +  + +L +A R    +  + ITG+ GKTTT  +            
Sbjct: 76  PWDAPILITAREKGIETIGELELAWRYLQSSPWLGITGTNGKTTTTALCAAIFQKAGLNA 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+          LA      D+ I E+    +   R L     P I + TT  P HL
Sbjct: 136 PSCGNIG---YAACELALKADKYDWIIAEISSYQIESSRDLA----PKIGIWTTFTPDHL 188

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           S    +E     KA +   L+++    LN DD +   L+    +   +  ++  + K A 
Sbjct: 189 SRHQTLENYYQIKASL---LQRSDRQILNGDDPY---LRQIGVSQWQQAYWTSVQGKEAL 242

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                     + +W+    +  +   +   +G H  QN+LM +    +   +     +A+
Sbjct: 243 LGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAI 302

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F    G   R            I++S   N  +    +  +   +       I + G 
Sbjct: 303 ATF---PGVAHRLEYICTYKGLDFINDSKATNYDAAAVGLQSVPSPA-------ILIAGG 352

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
             + G+        +AE+     ++ V L G         L  + +  Y   ETMD    
Sbjct: 353 EAKAGDDRAW----IAEI--KAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQ 406

Query: 436 FIQS--SLVDGDVVVV 449
                    +  VV++
Sbjct: 407 RAAELGLAKEAKVVLL 422


>gi|126665201|ref|ZP_01736184.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Marinobacter sp. ELB17]
 gi|126630571|gb|EBA01186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Marinobacter sp. ELB17]
          Length = 486

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 95/298 (31%), Gaps = 13/298 (4%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +      ++        +A  +  +  ++A+ G+ GKTTT  ML  
Sbjct: 86  LVLIGNAMSRGNTEVEYVLNRNIPYMSGPEWLAREVLHQRWVLAVAGTHGKTTTTAMLLW 145

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPH 185
            L          +G     + V   L       DF + E            +  V  RP 
Sbjct: 146 ILEQAGFDAGYLVGGVPKDLPVSARLG----SSDFFVIEADEYDSAFFDKRSKFVHYRPR 201

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  +   H   F  +E I      +   +   G I     DS  +   A       +
Sbjct: 202 TLILNNLEFDHADIFDNVEAIERQFHHLIRTVPSQGLILRPTLDSHLDNAIALG-CWTPQ 260

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVS 304
              S G   N+    R      + S   V    + +  V     G H  +N L  +    
Sbjct: 261 QTLSIGGEANSPSHWRAELLSDDGSHFMVLHHEQPVTAVKWAQTGLHNVRNALSAIAAAR 320

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +    D AI AL  F   +   +R     +     + D+ +  +P ++   +  L +
Sbjct: 321 HVGVTPDYAISALCRFSGVK---RRMELLADINGVRVYDD-FAHHPTAIATTLDGLRK 374


>gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 11/134 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DLL  +    I    +  ++ ++IDSR++ P   F A +G    G DF   A+ +GA
Sbjct: 12  SLQDLLAGLA--EIDAAQERPISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQALAQGA 69

Query: 66  GLVVV-------NTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGS 116
             +         N         L IP+  V+ +  L +L      A      T+I +TG+
Sbjct: 70  VAIAWEPNGPEVNRQAERLATQLPIPLIRVEGLTRLASLIAARFFAYPSRSMTVIGVTGT 129

Query: 117 VGKTTTKEMLTIAL 130
            GKT+   +L  AL
Sbjct: 130 NGKTSVSHLLAQAL 143


>gi|158421725|ref|YP_001523017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azorhizobium
           caulinodans ORS 571]
 gi|158328614|dbj|BAF86099.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase precursor
           [Azorhizobium caulinodans ORS 571]
          Length = 536

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 93/272 (34%), Gaps = 22/272 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L+  A   AITG+ GK+TT  +L+  +    +     G+    I                
Sbjct: 181 LKPTAPFAAITGTNGKSTTTALLSHLMKVGGRDVQMGGNIGTAILS----LEPFKAGRVH 236

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     +     L   + P + +   + P H+      E   + K  +  G++  GT 
Sbjct: 237 VVECSSYQID----LAPGLDPSVGIHLNLTPDHIDRHGTFEHYGAVKERLIAGVQPGGTA 292

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSME 282
            +  DD+    +  ++ A GI  +    K   AD          +   + V  +G +   
Sbjct: 293 VVGVDDAPSAAIADRAEAAGIHVVRISVKQPLAD------GIWLDGETLVVSEKGAEVFR 346

Query: 283 VVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +   GI    G H AQN    +     L    +     +  F    G   R      +G 
Sbjct: 347 LPLTGIGSLRGAHNAQNAAAAMAAARGLGLAYEVIAVGMQRF---PGLAHRMEQVGTRGK 403

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              +++S   N  + + A++  S +     G+
Sbjct: 404 VLFVNDSKATNADAAERALASFSDVFWIAGGK 435


>gi|225548647|ref|ZP_03769694.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
 gi|225370677|gb|EEH00113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
          Length = 451

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 121/344 (35%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++ +     S       +  F +    DF  +    C+E    +V   G  +    +
Sbjct: 221 QDQAYCKYF---SKFKSKVRVILFSEFNPCDFD-QNIFYCNEG---KVYFNGNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++       + +  +G   R     +       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNR---TGQILNNFKGIEHRLEFVKSVQNVMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|330959912|gb|EGH60172.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 449

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 122/370 (32%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     I     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLGETPFFVVEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +     +        ++T       ++  +Q R      + S  EV  +G+    V   
Sbjct: 222 TEPALTRVIKMGCWTPVQT-----TGQDGQWQARLL--SEDGSRFEVLFEGELQGAVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       ++ALS F   +   +R     +    T+ D+ +
Sbjct: 275 MTGLHNVANALATLAAARHVGVVPLLGVQALSAFKSVK---RRMEKVADVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IAV+    E    S     H D     S+     V
Sbjct: 331 AHHPTAIATTLDGLR--KKVGDAPIIAVI----EPRSNSMKLGAHRD-GLPESVQQADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A       S+ +   ++++ +   +Q     G  +V+  SN  GF  
Sbjct: 384 VWYAPPNLGWDLAATVAG--GSVPLAVCDSLEAIIAHVQRLAQPGTHIVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALK 449


>gi|330505044|ref|YP_004381913.1| UDP-N-acetylmuramate [Pseudomonas mendocina NK-01]
 gi|328919330|gb|AEB60161.1| UDP-N-acetylmuramate [Pseudomonas mendocina NK-01]
          Length = 451

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 119/353 (33%), Gaps = 29/353 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT++  ML   L          IG    + G+   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTSSSSMLAWVLEHAGMAPGFLIGGVPQNFGISARLG----DTPFFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I      +   +   G +   
Sbjct: 161 EYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRIIPSEGLVIHP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVH 285
             ++    +        ++T       +   +Q R     ++ S  EV   GK    V  
Sbjct: 221 ASETALARVIEMGCWTPVQT-----TGEGGQWQARLL--SADGSRFEVSFDGKVEGTVEW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  L     +       I+AL  F   +   +R          T+ D+ 
Sbjct: 274 NLTGQHNVANALAVLAAARHVGVVPALGIEALGKFINAK---RRMEKVAEVKGVTVFDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++   +  L +     + + IAV+    E    S     H D LAE     +  
Sbjct: 330 FAHHPTAIATTLDGLRK-RVGDDTQVIAVI----EPRSNSMKLGAHRDGLAESAEQADAV 384

Query: 403 HVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +        L   + ++ +     ++++ +   +++    G  VV+  SN 
Sbjct: 385 FWYAPPNLGWDLAATVAQARNPTRVCDSLESIIDGVKALARPGTQVVIM-SNG 436


>gi|315640777|ref|ZP_07895879.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus italicus DSM
           15952]
 gi|315483532|gb|EFU74026.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus italicus DSM
           15952]
          Length = 232

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            IY +G ++N D Q R  ++ +  S  +V   GK +   V    G H   N L  +    
Sbjct: 9   PIYYYGINENDDVQARNIERTTTGSAFDVYFHGKLVGHFVLPAFGQHNINNALGVIATAY 68

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-- 362
           +   D++   + +  F   + R    + A       +I + Y  +PA ++A I    Q  
Sbjct: 69  LEDFDMEEVAREMQTFAGVKRRFTEKKVADM-----IIVDDYAHHPAEIRATIDGARQKY 123

Query: 363 --------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R IA+L D  +  +L+   +  L ++      +        +  L
Sbjct: 124 PNQKIIAVFQPHTFTRTIALLDDFAQALDLADEVY--LCDIFGSARETK---GNVKIEDL 178

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC-GFYRLINLLLEE 467
              + +   V   + +  L  +         VV+   +     F R    LL +
Sbjct: 179 GAKIHKGGTVLSEDNVSPLLDY------KDAVVIFMGAGDVQKFERAYEELLSK 226


>gi|313888161|ref|ZP_07821835.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845851|gb|EFR33238.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 432

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 83/412 (20%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--------------------- 136
           L           +I + G+ GK +T   +   L    K                      
Sbjct: 29  LEKLGSPHKNLKVIHVAGTNGKGSTVNFIKDVLKEDYKVGSFVSPHLITYCDRIKIGDAE 88

Query: 137 -----YACIG-----------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
                +A IG                 +    + +   +      VD  I E+GM    +
Sbjct: 89  ISQADFAEIGEFIIEREKDIVEEYGDLNLFEFLTIMAIIYFEREGVDLAILEVGMGGRAD 148

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL-NYDDSFF 232
              +       I++IT+I+  H+      IEEIA AKA I +   + G +   N D    
Sbjct: 149 STNIFTNREKLISLITSISMDHMEYLGDTIEEIADAKAGIIQ---EGGLVVTTNMDPKIL 205

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +++ ++     +  Y+       D               +V+L     E     IG + 
Sbjct: 206 GVIEKEAKEKSAELFYT------KDLASEILNSDLRGIDFKVKLDDVEEEFHLTQIGDYQ 259

Query: 293 AQNMLMTLGIVSILT------ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +N    +  + +L         +D      +       +G+    + +     LI    
Sbjct: 260 VENAFGAIYALYLLNKRGILKISLDDIK---ARIKRSTWKGRMEIVSRD----PLIILDG 312

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N   +K  +  L           +++L D           H  + E ++ Y    V  
Sbjct: 313 AHNFDGIKRLVESLDNFKFKKLHLIMSILAD---------KEHKKMLEEIASY-TDEVVF 362

Query: 407 S------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                  G     L              T+D    + + S  +GD++++  S
Sbjct: 363 VNLDYKRGTSPDELSSEASEYGLKGQVMTIDEALAYYKKSYQEGDLILITGS 414


>gi|261492969|ref|ZP_05989512.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261311370|gb|EEY12530.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 454

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 131/399 (32%), Gaps = 37/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 66  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDKWVLAVSGTHGKTTTTGMLAW 125

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+       P    F + E            +  V   P 
Sbjct: 126 ILDQNGIDTGFLIGGVAGNFGISARAGNSP----FFVIEADEYDSAFFDKRSKFVHYTPK 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  +   H   F  ++ I      +   + ++G I     D   +      +   ++
Sbjct: 182 TLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGCILSAIADQNVQDTLKMGNYSQLQ 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I      +  ++  +     ++ S  EV  L  K  EV    IG H   N LM +    
Sbjct: 242 FI-----GEQNEWFAK--PLNADCSQFEVFHLGVKQGEVHWSIIGKHNMHNALMAIAAAH 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +V  A +AL  F       +R          T+ D+ +  +P +++A I  L    
Sbjct: 295 HAGVEVQGACEALGKFVNAN---RRLEVKGEVNGITVYDD-FAHHPTAIEATIDALRG-K 349

Query: 365 PHGEGRRIAVLG------DMC-EMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKD 416
                R +AVL        M     E++ S H   AE + +Y    + W        L  
Sbjct: 350 VGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHD--AEAVFVYQPDIIAWSVSEITNVLSQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   ++S  +D L   +       D ++V  SN  
Sbjct: 408 ------PAYWSANIDDLVDLVVKEAKPTDHILVM-SNGA 439


>gi|86358452|ref|YP_470344.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           etli CFN 42]
 gi|118595680|sp|Q2K6B9|MURD_RHIEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86282554|gb|ABC91617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CFN 42]
          Length = 470

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 102/303 (33%), Gaps = 22/303 (7%)

Query: 46  IKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAAR 103
           I+     G D+   A+     G+ + +     ++       V  V DV   + +    A 
Sbjct: 53  IRTEDLHGIDWSQQALFVLSPGVPLTHPKPHWTVDLARAAGVDIVGDVELFVRERRAHA- 111

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                  IAITG+ GK+TT  ++   L S        G+    IG  +     P    + 
Sbjct: 112 --PDCPFIAITGTNGKSTTTALIAHILKSAGYDTQLGGN----IGTAVLTLDPPKAGRYY 165

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     +     L   + P   ++  + P HL     ++  A  K  +  G   +   
Sbjct: 166 VVECSSYQID----LAPTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG---SDVA 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +  DDS   L+  +    G+K +  S   +  +       +    Q+     L    ++
Sbjct: 219 IVGIDDSHSALIADRVERAGVKVVRISRRNAVASGIYAEGIRLV--QAVGGAMLPFADLD 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H AQN    +     +    D     L+ F    G   R +    +G    +
Sbjct: 277 GIQTLRGSHNAQNAAAAVAACLAVGVSADAIRAGLASF---PGLKHRMQPVGKRGRVVFV 333

Query: 343 DES 345
           ++S
Sbjct: 334 NDS 336


>gi|15643003|ref|NP_228045.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
 gi|6919931|sp|Q9WY73|MURC_THEMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4980729|gb|AAD35322.1|AE001707_9 UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
          Length = 457

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 135/417 (32%), Gaps = 55/417 (13%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAAR--------LRSKATI 110
           G  + V ++        L I    V D     V   + ++ +  R         R K   
Sbjct: 45  GIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLKREKKEE 104

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            A+TG+ GKTTT  M+   L  ++K       +   I   L            ++EL   
Sbjct: 105 FAVTGTDGKTTTTAMVAHVLKHLRK---SPTVFLGGIMDSLEHGNYEKGNGPVVYEL--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              E         P+  +IT     HL N+   +    SA  +I      T  +    +D
Sbjct: 159 --DESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRN---TDLVVTFAED 213

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                L             +FG  K   + L        +    V+  GK   E+     
Sbjct: 214 ELTSHLGD----------VTFGVKKG-TYTLEMRSASRAEQKAMVEKNGKRYLELKLKVP 262

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYN 347
           G+H   N L  + +   L  D+   ++AL  F    G  +R+  A +     + + + Y 
Sbjct: 263 GFHNVLNALAVIALFDSLGYDLAPVLEALEEF---RGVHRRFSIAFHDPETNIYVIDDYA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVW 405
             P  ++  +    ++  +    +I V+        L +         ++     ++ V+
Sbjct: 320 HTPDEIRNLLQTAKEVFENE---KIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVY 376

Query: 406 LS------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +      G     + D+L       ++ E +  L   I  S+ +  V +   +   
Sbjct: 377 DAFEEKKNGISGKMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGDI 431


>gi|257462515|ref|ZP_05626927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D12]
 gi|317060170|ref|ZP_07924655.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           D12]
 gi|313685846|gb|EFS22681.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           D12]
          Length = 433

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 135/370 (36%), Gaps = 49/370 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D++  A   +    +   K  I+A+TG+ GKTTT   +   L+   K  A  G+      
Sbjct: 75  DEIEIAYQYMVKYNK---KINIVAVTGTNGKTTTTSKIAELLNFAGKKAAAAGNIGRSF- 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
               +       D+ + EL    L  +   T    P+I+++T + P HL+ ++ +E+  +
Sbjct: 131 --AEVLLSEEQYDYAVLELSSYQLENVYEFT----PYISMVTNLTPDHLTRYANLEDYYN 184

Query: 209 AKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K  I +  EK  + FL N D         K   L      S  + + AD  ++      
Sbjct: 185 TKFHICQNQEKENSFFLFNIDHEEVR----KRETLMKGRKISLSRKQEADTCVKDGN--- 237

Query: 268 EQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +  QG+ +  V      G H  +N L  +    +L  D              E 
Sbjct: 238 ------ILFQGEKVMSVSELSLKGSHNLENSLFIVTAGKLLGLDSKIIRDF---LRNTEP 288

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R       G    I++S   N  S K A+           G  I + G   +  +L+
Sbjct: 289 LEHRMERCFQYGKLQFINDSKGTNIDSAKFALEA-------YPGC-ILICGGFDKKVDLT 340

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441
                 LA+V+    +  V+L G     +K  L     ++  +H  +T++     ++   
Sbjct: 341 P-----LADVIVK-QVKEVYLIGVIADKIKALLVDRNYQAERIHSLDTIENSLRDMKQRF 394

Query: 442 VDGD--VVVV 449
              D  V+++
Sbjct: 395 TKEDQEVILL 404


>gi|332526636|ref|ZP_08402742.1| UDP-N-acetylmuramate [Rubrivivax benzoatilyticus JA2]
 gi|332110898|gb|EGJ11075.1| UDP-N-acetylmuramate [Rubrivivax benzoatilyticus JA2]
          Length = 452

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 119/347 (34%), Gaps = 23/347 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++A+ G+ GKTTT  ML   L          G     + +   ++       F + 
Sbjct: 101 FGRHVLAVAGTHGKTTTTSMLAWILEQAGLE---PGFLVGGVPLNFGVSARLGGGRFFVI 157

Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V  RP  A++  +   H   F  +  I +    +   +  +G +
Sbjct: 158 EADEYDTALFDKRSKFVHYRPRTAILNNLEHDHADIFPDLAAIETQFHHLVRTVPASGRL 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N  D   + +  +        +  FG  +     LR   +      +   L+   +E 
Sbjct: 218 VVNARDEALQRVLQRGF---WSEVQRFGPKREEPGALRARGEPHAFDVLRGSLKIGRVEW 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  +          +TA  AL+ F       +R       G   + D
Sbjct: 275 AL--LGEHNQLNALAAIAAAEHAGVAPETAAAALASFQNVR---RRLELRGEAGGVKVYD 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNIS 402
           + +  +P +M+  I  L      G  R +AV     E    +       A++  +L +  
Sbjct: 330 D-FAHHPTAMRTTIDGLR--RKVGAARILAVF----EPRSNTMKLGTMKAQLPWALEDAD 382

Query: 403 HVW-LSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L G    ++K+AL P       ++T+D L   I  +   GD V
Sbjct: 383 LAFGLQGDWGWSVKEALAPLGAKAATADTVDALVAAIARAAQPGDHV 429


>gi|312148110|gb|ADQ30769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi JD1]
          Length = 451

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 121/344 (35%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++ +     S       +  F +    DF  +    C+E    +V   G  +    +
Sbjct: 221 QDQAYCKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNGNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++       + +  +G   R     +       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNR---TGQILNNFKGIEHRLEFVKSVQNVMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|146308841|ref|YP_001189306.1| UDP-N-acetylmuramate [Pseudomonas mendocina ymp]
 gi|145577042|gb|ABP86574.1| UDP-N-acetylmuramate [Pseudomonas mendocina ymp]
          Length = 451

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 122/353 (34%), Gaps = 29/353 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKT++  ML   L     +    IG    + G+   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTSSSSMLAWVLEHAGMSPGFLIGGVPQNFGISARLG----DTPFFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I      +   +   G +   
Sbjct: 161 EYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTIPSEGLVIHP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             ++    +        ++T       ++  +Q R     ++ S  EV  +GK   VV  
Sbjct: 221 ASETALARVIEMGCWTPVQT-----TGEDGQWQARLL--SADGSRFEVSFEGKVEGVVEW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L     +       I+AL  F   +   +R          T+ D+ 
Sbjct: 274 QLTGQHNVANALAVLAAARHVGVVPALGIEALGKFINAK---RRMEKVAEVSGVTIFDD- 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNIS 402
           +  +P ++   +  L +     + + IAV+    E    S     H D LAE     +  
Sbjct: 330 FAHHPTAIATTLDGLRK-RVGDDTQVIAVI----EPRSNSMKLGAHRDGLAESAEQADAV 384

Query: 403 HVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +        L   + ++ +     ++++ +   +++    G  VV+  SN 
Sbjct: 385 FWYAPPNLGWDLAATVAQARNPTRVCDSLESIIDGVKALARPGTQVVIM-SNG 436


>gi|312973951|ref|ZP_07788122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|310331485|gb|EFP98741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1827-70]
          Length = 323

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 114/330 (34%), Gaps = 39/330 (11%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           + +F + E            +  V   P   ++  +   H   F  ++ I      +   
Sbjct: 17  ESNFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRI 76

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I    +D   +   A       + +      +   +Q +  K  ++ S  EV L
Sbjct: 77  VPGQGRIIWPENDINLKQTMAMGCWSEQELV-----GEQGHWQAK--KLTTDASEWEVLL 129

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            G+ + EV    +G H   N LM +     +      A  AL  F       +R      
Sbjct: 130 DGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINAR---RRLELRGE 186

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHID 391
               T+ D+ +  +P ++ A ++ L      G  R IAVL      M  MG         
Sbjct: 187 ANGVTVYDD-FAHHPTAILATLAALRG-KVGGTARIIAVLEPRSNTMK-MGICKDDLAPS 243

Query: 392 LAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           L           V+L       + V  + +A  +    H+S  +D L   +  +   GD 
Sbjct: 244 LGR------ADEVFLLQPAHIPWQVAEVAEACVQ--PAHWSGDVDTLADMVVKTAQPGDH 295

Query: 447 VVVKSSNSCGFY----RLINLLLEEFPAIQ 472
           ++V  SN  GF     +L++ L ++  A Q
Sbjct: 296 ILVM-SNG-GFGGIHQKLLDGLAKKAEAAQ 323


>gi|149923017|ref|ZP_01911435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149816138|gb|EDM75648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 437

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 121/401 (30%), Gaps = 71/401 (17%)

Query: 111 IAITGSVGKTTTKEML-------------------TIAL------SSIKKTYACIGSYNN 145
           + +TG+ GKT+T   L                      L      S+  + +      N+
Sbjct: 18  VGVTGTDGKTSTTRFLAAAMARAGGGPTARVTTVDASILRCDPDGSAPLREHGGPPPENH 77

Query: 146 HIGV-PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              +  L   R      F   E   + L  I F T      + V T +   HL      E
Sbjct: 78  RAFLRHLGQLRDEPGPRFAAIEATSTTLA-IGFATAW-PFRVGVFTNLGHDHLRAHGSYE 135

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQL 260
              ++KA++F  L   G   LN DD     L A+    G++ ++  G    + +  D +L
Sbjct: 136 HYLASKAQLFLSLPPGGFAVLNADDPTHA-LVAEVLPEGVQALWFAGPGRAEDRPVDLRL 194

Query: 261 RKWKQ------------CSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSI 305
                              ++  ++  L   S     +    +     +N    L     
Sbjct: 195 STLPSSPGEPPEPRSAWTGQRLRVDCSLPAGSALPSTLTLRALPRFQTENAAAALLAALA 254

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISVLS 361
           L      A  A++   P  GR +        A  +     +   Y   P +++  +    
Sbjct: 255 LGLPAAPAAAAIAECEPPVGRFELLALPELDAEARARLPRVVIDYAHTPEALELVLRCAR 314

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
           ++ P   GR   V G     G    S    L   L+      ++++           +  
Sbjct: 315 ELHP---GRCFVVFGA---GGSADPSKRAPLG--LAASVADRIFVTTDNPRDEDPSDIAR 366

Query: 417 ALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVVV--KS 451
            +   I   +   ++           +    GD+V+V  K 
Sbjct: 367 QVCAGIPAGHPHVVELDRGQAIALAIAEAQPGDLVIVAGKG 407


>gi|319782846|ref|YP_004142322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168734|gb|ADV12272.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 466

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 110/354 (31%), Gaps = 46/354 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  IAITG+ GK+TT  +    L +  +     G+    IG  +     P      + 
Sbjct: 112 PTAPFIAITGTNGKSTTTALTAHILKAAGRDAQMGGN----IGRAVMTLDPPEPDRHYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A+ K  +  G E   T  +
Sbjct: 168 ECSSYQID----LAPSINPTAGILLNLTPDHLDRHGTMQHYAAIKERLVAGSE---TAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DDS+   +  +    G + +    K       L         + ME      S     
Sbjct: 221 GIDDSWCAQIAERLERAG-RHVIRISKR----LPLTDGYFADGSNLMEAVHGRYSRVAFL 275

Query: 286 HGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            GI    G H AQN L  +     +  ++       S      G   R      +     
Sbjct: 276 EGIGSLRGQHNAQNALAAVAACLKIGLELGEI---QSGLESFPGLAHRMEQVGRKDHVLF 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-- 399
           I++S   N  +   A+S  ++I     G          E G           E L  +  
Sbjct: 333 INDSKATNADAAAPALSSFARIYWIAGGL-------PKEGG----------IEPLRGFFP 375

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV 449
            I+  +L G    A    L  ++    S T+              D    VV++
Sbjct: 376 RIAKAYLIGEAAPAFSATLGEAVPYEISGTLAAAVEHAAHDAAKDDSGEAVVLL 429


>gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 521

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 126/384 (32%), Gaps = 50/384 (13%)

Query: 24  QGFVNGISIDSRSIAPQE-AFF--AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              V  I+ D+R + P    F     K    DG D       KG    V  T+      +
Sbjct: 43  NEPVGSITYDTRKVEPGSMLFVKGRFKPEFLDGID------GKGLAAYVAETEYADRTKA 96

Query: 81  LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
           +      V+DV  A++ L+ A     +++ T+I ITG+ GKTTT  +    L+       
Sbjct: 97  IG---IIVEDVHKAMSLLSAAFYGMPQNELTVIGITGTKGKTTTAYLAHAILNEYSHGRC 153

Query: 138 ACIGSYNNHIGVPLTLA------------RMPVDV-----DFGIFELGMSHLGEIRFLTH 180
           A   S N  +     LA            RM  +       + + E+        R   H
Sbjct: 154 ALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNR--VH 211

Query: 181 LVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +   +     I+P H+S+      E+    K  +      + ++ L  D +  +LL   
Sbjct: 212 GLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRRLIAN---SRSLVLGADCNHRDLLMQD 268

Query: 239 SHALGIKTIYSFGKSKNA-----DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
           +   G+K +  F     A       Q+        ++   V + G  +  +     G   
Sbjct: 269 AADAGVK-VTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFN 327

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    + I             A        GR +R +     G   L+   +  N  S
Sbjct: 328 VTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGRMERVK----AGDGLLVYIDFAHNYLS 383

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +K+ +  + +       R   V G
Sbjct: 384 VKSLVDEMVRTYGERRPRITLVSG 407


>gi|221632096|ref|YP_002521317.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
 gi|221157253|gb|ACM06380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
          Length = 469

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 101/333 (30%), Gaps = 34/333 (10%)

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +    L   +      G+         TL  +  D    + EL    L  +    H +
Sbjct: 131 ATLCAAILRQWRPDTVLAGNLGRSALE--TLPGIQPDTPV-VLELSSWQLEGLDE--HGL 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            PHIAV+T+I+P HL  +   E    AK  I           +N DD     +       
Sbjct: 186 SPHIAVLTSISPDHLDRYPSFEAYIDAKRAIARHQRPGDWFVVNRDDP----VAWACRDA 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLM 298
           G   +  FG+                   +  +  G+  +++       +G H   N L 
Sbjct: 242 GCGKVVPFGRDDG-----VSDGAFWRDDRLIWRWGGEEQDLLRRSDFPLMGEHAVGNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +  A       AL    P      R       G    +++S    PA++ AA++
Sbjct: 297 AAAAALLRGASPAHVAAALREAEPVP---HRLEHVARLGTVDFVNDSAATAPAAVLAALA 353

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              +       R I ++G     G         +A  +       V L G      + AL
Sbjct: 354 TFRE-------RPIVLIGGGAAKGVSLAELAEAVARQVRAV----VLLDGTATPDYQAAL 402

Query: 419 -PRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
                 V    ++M+            G VV++
Sbjct: 403 RAAGARVEGPYQSMEEAVRRAAELAEPGAVVLL 435


>gi|295677766|ref|YP_003606290.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia sp.
           CCGE1002]
 gi|295437609|gb|ADG16779.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia sp.
           CCGE1002]
          Length = 512

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 151/465 (32%), Gaps = 76/465 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILH----AVQKGAGLVVVNT----------DMVASI 78
           D+R + P     A++    D  DF+       + +G  LV ++            ++ + 
Sbjct: 41  DTREVPPN--LSALEAHGVDA-DFVGGPFSPVLLEGVELVAISPGLSPLAADLLPLITAA 97

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IPV+G  ++      L           +IAITG+ GKTTT  +  +      K  A
Sbjct: 98  RERGIPVWG--ELELFSQALRTLGESGYAPKVIAITGTNGKTTTTSLTGLLCERAGKKVA 155

Query: 139 CIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             G+ +  +   L+ A       D  + EL    L      +H   P  A +  I   HL
Sbjct: 156 VAGNISPSLLDKLSEAIDQTALPDVWVLELSSFQL----ETSHTFTPDAAAVLNITQDHL 211

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--- 254
               G++  A+AK  IF          LN DD+    L   S   G   + +FG ++   
Sbjct: 212 DWHGGLDAYAAAKGRIFGTRT---VRVLNRDDARVMSLAPTS---GEAEVITFGVTEPKN 265

Query: 255 NADFQLRK------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + D+ L +        +  ++   +   +G S                   + +  ++ A
Sbjct: 266 DGDYGLFRDDGMVWLVEAQDRDATDESPRGTSFGAPTPKRRRKNEAAATPDIALKRLMPA 325

Query: 309 DVDTA-----------------------IKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           D                              L       G   R     +      +D+S
Sbjct: 326 DALRIRGLHNAANALAAYALARAIGLPGAPLLHGLREYRGEPHRVELIASIDGIDYVDDS 385

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +  AA+  L+Q       R + + G   +  E        LA  +  +    V 
Sbjct: 386 KGTNVGATVAALDGLAQ-------RVVLIAGGDGKGQEFEP-----LAAPVMRW-CRAVM 432

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     ++ AL    + +    T++       +    GD V++
Sbjct: 433 LIGRDAPQIRAALEHCGVAMTDHATLEEATRAATAIAQPGDAVLL 477


>gi|311693507|gb|ADP96380.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine bacterium HP15]
          Length = 464

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 13/257 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          +G       V   L     + DF + E  
Sbjct: 105 VMAVAGTHGKTTTTSMLLWILDQAGFEPGYLVGGVPRDFPVSARLG----NSDFFVIEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RPH  ++  +   H   F  +E I      +   +   G I   
Sbjct: 161 EYDSAFFDKRSKFVHYRPHTLILNNLEFDHADIFENVEAIERQFHHLVRTVPSQGLIIRP 220

Query: 227 YDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D   +  L     +    T       + +D++     +   + ++ +  +     +  
Sbjct: 221 AVDGHLDNALALGCWSPVQDTAIGSETPRMSDWRAELLSEDGSR-FLVIHHEQPVATLKW 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  +     +    D A+ AL  F   +   +R     +     + D+ 
Sbjct: 280 DQTGLHNVRNALSAIAAARHVGVTPDHAVAALCRFSGVK---RRMELLADIDGVRVYDD- 335

Query: 346 YNANPASMKAAISVLSQ 362
           +  +P ++   +  L  
Sbjct: 336 FAHHPTAIATTLEGLRN 352


>gi|262166568|ref|ZP_06034305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
 gi|262026284|gb|EEY44952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
          Length = 269

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 106/291 (36%), Gaps = 34/291 (11%)

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   H   F  +E I      +   +   G I     D       A     G  +  
Sbjct: 1   MNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEAL----ADVFKRGCWSET 56

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILT 307
            F   +  ++Q  K    ++ S   V L G+ + +V    +G H   N LM +     + 
Sbjct: 57  EFS-GEQGEWQAEKI--TADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVG 113

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              + A +AL +F   +   +R           + D+ +  +P +++  +  L   +  G
Sbjct: 114 VAPELACEALGLFVNTK---RRLELKGEINGVAVYDD-FAHHPTAIELTLGGLR--NKVG 167

Query: 368 EGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALPR- 420
           + + IAVL      M  +G   ++         SL++   V+L     +  ++++   + 
Sbjct: 168 DKKIIAVLEPRSATMK-LGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAKQC 220

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
           +     S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 221 AQPAQVSANMDEFVAMIAKEAKAGDQILVM-SNG-GFEGIHGKLMAALQQK 269


>gi|121593081|ref|YP_984977.1| cyanophycin synthetase [Acidovorax sp. JS42]
 gi|120605161|gb|ABM40901.1| cyanophycin synthetase [Acidovorax sp. JS42]
          Length = 861

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 103/325 (31%), Gaps = 50/325 (15%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKAEI 213
             +VD  + E      G +R      R  +AV+T +    HL     + +E++A  K  I
Sbjct: 531 HPEVDAAVLECA--RGGILREGLGFDRCQVAVVTNVGAGDHLGLNFITTVEDVAVLKRVI 588

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC------- 266
            + +   G   LN  D     + +         +  F   ++         Q        
Sbjct: 589 VQNVAADGYGVLNAADPHVAAMASVCPG----KVIFFAADRHHPVMATHRAQGNRVVYVD 644

Query: 267 ------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 +E SW E  +  + + +   G      +N++  +G    +     T  + L+ F
Sbjct: 645 GDSIVAAEGSWRE-TISLREIPITRGGTIGFQVENVMAAIGAAWGVGLPWQTIRRGLAGF 703

Query: 321 HPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R+     +G   + D  Y  NP +M+A +  +  +      R + + G   
Sbjct: 704 MNDSDNAPGRFNVMDYRGATVIAD--YGHNPDAMRALVQAVQAMPARQ--RSVVISG--- 756

Query: 380 EMGELSQSFHIDLAEVLSLYN--ISHVWLS----------GFHVLALKDALPRSIHVHYS 427
             G+       D+ E   +       V L           G  +  L+  L  +    Y 
Sbjct: 757 -AGDRRD---QDIVEQTQILGQSFDDVVLYQDACQRGRADGEVLALLRQGLQGAPRTRYV 812

Query: 428 ETMDG---LFLFIQSSLVDGDVVVV 449
             + G           L  GD+ +V
Sbjct: 813 TEIHGEFLAIDHALERLQPGDLCLV 837


>gi|240144189|ref|ZP_04742790.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203793|gb|EEV02078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
          Length = 454

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 50/366 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +  +A R   K  + AITG+ GKTTT  ++   L          G+         ++  
Sbjct: 98  GEAELAYRFE-KGRVAAITGTNGKTTTTTLVGEILKKCYPEVFVAGNIGIPYT---SIVE 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +    + E+    L  +        P ++ I  I P HL     +E    AK  I +
Sbjct: 154 KTTEQTVTVTEISSFQLETMETF----HPSVSAILNITPDHLDRHHTMEAYIRAKEGITK 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--- 272
              K  T  LNY+D                 +  F             +   E  ++   
Sbjct: 210 CQTKEDTCVLNYEDEILRKFAETLKV----NVLFFSSK----------RPLEEGIYLQEN 255

Query: 273 EVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + + GK  E            +G H  +N++   G    + A +D   + L  F   + 
Sbjct: 256 TIWIAGKETERQRLIDVGELKLLGIHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVK- 314

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       ++S   NP    AAI  +  ++     R+  ++G     G   
Sbjct: 315 --HRIEFVRDLHGVLYYNDSKATNPD---AAIRGIGSMN-----RKTLLIG-----GGYD 359

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVD 443
           ++   D         +  + L G     +     +    ++   +T++            
Sbjct: 360 KNLEFDAWIESFDGKVKCLLLIGQTKDKIAVCARKHGFENIVCCDTLNEAVNICYRLAKP 419

Query: 444 GDVVVV 449
           G+ V++
Sbjct: 420 GEAVLL 425


>gi|291538690|emb|CBL11801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 454

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 115/363 (31%), Gaps = 44/363 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +  +A R   K  + AITG+ GKTTT  ++   L          G+         ++  
Sbjct: 98  GEAELAYRFE-KGRVAAITGTNGKTTTTTLVGEILKKCYPEVFVAGNIGIPYT---SIVE 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +    + E+    L  +        P ++ I  I P HL     +E    AK  I +
Sbjct: 154 KTTEQTVTVTEISSFQLETMETF----HPSVSAILNITPDHLDRHHTMEAYIRAKEGITK 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K  T  LNY+D                 +  F   +         ++        + 
Sbjct: 210 CQTKEDTCVLNYEDEILRKFAETLKV----NVLFFSSKRP-------LEEGIYLQENTIW 258

Query: 276 LQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           + GK  E            +G H  +N++   G    + A +D   + L  F   +    
Sbjct: 259 IAGKETERQRLIDVGELKLLGIHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVK---H 315

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     +       ++S   NP    AAI  +  ++     R+  ++G     G   ++ 
Sbjct: 316 RIEFVRDLQGVLYYNDSKATNPD---AAIRGIGSMN-----RKTLLIG-----GGYDKNL 362

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDV 446
             D         +  + L G     +     +    ++   +T++            G+ 
Sbjct: 363 EFDAWIESFDGKVKCLLLIGQTKDKIAVCARKHGFENIVCCDTLNEAVNICYRLAKPGEA 422

Query: 447 VVV 449
           V++
Sbjct: 423 VLL 425


>gi|71897743|ref|ZP_00679969.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
 gi|71732298|gb|EAO34352.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
          Length = 471

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 136/422 (32%), Gaps = 41/422 (9%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           ++   +      VVV      S G+ ++                +A R+      +A+ G
Sbjct: 54  YLPEHIAADCAEVVVG--NALSRGNAAVEALLDSGCRYISGPQWLAERVLPGRDTLAVAG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHI--------------GVPLTLARMPVDV 160
           + GKTTT  +L   L +  +     IG    +                 PL    +   V
Sbjct: 112 THGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEVSAAV 171

Query: 161 DFG-IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP +A++  +   H   F  +  I      +   +
Sbjct: 172 RPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHLVRTI 231

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + +N +D   + L           +  FG      +  R     ++ S   V  +
Sbjct: 232 PGRGRLIVNGED---QRLAEVLAMGCWTPVERFGFDLEFHWSARLI--AADGSRFSVWHE 286

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G  + +V    +G H   N L  L     +       I +L+ F   +   +R  C   +
Sbjct: 287 GCEVGQVSWSLLGRHNVLNALAALAAAHAVGVAPAAVIPSLAQFRSVK---RRLECLGER 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC----EMGELSQSFHIDL 392
           G  T+ D+ +  +P ++    + L  +  +    RI V  +M      +G  +Q+    L
Sbjct: 344 GAVTVYDD-FAHHPTAIA---TTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSL 399

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               ++  + H  L       +         VH     +GL   +   +   D VV   S
Sbjct: 400 QAADTVVFLDHPGLVWNAAGVVAQM---HGQVHVVHDTEGLLSMLNEVVHASDHVVFM-S 455

Query: 453 NS 454
           N 
Sbjct: 456 NG 457


>gi|294056594|ref|YP_003550252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615927|gb|ADE56082.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 421

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 96/313 (30%), Gaps = 56/313 (17%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +I +TG+ GKTT   +L   L +        G+    +           DV + + E
Sbjct: 98  NGPLIGVTGTNGKTTVTTLLADGLENAGFRAVPAGNIGRPLSEVWLEFGENPDV-WAVCE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +          L   +     + T  A  HL  +  ++    AK ++   L     + + 
Sbjct: 157 ISSFQ----AELPLGIELDYLIWTNFAEDHLDRYESMDAYFEAKKQLLNCLSPGAPVLM- 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 + +K +         +              ++   E S      Q K       
Sbjct: 212 -----GKSVKLEGALDAEHLPW--------------YQSLEEGSTFTAMPQRK------- 245

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N  +   + + L   ++  I+A + F        R       G    +++S 
Sbjct: 246 --------NFNLAAELWNQLGLPMEPLIEAANQFDLPP---HRMHLVAEWGGVKFVNDSK 294

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AAI   +Q      G      G   + G+L QSF   +A       + H +L
Sbjct: 295 ATNFHAALAAIRG-AQGPVFWIG------GGSSKGGDL-QSFAEQVA-----ATVDHCFL 341

Query: 407 SGFHVLALKDALP 419
            G    +L D L 
Sbjct: 342 YGEVAPSLSDCLK 354


>gi|218661064|ref|ZP_03516994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli IE4771]
          Length = 278

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 21/261 (8%)

Query: 200 FSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
              +E   +AK  +F+ L   G    +  DD +       +   G   + + G+  +   
Sbjct: 1   HPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAIKAAADAG-HDVRTVGRKGD-YL 58

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            L++ +    +   E+ +  +  EV     G     N L+  G+      +   A+ AL 
Sbjct: 59  TLKRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMTALE 118

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                 G   R     +     L    Y   P +++   +VL+ + P   GR + V G  
Sbjct: 119 KLVGASG---RLELVGHTKDGALAYVDYAHKPDALE---NVLNSVRPFTTGRVVVVFGC- 171

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--- 435
              G+  +     + E+        V ++  +  + + A  R+  +  +     +     
Sbjct: 172 --GGDRDRGKRPIMGEIACRL-ADVVIVTDDNPRSEEPASIRAEIMAAAPCASEIADRAI 228

Query: 436 FIQSS---LVDGDVVVV--KS 451
            I+ +   L  GD ++V  K 
Sbjct: 229 AIREAVAMLTSGDTLIVAGKG 249


>gi|209524823|ref|ZP_03273369.1| cyanophycin synthetase [Arthrospira maxima CS-328]
 gi|209494702|gb|EDZ95011.1| cyanophycin synthetase [Arthrospira maxima CS-328]
          Length = 895

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 119/344 (34%), Gaps = 40/344 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
            +V GA+  +       S+  I+++TG+ GKTTT  +L   +    K      +   +I 
Sbjct: 469 RNVAGAVMDMLFPGSSPSRIPILSVTGTNGKTTTTRLLAHIMKQTGKVVGYTTTDGTYIG 528

Query: 148 ---------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                      P +   +  D    +  L  +  G +R         I V+  +A  HL 
Sbjct: 529 DYMAEPGDNTGPQSAHLILCDPTVEVAVLESARGGILRSGLGFDTCDIGVVLNVAADHLG 588

Query: 199 --NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             +   IE++A  K+ + E +   G   LN DD     +  +  A     +  F  + + 
Sbjct: 589 LGDIDTIEQMAKVKSVVAEAVSDRGYAILNADDPLVAAMSERVKA----QVAYFSMNPDN 644

Query: 257 DFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  LR  +     +  E                Q  ++ +   G+   M  N L      
Sbjct: 645 EIILRHTEAGGLAAVYENGYLSILKGDWTLRIEQAVNVPLTMGGMAPFMIANALAACAAA 704

Query: 304 SILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 ++    AL+ F    +    R        +  LID  Y  NPAS +A    LS 
Sbjct: 705 FAQGVKIEHIRTALATFIASADQTPGRMNLFNMGSYHALID--YAHNPASYEA----LSG 758

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              +  G RI V+G     G+      + L + LS      + +
Sbjct: 759 FVNNWPGPRIGVVGGP---GDRRDEDFVTLGK-LSAKMFDRIIV 798


>gi|24987384|pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase
           Murc (Tm0231) From Thermotoga Maritima At 2.3 A
           Resolution
          Length = 469

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 107/342 (31%), Gaps = 42/342 (12%)

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L  ++K       +   I   L            ++EL      E         P+
Sbjct: 132 VAHVLKHLRK---SPTVFLGGIXDSLEHGNYEKGNGPVVYEL-----DESEEFFSEFSPN 183

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             +IT     HL N+   +    SA  +I      T  +    +D     L         
Sbjct: 184 YLIITNARGDHLENYGNSLTRYRSAFEKISRN---TDLVVTFAEDELTSHLGD------- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
               +FG  K   + L        +    V+  GK   E+     G+H   N L  + + 
Sbjct: 234 ---VTFGVKKG-TYTLEXRSASRAEQKAXVEKNGKRYLELKLKVPGFHNVLNALAVIALF 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNANPASMKAAISVLSQ 362
             L  D+   ++AL  F    G  +R+  A +     + + + Y   P  ++  +    +
Sbjct: 290 DSLGYDLAPVLEALEEF---RGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKE 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS------GFHVLAL 414
           +  +    +I V+        L +         ++     ++ V+ +      G     +
Sbjct: 347 VFENE---KIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGISGKXI 403

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            D+L       ++ E +  L   I  S+ +  V +   +   
Sbjct: 404 WDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGDI 443


>gi|222109851|ref|YP_002552115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
 gi|221729295|gb|ACM32115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
          Length = 861

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 104/323 (32%), Gaps = 46/323 (14%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS--NFSGIEEIASAKAEI 213
             +VD  + E      G +R      R  +AV+T +    HL     + +E++A  K  I
Sbjct: 531 HPEVDAAVLECA--RGGILREGLGFDRCQVAVVTNVGAGDHLGLNFITTVEDVAVLKRVI 588

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC------- 266
            + +   G   LN  D     + +         +  F   ++         Q        
Sbjct: 589 VQNVAADGYGVLNAADPHVAAMASVCPG----KVIFFAVDRHHPLMATHRAQGNRVVYVD 644

Query: 267 ------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 +E SW E  +  + + +   G      +N++  +G    +     T  + L+ F
Sbjct: 645 GDSIVAAEGSWRE-TISLREIPITRGGTIGFQVENVMAAIGAAWGVGLPWQTIRRGLAGF 703

Query: 321 HPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R+     +G   + D  Y  NP +M+A +  +  +      R + + G   
Sbjct: 704 MNDSDNAPGRFNVMDYRGATVIAD--YGHNPDAMRALVQAVQAMPARQ--RSVVISG--- 756

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSET 429
             G+      ++  ++L       V L           G  +  L+  L  +    Y   
Sbjct: 757 -AGDRRDQDIVEQTQILGQA-FDDVVLYQDACQRGRADGEVLALLRQGLQGAPRTRYVTE 814

Query: 430 MDG---LFLFIQSSLVDGDVVVV 449
           + G           L  GD+ +V
Sbjct: 815 IHGEFIAIDHALERLQPGDLCLV 837


>gi|254363249|ref|ZP_04979297.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153095146|gb|EDN75693.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 454

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 130/399 (32%), Gaps = 37/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 66  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDKWVLAVSGTHGKTTTTGMLAW 125

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+       P    F + E            +  V   P 
Sbjct: 126 ILDQNGIDTGFLIGGVAGNFGISARAGNSP----FFVIEADEYDSAFFDKRSKFVHYTPK 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  +   H   F  ++ I      +   + ++G I     D   +          ++
Sbjct: 182 TLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGCILSAIADQNVQDTLKMGSYSQLQ 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I      +  ++  +     ++ S  EV  L  K  EV    IG H   N LM +    
Sbjct: 242 FI-----GEQNEWFAK--PLNADCSQFEVFHLGVKQGEVHWSIIGKHNMHNALMAIAAAH 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +V  A +AL  F       +R          T+ D+ +  +P +++A I  L    
Sbjct: 295 HAGVEVQGACEALGKFVNAN---RRLEVKGEVNGITVYDD-FAHHPTAIEATIDALRG-K 349

Query: 365 PHGEGRRIAVLG------DMC-EMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKD 416
                R +AVL        M     E++ S H   AE + +Y    + W        L  
Sbjct: 350 VGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHD--AEAVFVYQPDIIAWSVSEITNVLSQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   ++S  +D L   +       D ++V  SN  
Sbjct: 408 ------PAYWSANIDDLVDLVVKEAKPTDHILVM-SNGA 439


>gi|149919590|ref|ZP_01908069.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plesiocystis pacifica SIR-1]
 gi|149819533|gb|EDM78961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plesiocystis pacifica SIR-1]
          Length = 631

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 131/378 (34%), Gaps = 37/378 (9%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           + G+ GKTTT  +LT  L          IG    ++G    L R     D  + E     
Sbjct: 108 VAGTHGKTTTSSLLTWLLRVAGADPSYLIGGVPQNLGRGSHLGRG----DVIVLEGDEYD 163

Query: 172 LGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                  +  +  RP  A++T++   H   F   E+I  A  E  E +   G + ++  +
Sbjct: 164 TAFFDKKSKFLHYRPVKAILTSVEFDHADIFDSYEQIRDAFVEFVELIPADGLLVIDAAN 223

Query: 230 SFFELLKAKSHA-LGIKTIYSFGKSKNAD-----FQLRKWKQCSEQSWMEVQLQGKSM-E 282
                + AK+   +    + + G++ + D      ++   +  + ++  E+  +G  +  
Sbjct: 224 EGAVEVAAKAQCEVQSYRVLNRGEAPSEDLATWCVRVTS-RPGARRTAFELYERGSLVGS 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G +   N+     +       V+   +A+ +F   +   +R           L+
Sbjct: 283 FSTLLTGAYNLANITAAFAVARSEGYSVEALGEAIRLFRGVK---RRQELLGVVQGVRLM 339

Query: 343 DESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            + +  +P ++   I  L +            P     R  V  D         +  + +
Sbjct: 340 QD-FAHHPTAVDLTIRALRRRYPEGALHVCFEPRSSSSRRDVFFD-GYTAAFDAASRVYV 397

Query: 393 AEVLSLYNI-SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           A V +   +     L      AL  AL  R        ++  L   +      GD VV+ 
Sbjct: 398 APVYAPERVPDGQVL---DTTALASALRSRGATASNYGSIAELGDAVIEHAAPGDTVVLL 454

Query: 451 SSNSCGFYRLINLLLEEF 468
           SS + G   L + LLE F
Sbjct: 455 SSGAFG--GLADTLLERF 470


>gi|182415383|ref|YP_001820449.1| Mur ligase middle domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842597|gb|ACB76849.1| Mur ligase middle domain protein [Opitutus terrae PB90-1]
          Length = 496

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 117/377 (31%), Gaps = 40/377 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL+ L +  R       I + G+ GKTTT  +    L +  +    +         P T
Sbjct: 95  AALHSLVLNVRRN-----IVVCGTHGKTTTTALTAYLLRANGRDPGFL--IGGVPIDPPT 147

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAK 210
              +    D  + E            +  +   PHIAV+  +   H   F  + ++    
Sbjct: 148 GNHLGAAADPFVIEGDEYDSAFFDKRSKFIHYAPHIAVLNNLEFDHADIFRDLADVQRTF 207

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +   + + G + LN DD     L     AL    +   G  +  D ++  +++ +   
Sbjct: 208 VHLTRIVPRNGFVVLNGDDENLRAL----GALPWTNVVRVGTGERNDLRIEAFRESAAGG 263

Query: 271 WMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL------------ 317
              +  QG+   EV     G   A+N  M      +     D A                
Sbjct: 264 EFGLSWQGQPWAEVRWPLPGLFNARNAAMAATAAQLALLPRDAARSGRVGELFASAAGAE 323

Query: 318 ----SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
               +      G  +R    L+    T+I++ +  +P ++      L        G  + 
Sbjct: 324 RLDLAALARFRGVKRRQEVLLDTPALTVIED-FGHHPTALA---ETLHSFRARFPGAILT 379

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
            + +       +++        L+L     V+L     +   D L              L
Sbjct: 380 AVFEPRSNTARTKALEAAFMRSLAL--ADEVYL---GAVNRADKLAAGERFDTVAVAQHL 434

Query: 434 FLF-IQSSLVDGDVVVV 449
               +++     + V++
Sbjct: 435 EQLGVKAHSAPTNAVLL 451


>gi|167825931|ref|ZP_02457402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 9]
          Length = 540

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 41  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 98

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 99  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 155

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 156 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 211

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 212 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 268

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 269 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 328

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 329 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 385

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 386 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 432

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 433 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 473


>gi|301168123|emb|CBW27709.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bacteriovorax marinus SJ]
          Length = 497

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/385 (12%), Positives = 126/385 (32%), Gaps = 51/385 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ I G+ GKTTT  ++T     +                  TL         G + 
Sbjct: 138 DVNVVGIAGTHGKTTTTYLMTQVFEKLGHNPGYFIGGVVDGRKSSTL-------GDGKYF 190

Query: 167 LGMSHLGEIRFLTHLVRP-----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
              S   +  +   + +         ++T++   H   F+ IE+I +    + +  +  G
Sbjct: 191 FIESDEYDSAYFEKISKFRSYSIDHLILTSLEFDHADIFNDIEDIKNEFRAMLDSFK--G 248

Query: 222 TIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +    D+S+    EL+           + ++G+        +      + +   +  +G
Sbjct: 249 KLIY--DNSYKATNELVSEYGKDFKENFLIAYGEENP-----KIKSVAKDGTSFSLIWKG 301

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             ++   + +G H   N+   +        + +    +++         +R +    +  
Sbjct: 302 GELDFKTNLVGKHNILNLSSVILFALGEGIEYENIKSSITNLKLV----RRRQEVRGKYQ 357

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ + +  +P +++     +  + P    +++ V+ +       S  F  + A   +L
Sbjct: 358 EAIVIDDFAHHPRAVELTTEGIKNLYPE---KKVKVVIEPNSATARSDIFQSEFA--TAL 412

Query: 399 YNISHVWLSGFHV-------------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
               +V  +                   L +     +       ++ L   I + + D D
Sbjct: 413 KCADYVVFAKPQRHTSVKGAKDLDGHKILSELEKIGVKGTIQTNLEDLVKEI-NKIADKD 471

Query: 446 VVVVKSSNSC--GFYR--LINLLLE 466
            V++  SN    G ++   +  L+ 
Sbjct: 472 TVLLVLSNGTCLGLWQSDFVEKLIN 496


>gi|49475857|ref|YP_033898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           henselae str. Houston-1]
 gi|62900525|sp|Q6G2Q3|MURD_BARHE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49238665|emb|CAF27911.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Bartonella
           henselae str. Houston-1]
          Length = 466

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 122/387 (31%), Gaps = 41/387 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +F+   +  G  L       V       +I + G  +  V    + L            I
Sbjct: 65  EFVALILAPGVPLTYPQPHWVVDKARQANIEIIGDIELFVRARNHFLQQYGFCDEDVPFI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L   L  +       G+    I       +  V     + E     
Sbjct: 125 AITGTNGKSTTTALLAHLLEQMGYDVQMGGNIGTAIL----TLKPFVKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     L   ++P I ++  + P H+          +AK  +  G  +    F++ DD+ 
Sbjct: 181 ID----LAPSLQPTIGLLLNLTPDHIDRHGSFAHYVNAKKNLVTGASQ---AFISVDDAA 233

Query: 232 FELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            ++L  +    G   + +  K       F     +  S        L    +  +    G
Sbjct: 234 CQVLYRQLLHEG-HHVEAVSKEHFVENGFYADGTQLFSVCQGRRHMLAD--LASMAALRG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H AQN LM L  +  L        K L+ +    G   R +     G    I++S   N
Sbjct: 291 SHNAQNALMALATLQALKITDPHMNKHLASYQ---GLAHRMQQVRKMGSVLFINDSKATN 347

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS--FHIDLAEVLSLYNISHVWLS 407
             +   A++  + I          V G   E G +S    FH           I   +L 
Sbjct: 348 AEASAPALAAFNNIF-------WIVGGQAKEAGIVSLRGFFHK----------IRKAYLI 390

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLF 434
           G         +  S     S T++   
Sbjct: 391 GAAAEEFAGVIGSSFPFSMSLTLENAV 417


>gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
          Length = 517

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 139/430 (32%), Gaps = 56/430 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHYDGHDFILHAV 61
           WT     Q I G             I+ D+R +            K  + DG D      
Sbjct: 27  WTLD--AQTING------FDKPFGSITYDTRQVVSGALLCCKGRFKAEYLDGID------ 72

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGK 119
            +G    V   D      +   P   V+D   A++ L+       +++  +I ITG+ GK
Sbjct: 73  DRGLAAYVAENDFS---AATKAPGLIVNDARKAMSLLSAAFYGYPQNQLKVIGITGTKGK 129

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIR 176
           TTT  +    L+       A   S +N +     +       +       +  +    ++
Sbjct: 130 TTTAYLTQAMLNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMREAADNGMK 189

Query: 177 FLTHLVR-------------PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKT- 220
           +L   V                +A    I+P H+S       E+    K +I +      
Sbjct: 190 YLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIVKNCRSLV 249

Query: 221 -GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            GT   + D      L  +  A+    + +F   + +   +  W + ++ S   + ++G+
Sbjct: 250 LGTACAHAD------LIRQDAAIADIPVTTFALGEASAADVTAWPESADHSRFAIAVEGE 303

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDT--AIKALSVFHPKEGRGKRYRCALNQ 336
            +  +     G     N    + I   +  D     A +AL    P    G+       +
Sbjct: 304 QIGSLSLQLDGDFNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIAGRMEHFHDTK 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I + Y  N AS+ A +  + Q     +     V G     G  +     ++    
Sbjct: 364 SNTIAIVD-YAHNYASVTALLDYVDQRYGKDDPEVTLVTGS---AGNKAYDRRSEIVR-A 418

Query: 397 SLYNISHVWL 406
           +   ++H+ L
Sbjct: 419 AQNRVNHLIL 428


>gi|188590785|ref|YP_001919870.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|188501066|gb|ACD54202.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 872

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 159/453 (35%), Gaps = 67/453 (14%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  G     H F    +++  G  ++N  M+      +IP+  V                
Sbjct: 444 AAPGIRM--HHFPSKGIERNVGKAIIN--MMYGENPKNIPIVSVT------GTNGKTTTT 493

Query: 105 RSKATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R    +++  G SVG T+T          I     CI   ++          +  DVD  
Sbjct: 494 RLINHVLSKMGYSVGMTST--------EGIYVNNKCIHKGDDSGFNSAKTILLNRDVDIA 545

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTG 221
           + E   +  G IR         I+VIT I   HL     + +E+++  KA + E +++ G
Sbjct: 546 VLE--TARGGLIRKGLAYDIADISVITNITNDHLGLDGINSMEQLSFVKALVGEAVKENG 603

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----- 276
              LN DD + + +  +  A  I     F K +N +   +         ++E        
Sbjct: 604 FTVLNADDKWSKTIINRIKANKI----FFSKYENNELIEKNISDGGIAVFIENDYIVVVN 659

Query: 277 --------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                       + + ++G+  +  +N++   G +  +  D     K +  F+     G 
Sbjct: 660 NHKKYSICSINDVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMDFNLDNNNG- 718

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+      G   ++D  Y  N    KA +S L++I    +   I V+G     G+     
Sbjct: 719 RFNIYEVDGRKIILD--YGHNIEGYKAVLSSLNKIKKDKD--LIGVIGIP---GDRCDDI 771

Query: 389 HIDLAEVLSLYNISHVWLS----------GFHVLALKDAL---PRSIHVHYS-ETMDGLF 434
            I++ ++ S   +  + +           G     LK+ +    ++  +H   + +  L 
Sbjct: 772 AIEIGKICSEM-LDKIIIKEDKDRRGREQGEIASLLKNGVLRENKNSKIHVCLDEIKALE 830

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      GD +VV          ++  +  +
Sbjct: 831 KALM-ISKKGDTIVV---FFEDLESIVKYIKNK 859


>gi|317484861|ref|ZP_07943753.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bilophila
           wadsworthia 3_1_6]
 gi|316923907|gb|EFV45101.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bilophila
           wadsworthia 3_1_6]
          Length = 445

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 133/413 (32%), Gaps = 72/413 (17%)

Query: 55  DFILHAVQKGAGLVV-VNTDMVASIGSLSIPVFGVDDVL-----------GALNKLAVAA 102
           DF   A   G  +V   ++        L +P  GV   +             + +  +A 
Sbjct: 58  DFAEWAESAGVEIVCGEHSPSQFRDAKLVVPSPGVAAAVISKFLPDGTPPEIMAETELAW 117

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  S   ++ +TG+ GKTTT  +    L     T    G+    +   +         D 
Sbjct: 118 RQLSGEPVLGVTGTSGKTTTTSLCAAMLKEQGLTVFTGGNIGTPLSEYILSGE---KADV 174

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L         + P + ++  I+  HL     ++E  SAK  +F    +T  
Sbjct: 175 VVLELSSFQL----QTCSTLHPRVGILLNISENHLDFHKDMDEYISAKMRLFANQTETDL 230

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             L       + L  K           +G       + RK        + ++QL      
Sbjct: 231 AVL---QDGMDELAGK-----------YG------IKARKIHYTESDRFPDMQL------ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N               + A +A++ F P E    R            +
Sbjct: 265 -----MGPHNRCNAEAAWLACREFGVTEEAAARAVAAFQPLE---HRLEKVAEINGVLYV 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S      +++ A+S         +   + + G   + G+L       L  +L   +  
Sbjct: 317 NDSKCTTVEALRVALSSF-------DRPVVLLAGGKFKGGDL-----PGLCPLLKE-HAR 363

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ------SSLVDGDVVVV 449
            V L G      + A   ++ V +  T++     +       +   +GDVV++
Sbjct: 364 CVALFGASRERFEPAWRDTLPVTWDRTLEQALRRVAGKDGQPALAHEGDVVLL 416


>gi|319776001|ref|YP_004138489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3047]
 gi|329123871|ref|ZP_08252426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus aegyptius
           ATCC 11116]
 gi|317450592|emb|CBY86809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3047]
 gi|327468712|gb|EGF14190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus aegyptius
           ATCC 11116]
          Length = 453

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 144/406 (35%), Gaps = 28/406 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L   P    + + E            +  V   P 
Sbjct: 125 ILEQNGLKPGFLIGGIAGNFGISARLGVSP----YFVIEADEYDTAFFDKRSKFVHYNPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 181 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 237 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 294 HTGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAIFATLTALRD-K 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             G  R +AVL        +    H D +A VL   +   +         + D   + + 
Sbjct: 349 VGGGVRILAVLE--PRSNTMKIGVHKDEIAPVLGRADAVFMLQPEQLSWEVADIANQCVQ 406

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
             +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|325290790|ref|YP_004266971.1| domain of unknown function DUF1727 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966191|gb|ADY56970.1| domain of unknown function DUF1727 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 466

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 102/360 (28%), Gaps = 69/360 (19%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + ITG+ GKTT+  +L   L S     A      +    I   L               
Sbjct: 54  TVIITGTNGKTTSNNLLAAILRSAGIRVAFNREGANMITGIAGALLQNTSFGGKPLADIL 113

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L       +  L   +RP +AV+T      L  +  ++        + E L +   + LN
Sbjct: 114 LLEVDEATVPVLCRDIRPRMAVVTNFFRDQLDRYGELDTTVR---LVKEALPEQTELILN 170

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG----------------------------------- 251
            DD     +      +G + +Y +G                                   
Sbjct: 171 ADDPLVTRM-----GIGREHVYYYGVKSLPGSAQTSDETREGKYCALCGEELSYELFHYG 225

Query: 252 ------------KSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHMAQNM 296
                       +    D         ++     V    L+    E      GY+   N 
Sbjct: 226 QLGLYYCRGCGFRRPEPDLTADDINTRTDGIQFSVLAKDLRDNEQEFFLPLQGYYNLYNG 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L        L  D     K L+ F    GR + +     +   TL+      NP      
Sbjct: 286 LAAFCSAMRLGIDPGDIRKGLAGFVSDAGRMENFVLNGKRATLTLVK-----NPMGFNQV 340

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I  L  +  + + R +  + D+   G ++S  + +D     +   I  +  SG     + 
Sbjct: 341 IQTLIHL--NQDLRLLIAINDLAADGRDISWLWDVDFEAFGNTQKIRQIICSGLRAEDMA 398


>gi|256421380|ref|YP_003122033.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
 gi|256036288|gb|ACU59832.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
          Length = 450

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDV 160
            +   +   + + GS GKTTT  M+   L    + +   +G+        + +   PV V
Sbjct: 98  YQESQQKNRVVVGGSHGKTTTTAMIMHVLQQSGQAFDYLVGARLAGFPQSVNITDAPVIV 157

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G  E   S + E R   H + PHIAV+T IA  H++ F   E      A     ++  
Sbjct: 158 CEGD-EYPASVI-EKRPKFHFLHPHIAVLTGIAWDHINVFPTFENYLEQFAIFLRTMKAG 215

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+  N  D     L  K+  L +K +         +  +       +Q+ +EV      
Sbjct: 216 HTLIYNNTDPELVKLV-KAEGLHLKLVPYDIPQHQINNGVTTVHFGDQQTELEV------ 268

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   NM     + + L    +  +KA++ F   +G  KR           
Sbjct: 269 -------FGDHNLLNMHAARLVCNELGISDEVFLKAIATF---KGAAKRLELVGKNEHCA 318

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           +  + +   P+ +KA IS L    P    + I VL
Sbjct: 319 IYRD-FAHAPSKVKATISALRDQYPQ--RKLIGVL 350


>gi|307154774|ref|YP_003890158.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7822]
 gi|306985002|gb|ADN16883.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7822]
          Length = 451

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 124/376 (32%), Gaps = 31/376 (8%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              L + V   +  +  + +L +A R    +  + +TG+ GKTTT  ++T    +     
Sbjct: 76  PWDLPVLVEAREKGIDTIGELELAWRSLKPSQWVGVTGTNGKTTTTALVTAIFQAAGFHA 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+   +    L L +     D+ I E+    +      +  + P I + TT  P HL
Sbjct: 136 PACGNIG-YAACELVLKQDQKPYDWIIAEISSYQI----ESSLDLSPKIGIWTTFTPDHL 190

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +    + KA +     +      N DD +   +            ++  K K A 
Sbjct: 191 ERHKTLSNYYNIKAALLHRCRRQ---IFNGDDPYLHNM---GLTQWQDAYWTTVKGKEAL 244

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                     + +W+    +  +   +   +G H  QN+LM +    +   D     + +
Sbjct: 245 LCDPSKGVYLQDNWVVAFGELIAPINLFKMVGEHNQQNLLMAVAAARLAGVDKQAITETM 304

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F        R      +     I++S   N  +    +S +   +       I + G 
Sbjct: 305 ATFSGVP---HRLELIRTRAGVAYINDSKATNYDAAVVGLSSVETPA-------ILIAGG 354

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
             + G+ ++         L     + V L G         L  S +  Y   ETMD    
Sbjct: 355 QAKKGDDTEW------IKLIKAKAAAVLLIGEAASTFAQRLHDSGYDSYEIVETMDKAVQ 408

Query: 436 FIQSSLVDGD--VVVV 449
                  D    VV++
Sbjct: 409 RGADLAADKAARVVLL 424


>gi|270159321|ref|ZP_06187977.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|289165857|ref|YP_003455995.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
 gi|269987660|gb|EEZ93915.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|288859030|emb|CBJ12959.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
          Length = 879

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 118/347 (34%), Gaps = 46/347 (13%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI---------ALSSIKKTY-- 137
            +V   +  +   + L ++  I+A+TG+ GKTT   ++             ++    Y  
Sbjct: 463 RNVAKPILDMLYPSHLSARIPIVAVTGTNGKTTVVRLIAHFARYANHHVGFTTTDGVYLN 522

Query: 138 -ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I S +        +     +VDF + E      G +R         I++IT I   H
Sbjct: 523 NKLIHSGDCSGPGSAQVVLYDPEVDFAVLECA--RGGILRSGLGFDECDISIITNITGDH 580

Query: 197 LS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-----------SHALG 243
           L   +   +EE+A  KA +    +K+G   LN DD+    L+                  
Sbjct: 581 LGLNDIHTLEELAQVKAVVAHSTKKSGYAILNADDNLTYELRNDFDCNIALFSMYESPRI 640

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K   S G +   D      ++ ++++++      KS+ +  HG    M  N+L      
Sbjct: 641 RKHCRSGGLAAYIDQGKLVVQRGADRTFLS---NIKSIPLSFHGAATSMIANILAATLAG 697

Query: 304 SILTADVDTAIKA----LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            I     D   +A       F    GR   ++    Q     +   Y  N  +     + 
Sbjct: 698 VISQFSFDKIKEALHVFYPTFENLPGRMNLFKFPHCQ-----VMVDYAHNEGAFCELKNY 752

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           L  +      ++I ++G    +G+        L    +      + +
Sbjct: 753 LESV---HCAKKIGIIGA---VGDRRDEDIEKLGFQAASM-FDEIVI 792


>gi|116253050|ref|YP_768888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|118595681|sp|Q1ME31|MURD_RHIL3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115257698|emb|CAK08796.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 470

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 17/241 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   L S        G+    IG  +     P    + + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHILKSAGYDTQLGGN----IGTAVLTLDPPKAERYYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +  G   +    +
Sbjct: 168 ECSSYQID----LAPTLNPSAGILLNLTPDHLDRHGTMQHYADIKERLVAG---SDVAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DDS   L+  +    G+K +    ++  AD       K           L    ++ +
Sbjct: 221 GVDDSHSALIADRVERAGVKVVRISRRNVVADGIYAEGTKLIQAAGG--AMLPFADLDGI 278

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H AQN    +     +    D     L+ F    G   R +    +G    +++
Sbjct: 279 QTLRGSHNAQNAAAAVAACLAVGVSADAIRAGLASF---PGLKHRMQPVGQRGRVVFVND 335

Query: 345 S 345
           S
Sbjct: 336 S 336


>gi|330938046|gb|EGH41814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 332

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 95/258 (36%), Gaps = 21/258 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+         +KA +IAITGS  K+T   ++    ++  K  A  G+          L 
Sbjct: 96  LSGDIELFARYAKAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-----ALY 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +V+  + EL    L      T  +   +A +  I+  H+  +SG+     AK  IF
Sbjct: 151 LLSDEVELYVMELSSFQL----ETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G  +   + +N  D+    L  +         ++FG +K  DF     ++ + + ++  
Sbjct: 207 RGARQ---VVVNRQDALSRPLIGE-----GLPCWTFGLNK-PDFHGFGLREENGEKYLAF 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q +           G H   N L  L +   +    D  + +L  F   E R +  R   
Sbjct: 258 QFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLR--- 314

Query: 335 NQGFFTLIDESYNANPAS 352
                   ++S   N  +
Sbjct: 315 EHDGVHYYNDSKATNVGA 332


>gi|312149280|gb|ADQ29351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi N40]
          Length = 451

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 125/344 (36%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    DF  +    C+E    +V      +    +
Sbjct: 221 QDQAYYKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNDNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++   + L+ F   E R +  +   N       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNRTGQILNNFKSIEHRLEFVKSVQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + + + L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIINILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|297538642|ref|YP_003674411.1| cyanophycin synthetase [Methylotenera sp. 301]
 gi|297257989|gb|ADI29834.1| cyanophycin synthetase [Methylotenera sp. 301]
          Length = 856

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 135/394 (34%), Gaps = 48/394 (12%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           GA+     AA    +  ++ + G+ GKTTT  +++  L+          S   +I     
Sbjct: 455 GAILSTMFAAGDDGRIPLVTVAGTNGKTTTVRLISHILTCQGLRVGMTNSDGVYIEGRRI 514

Query: 153 LAR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS- 198
                          M  DVD  + E   +  G +R      R ++AV+T I    HL  
Sbjct: 515 DTGDCSGPKSARNVLMHPDVDAAVLE--TARGGVLREGLAFDRCNVAVVTNIGMGDHLGL 572

Query: 199 -NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--------SHALGIKTIYS 249
              + +E++A  K  + + +   G   LN  D     + A         +    +  I +
Sbjct: 573 SYITTVEDLAVVKRVVVQNVAPDGMAVLNAADPMTANMAAACPGAVTFFAQNGQLPVIAT 632

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                +    +   +  + Q   E ++    + V  +G      +N +  +     L  +
Sbjct: 633 HRAHGHRVVYVEGGQIVAAQQNNEHRIDLAKIPVTRNGTIGFQVENAMAAIASAWALKVE 692

Query: 310 VDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            D  ++ +S F +  +    R+     +G   + D  Y  NP ++ A +S +  I     
Sbjct: 693 WDVILQGVSTFVNDAQTAPGRFNFFEYRGASVIAD--YGHNPDAIVALVSAIENIPAK-- 748

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDAL 418
            +R+ V+    +  ++  S   ++           V L           G  +  L+  L
Sbjct: 749 -KRMVVISGAGDRRDIDISRQSEILGDA----FDEVILYEDQCQRGRADGEVLALLRSGL 803

Query: 419 PRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
             +      + + G         S L  GD+ ++
Sbjct: 804 ANAKRTKKVDEIRGEFVAIDAALSRLEKGDLCLI 837


>gi|33239474|ref|NP_874416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|44888179|sp|Q7VEJ1|MURC_PROMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33236999|gb|AAP99068.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 472

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 135/401 (33%), Gaps = 48/401 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIGSYNNHI 147
           +  L  L++  + A L  +   I I GS GKTTT  ++T  L    +   A IG    + 
Sbjct: 96  EKNLKILHRSDILAFLIKQQYSILIAGSHGKTTTSTIITTILGKANQDPTAIIGGIVPYY 155

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                + +      F I E   S     ++        I ++T I   H   ++ I+ + 
Sbjct: 156 NSNAYVGKGK----FLIAEADESDGSLTKY-----DGDIGLLTNIELDHTDYYTNIDSLI 206

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQC 266
           +   +  +  +K   I  NYD +          A   KTI+      KN +F        
Sbjct: 207 NTIKKFTKNCKK---IVANYDCNNLR------KACPDKTIWWSTNEFKNINFAAIPKIMN 257

Query: 267 SEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + +       GK ++ +     G H   N L  +        +       +S     E 
Sbjct: 258 GQITLASYYENGKYIDDISISLPGVHNLNNTLGAIAACRSADINFSDIKPHVSSLKCPE- 316

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-------QISPHGEGRRIAVLGDM 378
             +R++         ++D+ Y  +P+ ++  +S+          I P    R + +    
Sbjct: 317 --RRFQFKGIWKGRQIVDD-YAHHPSEIRETLSMARLMINTKKSILPMAADRIVVIF--Q 371

Query: 379 CEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKD---ALPRSIHVHY 426
                 ++    + A+ L          +Y+     + G     LK    A   ++ +  
Sbjct: 372 PHRYSRTRDLITEFAKNLGAADLVILTPIYSAGEEPIKGITSEKLKSCTLANNPNLPIFT 431

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +  L   I     + D+++   +      ++   L ++
Sbjct: 432 CKQLRDLENIINLKTRENDLLLFMGAGDI--TKVSEKLSKK 470


>gi|254450940|ref|ZP_05064377.1| mur ligase family protein [Octadecabacter antarcticus 238]
 gi|198265346|gb|EDY89616.1| mur ligase family protein [Octadecabacter antarcticus 238]
          Length = 556

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 119/384 (30%), Gaps = 59/384 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------TL 153
               +  +TG+ GK+TT  +     ++  K      S    +G  +             L
Sbjct: 155 HDVPVGMVTGTNGKSTTVRLTAAIGAAAGKCVGMSTSDWVRVGGEILDEGDYSGPAGARL 214

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKA 211
           A     VD  I E   +  G +R    +      ++T +A  HL  +    +  +A AK 
Sbjct: 215 ALRDPRVDLAIIE--TARGGLMRRGLPVPTADACLLTNVAADHLGTYGIMDVTALADAKF 272

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++ + +   G + LN DD   EL+K  +   G   I  FG     D  +           
Sbjct: 273 QLSDAIRPGGLLILNADDP--ELVKRAAQFSGD--ITWFGL--EFDRAILDIWIMGGGRV 326

Query: 272 MEVQ---------------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             V+               L          G       N L  + +   L   ++   K 
Sbjct: 327 AFVEDGQMVLARNGIVEPVLAVADFVPALGGAAKFNVYNALGAICLADALELPINAMAKG 386

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+ F             +  G   L+ + +  NP  + A  S +  I      RR+ + G
Sbjct: 387 LAGFTDTPDENPGRGNYVKVGGLNLLID-FAHNPHGVHALSSAIKSIPAK---RRLVIAG 442

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRSIHVH 425
                G+ S     D+ + +  +    V ++           G     + D L R    H
Sbjct: 443 Q---AGDRSDKDTCDMIQAIWTFEPDMVVVAELPDLLRGRQLGEMTTVMVDELKRLGSGH 499

Query: 426 Y----SETMDGLFLFIQSSLVDGD 445
                ++T     +        GD
Sbjct: 500 DNIITTDTEYSAVVRAMEWARPGD 523


>gi|2149905|gb|AAC45635.1| D-glutamic acid adding enzyme [Enterococcus faecalis]
          Length = 456

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 98/301 (32%), Gaps = 34/301 (11%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+A+     D  + EL    L  I        P IAVIT I  AHL      +E  +AK 
Sbjct: 155 TVAQEATAKDDLVMELSSFQLMGIETF----HPQIAVITNIFEAHLDYHGSRKEYVAAKW 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQS 270
            I + +    T+ LN++    + L   + A     +  F   +  +   L   K    + 
Sbjct: 211 AIQKNMTAEDTLILNWNQVELQTLAKTTAA----NVLPFSTKEAVEGAYLLDGKLYFNEE 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++   +            G H  +N L  + +  +         ++L+ F        R 
Sbjct: 267 YI---MPADE----LGIPGSHNIENALAAICVPKLKNVSNAQIKQSLTNFSGVP---HRT 316

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +           ++S   N  + + A+S           +++ +L    + G        
Sbjct: 317 QFVGEVQQRRFYNDSKATNFLATEMALSGFDN-------QKLLLLAGGLDRGNSFDEL-- 367

Query: 391 DLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V +L  +  + L G     LA     P    + ++E +              D ++
Sbjct: 368 ----VPALLGLKAIVLFGETKKKLAEAAKKPNIETILFAENVQTAVTIAFDYSEKDDTIL 423

Query: 449 V 449
           +
Sbjct: 424 L 424


>gi|16272091|ref|NP_438293.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae Rd KW20]
 gi|260581285|ref|ZP_05849102.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae RdAW]
 gi|1176353|sp|P43948|MPL_HAEIN RecName: Full=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase; AltName: Full=Murein peptide
           ligase
 gi|1573076|gb|AAC21795.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092034|gb|EEW75980.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae RdAW]
          Length = 453

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 144/408 (35%), Gaps = 32/408 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNPCVEYVLENNLKYTSGPQWLHDHLLRDRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+   L     D  + I E            +  V   P 
Sbjct: 125 VLEQNGLKSGFLIGGIAGNFGISARLG----DSPYFIIEADEYDTAFFDKRSKFVHYNPR 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I+  H   F  ++ I      +   +  +G +      S  E    ++ ALG  
Sbjct: 181 TLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVL----SSASEQSAKETLALGCW 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
           +   F   K+ ++   +    ++ S   V   G+ + EV  + +G H   N LM +    
Sbjct: 237 SQQQF-LGKDNEWFAERI--TNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAAAH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ A KAL  F   +   +R          T+ D+ +  +P ++ A ++ L    
Sbjct: 294 HTGVAIEDACKALGSFVNAK---RRLEVKGEVNSITVYDD-FAHHPEAILATLTALRD-K 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             G  R +AVL    E    +     H  D+A  L   +   +         + D   + 
Sbjct: 349 VGGGVRILAVL----EPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQC 404

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
           +   +++  +D L   I +     D ++V    S       ++++ L 
Sbjct: 405 VQPAYWNANLDRLVDMIVAKAQPTDHILVMSNGSFGGIHQ-KILDKLK 451


>gi|300309737|ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072522|gb|ADJ61921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 131/385 (34%), Gaps = 52/385 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD--VDF 162
               ++A+ G+ GKTTT  ML   L          IG    + GV   L          F
Sbjct: 101 QDKWVLAVAGTHGKTTTSAMLAWVLEHAGYQPGFLIGGVPMNFGVSARLGSDGQGGPAPF 160

Query: 163 GIFELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + E            +  V      AV+  +   H   F  +  I +    +   +   
Sbjct: 161 FVIEADEYDTAFFDKRSKFVHYRTRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGI 220

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-----QCSEQSWMEVQ 275
           G + +N  +   + + A+              S+  DF + + +        E    +V 
Sbjct: 221 GRLIVNGREPALQRVLARGCW-----------SEREDFGVAQGQSGWSLLTHEDGRFDVF 269

Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             G++   V     G H   N L  +     +   V  AI AL  F   +   +R     
Sbjct: 270 FDGQTQGTVEWQLTGEHNRMNALAAIAAARHVGVPVAQAIAALGAFQSVK---RRMELRG 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL----GDMCEMGELSQSFHI 390
           +     + D+ +  +P ++   ++ L      G  R +AVL      M  +G + Q+   
Sbjct: 327 SANGVAVYDD-FAHHPTAIATTVAGLR--KKVGAARILAVLEPRSNTMK-LGTMKQALPG 382

Query: 391 DLAEVLSLYNISHVWLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
            LA+         V+  G H         L +AL P        + +  L   ++++   
Sbjct: 383 SLAD------ADLVFGFGAHTGRDALGWDLGEALAPLGAKAAAFDDLAALVQAVKAAARP 436

Query: 444 GDVVVVKSSNSCGFY----RLINLL 464
           GD V+V  SN  GF     +L++ L
Sbjct: 437 GDHVLVM-SNG-GFGGVHQKLLDAL 459


>gi|327482317|gb|AEA85627.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 449

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 124/354 (35%), Gaps = 32/354 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A  G+ GKTTT  ML   L     +    IG    + G+   L   P    F + E  
Sbjct: 105 VLAAAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFGISARLGGTP----FFVVEAD 160

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I      +   +   G I   
Sbjct: 161 EYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGLII-- 218

Query: 227 YDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV- 284
                 E    +   +G  T + + G      +Q +     ++ S  EV   G+   VV 
Sbjct: 219 --HPESETALKRVIGMGCWTPVQTTG--DGGQWQAKLL--SADGSRFEVIFDGEVQGVVE 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L TL     +        +ALS F   +   +R          T+ D+
Sbjct: 273 WELTGRHNVNNALATLAAARHVGVLPKQGAEALSEFRSVK---RRMEKVAEVNGVTIYDD 329

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNI 401
            +  +P ++   +  L      G+   IAV+    E    S     H + LAE ++L + 
Sbjct: 330 -FAHHPTAIATTLDGLR--KRVGDTPIIAVV----EPRSNSMKLGAHREGLAESVALADQ 382

Query: 402 SHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +        L   +  S +     ++++ +   +++  V G  VVV  SN 
Sbjct: 383 AIWYAPANLGWDLAATVAGSPVPTTVCDSLEAIIAKVKADAVPGTQVVVM-SNG 435


>gi|239917863|ref|YP_002957421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
 gi|239839070|gb|ACS30867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 531

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 85/282 (30%), Gaps = 25/282 (8%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  A      A R  +    + +TG+ GKTTT  M+   L +  +     G+    +  
Sbjct: 135 DVELAWRLRERAGRKTAD--WVCLTGTNGKTTTVTMVEAILRADGRRAVACGNVGTPVLD 192

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +   R P   D    EL    L      TH + P  + +  +A  H+     +EE A+A
Sbjct: 193 AI---RDPQGFDVLALELSSFQL----HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAA 245

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +++           N  D     L  ++          F         L         
Sbjct: 246 KGKVYANTRV--ACVFNEQDPLTRTLVERADVQEGCRAIGFTTDTPG---LSDIGVVDGI 300

Query: 270 SWMEVQLQGKSMEVVH--------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                 L  +  E +              H   N      +   +        + L  + 
Sbjct: 301 LVDRAFLDNRRHEAIALAERADLGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYD 360

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             E    R +          +++S   NP +  A+++  S +
Sbjct: 361 RGE---HRIQLVATSRDIMWVNDSKATNPHAADASLAAFSSV 399


>gi|291567673|dbj|BAI89945.1| cyanophycin synthetase [Arthrospira platensis NIES-39]
          Length = 895

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 120/344 (34%), Gaps = 40/344 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
            +V GA+  +       S+  I+++TG+ GKTTT  +L   +    K      +   +I 
Sbjct: 469 RNVAGAVMDMLFPGSTPSRIPILSVTGTNGKTTTTRLLAHIMKQTGKVVGYTTTDGTYIG 528

Query: 148 ---------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                      P +   +  D    +  L  +  G +R         I V+  +A  HL 
Sbjct: 529 DYMAEPGDNTGPQSAHLILCDPTVEVAVLECARGGILRSGLGFDTCDIGVVLNVAADHLG 588

Query: 199 --NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             +   IE++A  K+ + E +   G   LN DD     + A+  A     +  F  + + 
Sbjct: 589 LGDIDTIEQMAKVKSVVAEAVSDRGYAILNADDPLVAAMSARVKA----QVAYFSMNPDN 644

Query: 257 DFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +R  +     +  E                Q  ++ +   G+   M  N L      
Sbjct: 645 EIIVRHTEAGGLAAVYENGYLSILKGDWTLRIEQAVNVPLTMGGMAPFMIANALAACVAA 704

Query: 304 SILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 ++    AL+ F    +    R        +  LID  Y  NPAS +A    LS 
Sbjct: 705 FAQGVKIEHIRTALATFIASADQTPGRMNLFNMGSYHALID--YAHNPASYEA----LSG 758

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              +  G RI V+G     G+      + L + LS      + +
Sbjct: 759 FVNNWPGPRIGVVGGP---GDRRDEDFVTLGK-LSAKMFDRIIV 798


>gi|15837720|ref|NP_298408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xylella
           fastidiosa 9a5c]
 gi|30316138|sp|Q9PEB0|MURD_XYLFA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|9106075|gb|AAF83928.1|AE003947_8 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xylella fastidiosa
           9a5c]
          Length = 468

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 102/321 (31%), Gaps = 38/321 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               A  G+    +   LT    P   ++   EL     G++       RP +A++  + 
Sbjct: 141 GHCTALAGNIGMPLLELLTPQPTP---EYWAIELSSYQTGDVAR--SGARPVLALVLNVF 195

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           P HL      +   + K  +   + +     LN  D     L                  
Sbjct: 196 PEHLDWHGSEQRYINDKLSLVT-VTRPRIALLNAADPRLASLAL---------------- 238

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +D +    ++       +V  +G        +    G H   N+   L  +  L  + 
Sbjct: 239 PQSDLRWFN-RRDGWHVRGQVVYRGDRAVLDTALIPLPGAHNGSNVCAVLATLEALGLNA 297

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                A   FHP      R +    +     +++S +  P +  AA+             
Sbjct: 298 VALAPAACNFHPLP---NRLQFLGERDGILWVNDSISTTPHATLAALDCF------LGRC 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-T 429
           R+AVL    + G   + F   +   +   +I  +  +G H+ AL   L       ++   
Sbjct: 349 RVAVLVGGYDRGVDWECFAARITRKV-PLDIVTMGANGPHIQALLAPLAAGRFGLHAAVD 407

Query: 430 MDGLFLFIQSSL-VDGDVVVV 449
           +       +++L   G V+++
Sbjct: 408 LPQAVALARTALGAQGGVLLL 428


>gi|256830373|ref|YP_003159101.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579549|gb|ACU90685.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 430

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 106/342 (30%), Gaps = 54/342 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIA+TG+ GKTTT  +++  L +  K     G+    +   L  A      D  + E+ 
Sbjct: 110 PIIAVTGTNGKTTTTTLISRILEANGKKVFTGGNIGTPLCEYLLGAE---QADILVLEVS 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      +    P + V+   +  HL     +EE  SAK  +F  +       +   
Sbjct: 167 SFQLQN----SPSFHPRVGVLLNFSANHLDYHETMEEYLSAKLSMFTHMGAEDLAVVPL- 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            S  + L+ +      + +Y                     +       G          
Sbjct: 222 -SMKDELEKRDFTRS-RRVYFV-------------------ASPRFTCPG--------LP 252

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +NM              +   + +  F        R            ID+S + 
Sbjct: 253 GEHNRENMEAAYLACRYFGLSPEDVQRGIDGFSTLA---HRIEAVAEHNGIVFIDDSKST 309

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              SM AA+      S     R +A  G + + G+L           +    +  V+L G
Sbjct: 310 TIDSMIAALK-----SQDRPVRLLA--GGVFKGGDLGAVL------PVLREKVRAVYLFG 356

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 ++A       + +  T++       +    G+ V++
Sbjct: 357 QSREIFEEAWSDCGKEISWDATLEEAVFRAAADARSGECVLL 398


>gi|254500899|ref|ZP_05113050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Labrenzia
           alexandrii DFL-11]
 gi|222436970|gb|EEE43649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Labrenzia
           alexandrii DFL-11]
          Length = 466

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 105/334 (31%), Gaps = 36/334 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  IAITG+ GK+TT  ++   L  +       G+    IG P+     P      + 
Sbjct: 112 PEAPFIAITGTNGKSTTTALIAHLLRELGLDVQMGGN----IGTPVLELEPPRPGRHYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P + +   ++P HL     +E  A+ K  +  G        +
Sbjct: 168 ECSSYQID----LAPTLDPTVGLHMNLSPDHLDRHGTLENYAAIKERLVAG---AKVAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS--EQSWMEVQLQGKSME 282
             DD    ++  +            G+ +  A       +     + +  EV L    + 
Sbjct: 221 GVDDGLSSMIADRLELARKPVCRIAGERELTAGIYAHNGRLIEAHDGAQTEVAL----LM 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H AQN       +  L    D    A+  F    G   R       G    I
Sbjct: 277 GIDSLRGDHNAQNAAAAFACLRALEIPADKIAAAMKNF---PGLHHRMEIVARTGRTLFI 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A++   +I     GR  A  G +  + E                NI+
Sbjct: 334 NDSKATNADAAARALASFDRIYWIAGGRAKA--GGISSLDEYFP-------------NIA 378

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
             +L G         L   +    S T+      
Sbjct: 379 KAFLIGEAAEEFAKTLDGHVPYAVSGTLTQAVRD 412


>gi|222445483|ref|ZP_03607998.1| hypothetical protein METSMIALI_01122 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435048|gb|EEE42213.1| hypothetical protein METSMIALI_01122 [Methanobrevibacter smithii
           DSM 2375]
          Length = 511

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 50/255 (19%)

Query: 148 GVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            +P+  +R+  DV  GI E+G     G I  +         +IT I P HL++  G  E 
Sbjct: 156 YIPILQSRLNGDV--GILEVGTFGVPGTIERIVGNSELTSGLITNITPDHLNDLGGFMEY 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------------ 254
           A  KAE  +GL     + +N  D     L  + +  G   I +FG  +            
Sbjct: 214 AHVKAEFIKGL-AGKQLIVNGQDPTIMGLLRELNFEG--EIITFGVDEMPVGVASKECVC 270

Query: 255 -------------------------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                                      D+        +     E+    + +EV     G
Sbjct: 271 GKTIDVKEIISGSGYYLCECGLTTPQLDYIATNINLKNR--TFELHTPDEKLEVKMLLEG 328

Query: 290 YHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            H   N++  +      L    D  +++++ F    GR ++      +         +  
Sbjct: 329 IHNVYNVVGVIVAAHEFLKLPYDKILESIATFGGVSGRMEKVASIGEKDVVV----DFAH 384

Query: 349 NPASMKAAISVLSQI 363
           NPA ++  +    ++
Sbjct: 385 NPAGVETVLREFKKL 399


>gi|226321051|ref|ZP_03796594.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
 gi|226233575|gb|EEH32313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
          Length = 451

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 120/344 (34%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++ +     S       +  F +    DF  +    C+E    +V      +    +
Sbjct: 221 QDQAYCKYF---SKFKSKARVILFSEFNPCDFD-QDIFYCNEG---KVYFNDSLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++       + +  +G   R     +       +++ 
Sbjct: 274 SRAVFIVPKVI-TFFVSYYLNIDLNR---TGQILNNFKGIEHRLEFVKSVQNVMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|168177452|ref|ZP_02612116.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
 gi|182670399|gb|EDT82373.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
          Length = 873

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 141/384 (36%), Gaps = 58/384 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA------------CIGSYNNHIGVPLTLA 154
              II+ITG+ GKTTT  ++   LS   K               CI + +          
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSISGKKVGMTTTGGIYINNKCINNGDTTGYYSAKTV 535

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAE 212
               +V+  + EL     G I+         + +IT +   H  L + + +E++A  KA 
Sbjct: 536 LTNKEVEVAVLELA--RGGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKAL 593

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCS 267
           + E ++K G + +N DD     +  +  +     I  F K+KN          +      
Sbjct: 594 VGEAVKKDGYVVINADDEASINIINRMKS----KIILFTKNKNNPIIPQYLDNKNLVLYL 649

Query: 268 EQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +   + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L  
Sbjct: 650 DGDTIYLKKINKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGIDVNTIRQGLES 709

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F  +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G   
Sbjct: 710 FSNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP- 763

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYS----- 427
             G+ + S  + +  +    N  ++++       G     + D L + I    +      
Sbjct: 764 --GDRTNSSTLKVGNICGE-NFDYIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLN 820

Query: 428 ---ETMDGLFLFIQSSLVDGDVVV 448
              +  + L   I+SS   GD+V+
Sbjct: 821 IILDEEEALKKAIESS-NPGDLVI 843


>gi|167627721|ref|YP_001678221.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597722|gb|ABZ87720.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 561

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 132/406 (32%), Gaps = 63/406 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM---PVDVDF 162
                + +TG+ GKTTT  +      +  K      +    +   L        P    F
Sbjct: 170 YDIPAVIVTGTNGKTTTVRLTDYICRTAGKLTGYTSTDWVKVNDELIDEGDYSGPTGHQF 229

Query: 163 G-------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
                   +  L  +  G ++        + A +T ++  HL       + E+A AKA +
Sbjct: 230 VLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKAIV 289

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLR--KWKQCSEQS 270
           F  + K     +N D+ + +    K      K I +    ++  D+ L    +    E  
Sbjct: 290 FRTMGKDSHAVINLDNFYMKQQFDKLSC--AKIIVTQDPDQHDMDYYLSKADYACVVENG 347

Query: 271 WMEVQLQGKSMEVVHH---------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                +  KS + +           G   H  +N ++ + +   L  D D   KAL  + 
Sbjct: 348 IFT-WIDKKSKKQILPVVDAPLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKALGSYK 406

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +  R R  + +    +    Y  N A M+A ++++        G++  ++G     
Sbjct: 407 N-DPKVNRGRANIFEFDNKVAVLDYAHNEAGMEALLNMIKAYDK--GGKKYLMIGT---T 460

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---------- 431
           G+  +     + +++  + I  V +       L+ A P  +     + ++          
Sbjct: 461 GDR-KYLISGINDIILKHGIDFVVIK-ETEKYLRGAKPLELPTLIRDDLERKGFDISKTY 518

Query: 432 ----GLF--LFIQSSLVDGDVVVVKSSNSC-----GFYRLINLLLE 466
                L    +I   L D D+                  + N L  
Sbjct: 519 ISHGELIGVKYILDMLEDNDI-------GIFCCQAELEEVANYLEN 557


>gi|50086604|ref|YP_048114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter sp. ADP1]
 gi|49532578|emb|CAG70292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. ADP1]
          Length = 453

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 134/412 (32%), Gaps = 54/412 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V     +   +  +S P F  D VL                 ++ + G+
Sbjct: 67  VGNAMKRGIDAV--EYMLNEGLPYISGPQFLADHVLQ-------------GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +  + +    D  +   E          
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGDGKYFCVEADEYDSAFFD 168

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-----NYDD 229
             +  V   P  A++  +   H   F  +  I      +   +   G I       N DD
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGCIITPVTETNIDD 228

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
               +L        ++T       K  D Q+   + CS+ S  +V   G    EV  +  
Sbjct: 229 ----VLAMGCWTPVVRTSL-----KANDAQISAEQLCSDGSHFKVLEHGVVQGEVKWNMT 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L T+     +   ++ A +ALS F   + R +             + + +  
Sbjct: 280 GQHSVANALATIAAAQHVGVTIEQACEALSNFGGVKRRMELLDTVRG----VEVYDDFAH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWL 406
           +P +++  +         GE R  A++    E    +     H +     S      V  
Sbjct: 336 HPTAIETTLE--GARKRLGERRLWAII----EPRSNTMRMGSHKE-GLAHSARLADEVIW 388

Query: 407 SGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                L   D  P     + H   S +++ +   I     DGD VV+  SN 
Sbjct: 389 YQPEGLD-WDLQPVIDAATNHAQVSRSLEDIIHRITQEAADGDAVVIM-SNG 438


>gi|325844609|ref|ZP_08168252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
 gi|325489034|gb|EGC91421.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
          Length = 449

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 131/413 (31%), Gaps = 48/413 (11%)

Query: 49  PHYDGHDFILH---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA------LNKLA 99
            + D  + +      +  G  L +++ D    + +  IP   V  +  A      +    
Sbjct: 45  ENEDAKEMVAEGFEVITGGHPLELLDRDFDLIVKNPGIPYLKVPLLKRAQELKIPIITEV 104

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A    +A  I ITG+ GKTTT  ++   L          G+      V   +A++   
Sbjct: 105 ELAFEICEAPFIGITGTNGKTTTTTLIYEMLKESTLNPLIAGNIGE---VATEVAKVAQA 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    L  +     L RP I+++  I  AHL     ++E   AK  + +    
Sbjct: 162 NQVLVTELSSFQLMGM----PLFRPRISLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTS 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 N +D        ++ A  I   +S  +     + L       E+  ++V+    
Sbjct: 218 DDYCVYNSEDDVIVEGIKQTKATCIP--FSLSEKVEGAYILEGAVYFKEEWIIDVK---- 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  Q++L  + +  +   D++     L  F   +    R +        
Sbjct: 272 ----DILLKGDHNLQDVLGAVAVSLLYGCDLEAIRTVLKRFAGVK---HRLQFVGEIRGV 324

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S   N  + + A+              I + G +    +LS         V    
Sbjct: 325 KYYNNSKATNIIATQTALKAFDS-------PIILIAGGLDRGHDLS-------GLVPYFN 370

Query: 400 NISHVWLSGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            I  +   G       AL D     +     + +D          + GD+V+ 
Sbjct: 371 KIKSIVTYGETKHRFKALAD--EHLMPCTVYDHLDQAVEDAYEQAIAGDIVLF 421


>gi|284051570|ref|ZP_06381780.1| cyanophycin synthetase [Arthrospira platensis str. Paraca]
          Length = 871

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 120/344 (34%), Gaps = 40/344 (11%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
            +V GA+  +       S+  I+++TG+ GKTTT  +L   +    K      +   +I 
Sbjct: 445 RNVAGAVMDMLFPGSTPSRIPILSVTGTNGKTTTTRLLAHIMKQTGKVVGYTTTDGTYIG 504

Query: 148 ---------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                      P +   +  D    +  L  +  G +R         I V+  +A  HL 
Sbjct: 505 DYMAEPGDNTGPQSAHLILCDPTVEVAVLECARGGILRSGLGFDTCDIGVVLNVAADHLG 564

Query: 199 --NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             +   IE++A  K+ + E +   G   LN DD     + A+  A     +  F  + + 
Sbjct: 565 LGDIDTIEQMAKVKSVVAEAVSDRGYAILNADDPLVAAMSARVKA----QVAYFSMNPDN 620

Query: 257 DFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +R  +     +  E                Q  ++ +   G+   M  N L      
Sbjct: 621 EIIVRHTEAGGLAAVYENGYLSILKGDWTLRIEQAVNVPLTMGGMAPFMIANALAACVAA 680

Query: 304 SILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 ++    AL+ F    +    R        +  LID  Y  NPAS +A    LS 
Sbjct: 681 FAQGVKIEHIRTALATFIASADQTPGRMNLFNMGSYHALID--YAHNPASYEA----LSG 734

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              +  G RI V+G     G+      + L + LS      + +
Sbjct: 735 FVNNWPGPRIGVVGGP---GDRRDEDFVTLGK-LSAKMFDRIIV 774


>gi|326315603|ref|YP_004233275.1| UDP-N-acetylmuramate [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372439|gb|ADX44708.1| UDP-N-acetylmuramate [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 473

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 122/399 (30%), Gaps = 54/399 (13%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  +     ++A+ G+ GKTTT  ML   L          +G      GV   L    
Sbjct: 102 WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWILECAGLQPGFLVGGVPLDFGVSARLGAAQ 161

Query: 158 VDVDF---------GIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
             V            + E            +  V  RP  AV+  +   H   F  +  I
Sbjct: 162 RPVAQDGPAGGAPLFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAI 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 +   +  +G +  N      E L    H      + SFG +  +DF  R     
Sbjct: 222 ERQFHHLVRTVPPSGRVVFNG---LEESLARVLHQGCWSGVASFG-AAVSDFTAR----- 272

Query: 267 SEQSWMEVQLQG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            E    +V   G     +E    G+  H   N L  +     +      A  AL  F   
Sbjct: 273 GEPQAFDVLRGGHAVGRVEWELSGV--HNQLNALAAIAAADHVGVAPAEAAAALGRFRNV 330

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV--------- 374
           +   +R       G   + D+ +  +P +++  +  L +     + R +A          
Sbjct: 331 K---RRMELRGTAGGVAVYDD-FAHHPTALRTTLDGLRR-RVGPDARILAAFEPRSNTMK 385

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LG M             L   L   +++    +G    A +   P       +  +  L 
Sbjct: 386 LGTMK----------SQLPWALEAADLAFCHTAGLDWDAAEALAPLGSRACTAGDIATLV 435

Query: 435 LFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEEFPA 470
             I ++   GD VV     S       RL+  L E  P 
Sbjct: 436 ERITAAARPGDHVVCMSNGSFGGIH-ARLLGALAERAPQ 473


>gi|195941718|ref|ZP_03087100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi 80a]
          Length = 451

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    DF  +    C+E    +V      +    +
Sbjct: 221 QDQAYYKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNDNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++   + L+ F   E R +  +   N       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNRTGQILNNFKSIEHRLEFVKSVQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|307298495|ref|ZP_07578298.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915660|gb|EFN46044.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 447

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 89/301 (29%), Gaps = 35/301 (11%)

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
           +S L E        +P  AVIT +   HL ++    + + +        +     +  N 
Sbjct: 153 VSELDESDGFFASFKPDYAVITNVRGDHLEHYDNSFDNLKNHFRYFSRSV--GKLLVTNA 210

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHH 286
           DD   E +   +         +FGK +   ++                   + +      
Sbjct: 211 DDPASERIFTDT--------LTFGKDRG-YYRFTDRSTGIMNQTFRCFRGNEDLGLFKLM 261

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDES 345
             G     N    + +   +   +++   +L  +   +   +R+       F  L   + 
Sbjct: 262 IPGEFNVYNATAAIALTHEMGVPIESIKNSLESYRSVD---RRFTFRGLDDFRNLFFFDD 318

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMC-------EMGELSQSFHIDLAEVLSL 398
           Y   P  +    + +        G+ + V+           E G  + S     A  + +
Sbjct: 319 YAHTPDEIS---NTIRGAREFFPGKNVIVVFQPHRYSRLVRENGRFANSL--KDATEVCV 373

Query: 399 YNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           + +   +  G + +   + L       +   ++     +  +++       V++   +  
Sbjct: 374 FKLYEAYEKGQYAIDETEVLKGLSSYGVPAVHAVNYSEILEWLEK--KRDAVILFLGAGD 431

Query: 455 C 455
            
Sbjct: 432 I 432


>gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
 gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
          Length = 477

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 118/390 (30%), Gaps = 45/390 (11%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +  +     +PV+G  ++   L       R    A  +A+TG+ GKTTT  ML   L 
Sbjct: 89  KPLFQAAAEADVPVWGDVELAWRL-------RGPDAAPWLAVTGTNGKTTTVRMLASILE 141

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +     A +G+    +   + L     DV     EL    L         +R   A +  
Sbjct: 142 AAGLRTAAVGNIGVSLLDAV-LGEETYDV--LAVELSSYQL----HWAPSLRADSAAVLN 194

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +AP HL     ++  A+ K  ++EG         N  D   E L  ++          F 
Sbjct: 195 LAPDHLDWHGSMDAYAADKGRVYEG--NRVACVYNAQDPATEDLVREADVEEGCRAIGFT 252

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILT 307
                  QL                Q ++ E       +    H   N L    +     
Sbjct: 253 LGTPGPSQLGVVDGILVDRAFVANRQKQAQELAQVEDVNPSAPHNIANALAAAALARAFG 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    L  F        R     +      ID+S   N  + +A+++         
Sbjct: 313 VRPSAVRDGLRAF---RPDAHRIEHVADVAGVAYIDDSKATNTHAAEASLAAYDP----- 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------ 421
               I  +      G    +     A+ L       V L G     +++AL R       
Sbjct: 365 ----IVWIAGGLAKGATFDALVTGAAKRLR-----GVVLMGADRALIREALARHAPEVPV 415

Query: 422 IHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           + +  ++T  M G           GD V++
Sbjct: 416 VDLERTDTGAMSGAVREAARLARPGDTVLL 445


>gi|83858729|ref|ZP_00952251.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853552|gb|EAP91404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Oceanicaulis
           alexandrii HTCC2633]
          Length = 438

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 111/344 (32%), Gaps = 46/344 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I +TG+ GK+TT  +L   L ++       G+    +           D +  + EL 
Sbjct: 108 TVIGVTGTKGKSTTSSLLHHMLKALDVNAVLAGNIGEPVID------TSEDAEIVVLELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 I  L H   P   +   +   H     G+E+    KA +   L+      ++  
Sbjct: 162 SYQ---IADLVHA--PDWFIFLNLLNDHAPWHRGVEQYRRDKARL-AMLDPNARGVMSAR 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           DS    L      +       + +S+   F               +    ++   +    
Sbjct: 216 DSRLNAL-----FVHRPNTVWYDQSEG--FHAPDGV---------IHHGAEAWGRIPALP 259

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N    L ++  L      A ++LS F   +G   R            ID++   
Sbjct: 260 GAHNAANACAALAVIEGLGLSAYEAFESLSSF---KGLAHRLETVHTLNGVDFIDDTLCT 316

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLS 407
            P S   A++               +LG     GE  +  +  LAE L     I  +   
Sbjct: 317 TPQSCLLALAAFPDRPIS------LILG-----GEDREQDYAPLAEGLRDETRIKAIVTI 365

Query: 408 GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVV 448
             +  A+ +AL    H     Y    +        +L DG +V+
Sbjct: 366 PENGPAIIEALKSGPHADITTYEPDFELAVKRAYEALPDGGIVM 409


>gi|241668293|ref|ZP_04755871.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876825|ref|ZP_05249535.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842846|gb|EET21260.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 561

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 132/406 (32%), Gaps = 63/406 (15%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM---PVDVDF 162
                + +TG+ GKTTT  +      +  K      +    +   L        P    F
Sbjct: 170 YDIPAVIVTGTNGKTTTVRLTDYICRTAGKLTGYTSTDWVKVNDELIDEGDYSGPTGHQF 229

Query: 163 G-------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
                   +  L  +  G ++        + A +T ++  HL       + E+A AKA +
Sbjct: 230 VLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKAIV 289

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLR--KWKQCSEQS 270
           F  + K     +N D+ + +    K      K I +    ++  D+ L    +    E  
Sbjct: 290 FRTMGKDSHAVINLDNFYMKQQFDKLSC--AKIIVTQDPDQHDMDYYLSKADYACVVENG 347

Query: 271 WMEVQLQGKSMEVVHH---------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                +  KS + +           G   H  +N ++ + +   L  D D   KAL  + 
Sbjct: 348 IFT-WIDKKSKKQILPVVDAPLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKALRSYK 406

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             + +  R R  + +    +    Y  N A M+A ++++        G++  ++G     
Sbjct: 407 N-DPKVNRGRANIFEFDNKVAVLDYAHNEAGMEALLNMIKAYDK--GGKKYLMIGT---T 460

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---------- 431
           G+  +     + +++  + I  V +       L+ A P  +     + ++          
Sbjct: 461 GDR-KYLISGINDIILEHGIDFVVIK-ETEKYLRGAKPLELPTLIRDDLERKGFDISKTY 518

Query: 432 ----GLF--LFIQSSLVDGDVVVVKSSNSC-----GFYRLINLLLE 466
                L    +I   L D D+                  + N L  
Sbjct: 519 ISHGELIGVKYILDMLEDNDI-------GIFCCQAELEEVANYLEN 557


>gi|329944585|ref|ZP_08292725.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328530138|gb|EGF57021.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 514

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 115/376 (30%), Gaps = 45/376 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L         R     + +TG+ GKTTT  ML+  L +   T   +G+    IG P   A
Sbjct: 118 LAWRLQQDSRRPDVPWLTLTGTDGKTTTVGMLSAILEAQGLTAPAVGN----IGTPAIEA 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D    EL    L      T  + P  +    +A  HL    G E  A+ KA ++
Sbjct: 174 VLAGSADALAVELSSFQL----HTTRTLSPLASACLNLAADHLDWHGGREAYAADKARVY 229

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                      N  D   + +  ++  +       F  +     Q+   +          
Sbjct: 230 SRTRL--AAVYNVADDATQDMVRQADVVEGCRAVGFTLTTPGLGQVGMVEDLLVDRAFHA 287

Query: 275 QLQ------GKSMEVVHHGIG-------YHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           + +        S ++ H   G        H+  + L    +      D +  +   +   
Sbjct: 288 ERRSSGIELATSADLAHLAPGGRTENLPSHLLADALAAAALARAAGVDAEAVV---AGLR 344

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                  R          T +D+S   NP S +AA++ L    P G G  I         
Sbjct: 345 AYSPGAHRIVTVAEADGVTWVDDSKATNPHSAEAALTSL----PRGTGVWIC-------G 393

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI---- 437
           G+   +   DL  V+  +    V +       L      +  +  +   D     I    
Sbjct: 394 GDTKGAEFFDLVRVVRPHLRGAVVIGKDQSDILAALAQEAPGLPVARVSDASPEDISAAA 453

Query: 438 ----QSSLVDGDVVVV 449
                +    GD V++
Sbjct: 454 VEAAGAMARSGDTVIL 469


>gi|269468137|gb|EEZ79844.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 432

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 91/271 (33%), Gaps = 28/271 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLA 154
               +A  +     ++AI+G+ GKTTT  ML+  L  +       IG    + GV   L 
Sbjct: 90  GAQWLAEEVLHNKWVLAISGTHGKTTTASMLSWILECAGYNPSFLIGGVVENFGVSSRLT 149

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               D +F + E            +  +   P   VI  +   H   F  + +I      
Sbjct: 150 ----DSNFFVIEADEYDTAFFDKRSKFIHYHPKTLVINNLEFDHADIFDSLSDIQKQFHH 205

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSW 271
           +   +   G I    D               I  +   G  S +     +K       S 
Sbjct: 206 LIRTIPSDGLIIHPKD------------TQAINEVLEQGLWSSDQTLPAQKLNTTDIGSS 253

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E+    +   V  H +G H  QN L  +     +    D A +AL+ F   +   +R  
Sbjct: 254 FEI----EGAMVNWHLLGEHNMQNGLGAIYAAHHIGIPFDVACEALNTFKGVK---RRLE 306

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   TL D+ +  +P ++K  +S L  
Sbjct: 307 IKHQTNAVTLYDD-FAHHPTAIKTTLSGLRA 336


>gi|281413643|ref|ZP_06245385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 475

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 85/282 (30%), Gaps = 25/282 (8%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DV  A      A R  +    + +TG+ GKTTT  M+   L +  +     G+    +  
Sbjct: 79  DVELAWRLRERAGRKTAD--WVCLTGTNGKTTTVTMVEAILRADGRRAVACGNVGTPVLD 136

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +   R P   D    EL    L      TH + P  + +  +A  H+     +EE A+A
Sbjct: 137 AI---RDPQGFDVLALELSSFQL----HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAA 189

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K +++           N  D     L  ++          F         L         
Sbjct: 190 KGKVYANTRV--ACVFNEQDPLTRTLVERADVQEGCRAIGFTTDTPG---LSDIGVVDGI 244

Query: 270 SWMEVQLQGKSMEVVH--------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                 L  +  E +              H   N      +   +        + L  + 
Sbjct: 245 LVDRAFLDNRRHEAIALAERADLGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYD 304

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             E    R +          +++S   NP +  A+++  S +
Sbjct: 305 RGE---HRIQLVATSRDIMWVNDSKATNPHAADASLAAFSSV 343


>gi|257058868|ref|YP_003136756.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
 gi|256589034|gb|ACU99920.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
          Length = 877

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 39/319 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLTLAR 155
           S+  I+A+TG+ GKTTT  +         K      +   ++            P +   
Sbjct: 486 SRIPILAVTGTNGKTTTTRLTAHIYRQTGKVVGYTTTDGIYLGEYLVEKGDNTGPFSANV 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R         + ++  +A  HL   + + IE++A  K+ I
Sbjct: 546 ILKDPTVEVAVLETARGGILRSGLAFDTCDVGIVLNVAADHLGLGDINTIEQMAKVKSVI 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E +   G   LN DD     +  +  A     +  F  S +        ++    +  E
Sbjct: 606 AEVVHPDGYAILNADDPLVSAMAERVKA----KVAYFSMSPDNPIIENHLRRGGLAAVYE 661

Query: 274 VQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                           +  ++ +   G+   M  N L           D++   + +  F
Sbjct: 662 NGYLSILEGHQTLRIEEAANIPMTMGGMAPFMIANALAACLATFAQGVDIEMIRQGVRTF 721

Query: 321 H-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R        +  L+D  Y  NPA  +A          + +G R+ V+G   
Sbjct: 722 KASVNQTPGRMNLFNLGDYHALVD--YAHNPAGYEAV----GGFVRNWKGERLGVVGGP- 774

Query: 380 EMGELSQSFHIDLAEVLSL 398
             G+      I L ++ + 
Sbjct: 775 --GDRRDEDLILLGKIAAQ 791


>gi|218245822|ref|YP_002371193.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
 gi|218166300|gb|ACK65037.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
          Length = 877

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 39/319 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLTLAR 155
           S+  I+A+TG+ GKTTT  +         K      +   ++            P +   
Sbjct: 486 SRIPILAVTGTNGKTTTTRLTAHIYRQTGKVVGYTTTDGIYLGEYLVEKGDNTGPFSANV 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R         + ++  +A  HL   + + IE++A  K+ I
Sbjct: 546 ILKDPTVEVAVLETARGGILRSGLAFDTCDVGIVLNVAADHLGLGDINTIEQMAKVKSVI 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E +   G   LN DD     +  +  A     +  F  S +        ++    +  E
Sbjct: 606 AEVVHPDGYAILNADDPLVSAMAERVKA----KVAYFSMSPDNPIIENHLRRGGLAAVYE 661

Query: 274 VQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                           +  ++ +   G+   M  N L           D++   + +  F
Sbjct: 662 NGYLSILEGHQTLRIEEAANIPMTMGGMAPFMIANALAACLATFAQGVDIEMIRQGVRTF 721

Query: 321 H-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R        +  L+D  Y  NPA  +A          + +G R+ V+G   
Sbjct: 722 KASVNQTPGRMNLFNLGDYHALVD--YAHNPAGYEAV----GGFVRNWKGERLGVVGGP- 774

Query: 380 EMGELSQSFHIDLAEVLSL 398
             G+      I L ++ + 
Sbjct: 775 --GDRRDEDLILLGKIAAQ 791


>gi|319777842|ref|YP_004134272.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171561|gb|ADV15098.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 907

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 112/339 (33%), Gaps = 50/339 (14%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            +V   +  L        +  I AITG+ GK+TT  ML+  L +   T     +   ++ 
Sbjct: 474 RNVARPVLDLLFRGGKDGRIPIFAITGTNGKSTTARMLSHILQANGATVGLTSTTGVYLN 533

Query: 149 VPLTLARM------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               +                  VD  + E      G +R         I  +  +   H
Sbjct: 534 GERIMTGDCSGPQSARIVLREPGVDVAVLECA--RGGILREGLAFDACDIGAVLNVHGDH 591

Query: 197 LS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           L       I+++A  K+ + E + + G   LN DD     +  ++       I  F    
Sbjct: 592 LGLRGIDTIDDLAEVKSVVVESVRRGGWSILNADDIHTSAMSREAGG----RICYFSLLN 647

Query: 255 NADF------------QLRKWKQCSEQSWMEVQLQGKS--------MEVVHHGIGYHMAQ 294
            +D+            +    ++  +   + +   G+S        +     G       
Sbjct: 648 RSDWPDFLCSHVAEGGRAVTRERSRDGWDIVIHEDGESMFLMDVDEIPATFEGAAEFNVA 707

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           N L  + +         T   AL+ F    E    R       GF T++D  Y  NP  +
Sbjct: 708 NSLAAVAMAHCHDIPAATIRAALAEFTTSFEHSPGRLNVFDGHGFRTIVD--YAHNPEGL 765

Query: 354 KAAISVLSQISPHGEGR--RIAVLG-----DMCEMGELS 385
           KA   ++S +    +     +A+ G     D+ EMG ++
Sbjct: 766 KALGKLVSHMKRGYQRTIGLVAIPGDRRDCDIREMGAVA 804


>gi|187930159|ref|YP_001900646.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           pickettii 12J]
 gi|187727049|gb|ACD28214.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ralstonia pickettii
           12J]
          Length = 546

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 130/399 (32%), Gaps = 64/399 (16%)

Query: 83  IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +PV+G  ++   AL  L  A        ++AITG+ GKTTT  +    +    KT    G
Sbjct: 145 VPVWGEIELFARALAGLKAA--QGYAPRVLAITGTNGKTTTTALTGALVQRAGKTVGVAG 202

Query: 142 SYNNHIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
           + +      L+    A    DV   + EL    L      TH +    A +  I   HL 
Sbjct: 203 NISPSALDKLSECVDAGTLPDVW--VLELSSFQL----ETTHSLEADAATVLNITQDHLD 256

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E  A+AK  IF          LN  D+      +K+         +FG  +    
Sbjct: 257 WHGTMEAYAAAKGRIF---GANTVRVLNRQDAAVMAFASKNGGD-----ITFGIDEPGTP 308

Query: 259 QLRKWKQCSEQSWME---------------------------VQLQGKSMEVVHHGIGYH 291
                 +     W+                            V+L+           G H
Sbjct: 309 DALGLLRDGGMPWIVLAEVEEDDLPKPTRRKKGDAAPAAPVPVRLKRLMPADALRIRGLH 368

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N +  L +   +   V   +          G   R             D+S   N  
Sbjct: 369 NATNAMAALALCRAIGLPVSALLHG---LRDYAGEPHRVELIAAFDDIEFFDDSKGTNVG 425

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  AA+S LS+         + + G   +  + S      LAE ++ Y    V L G   
Sbjct: 426 ATVAALSGLSK-------HVVLIAGGDGKGQDFSP-----LAEPVAQY-ARAVILIGRDA 472

Query: 412 LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +++AL    + +  + T++   L   +    GD V++
Sbjct: 473 PLIREALANTGVALVDAPTLEAAVLEAAAHAQPGDAVLL 511


>gi|325578748|ref|ZP_08148795.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159572|gb|EGC71704.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 451

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 136/407 (33%), Gaps = 30/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     + +        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 65  MVIVGNAMKRGNSCVEYVLDNALPYTSGPQWLHDHLLRNRWVLAVSGTHGKTTTTGMLTW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I      +    + +F + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGTSARLGESEFFVIEADEYDTAFFDKRSKFVHYNPKT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I+  H   F  +  I      +   +  TG   L++ D               + 
Sbjct: 182 LIINNISFDHADIFDDLHAIQRQFHHMIRTIPSTGR-VLSFADEQSVKETLNMGCWSEQQ 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           +   GK   A+      +  ++ S   V   G+ + EV  + +G H   N LM +     
Sbjct: 241 LIGKGKEWFAE------RITNDCSEFAVFHHGEKVAEVKWNIVGQHNMHNALMAIAAAYH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A +AL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 AGVKIEDACQALGSFINAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            G  R +AVL    E    +     H D +A  L   +   +         + +   + +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKDEIAPALGRADAVFMLQPDNIPWDVAEIAGQCV 405

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
              HY+  +D L   I +     D ++V    S       ++++ L 
Sbjct: 406 QPAHYTGNVDKLVDMIVAEAKPTDHILVMSNGSFGGIHQ-KILDRLK 451


>gi|291612524|ref|YP_003522681.1| UDP-N-acetylmuramate [Sideroxydans lithotrophicus ES-1]
 gi|291582636|gb|ADE10294.1| UDP-N-acetylmuramate [Sideroxydans lithotrophicus ES-1]
          Length = 457

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 133/399 (33%), Gaps = 43/399 (10%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYN 144
               ++  A     +A  L     ++ + G+ GKTTT  ML   L          IG   
Sbjct: 85  ILNRNLPYASGPQWLADTLLRDKWVLGVAGTHGKTTTTSMLAWILEYAGLNPGFLIGGVP 144

Query: 145 NHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPA 195
            + G+   L       +       F + E            +  V   P  A++  +   
Sbjct: 145 QNFGISARLPSPQPSPSGRGGHGGFFVIEADEYDTAFFDKRSKFVHYHPRTAILNNLEFD 204

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIYSFGKSK 254
           H   F  +  I +    +   +   G +  N  +DS   +++        K    FG   
Sbjct: 205 HADIFPDLVAIETQFHHLVRTVPGNGLVVCNGREDSLARVIQRGCWTPVEK----FGSDD 260

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             +         +EQ  +  ++QGK   +    +G H   N L  L         V   +
Sbjct: 261 GWNIDA------NEQVSLNGKIQGK---LQWDLLGEHNRLNALAALAAARHAGVPVAQGL 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            ALS F   +   +R          T+ D+ +  +P ++   ++ L      G  R +AV
Sbjct: 312 AALSEFKNVK---RRMEVRGTVNGITVYDD-FAHHPTAIDTTVAGLR--RKVGRARILAV 365

Query: 375 LGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLS-GFHVLALKDAL-PRSIHVHYSET 429
           L         S +  + + +     SL +    +   G      + AL P        + 
Sbjct: 366 LE------PRSNTMKLGVMKDALPGSLKDADLTFCYAGNLGWDARGALAPLGDKAVVKDE 419

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           ++ L   I ++   GD ++V  SN  GF  +   LL+  
Sbjct: 420 LNDLIESIVAAAKSGDQILVM-SNG-GFGGIHEKLLKRL 456


>gi|261349957|ref|ZP_05975374.1| UDP-N-acetylmuramate-alanine ligase [Methanobrevibacter smithii DSM
           2374]
 gi|288860740|gb|EFC93038.1| UDP-N-acetylmuramate-alanine ligase [Methanobrevibacter smithii DSM
           2374]
          Length = 511

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 48/242 (19%)

Query: 161 DFGIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           D GI E+G     G I  +         +IT I P HL++  G  E A  KAE  +GL  
Sbjct: 167 DVGILEVGTFGVPGTIERIVGNSELTSGLITNITPDHLNDLGGFMEYAHVKAEFIKGL-A 225

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------------------------- 254
              + +N  D     L  + +  G   I +FG  +                         
Sbjct: 226 GKQLIVNGQDPTIMGLLRELNFEG--EIITFGVDEMPVGVASKECVCGKTIDVKEIISGS 283

Query: 255 ------------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-G 301
                         D+        +     E+    + +EV     G H   N++  +  
Sbjct: 284 GYYLCECGLTTPQLDYIATNINLKNR--TFELHTPDEKLEVKMLLEGIHNVYNVVGVIVA 341

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L    D  +++++ F    GR ++      +         +  NPA ++  +    
Sbjct: 342 AHEFLKLPYDKILESIATFGGVSGRMEKVATIGEKDVVV----DFAHNPAGVETVLREFK 397

Query: 362 QI 363
           ++
Sbjct: 398 KL 399


>gi|119487890|ref|ZP_01621387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
 gi|119455466|gb|EAW36604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
          Length = 458

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 139/395 (35%), Gaps = 43/395 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LVVV+  +   I  L          +  + ++ +A R  +    + ITG+ GKTTT  ++
Sbjct: 66  LVVVSPGVPWDIPPLE---IARHRGIEIVGEMELAWRNLNAVPWVGITGTNGKTTTTALI 122

Query: 127 TIALSSIK---KTYACIGSYNNHIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTH 180
                +          IG+    + +        ++   VD+ I E+    +      + 
Sbjct: 123 AAIFKAAGLNAPACGNIGNAACELALEQQEIRALKIGKSVDWVIAEVSSYQI----ESSS 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            + P I V TT  P HL+    +E   + KA++   L+ +    +N DD +   L+  + 
Sbjct: 179 TLAPKIGVWTTFTPDHLNRHHTLENYYNIKAKL---LKNSEIQVINGDDPY---LRQNAD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMT 299
                  ++  + K+            E  ++ +Q Q K +       +G H  QN+LM 
Sbjct: 233 QEWKNACWTSVQGKSKLIGNPDLGVYIENDYI-IQNQQKIIPLKTLKMVGKHNLQNLLMA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +   +     +A+S F        R     +      I++S   N  + +  ++ 
Sbjct: 292 VATARLAGIEPPAIEQAISNFPGVP---HRLEAVGSWQDINWINDSKATNYDAAQVGLAA 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +           I + G   + G+ +Q               + V L G         L 
Sbjct: 349 VEA-------PVILIAGGEAKAGDDTQWLQ------TIQEKAAAVLLIGDAAEQFSQRLK 395

Query: 420 RSIH--VHYSETMDGLF---LFIQSSLVDGDVVVV 449
           +  +  V   ETM+        + S      VV++
Sbjct: 396 QVNYQTVEIVETMEKAIPKAAELASHFSAK-VVLL 429


>gi|163787488|ref|ZP_02181935.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877376|gb|EDP71433.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 443

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 114/346 (32%), Gaps = 31/346 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + AT++AITGS GKTTT  +    L          G+  +     +    +  D    + 
Sbjct: 100 TNATLVAITGSNGKTTTATLTHHLLKQELSV-GLAGNIGDSFAKQV----LDEDYKNYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           E+    L +I       +P IAV+T I P HL  +    E   ++K  + E   +     
Sbjct: 155 EISSFQLDDI----IDFKPKIAVLTNITPDHLDRYDYKFENYIASKFRVVENQTEDDYFI 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            + DD   E     +     K  +S  K       +            ++ +  +++   
Sbjct: 211 YDSDDQVIEEWLQNNSIQSKKLPFSLTKVVEQGAYIDNNNIIITIDNNQIIMPTENIT-- 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N +    +  +L     T  ++L  F   E    R    L       I++
Sbjct: 269 --LEGKHNVKNAMAASTVAHLLKIRKQTIRESLENFQGVE---HRLEHVLKINKVQYIND 323

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A+  +   +    G            G    + + +L   ++   +  +
Sbjct: 324 SKATNVNATYFALDSMDAPTVWIVG------------GVDKGNDYKELFPFVNE-KVKAI 370

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              G     L +A    + V   +E M             GD V++
Sbjct: 371 ICLGVDNAKLFEAFGNMVDVIIETEYMSEAVKIAYKVANTGDNVLL 416


>gi|227497588|ref|ZP_03927811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832957|gb|EEH65340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
          Length = 506

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 116/382 (30%), Gaps = 52/382 (13%)

Query: 96  NKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +++ +A RL+         I +TG+ GKTTT  ML+  L++       +G+    IGVP 
Sbjct: 113 SEIELAWRLQRSTHPEVPWITVTGTDGKTTTVGMLSAILTAAGLEAPAVGN----IGVPT 168

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                         EL    L      TH + P  A    ++  HL    G+E  A+ K+
Sbjct: 169 ISVVAAGGAQALAVELSSFQL----HTTHSLSPLAAACLNLSADHLDWHGGMEAYAADKS 224

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--------DFQL-RK 262
            ++           N  D     +  ++  +       FG             D  + R 
Sbjct: 225 RVYTH--AQRAAVYNLADPATLRMVEQADVVEGCRAIGFGLGAPGLGQVGLVEDVMVDRA 282

Query: 263 WKQCSEQSWMEVQL--------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           W         E+           G  ++          A            + AD+    
Sbjct: 283 WHPRRHHEAAELATLADLAHLAPGGEVD-RLPAHIAADALAAASLALAHPQVQADLGAVA 341

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + L  F        R          T +D+S   N  S +AA+S +             V
Sbjct: 342 RGLRAFT---PGAHRLVTVAEGAGVTWVDDSKATNAHSTQAALSSVR-----PGSAVWIV 393

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPRSIH-----VHYS 427
            GD           H  +A V      + V  +       AL+D  P             
Sbjct: 394 GGD-----TKGADLHELVARVRPYLRGAVVIGADPTPVLQALEDEAPDLPRRVVPAASAR 448

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           E ++       +   +GD V++
Sbjct: 449 EVIEEAVRQASAMAQEGDTVLL 470


>gi|224532736|ref|ZP_03673353.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
 gi|224512354|gb|EEF82738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
          Length = 451

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    DF  +    C+E    +V      +     
Sbjct: 221 QDQAYYKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNDNLIGSFSD 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++   + L+ F   E R +  +   N       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNRTGQILNNFKGIEHRLEFVKLVQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + + + L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIINILEKSSIQYFLFDSLREAVNYAFKISSPGDIVLF 423


>gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 486

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 107/370 (28%), Gaps = 44/370 (11%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR       +A+TG+ GKTTT  ML   L +     A +G+    +   + L
Sbjct: 109 GDVELAWRLRGPDSPPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIGVSLLD-IVL 167

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              P DV     EL    L         +R H   +  +AP HL     +   A+ K  I
Sbjct: 168 GETPYDV--LAVELSSYQL----HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRI 221

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           +EG         N  D   E L   +          F        QL   +         
Sbjct: 222 YEG--NQVACVYNAADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFV 279

Query: 274 VQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              Q  + E+      +    H   N L    +              L  F P      R
Sbjct: 280 TNRQKSAQELAEVADVNPPAPHNIANALAAAALARAYGVPPQAVRDGLRAFRPDP---HR 336

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +    + +D+S   N  + +A++              I  +      G       
Sbjct: 337 VEHVADVEGVSYVDDSKATNTHAAEASLGAYEH---------IVWVAGGLAKGATFDEL- 386

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD----------GLFLFIQS 439
                + +   +    L G     +++AL R  H      +D                  
Sbjct: 387 ----VLAAAPRLRGAVLIGADRALIREALAR--HAADVPVVDLDRTDTGAMAAAVREAAR 440

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 441 LARPGDTVLL 450


>gi|163846341|ref|YP_001634385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524106|ref|YP_002568577.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroflexus sp.
           Y-400-fl]
 gi|163667630|gb|ABY33996.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447985|gb|ACM52251.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroflexus sp.
           Y-400-fl]
          Length = 471

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 111/379 (29%), Gaps = 46/379 (12%)

Query: 84  PVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P    D    AL +                    I+ +TG+ GKTTT  ML   +     
Sbjct: 85  PAVRPDSPWLALARSHGVSIETEMTLFFRACPGPILGVTGTKGKTTTTLMLAAMVRQRYP 144

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                G+    I     LA++       + EL    L   R     + P  A++T +   
Sbjct: 145 DAVVAGNL--RISALEALAQIGPQTPV-VLELSSFQLE--RLGEAGLSPDYALLTNLGID 199

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-K 254
           HL+        A+AK +I    ++ G   L  +       +AK+   G + I SF  S  
Sbjct: 200 HLNWHGSFAAYANAKRQIMAHQDEDGIAVLPPE-------QAKTWGRGRRGIISFSLSDP 252

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            AD  +        +  +                G H   N L    +      +    +
Sbjct: 253 TADATVDADGYLRYRDVILAHHSD------LRLPGTHNLANALAAATLAYHFGIEPHEIV 306

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL      E    R            I+++   NP+         +       G  + +
Sbjct: 307 AALQSMTAVE---HRLELVATIDGVRYINDTTATNPS-------ATAAALATVAGPIVLI 356

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHYSETM 430
            G     G         LA+ ++    + V L G     L+       P+         +
Sbjct: 357 AG-----GADKDLDLAYLADTIAQGAAAVVLLQGSATPRLQTLLSQCAPQLPLAGPFADL 411

Query: 431 DGLFLFIQSSLVDGDVVVV 449
                  +S    G  +++
Sbjct: 412 STAVATARSLAQPGGAILL 430


>gi|260462088|ref|ZP_05810332.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031948|gb|EEW33215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
          Length = 466

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 108/348 (31%), Gaps = 38/348 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  I ITG+ GK+TT  +    L S  +     G+    IG  +     P      + E 
Sbjct: 114 APFIGITGTNGKSTTTALTAHILKSAGRDTQMGGN----IGRAVMTLDPPKPDRHYVVEC 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               +     L   + P   ++  + P HL     ++  AS K  +  G E   T  +  
Sbjct: 170 SSYQID----LAPSINPTAGILLNLTPDHLDRHGTMQHYASIKERLVAGSE---TAIIGI 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DDS+   +  +    G + I    +    D          E        +   +E +   
Sbjct: 223 DDSWCAQIAERLERAGRQVIRISKRLPLTDGYFADGSNLMEAVHGRYS-RVAFLEGIGSL 281

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H AQN L  +     +  ++       S      G   R      +     I++S  
Sbjct: 282 RGQHNAQNALAAVAACLRVGLELGEIQ---SGLESFPGLAHRMEQVGRKDHVLFINDSKA 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVW 405
            N  +   A+S  ++I     G          E G           E L  +   I+  +
Sbjct: 339 TNADAAAPALSSFNRIYWIAGGL-------PKEGG----------IEPLRGFFPRIAKAY 381

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV 449
           L G    A    L  ++    S T+              D    VV++
Sbjct: 382 LIGEAAPAFSATLGEAVPYEISGTLAAAVEHAARDAARDDSGEAVVLL 429


>gi|251778502|ref|ZP_04821422.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082817|gb|EES48707.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 872

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 159/453 (35%), Gaps = 67/453 (14%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  G     H F    +++  G  ++N  M+      +IP+  V                
Sbjct: 444 AAPGIRM--HHFPSKGIERNVGKAIIN--MMYGENPKNIPIVSVT------GTNGKTTTT 493

Query: 105 RSKATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R    +++  G SVG T+T          I     CI   ++          +  DVD  
Sbjct: 494 RLINHVLSKMGYSVGMTST--------EGIYVNNKCIHKGDDSGFNSAKTILLNRDVDIA 545

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTG 221
           + E   +  G IR         ++VIT I   HL     + +E+++  KA + E +++ G
Sbjct: 546 VLE--TARGGLIRKGLAYDIADVSVITNITNDHLGLDGINSMEQLSFVKALVGEAVKENG 603

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----- 276
              LN DD + + +  +  A  I     F K +N +   +         ++E        
Sbjct: 604 FTVLNADDKWSKTIINRIKANKI----FFSKYENNELIQKNISDGGIAIFIENDYIVVVN 659

Query: 277 --------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                       + + ++G+  +  +N++   G +  +  D     K +  F+     G 
Sbjct: 660 NHKKYSICSINDVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMDFNLNNNNG- 718

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+      G   ++D  Y  N    KA +S L++I    +   I V+G     G+     
Sbjct: 719 RFNIYEVDGRKIILD--YGHNIEGYKAVLSSLNKIKKDKD--LIGVIGIP---GDRCDDI 771

Query: 389 HIDLAEVLSLYNISHVWLS----------GFHVLALKDAL---PRSIHVHYS-ETMDGLF 434
            I++ ++ S   +  + +           G     LK+ +    ++  +H   + +  L 
Sbjct: 772 AIEIGKICSEM-LDKIIIKEDRDRRGREQGEIASLLKNGVLRENKNSKIHVCLDEIKALE 830

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      GD +VV          ++  +  +
Sbjct: 831 KALM-ISKKGDTIVV---FFEDLESIVKYIKNK 859


>gi|216264830|ref|ZP_03436822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221218094|ref|ZP_03589560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223888943|ref|ZP_03623534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224533660|ref|ZP_03674249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225549611|ref|ZP_03770577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
 gi|215981303|gb|EEC22110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221192042|gb|EEE18263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223885759|gb|EEF56858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224513333|gb|EEF83695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225369888|gb|EEG99335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
          Length = 451

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 123/344 (35%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++ +     S       +  F +    DF  +    C+E    +V      +    +
Sbjct: 221 QDQAYCKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNDNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++   + L+ F   E R +  +   N       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNRTGQILNNFKSIEHRLEFVKSVQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|167904393|ref|ZP_02491598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei NCTC 13177]
          Length = 504

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    +  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGVDFEFVGGAFSPALIDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 95  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 151

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 152 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TVHTFAPDAATILNITQDH 207

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 208 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 264

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 265 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 324

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 325 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|126442170|ref|YP_001060537.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 668]
 gi|166224754|sp|A3NDW6|MURD_BURP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|126221663|gb|ABN85169.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 668]
          Length = 504

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 95  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 151

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 152 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 207

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 208 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 264

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 265 ADGDYGLLRENGIAWLVEAIDRDAADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 324

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 325 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|84490005|ref|YP_448237.1| UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84373324|gb|ABC57594.1| predicted UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 489

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 65/444 (14%), Positives = 148/444 (33%), Gaps = 64/444 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASI---GSLSIPVFGVDD----VLGALNKLAVAARLRSKAT 109
           I  A +KG   ++       +I    +L+  +   +        ALN +       S   
Sbjct: 52  IEIANEKGVSCLITQNPHDDAISMAKALNFSLIVTEHIEYATAFALNTIVKEYAEDSFK- 110

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARM------PVDV 160
            +A+TG+ GK+TT  +L    S             S  N +  P   + +        ++
Sbjct: 111 -VAVTGTNGKSTTTHLLYTIFSDFNYDTYTNTDAESEGNTLIDPRVASELSDYYHKNNNI 169

Query: 161 DFGIFELGMSHLGEIRFLTH-------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           D    E+      +   + +        +     +IT  +  H++     + +    +  
Sbjct: 170 DVITLEVSEVQGWDDEIMKNHSNKMIRALDADSVIITNASMDHINLVKSFDNLLYEISGA 229

Query: 214 FEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQ 269
            + L   +K   + LNY+D     +           +  FG   +N    +   +     
Sbjct: 230 AKALLNGDKESLLVLNYEDENIRNMANIVSNQSNINVMFFGNYDENNILSVSYKEGVGIY 289

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S  E+ ++ K +         H  Q+++  L +      D    I++L  + P   R  +
Sbjct: 290 SGNELYVEQKDLPFN----SIHFIQDIMAALAVCIYRNMDRGRVIESLKNYKPLARRFIK 345

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R         +I + +  NP+ +   I   S++     G  + ++  +   G      +
Sbjct: 346 LR------ENPIIIDDFAHNPSGINLTIENGSKL-----GNNLFIVNAI--RGSRGDDIN 392

Query: 390 IDLAEVLSLY----------------NISHVWLSGFHVLALKDALPRSIHVHY--SETMD 431
            ++AE L                    ++H+         +   +    ++H+   E+++
Sbjct: 393 REIAEALVKSLKDRDNYTLLLTCSVDVVNHLNTVVDSEKNIFLEILEENNIHFMLFESLE 452

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC 455
              L + +   D DV+++  +   
Sbjct: 453 ESLLNVVNLASDDDVILLLGAQGM 476


>gi|121603914|ref|YP_981243.1| cyanophycin synthetase [Polaromonas naphthalenivorans CJ2]
 gi|120592883|gb|ABM36322.1| cyanophycin synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 862

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 138/396 (34%), Gaps = 54/396 (13%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A+      A    +  +IA+TG+ GKTTT  ++   L++         +   +I    T 
Sbjct: 455 AMIDELFPAGENGRIPVIAVTGTNGKTTTTRLIAHLLAAHGLRTGMTNTDGVYINGRQTD 514

Query: 154 AR------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP-AHLS-- 198
           +             M  DVD  +FE+     G +R      R  +AV+T I    HL   
Sbjct: 515 SGDCSGPKSARNVLMHPDVDAAVFEVA--RGGVLREGLGFDRCEVAVVTNIGSGDHLGLN 572

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
             + +E++A  K  I + +  TG   LN  D+    +           +  FG  ++   
Sbjct: 573 YITTVEDLAVLKRVIVQNVAPTGYAVLNAADAIVTEMAQACPG----KVIFFGADRHHPL 628

Query: 259 QLRKWKQCSEQSWME----VQLQGKSMEVV-HHGIGY-------HMAQNMLMTLGIVSIL 306
                 Q     +++    V  +G  +E +   GI            +N++  +     +
Sbjct: 629 MATHRAQGKRTVFVDGPMLVAAEGSRVERIALSGIPVTRAGSIGFQVENVMAAVAAAWAV 688

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               DT    L+ F             ++ G  T+I + Y  NP +M A ++ ++ +   
Sbjct: 689 NVSWDTIKSGLASFACDTHNAPGRFNVMDYGGATVIAD-YGHNPDAMLALVAAVNAMPAQ 747

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKD 416
                I+  GD  +    +Q+       V+       V L           G  +  L++
Sbjct: 748 RRSVVISGAGDRRDSDITNQT-------VILGAAFDDVILYQDAAQRGRADGEVMALLRE 800

Query: 417 ALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            L  +      + + G         + L  GD+ +V
Sbjct: 801 GLKGASRTQRIDEIRGEFVAIDTALARLQPGDLCLV 836


>gi|89896765|ref|YP_520252.1| hypothetical protein DSY4019 [Desulfitobacterium hafniense Y51]
 gi|89336213|dbj|BAE85808.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 115/402 (28%), Gaps = 87/402 (21%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II +TG+ GKTTT  +L   L +  KT+A      N   G+   L            ++ 
Sbjct: 55  IIMVTGTNGKTTTANLLAQILKADGKTFAFNQAGANLVTGITGALLANTGWGGRSKVKMA 114

Query: 169 MSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  + E         V P++A++T      L  +  ++        + + +     + LN
Sbjct: 115 LLEVDEATVPKFCQQVTPYVAIVTNFFRDQLDRYGELDTTIK---LVRDAIPPQTHLILN 171

Query: 227 YDDSFFELL-KAKSHAL--------------------------GIKTIYS---FG----- 251
            DD       + + H L                          G + +Y+   +G     
Sbjct: 172 ADDPLVAQFGRERIHTLYYGVEQTPDSKIYSTETREARFCPHCGAELVYTLYHYGQLGIY 231

Query: 252 ------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K        +  K   +     V    +         GY+   N L  +     
Sbjct: 232 ACPCGYKRPEPPVLAQNVKAGEDGIQFRV----EPTSYSITLQGYYNLYNALAAMTAAKR 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +        + LS F P+ GR +++         TL+      NP      +  +     
Sbjct: 288 IGIKDREIQRGLSEFIPQAGRMEQFILPQGAVTLTLVK-----NPTGFNQVLQTVLSRKE 342

Query: 366 HG------------EGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           H             +GR I+ L   D   +G   +              I  +  SG   
Sbjct: 343 HPIRLLIGINDLAADGRDISWLWDVDFECLGREEER-------------IQRIVCSGLRA 389

Query: 412 LALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   L      +  +H    M      +   L     + +
Sbjct: 390 EDMAVRLKYAGVPADKLHLEREMSNALEKLSEGLAGQATIFI 431


>gi|219667402|ref|YP_002457837.1| hypothetical protein Dhaf_1345 [Desulfitobacterium hafniense DCB-2]
 gi|219537662|gb|ACL19401.1| domain of unknown function DUF1727 [Desulfitobacterium hafniense
           DCB-2]
          Length = 476

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 115/402 (28%), Gaps = 87/402 (21%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           II +TG+ GKTTT  +L   L +  KT+A      N   G+   L            ++ 
Sbjct: 65  IIMVTGTNGKTTTANLLAQILKADGKTFAFNQAGANLVTGITGALLANTGWGGRSKVKMA 124

Query: 169 MSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  + E         V P++A++T      L  +  ++        + + +     + LN
Sbjct: 125 LLEVDEATVPKFCQQVTPYVAIVTNFFRDQLDRYGELDTTIK---LVRDAIPPQTHLILN 181

Query: 227 YDDSFFELL-KAKSHAL--------------------------GIKTIYS---FG----- 251
            DD       + + H L                          G + +Y+   +G     
Sbjct: 182 ADDPLVAQFGRERIHTLYYGVEQTPDSKIYSTETREARFCPHCGAELVYTLYHYGQLGIY 241

Query: 252 ------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K        +  K   +     V    +         GY+   N L  +     
Sbjct: 242 ACPCGYKRPEPPVLAQNVKAGEDGIQFRV----EPTSYSITLQGYYNLYNALAAMTAAKR 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +        + LS F P+ GR +++         TL+      NP      +  +     
Sbjct: 298 IGIKDREIQRGLSEFIPQAGRMEQFILPQGAVTLTLVK-----NPTGFNQVLQTVLSRKE 352

Query: 366 HG------------EGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           H             +GR I+ L   D   +G   +              I  +  SG   
Sbjct: 353 HPIRLLIGINDLAADGRDISWLWDVDFECLGREEER-------------IQRIVCSGLRA 399

Query: 412 LALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   L      +  +H    M      +   L     + +
Sbjct: 400 EDMAVRLKYAGVPADKLHLEREMSNALEKLSEGLAGQATIFI 441


>gi|167896006|ref|ZP_02483408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 7894]
          Length = 504

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    +  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGVDFEFVGGAFSPALIDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 95  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 151

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 152 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 207

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 208 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 264

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 265 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 324

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 325 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|167740313|ref|ZP_02413087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 14]
 gi|167817531|ref|ZP_02449211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 91]
 gi|167920620|ref|ZP_02507711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei BCC215]
          Length = 504

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 95  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 151

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 152 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 207

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 208 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 264

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 265 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 324

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 325 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|84496504|ref|ZP_00995358.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383272|gb|EAP99153.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 737

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 117/386 (30%), Gaps = 52/386 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-------- 156
             +  + +ITG+ GKT+T  +L     +  K  A   +        +             
Sbjct: 160 TPRIPVASITGTNGKTSTTRLLAHIAMTSGKHTAWSSTDGVVDHGTMIEPGDFSGPAGAR 219

Query: 157 ----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAK 210
                  V+ GI E   +  G +     +    ++V+T +   HL       ++++A  K
Sbjct: 220 GVLGAPGVEIGILE--TARGGMLLKGLGVSHNDVSVVTNVTADHLGLQGVDTVDQLAEVK 277

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA---DFQLRKWKQCS 267
           A I       G   LN DD    +   ++ +     ++S   +  A              
Sbjct: 278 AIITRATRPDGWTVLNGDDP--RVWAMRTGSPAKPWVFSLDANSPAIREALGAGGRAITV 335

Query: 268 EQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               + V               + +   G+  H   N+L        L  D    I+ L 
Sbjct: 336 LDDRVTVLTDSGVPDRLVSVVDVPMTISGLSRHNVTNVLAATAAALALGIDRAAVIEGLR 395

Query: 319 VFHP----KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            F P      GR   Y      G    +      N A ++A + V   +      R    
Sbjct: 396 TFRPDAALNPGRMNTYSAPGGLGGTCTVVVDLAHNEAGLEALMDVAEGLR-QPGSRIHLG 454

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHV-------WLSGFHVLALKDALPRSIHVHYS 427
           LG     G+ +     +L E+       H+       +L G  +  L+  L   +     
Sbjct: 455 LGA---GGDRTDEILENLGEIAGHR-ADHIVAAHKAHYLRGRSMEDLEAHLRIGLQRAGV 510

Query: 428 ETMD----GL--FLFIQSSLVDGDVV 447
             +D     L     +     DGDVV
Sbjct: 511 ADIDSYETELTGLRALVEVAHDGDVV 536


>gi|330887111|gb|EGH20321.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. mori str. 301020]
          Length = 412

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 121/381 (31%), Gaps = 39/381 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
            +A  +     ++A  G+ GKTTT  ML   L          G     I     ++    
Sbjct: 57  WLADHVLQDRWVLAGAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGIPQNFAVSARLG 113

Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  F + E            +  V  RP  A++  +   H   F  +  I      +   
Sbjct: 114 DTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRT 173

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +     +     +        ++T       +   +Q R      + S  EV  
Sbjct: 174 IPSEGLVIHPTTEPALSRVIEMGCWTPVQT-----TGEGGQWQARLL--SEDGSRFEVLF 226

Query: 277 QGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +G+    V     G +   N L TL     +       ++ALS F   +   +R      
Sbjct: 227 EGQLQGCVEWDMTGQNNVANALATLAAARPVGVVPSLGVQALSAFKSVK---RRMEKVAE 283

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLA 393
               T+ D+ +  +P ++   +  L      G+   IAV+    E    S     H D  
Sbjct: 284 VRGITIYDD-FAHHPTAIATTLDGLR--KKIGDAPIIAVI----EPRSNSMKLGAHRD-G 335

Query: 394 EVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              S+     V        G+ + A       S+     ++++ +   + S    G  +V
Sbjct: 336 LPESVSQADQVVWYAPPNLGWDLAATVAG--GSVPSTVCDSLEAIIARVHSQAQPGTHIV 393

Query: 449 VKSSNSCGF----YRLINLLL 465
           +  SN  GF     +L   L 
Sbjct: 394 IM-SNG-GFGGLHGKLAEALK 412


>gi|254246379|ref|ZP_04939700.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia PC184]
 gi|124871155|gb|EAY62871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia PC184]
          Length = 491

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 125/372 (33%), Gaps = 37/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + GV   L     D  F + E  
Sbjct: 136 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLT----DSSFFVIEAD 191

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224
                     +  V  RP  AV+  +        +    +  +K     G  +   G I 
Sbjct: 192 EYDTAFFDKRSKFVHYRPRTAVLNNLDS---ITPTSSPILPRSKRNSSSGAHVPGVGRIV 248

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N      E + A+        +  FG          +     ++ +      G+  EV 
Sbjct: 249 TNGRSDALERVLARG---CWSEVERFGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVA 305

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +      A ++L+ F   +   +R     +    T+ D+
Sbjct: 306 WQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVK---RRMEVRGSVDGVTVYDD 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISH 403
            +  +P ++   I+ L         R +AVL    E    +    +  +++  SL +   
Sbjct: 363 -FAHHPTAIDTTIAGLRARIGRQNARILAVL----EPRSNTMKLGVMKSQLPASLADADL 417

Query: 404 VWLSG------FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           V+  G           L +AL P        + +  L   +  +   GD V+V  SN  G
Sbjct: 418 VFGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVM-SNG-G 475

Query: 457 FY----RLINLL 464
           F     +L++ L
Sbjct: 476 FGGVHQKLLDAL 487


>gi|255098863|gb|ACU00771.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium massiliense]
          Length = 188

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 14/186 (7%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP++ ++T I   HL +F   E  ++   E  E L   G + +  DD     L  ++H  
Sbjct: 8   RPNLIIVTNIEADHLDHFGSAEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHER 67

Query: 243 GIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMA 293
           GI+ +  +G +  A+        QLR W+     +  ++QL G+S    +     G HMA
Sbjct: 68  GIR-VRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMA 126

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +   + + A VD  +  L+ F   EG  +R+    +     + D+ Y  +P  +
Sbjct: 127 LNALAAVVAAAEIGAAVDDVLDGLAGF---EGVRRRFELVGSVESVRVFDD-YAHHPTEV 182

Query: 354 KAAISV 359
           +  +  
Sbjct: 183 RTVLQA 188


>gi|298527810|ref|ZP_07015214.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511462|gb|EFI35364.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 888

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 115/325 (35%), Gaps = 37/325 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-------------TL 153
           +  II++TG+ GKTTT  ++   +    K      +   +I   L              +
Sbjct: 481 RIPIISVTGTNGKTTTTRLIAHIMHMSGKKVGYTTTDGIYIQNRLLYKGDCSGPDSARFV 540

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKA 211
            R P  VD+ +FE   +  G +R         + V+T +A  HL  +    +E++   K 
Sbjct: 541 LRDPT-VDYAVFE--TARGGMMRAGLGYDLSDVGVVTNVASDHLGLYGIHTLEQLTRLKC 597

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKS---------HALGIKTIYSFGKSKNADFQLRK 262
            + E ++ +G   LN DD +   ++            +A   +          A      
Sbjct: 598 LVAENVQPSGYAVLNADDDYVYSMQENVSCNTAFFSMNAGNPRIKKHCSSGGTAAVYDEG 657

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                +  W  +  +  ++ + + G      QN+L       +    V+     L  F P
Sbjct: 658 DIILRKGDWSMLVDRVINIPLTYFGKAAFQVQNVLAACLAAFVQEVKVEEIRLGLQTFAP 717

Query: 323 KEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              +   R      + F  LID  Y  NP+SM+A    +S +   G G   A+L      
Sbjct: 718 SSAQLPGRMNIFEFEKFKVLID--YAHNPSSMEAMGRFVSSL---GMGVSTAILAG---T 769

Query: 382 GELSQSFHIDLAEVLSLYNISHVWL 406
           G+       D   V + Y    + +
Sbjct: 770 GDRRDKDLQDYGRVAAEY-FDRIIV 793


>gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
 gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
          Length = 470

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 107/371 (28%), Gaps = 43/371 (11%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
             + +A RLR    A  +A+TG+ GKTTT +ML   L +     A +G+    +   +  
Sbjct: 97  GDVELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILEAAGLRTAAVGNIGVSLLDAV-- 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D    EL    L         +R H A +  +AP HL     +E  A  K  +
Sbjct: 155 -LGEERYDVLAVELSSYQL----HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYARDKGRV 209

Query: 214 FEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           +EG         N D       E L  ++          F        QL   +      
Sbjct: 210 YEG--NRVACVYNADATGKPSTEDLVREADVEEGCRAVGFTLGAPGPSQLGVVEGILVDR 267

Query: 271 WMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                 Q  + E       +    H   N L    +              L  F      
Sbjct: 268 AFVENRQRNAQELAEVSDVNPPAPHNIANALAAAALARAYGVPASAVRDGLRAFT---PD 324

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R     +    T ID+S   N  + +A+++             I  +      G    
Sbjct: 325 AHRIAHVADVDGVTYIDDSKATNTHAAEASLAAYDS---------IVWIAGGLAKGATFD 375

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQ 438
                 A+ L         L G     +++AL R         +D              Q
Sbjct: 376 ELVGGAAKRLRGA-----VLIGRDRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEAQ 430

Query: 439 SSLVDGDVVVV 449
                GD V++
Sbjct: 431 RLARPGDTVLL 441


>gi|15594930|ref|NP_212719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
 gi|3914074|sp|O51532|MURD_BORBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2688512|gb|AAB91522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
          Length = 451

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 123/344 (35%), Gaps = 31/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  I+A+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++ +     S       +  F +    DF  +    C+E    +V      +    +
Sbjct: 221 QDQAYCKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNDSLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++   + LS F   E R +  +   N       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLNRTGQILSNFKGIEHRLEFVKSVQN---VMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S   ++  L           + V G   E+  LS S    +A+++  +    + +
Sbjct: 330 STIPESTVLSVKSLKTKDNRIN---LIVGGTDKELDFLSFS---KIADIVRTW----ILI 379

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 380 RGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|13471551|ref|NP_103117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           loti MAFF303099]
 gi|30316110|sp|Q98KB1|MURD_RHILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14022293|dbj|BAB48903.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Mesorhizobium loti
           MAFF303099]
          Length = 466

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 78/240 (32%), Gaps = 15/240 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  IAITG+ GK+TT  +    L S  +     G+    IG  +     P      + 
Sbjct: 112 PTAPFIAITGTNGKSTTTALTAHILKSAGRDTQMGGN----IGRAVMTLDPPKPDRHFVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  AS K  +  G E   T  +
Sbjct: 168 ECSSYQID----LAPSINPTAGILLNLTPDHLDRHGTMQHYASIKERLVAGSE---TAII 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DDS+   +  +    G + I    +    D          E        +   +E + 
Sbjct: 221 GIDDSWCAQIAERLERAGQQVIRISKRLPLTDGYFADGTNLMEAVHGRYS-KVAFLEGIG 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H AQN L  +     +  D+       S      G   R      +     +++S
Sbjct: 280 SLRGQHNAQNALAAVAACLKVGLDLGEI---QSGLESFPGLAHRMEQVGRKDHVLFVNDS 336


>gi|83720203|ref|YP_441664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis E264]
 gi|167618579|ref|ZP_02387210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis Bt4]
 gi|257137833|ref|ZP_05586095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis E264]
 gi|122063238|sp|Q2SZI5|MURD_BURTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83654028|gb|ABC38091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           thailandensis E264]
          Length = 504

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 138/461 (29%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    +  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGIDAEFVGGAFSPALIDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IPV+G  ++      L           +IAITG+ GKTTT  +  +      KT A
Sbjct: 95  RERGIPVWG--ELEFFAQALTTLGANGYAPKVIAITGTNGKTTTTSLAGLLCERAGKTVA 152

Query: 139 CIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             G+ +  +   LT A       D  + EL    L       H   P  A I  I   HL
Sbjct: 153 VAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDHL 208

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA- 256
               G    A+AK  IF          LN DD+        + A       +FG ++ A 
Sbjct: 209 DWHGGFAAYAAAKGRIF---GPRTVRVLNRDDAEVMKFAPPAAAADAPRAITFGLNEPAA 265

Query: 257 --DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT-- 312
             D+ L +           V+   +              Q       I        D   
Sbjct: 266 DGDYGLLR----ENGIAWLVEAVDRDAADAPATPSRRRKQEAANPPDIALKRLMPADALR 321

Query: 313 -----------------------AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                                  A   L       G   R            +D+S   N
Sbjct: 322 IRGLHNAANALAAYALARAIDLPAAPLLHGLREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLADHATLESAVRAAGALAQPGDAVLL 469


>gi|121599228|ref|YP_991823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           mallei SAVP1]
 gi|124386373|ref|YP_001027316.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           mallei NCTC 10229]
 gi|126450221|ref|YP_001082747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           mallei NCTC 10247]
 gi|126453698|ref|YP_001067788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 1106a]
 gi|161723195|ref|YP_109623.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei K96243]
 gi|162210077|ref|YP_334917.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 1710b]
 gi|166998639|ref|ZP_02264497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           mallei PRL-20]
 gi|167721344|ref|ZP_02404580.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei DM98]
 gi|167847417|ref|ZP_02472925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei B7210]
 gi|167912653|ref|ZP_02499744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           pseudomallei 112]
 gi|217425707|ref|ZP_03457197.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 576]
 gi|226199591|ref|ZP_03795147.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242318011|ref|ZP_04817027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 1106b]
 gi|254199039|ref|ZP_04905454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei S13]
 gi|254258968|ref|ZP_04950022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 1710a]
 gi|254299368|ref|ZP_04966818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 406e]
 gi|118595645|sp|Q3JND6|MURD_BURP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595646|sp|Q63QJ5|MURD_BURPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158513534|sp|A3NZL7|MURD_BURP0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224751|sp|A3MR61|MURD_BURM7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224752|sp|A2S5U7|MURD_BURM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224753|sp|A1V0S0|MURD_BURMS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121228038|gb|ABM50556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei SAVP1]
 gi|124294393|gb|ABN03662.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           mallei NCTC 10229]
 gi|126227340|gb|ABN90880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 1106a]
 gi|126243091|gb|ABO06184.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           mallei NCTC 10247]
 gi|157809055|gb|EDO86225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 406e]
 gi|169656869|gb|EDS88266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei S13]
 gi|217391295|gb|EEC31327.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 576]
 gi|225928337|gb|EEH24368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242141250|gb|EES27652.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 1106b]
 gi|243065318|gb|EES47504.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           mallei PRL-20]
 gi|254217657|gb|EET07041.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei 1710a]
          Length = 504

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 37  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 94

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 95  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 151

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 152 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 207

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 208 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 264

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 265 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 324

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 325 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 381

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 382 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 428

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 429 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|301155957|emb|CBW15427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 451

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 136/407 (33%), Gaps = 30/407 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 65  MVIVGNAMKRGNPCVEYVLDNALPYTSGPQWLHDHLLRNRWVLAVSGTHGKTTTTGMLAW 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHI 186
            L          G     I      +    + +F + E            +  V   P  
Sbjct: 125 ILEQNGLK---PGFLIGGIAGNFGTSARLGESEFFVIEADEYDTAFFDKRSKFVHYNPKT 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  I+  H   F  +  I      +   +  TG +    D+   +           + 
Sbjct: 182 LIINNISFDHADIFDDLHAIQRQFHHMIRTIPSTGRVLSFADEQSVKETLNMGCWSEQQF 241

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305
           I      K+ ++   +    ++ S   V   GK + EV  + +G H   N LM +     
Sbjct: 242 I-----GKDKEWFAERI--TNDCSEFAVFHHGKKVAEVKWNIVGQHNMHNALMAIVAAYH 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++ A +AL  F   +   +R          T+ D+ +  +P ++ A ++ L     
Sbjct: 295 AGIKIEDACQALGSFINAK---RRLEVKGEVNGITVYDD-FAHHPEAILATLTALRD-KV 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            G  R +AVL    E    +     H D +A  L   +   +         + +   + +
Sbjct: 350 GGGVRILAVL----EPRSNTMKMGVHKDEIAPALGRADAVFMLQPDNIPWDVAEIAGQCV 405

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLL 465
              HY+ ++D L   I +     D ++V    S       ++++ L 
Sbjct: 406 QPAHYTGSVDKLVDMIVAEAKPRDQILVMSNGSFGGIHQ-KILDRLK 451


>gi|225552147|ref|ZP_03773087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
 gi|225371145|gb|EEH00575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
          Length = 451

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 121/350 (34%), Gaps = 43/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIA+TG+ GK+T   +L  AL          G+       PL+           I E
Sbjct: 110 KNPIIAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS---PLSFFDQLDGKSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P I++IT +   H + +   ++    K++IF        I + 
Sbjct: 167 LSSWQLQSLENF----NPIISIITNVYNDHQNYYLNFDDYIIDKSKIFVNQTSG--IVII 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +    DF  +    C+E    +V      +    +
Sbjct: 221 QDQAYYKYF---SKFKSKVRVILFSEFNPCDFD-QDIFYCNEG---KVYFNDNLIGSFSN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +   ++ T  +   L  D++       + +  +G   R     +       +++ 
Sbjct: 274 SRAVFIIPKVI-TFFVSYYLNIDLN---HTGQILNNFKGIEHRLELVKSVQNVMFYNDTA 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  P S   ++  L       +  RI  ++G     G   +       + LS   I+++ 
Sbjct: 330 STIPESTVLSVKSLKT-----KDNRINLIVG-----GTDKE------LDFLSFSKITYIV 373

Query: 406 -----LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
                + G   + +   L +S   ++  +++     +       GD+V+ 
Sbjct: 374 RTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGDIVLF 423


>gi|222832328|gb|EEE70805.1| predicted protein [Populus trichocarpa]
          Length = 140

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL  L+ A     + T++ ITG+ GKTT   +    L       A  G+    +   LT 
Sbjct: 2   ALKALSAAHG--YRPTVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAGNIGPTLLDTLTQ 59

Query: 154 ARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           A +  +      + EL    L  ++    +  P  A +  I   HL     +   A AKA
Sbjct: 60  A-IDAETLPQAWVLELSSFQLDGVQ----MFEPTAAAVLNITQDHLDWHGSLRAYADAKA 114

Query: 212 EIFEGLEKTGTIFLNYDDS 230
            IF     +GT+ LN +D 
Sbjct: 115 CIF---GSSGTMVLNREDP 130


>gi|254178932|ref|ZP_04885586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei ATCC 10399]
 gi|254191014|ref|ZP_04897520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254357637|ref|ZP_04973911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei 2002721280]
 gi|148026701|gb|EDK84786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei 2002721280]
 gi|157938688|gb|EDO94358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160694846|gb|EDP84854.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei ATCC 10399]
          Length = 508

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 41  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 98

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 99  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 155

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 156 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 211

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 212 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 268

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 269 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 328

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 329 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 385

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 386 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 432

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 433 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 473


>gi|72161512|ref|YP_289169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Thermobifida
           fusca YX]
 gi|122063271|sp|Q47QX1|MURD_THEFY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71915244|gb|AAZ55146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermobifida fusca
           YX]
          Length = 465

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 98/277 (35%), Gaps = 19/277 (6%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSI 133
                   + V   D  +  +  + +A RLR    + +A+TG+ GKTTT  ML   L + 
Sbjct: 75  PGWRPDAPVLVAAADAGVEVIGDVELAWRLRPAGQVWLAVTGTNGKTTTVRMLEAMLRAD 134

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +    +G+    +     LA  P   D    EL    L      +  V+PH A I  +A
Sbjct: 135 GRRALAVGNVGTPVIDAA-LADGPDRWDILAVELSSFQL----HWSATVQPHAAAIINLA 189

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           P HL    G+E  A+AKA+++      GTI  +N  D     L A++H      +  F  
Sbjct: 190 PDHLDWHGGMEPYAAAKAKVYGA----GTIRIVNAADPALREL-AETHGDPAAPLVGFSL 244

Query: 253 S--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--HMAQNMLMTLGIVSILTA 308
              +  +  L +            + +   +  +        H   N L    +   +  
Sbjct: 245 DVPRAGELGLVEDLLVDRAFVANPRTEATELATLADVTPRAPHNVANALAAAALARSIGV 304

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +     L  F P+     R            +D+S
Sbjct: 305 APEAVRTGLRNFQPEP---HRIAHVATIDGVDYVDDS 338


>gi|15678558|ref|NP_275673.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621604|gb|AAB85036.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 682

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 113/358 (31%), Gaps = 81/358 (22%)

Query: 149 VPLTLARMPVDVDFGIFELGMS-HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           VP   AR+P DV   + E+G     GEIR    L    + VIT I+  HLS      +  
Sbjct: 339 VPALQARLPGDV--AVVEIGTFGRRGEIRSSAMLSGVSVGVITNISRDHLSAGRRFSDYI 396

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN------------ 255
             K E+ E  E    + LN DD     L   +  L  + +  +G   +            
Sbjct: 397 ECKGEMVEVAED---LVLNADDPIVASL---ADGLPRERVVFYGIQSSESGGVVPEGREC 450

Query: 256 -----------------ADFQ-----------LRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                             D+Q           +   +        ++ +  +  EV    
Sbjct: 451 PKCGKPLRYTRRTIGHLGDYQCICGYLRPQPDVMAIEASPGG--FKLVIGQEMREVRLAT 508

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L        +  ++D  ++ L  F    GR +    +        I   Y 
Sbjct: 509 PGIFNVYNALAAAATAWTMGLEIDDIVRGLESFKGVPGRFQELSESPR------IILDYA 562

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-- 405
            NPA ++A +  L       +GR I V     E G        ++A +L   +   V   
Sbjct: 563 HNPAGVRAVMQDLRG-----KGRLIVVNTVASESGIDGD---REIAAILK--DADVVIPA 612

Query: 406 ---------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKS 451
                    + G   + +  +  R+       + + +   ++ +L      D V++  
Sbjct: 613 SYAARRASDILGERAVHIGSSRMRAGGGTLGASREQVAEAVRKALELAGPDDTVLIIG 670


>gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes
           teichomyceticus]
          Length = 298

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 88/283 (31%), Gaps = 28/283 (9%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +R      T     HL      EE  +AKA +F+G  + G   LN+DD     L A    
Sbjct: 1   IRFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDGRTEVG--VLNHDDPAVMSLLA---- 54

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTL 300
                 YS   +  A +     +             G  ++E      G H   N L+ L
Sbjct: 55  -PGMVTYSASGNTEATWWASDVRPSDFGQRFVAHGPGGITVETGVALPGLHNVANALLAL 113

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  +  D   A   +       GR ++                Y   P ++ AA++ L
Sbjct: 114 ALLVAVGIDPQVAGTGVRECRGVPGRLEQVAAPGEILGVV----DYAHKPNAIVAALAAL 169

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
            +++    GR + VLG   +     +    +     +      V ++          A++
Sbjct: 170 RELASARGGRLVCVLGAGGDRDRGKRPLMGE----AAARGADLVIITDDNPRTEDPAAVR 225

Query: 416 DALPRSIHVHYSETM-------DGLFLFIQSSLVDGDVVVVKS 451
            A+ R     ++                       GDV+ V  
Sbjct: 226 AAVRRGAEEAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLG 268


>gi|148643250|ref|YP_001273763.1| UDP-N-acetylmuramate-alanine ligase [Methanobrevibacter smithii
           ATCC 35061]
 gi|148552267|gb|ABQ87395.1| cell wall biosynthesis protein, UDP-N-acetylmuramate-alanine ligase
           family [Methanobrevibacter smithii ATCC 35061]
          Length = 511

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 50/255 (19%)

Query: 148 GVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            +P+  +R+  DV  GI E+G     G I  +         +IT I P HL++  G  E 
Sbjct: 156 YIPILQSRLNGDV--GILEVGTFGVPGTIERIVGNSELTSGLITNITPDHLNDLGGFMEY 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------------ 254
           A  KAE  +GL     + +N  D     L  + +  G   I +FG  +            
Sbjct: 214 AHVKAEFIKGL-AGKQLIVNGQDPTIMGLLRELNFAG--EIITFGVDEMPVGVASKECVC 270

Query: 255 -------------------------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                                      D+        +     E+    + +EV     G
Sbjct: 271 GKTIDVKEIISGSGYYLCECGLTTPQLDYIATNINLKNR--TFELHTPEEKLEVKMLLDG 328

Query: 290 YHMAQNMLMTL-GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            H   N++  +      L    D  +++++ F    GR ++      +         +  
Sbjct: 329 IHNVYNVVGVIVAAHEFLKLPYDKILESIATFGGVSGRMEKVATIGEKDVVV----DFAH 384

Query: 349 NPASMKAAISVLSQI 363
           NPA ++  +    ++
Sbjct: 385 NPAGVETVLREFKKL 399


>gi|281412288|ref|YP_003346367.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
 gi|281373391|gb|ADA66953.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
          Length = 457

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATII------- 111
           G  + V ++        L I    V D     V   + ++ V  RL     I+       
Sbjct: 45  GIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPVENRLHYFRDILKREKKEE 104

Query: 112 -AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            A+TG+ GKTTT  M+   L  +KK       +   I   L            ++EL   
Sbjct: 105 FAVTGTDGKTTTTAMVAHVLKHLKK---SPTVFLGGIMDSLEHGNYEKGNGPVVYEL--- 158

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              E         P+  +IT     HL N+   +    SA  +I +       I    +D
Sbjct: 159 --DESEEFFSEFSPNYLIITNARGDHLENYGNSLSRYRSAFEKIGKN---ADLIVTFAED 213

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                L             +FG  K   + L        +    V+  GK   E      
Sbjct: 214 ELTSHLGD----------VTFGVKKG-TYTLEMRSASRAEQKAVVEKNGKRYLEFKLKVP 262

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYN 347
           G+H   N L  + +   L  D+  A++AL  F    G  +R+  A +     + + + Y 
Sbjct: 263 GFHNVLNALAVIALFDSLGYDLAPALEALETF---RGVHRRFSIAFHDPETNIYVIDDYA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVW 405
             P  ++  +    ++  +    +I V+        L +         ++     ++ V+
Sbjct: 320 HTPDEIRNLLQTAKEVFENE---KIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVY 376

Query: 406 LSGFH------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            +            + D+L       ++ E +  L   I   + +  V +   +   
Sbjct: 377 DAFEEKKNNISGKMIWDSLRSLGKEAYFVEKLPELEKIIP--VSENTVFLFVGAGDI 431


>gi|296532823|ref|ZP_06895497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseomonas
           cervicalis ATCC 49957]
 gi|296266852|gb|EFH12803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseomonas
           cervicalis ATCC 49957]
          Length = 608

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 26/282 (9%)

Query: 83  IPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +PV    ++L  A+     AAR       + ITG+ GK+TT  +L   L+   +  A  G
Sbjct: 247 VPVLCDAELLYRAVRAAGSAARF------VGITGTNGKSTTTALLHHLLARAGRAVAVGG 300

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +          L +        + E+    L  +  L    R  + ++  + P H+    
Sbjct: 301 NLGPAAIGLPILNQ----DGIYVLEMSSYMLERLAEL----RFDLGLMLNLTPDHIDRHG 352

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +   A+AKA +F+         +  DD +     A+  A  +  I              
Sbjct: 353 DMPGYAAAKAHLFDRQGGGDLAIIGMDDEWGPRF-AEGRAARVVPISGHAPQPGG-VWAE 410

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                 +Q           ++      G H AQN    +     L          L+ F 
Sbjct: 411 GRLLRDDQG------PIADLDRAAALPGAHNAQNAAAAVAAALALGLGRAEIAAGLASFP 464

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               R +R      +     +++S   N  S   A++   ++
Sbjct: 465 GLPHRQERV---GTRAGILFVNDSKATNADSAAPALASYGRV 503


>gi|281356446|ref|ZP_06242938.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317138|gb|EFB01160.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
          Length = 511

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 129/418 (30%), Gaps = 76/418 (18%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TGS GK+T    L  AL+++    A     +  +    T  R   +   G  +  + 
Sbjct: 111 IAVTGSCGKSTVTAYLAEALTNLG---ADPSCLDGALIKRFTGGRYAGNYRHGAGKYFVF 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P  A+I  +   H       +E+     E    ++K   +    +  
Sbjct: 168 EADESDKSLVNYSPDYAIILNLGCDHYE----KDELVRVFGEFLAKVKKGAVL----ERE 219

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--------------------- 269
            +EL++ +        +       ++ F + +++  +                       
Sbjct: 220 VYELVRPRLKPGFPVRVIDASPRPDSQFAIEEYRILTRTDAIYSQGGRRERLAPSGDRAV 279

Query: 270 ----------SWMEVQLQGKSMEVVHHG-------------IGYHMAQNMLMTLGIVSIL 306
                     S   ++ +G  +E                   G+HMA N L    ++  +
Sbjct: 280 TDTIGATNLLSIYGMRSEGFRLESRLPVARFTGGRKLELPQPGFHMAMNALAIDALLEWI 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    I+AL  F   +G  +R   A        + + Y  NP  + +    + ++   
Sbjct: 340 GFDPAETIEALERF---DGVWRRNDYAGLTASGATVYDDYAHNPEKIVSCFRAMREM--- 393

Query: 367 GEGRRIAVL--GDMCEMGELSQSFHIDLAEVLSLYN----ISHVWLSG--------FHVL 412
           G+G   AV         G +    ++++   L   +    +   +  G          VL
Sbjct: 394 GDGNIYAVFQPHGYAPFGFMRDQLYLEIEPELRNNDRFILLPPYYAGGTSSFRPKPEEVL 453

Query: 413 ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           A   +  R      Y    + L  F+      GD +V+  +           L  E P
Sbjct: 454 ADWQSRCRRPERFMYFPNRELLTDFLLLQSKPGDTIVIMGARDNSLSDYAASLTGEKP 511


>gi|332290159|ref|YP_004421011.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330433055|gb|AEC18114.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 458

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 144/416 (34%), Gaps = 38/416 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     +++        +   L     ++A++G+ GKTTT  MLT 
Sbjct: 67  LVIIGNAMKRGNPCVEYVLDNNLPYMSGPQWLHDNLLRNRWVLAVSGTHGKTTTTGMLTW 126

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG  + + G+   L + P    F + E            +  +   P 
Sbjct: 127 ILDQAGLEPGFLIGGISGNFGISARLGKSP----FFVIEADEYDTAFFDKRSKFIHYNPK 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  I   H   F  ++ I      +   +   G I    D++  +   A       +
Sbjct: 183 TLIINNIGFDHADIFDDLKAIQRQFHHMIRTIPSKGRILSFADETSVKETLAMGCWSEQQ 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
            I      ++ ++  ++ +  ++ +  EV  Q + + EV  + +G H   N LM +    
Sbjct: 243 FI-----GEDKEWFAKRLR--NDCTKFEVYHQQQKVAEVEWNIVGQHNMFNALMAIAAAY 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ + KAL+ F       +R          T+ D+ +  +P  + A ++ L    
Sbjct: 296 HAGVSIEQSCKALATFVNAN---RRLEVKGEVNGITVYDD-FAHHPVEISATLTALRD-K 350

Query: 365 PHGEGRRIAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDAL 418
             G  R +AVL      M  MG  ++     L          +V+L     L   + D  
Sbjct: 351 VGGGVRILAVLEPRSNTMK-MGVHTKELAPALVR------ADYVFLLQPENLPWQVVDIA 403

Query: 419 PRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYRLINLLLEEFPA 470
            + I    ++  +D L   I       D ++V    S       +++  L  +   
Sbjct: 404 NQCIQPAVWTADIDLLVDKIVEEAQPTDHILVMSNGSFGGIHQ-KILQKLRAKAEQ 458


>gi|320450522|ref|YP_004202618.1| UDP-N-acetylmuramate--alanine ligase [Thermus scotoductus SA-01]
 gi|320150691|gb|ADW22069.1| UDP-N-acetylmuramate--alanine ligase [Thermus scotoductus SA-01]
          Length = 446

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 33/265 (12%)

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--------NFSGIEEIASAKAEIFEGLEKTG 221
           + + E   L   V   +AV T +   H++          + +EE+  A       L +  
Sbjct: 151 AEVDESDPLFQEVEVAVAVATNLEADHIAPAGQRAPNYHASLEELEKAMRGF---LSRAK 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T+ +   D     L   S  L  K        +  D    + +     S  ++  QG+++
Sbjct: 208 TVVVPTFDPRLLRL---SQGLPRKL-----FGEGGDLWAEETELGPTGSRFQLVYQGRTL 259

Query: 282 -EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E      G H  QN L           +    ++ L+ F    G G+R++         
Sbjct: 260 GEARLQVPGAHNVQNALAAALAALSFGVEPKAILEGLARF---PGVGRRFQKIGEVRGAW 316

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++D+ Y  +P  +KA ++    +     GRR+ VL     +   +Q      AE L+  +
Sbjct: 317 VVDD-YAHHPTEVKATLATAKLL-----GRRVRVLFQPHRL-LRTQELWEGFAEALASAH 369

Query: 401 ---ISHVWLSGFHVLALKDALPRSI 422
              +  V+ +G       +AL R I
Sbjct: 370 EVVVLPVYTAGEKAGISPEALSRRI 394


>gi|304321486|ref|YP_003855129.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diamino pimelate ligase [Parvularcula bermudensis
           HTCC2503]
 gi|303300388|gb|ADM09987.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diamino pimelate ligase [Parvularcula bermudensis
           HTCC2503]
          Length = 480

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 136/432 (31%), Gaps = 41/432 (9%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
            I+G   D        +  G    +V         + S     V      L +L    R 
Sbjct: 51  PIEGHRADNLPSDPDLIVIGKHATLVPETNEEVRAAFSYYADRVRSFPQVLAQLTEDRRR 110

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                   + GS GK++   ++T AL   ++     G +   I   L+ +         I
Sbjct: 111 TV------VAGSYGKSSLSTLITHALLFAERD---PGWFIGAIPRGLSHSSHIGGTGPFI 161

Query: 165 FELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221
           FE            +  +  +PH  V+T+    H++ F  + +       + + L  + G
Sbjct: 162 FEGDEYPSANFDDRSKFLHYQPHTVVLTSATHDHVNVFPTLADYHRPFGALLQDLATREG 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQ 277
                 D    E   A+       T  S+G  + ADF  R  K         +  ++  +
Sbjct: 222 CFVACTD----ERHAARFFDDYDGTKVSYGLVEGADFTARAIKPGDPLEGTPTRFDLLAR 277

Query: 278 GKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+ +  +    +G H  QN+        +L     +           +G  +R       
Sbjct: 278 GELIAGMQTLELGRHAVQNICGA--AAYLLGEKQMSPALFREAVGAFQGLTRRLDRKAEN 335

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           G + +    Y    +S++ A S +     H   RR+ VL +       ++          
Sbjct: 336 GPYLI----YEGFGSSLEKARSAIEAARLHFPDRRLVVLFEPHTFTWRNKKALDQYDRAF 391

Query: 397 SLYNISHVWL-------SGFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDG 444
               +  V++       +G H  A  D +   I      V        +   + +     
Sbjct: 392 D--GVDQVYVAAPPETAAGSHDQASLDEIVERIRANNETVTPLPDPAAIVDILPTLSPSK 449

Query: 445 DVVVVKSSNSCG 456
           D +++ SS S G
Sbjct: 450 DFLLILSSGSFG 461


>gi|254180544|ref|ZP_04887142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 1655]
 gi|184211083|gb|EDU08126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 1655]
          Length = 496

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 29  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 86

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 87  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 143

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 144 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 199

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 200 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 256

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 257 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 316

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 317 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 373

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 374 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 420

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 421 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 461


>gi|203288024|ref|YP_002223039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
 gi|201085244|gb|ACH94818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
          Length = 451

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 132/342 (38%), Gaps = 31/342 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L +        G+       PL        +   I EL 
Sbjct: 112 PIIAITGTKGKSTLASLLYRVLVASYPNVKLGGNIGIS---PLNFLDELDGISPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L +I+ L+    P I++IT +   H + +S  ++    KA+IF     +G + +  D
Sbjct: 169 SWQLHDIKSLS----PMISIITNVYCDHQNYYSNFDDYIEDKAKIFINQN-SGILIV-QD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +++       H L    I  F +    DF+        +    +V L    +  V +  
Sbjct: 223 QAYYNYFSRFKHNL---KIVLFSEIMPVDFK-EDIFYFKDG---KVYLNDGEI-GVLNES 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +  + ++T+ + + L  +++ + + +S+F   +G   R             +++ + 
Sbjct: 275 KIVLLISKMITVFVANYLHLNLNISSEIVSIF---DGIEHRLEFVKEFNGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   +I  L        G  I ++      G   +  +  + + +  +  + + L G
Sbjct: 332 IPDSTVFSIKSLK-----VHGESIHLI-----TGGTDKELNFKIFDDILSFVKTWILLQG 381

Query: 409 FHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L + + L  R+++     ++     + +   +  D+V+ 
Sbjct: 382 SATLKIIEFLKSRNVNYFIFSSLKECVCYAKEVAMTNDIVLF 423


>gi|67925908|ref|ZP_00519191.1| Cytoplasmic peptidoglycan synthetase, N-terminal:ATP-dependent
           carboxylate-amine ligase-like, ATP-grasp:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852248|gb|EAM47724.1| Cytoplasmic peptidoglycan synthetase, N-terminal:ATP-dependent
           carboxylate-amine ligase-like, ATP-grasp:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 872

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 51/382 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLTLAR 155
           S+  I+AITG+ GKTTT  +         K      +   +I            P + A 
Sbjct: 486 SRVPIVAITGTNGKTTTTRLTAHIYRQTGKVVGYTSTDGVYIGDYLVEKGDNTGPFSAAM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R         + ++  +A  HL   + + IE++A  K  I
Sbjct: 546 ILKDPTVEVAVLESARGGILRSGLAFDSCDVGIVLNVAADHLGLGDINTIEQMAQVKGVI 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS------ 267
            E +   G   LN DD     +  K        +  F  + + +      ++        
Sbjct: 606 AEVVHPDGHAVLNADDPLVAAMAEKVKG----KVAYFSMNPDNEIIENHLRRDGLAAVYE 661

Query: 268 ------EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  +    ++++   ++ +   G+   M  N L           D++   + +  F
Sbjct: 662 NGYLSILEGQFTLRIEEAVNIPMTMGGMAPFMIANALAACLAAFSQGVDIEDIRQGVRTF 721

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                +        N G    + + Y  NPA  +A      +   + +G+R+ V+G    
Sbjct: 722 TASAEQTPGRMNLFNLGEHHALVD-YAHNPAGYEAV----GEFVKNWQGQRLGVVGGP-- 774

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS----------GFHV-LALKDALPRSIHVHYSET 429
            G+      + L ++ +      + +           G    L +K  L       Y   
Sbjct: 775 -GDRRDEDLVLLGQIAARV-FDRIIVKEDDDKRGRDRGEAADLIIKGILSEKPQADYEAI 832

Query: 430 MD--GLFLFIQSSLVDGDVVVV 449
           +D      +    +  G +VVV
Sbjct: 833 LDETEAINYGLDKVDKGGLVVV 854


>gi|327405603|ref|YP_004346441.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
 gi|327321111|gb|AEA45603.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
          Length = 455

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 125/370 (33%), Gaps = 41/370 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                      I I GS GKTT   ML   ++++      +      +     + ++  +
Sbjct: 95  YLYEQSKNKYRIVIGGSHGKTTITSMLLHVVNALGLNVDYM--VGAQLEGYDCMVKLTDE 152

Query: 160 VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             F I E        I      HL +P+ A+I+ IA  H++ F   E          + +
Sbjct: 153 AKFMILEGDEYLSSPIDRRPKFHLYKPNTALISGIAWDHINVFPTWENYVEQFRIFCDVI 212

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           E  G +  N +D   + L  +  A      Y          Q   ++     + M     
Sbjct: 213 EPGGILIYNMEDPTLKELGEEFEAKLDTIAY----------QTPSYRTTDSGTVMSF--D 260

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           GK  E   +  G H  QN++  + +   +       + A+  F   +G GKR +  ++  
Sbjct: 261 GKEYE--LNIFGAHNLQNLVGAMHLAESMYISNHDFLTAIKTF---KGAGKRLQKVVDCN 315

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            FT+  + +  +P+ +KA  S + +  P        V+  M E+   S S   +   +  
Sbjct: 316 SFTMYKD-FAHSPSKLKATTSAVKEQYPTRN-----VVACM-ELHTFS-SLRKEFLPLYD 367

Query: 398 LY--NISHVWLSGFHVLALKDALPR----------SIHVHYSETMDGLFLFIQSSLVDGD 445
                     +     +     L               V        +  FI+++  D  
Sbjct: 368 GAMNAADEALVYFSPAVVAHKKLEPLTIEQVQAAFGGKVKVVNETSEVLEFIKANNWDNS 427

Query: 446 VVVVKSSNSC 455
           V+++ SS + 
Sbjct: 428 VLLMMSSGNF 437


>gi|302528471|ref|ZP_07280813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
 gi|302437366|gb|EFL09182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
          Length = 468

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 121/407 (29%), Gaps = 35/407 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKA 108
           G + +    +  A   +V T       S  + V   +  +  +  + +A R         
Sbjct: 48  GAELVPGLTEPPADTALVVTSPGWRPTSPLL-VAAAEAGVEVIGDVELAWRIGQLREHPP 106

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             + ITG+ GKTTT  ML   L +        G+    +     L  +         EL 
Sbjct: 107 AWLVITGTNGKTTTVGMLESILRAAGADAVACGNVGYPV-----LDAVRGGHQVLAVELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      +  + P  +V+  +A  HL     +EE A+AK  + +    +  +  N D
Sbjct: 162 SFQL----HWSSTIAPDASVVLNLAEDHLDWHGSMEEYAAAKGRVHQR---SRAVVHNVD 214

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV--H 285
           D +   +  +    G + I     +  A +  L +          + +   + +  +   
Sbjct: 215 DPWSTRIAEEHAPDGARRIGFVLDTPRAGELGLVEDLLVDRAFGADPETSAEELAEIADV 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L    +            K L  + P      R       G    +++S
Sbjct: 275 RPAGPHNLANALAAAALARAHGVSPAAVRKGLRAYEPAP---HRAVEVAEIGGVRYVNDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNIS 402
              NP +       L  +  H     IA  G   + G         +        L  + 
Sbjct: 332 KATNPHA------ALGSLLAHESVVWIA--GGQLK-GASVDDLVAAVGGRLRAAVLLGVD 382

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +         D     +     E M        +    GDVV++
Sbjct: 383 SPVIEAALARHAPDVPCNRLLPGDDEPMTAAVNAASALARPGDVVLL 429


>gi|169827009|ref|YP_001697167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
 gi|168991497|gb|ACA39037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
          Length = 276

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 34/276 (12%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T   +P I+++T +  AHL      +  A AK  +    +++     N D        AK
Sbjct: 3   TKTFKPKISILTNLYDAHLDYHGTFDNYAEAKFGVTRNQDESDYFIYNADQPIVVGYAAK 62

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNM 296
           S+A  I     F  +      +             +  QG            G H  +N+
Sbjct: 63  SNAQKIP----FSSNGR---TVHGISADD----TTIYWQGDPYMDRANIALPGKHNLENI 111

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +    ++  D     + L+ F    G   R +         + ++S   N  + K+A
Sbjct: 112 LAAVAACILVGCDKGKMEEVLATFG---GVRHRTQFVREWNGRKIYNDSKATNCLATKSA 168

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +              + +L    + G   +     +       ++  V   G   L   +
Sbjct: 169 LDAFQA--------PVILLAGGLDRGHSFEELRPSM------NHVKGVVAFGETGLRFVE 214

Query: 417 ALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV 449
              +S  V     ++ ++    +      +GD++++
Sbjct: 215 -FAKSCGVQQTVIAQNVEDAVHYAAPMSAEGDIILL 249


>gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 113/397 (28%), Gaps = 51/397 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           + G   +PV+   ++   L     A      A  +A+TG+ GKTTT EML   LS+    
Sbjct: 88  AAGGAGVPVWSEVELAWRLRVDRAAGGG--PAPWLAVTGTNGKTTTVEMLASILSAAGLR 145

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+       PL  A +  D+D    EL    L       H V      I  +A  H
Sbjct: 146 TRAVGNVG----TPLIEAALDPDLDVLAVELSSFQL----HFAHTVAVQAGAILNLAEDH 197

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    + K  I+E          N  D   E    ++          F     A
Sbjct: 198 LDWHGTMAAYGADKGRIYE--RAERACVYNAADGATEHEVREADVADGARAVGFTLGAPA 255

Query: 257 DFQLRKWKQCSEQSWMEVQLQ-----------GKSMEVVHHGIG----YHMAQNMLMTLG 301
              L   +                        G   ++ H   G     H+  N L    
Sbjct: 256 PGMLGVVEDVLVDRAFHAPADAVDRLTYAAELGTLADLEHLAPGGSLPPHVVANALAAAA 315

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +              L  F      G R +        T +++S   N  S  A++    
Sbjct: 316 LARAHGVPAAAVRDGLRAFT---PGGHRIQQVAALDGVTYVNDSKATNAHSAAASL---- 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    G  + V G + + G        D A+ L         + G        AL R 
Sbjct: 369 --AGFPAGSVVWVAGGLAK-GARFDELVEDRADRLRAA-----VVIGVDPGPFTAALGRH 420

Query: 422 IHVHYS---------ETMDGLFLFIQSSLVDGDVVVV 449
                            M       +S    GD V++
Sbjct: 421 APDVPVVVVDPGDTGTVMRRAVAAARSLAQPGDTVLL 457


>gi|300864111|ref|ZP_07109007.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
 gi|300337877|emb|CBN54153.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
          Length = 906

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 123/367 (33%), Gaps = 46/367 (12%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
            +V GA+  +       S+  I+A+TG+ GKTTT  +L   +    +T     +   +I 
Sbjct: 469 RNVAGAVLDMLFPQFQPSRVPILAVTGTNGKTTTTRLLAHIVKQTGQTVGYTTTDGTYIG 528

Query: 148 ---------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                      P +   +  D    +  L  +  G +R         + V+  +A  HL 
Sbjct: 529 EYLVESGDNTGPQSAHLILSDPTVEVAVLETARGGILRSGLGFEHCDVGVVLNVAADHLG 588

Query: 199 --NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
             +   +E++A+ K+ + E +   G   LN DD     +  +  A     +  F  + ++
Sbjct: 589 IGDIDTVEQLATLKSVVAESVMPNGCAVLNADDPLVAKMAQRVKA----QVAYFSMNPDS 644

Query: 257 DFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +   +        +  E                Q  ++ +   G    M  N L      
Sbjct: 645 ELVAKHTAAGGLAAVYEHGYLSILKGDWTLRIEQAVNVPLTMGGRAPFMIANALAACLAA 704

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 ++    ALS F    G+   R        +  L+D ++NA+      +   L  
Sbjct: 705 FAQGVKIEHIRAALSTFQASAGQTPGRMNLFNLGTYHALVDYAHNAH------SYEALGS 758

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKD 416
              +  G  I V+G     G+      I L + LS      + +       G    +  +
Sbjct: 759 FVRNWPGFHIGVVGGP---GDRRDEDFITLGK-LSAKIFDRIIVKEDADRRGRPAGSAAE 814

Query: 417 ALPRSIH 423
            + + I 
Sbjct: 815 LISQGIR 821


>gi|170729465|ref|YP_001774898.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa M12]
 gi|167964258|gb|ACA11268.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa M12]
          Length = 473

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 137/422 (32%), Gaps = 39/422 (9%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           ++   +      VVV      S G+ ++                +A R+      +A+ G
Sbjct: 54  YLPEHIAADCAEVVVG--NALSRGNAAVEALLDSGCRYISGPQWLAERVLPGRDTLAVAG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHI--------------GVPLTLARMPVDV 160
           + GKTTT  +L   L +  +     IG    +                 PL    +   V
Sbjct: 112 THGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEVSAAV 171

Query: 161 DFG-IFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E            +  V  RP +A++  +   H   F  +  I      +   +
Sbjct: 172 RPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHLVRTI 231

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + +N +D   + L           +  FG      +  R     ++ S   V  +
Sbjct: 232 PGRGRLIVNGED---QRLAEVLAMGCWTPVERFGFDPEFHWSARLI--AADGSRFSVWHE 286

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G  + +V    +G H   N+L  L     +       I +L+ F   +   +R  C   +
Sbjct: 287 GCEVGQVRWSLLGRHNVLNVLAALAAAHAVGVAPAAVIPSLTQFRSVK---RRLECLGER 343

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC----EMGELSQSFHIDL 392
           G  T+ D+ +  +P ++    + L  +  +    RI V  +M      +G  +Q+    L
Sbjct: 344 GAVTVYDD-FAHHPTAIA---TTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSL 399

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               ++  + H  L       +             +T +GL   +   +   D VV   S
Sbjct: 400 QAADTVVFLDHPGLVWNAAGVVAQMHVHGQVHVVHDT-EGLLSMLNEVVHASDHVVFM-S 457

Query: 453 NS 454
           N 
Sbjct: 458 NG 459


>gi|52211051|emb|CAH37039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei K96243]
 gi|76579241|gb|ABA48716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 1710b]
          Length = 496

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 29  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 86

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 87  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 143

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 144 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 199

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 200 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 256

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 257 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 316

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 317 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 373

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 374 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLIGR 420

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 421 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 461


>gi|331001074|ref|ZP_08324705.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569379|gb|EGG51157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 477

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 127/352 (36%), Gaps = 38/352 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
             II ITG+ GKTTT  + T  ++   K+    G+   +    L   R    + DF + E
Sbjct: 119 PKIIGITGTNGKTTTTMLSTAIIAEAGKSVVAAGNVGPNALGELEKHRQVGTLPDFWVLE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A +  I   H+     +E+ A+AK +IF          LN
Sbjct: 179 LSSFQL----ETTESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIFS---ADTVRVLN 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQ------CSEQSWMEVQLQ 277
            +D    L    +  +    +++FG        DF +           C   +  E+ + 
Sbjct: 232 REDPGSML---SAEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASASPELLIP 288

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             ++ +     G H A N +    +   +   +D+ ++        +G   R +  L   
Sbjct: 289 MNALRIR----GLHNAMNAMAATALTLAVGIPLDSILRM---LREYKGEPHRVQLILRAS 341

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D+S   N  ++ AA++           + + +LG   +  + +      L   + 
Sbjct: 342 DIDYVDDSKGTNVGAVAAALAGFG------PKKVVLILGGDGKGQDFAP-----LKAPIE 390

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    V++     L  K+     +   +++TM       ++    GD +++
Sbjct: 391 THAKGAVFIGRDAPLIEKEVDYPGLLKAHAKTMAEAVREARAMAKPGDTILL 442


>gi|186477423|ref|YP_001858893.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           phymatum STM815]
 gi|226711890|sp|B2JHG2|MURD_BURP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|184193882|gb|ACC71847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           phymatum STM815]
          Length = 504

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 150/462 (32%), Gaps = 78/462 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFIL----HAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           D+R + P     A++    +G+ F+       + +G  LV ++   ++ + +  +P+   
Sbjct: 41  DTREVPPN--LSALEAHGIEGN-FVGGPFSEVLLEGVELVAIS-PGLSPLAADLVPLIAT 96

Query: 89  DDVLG---------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
               G             L           +IAITG+ GKTTT  +  +      K  A 
Sbjct: 97  ARERGIPVWGELEFFAQALKTLGESGYAPKVIAITGTNGKTTTTSLTGLLCERAGKKVAV 156

Query: 140 IGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            G+ +      LT A       D  + EL    L       H   P  AVI  I   HL 
Sbjct: 157 AGNISPAALDKLTEAIDNTALPDVWVLELSSFQL----ETAHTFEPDAAVILNITQDHLD 212

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---N 255
              G++  A+AK +IF    K     LN DD+    L   S       + +FG ++   +
Sbjct: 213 WHGGLDAYAAAKGKIF---GKNTVRVLNRDDARVMTLA--SSEQSGAQLVTFGVNEPVRD 267

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSME---------------------------VVHHGI 288
            D+ L +           VQ Q +                                    
Sbjct: 268 GDYGLLR----DNGMIWLVQAQDRDATDEPAPTRRRKSESTAPPDIGLKRLMPADALRIR 323

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N L    +   +       +          G   R     +      +D+S   
Sbjct: 324 GLHNATNALAAFALARAIGLPGAPLLHG---LREYRGEPHRVELIASIEGVDYVDDSKGT 380

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AA+  L+Q       R + + G     G+        LAE ++ +    V L G
Sbjct: 381 NVGATVAALDGLAQ-------RVVLIAG-----GDGKGQAFDPLAEPVTRW-CRCVMLIG 427

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++ AL    I +    T++       +    GD V++
Sbjct: 428 RDAPQIRAALEHTGIAITDHATLEEATRAASAVAQPGDAVLL 469


>gi|258592730|emb|CBE69039.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           protein (folC) [NC10 bacterium 'Dutch sediment']
          Length = 452

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 100/301 (33%), Gaps = 29/301 (9%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
           VD+ + E+GM    +    T+++   +AVIT IA  H       +  IA+ KA I +G  
Sbjct: 155 VDYAVVEVGMGGRFD---ATNVLDAQVAVITNIALEHEEYLGKTLGAIAAEKAGIIKGAT 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +  T          E L   + A   +++  F      D+++   +         +  +G
Sbjct: 212 RVVTAV-----DVPEALAVITDACRKRSVTLFDIRSAYDWRIH--RSDLFGQRFSMGDKG 264

Query: 279 KSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +  E      +G H   N +  + +  +L      AI   S+           R  L  G
Sbjct: 265 QPAETFDIPLLGRHQVVNAIAAIAVSRLL-RTAGAAIPESSIREGLCRTRWPGRLQLFPG 323

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              LI +    NPA   A  + L +      GR   V G    + + +    +     L+
Sbjct: 324 RPLLILDG-AHNPAGAIALRAFLEEQR--FAGRLTLVFGV---LQDKNWIAMLQALAPLA 377

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKS 451
                 V L+        D         +       E +       ++     D VV+  
Sbjct: 378 K----RVILTRPESERAADPHRLLEAERFCPKIEILEDVAEAIALARTVTDPEDTVVITG 433

Query: 452 S 452
           S
Sbjct: 434 S 434


>gi|302533953|ref|ZP_07286295.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
 gi|302442848|gb|EFL14664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
          Length = 476

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 112/377 (29%), Gaps = 43/377 (11%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V DV  A        R    A  +AITG+ GKTTT +ML   L +     A +G+  
Sbjct: 95  VDVVGDVEIAWQ-----LRGEGAAPWLAITGTNGKTTTTQMLASILRAAGLKTAAVGNIG 149

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             I   +T        D    EL    L         VR H A +  +AP HL     +E
Sbjct: 150 TPIIDVVT---GDEQYDVLAVELSSYQL----HWAPSVRAHSAAVLNLAPDHLDWHGSME 202

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
             A+ K  I+EG   T     N  D   E L  ++          F         L    
Sbjct: 203 AYAADKGRIYEG--NTIACVYNVADPATERLVEEADVEEGCRAIGFTLGAPGPSMLGVVD 260

Query: 265 QCSEQSWMEVQLQGKSMEVVH----HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                       Q  + E+ H    +    H   N L    +      +       L  F
Sbjct: 261 GILVDRAFVANRQKNAQELAHVDDVNPPAPHNIANALAAAALARAFGVEPRAVRDGLRDF 320

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                   R            +D+S   N  + +A+++             +  +     
Sbjct: 321 ---RPDAHRVAFVDEVDGVRYVDDSKATNTHAAEASLAAFEP---------VVWIAGGLA 368

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD-----GLFL 435
            G          A+ L       V L G     + +AL R         ++      +  
Sbjct: 369 KGATFDELVQKSAKRLR-----GVVLMGADRALIAEALARHAPEVPVTDLERTDTGAMLA 423

Query: 436 FIQSSLV---DGDVVVV 449
            ++ +      GD V++
Sbjct: 424 AVREAARLAEPGDTVLL 440


>gi|119717289|ref|YP_924254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nocardioides
           sp. JS614]
 gi|119537950|gb|ABL82567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nocardioides sp.
           JS614]
          Length = 488

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 106/375 (28%), Gaps = 49/375 (13%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    +   + +TG+ GKTTT +ML   L +       +G+    I   +     P
Sbjct: 112 AWRLRDPDHRTPWLCVTGTNGKTTTVQMLDSILRAAGLRSIAVGNVGLPIVEAVM---DP 168

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D    EL    L      T  +    A +  +A  HL  +S     A+ K  I+E  
Sbjct: 169 EPYDVLAVELSSFQL----HYTDSMSAEAAAVLNVAEDHLDWYSSFGAYAADKGRIYE-- 222

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--------DFQL-RKWKQCSE 268
                   N  D   E L  ++  +       F              D    R + +  +
Sbjct: 223 RAQKACVYNVADPETERLVREADVVEGARAVGFTLGMPGVGMVGLVEDILADRAFIEQRD 282

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S  E+            G   H   N L    +              L  F        
Sbjct: 283 TSAAELCTISDLALHSPGGAAPHNIANALAAAALARAHGVSQGAVRDGLRAF---RPDRH 339

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R       G  T +D+S   NP    AA S L    P      IA        G L++  
Sbjct: 340 RIAVVGAAGGVTWVDDSKATNPH---AAQSSLLAYEPVVW---IA--------GGLAKGA 385

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSET-----------MDGLF 434
           H D         +  V L G     +  AL R    + V   E            M+ + 
Sbjct: 386 HFDDLVRAVRDRLRGVVLLGRDRDVIAGALSRHAPDVPVIVVEDDETEGDHGGRAMERVV 445

Query: 435 LFIQSSLVDGDVVVV 449
                    GD V++
Sbjct: 446 GAAAELARPGDTVLL 460


>gi|37523301|ref|NP_926678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gloeobacter
           violaceus PCC 7421]
 gi|62900564|sp|Q7NEZ5|MURD_GLOVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|35214305|dbj|BAC91673.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 441

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 90/289 (31%), Gaps = 42/289 (14%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L +        G+    +     L   P D D+ + EL    +         +RP
Sbjct: 122 LVGHILKTAGLRAPVCGNIGRPVTD---LLLEPEDYDWIVAELSSFQI----ESAQGIRP 174

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV TT  P HL+    +E  A+ KA +   L +     LN DD++       +     
Sbjct: 175 EVAVWTTFTPDHLNRHGTLERYAAIKAGL---LMQARRAVLNGDDAYL-----GARRSAW 226

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGI 302
              +       A   L     C         ++ + +  V      G H  QN+LM +  
Sbjct: 227 PDAWWTSTQAPAAVSLAGKDIC---------IENRPVLPVSAVRLPGAHNLQNVLMAVAA 277

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +           ++ F        R            I++S   N     AA+  L+ 
Sbjct: 278 CHLTGVGDAAIASGVASFIGVP---HRLEAVGEYRGVRFINDSKATNYD---AALVGLTA 331

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +        + + G   + GE        +AE  +      V L G   
Sbjct: 332 VPAPS----VLIAGGQAKTGESGPWL-RAIAERCAS-----VVLIGEAA 370


>gi|293603442|ref|ZP_06685867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
 gi|292818144|gb|EFF77200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
          Length = 510

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 128/413 (30%), Gaps = 54/413 (13%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A       D++    +  I V G  ++   AL  LA       +  ++ +TG+ GKTT  
Sbjct: 89  APAQAPAADLLREAEARGIEVVGEIELFARALADLAET--QEYRPRLLTVTGTNGKTTVT 146

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHL 181
            +    + +   +    G+ +      L  A +  D      + EL    L      T  
Sbjct: 147 ALTRDLIDASGLSVVAAGNISPAALTALMDA-LDNDALPQVWVLELSSFQL----ETTRS 201

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    AV+  +   HL    G++  A+AKA I   L       +N DD     +     A
Sbjct: 202 LMADAAVVLNVTQDHLDWHGGMDAYAAAKARI---LTMARIAIVNRDDPLTIAMVPTVSA 258

Query: 242 LGIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L ++   SFG+              Q   W   SE S  +        +           
Sbjct: 259 LNVR---SFGRDMPELVGDMGLELGQGVAWLVASEPSDFDEPAPPTRRKKDAPEPVRANG 315

Query: 294 -QNMLMTLGIVSILTA-------------DVDTAIKALSVFHPKEGRGKRYRCALNQ--G 337
             + LM +  + I                          +   +E  G+ +R A  +  G
Sbjct: 316 RMSRLMPVDALRIRGIHNALNALAALQLARCLDLGWGAMLRTLREYAGEPHRAAFVRQIG 375

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S   N  +  AA+  L Q         + + G   +  + S          + 
Sbjct: 376 GVDYINDSKGTNVGATVAALEGLGQ-------PVVLIAGGQGKGQDFSP------LIPVV 422

Query: 398 LYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   V L G     +   L    ++    +++             GD V++
Sbjct: 423 SRHARAVMLIGVDGPEIGRVLASTGVNCITVDSLHAAVRGAAELAQPGDAVLL 475


>gi|320449227|ref|YP_004201323.1| folyl-polyglutamate synthetase [Thermus scotoductus SA-01]
 gi|320149396|gb|ADW20774.1| folyl-polyglutamate synthetase [Thermus scotoductus SA-01]
          Length = 413

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 99/285 (34%), Gaps = 27/285 (9%)

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIR 176
           G+  ++E +   L  I+     + +    +   L L     + V+F + E+G   LG   
Sbjct: 83  GQPISQEAVLSLLEEIRPQAESLEATFFEVATALALLHFAREGVEFAVLEVG---LGGRF 139

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             T+   P ++V+T I   HL      + ++A  KA IF    K             E L
Sbjct: 140 DATNAAEPQLSVVTNIGHDHLEILGPTLRDVAREKAGIF---RKGVPALTAARGEGLEEL 196

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           + ++ A+G   ++  G+     F L   +   E     ++++G+        +G H A+N
Sbjct: 197 RERARAMGT-PLWVLGEE----FSLLGVEALGEGLAFRLRIRGEERTFRTRLLGPHQAEN 251

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           + +      +L A  +            E  G+  R     G   L+D     NP    A
Sbjct: 252 LALAAVSGRLLGAGWEAV---EKGLLRAENPGRLERLPWPGGKKLLLDG--AHNPEGAWA 306

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               L             VLG   E        H  +AE L    
Sbjct: 307 LRQALRFHGLLPAA---LVLGFSRE------KDHRAMAEALKGLG 342


>gi|149196463|ref|ZP_01873518.1| UDP-N-acetylmuramate-alanine ligase [Lentisphaera araneosa
           HTCC2155]
 gi|149140724|gb|EDM29122.1| UDP-N-acetylmuramate-alanine ligase [Lentisphaera araneosa
           HTCC2155]
          Length = 458

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 125/379 (32%), Gaps = 59/379 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLA 154
           ++   AA  +S    IA+ GS GKT+    +   + ++ K    I G Y+  +       
Sbjct: 104 SQAIAAAVDQSGLKAIAVAGSCGKTSVTAWIAATMRAMGKAPVMINGGYSPDLESDTHPG 163

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D+ IFE   S    + F      P ++++  +   H S    +E +        
Sbjct: 164 NFGDGSDYVIFEADESDGSLVNFT-----PELSLLLNMGDDHHS-KDKLEVMFKTF---- 213

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L+      +N      + L   +        +    S+ ADF L + +   +     +
Sbjct: 214 --LDNAKHALVN------DELAYLAKDHPSHKSF---LSEQADFSLSQVQHNQQGVTFSL 262

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                         G H A N L  +  ++     ++  + A+  F    G  +R+    
Sbjct: 263 NGDFVQTSQW----GVHSADNALAVIASLATCGFSLEEILPAMLAF---CGVRRRFELKG 315

Query: 335 NQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELS 385
                 L D+ Y  NP  + A I+         VL    PHG G     LG M E     
Sbjct: 316 RVKNVPLYDD-YAHNPQKIAACIAAAQAIYNGPVLVFFQPHGYGP----LGFMAE----- 365

Query: 386 QSFHIDLAEVLSLYN---ISHVWLSG------FHVLALKDALPR-SIHVHYSETMDGLFL 435
            +   +L  VL+  +      V+ +G           + ++  +  + V      +    
Sbjct: 366 -ALQRELEGVLNPQDKFVFLPVFYAGGTTSFKPTSKEVCESYAQAGLKVDELADRELCSA 424

Query: 436 FIQSSLVDGDVVVVKSSNS 454
           ++     D   ++V  +  
Sbjct: 425 YLAEQAKDYSCILVVGARD 443


>gi|32490957|ref|NP_871211.1| hypothetical protein WGLp208 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316007|sp|Q8D2Z4|MURD_WIGBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25166163|dbj|BAC24354.1| murD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 438

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 131/356 (36%), Gaps = 39/356 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +  + + AR  S+  IIAITGS GK+T   M+     +   +    G+       P    
Sbjct: 93  IGDIELFAREASRP-IIAITGSNGKSTVTSMIGAIALNSGLSVGIGGNLG----TPALDL 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213
                    I EL    L      T  ++   + I  +   H+  +  GI +    K +I
Sbjct: 148 LNEKSYQLYIIELSSFQL----ETTFNLKTIASSILNVTHDHMDRYPLGINQYRLIKLKI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           ++         +N DD     +    H         F   K         K+  + +WM 
Sbjct: 204 YKN---AKVKIINLDD----YMTWPVHK-NKSVCIGFSSHKGKYC----IKKHKKNNWMV 251

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V  +           G+H   N L++L    IL    + ++  L  F    G   R++  
Sbjct: 252 VNNKFLLKCSEMKISGFHNYLNALVSLIFSDILKIPREISLNTLKNFS---GLPHRFQII 308

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +   + I++S + N +S  AA+S +       +G    +LG     G+  ++  + L 
Sbjct: 309 HKKNNISWINDSKSTNVSSTIAALSSIK-----IKGNIHLLLG-----GDSKKANLLPLM 358

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +++    I  ++  G     L      S     ++T+    + I+ +L  GD+V++
Sbjct: 359 KIIRNKKI-KLYCFGKDAYLLSKI---STDSFINDTLYHSMIKIKENLNHGDIVLL 410


>gi|294791080|ref|ZP_06756238.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
 gi|294458977|gb|EFG27330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
          Length = 499

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 108/304 (35%), Gaps = 44/304 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           ++D +  + +  IP+    +V  A    A        A  I ITG+ GKT+T EM    L
Sbjct: 61  HSDFLTRVAARGIPIIS--EVEFAWQIRARNPISGQPAAWIGITGTNGKTSTTEMTAEIL 118

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +       +G+    IGVP++ A +  +    + EL    L      T+ ++   A IT
Sbjct: 119 QAASLAAPAVGN----IGVPVSQAAVDENNQALVVELSSFQL----HYTYSLQLEAAAIT 170

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE----------------- 233
            +A  HL    G E   + KA +++ ++K   +  N DD                     
Sbjct: 171 NLADDHLDWHGGFENYVADKARVYQHVKK--ALVYNADDPRVSQLARQARQAQLAQPAQL 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +A+S +  ++  ++ G+  +         +        Q  +        +      +
Sbjct: 229 AQQAQSDSTCLQVGFTLGQPADGQVGIDQGWIVSRTPLIPQGRLAALTDFPHLTEPDGTV 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             H+  + L  L + +       TA+   S        G R +          +   ++A
Sbjct: 289 YPHLLADALCALCLSAGYGVPAQTAL---SALQGFAPGGHRIQ-------KVAVYHKHSA 338

Query: 349 NPAS 352
           NP S
Sbjct: 339 NPDS 342


>gi|237793438|ref|YP_002860990.1| cyanophycin synthetase [Clostridium botulinum Ba4 str. 657]
 gi|229264115|gb|ACQ55148.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Ba4 str. 657]
          Length = 873

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 143/385 (37%), Gaps = 60/385 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G I+         + +IT +   H  L + + +E++A  KA
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQC 266
            + E ++K G + +N DD     +  +  +     I  F K+KN          +     
Sbjct: 593 LVGEAVKKDGYVVINADDEASINIINRMKS----KIILFTKNKNNPIIPQYLDNKNLVLY 648

Query: 267 SEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L 
Sbjct: 649 LDGDTIYLKKINKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLE 708

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F+ +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G  
Sbjct: 709 SFNNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP 763

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYS---- 427
              G+ + S  + +  +    N  ++++       G     + D L + I    +     
Sbjct: 764 ---GDRTNSSTLKVGNICGE-NFDYIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKL 819

Query: 428 ----ETMDGLFLFIQSSLVDGDVVV 448
               +  + L   I+SS   GD+V+
Sbjct: 820 NIILDEEEALKKAIESS-NPGDLVI 843


>gi|226947343|ref|YP_002802434.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
 gi|226840998|gb|ACO83664.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
          Length = 873

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 143/385 (37%), Gaps = 60/385 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G I+         + +IT +   H  L + + +E++A  KA
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQC 266
            + E ++K G + +N DD     +  +  +     I  F K+KN          +     
Sbjct: 593 LVGEAVKKDGYVVINADDEASINIINRMKS----KIILFTKNKNNPIIPQYLDNKNLVLY 648

Query: 267 SEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L 
Sbjct: 649 LDGDTIYLKKINKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLE 708

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F+ +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G  
Sbjct: 709 SFNNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP 763

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYS---- 427
              G+ + S  + +  +    N  ++++       G     + D L + I    +     
Sbjct: 764 ---GDRTNSSTLKVGNICGE-NFDYIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKL 819

Query: 428 ----ETMDGLFLFIQSSLVDGDVVV 448
               +  + L   I+SS   GD+V+
Sbjct: 820 NIILDEEEALKKAIESS-NPGDLVI 843


>gi|170288512|ref|YP_001738750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
 gi|226722953|sp|B1L9R9|MURD_THESQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|170176015|gb|ACB09067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
          Length = 430

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 109/345 (31%), Gaps = 49/345 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS         G++         +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSRRGFKTFLGGNFGTP-----AVEALEGEYDYYVLE 155

Query: 167 LGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   E  +L++ +      +  I+  HL   S  EE   +K +      +     
Sbjct: 156 MSSFQLFWSERPYLSNFL------VLNISEDHLDWHSSFEEYVDSKLKPAFLQTEGDLFV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N      E L+        K  +  G++                +  E+ + GK     
Sbjct: 210 YN---KHIERLRNLEGVRSRKIPFWTGEN--------------FATERELIVHGKKYT-- 250

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +  Q     L +  +     +     L +    +    R             ++
Sbjct: 251 --LPGNYPYQTRENILAVSILYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYND 308

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S      S  A +  LS        + + +   MC +G+  +  +    E  S   + H+
Sbjct: 309 SKA---TSTHAVLGALSNFD-----KVVLI---MCGIGK--KENYSLFVEKASP-KLKHL 354

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     L   + +  H    E M+  F         GDV+++
Sbjct: 355 IMFGEISKELAPFVGKIPHSI-VENMEEAFEKAMEVSEKGDVILL 398


>gi|2463563|dbj|BAA22556.1| MURD [Staphylococcus aureus]
          Length = 269

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 13/158 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       + T    G+      V   +A+     D+ + 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIG---YVASKVAQEVKPTDYLVT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +PHIA+IT I  AHL     +E   +AK +I++   +   +  
Sbjct: 166 ELSSFQLLGIEK----YKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLIC 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRK 262
           N    + +    +S  L  KT+Y F   +  D   ++ 
Sbjct: 222 N----YHQRQVIESEELKAKTLY-FSTQQEVDGIYIKD 254


>gi|150025421|ref|YP_001296247.1| Mur ligase family protein [Flavobacterium psychrophilum JIP02/86]
 gi|149771962|emb|CAL43436.1| Mur ligase family protein [Flavobacterium psychrophilum JIP02/86]
          Length = 452

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 133/394 (33%), Gaps = 47/394 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKTT   M+   +       A        +    
Sbjct: 87  LKIYSYPEFLYEQSKNKTRVVIGGSHGKTTITSMILHVM--HYHNIAVDYMVGAQLEGFD 144

Query: 152 TLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  + DF + E     S   ++R   HL +P+IA+I+ IA  H++ F   E   + 
Sbjct: 145 TMVHLTEENDFMVLEGDEYLSSPTDLRPKFHLYQPNIALISGIAWDHINVFPTYENYVAQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                + +   G +  N DD   + + A++    I+ I          +    +      
Sbjct: 205 FEIFIQKITNGGILVYNEDDLEVKRV-AEASTNPIRRI---------PYHTPNYSVNDGI 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +E        ++     G H   N+     I   +  D     +A++ F   +G  KR
Sbjct: 255 TLLETP----EGDMPIEVFGAHNLNNLAGAKWICQNMGVDEADFYEAIASF---KGASKR 307

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +    +  + +  +P+ + A    + +  P+     +A L    E+   S S +
Sbjct: 308 LE-KIAESKTKVAYKDFAHSPSKVAATTKAVKEQYPN--RNVVACL----ELHTYS-SLN 359

Query: 390 IDLAEV---LSLYNISHVWLSGFHVLALKD-----------ALPRSIHVHYSETMDGLFL 435
            +  +       Y    V       + +K            A  R   + Y+        
Sbjct: 360 AEFLKEYEGALQYADVAVVFYSPDAVKIKQLEEVTYEQIAKAFNREDLIIYT-NPKDFKD 418

Query: 436 FIQSSLVDGDVVVVKSS---NSCGFYRLINLLLE 466
           ++ +  ++   +++ SS       F  +  L++ 
Sbjct: 419 YLFNLNLENSALLLMSSGNYGGLNFDEVKELIIN 452


>gi|83748764|ref|ZP_00945779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|207744403|ref|YP_002260795.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724585|gb|EAP71748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|206595808|emb|CAQ62735.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
          Length = 550

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 127/408 (31%), Gaps = 68/408 (16%)

Query: 78  IGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               ++PV+G  ++   AL  L  A        ++AITG+ GKTTT  +         KT
Sbjct: 140 ARERTVPVWGEIELFARALAGLKSA--QGYAPRVLAITGTNGKTTTTALTGALARRAGKT 197

Query: 137 YACIGSYNNHIGVPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               G+ +      LT    A    DV   + EL    L      TH +    A I  I 
Sbjct: 198 VGVAGNISPSALDKLTECVDAGTLPDVW--VLELSSFQL----ETTHTLAADAATILNIT 251

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +   A+AK  IF          LN  D+   +  +K          +FG  
Sbjct: 252 QDHLDWHGSMAAYAAAKGRIF---GAGTVRVLNRQDAEVMMFASKGGGD-----VTFGID 303

Query: 254 KNADFQLRKWKQCSE-------------------------------QSWMEVQLQGKSME 282
           + A  +     +                                   + + V+L+     
Sbjct: 304 EPATPEALGLLRDGGMHGGMPWIVLAEADNDDLPKPARRKKGDTTPAAPVPVRLKRLMPA 363

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H A N +  L +   +       +          G   R             
Sbjct: 364 DALRIRGLHNATNAMAALALCRAIGLPASALLHG---LRDYAGEPHRVELIAAFDDIEFF 420

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  AA+S LS+         + + G   +  + S      LA  ++ Y   
Sbjct: 421 DDSKGTNVGATVAALSGLSK-------HVVLIAGGEGKGQDFSP-----LATPVAQY-AR 467

Query: 403 HVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ AL    + +  + T++       +    GD V++
Sbjct: 468 AVVLIGRDAPQIRAALADSGVELVEAPTLEAAVQEAVARAQPGDAVLL 515


>gi|225166180|ref|ZP_03727897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Opitutaceae bacterium TAV2]
 gi|224799574|gb|EEG18086.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Opitutaceae bacterium TAV2]
          Length = 207

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 22/202 (10%)

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +       +   MA+N  + +     L          L+ + P   RG+      N+   
Sbjct: 6   TRTFTLPRVTDGMARNAALAIRAALHLGVSAAEIQTRLARWTPPPLRGEWRTDTHNR--- 62

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-- 397
            L  + YNANPASM  A+   +  +   +  R+ ++G M E+G  S   H DL   L+  
Sbjct: 63  RLYLDCYNANPASMLDALETFAATATPPDAPRLYIIGCMEELGPESARHHADLGRALAAL 122

Query: 398 LYNISHVWLSGFHVLALK-------DALPRSIHV--------HYSETMDGLFLFIQSSLV 442
           L     V   G H   +        DA  R +           +S+T   L     ++L+
Sbjct: 123 LRADDEVIAIGPHAEHVARASRPPDDAQRRPVKCSTLNVKCLTFSDTPAALASPATAALL 182

Query: 443 DGDV--VVVKSSNSCGFYRLIN 462
                 + VK S      RL+ 
Sbjct: 183 ASHCGPMFVKGSRRHALERLVE 204


>gi|237813921|ref|YP_002898372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei MSHR346]
 gi|237503239|gb|ACQ95557.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           pseudomallei MSHR346]
          Length = 508

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 146/461 (31%), Gaps = 72/461 (15%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLVVVN----------TDMVASI 78
           D+R   P     A+     D    G  F    V  G  LV ++            +VA+ 
Sbjct: 41  DTRETPPN--LAALTAAGVDFEFVGGAFSPALVDGGIELVALSPGLSPLAEDLAPLVAAA 98

Query: 79  GSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K  
Sbjct: 99  RERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGKKV 155

Query: 138 ACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   H
Sbjct: 156 AVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQDH 211

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L    G    A+AK  +F          LN DD+        + A       +FG ++ A
Sbjct: 212 LDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNEPA 268

Query: 257 ---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              D+ L                         + ++    +  ++ L+           G
Sbjct: 269 ADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRIRG 328

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L    +   +       +          G   R            +D+S   N
Sbjct: 329 LHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGTN 385

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +  AA+  L+Q +    G      GD    G+  +     +A          V L G 
Sbjct: 386 VGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLATPVARWCRA-----VMLIGR 432

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              AL++AL    + +    T++       +    GD V++
Sbjct: 433 DAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 473


>gi|75907016|ref|YP_321312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anabaena
           variabilis ATCC 29413]
 gi|122063235|sp|Q3MF19|MURD_ANAVT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|75700741|gb|ABA20417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anabaena
           variabilis ATCC 29413]
          Length = 455

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 127/353 (35%), Gaps = 38/353 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A R       + ITG+ GKTTT  ++     +        G+   +    + LA
Sbjct: 92  IGEMELAWRHLKSLPWVGITGTNGKTTTTALIAAIFQAAGFDAPACGNIG-YAACEVALA 150

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             P D   G  E+    +      +  + PHI++ TT  P HL+    +E     KA++ 
Sbjct: 151 ATPPDWIIG--EMSSYQI----ESSLTLAPHISIWTTFTPDHLARHKTLENYYDIKAKL- 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L ++     N DD++   + A        T       K  D+ +       E  W+  
Sbjct: 204 --LRQSHLQVFNGDDAYLSKIGASHWPDAYWTSV-----KGKDYLIGDKGFYIEDGWVVE 256

Query: 275 QLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           QLQ  S             +G H  QN+LM +    +     +   KA+  F    G   
Sbjct: 257 QLQPNSSPQRIVAAEALRMVGAHNLQNLLMAVAAARLADIPPNAIDKAVREF---PGVAH 313

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R            I++S   N  + +  ++ +           I + G   + G+ +   
Sbjct: 314 RLEHICTWQGIDFINDSKATNYDAAEVGLASVKS-------PVILIAGGEAKPGDDAAW- 365

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
              LA++      S V L G    A    L    + +Y E ++ +   ++ SL
Sbjct: 366 ---LAKI--QGQTSAVLLIGNAAPAFAQRLQEIGYSNY-EIVETMEQAVRRSL 412


>gi|229184422|ref|ZP_04311629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228599218|gb|EEK56831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
          Length = 124

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G  +        ++G+ IDS++I     F  I     DGH+++  ++  
Sbjct: 10  MNLKKLEEVINGGGLHESFHHLEIHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA   +             +P+  VDD L AL +LA   R      +I ITGS+ K
Sbjct: 69  GAVASLWKKSYGTPPKG--VPIIFVDDTLFALQQLAQFYRREINVKVIGITGSMAK 122


>gi|325959984|ref|YP_004291450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Methanobacterium sp. AL-21]
 gi|325331416|gb|ADZ10478.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Methanobacterium sp. AL-21]
          Length = 407

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 103/298 (34%), Gaps = 56/298 (18%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            I +TG+ GKTT+  ML   L          G+          L     + ++ +  + +
Sbjct: 97  TIGVTGTNGKTTSCHMLNEILVEAGYKVLMGGNAGGGFDGYTQLTIQANESNYDVMIVEV 156

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             +  + F + +    + ++T +   H+ +   +E   S+  +    L+    + LN +D
Sbjct: 157 CDMT-LDFASRIFEFDMVLVTNMGYDHMEHHQSMENYRSSVDKF---LKDVDQVVLNGND 212

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +  K                S+NA +   + +                        G
Sbjct: 213 PMLKGCK----------------SRNAQYFDSEVRD-------------------LKLFG 237

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N      + SIL  +     + LS F   EG   R +     G   +I ++   N
Sbjct: 238 SFNQENASGAFKVASILGVEPKLINEVLSSFEAVEG---RIQTLKLNGSEIIIGKT--DN 292

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P S  A   VLS+  P      I ++G        ++ F  ++ + +++ + S V L 
Sbjct: 293 PDSTSA---VLSEAQPD-----IVIIGTP----RRNEKFRYNILKEVAMADPSEVVLF 338


>gi|21243635|ref|NP_643217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|30316065|sp|Q8PII9|MURD_XANAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21109211|gb|AAM37753.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 468

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 131/360 (36%), Gaps = 36/360 (10%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL     A    S   ++ ITG+ GK+TT  +L   L +     A +G+    +     L
Sbjct: 101 ALWFAEHAQADGSVPGVVCITGTKGKSTTTALLAHVLRAAGHRTALVGNIGQPLLE--VL 158

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A  P    + + EL     G++       RP +A++  + P HL            K  +
Sbjct: 159 APQPPPAYWAV-ELSSYQTGDVGR--SGARPQLALVLNLFPEHLDWHGDEARYVRDKLSL 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWM 272
                      LN  D     L+     L    +  F  ++ A + LR +     EQ+  
Sbjct: 216 VTEGRPR-IALLNAADPLLAGLQ-----LPDSQVRWF--NQPAGWHLRGEVVYRGEQAIF 267

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +               G H  +N+   L  V  L  D      A + F P      R + 
Sbjct: 268 D--------TADVPLPGEHNRRNLCAVLAAVEALGLDAAALAPAAASFRPLP---NRLQL 316

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             +    + +++S +  P +  AA++  ++       RR+A+L    + G     F   +
Sbjct: 317 LGSVDGISYVNDSISTTPHASLAALACFAR-------RRVALLVGGHDRGLDWHDFAQQM 369

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD-GDVVVV 449
           A+      I  +  +G  + AL   L  + H   H +  ++      +++L + G VV++
Sbjct: 370 AQQA-PLEIVTMGANGPRIHALLAPLAEAGHFGLHAANDLEHAMGLARNALGEQGGVVLL 428


>gi|226227161|ref|YP_002761267.1| folylpolyglutamate synthase [Gemmatimonas aurantiaca T-27]
 gi|226090352|dbj|BAH38797.1| folylpolyglutamate synthase [Gemmatimonas aurantiaca T-27]
          Length = 430

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 126/420 (30%), Gaps = 75/420 (17%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----------YNNH 146
           L+       +  +  I G+ GK +T   L   L    +      S            N  
Sbjct: 31  LSRLGDPHRRYPVFHIAGTNGKGSTVATLDALLRGAGRKVGRYTSPHLVDFAERVVVNGE 90

Query: 147 IGVPLTLARMPVDVDFGIFELGMS-------------------------HLGEIRFLTHL 181
                 +    V  +  + ELG +                          LG     T++
Sbjct: 91  PMSHAAITEWLVTHEPLLTELGATFFEATTAMALSHFANEAVDVAIIEVGLGGRLDATNI 150

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAK 238
           V P  A +T I   HL      +E IA  KA IF    K G   +  D   +  ++L+A+
Sbjct: 151 VEPIAAAVTQIGFDHLEFLGDTLEAIAGEKAGIF----KPGAAAVVGDTRPAIRDMLQAR 206

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----VHHGIGYHMAQ 294
           +  +G   +   G+    D+Q+      ++ +   + +   +           +G   A 
Sbjct: 207 AEGVGSGPVLVTGR----DWQVDDIVVDAQGTSFTLAVADGAGHHTRRLTTPLVGQFQAH 262

Query: 295 NMLMTLGIVSILTADVDTA-IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           N  + L ++             A          G+ +R                 NP   
Sbjct: 263 NASVALALLRSAGGPWAEIERNASRYLADVRIAGRFHRSPP-------WLFDVAHNPDGA 315

Query: 354 KAAISVLSQIS-PHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVLSLYNISHVW-LSG 408
              ++ L  +  PH     + VL D      +  +S++    L  +      +  W L  
Sbjct: 316 ATVVANLLAVGVPHPLTAVVCVLRDKDWRGILQAVSRAAERILVTMAPTAPANRTWNLDD 375

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN---SCGFYRL-INLL 464
               A  + LP    V   +  D     +  + V    V+V  S         RL ++ L
Sbjct: 376 VMAWAEAEGLP----VQRYDDFD---RALSEAQVGAATVLVTGSFHTVGDAMERLQVDPL 428


>gi|220912337|ref|YP_002487646.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859215|gb|ACL39557.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 525

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 106/345 (30%), Gaps = 35/345 (10%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            IPV+G  DV  A        R  +    +AITG+ GKTTT  +    L +       +G
Sbjct: 117 HIPVWG--DVELAWRVRRREGRKTAD--WLAITGTNGKTTTVGLTESMLRAAGLKAIAVG 172

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +    I   +   R PV+ D    EL    L         + P  +V   +A  H+    
Sbjct: 173 NVGKPILDAI---REPVEYDVFAVELSSFQL----HWAESLSPLASVCLNVAEDHVDWHG 225

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             +   + KA+++E  +K      N +    E +   +  +       F     A   L 
Sbjct: 226 SYDSYLADKAKVYERTQK--ACLYNAEQFETERMVENADVVEGCRAIGFTTVTPAISMLG 283

Query: 262 KWKQCSEQSWMEVQLQGKSME-----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +          + +  + E      +      HM  N L   G+V     D     + 
Sbjct: 284 VVEGLLVDRAFIEERRDSAAELAAMADLGPIAPRHMVANALAAAGLVRAYGVDAAAVRQG 343

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                       R +          +++S   NP +  A+++  +          +  + 
Sbjct: 344 ---IRDYVPGDHRIQPVARHEGVLWVNDSKATNPHAAAASLAAFTN---------VVWIA 391

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                G        + A  L       V L G     L  AL R 
Sbjct: 392 GGLSKGVTYDDLVREQAHRLKA-----VVLIGTDSTELAGALQRH 431


>gi|148269826|ref|YP_001244286.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
 gi|166224768|sp|A5IKI7|MURD_THEP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147735370|gb|ABQ46710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
          Length = 430

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 109/345 (31%), Gaps = 49/345 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS         G++         +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSERGFKSFLGGNFGTP-----AVEALEGEYDYYVLE 155

Query: 167 LGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   E  +L++ +      +  I+  HL   S  EE   +K +      +     
Sbjct: 156 MSSFQLFWSERPYLSNFL------VLNISEDHLDWHSSFEEYVDSKLKPVFLQTEGDLFV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N      E LK        K  +              W   +  +  E+ ++GK     
Sbjct: 210 YN---KHIERLKDLEGVRSRKIPF--------------WTDENFATEKELIVRGKRYT-- 250

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +  Q     L +  +     +     L +    +    R             ++
Sbjct: 251 --LPGNYPYQMRENVLAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYND 308

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S      S  A +  LS        + + +   MC +G+  +  +    E  S   + H+
Sbjct: 309 SKA---TSTHAVLGALSNFD-----KVVLI---MCGIGK--KENYSLFVEKASP-KLKHL 354

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     L   + +  H    E M+  F         GDV+++
Sbjct: 355 IMFGEISKELAPFVGKIPHSI-VENMEEAFEKAMEVSEKGDVILL 398


>gi|167945530|ref|ZP_02532604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 305

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 104/281 (37%), Gaps = 25/281 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GK+T   +L           A  G+          L  +  DV   + E
Sbjct: 34  NAPIIAITGSNGKSTVTTLLGEMAKVAGLNVAVGGNLGEP-----ALDLLDEDVQLYVVE 88

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +R  +AV+  IA  H+  +  +++  +AKA ++   E+     +N
Sbjct: 89  LSSFQL----ETTQSLRAKVAVVLNIAADHMDRYVSLDDYIAAKAVVYRNAEQR---VVN 141

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVH 285
            DD     + A          ++ G+ +  DF +R+           E+ +         
Sbjct: 142 RDDPRVVAMVADLDNTLG---FTLGEPEGEDFGVRRVAGKRWLCRANELLMPAAD----L 194

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L + S     +   ++AL  F    G   R      +      ++S
Sbjct: 195 RIPGEHNLANGLAALALGSAAGLAMAPMLEALRGF---CGLPHRTEFIAEKRGLRWYNDS 251

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              N  +  AA+  L     HGE R + + G  C+  + S+
Sbjct: 252 KGTNVGATAAALEGLH--PEHGESRTVLIAGGDCKGADFSE 290


>gi|163868715|ref|YP_001609927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           tribocorum CIP 105476]
 gi|161018374|emb|CAK01932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           tribocorum CIP 105476]
          Length = 464

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 100/316 (31%), Gaps = 26/316 (8%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +F+   +  G  L+      V       +I + G  +  V    + L            I
Sbjct: 65  EFVALVLAPGVPLIYPKPHWVVEKARKENIEIIGDIELFVRARHHFLQHYDFCDQDIPFI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L   L  +       G+    I                + E     
Sbjct: 125 AITGTNGKSTTTALLAHLLEKMGYDVQVGGNIGQAIL----TLEPFAKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     L   ++P I ++  + P H+            K ++     +    F++ DD+ 
Sbjct: 181 ID----LAPSLQPTIGLLLNLTPDHIDRHGSFARYVQTKKQLVAQASQ---AFISVDDAA 233

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--- 288
            E+L  +    G K      ++ + D  +             V+   + M      +   
Sbjct: 234 CEILYQQLLHEGHKI-----EAISKDHFVENGFYAEGTKLFSVRQGERHMLANLASVATL 288

Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H AQN LM L  +  L     T           +G   R +     G    I++S  
Sbjct: 289 RGDHNAQNALMALAALQALKI---TDRSLNKHLASYKGLPHRMQQVRKMGTILFINDSKA 345

Query: 348 ANPASMKAAISVLSQI 363
            N  +   A+   + I
Sbjct: 346 TNADATAPALCAFNDI 361


>gi|256825479|ref|YP_003149439.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
 gi|256688872|gb|ACV06674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
          Length = 528

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 123/386 (31%), Gaps = 50/386 (12%)

Query: 62  QKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           ++GA +VV +      T ++ +     IPV+   ++   +     AA        + +TG
Sbjct: 110 EQGAEVVVTSPGLRPSTPLLEAARRAGIPVWSEVELAWRMRPSQGAA------PWLCVTG 163

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GKTT   MLT  L +  +     G+    I   +     P        EL    L   
Sbjct: 164 TNGKTTVVRMLTAMLEAGGERAVAAGNVGTPIMEAI---LDPTRFGAIAVELSSFQLHH- 219

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
              T  V P  + +  IA  H+     IE  A  K  I            N  D     L
Sbjct: 220 ---TWTVSPEASCVLNIAADHVDWHGSIEAYAGDKGRIHHN--AQVAAVYNVQDEVTRTL 274

Query: 236 KAKSHALGIKTIYSFGKSKNA--------DFQL-RKWKQCSEQSWMEV-QLQGKSMEVVH 285
             ++  +       FG             D    R +    + S  E+  L+  + + V 
Sbjct: 275 VEQADVVEGCRAVGFGLGTPGLSELGLVEDVLADRAFVDDRQNSAAELGTLEDLTRDGVA 334

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                H+  N L    +              L  F        R    L     T +D+S
Sbjct: 335 PAP--HLVANALAAAALARAHGVQPAAIRAGLRAFRADP---HRMETVLVADGITWVDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +  AA++           R + V G     G+L  +   +L   ++   +  V 
Sbjct: 390 KATNPHAAAAALTA--------SDRIVWVAG-----GDLKGAEVDELVAAVADR-LQAVV 435

Query: 406 LSGFHVLALKDALPRSIHVHYSETMD 431
           L G     + +A+ R       + ++
Sbjct: 436 LLGKDARVIAEAVARHAPEVPVDHIE 461


>gi|317122782|ref|YP_004102785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592762|gb|ADU52058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 592

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 90/277 (32%), Gaps = 23/277 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LLQ +     G      V  I   S  +   + F AI G  ++G  F   AV++GA  V+
Sbjct: 8   LLQGLTFRVAGAPAPPQVAEIRTHSSRVQRGDLFVAIPGRRHNGVAFAGEAVRRGAR-VI 66

Query: 70  VNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V            +    V D     +            +  ++ ITG+ GKTTT  +L 
Sbjct: 67  VAEQPPPGPLPPGVTWIQVPDARAALSRLAANRYGHPAGRLLVVGITGTTGKTTTALLLH 126

Query: 128 IALSSIKKTYACIGSYNN-----------HIGVPLTL---ARMPVDVDFGIFELGMSHLG 173
             L +       +GS                  PL L    R  V        + +S  G
Sbjct: 127 HLLKAAGWRAGLVGSLEVDTGRRRFTGRLTTPDPLELHGYLREMVTAGCTAVVMEVSSQG 186

Query: 174 EIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +     V   + V+T +AP  H+      +  A+AKA     +   G + +       
Sbjct: 187 VDQRRVDDVPFALGVVTNLAPLEHMEYHPTYDHYAAAKARFVAMIPPHGGVLM-----HE 241

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
               A+        +  FG+      +L   +  +  
Sbjct: 242 GEAAARLGPAARAPVVHFGRGPRCALRLLDEEPVAVG 278



 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 25/178 (14%)

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H A N++  +G    L    D   +A+  F        R    L Q  FT+ID+
Sbjct: 373 TRLLGSHHALNVVAAVGAALWLGIHPDLVARAVPAFPAPP----RRTEVLMQYPFTVIDD 428

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-LSQSFHIDLAEVLSLYNISH 403
           +    P S+ A   V S+I      R +AV       GE L+ +  + LA          
Sbjct: 429 T-AGRPDSLAACFKVASRIP---HRRLVAVFAVRGRRGEALNYANGLQLACEARRLRAQL 484

Query: 404 VWLSGFHVLALKDALP----------------RSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  +   V    DA+                 RS  V     +D       + L +GD
Sbjct: 485 IITASLEVTGPDDAVQPAEWEACLAGLEAGGLRSSDVETHARLDDAIAAAVARLREGD 542


>gi|254673379|emb|CBA08659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 260

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R    +IAITGS GKTT   ++              G+    + +     R     D  +
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV-LEAEWQREGKKADVWV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +RP  A +  I+  HL  +  + + A  KA+IF G    G   
Sbjct: 166 LELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218

Query: 225 LNYDDSFFELLK 236
           LN DD+F   +K
Sbjct: 219 LNADDAFCRAMK 230


>gi|309783019|ref|ZP_07677738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ralstonia sp.
           5_7_47FAA]
 gi|308918127|gb|EFP63805.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ralstonia sp.
           5_7_47FAA]
          Length = 499

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 129/398 (32%), Gaps = 62/398 (15%)

Query: 83  IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +PV+G  ++   AL  L  A        ++AITG+ GKTTT  +    +    KT    G
Sbjct: 98  VPVWGEIELFARALAGLKAA--QGYAPRVLAITGTNGKTTTTALTGALVQRSGKTVGVAG 155

Query: 142 SYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           + +      L+   +  D   D  + EL    L      TH +    A +  I   HL  
Sbjct: 156 NISPSALDKLSEC-VDADTLPDVWVLELSSFQL----ETTHTLDADAATVLNITQDHLDW 210

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A+AK  IF          LN  D+      +K+         +FG  +     
Sbjct: 211 HGTLEAYAAAKGRIF---GANTVRVLNRQDAGVMAFASKNGGD-----ITFGIDEPGTPD 262

Query: 260 LRKWKQCSEQSWME---------------------------VQLQGKSMEVVHHGIGYHM 292
                +     W+                            V+L+           G H 
Sbjct: 263 ALGLLRDGGMPWIVLAEAEQDELPKPTRRKKGDNAPAATVPVRLKRLMPADALRIRGLHN 322

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N +  L +   +   V   +          G   R             D+S   N  +
Sbjct: 323 ATNAMAALALCRAIGLPVSALLHG---LRDYAGEPHRVELIAAFDDIEFFDDSKGTNVGA 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             AA+S LS+         + + G   +  + S      LAE ++ Y    V L G    
Sbjct: 380 TVAALSGLSK-------HVVLIAGGDGKGQDFSP-----LAEPVAQY-ARAVILIGRDAP 426

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +++AL    + +  + T++       +    GD V++
Sbjct: 427 LIREALANTGVALIDAPTLEAAVQEAAAHAQPGDAVLL 464


>gi|300788099|ref|YP_003768390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
 gi|299797613|gb|ADJ47988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
          Length = 469

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 125/413 (30%), Gaps = 47/413 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKA 108
           G + +    +  + +V+V T       S  + V   +  +  +  + +A R         
Sbjct: 49  GAELVPGLTEPPSDVVLVVTSPGWRPTSPLL-VAAAEAGVEVIGDVELAWRVGRLREHPP 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           + + +TG+ GKTTT  ML   L++        G+          L  +    D    EL 
Sbjct: 108 SWLVVTGTNGKTTTVGMLESILNAAGSNAVACGNIGY-----AALDAVRAGYDVLAVELS 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      +  + P  A +  +A  H+     ++E A+AK  ++    +      N D
Sbjct: 163 SFQL----HWSSTLAPDAAAVLNLAEDHIDWHGSMDEYAAAKGRVY---TRAKVAVHNAD 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--- 285
           D +   + A+    G   +  F        +L   +            +  +  +     
Sbjct: 216 DDWSTRIAAEHAPEGTPRV-GFQLDTPRAGELGVVEDLLVDRAFVADPENSAEALATLAD 274

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L    +        D   K L  + P      R            +++
Sbjct: 275 VRPAGPHNVANALAAAALARAHGVSPDAVAKGLREYQPAP---HRAVEVAEVAGVRYVND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   NP +   ++   + I     G+           G         +A  L       V
Sbjct: 332 SKATNPHAAAGSLRAHASIVWIAGGQLK---------GASVDELVSSIAGRLR-----GV 377

Query: 405 WLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     +  A+ R        S+     E M        +    GDVV++
Sbjct: 378 VLLGVDSPVIAAAVARHAPDVPVNSLRPGDDEPMTAAVSAASAMARPGDVVLL 430


>gi|297621609|ref|YP_003709746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376910|gb|ADI38740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 415

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 89/270 (32%), Gaps = 51/270 (18%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TG+ GKTT  +++   L+   K    +G+      +PLT     +  +  + E
Sbjct: 102 DQPMIAVTGTNGKTTVTQLIGHVLNRCGKPAKVLGNGG----IPLTAELDALQKEMIVCE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L   V   +  +  I P HL  +  +E  A AK  +   L+    +FL 
Sbjct: 158 LSSYQL---ETLNSRVV-DVGAVLNITPDHLDRYLNMEAYAKAKLRLANCLKSDKKLFL- 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                             + I  FG      + +   K+  E            ++  + 
Sbjct: 213 ----------------SQQVINDFG------YLISDLKENVEL----------IVDSNYK 240

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
               H  +N L    I   +    +    A S F        R      +   +  ++S 
Sbjct: 241 SRLTHDEENCLAAKRICLEMGVLPEAFDCAESEFQKPP---HRIEFVRKRRGVSYFNDSK 297

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376
             N  ++K A+          +G  I + G
Sbjct: 298 GTNLDAVKRAVE-------RMDGPVILIAG 320


>gi|120609548|ref|YP_969226.1| UDP-N-acetylmuramate [Acidovorax citrulli AAC00-1]
 gi|120588012|gb|ABM31452.1| UDP-N-acetylmuramate [Acidovorax citrulli AAC00-1]
          Length = 473

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 114/365 (31%), Gaps = 34/365 (9%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  +     ++A+ G+ GKTTT  ML   L          +G      GV   L    
Sbjct: 102 WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWVLECAGLQPGFLVGGVPLDFGVSARLGAAQ 161

Query: 158 VDVDF---------GIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEI 206
             V            + E            +  V  RP  AV+  +   H   F  +  I
Sbjct: 162 RPVAQDGPAGGAPLFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAI 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                 +   +  +G +  N      E L    H      + SFG +  +DF  R     
Sbjct: 222 ERQFHHLVRTVPPSGRVVFNG---LEESLARVLHQGCWSGVASFG-AAVSDFTAR----- 272

Query: 267 SEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            E    +V   G ++  V     G H   N L  +     +      A  AL  F   + 
Sbjct: 273 GEPQAFDVLRGGHAVGRVEWELSGVHNQLNALAAIAAADHVGVAPAEAAAALGRFRNVK- 331

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +R       G   + D+ +  +P +++  +  L +     + R +A      E    +
Sbjct: 332 --RRMELRGTAGGVAVYDD-FAHHPTALRTTLDGLRR-RVGPDARILAAF----EPRSNT 383

Query: 386 QSFHIDLAEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                  A++   L   +++    +G    A +   P       +  +  L   I  +  
Sbjct: 384 MKLGTMKAQLPWALEAADLAFCHTAGLDWDAAEALAPLGSRACTAGDIATLVERITEAAR 443

Query: 443 DGDVV 447
            GD V
Sbjct: 444 PGDHV 448


>gi|254414291|ref|ZP_05028058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178966|gb|EDX73963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 465

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 133/390 (34%), Gaps = 50/390 (12%)

Query: 80  SLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              IPV       G   + ++ +A R    +  + ITG+ GKTTT  ++     +     
Sbjct: 76  PWDIPVLIEARNRGIDTIGEMELAWRYLKSSPWVGITGTNGKTTTTALIAAIFQAAGFHA 135

Query: 138 ACIGSYNN-------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              G+                  G  L        +D+ I E+    +   R L     P
Sbjct: 136 PACGNIGYAACELALAQPDKTRHGASLHEKLPQSKIDWVIAEVSSYQIESSRELA----P 191

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V TT  P HL+    +E   + KA++   L ++     N DD +   L         
Sbjct: 192 TIGVWTTFTPDHLNRHKTLENYYTIKADL---LSRSHDQIFNGDDPYLRQL---GTTHWS 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K  ++  K ++A  +   +    E  W+ V+ +          +G H  QN+LM +    
Sbjct: 246 KAYWTSVKGRDATPRPWVYI---ENGWVMVESEPIVPVDSLRMVGNHNQQNLLMAVAAAR 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A ++      +      G   R    +       I++S   N  + +  ++ +    
Sbjct: 303 --LAGIEKQAIVEA-ITNFPGVPHRLEHIITWQGIDFINDSKATNYDAAQVGLAAVDS-- 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  I + G   + G+ +Q  +   A+  +      V L G    A    L    + 
Sbjct: 358 -----PVILIAGGEAKAGDDTQWLNAIQAKAAA------VLLIGEAASAFAQRLQEVGYF 406

Query: 425 HYSETMDGLFLFI--QSSLVDGD---VVVV 449
            Y E ++ +   +   + L   D   VV++
Sbjct: 407 RY-EIVETMARAVPRAAELAQQDNAPVVLL 435


>gi|52425669|ref|YP_088806.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307721|gb|AAU38221.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 453

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 130/368 (35%), Gaps = 30/368 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  MLT  L          G     I     ++    D  + + E   
Sbjct: 106 VLAVSGTHGKTTTTGMLTWILEQNGLN---PGFLIGGIAGNFGMSSRFTDSPYFVIEADE 162

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   +I  I   H   F  ++ I      +   +  +G I    
Sbjct: 163 YDTAFFDKRSKFVHYNPKTLIINNIGFDHADIFDDLKAIQRQFHHMIRTIPASGRIL--- 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286
                E    ++  +G  +   F   K  ++   +    ++ S   V   G+ +  VH  
Sbjct: 220 -SVATEQSVKETLDMGCWSEKQF-LGKEQEWNAERI--TNDCSRFAVFHLGEKVAEVHWD 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +         ++ A +AL+ F   +   +R       G  T+ D+ +
Sbjct: 276 IVGQHNMHNALMAIAAAYHAGVKIEDACRALATFVNAK---RRLEVKGEVGGVTVYDD-F 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISH 403
             +PA ++A ++ L      G  R +AVL    E    +     H D +A  L   +   
Sbjct: 332 AHHPAEIQATLTALRD-KVGGGVRILAVL----EPRSNTMKMGVHKDEIAPALVRSDYVF 386

Query: 404 VWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCGFYR 459
           +         + +   + +    ++  +D L  F+       D ++V    S       +
Sbjct: 387 LLQPDNIPWEVVEIANKCVQPTKWTADLDKLVDFVVQEAQPTDHILVMSNGSFGGIHQ-K 445

Query: 460 LINLLLEE 467
           +++ L  +
Sbjct: 446 ILDKLANK 453


>gi|291288105|ref|YP_003504921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885265|gb|ADD68965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 416

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 110/351 (31%), Gaps = 48/351 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A+  +   ++A+TG+ GK+T   ++   L          G+    IG+P   A       
Sbjct: 77  AKRPTDTVVVAVTGTNGKSTVTTLIAQILKKCGLEAVACGN----IGLPYAEAVTGGAYG 132

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL     G ++  +        V+T +A  H+  +  +++ A  K  +   L+  G
Sbjct: 133 AYVVELSSFQTGMLQHFSA----DCVVVTNLAEDHMDRYRDMDDYADDKMNLLRFLKPEG 188

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +  D    E L  KS      T+    +  N            +             
Sbjct: 189 RLIIEND----EYLVQKSSVYKGDTVRVLPEVNNGRL---------DFGHFYCTTD---- 231

Query: 282 EVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  G H   N+   L    SI   + D       +     G   R   A       
Sbjct: 232 --KFPLKGEHNLLNLSFALLAADSIAGLEGD----VTYLTENLIGLEHRCEFAAEINGVE 285

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S   A+  L +         + +LG   + G  +      L +V++   
Sbjct: 286 YINDSKGTNIHSTLTALKGLPEG-------IVIILGGKDKNGNFAA-----LKDVINEKC 333

Query: 401 ISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDG-DVVV 448
              V   G     +   L   I V  + +E ++            G  VV+
Sbjct: 334 AG-VITYGQAGEKIYSTLKDIISVPLYKAEGLESAVRKGAEVAEAGQKVVL 383


>gi|209525298|ref|ZP_03273840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrospira maxima
           CS-328]
 gi|209494313|gb|EDZ94626.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrospira maxima
           CS-328]
          Length = 454

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 125/387 (32%), Gaps = 53/387 (13%)

Query: 80  SLSIPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--- 134
              +P       LG   + ++ +A R       + ITG+ GKTTT  ++           
Sbjct: 74  PWDLPALETARSLGIETIGEMELAWRNLQDIPWVGITGTNGKTTTTALIAKIFEVAGSAA 133

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                IG+    + +          +D+ I E+    +      +  + P I + TT  P
Sbjct: 134 PACGNIGNAVCELALQQQQNSSTP-LDWVIAEISSFQI----ESSSTLAPQIGIWTTFTP 188

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS----- 249
            HL+    ++     KA +   +E++     N DD++      +     + T  +     
Sbjct: 189 DHLNRHYTLDNYFRIKARL---MERSQVQVFNGDDAYLRRAAPELWPQAVWTSVNGAEEL 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G  +   +    W   +  +   V             +G H  QN+LM +    I   D
Sbjct: 246 LGDRQRGVYIQENWVYQNGCAIAPVD--------SLKMVGDHNRQNLLMAVAAARIAGID 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +    A+S F        R            I++S   N  + +  ++ +       E 
Sbjct: 298 KEAIAHAISTFPGVP---HRLEEVNTWMGIRWINDSKATNYDAAQVGLAAV-------EP 347

Query: 370 RRIAVLGDMCEMGELSQ---SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHV 424
             I + G   + G+ +    + H   A VL         L G         L  +   +V
Sbjct: 348 PVILIAGGEAKAGDDTHWINTIHQKAAAVL---------LIGTAAPTFAQRLQETDYHNV 398

Query: 425 HYSETMDGLF---LFIQSSLVDGDVVV 448
              ET++        + S      V++
Sbjct: 399 EIVETLENAIPRAAELASVFQAKAVLL 425


>gi|255320724|ref|ZP_05361901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262380645|ref|ZP_06073798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
 gi|255302340|gb|EET81580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262297593|gb|EEY85509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
          Length = 454

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   +    D    +  +S P F  D VL                 ++ + G+
Sbjct: 67  VGNAMKRGIDAIEYMLDA--GLPYISGPQFLADHVLQ-------------GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +  + +       + + E          
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSQSARLGGGKYFVVEADEYDSAFFD 168

Query: 177 FLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P  A++  +   H   F  +  I      +   +  TG I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSTGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +           +   G   +   +L      ++ S  +V  QGK + EV     G H  
Sbjct: 229 VLEMG---CWTPVIRTGLDTDTQAELYAELIQADGSHFKVLEQGKVIAEVQWSMTGQHSV 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L T+     +   +  A +ALS F   +   +R           + D+ +  +P ++
Sbjct: 286 ANALATIAAAQHVGVSIVQACEALSSFGGVK---RRMELLGTLRGIEVYDD-FAHHPTAI 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGFHV 411
           +  +         GE R  AV+    E    +     H D     S      V       
Sbjct: 342 ETTLD--GARKRLGERRLWAVI----EPRSNTMRMGSHKD-GLAHSARLADEVIWYQPEG 394

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  + +A P    V  S ++D +   I     +GD VV+  SN 
Sbjct: 395 LDWDLQPVVEAAPNKSQV--SRSLDEIIQRIVQEAGEGDAVVIM-SNG 439


>gi|203284490|ref|YP_002222230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
 gi|201083933|gb|ACH93524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
          Length = 451

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 132/342 (38%), Gaps = 31/342 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L +        G+       PL        +   I EL 
Sbjct: 112 PIIAITGTKGKSTLASLLYRVLVASYPNVKLGGNIGIS---PLNFLDELDGISPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L +I+ L+    P I++IT +   H + +S  ++    KA+IF     +G + +  D
Sbjct: 169 SWQLHDIKSLS----PMISIITNVYCDHQNYYSNFDDYIEDKAKIFINQN-SGILIV-QD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            ++        H L    I  F +    DF+        +    +V L    +  V +  
Sbjct: 223 QAYCNYFSRFKHNL---KIVLFSEIMPVDFK-EDIFYFKDG---KVYLNDGEI-GVLNES 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +  + ++T+ + + L  +++ + + +S+F   +G   R             +++ + 
Sbjct: 275 KIVLLISKMITVFVANYLHLNLNISSEIVSIF---DGIEHRLEFVKEFNGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   +I  L        G  I ++      G   +  + ++ + +  +  + + L G
Sbjct: 332 IPDSTVFSIKSLK-----VHGESIHLI-----TGGTDKELNFEIFDDILSFVKTWILLQG 381

Query: 409 FHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + + + L  R+++     ++     + +   +  D+V+ 
Sbjct: 382 SATVKIIEFLKSRNVNYFIFSSLKECVCYAKEVAMINDIVLF 423


>gi|281412291|ref|YP_003346370.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373394|gb|ADA66956.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
          Length = 430

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 109/345 (31%), Gaps = 49/345 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS         G++         +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSERGFKSFLGGNFGTP-----AVEALEGEYDYYVLE 155

Query: 167 LGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   E  +L++ +      +  I+  HL   S  EE   +K +      +     
Sbjct: 156 MSSFQLFWSERPYLSNFL------VLNISEDHLDWHSSFEEYVDSKLKPAFLQTEGDLFV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N      E L+        K  +  G++                +  E+ + GK     
Sbjct: 210 YN---KHIERLRNLEGVRSRKIPFWTGEN--------------FATERELIVHGKKYT-- 250

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +  Q     L +  +     +     L +    +    R             ++
Sbjct: 251 --LPGNYPYQTRENILAVSILYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYND 308

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S      S  A +  LS        + + +   MC +G+  +  +    E  S   + H+
Sbjct: 309 SKA---TSTHAVLGALSNFD-----KVVLI---MCGIGK--KENYSLFVEKASP-KLKHL 354

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     L   + +  H    E M+  F         GDV+++
Sbjct: 355 IMFGEISKELAPFVGKIPHSI-VENMEEAFEKAMEVSEKGDVILL 398


>gi|229818496|ref|ZP_04448777.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
 gi|229784144|gb|EEP20258.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 124/384 (32%), Gaps = 49/384 (12%)

Query: 24  QGFVNGISIDSRSIAPQE-AFF--AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              +  I+ D+R ++     F     K    DG D       KG    V   D      +
Sbjct: 58  NTPIPTITYDTRKVSQGTMLFVKGRFKPEFLDGID------TKGLYAYVAEEDHSDRTHA 111

Query: 81  LSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TY 137
           + +    V+DV  A++ L+       + + T++ ITG+ GKTTT  +    L+   +   
Sbjct: 112 IGV---IVNDVHKAMSLLSASFYGLPQHELTVVGITGTKGKTTTAFLAQAILNEYSQGRC 168

Query: 138 ACIGSYNNHIGVPLTL------------ARMPVDV-----DFGIFELGMSHLGEIRFLTH 180
           A   S N  +     L             RM          + + E+        R   +
Sbjct: 169 ALFSSVNLCLDGHTMLPSKLTTPESLDSFRMMRQAVDNGMKYLVMEVSSQAYKVNR--VY 226

Query: 181 LVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +   +A    I+P H+S      +E+    K +I      + T+ L  +     LL+  
Sbjct: 227 GLTFDVAAFLNISPDHISPIEHPTLEDYLYCKRQIIAN---SRTLVLGSECRHIGLLRED 283

Query: 239 SHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM 292
           +    +  +  FG         AD Q   W          ++L G  + E      G   
Sbjct: 284 AAVHQV-PVSEFGVLDAMPRDGADDQTCAWPADGTHRAYRMRLDGNDLGEFSLDLDGDFN 342

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  + I        D             GR  +YR   ++   T+    Y  N  S
Sbjct: 343 YKNALAAIAIAHAAGVPADCEALRALEHTKVPGRMMQYR---DERTSTIAIVDYAHNYDS 399

Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376
           +   +  +S        R   V G
Sbjct: 400 VVKLLDYVSTRYGERNPRITLVAG 423


>gi|297559871|ref|YP_003678845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844319|gb|ADH66339.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 483

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 123/370 (33%), Gaps = 39/370 (10%)

Query: 95  LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +  + +A RL+    + +A+TG+ GKTTT  ML   L +  +    +G+    +   +  
Sbjct: 110 IGDVELAWRLKPADQVWLAVTGTNGKTTTVRMLEAMLRADGRDALAVGNVGTPVVEAVQP 169

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  +    EL    L      +  +RPH A +  IAP HL    G++  A AK  I
Sbjct: 170 DAGGRFREVLAVELSSFQL----HWSSSLRPHAATVLNIAPDHLDWHGGLDPYARAKGRI 225

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWM 272
           +          +N  D++   L  +        + +     +  +  + +          
Sbjct: 226 YA---PGTLRVVNTADAWSVRLAEEDGDPHTPLVGFRLDTPRAGEVGVVEDLLVDRAFVE 282

Query: 273 EVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +     + +  +        H   N L    +   +     +    L+ F P+     R 
Sbjct: 283 DPHSSAEELATLSDVRPAAPHNVANALAAAALARSVGVYPGSVRAGLAAFDPEP---HRI 339

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                 G    +D+S   NP +  A++     +                  G L  +   
Sbjct: 340 AFVATAGGVDYVDDSKATNPHAAAASLGSYPSVVWIAG-------------GLLKGAEVD 386

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSE--------TMDGLFLFIQS 439
           DLA + +   +    L G     L++AL      + V   E         MD +     S
Sbjct: 387 DLAAMAADR-LRAAVLIGADRARLREALAEHAPGVPVVEVEGPADGDGTVMDAVVAAAAS 445

Query: 440 SLVDGDVVVV 449
              +GD V++
Sbjct: 446 LAEEGDTVLL 455


>gi|170760804|ref|YP_001785449.1| cyanophycin synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407793|gb|ACA56204.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A3
           str. Loch Maree]
          Length = 873

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 139/384 (36%), Gaps = 58/384 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +VD  + EL     G IR         + +IT +   H  L     +E++A  KA
Sbjct: 536 LT-NKEVDVAVLELA--RGGLIRSGLPYDLADVGIITNVTEDHLGLGGIDTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQC 266
            + E ++K G + +N DD     +  +  +     I  F K+KN          +     
Sbjct: 593 LVGEAVKKDGYVVINADDEASINIINRMKS----KIILFTKNKNNPIIPQYLDNKNLVLY 648

Query: 267 SEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L 
Sbjct: 649 LDGDTIYLKKINKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLE 708

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F  +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G  
Sbjct: 709 SFSNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP 763

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETMD 431
              G+ + S  + +  +    N  ++++       G     + D L + +    +  +  
Sbjct: 764 ---GDRTNSSTLKVGNICGE-NFDYIYIKEDKDKRGRMDGEIADLLKKGVLETGFKNSKL 819

Query: 432 GLFLFIQSSLV-------DGDVVV 448
            + L  + +L         GD+V+
Sbjct: 820 NIILDEEEALKKAIEFSNPGDLVI 843


>gi|294787087|ref|ZP_06752341.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315226740|ref|ZP_07868528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
 gi|294485920|gb|EFG33554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315120872|gb|EFT84004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
          Length = 510

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + ITG+ GKT+T EM +  L +       +G+    IGVP++ A       + + EL   
Sbjct: 115 VGITGTNGKTSTTEMTSEILQAAGYQAPAVGN----IGVPVSQAAQDPSNRYLVVELSSF 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L     L        A IT +A  HL    G E  A+ KA+++ G+ +   +  N DD 
Sbjct: 171 QLHYTDDLALA----GAAITNLADDHLDWHGGFENYAADKAKVYSGVSQ--VLVYNADDP 224

Query: 231 FFELLKAKSHALGIKTIYSFGKSK 254
                  ++          F    
Sbjct: 225 RVSAKAREARPAPGCRRVGFSLEA 248


>gi|187932746|ref|YP_001884683.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187720899|gb|ACD22120.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
          Length = 872

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 155/435 (35%), Gaps = 64/435 (14%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  G     H F    +++  G  ++N  M+      +IP+  V                
Sbjct: 444 AAPGIRM--HHFPSKGIERNVGKAIIN--MMYGENPKNIPIVSVT------GTNGKTTTT 493

Query: 105 RSKATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R    +++  G SVG T+T          I     CI   ++          +  DVD  
Sbjct: 494 RLINHVLSQMGYSVGMTST--------EGIYVNNKCIHKGDDSGFNSAKTILLNRDVDIA 545

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTG 221
           + E   +  G IR         ++VIT I   HL     + +EE++  KA + E +++ G
Sbjct: 546 VLE--TARGGLIRKGLAYDIADVSVITNITNDHLGLDGINSMEELSFVKALVGEAVKENG 603

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQ 277
              LN DD + + +  +  A  I     F K  + +   +         ++E    + + 
Sbjct: 604 FTILNADDEWSKTIINRIKANKI----FFSKYADNELIQKNIIDGGISVFIENDNIIVVN 659

Query: 278 G---------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                       + + ++G+  +  +N++   G +  +  D     K +  F+     G 
Sbjct: 660 NHKKYSICSINDVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMSFNLNNNNG- 718

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R+     +    ++D  Y  N    KA +S L +I    +   I V+G     G+     
Sbjct: 719 RFNIYEIEDRKIILD--YGHNIEGYKAVLSSLDKIKKDKD--LIGVIGIP---GDRCDDI 771

Query: 389 HIDLAEVLSLYNISHVWL----------SGFHVLALKDAL---PRSIHVHYS-ETMDGLF 434
            I++ E+ S   +  + +           G     LK+ +    ++  +H   + +  L 
Sbjct: 772 AIEIGEICSEM-LDKIIIKEDKDRRGRDEGEIASLLKNGVLRKNKNAKIHVCLDEIKALE 830

Query: 435 LFIQSSLVDGDVVVV 449
             +      GD +VV
Sbjct: 831 KALM-ISKKGDTIVV 844


>gi|77461208|ref|YP_350715.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Pseudomonas
           fluorescens Pf0-1]
 gi|77385211|gb|ABA76724.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 449

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 122/368 (33%), Gaps = 35/368 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++       F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGGTPFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +   + +        ++T           +Q++  K   + S  EV  +G S  VV   
Sbjct: 222 TEPALQRVIEMGCWTPVQT-----TGAGGQWQVKLLK--DDGSAFEVMFEGVSQGVVEWE 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       I  LS F   +   +R          T+ D+ +
Sbjct: 275 LTGQHNVANALATLAAARHVGVVPSMGIAGLSAFKSVK---RRMEKVAEVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IA++    E    S     H D     S+ +   V
Sbjct: 331 AHHPTAIATTLDGLR--KRIGDAPLIAII----EPRSNSMKLGAHRD-GLPDSVVDADQV 383

Query: 405 WLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---- 457
                  L       A   ++    S++++G+   ++S    G  VV+  SN  GF    
Sbjct: 384 IWYAPANLGWDLAGTAALCTVPSIVSDSLEGIIERVKSQAQPGTHVVIM-SNG-GFGGLH 441

Query: 458 YRLINLLL 465
            +L   L 
Sbjct: 442 GKLAEALK 449


>gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase
           [Kitasatospora setae KM-6054]
          Length = 480

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 87/271 (32%), Gaps = 18/271 (6%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +PV+G  DV  A    A        A  +A+TG+ GKTTT +ML   L++  K  A +G+
Sbjct: 99  VPVWG--DVELAWRLRAPHPATGEPAPWLAVTGTNGKTTTVQMLASILTAAGKRTAAVGN 156

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               +   + LA  P DV     EL    L         +R H   +  +AP HL     
Sbjct: 157 VGVPVLDAV-LAEEPYDV--LAVELSSYQL----HWAPSLRVHSGAVLNLAPDHLDWHGS 209

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E  A+AK  I+EG         N  D   E L  ++          FG    +   L  
Sbjct: 210 MEAYAAAKGRIYEG--NQVACVYNLADPATEALVREADVEEGCRAVGFGLDAPSVSNLGV 267

Query: 263 WKQCSEQSWMEVQLQGKSME----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                            + E       +    H   N L    +      D       L 
Sbjct: 268 VDGLLVDRAFVADRANSAAELGAVADVNPPAPHNIANALAAAALARAYGVDAKAVRDGLR 327

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            F        R            +++S   N
Sbjct: 328 AFT---PDAHRIAHVAEIDGVAYVNDSKATN 355


>gi|313896106|ref|ZP_07829660.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975531|gb|EFR40992.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 459

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 90/328 (27%), Gaps = 41/328 (12%)

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +        G+    +       R+P +      E+    +      T     HIA   
Sbjct: 137 RAHFPAVGVGGNIGVPLIDEA--LRIPAEGAIAA-EISSYQM----EATQYFHVHIAAEL 189

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + P H+     +E   + K ++F        + LN DD     + A++           
Sbjct: 190 NVTPDHIVRHGSMEVYQAMKEKLFAWQTPDDFLVLNDDDPHTRGMAARAKGRVCLFSRRH 249

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSIL 306
             ++ A           +   + +   G   E+V        G H  +N L       + 
Sbjct: 250 ALAEGAYI---------DGGMIVIVWDGVRHELVPIAELGIRGGHNVENALAAAASAFLA 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L  F   E    R       G     ++S   N  +   A+         
Sbjct: 301 GVTPEEMRPVLRSFRGVE---HRIEPVREIGGVPYYNDSKATNTDAAIKALEAF------ 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI 422
            +G  + + G   +M +L+          L       + L G        A  DA     
Sbjct: 352 -DGHIVLIAGGDDKMTDLTDFMR------LVRERTDELILVGAAAERFAAAAADAGIAPA 404

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
           H+H     M+       +       V++
Sbjct: 405 HIHRVGYDMEAAVHLAHTLARPPQTVLL 432


>gi|312891360|ref|ZP_07750877.1| Mur ligase middle domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311296054|gb|EFQ73206.1| Mur ligase middle domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 455

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 130/391 (33%), Gaps = 43/391 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +      +       + I GS GKTT   M+   L    K +  +      +    
Sbjct: 87  LKIYSYPEYIYQQSKDKLRVVIGGSHGKTTITSMILHVLQCAGKDFDYL--VGAQLAGFD 144

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+ ++  D    + E        I      HL + +IAV++ IA  H++ F   E+    
Sbjct: 145 TMVKLTNDAPIMVIEGDEYLASPIDRRPKFHLYQANIAVLSGIAWDHINVFPTFEDYTRQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   + ++  G +                H L      S    K   + L  ++     
Sbjct: 205 FSLFLDTIQPGGAVIY----------SETDHVLNDVVSQSSSDIKKIPYHLPAYEIIDGV 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +++         +      G H   N      I   L  + +T  + ++ F    G  +R
Sbjct: 255 TYIIYD----EQKYALKVFGEHNLLNTEAARLICHELGINAETFYQYITTFQ---GAARR 307

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---Q 386
                  G   +  + +  +P+ + A I+ +    P  + + IAV+    E+   S   +
Sbjct: 308 LELLAQTGTGNIYKD-FAHSPSKLTATINAVKTQFP--DRKLIAVM----ELHTFSSLNK 360

Query: 387 SFHIDLAEVLSLYNISHVWL---------SGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           +F  + A  +   + + V++            + + +  A      +        L  ++
Sbjct: 361 NFLSEYAGTMDPADEAVVFIDEKTFKQKNIEPYSIEILKAAFAKNDLIIFNQPQLLAKYL 420

Query: 438 QSSLVDGDVVVVKSSNSCG---FYRLINLLL 465
           ++  +    V++ SS + G      L   +L
Sbjct: 421 ENISLRNTNVLLMSSGNFGGLNLAELTEKIL 451


>gi|89099774|ref|ZP_01172647.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
 gi|89085521|gb|EAR64649.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
          Length = 695

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 132/387 (34%), Gaps = 53/387 (13%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLT 152
           R  +   +IA+TG+ GKTTT  ++   +     T     S   ++            P++
Sbjct: 297 REEAAIPVIAVTGTNGKTTTSRLVKHFIEKEGTTVGLTSSDGVYVGEQCIDTGDCSGPIS 356

Query: 153 LARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIAS 208
             ++     VD  + E   +  G +R         I ++T ++  H  L       ++  
Sbjct: 357 ARKILSHPKVDIAVLE--SARGGILREGLAFRHCDIGIVTNVSEDHLGLDGIEDFAQLVK 414

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-----W 263
            K  I E + + G   LN DD   E LK  S+  G     S  +      +  +     W
Sbjct: 415 LKRLIPEVVIEGGYCILNADDP--ETLKMASYTKGKVIYTSLNEESEGSQRALEKGEPLW 472

Query: 264 KQCSEQSWMEVQ-------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
              S    +  +       L    + V  +G   H   N+L  L   +     ++T  + 
Sbjct: 473 YLDSMGQIVYAEAGIKAEFLPAADVPVTINGRAKHNIANLLQALAAAAAQGVSLETLKEK 532

Query: 317 LSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
              F P     + R+   L QG   +ID  Y  N A + A   V    +     R I +L
Sbjct: 533 ALSFTPDSRNSRGRFNAFLVQGREIIID--YAHNAAGLSA---VFGTAADTKNKRLITIL 587

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIHV----- 424
                 G+ S S    +AE+ + Y+   + +       G   L     L  +        
Sbjct: 588 SAP---GDRSDSDIARMAEISAGYS-DLIIIKEDKDLRGRLPLETASLLKAAASTVIDSQ 643

Query: 425 HYSETMDGLFLFIQ--SSLVDGDVVVV 449
                 D L  + +  S   +GD ++ 
Sbjct: 644 SVFVHPDELEAYQKAWSLSQEGDTLLF 670


>gi|170719003|ref|YP_001784164.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
 gi|168827132|gb|ACA32503.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
          Length = 458

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 144/415 (34%), Gaps = 44/415 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     + +        +   L     ++A++G+ GKTTT  ML+ 
Sbjct: 67  LVVIGNAMKRGNPCVEYVLENSLPYRSGPQWLHEHLLRDRWVLAVSGTHGKTTTTGMLSW 126

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + GV   L + P    F + E            +  V   P 
Sbjct: 127 ILEQNGLQPGFLIGGIAGNFGVSARLGKSP----FFVIEADEYDTAFFDKRSKFVHYNPK 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  +   H   F  ++ I      +   + K+G             + A +H   +K
Sbjct: 183 TLIINNLGFDHADIFDNLQAIQRQFHHMIRTMPKSG------------RILAFAHEQSVK 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-----SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
                G      F  +  +  +E+     S   V  QGK   EV  + +G H   N LM 
Sbjct: 231 ETLDMGCWSEMHFLGQDQEWHTERIAHDSSHFAVYHQGKKAGEVQWNIVGQHNMNNALMA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +   V  A +AL  F   +   +R          T+ D+ +  +PA + A ++ 
Sbjct: 291 IAAAYHVGVQVKDACQALYSFVNAK---RRLEVKGEVNGVTVYDD-FAHHPAEILATLTA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVL-SLYNISHVWLSGFHVLA--L 414
           L      G  R +AVL    E    +     H D  E+  +L    +V+L     +   +
Sbjct: 347 LRD-KVGGGARILAVL----EPRSNTMKMGIHKD--EIAPALARADYVFLLQPENIPWNV 399

Query: 415 KDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +     +    +S  +D L   I +     D ++V  SN   F  +   LLE+ 
Sbjct: 400 VEIANDCVQPAKWSGNLDNLVDLIVTEAQPEDHILVM-SNGS-FGGIHQKLLEKL 452


>gi|119953370|ref|YP_945579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
 gi|119862141|gb|AAX17909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
          Length = 451

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 125/353 (35%), Gaps = 32/353 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L          G+       PL+       V   I EL 
Sbjct: 112 PIIAITGTKGKSTLASLLHKVLVIKYPNSKLGGNIGVS---PLSFLDELDGVSPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L ++R L     P I++IT I   H + +S  +     K+ IF        I ++ D
Sbjct: 169 SWQLHDLRNLC----PIISIITNIYSDHQNYYSNFDSYIEDKSRIFINQNSG--ILISQD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +++      S          F ++   +F+   +     + ++  ++ G   E     +
Sbjct: 223 QAYYNYF---SRFKSKLKSILFSEAVPLNFENDVFYFKKGKIYLNNKVVGTLSESRIVLL 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              M      T+ I S L  D+    K ++ F   +G   R             +++ + 
Sbjct: 280 ISKMI-----TIFIASYLGLDLSVVSKIVTDF---DGIEHRLEFVREFEGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   ++  L             + G     G   +       E+LS+   + + L G
Sbjct: 332 IPDSTILSVKSLRAYGGLIN----LITG-----GTDKELDFAIFGEILSIVK-TWILLKG 381

Query: 409 FHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
              L +   L   +I+     +++    + +   V  D+V+   +S S   ++
Sbjct: 382 SATLKIIKFLEDNNINYFIFSSLEECVCYAKKISVQNDIVLFSPASASFELFK 434


>gi|113461392|ref|YP_719461.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
 gi|112823435|gb|ABI25524.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
          Length = 458

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 144/415 (34%), Gaps = 44/415 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V        G+  +     + +        +   L     ++A++G+ GKTTT  ML+ 
Sbjct: 67  LVVIGNAMKRGNPCVEYVLENSLPYRSGPQWLHEHLLRDRWVLAVSGTHGKTTTTGMLSW 126

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + GV   L + P    F + E            +  V   P 
Sbjct: 127 ILEQNGLQPGFLIGGIAGNFGVSARLGKSP----FFVIEADEYDTAFFDKRSKFVHYNPK 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  +   H   F  ++ I      +   + K+G             + A +H   +K
Sbjct: 183 TLIINNLGFDHADIFDNLQAIQRQFHHMIRTMPKSG------------RILAFAHEQSVK 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-----SWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
                G      F  +  +  +E+     S   V  QGK   EV  + +G H   N LM 
Sbjct: 231 ETLDMGCWSEMHFLGQDQEWHTERIAHDSSHFAVYHQGKKAGEVQWNIVGQHNMNNALMA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +   V  A +AL  F   +   +R          T+ D+ +  +PA + A ++ 
Sbjct: 291 IAAAYHVGVQVKDACQALYSFVNAK---RRLEVKGEVNGVTVYDD-FAHHPAEILATLTA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVL-SLYNISHVWLSGFHVLA--L 414
           L      G  R +AVL    E    +     H D  E+  +L    +V+L     +   +
Sbjct: 347 LRD-KVGGGARILAVL----EPRSNTMKMGIHKD--EIAPALARADYVFLLQPENIPWNV 399

Query: 415 KDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +     +    +S  +D L   I +     D ++V  SN   F  +   LLE+ 
Sbjct: 400 VEIANDCVQPAKWSGNLDNLVDLIVTEAQPEDHILVM-SNGS-FGGIHQKLLEKL 452


>gi|156741086|ref|YP_001431215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|189082915|sp|A7NI97|MURD_ROSCS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156232414|gb|ABU57197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 472

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 105/371 (28%), Gaps = 35/371 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A+              I+ +TG+ GKTTT  +L   L          G+        L 
Sbjct: 95  AAIEMEMTLFFRLCPGPILGVTGTKGKTTTTLLLGAMLREQFPDTVVAGNLRIS---ALD 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                      + EL    L  +      + P IA ITTIAP HL     +E    AK E
Sbjct: 152 QLPSISATTPVVLELSSFVLEGLGE--AGLSPKIACITTIAPDHLDRHGTMEAYIQAKEE 209

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGI---------KTIYSFGKSKNADFQLRKW 263
           I+        + L  D      +       G            +Y     + A ++  + 
Sbjct: 210 IWRHQRPGDPVVLCADSPIMRAMAVVDRRPGDMVWFAGAKGSDVYRLKGDRRAFWRGDEL 269

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   +              G H   N+              +   +A+  F   
Sbjct: 270 IWHDRSTEGSITHTVICTRDDVRLPGAHNLANIAAATAAACAFGIAPEHIRRAVRAFAGV 329

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R            I+++    P +  AA+              + + G     G 
Sbjct: 330 E---HRLEFVRELDGVCYINDTAATAPEAAIAALRTFDA-------PIVLIAG-----GA 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQ 438
                    A  ++    + + L G     L DAL       +IH  Y +  +      +
Sbjct: 375 DKNLPFDAFAREIAQRASAVILLQGSATPKLLDALRAARASVAIHGPY-DDFEQALDTAR 433

Query: 439 SSLVDGDVVVV 449
                G++V++
Sbjct: 434 RIAAPGEIVLL 444


>gi|309812642|ref|ZP_07706386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
 gi|308433337|gb|EFP57225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
          Length = 501

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 114/372 (30%), Gaps = 44/372 (11%)

Query: 96  NKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            ++ +A R+R +   A  + ITG+ GKTT   ML   L +        G+    + +   
Sbjct: 124 GEVELAWRMRPREGGAPWLTITGTNGKTTAVTMLESMLKAQGLRAVAAGNVGMPL-LEAV 182

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L   P DV     EL    L      +  V P+ +    +AP H+      EE    K  
Sbjct: 183 LHPQPYDVI--AVELSSFQL----HWSRTVSPYASCCLNVAPDHIDWHGSYEEYKRQKGR 236

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           ++E  +       N DD   E +   +  +       F         +            
Sbjct: 237 VYERTQV--ACVYNVDDPATEAMVEDAEVVDGCRAIGFTLGTPGPSMVGIVDDVLADRAF 294

Query: 273 EVQLQGKSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             + +  + E+        +    H   + L    +       +    + L  + P+   
Sbjct: 295 IAERRTSAAELAILSDLGPNASAPHYVADALAAAALARSYGVTLAAVRQGLVDYTPQP-- 352

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R       G    +D+S   NP + +A++     +                  G L  
Sbjct: 353 -HRMASVAEVGGVRWVDDSKATNPPAAQASLQAFDPVVWIAG-------------GLLKG 398

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMD------GLFLFI 437
           +   DL    +   +    L G     + DAL      + V   ET D            
Sbjct: 399 AEVDDLVR-ANASRLRAAVLLGRDRGIIADALAAHAPQVPVTVIETSDADEAMREAVAAA 457

Query: 438 QSSLVDGDVVVV 449
            ++   GD V++
Sbjct: 458 NAAAQRGDTVLL 469


>gi|261495549|ref|ZP_05991995.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308656|gb|EEY09913.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 454

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 130/399 (32%), Gaps = 37/399 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V      S G+  +     + +        +   L     ++A++G+ GKTTT  ML  
Sbjct: 66  LVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLLKDKWVLAVSGTHGKTTTTGMLAW 125

Query: 129 ALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PH 185
            L          IG    + G+       P    F + E            +  V   P 
Sbjct: 126 ILDQNGIDTGFLIGGVAGNFGISARAGNSP----FFVIEADEYDSAFFDKRSKFVHYTPK 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  +   H   F  ++ I      +   + ++G I     D   +          ++
Sbjct: 182 TLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGCILSAIADQNVQDTLKMGSYSQLQ 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            I      +  ++  +     ++ S  EV  L  K  EV    IG H   N LM +    
Sbjct: 242 FI-----GEQNEWFAK--PLNADCSQFEVFHLGVKQGEVHWSIIGKHNMHNALMAIAAAH 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +V  A +AL  F       +R          T+ D+ +  +P +++A I  L    
Sbjct: 295 HAGVEVQGACEALGKFVNAN---RRLEVKGEVNGITVYDD-FAHHPTAIEATIDALRG-K 349

Query: 365 PHGEGRRIAVLG------DMC-EMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKD 416
                R +AVL        M     E++ S H   AE + +Y    + W        L  
Sbjct: 350 VGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHD--AEAVFVYQPDIIAWSVSEITNVLSQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                   ++S  +D L   +       + ++V  SN  
Sbjct: 408 ------PAYWSANIDDLVDLVVKEAKPTEHILVM-SNGA 439


>gi|254516598|ref|ZP_05128657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR5-3]
 gi|219675021|gb|EED31388.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR5-3]
          Length = 444

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 120/371 (32%), Gaps = 34/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A++G+ GKTT   ML   L     +    IG    + GV   L        F + E  
Sbjct: 92  VLAVSGTHGKTTASSMLAWLLEDAGLSPGFLIGGVPLNFGVSARLGSGS----FFVIEAD 147

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                        V  RP   ++  +   H   +  +  I      +   +   G +F  
Sbjct: 148 EYDTAFFDKRAKFVHYRPRTLIVNNLEFDHADIYPDLAAIQRQFHHLLRCVPGNGRVFTP 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E +         +T+ +  +   AD+        +  +  ++   G     V  
Sbjct: 208 RAVPAVEEMLELGCWTPRETLST--EDSQADWYA--LLADTGGTHWQLNAPGGETLAVSW 263

Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           G  G H   N L        +      A+ A        G  +R           + D+ 
Sbjct: 264 GQRGAHNVANALGACAAARHVGVTPKHAVNA---LQGFLGVRRRLELRGEVSNIRVYDD- 319

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++K+ ++ L   +     R +AV+        MGE   +         S     
Sbjct: 320 FAHHPTAIKSTLAALQGAAGRK--RVLAVIEPRSNTMRMGEHRSAL------APSTAAAD 371

Query: 403 HVWLSGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS-NSCG 456
            V+      L  +L+D +   ++    SE +D L   I    + GD VVV    +     
Sbjct: 372 EVFWYQPKALGWSLEDVIDSSAVPASISEDIDALVARIVDHALPGDDVVVMSNGAFGGIH 431

Query: 457 FYRLINLLLEE 467
             RL++ L + 
Sbjct: 432 -ERLLSALAKR 441


>gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Salmonella enterica subsp. enterica serovar Typhi str.
          J185]
          Length = 90

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 6  TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
          T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5  TLSKIADVLGAEHRGA--DLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGA 62

Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          G ++V+  +      + +P   V D   A  +L
Sbjct: 63 GALLVSRPL-----DIDLPQVIVKDTRQAFGQL 90


>gi|86132660|ref|ZP_01051253.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816902|gb|EAQ38087.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 450

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 124/376 (32%), Gaps = 39/376 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    T + I GS GKTT   M+   +    K    +      +    T+ RM  D
Sbjct: 95  YLYERAKDKTRVVIGGSHGKTTITSMILHVMHYWDKEVDYM--VGAQLEGFDTMVRMTDD 152

Query: 160 VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            DF + E        I      HL +P+IA+++ IA  H++ F   +          + +
Sbjct: 153 ADFMVLEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFDNYVEQFQIFVDSM 212

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G +  N +D     +   + A   K  Y +   +             E     ++  
Sbjct: 213 TNGGAMVYNTEDENVVKVVENATAHIKK--YPYQTPE----------YTVEDGETLLETP 260

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +M       G H   N+     I   +    +   +A+S F    G  KR    + Q 
Sbjct: 261 DGAMP--IEVFGKHNLNNLAGAKWICQHMGVVEEDFYEAISTFT---GASKRLEL-IAQS 314

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+I + +  +P+ + A     S +      R +    ++     L+  F  +    L 
Sbjct: 315 NDTVIYKDFAHSPSKVAA---TTSAVKEQYGDRTVVACLELHTYSSLNPEFLSEYQGALD 371

Query: 398 LYNISHVW----------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +++ V+          L       +  A  R     +++  D    F+    +    +
Sbjct: 372 AADVAVVFYSPKAVEIKKLEPITAQQIAAAFKRDDLTIFTDPAD-FKAFLFEQELKNKAI 430

Query: 448 VVKSSNSCG---FYRL 460
           ++ SS + G   F  +
Sbjct: 431 LLMSSGNYGGLDFEEV 446


>gi|320531620|ref|ZP_08032562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320136149|gb|EFW28155.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 519

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 112/353 (31%), Gaps = 39/353 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
             DSR  +       +      DG           A L+VV+  + A+      PV    
Sbjct: 56  VFDSRESSIDTLETPVVSATVADGETTAAALADSPARLLVVSPGVPATG-----PVLRSA 110

Query: 90  DVLG-------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  G        L               + +TG+ GKTTT  ML+  L++   T   +G+
Sbjct: 111 EAAGIETWSEVELAWRIQQDSSHPDVPWLTLTGTDGKTTTVSMLSTILAAQGLTAPAVGN 170

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
               IG P+  A +    D    EL    L      T  + P  +    +A  HL    G
Sbjct: 171 ----IGTPVIEAVLSGSADALAVELSSFQL----HTTRTLAPLASTCLNLAADHLDWHGG 222

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E  A  KA ++ G         N  D+  E +  ++  +       F  +     Q+  
Sbjct: 223 LEAYARDKARVYSGTRL--AAVYNLADAATEDMVRQADVVQGCRAVGFTLAAPGLGQVGM 280

Query: 263 WKQCSEQSWMEVQLQ------GKSMEVVHHGIGYHM-------AQNMLMTLGIVSILTAD 309
            +          Q +        + ++VH   G            + L    +     AD
Sbjct: 281 VEDLLVDRAFHAQRRSSGVELATTADLVHLAPGRCAQNLPAHLLADALAAAALACAAGAD 340

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +      +          R          T +D+S   NP S +AA++ L Q
Sbjct: 341 PEAV---TAGLRAYSPGAHRIVTVAEAEGITWVDDSKATNPHSAEAALTSLPQ 390


>gi|311742800|ref|ZP_07716609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
 gi|311314428|gb|EFQ84336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
          Length = 495

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 122/404 (30%), Gaps = 44/404 (10%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           G     +         S  I V      L   +++ +A RLR +  A  + +TG+ GKTT
Sbjct: 91  GPSAPTLVVTSPGWSPSTPILVEAAGRGLPVWSEVELAWRLRGEDAAPWLGVTGTNGKTT 150

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T +ML   L +     A +G+    +   +     P   D    EL    L      +  
Sbjct: 151 TVQMLDAILRADGLRSAAVGNVGRPVLEAVM---DPEPYDVLAVELSSYQL----HWSSS 203

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    + +  +AP HL         A+AK  I++          N  D   E L   +  
Sbjct: 204 LSCRASTVLNVAPDHLDWHGSHVAYAAAKGRIYQH--AQVACVYNVQDPATEQLVVDAEV 261

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--------GIGYHMA 293
           +       F         +   +         V  Q  + E+               H+ 
Sbjct: 262 VEGCRAIGFTLGLPGPGMIGLVEDVMADRAFVVDRQSNAAELGTLADLATPAGPAAPHVV 321

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            + L    +              L  F        R            +D+S   NPA+ 
Sbjct: 322 ADALAAAALARAHGVSQRAVRDGLRGFS---PDAHRIADVATIDAIRYVDDSKATNPAAA 378

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            A++     +     G                 +F   +    +  ++  V L G     
Sbjct: 379 LASLRSFDHVVWIAGGL------------AKGATFDDLVG--TAREHLRGVVLIGTDRDV 424

Query: 414 LKDALPRS------IHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           ++DAL R       I V   ET  MD +     S    GDVV++
Sbjct: 425 VRDALRRHAPEVPVIEVLNGETDLMDRVVDAATSLARSGDVVLL 468


>gi|260061880|ref|YP_003194960.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Robiginitalea biformata HTCC2501]
 gi|88786013|gb|EAR17182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Robiginitalea biformata HTCC2501]
          Length = 451

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 119/363 (32%), Gaps = 41/363 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                  T + I GS GKTT   M+   LS   K    +      +     +  +  + +
Sbjct: 97  YEQARDKTRVVIGGSHGKTTITSMILHVLSYWDKPADYM--VGAQLDGFDRMVHLTGENE 154

Query: 162 FGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F + E        I      HL +P+IA+++ IA  H++ F   E          EG+  
Sbjct: 155 FMVLEGDEYLSSAIDRRPKFHLYQPNIALLSGIAWDHINVFPTFENYLEQFRIFLEGIVP 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G+I  N +D   + L     A   K  Y        D+++R      +        +G 
Sbjct: 215 GGSITYNTEDPEVKALVEGLQAPIRKFPY-----ATPDYEIRDGVTYLD------TPEGM 263

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +     G H   NM     I   +  D     +A++ F   +G  +R          
Sbjct: 264 ---MPLKVFGRHNLNNMAGAQWICQQMGVDATEFYEAMATF---KGAARRLELLAGNDAG 317

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-- 397
            L  + +  +P+  +A    + +  P    + +A L    E+   S S + D        
Sbjct: 318 YLFKD-FAHSPSKAQATTRAVREQYP--GKKLVACL----ELHTYS-SLNADFLSDYRGS 369

Query: 398 -LYNISHVWLSGFHVLALK-------DALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
                  +       L +K       + + R+ ++ + E  T           L   D V
Sbjct: 370 LDAADRALVFYTPEALKIKGLEEISPEDIQRAFNLQHLEVYTETAALREALEDLEVSDTV 429

Query: 448 VVK 450
           ++ 
Sbjct: 430 LLM 432


>gi|19553360|ref|NP_601362.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62390999|ref|YP_226401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326338|emb|CAF20500.1| UDP-N-ACETYLMURAMOYLALANINE D-GLUTAMATE LIGASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 472

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 117/361 (32%), Gaps = 37/361 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L  A       T +A+TG+ GKTTT  ML   ++    T   +G+    +   L    
Sbjct: 106 WRLDQAGVFGEPHTWLAVTGTNGKTTTTSMLAAMMNEGGFTAKAVGNIGIPVSEALV--- 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               +D  + EL    L      +    P   V+  +A  H+     + + A AK E+  
Sbjct: 163 AKNRIDVLVAELSSFQL----HWSPTFTPDAGVVLNLAEDHIDWHGSMRDYALAKMEVL- 217

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSW 271
              K     +  DD +   L +++   G+     F  ++ A      +  +    +  + 
Sbjct: 218 ---KGKVAIIGADDPYLVQLTSEADLSGL---IGFTVNEPATGQLGVKAGELVDNAYGNN 271

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + +           +  G     + L    +        +   +AL  F   E  G R +
Sbjct: 272 VVLASADG-----INPAGPAGVLDALAAAAVARSQGVAPEAIARALDSF---EVAGHRGQ 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFH 389
                     ID S   NP +  +A++    +        I V+G   +  +++     H
Sbjct: 324 VVAEHDGVHFIDNSKATNPHAADSALAGHDSV--------IWVVGGQLKGADIAPLVKKH 375

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               +   +       +          A +  +      E M+ +     S    GD V+
Sbjct: 376 EQRIKAALVLGADRAEIVAALKEHASQASVFVTDKTEPFEAMEEIVTEAFSISEPGDTVL 435

Query: 449 V 449
           +
Sbjct: 436 L 436


>gi|126657548|ref|ZP_01728704.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
 gi|126621252|gb|EAZ91965.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
          Length = 872

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 128/383 (33%), Gaps = 53/383 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI----------GVPLTLAR 155
           S+  I+AITG+ GKTTT  +         K      +   +I            P + A 
Sbjct: 486 SRVPIVAITGTNGKTTTTRLTAHIYRQTGKVVGYTSTDGVYIGEYLVEKGDNTGPYSAAM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R         + ++  +A  HL   + + IE++A  K  +
Sbjct: 546 ILKDPTVEVAVLESARGGILRSGLAFDNCDVGIVLNVAADHLGLGDINTIEQMARVKGVV 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS------ 267
            E +   G   LN DD     +  +        +  F  + + +      ++        
Sbjct: 606 AEVVHADGYAVLNADDPLVTAMAEQVKG----KVAYFSMNPDNEVIQNHTRRDGMAAVYE 661

Query: 268 ------EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  +    ++++   ++ +  +G+   M  N L           D++   + +  F
Sbjct: 662 NGYISILEGQFTLRIEEAVNVPMTMNGMAPFMIANALAACLAAFCQGVDIEDIRQGVRTF 721

Query: 321 HPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                +   R        +  L+D  Y  NPA  +A      +   + +G+R+ V+G   
Sbjct: 722 KASANQTPGRMNLFNLGDYHALVD--YAHNPAGYEAV----GEFVKNWKGQRLGVVGGP- 774

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDA-LPRSIHVHYSE 428
             G+      + L ++ +      + +           G     + D  L  +    Y  
Sbjct: 775 --GDRRDEDLVLLGKIAAGV-FDRILVKEDDDKRGRDRGEAADLIIDGILSENDQADYQA 831

Query: 429 TMD--GLFLFIQSSLVDGDVVVV 449
            +D      +    +  G +VV+
Sbjct: 832 ILDETEAIEYGLDKVDKGGLVVI 854


>gi|168182271|ref|ZP_02616935.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
 gi|182674522|gb|EDT86483.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
          Length = 873

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 143/385 (37%), Gaps = 60/385 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G I+         + +IT +   H  L + + +E++A  KA
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQC 266
            + E ++K G + +N DD     +  +  +     I  F K+KN          +     
Sbjct: 593 LVGEAVKKDGYVVINADDEASINIINRMKS----KIILFTKNKNNPIIPQYLDNKNLVLY 648

Query: 267 SEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +   + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L 
Sbjct: 649 LDGDTIYLKKINKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLE 708

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F+ +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G  
Sbjct: 709 SFNNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP 763

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYS---- 427
              G+ + S  + +  +    N  ++++       G     + D L + I    +     
Sbjct: 764 ---GDRTNSSTLKVGNICGE-NFDYIYIKEDRDKRGRKDGEIVDLLKKGILETGFKNSKL 819

Query: 428 ----ETMDGLFLFIQSSLVDGDVVV 448
               +  + L   I+SS   GD+V+
Sbjct: 820 NIILDEEEALKKAIESS-NPGDLVI 843


>gi|168070758|ref|XP_001786928.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660149|gb|EDQ48258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 101/342 (29%), Gaps = 44/342 (12%)

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIA 187
            L +  +     G+    IG PL  A    D     + EL    L      T   RP + 
Sbjct: 1   MLEAAGRRPIVAGN----IGRPLCEAAEEADAGSVLVAELSSFQLKG----TSSFRPQVG 52

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL----LKAKSHALG 243
           ++  IA  HL     +++  ++KA++F    +  T  LN DD         LK++     
Sbjct: 53  LLLNIAETHLDYHGSMDDYVASKAKLFANQTEQDTAVLNADDPACAAIEAGLKSRLIPFS 112

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNM 296
           +      G      ++       + +    +  +                  G H A N 
Sbjct: 113 LYRRLESGVCIEPPYEAAGAPDNAGEPERTIVYRSGDGTEQAIVAVRELGVPGRHNAGNA 172

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +     +  +       L  F   E    R    L        ++S   NP +   +
Sbjct: 173 LAAVAACIAIGVEPALLAAPLRDFGGVE---HRLEFVLEAAGVRYYNDSKATNPVATLMS 229

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK- 415
                Q         I + G     G    S +++L  +     I  + L G     L  
Sbjct: 230 TGSFEQ-------PLILIAG-----GLDRGSDYMELLPLFGSPKIKGLVLLGETRGKLAR 277

Query: 416 -DALPRSIHVHYSETMDGLFLFIQSSLV-------DGDVVVV 449
              L    +V   +        I+ +          GD V++
Sbjct: 278 VAELAGMANVAVVDAEGDAESVIRQATKAAARLASPGDAVLL 319


>gi|88803507|ref|ZP_01119032.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Polaribacter
           irgensii 23-P]
 gi|88780519|gb|EAR11699.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Polaribacter
           irgensii 23-P]
          Length = 450

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 102/275 (37%), Gaps = 31/275 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                T + I GS GKTT   M+   L       A        +    T+  +  + DF 
Sbjct: 99  QSKNKTRVVIGGSHGKTTVTSMILHVL--KYHERAVDYMVGAQLEGFETMVHLTEENDFI 156

Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E     S   ++R   HL +P+IA+IT IA  H++ F   E          + +   G
Sbjct: 157 VLEGDEYLSSPIDMRPKFHLYKPNIALITGIAWDHINVFPNFENYTDQFKIFTDAMVPGG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQG 278
           ++  N +D+  + +   S                   Q++K+   +   ++E     L+ 
Sbjct: 217 SMVYNEEDAIVKEVVEASLN-----------------QIKKYPYQTPNHFIEDGITYLET 259

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++     G H  QN+     I   +  D D   +A++ F     R +     + +  
Sbjct: 260 VEGDLPLEIFGKHNLQNLAGAKWICQHMGIDEDDFYEAIANFKGASKRLE----KIAENK 315

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            T+I + +  +P+ + AA + + +       R I 
Sbjct: 316 STVIFKDFAHSPSKVLAATNAVKE---QYADRTIL 347


>gi|254495310|ref|ZP_05108234.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
 gi|85819664|gb|EAQ40821.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
          Length = 450

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 132/388 (34%), Gaps = 47/388 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKTT   M+   L+   +    +      +    
Sbjct: 87  LKIYSYPEFLYEQSKDKTRVVIGGSHGKTTITSMILHVLNYHDREVDYM--VGAQLDGFE 144

Query: 152 TLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  + DF + E     S   ++R   HL +P+IA+++ IA  H++ F   E     
Sbjct: 145 TMVHLTEENDFIVLEGDEYLSSPIDMRPKFHLYKPNIALLSGIAWDHINVFPTFENYKEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                + +   G++  N +D     +   S     K    +     + F           
Sbjct: 205 FKIFTDSMINGGSMVYNSEDENVAEIVESSENHIKK----YPYETPSHFIDNGITY---- 256

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                 L+ +  ++     G H  QN+     I   +  D D   +A++ F     R + 
Sbjct: 257 ------LETEEGDLPLEIFGKHNLQNLAGAKWICQHMGIDEDDFYEAIASFSGASKRLE- 309

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +   T++ + +  +P+ + A    + +   + E   IA L    E+   S S +
Sbjct: 310 ---KIAENSETVLFKDFAHSPSKVAATTKAVKE--QYKERTLIACL----ELHTYS-SLN 359

Query: 390 IDLA---EVLSLYNISHVWLSGFHVLALKD-----------ALPRSIHVHYSETMDGLFL 435
            +     +         V     H + +K            A  R   V Y+        
Sbjct: 360 AEFLSEYKGALDAADKAVVFYSPHAVEIKQLEEVSKEQIANAFQRDDLVIYT-NPKEFKD 418

Query: 436 FIQSSLVDGDVVVVKSSNSCG---FYRL 460
           F+ S  ++   VV+ SS + G   F  +
Sbjct: 419 FLFSENLEKSAVVLMSSGNYGGLDFEEV 446


>gi|329954168|ref|ZP_08295263.1| Mur ligase family, glutamate ligase domain protein [Bacteroides
           clarus YIT 12056]
 gi|328528145|gb|EGF55125.1| Mur ligase family, glutamate ligase domain protein [Bacteroides
           clarus YIT 12056]
          Length = 270

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 90/268 (33%), Gaps = 28/268 (10%)

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  +   E    +       ++  G + +       + L  +        IY++ + +  
Sbjct: 1   MDIYGTCEAYLESFRHYTTLIQPGGALII------RKGLALQPDVQPGVKIYTYSRDEG- 53

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DF     +  + + +++       + ++          +N +  + +  +     +   +
Sbjct: 54  DFHAENIRIGNGEIFIDFVAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIKQ 113

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++ F   +   +R+   +       + + Y  +PA +  ++  + ++  + + +  A+ 
Sbjct: 114 GMASFRGVD---RRFDFKIKTDKLVFLSD-YAHHPAEIAQSVKSIREL--YKDKKITAIF 167

Query: 376 GDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHVLALKDALPRSIHVHY 426
                +   ++ F+ D A+ LSL         Y      + G     + D L   I    
Sbjct: 168 --QPHLYTRTKDFYKDFADSLSLLDEVILTEIYPAREQPIPGVSSRLIYDNLRPGIEKCI 225

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +  + +   +       +V++V  +  
Sbjct: 226 CK-KEDIPALLAK--KPIEVLIVLGAGD 250


>gi|288919056|ref|ZP_06413397.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
 gi|288349596|gb|EFC83832.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
          Length = 573

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 132/427 (30%), Gaps = 84/427 (19%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA ++V       +   + +  +L IPV    D    L +L  A R      ++A+ GS
Sbjct: 95  RGADVIVASSALRDDHPEIVAARALGIPVMRRSD---WLPELTAAYR------LVAVAGS 145

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  MLT+ L +           +    +   +A++      G  ++ +    E  
Sbjct: 146 HGKTTTAAMLTLVLRAAG--------VDPTAVIGAEVAQLGGSAVAGTSDVFVLEADEYG 197

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P +AVIT +   H   F     + +   +    +   G + +  D      + 
Sbjct: 198 GAFAGLDPELAVITNVEWEHPDLFPDEAAVHAVFTDFAARVRPGGRLVVCGDHPGVAAVL 257

Query: 237 AKSHALG-------------------------------------------IKTIYSFGKS 253
           A+                                                   +  +G +
Sbjct: 258 ARLDQRAAAPDQPRTARDQPRSTPGQPAPEQPRTAPDQPGPAPEQPGSAARARVVDYGFA 317

Query: 254 KNADFQLRKWKQCSEQSWM-EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               +Q   +        +  V   G  + E+     G H+A N L  L   + L    +
Sbjct: 318 AGRSWQAVGYAPRPGGGSVSTVWHDGVEVGELALALPGPHVALNALAALATSAELGVAPE 377

Query: 312 TAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM----------KAAISVL 360
           TA++AL  F     R     + +   G    I + Y  +P  +           A   V 
Sbjct: 378 TALRALGTFSGAARRFDTVGQASTAGGTAVEIVDDYAHHPTEIRATLRAARDRAAGRQVW 437

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   PH   R  A+L D         +  + + ++ +      +   G H   L   + R
Sbjct: 438 AVTQPHTFSRLAALLDDFA--TAFEDADRVYVTDIYAARETDDL---GLHATDLAKRISR 492

Query: 421 SIHVHYS 427
                Y 
Sbjct: 493 PRRSAYV 499


>gi|157736495|ref|YP_001489178.1| UDP-N-acetylmuramate--L-alanine ligase [Arcobacter butzleri RM4018]
 gi|157698349|gb|ABV66509.1| UDP-N-acetylmuramate--alanine ligase [Arcobacter butzleri RM4018]
          Length = 435

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 53/361 (14%)

Query: 50  HYDGHDF---------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-------LG 93
           ++DGH+          I  A++     V    D         + ++              
Sbjct: 21  NFDGHEVSGSDMKNSPITKALEDEGIKVSCPQDASNIKDDFDLVIYSAAVTDENPELIQA 80

Query: 94  ALNKLAVAARLRSKATIIA------ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            L ++   +R  +   I+       + G+ GK+TT  ML   L     + A IG+ +   
Sbjct: 81  RLKQIRTLSRKEALPIILGDKKNYCVAGAHGKSTTTAMLASIL----NSSALIGAISKDF 136

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G               + +L      E      L  P+ A++T   P H+  +    +  
Sbjct: 137 GSNF----------RYVDKLVAFEADESDASFLLSNPYCAIVTNAEPEHMEYYH--YDYD 184

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                  + L       +N +D     LK ++  +    +Y     KN  + L+  + C 
Sbjct: 185 KFYESYEKFLSLAKVKVVNGEDKDVAKLKIENATI----LYPSKDIKNLCYTLKDNQPC- 239

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +  +++  G        G G+HMA N  + +        D++T           +G  
Sbjct: 240 --TKFDLKDLG---TFEVWGFGFHMATNASLAILAALN-ELDIETI---RKNLLNYKGIK 290

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           KR+        F +ID+ Y  +P  ++A +  +          +  VL    +    S +
Sbjct: 291 KRFDIVQANEKFVVIDD-YAHHPTEIEATMKSIELYDNLTNLNKRIVLWQPHKYSRTSDN 349

Query: 388 F 388
            
Sbjct: 350 L 350


>gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale
           ART12/1]
          Length = 104

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   L+  +    +       +  I+ DSR +     F  I G   DG+ FI  A++ G
Sbjct: 1   MTIEQLVSVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           A  ++   D+        I V  V ++  A+               +
Sbjct: 61  ACAIMTEKDVEVPAD---ITVIKVPNMREAMELAVPYFYDYPGKKCV 104


>gi|15643006|ref|NP_228048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
 gi|30316146|sp|Q9WY76|MURD_THEMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4980732|gb|AAD35325.1|AE001707_12 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
          Length = 430

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 109/345 (31%), Gaps = 49/345 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS         G++         +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMYHVLSGRGFKTFLGGNFGTP-----AVEALEGEYDYYVLE 155

Query: 167 LGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           +    L   E  +L++ +      +  I+  HL   S  +E   +K +      +     
Sbjct: 156 MSSFQLFWSERPYLSNFL------VLNISEDHLDWHSSFKEYVDSKLKPAFLQTEGDLFV 209

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N      E L+        K  +              W   +  +  E+ ++GK     
Sbjct: 210 YN---KHIERLRNLEGVRSRKIPF--------------WTDENFATEKELIVRGKKYT-- 250

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +  Q     L +  +     +     L +    +    R             ++
Sbjct: 251 --LPGNYPYQMRENILAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYND 308

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S      S  A +  LS        + + +   MC +G+  +  +    E  S   + H+
Sbjct: 309 SKA---TSTHAVLGALSNFD-----KVVLI---MCGIGK--KENYSLFVEKASP-KLKHL 354

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     L   + +  H    E M+  F         GDV+++
Sbjct: 355 IMFGEISKELAPFVGKIPHSI-VENMEEAFEKAMEVSEKGDVILL 398


>gi|167838005|ref|ZP_02464864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis MSMB43]
          Length = 504

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 139/462 (30%), Gaps = 74/462 (16%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ----KGAGLVVVNTDMVASIGSLSIPVFGV 88
           D+R   P     A+     D  +F+  A       G   +V  +  ++ +     P+   
Sbjct: 37  DTRETPPN--LAALTAAGIDA-EFVGGAFSPALIDGGIELVALSPGLSPLAEDLAPLVAA 93

Query: 89  DDVLG------------ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               G            AL  L           +IAITG+ GKTTT  +  +      + 
Sbjct: 94  ARARGIPVWGELEFFAQALATLGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGRK 150

Query: 137 YACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            A  G+ +  +   LT A       D  + EL    L       H   P  A I  I   
Sbjct: 151 VAVAGNISPSMLDRLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQD 206

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK- 254
           HL    G    A+AK  IF          LN DD+        + A       +FG ++ 
Sbjct: 207 HLDWHGGFAAYAAAKGRIF---GPRTVRVLNRDDAEVMKFAPPAAAADAPRAITFGLNEP 263

Query: 255 --------------------------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                                     +A     + ++       ++ L+           
Sbjct: 264 SADGDYGLLRENGIAWLVEAVDRDAADAPATPSRRRKQEAAHSPDIALKRLMPADALRIR 323

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N L    +   +       +          G   R            +D+S   
Sbjct: 324 GLHNAANALAAYALARAIDLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKGT 380

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AA+  L+Q       R + + G   + G+  +     +A          V L G
Sbjct: 381 NVGATVAALDGLAQ-------RTVLIAGGDGK-GQDFEPLAAPVARWCRA-----VMLIG 427

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               AL++AL    + +    T++       +    GD V++
Sbjct: 428 RDAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|162455913|ref|YP_001618280.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161166495|emb|CAN97800.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 495

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 123/400 (30%), Gaps = 54/400 (13%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNN 145
            V  +  AL    +A R       + + G+ GKTTT  M    L    +     IG    
Sbjct: 87  RVTTMAHALADHMLAGRSP-----LVVAGTHGKTTTSSMCAWILHEAGRDPGFLIGGLPK 141

Query: 146 HIGVPLTLARMP--VDVDFGIFELGMSHLGEIRFLTHLV--------------------R 183
           +      L R         G+  LG +  G  R  T  V                    +
Sbjct: 142 NFEASFRLPRSASSASDRRGLPLLGEAGAG--RRRTPFVVEGDEYDTAFFEKTPKFWHYQ 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+T++   H+  +       +A     E + +T  +     D     L ++S    
Sbjct: 200 PEVGVVTSMEHDHIDIYPDAASYEAAFRGFVERIPETELVVAAAHDPRVVELVSRSARAE 259

Query: 244 IKTIYSFGKSKNA---DFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299
           +      G   +     +     +        ++   G  +        G+H  +N +  
Sbjct: 260 VAWFALEGDDTHGRPPHWLAAPAEAGESGQSFDLYAGGVLAGRFALQMPGHHNVRNAIAA 319

Query: 300 LGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +   +      + TA  AL+ F       +R +  L +     + + +  +P ++   + 
Sbjct: 320 IAAAAQGFGVPLSTATTALAGFAGV----RRRQDLLFEARGVRVYDDFAHHPTAVDETLR 375

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-------DLAEVLSLYNISH-VWLSGFH 410
            L     H  G   AV           ++ H        + A+ + L  +      +G  
Sbjct: 376 ALRS--RHPAGALWAVFE--PRSATACRALHQEPYARAFEAADRVVLAPLGRPDIAAGER 431

Query: 411 V---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +     ++D          + ++D +   I     +GD +
Sbjct: 432 LDLDRLVRDIERGGKRAEAAASVDAIVTAIARDAREGDTI 471


>gi|146298178|ref|YP_001192769.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Flavobacterium johnsoniae UW101]
 gi|146152596|gb|ABQ03450.1| cytoplasmic peptidoglycan synthetase domain protein [Flavobacterium
           johnsoniae UW101]
          Length = 451

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 119/388 (30%), Gaps = 47/388 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKTT   M+   +       A        +    
Sbjct: 87  LKIYSYPEFLYEQSKNKTRVVIGGSHGKTTITSMILHVM--HYHNIAVDYMVGAQLEGFD 144

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  + DF + E        I      HL +P+IA+I+ IA  H++ F   E     
Sbjct: 145 TMVHLTEENDFMVLEGDEYLSSPIDRRPKFHLYQPNIALISGIAWDHINVFPTYENYVEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                E +   G +  N +D   + +   +     K  YS  +   AD            
Sbjct: 205 FEIFIEKITNGGILVYNENDPEVKRVSEAATNPIRKLPYSTPEYSVAD------------ 252

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               ++     M       G H   N+     I   +  D +   +A++ F   +G  KR
Sbjct: 253 GVTLLKTPEGDMP--IEVFGAHNLNNLAGAKWICQNMGVDEEDFYEAIASF---KGASKR 307

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                         + +  +P+ + A    + +  P+     +A L    E+   S S +
Sbjct: 308 LEKIAEGKGKVAYKD-FAHSPSKVAATTKAVKEQYPNRT--LVACL----ELHTYS-SLN 359

Query: 390 IDLAEV---LSLYNISHVWLSGFHVLALKD-----------ALPRSIHVHYSETMDGLFL 435
               +       Y    V       + +K            A  R   + Y+        
Sbjct: 360 AAFLKEYEGALEYADVAVVFYSPDAVKIKQLEEVTYEQIAAAFNRKDLIIYT-NPTEFKE 418

Query: 436 FIQSSLVDGDVVVVKSS---NSCGFYRL 460
           ++    +D   +++ SS       F  +
Sbjct: 419 YLFHLNLDNSALLLMSSGNYGGLNFDEV 446


>gi|153941125|ref|YP_001389483.1| cyanophycin synthetase [Clostridium botulinum F str. Langeland]
 gi|152937021|gb|ABS42519.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. Langeland]
 gi|295317584|gb|ADF97961.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. 230613]
          Length = 873

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 141/384 (36%), Gaps = 58/384 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSFSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G IR         + +IT +   H  L   + +E++A  KA
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQC 266
            + E ++K G + +N DD     +  +  +     I  F K+KN          +     
Sbjct: 593 LVGEAVKKDGYVVINADDEASISIINRIKS----KIILFTKNKNNPIISQYLDNKNLVLY 648

Query: 267 SEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            ++  + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L 
Sbjct: 649 LDEDTIYLKKLNKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLE 708

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F  +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G  
Sbjct: 709 SFSNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP 763

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETMD 431
              G+ + S  + +  +    N  +V++       G     + D L + I    +  +  
Sbjct: 764 ---GDRTNSSTLKVGNICGE-NFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKL 819

Query: 432 GLFLFIQSSLV-------DGDVVV 448
            + L  + +L         GD+V+
Sbjct: 820 NIILDEEEALKKAIEFSNPGDLVI 843


>gi|70732772|ref|YP_262535.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas fluorescens Pf-5]
 gi|68347071|gb|AAY94677.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas fluorescens Pf-5]
          Length = 467

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 123/369 (33%), Gaps = 37/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L     +    IG    +  V   L   P    F + E  
Sbjct: 123 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFAVSARLGGTP----FFVIEAD 178

Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +  V  RP  A++  +   H   F  +  I      +   +   G +   
Sbjct: 179 EYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHP 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-H 285
             +   + +        ++T           +Q++     ++ S  EV  +G S  VV  
Sbjct: 239 TTEPALQRVIEMGCWTPVQT-----TGAGGQWQVKLL--SADGSAFEVMFEGVSQGVVEW 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L TL     +       I  LS F   +   +R          T+ D+ 
Sbjct: 292 ELTGQHNVANALATLAAARHVGVVPSMGIAGLSAFKSVK---RRMEKVAEVHGVTIYDD- 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P ++   +  L      G+   IA++    E    S     H D     S+     
Sbjct: 348 FAHHPTAIATTLDGLR--KRVGDAPVIAII----EPRSNSMKLGAHRD-GLPESVNQADQ 400

Query: 404 VWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           V       L       A   ++    S++++G+   ++S    G  VV+  SN  GF   
Sbjct: 401 VIWYAPANLGWDLAATAALCTVPSIVSDSLEGIIERVKSQAKPGTQVVIM-SNG-GFGGL 458

Query: 458 -YRLINLLL 465
             +L   L 
Sbjct: 459 HGKLAEALR 467


>gi|170755898|ref|YP_001779747.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
 gi|169121110|gb|ACA44946.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
          Length = 873

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 141/384 (36%), Gaps = 58/384 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSFSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G IR         + +IT +   H  L   + +E++A  KA
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQC 266
            + E ++K G + +N DD     +  +  +     I  F K+KN          +     
Sbjct: 593 LVGEAVKKDGYVVINADDEASISIINRIKS----KIILFTKNKNNPIISQHLDNKNLVLY 648

Query: 267 SEQSWMEVQ--------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            ++  + ++        +    + +   G   +  +N +  +  +  L  DV+T  + L 
Sbjct: 649 LDEDTIYLKKLNKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLE 708

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F  +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G  
Sbjct: 709 SFSNEEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP 763

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETMD 431
              G+ + S  + +  +    N  +V++       G     + D L + I    +  +  
Sbjct: 764 ---GDRTNSSTLKVGNICGE-NFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKL 819

Query: 432 GLFLFIQSSLV-------DGDVVV 448
            + L  + +L         GD+V+
Sbjct: 820 NIILDEEEALKKAIEFSNPGDLVI 843


>gi|225874901|ref|YP_002756360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793781|gb|ACO33871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 495

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 119/375 (31%), Gaps = 33/375 (8%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ++G+ GKTTT  ML        + +A   + +  IG              G   +     
Sbjct: 112 VSGTHGKTTTTSMLAWIYEVASRRHA-GFTPSFLIGGVAENFGTSFQYKPGKAFIIEGDE 170

Query: 173 GEIRFLTHLVR-----PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +  F     +     P   ++T +   H   +  ++ + +A   +   + + G I    
Sbjct: 171 YDTAFFDKGPKFMHYFPDALILTHVEFDHADIYLDLDAVKTAFRRLVNLVPRRGRIVAFD 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHH 286
                     K+    +  +  +G   ++ +Q+    +Q     W  ++      E    
Sbjct: 231 ASPHLRDCVQKA----LCPVEFYGARPDSAWQVVDLVQQGGIMQWKVLRYGAPWAEFRMQ 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N      +       +    +AL+ F   +   +R          T+ID+ +
Sbjct: 287 LAGEHNAFNATAAAALAVGQGVPLAAITEALASFRSVK---RRLEVRAQVHGVTIIDD-F 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P +++  +  L    P    R  AVL         +   H  +  +     I    +
Sbjct: 343 AHHPTAIRETLRALRGAYP--GARLWAVLEPRSNTLRRNVFEHELVESLALADQIVMAQV 400

Query: 407 SGFHVLALKDAL----------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                +   + L           +    H    + G+   I +    GDVV +  SN  G
Sbjct: 401 FKSEAVPEAERLQPERVIAALEQQGKPAHLIPGVAGIVARIAAEARPGDVVAIL-SNG-G 458

Query: 457 F----YRLINLLLEE 467
           F     +L + L E 
Sbjct: 459 FDGIYEKLPHALQER 473


>gi|167586018|ref|ZP_02378406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           ubonensis Bu]
          Length = 503

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 113/382 (29%), Gaps = 51/382 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
             L        +  ++AITG+ GKTTT  +  +      K     G+ +  +   L  A 
Sbjct: 110 QALRALGASGYQPKVLAITGTNGKTTTTSLTGLLCERAGKKVGVAGNISPAMLDRLADAI 169

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + EL    L           P  A I  I   HL      +  A+AK  IF
Sbjct: 170 DATALPDVWVLELSSFQL----ETARTFAPDAAAILNITQDHLDWHGSFDAYAAAKGRIF 225

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADF------------Q 259
                  T  LN DD+        + A       +FG ++     D+            +
Sbjct: 226 GATT---TRVLNRDDAAVMKFAPAAGAADAPRTITFGLNEPVHEGDYGLLRDNGIAWLVE 282

Query: 260 LRKWKQCSEQSWME------VQLQGKSMEVVHHG-----IGYHMAQNMLMTLGIVSILTA 308
                   E +         V     + + +         G H A N L    +   +  
Sbjct: 283 AIDRDATDEPATGRRRRRDAVHTPDIAQKRLMPADALRIRGLHNAANALAAFALARAIDL 342

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                +          G   R            +D+S   N  +  AA+  L+Q      
Sbjct: 343 PAALLLHG---LREYRGEAHRVELIATLDDVDYVDDSKGTNVGATVAALDGLAQ------ 393

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYS 427
            R + + G   +  + S      +A          V L G    A++DAL    + +   
Sbjct: 394 -RIVLIAGGDGKGQDFSP-LAAPVARWCRA-----VLLIGRDAPAIRDALADTGVPLVDH 446

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            T++            GD V++
Sbjct: 447 ATLEAAVRAASELAEPGDAVLL 468


>gi|15618810|ref|NP_225096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae CWL029]
 gi|16752135|ref|NP_445502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae AR39]
 gi|33242264|ref|NP_877205.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae TW-183]
 gi|30316148|sp|Q9Z705|MURD_CHLPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4377221|gb|AAD19039.1| Muramoylalanine-Glutamate Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189877|gb|AAF38745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae AR39]
 gi|33236775|gb|AAP98862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae TW-183]
          Length = 417

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 117/380 (30%), Gaps = 65/380 (17%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V    SL IPV  V D+  AL                 ITGS GKTTT   LT  L
Sbjct: 71  YHPWVEQAVSLKIPV--VTDIQVALKTPEFQRYPSF-----GITGSNGKTTTTLFLTHLL 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +++      +G+    I                + E+    L       H+     +V  
Sbjct: 124 NTLGIPAIAMGNIGLPI------LDHMGQPGVRVVEISSFQLATQEE--HIPALSGSVFL 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
             +  HL     ++    AK  I + L +  T ++            +        IYS 
Sbjct: 176 NFSRNHLDYHRNLDAYFDAKLRIQKCLRQDKTFWVW----------EECSLGNSYQIYS- 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-AD 309
                      + ++  ++                  I  H   N      + + +    
Sbjct: 225 ----------EEIEEILDKG------------DALKPIYLHDRDNYCAAYALANEVGWVS 262

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  +KA+  F        R      +     I++S      +++ A+  +         
Sbjct: 263 PEGFLKAIRTFEKPA---HRLEYLGKKDGVHYINDSKATTVTAVEKALMAV-------GK 312

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             I +LG   + G+        LA VLS     HV   G     + DAL   I +  S+ 
Sbjct: 313 DVIVILGGKDKGGDFPA-----LASVLSQT-TKHVIAMGECRQTIADALSEKIPLTLSKD 366

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +       Q+   +GD V++
Sbjct: 367 LQEAVSIAQTIAQEGDTVLL 386


>gi|319406008|emb|CBI79639.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella sp. AR
           15-3]
          Length = 468

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 118/406 (29%), Gaps = 45/406 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD--VLGALNKLAVAARLRSKATII 111
           +F+   +  G  L+      V       +I + G  +  V      L            I
Sbjct: 65  EFVALVLAPGVPLIYPRPHWVVEKARQENIEIIGDIELFVRARNLFLQQHGFDDQDIPFI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT  +L   L  +       G+    I       +  V     + E     
Sbjct: 125 AITGTNGKSTTTTLLAHLLEKMGYDVQMGGNIGTAIL----TLKPFVKKRIYVIECSSFQ 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +     L   ++P + ++  + P H+      E     K  +     +     ++ D   
Sbjct: 181 I----ELAPSLQPTVGLLLNLTPDHIDRHGSFERYVQVKEYVISRASR---ALISIDSLV 233

Query: 232 FELLKAKSHALGIKTIYSFGKSK--NADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHG 287
              L  K    G + I    K       F +   K  S     +  +      +  +   
Sbjct: 234 CRALYQKLFDEGHQ-IDPVSKEHFVKNGFYVEGTKLFSIRHGQYHLLA----DLANITSL 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A+N LM L  + IL     T +          G   R +     G    I++S  
Sbjct: 289 RGSHNAENALMALATLQILKI---TTLNIEEHLASYLGLAHRMQQVCRIGSVLFINDSKA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +   A++  + I          V G   E G  +             Y I   +L 
Sbjct: 346 TNAEASVPALATFNNIF-------WIVGGQAKEGGIDALKGF--------FYKIRKAYLI 390

Query: 408 GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G         +  A P S+       +          +    V++ 
Sbjct: 391 GNAVENFARIIGSAFPFSMSFTLENAVREAVNDATHDINQESVILF 436


>gi|166711274|ref|ZP_02242481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 468

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 102/322 (31%), Gaps = 40/322 (12%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               A +G+    +   L     P    +   EL     G++        P +AV+  + 
Sbjct: 141 GHRTALVGNIGQPLLEVLAPQPPPA---YWAIELSSYQTGDVGR--SGAHPELAVVLNLF 195

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           P HL            K  +         + LN  D     L+     L    +  F   
Sbjct: 196 PEHLDWHGDEARYVRDKLSLVTEGRPR-IVLLNAADPLLASLQ-----LPDSEVLWFNHP 249

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +    +        EQ+  +               G H  +N+   L  +  L  D +  
Sbjct: 250 EGWHLRG-DVVYRGEQAIFD--------SADVPLPGVHNRRNLCAVLAALEALGLDAEAL 300

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             A   F P      R +   +    + +++S +  P +  AA++  +Q       RR+A
Sbjct: 301 APAALSFRPLP---NRLQVLGSVDGISYVNDSISTTPHASLAALACFAQ-------RRVA 350

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---GFHVLALKDALPRSIHV--HYSE 428
           +L    + G     +H D A  ++      +      G  + AL   L  +     H + 
Sbjct: 351 LLVGGHDRG---LDWH-DFARHMAQQAPLEIITMGANGPRIHALLAPLADAGRFGLHAAN 406

Query: 429 TMDGLFLFIQSSL-VDGDVVVV 449
            ++      + +L   G VV++
Sbjct: 407 DLEHAMQLARDALGGQGGVVLL 428


>gi|241664309|ref|YP_002982669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           pickettii 12D]
 gi|240866336|gb|ACS63997.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ralstonia pickettii
           12D]
          Length = 545

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 130/398 (32%), Gaps = 62/398 (15%)

Query: 83  IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +PV+G  ++   AL  L  A        ++AITG+ GKTTT  +    +    KT    G
Sbjct: 144 VPVWGEIELFARALAGLKAA--QGYAPRVLAITGTNGKTTTTALTGALVQRSGKTVGVAG 201

Query: 142 SYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           + +      L+   +  D   D  + EL    L      TH +    A +  I   HL  
Sbjct: 202 NISPSALDKLSEC-VDADTLPDVWVLELSSFQL----ETTHTLDADAATVLNITQDHLDW 256

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A+AK  IF          LN  D+      +K+         +FG ++     
Sbjct: 257 HGTMEAYAAAKGRIF---GANTVRVLNRQDAAVMAFASKNGGD-----ITFGINEPGTPD 308

Query: 260 LRKWKQCSEQSWMEV-QLQGKSMEVV--------------------------HHGIGYHM 292
                +     W+ + +   + +                                 G H 
Sbjct: 309 ALGLLRDGGMPWIVLAEADEEDLPKPTRRKKGDNAPAAPVPVRLKRLMPADALRIRGLHN 368

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N +  L +   +   V   +          G   R             D+S   N  +
Sbjct: 369 ATNAMAALALCRAIGLPVSALLHG---LRDYAGEPHRVELIAAFDDIEFFDDSKGTNVGA 425

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             AA+S LS+         + + G   +  + S      LAE ++ +    V L G    
Sbjct: 426 TVAALSGLSK-------HVVLIAGGDGKGQDFSP-----LAEPVAQF-ARAVVLIGRDAP 472

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +++AL    + +  + T++       +    GD V++
Sbjct: 473 LIREALANTGVALIDAPTLEAAVPQAAAQAQPGDAVLL 510


>gi|330811945|ref|YP_004356407.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380053|gb|AEA71403.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 449

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 126/370 (34%), Gaps = 39/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     +    +++       F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAG---MSPGFLIGGVPQNFSVSARLGGTPFFVIEADE 161

Query: 170 SHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V  RP  A++  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLVRTIPSEGLVIHPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HH 286
            +   + +        ++T           +Q++  K   + S  EV  +G S  VV   
Sbjct: 222 TEPALQRVIEMGCWTPVQT-----TGAGGQWQVKLLK--DDGSQFEVMFEGVSQGVVEWD 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L TL     +       I AL+ F   +   +R          T+ D+ +
Sbjct: 275 MTGQHNVANALATLAAARHVGVVPSMGIAALNAFKSVK---RRMEKVAEVRGITIYDD-F 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P ++   +  L      G+   IA++    E    S     H D     S+ +   V
Sbjct: 331 AHHPTAIATTLDGLR--KRIGDAPLIAII----EPRSNSMKLGAHRD-GLPESVVDADQV 383

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
                   G+ + A   AL     +  S++++G+   ++S    G  VV+  SN  GF  
Sbjct: 384 IWYAPANLGWDLGATA-ALCTVTSI-VSDSLEGIIERVKSQAQPGTHVVIM-SNG-GFGG 439

Query: 458 --YRLINLLL 465
              +L   L 
Sbjct: 440 LHGKLAEALK 449


>gi|167571351|ref|ZP_02364225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           oklahomensis C6786]
          Length = 503

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 125/403 (31%), Gaps = 57/403 (14%)

Query: 77  SIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +     IPV+G ++    AL+ L           +IAITG+ GKTTT  +  +      K
Sbjct: 93  AARERGIPVWGELEFFAQALSTLGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGK 149

Query: 136 TYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             A  G+ +  +   L  A +      D  + EL    L       H   P  A I  I 
Sbjct: 150 KVAVAGNISPAMLDKLAEA-IDAATLPDVWVLELSSFQL----ETAHTFAPDAATILNIT 204

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL    G    A+AK  IF          LN DD+        + A       +FG +
Sbjct: 205 QDHLDWHGGFAAYAAAKGRIF---GPRTVRVLNRDDAEVMKFVPAAAAADAPRAITFGLN 261

Query: 254 KNAD---------------FQLRKWKQCSEQSWMEVQLQGKSMEV-----------VHHG 287
           + AD                +          +    + Q  +                  
Sbjct: 262 EPADGGDFGLLRENGIAWLVEAVDRDAADAPTSSRRRKQEAAHPPDIALKRLMPADALRI 321

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N L    +   +       +          G   R            +D+S  
Sbjct: 322 RGLHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKG 378

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  AA+  L+Q       R + + G   +  +        LA  +  +    V L 
Sbjct: 379 TNVGATVAALDGLAQ-------RAVLIAGGDGKGQDFEP-----LAAPVERW-CRAVMLI 425

Query: 408 GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G   LA++ AL    + +    T++       +    GD V++
Sbjct: 426 GRDALAIRAALADTGVPLADHATLEAAVRAASTLAQSGDAVLL 468


>gi|329766939|ref|ZP_08258467.1| hypothetical protein HMPREF0428_00164 [Gemella haemolysans M341]
 gi|328837664|gb|EGF87289.1| hypothetical protein HMPREF0428_00164 [Gemella haemolysans M341]
          Length = 433

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 134/379 (35%), Gaps = 67/379 (17%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFEL 167
           I+ +TG+ GKTTT  ++   L +  + +       N +   ++   +    D    I E+
Sbjct: 49  IVFVTGTNGKTTTSNLIGHTLKTAGENFINNFEGANMLDGIISTFAIQAKNDTKLAIIEI 108

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLN 226
                G IR +   + P   VI       +  F  I+ + +    I E LE K   + LN
Sbjct: 109 ---DEGSIRRVMKYITPTKFVINNFFRDQIDRFGEIDTLIAT---IGEQLEGKNIQLILN 162

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCS--------------- 267
            DD F   L       G   IY FG SK+A    DF + + K C                
Sbjct: 163 SDDPFVARLSK----YGEDNIY-FGISKDAYKFSDFGISESKFCPNCGMELIYDHVHYSQ 217

Query: 268 ----EQSWMEVQLQGKSMEVV-------------------HHGIGYHMAQNMLMTLGIVS 304
                 S  + + +    EV                        G +   N+L    ++ 
Sbjct: 218 LGFYHCSKCDFKHRDVKYEVTNATVEPFINMTINEDTLIETKLAGDYNIYNLLAAYSLLK 277

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +     L  +    GR +    A   G   L++     NPA + A++++ + I 
Sbjct: 278 ELGLQDEKIKYGLESYTATNGRMQSISLAS--GSTVLLN--LAKNPAGLNASLAIANSIK 333

Query: 365 PHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
                  + VL D    G ++S  +  D  ++L+   I+++  SG     L   L     
Sbjct: 334 EEINY--LLVLNDNGADGIDISWIWDTDF-DILNGQKINNIICSGKRAKELALRLKYSGL 390

Query: 421 SIHVHYSETMDGLFLFIQS 439
           + +V   E++      ++S
Sbjct: 391 NANVVVLESISEAVEKLKS 409


>gi|269795576|ref|YP_003315031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
 gi|269097761|gb|ACZ22197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
          Length = 487

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 135/401 (33%), Gaps = 52/401 (12%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              +  +PV+   +V  A       A     A  +A+TG+ GKTTT EML   L +  + 
Sbjct: 73  DAAAAGVPVWS--EVELAWRLRVPTASTGQPAPWLALTGTNGKTTTVEMLLSVLEADGRR 130

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A +G+       PL  A +  +++    EL    L      T  + P +  +  +A  H
Sbjct: 131 AAAVGNVGR----PLVEAVVDPEIEVLAIELSSFQL----HFTSSMSPLVGAVLNVAADH 182

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTI-YSFGKSK 254
           L      EE A+AK ++F           N  D   E L   +  + G + +  + G   
Sbjct: 183 LDWHGTFEEYAAAKGKVFHQ--AQVACVYNVADPVTERLVQDADVVDGARAVGVTVGAPG 240

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIG------YHMAQNMLMTL 300
            ++  L +   C     +      +        +++ + H  G       H+  + L   
Sbjct: 241 RSELGLVEGVLCDRAFHLPADDPRRHQSAAELGTLDDLGHLAGPDGSVPSHVVFDALAAA 300

Query: 301 GIVSILTADVDTAIKALSVFH---PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            +      +     + L  F     +     +      +G    +D+S   N  +  A++
Sbjct: 301 AMARAFGVEARAVREGLRAFRPGAHRIVTVAQVPAVEGEGTVAFVDDSKATNAHAAAASL 360

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              +       G  + V G + + G        D A+ L       V L G     L DA
Sbjct: 361 GGFA------PGTVVWVAGGLAK-GATFDDLVRDRADRLRA-----VVLIGTDHRGLADA 408

Query: 418 LPRS------IHVHYSET---MDGLFLFIQSSLVDGDVVVV 449
           L R       + V   +T   M             GD V++
Sbjct: 409 LARHAGEVPVVEVDPGDTGTVMQRAVQTAHQMARPGDTVLL 449


>gi|126662284|ref|ZP_01733283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Flavobacteria bacterium BAL38]
 gi|126625663|gb|EAZ96352.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Flavobacteria bacterium BAL38]
          Length = 451

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 128/388 (32%), Gaps = 47/388 (12%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKTT   M+   +                +    
Sbjct: 87  LKIYSYPEFLYEQSKNKTRVVIGGSHGKTTITSMILHVM--HYHNIEVDYMVGAQLEGFD 144

Query: 152 TLARMPVDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           T+  +  D DF + E         ++R   HL +P+IA+++ IA  H++ F   +     
Sbjct: 145 TMVHLTEDNDFIVLEGDEYLTSPIDLRPKFHLYQPNIALLSGIAWDHINVFPTFDNYVEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                  + + G +  N +D   + +  ++     K  Y     +   + +         
Sbjct: 205 FRIFANQITRGGILVYNEEDEAVKAVAEETENQIRKIAY-----QTPSYTVEN------G 253

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +    +G    +     G H   N+     I   +  D     +A++ F     R ++
Sbjct: 254 TTLLDTPEG---PMPIEVFGAHNLSNLAGAKWICQCMGVDEAEFYEAIASFKGASKRLEK 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              + N+    +  + +  +P+ + A       +      R++       E+   S S +
Sbjct: 311 IAESANK----VAYKDFAHSPSKVSA---TTKAVKAQYPDRKVVAC---LELHTYS-SLN 359

Query: 390 IDLAE----VLSLYNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMDGLFL 435
            +  +     L   +++ V+ S   V            + ++  R   + Y+        
Sbjct: 360 AEFLKEYQGALDAADVAVVFYSPDAVKIKRLEEVTYDQIAESFQREDLIIYT-NPTEFKD 418

Query: 436 FIQSSLVDGDVVVVKSS---NSCGFYRL 460
           F+ S  +D   +++ SS       F  +
Sbjct: 419 FLFSQNLDNSALLLMSSGNYGGLNFDEV 446


>gi|158334692|ref|YP_001515864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acaryochloris
           marina MBIC11017]
 gi|189082870|sp|B0C915|MURD_ACAM1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158304933|gb|ABW26550.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Acaryochloris marina MBIC11017]
          Length = 461

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 125/364 (34%), Gaps = 39/364 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
             +L +A R   +   + ITG+ GKTTT  ++     +        G+          LA
Sbjct: 98  FGELELAWRSLKQYPWVGITGTNGKTTTTAIVEAIFKAAGLRAPACGNIG---YSACELA 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                +D+ I E+    +      +  + P I V TT +P HL     +E     KA + 
Sbjct: 155 LAGDPLDWVIAEVSSYQI----ESSPTLAPTIGVWTTFSPDHLERHGTVECYREIKALL- 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME- 273
             L ++    LN DD   + L            ++     +        +      ++E 
Sbjct: 210 --LNQSKQKILNGDD---QGLIKGLPWRWADAYWTSSHGPSLPDACNGQRCPVPNIFIEE 264

Query: 274 --VQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             V+++G+ +  V     +G H  QN+L+ + +  +     D    A+S F    G   R
Sbjct: 265 GWVKVEGEPIVQVSSMRMLGVHNQQNLLLAVAVAHLAGIGKDAIATAVSTF---PGVAHR 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  + +  ++ ++  +       I + G   ++G+      
Sbjct: 322 LEHICTWQGVDFINDSKATNYEAAQTGLAAVNSPA-------ILIAGGEAKVGDDQAWLQ 374

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLF---LFIQSSLVDG 444
                       + V L G    A    L    +  Y   +TM+        +  SL   
Sbjct: 375 ------TIQAQAAKVLLIGSAAGAFSQRLKAIGYDDYEIVDTMNKAVTRAAELAPSLQAK 428

Query: 445 DVVV 448
            V++
Sbjct: 429 SVLL 432


>gi|315635654|ref|ZP_07890917.1| UDP-N-acetylmuramate--L-alanine ligase [Arcobacter butzleri JV22]
 gi|315479951|gb|EFU70621.1| UDP-N-acetylmuramate--L-alanine ligase [Arcobacter butzleri JV22]
          Length = 435

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 53/361 (14%)

Query: 50  HYDGHDF---------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-------LG 93
           ++DGH+          I  A++     V    D         + ++              
Sbjct: 21  NFDGHEVSGSDMKNSPITKALEDEGIKVSCPQDASNIKDDFDLVIYSAAVTDENPELIQA 80

Query: 94  ALNKLAVAARLRSKATIIA------ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            L ++   +R  +   I+       + G+ GK+TT  ML   L     + A IG+ +   
Sbjct: 81  RLKQIRTLSRKEALPIILGDKKNYCVAGAHGKSTTTAMLASIL----NSSALIGAISKDF 136

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G               + +L      E      L  P+ A++T   P H+  +    +  
Sbjct: 137 GSNF----------RYVDKLVAFEADESDASFLLSNPYCAIVTNAEPEHMEYYH--YDYD 184

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                  + L       +N +D     LK ++  +    +Y     KN  + L+  + C 
Sbjct: 185 KFYESYEKFLSLAKVKVVNGEDKDVAKLKIENATI----LYPSKDIKNLCYTLKDNQPC- 239

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +  +++  G        G G+HMA N  + +        D++T           +G  
Sbjct: 240 --TKFDLKDLG---TFEVWGFGFHMATNASLAILAALN-ELDIETI---RKNLLNYKGIK 290

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           KR+        F +ID+ Y  +P  ++A +  +          +  VL    +    S +
Sbjct: 291 KRFDIVQANEKFVVIDD-YAHHPTEIEATMKSVELYDNLTNLNKRIVLWQPHKYSRTSDN 349

Query: 388 F 388
            
Sbjct: 350 L 350


>gi|254446804|ref|ZP_05060279.1| UDP-N-acetylenolpyruvoylglucosamine reductase, putative
           [Verrucomicrobiae bacterium DG1235]
 gi|198256229|gb|EDY80538.1| UDP-N-acetylenolpyruvoylglucosamine reductase, putative
           [Verrucomicrobiae bacterium DG1235]
          Length = 759

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 111/372 (29%), Gaps = 45/372 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +    A +     +IAI GS GKTTT  ML   L ++      +       G P    
Sbjct: 90  LRRGECLALISRGRKLIAIAGSHGKTTTCGMLIDVLDTLGFGCDYLLGAQFSSGDPYR-- 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 ++ + E+  S  G I     L  P I VI  +   H + ++  E   +A   + 
Sbjct: 148 --SDGNEWLVAEIDESD-GTID----LFEPEITVIVNVDHDHHARYATEEAYFAAFEGLV 200

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                 G + LN D      +  +  +     + S G+      +  +    +  SW  +
Sbjct: 201 ARTR--GQVILNAD------VAERLRSFASVPLLSLGEGGEVGLKAER----AGSSWTSL 248

Query: 275 QLQGKSMEV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            L G       + +  G   A +            A ++                +R RC
Sbjct: 249 SLTGAVTLDGALINRSGQMNACDAGFAFLASGSAGARIE-----SGQAFEFRSIKRRQRC 303

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             N     + ++ Y  +P  + +            +G    V+         ++      
Sbjct: 304 WYNSPNIQVFED-YAHHPEEIDSVFESFGT----RKGWSTVVVFQ-AHRYSRTRELKRAF 357

Query: 393 AE---------VLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLV 442
           A          +L +Y  S   L G     L  A   R+  V Y          +     
Sbjct: 358 ARSLANCEELVLLDVYAASESPLEGGMAEDLLSACRERTEKVVYVPESSDPIGMLAERAR 417

Query: 443 DG-DVVVVKSSN 453
            G   ++   + 
Sbjct: 418 RGPTRILFLGAG 429


>gi|269302690|gb|ACZ32790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae LPCoLN]
          Length = 417

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 117/380 (30%), Gaps = 65/380 (17%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V    SL IPV  V D+  AL                 ITGS GKTTT   LT  L
Sbjct: 71  YHPWVEQAVSLKIPV--VTDIQVALKTPEFQRYPSF-----GITGSNGKTTTTLFLTHLL 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +++      +G+    I                + E+    L       H+     +V  
Sbjct: 124 NTLGIPAIAMGNIGLPI------LDHMGQPGVRVVEISSFQLATQEE--HIPALSGSVFL 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
             +  HL     ++    AK  I + L +  T ++            +        IYS 
Sbjct: 176 NFSRNHLDYHRNLDAYFDAKLRIQKCLRQDKTFWVW----------EECSLGNSYQIYS- 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-AD 309
                      + ++  ++                  I  H   N      + + +    
Sbjct: 225 ----------EEIEEILDKG------------DALKPIYLHDRDNYCAAYALANEVGWVS 262

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  +KA+  F        R      +     I++S      +++ A+  +         
Sbjct: 263 PEGFLKAIRTFEKPA---HRLEYLGEKDGVHYINDSKATTVTAVEKALMAV-------GK 312

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             I +LG   + G+        LA VLS     HV   G     + DAL   I +  S+ 
Sbjct: 313 DVIVILGGKDKGGDFPA-----LASVLSQT-TKHVIAMGECRQTIADALSEKIPLTLSKD 366

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +       Q+   +GD V++
Sbjct: 367 LQEAVSIAQTIAQEGDTVLL 386


>gi|320530967|ref|ZP_08032000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Selenomonas
           artemidis F0399]
 gi|320136832|gb|EFW28781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Selenomonas
           artemidis F0399]
          Length = 467

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 89/328 (27%), Gaps = 41/328 (12%)

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +        G+    +       R+P +      E+    +      T     HIA   
Sbjct: 145 RAHFPAVGVGGNIGVPLIDEA--LRIPAEGAIAA-EISSYQM----EATQYFHVHIAAEL 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + P H+     +E   + K ++F        + LN DD     + A++           
Sbjct: 198 NVTPDHIVRHGSMEVYQAMKEKLFAWQTPDDFLVLNDDDPHTRGMAARAKGRVCLFSRRH 257

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSIL 306
             ++ A           +   + +   G   E+V        G H  +N L       + 
Sbjct: 258 ALAEGAYI---------DGGMIVIVWDGVRHELVPVAELGIRGGHNVENTLAAAASAFLA 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L  F   E    R       G     ++S   N  +   A+         
Sbjct: 309 GVTPEEMRPVLRSFRGVE---HRIEPVREIGGVPYYNDSKATNTDAAIKALEAF------ 359

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422
            +G  + + G   +M +L+          L       + L G        A   +     
Sbjct: 360 -DGHIVLIAGGDDKMTDLTDFMR------LVQERTDELILVGAAAERFAAAAVDAGIAPA 412

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
           H+H     M+       +       V++
Sbjct: 413 HIHRVGYDMEAAVHLAHTLARSPQTVLL 440


>gi|254446684|ref|ZP_05060159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
 gi|198256109|gb|EDY80418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
          Length = 429

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 102/344 (29%), Gaps = 49/344 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +  I+ ITG+ GKTT  E +T A SS        G+    I     +A         + E
Sbjct: 104 RGPIVVITGTNGKTTLTEFITSAFSSAGIEAYACGNIGRPISSL--VADDCNLEAIAVCE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +          +T  +     + T     HL     +E     K  + +       +F  
Sbjct: 162 VSSFQ----AEITKRLHADSLLWTNFDEDHLDRHKSLESYFKCKYTLTQLQRGDVFLF-- 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D   +         G +  Y+       D  L   +     +  E   +  +      
Sbjct: 216 --DESVKEF-------GERFNYAIPDEGLIDSSLDALELGVAGTVFETLPERNTY----- 261

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                     L+   +   +  D    I+A + F        R    +NQ   +  D+S 
Sbjct: 262 ----------LIARALWLRMGLDEGELIEAANNFKKSP---HRMELIVNQDGISYWDDSK 308

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           + N  ++  A+              +  +G     G     F   +A V S  +IS   L
Sbjct: 309 STNFHAVYGALKRFEN--------PVVWIGGGKNKGGDLPRF---VARVAS--SISSAHL 355

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L  A     + V   E ++       +    G  +++
Sbjct: 356 IGETSAELAAAFEEHGVPVRVYEDLEEAVAGANAMAESGSNILL 399


>gi|53726030|ref|YP_104096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           mallei ATCC 23344]
 gi|238561283|ref|ZP_00442376.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           mallei GB8 horse 4]
 gi|254202817|ref|ZP_04909180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei FMH]
 gi|62900498|sp|Q62GS5|MURD_BURMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52429453|gb|AAU50046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei ATCC 23344]
 gi|147747064|gb|EDK54141.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei FMH]
 gi|238525010|gb|EEP88440.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderia
           mallei GB8 horse 4]
          Length = 504

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 128/403 (31%), Gaps = 56/403 (13%)

Query: 77  SIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +     IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K
Sbjct: 93  AARERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGK 149

Query: 136 TYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             A  G+ +  +   LT A       D  + EL    L       H   P  A I  I  
Sbjct: 150 KVAVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQ 205

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL    G    A+AK  +F          LN DD+        + A       +FG ++
Sbjct: 206 DHLDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNE 262

Query: 255 NA---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            A   D+ L                         + ++    +  ++ L+          
Sbjct: 263 PAADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRI 322

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N L    +   +       +          G   R            +D+S  
Sbjct: 323 RGLHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKG 379

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  AA+  L+Q +    G      GD    G+  +     +A          V L 
Sbjct: 380 TNVGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLI 426

Query: 408 GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G    AL++AL    + +    T++       +    GD V++
Sbjct: 427 GRDAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 469


>gi|300775509|ref|ZP_07085370.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Chryseobacterium gleum
           ATCC 35910]
 gi|300505536|gb|EFK36673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Chryseobacterium gleum
           ATCC 35910]
          Length = 445

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 115/360 (31%), Gaps = 42/360 (11%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L   +            T + I GS GKTT   M+   L+  +K           +    
Sbjct: 87  LKIYSYPEFLYEQSKNKTRVVIAGSHGKTTITSMILHVLNFHRKDV--DFMVGAQLEGFD 144

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASA 209
            + ++  D DF + E        I   +  +  +P+IA+++ IA  H++ F   ++    
Sbjct: 145 CMVKLTQDNDFMVLEGDEYLSSPIDLRSKFLLYQPNIALMSGIAWDHINVFKTFDDYIEQ 204

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
             +    +   G +  N +D     +   +     K  Y     K  ++++   K     
Sbjct: 205 FRKFVASITAGGVLVYNEEDPEVVKVVENAENYFRKIPY-----KTPEYEISNGK----- 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               V L+ +  +V     G H   N+     I   L    +   +A+  F   +G  KR
Sbjct: 255 ----VYLKTEMGDVPLSVFGAHNLLNLEGARHICQQLGIMDEDFYEAIMSF---KGASKR 307

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +    L  + +   P+ +KAA+    +     +           E+   S S +
Sbjct: 308 LEKVEREDKGILYKD-FAHAPSKVKAAVKAFVEQFKTDKKY------GFLELHTYS-SLN 359

Query: 390 IDLAEVLSLY--NISH-VWLSGFHVLALKDALP----------RSIHVHYSETMDGLFLF 436
               E        +   V       L +K   P          R+ H+      + L  +
Sbjct: 360 PAFLEQYDHAMDGLDEAVVFYSEDALKIKRMEPISPEFIKEKFRNDHLKVFTNAEDLHAY 419


>gi|300741263|ref|ZP_07071284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|311113338|ref|YP_003984560.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380448|gb|EFJ77010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|310944832|gb|ADP41126.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 533

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 115/380 (30%), Gaps = 54/380 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L       + R     + +TG+ GKTTT  M+   L +  K    +G+        +   
Sbjct: 150 LAWRLNQRQGRVTPKWLCLTGTNGKTTTVGMVDSILKAAGKKSLQVGNVGMPAVYAV--- 206

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 +F   EL    L      T  + P+ +V+  +A  H+      E   + KA ++
Sbjct: 207 ADDEPYEFFAVELSSFQL----HWTSSLSPYASVVLNVAEDHVDWHGSFEAYKADKARVY 262

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSE-- 268
           E  +       N D +    +  ++  +          ++                    
Sbjct: 263 ENTQA--ACIFNTDHADTLRMVEEADVIEGARAIGISSTEIPSVSMLGLAENIIVDRAFL 320

Query: 269 QSWMEVQLQGKSMEVVHHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           ++     L+   +E +    G     H  +N L    +        +            +
Sbjct: 321 KNRYSEALELGVLEDLAPVPGQAPAQHTVENALAAAALCRAANIAPEAVRDG---LRSYK 377

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R +  L +     +++S   NP +  A++S    +     G     L    E  +L
Sbjct: 378 PGAHRNQTVLYRDGIQWVNDSKATNPHAANASMSAYPSLIWIAGG-----LSKGVEYDDL 432

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--------------- 429
                  +A+  S      V + G     LK +L +  +  +  T               
Sbjct: 433 -------IAQHASRLKA--VLIIGTDTAGLKTSLAK--YASHVPTYNMTASANDPSDGVT 481

Query: 430 -MDGLFLFIQSSLVDGDVVV 448
            M+   +  +    +GD V+
Sbjct: 482 VMEAAVVKAEELAAEGDTVL 501


>gi|56416380|ref|YP_153454.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma marginale str. St.
           Maries]
 gi|56387612|gb|AAV86199.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma marginale str. St.
           Maries]
          Length = 278

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 29/267 (10%)

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E +    ++    ++  G   +         L          +  ++G  +  D +   
Sbjct: 1   MEALERVFSDFLRNVKAGGASVMP------SRLSFTLGNGTKCSKITYGL-EGGDLRASN 53

Query: 263 WKQCSEQSWMEVQ-LQGKSMEV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                + +  ++  L G+ +         G H  +N L    +   +           + 
Sbjct: 54  TTYMGDATVFDIVGLNGEEICCGVRLPVPGRHNVENALAAAAVAKHIGVG---CNYIKAG 110

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G G+R+    N G  T +D+ Y  +P  ++A+ +     +    GR I +L    
Sbjct: 111 LEGFMGVGRRFEIIANVGGVTFVDD-YAHHPTEIEASRNAAKLSTTS--GRVIGIL--QP 165

Query: 380 EMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDAL--------PRSIHVHYSE 428
                 Q F  D    +S ++   ++ V+ +G  V++  ++L             V ++ 
Sbjct: 166 HRFTRVQHFFKDFTSAISKFDYLILTDVYPAGEEVISGCESLDIVREIKSRGFDQVVHAS 225

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           T D +   + S    GDVV+   + S 
Sbjct: 226 TPDAITDIVASVAQPGDVVIAMGAGSI 252


>gi|148657882|ref|YP_001278087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
 gi|166224765|sp|A5UZT4|MURD_ROSS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148569992|gb|ABQ92137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
          Length = 466

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 130/460 (28%), Gaps = 61/460 (13%)

Query: 43  FFAIKGPHY---D--GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL----- 92
           F A++G      D  G D +  ++   AGL +                  V +       
Sbjct: 25  FLALQGADVTVTDLRGPDDLRASLDALAGLPIRFVLGEHRDDDFRRAEIVVRNPAVPPNS 84

Query: 93  GALNKLAVAA----------RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             L     A                  I+ +TG+ GKTTT  +L   L          G+
Sbjct: 85  RYLQIARAAGATIEMEMTIFFRLCPGPILGVTGTKGKTTTTLLLGAMLREQFPDTVIAGN 144

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                   L        V   + EL    L  +      + P IA ITTIAP HL     
Sbjct: 145 LRISALEQLPTITATTPV---VLELSSFALEGLGE--AGLSPKIACITTIAPDHLDRHGT 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E    AK +I+        + LN D      + A         ++    +  A     +
Sbjct: 200 MEAYILAKEQIWRHQRPGDAVALNADSPIIRAM-AVVEQRPDDVVWFASAAHPALAHAGR 258

Query: 263 WKQCSEQSWMEVQLQGKSM----EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +    +G              G H   N+              D   +A+ 
Sbjct: 259 AAFWQGDELVWRDHRGGRHVICTRDDVQLRGTHNLGNIAAATAAACSFGVAPDHIRRAVQ 318

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   E    R            ++++    P +  AA+              + + G  
Sbjct: 319 TFPGVE---HRLELVRELDGVRYVNDTAATAPEAAIAALRTFDD-------PIVLIAG-- 366

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLF 434
              G   Q    DLA  ++    + V + G     L+ AL    P        +  +   
Sbjct: 367 ---GADKQLPFDDLAREIAGRVKAVVLVDGTATPKLQRALRLVDPSVDVCGPFDDFERAV 423

Query: 435 LFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
           +  +     GD+V++    +S             F R++ 
Sbjct: 424 IAARHIAAPGDIVLLSPGCASFGMFRNEFHRGEAFRRIVE 463


>gi|312196220|ref|YP_004016281.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Frankia sp. EuI1c]
 gi|311227556|gb|ADP80411.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Frankia sp. EuI1c]
          Length = 502

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 127/385 (32%), Gaps = 53/385 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++ +  R+R  A  +AITG+ GKTTT EML   L++  +  A  G+    +   +T A 
Sbjct: 115 GEIELGWRIRPAARWLAITGTNGKTTTTEMLGAILTAAGRRAATAGNIGTPV---VTAAL 171

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D    EL    L      T    P  A I  +AP HL    G +  A+ KA I+ 
Sbjct: 172 AEPPYDTLAVELSSFQL----HYTETAVPVAAAILNVAPDHLDWHGGPDGYAADKARIW- 226

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRK------------ 262
            +        N DD     L A +    +    +FG     A+  +              
Sbjct: 227 -MHPATIAVGNADDPGSAALLAAAPGRRV----TFGLDPATAEVTVVDGWLVDRAFGGGP 281

Query: 263 ---WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                        +   QG S +    G G H+  N L    +      +      AL+ 
Sbjct: 282 LVAVADLLAGPRPDGSAQGGSAQGA-PGPGRHLVANALAAAALARADGVEPAAIASALAA 340

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDM 378
           +        R            +D+S   NP +  A+++    +     G  +     ++
Sbjct: 341 Y---RPGAHRNALVTTVDGVRYVDDSKATNPHAAAASLTAYPSVVWIAGGLNKGLAFDEL 397

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFL 435
            E+               +   +  V L G     +  AL R    + +  +  MD    
Sbjct: 398 VEL---------------AAGRLRAVVLIGRCADEIAAALARHAPDVPMERAAGMDDAVE 442

Query: 436 FIQSSLVDGDVVVV-KSSNSCGFYR 459
                   GD V++  ++ S   +R
Sbjct: 443 AAARLARAGDTVLLAPAAASMDMFR 467


>gi|284928909|ref|YP_003421431.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [cyanobacterium
           UCYN-A]
 gi|284809368|gb|ADB95073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [cyanobacterium
           UCYN-A]
          Length = 418

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 104/311 (33%), Gaps = 37/311 (11%)

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              +G+  + + +         + D+ I E+           +  +RP I + T+  P H
Sbjct: 138 CGNVGNAASELALSKLKNPSIPNYDWIITEVSSYQC----ESSQTIRPTIGIWTSFTPDH 193

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           LS    +    S KA +   L+      LN DD++   + + S      T     +    
Sbjct: 194 LSRHKTLHNYYSIKASL---LKNCKYQILNNDDNYLHTISSHSWPNAYWTTIKGKEDLPC 250

Query: 257 D----FQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           D      ++  W     +    + L            G H  QN+LM +    I   D  
Sbjct: 251 DPIKGVYVQDGWIVAFGELMFPINL--------FKVAGLHNQQNLLMAVAAAKIAGIDKK 302

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               A+  F        R    ++      I++S   N  +  AA+ ++S  SP      
Sbjct: 303 DISLAVENFDGVP---HRLEYVVSIDDIQFINDSKATNYDA--AAMGLISVESPA----- 352

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I + G   + G  S+         L    +S V L G     + + L  S   +  E ++
Sbjct: 353 ILIAGGQSKEGNDSEW------IKLIKSQVSKVLLIGESASFIAERL-ESFSYYNYEIVE 405

Query: 432 GLFLFIQSSLV 442
            + + ++    
Sbjct: 406 EMDVAVRKKFQ 416


>gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
 gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
          Length = 479

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 122/402 (30%), Gaps = 44/402 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G  +VV +  +      L+        V   +          + A  + +TG+ GKTTT
Sbjct: 77  AGVEVVVTSPGIPPHAPLLAAAAERDVPVWSEIELAWRLRDPANAAPWLCVTGTNGKTTT 136

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +MLT  L++        G+    +   +     P   D    EL    L      TH +
Sbjct: 137 VQMLTAMLTAAGHRAVAAGNVGLPLLEAVM---DPEPYDVIAVELSSYQL----HFTHSM 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
             H A +  +AP H+     +E  A+ K  IFE  +       N  D+  E L  ++  +
Sbjct: 190 SAHSAAVLNLAPDHVDWHGSLEAYAADKGRIFENCQV--ACVYNVADAATEKLVEQADVV 247

Query: 243 GIKTIYSFGKSKNA-------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  F             D  L       +++   ++L   +          H   N
Sbjct: 248 EGCRAIGFTLGTPGLSMLGLVDEYLVDRAFVEQRATSALEL---ATLADITPPAPHNVAN 304

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +              L  F        R            +D+S   NP + +A
Sbjct: 305 ALAAAALARAFGVPATAVRDGLRGF---RPDAHRIAHVAEVAAVNYVDDSKATNPHAAQA 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++     +     G+                +F   +    +   +  V L G     + 
Sbjct: 362 SLLAYEHVVWIAGGQ------------AKGATFDELV--TAARSRLRGVVLLGQDKAVIA 407

Query: 416 DALPRS------IHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
            AL R       I V  ++T  M+ +          GD V++
Sbjct: 408 QALARHAPDVPVITVEATDTGAMETVVGEAAKLAQVGDTVLL 449


>gi|171060647|ref|YP_001792996.1| UDP-N-acetylmuramate [Leptothrix cholodnii SP-6]
 gi|170778092|gb|ACB36231.1| UDP-N-acetylmuramate [Leptothrix cholodnii SP-6]
          Length = 480

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 127/403 (31%), Gaps = 49/403 (12%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157
            +A  +     ++A+ G+ GKTTT  ML   L +        +G    + GV   L R+ 
Sbjct: 94  WLAEHVLQGRHVLAVAGTHGKTTTTSMLAWILEAAGLQPGFLVGGVPQNFGVSARLGRIG 153

Query: 158 VDVDFG------------------------IFELGMSHLGEIRFLTHLV--RPHIAVITT 191
                G                        + E            +  V  RP  A++  
Sbjct: 154 RPSAAGPSQGASAPAGGSEAHAVASVGAPFVIEADEYDTAFFDKRSKFVHYRPRTAILNN 213

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H   F+ +  I +    +   +   G + +N  +     +  +        ++ FG
Sbjct: 214 LEYDHADIFADLAAIETQFHHLVRTVPAKGRLVVNQREDSLRRVLERG---CWSEVHYFG 270

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             K     LR   +      +   L+   +E     +G H   N L  +     +     
Sbjct: 271 ARKETPGALRSRGEPHAFDVLRGSLKVARVEW--GLLGEHNQLNALAAIAAAEHVGVSPA 328

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A  AL  F       +R           + D+ +  +P ++   ++ L      G  R 
Sbjct: 329 DAGAALGRFENVR---RRLELRGEASGVKVYDD-FAHHPTAIHTTVNGLR--RKVGVARI 382

Query: 372 IAVL----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           +AV       M  +G ++          L   ++S     G    A    +P        
Sbjct: 383 LAVFEPRSNTMK-LGTMASQLPW----ALEEADLSFCHSGGLGWDAAAALVPLGEQAQVH 437

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           ++++ L   +  +   GD ++   SN  GF  +   LLE   A
Sbjct: 438 DSIERLVAAVVRAARPGDHILCM-SNG-GFGGVHAKLLEALAA 478


>gi|254208159|ref|ZP_04914509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei JHU]
 gi|147752053|gb|EDK59120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           mallei JHU]
          Length = 508

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 128/403 (31%), Gaps = 56/403 (13%)

Query: 77  SIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +     IPV+G ++    AL  L           +IAITG+ GKTTT  +  +      K
Sbjct: 97  AARERGIPVWGELEFFAQALAALGANGYA---PKVIAITGTNGKTTTTSLAGLLCERAGK 153

Query: 136 TYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
             A  G+ +  +   LT A       D  + EL    L       H   P  A I  I  
Sbjct: 154 KVAVAGNISPAMLDKLTEAIDAAALPDVWVLELSSFQLD----TAHTFAPDAATILNITQ 209

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL    G    A+AK  +F          LN DD+        + A       +FG ++
Sbjct: 210 DHLDWHGGFAAYAAAKGRVF---GPRTVRVLNRDDAEVMRFAPPAAAADAPRAVTFGLNE 266

Query: 255 NA---DFQL------------------------RKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            A   D+ L                         + ++    +  ++ L+          
Sbjct: 267 PAADGDYGLLRENGIAWLVEAIDRDGADAPAAPSRRRKQEAANPPDIALKRLMPADALRI 326

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N L    +   +       +          G   R            +D+S  
Sbjct: 327 RGLHNAANALAAYALARAIGLPAAPLLHG---LREYRGEPHRVEVIATLDGVDYVDDSKG 383

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  AA+  L+Q +    G      GD    G+  +     +A          V L 
Sbjct: 384 TNVGATVAALDGLAQRAVLIAG------GDGK--GQDFEPLAAPVARWCRA-----VMLI 430

Query: 408 GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G    AL++AL    + +    T++       +    GD V++
Sbjct: 431 GRDAPALREALADTGVPLADHATLEAAVRAASALAQPGDAVLL 473


>gi|145296122|ref|YP_001138943.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum R]
 gi|140846042|dbj|BAF55041.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 472

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 45/365 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L  A       T +A+TG+ GKTTT  ML   ++        +G+    +   L    
Sbjct: 106 WRLDQAGVFGEPHTWLAVTGTNGKTTTTSMLAAMMNEGGFAAKAVGNIGIPVSEALV--- 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               +D  + EL    L      +    P   V+  +A  H+     + + A AK E+  
Sbjct: 163 AKNRIDVLVAELSSFQL----HWSPTFTPDAGVVLNLAEDHIDWHGSMRDYALAKMEVL- 217

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSW 271
              K     +  DD +   L +++   G+     F  ++ A      +  +    +  + 
Sbjct: 218 ---KGKVAIIGADDPYLVQLTSEADLSGL---IGFTVNEPATGQLGVKAGELVDNAYGNN 271

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + +           +  G     + L    +        +   +AL  F   E  G R +
Sbjct: 272 VVLASADG-----INPAGPAGVLDALAAAAVARSQGVAPEAIARALDSF---EVAGHRGQ 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFH 389
                     ID S   NP +  +A++    +        I V+G   +  +++     H
Sbjct: 324 VVAEHDGVHFIDNSKATNPHAADSALAGHDSV--------IWVVGGQLKGADIAPLVKKH 375

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDG 444
               +   +       +      ALK+  P++           E M+ +     S    G
Sbjct: 376 EQRIKAALVLGADRAEIV----AALKEHAPQASVFVTDKTEPFEAMEEIVTEAFSISEPG 431

Query: 445 DVVVV 449
           D V++
Sbjct: 432 DTVLL 436


>gi|319408826|emb|CBI82483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           schoenbuchensis R1]
          Length = 468

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 89/275 (32%), Gaps = 19/275 (6%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V    + L            IAITG+ GK+TT  +L   L  +       G+    I   
Sbjct: 104 VRARNHFLRQHGFCDQDVPFIAITGTNGKSTTTTLLAHLLDKMGYDVQMGGNIGTAIL-- 161

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
               +  V     + E     +     L+  ++P + ++  + P H+         A  K
Sbjct: 162 --TLKPFVKKRIYVIECSSFQID----LSPSLQPTVGLLLNLTPDHIDRHGSFTHYAQVK 215

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSE 268
             +   + K     ++ DD+  ++L  +    G + + +  K    D  F     K  S 
Sbjct: 216 GRL---VSKASHALVSVDDAACQVLYQQLVNKGHQ-VKAISKEHCIDDGFYAEGTKLFSI 271

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                  L    +  +    G H  QN LM L  + +L                  G   
Sbjct: 272 SHGQRCLLAD--LATITSLRGAHNVQNALMVLATLQVLKITDPHI---EKHLASYMGLAH 326

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           R +     G    I++S   N  +   A++  + I
Sbjct: 327 RMQQVRKMGSVLFINDSKATNAEASACALATFNDI 361


>gi|300868200|ref|ZP_07112832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillatoria sp.
           PCC 6506]
 gi|300333824|emb|CBN58016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillatoria sp.
           PCC 6506]
          Length = 449

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 130/364 (35%), Gaps = 43/364 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A R       I ITG+ GKTTT  ++     +        G+          LA
Sbjct: 91  IGEVELAWRHLQSQPWIGITGTNGKTTTTALIAAIFQTAGFYAPACGNIG---YAACELA 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D+ I E+    +      +  + P I++ TT  P HLS    +E   + KA + 
Sbjct: 148 LGEKPPDWVIAEMSSYQI----ESSPSIAPRISIWTTFTPDHLSRHKTLENYYNIKAHL- 202

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME- 273
             L+++    +N DD +   L+ K      K  ++    K            +  +++E 
Sbjct: 203 --LKQSELQVINGDDPY---LREKGVESWPKACWTSVNGK-----AELLGDPARGAYIED 252

Query: 274 ---VQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              + L  K +       +G H  QN+LM +    +   + D   +A++ F    G   R
Sbjct: 253 GWAIALGEKILPVDSLRMVGSHNQQNLLMAVATARLAGIEKDAIAQAITNF---PGVSHR 309

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  + +  ++ ++  +    G      G+  E  +++    
Sbjct: 310 LEHIRTWAGIDFINDSKATNYDAAEVGLASVATPAILIAG------GEAKEGDDIAWIE- 362

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGD-- 445
                       + V L G         L ++ + ++   ETM+           + +  
Sbjct: 363 ------TIQAKAAAVLLIGNAADTFAKRLQQANYNNWEIVETMERAVSRSSELAKEHNAK 416

Query: 446 VVVV 449
           VV++
Sbjct: 417 VVLL 420


>gi|213966437|ref|ZP_03394614.1| mur ligase family protein [Corynebacterium amycolatum SK46]
 gi|213950930|gb|EEB62335.1| mur ligase family protein [Corynebacterium amycolatum SK46]
          Length = 449

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 92/281 (32%), Gaps = 37/281 (13%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GK+TT  M   A+ +     A     +N     ++      D D  + E+   H+
Sbjct: 75  ITGTNGKSTTTRMFAAAMRADGHNVATNEGGDNMDAGIISALLATPDADSLVLEVDELHV 134

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             I      ++P + V+  ++   L     I +I  A            T+  N DD   
Sbjct: 135 PHIA---EDLKPQVLVLLNLSRDQLDRVGEINKI-EATLRAAVDANPQATVIANCDDP-- 188

Query: 233 ELLKAKSHALGIKTIY-SFGKSKNADFQLR---------------KWKQCSEQSWME--- 273
             L A +     K I+ S G     D                     K   + S  +   
Sbjct: 189 --LIASAAWDAKKVIWVSAGGGWTNDATSSPRTGGPIIQDGHNWYAVKPLPDGSEFKRPE 246

Query: 274 ----------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                     +   G ++ +     G     N  + +     + AD++ +++A       
Sbjct: 247 PDYRITAEGVITPAGDTLPMNLTLPGNANRGNATLAIAGAVDMGADLEKSLRATETVDNV 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            GR        ++G    +      NPA  + A+S++ + +
Sbjct: 307 AGRYSTMVVRDDKGGEKHVRMLLAKNPAGWQEALSMVDRTA 347


>gi|109892755|sp|Q5GTG5|MURC_WOLTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 536

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 94/429 (21%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++  + A +     +IA++GS GKTTT  M+         T A +      I       
Sbjct: 113 LHRSGILAEIMKDKYVIAVSGSSGKTTTTAMIASIFDHS-NTDATV--IVGGILNSYQNN 169

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E   S    ++     +  +IAVIT+I   H+ ++   + I +A ++  
Sbjct: 170 SKLGKSDILLIEADESDETMLK-----IPANIAVITSINNDHIDHYGTFDNIKNAFSQFI 224

Query: 215 EGLEKTGTIFLNY-----DDSFFEL---------------LKAKSHALGIKTIYSFGKS- 253
                     L       D     +                    H +GIK   S   S 
Sbjct: 225 N---SADFAILPDSVGINDSESVSIKFGFEGVYPFVIQSPFVVPVHDIGIKKKKSASCSI 281

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---------------------------- 285
           K ++ +    +Q +     +V + G S++  H                            
Sbjct: 282 KASNVKANNIRQHNNSIEFDVLIDGCSIDRSHWIPASCTETTAVLPLSSTQITSLRSRII 341

Query: 286 ------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                 + IG H   N L  + +   L  +     K L  F   +G  +R+    +    
Sbjct: 342 KNVVLSNAIGMHKVSNALAAISVAIKLGINDVDIKKGLLEF---KGVARRFSLVADIKDV 398

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLS 397
            LI++ Y  +P+ ++A ++    I+               E    +  ++F  +   +  
Sbjct: 399 KLIED-YAHHPSEIQATLTAARSITKGKIIGI-------IEPFRFARIRNFFDEFIRIFM 450

Query: 398 LYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDG 444
           +    +V L            G  +  +++AL  +   +     D L    FI  S   G
Sbjct: 451 M--FDYVILVPVHPPEDKPILGCRIDDIQEALISNGFNNVKIMNDALLISNFISDSTNSG 508

Query: 445 DVVVVKSSN 453
           D+V+   + 
Sbjct: 509 DIVLFIGAG 517


>gi|332292572|ref|YP_004431181.1| Mur ligase middle domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170658|gb|AEE19913.1| Mur ligase middle domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 450

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 121/372 (32%), Gaps = 42/372 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    T + I GS GKTT   M+   +    K    +      +    T+ RM  D
Sbjct: 95  YLYERAKNKTRVVIGGSHGKTTITSMILHVMHYWDKEVDYM--VGAQLEGFDTMVRMTDD 152

Query: 160 VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            DF + E        I      HL +P+IA+++ IA  H++ F   +            +
Sbjct: 153 ADFMVLEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFDNYVEQFQIFVNSM 212

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G +  N +D     +   + A   K  Y     +   + +   +   E         
Sbjct: 213 TNGGAMIYNTEDENVVKVVENATAHIKKYPY-----ETPTYSIEDGETLLETP------- 260

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                +     G H   N+     I   +    +   +A++ F    G  KR        
Sbjct: 261 --DGPMPIEVFGKHNLNNLAGAKWICQHMGVVEEDFYEAIATFS---GASKRLEKIAETN 315

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHIDLAE 394
             T+I + +  +P+ + A  + + +  P      IA L    E+   S     F  +   
Sbjct: 316 D-TVIYKDFAHSPSKVSATTTAVKEQYPDRT--LIACL----ELHTYSSLNPEFLSEYKG 368

Query: 395 VLSLYNISHVW----------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            L   +I+ V+          L       +  A  R   + Y++  D    F+    +  
Sbjct: 369 ALDSADIAVVFYSPHAVEIKKLESVTAQQIATAFERDDLIIYTDPAD-FKKFLFDQGLKN 427

Query: 445 DVVVVKSSNSCG 456
             V++ SS + G
Sbjct: 428 KAVLLMSSGNYG 439


>gi|257066478|ref|YP_003152734.1| hypothetical protein Apre_0985 [Anaerococcus prevotii DSM 20548]
 gi|256798358|gb|ACV29013.1| domain of unknown function DUF1727 [Anaerococcus prevotii DSM
           20548]
          Length = 443

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 125/396 (31%), Gaps = 64/396 (16%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVD 161
           L      I +TG+ GKT T   LT  L    +      S +N +   +T  L   P +  
Sbjct: 45  LSKNTKFIFVTGTNGKTMTTHFLTNILRQHYENVFTNDSGSNMVQGIITSLLDNPPNEDT 104

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--K 219
             + E+  ++L  I      ++    V T +    +  F  I  I     ++ EG+E   
Sbjct: 105 VAVLEVDEANLSRI---GKFLKADYVVFTNVFRDQMDRFGEIYNIFD---KMMEGMEEMP 158

Query: 220 TGTIFLNYD---------DSFFELLKAKSHALGIKTIYSFGKSKNAD------------F 258
             TI  N D         DS+ ++         +   YS     N+D            +
Sbjct: 159 DATIVANGDLPIFAYDKMDSYKKVYYGIRDKRDVHEDYSLDAELNSDGILCPKCNSVLKY 218

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----------------------GYHMAQNM 296
           +L  +    + +        K ++     +                      G +   N 
Sbjct: 219 RLVNYSSLGDFTCPSCDFSSKKLKYCIDNLEKLESDHSTFKIANEEYEISVGGLYNIYNA 278

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L +L +   L    +   + L       GR +  + A       L+      NP  +   
Sbjct: 279 LASLAVAKELGLTYEEIYRGLKSQKNVFGRQENIKIADKNVIINLVK-----NPTGLNQI 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I ++  +    +   + +L D    G      +    E L   +I  V++SG     +K 
Sbjct: 334 IELM--LLNKSDISLVCLLNDNYADGLDVSWIYDSHYEKLKEMDIKDVYVSGKRSSDMKR 391

Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVV 448
            L  +      +   +    +   I+++  D   ++
Sbjct: 392 RLEIAEIYEGDIKEFDYEKEIVDVIENAKTDNVYIL 427


>gi|297566095|ref|YP_003685067.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Meiothermus
           silvanus DSM 9946]
 gi|296850544|gb|ADH63559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Meiothermus
           silvanus DSM 9946]
          Length = 423

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 111/344 (32%), Gaps = 62/344 (18%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           A   +K  I+ ITG+ GK T        L ++       G+ +        L  +    +
Sbjct: 93  AYRSAKTPIVGITGTAGKGTATLATAHFLRALGFKALEGGNLDPP------LLDIIEQAE 146

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     + H  RP +AV+  +   HL     +E   +AK  +   L    
Sbjct: 147 VAVAELSSFQL---ERVVHF-RPRVAVLLNLGVDHLDRHHTLETYHAAKLNLIRNLTAED 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N +D   ++++A  H+   K    +      + +    +   E +     + GK+ 
Sbjct: 203 ALVYNAEDP--KIVQAILHSPARK----YPFHPATNPRQTNLRAAREAAKAYASIAGKAG 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +                           +D A K             R+    ++G    
Sbjct: 257 DERV------------------------LDEAEKTAPRLPG------RFDTFAHKGDVVF 286

Query: 342 IDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ID+S      ++KAA+      I+    GR         + G  ++     +AE + +  
Sbjct: 287 IDDSIATRYDAVKAALQAAPAPIAWILGGR---------DKGAPTEGLERIVAERVRV-- 335

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              +   G     +  A      +   +   G    ++ ++ +G
Sbjct: 336 ---ILAIGEDGPRMAQAFRGYTELVNIQEPSG-EATLRKAVQEG 375


>gi|15836434|ref|NP_300958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae J138]
 gi|8979275|dbj|BAA99109.1| muramoylalanine-glutamate ligase [Chlamydophila pneumoniae J138]
          Length = 417

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 116/380 (30%), Gaps = 65/380 (17%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V    SL IPV  V D+  AL                 ITGS GKTTT   LT  L
Sbjct: 71  YHPWVEQAVSLKIPV--VTDIQVALKTPEFQRYPSF-----GITGSNGKTTTTLFLTHLL 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +++      +G+    I                + E+    L         +    +V  
Sbjct: 124 NTLGIPAIAMGNIGLPI------LDHMGQPGVRVVEISSFQLATQEEHVPALS--GSVFL 175

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
             +  HL     ++    AK  I + L +  T ++            +        IYS 
Sbjct: 176 NFSRNHLDYHRNLDAYFDAKLRIQKCLRQDKTFWVW----------EECSLGNSYQIYS- 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-AD 309
                      + ++  ++                  I  H   N      + + +    
Sbjct: 225 ----------EEIEEILDKG------------DALKPIYLHDRDNYCAAYALANEVGWVS 262

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  +KA+  F        R      +     I++S      +++ A+  +         
Sbjct: 263 PEGFLKAIRTFEKPA---HRLEYLGKKDGVHYINDSKATTVTAVEKALMAV-------GK 312

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             I +LG   + G+        LA VLS     HV   G     + DAL   I +  S+ 
Sbjct: 313 DVIVILGGKDKGGDFPA-----LASVLSQT-TKHVIAMGECRQTIADALSEKIPLTLSKD 366

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +       Q+   +GD V++
Sbjct: 367 LQEAVSIAQTIAQEGDTVLL 386


>gi|58584378|ref|YP_197951.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418694|gb|AAW70709.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 556

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 94/429 (21%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L++  + A +     +IA++GS GKTTT  M+         T A +      I       
Sbjct: 133 LHRSGILAEIMKDKYVIAVSGSSGKTTTTAMIASIFDHS-NTDATV--IVGGILNSYQNN 189

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + E   S    ++     +  +IAVIT+I   H+ ++   + I +A ++  
Sbjct: 190 SKLGKSDILLIEADESDETMLK-----IPANIAVITSINNDHIDHYGTFDNIKNAFSQFI 244

Query: 215 EGLEKTGTIFLNY-----DDSFFEL---------------LKAKSHALGIKTIYSFGKS- 253
                     L       D     +                    H +GIK   S   S 
Sbjct: 245 N---SADFAILPDSVGINDSESVSIKFGFEGVYPFVIQSPFVVPVHDIGIKKKKSASCSI 301

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---------------------------- 285
           K ++ +    +Q +     +V + G S++  H                            
Sbjct: 302 KASNVKANNIRQHNNSIEFDVLIDGCSIDRSHWIPASCTETTAVLPLSSTQITSLRSRII 361

Query: 286 ------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                 + IG H   N L  + +   L  +     K L  F   +G  +R+    +    
Sbjct: 362 KNVVLSNAIGMHKVSNALAAISVAIKLGINDVDIKKGLLEF---KGVARRFSLVADIKDV 418

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLAEVLS 397
            LI++ Y  +P+ ++A ++    I+               E    +  ++F  +   +  
Sbjct: 419 KLIED-YAHHPSEIQATLTAARSITKGKIIGI-------IEPFRFARIRNFFDEFIRIFM 470

Query: 398 LYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDG 444
           +    +V L            G  +  +++AL  +   +     D L    FI  S   G
Sbjct: 471 M--FDYVILVPVHPPEDKPILGCRIDDIQEALISNGFNNVKIMNDALLISNFISDSTNSG 528

Query: 445 DVVVVKSSN 453
           D+V+   + 
Sbjct: 529 DIVLFIGAG 537


>gi|292669645|ref|ZP_06603071.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas
           noxia ATCC 43541]
 gi|292648442|gb|EFF66414.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas
           noxia ATCC 43541]
          Length = 460

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 98/319 (30%), Gaps = 26/319 (8%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           + +        +IGVPL      +  D  I     S+  ++   TH   P +A    + P
Sbjct: 137 RAHFSAVGVGGNIGVPLIDVAQEIPADGAIAAEISSY--QMEATTHF-HPAVAAELNVTP 193

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H+     +E   + K ++F        + LNYDD     +  ++             S+
Sbjct: 194 DHIVRHGSMEVYQAMKEKLFAAQTHEDFLVLNYDDPHTRGMAERAAGHVCFFSRRTELSE 253

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            A  +              V +  +         G H  +N L    +  +       A 
Sbjct: 254 GATVRADGMIVMRWDGAEHVLIPVRE----LGIPGGHNVENALAASAMALLAGVTPAEAR 309

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
             L  F   E    R             ++S   N  S   A+          +G  + +
Sbjct: 310 PVLRSFKGVE---HRIEFVRTLDGVNYYNDSKATNTDSAIKALEAF-------DGHIVLI 359

Query: 375 LGDMCEMGELSQSF---HIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETM 430
            G   ++ +L++     H  + E++ + + +  + +      L K  + R+ +      M
Sbjct: 360 AGGDDKLTDLTEFMELVHARVDELILIGDAAARFAAAAEGAGLSKQHIRRAGY-----NM 414

Query: 431 DGLFLFIQSSLVDGDVVVV 449
                        G  V++
Sbjct: 415 AAAVQAAHDLAAKGQTVLL 433


>gi|16330482|ref|NP_441210.1| cyanophycin synthetase [Synechocystis sp. PCC 6803]
 gi|8134384|sp|P73833|CPHA_SYNY3 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|1652973|dbj|BAA17890.1| slr2002 [Synechocystis sp. PCC 6803]
          Length = 873

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 38/326 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------VPLTLAR 155
           S+  I+A+TG+ GKTTT  +L        KT     +   +I            P + A 
Sbjct: 486 SRIPILAVTGTNGKTTTTRLLAHIYRQTGKTVGYTSTDAIYINEYCVEKGDNTGPQSAAV 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEI 213
           +  D    +  L  +  G +R         + V+  +A  HL   +   IE++A  K+ I
Sbjct: 546 ILRDPTVEVAVLETARGGILRAGLAFDTCDVGVVLNVAADHLGLGDIDTIEQMAKVKSVI 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-------------ADFQL 260
            E ++ +G   LN DD     +  K  A     +  F  + +             A    
Sbjct: 606 AEVVDPSGYAVLNADDPLVAAMADKVKA----KVAYFSMNPDNPVIQNHIRRNGIAAVYE 661

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             +    E SW     +   + +   G+   M  N L       +   DV+   + +  F
Sbjct: 662 SGYVSILEGSWTLRVEEATLIPMTMGGMAPFMIANALAACLAAFVNGLDVEVIRQGVRTF 721

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                +        N G +  + + Y  NPA  +A    +     +  G+R  V+G    
Sbjct: 722 TTSAEQTPGRMNLFNLGRYHALVD-YAHNPAGYRAVGDFVK----NWHGQRFGVVGGP-- 774

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWL 406
            G+   S  I+L ++ +      + +
Sbjct: 775 -GDRRDSDLIELGQIAAQV-FDRIIV 798


>gi|242308785|ref|ZP_04807940.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
 gi|239524678|gb|EEQ64544.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
          Length = 230

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 28/248 (11%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S    ++     +   + ++T I   HL     +E   + K   F          +N
Sbjct: 1   MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATKNSFFA--TPKDEKLIN 58

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D         K+    ++   ++G   NA F ++ +         ++    +   +  +
Sbjct: 59  KD--------EKNAQYSLQNTMTYGIESNATFHIKAYSLKG-GITAQIAYGKEEAMLNAY 109

Query: 287 GIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             G H   N L  +G V ILT   +      L  F    GR +            LI   
Sbjct: 110 LFGKHNLYNALAAIGAVKILTKSPLQMIADKLENFGGVLGRMQVV------NEKPLIIVD 163

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +      M+               ++I V+      G+  ++    +    S Y  S ++
Sbjct: 164 FAHTQDGMEQVFQSFLH-------QKIVVI--FGAGGDRDKTKRPKMGYCASKY-ASKIY 213

Query: 406 LSGFHVLA 413
           ++  +  +
Sbjct: 214 ITSDNPRS 221


>gi|219684279|ref|ZP_03539223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
 gi|219672268|gb|EED29321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
          Length = 451

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 123/377 (32%), Gaps = 55/377 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIA+TG+ GK+T   +L   L          G+       PL+           I E
Sbjct: 110 KNPIIAVTGTKGKSTLVSLLYQVLKKKYPRAKLGGNIGIS---PLSFFDQLDGRSPLILE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  +        P +++IT +   H + +   ++    K++IF     +G   + 
Sbjct: 167 LSSWQLQSLENF----NPILSIITNVYNDHQNYYLNFDDYIIDKSKIFVNQT-SGIAII- 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D ++++     S       +  F +               +Q           +    +
Sbjct: 221 QDKAYYKYF---SKFESKAKVILFSEFNP---------LVLDQDVF--YYNKGEVYFNDN 266

Query: 287 GIGYHMAQNM------LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            IG      +      L+   +   L  D++   K L+ F   E R +  +   N     
Sbjct: 267 LIGSFSESQVVFMIPKLIAFFVSYYLNMDLNHTFKILNKFRGIEHRLEFVKLVQN---VM 323

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             +++ +  P S   ++  L             ++G     G   +       ++++L  
Sbjct: 324 FYNDTASTIPDSTVLSVKSLKTNDNSIN----LIVG-----GTDKELDFSSFCKIINLVK 374

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SS------ 452
            + + + G   + +   L + SI     +++     +       GD+V+   +S      
Sbjct: 375 -TWILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYASKISSPGDIVLFSPASASFELF 433

Query: 453 -----NSCGFYRLINLL 464
                    F  L+N+L
Sbjct: 434 NNEFDRGLQFKNLVNML 450


>gi|33322727|gb|AAQ07098.1|AF496410_1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl lig [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 109

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 43/93 (46%)

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   ++ + YN+NP ++KA  +   Q+     GRRIAVL DM E+G  S   H  L
Sbjct: 1   EKGDCGEXIMSDIYNSNPTAVKAVTAXFGQVPVSEGGRRIAVLADMLELGSRSADLHKGL 60

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           A  L    I+ ++L G  +  L  AL      H
Sbjct: 61  AACLDPDKINVLYLYGPEMNXLYQALXGKYDQH 93


>gi|332873288|ref|ZP_08441243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
 gi|332738494|gb|EGJ69366.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
          Length = 445

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 129/407 (31%), Gaps = 43/407 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V     +   +  +S P F  D VL                 ++ + G+
Sbjct: 55  VGNAMKRGIDAV--EYMLNEGLPYISGPQFLADHVLQ-------------GKHVLGVAGT 99

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +  + +       + + E          
Sbjct: 100 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 156

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 157 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +        +    S   ++ A           + S  +V   G  + EV     G H  
Sbjct: 217 VLEMGCWTPVIRT-SLEANEKATLSAELISI--DGSHFKVLENGNVVGEVKWSMTGQHSV 273

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L T+     +   ++ A +ALS F   +   +R           + D+ +  +P ++
Sbjct: 274 ANALATIAAAQHVGVSLEKACEALSNFGGVK---RRMELLGTINGIEVYDD-FAHHPTAI 329

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGFHV 411
              +         GE R  A++    E    +     H D     S      V       
Sbjct: 330 DTTLD--GARKRLGERRLWAII----EPRSNTMRMGSHKD-GLAHSARLADEVIWYQPEG 382

Query: 412 LALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L   D  P     + H   S ++D +   I +   +GD VV+  SN 
Sbjct: 383 LD-WDLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVIM-SNG 427


>gi|254421594|ref|ZP_05035312.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
 gi|196189083|gb|EDX84047.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
          Length = 925

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 110/323 (34%), Gaps = 47/323 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------L 153
           S+  I+AITG+ GKTTT  +       +        +   +IG  L             L
Sbjct: 484 SRIPIVAITGTNGKTTTTRLTAHIFRQVYSMVGYTTTDGIYIGNHLVEKGDTTGPQSARL 543

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211
                 V+  + E   +  G +R      +  + ++  +A  HL   +   I+++A  KA
Sbjct: 544 ILEDPTVEMAVLE--TARGGLLRSGLAFDQSDVGIVLNVAADHLGIGDIDTIDQLAKLKA 601

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-------------ADF 258
            + E +  +G + LN DD     +  +  A     +  F                  A  
Sbjct: 602 VVAESVAGSGYVVLNADDHRVAAMAERVKAA---KVAYFSMDSKNPLVRSHLANGGIAAV 658

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
               +    +Q W+   ++ + + +   G    M  N L       +    ++    AL 
Sbjct: 659 YEEGYLSIIQQDWLHRIIKAERVPLTMGGRAPFMIANALAASLAGFVQGVKIEQIRAALH 718

Query: 319 VFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG- 376
            F P   +   R        +  L+D  Y  NPA   A    +     +  G  I V+G 
Sbjct: 719 SFQPSASQIPGRMNLFDMGNYHALVD--YAHNPAGYAA----IGSFVKNWPGPAIGVVGA 772

Query: 377 -------DMCEMGELSQSFHIDL 392
                  D+ E+G+LS      +
Sbjct: 773 PGDRRDEDLIELGQLSVDIFDQV 795


>gi|78776956|ref|YP_393271.1| UDP-N-acetylmuramate--L-alanine ligase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497496|gb|ABB44036.1| UDP-N-acetylmuramate--L-alanine ligase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 437

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 117/336 (34%), Gaps = 34/336 (10%)

Query: 84  PVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P        G   L +     R+   + + ++ G+ GK+TT    T  LS+I    A IG
Sbjct: 74  PEIVEAKTRGIEVLARREALLRILDTSKVYSVAGAHGKSTT----TAILSAIMDGSAIIG 129

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + +   G  +   R     D  IFE   S    I        PH +++    P H+  + 
Sbjct: 130 AESKAFGSNV---RYDASSDIMIFEADESDGSFI-----NSNPHCSIVVNAEPEHMEYYD 181

Query: 202 -GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E    +     +         LN +D F   L  +  A      + +   +  + + 
Sbjct: 182 YNFELFYDSYKTFIKSAPCR---ILNAEDPFLSKLIGEIEAN-----WLYPSKEITELKF 233

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                    +   ++  G S +V   G G H+A +  + +   +    D++   + +  F
Sbjct: 234 VLIDDEPH-TRFTLRDLG-SFDVW--GFGKHIALDASLAILAANES-MDIELIREKILTF 288

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G  KR+     Q    +ID+ Y  +P  +KA    L + +      +I  +    +
Sbjct: 289 ---KGIKKRFDIVGAQSDRVIIDD-YGHHPTEIKATFESLKEYALLKGFDKITAIWQPHK 344

Query: 381 MGELSQSFHIDLA--EVLSLYNISHVWLSGFHVLAL 414
                 +    +   E  +   I  VW +G  +  +
Sbjct: 345 YSRTIDNLEEFIKCFEGAAELIILPVWPAGEAMREI 380


>gi|322804391|emb|CBZ01941.1| cyanophycin synthase [Clostridium botulinum H04402 065]
          Length = 873

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 50/380 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLTL 153
              II+ITG+ GKTTT  ++   LS   K      +   +I                 T+
Sbjct: 476 NIPIISITGTNGKTTTTRLIAHILSFSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTV 535

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                +V+  + EL     G IR         + +IT +   H  L   + +E++A  KA
Sbjct: 536 LT-NKEVEVAVLELA--RGGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA 592

Query: 212 EIFEGLEKTGTIFLNYDDS----FFELLKAK----SHALGIKTIYSFGKSKNADFQLRKW 263
            + E ++K G + +N DD         +K+K    +       I  +  +KN    L + 
Sbjct: 593 LVGEAVKKDGYVVINADDEASISIINRMKSKIILFTKNKNNPIISQYLDNKNLVLYLDED 652

Query: 264 KQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++ +  E  +    + +   G   +  +N +  +  +  L  DV+T  + L  F  
Sbjct: 653 TIYLKKLNKNEEIINVNKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSN 712

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
           +E    R+      G   ++D  Y  N    K  +  + +I+     R I V+G     G
Sbjct: 713 EEQNPGRFNMYNVHGTNVILD--YGHNIEGYKVVLESIKKIN---HKRIIGVVGVP---G 764

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETMDGLFL 435
           + + S  + +  +    +  +V++       G     + D L + I    +  +   + L
Sbjct: 765 DRTNSSTLKVGNICGE-SFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKLNIIL 823

Query: 436 FIQSSLV-------DGDVVV 448
             + +L         GD+V+
Sbjct: 824 DEEEALKKAIEFSNPGDLVI 843


>gi|294648722|ref|ZP_06726182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825397|gb|EFF84140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 453

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 127/406 (31%), Gaps = 41/406 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   +     +   +  +S P F  D VL                 ++ + G+
Sbjct: 67  VGNAMKRGIDAI--EYMLNEGLPYISGPQFLTDHVLQ-------------GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +  + +       +   E          
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETNIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           +  +        +       N    L      ++ S  +V   GK + EV     G H  
Sbjct: 229 VLEQG---CWTPVVRTSLEPNDQAALSAELISADGSHFKVLENGKVIGEVKWSMTGQHSV 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L T+     +   ++ A +ALS F   +   +R           + D+ +  +P ++
Sbjct: 286 ANALATIAAAQHVGVSIEQACEALSNFGGVK---RRMELLGKVRGIEVYDD-FAHHPTAI 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS---G 408
           +  +         GE +  A++    E    +     H D     S      V      G
Sbjct: 342 ETTLD--GARKRLGERKLWAII----EPRSNTMRMGSHKD-GLAHSARLADEVIWYQPEG 394

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                       S     S ++D +   + +   +GD VV+  SN 
Sbjct: 395 LDWDLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVIM-SNG 439


>gi|206561801|ref|YP_002232566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           cenocepacia J2315]
 gi|198037843|emb|CAR53787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           cenocepacia J2315]
          Length = 495

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 133/457 (29%), Gaps = 65/457 (14%)

Query: 33  DSRSIAPQEAFFAIKGPHYD----GHDFILHAVQKGAGLV--------VVNTDMVASIGS 80
           D+R   P     A++    D    G  F    +  G  +V        +          +
Sbjct: 29  DTREAPPH--LAALQAEGIDAEFVGGAFTPALLDGGVEIVGLSPGLSPLEPALAALLAAA 86

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V    ++      L        +  ++AITG+ GKTTT  +  +      K  A  
Sbjct: 87  HERGVAVWGELEFFAQALRALGTSGYQPKVLAITGTNGKTTTTSLTGLLCQRSGKKVAVA 146

Query: 141 GSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
           G+ +  +   L  A       D  + EL    L           P  A I  I   HL  
Sbjct: 147 GNISPAMLDRLASAIDDTALPDVWVLELSSFQL----ETARTFAPDAAAILNITQDHLDW 202

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NA 256
               +  A AK  IF       T  LN DD+        + A       +FG ++   + 
Sbjct: 203 HGSFDAYAQAKGRIFGATT---TRVLNRDDAAVMKFAPVAGAADAPRTVTFGLNEPTQDG 259

Query: 257 DF------------QLRKWKQCSEQSWMEVQLQGKSMEV-----------VHHGIGYHMA 293
           D+            +        E +    + +  +                   G H A
Sbjct: 260 DYGLSRDNGIAWLVEAVDRDAPDEATTTRRRKRDAAHTPDIAQKRLMPADALRIRGLHNA 319

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +   +       + A        G   R            +D+S   N  + 
Sbjct: 320 ANALAAFALARAIDLPAAPLLHA---LREYRGEAHRVEVIATIDDVDYVDDSKGTNVGAT 376

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AA+  L+Q       + + + G   +  + +      +A          V L G    A
Sbjct: 377 VAALDGLAQ-------KIVLIAGGDGKGQDFAP-LVAPVARWCRA-----VMLIGRDAPA 423

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++D L    + +    T++G           GD V++
Sbjct: 424 IRDTLAETGVPLVDHATLEGAVHAAADLAEPGDAVLL 460


>gi|210634246|ref|ZP_03298044.1| hypothetical protein COLSTE_01966 [Collinsella stercoris DSM 13279]
 gi|210158882|gb|EEA89853.1| hypothetical protein COLSTE_01966 [Collinsella stercoris DSM 13279]
          Length = 263

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + +   A RL  +    AITG+ GKTT   +    L +       +G+        +   
Sbjct: 98  MGEPEFAWRLSPE-RWCAITGTNGKTTVTSLTNELLRASGLASVAVGNIG---NAAIHEV 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               + ++ + EL    +      T  + P +A++  I P HL+     E  A AK ++F
Sbjct: 154 DRRAEGEWFVAELSSYQIA----TTAELHPRVAILLNITPDHLAWHRTHENYALAKIDLF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
             ++++    +N +D        + +  G + +   G +          +
Sbjct: 210 RNMDESDLAIVNVEDEGIAAFADRVYVPG-RRVLKLGLADAGGAHAAFVR 258


>gi|156332874|ref|XP_001619308.1| hypothetical protein NEMVEDRAFT_v1g224310 [Nematostella vectensis]
 gi|156202258|gb|EDO27208.1| predicted protein [Nematostella vectensis]
          Length = 596

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 22/257 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           + A  I ITGS GKTTT  +    L          G+        +       + D  + 
Sbjct: 99  TTAKTIGITGSNGKTTTTLLTYHLLKQGGLNVGLAGNIGKSFAWQV----AENNHDVYVL 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224
           EL    L  I       +P IA+IT ++P HL  ++       ++K  I +   +   + 
Sbjct: 155 ELSSFQLDGI----INYKPDIAIITNLSPDHLDRYNYDYNLYIASKFRITKNQTEEEYLI 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           ++ +D   +     ++      I  F  ++       +     +++ +  ++  +   + 
Sbjct: 211 IDSEDVEIKKWLQNNNTKA--QIIPFSLTEE-----VEVGGFIKENNINSKINNEEFTMP 263

Query: 285 HH---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H  +N +    +  ++     T  ++LS F    G   R    L       
Sbjct: 264 INELALEGKHNLKNAMAATAVAQLMKIRKQTIRESLSNFQ---GAEHRLEKTLKIQNVQY 320

Query: 342 IDESYNANPASMKAAIS 358
           I++S   N  +   A+ 
Sbjct: 321 INDSXATNVNATFFALD 337


>gi|218248504|ref|YP_002373875.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 8801]
 gi|257061569|ref|YP_003139457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 8802]
 gi|226711906|sp|B7K318|MURD_CYAP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218168982|gb|ACK67719.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           8801]
 gi|256591735|gb|ACV02622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           8802]
          Length = 456

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 128/396 (32%), Gaps = 56/396 (14%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSYNNHIGVPL 151
           + +L +A R    +  + ITG+ GKTTT  ++     +      +   IG     + +  
Sbjct: 93  IGELELAWRSLQSSPWVGITGTNGKTTTTALVAAIFQASGLNAPSCGNIGYAACELALSQ 152

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T  +     D+ I E+    +   R L     P I + TT  P HLS    ++   + KA
Sbjct: 153 TKTKA-SSFDWIIAEVSSYQIESSRELA----PKIGIWTTFTPDHLSRHKTLDNYYAIKA 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-----FQLRKWKQC 266
            +    E       N DD +   +     A    T     +    D     +    W   
Sbjct: 208 SLLRRCELQ---IFNGDDPYLHQVGLHQWADAYWTTVKGKEHLLCDAAKGVYLQDNWIVA 264

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +    + L           +G H  QN+LM +G   +   +     +A++ F      
Sbjct: 265 FGELIAPLNL--------FKMVGVHNQQNLLMAVGAARLAGIEKGAIAQAIATFKGVP-- 314

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R     N      I++S   N  + +  +  ++          I + G   + G+  +
Sbjct: 315 -HRLELITNIDGIDFINDSKATNYDAAEVGLVSVNA-------SVILIAGGEAKEGDDRR 366

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDG 444
                 A+V        V L G    A    L +S +  Y   ETMD             
Sbjct: 367 WIEQIKAKVA------TVLLIGEAATAFAQRLQQSNYEAYEIVETMDNAVKRGLELAKKQ 420

Query: 445 --DVVVV---KSS---------NSCGFYRLINLLLE 466
              VV++    +S             F +L   L E
Sbjct: 421 QAKVVLLSPACASFDQYQSFEHRGDHFRQLCQALKE 456


>gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Herbaspirillum
           seropedicae SmR1]
 gi|300072461|gb|ADJ61860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 93/316 (29%), Gaps = 50/316 (15%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L      TH ++   A +  +   HL     +E  A+ KA IF      
Sbjct: 382 QAWVLELSSFQL----HTTHSLQADAATVLNLTQDHLDWHGSMEHYAADKARIFGQHT-- 435

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----------------ADFQLRKW 263
               LN DD+    + A   AL      +FG  +                  A+  + + 
Sbjct: 436 -VRVLNRDDALVMQMAAAGSALS-----TFGLDEPTAPNSFGLVNDNGMLWLANAFVHED 489

Query: 264 KQCSEQSWME---------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            +  E              V L+           G H A N L  L +   +   +   +
Sbjct: 490 DEVPEGKRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRAIDLPMAPLL 549

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                     G   R             D+S   N  +  AA++ L         R + +
Sbjct: 550 HG---LRDYTGEPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGL--GGRPNRIVLI 604

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGL 433
            G   +  + S        ++        V L G    A++ AL    + +    +++  
Sbjct: 605 AGGDGKGQDFSP------LDLPVQKYARAVLLIGRDAPAIRAALADSGVELIDCASLEAA 658

Query: 434 FLFIQSSLVDGDVVVV 449
                     GD+V++
Sbjct: 659 VEKAGEIATAGDIVLL 674


>gi|262374698|ref|ZP_06067970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter junii SH205]
 gi|262310354|gb|EEY91446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter junii SH205]
          Length = 453

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 130/406 (32%), Gaps = 41/406 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   +     +   +  +S P F  D VL                 ++ + G+
Sbjct: 67  VGNAMKRGIDAI--EYMLNEGLPYISGPQFLADHVLQ-------------GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +  + +       +   E          
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 177 FLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             +  V   P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETNIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293
           + A+        +       N    L      ++ S  +V   GK++ EV  +  G H  
Sbjct: 229 VLAQG---CWTPVVRTSLEPNDQAALSAELISADGSHFKVLENGKAIGEVKWNMTGQHSV 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L T+     +   ++ A +ALS F   +   +R           + D+ +  +P ++
Sbjct: 286 ANALATIAAAQHVGVSLEQACEALSNFGGVK---RRMELLGTVRGIEVYDD-FAHHPTAI 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS---G 408
           +  +         GE +  A++    E    +     H D     S      V      G
Sbjct: 342 ETTLD--GARKRLGERKLWAII----EPRSNTMRMGSHKD-GLAHSARLADEVIWYQPEG 394

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                       S     S ++D +   + +   +GD VV+  SN 
Sbjct: 395 LDWDLQPVISASSNKAEVSRSLDDIIARVVNEAGEGDAVVIM-SNG 439


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.142    0.387 

Lambda     K      H
   0.267   0.0437    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,146,227,776
Number of Sequences: 14124377
Number of extensions: 333499272
Number of successful extensions: 1244481
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 12936
Number of HSP's successfully gapped in prelim test: 8946
Number of HSP's that attempted gapping in prelim test: 1167758
Number of HSP's gapped (non-prelim): 25719
length of query: 472
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 329
effective length of database: 2,823,007,719
effective search space: 928769539551
effective search space used: 928769539551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 83 (36.5 bits)